BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780222|ref|YP_003064635.1| DNA topoisomerase IV subunit B
[Candidatus Liberibacter asiaticus str. psy62]
         (686 letters)

Database: nr 
           13,984,884 sequences; 4,792,584,752 total letters

Searching..................................................done



>gi|254780222|ref|YP_003064635.1| DNA topoisomerase IV subunit B [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254039899|gb|ACT56695.1| DNA topoisomerase IV subunit B [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 686

 Score =  699 bits (1803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 686/686 (100%), Positives = 686/686 (100%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM
Sbjct: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60

Query: 61  RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN
Sbjct: 61  RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120

Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
           HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF
Sbjct: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
           SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR
Sbjct: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
           VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG
Sbjct: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300

Query: 301 TVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISD 360
           TVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISD
Sbjct: 301 TVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISD 360

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE
Sbjct: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420

Query: 421 WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
           WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ
Sbjct: 421 WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII
Sbjct: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKI 600
           MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKI
Sbjct: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKI 600

Query: 601 LEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660
           LEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN
Sbjct: 601 LEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660

Query: 661 KLMGTKADERFKFIQERASFIDDVGT 686
           KLMGTKADERFKFIQERASFIDDVGT
Sbjct: 661 KLMGTKADERFKFIQERASFIDDVGT 686


>gi|146295090|ref|YP_001178861.1| DNA gyrase, B subunit [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145408666|gb|ABP65670.1| DNA gyrase subunit B [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 637

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/655 (41%), Positives = 405/655 (61%), Gaps = 24/655 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              ++ +  Y AS I++LEGLE VR RPGMYIG T ++ LHHL  E++DNA+DE +AG+ 
Sbjct: 2   ATTKNPNQEYTASEIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVYEIVDNAIDEAMAGFC 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             I+V +  +  +TV+D+GRGIPV+ HPK    S +E++ T LHAGGKF+ S Y++SGGL
Sbjct: 62  KNIDVIIHRDNSVTVLDDGRGIPVDIHPKLQK-SGVEVVFTVLHAGGKFNESVYKVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS  L V V R   ++ QK+ RG P+  L+   + +   GT++TF PD +
Sbjct: 121 HGVGASVVNALSRYLEVEVYRDGKVYYQKYERGKPVCDLKVIGQTQR-TGTKVTFLPDDE 179

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     FDA  LL+  +  A+L+  ++  ++ ++E       P+  E  + GG+  +++
Sbjct: 180 IFETI-EFDADVLLQRLRELAFLNKGIRITFTDEREK-----NPKTIELKYDGGIAEFVK 233

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               N+ ++  E    + EK       VE AI + ++    I S+ N I T +GGTH  G
Sbjct: 234 FLNRNKEVLHPEPIYIEGEKNQIL---VEVAIQYTDQFGENIYSFANNIATIDGGTHLVG 290

Query: 334 LRVALTRGIKKYAELTQNKRAISII-SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
            + A+T+ + +YA+     +  + +  +D+      ++SV I EP+F GQTKTKL + +A
Sbjct: 291 FKAAVTKAVNEYAKKYNFVKGDNQLLGEDIRDGMTAVVSVKIHEPQFEGQTKTKLGNSEA 350

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE--VNRKTAIRKLRLP 450
           +  VEN + +    +L +NP  + K+++  +  ++ R   RK RE  + RK+A+    LP
Sbjct: 351 RWAVENLVSEKLAAFLEENPDVSKKIIDKALLAAKAREEARKARELVIKRKSALDSSNLP 410

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS+      E+FIVEGDSAGGSAKQ R+R  QA+LPL GK+LNV  A  +KI +N
Sbjct: 411 GKLADCSEKDPEKCEIFIVEGDSAGGSAKQGRDRRYQAILPLWGKMLNVEKASPDKIYSN 470

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
            +++ L+QALGC   +    + LRY KVI+M DADVDG+HI +LLLTFFY+ M  LIE  
Sbjct: 471 DKLLPLIQALGCGIGNDLDLKKLRYHKVIVMADADVDGSHIRTLLLTFFYRYMRPLIENG 530

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           H+++  PPL++IT+G +  YA++++  QKIL+E K       ++ RFKGLGEM A +L E
Sbjct: 531 HIYIAQPPLYKITKGKQVRYAYNDKELQKILQEMKDA-----QVQRFKGLGEMNAEELWE 585

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T MD  +R LLRVE+   +      ++    LMG K + R +FI++ A ++ ++ 
Sbjct: 586 TTMDPARRILLRVELEDAVM----AEEIFTILMGEKVEPRREFIEKNAKYVRNLD 636


>gi|312126267|ref|YP_003991141.1| DNA gyrase subunit B [Caldicellulosiruptor hydrothermalis 108]
 gi|311776286|gb|ADQ05772.1| DNA gyrase, B subunit [Caldicellulosiruptor hydrothermalis 108]
          Length = 637

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/652 (40%), Positives = 397/652 (60%), Gaps = 24/652 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           Q+ S  Y AS I++LEGLE VR RPGMYIG T ++ LHHL  E++DNA+DE +AG+   I
Sbjct: 5   QNGSQQYSASEIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVYEIVDNAIDEAMAGFCKNI 64

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           EV +  +  +TV+D+GRGIPV+ HPK    S +E++ T LHAGGKF+   Y++SGGLHGV
Sbjct: 65  EVVIHKDNSVTVIDDGRGIPVDIHPKLQK-SGVEVVFTVLHAGGKFNERVYKVSGGLHGV 123

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS  L V V R   ++ Q++ RG P   L+      ++ GT++TF PD +IF 
Sbjct: 124 GASVVNALSRYLEVEVYRDGKVYYQRYERGKPTCELKVIG-TTDRTGTKVTFLPDDEIFE 182

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               FD   +L+  +  A+L+  ++  +  ++E   K          + GG+  +++   
Sbjct: 183 TI-EFDGDVILQRLRELAFLNKGIRIVFVDEREKNVKPIE-----LKYNGGIAEFVKFLN 236

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRV 336
            N+ ++  E    + EK       +E A+ +  +    I S+ N I T +GGTH  G + 
Sbjct: 237 RNKEVLHQEPIYIEGEKNDIL---IEVAVQYTEDFGENIYSFANNIATIDGGTHLIGFKT 293

Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           A+T+ + +YA+     K    ++ +D+      I+SV I EP+F GQTKTKL + +A+  
Sbjct: 294 AVTKAVNEYAKKYNFIKGDTQLLGEDIRDGMTAIVSVKIHEPQFEGQTKTKLGNSEARWA 353

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE--VNRKTAIRKLRLPGKL 453
           VEN + +    +L +NP  + K+++  I  ++ R   +K RE  + RK+A+    LPGKL
Sbjct: 354 VENLVSEKLAAFLEENPDVSKKIIDKAILAAKAREEAKKARELVIKRKSALDSSNLPGKL 413

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS+      E+FIVEGDSAGGSAKQ R+R  QA+LPL GK+LNV  A  +KI +N ++
Sbjct: 414 ADCSEKDPAKCEIFIVEGDSAGGSAKQGRDRRYQAILPLWGKMLNVEKASQDKIYSNDKL 473

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
           + L+QALG    +    + LRY K+IIM DADVDG+HI +LLLTFFY+ M  LIE  H++
Sbjct: 474 LPLIQALGVGIGNDIDLKKLRYHKIIIMADADVDGSHIRTLLLTFFYRYMRPLIENGHIY 533

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           +  PPL++IT+G +  YA++++  QKIL+E K       ++ RFKGLGEM A +L ET M
Sbjct: 534 IAQPPLYKITKGKQVRYAYNDKELQKILQEMKDA-----QVQRFKGLGEMNAQELWETTM 588

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D  +R LLRVE+   +      ++    LMG K + R +FI++ A ++ ++ 
Sbjct: 589 DPARRILLRVELEDAVM----AEEIFTILMGDKVEPRREFIEKNAKYVRNLD 636


>gi|222528063|ref|YP_002571945.1| DNA gyrase, B subunit [Caldicellulosiruptor bescii DSM 6725]
 gi|222454910|gb|ACM59172.1| DNA gyrase, B subunit [Caldicellulosiruptor bescii DSM 6725]
          Length = 650

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/651 (40%), Positives = 396/651 (60%), Gaps = 24/651 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + S  Y AS I++LEGLE VR RPGMYIG T ++ LHHL  E++DNA+DE +AG+   IE
Sbjct: 19  TNSQQYSASEIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVYEIVDNAIDEAMAGFCKNIE 78

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V +  +  +TV+D+GRGIPV+ HPK    S +E++ T LHAGGKF+   Y++SGGLHGVG
Sbjct: 79  VVIHKDNSVTVIDDGRGIPVDIHPKLQK-SGVEVVFTVLHAGGKFNERVYKVSGGLHGVG 137

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS  L V V R   ++ Q++ RG P   L+      ++ GT++TF PD +IF  
Sbjct: 138 ASVVNALSRYLEVEVYRDGKVYYQRYERGKPTCELKVIG-TTDRTGTKVTFLPDDEIFET 196

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              FD   +L+  +  A+L+  ++  +  ++E   K          + GG+  +++    
Sbjct: 197 I-EFDGDVILQRLRELAFLNKGIRIVFVDEREKNVKPVE-----LKYDGGIAEFVKFLNR 250

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVA 337
           N+ ++  E    + EK       +E A+ +  +    I S+ N I T +GGTH  G + A
Sbjct: 251 NKEVLHQEPIYIEGEKNDIL---IEVAVQYTEDFGENIYSFANNIATIDGGTHLIGFKTA 307

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           +T+ + +YA+     K    ++ +D+      I+SV I EP+F GQTKTKL + +A+  V
Sbjct: 308 VTKAVNEYAKKYNFIKGDTQLLGEDIRDGMTAIVSVKIHEPQFEGQTKTKLGNSEARWAV 367

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE--VNRKTAIRKLRLPGKLA 454
           EN + +    +L +NP  + K+++  I  ++ R   +K RE  + RK+A+    LPGKLA
Sbjct: 368 ENLVSERLAAFLEENPDVSKKIIDKAILAAKAREEAKKARELVIKRKSALDSSNLPGKLA 427

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS+      E+FIVEGDSAGGSAKQ R+R  QA+LPL GK+LNV  A  +KI +N +++
Sbjct: 428 DCSEKDPAKCEIFIVEGDSAGGSAKQGRDRRYQAILPLWGKMLNVEKASQDKIYSNDKLL 487

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            L+QALG    +    + LRY KVIIM DADVDG+HI +LLLTFFY+ M  LIE  H+++
Sbjct: 488 PLIQALGVGIGNDIDLKKLRYHKVIIMADADVDGSHIRTLLLTFFYRYMRPLIENGHIYI 547

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL++IT+G +  YA++++  QKIL+E K       ++ RFKGLGEM A +L ET MD
Sbjct: 548 AQPPLYKITKGKQVRYAYNDKELQKILQEMKDA-----QVQRFKGLGEMNAQELWETTMD 602

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             +R LLRVE+   +      ++    LMG K + R +FI++ A ++ ++ 
Sbjct: 603 PARRILLRVELEDAVM----AEEIFTILMGDKVEPRREFIEKNAKYVRNLD 649


>gi|312621133|ref|YP_004022746.1| DNA gyrase subunit B [Caldicellulosiruptor kronotskyensis 2002]
 gi|312201600|gb|ADQ44927.1| DNA gyrase, B subunit [Caldicellulosiruptor kronotskyensis 2002]
          Length = 650

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/651 (40%), Positives = 396/651 (60%), Gaps = 24/651 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + S  Y AS I++LEGLE VR RPGMYIG T ++ LHHL  E++DNA+DE +AG+   IE
Sbjct: 19  TNSQQYSASEIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVYEIVDNAIDEAMAGFCKNIE 78

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V +  +  +TV+D+GRGIPV+ HPK    S +E++ T LHAGGKF+   Y++SGGLHGVG
Sbjct: 79  VVIHKDNSVTVIDDGRGIPVDIHPKLQK-SGVEVVFTVLHAGGKFNERVYKVSGGLHGVG 137

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS  L V V R   ++ Q++ RG P   L+      ++ GT++TF PD +IF  
Sbjct: 138 ASVVNALSRYLEVEVYRDGKVYYQRYERGKPTCELKVIG-TTDRTGTKVTFLPDDEIFET 196

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              FD   +L+  +  A+L+  ++  +  ++E   K          + GG+  +++    
Sbjct: 197 I-EFDGDVILQRLRELAFLNKGIRIVFVDEREKNVKPVE-----LKYDGGIAEFVKFLNR 250

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVA 337
           N+ ++  E    + EK       +E AI +  +    I S+ N I T +GGTH  G + A
Sbjct: 251 NKEVLHQEPIYIEGEKNDIL---IEIAIQYTEDFGENIYSFANNIATIDGGTHLIGFKTA 307

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           +T+ + +YA+     K    ++ +D+      I+SV I EP+F GQTKTKL + +A+  V
Sbjct: 308 VTKAVNEYAKKYNFIKGDTQLLGEDIRDGMTAIVSVKIHEPQFEGQTKTKLGNSEARWAV 367

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE--VNRKTAIRKLRLPGKLA 454
           EN + +    +L +NP  + K+++  I  ++ R   +K RE  + RK+A+    LPGKLA
Sbjct: 368 ENLVSERLAAFLEENPDISKKIIDKAILAAKAREEAKKARELVIKRKSALDSSNLPGKLA 427

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS+      E+FIVEGDSAGGSAKQ R+R  QA+LPL GK+LNV  A  +KI +N +++
Sbjct: 428 DCSEKDPAKCEIFIVEGDSAGGSAKQGRDRRYQAILPLWGKMLNVEKASQDKIYSNDKLL 487

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            L+QALG    +    + LRY KVIIM DADVDG+HI +LLLTFFY+ M  LIE  H+++
Sbjct: 488 PLIQALGVGIGNDIDLKKLRYHKVIIMADADVDGSHIRTLLLTFFYRYMRPLIENGHIYI 547

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL++IT+G +  YA++++  QK+L+E K       ++ RFKGLGEM A +L ET MD
Sbjct: 548 AQPPLYKITKGKQVRYAYNDKELQKVLQEMKDA-----QVQRFKGLGEMNAQELWETTMD 602

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             +R LLRVE+   +      ++    LMG K + R +FI++ A ++ ++ 
Sbjct: 603 PARRILLRVELEDAVM----AEEIFTILMGDKVEPRREFIEKNAKYVRNLD 649


>gi|312792288|ref|YP_004025211.1| DNA gyrase subunit B [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179428|gb|ADQ39598.1| DNA gyrase, B subunit [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 637

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/651 (40%), Positives = 397/651 (60%), Gaps = 24/651 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + S  Y AS I++LEGLE VR RPGMYIG T ++ LHHL  E++DNA+DE +AG+   IE
Sbjct: 6   TNSQEYSASEIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVYEIVDNAIDEAMAGFCKNIE 65

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V +  +  +TV+D+GRGIPV+ HPK    S +E++ T LHAGGKF+   Y++SGGLHGVG
Sbjct: 66  VVIHKDNSVTVIDDGRGIPVDIHPKLQK-SGVEVVFTVLHAGGKFNERVYKVSGGLHGVG 124

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS  L V V R   ++ Q++ RG P   L+   +  N+ GT++TF PD +IF  
Sbjct: 125 ASVVNALSRYLEVEVYRDGKVYYQRYERGKPTCELKVIGET-NRTGTKVTFLPDDEIFET 183

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              FD   +L+  +  A+L+  ++  +  ++E   K          + GG+  +++    
Sbjct: 184 I-EFDGDVILQRLRELAFLNKGIRIVFVDEREKNAKPIE-----LKYDGGIAEFVKFLNR 237

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVA 337
           N+ ++  E    + EK       +E A+ +  +    I S+ N I T +GGTH  G + A
Sbjct: 238 NKEVLHQEPIYIEGEKNDIL---IEVAVQYTEDFGENIYSFANNIATIDGGTHLIGFKTA 294

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           +T+ + +YA+     K    ++ +D+      I+SV I EP+F GQTKTKL + +A+  V
Sbjct: 295 VTKAVNEYAKKYNFIKGDTQLLGEDIRDGMTAIVSVKIHEPQFEGQTKTKLGNSEARWAV 354

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE--VNRKTAIRKLRLPGKLA 454
           EN + +    +L +NP  + K+++  I  ++ R   +K RE  + RK+A+    LPGKLA
Sbjct: 355 ENLVSEKLAAFLEENPDVSKKIIDKAILAAKAREEAKKARELVIKRKSALDSSNLPGKLA 414

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS+      E+FIVEGDSAGGSAKQ R+R  QA+LPL GK+LNV  A  +KI +N +++
Sbjct: 415 DCSEKDPAKCEIFIVEGDSAGGSAKQGRDRRYQAILPLWGKMLNVEKASQDKIYSNDKLL 474

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            L+QALG    +    + LRY K+IIM DADVDG+HI +LLLTFFY+ M  LIE  H+++
Sbjct: 475 PLIQALGVGIGNDIDLKKLRYHKIIIMADADVDGSHIRTLLLTFFYRYMRPLIENGHIYI 534

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL++IT+G +  YA++E+  Q+IL+E K       ++ RFKGLGEM A +L ET MD
Sbjct: 535 AQPPLYKITKGKQVRYAYNEKELQRILQEMKDA-----QVQRFKGLGEMNAQELWETTMD 589

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             +R LLRVE+   +      ++    LMG K + R +FI++ A ++ ++ 
Sbjct: 590 PARRILLRVELEDAVM----AEEIFTILMGDKVEPRREFIEKNAKYVRNLD 636


>gi|312877900|ref|ZP_07737845.1| DNA gyrase, B subunit [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795326|gb|EFR11710.1| DNA gyrase, B subunit [Caldicellulosiruptor lactoaceticus 6A]
          Length = 637

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/651 (41%), Positives = 396/651 (60%), Gaps = 24/651 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + S  Y AS I++LEGLE VR RPGMYIG T ++ LHHL  E++DNA+DE +AG+   IE
Sbjct: 6   TNSQEYSASEIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVYEIVDNAIDEAMAGFCKNIE 65

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V +  +  +TV+D+GRGIPV+ HPK    S +E++ T LHAGGKF+   Y++SGGLHGVG
Sbjct: 66  VVIHKDNSVTVIDDGRGIPVDIHPKLQK-SGVEVVFTVLHAGGKFNERVYKVSGGLHGVG 124

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS  L V V R   ++ Q++ RG P   L+   +  N  GT++TF PD +IF  
Sbjct: 125 ASVVNALSRYLEVEVYRDGKVYYQRYERGKPTCELKVIGET-NSTGTKVTFLPDDEIFET 183

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              FD   +L+  +  A+L+  ++  +  ++E   K          + GG+  +++    
Sbjct: 184 I-EFDGDVILQRLRELAFLNKGIRIVFVDEREKNAKPIE-----LKYDGGIAEFVKFLNR 237

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVA 337
           N+ ++  E    + EK       +E AI +  +    I S+ N I T +GGTH  G + A
Sbjct: 238 NKEVLHQEPIYIEGEKNDIL---IEVAIQYTEDFGENIYSFANNIATIDGGTHLIGFKTA 294

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           +T+ + +YA+     K    ++ +D+      I+SV I EP+F GQTKTKL + +A+  V
Sbjct: 295 VTKAVNEYAKKYNFIKGDTQLLGEDIRDGMTAIVSVKIHEPQFEGQTKTKLGNSEARWAV 354

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE--VNRKTAIRKLRLPGKLA 454
           EN + +    +L +NP  + K+++  I  ++ R   +K RE  + RK+A+    LPGKLA
Sbjct: 355 ENLVSEKLAAFLEENPDVSKKIIDKAILAAKAREEAKKARELVIKRKSALDSSNLPGKLA 414

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS+      E+FIVEGDSAGGSAKQ R+R  QA+LPL GK+LNV  A  +KI +N +++
Sbjct: 415 DCSEKDPAKCEIFIVEGDSAGGSAKQGRDRRYQAILPLWGKMLNVEKASQDKIYSNDKLL 474

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            L+QALG    +    + LRY K+IIM DADVDG+HI +LLLTFFY+ M  LIE  H+++
Sbjct: 475 PLIQALGVGIGNDIDLKKLRYHKIIIMADADVDGSHIRTLLLTFFYRYMRPLIENGHIYI 534

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL++IT+G +  YA++E+  Q+IL+E K       ++ RFKGLGEM A +L ET MD
Sbjct: 535 AQPPLYKITKGKQVRYAYNEKELQRILQEMKDA-----QVQRFKGLGEMNAQELWETTMD 589

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             +R LLRVE+   +      ++    LMG K + R +FI++ A ++ ++ 
Sbjct: 590 PARRILLRVELEDAVM----AEEIFTILMGDKVEPRREFIEKNAKYVRNLD 636


>gi|312134087|ref|YP_004001425.1| DNA gyrase subunit B [Caldicellulosiruptor owensensis OL]
 gi|311774138|gb|ADQ03625.1| DNA gyrase, B subunit [Caldicellulosiruptor owensensis OL]
          Length = 637

 Score =  676 bits (1744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/651 (41%), Positives = 400/651 (61%), Gaps = 24/651 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +++  Y AS I++LEGLE VR RPGMYIG T ++ LHHL  E++DNA+DE +AG+   IE
Sbjct: 6   NSTQEYSASEIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVYEIVDNAIDEAMAGFCKNIE 65

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V +     +TV+D+GRGIPV+ HPK   KS +E++ T LHAGGKF+   Y++SGGLHGVG
Sbjct: 66  VVIHKGNSVTVIDDGRGIPVDIHPKL-GKSGVEVVFTVLHAGGKFNERVYKVSGGLHGVG 124

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS  L V V R   I+ Q++ RG P   L+      +K GT++TF PD +IF  
Sbjct: 125 ASVVNALSRYLEVEVYRDGKIYYQRYERGRPTCELKVIG-TTDKTGTKVTFLPDDEIFET 183

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              FD   +L+  +  A+L+  ++  +  ++E       P+  E  + GG+  +++    
Sbjct: 184 I-EFDGDVILQRLRELAFLNKGIRIVFLDEREK-----NPKPVELKYDGGIAEFVKFLNR 237

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N+ ++  E    + EK       +E A+ + ++    I S+ N I T +GGTH  G + A
Sbjct: 238 NKEVLHQEPIYIEGEKNDIL---IEVAMQYTDDFGENIYSFANNIATIDGGTHLIGFKTA 294

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           +T+ + +YA+     K    ++ +D+      I+SV I EP+F GQTKTKL + +A+  V
Sbjct: 295 VTKAVNEYAKKYNLTKGDTQLLGEDIRDGMTAIVSVKIHEPQFEGQTKTKLGNSEARWAV 354

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE--VNRKTAIRKLRLPGKLA 454
           EN + +    +L +NP  + K+++  I  ++ R   +K RE  + RK+A+    LPGKLA
Sbjct: 355 ENLVSEKLAAFLEENPDVSKKIIDKAILAAKAREEAKKARELVIKRKSALDSSNLPGKLA 414

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS+      E+FIVEGDSAGGSAKQ R+R  QA+LPL GK+LNV  A  +KI +N +++
Sbjct: 415 DCSEKDPAKCEIFIVEGDSAGGSAKQGRDRRYQAILPLWGKMLNVEKASQDKIYSNDKLL 474

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            L+QALG    +    + LRY KVIIM DADVDG+HI +LLLTFFY+ M  LIE  H+++
Sbjct: 475 PLIQALGVGIGNDIDLKKLRYHKVIIMADADVDGSHIRTLLLTFFYRYMRPLIENGHIYI 534

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL++IT+G +  YA++E+  QKIL+E K       ++ RFKGLGEM A +L ET MD
Sbjct: 535 AQPPLYKITKGKQVRYAYNEKELQKILQEMKDA-----QVQRFKGLGEMNAQELWETTMD 589

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             +R LLRVEI   +      ++    LMG + + R +FI++ A ++ ++ 
Sbjct: 590 PARRILLRVEIEDAVM----AEEIFTILMGDRVEPRREFIEKNAKYVRNLD 636


>gi|302870737|ref|YP_003839373.1| DNA gyrase, B subunit [Caldicellulosiruptor obsidiansis OB47]
 gi|302573596|gb|ADL41387.1| DNA gyrase, B subunit [Caldicellulosiruptor obsidiansis OB47]
          Length = 638

 Score =  676 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/653 (41%), Positives = 399/653 (61%), Gaps = 24/653 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           N      Y AS I++LEGLE VR RPGMYIG T ++ LHHL  E++DNA+DE +AGY   
Sbjct: 5   NPGEKQEYSASEIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVYEIVDNAIDEAMAGYCKN 64

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV +  +  +TV+D+GRGIPV+ HPK    S +E++ T LHAGGKF+   Y++SGGLHG
Sbjct: 65  IEVIIHKDNSVTVIDDGRGIPVDIHPKLQK-SGVEVVFTVLHAGGKFNERVYKVSGGLHG 123

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS  L V V R   ++ Q++ +G P+  L+      +K GT++TF PD +IF
Sbjct: 124 VGASVVNALSCYLEVEVYRDGKVYYQRYEKGKPVCELKVIG-TTDKTGTKVTFLPDDEIF 182

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                FD   +L+  +  A+L+  ++  +  ++E       P+  E  + GG+  +++  
Sbjct: 183 ETI-EFDGDVILQRLRELAFLNKGIRIVFLDEREK-----NPKPVELKYDGGIAEFVKFL 236

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
             N+ ++  E    + EK       +E A+ + ++    I S+ N I T +GGTH  G +
Sbjct: 237 NRNKEVLHQEPIYIEGEKNDIL---IEVAVQYTDDFGENIYSFANNIATIDGGTHLIGFK 293

Query: 336 VALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
            A+T+ + +YA+     K    ++ +D+      I+SV I EP+F GQTKTKL + +A+ 
Sbjct: 294 TAVTKAVNEYAKKYNFIKGDTQLLGEDIRDGMTAIVSVKIHEPQFEGQTKTKLGNSEARW 353

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE--VNRKTAIRKLRLPGK 452
            VEN + +    +L +NP  + K+++  I  ++ R   +K RE  + RK+A+    LPGK
Sbjct: 354 AVENLVSEKLATFLEENPDVSKKIIDKAILAAKAREEAKKARELVIKRKSALDSSNLPGK 413

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS+      E+FIVEGDSAGGSAKQ R+R  QA+LPL GK+LNV  A  +KI +N +
Sbjct: 414 LADCSEKDPAKCEIFIVEGDSAGGSAKQGRDRRYQAILPLWGKMLNVEKASQDKIYSNDK 473

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           ++ L+QALG    +    + LRY KVIIM DADVDG+HI +LLLTFFY+ M  LIE  H+
Sbjct: 474 LLPLIQALGVGIGNDIDLKKLRYHKVIIMADADVDGSHIRTLLLTFFYRYMRPLIENGHI 533

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL++IT+G +  YA++E+  QKIL+E K       ++ RFKGLGEM A +L ET 
Sbjct: 534 YIAQPPLYKITKGKQVRYAYNEKELQKILQEMKDA-----QVQRFKGLGEMNAQELWETT 588

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           MD  +R LLRVE+   +      ++    LMG K + R +FI++ A ++ ++ 
Sbjct: 589 MDPARRILLRVELEDAVM----AEEIFTILMGDKVEPRREFIEKNAKYVRNLD 637


>gi|108802861|ref|YP_642798.1| DNA gyrase subunit B [Rubrobacter xylanophilus DSM 9941]
 gi|108764104|gb|ABG02986.1| DNA gyrase subunit B [Rubrobacter xylanophilus DSM 9941]
          Length = 644

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/657 (40%), Positives = 386/657 (58%), Gaps = 22/657 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            A + +  +YDASSI++LEGLE V+ RPGMYIG T  + LHHL  E++DN++DE +AGY 
Sbjct: 5   TAAKHSKSDYDASSIQVLEGLEAVKRRPGMYIGSTGPRGLHHLVWEIVDNSIDEALAGYC 64

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             I V++  +  +TV D+GRG+PV    K+  KS  E+I+TTLHAGGKFD  TY++SGGL
Sbjct: 65  TEISVTVHPDNSVTVSDDGRGMPVGVMEKY-GKSAAEVIMTTLHAGGKFDGQTYKVSGGL 123

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPD 212
           HGVG SVVNALS+ L + + R   +++Q++ RG P++ LE+  K   R   GT + FRPD
Sbjct: 124 HGVGASVVNALSEWLELEIRRDGHLWTQRYERGFPVTGLERGRKLGKREGTGTTVRFRPD 183

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P+IF     F    L +  +  A+L+  ++   + ++E         +  + + GG+K +
Sbjct: 184 PQIFETV-EFSFDTLSRRFRESAFLNKGLRIRLADERE------EGREVVYRYEGGIKDF 236

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHE 331
           +    E +  +   I     E++    G VE A+ W     + + ++ N I T EGGTH 
Sbjct: 237 VAHINEAKDPVHKTILYFHREEEA---GDVEVAMQWNSGYQDSVFTFANNINTHEGGTHL 293

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           SG R ALTR I +YA       ++  ++  DD+      ++SV +REP+F GQTKTKL +
Sbjct: 294 SGFRAALTRTINEYARQKGLLKEKEENLTGDDIREGLAAVISVKLREPQFEGQTKTKLGN 353

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
            + +  VE+A       +L +NP +A  ++   I  S  RL   K R+  RK  +    L
Sbjct: 354 TEIKGLVESATNRHLAEFLEENPGQARAIVTKAINASRARLAASKARKAIRKGYLESSTL 413

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADCS      +EL+IVEGDSAGGSAKQ R+R+ QA+LPLRGKILNV  A   K+ +
Sbjct: 414 PGKLADCSSKDPARSELYIVEGDSAGGSAKQGRDRNFQAILPLRGKILNVEKANINKVLS 473

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N +I  ++ A+G      +  E+ RY K++IMTDADVDG+HI +L+LTF Y+ M +LIE 
Sbjct: 474 NAEIQAMISAIGAGVGDSFNIEEARYHKIVIMTDADVDGSHIRTLVLTFLYRNMPELIEA 533

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
            ++++  PPL++IT   + VY + +   Q+ L   +  G     +SRFKGLGEM   QL 
Sbjct: 534 GYVYIAQPPLYKITHNRRDVYVYSDAELQETLRRLRADGSA--TVSRFKGLGEMNPQQLW 591

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           ET MD   RTLL+V I+    S     +    LMG K + R  FI+  A    ++  
Sbjct: 592 ETTMDPANRTLLQVTID----SAATADELFTALMGDKVEPRKAFIEANAREAKNIDA 644


>gi|52783861|ref|YP_089690.1| DNA gyrase subunit B [Bacillus licheniformis ATCC 14580]
 gi|319648524|ref|ZP_08002740.1| DNA gyrase subunit B [Bacillus sp. BT1B_CT2]
 gi|52346363|gb|AAU38997.1| GyrB [Bacillus licheniformis ATCC 14580]
 gi|317389603|gb|EFV70414.1| DNA gyrase subunit B [Bacillus sp. BT1B_CT2]
          Length = 637

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/648 (41%), Positives = 390/648 (60%), Gaps = 20/648 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NYD + I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY   I V++
Sbjct: 5   NNYDENQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCTEINVAI 64

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +  +TV DNGRGIPV  H K   +  +E+I+T LHAGGKFD S Y++SGGLHGVG SV
Sbjct: 65  EKDNSITVKDNGRGIPVGIHEKM-GRPAVEVIMTVLHAGGKFDGSGYKVSGGLHGVGASV 123

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS EL VTV R   I  Q+F RG+P + L+         GT   F+PDP+IF +   
Sbjct: 124 VNALSTELDVTVYRDGKIHYQEFERGVPKADLKVIGDT-EVTGTTTHFKPDPEIFTETTE 182

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +D   L    +  A+L+  VK      +E  E+        + + GG+K+Y++    +R 
Sbjct: 183 YDYDTLATRVRELAFLTKGVKITIEDKREGKERKNE-----YCYEGGIKSYVEHLNRSRE 237

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
           +I  E    +  K G    TVE A+ + +     I S+ N I T EGGTHE+G +  LTR
Sbjct: 238 VIHEEPVYIEGSKDGI---TVEVALQYNDSYTSNIYSFANNIHTYEGGTHEAGFKTGLTR 294

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  YA       +   ++  +D+      I+S+   +P+F GQTKTKL + +A+   + 
Sbjct: 295 VINDYARRNGVFKESDPNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDA 354

Query: 399 ALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
              +  + +L++NP  A K++E  V+        ++ +    RK+A+    LPGKLADCS
Sbjct: 355 LFSEALEKFLLENPDSAKKIVEKGVMAARARMAAKKARELTRRKSALEVSNLPGKLADCS 414

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  ++
Sbjct: 415 SKDPTISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMI 474

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG      +  E  RY KV+IMTDADVDGAHI +LLLTFFY+ M  +IEQ ++++  P
Sbjct: 475 TALGTGIGEDFNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRQIIEQGYVYIAQP 534

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+++ QG +  YA++++  ++IL+E  ++ K    + R+KGLGEM A+QL ET MD   
Sbjct: 535 PLYKVQQGKRVEYAYNDQQLEEILKELPQNPKPG--LQRYKGLGEMNATQLWETTMDPET 592

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           RTLL+V +   +    D  ++   LMG K + R  FI+E A ++ ++ 
Sbjct: 593 RTLLQVTLKDAI----DADETFEMLMGDKVEPRRNFIEENARYVKNLD 636


>gi|52078497|ref|YP_077288.1| DNA gyrase subunit B [Bacillus licheniformis ATCC 14580]
 gi|52001708|gb|AAU21650.1| DNA gyrase (subunit B) [Bacillus licheniformis ATCC 14580]
          Length = 639

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/648 (41%), Positives = 390/648 (60%), Gaps = 20/648 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NYD + I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY   I V++
Sbjct: 7   NNYDENQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCTEINVAI 66

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +  +TV DNGRGIPV  H K   +  +E+I+T LHAGGKFD S Y++SGGLHGVG SV
Sbjct: 67  EKDNSITVKDNGRGIPVGIHEKM-GRPAVEVIMTVLHAGGKFDGSGYKVSGGLHGVGASV 125

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS EL VTV R   I  Q+F RG+P + L+         GT   F+PDP+IF +   
Sbjct: 126 VNALSTELDVTVYRDGKIHYQEFERGVPKADLKVIGDT-EVTGTTTHFKPDPEIFTETTE 184

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +D   L    +  A+L+  VK      +E  E+        + + GG+K+Y++    +R 
Sbjct: 185 YDYDTLATRVRELAFLTKGVKITIEDKREGKERKNE-----YCYEGGIKSYVEHLNRSRE 239

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
           +I  E    +  K G    TVE A+ + +     I S+ N I T EGGTHE+G +  LTR
Sbjct: 240 VIHEEPVYIEGSKDGI---TVEVALQYNDSYTSNIYSFANNIHTYEGGTHEAGFKTGLTR 296

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  YA       +   ++  +D+      I+S+   +P+F GQTKTKL + +A+   + 
Sbjct: 297 VINDYARRNGVFKESDPNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDA 356

Query: 399 ALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
              +  + +L++NP  A K++E  V+        ++ +    RK+A+    LPGKLADCS
Sbjct: 357 LFSEALEKFLLENPDSAKKIVEKGVMAARARMAAKKARELTRRKSALEVSNLPGKLADCS 416

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  ++
Sbjct: 417 SKDPTISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMI 476

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG      +  E  RY KV+IMTDADVDGAHI +LLLTFFY+ M  +IEQ ++++  P
Sbjct: 477 TALGTGIGEDFNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRQIIEQGYVYIAQP 536

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+++ QG +  YA++++  ++IL+E  ++ K    + R+KGLGEM A+QL ET MD   
Sbjct: 537 PLYKVQQGKRVEYAYNDQQLEEILKELPQNPKPG--LQRYKGLGEMNATQLWETTMDPET 594

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           RTLL+V +   +    D  ++   LMG K + R  FI+E A ++ ++ 
Sbjct: 595 RTLLQVTLKDAI----DADETFEMLMGDKVEPRRNFIEENARYVKNLD 638


>gi|296131558|ref|YP_003638805.1| DNA topoisomerase IV, B subunit [Thermincola sp. JR]
 gi|296030136|gb|ADG80904.1| DNA topoisomerase IV, B subunit [Thermincola potens JR]
          Length = 635

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/653 (40%), Positives = 385/653 (58%), Gaps = 24/653 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            Q+ + NY AS I++LEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AG+ + 
Sbjct: 2   EQNTNHNYGASQIQVLEGLEAVRRRPGMYIGSTSTRGLHHLVYEVVDNSIDEALAGFCDK 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV +  +  +TV+DNGRGIPV+ HPK   K  +E++LT LHAGGKF    Y++SGGLHG
Sbjct: 62  IEVIIHHDNSITVIDNGRGIPVDIHPKI-GKPAVEVVLTILHAGGKFGGDGYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+SVVNALS+ L V V R N I+ Q++ RG+P++ L+      N  GT+ITF+PD +IF
Sbjct: 121 VGVSVVNALSEWLEVEVKRDNHIYHQRYERGLPVTELKIIGD-SNSTGTKITFKPDHEIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            D   F+   L +  +  ++L+  +      +++  EK        F   GG+  +++  
Sbjct: 180 EDLV-FNFETLSQRLKELSFLNKGLTIILKDERDGNEKT-------FQHEGGIIDFVKHL 231

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            +N+ ++  E    + EK       VE A+ + +     I S+ N I T EGGTHE+G +
Sbjct: 232 NKNKDVLHPEPIYFEGEKDDVM---VEIALQYNDGYTENIFSFVNNIHTHEGGTHEAGFK 288

Query: 336 VALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR +  YA      +    ++  +D+      I+SV +REP+F GQTKTKL + + +
Sbjct: 289 TALTRVVNDYARKYNLLKENENNLTGEDIREGLTAIISVKVREPQFEGQTKTKLGNSEVR 348

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
             V+  + +    +L ++P  A ++ E  I  +  R   RK RE   RK A+    LPGK
Sbjct: 349 GIVDAVVVEGVGTFLEEHPPFAKRITEKAINAARAREAARKARELTRRKNALESTSLPGK 408

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS       EL++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +K+  N++
Sbjct: 409 LADCSLKDPAVCELYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKVLANEE 468

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++ A+G      +     RY K+IIMTDADVDGAHI +LLLTFFY+ M  LIE  ++
Sbjct: 469 IRAMITAMGTGISDDFDISKARYHKLIIMTDADVDGAHIRTLLLTFFYRYMRPLIEAGYV 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL+++ +     Y + +   +K+L +  + G   + + R+KGLGEM   QL ET 
Sbjct: 529 YIAQPPLYKVKKNKIDNYVYSDHELEKLLNQIGREG---VSLQRYKGLGEMNPEQLWETT 585

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           M+   RT+LRV +   +       +    LMG K + R +FIQ  A  + ++ 
Sbjct: 586 MNPETRTILRVNLEDAM----IADEIFTILMGDKVEPRREFIQTHAKEVRNLD 634


>gi|295694693|ref|YP_003587931.1| DNA gyrase, B subunit [Bacillus tusciae DSM 2912]
 gi|295410295|gb|ADG04787.1| DNA gyrase, B subunit [Bacillus tusciae DSM 2912]
          Length = 635

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/647 (41%), Positives = 392/647 (60%), Gaps = 24/647 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            YD S I++LEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AGY + I V ++
Sbjct: 8   TYDESQIQVLEGLEAVRKRPGMYIGATSSRGLHHLVWEVVDNSIDEALAGYCDHIVVRVN 67

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV+DNGRGIPV  HPK   K T+E++LT LHAGGKFD   Y++SGGLHGVG+SVV
Sbjct: 68  PDNSVTVIDNGRGIPVGTHPKL-GKPTVEVVLTVLHAGGKFDGKGYKVSGGLHGVGVSVV 126

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+ L V V R+ + + Q++SRG+P++PLE+     ++ GT++TF+PDP+IF D   F
Sbjct: 127 NALSEWLEVEVWREGSAYRQRYSRGVPVTPLERLGPT-DRTGTQVTFKPDPEIFEDVV-F 184

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L    +  A+L+  +       ++         ++EF + GG++++++    ++ +
Sbjct: 185 QYDILQGRLRELAFLNAGITIILEDARD-------GRRQEFAYQGGIRSFVEYLNRSKEV 237

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +         EK       VE A+ + +   P + S+ N I T EGGTHESG + ALTR 
Sbjct: 238 LHQPPVYIAAEKDDVM---VEVALQYNDGYVPSLYSFANNIHTHEGGTHESGFKSALTRV 294

Query: 342 IKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  YA      +    ++  +D+      I+SV I +P+F GQTKTKL + + +  VE+A
Sbjct: 295 INDYARKNNLLKDSDSNVTGEDVREGLTAIISVKIPDPQFEGQTKTKLGNSEVRGIVESA 354

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
             + F  +L +NP  A K+++  I  +  R   RK RE   RK A+    LPGKL DCS 
Sbjct: 355 FGERFVVFLEENPAVARKIVDKCITAARAREAARKARELTRRKNALEVSSLPGKLWDCSS 414

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
             A  +EL++VEGDSAGGSAK  R+R  QA+LPLRGKILNV  A  +KI +N +I  ++ 
Sbjct: 415 KDASESELYLVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARMDKILSNNEIRAIIT 474

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+G      +     RY KV+IMTDADVDG+HI +LLLTFFY+ M  LIE  ++++  PP
Sbjct: 475 AIGTGIEPDFDISRARYHKVVIMTDADVDGSHIRTLLLTFFYRYMRPLIEAGYVYIAQPP 534

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+RI +G    YA+ ++ +  I+ E K       +I R+KGLGEM A QL ET MD   R
Sbjct: 535 LYRIQKGKVVRYAYSDQERDHIVGELKGDVN---DIQRYKGLGEMDAEQLWETTMDPESR 591

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           TLL+V +   +    +     + LMG + + R +FI+  A F+ ++ 
Sbjct: 592 TLLQVSMQDAI----EADAIFSVLMGDRVEPRREFIEAHAHFVRNLD 634


>gi|147921290|ref|YP_684896.1| type II DNA topoisomerase II (gyrase), subunit B [uncultured
           methanogenic archaeon RC-I]
 gi|110620292|emb|CAJ35570.1| type II DNA topoisomerase II (gyrase), subunit B [uncultured
           methanogenic archaeon RC-I]
          Length = 635

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/654 (41%), Positives = 393/654 (60%), Gaps = 23/654 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            +N+  +  YDASSI++LEGLE VR RP MYIG TD + LHHL  EV+DN++DE +AGY 
Sbjct: 1   MSNEVPAQTYDASSIQVLEGLEAVRKRPSMYIGSTDYRGLHHLVYEVVDNSIDEALAGYC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           N I+V+++ NG +TV DNGRGIPVE H K+  K  LEI++T LHAGGKFDN TY++SGGL
Sbjct: 61  NAIDVTINPNGSVTVTDNGRGIPVEMHEKY-KKPALEIVMTILHAGGKFDNRTYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS+ L V V R   +F Q++ +G P+  ++   +  ++ GT+ TF+PD  
Sbjct: 120 HGVGVSVVNALSEYLEVEVKRNGKVFFQRYEKGKPVCEVKIIGET-DQTGTKTTFKPDKS 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     F    L    +  AYL+  ++   S         G  +  E+++ GG+  +++
Sbjct: 179 IFETV-EFQFDILANRLRELAYLNKGIRITLSD-------LGAQKSAEYHYEGGINQFIE 230

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              ++++++  +    + EK  T    VE ++ + +     I ++ N I T EGGTH SG
Sbjct: 231 YLNQDKTVLHPKPIYFEREKDTT---KVEISMQYNDGYSEVILAFANNINTHEGGTHLSG 287

Query: 334 LRVALTRGIKKYAELTQNKRAISI-ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
            R ALTR +  YA      +   +   +D+      I+SV +  P+F GQTKTKL + D 
Sbjct: 288 FRAALTRTVNDYARKNNMLKGDMVLSGEDIREGLTAIISVKLTNPQFEGQTKTKLGNSDV 347

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
           +  VE+ + D  + YL +NP +A K++E  ++  + R   RK RE   RK+A+    LPG
Sbjct: 348 KGIVESLVGDGLNDYLEENPADARKIIEKTVQAFQAREAARKARELTRRKSALEGSTLPG 407

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS+  A   EL+IVEGDSAGGSAKQ RNR  QA+LPLRGKILNV  A   KI  + 
Sbjct: 408 KLADCSEKDASKCELYIVEGDSAGGSAKQGRNRLFQAILPLRGKILNVEKARLNKILESA 467

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  L+ ALG      +  +  RY K+I+MTDADVDGAHI +LLLTFFY+ M  ++E   
Sbjct: 468 EIRALITALGTGVGEDFVLDKARYHKIILMTDADVDGAHIRTLLLTFFYRYMQQIVEAGF 527

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPL+RI +G +  Y + +    + LE     G+  + I R+KGLGEM   QL  T
Sbjct: 528 VYIAQPPLYRIKKGKEEKYVYSDRELNEALEAM---GRTNVSIQRYKGLGEMNPEQLWST 584

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   RT+ +V++   +    +   +   LMG K + R +FI + A F+ ++ 
Sbjct: 585 TMDPATRTMYQVKLEDVI----EADRTFTLLMGDKVEPRREFIVKNAKFVKNLD 634


>gi|157690804|ref|YP_001485266.1| DNA gyrase subunit B [Bacillus pumilus SAFR-032]
 gi|157679562|gb|ABV60706.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Bacillus pumilus
           SAFR-032]
          Length = 642

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/654 (40%), Positives = 389/654 (59%), Gaps = 20/654 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
           A +   ++YD + I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY  
Sbjct: 4   AMEQQHNSYDENQIQVLEGLEAVRKRPGMYIGSTSAKGLHHLVWEIVDNSIDEALAGYCT 63

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V ++ +  +TV DNGRGIPV  H K   +  +E+I+T LHAGGKFD S Y++SGGLH
Sbjct: 64  DITVQIEKDNSITVKDNGRGIPVGIHEKM-GRPAVEVIMTVLHAGGKFDGSGYKVSGGLH 122

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS  L VTV R   I  Q+F RG+P+  LE   +  +  GT   F PDP+I
Sbjct: 123 GVGASVVNALSTTLDVTVYRDGKIHYQQFKRGVPVGDLEIIGET-DVTGTTTHFVPDPEI 181

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   FD   L    +  A+L+  V       +E  E+        + + GG+K+Y++ 
Sbjct: 182 FTETIEFDYDTLANRVRELAFLTKGVNIIIEDLREGKERRNE-----YCYEGGIKSYVEH 236

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              ++ ++  E    + E+ G    TVE A+ + +     I S+ N I T EGGTHE+G 
Sbjct: 237 LNRSKEVVHEEPVYIEGERDGI---TVEVALQYNDSYTSNIYSFANNINTYEGGTHEAGF 293

Query: 335 RVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           +  LTR I  YA      +    ++  +D+      I+S+   +P+F GQTKTKL + +A
Sbjct: 294 KTGLTRVINDYARKNGVFKDGDSNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEA 353

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           +   ++   +  + +L++NP  A K++E  V+        ++ +    RK+A+    LPG
Sbjct: 354 RTITDSLFSEALEKFLLENPDAAKKIVEKGVMAARARMAAKKARELTRRKSALEVSSLPG 413

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N 
Sbjct: 414 KLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNN 473

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++  ++ ALG      +  E  RY KV+IMTDADVDGAHI +LLLTFFY+ M ++IE  +
Sbjct: 474 EVRSMITALGTGIGEDFNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMREIIENGY 533

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPL+++ QG +  Y ++++   ++L+   +  K    + R+KGLGEM A+QL ET
Sbjct: 534 VYIAQPPLYKVQQGKRVEYVYNDKQLDELLKSLSQTPKPG--LQRYKGLGEMNAAQLWET 591

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD + RTLL+V +   +    D  ++   LMG K + R  FI+E A ++ ++ 
Sbjct: 592 TMDPDARTLLQVTLEDAI----DADETFEMLMGDKVEPRRNFIEENAQYVKNLD 641


>gi|254478916|ref|ZP_05092278.1| DNA gyrase, B subunit [Carboxydibrachium pacificum DSM 12653]
 gi|214035138|gb|EEB75850.1| DNA gyrase, B subunit [Carboxydibrachium pacificum DSM 12653]
          Length = 654

 Score =  664 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/669 (40%), Positives = 388/669 (57%), Gaps = 24/669 (3%)

Query: 21  EKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSE 80
           +K  K   +         +  + Y AS I+ILEGLE VR RPGMYIG T  + LHHL  E
Sbjct: 5   KKNDKIKLLDKFLEGRTMAKDETYTASQIQILEGLEAVRKRPGMYIGSTGSRGLHHLVYE 64

Query: 81  VIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140
           V+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+ LT LHAG
Sbjct: 65  VVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVALTMLHAG 123

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKF+N  Y++SGGLHGVG+SVVNALS+ L V V ++  +F Q + RG+P +PLE   +  
Sbjct: 124 GKFNNDAYKVSGGLHGVGVSVVNALSERLEVIVKQRGKVFRQVYERGVPKTPLEVIGETE 183

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
              GT ITF+PD +IF +   FD   L +  +  A+L+  +      +++  E       
Sbjct: 184 E-TGTIITFKPDKEIFEEIV-FDYDILAQRLRELAFLNKGINIKLIDERDGKE------- 234

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
           E F + GGL  +++    N+ ++  E    + +        VE  + + +     I S+ 
Sbjct: 235 EVFNYEGGLIAFVKYLNRNKEVLHEEPIYMEAK---NTDYEVEVCMQYNDSYNENIYSFA 291

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREP 377
           N I T EGGTH  G + ALT+ I  YA+     +    ++  +D+      I+SV ++ P
Sbjct: 292 NNIDTKEGGTHLIGFKSALTKVINDYAKKYGMIKDGEKNLQGEDVREGLTAIVSVKLKNP 351

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F GQTKT+L + + +  VE  + +    YL +NP  A  ++E  ++ +  R   RK RE
Sbjct: 352 QFEGQTKTRLGNPEMRSIVEGVVTEKLSAYLEENPSVARIIVEKALQAARAREAARKARE 411

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              RK+A+    LPGKLADCS+      ELFIVEGDSAGGSAK  RN   QA+LPLRGKI
Sbjct: 412 LTRRKSALENTALPGKLADCSEKDPSKCELFIVEGDSAGGSAKAGRNSRFQAILPLRGKI 471

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556
           LNV  A  +KI +N++I  ++ ALG      +    LRY KVIIMTDADVDG+HI +LLL
Sbjct: 472 LNVEKARLDKILSNEEIRSIITALGTGIGEDFDISKLRYHKVIIMTDADVDGSHIRTLLL 531

Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616
           TFF++ M  LIE  H+++  PPL++IT+G K  YA+ +    KIL E    G+  I + R
Sbjct: 532 TFFFRFMKPLIENGHIYIAQPPLYKITKGKKVYYAYSDRELDKILSEI---GRENIVVQR 588

Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           +KGLGEM A QL ET MD  KRT+L+V +   +       +    LMG K + R +FI++
Sbjct: 589 YKGLGEMNADQLWETTMDPEKRTMLKVTLEDAI----AADEIFTILMGDKVEPRREFIEK 644

Query: 677 RASFIDDVG 685
            A  + ++ 
Sbjct: 645 YAKTVRNLD 653


>gi|297528381|ref|YP_003669656.1| DNA gyrase subunit beta [Geobacillus sp. C56-T3]
 gi|319765163|ref|YP_004130664.1| DNA gyrase B subunit [Geobacillus sp. Y412MC52]
 gi|297251633|gb|ADI25079.1| DNA gyrase, B subunit [Geobacillus sp. C56-T3]
 gi|317110029|gb|ADU92521.1| DNA gyrase, B subunit [Geobacillus sp. Y412MC52]
          Length = 638

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/653 (40%), Positives = 388/653 (59%), Gaps = 21/653 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            Q     YDAS I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY   
Sbjct: 2   EQRVEQTYDASQIQVLEGLEAVRKRPGMYIGSTGPKGLHHLVWEIVDNSIDEALAGYCTN 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+V++  +  +TV DNGRGIPV+ H +   +  +E+I+T LHAGGKF    Y++SGGLHG
Sbjct: 62  IDVTIGKDNSITVADNGRGIPVDIH-EATGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS+ L V V R   I  Q++ RG P + L+   +  ++ GT   F+PDP+IF
Sbjct: 121 VGASVVNALSEWLEVYVYRDGKIHYQRYERGEPCTDLQVIGET-DRTGTTTRFKPDPEIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   FD   L    +  A+L+  +K   + ++  + K        + + GG+++Y++  
Sbjct: 180 TETTEFDYETLATRLRELAFLNRGLKITLTDERVDSRKNE------YVYEGGIRSYVRHL 233

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
              R ++  E      E+ G     VE A+ + +     I S+ N I T EGGTHESG +
Sbjct: 234 NRTREVLHEEPIYIAGERDGI---AVEIALQYNDGYTSNIYSFVNNIHTHEGGTHESGFK 290

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
           +ALTR I  YA   Q   +   ++  +D+      I+S+    P+F GQTKTKL + DA+
Sbjct: 291 MALTRIINDYARKQQIFKENDANLTGEDVREGLTAIVSIKHPSPQFEGQTKTKLGNSDAR 350

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
              +    + F+ +L++NP  A K++E  ++        ++ +    RK+A+    LPGK
Sbjct: 351 TVTDAVFSEQFETFLLENPTIARKIVEKGMMAARARLAAKKARELTRRKSALEISNLPGK 410

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS      +EL++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N +
Sbjct: 411 LADCSSRDPSISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNE 470

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           +  ++ ALG     ++     RY KVIIMTDADVDGAHI +LLLTFFY+ M +LIE  ++
Sbjct: 471 VRAIITALGTGIGEEFDISKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRELIEHGYI 530

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL++I QG +  YA+++   +KIL E     + K  I R+KGLGEM   QL ET 
Sbjct: 531 YIAQPPLYKIEQGKQVRYAYNDRQLEKILAELP--DQPKPTIQRYKGLGEMNPEQLWETT 588

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           M+   RTLL+V +   +    D  ++   LMG K + R +FI+E A ++ ++ 
Sbjct: 589 MNPETRTLLQVSLQDAI----DADETFEILMGDKVEPRRQFIEENARYVKNLD 637


>gi|56418540|ref|YP_145858.1| DNA gyrase subunit B [Geobacillus kaustophilus HTA426]
 gi|56378382|dbj|BAD74290.1| DNA gyrase subunit B [Geobacillus kaustophilus HTA426]
          Length = 638

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/653 (40%), Positives = 388/653 (59%), Gaps = 21/653 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            Q     YDAS I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY   
Sbjct: 2   EQRVEQTYDASQIQVLEGLEAVRKRPGMYIGSTGPKGLHHLVWEIVDNSIDEALAGYCTN 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+V++  +  +TV DNGRGIPV+ H +   +  +E+I+T LHAGGKF    Y++SGGLHG
Sbjct: 62  IDVTIGKDNSITVADNGRGIPVDIH-EATGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS+ L V V R   I  Q++ RG P + L+   +  ++ GT   F+PDP+IF
Sbjct: 121 VGASVVNALSEWLEVYVYRDGKIHYQRYERGEPCTDLQVIGET-DRTGTTTRFKPDPEIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   FD   L    +  A+L+  +K   + ++  + K        + + GG+++Y++  
Sbjct: 180 TETTEFDYETLATRLRELAFLNRGLKITLTDERVDSRKNE------YVYEGGIRSYVRHL 233

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
              R ++  E      E+ G     VE A+ + +     I S+ N I T EGGTHESG +
Sbjct: 234 NRTREVLHEEPIYIAGERDGI---AVEIALQYNDGYTSNIYSFVNNIHTHEGGTHESGFK 290

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
           +ALTR I  YA   Q   +   ++  +D+      I+S+    P+F GQTKTKL + DA+
Sbjct: 291 MALTRIINDYARKQQIFKENDTNLTGEDVREGLTAIVSIKHPSPQFEGQTKTKLGNSDAR 350

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
              +    + F+ +L++NP  A K++E  ++        ++ +    RK+A+    LPGK
Sbjct: 351 TVTDAVFSEQFETFLLENPTIARKIVEKGMMAARARLAAKKARELTRRKSALEISNLPGK 410

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS      +EL++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N +
Sbjct: 411 LADCSSRDPSISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNE 470

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           +  ++ ALG     ++     RY KVIIMTDADVDGAHI +LLLTFFY+ M +LIE  ++
Sbjct: 471 VRAIITALGTGIGEEFDISKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRELIEHGYI 530

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL++I QG +  YA+++   +KIL E     + K  I R+KGLGEM   QL ET 
Sbjct: 531 YIAQPPLYKIEQGKQVRYAYNDRQLEKILAELP--DQPKPTIQRYKGLGEMNPEQLWETT 588

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           M+   RTLL+V +   +    D  ++   LMG K + R +FI+E A ++ ++ 
Sbjct: 589 MNPETRTLLQVSLQDAI----DADETFEILMGDKVEPRRQFIEENARYVKNLD 637


>gi|261417505|ref|YP_003251187.1| DNA gyrase subunit B [Geobacillus sp. Y412MC61]
 gi|261373962|gb|ACX76705.1| DNA gyrase, B subunit [Geobacillus sp. Y412MC61]
          Length = 640

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/653 (40%), Positives = 388/653 (59%), Gaps = 21/653 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            Q     YDAS I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY   
Sbjct: 4   EQRVEQTYDASQIQVLEGLEAVRKRPGMYIGSTGPKGLHHLVWEIVDNSIDEALAGYCTN 63

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+V++  +  +TV DNGRGIPV+ H +   +  +E+I+T LHAGGKF    Y++SGGLHG
Sbjct: 64  IDVTIGKDNSITVADNGRGIPVDIH-EATGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS+ L V V R   I  Q++ RG P + L+   +  ++ GT   F+PDP+IF
Sbjct: 123 VGASVVNALSEWLEVYVYRDGKIHYQRYERGEPCTDLQVIGET-DRTGTTTRFKPDPEIF 181

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   FD   L    +  A+L+  +K   + ++  + K        + + GG+++Y++  
Sbjct: 182 TETTEFDYETLATRLRELAFLNRGLKITLTDERVDSRKNE------YVYEGGIRSYVRHL 235

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
              R ++  E      E+ G     VE A+ + +     I S+ N I T EGGTHESG +
Sbjct: 236 NRTREVLHEEPIYIAGERDGI---AVEIALQYNDGYTSNIYSFVNNIHTHEGGTHESGFK 292

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
           +ALTR I  YA   Q   +   ++  +D+      I+S+    P+F GQTKTKL + DA+
Sbjct: 293 MALTRIINDYARKQQIFKENDANLTGEDVREGLTAIVSIKHPSPQFEGQTKTKLGNSDAR 352

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
              +    + F+ +L++NP  A K++E  ++        ++ +    RK+A+    LPGK
Sbjct: 353 TVTDAVFSEQFETFLLENPTIARKIVEKGMMAARARLAAKKARELTRRKSALEISNLPGK 412

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS      +EL++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N +
Sbjct: 413 LADCSSRDPSISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNE 472

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           +  ++ ALG     ++     RY KVIIMTDADVDGAHI +LLLTFFY+ M +LIE  ++
Sbjct: 473 VRAIITALGTGIGEEFDISKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRELIEHGYI 532

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL++I QG +  YA+++   +KIL E     + K  I R+KGLGEM   QL ET 
Sbjct: 533 YIAQPPLYKIEQGKQVRYAYNDRQLEKILAELP--DQPKPTIQRYKGLGEMNPEQLWETT 590

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           M+   RTLL+V +   +    D  ++   LMG K + R +FI+E A ++ ++ 
Sbjct: 591 MNPETRTLLQVSLQDAI----DADETFEILMGDKVEPRRQFIEENARYVKNLD 639


>gi|194016365|ref|ZP_03054979.1| DNA gyrase, B subunit [Bacillus pumilus ATCC 7061]
 gi|194011838|gb|EDW21406.1| DNA gyrase, B subunit [Bacillus pumilus ATCC 7061]
          Length = 640

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/655 (40%), Positives = 388/655 (59%), Gaps = 20/655 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            A +   ++YD + I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY 
Sbjct: 1   MAMEQQHNSYDENQIQVLEGLEAVRKRPGMYIGSTSAKGLHHLVWEIVDNSIDEALAGYC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             I V ++ +  +TV DNGRGIPV  H K   +  +E+I+T LHAGGKFD S Y++SGGL
Sbjct: 61  TDITVQIEKDNSITVKDNGRGIPVGIHEKM-GRPAVEVIMTVLHAGGKFDGSGYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS  L VTV R   I  Q+F RG+P+  LE   +  +  GT   F PD +
Sbjct: 120 HGVGASVVNALSTTLDVTVYRDGKIHYQQFKRGVPVGDLEIIGET-DVTGTTTHFVPDTE 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   FD   L    +  A+L+  V       +E  E+        + + GG+K+Y++
Sbjct: 179 IFTETIEFDYDTLANRVRELAFLTKGVNIVIEDLREGKERRNE-----YCYEGGIKSYVE 233

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               ++ ++  E    + EK G    TVE A+ + +     I S+ N I T EGGTHE+G
Sbjct: 234 HLNRSKEVVHEEPVYIEGEKDGI---TVEVALQYNDSYTSNIYSFANNINTYEGGTHEAG 290

Query: 334 LRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            +  LTR I  YA      +    ++  +D+      I+S+   +P+F GQTKTKL + +
Sbjct: 291 FKTGLTRVINDYARKNGVFKDGDSNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSE 350

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLP 450
           A+   ++   +  + +L++NP  A K++E  V+        ++ +    RK+A+    LP
Sbjct: 351 ARTITDSLFSEALEKFLLENPDAAKKIVEKGVMAARARMAAKKARELTRRKSALEVSSLP 410

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N
Sbjct: 411 GKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSN 470

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
            ++  ++ ALG      +  E  RY KV+IMTDADVDGAHI +LLLTFFY+ M ++IE  
Sbjct: 471 NEVRSMITALGTGIGEDFNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMREIIENG 530

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPLF++ QG +  Y ++++   ++L+   +  K    + R+KGLGEM A+QL E
Sbjct: 531 YVYIAQPPLFKVQQGKRVEYVYNDKQLDELLKTLPQTPKPG--LQRYKGLGEMNATQLWE 588

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T MD + RTLL+V +   +    D  ++   LMG K + R  FI+E A ++ ++ 
Sbjct: 589 TTMDPDARTLLQVTLEDAI----DADETFEMLMGDKVEPRRNFIEENAQYVKNLD 639


>gi|20806552|ref|NP_621723.1| DNA gyrase subunit B [Thermoanaerobacter tengcongensis MB4]
 gi|20514990|gb|AAM23327.1| DNA gyrase (topoisomerase II) B subunit [Thermoanaerobacter
           tengcongensis MB4]
          Length = 654

 Score =  663 bits (1709), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/669 (40%), Positives = 388/669 (57%), Gaps = 24/669 (3%)

Query: 21  EKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSE 80
           +K  K   +         +  + Y AS I+ILEGLE VR RPGMYIG T  + LHHL  E
Sbjct: 5   KKNDKIKLLDKFLEGRTMAKDETYTASQIQILEGLEAVRKRPGMYIGSTGSRGLHHLVYE 64

Query: 81  VIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140
           V+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+ LT LHAG
Sbjct: 65  VVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVALTMLHAG 123

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKF+N  Y++SGGLHGVG+SVVNALS+ L V V ++  +F Q + RG+P +PLE   +  
Sbjct: 124 GKFNNDAYKVSGGLHGVGVSVVNALSERLEVIVKQRGKVFRQVYERGVPKTPLEVIGETE 183

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
              GT ITF+PD +IF +   FD   L +  +  A+L+  +      +++  E       
Sbjct: 184 E-TGTIITFKPDKEIFEEIV-FDYDILAQRLRELAFLNKGINIKLIDERDGKE------- 234

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
           E F + GGL  +++    N+ ++  E    + +        VE  + + +     I S+ 
Sbjct: 235 EVFNYEGGLIAFVKYLNRNKEVLHEEPIYMEAK---NTDYEVEVCMQYNDSYNENIYSFA 291

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREP 377
           N I T EGGTH  G + ALT+ I  YA+     +    ++  +D+      I+SV ++ P
Sbjct: 292 NNIDTKEGGTHLIGFKSALTKVINDYAKKYGMIKDGEKNLQGEDVREGLTAIVSVKLKNP 351

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F GQTKT+L + + +  VE  + +    YL +NP  A  ++E  ++ +  R   RK RE
Sbjct: 352 QFEGQTKTRLGNPEMRSIVEGVVTEKLSAYLEENPSVARIIVEKALQAARAREAARKARE 411

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              RK+A+    LPGKLADCS+      ELFIVEGDSAGGSAK  RN   QA+LPLRGKI
Sbjct: 412 LTRRKSALENTALPGKLADCSEKDPSKCELFIVEGDSAGGSAKAGRNSRFQAILPLRGKI 471

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556
           LNV  A  +KI +N++I  ++ ALG      +    LRY KVIIMTDADVDG+HI +LLL
Sbjct: 472 LNVEKARLDKIFSNEEIRSIITALGTGIGEDFDISKLRYHKVIIMTDADVDGSHIRTLLL 531

Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616
           TFF++ M  LIE  H+++  PPL++IT+G K  YA+ +    KIL E    G+  I + R
Sbjct: 532 TFFFRFMKPLIENGHIYIAQPPLYKITKGKKVYYAYSDRELDKILSEI---GRENIVVQR 588

Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           +KGLGEM A QL ET MD  KRT+L+V +   +       +    LMG K + R +FI++
Sbjct: 589 YKGLGEMNADQLWETTMDPEKRTMLKVTLEDAI----AADEIFTILMGDKVEPRREFIEK 644

Query: 677 RASFIDDVG 685
            A  + ++ 
Sbjct: 645 YAKTVRNLD 653


>gi|16077074|ref|NP_387887.1| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis str. 168]
 gi|221307815|ref|ZP_03589662.1| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis str. 168]
 gi|221312137|ref|ZP_03593942.1| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|221317070|ref|ZP_03598364.1| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221321333|ref|ZP_03602627.1| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis str. SMY]
 gi|321313673|ref|YP_004205960.1| DNA gyrase subunit B [Bacillus subtilis BSn5]
 gi|121887|sp|P05652|GYRB_BACSU RecName: Full=DNA gyrase subunit B
 gi|40018|emb|CAA26221.1| unnamed protein product [Bacillus subtilis]
 gi|467396|dbj|BAA05242.1| B subunit of DNA gyrase [Bacillus subtilis]
 gi|2632273|emb|CAB11782.1| DNA gyrase (subunit B) [Bacillus subtilis subsp. subtilis str. 168]
 gi|291482375|dbj|BAI83450.1| DNA gyrase subunit B [Bacillus subtilis subsp. natto BEST195]
 gi|320019947|gb|ADV94933.1| DNA gyrase subunit B [Bacillus subtilis BSn5]
          Length = 638

 Score =  661 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/652 (40%), Positives = 391/652 (59%), Gaps = 20/652 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +   ++YD + I++LEGLE VR RPGMYIG T+ K LHHL  E++DN++DE +AGY   I
Sbjct: 2   EQQQNSYDENQIQVLEGLEAVRKRPGMYIGSTNSKGLHHLVWEIVDNSIDEALAGYCTDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            + ++ +  +TVVDNGRGIPV  H K   +  +E+I+T LHAGGKFD S Y++SGGLHGV
Sbjct: 62  NIQIEKDNSITVVDNGRGIPVGIHEKM-GRPAVEVIMTVLHAGGKFDGSGYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS EL VTV R   I  Q + RG+P++ LE   +  +  GT   F PDP+IF 
Sbjct: 121 GASVVNALSTELDVTVHRDGKIHRQTYKRGVPVTDLEIIGET-DHTGTTTHFVPDPEIFS 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   +D   L    +  A+L+  V       +E  E+        +++ GG+K+Y++   
Sbjct: 180 ETTEYDYDLLANRVRELAFLTKGVNITIEDKREGQERKNE-----YHYEGGIKSYVEYLN 234

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            ++ ++  E    + EK G    TVE A+ + +     I S+ N I T EGGTHE+G + 
Sbjct: 235 RSKEVVHEEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKT 291

Query: 337 ALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
            LTR I  YA      +    ++  DD+      I+S+   +P+F GQTKTKL + +A+ 
Sbjct: 292 GLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEART 351

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKL 453
             +       + ++++NP  A K+++  +  +  R+  +K      RK+A+    LPGKL
Sbjct: 352 ITDTLFSTAMETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALEISNLPGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++
Sbjct: 412 ADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEV 471

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ ALG      +  E  RY KV+IMTDADVDGAHI +LLLTFFY+ M  +IE  +++
Sbjct: 472 RSMITALGTGIGEDFNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRQIIENGYVY 531

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           +  PPL+++ QG +  YA++++  +++L+   +  K    + R+KGLGEM A+QL ET M
Sbjct: 532 IAQPPLYKVQQGKRVEYAYNDKELEELLKTLPQTPKPG--LQRYKGLGEMNATQLWETTM 589

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D + RTLL+V +   +    D  ++   LMG K + R  FI+  A ++ ++ 
Sbjct: 590 DPSSRTLLQVTLEDAM----DADETFEMLMGDKVEPRRNFIEANARYVKNLD 637


>gi|167629176|ref|YP_001679675.1| DNA gyrase, b subunit [Heliobacterium modesticaldum Ice1]
 gi|167591916|gb|ABZ83664.1| DNA gyrase, b subunit [Heliobacterium modesticaldum Ice1]
          Length = 641

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/651 (39%), Positives = 381/651 (58%), Gaps = 24/651 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           S + +YDAS I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AGY N I+
Sbjct: 10  SGASSYDASQIQVLEGLEAVRRRPGMYIGSTSARGLHHLVYEIVDNSIDEALAGYCNRID 69

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V +  +  + V+DNGRGIPV+ HPK   K  +E+ LT LHAGGKF    Y++SGGLHGVG
Sbjct: 70  VIIHDDNSIEVIDNGRGIPVDIHPKM-GKPAVEVALTVLHAGGKFGGEGYKVSGGLHGVG 128

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS++L VTV R   I  Q + RG+  S L    + +   GT I F+PDP+IF +
Sbjct: 129 LSVVNALSEKLRVTVRRNGKIHEQHYERGVATSELRVVGQSKE-TGTTIYFKPDPQIFDE 187

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              +    L    +  ++L+  V+   +  +   E         F   GG+  +++    
Sbjct: 188 L-EYSYDTLSHRLRELSFLNRGVRITLTDKRSGQE-------SVFAHSGGIVDFVKFLNR 239

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N+ +I +E+   +TEK G H   VE A+ + +     + SY N I T EGGTHE+G + A
Sbjct: 240 NKDVIHNEVIYFQTEKDGVH---VEVALQYNDGYVENLFSYANNINTQEGGTHEAGFKTA 296

Query: 338 LTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR + +YA      +    ++  +D+      ++SV +REP+F GQTKTKL + + +  
Sbjct: 297 LTRVVNEYARRLNQLKDNENNLSGEDIREGITAVISVKVREPQFEGQTKTKLGNSEVRGI 356

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454
           +++ + +    YL ++P  A +++E  I     R   RK RE   RKTA+    LPGKLA
Sbjct: 357 IDSCVTEGVGTYLEEHPSIAKRIIEKAIGAMRAREAARKARELTRRKTALESTSLPGKLA 416

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS       EL++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  +  +K+ +N++I 
Sbjct: 417 DCSFKDPSLCELYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRLDKVLSNEEIR 476

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++ A+G      +     RY ++ +MTDADVDG+HI +LLLTFFY+ M  LIE  ++++
Sbjct: 477 AIITAMGTGIGEDFDLSKARYHRICLMTDADVDGSHIRTLLLTFFYRHMKPLIENGYVYI 536

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL+++ +     Y + +    + LE   K G+  + I R+KGLGEM   QL ET MD
Sbjct: 537 AQPPLYQVKKNRDVRYFYHDNELNRYLE---KTGRDGVTIQRYKGLGEMNPEQLWETTMD 593

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              RT+L+V +        + +     LMG + + R  FIQ  A  + ++ 
Sbjct: 594 PKNRTILQVSLED----AAEAELIFTTLMGDRVEPRRDFIQSHAKDVRNLD 640


>gi|296330042|ref|ZP_06872526.1| DNA gyrase subunit B [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305672704|ref|YP_003864375.1| DNA gyrase subunit B [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296153081|gb|EFG93946.1| DNA gyrase subunit B [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305410947|gb|ADM36065.1| DNA gyrase subunit B [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 638

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/652 (40%), Positives = 390/652 (59%), Gaps = 20/652 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +   ++YD + I++LEGLE VR RPGMYIG T+ K LHHL  E++DN++DE +AGY   I
Sbjct: 2   EQQQNSYDENQIQVLEGLEAVRKRPGMYIGSTNSKGLHHLVWEIVDNSIDEALAGYCTDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            + ++ +  +TV+DNGRGIPV  H K   +  +E+I+T LHAGGKFD S Y++SGGLHGV
Sbjct: 62  NIQIEKDNSITVIDNGRGIPVGIHEKM-GRPAVEVIMTVLHAGGKFDGSGYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS EL VTV R   I  Q + RG+P+S LE   +  +  GT   F PDP+IF 
Sbjct: 121 GASVVNALSTELVVTVHRDGKIHRQTYKRGVPVSDLEIIGET-DHTGTTTHFVPDPEIFT 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   +D   L    +  A+L+  V       +E  E+        +++ GG+K+Y++   
Sbjct: 180 ETTVYDYDLLANRVRELAFLTKGVNITIEDKREGQERKNE-----YHYEGGIKSYVEYLN 234

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            ++ ++  E    + EK G    TVE A+ + +     I S+ N I T EGGTHE+G + 
Sbjct: 235 RSKEVVHEEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKT 291

Query: 337 ALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
            LTR I  YA      +    ++  DD+      I+S+   +P+F GQTKTKL + +A+ 
Sbjct: 292 GLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEART 351

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKL 453
             +       + ++++NP  A K+++  +  +  R+  +K      RK+A+    LPGKL
Sbjct: 352 ITDTLFSAALETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALEISNLPGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++
Sbjct: 412 ADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEV 471

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ ALG      +  E  RY KV+IMTDADVDGAHI +LLLTFFY+ M  +IE  +++
Sbjct: 472 RSMITALGTGIGEDFNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRQIIENGYVY 531

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           +  PPL+++ QG +  YA++++  + +L+   +  K    + R+KGLGEM A+QL ET M
Sbjct: 532 IAQPPLYKVQQGKRVEYAYNDKELEDLLKTLPQTPKPG--LQRYKGLGEMNATQLWETTM 589

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D + RTLL+V +   +    D  ++   LMG K + R  FI+  A ++ ++ 
Sbjct: 590 DPSSRTLLQVTLEDAM----DADETFEMLMGDKVEPRRNFIEANARYVKNLD 637


>gi|288574018|ref|ZP_06392375.1| DNA gyrase, B subunit [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569759|gb|EFC91316.1| DNA gyrase, B subunit [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 637

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/654 (40%), Positives = 387/654 (59%), Gaps = 21/654 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
               SA   Y A SI+ILEGLE VR RPGMYIG T  + LHH   EV+DNA+DE +AGY 
Sbjct: 1   MTATSAQSQYTAQSIQILEGLEAVRKRPGMYIGDTATRGLHHCVYEVVDNAVDEALAGYC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I+V++  +G ++V DNGRGIPV+ HP    +   E++LT LHAGGKF+N TY++SGGL
Sbjct: 61  SEIKVTIHTDGSVSVSDNGRGIPVDPHPSN-GRPACEVVLTVLHAGGKFNNDTYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS  L + + R    + Q+F +GIP++ LE      +K GT + F PD +
Sbjct: 120 HGVGVSVVNALSSWLELDICRNGKTWGQRFEKGIPVTDLE-GGYETDKSGTTVHFMPDDE 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   F A  L    +  A+L   +K     D+E  E         F++ GGL ++++
Sbjct: 179 IFEEVC-FSAEILGNRLREMAFLIPGLKITLIDDREEKE-------WTFHYEGGLASFVE 230

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333
               ++S +  +      E+       VE  + + +   E    + N I T EGGTH  G
Sbjct: 231 YLNRDKSSLFPKPIVVSGERDSIF---VEVGLQYNDGYHERLFSFANLIHTMEGGTHVIG 287

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           LR A+TR I + A   +    +  ++  +DL      ++SV + +P+F GQTKTKL + +
Sbjct: 288 LRSAITRAINESARRNKVLKDKDANLSGEDLKEGLTCVISVKLGDPQFEGQTKTKLGNSE 347

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
            +  V++ + +     L ++P     +++  ++  + R   +K RE+ RKTA+  L LPG
Sbjct: 348 VKGIVDSIVYEGLLVALDEDPSVLKPVVDKAVKARQAREAAKKARELVRKTAMTGLNLPG 407

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS  I    E++IVEGDSAGGSAKQ R+R+ QA+LPLRGKILNV  A  ++I +++
Sbjct: 408 KLADCSGRIPENCEVYIVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKARLDRILSSK 467

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++QALGC     +    LRY K+IIMTDADVDGAHI++LLLTFFY+ M +L+E  +
Sbjct: 468 EIRTIIQALGCGIGEDFDTTKLRYHKIIIMTDADVDGAHISTLLLTFFYRYMKELVEGGY 527

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           ++L  PPL+R+  G  S Y   ++  +  +   K  GK KI + R+KGLGEM   QL ET
Sbjct: 528 IYLAQPPLYRVQIGRHSEYIFSDKDLRTFMNSHKDTGK-KIGVQRYKGLGEMNPEQLWET 586

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   R + R+E++  L       +  + LMG K + R +FIQ  +  + ++ 
Sbjct: 587 TMDPENRVMKRIEVDDAL----AADEYFSILMGDKVEPRREFIQAHSHEVQNLD 636


>gi|89892751|ref|YP_516238.1| DNA gyrase subunit B [Desulfitobacterium hafniense Y51]
 gi|219666076|ref|YP_002456511.1| DNA gyrase subunit beta [Desulfitobacterium hafniense DCB-2]
 gi|89332199|dbj|BAE81794.1| DNA gyrase subunit B [Desulfitobacterium hafniense Y51]
 gi|219536336|gb|ACL18075.1| DNA gyrase, B subunit [Desulfitobacterium hafniense DCB-2]
          Length = 644

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/651 (41%), Positives = 384/651 (58%), Gaps = 24/651 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
            +++Y+A  I +LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AGY + IEV
Sbjct: 12  PTNDYNAGQIEVLEGLEAVRKRPGMYIGSTSLRGLHHLVYEIVDNSIDEALAGYCDTIEV 71

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++VVDNGRGIPV+ HPK   K  +E+ LT LHAGGKF  S Y++SGGLHGVG+
Sbjct: 72  TIHKDNSISVVDNGRGIPVDIHPKL-GKPAVEVALTVLHAGGKFSGSAYKVSGGLHGVGM 130

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS  LHV V +   I+ Q+F RG   + L    +V  N+ GT ITF PDP+IF D
Sbjct: 131 SVVNALSTWLHVEVRKDGNIYHQEFMRGKTKTELAVIGQVDPNQTGTTITFSPDPEIFED 190

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L    +  ++L+ +V       +E        +KE +Y  GG+  +++    
Sbjct: 191 TV-FLFDTLAHRLRELSFLNKKVSITLIDARE-------DKKEVYYHTGGIYDFVKYINR 242

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           ++  +  E    + EK G     VE ++ + +     + SY N I T EGGTHESG + A
Sbjct: 243 SKESLHPEPIYFEAEKDGVQ---VEVSMQYNDGYVENLFSYANNIHTHEGGTHESGFKAA 299

Query: 338 LTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR    YA      +    ++  +D+      ++SV + EP+F GQTKTKL + + +  
Sbjct: 300 LTRVANDYARKNNILKANEANLSGEDIREGLTAVISVKVPEPQFEGQTKTKLGNSEIRSI 359

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454
           V++   +    +  +NP    K++E  I+ S  R   RK RE   RK+A+    LPGKLA
Sbjct: 360 VDSITGEGLSAFFEENPAIGKKVIEKSIQASRAREAARKARELTRRKSALEVSALPGKLA 419

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS   A   E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  ++I  N +I 
Sbjct: 420 DCSWKEAELCEMYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDRILGNAEIR 479

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++ A+G      +  E  RY K++IMTDADVDGAHI  LLLTFF++ M  L+E  ++++
Sbjct: 480 AMITAMGTGISEDFDIEKARYHKLVIMTDADVDGAHIRILLLTFFFRYMKPLLENNYVYI 539

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPLF++ +G    Y +  E   K+ +E    G+ ++EI R+KGLGEM A QL ET MD
Sbjct: 540 AQPPLFKVKKGKDIHYVYSNEELAKLQDEI---GRDRVEIQRYKGLGEMNAEQLWETTMD 596

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             KRT+L+V +   +       +    LMG   + R +FIQ+ A ++ ++ 
Sbjct: 597 PAKRTILQVTMEDAIK----ADELFTILMGDVVEPRREFIQDNAQYVRNLD 643


>gi|291532646|emb|CBL05759.1| DNA gyrase subunit B [Megamonas hypermegale ART12/1]
          Length = 665

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/659 (39%), Positives = 383/659 (58%), Gaps = 23/659 (3%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
           D  +    +   +Y A+ I+ILEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +
Sbjct: 25  DEESAEVTAVEGDYGANQIQILEGLEAVRKRPGMYIGSTSARGLHHLVYEVVDNSIDEAL 84

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AGY   IEV++  +  +TV DNGRGIPV+ H     K  +E++LT LHAGGKF  S Y++
Sbjct: 85  AGYCTHIEVTIHKDNSITVTDNGRGIPVDMHE--SGKPAVEVVLTVLHAGGKFGGSGYKV 142

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS  + V V R   I    F +G+   PL+   +  ++ GT + F 
Sbjct: 143 SGGLHGVGVSVVNALSTNMEVKVKRDGKIHEITFEKGVTKEPLKVVGQT-DETGTLVHFV 201

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PD +IF +   +D   L    +  ++L+  +    + ++          +E FYF GG+ 
Sbjct: 202 PDAEIFDETV-YDYDTLRHRLRELSFLNRGITIILTDER-----PEEVRQETFYFEGGIS 255

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
           ++++    N+ +I+ E       K  T    VE A+ +       I S+ N I T+EGGT
Sbjct: 256 SFVEHLNRNKEVINPEPVYFNGTKDTT---VVEIALQYNTSYSENIYSFVNNINTEEGGT 312

Query: 330 HESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G + ALTR    +A      +    +++ +D+      ++S+ +REP+F GQTKTKL
Sbjct: 313 HLAGFKSALTRAANDFARRQGIIKNNEDNLVGEDIREGLTCVISIKLREPQFEGQTKTKL 372

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
            + + +  V++ + +    Y  +NP+ + K++E  I  S  R   RK RE   RK A+  
Sbjct: 373 GNSEVRGIVDSIVSEGLSEYFEENPVISKKIIEKSIMASRAREAARKARELTRRKNALEV 432

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADCS       E+++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +K
Sbjct: 433 SSLPGKLADCSVKDPEQAEIYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDK 492

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           I NN++I  ++ A G    S++     RY K+IIMTDADVDGAHI +LLLTFFY+ M  L
Sbjct: 493 ILNNEEIRTMITAFGSGIGSEFDITKRRYGKIIIMTDADVDGAHIRTLLLTFFYRYMRPL 552

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           IE  H+++  PPL++I +G    Y + +E   + L+E  + G   I + R+KGLGEM   
Sbjct: 553 IENGHVYIAQPPLYQIRKGRSHWYTYSDEELAQKLDEIGRDG---ITVQRYKGLGEMNPE 609

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           QL ET MD  KRT+L+V +       ++       LMG K + R +FI+E A+ + ++ 
Sbjct: 610 QLWETTMDPEKRTVLQVHL----REAEEADSIFTILMGDKVEPRRRFIEEHANLVRNLD 664


>gi|91772465|ref|YP_565157.1| DNA gyrase subunit B [Methanococcoides burtonii DSM 6242]
 gi|91711480|gb|ABE51407.1| DNA gyrase subunit B [Methanococcoides burtonii DSM 6242]
          Length = 632

 Score =  658 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/648 (40%), Positives = 385/648 (59%), Gaps = 21/648 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           SD+YDA+ I++LEGLE VR RP MYIG  D + LHHL  EV+DN++DE +AG+   I+VS
Sbjct: 2   SDDYDATHIQVLEGLEAVRKRPSMYIGSVDTRGLHHLVYEVVDNSIDEALAGFCKNIDVS 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +G +TVVD+GRGIPV+NHPK+  KS LE++LT LHAGGKFD S Y++SGGLHGVG+S
Sbjct: 62  INADGSVTVVDDGRGIPVDNHPKY-KKSALEVVLTVLHAGGKFDKSNYKVSGGLHGVGVS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ + V V R   ++ Q++ RG P S +      +   GT+ TF PD +IF    
Sbjct: 121 VVNALSEWMEVEVKRDGKLYYQRYERGAPTSDVTVIGDAKG-TGTKSTFMPDSQIFETT- 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L+   +  A+L+  ++   +  +E        E++ F + GG+ ++++   ++R
Sbjct: 179 EFSYGTLITRLRELAFLNKGIRITITDSREE-----ELEQDVFEYEGGIISFVEHLNQSR 233

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
           + +       + EK+GT    VE A+ + +   E   S+ N I T EGGTH  G + ALT
Sbjct: 234 TALHKTPIYFEREKEGTI---VEIAMQYTDSYGEYVYSFANNINTYEGGTHLIGFKTALT 290

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
           R    Y +     K    +  +D+      I+SV + EP+F GQTKTKL + + +  V++
Sbjct: 291 RVANDYIKKNNVVKGDEKLTGEDIREGLAAIISVKLTEPQFEGQTKTKLGNSELKGIVDS 350

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            + +    Y+ +NP  A  + +  ++    R   +K RE   RK+A+    LPGKLADCS
Sbjct: 351 MVSEGLSEYMEENPKVAVIIFQKALDARRAREAAKKARELTRRKSALEIGTLPGKLADCS 410

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           +     +E+++VEGDSAGGSAKQ RNR  QA+LP RGKI+NV  A   K+  N +++ L+
Sbjct: 411 EKDPSVSEVYLVEGDSAGGSAKQGRNRRFQAILPFRGKIINVEKARLSKVLKNNEVLSLI 470

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G      Y  E  RY KVIIMTDADVDGAHI +L+LTFF++ M  LI+  ++++  P
Sbjct: 471 TAMGTGIAEDYNIEKARYHKVIIMTDADVDGAHIRTLILTFFFRYMAPLIDAGYVYIAQP 530

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI +G    Y + +      LEE  ++      + R+KGLGEM   QL ET M+ + 
Sbjct: 531 PLYRIKKGKAEHYVYSDRELAAKLEEIGENNTY---VQRYKGLGEMNPEQLWETTMNPDT 587

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           RTLL+V ++          +  + LMG +   R  FIQ+ A  + ++ 
Sbjct: 588 RTLLQVTMDD----AAAADEMFSVLMGDEVAPRKAFIQKYAKEVVNLD 631


>gi|310657321|ref|YP_003935042.1| DNA gyrase subunit b [Clostridium sticklandii DSM 519]
 gi|308824099|emb|CBH20137.1| DNA gyrase (subunit B) [Clostridium sticklandii]
          Length = 641

 Score =  656 bits (1693), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/655 (39%), Positives = 390/655 (59%), Gaps = 21/655 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
                 +  Y A  I++LEGL+PVR RPGMYIG T  + LHHL  EV+DNA+DE +AG+ 
Sbjct: 3   TNENKVNHAYGAEQIQVLEGLDPVRKRPGMYIGSTGSRGLHHLVYEVVDNAIDEALAGHC 62

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I VS+D +  +TV DNGRGIPVE HPK   KST+E +LT LHAGGKF    Y++SGGL
Sbjct: 63  DKIYVSIDPDNGITVKDNGRGIPVEIHPK-TGKSTVETVLTVLHAGGKFGAGGYKVSGGL 121

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS EL V V     I+ Q+F+ G+P + LE   +    RGT + F PD  
Sbjct: 122 HGVGVSVVNALSKELIVEVKINGKIYRQEFAYGVPQTELEIVGETTE-RGTCVRFMPDDA 180

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           +F +   +    L    +  A+L+  +       +E  +K        F++ GGL  +++
Sbjct: 181 VFEET-QYKYDTLEHRLRELAFLNKGIHITLEDKREDLQKVKE-----FHYTGGLVEFVR 234

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N+S I  ++   + ++      TVE A+ + +     + S+ N I T EGG H +G
Sbjct: 235 YINKNKSPIHDDVIYFEKKQ---GDYTVEIAMQYTDAYVENVYSFANNINTHEGGMHLTG 291

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            + ALTR I  YA+ +     +  +++ +D+      ++S+ + +P++ GQTKTKL +  
Sbjct: 292 FKTALTRVINDYAKKSNFLKSKEDNLMGEDIREGLTAVVSIKLPDPQYEGQTKTKLGNPQ 351

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
           A+  VE    D    +L +NP  A  +++  +     R   +K RE   RK+ +    LP
Sbjct: 352 ARSAVETISGDNITIFLDENPASARIIVDKALRAQRAREAAKKARELTRRKSVLESTSLP 411

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC++     +E+++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  +  ++I ++
Sbjct: 412 GKLADCAEKDPVKSEIYLVEGDSAGGSAKQGRDRKTQAILPLRGKILNVEKSRLDRILSS 471

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
            +I +++ A GC   +++ EE LRY K++IMTDADVDGAHI +L+LTFF++ M  LIE+ 
Sbjct: 472 DEIRNMITAFGCGISNEFDEEKLRYHKIVIMTDADVDGAHIRTLILTFFFRYMRPLIEKG 531

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPLFRI +G +  Y + ++   + LEE  +  +  +E+ R+KGLGEM A QL +
Sbjct: 532 YVYIAQPPLFRIKKGRREEYVYSDKELNERLEEIGRSNQ--VELQRYKGLGEMNAEQLWD 589

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T M+   RTLLRV I           D  + LMG K + R  FIQE A ++ ++ 
Sbjct: 590 TTMNPATRTLLRVTIED----ASMADDIFSMLMGDKVEPRRNFIQENAKYVKNLD 640


>gi|268318257|ref|YP_003291976.1| DNA gyrase, B subunit [Rhodothermus marinus DSM 4252]
 gi|262335791|gb|ACY49588.1| DNA gyrase, B subunit [Rhodothermus marinus DSM 4252]
          Length = 649

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/659 (42%), Positives = 383/659 (58%), Gaps = 22/659 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
              + + NY AS+I+ILEGLE VR RP MYIG    + LHHL  EV+DNA+DE +AGY +
Sbjct: 3   TRPAEASNYVASNIQILEGLEAVRKRPAMYIGDVGIRGLHHLVYEVVDNAIDEAMAGYCD 62

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V+++ +G +TV DNGRGIPV+ HP    +S LE+++TTLHAGGKFD STY++SGGLH
Sbjct: 63  RIAVTINEDGSITVEDNGRGIPVDEHP-TEKRSALEVVMTTLHAGGKFDKSTYKVSGGLH 121

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK--RGTRITFRPDP 213
           GVG+S VNALS +L  TV R   ++ Q ++ G P SP+E+   +R     GT + F PDP
Sbjct: 122 GVGVSCVNALSRKLIATVKRDGYVWRQTYAYGKPTSPVERVRPMREDEETGTIVQFWPDP 181

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF     F    L +  +  AYL+  V+      +E  E       EE+YF GGL  ++
Sbjct: 182 TIFKTV-EFRFDTLAERLRELAYLNRGVRISIEDRREEDESL---RYEEYYFEGGLVEFV 237

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           Q   E R+ I  E+     E        VE A+ + +     + S+ N I T EGGTH +
Sbjct: 238 QYLDETRTPIHDEVIYIAGEADDV---VVEVALRYNDGYAENVLSFVNNINTHEGGTHVA 294

Query: 333 GLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR +K YAE     +     +  +D       ++SV + EP+F GQTKTKL + 
Sbjct: 295 GFRTALTRTLKAYAEKNNLLKNFKGELSGEDFREGLTAVISVKVPEPQFEGQTKTKLGNS 354

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           + Q  V   + +    +L  +P EA ++L+ VI  ++ R+  RK RE V RK A+    L
Sbjct: 355 EVQGIVAGIVSEHLSRWLEDHPREARRILDKVILAAQARVAARKARELVQRKNALNGSSL 414

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC+       ELF+VEGDSAGGSAKQARNR  QA+LPLRGKILNV  A  +KI  
Sbjct: 415 PGKLADCASRDPSKCELFLVEGDSAGGSAKQARNREFQAILPLRGKILNVEKARLDKILE 474

Query: 510 NQQIMDLVQALGC---RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           N +I ++V ALG     T   +    LRY ++IIMTDADVDGAHI +LLLTFFY+++  L
Sbjct: 475 NDEIRNIVTALGTGLATTEEDFDLSKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQLRPL 534

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           +E  ++++  PPL+R+  G    YA  +E  ++I+EE       +  I R+KGLGEM   
Sbjct: 535 VEGGYIYIALPPLYRVKVGKTERYAWSDEELRQIVEELTDGQPQRAVIQRYKGLGEMNPE 594

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           QL ET M+   R L +V +              + LMG   + R KFI+  A +   + 
Sbjct: 595 QLWETTMNPETRILQQVTVED----AAAADRIFSILMGDAVEPRRKFIERNARYAT-LD 648


>gi|308171897|ref|YP_003918602.1| DNA gyrase subunit B [Bacillus amyloliquefaciens DSM 7]
 gi|307604761|emb|CBI41132.1| DNA gyrase (subunit B) [Bacillus amyloliquefaciens DSM 7]
 gi|328909965|gb|AEB61561.1| DNA gyrase (subunit B) [Bacillus amyloliquefaciens LL3]
          Length = 640

 Score =  656 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/655 (40%), Positives = 389/655 (59%), Gaps = 20/655 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            A +   ++YD + I++LEGLE VR RPGMYIG T+ K LHHL  E++DN++DE +AGY 
Sbjct: 1   MAMEQQQNSYDENQIQVLEGLEAVRKRPGMYIGSTNSKGLHHLVWEIVDNSIDEALAGYC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             I + ++ +  +TV DNGRGIPV    K   +  +E+I+T LHAGGKFD S Y++SGGL
Sbjct: 61  TDINIEIEKDNSITVKDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFDGSGYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS  L VTV R   I  Q + RG+P++ LE      +K GT   F PDP+
Sbjct: 120 HGVGASVVNALSTTLDVTVHRDGKIHYQAYERGVPVADLEVIGDT-DKTGTITHFVPDPE 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   +D   L    +  A+L+  V       +E  E+        +++ GG+K+Y++
Sbjct: 179 IFKETTVYDYDLLSNRVRELAFLTKGVNITIEDKREGQERKNE-----YHYEGGIKSYVE 233

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               ++ +I  E    + EK G    TVE A+ + +     I S+ N I T EGGTHE+G
Sbjct: 234 YLNRSKEVIHEEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAG 290

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            +  LTR I  YA       +   ++  DD+      I+S+   +P+F GQTKTKL + +
Sbjct: 291 FKTGLTRVINDYARRKGIFKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSE 350

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLP 450
           A+   +       + +L++NP  A K++E  +  +  R+  +K      RK+A+    LP
Sbjct: 351 ARTITDTLFSSALETFLLENPDSARKIVEKGLMAARARMAAKKARELTRRKSALEISNLP 410

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N
Sbjct: 411 GKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSN 470

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
            ++  ++ ALG      +  E  RY KV+IMTDADVDGAHI +LLLTFFY+ M ++IE  
Sbjct: 471 NEVRSMITALGTGIGEDFNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMREIIENG 530

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPL+++ QG +  YA++++   ++L+E  +  K    + R+KGLGEM A+QL E
Sbjct: 531 YVYIAQPPLYKVQQGKRVEYAYNDKQLDELLKELPQSPKPG--LQRYKGLGEMNATQLWE 588

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T MD   RTLL+V +   +    D  ++   LMG K + R  FI+  A ++ ++ 
Sbjct: 589 TTMDPATRTLLQVNLEDAM----DADETFEMLMGDKVEPRRNFIEANARYVKNLD 639


>gi|154684524|ref|YP_001419685.1| DNA gyrase subunit B [Bacillus amyloliquefaciens FZB42]
 gi|154350375|gb|ABS72454.1| GyrB [Bacillus amyloliquefaciens FZB42]
          Length = 638

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/652 (40%), Positives = 388/652 (59%), Gaps = 20/652 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +   ++YD + I++LEGLE VR RPGMYIG T+ K LHHL  E++DN++DE +AGY   I
Sbjct: 2   EQQQNSYDENQIQVLEGLEAVRKRPGMYIGSTNSKGLHHLVWEIVDNSIDEALAGYCTDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            + ++ +  +TV DNGRGIPV    K   +  +E+I+T LHAGGKFD S Y++SGGLHGV
Sbjct: 62  NIEIEKDNSITVKDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFDGSGYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS  L VTV R   I  Q + RG+P++ LE      +K GT   F PDP+IF 
Sbjct: 121 GASVVNALSTTLDVTVHRDGKIHYQAYERGVPVADLEVIGDT-DKTGTITHFVPDPEIFK 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   +D   L    +  A+L+  V       +E  E+        +++ GG+K+Y++   
Sbjct: 180 ETIVYDYDLLSNRVRELAFLTKGVNITIEDKREGQERKNE-----YHYEGGIKSYVEYLN 234

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            ++ ++  E    + EK G    TVE A+ + +     I S+ N I T EGGTHE+G + 
Sbjct: 235 RSKEVVHEEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKT 291

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
            LTR I  YA       +   ++  DD+      I+S+   +P+F GQTKTKL + +A+ 
Sbjct: 292 GLTRVINDYARRKGIFKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEART 351

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKL 453
             +       + +L++NP  A K++E  +  +  R+  +K      RK+A+    LPGKL
Sbjct: 352 ITDTLFSSALETFLLENPDSARKIVEKGLMAARARMAAKKARELTRRKSALEISNLPGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++
Sbjct: 412 ADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEV 471

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ ALG      +  E  RY KV+IMTDADVDGAHI +LLLTFFY+ M ++IE  +++
Sbjct: 472 RSMITALGTGIGEDFNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMREIIENGYVY 531

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           +  PPL+++ QG +  YA++++   ++L+E  +  K    + R+KGLGEM A+QL ET M
Sbjct: 532 IAQPPLYKVQQGKRVEYAYNDKQLDELLKELPQSPKPG--LQRYKGLGEMNATQLWETTM 589

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D   RTLL+V +   +    D  ++   LMG K + R  FI+  A ++ ++ 
Sbjct: 590 DPATRTLLQVNLEDAM----DADETFEMLMGDKVEPRRNFIEANARYVKNLD 637


>gi|238926604|ref|ZP_04658364.1| DNA gyrase subunit B [Selenomonas flueggei ATCC 43531]
 gi|238885550|gb|EEQ49188.1| DNA gyrase subunit B [Selenomonas flueggei ATCC 43531]
          Length = 685

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/652 (39%), Positives = 373/652 (57%), Gaps = 23/652 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            +   +Y A  I++LEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +AGY + +
Sbjct: 52  TAVDADYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVYEVVDNSIDEALAGYCDTV 111

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V++  +  +TV DNGRGIPV+ H        +E++LT LHAGGKF    Y++SGGLHGV
Sbjct: 112 GVTIHKDNSITVTDNGRGIPVDMHE--SGMPAVEVVLTVLHAGGKFGGDGYKVSGGLHGV 169

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS E+ V V R   IF+  FSRG+  + L +     +  GTR+ F PDP+IF 
Sbjct: 170 GVSVVNALSTEMDVEVRRDGKIFAISFSRGVTTTKLHEIG-TSDTTGTRVHFVPDPEIFT 228

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               +    L    +  A+L+  +    + ++           E F+F GG+++++    
Sbjct: 229 VTT-YSFDTLKHRLRELAFLNHGITITLTDER-----GAEVRSETFHFDGGIRSFVSHLN 282

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
             +  I+ E       K  T    VE A+ + +     I S+ N I T+EGGTH +G ++
Sbjct: 283 RKKETINEEPIYFNGVKDDT---VVEIAMQYNDSYQENIYSFVNNINTEEGGTHLAGFKI 339

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR    +A       ++  ++  +D+      ++S+ +REP+F GQTKTKL + + + 
Sbjct: 340 ALTRAANDFARRLNVLKEKDGNLSGEDVREGLTAVISLKVREPQFEGQTKTKLGNSEVRG 399

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            V++ + +    Y  +NP    K+L+  +  S  R   RK RE   RK A+    LPGKL
Sbjct: 400 IVDSIVTEGLTEYFEENPAVTKKVLDKALMASRAREAARKARELTRRKNALEVSSLPGKL 459

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS       E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI  N +I
Sbjct: 460 ADCSVKDPDQCEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKIFANAEI 519

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A G     ++     RY K+IIMTDADVDGAHI +LLLTFFY+ M  L++  H++
Sbjct: 520 RTMITAFGTGIGEEFDLAKRRYSKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVDHGHVY 579

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           +  PPL++I +  K  Y + ++ + K L+E  + G   + I R+KGLGEM   QL ET M
Sbjct: 580 IAQPPLYQIRKDKKHFYTYSDDEQAKKLDELGRDG---VTIQRYKGLGEMNPEQLWETTM 636

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +   RT+L+V         +   +    LMG K + R +FI+E A  + ++ 
Sbjct: 637 NPEGRTMLQV----GAEDAEAADELFTILMGDKVEPRRQFIEENAKLVRNLD 684


>gi|225386349|ref|ZP_03756113.1| hypothetical protein CLOSTASPAR_00093 [Clostridium asparagiforme
           DSM 15981]
 gi|225047531|gb|EEG57777.1| hypothetical protein CLOSTASPAR_00093 [Clostridium asparagiforme
           DSM 15981]
          Length = 638

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/649 (38%), Positives = 378/649 (58%), Gaps = 19/649 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + Y A  I+ILEGLE VR RPGMYIG T  + LHHL  E++DNA+DE +AGY + IEV++
Sbjct: 3   EQYGADQIQILEGLEAVRKRPGMYIGSTSARGLHHLVYEIVDNAVDEALAGYCDSIEVTI 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +  +TV+D+GRGIPV    K      +E++ T LHAGGKF N  Y++SGGLHGVG SV
Sbjct: 63  NEDNSITVIDDGRGIPVGIQKKA-GLPAVEVVFTILHAGGKFGNGGYKVSGGLHGVGASV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPDPKIFGDKA 220
           VNALS+ L V V     I+ Q++ RG  + PL+   K      GT + F PD +IF +  
Sbjct: 122 VNALSEWLEVQVYLDGNIYQQRYERGKVMYPLKIVGKCEPHEHGTHVRFLPDKEIFEET- 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   L    +  A+L+  +K     D+E   K        F++ GG++ ++    + +
Sbjct: 181 EFDYDTLKIRLRETAFLTKNLKITLRDDREEEVKEKT-----FHYEGGIREFVAYLNKGK 235

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + +  ++   +  ++G +   VE ++   +     I ++ N I T EGGTH +G + ALT
Sbjct: 236 TPLYEQVIYCEGTREGVY---VEVSLQHNDSYTEGIYTFVNNINTPEGGTHLTGFKNALT 292

Query: 340 RGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           +    YA   +  +        +D+      I+SV I +P+F GQTK KL + +A+  V+
Sbjct: 293 KTFNDYARKNKLLKENEDSLSGEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARTAVD 352

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           N + +   ++L QNP  A  + E  ++ +      R+ +    RK+A+  + LPGKLADC
Sbjct: 353 NVVSEQLTYFLEQNPSVAKSICEKSILAQRARAAARKARDLTRRKSALDGVALPGKLADC 412

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S       E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV  A  ++I  N +I  +
Sbjct: 413 SDKNPVNCEIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARMDRIYGNAEIKAM 472

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A G      +    LRY K+IIMTDADVDGAHI++LLLTF Y+ M +LI+Q +++L  
Sbjct: 473 ITAFGTGIHEDFDITKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPELIKQGYVYLAQ 532

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+++ +  +  YA+ +E    IL +  + G  K  I R+KGLGEM A QL ET MD  
Sbjct: 533 PPLYKVEKNKRIWYAYSDEELNSILTDVGRDGNNK--IQRYKGLGEMDAEQLWETTMDPE 590

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +R LLRV ++ +  S  +   +   LMG + + R +FI+  A  + ++ 
Sbjct: 591 RRILLRVTMDDETQS--ELDLTFTTLMGDQVEPRREFIESNAKRVQNLD 637


>gi|328551706|gb|AEB22198.1| DNA gyrase subunit B [Bacillus amyloliquefaciens TA208]
          Length = 638

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/652 (40%), Positives = 388/652 (59%), Gaps = 20/652 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +   ++YD + I++LEGLE VR RPGMYIG T+ K LHHL  E++DN++DE +AGY   I
Sbjct: 2   EQQQNSYDENQIQVLEGLEAVRKRPGMYIGSTNSKGLHHLVWEIVDNSIDEALAGYCTDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            + ++ +  +TV DNGRGIPV    K   +  +E+I+T LHAGGKFD S Y++SGGLHGV
Sbjct: 62  NIEIEKDNSITVKDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFDGSGYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS  L VTV R   I  Q + RG+P++ LE      +K GT   F PDP+IF 
Sbjct: 121 GASVVNALSTTLDVTVHRDGKIHYQAYERGVPVADLEVIGDT-DKTGTITHFVPDPEIFK 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   +D   L    +  A+L+  V       +E  E+        +++ GG+K+Y++   
Sbjct: 180 ETTVYDYDLLSNRVRELAFLTKGVNITIEDKREGQERKNE-----YHYEGGIKSYVEYLN 234

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            ++ +I  E    + EK G    TVE A+ + +     I S+ N I T EGGTHE+G + 
Sbjct: 235 RSKEVIHEEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKT 291

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
            LTR I  YA       +   ++  DD+      I+S+   +P+F GQTKTKL + +A+ 
Sbjct: 292 GLTRVINDYARRKGIFKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEART 351

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKL 453
             +       + +L++NP  A K++E  +  +  R+  +K      RK+A+    LPGKL
Sbjct: 352 ITDTLFSSALETFLLENPDSARKIVEKGLMAARARMAAKKARELTRRKSALEISNLPGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++
Sbjct: 412 ADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEV 471

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ ALG      +  E  RY KV+IMTDADVDGAHI +LLLTFFY+ M ++IE  +++
Sbjct: 472 RSMITALGTGIGEDFNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMREIIENGYVY 531

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           +  PPL+++ QG +  YA++++   ++L+E  +  K    + R+KGLGEM A+QL ET M
Sbjct: 532 IAQPPLYKVQQGKRVEYAYNDKQLDELLKELPQSPKPG--LQRYKGLGEMNATQLWETTM 589

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D   RTLL+V +   +    D  ++   LMG K + R  FI+  A ++ ++ 
Sbjct: 590 DPATRTLLQVNLEDAM----DADETFEMLMGDKVEPRRNFIEANARYVKNLD 637


>gi|160941457|ref|ZP_02088792.1| hypothetical protein CLOBOL_06348 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435603|gb|EDP13370.1| hypothetical protein CLOBOL_06348 [Clostridium bolteae ATCC
           BAA-613]
          Length = 637

 Score =  654 bits (1688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/649 (38%), Positives = 386/649 (59%), Gaps = 20/649 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + Y A  I+ILEGLE VR RPGMYIG T  + LHHL  E++DNA+DE +AGY + I+V++
Sbjct: 3   EQYGADQIQILEGLEAVRKRPGMYIGSTSARGLHHLVYEIVDNAVDEALAGYCDSIDVTI 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +  +TV+D+GRGIPV+   K      +E++ T LHAGGKF N  Y++SGGLHGVG SV
Sbjct: 63  NEDNSITVMDDGRGIPVDIQKKA-GLPAVEVVFTILHAGGKFGNGGYKVSGGLHGVGASV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS+ L V V +   I+ Q++ RG    PL+   K    + GTR+TF PD +IF +  
Sbjct: 122 VNALSEWLEVQVYKDGNIYQQRYERGKVTYPLKIVGKCGPEQHGTRVTFLPDKEIFEETV 181

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +D   L    +  A+L+  +K     D++        +++ F++ GG+K ++    + +
Sbjct: 182 -YDYDTLKIRLRETAFLTKNLKIILKDDRD------EKKEKVFHYEGGIKEFVTYLNKGK 234

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + I  ++   +  ++G +   VE ++   +     I ++ N I T EGGTH +G + ALT
Sbjct: 235 TPIYDQVIYCEGTREGVY---VEVSMQHNDSYTENIYTFVNNINTPEGGTHLTGFKNALT 291

Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           +    YA   +  +    ++  +D+      I+SV I +P+F GQTK KL + +A+  V+
Sbjct: 292 KTFNDYAREKKLLKDSEDNLSGEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARAAVD 351

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           N + +   ++L QNP  A  + E  ++ +      R+ +    RK+A+  + LPGKLADC
Sbjct: 352 NIVSEQLTYFLEQNPAVAKSMCEKSILAQRARAAARKARDLTRRKSALDGMALPGKLADC 411

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S       E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV  A  ++I  N +I  +
Sbjct: 412 SDKNPENCEIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARMDRIYGNAEIKAM 471

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A G      +    LRY K+IIMTDADVDGAHI++LLLTF Y+ M +LI+Q +++L  
Sbjct: 472 ITAFGTGIHDDFDISKLRYHKIIIMTDADVDGAHISTLLLTFIYRFMPELIKQGYVYLAQ 531

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+++ +  K  YA+ ++    IL+E  +    K  I R+KGLGEM A QL ET MD  
Sbjct: 532 PPLYKVEKNKKVWYAYSDDELNSILKEIGRDNSNK--IQRYKGLGEMDAEQLWETTMDPE 589

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +R LLRV +++   +  +   +   LMG + + R +FI+  A  + ++ 
Sbjct: 590 RRILLRVTMDE--ETTSEVDLTFTTLMGDQVEPRREFIEANAKKVKNLD 636


>gi|138893684|ref|YP_001124137.1| DNA gyrase subunit B [Geobacillus thermodenitrificans NG80-2]
 gi|134265197|gb|ABO65392.1| DNA gyrase subunit B [Geobacillus thermodenitrificans NG80-2]
          Length = 640

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/653 (40%), Positives = 387/653 (59%), Gaps = 21/653 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            Q     YDAS I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY   
Sbjct: 4   EQRVEQAYDASQIQVLEGLEAVRKRPGMYIGSTGPKGLHHLVWEIVDNSIDEALAGYCTE 63

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V++  +  +T+ DNGRGIPV+ H +   +  +E+I+T LHAGGKF    Y++SGGLHG
Sbjct: 64  IHVTIGEDNSITIADNGRGIPVDVH-EATGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS+ L V V R   I  QK+ RG P + L+  ++  ++ GT   F+PDP+IF
Sbjct: 123 VGASVVNALSEWLEVYVYRDGKIHYQKYERGEPRTDLQVIDET-DRTGTTTRFKPDPEIF 181

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   FD   L    +  A+L+  +K   + ++    K        +++ GG+++Y++  
Sbjct: 182 TETTEFDYETLATRLRELAFLNRGLKITLTDERVDNRKNE------YFYEGGIRSYVRHL 235

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
              R ++  E      E+ G     VE A+ + +     I S+ N I T EGGTHESG +
Sbjct: 236 NRTREVLHEEPIYIAGERDGI---AVEIALQYNDGYTSNIYSFVNNIHTHEGGTHESGFK 292

Query: 336 VALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
           +ALTR I  YA   Q  +    ++  +D+      I+S+    P+F GQTKTKL + DA+
Sbjct: 293 MALTRIINDYARKQQIFKDNDANLTGEDVREGLTAIVSIKHPAPQFEGQTKTKLGNSDAR 352

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
              +    + F+ +L+++P  A K++E  ++        ++ +    RK+A+    LPGK
Sbjct: 353 TVTDAVFSEQFETFLLEHPAVARKIVEKGMMAARARVAAKKARELTRRKSALEISNLPGK 412

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS      +EL++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N +
Sbjct: 413 LADCSSRDPSISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNE 472

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           +  ++ ALG      +     RY KVIIMTDADVDGAHI +LLLTFFY+ M +LIE+ ++
Sbjct: 473 VRAIITALGTGIGEDFDISKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRELIERGYI 532

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL++I QG +  YA+++   +KIL E       K  I R+KGLGEM   QL ET 
Sbjct: 533 YIAQPPLYKIEQGKQVRYAYNDRQLEKILAELPAQ--PKPMIQRYKGLGEMNPEQLWETT 590

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           M+   RTLL+V +   +    D  ++   LMG K + R +FI+E A ++ ++ 
Sbjct: 591 MNPETRTLLQVSLQDAI----DADETFEILMGDKVEPRRQFIEENARYVKNLD 639


>gi|304437923|ref|ZP_07397869.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304369063|gb|EFM22742.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 685

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/652 (38%), Positives = 371/652 (56%), Gaps = 23/652 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            +   +Y A  I++LEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +AGY + +
Sbjct: 52  TAVDADYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVYEVVDNSIDEALAGYCDTV 111

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V++  +  +TV DNGRGIPV+ H        +E++LT LHAGGKF    Y++SGGLHGV
Sbjct: 112 GVTIHKDNSITVTDNGRGIPVDMHE--SGMPAVEVVLTVLHAGGKFGGDGYKVSGGLHGV 169

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS E+ V V R   IF+  FSRG+  + L +     +  GTR+ F PDP+IF 
Sbjct: 170 GVSVVNALSTEMDVEVRRDGKIFAISFSRGVTTTKLHEIG-TSDTTGTRVHFVPDPEIFT 228

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               +    L    +  A+L+  +    + ++           E F+F GG+++++    
Sbjct: 229 VTT-YSFDTLKHRLRELAFLNHGITITLTDER-----GTEVRSETFHFDGGIRSFVSHLN 282

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
             +  I+ E       K       VE A+ + +     I S+ N I T+EGGTH +G ++
Sbjct: 283 RKKETINEEPIYFNGVKDDI---VVEIAMQYNDSYQENIYSFVNNINTEEGGTHLAGFKI 339

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR    +A        +  ++  +D+      ++S+ +REP+F GQTKTKL + + + 
Sbjct: 340 ALTRAANDFARRLNVLKDKDGNLSGEDVREGLTAVISLKVREPQFEGQTKTKLGNSEVRG 399

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            V++ + +    Y  +NP    K+L+  +  S  R   RK RE   RK A+    LPGKL
Sbjct: 400 IVDSIVTEGLTEYFEENPAVTKKVLDKALMASRAREAARKARELTRRKNALEVSSLPGKL 459

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS       E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI  N +I
Sbjct: 460 ADCSVKDPDQCEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKIFANAEI 519

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A G     ++     RY K+IIMTDADVDGAHI +LLLTFFY+ M  L++  H++
Sbjct: 520 RTMITAFGTGIGEEFDLAKRRYSKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVDHGHVY 579

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           +  PPL++I +  K  Y + ++ + K L+E  + G   + I R+KGLGEM   QL ET M
Sbjct: 580 IAQPPLYQIRKDKKHFYTYSDDEQAKKLDEIGRDG---VTIQRYKGLGEMNPEQLWETTM 636

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +   RT+L+V         +   +    LMG K + R +FI+E A  + ++ 
Sbjct: 637 NPEGRTMLQV----GAEDAEAADELFTILMGDKVEPRRQFIEENAKLVRNLD 684


>gi|304315545|ref|YP_003850690.1| DNA gyrase subunit beta [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777047|gb|ADL67606.1| DNA gyrase, B subunit [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
          Length = 633

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/651 (39%), Positives = 383/651 (58%), Gaps = 24/651 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  + Y AS I+ILEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AGY   I+
Sbjct: 2   ANEETYGASQIQILEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNSIDEALAGYCKNID 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V +  +  ++V+D+GRGIP + HP+   KS +E+ LT LHAGGKF+N  Y++SGGLHGVG
Sbjct: 62  VVIHKDNSVSVIDDGRGIPTDIHPQ-TGKSGVEVALTVLHAGGKFNNDVYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS  L V V +   ++ QK+ RG+P S L+      ++ GT ITF PD +IF  
Sbjct: 121 LSVVNALSKRLEVIVKQNGKVYEQKYERGVPKSDLKIIGDT-DETGTTITFAPDDEIFET 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              +D   L +  +  ++L+  V+     +++  E       + F++ GG+  +++    
Sbjct: 180 L-EYDYDILSQRLRELSFLNKGVRIRLMDERDGKE-------DVFHYEGGIVEFVKYLNR 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N+ ++  E    +++        VE A+ + +     I S+ N I T EGGTH  G + A
Sbjct: 232 NKEVLHPEPIYMESKSDT---YEVEVAMQYNDSYTENIFSFANNIDTREGGTHLIGFKAA 288

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LT+ I  YA           ++  +D+      I+SV +  P+F GQTKTKL + + +  
Sbjct: 289 LTKVINDYARKFNIIKDNDKNLQGEDVREGLTAIISVKLMNPQFEGQTKTKLGNSEMRSI 348

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454
           V++ + +    ++ +NP  +  +LE     +  R   RK RE   RK+A+    LPGKLA
Sbjct: 349 VDSVVTEKLTAFMEENPSLSKVILEKATSAARAREAARKARELTRRKSALESTSLPGKLA 408

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS+  A   EL++VEGDSAGGSAK  R+   QA+LPLRGKILNV  A  ++I ++ +I 
Sbjct: 409 DCSEKDASKCELYLVEGDSAGGSAKMGRDSRYQAILPLRGKILNVEKARLDRILSSDEIK 468

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++ ALG    S +    LRY KV+IMTDADVDG+HI +LLLTFFY+ M  LIE  ++++
Sbjct: 469 AMITALGTGIGSDFDISKLRYHKVVIMTDADVDGSHIRTLLLTFFYRFMRPLIENGNVYI 528

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL++I +  K  YA+ ++    IL+E    G+    + R+KGLGEM A QL +T MD
Sbjct: 529 AQPPLYKIEKNKKVYYAYSDKELDNILKEI---GRENYNVQRYKGLGEMDAEQLWDTTMD 585

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             KRT+L+V ++  +       +    LMG K + R +FI++ A  + ++ 
Sbjct: 586 PEKRTMLKVSLDDAI----AADEIFTILMGDKVEPRREFIEKYAKTVRNLD 632


>gi|311070653|ref|YP_003975576.1| DNA gyrase subunit B [Bacillus atrophaeus 1942]
 gi|310871170|gb|ADP34645.1| DNA gyrase subunit B [Bacillus atrophaeus 1942]
          Length = 638

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/652 (39%), Positives = 387/652 (59%), Gaps = 20/652 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +   ++YD + I++LEGLE VR RPGMYIG T+ K LHHL  E++DN++DE +AGY + I
Sbjct: 2   EQQQNSYDENQIQVLEGLEAVRKRPGMYIGSTNSKGLHHLVWEIVDNSIDEALAGYCSEI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            + ++ +  +TV DNGRGIPV    K   +  +E+I+T LHAGGKFD S Y++SGGLHGV
Sbjct: 62  NIEIEKDNSITVRDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFDGSGYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS  L VTV R   I  Q + RG+P++ +E   +  +  GT   F PDP+IF 
Sbjct: 121 GASVVNALSTTLDVTVHRDGKIHYQAYERGVPMADVEVIGET-DTTGTITHFVPDPEIFT 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   +D   L    +  A+L+  VK      +E  E+        + + GG+K+Y++   
Sbjct: 180 ETTVYDYDLLSSRVRELAFLTKGVKITIEDKREEKEQKNE-----YCYEGGIKSYVEYLN 234

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            ++ ++  E    +  K G    TVE A+ + +     I S+ N I T EGGTHE+G + 
Sbjct: 235 RSKEVVHEEPIYIEGTKDGI---TVEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKT 291

Query: 337 ALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
            LTR I  YA      +    ++  DD+      I+S+   +P+F GQTKTKL + +A+ 
Sbjct: 292 GLTRVINDYARKKGIFKESDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEART 351

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKL 453
             +    +  + +L +NP  A K+++  +  +  R+  +K      RK+A+    LPGKL
Sbjct: 352 ITDALFSEALETFLFENPDSARKVIDKGLMAARARMAAKKARELTRRKSALEISNLPGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++
Sbjct: 412 ADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEV 471

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ ALG      +  E  RY KV+IMTDADVDGAHI +LLLTFFY+ M  +IE  +++
Sbjct: 472 RSMITALGTGIGEDFNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRQIIENGYIY 531

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           +  PPL+++ QG +  YA++++  +++L    +  K    + R+KGLGEM A+QL ET M
Sbjct: 532 IAQPPLYKVQQGKRVEYAYNDKQLEEVLSTLPQTPKPG--LQRYKGLGEMNATQLWETTM 589

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D + RTLL+V +   +    D  ++   LMG K + R  FI+  A ++ ++ 
Sbjct: 590 DPDTRTLLQVTLEDAM----DADETFEMLMGDKVEPRRNFIEANARYVKNLD 637


>gi|323342250|ref|ZP_08082482.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322463362|gb|EFY08556.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 639

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/655 (39%), Positives = 378/655 (57%), Gaps = 21/655 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            +N     +Y +S I++LEGLE VR RPGMYIG T  + LHHL  E++DN +DE +AG+A
Sbjct: 1   MSNTKVDHSYTSSDIQVLEGLEAVRKRPGMYIGTTASRGLHHLVWEIVDNGIDEALAGFA 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             I V++D +  ++V DNGRGIPV  H K    ST E I T LHAGGKF    Y++SGGL
Sbjct: 61  TEIIVNVDKDNVISVSDNGRGIPVGIHAK-TGVSTAETIFTVLHAGGKFGGGAYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS+ L V +      +  +F  G  ++   K+    +K+GT + F+ DP 
Sbjct: 120 HGVGASVVNALSEWLEVKIYLDGIEYYLRFEEGGKVAVPLKEVGKTDKKGTTVRFKADPT 179

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   F    L    +  A+L+  +K  +  ++E  E   +     F +  GL+ Y+Q
Sbjct: 180 IFTETTEFSHDVLRDRLRQIAFLNKGIKLVFQDEREPEETRHLE----FVYEDGLREYVQ 235

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               N+S I  EI   + E++G     VE ++ + +   P I S+CN I T EGGTHE G
Sbjct: 236 YMNANKSPIHEEIVYCEGEEEGIL---VEVSMQYNDGFTPNIYSFCNNINTHEGGTHEDG 292

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            ++ALTR I  YA+      K     + DD+      I+SV   +P++ GQTKTKL + +
Sbjct: 293 FKLALTRVINNYAKEHNLLKKDDDGFLGDDVREGLTAIISVKHPDPQYEGQTKTKLGNSE 352

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            ++ V +   +  + +L+++P +A  +++     S+ R+  RK RE   RK A+    LP
Sbjct: 353 VRKIVSSVFGEQLERFLMEHPDDAKIIVDKAAIASKARVAARKARELTRRKGALEVSSLP 412

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS       E++IVEGDSAGGSAKQ R+   QA+LPLRGK++NV  A   KI +N
Sbjct: 413 GKLADCSNRNPSECEIYIVEGDSAGGSAKQGRDSKFQAILPLRGKVINVEKARLHKIFDN 472

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
            +I  ++ A G     +   + LRY K+IIMTDADVDGAHI +LLLTFFY+ +  LIE  
Sbjct: 473 NEIRMMITAFGTGVSDEMDIDKLRYHKIIIMTDADVDGAHIRTLLLTFFYRFLRPLIENG 532

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
            +++  PPL++I++G K  YA++EE   ++  EF      +  + R+KGLGEM   QL +
Sbjct: 533 FVYIAQPPLYKISRGNKIAYAYEEEELDELKVEFGD----RFNVQRYKGLGEMNPEQLWD 588

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T MD   RTL++V I+  +    +       LMG +   R +FIQ  A + D + 
Sbjct: 589 TTMDPETRTLIQVTIDDAM----EADVIFETLMGDEVAPRREFIQANAEYAD-LD 638


>gi|196249898|ref|ZP_03148594.1| DNA gyrase, B subunit [Geobacillus sp. G11MC16]
 gi|196210774|gb|EDY05537.1| DNA gyrase, B subunit [Geobacillus sp. G11MC16]
          Length = 640

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/653 (40%), Positives = 387/653 (59%), Gaps = 21/653 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            Q     YDAS I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY   
Sbjct: 4   EQRVKQAYDASQIQVLEGLEAVRKRPGMYIGSTGPKGLHHLVWEIVDNSIDEALAGYCTE 63

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V++  +  +T+ DNGRGIPV+ H +   +  +E+I+T LHAGGKF    Y++SGGLHG
Sbjct: 64  IHVTIGEDNSITIADNGRGIPVDVH-EATGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS+ L V V R   I  QK+ RG P + L+  ++  ++ GT   F+PDP+IF
Sbjct: 123 VGASVVNALSEWLEVYVYRDGKIHYQKYERGEPRTDLQVIDET-DRTGTTTRFKPDPEIF 181

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   FD   L    +  A+L+  +K   + ++    K        +++ GG+++Y++  
Sbjct: 182 TETTEFDYETLATRLRELAFLNRGLKITLTDERVDNRKNE------YFYEGGIRSYVRHL 235

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
              R ++  E      E+ G     VE A+ + +     I S+ N I T EGGTHESG +
Sbjct: 236 NRTREVLHEEPIYIAGERDGI---AVEIALQYNDGYTSNIYSFVNNIHTHEGGTHESGFK 292

Query: 336 VALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
           +ALTR I  YA   Q  +    ++  +D+      I+S+    P+F GQTKTKL + DA+
Sbjct: 293 MALTRIINDYARKQQIFKDNDANLTGEDVREGLTAIVSIKHPAPQFEGQTKTKLGNSDAR 352

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
              +    + F+ +L+++P  A K++E  ++        ++ +    RK+A+    LPGK
Sbjct: 353 TVTDAVFSEQFETFLLEHPAVARKIVEKGMMAARARVAAKKARELTRRKSALEISNLPGK 412

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS      +EL++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N +
Sbjct: 413 LADCSSRDPSISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNE 472

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           +  ++ ALG      +     RY KVIIMTDADVDGAHI +LLLTFFY+ M +LIE+ ++
Sbjct: 473 VRAIITALGTGIGEDFDISKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRELIERGYI 532

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL++I QG +  YA+++   +KIL E       K  I R+KGLGEM   QL ET 
Sbjct: 533 YIAQPPLYKIEQGKQVRYAYNDRQLEKILAELPAQ--PKPMIQRYKGLGEMNPEQLWETT 590

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           M+   RTLL+V +   +    D  ++   LMG K + R +FI+E A ++ ++ 
Sbjct: 591 MNPETRTLLQVSLQDAI----DADETFEILMGDKVEPRRQFIEENARYVKNLD 639


>gi|116754690|ref|YP_843808.1| DNA gyrase, B subunit [Methanosaeta thermophila PT]
 gi|116666141|gb|ABK15168.1| DNA gyrase subunit B [Methanosaeta thermophila PT]
          Length = 628

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/645 (40%), Positives = 383/645 (59%), Gaps = 26/645 (4%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YDAS I+++EGLE VR RP MYIG TD   LHHL  EV+DN++DE +AGY   I V + G
Sbjct: 6   YDASHIKVMEGLEAVRHRPSMYIGSTDVHGLHHLVYEVVDNSVDEAMAGYCKEISVVIHG 65

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G ++V D+GRGIPV+ HP++ N+  +EI++T LHAGGKFD+ TY +SGGLHGVG+SVVN
Sbjct: 66  DGSVSVKDDGRGIPVDIHPQY-NRPAVEIVMTVLHAGGKFDHDTYHVSGGLHGVGVSVVN 124

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS+ L V V+R+  ++ Q++ RG P+S L++   V    GT + F+PDP+IF     F 
Sbjct: 125 ALSEWLEVEVSREGRVYRQRYERGRPVSDLQETG-VSENTGTTVRFKPDPEIFEVT-DFS 182

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L    +  A+L+  +K   + ++    K        F++ GG+ +++Q   +++ ++
Sbjct: 183 FDVLSSRLRELAFLNRGLKISITDERSGRSKT-------FHYDGGIISFVQYLNKSKEVL 235

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
                     +      +VE A+ +       + ++ N I T EGGTH SG R ALT+ +
Sbjct: 236 HPNPIYFSRVRDDV---SVEVAMQYNTSYNESVFTFANNINTREGGTHLSGFRAALTKTV 292

Query: 343 KKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
             +    +  +    +  DDL    V ++SV + +P+F GQTKT+L +   +  VE+ + 
Sbjct: 293 NDFVREKKLLKGDAKLTGDDLREGLVAVVSVRLPDPQFEGQTKTRLGNSAVRGLVESLVS 352

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNI 460
           +    Y   NP  A  ++E   E    R   RK +E   RKTA+    LPGKLADC +  
Sbjct: 353 EGLMEYFELNPQVAEAIVEKATEAMRAREAARKAKEITRRKTALTSSGLPGKLADCVERD 412

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +EL+IVEG+SAGGSAKQ RNR  QAVLPLRGKILNV  A  +K+  N++I +L+ AL
Sbjct: 413 PAKSELYIVEGESAGGSAKQGRNRHFQAVLPLRGKILNVERARLDKMLKNEEIRNLITAL 472

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           G      +     RY K+IIMTDADVDG+HI +LLLTFFY+ M  LIE  ++++  PPL+
Sbjct: 473 GTGIGDDFDITKARYHKIIIMTDADVDGSHIRTLLLTFFYRYMQPLIEAGYVYIAQPPLY 532

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           ++ +G    YA+ +E   K+LE+      GK  + R+KGLGEM   QL ET M+  KRTL
Sbjct: 533 QVRKGKSVKYAYSDEELAKLLED------GKAVVQRYKGLGEMNPEQLWETTMNPEKRTL 586

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           LRV +   +    +  +  + LMG + + R  FI+  A  + ++ 
Sbjct: 587 LRVTLKDAV----EADEIFSVLMGEQVEPRRVFIETHAREVRNLD 627


>gi|226226219|ref|YP_002760325.1| DNA gyrase subunit B [Gemmatimonas aurantiaca T-27]
 gi|226089410|dbj|BAH37855.1| DNA gyrase subunit B [Gemmatimonas aurantiaca T-27]
          Length = 658

 Score =  653 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/663 (39%), Positives = 393/663 (59%), Gaps = 16/663 (2%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
           +S A   Q   + Y A SI +L+GLE VR RPGMYIG T  + LHHL  EV+DN++DE +
Sbjct: 3   NSNAPEAQEDENEYGAHSITVLKGLEAVRKRPGMYIGSTSARGLHHLVYEVVDNSIDEAL 62

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AG+A  +EV++  +  ++V D+GRGIPV+ HP       +E+ +T LHAGGKFD +TY++
Sbjct: 63  AGFAKRVEVTIHADDSISVEDDGRGIPVDVHP-IEKLPGVELAMTVLHAGGKFDKNTYKV 121

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITF 209
           SGGLHGVG+SVVNALSD L V + R        F+RG+  + L+    V   + GT++ F
Sbjct: 122 SGGLHGVGVSVVNALSDVLKVWIKRDGKEHFMDFARGVTTTKLKTLRNVPAKETGTKVWF 181

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +PD  IF +   ++ A L    +  A+L+  ++     ++    K G P +E F+  GGL
Sbjct: 182 KPDATIFQETTRYEWATLANRLRELAFLNKGIQITLRDERPDEMKDGQPREEVFFARGGL 241

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           + ++     N+  +  ++    TE+       +E A+ + +     + S+ N I T EGG
Sbjct: 242 REFVVFLTGNKKPLHQDVVYLDTERDDI---GIEMALQYNDSYADNVFSFVNNINTHEGG 298

Query: 329 THESGLRVALTRGIKKYAEL----TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           TH +G + ALT  I KY E      +  + I +  DD+      +LSV +REP+F GQTK
Sbjct: 299 THLTGFKSALTSVINKYIERSSNLNKKDKEIRLSGDDVREGLTAVLSVKVREPQFEGQTK 358

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
           TKL + +A+  V + + +    YL ++P  A  +++  I  S  R   RK R+   +K A
Sbjct: 359 TKLGNSEAEGAVRSVMNELLSQYLEEHPKTANAIIDKAISASRAREAARKARDLTRKKNA 418

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADCS +     EL++VEGDSAGGSAKQ RNR+ QA+LPLRGKI+NV  A 
Sbjct: 419 LDVAALPGKLADCSLSDPALCELYLVEGDSAGGSAKQGRNRNFQAILPLRGKIINVEKAR 478

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            +K+ +N++I  ++ A+G   + ++     RY+K+IIMTDADVDGAHI +LLLTFF+++M
Sbjct: 479 FDKVLSNEEIRTIITAIGTGIKDEFDLGKTRYQKIIIMTDADVDGAHIRTLLLTFFFRQM 538

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGE 622
            +LI+  ++++  PPL+R+ +G +  YA+ E+ +    E      G+G I + R+KGLGE
Sbjct: 539 RELIDAGYMYIAQPPLYRVAKGKEEFYAYSEKERDSFSERLGGPEGRGNIMVQRYKGLGE 598

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           M  +QL +T MD   RT+LRV +   +        +   LMG   + R +FI+  A F+ 
Sbjct: 599 MNPAQLWKTTMDPETRTMLRVTMEDAV----LADQTFQTLMGDDVEPRRQFIESNARFVS 654

Query: 683 DVG 685
           ++ 
Sbjct: 655 NLD 657


>gi|83588881|ref|YP_428890.1| DNA gyrase, B subunit [Moorella thermoacetica ATCC 39073]
 gi|83571795|gb|ABC18347.1| DNA gyrase, B subunit [Moorella thermoacetica ATCC 39073]
          Length = 634

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/651 (39%), Positives = 377/651 (57%), Gaps = 24/651 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
              + YDAS I+ILEGLE VR RPGMYIG T  + LH L  E++DN++DE +AG+ + IE
Sbjct: 3   QVRNEYDASQIQILEGLEAVRRRPGMYIGNTGVRGLHQLVFELVDNSIDEALAGFCDRIE 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  NG LTV DNGRGIPV+ H K      +E+ LT LHAGGKF  + Y+++GGLHGVG
Sbjct: 63  VTIHENGSLTVADNGRGIPVDIHEK-TGLPAVEVALTILHAGGKFGGNGYKVAGGLHGVG 121

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+ L + V R   I+ Q++ RG  +S L+   K +   GT +TF PD +IF D
Sbjct: 122 LSVVNALSEWLEIKVKRNGKIYHQEYRRGQKVSELKVIGKTKG-TGTSVTFYPDGEIFED 180

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    + +  Q  ++L+  VK  +  ++  +E         +Y  GGL  +++   +
Sbjct: 181 LV-FQDEIIGRRLQELSFLNRGVKIVFRDERNESETT-------YYHTGGLIDFVRHLNK 232

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++++ ++      EK        E AI + +     I SY N I T EGG+HE G + A
Sbjct: 233 NKTVLFNKPLYFSGEKDDVQ---AEIAIQYNDGYNELILSYANNIHTVEGGSHEIGFKTA 289

Query: 338 LTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR I  YA      +    ++  +D+      ++SV + EP+F GQTKTKL + + +  
Sbjct: 290 LTRVINDYARRFNLLKDAEANLSGEDIREGLTAVISVKVLEPQFEGQTKTKLGNTEVRGI 349

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIER-SEERLRRRKQREVNRKTAIRKLRLPGKLA 454
           V++ + +    YL +NP    ++++  +         R+ +    RK A+    LPGKLA
Sbjct: 350 VDSLVAENLSAYLEENPTIGRRIVDKALNAFRAREAARKARELTRRKNALEITSLPGKLA 409

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC+       ELF+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI NN++I 
Sbjct: 410 DCTHKDPAMAELFLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKILNNEEIR 469

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++ ALG      +     RY K I+M DADVDG+HI +LLLTFFY+ M  LI + ++++
Sbjct: 470 TIITALGTGIGDDFNINKARYHKTILMADADVDGSHIRTLLLTFFYRYMRPLITEGYIYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL+++ +G    Y +++   +K L+E +     + EI R+KGLGEM   QL ET M+
Sbjct: 530 AQPPLYKVYRGKVERYLYNDAELEKFLKEHEGE---RWEIQRYKGLGEMNPEQLWETTMN 586

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              RTLL+V +   +    +     N LMG + + R +FIQ+ A  + ++ 
Sbjct: 587 PESRTLLQVNLEDAM----EADAIFNILMGDRVEPRREFIQQHAHEVRNLD 633


>gi|323705855|ref|ZP_08117427.1| DNA topoisomerase IV, B subunit [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534851|gb|EGB24630.1| DNA topoisomerase IV, B subunit [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 633

 Score =  652 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/648 (39%), Positives = 383/648 (59%), Gaps = 24/648 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + Y AS I+ILEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AGY   I+V +
Sbjct: 5   ETYGASQIQILEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNSIDEALAGYCKNIDVII 64

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  ++V+D+GRGIP + HP+   KS +E+ LT LHAGGKF+N  Y++SGGLHGVG+SV
Sbjct: 65  HKDNSVSVIDDGRGIPTDIHPQ-TGKSGVEVALTVLHAGGKFNNDVYKVSGGLHGVGLSV 123

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  L V V +   ++ QK+ RG+P + L    +  ++ GT ITF PD +IF     
Sbjct: 124 VNALSKNLEVIVKQNGKVYQQKYERGVPKTDLTVIGET-DETGTTITFSPDGEIFETL-E 181

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +D   L +  +  ++L+  VK     +++  E       + F++ GG+  +++    N+ 
Sbjct: 182 YDYDVLSQRLRELSFLNKGVKIRLVDERDGKE-------DVFHYEGGIVEFVKYLNRNKE 234

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
           ++  E    +++        VE A+ + +     I S+ N I T EGGTH  G + ALT+
Sbjct: 235 VLHPEPIYMESKSDT---YEVEVAMQYNDSYTENIFSFANNIDTREGGTHLIGFKTALTK 291

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  YA       +   ++  +D+      I+SV +  P+F GQTKTKL + + +  V++
Sbjct: 292 VINDYARKFNIIKENDKNLQGEDVREGLTAIISVKLMNPQFEGQTKTKLGNSEMRSIVDS 351

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            + +    ++ +NP  +  +LE     +  R   RK RE   RK+A+    LPGKLADCS
Sbjct: 352 VVTEKLTAFMEENPSLSKVILEKATSAARAREAARKARELTRRKSALESTSLPGKLADCS 411

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           +  A   EL++VEGDSAGGSAK  R+   QA+LPLRGKILNV  A  ++I ++ +I  ++
Sbjct: 412 EKDASKCELYLVEGDSAGGSAKMGRDSKYQAILPLRGKILNVEKARLDRILSSDEIKAMI 471

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG    S +    LRY KV+IMTDADVDG+HI +LLLTFFY+ M  LIE  ++++  P
Sbjct: 472 TALGTGIGSDFDISKLRYHKVVIMTDADVDGSHIRTLLLTFFYRFMRPLIENGNIYIAQP 531

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL++I +  K  YA+ ++    IL+E    G+    + R+KGLGEM A QL +T MD  K
Sbjct: 532 PLYKIEKNKKVYYAYSDKELDNILKEI---GRENYNVQRYKGLGEMDAEQLWDTTMDPEK 588

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           RT+L+V ++  +       +    LMG K + R +FI++ A  + ++ 
Sbjct: 589 RTMLKVSLDDAI----AADEIFTILMGDKVEPRREFIEKYAKTVRNLD 632


>gi|302388606|ref|YP_003824427.1| DNA gyrase subunit B [Thermosediminibacter oceani DSM 16646]
 gi|302199234|gb|ADL06804.1| DNA gyrase subunit B [Thermosediminibacter oceani DSM 16646]
          Length = 637

 Score =  652 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/646 (40%), Positives = 386/646 (59%), Gaps = 20/646 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YD + I +LEGLE VR+RPGMYIG TD + LHHL  EV+DN++DE +AG+   I V+++ 
Sbjct: 7   YDETKIEVLEGLEHVRLRPGMYIGSTDSRGLHHLVYEVVDNSIDEALAGFCKNILVTINK 66

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G +TV D+GRGIPV+ HPK   K  LE+ LT LHAGGKF    Y++SGGLHGVG+SVVN
Sbjct: 67  DGSITVDDDGRGIPVKIHPKV-GKPALEVALTMLHAGGKFGTGGYKVSGGLHGVGVSVVN 125

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS  L V V R    + Q++ RG P++ ++K  +  +  GT+ITF PD +IF D   F+
Sbjct: 126 ALSKWLEVEVKRDGFKYFQRYERGKPVTEVKKIGEASD-TGTKITFMPDDQIFEDT-SFN 183

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L +  + +A+L+  +K      +         +++ F++ GG+ ++++    N+ ++
Sbjct: 184 YDILAQRLREQAFLNRGLKIEIKDLR-------TGKEQVFHYEGGIVSFVKYLNRNKDVL 236

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
             +    +   +      VE A+ + +     + S+ N I T EGGTH  G + ALTR I
Sbjct: 237 HEDPIYMRAASQ-EGEWEVEVALQYNDSYAENVLSFANNINTQEGGTHLVGFKSALTRSI 295

Query: 343 KKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             YA      +    ++  DD+      ++SV +  P+F GQTKTKL + + +  VE+ +
Sbjct: 296 NDYARKMNLLKEQDPNLSGDDVREGLTAVISVKLVNPQFEGQTKTKLGNSEMRGIVESVV 355

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQN 459
            D  + +L +NP  A  ++E  I  +  R   RK RE V RK A+ +  LPGKLADC + 
Sbjct: 356 GDAMNRFLEENPSVARVIVEKAISAARAREAARKARELVRRKNALDRTSLPGKLADCREK 415

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
                EL++VEGDSAGGSAKQ R+   QA+LPLRGKILNV  A  +KI  N++I  ++ A
Sbjct: 416 DPRLCELYLVEGDSAGGSAKQGRDPRFQAILPLRGKILNVEKARLDKILGNEEIRAMITA 475

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           LG      +  E LRY K+I+M DADVDGAHI +LLLTF Y+ M  LIE   +++  PPL
Sbjct: 476 LGTGIGDDFDIEKLRYHKIILMADADVDGAHIRTLLLTFLYRYMRPLIEAGMVYIAQPPL 535

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           +++++G +  YA+ +E  + ILE   K  + K E+ RFKGLGEM A QL +T M+   RT
Sbjct: 536 YQVSKGKEVYYAYSDEELKAILERLGKD-RDKAEVKRFKGLGEMNADQLWDTTMNPKTRT 594

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +L+V +   +    +  +    LMG K + R +FI E A+ + ++ 
Sbjct: 595 ILKVNLEDAI----EADEIFTILMGEKVEPRRQFIFEHAAEVRNLD 636


>gi|167461556|ref|ZP_02326645.1| DNA gyrase subunit B [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322381377|ref|ZP_08055380.1| DNA gyrase subunit B-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321154953|gb|EFX47224.1| DNA gyrase subunit B-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 636

 Score =  652 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/648 (41%), Positives = 384/648 (59%), Gaps = 22/648 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + YD S I++LEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AG+   I+V++
Sbjct: 6   NTYDESQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVWEVVDNSIDEALAGFCTKIDVTI 65

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  +TV+DNGRGIPV  HPK   K TLE++LT LHAGGKF    Y++SGGLHGVG+SV
Sbjct: 66  HEDNSITVIDNGRGIPVGEHPKL-KKPTLEVVLTVLHAGGKFGGEGYKVSGGLHGVGVSV 124

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+ L  TV R   I+ Q+F RG+P   ++         GT ITF+PD +IF +   
Sbjct: 125 VNALSESLVATVKRDGHIYQQEFKRGVPQYGVKVIGDTDEY-GTVITFKPDAEIFTETTV 183

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +D   L    +  A+L+  ++     ++             + + GG+ ++++   +NR 
Sbjct: 184 YDYEVLQSRIRELAFLNKELEINLKDER-------TGASHSYKYEGGIISFVEYLNQNRE 236

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            ++      +  K       VE AI + +     I S+ N I T EGGTHESG + ALTR
Sbjct: 237 PLNQPPIYVEGNKDNIQ---VEIAIQYNDNFNENIYSFANNIHTHEGGTHESGFKSALTR 293

Query: 341 GIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  YA  T   +  +     DD+      I+SV I +P+F GQTKTKL + + +  VE+
Sbjct: 294 VINDYARKTNVLKDSNSNLSGDDVREGIAAIISVKIPDPQFEGQTKTKLGNSEVRGIVES 353

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            L +    +L +NP  A +++E  ++ +  R   RK RE   RK+A+    LPGKLADCS
Sbjct: 354 LLAEKLQEFLEENPSTAKRIMEKSMQAARAREAARKARELTRRKSALEVSSLPGKLADCS 413

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
              A  +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  ++I +N +I  ++
Sbjct: 414 SKDAAISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDRILSNMEIRAII 473

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG      +     RY K+IIMTDADVDGAHI +LLLTFF++ M  LIE  ++++  P
Sbjct: 474 TALGTGISEDFDLSKARYHKIIIMTDADVDGAHIRTLLLTFFFRYMRKLIEAGYVYIAQP 533

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+++ +     YA++++ + +I++EF +    K+ + R+KGLGEM A QL ET MD   
Sbjct: 534 PLYKLEKNKTVRYAYNDKQRAEIMKEFGE--GSKVNVQRYKGLGEMNAGQLWETTMDPES 591

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           RTLL+V I   +          + LMG   + R  FI E A ++ ++ 
Sbjct: 592 RTLLQVNIEDAIK----ADAIFDMLMGDNVEPRRNFIHEHAKYVTNLD 635


>gi|167038684|ref|YP_001661669.1| DNA gyrase subunit B [Thermoanaerobacter sp. X514]
 gi|300913756|ref|ZP_07131073.1| DNA gyrase, B subunit [Thermoanaerobacter sp. X561]
 gi|307723227|ref|YP_003902978.1| DNA gyrase subunit B [Thermoanaerobacter sp. X513]
 gi|166852924|gb|ABY91333.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter sp. X514]
 gi|300890441|gb|EFK85586.1| DNA gyrase, B subunit [Thermoanaerobacter sp. X561]
 gi|307580288|gb|ADN53687.1| DNA gyrase, B subunit [Thermoanaerobacter sp. X513]
          Length = 633

 Score =  651 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/651 (40%), Positives = 382/651 (58%), Gaps = 24/651 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  + Y AS I+ILEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AGY   I 
Sbjct: 2   AKDETYTASQIQILEGLEAVRKRPGMYIGSTGSRGLHHLVYEVVDNSIDEALAGYCKNIV 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +  +TV D+GRGIP + HPK   K  +E+ LT LHAGGKF+N  Y++SGGLHGVG
Sbjct: 62  VTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVALTMLHAGGKFNNDAYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS++L V V ++  IF Q + RG+P + LE   +      T ITF+PD +IF +
Sbjct: 121 VSVVNALSEKLEVVVKQRGKIFRQTYERGVPKTDLEIIGETEETG-TTITFKPDKEIFEE 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L +  +  A+L+  +      +++  E       E F + GG+ ++++    
Sbjct: 180 TV-FNYDVLAQRLRELAFLNKGINIRLIDERDGKE-------EVFNYEGGIISFVKYLNR 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N+ ++  E    + +        VE  + + +     I S+ N I T EGGTH  G + A
Sbjct: 232 NKEVLHEEPIYMEAK---NTDYEVEVCMQYNDTYTENIFSFANNIDTREGGTHLVGFKSA 288

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LT+ I  YA           ++  +D+      I+SV ++ P+F GQTKTKL + + +  
Sbjct: 289 LTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFEGQTKTKLGNSEMRSI 348

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454
           VEN + +    +L +NP  A  ++E   + +  R   RK RE   RK+A+    LPGKLA
Sbjct: 349 VENVVIEKLSAFLEENPSVAKVIVEKATQAARAREAARKARELTRRKSALENTTLPGKLA 408

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS+      ELF+VEGDSAGGSAK  RN   QA+LPLRGKILNV  A  +KI +N++I 
Sbjct: 409 DCSEKDPSKCELFLVEGDSAGGSAKTGRNSRFQAILPLRGKILNVEKARLDKILSNEEIR 468

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++ ALG     ++    LRY KV+IMTDADVDG+HI +LLLTFFY+ M  LIE  ++++
Sbjct: 469 AMITALGTGIGDEFDISKLRYHKVVIMTDADVDGSHIRTLLLTFFYRFMRPLIENGNVYI 528

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL++IT+G K  YA+ +    +IL E    G+    + R+KGLGEM A QL +T MD
Sbjct: 529 AQPPLYKITKGKKVYYAYSDRELDRILNEI---GRENYTVQRYKGLGEMNADQLWDTTMD 585

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             KRT+L+V +   +       +    LMG K + R +FI++ A  + ++ 
Sbjct: 586 PEKRTMLKVTLEDAI----AADEIFTILMGDKVEPRREFIEKHAKTVRNLD 632


>gi|27262246|gb|AAN87404.1| DNA gyrase subunit B [Heliobacillus mobilis]
          Length = 641

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/651 (39%), Positives = 372/651 (57%), Gaps = 24/651 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +    YDAS I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AGY + IE
Sbjct: 10  NGESTYDASQIQVLEGLEAVRRRPGMYIGSTSARGLHHLVYEIVDNSIDEALAGYCDTIE 69

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V +  +  + V DNGRGIPV+ HPK   K  +E+ LT LHAGGKF    Y++SGGLHGVG
Sbjct: 70  VIIHEDNSIEVSDNGRGIPVDIHPKM-GKPAVEVALTVLHAGGKFGGEGYKVSGGLHGVG 128

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS++L VTV R   +  Q + RG+ ++ L+         GT I F+PD  IF +
Sbjct: 129 LSVVNALSEKLKVTVRRNGKVHEQYYERGVTMTDLKVVGNA-ESTGTTIYFKPDGLIFEE 187

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              +    L    +  ++L+  VK      +         ++  F   GG+  +++    
Sbjct: 188 L-EYSYETLSHRLRELSFLNRGVKITLKDLR-------TGQESIFAHEGGIIDFVKFLNR 239

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVA 337
           N+ LI   +   + EK+G H   VE A+ + +   E    Y N I T EGGTHESG + A
Sbjct: 240 NKDLIHPHVIYFQNEKEGVH---VEMALQYNDGYSETLFSYANNINTQEGGTHESGFKTA 296

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR I  Y        +   ++  +D+      ++SV +REP+F GQTKTKL + + +  
Sbjct: 297 LTRVINDYGRRINQIKENDSNLSGEDIREGITAVISVKVREPQFEGQTKTKLGNSEVRGI 356

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454
            ++ + +    YL +NP    K++E  +     R   RK RE   RK+A+    LPGKLA
Sbjct: 357 TDSCVTEGLSTYLEENPSVGKKVIEKALSAMRAREAARKARELTRRKSALESTSLPGKLA 416

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS       EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  +  +KI +N++I 
Sbjct: 417 DCSFKDPSMCELYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRLDKILSNEEIR 476

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            L+ ALG      +     RY +V +MTDADVDG+HI +LLLTFF++ M  LIE  ++++
Sbjct: 477 ALITALGTGIGEDFDLSKARYHRVCLMTDADVDGSHIRTLLLTFFFRHMKPLIENGYVYI 536

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL+++ +G    Y + +    + L+   K+G+  + I R+KGLGEM   QL +T MD
Sbjct: 537 AQPPLYQVKKGRDVRYYYHDNELNQYLD---KNGRDGVTIQRYKGLGEMNPEQLWDTTMD 593

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              RT+L+V +        + +     LMG + + R +FIQ  A  + ++ 
Sbjct: 594 PEHRTILQVSMED----AAEAESIFTTLMGDRVEPRREFIQSHAKDVRNLD 640


>gi|225181142|ref|ZP_03734588.1| DNA gyrase, B subunit [Dethiobacter alkaliphilus AHT 1]
 gi|225168111|gb|EEG76916.1| DNA gyrase, B subunit [Dethiobacter alkaliphilus AHT 1]
          Length = 650

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/660 (38%), Positives = 383/660 (58%), Gaps = 17/660 (2%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
                 N   + +YD S I++LEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +
Sbjct: 2   AEEKNNNPLNNGHYDESHIQVLEGLEAVRRRPGMYIGSTGARGLHHLVFEVVDNSIDEAL 61

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AG+ + I ++++ +  +TV D+GRGIPV   P+   +  +E++LT LHAGGKF    Y++
Sbjct: 62  AGHCDDIVITIEKDNIITVSDDGRGIPVGIQPQ-TGRPAVEVVLTVLHAGGKFGGEGYKV 120

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS+ L V V R   I    F+RG  +  L    K +   GT+I F+
Sbjct: 121 SGGLHGVGVSVVNALSEWLEVEVHRDGKIHQMSFARGAIVKELTVTGKTKK-TGTQIRFK 179

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGL 269
           PD ++F     F    L K  +  A+L+  ++   + ++ E+ ++     KE F + GG+
Sbjct: 180 PDAEVFETV-EFSYETLSKRLRELAFLNKGIRITVADERTELTDETNEKVKETFKYDGGI 238

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGG 328
           K++++   +N+  +  +    + EK+   +  VE A+ + +   + I S+ N I T EGG
Sbjct: 239 KSFVEFLNKNKEPLHKKAIYLEQEKEDCCQ--VEIALQYHDGYNDLILSFANNIHTHEGG 296

Query: 329 THESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           THE+G + ALTR I  YA      +    ++  +D+      ++SV + EP+F GQTKTK
Sbjct: 297 THEAGFKSALTRLINDYARKNNLLKENESNVSGEDIREGLTAVISVKLLEPQFEGQTKTK 356

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIR 445
           L + + +  V++ L +    YL +NP  A +L+E  V         R+ +    RK+A+ 
Sbjct: 357 LGNSEMRGIVDSFLYEELGAYLGENPQMAKRLVEKSVSAARAREAARKARELARRKSALE 416

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC+       EL++VEGDSAGGSAKQ R+R  QA+LPLRGKI+NV  A  +
Sbjct: 417 VTSLPGKLADCASRDPAMCELYLVEGDSAGGSAKQGRDRRFQAILPLRGKIINVEKARLD 476

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           KI  N++I  ++ ALG    + +     RY K+IIMTDADVDG+HI +LLLTFFY+ M  
Sbjct: 477 KILANEEIRTIITALGTGISTDFDLAKARYHKIIIMTDADVDGSHIRTLLLTFFYRYMQP 536

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           LI+  ++++  PPL+ + +  K  Y + E+   ++L+E  + G     + R+KGLGEM  
Sbjct: 537 LIQAGYVYIAQPPLYLVKKKQKEHYVYTEDQLDRLLKEIGREGN---SLQRYKGLGEMNP 593

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL  T MD  KRT+L+V +   +       D    LMG K + R  FI+  A+ + ++ 
Sbjct: 594 EQLWSTTMDPEKRTILQVTMEDAIR----ADDMFTVLMGDKVEPRRVFIESHANQVRNLD 649


>gi|239624129|ref|ZP_04667160.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520515|gb|EEQ60381.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 637

 Score =  651 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/649 (38%), Positives = 383/649 (59%), Gaps = 20/649 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + Y A  I+ILEGLE VR RPGMYIG T  + LHHL  E++DNA+DE +AGY + IEV++
Sbjct: 3   EQYGADQIQILEGLEAVRKRPGMYIGSTSARGLHHLVYEIVDNAVDEALAGYCDSIEVTI 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +  +TVVD+GRGIPV    K      +E++ T LHAGGKF N  Y++SGGLHGVG SV
Sbjct: 63  NEDNSITVVDDGRGIPVGIQKKA-GLPAVEVVFTILHAGGKFGNGGYKVSGGLHGVGASV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKA 220
           VNALS+ L V V +   I+ Q++ RG    PL+   K   ++ GT++TF PD +IF +  
Sbjct: 122 VNALSEWLEVQVYKDGDIYQQRYERGKVTYPLKIVGKCSPDQHGTKVTFLPDKEIFEETI 181

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +D   L    +  A+L+  ++     D++        +++ F++ GG+K ++    + +
Sbjct: 182 -YDYDTLKIRLRETAFLTKNLRITLKDDRD------EKKEKTFHYEGGIKEFVTYLNKGK 234

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + +  ++   +  K+G +   VE ++   +     I ++ N I T EGGTH +G + ALT
Sbjct: 235 TPLYDQVIYCEGSKEGVY---VEVSMQHNDSYTENIYTFVNNINTPEGGTHLTGFKNALT 291

Query: 340 RGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           +    YA   +  +        +D+      I+S+ + EP+F GQTK KL + +A+  V+
Sbjct: 292 KTFNDYARKNKLLKDNEDSLSGEDIREGLTAIISIKVEEPQFEGQTKQKLGNSEARSAVD 351

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           N + +   ++L QNP  A  + E  ++ +      R+ +    RK+A+  + LPGKLADC
Sbjct: 352 NIVSEQLTYFLEQNPAIAKAMCEKSIMAQRARAAARKARDLTRRKSALDGMALPGKLADC 411

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S       E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV  A  ++I  N +I  +
Sbjct: 412 SDKNPENCEIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARMDRIYGNAEIKAM 471

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A G      +    LRY K+IIMTDADVDGAHI++LLLTF Y+ M +LI+Q +++L  
Sbjct: 472 ITAFGTGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPELIKQGYVYLAQ 531

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+++ +  K  YA+ ++    IL +  +    K  I R+KGLGEM A QL ET MD  
Sbjct: 532 PPLYKVEKSKKVWYAYSDDELNSILTDIGRDTNNK--IQRYKGLGEMDAEQLWETTMDPE 589

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +R LLRV +++   +  +   +   LMG + + R +FI+  A  + ++ 
Sbjct: 590 RRVLLRVTLDE--ETTSEIDLTFTTLMGDQVEPRREFIEANAKRVQNLD 636


>gi|289523899|ref|ZP_06440753.1| DNA gyrase, B subunit [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289502555|gb|EFD23719.1| DNA gyrase, B subunit [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 645

 Score =  651 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/648 (40%), Positives = 377/648 (58%), Gaps = 24/648 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y A+ I+ILEGLE VR RP MYIG T  + LHHL  EV+DNA+DE +AGY + + V +
Sbjct: 17  KEYTANDIQILEGLEAVRRRPSMYIGDTGIRGLHHLVYEVVDNAIDEAMAGYCDQVSVIV 76

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G ++V DNGRGIPV+ HPK  NK   E++LT LHAGGKFDN  Y++SGGLHGVG+SV
Sbjct: 77  YPDGSVSVEDNGRGIPVDTHPKV-NKPAAEVVLTILHAGGKFDNKAYQVSGGLHGVGVSV 135

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  L + + R    + Q++SRG+P   L    K  ++ GT++ F PD  IF +K  
Sbjct: 136 VNALSTWLELIIWRDGMEWHQRYSRGVPQCELTPVGKA-DRTGTKVHFLPDDTIFEEK-D 193

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F    L    +  A+L   +K      +         +   F + GG+ ++++    +++
Sbjct: 194 FSFDVLSSRLREIAFLVPGLKIDLKDLR-------NNKSVAFKYDGGVISFVEYLNRDKN 246

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            +  E    K EK       VE A+ + +     + ++ N I T EGGTH  G R ALTR
Sbjct: 247 PLFKEPIYIKGEKDDVL---VEVALQYNDSFQERVFAFANLIHTVEGGTHVVGFRTALTR 303

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            + + A   +    +  ++  DDL      I+SV ++EP+F GQTKTKL + D +  V++
Sbjct: 304 AVNEMARRQKLLKDKDANLSGDDLKEGLTAIISVKLKEPQFEGQTKTKLGNSDVRGIVDS 363

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            + D    +L + P     ++E  I+  + R   +K RE V RK+A   L LPGKLADCS
Sbjct: 364 IVYDGLMAFLEEKPDCLRPIVEKAIKARQARDAAKKARELVRRKSAFGGLDLPGKLADCS 423

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                  EL+IVEGDSAGGSAKQ RNR+ QA+LPLRGKILNV  A  +K+ +N +I  ++
Sbjct: 424 SKDPEECELYIVEGDSAGGSAKQGRNRTFQAILPLRGKILNVEKARLDKVLSNAEIRTII 483

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
           QALGC     +    LRY +VIIMTDADVDGAHI +LLL FFY+ M  +IE  HL++  P
Sbjct: 484 QALGCGIGEDFDVNKLRYHRVIIMTDADVDGAHIRTLLLAFFYRFMPGIIEGGHLYIAQP 543

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+R+  G    Y + ++  + + ++       KI + R+KGLGEM   QL +T MD N+
Sbjct: 544 PLYRVQAGKSEYYCYSDKELRNMADKL---ANKKISVQRYKGLGEMNPEQLWKTTMDPNE 600

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           R L RV++   L       +    LMG K + R +FI+  A+ + ++ 
Sbjct: 601 RILKRVDVEDAL----AADEYFTILMGDKVEPRREFIESHANEVRNLD 644


>gi|289577274|ref|YP_003475901.1| DNA gyrase subunit beta [Thermoanaerobacter italicus Ab9]
 gi|289526987|gb|ADD01339.1| DNA gyrase, B subunit [Thermoanaerobacter italicus Ab9]
          Length = 633

 Score =  650 bits (1677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/651 (40%), Positives = 382/651 (58%), Gaps = 24/651 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  + Y AS I+ILEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AGY   I 
Sbjct: 2   AKDETYTASQIQILEGLEAVRKRPGMYIGSTGSRGLHHLVYEVVDNSIDEALAGYCKNIV 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +  +TV D+GRGIP + HPK   K  +E+ LT LHAGGKF+N  Y++SGGLHGVG
Sbjct: 62  VTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVALTMLHAGGKFNNDAYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS++L V V ++  IF Q + RG+P + LE   +      T ITF+PD +IF +
Sbjct: 121 VSVVNALSEKLEVVVKQRGKIFRQTYERGVPKTELEIIGETEETG-TTITFKPDKEIFEE 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L +  +  A+L+  +      +++  E       E F + GG+ ++++    
Sbjct: 180 TV-FNYDVLAQRLRELAFLNKGINIRLIDERDGKE-------EVFNYEGGIISFVKYLNR 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N+ ++  E    + +        VE  + + +     I S+ N I T EGGTH  G + A
Sbjct: 232 NKEVLHEEPIYMEAK---NTDYEVEVCMQYNDTYTENIFSFANNIDTREGGTHLVGFKSA 288

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LT+ I  YA           ++  +D+      I+SV ++ P+F GQTKTKL + + +  
Sbjct: 289 LTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFEGQTKTKLGNSEMRSI 348

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454
           VEN + +    +L +NP  A  ++E   + +  R   RK RE   RK+A+    LPGKLA
Sbjct: 349 VENVVIEKLSAFLEENPSVAKVIVEKATQAARAREAARKARELTRRKSALENTTLPGKLA 408

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS+      ELF+VEGDSAGGSAK  RN   QA+LPLRGKILNV  A  +KI +N++I 
Sbjct: 409 DCSEKDPSKCELFLVEGDSAGGSAKTGRNSRFQAILPLRGKILNVEKARLDKILSNEEIR 468

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++ ALG     ++    LRY KV+IMTDADVDG+HI +LLLTFFY+ M  LIE  ++++
Sbjct: 469 AMITALGTGIGDEFDISKLRYHKVVIMTDADVDGSHIRTLLLTFFYRFMRPLIENGNVYI 528

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL++IT+G K  YA+ ++   +IL E    G+    + R+KGLGEM A QL +T MD
Sbjct: 529 AQPPLYKITKGKKVYYAYSDKELDRILNEI---GRENYTVQRYKGLGEMNADQLWDTTMD 585

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             KRT+L+V +   +       +    LMG K + R +FI+  A  + ++ 
Sbjct: 586 PEKRTILKVTLEDAI----AADEIFTILMGDKVEPRREFIERYAKTVRNLD 632


>gi|20090442|ref|NP_616517.1| DNA topoisomerase (ATP-hydrolyzing), subunit B [Methanosarcina
           acetivorans C2A]
 gi|19915457|gb|AAM04997.1| DNA topoisomerase (ATP-hydrolyzing), subunit B [Methanosarcina
           acetivorans C2A]
          Length = 634

 Score =  650 bits (1677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/645 (39%), Positives = 370/645 (57%), Gaps = 21/645 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YDAS I++LEGLE VR RP MYIG TD + LHHL  EV+DN++DE +AG+   ++V+++ 
Sbjct: 7   YDASRIQVLEGLEAVRKRPSMYIGSTDSRGLHHLVYEVVDNSIDEALAGFCTRVDVTINP 66

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G +TV+DNGRGIP++ HP    KS LE+++T LHAGGKFD +TY++SGGLHGVG+SVVN
Sbjct: 67  DGSVTVLDNGRGIPIDPHP-VHKKSALEVVMTVLHAGGKFDKNTYKVSGGLHGVGVSVVN 125

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS+ L+V V R    + Q++ RG P + +++        GT+ TF+PD +IF     F 
Sbjct: 126 ALSEWLNVEVERDGKKYFQRYIRGKPEAEVQETG-TSEITGTKTTFKPDARIFETT-DFQ 183

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L    +  A+L+  +       +         + E F + GG+  +++   + +  +
Sbjct: 184 YDILSNRLRELAFLNRGLTINLKDLRSP-----EGQAETFIYSGGIVEFVEYLNKKKQPL 238

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
             +    + ++       VE A+ +       + S+ N I T EGGTH  G + ALTR  
Sbjct: 239 HEKPIYFERQRDD---MVVEIAMQYTNSYTENVYSFANNINTHEGGTHIIGFKTALTRVA 295

Query: 343 KKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
             Y +  +  K    +  DD+      I+SV + EP+F GQTKT+L + + +  V++ + 
Sbjct: 296 NDYIKANKLSKEDAKLTGDDVREGLTAIISVKLMEPQFEGQTKTRLGNSEVKGIVDSLVT 355

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNI 460
           D    Y  +NP  A  +LE  +   + R   +K RE   RK+A+    LPGKLADCS+  
Sbjct: 356 DGLAEYFEENPKVANVILEKALLAQKAREAAKKARELTRRKSALEVSTLPGKLADCSEKD 415

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
               E++IVEG+SAGGSAKQ R+R  QA+LPLRGKILNV  +   KI  N +++ L+ AL
Sbjct: 416 PSVCEIYIVEGNSAGGSAKQGRDRGFQAILPLRGKILNVEKSRLAKILKNNEVVSLITAL 475

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           G      +  E  RY KVI+MTDADVDGAHI +LLLT F++ M  LI+  ++++  PPL+
Sbjct: 476 GTGVSEDFALESARYHKVILMTDADVDGAHIRTLLLTLFFRYMRPLIDAGYVYIAQPPLY 535

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           RI +G    Y H +   +   +E  + G     I R+KGLGEM   QL ET M+   RTL
Sbjct: 536 RIKKGKSEYYIHSDRELEVKKKELGEKGLA---IQRYKGLGEMNPEQLWETTMNPESRTL 592

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           L+V +   L       +    LMG + + R  FI+  A  + D+ 
Sbjct: 593 LQVTLEDALR----ADEIFRVLMGDEVEPRRNFIETHAKEVVDLD 633


>gi|260887491|ref|ZP_05898754.1| DNA gyrase, B subunit [Selenomonas sputigena ATCC 35185]
 gi|330837873|ref|YP_004412453.1| DNA gyrase, B subunit [Selenomonas sputigena ATCC 35185]
 gi|260862778|gb|EEX77278.1| DNA gyrase, B subunit [Selenomonas sputigena ATCC 35185]
 gi|329745637|gb|AEB98993.1| DNA gyrase, B subunit [Selenomonas sputigena ATCC 35185]
          Length = 690

 Score =  650 bits (1677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/659 (38%), Positives = 375/659 (56%), Gaps = 24/659 (3%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
           D  +    +   +Y A+ I+ILEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +
Sbjct: 51  DMDSADVTAVDGDYGANQIQILEGLEAVRKRPGMYIGSTSERGLHHLVYEVVDNSIDEAL 110

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AGY + I+V+++ +  +TVVDNGRGIPV+ H     K  +E++LT LHAGGKF    Y++
Sbjct: 111 AGYCDHIDVTIEKDNSITVVDNGRGIPVDMHE--SGKPAVEVVLTVLHAGGKFGGEGYKV 168

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS  + V V R   I S +F +G+  +PL    +     GT++ F 
Sbjct: 169 SGGLHGVGVSVVNALSTSMDVEVKRDGKIHSIRFEQGVTAAPLTVIGETEK-TGTKVHFV 227

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PDP+IF     +    L    +  A+L+  +       +          +E +++ GG++
Sbjct: 228 PDPEIFTVT-QYSFDTLKHRLRELAFLNQGITIRLVDKRG------EGREESYFYEGGIR 280

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
           ++++     + +I          K  T    VE A+ + +     I S+ N I T+EGGT
Sbjct: 281 SFVEHLNRKKEVIHPTPIYFNGIKDDT---VVEIAMQYNDSYMENIYSFVNNINTEEGGT 337

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G ++ALTR    +A        +  ++  +D+      ++S+ I EP+F GQTKTKL
Sbjct: 338 HLAGFKIALTRAANDFARKQGILKDKDGNLSGEDVREGLTCVISLKIHEPQFEGQTKTKL 397

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
            + + +  V++ + +    Y  +NP    K++E  I  S  R   RK RE   RK A+  
Sbjct: 398 GNSEVRGIVDSIVTEGLTEYFEENPAITKKVIEKAIMASRAREAARKARELTRRKNALEV 457

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADCS       E+++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +K
Sbjct: 458 SSLPGKLADCSIKDPEQAEIYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDK 517

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           I  N +I  ++ A G      +     RY K+IIMTDADVDG+HI +LLLTFFY+ M  L
Sbjct: 518 IFANAEIRTMITAFGTGISDDFDIAKRRYGKIIIMTDADVDGSHIRTLLLTFFYRYMKPL 577

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           IE+ H+++  PPL++I +G K  Y + ++   + L E    G+    + R+KGLGEM   
Sbjct: 578 IERGHVYIAQPPLYQIRKGKKHWYTYSDDELAQKLNEV---GRDNATVQRYKGLGEMNPE 634

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           QL ET MD   RT+L+V +       ++  +    LMG K + R +FI+E A  + ++ 
Sbjct: 635 QLWETTMDPEGRTMLQVRMED----AEEADELFTILMGDKVEPRRQFIEEHAKHVRNLD 689


>gi|307265429|ref|ZP_07546985.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306919543|gb|EFN49761.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 633

 Score =  650 bits (1676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/651 (40%), Positives = 380/651 (58%), Gaps = 24/651 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  + Y AS I+ILEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AGY   I 
Sbjct: 2   AKDETYTASQIQILEGLEAVRKRPGMYIGSTGSRGLHHLVYEVVDNSIDEALAGYCKNIV 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +  +TV D+GRGIP + HPK   K  +E+ LT LHAGGKF+N  Y++SGGLHGVG
Sbjct: 62  VTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVALTMLHAGGKFNNDAYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS++L V V +   I+ Q + RG+P + LE   +      T ITF+PD +IF +
Sbjct: 121 VSVVNALSEKLEVIVKQHGKIYRQIYERGVPKTDLEVIGETEETG-TTITFKPDKEIFEE 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              FD   L +  +  A+L+  +      ++   E       E F + GG+ ++++    
Sbjct: 180 TV-FDYDVLAQRLRELAFLNKGINIKLIDERHGKE-------EVFNYEGGIISFVKYLNR 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N+ ++  E    + +        VE  + + +     I S+ N I T EGGTH  G + A
Sbjct: 232 NKEVLHEEPIYMEAK---NSDYEVEVCMQYNDSYTENIFSFANNIDTREGGTHLVGFKAA 288

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LT+ I  YA           ++  +D+      I+SV ++ P+F GQTKTKL + + +  
Sbjct: 289 LTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFEGQTKTKLGNSEMRSI 348

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454
           VEN + +    +L +NP  A  ++E   + +  R   RK RE   RK+A+    LPGKLA
Sbjct: 349 VENVVTEKLSAFLEENPSVAKVIVEKATQAARAREAARKARELTRRKSALENTTLPGKLA 408

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS+      ELF+VEGDSAGGSAK  RN   QA+LPLRGKILNV  A  +KI +N++I 
Sbjct: 409 DCSEKDPSKCELFLVEGDSAGGSAKSGRNSRFQAILPLRGKILNVEKARLDKILSNEEIR 468

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++ ALG    + +    LRY K++IMTDADVDG+HI +LLLTFFY+ M  LIE  ++++
Sbjct: 469 AMITALGTGVGNDFDISKLRYHKIVIMTDADVDGSHIRTLLLTFFYRFMRPLIENGNVYI 528

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL++IT+G K  YA+ +    KIL E    G+    + R+KGLGEM A QL +T MD
Sbjct: 529 AQPPLYKITKGKKVYYAYSDRELDKILNEI---GRENYTVQRYKGLGEMNADQLWDTTMD 585

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             KRT+L+V +   +       +    LMG K + R +FI++ A  + ++ 
Sbjct: 586 PEKRTMLKVTLEDAI----AADEIFTILMGDKVEPRREFIEKYAKTVRNLD 632


>gi|297616219|ref|YP_003701378.1| DNA gyrase subunit beta [Syntrophothermus lipocalidus DSM 12680]
 gi|297144056|gb|ADI00813.1| DNA gyrase, B subunit [Syntrophothermus lipocalidus DSM 12680]
          Length = 636

 Score =  650 bits (1676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/655 (40%), Positives = 384/655 (58%), Gaps = 24/655 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
                + + Y A  I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AGY 
Sbjct: 1   MNINGSKNEYTALDIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVFEIVDNSIDEAVAGYC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I+V +  +  +TV DNGRGIPV+ HPK      LE+ILTTLH+G KF  S Y ISGGL
Sbjct: 61  DEIKVIILDDSTVTVTDNGRGIPVDMHPKM-GIPALEVILTTLHSGAKFGGSGYTISGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS  L V VAR   ++ Q++ RG P++PL      +   GT+ITF PDP+
Sbjct: 120 HGVGLSVVNALSRWLEVEVARDGQLYHQRYERGKPVTPLAVTGACQ-TTGTKITFSPDPE 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   F A  + +  +  +YL+   +      +            E+Y  GG++ +++
Sbjct: 179 IFEEIC-FSAEIIGQRLRELSYLNQGTRIVLCDKR-------TGRDVEYYHTGGIRDFVK 230

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESG 333
              +NR  +S E    +  K+GT    VE AI +     E   SY N I T EGGTHE G
Sbjct: 231 YLSKNREPLSPEPIYFRIGKEGT---VVEVAIQYNTGYTETLLSYANNIHTQEGGTHELG 287

Query: 334 LRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            +  LTR + +YA+     +    +++ +D+      ++SV +++P+F GQTKTKL +  
Sbjct: 288 FKNGLTRVVNEYAKKQGMLKENEGNLLGEDIREGMTAVISVLVQDPQFEGQTKTKLGNAF 347

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLP 450
            +  VE A+ D    +  +NP  A K++E  I     R   RK RE+ R+  +     LP
Sbjct: 348 IRSLVEGAVSDFVGAFFDENPSLAKKIVEKAIAARRAREAARKARELTRRKNLLDSTSLP 407

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS+     +EL++VEGDSAGGSAKQ R+R+ QA+LPLRGKILNV  A  +K+ +N
Sbjct: 408 GKLADCSEKDPALSELYLVEGDSAGGSAKQGRDRNFQAILPLRGKILNVEKARLDKVLSN 467

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  L+ A+G      +     RY ++IIMTDADVDG+HI  LLLTFFY+ M  LIE  
Sbjct: 468 EEIRALITAIGTGIGEDFDINKARYHRLIIMTDADVDGSHIRVLLLTFFYRYMRPLIEAG 527

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPL+ + +G +  Y +++   Q+ LE+    G  K  + R+KGLGEM   QL E
Sbjct: 528 YVYVAQPPLYELKRGKEVHYIYNDRELQRFLEQ---QGNKKYGVKRYKGLGEMNPEQLWE 584

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T M+   RTLL+V I   +          + LMG K + R +FIQE A  + ++ 
Sbjct: 585 TTMNPENRTLLQVRIEDAI----AADVIFSSLMGEKVEPRREFIQENARLVTNLD 635


>gi|163760282|ref|ZP_02167365.1| DNA topoisomerase IV subunit B [Hoeflea phototrophica DFL-43]
 gi|162282681|gb|EDQ32969.1| DNA topoisomerase IV subunit B [Hoeflea phototrophica DFL-43]
          Length = 697

 Score =  650 bits (1676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 443/699 (63%), Positives = 544/699 (77%), Gaps = 20/699 (2%)

Query: 3   DDSIDLFSTL-------------PPQSQGSSEKLKKSGEIPDSPAFANQSAS---DNYDA 46
           DDS DLFS++             P  +   S++ +     P +P  A + A    D YDA
Sbjct: 2   DDSNDLFSSMGTQAASAEPKTEIPAAAAPQSKQPEAKAAKPQAPKPAAKGAPASGDAYDA 61

Query: 47  SSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGF 106
           S+I +LEGLEPVR RPGMYIGGTDE+ALHHLF+EVIDN+MDE +AG+AN IEV LD  G+
Sbjct: 62  SAIEVLEGLEPVRRRPGMYIGGTDERALHHLFAEVIDNSMDEAVAGHANFIEVELDAEGY 121

Query: 107 LTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALS 166
           LTV DNGRGIPVENHPKFP KSTLE+I+T LHAGGKFD+  YE SGGLHGVG+SVVNALS
Sbjct: 122 LTVSDNGRGIPVENHPKFPGKSTLEVIMTVLHAGGKFDSKVYETSGGLHGVGVSVVNALS 181

Query: 167 DELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAAR 226
           D+L V +AR   ++ Q+FSRGIP   LE+  +V N+RGT+I F PD  IFG  A FD  R
Sbjct: 182 DDLLVEIARNRCLYRQRFSRGIPQGGLEEAGEVHNRRGTKIRFHPDADIFGAAARFDPGR 241

Query: 227 LLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSE 286
           L +M +SKAYL G V+  WSCD  + E    P+K  F+FPGGLK YL+  L     ++ E
Sbjct: 242 LYRMARSKAYLFGGVEIRWSCDPSLVEGTETPDKAVFHFPGGLKDYLEASLGKEHRVTRE 301

Query: 287 IFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYA 346
           IF GKTE+ G H G++EWA+ W   +  I+SYCNTI T EGGTHE+GLR+ALT+G+K YA
Sbjct: 302 IFAGKTERPGGH-GSMEWAVTWYGGDAAISSYCNTIPTPEGGTHEAGLRIALTKGLKAYA 360

Query: 347 ELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
           ELT NKRA +I +DD+MIS++G+LSVFIREPEF GQTK KL +++AQR VENALRDPFDH
Sbjct: 361 ELTGNKRASAITTDDVMISSIGMLSVFIREPEFVGQTKDKLATVEAQRIVENALRDPFDH 420

Query: 407 YLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
           +L  +P EA KLLEWVI+R+EER+RRRK++EVNRKTA+RKLRLPGKLADCSQ  + G EL
Sbjct: 421 FLADSPAEADKLLEWVIDRAEERVRRRKEKEVNRKTAVRKLRLPGKLADCSQTTSEGAEL 480

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS 526
           FIVEGDSAGGSAKQARNRSNQA+LPLRGKILNVASAG EK+  NQQI DLVQALGC TRS
Sbjct: 481 FIVEGDSAGGSAKQARNRSNQAILPLRGKILNVASAGREKLGANQQIGDLVQALGCGTRS 540

Query: 527 QYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT 586
           +YREEDLRY+++IIMTDADVDGAHIASLL+TFFYQEM +LI Q HL+L  PPL++I+QG 
Sbjct: 541 KYREEDLRYDRIIIMTDADVDGAHIASLLITFFYQEMPELIRQGHLYLAVPPLYKISQGG 600

Query: 587 KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646
           KS+YA D+ H+ ++LE  +  G+GK+EI+RFKGLGEML +QLKET MD  KRTLL+V + 
Sbjct: 601 KSLYARDDAHRVELLET-EFTGRGKVEINRFKGLGEMLPAQLKETTMDPAKRTLLKVAV- 658

Query: 647 KDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            D+   + T+++++ LMGTKAD RF+FIQE A+F D++ 
Sbjct: 659 -DITDPESTREAVDNLMGTKADARFRFIQEHAAFADNLD 696


>gi|15612569|ref|NP_240872.1| DNA gyrase subunit B [Bacillus halodurans C-125]
 gi|4033396|sp|O50627|GYRB_BACHD RecName: Full=DNA gyrase subunit B
 gi|2760177|dbj|BAA24187.1| B subunit of DNA gyrase [Bacillus sp.]
 gi|5672652|dbj|BAA82690.1| 78%-identity [Bacillus halodurans]
 gi|10172618|dbj|BAB03725.1| DNA gyrase subunit B [Bacillus halodurans C-125]
          Length = 637

 Score =  650 bits (1676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/648 (41%), Positives = 384/648 (59%), Gaps = 21/648 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             YD S I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AG+ + I V +
Sbjct: 6   QAYDESQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVWEIVDNSIDEAMAGFCDEIGVVI 65

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +  +TV DNGRGIPV  H K   +  +E+I+T LHAGGKF    Y++SGGLHGVG SV
Sbjct: 66  EEDNSITVTDNGRGIPVGIHEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASV 124

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  L V V R+  +  QKF RG+P + LE      ++ GT+I F+PD  IF +   
Sbjct: 125 VNALSTMLEVEVHREGKVHYQKFHRGVPAADLEVIG-TTDRTGTKIHFKPDGDIFTETTV 183

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F+   L    +  A+L+  ++   +  +E        + +EF++ GG+ ++++     R 
Sbjct: 184 FEYDTLASRLRELAFLNKGLRIKITDMRE------EEKSDEFHYEGGIASFVEHLNRTRE 237

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            +       + EK+G +   VE A+ + +     I S+ N I T EGGTHESG +  LTR
Sbjct: 238 TLHETPIHIEGEKQGVY---VEIAVQYNDGFTSNIYSFANNINTHEGGTHESGFKTGLTR 294

Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  YA      +    ++  +D+      I+SV I +P+F GQTKTKL + +A+   ++
Sbjct: 295 VINDYARKHNLFKESDPNLTGEDVREGLTAIISVKIPDPQFEGQTKTKLGNSEARTITDS 354

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
              + F  +L+++P  A KL++  +  S  R   +K RE   RK+A+    LPGKLADCS
Sbjct: 355 LFTEHFSRFLIEHPQVARKLVDKGLMASRAREAAKKARELTRRKSALEVSSLPGKLADCS 414

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
              A  +E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI  N +I  ++
Sbjct: 415 SRDASISEIYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILANNEIRAII 474

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG      +  E  RY K+IIMTDADVDGAHI +L+LTFFY+ M  LIE  ++++  P
Sbjct: 475 TALGTGIGDDFDIEKARYHKIIIMTDADVDGAHIRTLILTFFYRYMRPLIEHGYVYIAQP 534

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+++ QG    YA+ +   Q+IL +     K K  I R+KGLGEM  SQL ET MD  +
Sbjct: 535 PLYKVQQGKDIQYAYGDAELQEILSQLP--DKAKPGIQRYKGLGEMNPSQLWETTMDPGQ 592

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           RT+L+V +   +       +    LMG + + R  FIQE A ++ ++ 
Sbjct: 593 RTVLQVTLEDAMK----ADEIFEILMGDRVEPRRDFIQENARYVKNLD 636


>gi|297543507|ref|YP_003675809.1| DNA gyrase, B subunit [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296841282|gb|ADH59798.1| DNA gyrase, B subunit [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 633

 Score =  650 bits (1676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/651 (40%), Positives = 382/651 (58%), Gaps = 24/651 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  + Y AS I+ILEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AGY   I 
Sbjct: 2   AKDETYTASQIQILEGLEAVRKRPGMYIGSTGSRGLHHLVYEVVDNSIDEALAGYCKNIV 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +  +TV D+GRGIP + HPK   K  +E+ LT LHAGGKF+N  Y++SGGLHGVG
Sbjct: 62  VTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVALTMLHAGGKFNNDAYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS++L V V ++  IF Q + RG+P + LE   +      T ITF+PD +IF +
Sbjct: 121 VSVVNALSEKLEVVVKQRGKIFRQTYERGVPKTDLEIIGETEETG-TTITFKPDKEIFEE 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L +  +  A+L+  +      +++  E       E F + GG+ ++++    
Sbjct: 180 TV-FNYDVLAQRLRELAFLNKGINIKLIDERDGKE-------EVFNYEGGIISFVKYLNR 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N+ ++  E    + +        VE  + + +     I S+ N I T EGGTH  G + A
Sbjct: 232 NKEVLHEEPIYMEAK---NTDYEVEVCMQYNDTYTENIFSFANNIDTREGGTHLVGFKSA 288

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LT+ I  YA           ++  +D+      I+SV ++ P+F GQTKTKL + + +  
Sbjct: 289 LTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFEGQTKTKLGNSEMRSI 348

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454
           VEN + +    +L +NP  A  ++E   + +  R   RK RE   RK+A+    LPGKLA
Sbjct: 349 VENVVIEKLSAFLEENPSVAKVIVEKATQAARAREAARKARELTRRKSALENTTLPGKLA 408

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS+      ELF+VEGDSAGGSAK  RN   QA+LPLRGKILNV  A  +KI +N++I 
Sbjct: 409 DCSEKDPSKCELFLVEGDSAGGSAKTGRNSRFQAILPLRGKILNVEKARLDKILSNEEIR 468

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++ ALG     ++    LRY KV+IMTDADVDG+HI +LLLTFFY+ M  LIE  ++++
Sbjct: 469 AMITALGTGIGDEFDISKLRYHKVVIMTDADVDGSHIRTLLLTFFYRFMRPLIENGNVYI 528

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL++IT+G K  YA+ ++   +IL E    G+    + R+KGLGEM A QL +T MD
Sbjct: 529 AQPPLYKITKGKKVYYAYSDKELDRILNEI---GRENYTVQRYKGLGEMNADQLWDTTMD 585

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             KRT+L+V +   +       +    LMG K + R +FI+  A  + ++ 
Sbjct: 586 PEKRTILKVTLEDAI----AADEIFTILMGDKVEPRREFIERYAKTVRNLD 632


>gi|167036441|ref|YP_001664019.1| DNA gyrase subunit B [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|256751447|ref|ZP_05492325.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|320114866|ref|YP_004185025.1| DNA topoisomerase IV subunit B [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166855275|gb|ABY93683.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256749666|gb|EEU62692.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|319927957|gb|ADV78642.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 633

 Score =  649 bits (1675), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/651 (40%), Positives = 381/651 (58%), Gaps = 24/651 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  + Y AS I+ILEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AGY   I 
Sbjct: 2   AKDETYTASQIQILEGLEAVRKRPGMYIGSTGSRGLHHLVYEVVDNSIDEALAGYCKNIV 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +  +TV D+GRGIP + HPK      +E+ LT LHAGGKF+N  Y++SGGLHGVG
Sbjct: 62  VTIHKDNSITVEDDGRGIPTDIHPKVRK-PAVEVALTMLHAGGKFNNDAYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS++L V V +   I+ Q++ RG+P + LE   +      T ITF+PD +IF +
Sbjct: 121 VSVVNALSEKLEVIVKQHGKIYRQRYERGVPKTDLEVIGETEETG-TTITFKPDKEIFEE 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              FD   L +  +  A+L+  +      +++  E       E F + GG+ ++++    
Sbjct: 180 TV-FDYDVLAQRLRELAFLNKGINIKLIDERDGKE-------EVFNYEGGIISFVKYLNR 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N+ ++  E    + +        VE  + + +     I S+ N I T EGGTH  G + A
Sbjct: 232 NKEVLHEEPIYMEAK---NSDYEVEVCMQYNDSYTENIFSFANNIDTREGGTHLVGFKAA 288

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LT+ I  YA           ++  +D+      I+SV ++ P+F GQTKTKL + + +  
Sbjct: 289 LTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFEGQTKTKLGNSEMRSI 348

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454
           VEN + +    +L +NP  A  ++E   + +  R   RK RE   RK+A+    LPGKLA
Sbjct: 349 VENVVTEKLSAFLEENPSVAKVIVEKATQAARAREAARKARELTRRKSALENTTLPGKLA 408

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS+      ELF+VEGDSAGGSAK  RN   QA+LPLRGKILNV  A  +KI +N++I 
Sbjct: 409 DCSEKDPSKCELFLVEGDSAGGSAKSGRNSRFQAILPLRGKILNVEKARLDKILSNEEIR 468

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++ ALG     ++    LRY KV+IMTDADVDG+HI +LLLTFFY+ M  LIE  ++++
Sbjct: 469 AMITALGTGIGDEFDISKLRYHKVVIMTDADVDGSHIRTLLLTFFYRFMRPLIENGNVYI 528

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL++IT+G K  YA+ +    +IL E    G+    + R+KGLGEM A QL +T MD
Sbjct: 529 AQPPLYKITKGKKVYYAYSDRELDRILNEI---GRENYTVQRYKGLGEMNADQLWDTTMD 585

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             KRT+L+V +   +       +    LMG K + R +FI++ A  + ++ 
Sbjct: 586 PEKRTMLKVTLEDAI----AADEIFTILMGDKVEPRREFIEKHAKTVRNLD 632


>gi|282163382|ref|YP_003355767.1| DNA gyrase subunit B [Methanocella paludicola SANAE]
 gi|282155696|dbj|BAI60784.1| DNA gyrase subunit B [Methanocella paludicola SANAE]
          Length = 635

 Score =  649 bits (1675), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/654 (41%), Positives = 391/654 (59%), Gaps = 23/654 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            +N+  +  YDASSI++LEGLE VR RP MYIG TD + LHHL  EV+DN++DE +AGY 
Sbjct: 1   MSNEIPAQAYDASSIQVLEGLEAVRKRPSMYIGSTDYRGLHHLVYEVVDNSIDEALAGYC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + IEV+++ +G +TV D+GRGIPVE H K+  +  LEI++T LHAGGKFDN TY++SGGL
Sbjct: 61  HNIEVTINKDGSVTVSDDGRGIPVEMHEKY-KRPALEIVMTMLHAGGKFDNLTYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS+ L V V R   ++ Q++ RG P   + +         T   F+PDP 
Sbjct: 120 HGVGVSVVNALSEWLRVEVRRNEKLWVQEYVRGKPKDEVHEIGTAIGTG-TTTIFKPDPT 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     F    L+   +  A+L+  VK      +           + F++ GG+  ++Q
Sbjct: 179 IFETT-EFKYEILVNRLRELAFLNKGVKITLMDARSGV-------SDTFHYEGGIVQFVQ 230

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESG 333
              E ++ ++ ++   + +K  T    VE A+ + +   EI  ++ N I T EGGTH SG
Sbjct: 231 YLNEGKTPVNEKVIYFEKQKDTT---DVEIAMQYNDGYSEIVLAFANNIHTTEGGTHLSG 287

Query: 334 LRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
            R ALTR    YA+     +  +    +D+      I+SV +  P+F GQTKTKL + D 
Sbjct: 288 FRSALTRSFNDYAKKNSLLKGDMQFSGEDIREGLTAIISVKLTNPQFEGQTKTKLGNSDV 347

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
           Q  V + + +  D +L +NP EA K+++  ++  + R   RK RE   RK+ +    LPG
Sbjct: 348 QGIVNSLVGEGLDDFLEENPSEARKIIDKAVQAFQAREAARKARELTRRKSVLENTTLPG 407

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS+      EL++VEGDSAGGSAKQ RNR  QA+LPLRGKILNV  A  +++  ++
Sbjct: 408 KLADCSERDPSKCELYLVEGDSAGGSAKQGRNRLFQAILPLRGKILNVEKARLDRVLTSE 467

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  L+ A+G      +  +  RY K+I+MTDADVDGAHI +LLLTFF++ M  LIE  +
Sbjct: 468 EIRALITAMGTSVGEDFVIDKARYHKIILMTDADVDGAHIRTLLLTFFFRYMKPLIEAGY 527

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPLFR  +G +  YA++EE    ILEE  ++G   + ++R+KGLGEM   QL  T
Sbjct: 528 VYIAQPPLFRAKKGKEERYAYNEEALAGILEEMGRNG---VAVNRYKGLGEMNPEQLWST 584

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   RT+L+V +   +    +   +   LMG K + R  FI + A F+ ++ 
Sbjct: 585 TMDPQTRTVLQVTMEDAV----EADRTFTLLMGDKVEPRRDFIVQNAKFVRNLD 634


>gi|326390355|ref|ZP_08211914.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter ethanolicus JW
           200]
 gi|325993632|gb|EGD52065.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter ethanolicus JW
           200]
          Length = 633

 Score =  649 bits (1674), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/651 (40%), Positives = 380/651 (58%), Gaps = 24/651 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  + Y AS I+ILEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AGY   I 
Sbjct: 2   AKDETYTASQIQILEGLEAVRKRPGMYIGSTGSRGLHHLVYEVVDNSIDEALAGYCKNIV 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +  +TV D+GRGIP + HPK   K  +E+ LT LHAGGKF+N  Y++SGGLHGVG
Sbjct: 62  VTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVALTMLHAGGKFNNDAYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS++L V V +   I+ Q + RG+P + LE   +      T ITF+PD +IF +
Sbjct: 121 VSVVNALSEKLEVIVKQHGKIYRQIYERGVPKTDLEVIGETEETG-TTITFKPDKEIFEE 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              FD   L +  +  A+L+  +      ++   E       E F + GG+ ++++    
Sbjct: 180 TV-FDYDVLAQRLRELAFLNKGINIKLIDERHGKE-------EVFNYEGGIISFVKYLNR 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N+ ++  E    + +        VE  + + +     I S+ N I T EGGTH  G + A
Sbjct: 232 NKEVLHEEPIYMEAK---NSDYEVEVCMQYNDSYNENIFSFANNIDTREGGTHLVGFKAA 288

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LT+ I  YA           ++  +D+      I+SV ++ P+F GQTKTKL + + +  
Sbjct: 289 LTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFEGQTKTKLGNSEMRSI 348

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454
           VEN + +    +L +NP  A  ++E   + +  R   RK RE   RK+A+    LPGKLA
Sbjct: 349 VENVVTEKLSAFLEENPSVAKVIVEKATQAARAREAARKARELTRRKSALENTTLPGKLA 408

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS+      ELF+VEGDSAGGSAK  RN   QA+LPLRGKILNV  A  +KI +N++I 
Sbjct: 409 DCSEKDPSKCELFLVEGDSAGGSAKSGRNSRFQAILPLRGKILNVEKARLDKILSNEEIR 468

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++ ALG    + +    LRY K++IMTDADVDG+HI +LLLTFFY+ M  LIE  ++F+
Sbjct: 469 AMITALGTGVGNDFDISKLRYHKIVIMTDADVDGSHIRTLLLTFFYRFMRPLIENGNVFI 528

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL++IT+G K  YA+ +    KIL E    G+    + R+KGLGEM A QL +T MD
Sbjct: 529 AQPPLYKITKGKKVYYAYSDRELDKILNEI---GRENYTVQRYKGLGEMNADQLWDTTMD 585

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             KRT+L+V +   +       +    LMG K + R +FI++ A  + ++ 
Sbjct: 586 PEKRTMLKVTLEDAI----AADEIFTILMGDKVEPRREFIEKYAKTVRNLD 632


>gi|153010978|ref|YP_001372192.1| DNA topoisomerase IV subunit B [Ochrobactrum anthropi ATCC 49188]
 gi|151562866|gb|ABS16363.1| DNA topoisomerase IV, B subunit [Ochrobactrum anthropi ATCC 49188]
          Length = 704

 Score =  649 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 433/706 (61%), Positives = 534/706 (75%), Gaps = 27/706 (3%)

Query: 3   DDSIDLFS----------------------TLPPQSQGSSEKLKKSGEIPDSPAFANQSA 40
           DDS DLFS                      +  P +Q  +       +   + A    SA
Sbjct: 2   DDSNDLFSRVVNNARAREREQEQGRQGEKPSEKPVAQPMAAPSLSVPKPVTAKAPPASSA 61

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           SD+Y+ASSIR+LEGLEPVR+RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+AN IEVS
Sbjct: 62  SDDYNASSIRVLEGLEPVRLRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHANFIEVS 121

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
            D +GF+TV DNGRGIPV+ HP+ P KSTLE+I+T LHAGGKFD   YE SGGLHGVG+S
Sbjct: 122 FDADGFVTVSDNGRGIPVDEHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVS 181

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALSD L V VAR   ++ Q+FSRGIP   LE+  +V N+RGTR+ F PDP IFG  A
Sbjct: 182 VVNALSDMLEVEVARNRRLYRQRFSRGIPQGGLEELGEVHNRRGTRVRFHPDPDIFGKTA 241

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLEN 279
            FD  RL +M +SKAYL G V+  W+CD  + + K   PEK  F+FPGGLK YL+  L  
Sbjct: 242 QFDPHRLYRMARSKAYLFGGVEIRWNCDPSLLDPKKETPEKAVFHFPGGLKDYLEASLGK 301

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
              ++ EIF GKTEK+G H G VEWA++W   +  + SYCNTI T +GGTHE+GLR+ALT
Sbjct: 302 EHQVTREIFAGKTEKQGGH-GAVEWAVSWFGGDGFVHSYCNTIPTGDGGTHEAGLRIALT 360

Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           RG+K YAELT NKRA  I +DD+M+SA G+LSVFIREPEF GQTK KL +++AQR VENA
Sbjct: 361 RGLKAYAELTNNKRASIITTDDVMVSAAGMLSVFIREPEFVGQTKDKLATVEAQRIVENA 420

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
           +RDPFDH+L  +P EA++LLEWVI+R++ERLRRR+++E  RK+A RKLRLPGKLADC+QN
Sbjct: 421 IRDPFDHWLTASPQEASRLLEWVIDRADERLRRRQEKETVRKSATRKLRLPGKLADCTQN 480

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
            A G ELFIVEGDSAGGSAKQARNR+NQA+LPLRGKILNVASAG EK+  NQQI DLVQA
Sbjct: 481 AAAGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLTANQQISDLVQA 540

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           LG  TR  YRE+DLRY++VI+MTDADVDGAHIASLL+TFFYQEM DLI   HL+L  PPL
Sbjct: 541 LGSGTRKNYREDDLRYDRVIVMTDADVDGAHIASLLITFFYQEMPDLIRNGHLYLAVPPL 600

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           FR++QG K  YA DE HK ++L      G+GK+EI RFKGLGEM A QLKET MD  KRT
Sbjct: 601 FRLSQGGKVAYARDEAHKDELLRTVF-TGRGKVEIGRFKGLGEMRAEQLKETTMDPKKRT 659

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           LLRV+++++     +T++++++LMGTK + RF+FIQ+RA+F++++ 
Sbjct: 660 LLRVQVDEEYID--ETRNTVDELMGTKPEARFRFIQDRAAFVEELD 703


>gi|294102629|ref|YP_003554487.1| DNA gyrase, B subunit [Aminobacterium colombiense DSM 12261]
 gi|293617609|gb|ADE57763.1| DNA gyrase, B subunit [Aminobacterium colombiense DSM 12261]
          Length = 634

 Score =  649 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/651 (39%), Positives = 380/651 (58%), Gaps = 22/651 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            +++  Y A  I++LEGL+ VR RPGMYIG T  + LHHL  EV+DN++DE IAGY + I
Sbjct: 2   TTSAKQYTAKDIQVLEGLQAVRKRPGMYIGDTGPRGLHHLVYEVVDNSIDEAIAGYCDKI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V +  +  ++V DNGRGIP E HP    +   E++LT LHAGGKFDN  Y++SGGLHGV
Sbjct: 62  SVVIYEDESVSVADNGRGIPTEPHP-SSGRPASEVVLTILHAGGKFDNQAYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+ L +T+ R     +Q+F RG+P++ L +  +   K GT + F PD  IF 
Sbjct: 121 GVSVVNALSEWLEITIQRNGLSRTQRFERGVPVTDLSE-GEPSTKTGTYVRFHPDTTIFE 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F A  L    +  A+L+  +       +         +  EF++ GG+KT+++   
Sbjct: 180 EVR-FSADILSGRLREMAFLNPGLAITLEDHRS-------GKCVEFHYEGGIKTFIEYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           + ++ +  E      EK G    +VE  I + +     I ++ N I T EGGTH +G R 
Sbjct: 232 KGKTPLFPEPIVIAGEKDG---ASVEIGIQYNDGYLERIFAFANMIHTIEGGTHVAGFRT 288

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR + + A   +   ++  ++  +DL      +LS+ +  P+F GQTKTKL + + + 
Sbjct: 289 ALTRAVNEVARRAKILREKDENLSGEDLKEGLTCVLSIKLSNPQFEGQTKTKLGNSEIKG 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454
             ++ + +    YL ++      ++E  I   + R   +K RE+ RKTA+  + LPGKLA
Sbjct: 349 ITDSVVYEGLLAYLDEHQEVLKPVVEKAIRARQARDAAKKARELVRKTAMTGMNLPGKLA 408

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS    H  E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +K+ +N +I 
Sbjct: 409 DCSSRDPHVCEVYIVEGDSAGGSAKQGRDRGFQAILPLRGKILNVEKARFDKVLSNNEIR 468

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++QALGC     +    LRY K+IIMTDADVDGAHI++LLLTFFY+ M DLI++ HL+L
Sbjct: 469 TIIQALGCGIGEDFDHSKLRYNKIIIMTDADVDGAHISTLLLTFFYRYMQDLIDKGHLYL 528

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL+R+ +G    Y + E+  + I++      +    + R+KGLGEM   QL ET MD
Sbjct: 529 AQPPLYRVQRGKNVTYCYSEKELRDIVDSTPDSRRA--SVQRYKGLGEMNPDQLWETTMD 586

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              R L R+E+   +       +  + LMG K + R  FI   A  + ++ 
Sbjct: 587 PQNRVLKRIEVEDAM----LADEYFSILMGDKVEPRRDFIAAHAHEVRNLD 633


>gi|315122338|ref|YP_004062827.1| DNA topoisomerase IV subunit B [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495740|gb|ADR52339.1| DNA topoisomerase IV subunit B [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 681

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 572/680 (84%), Positives = 632/680 (92%)

Query: 3   DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRP 62
           DDSIDLFSTLPPQ++ SS+K + S ++  +    N + SDNYDASSIRILEGLEPVRMRP
Sbjct: 2   DDSIDLFSTLPPQNKESSKKFEDSDKLDSTNIHKNHTVSDNYDASSIRILEGLEPVRMRP 61

Query: 63  GMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122
           GMYIGGTDEKALHHLFSEVIDNAMDEVIAG+A+LIEVSLD NGFLTVVDNGRGIPV+NHP
Sbjct: 62  GMYIGGTDEKALHHLFSEVIDNAMDEVIAGHADLIEVSLDNNGFLTVVDNGRGIPVDNHP 121

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
           KFP+KSTLEII+T LHAGGKFD+STYEISGGLHGVGISVVNALSDEL VTV RQNT+FSQ
Sbjct: 122 KFPDKSTLEIIMTKLHAGGKFDSSTYEISGGLHGVGISVVNALSDELEVTVMRQNTVFSQ 181

Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
           +FSRGIPL PLEK  KVRNKRGT I FRPDPKIFG+ A F+A+RL+K+T+SKAYLSGRVK
Sbjct: 182 RFSRGIPLGPLEKIGKVRNKRGTSIKFRPDPKIFGENASFNASRLVKITKSKAYLSGRVK 241

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
           T WSCDK+IAEKY IPEK EFYFPGGLKTYLQT+L+NRSLISSEIFTGKTE+KG++ G++
Sbjct: 242 TYWSCDKQIAEKYNIPEKTEFYFPGGLKTYLQTRLKNRSLISSEIFTGKTERKGSNPGSI 301

Query: 303 EWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDL 362
           EWAIAWCEE+PEITSYCNTILTDEGG+HESGLRVALTRGI+KYAELTQNKRA  I SDD+
Sbjct: 302 EWAIAWCEEDPEITSYCNTILTDEGGSHESGLRVALTRGIRKYAELTQNKRAALITSDDI 361

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
           MISAVGILSVFI EPEFAGQTKTKLVS DAQR VENALRDPFDHYLV+NP+E TKLLEWV
Sbjct: 362 MISAVGILSVFIPEPEFAGQTKTKLVSFDAQRIVENALRDPFDHYLVKNPVETTKLLEWV 421

Query: 423 IERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           IERSEERLRRRKQ+EVNRKTA+RKLRLPGKLADCSQN+A GTELFIVEGDSAGGSAKQAR
Sbjct: 422 IERSEERLRRRKQKEVNRKTAMRKLRLPGKLADCSQNMAKGTELFIVEGDSAGGSAKQAR 481

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           NR+NQA+LPLRGKILNVASAG EKIR +QQI DL+QALGCRTRSQYREEDLRYEKVIIMT
Sbjct: 482 NRNNQAILPLRGKILNVASAGLEKIRTSQQISDLIQALGCRTRSQYREEDLRYEKVIIMT 541

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILE 602
           DADVDGAHIASLLLTFFYQEMY LIEQKHLFL+SPPLFRITQG++S+YA DEEHKQ+IL+
Sbjct: 542 DADVDGAHIASLLLTFFYQEMYGLIEQKHLFLVSPPLFRITQGSRSIYARDEEHKQEILK 601

Query: 603 EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKL 662
           +F++ G+GKIEI+RFKGLGEMLASQLKETAMDA KRTLLRVE+  D  S + T+DSI+KL
Sbjct: 602 DFREKGRGKIEINRFKGLGEMLASQLKETAMDATKRTLLRVELCSDQESFEKTKDSIHKL 661

Query: 663 MGTKADERFKFIQERASFID 682
           MGTKADERFKFIQERA+F+D
Sbjct: 662 MGTKADERFKFIQERATFVD 681


>gi|295402119|ref|ZP_06812078.1| DNA gyrase, B subunit [Geobacillus thermoglucosidasius C56-YS93]
 gi|312109156|ref|YP_003987472.1| DNA gyrase subunit beta [Geobacillus sp. Y4.1MC1]
 gi|294975802|gb|EFG51421.1| DNA gyrase, B subunit [Geobacillus thermoglucosidasius C56-YS93]
 gi|311214257|gb|ADP72861.1| DNA gyrase, B subunit [Geobacillus sp. Y4.1MC1]
          Length = 640

 Score =  648 bits (1671), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/653 (40%), Positives = 386/653 (59%), Gaps = 21/653 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            Q     YDAS I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY   
Sbjct: 4   EQKVEHTYDASQIQVLEGLEAVRKRPGMYIGSTGPKGLHHLVWEIVDNSIDEALAGYCTE 63

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V+++ +G +TV DNGRGIPV+   K   +  +E+I+T LHAGGKF    Y++SGGLHG
Sbjct: 64  INVTIEKDGSITVTDNGRGIPVDIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS+EL V V R   I  QK+ RG+P + L+   +  ++ GT + F+PDP+IF
Sbjct: 123 VGASVVNALSEELEVYVHRDGKIHYQKYQRGVPCTDLQVVGET-DRTGTTVHFKPDPEIF 181

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   FD   L    +  A+L+  +K      +    K        + + GG+++Y++  
Sbjct: 182 TETTEFDYETLATRLRELAFLNRGLKITLEDKRVENRKNE------YCYEGGIQSYVKHL 235

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335
              R ++  E      E+ G +   VE A  + +       S+ N I T EGGTHESG +
Sbjct: 236 NRTREVLHEEPIYIIGERDGIY---VEIAFQYNDSYSSNIYSFVNNIHTHEGGTHESGFK 292

Query: 336 VALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
           +ALTR I  YA   Q  +    ++  +D+      I+S+    P+F GQTKTKL + DA+
Sbjct: 293 MALTRIINDYARKQQIFKDNDPNLTGEDVREGLTAIVSIKHPAPQFEGQTKTKLGNSDAR 352

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
              +    + F+ +L++NP  A K++E  ++        ++ +    RK+A+    LPGK
Sbjct: 353 TVTDAVFSEQFETFLLENPTIARKIVEKGMMAARARLAAKKARELTRRKSALEISNLPGK 412

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS      +EL++VEGDSAGGSAKQ R+R  QA+LPLRGKI+NV  A  +KI +N +
Sbjct: 413 LADCSSKDPSISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEKARLDKILSNNE 472

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           +  ++ ALG      +     RY K+IIMTDADVDGAHI +LLLTFFY+ M + IE+ ++
Sbjct: 473 VRAIITALGTGIGEDFDITKARYHKIIIMTDADVDGAHIRTLLLTFFYRYMREFIERGYV 532

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL++I Q  +  YA+++   +KIL E  ++   K  I R+KGLGEM   QL ET 
Sbjct: 533 YIAQPPLYKIEQDKQVRYAYNDRQLEKILAELPEN--PKPTIQRYKGLGEMNPEQLWETT 590

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           M+   RTLL+V +   +    +  ++   LMG K + R +FI+E A ++ ++ 
Sbjct: 591 MNPETRTLLQVSLQDAI----EADETFEILMGDKVEPRRQFIEENARYVKNLD 639


>gi|291165885|gb|EFE27932.1| DNA gyrase, B subunit [Filifactor alocis ATCC 35896]
          Length = 638

 Score =  648 bits (1671), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/653 (39%), Positives = 385/653 (58%), Gaps = 19/653 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              ++ +  Y A  I++LEGLEPVR RPGMYIG T  K LHHL  EV+DNA+DE +AG+ 
Sbjct: 2   SETENKNVQYGADQIQVLEGLEPVRKRPGMYIGSTGAKGLHHLVYEVVDNAIDEALAGFC 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             I V+++    + V+D+GRGIP E HPK   KST+E +LT LHAGGKF    Y++SGGL
Sbjct: 62  KTIYVAIEEGNAIRVIDDGRGIPTEVHPK-TGKSTVETVLTVLHAGGKFGTGGYKVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS    VTV R   I+ Q+FS+GI  + L++   V  + GT + F+PD +
Sbjct: 121 HGVGVSVVNALSTFFRVTVKRGGKIYVQEFSKGISETELQEVG-VTEETGTMVEFQPDAE 179

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   +    L    +  A+L+  +       +   E+        F + GGLK ++ 
Sbjct: 180 IFDEL-EYRYETLEYRLRELAFLNKGISIVLEDKRAGQEQKKE-----FSYLGGLKEFVV 233

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ +  ++   +   K      +E AI + +     I S+ N I T EGG H  G
Sbjct: 234 FLNKNKTPLHKDVIHFE---KQIDEYYLEIAIQYTDAYIENIYSFANNINTIEGGMHLIG 290

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            + ALTR I  Y + +   +  S+  +D+      I+S+ + EP++ GQTKTKL +   +
Sbjct: 291 FKTALTRTINDYLKKSNKNKEESLSGEDVREGLTAIISIKLPEPQYEGQTKTKLGNPQVR 350

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGK 452
             V++ L + F  YL +NP  A  ++E  +     R   ++ R++ R+   +    LPGK
Sbjct: 351 SVVDSFLAEYFGAYLEENPQVAKIIIEKAMNARSAREAAKRARDLTRRKGVLDSTSLPGK 410

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS+     +E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  +  ++I  +++
Sbjct: 411 LADCSERDPALSEIYIVEGDSAGGSAKQGRDRKTQAILPLRGKILNVEKSRLDRILTSEE 470

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I +++ A GC    ++ E  LRY K++IMTDADVDGAHI +LLLTF ++ M  LIE  ++
Sbjct: 471 IKNMITAFGCSIGEEFDESKLRYHKIVIMTDADVDGAHIRTLLLTFMFRYMKPLIENGYV 530

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPLF+I +G K VYA++E+    IL+EF +  K    I R+KGLGEM   QL ET 
Sbjct: 531 YIAQPPLFKIHRGKKEVYAYNEKELPAILQEFGEGHKPG--IQRYKGLGEMNPEQLWETT 588

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           M+ + RTLLRV +           D+ + LMG K + R +FI   A ++ ++ 
Sbjct: 589 MNPDTRTLLRVTVED----FSGADDTFSMLMGDKVEPRREFIHNNAQYVKNLD 637


>gi|239833957|ref|ZP_04682285.1| DNA topoisomerase IV, B subunit [Ochrobactrum intermedium LMG 3301]
 gi|239822020|gb|EEQ93589.1| DNA topoisomerase IV, B subunit [Ochrobactrum intermedium LMG 3301]
          Length = 732

 Score =  648 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 432/705 (61%), Positives = 536/705 (76%), Gaps = 26/705 (3%)

Query: 3   DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSP---------------------AFANQSAS 41
           DDS DLFS +   ++   ++  +  E P +P                     A    SA 
Sbjct: 31  DDSNDLFSRVVNNARAREQEQGRQSEKPVAPQPVAQPVAAPSLSVPKPVTAKAPPASSAG 90

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           D+Y+ASSIR+LEGLEPVR+RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+AN IEVS 
Sbjct: 91  DDYNASSIRVLEGLEPVRLRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHANFIEVSF 150

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           D +GF+TV DNGRGIPV+ HP+ P KSTLE+I+T LHAGGKFD   YE SGGLHGVG+SV
Sbjct: 151 DADGFVTVSDNGRGIPVDEHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVSV 210

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALSD L V VAR   ++ Q+FSRGIP   LE   +V N+RGTR+ F PDP IFG  A 
Sbjct: 211 VNALSDVLEVEVARNRRLYRQRFSRGIPQGGLEDVGEVHNRRGTRVRFHPDPDIFGKTAQ 270

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENR 280
           FD  RL +M +SKAYL G V+  W+CD  + + K   PEK  F+FPGGLK YL+  L   
Sbjct: 271 FDPHRLYRMARSKAYLFGGVEIRWNCDPSLLDPKKETPEKAVFHFPGGLKDYLEASLGKE 330

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
             ++ E+F GKTEK+G H G VEWA++W   +  + SYCNTI T +GGTHE+GLR+ALTR
Sbjct: 331 HQVTREVFAGKTEKQGGH-GAVEWAVSWFGGDGFVHSYCNTIPTGDGGTHEAGLRIALTR 389

Query: 341 GIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
           G+K YAELT NKRA  I +DD+M+SA G+LSVFIREPEF GQTK KL +++AQR VENA+
Sbjct: 390 GLKAYAELTNNKRASIITTDDVMVSAAGMLSVFIREPEFVGQTKDKLATVEAQRIVENAI 449

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
           RDPFDH+L  +P EA++LLEWVI+R++ERLRRR+++E  RK+A RKLRLPGKLADC+QN 
Sbjct: 450 RDPFDHWLTASPQEASRLLEWVIDRADERLRRRQEKETVRKSATRKLRLPGKLADCTQNA 509

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
           A G ELFIVEGDSAGGSAKQARNR+NQA+LPLRGKILNVASAG EK+  NQQI DL+QAL
Sbjct: 510 AAGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLTANQQIADLIQAL 569

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           GC TR  YRE+DLRY++VI+MTDADVDGAHIASLL+TFFYQEM DLI   HL+L  PPLF
Sbjct: 570 GCGTRKNYREDDLRYDRVIVMTDADVDGAHIASLLITFFYQEMPDLIRNGHLYLAVPPLF 629

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           R++QG K  YA DE HK ++L      G+GK+EI RFKGLGEM A QLKET MD  KRTL
Sbjct: 630 RLSQGGKVAYARDEAHKDELLRTMF-TGRGKVEIGRFKGLGEMRAEQLKETTMDPKKRTL 688

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           LRV+++++     +T++++++LMGTK + RF+FIQ+RA+F++++ 
Sbjct: 689 LRVQVDEEYVD--ETRNTVDELMGTKPEARFRFIQDRAAFVEELD 731


>gi|292669300|ref|ZP_06602726.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Selenomonas noxia
           ATCC 43541]
 gi|292649141|gb|EFF67113.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Selenomonas noxia
           ATCC 43541]
          Length = 685

 Score =  648 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/652 (39%), Positives = 371/652 (56%), Gaps = 23/652 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            +   +Y A  I++LEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +AGY + +
Sbjct: 52  TAVDADYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVYEVVDNSIDEALAGYCDNV 111

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           EV +  +  +TV DNGRGIPV+ H        +E++LT LHAGGKF    Y++SGGLHGV
Sbjct: 112 EVVIHKDNSITVTDNGRGIPVDMHE--SGMPAVEVVLTVLHAGGKFGGDGYKVSGGLHGV 169

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS  + V V R   I+   F+RG+ ++ L +   +    GTR+ F PDP+IF 
Sbjct: 170 GVSVVNALSSSMEVEVRRDGKIYEISFTRGVTVNKLHEIG-ISETTGTRVHFVPDPEIFT 228

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               +    L    +  A+L+  +      ++   E+        F+F GG+++++    
Sbjct: 229 VTT-YSFETLKHRLRELAFLNHGITITLVDERGEEERRET-----FHFEGGIRSFVSHLN 282

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
             +  I+ E       K  T    VE A+ + +     I S+ N I T+EGGTH +G ++
Sbjct: 283 RKKETINEEPIYFNGVKDDT---VVEIAMQYNDSYQENIYSFVNNINTEEGGTHLAGFKI 339

Query: 337 ALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR    +A        +  ++  +D+      ++S+ +REP+F GQTKTKL + + + 
Sbjct: 340 ALTRAANDFARRLSVLKDKDGNLSGEDVREGLTCVISLKVREPQFEGQTKTKLGNSEVRG 399

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            V++ + +    Y  +NP    K+LE  +  S  R   RK RE   RK A+    LPGKL
Sbjct: 400 IVDSIVTEGLTEYFEENPAITKKVLEKGLMASRAREAARKARELTRRKNALEVSSLPGKL 459

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS       E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI  N +I
Sbjct: 460 ADCSVKDPDQCEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKIFANAEI 519

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A G     ++     RY K+IIMTDADVDGAHI +LLLTFFY+ M  L++  H++
Sbjct: 520 RTMITAFGTGIGEEFDLSKRRYSKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVDHGHVY 579

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           +  PPL++I +  K  Y + +E + K L+E  + G   + I R+KGLGEM   QL ET M
Sbjct: 580 IAQPPLYQIRKDKKHFYTYSDEEQAKKLDEIGRDG---VTIQRYKGLGEMNPEQLWETTM 636

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +   RT+L+V         +   +    LMG K + R +FI+E A  + ++ 
Sbjct: 637 NPEGRTMLQV----GAEDAEAADELFTILMGDKVEPRRQFIEENARLVRNLD 684


>gi|153812024|ref|ZP_01964692.1| hypothetical protein RUMOBE_02417 [Ruminococcus obeum ATCC 29174]
 gi|149831923|gb|EDM87009.1| hypothetical protein RUMOBE_02417 [Ruminococcus obeum ATCC 29174]
          Length = 641

 Score =  648 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/648 (40%), Positives = 382/648 (58%), Gaps = 19/648 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y A  I+ILEGLE VR RPGMYIG T  + LHHL  E++DNA+DE +AG+   I+V+++
Sbjct: 7   EYGADQIQILEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNAVDEALAGFCTEIQVTIN 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TVVDNGRGIPV  + K      +E++ T LHAGGKF    Y++SGGLHGVG SVV
Sbjct: 67  PDNSITVVDNGRGIPVGINHKA-GIPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGASVV 125

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE-KVRNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L VT+ R+   + Q++ RG  + PL++       + GT++TF PD +IF +   
Sbjct: 126 NALSEWLEVTICREGKKYQQRYERGHTMYPLKEIGVCDPEETGTKVTFLPDKEIFEETI- 184

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +D   L +  +  A+L+  ++      +E  EK        F++ GG++ ++     ++ 
Sbjct: 185 YDYDILKQRLREMAFLTKGLRIVLKDTREDQEKEKA-----FHYEGGIREFVTYLNRSKE 239

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            +  E+   + EK G     VE A+   +        + N I T EGGTH  G R ALT+
Sbjct: 240 ALYPEVIYCEGEKDGVM---VEVAMQHNDSYTENSYGFVNNINTPEGGTHIVGFRNALTK 296

Query: 341 GIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
               YA   +  +    ++  DD+      I+SV I EP+F GQTK KL + +A+  V+ 
Sbjct: 297 TFNDYARKNKLLKDSEPNLSGDDIREGLTAIVSVKIEEPQFEGQTKQKLGNSEARGAVDF 356

Query: 399 ALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
            +    + +L QNP  A   +E  V+ +      R+ +    RK+A+  + LPGKLADCS
Sbjct: 357 VVSKQLEIFLEQNPTVAKATVEKSVLAQRAREAARKARDLTRRKSALDGMSLPGKLADCS 416

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                  E++IVEGDSAGGSAK ARNR+ QA+LPLRGKILNV  A  ++I +N +I  ++
Sbjct: 417 DKNPENCEIYIVEGDSAGGSAKTARNRATQAILPLRGKILNVEKARLDRIYSNAEIKAMI 476

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A G      +    LRY K+IIMTDADVDGAHIA+LLLTF Y+ M +LI+Q +++L  P
Sbjct: 477 TAFGTGIHEDFDITKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGYVYLAQP 536

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+++ +  K  YA+D+     ILE+  +    K  I R+KGLGEM A QL ET MD  K
Sbjct: 537 PLYKVEKNKKVWYAYDDAELNSILEQIGRDNNNK--IQRYKGLGEMDAEQLWETTMDPEK 594

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           R LLRV +++  ++  +   +   LMG K + R +FI+E A F++++ 
Sbjct: 595 RILLRVTMDE--SATSEIDLTFTTLMGDKVEPRREFIEENARFVENLD 640


>gi|295135619|ref|YP_003586295.1| DNA gyrase subunit B [Zunongwangia profunda SM-A87]
 gi|294983634|gb|ADF54099.1| DNA gyrase subunit B [Zunongwangia profunda SM-A87]
          Length = 646

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/661 (39%), Positives = 397/661 (60%), Gaps = 24/661 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + ++    Y A SI+ LEG+E VRMRP MYIG T  + LHHL  EV+DN++DE +AG+ 
Sbjct: 1   MSEEAKEKKYSADSIQALEGMEHVRMRPSMYIGDTGVRGLHHLVYEVVDNSIDEALAGHC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I+V ++ +  +TV DNGRGIP++ H K    S LE+++T + AGGKFD  +Y++SGGL
Sbjct: 61  DAIKVDINEDNSITVEDNGRGIPIDLHKK-EGVSALEVVMTKIGAGGKFDKDSYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+S VNALS  L  TV R   I+ Q++  G P+ P++   +     GT +TF+PDP 
Sbjct: 120 HGVGVSCVNALSTHLKATVYRDGQIWEQEYEIGKPMYPVKPVGET-ELSGTIVTFKPDPS 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     +    L K  +  A+L+  ++   +  +E  EK      EEF+   GLK +++
Sbjct: 179 IFQQTLEYSYETLAKRMRELAFLNKGIRIVLTDKREKDEKG-EFLSEEFHSEEGLKEFIR 237

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333
                R  I +++ + + EK G     VE A+ + +   E    Y N I T EGGTH SG
Sbjct: 238 FLDGTREPIIADVISMEGEKNGIP---VEVALVYNDTFNENLHSYVNNINTHEGGTHLSG 294

Query: 334 LRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R  LT  +KKYA+ +     +      DD       I+SV + EP+F GQTKTKL + +
Sbjct: 295 FRRGLTTTLKKYADASGLLEKVKFEVTGDDFREGLTAIISVKVAEPQFEGQTKTKLGNRE 354

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLP 450
               V  A+ +  ++YL +NP +A  +++ VI  ++ R   +K RE+  RKTA+    LP
Sbjct: 355 VTSAVSQAVSEMLENYLEENPNDAKTIVQKVILAAQARNAAKKAREMVQRKTAMSIGGLP 414

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV  A S ++ +N
Sbjct: 415 GKLSDCSEQDPKKCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMSHRVFDN 474

Query: 511 QQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           ++I ++  ALG    ++   +      LRY K++IM DADVDG+HI +L+LTFF++ M +
Sbjct: 475 EEIKNIYTALGVTIGTEEDSKALNLSKLRYHKIVIMCDADVDGSHIETLILTFFFRYMKE 534

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           LIEQ H+++ +PPL+ + +G+K  YA +E+ + +I +E+     G I+I R+KGLGEM A
Sbjct: 535 LIEQGHIYIATPPLYLVKKGSKKRYAWNEKERDEIADEYS----GGIQIQRYKGLGEMNA 590

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL +T MD  +R L +V I+    +  +     + LMG +   R +FI++ A +  ++ 
Sbjct: 591 EQLWDTTMDPERRKLRQVTID----NSGEADRIFSMLMGDEVPPRREFIEKNAKYA-NID 645

Query: 686 T 686
            
Sbjct: 646 A 646


>gi|317126747|ref|YP_004093029.1| DNA gyrase subunit beta [Bacillus cellulosilyticus DSM 2522]
 gi|315471695|gb|ADU28298.1| DNA gyrase, B subunit [Bacillus cellulosilyticus DSM 2522]
          Length = 640

 Score =  647 bits (1668), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/648 (40%), Positives = 387/648 (59%), Gaps = 21/648 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +YD S I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AGY + I V++
Sbjct: 9   QSYDESQIQVLEGLEAVRKRPGMYIGSTSGRGLHHLVWEIVDNSIDEAMAGYCDTITVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +  +TV DNGRGIPV  H K   +  +E+I+T LHAGGKF    Y++SGGLHGVG SV
Sbjct: 69  EEDNSITVEDNGRGIPVGIHEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASV 127

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS +L V V     +  Q F RG+P + L+   +  +K GT I F+PD +IF +   
Sbjct: 128 VNALSTKLEVEVHLDGKVHYQMFERGVPSADLKVIGET-DKTGTIIKFKPDNEIFTETTE 186

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +D   L    +  A+L+  ++   S  +   +K        +++ GG+ ++++     + 
Sbjct: 187 YDYDTLANRLRELAFLNRGLRILISDKRNDGKKAE------YFYEGGISSFVEHLNRTKE 240

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I       ++EK G    +VE A+ + +     + S+ N I T EGGTHESG + ALTR
Sbjct: 241 PIHEPPVFIESEKDGI---SVEIAMQYNDSFASNLYSFANNINTHEGGTHESGFKTALTR 297

Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  YA      +    ++I DD+      I+SV I +P+F GQTKTKL + +A+   ++
Sbjct: 298 VINDYARKNSLFKETDPNLIGDDVREGLTAIISVKIPDPQFEGQTKTKLGNSEARTITDS 357

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
              +    Y+ +NP  A K++E  I  S  R   +K RE   RK+A+    LPGKLADCS
Sbjct: 358 LFSEHMAKYMAENPNVARKIVEKGIMASRARDAAKKARELTRRKSALEVSSLPGKLADCS 417

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
              A  +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  +  +KI +N ++  ++
Sbjct: 418 SKDATISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKSRLDKILSNNEVRAII 477

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG      +     RY K+IIMTDADVDGAHI +LLLTFFY+ M  L+E+ ++++  P
Sbjct: 478 TALGTGIGGDFDISKARYHKIIIMTDADVDGAHIRTLLLTFFYRYMRPLLEEGYVYIAQP 537

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PLF+I QG    YA++E+  ++I++E  +  K    + R+KGLGEM  +QL ET MD + 
Sbjct: 538 PLFKIQQGKTVQYAYNEKEMERIIKELAETPKPG--LQRYKGLGEMNPTQLWETTMDPST 595

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           RT L+V +   +       ++   LMG K + R +FIQ  A ++ ++ 
Sbjct: 596 RTTLQVTLEDAMV----ADETFETLMGDKVEPRREFIQANAQYVKNLD 639


>gi|304405884|ref|ZP_07387542.1| DNA gyrase, B subunit [Paenibacillus curdlanolyticus YK9]
 gi|304345127|gb|EFM10963.1| DNA gyrase, B subunit [Paenibacillus curdlanolyticus YK9]
          Length = 636

 Score =  647 bits (1668), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/648 (40%), Positives = 378/648 (58%), Gaps = 22/648 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + YD S I++LEGLE VR RPGMYIG T  K LHHL  EV+DN++DE +AG+   I+V +
Sbjct: 6   NTYDESQIQVLEGLEAVRKRPGMYIGSTSSKGLHHLVWEVVDNSIDEALAGFCTHIDVIV 65

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  +TVVDNGRGIPV  + K   KST+E+++T LHAGGKF    Y++SGGLHGVG+SV
Sbjct: 66  HEDNSITVVDNGRGIPVGENTKL-KKSTVEVVMTVLHAGGKFGGEGYKVSGGLHGVGVSV 124

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+ + VTV R   ++ Q++ RG P   ++         GT + F+PDP+IF +   
Sbjct: 125 VNALSEHVTVTVKRDGHVYQQEYRRGAPQYDIKVIGDSEE-TGTIVQFKPDPEIFTETTV 183

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L    +  A+L+  +    + ++         +   + + GG+  +++    NR 
Sbjct: 184 YEYEILQSRIRELAFLNKGISISLTDER-------TGQSNIYKYDGGIIEFVKYLNRNRE 236

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340
            +       + EK       VE A+ + +   +   S+ N I T EGGTHESG + ALTR
Sbjct: 237 ALHETPIYVEGEKDHIQ---VEVALQYNDSYSDNIYSFANNINTHEGGTHESGFKSALTR 293

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  YA  T        ++  DD+      I+SV I EP+F GQTKTKL + + +  VE+
Sbjct: 294 IINDYARRTNSIKDNDSNLSGDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGIVES 353

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
              +    +L +NP  + +++E  ++ S  R   RK RE   RK+A+    LPGKLADCS
Sbjct: 354 FFAEKLQEFLDENPSVSKRIVEKGLQASRAREAARKARELTRRKSALEVSSLPGKLADCS 413

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
              A  +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  ++I  N +I  ++
Sbjct: 414 SKDASISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDRILGNAEIRAII 473

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG      +     RY K+IIMTDADVDGAHI +LLLTFFY+ M  +I+   +++  P
Sbjct: 474 TALGTGIGDDFDIAKARYHKIIIMTDADVDGAHIRTLLLTFFYRYMRKIIDAGFIYIAQP 533

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PLF++ +     YA  E+ + +I+ EF +    K+ + R+KGLGEM A+QL ET MD   
Sbjct: 534 PLFKVERNKVVRYAQSEKERDQIIAEFGE--GVKVNVQRYKGLGEMNATQLWETTMDPES 591

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           RT+L+V I   +    +     + LMG   + R  FI + A ++ ++ 
Sbjct: 592 RTMLQVTIEDAM----EADVVFDTLMGDNVEPRRDFIHQYAKYVKNLD 635


>gi|282855958|ref|ZP_06265249.1| DNA gyrase, B subunit [Pyramidobacter piscolens W5455]
 gi|282586177|gb|EFB91454.1| DNA gyrase, B subunit [Pyramidobacter piscolens W5455]
          Length = 632

 Score =  647 bits (1668), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/648 (41%), Positives = 384/648 (59%), Gaps = 21/648 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S  Y A  I+ILEGL+PVR RPGMYIG T  + LHH   EV+DN++DE + G+ + I V+
Sbjct: 2   STQYTAEDIQILEGLDPVRKRPGMYIGDTTTRGLHHCVYEVVDNSVDEALGGFCSEITVT 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  ++V DNGRGIPV+ HP    +  LE++LT LHAGGKFDN  Y+ISGGLHGVG+S
Sbjct: 62  LHADQSVSVSDNGRGIPVDPHPSN-GRPALEVVLTVLHAGGKFDNHNYKISGGLHGVGVS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ L VTV R    + ++F RG P+S L         RGT +TFRPD +IF +  
Sbjct: 121 VVNALSEWLEVTVYRDGREWHERFERGTPVSGLTGGTPTAK-RGTTVTFRPDAEIFDEV- 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F A  L    +  A+L   +K  +  +          +   +++ GG+  ++    + +
Sbjct: 179 AFSAETLGNRFREMAFLIPGLKFIFVDE-------AEGKTWTYHYEGGVSEFVAYINKGK 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
             ++      + EK G     VE    + +E    + S+ N I T EGGTH +GLR ALT
Sbjct: 232 QTLTPRPIVIRGEKDGV---AVEAGFQYTDEYIERLYSFANLINTIEGGTHVAGLRSALT 288

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           RGI + A       ++  ++  DDL      +LSV +  P+F GQTKTKL + + +  V+
Sbjct: 289 RGINEGARRAGVLKEKDENLSGDDLREGLTCVLSVKLGNPQFEGQTKTKLGNGNVKGIVD 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
           + L D     L ++P     ++E  I+  + R   +K RE+ RK+A+  L LPGKLADCS
Sbjct: 349 SLLYDGILQALEEDPSVIKPIIEKAIKARQAREAAKKARELVRKSALSGLSLPGKLADCS 408

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
              A   E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +K+  +++I  ++
Sbjct: 409 SRTAENCEVYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARMDKMLGSKEIRVII 468

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
           QALGC     +    LRY K+IIMTDADVDGAHI++LLLTFF++ M +LIE+ H++   P
Sbjct: 469 QALGCGIGEDFDIGKLRYNKIIIMTDADVDGAHISTLLLTFFFRHMRELIEKGHVYQAVP 528

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+R+  G K  Y + ++  +K ++     GK K  + R+KGLGEM   QL ET MD   
Sbjct: 529 PLYRVQVGKKVDYLYSDKELRKFMDGLAADGK-KAAVQRYKGLGEMNPGQLWETTMDPAT 587

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           R L ++E++     L    +  + LMG + + R +FI++ A  + ++ 
Sbjct: 588 RLLKQIELDD----LAGADEYFDILMGDRVEPRRQFIEQHAHEVHNLD 631


>gi|291547631|emb|CBL20739.1| DNA gyrase subunit B [Ruminococcus sp. SR1/5]
          Length = 641

 Score =  647 bits (1668), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/648 (40%), Positives = 377/648 (58%), Gaps = 19/648 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y A  I+ILEGLE VR RPGMYIG T  + LHHL  E++DNA+DE +AG+   I V ++
Sbjct: 7   EYGADQIQILEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNAVDEALAGFCTEIHVDIN 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV DNGRGIPV  + K      +E++ T LHAGGKF    Y++SGGLHGVG SVV
Sbjct: 67  PDNSITVTDNGRGIPVGINHKA-GIPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGASVV 125

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L VT+ R+   + Q++ RG  + PL+          GT++ F PD +IF +   
Sbjct: 126 NALSEWLEVTIYREGKEYKQRYERGKTMYPLKVVGDCDPGLSGTKVYFLPDKEIFEETV- 184

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +D   L +  +  A+L+  ++      +E  E+  +     F++ GG++ ++     ++ 
Sbjct: 185 YDYDILKQRLREMAFLTKGLRIVLEDKREGQEREKV-----FHYEGGIREFVSYLNRSKE 239

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            +  EI   + EK G    +VE A+   +        + N I T EGGTH +G R A+T 
Sbjct: 240 ALYPEIIYCEGEKDGV---SVEVALQHNDSYTENTYGFVNNINTPEGGTHITGFRNAITN 296

Query: 341 GIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
               YA   +  +    ++  DD+      I+SV I  P+F GQTK KL + +A+  V++
Sbjct: 297 TFNDYARKNKLLKDSEPNLSGDDIREGLTAIVSVKIENPQFEGQTKQKLGNSEARGAVDS 356

Query: 399 ALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
            +    + +L QNP  A   +E  V+ +      R+ +    RK+A+  + LPGKLADCS
Sbjct: 357 VVSKQLEIFLEQNPAVAKATVEKSVLAQRAREAARKARDLTRRKSALDSMSLPGKLADCS 416

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                  E++IVEGDSAGGSAK ARNR+ QA+LPLRGKILNV  A  +KI  N++I  ++
Sbjct: 417 DKNPENCEIYIVEGDSAGGSAKTARNRATQAILPLRGKILNVEKARLDKIYGNKEIKAMI 476

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A G      +    LRY K+IIMTDADVDGAHIA+LLLTF Y+ M +LI+Q +++L  P
Sbjct: 477 TAFGTGIHEDFDISKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGYVYLAQP 536

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+++ +  K  YA+D++    IL E  + G  K  I R+KGLGEM A QL ET MD  K
Sbjct: 537 PLYKVEKNKKVWYAYDDDELNNILTEIGRDGNNK--IQRYKGLGEMDAEQLWETTMDPEK 594

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           R LLRV +++   +  +   +   LMG K + R +FI+E A F+ ++ 
Sbjct: 595 RILLRVTMDEA--ATSEIDLTFTTLMGDKVEPRREFIEENARFVKNLD 640


>gi|295108649|emb|CBL22602.1| DNA gyrase subunit B [Ruminococcus obeum A2-162]
          Length = 641

 Score =  647 bits (1668), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/648 (40%), Positives = 381/648 (58%), Gaps = 19/648 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y A  I+ILEGLE VR RPGMYIG T  + LHHL  E++DNA+DE +AG+   I+V+++
Sbjct: 7   EYGADQIQILEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNAVDEALAGFCTEIQVTIN 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TVVDNGRGIPV  + K      +E++ T LHAGGKF    Y++SGGLHGVG SVV
Sbjct: 67  PDNSITVVDNGRGIPVGVNHKA-GIPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGASVV 125

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKAG 221
           NALS+ L V++  +   + Q++ RG  + PL+        K GT +TF PD +IF +   
Sbjct: 126 NALSEWLEVSIYHEGKEYKQRYERGHTMYPLKVVGDCEEGKTGTTVTFLPDKEIFEETV- 184

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +D   L +  +  A+L+  ++     ++E ++K        F++ GG++ ++     ++ 
Sbjct: 185 YDYDILKQRLREMAFLTKGLRIVLKDEREDSKKEKT-----FHYEGGIREFVTYLNRSKE 239

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            +  E+   + EK G     VE A+   +        + N I T EGGTH  G R ALT+
Sbjct: 240 SLYPEVIYCEGEKDGV---AVEVAMQHNDSYTENSYGFVNNINTPEGGTHIVGFRNALTK 296

Query: 341 GIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
               YA   +  +    ++  DD+      I+SV I EP+F GQTK KL + +A+  V+ 
Sbjct: 297 TFNDYARKNKLLKDSEPNLSGDDIREGLTAIVSVKIEEPQFEGQTKQKLGNSEARGAVDF 356

Query: 399 ALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
            +    + +L QNP  A   +E  V+ +      R+ +    RK+A+  + LPGKLADCS
Sbjct: 357 VVSRQLEIFLEQNPTVAKATVEKSVLAQRAREAARKARDLTRRKSALDGMALPGKLADCS 416

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                  E++IVEGDSAGGSAK ARNR+ QA+LPLRGKILNV  A  ++I +N +I  ++
Sbjct: 417 DKDPKNCEIYIVEGDSAGGSAKTARNRATQAILPLRGKILNVEKARLDRIYSNAEIKAMI 476

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A G      +    LRY K+IIMTDADVDGAHIA+LLLTF Y+ M +LI+Q +++L  P
Sbjct: 477 TAFGTGIHDDFDISKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGYVYLAQP 536

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+++ +  K  YA+D+     ILE+  +    K  I R+KGLGEM A QL ET MD  K
Sbjct: 537 PLYKVEKNKKVWYAYDDAELNSILEQIGRDNNNK--IQRYKGLGEMDAEQLWETTMDPEK 594

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           R LLRV +++  ++  +   +   LMG K + R +FI+E A F++++ 
Sbjct: 595 RILLRVTMDE--SATSEIDLTFTTLMGDKVEPRREFIEENARFVENLD 640


>gi|294495525|ref|YP_003542018.1| DNA gyrase subunit B [Methanohalophilus mahii DSM 5219]
 gi|292666524|gb|ADE36373.1| DNA gyrase subunit B [Methanohalophilus mahii DSM 5219]
          Length = 634

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/647 (40%), Positives = 390/647 (60%), Gaps = 21/647 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           D YDA+ I++LEGLE VR RP MYIG  D + LHHL  EV+DN++DE +AGY   I+VS+
Sbjct: 5   DVYDATHIQVLEGLEAVRKRPSMYIGSIDGRGLHHLVYEVVDNSIDEALAGYCTSIDVSI 64

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G +TV D+GRGIP + H K+  KS LE+++T LHAGGKFD S+Y++SGGLHGVG+SV
Sbjct: 65  NRDGSVTVRDDGRGIPTDIHSKY-KKSALEVVMTILHAGGKFDKSSYKVSGGLHGVGVSV 123

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+   V V R   IF Q++ RG PL  + +K       GT +TF+PD  IF     
Sbjct: 124 VNALSEWNDVEVHRNGKIFYQRYVRGKPLDDVIEKGDT-ESTGTSMTFKPDTDIFETV-D 181

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F+   L+   +  A+L+  +K   +  +        P +E F + GG+ ++++   ++R+
Sbjct: 182 FNFETLVTRLRELAFLNRGIKIVITDKRSD-----EPLQEVFEYDGGIVSFVEYLNKSRN 236

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340
           ++  +    + EK+ T    VE A+ + +   E   S+ N I T EGGTH +G + ALTR
Sbjct: 237 VLHEQPIYFEREKEDT---RVEIAMQYTDSYGEYVYSFANNINTHEGGTHLAGFKSALTR 293

Query: 341 GIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
               YA+     +  I +  DD+     GI+SV + +P+F GQTKTKL + + +  V++ 
Sbjct: 294 VANDYAKSNNLAKGDIKLSGDDIREGLAGIISVKLMDPQFEGQTKTKLGNSELKGIVDSM 353

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    ++ +NP  A+ +L+  ++    R   +K RE   RK+A+    LPGKLADCS+
Sbjct: 354 VSEGLSEFMEENPKIASAILQKAMDARRAREAAKKARELTRRKSALEVSTLPGKLADCSE 413

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+++VEGDSAGGSAK  R+R  QA+LP RGKILNV  +   +I  N +I+ L+ 
Sbjct: 414 KDPSVSEIYLVEGDSAGGSAKMGRDRRFQAILPFRGKILNVEKSRLARILKNNEILSLIT 473

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+G     +Y     RY KV+IMTDADVDGAHI +L+LTFF++ M  LI+  ++++  PP
Sbjct: 474 AMGTGIGDEYDLTKARYHKVVIMTDADVDGAHIRTLMLTFFFRYMTPLIDAGYVYIAQPP 533

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+ I +G    +A+ E  K +I+EE  + G   + I R+KGLGEM   QL ET M+   R
Sbjct: 534 LYSIKKGKNQRFAYTEREKDRIIEEIGEKG---VSIQRYKGLGEMNPDQLWETTMNPQTR 590

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T+L+V +   +       +  + LMG +   R KFIQE A  + ++ 
Sbjct: 591 TILQVTMEDAV----AADEMFSVLMGDEVAPRRKFIQEHAKDVINLD 633


>gi|239825589|ref|YP_002948213.1| DNA gyrase subunit B [Geobacillus sp. WCH70]
 gi|239805882|gb|ACS22947.1| DNA gyrase, B subunit [Geobacillus sp. WCH70]
          Length = 640

 Score =  646 bits (1665), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/653 (40%), Positives = 386/653 (59%), Gaps = 21/653 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            Q     YDAS I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY   
Sbjct: 4   EQKIEHTYDASQIQVLEGLEAVRKRPGMYIGSTGPKGLHHLVWEIVDNSIDEALAGYCTE 63

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V+++ +  + + DNGRGIPV+   K   +  +E+I+T LHAGGKF    Y++SGGLHG
Sbjct: 64  INVTIEKDNIIAITDNGRGIPVDIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS+EL V V R   I  QK+ RG+P + LE   +  ++ GT + F+PDP+IF
Sbjct: 123 VGASVVNALSEELEVYVHRDGKIHYQKYQRGVPCTDLEVIGET-DRTGTTVRFKPDPEIF 181

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   FD   L    +  A+L+  +K      +    K        +++ GG+K+Y++  
Sbjct: 182 TETTEFDYETLATRLRELAFLNRGLKITLEDKRVENRKNE------YHYEGGIKSYVKHL 235

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335
              R ++  E      E+ G +   VE A+ + +       S+ N I T EGGTHESG +
Sbjct: 236 NRTREVLHEEPIYIIGERDGIY---VEIALQYNDSYSSNIYSFVNNIHTHEGGTHESGFK 292

Query: 336 VALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR I  YA   Q  +    ++  +D+      I+S+    P+F GQTKTKL + DA+
Sbjct: 293 TALTRIINDYARKHQILKDNDPNLTGEDVREGLTAIVSIKHPSPQFEGQTKTKLGNSDAR 352

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
              +    + F+ +L++NP  A K++E  ++        ++ +    RK+A+    LPGK
Sbjct: 353 AVTDAIFSEQFETFLLENPTIARKIVEKGMMAARARLAAKKARELTRRKSALEISNLPGK 412

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS      +EL++VEGDSAGGSAKQ R+R  QA+LPLRGKI+NV  A  +KI +N +
Sbjct: 413 LADCSSKDPSISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEKARLDKILSNNE 472

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           +  ++ ALG      +     RY K+IIMTDADVDGAHI +LLLTFFY+ M + IE+ ++
Sbjct: 473 VRAIITALGTGIGEDFDITKARYHKIIIMTDADVDGAHIRTLLLTFFYRYMREFIERGYV 532

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL++I QG +  YA+++   +KIL E  ++   K  I R+KGLGEM   QL ET 
Sbjct: 533 YIAQPPLYKIEQGKQVKYAYNDRQLEKILAELPEN--PKPTIQRYKGLGEMNPEQLWETT 590

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           M+   RTLL+V +   +    +  ++   LMG K + R +FI+E A ++ ++ 
Sbjct: 591 MNPETRTLLQVSLQDAI----EADETFEILMGDKVEPRRQFIEENARYVKNLD 639


>gi|167770843|ref|ZP_02442896.1| hypothetical protein ANACOL_02196 [Anaerotruncus colihominis DSM
           17241]
 gi|167666883|gb|EDS11013.1| hypothetical protein ANACOL_02196 [Anaerotruncus colihominis DSM
           17241]
          Length = 662

 Score =  646 bits (1665), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/650 (39%), Positives = 371/650 (57%), Gaps = 19/650 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
              YD S I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AG+   IEV 
Sbjct: 26  EQEYDGSQIQVLEGLEAVRKRPGMYIGSTGPRGLHHLVYEIVDNSIDEALAGHCTKIEVD 85

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L     + V DNGRGIPV   PK      + ++ T LHAGGKF  S Y++SGGLHGVG S
Sbjct: 86  LLPGNIVKVSDNGRGIPVGIQPKL-GIPAVTVVFTVLHAGGKFGGSGYKVSGGLHGVGAS 144

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ L V V   +  + Q+F RG+ + PL+        +GT + F+ D  IF +  
Sbjct: 145 VVNALSEWLEVEVCDGSARYYQRFERGVAVEPLKNTGPTEE-KGTSVAFKADAAIFEETT 203

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +D   LL+  + +A+L+  V       +        P +E  ++ GG++++++   +++
Sbjct: 204 EYDYDTLLRRLREQAFLNAGVYIVLRDQR-----GTEPVEEHLHYEGGIRSFVEHIHKSK 258

Query: 281 --SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVA 337
               I  EI             T E A+ + +   + I S+ N I T +GGTHESG + A
Sbjct: 259 GVEPIHDEIIYLAARDGDN---TAEVAMQYNDSYTDLILSFANNIHTTDGGTHESGFKTA 315

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           LTR +  YA   +  K       +D++     I+SV + + +F GQTK +L +   +  V
Sbjct: 316 LTRTMNDYAHKYKLLKDDEKFSGEDVLEGLTAIVSVKLTDAQFEGQTKARLGNTQMRAMV 375

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR-KTAIRKLRLPGKLAD 455
            + + +    Y  +NP  A  ++E  I  S  R   R+ R+V R K+A+    LPGKLAD
Sbjct: 376 SSLVYEKLTTYYEENPAVAKAIIEKSINASRAREAARRARDVARRKSALETASLPGKLAD 435

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CSQ    GTE++IVEGDSAGGSAK  R+R  QA+LPL GK+LNV  A  +K+  N ++M 
Sbjct: 436 CSQRGRDGTEIYIVEGDSAGGSAKMGRDRRFQAILPLWGKMLNVEKARLDKVYGNDKLMP 495

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ ALG     ++  E LRY KVIIM DADVDG+HI +LLLTFF++ M  LIE  H+ + 
Sbjct: 496 VITALGTGIGDEFDIEKLRYGKVIIMADADVDGSHIRTLLLTFFFRFMRPLIEHGHVCIA 555

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPLF++++G +  YA  +E + + + E    G GK ++ R+KGLGEM   QL ET MD 
Sbjct: 556 QPPLFKVSRGKQVRYAFSDEERDQYIRELCPDGSGKADVQRYKGLGEMDPEQLWETTMDP 615

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             RT+LRVE+   +       +    LMG K   R  FI++ A ++ ++ 
Sbjct: 616 RNRTMLRVEMADAIR----ADEIFTVLMGDKVAPRKDFIEQNAKYVQNLD 661


>gi|237736253|ref|ZP_04566734.1| DNA gyrase subunit B [Fusobacterium mortiferum ATCC 9817]
 gi|229421601|gb|EEO36648.1| DNA gyrase subunit B [Fusobacterium mortiferum ATCC 9817]
          Length = 635

 Score =  645 bits (1664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/649 (40%), Positives = 372/649 (57%), Gaps = 20/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S+NY A  I +LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AGY   IEVS
Sbjct: 2   SNNYQAEDITVLEGLEAVRKRPGMYIGTTSERGLHHLVWEIVDNSVDEALAGYCTHIEVS 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  + VVDNGRGIPV+ HPK+  KS LEI+LT LHAGGKF+N  Y++SGGLHGVG+S
Sbjct: 62  ILPDNVIEVVDNGRGIPVDIHPKY-GKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGVS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS    V V +   ++ QK++RGIP   +++        GT + F+ D +IF    
Sbjct: 121 VVNALSLWTEVEVRKNGKVWYQKYNRGIPEEAVKEIGITEEH-GTTVRFKADHEIFETLV 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +D   L    +  AYL+  +    +  ++   K      E F F GG+  +L+   E+ 
Sbjct: 180 -YDYNTLKNRLKELAYLNKGLVITLTDSRKEPFKK-----EIFEFEGGIADFLREITEDT 233

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALT 339
             +  E      E        VE A  +   ++  I S+ N I T EGGTH  G R ALT
Sbjct: 234 EKLIKEPIYMTGEVDNI---GVEIAFLYTVNQSEIIYSFVNNINTHEGGTHVQGFRTALT 290

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I    +       +   +   D+      I+SV + +P+F GQTKTKL + +    V 
Sbjct: 291 RIINDVGKAQGLLKDKDGKLQGTDIREGVTAIVSVKVPQPQFEGQTKTKLGNSEVTGIVS 350

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN-RKTAIRKLRLPGKLADC 456
             +       L  NP +   ++E ++   + R   ++ RE+  RK+A+    LPGKLADC
Sbjct: 351 TVVGGQLKMILEDNPNDTKVIIEKILNSKKAREAAQRARELVLRKSALEVGSLPGKLADC 410

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S       E++IVEGDSAGGSAKQ R+R +QA+LPLRGKILNV  AG  K   N ++  +
Sbjct: 411 SSKNPEECEIYIVEGDSAGGSAKQGRDRYHQAILPLRGKILNVEKAGLHKALENNEVRAM 470

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A G      +  E LRY K+I+MTDADVDGAHI +LLLTF Y+ M +LI   ++F+  
Sbjct: 471 ITAFGTGIGDNFNIEKLRYGKIILMTDADVDGAHIRTLLLTFIYRYMIELIYNGNVFIAQ 530

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL++I+ G +  YA+ +   ++I E F+   K K  + R+KGLGEM   QL ET MD  
Sbjct: 531 PPLYKISYGKQIKYAYSDRELKEITEAFEGEDK-KYTLQRYKGLGEMNPEQLWETTMDPQ 589

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            RTLL+V I+      +      +KLMG K D R +FI+E A ++ ++ 
Sbjct: 590 NRTLLKVTIDD----ARAADMLFDKLMGDKVDPRREFIEENAEYVKNLD 634


>gi|212637854|ref|YP_002314374.1| DNA gyrase subunit B [Anoxybacillus flavithermus WK1]
 gi|212559334|gb|ACJ32389.1| DNA gyrase subunit B [Anoxybacillus flavithermus WK1]
          Length = 640

 Score =  645 bits (1663), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/646 (40%), Positives = 379/646 (58%), Gaps = 21/646 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AG+   I V ++ 
Sbjct: 11  YDESQIQVLEGLEAVRKRPGMYIGSTGPKGLHHLVWEIVDNSIDEALAGFCTEINVIVEE 70

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +  +TV+DNGRGIPV  H K   +  +E+I+T LHAGGKF    Y++SGGLHGVG SVVN
Sbjct: 71  DNSITVIDNGRGIPVGIHEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVN 129

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS+EL V V R   I  QK+ RG+P S L+   +  ++ GT I F+PDP+IF +   +D
Sbjct: 130 ALSEELEVYVHRDGNIHYQKYKRGVPCSDLQVVGET-DRTGTTIHFKPDPEIFTETTEYD 188

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L    +  A+L+  ++      +          + E+Y+ GG+ +Y++     +  +
Sbjct: 189 YDTLAHRLRELAFLNKGIRITLEDRRG------ENRRNEYYYEGGISSYVKHLNRTKETL 242

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
             E    + EK G     VE A+ + +     I S+ N I T EGGTHE G + ALTR I
Sbjct: 243 HEEPIYIEGEKDGIQ---VEIALQYNDGYTSNIYSFANNIHTHEGGTHELGFKTALTRII 299

Query: 343 KKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             Y       +    ++  +D+      I+SV    P+F GQTKTKL + DA+   E+  
Sbjct: 300 NDYGRKNNMFKDQDANLTGEDVREGLTAIISVKHPAPQFEGQTKTKLGNSDARTATESIF 359

Query: 401 RDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
            + F+ +L++NP  A K++E  ++        +R +    RK A+    LPGKLADCS  
Sbjct: 360 AEQFEKFLLENPSVAKKIVEKGILASRARLAAKRARELTRRKNALEVSSLPGKLADCSSR 419

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
                EL++VEGDSAGGSAKQ R+R  QA+LPLRGKI+NV  +  +KI +N ++  ++ A
Sbjct: 420 DPAICELYVVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEKSRLDKILSNNEVRAIITA 479

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           LG      +     RY K+IIMTDADVDGAHI +LLLTFFY+ M ++IEQ ++++  PPL
Sbjct: 480 LGTGIGEDFDITKARYHKIIIMTDADVDGAHIRTLLLTFFYRYMREVIEQGYVYIAQPPL 539

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           ++I QG +  YA+ +   ++IL    +    K  I R+KGLGEM   QL ET M+   RT
Sbjct: 540 YKIQQGKRIEYAYSDRQLEEILTRLPEQ--PKPVIQRYKGLGEMNPEQLWETTMNPETRT 597

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           LL+V +   +    +  ++   LMG K + R +FI+E A ++ ++ 
Sbjct: 598 LLKVSLQDAM----EADETFEILMGDKVEPRRQFIEENAKYVKNLD 639


>gi|288554611|ref|YP_003426546.1| DNA gyrase subunit B [Bacillus pseudofirmus OF4]
 gi|288545771|gb|ADC49654.1| DNA gyrase subunit B [Bacillus pseudofirmus OF4]
          Length = 646

 Score =  645 bits (1663), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/656 (39%), Positives = 392/656 (59%), Gaps = 21/656 (3%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
                S   +YD S I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AG+
Sbjct: 7   TNEQHSEQQSYDESQIQVLEGLEAVRKRPGMYIGSTSGRGLHHLVWEIVDNSIDEAMAGH 66

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
            + I+V+++ +  +TV DNGRGIPV  H K   +  +E+I+T LHAGGKF    Y++SGG
Sbjct: 67  CDTIQVTIEEDNSITVEDNGRGIPVGIHEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGG 125

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG SVVNALS +L V V R+N ++ Q++ RG+P + L    +    RGT I F+PDP
Sbjct: 126 LHGVGASVVNALSTKLEVEVHRENQVYYQEYHRGVPAADLAVIGETEK-RGTIIRFKPDP 184

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IF +   ++   L    +  A+L+  +    +  +E        +   +++ GG+ +++
Sbjct: 185 EIFTETTEYEYDILATRLRELAFLNKGLTITITDKRE------ENKSSTYFYEGGIASFV 238

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +    ++ ++  E    + EK G     VE A+ + +     I S+ N I T EGGTHES
Sbjct: 239 EHLNRSKEVLHDEPIHIEAEKDG---LNVEVAVQYNDGYVSNIYSFANNISTHEGGTHES 295

Query: 333 GLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G +  LTR I  YA      +    ++  +D+      I+SV I +P+F GQTKTKL + 
Sbjct: 296 GFKTGLTRVINDYARKHNLFKENDPNLTGEDVREGLTAIISVKIPDPQFEGQTKTKLGNS 355

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           +A+   ++   + F  +++++P    K++E  +  S  R   +K RE   RK+A+    L
Sbjct: 356 EARTVTDSLFSEAFSRFMIEHPQVGKKIVEKGLMASRAREAAKKARELTRRKSALEVSSL 415

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADCS   A  +E++IVEGDSAGGSAKQ R+R  QA+LPLRGKI+NV  A  +KI  
Sbjct: 416 PGKLADCSSKDATISEIYIVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEKARLDKILA 475

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N +I  ++ ALG      +  E  RY K+IIMTDADVDGAHI +L+LTFFY+ M  LIE+
Sbjct: 476 NNEIRAIITALGTGIGDDFDIEKARYHKIIIMTDADVDGAHIRTLILTFFYRYMRPLIEK 535

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
            ++++  PPL+++TQG    YA++++   +I+ ++ +  + K+ I R+KGLGEM  +QL 
Sbjct: 536 GYIYIAQPPLYKVTQGRDLQYAYNDKELDQIMSQYTE--RNKVGIQRYKGLGEMNPTQLW 593

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           ET MD   RT+L+V +   +       +    LMG + + R  FI E A ++ ++ 
Sbjct: 594 ETTMDPEYRTVLQVTLEDAMK----ADEIFEILMGDRVEPRRDFIHENAQYVKNLD 645


>gi|227821835|ref|YP_002825805.1| DNA topoisomerase IV subunit B [Sinorhizobium fredii NGR234]
 gi|227340834|gb|ACP25052.1| DNA gyrase subunit B [Sinorhizobium fredii NGR234]
          Length = 685

 Score =  645 bits (1663), Expect = 0.0,   Method: Composition-based stats.
 Identities = 445/687 (64%), Positives = 541/687 (78%), Gaps = 8/687 (1%)

Query: 3   DDSIDLFSTLP--PQSQGSSEKLKKSGEIPDSPAFANQ-SASDNYDASSIRILEGLEPVR 59
           DDS DLFS +P  P+   +  K        D+P    + S   +YDAS+I +LEGLEPVR
Sbjct: 2   DDSSDLFSAMPLQPKPADAPRKPTAPAAGSDAPRPTPKGSDGSDYDASAIEVLEGLEPVR 61

Query: 60  MRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119
            RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+AN IEV LD  GFLTV DNGRGIPVE
Sbjct: 62  RRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHANFIEVYLDAEGFLTVTDNGRGIPVE 121

Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179
           NHPKFPNKSTLE+++T LHAGGKFD   YE SGGLHGVG+SVVNALSD + V VAR   +
Sbjct: 122 NHPKFPNKSTLEVVMTVLHAGGKFDGKAYETSGGLHGVGVSVVNALSDSVEVEVARNRKL 181

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
           + Q+FSRGIP   LE+  +V N+RGT++ F PDP+IFG  A F+ ARL +M +SKAYL G
Sbjct: 182 YRQRFSRGIPQGGLEELGEVHNRRGTKVRFHPDPQIFGPHARFEPARLFRMARSKAYLFG 241

Query: 240 RVKTCWSCDKE-IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH 298
            V+  WSCD   + E    PEK  F+FPGGLK YL   L     ++ EIF GK+EK G H
Sbjct: 242 GVEIRWSCDPSLLPEGSETPEKAVFHFPGGLKDYLAATLGKEFTVTREIFAGKSEKSGGH 301

Query: 299 RGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII 358
            G++EWA+ W   + +I SYCNTI T EGGTHE+GLR+ALT+G+K YAELTQNKRA  + 
Sbjct: 302 -GSLEWAVTWYGGDQQIHSYCNTIPTPEGGTHEAGLRIALTKGLKNYAELTQNKRAAIVT 360

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
           +DD+MISA G+LSVFIREPEF GQTK KL +++AQR VENALRDPFDHYL  NP EA KL
Sbjct: 361 TDDVMISAAGMLSVFIREPEFVGQTKDKLATVEAQRIVENALRDPFDHYLADNPGEAAKL 420

Query: 419 LEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
           L+WVIER+EER+RRRK++EVNRKTA+RKLRLPGKLADC+QN A G ELFIVEGDSAGGSA
Sbjct: 421 LDWVIERAEERVRRRKEKEVNRKTAVRKLRLPGKLADCAQNTAEGAELFIVEGDSAGGSA 480

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538
           KQARNR+NQA+LPLRGKILNVASAG EK+  NQQI DLVQALGC TRS+YREEDLRYE+V
Sbjct: 481 KQARNRANQAILPLRGKILNVASAGREKLGANQQITDLVQALGCGTRSKYREEDLRYERV 540

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQ 598
           IIMTDADVDGAHIASLL+TFFYQEM +LI   HL+L  PPL+R++QG+++ YA D+ H++
Sbjct: 541 IIMTDADVDGAHIASLLITFFYQEMPELIRGGHLYLAVPPLYRLSQGSRTFYARDDAHRE 600

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           +++   + +G+GK+EI RFKGLGEML +QLKET MD   RTLL+VEI+      + T+++
Sbjct: 601 ELM-RTEFNGRGKVEIGRFKGLGEMLPAQLKETTMDPANRTLLKVEIDDV--DFEGTREA 657

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
           ++ LMGTKAD RF+FIQERA F++++ 
Sbjct: 658 VDNLMGTKADARFRFIQERAVFVENLD 684


>gi|15893304|ref|NP_346653.1| DNA gyrase subunit B [Clostridium acetobutylicum ATCC 824]
 gi|18273027|sp|P94604|GYRB_CLOAB RecName: Full=DNA gyrase subunit B
 gi|15022823|gb|AAK77993.1|AE007513_6 DNA gyrase (topoisomerase II) B subunit [Clostridium acetobutylicum
           ATCC 824]
 gi|325507413|gb|ADZ19049.1| DNA gyrase subunit B [Clostridium acetobutylicum EA 2018]
          Length = 637

 Score =  644 bits (1662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/652 (39%), Positives = 385/652 (59%), Gaps = 21/652 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
              ++ YD S I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AGY + I
Sbjct: 2   SEKNEIYDESQIQVLEGLEAVRKRPGMYIGSTGTRGLHHLVYEIVDNSIDEALAGYCSHI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V +  +  +TV D+GRG+P+  H K   K T+E+I+T LHAGGKF    Y +SGGLHGV
Sbjct: 62  KVFIHKDNSVTVSDDGRGMPIGIHHKM-KKPTVEVIMTILHAGGKFGGGAYRVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS+   V V  +  I+ Q + RG   SP EK     ++ GT+I F+PDP+IF 
Sbjct: 121 GASVVNALSETCEVEVKTEGHIWKQTYHRGKVASPFEKIGD-SDEHGTKIYFKPDPEIFE 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           D   +D   L +  +  A+L+  +K   + ++         + E F++ GGLK+++    
Sbjct: 180 DT-EYDYDTLSQRLRELAFLNKGIKIELTDERH-------DKNEIFHYEGGLKSFVSYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N+ ++  E    +      +  +VE A+ + +     I S+ N I T EGGTH +G + 
Sbjct: 232 RNKEVVFKEPIYVEGSIDSNY--SVEIALQYNDGYNENIFSFANNIHTIEGGTHLAGFKT 289

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA+      +   ++  +D+      ++SV + EP+F GQTKTKL + + + 
Sbjct: 290 ALTRVINDYAKKFGYLKENDKNLSGEDIREGLTAVVSVKLTEPQFEGQTKTKLGNTEVRG 349

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKL 453
            V++ + +    YL +NP     +++  +  S  R   +K RE+ R+ + +    LPGKL
Sbjct: 350 IVDSIISERVSTYLEENPQIGKLVIDKALVASRAREAAKKAREITRRKSVLESTSLPGKL 409

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS   A   E++IVEGDSAGGSAKQ RNR  QA+LPLRGKI+NV     +KI N+++I
Sbjct: 410 ADCSSKDAEECEIYIVEGDSAGGSAKQGRNRRFQAILPLRGKIMNVEKQRIDKILNSEEI 469

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             +  A G      +    LRY K+IIMTDADVDGAHI +L+LTFFY+ M +LI + H+F
Sbjct: 470 KAMATAFGGGIGKDFDVSKLRYHKIIIMTDADVDGAHIRTLILTFFYRYMTELISEGHVF 529

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           +  PPL+++T+  K  YA+ ++  + +L++     K   +I R+KGLGEM   QL ET M
Sbjct: 530 IAQPPLYKVTKTRKEYYAYSDKELEDVLQDVGGKDKNT-DIQRYKGLGEMNPEQLWETTM 588

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +  +RTL++V I   +       +    LMG K D R KFI+E A+ + ++ 
Sbjct: 589 NPEQRTLIKVNIEDAM----AADEIFTILMGDKVDPRRKFIEENATKVVNLD 636


>gi|114565581|ref|YP_752735.1| DNA topoisomerase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114336516|gb|ABI67364.1| DNA gyrase subunit B [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 633

 Score =  644 bits (1662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/649 (39%), Positives = 379/649 (58%), Gaps = 23/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
              Y+AS I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AG+   IEV+
Sbjct: 3   EREYNASDIQVLEGLEAVRKRPGMYIGSTGPKGLHHLVFEIVDNSIDEAVAGFCKKIEVT 62

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TV D+GRGIPV+ HP       L++ILTTLH+GGKF  S Y ISGGLHGVG+S
Sbjct: 63  INQDNSITVCDDGRGIPVDIHPAM-GIPALQVILTTLHSGGKFGGSGYNISGGLHGVGLS 121

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  + V V R   I+ Q + RG P++ +    + +   GT I F  D +IF +  
Sbjct: 122 VVNALSRRMEVRVKRDGHIYQQDYERGNPVNEIRIIGESKE-TGTSICFFADDEIFEEIN 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F+   LL+  +  ++L+  +K     ++E          +EF++  GLK ++    +N+
Sbjct: 181 -FEREILLQRLRELSFLNRNLKISLRDEREE-----EVFYQEFHYSHGLKDFVAYINKNK 234

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALT 339
            +I+      + +K       V+ AI +     E    + N I T EGGTHE G + ALT
Sbjct: 235 EVINDNPIYFENKKDDVI---VQVAIQYNNSYSENLYSFANNIRTQEGGTHEIGFKNALT 291

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA+      +   ++  +D+      I+SV +++P+F GQTKTKL +   +  VE
Sbjct: 292 RVINDYAKKNNILKENDNNLSGEDIREGIAAIISVLVKDPQFEGQTKTKLGNTYIRGIVE 351

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
           + + +  + YL +NP  A KLL+  I     R   +K RE   RK A+    LPGKLADC
Sbjct: 352 SIVFEHVEDYLNENPAAARKLLDKAISARRAREAAKKARELTRRKNALESTALPGKLADC 411

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +ELFIVEGDSAGGSAKQ R+R+ QA+LPLRGKILNV  A  +++ ++++I +L
Sbjct: 412 SNKNPAESELFIVEGDSAGGSAKQGRDRTYQAILPLRGKILNVEKARLDRVLSSEEIRNL 471

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  +  RY K+ IMTDADVDG+HI  LLLTFFY+ M +LIE+ +L++  
Sbjct: 472 ITAMGTGIGEDFDIKKARYHKLFIMTDADVDGSHIRVLLLTFFYRYMKELIEEGYLYIAQ 531

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+ + +G +  Y +++      L + ++    K  I R+KGLGEM   QL  T MDA 
Sbjct: 532 PPLYGLKRGKEIKYFYNDADLNAFLSQTEQ----KWSIQRYKGLGEMDPEQLWTTTMDAE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            RT+L+V I   +       D  + LMG     R +FI+  A ++ ++ 
Sbjct: 588 SRTVLKVTIEDAIK----ANDIFSALMGDNVQPRREFIESNARYVANLD 632


>gi|311032261|ref|ZP_07710351.1| DNA gyrase subunit B [Bacillus sp. m3-13]
          Length = 636

 Score =  644 bits (1662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/649 (40%), Positives = 387/649 (59%), Gaps = 20/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            ++YD S+I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I V 
Sbjct: 3   ENSYDESNIQVLEGLEAVRKRPGMYIGSTSAKGLHHLVWEIVDNSIDEALAGYCSEINVI 62

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TV DNGRGIPV  H K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 63  VEKDNSITVKDNGRGIPVGIHEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 121

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL + V R   I  Q+F++G+P   L+   +  +  GT I F PD +IF +  
Sbjct: 122 VVNALSSELKIYVHRDGKIHYQQFNKGVPNEDLKIIGET-DVTGTIIHFVPDEEIFTETK 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +D   L    +  A+L+  ++      +E       P+K E+++ GG+ +Y++     +
Sbjct: 181 EYDYDTLAHRLRELAFLNKGIRITIEDKREE-----TPKKNEYHYEGGIASYVEHLNRTK 235

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALT 339
            +I  E+   + EK G    ++E A+ + +        + N I T EGGTHESG + ALT
Sbjct: 236 EVIHEEVVFVEGEKDGI---SIEVALQYNDSYTSNLYSFANNISTYEGGTHESGFKTALT 292

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA      +    ++  +D+      I+S+   +P+F GQTKTKL + +A+   +
Sbjct: 293 RVINDYARKNNIFKDADSNLTGEDVREGLTAIVSIKHPDPQFEGQTKTKLGNSEARTVTD 352

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K++E  +  S  R+  +K RE   RK+A+    LPGKLADC
Sbjct: 353 SVFTEKFEGFLLENPSAARKIVEKGLMASRARMAAKKARELTRRKSALEISSLPGKLADC 412

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E+++VEGDSAGGSAKQ R+R  QA+LPLRGKI+NV  A  +KI +N ++  +
Sbjct: 413 SSKDPSISEIYVVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEKARLDKILSNNEVRAI 472

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + ALG      +     RY K++IMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 473 ITALGTGIGEDFDISRARYHKIVIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQ 532

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL++I QG K  YA+++   ++IL       K    I R+KGLGEM   QL ET MD  
Sbjct: 533 PPLYKIQQGKKIEYAYNDRQLEEILATMSDQPKAG--IQRYKGLGEMNPEQLWETTMDPV 590

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            RTLL+V +   +    +  ++   LMG K + R  FIQ+ A ++ ++ 
Sbjct: 591 SRTLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQDNARYVKNLD 635


>gi|323703937|ref|ZP_08115567.1| DNA gyrase, B subunit [Desulfotomaculum nigrificans DSM 574]
 gi|323531095|gb|EGB21004.1| DNA gyrase, B subunit [Desulfotomaculum nigrificans DSM 574]
          Length = 636

 Score =  644 bits (1661), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/648 (41%), Positives = 394/648 (60%), Gaps = 22/648 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + Y A  I++LEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AG+ N I V +
Sbjct: 6   NKYSADQIQVLEGLEAVRRRPGMYIGSTSSRGLHHLVYEVVDNSIDEALAGFCNRISVVI 65

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  +TV DNGRGIPV+ HPK   K  +E++LT LHAGGKF    Y++SGGLHGVG+SV
Sbjct: 66  HKDNSVTVEDNGRGIPVDLHPKV-GKPAVEVVLTMLHAGGKFGGGGYKVSGGLHGVGVSV 124

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS++L V + R   I+ Q +SRG+P+S L+   K ++  GT++TF+PDP+IF +   
Sbjct: 125 VNALSEKLEVEIKRNGNIYHQAYSRGVPVSELKIIGKSKS-TGTKVTFKPDPEIFEETT- 182

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F    L++  +  AYL+  VK     +++       P ++ F F GG++ +++    N+ 
Sbjct: 183 FSLETLVQRLRELAYLNKGVKITIKDERKD-----PPVEQTFQFDGGIRDFVKHLNRNKQ 237

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
           ++ S+      EK+   +  VE A+ + +     I S+ N I T +GGTHE G + ALTR
Sbjct: 238 VLHSKPIYVTGEKE---QIIVEIALQYNDTYNENILSFANNIHTVDGGTHEIGFKTALTR 294

Query: 341 GIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +  Y       +    ++  +D+   A  ++SV +REP+F GQTKTKL + + +  V++
Sbjct: 295 VVNDYGRNHNLLKNSDPNLSGEDIREGATVVISVKVREPQFEGQTKTKLGNSEVRGIVDS 354

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
              D    YL +NP    +++E  I  +  R   RK RE   RK+A+  + LPGKLADCS
Sbjct: 355 IFADGLATYLEENPTVGKRIIEKAITAARAREAARKARELTRRKSALDTMSLPGKLADCS 414

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           +     +EL++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI  N++I  ++
Sbjct: 415 EKDPSVSELYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARMDKILANEEIRAMI 474

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALGC     +     RY K+IIMTDADVDGAHI +LLLTFFY+ M  LIE  ++++  P
Sbjct: 475 TALGCGIGQDFDISKARYHKIIIMTDADVDGAHIRTLLLTFFYRHMRPLIEAGYVYIAQP 534

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PLFR+ +G    Y + +   +++L+         + I R+KGLGEM   QL ET MD + 
Sbjct: 535 PLFRVRKGKLDSYVYSDHELEELLKRVGYDN---VNIQRYKGLGEMNPEQLWETTMDPDT 591

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           RT+L+V +   +    +   + + LMG + + R  FIQE A ++ ++ 
Sbjct: 592 RTVLQVTLEDAI----EADATFSMLMGDRVEPRRDFIQENAQYVRNLD 635


>gi|269791748|ref|YP_003316652.1| DNA gyrase, B subunit [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099383|gb|ACZ18370.1| DNA gyrase, B subunit [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 636

 Score =  644 bits (1661), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/648 (39%), Positives = 372/648 (57%), Gaps = 22/648 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y A  I++LEGL  VR RPGMYIG   ++ LHHL  EV+DNA+DE +AG+ + ++V++
Sbjct: 6   SQYTAKDIQVLEGLSAVRKRPGMYIGDQGQRGLHHLVYEVVDNAIDEAMAGFCDTVQVTV 65

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G ++V DNGRGIP E HP    +   E++LT LHAG KFD   Y++SGGLHGVG+SV
Sbjct: 66  HPDGSVSVEDNGRGIPTEMHPTM-GRPAAEVVLTVLHAGAKFDKKAYQVSGGLHGVGVSV 124

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+ L VT+ R      Q + RG+P++ L    +  ++RGT++ F PD +IF     
Sbjct: 125 VNALSEWLEVTIWRNGKEHRQSYRRGVPVTDL-IAGEDTDRRGTKVHFMPDGEIFSTL-E 182

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F A  L+   +  A+L+  V   +   +        P + + +F GG++++++     + 
Sbjct: 183 FSADTLIGRLRELAFLNPGVTIVFRDLR-----QDPPMERKLHFEGGIRSFVEYLNRGKE 237

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
           ++ S     K EK G     VE A+ + +     I ++ N I T EGGTH SG R ALTR
Sbjct: 238 VLFSPPMVVKGEKDGVI---VEVALQYNDTYLERIFAFANLINTVEGGTHVSGFRTALTR 294

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I   A   +    +  +   DDL      ++SV + EP+F GQTKTKL + D +  V++
Sbjct: 295 LINDQARKEKLLKDKDPNFTGDDLKEGLTAVISVKLLEPQFEGQTKTKLGNGDVKGIVDS 354

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            + +     L   P     ++E  ++  + R   +K R+ V RK+A+  + LPGKLADCS
Sbjct: 355 VVYEGLKVILEDQPQILRPVVEKAVKARQAREAAKKARDLVRRKSAMSGMDLPGKLADCS 414

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                  EL+IVEGDSAGGSAK  R+RS QA+LPLRGKILNV  A  +KI +N Q+  ++
Sbjct: 415 NRRPEECELYIVEGDSAGGSAKMGRDRSFQAILPLRGKILNVEKARLDKILSNDQVRTII 474

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
           QALGC    ++    LRY K+ +M DADVDGAHI +LLLT F++ M  +IE  HL++  P
Sbjct: 475 QALGCGVGDEFDYSKLRYHKIFLMADADVDGAHIRTLLLTLFFRYMPQIIENGHLYVAQP 534

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+R+ +G    Y + +   ++I++        K  + R+KGLGEM   QL ET MD   
Sbjct: 535 PLYRVQEGKNVHYCYSDRELKEIMQRL---SGRKASVQRYKGLGEMNPEQLWETTMDPAN 591

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           R + RVEI   +       +  + LMG   + R +FI+  A  + ++ 
Sbjct: 592 RVIKRVEIEDAV----LADELFSVLMGDAVEPRREFIEAHAKEVRNLD 635


>gi|228474124|ref|ZP_04058865.1| DNA gyrase, B subunit [Capnocytophaga gingivalis ATCC 33624]
 gi|228274638|gb|EEK13479.1| DNA gyrase, B subunit [Capnocytophaga gingivalis ATCC 33624]
          Length = 656

 Score =  644 bits (1661), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/667 (39%), Positives = 386/667 (57%), Gaps = 26/667 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + Q   + Y A +I+ LEG+E VR+RP MYIG    + LHHL  EV+DN++DE +AGY 
Sbjct: 1   MSEQLDPNKYSADNIQSLEGMEHVRVRPSMYIGDVGVRGLHHLVYEVLDNSIDEALAGYC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I V ++ +  +TV DNGRGIPV+ H K    S LE+++T + AGGKFD  +Y++SGGL
Sbjct: 61  DTISVVINPDNSVTVEDNGRGIPVDIHKK-EGVSALEVVMTKIGAGGKFDKGSYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVV+ALS  L  TV R   I+ Q++ RGI L  +++K K    RGT++TF PD +
Sbjct: 120 HGVGVSVVDALSTHLTATVFRDGKIWEQEYERGIALYQVKEKGKTEK-RGTKVTFLPDTE 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     F+   L    +  A+L+  +    +  +   EK   P  + FY   GL+ ++Q
Sbjct: 179 IFQQTVEFNYDILANRIRELAFLNKGIHITLTDLRHQDEKG-APISQTFYSEKGLEEFIQ 237

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333
               NR+ I  +I   + EK       VE A+ + +   E    Y N I T EGGTH  G
Sbjct: 238 YLDGNRTPIIKKIIAMEGEKNEIP---VEVAMIYNDSFNENLHSYVNNINTHEGGTHLQG 294

Query: 334 LRVALTRGIKKYAELTQ--------NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
            R+ LTR +K YA+ +          K  + I  DD       I+SV + EP+F GQTKT
Sbjct: 295 FRMGLTRTLKNYADKSGLLEKASKDKKNPLEISGDDFREGLTAIISVKVAEPQFEGQTKT 354

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-I 444
           KL + +    V  A+ D  + YL +NP +A  ++  VI  ++ RL  +K RE  ++ + +
Sbjct: 355 KLGNREVTAAVSQAVSDMLESYLEENPEDAKTIVNKVILAAQARLAAKKAREAVQRKSPM 414

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LP KLADC        ELF+VEGDSAGG+AKQ R++  QA+LPLRGKILNV  A  
Sbjct: 415 GGAGLPNKLADCQDKNPENCELFLVEGDSAGGTAKQGRDQKFQAILPLRGKILNVEKAMQ 474

Query: 505 EKIRNNQQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
            ++  N++I ++  ALG    ++          LRY K+IIM+DADVDG+HIA+L+LTFF
Sbjct: 475 HRVFENEEIKNIYTALGVTIGTEEDAKALNISKLRYHKIIIMSDADVDGSHIATLILTFF 534

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
           ++ M +LIE+ H+++ +PPL+ + QG K  YA  +E +  I +EF +  + K+ + R+KG
Sbjct: 535 FRYMRELIEEGHVYIATPPLYLLKQGKKEQYAWSDEERDAITKEFYEQAQTKVAVQRYKG 594

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679
           LGEM A QL +T MD   RTL +V I   +    +     + LMG     R +FI++ A 
Sbjct: 595 LGEMNAEQLADTTMDPRHRTLRKVTIENAV----EADRIFSMLMGDDVPPRREFIEKNAK 650

Query: 680 FIDDVGT 686
           +  ++  
Sbjct: 651 YA-NIDA 656


>gi|254711140|ref|ZP_05172951.1| DNA topoisomerase IV subunit B [Brucella pinnipedialis B2/94]
 gi|256029521|ref|ZP_05443135.1| DNA topoisomerase IV subunit B [Brucella pinnipedialis M292/94/1]
 gi|261318731|ref|ZP_05957928.1| DNA topoisomerase IV subunit B [Brucella pinnipedialis B2/94]
 gi|265986529|ref|ZP_06099086.1| DNA topoisomerase IV subunit B [Brucella pinnipedialis M292/94/1]
 gi|261297954|gb|EEY01451.1| DNA topoisomerase IV subunit B [Brucella pinnipedialis B2/94]
 gi|264658726|gb|EEZ28987.1| DNA topoisomerase IV subunit B [Brucella pinnipedialis M292/94/1]
          Length = 699

 Score =  644 bits (1661), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/701 (60%), Positives = 534/701 (76%), Gaps = 22/701 (3%)

Query: 3   DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSP-----------------AFANQSASDNYD 45
           DDS DLFS +   ++    + +        P                 A    S  D+Y+
Sbjct: 2   DDSNDLFSRVVNNARERQMERQTGENTVAQPVVQPAPSAPKPVPAAAKAPPAASGGDDYN 61

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNG 105
           ASSIR+LEGLEPVR+RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+AN IEV++D  G
Sbjct: 62  ASSIRVLEGLEPVRLRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHANFIEVTVDKEG 121

Query: 106 FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNAL 165
           F+TV DNGRGIPV+ HP+ P KSTLE+I+T LHAGGKFD   YE SGGLHGVG+SVVNAL
Sbjct: 122 FVTVSDNGRGIPVDEHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVSVVNAL 181

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225
           SD L V VAR   ++ Q FSRGIP   LE+  +V N+RGTR+ F PDP+IFG  A FD  
Sbjct: 182 SDVLEVEVARNRRLYRQCFSRGIPQGGLEELGEVHNRRGTRVRFHPDPEIFGKNAHFDPH 241

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
           RL +M +SKAYL G V+  W+CD  + + K   PEK  F+FPGGLK YL+  L  +  ++
Sbjct: 242 RLYRMARSKAYLFGGVEIRWNCDPSLLDPKKETPEKAVFHFPGGLKDYLEASLGKKHQVT 301

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKK 344
            E+F G+TEK+G H G VEWA+AW   +  + SYCNTI T +GGTHE+GLR+ALTRG+K 
Sbjct: 302 REVFAGRTEKQGGH-GAVEWAVAWFGGDGFVHSYCNTIPTGDGGTHEAGLRIALTRGLKA 360

Query: 345 YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF 404
           YAELT NKRA  I +DD+M+SA G+LSVFIREPEF GQTK KL +++AQR VENA+RDPF
Sbjct: 361 YAELTNNKRASIITTDDVMVSAAGMLSVFIREPEFVGQTKDKLATVEAQRLVENAIRDPF 420

Query: 405 DHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGT 464
           DH+L  +P EA++LLEWVI+R++ERLRRR+++E  RK+A RKLRLPGKLADC+QN A G 
Sbjct: 421 DHWLAASPQEASRLLEWVIDRADERLRRRQEKETVRKSATRKLRLPGKLADCTQNAAAGA 480

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           ELFIVEGDSAGGSAKQARNR+NQA+LPLRGKILNVASAG EK+  NQQI DLVQALGC T
Sbjct: 481 ELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLTANQQIADLVQALGCGT 540

Query: 525 RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ 584
           R  YRE+DLRY++VI+MTDADVDGAHIASLL+TFFYQEM +LI   HL+L  PPL+R++Q
Sbjct: 541 RKNYREDDLRYDRVIVMTDADVDGAHIASLLITFFYQEMPELIRNGHLYLAVPPLYRLSQ 600

Query: 585 GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644
           G K+ YA D+ HK+++L      G+GKIEI RFKGLGEM A QLKET MD  KRTLLRV+
Sbjct: 601 GGKTAYARDDAHKEELLRTVF-TGRGKIEIGRFKGLGEMRADQLKETTMDPAKRTLLRVQ 659

Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           ++++     +T+++++ LMGTK + RF+FIQ+RA+F++++ 
Sbjct: 660 VDEEYGD--ETRNTVDDLMGTKPEARFRFIQDRAAFVEELD 698


>gi|313902779|ref|ZP_07836176.1| DNA gyrase subunit B [Thermaerobacter subterraneus DSM 13965]
 gi|313466899|gb|EFR62416.1| DNA gyrase subunit B [Thermaerobacter subterraneus DSM 13965]
          Length = 635

 Score =  644 bits (1660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/648 (40%), Positives = 371/648 (57%), Gaps = 25/648 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YD S I++LEGLE VR RPGMYIG T  + LHHL  EV+DNA+DE +AG    I V+L  
Sbjct: 6   YDESQIQVLEGLEAVRRRPGMYIGSTGPRGLHHLIWEVVDNAVDEALAGRCTAITVTLHA 65

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G  +V DNG GIPV  HPK   K T+E++LT LHAGGKFD   Y++SGGLHGVG+SVVN
Sbjct: 66  DGSCSVRDNGGGIPVGIHPKV-GKPTVEVVLTMLHAGGKFDGQAYKVSGGLHGVGVSVVN 124

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAGF 222
           ALS+ L V V R+  I  Q++ RG P + LE       +  GT + F+PDP+IF +   F
Sbjct: 125 ALSEWLEVEVRREGRIHRQRYRRGQPETGLEVVGTTAADDTGTYVRFKPDPEIFEET-EF 183

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               ++   +  A L+  +      ++         E+  F F GGL++++      +  
Sbjct: 184 KYDVVVGRLREIALLNSGLYIELRDER-------TGERNLFQFMGGLRSFVALLNRTKEA 236

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +  E  + K E+ G     VE A+ W       + S+ NTI T EGGTHE+G ++ALTR 
Sbjct: 237 LHPEPISYKAERDGV---EVEMALQWTTSYVETLYSFANTIHTHEGGTHEAGFKMALTRV 293

Query: 342 IKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +  YA      +    ++  DD+      +LSV + EP+F GQTKTKL + + +  V++ 
Sbjct: 294 VNDYARKANLLKNGDENLAGDDIREGLTAVLSVKLPEPQFEGQTKTKLGNSEVRGVVDSV 353

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
             +    Y  +NP  A +++E  I     R   RK RE   RK+A+    LPGKL DC+ 
Sbjct: 354 TGEALATYFEENPQVARRVVEKAITAMRAREAARKARELTRRKSALEVTALPGKLTDCTV 413

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 ELFIVEGDSAGGSAKQ R+R  QAVLPLRGKILNV  A  +KI  + +I  L+ 
Sbjct: 414 RDPAMAELFIVEGDSAGGSAKQGRDRRFQAVLPLRGKILNVEKARLDKILAHDEIRALIT 473

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+G     ++     RY K+I+MTDADVDGAHI +LLLTFF++ M  LIE  ++++  PP
Sbjct: 474 AIGTGIGDEFDIHRARYHKIILMTDADVDGAHIRTLLLTFFFRYMRPLIEAGYVYIAQPP 533

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+ + QG +  Y +D++  +    +  K         RFKGLGEM A QL ET M+   R
Sbjct: 534 LYLVRQGKEEHYFYDDDQLEAFFRQVGKRMPA----QRFKGLGEMNAEQLWETTMNPETR 589

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           TLL+V +   +          + LMG++ + R +FI++ A  +  + T
Sbjct: 590 TLLQVTLEDAM----AADQIFSILMGSRVEPRREFIEQHARKVRFLDT 633


>gi|269925173|ref|YP_003321796.1| DNA gyrase, B subunit [Thermobaculum terrenum ATCC BAA-798]
 gi|269788833|gb|ACZ40974.1| DNA gyrase, B subunit [Thermobaculum terrenum ATCC BAA-798]
          Length = 640

 Score =  644 bits (1660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/653 (39%), Positives = 389/653 (59%), Gaps = 22/653 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +    NY+A SI++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AGY + 
Sbjct: 5   EEKVISNYNAESIQVLEGLEAVRKRPGMYIGSTDVRGLHHLIYEIVDNSVDESMAGYCDF 64

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV +  +  +TV DNGRGIPV  HPK   KS LE+++T LHAGGKF +  Y++SGGLHG
Sbjct: 65  IEVHIHKDKSVTVRDNGRGIPVGIHPKL-KKSALEVVMTVLHAGGKFGSGGYKVSGGLHG 123

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS+ L   V R+  I+ Q + RG+P +P+E      ++ GT ITF+PD  +F
Sbjct: 124 VGASVVNALSEYLIAEVHREGKIWRQSYERGVPKTPVEAIGDT-DRTGTIITFKPDADLF 182

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                +    L +  +  AYL+  +K  +  D++  E          YF GG+ ++++  
Sbjct: 183 STL-EYQFDTLAQRFREIAYLNKGLKITFIDDRDDKELT-------LYFEGGIASFVRHL 234

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLR 335
            +NR++++ +      +  G     VE AI + +  N  + ++ N I T +GGTH +G R
Sbjct: 235 NKNRNVLTEKPIYIHKQLNGI---DVEVAIQYTDGFNESLHTFTNNINTVDGGTHLTGFR 291

Query: 336 VALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR +  YA      +     +  +D+      ++SV + +P+F GQTK+KL S +A+
Sbjct: 292 TALTRTLNDYAVKNGLLKDSDTKLTGEDVREGLTAVVSVKLPDPQFEGQTKSKLGSSEAE 351

Query: 394 RTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
           R V + +RD    Y  +NP +A +++ + +         R+ +  V RK A+  + LPGK
Sbjct: 352 RVVASVVRDGLLSYFDENPSDAKRIIEKAITAARAREAARKARDLVVRKGALDGMTLPGK 411

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS+     +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +K+ ++ +
Sbjct: 412 LADCSERDPRHSELYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKMLSSAE 471

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  L+ ALG      +    LRY ++ +MTDADVDGAHI +LLLTFF++ M D+I+  HL
Sbjct: 472 IKALITALGTGIGDSFDISKLRYHRIFLMTDADVDGAHIRTLLLTFFFRHMPDIIKNGHL 531

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL++I  G +  + + +E + ++L     + + K  I R+KGLGEM   QL ET 
Sbjct: 532 YIAMPPLYKIQVGKEKYFVYSDEERDRVLAGLNGN-RSKAIIQRYKGLGEMNPEQLWETT 590

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           MD + RT+++V I   +       +  + LMG+    R KFIQ  A  + ++ 
Sbjct: 591 MDPSTRTIMQVTIEDAVK----ADELFDMLMGSNVAPRKKFIQSHAKSVRNLD 639


>gi|110633369|ref|YP_673577.1| DNA topoisomerase IV subunit B [Mesorhizobium sp. BNC1]
 gi|110284353|gb|ABG62412.1| DNA topoisomerase IV subunit B [Chelativorans sp. BNC1]
          Length = 683

 Score =  644 bits (1660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/686 (60%), Positives = 519/686 (75%), Gaps = 8/686 (1%)

Query: 3   DDSIDLFSTLPPQSQGSSEKLKKSGEIPDS--PAFANQSASDNYDASSIRILEGLEPVRM 60
           DD+ DLF+TL   S    ++ +       +       + ASD+Y A+ I +LEGLEPVR 
Sbjct: 2   DDTNDLFATLGSSSAERVKQPEPIATARKAQRAPSPARDASDSYSAADIEVLEGLEPVRR 61

Query: 61  RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           RPGMYIGGTD+KALHHLF+EVIDN+MDE +AG+A  I+V L  +GFLTV DNGRGIPV+ 
Sbjct: 62  RPGMYIGGTDDKALHHLFAEVIDNSMDEAVAGHATFIDVELSEDGFLTVTDNGRGIPVDP 121

Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
           HPKF +KS LE+I+TTLH+GGKFD+  YE SGGLHGVG+SVVNALS+ L V VAR   +F
Sbjct: 122 HPKFKDKSALEVIMTTLHSGGKFDSKVYETSGGLHGVGVSVVNALSELLEVEVARGRQLF 181

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
            Q+FSRG PL PLE   +V N+RGTR  F+PDP+IFG  A F+ ARL +MT+SKAYL G 
Sbjct: 182 RQRFSRGKPLGPLESVGEVHNRRGTRTRFKPDPEIFGAGAKFEPARLYRMTRSKAYLFGG 241

Query: 241 VKTCWSCDKE-IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
           V+  W+C    + EK   P+K  F+FPGGLK YL   ++    ++ E+F GKTEK+  H 
Sbjct: 242 VEIRWNCAPSLLKEKDETPDKAVFHFPGGLKDYLSNSIDGEFQVTREVFAGKTEKQSGH- 300

Query: 300 GTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359
           G VEWA+ W   +  + SYCNTI T EGGTHE G R AL RG++ YA+LT NKRA  + +
Sbjct: 301 GAVEWAVTWYGGDAFLNSYCNTIPTPEGGTHEQGFRNALLRGLRGYADLTGNKRASIVTA 360

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           +D+MISA G+LSVF+REPEF GQTK KL +  A R VENA+RDPFDH+L  NP EA+KLL
Sbjct: 361 EDVMISAAGMLSVFVREPEFVGQTKDKLATAAAMRIVENAVRDPFDHWLADNPAEASKLL 420

Query: 420 EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +WVI R++ERL+RR+++EV+RK+A+RKLRLPGKLADC+   A G E+FIVEGDSAGGSAK
Sbjct: 421 DWVIARADERLKRRQEKEVSRKSAVRKLRLPGKLADCTVGAAAGAEIFIVEGDSAGGSAK 480

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
           QARNR+ QAVLPLRGKILNVASAGS K+  NQQI DL+QALGC TRS+YREEDLRYE+VI
Sbjct: 481 QARNRATQAVLPLRGKILNVASAGSGKLAANQQITDLIQALGCGTRSKYREEDLRYERVI 540

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599
           IMTDADVDGAHIASLL+TFFYQEM  LI   HLFL  PPL+RI+QG K++YA D+ HK +
Sbjct: 541 IMTDADVDGAHIASLLITFFYQEMPQLITGGHLFLAVPPLYRISQGGKTMYARDDAHKDE 600

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
           +L+  +  G+GK+EI RFKGLGEM+ +QLKET MD   RTLLRVE+     +   T  ++
Sbjct: 601 LLKT-EFTGRGKVEIGRFKGLGEMMPAQLKETTMDPKYRTLLRVEVLDTPEA---TSSAV 656

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
           + LMGTK + RF+FIQE A F++++ 
Sbjct: 657 DALMGTKPEARFRFIQENAEFVEELD 682


>gi|1622792|gb|AAC44498.1| DNA topoisomerase II subunit B [Thermotoga maritima MSB8]
          Length = 636

 Score =  644 bits (1660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/651 (40%), Positives = 380/651 (58%), Gaps = 24/651 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + Y A SI++L+GLEPVRMRPGMYIG T ++ LHHL  EV+DN++DE +AGY + I V+L
Sbjct: 2   EKYSAESIKVLKGLEPVRMRPGMYIGSTGKRGLHHLVYEVVDNSVDEALAGYCDWIRVTL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G + V DNGRGIPV+ HP+   +S LE++ T LHAGGKF   +Y+ISGGLHGVG+SV
Sbjct: 62  HEDGSVEVEDNGRGIPVDIHPE-EGRSALEVVFTVLHAGGKFSKDSYKISGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+ L V V R   I+ Q++ RG P++P+E   +  +K GT + F+PDP IF +   
Sbjct: 121 VNALSEWLEVRVHRDGKIYRQRYERGKPVTPMEVIGET-DKHGTIVRFKPDPLIFSET-E 178

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L    +  A+L   +K  +       +K        F F GG+  Y++     + 
Sbjct: 179 FDPDILEHRLREIAFLVPGLKIEFEDRINGEKKT-------FKFDGGIVEYVKYLNRGKK 231

Query: 282 LISSEIFTGKTEK----KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            +   I   +TEK     G     VE A  + +    +I S+ NTI T +GGTH +  + 
Sbjct: 232 ALHDVIHIKRTEKVKTKNGEDEVIVEIAFQYTDSYSEDIVSFANTIKTVDGGTHVTAFKS 291

Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            LTR + +Y +     K+  S   +D+      ++SV+++ PEF GQTK+KL + + +  
Sbjct: 292 TLTRLMNEYGKKHNFLKKDDSFQGEDVREGLTAVISVYVKNPEFEGQTKSKLGNEEVKEA 351

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLA 454
           V  A+R+        NP     +L  ++   + R   ++ RE+  RK  ++   LPGKLA
Sbjct: 352 VTKAMREELKKIFDANPELVKTILSKIMSTKQAREAAKRAREMVRRKNVLQNTTLPGKLA 411

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS      TELFIVEGDSAGGSAKQAR+R  QAVLP+RGKILNV  +  +++  N+QI 
Sbjct: 412 DCSSTHREKTELFIVEGDSAGGSAKQARDREFQAVLPIRGKILNVEKSSLDRLLKNEQIS 471

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           D++ A+G      + E  LRY ++IIMTDAD+DGAHI +LLLT FY+ M  LIEQ  +++
Sbjct: 472 DIIVAVGTGIGDDFDESKLRYGRIIIMTDADIDGAHIRTLLLTLFYRYMRPLIEQGRVYI 531

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL+RI  G +  Y + ++   +  E+ +     +IEI R+KGLGEM   QL ET M+
Sbjct: 532 ALPPLYRIKAGREEFYVYSDQELAEYKEKLQG---KRIEIQRYKGLGEMNPEQLWETTMN 588

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              R ++RV I       ++       LMG     R +FI+  A  + ++ 
Sbjct: 589 PETRKIIRVTIED----AEEADRLFEILMGNDPSSRREFIERHALKVKELD 635


>gi|23500335|ref|NP_699775.1| DNA topoisomerase IV subunit B [Brucella suis 1330]
 gi|23463950|gb|AAN33780.1| DNA topoisomerase IV, B subunit [Brucella suis 1330]
          Length = 699

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/701 (60%), Positives = 533/701 (76%), Gaps = 22/701 (3%)

Query: 3   DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSP-----------------AFANQSASDNYD 45
           DDS DLFS +   ++    + +        P                 A    S  D+Y+
Sbjct: 2   DDSNDLFSRVVNNARERQMERQTGENTVAQPVVQPAPSAPKPVPAAAKAPPAASGGDDYN 61

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNG 105
           ASSIR+LEGLEPVR+RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+AN IEV++D  G
Sbjct: 62  ASSIRVLEGLEPVRLRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHANFIEVTVDKEG 121

Query: 106 FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNAL 165
           F+TV DNGRGIPV+ HP+ P KSTLE+I+T LHAGGKFD   YE SGGLHGVG+SVVNAL
Sbjct: 122 FVTVSDNGRGIPVDKHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVSVVNAL 181

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225
           SD L V VAR   ++ Q FSRGIP   LE+  +V N+RGTR+ F PDP+IFG  A FD  
Sbjct: 182 SDVLEVEVARNRRLYRQCFSRGIPQGGLEELGEVHNRRGTRVRFHPDPEIFGKNAHFDPH 241

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
           RL +M +SKAYL G V+  W+CD  + + K   PEK  F+FPGGLK YL+  L     ++
Sbjct: 242 RLYRMARSKAYLFGGVEIRWNCDPSLLDPKKETPEKAVFHFPGGLKDYLEASLGKEHQVT 301

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKK 344
            E+F G+TEK+G H G VEWA+AW   +  + SYCNTI T +GGTHE+GLR+ALTRG+K 
Sbjct: 302 REVFAGRTEKQGGH-GAVEWAVAWFGGDGFVHSYCNTIPTGDGGTHEAGLRIALTRGLKA 360

Query: 345 YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF 404
           YAELT NKRA  I +DD+M+SA G+LSVFIREPEF GQTK KL +++AQR VENA+RDPF
Sbjct: 361 YAELTNNKRASIITTDDVMVSAAGMLSVFIREPEFVGQTKDKLATVEAQRLVENAIRDPF 420

Query: 405 DHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGT 464
           DH+L  +P EA++LLEWVI+R++ERLRRR+++E  RK+A RKLRLPGKLADC+QN A G 
Sbjct: 421 DHWLAASPQEASRLLEWVIDRADERLRRRQEKETVRKSATRKLRLPGKLADCTQNAAAGA 480

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           ELFIVEGDSAGGSAKQARNR+NQA+LPLRGKILNVASAG EK+  NQQI DLVQALGC T
Sbjct: 481 ELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLTANQQIADLVQALGCGT 540

Query: 525 RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ 584
           R  YRE+DLRY++VI+MTDADVDGAHIASLL+TFFYQEM +LI   HL+L  PPL+R++Q
Sbjct: 541 RKNYREDDLRYDRVIVMTDADVDGAHIASLLITFFYQEMPELIRNGHLYLAVPPLYRLSQ 600

Query: 585 GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644
           G K+ YA D+ HK+++L      G+GKIEI RFKGLGEM A QLKET MD  KRTLLRV+
Sbjct: 601 GGKTAYARDDAHKEELLRTVF-TGRGKIEIGRFKGLGEMRADQLKETTMDPAKRTLLRVQ 659

Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           ++++     +T+++++ LMGTK + RF+FIQ+RA+F++++ 
Sbjct: 660 VDEEYGD--ETRNTVDDLMGTKPEARFRFIQDRAAFVEELD 698


>gi|15643596|ref|NP_228642.1| DNA gyrase, subunit B [Thermotoga maritima MSB8]
 gi|6831559|sp|P77993|GYRB_THEMA RecName: Full=DNA gyrase subunit B; AltName: Full=Topoisomerase II
           subunit B
 gi|4981365|gb|AAD35915.1|AE001750_9 DNA gyrase, subunit B [Thermotoga maritima MSB8]
          Length = 636

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/651 (40%), Positives = 380/651 (58%), Gaps = 24/651 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + Y A SI++L+GLEPVRMRPGMYIG T ++ LHHL  EV+DN++DE +AGY + I V+L
Sbjct: 2   EKYSAESIKVLKGLEPVRMRPGMYIGSTGKRGLHHLVYEVVDNSVDEALAGYCDWIRVTL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G + V DNGRGIPV+ HP+   +S LE++ T LHAGGKF   +Y+ISGGLHGVG+SV
Sbjct: 62  HEDGSVEVEDNGRGIPVDIHPE-EGRSALEVVFTVLHAGGKFSKDSYKISGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+ L V V R   I+ Q++ RG P++P+E   +  +K GT + F+PDP IF +   
Sbjct: 121 VNALSEWLEVRVHRDGKIYRQRYERGKPVTPVEVIGET-DKHGTIVRFKPDPLIFSET-E 178

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L    +  A+L   +K  +       +K        F F GG+  Y++     + 
Sbjct: 179 FDPDILEHRLREIAFLVPGLKIEFEDRINGEKKT-------FKFDGGIVEYVKYLNRGKK 231

Query: 282 LISSEIFTGKTEK----KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            +   I   +TEK     G     VE A  + +    +I S+ NTI T +GGTH +  + 
Sbjct: 232 ALHDVIHIKRTEKVKTKNGEDEVIVEIAFQYTDSYSEDIVSFANTIKTVDGGTHVTAFKS 291

Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            LTR + +Y +     K+  S   +D+      ++SV+++ PEF GQTK+KL + + +  
Sbjct: 292 TLTRLMNEYGKKHNFLKKDDSFQGEDVREGLTAVISVYVKNPEFEGQTKSKLGNEEVKEA 351

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLA 454
           V  A+R+        NP     +L  ++   + R   ++ RE+  RK  ++   LPGKLA
Sbjct: 352 VTKAMREELKKIFDANPELVKTILSKIMSTKQAREAAKRAREMVRRKNVLQNTTLPGKLA 411

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS      TELFIVEGDSAGGSAKQAR+R  QAVLP+RGKILNV  +  +++  N+QI 
Sbjct: 412 DCSSTHREKTELFIVEGDSAGGSAKQARDREFQAVLPIRGKILNVEKSSLDRLLKNEQIS 471

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           D++ A+G      + E  LRY ++IIMTDAD+DGAHI +LLLT FY+ M  LIEQ  +++
Sbjct: 472 DIIVAVGTGIGDDFDESKLRYGRIIIMTDADIDGAHIRTLLLTLFYRYMRPLIEQGRVYI 531

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL+RI  G +  Y + ++   +  E+ +     +IEI R+KGLGEM   QL ET M+
Sbjct: 532 ALPPLYRIKAGREEFYVYSDQELAEYKEKLQG---KRIEIQRYKGLGEMNPEQLWETTMN 588

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              R ++RV I       ++       LMG     R +FI+  A  + ++ 
Sbjct: 589 PETRKIIRVTIED----AEEADRLFEILMGNDPSSRREFIERHALKVKELD 635


>gi|317120855|ref|YP_004100858.1| DNA gyrase subunit B [Thermaerobacter marianensis DSM 12885]
 gi|315590835|gb|ADU50131.1| DNA gyrase subunit B [Thermaerobacter marianensis DSM 12885]
          Length = 635

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/648 (40%), Positives = 369/648 (56%), Gaps = 25/648 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YD S I++LEGLE VR RPGMYIG T  + LHHL  EV+DNA+DE +AG    I V+L  
Sbjct: 6   YDESQIQVLEGLEAVRRRPGMYIGSTGPRGLHHLIWEVVDNAVDEALAGRCTAITVTLHA 65

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G  +V DNG GIPV  HPK   K T+E++LT LHAGGKFD   Y++SGGLHGVG+SVVN
Sbjct: 66  DGSCSVRDNGGGIPVGIHPKV-GKPTVEVVLTMLHAGGKFDGQAYKVSGGLHGVGVSVVN 124

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKAGF 222
           ALS+ L V V R+  I  Q++ RG P + LE          GT + F+PDP+IF +   F
Sbjct: 125 ALSEWLEVEVRREGRIHRQRYRRGKPDTDLEVVGTTDPADTGTYVRFKPDPEIFEET-EF 183

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               ++   +  A L+  +      ++         E+  F F GGL++++      +  
Sbjct: 184 KYDVVVGRLREIALLNSGLYIELKDER-------TGERNLFQFMGGLRSFVALLNRTKEP 236

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +  E  + K E+ G     VE A+ W       + S+ NTI T EGGTHE+G ++ALTR 
Sbjct: 237 LHPEPISYKGERDGV---EVEMALQWTTSYVETLYSFANTIHTHEGGTHEAGFKMALTRV 293

Query: 342 IKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +  YA      +    ++  DD+      +LSV + EP+F GQTKTKL + + +  V++ 
Sbjct: 294 VNDYARKANLIKNGEENLSGDDIREGLTAVLSVKLPEPQFEGQTKTKLGNSEVRGVVDSV 353

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
             +    Y  +NP  A +++E  I     R   RK RE   RK+A+    LPGKL DC+ 
Sbjct: 354 TGEALATYFEENPQVARRVVEKAITAMRAREAARKARELTRRKSALEVTALPGKLTDCTV 413

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 ELFIVEGDSAGGSAKQ R+R  QAVLPLRGKILNV  A  +KI  + +I  L+ 
Sbjct: 414 RDPAMAELFIVEGDSAGGSAKQGRDRRFQAVLPLRGKILNVEKARLDKILAHDEIRALIT 473

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+G      +  +  RY K+I+MTDADVDGAHI +LLLTFF++ M  LIE  ++++  PP
Sbjct: 474 AIGTGIGEDFDIQKARYHKIILMTDADVDGAHIRTLLLTFFFRYMKPLIEAGYVYIAQPP 533

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+ +  G +  Y +D++  +    +  K         RFKGLGEM A QL ET M+   R
Sbjct: 534 LYLVRMGKEEHYFYDDDQLEAFFRQIGKRMPA----QRFKGLGEMNAEQLWETTMNPETR 589

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           TLL+V +   +          + LMG++ + R +FI++ A  +  + T
Sbjct: 590 TLLQVTLEDAM----AADQIFSILMGSRVEPRREFIEQHARKVRFLDT 633


>gi|253581066|ref|ZP_04858326.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847602|gb|EES75572.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 641

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/648 (40%), Positives = 377/648 (58%), Gaps = 19/648 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y A  I+ILEGLE VR RPGMYIG T  + LHHL  E++DNA+DE +AG+   I+V ++
Sbjct: 7   EYGADQIQILEGLEAVRKRPGMYIGSTSGRGLHHLVYEIVDNAVDEALAGFCTEIQVVIN 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TVVDNGRGIPV  + K      +E++ T LHAGGKF    Y++SGGLHGVG SVV
Sbjct: 67  PDNSITVVDNGRGIPVGINHKA-GIPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGASVV 125

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221
           NALS  L V +  +  I+ Q++ RG  + PL+       +K GT + F PD +IF +   
Sbjct: 126 NALSTWLEVRIYHEGKIYQQRYERGKTMYPLKVVGDCQPDKTGTTVVFLPDKEIFEETV- 184

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +D   L +  +  A+L+  +K      +E  E+  +     F++ GG++ ++     ++ 
Sbjct: 185 YDYDILKQRLREMAFLTKGLKISLKDTREGMEREKV-----FHYEGGIREFVSYLNRSKE 239

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            +  EI   + ++ G    +VE A+   +        + N I T EGGTH  G R ALT+
Sbjct: 240 ALYPEIIYCEGQQNGV---SVEVAMQHNDSYTENCYGFVNNINTPEGGTHIVGFRNALTK 296

Query: 341 GIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
               YA   +  +    ++  DD+      I+SV I  P+F GQTK KL + +A+  V++
Sbjct: 297 TFNDYARKNKLLKDSEPNLSGDDIREGLTAIVSVKIENPQFEGQTKQKLGNSEARGAVDS 356

Query: 399 ALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
            +    + +L QNP  A   +E  V+ +      R+ +    RK+A+  + LPGKLADCS
Sbjct: 357 VVSKQLEIFLEQNPTVAKTTVEKSVLAQRAREAARKARDLTRRKSALDNMSLPGKLADCS 416

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                  E++IVEGDSAGGSAK ARNR  QA+LPLRGKILNV  A  +KI  N +I  ++
Sbjct: 417 DKNPENCEIYIVEGDSAGGSAKTARNRVTQAILPLRGKILNVEKARLDKIYANAEIKAMI 476

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A G      +    LRY K+IIMTDADVDGAHIA+LLLTF Y+ M +LI+Q +++L  P
Sbjct: 477 TAFGTGIHEDFDISKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGYVYLAQP 536

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+++ +  K  YA+D++   +IL E  + G  K  I R+KGLGEM A QL ET MD  K
Sbjct: 537 PLYKVEKNKKVWYAYDDDELNQILTEIGRDGNNK--IQRYKGLGEMDADQLWETTMDPEK 594

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           R LL+V +++   +  +   +   LMG K + R +FI+E A F+ ++ 
Sbjct: 595 RILLKVTMDEA--ATSEIDLTFTTLMGDKVEPRREFIEENARFVKNLD 640


>gi|125974861|ref|YP_001038771.1| DNA gyrase subunit B [Clostridium thermocellum ATCC 27405]
 gi|256003883|ref|ZP_05428870.1| DNA gyrase, B subunit [Clostridium thermocellum DSM 2360]
 gi|281418684|ref|ZP_06249703.1| DNA gyrase, B subunit [Clostridium thermocellum JW20]
 gi|125715086|gb|ABN53578.1| DNA gyrase subunit B [Clostridium thermocellum ATCC 27405]
 gi|255992221|gb|EEU02316.1| DNA gyrase, B subunit [Clostridium thermocellum DSM 2360]
 gi|281407768|gb|EFB38027.1| DNA gyrase, B subunit [Clostridium thermocellum JW20]
 gi|316939072|gb|ADU73106.1| DNA gyrase, B subunit [Clostridium thermocellum DSM 1313]
          Length = 641

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/647 (40%), Positives = 381/647 (58%), Gaps = 22/647 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YD S+I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AG+ N I+V +  
Sbjct: 11  YDESNIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVYEIMDNSIDEALAGFCNEIKVIIHK 70

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +  +T +DNGRGIPV  HPK    ST+E++ T LHAGGKFD   Y++SGGLHGVG SVVN
Sbjct: 71  DNSITNIDNGRGIPVGIHPKL-GISTVEVVHTILHAGGKFDGQGYKVSGGLHGVGASVVN 129

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS+ L V V R   I+ Q++ RG P++P+E      N  GT+ TF+PDP+IF     FD
Sbjct: 130 ALSEFLEVEVFRDGHIYRQRYERGKPVTPVEIIGDT-NLTGTKTTFKPDPEIFEVT-EFD 187

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              LL   +  A+L+  +K     ++        P ++  ++ GG+ ++++    N+  +
Sbjct: 188 FEVLLTRLRELAFLNKGLKIILRDER-----PEEPVEKHLHYEGGIVSFVEYMDRNKDPL 242

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCE--ENPEITSYCNTILTDEGGTHESGLRVALTRG 341
              I      K G     VE A+ + +      I S+ N I T EGGTH +G + A+T+ 
Sbjct: 243 HEPI-YFDGYKDG---CYVEIAMQYNKDVYVENIHSFANNISTAEGGTHLTGFKTAITKV 298

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +  YA+      +   +++ +D+      ++SV I +P+F GQTKTKL + + +  VE+ 
Sbjct: 299 LNDYAKKFNFLKENDKNLLGEDVREGLTAVISVKIPDPQFEGQTKTKLGNSEVRSFVESI 358

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + + F  +L +NP     +L+  I  +  R   RK RE   RK  +    LPGKLADC++
Sbjct: 359 INEKFASFLEENPSVTRLILDKCIMSARAREAARKARELTRRKNVLETSTLPGKLADCTE 418

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E+FIVEGDSAGGSAKQ RNR  QA+LPL GK+LNV  A  +K+  N ++  ++ 
Sbjct: 419 RDPSLCEIFIVEGDSAGGSAKQGRNRRFQAILPLWGKMLNVEKARVDKVYGNDKLTPVIM 478

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG      +    LRY K+IIM DADVDGAHI +LLLTFFY+ M  LI   ++++  PP
Sbjct: 479 ALGTNIGQDFDITKLRYHKIIIMADADVDGAHIRTLLLTFFYRYMTPLITNGYVYIAQPP 538

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L++IT+G   +YA+++   +KI+ E  +  K +  I RFKGLGEM   QL  T MD   R
Sbjct: 539 LYKITKGKTELYAYNDSELEKIIRE-NQWKKEECTIQRFKGLGEMNPEQLWTTTMDPETR 597

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T+LRVE+   +       +    LMG K + R +FIQ  A  + ++ 
Sbjct: 598 TILRVELEDAI----AADEIFTILMGDKVEPRKEFIQANAKLVTNLD 640


>gi|295106380|emb|CBL03923.1| DNA gyrase subunit B [Gordonibacter pamelaeae 7-10-1-b]
          Length = 656

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/664 (38%), Positives = 380/664 (57%), Gaps = 22/664 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            +  +  D+YD S I++LEGLE VR RPGMYIG T  + LHHL  EV+DNA+DE +AGY 
Sbjct: 1   MSVANKPDHYDGSDIQVLEGLEAVRKRPGMYIGSTGPRGLHHLVYEVVDNAVDEALAGYC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + IEV +  +  +TV DNGRGIPV+ HPK     T+E++LT LHAGGKF    Y++SGGL
Sbjct: 61  DTIEVWIHPDNSITVDDNGRGIPVDKHPK-EKIPTVEVVLTILHAGGKFGGEGYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS  + V+V ++   +   F  G     L +  KVR   GT +TF PDP 
Sbjct: 120 HGVGVSVVNALSSRVEVSVFKEGVQYDISFDHGKTAEKLREVGKVRRGNGTTVTFWPDPT 179

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI-----AEKYGIPEKEEFYFPGGL 269
           IF D   +D   L    +  A+L+  +K     ++       ++    P  E F + GG+
Sbjct: 180 IFTDTTVYDYDTLASRFREMAFLNKGLKIILHDERVNPGSTLSDLAPEPRTEVFQYAGGI 239

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGT 329
             +++   E +  ++  I+       GT    ++W+ ++      + ++ N I T EGGT
Sbjct: 240 VDFVKFLNEGKETLNKPIYFEAENDDGTVEVAMQWSSSYSTN--SVMAFANNINTHEGGT 297

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G + A+TR I +YA       ++  ++  DD       I+SV + +P+F GQTKTKL
Sbjct: 298 HLDGFKQAVTRTINEYARAKGILKEKDSNLSGDDTREGCAAIISVKLHDPQFEGQTKTKL 357

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRK 446
            + + +  V+NA+      YL +NP  A ++++   +  + R   RK RE+ R+   +  
Sbjct: 358 GNTEIRPLVQNAVTQGLAEYLEENPKPAKRIIDKATQALKAREAARKAREMTRRKGVLDS 417

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADCS      +E+FIVEGDSAGGSAKQAR+R  QA+LPLRGKILNV  AG  +
Sbjct: 418 FALPGKLADCSSKTPADSEIFIVEGDSAGGSAKQARDRKTQAILPLRGKILNVERAGLHR 477

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
             ++  I  L+ A+G      +  +  RY ++IIMTDADVDGAHI  LLLTFFY+ M +L
Sbjct: 478 SLSSDTISSLITAIGTNIGDDFDADQARYHRIIIMTDADVDGAHIRCLLLTFFYRYMPEL 537

Query: 567 IEQKHLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
           I + ++++  PP+F + +          Y +DE     +L E+      K ++ R+KGLG
Sbjct: 538 INRGYIYIAQPPIFGLKKKNSRSPKIERYIYDESALGSVLAEY--DNPDKFDVQRYKGLG 595

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           EM   QL ET M+   RTLL+V I+       + +  +++LMG + + R +FIQ+ A  +
Sbjct: 596 EMDPDQLWETTMEPETRTLLQVNIDD----AAEAERVVSELMGDQVEPRKEFIQKHARDV 651

Query: 682 DDVG 685
             + 
Sbjct: 652 RFLD 655


>gi|225629085|ref|ZP_03787118.1| DNA topoisomerase IV, B subunit [Brucella ceti str. Cudo]
 gi|260167389|ref|ZP_05754200.1| DNA topoisomerase IV subunit B [Brucella sp. F5/99]
 gi|261756798|ref|ZP_06000507.1| DNA topoisomerase IV subunit B [Brucella sp. F5/99]
 gi|225615581|gb|EEH12630.1| DNA topoisomerase IV, B subunit [Brucella ceti str. Cudo]
 gi|261736782|gb|EEY24778.1| DNA topoisomerase IV subunit B [Brucella sp. F5/99]
          Length = 699

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/701 (60%), Positives = 533/701 (76%), Gaps = 22/701 (3%)

Query: 3   DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSP-----------------AFANQSASDNYD 45
           DDS DLFS +   ++    + +        P                 A    S  D+Y+
Sbjct: 2   DDSNDLFSRVVNNARERQMERQTGENTVAQPVVQPAPSAPKPVPAAAKAPPAASGGDDYN 61

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNG 105
           ASSIR+LEGLEPVR+RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+AN IEV++D  G
Sbjct: 62  ASSIRVLEGLEPVRLRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHANFIEVTVDKEG 121

Query: 106 FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNAL 165
           F+TV DNGRGIPV+ HP+ P KSTLE+I+T LHAGGKFD   YE SGGLHGVG+SVVNAL
Sbjct: 122 FVTVSDNGRGIPVDEHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVSVVNAL 181

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225
           SD L V VAR   ++ Q FSRGIP   LE+  +V N+RGTR+ F PDP+IFG  A FD  
Sbjct: 182 SDVLEVEVARNRRLYRQCFSRGIPQGGLEELGEVHNRRGTRVRFHPDPEIFGKNAHFDPH 241

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
           RL +M +SKAYL G V+  W+CD  + + K   PEK  F+FPGGLK YL+  L     ++
Sbjct: 242 RLYRMARSKAYLFGGVEIRWNCDPSLLDPKKETPEKAVFHFPGGLKDYLEASLGKEHQVT 301

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKK 344
            E+F G+TEK+G H G VEWA+AW   +  + SYCNTI T +GGTHE+GLR+ALTRG+K 
Sbjct: 302 REVFAGRTEKQGGH-GAVEWAVAWFGGDGFVHSYCNTIPTGDGGTHEAGLRIALTRGLKA 360

Query: 345 YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF 404
           YAELT NKRA  I +DD+M+SA G+LSVFIREPEF GQTK KL +++AQR VENA+RDPF
Sbjct: 361 YAELTNNKRASIITTDDVMVSASGMLSVFIREPEFVGQTKDKLATVEAQRLVENAIRDPF 420

Query: 405 DHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGT 464
           DH+L  +P EA++LLEWVI+R++ERLRRR+++E  RK+A RKLRLPGKLADC+QN A G 
Sbjct: 421 DHWLAASPQEASRLLEWVIDRADERLRRRQEKETVRKSATRKLRLPGKLADCTQNAAAGA 480

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           ELFIVEGDSAGGSAKQARNR+NQA+LPLRGKILNVASAG EK+  NQQI DLVQALGC T
Sbjct: 481 ELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLTANQQIADLVQALGCGT 540

Query: 525 RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ 584
           R  YRE+DLRY++VI+MTDADVDGAHIASLL+TFFYQEM +LI   HL+L  PPL+R++Q
Sbjct: 541 RKNYREDDLRYDRVIVMTDADVDGAHIASLLITFFYQEMPELIRNGHLYLAVPPLYRLSQ 600

Query: 585 GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644
           G K+ YA D+ HK+++L      G+GKIEI RFKGLGEM A QLKET MD  KRTLLRV+
Sbjct: 601 GGKTAYARDDAHKEELLRTVF-TGRGKIEIGRFKGLGEMRADQLKETTMDPAKRTLLRVQ 659

Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           ++++     +T+++++ LMGTK + RF+FIQ+RA+F++++ 
Sbjct: 660 VDEEYGD--ETRNTVDDLMGTKPEARFRFIQDRAAFVEELD 698


>gi|17989021|ref|NP_541654.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 1 str. 16M]
 gi|62317552|ref|YP_223405.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 1 str. 9-941]
 gi|83269533|ref|YP_418824.1| DNA topoisomerase IV subunit B [Brucella melitensis biovar Abortus
           2308]
 gi|225686377|ref|YP_002734349.1| DNA topoisomerase IV subunit B [Brucella melitensis ATCC 23457]
 gi|237817100|ref|ZP_04596092.1| DNA topoisomerase IV, B subunit [Brucella abortus str. 2308 A]
 gi|254691049|ref|ZP_05154303.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 6 str. 870]
 gi|254695645|ref|ZP_05157473.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 3 str. Tulya]
 gi|254698833|ref|ZP_05160661.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254699828|ref|ZP_05161656.1| DNA topoisomerase IV subunit B [Brucella suis bv. 5 str. 513]
 gi|254705913|ref|ZP_05167741.1| DNA topoisomerase IV subunit B [Brucella pinnipedialis M163/99/10]
 gi|254712402|ref|ZP_05174213.1| DNA topoisomerase IV subunit B [Brucella ceti M644/93/1]
 gi|254715474|ref|ZP_05177285.1| DNA topoisomerase IV subunit B [Brucella ceti M13/05/1]
 gi|254732280|ref|ZP_05190858.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 4 str. 292]
 gi|256015368|ref|YP_003105377.1| DNA topoisomerase IV subunit B [Brucella microti CCM 4915]
 gi|256043489|ref|ZP_05446416.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256059216|ref|ZP_05449422.1| DNA topoisomerase IV subunit B [Brucella neotomae 5K33]
 gi|256111492|ref|ZP_05452506.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 3 str.
           Ether]
 gi|256157716|ref|ZP_05455634.1| DNA topoisomerase IV subunit B [Brucella ceti M490/95/1]
 gi|256253313|ref|ZP_05458849.1| DNA topoisomerase IV subunit B [Brucella ceti B1/94]
 gi|256256234|ref|ZP_05461770.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 9 str. C68]
 gi|256262482|ref|ZP_05465014.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 2 str.
           63/9]
 gi|260544788|ref|ZP_05820609.1| DNA topoisomerase IV subunit B [Brucella abortus NCTC 8038]
 gi|260564683|ref|ZP_05835168.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 1 str. 16M]
 gi|260756645|ref|ZP_05868993.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 6 str. 870]
 gi|260760075|ref|ZP_05872423.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 4 str. 292]
 gi|260763314|ref|ZP_05875646.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260882462|ref|ZP_05894076.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 9 str. C68]
 gi|261216044|ref|ZP_05930325.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 3 str. Tulya]
 gi|261217208|ref|ZP_05931489.1| DNA topoisomerase IV subunit B [Brucella ceti M13/05/1]
 gi|261220428|ref|ZP_05934709.1| DNA topoisomerase IV subunit B [Brucella ceti B1/94]
 gi|261313342|ref|ZP_05952539.1| DNA topoisomerase IV subunit B [Brucella pinnipedialis M163/99/10]
 gi|261320079|ref|ZP_05959276.1| DNA topoisomerase IV subunit B [Brucella ceti M644/93/1]
 gi|261323165|ref|ZP_05962362.1| DNA topoisomerase IV subunit B [Brucella neotomae 5K33]
 gi|261750301|ref|ZP_05994010.1| DNA topoisomerase IV subunit B [Brucella suis bv. 5 str. 513]
 gi|265989906|ref|ZP_06102463.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265992989|ref|ZP_06105546.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 3 str.
           Ether]
 gi|265996221|ref|ZP_06108778.1| DNA topoisomerase IV subunit B [Brucella ceti M490/95/1]
 gi|294853612|ref|ZP_06794284.1| DNA topoisomerase IV [Brucella sp. NVSL 07-0026]
 gi|297249591|ref|ZP_06933292.1| DNA topoisomerase IV, B subunit [Brucella abortus bv. 5 str. B3196]
 gi|17984860|gb|AAL53918.1| DNA gyrase subunit b [Brucella melitensis bv. 1 str. 16M]
 gi|62197745|gb|AAX76044.1| ParE, DNA topoisomerase IV, B subunit [Brucella abortus bv. 1 str.
           9-941]
 gi|82939807|emb|CAJ12815.1| Topoisomerase IV, subunit B:DNA gyrase, subunit B:DNA topoisomerase
           II:DNA gyrase, subunit B, C-terminal:ATP-binding region
           [Brucella melitensis biovar Abortus 2308]
 gi|225642482|gb|ACO02395.1| DNA topoisomerase IV, B subunit [Brucella melitensis ATCC 23457]
 gi|237787913|gb|EEP62129.1| DNA topoisomerase IV, B subunit [Brucella abortus str. 2308 A]
 gi|255998028|gb|ACU49715.1| DNA topoisomerase IV subunit B [Brucella microti CCM 4915]
 gi|260098059|gb|EEW81933.1| DNA topoisomerase IV subunit B [Brucella abortus NCTC 8038]
 gi|260152326|gb|EEW87419.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 1 str. 16M]
 gi|260670393|gb|EEX57333.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 4 str. 292]
 gi|260673735|gb|EEX60556.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260676753|gb|EEX63574.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 6 str. 870]
 gi|260871990|gb|EEX79059.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 9 str. C68]
 gi|260917651|gb|EEX84512.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 3 str. Tulya]
 gi|260919012|gb|EEX85665.1| DNA topoisomerase IV subunit B [Brucella ceti B1/94]
 gi|260922297|gb|EEX88865.1| DNA topoisomerase IV subunit B [Brucella ceti M13/05/1]
 gi|261292769|gb|EEX96265.1| DNA topoisomerase IV subunit B [Brucella ceti M644/93/1]
 gi|261299145|gb|EEY02642.1| DNA topoisomerase IV subunit B [Brucella neotomae 5K33]
 gi|261302368|gb|EEY05865.1| DNA topoisomerase IV subunit B [Brucella pinnipedialis M163/99/10]
 gi|261740054|gb|EEY27980.1| DNA topoisomerase IV subunit B [Brucella suis bv. 5 str. 513]
 gi|262550518|gb|EEZ06679.1| DNA topoisomerase IV subunit B [Brucella ceti M490/95/1]
 gi|262763859|gb|EEZ09891.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 3 str.
           Ether]
 gi|263000575|gb|EEZ13265.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263092218|gb|EEZ16515.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 2 str.
           63/9]
 gi|294819267|gb|EFG36267.1| DNA topoisomerase IV [Brucella sp. NVSL 07-0026]
 gi|297173460|gb|EFH32824.1| DNA topoisomerase IV, B subunit [Brucella abortus bv. 5 str. B3196]
          Length = 699

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/701 (60%), Positives = 533/701 (76%), Gaps = 22/701 (3%)

Query: 3   DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSP-----------------AFANQSASDNYD 45
           DDS DLFS +   ++    + +        P                 A    S  D+Y+
Sbjct: 2   DDSNDLFSRVVNNARERQMERQTGENTVAQPVVQPAPSAPKPVPAAAKAPPAASGGDDYN 61

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNG 105
           ASSIR+LEGLEPVR+RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+AN IEV++D  G
Sbjct: 62  ASSIRVLEGLEPVRLRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHANFIEVTVDKEG 121

Query: 106 FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNAL 165
           F+TV DNGRGIPV+ HP+ P KSTLE+I+T LHAGGKFD   YE SGGLHGVG+SVVNAL
Sbjct: 122 FVTVSDNGRGIPVDEHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVSVVNAL 181

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225
           SD L V VAR   ++ Q FSRGIP   LE+  +V N+RGTR+ F PDP+IFG  A FD  
Sbjct: 182 SDVLEVEVARNRRLYRQCFSRGIPQGGLEELGEVHNRRGTRVRFHPDPEIFGKNAHFDPH 241

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
           RL +M +SKAYL G V+  W+CD  + + K   PEK  F+FPGGLK YL+  L     ++
Sbjct: 242 RLYRMARSKAYLFGGVEIRWNCDPSLLDPKKETPEKAVFHFPGGLKDYLEASLGKEHQVT 301

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKK 344
            E+F G+TEK+G H G VEWA+AW   +  + SYCNTI T +GGTHE+GLR+ALTRG+K 
Sbjct: 302 REVFAGRTEKQGGH-GAVEWAVAWFGGDGFVHSYCNTIPTGDGGTHEAGLRIALTRGLKA 360

Query: 345 YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF 404
           YAELT NKRA  I +DD+M+SA G+LSVFIREPEF GQTK KL +++AQR VENA+RDPF
Sbjct: 361 YAELTNNKRASIITTDDVMVSAAGMLSVFIREPEFVGQTKDKLATVEAQRLVENAIRDPF 420

Query: 405 DHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGT 464
           DH+L  +P EA++LLEWVI+R++ERLRRR+++E  RK+A RKLRLPGKLADC+QN A G 
Sbjct: 421 DHWLAASPQEASRLLEWVIDRADERLRRRQEKETVRKSATRKLRLPGKLADCTQNAAAGA 480

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           ELFIVEGDSAGGSAKQARNR+NQA+LPLRGKILNVASAG EK+  NQQI DLVQALGC T
Sbjct: 481 ELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLTANQQIADLVQALGCGT 540

Query: 525 RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ 584
           R  YRE+DLRY++VI+MTDADVDGAHIASLL+TFFYQEM +LI   HL+L  PPL+R++Q
Sbjct: 541 RKNYREDDLRYDRVIVMTDADVDGAHIASLLITFFYQEMPELIRNGHLYLAVPPLYRLSQ 600

Query: 585 GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644
           G K+ YA D+ HK+++L      G+GKIEI RFKGLGEM A QLKET MD  KRTLLRV+
Sbjct: 601 GGKTAYARDDAHKEELLRTVF-TGRGKIEIGRFKGLGEMRADQLKETTMDPAKRTLLRVQ 659

Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           ++++     +T+++++ LMGTK + RF+FIQ+RA+F++++ 
Sbjct: 660 VDEEYGD--ETRNTVDDLMGTKPEARFRFIQDRAAFVEELD 698


>gi|161620653|ref|YP_001594539.1| DNA topoisomerase IV subunit B [Brucella canis ATCC 23365]
 gi|254702966|ref|ZP_05164794.1| DNA topoisomerase IV subunit B [Brucella suis bv. 3 str. 686]
 gi|260568121|ref|ZP_05838590.1| DNA topoisomerase IV subunit B [Brucella suis bv. 4 str. 40]
 gi|261753574|ref|ZP_05997283.1| DNA topoisomerase IV subunit B [Brucella suis bv. 3 str. 686]
 gi|161337464|gb|ABX63768.1| DNA topoisomerase IV, B subunit [Brucella canis ATCC 23365]
 gi|260154786|gb|EEW89867.1| DNA topoisomerase IV subunit B [Brucella suis bv. 4 str. 40]
 gi|261743327|gb|EEY31253.1| DNA topoisomerase IV subunit B [Brucella suis bv. 3 str. 686]
          Length = 699

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/701 (60%), Positives = 533/701 (76%), Gaps = 22/701 (3%)

Query: 3   DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSP-----------------AFANQSASDNYD 45
           DDS DLFS +   ++    + +        P                 A    S  D+Y+
Sbjct: 2   DDSNDLFSRVVNNARERQMERQTGENTVAQPVVQPAPSAPKPVPAAAKAPPAASGGDDYN 61

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNG 105
           ASSIR+LEGLEPVR+RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+AN IEV++D  G
Sbjct: 62  ASSIRVLEGLEPVRLRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHANFIEVTVDKEG 121

Query: 106 FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNAL 165
           F+TV DNGRGIPV+ HP+ P KSTLE+I+T LHAGGKFD   YE SGGLHGVG+SVVNAL
Sbjct: 122 FVTVSDNGRGIPVDEHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVSVVNAL 181

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225
           SD L V VAR   ++ Q FSRGIP   LE+  +V N+RGTR+ F PDP+IFG  A FD  
Sbjct: 182 SDVLEVEVARNRRLYRQCFSRGIPQRGLEELGEVHNRRGTRVRFHPDPEIFGKNAHFDPH 241

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
           RL +M +SKAYL G V+  W+CD  + + K   PEK  F+FPGGLK YL+  L     ++
Sbjct: 242 RLYRMARSKAYLFGGVEIRWNCDPSLLDPKKETPEKAVFHFPGGLKDYLEASLGKEHQVT 301

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKK 344
            E+F G+TEK+G H G VEWA+AW   +  + SYCNTI T +GGTHE+GLR+ALTRG+K 
Sbjct: 302 REVFAGRTEKQGGH-GAVEWAVAWFGGDGFVHSYCNTIPTGDGGTHEAGLRIALTRGLKA 360

Query: 345 YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF 404
           YAELT NKRA  I +DD+M+SA G+LSVFIREPEF GQTK KL +++AQR VENA+RDPF
Sbjct: 361 YAELTNNKRASIITTDDVMVSAAGMLSVFIREPEFVGQTKDKLATVEAQRLVENAIRDPF 420

Query: 405 DHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGT 464
           DH+L  +P EA++LLEWVI+R++ERLRRR+++E  RK+A RKLRLPGKLADC+QN A G 
Sbjct: 421 DHWLAASPQEASRLLEWVIDRADERLRRRQEKETVRKSATRKLRLPGKLADCTQNAAAGA 480

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           ELFIVEGDSAGGSAKQARNR+NQA+LPLRGKILNVASAG EK+  NQQI DLVQALGC T
Sbjct: 481 ELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLTANQQIADLVQALGCGT 540

Query: 525 RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ 584
           R  YRE+DLRY++VI+MTDADVDGAHIASLL+TFFYQEM +LI   HL+L  PPL+R++Q
Sbjct: 541 RKNYREDDLRYDRVIVMTDADVDGAHIASLLITFFYQEMPELIRNGHLYLAVPPLYRLSQ 600

Query: 585 GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644
           G K+ YA D+ HK+++L      G+GKIEI RFKGLGEM A QLKET MD  KRTLLRV+
Sbjct: 601 GGKTAYARDDAHKEELLRTVF-TGRGKIEIGRFKGLGEMRADQLKETTMDPAKRTLLRVQ 659

Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           ++++     +T+++++ LMGTK + RF+FIQ+RA+F++++ 
Sbjct: 660 VDEEYGD--ETRNTVDDLMGTKPEARFRFIQDRAAFVEELD 698


>gi|21675071|ref|NP_663136.1| DNA gyrase subunit B [Chlorobium tepidum TLS]
 gi|21648310|gb|AAM73478.1| DNA gyrase subunit B [Chlorobium tepidum TLS]
          Length = 647

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/662 (40%), Positives = 383/662 (57%), Gaps = 25/662 (3%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
           ++     Q+AS  Y A++I++L+G+E VR RP MYIG    + LHHL  E++DNA+DE +
Sbjct: 3   ETDIQTAQNASTEYGATNIQVLDGIEHVRKRPAMYIGDIHSRGLHHLVYEIVDNAIDETL 62

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AGY + I V+++ +G +TV D+GRGIPV+ HP    KS LE+++T + AGGKFD   Y++
Sbjct: 63  AGYNDYIHVAMNPDGSVTVTDHGRGIPVDIHP-VKKKSALELVMTVIGAGGKFDKGAYKV 121

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG SVVNALS+   V V R   IF Q + RG+P   +E+     ++RGT++TF+
Sbjct: 122 SGGLHGVGASVVNALSEWCEVEVYRDGKIFRQTYRRGVPQGGVEEIG-TTDQRGTKVTFK 180

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PDP+IF     F    +L   +  A+L+  ++                 +E F++ GGLK
Sbjct: 181 PDPEIF-KITEFRKDIILDRMRELAFLNSNLRIIVQD--------AEGNEEIFHYEGGLK 231

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++    NR  +  E      E+  T    VE A+ + +     I SY N I T EGGT
Sbjct: 232 EFVRFIDSNRLSLLKEPIFLSGERDSTM---VEIALQYNDSYQENIFSYVNNINTHEGGT 288

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R ALTR +  YA+     + + I    DD       ++SV + EP+F GQTKTKL
Sbjct: 289 HVTGFRKALTRTLNAYAQKNDLLKNVKITLTGDDFKEGLTAVISVKVPEPQFEGQTKTKL 348

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
            + + Q  VE  + +    +   NP     ++E V   +  R   RK +E   RK+ +  
Sbjct: 349 GNSETQSIVETIVNEQLAEFAESNPGTLKLIIEKVKSAAISREAARKAKELTRRKSVLES 408

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADCS N     EL+IVEGDSAGGSAKQ R+RS QA+LPL+GKILNV  A   K
Sbjct: 409 SGLPGKLADCSINDPDHCELYIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKARLHK 468

Query: 507 IRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           +  N++I  ++ ALG     +    E LRY K+IIMTDADVDGAHI +LLLTFF++ M  
Sbjct: 469 MLENEEIKTIILALGTSIGEEEFSPEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYMRS 528

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKK--HGKGKIEISRFKGLGEM 623
           LIE   +F+  PPL+ +  G +  YA DE+ +  I+E+ KK   GK  + I R+KGLGEM
Sbjct: 529 LIEAGKVFIAQPPLYLVKSGREQQYAWDEDERLSIVEQMKKLQKGKANVSIQRYKGLGEM 588

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
              QL  T MD   R+LL+V +   +    +     + LMG K + R  FI++ A ++  
Sbjct: 589 NPEQLWSTTMDPAHRSLLQVTVENAM----EADQVFSTLMGDKVEPRRDFIEKNARYVRR 644

Query: 684 VG 685
           + 
Sbjct: 645 LD 646


>gi|162446893|ref|YP_001620025.1| DNA gyrase subunit B [Acholeplasma laidlawii PG-8A]
 gi|161985000|gb|ABX80649.1| DNA gyrase, subunit B [Acholeplasma laidlawii PG-8A]
          Length = 635

 Score =  643 bits (1657), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/652 (39%), Positives = 389/652 (59%), Gaps = 20/652 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
             + + +Y A +I+ILEGLE V+ RPGMYIG T E+ LHHL  E++DN++DE + GYA+ 
Sbjct: 2   PNNNNSHYTADNIQILEGLEAVKKRPGMYIGSTGERGLHHLVWEIVDNSIDEALGGYADE 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I + +     + V DNGRGIPV+ HPK   +  +E ILTTLHAGGKFD  +Y++SGGLHG
Sbjct: 62  ITIEILKGEVIRVTDNGRGIPVDIHPK-TKRPAVETILTTLHAGGKFDKGSYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVN LS+   V + +  TI+ QK+ RGIP   L+ K    +K GT I+F+ DP IF
Sbjct: 121 VGASVVNGLSEWFVVEIHKDGTIYEQKYERGIPAYDLKVKGST-DKSGTIISFQADPLIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   ++   L    Q  A+L+  +K     D+     +   + E F++ GG+  Y++  
Sbjct: 180 TETVIYNYETLRTRIQQLAFLNKGLKLNLIDDR-----FEENKSESFHYEGGITEYVKFL 234

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLR 335
            +++S I ++I     E+ G    TVE A+ + +        + N I T EGG HE G +
Sbjct: 235 NQSKSKIHNDIIYIDKEQDGI---TVELAMQFVDSYSPNLHSFTNNISTTEGGMHEDGFK 291

Query: 336 VALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           +ALTR I KYA+  + K+  SI  +D       I+SV   EP+F GQTKTKL + + +  
Sbjct: 292 MALTRVISKYADDLKMKKDDSISGEDTREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAI 351

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454
                 +  + +L++NP +A  ++E V+  +  R+  RK ++   RK+ +  L    KLA
Sbjct: 352 TSQITSEAIERFLMENPAQAKAIVEKVLLATRARVAARKAKDLTRRKSPLDALGFASKLA 411

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC       +E++IVEGDSAGGSAKQ R+   QA++PLRGK+LNV  A  +K+ +N++I+
Sbjct: 412 DCRSKDPEKSEIYIVEGDSAGGSAKQGRDSEFQAIMPLRGKVLNVEKARLDKMLSNKEIV 471

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           +L+QA+G     ++     RY K++IMTDADVDGAHI +LLLTF ++ M  LI+  +++ 
Sbjct: 472 NLIQAMGTGISDEFDITKARYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYA 531

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL++I+ G    YA++E+   ++L+  +     K  I R+KGLGEM A QL +T MD
Sbjct: 532 AQPPLYKISWGRNFQYAYNEQELNELLKTIE----TKPSIQRYKGLGEMDAEQLWDTTMD 587

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
             KRTLL++++   +    +     + LMG + + R +FIQ  A +  D+  
Sbjct: 588 PAKRTLLQIKLEDAI----EADQVFSMLMGEEVEPRKEFIQNNAQYATDIDA 635


>gi|325288206|ref|YP_004264387.1| DNA gyrase subunit B [Syntrophobotulus glycolicus DSM 8271]
 gi|324963607|gb|ADY54386.1| DNA gyrase subunit B [Syntrophobotulus glycolicus DSM 8271]
          Length = 645

 Score =  643 bits (1657), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/651 (39%), Positives = 386/651 (59%), Gaps = 23/651 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           S + +Y+A  I +LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AG+ + +E
Sbjct: 13  SPAADYNAGQIEVLEGLEAVRKRPGMYIGSTTSRGLHHLVYEIVDNSIDEAMAGFCDNVE 72

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +  +TV DNGRGIPV+ HPK   K  +E+ +T LHAGGKF    Y++SGGLHGVG
Sbjct: 73  VTIHNDNSITVKDNGRGIPVDIHPKM-KKPAVEVAMTILHAGGKFSGDAYKVSGGLHGVG 131

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+ L V V      + Q++SRG PL  L++    + + GT+I+F+PD +IF D
Sbjct: 132 MSVVNALSEWLKVEVKINGIRYQQEYSRGKPLYDLKEAGTYKGRTGTQISFKPDAQIFED 191

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              +D   L +  +  ++L+  +      ++           E F   GG+  Y++    
Sbjct: 192 VI-YDYEVLEQRLKELSFLNKNIGIALKDER-------TGAGELFKHSGGIVDYVKYLNR 243

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N+  I  +    + +K+      VE A  + +     I SY N I T EGGTHE+G + A
Sbjct: 244 NKDAIQPKPIYFEAQKE---ENIVEIAFQYNDGYSENIYSYANNINTTEGGTHEAGFKAA 300

Query: 338 LTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR I  YA      +    ++  +D+      I+SV +REP+F GQTKTKL + + +  
Sbjct: 301 LTRVINDYARKNNILKANENNLSGEDVREGLTAIISVKVREPQFEGQTKTKLGNSEMRSI 360

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454
           V++ L D    +  +NP  A K++E  ++ +  R+  RK R+   RK A+    LPGKLA
Sbjct: 361 VDSILGDGLSTFCEENPSVAKKIVEKGLQATRARMAARKARDLTRRKNALDSTSLPGKLA 420

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC+   A   E+++VEGDSAGGSAKQ R++  QA+LPLRGKILNV  A  ++I  N++I 
Sbjct: 421 DCAWKEAQFCEIYLVEGDSAGGSAKQGRDQKFQAILPLRGKILNVEKARLDRILANEEIR 480

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++ A+G      +  E  RY K++IMTDADVDG+HI  LLLTFFY+ M  L+E  ++++
Sbjct: 481 AMITAMGTGISDDFNLEKARYNKIVIMTDADVDGSHIRILLLTFFYRYMKPLLENNYVYI 540

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPLF+I +G +  YA+ +E    ILE     G+ ++EI R+KGLGEM   QL ET M+
Sbjct: 541 AQPPLFQIKKGKEIQYAYSDEELNHILEMI---GRERVEIQRYKGLGEMNPEQLWETTMN 597

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              RT+L+V++       +  ++     MG K D R ++IQ+ A  + ++ 
Sbjct: 598 PETRTILQVKMED----ARRAEELFTIFMGDKVDPRKEYIQKYAKDVKNLD 644


>gi|326335208|ref|ZP_08201404.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Capnocytophaga sp.
           oral taxon 338 str. F0234]
 gi|325692616|gb|EGD34559.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Capnocytophaga sp.
           oral taxon 338 str. F0234]
          Length = 656

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/667 (39%), Positives = 385/667 (57%), Gaps = 26/667 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + Q   D Y A +I+ LEG+E VR+RP MYIG    + LHHL  EV+DN++DE +AGY 
Sbjct: 1   MSEQLNQDKYSADNIQSLEGMEHVRVRPSMYIGDVGMRGLHHLVYEVLDNSIDEALAGYC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I V ++ +  +TV DNGRGIPV+ H K    S LE+++T + AGGKFD  +Y++SGGL
Sbjct: 61  DTISVFINPDNSITVEDNGRGIPVDIHKK-EGVSALEVVMTKIGAGGKFDKGSYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS  L  TV R    + Q++ RG+ L  +++  +    RGT++TF PD +
Sbjct: 120 HGVGVSVVNALSTHLTATVYRDGKEWQQEYERGVALYSVKEIGETNK-RGTKVTFLPDTE 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     F    L    +  A+L+  ++   +  +E  ++   P  +EFY   GL  ++Q
Sbjct: 179 IFQQSIEFSYDILASRIRELAFLNKGIRITLTDLREKDDQG-KPLSQEFYSEKGLVEFIQ 237

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333
               NR  I S+I + + EK       VE A+ + +   E    Y N I T EGGTH  G
Sbjct: 238 YLDGNRPPIISKIISMEGEKNEIP---VEVAMVYNDSFNENLHSYVNNINTHEGGTHLQG 294

Query: 334 LRVALTRGIKKYAELTQ--------NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
            R+ LTR +K YA+ +          K  + I  DD       I+SV + EP+F GQTKT
Sbjct: 295 FRMGLTRTLKNYADKSGLLEKASKDKKNPLEISGDDFREGLTAIISVKVAEPQFEGQTKT 354

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-I 444
           KL + +    V  A+ +  + YL +NP +A  ++  VI  ++ RL  +K RE  ++ + +
Sbjct: 355 KLGNREVTAAVSQAVSEMLESYLEENPEDAKTIVNKVILAAQARLAAKKAREAVQRKSPM 414

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC        ELF+VEGDSAGG+AKQ R++  QA+LPLRGKILNV  A  
Sbjct: 415 GGAGLPGKLADCQDKNPENCELFLVEGDSAGGTAKQGRDQKFQAILPLRGKILNVEKAMQ 474

Query: 505 EKIRNNQQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
            ++ ++++I ++  ALG    +           LRY K+IIM DADVDG+HIA+L+LTFF
Sbjct: 475 HRVLDSEEIRNIYTALGVTIGTDEDSKALNMSKLRYYKIIIMCDADVDGSHIATLILTFF 534

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
           ++ M +LIE+ H+++ +PPL+ + QG K  YA  +E +  I  EF    + K+ + R+KG
Sbjct: 535 FRYMRELIEEGHIYIATPPLYLLKQGKKEQYAWSDEERDAITNEFYSQAQAKVAVQRYKG 594

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679
           LGEM A+QL +T MD   RTL +V I   +    +     + LMG     R +FI++ A 
Sbjct: 595 LGEMNATQLADTTMDPKHRTLRKVTIENAV----EADRIFSMLMGDDVPPRREFIEKNAR 650

Query: 680 FIDDVGT 686
           +  ++  
Sbjct: 651 YA-NIDA 656


>gi|23097461|ref|NP_690927.1| DNA gyrase subunit B [Oceanobacillus iheyensis HTE831]
 gi|22775684|dbj|BAC11962.1| DNA gyrase subunit B [Oceanobacillus iheyensis HTE831]
          Length = 641

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/653 (39%), Positives = 382/653 (58%), Gaps = 22/653 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
             + +  Y A  I++LEGLE VR RPGMYIG T EK LHHL  E++DN++DE +AGY + 
Sbjct: 6   KITENQEYGADQIQVLEGLEAVRKRPGMYIGSTSEKGLHHLVWEIVDNSIDEALAGYCDH 65

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+V ++ +  +TV DNGRGIPV+   K   +  LE+I+T LHAGGKF    Y++SGGLHG
Sbjct: 66  IQVVVEEDNSITVKDNGRGIPVDIQQK-TGRPALEVIMTVLHAGGKFGGGGYKVSGGLHG 124

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS EL V V R   +    F +G+P   ++      +  GT   FRPD +IF
Sbjct: 125 VGASVVNALSSELEVYVHRDGKVHFLSFKKGVPDGEIKVIGDT-DITGTVTHFRPDTEIF 183

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   ++   L +  +  A+L+  +K      +   E      +  +++ GG+ +Y++  
Sbjct: 184 TETTEYNFDTLEQRLRELAFLNKGLKISIEDKRTDRE------QVTYHYEGGISSYVEFI 237

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            +N+ ++       + E +G    +VE AI + +     + S+ N I T EGG+HE G R
Sbjct: 238 NKNKEVLHEPF-FAEGEDQGI---SVEVAIQYNDGFASNLYSFANNIHTYEGGSHEVGFR 293

Query: 336 VALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
             LTR I  YA+     +    ++  DD+      I+S+   +P+F GQTKTKL + + +
Sbjct: 294 SGLTRIINDYAKKNGLIKDGDSNLSGDDVREGMTTIVSIKHPDPQFEGQTKTKLGNSEVR 353

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
              +    + F  +L +NP  A  ++E  +  S  RL  +K RE   RK+ +    LPGK
Sbjct: 354 AITDGVFSEAFSKFLYENPSTAKIIVEKGLMASRARLAAKKARELTRRKSNLEISNLPGK 413

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS   A  +EL+IVEGDSAGGSAK  R+R  QA+LPLRGKILNV  A  ++I +N +
Sbjct: 414 LADCSSRDAAISELYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDRILSNNE 473

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           +  ++ ALG     ++     RY K++IMTDADVDGAHI +LLLTFFY+ M  LIEQ ++
Sbjct: 474 VRAMITALGSGVGEEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRYMRPLIEQGYI 533

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL+++ QG    YA++++   +IL E  K    K  I R+KGLGEM A QL +T 
Sbjct: 534 YIAQPPLYQVKQGKTVNYAYNDKELDRILNEIPKA--PKPNIQRYKGLGEMNADQLWDTT 591

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           MD + RTLL+VE++  +    D     + LMG K + R  FI+E A ++ ++ 
Sbjct: 592 MDPDTRTLLQVELSDAI----DADQVFDMLMGDKVEPRRIFIEENAQYVKNLD 640


>gi|78707359|gb|ABB46485.1| DNA gyrase subunit B [Acholeplasma laidlawii]
 gi|78707361|gb|ABB46486.1| DNA gyrase subunit B [Acholeplasma laidlawii]
 gi|78707363|gb|ABB46487.1| DNA gyrase subunit B [Acholeplasma laidlawii]
          Length = 631

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/645 (39%), Positives = 386/645 (59%), Gaps = 20/645 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y A +I+ILEGLE V+ RPGMYIG T E+ LHHL  E++DN++DE + GYA+ I + +  
Sbjct: 5   YTADNIQILEGLEAVKKRPGMYIGSTGERGLHHLVWEIVDNSIDEALGGYADEITIEILK 64

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
              + V DNGRGIPV+ HPK   +  +E ILTTLHAGGKFD  +Y++SGGLHGVG SVVN
Sbjct: 65  GEVIRVTDNGRGIPVDIHPK-TKRPAVETILTTLHAGGKFDKGSYKVSGGLHGVGASVVN 123

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
            LS+   V + +  TI+ QK+ RGIP   L+ K    +K GT I+F+ DP IF +   ++
Sbjct: 124 GLSEWFVVEIHKDGTIYEQKYERGIPAYDLKVKGST-DKSGTIISFQADPLIFTETVIYN 182

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L    Q  A+L+  +K     D+     +   + E F++ GG+  Y++   +++S I
Sbjct: 183 YETLRTRIQQLAFLNKGLKLNLIDDR-----FEENKSESFHYEGGITEYVKFLNQSKSKI 237

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALTRGI 342
            ++I     E+ G    TVE A+ + +        + N I T EGG HE G ++ALTR I
Sbjct: 238 HNDIIYIDKEQDGI---TVELAMQFVDSYSPNLHSFTNNISTTEGGMHEDGFKMALTRVI 294

Query: 343 KKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRD 402
            KYA+  + K+  SI  +D       I+SV   EP+F GQTKTKL + + +        +
Sbjct: 295 SKYADDLKMKKDDSISGEDTREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAITSQITSE 354

Query: 403 PFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIA 461
             + +L++NP +A  ++E V+  +  R+  RK ++   RK+ +  L    KLADC     
Sbjct: 355 AIERFLMENPAQAKAIVEKVLLATRARVAARKAKDLTRRKSPLDALGFASKLADCRSKDP 414

Query: 462 HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
             +E++IVEGDSAGGSAKQ R+   QA++PLRGK+LNV  A  +K+ +N++I++L+QA+G
Sbjct: 415 EKSEIYIVEGDSAGGSAKQGRDSEFQAIMPLRGKVLNVEKARLDKMLSNKEIVNLIQAMG 474

Query: 522 CRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581
                ++     RY K++IMTDADVDGAHI +LLLTF ++ M  LI+  +++   PPL++
Sbjct: 475 TGISDEFDITKARYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYK 534

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I+ G    YA++E+   ++L+  +     K  I R+KGLGEM A QL +T MD  KRTLL
Sbjct: 535 ISWGRNFQYAYNEQELNELLKTIE----TKPSIQRYKGLGEMDAEQLWDTTMDPAKRTLL 590

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           ++++   +    +     + LMG + + R +FIQ  A +  D+  
Sbjct: 591 QIKLEDAI----EADQVFSMLMGEEVEPRKEFIQNNAQYATDIDA 631


>gi|226309593|ref|YP_002769487.1| DNA gyrase subunit B [Brevibacillus brevis NBRC 100599]
 gi|226092541|dbj|BAH40983.1| DNA gyrase subunit B [Brevibacillus brevis NBRC 100599]
          Length = 641

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/652 (41%), Positives = 387/652 (59%), Gaps = 20/652 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            +   NYDAS I++LEGLE VR RPGMYIG T  + LHHL  E++DNA+DE +AGY + I
Sbjct: 5   TTKDTNYDASQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVWEIVDNAIDEALAGYCDEI 64

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V +  +  ++V DNGRGIP   H K   KST+E +LT LHAGGKF    Y++SGGLHGV
Sbjct: 65  LVVIHPDNSVSVTDNGRGIPTGIHEK-TGKSTVETVLTVLHAGGKFGGGGYKVSGGLHGV 123

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS+ + V V + N ++  +F  G P + L    +     GT++TF+PDP IF 
Sbjct: 124 GSSVVNALSEWMEVEVKQNNQVYYMRFKVGAPDADLAVVGETEE-TGTKVTFKPDPTIFT 182

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F+   L K  +  A+L+  ++      +   EK      E F++ GG+  +++   
Sbjct: 183 ETTVFEYEILQKRIRELAFLNKGLRITLKDTRPDHEKE-----ESFHYEGGIIQFVEYLN 237

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           +NR  +  ++   + EK+G     VE A+ + +     I S+ N I T EGGTHE+G + 
Sbjct: 238 KNREALHDDVIYCEGEKEG---LVVEVALQYNDTYVSNIYSFANNINTHEGGTHETGFKT 294

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  Y+       ++  ++  DD+      I+SV I+EP+F GQTKTKL + +A+ 
Sbjct: 295 ALTRVINDYSRKFNFLKEKDPNLSGDDVREGITAIISVKIQEPQFEGQTKTKLGNSEARS 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
             E+   D F+ ++ +NP  A K++E  +  S  R   RK R    RK+A+    LPGKL
Sbjct: 355 ITESVFGDRFNTFMEENPGVAKKVVEKALMASRAREAARKAREMTRRKSALEVSALPGKL 414

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS   A  +ELFIVEGDSAGGSAK  R+R  QA+LPLRGK+LNV  A  +KI  N +I
Sbjct: 415 ADCSSKDASESELFIVEGDSAGGSAKMGRDRHFQAILPLRGKVLNVEKARLDKILGNNEI 474

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ ALG      +     RY KV+IMTDADVDG+HI +LLLTFF++ M  LIE  +++
Sbjct: 475 RAIITALGTGVGEDFDITKARYHKVVIMTDADVDGSHIRTLLLTFFFRYMKQLIEAGYIY 534

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           +  PPL+ I QG    YA++++ + ++L   K     K  + R+KGLGEM A QL ET M
Sbjct: 535 IAQPPLYSIKQGKTLHYAYNDKQRDEVLATLKAQ--PKPNVQRYKGLGEMNADQLWETTM 592

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D   RTLL+V++   +    D       LMG + + R +FI++ A+ + D+ 
Sbjct: 593 DPEVRTLLQVDLEDAM----DADMVFETLMGDEVEPRREFIEQYAANVRDLD 640


>gi|1790875|gb|AAB41130.1| DNA gyrase subunit B [Clostridium acetobutylicum ATCC 824]
          Length = 637

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/652 (39%), Positives = 385/652 (59%), Gaps = 21/652 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
              ++ YD S I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AGY + I
Sbjct: 2   SEKNEIYDESQIQVLEGLEAVRKRPGMYIGTTGTRGLHHLVYEIVDNSIDEALAGYCSHI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V +  +  +TV D+GRG+P+  H K   K T+E+I+T LHAGGKF    Y +SGGLHGV
Sbjct: 62  KVFIHKDNSVTVSDDGRGMPIGIHHKM-KKPTVEVIMTILHAGGKFGGGAYRVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS+   V V  +  I+ Q + RG   SP EK     ++ GT+I F+PDP+IF 
Sbjct: 121 GASVVNALSETCEVEVKTEGHIWKQTYHRGKVASPFEKIGD-SDEHGTKIYFKPDPEIFE 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           D   +D   L +  +  A+L+  +K   + ++         + E F++ GGLK+++    
Sbjct: 180 DT-EYDYDTLSQRLRELAFLNKGIKIELTDERH-------DKNEIFHYEGGLKSFVSYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N+ ++  E    +      +  +VE A+ + +     I S+ N I T EGGTH +G + 
Sbjct: 232 RNKEVVFKEPIYVEGSIDSNY--SVEIALQYNDGYNENIFSFANNIHTIEGGTHLAGFKT 289

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA+      +   ++  +D+      ++SV + EP+F GQTKTKL + + + 
Sbjct: 290 ALTRVINDYAKKFGYLKENDKNLSGEDIREGLTAVVSVKLTEPQFEGQTKTKLGNTEVRG 349

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKL 453
            V++ + +    YL +NP     +++  +  S  R   +K RE+ R+ + +    LPGKL
Sbjct: 350 IVDSIISERVSTYLEENPQIGKLVIDKALVASRAREAAKKAREITRRKSVLESTSLPGKL 409

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS   A   E++IVEGDSAGGSAKQ RNR  QA+LPLRGKI+NV     +KI N+++I
Sbjct: 410 ADCSSKDAEECEIYIVEGDSAGGSAKQGRNRRFQAILPLRGKIMNVEKQRIDKILNSEEI 469

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             +  A G      +    LRY K+IIMTDADVDGAHI +L+LTFFY+ M +LI + H+F
Sbjct: 470 KAMATAFGGGIGKDFDVSKLRYHKIIIMTDADVDGAHIRTLILTFFYRYMTELISEGHVF 529

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           +  PPL+++T+  K  YA+ ++  + +L++     K   +I R+KGLGEM   QL ET M
Sbjct: 530 IAQPPLYKVTKTRKEYYAYSDKELEDVLQDVGGKDKNT-DIQRYKGLGEMNPEQLWETTM 588

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +  +RTL++V I   +       +    LMG K D R KFI+E A+ + ++ 
Sbjct: 589 NPEQRTLIKVNIEDAM----AADEIFTILMGDKVDPRRKFIEENATKVVNLD 636


>gi|254720422|ref|ZP_05182233.1| DNA topoisomerase IV subunit B [Brucella sp. 83/13]
 gi|265985441|ref|ZP_06098176.1| DNA topoisomerase IV subunit B [Brucella sp. 83/13]
 gi|264664033|gb|EEZ34294.1| DNA topoisomerase IV subunit B [Brucella sp. 83/13]
          Length = 699

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/701 (60%), Positives = 532/701 (75%), Gaps = 22/701 (3%)

Query: 3   DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSP-----------------AFANQSASDNYD 45
           DDS DLFS +   ++    + +        P                 A    S  D+Y+
Sbjct: 2   DDSNDLFSRVVNNARERQMERQTGENTVAQPVVQPAPSAPKPVPAAAKAPPAASGGDDYN 61

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNG 105
           ASSIR+LEGLEPVR+RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+AN IEV++D  G
Sbjct: 62  ASSIRVLEGLEPVRLRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHANFIEVTVDKEG 121

Query: 106 FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNAL 165
           F+TV DNGRGIPV+ HP+ P KSTLE+I+T LHAGGKFD   YE SGGLHGVG+SVVNAL
Sbjct: 122 FVTVSDNGRGIPVDEHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVSVVNAL 181

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225
           SD L V VAR   ++ Q FSRGIP   LE+  +V N+RGTR+ F PDP+IFG  A FD  
Sbjct: 182 SDVLEVEVARNRRLYRQCFSRGIPQGGLEELGEVHNRRGTRVRFHPDPEIFGKNAHFDPH 241

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
           RL +M +SKAYL G V+  W+CD  + + K   P K  F+FPGGLK YL+  L     ++
Sbjct: 242 RLYRMARSKAYLFGGVEIRWNCDPSLLDPKKETPGKAVFHFPGGLKDYLEASLGKEHQVT 301

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKK 344
            E+F G+TEK+G H G VEWA+AW   +  + SYCNTI T +GGTHE+GLR+ALTRG+K 
Sbjct: 302 REVFAGRTEKQGGH-GAVEWAVAWFGGDGFVHSYCNTIPTGDGGTHEAGLRIALTRGLKA 360

Query: 345 YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF 404
           YAELT NKRA  I +DD+M+SA G+LSVFIREPEF GQTK KL +++AQR VENA+RDPF
Sbjct: 361 YAELTNNKRASIITTDDVMVSAAGMLSVFIREPEFVGQTKDKLATVEAQRIVENAIRDPF 420

Query: 405 DHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGT 464
           DH+L  +P EA++LLEWVI+R++ERLRRR+++E  RK+A RKLRLPGKLADC+QN A G 
Sbjct: 421 DHWLAASPQEASRLLEWVIDRADERLRRRQEKETVRKSATRKLRLPGKLADCTQNAAAGA 480

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           ELFIVEGDSAGGSAKQARNR+NQA+LPLRGKILNVASAG EK+  NQQI DLVQALGC T
Sbjct: 481 ELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLTANQQIADLVQALGCGT 540

Query: 525 RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ 584
           R  YRE+DLRY++VI+MTDADVDGAHIASLL+TFFYQEM +LI   HL+L  PPL+R++Q
Sbjct: 541 RKNYREDDLRYDRVIVMTDADVDGAHIASLLITFFYQEMPELIRNGHLYLAVPPLYRLSQ 600

Query: 585 GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644
           G K+ YA D+ HK+++L      G+GKIEI RFKGLGEM A QLKET MD  KRTLLRV+
Sbjct: 601 GGKTAYARDDAHKEELLRTVF-TGRGKIEIGRFKGLGEMRADQLKETTMDPAKRTLLRVQ 659

Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           ++++     +T+++++ LMGTK + RF+FIQ+RA+F++++ 
Sbjct: 660 VDEEYGD--ETRNTVDDLMGTKPEARFRFIQDRAAFVEELD 698


>gi|148269239|ref|YP_001243699.1| DNA gyrase, B subunit [Thermotoga petrophila RKU-1]
 gi|147734783|gb|ABQ46123.1| DNA gyrase subunit B [Thermotoga petrophila RKU-1]
          Length = 636

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/651 (40%), Positives = 379/651 (58%), Gaps = 24/651 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + Y A SI++L+GLEPVRMRPGMY+G T ++ LHHL  EV+DN++DE +AGY + I V+L
Sbjct: 2   EKYSAESIKVLKGLEPVRMRPGMYVGSTGKRGLHHLVYEVVDNSVDEALAGYCDWIRVTL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G + V DNGRGIPV+ HP+   +S LE++ T LHAGGKF   +Y+ISGGLHGVG+SV
Sbjct: 62  HEDGSVEVEDNGRGIPVDIHPE-EGRSALEVVFTVLHAGGKFSKDSYKISGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+ L V V R   I+ Q++ RG P++P+E   +  +K GT + F+PDP IF +   
Sbjct: 121 VNALSEWLEVRVHRDGKIYRQRYERGKPVTPVEVIGET-DKHGTIVRFKPDPLIFSET-E 178

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L    +  A+L   +K  +       +K        F F GG+  Y++     + 
Sbjct: 179 FDPDVLEHRLREIAFLVPGLKIEFEDRINGEKKT-------FKFDGGIVEYVKYLNRGKK 231

Query: 282 LISSEIFTGKTEK----KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            +   I   +TEK     G     VE A  + +    +I S+ NTI T +GGTH +  + 
Sbjct: 232 ALHDVIHIKRTEKVKTKNGEDEVIVEIAFQYTDSYSEDIVSFANTIKTVDGGTHVTAFKS 291

Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            LTR + +Y +     K+  S   +D+      ++SV+++ PEF GQTK+KL + + +  
Sbjct: 292 TLTRLMNEYGKKHNFLKKDDSFQGEDVREGLTAVISVYVKNPEFEGQTKSKLGNEEVKEA 351

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLA 454
           V  A+R+        N      +L  ++   + R   ++ RE+  RK  ++   LPGKLA
Sbjct: 352 VTKAMREELKKIFDANSDLVKAILSKIMSTKQAREAAKRAREMVRRKNVLQNTALPGKLA 411

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS      TELFIVEGDSAGGSAKQAR+R  QAVLP+RGKILNV  +  +++  N+QI 
Sbjct: 412 DCSSTHREKTELFIVEGDSAGGSAKQARDREFQAVLPIRGKILNVEKSSLDRLLKNEQIS 471

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           D++ A+G      + E  LRY ++IIMTDAD+DGAHI +LLLT FY+ M  LIEQ  +++
Sbjct: 472 DIIVAVGTGIGDDFDESKLRYGRIIIMTDADIDGAHIRTLLLTLFYRYMRPLIEQGRVYI 531

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL+RI  G +  Y + ++   +  E+ +     +IEI R+KGLGEM   QL ET M+
Sbjct: 532 ALPPLYRIKAGREEFYVYSDQELAEYKEKLQG---KRIEIQRYKGLGEMNPEQLWETTMN 588

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              R ++RV I       ++       LMG     R +FI+  A  + ++ 
Sbjct: 589 PETRKIIRVTIED----AEEADRLFEILMGNDPSSRREFIERHALKVKELD 635


>gi|258510025|ref|YP_003183459.1| DNA gyrase, B subunit [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257476751|gb|ACV57070.1| DNA gyrase, B subunit [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 637

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/654 (38%), Positives = 372/654 (56%), Gaps = 21/654 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            A++     YD S I +LEGL+ VR RPGMYIG T  K LHHL  E++DNA+DE +AG  
Sbjct: 1   MADRIPEQVYDESQIEVLEGLQAVRKRPGMYIGSTSAKGLHHLVWEIVDNAVDEALAGRC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             I V +  +  +TV+DNG G PV  HPK   +  +E +LTTLHAGGKF    Y++SGGL
Sbjct: 61  TRIVVQVHPDNSVTVIDNGAGFPVGIHPK-TGRPAVETVLTTLHAGGKFGGKGYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS+ + V V R   I+ Q++ RG PL  L+      +K GT+++F+PDP+
Sbjct: 120 HGVGASVVNALSEWMRVEVHRDGRIYVQEYERGTPLYDLKVIG-TTDKTGTKVSFKPDPE 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   F A  L+   +  A+L+  ++  +  ++E        ++  F + GG+  +++
Sbjct: 179 IFTETTVFSAETLMNRLRELAFLNAGLEIVFEDERE------GGKRAVFKYDGGVAEFVR 232

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESG 333
              +++ ++  +       K       VE A+ + +       S+ N I T EGGTHE+G
Sbjct: 233 WLNQSKDVLFDDPIYVSAVKDDV---AVEIALQYNDGYAATVYSFANNINTAEGGTHEAG 289

Query: 334 LRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            + ALTR I  YA      +    S+  DD+      ++SV + EP+F GQTKTKL + +
Sbjct: 290 FKSALTRVINDYARRYGFLKSNDNSMTGDDVREGLTAVVSVKVPEPQFEGQTKTKLGNSE 349

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
            +  VE    +    +L +NP  A K++E  I  +  R   R+ RE+ R   +    LPG
Sbjct: 350 VRGIVETLFAERMQMFLEENPSIARKIVEKCILAARAREAARRARELTRSKKMDVTSLPG 409

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL DCS      +ELF+VEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +K+  N+
Sbjct: 410 KLTDCSSKDPERSELFLVEGDSAGGSAKMGRDPQTQAILPLRGKIINVEKARLDKVLANE 469

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++ A G      +     RY K++IMTDAD DG+HI  LLLT FY+ M  LI+  +
Sbjct: 470 EIRAIITACGTGIGDDFDISKARYHKIVIMTDADHDGSHIRILLLTLFYRFMRPLIDAGY 529

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPL++I +G    YA+ +   ++IL+E  + G   + + R+KGLGEM A QL ET
Sbjct: 530 IYIAQPPLYKIEKGKVVRYAYSDAQLEQILQEMGREG---VRLQRYKGLGEMNADQLWET 586

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   RTLLRV +   +    D     + LMG K + R  FI E A F+ ++ 
Sbjct: 587 TMDPESRTLLRVTMEDAM----DADMIFSILMGDKVEPRRDFIAEHARFVRNLD 636


>gi|89101114|ref|ZP_01173950.1| DNA topoisomerase IV subunit B [Bacillus sp. NRRL B-14911]
 gi|89084169|gb|EAR63334.1| DNA topoisomerase IV subunit B [Bacillus sp. NRRL B-14911]
          Length = 640

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/649 (40%), Positives = 384/649 (59%), Gaps = 21/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
             +YD + I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I V 
Sbjct: 8   EQSYDENQIQVLEGLEAVRKRPGMYIGSTSSKGLHHLVWEIVDNSIDEALAGYCSEINVI 67

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TVVD+GRGIPV  H K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 68  IEKDNSITVVDDGRGIPVGIHEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 126

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R   +  QKF RG+P + L+   +     GT I F+PD +IF +  
Sbjct: 127 VVNALSTELEVFVRRDGKLHYQKFERGVPAADLKVIGEAEE-TGTTIHFKPDGEIFTETL 185

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            ++   L    +  A+L+  +K      +         +K E+++ GG+K+Y++     +
Sbjct: 186 EYEYEILANRIRELAFLNRGLKITIEDKR------AENKKSEYFYEGGIKSYVEHLNRTK 239

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
            ++  E    + EK+G    TVE AI + +     I SY N I T EGGTHESG + ALT
Sbjct: 240 EVLHEEPIYIEGEKEGI---TVEVAIQYNDGFTGNIYSYANNIHTYEGGTHESGFKTALT 296

Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA      +    ++  +D+      I+S+   +P+F GQTKTKL + + +   +
Sbjct: 297 RVINDYARKNGIFKDSDANLSGEDVREGLTAIVSIKHPDPQFEGQTKTKLGNSEVRTVTD 356

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
               D F+ +L++NP  A K++E  ++        ++ +    RK+A+    LPGKLADC
Sbjct: 357 TFFSDHFEKFLMENPQVARKVVEKGLMAARARLAAKKARELTRRKSALEVSSLPGKLADC 416

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  +
Sbjct: 417 SSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRAI 476

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A G      +     RY K++IMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 477 ITAAGTGIGDDFEISKARYHKIVIMTDADVDGAHIRTLLLTFFYRYMRQIIEAGYIYIAQ 536

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+++ QG +  YA++++   +I EE  K    K  I R+KGLGEM   QL ET MD  
Sbjct: 537 PPLYKVQQGKRVEYAYNDKQLDQIFEELPKA--PKPNIQRYKGLGEMNPEQLWETTMDPG 594

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            RTLL+V +   +    +  ++   LMG K + R +FI++ A ++ ++ 
Sbjct: 595 TRTLLQVSLEDAI----EADETFEILMGDKVEPRRQFIEDNAVYVKNLD 639


>gi|78707355|gb|ABB46483.1| DNA gyrase subunit B [Acholeplasma laidlawii]
          Length = 631

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/645 (40%), Positives = 386/645 (59%), Gaps = 20/645 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y A +I+ILEGLE V+ RPGMYIG T E+ LHHL  E++DN++DE + GYA+ I + +  
Sbjct: 5   YTADNIQILEGLEAVKKRPGMYIGSTGERGLHHLVWEIVDNSIDEALGGYADEITIEILK 64

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
              + V DNGRGIPV+ HPK   +  +E ILTTLHAGGKFD  +Y++SGGLHGVG SVVN
Sbjct: 65  GEVIRVTDNGRGIPVDIHPK-TKRPAVETILTTLHAGGKFDKGSYKVSGGLHGVGASVVN 123

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
            LS+   V + +  TI+ QK+ RGIP   L+ K    +K GT I+F+ DP IF +   ++
Sbjct: 124 GLSEWFVVEIHKDGTIYEQKYERGIPAYDLKIKGNT-DKTGTIISFQADPLIFTETVIYN 182

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L    Q  A+L+  +K     D+     +   + E F++ GG+  Y++   +++S I
Sbjct: 183 YETLRTRIQQLAFLNKGLKLNLIDDR-----FEESKIESFHYEGGITEYVKFLNQSKSKI 237

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALTRGI 342
            ++I     E+ G    TVE A+ + +        + N I T EGG HE G ++ALTR I
Sbjct: 238 HNDIIYIDKEQDGI---TVELAMQFVDSYSPNLHSFTNNISTTEGGMHEDGFKMALTRVI 294

Query: 343 KKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRD 402
            KYA+  + K+  SI  +D       I+SV   EP+F GQTKTKL + + +        +
Sbjct: 295 SKYADDLKMKKDDSISGEDTREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAITSQITSE 354

Query: 403 PFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIA 461
             + +L++NP +A  ++E V+  +  R+  RK ++   RK+ +  L    KLADC     
Sbjct: 355 AIERFLMENPTQAKAIVEKVLLATRARVAARKAKDLTRRKSPLDALGFASKLADCRSKDP 414

Query: 462 HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
             +E++IVEGDSAGGSAKQ R+   QA++PLRGK+LNV  A  +K+ +N++I++L+QA+G
Sbjct: 415 EKSEIYIVEGDSAGGSAKQGRDSEFQAIMPLRGKVLNVEKARLDKMLSNKEIVNLIQAMG 474

Query: 522 CRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581
                ++     RY K++IMTDADVDGAHI +LLLTF ++ M  LI+  +++   PPL++
Sbjct: 475 TGISDEFDITKARYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYK 534

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I+ G    YA++E+   +IL+  +     K  I R+KGLGEM A QL +T MD  KRTLL
Sbjct: 535 ISWGRNFQYAYNEQELNEILKTIE----TKPSIQRYKGLGEMDAEQLWDTTMDPAKRTLL 590

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           ++++   +    +     + LMG + + R +FIQ  A +  D+  
Sbjct: 591 QIKLEDAI----EADQVFSMLMGEEVEPRKEFIQNNAQYATDIDA 631


>gi|163844743|ref|YP_001622398.1| DNA topoisomerase IV subunit B [Brucella suis ATCC 23445]
 gi|163675466|gb|ABY39576.1| DNA topoisomerase IV, B subunit [Brucella suis ATCC 23445]
          Length = 699

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/701 (60%), Positives = 532/701 (75%), Gaps = 22/701 (3%)

Query: 3   DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSP-----------------AFANQSASDNYD 45
           DDS DLFS +   ++    + +        P                 A    S  D+Y+
Sbjct: 2   DDSNDLFSRVVNNARERQMERQTGENTVAQPVVQPAPSAPKPVPAAAKAPPAASGGDDYN 61

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNG 105
           ASSIR+LEGLEPVR+RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+AN IEV++D  G
Sbjct: 62  ASSIRVLEGLEPVRLRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHANFIEVTVDKEG 121

Query: 106 FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNAL 165
           F+TV DNGRGIPV+ HP+ P KSTLE+I+T LHAGGKFD   YE SGGLHGVG+SVVNAL
Sbjct: 122 FVTVSDNGRGIPVDEHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVSVVNAL 181

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225
           SD L V VAR   ++ Q FSRGIP   LE+  +V N+RGTR+ F PDP+IFG  A FD  
Sbjct: 182 SDVLEVEVARNRRLYRQCFSRGIPQGGLEELGEVHNRRGTRVRFHPDPEIFGKNAHFDPH 241

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
           RL +M +SKAYL G V+  W+CD  + + K   PEK  F+FPGGLK YL+  L     ++
Sbjct: 242 RLYRMARSKAYLFGGVEIRWNCDPSLLDPKKETPEKAVFHFPGGLKDYLEASLGKEHQVT 301

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKK 344
            E+F G+TEK+G H G VEWA+AW   +  + SYCNTI T +GGTHE+GLR+ALTRG+K 
Sbjct: 302 REVFAGRTEKQGGH-GAVEWAVAWFGGDGFVHSYCNTIPTGDGGTHEAGLRIALTRGLKA 360

Query: 345 YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF 404
           YAELT NKRA  I +DD+M+SA G+LSVFIREPEF GQTK KL +++AQR VENA+RDPF
Sbjct: 361 YAELTNNKRASIITTDDVMVSAAGMLSVFIREPEFVGQTKDKLATVEAQRLVENAIRDPF 420

Query: 405 DHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGT 464
           DH+L  +P EA++LLEWVI+R++ERLRRR+++E  RK+A RKLRL GKLADC+QN A G 
Sbjct: 421 DHWLAASPQEASRLLEWVIDRADERLRRRQEKETVRKSATRKLRLSGKLADCTQNAAAGA 480

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           ELFIVEGDSAGGSAKQARNR+NQA+LPLRGKILNVASAG EK+  NQQI DLVQALGC T
Sbjct: 481 ELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLTANQQIADLVQALGCGT 540

Query: 525 RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ 584
           R  YRE+DLRY++VI+MTDADVDGAHIASLL+TFFYQEM +LI   HL+L  PPL+R++Q
Sbjct: 541 RKNYREDDLRYDRVIVMTDADVDGAHIASLLITFFYQEMPELIRNGHLYLAVPPLYRLSQ 600

Query: 585 GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644
           G K+ YA D+ HK+++L      G+GKIEI RFKGLGEM A QLKET MD  KRTLLRV+
Sbjct: 601 GGKTAYARDDAHKEELLRTVF-TGRGKIEIGRFKGLGEMRADQLKETTMDPAKRTLLRVQ 659

Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           ++++     +T+++++ LMGTK + RF+FIQ+RA+F++++ 
Sbjct: 660 VDEEYGD--ETRNTVDDLMGTKPEARFRFIQDRAAFVEELD 698


>gi|320531090|ref|ZP_08032119.1| DNA gyrase, B subunit [Selenomonas artemidis F0399]
 gi|320136672|gb|EFW28625.1| DNA gyrase, B subunit [Selenomonas artemidis F0399]
          Length = 684

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/685 (37%), Positives = 380/685 (55%), Gaps = 32/685 (4%)

Query: 14  PQSQGSSEKLKKSGEIPDSPAFANQSAS---------DNYDASSIRILEGLEPVRMRPGM 64
           P +    ++  +  + PD    A  +            +Y A  I++LEGLE VR RPGM
Sbjct: 18  PLTPEEMKEAAEMADAPDLSGIAISAEEMGADVTAVDADYGAGQIQVLEGLEAVRKRPGM 77

Query: 65  YIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKF 124
           YIG T E+ LHHL  EV+DN++DE +AGY + + V++  +  +TVVDNGRGIPV+ H   
Sbjct: 78  YIGSTSERGLHHLVYEVVDNSIDEALAGYCDTVAVTIHRDNSITVVDNGRGIPVDMHE-- 135

Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184
                +E++LT LHAGGKF    Y++SGGLHGVG+SVVNALS  + V V R   I+   F
Sbjct: 136 SGMPAVEVVLTVLHAGGKFGGDGYKVSGGLHGVGVSVVNALSSSMDVQVRRDGHIYEIAF 195

Query: 185 SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244
           +RG     L +        GTR+ F PDP+IF     +    L    +  A+L+  +   
Sbjct: 196 ARGNTTEKLHEVG-TSETTGTRVHFVPDPEIFTVTT-YSFETLKHRLRELAFLNHGITIT 253

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
            + ++           E F+F GG+++++      +  I+ E       K  T    VE 
Sbjct: 254 LTDER-----GEELRSETFHFDGGIRSFVSHLNRKKETINEEPIYFNGVKDDT---VVEI 305

Query: 305 AIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDD 361
           A+ + +     I S+ N I T+EGGTH +G ++ALTR    +A       ++  ++  +D
Sbjct: 306 AMQYNDSYQENIYSFVNNINTEEGGTHLAGFKIALTRAANDFARRLNVLKEKDGNLSGED 365

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
           +      ++S+ +REP+F GQTKTKL + + +  V++ + +    Y  +NP    K+L+ 
Sbjct: 366 VREGLTAVISLKVREPQFEGQTKTKLGNSEVRGIVDSIVTEGLTEYFEENPNVTKKVLDK 425

Query: 422 VIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
            +  S  R   RK RE   RK A+    LPGKLADCS       E++IVEGDSAGGSAKQ
Sbjct: 426 ALMASRAREAARKARELTRRKNALEVSSLPGKLADCSVKDPDQCEIYIVEGDSAGGSAKQ 485

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            R+R  QA+LPLRGKILNV  A  +KI  N +I  ++ A G     ++     RY K+II
Sbjct: 486 GRDRRFQAILPLRGKILNVEKARLDKIFANAEIRTMITAFGTGIGEEFDLSKRRYSKIII 545

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKI 600
           MTDADVDGAHI +LLLTFFY+ M  L++  H+++  PPL++I +  K  Y + +E + K 
Sbjct: 546 MTDADVDGAHIRTLLLTFFYRYMRPLVDHGHVYIAQPPLYQIRKDKKHFYTYTDEEQAKK 605

Query: 601 LEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660
           L+E  + G   + I R+KGLGEM   QL ET M+ ++RT+LRV         +   +   
Sbjct: 606 LDEIGRDG---VTIQRYKGLGEMNPEQLWETTMNPSERTMLRV----AAEDAEAADELFT 658

Query: 661 KLMGTKADERFKFIQERASFIDDVG 685
            LMG K + R +FI+E A  + ++ 
Sbjct: 659 ILMGDKVEPRRQFIEENARLVRNLD 683


>gi|170287901|ref|YP_001738139.1| DNA gyrase, B subunit [Thermotoga sp. RQ2]
 gi|170175404|gb|ACB08456.1| DNA gyrase, B subunit [Thermotoga sp. RQ2]
          Length = 636

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/651 (40%), Positives = 381/651 (58%), Gaps = 24/651 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + Y A SI++L+GLEPVRMRPGMYIG T ++ LHHL  EV+DN++DEV+AGY + I V+L
Sbjct: 2   EKYSAESIKVLKGLEPVRMRPGMYIGSTGKRGLHHLVYEVVDNSVDEVLAGYCDWIRVTL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G + V DNGRGIPV+ HP+   +S LE++ T LHAGGKF   +Y+ISGGLHGVG+SV
Sbjct: 62  HEDGSVEVEDNGRGIPVDIHPE-EGRSALEVVFTVLHAGGKFSKDSYKISGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+ L V V R   I+ Q++ RG P++P+E   +  +K GT + F+PDP IF +   
Sbjct: 121 VNALSEWLEVRVHRDGKIYRQRYERGKPVTPVEVIGET-DKHGTIVRFKPDPLIFSET-E 178

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L    +  A+L   +K  +       +K        F F GG+  Y++     + 
Sbjct: 179 FDPDILEHRLREIAFLVPGLKIEFEDRINGEKKT-------FKFDGGIVEYVKYLNRGKK 231

Query: 282 LISSEIFTGKTEK----KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            +   I   +TEK     G     VE A  + +    +I S+ NTI T +GGTH +  + 
Sbjct: 232 ALHDVIHIKRTEKVKTKNGEDEVIVEIAFQYTDSYSEDIVSFANTIKTVDGGTHVTAFKS 291

Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            LTR + +Y +     K+  S   +D+      ++SV+++ PEF GQTK+KL + + +  
Sbjct: 292 TLTRLMNEYGKKHNFLKKDDSFQGEDVREGLTAVISVYVKNPEFEGQTKSKLGNEEVKEA 351

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLA 454
           V  A+R+        NP     +L  ++   + R   ++ RE+  RK  ++   LPGKLA
Sbjct: 352 VTKAMREELKKIFDANPELVKTILSKIMSTKQAREAAKRAREMVRRKNVLQNTTLPGKLA 411

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS      TELFIVEGDSAGGSAKQAR+R  QAVLP+RGKILNV  +  +++  N+QI 
Sbjct: 412 DCSSTHREKTELFIVEGDSAGGSAKQARDREFQAVLPIRGKILNVEKSSLDRLLKNEQIS 471

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           D++ A+G      + E  LRY ++IIMTDAD+DGAHI +LLLT FY+ M  LIEQ  +++
Sbjct: 472 DIIVAVGTGIGDDFDESKLRYGRIIIMTDADIDGAHIRTLLLTLFYRYMRPLIEQGRVYI 531

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL+RI  G +  Y + ++   +  E+ +     +IEI R+KGLGEM   QL ET M+
Sbjct: 532 ALPPLYRIKAGREEFYVYSDQELAEYKEKLQG---KRIEIQRYKGLGEMNPEQLWETTMN 588

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              R ++RV I       ++       LMG     R +FI+  A  + ++ 
Sbjct: 589 PETRKIIRVTIED----AEEADRLFEILMGNDPSSRREFIERHALKVKELD 635


>gi|307243405|ref|ZP_07525562.1| DNA gyrase, B subunit [Peptostreptococcus stomatis DSM 17678]
 gi|306493215|gb|EFM65211.1| DNA gyrase, B subunit [Peptostreptococcus stomatis DSM 17678]
          Length = 635

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/647 (40%), Positives = 379/647 (58%), Gaps = 21/647 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y A  I++LEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AG  + I +S++
Sbjct: 5   EYGADQIQVLEGLEAVRKRPGMYIGSTGPRGLHHLVYEVVDNSIDEALAGNCSEIYISIN 64

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G +TV D+GRGIPVE HPK    STLE +LT LHAGGKF    Y++SGGLHGVG+SVV
Sbjct: 65  PDGSVTVKDDGRGIPVEVHPK-TGLSTLETVLTVLHAGGKFGGGGYKVSGGLHGVGVSVV 123

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALSD L   V+R   ++ Q++ RG+P   LE   +     GT ITF PD  IF +   F
Sbjct: 124 NALSDWLVAEVSRDGKVYRQEYKRGVPTGKLEVVSESSKDSGTSITFMPDASIFDEI-EF 182

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L    +  ++L+  +K  +   +E  E+        F++ GGL  Y++     ++ 
Sbjct: 183 KYETLEYRFRELSFLNKVIKIEFEDKREGQEESKT-----FHYTGGLVEYIKYLNRTKTP 237

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           I  +I       K  +  T+E A+ + +     I S+ N I T EGG H SG + ALT+ 
Sbjct: 238 IHDQIIYV---DKIANDCTIELALQYTDAYTENIYSFANNINTHEGGVHLSGFKAALTKC 294

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +  YA       ++  ++  +D+      I+SV + +P+F GQTKTKL +   +  V++ 
Sbjct: 295 VNDYARRNNILKEKDPNLSGEDIREGLTAIVSVKLPDPQFEGQTKTKLGNTFMRGLVDSI 354

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
             +    +L +NP  A  ++E  +     R   +K R+   RK A+    LPGKLADCS+
Sbjct: 355 ANEEIGAFLEENPSVAKLVIEKCLRAQRAREAAKKARDLTRRKNALEFTSLPGKLADCSE 414

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+F+VEGDSAGGSAK  R+R+ QA+LPLRGKILNV  +  +KI ++++I +++ 
Sbjct: 415 KSPEKSEIFLVEGDSAGGSAKSGRDRNIQAILPLRGKILNVEKSRLDKILSSEEIKNMIT 474

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A GC     +  E LRY K++IMTDADVDGAHI +LLLTFF++ M  LIE  +++   PP
Sbjct: 475 AFGCGIGEDFEPEKLRYHKIVIMTDADVDGAHIRTLLLTFFFRYMRPLIEGGYVYAAQPP 534

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           LF++ +G K  YA  +     +L+E    G+   ++SR+KGLGEM A QL ET MD   R
Sbjct: 535 LFKVKKGKKEYYAFSDNELSSLLDEV---GRQGADVSRYKGLGEMNAEQLWETTMDPESR 591

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           TLL+V I+  +       +  + LMG K   R  FI+  A ++ ++ 
Sbjct: 592 TLLQVTIDDAIM----ADEIFSMLMGDKVAPRRDFIEANAKYVTNLD 634


>gi|284161217|ref|YP_003399840.1| DNA gyrase subunit beta [Archaeoglobus profundus DSM 5631]
 gi|284011214|gb|ADB57167.1| DNA gyrase, B subunit [Archaeoglobus profundus DSM 5631]
          Length = 632

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/654 (40%), Positives = 385/654 (58%), Gaps = 25/654 (3%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
           P  +   A  +Y A +I +L+ ++ VR RPGMY+G T  +  HHL  E++DN++DE +AG
Sbjct: 2   PISSTFLAMSDYTAEAIEVLDDIQAVRKRPGMYVGSTGSRGFHHLLWEIVDNSIDEALAG 61

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           Y N I V+L  +G  +V DNGRGIPVE HP    K  LEI++T LHAGGKF    Y++SG
Sbjct: 62  YCNRIVVTLHKDGSASVEDNGRGIPVEEHP-IFKKPALEIVMTKLHAGGKFSKKAYKVSG 120

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS+ L V V R   I+ Q++ RG P++PL+   + +   GT+I F+PD
Sbjct: 121 GLHGVGLSVVNALSEWLEVWVKRNGKIYYQRYERGKPVTPLKVVGETKE-TGTKIRFKPD 179

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P+IF  K  FD   + +  +  A+L+  ++     ++         + +EFY   G+  +
Sbjct: 180 PEIFEVK-EFDYDVVAERLRELAFLNKGLRIKLIDER-------TGKVKEFYSEEGIVGF 231

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHE 331
           ++   + + +I +++     EK G     VE A  +  E+   + ++ N I T EGGTH 
Sbjct: 232 VKYLNKGKDVI-TDVVYISGEKNGI---NVEIAFQFTNEDFENLLAFANNIHTIEGGTHV 287

Query: 332 SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           SG R  LTR I +Y +    K+   I   D+      +LSV + EP+F GQTKTKL + D
Sbjct: 288 SGFRAGLTRAINEYGK-KHVKKFTPISGSDIREGLTAVLSVKVPEPQFEGQTKTKLTNSD 346

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
            +  VE+ + + F  +L ++P EA +++E  +   + R   R+ RE+ ++ A   L LPG
Sbjct: 347 VKTVVESLVYNNFLRWLEEHPSEAQRIIEKCLLAMKAREMARRARELVKRKAEISLTLPG 406

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS       ELFIVEG+SAGGSAKQAR+R  QAVLP+RGKI+NV  AG  +   N+
Sbjct: 407 KLADCSSKNVEERELFIVEGESAGGSAKQARDRRFQAVLPIRGKIINVEKAGMLRALKNE 466

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  +  A+G      +    +RY K+IIMTDADVDGAHI +LLLTFFY+ M  LIE   
Sbjct: 467 EIKAIASAIGGGIGKDFDLSKVRYGKIIIMTDADVDGAHIRTLLLTFFYRYMRPLIEAGM 526

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPL+R+ +G K  Y + E+  + +L++      GK E+ RFKGLGEM   QL ET
Sbjct: 527 VYIALPPLYRVKKGDKVYYVYSEKELRDVLKKI-----GKAEVQRFKGLGEMNPEQLWET 581

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           AM+   R L++V I   L      +     LMG   DER +FI   A  + ++ 
Sbjct: 582 AMNPKTRKLVKVTIEDAL----IAEKMFRILMGENVDERKEFILNHAKEVKNLD 631


>gi|210614352|ref|ZP_03290171.1| hypothetical protein CLONEX_02385 [Clostridium nexile DSM 1787]
 gi|210150696|gb|EEA81705.1| hypothetical protein CLONEX_02385 [Clostridium nexile DSM 1787]
          Length = 638

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/650 (40%), Positives = 388/650 (59%), Gaps = 19/650 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S  Y A  I+ILEGLE VR RPGMYIG T  + LHHL  E++DNA+DE +AGY + I VS
Sbjct: 2   SAEYGADQIQILEGLEAVRKRPGMYIGSTSIRGLHHLVYEIVDNAVDEALAGYCDTIFVS 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TV+DNGRGIPV  + K      +E++ T LHAGGKF    Y++SGGLHGVG S
Sbjct: 62  INEDNSITVIDNGRGIPVGINHKA-GLPAVEVVFTVLHAGGKFGGGGYKVSGGLHGVGAS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDK 219
           VVNALS+ L V +  +  ++ Q++ RG  +  L+  ++    K GT++TF PD +IF + 
Sbjct: 121 VVNALSEWLEVEIYNEGKVYKQRYERGKVVYKLKVIDECDAQKTGTKVTFLPDKEIFEET 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             FD   L +  +  A+L+  +K     ++        P ++ F++ GG+K ++Q   ++
Sbjct: 181 V-FDYDTLKQRFREMAFLTKNLKIVLKDER-----PEEPIEKTFHYEGGIKEFVQYLNKS 234

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVAL 338
           ++ +  +I   + EK G     VE A+   +   + T  + N I T EGGTH  G R AL
Sbjct: 235 KTPLYEQIIYCEGEKDGV---AVEVAMQHNDSYSDNTYGFVNNITTPEGGTHVVGFRNAL 291

Query: 339 TRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           T+   +YA   +  +    ++  +D+      I+SV I +P+F GQTK KL + +A+  V
Sbjct: 292 TKTFNEYARKNKLLKDNEPNLSGEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARGAV 351

Query: 397 ENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           +N +    + +L QNP  A   +E  V+ +      R+ +    RK+A+  + LPGKLAD
Sbjct: 352 DNIVSTQLEIFLEQNPNVAKMTVEKSVMAQRAREAARKARDLTRRKSALEGMSLPGKLAD 411

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS       E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV  A  +KI  N +I  
Sbjct: 412 CSDKDPANCEIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDKIYANAEIKA 471

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ A G      +    LRY K+IIMTDADVDGAHI++LLLTF Y+ M +LI++ +++L 
Sbjct: 472 MITAFGTGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPELIKEGYVYLA 531

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+++ +  K  YA+ +E   KIL E  + G  K  I R+KGLGEM A QL ET MD 
Sbjct: 532 QPPLYKLEKNKKVWYAYSDEELNKILLEVGRDGNNK--IQRYKGLGEMDAEQLWETTMDP 589

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             R LLRV +++   S  +   +   LMG K + R +FI+E A +++++ 
Sbjct: 590 EHRILLRVTMDE--ESTSELDLTFTTLMGDKVEPRREFIEENAKYVNNLD 637


>gi|218291098|ref|ZP_03495121.1| DNA gyrase, B subunit [Alicyclobacillus acidocaldarius LAA1]
 gi|218238983|gb|EED06190.1| DNA gyrase, B subunit [Alicyclobacillus acidocaldarius LAA1]
          Length = 637

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/654 (38%), Positives = 372/654 (56%), Gaps = 21/654 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            A++     YD S I +LEGL+ VR RPGMYIG T  K LHHL  E++DNA+DE +AG  
Sbjct: 1   MADRIPEQVYDESQIEVLEGLQAVRKRPGMYIGSTSAKGLHHLVWEIVDNAVDEALAGRC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             I V +  +  +TV+DNG G PV  HPK   +  +E +LTTLHAGGKF    Y++SGGL
Sbjct: 61  TRIVVQVHPDNSVTVIDNGAGFPVGIHPK-TGRPAVETVLTTLHAGGKFGGKGYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS+ + V V R   I+ Q++ RG PL  L+      +K GT+++F+PDP+
Sbjct: 120 HGVGASVVNALSEWMRVEVHRDGRIYVQEYERGTPLYDLKVIG-TTDKTGTKVSFKPDPE 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   F A  L+   +  A+L+  ++  +  ++E        ++  F + GG+  +++
Sbjct: 179 IFTETTVFSAETLMNRLRELAFLNAGLEIVFEDERE------GGKRAVFKYDGGVAEFVR 232

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESG 333
              +++ ++  +       K       VE A+ + +       S+ N I T EGGTHE+G
Sbjct: 233 WLNQSKDVLFDDPIYVSAVKDDV---AVEIALQYNDGYNATVYSFANNINTAEGGTHEAG 289

Query: 334 LRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            + ALTR I  YA      +    S+  DD+      ++SV + EP+F GQTKTKL + +
Sbjct: 290 FKSALTRVINDYARRYGFLKSNDNSMTGDDVREGLTAVVSVKVPEPQFEGQTKTKLGNSE 349

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
            +  VE    +    +L +NP  A K+++  I  +  R   R+ RE+ R   +    LPG
Sbjct: 350 VRGIVETLFAERMQMFLEENPSIARKIVDKCILAARAREAARRARELTRSKKMDVTSLPG 409

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL DCS      +ELF+VEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +K+  N+
Sbjct: 410 KLTDCSSKDPERSELFLVEGDSAGGSAKMGRDPQTQAILPLRGKIINVEKARLDKVLANE 469

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++ A G      +     RY K++IMTDAD DG+HI  LLLT FY+ M  LI+  +
Sbjct: 470 EIRAIITACGTGIGDDFDISKARYHKIVIMTDADHDGSHIRILLLTLFYRFMRPLIDAGY 529

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPL++I +G    YA+ +   ++IL+E  + G   + + R+KGLGEM A QL ET
Sbjct: 530 IYIAQPPLYKIEKGKVVRYAYSDAQLEQILQEMGREG---VRLQRYKGLGEMNADQLWET 586

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   RTLLRV +   +    D     + LMG K + R  FI E A F+ ++ 
Sbjct: 587 TMDPESRTLLRVTMEDAM----DADMIFSILMGDKVEPRRDFIAEHARFVRNLD 636


>gi|331086961|ref|ZP_08336037.1| DNA gyrase subunit B [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330409622|gb|EGG89061.1| DNA gyrase subunit B [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 638

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/650 (40%), Positives = 389/650 (59%), Gaps = 19/650 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S  Y A  I+ILEGLE VR RPGMYIG T  + LHHL  E++DNA+DE + GY + I VS
Sbjct: 2   STEYGADQIQILEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNAVDEALGGYCDTIFVS 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TV+DNGRGIPV  + K      +E++ T LHAGGKF    Y++SGGLHGVG S
Sbjct: 62  INKDNSITVIDNGRGIPVGINHKA-GLPAVEVVFTVLHAGGKFGGGGYKVSGGLHGVGAS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDK 219
           VVNALS  L V +  +  I+ Q++ RG     L+   +   +K GT++TF PD +IF + 
Sbjct: 121 VVNALSVWLEVEIYNEGKIYKQRYERGKSAYQLKVVGECEADKTGTKVTFLPDAEIFEET 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             FD   L +  +  A+L+  +K   + ++          ++ F++ GG+K ++Q   ++
Sbjct: 181 -EFDYNILKQRFREMAFLTKNLKIVLADER-----PEERIEKTFHYEGGIKEFVQYLNKS 234

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVAL 338
           ++ +  +I   + +K G     VE A+   +   + T  + N I T EGGTH  G R AL
Sbjct: 235 KTPLYEQIIYCEGQKDGV---AVEVAMQHNDSYTDNTYGFVNNITTPEGGTHVVGFRNAL 291

Query: 339 TRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           T+   +YA   +  +    ++  +D+      I+SV I++P+F GQTK KL + +A+  V
Sbjct: 292 TKTFNEYARKNKLLKDSEPNLSGEDIREGLTAIISVKIQDPQFEGQTKQKLGNSEARGAV 351

Query: 397 ENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           ++ L    + +L QNP  A  ++E  V+ +      R+ +    RK+A+  + LPGKLAD
Sbjct: 352 DSVLSTQLEIFLEQNPQVAKVVIEKSVLAQRAREAARKARDLTRRKSALEGMSLPGKLAD 411

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS+  A   E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV  A  +KI  N +I  
Sbjct: 412 CSEKDASKCEIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDKIYANAEIKA 471

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ A G      +    LRY K+IIMTDADVDGAHI++LLLTF Y+ M +LI+Q +++L 
Sbjct: 472 MITAFGTGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPELIKQGYVYLA 531

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+++ +  K  YA+ +E   KIL+E  + G  K  I R+KGLGEM A QL ET MD 
Sbjct: 532 QPPLYKLEKNKKVWYAYSDEELNKILQEVGRDGNNK--IQRYKGLGEMDAEQLWETTMDP 589

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             R LLRV +++   S  +   +   LMG K + R +FI+E A ++ ++ 
Sbjct: 590 EHRVLLRVTMDE--ESSSELDLTFTTLMGDKVEPRREFIEENAKYVQNLD 637


>gi|330507223|ref|YP_004383651.1| DNA gyrase subunit B [Methanosaeta concilii GP-6]
 gi|328928031|gb|AEB67833.1| DNA gyrase, B subunit [Methanosaeta concilii GP-6]
          Length = 630

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/645 (41%), Positives = 383/645 (59%), Gaps = 25/645 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YDAS I++LEGLE VR RP MYIG TD   LHHL  EV+DN++DE + G+ + I+V+++ 
Sbjct: 7   YDASHIQVLEGLEAVRRRPSMYIGSTDSLGLHHLVYEVVDNSVDEALGGFCSEIDVTINP 66

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
            G +++ D+GRGIPV+NHP+F N+  LEI+LT LHAGGKFD+ +Y +SGGLHGVG+SVVN
Sbjct: 67  GGSVSIRDDGRGIPVDNHPQF-NRPALEIVLTVLHAGGKFDHESYGVSGGLHGVGVSVVN 125

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS+ + V V R   I+ Q+F +G  +S LE++    +  GT ITF+PD  IF +   F 
Sbjct: 126 ALSEWMEVQVRRNGRIYWQRFEKGKVVSDLEERG-SSDHTGTTITFKPDTSIFEET-EFS 183

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L    +  A+L+  +K     D+   E         F + GG+ ++++   +N+ ++
Sbjct: 184 FDTLSSRLRELAFLNRGLKITIKDDRSDKEN-------IFQYAGGIISFVEYLNKNKEVL 236

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
             +       K GT    VE A+ +       I SY N I T EGGTH  G R ALTR +
Sbjct: 237 HEQPVYFSRSKNGTQ---VEVALQYNNSYAENIFSYANIINTREGGTHLMGFRAALTRTV 293

Query: 343 KKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
             YA   +  K  + +  +DL    V ++SV + +P+F GQTKT+L +   +  VE+ + 
Sbjct: 294 NDYARNNKLFKNEMKLGGEDLREGLVAVISVKLPDPQFEGQTKTRLGNSSIRGIVESMVA 353

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNI 460
           +    Y  +NP+ AT ++E   E    R   RK +E   RK A+    LPGKLADCS N 
Sbjct: 354 EGLGEYFEENPLVATTIVEKAAEAMRAREAARKAKELTRRKNALSSGGLPGKLADCSDND 413

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
               E++IVEG+SAGGSAKQ RNR  QA+LPLRGKILNV  A  +KI  N +I +++ A 
Sbjct: 414 PAKCEIYIVEGESAGGSAKQGRNRHFQAILPLRGKILNVERARLDKILKNAEIRNMIVAF 473

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           G      +     RY KV+IMTDADVDG+HI +LLLTFFY+ M  LI+  ++F+  PPL+
Sbjct: 474 GTGVGDDFDISKARYHKVVIMTDADVDGSHIRTLLLTFFYRYMRPLIDAGYVFIAQPPLY 533

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           ++ +G ++ YA+ +E   +++      G  K  I R+KGLGEM   QL ET MD   R +
Sbjct: 534 QVKKGKQANYAYSDEQLNELVA-----GMNKPVIQRYKGLGEMNPEQLWETTMDPEGRIM 588

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           LRV +   +    +       LMG + + R +FI++ A ++ ++ 
Sbjct: 589 LRVTLEDAV----EADRIFTILMGDQVEPRREFIEKHAKYVKNLD 629


>gi|193211690|ref|YP_001997643.1| DNA gyrase subunit B [Chlorobaculum parvum NCIB 8327]
 gi|193085167|gb|ACF10443.1| DNA gyrase, B subunit [Chlorobaculum parvum NCIB 8327]
          Length = 647

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/662 (39%), Positives = 382/662 (57%), Gaps = 25/662 (3%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
           ++     Q+A+++Y A++I++L+G+E VR RP MYIG    + LHHL  E++DN++DE +
Sbjct: 3   ETDIQTAQNAANDYGATNIQVLDGIEHVRKRPAMYIGDIHSRGLHHLVYEIVDNSIDETL 62

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AG+ + I V+++ +G +TV D GRGIPV+ HP    KS LE+++T + AGGKFD   Y++
Sbjct: 63  AGFNDYIHVAMNPDGSVTVTDRGRGIPVDIHP-VKKKSALELVMTVIGAGGKFDKGAYKV 121

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG SVVNALS+     V R   IF Q + RG+P   +E+     +++GT++TF+
Sbjct: 122 SGGLHGVGASVVNALSEWCEAEVYRDGKIFRQTYKRGVPQGGVEEVG-TTDQKGTKVTFK 180

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PDP IF     F    ++   +  A+L+  ++      +   E         F+F GGL+
Sbjct: 181 PDPDIF-KITEFRKDIIIDRMRELAFLNSNLRIIVQDAEGFEET--------FHFEGGLR 231

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++    NR  +  E      E++ T    VE A+ + +     + SY N I T EGGT
Sbjct: 232 EFVRFTDANRLSLLKEPIFLSGERESTM---VEIALQYNDSYQENVFSYVNNINTHEGGT 288

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R ALTR +  YA+     + + I    DD       ++SV + EP+F GQTKTKL
Sbjct: 289 HVTGFRKALTRTLNAYAQKNDLLKNVKITLTGDDFKEGLTAVISVKVPEPQFEGQTKTKL 348

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
            + + Q  VE  + +    +   NP     ++E V   +  R   RK +E   RK+ +  
Sbjct: 349 GNSETQSIVETIVNEQLAEFAESNPGTLKLIIEKVKGAAISREAARKAKELTRRKSVLES 408

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADCS N     EL+IVEGDSAGGSAKQ R+RS QA+LPL+GKILNV  A   K
Sbjct: 409 SGLPGKLADCSINDPDHCELYIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKARLHK 468

Query: 507 IRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           +  N++I  ++ ALG     +    E LRY K+IIMTDADVDGAHI +LLLTFF++ M  
Sbjct: 469 MLENEEIKTIILALGTSIGEEEFSPEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYMRS 528

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKK--HGKGKIEISRFKGLGEM 623
           LIE   +F+  PPL+ +  G +  YA DEE +  I E+ KK   GK  + I R+KGLGEM
Sbjct: 529 LIEAGKVFIAQPPLYLVKAGREQQYAWDEEERASITEQMKKLQKGKANVSIQRYKGLGEM 588

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
              QL  T MD   R+LL+V +   +    +     + LMG K + R  FI++ A ++  
Sbjct: 589 NPEQLWSTTMDPEHRSLLQVTVENAM----EADQVFSTLMGDKVEPRRNFIEQNAKYVRR 644

Query: 684 VG 685
           + 
Sbjct: 645 LD 646


>gi|78707357|gb|ABB46484.1| DNA gyrase subunit B [Acholeplasma laidlawii]
          Length = 631

 Score =  641 bits (1653), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/645 (39%), Positives = 386/645 (59%), Gaps = 20/645 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y A +I+ILEGLE V+ RPGMYIG T E+ LHHL  E++DN++DE + GYA+ I + +  
Sbjct: 5   YTADNIQILEGLEAVKKRPGMYIGSTGERGLHHLVWEIVDNSIDEALGGYADEITIEILK 64

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
              + V DNGRGIPV+ HPK   +  +E ILTTLHAGGKFD  +Y++SGGLHGVG SVVN
Sbjct: 65  GEVIRVTDNGRGIPVDIHPK-TKRPAVETILTTLHAGGKFDKGSYKVSGGLHGVGASVVN 123

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
            LS+   V + +  TI+ QK+ RGIP   L+ K    +K GT I+F+ DP IF +   ++
Sbjct: 124 GLSEWFVVEIHKDGTIYEQKYERGIPAYDLKVKGST-DKSGTIISFQADPLIFTETVIYN 182

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L    Q  A+L+  +K     D+     +   + E F++ GG+  Y++   +++S I
Sbjct: 183 YETLRTRIQQLAFLNKGLKLNLIDDR-----FEENKSESFHYEGGITEYVKFLNQSKSKI 237

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALTRGI 342
            ++I     E+ G    TVE A+ + +        + N I T EGG HE G ++ALTR I
Sbjct: 238 HNDIIYIDKEQDGI---TVELAMQFVDSYSPNLHSFTNNISTTEGGMHEDGFKMALTRVI 294

Query: 343 KKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRD 402
            KYA+  + K+  SI  +D       I+SV   EP+F GQTKTKL + + +        +
Sbjct: 295 SKYADDLKMKKDDSISGEDTREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAITSQITSE 354

Query: 403 PFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIA 461
             + +L++NP +A  ++E V+  +  R+  RK ++   RK+ +  L    KLADC     
Sbjct: 355 AIERFLMENPAQAKAIVEKVLLATRARVAARKAKDLTRRKSPLDALGFASKLADCRSKDP 414

Query: 462 HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
             +E++IVEGDSAGGSAKQ R+   QA++PLRGK+LNV  A  +K+ +N++I++L+QA+G
Sbjct: 415 EKSEIYIVEGDSAGGSAKQGRDSEFQAIMPLRGKVLNVEKARLDKMLSNKEIVNLIQAMG 474

Query: 522 CRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581
                ++     RY K++IMTDADVDGAHI +LLLTF ++ M  LI+  +++   PPL++
Sbjct: 475 TGISDEFDITKARYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYK 534

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I+ G    YA++E+   ++L+  +     K  I R+KGLGEM A QL +T MD  KRTLL
Sbjct: 535 ISWGRNFQYAYNEQELNELLKTIE----TKPSIQRYKGLGEMDAEQLWDTTMDPAKRTLL 590

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           ++++   +    +     + LMG + + R  FIQ+ A +  D+  
Sbjct: 591 QIKLEDAI----EADQVFSMLMGEEVEPRKDFIQKNAQYATDIDA 631


>gi|320159847|ref|YP_004173071.1| DNA gyrase subunit B [Anaerolinea thermophila UNI-1]
 gi|319993700|dbj|BAJ62471.1| DNA gyrase subunit B [Anaerolinea thermophila UNI-1]
          Length = 639

 Score =  641 bits (1653), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/654 (40%), Positives = 385/654 (58%), Gaps = 22/654 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
               + +Y A  I++LEGLE VR RPGMY+GGTD KALHHL  EV+DN++DE +AG  + 
Sbjct: 2   ATPVNTSYGAKDIQVLEGLEAVRRRPGMYVGGTDLKALHHLVYEVVDNSIDEALAGACDH 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+V++  +  +TV DNGRGIPV+ HP+   KS LE+++T LHAGGKF + +Y++SGGLHG
Sbjct: 62  IQVTIHPDSSVTVEDNGRGIPVDIHPE-KQKSALEVVMTVLHAGGKFGSGSYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKI 215
           VG+S VNALS+   V V R   +  Q++ RG+P+ P++   K + N+ GT+ TFR DP I
Sbjct: 121 VGVSAVNALSEWCEVEVRRDGKVHFQRYERGVPVEPVKVIGKCKPNETGTKTTFRFDPTI 180

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     +    L++  +  A+++ +V      ++   E         FYF GG+ ++++ 
Sbjct: 181 FKGDLDYKFDTLVQRFREMAFVTRKVTIRLIDERASRE-------MSFYFEGGITSFVRY 233

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              NR ++   +   + E +G     +E AI + +     + S+ NTI T +GGTH +GL
Sbjct: 234 LNRNREVLHPVV-YAEKEVEGV---GIEAAIQYTDAYAESVYSFANTINTIDGGTHLTGL 289

Query: 335 RVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R A+TR I  YA      +    +   DD       I+SV   +P+F  QTK KL++ + 
Sbjct: 290 RAAITRVINDYARRNNFLKDGDPNFSGDDTREGLTAIVSVKHPDPQFESQTKVKLMNPEV 349

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
           Q  V+  + + F  +L +NP  A  +++  +  +  R   RK R+ V RK+ +  L LPG
Sbjct: 350 QTYVQQVVGEAFSTFLEENPQAAKAIIQKCLTSARARDAARKARDLVIRKSTLESLTLPG 409

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS+     TEL+IVEGDSAGGSAKQ R+R  QAVLPLRGKILN   A  +KI +N 
Sbjct: 410 KLADCSERDPSKTELYIVEGDSAGGSAKQGRDRHFQAVLPLRGKILNTERARLDKILSNN 469

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++  L+ ALG      +    LRY +VIIMTDADVDG+HI +LLLTFF++ M  LIE  H
Sbjct: 470 EVKALISALGTGIGDSFDLSGLRYGRVIIMTDADVDGSHIRTLLLTFFFRYMLPLIEDGH 529

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           LF+  PPL+RI    +  YA+ +  + +IL+E     + K  I R+KGLGEM  +QL ET
Sbjct: 530 LFIAQPPLYRIAYKNQVRYAYTDADRDRILKELGITPE-KASIQRYKGLGEMNPTQLWET 588

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            M+   RTLL V +            + + LMG     R KFIQ  A  + ++ 
Sbjct: 589 TMNPENRTLLMVTVED----AAAADRTFDMLMGAAVPPRTKFIQTHARDVRNLD 638


>gi|260891935|ref|YP_003238032.1| DNA gyrase, B subunit [Ammonifex degensii KC4]
 gi|260864076|gb|ACX51182.1| DNA gyrase, B subunit [Ammonifex degensii KC4]
          Length = 636

 Score =  641 bits (1652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/654 (39%), Positives = 386/654 (59%), Gaps = 23/654 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              +   + Y ASSI+ILEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AG+ 
Sbjct: 2   PQEEKEREEYRASSIQILEGLEAVRRRPGMYIGSTGPRGLHHLVYEVVDNSIDEALAGFC 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             IEV +  +  + V DNGRGIPV+ HP+   +  +E++LTTLHAGGKF    Y++SGGL
Sbjct: 62  TEIEVVIKQDNSVLVKDNGRGIPVDIHPQA-GRPAVEVVLTTLHAGGKFGGGGYKVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS+ L V V R+  I+ Q+F RG P++ LE   +  ++ GT + F+PD +
Sbjct: 121 HGVGVSVVNALSEWLEVEVHREGRIWRQRFERGRPVTDLEAIGET-DRTGTTVHFKPDHQ 179

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   F    L +  +  ++L   V+     ++   E         F+  GGL+ +++
Sbjct: 180 IFEEVV-FSQDYLTQRLRELSFLVPEVRIVLRDERTGEE-------FVFHHKGGLRDFVR 231

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
                R ++  +      E++G     VE A+ + +     I SY NTI T +GGTHE+G
Sbjct: 232 HLNRAREVLHPDPIYLAGEREG---MVVEAALQYHDGYAESIFSYANTIRTVDGGTHEAG 288

Query: 334 LRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
            + ALTR +  Y            +  +D+      +++V + +P+F GQTKTKL +   
Sbjct: 289 FKAALTRVVNDYGRRHGIIPENFQLAGEDVREGLTAVVAVKVPDPQFEGQTKTKLGNTQV 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPG 451
           +R VE+ + +    +  +NP  A  ++E  +  +  R   R+ RE+ R+  +     LPG
Sbjct: 349 RRVVESIVGEGLASFFEENPSIARLIVEKALAAARAREAARRARELARRKGLLESTSLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS+     TEL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI  N+
Sbjct: 409 KLADCSERDPAKTELYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKILANE 468

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  L+ A+G         + +RY K+IIMTDADVDGAHI +LLLTFF++ M  LIE  +
Sbjct: 469 EIKALITAIGAGIGEDLDLKKVRYHKLIIMTDADVDGAHIRTLLLTFFFRYMRPLIEAGY 528

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPL+R+ +G +S YA+++   +K+L    ++G   + I R+KGLGEM A QL ET
Sbjct: 529 VYIAQPPLYRVRKGKESFYAYNDAELEKLLSTLGRNG---VTIQRYKGLGEMNAEQLWET 585

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            M+  KR +L+V +   +       +  + LMG K + R +FI   A ++ ++ 
Sbjct: 586 TMNPEKRVILQVTLEDAV----AADELFSTLMGDKVEPRREFISRYARYVRNLD 635


>gi|253582585|ref|ZP_04859806.1| DNA topoisomerase [Fusobacterium varium ATCC 27725]
 gi|251835455|gb|EES63995.1| DNA topoisomerase [Fusobacterium varium ATCC 27725]
          Length = 635

 Score =  640 bits (1651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/649 (40%), Positives = 377/649 (58%), Gaps = 20/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S+NY A +I +LEGLE VR RPGMYIG T E+ LHHL  E++DNA+DE +AGY + I V+
Sbjct: 2   SNNYQAENITVLEGLEAVRKRPGMYIGTTSERGLHHLVWEIVDNAVDEALAGYCDKIVVN 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  + V+DNGRGIPV  HPK+ NKS LEI+LT LHAGGKF+N  Y++SGGLHGVG+S
Sbjct: 62  ILPDNIIEVIDNGRGIPVGIHPKY-NKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGVS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS    VTV     I+ QK++RG+P   +++        GT + F+ D +IF    
Sbjct: 121 VVNALSLWTDVTVKTDGKIWYQKYNRGVPEEDVKEIGVTTEH-GTTVRFKADHEIFETLI 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +D   L    +  AYL+  ++   S  ++   K      EEF F GG+  +L+   E  
Sbjct: 180 -YDYNTLKNRLKELAYLNKGLEIHLSDSRKEPYKK-----EEFKFEGGIVDFLKEITEET 233

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALT 339
             +  E      E        V+ A  +   ++  I S+ N I T EGGTH SG R ALT
Sbjct: 234 EKLIPEPIYMTGEVDNV---AVDIAFLYTVNQSEIIYSFVNNINTHEGGTHVSGFRTALT 290

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I    +      ++   +  +D+      I+SV + +P+F GQTKTKL + +    V 
Sbjct: 291 RVINDVGKAQGYLKEKDGKLQGNDIREGVTAIVSVKVPQPQFEGQTKTKLGNSEVTGIVS 350

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADC 456
             +       L  NP +   ++E ++   + R   +K RE+  + + +    LPGKLADC
Sbjct: 351 TLVGTNLKIVLEDNPNDTKIIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADC 410

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S       E++IVEGDSAGGSAKQ R+RS+QA+LPLRGKILNV  AG  K   N ++  +
Sbjct: 411 SSKNPDECEIYIVEGDSAGGSAKQGRDRSHQAILPLRGKILNVEKAGLHKSLENNEVRAM 470

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A G      +  E LRY K+I+MTDADVDGAHI +LLLTF Y+ M DLI   ++++  
Sbjct: 471 ITAFGTSIGDSFNIEKLRYGKIILMTDADVDGAHIRTLLLTFIYRFMVDLIYNGNVYIAQ 530

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL++IT G +  YA+ +   ++I + F+   K K  + R+KGLGEM   QL ET M+ +
Sbjct: 531 PPLYKITTGKQIRYAYSDRELKEITDVFEGDDK-KYTLQRYKGLGEMNPEQLWETTMNPD 589

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            RTLL+V I+      +      +KLMG K D R +FI+E A ++ ++ 
Sbjct: 590 TRTLLQVTIDD----ARAADMLFDKLMGDKVDPRREFIEENAVYVKNLD 634


>gi|313894727|ref|ZP_07828288.1| DNA gyrase, B subunit [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312976636|gb|EFR42090.1| DNA gyrase, B subunit [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 684

 Score =  640 bits (1651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/685 (37%), Positives = 380/685 (55%), Gaps = 32/685 (4%)

Query: 14  PQSQGSSEKLKKSGEIPDSPAFANQSAS---------DNYDASSIRILEGLEPVRMRPGM 64
           P +    ++  +  + PD    A  +            +Y A  I++LEGLE VR RPGM
Sbjct: 18  PLTPEEMKEAAEMADAPDLSGIAISAEEMGADVTAVDADYGAGQIQVLEGLEAVRKRPGM 77

Query: 65  YIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKF 124
           YIG T E+ LHHL  EV+DN++DE +AGY + + V++  +  +TVVDNGRGIPV+ H   
Sbjct: 78  YIGSTSERGLHHLVYEVVDNSIDEALAGYCDTVAVTIHRDNSITVVDNGRGIPVDMHE-- 135

Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184
                +E++LT LHAGGKF    Y++SGGLHGVG+SVVNALS  + V V R   I+   F
Sbjct: 136 SGMPAVEVVLTVLHAGGKFGGDGYKVSGGLHGVGVSVVNALSSSMDVQVRRDGHIYEIAF 195

Query: 185 SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244
           +RG     L +        GTR+ F PDP+IF     +    L    +  A+L+  +   
Sbjct: 196 ARGNTTEKLHEVG-TSETTGTRVHFVPDPEIFTVTT-YSFETLKHRLRELAFLNHGITIT 253

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
            + ++           E F+F GG+++++      +  I+ E       K  T    VE 
Sbjct: 254 LTDER-----GEELRSETFHFDGGIRSFVSHLNRKKETINEEPIYFNGVKDDT---VVEI 305

Query: 305 AIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDD 361
           A+ + +     I S+ N I T+EGGTH +G ++ALTR    +A       ++  ++  +D
Sbjct: 306 AMQYNDSYQENIYSFVNNINTEEGGTHLAGFKIALTRAANDFARRLSVLKEKDGNLSGED 365

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
           +      ++S+ +REP+F GQTKTKL + + +  V++ + +    Y  +NP    K+L+ 
Sbjct: 366 VREGLTAVISLKVREPQFEGQTKTKLGNSEVRGIVDSIVTEGLTEYFEENPNVTKKVLDK 425

Query: 422 VIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
            +  S  R   RK RE   RK A+    LPGKLADCS       E++IVEGDSAGGSAKQ
Sbjct: 426 ALMASRAREAARKARELTRRKNALEVSSLPGKLADCSVKDPDQCEIYIVEGDSAGGSAKQ 485

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            R+R  QA+LPLRGKILNV  A  +KI  N +I  ++ A G     ++     RY K+II
Sbjct: 486 GRDRRFQAILPLRGKILNVEKARLDKIFANAEIRTMITAFGTGIGEEFDLSKRRYSKIII 545

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKI 600
           MTDADVDGAHI +LLLTFFY+ M  L++  H+++  PPL++I +  K  Y + +E + K 
Sbjct: 546 MTDADVDGAHIRTLLLTFFYRYMRPLVDHGHVYIAQPPLYQIRKDKKHFYTYTDEEQAKK 605

Query: 601 LEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660
           L+E  + G   + I R+KGLGEM   QL ET M+ ++RT+LRV         +   +   
Sbjct: 606 LDEIGRDG---VTIQRYKGLGEMNPEQLWETTMNPSERTMLRV----AAEDAEAADELFT 658

Query: 661 KLMGTKADERFKFIQERASFIDDVG 685
            LMG K + R +FI+E A  + ++ 
Sbjct: 659 ILMGDKVEPRRQFIEENARLVRNLD 683


>gi|147676340|ref|YP_001210555.1| type IIA topoisomerase, B subunit [Pelotomaculum thermopropionicum
           SI]
 gi|146272437|dbj|BAF58186.1| type IIA topoisomerase, B subunit [Pelotomaculum thermopropionicum
           SI]
          Length = 643

 Score =  640 bits (1651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/657 (40%), Positives = 391/657 (59%), Gaps = 24/657 (3%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
               + + +  Y A  I+ILEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AG
Sbjct: 6   TGDTSNNNNSKYGAEEIQILEGLEAVRRRPGMYIGSTSARGLHHLVYEVVDNSIDEAMAG 65

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           + + IEV L+ +G  TV+DNGRGIPV+ HPK   +  +E+++T LHAGGKF    Y++SG
Sbjct: 66  FCDRIEVILNEDGSATVIDNGRGIPVDIHPK-TGRPAVEVVMTMLHAGGKFGGGGYKVSG 124

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS  L V V R   ++ Q++SRGIP++ L  K K     GT++TF PD
Sbjct: 125 GLHGVGVSVVNALSLWLEVEVKRDGKVYYQRYSRGIPVTGLLVKGKSS-ATGTKVTFMPD 183

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P+IF D   F+   L +  +  ++L+  VK      +   E         F   GG+  +
Sbjct: 184 PEIFEDLI-FNQDILAQRLRELSFLNMGVKIILKDRRSGQETV-------FQHDGGIMDF 235

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++   ++++ +  +    + +K       VE A+ + +     I SY N I T +GGTHE
Sbjct: 236 VRYLNKSKTPLHGKPIYIQKQKDDVL---VEVALQYTDTYVESILSYANNINTIDGGTHE 292

Query: 332 SGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G + ALTR I  Y       +    ++  +D+      ++SV + EP+F GQTKTKL +
Sbjct: 293 AGFKAALTRVINDYGRKYNLLKNGAGNLSGEDIREGLTAVISVKVPEPQFEGQTKTKLGN 352

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448
            + +  V++ + +    +L +NP  A ++LE  +  S  R   RK RE   RK+A+    
Sbjct: 353 SEVRSIVDSVVGEGLGIFLEENPSIARRILEKAVTASRAREAARKARELTRRKSALEGST 412

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS+     +EL++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI 
Sbjct: 413 LPGKLADCSERDPSVSELYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKIL 472

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            N++I  ++ ALG     ++     RY K+I+M+DADVDGAHI +LLLTFFY+ M  LIE
Sbjct: 473 ANEEIRAMITALGTGIGEEFDVSKARYHKIILMSDADVDGAHIRTLLLTFFYRYMRPLIE 532

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           + ++F+  PPL+R+ +G    YA+ +   +K+L++  + G   + I R+KGLGEM A QL
Sbjct: 533 KGYVFIAQPPLYRVKKGKLEKYAYSDAELEKLLDQIGRDG---VSIQRYKGLGEMNAEQL 589

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            ET MD   RT+++V +   +    +     + LMG + + R  FIQE A  + ++ 
Sbjct: 590 WETTMDPETRTVMQVNLEDAI----EADAVFSMLMGDRVEPRRDFIQENARLVRNLD 642


>gi|257062759|ref|YP_003142431.1| DNA gyrase subunit B [Slackia heliotrinireducens DSM 20476]
 gi|256790412|gb|ACV21082.1| DNA gyrase subunit B [Slackia heliotrinireducens DSM 20476]
          Length = 648

 Score =  640 bits (1650), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/657 (38%), Positives = 378/657 (57%), Gaps = 19/657 (2%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +  S +YDA  I++LEGLE VR RPGMYIG T  + LHHL  EV+DNA+DE +AGY   
Sbjct: 2   AEKQSSHYDAGDIQVLEGLEAVRKRPGMYIGSTGTRGLHHLVYEVVDNAVDEALAGYCTK 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+V +  +  +TV+DNGRGIPVE HPK     T+E++LT LHAGGKF    Y++SGGLHG
Sbjct: 62  IDVIIHEDNSITVIDNGRGIPVEKHPK-EKIPTVEVVLTILHAGGKFGGEGYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+S VNALS  L V V R    +   FSRG  +  L +    +      +TF PDP+IF
Sbjct: 121 VGVSCVNALSTRLEVEVCRDGKKYGIAFSRGKTVEKLHQIGTSKTTGT-TVTFWPDPEIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            D   +D   L +  +  A+L+  ++   + +++  E+    + E F + GG+  +++  
Sbjct: 180 TDTLVYDYETLQERFREMAFLNKGLRIELTDERQQDEEG-NFKHETFKYDGGIVDFVKYL 238

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRV 336
            + +  ++  I+       GT    ++W+ ++      I ++ N I T EGGTH  G + 
Sbjct: 239 NQGKETLNKPIYFEAENADGTVEVVMQWSTSYGTNG--IMAFANNINTHEGGTHLDGFKN 296

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA       ++  ++  DD       I+SV + +P+F GQTKTKL +++ + 
Sbjct: 297 ALTRTINDYARSKGLLKEKDKNLTGDDAREGLAAIISVKLHDPQFEGQTKTKLGNVEIRG 356

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKL 453
            V+ A+      YL +NP  A +++    +  + R   RK RE+ R+   +    +PGKL
Sbjct: 357 LVQGAVTKGLSEYLEENPTPAKRIVGKASQALKAREAARKAREMTRRKGVLDSFSMPGKL 416

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS      +E+FIVEGDSAGGSAKQAR+R  QA+LPLRGKILNV  AG  +  ++  I
Sbjct: 417 ADCSSREPALSEMFIVEGDSAGGSAKQARDRKYQAILPLRGKILNVERAGLHRALSSDTI 476

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             L+ A+G      Y  ++ RY ++IIMTDADVDGAHI  LLLTFFY+ M DLI + +++
Sbjct: 477 SSLITAIGTNIGDDYNGDNARYHRIIIMTDADVDGAHIRCLLLTFFYRYMPDLINRGYIY 536

Query: 574 LISPPLFRITQ-----GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           +  PPL+ + +     G    Y +++E K +I+ +       K +I R+KGLGEM   QL
Sbjct: 537 IAQPPLYGLKKKNSASGKILKYIYNDEAKDQIMAQL--EDPDKYDIQRYKGLGEMDPEQL 594

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            ET M+   RTL++V I          + +++ LMG   + R +FIQ+ A  +  + 
Sbjct: 595 WETTMEPETRTLIQVSIED----AAAAERAVSDLMGDDVEPRKEFIQKNALDVRFLD 647


>gi|256419449|ref|YP_003120102.1| DNA gyrase, B subunit [Chitinophaga pinensis DSM 2588]
 gi|256034357|gb|ACU57901.1| DNA gyrase, B subunit [Chitinophaga pinensis DSM 2588]
          Length = 659

 Score =  640 bits (1650), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/662 (40%), Positives = 391/662 (59%), Gaps = 21/662 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
           A   AS  YDA SI++LEGLE VR RP MYIG    K LHHL  EV+DN++DE +AGY  
Sbjct: 8   APTPASSGYDAGSIQVLEGLEAVRKRPAMYIGDIGVKGLHHLVYEVVDNSIDEALAGYCK 67

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  + V D+GRGIP   HPK   +S LE+++T LHAGGKFD +TY++SGGLH
Sbjct: 68  NISVTICEDNSILVTDDGRGIPTGMHPK-EGRSALEVVMTVLHAGGKFDKNTYKVSGGLH 126

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+S VNALSD+LHVTV R+  +F Q++ RG+P   + +     +  GT + F+PD +I
Sbjct: 127 GVGVSCVNALSDKLHVTVRREGKLFEQEYQRGVPQYAVREIG-TSDSTGTTVHFKPDNEI 185

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   ++   L    +  AYL+ ++K   + D+E  E  G    E FY  GG+  ++Q 
Sbjct: 186 FKETI-YNREILAGRLRELAYLNRKIKITLTDDREKDE-AGNSVTETFYSEGGIIEFVQM 243

Query: 276 KLEN--RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
              N  R+ +  +    +     +    VE A+ + +     I SY N I T EGGTH +
Sbjct: 244 LDRNGRRNGLLPDPIFIEAH-DASSNVAVEVAVIYNDSFSENIFSYVNNINTIEGGTHVA 302

Query: 333 GLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R A+TR  K Y +  +   K  I +  DD       I+SV + EP+F GQTKTKL + 
Sbjct: 303 GFRRAITRIFKSYGDKNKMFEKTKIEVTGDDFREGLSAIISVKVPEPQFEGQTKTKLGNS 362

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRL 449
           D    V++++    D YL ++P EA  ++  V+  ++ R   RK R++ ++ + +    L
Sbjct: 363 DVMGVVDSSVAAVLDAYLEEHPREAKIIINKVVLAAQAREAARKARQMVQRKSVLSGSGL 422

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADCS+N     EL++VEGDSAGG+AKQ RNRS QA+LPLRGKILNV  A   KI  
Sbjct: 423 PGKLADCSENDPEKCELYLVEGDSAGGTAKQGRNRSFQAILPLRGKILNVEKAMEHKIYE 482

Query: 510 NQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           N++I ++  ALG    ++  ++      LRY K+IIMTDADVDG+HIA+L+LTF ++ M 
Sbjct: 483 NEEIKNIFTALGVTIGTEEDDKALNLSKLRYHKLIIMTDADVDGSHIATLILTFIFRYMK 542

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
            ++EQ ++++  PPL+ + +  + +YA  EE ++  + +     +  + I R+KGLGEM 
Sbjct: 543 AMVEQGYVYIAQPPLYLVKKSKEQIYAWTEEDRKAAIAKIAGGKEDSVTIQRYKGLGEMN 602

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           A QL ET M+ + RTL +V I     S  +     + LMG +   R +FI+  A +   +
Sbjct: 603 AEQLWETTMNPDNRTLKQVTIE----SAAEADRVFSMLMGDEVPPRREFIESHAKYAK-I 657

Query: 685 GT 686
             
Sbjct: 658 DA 659


>gi|218134381|ref|ZP_03463185.1| hypothetical protein BACPEC_02275 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989766|gb|EEC55777.1| hypothetical protein BACPEC_02275 [Bacteroides pectinophilus ATCC
           43243]
          Length = 638

 Score =  640 bits (1650), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/648 (39%), Positives = 378/648 (58%), Gaps = 18/648 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y A  I+ILEGLE VR RPGMYIG T  + LHHL  E++DNA+DE +AGY   I+V ++
Sbjct: 3   EYGAEQIQILEGLEAVRKRPGMYIGTTSSRGLHHLVYEIVDNAVDEALAGYCTEIDVLIN 62

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV DNGRG+PV+ + K   K  +E++ T LHAGGKF    Y++SGGLHGVG SVV
Sbjct: 63  KDNSITVTDNGRGVPVDINAKA-GKPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGASVV 121

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAG 221
           NALS+ L V V R   I+ Q++ RG  + PL    +    + GT + F PD +IF +   
Sbjct: 122 NALSEWLEVRVKRNGHIYEQRYQRGKVMEPLTIVGECPLEETGTMVHFLPDKEIFTETTV 181

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L +  +  A+L+  +K     ++E  E+  +     F++ GG+K +++   ++++
Sbjct: 182 YEYDILKQRLREMAFLTKGIKIILRDEREGIEQERV-----FHYEGGIKEFVEYLNKSKT 236

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            +  +I   +  K       VE A+   +       ++ N I T EGGTH +G + ALT+
Sbjct: 237 PLYEQIIYCEGVKNNVQ---VEVAMQHNDSYTESTFTFVNNINTPEGGTHLAGFKNALTK 293

Query: 341 GIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
               YA   +  +    ++  DD+      I+SV I +P+F GQTK KL + +A+  V++
Sbjct: 294 TFNDYARANRILKDSDQNLTGDDIREGLTAIVSVKIEDPQFEGQTKQKLGNTEARTAVDS 353

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            + +   ++L QNP  A  + E  +     R   RK R+   RKTA+    LPGKLADC+
Sbjct: 354 VVSEQLTYFLEQNPAVAKAICEKSLLAQRARDAARKARDLTRRKTALESTSLPGKLADCT 413

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                  E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV  A  + +  N +I  ++
Sbjct: 414 DKNPENCEIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARLDHVLGNAEIKAMI 473

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A G      +    LRY K+IIMTDADVDGAHIA+LLLTF Y+ M +LI+Q H++L  P
Sbjct: 474 TAFGTGIHDDFDISKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGHVYLAQP 533

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL++I +  K  YA+ +E    I+ E  +    K  + R+KGLGEM A QL ET MD  K
Sbjct: 534 PLYKIEKNKKVWYAYSDEELNNIMTEIGRDQNNK--VQRYKGLGEMDAEQLWETTMDPEK 591

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           R LLRV ++ D  S  +   +   LMG K + R +FI+  A ++ ++ 
Sbjct: 592 RILLRVNMDDD--SASELDVTFTTLMGDKVEPRREFIETNAKYVKNLD 637


>gi|166367564|ref|YP_001659837.1| DNA gyrase subunit B [Microcystis aeruginosa NIES-843]
 gi|166089937|dbj|BAG04645.1| DNA gyrase subunit B [Microcystis aeruginosa NIES-843]
          Length = 640

 Score =  640 bits (1650), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/651 (39%), Positives = 374/651 (57%), Gaps = 19/651 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + NY A  I++LEGLEPVR RPGMYIG T  + LHHL  EV+DN++DE +AGY   IEV 
Sbjct: 2   TSNYGAEQIQVLEGLEPVRKRPGMYIGTTGPRGLHHLVYEVVDNSIDEALAGYCTHIEVD 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +G ++V D+GRGIP + HP    KS LE +LT LHAGGKF +  Y++SGGLHGVGIS
Sbjct: 62  IKADGSVSVTDDGRGIPTDVHP-TTGKSALETVLTILHAGGKFGSGGYKVSGGLHGVGIS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  + VTV R + + +Q++ RGIP++ L        K GTR+ F PD +IF    
Sbjct: 121 VVNALSAWVDVTVWRDHKVHTQRYERGIPVTELVSSPSQEEKTGTRVNFLPDTEIFSQGI 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD + L    +  AYL+  VK  +S  +        P  E + + GG+K Y+      +
Sbjct: 181 EFDYSTLSGRLRELAYLNAGVKITFSDYR-----PEEPHIETYCYEGGIKEYVAYMCREK 235

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
             +  +I     EK G     V +       +  I  + N I T +GGTH  GL+  LTR
Sbjct: 236 ETLHKDIIYVSGEKNGI-NIEVAFQWCIDAYSDNILGFANNIRTIDGGTHLEGLKAVLTR 294

Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +   A      +    ++  +++      ++SV + EPEF GQTKTKL + + +  V++
Sbjct: 295 TLNNVARKRNKIKENEPNLAGENVREGLTAVISVKVPEPEFEGQTKTKLGNTEVRGIVDS 354

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            + +  + YL QNP  A  ++E  ++  +     R+ R+ V RK+ +    LPGKLADCS
Sbjct: 355 LVGETLNEYLEQNPQVADTIIEKAVQAYKAAEAARRARDLVRRKSVLESSPLPGKLADCS 414

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           +     +E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILN+      KI  N +I  L+
Sbjct: 415 ERDPERSEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQSLI 474

Query: 518 QALGCRTRSQYREE-DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
            ALG   + +  +   LRY ++++MTDADVDGAHI +LLLTFFY+   +LI+Q ++++  
Sbjct: 475 TALGLGIKGEDFDPSQLRYHRIVLMTDADVDGAHIRTLLLTFFYRYQKNLIDQGYVYIAC 534

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+++ +G    Y + +   Q+ + EF  +      I RFKGLGEM+  QL +T M+  
Sbjct: 535 PPLYKLERGKNHSYCYSDRELQQKIAEFPSNAN--YTIQRFKGLGEMMPQQLWDTTMNPE 592

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS--FIDDVG 685
            RTL RVEI          ++    LMG +   R +FI+   S   + D+ 
Sbjct: 593 TRTLKRVEIED----AAKAEELFTILMGDRVAPRREFIETHGSRLNLTDLD 639


>gi|170077957|ref|YP_001734595.1| DNA gyrase subunit B [Synechococcus sp. PCC 7002]
 gi|169885626|gb|ACA99339.1| DNA gyrase, B subunit [Synechococcus sp. PCC 7002]
          Length = 640

 Score =  640 bits (1650), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/651 (39%), Positives = 370/651 (56%), Gaps = 19/651 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + NY A  I++LEGLEPVR RPGMYIG T  + LHHL  EV+DN++DE +AGY   I V 
Sbjct: 2   TSNYSAQQIQVLEGLEPVRKRPGMYIGTTGPRGLHHLVYEVVDNSVDEALAGYCTEINVE 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +G +TV DNGRGIPV+ HP    KS LE ++T LHAGGKF    Y++SGGLHGVG+S
Sbjct: 62  INADGSVTVTDNGRGIPVDVHP-STGKSALETVMTVLHAGGKFGAGGYKVSGGLHGVGVS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ + VTV R  T + Q++ RG+P   L +    ++  GT + F PD KIF +  
Sbjct: 121 VVNALSEWVEVTVWRDETTYKQRYERGVPQGELTEAPAPQHLSGTSVCFLPDAKIFTETT 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   L    +  AYL+  V+  ++  +   +         +++ GG+K Y+      +
Sbjct: 181 VFDYNTLAGRLRELAYLNAGVRIVFTDHRSEKQASNT-----YFYEGGIKEYVAYMNREK 235

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
           S +  EI     EK G  +  V         +  +  + N I T +GGTH  GL+  LTR
Sbjct: 236 SPLHEEIIYVTGEKNGV-QLEVALQWCTDAYSDNLLGFANNIRTVDGGTHLEGLKSVLTR 294

Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +   A      +    ++  +++      ++SV + +PEF GQTKTKL + + +  V++
Sbjct: 295 TMNTVARKRNKLKDNDSNLAGENIREGLTAVISVKVPDPEFEGQTKTKLGNSEVRGIVDS 354

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            + +    Y   N      +LE  I+  +     R+ RE V RK+ +    LPGKLADCS
Sbjct: 355 FVGEVLTEYFEFNLNVVDAILEKAIQAFKAAEAARRARELVRRKSVLESSLLPGKLADCS 414

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           +     TE+++VEGDSAGGSAKQ R+R+ QA+LPLRGKILN+      KI  N +I  L+
Sbjct: 415 ERDPAKTEIYLVEGDSAGGSAKQGRDRAFQAILPLRGKILNIEKTDDAKIYKNNEIQSLI 474

Query: 518 QALGCRTR-SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
            ALG   +  ++  E LRY +V+IMTDADVDGAHI +LLLTFFY+   +L++Q ++++  
Sbjct: 475 TALGLGIKGEEFNPEKLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRELVDQGYIYIAC 534

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+++ +G    Y + +   Q  + +   +   K  I RFKGLGEM+  QL +T M+  
Sbjct: 535 PPLYKLERGKNHAYCYSDRELQDQISQLPDN--AKYNIQRFKGLGEMMPQQLWDTTMNPE 592

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA--SFIDDVG 685
            RTL RVEI        +       LMG +   R +FI+  A    +DD+ 
Sbjct: 593 SRTLKRVEIED----AAEADRIFTVLMGDRVAPRREFIEMNAPKLNMDDLD 639


>gi|257470425|ref|ZP_05634516.1| DNA gyrase subunit B [Fusobacterium ulcerans ATCC 49185]
 gi|317064633|ref|ZP_07929118.1| DNA topoisomerase [Fusobacterium ulcerans ATCC 49185]
 gi|313690309|gb|EFS27144.1| DNA topoisomerase [Fusobacterium ulcerans ATCC 49185]
          Length = 635

 Score =  640 bits (1650), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/649 (40%), Positives = 380/649 (58%), Gaps = 20/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S+NY A +I +LEGLE VR RPGMYIG T E+ LHHL  E++DNA+DE +AGY + I V+
Sbjct: 2   SNNYQAENITVLEGLEAVRKRPGMYIGTTSERGLHHLVWEIVDNAVDEALAGYCDKIIVN 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  + V+DNGRGIPV  HPK+ NKS LEI+LT LHAGGKF+N  Y++SGGLHGVG+S
Sbjct: 62  ILPDNIIEVIDNGRGIPVGIHPKY-NKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGVS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+   VTV     I+ QK++RGIP   +++     +  GT + F+ D +IF    
Sbjct: 121 VVNALSEWTDVTVKTDGKIWYQKYNRGIPEEDVKEIGVTTDH-GTSVRFKADHEIFETLI 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +D   L    +  AYL+  ++   S  ++   K      EEF F GG+  +L+   E  
Sbjct: 180 -YDYNTLKNRLKELAYLNKGLEIHLSDSRKEPYKK-----EEFKFEGGIVDFLKEITEET 233

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALT 339
             +  E      E       TV+ A  +   +   I S+ N I T EGGTH SG R ALT
Sbjct: 234 EKLIPEPIYMSGEVDNV---TVDIAFLYTVNQAEVIYSFVNNINTHEGGTHVSGFRTALT 290

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I    +      ++   +  +D+      I+SV + +P+F GQTKTKL + +    V 
Sbjct: 291 RVINDVGKAQGYLKEKDGKLQGNDIREGVTAIVSVKVPQPQFEGQTKTKLGNSEVTGIVS 350

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADC 456
             +       L  NP +   ++E ++   + R   +K RE+  + + +    LPGKLADC
Sbjct: 351 TLVGTNLKIVLEDNPNDTKIIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADC 410

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S       E++IVEGDSAGGSAKQ R+RS+QA+LPLRGKILNV  AG  K   N ++  +
Sbjct: 411 SSKNPDECEIYIVEGDSAGGSAKQGRDRSHQAILPLRGKILNVEKAGLHKSLENNEVRAM 470

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A G      +  E LRY K+I+MTDADVDGAHI +LLLTF Y+ M DLI   ++++  
Sbjct: 471 ITAFGTSIGDSFNIEKLRYGKIILMTDADVDGAHIRTLLLTFIYRFMVDLIYNGNVYIAQ 530

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL++IT G +  YA+ ++  ++I + F+   + K  + R+KGLGEM   QL +T M+ +
Sbjct: 531 PPLYKITTGKQIRYAYTDKELKEITDVFEGDDR-KYTLQRYKGLGEMNPEQLWDTTMNPD 589

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            RTLL+V I+      +      +KLMG K D R +FI+E A ++ ++ 
Sbjct: 590 TRTLLQVTIDD----ARAADMLFDKLMGDKVDPRREFIEENAVYVKNLD 634


>gi|159028965|emb|CAO87426.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 640

 Score =  639 bits (1649), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/651 (39%), Positives = 373/651 (57%), Gaps = 19/651 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + NY A  I++LEGLEPVR RPGMYIG T  + LHHL  EV+DN++DE +AGY   IEV 
Sbjct: 2   TSNYGAEQIQVLEGLEPVRKRPGMYIGTTGPRGLHHLVYEVVDNSIDEALAGYCTHIEVD 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +G ++V D+GRGIP + HP    KS LE +LT LHAGGKF +  Y++SGGLHGVGIS
Sbjct: 62  IKADGSVSVTDDGRGIPTDVHP-TTGKSALETVLTILHAGGKFGSGGYKVSGGLHGVGIS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  + VTV R + + +Q++ RGIP++ L        K GTR+ F PD +IF    
Sbjct: 121 VVNALSAWVDVTVWRDHKVHTQRYERGIPVTELVSSPSQEEKTGTRVNFLPDTEIFSQGI 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD + L    +  AYL+  VK  +S  +        P  E + + GG+K Y+      +
Sbjct: 181 EFDYSTLSGRLRELAYLNAGVKITFSDYR-----AEEPHIETYCYEGGIKEYVAYMCREK 235

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
             +  +I     EK G     V +       +  I  + N I T +GGTH  GL+  LTR
Sbjct: 236 ETLHKDIIYVSGEKNGI-NIEVAFQWCIDAYSDNILGFANNIRTIDGGTHLEGLKAVLTR 294

Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +   A      +    ++  +++      ++SV + EPEF GQTKTKL + + +  V++
Sbjct: 295 TLNNVARKRNKIKENEPNLAGENVREGLTAVISVKVPEPEFEGQTKTKLGNTEVRGIVDS 354

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            + +  + YL QNP  A  ++E  ++  +     R+ R+ V RK+ +    LPGKLADCS
Sbjct: 355 LVGETLNEYLEQNPQVADTIIEKAVQAYKAAEAARRARDLVRRKSVLESSPLPGKLADCS 414

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           +     +E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILN+      KI  N +I  L+
Sbjct: 415 ERDPEKSEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQSLI 474

Query: 518 QALGCRTRSQYREE-DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
            ALG   + +  +   LRY ++++MTDADVDGAHI +LLLTFFY+   +LI+Q ++++  
Sbjct: 475 TALGLGIKGEDFDPSQLRYHRIVLMTDADVDGAHIRTLLLTFFYRYQKNLIDQGYVYIAC 534

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+++ +G    Y + +   Q+ + EF  +      I RFKGLGEM+  QL +T M+  
Sbjct: 535 PPLYKLERGKNHSYCYSDRELQQKIAEFPSNAN--YTIQRFKGLGEMMPQQLWDTTMNPE 592

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA--SFIDDVG 685
            RTL RVEI          ++    LMG +   R +FI+       + D+ 
Sbjct: 593 TRTLKRVEIED----AAKAEELFTILMGDRVAPRREFIETHGPRLNLTDLD 639


>gi|184154481|ref|YP_001842821.1| DNA gyrase subunit B [Lactobacillus fermentum IFO 3956]
 gi|227514123|ref|ZP_03944172.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC
           14931]
 gi|260662542|ref|ZP_05863437.1| DNA gyrase, B subunit [Lactobacillus fermentum 28-3-CHN]
 gi|183225825|dbj|BAG26341.1| DNA gyrase subunit B [Lactobacillus fermentum IFO 3956]
 gi|227087494|gb|EEI22806.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC
           14931]
 gi|260553233|gb|EEX26176.1| DNA gyrase, B subunit [Lactobacillus fermentum 28-3-CHN]
 gi|299782689|gb|ADJ40687.1| DNA gyrase subunit B [Lactobacillus fermentum CECT 5716]
          Length = 649

 Score =  639 bits (1649), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/656 (38%), Positives = 381/656 (58%), Gaps = 20/656 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
                 +  YDAS I++L+GLE VR RPGMYIG T  + LHHL  E++DN +DE +AG+ 
Sbjct: 8   ARKAELASEYDASQIQVLKGLEAVRKRPGMYIGSTTVQGLHHLVWEIVDNGIDEALAGFC 67

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I V ++ +  + V DNGRGIPV+   K   K  LE + T LHAGGKF N  Y++SGGL
Sbjct: 68  DEINVIVEPDNSIIVTDNGRGIPVDIQ-KETGKPALETVFTVLHAGGKFGNGGYKVSGGL 126

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPD 212
           HGVG SVVNALS EL V VARQ   +   F+RG   + ++  +    ++  GT + F PD
Sbjct: 127 HGVGASVVNALSTELDVKVARQGKEYYMDFARGHVNTAMKVIKDDLPQSAHGTTVHFVPD 186

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P+IF +   ++   L+   +  A+L+  +K      +E  EK     +E F++ GG++ Y
Sbjct: 187 PEIFRETTVYNINTLIDRLRELAFLNKGLKITVEDRREGKEK-----QESFHYEGGIRHY 241

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++   E   L+       + E KG    TVE ++ + ++    + ++ N I T EGGTHE
Sbjct: 242 VEFLNEGHELLFDPPIYVEGEYKGI---TVEVSLQYTDDYRSNLLTFTNNIHTYEGGTHE 298

Query: 332 SGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           +G + ALTR I  Y   +   K  +++  +D+      ++S+    P+F GQTKTKL + 
Sbjct: 299 TGFKTALTRVINDYGRKSGQIKGNVTLSGEDVREGLTAVVSIKHPNPQFEGQTKTKLSNS 358

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           DA+   ++   +    ++++NP  A K++E  +  S+ R   ++ RE   +K+ +    L
Sbjct: 359 DARTATDHIFAETMTRFMMENPDVARKIVEKGMLASKARDAAKRAREVTRKKSGLEISNL 418

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLAD +      +ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A   ++  
Sbjct: 419 PGKLADNTSKDPAISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASLNRVLA 478

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N++I  L  ALG      +      Y K+IIMTDADVDGAHI +LLLT FY+ M  +IE+
Sbjct: 479 NEEIRSLFTALGTGFGDDFDVNKANYHKLIIMTDADVDGAHIRTLLLTLFYRFMRPMIEK 538

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
            ++++  PPL+++ QG    Y  ++E  ++++   +     K  I R+KGLGEM A QL 
Sbjct: 539 GYVYIAQPPLYQVRQGKFVKYIENDEELERVVNSLQPS--PKPVIQRYKGLGEMDAEQLW 596

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           ET MD   R LLRV+++      K   +    LMGTK   R +FI+E A+F++++ 
Sbjct: 597 ETTMDPANRHLLRVKLDD----AKAADEIFQMLMGTKVGPRREFIEENATFVENLD 648


>gi|188584649|ref|YP_001916194.1| DNA gyrase subunit B [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349336|gb|ACB83606.1| DNA gyrase subunit B [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 640

 Score =  639 bits (1649), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/649 (41%), Positives = 390/649 (60%), Gaps = 22/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
             NYD S I++LEGLE VR RPGMYIG TDE+ LHHL  EV+DN++DE +AGY + I + 
Sbjct: 9   EQNYDESQIQVLEGLEAVRKRPGMYIGSTDERGLHHLVHEVVDNSIDEAMAGYCDDIRIK 68

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L+    + V DNGRGIPV++HPK   K TLE+I+T LHAGGKF N +Y++SGGLHGVGIS
Sbjct: 69  LEPGNKVRVTDNGRGIPVKDHPKI-KKPTLEVIMTYLHAGGKFSNDSYKVSGGLHGVGIS 127

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVN LS  + V V R   ++ Q++ +G P + +++  +  +KRGT I F PD +IF    
Sbjct: 128 VVNGLSKWIRVKVYRDGKVYQQEYEKGYPKTEIKEIGE-SDKRGTEIIFLPDEEIFETV- 185

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   L    Q  A+L+  V    S ++E        ++E F + GG+K++++   EN+
Sbjct: 186 EFDYQVLRNRLQQLAFLNRGVSITISDERED-----EFKEEHFKYEGGIKSFVEYLNENK 240

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALT 339
           + + +     + E++G     +E AI + +   E+   Y N I T EGGTHESG +++LT
Sbjct: 241 TTLFTPPVYIEGEQEG---CKLEVAIQYNDGYQEMIHSYANNINTHEGGTHESGFKISLT 297

Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  YA      +    ++  +D+      I+SV + +P+F GQTKTKL + + +R VE
Sbjct: 298 RTVNDYARRHNLLKNGDKNLTGEDIREGITAIISVKVEDPQFEGQTKTKLGNSEVRRIVE 357

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
             + +  + YL +NP    K++   I  S  R   RK +E   RK A+    LPGKLADC
Sbjct: 358 GIVSEHLESYLEENPAVGKKIVNKAINASRAREAARKAKELTRRKNALEVTALPGKLADC 417

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +   A  +EL++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI  N++I  +
Sbjct: 418 TTKDASKSELYLVEGDSAGGSAKQGRDREFQAILPLRGKILNVEKARFDKILANEEIKTI 477

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G     ++     RY+++IIMTDADVDGAHI +LLLTFFY+ M  LIE  ++++  
Sbjct: 478 ITAIGTGIGEEFDISKARYQRIIIMTDADVDGAHIRTLLLTFFYRYMRPLIEHGYVYIAQ 537

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+ + +  K  Y  ++     +LEE  K G   I + R+KGLGEM  +QL ET M+  
Sbjct: 538 PPLYMVKKKGKHYYTFNDHELDNLLEEIGKEG---ISLQRYKGLGEMNPTQLWETTMNPE 594

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            RT+L V +   +    +       LMG K   R KFI+E A  + ++ 
Sbjct: 595 SRTVLNVNLQDAI----EADKIFTVLMGEKVSPRRKFIEENARDVRNLD 639


>gi|257789784|ref|YP_003180390.1| DNA gyrase, B subunit [Eggerthella lenta DSM 2243]
 gi|317489247|ref|ZP_07947764.1| DNA gyrase, subunit B [Eggerthella sp. 1_3_56FAA]
 gi|325832276|ref|ZP_08165275.1| DNA gyrase, B subunit [Eggerthella sp. HGA1]
 gi|257473681|gb|ACV54001.1| DNA gyrase, B subunit [Eggerthella lenta DSM 2243]
 gi|316911648|gb|EFV33240.1| DNA gyrase, subunit B [Eggerthella sp. 1_3_56FAA]
 gi|325486112|gb|EGC88566.1| DNA gyrase, B subunit [Eggerthella sp. HGA1]
          Length = 648

 Score =  639 bits (1648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/655 (38%), Positives = 376/655 (57%), Gaps = 18/655 (2%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  D+YD S I++LEGLE VR RPGMYIG T  + LHHL  EV+DNA+DE +AGY + I+
Sbjct: 3   NKPDHYDGSDIQVLEGLEAVRKRPGMYIGSTGPRGLHHLVYEVVDNAVDEALAGYCDEIK 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V +  +  ++V DNGRGIP++ HPK     T+E++LT LHAGGKF    Y++SGGLHGVG
Sbjct: 63  VWIHQDNSISVDDNGRGIPIDKHPK-EKIPTVEVVLTILHAGGKFGGEGYKVSGGLHGVG 121

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS  + V V ++   +   F  G     L +    +   GT ++F PDP+IF +
Sbjct: 122 VSVVNALSSRVEVQVRKEGKEYFIGFDHGKTSEKLREVGPTKRGNGTTVSFWPDPEIFTE 181

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              +D   L    +  A+L+  +K     ++ + +  G P  E F + GG+  +++   E
Sbjct: 182 TTVYDFDTLANRFREMAFLNKGLKIVLYDER-VTDADGKPRTEVFQYAGGIVDFVKFLNE 240

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
            +  ++  I+       GT    ++W+ ++      + ++ N I T EGGTH  G + A+
Sbjct: 241 GKETLNKPIYFEAENDDGTVEVAMQWSTSYSTN--SVMAFANNINTHEGGTHLDGFKQAV 298

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR I +YA       ++  ++  DD       I+SV + +P+F GQTKTKL + + +  V
Sbjct: 299 TRTINEYARSKGILKEKDSNLSGDDTREGCAAIVSVKLHDPQFEGQTKTKLGNTEIRPLV 358

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLAD 455
           +NA+      YL +NP  A +++    +  + R   RK RE+ R+   +    LPGKLAD
Sbjct: 359 QNAVTQGLAEYLEENPTPAKRIIGKATQALKAREAARKAREMTRRKGVLDSFALPGKLAD 418

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS      +ELFIVEGDSAGGSAKQAR+R  QA+LPLRGKILNV  AG  +  ++  I  
Sbjct: 419 CSSKTPENSELFIVEGDSAGGSAKQARDRKTQAILPLRGKILNVERAGLHRSLSSDTISS 478

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           L+ A+G      +  +  RY ++IIMTDADVDGAHI  LLLTFFY+ M +LI + ++++ 
Sbjct: 479 LITAIGTNIGDDFDADQSRYHRIIIMTDADVDGAHIRILLLTFFYRYMPELINRGYIYIA 538

Query: 576 SPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
            PP+F + +          Y +DE     +L E+      K ++ R+KGLGEM   QL E
Sbjct: 539 QPPIFGLKKKNSRSPKIERYIYDESSLGSVLAEY--DDPNKFDVQRYKGLGEMDPDQLWE 596

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T M+   RTLL+V I+       + +  ++ LMG + + R +FIQ+ A  +  + 
Sbjct: 597 TTMEPATRTLLQVSIDD----AAEAERVVSDLMGDQVEPRKEFIQKHARDVRFLD 647


>gi|306841761|ref|ZP_07474447.1| DNA topoisomerase IV, B subunit [Brucella sp. BO2]
 gi|306288166|gb|EFM59553.1| DNA topoisomerase IV, B subunit [Brucella sp. BO2]
          Length = 680

 Score =  639 bits (1648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/645 (64%), Positives = 518/645 (80%), Gaps = 5/645 (0%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           D+Y+ASSIR+LEGLEPVR+RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+AN IEV++
Sbjct: 39  DDYNASSIRVLEGLEPVRLRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHANFIEVTV 98

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           D  GF+TV DNGRGIPV+ HP+ P KSTLE+I+T LHAGGKFD   YE SGGLHGVG+SV
Sbjct: 99  DKEGFVTVSDNGRGIPVDEHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVSV 158

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALSD L V VAR   ++ Q FSRGIP   LE+  +V N+RGTR+ F PDP+IFG  A 
Sbjct: 159 VNALSDVLEVEVARNRRLYRQCFSRGIPQGGLEELGEVHNRRGTRVRFHPDPEIFGKNAH 218

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENR 280
           FD  RL +M +SKAYL G V+  W+CD  + + K   PEK  F+FPGGLK YL+  L   
Sbjct: 219 FDPHRLYRMARSKAYLFGGVEIRWNCDPSLLDPKKETPEKAVFHFPGGLKDYLEASLGKE 278

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
             ++ E+F G+TEK+G H G VEWA+AW   +  + SYCNTI T +GGTHE+GLR+ALTR
Sbjct: 279 HQVTREVFAGRTEKQGGH-GAVEWAVAWFGGDGFVHSYCNTIPTGDGGTHEAGLRIALTR 337

Query: 341 GIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
           G+K YAELT NKRA  I +DD+M+SA G+LSVFIREPEF GQTK KL +++AQR VENA+
Sbjct: 338 GLKAYAELTNNKRASIITTDDVMVSAAGMLSVFIREPEFVGQTKDKLATVEAQRIVENAI 397

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
           RDPFDH+L  +P EA++LLEWVI+R++ERLRRR+++E  RK+A RKLRLPGKLADC+QN 
Sbjct: 398 RDPFDHWLAASPQEASRLLEWVIDRADERLRRRQEKETVRKSATRKLRLPGKLADCTQNA 457

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
           A G ELFIVEGDSAGGSAKQARNR+NQA+LPLRGKILNVASAG EK+  NQQI DLVQAL
Sbjct: 458 AAGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLTANQQIADLVQAL 517

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           GC TR  YRE+DLRY++VI+MTDADVDGAHIASLL+TFFYQEM +LI   HL+L  PPL+
Sbjct: 518 GCGTRKNYREDDLRYDRVIVMTDADVDGAHIASLLITFFYQEMPELIRNGHLYLAVPPLY 577

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           R++QG K+ YA D+ HK+++L      G+GKIEI RFKGLGEM A QLKET MD  KRTL
Sbjct: 578 RLSQGGKTAYARDDAHKEELLRTVF-TGRGKIEIGRFKGLGEMRADQLKETTMDPAKRTL 636

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           LRV+++++     +T+++++ LMGTK + RF+FIQ+RA+F++++ 
Sbjct: 637 LRVQVDEEYGD--ETRNTVDDLMGTKPEARFRFIQDRAAFVEELD 679


>gi|189462935|ref|ZP_03011720.1| hypothetical protein BACCOP_03637 [Bacteroides coprocola DSM 17136]
 gi|189430362|gb|EDU99346.1| hypothetical protein BACCOP_03637 [Bacteroides coprocola DSM 17136]
          Length = 654

 Score =  639 bits (1648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/660 (40%), Positives = 391/660 (59%), Gaps = 23/660 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            S+ +NY ASSI++LEGLE VR RP MYIG   EK LHHL  EV+DN++DE +AGY   I
Sbjct: 7   PSSGNNYSASSIQVLEGLEAVRKRPAMYIGDISEKGLHHLVYEVVDNSIDEALAGYCTHI 66

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           EV+++ +  +TV DNGRGIPV+ H K   KS LE+++T LHAGGKFD  +Y++SGGLHGV
Sbjct: 67  EVTINEDNSITVQDNGRGIPVDFHEK-EKKSALEVVMTVLHAGGKFDKGSYKVSGGLHGV 125

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+S VNALS  +   V R   I  Q+++ G PL  +++     +  GTR TF PD  IF 
Sbjct: 126 GVSCVNALSTHMTTNVFRNGKIHQQEYACGKPLYAVKEVG-TTDITGTRQTFWPDGSIFT 184

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               +    L    +  AYL+  +    +  +E  E+ G  ++E F+   G+K +++   
Sbjct: 185 TT-EYKYNILQARMRELAYLNKGITITLTDKRE-KEEDGSFKQEIFHSEEGVKEFVRFLN 242

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
              + +  ++    TEK+G     +E AI +       + SY N I T EGGTHE+G R 
Sbjct: 243 STNTPLIDDVIYLNTEKQGIP---IECAIMYNTGFRENLHSYVNNINTIEGGTHEAGFRT 299

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +KKYAE ++   K  + I  +D     + ++SV + EP+F GQTKTKL + +   
Sbjct: 300 ALTRVLKKYAEESKALEKAKVEISGEDFREGLIAVISVKVAEPQFEGQTKTKLGNNEVSG 359

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKL 453
            V  A+ +   +YL ++P EA  +++ V+  +  R+  RK RE  ++ + +    LPGKL
Sbjct: 360 AVNQAVGEALTYYLEEHPKEAKTIVDKVVLAATARIAARKARESVQRKSPMGGGGLPGKL 419

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS   A   ELF+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A   K   + ++
Sbjct: 420 ADCSSRTAEECELFLVEGDSAGGSAKQGRSRQFQAILPLRGKILNVEKAMWHKAFESDEV 479

Query: 514 MDLVQALGCRT-------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
            +++QALG R          +   + LRY KVIIMTDADVDG+HI +L++T FY+ M ++
Sbjct: 480 NNIIQALGVRFGVDGTEDSKKANIDKLRYHKVIIMTDADVDGSHIDTLIMTLFYRYMPEV 539

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           I+  HL++ +PPL++ ++G  S Y + +E +Q  ++++    +  I   R+KGLGEM   
Sbjct: 540 IQGGHLYIANPPLYKCSKGKISEYCYTDEERQAFMQKYGDGTETGIHTQRYKGLGEMNPE 599

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           QL ET M+   R L +V I     +  +     + LMG     R +FI++ A++  ++  
Sbjct: 600 QLWETTMNPETRILKQVSIE----NAAEADYIFSMLMGDDVAPRREFIEKHATYA-NIDA 654


>gi|319651104|ref|ZP_08005238.1| DNA topoisomerase IV subunit B [Bacillus sp. 2_A_57_CT2]
 gi|317397274|gb|EFV77978.1| DNA topoisomerase IV subunit B [Bacillus sp. 2_A_57_CT2]
          Length = 642

 Score =  639 bits (1648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/649 (40%), Positives = 380/649 (58%), Gaps = 21/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
             +YD + I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I V 
Sbjct: 10  EQSYDENQIQVLEGLEAVRKRPGMYIGSTSAKGLHHLVWEIVDNSIDEALAGYCSEINVI 69

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TVVDNGRGIPV  H K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 70  IEKDNSITVVDNGRGIPVGIHEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 128

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  L V V R    + QKF RG+P + LE   +  +  GT I F+PD +IF +  
Sbjct: 129 VVNALSTVLEVFVHRDGQKYYQKFERGVPSADLEVIGET-DHTGTTIHFKPDSEIFTETL 187

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +D   L    +  A+L+  +K      +E  +K       E+ + GG+K+Y++     +
Sbjct: 188 EYDYETLANRIRELAFLNRGLKITIEDKREENKK------SEYMYEGGIKSYVEHLNRTK 241

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
            ++  E      E++G    TVE +I + +     I S+ N I T EGGTHESG + ALT
Sbjct: 242 EVLHEEPIYIDGEREGI---TVEVSIQYNDGFTSNIYSFANNIHTYEGGTHESGFKTALT 298

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA       +   ++  +D+      I+SV   +P+F GQTKTKL + + +   +
Sbjct: 299 RVINDYARKNGVFKESDANLSGEDVREGLTAIVSVKHPDPQFEGQTKTKLGNSEVRAATD 358

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
               +  + ++++NP  A K++E  ++        ++ +    RK+A+    LPGKLADC
Sbjct: 359 TIFSEALEKFMLENPTVARKIVEKGLMAARARLAAKKARELTRRKSALEVSSLPGKLADC 418

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +EL++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  +
Sbjct: 419 SSKDPSISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRAI 478

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +     RY K++IMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 479 ITAIGTGIGEDFDISRARYHKIVIMTDADVDGAHIRTLLLTFFYRYMRQIIEAGYIYIAQ 538

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL++I QG K  YA+++    KIL E     K    I R+KGLGEM   QL ET M+  
Sbjct: 539 PPLYKIQQGKKIEYAYNDRELDKILGELPSQPKPG--IQRYKGLGEMNPGQLWETTMNPE 596

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            RTLL+V +   +    +  ++   LMG K + R  FI+E A ++ ++ 
Sbjct: 597 SRTLLQVNLEDAI----EADETFEILMGDKVEPRRNFIEENAVYVKNLD 641


>gi|306845925|ref|ZP_07478492.1| DNA topoisomerase IV, B subunit [Brucella sp. BO1]
 gi|306273560|gb|EFM55405.1| DNA topoisomerase IV, B subunit [Brucella sp. BO1]
          Length = 680

 Score =  639 bits (1648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/645 (64%), Positives = 518/645 (80%), Gaps = 5/645 (0%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           D+Y+ASSIR+LEGLEPVR+RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+AN IEV++
Sbjct: 39  DDYNASSIRVLEGLEPVRLRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHANFIEVTV 98

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           D  GF+TV DNGRGIPV+ HP+ P KSTLE+I+T LHAGGKFD   YE SGGLHGVG+SV
Sbjct: 99  DKEGFVTVSDNGRGIPVDEHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVSV 158

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALSD L V VAR   ++ Q FSRGIP   LE+  +V N+RGTR+ F PDP+IFG  A 
Sbjct: 159 VNALSDVLEVEVARNRRLYRQCFSRGIPQGGLEELGEVHNRRGTRVRFHPDPEIFGKNAH 218

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENR 280
           FD  RL +M +SKAYL G V+  W+CD  + + K   PEK  F+FPGGLK YL+  L   
Sbjct: 219 FDPHRLYRMARSKAYLFGGVEIRWNCDPSLLDPKKETPEKAVFHFPGGLKDYLEASLGKE 278

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
             ++ E+F G+TEK+G H G VEWA+AW   +  + SYCNTI T +GGTHE+GLR+ALTR
Sbjct: 279 HQVTREVFAGRTEKQGGH-GAVEWAVAWFGGDGFVHSYCNTIPTGDGGTHEAGLRIALTR 337

Query: 341 GIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
           G+K YAELT NKRA  I +DD+M+SA G+LSVFIREPEF GQTK KL +++AQR VENA+
Sbjct: 338 GLKAYAELTNNKRASIITTDDVMVSAAGMLSVFIREPEFVGQTKDKLATVEAQRIVENAI 397

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
           RDPFDH+L  +P EA++LLEWVI+R++ERLRRR+++E  RK+A RKLRLPGKLADC+QN 
Sbjct: 398 RDPFDHWLAASPQEASRLLEWVIDRADERLRRRQEKETVRKSATRKLRLPGKLADCTQNA 457

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
           A G ELFIVEGDSAGGSAKQARNR+NQA+LPLRGKILNVASAG EK+  NQQI DLVQAL
Sbjct: 458 AAGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLTANQQIADLVQAL 517

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           GC TR  YRE++LRY++VI+MTDADVDGAHIASLL+TFFYQEM +LI   HL+L  PPL+
Sbjct: 518 GCGTRKNYREDNLRYDRVIVMTDADVDGAHIASLLITFFYQEMPELIRNGHLYLAVPPLY 577

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           R++QG K+ YA D+ HK+++L      G+GKIEI RFKGLGEM A QLKET MD  KRTL
Sbjct: 578 RLSQGGKTAYARDDAHKEELLRTVF-TGRGKIEIGRFKGLGEMRADQLKETTMDPAKRTL 636

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           LRV+++++     +T+++++ LMGTK + RF+FIQ+RA+F++++ 
Sbjct: 637 LRVQVDEEYGD--ETRNTVDDLMGTKPEARFRFIQDRAAFVEELD 679


>gi|298372284|ref|ZP_06982274.1| DNA gyrase, B subunit [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275188|gb|EFI16739.1| DNA gyrase, B subunit [Bacteroidetes oral taxon 274 str. F0058]
          Length = 653

 Score =  639 bits (1648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/664 (40%), Positives = 399/664 (60%), Gaps = 21/664 (3%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           S    N++ +  Y ASSI++LEGLE VR RP MYIG   EK LHHL  EV+DN++DE +A
Sbjct: 2   SDETTNKALNKEYGASSIQVLEGLEAVRKRPAMYIGDVGEKGLHHLVYEVVDNSIDEALA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           GY   I V+++ +  +TV D+GRGIPV+ H K   KS LE+++T LHAGGKFD  +Y++S
Sbjct: 62  GYCKNISVTINKDNSVTVKDDGRGIPVDIHEK-EKKSALEVVMTVLHAGGKFDKGSYKVS 120

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+S VNALSD L   V R    + Q++SRG+PL  +++     ++ GT ITF P
Sbjct: 121 GGLHGVGVSCVNALSDYLKAEVCRNGKRYVQEYSRGVPLGEVKEVG-TSSETGTTITFHP 179

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           D  IF D   +  + L+K  +  A+L+  ++   +  +   E+ G  + EEFY   GL+ 
Sbjct: 180 DKDIFIDIH-YKYSILVKRMRELAFLNAGIRLTITDLRS-EEEGGANKTEEFYSEQGLRE 237

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTH 330
           +++     R  + +++    T+K GT    VE A+ +     E    Y N I T EGGTH
Sbjct: 238 FVKYIDSTREPLINDVIYIDTDKYGTP---VEVAMMYNTSYTENLHSYVNNINTIEGGTH 294

Query: 331 ESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +KKYA+  +   K  + I SDD       ++SV + EP+F GQTKTKL 
Sbjct: 295 VTGFRTALTRTLKKYADDNKLLEKTKVEISSDDFREGITAVISVKVAEPQFEGQTKTKLG 354

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKL 447
           + + +  V+ A+ +  + +L ++P EA  ++E +I  +  R   RK RE+ ++ + +   
Sbjct: 355 NDEVKGMVDRAVGEALNVFLEEHPKEAKTIVEKIILAATARNAARKARELVQRKSPLSGG 414

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADCS   A   E+F+VEGDSAGGSAKQ R+R+ QA+LPLRGKILNV  A   K 
Sbjct: 415 GLPGKLADCSSRDASLCEIFLVEGDSAGGSAKQGRDRNFQAILPLRGKILNVEKAMRHKA 474

Query: 508 RNNQQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
             ++++ ++  ALG    ++        E LRY KV+IMTDADVDG+HIA+L+LTFF++ 
Sbjct: 475 FESEEVRNIYTALGVTIGTEEDSQALNIEKLRYHKVVIMTDADVDGSHIATLILTFFFRY 534

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
           M +LIEQ H+++ +PPL+   +G    Y   EE + + ++++    +  I   R+KGLGE
Sbjct: 535 MKELIEQGHVYIATPPLYLCKKGKVQEYCWTEEQRLRFIQQYGDGKESGITQQRYKGLGE 594

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           M   QL ET M+   RTL ++ I     +  +     + LMG     R +FI+E A++  
Sbjct: 595 MNPEQLWETTMNPENRTLRQITIE----NAAEADYVFSMLMGDDVAPRRQFIEENATYA- 649

Query: 683 DVGT 686
           ++  
Sbjct: 650 NIDA 653


>gi|148558666|ref|YP_001257579.1| DNA topoisomerase IV subunit B [Brucella ovis ATCC 25840]
 gi|189022806|ref|YP_001932547.1| DNA topoisomerase IV subunit B [Brucella abortus S19]
 gi|148369951|gb|ABQ62823.1| DNA topoisomerase IV, B subunit [Brucella ovis ATCC 25840]
 gi|189021380|gb|ACD74101.1| DNA topoisomerase IV subunit B [Brucella abortus S19]
 gi|326410748|gb|ADZ67812.1| DNA topoisomerase IV subunit B [Brucella melitensis M28]
 gi|326554041|gb|ADZ88680.1| DNA topoisomerase IV subunit B [Brucella melitensis M5-90]
          Length = 680

 Score =  639 bits (1647), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/645 (64%), Positives = 518/645 (80%), Gaps = 5/645 (0%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           D+Y+ASSIR+LEGLEPVR+RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+AN IEV++
Sbjct: 39  DDYNASSIRVLEGLEPVRLRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHANFIEVTV 98

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           D  GF+TV DNGRGIPV+ HP+ P KSTLE+I+T LHAGGKFD   YE SGGLHGVG+SV
Sbjct: 99  DKEGFVTVSDNGRGIPVDEHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVSV 158

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALSD L V VAR   ++ Q FSRGIP   LE+  +V N+RGTR+ F PDP+IFG  A 
Sbjct: 159 VNALSDVLEVEVARNRRLYRQCFSRGIPQGGLEELGEVHNRRGTRVRFHPDPEIFGKNAH 218

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENR 280
           FD  RL +M +SKAYL G V+  W+CD  + + K   PEK  F+FPGGLK YL+  L   
Sbjct: 219 FDPHRLYRMARSKAYLFGGVEIRWNCDPSLLDPKKETPEKAVFHFPGGLKDYLEASLGKE 278

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
             ++ E+F G+TEK+G H G VEWA+AW   +  + SYCNTI T +GGTHE+GLR+ALTR
Sbjct: 279 HQVTREVFAGRTEKQGGH-GAVEWAVAWFGGDGFVHSYCNTIPTGDGGTHEAGLRIALTR 337

Query: 341 GIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
           G+K YAELT NKRA  I +DD+M+SA G+LSVFIREPEF GQTK KL +++AQR VENA+
Sbjct: 338 GLKAYAELTNNKRASIITTDDVMVSAAGMLSVFIREPEFVGQTKDKLATVEAQRLVENAI 397

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
           RDPFDH+L  +P EA++LLEWVI+R++ERLRRR+++E  RK+A RKLRLPGKLADC+QN 
Sbjct: 398 RDPFDHWLAASPQEASRLLEWVIDRADERLRRRQEKETVRKSATRKLRLPGKLADCTQNA 457

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
           A G ELFIVEGDSAGGSAKQARNR+NQA+LPLRGKILNVASAG EK+  NQQI DLVQAL
Sbjct: 458 AAGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLTANQQIADLVQAL 517

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           GC TR  YRE+DLRY++VI+MTDADVDGAHIASLL+TFFYQEM +LI   HL+L  PPL+
Sbjct: 518 GCGTRKNYREDDLRYDRVIVMTDADVDGAHIASLLITFFYQEMPELIRNGHLYLAVPPLY 577

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           R++QG K+ YA D+ HK+++L      G+GKIEI RFKGLGEM A QLKET MD  KRTL
Sbjct: 578 RLSQGGKTAYARDDAHKEELLRTVF-TGRGKIEIGRFKGLGEMRADQLKETTMDPAKRTL 636

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           LRV+++++     +T+++++ LMGTK + RF+FIQ+RA+F++++ 
Sbjct: 637 LRVQVDEEYGD--ETRNTVDDLMGTKPEARFRFIQDRAAFVEELD 679


>gi|148241191|ref|YP_001226348.1| DNA gyrase subunit B [Synechococcus sp. RCC307]
 gi|147849501|emb|CAK26995.1| DNA gyrase subunit B [Synechococcus sp. RCC307]
          Length = 657

 Score =  639 bits (1647), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/663 (39%), Positives = 385/663 (58%), Gaps = 15/663 (2%)

Query: 30  PDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEV 89
            ++   ++      Y A  I++LEGLEPVR RPGMYIG T  + LHHL  EV+DN++DE 
Sbjct: 2   SEATRPSSSQVQAAYGAEQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEA 61

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
           +AG+ N I+V L  +G  +V DNGRGIP + HP+   KS LE +LT LHAGGKF +  Y+
Sbjct: 62  LAGHCNTIDVCLRADGSCSVADNGRGIPTDVHPR-TGKSALETVLTVLHAGGKFGSGGYK 120

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS+ + VTV RQ+ +  Q+F RG P+  L  +   + + GT + F
Sbjct: 121 VSGGLHGVGVSVVNALSEWVEVTVHRQDKVHRQRFERGAPIGSLASEAGEKGRTGTSVCF 180

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGG 268
           +PD +IF     FD A L    +  AYL+G VK  +  ++ E A + G P +E +++ GG
Sbjct: 181 KPDIEIFTGGISFDYATLSGRLRELAYLNGGVKIVFRDERPEAAGEDGQPHEEIYFYEGG 240

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGG 328
           ++ Y+      +  +  +I    +EK G  +            +  I  + N I T +GG
Sbjct: 241 IREYVNYMNAEKDPLHPDIIYVNSEKDGV-QVEAALQWCVDAYSDSILGFANNIRTVDGG 299

Query: 329 THESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH  GL+  LTR +  +A     ++    ++  +++      +LSV + +PEF GQTKTK
Sbjct: 300 THIEGLKTVLTRTLNTFARKRGKRKDSDGNLAGENIREGLTAVLSVKVPDPEFEGQTKTK 359

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           L + + +  V+  + +    YL  +P     +LE  I+        R+ RE V RK+ + 
Sbjct: 360 LGNTEVRGIVDTVVGEALSEYLEFHPQVIDLILEKAIQAFNAAEAARRARELVRRKSVLE 419

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS      +E++IVEGDSAGGSAKQ R+R NQA+LPLRGKILN+      
Sbjct: 420 SSTLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNIEKTDDA 479

Query: 506 KIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           KI  N +I  L+ ALG   + +  +  +LRY +++IMTDADVDGAHI +L+LTFFY+   
Sbjct: 480 KIYKNTEIQALITALGLGIKGEEFDVSNLRYHRIVIMTDADVDGAHIRTLILTFFYRYQR 539

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
           +L+E  ++++  PPL+++ +G    Y ++E+  +K L+ F +  K    I RFKGLGEM+
Sbjct: 540 ELVEGGYIYIACPPLYKVERGKNHTYCYNEQDLKKTLDGFGE--KANYTIQRFKGLGEMM 597

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID-- 682
             QL ET MD   RT+ RVEI                LMG K   R +FI+  ++ ++  
Sbjct: 598 PQQLWETTMDPTTRTMKRVEIED----AAQADRIFTILMGDKVAPRREFIETHSAELNLA 653

Query: 683 DVG 685
           D+ 
Sbjct: 654 DLD 656


>gi|169830224|ref|YP_001716206.1| DNA gyrase, B subunit [Candidatus Desulforudis audaxviator MP104C]
 gi|169637068|gb|ACA58574.1| DNA gyrase, B subunit [Candidatus Desulforudis audaxviator MP104C]
          Length = 635

 Score =  638 bits (1646), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/645 (38%), Positives = 382/645 (59%), Gaps = 21/645 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y A  I++LEGLE VR RPGMYIG T  K LHHL  EV+DN++DE +AG+ + IEV +  
Sbjct: 8   YRAEDIQVLEGLEAVRKRPGMYIGSTGPKGLHHLIFEVVDNSIDEALAGFCDYIEVVIHA 67

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +  +TV DNGRGIPV+ HP+   +  LE++LT LHAGGKF  + Y+ISGGLHGVG+SVVN
Sbjct: 68  DNSVTVSDNGRGIPVDIHPQV-GRPALEVVLTRLHAGGKFGGTQYKISGGLHGVGVSVVN 126

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS  + V V R+   + Q+F RG+    LE  ++  ++ GTR+TF PDP IF +   F 
Sbjct: 127 ALSRRMEVEVKREGYRYRQEFERGLATGELELLDEA-DETGTRVTFIPDPDIFEE-VEFQ 184

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              + K  +  ++L+  V      ++   +K        + + GG++ +++    ++ ++
Sbjct: 185 YDVVAKRLRELSFLNAGVTLVLRDERTGRDKV-------YQYAGGIRDFVRHLNLHKEVL 237

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIK 343
            ++    +  K G     V        +   I SY NTI T +GGTHE+G + ALTR I 
Sbjct: 238 PADPIYVEDHKNGVW-VEVAVQYVVNSDRELIFSYANTIHTVDGGTHEAGFKSALTRTIN 296

Query: 344 KYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDP 403
            YA      +  S+  +D+      +++V + EP+F GQTKTKL + + +  V+  +   
Sbjct: 297 DYARKYNLVKNDSLSGEDIREGLTAVINVKVPEPQFEGQTKTKLGNSEVRGLVDWVVSQR 356

Query: 404 FDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAH 462
              YL ++P EA ++++  V+        RR +    RK+ +    LPGKLADCS+    
Sbjct: 357 LAAYLEEHPTEARQIVQRAVVASRAREAARRARELTKRKSLLESATLPGKLADCSRRDPQ 416

Query: 463 GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
            +EL++VEGDSAGGSAKQ R+R  QA+LPLRGKILN   A  +K+  N++I  L+ A+G 
Sbjct: 417 HSELYLVEGDSAGGSAKQGRDREFQAILPLRGKILNAEKARRDKLLGNEEIRALITAIGT 476

Query: 523 RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI 582
                +     RY +++IMTDADVDG+HI +LLLTFFY+ M  LI+  ++++  PPL+R+
Sbjct: 477 GFGEDFDLAKARYHRIVIMTDADVDGSHIRTLLLTFFYRYMKPLIDAGYVYIAQPPLYRV 536

Query: 583 T-QGTKS-VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           + +G K+ VY + ++  ++    F+++G+    I R+KGLGEM   QL +T +D   RT+
Sbjct: 537 SGKGRKNGVYLYSDQQLEQF---FRENGRQNWSIQRYKGLGEMNPEQLWDTTLDPENRTM 593

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           L+V +   L      +  ++ LMG + + R +FIQ+ A  + ++ 
Sbjct: 594 LQVTLEDAL----AAEQLLSTLMGEQVEPRREFIQQHAREVRNLD 634


>gi|212692798|ref|ZP_03300926.1| hypothetical protein BACDOR_02296 [Bacteroides dorei DSM 17855]
 gi|237709487|ref|ZP_04539968.1| DNA gyrase B subunit [Bacteroides sp. 9_1_42FAA]
 gi|237724917|ref|ZP_04555398.1| DNA gyrase B subunit [Bacteroides sp. D4]
 gi|265754693|ref|ZP_06089745.1| DNA gyrase, B subunit [Bacteroides sp. 3_1_33FAA]
 gi|212664587|gb|EEB25159.1| hypothetical protein BACDOR_02296 [Bacteroides dorei DSM 17855]
 gi|229436655|gb|EEO46732.1| DNA gyrase B subunit [Bacteroides dorei 5_1_36/D4]
 gi|229456543|gb|EEO62264.1| DNA gyrase B subunit [Bacteroides sp. 9_1_42FAA]
 gi|263234807|gb|EEZ20375.1| DNA gyrase, B subunit [Bacteroides sp. 3_1_33FAA]
          Length = 654

 Score =  638 bits (1646), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/662 (40%), Positives = 392/662 (59%), Gaps = 23/662 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
              +  +NY AS+I++LEGLE VR RP MYIG   EK LHHL  EV+DN++DE +AGY +
Sbjct: 5   EKINGENNYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLVYEVVDNSIDEALAGYCD 64

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            IEV+++ +  +TV DNGRGIPV+ H K   KS LE+++T LHAGGKFD  +Y++SGGLH
Sbjct: 65  HIEVTINEDNSITVQDNGRGIPVDFHEK-EKKSALEVVMTVLHAGGKFDKGSYKVSGGLH 123

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+S VNALS  +   V R   I+ Q++S G PL  +++     +  GT+ TF PD  I
Sbjct: 124 GVGVSCVNALSTHMTTQVFRGGKIYQQEYSCGHPLYSVKEVG-TADITGTKQTFWPDDTI 182

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     +    L    +  AYL+  +    +  + I E+ G  +KE F+   G+K +++ 
Sbjct: 183 FTVT-EYKFDILQARMRELAYLNKGITISLTD-RRIKEEDGSFKKEIFHSDEGVKEFVRF 240

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              N   +  ++    TEK  T    +E AI +       + SY N I T EGGTHE+G 
Sbjct: 241 LNRNNEALIDDVIYLNTEKNNTP---IECAIMYNTGYRESLHSYVNNINTIEGGTHEAGF 297

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +KKYAE T+   K  + I  +D     + ++SV + EP+F GQTKTKL + + 
Sbjct: 298 RSALTRVLKKYAEDTKALEKAKVEISGEDFREGLIAVISVKVAEPQFEGQTKTKLGNSEV 357

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
              V  A+ +   +YL ++P EA ++++ VI  +  R+  RK RE  ++ + +    LPG
Sbjct: 358 SGAVNQAVGEALTYYLEEHPKEAKQIVDKVILAATARIAARKARESVQRKSPMGGGGLPG 417

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS       ELF+VEGDSAGGSAKQ R+R+ QA+LPLRGKILNV  A   K   + 
Sbjct: 418 KLADCSSRNPEECELFLVEGDSAGGSAKQGRSRAFQAILPLRGKILNVEKAMWHKAFESD 477

Query: 512 QIMDLVQALGCRT-------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           ++ +++ ALG R          +   + LRY KV+IMTDADVDG+HI +L++T FY+ M 
Sbjct: 478 EVNNIITALGVRFGVDGNDDSKKANIDKLRYHKVVIMTDADVDGSHIDTLIMTLFYRYMP 537

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
           ++IE  HL++ +PPL++ ++G  S Y + EE +Q  ++++    +  I   R+KGLGEM 
Sbjct: 538 EIIENGHLYIANPPLYKCSKGKISEYCYTEEARQAFIQKYGDGQENGIHTQRYKGLGEMN 597

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
             QL ET M+   R L +V I+    +  +     + LMG     R +FI++ A++  ++
Sbjct: 598 PEQLWETTMNPETRILKQVTID----NAANVDYIFSMLMGDDVAPRREFIEKNATYA-NI 652

Query: 685 GT 686
             
Sbjct: 653 DA 654


>gi|257457903|ref|ZP_05623062.1| DNA gyrase, B subunit [Treponema vincentii ATCC 35580]
 gi|257444616|gb|EEV19700.1| DNA gyrase, B subunit [Treponema vincentii ATCC 35580]
          Length = 638

 Score =  638 bits (1646), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/650 (38%), Positives = 377/650 (58%), Gaps = 24/650 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y A +I +L+GL+ VR RPGMYIG T    LHHL  EV+DN +DE +AGY + I V L+
Sbjct: 5   SYSAENITVLKGLDAVRKRPGMYIGSTGPDGLHHLVYEVVDNCIDEAMAGYCDTILVVLE 64

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            N  + V DNGRGIPV+ HP+    S LE++LT LHAGGKFD  +Y++SGGLHGVG+SVV
Sbjct: 65  KNDTVRVEDNGRGIPVDIHPE-EGVSALELVLTRLHAGGKFDKGSYKVSGGLHGVGVSVV 123

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  +   V R    + QKF+ G PL P+ K+ + +  RGT I +  DP IF +   +
Sbjct: 124 NALSTSMEAIVCRDGFEYVQKFALGEPLGPVTKRGETQK-RGTTIRWTADPSIFTETTTY 182

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L    +  A+L+  +K     ++        P++  F F GGL  +++   E++ +
Sbjct: 183 NFDVLAVRLRELAFLNNTIKITLRDER-----LSTPKEVTFAFDGGLSHFVRYLNESKQV 237

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +  E    + EK       VE A+ + +     I S+ N I T EGGTH  G + ALTR 
Sbjct: 238 LPKEPIYFEGEKNDV---VVEIAMQYNDGYKENILSFVNDINTREGGTHLEGFKTALTRV 294

Query: 342 IKKYAEL-----TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           + ++ +       + ++   ++ +D+      +LSV + EP+F GQTKTKL + + +  V
Sbjct: 295 MNEFLKKNAKLSKKMEKEEKLMGEDVRAGLTAVLSVKVPEPQFEGQTKTKLGNSEVRSIV 354

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
           +  + +    +  QNPIE  K+LE  +  +  R+  RK +E   RK+ +    LPGKLAD
Sbjct: 355 DTFINEKLTLFFEQNPIEIDKILEKAVGEATARIAARKAKEATRRKSGLDSFGLPGKLAD 414

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS       E++IVEGDSAGGSAK+ R+   QA+LPL GK+LNV     +K+ NN+++  
Sbjct: 415 CSSKDPEKCEVYIVEGDSAGGSAKKGRDSKTQAILPLWGKMLNVEKTRLDKVLNNEKLQP 474

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++  LG      +  + +RY K+IIM DADVDG+HI +LLLTFF++ M +LIE   ++L 
Sbjct: 475 IIATLGTGIGEDFNLDKIRYHKIIIMADADVDGSHIRTLLLTFFFRYMPELIEHGFVYLA 534

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL++I+   K  Y +D+  +  IL E  +       + R+KGLGEM  +QL ET MD 
Sbjct: 535 MPPLYKISYNKKEWYVYDDSERDSILNEIGRS--VSPAVQRYKGLGEMDGTQLWETTMDP 592

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +R ++RV ++  +    +     + LMG + + R KFI+E A +  ++ 
Sbjct: 593 ARRKMMRVTLSDAV----EADRIFSTLMGEEVEPRRKFIEENAVYA-NLD 637


>gi|150003955|ref|YP_001298699.1| DNA gyrase B subunit [Bacteroides vulgatus ATCC 8482]
 gi|254880798|ref|ZP_05253508.1| DNA gyrase B subunit [Bacteroides sp. 4_3_47FAA]
 gi|294775119|ref|ZP_06740648.1| DNA gyrase, B subunit [Bacteroides vulgatus PC510]
 gi|319639808|ref|ZP_07994538.1| B subunit [Bacteroides sp. 3_1_40A]
 gi|149932379|gb|ABR39077.1| DNA gyrase B subunit [Bacteroides vulgatus ATCC 8482]
 gi|254833591|gb|EET13900.1| DNA gyrase B subunit [Bacteroides sp. 4_3_47FAA]
 gi|294451163|gb|EFG19634.1| DNA gyrase, B subunit [Bacteroides vulgatus PC510]
 gi|317388625|gb|EFV69474.1| B subunit [Bacteroides sp. 3_1_40A]
          Length = 654

 Score =  638 bits (1646), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/662 (40%), Positives = 393/662 (59%), Gaps = 23/662 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
              +  +NY AS+I++LEGLE VR RP MYIG   EK LHHL  EV+DN++DE +AGY +
Sbjct: 5   EKINGENNYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLVYEVVDNSIDEALAGYCD 64

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            IEV+++ +  +TV DNGRGIPV+ H K   KS LE+++T LHAGGKFD  +Y++SGGLH
Sbjct: 65  HIEVTINEDNSITVQDNGRGIPVDFHEK-EKKSALEVVMTVLHAGGKFDKGSYKVSGGLH 123

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+S VNALS  +   V R   I+ Q++S G PL  +++     +  GT+ TF PD  I
Sbjct: 124 GVGVSCVNALSTHMTTQVFRGGKIYQQEYSCGHPLYSVKEVG-TADITGTKQTFWPDDTI 182

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     +    L    +  AYL+  +    +  + I E+ G  +KE F+   G+K +++ 
Sbjct: 183 FTVT-EYKFDILQARMRELAYLNKGITISLTD-RRIKEEDGSFKKEIFHSDEGVKEFVRF 240

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              N   + +++    TEK  T    +E AI +       + SY N I T EGGTHE+G 
Sbjct: 241 LNRNNEALINDVIYLNTEKNNTP---IECAIMYNTGYRESLHSYVNNINTIEGGTHEAGF 297

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +KKYAE T+   K  + I  +D     + ++SV + EP+F GQTKTKL + + 
Sbjct: 298 RSALTRVLKKYAEDTKALEKAKVEISGEDFREGLIAVISVKVAEPQFEGQTKTKLGNSEV 357

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
              V  A+ +   +YL ++P EA ++++ VI  +  R+  RK RE  ++ + +    LPG
Sbjct: 358 SGAVNQAVGEALTYYLEEHPKEAKQIVDKVILAATARIAARKARESVQRKSPMGGGGLPG 417

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS       ELF+VEGDSAGGSAKQ R+R+ QA+LPLRGKILNV  A   K   + 
Sbjct: 418 KLADCSSRNPEECELFLVEGDSAGGSAKQGRSRAFQAILPLRGKILNVEKAMWHKAFESD 477

Query: 512 QIMDLVQALGCRT-------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           ++ +++ ALG R          +   + LRY KV+IMTDADVDG+HI +L++T FY+ M 
Sbjct: 478 EVNNIITALGVRFGVDGNDDSKKANIDKLRYHKVVIMTDADVDGSHIDTLIMTLFYRYMP 537

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
           ++IE  HL++ +PPL++ ++G  S Y + EE +Q  ++++    +  I   R+KGLGEM 
Sbjct: 538 EIIENGHLYIANPPLYKCSKGKISEYCYTEEARQAFIQKYGDGQENGIHTQRYKGLGEMN 597

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
             QL ET M+   R L +V I+    +  +     + LMG     R +FI++ A++  ++
Sbjct: 598 PEQLWETTMNPETRILKQVTID----NAANVDYIFSMLMGDDVAPRREFIEKNATYA-NI 652

Query: 685 GT 686
             
Sbjct: 653 DA 654


>gi|145578007|gb|ABP82722.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar finitimus]
          Length = 632

 Score =  638 bits (1645), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/649 (40%), Positives = 382/649 (58%), Gaps = 21/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            ++YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R+  I  QK+ RGIP++ L+      ++ GT   F+PDP+IF +  
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E       K G     VE A+ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVDGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K++E   +        ++ +    RK A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKMVEKGTMAARARVAAKKARELTRRKRALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF+I QG K  YA++E+  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKIQQGKKIQYAYNEKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632


>gi|221632838|ref|YP_002522060.1| DNA gyrase subunit B [Thermomicrobium roseum DSM 5159]
 gi|221156882|gb|ACM06009.1| DNA gyrase, B subunit [Thermomicrobium roseum DSM 5159]
          Length = 636

 Score =  638 bits (1645), Expect = e-180,   Method: Composition-based stats.
 Identities = 274/654 (41%), Positives = 394/654 (60%), Gaps = 26/654 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            +++  YDAS+I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AGY + I
Sbjct: 2   TNSTTRYDASAIQVLEGLEAVRRRPGMYIGSTDIRGLHHLIYEIVDNSVDEALAGYCDRI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           EV++  +G + V D+GRGIPV+ HPK   KS LE+I+TTLHAGGKF    Y++SGGLHGV
Sbjct: 62  EVTIHRDGSVRVWDDGRGIPVDIHPKV-GKSALEVIMTTLHAGGKFGGGGYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIF 216
           G SVVNALS+ L VTV R   I+ Q++ RG+P++P+E   +   +  GT   F PD  IF
Sbjct: 121 GASVVNALSEWLEVTVRRDGKIYHQRYERGVPVTPVETIGETTPDDHGTETVFLPDRLIF 180

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                + +  LL+  +  AYL+  +   +  ++   +         FYF GG+ ++++  
Sbjct: 181 RS-LDYQSDVLLQRFREVAYLTSGLTIHFVDERTDLD-------MTFYFEGGIVSFVRHL 232

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
              + ++  + F  K E+ G     VE AI + +       ++ N I T +GGTH +G +
Sbjct: 233 NRTKEVLQPQPFYVKREQNG---CLVEVAIQYTDGYAESTHAFANNINTIDGGTHVTGFK 289

Query: 336 VALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR I +YA      +    ++  +D+      I+SV + EP+F GQTKTKL + +  
Sbjct: 290 AALTRAINEYARRHGLLKENDPNLSGEDVREGLTAIISVMLPEPQFEGQTKTKLGNAEVA 349

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
             V++ + + F  YL ++P  A +++E  +  +  R   RK RE V RK A+    LPGK
Sbjct: 350 GIVQSIVYESFTSYLEEHPAIARRIIEKCLTAARAREAARKARELVQRKGALDTFSLPGK 409

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC++      EL+IVEGDSAGGSAKQ R+R  QAVLPLRGKILNV  A  +++ +N++
Sbjct: 410 LADCTERDPAKAELYIVEGDSAGGSAKQGRDRRFQAVLPLRGKILNVEKARLDRMLHNEE 469

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  L+ ALG     QY    LRY +VI+MTDADVDGAHI +LLLTFF++ +  LI   HL
Sbjct: 470 IRALITALGTGIGDQYDRSKLRYHRVILMTDADVDGAHIRTLLLTFFFRYLEGLIIDGHL 529

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK-IEISRFKGLGEMLASQLKET 631
           ++  PPL+R+  G +  Y + +E +  IL      G GK  +I R+KGLGEM   QL ET
Sbjct: 530 YIAQPPLYRLQSGKEVHYVYSDEERDAILNR----GDGKTWDIQRYKGLGEMNPEQLWET 585

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD  +RTLL+V I   +       ++ N LMG+    R +FIQ  A  + ++ 
Sbjct: 586 TMDPARRTLLQVTIEDAVR----ADETFNMLMGSAVPPRKRFIQAHAREVRNLD 635


>gi|325299173|ref|YP_004259090.1| DNA gyrase, B subunit [Bacteroides salanitronis DSM 18170]
 gi|324318726|gb|ADY36617.1| DNA gyrase, B subunit [Bacteroides salanitronis DSM 18170]
          Length = 654

 Score =  638 bits (1645), Expect = e-180,   Method: Composition-based stats.
 Identities = 263/661 (39%), Positives = 389/661 (58%), Gaps = 23/661 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
                + Y ASSI++LEGLE VR RP MYIG   EK LHHL  EV+DN++DE +AGY   
Sbjct: 6   TPKGGNTYSASSIQVLEGLEAVRKRPAMYIGDISEKGLHHLVYEVVDNSIDEALAGYCTH 65

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV+++ +  +TV DNGRGIPV+ H K   KS LE+++T LHAGGKFD  +Y++SGGLHG
Sbjct: 66  IEVTINEDNSITVQDNGRGIPVDFHEK-EKKSALEVVMTVLHAGGKFDKGSYKVSGGLHG 124

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+S VNALS  +   V R   I+ Q+++ G PL P+++     +  GTR TF PD  IF
Sbjct: 125 VGVSCVNALSTHMITNVFRNGKIYQQEYACGKPLYPVKEVG-TTDITGTRQTFWPDASIF 183

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                +    L    +  AYL+  +    +  +E  E+ G  ++E F+   G+K +++  
Sbjct: 184 TVT-EYKYNILQARMRELAYLNKGITITLTDKRE-KEEDGSYKQEVFHSEEGVKEFVRFL 241

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
               + +  ++    TEK+G     +E AI +       + SY N I T EGGTHE+G R
Sbjct: 242 NSTNTPLIDDVIYLNTEKQGVP---IECAIMYNTGFRENLHSYVNNINTIEGGTHEAGFR 298

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR +KKYAE ++   K  + I  +D     + ++SV + EP+F GQTKTKL + +  
Sbjct: 299 TALTRVLKKYAEDSKALEKAKVEISGEDFREGLIAVISVKVAEPQFEGQTKTKLGNNEVS 358

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGK 452
             V  A+ +   +YL ++P EA  +++ V+  +  R+  RK RE  ++ + +    LPGK
Sbjct: 359 GAVNQAVGEALTYYLEEHPKEAKLIVDKVVLAATARIAARKARESVQRKSPMGGGGLPGK 418

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS       ELF+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A   K   + +
Sbjct: 419 LADCSSRTPEECELFLVEGDSAGGSAKQGRSRQFQAILPLRGKILNVEKAMWHKAFESDE 478

Query: 513 IMDLVQALGCRT-------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           + +++QALG R          +   + LRY KVIIMTDADVDG+HI +L++T FY+ M +
Sbjct: 479 VNNIIQALGVRFGVDDSEDSKKANIDKLRYNKVIIMTDADVDGSHIDTLIMTLFYRYMPE 538

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           +I+  HL++ +PPL++ ++G  S Y + +E +Q  ++++    +  I   R+KGLGEM  
Sbjct: 539 VIQGGHLYIANPPLYKCSKGKVSEYCYTDEERQAFMQKYGDGTETGIHTQRYKGLGEMNP 598

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL ET M+   R L +V I     +  +     + LMG     R +FI++ A++  ++ 
Sbjct: 599 EQLWETTMNPETRILKQVSIE----NAAEADYIFSMLMGDDVAPRREFIEKHATYA-NID 653

Query: 686 T 686
            
Sbjct: 654 A 654


>gi|319404202|emb|CBI77795.1| topoisomerase protein [Bartonella rochalimae ATCC BAA-1498]
          Length = 692

 Score =  638 bits (1645), Expect = e-180,   Method: Composition-based stats.
 Identities = 428/695 (61%), Positives = 532/695 (76%), Gaps = 14/695 (2%)

Query: 1   MTDDSIDLFSTLPP---------QSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRI 51
           M+D++ DLFS L           +++  S   +++     + A  N    D Y+A SIR+
Sbjct: 1   MSDNNKDLFSILNNAQSRIEAKEKNKPISVTPQETSRSISTSASKNDIKKDEYNALSIRV 60

Query: 52  LEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVD 111
           LEGLEPVR+RPGMYIGGTD KALHHLFSE+IDNAMDE +AGYA+LI+VSLD  G+LTV D
Sbjct: 61  LEGLEPVRLRPGMYIGGTDSKALHHLFSEIIDNAMDEAVAGYADLIDVSLDEQGYLTVTD 120

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171
           NGRGIPVENHP+ P+KSTLE+I+T LH+G KFD   Y+ SGGLHGVGISVVNALSD++ V
Sbjct: 121 NGRGIPVENHPQMPDKSTLEVIMTQLHSGAKFDGKAYQTSGGLHGVGISVVNALSDDMEV 180

Query: 172 TVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMT 231
            VAR   ++ Q+FSRGIP S LE    V N+RGTR+ F PD KIFG+K  F+  ++ KM 
Sbjct: 181 EVARDRKLYRQRFSRGIPQSGLENLGDVYNRRGTRVRFHPDSKIFGEKVAFEPEKIYKMA 240

Query: 232 QSKAYLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            SKAYL G VK  W+CD ++ E    IPEK  F+FP GLK YL + L+N   ++S++F+G
Sbjct: 241 LSKAYLFGGVKIRWNCDSKMLEGIKNIPEKAVFHFPDGLKDYLLSSLKNEYRVTSKVFSG 300

Query: 291 KTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
           KT++ G H G+VEWAIAW   +  + SYCNTI T EGGTHE+GLR AL R +K YAEL  
Sbjct: 301 KTKQHGAH-GSVEWAIAWYGGDACVHSYCNTIPTGEGGTHEAGLRQALLRSLKAYAELIG 359

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
           NKR+  I SDD+MISA+ ILSVFIREPEF GQTK +L +++AQR VENA+RDPFDH+L  
Sbjct: 360 NKRSAIITSDDVMISAIAILSVFIREPEFVGQTKDRLATIEAQRIVENAIRDPFDHWLAN 419

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           +P EATKLL+W+IER+EER++RR+ +E+NRKTA+RKLRLPGKLADCSQN A G ELFIVE
Sbjct: 420 SPQEATKLLDWIIERAEERVKRRQDKEINRKTAVRKLRLPGKLADCSQNSAVGAELFIVE 479

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530
           GDSAGGSAKQARNR NQA+LPLRGKILNVASA  EK+  +Q I DL+ ALGC  RS+YRE
Sbjct: 480 GDSAGGSAKQARNRVNQAILPLRGKILNVASAAREKMSASQAINDLILALGCGIRSKYRE 539

Query: 531 EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVY 590
           +DLRYE++IIMTDADVDGAHIASLL+TFF+QEM DLI Q HL+L  PPL+RI+QG K  Y
Sbjct: 540 DDLRYERIIIMTDADVDGAHIASLLITFFFQEMPDLIRQGHLYLAVPPLYRISQGGKVAY 599

Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
           A D+ HK ++L+  +  GK KIEI RFKGLGEM A QLKET MD  KRTLLR+ I  D  
Sbjct: 600 ARDDNHKDELLKT-EFTGKAKIEIGRFKGLGEMRAEQLKETTMDPKKRTLLRIAI--DAV 656

Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +++T++++  LMGTK + RF+FIQE ++F D++ 
Sbjct: 657 DMQETKNTVESLMGTKPEARFRFIQENSTFADNLD 691


>gi|306839001|ref|ZP_07471822.1| DNA topoisomerase IV, B subunit [Brucella sp. NF 2653]
 gi|306405907|gb|EFM62165.1| DNA topoisomerase IV, B subunit [Brucella sp. NF 2653]
          Length = 680

 Score =  638 bits (1644), Expect = e-180,   Method: Composition-based stats.
 Identities = 416/645 (64%), Positives = 517/645 (80%), Gaps = 5/645 (0%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           D+Y+ASSIR+LEGLEPVR+RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+AN IEV++
Sbjct: 39  DDYNASSIRVLEGLEPVRLRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHANFIEVTV 98

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           D  GF+TV DNGRGIPV+ HP+ P KSTLE+I+T LHAGGKFD   YE SGGLHGVG+SV
Sbjct: 99  DKEGFVTVSDNGRGIPVDEHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVSV 158

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALSD L V VAR   ++ Q FSRGIP   LE+  +V N+RGTR+ F PDP+IFG  A 
Sbjct: 159 VNALSDVLEVEVARNRRLYRQCFSRGIPQGGLEELGEVHNRRGTRVRFHPDPEIFGKNAH 218

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENR 280
           FD  RL +M +SKAYL G V+  W+CD  + + K   P K  F+FPGGLK YL+  L   
Sbjct: 219 FDPHRLYRMARSKAYLFGGVEIRWNCDPSLLDPKKETPGKAVFHFPGGLKDYLEASLGKE 278

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
             ++ E+F G+TEK+G H G VEWA+AW   +  + SYCNTI T +GGTHE+GLR+ALTR
Sbjct: 279 HQVTREVFAGRTEKQGGH-GAVEWAVAWFGGDGFVHSYCNTIPTGDGGTHEAGLRIALTR 337

Query: 341 GIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
           G+K YAELT NKRA  I +DD+M+SA G+LSVFIREPEF GQTK KL +++AQR VENA+
Sbjct: 338 GLKAYAELTNNKRASIITTDDVMVSAAGMLSVFIREPEFVGQTKDKLATVEAQRIVENAI 397

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
           RDPFDH+L  +P EA++LLEWVI+R++ERLRRR+++E  RK+A RKLRLPGKLADC+QN 
Sbjct: 398 RDPFDHWLAASPQEASRLLEWVIDRADERLRRRQEKETVRKSATRKLRLPGKLADCTQNA 457

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
           A G ELFIVEGDSAGGSAKQARNR+NQA+LPLRGKILNVASAG EK+  NQQI DLVQAL
Sbjct: 458 AAGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLTANQQIADLVQAL 517

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           GC TR  YRE+DLRY++VI+MTDADVDGAHIASLL+TFFYQEM +LI   HL+L  PPL+
Sbjct: 518 GCGTRKNYREDDLRYDRVIVMTDADVDGAHIASLLITFFYQEMPELIRNGHLYLAVPPLY 577

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           R++QG K+ YA D+ HK+++L      G+GKIEI RFKGLGEM A QLKET MD  KRTL
Sbjct: 578 RLSQGGKTAYARDDAHKEELLRTVF-TGRGKIEIGRFKGLGEMRADQLKETTMDPAKRTL 636

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           LRV+++++     +T+++++ LMGTK + RF+FIQ+RA+F++++ 
Sbjct: 637 LRVQVDEEYGD--ETRNTVDDLMGTKPEARFRFIQDRAAFVEELD 679


>gi|220930856|ref|YP_002507764.1| DNA gyrase, B subunit [Halothermothrix orenii H 168]
 gi|219992166|gb|ACL68769.1| DNA gyrase, B subunit [Halothermothrix orenii H 168]
          Length = 642

 Score =  638 bits (1644), Expect = e-180,   Method: Composition-based stats.
 Identities = 262/652 (40%), Positives = 381/652 (58%), Gaps = 23/652 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +   NY+A  I++LEGLE VR RPGMYIG T    LHHL  EV+DN++DE + GY +LIE
Sbjct: 8   NNKGNYEAEHIQVLEGLEAVRKRPGMYIGSTGMDGLHHLVYEVVDNSIDEAMQGYCDLIE 67

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V +     +TV DNGRGIPV+ HPK   K  +E++LT LHAGGKF    Y++SGGLHGVG
Sbjct: 68  VIIKPGNIITVKDNGRGIPVDPHPKL-KKPAVEVVLTVLHAGGKFGGDGYKVSGGLHGVG 126

Query: 159 ISVVNALSDELHVT-VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           +SVVNALS  L V    R   ++ QK++RGIP+  L+   +     GT I+F+PD +IF 
Sbjct: 127 VSVVNALSKWLEVEVCWRDGKVYHQKYNRGIPVYDLKVIGECSG-TGTTISFKPDEEIFE 185

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           D   F    L +  +  A+L+  V+     ++E         ++E+ F GGL ++++   
Sbjct: 186 DVN-FKYKVLAQRLKELAFLNKGVRIILRDEREE-----EARQDEYCFEGGLVSFVKYLN 239

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           +N++ +  E F  + + +      VE AI + +     I ++ N I T EGGTH SG + 
Sbjct: 240 KNKNPLFDEPFYLEEKDEN---REVEIAIQYNDGYVDSIFTFANNINTREGGTHLSGFKS 296

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  YA       +   ++  +D+      I+SV + +P+F GQTKTKL + + + 
Sbjct: 297 ALTRTVNDYARSKGILKENDENLTGEDIREGITAIISVRLTDPQFEGQTKTKLGNSEIRG 356

Query: 395 TVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
            V++AL      +L +NP     ++ +        +  ++ +    RK A+    LPGKL
Sbjct: 357 FVDSALSSNLRTFLEENPKIGKIIVEKARSAARARKAAKKARELTRRKGALSNTALPGKL 416

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS      TE++IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A   KI NN++I
Sbjct: 417 ADCSSRDTENTEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARLNKILNNEEI 476

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             L+ A+G     ++     RY K+IIMTDADVDGAHI +LLLTFFY+ M  LIE   ++
Sbjct: 477 RALITAIGTGIGDEFDINKARYGKIIIMTDADVDGAHIRTLLLTFFYRYMRPLIENGMIY 536

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           +  PPL+++ +G +  Y +++   QK+L +    G+ KI + R+KGLGEM   QL ET M
Sbjct: 537 IAQPPLYKVKKGRREEYVYNDRGLQKLLNDI---GRDKITLQRYKGLGEMNPDQLWETTM 593

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +   R +L+V+I   +       ++   LMG K   R +FIQE A  + ++ 
Sbjct: 594 NPENRIILKVKIEDAVV----ADETFTTLMGDKVQPRREFIQEHAHEVQNLD 641


>gi|198274299|ref|ZP_03206831.1| hypothetical protein BACPLE_00442 [Bacteroides plebeius DSM 17135]
 gi|198272789|gb|EDY97058.1| hypothetical protein BACPLE_00442 [Bacteroides plebeius DSM 17135]
          Length = 654

 Score =  638 bits (1644), Expect = e-180,   Method: Composition-based stats.
 Identities = 265/661 (40%), Positives = 397/661 (60%), Gaps = 23/661 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            Q++  NY ASSI++LEGLE VR RP MYIG   EK LHHL  EV+DN++DE +AGY   
Sbjct: 6   TQNSGSNYSASSIQVLEGLEAVRKRPAMYIGDISEKGLHHLVYEVVDNSIDEALAGYCTH 65

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV+++ +  +TV DNGRGIPV+ H K   KS LE+++T LHAGGKFD  +Y++SGGLHG
Sbjct: 66  IEVTINEDNSITVQDNGRGIPVDFHEK-EKKSALEVVMTVLHAGGKFDKGSYKVSGGLHG 124

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+S VNALS  +   V R   I+ Q++  G PL  +++     +  GTR TF PD  IF
Sbjct: 125 VGVSCVNALSTHMTTNVFRNGKIYQQEYECGKPLYAVKEVG-TTDITGTRQTFWPDGSIF 183

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                +  + L    +  AYL+  +    +  + + E+ G  ++E+F+   G+K +++  
Sbjct: 184 TVT-EYKYSILQARMRELAYLNKGITITLTDKR-VKEEDGSYKQEKFHSEEGVKEFVRFL 241

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
             N + +  ++    TEK+G     +E AI +       + SY N I T EGGTHE+G R
Sbjct: 242 NSNNTPLIDDVIYLNTEKQGIP---IECAIMYNTGFRENLHSYVNNINTIEGGTHEAGFR 298

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
           +ALTR +KKYAE ++   K  + I  +D     + ++SV + EP+F GQTKTKL + +  
Sbjct: 299 MALTRVLKKYAEESKALEKAKVEISGEDFREGLIAVISVKVSEPQFEGQTKTKLGNNEVS 358

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGK 452
             V  A+ +   +YL ++P EA  +++ V+  +  R+  RK RE  ++ + +    LPGK
Sbjct: 359 GAVNQAVGEALTYYLEEHPKEAKIIVDKVVLAATARVAARKARESVQRKSPMGGGGLPGK 418

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS  +A   ELF+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A   K   + +
Sbjct: 419 LADCSSRVAEECELFLVEGDSAGGSAKQGRSRQFQAILPLRGKILNVEKAMWHKAFESDE 478

Query: 513 IMDLVQALGCRT-------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           + +++QALG R          +   + LRY KVIIMTDADVDG+HI +L++T FY+ M +
Sbjct: 479 VNNIIQALGVRFGVDGEEDSKKANIDKLRYHKVIIMTDADVDGSHIDTLIMTLFYRYMPE 538

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           +I+  HL++ +PPL++ ++G  S Y + +E +Q  ++++ +  +  I   R+KGLGEM  
Sbjct: 539 VIQGGHLYIATPPLYKCSKGKISEYCYTDEARQAFIQKYGEGNEQGIHTQRYKGLGEMNP 598

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL ET M+   R L +V I     +  +     + LMG     R +FI++ A++  ++ 
Sbjct: 599 EQLWETTMNPETRILKQVNIE----NAAEADYIFSMLMGDDVGPRREFIEKNATYA-NID 653

Query: 686 T 686
            
Sbjct: 654 A 654


>gi|118589107|ref|ZP_01546514.1| Topoisomerase IV, subunit B:DNA gyrase, subunit B:DNA topoisomerase
           II:DNA gyrase, subunit B, C-terminal:ATP-binding region
           [Stappia aggregata IAM 12614]
 gi|118438436|gb|EAV45070.1| Topoisomerase IV, subunit B:DNA gyrase, subunit B:DNA topoisomerase
           II:DNA gyrase, subunit B, C-terminal:ATP-binding region
           [Stappia aggregata IAM 12614]
          Length = 681

 Score =  638 bits (1644), Expect = e-180,   Method: Composition-based stats.
 Identities = 402/686 (58%), Positives = 512/686 (74%), Gaps = 7/686 (1%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           M+             +  + ++   + + P   A    + SD+Y A+ I +LEGLEPVR 
Sbjct: 1   MSAKDDLFAGNAAVAAPMTRDEPAPAPQKPRPVAP--VAVSDDYSAADIEVLEGLEPVRR 58

Query: 61  RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+A  I+VSL  +G+LT+ DNGRGIPV+ 
Sbjct: 59  RPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHATWIDVSLSADGYLTITDNGRGIPVDP 118

Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
           HPKF +KS LE+I+TTLHAGGKFD+  YE SGGLHGVGISVVNALS+EL V VAR   ++
Sbjct: 119 HPKFKDKSALEVIMTTLHAGGKFDSKVYETSGGLHGVGISVVNALSEELIVEVARSRKLY 178

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
            Q F RG    PLE     +N+RGT+++F+PD +IFG  A F  ARLLKM +SKAYL G 
Sbjct: 179 RQIFRRGHAQGPLELVGDTQNRRGTQVSFKPDDQIFGKGAKFIPARLLKMARSKAYLFGG 238

Query: 241 VKTCWSCDKE-IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
           V+  W C  E ++EK   P +  F+FPGGL+ +L  +L     +  ++F G+T+  G H 
Sbjct: 239 VEIRWHCAPELLSEKDETPSEAVFHFPGGLRDFLNERLSKERRVVDDVFFGRTDNAGKH- 297

Query: 300 GTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359
           G+VEWA++W   +  + SYCNT+ T EGGTHE+G R AL RG+K Y ELT NK+A  I  
Sbjct: 298 GSVEWAVSWYAGDGFVNSYCNTVPTPEGGTHEAGFRYALLRGLKAYGELTNNKKASIITG 357

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD+M SA G+LSVFIREPEF GQTK KL + +A R  E A+RD FDH+L  +P +A KLL
Sbjct: 358 DDVMTSAGGMLSVFIREPEFVGQTKDKLATNEATRITETAVRDAFDHWLTASPNQANKLL 417

Query: 420 EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           EWVI+R++ERLRRR++++V RKTA+RKLRLPGKLADCS N + GTELFIVEGDSAGGSAK
Sbjct: 418 EWVIDRADERLRRRQEKDVARKTAVRKLRLPGKLADCSANQSDGTELFIVEGDSAGGSAK 477

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
           QARNRSNQAVLPLRGKILNVA+AG +K+  NQQ+ DL+QALGC TRSQYRE DLRYEK++
Sbjct: 478 QARNRSNQAVLPLRGKILNVANAGRDKLVANQQLADLIQALGCGTRSQYRESDLRYEKIV 537

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599
           IMTDADVDGAHIASLL+TFFY+EM +LI   HLFL  PPL+R++QG K++YA D+ HK +
Sbjct: 538 IMTDADVDGAHIASLLITFFYREMPELIRGGHLFLAVPPLYRLSQGGKTLYARDDAHKDE 597

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
           ++E   K GK K+EI RFKGLGEML +QLKET MD +KRT+L+V + +D  ++ DT D++
Sbjct: 598 LMETVFK-GKSKVEIGRFKGLGEMLPAQLKETTMDPSKRTMLKVVVEED--AVTDTNDTV 654

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
            +LMG K + RF+FIQ+ A F +D+ 
Sbjct: 655 ERLMGNKPEARFRFIQDNAEFAEDLD 680


>gi|220932011|ref|YP_002508919.1| DNA gyrase, B subunit [Halothermothrix orenii H 168]
 gi|219993321|gb|ACL69924.1| DNA gyrase, B subunit [Halothermothrix orenii H 168]
          Length = 637

 Score =  638 bits (1644), Expect = e-180,   Method: Composition-based stats.
 Identities = 253/646 (39%), Positives = 377/646 (58%), Gaps = 22/646 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y A  I IL+GLE VR RPGMYIG T  + LHHL  EV+DN++DE +AGY + IEV+++ 
Sbjct: 9   YGAEQIEILKGLEAVRKRPGMYIGSTGIRGLHHLVWEVVDNSIDEYLAGYGDKIEVTINE 68

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +  +TV D GRGIP E HP+       ++++TTLHAGGKF+N++Y++SGGLHGVGISVVN
Sbjct: 69  DNSITVEDWGRGIPAEEHPE-TGLPAAQVVMTTLHAGGKFNNNSYKVSGGLHGVGISVVN 127

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS+ L +T       + Q++ RG P +  +K     N+ GT I+F+PDP+IF     F 
Sbjct: 128 ALSEWLELTTYWNGNEYYQRYERGYPKTKFQKLG-TSNRNGTIISFKPDPEIFDVT-EFK 185

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L    Q  A+L+  +       +    K      E F + GG+K +++   +NR +I
Sbjct: 186 YETLAHRLQESAFLNKELSLILIDKRSDKTKK-----EVFQYDGGIKAFVEYLNKNRQVI 240

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
           + +I   + E        +E A+ + E     I SY N I T +GG H +G + ALT+ I
Sbjct: 241 NEDIIYTEKE---NGDYYIEVALQYNEGYNERIFSYANNINTVDGGYHLTGFKTALTKAI 297

Query: 343 KKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             +A+     +        +D+      +++V +  P+F GQTK+KL + + +  VE+ +
Sbjct: 298 NNFAKQNNLLKQSDPTLTGNDVREGLTAVVNVKLPNPQFEGQTKSKLGNSEIRSIVESNI 357

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQN 459
            D    YL  NP    K+++  I+    R   +K RE   RK A+    LPGKLADC+  
Sbjct: 358 YDYLSLYLDSNPEVGKKIVDKAIQAIRARQASKKARELTRRKNALNSHSLPGKLADCASR 417

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
               +ELF+VEGDSAGGSAKQ RNR  QA+LPL+GKI+NV  A  +KI +N +I  ++ A
Sbjct: 418 KPEKSELFLVEGDSAGGSAKQGRNRHFQAILPLKGKIMNVERARLDKILSNNEIATIISA 477

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           LG     ++  + LRY K+IIMTDADVDGAHIA+LLLT FY+ M +LI++ ++++  PPL
Sbjct: 478 LGTGIGQEFNIDKLRYHKIIIMTDADVDGAHIATLLLTLFYRYMPELIKEGYIYIAQPPL 537

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           ++++      Y + ++  + +  E +        I R+KGLGEM   QL ET M+   R 
Sbjct: 538 YKVSWKKNIRYLYTDKELESLKRELE---NKSYSIQRYKGLGEMNPRQLWETTMNPETRK 594

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           LLR+EI+ ++    +  +   +LMG+ A  R +FI   A  +D++ 
Sbjct: 595 LLRIEIDDEI----EADEIFTRLMGSNASLRREFIISNADMVDELD 636


>gi|291457885|ref|ZP_06597275.1| DNA gyrase, B subunit [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291419429|gb|EFE93148.1| DNA gyrase, B subunit [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 656

 Score =  638 bits (1644), Expect = e-180,   Method: Composition-based stats.
 Identities = 260/652 (39%), Positives = 374/652 (57%), Gaps = 20/652 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
             S+NY A  I+ILEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AGY   I 
Sbjct: 19  KGSENYGADQIQILEGLEAVRKRPGMYIGTTSSRGLHHLVYEIVDNSVDEALAGYCGEIS 78

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+++ +  +TV D+GRGIPV+   K   K  LE++ T LHAGGKF  S Y++SGGLHGVG
Sbjct: 79  VTIEPDNSITVEDDGRGIPVDIQKKA-GKPALEVVFTVLHAGGKFGGSGYKVSGGLHGVG 137

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFG 217
            SVVNALS +L V V R   I+   F RG   +P+         + GT + F+PDP+IF 
Sbjct: 138 ASVVNALSRKLWVRVYRDGKIYQMDFERGKTTAPMRVVGSCEPERHGTSVHFQPDPEIFE 197

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   +D   L    +  A+L+  ++      +E  E     +++ F+F GG+K ++    
Sbjct: 198 ETV-YDFETLKVRLRETAFLTRALRINLKDKREGQE-----QEKSFHFEGGIKEFVSYLN 251

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
             +  + SE+   + EK       VE A+   +     I ++ N I T EGGTH +G + 
Sbjct: 252 RGKDPLYSEVIYCEGEKDKIF---VEVAMQHNDSYTENIYTFVNNINTPEGGTHLTGFKN 308

Query: 337 ALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALT+    YA   +  +    ++  +D+     GI+SV I +P+F GQTK KL + +AQ 
Sbjct: 309 ALTKTFNDYARQNKLLKDSEPNLSGEDIREGLTGIISVKIEDPQFEGQTKQKLGTSEAQT 368

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
            V++ + +   ++L QNP  A  + E  ++ +      R+ +    RK+A+  + LPGKL
Sbjct: 369 AVQSIVSEQLTYFLEQNPSVAKIMCEKSILAQRARAAARKARDLTRRKSALEGVGLPGKL 428

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
            DCS       E+FIVEGDSA G AK+ RN   QAVLPLRGK+LNV  A  ++I  N++I
Sbjct: 429 VDCSSRDPASCEIFIVEGDSALGPAKEGRNVETQAVLPLRGKVLNVQKARLDRIYANEEI 488

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A G      +    LRY K+IIMTDADVDGAHIA+L+LTF Y  M +LI Q H++
Sbjct: 489 KGMITAFGTGINEDFDITKLRYHKIIIMTDADVDGAHIATLMLTFIYNFMPELIRQGHIY 548

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           L  PPLF I +  K  YA+ +E  Q IL E    G    ++SRFKGLGEM   +L ET M
Sbjct: 549 LAQPPLFNIQKNKKHYYAYSDEEYQNILREIGAEGT---DVSRFKGLGEMDTEELAETTM 605

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D   RTLLRV +    +   +   +   LMG + + R +FI++ A +++ + 
Sbjct: 606 DPETRTLLRVNM--AEDDRAELDLTFTTLMGDQVEPRREFIEQNAKYVNHLD 655


>gi|210624032|ref|ZP_03294149.1| hypothetical protein CLOHIR_02101 [Clostridium hiranonis DSM 13275]
 gi|210153239|gb|EEA84245.1| hypothetical protein CLOHIR_02101 [Clostridium hiranonis DSM 13275]
          Length = 633

 Score =  638 bits (1644), Expect = e-180,   Method: Composition-based stats.
 Identities = 255/648 (39%), Positives = 381/648 (58%), Gaps = 22/648 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y AS I++LEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AG  + I V++
Sbjct: 3   QEYGASQIQVLEGLEAVRKRPGMYIGSTGPRGLHHLVYEVVDNSIDEALAGNCSKIYVAI 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G +TV D+GRGIPVE HPK    STLE +LT LHAGGKF    Y++SGGLHGVG+SV
Sbjct: 63  NADGSITVEDDGRGIPVEVHPK-TGLSTLETVLTVLHAGGKFGGGGYKVSGGLHGVGVSV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+ L   V R    + Q++ +G P + LE   +  +  GT I+F PD ++F +   
Sbjct: 122 VNALSEWLVAEVHRDGKAYRQEYKKGNPQTKLEVVGE-SDHTGTIISFMPDAEVFDEI-E 179

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F    L    +  ++L+  +K  +   +E  EKY      +F++ GGL  Y++   ++R+
Sbjct: 180 FSFDTLEYRLRELSFLNKGIKIIFEDKREGKEKYR-----DFHYTGGLVEYVKFLNKSRT 234

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I  +I       K      VE A+ + +     I S+ N I T EGG+H +G + ALT+
Sbjct: 235 GIHEDIVYI---DKKVDDCLVEIAMQYTDGYTENIYSFANNINTHEGGSHLAGFKAALTK 291

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I +YA+       +  ++  +D+      ++SV + +P+F GQTKTKL +   +  V+ 
Sbjct: 292 TINEYAKRNGALKDKDSNLSGEDIREGLTAVVSVKLPDPQFEGQTKTKLGNTFMRGIVDG 351

Query: 399 ALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
              +    +L +NP  A  +++  +  +      +R +    RK+ +    LPGKLADCS
Sbjct: 352 VTVEELGSFLEENPNTAKVIVDKALRAQRAREAAKRARELTRRKSVLESTSLPGKLADCS 411

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           +     +E+F+VEGDSAGGSAKQ R+R+ QA+LPLRGKILNV  +  +KI  + +I +++
Sbjct: 412 EKDPSKSEIFLVEGDSAGGSAKQGRDRNTQAILPLRGKILNVEKSRLDKILASDEIKNMI 471

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A GC   + +  E  RY K+IIMTDADVDGAHI +LLLTFF++ M  LIE+ +++   P
Sbjct: 472 TAYGCGIGNDFDLEKARYHKIIIMTDADVDGAHIRTLLLTFFFRYMRPLIEEGYVYAAQP 531

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+++T+  K  Y + ++    +L E    G+ K +I R+KGLGEM   QL +T M+   
Sbjct: 532 PLYKVTKQKKEYYVYSDKELDDLLNEI---GRDKYDIQRYKGLGEMNPEQLWDTTMNPET 588

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           RTLL+V I           +  + LMG K   R +FIQE A ++ ++ 
Sbjct: 589 RTLLQVTIED----AAIADEIFSMLMGDKVAPRREFIQENAKYVRNLD 632


>gi|167766860|ref|ZP_02438913.1| hypothetical protein CLOSS21_01377 [Clostridium sp. SS2/1]
 gi|167711408|gb|EDS21987.1| hypothetical protein CLOSS21_01377 [Clostridium sp. SS2/1]
 gi|291558400|emb|CBL37200.1| DNA gyrase, B subunit [butyrate-producing bacterium SSC/2]
          Length = 640

 Score =  637 bits (1643), Expect = e-180,   Method: Composition-based stats.
 Identities = 270/652 (41%), Positives = 385/652 (59%), Gaps = 19/652 (2%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
              +  Y A  I+ILEGLE VR RPGMYIG T EK LHHL  E++DNA+DE +AG+ + I
Sbjct: 3   TQKNGEYGADQIQILEGLEAVRKRPGMYIGSTSEKGLHHLVYEIVDNAVDESLAGFCDTI 62

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V+L+ +G +TV DNGRGIPV  + K    S++E++ T LHAGGKF    Y++SGGLHGV
Sbjct: 63  IVTLNKDGSVTVEDNGRGIPVGINKK-KGVSSVEVVFTILHAGGKFGGGGYKVSGGLHGV 121

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALSD L VTV ++  I  Q++ RG    PL+      +K GT +TF PD  IF 
Sbjct: 122 GSSVVNALSDWLEVTVCKEGHIHKQRYERGKVCYPLKVLGDT-DKTGTTVTFYPDATIFE 180

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               FD   L +  +  A+L+  +K   + D+           E F++ GG+K ++    
Sbjct: 181 TI-DFDYNTLKRRLRETAFLTKNLKIVLTDDR-----GEEQVSETFHYEGGIKEFVTYLN 234

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           + +  +  ++   + EK G +   VE A    +       S+ N I+T EGGTH SG ++
Sbjct: 235 KGKEALYPDVIYCEGEKDGVY---VEVAFQHNDSYNETSLSFVNNIITPEGGTHLSGFKM 291

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALT     YA       ++  ++  +D+      ++S+ I EP+F GQTK KL + +A+ 
Sbjct: 292 ALTSTFNDYARKNNLLKEKEDNLSGEDIREGLTSVISIKIGEPQFEGQTKQKLGNSEARG 351

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            V + L +   ++L QNP  A  + E  +     R   RK R+   RKTA+  + LPGKL
Sbjct: 352 AVNSILSEQLKYFLEQNPQVAKIICEKAVLAQRARDAARKARDLTRRKTALDGMSLPGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS       E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV  A  +K+  N++I
Sbjct: 412 ADCSDKNPENCEIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARLDKVLVNKEI 471

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A G      +  E LRY K+IIMTDADVDGAHIA+LLLTF Y+ M +LI++ +++
Sbjct: 472 QAMITAFGTGIHEDFDIEKLRYHKIIIMTDADVDGAHIATLLLTFIYRFMPELIKKGYVY 531

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           L  PPL+R+ +  K  YA+ +E    IL+E  +    K  I R+KGLGEM A QL +T M
Sbjct: 532 LAQPPLYRVEKNKKFWYAYSDEELNNILQEIGRDNNNK--IQRYKGLGEMDAEQLWDTTM 589

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D  KR LLRV +++D  S  +   +   LMG + + R +FI+  A ++ ++ 
Sbjct: 590 DPEKRILLRVNLDED--SASEIDLTFTTLMGDQVEPRREFIEANAKYVQNLD 639


>gi|145578005|gb|ABP82721.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar bolivia]
          Length = 632

 Score =  637 bits (1643), Expect = e-180,   Method: Composition-based stats.
 Identities = 265/649 (40%), Positives = 383/649 (59%), Gaps = 21/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            ++YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R+  I  QK+ RGIP++ L+      ++ GT   F+PDP+IF +  
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E       K G     VE A+ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIYEEPVYVDGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF+I QG K  YA++E+  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKIQQGKKIQYAYNEKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632


>gi|224024595|ref|ZP_03642961.1| hypothetical protein BACCOPRO_01321 [Bacteroides coprophilus DSM
           18228]
 gi|224017817|gb|EEF75829.1| hypothetical protein BACCOPRO_01321 [Bacteroides coprophilus DSM
           18228]
          Length = 656

 Score =  637 bits (1643), Expect = e-180,   Method: Composition-based stats.
 Identities = 260/662 (39%), Positives = 390/662 (58%), Gaps = 23/662 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
             ++  NY AS+I++LEGLE VR RP MYIG   EK LHHL  EV+DN++DE +AGY   
Sbjct: 6   TPNSGSNYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLVYEVVDNSIDEALAGYCTH 65

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV+++ +  +TV DNGRGIPV+ H K   KS LE+++T LHAGGKFD  +Y++SGGLHG
Sbjct: 66  IEVTINEDNSITVQDNGRGIPVDFHEK-EKKSALEVVMTVLHAGGKFDKGSYKVSGGLHG 124

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKI 215
           VG+S VNALS  +   V R   ++ Q++  G PL P+++         GTR TF PD  I
Sbjct: 125 VGVSCVNALSTHMTTNVFRGGKVYQQEYECGKPLYPVKEVGTCAPGMTGTRQTFWPDGNI 184

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     +  + L    +  AYL+  +    +  + + E+ G  ++E F+   G+K +++ 
Sbjct: 185 FTVT-EYKYSILQARMRELAYLNKGITITLTDKR-VKEEDGSFKQEVFHSEEGVKEFVRF 242

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
                + +  ++    TEK+G     +E AI +       + SY N I T EGGTHE+G 
Sbjct: 243 LNSTNTPLIDDVIYLNTEKQGIP---IECAIMYNTGFRENLHSYVNNINTIEGGTHEAGF 299

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +KKYAE ++   K  + I  +D     + ++SV + EP+F GQTKTKL + + 
Sbjct: 300 RTALTRVLKKYAEESKALEKAKVEISGEDFREGLIAVISVKVAEPQFEGQTKTKLGNNEV 359

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
              V  A+ +   +YL ++P EA  +++ V+  +  R+  RK RE  ++ + +    LPG
Sbjct: 360 SGAVNQAVGEALTYYLEEHPKEAKVIVDKVVLAATARIAARKARESVQRKSPMGGGGLPG 419

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS       ELF+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A   K   + 
Sbjct: 420 KLADCSSRNPEECELFLVEGDSAGGSAKQGRSRQFQAILPLRGKILNVEKAMWHKAFESD 479

Query: 512 QIMDLVQALGCRT-------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           ++ +++QALG R          +   + LRY K+IIMTDADVDG+HI +L++T FY+ M 
Sbjct: 480 EVNNIIQALGIRFGVDGDEDSKKANIDKLRYYKIIIMTDADVDGSHIDTLIMTLFYRYMP 539

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
           ++I+  HL++ +PPL++ ++G  S Y + +E +Q  ++++    +  I   R+KGLGEM 
Sbjct: 540 EVIQGGHLYIATPPLYKCSKGKISEYCYTDEERQAFMQKYGDGSENGIHTQRYKGLGEMN 599

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
             QL ET M+   R L +V I     +  +     + LMG     R +FI++ A++  ++
Sbjct: 600 PEQLWETTMNPETRMLKQVHIE----NAAEADYIFSMLMGDDVAPRREFIEKNATYA-NI 654

Query: 685 GT 686
             
Sbjct: 655 DA 656


>gi|22298189|ref|NP_681436.1| DNA gyrase subunit B [Thermosynechococcus elongatus BP-1]
 gi|22294368|dbj|BAC08198.1| DNA gyrase subunit B [Thermosynechococcus elongatus BP-1]
          Length = 640

 Score =  637 bits (1642), Expect = e-180,   Method: Composition-based stats.
 Identities = 246/651 (37%), Positives = 367/651 (56%), Gaps = 19/651 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y ++ +R+L+GLEPVR RPGMYIG T  K LHHL  EV+DN++DE +AGY + I V 
Sbjct: 2   TAEYSSAQLRVLKGLEPVRTRPGMYIGSTGPKGLHHLVYEVVDNSVDEALAGYCSTILVQ 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +G +TV D+GRGIP + HP     S +E ++T LHAGGKF +  Y++SGGLHGVG+S
Sbjct: 62  INADGSVTVTDDGRGIPTDIHP-DTGVSGVETVMTVLHAGGKFGDGGYKVSGGLHGVGVS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ L VTV R   +  Q++ RG+P +PLEK      +RGT +TF PD +IF +  
Sbjct: 121 VVNALSEWLEVTVWRNGFVHHQRYERGVPTTPLEKTPDTEERRGTSVTFFPDRQIFTETI 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FDA  L+   +  AYL+  ++  +   +        P  E + + GG++ Y++  ++ +
Sbjct: 181 EFDAKVLMTRLRELAYLNAGIRIEFKDLR-----VTPPLSETYCYEGGIREYVRYMVQEK 235

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
             +  EI   + EK    +            +  +  + N I T +GGTH  GL+  LTR
Sbjct: 236 EPLHPEIIYIQGEKDDV-QVEAALQWCADAYSENLLGFANNIRTIDGGTHMEGLKAVLTR 294

Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +          +    ++  +++      I+SV +  PEF GQTKTKL + + +  V+ 
Sbjct: 295 TLNALGRKRNKLKENNANLAGENIREGLTAIISVKVPNPEFEGQTKTKLGNTEVRGIVDA 354

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCS 457
            +      YL  +P     +LE  I+        R+ RE+  RK+ +    LPGKLADCS
Sbjct: 355 IVGAALTEYLDFHPNVTDTILEKAIQAFNAAEAARRAREMVRRKSVLESSTLPGKLADCS 414

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +E+FIVEGDSAGGSAKQ R+R  QA+LPLRGKILN+      KI  N ++  L+
Sbjct: 415 SRDPAVSEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNNEVQSLI 474

Query: 518 QALGCRTRSQYREE-DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
            ALG   + +  +   LRY K+I+MTDADVDG+HI +LLLTFFY+   +L+ Q  +++  
Sbjct: 475 TALGLGVKGEEFDPAKLRYHKIILMTDADVDGSHIRTLLLTFFYRYQQELVNQGFVYIAC 534

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+++ +G +  Y + +   Q+ +  F ++      I RFKGLGEM+  QL ET M+  
Sbjct: 535 PPLYKVERGRQHFYCYSDRELQQQIASFPENAN--YTIQRFKGLGEMMPEQLWETTMNPE 592

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF--IDDVG 685
            R L RVEI        +       LMG +   R +FI+       ++++ 
Sbjct: 593 TRILKRVEIED----AAEADRIFTILMGDRVAPRREFIETYGPQLALENLD 639


>gi|229035151|ref|ZP_04189097.1| DNA gyrase subunit B [Bacillus cereus AH1271]
 gi|228728217|gb|EEL79247.1| DNA gyrase subunit B [Bacillus cereus AH1271]
          Length = 640

 Score =  637 bits (1642), Expect = e-180,   Method: Composition-based stats.
 Identities = 264/654 (40%), Positives = 385/654 (58%), Gaps = 21/654 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
             Q   ++YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY +
Sbjct: 3   QKQMEENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I VS++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLH
Sbjct: 63  EINVSIEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS EL V V R+  I  QK+ RGIP++ L+      ++ GT   F+PDP+I
Sbjct: 122 GVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEI 180

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++ 
Sbjct: 181 FQETIVYEFDTLATRMRELAFLNRNIKLIIEDKREHKQK------KEFHYEGGIKSYVEH 234

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
              ++  I  E    +  K G     VE A+ + E       S+ N I T EGGTHE G 
Sbjct: 235 LNRSKQPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGF 291

Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           + ALTR I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A
Sbjct: 292 KTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           +   E+   + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPG
Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPG 411

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N 
Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++  ++ A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  +
Sbjct: 472 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 531

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPLF++ QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET
Sbjct: 532 IYIAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 589

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639


>gi|222093779|ref|YP_002527826.1| DNA gyrase subunit b [Bacillus cereus Q1]
 gi|221237824|gb|ACM10534.1| DNA gyrase, B subunit [Bacillus cereus Q1]
          Length = 640

 Score =  637 bits (1642), Expect = e-180,   Method: Composition-based stats.
 Identities = 266/654 (40%), Positives = 386/654 (59%), Gaps = 21/654 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
             Q   ++YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY +
Sbjct: 3   QKQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I VS++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLH
Sbjct: 63  EINVSIEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS EL V V R+  I  QK+ RGIP++ L+      ++ GT   F+PDP+I
Sbjct: 122 GVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEI 180

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++ 
Sbjct: 181 FQETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 234

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
              ++  I  E    +  K G     VE ++ + E       S+ N I T EGGTHE G 
Sbjct: 235 LNRSKQPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGF 291

Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           + ALTR I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A
Sbjct: 292 KTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           +   E+   + F+ +L++NP  A K++E   +        ++ +    RK+A+    LPG
Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPG 411

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N 
Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++  ++ A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  +
Sbjct: 472 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGY 531

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPLF+I QG K  YA++E+  +KIL+E     K    I R+KGLGEM  +QL ET
Sbjct: 532 IYIAQPPLFKIQQGKKIQYAYNEKELEKILDELPAQPKPG--IQRYKGLGEMNPAQLWET 589

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639


>gi|229199683|ref|ZP_04326326.1| DNA gyrase subunit B [Bacillus cereus m1293]
 gi|228583778|gb|EEK41953.1| DNA gyrase subunit B [Bacillus cereus m1293]
          Length = 640

 Score =  636 bits (1641), Expect = e-180,   Method: Composition-based stats.
 Identities = 266/654 (40%), Positives = 385/654 (58%), Gaps = 21/654 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
             Q   ++YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY +
Sbjct: 3   QKQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I VS++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLH
Sbjct: 63  EINVSIEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS EL V V R+  I  QK+ RGIP++ L+      ++ GT   F+PDP+I
Sbjct: 122 GVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEI 180

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++ 
Sbjct: 181 FQETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 234

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
              ++  I  E    +  K G     VE ++ + E       S+ N I T EGGTHE G 
Sbjct: 235 LNRSKQPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGF 291

Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           + ALTR I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A
Sbjct: 292 KTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           +   E+   + F+ +L++NP  A K++E   +        ++ +    RK+A+    LPG
Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPG 411

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N 
Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++  ++ A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  +
Sbjct: 472 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGY 531

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPLF+I QG K  YA++E+  +KIL E     K    I R+KGLGEM  +QL ET
Sbjct: 532 IYIAQPPLFKIQQGKKIQYAYNEKELEKILAELPAQPKPG--IQRYKGLGEMNPAQLWET 589

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639


>gi|307946858|ref|ZP_07662193.1| DNA topoisomerase IV, B subunit [Roseibium sp. TrichSKD4]
 gi|307770522|gb|EFO29748.1| DNA topoisomerase IV, B subunit [Roseibium sp. TrichSKD4]
          Length = 682

 Score =  636 bits (1641), Expect = e-180,   Method: Composition-based stats.
 Identities = 407/686 (59%), Positives = 518/686 (75%), Gaps = 6/686 (0%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           M+    DLF+     S+ +  K K   +    P     + + +Y A+ I +LEGLEPVR 
Sbjct: 1   MS-AKDDLFAGNTALSEKAKAKPKPEKKAQARPQPVAPAEAGDYSAADIEVLEGLEPVRR 59

Query: 61  RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+A  I+V+L  +G+LT+VDNGRGIPV+ 
Sbjct: 60  RPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHATWIDVTLGADGYLTIVDNGRGIPVDP 119

Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
           HPKF +KS LE+I+TTLHAGGKFD+  YE SGGLHGVG+SVVNALS++L V VAR   ++
Sbjct: 120 HPKFVDKSALEVIMTTLHAGGKFDSKVYETSGGLHGVGVSVVNALSEDLVVEVARTRKLY 179

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
            Q+F RG P++PLE      N+RGT + F+PDP+IFG  AGF   RLLKM +SKAYL G 
Sbjct: 180 RQQFQRGRPVAPLELVGDTHNRRGTSVRFKPDPEIFGKSAGFKPERLLKMARSKAYLFGG 239

Query: 241 VKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
           V+  W C+   I EK   P +  F+FPGGLK +L  +LE    +  +IF G+T+K G+H 
Sbjct: 240 VEIRWHCEPALIKEKDETPTEAVFHFPGGLKDFLAERLEKERRVVDDIFAGRTDKAGSH- 298

Query: 300 GTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359
           G+VEWA++W   +  + SYCNT+ T EGGTHE+GLR AL RG+K Y ELT NK+A  I  
Sbjct: 299 GSVEWAVSWFAGDGFVNSYCNTVPTPEGGTHETGLRYALMRGLKAYGELTNNKKAAIITG 358

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD++ SA G+LSVFIREPEF GQTK KL + +A R  ENA+RD FDH+L  +P +A KLL
Sbjct: 359 DDILTSAGGMLSVFIREPEFVGQTKDKLATNEATRITENAVRDAFDHWLTASPNQANKLL 418

Query: 420 EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           EWVI+R+E+RLRRRK+++V RKTA+RKLRLPGKLADCS N + GTELFIVEGDSAGGSAK
Sbjct: 419 EWVIDRAEDRLRRRKEKDVARKTAVRKLRLPGKLADCSANQSDGTELFIVEGDSAGGSAK 478

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
           QARNRSNQAVLPLRGKILNVA+AG +K+  NQQ+ DL+QALGC TRS YR++DLRYEK+I
Sbjct: 479 QARNRSNQAVLPLRGKILNVANAGRDKLAANQQLADLIQALGCGTRSSYRDDDLRYEKII 538

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599
           +MTDADVDGAHIASLL+TFF++EM ++I   HL+L  PPL+R+TQG K++YA D+ HK +
Sbjct: 539 VMTDADVDGAHIASLLITFFFREMPEMIHNGHLYLAVPPLYRLTQGGKTLYARDDTHKDE 598

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
           +L +  K GKGKI+I RFKGLGEML +QLKET MD  +RTLL+V +       K+T  ++
Sbjct: 599 LLAKAFK-GKGKIDIGRFKGLGEMLPAQLKETTMDPTRRTLLKVGVESGFE--KETGTTV 655

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
           ++LMG K + RF+FIQE A F +D+ 
Sbjct: 656 DRLMGNKPEARFRFIQENAEFAEDLD 681


>gi|134297887|ref|YP_001111383.1| DNA gyrase subunit B [Desulfotomaculum reducens MI-1]
 gi|134050587|gb|ABO48558.1| DNA gyrase subunit B [Desulfotomaculum reducens MI-1]
          Length = 638

 Score =  636 bits (1641), Expect = e-180,   Method: Composition-based stats.
 Identities = 264/655 (40%), Positives = 388/655 (59%), Gaps = 22/655 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              Q  ++ Y A  I++LEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AGY 
Sbjct: 1   MDQQQQNNKYSADQIQVLEGLEAVRRRPGMYIGSTSARGLHHLVYEVVDNSIDEALAGYC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I V++  +  +TV DNGRGIPV+ HPK   +  +E++LT LHAGGKF    Y++SGGL
Sbjct: 61  DKIIVTIQEDNSITVEDNGRGIPVDLHPKV-GRPAVEVVLTMLHAGGKFGGGGYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS  L V + R   I+ Q++SRGIP + L+     +   GT++TF+PD +
Sbjct: 120 HGVGVSVVNALSKYLSVEIKRNGKIYKQEYSRGIPTTELQIVGNSK-TTGTKVTFKPDEE 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   F    L +  +  AYL+  +K      ++      I     F + GG+K +++
Sbjct: 179 IFEELV-FSLETLSQRIRELAYLNKGIKIILQDKRKDPVAEQI-----FQYDGGIKDFVK 232

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               N+  I ++      EK+   +  VE AI + +     + SY N I T +GGTHE G
Sbjct: 233 HLNRNKQTIHTKPIYVSGEKE---QIVVEVAIQYNDGYTENMLSYANNIHTVDGGTHEVG 289

Query: 334 LRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           L+ ALTR I  Y       +    ++  +D+   A  ++SV + EP+F GQTKTKL + +
Sbjct: 290 LKTALTRVINDYGRQHGVLKNNDANLSGEDIREGATIVISVKVPEPQFEGQTKTKLGNSE 349

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  V++   +    YLV+NP  A K++E  I  +  R   RK RE   RK+A+  + LP
Sbjct: 350 VRGIVDSIFAEKLSTYLVENPSVAKKIIEKGITAARAREAARKARELTRRKSALETMSLP 409

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS+     +E+++VEGDSAGGSAKQ R R  QA+LPL+GKILNV  A  +KI  N
Sbjct: 410 GKLADCSEKDPSVSEIYLVEGDSAGGSAKQGRERRFQAILPLKGKILNVEKARMDKILAN 469

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++ A+G      +     RY K++IMTDADVDGAHI +LL+TFFY+ M  LIE  
Sbjct: 470 EEIRAMITAMGTGIGEDFDIAKARYHKIVIMTDADVDGAHIRTLLMTFFYRYMRQLIEAG 529

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++F+  PPL+R+ +G    Y + +   +++L      G  ++ I R+KGLGEM   QL E
Sbjct: 530 YVFVAQPPLYRVRKGKHDSYCYSDNELEELLNRI---GHDRVNIQRYKGLGEMNPEQLWE 586

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T MD + RT+L+V +   +    +   + + LMG + + R  FIQE A ++ ++ 
Sbjct: 587 TTMDPDTRTMLQVTLEDAI----EADATFSMLMGDRVEPRRDFIQENAKYVRNLD 637


>gi|13878524|sp|O29720|GYRB_ARCFU RecName: Full=DNA gyrase subunit B
          Length = 632

 Score =  636 bits (1641), Expect = e-180,   Method: Composition-based stats.
 Identities = 258/656 (39%), Positives = 368/656 (56%), Gaps = 30/656 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            +    +  Y A  I +L+ LE VR RPGMYIGG   + LHHL  EV+DNA+DE +AGY 
Sbjct: 1   MSPDQTAVEYTAKDIEVLDDLEAVRKRPGMYIGGVGVRGLHHLLWEVVDNAVDEALAGYC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I+VSL  +G  +V DNGRGIP E H     KS LEI++T LHAGGKF    Y +SGGL
Sbjct: 61  DTIKVSLHKDGSASVEDNGRGIPTEMHE--LGKSALEIVMTKLHAGGKFSKKVYRVSGGL 118

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRG----IPLSPLEKKEKVRNKRGTRITFR 210
           HGVG+SVVNALS+ L V V R   I+ QK+ RG          E   + +   GT + F+
Sbjct: 119 HGVGVSVVNALSEWLEVWVKRNGKIYYQKYQRGSRSPEAGHRTEVLGETKEH-GTTVRFK 177

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PD +IF     F    + +  +  AYL+  +K     ++E  E       E F+F  G+ 
Sbjct: 178 PDREIFETT-EFKYEIVAQRLKELAYLNRGLKIILFDEREGKE-------ETFHFEDGII 229

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
             +++   NR  +   I   +T K G    +VE AI + + +   I ++ N I T EGG+
Sbjct: 230 GLVRSLNRNRKPLHEPI-YIETTKDGV---SVEVAIQFTDSDVENIQAFANNINTSEGGS 285

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           H  G R  LTR + +Y +    K+   +   D+      ++SV + EP+F GQTKTKL +
Sbjct: 286 HVVGFRAGLTRAVNEYGK-KHLKKFEPVTGVDIREGLTAVISVKVPEPQFEGQTKTKLTN 344

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
            D +  VE+A+      +L +NP +A  LL   I   + R   ++ +E+ ++       L
Sbjct: 345 SDVKTVVESAVYSGVLRWLEENPAQAETLLNKFILNKKAREAAKRAKELVKRKNELITTL 404

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADCS       ELFIVEG+SAGGSAKQAR+R  QA+LP++GKI+NV  AG  ++  
Sbjct: 405 PGKLADCSSKNPEERELFIVEGESAGGSAKQARDRRFQAILPIKGKIINVEKAGMARVLK 464

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N +I  ++ A+G      +     RY ++IIMTDADVDGAHI +LLLTFFY+ M  LIE 
Sbjct: 465 NDEIKAIISAIGAGIGKDFDITKARYRRIIIMTDADVDGAHIRTLLLTFFYRYMRPLIES 524

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
            +L++  PPL++I +G KS YA+ +E  ++ LE+      G  E+ R+KGLGEM   QL 
Sbjct: 525 GYLYIAQPPLYQIKKGKKSYYAYSDEELKRTLEQV-----GGGEVQRYKGLGEMNPQQLW 579

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           ET M+   R L++V +       K   +  + LMG   + R  FI   +  + ++ 
Sbjct: 580 ETTMNPENRILIQVTLED----AKRADELFSILMGEDVESRRNFIMAHSKEVKNLD 631


>gi|159184842|ref|NP_354616.2| DNA topoisomerase IV subunit B [Agrobacterium tumefaciens str. C58]
 gi|159140126|gb|AAK87401.2| DNA gyrase subunit B [Agrobacterium tumefaciens str. C58]
          Length = 710

 Score =  636 bits (1641), Expect = e-180,   Method: Composition-based stats.
 Identities = 450/714 (63%), Positives = 535/714 (74%), Gaps = 34/714 (4%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSA-------------------- 40
           M DDS DLFS LP      +E  + + +   +PA A  +                     
Sbjct: 1   MMDDSNDLFSGLPAAQNSDTETNEDTVKPVKAPATAAANVPANRNVQPKPAAIAAIPTSA 60

Query: 41  --------SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
                   SD+Y ASSIR+LEGLEPVRMRPGMYIGGTDEKALHHLF+EVIDN+MDE +AG
Sbjct: 61  PPAPVSPSSDDYGASSIRVLEGLEPVRMRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAG 120

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           +AN IEV LD  GFLTV DNGRGIPVENHP+ P KSTLE+I+T LHAGGKFD   YE SG
Sbjct: 121 HANFIEVHLDAEGFLTVTDNGRGIPVENHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSG 180

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALSD L V VAR   ++ Q+FSRG P+  LE+   V N+RGTR+ F PD
Sbjct: 181 GLHGVGVSVVNALSDLLEVEVARNRKLYRQRFSRGAPIGGLEELGDVHNRRGTRVRFHPD 240

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI-PEKEEFYFPGGLKT 271
           P+IFGD A F+ AR+ +M +SKAYL G V+  WSCD  +    G  PEK  F+FPGGLK 
Sbjct: 241 PQIFGDHAKFEPARIFRMARSKAYLFGGVEIRWSCDPGMVPADGEIPEKAVFHFPGGLKD 300

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHE 331
           YL   L     ++ EIF+G+TEK G H G +EWA+ W   + +I SYCNTI T EGGTHE
Sbjct: 301 YLAATLGKEFTVTREIFSGRTEKTGGH-GALEWAVTWYGGDTQIHSYCNTIPTPEGGTHE 359

Query: 332 SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           +G R+ALT+G+K YAELTQNKRA  I +DD+MISA G+LSVFIREPEF GQTK KL +++
Sbjct: 360 AGFRIALTKGLKNYAELTQNKRAREITTDDVMISAAGMLSVFIREPEFVGQTKDKLATVE 419

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           AQR VENALRDPFDHYL  NP EA KLL+WVIER+EERLRRRK++EVNRKTA+RKLRLPG
Sbjct: 420 AQRIVENALRDPFDHYLTGNPGEAAKLLDWVIERAEERLRRRKEKEVNRKTAVRKLRLPG 479

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCSQN A   ELFIVEGDSAGGSAKQARNR+NQA+LPLRGKILNV SA  EK+  NQ
Sbjct: 480 KLADCSQNTAENAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVGSASREKLSANQ 539

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           QI DL+QALGC TR++YREEDLRYE++IIMTDADVDGAHIASLL+TFFYQEM +LI   H
Sbjct: 540 QIADLIQALGCGTRTKYREEDLRYERIIIMTDADVDGAHIASLLITFFYQEMPELIRGNH 599

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           L+L  PPL+ I QG KS YA D+ H+ +++E   K    K+EI RFKGLGEM+A+QLKET
Sbjct: 600 LYLAVPPLYVIRQGAKSAYARDDAHRAELMETVFK--GKKVEIGRFKGLGEMMAAQLKET 657

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD  KRTLLRVEI+      + T+++++ LMGTKAD RF+FIQERA+F D++ 
Sbjct: 658 TMDPEKRTLLRVEIDDV--DFEGTREAVDNLMGTKADARFRFIQERAAFADNLD 709


>gi|228994212|ref|ZP_04154112.1| DNA gyrase subunit B [Bacillus pseudomycoides DSM 12442]
 gi|228765664|gb|EEM14318.1| DNA gyrase subunit B [Bacillus pseudomycoides DSM 12442]
          Length = 640

 Score =  636 bits (1640), Expect = e-180,   Method: Composition-based stats.
 Identities = 265/654 (40%), Positives = 385/654 (58%), Gaps = 21/654 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
             Q   ++YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY +
Sbjct: 3   QKQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I VS++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLH
Sbjct: 63  EINVSIEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS EL V V R+  I  QK+ RGIP + L+   +  +  GT   F+PDP+I
Sbjct: 122 GVGASVVNALSTELEVFVHREGKIHYQKYERGIPAADLKVIGET-DHTGTITRFKPDPEI 180

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   +D   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++ 
Sbjct: 181 FKETTEYDFDTLATRMRELAFLNRNIKLIIEDKRENKQK------KEFHYEGGIKSYVEH 234

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
              ++  I  E    +  K G     VE ++ + E       S+ N I T EGGTHE G 
Sbjct: 235 LNRSKQPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGF 291

Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           + ALTR I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A
Sbjct: 292 KTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           +   E+   + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPG
Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPG 411

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N 
Sbjct: 412 KLADCSSKDPSISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++  ++ A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  +
Sbjct: 472 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGY 531

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPLF++ QG K  YA++++  +KIL E   H K    I R+KGLGEM  +QL ET
Sbjct: 532 IYIAQPPLFKVQQGKKIQYAYNDKELEKILAELPAHPKPG--IQRYKGLGEMNPTQLWET 589

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639


>gi|73670270|ref|YP_306285.1| DNA gyrase subunit B [Methanosarcina barkeri str. Fusaro]
 gi|72397432|gb|AAZ71705.1| DNA gyrase subunit B [Methanosarcina barkeri str. Fusaro]
          Length = 633

 Score =  636 bits (1640), Expect = e-180,   Method: Composition-based stats.
 Identities = 256/644 (39%), Positives = 372/644 (57%), Gaps = 20/644 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YDAS I++LEGLE VR RP MYIG TD + LHHL  EV+DN++DE +AG+  +I V+++ 
Sbjct: 7   YDASHIQVLEGLEAVRKRPSMYIGSTDSRGLHHLVYEVVDNSIDEALAGFCTIINVTINP 66

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G +TV+DNGRGIPV+ HP F  KS LE+++T LHAGGKFD +TY++SGGLHGVG+SVVN
Sbjct: 67  DGSVTVLDNGRGIPVDPHP-FHKKSALEVVMTVLHAGGKFDKNTYKVSGGLHGVGVSVVN 125

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
            LS+ L V VAR+   + Q++ RG P + + +         T+ TF+PD KIF     FD
Sbjct: 126 GLSEWLEVEVAREGKKYFQRYDRGKPKADVLEIGTSETTG-TKTTFKPDEKIFETL-DFD 183

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L    +  A+L+  +       +         + E F + GG+  +++     +  +
Sbjct: 184 YEILSNRLRELAFLNRGLTISLMDLRTPD-----GQAETFTYEGGIVEFVKYLNNKKQPL 238

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIK 343
            + I+  +          +++  ++ E    + S+ N I T EGGTH  G + ALTR   
Sbjct: 239 HAPIYFERQRDDMVVEIAMQYTSSYAEN---VYSFANNINTHEGGTHIIGFKTALTRVAN 295

Query: 344 KYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRD 402
            Y +  +  K  I +  DD+      I+SV + EP+F GQTKT+L + D +  V++ + D
Sbjct: 296 DYIKANKLSKEDIKLTGDDVREGLTAIISVKLMEPQFEGQTKTRLGNSDVKGIVDSLVTD 355

Query: 403 PFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIA 461
               Y  +NP  A  +LE  +   + R   +K RE   RK A+    LPGKLADCS+   
Sbjct: 356 GLAEYFEENPKVANVILEKALLAQKAREAAKKARELTRRKNALEVSTLPGKLADCSEKNP 415

Query: 462 HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
              E++IVEG+SAGGSAKQ R+RS QA+LPLRGKILNV  +   KI  N++I+ L+ A+G
Sbjct: 416 AACEIYIVEGNSAGGSAKQGRDRSFQAILPLRGKILNVEKSRLAKILKNEEIISLITAIG 475

Query: 522 CRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581
                 +  E  RY KVIIMTDADVDG HI +LLLT F++ M  LI++ ++++  PPL+R
Sbjct: 476 TGISEDFTLESARYHKVIIMTDADVDGEHIRTLLLTLFFRYMRPLIDEGYVYIAQPPLYR 535

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G    Y H +   +   +E  + G G   I R+KGLGEM   QL ET M+   R LL
Sbjct: 536 IKKGKAEYYIHSDRELEAKKKELGEKGLG---IQRYKGLGEMNPGQLWETTMNPESRILL 592

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V +   +       +    LMG + + R  FI+  A  + ++ 
Sbjct: 593 QVTLEDAIR----ADEIFRVLMGDEVEPRRNFIEAHAKEVVNLD 632


>gi|34541335|ref|NP_905814.1| DNA gyrase subunit B [Porphyromonas gingivalis W83]
 gi|188994277|ref|YP_001928529.1| DNA gyrase B subunit [Porphyromonas gingivalis ATCC 33277]
 gi|34397651|gb|AAQ66713.1| DNA gyrase, B subunit [Porphyromonas gingivalis W83]
 gi|188593957|dbj|BAG32932.1| DNA gyrase B subunit [Porphyromonas gingivalis ATCC 33277]
          Length = 654

 Score =  636 bits (1640), Expect = e-180,   Method: Composition-based stats.
 Identities = 261/660 (39%), Positives = 385/660 (58%), Gaps = 20/660 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
              +++  Y AS+I++LEGLE VR RP MYIG   EK LHHL  EV+DN++DE +AGY +
Sbjct: 6   KKNTSASEYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLVYEVVDNSIDEALAGYCD 65

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            +EV ++ +  +TV DNGRGIPV+ H K   KS LE++LT LHAGGKFD  +Y++SGGLH
Sbjct: 66  NVEVIIEEDNSITVRDNGRGIPVDYHEK-EGKSALEVVLTVLHAGGKFDKGSYKVSGGLH 124

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+S VNALS  L   V R   I  Q+FS G PL  +E       + GT I F+PD  I
Sbjct: 125 GVGVSCVNALSTYLRAEVYRNGKIHMQEFSCGKPLHDVEVIGST-ERTGTTIQFKPDSSI 183

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     +  + L K  +  +YL+  +    +  + + E     +++ F    GLK +++ 
Sbjct: 184 FSVT-EYQYSILAKRLRELSYLNAGITLTLTDKRTLKEDGSGYKQDVFRSEEGLKEFVRH 242

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
               +  +   +    TEK+G     VE A+ +       + SY N I T EGGTH +G 
Sbjct: 243 LDRMKEPLVDNVIHIVTEKQGIP---VEVAMTYNTSYLENVYSYVNDINTIEGGTHLAGF 299

Query: 335 RVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R  LTR +KKYA  ++   K  + I  DD       ++S+ + EP+F GQTKTKL + + 
Sbjct: 300 RRGLTRTLKKYATDSKLLDKVKVEITGDDFREGLTAVISIKVAEPQFEGQTKTKLGNNEV 359

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
              V+ A+ +  ++YL ++P EA  +++ V+  +  R   RK RE+ ++ + +    LPG
Sbjct: 360 TGAVDMAVSEALEYYLEEHPKEAKLIVDKVVLAATARQAARKAREMVQRKSPLSGGGLPG 419

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS       ELF+VEGDSAGG+AKQ R+R  QA+LPLRGKILNV  A   K+  ++
Sbjct: 420 KLADCSSKDPEQCELFLVEGDSAGGTAKQGRDREFQAILPLRGKILNVEKAMQHKVFESE 479

Query: 512 QIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           +I ++  ALG    ++   +      LRY KV+IMTDADVDG+HIA+L+LTFF++ M  L
Sbjct: 480 EIRNIYTALGVTIGTEEDSKALNLSKLRYHKVVIMTDADVDGSHIATLILTFFFRNMRTL 539

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           IE  ++F+ +PPL+   +G +  Y   E+ +Q  ++ +    + ++ + R+KGLGEM   
Sbjct: 540 IENGYVFIATPPLYLCKKGKEQEYCWTEQQRQAFVDRYADGNESRVHVQRYKGLGEMNEE 599

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           QL ET MD  KRTL +V I     +  +     + LMG +   R +FI+E A++   +  
Sbjct: 600 QLWETTMDPEKRTLRKVTIE----NAAEADAIFSMLMGDEVGPRREFIEENATYAR-IDA 654


>gi|225862062|ref|YP_002747440.1| DNA gyrase, B subunit [Bacillus cereus 03BB102]
 gi|225788933|gb|ACO29150.1| DNA gyrase, B subunit [Bacillus cereus 03BB102]
          Length = 640

 Score =  636 bits (1640), Expect = e-180,   Method: Composition-based stats.
 Identities = 265/654 (40%), Positives = 385/654 (58%), Gaps = 21/654 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
             Q   ++YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY +
Sbjct: 3   QKQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I VS++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLH
Sbjct: 63  EINVSIEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS EL V V R+  I  QK+ RGIP++ L+      ++ GT   F+PDP+I
Sbjct: 122 GVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEI 180

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++ 
Sbjct: 181 FQETIVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 234

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
              ++  I  E    +  K G     VE ++ + E       S+ N I T EGGTHE G 
Sbjct: 235 LNRSKQPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGF 291

Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           + ALTR I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A
Sbjct: 292 KTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           +   E+   + F+ +L++NP  A K++E   +        ++ +    RK+A+    LPG
Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPG 411

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N 
Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++  ++ A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  +
Sbjct: 472 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGY 531

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPLF++ QG K  YA++E+  +KIL E     K    I R+KGLGEM  +QL ET
Sbjct: 532 IYIAQPPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 589

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639


>gi|284047394|ref|YP_003397733.1| DNA gyrase, B subunit [Acidaminococcus fermentans DSM 20731]
 gi|283951615|gb|ADB46418.1| DNA gyrase, B subunit [Acidaminococcus fermentans DSM 20731]
          Length = 646

 Score =  636 bits (1640), Expect = e-180,   Method: Composition-based stats.
 Identities = 261/648 (40%), Positives = 383/648 (59%), Gaps = 24/648 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y A  I++LEGLE VR RP MYIG    + LHHL  EVIDN++DE +AGY + I V + 
Sbjct: 17  DYGAEQIQVLEGLEAVRKRPSMYIGSISGRGLHHLVYEVIDNSIDEALAGYCDHIRVIIH 76

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV DNGRGIPVE H     K  +E+++T LHAGGKF +  Y++SGGLHGVG+S V
Sbjct: 77  PDNSITVTDNGRGIPVEMHK--VGKPAIEVVMTVLHAGGKFGDGGYKVSGGLHGVGVSCV 134

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221
           NALS ++ V V +   I+  +FS+G    PL  K +   N+ GT +TF PD  IF +   
Sbjct: 135 NALSKKMVVEVKKNGKIYGIEFSKGKTTRPLYVKGECPENETGTSVTFWPDDTIFTETV- 193

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +    L    +  A+L+  VK   + ++         + E F++ GG+ ++++   + + 
Sbjct: 194 YSYDTLKHRIRELAFLNKGVKIQLTDERS-------GQDEVFHYEGGIVSFVEFVNKGKE 246

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            + ++    + E++ T    VE A+ + +     I ++ N I T+EGGTH +GL+ ALTR
Sbjct: 247 PLHAKPIYVEGERQDTI---VEVAMQYTDAYTENIYTFVNNINTEEGGTHLAGLKQALTR 303

Query: 341 GIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  YA      +    ++  DD+      ++S+ +REP+F GQTKTKL + + +  V+N
Sbjct: 304 CINDYARKNSLLKDNEDNLSGDDVREGLTCVMSLKVREPQFEGQTKTKLGNSEVRGIVDN 363

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            + +    Y  +N   A K++E  I  S  R   RK R+   RK+A+    LPGKLADCS
Sbjct: 364 MVTEALTEYFEENAPVAKKIVEKAIMASRARSAARKARDLTRRKSALEVSSLPGKLADCS 423

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
              A  TE+++VEGDSAGGSAKQ R+R+ QA+LPLRGKILNV  A  +K+ N+Q+I  ++
Sbjct: 424 SKNAAETEIYLVEGDSAGGSAKQGRDRNFQAILPLRGKILNVEKARLDKMLNSQEIRAMI 483

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A GC    ++     RY K+IIMTDADVDGAHI +LLLTFFY+ M  LI+  ++F+  P
Sbjct: 484 TAFGCGIGDEFDIAKARYGKIIIMTDADVDGAHIRTLLLTFFYRYMKPLIQNGNVFIAQP 543

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+ I  G K  YA+ +E  Q+ L+E  +       + R+KGLGEM   QL ET MD +K
Sbjct: 544 PLYLIRTGKKHTYAYSDEELQRKLDEVGRQNNPY--VQRYKGLGEMNPEQLWETTMDPSK 601

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           RT+L+V++              + LMG K + R +FI+E A  + ++ 
Sbjct: 602 RTVLQVQLED----AATADSVFSVLMGDKVEPRRQFIEENAGKVTNLD 645


>gi|145577961|gb|ABP82699.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar finitimus]
 gi|145578027|gb|ABP82732.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar poloniensis]
          Length = 632

 Score =  636 bits (1640), Expect = e-180,   Method: Composition-based stats.
 Identities = 265/649 (40%), Positives = 384/649 (59%), Gaps = 21/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            ++YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R+  I  QK+ RGIP++ L+      ++ GT   F+PDP+IF +  
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E    +  K G     VE ++ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K++E   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF+I QG K  YA++E+  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKIQQGKKIQYAYNEKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632


>gi|118475783|ref|YP_892934.1| DNA gyrase subunit B [Bacillus thuringiensis str. Al Hakam]
 gi|118415008|gb|ABK83427.1| DNA gyrase subunit B [Bacillus thuringiensis str. Al Hakam]
          Length = 645

 Score =  636 bits (1640), Expect = e-180,   Method: Composition-based stats.
 Identities = 265/654 (40%), Positives = 385/654 (58%), Gaps = 21/654 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
             Q   ++YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY +
Sbjct: 8   QKQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 67

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I VS++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLH
Sbjct: 68  EINVSIEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 126

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS EL V V R+  I  QK+ RGIP++ L+      ++ GT   F+PDP+I
Sbjct: 127 GVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEI 185

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++ 
Sbjct: 186 FQETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 239

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
              ++  I  E    +  K G     VE ++ + E       S+ N I T EGGTHE G 
Sbjct: 240 LNRSKQPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGF 296

Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           + ALTR I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A
Sbjct: 297 KTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 356

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           +   E+   + F+ +L++NP  A K++E   +        ++ +    RK+A+    LPG
Sbjct: 357 RTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPG 416

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N 
Sbjct: 417 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 476

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++  ++ A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  +
Sbjct: 477 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGY 536

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPLF++ QG K  YA++E+  +KIL E     K    I R+KGLGEM  +QL ET
Sbjct: 537 IYIAQPPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 594

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 595 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 644


>gi|30260200|ref|NP_842577.1| DNA gyrase subunit B [Bacillus anthracis str. Ames]
 gi|47525259|ref|YP_016608.1| DNA gyrase subunit B [Bacillus anthracis str. 'Ames Ancestor']
 gi|49183044|ref|YP_026296.1| DNA gyrase subunit B [Bacillus anthracis str. Sterne]
 gi|49476686|ref|YP_034365.1| DNA gyrase subunit B [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|65317473|ref|ZP_00390432.1| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), B subunit [Bacillus anthracis str. A2012]
 gi|165873014|ref|ZP_02217635.1| DNA gyrase, B subunit [Bacillus anthracis str. A0488]
 gi|167635023|ref|ZP_02393340.1| DNA gyrase, B subunit [Bacillus anthracis str. A0442]
 gi|167641730|ref|ZP_02399973.1| DNA gyrase, B subunit [Bacillus anthracis str. A0193]
 gi|170689461|ref|ZP_02880651.1| DNA gyrase, B subunit [Bacillus anthracis str. A0465]
 gi|170707498|ref|ZP_02897951.1| DNA gyrase, B subunit [Bacillus anthracis str. A0389]
 gi|177655278|ref|ZP_02936832.1| DNA gyrase, B subunit [Bacillus anthracis str. A0174]
 gi|190569295|ref|ZP_03022189.1| DNA gyrase, B subunit [Bacillus anthracis Tsiankovskii-I]
 gi|196036134|ref|ZP_03103534.1| DNA gyrase, B subunit [Bacillus cereus W]
 gi|196041949|ref|ZP_03109236.1| DNA gyrase, B subunit [Bacillus cereus NVH0597-99]
 gi|196045551|ref|ZP_03112782.1| DNA gyrase, B subunit [Bacillus cereus 03BB108]
 gi|206975909|ref|ZP_03236820.1| DNA gyrase, B subunit [Bacillus cereus H3081.97]
 gi|217957586|ref|YP_002336128.1| DNA gyrase subunit B [Bacillus cereus AH187]
 gi|218901211|ref|YP_002449045.1| DNA gyrase, B subunit [Bacillus cereus AH820]
 gi|227812683|ref|YP_002812692.1| DNA gyrase, B subunit [Bacillus anthracis str. CDC 684]
 gi|228918105|ref|ZP_04081633.1| DNA gyrase subunit B [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228930499|ref|ZP_04093499.1| DNA gyrase subunit B [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931511|ref|ZP_04094421.1| DNA gyrase subunit B [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228949215|ref|ZP_04111483.1| DNA gyrase subunit B [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228988722|ref|ZP_04148807.1| DNA gyrase subunit B [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|229124996|ref|ZP_04254170.1| DNA gyrase subunit B [Bacillus cereus 95/8201]
 gi|229142242|ref|ZP_04270766.1| DNA gyrase subunit B [Bacillus cereus BDRD-ST26]
 gi|229187722|ref|ZP_04314858.1| DNA gyrase subunit B [Bacillus cereus BGSC 6E1]
 gi|229603398|ref|YP_002864662.1| DNA gyrase, B subunit [Bacillus anthracis str. A0248]
 gi|254687066|ref|ZP_05150924.1| DNA gyrase subunit B [Bacillus anthracis str. CNEVA-9066]
 gi|254724151|ref|ZP_05185936.1| DNA gyrase subunit B [Bacillus anthracis str. A1055]
 gi|254742123|ref|ZP_05199810.1| DNA gyrase subunit B [Bacillus anthracis str. Kruger B]
 gi|254755967|ref|ZP_05207999.1| DNA gyrase subunit B [Bacillus anthracis str. Vollum]
 gi|254761353|ref|ZP_05213375.1| DNA gyrase subunit B [Bacillus anthracis str. Australia 94]
 gi|49066055|sp|Q9X3Y6|GYRB_BACAN RecName: Full=DNA gyrase subunit B
 gi|30253521|gb|AAP24063.1| DNA gyrase, B subunit [Bacillus anthracis str. Ames]
 gi|47500407|gb|AAT29083.1| DNA gyrase, B subunit [Bacillus anthracis str. 'Ames Ancestor']
 gi|49176971|gb|AAT52347.1| DNA gyrase, B subunit [Bacillus anthracis str. Sterne]
 gi|49328242|gb|AAT58888.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit B)
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|51988026|dbj|BAD44714.1| gyraseB [Bacillus anthracis]
 gi|164711226|gb|EDR16782.1| DNA gyrase, B subunit [Bacillus anthracis str. A0488]
 gi|167510284|gb|EDR85687.1| DNA gyrase, B subunit [Bacillus anthracis str. A0193]
 gi|167529497|gb|EDR92247.1| DNA gyrase, B subunit [Bacillus anthracis str. A0442]
 gi|170127494|gb|EDS96368.1| DNA gyrase, B subunit [Bacillus anthracis str. A0389]
 gi|170666563|gb|EDT17336.1| DNA gyrase, B subunit [Bacillus anthracis str. A0465]
 gi|172080205|gb|EDT65297.1| DNA gyrase, B subunit [Bacillus anthracis str. A0174]
 gi|190559602|gb|EDV13593.1| DNA gyrase, B subunit [Bacillus anthracis Tsiankovskii-I]
 gi|195991301|gb|EDX55269.1| DNA gyrase, B subunit [Bacillus cereus W]
 gi|196023758|gb|EDX62434.1| DNA gyrase, B subunit [Bacillus cereus 03BB108]
 gi|196027204|gb|EDX65824.1| DNA gyrase, B subunit [Bacillus cereus NVH0597-99]
 gi|206746003|gb|EDZ57399.1| DNA gyrase, B subunit [Bacillus cereus H3081.97]
 gi|217063046|gb|ACJ77296.1| DNA gyrase, B subunit [Bacillus cereus AH187]
 gi|218537455|gb|ACK89853.1| DNA gyrase, B subunit [Bacillus cereus AH820]
 gi|227004428|gb|ACP14171.1| DNA gyrase, B subunit [Bacillus anthracis str. CDC 684]
 gi|228595790|gb|EEK53474.1| DNA gyrase subunit B [Bacillus cereus BGSC 6E1]
 gi|228641260|gb|EEK97567.1| DNA gyrase subunit B [Bacillus cereus BDRD-ST26]
 gi|228658497|gb|EEL14163.1| DNA gyrase subunit B [Bacillus cereus 95/8201]
 gi|228771034|gb|EEM19515.1| DNA gyrase subunit B [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228810498|gb|EEM56851.1| DNA gyrase subunit B [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228828154|gb|EEM73878.1| DNA gyrase subunit B [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228829218|gb|EEM74855.1| DNA gyrase subunit B [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228841585|gb|EEM86701.1| DNA gyrase subunit B [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|229267806|gb|ACQ49443.1| DNA gyrase, B subunit [Bacillus anthracis str. A0248]
          Length = 640

 Score =  636 bits (1640), Expect = e-180,   Method: Composition-based stats.
 Identities = 265/654 (40%), Positives = 385/654 (58%), Gaps = 21/654 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
             Q   ++YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY +
Sbjct: 3   QKQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I VS++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLH
Sbjct: 63  EINVSIEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS EL V V R+  I  QK+ RGIP++ L+      ++ GT   F+PDP+I
Sbjct: 122 GVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEI 180

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++ 
Sbjct: 181 FQETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 234

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
              ++  I  E    +  K G     VE ++ + E       S+ N I T EGGTHE G 
Sbjct: 235 LNRSKQPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGF 291

Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           + ALTR I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A
Sbjct: 292 KTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           +   E+   + F+ +L++NP  A K++E   +        ++ +    RK+A+    LPG
Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPG 411

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N 
Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++  ++ A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  +
Sbjct: 472 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGY 531

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPLF++ QG K  YA++E+  +KIL E     K    I R+KGLGEM  +QL ET
Sbjct: 532 IYIAQPPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 589

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639


>gi|229176169|ref|ZP_04303661.1| DNA gyrase subunit B [Bacillus cereus MM3]
 gi|228607328|gb|EEK64658.1| DNA gyrase subunit B [Bacillus cereus MM3]
          Length = 640

 Score =  636 bits (1640), Expect = e-180,   Method: Composition-based stats.
 Identities = 265/654 (40%), Positives = 385/654 (58%), Gaps = 21/654 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
             Q   ++YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY +
Sbjct: 3   QKQMEENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I VS++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLH
Sbjct: 63  EINVSIEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS EL V V R+  I  QK+ RGIP++ L+      ++ GT   F+PDP+I
Sbjct: 122 GVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEI 180

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++ 
Sbjct: 181 FQETIVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 234

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
              ++  I  E    +  K G     VE A+ + E       S+ N I T EGGTHE G 
Sbjct: 235 LNRSKQPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGF 291

Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           + ALTR I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A
Sbjct: 292 KTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           +   E+   + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPG
Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPG 411

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N 
Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++  ++ A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  +
Sbjct: 472 EVRTIITAIGTNIGGDFAIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 531

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPLF++ QG K  YA++E+  +KIL E     K    I R+KGLGEM  +QL ET
Sbjct: 532 IYIAQPPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 589

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639


>gi|222086041|ref|YP_002544573.1| DNA topoisomerase IV, B subunit [Agrobacterium radiobacter K84]
 gi|221723489|gb|ACM26645.1| DNA topoisomerase IV, B subunit [Agrobacterium radiobacter K84]
          Length = 689

 Score =  636 bits (1640), Expect = e-180,   Method: Composition-based stats.
 Identities = 452/691 (65%), Positives = 552/691 (79%), Gaps = 12/691 (1%)

Query: 3   DDSIDLFSTLP--PQSQGSSEKLKKSGEIPDSPAFA-----NQSASDNYDASSIRILEGL 55
           D+S DLFS LP  P+ + + +   K+     +PA A       S+++ Y A+SIR+LEGL
Sbjct: 2   DNSNDLFSGLPVSPKPETAEKPAPKAESPVAAPAPAPRAAPTTSSAEEYGANSIRVLEGL 61

Query: 56  EPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRG 115
           EPVRMRPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+A+ IEV LD  G+LTV DNGRG
Sbjct: 62  EPVRMRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHADFIEVHLDQRGYLTVTDNGRG 121

Query: 116 IPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR 175
           IPVENHP+ P KSTLE+I+T LHAGGKFD   YE SGGLHGVG+SVVNALSD+L V VAR
Sbjct: 122 IPVENHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVSVVNALSDDLEVEVAR 181

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
              ++ Q+FSRG+P   LE+   V N+RGTR+ F PDP+IFGD A FD AR+ +M +SKA
Sbjct: 182 NRKLYRQRFSRGVPQGGLEELGDVHNRRGTRVRFHPDPQIFGDHAKFDPARVFRMARSKA 241

Query: 236 YLSGRVKTCWSCDKEIAEK-YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           YL G V+  WSCD E+A     +P+K  F+FPGGLK YL+  + N   ++ EIF GK+EK
Sbjct: 242 YLFGGVEIRWSCDPELAPAGSDVPDKAVFHFPGGLKDYLKATMGNEFTVTREIFAGKSEK 301

Query: 295 KGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA 354
            GT  G++EWAI W   +P++ SYCNTI T EGGTHE+GLR+ALT+G+K YAELTQNKRA
Sbjct: 302 -GTGHGSLEWAITWYGGDPQVHSYCNTIPTPEGGTHEAGLRIALTKGLKNYAELTQNKRA 360

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             I +DD+MIS VG+LS+FIREPEF GQTK +L +++AQR VENALRDPFDHYL  NP E
Sbjct: 361 AGITTDDVMISGVGMLSIFIREPEFVGQTKDRLATVEAQRIVENALRDPFDHYLTDNPTE 420

Query: 415 ATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSA 474
           A KLLEWVIERSEERLRRRK++EVNRKTA+RKLRLPGKLADCSQN A G ELF+VEGDSA
Sbjct: 421 AEKLLEWVIERSEERLRRRKEKEVNRKTAVRKLRLPGKLADCSQNTAEGAELFLVEGDSA 480

Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
           GGSAKQARNR NQA+LPLRGKILNVASAG EK+  NQQI DLVQALGC TRS+YREEDLR
Sbjct: 481 GGSAKQARNRMNQAILPLRGKILNVASAGREKLSANQQIADLVQALGCGTRSKYREEDLR 540

Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDE 594
           Y+++++MTDADVDGAHIASLL+TFFYQEM +L+   HLFL  PPL++ITQG+KS+YA D+
Sbjct: 541 YQRIVVMTDADVDGAHIASLLITFFYQEMPELVRGGHLFLAVPPLYKITQGSKSIYARDD 600

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
            H+ +++E   K GKGKIEISRFKGLGEML +QLKET MD +KRTLLRV I++     + 
Sbjct: 601 AHRLELMESDFK-GKGKIEISRFKGLGEMLPAQLKETTMDPSKRTLLRVVIDEV--DFEG 657

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T+D+++ LMGTK + RF+FIQERA+F +++ 
Sbjct: 658 TRDAVDNLMGTKPEARFRFIQERAAFAENLD 688


>gi|145578017|gb|ABP82727.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar tohokuensis]
          Length = 632

 Score =  636 bits (1639), Expect = e-180,   Method: Composition-based stats.
 Identities = 264/649 (40%), Positives = 381/649 (58%), Gaps = 21/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R   I  QK+ RGIP++ L+      +K GT   F+PDP+IF +  
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 EYEFDTLSTRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E    +  K G     VE A+ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQATLPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF++ QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632


>gi|229099920|ref|ZP_04230843.1| DNA gyrase subunit B [Bacillus cereus Rock3-29]
 gi|229118983|ref|ZP_04248328.1| DNA gyrase subunit B [Bacillus cereus Rock1-3]
 gi|228664508|gb|EEL20004.1| DNA gyrase subunit B [Bacillus cereus Rock1-3]
 gi|228683535|gb|EEL37490.1| DNA gyrase subunit B [Bacillus cereus Rock3-29]
 gi|326937802|gb|AEA13698.1| DNA gyrase subunit B [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 640

 Score =  636 bits (1639), Expect = e-180,   Method: Composition-based stats.
 Identities = 265/654 (40%), Positives = 383/654 (58%), Gaps = 21/654 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
             Q   + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY +
Sbjct: 3   QKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I VS++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLH
Sbjct: 63  EINVSIEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS EL V V R   I  QK+ RGIP++ L+      +K GT   F+PDP+I
Sbjct: 122 GVGASVVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEI 180

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++ 
Sbjct: 181 FKETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 234

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
              ++  I  E    +  K G     VE A+ + E       S+ N I T EGGTHE G 
Sbjct: 235 LNRSKQPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGF 291

Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           + ALTR I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A
Sbjct: 292 KTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           +   E+   + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPG
Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPG 411

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N 
Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++  ++ A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  +
Sbjct: 472 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 531

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPLF++ QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET
Sbjct: 532 IYIAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 589

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639


>gi|327401204|ref|YP_004342043.1| DNA gyrase subunit B [Archaeoglobus veneficus SNP6]
 gi|327316712|gb|AEA47328.1| DNA gyrase, B subunit [Archaeoglobus veneficus SNP6]
          Length = 621

 Score =  636 bits (1639), Expect = e-180,   Method: Composition-based stats.
 Identities = 250/644 (38%), Positives = 366/644 (56%), Gaps = 26/644 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y A  I +L  +E VR RPGMYIGG   + LHHL  E++DN++DE +AG+   I V+L 
Sbjct: 2   EYTAEQIEVLGDIEAVRKRPGMYIGGIGLRGLHHLLWEIVDNSIDEALAGHCKNITVTLH 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G  +V D+GRGIP E H     +  +EI+LT LHAGGKF+   Y+++GGLHGVG+SVV
Sbjct: 62  KDGSASVEDDGRGIPTEVHE--LGRPAVEIVLTKLHAGGKFNKKAYKVAGGLHGVGLSVV 119

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+ L V V R   I+ QK+ RG+P++PL+   + +   GT+I F+PD +IF     F
Sbjct: 120 NALSEWLEVWVKRNGKIYYQKYERGVPVTPLQVIGETKE-TGTKIRFKPDEEIFETT-EF 177

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               + +  +  AYL+  ++     ++    K        FY   G+K ++    +N+ +
Sbjct: 178 RWDIVAQRLKELAYLNKGIRLKLIDERSGKSKE-------FYSEDGIKGFVAQLNKNKPV 230

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           I   I   + EK G     VE AI + +     +  + N I T EGGTH  G R  LTR 
Sbjct: 231 IHDVIHFSE-EKNGIM---VEVAIQFTDTEIENVLFFANNINTIEGGTHAVGFRAGLTRA 286

Query: 342 IKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
           I ++ +    K+   +   D+      ++SV + EP+F GQTKTKL + + +  VE+ + 
Sbjct: 287 INEFGK-KYVKKFKPLTGADIREGLTAVVSVKVPEPQFEGQTKTKLTNSEVKTVVESIVY 345

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIA 461
                +L ++P EA +++E  I   + R   RK RE+ R+     + LPGKLADCS    
Sbjct: 346 SEVLKWLEEHPNEANRIIEKCILAMKAREAARKAREIVRRKGEISITLPGKLADCSSKNP 405

Query: 462 HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
              ELFIVEG+SAGGSAKQAR+R  QA+LP+RGKI+NV  AG  K   N++I  +  A+G
Sbjct: 406 EERELFIVEGESAGGSAKQARDRRFQAILPIRGKIINVEKAGMAKALRNEEIKAIAAAIG 465

Query: 522 CRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581
                 +     RY +VIIMTDADVDGAHI +LLLTFFY+ M  LIE  +L++  PPL+R
Sbjct: 466 AGIGKDFDITKARYRRVIIMTDADVDGAHIRTLLLTFFYRYMKPLIESGYLYIAQPPLYR 525

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K  Y + +   + +LE          E+ R+KGLGEM   QL ET M+ + R L+
Sbjct: 526 VKKGKKVYYVYSDRELEDLLERIGNA-----EVQRYKGLGEMNPEQLWETTMNPHNRYLI 580

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V +          ++  + LMG   + R +FI E +  + ++ 
Sbjct: 581 QVTLED----AARAEELFSVLMGEDVEARKRFIMEHSKEVRNLD 620


>gi|42779086|ref|NP_976333.1| DNA gyrase subunit B [Bacillus cereus ATCC 10987]
 gi|42735001|gb|AAS38941.1| DNA gyrase, B subunit [Bacillus cereus ATCC 10987]
 gi|324323999|gb|ADY19259.1| DNA gyrase subunit B [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 640

 Score =  636 bits (1639), Expect = e-180,   Method: Composition-based stats.
 Identities = 266/654 (40%), Positives = 385/654 (58%), Gaps = 21/654 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
             Q   ++YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY +
Sbjct: 3   QKQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I VS++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLH
Sbjct: 63  EINVSIEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS EL V V R+  I  QK+ RGIP++ L+      ++ GT   F+PDP+I
Sbjct: 122 GVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEI 180

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++ 
Sbjct: 181 FQETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 234

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
              ++  I  E    +  K G     VE ++ + E       S+ N I T EGGTHE G 
Sbjct: 235 LNRSKQPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGF 291

Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           + ALTR I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A
Sbjct: 292 KTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           +   E+   + F+ +L++NP  A K++E   +        ++ +    RK+A+    LPG
Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPG 411

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N 
Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++  ++ A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  +
Sbjct: 472 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGY 531

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPLF+I QG K  YA++E+  +KIL E     K    I R+KGLGEM  +QL ET
Sbjct: 532 IYIAQPPLFKIQQGKKIQYAYNEKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 589

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639


>gi|240850782|ref|YP_002972182.1| DNA topoisomerase IV subunit B [Bartonella grahamii as4aup]
 gi|240267905|gb|ACS51493.1| DNA topoisomerase IV subunit B [Bartonella grahamii as4aup]
          Length = 688

 Score =  636 bits (1639), Expect = e-180,   Method: Composition-based stats.
 Identities = 428/691 (61%), Positives = 524/691 (75%), Gaps = 10/691 (1%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAF-----ANQSASDNYDASSIRILEGL 55
           M+D+  DLFS L       + K         S A      A  +  D+Y+A SIR+LEGL
Sbjct: 1   MSDNKKDLFSVLNKAQSRVNTKENTLQSPMKSKAMISKKSAKDTQEDDYNALSIRVLEGL 60

Query: 56  EPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRG 115
           EPVR+RPGMYIGGTD KALHHLF+E+IDNAMDE +AGYA+ IEVSLD NG++TV DNGRG
Sbjct: 61  EPVRLRPGMYIGGTDSKALHHLFAEIIDNAMDEAVAGYADFIEVSLDRNGYITVTDNGRG 120

Query: 116 IPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR 175
           IPVENHP+ P KSTLE+I+T LH+GGKFD   Y+ +GGLHGVGISVVNALSD++ V VAR
Sbjct: 121 IPVENHPQMPEKSTLEVIMTQLHSGGKFDGKAYQTAGGLHGVGISVVNALSDDMEVEVAR 180

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  ++ Q+FSRGIP S LE    V N+RGTR+ F PD +IFG+KA F+  ++ KM  SKA
Sbjct: 181 ERKLYRQRFSRGIPQSGLEDLGDVYNRRGTRVRFHPDREIFGEKAAFEPEKIYKMACSKA 240

Query: 236 YLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           YL G VK  W+CD  I E    IPEK  F+FP GLK YL + L++   ++SEIF+GKT++
Sbjct: 241 YLFGGVKIRWTCDPVILEGAKNIPEKAVFHFPNGLKDYLLSSLKDEYRVTSEIFSGKTQQ 300

Query: 295 KGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA 354
              H G+VEWAIAW   +  + SYCNTI T EGGTHE GLR AL RG+K YAEL  NKRA
Sbjct: 301 NNGH-GSVEWAIAWHGGDSCVQSYCNTIPTGEGGTHEIGLRQALLRGLKSYAELIGNKRA 359

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             I SDD+MIS   ILSVFI  PEF GQTK +L +++AQR VENA+RDPFDH+L  +P E
Sbjct: 360 TIITSDDIMISTAAILSVFISNPEFVGQTKDRLATIEAQRIVENAIRDPFDHWLANSPQE 419

Query: 415 ATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSA 474
           ATKLL+WVIER+EER++RR+ RE++RKTA+RKLRLPGKLADCSQN A G ELFIVEGDSA
Sbjct: 420 ATKLLDWVIERAEERVKRRQDREISRKTAVRKLRLPGKLADCSQNHAVGAELFIVEGDSA 479

Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
           GGSAKQARNR+NQA+LPLRGKILNVASA  EK+ ++Q I DL+ ALGC TRS+YRE+DLR
Sbjct: 480 GGSAKQARNRANQAILPLRGKILNVASAAHEKMNSSQTISDLILALGCGTRSKYREKDLR 539

Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDE 594
           YE++IIMTDADVDGAHIASLL+TFF+QEM DLI Q HL+L  PPL+RI+QG K  YA D+
Sbjct: 540 YERIIIMTDADVDGAHIASLLITFFFQEMPDLIHQGHLYLAVPPLYRISQGGKVAYARDD 599

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
            HK ++L+  +  GK K+EI RFKGLGEM A QLKET M   KRTLLRV I  D   +++
Sbjct: 600 IHKDELLKT-EFTGKAKVEIGRFKGLGEMRAEQLKETTMHPQKRTLLRVSI--DAVEMQE 656

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T+ ++  LMGTK + RF+FIQE ++F  ++ 
Sbjct: 657 TKKTVESLMGTKPEARFRFIQENSTFASNLD 687


>gi|145577997|gb|ABP82717.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar pulsiensis]
          Length = 632

 Score =  636 bits (1639), Expect = e-180,   Method: Composition-based stats.
 Identities = 264/649 (40%), Positives = 384/649 (59%), Gaps = 21/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            ++YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R+  I  QK+ RGIP++ L+      ++ GT   F+PDP+IF +  
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E    +  K G     VE ++ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K++E   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF++ QG K  YA++E+  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKVQQGKKIQYAYNEKELEKILAELSAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632


>gi|227873174|ref|ZP_03991465.1| DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus F0268]
 gi|227841005|gb|EEJ51344.1| DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus F0268]
          Length = 654

 Score =  636 bits (1639), Expect = e-180,   Method: Composition-based stats.
 Identities = 254/651 (39%), Positives = 375/651 (57%), Gaps = 20/651 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
            S  Y A  I+ILEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AG+ N I V
Sbjct: 18  GSKEYGADQIQILEGLEAVRKRPGMYIGSTSVRGLHHLVYEIVDNSVDEALAGFCNTITV 77

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            +  N  +TV DNGRGIPV+   K   KS LE++ T LHAGGKF  + Y++SGGLHGVG 
Sbjct: 78  KIHQNNSITVRDNGRGIPVDIQKKA-GKSALEVVFTVLHAGGKFGGAGYKVSGGLHGVGA 136

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPDPKIFGD 218
           SVVNALS+ L V V ++  I++  F++G    P+E       + +GT + F PD  IF +
Sbjct: 137 SVVNALSEWLDVKVYKEGKIYTMSFAKGKVTKPIECIGTCSEEEQGTEVHFLPDASIFEE 196

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              +D   L    +  A+L+  +K     ++E  EK        F++ GG++ ++    +
Sbjct: 197 SV-YDFETLKIRLRETAFLTKNLKIRLVDEREGQEKEKE-----FHYEGGIQEFVTFLNK 250

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            +  +  ++   + EK+      VE A+   +     I ++ N I T EGGTH +G + A
Sbjct: 251 GKEALYPDVIYCEGEKEKIL---VEVAMQHNDSYTENIYTFVNNINTPEGGTHLTGFKNA 307

Query: 338 LTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LT+    YA   +  +    ++  +D+      I+SV I +P+F GQTK KL + +AQ  
Sbjct: 308 LTKTFNDYARQNKLLKDSEANLSGEDIREGLTCIISVKIEDPQFEGQTKQKLGTSEAQVA 367

Query: 396 VENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454
           V+  + +   ++L QNP  A  + E  ++ +      R+ +    RK+A+  + LPGKLA
Sbjct: 368 VQGIVSEQLTYFLEQNPAVAKVICEKSILAQRARAAARKARDLTRRKSALDGVGLPGKLA 427

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS       E+FIVEGDSA G AK+ RN   QAVLPLRGK+LNV  A  ++I  N++I 
Sbjct: 428 DCSSKDPERCEIFIVEGDSALGPAKEGRNPETQAVLPLRGKVLNVQKARLDRIYANEEIK 487

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++ A G      +    LRY K+IIMTDADVDGAHI++L+LTF Y  M +LI + H++L
Sbjct: 488 GMITAFGTGIHEDFDLSKLRYHKIIIMTDADVDGAHISTLMLTFIYNFMPELIRKGHVYL 547

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPLF I +  K  YA+ +E  Q+IL+E    G    ++SRFKGLGEM   +L+ET +D
Sbjct: 548 AQPPLFTIQKNKKHYYAYSDEEYQRILKEIGSDGA---DVSRFKGLGEMNTEELQETTLD 604

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              RTLLRV ++       +   +   LMG + + R +FI++ A ++ ++ 
Sbjct: 605 PESRTLLRVNMSD--EDKAELDITFTTLMGDQVEPRREFIEQNARYVTNLD 653


>gi|75761791|ref|ZP_00741726.1| DNA gyrase subunit B [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74490724|gb|EAO54005.1| DNA gyrase subunit B [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 645

 Score =  636 bits (1639), Expect = e-180,   Method: Composition-based stats.
 Identities = 265/654 (40%), Positives = 383/654 (58%), Gaps = 21/654 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
             Q   + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY +
Sbjct: 8   QKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 67

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I VS++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLH
Sbjct: 68  EINVSIEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 126

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS EL V V R   I  QK+ RGIP++ L+      +K GT   F+PDP+I
Sbjct: 127 GVGASVVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEI 185

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++ 
Sbjct: 186 FKETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 239

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
              ++  I  E    +  K G     VE A+ + E       S+ N I T EGGTHE G 
Sbjct: 240 LNRSKQPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGF 296

Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           + ALTR I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A
Sbjct: 297 KTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 356

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           +   E+   + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPG
Sbjct: 357 RTITESVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPG 416

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N 
Sbjct: 417 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 476

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++  ++ A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  +
Sbjct: 477 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 536

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPLF++ QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET
Sbjct: 537 IYIAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 594

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 595 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 644


>gi|319408573|emb|CBI82226.1| topoisomerase protein [Bartonella schoenbuchensis R1]
          Length = 692

 Score =  636 bits (1639), Expect = e-180,   Method: Composition-based stats.
 Identities = 426/695 (61%), Positives = 530/695 (76%), Gaps = 14/695 (2%)

Query: 1   MTDDSIDLFS---------TLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRI 51
           M+D++ DLFS              SQ +S   K +       A  + + +++Y+ASSIR+
Sbjct: 1   MSDNNKDLFSILNKAQLRMETKANSQQTSVNSKATPAKVPVSASKDNAETNDYNASSIRV 60

Query: 52  LEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVD 111
           LEGLEPVR+RPGMYIGGTD KALHHLFSE+IDNAMDE +AGYA+LI+VSLD +G+LTV D
Sbjct: 61  LEGLEPVRLRPGMYIGGTDSKALHHLFSEIIDNAMDEAVAGYADLIDVSLDKDGYLTVTD 120

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171
           NGRGIP+ENHP+ P+KSTLE+I+T LH+GGKFD   Y+ SGGLHGVGISVVNALSD++ V
Sbjct: 121 NGRGIPIENHPQMPDKSTLEVIMTQLHSGGKFDGKAYQTSGGLHGVGISVVNALSDDMEV 180

Query: 172 TVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMT 231
            VAR+  ++ Q+FSRGIP S LE    V N+RGTR+ F PD KIFG+K  F+  ++ KM 
Sbjct: 181 EVARERKLYRQRFSRGIPQSGLEDLGDVYNRRGTRVRFHPDSKIFGEKTAFEPEKIYKMA 240

Query: 232 QSKAYLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
           +SKAYL   VK  WSCD  + E    +PEK  F+FP GLK YL + L ++  I++EIF+G
Sbjct: 241 RSKAYLFSGVKIRWSCDPIVLEGINNVPEKATFHFPDGLKDYLSSSLNSKYCITTEIFSG 300

Query: 291 KTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
           KT+++  H G+VEWA+AW   +  + SYCNTI T EGG+HE GLR AL RG+K YAEL  
Sbjct: 301 KTKQRANH-GSVEWAVAWHSGDAGVQSYCNTIPTREGGSHEIGLRQALLRGLKAYAELIG 359

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
           NKRA  I SDD+M SAV +LSVFIREPEF GQTK +L +++AQR VENA+RDPFDH+L  
Sbjct: 360 NKRAAIITSDDVMASAVAVLSVFIREPEFVGQTKDRLATIEAQRIVENAIRDPFDHWLAN 419

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           +P EATKLL+WVIER+EER++RR+ RE+NRKTA+RKLRLPGKLADCSQN A G ELFIVE
Sbjct: 420 SPQEATKLLDWVIERAEERVKRRQDREINRKTAVRKLRLPGKLADCSQNSAAGAELFIVE 479

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530
           GDSAGGSAKQARNR+NQA+LPLRGKILNVASA  EK+  +Q I DL+  LGC TRS+YRE
Sbjct: 480 GDSAGGSAKQARNRANQAILPLRGKILNVASAAREKMITSQTISDLILVLGCGTRSKYRE 539

Query: 531 EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVY 590
           +DLRYE+VIIMTDADVDGAHIASLL+TFF+QEM DLI   HL+L  PPL+RI+QG K  Y
Sbjct: 540 DDLRYERVIIMTDADVDGAHIASLLITFFFQEMPDLIRGGHLYLAVPPLYRISQGGKIAY 599

Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
           A ++ HK ++L+  +  GK KIEI RFKGLGEM A QLKET M   KRTLLR+ IN    
Sbjct: 600 ARNDAHKDELLKT-EFTGKAKIEIGRFKGLGEMRAEQLKETTMHPQKRTLLRISIN--AL 656

Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            ++ T+D +  LMG+K + RF+FIQE ++F  ++ 
Sbjct: 657 EMQKTKDIVESLMGSKPEARFRFIQENSTFAHNLD 691


>gi|218895146|ref|YP_002443557.1| DNA gyrase, B subunit [Bacillus cereus G9842]
 gi|228905437|ref|ZP_04069392.1| DNA gyrase subunit B [Bacillus thuringiensis IBL 4222]
 gi|228968646|ref|ZP_04129629.1| DNA gyrase subunit B [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|218542098|gb|ACK94492.1| DNA gyrase, B subunit [Bacillus cereus G9842]
 gi|228791075|gb|EEM38693.1| DNA gyrase subunit B [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228854257|gb|EEM98960.1| DNA gyrase subunit B [Bacillus thuringiensis IBL 4222]
          Length = 640

 Score =  636 bits (1639), Expect = e-180,   Method: Composition-based stats.
 Identities = 265/654 (40%), Positives = 383/654 (58%), Gaps = 21/654 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
             Q   + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY +
Sbjct: 3   QKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I VS++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLH
Sbjct: 63  EINVSIEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS EL V V R   I  QK+ RGIP++ L+      +K GT   F+PDP+I
Sbjct: 122 GVGASVVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEI 180

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++ 
Sbjct: 181 FKETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 234

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
              ++  I  E    +  K G     VE A+ + E       S+ N I T EGGTHE G 
Sbjct: 235 LNRSKQPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGF 291

Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           + ALTR I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A
Sbjct: 292 KTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           +   E+   + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPG
Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPG 411

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N 
Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++  ++ A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  +
Sbjct: 472 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 531

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPLF++ QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET
Sbjct: 532 IYIAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 589

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639


>gi|229164444|ref|ZP_04292372.1| DNA gyrase subunit B [Bacillus cereus R309803]
 gi|228619049|gb|EEK75947.1| DNA gyrase subunit B [Bacillus cereus R309803]
          Length = 640

 Score =  636 bits (1639), Expect = e-180,   Method: Composition-based stats.
 Identities = 265/654 (40%), Positives = 383/654 (58%), Gaps = 21/654 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
             Q   + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY +
Sbjct: 3   QKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I VS++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLH
Sbjct: 63  EINVSIEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS EL V V R   I  QK+ RGIP++ L+      +K GT   F+PDP+I
Sbjct: 122 GVGASVVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEI 180

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++ 
Sbjct: 181 FKETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 234

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
              ++  I  E    +  K G     VE A+ + E       S+ N I T EGGTHE G 
Sbjct: 235 LNRSKQPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGF 291

Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           + ALTR I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A
Sbjct: 292 KTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           +   E+   + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPG
Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPG 411

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N 
Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++  ++ A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  +
Sbjct: 472 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 531

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPLF++ QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET
Sbjct: 532 IYIAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 589

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639


>gi|323487683|ref|ZP_08092941.1| DNA gyrase subunit B [Planococcus donghaensis MPA1U2]
 gi|323398417|gb|EGA91205.1| DNA gyrase subunit B [Planococcus donghaensis MPA1U2]
          Length = 642

 Score =  636 bits (1639), Expect = e-180,   Method: Composition-based stats.
 Identities = 259/656 (39%), Positives = 379/656 (57%), Gaps = 20/656 (3%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A   +   ++Y+AS I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AG+
Sbjct: 2   AMEEKGLQESYEASQIQVLEGLEAVRKRPGMYIGSTGARGLHHLVWEIVDNSIDEALAGH 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
              I VS++ + ++ V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGG
Sbjct: 62  CTEIRVSIEPDNWIRVEDNGRGIPVGMQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG SVVNALS+   V V R       KF RG     L       +  GT I F+ D 
Sbjct: 121 LHGVGASVVNALSETTEVYVNRDEKRHYIKFERGAVTEELNVIGD-SDHTGTTIRFKADA 179

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IF +   ++   L    +  AYL+  +K     ++E  EK  I     ++F GG+K+Y+
Sbjct: 180 EIFKETTVYEFDILDHRLRELAYLNRGLKIVVKDEREGEEKEKI-----YHFEGGIKSYV 234

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHES 332
           +   +++  +  E    + E+ G    TVE A+ +       I S+ N I T EGGTHES
Sbjct: 235 EHLNKSKDPLHEEAIFVEAERDGI---TVEVAMQYNAGYAANIFSFANNINTHEGGTHES 291

Query: 333 GLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G + ALTR +  Y       +   +++  DD+      I+SV   +P+F GQTKTKL + 
Sbjct: 292 GFKTALTRVVNDYGRKKSMLKEQDLNLTGDDVREGLTAIISVKHPDPQFEGQTKTKLGNT 351

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRL 449
           +    V N   + F+ +L++NP  + K++E  I  S  R+  +K RE  R+ + +    L
Sbjct: 352 EVSTIVNNLFSNGFERFLLENPAVSKKIVEKGIMASHARMAAKKAREFTRRKSVLEVSSL 411

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADCS      +E++IVEGDSAGGSAK  R+R  QA+LPLRGKILNV  A  ++I  
Sbjct: 412 PGKLADCSSRDPKISEIYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDRILT 471

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N +I +++ ALG     ++  E  RY K++IMTDADVDGAHI +LLLTF ++ M  L+E 
Sbjct: 472 NDEIRNIITALGTGIGEEFNLEKARYHKIVIMTDADVDGAHIRTLLLTFLFRYMRPLLEA 531

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
            ++++  PPLF+I QG    Y + +   +  LE        K  I R+KGLGEM A+QL 
Sbjct: 532 GYIYIAQPPLFQIKQGKHVEYVYTDAQLKTALENLSPT--PKPNIQRYKGLGEMNATQLW 589

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +T MD + RTLL+V +N  +       ++ + LMG + + R  FI+E A ++ ++ 
Sbjct: 590 DTTMDPDVRTLLQVTLNDAMV----ADETFHILMGDEVEPRRNFIEENAKYVKNLD 641


>gi|325293012|ref|YP_004278876.1| DNA gyrase subunit B [Agrobacterium sp. H13-3]
 gi|325060865|gb|ADY64556.1| DNA gyrase subunit B [Agrobacterium sp. H13-3]
          Length = 706

 Score =  635 bits (1638), Expect = e-180,   Method: Composition-based stats.
 Identities = 449/710 (63%), Positives = 535/710 (75%), Gaps = 30/710 (4%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSAS------------------- 41
           M DDS DLFS LP      +EK + + +   +P  A  + +                   
Sbjct: 1   MMDDSNDLFSGLPVAPNSETEKNEDTAKPVKAPVSAAANVNVQPKPAAVAAVTTPPPPAP 60

Query: 42  -----DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
                D+Y ASSIR+LEGLEPVRMRPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+AN 
Sbjct: 61  VSPSGDDYGASSIRVLEGLEPVRMRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHANF 120

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV LD  GFLTV DNGRGIPVENHP+ P KSTLE+I+T LHAGGKFD   YE SGGLHG
Sbjct: 121 IEVHLDTEGFLTVTDNGRGIPVENHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHG 180

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+SVVNALSD L V VAR   ++ Q+FSRG P+  LE+   V N+RGTR+ F PDP+IF
Sbjct: 181 VGVSVVNALSDLLEVEVARNRKLYRQRFSRGAPIGGLEELGDVHNRRGTRVRFHPDPQIF 240

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI-PEKEEFYFPGGLKTYLQT 275
           GD A F+ AR+ +M +SKAYL G V+  WSCD  +    G  PEK  F+FPGGLK YL  
Sbjct: 241 GDHAKFEPARIFRMARSKAYLFGGVEIRWSCDPGMVPAGGEIPEKAVFHFPGGLKDYLAA 300

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLR 335
            L     ++ EIF+G+TEK G H G +EWA+ W   + +I SYCNTI T EGGTHE+G R
Sbjct: 301 TLGKEFTVTREIFSGRTEKTGGH-GALEWAVTWYGGDTQIHSYCNTIPTPEGGTHEAGFR 359

Query: 336 VALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           +ALT+G+K YAELTQNKRA  I +DD+MISA G+LSVFIREPEF GQTK KL +++AQR 
Sbjct: 360 IALTKGLKNYAELTQNKRAREITTDDVMISAAGMLSVFIREPEFVGQTKDKLATVEAQRI 419

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           VENALRDPFDHYL  NP EA KLL+WVIER+EERLRRRK++EVNRKTA+RKLRLPGKLAD
Sbjct: 420 VENALRDPFDHYLTGNPGEAAKLLDWVIERAEERLRRRKEKEVNRKTAVRKLRLPGKLAD 479

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CSQN A   ELFIVEGDSAGGSAKQARNR+NQA+LPLRGKILNV SA  EK+  NQQI D
Sbjct: 480 CSQNTAENAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVGSASREKLSANQQIAD 539

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           L+QALGC TR++YREEDLRYE++IIMTDADVDGAHIASLL+TFFYQEM +LI   HL+L 
Sbjct: 540 LIQALGCGTRTKYREEDLRYERIIIMTDADVDGAHIASLLITFFYQEMPELIRGNHLYLA 599

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+ I QG KS YA D+ H+ +++E   K    K+EI RFKGLGEM+A+QLKET MD 
Sbjct: 600 VPPLYVIRQGAKSAYARDDAHRAELMETVFK--GKKVEIGRFKGLGEMMAAQLKETTMDP 657

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            KRTLLRVEI+      + T+++++ LMGTKAD RF+FIQERA+F D++ 
Sbjct: 658 EKRTLLRVEIDDV--DFEGTREAVDNLMGTKADARFRFIQERAAFADNLD 705


>gi|301051746|ref|YP_003789957.1| DNA topoisomerase IV subunit B [Bacillus anthracis CI]
 gi|300373915|gb|ADK02819.1| DNA topoisomerase IV subunit B [Bacillus cereus biovar anthracis
           str. CI]
          Length = 640

 Score =  635 bits (1638), Expect = e-180,   Method: Composition-based stats.
 Identities = 265/654 (40%), Positives = 385/654 (58%), Gaps = 21/654 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
             Q   ++YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY +
Sbjct: 3   QKQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I VS++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLH
Sbjct: 63  EINVSIEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS EL V V R+  I  QK+ RGIP++ L+      ++ GT   F+PDP+I
Sbjct: 122 GVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKIIGDT-DQTGTITRFKPDPEI 180

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++ 
Sbjct: 181 FQETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 234

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
              ++  I  E    +  K G     VE ++ + E       S+ N I T EGGTHE G 
Sbjct: 235 LNRSKQPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGF 291

Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           + ALTR I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A
Sbjct: 292 KTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           +   E+   + F+ +L++NP  A K++E   +        ++ +    RK+A+    LPG
Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPG 411

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N 
Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++  ++ A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  +
Sbjct: 472 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGY 531

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPLF++ QG K  YA++E+  +KIL E     K    I R+KGLGEM  +QL ET
Sbjct: 532 IYIAQPPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 589

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639


>gi|228995401|ref|ZP_04155073.1| DNA gyrase subunit B [Bacillus mycoides Rock3-17]
 gi|229003015|ref|ZP_04160874.1| DNA gyrase subunit B [Bacillus mycoides Rock1-4]
 gi|228758243|gb|EEM07429.1| DNA gyrase subunit B [Bacillus mycoides Rock1-4]
 gi|228764354|gb|EEM13229.1| DNA gyrase subunit B [Bacillus mycoides Rock3-17]
          Length = 640

 Score =  635 bits (1638), Expect = e-180,   Method: Composition-based stats.
 Identities = 265/654 (40%), Positives = 384/654 (58%), Gaps = 21/654 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
             Q   ++YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY +
Sbjct: 3   QKQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I VS++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLH
Sbjct: 63  EINVSIEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS EL V V R+  I  QK+ RGIP + L+   +  +  GT   F+PDP+I
Sbjct: 122 GVGASVVNALSTELEVFVHREGKIHYQKYERGIPAADLKVIGET-DHTGTITRFKPDPEI 180

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   +D   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++ 
Sbjct: 181 FKETTEYDFDTLATRMRELAFLNRNIKLIIEDKRENKQK------KEFHYEGGIKSYVEH 234

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
              ++  I  E       K G     VE ++ + E       S+ N I T EGGTHE G 
Sbjct: 235 LNRSKQPIHEEPVYVDGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGF 291

Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           + ALTR I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A
Sbjct: 292 KTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           +   E+   + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPG
Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPG 411

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N 
Sbjct: 412 KLADCSSKDPSISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++  ++ A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  +
Sbjct: 472 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGY 531

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPLF++ QG K  YA++++  +KIL E   H K    I R+KGLGEM  +QL ET
Sbjct: 532 IYIAQPPLFKVQQGKKIQYAYNDKELEKILAELPAHPKPG--IQRYKGLGEMNPTQLWET 589

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639


>gi|21228521|ref|NP_634443.1| DNA gyrase, subunit B [Methanosarcina mazei Go1]
 gi|20907008|gb|AAM32115.1| DNA gyrase, subunit B [Methanosarcina mazei Go1]
          Length = 634

 Score =  635 bits (1638), Expect = e-180,   Method: Composition-based stats.
 Identities = 256/645 (39%), Positives = 372/645 (57%), Gaps = 21/645 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YDAS I++LEGLE VR RP MYIG TD + LHHL  EV+DN++DE +AG+ + I+V+++ 
Sbjct: 7   YDASHIQVLEGLEAVRKRPSMYIGSTDGRGLHHLVYEVVDNSIDEALAGFCSEIDVTINP 66

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           NG +TV+DNGRGIP++ HP    KS LE+++T LHAGGKFD +TY++SGGLHGVG+SVVN
Sbjct: 67  NGSVTVIDNGRGIPIDPHP-VHKKSALEVVMTILHAGGKFDKNTYKVSGGLHGVGVSVVN 125

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS+   V V+R    + Q++ RG P S + +         T+ TF+PD KIF     F 
Sbjct: 126 ALSEWTEVEVSRDGKKYFQRYIRGKPESDVREIGTSDTTG-TKTTFKPDTKIFETT-DFQ 183

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              LL   +  A+L+  +       +         + E F + GG+  +++   + +  +
Sbjct: 184 YDILLNRLRELAFLNRGLIINLKDLRSP-----EGQAETFNYSGGIIEFVEYLNKKKQPL 238

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
             +    + ++       VE A+ +       + S+ N I T EGGTH  G + ALTR  
Sbjct: 239 HEKPIYFERQRDD---MVVEIAMQYTNGYTENVYSFANNINTHEGGTHIIGFKTALTRVA 295

Query: 343 KKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
             Y +  +  K    +  DD+      I+SV + EP+F GQTKTKL + + +  V++ + 
Sbjct: 296 NDYIKANKLSKEDEKLTGDDVREGLTAIISVKLMEPQFEGQTKTKLGNSEVKGIVDSLVT 355

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNI 460
           D    Y  +NP  A  +L+  +     R   +K RE   RK+A+    LPGKLADCS   
Sbjct: 356 DGLAEYFEENPKVANIILDKALLAQRAREAAKKARELTRRKSALEVSTLPGKLADCSNKN 415

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
               E++IVEGDSAGGSAKQ R+RS QA+LPLRGKILNV  +   KI  N +++ L+ A+
Sbjct: 416 PAECEIYIVEGDSAGGSAKQGRDRSFQAILPLRGKILNVEKSRLAKILKNNEVISLITAI 475

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           G      +  E+ RY K+IIMTDADVDGAHI +LLLT F++ M  LI+  ++++  PPL+
Sbjct: 476 GTGVSEDFDLENARYHKIIIMTDADVDGAHIRTLLLTLFFRYMRHLIDAGYVYIAQPPLY 535

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           +I +G    YA+ ++     L+E  + G   + I R+KGLGEM   QL ET MD   RTL
Sbjct: 536 KIKKGKMDYYAYSDKELADKLKELGEKG---VAIQRYKGLGEMNPGQLWETTMDPESRTL 592

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           L+V +   +       +    LMG + + R  FI+  A  + D+ 
Sbjct: 593 LQVTLEDAIR----ADEIFRVLMGDEVEPRRNFIETHAKEVVDLD 633


>gi|228942642|ref|ZP_04105174.1| DNA gyrase subunit B [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228975572|ref|ZP_04136124.1| DNA gyrase subunit B [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228982208|ref|ZP_04142497.1| DNA gyrase subunit B [Bacillus thuringiensis Bt407]
 gi|228777560|gb|EEM25838.1| DNA gyrase subunit B [Bacillus thuringiensis Bt407]
 gi|228784182|gb|EEM32209.1| DNA gyrase subunit B [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228817068|gb|EEM63161.1| DNA gyrase subunit B [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 642

 Score =  635 bits (1638), Expect = e-180,   Method: Composition-based stats.
 Identities = 265/654 (40%), Positives = 383/654 (58%), Gaps = 21/654 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
             Q   + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY +
Sbjct: 5   QKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 64

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I VS++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLH
Sbjct: 65  EINVSIEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 123

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS EL V V R   I  QK+ RGIP++ L+      +K GT   F+PDP+I
Sbjct: 124 GVGASVVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEI 182

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++ 
Sbjct: 183 FKETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 236

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
              ++  I  E    +  K G     VE A+ + E       S+ N I T EGGTHE G 
Sbjct: 237 LNRSKQPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGF 293

Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           + ALTR I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A
Sbjct: 294 KTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 353

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           +   E+   + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPG
Sbjct: 354 RTITESVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPG 413

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N 
Sbjct: 414 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 473

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++  ++ A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  +
Sbjct: 474 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 533

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPLF++ QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET
Sbjct: 534 IYIAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 591

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 592 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 641


>gi|145577969|gb|ABP82703.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           mycoides]
          Length = 632

 Score =  635 bits (1638), Expect = e-180,   Method: Composition-based stats.
 Identities = 263/649 (40%), Positives = 385/649 (59%), Gaps = 21/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            ++YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R+  I  QK+ RGIP + L+   +  +  GT   F+PDP+IF +  
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPAADLKVIGET-DHTGTITRFKPDPEIFKETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +D   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 EYDFDTLATRMRELAFLNRNIKLIIEDKRENKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
           + I  E    +  K G     VE ++ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 APIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPSISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVII+TDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIITDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF++ QG K  YA++++  +KIL E   H K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKVQQGKKIQYAYNDKELEKILAELPAHPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632


>gi|228911333|ref|ZP_04075137.1| DNA gyrase subunit B [Bacillus thuringiensis IBL 200]
 gi|228848351|gb|EEM93201.1| DNA gyrase subunit B [Bacillus thuringiensis IBL 200]
          Length = 642

 Score =  635 bits (1638), Expect = e-180,   Method: Composition-based stats.
 Identities = 265/654 (40%), Positives = 383/654 (58%), Gaps = 21/654 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
             Q   + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY +
Sbjct: 5   QKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 64

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I VS++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLH
Sbjct: 65  EINVSIEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 123

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS EL V V R   I  QK+ RGIP++ L+      +K GT   F+PDP+I
Sbjct: 124 GVGASVVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEI 182

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++ 
Sbjct: 183 FKETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 236

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
              ++  I  E    +  K G     VE A+ + E       S+ N I T EGGTHE G 
Sbjct: 237 LNRSKQPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGF 293

Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           + ALTR I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A
Sbjct: 294 KTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 353

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           +   E+   + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPG
Sbjct: 354 RTITESVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPG 413

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N 
Sbjct: 414 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 473

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++  ++ A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  +
Sbjct: 474 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 533

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPLF++ QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET
Sbjct: 534 IYIAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 591

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 592 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 641


>gi|145577981|gb|ABP82709.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar seoulensis]
          Length = 632

 Score =  635 bits (1638), Expect = e-180,   Method: Composition-based stats.
 Identities = 263/649 (40%), Positives = 381/649 (58%), Gaps = 21/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R   I  QK+ RGIP++ L+      +K GT   F+PDP+IF +  
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E    +  K G     VE A+ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGG AKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGCAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF++ QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632


>gi|145577965|gb|ABP82701.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           mycoides]
          Length = 632

 Score =  635 bits (1637), Expect = e-180,   Method: Composition-based stats.
 Identities = 263/649 (40%), Positives = 385/649 (59%), Gaps = 21/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            ++YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R+  I  QK+ RGIP++ L+   +  ++ GT   F+PDP+IF +  
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGET-DQTGTITRFKPDPEIFQETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E    +  K G     VE ++ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K++E   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF++ QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632


>gi|152973859|ref|YP_001373376.1| DNA gyrase subunit B [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152022611|gb|ABS20381.1| DNA gyrase, B subunit [Bacillus cytotoxicus NVH 391-98]
          Length = 640

 Score =  635 bits (1637), Expect = e-180,   Method: Composition-based stats.
 Identities = 262/654 (40%), Positives = 385/654 (58%), Gaps = 21/654 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
             +  +++YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY +
Sbjct: 3   QKEMQANSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V ++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLH
Sbjct: 63  EINVVIEEDDSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS EL V V R+  I  QK+ RGIP++ L+   +  ++ GT   F+PDP+I
Sbjct: 122 GVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGET-DRTGTVTRFKPDPEI 180

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   +D   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++ 
Sbjct: 181 FKETTVYDFDILATRMRELAFLNRNIKLTIEDKRENKQK------KEFHYEGGIKSYVEH 234

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
              ++  I  E    +  K G     VE ++ + E       S+ N I T EGGTHE G 
Sbjct: 235 LNRSKQPIHEEPVYVEGAKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGF 291

Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           + ALTR I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A
Sbjct: 292 KTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           +   E+   + F+ +L++NP  A K++E   +        ++ +    RK+A+    LPG
Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPG 411

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N 
Sbjct: 412 KLADCSSKDPSISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++  ++ A+G      +     RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  +
Sbjct: 472 EVRTIITAIGTNIGGDFDISKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGY 531

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPLF++ QG K  YA++E+  ++IL E       K  I R+KGLGEM  +QL ET
Sbjct: 532 VYIAQPPLFKVQQGKKIQYAYNEKELERILAELPAQ--PKPSIQRYKGLGEMNPAQLWET 589

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639


>gi|254424108|ref|ZP_05037826.1| DNA gyrase, B subunit [Synechococcus sp. PCC 7335]
 gi|196191597|gb|EDX86561.1| DNA gyrase, B subunit [Synechococcus sp. PCC 7335]
          Length = 645

 Score =  635 bits (1637), Expect = e-180,   Method: Composition-based stats.
 Identities = 247/652 (37%), Positives = 373/652 (57%), Gaps = 16/652 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++NY A  I++LEGLEPVR RPGMYIG T  + LHHL  EV+DNA+DE +AG+   I  +
Sbjct: 2   ANNYGAQQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVYEVVDNAVDEALAGHCTHITAA 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST-YEISGGLHGVGI 159
           L+ +G +TV D+GRGIP + HP    KS LE +LT LHAGGKF   + Y++SGGLHGVG+
Sbjct: 62  LNADGSVTVTDDGRGIPTDIHP-TTGKSALETVLTVLHAGGKFGGDSGYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+ + VTV R+  + +Q+F +G P+  L+  +      GT++TF+PD  IF   
Sbjct: 121 SVVNALSEWVEVTVWREGKVHTQRFEQGNPIGKLKTSKGSTK-TGTQVTFKPDATIFTHT 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             FD   + +  +  AYL+  V   ++  +    K   P+   +++ GG++ Y++     
Sbjct: 180 VEFDYDTIARRLRELAYLNAGVDITFTDYRLDLIKADKPQVSHYFYEGGIREYVEYINNE 239

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
           +  +  ++    ++K G  +            +  +  + N I T +GGTH  GL+  LT
Sbjct: 240 KEPLHPDVIYVNSDKNGV-QVEAALQWCGDAFSDNLMGFANNIRTVDGGTHLEGLKTVLT 298

Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +   A   + ++    ++  +++      ++SV + +PEF GQTKTKL + + +  V+
Sbjct: 299 RTMNVIARKRKKRKDTESNMAGENIREGLTAVVSVKVPDPEFEGQTKTKLGNTEVRGIVD 358

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
           + + +    YL  NP  A  +LE  I+        +K R+ V RK+ +    LPGKL+DC
Sbjct: 359 SLVGEALTEYLDFNPSVADAILEKAIQAFNAAEAAKKARDLVRRKSVLESSTLPGKLSDC 418

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E+FIVEGDSAGGSAKQ R+R  QA+LPLRGKILN+      KI  N ++  L
Sbjct: 419 SSRDPGESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNNEVQSL 478

Query: 517 VQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           + ALG   + +    D LRY ++ +MTDADVDGAHI +LLLTFFY+   DL++Q ++++ 
Sbjct: 479 ITALGLGIKGEDFAPDTLRYHRICLMTDADVDGAHIRTLLLTFFYRYQRDLVDQGYIYIA 538

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+++ +G    Y + E+  Q  ++    +   K  I RFKGLGEM+  QL +T M+ 
Sbjct: 539 CPPLYKLERGKNHTYCYSEKELQDGIDAMPTN--AKYNIQRFKGLGEMMPQQLWDTTMNP 596

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685
             RTL RVEI        +       LMG +   R  FI+     ++  D+ 
Sbjct: 597 ETRTLKRVEIED----AAEADRIFTVLMGDRVAPRRDFIETYGPRLNMADLD 644


>gi|52145204|ref|YP_081624.1| DNA gyrase subunit B [Bacillus cereus E33L]
 gi|229094604|ref|ZP_04225671.1| DNA gyrase subunit B [Bacillus cereus Rock3-42]
 gi|229159054|ref|ZP_04287110.1| DNA gyrase subunit B [Bacillus cereus ATCC 4342]
 gi|300118805|ref|ZP_07056525.1| DNA gyrase subunit B [Bacillus cereus SJ1]
 gi|51978673|gb|AAU20223.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit B)
           [Bacillus cereus E33L]
 gi|228624473|gb|EEK81244.1| DNA gyrase subunit B [Bacillus cereus ATCC 4342]
 gi|228688851|gb|EEL42682.1| DNA gyrase subunit B [Bacillus cereus Rock3-42]
 gi|298723773|gb|EFI64495.1| DNA gyrase subunit B [Bacillus cereus SJ1]
          Length = 640

 Score =  634 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 266/654 (40%), Positives = 384/654 (58%), Gaps = 21/654 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
             Q   ++YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY +
Sbjct: 3   QKQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I VS++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLH
Sbjct: 63  EINVSIEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS EL V V R   I  QK+ RGIP++ L+      +K GT   F+PDP+I
Sbjct: 122 GVGASVVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEI 180

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++ 
Sbjct: 181 FKETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 234

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
              ++  I  E    +  K G     VE A+ + E       S+ N I T EGGTHE G 
Sbjct: 235 LNRSKQPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGF 291

Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           + ALTR I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A
Sbjct: 292 KTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           +   E+   + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPG
Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPG 411

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N 
Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++  ++ A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  +
Sbjct: 472 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 531

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPLF++ QG K  YA++E+  +KIL E     K    I R+KGLGEM  +QL ET
Sbjct: 532 IYIAQPPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 589

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639


>gi|149182285|ref|ZP_01860764.1| DNA gyrase subunit B [Bacillus sp. SG-1]
 gi|148849977|gb|EDL64148.1| DNA gyrase subunit B [Bacillus sp. SG-1]
          Length = 638

 Score =  634 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 257/653 (39%), Positives = 389/653 (59%), Gaps = 21/653 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            Q    +YD + I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + 
Sbjct: 2   EQEQRQSYDENQIQVLEGLEAVRKRPGMYIGSTSSKGLHHLVWEIVDNSIDEALAGYCSE 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+VS++ +  +TV DNGRGIPV  H K   +  +E+I+T LHAGGKF    Y++SGGLHG
Sbjct: 62  IKVSIEKDNSITVQDNGRGIPVGIHEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS EL V V R   I  QKF +G+P   L+   +  +  GT I F+PDP+IF
Sbjct: 121 VGASVVNALSTELEVFVHRDGKIHYQKFEKGVPSGDLKVTGE-SDVTGTIIHFKPDPEIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   ++   L    +  A+L+  +K     ++   +K        +++ GG+K+Y++  
Sbjct: 180 TETTEYEYDILANRLRELAFLNRGIKIIIEDNRVEDKKNE------YHYEGGIKSYVEHL 233

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
             ++ ++  E    + EK      +VE A+ + +     + S+ N I T EGGTHESG +
Sbjct: 234 NRSKEVVHEEPIYIEGEKDNI---SVEIALQYNDGFASNLYSFANNIHTYEGGTHESGFK 290

Query: 336 VALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR I  YA      +    ++  +D+      I+S+   +P+F GQTKTKL + +A+
Sbjct: 291 TALTRVINDYARKNHLYKESDANLSGEDVREGITAIISIKHPDPQFEGQTKTKLGNSEAR 350

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
              +    + F+ +L++NP+ A K+++  ++        ++ +    RK+A+    LPGK
Sbjct: 351 TITDALFSEHFESFLLENPVVARKVVDKGLMAARARLAAKKARELTRRKSALEVSSLPGK 410

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPLRGKI+NV  A  +KI +N +
Sbjct: 411 LADCSSRDPKISEIYIVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEKARLDKILSNNE 470

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           +  ++ ALG      +     RY+KV+IMTDADVDGAHI +LLLTFFY+ M  +IE  ++
Sbjct: 471 VRAMITALGTGIGEDFDISKARYQKVVIMTDADVDGAHIRTLLLTFFYRYMRQIIEAGYI 530

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL++I QG K  Y + ++  ++ L +     K    I R+KGLGEM A+QL ET 
Sbjct: 531 YIAQPPLYQIKQGKKIEYVYSDKQLEEALAQMPAQPKPG--IQRYKGLGEMNATQLWETT 588

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           MD   RTLL+V +   +    +  ++   LMG K + R  FI++ A+++ ++ 
Sbjct: 589 MDPEYRTLLQVSLEDAI----EADETFEMLMGDKVEPRRNFIEDNAAYVKNLD 637


>gi|120437084|ref|YP_862770.1| DNA gyrase subunit B [Gramella forsetii KT0803]
 gi|117579234|emb|CAL67703.1| DNA gyrase subunit B [Gramella forsetii KT0803]
          Length = 646

 Score =  634 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 257/661 (38%), Positives = 387/661 (58%), Gaps = 24/661 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + ++   NY A SI+ LEG+E VRMRP MYIG T  + LHHL  EV+DN++DE +AG+ 
Sbjct: 1   MSEEAKKHNYSADSIQALEGMEHVRMRPSMYIGDTGVRGLHHLVYEVVDNSIDEALAGHC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I+V+++ +  +T  DNGRGIP++ H K    S L++++T + AGGKFD  +Y++SGGL
Sbjct: 61  DNIKVTINEDNSITTEDNGRGIPIDLHKK-EGVSALQVVMTKIGAGGKFDKDSYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+S VNALS+ L   V R   ++ Q++  G PL P++   +     GT +TF+PDP 
Sbjct: 120 HGVGVSCVNALSEHLTAIVFRDGQVWQQEYELGKPLYPVKPTGET-ELSGTIVTFKPDPS 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     ++   L    +  AYL+  ++   +  +   E  G    ++F+   GLK +++
Sbjct: 179 IFTQTLEYNYDTLASRMRELAYLNKGIRISLTDKR-NKEDNGEFVHDDFHSEEGLKEFIR 237

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333
               NR  I  ++ + + EK       VE A+ +     E    Y N I T EGGTH SG
Sbjct: 238 FLDGNREPIIGDVISMEGEKNDIP---VEVAMVYNTSFSENLHSYVNNINTHEGGTHLSG 294

Query: 334 LRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F GQTKTKL + +
Sbjct: 295 FRRGLTTTLKKYADSSGLLDKVKFEITGDDFREGLTAIISVKVAEPQFEGQTKTKLGNRE 354

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLP 450
               V  A+ +  ++YL +NP +A  +++ VI  ++ R   +K RE+  RKT +    LP
Sbjct: 355 VTSAVSQAVSEMLENYLEENPNDAKTIVQKVILAAQARNAAKKAREMVQRKTVMSVGGLP 414

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL+DCS       E+F+VEGDSAGG+AKQ R+R  QA+LPLRGKILNV  A S ++ +N
Sbjct: 415 GKLSDCSDQDPEQCEVFLVEGDSAGGTAKQGRDRKFQAILPLRGKILNVEKAMSHRVFDN 474

Query: 511 QQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           ++I ++  ALG    ++   +      LRY KV+IM DADVDG+HI +L+LTFF++ M +
Sbjct: 475 EEIKNIYTALGVTIGTEEDSKALNLSKLRYHKVVIMCDADVDGSHIETLILTFFFRYMKE 534

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           LIE  H+++ +PPL+ + +G K  YA  E+ + +I E +     G ++I R+KGLGEM A
Sbjct: 535 LIENGHIYIATPPLYLVKKGQKKRYAWSEKERDEIAESYS----GGVQIQRYKGLGEMNA 590

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL +T MD   R L +V I+       +     + LMG +   R +FI++ A +  ++ 
Sbjct: 591 EQLWDTTMDPEFRILRQVNIDNGG----EADRIFSMLMGDEVPPRREFIEKNAKYA-NID 645

Query: 686 T 686
            
Sbjct: 646 A 646


>gi|229542310|ref|ZP_04431370.1| DNA gyrase, B subunit [Bacillus coagulans 36D1]
 gi|229326730|gb|EEN92405.1| DNA gyrase, B subunit [Bacillus coagulans 36D1]
          Length = 641

 Score =  634 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 258/648 (39%), Positives = 382/648 (58%), Gaps = 20/648 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y A  I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AG+ + I V +
Sbjct: 9   QSYGAEQIQVLEGLEAVRKRPGMYIGSTSARGLHHLVWEIVDNSIDEALAGFCDEINVFI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +  +TV DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG SV
Sbjct: 69  EKDNSITVKDNGRGIPVGIQEKV-GRPAVEVIMTILHAGGKFGGGGYKVSGGLHGVGASV 127

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS EL V V R   I+ QK+ RG P   L+   +  ++ GT   F+PDP+IF +   
Sbjct: 128 VNALSTELDVYVHRDGHIYYQKYRRGKPAFDLKIIGET-DRTGTTTHFKPDPEIFTETTE 186

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L    +  A+L+  +K      +E       P K+E+++ GG+K+Y++    ++ 
Sbjct: 187 FDFDILTTRLRELAFLNKGIKITIEDKREK-----NPRKQEYHYEGGIKSYVEHLNRSKE 241

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
           ++  E    + EK G    TVE ++ + +     I S+ N I T EGGTHESG + ALTR
Sbjct: 242 VLHKEPIYVEGEKDGI---TVEVSLQYNDGFASNIYSFANNIHTYEGGTHESGFKTALTR 298

Query: 341 GIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  YA      +    ++  +D+      I+S+   +P+F GQTKTKL + +A+   + 
Sbjct: 299 VINDYARKNNLIKENEANLTGEDVREGLTAIVSIKHPDPQFEGQTKTKLGNTEARTITDA 358

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCS 457
              + F+ ++++NP  A K++E  +  +  R+  +K      RK+A+    LPGKLADC+
Sbjct: 359 VFSETFEKFMMENPQVARKIVEKGLMAARARMAAKKARELTRRKSALESTSLPGKLADCT 418

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N +I  ++
Sbjct: 419 SRDPAESELYIVEGDSAGGSAKQGRDRMFQAILPLRGKILNVEKARLDKILSNAEIRTII 478

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG      +     RY KV+IMTDADVDGAHI +LLLTFFY+ M  LI+  ++++  P
Sbjct: 479 TALGTGVGEDFDISKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRPLIDAGYIYIAQP 538

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+++ QG +  Y + +   +++L         K  I R+KGLGEM   QL ET M+   
Sbjct: 539 PLYKVQQGKRVEYVYSDRGLEELLNTLPAQ--PKPAIQRYKGLGEMNPEQLWETTMEPAN 596

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           RT+L+V ++  +    +   +   LMG K + R  FI+E A ++ ++ 
Sbjct: 597 RTMLQVSLDDAI----EADGTFEMLMGDKVEPRRNFIEENAIYVKNLD 640


>gi|145577983|gb|ABP82710.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar sotto]
          Length = 632

 Score =  634 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 264/649 (40%), Positives = 382/649 (58%), Gaps = 21/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R   I  QK+ RGIP++ L+      +K GT   F+PDP+IF +  
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E    +  K G     VE A+ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAR 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF++ QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632


>gi|218961619|ref|YP_001741394.1| DNA gyrase subunit B [Candidatus Cloacamonas acidaminovorans]
 gi|167730276|emb|CAO81188.1| DNA gyrase subunit B [Candidatus Cloacamonas acidaminovorans]
          Length = 632

 Score =  634 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 251/649 (38%), Positives = 377/649 (58%), Gaps = 24/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S  Y AS+I++L+GLE VR RP MYIGGT E+ LHHL  EVIDN++DE +AGY + I  +
Sbjct: 3   SSTYTASNIKVLKGLEAVRKRPAMYIGGTSERGLHHLVYEVIDNSIDEALAGYCDEIICT 62

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +   G + V DNGRGIPV+   K      ++++LT LHAGGKFD+ +Y+++GGLHGVG+S
Sbjct: 63  ITTEGNIRVEDNGRGIPVDIQ-KDMGVPAVQVVLTVLHAGGKFDDKSYKVAGGLHGVGVS 121

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ L V + +    +  +F RG+P++ L+         GT +TFRPDP IF    
Sbjct: 122 VVNALSEFLEVNIFKDGKEYFMRFERGLPVTELQVLGDTNK-TGTVVTFRPDPLIFETT- 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L    +  A+L+  ++     ++            +F + GG+K++++   +N+
Sbjct: 180 EFSFDYLTSRLRELAFLNSGLRIILKDERS-------GRVHDFKYEGGIKSFVEYLNQNK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
             +        + K+G      E A+ + E     I S+ N I T EGGTH SG +  LT
Sbjct: 233 KPLFPNPIYISSVKEG---MEFEVALQYNEGYQENIFSFANNINTTEGGTHLSGFKSGLT 289

Query: 340 RGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  Y +     +        +D+      ++S+ I  P+F GQTKTKL + + +  V 
Sbjct: 290 RAVNTYIKNADLLKNEKVSPSGEDIREGLTAVISLKIANPQFEGQTKTKLQNSEVEGIVN 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
           +A+ +    Y  ++P EA  +    I  +  R   RK RE   RKT +    LPGKLADC
Sbjct: 350 SAVYEKLMEYFEEHPAEAKNITMKSILAARSREAARKARELTRRKTVLESGSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           + +    TELF+VEGDSAGGSAKQ R+RS QA+LPL GK+LN   A  +K+ NN +I  +
Sbjct: 410 TLSDPEKTELFLVEGDSAGGSAKQGRDRSFQAILPLWGKMLNTEKARVDKVLNNDKIQPI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + ALG     ++    LRY K+IIM DADVDG+HIA+LL+TFFY+ M  +IE+  L++  
Sbjct: 470 ILALGAGIGQEFDISKLRYHKIIIMADADVDGSHIATLLMTFFYRYMRPVIEEGKLYIAM 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF++ +G + VY ++EE + K + EF + G   + + R+KGLGEM A QL ET +D  
Sbjct: 530 PPLFQVRKGKQKVYVYNEEERDKAIREFGEKG---VLVQRYKGLGEMNAEQLWETTLDPK 586

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            R ++ ++++  +    +       LMG + + R +FIQE A ++ ++ 
Sbjct: 587 NRKMIAIKMDDAI----EADRMFTILMGDEVEPRREFIQENARYVKNLD 631


>gi|331092116|ref|ZP_08340947.1| DNA gyrase subunit B [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330402317|gb|EGG81888.1| DNA gyrase subunit B [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 638

 Score =  634 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 260/650 (40%), Positives = 381/650 (58%), Gaps = 19/650 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S  Y A  I+ILEGLE VR RPGMYIG T  + LHHL  E++DNA+DE +AGY + I VS
Sbjct: 2   STEYGADQIQILEGLEAVRKRPGMYIGSTSVRGLHHLVYEIVDNAVDEALAGYCDTIYVS 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TV+DNGRGIPV  + K      +E++ T LHAGGKF    Y++SGGLHGVG S
Sbjct: 62  INKDNSITVIDNGRGIPVGINHKA-GLPAVEVVFTVLHAGGKFGGGGYKVSGGLHGVGAS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDK 219
           VVNALS+ L V + +   I+ Q++ RG  +  LE        K GT++TF PD +IF + 
Sbjct: 121 VVNALSEWLEVEIYKDGKIYKQRYERGHVMYKLEVTGTCEPEKTGTKVTFLPDKEIFEET 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             FD   L +  +  A+L+  +K   + ++          ++ F++ GG+K ++    ++
Sbjct: 181 I-FDYDTLKQRFREMAFLTRNLKIILADER-----PEERIEKTFHYEGGIKEFVSYLNKS 234

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVAL 338
           ++ +  +I   + EK G     VE A+   +   + T  + N I T EGGTH  G R AL
Sbjct: 235 KTPLYEQIIYCEGEKDGV---AVEVAMQHNDSYSDNTYGFVNNITTPEGGTHIVGFRNAL 291

Query: 339 TRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           T+    YA   +  +    ++  +D+      I+SV I +P+F GQTK KL + +A+  V
Sbjct: 292 TKTFNDYARKNKLLKDSEPNLSGEDIREGLTAIVSVKIGDPQFEGQTKQKLGNSEARGAV 351

Query: 397 ENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           +N +      +L QNP  A   +E  V+ +      R+ +    RK+A+  + LPGKLAD
Sbjct: 352 DNIVSTQLQIFLEQNPSVAKMTVEKSVMAQRAREAARKARDLTRRKSALETMSLPGKLAD 411

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS       E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV  A  +KI  N +I  
Sbjct: 412 CSDKDPANCEIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDKIYANAEIKA 471

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ A G      +    LRY K+IIMTDADVDGAHI++LLLTF Y+ M DLI++ +++L 
Sbjct: 472 MITAFGTGIHDDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKEGYVYLA 531

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+++ +  K  YA+ ++   +IL E  + G  K  I R+KGLGEM A QL ET M  
Sbjct: 532 QPPLYKLEKNKKVWYAYSDDELNQILTEVGRDGNNK--IQRYKGLGEMDAEQLWETTMSP 589

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             R LLRV +++   +  +   +   LMG K + R +FI+E A ++ ++ 
Sbjct: 590 EHRVLLRVTMDE--ETSSELDLTFTTLMGDKVEPRREFIEENAKYVQNLD 637


>gi|153815427|ref|ZP_01968095.1| hypothetical protein RUMTOR_01662 [Ruminococcus torques ATCC 27756]
 gi|317500889|ref|ZP_07959101.1| DNA gyrase subunit B [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089209|ref|ZP_08338111.1| DNA gyrase subunit B [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145847286|gb|EDK24204.1| hypothetical protein RUMTOR_01662 [Ruminococcus torques ATCC 27756]
 gi|316897769|gb|EFV19828.1| DNA gyrase subunit B [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330405761|gb|EGG85290.1| DNA gyrase subunit B [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 645

 Score =  634 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 258/657 (39%), Positives = 378/657 (57%), Gaps = 19/657 (2%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
             ++      Y A  I+ILEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AGY
Sbjct: 2   GASSTEFDAEYGADQIQILEGLEAVRKRPGMYIGSTSTRGLHHLVYEIVDNSVDEALAGY 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
            + I+V+++ +  +TV DNGRGIPV  + K      +E++ T LHAGGKF    Y++SGG
Sbjct: 62  CDEIQVNINKDNSVTVCDNGRGIPVGINHKA-GLPAVEVVFTVLHAGGKFGGGGYKVSGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPD 212
           LHGVG SVVNALS+ L V +     I+ Q++ RG  +  L+   +   ++ GT +TF PD
Sbjct: 121 LHGVGASVVNALSEWLEVEIYHDGQIYKQRYERGKVVYKLKVVGECEPDRTGTTVTFFPD 180

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            +IF D   FD   L +  +  A+L+  +K           +     +  F++ GG+K +
Sbjct: 181 AEIFDDTV-FDYDTLKQRFREMAFLTKGLKIVLRD-----WRGEELREHTFHYEGGIKEF 234

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHE 331
           +    ++++ +  +I   +  K G     VE A+   +   E T  + N I T EGGTH 
Sbjct: 235 VTYLNKSKTPLYEQIIYCEGMKDGV---AVEIAMQHNDSYSENTYGFVNNITTPEGGTHI 291

Query: 332 SGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G R ALT+    YA   +  +    ++  DD+      I+SV I +P+F GQTK KL +
Sbjct: 292 EGFRGALTKTFNDYARKNKLLKDSEPNLSGDDIREGLTAIVSVKIEDPQFEGQTKQKLGN 351

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLR 448
            +A+  V + L    + +L QNP  A   +E  V+ +      R+ +    RK+A+  + 
Sbjct: 352 SEARGAVNSILSTQLEIFLEQNPSVAKITVEKSVMAQRAREAARKARDLTRRKSALEGMS 411

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS       E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV  A  +KI 
Sbjct: 412 LPGKLADCSDKDPVNCEIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDKIY 471

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            N +I  ++ A G      +    LRY K+IIMTDADVDGAHI++LLLTF Y+ M DLI+
Sbjct: 472 ANAEIKAMITAFGTGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIK 531

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           + +++L  PPL+++ +  K  YA+ +E   +IL E  +    K  I R+KGLGEM A QL
Sbjct: 532 EGYVYLAQPPLYKLEKNKKVWYAYSDEELNQILTEVGRDSNNK--IQRYKGLGEMDADQL 589

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            ET MD   R LLRV +++   +  +   +   LMG K + R +FI+E A ++ ++ 
Sbjct: 590 WETTMDPEHRILLRVTMDE--ETSSELDLTFTTLMGDKVEPRREFIEENAKYVKNLD 644


>gi|225028834|ref|ZP_03718026.1| hypothetical protein EUBHAL_03121 [Eubacterium hallii DSM 3353]
 gi|224953830|gb|EEG35039.1| hypothetical protein EUBHAL_03121 [Eubacterium hallii DSM 3353]
          Length = 643

 Score =  634 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 262/656 (39%), Positives = 387/656 (58%), Gaps = 19/656 (2%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           +    SA+  Y A  I+ILEGLE VR RPGMYIG T  K LHHL  E++DNA+DE +AG+
Sbjct: 2   SEEQISAAQEYGADQIQILEGLEAVRKRPGMYIGSTSSKGLHHLVYEIVDNAVDEALAGF 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
            + ++V ++ +  +TV DNGRGIPV  + K      +E++ T LHAGGKF    Y++SGG
Sbjct: 62  CDTVKVYINEDNSITVRDNGRGIPVGINKK-KGIPAVEVVFTILHAGGKFGGGGYKVSGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG SVVNALS  L V +  +  I+ Q++ RG  + PL+      +KRGT + F PDP
Sbjct: 121 LHGVGASVVNALSTWLEVDIFHEGKIYRQRYERGKVMYPLKIVGDT-DKRGTEVRFLPDP 179

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF +   FD + L +  +  A+L+  +K      +             F++ GG++ Y+
Sbjct: 180 TIFEETV-FDFSVLKQRLREMAFLTKGLKIVLKDKRPEENVALT-----FHYEGGIREYV 233

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   +++ ++  ++   + +K       VE A+   +     + S+ N I T EGGTH +
Sbjct: 234 EYLNKSKEVLYPQVIYCEGKKGDV---VVEVALQHNDSYNEGVYSFVNNITTPEGGTHLA 290

Query: 333 GLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALT+    YA   +  +    ++  DD+    V I+S+ I EP+F GQTK KL + 
Sbjct: 291 GFRSALTKTFNDYARKNKLLKDSEQNLTGDDIREGLVAIVSIKIPEPQFEGQTKQKLGNS 350

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRL 449
           +A+  V++ + +   ++L QNP  A  + E  V+ +      R+ +    RK+A+  + L
Sbjct: 351 EARGAVDSVVSEQLTYFLEQNPNVAKIICEKAVLAQRAREAARKARDLTRRKSALDGMSL 410

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADCS       E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV  +  +KI  
Sbjct: 411 PGKLADCSDKDPQNCEIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKSRLDKILV 470

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N +I  ++ A G      +    LRY K+IIMTDADVDGAHIA+LLLTF Y+ M DLI++
Sbjct: 471 NNEIRAMITAFGTGIHEDFDITKLRYNKIIIMTDADVDGAHIATLLLTFLYRFMPDLIKE 530

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
            H++L  PPL+++ +  K  YA+ +E   KIL +  + G  K  I R+KGLGEM ASQL 
Sbjct: 531 GHVYLAQPPLYKVEKNKKVWYAYSDEELNKILTDIGRDGNNK--IQRYKGLGEMDASQLW 588

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           ET MD  KR LLRV ++ D  +  +   + + LMG + + R +FI+  A ++ ++ 
Sbjct: 589 ETTMDPEKRILLRVNMDDD--AASELDMTFDTLMGDRVEPRREFIEANAKYVQNLD 642


>gi|194332868|ref|YP_002014728.1| DNA gyrase subunit B [Prosthecochloris aestuarii DSM 271]
 gi|194310686|gb|ACF45081.1| DNA gyrase, B subunit [Prosthecochloris aestuarii DSM 271]
          Length = 644

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 271/660 (41%), Positives = 382/660 (57%), Gaps = 25/660 (3%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
                 SAS +Y A++I+IL+G+E VR RP MYIG  + + LHHL  E++DN++DE +AG
Sbjct: 2   SETQTPSASSSYLATNIQILDGIEHVRKRPAMYIGDINVRGLHHLIYEIVDNSIDETLAG 61

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           Y + IE+SL+ +G +TV DNGRGIPV+ HP+   KS LE+++T + AGGKFD   Y++SG
Sbjct: 62  YNDTIEMSLNDDGSVTVSDNGRGIPVDMHPQ-KKKSALELVMTVIGAGGKFDKGAYKVSG 120

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG SVVNALS+   V V+R   ++ Q++ RG+P   ++   +  +K GT+ TF PD
Sbjct: 121 GLHGVGASVVNALSEWCEVEVSRDGKVWYQRYHRGVPQCEVKIIGET-DKTGTKTTFMPD 179

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
             IF     F    ++   +  A+L+  +K       +  E         F++ GG+K +
Sbjct: 180 ASIFKT-TEFRKDVIIDRMRELAFLNSVLKIVVKDTDDSEET--------FHYEGGIKEF 230

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           +     NR  +  E      E+  T    VE A+ + +     + SY N I T EGGTH 
Sbjct: 231 VTYTDHNRIALVKEPVYLYGERDTT---VVEIALQYNDSYQENVFSYVNNINTHEGGTHM 287

Query: 332 SGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G R ALTR +  YA+     + +   +  DD       I+SV + EP+F GQTKTKL +
Sbjct: 288 TGFRKALTRTLNAYAQKNDLLKNLKLSLTGDDFKEGLTAIISVKVAEPQFEGQTKTKLGN 347

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448
            + Q  VE+ + +    +L  NP     ++E V   +  R   RK +E   RK+ +    
Sbjct: 348 SETQSIVESIVNEQLAEFLESNPNVLKTIIEKVKSAALSRDAARKAKELTRRKSVLESTG 407

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS N     EL+IVEGDSAGGSAKQ R+RS QA+LPL+GKILNV  A   K+ 
Sbjct: 408 LPGKLADCSINDPEHCELYIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKARLHKML 467

Query: 509 NNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
            N++I  ++ ALG          + LRY K+IIMTDADVDGAHI +LLLTFF++ M  LI
Sbjct: 468 ENEEIKTIILALGTNFGEDEFMADKLRYGKIIIMTDADVDGAHIRTLLLTFFFRHMRPLI 527

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK--IEISRFKGLGEMLA 625
           E   +F+  PPL+ I  G +  YA DE+ +  I+E  KK  KGK  I I R+KGLGEM  
Sbjct: 528 EAGKVFIAQPPLYLIKAGKEQKYAWDEDERTTIMEMMKKSQKGKTNINIQRYKGLGEMNP 587

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL  T MD   R+LL+V +   +    +     + LMG K D R +FI++ A ++  + 
Sbjct: 588 EQLWSTTMDPEHRSLLQVTVENAM----EADQVFSTLMGDKVDPRREFIEKNARYVRRLD 643


>gi|255659815|ref|ZP_05405224.1| DNA gyrase, B subunit [Mitsuokella multacida DSM 20544]
 gi|260847890|gb|EEX67897.1| DNA gyrase, B subunit [Mitsuokella multacida DSM 20544]
          Length = 688

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 265/706 (37%), Positives = 388/706 (54%), Gaps = 40/706 (5%)

Query: 1   MTDDSI----DLFSTLPPQSQGSSEKLKKSGEIPDS-------------PAFANQSASDN 43
           M +D+     DL  T   Q + +    K+  ++ D               +    +   +
Sbjct: 1   MANDNDKKSIDLTLTPDDQPEAAPAPQKEVEDLTDKDLDTTGVEIHTDESSAEVTAVEAD 60

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y A  I+ILEGLE VRMRPGMYIG T E+ LHHL  EV+DN++DE +AGY + I+V++  
Sbjct: 61  YGAEQIQILEGLEAVRMRPGMYIGSTSERGLHHLVYEVVDNSIDEALAGYCDHIDVTIHK 120

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +  +TVVDNGRGIPV+ H     K  +E++LT LHAGGKF    Y++SGGLHGVG+SVVN
Sbjct: 121 DNSITVVDNGRGIPVDMHE--SGKPAVEVVLTVLHAGGKFGGDGYKVSGGLHGVGVSVVN 178

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS  + V V R   I+   F RG+   PL           TR+ F PDP+IF     + 
Sbjct: 179 ALSTSMEVQVKRDGKIYEIAFERGVTTKPLTVVGTTTETG-TRVHFMPDPEIFSVTT-YS 236

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L    +  ++L+  +      ++           E+F+F GG+ ++++     + ++
Sbjct: 237 YETLRHRLRELSFLNHGITIGLHDER-----VEPVRSEQFHFDGGISSFVEHLNRKKEVL 291

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
           + E       K  T    VE A+ + +     I S+ N I T+EGGTH +G ++ALTR  
Sbjct: 292 NPEPIYFNGVKDDT---VVEIAMQYNDSYQENIYSFVNNINTEEGGTHLAGFKLALTRAA 348

Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             +A        +  ++  DD+      ++S+ IREP+F GQTKTKL + + +  V++ +
Sbjct: 349 NDFARKQGILKDKDSNLSGDDVREGLTCVISLKIREPQFEGQTKTKLGNSEVRGIVDSIV 408

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQN 459
            +    Y  +NP    ++++  I  +  R   RK RE   RK A+    LPGKLADCS  
Sbjct: 409 TEGLSEYFDENPAITKRIIDKAIMAARAREAARKARELTRRKNALEVSSLPGKLADCSVK 468

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
                E+++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI  N +I  ++ A
Sbjct: 469 DPEQAEIYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKIFANAEIRTMITA 528

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
            G      +     RY K+IIMTDADVDGAHI +LLLTF Y+ M  LIE  H+++  PPL
Sbjct: 529 FGTGISEDFDLSKRRYGKIIIMTDADVDGAHIRTLLLTFLYRYMKPLIEHGHVYIAQPPL 588

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           ++I +G K  Y + ++   K L+E  + G   + + R+KGLGEM   QL ET MD   RT
Sbjct: 589 YQIRKGKKHWYTYSDDELSKKLDEVGRDG---VTVQRYKGLGEMNPEQLWETTMDPEGRT 645

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +LRV    ++   ++  +    LMG K + R +FI+E A  + ++ 
Sbjct: 646 MLRV----EMEDAEEADELFTILMGDKVEPRRQFIEENAKLVRNLD 687


>gi|145578015|gb|ABP82726.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar ostriniae]
          Length = 632

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 263/649 (40%), Positives = 383/649 (59%), Gaps = 21/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            + YD S I++LEGLE VR RPGMYIG T  K L+HL  E++DN++DE +AGY + I VS
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLYHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R   I  QK+ RGIP++ L+      +K GT   F+PDP+IF +  
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E    +  K G     VE A+ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF++ QG K  YA++++  +KIL E       K+ I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKVQQGKKIQYAYNDKELEKILAELPAQ--PKLGIQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632


>gi|317968499|ref|ZP_07969889.1| DNA gyrase subunit B [Synechococcus sp. CB0205]
          Length = 653

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 257/659 (38%), Positives = 371/659 (56%), Gaps = 16/659 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
                    Y A  I++LEGLEPVR RPGMYIG T  + LHHL  EV+DN++DE +AG+ 
Sbjct: 2   SEATKVQAAYGAEQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALAGHC 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           N I V+++ +G  +V DNGRGIP + HPK   KS LE +LT LHAGGKF    Y++SGGL
Sbjct: 62  NEIRVAIEEDGSCSVSDNGRGIPTDVHPK-TGKSALETVLTVLHAGGKFGAGGYKVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213
           HGVG+SVVNALS+ + V V RQ     Q+F RG P+  L  +     ++ GT + F+PD 
Sbjct: 121 HGVGVSVVNALSEWVEVVVYRQGKEHRQRFERGAPIGTLAIEPAADASRTGTTVRFKPDL 180

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG-IPEKEEFYFPGGLKTY 272
           +IF     FD   L    +  AYL+G VK  +  ++  A        +E +++ GG+K Y
Sbjct: 181 EIFTVGIEFDYNTLSARLRELAYLNGGVKIVFRDERPAARNAEGEAHEEIYHYEGGIKEY 240

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHES 332
           +      +  +  +I    +EK G  +            +  I  + N I T +GGTH  
Sbjct: 241 VAYMNAEKDALHPDIIYVNSEKDGV-QIEAALQWCVDAYSDNIFGFANNIRTVDGGTHIE 299

Query: 333 GLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           GL+  LTR +  +A+    ++    ++  +++      +LSV + +PEF GQTKTKL + 
Sbjct: 300 GLKTVLTRTLNTFAKKRGKRKESDSNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLGNT 359

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           + +  V++ + +    YL  NP     +LE  I+        R+ RE V RK+ +    L
Sbjct: 360 EVRGIVDSLVGEALGEYLEFNPSVIDLILEKAIQAFNAAEAARRARELVRRKSVLESSTL 419

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILN+      KI  
Sbjct: 420 PGKLADCSSRDPGESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYK 479

Query: 510 NQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           N +I  L+ ALG   + +  ++  LRY +++IMTDADVDGAHI +LLLTFFY+    L+E
Sbjct: 480 NTEIQALITALGLGIKGEEFDDKNLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQKSLVE 539

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             ++++  PPL+++ +G    Y ++E   +  +E F +  K    I RFKGLGEM+  QL
Sbjct: 540 GGYIYIACPPLYKVERGKNHTYCYNEADLKTTIEGFGE--KANFTIQRFKGLGEMMPKQL 597

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685
            ET MD + R + RVEI        +       LMG K   R +FI+  ++ +D   + 
Sbjct: 598 WETTMDPSTRMMKRVEI----ADAAEADRIFTILMGDKVAPRREFIETHSAELDLAQLD 652


>gi|158337618|ref|YP_001518793.1| DNA gyrase subunit B [Acaryochloris marina MBIC11017]
 gi|158307859|gb|ABW29476.1| DNA gyrase, B subunit [Acaryochloris marina MBIC11017]
          Length = 646

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 250/650 (38%), Positives = 367/650 (56%), Gaps = 15/650 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY A  I++LEGLEPVR RPGMYIG T  + LHHL  EV+DN++DE +AG+   I + L+
Sbjct: 4   NYSADQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALAGHCKHIHIYLN 63

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G + V D+GRGIP + HP    KS LE ++T LHAGGKFD  +Y++SGGLHGVGISVV
Sbjct: 64  EDGSVRVTDDGRGIPTDKHP-TTGKSALETVMTVLHAGGKFDGDSYKVSGGLHGVGISVV 122

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+ +   V R   + +Q+F RGIP S L  +   R + GT ITF PD  IF     F
Sbjct: 123 NALSEWVEAKVWRNGKVHTQRFERGIPKSELVVEPTDRKESGTAITFLPDDTIFTVTTEF 182

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L    +  AYL+  V+  +  ++    +   P+ E + + GG+K Y+     ++  
Sbjct: 183 DYKTLASRLRELAYLNAGVEISFHDNRLELLEADEPKVETYRYDGGIKEYVDYMNRDKEP 242

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGI 342
           I  E    + E+    +  V         +  +  + N I T +GGTH  GL+  LTR +
Sbjct: 243 IHEECIYVEGERNNV-QVEVALQWCRDAYSDNLLGFANNIRTIDGGTHLEGLKTVLTRTM 301

Query: 343 KKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
              A      +    ++  + +      ++SV + EPEF GQTKTKL + + +  V++ +
Sbjct: 302 NSLARKRSKLKDGDSNLGGEHIREGLTAVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLV 361

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQN 459
            +    YL  +P  A  ++E  ++        R+ RE V RK+ +    LPGKLADCS  
Sbjct: 362 GEVLTEYLDFHPNVADSVIEKALQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSR 421

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
               +E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILN+      KI  N +I  L+ A
Sbjct: 422 DPSTSEIYIVEGDSAGGSAKQGRDRGFQAILPLRGKILNIEKTDDAKIYKNNEIQSLITA 481

Query: 520 LGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           LG   + +  +   LRY ++I+MTDADVDGAHI +LLLTFFY+   +LI+Q ++++  PP
Sbjct: 482 LGLGIKGEEFDVSQLRYHRIILMTDADVDGAHIRTLLLTFFYRYQRELIDQGYIYIACPP 541

Query: 579 LFRITQGTKSVYAHDEEHKQKILE-EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           L++I +G    Y + +   Q +++ EF  +      I RFKGLGEM+ +QL +T M+   
Sbjct: 542 LYKIERGRSHYYCYSDRELQNLVQHEFPANAN--YTIQRFKGLGEMMPTQLWDTTMNPET 599

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA--SFIDDVG 685
           RTL +++I        +       LMG +   R +FI+       + ++ 
Sbjct: 600 RTLKQIDIED----AAEADRIFTILMGDRVAPRREFIETHGPRLNLAELD 645


>gi|313884315|ref|ZP_07818078.1| DNA gyrase, B subunit [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620468|gb|EFR31894.1| DNA gyrase, B subunit [Eremococcus coleocola ACS-139-V-Col8]
          Length = 639

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 245/655 (37%), Positives = 365/655 (55%), Gaps = 21/655 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            +    ++ Y+A  I++LEGLE VR RPGMYIG T    LHHL  E++DN++DE +AGY 
Sbjct: 1   MSEPIKNNGYNADQIQVLEGLEAVRKRPGMYIGTTSIDGLHHLVWEIVDNSIDEALAGYC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + IEV ++ +  +TV+DNGRGIPV+   K   +   E + T LHAGGKF N +Y++SGGL
Sbjct: 61  DHIEVFIEADNSITVIDNGRGIPVDIQSK-TGRPAAETVYTVLHAGGKFGNDSYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG +VVNALS  L + + R+  I   +F RG+    LE   +     GT++ F PD  
Sbjct: 120 HGVGAAVVNALSTHLTLEIFREGKIHHLEFERGLVTKELEVIGET-ELVGTKVNFVPDGT 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F   RL    Q  A+L+  ++      +E  +       + F++ GGLK++++
Sbjct: 179 IFTDTTDFKYERLKDRIQELAFLNRGLRISLEDKREERQAS-----DSFFYEGGLKSFIE 233

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESG 333
                +  +  E    + E        VE A+ + +       S+ N I T EGG HESG
Sbjct: 234 HLNHAKKPLHEEPIFLEGEMDDI---AVEIALQYTDSYSTNLLSFANNIHTHEGGMHESG 290

Query: 334 LRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            + ALTR I  YA      +    ++  +D       I+SV   +P+F GQTKTKL + +
Sbjct: 291 FKTALTRIINDYARNNNLLKDSDDNLSGEDTREGLTAIISVKHPDPQFEGQTKTKLGNSE 350

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLP 450
            +  V+      F+ +L++NP  A  ++E  ++        +R +    +K+ +    LP
Sbjct: 351 VRTIVDRLFTAEFNTFLLENPRVAKIIVEKGILAARARSAAKRAREMTRKKSGLEIANLP 410

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS   A   ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I  N
Sbjct: 411 GKLADCSSKEAEKCELFIVEGDSAGGSAKQGRSRMYQAILPIRGKILNVEKATMDRILAN 470

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  +  A+G    S++   ++RY K+IIMTDADVDGAHI +LLLT  ++ M  LIE  
Sbjct: 471 EEIRSMFTAMGTGFGSEFDVNNVRYHKLIIMTDADVDGAHIRTLLLTLIFRYMRPLIEAG 530

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPL+++  G K  Y   +E   K     K +   + ++ R+KGLGEM   QL E
Sbjct: 531 YVYIAQPPLYQVKVGKKETYLDTDEELNKWR---KANPDARYKLQRYKGLGEMDYEQLWE 587

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T M+   R LLRV++       +     ++ LMG   + R  FI++ A ++ ++ 
Sbjct: 588 TTMNPENRRLLRVKVED----AEVADQVMSMLMGEDVEPRRAFIEDNAVYVQNLD 638


>gi|167043616|gb|ABZ08310.1| putative DNA gyrase B [uncultured marine microorganism
           HF4000_APKG2M17]
          Length = 655

 Score =  634 bits (1634), Expect = e-179,   Method: Composition-based stats.
 Identities = 264/660 (40%), Positives = 380/660 (57%), Gaps = 23/660 (3%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
            +   A   AS+ Y AS+I++LEGLE VR RP MYIG    + LHHL +EV+DN++DE +
Sbjct: 6   KARCMAENEASNQYGASNIQVLEGLEAVRKRPAMYIGDIGPRGLHHLVNEVVDNSIDEAL 65

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AG+ + I+V +  +G +++ DNGRGIPV+ HP    +S LE+++TTLHAGGKFD  TY++
Sbjct: 66  AGHCDAIDVIIHEDGSISIKDNGRGIPVDMHP-IEKRSALEVVMTTLHAGGKFDKDTYKV 124

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN--KRGTRIT 208
           SGGLHGVG+S VNALS++L  ++ R   ++ Q F  G P+  + K   +++    GT + 
Sbjct: 125 SGGLHGVGVSCVNALSEKLEASIWRDGALWKQTFEYGDPVGAVAKVRDMKDGESTGTLVR 184

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F PD  IF     F   RL    +  AYL+  V       +E         ++E++F GG
Sbjct: 185 FWPDGGIFQTT-EFRFDRLADRLREMAYLNRHVYISIEDLREA-----EGLRDEYHFEGG 238

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           +  +++   E R+ I  E      E        VE A+ +       + S+ N I T EG
Sbjct: 239 IIEFVEYLDEARTPIHDETIYIADED---AEVPVEMAMRYNSGYTENVLSFVNNINTHEG 295

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH SG R ALTR +K YA+     + + +    DD       ILS+ + EP+F GQTKT
Sbjct: 296 GTHVSGFRRALTRTLKSYADKNNLLKNVKVDLSGDDFREGITVILSIKVAEPQFEGQTKT 355

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444
           KL + + Q  VE+ +      +L  +P E+ +++E VI  +E R   RK RE V RK A 
Sbjct: 356 KLGNSEVQGAVESLVFLKLGEWLDDHPKESKRIVEKVIIAAEARAAARKARELVQRKNAF 415

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADCS   A   E+++VEGDSAGGSAKQAR+R  QA+LPLRGKILNV  A  
Sbjct: 416 SSGGLPGKLADCSSKNAEECEIYLVEGDSAGGSAKQARDRHFQAILPLRGKILNVEKARL 475

Query: 505 EKIRNNQQIMDLVQALGCRT---RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
           ++I  N++I ++V ALG         +  E LRY K+I+MTDADVDGAHI +LLLTF Y+
Sbjct: 476 DRILANEEIRNIVTALGTGLGAGEDDFDPEKLRYHKIIVMTDADVDGAHIRTLLLTFLYR 535

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
            M+ L+E  ++++  PPL++  +G +  Y   ++  ++++E        K+ I R+KGLG
Sbjct: 536 HMHALVEAGYIYIAQPPLYKAKKGKQEEYCWTDKQLKEVIERIGGDSPEKVTIQRYKGLG 595

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           EM   QL +T M+   R L R+ I+             + LMG   + R KFI+  A + 
Sbjct: 596 EMNPDQLWDTTMNPETRLLQRITIDD----AAAADRIFSTLMGDAVEPRRKFIERNAKYA 651


>gi|145577977|gb|ABP82707.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar higo]
 gi|145577979|gb|ABP82708.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar kenyae]
 gi|145578009|gb|ABP82723.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar azorensis]
 gi|145578021|gb|ABP82729.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar zhaodongensis]
          Length = 632

 Score =  634 bits (1634), Expect = e-179,   Method: Composition-based stats.
 Identities = 265/649 (40%), Positives = 383/649 (59%), Gaps = 21/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R+  I  QK+ RGIP++ L+      ++ GT   F+PDP+IF +  
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +D   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E    +  K G     VE ++ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K++E   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF+I QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKIQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632


>gi|229051162|ref|ZP_04194706.1| DNA gyrase subunit B [Bacillus cereus AH676]
 gi|228722225|gb|EEL73626.1| DNA gyrase subunit B [Bacillus cereus AH676]
          Length = 640

 Score =  634 bits (1634), Expect = e-179,   Method: Composition-based stats.
 Identities = 266/654 (40%), Positives = 384/654 (58%), Gaps = 21/654 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
             Q   + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY +
Sbjct: 3   QKQMQENTYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I VS++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLH
Sbjct: 63  EINVSIEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS EL V V R+  I  QK+ RGIP++ L+      ++ GT   F+PDP+I
Sbjct: 122 GVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEI 180

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   +D   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++ 
Sbjct: 181 FQETTVYDFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 234

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
              ++  I  E    +  K G     VE ++ + E       S+ N I T EGGTHE G 
Sbjct: 235 LNRSKQPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGF 291

Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           + ALTR I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A
Sbjct: 292 KTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           +   E+   + F+ +L++NP  A K++E   +        ++ +    RK+A+    LPG
Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPG 411

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N 
Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++  ++ A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  +
Sbjct: 472 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 531

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPLF+I QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET
Sbjct: 532 IYIAQPPLFKIQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 589

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639


>gi|145577999|gb|ABP82718.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar roskildiensis]
          Length = 632

 Score =  634 bits (1634), Expect = e-179,   Method: Composition-based stats.
 Identities = 264/649 (40%), Positives = 383/649 (59%), Gaps = 21/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            ++YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V DNGRGIP+    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSILVTDNGRGIPIGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R   I  QK+ RGIP++ L+      +K GT   F+PDP+IF +  
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E    +  K G     VE A+ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVALQYNERYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF++ QG K  YA++E+  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632


>gi|225377589|ref|ZP_03754810.1| hypothetical protein ROSEINA2194_03239 [Roseburia inulinivorans DSM
           16841]
 gi|225210565|gb|EEG92919.1| hypothetical protein ROSEINA2194_03239 [Roseburia inulinivorans DSM
           16841]
          Length = 640

 Score =  634 bits (1634), Expect = e-179,   Method: Composition-based stats.
 Identities = 262/651 (40%), Positives = 380/651 (58%), Gaps = 19/651 (2%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
             + Y    I+ILEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AGY   IEV
Sbjct: 3   TENEYGGDQIQILEGLEAVRKRPGMYIGSTSARGLHHLVYEIVDNSVDEALAGYCKNIEV 62

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +++ +  +TV D+GRGIPV+ + K   KS LE++ T LHAGGKF    Y++SGGLHGVG 
Sbjct: 63  TINEDNSITVEDDGRGIPVDINHKA-GKSALEVVYTVLHAGGKFGGGGYKVSGGLHGVGA 121

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS +L V V R+  ++ Q +  G P  P++   +   +K GT++TF PD  IF +
Sbjct: 122 SVVNALSTKLKVEVYREGKVYFQSYKIGKPDEPVKVIGECGEDKHGTKVTFWPDGSIFEE 181

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              FD   L +  +  A+L+  ++   +  +E   +       +F++ GG+K ++    +
Sbjct: 182 TV-FDYDTLKQRLRETAFLTKGLRIVLTDLRENPVRTY-----DFHYAGGIKEFVTYLNK 235

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           ++  +  E+   +    G +   VE A+   +       S+ N I+T EGGTH +G R A
Sbjct: 236 SKEALYPEVIYCEGSGNGVY---VEVAMQHNDSYNELTLSFVNNIITPEGGTHLAGFRNA 292

Query: 338 LTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LT+    YA   +  +        DD+      I+SV I EP+F GQTK KL + +A+  
Sbjct: 293 LTKTFNAYARANKLLKDNEPALTGDDIREGLTAIISVKIEEPQFEGQTKQKLGNSEARGA 352

Query: 396 VENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454
           V++ + +   ++L QNP  A  + E  ++ +      R+ +    RKTA+  + LPGKLA
Sbjct: 353 VDSIVSEQLTYFLEQNPTVAKTICEKSLLAQRAREAARKARDLTRRKTALEGMSLPGKLA 412

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS       E+FIVEGDSAGGSAK AR+R+ QA+LPLRGKILNV  A  +KI  N +I 
Sbjct: 413 DCSDKDPKNCEIFIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARLDKIYGNAEIK 472

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++ A G      +    LRY K+IIMTDADVDGAHI++L+LTF Y+ M DLI++ H++L
Sbjct: 473 AMITAFGTGIHEDFDISKLRYNKIIIMTDADVDGAHISTLMLTFLYRFMPDLIKEGHVYL 532

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL++I +     YA+ ++    IL E  + G  K  I R+KGLGEM A QL ET MD
Sbjct: 533 AQPPLYKIEKNKNVWYAYSDDELNAILTEIGRDGNNK--IQRYKGLGEMDAEQLWETTMD 590

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             KR L RV I+    S  +   +   LMG K + R +FI+E A ++ ++ 
Sbjct: 591 PEKRILKRVMIDD--ESTSEIDITFTTLMGDKVEPRREFIEENAKYVQNLD 639


>gi|206970026|ref|ZP_03230979.1| DNA gyrase, B subunit [Bacillus cereus AH1134]
 gi|218232402|ref|YP_002364860.1| DNA gyrase subunit B [Bacillus cereus B4264]
 gi|228961757|ref|ZP_04123360.1| DNA gyrase subunit B [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|229072958|ref|ZP_04206154.1| DNA gyrase subunit B [Bacillus cereus F65185]
 gi|229112906|ref|ZP_04242437.1| DNA gyrase subunit B [Bacillus cereus Rock1-15]
 gi|229130739|ref|ZP_04259692.1| DNA gyrase subunit B [Bacillus cereus BDRD-Cer4]
 gi|229153652|ref|ZP_04281828.1| DNA gyrase subunit B [Bacillus cereus m1550]
 gi|229181739|ref|ZP_04309062.1| DNA gyrase subunit B [Bacillus cereus 172560W]
 gi|229193744|ref|ZP_04320685.1| DNA gyrase subunit B [Bacillus cereus ATCC 10876]
 gi|296500843|ref|YP_003662543.1| DNA gyrase subunit B [Bacillus thuringiensis BMB171]
 gi|51988024|dbj|BAD44713.1| gyraseB [Bacillus cereus ATCC 14579]
 gi|206734603|gb|EDZ51772.1| DNA gyrase, B subunit [Bacillus cereus AH1134]
 gi|218160359|gb|ACK60351.1| DNA gyrase, B subunit [Bacillus cereus B4264]
 gi|228589769|gb|EEK47647.1| DNA gyrase subunit B [Bacillus cereus ATCC 10876]
 gi|228601772|gb|EEK59270.1| DNA gyrase subunit B [Bacillus cereus 172560W]
 gi|228629838|gb|EEK86491.1| DNA gyrase subunit B [Bacillus cereus m1550]
 gi|228652756|gb|EEL08641.1| DNA gyrase subunit B [Bacillus cereus BDRD-Cer4]
 gi|228670585|gb|EEL25898.1| DNA gyrase subunit B [Bacillus cereus Rock1-15]
 gi|228710204|gb|EEL62182.1| DNA gyrase subunit B [Bacillus cereus F65185]
 gi|228797951|gb|EEM44961.1| DNA gyrase subunit B [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|296321895|gb|ADH04823.1| DNA gyrase subunit B [Bacillus thuringiensis BMB171]
          Length = 640

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 266/654 (40%), Positives = 384/654 (58%), Gaps = 21/654 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
             Q   + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY +
Sbjct: 3   QKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I VS++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLH
Sbjct: 63  EINVSIEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS EL V V R+  I  QK+ RGIP++ L+      ++ GT   F+PDP+I
Sbjct: 122 GVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEI 180

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   +D   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++ 
Sbjct: 181 FQETTVYDFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 234

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
              ++  I  E    +  K G     VE ++ + E       S+ N I T EGGTHE G 
Sbjct: 235 LNRSKQPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGF 291

Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           + ALTR I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A
Sbjct: 292 KTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           +   E+   + F+ +L++NP  A K++E   +        ++ +    RK+A+    LPG
Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPG 411

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N 
Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++  ++ A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  +
Sbjct: 472 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 531

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPLF+I QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET
Sbjct: 532 IYIAQPPLFKIQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 589

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639


>gi|145577985|gb|ABP82711.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar thompsoni]
          Length = 632

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 265/649 (40%), Positives = 384/649 (59%), Gaps = 21/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R+  I  QK+ RGIP++ L+      ++ GT   F+PDP+IF +  
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +D   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E    +  K G     VE ++++ E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLSYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K++E   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF+I QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKIQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632


>gi|78043837|ref|YP_361487.1| DNA gyrase subunit B [Carboxydothermus hydrogenoformans Z-2901]
 gi|77995952|gb|ABB14851.1| DNA gyrase, B subunit [Carboxydothermus hydrogenoformans Z-2901]
          Length = 635

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 266/646 (41%), Positives = 381/646 (58%), Gaps = 25/646 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y A  I++L+GLE VR RP MYIG T+EK LHHL  EV+DN++DE +AG+ N IEV +  
Sbjct: 10  YGAEEIQVLKGLEGVRKRPAMYIGSTNEKGLHHLVYEVVDNSIDEALAGFCNRIEVIIHK 69

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G +TV DNGRGIPV+ HP+   K  +E++LT LHAGGKF    Y++SGGLHGVG+SVVN
Sbjct: 70  DGSITVADNGRGIPVDIHPEV-GKPAVEVVLTMLHAGGKFGGGGYKVSGGLHGVGVSVVN 128

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS+ L V + R   ++ QKFSRG P++ L+   K ++  GT ITF+PD +IF     F+
Sbjct: 129 ALSEWLEVRIKRDGNLYYQKFSRGEPITELKIIGKSKS-TGTIITFKPDAEIFETV-EFN 186

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L K     +YL+  VK     ++   E       E F   GG+K YL+   +N+  +
Sbjct: 187 YDTLAKRLLELSYLNKNVKIILKDERINKE-------EIFEHSGGIKDYLKYLNKNKEPL 239

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
              I+  K + +      VE A+ +C      I S+ N I T EGGTHE G + ALTR I
Sbjct: 240 HKIIYFEKEKDEVV----VEVALQYCNSFSENILSFTNNINTTEGGTHEIGFKTALTRVI 295

Query: 343 KKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             YA+     +  ++    +D+      I+SV + +P+F GQTKTKLV+ + +  V++ +
Sbjct: 296 NDYAKKYNLIKENNLSLQGEDIREGLTAIISVKVPDPQFEGQTKTKLVNTEVRSIVDSIV 355

Query: 401 RDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
            D    YL +NP    KL+   +         R+ +    RKTA+    LPGKLADCS+ 
Sbjct: 356 SDYLSTYLEENPAVGKKLIENAIRAARAREAARKARELARRKTALESNTLPGKLADCSEK 415

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
                EL++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  +  +KI  N++I  ++ A
Sbjct: 416 DPSLCELYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRLDKILANEEIRAMITA 475

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           LG      +  E  RY ++IIMTDADVDGAHI +LLLTFFY+ +  LIE  ++++  PPL
Sbjct: 476 LGTGVDKDFDIEKARYHRLIIMTDADVDGAHIRTLLLTFFYRYLRPLIENGYVYIAQPPL 535

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           +++ +G    Y + ++  ++ L E  + G   + I R+KGLGEM   QL ET M+   RT
Sbjct: 536 YKVKKGKLEKYLYSDDELERYLNEIGREG---VTIQRYKGLGEMDPEQLWETTMNPETRT 592

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +L+V +           +    LMG K + R +FI++ A  + ++ 
Sbjct: 593 ILKVTLED----AAKADEIFTILMGDKVEPRREFIEKNAKLVRNLD 634


>gi|163868608|ref|YP_001609817.1| DNA topoisomerase IV subunit B [Bartonella tribocorum CIP 105476]
 gi|161018264|emb|CAK01822.1| topoisomerase protein [Bartonella tribocorum CIP 105476]
          Length = 688

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 432/691 (62%), Positives = 526/691 (76%), Gaps = 10/691 (1%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAF-----ANQSASDNYDASSIRILEGL 55
           M+D++ DLFS L       + K         S A      A  +  D+Y+A SIR+LEGL
Sbjct: 1   MSDNNKDLFSVLNKAQSRVNTKESTLQSPMKSKAMISKKSAKNTQEDDYNALSIRVLEGL 60

Query: 56  EPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRG 115
           EPVR+RPGMYIGGTD KALHHLF+E+IDNAMDE +AGYA+ IEVSLD NG++TV DNGRG
Sbjct: 61  EPVRLRPGMYIGGTDSKALHHLFAEIIDNAMDEAVAGYADSIEVSLDRNGYITVTDNGRG 120

Query: 116 IPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR 175
           IPVENHP+ P+KSTLE+I+T LH+GGKFD   Y+ +GGLHGVGISVVNALSD++ V VAR
Sbjct: 121 IPVENHPQMPDKSTLEVIMTQLHSGGKFDGKAYQTAGGLHGVGISVVNALSDDMEVEVAR 180

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  ++ Q+FSRGIP S LE    V N+RGTR+ F PD +IFG+KA F+  ++ KM  SKA
Sbjct: 181 ERKLYRQRFSRGIPQSGLENLGDVYNRRGTRVRFHPDSEIFGEKAAFNPEKIYKMACSKA 240

Query: 236 YLSGRVKTCWSCDKEIAEK-YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           YL G VK  WSCD  I E    IPEK  F+FP GLK YL   L++   ++SEIF+GKT++
Sbjct: 241 YLFGGVKIRWSCDPVILESVKNIPEKAVFHFPNGLKDYLLASLKDEYRVTSEIFSGKTQQ 300

Query: 295 KGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA 354
              H G+VEWAIAW   +P + SYCNTI T EGGTHE GLR AL RG+K YAEL  NKRA
Sbjct: 301 NNGH-GSVEWAIAWHGGDPCVQSYCNTIPTGEGGTHEIGLRQALLRGLKSYAELIGNKRA 359

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             I SDD+MIS   ILSVFI  PEF GQTK +L +++AQR VENA+RDPFDH+L  +P E
Sbjct: 360 AIITSDDIMISTAAILSVFISNPEFVGQTKDRLATIEAQRIVENAIRDPFDHWLANSPQE 419

Query: 415 ATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSA 474
           ATKLL+WVIER+EER+RRR+ RE++RKTA+RKLRLPGKLADCSQN A G ELFIVEGDSA
Sbjct: 420 ATKLLDWVIERAEERVRRRQDREISRKTAVRKLRLPGKLADCSQNHAAGAELFIVEGDSA 479

Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
           GGSAKQARNR+NQA+LPLRGKILNVASA  EK+ ++Q I DL+ ALGC TRS+YRE+DLR
Sbjct: 480 GGSAKQARNRANQAILPLRGKILNVASAAHEKMNSSQTISDLILALGCGTRSKYREKDLR 539

Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDE 594
           YE++IIMTDADVDGAHIASLL+TFF+QEM DLI Q HL+L  PPL+RI+QG K  YA D+
Sbjct: 540 YERIIIMTDADVDGAHIASLLITFFFQEMPDLIHQGHLYLAVPPLYRISQGGKVAYARDD 599

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
            HK ++L+  +  GK KIEI RFKGLGEM A QLKET M   KRTLLRV I  D   +++
Sbjct: 600 IHKDELLKT-EFTGKAKIEIGRFKGLGEMRAEQLKETTMHPQKRTLLRVSI--DAVEMQE 656

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T+ ++  LMGTK + RF+FIQE ++F  ++ 
Sbjct: 657 TKKTVESLMGTKPEARFRFIQENSTFASNLD 687


>gi|15965186|ref|NP_385539.1| DNA topoisomerase IV subunit B [Sinorhizobium meliloti 1021]
 gi|307309200|ref|ZP_07588871.1| DNA topoisomerase IV, B subunit [Sinorhizobium meliloti BL225C]
 gi|307321530|ref|ZP_07600925.1| DNA topoisomerase IV, B subunit [Sinorhizobium meliloti AK83]
 gi|15074366|emb|CAC46012.1| Probable topoisomerase IV subunit B [Sinorhizobium meliloti 1021]
 gi|306892837|gb|EFN23628.1| DNA topoisomerase IV, B subunit [Sinorhizobium meliloti AK83]
 gi|306900346|gb|EFN30962.1| DNA topoisomerase IV, B subunit [Sinorhizobium meliloti BL225C]
          Length = 686

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 442/689 (64%), Positives = 542/689 (78%), Gaps = 11/689 (1%)

Query: 3   DDSIDLFSTLPPQSQGSSEKLKKS-----GEIPDSPAFANQSASDNYDASSIRILEGLEP 57
           DDS DLFS +P Q + +    +K      G     PA      S +YDAS+I +LEGLEP
Sbjct: 2   DDSSDLFSAMPQQPKPADAAPRKPAAPAAGNEASRPAPKTSDGS-DYDASAIEVLEGLEP 60

Query: 58  VRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIP 117
           VR RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+AN I+V+LD +G+LTV DNGRGIP
Sbjct: 61  VRRRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHANFIDVNLDADGYLTVTDNGRGIP 120

Query: 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN 177
           VENHPKFP KSTLE+++T LHAGGKFD   YE SGGLHGVG+SVVNALSD+L V VAR  
Sbjct: 121 VENHPKFPGKSTLEVVMTVLHAGGKFDGKAYETSGGLHGVGVSVVNALSDDLEVEVARNR 180

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            ++ Q+FSRGI    LE    V N+RGTR+ F PDP+IFG  A F+ ARL +M +SKAYL
Sbjct: 181 RLYRQRFSRGIAQGGLEDLGDVHNRRGTRVRFHPDPQIFGPHARFEPARLFRMARSKAYL 240

Query: 238 SGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG 296
            G V+  WSCD   + E   IP++  F+FPGGLK YL   L     ++ EIF GK+EK G
Sbjct: 241 FGGVEIRWSCDPALLPEGSEIPDRAVFHFPGGLKDYLAATLGKEFTVTREIFAGKSEKSG 300

Query: 297 THRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
            H G++EWA+ W   + +I SYCNTI T EGGTHE+GLR+ALT+G+K YAELTQNKRA  
Sbjct: 301 GH-GSLEWAVTWYGGDQQIHSYCNTIPTPEGGTHEAGLRIALTKGLKNYAELTQNKRAAI 359

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           + +DD+MISA G+LSVFIREPEF GQTK KL +++AQR VENALRDPFDHYL  NP EA 
Sbjct: 360 VTTDDVMISAAGMLSVFIREPEFVGQTKDKLATVEAQRIVENALRDPFDHYLADNPAEAA 419

Query: 417 KLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           KLL+WV+ER+EER+RRRK++EV+RKTA+RKLRLPGKLADC+QN A G ELFIVEGDSAGG
Sbjct: 420 KLLDWVVERAEERVRRRKEKEVSRKTAVRKLRLPGKLADCAQNTAEGAELFIVEGDSAGG 479

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAKQARNR+NQA+LPLRGKILNVASAG EK+  NQQI DLVQALGC TRS+YREEDLRYE
Sbjct: 480 SAKQARNRANQAILPLRGKILNVASAGREKLGANQQIGDLVQALGCGTRSKYREEDLRYE 539

Query: 537 KVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEH 596
           ++IIMTDADVDGAHIASLL+TFFYQEM +LI   HL+L  PPL+R++QG+K++YA D+ H
Sbjct: 540 RIIIMTDADVDGAHIASLLITFFYQEMPELIRGGHLYLAVPPLYRLSQGSKTLYARDDAH 599

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
           +++++   + +G+GK+E+ RFKGLGEML +QLKET MD  KRTLL+VEI+      + T+
Sbjct: 600 REELM-RTEFNGRGKVELGRFKGLGEMLPAQLKETTMDPAKRTLLKVEIDDV--DFEGTR 656

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           D+++ LMGTKA+ RF+FIQERA F D++ 
Sbjct: 657 DAVDSLMGTKAEARFRFIQERAVFADNLD 685


>gi|228924238|ref|ZP_04087509.1| DNA gyrase subunit B [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228835456|gb|EEM80826.1| DNA gyrase subunit B [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 640

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 266/654 (40%), Positives = 383/654 (58%), Gaps = 21/654 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
             Q   + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY +
Sbjct: 3   QKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I VS++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLH
Sbjct: 63  EINVSIEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS EL V V R+  I  QK+ RGIP++ L+      ++ GT   F+PDP+I
Sbjct: 122 GVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEI 180

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   +D   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++ 
Sbjct: 181 FQETTVYDFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 234

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
              ++  I  E    +  K G     VE ++ + E       S+ N I T EGGTHE G 
Sbjct: 235 LNRSKQPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGF 291

Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           + ALTR I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A
Sbjct: 292 KTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           +   E+   + F+ +L++NP  A K++E   +        ++ +    RK+A+    LPG
Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPG 411

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N 
Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++  ++ A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  +
Sbjct: 472 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 531

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPLF+I QG K  YA+++   +KIL E     K    I R+KGLGEM  +QL ET
Sbjct: 532 IYIAQPPLFKIQQGKKIQYAYNDNELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 589

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639


>gi|229083320|ref|ZP_04215682.1| DNA gyrase subunit B [Bacillus cereus Rock3-44]
 gi|228699995|gb|EEL52618.1| DNA gyrase subunit B [Bacillus cereus Rock3-44]
          Length = 640

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 264/654 (40%), Positives = 383/654 (58%), Gaps = 21/654 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
             Q   + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY +
Sbjct: 3   QKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V+++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLH
Sbjct: 63  EINVAIEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS EL V V R+  I  QK+ RGIP++ L+      +  GT   F+PDP+I
Sbjct: 122 GVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DHTGTITRFKPDPEI 180

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   +D   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++ 
Sbjct: 181 FKETTEYDFDTLATRMRELAFLNRNIKLTIEDKRENKQK------KEFHYEGGIKSYVEH 234

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
              ++  I  E    +  K G     VE ++ + E       S+ N I T EGGTHE G 
Sbjct: 235 LNRSKQPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNHIYSFTNNIHTYEGGTHEVGF 291

Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           + ALTR I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A
Sbjct: 292 KTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           +   E+   + F+ +L++NP  A K++E   +        ++ +    RK+A+    LPG
Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPG 411

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N 
Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++  ++ A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  +
Sbjct: 472 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEYGY 531

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPLF++ QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET
Sbjct: 532 IYIAQPPLFKVQQGKKIQYAYNDKELEKILSELPAQPKPG--IQRYKGLGEMNPTQLWET 589

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639


>gi|30018283|ref|NP_829914.1| DNA gyrase subunit B [Bacillus cereus ATCC 14579]
 gi|228955743|ref|ZP_04117738.1| DNA gyrase subunit B [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|29893823|gb|AAP07115.1| DNA gyrase subunit B [Bacillus cereus ATCC 14579]
 gi|228803971|gb|EEM50595.1| DNA gyrase subunit B [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 642

 Score =  633 bits (1632), Expect = e-179,   Method: Composition-based stats.
 Identities = 266/654 (40%), Positives = 384/654 (58%), Gaps = 21/654 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
             Q   + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY +
Sbjct: 5   QKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 64

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I VS++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLH
Sbjct: 65  EINVSIEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 123

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS EL V V R+  I  QK+ RGIP++ L+      ++ GT   F+PDP+I
Sbjct: 124 GVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEI 182

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   +D   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++ 
Sbjct: 183 FQETTVYDFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 236

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
              ++  I  E    +  K G     VE ++ + E       S+ N I T EGGTHE G 
Sbjct: 237 LNRSKQPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGF 293

Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           + ALTR I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A
Sbjct: 294 KTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 353

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           +   E+   + F+ +L++NP  A K++E   +        ++ +    RK+A+    LPG
Sbjct: 354 RTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPG 413

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N 
Sbjct: 414 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 473

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++  ++ A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  +
Sbjct: 474 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 533

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPLF+I QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET
Sbjct: 534 IYIAQPPLFKIQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 591

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 592 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 641


>gi|217076995|ref|YP_002334711.1| DNA gyrase, B subunit [Thermosipho africanus TCF52B]
 gi|217036848|gb|ACJ75370.1| DNA gyrase, B subunit [Thermosipho africanus TCF52B]
          Length = 627

 Score =  633 bits (1632), Expect = e-179,   Method: Composition-based stats.
 Identities = 248/645 (38%), Positives = 371/645 (57%), Gaps = 22/645 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y A +I++L+GLEPVR RPGMYIG T +  LHHL  E++DN++DE + GY + I+V++ 
Sbjct: 2   DYSAQNIKVLKGLEPVRQRPGMYIGSTGKAGLHHLVYEIVDNSIDESLQGYCDTIKVTIF 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G + V DNGRGIPV+ HP+   KS LE+++TTLHAGGKF   +Y++SGGLHGVG SVV
Sbjct: 62  KDGSVEVEDNGRGIPVDIHPE-TGKSALEVVMTTLHAGGKFSKDSYKVSGGLHGVGASVV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L V V R   ++ Q++ RG P   ++   +    RGT + F+PDP IF     F
Sbjct: 121 NALSQWLEVEVHRDGKVYYQRYERGTPTCEVKIIGETEK-RGTTVRFKPDPLIFSTT-DF 178

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   +L   +  A+L+  +   +  ++   E+        F++ GG+K ++    +    
Sbjct: 179 DTDTILMRLRELAFLNPNITIYFKDERNNTERT-------FHYTGGIKEFVSHLSKGSKS 231

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGI 342
           +   ++     +K     + ++  +   +  +I S+ N I T +GGTH +G + A TR +
Sbjct: 232 LHEPVYISGEYEKIKVEVSFQYTDS---DFEKIYSFVNNIRTVDGGTHVTGFKSAFTRVV 288

Query: 343 KKYAELTQNKRAISIISDDLMISAVGILSVFIR-EPEFAGQTKTKLVSLDAQRTVENALR 401
            +    T   +  S+  DD+    V ++SV +   PEF GQTK+KL + + Q  V   +R
Sbjct: 289 NELGRKTGQLKKDSLRGDDVREGMVAVISVLMSSTPEFEGQTKSKLGNEEVQEAVAKVVR 348

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNI 460
           +    +   N      +++  +E  + R   +  RE+  RK+      LPGKLADC    
Sbjct: 349 EKLLEFFETNENTLKIIIQKALEAKKAREAAKHAREMVKRKSVFGSSSLPGKLADCITKK 408

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +ELFIVEGDSAGGSAKQAR+R+ QA+LPLRGKILNV  +   K+  N+Q+ D++ AL
Sbjct: 409 LEESELFIVEGDSAGGSAKQARDRNFQAILPLRGKILNVEKSSWLKLLKNEQVRDIITAL 468

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           G      +  + LRY K+IIMTDADVDGAHI +LLLT FY+ M +LIE+  +++  PPL+
Sbjct: 469 GVGIGDDFDIKKLRYGKIIIMTDADVDGAHIRTLLLTLFYRYMKELIEEGRIYIAQPPLY 528

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           ++T G    Y + +E  +   +  +     K EI R+KGLGEM   QL ET MD N R L
Sbjct: 529 KLTVGKDHYYFYSDEELEDFKKTLED---KKYEIQRYKGLGEMNPEQLWETTMDPNTRKL 585

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           L+V I       +   +    LMG+  + R +FI   A  + ++ 
Sbjct: 586 LKVSIED----AETADELFEMLMGSDTESRKEFIFRHALSVKEID 626


>gi|289422479|ref|ZP_06424322.1| DNA gyrase, B subunit [Peptostreptococcus anaerobius 653-L]
 gi|289157051|gb|EFD05673.1| DNA gyrase, B subunit [Peptostreptococcus anaerobius 653-L]
          Length = 635

 Score =  633 bits (1632), Expect = e-179,   Method: Composition-based stats.
 Identities = 260/650 (40%), Positives = 384/650 (59%), Gaps = 21/650 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           +   Y A  I++LEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AG  + I +
Sbjct: 2   SKQEYGADQIQVLEGLEAVRKRPGMYIGSTGPRGLHHLVYEVVDNSIDEALAGNCSEIYI 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           SL+ +G +TV DNGRGIPVE HPK    STLE +LT LHAGGKF    Y++SGGLHGVG+
Sbjct: 62  SLNDDGSVTVRDNGRGIPVEVHPK-TGLSTLETVLTVLHAGGKFGGGGYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALSD +   V+R   ++ Q++ +G+  + LE  ++ + + GT ITF PD  IF + 
Sbjct: 121 SVVNALSDWVVAEVSRDGKLYRQRYEKGVTKTKLEVVDENQKESGTSITFMPDASIFDEV 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L    +  ++L+  +K  +   ++  EK        F++ GGL  Y++     
Sbjct: 181 V-FSYETLEYRFRELSFLNRVIKIVFDDKRKGQEKSKT-----FHYTGGLIEYVKYLNRT 234

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ +  +I      +      T+E A+ + +     I S+ N I T EGG H SG + AL
Sbjct: 235 KNTLHDQIIYVDKMQDD---CTIELALQYTDAYSENIYSFANNINTHEGGVHLSGFKTAL 291

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           T+ +  YA        +  ++  +D+      I+SV + EP+F GQTKTKL +   +  V
Sbjct: 292 TKAMNDYARRNNILKDKDSNLTGEDIREGITAIVSVKLPEPQFEGQTKTKLGNTFMRGIV 351

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
           ++   +    ++ +NP  A  +++  +     R   +K RE   RK+ +    LPGKLAD
Sbjct: 352 DSIANEEIGAFMEENPSVARVIIDKCLRSQRAREAAKKARELTRRKSVLETTSLPGKLAD 411

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS+     +E+F+VEGDSAGGSAK  R+R+ QA+LPLRGKILNV  +  +KI ++++I +
Sbjct: 412 CSEKSPEKSEIFLVEGDSAGGSAKGGRDRNIQAILPLRGKILNVEKSRLDKILSSEEIKN 471

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ A GC     + E  LRY K+IIMTDADVDGAHI +LLLTFF++ M  LIEQ +++  
Sbjct: 472 MITAFGCGIGEDFDEAKLRYHKIIIMTDADVDGAHIRTLLLTFFFRYMRPLIEQGYVYAA 531

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPLF+I +  K  YA+ +     +L+E  + G    EISR+KGLGEM A+QL ET MD 
Sbjct: 532 MPPLFKIKKAKKEYYAYTDRELGSLLDEVGRQGT---EISRYKGLGEMNANQLWETTMDP 588

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +R L +V I   +       ++ + LMG K   R +FI+E A ++ ++ 
Sbjct: 589 EQRILQQVTIEDAIF----ADETFSMLMGDKVAPRREFIEENAKYVRNLD 634


>gi|166032886|ref|ZP_02235715.1| hypothetical protein DORFOR_02607 [Dorea formicigenerans ATCC
           27755]
 gi|166027243|gb|EDR46000.1| hypothetical protein DORFOR_02607 [Dorea formicigenerans ATCC
           27755]
          Length = 643

 Score =  633 bits (1632), Expect = e-179,   Method: Composition-based stats.
 Identities = 253/656 (38%), Positives = 376/656 (57%), Gaps = 19/656 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            A +     Y A  I+ILEGLE VR RPGMYIG T  + LHHL  E++DNA+DE +AG+ 
Sbjct: 1   MATEKVQHEYGADEIQILEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNAVDEALAGFC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I V+++ +  +TV DNGRGIPV  + K      +E++ T LHAGGKF    Y++SGGL
Sbjct: 61  DTIHVTINPDNSVTVTDNGRGIPVGINHK-SGLPAVEVVFTVLHAGGKFGGGGYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213
           HGVG SVVNALS  L V +  +  ++ Q++ RG     LE   +    K GT++TF PD 
Sbjct: 120 HGVGASVVNALSVWLEVEICHEGKVYRQRYERGKVAKKLEVIGECEPGKTGTKVTFLPDG 179

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IF     FD + L +  +  A+L+  +K     ++        P ++ F++ GG+K ++
Sbjct: 180 EIFETTI-FDYSILQQRFREMAFLTKGLKIVLRDER-----PQEPIEKTFHYEGGIKEFV 233

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +    + + +  +I   +      +  +VE A+   +        + N I T EGGTH  
Sbjct: 234 EYLNRSTTPLYEQIIYCEG---IVNNVSVEVAMQHNDSYNENSYGFVNNITTPEGGTHIV 290

Query: 333 GLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALT+    YA   +  +    ++  +D+      I+SV I +P+F GQTK KL + 
Sbjct: 291 GFRNALTKTFNDYARKNKLLKDNEPNLTGEDIREGLTAIISVKIEDPQFEGQTKQKLGNS 350

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRL 449
           +A+  V+N + +    +L QNP  A   +E  V+ +      R+ +    RK+A+  + L
Sbjct: 351 EARGAVDNVVSEQLQIFLEQNPQVAKVTVEKSVMAQRAREAARKARDLTRRKSALDGMSL 410

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADCS       E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV  A  ++I  
Sbjct: 411 PGKLADCSDKNPEKCEIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDRIYG 470

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N +I  ++ A G      +    LRY K+IIMTDADVDGAHI++LLLTF Y+ M DLI++
Sbjct: 471 NAEIKAMITAFGTGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFMYRFMPDLIKE 530

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
            +++L  PPL+++ +  K  YA+ +E    IL+E  +    K  I R+KGLGEM A QL 
Sbjct: 531 GYVYLAQPPLYKLERNKKVWYAYSDEELDSILQEVGRDNNNK--IQRYKGLGEMDAEQLW 588

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +T MD   R LLRV ++    +  +   +   LMG K + R +FI+E A ++ ++ 
Sbjct: 589 DTTMDPEHRVLLRVTMDD--ETASELDLTFTTLMGDKVEPRREFIEENAQYVQNLD 642


>gi|145578001|gb|ABP82719.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar shandongiensis]
          Length = 632

 Score =  633 bits (1632), Expect = e-179,   Method: Composition-based stats.
 Identities = 263/649 (40%), Positives = 380/649 (58%), Gaps = 21/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R   I  QK+ RGIP++ L+      +K GT   F+PDP+IF +  
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E    +  K G     VE A+ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      + ++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A   KI +N ++  +
Sbjct: 410 SSKDPAISGIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLGKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF++ QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632


>gi|145577967|gb|ABP82702.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           cereus]
          Length = 632

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 264/649 (40%), Positives = 383/649 (59%), Gaps = 21/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSIRVTDNGRGIPVGTQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R+  I  QK+ RGIP++ L+      ++ GT   F+PDP+IF +  
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +D   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E    +  K G     VE ++ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K++E   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +K+ +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKVLSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF+I QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKIQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632


>gi|229015410|ref|ZP_04172416.1| DNA gyrase subunit B [Bacillus cereus AH1273]
 gi|229026934|ref|ZP_04183257.1| DNA gyrase subunit B [Bacillus cereus AH1272]
 gi|228734392|gb|EEL85063.1| DNA gyrase subunit B [Bacillus cereus AH1272]
 gi|228745889|gb|EEL95885.1| DNA gyrase subunit B [Bacillus cereus AH1273]
          Length = 640

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 264/654 (40%), Positives = 383/654 (58%), Gaps = 21/654 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
             Q   + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY +
Sbjct: 3   QKQMQENAYDESQIQVLEGLEAVRKRPGMYIGTTSGKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I VS++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLH
Sbjct: 63  EINVSIEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS EL V V R   I  QK+ RGIP++ L+      +K GT   F+PDP+I
Sbjct: 122 GVGASVVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEI 180

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++ 
Sbjct: 181 FKETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 234

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
              ++  I  E    +  K G     VE A+ + E       S+ N I T EGGTHE G 
Sbjct: 235 LNRSKQPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGF 291

Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           + ALTR I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A
Sbjct: 292 KTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           +   E+   + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPG
Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPG 411

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N 
Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++  ++ A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  +
Sbjct: 472 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 531

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPLF++ QG K  YA++++  ++IL E     K    I R+KGLGEM  +QL ET
Sbjct: 532 IYIAQPPLFKVQQGKKIQYAYNDKELERILAELPAQPKPG--IQRYKGLGEMNPTQLWET 589

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639


>gi|328543970|ref|YP_004304079.1| Topoisomerase IV, subunit B:DNA gyrase, subunit B:DNA topoisomerase
           II:DNA gyrase, subunit B, C-terminal:ATP-binding region
           [Polymorphum gilvum SL003B-26A1]
 gi|326413714|gb|ADZ70777.1| Topoisomerase IV, subunit B:DNA gyrase, subunit B:DNA topoisomerase
           II:DNA gyrase, subunit B, C-terminal:ATP-binding region
           [Polymorphum gilvum SL003B-26A1]
          Length = 703

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 406/691 (58%), Positives = 509/691 (73%), Gaps = 11/691 (1%)

Query: 1   MTDDSIDLFSTLPP-----QSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGL 55
           M+  + DLF+         +   +    + +   P  P        ++Y A+ I +LEGL
Sbjct: 17  MS-GNKDLFARAEDVAPAPKPVAAPASAEPARPRPARPVAVASPGGEDYTAADIEVLEGL 75

Query: 56  EPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRG 115
           EPVR RPGMYIGGTDEKALHHLF+EV+DN+MDE +AG+A  I+V+LD +G+LTV DNGRG
Sbjct: 76  EPVRRRPGMYIGGTDEKALHHLFAEVVDNSMDEAVAGHATWIDVALDADGYLTVTDNGRG 135

Query: 116 IPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR 175
           IPV+ HPKF +KS LE+I+TTLHAGGKFD+  YE SGGLHGVG+SVVNALS+EL V VAR
Sbjct: 136 IPVDPHPKFKDKSALEVIMTTLHAGGKFDSKVYETSGGLHGVGVSVVNALSEELVVEVAR 195

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
              ++ Q F RG P+ PLE     +N+RGT + FRPDP+IFG  A F  +RLLKM +SKA
Sbjct: 196 ARKLYRQTFRRGHPVGPLELIGDTQNRRGTMVRFRPDPQIFGPGARFTPSRLLKMARSKA 255

Query: 236 YLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           YL G V+  W CD   IAE+   P +  F+FPGGL+ +L  +L     +  ++F G+T+K
Sbjct: 256 YLFGGVEIRWHCDPALIAEQDQTPAEAVFHFPGGLRDFLTERLAGERRVVEDLFAGRTDK 315

Query: 295 KGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA 354
            G+H G+VEWA+ W   +  + SYCNT+ T EGGTHE+GLR AL RG+K YA+L  NK+ 
Sbjct: 316 AGSH-GSVEWAVTWFAGDGFLNSYCNTVPTPEGGTHEAGLRYALLRGLKAYADLVGNKKG 374

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             I  DD+M SA G+LSVFIREPEF GQTK KL + +A R  ENA+RD FDH+L  +P +
Sbjct: 375 GLITGDDVMTSAGGMLSVFIREPEFVGQTKDKLATNEATRITENAIRDAFDHWLTASPNQ 434

Query: 415 ATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSA 474
           A +LLEWVI+R+EERLRRR++++V RKTA+RKLRLPGKLADCS N + GTELFIVEGDSA
Sbjct: 435 ANRLLEWVIDRAEERLRRRQEKDVARKTAVRKLRLPGKLADCSANQSEGTELFIVEGDSA 494

Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
           GGSAKQARNRSNQAVLPLRGKILNVA+AG +K+  NQQI DLVQALGC TRSQYR+ DLR
Sbjct: 495 GGSAKQARNRSNQAVLPLRGKILNVANAGRDKLAANQQIADLVQALGCGTRSQYRDTDLR 554

Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDE 594
           YEKVIIMTDADVDGAHIASLL+TFFY+EM +LI   HLFL  PPL+R++QG  +VYA D+
Sbjct: 555 YEKVIIMTDADVDGAHIASLLITFFYREMPELIRNSHLFLAVPPLYRLSQGGTTVYARDD 614

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
            HK ++L    K G+ KIEI RFKGLGEM+ +QLKET M  +KRTL+RV + +      +
Sbjct: 615 AHKDELLASVFK-GRSKIEIGRFKGLGEMMPAQLKETTMAPDKRTLMRVMVEE--EDEAE 671

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T+ ++ +LMG K + RF FIQE A F  D+ 
Sbjct: 672 TRSAVERLMGNKPEARFSFIQEHAEFAHDLD 702


>gi|229148043|ref|ZP_04276382.1| DNA gyrase subunit B [Bacillus cereus BDRD-ST24]
 gi|228635468|gb|EEK91959.1| DNA gyrase subunit B [Bacillus cereus BDRD-ST24]
          Length = 642

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 265/654 (40%), Positives = 384/654 (58%), Gaps = 21/654 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
             Q   + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY +
Sbjct: 5   QKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 64

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I VS++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLH
Sbjct: 65  EINVSIEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 123

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS EL V V R+  I  QK+ RGIP++ L+      ++ GT   F+PDP+I
Sbjct: 124 GVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEI 182

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   +D   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++ 
Sbjct: 183 FQETTVYDFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 236

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
              ++  I  +    +  K G     VE ++ + E       S+ N I T EGGTHE G 
Sbjct: 237 LNRSKQPIHEDPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGF 293

Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           + ALTR I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A
Sbjct: 294 KTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 353

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           +   E+   + F+ +L++NP  A K++E   +        ++ +    RK+A+    LPG
Sbjct: 354 RTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPG 413

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N 
Sbjct: 414 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 473

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++  ++ A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  +
Sbjct: 474 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 533

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPLF+I QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET
Sbjct: 534 IYIAQPPLFKIQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 591

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 592 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 641


>gi|294496880|ref|YP_003560580.1| DNA gyrase subunit B [Bacillus megaterium QM B1551]
 gi|294346817|gb|ADE67146.1| DNA gyrase, B subunit [Bacillus megaterium QM B1551]
          Length = 638

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 258/648 (39%), Positives = 382/648 (58%), Gaps = 21/648 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y+A  I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I V +
Sbjct: 7   QAYEADQIQVLEGLEAVRKRPGMYIGSTSAKGLHHLVWEIVDNSIDEALAGYCDEINVII 66

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +  +TV DNGRGIPV    K   +  +E+ILT LHAGGKF    Y++SGGLHGVG SV
Sbjct: 67  EKDNSITVKDNGRGIPVGIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGASV 125

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  L V V R   +  QK+ RG+P + L+   +  +K GT I FRPD +IF +   
Sbjct: 126 VNALSTSLEVHVHRDGKVHYQKYERGVPAADLKVVGET-DKTGTVIQFRPDGEIFTETLE 184

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +D   L    +  A+L+  +K      +E        ++ E+++ GG+K+Y++    ++ 
Sbjct: 185 YDFDTLANRLRELAFLNRGIKITIEDKRE------EDKRREYHYEGGIKSYVEHLNRSKE 238

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALTR 340
           +I  E    +  +      +VE AI + +        + N I T EGGTHE+G + ALTR
Sbjct: 239 VIHEEPIYIEGNRDNI---SVEIAIQYNDSYTSNLYSFANNIHTYEGGTHEAGFKTALTR 295

Query: 341 GIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  YA           ++  +D+      I+S+   +P+F GQTKTKL + +A+   ++
Sbjct: 296 VINDYARKNSVFKDSDANLTGEDVREGITAIISIKHPDPQFEGQTKTKLGNSEARTITDS 355

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCS 457
              +  + YL++NPI A K++E  +  +  R+  +K      RK+A+    LPGKLADCS
Sbjct: 356 VFAEHLETYLLENPIVAKKVIEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCS 415

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +EL++VEGDSAGGSAKQ R+R  QA+LPLRGKI+NV  A  +KI +N +I  ++
Sbjct: 416 SKDPSISELYVVEGDSAGGSAKQGRSRHFQAILPLRGKIINVEKARLDKILSNNEIRTII 475

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG      +     RY K++IMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  P
Sbjct: 476 TALGTGIGDDFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYVYIAQP 535

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL++++QG K  YA+++   +++L  F +    K  + R+KGLGEM   QL ET MD   
Sbjct: 536 PLYKVSQGKKVEYAYNDRQLEEVLASFPE--GAKPNLQRYKGLGEMNPEQLWETTMDPEF 593

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           RTLL+V +   +    +  ++   LMG K + R  FI+E A ++ ++ 
Sbjct: 594 RTLLQVNLQDAI----EADETFEILMGDKVEPRRNFIEENAQYVKNLD 637


>gi|145577975|gb|ABP82706.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar entomocidus]
          Length = 632

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 265/649 (40%), Positives = 384/649 (59%), Gaps = 21/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R+  I  QK+ RGIP++ L+      ++ GT   F+PDP+IF +  
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +D   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E    +  K G     VE ++ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K++E   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E +RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKVRYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF+I QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKIQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 588 VRSLLQVSLQGAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632


>gi|254430578|ref|ZP_05044281.1| DNA gyrase, B subunit [Cyanobium sp. PCC 7001]
 gi|197625031|gb|EDY37590.1| DNA gyrase, B subunit [Cyanobium sp. PCC 7001]
          Length = 652

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 258/658 (39%), Positives = 375/658 (56%), Gaps = 15/658 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
                    Y A  I++LEGLEPVR RPGMYIG T  + LHHL  EV+DNA+DE +AG+ 
Sbjct: 2   SEATKVQAAYGAEQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVYEVVDNAVDEALAGHC 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I V L+ +G   V DNGRGIP + HP+   KS LE +LT LHAGGKF +  Y++SGGL
Sbjct: 62  DQILVVLNEDGSCAVSDNGRGIPTDIHPR-TGKSALETVLTVLHAGGKFGSGGYKVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS+ + VTV R + + +Q+F RG  +  L      + + GT + F+PD +
Sbjct: 121 HGVGVSVVNALSEWVQVTVYRHDQVHTQRFERGAAIGSLASAPGEKGRTGTTVCFKPDSE 180

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-YGIPEKEEFYFPGGLKTYL 273
           IF     FD A L    +  AYL+G V+  +  +++ A    G P ++ +++ GG+K Y+
Sbjct: 181 IFTGGISFDYATLSSRLRELAYLNGGVRIVFRDERQSARNAAGEPHEDIYFYEGGIKEYV 240

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESG 333
                 +  +  +I     EK+G  +            +  I  + N I T +GGTH  G
Sbjct: 241 AYMNAEKDPLHPDIIYVNAEKEGV-QVEAALQWCVDAYSDSILGFANNIRTVDGGTHIEG 299

Query: 334 LRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           L+  LTR +  +A+    ++    ++  +++      +LSV + EPEF GQTKTKL + +
Sbjct: 300 LKTVLTRTLNAFAKKRGKRKDADANLAGENIREGLTAVLSVKVPEPEFEGQTKTKLGNTE 359

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  V+  + +    +L  NP     +LE  I+        R+ RE V RK+ +    LP
Sbjct: 360 VRGIVDTLVGEALGEFLEFNPSVIDLILEKAIQAFNAAEAARRARELVRRKSVLESSTLP 419

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILN+      KI  N
Sbjct: 420 GKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKN 479

Query: 511 QQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
            +I  L+ ALG   + +  +E  LRY +++IMTDADVDGAHI +L+LTFF++    L+E 
Sbjct: 480 TEIQALITALGLGIKGEDFDEKNLRYHRIVIMTDADVDGAHIRTLILTFFFRYQKALVEG 539

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
            ++++  PPL+++ +G    Y ++E   +K +E F +  K    I RFKGLGEM+  QL 
Sbjct: 540 GYIYIACPPLYKVERGKNHTYCYNEGDLKKTIESFGE--KANYTIQRFKGLGEMMPQQLW 597

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685
           ET MD   R + RVEI   L    +       LMG K   R +FI+  ++ +D   + 
Sbjct: 598 ETTMDPATRMMKRVEIEDAL----EADRIFTILMGDKVAPRREFIETHSAELDLAQLD 651


>gi|251794042|ref|YP_003008773.1| DNA gyrase subunit beta [Paenibacillus sp. JDR-2]
 gi|247541668|gb|ACS98686.1| DNA gyrase, B subunit [Paenibacillus sp. JDR-2]
          Length = 635

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 265/651 (40%), Positives = 384/651 (58%), Gaps = 22/651 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           S  + YD S I++LEGLE VR RPGMYIG T  K LHHL  EV+DN++DE +AGY   I+
Sbjct: 2   SQQNTYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEVVDNSIDEALAGYCTKIQ 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V +  +  +TV+DNGRGIPV  + K   KSTLE+++T LHAGGKF    Y++SGGLHGVG
Sbjct: 62  VRVHEDNSITVIDNGRGIPVGENAKL-KKSTLEVVMTVLHAGGKFGGEGYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+ + VTV     ++ Q++ RG+P   ++   +  ++ GT + F+PDP+IF D
Sbjct: 121 VSVVNALSEHVTVTVKLHGNVYQQEYRRGVPQYDVKIIGE-SDETGTTVKFKPDPEIFTD 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              ++   L    +  A+L+  ++     ++             F + GG+  +++    
Sbjct: 180 TTVYEYETLQSRIRELAFLNKGLEIELIDER-------TGTSNSFKYDGGIIEFVKHLNR 232

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N+ ++  E    +  K       VE ++ + +     I S+ N I T EGGTHESG + A
Sbjct: 233 NKEVMHEEPIYVEGSKDHIQ---VEVSLQYNDGYTENIHSFANNINTHEGGTHESGFKSA 289

Query: 338 LTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR I  YA  T   +    +   DD+      I+SV I EP+F GQTKTKL + + +  
Sbjct: 290 LTRIINDYARKTGLIKDNDSNFSGDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGI 349

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454
           VE+   +    +L +NP  + K++E  ++ +  R   RK RE   RK+A+    LPGKLA
Sbjct: 350 VESFFAEKLQEFLDENPSVSRKIVEKGLQAARAREAARKARELTRRKSALEVSSLPGKLA 409

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS   A  +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  ++I  N +I 
Sbjct: 410 DCSSKDASISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVERARLDRILGNAEIR 469

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++ ALG      +     RY KVIIMTDADVDGAHI +L+LTFF++ M  +IE  ++++
Sbjct: 470 AIITALGTGIGDDFDLAKARYHKVIIMTDADVDGAHIRTLMLTFFFRYMRKIIEAGYIYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPLF+I +     YA  E+ +++I+ EF +    K+ + R+KGLGEM A+QL ET MD
Sbjct: 530 AQPPLFKIERNKVIRYAQSEKEREEIIAEFGE--GAKVNVQRYKGLGEMNATQLWETTMD 587

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              RT+L+V I   +    +     + LMG   + R  FIQ+ A  + ++ 
Sbjct: 588 PESRTMLQVSIEDAI----EADVIFDTLMGDNVEPRRDFIQQFAKDVKNLD 634


>gi|126697571|ref|YP_001086468.1| DNA gyrase subunit B [Clostridium difficile 630]
 gi|254977347|ref|ZP_05273819.1| DNA gyrase subunit B [Clostridium difficile QCD-66c26]
 gi|255094677|ref|ZP_05324155.1| DNA gyrase subunit B [Clostridium difficile CIP 107932]
 gi|255102904|ref|ZP_05331881.1| DNA gyrase subunit B [Clostridium difficile QCD-63q42]
 gi|255308724|ref|ZP_05352895.1| DNA gyrase subunit B [Clostridium difficile ATCC 43255]
 gi|255316431|ref|ZP_05358014.1| DNA gyrase subunit B [Clostridium difficile QCD-76w55]
 gi|255519091|ref|ZP_05386767.1| DNA gyrase subunit B [Clostridium difficile QCD-97b34]
 gi|255652274|ref|ZP_05399176.1| DNA gyrase subunit B [Clostridium difficile QCD-37x79]
 gi|260681774|ref|YP_003213059.1| DNA gyrase subunit B [Clostridium difficile CD196]
 gi|306521988|ref|ZP_07408335.1| DNA gyrase, B subunit [Clostridium difficile QCD-32g58]
 gi|115249008|emb|CAJ66819.1| DNA gyrase subunit B [Clostridium difficile]
 gi|260207937|emb|CBA60049.1| DNA gyrase subunit B [Clostridium difficile CD196]
          Length = 633

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 258/648 (39%), Positives = 386/648 (59%), Gaps = 22/648 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y AS I++LEGLE VR RPGMYIG T  + LHHL  EV+DN++DE + GY + I VS+
Sbjct: 3   QEYGASQIQVLEGLEAVRKRPGMYIGSTSPRGLHHLVYEVVDNSIDEALQGYCSDIYVSI 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G + V DNGRGIPVE HPK   KSTLE +LT LHAGGKF    Y++SGGLHGVG+SV
Sbjct: 63  NEDGSVLVKDNGRGIPVEIHPK-TGKSTLETVLTNLHAGGKFGGGGYKVSGGLHGVGVSV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  +   V     I+ Q + +G+P S LE   + ++ +GT I F PD  IF +   
Sbjct: 122 VNALSKWMVAEVYLNGKIYKQTYEKGLPTSKLEVVGESQD-KGTMIQFMPDETIFDEI-E 179

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F    L    +  ++L+  +K  +   +E  EK        F++ GGL  Y++   ++R+
Sbjct: 180 FKYETLEYRLRELSFLNKGIKIVFEDKREGQEKRKE-----FHYTGGLVEYIKYLNKSRT 234

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I  +I       K      VE A+ + +     I S+ N I T EGG+H SG + ALT+
Sbjct: 235 GIHDDIVYI---DKKVDDCFVELAMQYTDGYTENIYSFANNINTHEGGSHLSGFKAALTK 291

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +  YA+  +   +  ++++ +D+      ++SV + EP+F GQTKTKL +   +  V++
Sbjct: 292 TVNDYAKRNKFLKENDVNLLGEDIREGLTAVVSVKLPEPQFEGQTKTKLGNSFMRGIVDS 351

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
              D    +L +NP  A  +++  +     R   +K RE   RK+ +    LPGKLADC+
Sbjct: 352 VTVDELGSFLEENPSTARIIVDKALRAQRAREAAKKARELTRRKSVLESTSLPGKLADCA 411

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           +     +E+F+VEGDSAGGSAKQ R+R++QA+LPLRGKILNV  +  ++I ++ +I +++
Sbjct: 412 EKDPSKSEIFLVEGDSAGGSAKQGRDRNSQAILPLRGKILNVEKSRLDRILSSDEIKNMI 471

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A GC     +  +  RY K+IIMTDADVDGAHI +LLLTFF++ M  LI++ +++   P
Sbjct: 472 TAYGCGIGEDFDIDKARYHKIIIMTDADVDGAHIRTLLLTFFFRYMRPLIDEGYVYAAQP 531

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+++T+  K  Y + ++    +L+E  ++G   +E+ R+KGLGEM A QL ET M+   
Sbjct: 532 PLYKVTKQKKEHYVYSDKELNILLDEIGRNG---VELQRYKGLGEMNAEQLWETTMNPET 588

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           RTLL+V +           +  + LMG K   R +FI+E A F+ ++ 
Sbjct: 589 RTLLQVTVED----AAIADEVFSMLMGDKVAPRKEFIEENARFVRNLD 632


>gi|323141431|ref|ZP_08076321.1| DNA gyrase, B subunit [Phascolarctobacterium sp. YIT 12067]
 gi|322414087|gb|EFY04916.1| DNA gyrase, B subunit [Phascolarctobacterium sp. YIT 12067]
          Length = 646

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 251/662 (37%), Positives = 372/662 (56%), Gaps = 23/662 (3%)

Query: 29  IPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDE 88
             D       +   NY+A  I +LEGLE VR RP MYIG T  + LHHL  EV+DN++DE
Sbjct: 2   TQDIDIEEATAVKGNYNAEQIHVLEGLEAVRKRPAMYIGSTSSRGLHHLVYEVVDNSIDE 61

Query: 89  VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148
            +AGY + I+V +  +  +TV+DNGRGIPV+   K   K  +E+I+T LHAGGKF +  Y
Sbjct: 62  ALAGYCSDIKVIIHKDNSITVIDNGRGIPVDMMKK-EQKPAVEVIMTVLHAGGKFGDGGY 120

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG++ VNALS+ + V V R    +  +F++G     L +K       GT + 
Sbjct: 121 KVSGGLHGVGVTCVNALSEHMEVEVRRGGKCYGIEFAKGKTSKKLYEKGDC-ETTGTTVH 179

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F+PD  IF +   +    L    +  A+L+  +    + ++         + E F+F GG
Sbjct: 180 FKPDATIFTE-TEYSYDTLRLRIRELAFLNKGITISLTDER------AEDKSETFHFAGG 232

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           +  Y++   +++  I+ +    + EK       VE A+ +C+     I +Y N I T+EG
Sbjct: 233 IIEYVEFMDKDKDKINPKPIYLEGEKNAVI---VEVAMQYCDTYSENIFTYVNNINTEEG 289

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH SG R ALTR I  YA  T   +        DD+      +LS+ ++ P+F  QTK 
Sbjct: 290 GTHLSGFRKALTRTINAYARKTNMLKENEDALSGDDVREGLTAVLSLKVQNPQFESQTKI 349

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAI 444
           KL + +    V+N + D    ++ +NP  A KL+ + ++        R+ +    RK A+
Sbjct: 350 KLGNSEVMPIVDNLVGDTLAEFMEENPQVAKKLVEKAIVAARARLAARKARELTRRKNAM 409

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC       TE+++VEGDSAGGSAKQ RN   QA+LPLRGKILNV  A  
Sbjct: 410 DLGGLPGKLADCKSRNVEDTEIYLVEGDSAGGSAKQGRNSDFQAILPLRGKILNVEKARL 469

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           +K+ ++++I +++ A GC     +  E  RY K+IIMTDADVDGAHI +LLLTFFY+ M 
Sbjct: 470 DKVLSSEEIRNMITAFGCGIGDDFNLEKARYGKIIIMTDADVDGAHIRTLLLTFFYRYMQ 529

Query: 565 DLIEQKHLFLISPPLFRITQG-TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
            LI++ H+F+  PPL+ I +   +  YA+ +E  Q+IL+E  +       + R+KGLGEM
Sbjct: 530 PLIKEGHVFIAQPPLYLIRKNQKQHYYAYSDEELQEILDEVGRDANPY--VQRYKGLGEM 587

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
              QL ET MD   RT+L+V +        +     + LMG K + R +FI++ A  + +
Sbjct: 588 NPGQLWETTMDPAARTILQVHLED----AAEADRIFSILMGDKVEPRRQFIEDNAKKVRN 643

Query: 684 VG 685
           + 
Sbjct: 644 LD 645


>gi|163755890|ref|ZP_02163007.1| DNA gyrase, B subunit [Kordia algicida OT-1]
 gi|161324061|gb|EDP95393.1| DNA gyrase, B subunit [Kordia algicida OT-1]
          Length = 645

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 263/659 (39%), Positives = 386/659 (58%), Gaps = 24/659 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           ++   + Y A+SI+ LEG+E VRMRP MYIG    + LHHL  EV+DN++DE +AG+ + 
Sbjct: 2   SEENKNQYSAASIQALEGMEHVRMRPSMYIGDVGVRGLHHLVYEVVDNSIDEALAGHCDT 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V ++ +  +T  DNGRGIPV  H K    S LE+++T + AGGKFD  +Y++SGGLHG
Sbjct: 62  ISVIINEDNSITTEDNGRGIPVGIHEK-KGVSALEVVMTEIGAGGKFDKDSYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+S VNALSD L  TV R   I+ Q++ RG  L P++      +KRGT +TF+PD  IF
Sbjct: 121 VGVSCVNALSDHLRATVYRDGKIWEQEYERGKALYPVKAIGD-SDKRGTVVTFKPDASIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                ++   L    +  +YL+  +    +  +   EK      E F+   GLK +++  
Sbjct: 180 TQTLEYNYETLANRMRELSYLNKGITITLTDKRNKDEKG-EYIGEVFHSQEGLKEFIKYL 238

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLR 335
             NR  I +++   + EK G     VE A+ +     E    Y N I T EGGTH SG R
Sbjct: 239 DGNREQIIADVVAFEGEKNGIP---VEVAMTYNTSYSENLHSYVNNINTHEGGTHLSGFR 295

Query: 336 VALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
             LT  +KKYAE T    K    I  DD       I+SV + EP+F GQTKTKL + +  
Sbjct: 296 RGLTHTLKKYAEGTGMLDKLKFDISGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVS 355

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGK 452
            +V  A+ +    YL ++P +A  +++ V+  ++ R   +K RE+  RKT +    LPGK
Sbjct: 356 ASVSQAVSEMLTDYLEEHPDDAKTIVQKVVLAAQARHAAQKAREMVQRKTVMSIGGLPGK 415

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV  A   K+  N++
Sbjct: 416 LSDCSEQDPAKCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFENEE 475

Query: 513 IMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
           I ++  ALG    ++   +      LRY K++IM DADVDG+HIA+L+LTFF++ M +LI
Sbjct: 476 IKNIFTALGVTIGTEEDSKALNLSKLRYHKIVIMCDADVDGSHIATLILTFFFRYMKELI 535

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           E  H+++ +PPL+ + +G K  YA ++E +  I+EEF +       I R+KGLGEM A Q
Sbjct: 536 ENGHIYIAAPPLYLVKKGAKRRYAWNDEERDAIIEEFGQGA----NIQRYKGLGEMNAEQ 591

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           L +T M+ + RTL +V I+       +     + LMG +   R +FI++ A +  ++  
Sbjct: 592 LWDTTMNPDFRTLRQVMIDNGG----EADRVFSMLMGDEVPPRREFIEKNAVYA-NIDA 645


>gi|295702247|ref|YP_003595322.1| DNA gyrase subunit B [Bacillus megaterium DSM 319]
 gi|294799906|gb|ADF36972.1| DNA gyrase, B subunit [Bacillus megaterium DSM 319]
          Length = 638

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 257/648 (39%), Positives = 380/648 (58%), Gaps = 21/648 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y+A  I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I V +
Sbjct: 7   QAYEADQIQVLEGLEAVRKRPGMYIGSTSAKGLHHLVWEIVDNSIDEALAGYCDEINVII 66

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +  +TV DNGRGIPV    K   +  +E+ILT LHAGGKF    Y++SGGLHGVG SV
Sbjct: 67  EKDNSITVKDNGRGIPVGIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGASV 125

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  L V V R   +  QK+ RG+P + L+   +  +K GT I F PD +IF +   
Sbjct: 126 VNALSTSLEVYVHRDGKVHYQKYERGVPAADLKVVGET-DKTGTVIQFHPDGEIFTETLE 184

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +D   L    +  A+L+  +K      +E        ++ E+++ GG+K+Y++     + 
Sbjct: 185 YDFDTLANRLRELAFLNRGIKITIEDKRE------EDKRREYHYEGGIKSYVEHLNRAKE 238

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALTR 340
           +I  E    +  +      +VE AI + +        + N I T EGGTHE+G + ALTR
Sbjct: 239 VIHEEPIYIEGNRDNI---SVEIAIQYNDSYTSNLYSFANNIHTYEGGTHEAGFKTALTR 295

Query: 341 GIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  YA           ++  +D+      I+S+   +P+F GQTKTKL + +A+   ++
Sbjct: 296 VINDYARKNSVFKDSDANLTGEDVREGITAIISIKHPDPQFEGQTKTKLGNSEARTITDS 355

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCS 457
              +  + YL++NPI A K++E  +  +  R+  +K      RK+A+    LPGKLADCS
Sbjct: 356 VFAEHLETYLLENPIVAKKVIEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCS 415

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +EL++VEGDSAGGSAKQ R+R  QA+LPLRGKI+NV  A  +KI +N +I  ++
Sbjct: 416 SKDPSISELYVVEGDSAGGSAKQGRSRHFQAILPLRGKIINVEKARLDKILSNNEIRTII 475

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG      +     RY K++IMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  P
Sbjct: 476 TALGTGIGDDFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYVYIAQP 535

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL++++QG K  YA+++   +++L  F +    K  + R+KGLGEM   QL ET MD   
Sbjct: 536 PLYKVSQGKKVEYAYNDRQLEEVLASFPE--GAKPNLQRYKGLGEMNPEQLWETTMDPEF 593

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           RTLL+V +   +    +  ++   LMG K + R  FI+E A ++ ++ 
Sbjct: 594 RTLLQVNLQDAI----EADETFEILMGDKVEPRRNFIEENAQYVKNLD 637


>gi|229065153|ref|ZP_04200446.1| DNA gyrase subunit B [Bacillus cereus AH603]
 gi|228716182|gb|EEL67901.1| DNA gyrase subunit B [Bacillus cereus AH603]
          Length = 640

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 261/654 (39%), Positives = 380/654 (58%), Gaps = 21/654 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
             Q   + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY +
Sbjct: 3   QKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I VS++ +  + V D+GRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLH
Sbjct: 63  EINVSIEEDNSIVVTDDGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS EL V V R   I  QK+ RG+P + L+   +  ++ GT   F+PD +I
Sbjct: 122 GVGASVVNALSTELEVFVHRDGKIHYQKYERGVPAADLKVIGET-DRTGTITRFKPDSEI 180

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++ 
Sbjct: 181 FTETTEYEFDTLATRMRELAFLNRNIKLIIEDKREHKQK------KEFHYEGGIKSYVEH 234

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
              ++  I  E       K G     VE A+ + E       S+ N I T EGGTHE G 
Sbjct: 235 LNRSKQPIHEEPVYVDGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGF 291

Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           + ALTR I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A
Sbjct: 292 KTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           +   E+   + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPG
Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPG 411

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N 
Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++  ++ A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  +
Sbjct: 472 EVRTIITAIGTNIGGDFAIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 531

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPLF++ QG K  YA++ +  +KIL E     K    I R+KGLGEM  +QL ET
Sbjct: 532 IYIAQPPLFKVQQGKKIQYAYNNKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 589

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639


>gi|145577989|gb|ABP82713.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           weihenstephanensis]
 gi|145578003|gb|ABP82720.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar vazensis]
 gi|145578011|gb|ABP82724.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           weihenstephanensis]
          Length = 632

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 260/649 (40%), Positives = 379/649 (58%), Gaps = 21/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V D+GRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSIVVTDDGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R   I  QK+ RG+P + L+   +  ++ GT   F+PD +IF +  
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGVPAADLKVIGET-DRTGTITRFKPDSEIFTETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E       K G     VE A+ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVDGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFAIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF++ QG K  YA++ +  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKVQQGKKIQYAYNNKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632


>gi|150396283|ref|YP_001326750.1| DNA topoisomerase IV subunit B [Sinorhizobium medicae WSM419]
 gi|150027798|gb|ABR59915.1| DNA topoisomerase IV, B subunit [Sinorhizobium medicae WSM419]
          Length = 686

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 436/688 (63%), Positives = 538/688 (78%), Gaps = 9/688 (1%)

Query: 3   DDSIDLFSTLPPQSQGSSEKLKKSGEI----PDSPAFANQSASDNYDASSIRILEGLEPV 58
           DDS DLFS +P Q + +    +K                 S   +YDAS+I +LEGLEPV
Sbjct: 2   DDSSDLFSAMPQQPKPADAAPRKPAAAAAGNEAPRPAPRTSDGSDYDASAIEVLEGLEPV 61

Query: 59  RMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPV 118
           R RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+AN I+V+LD +GFLTV DNGRGIPV
Sbjct: 62  RRRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHANFIDVNLDADGFLTVTDNGRGIPV 121

Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178
           ENHPKFP KSTLE+++T LHAGGKFD   YE SGGLHGVG+SVVNALSD+L V VAR   
Sbjct: 122 ENHPKFPGKSTLEVVMTVLHAGGKFDGKAYETSGGLHGVGVSVVNALSDDLEVEVARNRR 181

Query: 179 IFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLS 238
           ++ Q+FSRG+    LE    V N+RGTR+ F PDP+IFG  A F+ ARL +M +SKAYL 
Sbjct: 182 LYRQRFSRGVAQGGLEDLGDVHNRRGTRVRFHPDPQIFGPHARFEPARLFRMARSKAYLF 241

Query: 239 GRVKTCWSCDKE-IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           G V+  WSCD   + E   IP++  F+FPGGLK YL   L     ++ EIF GK+EK   
Sbjct: 242 GGVEIRWSCDPSLLPEGSEIPDRAVFHFPGGLKDYLAATLGKEFTVTREIFAGKSEKSNG 301

Query: 298 HRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI 357
           H G++EWA+ W   + +I SYCNTI T EGGTHE+GLR+ALT+G+K YAELTQNKRA  +
Sbjct: 302 H-GSLEWAVTWYGGDQQIHSYCNTIPTPEGGTHEAGLRIALTKGLKNYAELTQNKRAAIV 360

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
            +DD+MISA G+LSVFIREPEF GQTK +L +++AQR VENALRDPFDHYL  NP EA K
Sbjct: 361 TTDDVMISAAGMLSVFIREPEFVGQTKDRLATVEAQRIVENALRDPFDHYLADNPAEAAK 420

Query: 418 LLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           LL+WV+ER+EER+RRRK++EV+RKTA+RKLRLPGKLADC+QN A G ELFIVEGDSAGGS
Sbjct: 421 LLDWVVERAEERVRRRKEKEVSRKTAVRKLRLPGKLADCAQNTAEGAELFIVEGDSAGGS 480

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AKQARNR+NQA+LPLRGKILNVASAG EK+  NQQI DL+QALGC TRS+YREEDLRYE+
Sbjct: 481 AKQARNRANQAILPLRGKILNVASAGREKLGANQQIGDLIQALGCGTRSKYREEDLRYER 540

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           ++IMTDADVDGAHIASLL+TFFYQEM +LI   HLFL  PPL+R++QG+K++YA D+ H+
Sbjct: 541 IVIMTDADVDGAHIASLLITFFYQEMPELIRGGHLFLAVPPLYRLSQGSKTLYARDDAHR 600

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           +++++  +  G+GK+EI RFKGLGEML +QLKET MD  KRTLL+VEI+      + T+D
Sbjct: 601 EELMQT-EFSGRGKVEIGRFKGLGEMLPAQLKETTMDPAKRTLLKVEIDDV--DFEGTRD 657

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
           +++ LMGTKA+ RF+FIQERA F +++ 
Sbjct: 658 AVDSLMGTKAEARFRFIQERAVFAENLD 685


>gi|56961788|ref|YP_173510.1| DNA gyrase subunit B [Bacillus clausii KSM-K16]
 gi|56908022|dbj|BAD62549.1| DNA gyrase subunit B [Bacillus clausii KSM-K16]
          Length = 641

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 259/649 (39%), Positives = 375/649 (57%), Gaps = 21/649 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             YD S I++LEGLE VR RPGMYIG T ++ LHHL  E++DN++DE +AG+ + I+V++
Sbjct: 8   QTYDESQIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVWEIVDNSIDEAMAGFCDEIKVTI 67

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           +    LTV DNGRGIPV    K   +  +E+I+TTLHAGGKF    Y++SGGLHGVG SV
Sbjct: 68  EEGNALTVEDNGRGIPVGIQEKM-GRPAVEVIMTTLHAGGKFGGGGYKVSGGLHGVGASV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  L V V     I SQ +SRG+P + L    +  +K GT ITF+PDP+IF +   
Sbjct: 127 VNALSTHLTVNVHLDGKIHSQSYSRGVPDADLTVIGET-DKTGTTITFQPDPEIFRETVE 185

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L    +  A+L+  +       +    K        +++ GG+ ++++    ++ 
Sbjct: 186 FDYETLAARIRELAFLNKGLTIKIEDKRTEDGKKAT-----YHYEGGISSFVKHLNRSKE 240

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            +  E    ++EK G    +VE A+ + +     I S+ N I T EGGTHESG +  LTR
Sbjct: 241 TLHEEPIYVESEKDGI---SVEVAVQYNDGFTSSIYSFANNINTHEGGTHESGFKTGLTR 297

Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  YA      +    ++  +D+      I+SV I EP+F GQTKTKL + +A+   ++
Sbjct: 298 VINDYARKNGLFKENDPNLSGEDVREGLTAIISVKIPEPQFEGQTKTKLGNSEARTITDS 357

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
              + F  +L +NP  A K+++  +  S  R   +K RE   RK+A+    LPGKL DC+
Sbjct: 358 LFSESFARFLSENPGVARKIVDKGLMASRAREAAKKARELTRRKSALEVSSLPGKLTDCT 417

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
              A  +ELFIVEGDSAGGSAK  R+   QA+LPLRGKILNV  A  +KI  N +I  ++
Sbjct: 418 SKDASISELFIVEGDSAGGSAKGGRDPHFQAILPLRGKILNVEKARLDKILANNEIRMII 477

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G     ++     RY K++IMTDADVDGAHI +L+LTFFY+ M +L+E  ++++  P
Sbjct: 478 TAIGTGIGDEFDISKARYHKIVIMTDADVDGAHIRTLILTFFYRYMRELLENGYVYIAQP 537

Query: 578 PLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PL++I QG     Y + +      L       + K+ + R+KGLGEM A QL ET MD  
Sbjct: 538 PLYKIEQGKNNVTYVYSDRELDAHLATVA--DRSKVSVQRYKGLGEMNAGQLWETTMDPQ 595

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            R +L+V +   +       +    LMG + + R  FIQE A ++ ++ 
Sbjct: 596 VRNMLQVTLADAIK----ADEIFEILMGDRVEPRRDFIQENAHYVKNLD 640


>gi|154483927|ref|ZP_02026375.1| hypothetical protein EUBVEN_01633 [Eubacterium ventriosum ATCC
           27560]
 gi|149735418|gb|EDM51304.1| hypothetical protein EUBVEN_01633 [Eubacterium ventriosum ATCC
           27560]
          Length = 643

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 261/655 (39%), Positives = 375/655 (57%), Gaps = 18/655 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
             N +  + Y A  I++LEGLE VR RPGMYIG T  + LHHL  E++DNA+DE +AGY 
Sbjct: 2   GNNTNVENEYGADQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNAVDEALAGYC 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I+V ++ +  +TV D+GRGIP + + K   K  +E++ T LHAGGKF    Y++SGGL
Sbjct: 62  DTIDVQINEDNSITVRDDGRGIPTDINTK-TGKPAVEVVFTVLHAGGKFGGGGYKVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213
           HGVG SVVNALS  L V V R   +  QK+  G  + PL        +  GT + F PD 
Sbjct: 121 HGVGASVVNALSKWLEVKVCRGGKVHYQKYEYGKVVEPLTVIGDCNPDFTGTEVKFLPDD 180

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF D   +D   L    +  A+L+  +K      +E       P ++ F++ GG+K ++
Sbjct: 181 TIFEDTV-YDYKTLEIRLRETAFLTKNLKIVLRDVREEK-----PIEKTFHYEGGIKEFV 234

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
               + +  +  ++   +      +   VE A+   +       S+ N I T EGGT   
Sbjct: 235 NYLNKGKQELYDDVIYCEGTVNNVY---VEVAMQHNDAYTENTLSFVNNINTPEGGTQVE 291

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G + A+T+    YA+  +   +   ++  DD       I+SV I +P+F GQTK KL + 
Sbjct: 292 GFKRAITKTFNNYAKQNKILKENEENLSGDDFREGLTAIISVKIEDPQFEGQTKQKLGNS 351

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
           +A+  VE  + +   +YL QNP  A  + E  +     R   RK RE  RKTA+    LP
Sbjct: 352 EARAAVEGVMSEQLTYYLEQNPAIAKIICEKAVLAKRARDAARKAREATRKTALSVAALP 411

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS       E+FIVEGDSAGGSAK+AR R+ QA+LPLRGKILNV  A  +KI +N
Sbjct: 412 GKLADCSDKNPENCEIFIVEGDSAGGSAKKARTRATQAILPLRGKILNVEKARIDKIMDN 471

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
            +I  ++ A G   +  +    LRY K+IIMTDADVDGAHI +L+LTFFY+ M +LI+  
Sbjct: 472 AEIRTMITAFGTGIQEDFDITKLRYNKIIIMTDADVDGAHIDTLMLTFFYRFMPELIKDG 531

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           H++L  PPL+++T+  K+ YA+ ++   +IL E  +  + K  I R+KGLGEM ASQL E
Sbjct: 532 HVYLAMPPLYQVTRNKKNYYAYSDDELNQILTEIGRDNQNK--IQRYKGLGEMDASQLWE 589

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T MD N R L +V+I++D   L +   +   LMG   + R +FI+  A F+ ++ 
Sbjct: 590 TTMDPNTRILKQVKIDEDK--LSEMDQTFTILMGDDVEPRREFIEANAKFVKNLD 642


>gi|154503045|ref|ZP_02040105.1| hypothetical protein RUMGNA_00867 [Ruminococcus gnavus ATCC 29149]
 gi|153796286|gb|EDN78706.1| hypothetical protein RUMGNA_00867 [Ruminococcus gnavus ATCC 29149]
          Length = 645

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 262/648 (40%), Positives = 379/648 (58%), Gaps = 19/648 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y A  I+ILEGLE VR RPGMYIG T  + LHHL  E++DNA+DE +AGY + I VS++
Sbjct: 11  EYGADQIQILEGLEAVRKRPGMYIGSTSARGLHHLVYEIVDNAVDEALAGYCDTINVSIN 70

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TVVDNGRGIPV  + K      +E++ T LHAGGKF    Y++SGGLHGVG SVV
Sbjct: 71  PDNSVTVVDNGRGIPVGLNHKA-GIPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGASVV 129

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221
           NALS  L V +  +  I+ Q++ RG  +  L+   +   +K GT++TF PD +IF +   
Sbjct: 130 NALSVWLEVEIYNEGKIYKQRYERGKTMYSLKVVGECDPDKTGTKVTFLPDGEIFEETV- 188

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F+   L +  +  A+L+  +K      +E   +        F++ GG+K ++    ++++
Sbjct: 189 FEYDVLKQRLREMAFLTKGLKIILQDLREEEIREHT-----FHYEGGIKEFVTYLNKSKT 243

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALTR 340
            +  +I   + EK G     VE A+   +   + T  + N I T EGGTH  G R ALT+
Sbjct: 244 PLYDQIIYCEGEKDGV---VVEMAMQHNDSYSDNTYGFVNNITTPEGGTHIEGFRKALTK 300

Query: 341 GIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
              +YA   +  +    ++  DD+      I+SV I EP+F GQTK KL + +A+  V+N
Sbjct: 301 TFNEYARKNKLLKDNEPNLSGDDIREGLTAIVSVKIGEPQFEGQTKQKLGNSEARGAVDN 360

Query: 399 ALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
            +    + +L QNP  A + +E  ++ +      R+ +    RK+A+  + LPGKLADCS
Sbjct: 361 IVSTQLEIFLEQNPSVAKQTVEKSLMAQRAREAARKARDLTRRKSALEGMSLPGKLADCS 420

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                  E++IVEGDSAGGSAK AR R+ QA+LPLRGKILNV  A  +KI  N +I  ++
Sbjct: 421 DKNPENCEIYIVEGDSAGGSAKTARQRATQAILPLRGKILNVEKARLDKIYANAEIKAMI 480

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A G      +    LRY K+IIMTDADVDGAHI++LLLTF Y+ M DLI + +++L  P
Sbjct: 481 TAFGTGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIREGYVYLAQP 540

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+++ +  K  YA+ +E   +IL E  +    K  I R+KGLGEM A QL ET MD   
Sbjct: 541 PLYKLEKNKKVWYAYSDEELNEILTEVGRDSNNK--IQRYKGLGEMDADQLWETTMDPEH 598

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           R LLRV ++    +  +   +   LMG K + R +FI+E A F+ ++ 
Sbjct: 599 RVLLRVTMDD--ETSSELDLTFTTLMGDKVEPRREFIEENARFVKNLD 644


>gi|225570329|ref|ZP_03779354.1| hypothetical protein CLOHYLEM_06426 [Clostridium hylemonae DSM
           15053]
 gi|225160861|gb|EEG73480.1| hypothetical protein CLOHYLEM_06426 [Clostridium hylemonae DSM
           15053]
          Length = 644

 Score =  632 bits (1629), Expect = e-179,   Method: Composition-based stats.
 Identities = 256/656 (39%), Positives = 378/656 (57%), Gaps = 18/656 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +     Y A  I+ILEGLE VR RPGMYIG T  + LHHL  E++DNA+DE +AG+ 
Sbjct: 1   MSTEKVQHEYGADEIQILEGLEAVRKRPGMYIGSTSARGLHHLVYEIVDNAVDEALAGFC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I V+++ +  +TVVDNGRGIPV  + K      +E++ T LHAGGKF    Y++SGGL
Sbjct: 61  DTIYVTINQDNSVTVVDNGRGIPVGINSKA-GLPAVEVVFTILHAGGKFGGGGYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213
           HGVG SVVNALS+ L V +  +  ++ Q++ RG     L    +   +K GT++TF PD 
Sbjct: 120 HGVGASVVNALSNWLEVEIYSEGKVYMQRYERGKVAKKLAVIGECGSDKTGTKVTFLPDD 179

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF +   F+   L +  +  A+L+  +K     D+   E    P ++ F++ GG+K ++
Sbjct: 180 TIFEETV-FEYDVLKQRFREMAFLTKGLKIVLRDDRPEDE----PVEKTFHYEGGIKQFV 234

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHES 332
           +    +++ +   I   +      +   VE A+   +   + T  + N I T EGGTH  
Sbjct: 235 EYLNRSKTPLYESIIYCEG---LVNNVAVEVAMQHNDSYSDNTYGFVNNITTPEGGTHIV 291

Query: 333 GLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALT+    YA   +  +    ++  +D+      I+SV I +P+F GQTK KL + 
Sbjct: 292 GFRNALTKTFNDYARKNKLLKDSEPNLSGEDIREGLTAIISVKIEDPQFEGQTKQKLGNS 351

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRL 449
           +A+  V++ +    + +L QNP  A   +E  V+ +      R+ +    RK+A+  + L
Sbjct: 352 EARGAVDSVVSSQLEIFLEQNPSVAKMTVEKSVMAQRAREAARKARDLTRRKSALDSMSL 411

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADCS       E++IVEGDSAGGSAK AR+R  QA+LPLRGKILNV  A  +KI  
Sbjct: 412 PGKLADCSDKDPKNCEIYIVEGDSAGGSAKTARDRGTQAILPLRGKILNVEKARLDKIYA 471

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N +I  ++ A G      +    LRY K+IIMTDADVDGAHI++LLLTF Y+ M DLI++
Sbjct: 472 NAEIKAMITAFGTGIHDDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKE 531

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
            +++L  PPL+++ +  K  YA+ +E    IL E  + G  K  I R+KGLGEM A QL 
Sbjct: 532 GYVYLAQPPLYKLEKNKKVWYAYSDEELDTILREVGRDGSNK--IQRYKGLGEMDAGQLW 589

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           ET MD   R LLRV ++    +  +   +   LMG K + R +FI+E A ++ ++ 
Sbjct: 590 ETTMDPEHRILLRVTMDD--ETTSELDLTFTTLMGDKVEPRREFIEENAKYVQNLD 643


>gi|160946608|ref|ZP_02093811.1| hypothetical protein PEPMIC_00566 [Parvimonas micra ATCC 33270]
 gi|158446992|gb|EDP23987.1| hypothetical protein PEPMIC_00566 [Parvimonas micra ATCC 33270]
          Length = 638

 Score =  632 bits (1629), Expect = e-179,   Method: Composition-based stats.
 Identities = 255/655 (38%), Positives = 383/655 (58%), Gaps = 23/655 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           ++    NY A  IR+L GLEPVR+RPGMYIG T  K LHHL  EV+DN++DE +AG  + 
Sbjct: 2   SKEKIRNYGAKDIRVLTGLEPVRLRPGMYIGSTGVKGLHHLVYEVVDNSIDEALAGVCDT 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V++  +  + V DNG GIPVE HP+   KSTLE +LT LHAGGKF+N+ Y++SGGLHG
Sbjct: 62  ITVTIFEDNSVRVEDNGSGIPVEVHPQ-TGKSTLETVLTILHAGGKFNNNAYQVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+SVVNALS+ L   V R   ++ Q+FSRG   S LE       + GT ITF+PD +IF
Sbjct: 121 VGVSVVNALSEWLIANVKRDGKLYEQQFSRGNTTSKLEVVG-TSKETGTIITFKPDSEIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                ++   L    +  A+L+  VK  ++ ++E          E F++ GG+K++++  
Sbjct: 180 DTTI-YEKEILRNRFREMAFLNKGVKIIFTDERE-------DFTETFHYEGGIKSFVEYM 231

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335
             N++ + +E+   + ++  +    VE ++ + +   E   ++ N I T EGG+H  G R
Sbjct: 232 NRNKNNLHNEVIYFQGQRGDSQ---VEISMQYTDGYSENVLTFANNIHTPEGGSHLVGFR 288

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR +  Y         +  ++  DD      GI+S+ +  P+F GQTK KL + +++
Sbjct: 289 TALTRTLNDYGRKYNLIKDKDANLQGDDTREGLTGIVSIKLPNPQFEGQTKAKLGNSESR 348

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
             VE  L D    +L +NP     ++E     +  R   RK R+   +K+ +    LPGK
Sbjct: 349 GIVETFLYDNLMTFLEENPKVGKIIIEKAQSSARAREAARKARDLTRKKSILDNTTLPGK 408

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L+DC ++     E+++VEGDSAGGSAKQ R+   QAVLPL+GKI+NV  A  +KI   ++
Sbjct: 409 LSDCQESDISVNEIYLVEGDSAGGSAKQGRDSKFQAVLPLKGKIMNVEKARIDKILGYEE 468

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++ A G      +  ++LRY K++IMTDADVDGAHI +L+LTFFY+ M +LIEQ H+
Sbjct: 469 IKSMITAFGTGIGKDFNLDNLRYGKIVIMTDADVDGAHIRTLILTFFYRYMKELIEQGHV 528

Query: 573 FLISPPLFRITQG-TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           ++  PPL+ I +G     Y   +E  Q  L+E  +       I R+KGLGEM  +QL ET
Sbjct: 529 YIAQPPLYGIIKGVKVVKYCWTDEELQASLDELGRDSHR---IQRYKGLGEMNPAQLWET 585

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
            M+   R  L+V I+     L    ++ + LMG K + R +FI++ A +++++  
Sbjct: 586 TMNPENRLFLQVNIDD--EELVSIDETFSTLMGDKVEPRREFIEQNAKYVENIDA 638


>gi|163938018|ref|YP_001642902.1| DNA gyrase subunit B [Bacillus weihenstephanensis KBAB4]
 gi|229136319|ref|ZP_04265066.1| DNA gyrase subunit B [Bacillus cereus BDRD-ST196]
 gi|163860215|gb|ABY41274.1| DNA gyrase, B subunit [Bacillus weihenstephanensis KBAB4]
 gi|228647191|gb|EEL03279.1| DNA gyrase subunit B [Bacillus cereus BDRD-ST196]
          Length = 640

 Score =  632 bits (1629), Expect = e-179,   Method: Composition-based stats.
 Identities = 261/654 (39%), Positives = 380/654 (58%), Gaps = 21/654 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
             Q   + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY +
Sbjct: 3   QKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I VS++ +  + V D+GRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLH
Sbjct: 63  EINVSIEEDNSIVVTDDGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS EL V V R   I  QK+ RG+P + L+   +  ++ GT   F+PD +I
Sbjct: 122 GVGASVVNALSTELEVFVHRDGKIHYQKYERGVPAADLKVIGET-DRTGTITRFKPDSEI 180

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++ 
Sbjct: 181 FTETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 234

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
              ++  I  E       K G     VE A+ + E       S+ N I T EGGTHE G 
Sbjct: 235 LNRSKQPIHEEPVYVDGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGF 291

Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           + ALTR I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A
Sbjct: 292 KTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           +   E+   + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPG
Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPG 411

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N 
Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++  ++ A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  +
Sbjct: 472 EVRTIITAIGTNIGGDFAIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 531

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPLF++ QG K  YA++ +  +KIL E     K    I R+KGLGEM  +QL ET
Sbjct: 532 IYIAQPPLFKVQQGKKIQYAYNNKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 589

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639


>gi|257452986|ref|ZP_05618285.1| DNA gyrase subunit B [Fusobacterium sp. 3_1_5R]
 gi|257466634|ref|ZP_05630945.1| DNA gyrase subunit B [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917788|ref|ZP_07914028.1| DNA gyrase subunit B [Fusobacterium gonidiaformans ATCC 25563]
 gi|317059526|ref|ZP_07924011.1| DNA gyrase subunit B [Fusobacterium sp. 3_1_5R]
 gi|313685202|gb|EFS22037.1| DNA gyrase subunit B [Fusobacterium sp. 3_1_5R]
 gi|313691663|gb|EFS28498.1| DNA gyrase subunit B [Fusobacterium gonidiaformans ATCC 25563]
          Length = 638

 Score =  632 bits (1629), Expect = e-179,   Method: Composition-based stats.
 Identities = 257/651 (39%), Positives = 379/651 (58%), Gaps = 22/651 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY A +I +LEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AGY N I VS+
Sbjct: 2   NNYGAQNITVLEGLEAVRKRPGMYIGTTSARGLHHLVWEVVDNSVDEALAGYCNTITVSI 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  + V DNGRGIPV+ HPK+  KS LEI+LT LHAGGKF+N  Y++SGGLHGVGISV
Sbjct: 62  LPDNIIQVEDNGRGIPVDIHPKY-GKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGISV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDPKIFGDK 219
           VNALS+   + V R   ++ QK+ RG P+  ++     +  +  GT +TF+PD +IF   
Sbjct: 121 VNALSEWTEIKVKRDGNVYYQKYLRGKPIEDVKIISSLEAGDTTGTTVTFKPDAEIFETV 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L    +  AYL+  ++      +       I +KE+F F GG+  +L+     
Sbjct: 181 I-FEYEVLQHRLKELAYLNRGLEINLLDCR-----NEIGKKEKFQFEGGISDFLKEVTHE 234

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLRVAL 338
             ++ S+    + + +   +  V+ A  +   ++  I S+ N I T EGGTH +G R  L
Sbjct: 235 NQVLLSKQIHVEGQAE---QVGVDIAFTYTTSQSETIYSFVNNINTTEGGTHVTGFRTCL 291

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           T+ I    +      ++   +   D+    V I+SV + +P+F GQTKTKL + +    V
Sbjct: 292 TKVINDIGKSQGFLKEKDGKLQGGDIREGIVAIISVKVPQPQFEGQTKTKLGNSEVSGIV 351

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLAD 455
            + L      +L  NP +   ++E ++   + R   ++ RE   + + +    LPGKLAD
Sbjct: 352 NSVLSVDLKIFLEDNPNDTKLIIEKILNSKKAREAAQRAREAVLRKSVLEVGSLPGKLAD 411

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS   +   E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  AG  K   +++I  
Sbjct: 412 CSSKKSEECEIFLVEGDSAGGSAKQGRDRYFQAILPLKGKILNVEKAGLHKALESEEIRA 471

Query: 516 LVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           +V A G     +  +   LRY K+I+MTDADVDGAHI +L+LTF Y+ M DLI   ++++
Sbjct: 472 MVTAFGTNIGEESFDLNKLRYGKIILMTDADVDGAHIRTLILTFLYRYMVDLIHNGNVYI 531

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL++I+ G    YA+ +   ++IL+  +   K K  + R+KGLGEM   QL ET MD
Sbjct: 532 AQPPLYKISFGKSIRYAYTDAQLKEILQSVEGENK-KYTLQRYKGLGEMNPEQLWETTMD 590

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              R LL+V I+    + ++     +KLMG K + R +FIQE A +  ++ 
Sbjct: 591 PEARLLLKVSID----NAREADMLFDKLMGDKVEPRREFIQEHAEYAKNID 637


>gi|158319065|ref|YP_001511572.1| DNA gyrase, B subunit [Alkaliphilus oremlandii OhILAs]
 gi|158139264|gb|ABW17576.1| DNA gyrase, B subunit [Alkaliphilus oremlandii OhILAs]
          Length = 636

 Score =  632 bits (1629), Expect = e-179,   Method: Composition-based stats.
 Identities = 261/653 (39%), Positives = 396/653 (60%), Gaps = 23/653 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           ++  +  Y A  I++LEGL+PVR RPGMYIG T  + LHHL  EV+DN++DE + GY + 
Sbjct: 2   DKIKTQEYSAEQIQVLEGLDPVRKRPGMYIGTTGPRGLHHLVYEVVDNSIDEALGGYCDT 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V++  +  + V+DNGRGIPV+ HP+   KSTLE +LT LHAGGKF    Y++SGGLHG
Sbjct: 62  ILVTIKEDDSIEVIDNGRGIPVDVHPQ-TGKSTLETVLTVLHAGGKFGGGGYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+SVVNALS+ L  T+     ++ Q+F RG P+  ++   + +  +GT I F+PD +IF
Sbjct: 121 VGVSVVNALSEYLEATIKLDGKVYWQRFERGNPVEDIKIIGETKE-KGTTILFKPDAEIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   F    L    +  A+L+  +K      +E  E     +++ FY+ GG+  Y++  
Sbjct: 180 EETV-FQYETLEYRLRELAFLNKGIKIVLIDKREGKE-----QEKVFYYDGGIMEYVKYL 233

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            +N+S++  +I   + EK+ +    VE A+ + +     I SY N I T EGGTH SG R
Sbjct: 234 NKNKSVLHEKIIHFEKEKETS---VVEVAMQYTDTYTENIFSYANNINTHEGGTHLSGFR 290

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            +LTR +  YA+      ++  + + +D+      ++SV + EP+F GQTKTKL + + +
Sbjct: 291 ASLTRIVNDYAKKAGFLKEKDANFLGEDIREGLTAVISVKLTEPQFEGQTKTKLGNSEMR 350

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
             VEN++ +  + +L +NP +A  ++E  +     R   +K RE   RK A+  + LPGK
Sbjct: 351 GIVENSVSEALEAFLEENPSDAKIIVEKSLRAQRAREAAKKARELTRRKGALESMALPGK 410

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS+     +E++IVEG+SAGGSAKQ R+RS QA+LPLRGKILNV  A  +K+ N+ +
Sbjct: 411 LADCSEKDPALSEIYIVEGNSAGGSAKQGRDRSIQAILPLRGKILNVEKARLDKMLNSDE 470

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I +++ A G     ++  E LRY K++IMTDADVDGAHI +LLLTF ++ M  LIE+ ++
Sbjct: 471 IRNMITAFGTSIGEEFDIEKLRYHKIVIMTDADVDGAHIRTLLLTFLFRFMKPLIERGYI 530

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL+++ +G    YA+ EE  Q  L E      G ++I R+KGLGEM   QL ET 
Sbjct: 531 YIAQPPLYKLKKGKVEEYAYSEEEMQVKLSEMG----GNVDIQRYKGLGEMNPEQLWETT 586

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           M+   RT L+V I           +    LMG K + R +FI++ + ++ ++ 
Sbjct: 587 MNPETRTFLQVTIED----AAAADNIFTTLMGDKVEPRREFIEQNSKYVTNLD 635


>gi|302669379|ref|YP_003829339.1| DNA gyrase subunit B GyrB [Butyrivibrio proteoclasticus B316]
 gi|302393852|gb|ADL32757.1| DNA gyrase subunit B GyrB [Butyrivibrio proteoclasticus B316]
          Length = 650

 Score =  632 bits (1629), Expect = e-179,   Method: Composition-based stats.
 Identities = 261/647 (40%), Positives = 387/647 (59%), Gaps = 15/647 (2%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y A  I+ILEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AG+ + IEV+++ 
Sbjct: 12  YGADQIQILEGLEAVRKRPGMYIGTTASRGLHHLVYEIVDNSVDEALAGFCDHIEVTINE 71

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +  + V DNGRGIPV+ + K    + +E++ T LHAGGKF    Y++SGGLHGVG SVVN
Sbjct: 72  DNTIIVQDNGRGIPVDVNHK-SGLTGVEVVFTILHAGGKFGGGGYKVSGGLHGVGASVVN 130

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222
           ALS+ L V V R+  ++ Q++ RG    PL++      N  GTR+ F+PD +IF +   F
Sbjct: 131 ALSEWLEVQVTRRGKVYQQRYERGKVCYPLKEVGTAPENVTGTRVYFKPDAEIFRETTVF 190

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           + + L +  +  A+L+  +K   +  +   E+   P ++ F++ GG+K ++Q   +N++ 
Sbjct: 191 EYSVLKQRLREMAFLTKGLKITLTDKR--VEEGEDPIQQTFHYEGGIKEFVQYLNKNKTS 248

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +  +I   +  +       VE +    +     I ++ N I T EGGTH  G + ALT+ 
Sbjct: 249 LYGDIMYFEGNRNNVQ---VEVSFQHNDSYNESIYTFVNNINTPEGGTHLEGFKAALTKT 305

Query: 342 IKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
              YA   +  +    ++  +D+      I+SV I +P+F GQTK KL + +A+  V   
Sbjct: 306 FNDYARANKMLKDSEENLTGEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARGAVAGV 365

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +   +YL QNP  A ++LE  I     R   RK R+   RK+A+  + LPGKLADCS 
Sbjct: 366 VSEQLTYYLEQNPNVAKQILEKAILAQRARDAARKARDLTRRKSALDGMGLPGKLADCSD 425

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E+FIVEGDSAGGSAK AR+R+ QA+LPLRGKILNV  A  ++I  N +I  ++ 
Sbjct: 426 KDPKNCEIFIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARVDRIYGNAEIKAMIT 485

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A G      +    LRY+K+IIMTDADVDGAHI++L+LTF Y+ M +LI+Q H++L  PP
Sbjct: 486 AFGTGIHDDFDISKLRYDKIIIMTDADVDGAHISTLMLTFLYRFMPELIKQGHVYLAQPP 545

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+++ +  K  YA+ +E   KIL +  +    K  I R+KGLGEM   QL ET MD  +R
Sbjct: 546 LYKLEKNKKVWYAYSDEELDKILTDVGRDQNNK--IQRYKGLGEMDPEQLWETTMDPERR 603

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            LLRV +++   S  D   +   LMG K + R +FI++ A F+ ++ 
Sbjct: 604 VLLRVNMDE--ESSSDIDVTFTTLMGDKVEPRREFIEKNAKFVKNID 648


>gi|296452676|ref|ZP_06894367.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Clostridium
           difficile NAP08]
 gi|296880071|ref|ZP_06904040.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Clostridium
           difficile NAP07]
 gi|296258458|gb|EFH05362.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Clostridium
           difficile NAP08]
 gi|296428938|gb|EFH14816.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Clostridium
           difficile NAP07]
          Length = 633

 Score =  632 bits (1629), Expect = e-179,   Method: Composition-based stats.
 Identities = 258/648 (39%), Positives = 386/648 (59%), Gaps = 22/648 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y AS I++LEGLE VR RPGMYIG T  + LHHL  EV+DN++DE + GY + I VS+
Sbjct: 3   QEYGASQIQVLEGLEAVRKRPGMYIGSTSPRGLHHLVYEVVDNSIDEALQGYCSDIYVSI 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G + V DNGRGIPVE HPK   KSTLE +LT LHAGGKF    Y++SGGLHGVG+SV
Sbjct: 63  NEDGSVLVKDNGRGIPVEIHPK-TGKSTLETVLTNLHAGGKFGGGGYKVSGGLHGVGVSV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  +   V     I+ Q + +G+P S LE   +  + +GT I F PD  IF +   
Sbjct: 122 VNALSKWMVAEVYLNGKIYKQTYEKGLPTSKLEVVGESHD-KGTMIQFMPDETIFDEI-E 179

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F    L    +  ++L+  +K  +   +E  EK        F++ GGL  Y++   ++R+
Sbjct: 180 FKYETLEYRLRELSFLNKGIKIVFEDKREGQEKRKE-----FHYTGGLVEYIKYLNKSRT 234

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I  +I       K      VE A+ + +     I S+ N I T EGG+H SG + ALT+
Sbjct: 235 GIHDDIVYI---DKKVDDCFVELAMQYTDGYTENIYSFANNINTHEGGSHLSGFKAALTK 291

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +  YA+  +   +  ++++ +D+      ++SV + EP+F GQTKTKL +   +  V++
Sbjct: 292 TVNDYAKRNKFLKENDVNLLGEDIREGLTAVVSVKLPEPQFEGQTKTKLGNSFMRGIVDS 351

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
              D    +L +NP+ A  +++  +     R   +K RE   RK+ +    LPGKLADC+
Sbjct: 352 VTVDELGSFLEENPVTARIIVDKALRAQRAREAAKKARELTRRKSVLESTSLPGKLADCA 411

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           +     +E+F+VEGDSAGGSAKQ R+R++QA+LPLRGKILNV  +  ++I ++ +I +++
Sbjct: 412 EKDPAKSEIFLVEGDSAGGSAKQGRDRNSQAILPLRGKILNVEKSRLDRILSSDEIKNMI 471

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A GC     +  +  RY K+IIMTDADVDGAHI +LLLTFF++ M  LI++ +++   P
Sbjct: 472 TAYGCGIGEDFDIDKARYHKIIIMTDADVDGAHIRTLLLTFFFRYMRPLIDEGYVYAAQP 531

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+++T+  K  Y + ++    +L+E  ++G   +E+ R+KGLGEM A QL ET M+   
Sbjct: 532 PLYKVTKQKKEHYVYSDKELNILLDEIGRNG---VELQRYKGLGEMNAEQLWETTMNPET 588

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           RTLL+V +           +  + LMG K   R +FI+E A F+ ++ 
Sbjct: 589 RTLLQVTVED----AAIADEVFSMLMGDKVAPRKEFIEENARFVRNLD 632


>gi|320527132|ref|ZP_08028319.1| DNA gyrase, B subunit [Solobacterium moorei F0204]
 gi|320132460|gb|EFW25003.1| DNA gyrase, B subunit [Solobacterium moorei F0204]
          Length = 664

 Score =  631 bits (1628), Expect = e-179,   Method: Composition-based stats.
 Identities = 262/653 (40%), Positives = 375/653 (57%), Gaps = 21/653 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
             +  Y+ S I++L+GLE VR RPGMYI  T  K LHHL  E++DN +DE +AGYA+ + 
Sbjct: 26  KVTHTYNDSDIQVLDGLEAVRKRPGMYIASTSSKGLHHLVWEIVDNGIDEAMAGYASTVT 85

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++D +  +TV D+GRG+P   H K   KST+E I T LHAGGKF    Y++SGGLHGVG
Sbjct: 86  VTVDKDNIITVEDDGRGMPTGIHEK-TGKSTIETIFTVLHAGGKFGGGAYKVSGGLHGVG 144

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVR-NKRGTRITFRPDPKIF 216
            SVVNALS  L VTV      +  +F  G  P+  L +K     +K G+ + F+ DP IF
Sbjct: 145 ASVVNALSSWLEVTVFHDGKEYYIRFENGGHPVGTLIEKGTCPADKHGSTVRFKADPTIF 204

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   ++   L    +  A+L+  +   ++  +E  E         F F GGLK Y +  
Sbjct: 205 TETVAYEHDILRDRLRQLAFLNKSICLKFNDLREEDE---AKRHYVFKFDGGLKQYTEFL 261

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
             NR +++ EI   +  +       VE A  + +   P I ++CN I T EGGTHE G R
Sbjct: 262 NRNRDVVNHEIIYSEGYESNIQ---VEVACQYNDGYNPNIYTFCNNINTAEGGTHEEGFR 318

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
           +AL R I KYA  T    ++  ++ +DD       ++SV   +P++ GQTKTKL + + +
Sbjct: 319 LALNRVINKYARDTGFLKEKDDNLTTDDCREGLTAVISVKHPDPQYEGQTKTKLGNSEVR 378

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
           + V +      + YL++NP EA  +LE V   S+ R+  +K RE   RK+A+    LPGK
Sbjct: 379 KIVSDIFGTQLERYLMENPDEAKVILEKVALASQARMAAKKARELTRRKSALEVSPLPGK 438

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS   A   E++IVEG SAGGSAKQ R+   QA+LPLRGKILNV  A   +I  N +
Sbjct: 439 LADCSSKDASICEIYIVEGQSAGGSAKQGRDSHFQAILPLRGKILNVEKARQSRIYENAE 498

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++ A GC    +   E LRY K++IMTDADVDGAHI +LLLTFFY+ +  L+EQ ++
Sbjct: 499 IRSMITAFGCGVSDEIDLEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRYLRPLLEQGYI 558

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL+++ +G    YA+ +   +++  E       ++ I R+KGLGEM   QL ET 
Sbjct: 559 YIAQPPLYKVQKGQTVRYAYTDNQLEEVKRELGD----RLSIQRYKGLGEMNPEQLWETT 614

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           MD   RTL+RV     +   +    +   LMG + + R  FI E A F +++ 
Sbjct: 615 MDPKNRTLIRV----AVGDAEAADYNFTMLMGEEVEPRKNFIVENAHFAENLD 663


>gi|145577987|gb|ABP82712.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar wratislaviensis]
          Length = 632

 Score =  631 bits (1628), Expect = e-179,   Method: Composition-based stats.
 Identities = 265/649 (40%), Positives = 382/649 (58%), Gaps = 21/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V DNGRGIPV    K   +  +E I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSILVTDNGRGIPVGIQEKM-GRPAVEAIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R   I  QK+ RGIP++ L+      +K GT   F+PDP+IF +  
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E    +  K G     VE A+ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF++ QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ETAMD  
Sbjct: 530 PPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETAMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632


>gi|319893736|ref|YP_004150611.1| DNA gyrase subunit B [Staphylococcus pseudintermedius HKU10-03]
 gi|317163432|gb|ADV06975.1| DNA gyrase subunit B [Staphylococcus pseudintermedius HKU10-03]
 gi|323463206|gb|ADX75359.1| DNA gyrase, B subunit [Staphylococcus pseudintermedius ED99]
          Length = 640

 Score =  631 bits (1628), Expect = e-179,   Method: Composition-based stats.
 Identities = 251/655 (38%), Positives = 382/655 (58%), Gaps = 20/655 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            A+ + S+NY AS I++LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AGYA
Sbjct: 1   MADVNNSENYGASQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYA 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + IEV ++ + ++ V DNGRGIPV+   K   +  +E+ILT LHAGGKF    Y++SGGL
Sbjct: 61  DNIEVVIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS+ L V V R   I  Q + +G+P   L++     ++ GT I F+ D  
Sbjct: 120 HGVGSSVVNALSETLEVYVHRDGRIHHQAYHKGVPAFDLKQVGDT-DQTGTVIRFKADGT 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   ++   L K  +  A+L+  ++   + +++         ++ +++ GG+K+Y++
Sbjct: 179 IFQETTVYNYETLQKRIRELAFLNKGIRITLTDERDEE----NVREDSYHYEGGIKSYVE 234

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              EN+  +  E       +       VE A+ +       + +Y N I T EGGTHE G
Sbjct: 235 LINENKEPLHDEPVYVHQTRDDI---EVEIALQYNSGFATNLLTYANNIHTYEGGTHEDG 291

Query: 334 LRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            + ALTR +  Y   ++  +        +D       ++S+   +P+F GQTKTKL + +
Sbjct: 292 FKRALTRVLNNYGTQSKLIKEDKDRLSGEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSE 351

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            ++ V+    + F+ +L ++P  A  ++E  I  S  R+  +K RE   RK+A+    LP
Sbjct: 352 VRQIVDRVFSELFERFLYEHPQVARIIVEKGIMASRARIAAKKAREVTRRKSALDISSLP 411

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS      +E+F+VEGDSAGGS K  R+   QA+LPLRGKILNV  A  +KI NN
Sbjct: 412 GKLADCSSKDPSESEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDKILNN 471

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
            +I  +V A G     ++     RY K++IMTDADVDGAHI +LLLTFFY+ M  LIE  
Sbjct: 472 NEIRQMVTAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAG 531

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPL+++TQG +  Y  ++    K+ E+   +   K  I+R+KGLGEM A QL E
Sbjct: 532 YVYIAQPPLYKLTQGKQKYYVFNDRELDKLKEKL--NPTPKWSIARYKGLGEMNADQLWE 589

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T M+   R +L+V ++  +    +   +   LMG   + R +FI++ A +  ++ 
Sbjct: 590 TTMNPENRAMLQVTLDDAI----EADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 639


>gi|229014660|ref|ZP_04171774.1| DNA gyrase subunit B [Bacillus mycoides DSM 2048]
 gi|229170197|ref|ZP_04297883.1| DNA gyrase subunit B [Bacillus cereus AH621]
 gi|228613298|gb|EEK70437.1| DNA gyrase subunit B [Bacillus cereus AH621]
 gi|228746671|gb|EEL96560.1| DNA gyrase subunit B [Bacillus mycoides DSM 2048]
          Length = 642

 Score =  631 bits (1628), Expect = e-179,   Method: Composition-based stats.
 Identities = 261/654 (39%), Positives = 380/654 (58%), Gaps = 21/654 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
             Q   + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY +
Sbjct: 5   QKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 64

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I VS++ +  + V D+GRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLH
Sbjct: 65  EINVSIEEDNSIVVTDDGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 123

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS EL V V R   I  QK+ RG+P + L+   +  ++ GT   F+PD +I
Sbjct: 124 GVGASVVNALSTELEVFVHRDGKIHYQKYERGVPAADLKVIGET-DRTGTITRFKPDSEI 182

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++ 
Sbjct: 183 FTETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 236

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
              ++  I  E       K G     VE A+ + E       S+ N I T EGGTHE G 
Sbjct: 237 LNRSKQPIHEEPVYVDGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGF 293

Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           + ALTR I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A
Sbjct: 294 KTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 353

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           +   E+   + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPG
Sbjct: 354 RTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPG 413

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N 
Sbjct: 414 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 473

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++  ++ A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  +
Sbjct: 474 EVRTIITAIGTNIGGDFAIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 533

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPLF++ QG K  YA++ +  +KIL E     K    I R+KGLGEM  +QL ET
Sbjct: 534 IYIAQPPLFKVQQGKKIQYAYNNKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 591

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 592 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 641


>gi|145578025|gb|ABP82731.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           weihenstephanensis]
          Length = 632

 Score =  631 bits (1628), Expect = e-179,   Method: Composition-based stats.
 Identities = 261/649 (40%), Positives = 379/649 (58%), Gaps = 21/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V D+GRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSIVVTDDGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R   I  QK+ RGIP + L+   +  ++ GT   F+PD +IF +  
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPAADLKVIGET-DRTGTITRFKPDAEIFTETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E       K G     VE A+ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVDGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF++ QG K  YA++ +  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKVQQGKKIQYAYNNKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632


>gi|159904302|ref|YP_001551646.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9211]
 gi|159889478|gb|ABX09692.1| DNA gyrase, subunit B [Prochlorococcus marinus str. MIT 9211]
          Length = 658

 Score =  631 bits (1628), Expect = e-179,   Method: Composition-based stats.
 Identities = 260/652 (39%), Positives = 377/652 (57%), Gaps = 16/652 (2%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
               +Y A  I++LEGLEPVR RPGMYIG T  + LHHL  EV+DN++DE +AG+ + I 
Sbjct: 9   KVQADYGAEQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALAGHCDEIV 68

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V L  +G  ++ DNGRGIP + HP+   KS LE +LT LHAGGKF +  Y++SGGLHGVG
Sbjct: 69  VVLCNDGSASITDNGRGIPTDIHPR-TGKSALETVLTVLHAGGKFGSGGYKVSGGLHGVG 127

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPL---SPLEKKEKVRNKRGTRITFRPDPKI 215
           +SVVNALS+ + VTV RQN    Q+F RG+P+   +  ++    +   GT + F+PD +I
Sbjct: 128 VSVVNALSEWVEVTVRRQNQTHVQRFERGVPVGGLTSKDQPSSQKGVTGTTVCFKPDNQI 187

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA-EKYGIPEKEEFYFPGGLKTYLQ 274
           F     F+ A L    +  AYL+G V+  +  +++ +    G P +E +++ GG+K Y+ 
Sbjct: 188 FTSGIEFEYATLSSRLRELAYLNGGVRIVFRDERKTSLTTEGDPYEEIYFYQGGIKEYVS 247

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGL 334
                +  +  EI    +EK G  +            +  I  + N I T +GGTH  GL
Sbjct: 248 YINSEKDALHPEIIYVNSEKDGV-QVEAALQWCVDAYSDSILGFANNIRTVDGGTHIEGL 306

Query: 335 RVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           +  LTR +  +A     ++    ++  +++      +LSV + EPEF GQTKTKL + + 
Sbjct: 307 KTVLTRTLNSFARKRGKRKDGDNNLAGENIREGLTVVLSVKVPEPEFEGQTKTKLGNTEV 366

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
           +  V++ + +    YL  NP     +LE  I+        R+ RE V RK+ +    LPG
Sbjct: 367 RGIVDSLVGESLSQYLEFNPSVIDLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPG 426

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILN+      KI  N 
Sbjct: 427 KLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNIEKTDDSKIYKNT 486

Query: 512 QIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           +I  L+ ALG   + +      LRY +V+IMTDADVDGAHI +LLLTFFY+   +L+E  
Sbjct: 487 EIQSLITALGLGIKGEEFSSKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKELVEGG 546

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPL+++ +G K  Y ++E   +K ++ F +  K    I RFKGLGEM+  QL E
Sbjct: 547 YIYIACPPLYKVERGKKHKYCYNESDLKKTIDGFGE--KANYTIQRFKGLGEMMPKQLWE 604

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           T MD + R + +VEI   L    +       LMG K   R +FI+  +  +D
Sbjct: 605 TTMDPSTRMMKKVEIEDAL----EADRIFTILMGDKVAPRRQFIETHSVELD 652


>gi|164510799|emb|CAK18881.1| topoisomerase II subunit B [Staphylococcus intermedius]
          Length = 640

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 251/655 (38%), Positives = 382/655 (58%), Gaps = 20/655 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            A+ + S+NY AS I++LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AGYA
Sbjct: 1   MADVNNSENYGASQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYA 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + IEV ++ + ++ V DNGRGIPV+   K   +  +E+ILT LHAGGKF    Y++SGGL
Sbjct: 61  DNIEVVIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALSD L V V R   I  Q + +G+P   L++     ++ GT I F+ D  
Sbjct: 120 HGVGSSVVNALSDTLEVYVHRDGRIHHQAYHKGVPAFDLKQVGDT-DQTGTVIRFKADGT 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   ++   L K  +  A+L+  ++   + +++         ++ +++ GG+K+Y++
Sbjct: 179 IFQETTVYNYETLQKRIRELAFLNKGIRITLTDERDEE----NVREDSYHYEGGIKSYVE 234

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              EN+  +  E       +       VE A+ +       + +Y N I T EGGTHE G
Sbjct: 235 LINENKEPLHEEPIYVHQTRDDI---EVEIALQYNSGFATNLLTYANNIHTYEGGTHEDG 291

Query: 334 LRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            + ALTR +  Y   ++  +        +D       ++S+   +P+F GQTKTKL + +
Sbjct: 292 FKRALTRVLNNYGAQSKLIKEDKDRLSGEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSE 351

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            ++ V+    + F+ +L ++P  A  ++E  I  S  R+  +K RE   RK+A+    LP
Sbjct: 352 VRQIVDRVFSELFERFLFEHPQVARIIVEKGIMASRARIAAKKAREVTRRKSALDISSLP 411

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS      +E+F+VEGDSAGGS K  R+   QA+LPLRGKILNV  A  +KI +N
Sbjct: 412 GKLADCSSKDPSESEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDKILSN 471

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
            +I  +V A G     ++     RY K++IMTDADVDGAHI +LLLTFFY+ M  LIE  
Sbjct: 472 NEIRQMVTAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAG 531

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPL+++TQG +  Y  ++    K+ E+   +   K  I+R+KGLGEM A QL E
Sbjct: 532 YVYIAQPPLYKLTQGKQKYYVFNDRELDKLKEKL--NPTPKWSIARYKGLGEMNADQLWE 589

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T M+   R +L+V ++  +    +   +   LMG   + R +FI++ A +  ++ 
Sbjct: 590 TTMNPENRAMLQVTLDDAI----EADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 639


>gi|146300010|ref|YP_001194601.1| DNA gyrase, B subunit [Flavobacterium johnsoniae UW101]
 gi|146154428|gb|ABQ05282.1| DNA gyrase subunit B [Flavobacterium johnsoniae UW101]
          Length = 646

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 269/661 (40%), Positives = 391/661 (59%), Gaps = 24/661 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +   +NY A SI+ LEG+E VRMRP MYIG    + LHHL  EV+DN++DE + G+ 
Sbjct: 1   MSEEIKKNNYSADSIQALEGMEHVRMRPSMYIGDVGVRGLHHLVYEVVDNSIDEAMGGHC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I V+++ +G +TV DNGRGIPV+ H K    S LE+++T + AGGKFD  +Y++SGGL
Sbjct: 61  DTIGVTINEDGSVTVEDNGRGIPVDLHKK-EGVSALEVVMTKIGAGGKFDKDSYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS  +  TV R+  I+ Q++ RG  L P+++  +  +KRGTR TF PD  
Sbjct: 120 HGVGVSVVNALSVHMKSTVFREGKIYEQEYERGKSLYPVKQIGET-DKRGTRQTFFPDDT 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     F    L    +  ++L+  +   ++  +E+ +K    + E F+   GLK Y++
Sbjct: 179 IFQQTTEFSYDTLSARMRELSFLNKGITITFTDKREVDDKG-EFKSEVFHSDEGLKEYIR 237

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               NR  I S + +   EK       VE A+ +       I SY N I T EGGTH  G
Sbjct: 238 YLDGNREPIISHVISMDHEK---GEIPVEVALIYNTSYSENIFSYVNNINTHEGGTHLQG 294

Query: 334 LRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R  LTR +KKYA+ +    K    I  DD       I+SV + EP+F GQTKTKL + +
Sbjct: 295 FRSGLTRTLKKYADASGLLDKLKFEISGDDFREGLTAIISVKVSEPQFEGQTKTKLGNRE 354

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLP 450
               V  A+ +  ++YL +NP +A  +++ VI  ++ R   +K RE+  RKT +    LP
Sbjct: 355 VVSPVSQAVGEMLENYLEENPNDAKIIIQKVILAAQARHAAKKAREMVQRKTVMGGGGLP 414

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL+DCS+      E+++VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV  A   K+  N
Sbjct: 415 GKLSDCSEQDPARCEVYLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMHHKVFEN 474

Query: 511 QQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           ++I ++  ALG    +         E LRY KVIIM DADVDG+HI++L+LTFF++ M +
Sbjct: 475 EEIRNIFTALGVTVGTAEDSKALNIEKLRYHKVIIMCDADVDGSHISTLILTFFFRFMKE 534

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           LIE+ H+++ +PPL+ + +G K  YA ++  + +  E       G   I R+KGLGEM A
Sbjct: 535 LIEEGHVYIAAPPLYLVKKGNKKEYAWNDVQRDQANERMG----GSANIQRYKGLGEMNA 590

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL ET MD   RTL +V I+    SL +     + LMG +   R +FI++ A +  ++ 
Sbjct: 591 EQLWETTMDPQFRTLRQVTID----SLAEADRVFSMLMGDEVPPRREFIEKNAVYA-NID 645

Query: 686 T 686
            
Sbjct: 646 A 646


>gi|312130783|ref|YP_003998123.1| DNA gyrase subunit b [Leadbetterella byssophila DSM 17132]
 gi|311907329|gb|ADQ17770.1| DNA gyrase subunit B [Leadbetterella byssophila DSM 17132]
          Length = 649

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 263/660 (39%), Positives = 384/660 (58%), Gaps = 22/660 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           +++   +Y AS+I++LEGLE VR RP MYIG    K LHHL  EV+DN++DE +AGY N 
Sbjct: 2   SENNKQDYSASNIQVLEGLEAVRKRPAMYIGDIGIKGLHHLIWEVVDNSIDEAMAGYCNR 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IE +++ +  +TV DNGRGIP   H K   KS LE++LT LHAGGKFD  TY++SGGLHG
Sbjct: 62  IETTINTDNSITVKDNGRGIPTGWHEK-EQKSALEVVLTVLHAGGKFDKDTYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+S VNALS  L   V R   I  Q+FS G PL P  +     + RGT I F+PD  IF
Sbjct: 121 VGVSCVNALSTHLRAEVHRDGKITEQEFSIGKPLYPAREIG-TTDYRGTIIHFKPDDSIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                +    +    +  ++L+  +    +  +E+ E+   P+ EEF+  GGL  +++  
Sbjct: 180 QV-TEYKYETVANRLRELSFLNKGITLTLTDLRELDEEG-KPKYEEFHSEGGLIEFVEYL 237

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335
            ++R  + +     + ++ G     VE ++ +     E  +S+ N I T EGGTH SG R
Sbjct: 238 DKSRERLITTPMYMEGQRDGVP---VEVSMTYNTSYSENVSSFVNNINTPEGGTHVSGFR 294

Query: 336 VALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
           +ALTR +K YAE +    K  I I  DD       ++SV + EP+F GQTK+KL + +  
Sbjct: 295 MALTRTLKSYAEKSGLLAKEKIEISGDDFREGLTAVISVKVAEPQFEGQTKSKLGNSEVT 354

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLPGK 452
             V   +++  ++YL +NP +A  +++ VI         ++ +  V RK  +    LPGK
Sbjct: 355 AAVSGCVQEMLENYLEENPKDAKIIVDKVILAARARIAAKKAREMVQRKNVLVGSGLPGK 414

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS++     E+++VEGDSAGGSAKQ R+R+ QA+LPLRGKILNV  A   KI  N++
Sbjct: 415 LADCSEHDPALCEVYLVEGDSAGGSAKQGRDRNFQAILPLRGKILNVEKAQEYKIYENEE 474

Query: 513 IMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
           I ++  ALG +   +  E       LRY K+IIMTDAD+DG+HI +L+LTFFY+ M ++I
Sbjct: 475 IKNIFTALGVQIGKEGDERALNLEKLRYHKIIIMTDADIDGSHIRTLILTFFYRFMREII 534

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLAS 626
           E  +L++  PPL+ + +G   +YA  EE +   +++    GK   + + R+KGLGEM   
Sbjct: 535 ENGYLYIAQPPLYLVKKGKDEIYAWTEEQRYAAVKKLAGGGKEENVGVQRYKGLGEMNPE 594

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           QL ET M+   RTL +V I     S  +     + LMG     R  FI++ A +  +V  
Sbjct: 595 QLWETTMNPQHRTLKQVTIE----SAAEADMLFSMLMGDDVPPRRDFIEKNARYA-NVDA 649


>gi|319405640|emb|CBI79263.1| topoisomerase protein [Bartonella sp. AR 15-3]
          Length = 692

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 429/695 (61%), Positives = 532/695 (76%), Gaps = 14/695 (2%)

Query: 1   MTDDSIDLFSTLPP---------QSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRI 51
           M++++ DLFS L           Q++  S   +K        A  N +  + Y+A SIR+
Sbjct: 1   MSENNKDLFSILNNAQSRIEMKEQNKPVSVNRQKVSRAISVSASHNDTEKNEYNALSIRV 60

Query: 52  LEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVD 111
           LEGLEPVR+RPGMYIGGTD KALHHLFSE+IDNAMDE +AGYA+LI+VSLD  G++TV D
Sbjct: 61  LEGLEPVRLRPGMYIGGTDSKALHHLFSEIIDNAMDEAVAGYADLIDVSLDSQGYITVTD 120

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171
           NGRGIP+ENHP+ P+KSTLE+I+T LH+G KFD   Y+ SGGLHGVGISVVNALSD++ V
Sbjct: 121 NGRGIPIENHPQMPDKSTLEVIMTQLHSGAKFDGKAYQTSGGLHGVGISVVNALSDDMEV 180

Query: 172 TVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMT 231
            V R+  ++ Q+FS GIP S LE    V N+RGTR+ F PD KIFG+KA F+A ++ K+ 
Sbjct: 181 EVVRERKLYRQRFSCGIPQSDLENLGDVYNRRGTRVRFHPDSKIFGEKAAFEAEKIYKIA 240

Query: 232 QSKAYLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
           +SKAYL G VK  W+CD  I E    +PEK  F+FP GLK YL + L+N   ++SE+F+G
Sbjct: 241 RSKAYLFGGVKIRWNCDPIILEGIKNVPEKAIFHFPNGLKDYLLSLLKNEYCVTSEVFSG 300

Query: 291 KTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
           +T K+ +  G+VEWAIAW   N  + SYCNTI T EGGTHE+GLR AL RG+K YAEL  
Sbjct: 301 RT-KQHSGHGSVEWAIAWYGGNACVQSYCNTIPTGEGGTHEAGLRQALLRGLKAYAELIG 359

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
           NKR+  I SDD+MISAV ILSVFIREPEF GQTK +L +++AQR VENA+RDPFDH+L  
Sbjct: 360 NKRSAIITSDDVMISAVAILSVFIREPEFVGQTKDRLATIEAQRIVENAIRDPFDHWLTN 419

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           +P EATKLL+WVIER+EERL+RR+ RE+NRKTA+RKLRLPGKLADC QN A G ELFIVE
Sbjct: 420 SPQEATKLLDWVIERAEERLKRRQDREINRKTAVRKLRLPGKLADCRQNSAAGAELFIVE 479

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530
           GDSAGGSAKQARNR NQA+LPLRGKILNVASA  EK+  +Q I DL+ ALGC+TRS+YRE
Sbjct: 480 GDSAGGSAKQARNRINQAILPLRGKILNVASAAREKMSTSQTINDLILALGCQTRSKYRE 539

Query: 531 EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVY 590
           +DLRYE++IIMTDADVDGAHIASLL+TFF+QEM DLI Q HL+L  PPL+RI+QG K  Y
Sbjct: 540 DDLRYERIIIMTDADVDGAHIASLLITFFFQEMPDLIRQGHLYLAVPPLYRISQGGKVAY 599

Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
           A D+ HK ++L+  +  GK KIEI RFKGLGEM A QLKET M   KRTLLRV I+    
Sbjct: 600 ARDDIHKDELLKT-EFTGKAKIEIGRFKGLGEMRAEQLKETTMHPQKRTLLRVSIDSV-- 656

Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           ++++T++ +  LMGTK + RF+FIQE ++F D++ 
Sbjct: 657 NIQETKNIVENLMGTKPEARFRFIQENSTFADNLD 691


>gi|148238483|ref|YP_001223870.1| DNA gyrase subunit B [Synechococcus sp. WH 7803]
 gi|147847022|emb|CAK22573.1| DNA gyrase subunit B [Synechococcus sp. WH 7803]
          Length = 655

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 272/658 (41%), Positives = 382/658 (58%), Gaps = 20/658 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
                    Y A  I++LEGLEPVR RPGMYIG T  + LHHL  EV+DN++DE +AG+ 
Sbjct: 2   SEAAKVQAAYGAEQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALAGHC 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I+V L  +G  +V DNGRGIP + HP+   KS LE +LT LHAGGKF    Y++SGGL
Sbjct: 62  SEIQVVLGEDGSASVTDNGRGIPTDVHPR-TGKSALETVLTVLHAGGKFGAGGYKVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE---KVRNKRGTRITFRP 211
           HGVG+SVVNALS+ + VTV RQ  +  Q+F RG P+  L  +    +   + GT + F+P
Sbjct: 121 HGVGVSVVNALSEWVEVTVRRQGQVHRQRFERGAPIGSLASEPQPAEEDGRTGTSVCFKP 180

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA-EKYGIPEKEEFYFPGGLK 270
           D +IF     FD A L    +  AYL+G V+  +  ++E A +  G P +E +++ GG+K
Sbjct: 181 DIEIFSVGIVFDYATLSARLRELAYLNGGVRIVFRDERESARDAEGNPHEETYFYEGGIK 240

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC--EENPEITSYCNTILTDEGG 328
            Y+      +  +  EI     EK G    +VE A+ WC    +  I  + N I T +GG
Sbjct: 241 EYVAYMNAEKDALHPEIIYVNAEKDGV---SVEAALQWCVDAYSDSILGFANNIRTVDGG 297

Query: 329 THESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH  GL+  LTR +  +A     ++    ++  +++      +LSV + EPEF GQTKTK
Sbjct: 298 THIEGLKTVLTRTLNTFARKRGKRKEADSNLAGENIREGLTAVLSVKVPEPEFEGQTKTK 357

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           L + + +  V++ + +    YL  NP     +LE  I+        R+ RE V RK+ + 
Sbjct: 358 LGNTEVRGIVDSLVGEALGQYLEFNPGVIDMILEKAIQAFNAAEAARRARELVRRKSVLE 417

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILN+      
Sbjct: 418 SSTLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDA 477

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           KI  N +I  L+ ALG   + +  +   LRY +V+IMTDADVDGAHI +LLLTFFY+   
Sbjct: 478 KIYKNTEIQALITALGLGIKGEDFDVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQK 537

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
           +L++  ++++  PPL+++ +G    Y ++E   QK LE F +  K    I RFKGLGEM+
Sbjct: 538 ELVDGGYIYIACPPLYKVERGKNHTYCYNEPELQKTLEGFGE--KANYNIQRFKGLGEMM 595

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
             QL ET MD   RT+ RVEI   L    +       LMG K   R +FI+  ++ +D
Sbjct: 596 PQQLWETTMDPTTRTMKRVEIEDAL----EADRIFTILMGDKVAPRREFIETHSAELD 649


>gi|145578023|gb|ABP82730.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar fukuokaensis]
          Length = 632

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 264/649 (40%), Positives = 382/649 (58%), Gaps = 21/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENAYDESQIQVLEGLEAVRERPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R   I  QK+ RGIP++ L+      +K GT   F+PDP+IF +  
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E    +  K G     VE A+ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF++ QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKVQQGKKIQYAYNDKELEKILAELPALPKPG--IQRYKGLGEMSPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632


>gi|193215259|ref|YP_001996458.1| DNA gyrase subunit B [Chloroherpeton thalassium ATCC 35110]
 gi|193088736|gb|ACF14011.1| DNA gyrase, B subunit [Chloroherpeton thalassium ATCC 35110]
          Length = 644

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 267/659 (40%), Positives = 373/659 (56%), Gaps = 22/659 (3%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           S        S  Y AS+I++L+G+E VR RP MYIG    + LHHL  E++DN++DE + 
Sbjct: 2   SEEVKEIEKSLEYGASNIQVLDGIEHVRRRPAMYIGDVGVRGLHHLVYEIVDNSVDEALG 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           GY + I V +  NG + V D GRGIP + HP+  N S L++++T + AGGKFD   Y++S
Sbjct: 62  GYNDYIFVQIKSNGSILVRDKGRGIPTDIHPQ-KNTSALQLVMTVIGAGGKFDKGAYKVS 120

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG SVVNALS+   V V R+  IF Q + +GIP +P+          GT+ TF P
Sbjct: 121 GGLHGVGASVVNALSEWCEVEVYREGKIFFQGYEKGIPKAPVSVIGTTSE-NGTKTTFLP 179

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           D  IF ++  F    L    +  AYL+  +      +++         ++EF+F GG++ 
Sbjct: 180 DESIFKNR-EFRYDTLADRMRELAYLNKNLTIVIEDERD-------GRRDEFHFKGGIQE 231

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTH 330
           ++      R  +  E    + EK GT    VE A  + +   E   SY N I T EGGTH
Sbjct: 232 FVTFMDSTRLKLIKEPIYFEGEKDGT---VVEIAFQYNDSYQENAFSYVNNINTHEGGTH 288

Query: 331 ESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  Y +     + + I    +D       ILSV + EP+F GQTKTKL 
Sbjct: 289 VTGFRKALTRTLNYYGQKNDLFKNLKISLTGEDFREGLTAILSVKVPEPQFEGQTKTKLG 348

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447
           + + Q  VE+ + +    Y+ Q+P E   +LE V+  +  R   RK ++   RK+A+   
Sbjct: 349 NSETQSIVESIVNEKLAEYIEQHPNEVKIILEKVVSAAIARDAARKAKDLTRRKSALESS 408

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADCS N     EL+IVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A   K+
Sbjct: 409 SLPGKLADCSINDPEHCELYIVEGDSAGGSAKQGRDRRFQAILPLKGKILNVEKARLNKM 468

Query: 508 RNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
             N++I  L+ ALG        +   LRY K+I+MTDADVDGAHI +LLLTFF++ M  L
Sbjct: 469 LENEEIRTLIMALGTSIGEDEFDASRLRYGKIILMTDADVDGAHIRTLLLTFFFRYMRGL 528

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           +E   +F+  PPL+ I  G +  YA D++ +  IL++F+  GK    I R+KGLGEM A 
Sbjct: 529 VEGGRVFIAQPPLYLIKSGKQQWYAWDDDERDDILKQFEVKGKENYGIQRYKGLGEMNAD 588

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           QL  T MD  KRTLL V I   +    +     + LMG + + R  FI+  A ++  + 
Sbjct: 589 QLWSTTMDPEKRTLLMVTIENAM----EADKIFSTLMGDQVEPRRAFIETNAKYVRRLD 643


>gi|281411537|ref|YP_003345616.1| DNA gyrase, B subunit [Thermotoga naphthophila RKU-10]
 gi|281372640|gb|ADA66202.1| DNA gyrase, B subunit [Thermotoga naphthophila RKU-10]
          Length = 636

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 264/651 (40%), Positives = 378/651 (58%), Gaps = 24/651 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + Y A SI++L+GLEPVRMRPGMYIG T ++ LHHL  EV+DN++DE +AGY + I V+L
Sbjct: 2   EKYSAESIKVLKGLEPVRMRPGMYIGSTGKRGLHHLVYEVVDNSVDEALAGYCDWIRVTL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G + V DNGRGIPV+ HP+   +S LE++ T LHAGGKF   +Y+ISGGLHGVG+SV
Sbjct: 62  HEDGSVEVEDNGRGIPVDIHPE-EGRSALEVVFTVLHAGGKFSKDSYKISGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+ L V V R   I+ Q++ RG P++P+E   +  +K GT + F+PDP IF +   
Sbjct: 121 VNALSEWLEVRVHRDGKIYRQRYERGKPVTPVEVIGET-DKHGTIVRFKPDPLIFSET-E 178

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L    +  A+L   +K  +       +K        F F GG+  Y++     + 
Sbjct: 179 FDPDVLEHRLREIAFLVPGLKIEFEDRINGEKKT-------FKFDGGIVEYVKYLNRGKK 231

Query: 282 LISSEIFTGKTEK----KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           +    I+  +TEK     G     VE A  + +    +I S+ NTI T +GGTH +  + 
Sbjct: 232 VFHDVIYMKRTEKVQTKNGEDEVIVEIAFQYTDSYSEDIVSFANTIKTVDGGTHVTAFKT 291

Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            LTR + +Y +     K   S   +D+      ++SV+++ PEF GQTK+KL + + +  
Sbjct: 292 MLTRLMNEYGKKHGFLKGDDSFQGEDVREGLTAVVSVYVKNPEFEGQTKSKLGNEEVKEA 351

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLA 454
           +   +RD        NP     +L  ++   + R   R+ RE+  RK  ++   LPGKLA
Sbjct: 352 INRVMRDELKKIFDANPELVKTILSKIMSTKQAREAARRAREMVRRKNVLQNTTLPGKLA 411

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS      TELFIVEGDSAGGSAKQAR+R  QAVLP+RGKILNV  +  +K+  N+QI 
Sbjct: 412 DCSSTDREKTELFIVEGDSAGGSAKQARDREFQAVLPIRGKILNVEKSSLDKLLKNEQIS 471

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           D++ A+G      + E  LRY ++IIMTDAD+DGAHI +LLLT FY+ M  LIEQ  +++
Sbjct: 472 DIIVAVGTGIGDDFDEGKLRYGRIIIMTDADIDGAHIRTLLLTLFYRYMRPLIEQGRVYI 531

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL+RI  G +  Y + +    +  E+ +     +IEI R+KGLGEM   QL ET M+
Sbjct: 532 ALPPLYRIKAGKEEFYVYSDLELMEYKEKLQG---KRIEIQRYKGLGEMNPEQLWETTMN 588

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              R ++RV I       ++       LMG     R +FI+  A  + ++ 
Sbjct: 589 PETRKIIRVTIED----AEEADRLFEILMGNDPSSRREFIERHALKVKELD 635


>gi|290968148|ref|ZP_06559693.1| DNA gyrase, B subunit [Megasphaera genomosp. type_1 str. 28L]
 gi|290781823|gb|EFD94406.1| DNA gyrase, B subunit [Megasphaera genomosp. type_1 str. 28L]
          Length = 640

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 259/650 (39%), Positives = 376/650 (57%), Gaps = 23/650 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y A  I++LEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AG+   IEV++
Sbjct: 7   KDYGAEQIQVLEGLEAVRKRPGMYIGSTSLRGLHHLVYEVVDNSVDEALAGFCTHIEVTI 66

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +  +TV DNGRGIPV  H     K  +E++LT LHAGGKF    Y ISGGLHGVGISV
Sbjct: 67  EADNSITVSDNGRGIPVAMHK--VGKPAVEVVLTVLHAGGKFGGDGYPISGGLHGVGISV 124

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDPKIFGDK 219
           VNALS +  V V R N ++   F+RGI    L K    +   + GT + F+PDP+IF D 
Sbjct: 125 VNALSIQTEVKVKRDNYLWDISFARGITEKKLTKTRALEPGEETGTTVHFKPDPEIFPDV 184

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             +D   L    +  A+L+  +    + ++E        ++E + + GGL +++Q   EN
Sbjct: 185 V-YDFDTLKTRLRELAFLNKGLHITLTDNREHN------KQEVYCYEGGLISFVQFLNEN 237

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  +   +     EK       V+ A+ + +     I ++ N I T+EGGTH SG R AL
Sbjct: 238 KQAVHPTVIPLDGEKNQVM---VDIAMQYNDGYSENILTFVNDIFTEEGGTHLSGFRSAL 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR I  Y        +   ++  +D+      I+SV +REP+F GQTKTKL + + +  V
Sbjct: 295 TRTINDYGRSAGIIKENEDNLSGEDVREGLTAIVSVKVREPQFEGQTKTKLGNSEVKGIV 354

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLAD 455
           +  + D    +  ++P+EA  ++   I  S  R   R+      RK A+    LPGKLAD
Sbjct: 355 DTLVSDGLREFFGEHPVEAKSIVNKTITASRARQAARRARELTRRKNALEISSLPGKLAD 414

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS+  +  TE+++VEGDSAGGSAKQ R+R  QA+LPLRGKI+NV  A  +KI  N++I  
Sbjct: 415 CSEKSSERTEIYLVEGDSAGGSAKQGRDRKFQAILPLRGKIINVEKARLDKILANEEIRA 474

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ A G     ++     RY+K+IIMTDADVDGAHI +LLLTFFY+ M  LI + H+++ 
Sbjct: 475 MITAFGTGIGEEFDITKRRYDKIIIMTDADVDGAHIRTLLLTFFYRFMKPLITEGHVYIA 534

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+++ +G +  Y + +E     L+E  +     I + R+KGLGEM   QL ET MD 
Sbjct: 535 QPPLYQVRKGKQMWYFYTDETMNAKLDELGRD-TNNIVVQRYKGLGEMNPEQLWETTMDP 593

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             RT+L+V +   +    +     + LMG K + R +FIQE A  + ++ 
Sbjct: 594 EYRTMLQVHLEDAV----EADRIFSVLMGDKVEPRRQFIQENAKKVRNLD 639


>gi|302340767|ref|YP_003805973.1| DNA gyrase subunit beta [Spirochaeta smaragdinae DSM 11293]
 gi|301637952|gb|ADK83379.1| DNA gyrase, B subunit [Spirochaeta smaragdinae DSM 11293]
          Length = 636

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 239/648 (36%), Positives = 373/648 (57%), Gaps = 19/648 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           ++Y A +I++L+GL+ VR RPGMYIG T  + LHHL  E++DN++DE +AG+ + I V +
Sbjct: 3   NSYSAQNIQVLKGLDAVRKRPGMYIGSTGPEGLHHLVYEIVDNSIDEALAGFCDEILVVI 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           +    + V DNGRGIP + H K    S LEI++T LHAGGKF+  TY++SGGLHGVG+SV
Sbjct: 63  EKGNIIRVEDNGRGIPTDLH-KEEGVSALEIVMTKLHAGGKFNKDTYKVSGGLHGVGVSV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+   V V R  +IF QK+ RG P   +    +     GT   F+PD +IF     
Sbjct: 122 VNALSEWCDVFVHRDGSIFYQKYDRGNPEKDVATVGETTRH-GTITRFKPDGEIFETV-E 179

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F    L +  +  A+L+  ++     ++   +K        F F GG+K+++    E++ 
Sbjct: 180 FSFDVLSRRLRELAFLNKGIRIIIEDERLPQKKTKE-----FQFEGGVKSFVSFLSESKK 234

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I  E    +  + G     +E A+ + E     I S+ N I T EGGTH  G + ALTR
Sbjct: 235 PIHKEPIYFEGIRDGI---DLECALEYNEGYSENIFSFVNNINTREGGTHLVGFKTALTR 291

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
               + + ++   K   +   DD+      ++SV + +P+F GQTK KL + + +  VE+
Sbjct: 292 TFNDFLKKSKFAKKMDETFSGDDVREGLTAVVSVKVPDPQFEGQTKAKLGNSEVRGVVES 351

Query: 399 ALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
            + +   +Y  +NP    K+LE + +        R+ +    RK+A+    LPGKLADC+
Sbjct: 352 LVAEHLTYYFEENPKLIEKILEKITMAARARIAARKARDLTRRKSALESSSLPGKLADCA 411

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           +     +E++IVEGDSAGGSAKQ R+R  QA+LPL GK+LNV    ++K+  N ++  ++
Sbjct: 412 EKDPSKSEVYIVEGDSAGGSAKQGRDRQFQAILPLWGKMLNVEKTRADKVLTNDKLQPII 471

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
             LG     ++    +RY KVIIM DADVDG+HI +LLLTFF++ M +L+E+ ++++  P
Sbjct: 472 ATLGAGAGKEFDISKVRYHKVIIMADADVDGSHIRTLLLTFFFRYMPELVERGYVYIAMP 531

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+++  G    YA+DE  ++KI++        K+ I R+KGLGEM  +QL ET MD + 
Sbjct: 532 PLYKMQLGKSITYAYDERDREKIMKSLFAEETEKVAIQRYKGLGEMNPNQLWETTMDPDS 591

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           R +++V +   +    +     + LMG   + R KFI++ A  + ++ 
Sbjct: 592 RKIMQVRLEDAV----EADQIFSTLMGEDVEPRRKFIEDNALMVSNLD 635


>gi|160914817|ref|ZP_02077031.1| hypothetical protein EUBDOL_00824 [Eubacterium dolichum DSM 3991]
 gi|158433357|gb|EDP11646.1| hypothetical protein EUBDOL_00824 [Eubacterium dolichum DSM 3991]
          Length = 648

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 254/662 (38%), Positives = 377/662 (56%), Gaps = 21/662 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86
            ++ +     N     +Y A  I++LEGLE VR RPGMYIG T E+ LHHL  E++DN++
Sbjct: 4   KQMKEIEEMENGKVDHSYTADDIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSI 63

Query: 87  DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146
           DE +AG+A  IE++++ +  + V DNGRG+PV    K    S +E I T LHAGGKF   
Sbjct: 64  DEALAGFATDIEIAIEKDNVIRVEDNGRGMPVGIVEK-TGISGVETIFTVLHAGGKFGGG 122

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
            Y++SGGLHGVG SVVNALS+ L VTV +       +F  G   S   K     +K G+ 
Sbjct: 123 AYKVSGGLHGVGASVVNALSEWLEVTVHQNGKKHFLRFENGGKPSGALKVIGDTDKHGSV 182

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F+ D  IF +   +    L    +  A+L+  ++     ++E   K        + + 
Sbjct: 183 VRFKADASIFTETQVYSFDTLNTRIRQLAFLNKGIRLVIIDEREEEAKRIE-----YKYD 237

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG++ Y++   +N++++  ++   +  ++G      E A+ + +   P I S+CN I T 
Sbjct: 238 GGIRQYVEYLNKNKNVLHEDVIYVEGLEEGIL---AEVALQYNDGYMPNIYSFCNNINTM 294

Query: 326 EGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           EGGTHE G R+ALTR I  YA      K+  ++  DD+      I+SV   +P++ GQTK
Sbjct: 295 EGGTHEDGFRLALTRVINAYARENNLIKKDETLAGDDVREGLTAIISVKHPDPQYEGQTK 354

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
           TKL + + ++ V   L D  + +L++NP  A  ++E  +  S+ R+  +K RE   RK+A
Sbjct: 355 TKLGNSEVRKIVSGILGDQLERFLIENPTTAKIIVEKGVLASKARMAAKKARELTRRKSA 414

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADCS   A   E++IVEGDSAGGSAKQ RN   QA+LPLRGKILNV  A 
Sbjct: 415 LEITSLPGKLADCSSKDASECEIYIVEGDSAGGSAKQGRNSKFQAILPLRGKILNVEKAR 474

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
             +I  N +I  +V A GC    +     LRY K++IMTDADVDGAHI +L+LTFFY+ +
Sbjct: 475 LHRIFENNEIRSMVTAFGCGIGDEIDISKLRYHKIVIMTDADVDGAHICTLMLTFFYRFL 534

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
             +IE  ++++  PPLF++ +G +  Y + EE  +++  E  ++    + + R+KGLGEM
Sbjct: 535 RPVIEGGYVYIAMPPLFKVAKGNRVEYVYKEEEMERVRAEMGEN----VNVQRYKGLGEM 590

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
              QL ET MD   RTL +V I   +    +       LMG + + R +FIQE A +   
Sbjct: 591 NPEQLWETTMDPAFRTLKQVNIEDAV----EADAIFEMLMGEEVEPRREFIQENAKYAT- 645

Query: 684 VG 685
           + 
Sbjct: 646 LD 647


>gi|256838953|ref|ZP_05544463.1| DNA gyrase, B subunit [Parabacteroides sp. D13]
 gi|262382583|ref|ZP_06075720.1| DNA gyrase, B subunit [Bacteroides sp. 2_1_33B]
 gi|256739872|gb|EEU53196.1| DNA gyrase, B subunit [Parabacteroides sp. D13]
 gi|262295461|gb|EEY83392.1| DNA gyrase, B subunit [Bacteroides sp. 2_1_33B]
          Length = 651

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 264/658 (40%), Positives = 388/658 (58%), Gaps = 21/658 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           ++ S  Y A SI++LEGLE VR RP MYIG T EK LHHL  EV+DN++DE +AGY   I
Sbjct: 6   KNTSTEYSADSIQVLEGLEAVRKRPSMYIGDTSEKGLHHLVYEVVDNSIDEALAGYCTYI 65

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +  +TV D+GRGIPV+ H K   KS LE++LT LHAGGKFD  TY++SGGLHGV
Sbjct: 66  DVVINEDNSITVTDDGRGIPVDIHEK-EGKSALEVVLTVLHAGGKFDKGTYKVSGGLHGV 124

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+S VNALS  L   V R   +  Q+FS G PL  ++  +   +K GT I+F+PD  IF 
Sbjct: 125 GVSCVNALSTYLKAEVRRNGKVHMQEFSCGKPLHDVQVIDNT-DKTGTTISFKPDGSIFT 183

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               +    L    +  A+L+  +    +  + + E     + E F+   GLK +++   
Sbjct: 184 VT-EYKYDILATRLRELAFLNAGITLRLTDKRVLKEDG-SFKSEVFHSDEGLKEFVRYID 241

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            ++  +  ++    TEK+G     VE A+ +       + SY N I T EGGTH +G R 
Sbjct: 242 RSKEKLIPDVIHIVTEKQGIP---VEVALTYNTSYNESVFSYVNDINTIEGGTHLAGFRR 298

Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
            LTR +KKYAE ++   K  + I  DD       ++S+ + EP+F GQTKTKL + +   
Sbjct: 299 GLTRTLKKYAEDSKLLEKAKVEIQGDDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVTG 358

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKL 453
            V+ A+ +   +YL ++P EA  +++ VI  ++ R   RK RE+ ++ + +    LPGKL
Sbjct: 359 AVDMAIGEALGYYLEEHPKEAKIIVDKVILAAQARHAARKARELVQRKSPLTGGGLPGKL 418

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS   A   ELF+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV  A   KI  +++I
Sbjct: 419 ADCSSKDAAICELFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMDHKIFESEEI 478

Query: 514 MDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            ++ +A+G    ++        E LRY KVIIMTDADVDG+HIA+L+LTFF++ M  LIE
Sbjct: 479 QNIYRAMGVTVGTEDDPKALNMEKLRYHKVIIMTDADVDGSHIATLILTFFFRRMRSLIE 538

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             +++L +PPL+   +G    Y   E+ +Q+ + ++    +  I   R+KGLGEM   QL
Sbjct: 539 NGYVYLATPPLYLCKKGKVEEYCWTEQQRQQFILKYGGGNENSIHTQRYKGLGEMNDHQL 598

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
            +T M+   RTL ++ I+    +  +       LMG     R +FI+E A++  ++  
Sbjct: 599 WDTTMNPENRTLKQITID----NAAEADQIFAMLMGEDVGPRREFIEENATYA-NIDA 651


>gi|237738561|ref|ZP_04569042.1| DNA gyrase subunit B [Fusobacterium sp. 2_1_31]
 gi|229424044|gb|EEO39091.1| DNA gyrase subunit B [Fusobacterium sp. 2_1_31]
          Length = 639

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 253/648 (39%), Positives = 377/648 (58%), Gaps = 20/648 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y+A +I +LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AGY N I+V + 
Sbjct: 6   SYEAQNITVLEGLEAVRKRPGMYIGTTSERGLHHLVWEIVDNSVDEALAGYCNKIDVKIL 65

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  + VVDNGRGIP + HPK+  KS LEI+LT LHAGGKF+N  Y++SGGLHGVG+SVV
Sbjct: 66  PDNIIEVVDNGRGIPTDIHPKY-GKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGVSVV 124

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAG 221
           NALS+ L V V ++  ++ QK+ RG P   ++       ++ GT + F+ D  IF     
Sbjct: 125 NALSEWLEVEVRKEGNVYYQKYHRGKPEEDVKIIGSCEASEHGTTVRFKADGDIFETLV- 183

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L    +  AYL+  +    S  ++  +K      E + F GG+  +L   ++  +
Sbjct: 184 YNYFTLSNRLKELAYLNRGLTITLSDLRKDEKKE-----ETYKFDGGILDFLNEIVKEET 238

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTR 340
            I  + F    E+       V+    +   +N  I S+ N I T EGGTH  G R ALT+
Sbjct: 239 TIIDKPFYVSAEQDNV---GVDVTFTYTTSQNEVIYSFVNNINTHEGGTHVQGFRTALTK 295

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I    +       +   ++ +D+    V I+S  I +P+F GQTK KL + +    V  
Sbjct: 296 VINDVGKAQGLLKDKDGKLMGNDIREGVVAIVSTKIPQPQFEGQTKGKLGNSEVSGIVNT 355

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCS 457
            + +    +L  NP     ++E ++   + R   +K RE+  + + +    LPGKLADC+
Sbjct: 356 IVSNSLKIFLEDNPAITKIVVEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCT 415

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
              A   E+FIVEGDSAGGSAKQ R+R NQA+LPLRGKI+NV  AG  K   + +I  +V
Sbjct: 416 SKKAEECEIFIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMV 475

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A G      +    LRY K+I+MTDADVDGAHI +L+LTF Y+ M DLI + ++++  P
Sbjct: 476 TAFGTSIGETFDISKLRYGKIILMTDADVDGAHIRTLILTFLYRYMKDLITEGNIYIACP 535

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+++  G + +YA+++   + IL +  +  K K  I R+KGLGEM   QL ET M+ + 
Sbjct: 536 PLYKVASGKQIIYAYNDLELKNILAQMNQENK-KYTIQRYKGLGEMNPEQLWETTMNPDG 594

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           R LL+V I+    + ++     +KLMG K + R +FI+E A ++ ++ 
Sbjct: 595 RLLLKVSID----NAREADMLFDKLMGDKVEPRREFIEEHAEYVKNID 638


>gi|87301672|ref|ZP_01084512.1| DNA topoisomerase IV subunit B [Synechococcus sp. WH 5701]
 gi|87283889|gb|EAQ75843.1| DNA topoisomerase IV subunit B [Synechococcus sp. WH 5701]
          Length = 652

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 257/649 (39%), Positives = 372/649 (57%), Gaps = 15/649 (2%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y A  I++LEGLEPVR RPGMYIG T  + LHHL  EV+DN++DE +AG+ + I V L  
Sbjct: 11  YGAEQIQVLEGLEPVRKRPGMYIGTTGPRGLHHLVYEVVDNSVDEALAGHCDEILVRLCE 70

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G   + DNGRGIP + HP+   KS LE +LT LHAGGKF +  Y++SGGLHGVGISVVN
Sbjct: 71  DGSAEITDNGRGIPTDIHPR-TGKSALETVLTVLHAGGKFGSGGYKVSGGLHGVGISVVN 129

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS+ + VTV RQ  +  Q+F RG P+  L  ++      GT + F+PD +IF     FD
Sbjct: 130 ALSEWVEVTVRRQGQVHRQRFERGTPIGSLRSEDDPSGATGTAVRFKPDIEIFSGGIDFD 189

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
            A L    +  AYL+G V+  +  ++E A+   G P +E +++ GG++ Y+      +  
Sbjct: 190 YATLSGRLRELAYLNGGVRIVFRDEREAAKGSDGSPHEEIYHYEGGIREYVTYMNAGKDP 249

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGI 342
           +  +I      K G  +            +  I  + N I T +GGTH  GL+  LTR +
Sbjct: 250 LHPDIIYVNASKDGV-QVEAALQWCVDAYSDSILGFANNIRTVDGGTHIEGLKTVLTRTL 308

Query: 343 KKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             +A+    ++    ++  +++      +LSV + +PEF GQTKTKL + + +  V++ +
Sbjct: 309 NTFAKKRGKRKDTDSNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLGNTEVRGIVDSVV 368

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQN 459
            +    +L  +P     +LE  I+        R+ RE V RK+ +    LPGKLADCS  
Sbjct: 369 GEALGEFLEFHPQVIDLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSR 428

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
               +E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILN+      KI  N +I  L+  
Sbjct: 429 DPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITG 488

Query: 520 LGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           LG   + +      LRY +++IMTDADVDGAHI +LLLTFFY+    L+E  ++++  PP
Sbjct: 489 LGLGIKGEEFNLSALRYHRIVIMTDADVDGAHIRTLLLTFFYRYQKTLLEGGYIYIACPP 548

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+++ +G    Y ++E+  +K L+ F +  K    I RFKGLGEM+  QL ET MD   R
Sbjct: 549 LYKVERGKNHTYCYNEQDLKKTLDGFGE--KANYTIQRFKGLGEMMPKQLWETTMDPTTR 606

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685
           T+ RVEI        +       LMG K   R +FI+  ++ +D   + 
Sbjct: 607 TMKRVEIED----AAEADRIFTILMGDKVAPRREFIETHSAELDFAQLD 651


>gi|302384449|ref|YP_003820271.1| DNA gyrase, B subunit [Clostridium saccharolyticum WM1]
 gi|302195077|gb|ADL02648.1| DNA gyrase, B subunit [Clostridium saccharolyticum WM1]
          Length = 637

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 262/650 (40%), Positives = 384/650 (59%), Gaps = 20/650 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S  Y A  I+ILEGLE VR RPGMYIG T  + LHHL  E++DNA+DE +AGY + IEV 
Sbjct: 2   SQEYGADQIQILEGLEAVRKRPGMYIGSTSTRGLHHLVYEIVDNAVDEALAGYCDSIEVI 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  +TVVD+GRGIPV    K      +E+  T LHAGGKF    Y++SGGLHGVG S
Sbjct: 62  IHPDNSVTVVDDGRGIPVGIQKKA-GIPAVEVAFTILHAGGKFGGGGYKVSGGLHGVGAS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  L V + +   I+ Q++ +G  + PL+   +   ++ GT++TF PD +IF + 
Sbjct: 121 VVNALSQWLEVEIRQDGKIYKQRYEKGKTMYPLKVIGECGPDEHGTKVTFLPDGEIFEET 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             +D   L    +  A+L+  +K     ++E   +        F++ GG+K ++    + 
Sbjct: 181 V-YDYDTLKIRLRETAFLTKNLKIILRDEREDKHE------HVFHYEGGIKEFITYLNKG 233

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ +  ++F  +  K G +   VE A+   +     I S+ N I T EGGTH +G + AL
Sbjct: 234 KTPLYDQVFYCEGTKDGVY---VEVAMQHNDSYTENIYSFVNNINTPEGGTHLAGFKNAL 290

Query: 339 TRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           T  +  YA   +  +    ++  +D+      I+SV I EP+F GQTK KL + +A+  V
Sbjct: 291 TTTLNDYARKNRLLKENETNLSGEDIREGLTAIISVKIEEPQFEGQTKQKLGNSEARGAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           +N LR+ F +YL QNP  +  + +  ++ +      R+ +    RKTA+  + LPGKLAD
Sbjct: 351 DNLLREQFTYYLEQNPSLSKTICDKSILAQRARAAARKARDLTRRKTALEGMALPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS       E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV  A  +KI  N +I  
Sbjct: 411 CSDKNPENCEIYIVEGDSAGGSAKTARSRNTQAILPLRGKILNVEKARLDKIYANAEIKA 470

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ A G      +    LRY K+IIMTDADVDGAHI++LLLTF Y+ M DLI++ +++L 
Sbjct: 471 MITAFGTGIHEDFDLSKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKEGYVYLA 530

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+++ +  K  YA+ +E    IL+E  +    K  I R+KGLGEM A QL ET MD 
Sbjct: 531 QPPLYKVEKNKKVWYAYSDEELNAILKEIGRDNNNK--IQRYKGLGEMDAEQLWETTMDP 588

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +R LLRV +N+D  S  +   +   LMG + + R +FI+  A ++ ++ 
Sbjct: 589 ERRVLLRVIMNEDTTS--EMDLTFTTLMGDQVEPRREFIEANAKYVQNLD 636


>gi|189499015|ref|YP_001958485.1| DNA gyrase, B subunit [Chlorobium phaeobacteroides BS1]
 gi|189494456|gb|ACE03004.1| DNA gyrase, B subunit [Chlorobium phaeobacteroides BS1]
          Length = 644

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 266/657 (40%), Positives = 378/657 (57%), Gaps = 25/657 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
              ++   Y+A++I+IL+G+E VR RP MYIG    + LHHL  E++DN++DE +AGY  
Sbjct: 5   QKNTSPQAYEATNIQILDGIEHVRKRPAMYIGDLHSRGLHHLIYEIVDNSIDETLAGYNE 64

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            IE+SL+ +G +TV DNGRGIPV+ HP+   KS LE+++T + AGGKFD   Y++SGGLH
Sbjct: 65  SIELSLNPDGSVTVTDNGRGIPVDIHPQ-KKKSALELVMTLIGAGGKFDKGAYKVSGGLH 123

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS+   V V R+  I+ Q++ +GIP   +E   +     GT+ TF PDP I
Sbjct: 124 GVGASVVNALSEWCEVEVYREGNIWFQRYHKGIPQRDVEVIGESTK-TGTKTTFMPDPDI 182

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     F    ++   +  A+L+  +K                 +E F++ GG+K ++  
Sbjct: 183 F-KITEFRKDIVVDRMRELAFLNNILKIVVKD--------IDGSEETFHYEGGIKEFVTF 233

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              NR  +  E      E+  T    VE A+ + +     + SY N I T EGGTH +G 
Sbjct: 234 TDHNRISLLKEPVYISGERDST---VVEIALQYNDSYQENVFSYVNNINTHEGGTHVTGF 290

Query: 335 RVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  YA+     + +   +  DD       I+SV + EP+F GQTKTKL + + 
Sbjct: 291 RKALTRTLNSYAQKNDLLKNLKLSLTGDDFKEGLTAIISVKVAEPQFEGQTKTKLGNSET 350

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
           Q  VE+ + +    +   NP     ++E V   +  R   RK ++   RK+A+    LPG
Sbjct: 351 QSIVESIVNEQLSDFAESNPGVLKTIIEKVKSAALSRDAARKAKDLTRRKSALESSGLPG 410

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS N     EL+IVEGDSAGGSAKQ R+RS QA+LPL+GKILNV  A   K+  N+
Sbjct: 411 KLADCSINDPEHCELYIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKARLHKMLENE 470

Query: 512 QIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           +I  ++ ALG     +    E LRY K+IIMTDADVDGAHI +LLLTFF++ M  LIE  
Sbjct: 471 EIKTIILALGTSFGEEEFSVEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYMRSLIEAG 530

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKK--HGKGKIEISRFKGLGEMLASQL 628
            +F+  PPL+ I  G +  YA D++ +  I+E  +K   G+G I I R+KGLGEM   QL
Sbjct: 531 KVFIAQPPLYLIKSGKEQKYAWDDDERNGIVESIRKKQKGRGNINIQRYKGLGEMNPEQL 590

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             T MD   R+LL+V +   +    +     + LMG K + R  FI++ A ++  + 
Sbjct: 591 WSTTMDPEHRSLLQVSVENAM----EADQVFSTLMGDKVEPRRNFIEKNARYVRRLD 643


>gi|150010130|ref|YP_001304873.1| DNA gyrase subunit B [Parabacteroides distasonis ATCC 8503]
 gi|149938554|gb|ABR45251.1| DNA gyrase, B subunit [Parabacteroides distasonis ATCC 8503]
          Length = 651

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 264/658 (40%), Positives = 388/658 (58%), Gaps = 21/658 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           ++ S  Y A SI++LEGLE VR RP MYIG T EK LHHL  EV+DN++DE +AGY   I
Sbjct: 6   KNTSTEYSADSIQVLEGLEAVRKRPSMYIGDTSEKGLHHLVYEVVDNSIDEALAGYCTYI 65

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +  +TV D+GRGIPV+ H K   KS LE++LT LHAGGKFD  TY++SGGLHGV
Sbjct: 66  DVVINEDNSITVTDDGRGIPVDIHEK-EGKSALEVVLTVLHAGGKFDKGTYKVSGGLHGV 124

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+S VNALS  L   V R   +  Q+FS G PL  ++  +   +K GT I+F+PD  IF 
Sbjct: 125 GVSCVNALSTYLKAEVRRNGKVHMQEFSCGKPLHDVQVIDNT-DKTGTTISFKPDGSIFT 183

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               +    L    +  A+L+  +    +  + + E     + E F+   GLK +++   
Sbjct: 184 VT-EYKYDILATRLRELAFLNAGITLRLTDKRVLKEDG-SFKSEVFHSDEGLKEFVRYID 241

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            ++  +  ++    TEK+G     VE A+ +       + SY N I T EGGTH +G R 
Sbjct: 242 RSKEKLIPDVIHIVTEKQGIP---VEVALTYNTSYNESVFSYVNDINTIEGGTHLAGFRR 298

Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
            LTR +KKYAE ++   K  + I  DD       ++S+ + EP+F GQTKTKL + +   
Sbjct: 299 GLTRTLKKYAEDSKLLEKAKVEIQGDDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVTG 358

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKL 453
            V+ A+ +   +YL ++P EA  +++ VI  ++ R   RK RE+ ++ + +    LPGKL
Sbjct: 359 AVDMAIGEALGYYLEEHPKEAKIIVDKVILAAQARHAARKARELVQRKSPLTGGGLPGKL 418

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS   A   ELF+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV  A   KI  +++I
Sbjct: 419 ADCSSKDASICELFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMDHKIFESEEI 478

Query: 514 MDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            ++ +A+G    ++        E LRY KVIIMTDADVDG+HIA+L+LTFF++ M  LIE
Sbjct: 479 QNIYRAMGVTVGTEDDPKALNMEKLRYHKVIIMTDADVDGSHIATLILTFFFRRMRSLIE 538

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             +++L +PPL+   +G    Y   E+ +Q+ + ++    +  I   R+KGLGEM   QL
Sbjct: 539 NGYVYLATPPLYLCKKGKVEEYCWTEQQRQQFILKYGGGNENSIHTQRYKGLGEMNDHQL 598

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
            +T M+   RTL ++ I+    +  +       LMG     R +FI+E A++  ++  
Sbjct: 599 WDTTMNPENRTLKQITID----NAAEADQIFAMLMGEDVGPRREFIEENATYA-NIDA 651


>gi|297582344|ref|YP_003698124.1| DNA gyrase subunit B [Bacillus selenitireducens MLS10]
 gi|297140801|gb|ADH97558.1| DNA gyrase, B subunit [Bacillus selenitireducens MLS10]
          Length = 637

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 255/648 (39%), Positives = 375/648 (57%), Gaps = 21/648 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +YD S I++LEGLE VR RPGMYIG T+E+ LHHL  E++DN++DE +AG+ + I V++
Sbjct: 6   QSYDESQIQVLEGLEAVRKRPGMYIGSTNERGLHHLVWEIVDNSIDEAMAGHCSHIWVTI 65

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +  +TV D+GRGIPV  H K   +  +E+I+T LHAGGKF    Y++SGGLHGVG SV
Sbjct: 66  EEDNTITVEDDGRGIPVGIHEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASV 124

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  L V V ++  +    F RG     L          GT I F+ D  IF +   
Sbjct: 125 VNALSSFLEVEVHKEGEVHYISFERGAVKEELNVIGSTEK-TGTLIRFKADNMIFTETTV 183

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +D   L    +  ++L+  +    +  +E        +  ++++ GG+ ++++     ++
Sbjct: 184 YDFDVLANRLRELSFLNKGLTIEITDKRE------EDKSAKYFYEGGISSFVEHLNRTKT 237

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            +       ++EK+G     VE A+ + +     + S+ N I T EGGTHESG + ALTR
Sbjct: 238 ALHEPPIFIESEKEGIQ---VEVAMQYNDSFASNLYSFANNINTHEGGTHESGFKTALTR 294

Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  YA      +    ++I DD+      I+SV I  P+F GQTKTKL + +A+   ++
Sbjct: 295 VINDYARKNGLFKENDPNLIGDDVREGLTAIVSVKIENPQFEGQTKTKLGNSEARTITDS 354

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
              +    ++ +NP  A +++E  I  S  R   +K RE   RK+A+    LPGKLADCS
Sbjct: 355 LFTEHMAKFMAENPTVARQIVEKGIMASRARDAAKKARELTRRKSALEVSSLPGKLADCS 414

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
              A  +E+++VEGDSAGGSAKQ R+R  QA+LPLRGKI+NV  A  +KI  N +I  ++
Sbjct: 415 TKDASISEIYVVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEKARLDKILANNEIRAII 474

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG     ++     RY K+IIMTDADVDGAHI +LLLTF Y+ M  LIE+ ++++  P
Sbjct: 475 TALGTGIGEEFDITKARYHKIIIMTDADVDGAHIRTLLLTFLYRYMRPLIEEGYIYIAQP 534

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL++I QG    YA +E+  ++IL E     K    + R+KGLGEM  +QL ET MD   
Sbjct: 535 PLYQIKQGKAVHYAFNEKEMERILGELSASPKPG--LQRYKGLGEMNPTQLWETTMDPAT 592

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           RTLL+V +   +       +    LMG + + R  FIQE A ++ ++ 
Sbjct: 593 RTLLQVSLKDAM----LADEVFETLMGDRVEPRRDFIQENAHYVKNLD 636


>gi|301308180|ref|ZP_07214134.1| DNA gyrase, B subunit [Bacteroides sp. 20_3]
 gi|300833650|gb|EFK64266.1| DNA gyrase, B subunit [Bacteroides sp. 20_3]
          Length = 651

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 264/658 (40%), Positives = 388/658 (58%), Gaps = 21/658 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           ++ S  Y A SI++LEGLE VR RP MYIG T EK LHHL  EV+DN++DE +AGY   I
Sbjct: 6   KNTSTEYSADSIQVLEGLEAVRKRPSMYIGDTSEKGLHHLVYEVVDNSIDEALAGYCTYI 65

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +  +TV D+GRGIPV+ H K   KS LE++LT LHAGGKFD  TY++SGGLHGV
Sbjct: 66  DVVINEDNSITVTDDGRGIPVDIHEK-EGKSALEVVLTVLHAGGKFDKGTYKVSGGLHGV 124

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+S VNALS  L   V R   +  Q+FS G PL  ++  +   +K GT I+F+PD  IF 
Sbjct: 125 GVSCVNALSTYLKAEVRRNGKVHMQEFSCGKPLHDVQVIDNT-DKTGTTISFKPDGSIFT 183

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               +    L    +  A+L+  +    +  + + E     + E F+   GLK +++   
Sbjct: 184 VT-EYKYDILATRLRELAFLNAGITLRLTDKRVLKEDG-SFKSEIFHSDEGLKEFVRYID 241

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            ++  +  ++    TEK+G     VE A+ +       + SY N I T EGGTH +G R 
Sbjct: 242 RSKEKLIPDVIHIVTEKQGIP---VEVALTYNTSYNESVFSYVNDINTIEGGTHLAGFRR 298

Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
            LTR +KKYAE ++   K  + I  DD       ++S+ + EP+F GQTKTKL + +   
Sbjct: 299 GLTRTLKKYAEDSKLLEKAKVEIQGDDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVTG 358

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKL 453
            V+ A+ +   +YL ++P EA  +++ VI  ++ R   RK RE+ ++ + +    LPGKL
Sbjct: 359 AVDMAIGEALGYYLEEHPKEAKIIVDKVILAAQARHAARKARELVQRKSPLTGGGLPGKL 418

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS   A   ELF+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV  A   KI  +++I
Sbjct: 419 ADCSSKDAAICELFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMDHKIFESEEI 478

Query: 514 MDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            ++ +A+G    ++        E LRY KVIIMTDADVDG+HIA+L+LTFF++ M  LIE
Sbjct: 479 QNIYRAMGVTVGTEDDPKALNMEKLRYHKVIIMTDADVDGSHIATLILTFFFRRMRSLIE 538

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             +++L +PPL+   +G    Y   E+ +Q+ + ++    +  I   R+KGLGEM   QL
Sbjct: 539 NGYVYLATPPLYLCKKGKVEEYCWTEQQRQQFILKYGGGNENSIHTQRYKGLGEMNDHQL 598

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
            +T M+   RTL ++ I+    +  +       LMG     R +FI+E A++  ++  
Sbjct: 599 WDTTMNPENRTLKQITID----NAAEADQIFAMLMGEDVGPRREFIEENATYA-NIDA 651


>gi|294781815|ref|ZP_06747148.1| DNA gyrase, B subunit [Fusobacterium sp. 1_1_41FAA]
 gi|294481925|gb|EFG29693.1| DNA gyrase, B subunit [Fusobacterium sp. 1_1_41FAA]
          Length = 639

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 249/648 (38%), Positives = 377/648 (58%), Gaps = 20/648 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y+A +I +LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AGY N I+V + 
Sbjct: 6   SYEAQNITVLEGLEAVRKRPGMYIGTTSERGLHHLVWEIVDNSVDEALAGYCNKIDVKIL 65

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  + VVDNGRGIP + HPK+  KS LEI+LT LHAGGKF+N  Y++SGGLHGVG+SVV
Sbjct: 66  PDNIIEVVDNGRGIPTDIHPKY-GKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGVSVV 124

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAG 221
           NALS+ L V V ++  ++ QK+ RG P   ++       N+ GT + F+ D  IF     
Sbjct: 125 NALSEWLEVEVRKEGNVYYQKYHRGKPEEDVKIIGSCEANEHGTTVRFKADGDIFETLV- 183

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L    +  AYL+  +    S  ++  +K        + F GG+  +L   ++  +
Sbjct: 184 YNYFTLSNRLKELAYLNRGLTITLSDLRKEEKKEET-----YKFNGGILDFLNEIVKEEA 238

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTR 340
            I  + F    E+       V+    +   +N  I S+ N I T EGGTH  G R ALT+
Sbjct: 239 TIIDKPFYVSAEQDNV---GVDVTFTYTTSQNETIYSFVNNINTHEGGTHVQGFRTALTK 295

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I    +       +   ++ +D+    V I+S  I +P+F GQTK KL + +    V +
Sbjct: 296 VINDVGKAQGLLKDKDGKLMGNDIREGVVAIVSTKIPQPQFEGQTKGKLGNSEVSGIVNS 355

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCS 457
            +      +L  NP     ++E ++   + R   +K RE+  + + +    LPGKLADC+
Sbjct: 356 IVSSSLKIFLEDNPAITKIVVEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCT 415

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
              A   E+FIVEG+SAGGSAKQ R+R NQA+LPLRGKI+NV  AG  K   + +I  +V
Sbjct: 416 SKKAEECEIFIVEGNSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMV 475

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A G      +    LRY K+I+MTDADVDGAHI +L+LTF Y+ M +LI + ++++  P
Sbjct: 476 TAFGTSIGDTFDISKLRYGKIILMTDADVDGAHIRTLILTFLYRYMRELINEGNIYIACP 535

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL++++ G + +YA+++   + +L +  +  K K  I R+KGLGEM   QL ET M+ + 
Sbjct: 536 PLYKVSSGKQIIYAYNDLELKNVLAQMNQDNK-KYTIQRYKGLGEMNPEQLWETTMNPDG 594

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           R LL+V ++    + ++     +KLMG K + R +FI+E A ++ ++ 
Sbjct: 595 RLLLKVSVD----NAREADMLFDKLMGDKVEPRREFIEEHAEYVKNID 638


>gi|293376413|ref|ZP_06622647.1| DNA gyrase, B subunit [Turicibacter sanguinis PC909]
 gi|325839309|ref|ZP_08166775.1| DNA gyrase, B subunit [Turicibacter sp. HGF1]
 gi|292644969|gb|EFF63045.1| DNA gyrase, B subunit [Turicibacter sanguinis PC909]
 gi|325490591|gb|EGC92906.1| DNA gyrase, B subunit [Turicibacter sp. HGF1]
          Length = 639

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 262/654 (40%), Positives = 387/654 (59%), Gaps = 19/654 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              ++ +  YDAS+I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AGY 
Sbjct: 1   MTQETTTQQYDASNIQVLEGLEAVRKRPGMYIGSTSGRGLHHLVWEIVDNSIDEALAGYC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             I V++  N  + V DNGRGIPV+ H K   KST+E + T LHAGGKF    Y++SGGL
Sbjct: 61  TEINVAITENNEIIVKDNGRGIPVDVH-KQTGKSTVETVYTVLHAGGKFGGGGYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS+ L VTV+R    + Q F +G P++ L    +  +  GT + F+PDP+
Sbjct: 120 HGVGASVVNALSEYLEVTVSRNGKKYFQSFEKGTPMNELHVIGE-SDTTGTEVKFKPDPE 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   +D   L    +  A+L+  +K      +        P++ EF+F GG+  Y+ 
Sbjct: 179 IFTETTVYDYDILRNRIRELAFLNKGLKITLEDLRSEK-----PQRHEFHFEGGISEYVS 233

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESG 333
              +N+ +I  ++   + E+ G    +VE A+ +       I S+ N I T EGGTHE+G
Sbjct: 234 FLNKNKEVIHEDVIYVEGERDGI---SVEIAMQYNTGVAGNIYSFANNINTHEGGTHEAG 290

Query: 334 LRVALTRGIKKYAELTQNKRAISI-ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
            R ALTR I  YA+     +     I +D+      I+S    +P+F GQTKTKL + + 
Sbjct: 291 FRAALTRIINSYAKKANLLKGDDALIGEDIREGLTAIISAKHPDPQFEGQTKTKLGNSEV 350

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPG 451
           +R  +N   + F+ +L++NP  A  +L+  +  +  R+  ++    V RK+ +  L    
Sbjct: 351 RRIADNVFSEGFERFLMENPQAAKLILDKSLMAARARMAAKRAREMVRRKSPLESLGFKS 410

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC    A+ +ELFIVEGDSAGGSAKQ R+   QA+LPLRGK+LNV  A  +K+  N 
Sbjct: 411 KLADCQSRDANISELFIVEGDSAGGSAKQGRDNKFQAILPLRGKVLNVEKARIDKVYANN 470

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++ A+G     ++  E  RY KV+IMTDADVDGAHI +LLLTFFY+ M  LIE  +
Sbjct: 471 EIKSMIHAIGTGVGDEFDIEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRPLIENGY 530

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPLF+I+QG +  YA+ +E  + ++E      +    + R+KGLGEM A QL ET
Sbjct: 531 VYIAQPPLFKISQGKRIEYAYSQEELEAVMETLSATPR--PNVQRYKGLGEMNAEQLWET 588

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   RTLL+V ++  +    +  +  + LMG + + R +FI   A ++ ++ 
Sbjct: 589 TMDPEVRTLLQVTLDDAV----EADEIFDMLMGDRVEPRREFIDANAKYVTNLD 638


>gi|256826465|ref|YP_003150424.1| DNA gyrase subunit B [Cryptobacterium curtum DSM 15641]
 gi|256582608|gb|ACU93742.1| DNA gyrase subunit B [Cryptobacterium curtum DSM 15641]
          Length = 645

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 254/653 (38%), Positives = 379/653 (58%), Gaps = 18/653 (2%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +   +YD   I++LEGLEPVR RPGMYIG T E+ LHHL  EV+DN++DE +AGY   I+
Sbjct: 4   NKPSHYDGKDIQVLEGLEPVRKRPGMYIGSTSERGLHHLVYEVVDNSVDEALAGYCTDIQ 63

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V +  +G + V DNGRGIPV+ HPK  +  T+E++LT LHAGGKF    Y++SGGLHGVG
Sbjct: 64  VWICDDGSIKVQDNGRGIPVDKHPK-EHIPTVEVVLTILHAGGKFGGEGYKVSGGLHGVG 122

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS ++ V V R    +   FSRG  +  L      +   GT + F PDP+IF +
Sbjct: 123 VSVVNALSTQMKVQVCRDGKRYEITFSRGKTVEKLHVVGDSK-HTGTTVRFWPDPEIFTE 181

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L +  +  A+L+  +K     ++E+  +  + + E F F  G+K +++    
Sbjct: 182 TTVFNYNTLAERFREMAFLNKGLKITLYDERELDGEG-VAKHETFQFQDGIKDFVKFLTT 240

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRV 336
            + +++++    + E      G VE A+ W          S+ N I T EGGTH  G + 
Sbjct: 241 GKEVLNTKPIYFEAEG---PAGEVEVAMQWTSSFSTNSVFSFANNINTIEGGTHLDGFKQ 297

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           A+TR I  YA       ++  ++  DD       ++SV + +P+F GQTKTKL + + ++
Sbjct: 298 AVTRTINDYAREKGILKEKDSNLTGDDCREGLSAVISVKLHDPQFEGQTKTKLGNSEMRQ 357

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKL 453
            V +A+      YL +NP  A +++    +  + R   RK RE+  RK  +    LPGKL
Sbjct: 358 LVSSAVNQGLGEYLEENPTPAKRIINKASQALKAREAARKAREMTRRKNVLDSFALPGKL 417

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS   A   E+FIVEGDSAGGSAKQAR+R  QA+LPLRGKILNV  AG  +  ++  I
Sbjct: 418 ADCSSKNAADCEMFIVEGDSAGGSAKQARDRKYQAILPLRGKILNVERAGLHRALSSDTI 477

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             L+ A+G      +  E  RY ++IIMTDADVDGAHI  LLLTFFY+ M +LI + +++
Sbjct: 478 SSLITAVGTNIGDDFDAEKARYHRIIIMTDADVDGAHIQILLLTFFYRYMPELINRGYIY 537

Query: 574 LISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           +  PPL+ I +G K + Y +++    + ++++      K  + R+KGLGEM   QL ET 
Sbjct: 538 IAMPPLYGIKEGKKKIRYVYNDNALAEAMKDYPTD--KKPSVQRYKGLGEMDPDQLWETT 595

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           M+   R L++V I          + ++++LMG + + R ++IQ+ A  +  + 
Sbjct: 596 MEPETRILMQVGIED----AAAAERAVSELMGDQVEPRKEYIQKHAKDVRFLD 644


>gi|291521103|emb|CBK79396.1| DNA gyrase subunit B [Coprococcus catus GD/7]
          Length = 636

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 264/649 (40%), Positives = 374/649 (57%), Gaps = 19/649 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S+ Y AS I+ILEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + IEV+
Sbjct: 2   SEGYGASQIQILEGLEAVRKRPGMYIGSTSAKGLHHLVYEIVDNSVDEALAGYCDHIEVT 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TVVDNGRGIPV    K      +E++ T LHAGGKF    Y++SGGLHGVG S
Sbjct: 62  INKDNSITVVDNGRGIPVGIQAKAHK-PAVEVVFTILHAGGKFGGGGYKVSGGLHGVGAS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ L V V      + Q++ RG  +  L+K       RGT + F PD +IF +  
Sbjct: 121 VVNALSEWLEVNVYVDGYEYYQRYERGKVMCELQKIGPTEK-RGTTVHFLPDKEIFEETV 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   L +  +  A+L+  ++   +  +E       P    F++ GG++ Y+    +  
Sbjct: 180 -FDYKVLKQRLREIAFLTKGLRISLTDVREE-----EPILSSFHYEGGIREYVAYLNKAN 233

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + +  EI   + EK G     VE A+   +     + S+ N I T EGGTH  G+R ALT
Sbjct: 234 TPLYDEIIYCEGEKDGVL---VEVALQHNDGYNENVYSFVNNITTPEGGTHLVGMRSALT 290

Query: 340 RGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           +    YA   +  +        +D+      I+S+ I EP+F GQTK KL + +A+  VE
Sbjct: 291 KTFNDYARKNKLLKDNEQSLTGEDIREGLTAIVSIKIGEPQFEGQTKQKLGNSEARGAVE 350

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
           + + D    +L QNP     ++E  +     R   RK R+   RK A+  + LPGKLADC
Sbjct: 351 SIVSDKLGVFLEQNPAIGKLIVEKSVMAQRARDAARKARDLTRRKGALDSMSLPGKLADC 410

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S       E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV  A  +KI  N +I  +
Sbjct: 411 SDKDPAKCEIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARLDKILVNNEIKAM 470

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A G      +    LRY K+IIMTDADVDGAHI++LLLTF Y+ M DLI + +++L  
Sbjct: 471 ITAFGTGIHEDFDITKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIREGYVYLAK 530

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL++I +  K  YA+ ++    IL E  +    K  I R+KGLGEM A QL ET MD  
Sbjct: 531 PPLYKIERNKKEWYAYSDDELNAILTEIGRDQNNK--IQRYKGLGEMDAEQLWETTMDPE 588

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +R L+RV ++          ++ + LMG K + R +FI++ A ++ ++ 
Sbjct: 589 RRILMRVSMDDAEK--VSIDETFSVLMGDKVEPRREFIEKNAKYVRNLD 635


>gi|319407212|emb|CBI80851.1| topoisomerase protein [Bartonella sp. 1-1C]
          Length = 692

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 431/695 (62%), Positives = 533/695 (76%), Gaps = 14/695 (2%)

Query: 1   MTDDSIDLFSTLPPQSQG--SSEKLKKSGEIP-------DSPAFANQSASDNYDASSIRI 51
           M+D++ DLFS L        + EK K     P        +    N+     Y+A SIRI
Sbjct: 1   MSDNNKDLFSILNNAQSRIDAKEKNKPISVTPQETSLAISTSESKNEIKEGEYNALSIRI 60

Query: 52  LEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVD 111
           LEGLEPVR+RPGMYIGGTD KALHHLFSE+IDNAMDE +AGYA+LI+VSLD  G+LTV D
Sbjct: 61  LEGLEPVRLRPGMYIGGTDSKALHHLFSEIIDNAMDEAVAGYADLIDVSLDKQGYLTVTD 120

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171
           NGRGIPVENHP+ P+KSTLE+I+T LH+G KFD   Y+ SGGLHGVGISVVNALSD++ V
Sbjct: 121 NGRGIPVENHPQMPDKSTLEVIMTQLHSGAKFDGKAYQTSGGLHGVGISVVNALSDDMEV 180

Query: 172 TVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMT 231
            VAR   ++ Q+FSRGIP S LE    + N+RGTR+ F PD KIFG+   F+  ++ KMT
Sbjct: 181 EVARDRKLYRQRFSRGIPQSSLENLGDIYNRRGTRVRFHPDSKIFGENVAFEPEQIYKMT 240

Query: 232 QSKAYLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
           +SKAYL G VK  W+CD ++ E    +PEK+ FYFP GLK YL + L+N   ++SE+F+G
Sbjct: 241 RSKAYLFGGVKIRWNCDPKMLEGIKNVPEKDVFYFPDGLKDYLLSSLKNEYRVTSEVFSG 300

Query: 291 KTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
           KT++ G+H G+VEWAIAW   N  + SYCNTI T EGGTHE+GLR AL RG+K YAEL  
Sbjct: 301 KTKQHGSH-GSVEWAIAWYGGNACVQSYCNTIPTGEGGTHEAGLRQALLRGLKAYAELIG 359

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
           NKR+  I SDD+MISA+ ILSVFIREPEF GQTK +L +++AQR VENA+RDPFDH+L  
Sbjct: 360 NKRSAIITSDDVMISAIVILSVFIREPEFVGQTKDRLATIEAQRIVENAIRDPFDHWLAN 419

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           +P EATKLL+W++ER+EER++RR+ +E+NRKT +RKLRLPGKLADCSQN A G ELFIVE
Sbjct: 420 SPQEATKLLDWIVERAEERVKRRQDKEINRKTTVRKLRLPGKLADCSQNSAIGAELFIVE 479

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530
           GDSAGGSAKQARNR NQA+LPLRGKILNVASA  EK+  +Q I DL+ ALGC TRS+YRE
Sbjct: 480 GDSAGGSAKQARNRVNQAILPLRGKILNVASAAHEKMSASQTINDLILALGCGTRSKYRE 539

Query: 531 EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVY 590
           +DLRYE++IIMTDADVDGAHIASLL+TFF+QEM DLI Q HL+L  PPL+RI+QG K  Y
Sbjct: 540 DDLRYERIIIMTDADVDGAHIASLLITFFFQEMTDLIRQGHLYLAVPPLYRISQGGKVAY 599

Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
           A D+ HK ++L+  +  GK KIEI RFKGLGEM A QLKET MD  KRTLLR+ I  D  
Sbjct: 600 ARDDNHKDELLKT-EFTGKAKIEIGRFKGLGEMRAEQLKETTMDPQKRTLLRIAI--DAV 656

Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +++T++++  LMGTK + RF+FIQE ++F D++ 
Sbjct: 657 DMQETKNTVESLMGTKPEARFRFIQENSTFADNLD 691


>gi|312878944|ref|ZP_07738744.1| DNA gyrase subunit B [Aminomonas paucivorans DSM 12260]
 gi|310782235|gb|EFQ22633.1| DNA gyrase subunit B [Aminomonas paucivorans DSM 12260]
          Length = 635

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 243/652 (37%), Positives = 368/652 (56%), Gaps = 23/652 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           ++ +  Y A  I++LEGLE VR RPGMYIG    + LHHL  EV+DNA+DE +AG  + +
Sbjct: 2   EAPASQYTAKDIQVLEGLEAVRKRPGMYIGDQGPRGLHHLVYEVVDNAIDEAMAGVCDTV 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V++   G ++VVDNGRGIP E H     KS  E++LT LHAG KFD   Y++SGGLHGV
Sbjct: 62  YVTIHPEGSVSVVDNGRGIPTEIHA-ATGKSAAEVVLTVLHAGAKFDKKAYQVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+ L VT+ R      Q+F RG  ++ L +  +  ++RGT++ F PD +IF 
Sbjct: 121 GVSVVNALSEWLEVTIWRNGREHRQRFERGAAVTEL-QTGEDTDRRGTKVQFMPDEEIFS 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F +  LL   +  A+L+  +   +   +          ++ ++F GG+ ++ +   
Sbjct: 180 TL-DFSSETLLGRLRELAFLNPGITIHFQDLR-----QDPILEKHYHFEGGIASFAEYLN 233

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
             + ++       + EK       V+ A+ + +     + ++ N I T EGGTH SG R 
Sbjct: 234 RGKEVLFKPPVVVRGEKDNV---VVDVALQYNDTYLERVFAFANLINTVEGGTHVSGFRT 290

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +   A   +    +  +   DDL      ++SV + EP+F GQTKTKL + D + 
Sbjct: 291 ALTRAVNDQARKEKILKDKDPNFTGDDLKEGLTAVVSVKLLEPQFEGQTKTKLGNGDVKG 350

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            V++ + +     L +       +++  +   + R   +K R+ V RK+A+  L LPGKL
Sbjct: 351 IVDSVVYEGLKALLEERADILKPVVDKAVRARQAREAAKKARDLVRRKSAMSGLDLPGKL 410

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS       E++IVEG+SAGGSAK  RNRS QA+LPLRGKILNV  A  +KI +N+ +
Sbjct: 411 ADCSNRNPEECEVYIVEGESAGGSAKMGRNRSFQAILPLRGKILNVERARLDKILSNEMV 470

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++QALGC     +    LRY K+ +M DADVDGAHI +LLLT F++ M  +IE  HL+
Sbjct: 471 RTIIQALGCGVGDDFDYAKLRYHKIFLMADADVDGAHIRTLLLTLFFRYMPQIIENGHLY 530

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           +  PPL+R+ +G    Y   ++  + + ++  K    ++ + R+KGLGEM   QL ET M
Sbjct: 531 VAQPPLYRVQEGKTVHYCFSDKELKTLTDKASK----RVSVQRYKGLGEMNPEQLWETTM 586

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D   R + RVE++  +       +    LMG   + R +FI+  A  + ++ 
Sbjct: 587 DPANRIIKRVEVDDAVT----ADELFGILMGDAVEPRREFIETHAKEVRNLD 634


>gi|218283252|ref|ZP_03489313.1| hypothetical protein EUBIFOR_01902 [Eubacterium biforme DSM 3989]
 gi|218216007|gb|EEC89545.1| hypothetical protein EUBIFOR_01902 [Eubacterium biforme DSM 3989]
          Length = 655

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 254/656 (38%), Positives = 378/656 (57%), Gaps = 24/656 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
                   +Y A  I++LEGLE VR+RPGMYIG T  + LHHL  E++DN +DE +AG+A
Sbjct: 18  SQATQVEHSYTADDIQVLEGLEAVRLRPGMYIGSTSARGLHHLVWEIVDNGIDEALAGFA 77

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           N I+V+++ +  + V DNGRG+PV  H K    S +E I+T LHAGGKF    Y++SGGL
Sbjct: 78  NRIDVTIEPDNIIAVRDNGRGMPVGIHEK-TGISAVETIMTVLHAGGKFGGGAYKVSGGL 136

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDP 213
           HGVG SVVNALS+ L VTV +   I+  +F  G   + PL+   +     GT + F+ D 
Sbjct: 137 HGVGASVVNALSEWLEVTVFQDGKIYFIRFENGGHAVEPLKVIGETTE-TGTLVRFKADS 195

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IF D   +D   L    +  A+L+  ++   +  +            ++ + GG+  Y+
Sbjct: 196 QIFKDTTVYDYEILNSRLRQLAFLNKDIRLTLTDKRTPD-----GLSNDYKYEGGIIEYV 250

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           Q   +N+S IS ++   +  + G      E A+ + +     I S+CN I T EGG HE 
Sbjct: 251 QFLNKNKSTISDKVIYVEGLQDGIL---AEVALQYNDGYQSSIYSFCNNIHTHEGGYHED 307

Query: 333 GLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           G R+ALTR I  YA+     K+  ++  DD+    V I+SV   +P++ GQTKTKL + +
Sbjct: 308 GFRMALTRCINTYAKNNNMIKKDETLSQDDVKEGLVAIISVKHPDPQYEGQTKTKLGNSE 367

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRL 449
            ++ V N   +  + + ++NP  A  ++E     S+ R+  +K RE+ R+ +       L
Sbjct: 368 VRKIVSNIAGEQINRFFLENPDIAKAIVEKAEIASKARIAAKKARELTRRKSALDGISSL 427

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKL DCS   A   E++IVEGDSAGGSAKQ R+   QA+LPLRGKILNV  A + +I  
Sbjct: 428 PGKLTDCSSKDASECEIYIVEGDSAGGSAKQGRDAKTQAILPLRGKILNVEKARTHRIFE 487

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           NQ+I  ++ A GC  +       LRY K++IMTDADVDG+HI +L+LTF Y+ M  +IE 
Sbjct: 488 NQEIRSMITAFGCGIQEDVDVSKLRYHKIVIMTDADVDGSHICTLMLTFLYRFMKPVIEG 547

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
            ++++  PPL+++ +G K  YA+ E+   ++ EEFK       ++ R+KGLGEM A QL 
Sbjct: 548 GYVYIAQPPLYKVQKGKKIAYAYKEQEMDQLREEFKD----GYKVQRYKGLGEMDAEQLW 603

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           ET MD + R L RV I+  +    +     + LMG   + R ++IQE A +  ++ 
Sbjct: 604 ETTMDPHHRVLKRVTIDDAM----EADSVFDMLMGEDVEPRREYIQENAVYA-NLD 654


>gi|86141195|ref|ZP_01059741.1| DNA gyrase subunit B [Leeuwenhoekiella blandensis MED217]
 gi|85831754|gb|EAQ50209.1| DNA gyrase subunit B [Leeuwenhoekiella blandensis MED217]
          Length = 646

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 256/660 (38%), Positives = 385/660 (58%), Gaps = 24/660 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + ++    Y A SI+ LEG+E VRMRP MYIG    + LHHL  EV+DN++DE +AG+ 
Sbjct: 1   MSEEANKKQYSADSIQALEGMEHVRMRPSMYIGDVGVRGLHHLVYEVVDNSIDEAMAGHC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I+V ++ N  ++V DNGRGIPV+ H K    S LE+++T + AGGKFD  +Y++SGGL
Sbjct: 61  DSIKVIINENNSISVKDNGRGIPVDLHKK-EGVSALEVVMTKIGAGGKFDKDSYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+S VNALS  L  TV R   I+ Q++ +G  + P++      + RGT +TF PDP 
Sbjct: 120 HGVGVSCVNALSTHLKATVYRDGKIWEQEYEKGKAMYPVKGIGDT-DDRGTAVTFLPDPS 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     ++   L    +  AYL+  +K   +  ++  EK      E F+   GLK +++
Sbjct: 179 IFQTTTEYNYDTLASRMRELAYLNKGIKISLTDKRQKDEKGD-FVSETFHSEEGLKEFVR 237

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               NR  I  E+ + + EK       VE A+ + +     + SY N I T EGGTH +G
Sbjct: 238 FLDGNRQPIIGEVISMEGEKNDIP---VEVAMIYNDSYAENLHSYVNNINTHEGGTHLAG 294

Query: 334 LRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F GQTKTKL + +
Sbjct: 295 FRRGLTSSLKKYADASGMLDKLKFEIAGDDFREGLTAIISVKVAEPQFEGQTKTKLGNRE 354

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLP 450
               V  A+ +  + YL ++P +A  +++ VI  ++ R   +K RE+  RKT +    LP
Sbjct: 355 VTSAVSQAVSEMVEIYLEEHPDDAKTIVQKVILAAQARHAAKKAREMVQRKTVMSIGGLP 414

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS+      E+F+VEGDSAGG+AK  R+R+ QA+LPLRGKILNV  A   K+  N
Sbjct: 415 GKLADCSETDPEACEVFLVEGDSAGGTAKMGRDRNFQAILPLRGKILNVEKAMQHKVFEN 474

Query: 511 QQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           ++I ++  ALG    ++   +      LRY+K++IM DADVDG+HIA+L+LTFF++ M +
Sbjct: 475 EEIKNIFTALGVTIGTEEDSKALNLSKLRYKKIVIMCDADVDGSHIATLILTFFFRYMRE 534

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           L+E  H+++ +PPL+ + +G K  YA  E+ + +   +      G + + R+KGLGEM A
Sbjct: 535 LVEGGHVYIATPPLYLLKKGKKMRYAWSEKERDEYNAQMG----GSVSVQRYKGLGEMNA 590

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL +T M+   RTL +V I+       +     + LMG +   R +FI++ A +  ++ 
Sbjct: 591 EQLWDTTMNPEFRTLRQVTIDNGT----EADRIFSMLMGDEVPPRREFIEKNAVYA-NID 645


>gi|226326150|ref|ZP_03801668.1| hypothetical protein COPCOM_03969 [Coprococcus comes ATCC 27758]
 gi|225205692|gb|EEG88046.1| hypothetical protein COPCOM_03969 [Coprococcus comes ATCC 27758]
          Length = 648

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 253/652 (38%), Positives = 380/652 (58%), Gaps = 19/652 (2%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + S  Y A  I+ILEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AGY + I+
Sbjct: 10  NMSAEYGADQIQILEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNSVDEALAGYCDHIQ 69

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V ++ +  +TV+DNGRGIPV  + K      +E++ T LHAGGKF    Y++SGGLHGVG
Sbjct: 70  VFINPDNSITVIDNGRGIPVGINHKA-GLPAVEVVFTVLHAGGKFGGGGYKVSGGLHGVG 128

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFG 217
            SVVNALSD L V +  +  ++ Q++ +G  +  L+  ++    K GT++TF PD  IF 
Sbjct: 129 ASVVNALSDWLEVEICHEGKVYRQRYEKGHVVYKLKVVDECDPEKTGTKVTFLPDETIFE 188

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           D   FD   L +  +  A+L+  ++   +  ++       P++  F++ GG+K ++Q   
Sbjct: 189 DTV-FDYDTLKQRFREMAFLTKGLRISLTDLRDE-----EPKERVFHYEGGIKEFVQYLN 242

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRV 336
            +++ +  +I   +  K       VE A+   +   + T  + N I T EGGTH  G R 
Sbjct: 243 RSKTPLYEQIIYCEGTKDNV---EVEVAMQHNDSYTDNTYGFVNNITTPEGGTHVVGFRN 299

Query: 337 ALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           A+T+    YA   +  +    ++  +D+      I+SV I +P+F GQTK KL + +A+ 
Sbjct: 300 AITKTFNDYARKNKLLKDSEPNLSGEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARG 359

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
            V++ +      +L QNP     ++E  V+ +      R+ +    RK+A+  + LPGKL
Sbjct: 360 AVDSIVSSQLQIFLEQNPAIGKSIVEKSVMAQRAREAARKARDLTRRKSALEGMSLPGKL 419

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS       E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV  A  +KI  N +I
Sbjct: 420 ADCSDKDPSKCEIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDKIYGNAEI 479

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A G      +    LRY K+IIMTDADVDGAHI++LLLTF Y+ M +LI+Q +++
Sbjct: 480 KAMITAFGTGIHDDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPELIKQGYVY 539

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           L  PPL+++ +  K  YA+ +E   KI+ E  +    K  I R+KGLGEM A QL +T M
Sbjct: 540 LAQPPLYKLEKNKKVWYAYSDEELAKIISEVGRDQNNK--IQRYKGLGEMDAEQLWDTTM 597

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D   R L RV ++    +  +   +   LMG K + R +FI+E A F+ ++ 
Sbjct: 598 DPQHRILRRVTMDD--ETSSELDLTFTTLMGDKVEPRREFIEENAKFVKNLD 647


>gi|160878167|ref|YP_001557135.1| DNA gyrase, B subunit [Clostridium phytofermentans ISDg]
 gi|160426833|gb|ABX40396.1| DNA gyrase, B subunit [Clostridium phytofermentans ISDg]
          Length = 642

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 258/650 (39%), Positives = 386/650 (59%), Gaps = 15/650 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S +Y A  I+ILEGLE VR RPGMYIG T  + LHHL  E++DNA+DE +AGY N I+VS
Sbjct: 2   SKDYGADQIQILEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNAVDEALAGYCNTIDVS 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TV+DNGRGIPVE + K    ST+E++ T LHAGGKF    Y++SGGLHGVG S
Sbjct: 62  INPDNSITVIDNGRGIPVETNKK-KGISTVEVVFTILHAGGKFGGGGYKVSGGLHGVGAS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ L VTV  +  ++ Q++  G  + PL    +  ++ GT ++F PD  IF +  
Sbjct: 121 VVNALSEWLEVTVELEGKMYKQRYECGKVIEPLRVVGE-SDRTGTTVSFLPDRSIFEETV 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-YGIPEKEEFYFPGGLKTYLQTKLEN 279
            +D   L +  +  A+L+  +K      +   E+    P  +EF++ GG+K Y+Q   ++
Sbjct: 180 -YDYDILKQRLREMAFLTKGLKIILRDLRTSEEEGNTEPNVKEFHYEGGIKEYVQYLNKH 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +S +  EI   +  +   +   VE A+   +       S+ N I T EGGTH +G + A+
Sbjct: 239 KSNLYPEIIYCEGTRDSVY---VEVAMQHNDSYSESCYSFVNNITTPEGGTHYTGFKNAI 295

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           T+    +A   +       ++  +D+      I+S+ + +P+F GQTK KL + +A+  V
Sbjct: 296 TKTFNDFARQMKFLKDNETNLSGEDIREGLTAIISIKLPDPQFEGQTKQKLGNSEARAAV 355

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
           ++ + +   ++L QNP  A  +LE  +     R   RK R+   RKTA+  + LPGKLAD
Sbjct: 356 DSVVSEQLTYFLEQNPSVAKIILEKAVLAQRARDAARKARDLTRRKTALEGMSLPGKLAD 415

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS       E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV  +  +KI  N +I  
Sbjct: 416 CSDKDPKNCEIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKSRLDKILVNNEIKA 475

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ A G      +    LRY K+IIMTDADVDGAHI++LLLTF Y+ M +LI   +++L 
Sbjct: 476 MITAFGTGISDDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPELIRDGYVYLA 535

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+++ +  +  YA+ +E    IL +  +    K  I R+KGLGEM A QL ET MD 
Sbjct: 536 QPPLYKVEKSKQVWYAYSDEDLNNILLQIGRDQNNK--IQRYKGLGEMDAEQLWETTMDP 593

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +R LLRV++++   +  +   +   LMG   + R +FI+  A ++ ++ 
Sbjct: 594 ERRVLLRVKMDE--ENSSEIDLTFTTLMGDNVEPRREFIEANAKYVKNLD 641


>gi|294677614|ref|YP_003578229.1| DNA topoisomerase IV subunit B [Rhodobacter capsulatus SB 1003]
 gi|3128305|gb|AAC16157.1| DNA gyrase subunit b [Rhodobacter capsulatus SB 1003]
 gi|294476434|gb|ADE85822.1| DNA topoisomerase IV, B subunit [Rhodobacter capsulatus SB 1003]
          Length = 652

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 343/652 (52%), Positives = 449/652 (68%), Gaps = 10/652 (1%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           + + S+ YDASSI +LEGLEPVR RPGMYIGGTDE+ALHH+ +E++DNAMDE +AG+AN 
Sbjct: 7   SSTPSETYDASSIEVLEGLEPVRKRPGMYIGGTDERALHHMVAEILDNAMDEAVAGHANR 66

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV ++ +G +TV DNGRGIPV+ HPKFP KS LE+IL TLHAGGKF N  Y  SGGL+G
Sbjct: 67  IEVEVNADGSVTVRDNGRGIPVDPHPKFPGKSALEVILCTLHAGGKFSNKAYSTSGGLNG 126

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALSD + V VAR   ++ Q+FSRG+P  P+ K     N+RGT +TF PDP+IF
Sbjct: 127 VGSSVVNALSDLMVVQVARNKELYEQRFSRGVPQGPVAKLGAAPNRRGTTVTFHPDPEIF 186

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
           G       ARL KMT+SKAYL   V+  W   K        P +  F+FP GL  YL   
Sbjct: 187 GS-LSLKPARLFKMTRSKAYLFSGVEIRW---KTAIADGDTPTEATFHFPNGLADYLAEA 242

Query: 277 LENRSLISSEIFTG--KTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESG 333
           L   S  S + F G    E+K    G+VEWAI W    +  I SYCNT+ T EGGTHE+G
Sbjct: 243 LTGASTYSDKPFAGRVSFEEKYNIPGSVEWAINWTPVRDGFIHSYCNTVPTPEGGTHEAG 302

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
              A+ +GI+ Y E   NK+A  I  +D++     ++S+FIREP F GQTK +L + +A 
Sbjct: 303 FWAAILKGIRAYGERINNKKAAQITREDMLTGGCALISIFIREPSFVGQTKDRLSTEEAA 362

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
           R VENA+RD FD +L  +   A  +L++++ R+EERLRR+ ++E +RK+A +KLRLPGKL
Sbjct: 363 RWVENAVRDYFDTWLTTDTKAAGAILDFLVLRAEERLRRKAEKETSRKSATKKLRLPGKL 422

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
            DCS     GTELFIVEGDSAGGSAK AR+R+ QA+LPLRGKILNV  A S K+  NQ+I
Sbjct: 423 VDCSATNREGTELFIVEGDSAGGSAKMARDRTMQALLPLRGKILNVLGAASSKLGQNQEI 482

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            DL QALG    +++R +DLRY+K+IIMTDADVDGAHIASLL+TFF+ +M  LI++ HL+
Sbjct: 483 NDLAQALGVGLGTKFRVDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRGLIDKGHLY 542

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           L  PPL+R+TQG K +Y  D+  K   + +    G+GKI++ RFKGLGEM A  LK+T M
Sbjct: 543 LACPPLYRLTQGAKRIYVADDAEKDVWMAK-GLGGRGKIDVQRFKGLGEMDAKDLKDTTM 601

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +   R L+RV I+ +     +T D + +LMG K + RF++I E A F++++ 
Sbjct: 602 NPATRKLIRVTIDDEF--AGETDDLVERLMGKKPELRFQYITENARFVEELD 651


>gi|145577973|gb|ABP82705.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           weihenstephanensis]
          Length = 632

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 259/649 (39%), Positives = 378/649 (58%), Gaps = 21/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V D+GRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSIVVTDDGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R   I  QK+ RG+P + L+   +  ++ GT   F+PD +IF +  
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGVPAADLKVIGET-DRTGTITRFKPDSEIFTETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            ++        +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 EYEFDTSATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E       K G     VE A+ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVDGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFAIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF++ QG K  YA++ +  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKVQQGKKIQYAYNNKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632


>gi|145577993|gb|ABP82715.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar alesti]
          Length = 632

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 263/646 (40%), Positives = 379/646 (58%), Gaps = 21/646 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS++ 
Sbjct: 4   YDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVSIEE 63

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG SVVN
Sbjct: 64  DNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVN 122

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS EL V V R   I  QK+ RGIP++ L+      +K GT   F+PDP+IF +   ++
Sbjct: 123 ALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETTEYE 181

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++  I
Sbjct: 182 FDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSKQPI 235

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGI 342
             E    +  K G     VE A+ + E       S+ N I T EGGTHE G + ALTR I
Sbjct: 236 HEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVI 292

Query: 343 KKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E+  
Sbjct: 293 NDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVF 352

Query: 401 RDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
            + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPGKLADCS  
Sbjct: 353 SEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSK 412

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
               +E++IVEGDSAGGSAKQ R+   QA+LPL+GKI+NV  A  +KI +N ++  ++ A
Sbjct: 413 DPAISEIYIVEGDSAGGSAKQGRDCHFQAILPLKGKIINVEKARLDKILSNDEVRTIITA 472

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           +G      +  E  RY KVIIMTDADVDGAHI +LL TFFY+ M  +IE  ++++  PPL
Sbjct: 473 IGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLFTFFYRYMGQIIECGYIYIAQPPL 532

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           F++ QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET MD   R+
Sbjct: 533 FKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPEVRS 590

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           LL+V +   +    +  ++   LMG K + R  FIQE A F+ ++ 
Sbjct: 591 LLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKFVKNLD 632


>gi|116074377|ref|ZP_01471639.1| DNA topoisomerase IV subunit B [Synechococcus sp. RS9916]
 gi|116069682|gb|EAU75434.1| DNA topoisomerase IV subunit B [Synechococcus sp. RS9916]
          Length = 655

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 264/661 (39%), Positives = 378/661 (57%), Gaps = 18/661 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
                    Y A  I++LEGLEPVR RPGMYIG T  + LHHL  EV+DN++DE +AG+ 
Sbjct: 2   SEASKVQAAYGAEQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALAGHC 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I+V L  +G  +V DNGRGIP + HP+   KS LE +LT LHAGGKF    Y++SGGL
Sbjct: 62  SEIQVVLAEDGSASVTDNGRGIPTDVHPR-TGKSALETVLTVLHAGGKFGAGGYKVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS---PLEKKEKVRNKRGTRITFRP 211
           HGVG+SVVNALS+ + VTV RQ  +  Q+F RG  +      E+  +     GT + F+P
Sbjct: 121 HGVGVSVVNALSEWVEVTVRRQGKVHRQRFERGAAIGSLRSEEQPAEENGLTGTSVCFKP 180

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG-IPEKEEFYFPGGLK 270
           D +IF     FD A L    +  AYL+G V+  +  ++E A      P +E +++ GG+K
Sbjct: 181 DIQIFTGGIVFDYATLAARLRELAYLNGGVRIVFRDEREAARTPEGEPHEEIYFYEGGIK 240

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330
            Y+    + +  +  +I    +EK G  +            +  I  + N I T +GGTH
Sbjct: 241 EYVAYMNKEKDALHPDIIYVNSEKDGV-QVEAALQWCSDAYSDSILGFANNIRTVDGGTH 299

Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             GL+  LTR +  +A+    ++    ++  +++      +LSV + EPEF GQTKTKL 
Sbjct: 300 IEGLKTVLTRTLNAFAKKLGKRKESDSNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLG 359

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447
           + + +  V+N + +    +L  NP     +LE  I+        R+ RE V RK+ +   
Sbjct: 360 NTEVRGIVDNLVGEALSQFLEFNPSVIGLILEKAIQAFNAAEAARRARELVRRKSVLESS 419

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILN+      KI
Sbjct: 420 TLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKI 479

Query: 508 RNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
             N +I  L+ ALG   + +  +   LRY +V+IMTDADVDGAHI +LLLTFFY+   +L
Sbjct: 480 YKNTEIQALITALGLGIKGEDFDVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKEL 539

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           +E  ++++  PPL+++ +G    Y ++E+  QK L  F +  K    I RFKGLGEM+ +
Sbjct: 540 VEGGYIYIACPPLYKVERGKNHTYCYNEQDLQKTLAAFPE--KANYNIQRFKGLGEMMPA 597

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DV 684
           QL ET MD   RT+ RVEI   L    +       LMG K   R +FI+  ++ +D  ++
Sbjct: 598 QLWETTMDPTTRTMKRVEIEDAL----EADRIFTILMGDKVAPRREFIETHSAELDMTNL 653

Query: 685 G 685
            
Sbjct: 654 D 654


>gi|145577963|gb|ABP82700.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar finitimus]
          Length = 632

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 264/649 (40%), Positives = 383/649 (59%), Gaps = 21/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            ++YD S I++LEGLE VR RPGM IG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENSYDESQIQVLEGLEAVRKRPGMCIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R+  I  QK+ RGIP++ L+      ++ GT   F+PDP+IF +  
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E    +  K G     VE ++ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K++E   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF+I QG K  YA++E+  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKIQQGKKIQYAYNEKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENARYVKNLD 632


>gi|145578013|gb|ABP82725.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar graciosensis]
          Length = 632

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 262/649 (40%), Positives = 384/649 (59%), Gaps = 21/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            ++YD S I++LEGLE VR RPGMYIG T  K LHHL   ++DN++DE +AGY + I VS
Sbjct: 1   ENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWGIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R+  I  QK+ RGIP++ L+   +  ++ GT   F+PDP+IF +  
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGET-DQTGTITRFKPDPEIFQETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E    +  K G     VE ++ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K++E   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF++ QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632


>gi|313892202|ref|ZP_07825795.1| DNA gyrase, B subunit [Dialister microaerophilus UPII 345-E]
 gi|313119340|gb|EFR42539.1| DNA gyrase, B subunit [Dialister microaerophilus UPII 345-E]
          Length = 646

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 261/663 (39%), Positives = 377/663 (56%), Gaps = 22/663 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86
               +  A A+     +Y A  IR+LEGLE VR+RPGMYIG T  + LHHL  EV+DN++
Sbjct: 1   MSEENRKAGASGRKDGHYSAKDIRVLEGLEAVRLRPGMYIGSTSARGLHHLVYEVVDNSI 60

Query: 87  DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146
           DE +AG+   IEVSL+ +G  TVVDNGRGIP   H     K  +E++LT LHAGGKF   
Sbjct: 61  DEALAGFCTHIEVSLNDDGSCTVVDNGRGIPTGMHE--TGKPAMEVVLTVLHAGGKFGGE 118

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
            Y ISGGLHGVGISVVNALS+   V V R        F RG     +    +     GT 
Sbjct: 119 GYAISGGLHGVGISVVNALSEWTKVNVRRDGKFHEMAFCRGDVTESMRTYGETSE-TGTT 177

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           +TF+PDP IF +   FD   L    +  A+L+  ++   S +++   +      EEF++ 
Sbjct: 178 VTFKPDPLIFKEGTDFDYDTLKVRMRELAFLNKGLRITLSDNRDGVSRV-----EEFHYA 232

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+  +++   E +  +  ++ + + E+       V+ A+ +       + ++ N I T 
Sbjct: 233 GGIVEFIKFLNEGKDAVHDDVISFEGERDKII---VDIAMQYQTGYSESMYTFVNDINTT 289

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQT 383
           EGG H SG R ALTR I  YA      +    ++  DD+      ++SV +  P+F GQT
Sbjct: 290 EGGMHLSGFRSALTRTINDYARTNNLLKENEDNLTGDDVREGLTCVISVKVPNPQFEGQT 349

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKT 442
           KTKL +L+ +  V+N + +    YL ++P EA  ++E  I  S  R   ++ RE   RK 
Sbjct: 350 KTKLGNLEVKGVVDNIVSEGLHIYLEEHPAEARLIVEKGITASRAREAAKRARELTRRKN 409

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKL+DCS+     TE++IVEGDSAGGSAK  R+R  QA+LPLRGKILNV  A
Sbjct: 410 ALEVSSLPGKLSDCSEKDPKKTEIYIVEGDSAGGSAKSGRDRRYQAILPLRGKILNVEKA 469

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
             +++ N+  I  ++ A G      +    LRY K+IIMTDADVDGAHI +LLLTFFY+ 
Sbjct: 470 RVDRVLNSDTIRMMITAFGTGVSEGFDISKLRYYKIIIMTDADVDGAHIRTLLLTFFYRY 529

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
           M  LI + H+++  PPL+++ +G +  Y +D++ + K+L+E  + G     I R+KGLGE
Sbjct: 530 MKPLITEGHVYIAKPPLYQVRKGRQKYYTYDDDEQNKLLDEIGRDG---CTIQRYKGLGE 586

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           M   QL  T M+  +R ++RVE+   +    +       LMG K + R KFI+E A  + 
Sbjct: 587 MDPEQLWNTTMNPEQRVMMRVELTDAV----EADRLFTILMGDKVEPRRKFIEENAMNVT 642

Query: 683 DVG 685
           ++ 
Sbjct: 643 NLD 645


>gi|325102923|ref|YP_004272577.1| DNA gyrase subunit B [Pedobacter saltans DSM 12145]
 gi|324971771|gb|ADY50755.1| DNA gyrase subunit B [Pedobacter saltans DSM 12145]
          Length = 652

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 266/654 (40%), Positives = 378/654 (57%), Gaps = 20/654 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
             + NY A +I++LEGLE VR RP MYIG T  K LHHL  EV+DN++DE +AGY   I 
Sbjct: 6   EKNSNYSADNIQVLEGLEAVRKRPAMYIGDTGVKGLHHLVYEVVDNSIDEALAGYCTDIL 65

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  N  +TV DNGRGIP   + K  NKS LEI++T LHAGGKFD  TY++SGGLHGVG
Sbjct: 66  VTIHKNNSITVEDNGRGIPTGINKK-ENKSALEIVMTVLHAGGKFDKDTYKVSGGLHGVG 124

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +S VNALS  +   V R+  IF+Q++ RG PL  ++   +  ++ GT  TF+PDP+IF  
Sbjct: 125 VSCVNALSTHVITVVHREGKIFTQEYERGKPLFDVKVIGE-SDRTGTIQTFQPDPEIFTQ 183

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              +    L    +  A+L+  ++   + ++E+ E       EEFY  GGL+ ++     
Sbjct: 184 TTEYRFDTLAGRLRELAFLNKGIRLVLTDEREVKEDG-SFLSEEFYSEGGLREFVTFLDS 242

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            R+ +  +    + EK G     VE A  +       I SY N I T EGG+H +G R  
Sbjct: 243 TRTPLIPDAIYIEGEKNGIP---VELAFTYNNSYNENIHSYVNNINTIEGGSHVAGFRRG 299

Query: 338 LTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +K YAE +   + +   I  DD       ++SV ++EP+F GQTKTKL + +    
Sbjct: 300 LTRTLKSYAEKSGLLKNLKVEITGDDFREGLTAVISVKVQEPQFEGQTKTKLGNTEVTGA 359

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454
           V+ A+ +   ++L +NP EA  ++  VI   +     R+ +  V RK  +    LPGKLA
Sbjct: 360 VDIAVGEALGNFLEENPKEAKLIVNKVILAATARAAARKAREMVQRKNVMGGSGLPGKLA 419

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC+    H  ELF+VEGDSAGG+AKQ RNR  QA+LPL+GKILNV  A   KI  N +I 
Sbjct: 420 DCANKDPHVCELFLVEGDSAGGTAKQGRNRDFQAILPLKGKILNVEKAMEHKIYENDEIK 479

Query: 515 DLVQALGCRT-----RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           ++  ALG          +   E LRY KVIIMTDADVDG+HI +L+LTFF++ M  LIE 
Sbjct: 480 NIFTALGVSIGTAEDEKELNLEKLRYHKVIIMTDADVDGSHITTLILTFFFRYMKQLIEA 539

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQL 628
            ++++ +PPL+++ +G +  Y  ++  +   ++  K  GK   + I R+KGLGEM A QL
Sbjct: 540 GNIYIAAPPLYQVKKGKEFEYCWNDVQRDAAVQRLKGGGKEDSVHIQRYKGLGEMNAEQL 599

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            ET ++   RTL R  I     S  +     + LMG +   R +FI++ A +  
Sbjct: 600 WETTLNPETRTLKRATIE----SAAEADRIFSMLMGDEVAPRREFIEKNARYAK 649


>gi|145577995|gb|ABP82716.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar oswaldocruzi]
          Length = 631

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 263/649 (40%), Positives = 383/649 (59%), Gaps = 22/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            ++YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R+  I  QK+ RGIP++ L+      ++ GT   F+PDP+IF +  
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E    +  K G     VE ++ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K++E   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVE DSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVE-DSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 468

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 469 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQ 528

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF++ QG K  YA++E+  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 529 PPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 586

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 587 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 631


>gi|238915981|ref|YP_002929498.1| DNA gyrase subunit B [Eubacterium eligens ATCC 27750]
 gi|238871341|gb|ACR71051.1| DNA gyrase subunit B [Eubacterium eligens ATCC 27750]
          Length = 644

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 261/656 (39%), Positives = 383/656 (58%), Gaps = 18/656 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            A+Q+A  NY    I++LEGLE VR RPGMYIG T  + LHHL  E++DNA+DE +AG+ 
Sbjct: 1   MADQNAEKNYGGDQIQVLEGLEAVRKRPGMYIGSTSGRGLHHLVYEIVDNAIDEALAGFC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             IEV ++ +  +TV+DNGRG+PV+ + K   +  +E++ T LHAGGKF    Y++SGGL
Sbjct: 61  THIEVMINKDNSITVIDNGRGVPVDINHK-TGRPAIEVVYTVLHAGGKFGGGGYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213
           HGVG SVVNALS+ L V V R   I+ Q++ RG     L+          GT++TF PD 
Sbjct: 120 HGVGASVVNALSEWLEVQVKRNGHIYQQRYERGKICYDLKIVGDCDIEDTGTQVTFLPDS 179

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IF +   F+   L+   +  A+L+  +K   +  +E  E     +++ F++ GG+K ++
Sbjct: 180 EIFQETTVFEFDILMHRLREMAFLTKGIKITLTDLREGLE-----QQKVFHYEGGIKEFV 234

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           Q   +++  + S+I   +  K       VE A    +     + S+ N I T EGGTH +
Sbjct: 235 QYLNKSKEPLYSQIIYCEGVKDNVQ---VEVAFQHNDGYNEVVDSFVNNIKTPEGGTHLT 291

Query: 333 GLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R +LT+    YA   +  +        DD+      I+SV I +P+F GQTK KL + 
Sbjct: 292 GFRNSLTKTFNDYARKNKILKDSDQGLSGDDIREGLTAIVSVKIEDPQFEGQTKQKLGNT 351

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRL 449
            A+  V++ + +   ++L QNP  A  + E  ++ +      R+ +    RKTA+    L
Sbjct: 352 VARGAVDSIVSEQLTYFLEQNPAVAKSICEKSLLAQRAREAARKARDLTRRKTALESTSL 411

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADCS       E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV  A  ++I  
Sbjct: 412 PGKLADCSDKDPKNCEIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARLDRILG 471

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N +I  ++ A G      +    LRY K+IIMTDADVDGAHIA+LLLTF Y+ M DLI +
Sbjct: 472 NAEIKAMITAFGTGIHEDFDISKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPDLIRE 531

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
            H++L  PPL+++ +  K  YA++++    I+ E  +    K  + R+KGLGEM A QL 
Sbjct: 532 GHVYLAQPPLYKVEKNKKVWYAYNDDELNAIMTEIGRDQNNK--VQRYKGLGEMDAEQLW 589

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           ET MD +KR LLRV +N+D     +   + + LMG K + R  FI+  A F+ ++ 
Sbjct: 590 ETTMDPHKRVLLRVNMNED--DDSELDVTFSTLMGDKVEPRRDFIEANAKFVKNLD 643


>gi|299820837|ref|ZP_07052726.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Listeria grayi DSM
           20601]
 gi|299817858|gb|EFI85093.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Listeria grayi DSM
           20601]
          Length = 646

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 243/655 (37%), Positives = 377/655 (57%), Gaps = 20/655 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              QS + +Y+   I++LEGLE VR RPGMYIG T ++ LHHL  E++DNA+DE +AG+ 
Sbjct: 7   TNVQSNASDYNDDQIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVWEIVDNAIDEALAGFC 66

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + IE++++ +  +TV DNGRGIP   + K   + T+E+I T LHAGGKF    Y++SGGL
Sbjct: 67  SEIEITIEEDNSITVRDNGRGIPTGINEKV-GRPTVEVIFTVLHAGGKFGGGGYKVSGGL 125

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS +L V V R    + Q+F +G  +  +E++ +  + RGT + F+PDP+
Sbjct: 126 HGVGASVVNALSTDLEVYVHRDGQKYYQRFEQGNVVMDMEERGET-DYRGTIVHFKPDPE 184

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   FD   L    +  A+L+  ++      +E         ++++++ GG+++Y++
Sbjct: 185 IFTETTVFDFDTLRTRARELAFLNKNLRISIEDKREEH-----QVRKDYHYEGGIRSYVE 239

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333
              +++ +I       + E++      VE ++ +          + N I T EGGTHESG
Sbjct: 240 HLNKSKEVIHEPPIYLEGEREDIM---VEISMQYNTGFASNLISFANNIHTYEGGTHESG 296

Query: 334 LRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            + ALTR I  YA   +  +    ++  +D+      I+S+    P+F GQTKTKL + +
Sbjct: 297 FKTALTRVINDYARRNKLFKDSDDNLSGEDVREGLTAIISIKHPNPQFEGQTKTKLGNSE 356

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLP 450
           A+   +    +  + ++++NP    K++E  V+        +R +    + + +    LP
Sbjct: 357 ARTITDKLFSEALNKFMMENPDVGKKIVEKGVVASRARMAAKRARDVARKTSGLEISNLP 416

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  +KI  N
Sbjct: 417 GKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDKILAN 476

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ M  L++  
Sbjct: 477 EEIRTIFTAMGTGFGGDFNVAKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAG 536

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPL++I  G +  Y + ++     L         K  I R+KGLGEM   QL E
Sbjct: 537 YIYIAQPPLYQIKHGKEVEYVYTDKQLDDYLASIGSD--TKYAIQRYKGLGEMNPEQLWE 594

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T M+   RTLL+V IN  +    D  ++   LMG + + R KFI+E A ++ ++ 
Sbjct: 595 TTMNPEHRTLLQVNINDAI----DADETFEMLMGDRVEPRRKFIEENAQYVKNLD 645


>gi|298374500|ref|ZP_06984458.1| DNA gyrase, B subunit [Bacteroides sp. 3_1_19]
 gi|298268868|gb|EFI10523.1| DNA gyrase, B subunit [Bacteroides sp. 3_1_19]
          Length = 651

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 263/658 (39%), Positives = 388/658 (58%), Gaps = 21/658 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           ++ S  Y A SI++LEGLE VR RP MYIG T EK LHHL  EV+DN++DE +AGY   I
Sbjct: 6   KNTSTEYSADSIQVLEGLEAVRKRPSMYIGDTSEKGLHHLVYEVVDNSIDEALAGYCTYI 65

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +  +TV D+GRGIPV+ H K   KS LE++LT LHAGGKFD  TY++SGGLHGV
Sbjct: 66  DVVINEDNSITVTDDGRGIPVDIHEK-EGKSALEVVLTVLHAGGKFDKGTYKVSGGLHGV 124

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+S VNALS  L   V R   +  Q+FS G PL  ++  +   +K GT I+F+P+  IF 
Sbjct: 125 GVSCVNALSTYLKAEVRRNGKVHMQEFSCGKPLHDVQVIDNT-DKTGTTISFKPNGSIFT 183

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               +    L    +  A+L+  +    +  + + E     + E F+   GLK +++   
Sbjct: 184 VT-EYKYDILATRLRELAFLNAGITLRLTDKRVLKEDG-SFKSEVFHSDEGLKEFVRYID 241

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            ++  +  ++    TEK+G     VE A+ +       + SY N I T EGGTH +G R 
Sbjct: 242 RSKEKLIPDVIHIVTEKQGIP---VEVALTYNTSYNESVFSYVNDINTIEGGTHLAGFRR 298

Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
            LTR +KKYAE ++   K  + I  DD       ++S+ + EP+F GQTKTKL + +   
Sbjct: 299 GLTRTLKKYAEDSKLLEKAKVEIQGDDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVTG 358

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKL 453
            V+ A+ +   +YL ++P EA  +++ VI  ++ R   RK RE+ ++ + +    LPGKL
Sbjct: 359 AVDMAIGEALGYYLEEHPKEAKIIVDKVILAAQARHAARKARELVQRKSPLTGGGLPGKL 418

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS   A   ELF+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV  A   KI  +++I
Sbjct: 419 ADCSSKDAAICELFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMDHKIFESEEI 478

Query: 514 MDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            ++ +A+G    ++        E LRY KVIIMTDADVDG+HIA+L+LTFF++ M  LIE
Sbjct: 479 QNIYRAMGVTVGTEDDPKALNMEKLRYHKVIIMTDADVDGSHIATLILTFFFRRMRSLIE 538

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             +++L +PPL+   +G    Y   E+ +Q+ + ++    +  I   R+KGLGEM   QL
Sbjct: 539 NGYVYLATPPLYLCKKGKVEEYCWTEQQRQQFILKYGGGNENSIHTQRYKGLGEMNDHQL 598

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
            +T M+   RTL ++ I+    +  +       LMG     R +FI+E A++  ++  
Sbjct: 599 WDTTMNPENRTLKQITID----NAAEADQIFAMLMGEDVGPRREFIEENATYA-NIDA 651


>gi|237743164|ref|ZP_04573645.1| DNA gyrase subunit B [Fusobacterium sp. 7_1]
 gi|256027571|ref|ZP_05441405.1| DNA gyrase subunit B [Fusobacterium sp. D11]
 gi|289765530|ref|ZP_06524908.1| subunit B [Fusobacterium sp. D11]
 gi|229433460|gb|EEO43672.1| DNA gyrase subunit B [Fusobacterium sp. 7_1]
 gi|289717085|gb|EFD81097.1| subunit B [Fusobacterium sp. D11]
          Length = 635

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 256/648 (39%), Positives = 378/648 (58%), Gaps = 20/648 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y+A +I +LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AGY + IEV + 
Sbjct: 2   SYEAQNITVLEGLEAVRKRPGMYIGTTSERGLHHLVWEIVDNSVDEALAGYCDKIEVKIL 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  + VVDNGRGIP + HPK+  KS LEI+LT LHAGGKF+N  Y++SGGLHGVG+SVV
Sbjct: 62  PDNIIEVVDNGRGIPTDIHPKY-GKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGVSVV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L V V +  T+  QK+ RG P   ++       N+ GT + F+ D +IF     
Sbjct: 121 NALSEWLEVEVRKNGTVHYQKYHRGKPEEDVKVIGTCDENEHGTTVRFKADGEIFETLV- 179

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L    +  AYL+  +    S  ++  +K      E + F GG+  +L   +++ +
Sbjct: 180 YNYFTLSNRLKELAYLNKGLTIILSDLRKDEKKE-----EIYKFDGGILDFLNEIVKDET 234

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTR 340
            I  + F    E+       V+    +   +N  I S+ N I T EGGTH  G R ALT+
Sbjct: 235 TIIEKPFFVSAEQDNV---GVDVTFTYTTSQNEVIYSFVNDINTHEGGTHVQGFRTALTK 291

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I    +       +   ++ +D+    VGI+S  I +P+F GQTK KL + +    V  
Sbjct: 292 VINDVGKAQGLLKDKDGKLMGNDIREGVVGIISTKIPQPQFEGQTKGKLGNSEVSGIVNT 351

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCS 457
            + +    +L  NP     ++E ++   + R   +K RE+  + + +    LPGKLADC+
Sbjct: 352 VVSNSLKIFLEDNPNITKIIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCT 411

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
              A   E+FIVEGDSAGGSAKQ R+R NQA+LPLRGKI+NV  AG  K   + +I  +V
Sbjct: 412 SKKAEECEIFIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMV 471

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A G      +    LRY K+I+MTDADVDGAHI +L+LTF Y+ M DLI   ++++  P
Sbjct: 472 TAFGTSIGETFDISKLRYGKIILMTDADVDGAHIRTLILTFLYRHMIDLIYGGNVYIACP 531

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+++  G + +YA+++   + IL +  +  K K  I R+KGLGEM   QL ET M+ + 
Sbjct: 532 PLYKVAAGKQIIYAYNDLELKNILGQMNQENK-KYTIQRYKGLGEMNPEQLWETTMNPDG 590

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           R LL+V I+    + ++     +KLMG K + R +FI+E A ++ ++ 
Sbjct: 591 RLLLKVSID----NAREADMLFDKLMGDKVEPRREFIEEHAEYVKNID 634


>gi|240145738|ref|ZP_04744339.1| DNA gyrase, B subunit [Roseburia intestinalis L1-82]
 gi|257202154|gb|EEV00439.1| DNA gyrase, B subunit [Roseburia intestinalis L1-82]
 gi|291536986|emb|CBL10098.1| DNA gyrase subunit B [Roseburia intestinalis M50/1]
 gi|291539810|emb|CBL12921.1| DNA gyrase subunit B [Roseburia intestinalis XB6B4]
          Length = 645

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 264/657 (40%), Positives = 384/657 (58%), Gaps = 19/657 (2%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A       + Y A  I+ILEGLE VR RPGMYIG T  + LHHL  E++DNA+DE +AGY
Sbjct: 2   ATEKIENPNEYGADQIQILEGLEAVRKRPGMYIGSTSARGLHHLVYEIVDNAVDEALAGY 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
              IEV+++ +  +TV D+GRGIPV  + K   KS LE++ T LHAGGKF    Y++SGG
Sbjct: 62  CKNIEVTINPDNSITVEDDGRGIPVGMNHKA-GKSALEVVYTVLHAGGKFGGGGYKVSGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPD 212
           LHGVG SVVNALS +L V V ++  ++ Q +  G P  P++        K GT++TF PD
Sbjct: 121 LHGVGASVVNALSTKLCVEVYKEGQVYFQSYHIGKPDEPVKVIGTCDSEKHGTKVTFHPD 180

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P+IF +   +D   L +  +  A+L+  ++   +  +E +         EF++ GG+K +
Sbjct: 181 PEIFEETV-YDYDTLKQRLRETAFLTKGLRIVLTDTREESH-----HCHEFHYAGGIKEF 234

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHE 331
           +     ++  +  ++   +  + G +   VE A+   +   +   S+ N I+T EGGTH 
Sbjct: 235 VTYLNRSKEALYPDVIYCEGTRDGVY---VEVAMQHNDSYNDATYSFVNNIITPEGGTHL 291

Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G R ALT+    YA   +  +        DD+      I+S+ I EP+F GQTK KL +
Sbjct: 292 AGFRNALTKTFNTYARANKILKDSEPALTGDDIREGLTAIISIKIEEPQFEGQTKQKLGN 351

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLR 448
            +A+  V++ + +   ++L QNP  A  + E  ++ +      R+ +    RKTA+    
Sbjct: 352 SEARGAVDSVVSEQLTYFLEQNPAVAKSICEKSLLAQRAREAARKARDLTRRKTALEGTS 411

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS       E+FIVEGDSAGGSAK AR+R+ QA+LPLRGKILNV  A  +KI 
Sbjct: 412 LPGKLADCSDKDPKNCEIFIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARLDKIY 471

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            N +I  ++ A G      +    LRY+K+IIMTDADVDGAHIA+L+LTF Y+ M +LI+
Sbjct: 472 GNAEIKAMITAFGTGIHEDFDISKLRYDKIIIMTDADVDGAHIATLMLTFLYRFMPELIK 531

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           Q H++L +PPL++I +     YA+D+     IL E  + G  K  I R+KGLGEM A QL
Sbjct: 532 QGHVYLATPPLYKIEKNKNIWYAYDDAELNNILIEIGRDGNNK--IQRYKGLGEMDAEQL 589

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            ET MD  KR L RV I++   +  +   +   LMG K + R +FI+E A ++ ++ 
Sbjct: 590 WETTMDPEKRILKRVMIDE--ENSSEIDVTFTTLMGDKVEPRREFIEENAKYVQNLD 644


>gi|330997801|ref|ZP_08321636.1| DNA gyrase, B subunit [Paraprevotella xylaniphila YIT 11841]
 gi|329569689|gb|EGG51454.1| DNA gyrase, B subunit [Paraprevotella xylaniphila YIT 11841]
          Length = 655

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 263/658 (39%), Positives = 381/658 (57%), Gaps = 26/658 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY ASSI++LEGLE VR RP MYIG   EK LHHL  E +DN++DE +AGY   IEV+++
Sbjct: 10  NYSASSIQVLEGLEAVRKRPAMYIGDISEKGLHHLVYETVDNSIDEALAGYCTHIEVTIN 69

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV DNGRGIPV+ H K  +KS LE+++T LHAGGKFD  +Y++SGGLHGVG+S V
Sbjct: 70  EDNSITVQDNGRGIPVDMHEK-EHKSALEVVMTVLHAGGKFDKGSYKVSGGLHGVGVSCV 128

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  +   V R+  I+ Q++  G PL P++   +    RGTR  F PD  IF     +
Sbjct: 129 NALSTHMLSQVFREGKIYQQEYECGKPLYPVKVVGET-ELRGTRQQFWPDSSIFITTT-Y 186

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L    +  A+L+  +    +  +E  E   +P  E F+   GLK +++    +R  
Sbjct: 187 KYEILANRMRELAFLNAGITIILTDMREKDENG-VPRSETFHSKDGLKEFVRYIDSSRIH 245

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           + +++    TEK+G     +E AI +       I SY N I T EGGTH +G R ALTR 
Sbjct: 246 LFNDVIYLNTEKQGVP---IEVAIMYNNGYTENIHSYVNNINTIEGGTHLAGFRTALTRT 302

Query: 342 IKKYAEL-------TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           +KKYAE           K  + I  +D       ++S+ + EP+F GQTKTKL + +   
Sbjct: 303 LKKYAEDEYAKELEKLEKNKVEISGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVAG 362

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKL 453
            V+ A+ +   +YL ++P EA  +++ VI  +  R+  RK RE  ++ + +    +PGKL
Sbjct: 363 AVQQAVGEALSYYLEEHPKEAKLIVDKVILAATARVAARKARESVQRKSPMSGGGMPGKL 422

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS   A   ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKI NV      K   ++++
Sbjct: 423 ADCSDKDAANCELFIVEGDSAGGSAKQGRSRQYQAILPIRGKIFNVERVMWHKAFEHEEV 482

Query: 514 MDLVQALGCRT-----RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            +++QALG R        +   E LRY KVIIMTDADVDG+HI +LL+T FY+ M +LI+
Sbjct: 483 NNIIQALGVRFGLGEDSKEANYEKLRYYKVIIMTDADVDGSHIDTLLMTLFYRYMPELIQ 542

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           + HL++ +PPL+R  +G    Y + E  + + ++++    +  +   R+KGLGEM   QL
Sbjct: 543 KGHLYIATPPLYRCKKGKIEEYCYTEADRLRFMQQYNNGSEQGMTTQRYKGLGEMNPEQL 602

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
            ET M+   R L +V I              + LMG     R +FI++ A++  ++  
Sbjct: 603 WETTMNPETRLLKQVTIED----AAGADYVFSMLMGEDVGPRREFIEQNATYA-NIDA 655


>gi|167748047|ref|ZP_02420174.1| hypothetical protein ANACAC_02785 [Anaerostipes caccae DSM 14662]
 gi|317472423|ref|ZP_07931748.1| DNA gyrase, subunit B [Anaerostipes sp. 3_2_56FAA]
 gi|167652527|gb|EDR96656.1| hypothetical protein ANACAC_02785 [Anaerostipes caccae DSM 14662]
 gi|316900143|gb|EFV22132.1| DNA gyrase, subunit B [Anaerostipes sp. 3_2_56FAA]
          Length = 640

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 261/652 (40%), Positives = 381/652 (58%), Gaps = 19/652 (2%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
                 Y A  I+ILEGLE VR RPGMYIG T  K LHHL  E++DNA+DE +AGY + I
Sbjct: 3   TEKKGEYGADQIQILEGLEAVRKRPGMYIGSTSAKGLHHLVYEIVDNAVDESLAGYCDTI 62

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V+L+ +  +TV DNGRGIPV  + K    S++E++ T LHAGGKF    Y++SGGLHGV
Sbjct: 63  YVTLNKDNSVTVRDNGRGIPVGMNKK-KGVSSVEVVFTILHAGGKFGGGGYKVSGGLHGV 121

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS+ L V V     I++Q++ +G    PL+   +     GT ++F PD  IF 
Sbjct: 122 GSSVVNALSNWLEVNVHTDGKIYNQRYEKGKVCYPLKVVGET-ELNGTEVSFLPDDTIFE 180

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F+   L +  +  A+L+  ++     D+        P +E F++ GG+K ++    
Sbjct: 181 ETI-FEYKVLRQRLRETAFLTKNLRIILRDDR-----QEEPVEEVFHYEGGIKEFVTYLN 234

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
             +  +  ++   + EK G +   VE A+   +       S+ N I+T EGGTH SG + 
Sbjct: 235 RGKEALYDQVIYCEGEKDGVY---VEVAMQHNDSYNENSLSFVNNIITPEGGTHLSGFKN 291

Query: 337 ALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALT     YA   +  +    ++  +D+      ++S+ + EP+F GQTK KL + +A+ 
Sbjct: 292 ALTTTFNDYARKNKLLKENESNLSGEDIREGLTSVISIKLGEPQFEGQTKQKLGNSEARG 351

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            V + + +   ++L QNP  A  + E  +     R   RK R+   RKTA+    LPGKL
Sbjct: 352 AVNSIVNEQLTYFLEQNPAVAKIICEKAVLAQRARDAARKARDLTRRKTALDGFSLPGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS       E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV  +  +KI  N++I
Sbjct: 412 ADCSDKNPENCEIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKSRLDKILMNKEI 471

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A G      +  E LRY K+IIMTDADVDGAHIA+LLLTFFY+ M DLI++ +++
Sbjct: 472 QAMITAFGTGIHDDFDIEKLRYHKIIIMTDADVDGAHIATLLLTFFYRFMPDLIKEGYVY 531

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           +  PPL+R+ +  K  YA+ ++    I+ E  +    K  I R+KGLGEM A QL +T M
Sbjct: 532 MAQPPLYRVERNKKFWYAYSDQELNNIVNEIGRDNNNK--IQRYKGLGEMDAEQLWDTTM 589

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D +KR LLRV I++D  S  +   +   LMG + + R +FI+  A ++ ++ 
Sbjct: 590 DPDKRVLLRVTIDED--SASEIDLTFTTLMGDQVEPRREFIEANAKYVQNLD 639


>gi|145578019|gb|ABP82728.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           thuringiensis serovar tolworthi]
          Length = 632

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 264/649 (40%), Positives = 382/649 (58%), Gaps = 21/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY +   VS
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDETNVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R+  I  QK+ RGIP++ L+      ++ GT   F+PDP+IF +  
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +D   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E    +  K G     VE ++ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K++E   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF+I QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKIQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632


>gi|167759582|ref|ZP_02431709.1| hypothetical protein CLOSCI_01939 [Clostridium scindens ATCC 35704]
 gi|167662809|gb|EDS06939.1| hypothetical protein CLOSCI_01939 [Clostridium scindens ATCC 35704]
          Length = 644

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 260/656 (39%), Positives = 380/656 (57%), Gaps = 18/656 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              +     Y A  I+ILEGLE VR RPGMYIG T  + LHHL  E++DNA+DE +AG+ 
Sbjct: 1   MGTEKVQHEYGADEIQILEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNAVDEALAGFC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I VS++ +  +TVVDNGRGIPV  + K      +E++ T LHAGGKF    Y++SGGL
Sbjct: 61  DTILVSINKDNSITVVDNGRGIPVGINHKA-GLPAVEVVFTVLHAGGKFGGGGYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213
           HGVG SVVNALSD L V +  +  I+ Q++ RG     L    +   +K GT++TF PD 
Sbjct: 120 HGVGASVVNALSDWLEVEIFSKGKIYKQRYERGKVAQKLAVIGECEPDKTGTKVTFFPDD 179

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF +   FD   L +  +  A+L+  +K     ++   E    P ++ F++ GG+K ++
Sbjct: 180 TIFEET-EFDYDILKQRFREMAFLTKGLKIILRDERPEEE----PIEKVFHYEGGIKQFV 234

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHES 332
           +    +++ +  +I   +    G     VE A+   +   + T  + N I T EGGTH  
Sbjct: 235 EYLNRSKTPLYEDIIYCEGMANGV---AVEVAMQHNDSYSDNTYGFVNNITTPEGGTHIV 291

Query: 333 GLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALT+    YA   +  R    ++  +D+      I+SV I +P+F GQTK KL + 
Sbjct: 292 GFRNALTKTFNDYARKNKLLRDNEPNLSGEDIREGLTAIISVKIEDPQFEGQTKQKLGNS 351

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRL 449
           +A+  V++ + +    YL QNP  A   +E  V+ +      R+ +    RK+A+  + L
Sbjct: 352 EARGAVDSIVSNQLVVYLEQNPSIAKMTIEKSVMAQRAREAARKARDLTRRKSALDGMSL 411

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADCS       E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV  A  +KI  
Sbjct: 412 PGKLADCSDKDPKNCEIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDKIYG 471

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N +I  ++ A G      +    LRY K+IIMTDADVDGAHI++LLLTF Y+ M DLI++
Sbjct: 472 NAEIKAMITAFGTGIHDDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKE 531

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
            ++++  PPL+++ +  K  YA+ +E    IL E  + G  K  I R+KGLGEM A QL 
Sbjct: 532 GYVYMAQPPLYKLEKNKKVWYAYSDEELDGILTEVGRDGNNK--IQRYKGLGEMDAEQLW 589

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +T MD   R LLRV +++   +  +   +   LMG K + R +FI+E A ++ ++ 
Sbjct: 590 DTTMDPEHRVLLRVTMDE--ETTSELDLTFTTLMGDKVEPRREFIEENAKYVKNLD 643


>gi|293400051|ref|ZP_06644197.1| DNA gyrase, B subunit [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306451|gb|EFE47694.1| DNA gyrase, B subunit [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 648

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 258/662 (38%), Positives = 381/662 (57%), Gaps = 21/662 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86
            ++ +     N     +Y A  I++LEGLE VR RPGMYIG T EK LHHL  E++DN++
Sbjct: 4   NQMKEIEEMENIKVDHSYTADDIQVLEGLEAVRKRPGMYIGSTSEKGLHHLVWEIVDNSI 63

Query: 87  DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146
           DE +AG+A  I+++++ +  + V DNGRG+P     K    S +E I T LHAGGKF   
Sbjct: 64  DEALAGFATDIDIAIEKDNIIRVEDNGRGMPTGIVEK-SGISGVETIFTILHAGGKFGGG 122

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
            Y++SGGLHGVG SVVNALS+ L VTV +   I+  +F  G       K     +K G+ 
Sbjct: 123 AYKVSGGLHGVGASVVNALSEWLEVTVYQNGNIYFMRFENGGKAVESLKIIGKTDKHGSM 182

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F+ DP IF +   +D   L    +  A+L+  +K   + ++E   K  +     + + 
Sbjct: 183 VRFKADPTIFTETQVYDFETLNTRIRQLAFLNKSIKLILTDEREEERKEIV-----YKYD 237

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG++ Y++   +N+S +  E+   +  + G      E A+ + +   P I S+CN I T 
Sbjct: 238 GGIRQYVEYLNQNKSPLHEEVVYVEGIEDGIL---AEIALQYNDGYVPNIYSFCNNINTA 294

Query: 326 EGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           EGGTHE G R+ALTR +  YA      K+  ++  DD+      I+SV   +P++ GQTK
Sbjct: 295 EGGTHEDGFRLALTRIVNAYARENGMIKKDETLAGDDVREGLTAIISVKHPDPQYEGQTK 354

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
           TKL + + ++ V + L +  + + ++NP  A  +++  I  S+ R+  +K RE   RK+A
Sbjct: 355 TKLGNSEVRKIVSSILGEQLEKFFLENPDTAKIIIDKCILASKARMAAKKARELTRRKSA 414

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADCS   A   E++IVEGDSAGGSAKQ RN   QA+LPLRGKILNV  A 
Sbjct: 415 LEISSLPGKLADCSSRDASECEIYIVEGDSAGGSAKQGRNSKFQAILPLRGKILNVEKAR 474

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
             +I  N +I  ++ A GC    +     LRY K+IIMTDADVDGAHI +L+LTFFY+ +
Sbjct: 475 LHRIFENNEIRSMITAFGCGIGEEMDISKLRYHKIIIMTDADVDGAHICTLMLTFFYRFL 534

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
             +IE  ++++  PPLF+I +G +  Y +DE  + +++ E  ++    + I R+KGLGEM
Sbjct: 535 RPIIEGGYVYIAMPPLFKIQKGQRIEYVYDESSRDRVIAEMGEN----VSIQRYKGLGEM 590

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
              QL ET MD   RTL +V IN  +    +       LMG +   R +FIQE A + + 
Sbjct: 591 NPEQLWETTMDPAFRTLKKVNINDAM----EADKVFEMLMGEEVGPRREFIQENAVYAE- 645

Query: 684 VG 685
           + 
Sbjct: 646 LD 647


>gi|255994573|ref|ZP_05427708.1| DNA gyrase, B subunit [Eubacterium saphenum ATCC 49989]
 gi|255993286|gb|EEU03375.1| DNA gyrase, B subunit [Eubacterium saphenum ATCC 49989]
          Length = 651

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 263/654 (40%), Positives = 393/654 (60%), Gaps = 21/654 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           ++     Y A  I++LEGLEPVR RPGMYIG T +  LHHL  E++DN++DE +AG+ N 
Sbjct: 13  SEKIDKKYGAEEIQVLEGLEPVRKRPGMYIGSTGKPGLHHLVYEIVDNSIDEALAGHCNE 72

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD-NSTYEISGGLH 155
           I++ ++ +G + V DNGRG+PV+ HPK      +E+I + LHAGGKFD N  Y++SGGLH
Sbjct: 73  IKICINEDGSIRVEDNGRGMPVDIHPKQ-KIPAVEVIHSILHAGGKFDENGGYKVSGGLH 131

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS  + V + R   ++ Q++SRG  ++ LE         G+   F PD +I
Sbjct: 132 GVGASVVNALSSRMEVKIKRNGNLYKQEYSRGKTMTKLEIIGTSTE-TGSITEFMPDDQI 190

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F D   FD   L    +  A+L+  +K      ++  EK        + + GG+K +++ 
Sbjct: 191 FDDI-EFDYDTLNYRFREMAFLNKGLKIQLEDKRKGREKTNT-----YCYEGGIKEFIKY 244

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGL 334
           + +N+  +  +I     +   +    VE AI + +   E   SY N I T EGG H SG 
Sbjct: 245 QNKNKEKLHEDIIFFDKKLDNSQ---VEVAIQYTDRYSETLLSYANNINTTEGGYHLSGF 301

Query: 335 RVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           + ALTR I  YA+  +   +   S++ +D+      I+SV +  P+F GQTKTKL +   
Sbjct: 302 KSALTRVINDYAKKAKLIGENDNSLLGEDVREGLTAIISVKLTNPQFEGQTKTKLGNSFI 361

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
           +  VE A+ +    +L+++P +A  ++E  I+ +  R   +K R+   RKTA+  L LPG
Sbjct: 362 RGVVETAVNENVYAFLIEHPKQAKIIIEKCIKSARVREAAKKARDLTRRKTALDSLALPG 421

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL+DCS+     +E+F+VEGDSAGGSA+Q R+R+ QAVLPLRGKILNV  A  +KI +++
Sbjct: 422 KLSDCSEKDPKLSEIFLVEGDSAGGSARQGRDRNRQAVLPLRGKILNVEKARLDKILSSE 481

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I +++ A GC     +  + LRY K+IIMTDADVDGAHI +LLLTFFY+ M  L+E  H
Sbjct: 482 EIKNMITAFGCGIGDDFELDKLRYHKIIIMTDADVDGAHIRTLLLTFFYRYMMPLVEAGH 541

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           ++   PPL+++ +G K  Y + E  ++K+++   + G GK +I R+KGLGEM  +QL ET
Sbjct: 542 VYAAQPPLYKVKKGKKEYYTYSENEQKKLMKNLAEQG-GKSDIQRYKGLGEMDYNQLWET 600

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD +KRTL+++ +           D    LMG K   R KFI+E A ++ ++ 
Sbjct: 601 TMDYDKRTLIQITVED----ASAADDIFTTLMGDKVPPRKKFIEENARYVKNLD 650


>gi|299143458|ref|ZP_07036538.1| DNA gyrase, B subunit [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298517943|gb|EFI41682.1| DNA gyrase, B subunit [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 639

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 271/656 (41%), Positives = 399/656 (60%), Gaps = 24/656 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            ++ +  Y A  I++L GLEPVR RPGMYIG T  K LHHL  EV+DN++DE +AG  + 
Sbjct: 2   KENKNRQYGAEDIQVLTGLEPVRKRPGMYIGSTGSKGLHHLVYEVVDNSIDEALAGICDH 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V +  +  ++V DNG GIP E HP+   KST+E +LT LHAGGKF+N  Y++SGGLHG
Sbjct: 62  ILVEIYEDNSVSVSDNGSGIPTEIHPQ-TGKSTVETVLTILHAGGKFNNGAYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK-VRNKRGTRITFRPDPKI 215
           VG+SVVNALS EL V V R   I+ QKFSRGI  + L + EK  + + GT+I FRPDP+I
Sbjct: 121 VGVSVVNALSTELIVNVKRNGNIYEQKFSRGIAKTQLIEVEKLKKEETGTKIFFRPDPEI 180

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     F+   L K  +  A+L+  +K  +   +       I + E +++ GG+K++++ 
Sbjct: 181 FDT-VEFEFEILSKRFREMAFLNKGIKIQFIDHR-------IGKDETYHYEGGIKSFVEY 232

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
               ++ I  EI      ++ T    VE A+ + +     I ++ N I T+EGG+H SG 
Sbjct: 233 INRKKTAIHKEIIYIDEIRENT---AVEIALQYTDSYTENILTFANNINTEEGGSHLSGF 289

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR I  Y        ++  ++  +D+     G++SV +  P+F GQTK KL + + 
Sbjct: 290 RSALTRCINDYGRKYNIIKEKEENLSGEDVREGLTGVISVKLPNPQFEGQTKAKLGNSET 349

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
           +  V++++ +    +L +NP  A  +LE  +     R   RK R+   +K  +  + LPG
Sbjct: 350 RGIVDSSVSENLSSFLEENPKVAKTILEKSLSARRAREAARKARDLTRKKNILESMTLPG 409

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC  +    TE+F+VEGDSAGGSAK AR+   QA+LPLRGKI+NV  A  +KI N+ 
Sbjct: 410 KLADCQNSDNETTEIFLVEGDSAGGSAKDARDSVFQAILPLRGKIMNVEKARLDKILNSD 469

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++ A G    S++  ++LRY K+IIMTDADVDGAHI +LLLTFF++ M  LIE+ H
Sbjct: 470 EIKAMITAFGTGIGSEFSIDNLRYNKIIIMTDADVDGAHIMTLLLTFFFRYMRPLIEEGH 529

Query: 572 LFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           +++  PPLF I +GTK++ Y +D+   Q+ L E  +    K +I R+KGLGEM    L E
Sbjct: 530 VYVAQPPLFGILKGTKALRYCYDDRELQRALNELGRD--KKFDIKRYKGLGEMNPEDLWE 587

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           T M+ + R LL+VEI   +    +  ++ + LMG++ + R  FIQE A F++++  
Sbjct: 588 TTMNPDHRILLKVEIKDAI----EADETFSMLMGSEVEPRRDFIQENALFVENIDA 639


>gi|110803693|ref|YP_697357.1| DNA gyrase subunit B [Clostridium perfringens SM101]
 gi|110684194|gb|ABG87564.1| DNA gyrase, B subunit [Clostridium perfringens SM101]
          Length = 638

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 261/651 (40%), Positives = 386/651 (59%), Gaps = 19/651 (2%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +  + NYDAS I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AGY   I
Sbjct: 3   EQNNQNYDASQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNSIDEALAGYCKNI 62

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V +  +  +TVVD+GRG+PV  HPK   K T+E+I+T LHAGGKF    Y++SGGLHGV
Sbjct: 63  KVYIHKDNSITVVDDGRGMPVGIHPKM-GKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGV 121

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS+   V V R   ++ Q + RG  L+ LEK  +     GT++ F+PD +IF 
Sbjct: 122 GASVVNALSELCEVIVTRDGYVWKQSYKRGAVLTGLEKIGEAEG-SGTKVHFKPDHEIFE 180

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   +D   L +  +  A+L+  +      ++E   K      E +++ GG+K+++    
Sbjct: 181 ET-EYDFEILSQRLRELAFLNKGINITLIDEREDEVKE-----EVYHYEGGIKSFVSYLN 234

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRV 336
            N+ ++  E    +  K G     VE ++ + +  N  I ++ N I T EGGTH +G + 
Sbjct: 235 RNKEVLHDEPIYVEGLKDGI---AVEVSLQYHDGFNENIFTFANNIDTVEGGTHLAGFKT 291

Query: 337 ALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y     + +    ++  DD+      ++SV I EP+F GQTKTKL + + + 
Sbjct: 292 ALTRVMNDYGRRFGHLKESDKNLSGDDIREGLTAVVSVKISEPQFEGQTKTKLGNSEVRS 351

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454
            V++   +    +L +NP     ++E  +  S  R   R+ RE+ RK+ + +  LPGKLA
Sbjct: 352 AVDSISGEGISTFLEENPEVGKIIIEKALLASRAREAARRARELTRKSVLERSSLPGKLA 411

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS       E++IVEGDSAGGSAKQ R+R  QA+LPLRGKI+NV     +KI  +  I 
Sbjct: 412 DCSSKDPKECEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKIMNVEKQRLDKILGSDTIR 471

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            +V A+G     ++  E +RY ++IIMTDADVDGAHI +LLLTFFY+ M DL+EQ H+++
Sbjct: 472 SMVTAIGAGIGPEFDIEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMRDLVEQGHVYI 531

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL++I++G +  YA+ +    +I+EEF       + + R+KGLGEM A QL ET MD
Sbjct: 532 AQPPLYKISKGKQERYAYSDAAADEIIEEFGGKD-SSVNVQRYKGLGEMNAGQLWETTMD 590

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              R LLR +I   +       +    LMG K + R +FIQ+ A  + ++ 
Sbjct: 591 PESRILLRADIEDAMV----ADEIFTILMGDKVEPRREFIQKNAKNVSNLD 637


>gi|110799437|ref|YP_694481.1| DNA gyrase subunit B [Clostridium perfringens ATCC 13124]
 gi|168207731|ref|ZP_02633736.1| DNA gyrase, B subunit [Clostridium perfringens E str. JGS1987]
 gi|168215272|ref|ZP_02640897.1| DNA gyrase, B subunit [Clostridium perfringens CPE str. F4969]
 gi|170764021|ref|ZP_02637634.2| DNA gyrase, B subunit [Clostridium perfringens B str. ATCC 3626]
 gi|182420561|ref|ZP_02643926.2| DNA gyrase, B subunit [Clostridium perfringens NCTC 8239]
 gi|182627057|ref|ZP_02954782.1| DNA gyrase, B subunit [Clostridium perfringens D str. JGS1721]
 gi|110674084|gb|ABG83071.1| DNA gyrase, B subunit [Clostridium perfringens ATCC 13124]
 gi|170660917|gb|EDT13600.1| DNA gyrase, B subunit [Clostridium perfringens E str. JGS1987]
 gi|170710064|gb|EDT22246.1| DNA gyrase, B subunit [Clostridium perfringens B str. ATCC 3626]
 gi|170713332|gb|EDT25514.1| DNA gyrase, B subunit [Clostridium perfringens CPE str. F4969]
 gi|177907583|gb|EDT70222.1| DNA gyrase, B subunit [Clostridium perfringens D str. JGS1721]
 gi|182379692|gb|EDT77171.1| DNA gyrase, B subunit [Clostridium perfringens NCTC 8239]
          Length = 638

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 261/651 (40%), Positives = 386/651 (59%), Gaps = 19/651 (2%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +  + NYDAS I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AGY   I
Sbjct: 3   EQNNQNYDASQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNSIDEALAGYCKNI 62

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V +  +  +TVVD+GRG+PV  HPK   K T+E+I+T LHAGGKF    Y++SGGLHGV
Sbjct: 63  KVYIHKDNSVTVVDDGRGMPVGIHPKM-GKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGV 121

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS+   V V R   ++ Q + RG  L+ LEK  +     GT++ F+PD +IF 
Sbjct: 122 GASVVNALSELCEVIVTRDGYVWKQSYKRGAVLTGLEKIGEAEG-SGTKVHFKPDHEIFE 180

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   +D   L +  +  A+L+  +      ++E   K      E +++ GG+K+++    
Sbjct: 181 ET-EYDFEILSQRLRELAFLNKGINITLIDEREDEVKE-----EVYHYEGGIKSFVSYLN 234

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRV 336
            N+ ++  E    +  K G     VE ++ + +  N  I ++ N I T EGGTH +G + 
Sbjct: 235 RNKEVLHDEPIYVEGLKDGI---AVEVSLQYHDGFNENIFTFANNIDTVEGGTHLAGFKT 291

Query: 337 ALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y     + +    ++  DD+      ++SV I EP+F GQTKTKL + + + 
Sbjct: 292 ALTRVMNDYGRRFGHLKESDKNLSGDDIREGLTAVVSVKISEPQFEGQTKTKLGNSEVRS 351

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454
            V++   +    +L +NP     ++E  +  S  R   R+ RE+ RK+ + +  LPGKLA
Sbjct: 352 AVDSISGEGISTFLEENPEVGKIIIEKALLASRAREAARRARELTRKSVLERSSLPGKLA 411

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS       E++IVEGDSAGGSAKQ R+R  QA+LPLRGKI+NV     +KI  +  I 
Sbjct: 412 DCSSKDPKECEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKIMNVEKQRLDKILGSDTIR 471

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            +V A+G     ++  E +RY ++IIMTDADVDGAHI +LLLTFFY+ M DL+EQ H+++
Sbjct: 472 SMVTAIGAGIGPEFDIEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMRDLVEQGHVYI 531

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL++I++G +  YA+ +    +I+EEF       + + R+KGLGEM A QL ET MD
Sbjct: 532 AQPPLYKISKGKQERYAYSDAAADEIIEEFGGKD-SSVNVQRYKGLGEMNAGQLWETTMD 590

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              R LLR +I   +       +    LMG K + R +FIQ+ A  + ++ 
Sbjct: 591 PESRILLRADIEDAMV----ADEIFTILMGDKVEPRREFIQKNAKNVSNLD 637


>gi|318042881|ref|ZP_07974837.1| DNA gyrase subunit B [Synechococcus sp. CB0101]
          Length = 653

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 260/659 (39%), Positives = 372/659 (56%), Gaps = 16/659 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
                    Y A  I++LEGLEPVR RPGMYIG T  + LHHL  EV+DN++DE +AG+ 
Sbjct: 2   SEATKVQAAYGAEQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALAGHC 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I V L+ +G   V DNGRGIP + HP+   KS LE +LT LHAGGKF    Y++SGGL
Sbjct: 62  DQILVVLNEDGSCAVTDNGRGIPTDVHPR-TGKSALETVLTVLHAGGKFGAGGYKVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213
           HGVG+SVVNALS+ + VTV RQ     Q+F RG P+  L  K     ++ GT + F+PD 
Sbjct: 121 HGVGVSVVNALSEWVEVTVHRQGQEHLQRFERGAPIGSLASKPAADPSRTGTSVCFKPDI 180

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG-IPEKEEFYFPGGLKTY 272
           +IF     FD   L    +  AYL+G V+  +  ++  A        +E +++ GG+K Y
Sbjct: 181 EIFTGGIEFDYHTLSARLRELAYLNGGVRIVFRDERPAARNAEGAAHEEIYHYEGGIKEY 240

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHES 332
           +      +  +  +I    +EK G  +            +  I  + N I T +GGTH  
Sbjct: 241 VAYMNAEKDALHPDIIYVNSEKDGV-QVEAALQWCVDAYSDNIFGFANNIRTVDGGTHIE 299

Query: 333 GLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           GL+  LTR +  +A+    ++    ++  +++      +LSV + EPEF GQTKTKL + 
Sbjct: 300 GLKTVLTRTLNAFAKKRGKRKDADANLAGENIREGLTAVLSVKVPEPEFEGQTKTKLGNT 359

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           + +  V++ + +    YL  NP     +LE  I+        R+ RE V RK+ +    L
Sbjct: 360 EVRGIVDSLVGEALSEYLEFNPSVIDLILEKAIQAFNAAEAARRARELVRRKSVLESSTL 419

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILN+      KI  
Sbjct: 420 PGKLADCSSRDPGESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYK 479

Query: 510 NQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           N +I  L+ ALG   + +  +E  LRY +++IMTDADVDGAHI +LLLTFFY+    L+E
Sbjct: 480 NTEIQALITALGLGIKGEEFDEKNLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQKALVE 539

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             ++++  PPL+++ +G    Y ++E   ++++E F +  K    I RFKGLGEM+  QL
Sbjct: 540 GGYIYIACPPLYKVERGKNHSYCYNEGDLKRVVEGFGE--KANYTIQRFKGLGEMMPQQL 597

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685
            ET MD   RT+ RVEI        +       LMG K   R +FI+  ++ +D   + 
Sbjct: 598 WETTMDPTTRTMKRVEIED----AAEADRIFTILMGDKVAPRREFIETHSAELDLAQLD 652


>gi|329121792|ref|ZP_08250408.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Dialister
           micraerophilus DSM 19965]
 gi|327468065|gb|EGF13553.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Dialister
           micraerophilus DSM 19965]
          Length = 646

 Score =  628 bits (1620), Expect = e-178,   Method: Composition-based stats.
 Identities = 260/663 (39%), Positives = 377/663 (56%), Gaps = 22/663 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86
               +  A A+     +Y A  IR+LEGLE VR+RPGMYIG T  + LHHL  EV+DN++
Sbjct: 1   MSEENRKAGASGRKDGHYSAKDIRVLEGLEAVRLRPGMYIGSTSARGLHHLVYEVVDNSI 60

Query: 87  DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146
           DE +AG+   IEVSL+ +G  TVVDNGRGIP   H     +  +E++LT LHAGGKF   
Sbjct: 61  DEALAGFCTHIEVSLNDDGSCTVVDNGRGIPTGMHE--TGRPAMEVVLTVLHAGGKFGGE 118

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
            Y ISGGLHGVGISVVNALS+   V V R        F RG     +    +     GT 
Sbjct: 119 GYAISGGLHGVGISVVNALSEWTKVNVRRDGKFHEMAFCRGDVSESMRTYGETSE-TGTT 177

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           +TF+PDP IF +   FD   L    +  A+L+  ++   S +++   +      EEF++ 
Sbjct: 178 VTFKPDPLIFKEGTDFDYDTLKVRMRELAFLNKGLRITLSDNRDGVSRV-----EEFHYA 232

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+  +++   E +  +  ++ + + E+       V+ A+ +       + ++ N I T 
Sbjct: 233 GGIVEFIKFLNEGKDAVHDDVISFEGERDKII---VDIAMQYQTGYSESMYTFVNDINTT 289

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQT 383
           EGG H SG R ALTR I  YA      +    ++  DD+      ++SV +  P+F GQT
Sbjct: 290 EGGMHLSGFRSALTRTINDYARTNNLLKENEDNLTGDDVREGLTCVISVKVPNPQFEGQT 349

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKT 442
           KTKL +L+ +  V+N + +    YL ++P EA  ++E  I  S  R   ++ RE   RK 
Sbjct: 350 KTKLGNLEVKGVVDNIVSEGLHIYLEEHPSEARLIVEKGITASRAREAAKRARELTRRKN 409

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKL+DCS+     TE++IVEGDSAGGSAK  R+R  QA+LPLRGKILNV  A
Sbjct: 410 ALEVSSLPGKLSDCSEKDPKKTEIYIVEGDSAGGSAKSGRDRRYQAILPLRGKILNVEKA 469

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
             +++ N+  I  ++ A G      +    LRY K+IIMTDADVDGAHI +LLLTFFY+ 
Sbjct: 470 RVDRVLNSDTIRMMITAFGTGVSEGFDISKLRYYKIIIMTDADVDGAHIRTLLLTFFYRY 529

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
           M  LI + H+++  PPL+++ +G +  Y +D++ + K+L+E  + G     I R+KGLGE
Sbjct: 530 MKPLITEGHVYIAKPPLYQVRKGRQKYYTYDDDEQNKLLDEIGRDG---CTIQRYKGLGE 586

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           M   QL  T M+  +R ++RVE+   +    +       LMG K + R KFI+E A  + 
Sbjct: 587 MDPEQLWNTTMNPEQRVMMRVELTDAV----EADRLFTILMGDKVEPRRKFIEENAMNVT 642

Query: 683 DVG 685
           ++ 
Sbjct: 643 NLD 645


>gi|227498783|ref|ZP_03928923.1| type IIA topoisomerase [Acidaminococcus sp. D21]
 gi|226904235|gb|EEH90153.1| type IIA topoisomerase [Acidaminococcus sp. D21]
          Length = 648

 Score =  628 bits (1620), Expect = e-178,   Method: Composition-based stats.
 Identities = 265/665 (39%), Positives = 381/665 (57%), Gaps = 24/665 (3%)

Query: 26  SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNA 85
           + +  +       +    Y A  I++LEGLE VR RP MYIG    + LHHL  EVIDN+
Sbjct: 2   TEKDNEKTIEEEIAVHGEYGAEQIQVLEGLEAVRKRPSMYIGSISARGLHHLVYEVIDNS 61

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AGY + I V +  +  +TVVDNGRGIPVE H     K  +E+++T LHAGGKF +
Sbjct: 62  IDEALAGYCDHILVEIGEDNSITVVDNGRGIPVEMHK--IGKPAIEVVMTILHAGGKFGD 119

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRG 204
             Y++SGGLHGVG+S VNALS  + V V +   I+  +FS+G  + PL  K +      G
Sbjct: 120 GGYKVSGGLHGVGVSCVNALSRRMEVEVKKDGKIYGIEFSKGKTVRPLYVKGECDAKDTG 179

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PD  IF +   +    L    +  A+L+  VK     D+  A+       E F+
Sbjct: 180 TSVHFWPDDTIFTETV-YSYETLKHRIRELAFLNKGVKIELKDDRSGAD-------EIFH 231

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+ ++++   + +  I +     + E++ T    VE A+ + +     I ++ N I 
Sbjct: 232 YEGGIISFVEYINKGKEAIFNTPIYVEGERQDTI---VEVAMQYTDAYTENIYTFVNNIN 288

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAG 381
           T+EGGTH +GL+ ALTR I  YA      +    ++  DD+      +LS+ +REP+F G
Sbjct: 289 TEEGGTHLAGLKQALTRSINDYARKNGLLKDSEENLSGDDVREGLTCVLSLKVREPQFEG 348

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + + +  V+N + D  + Y  +N   A K++E  I  S  R   RK R+   R
Sbjct: 349 QTKTKLGNSEVRGIVDNMVSDALNEYFEENAPTAKKIVEKAILSSRARAAARKARDLTRR 408

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS   A  TE++IVEGDSAGGSAKQ R+R+ QA+LPLRGKILNV 
Sbjct: 409 KSALEVSSLPGKLADCSSKNAEETEIYIVEGDSAGGSAKQGRDRAFQAILPLRGKILNVE 468

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
            A  +K+ NN +I  ++ A GC    ++    +RY K+IIMTDADVDGAHI +LLLTFFY
Sbjct: 469 KARLDKMLNNNEIRSMITAFGCGIGDEFDLSKIRYGKIIIMTDADVDGAHIRTLLLTFFY 528

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           + M  LI   ++F+  PPL+ I  G    YA+ ++  QK L+E  +       + R+KGL
Sbjct: 529 RYMQPLIRNGNVFIAQPPLYLIRTGKNHTYAYSDDELQKKLDEVGRQNNPY--VQRYKGL 586

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GEM   QL ET MD +KRT+L+V +              + LMG K + R +FI+E A  
Sbjct: 587 GEMNPEQLWETTMDPSKRTVLQVHLED----AASADSVFSVLMGDKVEPRRQFIEENAGK 642

Query: 681 IDDVG 685
           + ++ 
Sbjct: 643 VTNLD 647


>gi|18308988|ref|NP_560922.1| DNA gyrase subunit B [Clostridium perfringens str. 13]
 gi|18143663|dbj|BAB79712.1| DNA gyrase subunit B [Clostridium perfringens str. 13]
          Length = 638

 Score =  628 bits (1620), Expect = e-178,   Method: Composition-based stats.
 Identities = 259/651 (39%), Positives = 386/651 (59%), Gaps = 19/651 (2%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +  + NYDAS I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AGY   I
Sbjct: 3   EQNNQNYDASQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNSIDEALAGYCKNI 62

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V +  +  +TVVD+GRG+PV  HPK   K T+E+I+T LHAGGKF    Y++SGGLHGV
Sbjct: 63  KVYIHKDNSVTVVDDGRGMPVGIHPKM-GKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGV 121

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS+   V V R   ++ Q + RG  L+ LE+  +     GT++ F+PD +IF 
Sbjct: 122 GASVVNALSELCEVIVTRDGYVWKQSYKRGAVLTGLERIGEAEG-SGTKVHFKPDHEIFE 180

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   +D   L +  +  A+L+  +      ++E   K      E +++ GG+K+++    
Sbjct: 181 ET-EYDFEILSQRLRELAFLNKGINITLIDEREDEVKE-----EVYHYEGGIKSFVSYLN 234

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRV 336
            N+ ++  E    +  K G     VE ++ + +  N  I ++ N I T EGGTH +G + 
Sbjct: 235 RNKEVLHDEPIYVEGLKDGI---AVEVSLQYHDGFNENIFTFANNIDTVEGGTHLAGFKT 291

Query: 337 ALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y     + +    ++  DD+      ++SV I +P+F GQTKTKL + + + 
Sbjct: 292 ALTRVMNDYGRRFGHLKESDKNLSGDDIREGLTAVVSVKISDPQFEGQTKTKLGNSEVRS 351

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454
            V++   +    +L +NP     ++E  +  S  R   R+ RE+ RK+ + +  LPGKLA
Sbjct: 352 AVDSISGEGISTFLEENPEVGKIIIEKALLASRAREAARRARELTRKSVLERSSLPGKLA 411

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS       E++IVEGDSAGGSAKQ R+R  QA+LPLRGKI+NV     +KI  +  I 
Sbjct: 412 DCSSKDPKECEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKIMNVEKQRLDKILGSDTIR 471

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            +V A+G     ++  E +RY ++IIMTDADVDGAHI +LLLTFFY+ M DL+EQ H+++
Sbjct: 472 SMVTAIGAGIGPEFDIEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMRDLVEQGHVYI 531

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL++I++G +  YA+ +    +I+EEF       + + R+KGLGEM A QL ET MD
Sbjct: 532 AQPPLYKISKGKQERYAYSDAAADEIIEEFGGKD-SSVNVQRYKGLGEMNAGQLWETTMD 590

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              R LLR +I   +       +    LMG K + R +FIQ+ A  + ++ 
Sbjct: 591 PESRILLRADIEDAMV----ADEIFTILMGDKVEPRREFIQKNAKNVSNLD 637


>gi|89890612|ref|ZP_01202122.1| DNA gyrase subunit B [Flavobacteria bacterium BBFL7]
 gi|89517527|gb|EAS20184.1| DNA  gyrase subunit B [Flavobacteria bacterium BBFL7]
          Length = 646

 Score =  628 bits (1620), Expect = e-178,   Method: Composition-based stats.
 Identities = 258/661 (39%), Positives = 387/661 (58%), Gaps = 24/661 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + ++    Y A  I+ LEG+E VRMRP MYIG    + LHHL  EV+DN++DE +AG+ 
Sbjct: 1   MSEENNKSGYGADQIQALEGMEHVRMRPSMYIGDVGVRGLHHLVYEVVDNSIDEALAGHC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           N I V+++ +  +TV D+GRGIPV  H K    S L++++T + AGGKFD  +Y++SGGL
Sbjct: 61  NNITVAINEDNSITVTDDGRGIPVGIHKK-EGVSALQVVMTKIGAGGKFDKDSYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+S VNALSD L  TV R   I+ Q++ RG  + P++      +KRGT +TF PD  
Sbjct: 120 HGVGVSCVNALSDHLKATVYRDGKIWEQEYERGKAMYPVKAIGDT-DKRGTDVTFLPDRS 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     F    L    +  A+L+  +K   +  ++  E       + F    GLK +++
Sbjct: 179 IFTQTTEFSYETLANRLRELAFLNKGIKVILTDKRQKDEDG-NFVTDVFQSEEGLKEFIR 237

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              + R  I +++ + + EK G     VE A+ + +     + SY N I T EGGTH +G
Sbjct: 238 FLDDTRQPIIADVISMEGEKNGIP---VEVAMIYNDSYAENLHSYVNNINTHEGGTHLAG 294

Query: 334 LRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R  LT  +KKYA+ +    K    I  DD       I+SV ++EP+F GQTKTKL + +
Sbjct: 295 FRRGLTSTLKKYADASGLLDKLKFDIAGDDFREGLTAIISVKVQEPQFEGQTKTKLGNRE 354

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLP 450
               V  A+    + YL +NP +A  +++ VI  ++ R   RK RE+  RKT +    LP
Sbjct: 355 VTSAVSQAVSQMLEAYLEENPNDAKTIVQKVILAAQARHAARKAREMVQRKTVMSGGGLP 414

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL+DCS+      E+F+VEGDSAGG+AKQ R+R  QA++PLRGKILNV  A + K+  N
Sbjct: 415 GKLSDCSETDPTLCEVFLVEGDSAGGTAKQGRDREFQAIMPLRGKILNVEKAMTHKVFEN 474

Query: 511 QQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           ++I ++  ALG    ++        E LRY KV+IM DAD+DG+HIA+L+LTFF++ M +
Sbjct: 475 EEIRNIYTALGVTIGTEEDSKALNLEKLRYHKVVIMCDADIDGSHIATLILTFFFRYMRE 534

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           +IE+ ++++ +PPL+ + +G K  YA  ++ +  I + F     G + I R+KGLGEM A
Sbjct: 535 MIEKGYIYIATPPLYLVKKGAKKRYAWSDKERDDIADSFG----GGVNIQRYKGLGEMNA 590

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL +T M+   RTL +V I+    SL +     + LMG +   R +FI++ A +  ++ 
Sbjct: 591 DQLWDTTMNPEFRTLRQVTID----SLPEADRIFSMLMGDEVPPRREFIEKNAIYA-NID 645

Query: 686 T 686
            
Sbjct: 646 A 646


>gi|260655480|ref|ZP_05860968.1| DNA gyrase, B subunit [Jonquetella anthropi E3_33 E1]
 gi|260629928|gb|EEX48122.1| DNA gyrase, B subunit [Jonquetella anthropi E3_33 E1]
          Length = 640

 Score =  628 bits (1620), Expect = e-178,   Method: Composition-based stats.
 Identities = 259/653 (39%), Positives = 387/653 (59%), Gaps = 21/653 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
               A  +Y  S I +LEGLE VR RPGMYIG T  + LHH   E++DN++DE +AGY  
Sbjct: 5   QTPQADSSYGESGIVVLEGLEAVRRRPGMYIGDTTVRGLHHCVYEIVDNSVDESLAGYCG 64

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V D+GRGIPVE H +   KST+E +LT LHAGGKFDN +Y++SGGLH
Sbjct: 65  HITVTIGTDESVSVTDDGRGIPVEIHHQ-TGKSTVETVLTVLHAGGKFDNRSYKVSGGLH 123

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS+ L VTV R    + Q++ RGIP++PL K       RGTR+ F  D +I
Sbjct: 124 GVGVSVVNALSEWLEVTVWRDGYEYFQRYERGIPVAPLAKTLPSTR-RGTRVRFLADSQI 182

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   + A  L+   +  A+L   +       +E        +   F   GG+  +++ 
Sbjct: 183 FDEV-QYSAETLVSRFREMAFLIPGLTITVEDQRE-------GKTWTFCEEGGIAEFVRY 234

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              +R ++  E      E+ G    +VE A  + ++    + S+ N I T EGGTH +GL
Sbjct: 235 LNRDRVVLFPEPLVVSGERDGV---SVEMAFQYTDDYNERLFSFANLIHTVEGGTHVAGL 291

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR + + A       ++  ++  +DL      ++SV +  P+F GQTKTKL +   
Sbjct: 292 RSALTRAVNEGARRAGALREKDENLSGEDLREGLTCVVSVKLSNPQFEGQTKTKLGNGTV 351

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
           + +V++ + D    +  ++      +++  ++  + R   +K RE+ RK+A+  L LPGK
Sbjct: 352 KGSVDSVIYDGLLGHFDEDSSALKPIVDKAVKARQAREAAKKARELVRKSAMSGLSLPGK 411

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS   A   E++IVEGDSAGGSAKQ R+RS QA+LPLRGKILNV  A  +KI ++++
Sbjct: 412 LADCSSKKAEECEVYIVEGDSAGGSAKQGRDRSFQAILPLRGKILNVEKARLDKILSSKE 471

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++QALGC    ++    LRY K+IIMTDADVDGAHI++LLLTFF++ M +L+E+ H+
Sbjct: 472 IRVIIQALGCGIGDEFDLSKLRYHKIIIMTDADVDGAHISTLLLTFFFRHMKELVEEGHV 531

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           +L  PPL+R+  G K  Y + +   + +++ ++  GK    + R+KGLGEM   QL ET 
Sbjct: 532 YLAVPPLYRVQSGKKVDYLYSDRQLRTLMDSYEVEGKS-PAVQRYKGLGEMNPEQLWETT 590

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           MD   R L R++++  +       +  + LMG K + R  FIQ  A  + ++ 
Sbjct: 591 MDPATRLLKRIQVDDAI----AADEYFSILMGDKVEPRRDFIQTHAHEVRNLD 639


>gi|33241245|ref|NP_876187.1| DNA gyrase subunit B [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33238775|gb|AAQ00840.1| DNA gyrase B subunit [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 658

 Score =  628 bits (1620), Expect = e-178,   Method: Composition-based stats.
 Identities = 264/656 (40%), Positives = 374/656 (57%), Gaps = 16/656 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              Q     Y A  I++LEGLEPVR RPGMYIG T  + LHHL  EV+DNA+DE +AG+ 
Sbjct: 5   STVQKVQAAYGAEQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVYEVVDNAVDEALAGHC 64

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           N I V L  +G  ++ DNGRGIP + HPK   KS LE +LT LHAGGKF +  Y++SGGL
Sbjct: 65  NEIVVVLCSDGSASISDNGRGIPTDVHPK-TGKSALETVLTVLHAGGKFGSGGYKVSGGL 123

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP---LEKKEKVRNKRGTRITFRP 211
           HGVG+SVVNALS+ + VTV RQ  I +Q+F RG P+      ++    +   GT++ F+P
Sbjct: 124 HGVGVSVVNALSEWVEVTVRRQGHIHNQRFERGAPIGNLRSTKQPVSEKKLTGTKVNFKP 183

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLK 270
           D  IF     FD + L    +  AYL+G VK  +  ++  +++K     +E +++ GG+K
Sbjct: 184 DTDIFTTGIVFDYSILSSRLRELAYLNGGVKIVFRDERQSVSDKEEKAYEEVYFYEGGIK 243

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330
            Y+      +  +  EI    +EK+G  +            +  I  + N I T +GGTH
Sbjct: 244 EYVAYMNSEKDALHPEIIYVNSEKEGV-QVEAALQWCIDAYSDSILGFANNIRTVDGGTH 302

Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             GL+  LTR +  +A     ++    ++  +++      +LSV + EPEF GQTKTKL 
Sbjct: 303 IEGLKTVLTRTLNSFARKRGKRKDGDSNLAGENIREGLTVVLSVKVPEPEFEGQTKTKLG 362

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447
           + + +  V++ + +    YL  NP     +LE  I+        R+ RE V RK+ +   
Sbjct: 363 NTEVRGIVDSLVGESLAQYLEFNPSVIDLILEKAIQAFNAAEAARRARELVRRKSVLEST 422

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILN+      KI
Sbjct: 423 TLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKI 482

Query: 508 RNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
             N +I  L+  LG   + +      LRY +V+IMTDADVDGAHI +LLLTFFY+   +L
Sbjct: 483 YKNTEIQALITGLGLGIKGEDFSLKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKEL 542

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           +E  ++++  PPL+++ +G    Y ++E   QK +  F +  K    I RFKGLGEM+  
Sbjct: 543 VEGGYVYIACPPLYKVERGKNHTYCYNEGDLQKTITSFGE--KANYTIQRFKGLGEMMPK 600

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           QL ET MD + R + RVEI   L    +       LMG K   R +FI+  +  +D
Sbjct: 601 QLWETTMDPSTRMMKRVEIEDAL----EADRIFTILMGDKVAPRREFIETHSVELD 652


>gi|254465080|ref|ZP_05078491.1| DNA topoisomerase IV, B subunit [Rhodobacterales bacterium Y4I]
 gi|206685988|gb|EDZ46470.1| DNA topoisomerase IV, B subunit [Rhodobacterales bacterium Y4I]
          Length = 652

 Score =  628 bits (1619), Expect = e-178,   Method: Composition-based stats.
 Identities = 349/652 (53%), Positives = 452/652 (69%), Gaps = 10/652 (1%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           +  A+D YDASSI +LEGLEPVR RPGMYIGGTDE+ALHH+ +E++DN+MDE +AG+AN 
Sbjct: 7   STPAADTYDASSIEVLEGLEPVRQRPGMYIGGTDERALHHMVAEILDNSMDEAVAGHANR 66

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV+L  +  +T+ DNGRGIP++ HPKFP+KS LE+IL TLHAGGKF    Y+ SGGLHG
Sbjct: 67  IEVTLHADYSVTISDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQTSGGLHG 126

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALSD + V VA+   +F Q+FSRG+PL P+EK     NKRGT +TF  D +IF
Sbjct: 127 VGSSVVNALSDSMVVQVAKNKELFEQRFSRGLPLGPVEKIGAAPNKRGTFVTFHADEQIF 186

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
           G    F   RL  + +SKAYL   V+  W  + +  E    P +  F+FPGGLK YL   
Sbjct: 187 GS-HRFKPKRLFTLVRSKAYLFSGVEIRWKSEIDDGE---TPTEATFHFPGGLKDYLTEV 242

Query: 277 LENRSLISSEIFTGKTE--KKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESG 333
           L   S+ + + F GK E  +K    G VEWAI W    +    SYCNT+ T EGGTH +G
Sbjct: 243 LGKSSVYADQPFAGKVEFREKFNAPGYVEWAINWTPSRDGFTQSYCNTVPTPEGGTHVAG 302

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
              A+ +GIK Y EL  NK+A +I  DDLM     ++S FI +P F GQTK +L +  A 
Sbjct: 303 FWAAILKGIKAYGELVNNKKAGNITRDDLMAGGCALVSCFIADPAFVGQTKDRLSTESAA 362

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
           + VEN++RD FD++L  +   A  +L+++I R+EERLRR++++E  RK+A +KLRLPGKL
Sbjct: 363 KMVENSVRDHFDNWLAADTKSAGAILDFLILRAEERLRRKQEKETQRKSATKKLRLPGKL 422

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
            DC+     GTELFIVEGDSAGGS K ARNR NQA+LPL+GKILNV  A S K+ +N +I
Sbjct: 423 TDCTSKDRAGTELFIVEGDSAGGSGKGARNRVNQALLPLKGKILNVLGAASNKLGSNAEI 482

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            DL +ALG    S++  +DLRY+K+IIMTDADVDGAHIASLL+TFF+ +M  LI+  HL+
Sbjct: 483 NDLCEALGVGLGSKFNLDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDGGHLY 542

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           L  PPLFR+TQG K VY  DE  + K LE+    GKGKI++SRFKGLGEM A  LKET M
Sbjct: 543 LACPPLFRLTQGAKRVYCLDEAERDKWLEK-GLGGKGKIDVSRFKGLGEMDAKDLKETTM 601

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D   R L+RV I++D     +T D + +LMG K + RF++IQE A F++++ 
Sbjct: 602 DPATRKLIRVTIDEDE--PGETGDLVERLMGKKPELRFQYIQENARFVEELD 651


>gi|72383051|ref|YP_292406.1| DNA gyrase subunit B [Prochlorococcus marinus str. NATL2A]
 gi|72002901|gb|AAZ58703.1| DNA gyrase subunit B [Prochlorococcus marinus str. NATL2A]
          Length = 655

 Score =  628 bits (1619), Expect = e-178,   Method: Composition-based stats.
 Identities = 265/656 (40%), Positives = 377/656 (57%), Gaps = 16/656 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
             +      Y A  I++LEGLEPVR RPGMYIG T  K LHHL  EV+DNA+DE +AG+ 
Sbjct: 2   SKDSKVQAAYGAEQIQVLEGLEPVRKRPGMYIGSTGSKGLHHLVYEVVDNAVDEALAGHC 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I + L  +G  +V DNGRGIP + HP+   KS LE +LT LHAGGKF +  Y++SGGL
Sbjct: 62  DQITILLCEDGSASVSDNGRGIPTDLHPR-TGKSALETVLTVLHAGGKFGSGGYKVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK---EKVRNKRGTRITFRP 211
           HGVGISVVNALS+ + VTV RQ  +  Q+F RG  +  L+ +   +  +N  GT + F+P
Sbjct: 121 HGVGISVVNALSEWVEVTVRRQQQVHFQRFERGASIGSLKSENLSKSDKNLTGTTVCFKP 180

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI-AEKYGIPEKEEFYFPGGLK 270
           D +IF D   F+   L    +  AYL+G V+  +  +++   +    P +E +++ GG+K
Sbjct: 181 DDQIFTDGISFEYGILSSRLRELAYLNGGVRIVFRDERKQSNDSSQTPYEEVYFYEGGIK 240

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330
            Y++   + +  +  EI    +EK G  +            +  I  + N I T +GGTH
Sbjct: 241 EYVEYMTKAKDSLHPEIIYVNSEKDGV-QVEAAMQWCVDAYSDSILGFANNIRTIDGGTH 299

Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             GL+  LTR +  +A+    ++    ++  +++      +LSV + +PEF GQTKTKL 
Sbjct: 300 IEGLKTVLTRTLNSFAKKRGKRKDGDSNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLG 359

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447
           + + +  V++ +      YL  NP     +LE  I+        R+ RE V RK+ +   
Sbjct: 360 NTEVRGIVDSLVGTALSQYLEFNPGVIDLILEKAIQAFNAAEAARRARELVRRKSVLESS 419

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILN+      K+
Sbjct: 420 TLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNIEKTDDAKM 479

Query: 508 RNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
             N +I  L+ ALG   + +  E   LRY +V+IMTDADVDGAHI +LLLTFFY+   DL
Sbjct: 480 YKNTEIQSLITALGLGIKGEDFEVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKDL 539

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           +E  ++++  PPL+++T+G    Y ++E   QK L  F +  K    I RFKGLGEM+  
Sbjct: 540 VEGGYIYIACPPLYKVTRGKNHKYCYNESDMQKTLASFGE--KANYTIQRFKGLGEMMPK 597

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           QL ET MD   R + RVEI   L    +       LMG K   R +FI+  +  +D
Sbjct: 598 QLWETTMDPTTRMMKRVEIEDAL----EADRIFTILMGDKVAPRREFIETHSVDLD 649


>gi|307719919|ref|YP_003875451.1| DNA gyrase subunit B [Spirochaeta thermophila DSM 6192]
 gi|306533644|gb|ADN03178.1| DNA gyrase subunit B [Spirochaeta thermophila DSM 6192]
          Length = 635

 Score =  628 bits (1619), Expect = e-178,   Method: Composition-based stats.
 Identities = 254/648 (39%), Positives = 384/648 (59%), Gaps = 20/648 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y A  I++L+GLEPVR RPGMYIG T E+ LHHL  EV+DN++DE +AG  + IEV ++
Sbjct: 2   SYTAEQIQVLKGLEPVRKRPGMYIGSTGEEGLHHLVYEVVDNSIDEALAGVCSRIEVVIE 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
               +TV D+GRGIPV+ HP+    S LE+++T LHAGGKFD  TY++SGGLHGVG+SVV
Sbjct: 62  PGNVVTVTDDGRGIPVDLHPE-EKVSALELVMTRLHAGGKFDKKTYKVSGGLHGVGVSVV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+   V V R   I  Q++ RG+PL P+E + +      T   F+PD +IF     F
Sbjct: 121 NALSEWCEVEVHRDGKIHVQRYQRGVPLGPVEVRGRTDRTG-TTTRFKPDAEIFETT-EF 178

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L +  +  A+L+  ++      +    K  +     F + GGL+ ++    +NR+ 
Sbjct: 179 SFDILSQRLRELAFLNKGIEIVIRDLRTKRVKEHV-----FKYEGGLREFVAYLNKNRTT 233

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +  E    +  +       VE AI + +       S+ N I T EGGTH  G R ALTR 
Sbjct: 234 LQKEPIYFEGARDHV---EVECAIEYNDSYSETFFSFVNNINTKEGGTHVVGFRSALTRC 290

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +    + ++   K   ++  DD+      +LS+ + EP+F GQTKTKL + D +  VE+ 
Sbjct: 291 LNDLFKQSKFAKKLDDTLSGDDVREGLTAVLSIKVPEPQFEGQTKTKLGNSDVKGIVESF 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458
           + +    +  ++P +   +LE V++ +  R+  RK RE+ R+ + +  + LPGKLADC +
Sbjct: 351 VYEQLQAHFARHPKDGEAILEKVVQAARARIAARKARELARRKSVLESMDLPGKLADCIE 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E+FIVEGDSAGGSAKQ R+R  QA+LPL GK+LNV     EK+  N ++  ++ 
Sbjct: 411 KDPARCEIFIVEGDSAGGSAKQGRDREFQAILPLWGKMLNVEKTRMEKVLTNDKLYPIIA 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           +LG    +++    LRY KVIIM DADVDG+HI +LLLTFFY+ M +L+E+ H+++  PP
Sbjct: 471 SLGTGIGTEFDISRLRYHKVIIMADADVDGSHIRTLLLTFFYRYMKELVERGHVYIAMPP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           L+++       YA+ +E + +ILE F KK+ K +I + R+KGLGEM   QL ET M+   
Sbjct: 531 LYKVWVKNDVEYAYSDEERDRILERFAKKYKKDEINVQRYKGLGEMNPEQLWETTMNPAT 590

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           R ++++ +   +    + ++    LMG +   R KFI+E A F+ ++ 
Sbjct: 591 RNIIQIRVEDAV----EAEEVFTTLMGDQVAPRRKFIEENALFVTNLD 634


>gi|153854251|ref|ZP_01995550.1| hypothetical protein DORLON_01544 [Dorea longicatena DSM 13814]
 gi|149753026|gb|EDM62957.1| hypothetical protein DORLON_01544 [Dorea longicatena DSM 13814]
          Length = 643

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 255/656 (38%), Positives = 374/656 (57%), Gaps = 19/656 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              +     Y A  I+ILEGLE VR RPGMYIG T  + LHHL  E++DNA+DE +AG+ 
Sbjct: 1   MGTEKVQHEYGADEIQILEGLEAVRKRPGMYIGSTSARGLHHLVYEIVDNAVDEALAGFC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I V+++ +  +TV+DNGRGIPV  + K      +E++ T LHAGGKF    Y++SGGL
Sbjct: 61  DTIYVTINKDNSVTVIDNGRGIPVGINHKA-GLPAVEVVFTVLHAGGKFGGGGYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDP 213
           HGVG SVVNALS+ L V +  +  ++ Q++ RG  +  L         K GT++TF PD 
Sbjct: 120 HGVGASVVNALSNWLEVEIYHEGKVYQQRYERGKVMEKLTVIGDCEEEKTGTKVTFLPDD 179

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF     FD   L +  +  A+L+  +K     D+E       P++  F++ GG+K ++
Sbjct: 180 TIFETTI-FDFNVLKQRFREMAFLTKGLKIVLKDDREE-----EPKERTFHYEGGIKEFV 233

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHES 332
                + + +  +I   +         +VE A+   +   + T  + N I T EGGTH  
Sbjct: 234 TYLNRSATPLYEQIIYCEGMVNNV---SVEVAMQHNDSYSDNTYGFVNNITTPEGGTHVV 290

Query: 333 GLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R A+T+    YA   +  R    ++  +D+      I+SV I +P+F GQTK KL + 
Sbjct: 291 GFRNAITKTFNDYARKNKLLRDNEPNLSGEDIREGLTAIISVKIEDPQFEGQTKQKLGNS 350

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRL 449
           +A+  V+N +    + +L QNP     ++E  V+ +      R+ +    RK+A+  + L
Sbjct: 351 EARGAVDNVVSKQLEIFLEQNPAVGKIIVEKSVMSQRAREAARKARDLTRRKSALDNMAL 410

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADCS       E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV  A  +KI  
Sbjct: 411 PGKLADCSDKNPENCEIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDKIYG 470

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N +I  ++ A G      +    LRY K+IIMTDADVDGAHI++LLLTF Y+ M +LI+Q
Sbjct: 471 NAEIKAMITAFGTGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFIYRFMPELIKQ 530

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
            +++L  PPL+++ +  K  YA+ +E    I+ E  + G  K  I R+KGLGEM A QL 
Sbjct: 531 GYVYLAQPPLYKLEKNKKVWYAYSDEELSNIINEVGRDGNNK--IQRYKGLGEMDAEQLW 588

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           ET MD   R LLRV ++    +  +   +   LMG K + R +FI E A ++ ++ 
Sbjct: 589 ETTMDPEHRILLRVTMDD--ETTSELDLTFTTLMGDKVEPRREFIVENAKYVKNLD 642


>gi|169343479|ref|ZP_02864479.1| DNA gyrase, B subunit [Clostridium perfringens C str. JGS1495]
 gi|169298431|gb|EDS80520.1| DNA gyrase, B subunit [Clostridium perfringens C str. JGS1495]
          Length = 637

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 261/651 (40%), Positives = 386/651 (59%), Gaps = 19/651 (2%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +  + NYDAS I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AGY   I
Sbjct: 2   EQNNQNYDASQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNSIDEALAGYCKNI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V +  +  +TVVD+GRG+PV  HPK   K T+E+I+T LHAGGKF    Y++SGGLHGV
Sbjct: 62  KVYIHKDNSVTVVDDGRGMPVGIHPKM-GKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS+   V V R   ++ Q + RG  L+ LEK  +     GT++ F+PD +IF 
Sbjct: 121 GASVVNALSELCEVIVTRDGYVWKQSYKRGAVLTGLEKIGEAEG-SGTKVHFKPDHEIFE 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   +D   L +  +  A+L+  +      ++E   K      E +++ GG+K+++    
Sbjct: 180 ET-EYDFEILSQRLRELAFLNKGINITLIDEREDEVKE-----EVYHYEGGIKSFVSYLN 233

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRV 336
            N+ ++  E    +  K G     VE ++ + +  N  I ++ N I T EGGTH +G + 
Sbjct: 234 RNKEVLHDEPIYVEGLKDGI---AVEVSLQYHDGFNENIFTFANNIDTVEGGTHLAGFKT 290

Query: 337 ALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y     + +    ++  DD+      ++SV I EP+F GQTKTKL + + + 
Sbjct: 291 ALTRVMNDYGRRFGHLKESDKNLSGDDIREGLTAVVSVKISEPQFEGQTKTKLGNSEVRS 350

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454
            V++   +    +L +NP     ++E  +  S  R   R+ RE+ RK+ + +  LPGKLA
Sbjct: 351 AVDSISGEGISTFLEENPEVGKIIIEKALLASRAREAARRARELTRKSVLERSSLPGKLA 410

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS       E++IVEGDSAGGSAKQ R+R  QA+LPLRGKI+NV     +KI  +  I 
Sbjct: 411 DCSSKDPKECEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKIMNVEKQRLDKILGSDTIR 470

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            +V A+G     ++  E +RY ++IIMTDADVDGAHI +LLLTFFY+ M DL+EQ H+++
Sbjct: 471 SMVTAIGAGIGPEFDIEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMRDLVEQGHVYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL++I++G +  YA+ +    +I+EEF       + + R+KGLGEM A QL ET MD
Sbjct: 531 AQPPLYKISKGKQERYAYSDAAADEIIEEFGGKD-SSVNVQRYKGLGEMNAGQLWETTMD 589

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              R LLR +I   +       +    LMG K + R +FIQ+ A  + ++ 
Sbjct: 590 PESRILLRADIEDAMV----ADEIFTILMGDKVEPRREFIQKNAKNVSNLD 636


>gi|149369783|ref|ZP_01889634.1| DNA gyrase subunit B [unidentified eubacterium SCB49]
 gi|149356274|gb|EDM44830.1| DNA gyrase subunit B [unidentified eubacterium SCB49]
          Length = 655

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 257/662 (38%), Positives = 391/662 (59%), Gaps = 24/662 (3%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
             + ++   NY A  I+ LEG+E VRMRP MYIG    + LHHL  EVIDN++DE +AG+
Sbjct: 9   TMSEENKKGNYGADQIQALEGMEHVRMRPSMYIGDVGVRGLHHLVYEVIDNSIDEALAGH 68

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
            + ++V ++ +  +TV DNGRGIPV+ H K    S L++++T + AGGKFD  +Y++SGG
Sbjct: 69  CDTVDVWINEDNSITVRDNGRGIPVDIHKK-EGVSALQVVMTKIGAGGKFDKDSYKVSGG 127

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+S VNALS  L  TV R  +I+ Q++ RG  + P+++     + RGT +TF+PD 
Sbjct: 128 LHGVGVSCVNALSVHLKATVFRNGSIYEQEYERGKAMYPVKQVGSTED-RGTEVTFKPDE 186

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IF     ++   L    +  A+L+  +       +E  E+ G  + E F+   GLK ++
Sbjct: 187 EIFKQTREYNYDTLASRLRELAFLNKGITITLEDKRE-VEEDGSFKGETFHSTEGLKEFV 245

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHES 332
           +    NR ++ +++ + + EK       VE A+ +     E    Y N I T EGGTH S
Sbjct: 246 RFLDGNREMLIADVISMEGEKNDIP---VEVAMVYNTSYNENLHSYVNNINTHEGGTHLS 302

Query: 333 GLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R  LT  +KKYA+ +    K    I  DD       I+SV ++EP+F GQTKTKL + 
Sbjct: 303 GFRRGLTHTLKKYADASGMLDKLKFDISGDDFREGLTAIVSVKVQEPQFEGQTKTKLGNR 362

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRL 449
           +    V  A+ +  ++YL +NP +A  +++ VI  +  R   RK RE+  RKT +    L
Sbjct: 363 EVTSAVSQAVSEMLENYLEENPNDAKTIVQKVILAATARHAARKAREMVQRKTVMSGGGL 422

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV  A   K+  
Sbjct: 423 PGKLSDCSEQDPERCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFE 482

Query: 510 NQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           N++I ++  ALG    ++   +      LRY KV+IM DADVDG+HI++L+LTFF++ M 
Sbjct: 483 NEEIRNIFTALGVTIGTEEDSKALNLSKLRYHKVVIMCDADVDGSHISTLILTFFFRYMR 542

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
           +L+E  ++++ +PPL+ + +G K  YA  +  +  + E+F     G   I R+KGLGEM 
Sbjct: 543 ELVESGYVYIATPPLYLVKKGAKKEYAWSDAERDALNEKFG----GSASIQRYKGLGEMN 598

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           ASQL +T M+ + RTL +V I+       +     + LMG +   R +FI++ A +  ++
Sbjct: 599 ASQLWDTTMNPDFRTLRQVAIDNGT----EADRIFSMLMGDEVPPRREFIEKNAVYA-NI 653

Query: 685 GT 686
             
Sbjct: 654 DA 655


>gi|222148646|ref|YP_002549603.1| DNA topoisomerase IV subunit B [Agrobacterium vitis S4]
 gi|221735632|gb|ACM36595.1| DNA gyrase subunit B [Agrobacterium vitis S4]
          Length = 702

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 442/705 (62%), Positives = 533/705 (75%), Gaps = 27/705 (3%)

Query: 3   DDSIDLFSTLPPQSQGSSE------KLKKSGEIPDSPAFANQSAS--------------- 41
           DD+ DLF+ LP     +++       +  +G  P + A     A                
Sbjct: 2   DDNNDLFAALPSTPAEAAKTQKGAADVTAAGTAPVTAAQPETPAKAVAFGSATPASTGNP 61

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           D+Y ASSIR+LEGLEPVRMRPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+AN I+V L
Sbjct: 62  DDYGASSIRVLEGLEPVRMRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHANFIDVHL 121

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           D  GFLTV DNGRGIPVE HP+ P KSTLE+I+T LHAGGKFD   YE SGGLHGVG+SV
Sbjct: 122 DAEGFLTVSDNGRGIPVELHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVSV 181

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALSD L V VAR   ++ Q+FSRG+PL  LE+   V N+RGTR+ F PDP+IFGD A 
Sbjct: 182 VNALSDLLEVEVARNRKLYRQRFSRGVPLGGLEELGDVHNRRGTRVRFHPDPQIFGDHAK 241

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
           FD  R+ +M +SKAYL G V+  WSCD   +     IP+K  F+FPGGLK YL   L   
Sbjct: 242 FDPGRIFRMARSKAYLFGGVEIRWSCDPAILTTGGDIPDKAVFHFPGGLKDYLAATLGKE 301

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
             ++ EIF GKTEK G H G +EWAI W   +P++ SYCNTI T EGGTHE+GLR+ALT+
Sbjct: 302 FTVTREIFAGKTEKTGGH-GAMEWAITWYGGDPQVHSYCNTIPTPEGGTHEAGLRIALTK 360

Query: 341 GIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
           G+K YAELTQNKRA  I +DD+MISAVG+LSVFIREPEF GQTK KL +++AQR VENAL
Sbjct: 361 GLKNYAELTQNKRAQQISTDDVMISAVGMLSVFIREPEFVGQTKDKLATVEAQRLVENAL 420

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
           RDPFDHYL  NP EA KLL+WVIER+EERLRRRK++EVNRKTA+RKLRLPGKLADC+QN 
Sbjct: 421 RDPFDHYLADNPNEAAKLLDWVIERAEERLRRRKEKEVNRKTAVRKLRLPGKLADCAQNT 480

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
           A G ELFIVEGDSAGGSAKQARNRSNQA+LPLRGKILNV SA  EK+  NQQI DL+QAL
Sbjct: 481 AEGAELFIVEGDSAGGSAKQARNRSNQAILPLRGKILNVGSASREKLMANQQIADLIQAL 540

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           GC TR++YR+EDLRYE+++IMTDADVDGAHIASLL+TFFYQEM +LI   HL+L  PPL+
Sbjct: 541 GCGTRTKYRDEDLRYERIVIMTDADVDGAHIASLLITFFYQEMPELIRGNHLYLAVPPLY 600

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
            I QG K+VYA D+ H+ +++E   K    K+EI RFKGLGEM+ +QLKET MD  KR L
Sbjct: 601 VIRQGAKTVYARDDAHRAELMETTFK--GKKVEIGRFKGLGEMMPAQLKETTMDPAKRML 658

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           L+VEI+      + T+D+++ LMGTK + RF+FIQERA+F +++ 
Sbjct: 659 LKVEIDDV--DFEGTRDAVDALMGTKPEARFRFIQERAAFAENLD 701


>gi|283768639|ref|ZP_06341551.1| DNA gyrase, B subunit [Bulleidia extructa W1219]
 gi|283105031|gb|EFC06403.1| DNA gyrase, B subunit [Bulleidia extructa W1219]
          Length = 659

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 246/647 (38%), Positives = 382/647 (59%), Gaps = 20/647 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y+   I++LEGLE VR RPGMYIG T    LHHL  E++DN +DE +AGYA+ +E+++D 
Sbjct: 27  YEDEDIQVLEGLEAVRKRPGMYIGSTSSVGLHHLVWEIVDNGIDEAMAGYASQVEITVDE 86

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +  ++V D+GRG+P   + K    ST+E I T LHAGGKF    Y++SGGLHGVG S VN
Sbjct: 87  DNIVSVEDDGRGMPTGMNEK-TGISTIETIFTVLHAGGKFGGGAYKVSGGLHGVGASAVN 145

Query: 164 ALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAG 221
           ALS+ L VTV  + +++  +F  G  P+ PL+       +K G+ + F+ DP IF +   
Sbjct: 146 ALSEFLEVTVYHEGSVYFVRFENGGHPVEPLKVIGTCDVDKHGSLVRFKADPTIFTETTV 205

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +D   L    +  A+L+  ++  +   +   E        +++F GGLK Y++   EN+ 
Sbjct: 206 YDFNILRNRIRQLAFLNKGIRIKFHDLR---EVNFEKRDHDYFFEGGLKEYVKFINENKD 262

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            +  ++   +  +       VE A  +     P I ++CN I T +GGTHE G R+ALTR
Sbjct: 263 KVHEDVIYSEGYEDNIQ---VEVACQYNTSYNPSIYTFCNNITTVDGGTHEEGFRMALTR 319

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            + KYA       ++  ++  +D       I+SV   +P++  QTK+KL + + ++ V +
Sbjct: 320 IVNKYARENNFLKEKDENVTQEDCKEGLTAIISVKHPDPQYISQTKSKLTNSEVRKIVSD 379

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
                F+ +L++NP +A  ++E ++  S+ RL  ++ +E+ RK++I+   LPGKL+DCS 
Sbjct: 380 IFGTQFERFLMENPNQAKAIMEKIVIASQARLAAKRAKEITRKSSIKVGSLPGKLSDCSS 439

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+++VEGDSAGGSAK  R+   QA+LPLRGKILNV     EK   NQ+I  ++ 
Sbjct: 440 KDPSISEIYLVEGDSAGGSAKNGRDSHFQAILPLRGKILNVEKTRPEKAFENQEIRSMIT 499

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A G   + +     LRY K++IMTDADVDGAHI +LLLTFFY+ +  ++EQ ++++  PP
Sbjct: 500 AFGAGVQDEVDTSKLRYHKIVIMTDADVDGAHIRTLLLTFFYRFLRPVLEQGYVYIAQPP 559

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           LF++ +G    YA+ +   +++  E  +    ++ I R+KGLGEM ASQL ET MD   R
Sbjct: 560 LFKVQKGQSVRYAYTDRQLEELKAEMGE----RLSIQRYKGLGEMDASQLWETTMDPKSR 615

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           TL+RV I       +    + + LMG + + R  FI E A F++++ 
Sbjct: 616 TLIRVTIED----AEYADQNFSMLMGEEVEPRKNFILENAHFVENLD 658


>gi|237741012|ref|ZP_04571493.1| DNA gyrase subunit B [Fusobacterium sp. 4_1_13]
 gi|229431056|gb|EEO41268.1| DNA gyrase subunit B [Fusobacterium sp. 4_1_13]
          Length = 635

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 256/648 (39%), Positives = 379/648 (58%), Gaps = 20/648 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y+A +I +LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AGY + IEV + 
Sbjct: 2   SYEAQNITVLEGLEAVRKRPGMYIGTTSERGLHHLVWEIVDNSVDEALAGYCDKIEVKIL 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  + V+DNGRGIP + HPK+  KS LEI+LT LHAGGKF+N  Y++SGGLHGVG+SVV
Sbjct: 62  PDNIIEVIDNGRGIPTDIHPKY-GKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGVSVV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAG 221
           NALS+ L V V +  TI  QK+ RG P   ++       N+ GT + F+ D +IF     
Sbjct: 121 NALSEWLEVEVRKNGTIHYQKYHRGKPEEDVKIIGACDVNEHGTIVRFKADAEIFETLI- 179

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L    +  AYL+  +    S  ++  +K      E + F GG+  +L   +++ +
Sbjct: 180 YNYFTLSNRLKELAYLNKGLTITLSDLRKDEKKE-----ETYKFDGGILDFLNEIVKDDT 234

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTR 340
            I  + F   +E+       V+    +   +N  I S+ N I T EGGTH  G R ALT+
Sbjct: 235 TIIEKPFYVSSEQDNV---GVDVTFTYTTSQNEVIYSFVNNINTHEGGTHVQGFRTALTK 291

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I    +       +   ++ +D+    VGI+S  I +P+F GQTK KL + +    V  
Sbjct: 292 VINDVGKAQGLLKDKDGKLMGNDIREGVVGIVSTKIPQPQFEGQTKGKLGNSEVSGIVNT 351

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCS 457
            + +    +L  NP     ++E ++   + R   +K RE+  + + +    LPGKLADC+
Sbjct: 352 IVSNSLKIFLEDNPNITKVIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCT 411

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
              A   E+FIVEGDSAGGSAKQ R+R NQA+LPLRGKI+NV  AG  K   + +I  +V
Sbjct: 412 SKKAEECEIFIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMV 471

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A G      +    LRY K+I+MTDADVDGAHI +L+LTF Y+ M DLI   ++++  P
Sbjct: 472 TAFGTSIGETFDISKLRYGKIILMTDADVDGAHIRTLILTFLYRYMIDLIYAGNVYIACP 531

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+++  G + VYA+++   + +L +  +  K K  I R+KGLGEM   QL ET M+ + 
Sbjct: 532 PLYKVASGKQIVYAYNDLELKNVLGQMNQDNK-KYTIQRYKGLGEMNPEQLWETTMNPDG 590

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           R LL+V I+    + ++     +KLMG K + R +FI+E A ++ ++ 
Sbjct: 591 RLLLKVSID----NAREADMLFDKLMGDKVEPRREFIEEHAEYVKNID 634


>gi|225619544|ref|YP_002720801.1| D Gyrase B subunit [Brachyspira hyodysenteriae WA1]
 gi|10644698|gb|AAG21374.1|AF288224_1 DNA Gyrase B subunit [Brachyspira hyodysenteriae]
 gi|225214363|gb|ACN83097.1| D Gyrase B subunit [Brachyspira hyodysenteriae WA1]
          Length = 636

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 256/652 (39%), Positives = 376/652 (57%), Gaps = 23/652 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +A   Y + +I++LEGL+PVR RPGMYIG T  + LHHL  EV+DN++DE +AGY   I 
Sbjct: 2   AAEKTYSSKNIQVLEGLDPVRKRPGMYIGSTGAQGLHHLVYEVVDNSIDEAMAGYCKNIT 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++     + V D+GRGIPV+ HPK    S LE+++T LHAGGKFDN TY++SGGLHGVG
Sbjct: 62  VTIKKGNIIQVEDDGRGIPVDMHPKL-KISALEVVMTKLHAGGKFDNETYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS EL   V +   ++ Q + RGIP  P+++      K GT +TF+ D +IF  
Sbjct: 121 VSVVNALSTELIAEVNKDGKLYRQVYHRGIPEEPVKEVG-TSKKTGTTVTFKADDEIFET 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              +D   L    +  A+L+  ++     ++E            FY+ GG++ ++    E
Sbjct: 180 TV-YDYKILANRLRELAFLNRGIRITLKDEREAEVVSNE-----FYYEGGIEMFITHLNE 233

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N+  +  +       +  T    VE A+ + +     I +YCN I T EGGTH  G R A
Sbjct: 234 NKKALHDKPIYLHKNEDKT---DVEVAMQYVDAYNENIFTYCNNINTTEGGTHLVGFRTA 290

Query: 338 LTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR    +A+      K  I+ + +D     V ++SV I  P+F GQTKTKL + + +  
Sbjct: 291 LTRVYTDFAKKLELDKKNKITFMGEDTREGLVAVVSVKIPNPQFEGQTKTKLGNTEVRAV 350

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454
            E  + +  + Y  QNP     +LE +I  ++ R   RK R+   RK A+    LPGKLA
Sbjct: 351 TEKLVVEGLNDYFSQNPKVIKAILEKIISAAQAREAARKARDLARRKNALESDSLPGKLA 410

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS+      E+++VEGDSAGG+AK  R+R  QA+LPLRGK+LNV  A  +KI +N+ + 
Sbjct: 411 DCSEQEVDKCEVYLVEGDSAGGTAKGGRDRHFQAILPLRGKVLNVEKARLDKIIDNESLK 470

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++ ALGC   + +    +RY +VIIM DAD+DG+HI +LLLTFF++ M  LI+  H+F+
Sbjct: 471 PIIAALGCGVGASFDISKIRYGRVIIMADADIDGSHIRTLLLTFFFRYMRPLIDLGHIFI 530

Query: 575 ISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
             PPL++I+   K+  YA+ +E + KIL E   +   K +I R+KGLGEM A QL ET M
Sbjct: 531 AVPPLYKISFDKKNFLYAYSDEQRDKILAE---NKDRKYDIQRYKGLGEMNADQLWETTM 587

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +   R + +V         +      + LMG +   R  FI+  A ++ ++ 
Sbjct: 588 NPETRLMYQV----LTEDAEKADQLFSMLMGDEVKPRRDFIESNARYVKNLD 635


>gi|124008106|ref|ZP_01692804.1| DNA gyrase, B subunit [Microscilla marina ATCC 23134]
 gi|123986354|gb|EAY26167.1| DNA gyrase, B subunit [Microscilla marina ATCC 23134]
          Length = 659

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 266/669 (39%), Positives = 379/669 (56%), Gaps = 22/669 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86
            E  ++   A  + +  Y A +IR LEGLE VRMRP MYIG    + LHHL  EV+DN++
Sbjct: 2   SEFTENQNGAVDAKNSEYSADNIRALEGLEAVRMRPSMYIGDVGVRGLHHLIWEVVDNSI 61

Query: 87  DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146
           DE +AGY + I V ++ +  +TV DNGRGIP   + +    S LE+++T LHAGGKFD  
Sbjct: 62  DEALAGYCDHITVEVNTDNSITVTDNGRGIPTGFNSQMQK-SALEVVMTVLHAGGKFDKD 120

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           TY++SGGLHGVG+S VNALS  L  TV R+  IF Q++ +G P + +E   +  +K GT 
Sbjct: 121 TYQVSGGLHGVGVSCVNALSTLLRATVHREGKIFQQEYKQGDPQTEVEVIGE-SDKTGTV 179

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F PD  IF     +    + +  +  +YL+  ++      +   E       E+F   
Sbjct: 180 IHFVPDATIFTA-IEYKYETISQRLRELSYLNKGIRLTMVDHRVKGEDG-KALTEDFLSE 237

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTD 325
           GGL  +++   E R     E    + EK G     V+ A  +     E   SY N I T 
Sbjct: 238 GGLTEFVRYLDETRQSFLPEPIYVEGEKSGVP---VQVAFTYNHSYSENVYSYVNNINTI 294

Query: 326 EGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           EGGTH SG R ALTR +K YA+      K  + +  DD       ++SV + EP+F GQT
Sbjct: 295 EGGTHISGFRRALTRTLKSYADKEGMLEKAKVDVTGDDFREGLTAVISVKVAEPQFEGQT 354

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKT 442
           KTKL + +    V+NA  +    +L +NP +A  +++ VI  ++ R   RK RE+  RK 
Sbjct: 355 KTKLGNSEVMGVVDNATSEALSKFLEENPKQAKSIIQKVILAAQARHAARKAREMVQRKN 414

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
            +    LPGKLADCS+      EL++VEGDSAGGSAKQ R+R+ QA+LPLRGKILNV  A
Sbjct: 415 VLSGSGLPGKLADCSEKDPGLCELYLVEGDSAGGSAKQGRDRNTQAILPLRGKILNVEKA 474

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLT 557
              KI +N++I +++ ALG              E LRY K+IIMTDADVDG+HI +L+LT
Sbjct: 475 QEYKIYDNEEIKNIITALGVTFGKDDDDKALNMEKLRYHKIIIMTDADVDGSHIRTLILT 534

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISR 616
           FF++ M DLIE  ++++  PP + + +G K +YA +++ +   ++E   +GK   + + R
Sbjct: 535 FFFRYMRDLIESGYVYIALPPFYLVKKGKKELYAWNDDDRDVAIKELAGNGKPESVHVQR 594

Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           +KGLGEM   QL ET M+   R+L +V I     S        + LMG     R +FI+E
Sbjct: 595 YKGLGEMNPEQLWETTMNPENRSLKQVTIE----SAAGADHLFSMLMGDDVPPRREFIEE 650

Query: 677 RASFIDDVG 685
            A +  +V 
Sbjct: 651 NAKYA-NVD 658


>gi|78211642|ref|YP_380421.1| DNA gyrase subunit B [Synechococcus sp. CC9605]
 gi|78196101|gb|ABB33866.1| DNA gyrase, B subunit [Synechococcus sp. CC9605]
          Length = 655

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 266/654 (40%), Positives = 378/654 (57%), Gaps = 16/654 (2%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
                + Y A  I++LEGLEPVR RPGMYIG T  + LHHL  EV+DN++DE +AG+ + 
Sbjct: 4   ASKVQNAYGAEQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALAGHCDR 63

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V L  +G  +V DNGRGIP + HP+   KS LE +LT LHAGGKF    Y++SGGLHG
Sbjct: 64  IVVVLGEDGSASVSDNGRGIPTDVHPR-TGKSALETVLTVLHAGGKFGAGGYKVSGGLHG 122

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV---RNKRGTRITFRPDP 213
           VG+SVVNALS+ + VTV RQ  +  Q+F RG  +  L  + +      + GT + F+PD 
Sbjct: 123 VGVSVVNALSEWVQVTVRRQGQVHRQRFERGAAIGVLASESQPAAESGETGTTVCFKPDL 182

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA-EKYGIPEKEEFYFPGGLKTY 272
           +IF     FD A L    +  AYL+G V+  +  ++E A +  G P +E +++ GG+K Y
Sbjct: 183 EIFTGGIVFDYATLSARLRELAYLNGGVRIVFRDERESARDGEGNPHEETYFYEGGIKEY 242

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHES 332
           +    + +  +  +I    +EK G  +            +  I  + N I T +GGTH  
Sbjct: 243 VAYMNKEKDALHPDIIYVNSEKDGV-QVEAALQWCSDAYSDSILGFANNIRTVDGGTHIE 301

Query: 333 GLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           GL+  LTR +  +A+    ++    ++  +++      +LSV + EPEF GQTKTKL + 
Sbjct: 302 GLKTVLTRTLNAFAKKLGKRKESDSNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLGNT 361

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           + +  V+N + +    +L  NP     +LE  I+        R+ RE V RK+ +    L
Sbjct: 362 EVRGIVDNLVGEALSQFLEFNPSVIGLILEKAIQAFNAAEAARRARELVRRKSVLESSTL 421

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILN+      KI  
Sbjct: 422 PGKLADCSSRDPGESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYK 481

Query: 510 NQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           N +I  L+ ALG   + +  +   LRY +V+IMTDADVDGAHI +LLLTFFY+   +L+E
Sbjct: 482 NTEIQALITALGLGIKGEDFDVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKELVE 541

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             ++++  PPL+++ +G    Y ++E   QK LE F +  K    I RFKGLGEM+  QL
Sbjct: 542 GGYIYIACPPLYKVERGKNHTYCYNEGDLQKTLEGFGE--KANYTIQRFKGLGEMMPKQL 599

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            ET MD   RT+ RVEI   L    +       LMG K   R +FI+  ++ +D
Sbjct: 600 WETTMDPTTRTMKRVEIEDAL----EADRIFTILMGDKVAPRREFIETHSAELD 649


>gi|124026793|ref|YP_001015908.1| DNA gyrase subunit B [Prochlorococcus marinus str. NATL1A]
 gi|123961861|gb|ABM76644.1| DNA gyrase, subunit B [Prochlorococcus marinus str. NATL1A]
          Length = 655

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 264/656 (40%), Positives = 378/656 (57%), Gaps = 16/656 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
             +    + Y A  I++LEGLEPVR RPGMYIG T  K LHHL  EV+DNA+DE +AG+ 
Sbjct: 2   SKDSKVQEAYGAEQIQVLEGLEPVRKRPGMYIGSTGSKGLHHLVYEVVDNAVDEALAGHC 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I + L  +G  +V DNGRGIP + HP+   KS LE +LT LHAGGKF +  Y++SGGL
Sbjct: 62  DQITILLCEDGSASVSDNGRGIPTDLHPR-TGKSALETVLTVLHAGGKFGSGGYKVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK---EKVRNKRGTRITFRP 211
           HGVGISVVNALS+ + VTV RQ  +  Q+F RG  +  L+ +   +  +N  GT + F+P
Sbjct: 121 HGVGISVVNALSEWVEVTVRRQQQVHFQRFERGASIGSLKSENLSKSDKNLTGTTVCFKP 180

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI-AEKYGIPEKEEFYFPGGLK 270
           D +IF D   F+   L    +  AYL+G V+  +  +++   +    P +E +++ GG+K
Sbjct: 181 DDQIFTDGISFEYGILSSRLRELAYLNGGVRIVFRDERKQSNDSSQTPHEEVYFYEGGIK 240

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330
            Y++   + +  +  EI    +EK G  +            +  I  + N I T +GGTH
Sbjct: 241 EYVEYMTKAKDSLHPEIIYVNSEKDGV-QVEAAMQWCVDAYSDSILGFANNIRTIDGGTH 299

Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             GL+  LTR +  +A+    ++    ++  +++      +LSV + +PEF GQTKTKL 
Sbjct: 300 IEGLKTVLTRTLNSFAKKRGKRKDGDSNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLG 359

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447
           + + +  V++ +      YL  NP     +LE  I+        R+ RE V RK+ +   
Sbjct: 360 NTEVRGIVDSLVGTSLSQYLEFNPNVIDLILEKAIQAFNAAEAARRARELVRRKSVLESS 419

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILN+      K+
Sbjct: 420 TLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNIEKTDDAKM 479

Query: 508 RNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
             N +I  L+ ALG   + +  E   LRY +V+IMTDADVDGAHI +LLLTFFY+   DL
Sbjct: 480 YKNTEIQSLITALGLGIKGEDFEVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKDL 539

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           +E  ++++  PPL+++T+G    Y ++E   QK L  F +  K    I RFKGLGEM+  
Sbjct: 540 VEGGYIYIACPPLYKVTRGKNHKYCYNESDMQKTLASFGE--KANYTIQRFKGLGEMMPK 597

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           QL +T MD   R + RVEI   L    +       LMG K   R +FI+  +  +D
Sbjct: 598 QLWDTTMDPTTRMMKRVEIEDAL----EADRIFTILMGDKVAPRREFIETHSVDLD 649


>gi|145577971|gb|ABP82704.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           mycoides]
          Length = 632

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 260/649 (40%), Positives = 379/649 (58%), Gaps = 21/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V D+GRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSIVVTDDGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R   I  QK+ RGIP + L+   +  ++ GT   F+PD +IF +  
Sbjct: 120 VVNALSTELEVFVHRDRKIHYQKYERGIPAADLKVIGET-DRTGTITRFKPDSEIFTETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            ++        +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 EYEFDTSATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E    +  K G     VE ++ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K++E   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFAIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF++ QG K  YA++ +  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKVQQGKKIQYAYNNKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632


>gi|255692967|ref|ZP_05416642.1| DNA gyrase, B subunit [Bacteroides finegoldii DSM 17565]
 gi|260621278|gb|EEX44149.1| DNA gyrase, B subunit [Bacteroides finegoldii DSM 17565]
          Length = 652

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 259/653 (39%), Positives = 381/653 (58%), Gaps = 21/653 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y A SI++LEGLE VR RP MYIG    K LHHL  E++DN++DE +AGY   IEV+++
Sbjct: 12  SYSADSIQVLEGLEAVRKRPAMYIGDISVKGLHHLVYEIVDNSIDEALAGYCTHIEVTIN 71

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV DNGRGIPV+ H K   KS LE+ +T LHAGGKFD  +Y++SGGLHGVG+S V
Sbjct: 72  EDNSITVQDNGRGIPVDYHEK-EKKSALEVAMTVLHAGGKFDKGSYKVSGGLHGVGMSCV 130

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  +   V R   I+ Q++  G PL  +++     +  GTR  F PD  IF +   +
Sbjct: 131 NALSTHMTTQVFRGGKIYQQEYEIGKPLYSVKEVG-TSDITGTRQQFWPDGSIFTETV-Y 188

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L    +  AYL+  ++   +  + +  + G  + E+FY   GL+ +++    +R  
Sbjct: 189 DYKILASRLRELAYLNAGLRISLTD-RRVVNEDGSFKSEQFYSEEGLREFVRFIESSREH 247

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           + +++    +EK+G     +E AI +     E   SY N I T EGGTH +G R ALTR 
Sbjct: 248 LINDVIYLNSEKQGIP---IEVAIMYNTGFSENVHSYVNNINTIEGGTHLAGFRRALTRT 304

Query: 342 IKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +KKYAE ++   K  + I  DD       ++SV + EP+F GQTKTKL + +    V+ A
Sbjct: 305 LKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVMGAVDQA 364

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458
           + +   +YL ++P EA  +++ VI  +  R   RK RE+ ++ + +    LPGKLADCS 
Sbjct: 365 VGEVLSYYLEEHPKEAKTIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGKLADCSD 424

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 ELF+VEGDSAGG+AKQ RNR  QA+LPLRGKILNV  A   K   +++I ++  
Sbjct: 425 KDPSKCELFLVEGDSAGGTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESEEIRNIYT 484

Query: 519 ALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
           ALG    ++        E LRY K+IIMTDADVDG+HI +L++TFF++ M  +I+  +L+
Sbjct: 485 ALGVTIGTEDDSKEANIEKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQIIQNGYLY 544

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           + +PPL+  T+G    Y   +   Q  ++ +    +  + I R+KGLGEM A QL  T M
Sbjct: 545 IATPPLYLCTKGKVKEYCWTDAQLQNFIDTYGGGSESAVHIQRYKGLGEMNAEQLWSTTM 604

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           D   R L +V I+    +  +     + LMG     R +FI+E A++  ++  
Sbjct: 605 DPENRMLKQVNID----NAAEADYIFSMLMGEDVGPRREFIEENATYA-NIDA 652


>gi|16802054|ref|NP_463539.1| DNA gyrase subunit B [Listeria monocytogenes EGD-e]
 gi|46906230|ref|YP_012619.1| DNA gyrase, B subunit [Listeria monocytogenes str. 4b F2365]
 gi|47093016|ref|ZP_00230795.1| DNA gyrase, B subunit [Listeria monocytogenes str. 4b H7858]
 gi|47097288|ref|ZP_00234846.1| DNA gyrase, B subunit [Listeria monocytogenes str. 1/2a F6854]
 gi|224498301|ref|ZP_03666650.1| DNA gyrase, B subunit [Listeria monocytogenes Finland 1988]
 gi|224503071|ref|ZP_03671378.1| DNA gyrase, B subunit [Listeria monocytogenes FSL R2-561]
 gi|226222645|ref|YP_002756752.1| DNA gyrase subunit B [Listeria monocytogenes Clip81459]
 gi|254824774|ref|ZP_05229775.1| DNA gyrase subunit B [Listeria monocytogenes FSL J1-194]
 gi|254827430|ref|ZP_05232117.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|254830702|ref|ZP_05235357.1| DNA gyrase subunit B [Listeria monocytogenes 10403S]
 gi|254851836|ref|ZP_05241184.1| DNA gyrase subunit B [Listeria monocytogenes FSL R2-503]
 gi|254899680|ref|ZP_05259604.1| DNA gyrase subunit B [Listeria monocytogenes J0161]
 gi|254913117|ref|ZP_05263129.1| DNA gyrase subunit B [Listeria monocytogenes J2818]
 gi|254930863|ref|ZP_05264222.1| DNA gyrase subunit B [Listeria monocytogenes HPB2262]
 gi|254937498|ref|ZP_05269195.1| DNA gyrase subunit B [Listeria monocytogenes F6900]
 gi|254994017|ref|ZP_05276207.1| DNA gyrase subunit B [Listeria monocytogenes FSL J2-064]
 gi|255520064|ref|ZP_05387301.1| DNA gyrase subunit B [Listeria monocytogenes FSL J1-175]
 gi|284803260|ref|YP_003415125.1| DNA gyrase subunit B [Listeria monocytogenes 08-5578]
 gi|284996401|ref|YP_003418169.1| DNA gyrase subunit B [Listeria monocytogenes 08-5923]
 gi|300763380|ref|ZP_07073378.1| DNA gyrase, B subunit [Listeria monocytogenes FSL N1-017]
 gi|21328234|gb|AAM48481.1|AF084042_1 DNA gyrase subunit B [Listeria monocytogenes]
 gi|16409365|emb|CAC98221.1| DNA gyrase subunit B [Listeria monocytogenes EGD-e]
 gi|46879494|gb|AAT02796.1| DNA gyrase, B subunit [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47014333|gb|EAL05308.1| DNA gyrase, B subunit [Listeria monocytogenes str. 1/2a F6854]
 gi|47018584|gb|EAL09338.1| DNA gyrase, B subunit [Listeria monocytogenes str. 4b H7858]
 gi|225875107|emb|CAS03795.1| DNA gyrase subunit B [Listeria monocytogenes serotype 4b str. CLIP
           80459]
 gi|258599808|gb|EEW13133.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|258605128|gb|EEW17736.1| DNA gyrase subunit B [Listeria monocytogenes FSL R2-503]
 gi|258610100|gb|EEW22708.1| DNA gyrase subunit B [Listeria monocytogenes F6900]
 gi|284058822|gb|ADB69763.1| DNA gyrase subunit B [Listeria monocytogenes 08-5578]
 gi|284061868|gb|ADB72807.1| DNA gyrase subunit B [Listeria monocytogenes 08-5923]
 gi|293582408|gb|EFF94440.1| DNA gyrase subunit B [Listeria monocytogenes HPB2262]
 gi|293591119|gb|EFF99453.1| DNA gyrase subunit B [Listeria monocytogenes J2818]
 gi|293594013|gb|EFG01774.1| DNA gyrase subunit B [Listeria monocytogenes FSL J1-194]
 gi|300515657|gb|EFK42706.1| DNA gyrase, B subunit [Listeria monocytogenes FSL N1-017]
 gi|328468327|gb|EGF39333.1| DNA gyrase subunit B [Listeria monocytogenes 1816]
          Length = 646

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 243/655 (37%), Positives = 375/655 (57%), Gaps = 20/655 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              Q  + +Y+   I++LEGLE VR RPGMYIG T ++ LHHL  E++DNA+DE +AG+ 
Sbjct: 7   TNVQENASDYNEDQIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVWEIVDNAIDEALAGFC 66

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             IE++++ +  +TV DNGRGIP   + K   + T+E+I T LHAGGKF    Y++SGGL
Sbjct: 67  TEIEITIEADNSITVRDNGRGIPTGINEKI-GRPTVEVIFTVLHAGGKFGGGGYKVSGGL 125

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS  L V V R+   + Q+F RG  +  +E++ +  + RGT + F PDP+
Sbjct: 126 HGVGASVVNALSTSLEVYVHREGQKYYQRFERGDVVMDMEEQGET-DYRGTIVHFTPDPQ 184

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   FD   L   T+  A+L+  +       +E  +      +++F++ GG+++Y++
Sbjct: 185 IFTETTEFDFDTLRTRTRELAFLNRGLTISIEDKREEHK-----VRKDFHYEGGIRSYVE 239

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333
              + + +I       + E+       VE ++ +          + N I T EGGTHESG
Sbjct: 240 HLNKAKDVIHEPPIYLEGERDDIM---VEISMQYNTGFSSNIISFANNIHTYEGGTHESG 296

Query: 334 LRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            + ALTR I  YA   +  +    ++  +D+      I+S+   +P+F GQTKTKL + +
Sbjct: 297 FKTALTRVINDYARRNKLFKDSDDNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSE 356

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLP 450
           A+   +    +  + ++++NP  A K++E  V+        +R +    + + +    LP
Sbjct: 357 ARSITDKLFSEALNKFMMENPDVAKKIVEKGVVASRARLAAKRAREVARKSSGLEISSLP 416

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I  N
Sbjct: 417 GKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILAN 476

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ M  L++  
Sbjct: 477 EEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAG 536

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPL++I  G +  Y + +   +  L      G  K  I R+KGLGEM   QL +
Sbjct: 537 YIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYKGLGEMNPEQLWD 594

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T M+   RTLL+V I   +    D  ++   LMG + + R KFI++ A ++ ++ 
Sbjct: 595 TTMNPEHRTLLQVNIKDAI----DADETFEMLMGDRVEPRRKFIEDNAQYVKNLD 645


>gi|86132658|ref|ZP_01051251.1| DNA gyrase subunit B [Dokdonia donghaensis MED134]
 gi|85816900|gb|EAQ38085.1| DNA gyrase subunit B [Dokdonia donghaensis MED134]
          Length = 647

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 252/661 (38%), Positives = 382/661 (57%), Gaps = 23/661 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            ++ +    Y A SI+ LEG+E VRMRP MYIG    + LHHL  EV+DN++DE + GY 
Sbjct: 1   MSDDANKKQYSADSIQALEGMEHVRMRPSMYIGDVGVRGLHHLVYEVVDNSIDEAMGGYC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I+V+++ +  +TV DNGRGIPV  H K    S L++++T + AGGKFD  +Y++SGGL
Sbjct: 61  DAIDVTINEDNSITVRDNGRGIPVGIHKK-EGVSALQVVMTKIGAGGKFDKDSYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+S VNALS+ L  TV ++  ++ Q++ RG  L P++      +  GT +TF PD  
Sbjct: 120 HGVGVSCVNALSNHLKATVYKEGKVWEQEYERGKALYPVKAIGDT-DFTGTEVTFTPDDS 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     ++   L    +  AYL+  +    +  +   E     E E F+   GL  +++
Sbjct: 179 IFQQTTEYNYDTLASRLRELAYLNKGITVTLTDKRNKKEDG-EFENETFHSNEGLSEFVR 237

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               NR+ I   + + + EK G     VE A+ + +     + SY N I T EGGTH +G
Sbjct: 238 FLDGNRNPIIGNVISMEGEKNGVP---VEVAMIYNDSYAENLHSYVNNINTHEGGTHLAG 294

Query: 334 LRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R  LT  +KK+A+ +    K    I  DD       I+SV + EP+F GQTKTKL + +
Sbjct: 295 FRRGLTGSLKKFADASGMLDKLKFDIAGDDFREGLTAIISVKVSEPQFEGQTKTKLGNRE 354

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLP 450
               V  A+ +  + Y+ +NP +A  +++ VI  ++ R   +K RE+  RKT +    LP
Sbjct: 355 VTSAVSQAVAEMIEIYMEENPNDAKTIVQKVILAAQARHAAKKAREMVQRKTVMSIGGLP 414

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL+DCS+      E+F+VEGDSAGG+AKQ R+R  QA+LPLRGKILNV  A   K+  N
Sbjct: 415 GKLSDCSETDPAVCEVFLVEGDSAGGTAKQGRDREFQAILPLRGKILNVEKAMQHKVFEN 474

Query: 511 QQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           ++I ++  ALG    ++   +      LRY KV+IM DADVDG+HI++L+LTFF++ M +
Sbjct: 475 EEIKNIFTALGVTIGTEEDSKALNLSKLRYHKVVIMCDADVDGSHISTLILTFFFRYMRE 534

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           L+E+  +++ +PPL+ + +G K  YA D++ +  I E     G   + I R+KGLGEM A
Sbjct: 535 LVEKGFVYIATPPLYLVKKGQKKQYAWDDKERDAIAERL---GTQGVSIQRYKGLGEMNA 591

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL +T M+   RTL +V I+       +     + LMG +   R +FI++ A +  ++ 
Sbjct: 592 EQLWDTTMNPEFRTLRQVAIDNGT----EADRIFSMLMGDEVPPRREFIEKNAIYA-NID 646

Query: 686 T 686
            
Sbjct: 647 A 647


>gi|16799085|ref|NP_469353.1| DNA gyrase subunit B [Listeria innocua Clip11262]
 gi|16412427|emb|CAC95239.1| DNA gyrase subunit B [Listeria innocua Clip11262]
          Length = 646

 Score =  627 bits (1617), Expect = e-177,   Method: Composition-based stats.
 Identities = 242/651 (37%), Positives = 374/651 (57%), Gaps = 20/651 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
            ++ +Y+   I++LEGLE VR RPGMYIG T ++ LHHL  E++DNA+DE +AG+   IE
Sbjct: 11  ESASDYNEDQIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVWEIVDNAIDEALAGFCTEIE 70

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           ++++ +  +TV DNGRGIP   + K   + T+E+I T LHAGGKF    Y++SGGLHGVG
Sbjct: 71  ITIEADNSITVRDNGRGIPTGINEKI-GRPTVEVIFTVLHAGGKFGGGGYKVSGGLHGVG 129

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS  L V V R+   + Q+F RG  +  +E + +  + RGT + F PDP+IF +
Sbjct: 130 ASVVNALSTSLEVYVHREGQKYYQRFERGDVVMDMEVQGET-DYRGTIVHFTPDPQIFTE 188

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              FD   L   T+  A+L+  +       +E  +      +++F++ GG+++Y++   +
Sbjct: 189 TTEFDFDTLRTRTRELAFLNRGLTISIEDKREEHK-----VRKDFHYEGGIRSYVEHLNK 243

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVA 337
            + +I       + E+       VE ++ +          + N I T EGGTHESG + A
Sbjct: 244 AKDVIHEPPIYLEGERDDIM---VEISMQYNTGFSSNIISFANNIHTYEGGTHESGFKTA 300

Query: 338 LTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR I  YA   +  +    ++  +D+      I+S+   +P+F GQTKTKL + +A+  
Sbjct: 301 LTRVINDYARRNKLFKDSDDNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARSI 360

Query: 396 VENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454
            +    +  + ++++NP  A K++E  V+        +R +    + + +    LPGKLA
Sbjct: 361 TDKLFSEALNKFMMENPDVAKKIVEKGVVASRARLAAKRAREVARKSSGLEISSLPGKLA 420

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I  N++I 
Sbjct: 421 DCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEEIR 480

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            +  A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ M  L++  ++++
Sbjct: 481 TIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGYIYI 540

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL++I  G +  Y + +   +  L      G  K  I R+KGLGEM   QL +T M+
Sbjct: 541 AQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYKGLGEMNPEQLWDTTMN 598

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              RTLL+V I   +    D  ++   LMG + + R KFI++ A ++ ++ 
Sbjct: 599 PEHRTLLQVNIKDAI----DADETFEMLMGDRVEPRRKFIEDNAQYVKNLD 645


>gi|296127762|ref|YP_003635014.1| DNA gyrase, B subunit [Brachyspira murdochii DSM 12563]
 gi|296019578|gb|ADG72815.1| DNA gyrase, B subunit [Brachyspira murdochii DSM 12563]
          Length = 637

 Score =  627 bits (1617), Expect = e-177,   Method: Composition-based stats.
 Identities = 253/652 (38%), Positives = 374/652 (57%), Gaps = 23/652 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +A   Y + +I++LEGL+PVR RPGMYIG T  + LHHL  EV+DN++DE +AGY   I 
Sbjct: 3   AAEKTYSSKNIQVLEGLDPVRKRPGMYIGSTGAQGLHHLVYEVVDNSIDEAMAGYCKNIT 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+++ +  + V D+GRGIPV+ HPK    S LE+++T LHAGGKFDN TY++SGGLHGVG
Sbjct: 63  VTIEKDNIIKVEDDGRGIPVDMHPKL-KISALEVVMTKLHAGGKFDNETYKVSGGLHGVG 121

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS EL   V +   ++ Q + RG+P  P+++        GT + F+ D  IF  
Sbjct: 122 VSVVNALSTELIAEVRKDGKLYRQVYHRGVPEEPVKEVGTSTK-NGTTVIFKADADIFET 180

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              +D   L    +  A+L+  ++   +  +E            FY+ GG++ ++    E
Sbjct: 181 TV-YDYKILANRLRELAFLNRGIRITLTDKREAETVSNE-----FYYEGGIEMFITHLNE 234

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N+  +  +       +  T    VE A+ + +     I +YCN I T EGGTH  G R A
Sbjct: 235 NKKALHDKPIYLHKTEDKT---DVEVAMQYVDAYNENIFTYCNNINTTEGGTHLVGFRTA 291

Query: 338 LTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR    +A+      K  I+ + +D     V ++SV I  P+F GQTKTKL + + +  
Sbjct: 292 LTRVYTDFAKKLELDKKNKITFMGEDTREGLVAVVSVKIPNPQFEGQTKTKLGNTEVRAV 351

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454
            E  + +  + Y  QNP     +LE +I  +  R   RK R+   RK A+    LPGKLA
Sbjct: 352 TEKLVVEGLNDYFSQNPKVIKAILEKIISAANAREAARKARDLARRKNALESDSLPGKLA 411

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS+      E+++VEGDSAGG+AK  R+R  QA+LPLRGK+LNV  A  +KI +N+ + 
Sbjct: 412 DCSEQEVDKCEVYLVEGDSAGGTAKGGRDRHFQAILPLRGKVLNVEKARLDKIIDNESLK 471

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++ ALGC   + +    +RY +VIIM DAD+DG+HI +LLLTFF++ M  LI+  H+F+
Sbjct: 472 PIIAALGCGVGASFDISKIRYGRVIIMADADIDGSHIRTLLLTFFFRYMRPLIDLGHIFI 531

Query: 575 ISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
             PPL++I+   K+  YA+ +E + KIL E   +   K +I R+KGLGEM A QL ET M
Sbjct: 532 AVPPLYKISFDKKNFTYAYSDEQRDKILSE---NKDRKYDIQRYKGLGEMNADQLWETTM 588

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +   R + +V         +      + LMG +   R  FI+  A ++ ++ 
Sbjct: 589 NPETRLMYQV----LTEDAEKADQLFSMLMGDEVKPRRDFIEANARYVKNLD 636


>gi|255010097|ref|ZP_05282223.1| DNA gyrase subunit B [Bacteroides fragilis 3_1_12]
 gi|313147892|ref|ZP_07810085.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313136659|gb|EFR54019.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 652

 Score =  627 bits (1617), Expect = e-177,   Method: Composition-based stats.
 Identities = 260/660 (39%), Positives = 386/660 (58%), Gaps = 21/660 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
            N + + +Y A SI++LEGLE VR RP MYIG    K LHHL  E++DN++DE +AGY +
Sbjct: 5   QNPTNNGSYSADSIQVLEGLEAVRKRPAMYIGDISVKGLHHLVYEIVDNSIDEALAGYCD 64

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            IEV+++ +  +TV DNGRGIPV+ H K   KS LE+ +T LHAGGKFD  +Y++SGGLH
Sbjct: 65  HIEVTINEDNSITVQDNGRGIPVDFHEK-EQKSALEVAMTVLHAGGKFDKGSYKVSGGLH 123

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+S VNALS  +   V R   I+ Q++  G PL  +++     +  GT+  F PD  I
Sbjct: 124 GVGMSCVNALSTHMTTQVFRNGKIYQQEYEIGKPLYAVKEVG-TADHTGTKQQFWPDDSI 182

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   +D   L    +  AYL+  ++   +  + +  + G  + E FY   GL+ +++ 
Sbjct: 183 FTETV-YDYKILASRLRELAYLNAGLRISLTD-RRVINEDGSFKHETFYSEEGLREFVRF 240

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              +R  + +++    TEK+      +E AI +       I SY N I T EGGTH +G 
Sbjct: 241 IESSREHLINDVIYLNTEKQNIP---IEVAIMYNTGFSENIHSYVNNINTIEGGTHLAGF 297

Query: 335 RVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +KKYAE ++   K  I I  DD       ++SV + EP+F GQTKTKL + + 
Sbjct: 298 RRALTRTLKKYAEDSKMLEKVKIEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEV 357

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
              V+ A+ +  ++YL ++P EA  +++ VI  +  R   RK RE+ ++ + +    LPG
Sbjct: 358 MGAVDQAVGEVLNYYLEEHPKEAKAIVDKVILAATARHAARKAREMVQRKSPMSGGGLPG 417

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS       ELF+VEGDSAGG+AKQ RNR+ QA+LPLRGKILNV  A   K   ++
Sbjct: 418 KLADCSDKDPQKCELFLVEGDSAGGTAKQGRNRAFQAILPLRGKILNVEKAMYHKALESE 477

Query: 512 QIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           +I ++  ALG    ++        + LRY K+IIMTDADVDG+HI +L++TFF++ M  +
Sbjct: 478 EIRNIYTALGVTIGTEEDSKAANIDKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQI 537

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           I+  +L++ +PPL+   +G    Y   +  +QK ++ +    +  I   R+KGLGEM A 
Sbjct: 538 IQNGYLYIATPPLYLCKKGKVEEYCWTDAQRQKFIDTYGGGSENAIHTQRYKGLGEMNAQ 597

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           QL ET MD   R L +V I+    +  +     + LMG     R +FI+E A++  ++  
Sbjct: 598 QLWETTMDPENRMLKQVNID----NAAEADYIFSMLMGEDVGPRREFIEENATYA-NIDA 652


>gi|303234457|ref|ZP_07321095.1| DNA gyrase, B subunit [Finegoldia magna BVS033A4]
 gi|302494412|gb|EFL54180.1| DNA gyrase, B subunit [Finegoldia magna BVS033A4]
          Length = 638

 Score =  627 bits (1617), Expect = e-177,   Method: Composition-based stats.
 Identities = 255/653 (39%), Positives = 385/653 (58%), Gaps = 21/653 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
             +  Y A  I +LEGLEPVR+RPGMYIG TDEK LHHL  EV+DN++DE +AG  +LI+
Sbjct: 2   KKNREYTADQITVLEGLEPVRVRPGMYIGSTDEKGLHHLVYEVVDNSIDEALAGVCDLIK 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +  + V D+G GIPVE HPK   KSTLE +LT LHAGGKF N  Y+ SGGLHGVG
Sbjct: 62  VTIKKDNSIIVEDDGSGIPVETHPK-TGKSTLETVLTVLHAGGKFSNDAYQYSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +S VNALS  L   V R   ++ Q+F +G  ++ L   ++     GT I F PD  IF  
Sbjct: 121 VSCVNALSTYLIARVKRDGKMYEQRFEKGKTVTGLTVVKENVRGTGTTIEFMPDDTIFET 180

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              FD   L K  +  A+L+  VK  ++ +++         KE F++ GG+K++++   +
Sbjct: 181 LN-FDRNVLAKRFREMAFLNKGVKIEFADERD-------GYKELFHYEGGIKSFVEYINK 232

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           ++  +  E+   + EK  T    VE A+ + E     I S+ N I T +GGTH  G + A
Sbjct: 233 SKKPLDHEVMYIEGEKDTT---KVEIAMQYTESYNETIVSFTNNIKTVDGGTHVVGFKSA 289

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  YA       ++  ++  DD+      ++SV +  P+F GQTK KL + +A+  
Sbjct: 290 LTRALNDYARNKNILKEKDDNLSGDDVREGITAVVSVKLNNPQFEGQTKGKLGNSEARTV 349

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454
           V++ + +    Y  +NP     +++  +   + RL  R+ R+ V +K+ +    LPGKLA
Sbjct: 350 VDSVVYEHLSFYFEENPKIVRTIIQKALASQKARLAARRARDLVRKKSVLDNTTLPGKLA 409

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC  +     E+F+VEGDSAGGSAK  R+   QA+LPLRGKILNV  A  E++ N+++I 
Sbjct: 410 DCQSSDIEYNEIFLVEGDSAGGSAKGGRDNKFQAILPLRGKILNVEKAHLERVLNSEEIK 469

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++ A G      +    LRY K++IMTDADVDGAHI +LLLTF Y+ M  L+E+ H+++
Sbjct: 470 AMITAFGTGIGKNFDISKLRYGKIVIMTDADVDGAHIRTLLLTFLYRFMKPLVEKGHVYI 529

Query: 575 ISPPLFRITQGTKS-VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
             PPL+ I +G K   Y + E+  ++ LE++ +  +  I++ R+KGLGEM A QL +T M
Sbjct: 530 AQPPLYGIIKGVKVMEYCYTEQELEEALEKYGE--RSNIKVQRYKGLGEMNAEQLWDTTM 587

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           +   R L++VEI+       +  ++ + LMG   + R +FI++ A +  ++  
Sbjct: 588 NPEHRVLIKVEIDG--EDENELDNTFDVLMGDNVEPRREFIEQNAVYAQNIDA 638


>gi|217965929|ref|YP_002351607.1| DNA gyrase, B subunit [Listeria monocytogenes HCC23]
 gi|217335199|gb|ACK40993.1| DNA gyrase, B subunit [Listeria monocytogenes HCC23]
 gi|307569529|emb|CAR82708.1| DNA gyrase, B subunit [Listeria monocytogenes L99]
          Length = 646

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 243/655 (37%), Positives = 374/655 (57%), Gaps = 20/655 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              Q  + +Y+   I++LEGLE VR RPGMYIG T ++ LHHL  E++DNA+DE +AG+ 
Sbjct: 7   TNVQENASDYNEDQIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVWEIVDNAIDEALAGFC 66

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             IE++++ +  +TV DNGRGIP   + K   + T+E+I T LHAGGKF    Y++SGGL
Sbjct: 67  TEIEITIEADNSITVRDNGRGIPTGINEKI-GRPTVEVIFTVLHAGGKFGGGGYKVSGGL 125

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS  L V V R+   + Q+F RG  +  +E++ +  + RGT + F PDP+
Sbjct: 126 HGVGASVVNALSTSLEVYVHREGQKYYQRFERGDVVMDMEEQGET-DYRGTIVHFTPDPQ 184

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   FD   L   T+  A+L+  +       +E  +      +++F++ GG+++Y++
Sbjct: 185 IFTETTEFDFDTLRTRTRELAFLNRGLTISIEDKREEHK-----VRKDFHYEGGIRSYVE 239

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333
              + + +I       + E+       VE ++ +          + N I T EGGTHESG
Sbjct: 240 HLNKAKDVIHEPPIYLEGERDDIM---VEISMQYNTGFSSNIISFANNIHTYEGGTHESG 296

Query: 334 LRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            + ALTR I  YA   +  +    ++  +D+      I+S+   +P+F GQTKTKL + +
Sbjct: 297 FKTALTRVINDYARRNKLFKDSDDNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSE 356

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLP 450
           A+   +    +  + ++++NP  A K++E  V+        +R +    + + +    LP
Sbjct: 357 ARSITDKLFSEALNKFMMENPDVAKKIVEKGVVASRARLAAKRAREVARKSSGLEISSLP 416

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I  N
Sbjct: 417 GKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILAN 476

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ M  L++  
Sbjct: 477 EEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAG 536

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPL++I  G +  Y + +   +  L      G  K  I R+KGLGEM   QL  
Sbjct: 537 YIYIAQPPLYQIKHGKQVEYVYSDGQLEDYLASL--DGDTKYSIQRYKGLGEMNPEQLWN 594

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T M+   RTLL+V I   +    D  ++   LMG + + R KFI++ A ++ ++ 
Sbjct: 595 TTMNPEHRTLLQVNIKDAI----DADETFEMLMGDRVEPRRKFIEDNAQYVKNLD 645


>gi|325287192|ref|YP_004262982.1| DNA gyrase subunit B [Cellulophaga lytica DSM 7489]
 gi|324322646|gb|ADY30111.1| DNA gyrase, B subunit [Cellulophaga lytica DSM 7489]
          Length = 646

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 264/661 (39%), Positives = 384/661 (58%), Gaps = 24/661 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + ++  +NY A SI+ LEG+E VRMRP MYIG    + LHHL  EV+DN++DE + G+ 
Sbjct: 1   MSEEANKNNYSADSIQALEGMEHVRMRPSMYIGDVGVRGLHHLVYEVVDNSIDEAMGGHC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I V ++ +G +T  DNGRGIPV  H K    S L++++T + AGGKFD  +Y++SGGL
Sbjct: 61  DNISVVINEDGSITTKDNGRGIPVGLHKK-EGVSALQVVMTKIGAGGKFDKDSYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+S VNALS+ L  TV R+  I+ Q++ RG  L P++   +     GT +TF PD  
Sbjct: 120 HGVGVSCVNALSNSLKATVYREGKIWEQEYERGKALYPVKSIGETEE-TGTIVTFYPDDT 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     ++   L    +  AYL+  V    +  +   EK      E FY   GLK +++
Sbjct: 179 IFTQTTEYNYETLSNRMRELAYLNKGVTISITDKRVKDEKG-EFLSEVFYSEEGLKEFIK 237

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333
               NR  +  E+ + + EK G     VE A+ +     E    Y N I T EGGTH SG
Sbjct: 238 FLDGNREQLIREVVSMEGEKNGIP---VEVAMVYNTSYSENLHSYVNNINTHEGGTHLSG 294

Query: 334 LRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F GQTKTKL + +
Sbjct: 295 FRRGLTSTLKKYADASGMLDKLKFEIQGDDFREGLTAIVSVKVAEPQFEGQTKTKLGNRE 354

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLP 450
               V  A+ +   +YL +NP +A  +++ VI  ++ R    K RE+  RKT +    LP
Sbjct: 355 VSSAVSQAVSEMLTNYLEENPDDAKVIVQKVILAAQARHAATKAREMVQRKTVMSIGGLP 414

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL+DCS+  A   E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV  A   K+  N
Sbjct: 415 GKLSDCSEQDATKCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFEN 474

Query: 511 QQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           ++I ++  ALG    ++        + LRY KV+IM DADVDG+HI +L+LTFF++ M +
Sbjct: 475 EEIKNIYTALGVTIGTEEDSKALNLDKLRYHKVVIMCDADVDGSHIETLILTFFFRFMRE 534

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           LIE  H+++ +PPL+ + +GTK  YA +++ + +I + F     G + I R+KGLGEM A
Sbjct: 535 LIEGGHVYIATPPLYLVKKGTKKRYAWNDKERDEIADSF----NGSVGIQRYKGLGEMNA 590

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL +T M+ + RTL +V I     S        + LMG +   R +FI++ A +  ++ 
Sbjct: 591 EQLWDTTMNPDFRTLRQVTIENATES----DRIFSMLMGDEVPPRREFIEKNAVYA-NID 645

Query: 686 T 686
            
Sbjct: 646 A 646


>gi|29348838|ref|NP_812341.1| DNA gyrase subunit B [Bacteroides thetaiotaomicron VPI-5482]
 gi|253568817|ref|ZP_04846227.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298387912|ref|ZP_06997461.1| DNA gyrase, B subunit [Bacteroides sp. 1_1_14]
 gi|29340744|gb|AAO78535.1| DNA gyrase subunit B [Bacteroides thetaiotaomicron VPI-5482]
 gi|251840836|gb|EES68917.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298259319|gb|EFI02194.1| DNA gyrase, B subunit [Bacteroides sp. 1_1_14]
          Length = 653

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 262/653 (40%), Positives = 385/653 (58%), Gaps = 20/653 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y A SI++LEGLE VR RP MYIG    K LHHL  E++DN++DE +AGY + IEV+++
Sbjct: 12  SYSADSIQVLEGLEAVRKRPAMYIGDISIKGLHHLVYEIVDNSIDEALAGYCDHIEVTIN 71

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV DNGRGIPV+ H K   KS LE+ +T LHAGGKFD  +Y++SGGLHGVG+S V
Sbjct: 72  EDNSITVQDNGRGIPVDYHEK-EKKSALEVAMTVLHAGGKFDKGSYKVSGGLHGVGMSCV 130

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  +   V R   I+ Q++  G PL  +++   V +  GTR  F PD  IF +   +
Sbjct: 131 NALSTHMTTQVFRNGKIYQQEYEIGKPLYSVKEVG-VSDITGTRQQFWPDDTIFTETV-Y 188

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L    +  AYL+  ++   +  + + E+ G  + E FY   GL+ +++    +R  
Sbjct: 189 DYKILASRLRELAYLNAGLRISLTDRRVVNEEDGSFKSEVFYSEEGLREFVRFIESSREH 248

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           + +++    +EK+G     +E AI +     E   SY N I T EGGTH +G R ALTR 
Sbjct: 249 LINDVIYLNSEKQGIP---IEIAIMYNTGFSENVHSYVNNINTIEGGTHLAGFRRALTRT 305

Query: 342 IKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +KKYAE ++   K  + I  DD       ++SV + EP+F GQTKTKL + +    V+ A
Sbjct: 306 LKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVMGAVDQA 365

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458
           + +   +YL ++P EA  +++ VI  +  R   RK RE+ ++ + +    LPGKLADCS 
Sbjct: 366 VGEVLAYYLEEHPKEAKTIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGKLADCSD 425

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 ELF+VEGDSAGG+AKQ RNR  QA+LPLRGKILNV  A   K   + +I ++  
Sbjct: 426 KDPSKCELFLVEGDSAGGTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESDEIRNIYT 485

Query: 519 ALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
           ALG    ++        E LRY K+IIMTDADVDG+HI +L++TFF++ M  +I+  +L+
Sbjct: 486 ALGVTIGTEDDSKEANIEKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQIIQNGYLY 545

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           + +PPL+   +G    Y   +  +QK ++ +    +  +   R+KGLGEM A QL ET M
Sbjct: 546 IATPPLYLCKKGKVEEYCWTDAQRQKFIDTYGGGLENAVHTQRYKGLGEMNAQQLWETTM 605

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           D + R L +V I+    +  +     + LMG     R +FI+E A++  ++ T
Sbjct: 606 DPDNRMLKQVNID----NAAEADYIFSMLMGEDVGPRREFIEENATYA-NIDT 653


>gi|254302374|ref|ZP_04969732.1| DNA topoisomerase (ATP-hydrolyzing) [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148322566|gb|EDK87816.1| DNA topoisomerase (ATP-hydrolyzing) [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 635

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 256/648 (39%), Positives = 378/648 (58%), Gaps = 20/648 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y+A +I +LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AGY + IEV + 
Sbjct: 2   SYEAQNITVLEGLEAVRKRPGMYIGTTSERGLHHLVWEIVDNSVDEALAGYCDKIEVKIL 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  + VVDNGRGIP + HPK+  KS LEI+LT LHAGGKF+N  Y++SGGLHGVG+SVV
Sbjct: 62  PDNIIEVVDNGRGIPTDIHPKY-GKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGVSVV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L V V +   I  QK+ RG P   ++       N+ GT + F+ D +IF     
Sbjct: 121 NALSEWLEVEVRKAGVIHYQKYHRGKPEEDVKIIGSCDENEHGTIVRFKADGEIFETLI- 179

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L    +  AYL+  +    S  ++  +K      E + F GG+  +L   ++  +
Sbjct: 180 YNYFTLSNRLKELAYLNKGLTITLSDLRKDEKKE-----ETYKFDGGILDFLNEIVKEDT 234

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTR 340
            I  + F   +E+       V+    +   +N  I S+ N I T EGGTH  G R ALT+
Sbjct: 235 TIIEKPFYISSEQDNV---GVDVTFTYTTSQNEVIYSFVNNINTHEGGTHVQGFRTALTK 291

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I    +       +   ++ +D+    VGI+S  I +P+F GQTK KL + +    V  
Sbjct: 292 VINDVGKAQGLLKDKDGKLMGNDIREGVVGIVSTKIPQPQFEGQTKGKLGNSEVSGIVNT 351

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCS 457
            + +    +L  NP     ++E ++   + R   +K RE+  + + +    LPGKLADC+
Sbjct: 352 IVSNSLKIFLEDNPNITKIIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCT 411

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
              A   E+FIVEGDSAGGSAKQ R+R NQA+LPLRGKI+NV  AG  K   + +I  +V
Sbjct: 412 SKKAEECEIFIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMV 471

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A G      +    LRY K+I+MTDADVDGAHI +L+LTF Y+ M DLI   ++++  P
Sbjct: 472 TAFGTSIGETFDISKLRYGKIILMTDADVDGAHIRTLILTFLYRYMIDLIYAGNVYIACP 531

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL++++ G + VYA+++   + +L +  +  K K  I R+KGLGEM   QL ET M+ + 
Sbjct: 532 PLYKVSSGKQIVYAYNDLELKNVLGQMNQDNK-KYTIQRYKGLGEMNPEQLWETTMNPDG 590

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           R LL+V I+    + ++     +KLMG K + R +FI+E A ++ ++ 
Sbjct: 591 RLLLKVSID----NAREADMLFDKLMGDKVEPRREFIEEHAEYVKNID 634


>gi|88809918|ref|ZP_01125423.1| DNA topoisomerase IV subunit B [Synechococcus sp. WH 7805]
 gi|88786108|gb|EAR17270.1| DNA topoisomerase IV subunit B [Synechococcus sp. WH 7805]
          Length = 655

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 271/658 (41%), Positives = 380/658 (57%), Gaps = 20/658 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
                    Y A  I++LEGLEPVR RPGMYIG T  + LHHL  EV+DN++DE +AG+ 
Sbjct: 2   SEAAKVQAAYGAEQIQVLEGLEPVRKRPGMYIGTTGPRGLHHLVYEVVDNSVDEALAGHC 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             I+V L  +G   + DNGRGIP + HP+   KS LE +LT LHAGGKF    Y++SGGL
Sbjct: 62  TEIQVVLGEDGSACITDNGRGIPTDVHPR-TGKSALETVLTVLHAGGKFGAGGYKVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS---PLEKKEKVRNKRGTRITFRP 211
           HGVG+SVVNALS+ + VTV RQ  +  Q+F RG P+       +  +   + GT + F+P
Sbjct: 121 HGVGVSVVNALSEWVDVTVRRQAQVHRQRFERGAPIGSLVSEPQPAEEEGRTGTSVRFKP 180

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA-EKYGIPEKEEFYFPGGLK 270
           D +IF     FD A L    +  AYL+G V+  +  ++E A +  G P +E +++ GG+K
Sbjct: 181 DIEIFTVGIVFDYATLSARLRELAYLNGGVRIVFRDERENARDAEGNPHEEIYFYEGGIK 240

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC--EENPEITSYCNTILTDEGG 328
            Y+      +  +  EI     EK G    +VE A+ WC    +  I  + N I T +GG
Sbjct: 241 EYVAYMNAEKDALHPEIIYVNAEKDGV---SVEAALQWCVDAYSDSILGFANNIRTVDGG 297

Query: 329 THESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH  GL+  LTR +  +A+    ++    ++  +++      +LSV + EPEF GQTKTK
Sbjct: 298 THIEGLKTVLTRTLNTFAKKRGKRKESDSNLAGENIREGLTAVLSVKVPEPEFEGQTKTK 357

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           L + + +  V++ + +    YL  NP     +LE  I+        R+ RE V RK+ + 
Sbjct: 358 LGNTEVRGIVDSLVGESLSQYLEFNPGVIDMILEKAIQAFNAAEAARRARELVRRKSVLE 417

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILN+      
Sbjct: 418 SSTLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDA 477

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           KI  N +I  L+ ALG   + +  +   LRY +V+IMTDADVDGAHI +LLLTFFY+   
Sbjct: 478 KIYKNTEIQSLITALGLGIKGEDFDVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQK 537

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
           +L+E  ++++  PPL+++ +G    Y ++E   QK LE F +  K    I RFKGLGEM+
Sbjct: 538 ELVEGGYIYIACPPLYKVERGKNHTYCYNESELQKTLEGFGE--KANYNIQRFKGLGEMM 595

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
             QL ET MD   RT+ RVEI   L    +       LMG K   R +FI+  ++ +D
Sbjct: 596 PKQLWETTMDPTTRTMKRVEIEDAL----EADRIFTILMGDKVAPRREFIETHSAELD 649


>gi|169823702|ref|YP_001691313.1| DNA gyrase B subunit [Finegoldia magna ATCC 29328]
 gi|167830507|dbj|BAG07423.1| DNA gyrase B subunit [Finegoldia magna ATCC 29328]
          Length = 638

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 256/653 (39%), Positives = 385/653 (58%), Gaps = 21/653 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
             +  Y A  I +LEGLEPVR+RPGMYIG TDEK LHHL  EV+DN++DE +AG  +LI+
Sbjct: 2   KKNREYTADQITVLEGLEPVRVRPGMYIGSTDEKGLHHLVYEVVDNSIDEALAGVCDLIK 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +  + V D+G GIPVE HPK   KSTLE +LT LHAGGKF N  Y+ SGGLHGVG
Sbjct: 62  VTIKKDNSIIVEDDGSGIPVETHPK-TGKSTLETVLTVLHAGGKFSNDAYQYSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +S VNALS  L   V R   ++ Q+F +G  ++ L   ++     GT I F PD  IF  
Sbjct: 121 VSCVNALSTYLIARVKRDGKMYEQRFEKGKTVTGLTVVKENVRGTGTTIEFMPDDTIFET 180

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              FD   L K  +  A+L+  VK  +S +++         KE F++ GG+K++++   +
Sbjct: 181 LN-FDKNVLAKRFREMAFLNKGVKIEFSDERD-------GYKELFHYEGGIKSFVEYINK 232

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           ++  +  E+   + EK  T    VE A+ + E     I S+ N I T +GGTH  G + A
Sbjct: 233 SKKPLDHEVMYIEGEKDTT---KVEIAMQYTESYNETIVSFTNNIKTVDGGTHVVGFKSA 289

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  YA       ++  ++  DD+      ++SV +  P+F GQTK KL + +A+  
Sbjct: 290 LTRALNDYARNKNILKEKDDNLSGDDVREGITAVVSVKLNNPQFEGQTKGKLGNSEARTV 349

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454
           V++ + +    Y  +NP     +++  +   + RL  R+ R+ V +K+ +    LPGKLA
Sbjct: 350 VDSVVYEHLSFYFEENPKIVRTIIQKALASQKARLAARRARDLVRKKSVLDNTTLPGKLA 409

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC  +     E+F+VEGDSAGGSAK  R+   QA+LPLRGKILNV  A  E++ N+++I 
Sbjct: 410 DCQSSDIEYNEIFLVEGDSAGGSAKGGRDNKFQAILPLRGKILNVEKAHLERVLNSEEIK 469

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++ A G      +    LRY K++IMTDADVDGAHI +LLLTF Y+ M  L+E+ H+++
Sbjct: 470 AMITAFGTGIGKNFDISKLRYGKIVIMTDADVDGAHIRTLLLTFLYRFMKPLVEKGHVYI 529

Query: 575 ISPPLFRITQGTKS-VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
             PPL+ I +G K   Y + E+  ++ LE++ +  +  I++ R+KGLGEM A QL +T M
Sbjct: 530 AQPPLYGIIKGVKVMEYCYTEQELEEALEKYGE--RSNIKVQRYKGLGEMNAEQLWDTTM 587

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           +   R L++VEI+       +  ++ + LMG   + R +FI++ A +  ++  
Sbjct: 588 NPEHRILIKVEIDG--EDENELDNTFDVLMGDNVEPRREFIEQNAVYAQNIDA 638


>gi|260436552|ref|ZP_05790522.1| DNA gyrase, B subunit [Synechococcus sp. WH 8109]
 gi|260414426|gb|EEX07722.1| DNA gyrase, B subunit [Synechococcus sp. WH 8109]
          Length = 655

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 266/654 (40%), Positives = 379/654 (57%), Gaps = 16/654 (2%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
                + Y A  I++LEGLEPVR RPGMYIG T  + LHHL  EV+DN++DE +AG+ + 
Sbjct: 4   ASKVQNAYGAEQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALAGHCDR 63

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V L  +G   V DNGRGIP + HP+   KS LE +LT LHAGGKF    Y++SGGLHG
Sbjct: 64  ILVVLGEDGSAAVSDNGRGIPTDVHPR-TGKSALETVLTVLHAGGKFGAGGYKVSGGLHG 122

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV---RNKRGTRITFRPDP 213
           VG+SVVNALS+ + VTV RQ  +  Q+F RG  +  L  + +      + GT + F+PD 
Sbjct: 123 VGVSVVNALSEWVQVTVRRQGQVHRQRFERGAAIGELASESQPAAESGETGTTVCFKPDL 182

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA-EKYGIPEKEEFYFPGGLKTY 272
           +IF     FD A L    +  AYL+G V+  +  ++E A ++ G P +E +++ GG+K Y
Sbjct: 183 EIFTGGIVFDYATLSARLRELAYLNGGVRIVFRDERESARDEEGKPHEETYFYEGGIKEY 242

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHES 332
           +    + +  +  EI    +EK G  +            +  I  + N I T +GGTH  
Sbjct: 243 VAYMNKEKDALHPEIIYVNSEKDGV-QVEAALQWCSDAYSDSILGFANNIRTVDGGTHIE 301

Query: 333 GLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           GL+  LTR +  +A+    ++    ++  +++      +LSV + EPEF GQTKTKL + 
Sbjct: 302 GLKTVLTRTLNAFAKKLGKRKESDSNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLGNT 361

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           + +  V+N + +    +L  NP   + +LE  I+        R+ RE V RK+ +    L
Sbjct: 362 EVRGIVDNLVGEALSQFLEFNPSVISLILEKAIQAFNAAEAARRARELVRRKSVLESSTL 421

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILN+      KI  
Sbjct: 422 PGKLADCSSRDPGESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYK 481

Query: 510 NQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           N +I  L+ ALG   + +  +   LRY +V+IMTDADVDGAHI +LLLTFFY+   +L+E
Sbjct: 482 NTEIQALITALGLGIKGEDFDVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKELVE 541

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             ++++  PPL+++ +G    Y ++E   QK LE F +  K    I RFKGLGEM+  QL
Sbjct: 542 GGYIYIACPPLYKVERGKNHTYCYNEGDLQKTLEGFGE--KANYTIQRFKGLGEMMPKQL 599

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            ET MD   RT+ RVEI   +    +       LMG K   R +FI+  ++ +D
Sbjct: 600 WETTMDPTTRTMKRVEIEDAI----EADRIFTILMGDKVAPRREFIETHSAELD 649


>gi|259418258|ref|ZP_05742176.1| DNA topoisomerase IV, B subunit [Silicibacter sp. TrichCH4B]
 gi|259345653|gb|EEW57497.1| DNA topoisomerase IV, B subunit [Silicibacter sp. TrichCH4B]
          Length = 652

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 347/652 (53%), Positives = 447/652 (68%), Gaps = 10/652 (1%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           + S+SD YDASSI +LEGLEPVR RPGMYIGGTDE+ALHH+ +E++DN+MDE +AG+AN 
Sbjct: 7   SPSSSDTYDASSIEVLEGLEPVRQRPGMYIGGTDERALHHMVAEILDNSMDEAVAGHANR 66

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV L  +  LTV DNGRGIP++ HPKFP+KS LE+IL TLHAGGKF    Y+ SGGLHG
Sbjct: 67  IEVELHEDYSLTVRDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQTSGGLHG 126

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALSD L V VA+   +F Q+FSRG PL  +EK     N+RGT +TF  D +IF
Sbjct: 127 VGSSVVNALSDSLVVQVAKNKELFEQRFSRGKPLGGVEKIGAAPNRRGTTVTFHADEEIF 186

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
           G    F  ARL K+ +SKAYL   V+  W   K        P++  F+FPGGL+ YL   
Sbjct: 187 GS-HRFKPARLFKLVRSKAYLFSGVEIRW---KSAITDGETPQEATFHFPGGLRDYLTEV 242

Query: 277 LENRSLISSEIFTGKTE--KKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESG 333
           L   S+ +   F GK E  +K    G VEWAI W    +    SYCNT+ T EGGTH +G
Sbjct: 243 LGKSSVYADAPFAGKVEFREKFGEPGYVEWAINWTPSRDGFTQSYCNTVPTPEGGTHVAG 302

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
              A+ +GIK Y EL  NK+A  I  DDLM     ++S FI +P F GQTK +L +  A 
Sbjct: 303 FWAAILKGIKAYGELVGNKKAAQITRDDLMAGGCALVSCFIADPAFVGQTKDRLSTEGAA 362

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
           + VEN++RD FD++L  +   A  +L+++I R+EERLRR++++E  RK+A +KLRLPGKL
Sbjct: 363 KMVENSVRDHFDNWLAADTKSAGAILDFLILRAEERLRRKQEKETQRKSATKKLRLPGKL 422

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
            DC+     GTELFIVEGDSAGGS K AR+R  QA+LPL+GKILNV  A S K+ +N +I
Sbjct: 423 TDCTSKDRAGTELFIVEGDSAGGSGKGARHREYQALLPLKGKILNVLGAASGKLTSNAEI 482

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            DL +ALG    +++  +DLRY+K+IIMTDADVDGAHIASLL+TFF+ +M  LI+  HL+
Sbjct: 483 RDLCEALGVGLGTKFNLDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDGGHLY 542

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           L  PPLFR+TQG K VY  DE  +   LE+    GKGKI++SRFKGLGEM A  LKET M
Sbjct: 543 LACPPLFRLTQGAKRVYCLDEAERDMWLEK-GLGGKGKIDVSRFKGLGEMDAKDLKETTM 601

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D   R L++V I++D     +T D + +LMG K + RF++IQE A F++++ 
Sbjct: 602 DPKTRKLIQVTIDEDE--PGETGDLVERLMGKKPELRFQYIQENAKFVEELD 651


>gi|228474176|ref|ZP_04058913.1| DNA gyrase, B subunit [Staphylococcus hominis SK119]
 gi|228271871|gb|EEK13208.1| DNA gyrase, B subunit [Staphylococcus hominis SK119]
          Length = 640

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 259/655 (39%), Positives = 384/655 (58%), Gaps = 20/655 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            ++ + +DNY A  I++LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AGYA
Sbjct: 1   MSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYA 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           N IEV ++ + ++ V DNGRGIPV+   K   +  +E+ILT LHAGGKF    Y++SGGL
Sbjct: 61  NQIEVVIENDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS +L V V R  TI+ Q + +G+P   L++     +K GT I F+ D +
Sbjct: 120 HGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVGST-DKTGTVIRFKADSE 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   ++   L K  +  A+L+  +      ++E  E+     ++ +++ GG+K+Y++
Sbjct: 179 IFSETTVYNYETLQKRIRELAFLNKGISITLRDEREDKEQ----REDTYHYEGGIKSYVE 234

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              EN+  I  E       K       VE AI +       + SY N I T EGGTHE G
Sbjct: 235 LLNENKEPIHDEPIYIHQSKDDI---EVEIAIQYNSGYATNLLSYANNIHTYEGGTHEDG 291

Query: 334 LRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            + ALTR +  Y   ++  +        +D       ++SV    P+F GQTKTKL + +
Sbjct: 292 FKRALTRVLNSYGTQSKIIKDDKERLSGEDTREGLTAVVSVKHGNPQFEGQTKTKLGNSE 351

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            ++ V+    + F+ +L +NP  A  ++E  I  S  R+  +K RE   RK+A+    LP
Sbjct: 352 VRQIVDRLFSEHFERFLYENPNVARIIVEKGIMASRARVAAKKAREVTRRKSALEISSLP 411

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS      +E+F+VEGDSAGGS K+ R+   QA+LPLRGKILNV  A  ++I NN
Sbjct: 412 GKLADCSSKNPDESEIFLVEGDSAGGSTKEGRDSKTQAILPLRGKILNVEKARLDRILNN 471

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
            +I  ++ A G     ++     RY K++IMTDADVDGAHI +LLLTFFY+ M  LIE  
Sbjct: 472 NEIRQMITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAG 531

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPL+++TQG +  Y  ++    K+  E   +   K +ISR+KGLGEM A QL E
Sbjct: 532 YVYIAQPPLYKLTQGKQKYYVFNDRELDKLKAEL--NPTPKWQISRYKGLGEMNADQLWE 589

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T M+   R +L+V++   +    +   +   LMG   + R +FI++ A +  ++ 
Sbjct: 590 TTMNPENRMMLQVKLEDAV----EADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 639


>gi|53711588|ref|YP_097580.1| DNA gyrase B subunit [Bacteroides fragilis YCH46]
 gi|60679839|ref|YP_209983.1| DNA gyrase subunit B [Bacteroides fragilis NCTC 9343]
 gi|253564361|ref|ZP_04841818.1| subunit B [Bacteroides sp. 3_2_5]
 gi|265764971|ref|ZP_06093246.1| DNA gyrase, B subunit [Bacteroides sp. 2_1_16]
 gi|52214453|dbj|BAD47046.1| DNA gyrase B subunit [Bacteroides fragilis YCH46]
 gi|60491273|emb|CAH06021.1| DNA gyrase subunit B [Bacteroides fragilis NCTC 9343]
 gi|251948137|gb|EES88419.1| subunit B [Bacteroides sp. 3_2_5]
 gi|263254355|gb|EEZ25789.1| DNA gyrase, B subunit [Bacteroides sp. 2_1_16]
 gi|301161359|emb|CBW20899.1| DNA gyrase subunit B [Bacteroides fragilis 638R]
          Length = 652

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 260/660 (39%), Positives = 388/660 (58%), Gaps = 21/660 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
            N + + +Y A SI++LEGLE VR RP MYIG    K LHHL  E++DN++DE +AGY +
Sbjct: 5   QNPTNNGSYSADSIQVLEGLEAVRKRPAMYIGDISVKGLHHLVYEIVDNSIDEALAGYCD 64

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            IEV+++ +  +TV DNGRGIPV+ H K   KS LE+ +T LHAGGKFD  +Y++SGGLH
Sbjct: 65  HIEVTINEDNSITVQDNGRGIPVDFHEK-EQKSALEVAMTVLHAGGKFDKGSYKVSGGLH 123

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+S VNALS  +   V R   I+ Q++  G PL P+++   + +  GT+  F PD  I
Sbjct: 124 GVGMSCVNALSTHMTTQVFRNGKIYQQEYEIGKPLYPVKEVG-IADHTGTKQQFWPDDSI 182

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   +D   L    +  AYL+  ++   +  + +  + G  + E FY   GL+ +++ 
Sbjct: 183 FTETI-YDYKILASRLRELAYLNAGLRISLTD-RRVVNEDGSFKHETFYSEEGLREFVRF 240

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              +R  + +++    TEK+      +E AI +       I SY N I T EGGTH +G 
Sbjct: 241 IESSREHLINDVIYLNTEKQNIP---IEVAIMYNTGFSENIHSYVNNINTIEGGTHLAGF 297

Query: 335 RVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +KKYAE ++   K  + I  DD       ++SV + EP+F GQTKTKL + + 
Sbjct: 298 RRALTRTLKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEV 357

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
              V+ A+ +  ++YL ++P EA  +++ VI  +  R   RK RE+ ++ + +    LPG
Sbjct: 358 MGAVDQAVGEVLNYYLEEHPKEAKAIVDKVILAATARHAARKAREMVQRKSPMSGGGLPG 417

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS       ELF+VEGDSAGG+AKQ RNR+ QA+LPLRGKILNV  A   K   ++
Sbjct: 418 KLADCSDKDPQKCELFLVEGDSAGGTAKQGRNRAFQAILPLRGKILNVEKAMYHKALESE 477

Query: 512 QIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           +I ++  ALG    ++        + LRY K+IIMTDADVDG+HI +L++TFF++ M  +
Sbjct: 478 EIRNIYTALGVTIGTEEDSKAANIDKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQI 537

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           I+  +L++ +PPL+   +G    Y   +  +QK ++ +    +  I   R+KGLGEM A 
Sbjct: 538 IQNGYLYIATPPLYLCKKGKIEEYCWTDAQRQKFIDTYGGGSENAIHTQRYKGLGEMNAQ 597

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           QL ET MD   R L +V I+    +  +     + LMG     R +FI+E A++  ++  
Sbjct: 598 QLWETTMDPENRMLKQVNID----NAAEADYIFSMLMGEDVGPRREFIEENATYA-NIDA 652


>gi|189502463|ref|YP_001958180.1| hypothetical protein Aasi_1109 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497904|gb|ACE06451.1| hypothetical protein Aasi_1109 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 651

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 265/656 (40%), Positives = 382/656 (58%), Gaps = 21/656 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
             Q   + Y A SI++LEGLE VR RP MYIG    K LHHL  EV+DN++DE +AGY  
Sbjct: 3   ETQKLQNTYSADSIQVLEGLEAVRKRPAMYIGDIGPKGLHHLVWEVVDNSIDEALAGYCT 62

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I+V +  +  +TV DNGRGIP + H K   +S LE+++T LHAGGKFD  TY++SGGLH
Sbjct: 63  TIKVQIHSDNSITVSDNGRGIPTDIHAK-EKRSALEVVMTVLHAGGKFDKGTYKVSGGLH 121

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+S VNALS  L  TV R   I+ Q++++G PL P+++       RGT I F+PD  I
Sbjct: 122 GVGVSCVNALSTHLQATVYRDGKIYQQEYAKGAPLYPVKEVGTTT-LRGTTIHFQPDDSI 180

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     ++ + +       AYL+  +    +  +E  ++     +E F+  GGL  ++  
Sbjct: 181 FTT-TTYNYSTIAARLGELAYLNAGLTIELTDLREQDQEG-NFLQETFHSEGGLAEFVAY 238

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             + R  +  +    + EK   +   V+ A+++       + SY N I T EGGTH +G 
Sbjct: 239 LDDAREKLIPQPIYMEGEK---YDVPVQVALSYNTGFTENVVSYVNNINTIEGGTHVAGF 295

Query: 335 RVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +K YAE +    K  + I+ DD       ++SV + EP+F GQTKTKL + + 
Sbjct: 296 RRALTRTLKSYAEKSNLLEKAKVEIVGDDFREGLTAVISVKVSEPQFEGQTKTKLGNAEV 355

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPG 451
              V++ + +   +YL ++P EA  ++  VI  ++ R   RK RE+  RK  +    LPG
Sbjct: 356 VGAVDSCVSETLQNYLEEHPQEAKIIVSKVILAAQARHAARKAREMVQRKNVLTGGGLPG 415

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS N     EL++VEGDSAGG+AKQ R+R  QA+LPLRGKILNV  A   +I +N+
Sbjct: 416 KLADCSDNDPAACELYLVEGDSAGGTAKQGRDRRFQAILPLRGKILNVEKAQEHRIYDNE 475

Query: 512 QIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           Q+ +++ ALG    ++        E LRY KVIIMTDADVDG+HI +L+LTFFY+ +  L
Sbjct: 476 QLRNMIMALGITFGTEEDAKAVNLEKLRYHKVIIMTDADVDGSHIRTLILTFFYRYLKVL 535

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLA 625
           +E+  L++  PPL+ + +G++S Y   E+ +   +++F   GK   + I R+KGLGEM A
Sbjct: 536 LERGFLYIALPPLYLVKRGSESRYCWTEQDRIAAVKDFSPDGKTESVNIQRYKGLGEMNA 595

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
            QL  T MD   R+L +V I     S  +     + LMG +   R  FIQ  A + 
Sbjct: 596 EQLWTTTMDPAVRSLKQVTIE----SAAEADHLFSILMGDEVAPRRDFIQLHAKYA 647


>gi|167764147|ref|ZP_02436274.1| hypothetical protein BACSTE_02530 [Bacteroides stercoris ATCC
           43183]
 gi|167698263|gb|EDS14842.1| hypothetical protein BACSTE_02530 [Bacteroides stercoris ATCC
           43183]
          Length = 653

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 262/661 (39%), Positives = 388/661 (58%), Gaps = 22/661 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
              +   NY AS+I++LEGLE VR RP MYIG    K LHHL  EV+DN++DE +AGY +
Sbjct: 5   EKINGESNYSASNIQVLEGLEAVRKRPAMYIGDISSKGLHHLVYEVVDNSIDEALAGYCD 64

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            IEV+++ +  +TV DNGRGIPV+ H K   KS LE+++T LHAGGKFD  +Y++SGGLH
Sbjct: 65  HIEVTINEDNSITVQDNGRGIPVDFHEK-EQKSALEVVMTVLHAGGKFDKGSYKVSGGLH 123

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+S VNALS  +   V R   I+ Q++  G PL  +++        GTR  F PD  I
Sbjct: 124 GVGVSCVNALSTHMTTQVFRNGKIYQQEYECGHPLYSVKEVG-TTAITGTRQQFWPDATI 182

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   +    L    +  AYL+  +K   +  + + E+ G  ++E FY   GLK +++ 
Sbjct: 183 FTETV-YSYDILATRMRELAYLNAGIKITLTDLR-VKEEDGSYKQEVFYSVEGLKEFVRY 240

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              +R  + +++    TEK+GT    VE AI +       I SY N I T EGGTH +G 
Sbjct: 241 IDSSREHLVNDVIYINTEKQGTP---VEVAIMYNTSYNENIHSYVNNINTIEGGTHLAGF 297

Query: 335 RVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +KKYAE  +   K  + I  DD       ++S+ + EP+F GQTKTKL + + 
Sbjct: 298 RRALTRTLKKYAEDNKMLEKAKVEISGDDFREGLTAVISIKVAEPQFEGQTKTKLGNNEV 357

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
              V+ A+ +   +YL ++P EA  +++ VI  ++ R+  RK RE  ++ + +    +PG
Sbjct: 358 MGAVDQAVGEALSYYLEEHPKEAKMIVDKVILAAQARVAARKARESVQRKSPMSGGGMPG 417

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS       ELF+VEGDSAGGSAKQ RNR+ QA+LPLRGKILNV  A   K   + 
Sbjct: 418 KLADCSSKDPEECELFLVEGDSAGGSAKQGRNRTFQAILPLRGKILNVEKAMWHKAFESD 477

Query: 512 QIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           ++ +++QALG R         +   + LRY+KVIIMTDADVDG+HI +L++T F++    
Sbjct: 478 EVNNIIQALGIRFGVDGEDSKEANIDKLRYKKVIIMTDADVDGSHIDTLIMTLFFRYFPQ 537

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           +I+Q +L++ +PPL+  T+G    Y   ++ +QK ++ +    +  +   R+KGLGEM  
Sbjct: 538 VIQQGYLYIATPPLYLCTKGKVKEYCWTDQQRQKFIDTYGGGSENAVHTQRYKGLGEMNP 597

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL ET M+   R L +V +     +  +   + + LMG     R  FI++ A++  ++ 
Sbjct: 598 EQLWETTMNPENRMLKQVHLE----NAAEADYTFSMLMGEDVGPRRDFIEKNATYA-NID 652

Query: 686 T 686
            
Sbjct: 653 A 653


>gi|319898877|ref|YP_004158970.1| topoisomerase protein [Bartonella clarridgeiae 73]
 gi|319402841|emb|CBI76392.1| topoisomerase protein [Bartonella clarridgeiae 73]
          Length = 692

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 428/695 (61%), Positives = 525/695 (75%), Gaps = 14/695 (2%)

Query: 1   MTDDSIDLFSTLPPQSQGSSE---------KLKKSGEIPDSPAFANQSASDNYDASSIRI 51
           M D++ DLFS L                    ++        +  N +  D Y A SIR+
Sbjct: 1   MNDNNKDLFSILNNAQSRIEAKEKNKQISLNSQEVSRAIPVSSSKNNTEEDEYSALSIRV 60

Query: 52  LEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVD 111
           LEGLEPVR+RPGMYIGGTD KALHHLFSE+IDNAMDE +AGYA+LI+VSLD  G+LTV D
Sbjct: 61  LEGLEPVRLRPGMYIGGTDSKALHHLFSEIIDNAMDEAVAGYADLIDVSLDRQGYLTVTD 120

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171
           NGRGIPVENHP+ P+KSTLE+I+T LH+G KFD   Y+ SGGLHGVGISVVNALSD++ V
Sbjct: 121 NGRGIPVENHPQMPDKSTLEVIMTQLHSGAKFDGKAYQTSGGLHGVGISVVNALSDDMEV 180

Query: 172 TVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMT 231
            VAR+  ++ Q+FSRGIP S LE    V N+RGTR+ F PD KIFG+K  F+  ++ KM 
Sbjct: 181 EVARERKLYRQRFSRGIPQSGLENLGDVYNRRGTRVRFHPDSKIFGEKVAFEPGQIYKMA 240

Query: 232 QSKAYLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
           +SKAYL G VK  W+CD  + E    IPEK  F+FP GLK YL + L+N   ++SE+F+G
Sbjct: 241 RSKAYLFGGVKIRWNCDPIMLEGIKAIPEKAVFHFPDGLKDYLLSSLKNEYRVTSEVFSG 300

Query: 291 KTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
           KT++ G H G+VEWAIAW   N  + SYCNTI T EGGTHE+GLR AL RG+K YAEL  
Sbjct: 301 KTKRHGDH-GSVEWAIAWYGGNACVQSYCNTIPTGEGGTHEAGLRQALLRGLKAYAELIG 359

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
           NKR+  I SDD+MISA+ ILSVFIREPEF GQTK +L +++AQR VENA+RDPFDH+L  
Sbjct: 360 NKRSAIITSDDVMISAIAILSVFIREPEFVGQTKDRLATIEAQRIVENAIRDPFDHWLAN 419

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           +P EATKLL+WVIER+EER++RR+ RE+NRKT +RKLRLPGKLADCSQN A G ELFIVE
Sbjct: 420 SPQEATKLLDWVIERAEERVKRRQDREINRKTVVRKLRLPGKLADCSQNSAAGAELFIVE 479

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530
           GDSAGGSAKQARNR NQA+LPLRGKILNVASA  EK+ ++Q I DL+ ALGC TRS+YRE
Sbjct: 480 GDSAGGSAKQARNRVNQAILPLRGKILNVASAAREKMSSSQTISDLILALGCGTRSKYRE 539

Query: 531 EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVY 590
           +DLRYE++IIMTDADVDGAHIASLL+TFF+QEM DLI Q HL+L  PPL+RI+QG K  Y
Sbjct: 540 DDLRYERIIIMTDADVDGAHIASLLITFFFQEMPDLIRQGHLYLAVPPLYRISQGGKVAY 599

Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
           A D+ HK ++L+      K KIEI RFKGLGEM A QLKET M   KRTLLR+ I+    
Sbjct: 600 ARDDIHKDELLKTEFTE-KAKIEIGRFKGLGEMRAEQLKETTMHPQKRTLLRIVIDSV-- 656

Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +++T++++  LMGTK + RF+FIQE ++F D++ 
Sbjct: 657 DMQETKNTVENLMGTKPEARFRFIQENSTFADNLD 691


>gi|314935205|ref|ZP_07842558.1| DNA gyrase, B subunit [Staphylococcus hominis subsp. hominis C80]
 gi|313656540|gb|EFS20279.1| DNA gyrase, B subunit [Staphylococcus hominis subsp. hominis C80]
          Length = 644

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 258/657 (39%), Positives = 382/657 (58%), Gaps = 20/657 (3%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
              ++ + +DNY A  I++LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AG
Sbjct: 3   NTLSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 62

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           YAN IEV ++ + ++ V DNGRGIPV+   K   +  +E+ILT LHAGGKF    Y++SG
Sbjct: 63  YANQIEVVIENDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 121

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG SVVNALS +L V V R  TI+ Q + +G+P   L++        GT I F+ D
Sbjct: 122 GLHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVGSTEK-TGTVIRFKAD 180

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            +IF +   ++   L K  +  A+L+  +      ++E  E+     ++ +++ GG+K+Y
Sbjct: 181 SEIFSETTVYNYETLQKRIRELAFLNKGISITLRDEREDKEQ----REDTYHYEGGIKSY 236

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++   EN+  I  E       K       VE AI +       + SY N I T EGGTHE
Sbjct: 237 VELLNENKEPIHDEPIYIHQSKDDI---EVEIAIQYNSGYATNLLSYANNIHTYEGGTHE 293

Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G + ALTR +  Y   ++  +        +D       ++SV    P+F GQTKTKL +
Sbjct: 294 DGFKRALTRVLNSYGTQSKIIKDDKERLSGEDTREGLTAVVSVKHGNPQFEGQTKTKLGN 353

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448
            + ++ V+    + F+ +L +NP  A  ++E  I  S  R+  +K RE   RK+A+    
Sbjct: 354 SEVRQIVDRLFSEHFERFLYENPNVARIIVEKGIMASRARVAAKKAREVTRRKSALEISS 413

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS      +E+F+VEGDSAGGS K+ R+   QA+LPLRGKILNV  A  ++I 
Sbjct: 414 LPGKLADCSSKNPDESEIFLVEGDSAGGSTKEGRDSKTQAILPLRGKILNVEKARLDRIL 473

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           NN +I  ++ A G     ++     RY K++IMTDADVDGAHI +LLLTFFY+ M  LIE
Sbjct: 474 NNNEIRQMITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 533

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             ++++  PPL+++TQG +  Y  ++    K+  E   +   K +ISR+KGLGEM A QL
Sbjct: 534 AGYVYIAQPPLYKLTQGKQKYYVFNDRELDKLKAEL--NPTPKWQISRYKGLGEMNADQL 591

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            ET M+   R +L+V++   +    +   +   LMG   + R +FI++ A +  ++ 
Sbjct: 592 WETTMNPENRMMLQVKLEDAV----EADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 643


>gi|305664998|ref|YP_003861285.1| DNA gyrase subunit B [Maribacter sp. HTCC2170]
 gi|88707410|gb|EAQ99655.1| DNA gyrase subunit B [Maribacter sp. HTCC2170]
          Length = 646

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 260/661 (39%), Positives = 382/661 (57%), Gaps = 24/661 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + ++   NY A SI+ LEG+E VRMRP MYIG    + LHHL  EV+DN++DE + G+ 
Sbjct: 1   MSEEANKKNYSADSIQALEGMEHVRMRPSMYIGDVGVRGLHHLVYEVVDNSIDEAMGGHC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I+V+++ +  +T  DNGRGIPV+ H K    S LE+++T + AGGKFD  +Y++SGGL
Sbjct: 61  DRIDVTINEDNSITTRDNGRGIPVDLHKK-EGVSALEVVMTKIGAGGKFDKDSYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+S VNALSD L  TV R   I+ Q++ RG  L P++   + +  RGT +TF PD  
Sbjct: 120 HGVGVSCVNALSDHLKATVFRDGKIWEQEYERGKSLYPVKSVGETKE-RGTEVTFHPDTT 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     +    L    +  +YL+  V    +  ++  EK      E F    GLK +++
Sbjct: 179 IFTQTIEYSYETLSNRMRELSYLNKGVTISITDKRQKDEKG-EFVSESFVSTEGLKEFVR 237

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333
               NR  ++  + + + EK G     VE A+ +     E    Y N I T EGGTH SG
Sbjct: 238 FLDGNREALTQGVISMEGEKNGIP---VEVAMVYNTSYTENLHSYVNNINTHEGGTHLSG 294

Query: 334 LRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R  LT  +KKYA+ +    K    +  DD       I+SV + EP+F GQTKTKL + +
Sbjct: 295 FRRGLTSTLKKYADASGMLDKLKFEVQGDDFREGLTAIVSVKVAEPQFEGQTKTKLGNRE 354

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLP 450
               V  ++ +   +YL ++P +A  +++ VI  ++ R    K RE+  RKT +    LP
Sbjct: 355 VSSAVSQSVSEMLTNYLEEHPDDAKIIVQKVILAAQARHAATKAREMVQRKTVMSIGGLP 414

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL+DCS       E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV  A   K+  N
Sbjct: 415 GKLSDCSDQDPVNCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFEN 474

Query: 511 QQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           ++I ++  ALG    ++        E LRY KV+IM DADVDG+HI +L+LTFF++ M +
Sbjct: 475 EEIKNIYTALGVTIGTEEDSKALNLEKLRYHKVVIMCDADVDGSHIETLILTFFFRYMRE 534

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           LIE  H+++ +PPL+ + +G+K  YA  +E + +I E F     G + I R+KGLGEM A
Sbjct: 535 LIENGHVYIATPPLYLVKKGSKKRYAWSDEERDEIAESF----NGSVGIQRYKGLGEMNA 590

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL +T M+   RTL ++ I+    S        + LMG +   R +FI++ A +  ++ 
Sbjct: 591 EQLWDTTMNPEFRTLRQITIDNATES----DRVFSMLMGDEVPPRREFIEKNAVYA-NID 645

Query: 686 T 686
            
Sbjct: 646 A 646


>gi|329954160|ref|ZP_08295255.1| DNA gyrase, B subunit [Bacteroides clarus YIT 12056]
 gi|328528137|gb|EGF55117.1| DNA gyrase, B subunit [Bacteroides clarus YIT 12056]
          Length = 653

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 261/661 (39%), Positives = 390/661 (59%), Gaps = 22/661 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
              +   NY AS+I++LEGLE VR RP MYIG    K LHHL  EV+DN++DE +AGY +
Sbjct: 5   EKINGESNYSASNIQVLEGLEAVRKRPAMYIGDISIKGLHHLVYEVVDNSIDEALAGYCD 64

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            IEV+++ +  +TV DNGRGIPV+ H K   KS LE+++T LHAGGKFD  +Y++SGGLH
Sbjct: 65  HIEVTINEDNSITVQDNGRGIPVDFHEK-EQKSALEVVMTVLHAGGKFDKGSYKVSGGLH 123

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+S VNALS  +   V R   I+ Q++  G PL  +++     +  GTR  F PD  I
Sbjct: 124 GVGVSCVNALSTHMTTQVFRNGKIYQQEYECGHPLYSVKEVG-TTDITGTRQQFWPDDTI 182

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   ++   L    +  AYL+  +K   +  + + E+ G  ++E FY   GLK +++ 
Sbjct: 183 FTETV-YNYDILATRMRELAYLNAGIKITLTDLR-VKEEDGSYKQEIFYSVEGLKEFVRY 240

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              +R  + +++    TEK+GT    VE AI +       I SY N I T EGGTH +G 
Sbjct: 241 IDSSREHLVNDVIYINTEKQGTP---VEVAIMYNTSYNENIHSYVNNINTIEGGTHLAGF 297

Query: 335 RVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +KKYAE  +   K  + I  DD       ++S+ + EP+F GQTKTKL + + 
Sbjct: 298 RRALTRTLKKYAEDNKMLEKAKVEISGDDFREGLTAVISIKVAEPQFEGQTKTKLGNNEV 357

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
              V+ A+ +   +YL ++P E+  +++ VI  ++ R+  RK RE  ++ + +    +PG
Sbjct: 358 MGAVDQAVGEALSYYLEEHPKESKMIVDKVILAAQARVAARKARESVQRKSPMSGGGMPG 417

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS       ELF+VEGDSAGGSAKQ RNR+ QA+LPLRGKILNV  A   K   + 
Sbjct: 418 KLADCSSKDPEECELFLVEGDSAGGSAKQGRNRAFQAILPLRGKILNVEKAMWHKAFESD 477

Query: 512 QIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           ++ +++QALG R         +   + LRY+KVIIMTDADVDG+HI +L++T F++    
Sbjct: 478 EVNNIIQALGIRFGVDSEDSKEANIDKLRYKKVIIMTDADVDGSHIDTLIMTLFFRYFPQ 537

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           +I+Q +L++ +PPL+  T+G    Y   ++ +QK ++ +    +  +   R+KGLGEM  
Sbjct: 538 VIQQGYLYIATPPLYLCTKGKVKEYCWTDQQRQKFIDTYGGGSENAVHTQRYKGLGEMNP 597

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL ET M+   R L +V +     +  +   + + LMG     R  FI++ A++  ++ 
Sbjct: 598 EQLWETTMNPENRMLKQVHLE----NAAEADYTFSMLMGEDVGPRRDFIEKNATYA-NID 652

Query: 686 T 686
            
Sbjct: 653 A 653


>gi|218131840|ref|ZP_03460644.1| hypothetical protein BACEGG_03461 [Bacteroides eggerthii DSM 20697]
 gi|317474545|ref|ZP_07933819.1| DNA gyrase, subunit B [Bacteroides eggerthii 1_2_48FAA]
 gi|217986143|gb|EEC52482.1| hypothetical protein BACEGG_03461 [Bacteroides eggerthii DSM 20697]
 gi|316909226|gb|EFV30906.1| DNA gyrase, subunit B [Bacteroides eggerthii 1_2_48FAA]
          Length = 653

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 263/661 (39%), Positives = 391/661 (59%), Gaps = 22/661 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
              +  +NY AS+I++LEGLE VR RP MYIG    K LHHL  EV+DN++DE +AGY +
Sbjct: 5   EKINGENNYSASNIQVLEGLEAVRKRPAMYIGDISIKGLHHLVYEVVDNSIDEALAGYCD 64

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            IEV+++ +  +TV DNGRGIPV+ H K   KS LE+++T LHAGGKFD  +Y++SGGLH
Sbjct: 65  HIEVTINEDNSITVQDNGRGIPVDFHEK-EQKSALEVVMTVLHAGGKFDKGSYKVSGGLH 123

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+S VNALS  +   V R   I+ Q++  G PL  +++   V    GTR  F PD  I
Sbjct: 124 GVGVSCVNALSTHMTTQVFRNGKIYQQEYECGHPLYSVKEVG-VTEITGTRQQFWPDDTI 182

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   ++   L    +  AYL+  +K   +  + + E+ G  ++E FY   GLK +++ 
Sbjct: 183 FTETV-YNYDILATRMRELAYLNAGIKITLTDLR-VKEEDGNYKQEIFYSVEGLKEFVRY 240

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              +R  + +++    TEK+GT    VE AI +       I SY N I T EGGTH +G 
Sbjct: 241 IDSSREHLVNDVIYINTEKQGTP---VEVAIMYNTSYNENIHSYVNNINTIEGGTHLAGF 297

Query: 335 RVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +KKYAE  +   K  + I  DD       ++S+ + EP+F GQTKTKL + + 
Sbjct: 298 RRALTRTLKKYAEDNKMLEKAKVEISGDDFREGLTAVISIKVAEPQFEGQTKTKLGNNEV 357

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
              V+ A+ +   +YL ++P E+  +++ VI  ++ R+  RK RE  ++ + +    +PG
Sbjct: 358 MGAVDQAVGEALSYYLEEHPKESKMIVDKVILAAQARVAARKARESVQRKSPMSGGGMPG 417

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS       ELF+VEGDSAGGSAKQ RNR+ QA+LPLRGKILNV  A   K   + 
Sbjct: 418 KLADCSSKDPEECELFLVEGDSAGGSAKQGRNRTFQAILPLRGKILNVEKAMWHKAFESD 477

Query: 512 QIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           ++ +++QALG R         +   + LRY+KVIIMTDADVDG+HI +L++T F++    
Sbjct: 478 EVNNIIQALGIRFGVDGEDSKEANIDKLRYKKVIIMTDADVDGSHIDTLIMTLFFRYFPQ 537

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           +I+Q +L++ +PPL+  T+G    Y   ++ +QK ++ +    +  I   R+KGLGEM  
Sbjct: 538 VIQQGYLYIATPPLYLCTKGKVKEYCWTDQQRQKFIDTYGGGSENAIHTQRYKGLGEMNP 597

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL ET M+   R L +V +     +  +   + + LMG     R  FI++ A++  ++ 
Sbjct: 598 EQLWETTMNPENRMLKQVHLE----NAAEADYTFSMLMGEDVGPRRDFIEKNATYA-NID 652

Query: 686 T 686
            
Sbjct: 653 A 653


>gi|332042671|gb|EGI78871.1| DNA gyrase, B subunit [Lacinutrix algicola 5H-3-7-4]
          Length = 649

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 258/653 (39%), Positives = 387/653 (59%), Gaps = 24/653 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY A SI+ LEG+E VRMRP MYIG    + LHHL  EV+DN++DE +AG+ + I V+++
Sbjct: 12  NYSADSIQALEGMEHVRMRPSMYIGDVGVRGLHHLVYEVVDNSIDEALAGHCDNITVTIN 71

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +T  D+GRGIPV+ H K    S LE+++T + AGGKFD  +Y++SGGLHGVG+S V
Sbjct: 72  EDNSITTEDDGRGIPVDLHKK-EGISALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSCV 130

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+ L  TV R   I+ Q++ RG  L P++      +KRGT +TF+PDP IF     +
Sbjct: 131 NALSEHLTATVYRNGKIWEQEYERGKSLYPVKAIGDT-DKRGTIVTFKPDPTIFTQTLEY 189

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L    +  AYL+  +       +   E     E E F+   GLK +++     R  
Sbjct: 190 NYDTLASRMRELAYLNKGITVHLIDKRSKKEDG-SYEGETFHSEEGLKEFIKFLDATREP 248

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +  ++ + + EK G     VE A+ +       + SY N I T EGGTH SG R  LT  
Sbjct: 249 LMKDVISFEGEKNGVP---VEVAMVYNTSYAENLHSYVNNINTHEGGTHLSGFRRGLTHT 305

Query: 342 IKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +KKYA+ +    K    I  DD       I+SV ++EP+F GQTKTKL + +    V  +
Sbjct: 306 LKKYADESGMLDKLKFDIAGDDFREGLTAIVSVKVQEPQFEGQTKTKLGNREVSAAVSQS 365

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQ 458
           + +    YL +NP +A  +++ VI  ++ R   +K RE+  RKT +    LPGKL+DCS+
Sbjct: 366 VSEMLSDYLEENPEDAKTIVQKVILAAQARHAAQKAREMVQRKTVMSIGGLPGKLSDCSE 425

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E+++VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV  A + K+  N++I ++  
Sbjct: 426 QDPAKCEVYLVEGDSAGGTAKQGRDRAFQAILPLRGKILNVEKAMTHKVFENEEIKNIFT 485

Query: 519 ALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
           ALG    ++   +      LRY K++IM DAD+DG+HI +L+LTFF++ M +LIE  H++
Sbjct: 486 ALGVTIGTEEDSKALNLSKLRYHKIVIMCDADIDGSHIETLILTFFFRYMKELIENGHIY 545

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           + +PPL+ I +G K  YA ++E ++ I++EF +  K    I R+KGLGEM A QL +T M
Sbjct: 546 IATPPLYLIKKGAKKQYAWNDEERKAIMQEFGESSK----IQRYKGLGEMNAEQLWDTTM 601

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           +   RTL ++ I+  +    +     + LMG +   R +FI++ A +  ++  
Sbjct: 602 NPEFRTLRQIHIDNGV----EADRVFSMLMGDEVPPRREFIEKNAIYA-NIDA 649


>gi|313674412|ref|YP_004052408.1| DNA gyrase subunit b [Marivirga tractuosa DSM 4126]
 gi|312941110|gb|ADR20300.1| DNA gyrase subunit B [Marivirga tractuosa DSM 4126]
          Length = 653

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 259/660 (39%), Positives = 384/660 (58%), Gaps = 22/660 (3%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           +    + + +Y A +I +LEGLE VR RP MYIG    K LHH+  EV+DN++DE +AG+
Sbjct: 2   STEKDNKNKDYSAGNITVLEGLEAVRKRPAMYIGDVGVKGLHHMIWEVVDNSIDEAMAGH 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
              I V ++ +  +TV+D+GRGIPV+ H K   +S LE+++T LHAGGKFD  +Y++SGG
Sbjct: 62  CTTITVEINEDNSVTVMDDGRGIPVDIHEK-EGRSALEVVMTVLHAGGKFDKDSYKVSGG 120

Query: 154 LHGVGISVVNALSDELHVTVA-RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           LHGVG+S VNALS  L  TV  R   I+ Q++S G P  P++   +  +  GT+I F+PD
Sbjct: 121 LHGVGVSCVNALSTMLKATVYSRDGKIYEQEYSEGFPKEPVKPVGET-DVTGTKIQFKPD 179

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
             IF +   F    +    +  AYL+  +K      ++  E     E E F+  GGL  +
Sbjct: 180 ASIFME-TEFKYETVASRLRELAYLNAGIKIKLQDHRDKDENGDSKE-ENFFSEGGLLEF 237

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHE 331
           ++    +R  +  +    + EK G     V+ A+ +     E   SY N I T EGGTH 
Sbjct: 238 VEYLDVSREKLIPQPIYMEGEKNGVP---VQVALNYNTSYSENVVSYVNNINTIEGGTHV 294

Query: 332 SGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           SG R ALTR +K YA+ +    K+ I I  DD       I+SV + EP+F GQTKTKL +
Sbjct: 295 SGFRRALTRTLKSYADKSGLLEKQKIEITGDDFREGLTAIISVKVAEPQFEGQTKTKLGN 354

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLR 448
            D    VE+ + +   ++L +NP  A  +++ VI  ++ R   +K RE+  RK  +    
Sbjct: 355 SDVMGAVESCVSETLQYFLEENPKAAKTIVQKVILAAQARNAAKKAREMVQRKNVMSGSG 414

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS+      EL++VEGDSAGGSAKQ R+R+ QA+LPL+GKILNV  A   KI 
Sbjct: 415 LPGKLADCSEKDPSICELYLVEGDSAGGSAKQGRDRNFQAILPLKGKILNVEKAQEHKIY 474

Query: 509 NNQQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +N +I +++ ALG R  ++  E     E LRY K++IMTDADVDG+HI +L+LT F++ M
Sbjct: 475 DNDEIKNILTALGVRFGTEDDEKALNLEKLRYHKIVIMTDADVDGSHIRTLILTLFFRYM 534

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGE 622
            +LI+  ++++  PPL+ I +G    Y   E+ + ++++E    G +G + + R+KGLGE
Sbjct: 535 RELIDMGYVYIAQPPLYLIKRGKTERYVFTEDERVEVVKEISPDGTEGAVHLQRYKGLGE 594

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           M   QL  T MD + R + +V +     S  +     + LMG +   R  FI++ A +  
Sbjct: 595 MNPEQLWTTTMDPHTRKMKQVSVE----SAAEADHLFSMLMGDEVPPRRDFIEKNAKYAK 650


>gi|315187334|gb|EFU21090.1| DNA gyrase subunit B [Spirochaeta thermophila DSM 6578]
          Length = 635

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 253/648 (39%), Positives = 384/648 (59%), Gaps = 20/648 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y A  I++L GLEPVR RPGMYIG T E+ LHHL  EV+DN++DE +AG  + IEV ++
Sbjct: 2   SYTAEQIQVLRGLEPVRKRPGMYIGSTGEEGLHHLVYEVVDNSIDEALAGVCSRIEVVIE 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
               +TV D+GRGIPV+ HP+    S LE+++T LHAGGKFD  TY++SGGLHGVG+SVV
Sbjct: 62  PGNVVTVTDDGRGIPVDLHPE-EKVSALELVMTRLHAGGKFDKKTYKVSGGLHGVGVSVV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+   V V R   I  Q++ RG+PL P+E + +      T   F+PD +IF     F
Sbjct: 121 NALSEWCEVEVHRDGKIHVQRYQRGVPLGPVEVRGRTDRTG-TTTRFKPDAEIFETT-EF 178

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L +  +  A+L+  ++      +    K  +     F + GGL+ ++    +NR+ 
Sbjct: 179 SFDILSQRLRELAFLNKGIEIVIRDLRTKRVKEHV-----FKYEGGLREFVAYLNKNRTS 233

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +  E    +  +       +E AI + +       S+ N I T EGGTH  G R ALTR 
Sbjct: 234 LQKEPIYFEGARDHV---EIECAIEYNDSYTETFFSFVNNINTKEGGTHVVGFRSALTRC 290

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +    + ++   K   ++  DD+      +LS+ + EP+F GQTKTKL + D +  VE+ 
Sbjct: 291 LNDLFKQSKFAKKLDDTLSGDDVREGLTAVLSIKVPEPQFEGQTKTKLGNSDVKGIVESF 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458
           + +    +  ++P +   +LE V++ +  R+  RK RE+ R+ + +  + LPGKLADC +
Sbjct: 351 VYEQLQAHFARHPKDGEAILEKVVQAARARIAARKARELARRKSVLESMDLPGKLADCIE 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E+FIVEGDSAGGSAKQ R+R  QA+LPL GK+LNV     EK+  N ++  ++ 
Sbjct: 411 KDPAKCEIFIVEGDSAGGSAKQGRDREFQAILPLWGKMLNVEKTRMEKVLTNDKLYPIIA 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           +LG    +++    LRY KVIIM DADVDG+HI +LLLTFFY+ M +L+E+ H+++  PP
Sbjct: 471 SLGTGIGTEFDISRLRYHKVIIMADADVDGSHIRTLLLTFFYRYMKELVERGHVYIAMPP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           L+++    +  YA+ +E + +ILE F KK+ K +I + R+KGLGEM   QL ET M+   
Sbjct: 531 LYKVWVKNEVEYAYTDEERDRILERFAKKYKKDEINVQRYKGLGEMNPEQLWETTMNPAT 590

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           R ++++ +   +    + ++    LMG +   R KFI+E A F+ ++ 
Sbjct: 591 RNIIQIRVEDAV----EAEEVFTTLMGDQVAPRRKFIEENALFVTNLD 634


>gi|160883910|ref|ZP_02064913.1| hypothetical protein BACOVA_01884 [Bacteroides ovatus ATCC 8483]
 gi|156110640|gb|EDO12385.1| hypothetical protein BACOVA_01884 [Bacteroides ovatus ATCC 8483]
          Length = 652

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 260/653 (39%), Positives = 382/653 (58%), Gaps = 21/653 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y A SI++LEGLE VR RP MYIG    K LHHL  E++DN++DE +AGY + IEV+++
Sbjct: 12  SYSADSIQVLEGLEAVRKRPAMYIGDISVKGLHHLVYEIVDNSIDEALAGYCDHIEVTIN 71

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV DNGRGIPV+ H K   KS LE+ +T LHAGGKFD  +Y++SGGLHGVG+S V
Sbjct: 72  EDNSITVQDNGRGIPVDYHEK-EKKSALEVAMTVLHAGGKFDKGSYKVSGGLHGVGMSCV 130

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  +   V R   I+ Q++  G PL  +++     +  GTR  F PD  IF +   +
Sbjct: 131 NALSTHMTTQVFRDGKIYQQEYEIGKPLYSVKEVG-TADITGTRQQFWPDNTIFTETV-Y 188

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L    +  AYL+  ++   +  + +  + G  + E+FY   GL+ +++    +R  
Sbjct: 189 DYKILASRLRELAYLNAGLRITLTD-RRVVNEDGSFKGEQFYSEEGLREFVRFIESSREH 247

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           + +++    +EK+G     +E AI +     E   SY N I T EGGTH +G R ALTR 
Sbjct: 248 LINDVIYLNSEKQGIP---IEVAIMYNTGFSENVHSYVNNINTIEGGTHLAGFRRALTRT 304

Query: 342 IKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +KKYAE ++   K  + I  DD       ++SV + EP+F GQTKTKL + +    V+ A
Sbjct: 305 LKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVMGAVDQA 364

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458
           + +   +YL ++P EA  +++ VI  +  R   RK RE+ ++ + +    LPGKLADCS 
Sbjct: 365 VGEVLAYYLEEHPKEAKTIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGKLADCSD 424

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 ELF+VEGDSAGG+AKQ RNR  QA+LPLRGKILNV  A   K   + +I ++  
Sbjct: 425 KDPSKCELFLVEGDSAGGTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESDEIRNIYT 484

Query: 519 ALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
           ALG    +         + LRY K+IIMTDADVDG+HI +L++TFF++ M  +I+  +L+
Sbjct: 485 ALGVTIGTDEDSKEANIQKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQIIQNGYLY 544

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           + +PPL+   +G    Y   +  +QK ++ +    +  I   R+KGLGEM A QL ET M
Sbjct: 545 IATPPLYLCKKGKVEEYCWTDAQRQKFIDTYGGGSENAIHTQRYKGLGEMNAQQLWETTM 604

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           D   R L +V I+    +  +     + LMG     R +FI+E A++  ++ T
Sbjct: 605 DPENRMLKQVNID----NAAEADYIFSMLMGEDVGPRREFIEENATYA-NIDT 652


>gi|291461019|ref|ZP_06026484.2| DNA gyrase, B subunit [Fusobacterium periodonticum ATCC 33693]
 gi|291379423|gb|EFE86941.1| DNA gyrase, B subunit [Fusobacterium periodonticum ATCC 33693]
          Length = 639

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 251/648 (38%), Positives = 377/648 (58%), Gaps = 20/648 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y+A +I +LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AGY N I+V + 
Sbjct: 6   SYEAQNITVLEGLEAVRKRPGMYIGTTSERGLHHLVWEIVDNSVDEALAGYCNKIDVKIL 65

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  + VVDNGRGIP + HPK+  KS LEI+LT LHAGGKF+N  Y++SGGLHGVG+SVV
Sbjct: 66  PDNIIEVVDNGRGIPTDIHPKY-GKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGVSVV 124

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKAG 221
           NALS+ L V V ++  ++ QK+ RG P   ++        + GT + F+ D  IF     
Sbjct: 125 NALSEWLEVEVRKEGNVYYQKYYRGKPEEDVKIIGSCEESEHGTTVRFKADRDIFETLI- 183

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L    +  AYL+  +    S  ++  +K        + F GG+  +L   ++  +
Sbjct: 184 YNYFTLSNRLKELAYLNRGLTITLSDLRKEEKKEET-----YKFDGGILDFLNEIVKEEA 238

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTR 340
            I  + F   +E+       V+    +   +N  I S+ N I T EGGTH  G R ALT+
Sbjct: 239 TIVDKPFYVSSEQDNV---GVDVTFTYTTSQNEVIYSFVNNINTHEGGTHVQGFRTALTK 295

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I    +       +   ++ +D+    V I+S  I +P+F GQTK KL + +    V  
Sbjct: 296 VINDVGKAQGLLKDKDGKLMGNDIREGVVAIVSTKIPQPQFEGQTKGKLGNSEISGIVNT 355

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCS 457
            + +    +L  NP     ++E ++   + R   +K RE+  + + +    LPGKLADC+
Sbjct: 356 IVSNSLKIFLEDNPAITKIVIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCT 415

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
              A   E+FIVEGDSAGGSAKQ R+R NQA+LPLRGKI+NV  AG  K   + +I  +V
Sbjct: 416 SKKAEECEIFIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMV 475

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A G      +    LRY K+I+MTDADVDGAHI +L+LTF Y+ M DLI + ++++  P
Sbjct: 476 TAFGTSIGETFDISKLRYGKIILMTDADVDGAHIRTLILTFLYRYMKDLITEGNIYIACP 535

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL++++ G + +YA+++   + +L +  +  K K  I R+KGLGEM   QL ET M+ + 
Sbjct: 536 PLYKVSSGKQIIYAYNDLELKNVLGQMNQENK-KYTIQRYKGLGEMNPEQLWETTMNPDG 594

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           R LL+V I+    + ++     +KLMG K + R +FI+E A ++ ++ 
Sbjct: 595 RLLLKVSID----NAREADMLFDKLMGDKVEPRREFIEEHAEYVKNID 638


>gi|325265438|ref|ZP_08132161.1| DNA gyrase, B subunit [Clostridium sp. D5]
 gi|324029296|gb|EGB90588.1| DNA gyrase, B subunit [Clostridium sp. D5]
          Length = 645

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 258/648 (39%), Positives = 377/648 (58%), Gaps = 19/648 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y A  I+ILEGLE VR RPGMYIG T  + LHHL  E++DNA+DE +AGY + I VS++
Sbjct: 11  EYGADQIQILEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNAVDEALAGYCDTIFVSIN 70

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
               +TV+DNGRGIPV  + K      +E++ T LHAGGKF    Y++SGGLHGVG SVV
Sbjct: 71  KGNSITVIDNGRGIPVGINHKA-GLPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGASVV 129

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR-GTRITFRPDPKIFGDKAG 221
           NALS  L V +  +  I+ Q++ RG  +  L    +  +++ GT++TF PD +IF +   
Sbjct: 130 NALSQWLEVEIYNEGKIYKQRYERGKVVDKLRVVGECEDEKSGTKVTFFPDDEIFEETV- 188

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L +  +  A+L+  +K     ++          ++ F++ GG+K ++     +++
Sbjct: 189 FDYDTLKQRFREMAFLTKGLKIVLRDER-----GEELVEKVFHYEGGIKEFVTYLNRSKT 243

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALTR 340
            +  +I   +  K       VE A+   +   + T  + N I T EGGTH  G R ALT+
Sbjct: 244 ALYEQIIYCEGMKDNV---AVEVAMQHNDSYSDNTYGFVNNITTPEGGTHVVGFRNALTK 300

Query: 341 GIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
               YA   +  +    ++  +D+      I+SV I +P+F GQTK KL + +A+  V+N
Sbjct: 301 TFNDYARKNKLLKDSEPNLSGEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARGAVDN 360

Query: 399 ALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
            +    + +L QNP  A   +E  V+ +      R+ +    RK+A+  + LPGKLADCS
Sbjct: 361 IVSTQLEIFLEQNPNVAKMTVEKSVMAQRAREAARKARDLTRRKSALEGMSLPGKLADCS 420

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                  E++IVEGDSAGGSAK AR+RS QA+LPLRGKILNV  A  +KI  N +I  ++
Sbjct: 421 DKDPKNCEIYIVEGDSAGGSAKTARDRSTQAILPLRGKILNVEKARLDKIYANAEIKAMI 480

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A G      +    LRY K+IIMTDADVDGAHI++LLLTF Y+ M DLI+  +++L  P
Sbjct: 481 TAFGTGIHDDFEITKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKDGYVYLAQP 540

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+++ +  K  YA+ +E   +IL E  + G  K  I R+KGLGEM A QL ET MD   
Sbjct: 541 PLYKLEKNKKVWYAYSDEELSQILSEVGRDGNNK--IQRYKGLGEMDAEQLWETTMDPEH 598

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           R LLRV +++   +  +   +   LMG K + R +FI+E A ++ ++ 
Sbjct: 599 RILLRVTMDE--ETSSELDLTFTTLMGDKVEPRREFIEENAKYVQNLD 644


>gi|309791890|ref|ZP_07686373.1| DNA gyrase, B subunit [Oscillochloris trichoides DG6]
 gi|308226062|gb|EFO79807.1| DNA gyrase, B subunit [Oscillochloris trichoides DG6]
          Length = 636

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 249/652 (38%), Positives = 371/652 (56%), Gaps = 22/652 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            +   +YDAS I +LEGL+ VR RPGMYIG TD   LHH+  EV+DN++DE +AGYA+ I
Sbjct: 2   TTEPQSYDASQITVLEGLDAVRKRPGMYIGPTDINGLHHMIKEVVDNSVDEALAGYADTI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            +++  +G + V DNGRGIPV+ HPK    S L++  T LHAGGKF +  Y++S GLHGV
Sbjct: 62  TITIFADGSVQVTDNGRGIPVDIHPKH-QVSALQLAATELHAGGKFGDGGYKVSSGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+ +   V R + ++ Q++  G P  P+    +     GT I F PD  IF 
Sbjct: 121 GLSVVNALSEWMRAEVRRHDKLWLQEYRTGKPQGPVVAVGEAEG-TGTSIHFMPDVTIFK 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           D   +    + +  +  AYL+  ++  +   +   E         FYF GG+ +Y++   
Sbjct: 180 DGIDYQFRVVAQRLREMAYLTKGLRFKFEDQRTQNE-------VSFYFEGGIISYVRHLN 232

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLR 335
           + +  +    F  +   +      VE A+ + +        ++ N I   +GG H SG R
Sbjct: 233 KAKGALHRLPFYVE---RTVGEVAVEVAMQYTDTYDTDSIYAFANNINNTDGGAHLSGFR 289

Query: 336 VALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR I  YA      +    ++  DD+      ++SV +++P+F+ QTK KLVS +A 
Sbjct: 290 TALTRVINTYARNKNLLKENDANLTGDDVREGLTAVISVKLKDPQFSSQTKEKLVSPEAA 349

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
             V   + D F  +L +NP EA +++E  +  +  RL  +K R+  RK+A+    LPGKL
Sbjct: 350 SAVGTVMGDAFGTWLDENPTEARRIIEKAVSAARTRLAVQKVRDTARKSAMDGFSLPGKL 409

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS +    +EL+IVEGDSAGG+AKQ R+R  QA+LPLRGKILNV  +  +K+ +N ++
Sbjct: 410 ADCSDSNPARSELYIVEGDSAGGTAKQGRDRRFQAILPLRGKILNVEKSRIDKMLSNAEV 469

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             L+ A+G      +  E LRY ++I+M DADVDG+HI +LLLTFF++ M  LI   HL+
Sbjct: 470 KALITAIGASIGELFSTEKLRYHRIILMADADVDGSHIRTLLLTFFFRHMRQLITSGHLY 529

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           +  PPL+RI  G + VY + +  +   L +     K   +I R+KGLGEM A QL ET +
Sbjct: 530 IAQPPLYRIKHGREQVYTYSDAERDSYLAKLPAGTKA--DIQRYKGLGEMNAEQLWETTL 587

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +   R +L+V +       +   ++   LMG     R +FIQ  AS + D+ 
Sbjct: 588 NPANRIILQVTLED----AQQADETFTMLMGDLVPPRRRFIQTHASEVRDLD 635


>gi|298675298|ref|YP_003727048.1| DNA gyrase subunit B [Methanohalobium evestigatum Z-7303]
 gi|298288286|gb|ADI74252.1| DNA gyrase, B subunit [Methanohalobium evestigatum Z-7303]
          Length = 634

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 248/645 (38%), Positives = 380/645 (58%), Gaps = 21/645 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YD+++I++LEGLE VR RP MYIG  D + LHHL  EV+DN++DE +AGY + I   L+ 
Sbjct: 7   YDSTNIQVLEGLEAVRKRPSMYIGSVDSRGLHHLVYEVVDNSIDEALAGYCSEINTILNS 66

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G +T+ D+GRGIPV+ H K+ NKS LE+++T LHAGGKFD ++Y++SGGLHGVG+SVVN
Sbjct: 67  DGSVTLEDDGRGIPVDTHAKY-NKSALEVVMTLLHAGGKFDKNSYKVSGGLHGVGVSVVN 125

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
            LS+ L V V R +  + Q + +G P + ++   +     GT+ TF+PD +IF     FD
Sbjct: 126 GLSEWLDVEVKRDDKRYYQHYEKGYPKTEVQVLGESEG-NGTKFTFKPDSEIFEST-EFD 183

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L    +  A+L+  +K     ++         +++ F + GG+ ++++   +NRS I
Sbjct: 184 YDSLSTRLRELAFLNKGIKITIKDERSE-----EGQEDVFQYDGGIVSFVKHLNKNRSPI 238

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGI 342
             E    + E  GT    VE ++ + +   E   S+ N I T EGGTH  G + ALTR  
Sbjct: 239 HEEPIYFEGESDGTI---VEISLQYTDSYGEYVYSFANNINTHEGGTHVIGFKTALTRVA 295

Query: 343 KKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
             Y    + ++  + +  +D+      I+S  I +P+F GQTKT+L + D +  VE+ + 
Sbjct: 296 NDYIRKNEIEKGNVRLTGEDIREGLTAIISAKIPDPQFEGQTKTRLGNSDVKGVVESLVT 355

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNI 460
           +    YL +NP  A  +++  +     R   ++ RE   RK+A+    LPGKLADCS+  
Sbjct: 356 EELSRYLEENPKIANSIIKKALSAKRAREAAKRARELTRRKSALEVSTLPGKLADCSETD 415

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +E+F+VEGDSAGGSAK  R+R  QA+LP RGKI+NV  A   K+  N +I+ L+ A+
Sbjct: 416 PSVSEIFLVEGDSAGGSAKMGRDRRFQAILPFRGKIINVEKARLSKVLKNNEILSLITAM 475

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           G      +     RY KVIIMTDADVDGAHI +L+LTFF++ M ++++  ++++  PPL+
Sbjct: 476 GTGIGEDFDINKARYHKVIIMTDADVDGAHIRTLILTFFFRYMNEMVDNGYVYIAQPPLY 535

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           RI +G K  Y H E+ K   L+E  + G   + I R+KGLGEM   QL  T M+   R L
Sbjct: 536 RIKKGKKEFYIHTEKEKNAKLKELGEKG---VSIQRYKGLGEMNPEQLWATTMNPESRKL 592

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +V +           +  + LMG + + R +FI++ A+ + ++ 
Sbjct: 593 TQVTMED----AAAADEMFSILMGEEVEPRRQFIEKHATEVVNLD 633


>gi|254520691|ref|ZP_05132747.1| DNA gyrase subunit B [Clostridium sp. 7_2_43FAA]
 gi|226914440|gb|EEH99641.1| DNA gyrase subunit B [Clostridium sp. 7_2_43FAA]
          Length = 637

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 258/651 (39%), Positives = 385/651 (59%), Gaps = 20/651 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           + ++ +YD S I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AG+   I
Sbjct: 3   EKSNQSYDESQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNSIDEALAGFCTEI 62

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V+++ +  +TV+DNGRG+P   HPK   KST+E+I+T LHAGGKF    Y++SGGLHGV
Sbjct: 63  SVAINEDNSITVIDNGRGMPTGIHPKM-GKSTVEVIMTVLHAGGKFGGGGYKVSGGLHGV 121

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS+   VTV+R+  I+ QK+SRG  ++ L K  K     GT+++F+PD +IF 
Sbjct: 122 GASVVNALSEWCEVTVSREGDIWQQKYSRGNAVTDLSKIGKTEEH-GTKVSFKPDTEIFE 180

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   +D   L    +  A+L+  +K   S  +E        + E +++ GG+K ++    
Sbjct: 181 ET-EYDFDILANRLRELAFLNKGIKIILSDARE------EGKTEVYHYEGGIKEFVSYLS 233

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRV 336
            N+ ++  +    + EK G     VE ++ + +   E    + N I T EGGTH SG + 
Sbjct: 234 RNKEVLHQDPIYIEGEKDGII---VEISLQYNDSYTENLYSFANNIDTIEGGTHLSGFKT 290

Query: 337 ALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  Y +   + +    ++  DD+      ++SV I EP+F GQTKTKL + + + 
Sbjct: 291 ALTRVINDYGKKFNHLKENDKNLSGDDIREGLTAVVSVKISEPQFEGQTKTKLGNSEVRG 350

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454
            V++ + +    +L +NP     +++  +  +  R   RK RE+ RK+ + +  LPGKLA
Sbjct: 351 VVDSIVGEGVSIFLEENPGIGKIIIDKALMAARARDAARKARELTRKSVLERSSLPGKLA 410

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS       E++IVEGDSAGGSAKQ RNR  QA+LPLRGKILNV     ++I     I 
Sbjct: 411 DCSSKDPLECEIYIVEGDSAGGSAKQGRNRRFQAILPLRGKILNVEKQRLDRILTADSIK 470

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            +V A G      + EE LRY ++IIMTDADVDGAHI +LLLTFF++ M  L++  H+++
Sbjct: 471 SMVTAFGAGIGDDFDEEKLRYNRIIIMTDADVDGAHIRTLLLTFFFRYMRGLLDGGHVYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL+++ +  K  YA+ +   +K+L E          I R+KGLGEM A+QL +T MD
Sbjct: 531 AQPPLYQVKKNKKEYYAYSDAELEKLLSEIGGKDNST-NIQRYKGLGEMNANQLWDTTMD 589

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             KR LL+  +   +       +    LMG K + R +FIQ+ A  + ++ 
Sbjct: 590 PEKRVLLKATVEDAI----AADEIFTILMGDKVEPRREFIQKNAKKVSNLD 636


>gi|145218835|ref|YP_001129544.1| DNA gyrase subunit B [Prosthecochloris vibrioformis DSM 265]
 gi|145204999|gb|ABP36042.1| DNA gyrase subunit B [Chlorobium phaeovibrioides DSM 265]
          Length = 642

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 264/648 (40%), Positives = 375/648 (57%), Gaps = 24/648 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY A++I++L+G+  VRMRP MYIG    + LHHL  E++DN++DE + GY + I VSL+
Sbjct: 13  NYGATNIQVLDGIAHVRMRPAMYIGDIHSRGLHHLIYEIVDNSIDETLGGYNDYIFVSLN 72

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G +TV+D+GRGIPV+ HP    KS LE+++T + AGGKFD   Y++SGGLHGVG SVV
Sbjct: 73  PDGSVTVIDHGRGIPVDIHP-DKKKSALELVMTLIGAGGKFDKGAYKVSGGLHGVGASVV 131

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+   V V R    + Q++ RG+P   +++       RGT+ TF PDP+IF     F
Sbjct: 132 NALSEWCEVEVYRDGKAWFQRYHRGVPEGDVKEIGATSE-RGTKTTFMPDPEIFKV-TEF 189

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               ++   +  A+L+  +K                E+E F+F GGLK ++     NR  
Sbjct: 190 RKDIIIDRMRELAFLNSNLKIVVQD--------IEGEQETFHFEGGLKEFVLFTDANRLN 241

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +  E      EK  T    VE A+ + +     + SY N I T EGGTH +G R ALTR 
Sbjct: 242 LIKEPVYIYGEKDSTI---VEIALQYNDSYQENVFSYVNNINTHEGGTHVTGFRKALTRT 298

Query: 342 IKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +  YA+     + +   +  DD       ++SV + EP+F GQTKTKL + + Q  VE+ 
Sbjct: 299 LNSYAQKNDLLKNLKLALTGDDFKEGLTAVISVKVAEPQFEGQTKTKLGNSETQSIVESV 358

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           L +    +   NP     ++E V   +  R   RK +E   RK+ +    LPGKLADCS 
Sbjct: 359 LNEQLSDFAESNPNVIKMIIEKVKGAAMSREAARKAKELTRRKSVLESSGLPGKLADCSI 418

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
           N     EL+IVEGDSAGGSAKQ R+RS QA+LPL+GKILNV  A   K+  N++I  ++ 
Sbjct: 419 NDPEHCELYIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKARLHKLLENEEIKTIIL 478

Query: 519 ALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
           ALG      ++ +E LRY K+IIMTDADVDGAHI +LLLTFF++ M  LIE   +++  P
Sbjct: 479 ALGTNFGEEEFSQEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRHMRSLIEAGKVYIAQP 538

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+ +  G    YA D+E +  I +  +K GK  + I R+KGLGEM   QL  T MD   
Sbjct: 539 PLYLVKAGKDQQYAWDDEERNSIADMMRK-GKANVHIQRYKGLGEMNPEQLWSTTMDPEH 597

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           R+LL+V +   +    +     + LMG K + R +FI++ A ++  + 
Sbjct: 598 RSLLQVSVENAM----EADKVFSTLMGDKVEPRREFIEKNARYVRRLD 641


>gi|256846674|ref|ZP_05552130.1| DNA gyrase, B subunit [Fusobacterium sp. 3_1_36A2]
 gi|294784381|ref|ZP_06749672.1| DNA gyrase, B subunit [Fusobacterium sp. 3_1_27]
 gi|256717894|gb|EEU31451.1| DNA gyrase, B subunit [Fusobacterium sp. 3_1_36A2]
 gi|294487953|gb|EFG35308.1| DNA gyrase, B subunit [Fusobacterium sp. 3_1_27]
          Length = 639

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 255/648 (39%), Positives = 378/648 (58%), Gaps = 20/648 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y+A +I +LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AGY + IEV + 
Sbjct: 6   SYEAQNITVLEGLEAVRKRPGMYIGTTSERGLHHLVWEIVDNSVDEALAGYCDKIEVKIL 65

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  + V+DNGRGIP + HPK+  KS LEI+LT LHAGGKF+N  Y++SGGLHGVG+SVV
Sbjct: 66  PDNIIEVIDNGRGIPTDIHPKY-GKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGVSVV 124

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKAG 221
           NALS+ L V V +  TI  QK+ RG P   ++        + GT + F+ D +IF     
Sbjct: 125 NALSEWLEVEVRKNGTIHYQKYHRGKPEEDVKVIGTCDESEHGTIVRFKADGEIFETLI- 183

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L    +  AYL+  +    S  ++  +K      E + F GG+  +L   +++ +
Sbjct: 184 YNYFTLSNRLKELAYLNKGLTITLSDLRKDEKKE-----ETYKFDGGILDFLNEIVKDDT 238

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTR 340
            I  + F   +E+       V+    +   +N  I S+ N I T EGGTH  G R ALT+
Sbjct: 239 TIIEKPFYVSSEQDNV---GVDVTFTYTTSQNEVIYSFVNNINTHEGGTHVQGFRTALTK 295

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I    +       +   ++ +D+    VGI+S  I +P+F GQTK KL + +    V  
Sbjct: 296 VINDVGKAQGLLKDKDGKLMGNDIREGVVGIVSTKIPQPQFEGQTKGKLGNSEVSGIVNT 355

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCS 457
            + +    +L  NP     ++E ++   + R   +K RE+  + + +    LPGKLADC+
Sbjct: 356 IVSNSLKIFLEDNPNITKIIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCT 415

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
              A   E+FIVEGDSAGGSAKQ R+R NQA+LPLRGKI+NV  AG  K   + +I  +V
Sbjct: 416 SKKAEECEIFIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMV 475

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A G      +    LRY K+I+MTDADVDGAHI +L+LTF Y+ M DLI   ++++  P
Sbjct: 476 TAFGTSIGETFDISKLRYGKIILMTDADVDGAHIRTLILTFLYRYMIDLIYAGNVYIACP 535

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+++  G + VYA+++   + +L +  +  K K  I R+KGLGEM   QL ET M+ + 
Sbjct: 536 PLYKVASGKQIVYAYNDLELKNVLGQMNQDNK-KYTIQRYKGLGEMNPEQLWETTMNPDG 594

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           R LL+V I+    + ++     +KLMG K + R +FI+E A ++ ++ 
Sbjct: 595 RLLLKVSID----NAREADMLFDKLMGDKVEPRREFIEEHAEYVKNID 638


>gi|116871428|ref|YP_848209.1| DNA gyrase subunit B [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116740306|emb|CAK19424.1| DNA gyrase subunit B [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 646

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 243/651 (37%), Positives = 373/651 (57%), Gaps = 20/651 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
            ++ +Y+   I++LEGLE VR RPGMYIG T ++ LHHL  E++DNA+DE +AG+   IE
Sbjct: 11  ESASDYNEDQIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVWEIVDNAIDEALAGFCTEIE 70

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           ++++ +  +TV DNGRGIP   + K   + T+E+I T LHAGGKF    Y++SGGLHGVG
Sbjct: 71  ITIEADNSITVRDNGRGIPTGINEKI-GRPTVEVIFTVLHAGGKFGGGGYKVSGGLHGVG 129

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS  L V V R+   + Q+F RG  +  +E + +  + RGT + F PDP+IF +
Sbjct: 130 ASVVNALSTSLEVYVHREGQKYYQRFERGDVVMDMEVQGET-DYRGTIVHFTPDPQIFTE 188

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              FD   L   T+  A+L+  +       +E  +      +++F++ GG+++Y++   +
Sbjct: 189 TTEFDFDTLRTRTRELAFLNRGLTISIEDKREEHK-----VRKDFHYEGGIRSYVEHLNK 243

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVA 337
            + +I       + E+       VE ++ +          + N I T EGGTHESG + A
Sbjct: 244 AKDVIHEPPIYLEGERDDIM---VEISMQYNTGFSSNIISFANNIHTYEGGTHESGFKTA 300

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR I  YA   +       ++  +D+      I+S+   +P+F GQTKTKL + +A+  
Sbjct: 301 LTRVINDYARRNKVFKDSDDNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARSI 360

Query: 396 VENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454
            +    +  + ++++NP  A K++E  V+        +R +    + + +    LPGKLA
Sbjct: 361 TDKLFSEALNKFMMENPDVAKKIVEKGVVASRARLAAKRAREVARKSSGLEISSLPGKLA 420

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I  N++I 
Sbjct: 421 DCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEEIR 480

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            +  A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ M  L++  ++++
Sbjct: 481 TIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGYIYI 540

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL++I  G +  Y + +   +  L    K    K  I R+KGLGEM   QL +T M+
Sbjct: 541 AQPPLYQIKHGKQIEYVYSDGQLEDYLASLDKD--TKYSIQRYKGLGEMNPEQLWDTTMN 598

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              RTLL+V I   +    D  ++   LMG + + R KFI+E A ++ ++ 
Sbjct: 599 PEHRTLLQVNIKDAI----DADETFEMLMGDRVEPRRKFIEENAQYVKNLD 645


>gi|237716665|ref|ZP_04547146.1| subunit B [Bacteroides sp. D1]
 gi|237720397|ref|ZP_04550878.1| DNA gyrase subunit B [Bacteroides sp. 2_2_4]
 gi|262405441|ref|ZP_06081991.1| DNA gyrase, B subunit [Bacteroides sp. 2_1_22]
 gi|294646223|ref|ZP_06723877.1| DNA gyrase, B subunit [Bacteroides ovatus SD CC 2a]
 gi|298480563|ref|ZP_06998760.1| DNA gyrase, B subunit [Bacteroides sp. D22]
 gi|229442648|gb|EEO48439.1| subunit B [Bacteroides sp. D1]
 gi|229450148|gb|EEO55939.1| DNA gyrase subunit B [Bacteroides sp. 2_2_4]
 gi|262356316|gb|EEZ05406.1| DNA gyrase, B subunit [Bacteroides sp. 2_1_22]
 gi|292638441|gb|EFF56805.1| DNA gyrase, B subunit [Bacteroides ovatus SD CC 2a]
 gi|295086258|emb|CBK67781.1| DNA gyrase subunit B [Bacteroides xylanisolvens XB1A]
 gi|298273384|gb|EFI14948.1| DNA gyrase, B subunit [Bacteroides sp. D22]
          Length = 652

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 259/653 (39%), Positives = 381/653 (58%), Gaps = 21/653 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y A SI++LEGLE VR RP MYIG    K LHHL  E++DN++DE +AGY + IEV+++
Sbjct: 12  SYSADSIQVLEGLEAVRKRPAMYIGDISVKGLHHLVYEIVDNSIDEALAGYCDHIEVTIN 71

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV DNGRGIPV+ H K   KS LE+ +T LHAGGKFD  +Y++SGGLHGVG+S V
Sbjct: 72  EDNSITVQDNGRGIPVDYHEK-EKKSALEVAMTVLHAGGKFDKGSYKVSGGLHGVGMSCV 130

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  +   V R   I+ Q++  G PL  +++     +  GTR  F PD  IF +   +
Sbjct: 131 NALSTHMTTQVFRNGKIYQQEYEIGKPLYSVKEVG-TADITGTRQQFWPDGTIFTETV-Y 188

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L    +  AYL+  ++   +  + +  + G  + E+FY   GL+ +++    +R  
Sbjct: 189 DYKILASRLRELAYLNAGLRISLTD-RRVVNEDGSFKSEQFYSEEGLREFVRFIESSREH 247

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           + +++    +EK+G     +E AI +     E   SY N I T EGGTH +G R ALTR 
Sbjct: 248 LINDVIYLNSEKQGIP---IEVAIMYNTGFSENVHSYVNNINTIEGGTHLAGFRRALTRT 304

Query: 342 IKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +KKYAE ++   K  + I  DD       ++SV + EP+F GQTKTKL + +    V+ A
Sbjct: 305 LKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVMGAVDQA 364

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458
           + +   +YL ++P EA  +++ VI  +  R   RK RE+ ++ + +    LPGKLADCS 
Sbjct: 365 VGEVLAYYLEEHPKEAKTIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGKLADCSD 424

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 ELF+VEGDSAGG+AKQ RNR  QA+LPLRGKILNV  A   K   + +I ++  
Sbjct: 425 KDPSKCELFLVEGDSAGGTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESDEIRNIYT 484

Query: 519 ALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
           ALG    +         + LRY K+IIMTDADVDG+HI +L++TFF++ M  +I+  +L+
Sbjct: 485 ALGVTIGTDEDSKEANIQKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQVIQNGYLY 544

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           + +PPL+   +G    Y   +  +QK ++ +    +  I   R+KGLGEM A QL ET M
Sbjct: 545 IATPPLYLCKKGKVEEYCWTDAQRQKFIDTYGGGSENAIHTQRYKGLGEMNAQQLWETTM 604

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           D   R L +V I+    +  +     + LMG     R +FI+E A++  ++  
Sbjct: 605 DPENRMLKQVNID----NAAEADYIFSMLMGEDVGPRREFIEENATYA-NIDA 652


>gi|190710597|gb|ACE95129.1| gyrase subunit B [Bacillus thuringiensis serovar morrisoni]
          Length = 627

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 264/644 (40%), Positives = 379/644 (58%), Gaps = 21/644 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R   I  QK+ RGIP++ L+      +K GT   F+PDP+IF +  
Sbjct: 120 VVNALSTELEVFVHRDGKIQYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E    +  K G     VE A+ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF++ QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            R+LL+V +   +    +  ++   LMG K + R  FIQE A +
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKY 627


>gi|190710595|gb|ACE95128.1| gyrase subunit B [Bacillus thuringiensis serovar pondicheriensis]
          Length = 627

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 264/644 (40%), Positives = 381/644 (59%), Gaps = 21/644 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            ++YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R+  I  QK+ RGIP++ L+      ++ GT   F+PDP+IF +  
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E    +  K G     VE ++ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K++E   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF++ QG K  YA++E+  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            R+LL+V +   +    +  ++   LMG K + R  FIQE A +
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKY 627


>gi|13471034|ref|NP_102603.1| DNA topoisomerase IV subunit B [Mesorhizobium loti MAFF303099]
 gi|14021778|dbj|BAB48389.1| DNA topoisomerase [Mesorhizobium loti MAFF303099]
          Length = 685

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 417/684 (60%), Positives = 526/684 (76%), Gaps = 10/684 (1%)

Query: 3   DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAF---ANQSASDNYDASSIRILEGLEPVR 59
           DD+ DLF  +  Q Q      + +  +  + A    A +  S+ Y A+ I +LEGLEPVR
Sbjct: 2   DDNNDLFGNMDKQPQPVRTPARPADPLVQAAAKRPAATKDGSEGYSAADIEVLEGLEPVR 61

Query: 60  MRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119
            RPGMYIGGTD+KA+HHLF+EVIDN+MDE +AG+A  I+V L  +GFLTV DNGRGIPV+
Sbjct: 62  RRPGMYIGGTDDKAMHHLFAEVIDNSMDEAVAGHATFIDVELSADGFLTVTDNGRGIPVD 121

Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179
            HPKF  K  LE+I+TTLH+GGKFD+  YE SGGLHGVG+SVVNALSD L V VAR   +
Sbjct: 122 PHPKF-KKPALEVIMTTLHSGGKFDSKVYETSGGLHGVGVSVVNALSDHLEVEVARGRQL 180

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
           + Q+FSRGIP+S LE+  +V N+RGT+I F PD +IFG  A F+ ARL +MT+SKAYL G
Sbjct: 181 YRQRFSRGIPVSGLEQLGEVHNRRGTKIRFHPDEQIFGKGAAFEPARLYRMTRSKAYLFG 240

Query: 240 RVKTCWSCDKE-IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH 298
            V+  W+CD   I EK   P K EF+FPGGLK YL+  L +   ++ EIF GK+EK+G H
Sbjct: 241 GVEIRWTCDPSLIKEKDQTPAKAEFHFPGGLKDYLKASLGDDFQVTREIFAGKSEKQGGH 300

Query: 299 RGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII 358
            G++EWA+ W   +  I SYCNTI T EGGTHE+G R  LTRG++ YA+L  NKRA  + 
Sbjct: 301 -GSLEWAVTWFGGDGFINSYCNTIPTGEGGTHEAGFRNVLTRGLRAYADLVGNKRASIVT 359

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
           S+D+MISA G+LSVFIREPEF GQTK +L +++A R VE A+RDPFDH+L  NP EA+KL
Sbjct: 360 SEDVMISAAGMLSVFIREPEFVGQTKDRLATIEAIRIVETAIRDPFDHWLADNPQEASKL 419

Query: 419 LEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
           LEWVI R++ER+RRR+++EV+RK+A+RKLRLPGKLADC+QN A G ELFIVEGDSAGGSA
Sbjct: 420 LEWVIARADERVRRRQEKEVSRKSAVRKLRLPGKLADCTQNAAAGAELFIVEGDSAGGSA 479

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538
           KQAR+R++QAVLPLRGKILNVASAG++K+  NQQI DL+QALGC TRS+YR+EDLRY++V
Sbjct: 480 KQARDRASQAVLPLRGKILNVASAGNDKLAANQQISDLIQALGCGTRSKYRDEDLRYDRV 539

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQ 598
           IIMTDADVDGAHIASLL+TFFYQEM  L+   HL+L  PPL+ I QG K  YA D+ HK 
Sbjct: 540 IIMTDADVDGAHIASLLITFFYQEMPALVRGGHLYLAVPPLYSIRQGGKVAYARDDAHKD 599

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           ++L   +  G+GK+E+ RFKGLGEM+ASQLKET MD  KRTLLRV++N+  ++   T+D 
Sbjct: 600 ELL-RTEFTGRGKVELGRFKGLGEMMASQLKETTMDPRKRTLLRVDVNEIDSA---TKDR 655

Query: 659 INKLMGTKADERFKFIQERASFID 682
           +++LMGTK + RF+FIQERA F +
Sbjct: 656 VDELMGTKPEARFRFIQERAEFAE 679


>gi|302380141|ref|ZP_07268614.1| DNA gyrase, B subunit [Finegoldia magna ACS-171-V-Col3]
 gi|302312083|gb|EFK94091.1| DNA gyrase, B subunit [Finegoldia magna ACS-171-V-Col3]
          Length = 638

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 255/653 (39%), Positives = 385/653 (58%), Gaps = 21/653 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
             +  Y A  I +LEGLEPVR+RPGMYIG TDEK LHHL  EV+DN++DE +AG  +LI+
Sbjct: 2   KKNREYTADQITVLEGLEPVRVRPGMYIGSTDEKGLHHLVYEVVDNSIDEALAGVCDLIK 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +  + V D+G GIPVE HPK   KSTLE +LT LHAGGKF N  Y+ SGGLHGVG
Sbjct: 62  VTIKKDNSIIVEDDGSGIPVETHPK-TGKSTLETVLTVLHAGGKFSNDAYQYSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +S VNALS  L   V R   ++ Q+F +G  ++ L   ++     GT I F PD  IF  
Sbjct: 121 VSCVNALSTYLIARVKRDGKMYEQRFEKGKTVTGLTVVKENVRGTGTTIEFMPDDTIFET 180

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              FD   L K  +  A+L+  VK  ++ +++         KE F++ GG+K++++   +
Sbjct: 181 LN-FDRNVLAKRFREMAFLNKGVKIEFADERD-------GYKELFHYEGGIKSFVEYINK 232

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           ++  +  E+   + EK  T    VE A+ + E     I S+ N I T +GGTH  G + A
Sbjct: 233 SKKPLDHEVMYIEGEKDTT---KVEIAMQYTESYNETIVSFTNNIKTVDGGTHVVGFKSA 289

Query: 338 LTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  YA       ++  ++  DD+      ++SV +  P+F GQTK KL + +A+  
Sbjct: 290 LTRALNDYARNKSILKEKDDNLSGDDVREGITAVVSVKLNNPQFEGQTKGKLGNSEARTV 349

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454
           V++ + +    Y  +NP     +++  +   + RL  R+ R+ V +K+ +    LPGKLA
Sbjct: 350 VDSVVYEHLSFYFEENPKIVRTIIQKALASQKARLAARRARDLVRKKSVLDNTTLPGKLA 409

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC  +     E+F+VEGDSAGGSAK  R+   QA+LPLRGKILNV  A  E++ N+++I 
Sbjct: 410 DCQSSDIEYNEIFLVEGDSAGGSAKGGRDNKFQAILPLRGKILNVEKAHLERVLNSEEIK 469

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++ A G      +    LRY K++IMTDADVDGAHI +LLLTF Y+ M  L+E+ H+++
Sbjct: 470 AMITAFGTGIGKNFDISKLRYGKIVIMTDADVDGAHIRTLLLTFLYRFMKPLVEKGHVYI 529

Query: 575 ISPPLFRITQGTKS-VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
             PPL+ I +G K   Y + E+  ++ LE++ +  +  I++ R+KGLGEM A QL +T M
Sbjct: 530 AQPPLYGIIKGVKVMEYCYTEQELEEALEKYGE--RSNIKVQRYKGLGEMNAEQLWDTTM 587

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           +   R L++VEI+       +  ++ + LMG   + R +FI++ A +  ++  
Sbjct: 588 NPEHRILIKVEIDG--EDENELDNTFDVLMGDNVEPRREFIEQNAVYAQNIDA 638


>gi|260588813|ref|ZP_05854726.1| DNA gyrase, B subunit [Blautia hansenii DSM 20583]
 gi|260540592|gb|EEX21161.1| DNA gyrase, B subunit [Blautia hansenii DSM 20583]
          Length = 641

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 265/654 (40%), Positives = 378/654 (57%), Gaps = 20/654 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           +      Y A  I+ILEGLE VR RPGMYIG T  + LHHL  E++DNA+DE +AGY + 
Sbjct: 2   STEIKTEYGADQIQILEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNAVDEALAGYCDT 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+VS++ +  +TV+DNGRGIPV  + K      +E++ T LHAGGKF    Y++SGGLHG
Sbjct: 62  IDVSINEDNSITVIDNGRGIPVGINQKA-GIPAVEVVFTILHAGGKFGGGGYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKI 215
           VG SVVNALS  L VT+  +  I+ Q++ RG  +  L+   +    K GT +TF PDP+I
Sbjct: 121 VGASVVNALSTWLEVTIFHEGKIYRQRYERGKTVYSLKIVGECEPEKTGTMVTFLPDPEI 180

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   FD   L    +  A+L+  ++      +E  EK        F++ GG+K ++Q 
Sbjct: 181 FEETI-FDFGTLKHRFREIAFLTKGLRIIARDKREEEEKEVT-----FHYEGGIKEFVQY 234

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             ++ + +  EI   +  K G     VE A+   +        + N I T EGGTH  G 
Sbjct: 235 LNKSNTALYEEILYFEGNKDGVM---VEVAMQHNDAYTENTYGFVNNITTPEGGTHIVGF 291

Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALT+   +YA   +  +    ++  +D+      I+SV I +P+F GQTK KL + +A
Sbjct: 292 RNALTKTFNEYARKNKLLKESEQNLTGEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEA 351

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           +  V+  + +  + YL QNP  A  ++E  ++ +      R+ +    RK+A+    LPG
Sbjct: 352 RGAVDGIVSNQLEIYLEQNPAVAKIIIEKSLLSQRARDAARKARELTRRKSALDGTSLPG 411

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC        E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV  A  +KI  N 
Sbjct: 412 KLADCVDKDPSKCEIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARLDKIYANA 471

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++ A G      +    LRY K+IIMTDADVDGAHIA+LLLTF Y+ M +LI+Q +
Sbjct: 472 EIKAMITAFGTGIHEDFDISKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGY 531

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           ++L  PPLF+I +  K  YA+ E+ +  IL E    G     I R+KGLGEM A QL ET
Sbjct: 532 VYLAKPPLFKIEKNKKIHYAYTEQEQADILAEIGMDG---CNIQRYKGLGEMDADQLWET 588

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   R L+RV +++D  S  +   +   LMG K + R +FI+E A +  ++ 
Sbjct: 589 TMDPESRILMRVVMDED--STSELDLTFTTLMGDKVEPRREFIEENAKYAKNLD 640


>gi|190710553|gb|ACE95107.1| gyrase subunit B [Bacillus thuringiensis serovar kyushuensis]
          Length = 627

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 264/644 (40%), Positives = 379/644 (58%), Gaps = 21/644 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R   I  QK+ RGIP++ L+      +K GT   F+PDP+IF +  
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E    +  K G     VE A+ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF++ QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            R+LL+V +   +    +  ++   LMG K + R  FIQE A +
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKY 627


>gi|257462460|ref|ZP_05626872.1| DNA gyrase subunit B [Fusobacterium sp. D12]
 gi|317060117|ref|ZP_07924602.1| DNA gyrase subunit B [Fusobacterium sp. D12]
 gi|313685793|gb|EFS22628.1| DNA gyrase subunit B [Fusobacterium sp. D12]
          Length = 638

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 256/651 (39%), Positives = 377/651 (57%), Gaps = 22/651 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY A +I +LEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AGY N I VS+
Sbjct: 2   NNYGAQNITVLEGLEAVRKRPGMYIGTTSARGLHHLVWEVVDNSVDEALAGYCNRITVSI 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  + V DNGRGIPV+ HPK+  KS LEI+LT LHAGGKF+N  Y++SGGLHGVGISV
Sbjct: 62  LPDNIIQVEDNGRGIPVDIHPKY-GKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGISV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDPKIFGDK 219
           VNALS+   V V R+  ++ QK+ RG P+  ++     +     GT +TF+PD +IF   
Sbjct: 121 VNALSEWTEVKVKREGNVYYQKYLRGKPIEDVKIISALEAGETTGTIVTFKPDIEIFETV 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L    +  AYL+  ++      +       I +KE F F GG+  +L+   + 
Sbjct: 181 I-FEYEVLQHRLKELAYLNRGLEINLLDCR-----NEIGKKESFQFEGGISDFLKEVTQE 234

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVAL 338
              + S+    + + +   +  V+ A  +   ++  I S+ N I T EGG+H +G R  L
Sbjct: 235 NQTLLSKQIHIEGQAE---QVGVDIAFTYTTGQSEIIYSFVNNINTTEGGSHVTGFRTCL 291

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           T+ I    +      ++   +   D+    V I+SV + +P+F GQTKTKL + +    V
Sbjct: 292 TKVINDIGKSQGFLKEKDGKLQGGDIREGIVAIISVKVPQPQFEGQTKTKLGNSEVSGIV 351

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLAD 455
              L      +L  NP +   ++E ++   + R   ++ RE   + + +    LPGKLAD
Sbjct: 352 NTVLSTDLKIFLEDNPNDTKLIIEKILNSKKAREAAQRAREAVLRKSVLEVGSLPGKLAD 411

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS       E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  AG  K   + +I  
Sbjct: 412 CSSKKPEECEIFLVEGDSAGGSAKQGRDRYFQAILPLKGKILNVEKAGLHKALESDEIRA 471

Query: 516 LVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           +V A G     +  + E LRY K+I+MTDADVDGAHI +L+LTF Y+ M DLI   ++++
Sbjct: 472 MVTAFGTNIGEESFDLEKLRYGKIILMTDADVDGAHIRTLILTFLYRYMVDLIHNGNVYI 531

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL++++ G    YA+ +   +++L+  +   K K  + R+KGLGEM   QL ET MD
Sbjct: 532 AQPPLYKVSFGKSIRYAYTDSQLKEMLQGMEGENK-KYTLQRYKGLGEMNPEQLWETTMD 590

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              R LL+V I+    + ++     +KLMG K + R +FIQE A ++ ++ 
Sbjct: 591 PEARLLLKVSID----NAREADMLFDKLMGDKVEPRREFIQEHAEYVKNID 637


>gi|260172424|ref|ZP_05758836.1| DNA gyrase subunit B [Bacteroides sp. D2]
 gi|315920720|ref|ZP_07916960.1| hypothetical protein BSGG_2130 [Bacteroides sp. D2]
 gi|313694595|gb|EFS31430.1| hypothetical protein BSGG_2130 [Bacteroides sp. D2]
          Length = 652

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 260/653 (39%), Positives = 383/653 (58%), Gaps = 21/653 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y A SI++LEGLE VR RP MYIG    K LHHL  E++DN++DE +AGY + IEV+++
Sbjct: 12  SYSADSIQVLEGLEAVRKRPAMYIGDISVKGLHHLVYEIVDNSIDEALAGYCDHIEVTIN 71

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV DNGRGIPV+ H K   KS LE+ +T LHAGGKFD  +Y++SGGLHGVG+S V
Sbjct: 72  EDNSITVQDNGRGIPVDYHEK-EKKSALEVAMTVLHAGGKFDKGSYKVSGGLHGVGMSCV 130

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  +   V R   I+ Q++  G PL  +++     +  GTR  F PD  IF +   +
Sbjct: 131 NALSTHMTTQVFRDGKIYQQEYEIGKPLYSVKEVG-TADITGTRQQFWPDNTIFTETV-Y 188

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L    +  AYL+  ++   +  + +  + G  + E+FY   GL+ +++    +R  
Sbjct: 189 DYKILASRLRELAYLNAGLRITLTD-RRVVNEDGSFKGEQFYSEEGLREFVRFIESSREH 247

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           + +++    +EK+G     +E AI +     E   SY N I T EGGTH +G R ALTR 
Sbjct: 248 LINDVIYLNSEKQGIP---IEVAIMYNTGFSENVHSYVNNINTIEGGTHLAGFRRALTRT 304

Query: 342 IKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +KKYAE ++   K  + I  DD       ++SV + EP+F GQTKTKL + +    V+ A
Sbjct: 305 LKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVMGAVDQA 364

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458
           + +   +YL ++P EA  +++ VI  +  R   RK RE+ ++ + +    LPGKLADCS 
Sbjct: 365 VGEVLAYYLEEHPKEAKTIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGKLADCSD 424

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
             A   ELF+VEGDSAGG+AKQ RNR  QA+LPLRGKILNV  A   K   + +I ++  
Sbjct: 425 KDATKCELFLVEGDSAGGTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESDEIRNIYT 484

Query: 519 ALGCRT-----RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
           ALG          +   + LRY K+IIMTDADVDG+HI +L++TFF++ M  +I+  +L+
Sbjct: 485 ALGVTIGTEEDSKEANIQKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQIIQNGYLY 544

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           + +PPL+   +G    Y   +  +QK ++ +    +  +   R+KGLGEM A QL ET M
Sbjct: 545 IATPPLYLCKKGKVEEYCWTDAQRQKFIDTYGGGSENAVHTQRYKGLGEMNAQQLWETTM 604

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           D   R L +V I+    +  +     + LMG     R +FI+E A++  ++ T
Sbjct: 605 DPENRMLKQVNID----NAAEADYIFSMLMGEDVGPRREFIEENATYA-NIDT 652


>gi|153809174|ref|ZP_01961842.1| hypothetical protein BACCAC_03484 [Bacteroides caccae ATCC 43185]
 gi|149128150|gb|EDM19370.1| hypothetical protein BACCAC_03484 [Bacteroides caccae ATCC 43185]
          Length = 652

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 261/653 (39%), Positives = 383/653 (58%), Gaps = 21/653 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y A SI++LEGLE VR RP MYIG    K LHHL  E++DN++DE +AGY + IEV+++
Sbjct: 12  SYSADSIQVLEGLEAVRKRPAMYIGDISIKGLHHLVYEIVDNSIDEALAGYCDHIEVTIN 71

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV DNGRGIPV+ H K   KS LE+ +T LHAGGKFD  +Y++SGGLHGVG+S V
Sbjct: 72  EDNSITVQDNGRGIPVDYHEK-EKKSALEVAMTVLHAGGKFDKGSYKVSGGLHGVGMSCV 130

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  +   V R   I+ Q++  G PL  +++     +  GTR  F PD  IF +   +
Sbjct: 131 NALSTHMTTQVFRNGKIYQQEYEIGKPLYSVKEVG-TADITGTRQQFWPDDTIFTETV-Y 188

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L    +  AYL+  ++   +  + +  + G  + E+FY   GL+ +++    +R  
Sbjct: 189 DYKILASRLRELAYLNAGLRITLTD-RRVVNEDGSFKSEQFYSEEGLREFVRFIESSREH 247

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           + +++    +EK+G     +E AI +     E   SY N I T EGGTH +G R ALTR 
Sbjct: 248 LINDVIYLNSEKQGIP---IEVAIMYNTGFSENVHSYVNNINTIEGGTHLAGFRRALTRT 304

Query: 342 IKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +KKYAE ++   K  + I  DD       ++SV + EP+F GQTKTKL + +    V+ A
Sbjct: 305 LKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVMGAVDQA 364

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458
           + +   +YL ++P EA  +++ VI  +  R   RK RE+ ++ + +    LPGKLADCS 
Sbjct: 365 VGEVLSYYLEEHPKEAKTIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGKLADCSD 424

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 ELF+VEGDSAGG+AKQ RNR  QA+LPLRGKILNV  A   K   + +I ++  
Sbjct: 425 KDPSKCELFLVEGDSAGGTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESDEIRNIYT 484

Query: 519 ALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
           ALG    ++        E LRY K+IIMTDADVDG+HI +L++TFF++ M  +I+  +L+
Sbjct: 485 ALGVTIGTEDDSKEANIEKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQIIQNGYLY 544

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           + +PPL+   +G    Y   +  +QK ++ +    +  I   R+KGLGEM A QL ET M
Sbjct: 545 IATPPLYLCKKGKVEEYCWTDAQRQKFIDTYGGGSENAIHTQRYKGLGEMNAQQLWETTM 604

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           D   R L +V I+    +  +     + LMG     R +FI+E A++  ++ T
Sbjct: 605 DPENRMLKQVNID----NAAEADYIFSMLMGEDVGPRREFIEENATYA-NIDT 652


>gi|254504091|ref|ZP_05116242.1| DNA topoisomerase IV, B subunit [Labrenzia alexandrii DFL-11]
 gi|222440162|gb|EEE46841.1| DNA topoisomerase IV, B subunit [Labrenzia alexandrii DFL-11]
          Length = 691

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 400/695 (57%), Positives = 511/695 (73%), Gaps = 15/695 (2%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSG--------EIPDSPAFANQSAS-DNYDASSIRI 51
           M+    DLF+     S     +   +         ++ ++   +  +A   +Y A+ I +
Sbjct: 1   MS-GKDDLFAGNAAVSNPVGSEPAPAPKPAPTPVADLSEARKKSQAAAEYSDYSAADIEV 59

Query: 52  LEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVD 111
           LEGLEPVR RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+A  I+VSL  +G+L + D
Sbjct: 60  LEGLEPVRRRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHATWIDVSLGADGYLNITD 119

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171
           NGRGIPV+ HPKF +KS LE+I+TTLHAGGKFD+  YE SGGLHGVG+SVVNALSDEL V
Sbjct: 120 NGRGIPVDPHPKFKDKSALEVIMTTLHAGGKFDSKVYETSGGLHGVGVSVVNALSDELVV 179

Query: 172 TVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMT 231
            VAR   ++ Q F RG P  PLE     +N+RGT + F+PD  IFG  A F  ARLLKM 
Sbjct: 180 EVARSRKLYRQIFRRGHPQGPLEHIGDTQNRRGTMVRFKPDEMIFGKGAKFQPARLLKMA 239

Query: 232 QSKAYLSGRVKTCWSCDKE-IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
           +SKAYL G V+  W C  E ++EK   P +  F+FPGGL+ +L+ +L     +  E+F+G
Sbjct: 240 RSKAYLFGGVEIRWHCAPELLSEKDETPAEAVFHFPGGLRDFLKERLGKERPVVDEVFSG 299

Query: 291 KTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
           +T+K G H G VEWA++W   +  I SYCNT+ T EGGTHE+G R AL RG+K Y EL  
Sbjct: 300 RTDKTGKH-GAVEWAVSWFAGDGFINSYCNTVPTPEGGTHEAGFRYALLRGLKAYGELVN 358

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
           NK+A  I  DD+M SA G+LSVFIREPEF GQTK KL + +A R  E A+RD FDH+L  
Sbjct: 359 NKKASIITGDDVMTSAGGMLSVFIREPEFVGQTKDKLATNEATRVAETAVRDAFDHWLTA 418

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           +P +A KLLEWVI+R+EERLRRR++++V RKTA+RKLRLPGKLADCS + + GTELFIVE
Sbjct: 419 SPNQANKLLEWVIDRAEERLRRRQEKDVARKTAVRKLRLPGKLADCSTSQSEGTELFIVE 478

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530
           GDSAGGSAKQARNRSNQA+LPLRGKILNVA+AG +K+  NQQ+ DL+QALGC TRS Y E
Sbjct: 479 GDSAGGSAKQARNRSNQAILPLRGKILNVANAGRDKLVANQQLADLIQALGCGTRSSYAE 538

Query: 531 EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVY 590
           +DLRYE+++IMTDADVDGAHIASLL+TFFY+EM +LI   HL+L  PPL+R++QG K++Y
Sbjct: 539 KDLRYERIVIMTDADVDGAHIASLLITFFYREMPELIRGGHLYLAVPPLYRLSQGGKTLY 598

Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
           A D+ HK ++L    K GK K+EI RFKGLGEML +QLKET MD +KR+LL+V +++   
Sbjct: 599 ARDDMHKDELLATVFK-GKSKVEIGRFKGLGEMLPAQLKETTMDPSKRSLLKVRVDE--L 655

Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           ++ DT D++ +LMG K + RF+FIQ+ A F DD+ 
Sbjct: 656 AIADTNDTVERLMGNKPEARFRFIQDNAEFADDLD 690


>gi|239637290|ref|ZP_04678277.1| DNA gyrase, B subunit [Staphylococcus warneri L37603]
 gi|239597127|gb|EEQ79637.1| DNA gyrase, B subunit [Staphylococcus warneri L37603]
          Length = 640

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 253/655 (38%), Positives = 385/655 (58%), Gaps = 20/655 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            ++ + +DNY A  I++LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AGYA
Sbjct: 1   MSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYA 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I V+++ + ++ V DNGRGIPV+   K   +  +E+ILT LHAGGKF    Y++SGGL
Sbjct: 61  DEINVTIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS++L V V R +TI+ Q + +G+P   L++     +K GT I F+ D  
Sbjct: 120 HGVGSSVVNALSEDLEVYVHRNDTIYHQAYKKGVPQFDLKEIGST-DKTGTAIRFKADSS 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   ++   L +  +  A+L+  ++   + +++  +      ++ +++ GG+K+Y++
Sbjct: 179 IFTETTVYNYETLQQRIRELAFLNKGIQITLTDERDEDDI----RQDSYHYEGGIKSYVE 234

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESG 333
              EN+  I  E       K       VE AI + +       +Y N I T EGGTHE G
Sbjct: 235 MLNENKEPIHGEPIYIHQSKDDI---EVEIAIQYNKGYSTNLLTYANNIHTYEGGTHEDG 291

Query: 334 LRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            + ALTR +  Y   ++  +        +D       I+S+   +P+F GQTKTKL + +
Sbjct: 292 FKRALTRVLNSYGMNSKIIKEDKDRLSGEDTREGLTAIISIKHGDPQFEGQTKTKLGNSE 351

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            ++ V+    + F+ +L +NP     ++E  I  S  R+  +K RE   RK+A+    LP
Sbjct: 352 VRQVVDKLFSEHFERFLYENPSVGRIIVEKGIMASRARVAAKKAREVTRRKSALEISSLP 411

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS      +E+F+VEGDSAGGS K  R+ S QA+LPLRGKILNV  A  ++I NN
Sbjct: 412 GKLADCSSKNPEESEIFLVEGDSAGGSTKSGRDSSTQAILPLRGKILNVEKARLDRILNN 471

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
            +I  ++ A G     ++     RY K++IMTDADVDGAHI +LLLTFFY+ M  LIE  
Sbjct: 472 NEIRSMITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAG 531

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPL+++TQG +  Y  ++    K+  E   +   K  I+R+KGLGEM A QL E
Sbjct: 532 YVYIAQPPLYKLTQGKQKYYVFNDRELDKLKAEL--NPTPKWSIARYKGLGEMNADQLWE 589

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T M+   R++L+V +   +    D   +   LMG   + R +FI++ A +  ++ 
Sbjct: 590 TTMNPEHRSMLQVTLEDAI----DADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 639


>gi|190710609|gb|ACE95135.1| gyrase subunit B [Bacillus thuringiensis serovar morrisoni]
          Length = 627

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 263/644 (40%), Positives = 378/644 (58%), Gaps = 21/644 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R   I  QK+ RGIP++ L+      +K GT   F+PDP+IF +  
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E    +  K G     VE A+ + E       S+ N   T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNTHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF++ QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            R+LL+V +   +    +  ++   LMG K + R  FIQE A +
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKY 627


>gi|190710551|gb|ACE95106.1| gyrase subunit B [Bacillus thuringiensis serovar sotto]
 gi|190710565|gb|ACE95113.1| gyrase subunit B [Bacillus thuringiensis serovar sumiyoshiensis]
 gi|190710591|gb|ACE95126.1| gyrase subunit B [Bacillus thuringiensis serovar sotto]
          Length = 627

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 264/644 (40%), Positives = 379/644 (58%), Gaps = 21/644 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R   I  QK+ RGIP++ L+      +K GT   F+PDP+IF +  
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E    +  K G     VE A+ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF++ QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            R+LL+V +   +    +  ++   LMG K + R  FIQE A +
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKY 627


>gi|304439074|ref|ZP_07398993.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304372433|gb|EFM26020.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 637

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 262/649 (40%), Positives = 388/649 (59%), Gaps = 24/649 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y A  I++L GLEPVR+RPGMYIG T  K LHHL  EV+DN++DE + G  + IEV++  
Sbjct: 7   YGAGDIQVLTGLEPVRLRPGMYIGSTGPKGLHHLIYEVVDNSIDEALQGMCDTIEVTILK 66

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G ++V DNG GIPVE HP+   KST+E +LT LHAGGKF    Y++SGGLHGVG+SVVN
Sbjct: 67  DGSVSVSDNGSGIPVEKHPQ-TGKSTVETVLTILHAGGKFKEGAYKVSGGLHGVGVSVVN 125

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK-VRNKRGTRITFRPDPKIFGDKAGF 222
           ALS +L   V R   ++ Q+FSRG+P + LE  E    +  GT I F PDP+IF     F
Sbjct: 126 ALSTKLVAEVKRNKKLYRQEFSRGVPQTELEVVEDLKEDVTGTTIIFHPDPEIFET-VEF 184

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L K  +  A+L+  VK  ++ ++       +  +E F++ GG+K++++     ++ 
Sbjct: 185 EFEVLEKRFREMAFLNKNVKIIFTDER-------VDRQEIFHYEGGIKSFVEYINRKKTK 237

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           I  ++   +   + T    VE AI + +   E   ++ N I T+EGGTH SG R ++TR 
Sbjct: 238 IHKDVIYFEELAENTQ---VEVAIQYTDSYSENVLTFANNINTEEGGTHLSGFRASVTRT 294

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  Y        ++  ++  DD+      I+SV I  P+F GQTK+KL + + +  V+  
Sbjct: 295 INDYGRKYNIIKEKEENLSGDDVREGMTAIISVKIPNPQFEGQTKSKLGNSETRGIVDGV 354

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    YL +NP  A  +L+  ++    R   RK R+   +++ +  + LPGKL DC +
Sbjct: 355 VSNGLTAYLEENPKVAKIILDKALQARRAREAARKARDLTRKRSILDSMTLPGKLKDCHE 414

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
           +     E+F+VEGDSAGG+AK  R+ + QAVLPLRGKI+NV  A  +KI N+ +I  ++ 
Sbjct: 415 SDISVNEIFLVEGDSAGGTAKDGRDSNIQAVLPLRGKIMNVEKARLDKILNSDEIKAMIT 474

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A G     ++   +LRY K+IIMTDADVDGAHI +LLLTFF++ M  LIE  H+++  PP
Sbjct: 475 AFGTGIDKEFDINNLRYGKIIIMTDADVDGAHIMTLLLTFFFRHMKPLIEHGHIYVAKPP 534

Query: 579 LFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           L+ + +G K + Y +D+E  +  L E  +      +I+R+KGLGEM A QL ET M+ + 
Sbjct: 535 LYGVKRGEKVIRYCYDDEELESALNELGRD--KNYKIARYKGLGEMNAEQLWETTMNPDS 592

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           R LLRV I   L    D  D  + LMG   + R +FI+E A + +++  
Sbjct: 593 RILLRVNIEDVL----DADDVFSTLMGVDVEPRREFIEENAKYAENIDA 637


>gi|49475554|ref|YP_033595.1| DNA topoisomerase IV subunit B [Bartonella henselae str. Houston-1]
 gi|49238360|emb|CAF27584.1| DNA gyrase subunit B [Bartonella henselae str. Houston-1]
          Length = 685

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 426/688 (61%), Positives = 524/688 (76%), Gaps = 7/688 (1%)

Query: 1   MTDDSIDLFSTLPPQSQGS--SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPV 58
           M+D + DLFS L          EK        ++      +  ++Y+A SIR+LEGLEPV
Sbjct: 1   MSDKNKDLFSILNNAQFSINIKEKNLSPSLSSEAANSRKDTQENDYNALSIRVLEGLEPV 60

Query: 59  RMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPV 118
           R+RPGMYIGGTD KALHHLF+E+IDNAMDE +AGYA+ I+VSL+ NG+LTV DNGRGIPV
Sbjct: 61  RLRPGMYIGGTDSKALHHLFAEIIDNAMDEAVAGYADFIDVSLEKNGYLTVTDNGRGIPV 120

Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178
           ENHP+ P KSTLE+I+T LH+GGKFD   Y+ +GGLHGVGISVVNALSD + V VAR+  
Sbjct: 121 ENHPQMPGKSTLEVIMTQLHSGGKFDGKAYQTAGGLHGVGISVVNALSDYMEVEVARERK 180

Query: 179 IFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLS 238
           ++ Q+FSRGIP S LE    V N+RGTR+ F PD KIFG+KA FD  ++ KM +SKAYL 
Sbjct: 181 LYRQRFSRGIPQSGLEDLGDVYNRRGTRVRFHPDSKIFGEKAAFDPEKIYKMARSKAYLF 240

Query: 239 GRVKTCWSCDKEIAEKY-GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           G VK  W+CD  + E    IPEK  F+FP GLK YL + L++   ++SEIF+GKT K   
Sbjct: 241 GGVKIRWNCDPVLLENTKNIPEKAVFHFPDGLKDYLLSSLKDEYRVTSEIFSGKT-KHSN 299

Query: 298 HRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI 357
             G+VEWAIAW   +  + SYCNTI T EGGTHE GLR AL RG+K YAEL  NKRA  I
Sbjct: 300 GHGSVEWAIAWHGGDSHVQSYCNTIPTGEGGTHEMGLRQALLRGLKSYAELIGNKRAAII 359

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
            SDD+MIS   ILSVFI++PEF GQTK +L +++AQR VENA+RDPFDH+L  +P E+TK
Sbjct: 360 TSDDVMISTSAILSVFIKDPEFVGQTKDRLATIEAQRIVENAIRDPFDHWLTNSPQESTK 419

Query: 418 LLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           LL+WV+ER+EER+RRR+ RE+NRKTA+RKLRLPGKLADCSQN A G ELFIVEGDSAGGS
Sbjct: 420 LLDWVVERAEERVRRRQDREINRKTAVRKLRLPGKLADCSQNCAAGAELFIVEGDSAGGS 479

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AKQARNR+NQA+LPLRGKILNVASA  EK+ ++Q I DL+ ALGC TRS+YRE+DLRYE+
Sbjct: 480 AKQARNRANQAILPLRGKILNVASAAHEKMNSSQTIGDLILALGCGTRSKYREKDLRYER 539

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           +IIMTDADVDGAHIASLL+TFF+QEM DLI Q HL+L  PPL+RI+QG K  YA D+ HK
Sbjct: 540 IIIMTDADVDGAHIASLLITFFFQEMPDLIRQGHLYLAVPPLYRISQGGKVAYARDDTHK 599

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
            ++L+  +  GK KIEI RFKGLGEM A QLKET M   KRTLLRV IN     +++T++
Sbjct: 600 DELLKT-EFTGKAKIEIGRFKGLGEMRAEQLKETTMHPQKRTLLRVSIN--AEEVQETKN 656

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
           ++  LMGTK + RF+FIQE ++F  ++ 
Sbjct: 657 TVESLMGTKPEARFRFIQENSTFASNLD 684


>gi|289433379|ref|YP_003463251.1| DNA gyrase, B subunit [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289169623|emb|CBH26157.1| DNA gyrase, B subunit [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 646

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 244/655 (37%), Positives = 374/655 (57%), Gaps = 20/655 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              Q  + +Y+   I++LEGLE VR RPGMYIG T ++ LHHL  E++DNA+DE +AG+ 
Sbjct: 7   TNVQENASDYNEDQIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVWEIVDNAIDEALAGFC 66

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             IE++++ +  +TV DNGRGIP   + K   + T+E+I T LHAGGKF    Y++SGGL
Sbjct: 67  TEIEITIEADNSITVRDNGRGIPTGINEKI-GRPTVEVIFTVLHAGGKFGGGGYKVSGGL 125

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS  L V V R+   + Q+F RG  +  +E++ +  + RGT + F PDP+
Sbjct: 126 HGVGASVVNALSTYLEVYVHREGKKYYQRFERGDVVMDMEEQGET-DYRGTIVHFTPDPQ 184

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   FD   L   T+  A+L+  +       +E  +      +++F++ GG+++Y++
Sbjct: 185 IFSETTEFDFDTLRTRTRELAFLNRGLTISIEDKREEHK-----VRKDFHYEGGIRSYVE 239

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333
              + + +I       + E+       VE ++ +          + N I T EGGTHESG
Sbjct: 240 HLNKAKDVIHEPPIYLEGERDDIM---VEISMQYNTGFSSNIISFANNIHTYEGGTHESG 296

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            + ALTR I  YA   +       ++  +D+      I+S+   +P+F GQTKTKL + +
Sbjct: 297 FKTALTRVINDYARRNKVFKDSDDNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSE 356

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLP 450
           A+   +    +  + ++++NP  A K++E  V+        +R +    + + +    LP
Sbjct: 357 ARSITDKLFSEALNKFMMENPDVAKKIVEKGVVASRARLAAKRAREVARKSSGLEISSLP 416

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I  N
Sbjct: 417 GKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILAN 476

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ M  L++  
Sbjct: 477 EEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAG 536

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPL++I  G +  Y + +   +  L    K    K  I R+KGLGEM   QL +
Sbjct: 537 YIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASLDKD--TKYGIQRYKGLGEMNPEQLWD 594

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T M+   RTLL+V I   +    D  ++   LMG + + R KFI+E A ++ ++ 
Sbjct: 595 TTMNPEHRTLLQVNIKDAI----DADETFEMLMGDRVEPRRKFIEENAQYVKNLD 645


>gi|190710567|gb|ACE95114.1| gyrase subunit B [Bacillus thuringiensis serovar toumanoffi]
          Length = 627

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 264/644 (40%), Positives = 379/644 (58%), Gaps = 21/644 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R   I  QK+ RGIP++ L+      +K GT   F+PDP+IF +  
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E    +  K G     VE A+ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSETFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF++ QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            R+LL+V +   +    +  ++   LMG K + R  FIQE A +
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKY 627


>gi|190710589|gb|ACE95125.1| gyrase subunit B [Bacillus thuringiensis serovar darmstadiensis]
          Length = 627

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 264/644 (40%), Positives = 379/644 (58%), Gaps = 21/644 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R   I  QK+ RGIP++ L+      +K GT   F+PDP+IF +  
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E    +  K G     VE A+ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVALQYNEGYANHIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF++ QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            R+LL+V +   +    +  ++   LMG K + R  FIQE A +
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKY 627


>gi|255283818|ref|ZP_05348373.1| DNA gyrase, B subunit [Bryantella formatexigens DSM 14469]
 gi|255265701|gb|EET58906.1| DNA gyrase, B subunit [Bryantella formatexigens DSM 14469]
          Length = 641

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 252/652 (38%), Positives = 384/652 (58%), Gaps = 18/652 (2%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
              +  Y A  I+ILEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AGY + +
Sbjct: 3   TEVNQEYGADQIQILEGLEAVRKRPGMYIGSTSLRGLHHLVYEIVDNSIDEALAGYCDTV 62

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V+++ +  +TV+DNGRGIPV  + K      +E++ T LHAGGKF    Y++SGGLHGV
Sbjct: 63  DVTINEDNSITVIDNGRGIPVGINHKA-GIPAVEVVFTILHAGGKFGGGGYKVSGGLHGV 121

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIF 216
           G SVVNALS+ L V +  +  I+ Q++ RG  +  L+   +    K GT+I+F PD +IF
Sbjct: 122 GASVVNALSEWLEVNIYHEGKIYFQRYERGHVMDKLKVTGECEPGKTGTKISFLPDKEIF 181

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   FD   L +  +  A+L+  VK      +E       P +  F++ GG++ ++   
Sbjct: 182 EETV-FDFNTLKQRLREMAFLTKNVKIILRDKREE-----EPVERVFHYEGGIREFVTYL 235

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            + ++ +  +I   +  +   +   VE A+   +       S+ N I T EGGTH +G +
Sbjct: 236 NKGKTPLYQDIIYCEGTRDNIY---VEVAMQHNDSYTEGSYSFVNNITTPEGGTHLTGFK 292

Query: 336 VALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
            ALT+    YA+  +  K   S+  +D+      I+S+ I +P+F GQTK KL + +A+ 
Sbjct: 293 NALTKTFNAYAKANKLIKDTESLSGEDIREGMTAIVSIKIEDPQFEGQTKQKLGNSEARG 352

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
            V++ + +    YL Q+P  A  +L+  ++ +      R+ +    RK+A+  L LPGKL
Sbjct: 353 AVDSVVSEQLMIYLEQHPQAAKLILDKSIMAQRAREAARKARDLTRRKSALDGLSLPGKL 412

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS       E++IVEGDSAGGSAK+AR+R+ QA+LPLRGKILNV  A  ++I  N +I
Sbjct: 413 ADCSDKNPANCEIYIVEGDSAGGSAKEARSRATQAILPLRGKILNVEKARLDRIYANAEI 472

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A G      +    LRY K+IIMTDADVDGAHI++LLLTF Y+ M DLI++ +++
Sbjct: 473 KAMITAFGTGIHDDFDITKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKEGYVY 532

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           L  PPL+++ +  K  YA+ ++    IL+E  +    K  I R+KGLGEM A QL ET M
Sbjct: 533 LAQPPLYKLERNKKVWYAYSDDELDAILKEVGRDQNNK--IQRYKGLGEMDAEQLWETTM 590

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D  KR LLRV +++   +  +   +   LMG + + R +FI+E A +  ++ 
Sbjct: 591 DPQKRVLLRVTMDE--ETSSELDLTFTTLMGDQVEPRREFIEENAVYAQNLD 640


>gi|194476918|ref|YP_002049097.1| DNA topoisomerase IV subunit B [Paulinella chromatophora]
 gi|171191925|gb|ACB42887.1| DNA topoisomerase IV subunit B [Paulinella chromatophora]
          Length = 652

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 262/656 (39%), Positives = 379/656 (57%), Gaps = 15/656 (2%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           +     +Y A  I++LEGL PVR RPGMYIG T  + LHHL  EV+DN++DE +AG+ + 
Sbjct: 4   SSKVQADYGAEQIQVLEGLAPVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALAGHCDE 63

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I VSL  +G  T+ DNGRGIP + HP    KS LE +LT LHAGGKF   +Y++SGGLHG
Sbjct: 64  ILVSLSEDGSATISDNGRGIPTDIHP-HTGKSALETVLTVLHAGGKFGGDSYKVSGGLHG 122

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+SVVNALS+ L VTV R++ +  Q+F RG+P+  L  +    N+ GT +TF+PD KIF
Sbjct: 123 VGVSVVNALSEWLEVTVYRKSQLHHQRFERGVPIGLLTAQPGEENRTGTSLTFKPDTKIF 182

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTYLQT 275
                FD + L    +  AYL+G V+  +  ++     + GI  +E + + GG+K Y+  
Sbjct: 183 TTSITFDYSTLAGRLRELAYLNGGVRISFRDERISSGGENGIAYEEVYCYKGGIKEYVAY 242

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLR 335
             + +  + SEI    + K G  +            +  I  + N I T +GGTH  GL+
Sbjct: 243 INKEKDPLHSEIIYVNSHKDGV-QVEAALQWCVDTYSDSILGFANNIRTVDGGTHIEGLK 301

Query: 336 VALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
             LTR +  +A+    ++    ++  +++      +LSV + +PEF GQTKTKL + + +
Sbjct: 302 TVLTRTLNSFAKKRGKRKDSDNNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLGNTEVR 361

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
             V++ + +    YL  NP     +LE  I+        R+ RE V RK+ +    LPGK
Sbjct: 362 GIVDSLVGEALTQYLEFNPSVIELILEKAIQAFNAAEAARRARELVRRKSILESSTLPGK 421

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILN+      KI  N +
Sbjct: 422 LADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTE 481

Query: 513 IMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           I  L+ ALG   + +  +E  LRY +++IMTDADVDGAHI +LLLTFFY+    L+E  +
Sbjct: 482 IQALITALGLGIKGEEFDEKSLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQKSLLEGGY 541

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPL+++ +G    Y +DE      L+ F++  K    I RFKGLGEM+  QL  T
Sbjct: 542 IYIACPPLYKVERGKNHTYCYDENDLSTTLKRFRE--KSNYSIQRFKGLGEMMPKQLWST 599

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685
            MD   R + RVEI   L    +       LMG K   R +FI+  ++ ++  ++ 
Sbjct: 600 TMDPQSRMMKRVEIEDAL----EADRIFTILMGDKVAPRREFIETHSADLNLAELD 651


>gi|126662002|ref|ZP_01733001.1| DNA gyrase, B subunit [Flavobacteria bacterium BAL38]
 gi|126625381|gb|EAZ96070.1| DNA gyrase, B subunit [Flavobacteria bacterium BAL38]
          Length = 646

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 262/661 (39%), Positives = 388/661 (58%), Gaps = 24/661 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + ++   +Y A SI+ LEG+E VRMRP MYIG T  + LHHL  EV+DN++DE +AG+ 
Sbjct: 1   MSEENKKGSYSADSIQALEGMEHVRMRPSMYIGDTGVRGLHHLVYEVVDNSIDEALAGHC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I V+++ +  +TV DNGRGIPV+ H K    S LE+++T + AGGKFD  +Y++SGGL
Sbjct: 61  DTIYVAINEDNSITVEDNGRGIPVDLHKK-EGVSALEVVMTKIGAGGKFDKDSYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+S VNALSD L  TV R+  ++ Q++ RG  + P+++       RGT +TF+PD  
Sbjct: 120 HGVGVSCVNALSDHLRATVYREGKVYEQEYERGKAMYPVKQIGTTEK-RGTMVTFKPDAT 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     +    L    +  ++L+  +    +  + +AE    P  E F+   GLK +++
Sbjct: 179 IFTQTLEYSYDTLASRLRELSFLNKGITITLTDKRHLAEDGSQP-VETFHSKEGLKEFVK 237

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               NR  I S + + + EK       VE A+ +       I SY N I T EGGTH  G
Sbjct: 238 FLDGNREPIISHVISMEHEKSEIP---VEVALIYNTSYTENIFSYVNNINTHEGGTHLQG 294

Query: 334 LRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R+ LTR +KKYA+ +    K    I  DD       I+SV ++EP+F GQTKTKL + +
Sbjct: 295 FRMGLTRTLKKYADSSGLLDKLKFEISGDDFREGLTAIISVKVQEPQFEGQTKTKLGNRE 354

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLP 450
               V  A+ +  ++YL +NP +A  +++ VI  ++ R   +K RE+  RKT +    LP
Sbjct: 355 VVSPVSQAVSEMLENYLEENPNDAKIIVQKVILAAQARHAAKKAREMVQRKTVMGGGGLP 414

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL+DCS+      E+F+VEGDSAGG+AKQ R+R  QA+LPLRGKILNV  A   K+  N
Sbjct: 415 GKLSDCSEQDPAKCEIFLVEGDSAGGTAKQGRDRFFQAILPLRGKILNVEKAMQHKVFEN 474

Query: 511 QQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           ++I ++  ALG    +         E LRY KV+IM DADVDG+HI++L+LTFF++ M +
Sbjct: 475 EEIRNIFTALGVTIGTAEDSKALNLEKLRYHKVVIMCDADVDGSHISTLILTFFFRYMKE 534

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           LIE+ H+++ +PPL+ + +G K  YA ++  +    E       G   I R+KGLGEM A
Sbjct: 535 LIEKGHVYIAAPPLYLVKKGNKKEYAWNDVQRDVANERMG----GSAAIQRYKGLGEMNA 590

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL +T ++   RT  +V I+    SL +     + LMG +   R +FI++ AS+   + 
Sbjct: 591 EQLWDTTLNPENRTFRQVTID----SLAEADRVFSMLMGDEVPPRREFIEKNASYAK-ID 645

Query: 686 T 686
            
Sbjct: 646 A 646


>gi|78183717|ref|YP_376151.1| DNA gyrase subunit B [Synechococcus sp. CC9902]
 gi|78168011|gb|ABB25108.1| DNA gyrase subunit B [Synechococcus sp. CC9902]
          Length = 655

 Score =  625 bits (1611), Expect = e-177,   Method: Composition-based stats.
 Identities = 262/654 (40%), Positives = 378/654 (57%), Gaps = 16/654 (2%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
                + Y A  I++LEGLEPVR RPGMYIG T  + LHHL  EV+DNA+DE +AG+ + 
Sbjct: 4   ASKVQNEYGAEQIQVLEGLEPVRKRPGMYIGTTGPRGLHHLVYEVVDNAVDEALAGHCDR 63

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V L  +G  +V DNGRGIP + HP+   KS LE +LT LHAGGKF    Y++SGGLHG
Sbjct: 64  ITVILGADGSASVTDNGRGIPTDVHPR-TGKSALETVLTVLHAGGKFGAGGYKVSGGLHG 122

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP---LEKKEKVRNKRGTRITFRPDP 213
           VG+SVVNALS+ + VTV RQ  +  Q+F RG  +       + E  + + GT + F PD 
Sbjct: 123 VGVSVVNALSEWVQVTVRRQGQVHRQRFERGAAIGTLLSESQPEAEQGETGTTVCFLPDT 182

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA-EKYGIPEKEEFYFPGGLKTY 272
           +IF     FD A L    +  AYL+G V+  +  ++E +    G P +E +++ GG+K Y
Sbjct: 183 QIFTGGIVFDYATLSARLRELAYLNGGVQIVFRDERESSLSDAGDPHEEIYFYEGGIKEY 242

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHES 332
           +    + +  +  +I    +EK G  +            +  I  + N I T +GGTH  
Sbjct: 243 VAYMNKAKDALHPDIIYVNSEKDGV-QVEAALQWCADAYSDSILGFANNIRTVDGGTHIE 301

Query: 333 GLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           GL+  LTR +  +A+    ++    ++  +++      +LSV + EPEF GQTKTKL + 
Sbjct: 302 GLKTVLTRTLNAFAKKLGKRKEADSNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLGNT 361

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           + +  V+N + +    +L  NP   + +LE  I+        R+ RE V RK+ +    L
Sbjct: 362 EVRGIVDNLVGESLSQFLEFNPSVISLILEKAIQAFNAAEAARRARELVRRKSVLESSTL 421

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILN+      KI  
Sbjct: 422 PGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDSKIYK 481

Query: 510 NQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           N +I  L+ ALG   + +  ++  LRY +V+IMTDADVDGAHI +L+LTFFY+   +L+E
Sbjct: 482 NTEIQALITALGLGIKGEEFDQKSLRYHRVVIMTDADVDGAHIRTLILTFFYRYKRELVE 541

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             ++++  PPL+++ +G    Y ++E   QK L+ F ++   K  I RFKGLGEM+  QL
Sbjct: 542 GGYIYIACPPLYKVERGKNHTYCYNESDLQKTLKGFGEN--AKYTIQRFKGLGEMMPKQL 599

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            ET MD + R + R+EI   L    +       LMG K   R +FI+  +  +D
Sbjct: 600 WETTMDPSTRMMKRIEIEDAL----EADRIFTILMGDKVAPRREFIETHSKELD 649


>gi|190710611|gb|ACE95136.1| gyrase subunit B [Bacillus thuringiensis serovar morrisoni]
          Length = 627

 Score =  625 bits (1611), Expect = e-176,   Method: Composition-based stats.
 Identities = 264/644 (40%), Positives = 379/644 (58%), Gaps = 21/644 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R   I  QK+ RGIP++ L+      +K GT   F+PDP+IF +  
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKAIGDT-DKTGTITRFKPDPEIFKETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E    +  K G     VE A+ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF++ QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            R+LL+V +   +    +  ++   LMG K + R  FIQE A +
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKY 627


>gi|190710601|gb|ACE95131.1| gyrase subunit B [Bacillus thuringiensis serovar neoleonensis]
          Length = 627

 Score =  625 bits (1611), Expect = e-176,   Method: Composition-based stats.
 Identities = 263/644 (40%), Positives = 379/644 (58%), Gaps = 21/644 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R   I  QK+ RGIP++ L+      +K GT   F+PDP+IF +  
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E    +  K G     VE A+ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF++ QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            R+LL+V +   +    +  ++   LMG K + R  FIQ+ A +
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQKNAKY 627


>gi|298207945|ref|YP_003716124.1| DNA gyrase subunit B [Croceibacter atlanticus HTCC2559]
 gi|83850586|gb|EAP88454.1| DNA gyrase subunit B [Croceibacter atlanticus HTCC2559]
          Length = 645

 Score =  625 bits (1611), Expect = e-176,   Method: Composition-based stats.
 Identities = 256/658 (38%), Positives = 385/658 (58%), Gaps = 24/658 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           ++ +   Y A SI+ LEG+E VRMRP MYIG    + LHHL  EV+DN++DE + GY + 
Sbjct: 2   SEESKKQYSADSIQALEGMEHVRMRPSMYIGDVGIRGLHHLVYEVVDNSIDEAMGGYCDT 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+V ++ +  +T  DNGRGIP+  H K    S LE+++T + AGGKFD  +Y++SGGLHG
Sbjct: 62  IDVIINEDNSITTKDNGRGIPIGIHKK-EGVSALEVVMTKIGAGGKFDKDSYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+S VNALSD L  +V +   I+ Q++ RG PL P++      +  GT +TF PD +IF
Sbjct: 121 VGVSCVNALSDHLKASVHKDGKIWEQEYERGKPLYPVKAVGDT-DFSGTVVTFHPDNQIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                ++   L    +  A+L+  +    +  ++  +K      E F+   GL  +++  
Sbjct: 180 QQTIEYNYETLASRMRELAFLNKGLTITLTDKRQTDDKG-EFISERFFSEEGLSEFVRFL 238

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
             NR  I  ++ + + EK G     VE A+ +       + SY N I T EGGTH +G R
Sbjct: 239 DGNRDPIIKDVISMEGEKNGVP---VEVAMIYNSSYAENLHSYVNNINTHEGGTHLAGFR 295

Query: 336 VALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
             LT  +KK+A+ +    K    I  DD       I+SV + EP+F GQTKTKL + +  
Sbjct: 296 RGLTSSLKKFADASGMLDKLKFDIAGDDFREGLTAIISVKVSEPQFEGQTKTKLGNREVT 355

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGK 452
             V  A+ +  + ++ +NP +A  ++E VI  ++ R   +K RE+  RKT +    LPGK
Sbjct: 356 SAVSQAVSEMIEIHMEENPNDAKTIIEKVILAAQARHAAKKAREMVQRKTVMSIGGLPGK 415

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L+DCS       E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV  A S K+  N++
Sbjct: 416 LSDCSNQDPAECEVFLVEGDSAGGTAKQGRDRAFQAILPLRGKILNVEKAMSHKVFENEE 475

Query: 513 IMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
           I ++  ALG    ++   +      LRY K++IM DADVDG+HIA+L+LTFF++ M +LI
Sbjct: 476 IKNIFTALGVTIGTEEDSKALNLSKLRYHKIVIMCDADVDGSHIATLILTFFFRYMKELI 535

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           E  H+++ +PPL+ I +G K  YA +E+ ++ I  EF    KG + + R+KGLGEM A Q
Sbjct: 536 EAGHIYIATPPLYLIKKGQKKRYAWNEDEREAIANEF----KGSVSVQRYKGLGEMNAEQ 591

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           L +T M+   RTL +V I+  +    +     + LMG     R +FI++ A +  ++ 
Sbjct: 592 LWDTTMNPEFRTLRQVAIDNGV----EADRIFSMLMGDDVPPRREFIEKNAKYA-NID 644


>gi|225010581|ref|ZP_03701052.1| DNA gyrase, B subunit [Flavobacteria bacterium MS024-3C]
 gi|225005410|gb|EEG43361.1| DNA gyrase, B subunit [Flavobacteria bacterium MS024-3C]
          Length = 646

 Score =  625 bits (1611), Expect = e-176,   Method: Composition-based stats.
 Identities = 257/661 (38%), Positives = 383/661 (57%), Gaps = 24/661 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +    NY A SI+ LEG+E VRMRP MYIG    + LHHL  EV+DN++DE + G+ 
Sbjct: 1   MSEELEKKNYSADSIQALEGMEHVRMRPSMYIGDVGTRGLHHLVYEVVDNSIDEAMGGHC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I + ++ +  ++V DNGRGIPV  H K    S L++++T + AGGKFD  +Y++SGGL
Sbjct: 61  DTITIDINEDNSISVTDNGRGIPVGMHKK-EGVSALQVVMTKIGAGGKFDKDSYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+S VNALS +L  TV     I+ Q++ RG  + P+    +  +K GT +TF PDP 
Sbjct: 120 HGVGVSCVNALSVKLQATVYVDGKIWEQEYERGKAVYPVRSIGET-DKSGTTVTFWPDPT 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     +    L    +  +YL+  VK   +  +   E+ G    E FY   GLK +++
Sbjct: 179 IFTQTVEYSYETLSNRMRELSYLNKGVKLTITDKR-QKEEDGSFVSEVFYSDEGLKEFIK 237

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333
               NR  +   + + + EK G     VE A+ +     E    Y N I T EGGTH SG
Sbjct: 238 FLDGNREQLIKNVISIEGEKNGIP---VEVAMVYNTSYTENLHSYVNNINTHEGGTHLSG 294

Query: 334 LRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F GQTKTKL + +
Sbjct: 295 FRRGLTTTLKKYADASGLLDKLKFEISGDDFREGLTAIISVKVAEPQFEGQTKTKLGNRE 354

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLP 450
               V  A+ +   +YL +NP +A  +++ V+  ++ R    K RE+  RKT +    LP
Sbjct: 355 VSAAVSQAVSEMLANYLEENPDDAKIIVQKVVLAAQARHAANKAREMVQRKTVMSIGGLP 414

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV  A   ++ +N
Sbjct: 415 GKLSDCSEQDPSLCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHRVFDN 474

Query: 511 QQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           ++I ++  ALG    ++        + LRY KV+IM DADVDG+HI +L+LTFF++ M +
Sbjct: 475 EEIKNIYTALGVSIGTEEDSKALNLDKLRYHKVVIMCDADVDGSHIETLILTFFFRYMRE 534

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           LI+  H+++ +PPL+ + +G K  YA +++ +  I EEF     G + I R+KGLGEM A
Sbjct: 535 LIDGGHVYIATPPLYLVKKGAKKRYAWNDKERDAIAEEF----NGSVSIQRYKGLGEMNA 590

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL +T M+   RTL ++ I+       +T  + + LMG +   R +FI++ A +  ++ 
Sbjct: 591 EQLWDTTMNPEFRTLRQITIDNAT----ETDRTFSMLMGDEVPPRKEFIEKNAVYA-NID 645

Query: 686 T 686
            
Sbjct: 646 A 646


>gi|260437693|ref|ZP_05791509.1| DNA gyrase, B subunit [Butyrivibrio crossotus DSM 2876]
 gi|292809919|gb|EFF69124.1| DNA gyrase, B subunit [Butyrivibrio crossotus DSM 2876]
          Length = 638

 Score =  624 bits (1610), Expect = e-176,   Method: Composition-based stats.
 Identities = 259/647 (40%), Positives = 377/647 (58%), Gaps = 20/647 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y A  I+ILEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AG+   I V ++ 
Sbjct: 6   YTADQIQILEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNSVDEALAGFCTEIFVQINE 65

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +  +TV+DNGRGIPV  + K      +E++ T LHAGGKF    Y++SGGLHGVG SVVN
Sbjct: 66  DNSITVIDNGRGIPVGINAK-SGLPGVEVVFTILHAGGKFGGGGYKVSGGLHGVGASVVN 124

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAGF 222
           ALS+ L V V +   I+ Q++ RG  + PL+        K GT + F PD +IF D   +
Sbjct: 125 ALSEWLEVKVFQNGNIYEQRYERGKVMYPLKIVGSCDMEKTGTEVHFLPDKEIFEDTV-Y 183

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L +  +  A+L+  ++     D+E  ++      + F++ GG+K Y++   +    
Sbjct: 184 DYNVLKQRLREMAFLTKNLRITLKDDREDKKE------KVFHYEGGIKEYVEYLNKGNQA 237

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           +  EI   +  K G     VE A    +   +    + N I T EGGTH +G R A+T+ 
Sbjct: 238 LYDEIIYCEGNKNGV---NVEVAFQHNDGYSDNVYGFVNNITTPEGGTHVTGFRNAVTKT 294

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
              YA   +   ++  S+  +D+      I+S+ I +P+F GQTK KL + +A+  VE+ 
Sbjct: 295 FNDYARSNKILKEKDPSLSGEDIREGLTAIISIKIADPQFEGQTKQKLGNSEARGAVESV 354

Query: 400 LRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
           + +   ++L QNP  A  + E  V+ +      R+ +    RKTA+    LPGKLADCS 
Sbjct: 355 VTEQLTYFLEQNPSVAKTICEKSVLAQRAREAARKARDLTRRKTALDGFNLPGKLADCSD 414

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
             +   E+FIVEGDSAGGSAK AR R  QA+LPLRGKILNV  A  ++I  N +I  ++ 
Sbjct: 415 KNSENCEIFIVEGDSAGGSAKSARKRETQAILPLRGKILNVEKARLDRILGNAEIRTMIT 474

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A G      +    LRY K+IIMTDADVDGAHI++LLLTFFY+ M DLI++ H++L  PP
Sbjct: 475 AFGTGIHEDFDISKLRYNKIIIMTDADVDGAHISTLLLTFFYRFMPDLIKKGHVYLAQPP 534

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+++ +  K  YA+ +E    IL E  +    K  I R+KGLGEM ASQL ET MD   R
Sbjct: 535 LYKLEKNKKVWYAYSDEELSAILAEVGRDQNNK--IQRYKGLGEMDASQLWETTMDPEHR 592

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            L +V  +++++S  +   + + LMG K + R +FI+  A ++ ++ 
Sbjct: 593 ILKKVYFDEEISS--EIDLTFSTLMGDKVEPRREFIETNAKYVKNLD 637


>gi|190710547|gb|ACE95104.1| gyrase subunit B [Bacillus thuringiensis serovar alesti]
          Length = 627

 Score =  624 bits (1610), Expect = e-176,   Method: Composition-based stats.
 Identities = 263/644 (40%), Positives = 378/644 (58%), Gaps = 21/644 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R   I  QK+ RGIP++ L+      +K GT   F+PDP+IF +  
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            ++   L    +  A+L+  +K      +   +K      +EF++ GG+K+Y++    ++
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKRGHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E    +  K G     VE A+ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF++ QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            R+LL+V +   +    +  ++   LMG K + R  FIQE A +
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKY 627


>gi|220908378|ref|YP_002483689.1| DNA gyrase subunit B [Cyanothece sp. PCC 7425]
 gi|219864989|gb|ACL45328.1| DNA gyrase, B subunit [Cyanothece sp. PCC 7425]
          Length = 645

 Score =  624 bits (1610), Expect = e-176,   Method: Composition-based stats.
 Identities = 256/651 (39%), Positives = 366/651 (56%), Gaps = 14/651 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + NY A  I++LEGLEPVR RPGMYIG T  + LHHL  EV+DN++DE +AGY   I V 
Sbjct: 2   TTNYSADQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALAGYCKNILVE 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L+ +G +TV D+GRGIP +   K   KS LE +LT LHAGGKF    Y++SGGLHGVG+S
Sbjct: 62  LNPDGSVTVTDDGRGIPTDIVSK-TGKSALETVLTVLHAGGKFGGGGYKVSGGLHGVGVS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  L   V R   +F+Q+F RG+P + L+ +    N+ GT I F PD +IF +  
Sbjct: 121 VVNALSSWLEAKVWRDGKVFTQRFERGLPATDLKAQPSGGNRTGTAIQFMPDAEIFTETI 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   L    +  AYL+  VK  +   +    K   P  E +++ GG+K Y+     ++
Sbjct: 181 EFDYKTLSGRLRELAYLNAGVKIEFRDGRLDLLKRDEPLLETYFYEGGIKEYVSYMNVDK 240

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
             +  EI   + E+    +  V            +  + N I T +GGTH  GL+  LTR
Sbjct: 241 EPLHQEIIYVQGERNDV-QVEVALQWCTDAYTDNLLGFANNIRTIDGGTHLEGLKAVLTR 299

Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +  +A      +    ++  +++      ++SV + EPEF GQTKTKL + + +  V++
Sbjct: 300 TLNNFARKRNKLKEGDPNLAGENVREGMTAVISVKVPEPEFEGQTKTKLGNTEVRGIVDS 359

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            + +    YL   P     +LE  I+        R+ RE V RK+ +    LPGKLADCS
Sbjct: 360 LVGEVLTEYLDFRPAVVDSILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCS 419

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                  E+FIVEGDSAGGSAKQ R+R  QA+LPLRGKILN+      KI  N +I  L+
Sbjct: 420 SRDPREAEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNNEIQSLI 479

Query: 518 QALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
            ALG   + +  +  +LRY K+I MTDADVDGAHI +LLLTFFY+    L++Q ++++  
Sbjct: 480 TALGLGIKGEEFDASNLRYHKIIAMTDADVDGAHIRTLLLTFFYRYQRQLVDQGYIYVAC 539

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL++I +G    Y +++  + +I+    ++ +   EI RFKGLGEM+  QL +T M+  
Sbjct: 540 PPLYKIERGRNHYYCYNDRERDQIIAGLGENAR--YEIQRFKGLGEMMPQQLWDTTMNPE 597

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA--SFIDDVG 685
            RTL +V I        +     N LMG +   R +FI+       + D+ 
Sbjct: 598 TRTLKQVTIED----AAEADRIFNILMGDRVAPRREFIETYGPRLNLADLD 644


>gi|194335198|ref|YP_002016992.1| DNA gyrase, B subunit [Pelodictyon phaeoclathratiforme BU-1]
 gi|194307675|gb|ACF42375.1| DNA gyrase, B subunit [Pelodictyon phaeoclathratiforme BU-1]
          Length = 649

 Score =  624 bits (1610), Expect = e-176,   Method: Composition-based stats.
 Identities = 260/666 (39%), Positives = 375/666 (56%), Gaps = 25/666 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86
            +  D  +        +Y A++I++L+G+E VRMRP MYIG    + LHHL  E++DN++
Sbjct: 1   MQEDDILSLPTPPTEASYGATNIQVLDGIEHVRMRPAMYIGDIYSRGLHHLVYEIVDNSI 60

Query: 87  DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146
           DE + G+ + I VSL+ +G +TV+D+GRGIPV+ HP+   KS LE+++T + AGGKFD  
Sbjct: 61  DETLGGFNDYIFVSLNPDGSVTVIDHGRGIPVDIHPE-KQKSALELVMTVIGAGGKFDKG 119

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
            Y++SGGLHGVG SVVNALS+   V V+R   ++ Q+F RG+P   ++      + RGT+
Sbjct: 120 AYKVSGGLHGVGASVVNALSEWCEVEVSRDGKLYFQRFERGVPQGDVKVIG-SSDHRGTK 178

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
            TF PD  IF          ++   +  A+L+  +                  +E F++ 
Sbjct: 179 TTFLPDHLIFKT-TELRKDIIIDRMRELAFLNKELSITVQD--------TEGFQEIFHYE 229

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+K ++Q   +NR  +  E      E+  T    VE A+ + +     + SY N I T 
Sbjct: 230 GGIKEFVQFTDQNRLNLLKEPIYLYGERDSTI---VEIALQYNDTYQENVFSYVNNINTH 286

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQT 383
           EGGTH +G R ALTR +  YA+     + +   +  DD       ++SV + EP+F GQT
Sbjct: 287 EGGTHVTGFRKALTRTLNAYAQKNDLLKNLKLSLTGDDFKEGLTAVISVKVAEPQFEGQT 346

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKT 442
           KTKL + + Q  VE  + +    +   NP     ++E V   +  R   R+ +E   RK+
Sbjct: 347 KTKLGNSETQSIVETVINEQLSEFAESNPNVLKMIIEKVKGAAMSREAARRAKELTRRKS 406

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
            +    LPGKLADCS N     EL+IVEGDSAGGSAKQ R+RS QA+LPL+GKILNV  A
Sbjct: 407 VLESSGLPGKLADCSINDPEHCELYIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKA 466

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
              K+  N++I  ++ ALG     +    E LRY K+IIMTDADVDGAHI +LLLTFF++
Sbjct: 467 RLHKMLENEEIKTIILALGTSFGEEEFSVEKLRYGKIIIMTDADVDGAHIRTLLLTFFFR 526

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKK--HGKGKIEISRFKG 619
            M  LIE   +F+  PPL+ +  G    YA D+E +  I +  KK   GK  I I R+KG
Sbjct: 527 YMRALIEAGRVFIAQPPLYLVKSGKDQQYAWDDEERNSISDGMKKMQKGKANIHIQRYKG 586

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679
           LGEM   QL  T MD   R+LL V +   +    +     + LMG K + R +FI++ A 
Sbjct: 587 LGEMNPEQLWSTTMDPAHRSLLLVNVENAM----EADQVFSTLMGDKVEPRREFIEKNAR 642

Query: 680 FIDDVG 685
           ++  + 
Sbjct: 643 YVRRLD 648


>gi|302390804|ref|YP_003826624.1| DNA gyrase subunit B [Acetohalobium arabaticum DSM 5501]
 gi|302202881|gb|ADL11559.1| DNA gyrase subunit B [Acetohalobium arabaticum DSM 5501]
          Length = 639

 Score =  624 bits (1610), Expect = e-176,   Method: Composition-based stats.
 Identities = 274/646 (42%), Positives = 393/646 (60%), Gaps = 22/646 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YDA  I++LEGLE VR RPGMY+GGT  + LHHL  EV+DN++DE +AGY + IEV ++ 
Sbjct: 11  YDADQIQVLEGLEAVRKRPGMYVGGTGARGLHHLVYEVVDNSIDEALAGYCDNIEVIIEP 70

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
              +TV+D+GRGIP+ +HP   NK  +EI++T LHAGGKFDN  Y++SGGLHGVG+SVVN
Sbjct: 71  GNVVTVIDDGRGIPISSHPNL-NKPAVEIVMTVLHAGGKFDNEGYKVSGGLHGVGVSVVN 129

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS+ L V V R N I+ Q++  G+P+  L    + +   GT I F+PD +IF     F+
Sbjct: 130 ALSEWLEVEVMRDNKIYHQRYEEGVPVKDLTVIGESQ-ASGTMIKFKPDLEIFESI-DFE 187

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
             +L+K  +  AYL+  +K      +    K      + F + GG+ +++Q   EN+  I
Sbjct: 188 YKKLIKRLKELAYLNKGIKIEIKDKRRDEIKT-----DIFQYDGGIVSFVQELNENKDPI 242

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
             E    +TE++  H   +E AI + E     I ++ N I T EGG H SG + ALTR I
Sbjct: 243 HEEPIYFETEEEDNH---IEVAIQYNETYVDNIFTFANNINTHEGGNHLSGFKSALTRTI 299

Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             YA       +   ++  DD+    V I++V + +P+F GQTKTKL + + +  V++ +
Sbjct: 300 NDYARRHDYLKEDDSNLSGDDIREGIVAIVNVKLPDPQFEGQTKTKLANSEVRGIVDSVV 359

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQN 459
            +  D +L ++P   + +++  I+ +E R   +K RE   RK+A+    LPGKLADCS  
Sbjct: 360 SENLDRFLEEDPEIGSIIVQKAIKAAEARKAAKKARELTRRKSALTSTALPGKLADCSSR 419

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
               +EL+IVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A   KI NN +I  L+ A
Sbjct: 420 DPEESELYIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARLNKILNNNEIRSLITA 479

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           LG     ++  E  RY+K+IIMTDADVDGAHI +LLLTFFY+ M  L+E  ++++  PPL
Sbjct: 480 LGTGIGKEFDMEQARYKKIIIMTDADVDGAHIRTLLLTFFYRYMRPLLEAGNIYIAQPPL 539

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           +++ +G K  Y +++   +++L E    G+  I I R+KGLGEM   QL ET MD   RT
Sbjct: 540 YKVNKGRKEYYVYNDRKLEELLNEI---GRSGISIQRYKGLGEMNPKQLWETTMDPENRT 596

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            L+V+I   +       D    LMG K   R KFIQ+ A  + ++ 
Sbjct: 597 TLQVQIEDAVM----ADDIFTTLMGDKVAPRRKFIQKHAKEVKEID 638


>gi|123967056|ref|YP_001012137.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9515]
 gi|123201422|gb|ABM73030.1| DNA gyrase, subunit B [Prochlorococcus marinus str. MIT 9515]
          Length = 655

 Score =  624 bits (1610), Expect = e-176,   Method: Composition-based stats.
 Identities = 263/657 (40%), Positives = 387/657 (58%), Gaps = 15/657 (2%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           S    +   S++Y A  I++LEGLEPVR RPGMYIG T  + LHHL  EV+DN++DE +A
Sbjct: 2   SEEKRSNKISNDYGAEQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+ + IE+ L  +G  ++ DNGRGIP + HP+   KS LE +LT LHAGGKF +  Y++S
Sbjct: 62  GHCDQIEIVLKDDGSASISDNGRGIPTDIHPR-TGKSALETVLTVLHAGGKFGSGGYKVS 120

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITF 209
           GGLHGVGISVVNALS+ ++VTV R+ + F+Q+F RGI    L+ ++      ++GT I F
Sbjct: 121 GGLHGVGISVVNALSEWVNVTVFREGSEFTQRFERGITKGELKTQKQQNKSLRKGTIICF 180

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +PD  IF D   FD A L    +  AYL+G VK  +  +++        E E + + GG+
Sbjct: 181 KPDTTIFTDGIEFDYALLSSRLRELAYLNGGVKIIFIDERQKLPDGSFKE-EIYLYDGGI 239

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGT 329
           K Y+Q   + +  I SEI    ++K   +             +  I  + N I T +GGT
Sbjct: 240 KEYVQYINKEKESIHSEIIYVDSQKDNVY-VEAALQWCSDVYSDNILGFANNIRTIDGGT 298

Query: 330 HESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  GL+  LTR     A+    ++ +  ++  +++      +LSV + +PEF GQTKTKL
Sbjct: 299 HIEGLKTVLTRTFNAIAKKRGKRKEVDKNLSGENIREGLTVVLSVKVPDPEFEGQTKTKL 358

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
            + + +  V++ + +    Y+  NP     +LE  I+        ++ R+ V RK+ +  
Sbjct: 359 GNTEVRGIVDSLIGESLTKYMEFNPNVFDLILEKAIQSFNAAEAAKRARDLVRRKSVLES 418

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADCS     G+E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILN+      K
Sbjct: 419 STLPGKLADCSSRDPSGSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNIEKTDDTK 478

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           I  N +I  L+ ALG   + +  + + LRY +V+IMTDADVDGAHI +LLLTFFY+   +
Sbjct: 479 IYKNTEIQSLITALGLGIKGEEFDVNSLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRE 538

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           L+E+  +++  PPL+++ +G    Y ++E   +K +E+F +  K    I RFKGLGEM+ 
Sbjct: 539 LVEKGFIYIACPPLYKVERGKNHKYCYNEGQLKKTIEDFGE--KANYNIQRFKGLGEMMP 596

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            QL +T M+   R + +VEI   L    +     N LMG K   R +FI+  ++ +D
Sbjct: 597 KQLWDTTMNPETRMMKKVEIEDAL----EADRIFNILMGDKVAPRREFIETHSANLD 649


>gi|295094327|emb|CBK83418.1| DNA gyrase subunit B [Coprococcus sp. ART55/1]
          Length = 639

 Score =  624 bits (1610), Expect = e-176,   Method: Composition-based stats.
 Identities = 266/649 (40%), Positives = 378/649 (58%), Gaps = 19/649 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           DNY A  I++LEGLE VR RPGMYIG T    LHHL  E++DN++DE +AGY   I+V +
Sbjct: 4   DNYGAEQIQVLEGLEAVRKRPGMYIGSTSSTGLHHLVYEIVDNSVDEALAGYCTHIQVYI 63

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +  +TVVD+GRGIPV  H K      +E++ T LHAGGKF    Y++SGGLHGVG SV
Sbjct: 64  NEDNSITVVDDGRGIPVGIHKKQ-GIPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGASV 122

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKA 220
           VNALS  L V + R   ++ Q++ +G  +  L+   +      GT++TF PD  IF D  
Sbjct: 123 VNALSTWLEVEITRDGKVYKQRYEKGKVMYKLQVIGEAPEGVSGTKVTFLPDHTIFEDNI 182

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +D   L    +  A+L+  +K   +  + I EK        F++ GG+K ++     +R
Sbjct: 183 -YDYDILRNRLREMAFLTKGLKISLTDKRLIPEKVRS-----FHYEGGIKEFVTYLNRHR 236

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
             + +E+   +  + G    +VE A+   +       S+ N I T EGGTH +G + A+T
Sbjct: 237 DPLYNEVIYCEGVRDGI---SVEVALQHNDSYNESTYSFVNNINTPEGGTHLTGFKSAIT 293

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           +    YA       ++  ++  DDL      I+S+ I +P+F GQTK KL + +A+  VE
Sbjct: 294 KVFNDYARKNNIIKEKDDNLSGDDLREGLAAIVSIKISDPQFEGQTKQKLGNSEARPAVE 353

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL-PGKLADC 456
           + + +   +YL QNP  A  ++         R+  RK R+V RK  +      PGKLADC
Sbjct: 354 SVVTEQLTYYLEQNPQIAKIIVNKAAVAQRARIAARKARDVARKANLSDNMALPGKLADC 413

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S       E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV  A  ++I  N++I  +
Sbjct: 414 SDKDPKNCEIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARIDRILGNEEIKAM 473

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A G      +  E LRY K+IIMTDADVDGAHIA+LLLTFFY+ M DLI + H++L  
Sbjct: 474 ITAFGTGIHENFNIEKLRYNKIIIMTDADVDGAHIATLLLTFFYRFMPDLIRKGHVYLAQ 533

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+++ +  K  YA+ ++    IL+E  +    K  I R+KGLGEM A QL ET MD  
Sbjct: 534 PPLYKLEKNKKVWYAYSDDELNSILDEVGRDQNNK--IQRYKGLGEMDAEQLWETTMDPE 591

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           KR LLRV I+ D  S  D   + N LMG K + R +FI+  A ++ ++ 
Sbjct: 592 KRILLRVAIDDDDESEIDM--TFNVLMGDKVEPRREFIETNAKYVKNLD 638


>gi|190710569|gb|ACE95115.1| gyrase subunit B [Bacillus thuringiensis serovar alesti]
          Length = 627

 Score =  624 bits (1610), Expect = e-176,   Method: Composition-based stats.
 Identities = 264/644 (40%), Positives = 379/644 (58%), Gaps = 21/644 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTALHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R   I  QK+ RGIP++ L+      +K GT   F+PDP+IF +  
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E    +  K G     VE A+ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF++ QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            R+LL+V +   +    +  ++   LMG K + R  FIQE A +
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKY 627


>gi|190710559|gb|ACE95110.1| gyrase subunit B [Bacillus thuringiensis serovar nigeriensis]
          Length = 627

 Score =  624 bits (1610), Expect = e-176,   Method: Composition-based stats.
 Identities = 265/644 (41%), Positives = 380/644 (59%), Gaps = 21/644 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R+  I  QK+ RGIP++ L+      ++ GT   F+PDP+IF +  
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +D   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E    +  K G     VE ++ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K++E   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF+I QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKIQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            R+LL+V +   +    +  ++   LMG K + R  FIQE A +
Sbjct: 588 VRSLLQVSLQDAI----EADEAFEILMGDKVEPRRNFIQENAKY 627


>gi|116071704|ref|ZP_01468972.1| DNA topoisomerase IV subunit B [Synechococcus sp. BL107]
 gi|116065327|gb|EAU71085.1| DNA topoisomerase IV subunit B [Synechococcus sp. BL107]
          Length = 655

 Score =  624 bits (1610), Expect = e-176,   Method: Composition-based stats.
 Identities = 262/654 (40%), Positives = 378/654 (57%), Gaps = 16/654 (2%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
                + Y A  I++LEGLEPVR RPGMYIG T  + LHHL  EV+DNA+DE +AG+ + 
Sbjct: 4   ASKVQNEYGAEQIQVLEGLEPVRKRPGMYIGTTGPRGLHHLVYEVVDNAVDEALAGHCDR 63

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V L  +G  +V DNGRGIP + HP+   KS LE +LT LHAGGKF    Y++SGGLHG
Sbjct: 64  ITVILGADGSASVTDNGRGIPTDVHPR-TGKSALETVLTVLHAGGKFGAGGYKVSGGLHG 122

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS---PLEKKEKVRNKRGTRITFRPDP 213
           VG+SVVNALS+ + VTV RQ  +  Q+F RG  +       + E  + + GT + F PD 
Sbjct: 123 VGVSVVNALSEWVQVTVRRQGQVHRQRFERGAAIGSLLSESQSEAEQGETGTTVCFLPDL 182

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA-EKYGIPEKEEFYFPGGLKTY 272
           +IF     FD A L    +  AYL+G V+  +  ++E +    G P +E +++ GG+K Y
Sbjct: 183 QIFTGGIVFDYATLSARLRELAYLNGGVQIVFRDEREASLSDAGDPHEEIYFYEGGIKEY 242

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHES 332
           +    + +  +  +I    +EK G  +            +  I  + N I T +GGTH  
Sbjct: 243 VAYMNKAKDALHPDIIYVNSEKDGV-QVEAALQWCADAYSDSILGFANNIRTVDGGTHIE 301

Query: 333 GLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           GL+  LTR +  +A+    ++    ++  +++      +LSV + EPEF GQTKTKL + 
Sbjct: 302 GLKTVLTRTLNAFAKKLGKRKDADSNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLGNT 361

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           + +  V+N + +    +L  NP   + +LE  I+        R+ RE V RK+ +    L
Sbjct: 362 EVRGIVDNLVGEALSQFLEFNPSVISLILEKAIQAFNAAEAARRARELVRRKSVLESSTL 421

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILN+      KI  
Sbjct: 422 PGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDSKIYK 481

Query: 510 NQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           N +I  L+ ALG   + +  ++  LRY +V+IMTDADVDGAHI +L+LTFFY+   +L+E
Sbjct: 482 NTEIQALITALGLGIKGEEFDQKSLRYHRVVIMTDADVDGAHIRTLILTFFYRYKRELVE 541

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             ++++  PPL+++ +G    Y ++E   QK L+ F ++   K  I RFKGLGEM+  QL
Sbjct: 542 GGYIYIACPPLYKVERGKNHTYCYNESDLQKTLKGFGEN--AKYTIQRFKGLGEMMPKQL 599

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            ET MD + R + R+EI   L    +       LMG K   R +FI+  +  +D
Sbjct: 600 WETTMDPSTRMMKRIEIEDAL----EADRIFTILMGDKVAPRREFIETHSKELD 649


>gi|291548764|emb|CBL25026.1| DNA gyrase subunit B [Ruminococcus torques L2-14]
          Length = 644

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 258/647 (39%), Positives = 374/647 (57%), Gaps = 18/647 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y A  I+ILEGLE VR RPGMYIG T  + LHHL  E++DNA+DE +AGY + I+V ++
Sbjct: 11  EYGADQIQILEGLEAVRKRPGMYIGSTSVRGLHHLVYEIVDNAVDEALAGYCDKIQVDIN 70

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV DNGRGIPV  + K      +E++ T LHAGGKF    Y++SGGLHGVG SVV
Sbjct: 71  KDNSITVTDNGRGIPVGINHKA-GLPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGASVV 129

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAG 221
           NALS+ L V +A +  I+ Q++ RG     L          RGT++TF PD +IF +   
Sbjct: 130 NALSEWLEVEIANEGKIYKQRYERGKVCYKLRVDRDCEPEMRGTKVTFLPDKEIFEETV- 188

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L +  +  A+L+  +K      +E      I     F++ GG+K ++    ++++
Sbjct: 189 FDYNTLKQRFREMAFLTKGLKIHLRDLREEEIHEHI-----FHYEGGIKEFVTYLNKSKT 243

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            +  +I   +  K       VE A+   +        + N I T EGGTH +G R ALT+
Sbjct: 244 ALYEQIIYCEGMKDNV---AVEVAMQHNDSYNETTYGFVNNITTPEGGTHIAGFRSALTK 300

Query: 341 GIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
               Y +  +  K    +  +D+      I+SV I +P+F GQTK KL + +A+  V+N 
Sbjct: 301 VFNDYGKKNKLLKENEQLSGEDIREGLTAIVSVKIEDPQFEGQTKQKLGNSEARGAVDNI 360

Query: 400 LRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
           +R   + +L QNP  A  ++E  V+ +      R+ +    RK+A+  + LPGKLADCS 
Sbjct: 361 VRTQLEIFLEQNPSVAKMIIEKSVMAQRAREAARKARDLTRRKSALEGMSLPGKLADCSD 420

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV  A  +KI  N +I  ++ 
Sbjct: 421 KDPSKCEIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDKIYGNAEIKAMIT 480

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A G      +    LRY K+IIMTDADVDGAHI++LLLTF Y+ M DLI++ +++L  PP
Sbjct: 481 AFGTGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKEGYVYLAQPP 540

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+++ +  K  YA+ ++   +IL E  +    K  I R+KGLGEM A QL ET MD   R
Sbjct: 541 LYKLEKNKKVWYAYSDDELNQILTEVGRDSNNK--IQRYKGLGEMDAEQLWETTMDPEHR 598

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            LLRV ++    +  +   +   LMG K + R +FI+E A ++ ++ 
Sbjct: 599 ILLRVTMDD--ETSSELDLTFTTLMGDKVEPRREFIEENAKYVQNLD 643


>gi|299147112|ref|ZP_07040179.1| DNA gyrase, B subunit [Bacteroides sp. 3_1_23]
 gi|298514997|gb|EFI38879.1| DNA gyrase, B subunit [Bacteroides sp. 3_1_23]
          Length = 652

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 261/653 (39%), Positives = 383/653 (58%), Gaps = 21/653 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y A SI++LEGLE VR RP MYIG    K LHHL  E++DN++DE +AGY + IEV ++
Sbjct: 12  SYSADSIQVLEGLEAVRKRPAMYIGDISVKGLHHLVYEIVDNSIDEALAGYCDHIEVIIN 71

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV DNGRGIPV+ H K   KS LE+ +T LHAGGKFD  +Y++SGGLHGVG+S V
Sbjct: 72  EDNSITVQDNGRGIPVDYHEK-EKKSALEVAMTVLHAGGKFDKGSYKVSGGLHGVGMSCV 130

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  +   V R   I+ Q++  G PL  +++     +  GTR  F PD  IF +   +
Sbjct: 131 NALSTHMTTQVFRNGKIYQQEYEIGKPLYSVKEVG-TADITGTRQQFWPDNTIFTETV-Y 188

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L    +  AYL+  ++   +  + +  + G  + E+FY   GL+ +++    +R  
Sbjct: 189 DYKILASRLRELAYLNAGLRISLTD-RRVVNEDGSFKGEQFYSEEGLREFVRFIESSREH 247

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           + +++    +EK+G     +E AI +     E   SY N I T EGGTH +G R ALTR 
Sbjct: 248 LINDVIYLNSEKQGIP---IEVAIMYNTGFSENVHSYVNNINTIEGGTHLAGFRRALTRT 304

Query: 342 IKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +KKYAE ++   K  + I  DD       ++SV ++EP+F GQTKTKL + +    V+ A
Sbjct: 305 LKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVQEPQFEGQTKTKLGNNEVMGAVDQA 364

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458
           + +   +YL ++P EA  +++ VI  +  R   RK RE+ ++ + +    LPGKLADCS 
Sbjct: 365 VGEVLAYYLEEHPKEAKTIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGKLADCSD 424

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
             A   ELF+VEGDSAGG+AKQ RNR  QA+LPLRGKILNV  A   K   + +I ++  
Sbjct: 425 KDATKCELFLVEGDSAGGTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESDEIRNIYT 484

Query: 519 ALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
           ALG    +         + LRY K+IIMTDADVDG+HI +L++TFF++ M  +I+  +L+
Sbjct: 485 ALGVTIGTDEDSKEANIQKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQIIQNGYLY 544

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           + +PPL+   +G    Y   +  +QK ++ +    +  I   R+KGLGEM A QL ET M
Sbjct: 545 IATPPLYLCKKGKVEEYCWTDAQRQKFIDTYGGGSENAIHTQRYKGLGEMNAQQLWETTM 604

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           D   R L +V I+    +  +     + LMG     R +FI+E A++  ++ T
Sbjct: 605 DPENRMLKQVNID----NAAEADYIFSMLMGEDVGPRREFIEENATYA-NIDT 652


>gi|119487794|ref|ZP_01621303.1| DNA topoisomerase IV subunit B [Lyngbya sp. PCC 8106]
 gi|119455627|gb|EAW36764.1| DNA topoisomerase IV subunit B [Lyngbya sp. PCC 8106]
          Length = 645

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 249/651 (38%), Positives = 369/651 (56%), Gaps = 14/651 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +Y A  I++LEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AG+   IEV 
Sbjct: 2   TSSYSADQIQVLEGLEAVRKRPGMYIGSTGPRGLHHLVYEVVDNSIDEALAGHCTHIEVD 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
            + +G +TV D+GRGIPV+ H K   KS LE ++T LHAGGKF    Y++SGGLHGVG+S
Sbjct: 62  FNADGSVTVTDDGRGIPVDVHSK-TGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGVS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ + V V R  T ++Q++ RG+P+  L+ K     + GT + F PD  IF    
Sbjct: 121 VVNALSEWVEVQVLRDETQYTQRYQRGVPVDELQSKPSQGKQTGTSVQFLPDTTIFTTGI 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD A +    +  AYL+  V+   + ++    +    + E F + GG++ Y+      +
Sbjct: 181 EFDYATIANRLRELAYLNAGVRITLTDNRLDLIQLEEAKTESFCYEGGIREYIAYMNREK 240

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
             +  ++     E+    +  V         +  I  + N I T +GGTH  GL+  LTR
Sbjct: 241 QPLHEDVIYVSGERNNV-QIEVALQWCVDAYSDNILGFANNIRTIDGGTHLEGLKAVLTR 299

Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +  +A      +    ++  +++      ++SV + +PEF GQTKTKL + + +  V++
Sbjct: 300 TMNNFARKRNKLKENESNLGGENVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDS 359

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            + +    YL  +P  A  +LE  I+  +     R+ R+ V RK+ +    LPGKLADCS
Sbjct: 360 LVGEVLTEYLDFHPHIADAVLEKAIQAFKAAEAARRARDLVRRKSVLESSPLPGKLADCS 419

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
             I   +E+F+VEGDSAGGSAKQ R+R  QA+LPLRGKILN+      KI  N +I  L+
Sbjct: 420 TRIPAESEIFLVEGDSAGGSAKQGRDRRTQAILPLRGKILNIEKTDDSKIYKNNEIQSLI 479

Query: 518 QALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
            ALG   R +  +   LRY K+IIMTDADVDGAHI +LLLTFFY+   +L+EQ  +++  
Sbjct: 480 TALGLGIRGEDFDSSQLRYHKIIIMTDADVDGAHIRTLLLTFFYRYQRELVEQGFIYIAC 539

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+++ +G    Y +++   Q+ L EF  +      I RFKGLGEM+  QL  T M+  
Sbjct: 540 PPLYKVERGRNHYYCYNDRELQERLAEFPSNAN--YNIQRFKGLGEMMPEQLWNTTMNPE 597

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685
            R + +VE+           +    LMG +   R +FI+  A  ++  D+ 
Sbjct: 598 TRMIKQVEVED----AAQADNVFTVLMGDRVAPRREFIETNAPRLNLVDLD 644


>gi|291513912|emb|CBK63122.1| DNA gyrase subunit B [Alistipes shahii WAL 8301]
          Length = 652

 Score =  624 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 267/667 (40%), Positives = 384/667 (57%), Gaps = 27/667 (4%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
            +     +   + Y AS+I++LEGLE VR RP MYIG   EK LHHL  EV+DN++DE +
Sbjct: 2   STELENVKKQEEEYSASNIQVLEGLEAVRKRPAMYIGDIGEKGLHHLVYEVVDNSIDEAL 61

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AGY   I+V+++ +  +TV DNGRGIP + H K   KS LE++LT LHAGGKFD  +Y++
Sbjct: 62  AGYCTDIDVTINEDNSITVRDNGRGIPTDYHEK-EGKSALEVVLTVLHAGGKFDKGSYKV 120

Query: 151 SGGLHGVGISVVNALSDELHVTVA-RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           SGGLHGVG+S VNALS  L   +  R   I+ Q +S+G P S +E   +  + RGT ITF
Sbjct: 121 SGGLHGVGVSCVNALSTLLIAEIHSRDGKIYRQTYSKGAPTSQVEVVGECTD-RGTIITF 179

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +PD  IF     +    L    +  A+L+  +       +   ++ G   ++ FY   GL
Sbjct: 180 KPDGSIFTHTTEYKYDILANRLRELAFLNKGISLNLYDKR--PDEEGKTREDHFYSEEGL 237

Query: 270 KTYLQTKLENR-SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEG 327
           K +++     R + I  +I    TEK G     VE A+ + +   E   SY N I T EG
Sbjct: 238 KEFVKYLDATRGTPIVEQIIYLDTEKNGVP---VEVAMQYNDSFSENVHSYVNNINTIEG 294

Query: 328 GTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH +G R ALTR +KKYAE +    K    I  DD       ++SV ++EP+F GQTKT
Sbjct: 295 GTHLTGFRRALTRTLKKYAEDSGMLAKLKFDINGDDFREGLTAVVSVKVQEPQFEGQTKT 354

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAI 444
           KL + +    V+ AL      YL +NP +A  +++ VI   +     R  +  V RKT +
Sbjct: 355 KLGNDEVAAAVDQALASALGDYLEENPKDAKAIVQKVILAATARHAARHARELVQRKTVL 414

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADCS       E+F VEGDSAGG+AK  R+R+ QA++PLRGKILN+  A  
Sbjct: 415 SGAGLPGKLADCSSRDRSIAEIFFVEGDSAGGTAKSGRDRNFQAIMPLRGKILNIEKAQE 474

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASLLLTFF 559
            ++  N++I ++  ALG    ++        E LRY+K+IIMTDADVDG+HIA+L+LTFF
Sbjct: 475 HRMWENEEIKNMFTALGVTIGTEEDSKALNLEKLRYDKIIIMTDADVDGSHIATLMLTFF 534

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
           +++M +LIE  H+++ +PPL+ + +G +  Y   E+ + +I  EF K     + I R+KG
Sbjct: 535 FRKMKELIENGHVYIATPPLYLVKKGKQERYCWTEKERDEISAEFGK----GVHIQRYKG 590

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679
           LGEM A QL ET M+ + R L +V I     +  +     + LMG +   R +FI+  A 
Sbjct: 591 LGEMNAHQLWETTMNPDTRILRQVNIE----NAAEADRIFSMLMGDEVPPRREFIERNAH 646

Query: 680 FIDDVGT 686
           +  ++  
Sbjct: 647 YA-NIDA 652


>gi|330685298|gb|EGG96959.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU121]
          Length = 644

 Score =  624 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 254/657 (38%), Positives = 385/657 (58%), Gaps = 20/657 (3%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
              ++ + +DNY A  I++LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AG
Sbjct: 3   NTLSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 62

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           YA+ I V+++ + ++ V DNGRGIPV+   K   +  +E+ILT LHAGGKF    Y++SG
Sbjct: 63  YADEINVTIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 121

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG SVVNALS++L V V R +TI+ Q + +G+P   L++     +K GT I F+ D
Sbjct: 122 GLHGVGSSVVNALSEDLEVYVHRNDTIYHQAYKKGVPQFDLKEIGST-DKTGTAIRFKAD 180

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
             IF +   ++   L +  +  A+L+  ++   + +++  +      ++ +Y+ GG+K+Y
Sbjct: 181 SSIFTETTVYNYETLQQRIRELAFLNKGIQITLTDERDEDDI----RQDSYYYEGGIKSY 236

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHE 331
           ++   EN+  I  E       K       VE AI + +       +Y N I T EGGTHE
Sbjct: 237 VEMLNENKEPIHGEPIYIHQSKDDI---EVEIAIQYNKGYSTNLLTYANNIHTYEGGTHE 293

Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G + ALTR +  Y   ++  +        +D       I+S+   +P+F GQTKTKL +
Sbjct: 294 DGFKRALTRVLNSYGMNSKIIKEDKDRLSGEDTREGLTAIISIKHGDPQFEGQTKTKLGN 353

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448
            + ++ V+    + F+ +L +NP     ++E  I  S  R+  +K RE   RK+A+    
Sbjct: 354 SEVRQVVDKLFSEHFERFLYENPSVGRIIVEKGIMASRARVAAKKAREVTRRKSALEISS 413

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS      +E+F+VEGDSAGGS K  R+ S QA+LPLRGKILNV  A  ++I 
Sbjct: 414 LPGKLADCSSKNPEESEIFLVEGDSAGGSTKSGRDSSTQAILPLRGKILNVEKARLDRIL 473

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           NN +I  ++ A G     ++     RY K++IMTDADVDGAHI +LLLTFFY+ M  LIE
Sbjct: 474 NNNEIRSMITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 533

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             ++++  PPL+++TQG +  Y  ++    K+  E   +   K  I+R+KGLGEM A QL
Sbjct: 534 AGYVYIAQPPLYKLTQGKQKYYVFNDRELDKLKAEL--NPTPKWSIARYKGLGEMNADQL 591

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            ET M+   R++L+V +   +    D   +   LMG   + R +FI++ A +  ++ 
Sbjct: 592 WETTMNPEHRSMLQVTLEDAI----DADQTFEMLMGDIVENRRQFIEDNAVYA-NLD 643


>gi|331083523|ref|ZP_08332635.1| DNA gyrase subunit B [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330404216|gb|EGG83764.1| DNA gyrase subunit B [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 641

 Score =  624 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 263/654 (40%), Positives = 377/654 (57%), Gaps = 20/654 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           +      Y A  I+ILEGLE VR RPGMYIG T  + LHHL  E++DNA+DE +AGY + 
Sbjct: 2   STEIKTEYGADQIQILEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNAVDEALAGYCDT 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+V+++ +  +TV+DNGRGIPV  + K      +E++ T LHAGGKF    Y++SGGLHG
Sbjct: 62  IDVAINEDNSITVIDNGRGIPVGINQKA-GIPAVEVVFTILHAGGKFGGGGYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKI 215
           VG SVVNALS  L VT+  +  I+ Q++ RG  +  L+   +    K GT +TF PDP+I
Sbjct: 121 VGASVVNALSTWLEVTIFHEGKIYRQRYERGKTVYSLKIVGECEPEKTGTMVTFLPDPEI 180

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   FD   L    +  A+L+  +K      +E  EK        F++ GG+K ++Q 
Sbjct: 181 FEETI-FDFGTLKHRFREIAFLTKGLKIVARDKREEEEKEVT-----FHYEGGIKEFVQY 234

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             ++ + +  +I   +  K G     VE A+   +        + N I T EGGTH  G 
Sbjct: 235 LNKSNTALYDDILYFEGNKDGVM---VEVAMQHNDAYTENTYGFVNNITTPEGGTHIVGF 291

Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALT+   +YA   +  +    ++  +D+      I+SV I +P+F GQTK KL + +A
Sbjct: 292 RNALTKTFNEYARKNKLLKESEQNLTGEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEA 351

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           +  V+  + +  + YL QNP  A  ++E  ++ +      R+ +    RK+A+    LPG
Sbjct: 352 RGAVDGIVSNQLEIYLEQNPAVAKIIIEKSLLSQRARDAARKARELTRRKSALDGTSLPG 411

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC        E++IVEGDSAGGS K AR+R+ QA+LPLRGKILNV  A  +KI  N 
Sbjct: 412 KLADCVDKDPSKCEIYIVEGDSAGGSTKTARSRATQAILPLRGKILNVEKARLDKIYANA 471

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++ A G      +    LRY K+IIMTDADVDGAHIA+LLLTF Y+ M +LI+Q +
Sbjct: 472 EIKAMITAFGTGIHEDFDISKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGY 531

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           ++L  PPLF+I +  K  YA+ E+ +  IL E    G     I R+KGLGEM A QL ET
Sbjct: 532 VYLAKPPLFKIEKNKKIHYAYTEQEQADILAEIGMDG---CNIQRYKGLGEMDADQLWET 588

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   R L+RV +++D  S  +   +   LMG K + R +FI+E A +  ++ 
Sbjct: 589 TMDPESRILMRVVMDED--STSELDLTFTTLMGDKVEPRREFIEENAKYAKNLD 640


>gi|114704565|ref|ZP_01437473.1| DNA topoisomerase IV subunit B [Fulvimarina pelagi HTCC2506]
 gi|114539350|gb|EAU42470.1| DNA topoisomerase IV subunit B [Fulvimarina pelagi HTCC2506]
          Length = 675

 Score =  624 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 400/688 (58%), Positives = 517/688 (75%), Gaps = 17/688 (2%)

Query: 1   MTDD--SIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPV 58
           M+DD  S +    +PPQ      K  ++   P            +Y A+ I +LEGLEPV
Sbjct: 1   MSDDLFSGNAARKMPPQRTPKPRKAAETDPRPFGG---------DYTAADIEVLEGLEPV 51

Query: 59  RMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPV 118
           R RPGMY+GGTD KALHHLF+EVIDN+MDE  AG+AN IEVSLD +GF TV DNGRGIP+
Sbjct: 52  RRRPGMYVGGTDAKALHHLFAEVIDNSMDEATAGHANFIEVSLDTDGFCTVSDNGRGIPI 111

Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178
           + HP+F +KS LEIILTTLHAGGKFD+  YE SGGLHGVG+SVVNALS++L V VAR   
Sbjct: 112 DPHPRFKDKSALEIILTTLHAGGKFDSKVYETSGGLHGVGVSVVNALSEKLEVEVARNRK 171

Query: 179 IFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLS 238
           ++ Q+++RG  ++ LE   + +N+RGTR+ FRPDP+IFG+ A F+  RL +M +SKAYL 
Sbjct: 172 LYRQEYARGKAVTELETVGETQNRRGTRVRFRPDPQIFGEHARFEPTRLFRMARSKAYLF 231

Query: 239 GRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           G V+  W CD   +  +  IP +E F+FPGGLK YL   +  +  I+S+IF G+TEK  +
Sbjct: 232 GGVEIRWQCDPALLGTESPIPARETFHFPGGLKDYLDNSI-GKDRITSQIFAGRTEK-VS 289

Query: 298 HRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI 357
             G VEWA+AW  ++  I SYCNTI T EGGTHE+GLR  L RG+K +AEL+ NKRA  I
Sbjct: 290 GHGAVEWAVAWTPDDGSIRSYCNTIPTPEGGTHENGLRAVLLRGLKAFAELSGNKRASVI 349

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+M +A G+LSVFIREPEF GQTK +L + +AQR VE ++RD FD +L  +P +A +
Sbjct: 350 TGDDVMSTASGMLSVFIREPEFVGQTKDRLATSEAQRIVEQSIRDSFDIWLASSPQDAAR 409

Query: 418 LLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           L++WV++R++ERLRRR+++EV+RK+A RKLRLPGKLADCSQ+ A G ELFIVEGDSAGGS
Sbjct: 410 LIDWVLDRADERLRRRQEKEVSRKSATRKLRLPGKLADCSQSGAAGAELFIVEGDSAGGS 469

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AKQAR+R  QA+LPLRGKILNVASAG EK+  NQQ+ DL+QALGC T S+YR+ DLRYE+
Sbjct: 470 AKQARDRKTQAILPLRGKILNVASAGREKLGANQQLADLIQALGCGTGSKYRDADLRYER 529

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           VI+MTDADVDGAHIASLL+TFFY+EM +LI   HL+L  PPL+++TQG K+ YA D+ H+
Sbjct: 530 VIVMTDADVDGAHIASLLITFFYREMPELIRGGHLYLAVPPLYKLTQGGKTAYARDDRHR 589

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           ++++E   K GKGK+E+SRFKGLGEML  QLKET MD  KRTLL+V +++   +   T  
Sbjct: 590 ERLVEREFK-GKGKVEVSRFKGLGEMLPGQLKETTMDPKKRTLLQVVMDEAPEAG--TSG 646

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
           +++ LMG K D RF+FIQER++F+DD+ 
Sbjct: 647 AVDALMGNKPDLRFRFIQERSAFVDDLD 674


>gi|163814983|ref|ZP_02206370.1| hypothetical protein COPEUT_01136 [Coprococcus eutactus ATCC 27759]
 gi|158449666|gb|EDP26661.1| hypothetical protein COPEUT_01136 [Coprococcus eutactus ATCC 27759]
          Length = 639

 Score =  624 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 266/649 (40%), Positives = 376/649 (57%), Gaps = 19/649 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           DNY A  I++LEGLE VR RPGMYIG T    LHHL  E++DN++DE +AGY   I+V +
Sbjct: 4   DNYGAEQIQVLEGLEAVRKRPGMYIGSTSSTGLHHLVYEIVDNSVDEALAGYCTHIQVYI 63

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +  +TVVD+GRGIPV  H K      +E++ T LHAGGKF    Y++SGGLHGVG SV
Sbjct: 64  NEDNSITVVDDGRGIPVGIHKKQ-GIPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGASV 122

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKA 220
           VNALS  L V + R   I+ Q++ +G  +  L+          GT++TF PD  IF D  
Sbjct: 123 VNALSTWLEVEITRNGKIYKQRYEKGKVMYKLQVIGDAPEGVSGTKVTFLPDHTIFEDNV 182

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +D   L    +  A+L+  +K   +  +   EK        F++ GG+K ++     +R
Sbjct: 183 -YDYDILRNRLREMAFLTKGLKISLTDKRITPEKVRS-----FHYEGGIKEFVSYLNRHR 236

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
             + +E+   +  + G    +VE A+   +       S+ N I T EGGTH +G + A+T
Sbjct: 237 DPLYNEVIYCEGMRDGI---SVEVALQHNDSYNESTYSFVNNINTPEGGTHLTGFKSAIT 293

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           +    YA       ++  ++  DDL      I+S+ I +P+F GQTK KL + +A+  VE
Sbjct: 294 KVFNDYARKNNIIKEKDDNLSGDDLREGLAAIVSIKISDPQFEGQTKQKLGNSEARPAVE 353

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL-PGKLADC 456
           + + +   +YL QNP  A  ++         R+  RK R+V RK  +      PGKLADC
Sbjct: 354 SVVTEQLTYYLEQNPQIAKIIVNKAAVAQRARIAARKARDVARKANLSDNMALPGKLADC 413

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S       E++IVEGDSAGGSAK AR+RS QA+LPLRGKILNV  A  ++I  N++I  +
Sbjct: 414 SDKDPKNCEIYIVEGDSAGGSAKTARSRSTQAILPLRGKILNVEKARIDRILGNEEIKAM 473

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A G      +  E LRY K+IIMTDADVDGAHIA+LLLTFFY+ M DLI + H++L  
Sbjct: 474 ITAFGTGIHENFNIEKLRYNKIIIMTDADVDGAHIATLLLTFFYRFMPDLIRKGHVYLAQ 533

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+++ +  K  YA+ ++    IL+E  +    K  I R+KGLGEM A QL ET MD  
Sbjct: 534 PPLYKLEKNKKVWYAYSDDELNSILDEVGRDQNNK--IQRYKGLGEMDAEQLWETTMDPE 591

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +R LLRV I+ D  S  D   + N LMG K + R +FI+  A ++ ++ 
Sbjct: 592 RRILLRVAIDDDDESEIDM--TFNVLMGDKVEPRREFIETNAKYVKNLD 638


>gi|189464548|ref|ZP_03013333.1| hypothetical protein BACINT_00891 [Bacteroides intestinalis DSM
           17393]
 gi|189438338|gb|EDV07323.1| hypothetical protein BACINT_00891 [Bacteroides intestinalis DSM
           17393]
          Length = 653

 Score =  624 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 259/658 (39%), Positives = 384/658 (58%), Gaps = 22/658 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           S S NY A +I++LEGLE VR RP MYIG    K LHHL  EV+DN++DE +AGY + IE
Sbjct: 8   SNSGNYSAENIQVLEGLEAVRKRPAMYIGDISTKGLHHLVYEVVDNSIDEALAGYCDHIE 67

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+++ +  +TV DNGRGIPV+ H K   KS LE+++T LHAGGKFD  +Y++SGGLHGVG
Sbjct: 68  VTINEDNSITVQDNGRGIPVDFHEK-EQKSALEVVMTVLHAGGKFDKGSYKVSGGLHGVG 126

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +S VNALS  +   V R   I+ Q++  G PL P+++     +  GTR  F PD  IF D
Sbjct: 127 VSCVNALSTHMTTQVFRNGKIYQQEYECGHPLYPVKEIG-TSDITGTRQQFWPDNTIFTD 185

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              ++   L    +  AYL+  +K   +  +   E+    + E FY   GLK +++    
Sbjct: 186 TV-YNYEILATRMRELAYLNAGIKITLTDLRVKDEENNA-KMEIFYSEEGLKEFVRYIDS 243

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           +R  + +++    TEK+GT    VE AI +       I SY N I T EGGTH +G R A
Sbjct: 244 SREHLVNDVIYINTEKQGTP---VEVAIMYNTSYNENIHSYVNNINTIEGGTHLAGFRRA 300

Query: 338 LTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +KKYA+  +   K  + I  DD       ++S+ + EP+F GQTKTKL + +    
Sbjct: 301 LTRTLKKYADDNKMLEKAKVEIAGDDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVMGA 360

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLA 454
           V+ A+ +  ++YL ++P EA  +++ VI  ++ R+  RK RE  ++ + +    +PGKLA
Sbjct: 361 VDQAVGEALNYYLEEHPKEAKMVVDKVILAAQARVAARKARESVQRKSPMSGGGMPGKLA 420

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS       ELF+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A   K   + ++ 
Sbjct: 421 DCSSKDPEECELFLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKAMWHKAFESDEVN 480

Query: 515 DLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +++QALG R         +   + LRY+KVIIMTDADVDG+HI +L++T F++    +I 
Sbjct: 481 NIIQALGIRFGVNTEDSKEANIDKLRYKKVIIMTDADVDGSHIDTLIMTLFFRYFPQVIR 540

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             +L++ +PPL+   +G    Y   ++ +QK ++ +    +  +   R+KGLGEM   QL
Sbjct: 541 NGYLYIATPPLYLCKKGKVEEYCWTDQQRQKFIDTYGGGSESAVHTQRYKGLGEMNPEQL 600

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
             T M+   R L ++ I     +  +     + LMG     R +FI++ A++  ++  
Sbjct: 601 WSTTMNPENRMLKQISIE----NAAEVDYIFSMLMGEDVGPRREFIEKNATYA-NIDA 653


>gi|218264667|ref|ZP_03478430.1| hypothetical protein PRABACTJOHN_04139 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221854|gb|EEC94504.1| hypothetical protein PRABACTJOHN_04139 [Parabacteroides johnsonii
           DSM 18315]
          Length = 651

 Score =  623 bits (1607), Expect = e-176,   Method: Composition-based stats.
 Identities = 256/658 (38%), Positives = 385/658 (58%), Gaps = 21/658 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           ++ S  Y A SI++LEGLE VR RP MYIG T EK LHHL  EV+DN++DE +AG+   +
Sbjct: 6   KNTSTEYSADSIQVLEGLEAVRKRPSMYIGDTSEKGLHHLVYEVVDNSIDEALAGFCTQV 65

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +  ++V D+GRGIPV+ H K    S LE++LT LHAGGKFD  +Y++SGGLHGV
Sbjct: 66  DVVINEDNSISVTDDGRGIPVDIHEK-EGVSALEVVLTVLHAGGKFDKGSYKVSGGLHGV 124

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+S VNALS  L   V R   I  Q+FS G PL  +E   +  +  GT I F+PD  IF 
Sbjct: 125 GVSCVNALSTYLKAEVRRDGKIHMQEFSCGKPLHSIEVIGET-DVTGTTIMFKPDGSIFS 183

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               +    L    +  A+L+  +    +  + + E     + E F+   GLK +++   
Sbjct: 184 VT-EYKYEILATRLRELAFLNAGITLSLTDKRVVKEDG-NYKSEIFHSDEGLKEFVRYID 241

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRV 336
            ++  +  ++    TEK+G     VE A+ +    N  + SY N I T EGGTH +G R 
Sbjct: 242 RSKEQLIPDVIHIVTEKQGIP---VEVAMTYNTSFNESVFSYVNDINTIEGGTHLAGFRR 298

Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
            LTR +KKYA+ ++   K  + I  DD       ++S+ + EP+F GQTKTKL + +   
Sbjct: 299 GLTRTLKKYADDSKLLEKAKVEISGDDFREGLTAVISIKVAEPQFEGQTKTKLGNNEVTG 358

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
            V+ A+ +   +YL ++P EA  +++ VI      +  R+ +  V RK+ +    LPGKL
Sbjct: 359 AVDQAIGEALGYYLEEHPKEAKIIVDKVILAAQARQAARKARELVQRKSPMTGGGLPGKL 418

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS   A   ELF+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV  A   K+  +++I
Sbjct: 419 ADCSSKDAALCELFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMDHKVFESEEI 478

Query: 514 MDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            ++ +A+G    ++   +      LRY KVIIMTDADVDG+HIA+L+LTFF++ M  LIE
Sbjct: 479 QNIFRAMGVTIGTEEDPKELNLSKLRYHKVIIMTDADVDGSHIATLILTFFFRRMRALIE 538

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             +++L +PPL+   +G    Y   ++ +Q  ++++    + ++   R+KGLGEM   QL
Sbjct: 539 NGYVYLATPPLYLCKKGKVEEYCWTDQQRQAFIDKYGGGNENQVHTQRYKGLGEMNDHQL 598

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
            +T M+   RTL ++ I+    S  +     + LMG     R +FI+E A++  ++  
Sbjct: 599 WDTTMNPENRTLKQITID----SAAEADQIFSMLMGEDVGPRREFIEENATYA-NIDA 651


>gi|197302273|ref|ZP_03167332.1| hypothetical protein RUMLAC_01000 [Ruminococcus lactaris ATCC
           29176]
 gi|197298704|gb|EDY33245.1| hypothetical protein RUMLAC_01000 [Ruminococcus lactaris ATCC
           29176]
          Length = 644

 Score =  623 bits (1607), Expect = e-176,   Method: Composition-based stats.
 Identities = 255/647 (39%), Positives = 373/647 (57%), Gaps = 18/647 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y A  I+ILEGLE VR RPGMYIG T  + LHHL  E++DNA+DE +AGY + I V ++
Sbjct: 11  EYGADQIQILEGLEAVRKRPGMYIGSTSVRGLHHLVYEIVDNAVDEALAGYCDKIVVDIN 70

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV DNGRGIPV  + K      +E++ T LHAGGKF    Y++SGGLHGVG SVV
Sbjct: 71  KDNSITVTDNGRGIPVGINHKA-GLPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGASVV 129

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L V +  +  I+ Q++ RG     L  +        GT++TF PD +IF +   
Sbjct: 130 NALSEWLEVEICHEGKIYKQRYERGKVCYKLRIEGDCDPELTGTKVTFLPDKEIFEETV- 188

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L +  +  A+L+  +K      +E            F++ GG+K ++    ++++
Sbjct: 189 FDYNTLKQRFREMAFLTKGLKIQLRDLREEEVHEHT-----FHYEGGIKEFVTYLNKSKT 243

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            +  +I   +  K   +   VE A+   +        + N I T EGGTH +G R ALT+
Sbjct: 244 PLYDQIIYCEGMKDNVY---VEVAMQHNDSYNETTYGFVNNITTPEGGTHIAGFRSALTK 300

Query: 341 GIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
               YA+  +  K +  +  DD+      I+SV I +P+F GQTK KL + +A+  V+N 
Sbjct: 301 TFNDYAKKNKLLKESEQLSGDDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARGAVDNI 360

Query: 400 LRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
           +R   + +L QNP  A   ++  ++ +      R+ +    RK+A+  + LPGKLADCS 
Sbjct: 361 VRTQLEIFLEQNPSVAKLTIDKSMMAQRAREAARKARDLTRRKSALEGMSLPGKLADCSD 420

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV  A  +KI  N +I  ++ 
Sbjct: 421 KDPSKCEIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDKIYGNAEIKAMIT 480

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A G      +    LRY K+IIMTDADVDGAHI++LLLTF Y+ M DLI++ +++L  PP
Sbjct: 481 AFGTGIHDDFDISKLRYHKIIIMTDADVDGAHISTLLLTFMYRFMPDLIKEGYVYLAQPP 540

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+++ +  K  YA+ +E   +IL E  +    K  I R+KGLGEM A QL +T MD   R
Sbjct: 541 LYKLEKNKKVWYAYSDEELNQILTEVGRDNNNK--IQRYKGLGEMDAEQLWDTTMDPEHR 598

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            LLRV ++    +  +   +   LMG K + R +FI+E A ++ ++ 
Sbjct: 599 ILLRVTMDD--ETSSELDLTFTTLMGDKVEPRREFIEENAKYVQNLD 643


>gi|190710557|gb|ACE95109.1| gyrase subunit B [Bacillus thuringiensis serovar londrina]
 gi|190710571|gb|ACE95116.1| gyrase subunit B [Bacillus thuringiensis serovar kurstaki]
 gi|190710573|gb|ACE95117.1| gyrase subunit B [Bacillus thuringiensis serovar kurstaki]
 gi|190710579|gb|ACE95120.1| gyrase subunit B [Bacillus thuringiensis serovar canadensis]
 gi|190710583|gb|ACE95122.1| gyrase subunit B [Bacillus thuringiensis serovar jegathesan]
 gi|190710585|gb|ACE95123.1| gyrase subunit B [Bacillus thuringiensis serovar yosoo]
 gi|190710593|gb|ACE95127.1| gyrase subunit B [Bacillus thuringiensis serovar kurstaki]
 gi|190710599|gb|ACE95130.1| gyrase subunit B [Bacillus thuringiensis serovar yunnanensis]
 gi|190710603|gb|ACE95132.1| gyrase subunit B [Bacillus thuringiensis serovar galleriae]
 gi|190710607|gb|ACE95134.1| gyrase subunit B [Bacillus thuringiensis serovar kumamotoensis]
 gi|190710613|gb|ACE95137.1| gyrase subunit B [Bacillus thuringiensis serovar galleriae]
          Length = 627

 Score =  623 bits (1607), Expect = e-176,   Method: Composition-based stats.
 Identities = 265/644 (41%), Positives = 380/644 (59%), Gaps = 21/644 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R+  I  QK+ RGIP++ L+      ++ GT   F+PDP+IF +  
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +D   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E    +  K G     VE ++ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K++E   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF+I QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKIQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            R+LL+V +   +    +  ++   LMG K + R  FIQE A +
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKY 627


>gi|296328806|ref|ZP_06871320.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|296154141|gb|EFG94945.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 639

 Score =  623 bits (1607), Expect = e-176,   Method: Composition-based stats.
 Identities = 251/648 (38%), Positives = 375/648 (57%), Gaps = 20/648 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y+A +I +LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AGY + IEV + 
Sbjct: 6   SYEAQNITVLEGLEAVRKRPGMYIGTTSERGLHHLVWEIVDNSVDEALAGYCDKIEVKIL 65

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
               + V+DNGRGIP + HPK+  KS +EI+LT LHAGGKF+N  Y++SGGLHGVG+SVV
Sbjct: 66  PENIIEVMDNGRGIPTDIHPKY-GKSAMEIVLTILHAGGKFENDNYKVSGGLHGVGVSVV 124

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKAG 221
           NALS+ L V V +   +  QK+ RG P   ++        + GT + F+ D +IF     
Sbjct: 125 NALSEWLEVEVRKNGVVHYQKYHRGKPEENVKVIGSCDESEHGTIVRFKADGEIFETLI- 183

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L    +  AYL+  +    S  ++  +K        + F GG+  +L   ++  +
Sbjct: 184 YNYFTLSNRLKELAYLNKGLTIILSDLRKEEKKEET-----YKFDGGILDFLNEIVKEDT 238

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTR 340
            I  + F   +E+       V+    +   +N  I S+ N I T EGGTH  G R ALT+
Sbjct: 239 TIIEKPFYVSSEQDNV---GVDVTFTYTTSQNEVIYSFVNNINTHEGGTHVQGFRTALTK 295

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I    +       +   ++ +D+    VGI+S  I +P+F GQTK KL + +    V  
Sbjct: 296 VINDVGKAQGLLKDKDGKLMGNDIREGVVGIVSTKIPQPQFEGQTKGKLGNSEVSGIVNT 355

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCS 457
            +      +L  NP     ++E ++   + R   +K RE+  + + +    LPGKLADC+
Sbjct: 356 IVSSSLKIFLEDNPNITKIIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCT 415

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
              A   E+FIVEGDSAGGSAKQ R+R NQA+LPLRGKI+NV  AG  K   + +I  +V
Sbjct: 416 SKKAEECEIFIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMV 475

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A G      +    LRY K+I+MTDADVDGAHI +L+LTF Y+ M DLI + ++++  P
Sbjct: 476 TAFGTSIGETFDIAKLRYGKIILMTDADVDGAHIRTLILTFLYRYMKDLITEGNIYIACP 535

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL++++ G + +YA+++   + IL +  +  K K  I R+KGLGEM   QL ET M+ + 
Sbjct: 536 PLYKVSSGKQIIYAYNDLELKNILGQMNQDNK-KYTIQRYKGLGEMNPEQLWETTMNPDG 594

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           R LL+V I+    + ++     +KLMG K + R +FI+E A ++ ++ 
Sbjct: 595 RLLLKVSID----NAREADMLFDKLMGDKVEPRREFIEEHAEYVKNID 638


>gi|222100717|ref|YP_002535285.1| DNA gyrase subunit B [Thermotoga neapolitana DSM 4359]
 gi|221573107|gb|ACM23919.1| DNA gyrase subunit B [Thermotoga neapolitana DSM 4359]
          Length = 636

 Score =  623 bits (1607), Expect = e-176,   Method: Composition-based stats.
 Identities = 263/651 (40%), Positives = 377/651 (57%), Gaps = 24/651 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + Y A SI++L+GLEPVRMRPGMYIG T ++ LHHL  EV+DN++DE +AGY + I+V+L
Sbjct: 2   EKYSAESIKVLKGLEPVRMRPGMYIGSTGKRGLHHLVYEVVDNSVDESLAGYCDWIKVTL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G + V DNGRGIPV+ HP+   +S LE++ T LHAGGKF   +Y+ISGGLHGVG+SV
Sbjct: 62  HEDGSVEVEDNGRGIPVDVHPE-EGRSALEVVFTVLHAGGKFSKDSYKISGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+ L V V R   I+ Q++ RG P++ +E   +  +K GT + F+PDP IF +   
Sbjct: 121 VNALSEWLEVRVYRDGKIYRQRYERGKPVTLVEVIGET-DKHGTVVRFKPDPLIFSET-E 178

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L    +  A+L   +K  +       +K        F F GGLK +++     + 
Sbjct: 179 FDPDILEHRLREIAFLVPGLKIEFEDRINNEKKT-------FKFDGGLKEFVKYLNRGKK 231

Query: 282 LISSEIFTGKTEK----KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           ++   I+  +TEK           VE A  + +    EI S+ NTI T +GGTH +  + 
Sbjct: 232 VLHDVIYLKRTEKVKVKDKEDEVIVEIAFQYTDSYSEEILSFANTIKTVDGGTHVTAFKT 291

Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            LTR + +Y       K   S   DD+      ++SV+++ PEF GQTK+KL + + +  
Sbjct: 292 TLTRLMNEYGRKHNFLKNGDSFQGDDVREGLTAVISVYVKNPEFEGQTKSKLGNEEVKEA 351

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLA 454
           V  A+R+        +P     +L  ++   + R   R+ RE+  RK  ++   LPGKLA
Sbjct: 352 VNRAMREELKKIFDASPDLVRTILSKIMSTKQAREAARRAREMVRRKNVLQSTTLPGKLA 411

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS      TELFIVEGDSAGGSAKQAR+R  QAVLP+RGKILNV  +  +++  N+QI 
Sbjct: 412 DCSSTDRENTELFIVEGDSAGGSAKQARDRVFQAVLPIRGKILNVEKSSLDRLLKNEQIS 471

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           D++ A+G      +    LRY K+IIMTDAD+DGAHI +LLLT FY+ M  LIE   +++
Sbjct: 472 DIIVAVGTGIGDDFDINKLRYGKIIIMTDADIDGAHIRTLLLTLFYRYMKPLIEDGRIYI 531

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL+RI  G +  Y + +    +  + F+     K+EI R+KGLGEM   QL ET M+
Sbjct: 532 ALPPLYRIRVGKEDFYVYSDAELMEYRKMFEG---KKMEIQRYKGLGEMNPEQLWETTMN 588

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              R ++RV I       ++       LMG     R +FI+  A  + ++ 
Sbjct: 589 PETRKIIRVTIED----AEEADRLFEILMGNDPSSRREFIERHALKVKELD 635


>gi|304391681|ref|ZP_07373623.1| DNA topoisomerase IV, B subunit [Ahrensia sp. R2A130]
 gi|303295910|gb|EFL90268.1| DNA topoisomerase IV, B subunit [Ahrensia sp. R2A130]
          Length = 681

 Score =  623 bits (1607), Expect = e-176,   Method: Composition-based stats.
 Identities = 389/684 (56%), Positives = 502/684 (73%), Gaps = 9/684 (1%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           M+DD     ++ P  +Q +     K+G+    P         +Y+AS I +LEGLEPVR 
Sbjct: 1   MSDDLFSGGASTPATTQVTPSTPVKTGKAAAKPVKGKT--EGDYNASDIEVLEGLEPVRR 58

Query: 61  RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           RPGMYIGGTD KALHHLF+EVIDN+MDE +AG+A+ IEV LD  G+LT+ DNGRGIPV+ 
Sbjct: 59  RPGMYIGGTDSKALHHLFAEVIDNSMDEAVAGHASWIEVELDAEGYLTITDNGRGIPVDP 118

Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
           HPKF +KS LE+I+TTLHAGGKFD   YE SGGLHGVGISVVNALSD+L V VAR   ++
Sbjct: 119 HPKFKDKSALEVIMTTLHAGGKFDGKAYETSGGLHGVGISVVNALSDDLIVEVARNRELY 178

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
            Q FSRG  + P+E   +V+N+RGT++ F PD +IFG  A F    L KM +SKAYL G 
Sbjct: 179 RQSFSRGHAVGPVELVGEVQNRRGTKVRFHPDAQIFGKDARFKPLTLFKMARSKAYLFGG 238

Query: 241 VKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
           V+  WSCD   ++ K  + +K  F+FPGGLK +L  KL  +  ++   F G TEK+  H 
Sbjct: 239 VEIRWSCDPALVSGKDEVTDKAVFHFPGGLKDFLLEKLGKQMQVTDRPFAGTTEKRSGH- 297

Query: 300 GTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359
           G VEWAI W  ++  + SYCNTI T EGGTHE+GLR  L R +K YAEL  NK+   I +
Sbjct: 298 GAVEWAITWYGDDGFVNSYCNTIPTAEGGTHEAGLRTTLARSLKSYAELVGNKKGAMITT 357

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD+M SA  ++SVF+REPEF GQTK KL +++A R VE+A+RD FDH+L  +P ++ KLL
Sbjct: 358 DDVMTSAAAMISVFVREPEFVGQTKDKLATVEASRIVESAIRDAFDHWLAASPAQSAKLL 417

Query: 420 EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +WV++R+EER+RRR+++EVNRK A RKLRLPGKLADCS+N   GTE+FIVEGDSAGGSAK
Sbjct: 418 DWVVDRAEERMRRRQEKEVNRKNATRKLRLPGKLADCSKNAKGGTEIFIVEGDSAGGSAK 477

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
           QARNR +QA+LPLRGKILNVASA  +K+ ++QQI DL+QALGC T +++  +DLRY++VI
Sbjct: 478 QARNRKSQAILPLRGKILNVASATRDKMASSQQIQDLIQALGCGTGTRFSADDLRYDRVI 537

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599
           IMTDADVDGAHIASLL+TFF+QEM  +IE   L+L  PPL++++QG K++YA D+ HK +
Sbjct: 538 IMTDADVDGAHIASLLITFFHQEMPGIIETGSLYLAVPPLYKLSQGGKTMYARDDAHKDE 597

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
           +L+   K GK K+++ RFKGLGEM+ +QLKET MD  KRTLLRV I++ + +        
Sbjct: 598 LLKSEFKSGK-KVDLGRFKGLGEMMPAQLKETTMDPAKRTLLRVNIDEPIPAKDSIDR-- 654

Query: 660 NKLMGTKADERFKFIQERASFIDD 683
             LMGTK + RF FIQE ASF+D+
Sbjct: 655 --LMGTKPELRFNFIQENASFMDE 676


>gi|163745982|ref|ZP_02153341.1| DNA topoisomerase IV, B subunit [Oceanibulbus indolifex HEL-45]
 gi|161380727|gb|EDQ05137.1| DNA topoisomerase IV, B subunit [Oceanibulbus indolifex HEL-45]
          Length = 651

 Score =  623 bits (1607), Expect = e-176,   Method: Composition-based stats.
 Identities = 348/646 (53%), Positives = 448/646 (69%), Gaps = 10/646 (1%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +YDASSI +LEGLEPVR RPGMYIGGTDE+ALHHL +EV+DN+MDE +AG+AN IEV L+
Sbjct: 12  DYDASSIEVLEGLEPVRKRPGMYIGGTDERALHHLVAEVLDNSMDEAVAGHANRIEVELN 71

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +T+ DNGRGIP++ HPKFP+KS LE+IL TLHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 72  ADYSVTIRDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQTSGGLHGVGASVV 131

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALSD + V VAR   +F Q FSRGIP  P+EK     N+RGT +TF  D +IFG    F
Sbjct: 132 NALSDSMVVQVARNRELFEQSFSRGIPQGPVEKIGAAPNRRGTTVTFHADEQIFGA-HRF 190

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
             +RLLKM +SKAYL   V+  W   K   E    P +  F+FPGGL  YL+  L   + 
Sbjct: 191 KPSRLLKMVRSKAYLFSGVEIRW---KSEIEDGDTPMEATFHFPGGLADYLRETLGKATT 247

Query: 283 ISSEIFTGKTE--KKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALT 339
            +   F G  E  ++    G VEWAI W    +  I SYCNT+ T EGGTHE G   A+ 
Sbjct: 248 YAENPFAGTVEFQERFGVPGKVEWAINWTPARDGFIQSYCNTVPTPEGGTHEGGFWAAIL 307

Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +GI+ Y EL  N++A  I  DDL+     ++S FIREPEF GQTK +L + +A R VENA
Sbjct: 308 KGIRAYGELANNRKAKDITRDDLITGGCALVSCFIREPEFVGQTKDRLATTEAARLVENA 367

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
           +RD FD++L  +   A  +L++++ R+EER+RRR+++E  RK+A +KLRLPGKL DC+  
Sbjct: 368 VRDHFDNWLAADTKSAGAILDFLVLRAEERMRRRQEKETARKSATKKLRLPGKLTDCTSK 427

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
              GTELFIVEGDSAGGS K ARNR+ QA+LPL+GKILNV  A S KI  N +I DL +A
Sbjct: 428 TREGTELFIVEGDSAGGSGKGARNRNTQALLPLKGKILNVLGAASSKITTNAEISDLCEA 487

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           LG    +++  +DLRY+K+IIMTDADVDGAHIA+LL+TFF+ +M  LI+  HL+L  PPL
Sbjct: 488 LGVGMGTKFNLDDLRYDKIIIMTDADVDGAHIAALLMTFFFTQMRPLIDSGHLYLACPPL 547

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           FR+TQG K VY  DE  K   LE+    GKGKI++SRFKGLGEM A  LKET MD   R 
Sbjct: 548 FRLTQGAKRVYCLDEAEKNMWLEK-GLGGKGKIDVSRFKGLGEMDAKDLKETTMDPATRK 606

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           L+RV +++D+    +T D + +LMG K + RF++IQ+ A F++++ 
Sbjct: 607 LIRVTVDEDV--PGETGDLVERLMGKKPEMRFEYIQQNAQFVEELD 650


>gi|121602566|ref|YP_989184.1| DNA topoisomerase IV subunit B [Bartonella bacilliformis KC583]
 gi|4033401|sp|P94281|GYRB_BARBK RecName: Full=DNA gyrase subunit B
 gi|1766064|gb|AAC71079.1| GyrB [Bartonella bacilliformis]
 gi|120614743|gb|ABM45344.1| DNA topoisomerase IV, B subunit [Bartonella bacilliformis KC583]
          Length = 692

 Score =  623 bits (1606), Expect = e-176,   Method: Composition-based stats.
 Identities = 425/695 (61%), Positives = 530/695 (76%), Gaps = 14/695 (2%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEI-------PDSPAFANQSASDN--YDASSIRI 51
           M++D+ DLFS L         K              P  P  +     ++  Y+ASSIRI
Sbjct: 1   MSNDNKDLFSVLNHAQSRIDRKENTQYTSAHSEIVVPAVPLSSPHHHKEDSTYNASSIRI 60

Query: 52  LEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVD 111
           LEGLEPVR+RPGMYIGGTD KALHHLFSE+IDNAMDE +AGYA+LI+++LD N +LTV D
Sbjct: 61  LEGLEPVRLRPGMYIGGTDSKALHHLFSEIIDNAMDEAVAGYADLIDITLDSNNYLTVTD 120

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171
           NGRGIP+ENHP+ P+KSTLE+I+T LH+GGKFD   Y+ SGGLHGVGISVVNALSD++ V
Sbjct: 121 NGRGIPIENHPQIPDKSTLEVIMTHLHSGGKFDGKAYQTSGGLHGVGISVVNALSDDMEV 180

Query: 172 TVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMT 231
            VAR+  ++ Q+FSRGIP S LE+   V N+RGTR+ F PD +IFG+   FD  ++ K+ 
Sbjct: 181 EVARERKLYRQRFSRGIPQSGLEELGDVYNRRGTRVCFHPDSQIFGENTAFDPEKIYKIA 240

Query: 232 QSKAYLSGRVKTCWSCDKEI-AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
           +SKAYL   VK  W+CD     +   IPEK+ FYFP GLK YL   L+N+ L+++EIF+G
Sbjct: 241 RSKAYLFNGVKIRWNCDPAALKDAKNIPEKDVFYFPDGLKDYLSLSLKNKHLVTAEIFSG 300

Query: 291 KTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
           KT++  +  G+VEWAIAW   +  I SYCNTI T+EGGTHE+GLR  L RG+K YAEL  
Sbjct: 301 KTQQ-LSGHGSVEWAIAWHNGDAYIQSYCNTIPTEEGGTHETGLRQTLLRGLKAYAELIG 359

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
           NKRA  I SDD+M S V +LSVFI++P+F GQTK +L + +AQR VENA+RDPFDH+L  
Sbjct: 360 NKRASIITSDDVMASTVVMLSVFIKDPQFVGQTKDRLATTEAQRIVENAIRDPFDHWLAN 419

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           +P EATKLL WVIER+EERL+RR+ RE+NRKTA+RKLRLPGKLADCSQN A G ELFIVE
Sbjct: 420 SPHEATKLLNWVIERAEERLKRRQDREINRKTAVRKLRLPGKLADCSQNSAAGAELFIVE 479

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530
           GDSAGGSAKQARNR+NQA+LPLRGKILNVASA  EK+ ++Q I DL+ ALGC TRS+YRE
Sbjct: 480 GDSAGGSAKQARNRTNQAILPLRGKILNVASAAREKMSSSQTIADLILALGCGTRSKYRE 539

Query: 531 EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVY 590
           EDLRYE++IIMTDADVDGAHIASLL+TFF+QE+ DLI   HL+L  PPL+RI+QG K  Y
Sbjct: 540 EDLRYERIIIMTDADVDGAHIASLLITFFFQEIPDLIRAGHLYLAVPPLYRISQGGKVAY 599

Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
           A D+ HK ++L+  +  GKGKIEI RFKGLGEM A QLKET M+  KRTLLRV I  D  
Sbjct: 600 ARDDSHKDELLKT-EFTGKGKIEIGRFKGLGEMRAEQLKETTMNPKKRTLLRVSI--DTF 656

Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +++T++++  LMGTK +ERF+FIQE ++F +++ 
Sbjct: 657 EMQETKETVQNLMGTKPEERFRFIQESSTFANNLD 691


>gi|299133795|ref|ZP_07026989.1| DNA topoisomerase IV, B subunit [Afipia sp. 1NLS2]
 gi|298591631|gb|EFI51832.1| DNA topoisomerase IV, B subunit [Afipia sp. 1NLS2]
          Length = 689

 Score =  623 bits (1606), Expect = e-176,   Method: Composition-based stats.
 Identities = 381/681 (55%), Positives = 499/681 (73%), Gaps = 18/681 (2%)

Query: 4   DSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPG 63
            + DLF++   + +GS+           +P+    SA   Y A+ I +LEGLEPVR RPG
Sbjct: 17  AANDLFASGDRKPRGSA-----------APSAKPSSAEAGYTAADIEVLEGLEPVRRRPG 65

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIGGTDEKALHHLF+EVIDN+MDE +AG+A+ IEV L  +G+LTV+DNGRGIPV+ HPK
Sbjct: 66  MYIGGTDEKALHHLFAEVIDNSMDEALAGHASFIEVELGADGYLTVIDNGRGIPVDPHPK 125

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
           F NKS LEII+ TLHAGGKFD+  YE SGGLHGVG+SVVNALS +L V VAR   ++   
Sbjct: 126 FKNKSALEIIMCTLHAGGKFDSKVYETSGGLHGVGVSVVNALSSQLVVEVARNQKLYRMT 185

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           F RG P   LE+  KV N+RGT I F+PD +IFG KA F   RL KM +SKAYL G V+ 
Sbjct: 186 FERGKPKGKLEELGKVHNRRGTSIRFKPDTEIFGGKAVFKPQRLFKMARSKAYLFGGVEI 245

Query: 244 CWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
            W C  E+ +    +P ++ F+FPGGLK YL   + + +L+  +IF+GK+ + G H G  
Sbjct: 246 RWKCAPELLKGIEDVPAEDTFHFPGGLKDYLAAAIHSDTLVHPDIFSGKSGRNGAH-GAC 304

Query: 303 EWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISD 360
           EWA+AW  + +  ++SY NT+ T +GGTHE+G+R AL RGI+ +AE T   K+A SI S+
Sbjct: 305 EWAVAWTADADGFMSSYTNTVPTPDGGTHETGMRSALLRGIRDHAERTGQGKKASSITSE 364

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D+M+ A  +LSVF+REPEF GQTK +L + +AQR VE A++DPFDH+L  NP +A KLL+
Sbjct: 365 DVMVGAAVMLSVFVREPEFQGQTKDRLATAEAQRIVEQAVKDPFDHWLSGNPTQANKLLD 424

Query: 421 WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
           ++IER++ERLRRR ++E++RKTA++KLRLPGKLADC+     G+ELFIVEGDSAGGSAKQ
Sbjct: 425 FIIERADERLRRRAEKEISRKTAVKKLRLPGKLADCTNTATEGSELFIVEGDSAGGSAKQ 484

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           AR+R  QA+LPLRGKILNVASA  +K+  N Q+ DL+QA+GC     YRE+DLRY ++II
Sbjct: 485 ARDRKTQAILPLRGKILNVASATRDKMVANAQLSDLIQAIGCGIGINYREDDLRYSRIII 544

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKI 600
           MTDADVDGAHIASLL+TFFY++M  LI+  HL+L  PPL+R+T G+K++YA DE H+ ++
Sbjct: 545 MTDADVDGAHIASLLITFFYRQMPKLIDGGHLYLAVPPLYRMTHGSKTLYARDEAHRDEL 604

Query: 601 LEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660
           L++ + H   K+EI RFKGLGEM+ +QLKET MD  KRTLLRV +         T  S+ 
Sbjct: 605 LKK-EFHANAKVEIGRFKGLGEMMPNQLKETTMDPRKRTLLRVVL--ATEDRDSTATSVE 661

Query: 661 KLMGTKADERFKFIQERASFI 681
           +LMG+KA+ RF+FI E+A F 
Sbjct: 662 RLMGSKAEARFEFITEKAEFA 682


>gi|116252261|ref|YP_768099.1| DNA topoisomerase IV subunit B [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115256909|emb|CAK08003.1| putative DNA gyrase subunit B [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 700

 Score =  623 bits (1606), Expect = e-176,   Method: Composition-based stats.
 Identities = 445/702 (63%), Positives = 545/702 (77%), Gaps = 23/702 (3%)

Query: 3   DDSIDLFSTLP-PQSQGSSEKLKKSGEIPDSPAFANQ-----------------SASDNY 44
           DDS DLFS +P  + +  ++K     E P   A                     S SD+Y
Sbjct: 2   DDSNDLFSGMPLSEKREEAQKPAAPAERPPVTAALAAAAAPPAAGASARPAPAASNSDDY 61

Query: 45  DASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGN 104
            ASSIR+LEGLEPVRMRPGMYIGGTDEKALHHLF+EVIDNAMDE +AG+AN IEV LD  
Sbjct: 62  GASSIRVLEGLEPVRMRPGMYIGGTDEKALHHLFAEVIDNAMDEAVAGHANFIEVYLDLE 121

Query: 105 GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNA 164
           G+LTV DNGRGIPVENHP+ P KSTLE+I+T LHAGGKFD   YE SGGLHGVG+SVVNA
Sbjct: 122 GYLTVSDNGRGIPVENHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVSVVNA 181

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LSD+L V VAR   ++ Q+FSRG+P   LE+   V N+RGTR+ F PDP+IFGD   FDA
Sbjct: 182 LSDDLEVEVARNRKLYRQRFSRGLPQGGLEELGDVHNRRGTRVRFHPDPQIFGDHMKFDA 241

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCD-KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
           AR+ +M +SKAYL G V+  WSC+   + E   +P+K  F+FPGGLK YLQ  +     +
Sbjct: 242 ARVFRMARSKAYLFGGVEIRWSCEAGVLPEGSEVPDKAVFHFPGGLKDYLQATMGKEFTV 301

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIK 343
           + EIF GKTEK  +  G++EWAI W   +P++ SYCNTI T EGGTHE+GLR+ALT+G+K
Sbjct: 302 TREIFAGKTEK-TSGHGSMEWAITWYGGDPQVHSYCNTIPTPEGGTHEAGLRIALTKGLK 360

Query: 344 KYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDP 403
            YAELTQNKRA  I +DD+MISAVG+LSVFIREPEF GQTK KL +++AQR VENALRDP
Sbjct: 361 AYAELTQNKRAAQITTDDVMISAVGMLSVFIREPEFVGQTKDKLATVEAQRIVENALRDP 420

Query: 404 FDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHG 463
           FDHYL  NP E+ KLL+WVIER+EERLRRRK++EVNRK+A+RKLRLPGKLADCSQN A G
Sbjct: 421 FDHYLADNPNESAKLLDWVIERAEERLRRRKEKEVNRKSAVRKLRLPGKLADCSQNTAEG 480

Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523
            ELFIVEGDSAGGSAKQARNR+NQA+LPLRGKILNVASAG EK+  NQQ+ DL+QALGC 
Sbjct: 481 AELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLGANQQLADLIQALGCG 540

Query: 524 TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT 583
           TRS+YR+EDLRYE++I+MTDADVDGAHIASLL+TFFYQEM +L+   HLFL  PPL++IT
Sbjct: 541 TRSKYRDEDLRYERIIVMTDADVDGAHIASLLITFFYQEMPELVRGGHLFLAVPPLYKIT 600

Query: 584 QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRV 643
           QG+KS YA D+ H+ ++++   K GK K+EISRFKGLGEM+ +QLKET MD +KRTLL+V
Sbjct: 601 QGSKSAYARDDNHRAELMQTEFK-GKAKVEISRFKGLGEMMPAQLKETTMDPSKRTLLKV 659

Query: 644 EINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            I++     + T+ +++ LMGTK + RF+FIQ+RA+F +++ 
Sbjct: 660 LIDEV--DFEGTRSAVDDLMGTKPEARFRFIQDRAAFAENLD 699


>gi|158424137|ref|YP_001525429.1| DNA topoisomerase IV subunit B [Azorhizobium caulinodans ORS 571]
 gi|158331026|dbj|BAF88511.1| gram negative topoisomerase IV subunit B [Azorhizobium caulinodans
           ORS 571]
          Length = 672

 Score =  623 bits (1606), Expect = e-176,   Method: Composition-based stats.
 Identities = 393/684 (57%), Positives = 503/684 (73%), Gaps = 22/684 (3%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           M+ +S DLFS  PP          +  +    P  A+     +Y A+ I +LEGLEPVR 
Sbjct: 1   MS-NSDDLFSNPPP---------SRGRKTTVVPQMAS-----DYTAAHIEVLEGLEPVRR 45

Query: 61  RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           RPGMYIGGTD KALHHLF+EVIDN+MDE +AG+A  IEV L  +G LTV+DNGRGIPVE 
Sbjct: 46  RPGMYIGGTDAKALHHLFAEVIDNSMDEAVAGHATFIEVQLSNDGSLTVIDNGRGIPVEE 105

Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
           HPKFP KS LE+I+TTLH+GGKFD+  YE SGGLHGVG+SVVNALSD   V VAR  T++
Sbjct: 106 HPKFPGKSALEVIMTTLHSGGKFDSKVYETSGGLHGVGVSVVNALSDAFEVEVARNQTLY 165

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
            Q FSRG P   L++  ++ N+RGT+I F PDP IFG  A F+  R+ +M ++KAYL G 
Sbjct: 166 RQTFSRGTPQGKLKEVGRITNRRGTKIRFHPDPDIFGPSAKFEPGRVFRMARAKAYLFGG 225

Query: 241 VKTCWSCDKE-IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
           V+  WSCD E +A   G+PEK  F FPGGL+ YL   +E ++L+  +IF+G+ +K G H 
Sbjct: 226 VEIRWSCDPELLAGTTGVPEKMTFRFPGGLRDYLAADIEGQTLVHGDIFSGRVQKPGGH- 284

Query: 300 GTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISI 357
           G+ EWA+AW  + +  I+SYCNTI T +GGTHE+GLR  L +G++++ E T   KRA  I
Sbjct: 285 GSAEWAVAWIADGDGGISSYCNTIPTPDGGTHENGLRAVLLKGLREHGERTNQSKRAALI 344

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             +D+      +LSVF+REPEF GQTK +L + +A R VE  +RDPFDH+L  NP +AT+
Sbjct: 345 TGEDVTAGCAAMLSVFVREPEFQGQTKERLATAEAARIVEQTVRDPFDHWLAANPAQATR 404

Query: 418 LLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           L + V+ER+EERLRR++++E++RKTA+RKLRLPGKLADCS   A G+ELFIVEGDSAGGS
Sbjct: 405 LFDHVVERAEERLRRKQEKEISRKTAVRKLRLPGKLADCSNTEAAGSELFIVEGDSAGGS 464

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AKQAR+R  QAVLPLRGKILNVA+AG +K+  NQQ+ DL QALGC T S YRE DLRYEK
Sbjct: 465 AKQARDRRTQAVLPLRGKILNVANAGRDKLAQNQQLADLGQALGCGTLSHYREADLRYEK 524

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           VIIMTDADVDGAHIASLL+TFFY++M  L+++ HLFL  PPL+RITQG K++YA D+ HK
Sbjct: 525 VIIMTDADVDGAHIASLLVTFFYRQMPKLVDEGHLFLAVPPLYRITQGAKTLYARDDAHK 584

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           +K+L++ + +G+GK+EI RFKGLGEM+ +QLKET MD   RTLL+V I +   +   T D
Sbjct: 585 EKLLKK-EFNGRGKVEIGRFKGLGEMMPAQLKETTMDPKTRTLLQVSIEEAARAA--TDD 641

Query: 658 SINKLMGTKADERFKFIQERASFI 681
            + +LMG K + RF FI E A+F 
Sbjct: 642 IVERLMGNKPEARFAFISEHAAFA 665


>gi|313157284|gb|EFR56710.1| DNA gyrase, B subunit [Alistipes sp. HGB5]
          Length = 653

 Score =  623 bits (1606), Expect = e-176,   Method: Composition-based stats.
 Identities = 266/667 (39%), Positives = 383/667 (57%), Gaps = 26/667 (3%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
            +     +   + Y AS+I++LEGLE VR RP MYIG   EK LHHL  EV+DN++DE +
Sbjct: 2   STELENVKKQEEEYSASNIQVLEGLEAVRKRPAMYIGDIGEKGLHHLVYEVVDNSIDEAL 61

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AGY   I+V+++ +  +TV DNGRGIP + H K   KS LE++LT LHAGGKFD  +Y++
Sbjct: 62  AGYCTDIDVTINEDNSITVRDNGRGIPTDYHEK-EGKSALEVVLTVLHAGGKFDKGSYKV 120

Query: 151 SGGLHGVGISVVNALSDELHVTVA-RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           SGGLHGVG+S VNALS  L   +  R   I+ Q +S+G P S +E   +  + RGT ITF
Sbjct: 121 SGGLHGVGVSCVNALSTLLIAEIHSRDGKIYRQSYSKGAPTSQVEVVGECTD-RGTTITF 179

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +PD  IF     +    L    +  A+L+  +    +  +   E       + FY   GL
Sbjct: 180 KPDGSIFTLTTEYKYEILANRLRELAFLNKGIHLNLTDKRSKDENG-EYVHDNFYSEEGL 238

Query: 270 KTYLQTKLENR-SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEG 327
           K ++Q     R + I  +I    TEK G     VE A+ + +   E   SY N I T EG
Sbjct: 239 KEFVQYLDATRGTPIIDQIIYLDTEKNGVP---VEVAMQYNDSFSENVHSYVNNINTIEG 295

Query: 328 GTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH +G R ALTR +KKYAE +    K    I  DD       ++SV ++EP+F GQTKT
Sbjct: 296 GTHLTGFRRALTRTLKKYAEDSGMLSKLKFDINGDDFREGLTAVVSVKVQEPQFEGQTKT 355

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAI 444
           KL + +    V+ A+     HYL +NP +A  +++ VI   +     R  +  V RKT +
Sbjct: 356 KLGNDEVSAAVDQAMSSALGHYLEENPKDAKAIVQKVILAATARHAARHAREMVQRKTVL 415

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC+       E+F VEGDSAGG+AK  R+R+ QA++PLRGKILN+  A  
Sbjct: 416 SGAGLPGKLADCTSRDRSIAEIFFVEGDSAGGTAKSGRDRNFQAIMPLRGKILNIEKAQE 475

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASLLLTFF 559
            ++  N++I ++  ALG    ++        E LRY+K+IIMTDADVDG+HIA+L+LTFF
Sbjct: 476 HRMWENEEIKNMFTALGVTIGTEEDSKALNLEKLRYDKIIIMTDADVDGSHIATLMLTFF 535

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
           +++M +LIE  H+++ +PPL+ + +G +  Y   E+ +  I  EF K     + I R+KG
Sbjct: 536 FRKMKELIENGHVYIATPPLYLVKKGKQERYCWTEKERDTISAEFGK----GVHIQRYKG 591

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679
           LGEM A QL +T M+ + R L +V I     +  +     + LMG +   R +FI++ A 
Sbjct: 592 LGEMNAHQLWDTTMNPDTRILRQVNIE----NAAEADRIFSMLMGDEVPPRREFIEKNAH 647

Query: 680 FIDDVGT 686
           +  ++  
Sbjct: 648 YA-NIDA 653


>gi|187777362|ref|ZP_02993835.1| hypothetical protein CLOSPO_00918 [Clostridium sporogenes ATCC
           15579]
 gi|187774290|gb|EDU38092.1| hypothetical protein CLOSPO_00918 [Clostridium sporogenes ATCC
           15579]
          Length = 637

 Score =  623 bits (1606), Expect = e-176,   Method: Composition-based stats.
 Identities = 253/653 (38%), Positives = 375/653 (57%), Gaps = 22/653 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           +Q     YD S I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AG+   
Sbjct: 2   SQENKQVYDESQIQVLEGLEAVRKRPGMYIGSTSLRGLHHLVYEIVDNSIDEALAGFCTH 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV +  +  +TVVD+GRG+PV  H K   K  +E+I+T LHAGGKF    Y++SGGLHG
Sbjct: 62  IEVFIHKDNSITVVDDGRGMPVGMHSKV-KKPAVEVIMTILHAGGKFGGGGYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS+  +V V R   I+ QK+ RGIP + L+      +  GT+I F+PD +IF
Sbjct: 121 VGASVVNALSEHCNVEVRRDGHIWLQKYERGIPKTGLDIVGDTEDH-GTKIYFKPDVEIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   F+   L +  +  A+L+  +K   + ++         ++E F++ GGL++++   
Sbjct: 180 DEL-EFEYDTLAQRLRELAFLNKGIKISLTDER-------YDKQEMFHYEGGLRSFVLYL 231

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
             N+  +  +       K G     VE A+ + +     I S+ N I T EGGTH +G +
Sbjct: 232 NRNKEKLHQQPIYVDKNKDG---CIVEIAMQYNDGYAENIFSFANNIDTIEGGTHLAGFK 288

Query: 336 VALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR I  YA      +    ++  DD+      ++SV + +P+F GQTKTKL + + +
Sbjct: 289 SALTRAINDYARKFNYLKDTDKNLSGDDVREGLTAVISVKLTDPQFEGQTKTKLGNSEVR 348

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
             V+  + +    +L +NP     ++E  +  S  R   ++ RE   RK+ +    LPGK
Sbjct: 349 GIVDTIVGESIGSFLEENPNVGKIIIEKGLSASRAREAAKRARELTRRKSVLESTSLPGK 408

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS       E+++VEGDSAGGSAKQ RNR  QA+LPL+GKI+NV     +KI  + +
Sbjct: 409 LADCSSKDPSLCEIYLVEGDSAGGSAKQGRNREFQAILPLKGKIMNVEKQRLDKILASDE 468

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++ A G     ++  E +RY ++IIMTDADVDGAHI +LLLTFFY+ M +L+E+ H+
Sbjct: 469 IRAMITAFGAGIGKEFNLEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMKELVEEGHV 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL+RI +  K +Y + ++   + L E          I R+KGLGEM   QL ET 
Sbjct: 529 YIAQPPLYRIYKAKKELYVYSDKELDEALLELGGKDTNT-NIQRYKGLGEMDPEQLWETT 587

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           M+   RTLL+V I   +       +    LMGTK + R  FI+  A  + ++ 
Sbjct: 588 MNPEHRTLLQVTIEDAM----AADEIFTILMGTKVEPRRDFIENNADKVVNLD 636


>gi|260463892|ref|ZP_05812088.1| DNA topoisomerase IV, B subunit [Mesorhizobium opportunistum
           WSM2075]
 gi|259030267|gb|EEW31547.1| DNA topoisomerase IV, B subunit [Mesorhizobium opportunistum
           WSM2075]
          Length = 685

 Score =  623 bits (1606), Expect = e-176,   Method: Composition-based stats.
 Identities = 413/684 (60%), Positives = 526/684 (76%), Gaps = 10/684 (1%)

Query: 3   DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAF---ANQSASDNYDASSIRILEGLEPVR 59
           DD+ DLF  L  Q Q      + +  +  + A    A++  S+ Y A+ I +LEGLEPVR
Sbjct: 2   DDNNDLFGDLDKQPQPVRTPARPADPLVQAAAKRPAASRDGSEGYSAADIEVLEGLEPVR 61

Query: 60  MRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119
            RPGMYIGGTD+KA+HHLF+EVIDN+MDE +AG+A  I+V L  +G+L+V DNGRGIPV+
Sbjct: 62  RRPGMYIGGTDDKAMHHLFAEVIDNSMDEAVAGHATFIDVELSADGYLSVTDNGRGIPVD 121

Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179
            HPKF  K  LE+I+TTLH+GGKFD+  YE SGGLHGVG+SVVNALSD L V VAR   +
Sbjct: 122 PHPKF-KKPALEVIMTTLHSGGKFDSKVYETSGGLHGVGVSVVNALSDHLEVEVARGRQL 180

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
           + Q+FSRG+P+S LE   +V N+RGT+I F PD +IFG  A F+ ARL +MT+SKAYL G
Sbjct: 181 YRQRFSRGVPVSGLEHLGEVHNRRGTKIRFHPDEQIFGKGAAFEPARLYRMTRSKAYLFG 240

Query: 240 RVKTCWSCDKE-IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH 298
            V+  W+CD   I EK   P K EF+FPGGLK YL+  L +   ++ EIF GK++K+G H
Sbjct: 241 GVEIRWTCDPSLIKEKDQTPAKAEFHFPGGLKDYLKASLGDDFQVTREIFAGKSDKQGGH 300

Query: 299 RGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII 358
            G++EWA+ W   +  + SYCNTI T EGGTHE+G R  LTRG++ YAEL  NKRA  + 
Sbjct: 301 -GSLEWAVTWFGGDGFVNSYCNTIPTGEGGTHEAGFRNVLTRGLRAYAELVGNKRASIVT 359

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
           S+D+MISA G+LSVFIREPEF GQTK +L +++A R VE A+RDPFDH+L  NP EA+KL
Sbjct: 360 SEDVMISAAGMLSVFIREPEFVGQTKDRLATIEAIRIVETAIRDPFDHWLADNPQEASKL 419

Query: 419 LEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
           LEWVI R++ER+RRR+++EV+RK+A+RKLRLPGKLADC+QN A G ELFIVEGDSAGGSA
Sbjct: 420 LEWVIARADERVRRRQEKEVSRKSAVRKLRLPGKLADCTQNAAAGAELFIVEGDSAGGSA 479

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538
           KQAR+R++QAVLPLRGKILNVASAG++K+  NQQI DL+QALGC TRS+YR+EDLRY++V
Sbjct: 480 KQARDRASQAVLPLRGKILNVASAGNDKLAANQQISDLIQALGCGTRSKYRDEDLRYDRV 539

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQ 598
           IIMTDADVDGAHIASLL+TFFYQEM  L+   HL+L  PPL+ I QG K  YA D+ HK 
Sbjct: 540 IIMTDADVDGAHIASLLITFFYQEMPALVRGGHLYLAVPPLYSIRQGGKVAYARDDAHKD 599

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           ++L   +  G+GK+E+ RFKGLGEM+A+QLKET MD  KRTLLRV++N+  ++   T+D 
Sbjct: 600 ELL-RTEFTGRGKVELGRFKGLGEMMAAQLKETTMDPRKRTLLRVDVNEIDSA---TKDR 655

Query: 659 INKLMGTKADERFKFIQERASFID 682
           +++LMGTK + RF+FIQERA F +
Sbjct: 656 VDELMGTKPEARFRFIQERAEFAE 679


>gi|19705416|ref|NP_602911.1| DNA gyrase subunit B [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|19713409|gb|AAL94210.1| DNA gyrase subunit B [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
          Length = 639

 Score =  623 bits (1606), Expect = e-176,   Method: Composition-based stats.
 Identities = 251/648 (38%), Positives = 375/648 (57%), Gaps = 20/648 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y+A +I +LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AGY + IEV + 
Sbjct: 6   SYEAQNITVLEGLEAVRKRPGMYIGTTSERGLHHLVWEIVDNSVDEALAGYCDKIEVKIL 65

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
               + V+DNGRGIP + HPK+  KS +EI+LT LHAGGKF+N  Y++SGGLHGVG+SVV
Sbjct: 66  PENIIEVMDNGRGIPTDIHPKY-GKSAMEIVLTILHAGGKFENDNYKVSGGLHGVGVSVV 124

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKAG 221
           NALS+ L V V +   +  QK+ RG P   ++        + GT + F+ D +IF     
Sbjct: 125 NALSEWLEVEVRKNGVVHYQKYHRGKPEEDVKVIGSCDESEHGTIVRFKADGEIFETLI- 183

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L    +  AYL+  +    S  ++  +K        + F GG+  +L   ++  +
Sbjct: 184 YNYFTLSNRLKELAYLNKGLTIILSDLRKEEKKEET-----YKFDGGILDFLNEIVKEDT 238

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTR 340
            I  + F   +E+       V+    +   +N  I S+ N I T EGGTH  G R ALT+
Sbjct: 239 TIIEKPFYVSSEQDNV---GVDVTFTYTTSQNEVIYSFVNNINTHEGGTHVQGFRTALTK 295

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I    +       +   ++ +D+    VGI+S  I +P+F GQTK KL + +    V  
Sbjct: 296 VINDVGKAQGLLKDKDGKLMGNDIREGVVGIVSTKIPQPQFEGQTKGKLGNSEVSGIVNT 355

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCS 457
            +      +L  NP     ++E ++   + R   +K RE+  + + +    LPGKLADC+
Sbjct: 356 IVSSSLKIFLEDNPNITKIIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCT 415

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
              A   E+FIVEGDSAGGSAKQ R+R NQA+LPLRGKI+NV  AG  K   + +I  +V
Sbjct: 416 SKKAEECEIFIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMV 475

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A G      +    LRY K+I+MTDADVDGAHI +L+LTF Y+ M DLI + ++++  P
Sbjct: 476 TAFGTSIGETFDIAKLRYGKIILMTDADVDGAHIRTLILTFLYRYMKDLITEGNIYIACP 535

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL++++ G + +YA+++   + IL +  +  K K  I R+KGLGEM   QL ET M+ + 
Sbjct: 536 PLYKVSSGKQIIYAYNDLELKNILGQMNQDNK-KYTIQRYKGLGEMNPEQLWETTMNPDG 594

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           R LL+V I+    + ++     +KLMG K + R +FI+E A ++ ++ 
Sbjct: 595 RLLLKVSID----NAREADMLFDKLMGDKVEPRREFIEEHAEYVKNID 638


>gi|169335585|ref|ZP_02862778.1| hypothetical protein ANASTE_02000 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258323|gb|EDS72289.1| hypothetical protein ANASTE_02000 [Anaerofustis stercorihominis DSM
           17244]
          Length = 636

 Score =  623 bits (1606), Expect = e-176,   Method: Composition-based stats.
 Identities = 254/651 (39%), Positives = 374/651 (57%), Gaps = 22/651 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
             + NYDAS I++LEGLE VR RPGMYIG T EK LHHL  E++DN++DE +AG+   I 
Sbjct: 3   KQNSNYDASKIKVLEGLEAVRKRPGMYIGSTGEKGLHHLVYEIVDNSVDEALAGFCKNIV 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++     +TV D+GRGIP   + K+  KS +EI LT LHAGGKFD+ TY++SGGLHGVG
Sbjct: 63  VTIGEGDTITVEDDGRGIPTGMNEKY-KKSAVEIALTMLHAGGKFDSGTYKVSGGLHGVG 121

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+ L V V +   ++ QK+ RG P++ LE   K +   GT + F+PD +IF +
Sbjct: 122 VSVVNALSEHLTVNVYQNGQVYEQKYERGKPITGLEVVGKTKR-TGTTVFFKPDGEIFSE 180

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L    +  A+L+  +       +E  +     ++E F++ GG+  ++     
Sbjct: 181 LV-FNYDTLKHRIRELAFLNKGLNITLKDTREGKD-----QEESFHYEGGIIEFVDYANR 234

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            +  ++ E+   + E        +E A+ +       I S+ N I T EGG H +G + A
Sbjct: 235 GKEKLTPEVIYFEKESDV---CMLEVAMQFSTSYSESIYSFANNINTVEGGMHVNGFKTA 291

Query: 338 LTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR I  YA      +    ++  DD+      ++SV + +PEF GQTKTKL + + +  
Sbjct: 292 LTRSINAYARKYNILKDNEENLSGDDIREGLCVVISVKLADPEFEGQTKTKLGNPEVRGY 351

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454
           V+  + D    YL ++P  A  ++E  +     R   RK ++ V RK+ +    LPGKLA
Sbjct: 352 VDTTVGDNISSYLEEHPPVAKIIVEKALTAQRARKAARKAKDLVRRKSVLESTALPGKLA 411

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +      E++IVEGDSAGGSAK  RN   QA+LPLRGKILNV  A  ++I N   I 
Sbjct: 412 DCREKDPSKCEIYIVEGDSAGGSAKLGRNSKTQAILPLRGKILNVEKARLDRILNTDTIR 471

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++ A G     ++  E  RY K++IMTDADVDGAHI +LLLTFFY+ M  LI+  ++++
Sbjct: 472 SMITAFGTGISEEFNIEKARYHKIVIMTDADVDGAHIRTLLLTFFYRYMRGLIDAGYVYI 531

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL+++ +  K  Y + +E  ++ L+E    G+ KI + R+KGLGEM   QL +T M+
Sbjct: 532 AQPPLYKLEKQKKVWYLYSDEQLEEKLQEI---GRDKIGLQRYKGLGEMNGEQLWDTTMN 588

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              RTLL+V I+          +  + LMG +   R  FI E A  + ++ 
Sbjct: 589 PENRTLLQVSIDD----AAYADEIFSILMGDQVQPRKDFITENARKVQNLD 635


>gi|319783876|ref|YP_004143352.1| DNA topoisomerase IV, subunit beta [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317169764|gb|ADV13302.1| DNA topoisomerase IV, B subunit [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 685

 Score =  623 bits (1606), Expect = e-176,   Method: Composition-based stats.
 Identities = 409/684 (59%), Positives = 517/684 (75%), Gaps = 10/684 (1%)

Query: 3   DDSIDLFSTLPPQSQG---SSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVR 59
           DDS DLF  +  Q Q    ++               + +  S+ Y A+ I +LEGLEPVR
Sbjct: 2   DDSNDLFGNMDKQPQPVRTAARPADPLVVQATKRPASTKDGSEGYSAADIEVLEGLEPVR 61

Query: 60  MRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119
            RPGMYIGGTD+KA+HHLF+EVIDN+MDE +AG+A  I+V L  +G+L V DNGRGIP++
Sbjct: 62  RRPGMYIGGTDDKAMHHLFAEVIDNSMDEAVAGHATFIDVELSADGYLAVTDNGRGIPID 121

Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179
            HPKF  K  LE+I+TTLH+GGKFD+  YE SGGLHGVG+SVVNALSD L V VAR   +
Sbjct: 122 PHPKF-KKPALEVIMTTLHSGGKFDSKVYETSGGLHGVGVSVVNALSDHLEVEVARGRQL 180

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
           + QKFSRG+P++ LE+  +V N+RGT+I F PD +IFG  A F+ ARL +MT+SKAYL G
Sbjct: 181 YRQKFSRGVPVTGLEQLGEVHNRRGTKIRFHPDEQIFGKGAAFEPARLYRMTRSKAYLFG 240

Query: 240 RVKTCWSCDKE-IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH 298
            V+  W+CD   I EK   P K EF+FPGGLK YL+  L +   ++ EIF GK+EK+G H
Sbjct: 241 GVEIRWTCDPSLIKEKDQTPAKAEFHFPGGLKDYLKASLGDDFQVTREIFAGKSEKQGGH 300

Query: 299 RGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII 358
            G++EWA+ W   +  I SYCNTI T EGGTHE+G R  LTRG++ YA+L  NKRA  + 
Sbjct: 301 -GSLEWAVTWFGGDGFINSYCNTIPTGEGGTHEAGFRNVLTRGLRAYADLVGNKRASIVT 359

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
           S+D+MISA G+LSVFIREPEF GQTK +L +++A R VE A+RDPFDH+L  NP EA+KL
Sbjct: 360 SEDVMISAAGMLSVFIREPEFVGQTKDRLATIEAIRIVETAIRDPFDHWLADNPQEASKL 419

Query: 419 LEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
           LEWVI R++ER+RRR+++EV+RK+A+RKLRLPGKLADC+QN A G ELFIVEGDSAGGSA
Sbjct: 420 LEWVIARADERVRRRQEKEVSRKSAVRKLRLPGKLADCTQNAAAGAELFIVEGDSAGGSA 479

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538
           KQAR+R++QAVLPLRGKILNVASAG++K+  NQQI DL+QALGC TRS+YR+EDLRY++V
Sbjct: 480 KQARDRASQAVLPLRGKILNVASAGNDKLAANQQISDLIQALGCGTRSKYRDEDLRYDRV 539

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQ 598
           IIMTDADVDGAHIASLL+TFFYQEM  L+   HL+L  PPL+ I QG K  YA D+ HK 
Sbjct: 540 IIMTDADVDGAHIASLLITFFYQEMPALVRGGHLYLAVPPLYSIRQGGKVAYARDDAHKD 599

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           ++L   +  G+GK+E+ RFKGLGEM+A+QLKET MD  KRTLLR+++     + KD    
Sbjct: 600 ELL-RTEFTGRGKVELGRFKGLGEMMAAQLKETTMDPRKRTLLRIDVIDAETATKDA--- 655

Query: 659 INKLMGTKADERFKFIQERASFID 682
           ++ LMGTK + RF+FIQERA F +
Sbjct: 656 VDALMGTKPEARFRFIQERAEFAE 679


>gi|170760652|ref|YP_001785341.1| DNA gyrase subunit B [Clostridium botulinum A3 str. Loch Maree]
 gi|169407641|gb|ACA56052.1| DNA gyrase, B subunit [Clostridium botulinum A3 str. Loch Maree]
          Length = 637

 Score =  623 bits (1606), Expect = e-176,   Method: Composition-based stats.
 Identities = 254/653 (38%), Positives = 377/653 (57%), Gaps = 22/653 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           +Q     YD S I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AG+   
Sbjct: 2   SQENKQVYDESQIQVLEGLEAVRKRPGMYIGSTSLRGLHHLVYEIVDNSIDEALAGFCTH 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV +  +  +TVVD+GRG+PV  H K   K  +E+I+T LHAGGKF    Y++SGGLHG
Sbjct: 62  IEVFIHKDNSITVVDDGRGMPVGMHSKV-KKPAVEVIMTILHAGGKFGGGGYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS++  V V R+  I+ QKF RGI  + L+      +  GT+I F+PD +IF
Sbjct: 121 VGASVVNALSEQCEVEVRREGHIWKQKFERGITKTGLDIVGDTEDH-GTKIYFKPDIEIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   F+   L +  +  A+L+  +K   + ++         +KE F++ GGL++++   
Sbjct: 180 DEL-EFEYDTLAQRLRELAFLNKGIKISLTDER-------YDKKEMFHYEGGLRSFVLYL 231

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
             N+  +  +       K G     VE A+ + +     I S+ N I T EGGTH +G +
Sbjct: 232 NRNKEKLHQQPIYVDKNKDG---CIVEIAMQYNDGYAENIFSFANNIDTIEGGTHLAGFK 288

Query: 336 VALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR I  YA      + I  ++  DD+      ++SV + +P+F GQTKTKL + + +
Sbjct: 289 SALTRAINDYARKFNYLKDIDKNLSGDDVREGLTAVISVKLTDPQFEGQTKTKLGNSEVR 348

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
             V+  + +    +L +NP     ++E  +  S  R   ++ RE   RK+ +    LPGK
Sbjct: 349 GIVDTIVGESIGSFLEENPNVGKIIIEKGLSASRAREAAKRARELTRRKSVLESTSLPGK 408

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS       E+++VEGDSAGGSAKQ RNR  QA+LPL+GKI+NV     +KI  + +
Sbjct: 409 LADCSSKDPSLCEIYLVEGDSAGGSAKQGRNREFQAILPLKGKIMNVEKQRLDKILASDE 468

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++ A G     ++  + +RY ++IIMTDADVDGAHI +LLLTFFY+ M +LIE+ H+
Sbjct: 469 IRAMITAFGAGIGKEFDIDKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMKELIEEGHV 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL+RI +  K +Y + +    + L E          I R+KGLGEM   QL +T 
Sbjct: 529 YIAQPPLYRIFKAKKEIYVYSDPELDEALLELGGKDTNT-NIQRYKGLGEMNPEQLWDTT 587

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           M+   RTLL+V I   +       +    LMGTK + R +FI++ A  + ++ 
Sbjct: 588 MNPEHRTLLQVTIEDAM----AADEIFTILMGTKVEPRREFIEDNADKVVNLD 636


>gi|33862190|ref|NP_893751.1| DNA gyrase subunit B [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
 gi|33634408|emb|CAE20093.1| DNA gyrase, subunit B [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
          Length = 655

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 264/657 (40%), Positives = 384/657 (58%), Gaps = 15/657 (2%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           S    +   S++Y A  I++LEGLEPVR RPGMYIG T  + LHHL  EV+DN++DE +A
Sbjct: 2   SEEKRSNKISNDYGADQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+ + IE+ L  +G   + DNGRGIP + HP+   KS LE +LT LHAGGKF +  Y++S
Sbjct: 62  GHCDHIEIVLKEDGSALISDNGRGIPTDIHPR-TGKSALETVLTVLHAGGKFGSGGYKVS 120

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITF 209
           GGLHGVGISVVNALS+ +HVTV+R    F+Q+F +GI    L+ ++  K   ++GT I F
Sbjct: 121 GGLHGVGISVVNALSEWVHVTVSRDGYEFNQRFEKGIAKGELKSQKQQKKPFRKGTTICF 180

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +PD  IF D   FD A L    +  AYL+G VK  +  +++        E E + + GG+
Sbjct: 181 KPDTSIFTDGIKFDYALLSSRLRELAYLNGGVKIIFRDERQNLSDGSFKE-EIYLYDGGI 239

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGT 329
           K Y++   + +  I SE+    ++K   +             +  I  + N I T +GGT
Sbjct: 240 KEYVEYINKEKESIHSEVIYVDSQKDNVY-VEAALQWCSDVYSDNILGFANNIRTIDGGT 298

Query: 330 HESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  GL+  LTR     A+    ++ +  ++  +++      +LSV + EPEF GQTKTKL
Sbjct: 299 HIDGLKTVLTRTFNAIAKKRGKRKEVDKNLSGENIREGLTVVLSVKVPEPEFEGQTKTKL 358

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
            + + +  V++ + +    Y+  NP     +LE  I+        ++ R+ V RK+ +  
Sbjct: 359 GNTEVRGIVDSLIGESLIKYMEFNPNVFDLILEKAIQSFNAAEAAKRARDLVRRKSVLES 418

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADCS     G E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILN+      K
Sbjct: 419 STLPGKLADCSSRDPSGAEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAK 478

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           I  N +I  L+ ALG   + +    + LRY +V+IMTDADVDGAHI +LLLTFFY+   D
Sbjct: 479 IYKNTEIQSLITALGLGIKGEEFNVNSLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRD 538

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           L+E+  +++  PPL+++ +G    Y ++E   ++ +E+F +  K    I RFKGLGEM+ 
Sbjct: 539 LVEKGFIYIACPPLYKVERGKNHKYCYNENQLKQTIEDFGE--KANYNIQRFKGLGEMMP 596

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            QL +T M+   R + RVEI   L    +     N LMG K   R +FI+  ++ +D
Sbjct: 597 KQLWDTTMNPQTRMMKRVEIEDAL----EADRIFNILMGDKVAPRREFIETHSANLD 649


>gi|190891866|ref|YP_001978408.1| DNA gyrase protein, B subunit [Rhizobium etli CIAT 652]
 gi|190697145|gb|ACE91230.1| DNA gyrase protein, B subunit [Rhizobium etli CIAT 652]
          Length = 693

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 446/695 (64%), Positives = 540/695 (77%), Gaps = 16/695 (2%)

Query: 3   DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQ-----------SASDNYDASSIRI 51
           DDS DLFS +P   +    +   +     +PA A             S SD+Y ASSIR+
Sbjct: 2   DDSNDLFSGMPLSEKREEAQKPAAAAERPAPAAATAPAASARPAPAGSNSDDYGASSIRV 61

Query: 52  LEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVD 111
           LEGLEPVRMRPGMYIGGTDEKALHHLF+EVIDNAMDE +AG+AN IEV LD  G+LTV D
Sbjct: 62  LEGLEPVRMRPGMYIGGTDEKALHHLFAEVIDNAMDEAVAGHANFIEVHLDLQGYLTVTD 121

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171
           NGRGIPVENHP+ P KSTLE+I+T LHAGGKFD   YE SGGLHGVG+SVVNALSD L V
Sbjct: 122 NGRGIPVENHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVSVVNALSDFLEV 181

Query: 172 TVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMT 231
            VAR   ++ Q+FSRG+P   LE+   V N+RGTR+ F PD +IFG+   FDAAR+ +M 
Sbjct: 182 EVARNRKLYRQRFSRGLPQGGLEELGDVHNRRGTRVRFHPDAQIFGEHMKFDAARVFRMA 241

Query: 232 QSKAYLSGRVKTCWSCD-KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
           +SKAYL G V+  WSCD   + E   +P+K  F+FPGGLK YLQ  +     ++ EIF G
Sbjct: 242 RSKAYLFGGVEIRWSCDAGVLPEGSEVPDKAVFHFPGGLKDYLQATMGKEFTVTREIFAG 301

Query: 291 KTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
           KTEK  +  G++EWAI W   +P++ SYCNTI T EGGTHE+GLR+ALT+G+K YAELTQ
Sbjct: 302 KTEK-ASGHGSMEWAITWYGGDPQVHSYCNTIPTPEGGTHEAGLRIALTKGLKAYAELTQ 360

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
           NKRA  I +DD+MISAVG+LSVFIREPEF GQTK KL +++AQR VENALRDPFDHYL  
Sbjct: 361 NKRAAQITTDDVMISAVGMLSVFIREPEFVGQTKDKLATVEAQRIVENALRDPFDHYLAD 420

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           NP EA KLL+WVIER+EERLRRRK++EVNRKTA+RKLRLPGKLADCSQN A G ELFIVE
Sbjct: 421 NPNEAAKLLDWVIERAEERLRRRKEKEVNRKTAVRKLRLPGKLADCSQNTAEGAELFIVE 480

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530
           GDSAGGSAKQARNR+NQA+LPLRGKILNVASAG EK   NQQ+ DL+QALGC TR++YR+
Sbjct: 481 GDSAGGSAKQARNRANQAILPLRGKILNVASAGREKFGANQQLADLIQALGCGTRAKYRQ 540

Query: 531 EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVY 590
           EDLRYE++I+MTDADVDGAHIASLL+TFFYQEM +L+   HLFL  PPL++ITQG KS Y
Sbjct: 541 EDLRYERIIVMTDADVDGAHIASLLITFFYQEMPELVRGGHLFLAVPPLYKITQGAKSAY 600

Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
           A D+ H+ ++++   K GK K+EISRFKGLGEM+ +QLKET MD +KRTLLRV I++   
Sbjct: 601 ARDDNHRAELMQTEFK-GKAKVEISRFKGLGEMMPAQLKETTMDPSKRTLLRVLIDEV-- 657

Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             + T+ +++ LMGTK + RF+FIQERA+F +++ 
Sbjct: 658 DFEGTRSAVDDLMGTKPEARFRFIQERAAFAENLD 692


>gi|119355886|ref|YP_910530.1| DNA gyrase subunit B [Chlorobium phaeobacteroides DSM 266]
 gi|119353235|gb|ABL64106.1| DNA gyrase subunit B [Chlorobium phaeobacteroides DSM 266]
          Length = 643

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 261/655 (39%), Positives = 375/655 (57%), Gaps = 25/655 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
             A   Y AS+I+IL+G+E VR RP MYIG    + LHHL  E++DN++DE + G+   I
Sbjct: 6   PQAPSPYIASNIQILDGIEHVRKRPAMYIGDIHTRGLHHLIYEIVDNSIDETLGGFNEYI 65

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            VSL+ +G +TV+D+GRGIPV+ HP+   KS LE+++T + AGGKFD  +Y++SGGLHGV
Sbjct: 66  FVSLNPDGSVTVIDHGRGIPVDIHPQ-KQKSALELVMTVIGAGGKFDKGSYKVSGGLHGV 124

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS+   V V R    + Q+F RG+P   + +   + +++GT+ TF+PD  IF 
Sbjct: 125 GASVVNALSEWCEVEVYRDGKAYFQRFERGVPQGNVREIG-LSDQKGTKTTFKPDNLIFK 183

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F    ++   +  A+L+  +                  +E F++ GGLK +++   
Sbjct: 184 T-TEFRKDIIIDRMRELAFLNKNLSITVQD--------ADGAQEIFHYEGGLKEFVRFTD 234

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            NR  +  E      E+  T    VE A+ + +     + SY N I T EGGTH +G R 
Sbjct: 235 INRLSLIKEPIYFIGERDTTI---VEIALQYNDSYQENVFSYVNNINTHEGGTHVTGFRK 291

Query: 337 ALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  YA+     + +   +  DD       ++SV + EP+F GQTKTKL + + Q 
Sbjct: 292 ALTRTLNLYAQKNDLLKNLKLSLTGDDFKEGLTAVISVKVEEPQFEGQTKTKLGNSETQS 351

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            VE+ + +    +   NP     ++E V   +  R   RK +E   RK+ +    LPGKL
Sbjct: 352 IVESIVNELLSEFAESNPNVIKMIIEKVKGAAMSREAARKAKELTRRKSVLESSGLPGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS N     EL+IVEGDSAGGSAKQ R+RS QA+LPL+GKILNV  A   K+  N++I
Sbjct: 412 ADCSINDPEHCELYIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKARLHKMLENEEI 471

Query: 514 MDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             ++ ALG     +    E LRY K+IIMTDADVDGAHI +LLLTFF++ M  LIE   +
Sbjct: 472 KTIILALGTSFGEEEFSPEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYMRSLIEAGKV 531

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKK--HGKGKIEISRFKGLGEMLASQLKE 630
           ++  PPL+ +  G    YA D+E +  I +  KK   GK  I I R+KGLGEM   QL  
Sbjct: 532 YIAQPPLYLVKSGKDQQYAWDDEERNSITDTLKKMQKGKANIHIQRYKGLGEMNPEQLWS 591

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T MD   R+LL+V +     + ++     + LMG K + R +FI++ A ++  + 
Sbjct: 592 TTMDPAHRSLLQVSVE----NAREADQIFSTLMGDKVEPRREFIEKNARYVRRLD 642


>gi|168183732|ref|ZP_02618396.1| DNA gyrase, B subunit [Clostridium botulinum Bf]
 gi|237793326|ref|YP_002860878.1| DNA gyrase subunit B [Clostridium botulinum Ba4 str. 657]
 gi|182673147|gb|EDT85108.1| DNA gyrase, B subunit [Clostridium botulinum Bf]
 gi|229263377|gb|ACQ54410.1| DNA gyrase, B subunit [Clostridium botulinum Ba4 str. 657]
          Length = 637

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 253/653 (38%), Positives = 373/653 (57%), Gaps = 22/653 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            Q     YD S I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AG+   
Sbjct: 2   PQENKQVYDESQIQVLEGLEAVRKRPGMYIGSTSLRGLHHLVYEIVDNSIDEALAGFCTH 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV +  +  +TVVD+GRG+PV  H K   K  +E+I+T LHAGGKF    Y++SGGLHG
Sbjct: 62  IEVFIHKDNSITVVDDGRGMPVGMHSKV-KKPAVEVIMTILHAGGKFGGGGYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS+  +V V R   I+ QK+ RGIP + L+         GT+I F+PD +IF
Sbjct: 121 VGASVVNALSEHCNVEVRRDGHIWLQKYERGIPKTGLDIVGDTEKH-GTKIYFKPDVEIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   F+   L +  +  A+L+  +K   + ++         ++E F++ GGL++++   
Sbjct: 180 DEL-EFEYDTLAQRLRELAFLNKGIKISLTDER-------YDKQEMFHYEGGLRSFVLYL 231

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
             N+  +  +       K G     VE A+ + +     I S+ N I T EGGTH +G +
Sbjct: 232 NRNKEKLHQQPIYVDKNKDG---CIVEIAMQYNDGYAENIFSFANNIDTIEGGTHLAGFK 288

Query: 336 VALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR I  YA      +    ++  DD+      ++SV + +P+F GQTKTKL + + +
Sbjct: 289 SALTRAINDYARKFNYLKDTDKNLSGDDVREGLTAVISVKLTDPQFEGQTKTKLGNSEVR 348

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
             V+  + +    +L +NP     ++E  +  S  R   ++ RE   RK+ +    LPGK
Sbjct: 349 GIVDTIVGESIGSFLEENPNVGKIIIEKGLSASRAREAAKRARELTRRKSVLESTSLPGK 408

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS       E+++VEGDSAGGSAKQ RNR  QA+LPL+GKI+NV     +KI  + +
Sbjct: 409 LADCSSKDPSLCEIYLVEGDSAGGSAKQGRNREFQAILPLKGKIMNVEKQRLDKILASDE 468

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++ A G     ++  E +RY ++IIMTDADVDGAHI +LLLTFFY+ M +L+E+ H+
Sbjct: 469 IRAMITAFGAGIGKEFNLEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMKELVEEGHV 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL+RI +  K +Y + ++   + L E          I R+KGLGEM   QL ET 
Sbjct: 529 YIAQPPLYRIYKAKKELYVYSDKELDEALLELGGKDTNT-NIQRYKGLGEMDPEQLWETT 587

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           M+   RTLL+V I   +       +    LMGTK + R  FI+  A  + ++ 
Sbjct: 588 MNPEHRTLLQVTIEDAM----AADEIFTILMGTKVEPRRDFIENNADKVVNLD 636


>gi|34763292|ref|ZP_00144250.1| DNA gyrase subunit B [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|27887040|gb|EAA24153.1| DNA gyrase subunit B [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
          Length = 639

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 257/648 (39%), Positives = 377/648 (58%), Gaps = 20/648 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y+A +I +LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AGY + IEV + 
Sbjct: 6   SYEAQNITVLEGLEAVRKRPGMYIGTTSERGLHHLVWEIVDNSVDEALAGYCDKIEVKIL 65

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
               + VVDNGRGIP + HPK+  KS LEI+LT LHAGGKF+N  Y++SGGLHGVG+SVV
Sbjct: 66  PENIIEVVDNGRGIPTDIHPKY-GKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGVSVV 124

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAG 221
           NALS+ L V V +  TI  QK+ RG P   ++       N+ GT + F+ D +IF     
Sbjct: 125 NALSEWLEVEVRKNGTIHYQKYHRGKPEEDVKIVGSCDINEHGTIVRFKADGEIFETLI- 183

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L    +  AYL+  +    S  ++  +K  I     + F GG+  +L   ++  +
Sbjct: 184 YNYFTLSNRLKELAYLNKGLTIILSDLRKEEKKEEI-----YKFDGGILDFLNEIVKEDT 238

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTR 340
            I  + F   +E+       V+    +   +N  I S+ N I T EGGTH  G R ALT+
Sbjct: 239 TIIEKPFYVSSEQDNV---GVDVTFTYTTSQNEVIYSFVNNINTHEGGTHVQGFRTALTK 295

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I    +       +   ++ +D+    VGI+S  I +P+F GQTK KL + +    V  
Sbjct: 296 VINDVGKAQGLLKDKDGKLMGNDIREGVVGIVSTKIPQPQFEGQTKGKLGNSEVSGIVNT 355

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCS 457
            + +    +L  NP     ++E ++   + R   +K RE+  + + +    LPGKLADC+
Sbjct: 356 IVSNSLKIFLEDNPNITKIIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCT 415

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
              A   E+FIVEGDSAGGSAKQ R+R NQA+LPLRGKI+NV  AG  K   + +I  +V
Sbjct: 416 SKKAEECEIFIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMV 475

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A G      +    LRY K+I+MTDADVDGAHI +L+LTF Y+ M DLI   ++++  P
Sbjct: 476 TAFGTSIGETFDISKLRYGKIILMTDADVDGAHIRTLILTFLYRYMIDLIYAGNVYIACP 535

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+++  G + VYA+++   + +L +  +  K K  I R+KGLGEM   QL ET M+ + 
Sbjct: 536 PLYKVASGKQIVYAYNDLELKNVLGQMNQDNK-KYTIQRYKGLGEMNPEQLWETTMNPDG 594

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           R LL+V I+    + ++     +KLMG K + R +FI+E A ++ ++ 
Sbjct: 595 RLLLKVSID----NAREADMLFDKLMGDKVEPRREFIEEHAEYVKNID 638


>gi|293370455|ref|ZP_06617008.1| DNA gyrase, B subunit [Bacteroides ovatus SD CMC 3f]
 gi|292634447|gb|EFF52983.1| DNA gyrase, B subunit [Bacteroides ovatus SD CMC 3f]
          Length = 652

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 258/653 (39%), Positives = 380/653 (58%), Gaps = 21/653 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y A SI++LEGLE VR RP MYIG    K LHHL  E++DN++DE +A Y + IEV+++
Sbjct: 12  SYSADSIQVLEGLEAVRKRPAMYIGDISVKGLHHLVYEIVDNSIDEALASYCDHIEVTIN 71

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV DNGRGIPV+ H K   KS LE+ +T LHAGGKFD  +Y++SGGLHGVG+S V
Sbjct: 72  EDNSITVQDNGRGIPVDYHEK-EKKSALEVAMTVLHAGGKFDKGSYKVSGGLHGVGMSCV 130

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  +   V R   I+ Q++  G PL  +++     +  GTR  F PD  IF +   +
Sbjct: 131 NALSTHMTTQVFRNGKIYQQEYEIGKPLYSVKEVG-TADITGTRQQFWPDGTIFTETV-Y 188

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L    +  AYL+  ++   +  + +  + G  + E+FY   GL+ +++    +R  
Sbjct: 189 DYKILASRLRELAYLNAGLRISLTD-RRVVNEDGSFKSEQFYSEEGLREFVRFIESSREH 247

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           + +++    +EK+G     +E AI +     E   SY N I T EGGTH +G R ALTR 
Sbjct: 248 LINDVIYLNSEKQGIP---IEVAIMYNTGFSENVHSYVNNINTIEGGTHLAGFRRALTRT 304

Query: 342 IKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +KKYAE ++   K  + I  DD       ++SV + EP+F GQTKTKL + +    V+ A
Sbjct: 305 LKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVMGAVDQA 364

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458
           + +   +YL ++P EA  +++ VI  +  R   RK RE+ ++ + +    LPGKLADCS 
Sbjct: 365 VGEVLAYYLEEHPKEAKTIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGKLADCSD 424

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 ELF+VEGDSAGG+AKQ RNR  QA+LPLRGKILNV  A   K   + +I ++  
Sbjct: 425 KDPSKCELFLVEGDSAGGTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESDEIRNIYT 484

Query: 519 ALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
           ALG    +         + LRY K+IIMTDADVDG+HI +L++TFF++ M  +I+  +L+
Sbjct: 485 ALGVTIGTDEDSKEANIQKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQVIQNGYLY 544

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           + +PPL+   +G    Y   +  +QK ++ +    +  I   R+KGLGEM A QL ET M
Sbjct: 545 IATPPLYLCKKGKVEEYCWTDAQRQKFIDTYGGGSENAIHTQRYKGLGEMNAQQLWETTM 604

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           D   R L +V I+    +  +     + LMG     R +FI+E A++  ++  
Sbjct: 605 DPENRMLKQVNID----NAAEADYIFSMLMGEDVGPRREFIEENATYA-NIDA 652


>gi|70725006|ref|YP_251920.1| DNA gyrase subunit B [Staphylococcus haemolyticus JCSC1435]
 gi|68445730|dbj|BAE03314.1| DNA gyrase (topoisomerase II) subunit B [Staphylococcus
           haemolyticus JCSC1435]
          Length = 644

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 254/657 (38%), Positives = 385/657 (58%), Gaps = 20/657 (3%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
              ++ + +DNY A  I++LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AG
Sbjct: 3   NTLSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 62

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           YAN IEV ++ + ++ V DNGRGIPV+   K   +  +E+ILT LHAGGKF    Y++SG
Sbjct: 63  YANQIEVIIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 121

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG SVVNALS++L V V R +TI+ Q + +G+P   L++     +K GT I F+ D
Sbjct: 122 GLHGVGSSVVNALSEDLEVYVHRNDTIYHQAYKKGVPQFDLKEVGST-DKTGTVIRFKAD 180

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            +IF +   ++   L K  +  A+L+  +      ++E  E+     ++ +++ GG+K+Y
Sbjct: 181 SEIFTETTVYNYETLQKRIRELAFLNKGISITLRDEREDVEQ----REDTYHYEGGIKSY 236

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++   EN+  I  E       K       +E A+ +       + SY N I T EGGTHE
Sbjct: 237 VELLNENKEPIHEEPIYIHQTKDDV---EIEIAMQYNSGYATNLLSYANNIHTYEGGTHE 293

Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G + ALTR +  Y   ++  +        +D       ++S+   +P+F GQTKTKL +
Sbjct: 294 DGFKRALTRILNSYGTQSKIIKDDKERLSGEDTREGLTAVVSIKHGDPQFEGQTKTKLGN 353

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448
            + ++ V+    + F+ +L ++P  A  ++E  I  S  R+  +K RE   RK+A+    
Sbjct: 354 SEVRQIVDRLFAEHFERFLYEHPNVARIVVEKGIMASRARVAAKKAREVTRRKSALEISS 413

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS      +E+F+VEGDSAGGS K+ R+   QA+LPLRGKILNV  A  ++I 
Sbjct: 414 LPGKLADCSSKKPEESEIFLVEGDSAGGSTKEGRDSKTQAILPLRGKILNVEKARLDRIL 473

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           NN +I  ++ A G     ++     RY K++IMTDADVDGAHI +LLLTFFY+ M  LIE
Sbjct: 474 NNNEIRQMITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 533

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             ++++  PPL+++ QG +  Y  ++    K+  E       K +ISR+KGLGEM A QL
Sbjct: 534 AGYVYIAQPPLYKLAQGKQKYYVFNDRELDKLKSELSPT--PKWQISRYKGLGEMNADQL 591

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            ET M+   R +L+V++   +    +   +   LMG   + R +FI++ A +  ++ 
Sbjct: 592 WETTMNPENRMMLQVKLEDAI----EADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 643


>gi|319952084|ref|YP_004163351.1| DNA gyrase subunit b [Cellulophaga algicola DSM 14237]
 gi|319420744|gb|ADV47853.1| DNA gyrase subunit B [Cellulophaga algicola DSM 14237]
          Length = 653

 Score =  622 bits (1604), Expect = e-176,   Method: Composition-based stats.
 Identities = 259/666 (38%), Positives = 381/666 (57%), Gaps = 24/666 (3%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
              A  ++   +NY A SI+ LEG+E VRMRP MYIG    + LHHL  EV+DN++DE +
Sbjct: 2   SEEANKDEQKKNNYSADSIQALEGMEHVRMRPSMYIGDVGVRGLHHLVYEVVDNSIDEAM 61

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
            G+ + I V+++ +  +TV DNGRGIPV+ H K    S L++++T + AGGKFD  +Y++
Sbjct: 62  GGHCDTITVAINEDNSITVRDNGRGIPVDIHKK-EGVSALQVVMTKIGAGGKFDKDSYKV 120

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+S VNALS +L  TV R  TI+ Q++ +G  L P++   +    RGT +TF 
Sbjct: 121 SGGLHGVGVSCVNALSKDLKATVFRNGTIYEQEYQKGKALYPVKSIGET-EIRGTEVTFY 179

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGL 269
           PD  IF     F+   L    +  +YL+  V    +  + +  +      +E FY   GL
Sbjct: 180 PDETIFTQTVEFNYDTLANRMRELSYLNKGVSITMTDKRQKDKDTPSGFHEERFYSEEGL 239

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGG 328
           K +++    NR  +   + + + EK G     VE A+ +     E    Y N I T EGG
Sbjct: 240 KEFIKFLDGNREPLIKGVISMEGEKNGIP---VEVAMVYNTSYTENLHSYVNNINTHEGG 296

Query: 329 THESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH SG R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F GQTKTK
Sbjct: 297 THLSGFRRGLTSTLKKYADASGMLEKLKFEIQGDDFREGLTAIISVKVGEPQFEGQTKTK 356

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIR 445
           L + +    V  A+ +    YL +NP +A  +++ V+  +  R    K RE+  RKT + 
Sbjct: 357 LGNREVSAAVSQAVSEMLSDYLEENPEDAKIIVQKVVLAATARHAATKAREMVQRKTVMS 416

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKL+DCS       E+F+VEGDSAGG+AKQ R+R  QA+LPLRGKILNV  A   
Sbjct: 417 IGGLPGKLSDCSDQDPVNCEVFLVEGDSAGGTAKQGRDRMFQAILPLRGKILNVEKAMRH 476

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           ++  N++I ++  ALG    ++   +      LRY KV+IM DADVDG+HI +L+LTFF+
Sbjct: 477 RVFENEEIKNIYTALGVSIGTEEDSQALNLEKLRYHKVVIMCDADVDGSHIETLILTFFF 536

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           + M +L+E  H+++ +PPL+ + +G K  YA +++ + +I E F     G + I R+KGL
Sbjct: 537 RYMRELVEAGHVYIATPPLYLVKKGAKKRYAWNDKERDEIAESF----NGSVGIQRYKGL 592

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GEM A QL +T M+   RTL +V I        +T    + LMG +   R +FI++ A +
Sbjct: 593 GEMNAEQLWDTTMNPEFRTLRQVVIENAT----ETDRVFSMLMGDEVPPRREFIEKNAVY 648

Query: 681 IDDVGT 686
             ++  
Sbjct: 649 A-NIDA 653


>gi|227538317|ref|ZP_03968366.1| DNA topoisomerase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241832|gb|EEI91847.1| DNA topoisomerase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 652

 Score =  622 bits (1604), Expect = e-176,   Method: Composition-based stats.
 Identities = 260/662 (39%), Positives = 383/662 (57%), Gaps = 21/662 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              +  +  Y A +I++LEGLE VR RP MYIG T  K LHHL  EV+DN++DE +AGY 
Sbjct: 2   SEEKKNTSTYSADNIQVLEGLEAVRKRPSMYIGDTGVKGLHHLVYEVVDNSIDEAVAGYC 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I V++     ++V DNGRGIP   + K  NKS LE+++T LHAGGKFD  TY++SGGL
Sbjct: 62  DDILVTIHEGNSISVQDNGRGIPTGINKK-ENKSALELVMTVLHAGGKFDKDTYKVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+S VNALS  L   V R   IF Q++ +G P   ++   +   + GT +TF PDP+
Sbjct: 121 HGVGVSCVNALSTLLIAEVHRDGQIFKQEYEKGKPKYDVKAIGE-SERTGTTVTFFPDPE 179

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     ++   L    +  A+L+  ++     ++EI +      K+ F+  GGL+ +++
Sbjct: 180 IFTMTTVYNYDTLSNRLRELAFLNKGIRLTIVDEREILDDG-SFRKDVFFSEGGLQEFVK 238

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESG 333
               NR  +  +    +  K+G     VE A+ + +   E   SY N I T EGG+H +G
Sbjct: 239 FLDGNRQSLIPDPIYVEGIKQGVP---VELALQYNDTYSENVHSYVNNINTIEGGSHVAG 295

Query: 334 LRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R  LTR +KKYAE +   + + +    DD       ++SV + EP+F GQTKTKL + +
Sbjct: 296 FRRGLTRTLKKYAEDSGLLKNLKVEIAGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNE 355

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLP 450
               V+ A+ +    YL +NP EA  +++  VI        R+ +  V RKT +    LP
Sbjct: 356 VMGAVDVAVGEILSTYLEENPREAKIIVQKVVIAAQARAAARKAREMVQRKTVMGGSGLP 415

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS N  H  E+F VEGDSAGG+AKQ R+R  QA++PLRGKILNV  A   KI  N
Sbjct: 416 GKLADCSDNDPHKCEIFFVEGDSAGGTAKQGRDRKFQAIMPLRGKILNVEKAMEHKIYEN 475

Query: 511 QQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           ++I ++  ALG    +         E LRY K++IMTDADVDG+HIA+L+LTF+++ M +
Sbjct: 476 EEIKNMFTALGVSVGTPDDAKALNLEKLRYHKIVIMTDADVDGSHIATLILTFYFRYMKE 535

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEML 624
           LIE  ++++ +PPL+ + +G +S YA  E+ + + ++  K  GK   + + R+KGLGEM 
Sbjct: 536 LIENGYVYIATPPLYLVKKGKESQYAWTEDQRLQAIQRLKGAGKEDSVHVQRYKGLGEMN 595

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           A QL +T M+   RTL +V I+             + LMG +   R +FI++ A +   +
Sbjct: 596 AEQLWDTTMNPEHRTLRQVTIDNAAEC----DRIFSMLMGDEVAPRREFIEKNARYAK-I 650

Query: 685 GT 686
             
Sbjct: 651 DA 652


>gi|190710549|gb|ACE95105.1| gyrase subunit B [Bacillus thuringiensis serovar kenyae]
          Length = 627

 Score =  622 bits (1604), Expect = e-176,   Method: Composition-based stats.
 Identities = 264/644 (40%), Positives = 379/644 (58%), Gaps = 21/644 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNA S EL V V R+  I  QK+ RGIP++ L+      ++ GT   F+PDP+IF +  
Sbjct: 120 VVNAPSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +D   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E    +  K G     VE ++ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K++E   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF+I QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKIQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            R+LL+V +   +    +  ++   LMG K + R  FIQE A +
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKY 627


>gi|167753648|ref|ZP_02425775.1| hypothetical protein ALIPUT_01928 [Alistipes putredinis DSM 17216]
 gi|167658273|gb|EDS02403.1| hypothetical protein ALIPUT_01928 [Alistipes putredinis DSM 17216]
          Length = 652

 Score =  622 bits (1604), Expect = e-176,   Method: Composition-based stats.
 Identities = 267/666 (40%), Positives = 383/666 (57%), Gaps = 25/666 (3%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
            +     +   + Y AS+I++LEGLE VR RP MYIG   EK LHHL  EV+DN++DE +
Sbjct: 2   STEGKEIKKQEEEYSASNIQVLEGLEAVRKRPAMYIGDIGEKGLHHLVYEVVDNSIDEAL 61

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AG+   I+V+++ +  +TV DNGRGIP + H K   KS LE++LT LHAGGKFD  +Y++
Sbjct: 62  AGHCTDIDVTINEDNSITVKDNGRGIPTDFHEK-EGKSALEVVLTVLHAGGKFDKGSYKV 120

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+S VNALS  L   + R   IF Q +S+G P SP+E      + RGT ITF+
Sbjct: 121 SGGLHGVGVSCVNALSTLLIAEIHRDGKIFRQSYSKGAPTSPVEVIGTC-DDRGTTITFK 179

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PD  IF     +    L    +  A+L+  +       ++  E       + FY   GLK
Sbjct: 180 PDGSIFTLTTEYKYDILANRLRELAFLNKGIHLNLLDKRQRDENG-EYVGDHFYSEEGLK 238

Query: 271 TYLQTKLENRSLISSE-IFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328
            +++     R    +E I    TEK G     VE A+ + +   E   SY N I T EGG
Sbjct: 239 EFVEYLDATRGQAITESIIYIDTEKNGVP---VEVAMQYNDSFSENVHSYVNNINTIEGG 295

Query: 329 THESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +KKYAE +    K    I  DD       ++SV + EP+F GQTKTK
Sbjct: 296 THLTGFRRALTRTLKKYAEDSGMLAKLKFDINGDDFREGLTAVVSVKVAEPQFEGQTKTK 355

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIR 445
           L + +    V+ A+     HYL +NP +A  +++ VI   +     R  +  V RKT + 
Sbjct: 356 LGNDEVSAAVDQAMSTALSHYLEENPRDAKAIVQKVILAATARHAARHAREMVQRKTVLS 415

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS       E+F VEGDSAGG+AKQ R+R+ QA++PLRGKILN+  A   
Sbjct: 416 GAGLPGKLADCSSRDRSIAEIFFVEGDSAGGTAKQGRDRNFQAIMPLRGKILNIEKAQEH 475

Query: 506 KIRNNQQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           ++  N++I ++  ALG    ++        E LRY+K+IIMTDADVDG+HIA+L+LTFF+
Sbjct: 476 RMWENEEIKNMFTALGVTIGTEEDSKALNLEKLRYDKIIIMTDADVDGSHIATLMLTFFF 535

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           ++M +LIE  H+++ +PPLF + +G +  Y   E+ + +I  E  K     + + R+KGL
Sbjct: 536 RKMKELIENGHVYIATPPLFLVKKGQQERYCWTEKERDEITAEMGK----GVHVQRYKGL 591

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GEM + QL ET M+ + R L +V I+    +  +     + LMG +   R +FI++ A +
Sbjct: 592 GEMNSHQLWETTMNPDTRILRKVTID----NAAEADRVFSMLMGDEVPPRREFIEKHAHY 647

Query: 681 IDDVGT 686
             ++  
Sbjct: 648 A-NIDA 652


>gi|225011911|ref|ZP_03702349.1| DNA gyrase, B subunit [Flavobacteria bacterium MS024-2A]
 gi|225004414|gb|EEG42386.1| DNA gyrase, B subunit [Flavobacteria bacterium MS024-2A]
          Length = 646

 Score =  622 bits (1604), Expect = e-176,   Method: Composition-based stats.
 Identities = 255/660 (38%), Positives = 383/660 (58%), Gaps = 24/660 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + ++ +  Y   SI+ LEG+E VRMRP MYIG    + LHHL  EV+DN++DE + GY 
Sbjct: 1   MSEENQNKQYSEDSIQALEGMEHVRMRPSMYIGDIGIRGLHHLVYEVVDNSIDEALGGYC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I V ++ +  +T  DNGRGIPV  H K    S LE+++T + AGGKFD  +Y++SGGL
Sbjct: 61  DEISVVINEDNSITTKDNGRGIPVGIHKK-EGVSALEVVMTKIGAGGKFDKDSYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+S VNALS+ L  TV R   ++ Q + RG  L+P++     +   GT +TFRPD +
Sbjct: 120 HGVGVSCVNALSERLTATVYRDGKVWEQTYERGKALAPVKSIGDSKE-TGTLVTFRPDAQ 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     ++   L    +  AYL+  +K   +  +E  +K    + E F    GL  ++ 
Sbjct: 179 IFTQTREYNYDTLSLRMRELAYLNKGIKISITDRRETDDKG-EFKSETFLSEKGLIEFIH 237

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333
              E+R  I  ++ + + EK G     VE A+ +     E    Y N I T EGGTH +G
Sbjct: 238 FLDESREAIIGDVISMEGEKNGVP---VEVAMIYNTSYSENLHSYVNNINTHEGGTHLAG 294

Query: 334 LRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F GQTKTKL + +
Sbjct: 295 FRRGLTSTLKKYADSSGLLDKLKFEIAGDDFREGLTAIISVKVGEPQFEGQTKTKLGNRE 354

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLP 450
               V  A+ +  ++YL +NP +A  +++ VI  ++ R   +K RE+  RKT +    LP
Sbjct: 355 VTSAVSQAVSEMLENYLEENPNDAKIIVQKVILAAQARHAAKKAREMVQRKTVMSGGGLP 414

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV  A   K+  N
Sbjct: 415 GKLSDCSEQDPALCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFEN 474

Query: 511 QQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           ++I ++  ALG    ++        E LRY KV+IM DADVDG+HI++L+LTFF++ M +
Sbjct: 475 EEIRNIYTALGVTIGTEEDSKALNLEKLRYHKVVIMCDADVDGSHISTLILTFFFRYMRE 534

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           LIE  ++++ +PPL+ + +G K  YA  ++ +  +++EF         + R+KGLGEM A
Sbjct: 535 LIESGYIYIATPPLYLVKKGQKKDYAWSDDQRDLLMQEFG----SGSSVQRYKGLGEMNA 590

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL +T M+  +RTL +V I+       +     + LMG +   R +FI++ A +  ++ 
Sbjct: 591 EQLWDTTMNPQERTLRKVTIDNGG----EADRVFSMLMGDEVPPRREFIEKNAIYA-NID 645


>gi|190710577|gb|ACE95119.1| gyrase subunit B [Bacillus thuringiensis serovar kenyae]
          Length = 627

 Score =  622 bits (1603), Expect = e-176,   Method: Composition-based stats.
 Identities = 264/644 (40%), Positives = 379/644 (58%), Gaps = 21/644 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            + YD   I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENAYDEGQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R+  I  QK+ RGIP++ L+      ++ GT   F+PDP+IF +  
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +D   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E    +  K G     VE ++ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K++E   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF+I QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKIQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            R+LL+V +   +    +  ++   LMG K + R  FIQE A +
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKY 627


>gi|84515342|ref|ZP_01002704.1| DNA topoisomerase IV subunit B [Loktanella vestfoldensis SKA53]
 gi|84510625|gb|EAQ07080.1| DNA topoisomerase IV subunit B [Loktanella vestfoldensis SKA53]
          Length = 652

 Score =  622 bits (1603), Expect = e-176,   Method: Composition-based stats.
 Identities = 346/652 (53%), Positives = 448/652 (68%), Gaps = 10/652 (1%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           + +  D+Y+ASSI +LEGLEPVR RPGMYIGGTDE+ALHHL +EV+DN+MDE +AG+AN 
Sbjct: 7   STTGPDDYNASSIEVLEGLEPVRKRPGMYIGGTDERALHHLVAEVLDNSMDEAVAGHANR 66

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV L  +  +T+ DNGRGIPV+ HPKFP+KS LE+IL TLHAGGKF    Y+ SGGLHG
Sbjct: 67  IEVELHADHSVTIRDNGRGIPVDPHPKFPDKSALEVILCTLHAGGKFSGKAYQTSGGLHG 126

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALSD + V VAR   +F Q+FSRG+PL P++K    +N+RGT +TF  D +IF
Sbjct: 127 VGASVVNALSDSMVVQVARNKELFEQRFSRGLPLGPIQKLGPTQNRRGTTVTFHADEQIF 186

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
           G    F  ARL K  QSKAYL   V+  W  +    E    P +  F+FPGGL  YL+  
Sbjct: 187 GS-QKFKPARLYKSIQSKAYLFSGVEIRWKTEINDGE---TPLEATFHFPGGLADYLKET 242

Query: 277 LENRSLISSEIFTGKTE--KKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESG 333
           L   +  + + F G  +   K    G VEWAI W    +  I SYCNT+ T EGGTH +G
Sbjct: 243 LGKSATYADKPFAGSVDFADKFNEPGKVEWAINWTPVRDGFIQSYCNTVPTPEGGTHVAG 302

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
              A+ +GIK Y EL  NK+A  I  +DLM     ++S FIREP F GQTK +L S  A 
Sbjct: 303 FWNAILKGIKGYGELANNKKAALITREDLMSGGCALVSCFIREPAFVGQTKDRLSSEIAA 362

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
           R  E A+RD FD++L  +   A  +L++++ R+EERL+RR+++E  RK+A +KLRLPGKL
Sbjct: 363 RMTEGAVRDHFDNWLAADTKSAGAILDFLVLRAEERLKRRQEKETARKSATKKLRLPGKL 422

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
            DC+     GTELFIVEGDSAGGS K ARNR NQA+LPL+GKILNV  A S K+  NQ+I
Sbjct: 423 TDCTSKDRKGTELFIVEGDSAGGSGKGARNRVNQALLPLKGKILNVLGAASNKLTTNQEI 482

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            DL +ALG    +++  +DLRYEK+IIMTDADVDGAHIASLL+TFF+ +M  LI+  HL+
Sbjct: 483 NDLCEALGVGMGTKFNVDDLRYEKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDHGHLY 542

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           L  PPL+R+TQG + VY  D+  K+K++ +    GKGKI++ RFKGLGEM A  LKET M
Sbjct: 543 LACPPLYRLTQGARRVYVADDAEKEKMMAK-GLGGKGKIDVQRFKGLGEMDAKDLKETTM 601

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D   R L+RV ++ D+    DT D + +LMG K + RF++IQE A F++++ 
Sbjct: 602 DPATRKLIRVTVHDDV--PGDTADLVERLMGKKPELRFQYIQENARFVEELD 651


>gi|326799865|ref|YP_004317684.1| DNA gyrase B subunit [Sphingobacterium sp. 21]
 gi|326550629|gb|ADZ79014.1| DNA gyrase, B subunit [Sphingobacterium sp. 21]
          Length = 652

 Score =  622 bits (1603), Expect = e-176,   Method: Composition-based stats.
 Identities = 263/659 (39%), Positives = 380/659 (57%), Gaps = 21/659 (3%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           +  N++ S+ Y A +I++LEGLE VR RP MYIG    K LHHL  EV+DN++DE +AGY
Sbjct: 2   SEENKNKSN-YSADNIQVLEGLEAVRKRPSMYIGDVGVKGLHHLVYEVVDNSIDEALAGY 60

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
              I V +  +  +TV DNGRGIP   + K  NKS LE+++T LHAGGKFD  TY++SGG
Sbjct: 61  CTDIHVIIHKDNSITVEDNGRGIPTGINKK-ENKSALEMVMTMLHAGGKFDKDTYKVSGG 119

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+S VNALS  L   V R+  IF Q++++G PL  ++   +  ++ GT +TF PDP
Sbjct: 120 LHGVGVSCVNALSTLLIAEVHREGKIFKQEYAQGKPLYDVKVIGET-DRTGTNVTFHPDP 178

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF     +    L    +  AYL+  ++     ++E  E   +   EEFY  GGL  ++
Sbjct: 179 SIFTMTTTYSYDTLAGRLRELAYLNKGIRLTLLDEREEQEDGAL-RHEEFYSEGGLSEFV 237

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHES 332
           +    NR  +  +    +  K+G     VE A+ + +   E   SY N I T EGGTH +
Sbjct: 238 KFLDGNRQPLIPDPIHVEGIKQGIP---VELALQYNDTYSENVHSYVNNINTIEGGTHVA 294

Query: 333 GLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R  LTR +K YA+ +   + +   I  DD       ++SV + EP+F GQTKTKL + 
Sbjct: 295 GFRRGLTRTLKAYADKSGLLKNLKVEITGDDFREGLTAVISVKVAEPQFEGQTKTKLGNN 354

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRKLRL 449
           +    V+ A+ +    YL +NP EA  +++ V I        R+ +  V RKT +    L
Sbjct: 355 EVMGAVDVAVGEILGTYLEENPREAKAIVQKVIIAAQARAAARKARDMVQRKTVMGGSGL 414

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC+ N     E+++VEGDSAGG+AKQ RNR  QA+LPLRGKILNV  A   KI  
Sbjct: 415 PGKLADCANNDPAKCEIYLVEGDSAGGTAKQGRNREFQAILPLRGKILNVEKAMEHKIYE 474

Query: 510 NQQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           N++I ++  ALG    +         E LRY ++IIMTDADVDG+HI +L+LTF+++ M 
Sbjct: 475 NEEIKNMFTALGVSIGTPEDAKALNLEKLRYHRIIIMTDADVDGSHITTLILTFYFRYMK 534

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEM 623
           +LIE+ ++++ +PPL+ + +G +  YA +E  +   ++  K  GK   + + R+KGLGEM
Sbjct: 535 ELIERGYVYIATPPLYLVKKGKEHEYAWNENQRLAAIQRLKGAGKEDSVHVQRYKGLGEM 594

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            A QL +T M+   RTL +V I              + LMG +   R +FI+  A +  
Sbjct: 595 NAEQLWDTTMNPETRTLRQVSIENAAEC----DRVFSMLMGDEVAPRREFIERNAKYAK 649


>gi|329770365|ref|ZP_08261747.1| DNA gyrase subunit B [Gemella sanguinis M325]
 gi|328836488|gb|EGF86148.1| DNA gyrase subunit B [Gemella sanguinis M325]
          Length = 638

 Score =  622 bits (1603), Expect = e-176,   Method: Composition-based stats.
 Identities = 258/654 (39%), Positives = 371/654 (56%), Gaps = 20/654 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              +     Y+A  I++LEGLE VR+RPGMYIG T  K LHHL  E++DN++DE +AG+ 
Sbjct: 1   MVEKKQMQEYNADQIQVLEGLEAVRVRPGMYIGSTSSKGLHHLVWEIVDNSIDEALAGHC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I V+++ + ++ V DNGRGIP++   +   K  LE+ILT LHAGGKF    Y++SGGL
Sbjct: 61  DTITVAIEKDNWIRVEDNGRGIPIDIQEQ-TGKPALEVILTVLHAGGKFGGGGYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS  L   V R   I S  F RG  +  +    +  +K GT I F+ DP+
Sbjct: 120 HGVGASVVNALSTNLEAYVHRDGKIHSMMFERGDVVQGITVIGET-DKTGTTIRFKADPE 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   ++   L    +  A+L+  +      ++E  EK      E F + GGL  Y++
Sbjct: 179 IFQETTVYEYDILRTRIRELAFLNKGITIILKDEREGQEKE-----ETFCYEGGLLEYVE 233

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              EN+  +  E      E +G     VE ++ +       I SY N I T EGGTHESG
Sbjct: 234 MLNENKDSLH-EAIYVHGEMEG---KEVEISMQYNTGYASNILSYANNINTHEGGTHESG 289

Query: 334 LRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
            + ALTR I  Y +  +  K   S+  DD+    V I+S+    P+F GQTKTKL + + 
Sbjct: 290 FKTALTRIINSYGKKNKLIKEKESLTGDDVREGLVAIISIKHPNPQFEGQTKTKLGNSEM 349

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
                    +  D +L++NP  A  ++E  ++ S  R+  +K RE   RK A+    LPG
Sbjct: 350 STITNKLFSEELDRFLLENPKVAKIIVEKGLQASRARIAAKKARESTRRKNALEFTNLPG 409

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS   A   ELF+VEGDSAGGSAK  RN   QA+LPL+GKILNV     +K+ +N 
Sbjct: 410 KLADCSSKDAAECELFLVEGDSAGGSAKLGRNSKFQAILPLKGKILNVEKVRIDKVLSND 469

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++  L+ A+G         + LRY K++IMTDADVDG+HI +LLLTFF++ M +LIE  +
Sbjct: 470 EVRSLITAVGMGIGETLNIDKLRYHKIVIMTDADVDGSHIRTLLLTFFFRYMRELIEAGY 529

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPLF +  G K  Y H +E  ++ +E++      K  + R+KGLGEM A +L +T
Sbjct: 530 VYIARPPLFGLKVGKKEYYCHTDEELKENIEKYAAD--KKYTVQRYKGLGEMNAEELWDT 587

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   R + +V I+      +    + + LMG K + R KFI+E A  + ++ 
Sbjct: 588 TMDPEHRLMYKVSIDD----AQRADAAFDTLMGEKVEPRRKFIEENALNVVNLD 637


>gi|320537025|ref|ZP_08037004.1| DNA gyrase, B subunit [Treponema phagedenis F0421]
 gi|320146100|gb|EFW37737.1| DNA gyrase, B subunit [Treponema phagedenis F0421]
          Length = 638

 Score =  622 bits (1603), Expect = e-176,   Method: Composition-based stats.
 Identities = 243/653 (37%), Positives = 375/653 (57%), Gaps = 24/653 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
            +  Y AS+I +LEGLE VR RPGMYIG T    LHHL  EV+DN +DE +AG+ + I V
Sbjct: 2   TNSTYSASNITVLEGLEAVRKRPGMYIGSTGPNGLHHLVYEVVDNCIDEAMAGFCDRITV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L+ N  + V DNGRGIPV+ HP+    S LEI+LT LHAGGKFD  +Y++SGGLHGVG+
Sbjct: 62  VLEKNDIVRVEDNGRGIPVDIHPQ-EGISALEIVLTKLHAGGKFDKGSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS  +  TV +      QKF  G+PL  ++K     +K GT I +  DP IF + 
Sbjct: 121 SVVNALSTWMEATVYKDGAEHYQKFEIGVPLDSVKKI-STTDKHGTTIRWAADPAIFKET 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             +D   L    +  A+L+  +      ++        P++  F F GG+  ++Q     
Sbjct: 180 TTYDFDVLATRLRELAFLNSNITIVMRDER-----LSTPKEATFAFEGGISHFVQYLHGT 234

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           + ++ +E    + EK       +E A+ + +     + S+ N I T EGGTH  G + AL
Sbjct: 235 KQVLPAEPIYIEAEKNDII---MEIALQYNDGYNENLLSFVNDINTREGGTHLEGFKSAL 291

Query: 339 TRGIKKYAE-----LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
           TR + ++ +     + +  +   +  +D+      ++S+ + EP+F GQTKTKL + D +
Sbjct: 292 TRVMNEFLKKNSKLIKKLDKEEKLTGEDVRAGLTAVISIKVPEPQFEGQTKTKLGNSDVR 351

Query: 394 RTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
             V++ + +    +  QNP    K+L + V E +     RR +    RK+ +    LPGK
Sbjct: 352 GIVDSFVNEKLTLFFEQNPAIIDKILEKTVSEATARIAARRAKEATRRKSGLDSFGLPGK 411

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS       E++IVEGDSAGGSAK+ R+   QA+LPL GK+LNV     +K+ NN++
Sbjct: 412 LADCSLKDPKLCEVYIVEGDSAGGSAKKGRDSKTQAILPLWGKMLNVEKTRIDKVMNNEK 471

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           +  ++ +LG      +  + +RY K+IIM DADVDG+HI +LLLTFF++ M  +IE+ ++
Sbjct: 472 LQPIIASLGTGIGKDFNIDKIRYHKIIIMADADVDGSHIRTLLLTFFFRYMPQIIEEGYV 531

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           +L  PPL++I+   K  Y +++E + ++L+E  K     + + R+KGLGEM  +QL ET 
Sbjct: 532 YLAMPPLYKISYNKKEWYVYNDEERDQVLKEIGKENN--VAVQRYKGLGEMDGTQLWETT 589

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           MD  +R ++RV +   +    +     + LMG + + R +FI+E A +  ++ 
Sbjct: 590 MDPARRKMMRVTLPDAI----EADRIFSTLMGEEVEPRRQFIEENAVYA-NLD 637


>gi|313204151|ref|YP_004042808.1| DNA gyrase subunit b [Paludibacter propionicigenes WB4]
 gi|312443467|gb|ADQ79823.1| DNA gyrase subunit B [Paludibacter propionicigenes WB4]
          Length = 654

 Score =  622 bits (1603), Expect = e-176,   Method: Composition-based stats.
 Identities = 266/665 (40%), Positives = 389/665 (58%), Gaps = 21/665 (3%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
                A ++AS NY ASSI++LEGLE VR RP MYIG    K LHHL  EV+DN++DE +
Sbjct: 2   SEEEKAKEAASANYGASSIQVLEGLEAVRKRPAMYIGDIGIKGLHHLVYEVVDNSIDEAM 61

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AG+ N I+V ++ N  +TV+DNGRGIPV+ H K   KS LE+++T LHAGGKFD  +Y++
Sbjct: 62  AGHCNNIQVFINENNSITVIDNGRGIPVDMHEK-EGKSALEVVMTVLHAGGKFDKDSYKV 120

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+S VNALS  + V V+R   ++ Q++S GIP +P+++         T+ TF 
Sbjct: 121 SGGLHGVGVSCVNALSTYVRVEVSRNGKLYMQEYSCGIPKAPVQEIGTSTTNG-TKTTFL 179

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PD  IF +   +    L    +  A+L+  +    +  +++ +     + E F+   GLK
Sbjct: 180 PDDSIFIESI-YKYDILAGRLRELAFLNAGITLTLTDKRQLNDDG-SFKTEVFHSDEGLK 237

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   E R  +   +    TEK G     VE A+ +       I SY N I T EGGT
Sbjct: 238 EFVEYIDEAREPLIESVIHISTEKNGIP---VEIAMTYNTSYNENIHSYVNNINTIEGGT 294

Query: 330 HESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R  LTR +KKYAE ++   K  I I  DD       ++S+ ++EP+F GQTKTKL
Sbjct: 295 HLAGFRRGLTRTLKKYAEDSKMLEKLKIEISGDDFREGLTAVISIKVQEPQFEGQTKTKL 354

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRK 446
            + +   +V+ A+ +   +YL +NP  A  ++E VI  +  R   RK RE+ ++ + +  
Sbjct: 355 GNNEVMGSVDMAVGEALGNYLEENPKAARIIVEKVILAATARYAARKAREMVQRKSPLSG 414

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC+       ELF+VEGDSAGG+AKQ R+R  QA+LPLRGKILNV  A   K
Sbjct: 415 GGLPGKLADCADKDPEKCELFLVEGDSAGGTAKQGRSRQFQAILPLRGKILNVEKAMQHK 474

Query: 507 IRNNQQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
           +  +++I ++  ALG    ++        + LRY KVIIMTDADVDG+HIA+L++TFF++
Sbjct: 475 VLESEEIRNIYTALGVTIGTEDDSKALNMKKLRYHKVIIMTDADVDGSHIATLIMTFFFR 534

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
            M +LIEQ +L++ +PPL+   +G    Y   E  +Q  +E++       I   R+KGLG
Sbjct: 535 HMKELIEQGYLYIATPPLYLCKKGKVEEYCWTEAQRQTFIEKYGGGTDSGIHTQRYKGLG 594

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           EM   QL +T M+   RTL +V I     +  +     + LMG     R +FI++ A++ 
Sbjct: 595 EMNEIQLWDTTMNPEHRTLRQVNIE----NAAEADHVFSMLMGDDVAPRRQFIEQNATYA 650

Query: 682 DDVGT 686
             +  
Sbjct: 651 K-IDA 654


>gi|189345573|ref|YP_001942102.1| DNA gyrase, B subunit [Chlorobium limicola DSM 245]
 gi|189339720|gb|ACD89123.1| DNA gyrase, B subunit [Chlorobium limicola DSM 245]
          Length = 643

 Score =  622 bits (1603), Expect = e-176,   Method: Composition-based stats.
 Identities = 259/659 (39%), Positives = 375/659 (56%), Gaps = 25/659 (3%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
                    +Y A++I+IL+G+E VRMRP MYIG    + LHHL  E++DN++DE + GY
Sbjct: 2   PDTGTQTPSSYLATNIQILDGIEHVRMRPAMYIGDIHTRGLHHLVYEIVDNSIDETLGGY 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
            + I V L+ +G +TV+D GRGIPV+ HP+   KS LE+++T + AGGKFD   Y++SGG
Sbjct: 62  NDYIFVGLNPDGSVTVIDRGRGIPVDIHPE-KQKSALELVMTVIGAGGKFDKGAYKVSGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG SVVNALS+   V V R    + Q++ RG+P   +++     + RGT+ TF+PD 
Sbjct: 121 LHGVGASVVNALSEWCEVEVYRDGKAYFQRYERGVPQGDVKEIGP-SDLRGTKTTFKPDH 179

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IF     F    ++   +  A+L+  ++                 +E F++ GGL  ++
Sbjct: 180 EIFKT-TEFRRDIIIDRMRELAFLNKTLRITVQD--------SDGNEEVFHYEGGLNEFV 230

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           Q   +NR  +  E      E+  T    VE A+ + +     + SY N I T EGGTH +
Sbjct: 231 QFTDQNRIKLLKEPVYIYGERDSTI---VELALQYNDSYQENVFSYVNNINTHEGGTHVT 287

Query: 333 GLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR +  YA+     + +   +  DD       ++SV + EP+F GQTKTKL + 
Sbjct: 288 GFRKALTRTLNAYAQKNDLLKNLKLSLTGDDFKEGLTAVISVKVAEPQFEGQTKTKLGNS 347

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           + Q  VE+ + +    +L  NP     ++E V   +  R   RK +E   RK+ +    L
Sbjct: 348 ETQSIVESIVNEQLAEFLESNPNVLKLIIEKVKGAAMSREAARKAKELTRRKSVLESSGL 407

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADCS N     EL+IVEGDSAGGSAKQ R+RS QA+LPL+GKILNV  A   K+  
Sbjct: 408 PGKLADCSINDPEHCELYIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKARLHKMLE 467

Query: 510 NQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           N++I  ++ ALG     +    E LRY K+IIMTDADVDGAHI +LLLTFF++ M  LIE
Sbjct: 468 NEEIKTIILALGTSFGEEEFSPEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYMRSLIE 527

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKK--HGKGKIEISRFKGLGEMLAS 626
              +F+  PPL+ +  G    YA D++ +  ++E  +K   GK  + I R+KGLGEM   
Sbjct: 528 AGKVFIAQPPLYLVKSGKDQQYAWDDDERNAVIESLRKMQKGKANVHIQRYKGLGEMNPE 587

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           QL  T MD   R+LL+V +   +    +     + LMG K + R  FI++ A ++  + 
Sbjct: 588 QLWSTTMDPAHRSLLQVSVENAM----EADKVFSTLMGDKVEPRRDFIEKNARYVRRLD 642


>gi|295111747|emb|CBL28497.1| DNA gyrase subunit B [Synergistetes bacterium SGP1]
          Length = 644

 Score =  621 bits (1602), Expect = e-176,   Method: Composition-based stats.
 Identities = 256/658 (38%), Positives = 390/658 (59%), Gaps = 22/658 (3%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
           D+     QSA ++Y+A+ I++LEGLE VR RPGMYIG T  + LHHL +EV+DN++DE +
Sbjct: 2   DNRTQGMQSAINDYNANKIKVLEGLEAVRKRPGMYIGDTGPRGLHHLVNEVVDNSIDEAM 61

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AG+   I+V++  +  +TV D+GRGIP + HP    + T E++LT LHAGGKF+   Y +
Sbjct: 62  AGFCTRIDVTIHKDESVTVQDDGRGIPTDPHPSN-GRPTCEVVLTRLHAGGKFEQGAYSV 120

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+S VNALS+   VT+AR     +Q+F RG+P++ L +   V + +GTRI + 
Sbjct: 121 SGGLHGVGVSAVNALSEWFEVTIARNGMERTQRFERGVPVTDLSEGVPV-DWQGTRIHYL 179

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PD +IF D        L       A+L+  V+   + ++    +        ++F GG+ 
Sbjct: 180 PDKEIFEDVHH-SLETLKSRFMELAFLNAGVRIFVTDERSSESRE-------YHFEGGVS 231

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            ++Q    +R+ + +       E+       V+ A+ + +E    I +Y N I T EGGT
Sbjct: 232 AFVQYLNRDRTTLFAPPVVISGERNDI---KVDMALQYNDEYQERILTYANLIHTVEGGT 288

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  GLR ALTR + + A   +  N +  ++  DDL      +LSV + EP+F GQTKTKL
Sbjct: 289 HLMGLRQALTRALNEAARSGKLLNDKEDNLTGDDLKEGLTCVLSVKLVEPQFEGQTKTKL 348

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL 447
            + D +  V++ + +     + + P     +++  +     R   +K +E+ RK A+  +
Sbjct: 349 GNSDVRGAVDSVVYEGLLSVIEERPDIVRPIVDKALRARRAREAAKKAKELVRKGAMTGM 408

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADCS      +E++IVEGDSAGGSAKQAR+R+ QA+LPLRGKILNV  A   K+
Sbjct: 409 NLPGKLADCSSKTPENSEIYIVEGDSAGGSAKQARDRTFQAILPLRGKILNVEKAQEHKM 468

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N++I  ++ ALGC   +++    LRY K+IIMTDADVDGAHI++LLLTFFY+ M +L+
Sbjct: 469 LQNREIQTIITALGCGIGTEFNATRLRYHKIIIMTDADVDGAHISTLLLTFFYRHMPELL 528

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
            + +++L  PPL+R+ +G +  Y + E+  ++ ++        K+ + R+KGLGEM   Q
Sbjct: 529 TEGYIYLAQPPLYRVQRGKQVHYCYTEKELRQHVD--GAPDPDKVGVQRYKGLGEMNPEQ 586

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           L  T MD   R L +VE++ DL       +  + LMG + + R +FI   A+   +V 
Sbjct: 587 LWMTTMDPANRILKKVELDDDL----LADEYFDILMGERVEPRREFITTNANSAKNVD 640


>gi|90419643|ref|ZP_01227553.1| type IIA topoisomerase [Aurantimonas manganoxydans SI85-9A1]
 gi|90336580|gb|EAS50321.1| type IIA topoisomerase [Aurantimonas manganoxydans SI85-9A1]
          Length = 684

 Score =  621 bits (1602), Expect = e-176,   Method: Composition-based stats.
 Identities = 395/686 (57%), Positives = 513/686 (74%), Gaps = 14/686 (2%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           M+D   DLFS    +   + +   K        A AN      Y A+ I +LEGLEPVR 
Sbjct: 11  MSD---DLFSGNAARQPRAPKPSAKPR------AAANLQEPSEYTAADIEVLEGLEPVRR 61

Query: 61  RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           RPGMYIGGTDEKALHHLF+EVIDN+MDE  AG+AN IEV+L+ +G L+V DNGRGIP++ 
Sbjct: 62  RPGMYIGGTDEKALHHLFAEVIDNSMDEATAGHANFIEVALEADGTLSVADNGRGIPIDP 121

Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
           HPK+ +KS LE+I+TTLHAGGKFD+  YE SGGLHGVG+SVVNALS+ L V VAR   ++
Sbjct: 122 HPKYRDKSALEVIMTTLHAGGKFDSKVYETSGGLHGVGVSVVNALSETLEVEVARNRRLY 181

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
            Q +SRG   + LE+   ++N+RGTRI FRPDP+IFG  A F   RLL M +SKAYL G 
Sbjct: 182 RQTYSRGHAQTGLEEIGDIQNRRGTRIRFRPDPEIFGAGARFRPERLLAMARSKAYLFGG 241

Query: 241 VKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
           V+  W+CD  +      +P ++ F+FPGGLK YL   L+ +  ++S+IF G+TEK  +  
Sbjct: 242 VEIRWACDPSLLPADGSVPSRDTFHFPGGLKDYLDGTLDKQGRVTSQIFAGRTEK-VSGH 300

Query: 300 GTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359
           G VEWA++W  ++  + SYCNTI T EGGTHE+GLR  L RG+K +AE++ NKRA  I  
Sbjct: 301 GAVEWAVSWTADDGFVRSYCNTIPTPEGGTHEAGLRSVLLRGLKAFAEVSGNKRAAVITG 360

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD+M++A  +LSVFIREPEF GQTK +L + +AQR VE ++RD FD +L  +P +A +L+
Sbjct: 361 DDIMLTASAMLSVFIREPEFVGQTKDRLATAEAQRIVEQSMRDSFDIWLASSPQDAARLI 420

Query: 420 EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +WV+ER++ERLRRR+++EV+RK+A RKLRLPGKLADCSQ+ +   E+FIVEGDSAGGSAK
Sbjct: 421 DWVVERADERLRRRQEKEVSRKSATRKLRLPGKLADCSQSGSVNAEIFIVEGDSAGGSAK 480

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
           QAR+R  QA+LPLRGKILNVASAG EK   NQQ+ DL+QALGC TRS+YREEDLRYE+VI
Sbjct: 481 QARDRKVQAILPLRGKILNVASAGREKFGANQQLADLIQALGCGTRSKYREEDLRYERVI 540

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599
           IMTDADVDGAHIASLL+TFFYQEM +LI   HLFL  PPL+++TQG K+ YA D+  +++
Sbjct: 541 IMTDADVDGAHIASLLITFFYQEMPELIRGGHLFLAVPPLYKLTQGGKTAYARDDADRER 600

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
           ++    K G+GK+EISRFKGLGEML +QLKET MD  KRTLLRV +++   +   T  ++
Sbjct: 601 LIARDFK-GRGKVEISRFKGLGEMLPAQLKETTMDPRKRTLLRVHMDETPEAG--TSGAV 657

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
           + LMG K + RF+F+Q+RA+F++D+ 
Sbjct: 658 SALMGNKPEARFRFLQDRAAFVEDLD 683


>gi|33864631|ref|NP_896190.1| DNA gyrase subunit B [Synechococcus sp. WH 8102]
 gi|33632154|emb|CAE06610.1| DNA gyrase subunit B [Synechococcus sp. WH 8102]
          Length = 655

 Score =  621 bits (1602), Expect = e-176,   Method: Composition-based stats.
 Identities = 263/654 (40%), Positives = 377/654 (57%), Gaps = 16/654 (2%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
                + Y A  I++LEGLEPVR RPGMYIG T  + LHHL  EV+DN++DE +AG+ + 
Sbjct: 4   ASKVQNAYGAEQIQVLEGLEPVRKRPGMYIGTTGPRGLHHLVYEVVDNSVDEALAGHCDR 63

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V+L  +G  ++ DNGRGIP + HP+   KS LE +LT LHAGGKF    Y++SGGLHG
Sbjct: 64  ILVTLGEDGSASISDNGRGIPTDVHPR-TGKSALETVLTVLHAGGKFGAGGYKVSGGLHG 122

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV---RNKRGTRITFRPDP 213
           VG+SVVNALS+ + VTV RQ  +  Q+F RG  +  L  +++      + GT + F+PD 
Sbjct: 123 VGVSVVNALSEWVQVTVRRQGQVHRQRFERGAAIGSLASEDQPASEAGETGTTVCFKPDI 182

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA-EKYGIPEKEEFYFPGGLKTY 272
           +IF     FD A L    +  AYL+G V+  +  ++E A  + G   +E +++ GG+K Y
Sbjct: 183 EIFTGGIVFDYATLSARLRELAYLNGGVRIVFRDERESARNEVGEAHEETYFYEGGIKEY 242

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHES 332
           +      +  +  +I    +EK G  +            +  I  + N I T +GGTH  
Sbjct: 243 VAYMNTEKDALHPDIIYVNSEKDGV-QVEAALQWCSDAYSDSILGFANNIRTVDGGTHIE 301

Query: 333 GLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           GL+  LTR +  +A+    ++    ++  +++      +LSV + EPEF GQTKTKL + 
Sbjct: 302 GLKTVLTRTLNAFAKKLGKRKESDSNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLGNT 361

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           + +  V+N + +    +L  NP     +LE  I+        R+ RE V RK+ +    L
Sbjct: 362 EVRGIVDNLVGEGLSQFLEFNPSVIGLILEKAIQAFNAAEAARRARELVRRKSVLESSTL 421

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILN+      KI  
Sbjct: 422 PGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYK 481

Query: 510 NQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           N +I  L+ ALG   + +  +   LRY +V+IMTDADVDGAHI +LLLTFFY+    L+E
Sbjct: 482 NTEIQALITALGLGIKGEDFDVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKALVE 541

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             ++++  PPL+++ +G    Y ++E   QK L+ F +  K    I RFKGLGEM+  QL
Sbjct: 542 GGYIYIACPPLYKVERGKNHTYCYNEGDLQKTLQSFGE--KANYTIQRFKGLGEMMPKQL 599

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            ET MD   RT+ RVEI   L    +       LMG K   R +FI+  ++ +D
Sbjct: 600 WETTMDPTTRTMKRVEIEDAL----EADRIFTILMGDKVAPRREFIETHSAELD 649


>gi|260062006|ref|YP_003195086.1| DNA gyrase subunit B [Robiginitalea biformata HTCC2501]
 gi|88783568|gb|EAR14739.1| DNA gyrase subunit B [Robiginitalea biformata HTCC2501]
          Length = 648

 Score =  621 bits (1602), Expect = e-176,   Method: Composition-based stats.
 Identities = 259/660 (39%), Positives = 380/660 (57%), Gaps = 22/660 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +    +Y A SI+ LEG+E VRMRP MYIG    + LHHL  EV+DN++DE + G+ 
Sbjct: 1   MSEEVKGKSYSADSIQALEGIEHVRMRPSMYIGDIGVRGLHHLVYEVVDNSIDEAMGGHC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I V+++ +  +TV DNGRGIPV+ H K    S LE+++T + AGGKFD  +Y++SGGL
Sbjct: 61  DTISVTINEDNSITVEDNGRGIPVDLHKK-EGVSALEVVMTKIGAGGKFDKDSYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS  L  TV R+  I+ Q++ RG  L P++      +  GT +TF PDP+
Sbjct: 120 HGVGVSVVNALSKHLKATVYREGKIWEQEYERGRTLYPVKSTG-TSDLNGTIVTFHPDPE 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     F    L    +  AYL+  V    +  +   ++ G    E FY   GLK +++
Sbjct: 179 IFQQTIEFSYDTLSNRMRELAYLNKGVAITITDRR--VKEKGEYLSERFYSEEGLKEFIR 236

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333
               NR  + +++ + + EK       VE A+ +     E    Y N I T EGGTH SG
Sbjct: 237 FLDGNREPLIADVISMEGEKNDIP---VEVAMVYNTSYTENLHSYVNNINTHEGGTHLSG 293

Query: 334 LRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R  LT  +KKYA+ +    K    +  DD       I+SV + EP+F GQTKTKL + +
Sbjct: 294 FRRGLTTTLKKYADASGMLDKLKFEVAGDDFREGLTAIVSVKVAEPQFEGQTKTKLGNRE 353

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLP 450
               V  A+ +   +YL ++P +A  +++ VI  ++ R    K RE+ ++   +    LP
Sbjct: 354 VSAAVSQAVSEMLTNYLEEHPDDAKTVVQKVILAAQARHAAAKAREMVQRKNPMSGGGLP 413

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS       E+F+VEGDSAGG+AK  R+R+ QA+LPLRGKILNV  A   K+  N
Sbjct: 414 GKLADCSDQDPERCEIFLVEGDSAGGTAKMGRDRNTQAILPLRGKILNVEKAMQHKVFEN 473

Query: 511 QQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           ++I ++  ALG    ++        + LRY KVIIM DADVDG+HI +L+LTFF++ M +
Sbjct: 474 EEIKNIYTALGVTIGTEEDSKALNLDKLRYHKVIIMCDADVDGSHIETLILTFFFRYMRE 533

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           LIE  H+++ +PPL+ + +G+K  YA +++ +  I+EE      G   I R+KGLGEM A
Sbjct: 534 LIEGGHVYIATPPLYLVKKGSKKRYAWNDKERDAIVEELSTSS-GSPGIQRYKGLGEMNA 592

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL +T M+   RTL +V I+    S        + LMG +   R +FI+  A +  ++ 
Sbjct: 593 EQLWDTTMNPEFRTLRQVTIDNATES----DRIFSMLMGDEVPPRREFIERNAVYA-NID 647


>gi|269118649|ref|YP_003306826.1| DNA gyrase subunit beta [Sebaldella termitidis ATCC 33386]
 gi|268612527|gb|ACZ06895.1| DNA gyrase, B subunit [Sebaldella termitidis ATCC 33386]
          Length = 642

 Score =  621 bits (1602), Expect = e-176,   Method: Composition-based stats.
 Identities = 265/651 (40%), Positives = 385/651 (59%), Gaps = 17/651 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           SDNY+A SI +LEGLE VR RPGMYIG T  K LHHL  EV+DN++DE +AG+ + I+V 
Sbjct: 2   SDNYNAESITVLEGLEAVRKRPGMYIGSTSAKGLHHLVWEVVDNSVDEALAGFCDTIKVR 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  + V+DNGRGIPVE H K   KSTLE++LT LHAGGKF+N  Y++SGGLHGVG+S
Sbjct: 62  VLEDNIIEVIDNGRGIPVEMHEKM-GKSTLEVVLTVLHAGGKFNNDNYKVSGGLHGVGVS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS+ L   + +   ++ QK+ RG+P   +++  +   +  GT I F+ D +IF   
Sbjct: 121 VVNALSETLEAIITKDGKVWYQKYHRGVPEEDIKQIGEAPEDAHGTTIRFKADGEIFETL 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             +D   LL   +  AYL+  ++   S +++  +    P+ ++ +F GG++ +L    ++
Sbjct: 181 -EYDYEILLTRLKEMAYLNKGLRIILSDERQKDK----PKTDDLHFEGGIRDFLSEIADD 235

Query: 280 RSLISSEIFTGK-TEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLRVA 337
             ++   I+     E     R  VE A+ +   +   + S+ N I T EGGTH SG R A
Sbjct: 236 ERVLDDIIYMDDSVELDNKKRVEVEIAMTYTISQREMVYSFVNNINTHEGGTHVSGYRTA 295

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR + + ++       +  S    D+    V ILS+ I EP+F GQTKTKL + +    
Sbjct: 296 LTRVLNEISKQMGLVKDKDGSFQGSDVREGLVAILSIKIPEPQFEGQTKTKLGNSEITGV 355

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN-RKTAIRKLRLPGKLA 454
           V   +      YL  +P EA+ ++E ++   + R   +K RE+  RK+++    LPGKLA
Sbjct: 356 VSGIVGSSLKMYLEDHPKEASNIIEKILMSKKAREAAKKARELVLRKSSLEVGSLPGKLA 415

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS   A   E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  AG  +   N +I 
Sbjct: 416 DCSSKDASECEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKAGIGRALENAEIR 475

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++ A G     +   E LRY K+IIMTDADVDGAHI +L+LTFFY+ + +LI + H+++
Sbjct: 476 AMITAFGAGFGDEMDLEKLRYHKIIIMTDADVDGAHIRTLMLTFFYRHLRELINEGHIYI 535

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL+++  G +  Y + +E  Q + +   +  K    I R+KGLGEM   QL ET MD
Sbjct: 536 AQPPLYKVQAGKQIQYVYSDEQLQSVTKVMDQENKR-YGIQRYKGLGEMNPEQLWETTMD 594

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              RTLL+V +              N LMG K + R +FI+E A ++ ++ 
Sbjct: 595 PEVRTLLKVSLEDATY----ADKMFNVLMGDKVEPRRQFIEEHAQYVRNLD 641


>gi|110637817|ref|YP_678024.1| DNA gyrase subunit B [Cytophaga hutchinsonii ATCC 33406]
 gi|110280498|gb|ABG58684.1| DNA gyrase subunit B [Cytophaga hutchinsonii ATCC 33406]
          Length = 652

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 255/656 (38%), Positives = 374/656 (57%), Gaps = 21/656 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +  +  Y A SI++LEGLE VR RP MYIG    K LHHL  EV+DN++DE +AG+   
Sbjct: 5   TEQNAAGYSADSIQVLEGLEAVRKRPAMYIGDIGIKGLHHLVWEVVDNSIDEALAGHCTD 64

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V ++ N  +TV DNGRGIP     K+  KS LE++LT LHAGGKFD  +Y++SGGLHG
Sbjct: 65  ITVEINENNSITVTDNGRGIPTGVIAKY-GKSALEVVLTVLHAGGKFDKDSYKVSGGLHG 123

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+S VNALS ++ VTV     +  Q++ +GIP   +++  +  +  GT++ F PD  IF
Sbjct: 124 VGVSCVNALSTDMKVTVYSHGKVHQQEYKKGIPQYDVKEIGE-SDLHGTKVQFLPDDTIF 182

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
              + +    +    +  ++L+  ++      +   +  G  E E F+  GGL+ ++   
Sbjct: 183 TS-SEYKYETIANRLRELSFLNKGIRITLQDHR-QVDAEGKSEIEMFHSEGGLREFVDYL 240

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335
              R  +       +++K       VE A+ +     E   SY N I T EGGTH +G R
Sbjct: 241 DSTREKLIPTPLYMESDKGPIP---VEVAMLYNTSYSENVFSYVNNINTIEGGTHVAGFR 297

Query: 336 VALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR +K YA+ +    K  + +  DD       ++SV ++EP+F GQTKTKL + D  
Sbjct: 298 RALTRTLKSYADKSGMLEKLKMEVTGDDFREGLTAVISVKVQEPQFEGQTKTKLGNSDVM 357

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGK 452
             V+  + +  + YL +NP EA  +++ VI  ++ R   RK RE+  RK  +    LPGK
Sbjct: 358 GAVDQVVGEMLNTYLEENPKEAKIIVQKVILAAQARNAARKAREMVQRKNVLSGSGLPGK 417

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS++     EL++VEGDSAGGSAKQ R+R   A+LPLRGKILNV  A   +I  N +
Sbjct: 418 LADCSESDPEKCELYLVEGDSAGGSAKQGRDRKYHAILPLRGKILNVEKAQEHRIYENDE 477

Query: 513 IMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
           I +++ ALG    ++          LRY KVIIMTDAD+DG+HI +L+LTFF++ M  LI
Sbjct: 478 IKNMITALGVSFGTEEGEKVLNLTKLRYHKVIIMTDADIDGSHIRTLILTFFFRYMRALI 537

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLAS 626
           +  H+++  PPL+ + +G +  Y   EE ++  ++E  K GK   + I R+KGLGEM   
Sbjct: 538 DGGHVYIAQPPLYLVKRGKEEKYCWTEEQREAAVKELAKDGKEDSVGIQRYKGLGEMNPE 597

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           QL  T MD  KR+L +V +     S  +     + LMG +   R  FI++ A +  
Sbjct: 598 QLWSTTMDPEKRSLKQVSVE----SAAEADHLFSMLMGDEVAPRRDFIEKNARYAK 649


>gi|86137425|ref|ZP_01056002.1| DNA topoisomerase IV subunit B [Roseobacter sp. MED193]
 gi|85825760|gb|EAQ45958.1| DNA topoisomerase IV subunit B [Roseobacter sp. MED193]
          Length = 652

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 348/652 (53%), Positives = 451/652 (69%), Gaps = 10/652 (1%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           +    + YDASSI +LEGLEPVR RPGMYIGGTDE+ALHH+ +E++DN+MDE +AG+AN 
Sbjct: 7   STPNDETYDASSIEVLEGLEPVRQRPGMYIGGTDERALHHMVAEILDNSMDEAVAGHANR 66

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV+L  +  +T+ DNGRGIP++ HPKFP+KS LE+IL TLHAGGKF    Y+ SGGLHG
Sbjct: 67  IEVTLHADYSVTISDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQTSGGLHG 126

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALSD L V VA+   +F Q+FSRG+PL P+EK     NKRGT +TF  D +IF
Sbjct: 127 VGSSVVNALSDSLVVQVAKNKELFEQRFSRGLPLGPVEKVGAAPNKRGTFVTFHADEQIF 186

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
           G    F   RL  + +SKAYL   V+  W  + +  E    P +  F+FPGGLK YL   
Sbjct: 187 GS-HRFKPKRLFTLVRSKAYLFSGVEIRWKSEIDDKE---TPVEATFHFPGGLKDYLTEV 242

Query: 277 LENRSLISSEIFTGKTE--KKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESG 333
           L   S+ +   F GK E  +K    G VEWAI W    +    SYCNT+ T EGGTH +G
Sbjct: 243 LGKSSVYADVPFAGKVEFREKFGEPGYVEWAINWTPSRDGFTQSYCNTVPTPEGGTHVAG 302

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
              A+ +GIK Y EL  NK+A SI  DDLM     ++S FI +P F GQTK +L +  A 
Sbjct: 303 FWAAILKGIKAYGELVGNKKAGSITRDDLMAGGCALVSCFIADPAFVGQTKDRLSTESAA 362

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
           + VEN++RD FD++L  +   A  +L++++ R+EERLRR++++E  RK+A +KLRLPGKL
Sbjct: 363 KMVENSVRDHFDNWLAADTKSAGAILDFLVLRAEERLRRKQEKETQRKSATKKLRLPGKL 422

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
            DC+     GTELFIVEGDSAGGS K ARNR+NQA+LPL+GKILNV  A S KI  N +I
Sbjct: 423 TDCTSKDRAGTELFIVEGDSAGGSGKGARNRNNQALLPLKGKILNVLGAASNKIGTNAEI 482

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            DL +ALG  T +++  +DLRY+K+IIMTDADVDGAHIASLL+TFF+ +M  LI+  HL+
Sbjct: 483 RDLCEALGVGTGTKFNLDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDGGHLY 542

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           L  PPLFR+TQG K VY  DE  + K +E+    GKGKI++SRFKGLGEM A  LKET M
Sbjct: 543 LACPPLFRLTQGAKRVYCLDEAERDKWMEK-GLGGKGKIDVSRFKGLGEMDAKDLKETTM 601

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D N R L+RV I++D     +T D + +LMG K + R+++IQE A F++++ 
Sbjct: 602 DPNTRKLIRVTIDEDE--PGETGDLVERLMGKKPELRYQYIQENAKFVEELD 651


>gi|154491922|ref|ZP_02031548.1| hypothetical protein PARMER_01552 [Parabacteroides merdae ATCC
           43184]
 gi|154088163|gb|EDN87208.1| hypothetical protein PARMER_01552 [Parabacteroides merdae ATCC
           43184]
          Length = 651

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 256/658 (38%), Positives = 383/658 (58%), Gaps = 21/658 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           ++ S  Y A SI++LEGLE VR RP MYIG T EK LHHL  EV+DN++DE +AG+   +
Sbjct: 6   KNTSTEYSADSIQVLEGLEAVRKRPSMYIGDTSEKGLHHLVYEVVDNSIDEALAGFCTQV 65

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +  ++V D+GRGIPV+ H K    S LE++LT LHAGGKFD  +Y++SGGLHGV
Sbjct: 66  DVVINEDNSISVTDDGRGIPVDIHEK-EGVSALEVVLTVLHAGGKFDKGSYKVSGGLHGV 124

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+S VNALS  L   V R   +  Q+FS G PL  +E   +  +  GT I F+PD  IF 
Sbjct: 125 GVSCVNALSTYLRAEVRRDGKVHMQEFSCGKPLHSIEVIGET-DVTGTTIMFKPDGSIFS 183

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               +    L    +  A+L+  +    +  + + E     + E F    GLK +++   
Sbjct: 184 VT-EYKYEILAARLRELAFLNAGITLSLTDKRVVKEDG-SYKSEIFRSEEGLKEFVRYID 241

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRV 336
            ++  +  ++    TEK+G     VE A+ +    N  + SY N I T EGGTH +G R 
Sbjct: 242 RSKEQLIPDVIHIVTEKQGIP---VEVAMTYNTSFNESVFSYVNDINTIEGGTHLAGFRR 298

Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
            LTR +KKYA+ ++   K  + I  DD       ++S+ + EP+F GQTKTKL + +   
Sbjct: 299 GLTRTLKKYADDSKLLEKAKVEISGDDFREGLTAVISIKVAEPQFEGQTKTKLGNNEVTG 358

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
            V+ A+ +   +YL ++P EA  +++ VI      +  R+ +  V RK+ +    LPGKL
Sbjct: 359 AVDQAIGEALGYYLEEHPKEAKIIVDKVILAAQARQAARKARELVQRKSPMTGGGLPGKL 418

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS   A   ELF+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV  A   K+  +++I
Sbjct: 419 ADCSSKDAALCELFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMDHKVFESEEI 478

Query: 514 MDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            ++ +A+G    ++   +      LRY KVIIMTDADVDG+HIA+L+LTFF++ M  LIE
Sbjct: 479 QNIFRAMGVTIGTEEDPKELNLSKLRYHKVIIMTDADVDGSHIATLILTFFFRRMRALIE 538

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             +++L +PPL+   +G    Y   ++ +Q  ++++    + +I   R+KGLGEM   QL
Sbjct: 539 NGYVYLATPPLYLCKKGKVEEYCWTDQQRQAFIDKYGGGNENQIHTQRYKGLGEMNDHQL 598

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
            +T M+   RTL ++ I+    S  +       LMG     R +FI+E A++  ++  
Sbjct: 599 WDTTMNPENRTLKQITID----SAAEADQIFAMLMGEDVGPRREFIEENATYA-NIDA 651


>gi|153939432|ref|YP_001389375.1| DNA gyrase subunit B [Clostridium botulinum F str. Langeland]
 gi|152935328|gb|ABS40826.1| DNA gyrase, B subunit [Clostridium botulinum F str. Langeland]
 gi|295317482|gb|ADF97859.1| DNA gyrase, B subunit [Clostridium botulinum F str. 230613]
          Length = 637

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 254/653 (38%), Positives = 374/653 (57%), Gaps = 22/653 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           +Q     YD S I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AG+   
Sbjct: 2   SQENKQVYDESQIQVLEGLEAVRKRPGMYIGSTSLRGLHHLVYEIVDNSIDEALAGFCTH 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV +  +  +TVVD+GRG+PV  H K   K  +E+I+T LHAGGKF    Y++SGGLHG
Sbjct: 62  IEVFIHKDNSITVVDDGRGMPVGMHSKV-KKPAVEVIMTILHAGGKFGGGGYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS++  V V R+  I+ Q+F RGI  + L+      +  GT+I F+PD +IF
Sbjct: 121 VGASVVNALSEQCEVEVRREGHIWKQRFERGITKTGLDIVGDTEDH-GTKIYFKPDIEIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   F+   L +  +  A+L+  +K   + ++         +KE F++ GGL++++   
Sbjct: 180 DEL-EFEYDTLAQRLRELAFLNKGIKISLTDER-------YDKKEMFHYEGGLRSFVLYL 231

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
             N+  +  +       K G     VE A+ + +     I S+ N I T EGGTH +G +
Sbjct: 232 NRNKEKLHQQPIYVDKNKDG---CIVEIAMQYNDGYAENIFSFANNIDTIEGGTHLAGFK 288

Query: 336 VALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR I  YA      +    ++  DD+      ++SV + +P+F GQTKTKL + + +
Sbjct: 289 SALTRAINDYARKFNYLKDTDKNLSGDDVREGLTAVISVKLTDPQFEGQTKTKLGNSEVR 348

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
             V+  + +    +L +NP     ++E  +  S  R   ++ RE   RK+ +    LPGK
Sbjct: 349 GIVDTIVGESIGSFLEENPNVGKIIIEKGLSASRAREAAKRARELTRRKSVLESTSLPGK 408

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS       E+++VEGDSAGGSAKQ RNR  QA+LPL+GKI+NV     +KI  + +
Sbjct: 409 LADCSSKDPSLCEIYLVEGDSAGGSAKQGRNREFQAILPLKGKIMNVEKQRLDKILASDE 468

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++ A G     ++  E +RY ++IIMTDADVDGAHI +LLLTFFY+ M +LIE+ H+
Sbjct: 469 IRAMITAFGAGIGKEFDIEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMKELIEEGHV 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL+RI +  K +Y + +      L E          I R+KGLGEM   QL +T 
Sbjct: 529 YIAQPPLYRIFKAKKEIYVYSDPELDAALLELGGKDTNT-NIQRYKGLGEMNPEQLWDTT 587

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           MD   RTLL+V I   +       +    LMGTK + R +FI+  A  + ++ 
Sbjct: 588 MDPEHRTLLQVTIEDAMV----ADEIFTILMGTKVEPRREFIENNADKVVNLD 636


>gi|224477952|ref|YP_002635558.1| DNA gyrase subunit B [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222422559|emb|CAL29373.1| DNA gyrase subunit B [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 640

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 255/655 (38%), Positives = 380/655 (58%), Gaps = 20/655 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            ++ + ++NY A  I++LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AGYA
Sbjct: 1   MSDVNNTENYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYA 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + IEV ++ + ++ V DNGRGIPV+   K   +  +E+ILT LHAGGKF    Y++SGGL
Sbjct: 61  DKIEVIIEKDNWIRVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS++L V V R N I++Q + RGIP   L+   +     GT I F+ DP+
Sbjct: 120 HGVGSSVVNALSEDLEVYVHRNNKIYNQAYKRGIPQYDLKVIGET-EHNGTEIRFKADPE 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   +    L K  +  A+L+  ++     +++         ++ +++ GG+K+Y++
Sbjct: 179 IFTETTTYQYEVLQKRIRELAFLNKGIQISLRDERDEDNI----REDSYHYEGGIKSYVE 234

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESG 333
              EN+  +  E       K       VE AI +         SY N I T EGGTHE G
Sbjct: 235 LLNENKEPLFDEPVYVHDRKDDV---EVEIAIQYNSGFTTNLLSYANNIHTYEGGTHEDG 291

Query: 334 LRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            + ALTR +  Y   +   +        +D       I+S+   +P+F GQTKTKL + +
Sbjct: 292 FKRALTRVLNSYGTKSGLIKEDKERLSGEDTREGMTAIVSIKHEDPQFEGQTKTKLGNSE 351

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            ++ V+    +  + +L ++P  A  ++E  +  S  R+  +K RE   RK+A+    LP
Sbjct: 352 VRQIVDRLSAEDMERFLYEHPQVARIIIEKGLMASRARIAAKKAREVTRRKSALEVSSLP 411

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS      +E+F+VEGDSAGGS K  R+   QA+LPLRGKILNV  +  ++I NN
Sbjct: 412 GKLADCSSKNPEESEIFLVEGDSAGGSTKLGRDSRTQAILPLRGKILNVEKSRLDRILNN 471

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
            +I  ++ A G     ++     RY K++IMTDADVDGAHI +LLLTFFY+ M  LIE  
Sbjct: 472 NEIRSMITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAG 531

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPLF++TQG +  Y  +E   +K+  E K     K  ISR+KGLGEM A QL E
Sbjct: 532 YVYIAQPPLFKLTQGKQKYYVFNERELEKLKSELKPT--PKWSISRYKGLGEMDADQLWE 589

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T M+   R++L+V +   +    +   +   LMG   + R +FI++ A +  ++ 
Sbjct: 590 TTMNPEHRSMLQVTLEDAI----EADTTFEMLMGDVVENRRQFIEDNAVYA-NLD 639


>gi|190710563|gb|ACE95112.1| gyrase subunit B [Bacillus thuringiensis serovar entomocidus]
          Length = 627

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 265/644 (41%), Positives = 379/644 (58%), Gaps = 21/644 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN +DE +AGY + I VS
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNCIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R+  I  QK+ RGIP++ L+      ++ GT   F+PDP+IF +  
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +D   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E    +  K G     VE ++ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K++E   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPSVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF+I QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKIQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            R+LL+V +   +    +  ++   LMG K + R  FIQE A +
Sbjct: 588 VRSLLQVSLQGAI----EADETFEILMGDKVEPRRNFIQENAKY 627


>gi|145577991|gb|ABP82714.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus
           mycoides]
          Length = 631

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 259/649 (39%), Positives = 377/649 (58%), Gaps = 22/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V D+GRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSIVVTDDGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNAL  EL V V R   I  QK+ RG+P + L+   +  ++ GT   F+PD +IF +  
Sbjct: 120 VVNALPTELEVFVHRDGKIHYQKYERGVPAADLKVIGET-DRTGTITRFKPDSEIFTETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E       K G     VE A+ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVDGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  +++   
Sbjct: 470 ITAIGTNIGGDFAIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-AQ 528

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF++ QG K  YA++ +  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 529 PPLFKVQQGKKIQYAYNNKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 586

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            R+LL+V +   +    +  ++   LMG K + R  FIQE A ++ ++ 
Sbjct: 587 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 631


>gi|300774234|ref|ZP_07084101.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300758913|gb|EFK55742.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 652

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 263/662 (39%), Positives = 383/662 (57%), Gaps = 21/662 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              +  +  Y A +I++LEGLE VR RP MYIG T  K LHHL  EV+DN++DE +AGY 
Sbjct: 2   SEEKKNTSTYSADNIQVLEGLEAVRKRPSMYIGDTGVKGLHHLVYEVVDNSIDEAVAGYC 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           N I V++     ++V DNGRGIP   + K  NKS LE+++T LHAGGKFD  TY++SGGL
Sbjct: 62  NDILVTIHEGNSISVQDNGRGIPTGINKK-ENKSALELVMTVLHAGGKFDKDTYKVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+S VNALS  L   V R   IF Q++ +G P   ++   +   + GT +TF PDP+
Sbjct: 121 HGVGVSCVNALSTLLIAEVHRDGQIFKQEYEKGKPKYDVKAIGE-SERTGTTVTFFPDPE 179

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     ++   L    +  A+L+  ++     ++EI +      K+ F+  GGL+ +++
Sbjct: 180 IFTMTTVYNYDTLSNRLRELAFLNKGIRLTIVDEREILDDG-SFRKDVFFSEGGLQEFVK 238

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESG 333
               NR  + S     +  K+G     VE A+ + +   E   SY N I T EGG+H +G
Sbjct: 239 FLDGNRQSLISNPIYVEGIKQGVP---VELALQYNDTYSENVHSYVNNINTIEGGSHVAG 295

Query: 334 LRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R  LTR +KKYAE +   + + +    DD       ++SV + EP+F GQTKTKL + +
Sbjct: 296 FRRGLTRTLKKYAEDSGLLKNLKVEIAGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNE 355

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLP 450
               V+ A+ +    YL +NP EA  +++  VI        R+ +  V RKT +    LP
Sbjct: 356 VMGAVDVAVGEILSTYLEENPREAKMIVQKVVIAAQARAAARKAREMVQRKTVMGGSGLP 415

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS N  H  E+F VEGDSAGG+AKQ R+R  QA++PLRGKILNV  A   KI  N
Sbjct: 416 GKLADCSDNDPHKCEIFFVEGDSAGGTAKQGRDRKFQAIMPLRGKILNVEKAMEHKIYEN 475

Query: 511 QQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           ++I ++  ALG    +         E LRY K++IMTDADVDG+HIA+L+LTF+++ M +
Sbjct: 476 EEIKNMFTALGVSVGTADDAKALNLEKLRYHKIVIMTDADVDGSHIATLILTFYFRYMKE 535

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEML 624
           LIE  ++++ +PPL+ + +G +S YA  EE + + ++  K  GK   + + R+KGLGEM 
Sbjct: 536 LIENGYVYIATPPLYLVKKGKESEYAWTEEQRLQAIQRLKGAGKEDSVHVQRYKGLGEMN 595

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           A QL +T M+   RTL +V I+             + LMG +   R +FI++ A +   +
Sbjct: 596 AEQLWDTTMNPEHRTLRQVTIDNAAEC----DRIFSMLMGDEVAPRREFIEKNARYAK-I 650

Query: 685 GT 686
             
Sbjct: 651 DA 652


>gi|51891144|ref|YP_073835.1| DNA gyrase B subunit [Symbiobacterium thermophilum IAM 14863]
 gi|51854833|dbj|BAD38991.1| DNA gyrase B subunit [Symbiobacterium thermophilum IAM 14863]
          Length = 638

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 264/654 (40%), Positives = 379/654 (57%), Gaps = 23/654 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           N   ++ Y    I++LEGLE VR RPGMYIGGT ++ LHHL  E+IDNA+DE +AG+ + 
Sbjct: 2   NTHGTEQYTGEQIQVLEGLEAVRRRPGMYIGGTSQRGLHHLIWEIIDNAVDERLAGFCDK 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V+L  +G ++V DNGRGIPV+ HPK    ST+E + T LHAGGKF    Y++SGGLHG
Sbjct: 62  IVVTLHSDGSVSVSDNGRGIPVDIHPK-TGISTVETVYTMLHAGGKFGGGAYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG +VVNALS +L++ V +   ++  +F+ G       ++     + GT + F PDP+IF
Sbjct: 121 VGAAVVNALSRKLYIQVKQNGGVYEVEFANGGKTLYPLRRVGDTKEHGTYVRFWPDPEIF 180

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                FD+  ++   +  A+L+  +   +  +K  AE         F +  GL+T++Q  
Sbjct: 181 ESV-EFDSEAIVTRLRDTAFLNQGLFIQFIDEKAGAE-------YRFKYNEGLQTFVQYL 232

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
             +R  + ++        K T    +E AI + +     I S+ N I T EGGTHE+GL+
Sbjct: 233 NRSREPLHAKPIYVF---KATDTQEMELAIQYTDAYSENILSFANNIRTVEGGTHETGLK 289

Query: 336 VALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR I  YA   +  +    ++  +D+      ILSV ++EP+F GQTKTKL S + +
Sbjct: 290 TALTRVINSYARKYKLLKDNEDNLSGEDIREGMTAILSVKLQEPQFEGQTKTKLGSSEME 349

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
             V  A+ +    +L +NP  A +++E  +  +  R   RK RE V RK+A+    LPGK
Sbjct: 350 TFVAAAVSEGLSDFLEENPAIAKRIVEKALSAARAREAARKARELVRRKSALEITALPGK 409

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L DC+      +ELF+VEGDSAGGSAK  R+R  QAVLPLRGKILNV  A  +KI +N++
Sbjct: 410 LTDCTSRDPSESELFLVEGDSAGGSAKMGRDRRIQAVLPLRGKILNVEKARLDKILSNEE 469

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  L+ A+G      +     RY KVIIMTDADVDG+HI +LLLTFF++ M  LIE  +L
Sbjct: 470 IRTLITAVGAGIGDDFDISKCRYHKVIIMTDADVDGSHIRTLLLTFFFRFMRPLIEAGYL 529

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++ SPPL+ I +G +  YA+ E+ K +++              R+KGLGEM   QL ET 
Sbjct: 530 YIASPPLYMIRKGKQVYYAYSEQEKDQVIARIGGVTDKP---QRYKGLGEMNPEQLWETT 586

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           MD +KR L +V +     +          LMG K + R +FIQ  A  + ++ T
Sbjct: 587 MDPSKRILYKVTMEDAAEATA----LFETLMGEKVEPRREFIQRNAHLVQNLDT 636


>gi|328949382|ref|YP_004366719.1| DNA gyrase, B subunit [Treponema succinifaciens DSM 2489]
 gi|328449706|gb|AEB15422.1| DNA gyrase, B subunit [Treponema succinifaciens DSM 2489]
          Length = 641

 Score =  621 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 248/651 (38%), Positives = 369/651 (56%), Gaps = 23/651 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + Y A SI++L+GLE VR RPGMYIG T    LHHL  EV+DN++DE +AGY   I V+L
Sbjct: 6   NQYGAGSIQVLKGLEAVRKRPGMYIGSTGPNGLHHLVYEVVDNSIDEAMAGYCTQITVAL 65

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +    V DNGRGIPV+ HP   + S LE++LT LHAGGKFD S Y++SGGLHGVG+S 
Sbjct: 66  EKDDICRVEDNGRGIPVDIHP-TEHISALELVLTRLHAGGKFDKSNYKVSGGLHGVGVSC 124

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  +   V +    + QK++ GIP S +E         GT I ++ D  IF +   
Sbjct: 125 VNALSVWMEAFVNKDGKRYHQKYAEGIPKSKVECIGDT-ELHGTTIRWKADASIFTETTT 183

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L    +  A+L+  +   +  ++        P++  F F GG+K Y+    E + 
Sbjct: 184 YNFDVLSTRLRELAFLNPGITIIFRDER-----LENPKEVVFKFEGGIKHYVSYLNEGKK 238

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
           +I  E      E+       +E A+ + +     I SY N I T EGGTH  G ++ALT 
Sbjct: 239 IIPEEPIYINGEENDVI---IELAMQYNDSYSENIFSYVNDINTREGGTHLDGFKIALTV 295

Query: 341 GIKKYAEL-----TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            + K+ E       +  +   +  DD+ +    ILS+ I EP+F GQTKTKL + + +  
Sbjct: 296 VLNKFLEKNEKLLKKLDKDEKLTGDDVRVGLTAILSLKIPEPQFEGQTKTKLGNSEVRGY 355

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454
           V++ +++    +  QNP   T +LE  + E +     R+ +    RK  I    LPGKL+
Sbjct: 356 VDSLVKEKLTLFCEQNPQITTMILEKAVGEAAARIAARKAKDSARRKNNIDSFGLPGKLS 415

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS   A   E++IVEGDSAGGSAK+ R+   QA+LPL GK+LNV    ++K+ NN+++ 
Sbjct: 416 DCSSKNAAECEVYIVEGDSAGGSAKKGRDAKTQAILPLWGKMLNVEKVRADKVVNNEKLQ 475

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++ +LG      +  E LRY K+IIM DADVDG+HI +LLLTFF++ M DLIE+ +++L
Sbjct: 476 PVIASLGAGFGKDFNIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMPDLIEKGYVYL 535

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPLF+I  G + +Y + +E +   LE+     + K ++ R+KGLGEM  +QL +T M+
Sbjct: 536 AMPPLFKIEIGKQKIYVYSDEERDAELEKLG-DKREKADVQRYKGLGEMDGNQLWDTTMN 594

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              R +  V I   +          +  MG + + R KFI+E A +  ++ 
Sbjct: 595 PETRRMKVVTIPDAV----AADRIFSICMGEEVEPRRKFIEENAVYA-NLD 640


>gi|209549430|ref|YP_002281347.1| DNA topoisomerase IV subunit B [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535186|gb|ACI55121.1| DNA topoisomerase IV, B subunit [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 704

 Score =  621 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 444/706 (62%), Positives = 541/706 (76%), Gaps = 27/706 (3%)

Query: 3   DDSIDLFSTLPPQSQGSSEK----------------------LKKSGEIPDSPAFANQSA 40
           DDS DLFS +P   +    +                         S     S      S 
Sbjct: 2   DDSNDLFSGMPLSEKREEAQKPAAAAERPPVAAAPAAAPPAAGAPSAAGASSRPAPTTSN 61

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +D Y ASSIR+LEGLEPVRMRPGMYIGGTDEKALHHLF+EVIDNAMDE +AG+AN IEV 
Sbjct: 62  ADEYGASSIRVLEGLEPVRMRPGMYIGGTDEKALHHLFAEVIDNAMDEAVAGHANFIEVY 121

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           LD  G+LTV DNGRGIPVENHP+ P KSTLE+I+T LHAGGKFD   YE SGGLHGVG+S
Sbjct: 122 LDLEGYLTVSDNGRGIPVENHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVS 181

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALSD+L V VAR   ++ Q+FSRG+P   LE+   V N+RGTR+ F PDP+IFGD  
Sbjct: 182 VVNALSDDLEVEVARNRKLYRQRFSRGLPQGGLEELGDVHNRRGTRVRFHPDPQIFGDHM 241

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEI-AEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
            FDAAR+ +M +SKAYL G V+  WSC++ +  E   +P+K  F+FPGGLK YLQ  +  
Sbjct: 242 KFDAARVFRMARSKAYLFGGVEIRWSCEQGVLPEGSEVPDKAVFHFPGGLKDYLQATMGK 301

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
              ++ EIF GKTEK  +  G++EWAI W   +P++ SYCNTI T EGGTHE+GLR+ALT
Sbjct: 302 EFTVTREIFAGKTEK-TSGHGSMEWAITWYGGDPQVHSYCNTIPTPEGGTHEAGLRIALT 360

Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +G+K YAELTQNKRA  I +DD+MISAVG+LSVFIREPEF GQTK KL +++AQR VENA
Sbjct: 361 KGLKAYAELTQNKRAAQITTDDVMISAVGMLSVFIREPEFVGQTKDKLATVEAQRIVENA 420

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
           LRDPFDHYL  NP E+ KLL+WVIER+EERLRRRK++EVNRKTA+RKLRLPGKLADCSQN
Sbjct: 421 LRDPFDHYLADNPNESAKLLDWVIERAEERLRRRKEKEVNRKTAVRKLRLPGKLADCSQN 480

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
            A G ELFIVEGDSAGGSAKQARNR+NQA+LPLRGKILNVASAG EK+  NQQ+ DL+QA
Sbjct: 481 TAEGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLGANQQLADLIQA 540

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           LGC TRS+YR+EDLRYE++I+MTDADVDGAHIASLL+TFFYQEM +L+   HLFL  PPL
Sbjct: 541 LGCGTRSKYRDEDLRYERIIVMTDADVDGAHIASLLITFFYQEMPELVRGGHLFLAVPPL 600

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           ++ITQG+KS YA D+ H+ ++++   K GK K+EISRFKGLGEM+ +QLKET MD +KRT
Sbjct: 601 YKITQGSKSAYARDDNHRAELMQTEFK-GKAKVEISRFKGLGEMMPAQLKETTMDPSKRT 659

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           LL+V I++     + T+ +++ LMGTK + RF+FIQERA+F +++ 
Sbjct: 660 LLKVLIDEV--DFEGTRSAVDDLMGTKPEARFRFIQERAAFAENLD 703


>gi|323694887|ref|ZP_08109037.1| DNA gyrase subunit B [Clostridium symbiosum WAL-14673]
 gi|323500977|gb|EGB16889.1| DNA gyrase subunit B [Clostridium symbiosum WAL-14673]
          Length = 637

 Score =  621 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 252/649 (38%), Positives = 380/649 (58%), Gaps = 20/649 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y A  I+ILEGLE VR RPGMYIG T  + LHHL  E++DNA+DE +AG+ + IEV +
Sbjct: 3   SEYSADQIQILEGLEAVRKRPGMYIGSTSMRGLHHLVYEIVDNAVDEALAGFCDTIEVQI 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +  +TV D+GRGIPV+   K      +E++ T LHAGGKF    Y++SGGLHGVG SV
Sbjct: 63  NEDNSITVEDDGRGIPVDIQKKA-GIPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGASV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKA 220
           VNALS+ L V + ++  ++ Q++ RG  + PL  + +   +K GT++TF PD  IF +  
Sbjct: 122 VNALSEWLEVEIYKEGKVYKQRYERGKVMCPLRVEGECPPDKHGTKVTFLPDKDIFEETV 181

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +D   L    +  A+L+  ++     D++        +++ F++ GG+K ++    ++ 
Sbjct: 182 -YDYDTLKIRLRETAFLTKNLRIVLRDDRD------NKKEKVFHYEGGIKEFVTYLNKSN 234

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
             + + +   +  K+  +   VE A+   +     I ++ N I T EGGTH +G + ALT
Sbjct: 235 EKLYAPVIYCEGTKEQVY---VEVAVQHNDSYTENIYTFVNNINTPEGGTHLTGFKNALT 291

Query: 340 RGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           +    YA   +  +        +D+      I+SV I EP+F GQTK KL + +A+  V+
Sbjct: 292 KTFNDYARKNKLLKDNEPALSGEDIREGITAIISVKIEEPQFEGQTKQKLGNSEARTAVD 351

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
             + +   ++L QNP  A  + E  ++ +      R+ +    RK+ +  + LPGKLADC
Sbjct: 352 AVVSEQLTYFLEQNPSVAKIICEKSILAKRARDAARKAREMTRRKSVLDGMALPGKLADC 411

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S   A   E++IVEGDSAGGSAK+ARN+SNQA+LPLRGKILNV  A  ++I  N +I  +
Sbjct: 412 SDKNAENCEIYIVEGDSAGGSAKEARNKSNQAILPLRGKILNVEKARLDRIYGNAEIRAM 471

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A G      +  E LRY K+IIMTDADVDGAHI++LLLTF Y+ M +LI Q H++L  
Sbjct: 472 ITAFGTGIHEDFDIEKLRYNKIIIMTDADVDGAHISTLLLTFLYRFMPELIRQGHVYLAQ 531

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+++ +  +  YA+ +E    IL E  +    K  I R+KGLGEM A QL ET MD  
Sbjct: 532 PPLYKVEKNKRVWYAYSDEELNSILMEIGRDTNNK--IQRYKGLGEMDAEQLWETTMDPE 589

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +R LLRV I+    +  +   +   LMG + + R +FI+  A ++ ++ 
Sbjct: 590 RRILLRVMIDN--ETASEVDLTFATLMGDQVEPRREFIEANAKYVQNLD 636


>gi|323486745|ref|ZP_08092064.1| hypothetical protein HMPREF9474_03815 [Clostridium symbiosum
           WAL-14163]
 gi|323399884|gb|EGA92263.1| hypothetical protein HMPREF9474_03815 [Clostridium symbiosum
           WAL-14163]
          Length = 637

 Score =  621 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 252/649 (38%), Positives = 379/649 (58%), Gaps = 20/649 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y A  I+ILEGLE VR RPGMYIG T  + LHHL  E++DNA+DE +AG+ + IEV +
Sbjct: 3   SEYSADQIQILEGLEAVRKRPGMYIGSTSMRGLHHLVYEIVDNAVDEALAGFCDTIEVQI 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +  +TV D+GRGIPV+   K      +E++ T LHAGGKF    Y++SGGLHGVG SV
Sbjct: 63  NEDNSITVEDDGRGIPVDIQKKA-GIPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGASV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKA 220
           VNALS+ L V + ++  ++ Q++ RG  + PL    +   +K GT++TF PD  IF +  
Sbjct: 122 VNALSEWLEVEIYKEGKVYKQRYERGKVMCPLRVDGECPPDKHGTKVTFLPDKDIFEETV 181

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +D   L    +  A+L+  ++     D++        +++ F++ GG+K ++    ++ 
Sbjct: 182 -YDYDTLKIRLRETAFLTKNLRIVLRDDRD------NKKEKVFHYEGGIKEFVTYLNKSN 234

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
             + + +   +  K+  +   VE A+   +     I ++ N I T EGGTH +G + ALT
Sbjct: 235 EKLYAPVIYCEGTKEQVY---VEVAVQHNDSYTENIYTFVNNINTPEGGTHLTGFKNALT 291

Query: 340 RGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           +    YA   +  +        +D+      I+SV I EP+F GQTK KL + +A+  V+
Sbjct: 292 KTFNDYARKNKLLKDNEPALSGEDIREGITAIISVKIEEPQFEGQTKQKLGNSEARTAVD 351

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
             + +   ++L QNP  A  + E  ++ +      R+ +    RK+ +  + LPGKLADC
Sbjct: 352 AVVSEQLTYFLEQNPSVAKIICEKSILAKRARDAARKAREMTRRKSVLDGMALPGKLADC 411

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S   A   E++IVEGDSAGGSAK+ARN+SNQA+LPLRGKILNV  A  ++I  N +I  +
Sbjct: 412 SDKNAENCEIYIVEGDSAGGSAKEARNKSNQAILPLRGKILNVEKARLDRIYGNAEIRAM 471

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A G      +  E LRY K+IIMTDADVDGAHI++LLLTF Y+ M +LI Q H++L  
Sbjct: 472 ITAFGTGIHEDFDIEKLRYNKIIIMTDADVDGAHISTLLLTFLYRFMPELIRQGHVYLAQ 531

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+++ +  +  YA+ +E    IL E  +    K  I R+KGLGEM A QL ET MD  
Sbjct: 532 PPLYKVEKNKRVWYAYSDEELNSILMEIGRDTNNK--IQRYKGLGEMDAEQLWETTMDPE 589

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +R LLRV I+    +  +   +   LMG + + R +FI+  A ++ ++ 
Sbjct: 590 RRILLRVMIDN--ETASEVDLTFATLMGDQVEPRREFIEANAKYVQNLD 636


>gi|317495092|ref|ZP_07953463.1| DNA gyrase, subunit B [Gemella moribillum M424]
 gi|316914799|gb|EFV36274.1| DNA gyrase, subunit B [Gemella moribillum M424]
          Length = 643

 Score =  621 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 258/654 (39%), Positives = 372/654 (56%), Gaps = 20/654 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              +     Y+A  I++LEGLE VR+RPGMYIG T  + LHHL  E++DN++DE +AGY 
Sbjct: 6   MVEKKQIQEYNADQIQVLEGLEAVRVRPGMYIGSTSSRGLHHLVWEIVDNSIDEALAGYC 65

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           N I V+++ + ++ V DNGRGIP++   +   K  LE+ILT LHAGGKF    Y++SGGL
Sbjct: 66  NTITVAIEKDNWIRVEDNGRGIPIDIQEQ-TGKPALEVILTVLHAGGKFGGGGYKVSGGL 124

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS  L   V R   I S KF RG  +  +    +  +K GT + F+ DP+
Sbjct: 125 HGVGASVVNALSTNLEAYVHRDGKIHSMKFERGEVVQGITVIGET-DKTGTTVRFKADPE 183

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   ++   L    +  A+L+  +      ++E  EK      E+F + GGL  Y++
Sbjct: 184 IFQETTVYEYDILRSRIRELAFLNKGITIVLKDERENQEKE-----EDFCYEGGLLEYVE 238

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESG 333
              EN+  +  E      E +G     VE ++ +         SY N I T EGGTHESG
Sbjct: 239 MLNENKDALH-EAIYVHGEMEG---KEVEISMQYNTGYSSNILSYANNINTHEGGTHESG 294

Query: 334 LRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
            + ALTR I  Y +  +  K   ++  DD+    V I+S+    P+F GQTKTKL + + 
Sbjct: 295 FKTALTRIINAYGKKNKLIKEKETLTGDDVREGLVAIISIKHPNPQFEGQTKTKLGNSEM 354

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
                    +  D +L++NP  A  ++E  ++ S  R+  +K RE   RK A+    LPG
Sbjct: 355 STITNKLFSEELDRFLLENPKVAKIIVEKGLQASRARIAAKKARESTRRKNALEFTNLPG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS   A   ELF+VEGDSAGGSAK  R+   QA+LPL+GKILNV     +K+ ++ 
Sbjct: 415 KLADCSSKDAAECELFLVEGDSAGGSAKLGRDSKFQAILPLKGKILNVEKVRIDKVLSSD 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  L+ A+G         + LRY K++IMTDADVDG+HI +LLLTFF++ M +LI+  +
Sbjct: 475 EIRSLITAVGMGIGETLNMDKLRYHKIVIMTDADVDGSHIRTLLLTFFFRYMRELIDAGY 534

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPL+ +  G K  Y H EE  ++ +EEF   G  K  + R+KGLGEM A +L +T
Sbjct: 535 VYIARPPLYGLKVGKKEYYCHTEEELKQHIEEFA--GDKKYAVQRYKGLGEMNAEELWDT 592

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   R + +V I       +    + + LMG K + R KFI+E A  + ++ 
Sbjct: 593 TMDPKHRLMYQVSIGD----AQRADAAFDTLMGEKVEPRRKFIEENALNVINLD 642


>gi|260584261|ref|ZP_05852008.1| DNA gyrase, B subunit [Granulicatella elegans ATCC 700633]
 gi|260157779|gb|EEW92848.1| DNA gyrase, B subunit [Granulicatella elegans ATCC 700633]
          Length = 645

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 256/656 (39%), Positives = 379/656 (57%), Gaps = 22/656 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
             +  +  YDAS I++LEGLE VR RPGMYIG T    LHHL  E++DN++DE +AG+A 
Sbjct: 5   NKEVLAAQYDASQIQVLEGLEAVRKRPGMYIGSTSSAGLHHLVWEIVDNSIDEALAGFAT 64

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            IE+ +     + V D+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLH
Sbjct: 65  HIEIEITPENHIRVTDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLH 123

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS +L V V +   I+ Q + RG  L  L+   +     GT + F PDP+I
Sbjct: 124 GVGASVVNALSTDLTVQVFKDGNIYEQSYKRGAVLEDLKIVGQTEKH-GTSVYFVPDPEI 182

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   +D  +L    +  A+L+  +K   +  +        P  + FY+ GG+K+Y++ 
Sbjct: 183 FQETTVYDFEKLANRVRELAFLNKGLKLTITDLR-----VEEPVVKTFYYEGGIKSYVEH 237

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGL 334
             +++ ++  E    + E+ G     VE A+ +         S+ N I T EGGTHESG+
Sbjct: 238 LNKSKQVLFEEPIYVEGEQDGIQ---VEVAMQYTSGYHTNLLSFTNNIHTYEGGTHESGM 294

Query: 335 RVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           + ALTR I  YA   +  +     +  +D+      ++S+   +P+F GQTKTKL + +A
Sbjct: 295 KTALTRVINDYARRQKLMKENEEKLSGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSEA 354

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
           +   +      FD +L++NP  A K++E  I  S+ RL  ++ RE   +K+ +    LPG
Sbjct: 355 RTITDRLFATHFDKFLMENPQVARKIVEKGILASKARLAAKRAREVTRKKSGLEISNLPG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS N    +E+FIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  +KI  N 
Sbjct: 415 KLADCSSNDPSVSEIFIVEGDSAGGSAKQGRSRHFQAILPIRGKILNVEKASLDKILAND 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  L  A+G      +     RY K++IMTDADVDGAHI +LL+T FY+ M  ++E  +
Sbjct: 475 EIRSLFTAMGTGFGGDFDLSKARYHKLVIMTDADVDGAHIRTLLITLFYRYMRPVVEAGY 534

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPL+++ QG +  Y  ++E  +  L+E       K +ISR+KGLGEM A QL ET
Sbjct: 535 VYIAQPPLYKLKQGKQEFYIQNDEELEAKLKELPAS--PKPQISRYKGLGEMDAEQLWET 592

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685
            M+   R++L+V +        +    ++ LMG K + R +FI+  + FID  D+ 
Sbjct: 593 TMNPQNRSMLQVTVED----AAEADQVLDMLMGDKVEPRREFIEANSKFIDVNDLD 644


>gi|317478438|ref|ZP_07937599.1| DNA gyrase, subunit B [Bacteroides sp. 4_1_36]
 gi|316905397|gb|EFV27190.1| DNA gyrase, subunit B [Bacteroides sp. 4_1_36]
          Length = 653

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 258/654 (39%), Positives = 383/654 (58%), Gaps = 22/654 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y A +I++LEGLE VR RP MYIG    K LHHL  EV+DN++DE +AGY + IEV+++
Sbjct: 12  SYSAENIQVLEGLEAVRKRPAMYIGDISSKGLHHLVYEVVDNSIDEALAGYCDHIEVTIN 71

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV DNGRGIPV+ H K   KS LE+++T LHAGGKFD  +Y++SGGLHGVG+S V
Sbjct: 72  EDNSITVQDNGRGIPVDYHEK-EKKSALEVVMTVLHAGGKFDKGSYKVSGGLHGVGVSCV 130

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  +   V R   I+ Q++S G PL  +++     +  GTR  F PD  IF +   +
Sbjct: 131 NALSTHMTTQVFRNGKIYQQEYSCGHPLYSVKEVG-TTDITGTRQQFWPDGTIFTETV-Y 188

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L    +  AYL+  +K   +  +   E+    + E FY   GLK +++    +R  
Sbjct: 189 NYDILATRMRELAYLNAGIKISLTDLRVKDEEGNAKK-EIFYSEEGLKEFVRYVDSSREH 247

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
             +++    TEK+GT    VE AI +       + SY N I T EGGTH +G R ALTR 
Sbjct: 248 FMNDVIYINTEKQGTP---VEVAIMYNTSYNENVHSYVNNINTIEGGTHLAGFRRALTRT 304

Query: 342 IKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +KKYAE  +   K  + I  DD       ++S+ + EP+F GQTKTKL + +    V+ A
Sbjct: 305 LKKYAEDNKMLEKAKVEIAGDDFREGLTAVISIKVAEPQFEGQTKTKLGNNEVMGAVDQA 364

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458
           + +   +YL ++P EA  +++ VI  ++ R+  RK RE  ++ + +    +PGKLADCS 
Sbjct: 365 VGEALTYYLEEHPKEAKLIVDKVILAAQARIAARKARESVQRKSPMSGGGMPGKLADCSS 424

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 ELF+VEGDSAGGSAKQ RNR+ QA+LPLRGKILNV  A   K   + ++ +++Q
Sbjct: 425 KDPEECELFLVEGDSAGGSAKQGRNRAFQAILPLRGKILNVEKAMWHKAFESDEVNNIIQ 484

Query: 519 ALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           ALG R         +   + LRY+K+IIMTDADVDG+HI +L++T F++    +I+Q  L
Sbjct: 485 ALGIRFGVDGEDSKEANIDKLRYKKIIIMTDADVDGSHIDTLIMTLFFRYFPQVIQQGCL 544

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++ +PPL+  T+G    Y   ++ +QK ++ +    +  +   R+KGLGEM   QL ET 
Sbjct: 545 YIATPPLYLCTKGKAKEYCWTDQQRQKFIDTYGGGSENAVHTQRYKGLGEMNPEQLWETT 604

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           M+   R L +V +     +  +     + LMG     R  FI++ A++  ++  
Sbjct: 605 MNPENRMLKQVHLE----NAAEADYIFSMLMGEDVGPRRDFIEKNATYA-NIDA 653


>gi|168181121|ref|ZP_02615785.1| DNA gyrase, B subunit [Clostridium botulinum NCTC 2916]
 gi|226947228|ref|YP_002802319.1| DNA gyrase subunit B [Clostridium botulinum A2 str. Kyoto]
 gi|182668169|gb|EDT80148.1| DNA gyrase, B subunit [Clostridium botulinum NCTC 2916]
 gi|226844613|gb|ACO87279.1| DNA gyrase, B subunit [Clostridium botulinum A2 str. Kyoto]
          Length = 637

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 254/653 (38%), Positives = 373/653 (57%), Gaps = 22/653 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           +Q     YD S I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AG+   
Sbjct: 2   SQENKQVYDESQIQVLEGLEAVRKRPGMYIGSTSLRGLHHLVYEIVDNSIDEALAGFCTH 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV +  +  +TVVD+GRG+PV  H K   K  +E+I+T LHAGGKF    Y++SGGLHG
Sbjct: 62  IEVFIHKDNSITVVDDGRGMPVGMHSKV-KKPAVEVIMTILHAGGKFGGGGYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS++  V V R+  I+ QKF RGI  + L+      +  GT+I F+PD +IF
Sbjct: 121 VGASVVNALSEQCEVEVRREGHIWKQKFERGITKTGLDIVGDTEDH-GTKIYFKPDIEIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   F+   L    +  A+L+  +K   + ++         +KE F++ GGL++++   
Sbjct: 180 DEL-EFEYDTLAHRLRELAFLNKGIKISLTDER-------YDKKEMFHYEGGLRSFVLYL 231

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
             N+  +  +       K G     VE A+ + +     I S+ N I T EGGTH +G +
Sbjct: 232 NRNKEKLHQQPIYVDENKDG---CIVEIAMQYNDGYAENIFSFANNIDTIEGGTHLAGFK 288

Query: 336 VALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR I  YA      + I  ++  DD+      ++SV + +P+F GQTKTKL + + +
Sbjct: 289 SALTRVINDYARKFNYLKDIDKNLSGDDVREGLTAVISVKLTDPQFEGQTKTKLGNGEVR 348

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
             V+  +      +L +NP     ++E  +  S  R   ++ RE   RK+ +    LPGK
Sbjct: 349 GIVDTIVGQSIGSFLEENPNVGKIIIEKGLSASRAREAAKRARELTRRKSILESTSLPGK 408

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L+DCS       E+++VEGDSAGGSAKQ RNR  QA+LPL+GKI+NV     +KI  + +
Sbjct: 409 LSDCSSKDPSLCEIYLVEGDSAGGSAKQGRNREFQAILPLKGKIMNVEKQRLDKILASDE 468

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++ A G     ++  + +RY ++IIMTDADVDGAHI +LLLTFFY+ M +LIE+ H+
Sbjct: 469 IRAMITAFGAGIGKEFDIDKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMKELIEEGHV 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL+RI +  K +Y + +      L E          I R+KGLGEM   QL ET 
Sbjct: 529 YIAQPPLYRIYKAKKEIYVYSDPELDAALLELGGKDTNT-NIQRYKGLGEMNPEQLWETT 587

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           MD   RTLL+V +   +    +  +    LMGTK + R  FI+  A  + ++ 
Sbjct: 588 MDPEHRTLLQVTVEDAM----EADEIFTILMGTKVEPRRDFIESNADKVVNLD 636


>gi|163740909|ref|ZP_02148302.1| DNA topoisomerase IV subunit B [Phaeobacter gallaeciensis 2.10]
 gi|161385900|gb|EDQ10276.1| DNA topoisomerase IV subunit B [Phaeobacter gallaeciensis 2.10]
          Length = 652

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 346/652 (53%), Positives = 449/652 (68%), Gaps = 10/652 (1%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           +  ASD YDASSI +LEGLEPVR RPGMYIGGTDE+ALHH+ +E++DN+MDE +AG+AN 
Sbjct: 7   STPASDTYDASSIEVLEGLEPVRQRPGMYIGGTDERALHHMVAEILDNSMDEAVAGHANR 66

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV+L  +  +T+ DNGRGIP++ HPKFP+KS LE+IL TLHAGGKF    Y+ SGGLHG
Sbjct: 67  IEVTLHADYAVTISDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQTSGGLHG 126

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALSD + V VA+   +F Q+FSRGIP  P+EK     NKRGT +TF  D +IF
Sbjct: 127 VGSSVVNALSDSMVVQVAKNKELFEQRFSRGIPQGPVEKIGAAPNKRGTFVTFHADEQIF 186

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
           G    F   RL  + +SKAYL   V+  W  + +  E    P +  F+FPGGLK YL   
Sbjct: 187 GS-HRFKPKRLFTLVRSKAYLFSGVEIRWKSEIDDNE---TPTEATFHFPGGLKDYLTEV 242

Query: 277 LENRSLISSEIFTGKTE--KKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESG 333
           L   S+ + + F GK E  +K    G VEWAI W    +    SYCNT+ T EGGTH +G
Sbjct: 243 LGKSSVYADQPFAGKVEFREKFNAPGYVEWAINWTPSRDGFTQSYCNTVPTPEGGTHVAG 302

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
              A+ +GIK Y EL  NK+A  I  DDLM     ++S FI +P F GQTK +L +  A 
Sbjct: 303 FWAAILKGIKAYGELVGNKKAGQITRDDLMAGGCALVSCFIADPAFVGQTKDRLSTEIAA 362

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
           + VEN++RD FD++L  +   A  +L++++ R+EERLRR++++E  RK+A +KLRLPGKL
Sbjct: 363 KMVENSVRDHFDNWLAADTKSAGAILDFLVLRAEERLRRKQEKETQRKSATKKLRLPGKL 422

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
            DC+     GTELFIVEGDSAGGS K ARNR NQA+LPL+GKILNV  A S KI  N +I
Sbjct: 423 TDCTSKDRTGTELFIVEGDSAGGSGKGARNRVNQALLPLKGKILNVLGAASNKIGTNAEI 482

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            DL +ALG  T +++  +DLRY+K+IIMTDADVDGAHIASLL+TFF+ +M  LI+  HL+
Sbjct: 483 RDLCEALGVGTGTKFNLDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDGGHLY 542

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           L  PPLFR+TQG + VY  DE  +   LE+    GKGKI++SRFKGLGEM A  LKET M
Sbjct: 543 LACPPLFRLTQGARRVYCLDEAERDLWLEK-GLGGKGKIDVSRFKGLGEMDAKDLKETTM 601

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D   R L+RV I++D     +T + + +LMG K + R+++IQE A F++++ 
Sbjct: 602 DPTTRKLIRVTIDEDE--PGETSELVEQLMGKKPELRYQYIQENAKFVEELD 651


>gi|254476308|ref|ZP_05089694.1| DNA topoisomerase IV, B subunit [Ruegeria sp. R11]
 gi|214030551|gb|EEB71386.1| DNA topoisomerase IV, B subunit [Ruegeria sp. R11]
          Length = 652

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 345/652 (52%), Positives = 446/652 (68%), Gaps = 10/652 (1%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           +  A+D YDASSI +LEGLEPVR RPGMYIGGTDE+ALHH+ +E++DN+MDE +AG+AN 
Sbjct: 7   STPAADTYDASSIEVLEGLEPVRQRPGMYIGGTDERALHHMVAEILDNSMDEAVAGHANR 66

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV L  +  +T+ DNGRGIP++ HPKFP+KS LE+IL TLHAGGKF    Y+ SGGLHG
Sbjct: 67  IEVELHADYAVTIRDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQTSGGLHG 126

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALSD + V VA+   +F Q+FSRGIPL  +EK     N+RGT +TF  D +IF
Sbjct: 127 VGSSVVNALSDSMVVQVAKNKELFEQRFSRGIPLGGVEKVGAAPNRRGTSVTFHADEQIF 186

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
           G    F   RL  + +SKAYL   V+  W   K   +    P +  F+FPGGL+ YL   
Sbjct: 187 GS-HRFKPKRLFTLVRSKAYLFSGVEIRW---KSHIDDGETPTEATFHFPGGLRDYLTEV 242

Query: 277 LENRSLISSEIFTGKTE--KKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESG 333
           L   S+ +   F GK E  +K    G VEWAI W    +    SYCNT+ T EGGTH +G
Sbjct: 243 LGKSSVYADVPFAGKVEFREKFGEPGYVEWAINWTPSRDGFTQSYCNTVPTPEGGTHVTG 302

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
              A+ +GIK Y EL  NK+A  I  DDLM     ++S FI +P F GQTK +L +  A 
Sbjct: 303 FWAAILKGIKAYGELVNNKKAAQITRDDLMTGGCALVSCFIADPAFVGQTKDRLSTEAAA 362

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
           + VEN++RD FD++L  +   A  +L+++I R+EERLRR++++E  RKTA +KLRLPGKL
Sbjct: 363 KMVENSVRDHFDNWLAADTKSAGAILDFLILRAEERLRRKQEKETQRKTATKKLRLPGKL 422

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
            DC+     GTELFIVEGDSAGGS K ARNR NQA+LPL+GKILNV  A S K+ +N +I
Sbjct: 423 TDCTSKDRSGTELFIVEGDSAGGSGKGARNRVNQALLPLKGKILNVLGAASGKLGSNAEI 482

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            DL +ALG    +++  +DLRY+K+IIMTDADVDGAHIASLL+TFF+ +M  LI+  HL+
Sbjct: 483 RDLCEALGVGLGTKFNLDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDGGHLY 542

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           L  PPLFR+TQG + VY  DE  +   LE+    GKGKI++SRFKGLGEM A  LKET M
Sbjct: 543 LACPPLFRLTQGARRVYCLDEAERDMWLEK-GLGGKGKIDVSRFKGLGEMDAKDLKETTM 601

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D   R L+RV I++D     +T D + +LMG K + RF++IQE A F++++ 
Sbjct: 602 DPKTRKLIRVTIDEDE--PGETGDLVERLMGKKPELRFQYIQENAKFVEELD 651


>gi|113954544|ref|YP_729329.1| DNA gyrase subunit B [Synechococcus sp. CC9311]
 gi|113881895|gb|ABI46853.1| DNA gyrase, B subunit [Synechococcus sp. CC9311]
          Length = 655

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 269/658 (40%), Positives = 382/658 (58%), Gaps = 20/658 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
                    Y A  I++LEGLEPVR RPGMYIG T  + LHHL  EV+DNA+DE +AG+ 
Sbjct: 2   SEAAKVQAAYGAEQIQVLEGLEPVRKRPGMYIGTTGPRGLHHLVYEVVDNAVDEALAGHC 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           N I V L  +G   V DNGRGIP + HP+   KS LE +LT LHAGGKF    Y++SGGL
Sbjct: 62  NEITVVLGEDGSAFVSDNGRGIPTDVHPR-TGKSALETVLTVLHAGGKFGAGGYKVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE---KVRNKRGTRITFRP 211
           HGVG+SVVNALS+ + VTV RQ  +  Q+F RG  +  L  +    + +   GT + F+P
Sbjct: 121 HGVGVSVVNALSEWVEVTVRRQGQVHRQRFERGAAIGSLASEPQPAEEKGLTGTSVCFKP 180

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA-EKYGIPEKEEFYFPGGLK 270
           D +IF     FD + L    +  AYL+G V+  +  +++ A ++ G P +E +++ GG+K
Sbjct: 181 DHQIFTVGIEFDYSTLSARLRELAYLNGGVRIVFRDERQAARDQEGKPREELYFYEGGIK 240

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC--EENPEITSYCNTILTDEGG 328
            Y+      +  +  EI    +EK G    +VE A+ WC    +  I  + N I T +GG
Sbjct: 241 EYVAYMNAEKDPLHPEIIYVNSEKDGV---SVEAALQWCVDAYSDSILGFANNIRTVDGG 297

Query: 329 THESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH  GL+  LTR +  +A+    ++    ++  +++      +LSV + EPEF GQTKTK
Sbjct: 298 THIEGLKTVLTRTLNTFAKKRGKRKEADSNLAGENIREGLTAVLSVKVPEPEFEGQTKTK 357

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           L + + +  V+N + +    YL  NP     +LE  I+        R+ RE V RK+ + 
Sbjct: 358 LGNTEVRGIVDNLVGESLSQYLEFNPGVIDMILEKAIQAFNAAEAARRARELVRRKSVLE 417

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILN+      
Sbjct: 418 SSTLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDA 477

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           KI  N +I  L+ ALG   + +  +   LRY +V+IMTDADVDGAHI +L+LTFFY+   
Sbjct: 478 KIYKNTEIQALITALGLGIKGEDFDVKNLRYHRVVIMTDADVDGAHIRTLILTFFYRYQK 537

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
           +L+E  ++++  PPL+++ +G    Y ++E+  QK L  F +  K    I RFKGLGEM+
Sbjct: 538 ELVEGGYIYIACPPLYKVERGKNHTYCYNEQQLQKTLAGFGE--KANYNIQRFKGLGEMM 595

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
             QL ET MD + R + RVE+   L    +       LMG K   R +FI+  ++ +D
Sbjct: 596 PKQLWETTMDPSTRMMKRVEVQDAL----EADRIFTILMGDKVAPRREFIETHSADLD 649


>gi|163848553|ref|YP_001636597.1| DNA gyrase subunit B [Chloroflexus aurantiacus J-10-fl]
 gi|222526487|ref|YP_002570958.1| DNA gyrase subunit B [Chloroflexus sp. Y-400-fl]
 gi|163669842|gb|ABY36208.1| DNA gyrase, B subunit [Chloroflexus aurantiacus J-10-fl]
 gi|222450366|gb|ACM54632.1| DNA gyrase, B subunit [Chloroflexus sp. Y-400-fl]
          Length = 636

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 246/647 (38%), Positives = 368/647 (56%), Gaps = 23/647 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            YD S I++LEG+E VR RPGMYIG TD   LH +  EV+DN++DEV+AG A  + V++ 
Sbjct: 8   TYDESQIQVLEGMEAVRKRPGMYIGPTDINGLHTMVREVVDNSVDEVMAGRATSVSVTIH 67

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G +TV D+G GIPV  HPK    STL +++T LHAGGKF +  Y++S GLHGVG+S V
Sbjct: 68  RDGSVTVSDDGSGIPVGIHPK-EGISTLTLVMTRLHAGGKFGSGGYKVSSGLHGVGVSAV 126

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  + V V R    + Q++  G+P++ +   E   ++ GT   F PD  I      +
Sbjct: 127 NALSAYMRVDVYRNGRHYYQEYRAGVPVTDVIDLEPT-DRHGTTTRFLPDTSIIQTL-DY 184

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L +  +  +YL+  ++  +  ++   E         FYF GG+ +Y++   + +++
Sbjct: 185 NFDTLAQRFREMSYLNKGLRFKFVDERTNRELN-------FYFEGGIVSYVRHLNKEKTV 237

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVALTR 340
           +  + F  +          VE A+ + +        ++ N I   +GG+H SG R ALTR
Sbjct: 238 LHRQPFYVERIVDDVM---VEVALQYTDSFDTDNVYTFANNINNADGGSHLSGFRTALTR 294

Query: 341 GIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  YA      +    ++  DD+      ++SV +++P+F+ QTK KLVS +A   V  
Sbjct: 295 VINNYARAKGLLKDNESNLTGDDVREGLTAVISVKLKDPQFSSQTKEKLVSPEAASAVAT 354

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
              D F  +L +NP EA +++E  I  +  RL  +K RE  RK+A+    LPGKLADCS 
Sbjct: 355 VFSDAFSAWLDENPTEARRIIEKAISAARTRLAVQKVRETARKSAMEGFSLPGKLADCSD 414

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 EL+IVEGDSAGG+AKQ R+R  QA+LPLRGKILNV  +  +++ +N ++  L+ 
Sbjct: 415 PNPARCELYIVEGDSAGGTAKQGRDRRFQAILPLRGKILNVEKSRLDRMLSNAEVRALIT 474

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+G     Q+    LRY ++ +MTDADVDG+HI +LLLTFF++ M  LI   HLF+  PP
Sbjct: 475 AIGTSIGDQFDLSKLRYHRIFLMTDADVDGSHIRTLLLTFFFRHMRPLITNGHLFIAQPP 534

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+RI  G + VY + +  +   L +       K+EI R+KGLGEM A QL ET M+   R
Sbjct: 535 LYRIKHGREQVYTYSDAERDAYLSKLPP--GTKVEIQRYKGLGEMNAEQLWETTMNPQNR 592

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +L+V +           ++   LMG     R +FIQ  A+ + ++ 
Sbjct: 593 VILQVTLED----AARADETFTMLMGDLVPPRRRFIQTHANEVVELD 635


>gi|241889819|ref|ZP_04777117.1| DNA gyrase, B subunit [Gemella haemolysans ATCC 10379]
 gi|241863441|gb|EER67825.1| DNA gyrase, B subunit [Gemella haemolysans ATCC 10379]
          Length = 638

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 259/654 (39%), Positives = 368/654 (56%), Gaps = 20/654 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
                 +  Y+A  I++LEGLE VR+RPGMYIG T  K LHHL  E++DN++DE +AGY 
Sbjct: 1   MVENKKTQEYNADQIQVLEGLEAVRVRPGMYIGSTSSKGLHHLVWEIVDNSIDEALAGYC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           N I V+++   ++ V DNGRGIPV+   +   K  LE+ILT LHAGGKF    Y++SGGL
Sbjct: 61  NTITVAIEEGNWIRVEDNGRGIPVDIQEQ-TGKPALEVILTVLHAGGKFGGGGYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS  L  +V R   I+S KF RG  +  +       ++ GT I F+ DP+
Sbjct: 120 HGVGASVVNALSTNLEASVHRDGKIYSMKFERGDVVQGITVIGDT-DRTGTTIRFKADPE 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   ++   L    +  A+L+  +      ++   EK      E F + GGL  Y++
Sbjct: 179 IFQETTVYEYDILRTRIRELAFLNKGITIILKDERIGQEKE-----ETFCYEGGLLEYVE 233

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESG 333
              EN+  +  E      E  G     VE ++ +         SY N I T EGGTHESG
Sbjct: 234 MLNENKDALH-EAIYVHGEMDG---KEVEISMQYNTGYSNNVLSYANNINTHEGGTHESG 289

Query: 334 LRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
            + ALTR I  Y +  +  K   S+  DD+    V I+S+    P+F GQTKTKL + + 
Sbjct: 290 FKTALTRIINSYGKKNKLIKDKESLTGDDVREGLVAIISIKHPNPQFEGQTKTKLGNSEM 349

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
                    +  D +L++NP  A  ++E  ++ S  R+  +K RE   RK A+    LPG
Sbjct: 350 STITNKLFSEELDRFLLENPKTAKIIVEKGLQASRARIAAKKARESTRRKNALEFTNLPG 409

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS   A   ELF+VEGDSAGGSAK  RN   QA+LPL+GKILNV     +K+  N 
Sbjct: 410 KLADCSSKDAAECELFLVEGDSAGGSAKLGRNSKFQAILPLKGKILNVEKVRIDKVLAND 469

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++  L+ A+G         + LRY K++IMTDADVDG+HI +LLLTFF++ M +LI+  +
Sbjct: 470 EVRSLITAIGMGIGETLNIDKLRYHKIVIMTDADVDGSHIRTLLLTFFFRYMRELIDAGY 529

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPL+ +  G K  Y H EE  ++ +EE    G  K  + R+KGLGEM A +L +T
Sbjct: 530 VYIARPPLYGLKVGKKEFYCHTEEELKQNIEEHA--GDKKYTVQRYKGLGEMNAEELWDT 587

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   R + +V +N      +    + + LMG K + R KFI++ A  + ++ 
Sbjct: 588 TMDPEHRLMYQVSVND----AQRADAAFDTLMGEKVEPRRKFIEDNALNVINLD 637


>gi|224536623|ref|ZP_03677162.1| hypothetical protein BACCELL_01499 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521714|gb|EEF90819.1| hypothetical protein BACCELL_01499 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 653

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 256/654 (39%), Positives = 381/654 (58%), Gaps = 22/654 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y A +I++LEGLE VR RP MYIG    K LHHL  EV+DN++DE +AGY + IEV+++
Sbjct: 12  SYSAENIQVLEGLEAVRKRPAMYIGDISTKGLHHLVYEVVDNSIDEALAGYCDHIEVTIN 71

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV DNGRGIPV+ H K   KS LE+++T LHAGGKFD  +Y++SGGLHGVG+S V
Sbjct: 72  EDNSITVQDNGRGIPVDFHEK-EKKSALEVVMTVLHAGGKFDKGSYKVSGGLHGVGVSCV 130

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  +   V R   I+ Q++  G PL P+++     +  GTR  F PD  IF +   +
Sbjct: 131 NALSTHMTTQVFRNGKIYQQEYECGHPLYPVKEIG-TSDITGTRQQFWPDNTIFTETV-Y 188

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L    +  AYL+  +K   +  +   E+    + E FY   GLK +++    +R  
Sbjct: 189 NYEILATRMRELAYLNAGIKITLTDLRVKDEENNA-KMEVFYSEEGLKEFVRYIDSSREH 247

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           + +++    TEK+GT    VE AI +       I SY N I T EGGTH +G R ALTR 
Sbjct: 248 LVNDVIYINTEKQGTP---VEVAIMYNTSYNENIHSYVNNINTIEGGTHLAGFRRALTRT 304

Query: 342 IKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +KKYAE  +   K  + I  DD       ++S+ + EP+F GQTKTKL + +    V+ A
Sbjct: 305 LKKYAEDNKMLEKAKVEIAGDDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVMGAVDQA 364

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458
           + +  ++YL ++P EA  +++ VI  ++ R+  RK RE  ++ + +    +PGKLADCS 
Sbjct: 365 VGEALNYYLEEHPKEAKMVVDKVILAAQARVAARKARESVQRKSPMSGGGMPGKLADCSS 424

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 ELF+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A   K   + ++ +++Q
Sbjct: 425 KDPEECELFLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKAMWHKAFESDEVNNIIQ 484

Query: 519 ALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           ALG R         +   + LRY+KVIIMTDADVDG+HI +L++T F++    +I   +L
Sbjct: 485 ALGIRFGVDGEDSKEANIDKLRYKKVIIMTDADVDGSHIDTLIMTLFFRYFPQVIRNGYL 544

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++ +PPL+   +G    Y   ++ +QK ++ +    +  +   R+KGLGEM   QL  T 
Sbjct: 545 YIATPPLYLCKKGKVEEYCWTDQQRQKFIDTYGGGSENAVHTQRYKGLGEMNPEQLWSTT 604

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           M+   R L ++ I     +  +     + LMG     R  FI++ A++  ++  
Sbjct: 605 MNPENRMLKQISIE----NAAEVDYIFSMLMGEDVGPRRDFIEKNATYA-NIDA 653


>gi|190710605|gb|ACE95133.1| gyrase subunit B [Bacillus thuringiensis serovar galleriae]
          Length = 627

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 264/644 (40%), Positives = 379/644 (58%), Gaps = 21/644 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R+  I  QK+ RGIP++ L+      ++ GT   F+PDP+IF +  
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +D   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E    +  K G     VE ++ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGHKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K++E   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF+I QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKIQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            R+LL+  +   +    +  ++   LMG K + R  FIQE A +
Sbjct: 588 VRSLLQASLQDAI----EADETFEILMGDKVEPRRNFIQENAKY 627


>gi|160891431|ref|ZP_02072434.1| hypothetical protein BACUNI_03882 [Bacteroides uniformis ATCC 8492]
 gi|270295441|ref|ZP_06201642.1| DNA gyrase, B subunit [Bacteroides sp. D20]
 gi|156858838|gb|EDO52269.1| hypothetical protein BACUNI_03882 [Bacteroides uniformis ATCC 8492]
 gi|270274688|gb|EFA20549.1| DNA gyrase, B subunit [Bacteroides sp. D20]
          Length = 653

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 258/654 (39%), Positives = 383/654 (58%), Gaps = 22/654 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y A +I++LEGLE VR RP MYIG    K LHHL  EV+DN++DE +AGY + IEV+++
Sbjct: 12  SYSAENIQVLEGLEAVRKRPAMYIGDISSKGLHHLVYEVVDNSIDEALAGYCDHIEVTIN 71

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV DNGRGIPV+ H K   KS LE+++T LHAGGKFD  +Y++SGGLHGVG+S V
Sbjct: 72  EDNSITVQDNGRGIPVDYHEK-EKKSALEVVMTVLHAGGKFDKGSYKVSGGLHGVGVSCV 130

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  +   V R   I+ Q++S G PL  +++     +  GTR  F PD  IF +   +
Sbjct: 131 NALSTHMTTQVFRNGKIYQQEYSCGHPLYSVKEVG-TTDITGTRQQFWPDDTIFTETV-Y 188

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L    +  AYL+  +K   +  +   E+    + E FY   GLK +++    +R  
Sbjct: 189 NYDILATRMRELAYLNAGIKISLTDLRVKDEEGNAKK-EIFYSEEGLKEFVRYVDSSREH 247

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
             +++    TEK+GT    VE AI +       + SY N I T EGGTH +G R ALTR 
Sbjct: 248 FMNDVIYINTEKQGTP---VEVAIMYNTSYNENVHSYVNNINTIEGGTHLAGFRRALTRT 304

Query: 342 IKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +KKYAE  +   K  + I  DD       ++S+ + EP+F GQTKTKL + +    V+ A
Sbjct: 305 LKKYAEDNKMLEKAKVEIAGDDFREGLTAVISIKVAEPQFEGQTKTKLGNNEVMGAVDQA 364

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458
           + +   +YL ++P EA  +++ VI  ++ R+  RK RE  ++ + +    +PGKLADCS 
Sbjct: 365 VGEALTYYLEEHPKEAKLIVDKVILAAQARIAARKARESVQRKSPMSGGGMPGKLADCSS 424

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 ELF+VEGDSAGGSAKQ RNR+ QA+LPLRGKILNV  A   K   + ++ +++Q
Sbjct: 425 KDPEECELFLVEGDSAGGSAKQGRNRAFQAILPLRGKILNVEKAMWHKAFESDEVNNIIQ 484

Query: 519 ALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           ALG R         +   + LRY+K+IIMTDADVDG+HI +L++T F++    +I+Q  L
Sbjct: 485 ALGIRFGVDGEDSKEANIDKLRYKKIIIMTDADVDGSHIDTLIMTLFFRYFPQVIQQGCL 544

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++ +PPL+  T+G    Y   ++ +QK ++ +    +  +   R+KGLGEM   QL ET 
Sbjct: 545 YIATPPLYLCTKGKAKEYCWTDQQRQKFIDTYGGGSENAVHTQRYKGLGEMNPEQLWETT 604

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           M+   R L +V +     +  +     + LMG     R  FI++ A++  ++  
Sbjct: 605 MNPENRMLKQVHLE----NAAEADYIFSMLMGEDVGPRRDFIEKNATYA-NIDA 653


>gi|310639477|ref|YP_003944235.1| DNA gyrase subunit b [Paenibacillus polymyxa SC2]
 gi|309244427|gb|ADO53994.1| DNA gyrase subunit B [Paenibacillus polymyxa SC2]
          Length = 636

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 262/647 (40%), Positives = 379/647 (58%), Gaps = 22/647 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +YDA  I++LEGLE VR RPGMYIG T  K LHHL  EV+DN++DE +AGY N I+V + 
Sbjct: 7   SYDAGEIQVLEGLEAVRKRPGMYIGSTSVKGLHHLVWEVVDNSIDEALAGYCNSIQVVVH 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV DNGRGIPV  H K   KS LE+++T LHAGGKF    Y++SGGLHGVG+SVV
Sbjct: 67  KDNSITVTDNGRGIPVSEHAKM-KKSALEVVMTVLHAGGKFGGGGYKVSGGLHGVGVSVV 125

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS ++ V V R   ++ Q++ RG P   +          GT+ TF PD +IF +   +
Sbjct: 126 NALSSKMIVHVKRDGHVYEQEYHRGAPQYDVRVIGDTEE-TGTQTTFYPDEQIFTETTVY 184

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L    +  A+L+  +    + ++           + F++ GG+  Y+Q   + R  
Sbjct: 185 DYDTLQTRIRELAFLNKGIAISLTDER-------TGASDTFHYEGGISEYVQFLNQKREA 237

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +  +    +  +       VE A+ + +     I S+ N I T EGGTHESG + ALTR 
Sbjct: 238 LHEQPIYVEGSRDMIQ---VEVALQYNDSYTENIYSFANNINTHEGGTHESGFKSALTRI 294

Query: 342 IKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  YA      +    ++  DD+      I+SV I EP+F GQTKTKL + + +  VE+ 
Sbjct: 295 INDYARKNGLIKDNNANLTGDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGIVESL 354

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
             +    +L +NP  + ++++  ++ +  R   RK RE   RK+A+    LPGKLADCS 
Sbjct: 355 FAEKLQEFLEENPSVSRRVVDKSLQAARAREAARKARELTRRKSALEISSLPGKLADCSS 414

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
             A  +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I ++ +I  +V 
Sbjct: 415 KDASISELYIVEGDSAGGSAKQGRDRHFQAILPIRGKILNVEKARLDRILSSDEIRSMVT 474

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+G      +     RY KVIIMTDADVDGAHI +LLLTFFY+ M  +I+  ++++  PP
Sbjct: 475 AMGTGIGDDFDITKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRKIIDAGYIYIAQPP 534

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           LF++ +     YA+ E  + +I++EF ++   K  + R+KGLGEM A+QL ET MD   R
Sbjct: 535 LFKVERNKVVRYANSEAERDEIIKEFGEN--AKYNVQRYKGLGEMNATQLWETTMDPESR 592

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T+L+V ++  +          N LMG   + R  FIQE A ++ ++ 
Sbjct: 593 TMLQVTVSDAM----LADTLFNTLMGDNVEPRRDFIQEHAKYVKNLD 635


>gi|86357804|ref|YP_469696.1| DNA topoisomerase IV subunit B [Rhizobium etli CFN 42]
 gi|86281906|gb|ABC90969.1| DNA topoisomerase IV subunit B protein [Rhizobium etli CFN 42]
          Length = 660

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 438/663 (66%), Positives = 527/663 (79%), Gaps = 6/663 (0%)

Query: 24  KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVID 83
                 P  PA    +A D+Y ASSIR+LEGLEPVRMRPGMYIGGTDEKALHHLF+EVID
Sbjct: 2   TAVPSTPTRPAPVASNA-DDYGASSIRVLEGLEPVRMRPGMYIGGTDEKALHHLFAEVID 60

Query: 84  NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143
           NAMDE +AG+AN IEV LD  G+LTV DNGRGIPVENHP+ P KSTLE+I+T LHAGGKF
Sbjct: 61  NAMDEAVAGHANFIEVHLDLQGYLTVTDNGRGIPVENHPQVPGKSTLEVIMTKLHAGGKF 120

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D   YE SGGLHGVG+SVVNALSD L V VAR   ++ Q+FSRG+P   LE+   V N+R
Sbjct: 121 DGKAYETSGGLHGVGVSVVNALSDFLEVEVARNRKLYRQRFSRGLPQGGLEELGDVHNRR 180

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI-AEKYGIPEKEE 262
           GTR+ F PDP+IFGD   F+AAR+ +M +SKAYL G V+  WSC+  +  E   +P+K  
Sbjct: 181 GTRVRFHPDPQIFGDHMKFEAARVFRMARSKAYLFGGVEIRWSCEPGVLPEGSEVPDKAT 240

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
           F+FPGGLK YLQ  +     ++ EIF GKTEK  +  G++EWAI W   +P++ SYCNTI
Sbjct: 241 FHFPGGLKDYLQATMGKEFTVTREIFAGKTEK-ASGHGSMEWAITWYGGDPQVHSYCNTI 299

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T EGGTHE+GLR+ALT+G+K YAELTQNKRA  I +DD+MISAVG+LSVFIREPEF GQ
Sbjct: 300 PTPEGGTHEAGLRIALTKGLKAYAELTQNKRAAQITTDDVMISAVGMLSVFIREPEFVGQ 359

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK KL +++AQR VENALRDPFDHYL  NP EA KLL+WVIER+EERLRRRK++EVNRKT
Sbjct: 360 TKDKLATVEAQRIVENALRDPFDHYLADNPNEAAKLLDWVIERAEERLRRRKEKEVNRKT 419

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+RKLRLPGKLADCSQN A G ELFIVEGDSAGGSAKQARNR+NQA+LPLRGKILNVASA
Sbjct: 420 AVRKLRLPGKLADCSQNTAEGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASA 479

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
           G EK   NQQ+ DL+QALGC TRS+YR+EDLRYE++I+MTDADVDGAHIASLL+TFFYQE
Sbjct: 480 GREKFGANQQLADLIQALGCGTRSKYRQEDLRYERIIVMTDADVDGAHIASLLITFFYQE 539

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
           M +L+   HLFL  PPL++ITQG KS YA D+ H+ ++++   K GK K+EISRFKGLGE
Sbjct: 540 MPELVRGGHLFLAVPPLYKITQGAKSAYARDDNHRAELMQTEFK-GKAKVEISRFKGLGE 598

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           M+ +QLKET MD  KRTLLRV I++     + T+ +++ LMGTK + RF+FIQERA+F +
Sbjct: 599 MMPAQLKETTMDPAKRTLLRVLIDEV--DFEGTRSAVDDLMGTKPEARFRFIQERAAFAE 656

Query: 683 DVG 685
           ++ 
Sbjct: 657 NLD 659


>gi|329767180|ref|ZP_08258707.1| DNA gyrase subunit B [Gemella haemolysans M341]
 gi|328836847|gb|EGF86494.1| DNA gyrase subunit B [Gemella haemolysans M341]
          Length = 638

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 260/654 (39%), Positives = 370/654 (56%), Gaps = 20/654 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              +     Y+A  I++LEGLE VR+RPGMYIG T  K LHHL  E++DN++DE +AGY 
Sbjct: 1   MVEKKQIQEYNADQIQVLEGLEAVRVRPGMYIGSTSSKGLHHLVWEIVDNSIDEALAGYC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I V+++   ++ V DNGRGIPV+   +   K  LE+ILT LHAGGKF    Y++SGGL
Sbjct: 61  DTITVAIEKGNWIRVEDNGRGIPVDIQEQ-TGKPALEVILTVLHAGGKFGGGGYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS  L  +V R   I + KF RG  +  +       ++ GT I F+ DP+
Sbjct: 120 HGVGASVVNALSTNLEASVHRDGKIHTMKFERGDVVQGITVVGNT-DRTGTTIRFKADPE 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   +D   L    +  A+L+  +      ++E  EK      E FY+ GGL  Y++
Sbjct: 179 IFQETTVYDYDILRTRIRELAFLNKGITIILKDEREGQEKE-----ETFYYEGGLLEYVE 233

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESG 333
              EN+  +  E      E  G     VE ++ +         SY N I T EGGTHESG
Sbjct: 234 MLNENKDALH-EAIYVHGEMDG---KEVEISMQYNTGYSSNVLSYANNINTHEGGTHESG 289

Query: 334 LRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
            + ALTR I  Y +  +  K   S+  DD+    V I+S+    P+F GQTKTKL + + 
Sbjct: 290 FKTALTRIINSYGKKNKLIKDKESLTGDDVREGLVAIISIKHPNPQFEGQTKTKLGNSEM 349

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
                    +  D +L++NP  A  ++E  ++ S  R+  +K RE   RK A+    LPG
Sbjct: 350 STITNKLFSEELDRFLLENPKIAKIIVEKGLQASRARIAAKKARESTRRKNALEFTNLPG 409

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS   A   ELF+VEGDSAGGSAK  RN   QA+LPL+GKILNV     +K+  N 
Sbjct: 410 KLADCSSKDAAECELFLVEGDSAGGSAKLGRNSKFQAILPLKGKILNVEKVRIDKVLAND 469

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++  L+ A+G         + LRY K++IMTDADVDG+HI +LLLTFF++ M +LI++ +
Sbjct: 470 EVRSLITAIGMGIGETLNIDKLRYHKIVIMTDADVDGSHIRTLLLTFFFRYMRELIDEGY 529

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPL+ +  G K  Y H EE  ++ +EE    G  K  + R+KGLGEM A +L +T
Sbjct: 530 VYIARPPLYGLKVGKKEFYCHTEEELKQNIEEHA--GDKKYTVQRYKGLGEMNAEELWDT 587

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   R + +V I+      +    + + LMG K + R KFI++ A  + ++ 
Sbjct: 588 TMDPEHRLMYQVSIDD----AQRADAAFDTLMGEKVEPRRKFIEDNALNVINLD 637


>gi|329964535|ref|ZP_08301589.1| DNA gyrase, B subunit [Bacteroides fluxus YIT 12057]
 gi|328524935|gb|EGF51987.1| DNA gyrase, B subunit [Bacteroides fluxus YIT 12057]
          Length = 657

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 256/664 (38%), Positives = 378/664 (56%), Gaps = 24/664 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
              +  +NY AS+I++LEGLE VR RP MYIG   E  LHHL  EV+DN++DE +AGY +
Sbjct: 5   EKINGENNYSASNIQVLEGLEAVRKRPAMYIGDISENGLHHLVYEVVDNSIDEAMAGYCD 64

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            IEV+++ +  +TV DNGRGIPV+ H K   KS LE+++T LHAGGKFD  +Y++SGGLH
Sbjct: 65  HIEVTINEDNSITVQDNGRGIPVDFHEK-EQKSALEVVMTVLHAGGKFDKGSYKVSGGLH 123

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPK 214
           GVG+S VNALS  +   V R   I+ Q++  G PL  +++         GT+ TF PD  
Sbjct: 124 GVGVSCVNALSKHMTTQVFRNGKIYQQEYECGKPLYAVKEVGTCDPGFSGTKQTFWPDDS 183

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF   + +    L    +  AYL+  +    +  +   E+   P+ E+F+   G+K +++
Sbjct: 184 IFTV-SEYKYTTLQARLRELAYLNKGITITLTDLRSKDEEG-NPQVEKFHSEEGVKEFVR 241

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               N + +  ++    TEK G     +E AI +       + SY N I T EGGTHE G
Sbjct: 242 YLNSNNNPLFDDVIYLNTEKAGVP---IECAIMYNTGYRENLHSYVNNINTKEGGTHEGG 298

Query: 334 LRVALTRGIKKY----AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            R ALTR +KKY          K  + I  +D     + ++SV + EP+F GQTKTKL +
Sbjct: 299 FRAALTRVLKKYGEDTCAKQLEKAKVEISGEDFREGLIAVISVKVAEPQFEGQTKTKLGN 358

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLR 448
            +    V  A+ +   +YL ++P EA  ++E VI  +  R+  RK RE  ++ + +    
Sbjct: 359 SEVSGAVNQAVGEALSYYLEEHPKEAKLIVEKVILAATARVAARKARESVQRKSPMSGGG 418

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           +PGKLADCS       ELF+VEGDSAGGSAKQ RNR+ QA+LPLRGKILNV  A   K  
Sbjct: 419 MPGKLADCSSKDPEECELFLVEGDSAGGSAKQGRNRAFQAILPLRGKILNVEKAMWHKAF 478

Query: 509 NNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
            + ++ +++QALG R         +   + LRY+KVIIMTDADVDG+HI +L++T F++ 
Sbjct: 479 ESDEVNNIIQALGIRFGVDSEDSKEANIDKLRYKKVIIMTDADVDGSHIDTLIMTLFFRY 538

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
              +I+  +L++ +PPL+  ++G    Y   ++ +QK ++ +    +  I   R+KGLGE
Sbjct: 539 FPQVIQNGYLYIATPPLYLCSKGKVKEYCWTDQQRQKFIDTYGGGSENAIHTQRYKGLGE 598

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           M   QL ET M+   R L +V +     S  +     + LMG     R  FI+  A++  
Sbjct: 599 MNPEQLWETTMNPENRMLKQVHLE----SAAEADYVFSMLMGEDVGPRRDFIEANATYA- 653

Query: 683 DVGT 686
           ++  
Sbjct: 654 NIDA 657


>gi|307154719|ref|YP_003890103.1| DNA gyrase subunit B [Cyanothece sp. PCC 7822]
 gi|306984947|gb|ADN16828.1| DNA gyrase, B subunit [Cyanothece sp. PCC 7822]
          Length = 640

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 255/651 (39%), Positives = 376/651 (57%), Gaps = 19/651 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + NY A  I++LEGLEPVR RPGMYIG T  + LHHL  EV+DN++DE +AGY   IEV 
Sbjct: 2   TSNYGAEQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVYEVVDNSIDEALAGYCTHIEVD 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +G +TV D+GRGIP + HP    KS LE ++T LHAGGKF    Y++SGGLHGVG+S
Sbjct: 62  INPDGSVTVTDDGRGIPTDTHP-TTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGVS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ ++VTV R    F+Q++ RGIP++ LE + +  +  GT ++F PD +IF D  
Sbjct: 121 VVNALSEWVNVTVWRDQKRFTQRYERGIPVTSLESQPETDHSTGTSVSFLPDTQIFSDGI 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD + L    +  AYL+  V+  +S  +        P  E + + GG+K Y+      +
Sbjct: 181 EFDYSTLAGRLRELAYLNAGVRITFSDKR-----LEQPRVESYCYEGGIKEYVAYMCREK 235

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
             +  EI   + E+ G  +  V         N  +  + N I T +GGTH  GL+  LTR
Sbjct: 236 QPLHEEIIYVQGERNGI-QIEVALQWYIDTYNDNLLGFANNIRTIDGGTHLEGLKAVLTR 294

Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +   A      +    ++  +++     G++SV + EPEF GQTKTKL + + +  V++
Sbjct: 295 TLNNVARKRNKIKENEPNLAGENVREGLTGVISVKVPEPEFEGQTKTKLGNTEVRGIVDS 354

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            + +    YL  +P  A  ++E  ++  +     R+ RE V RK+ +    LPGKLADCS
Sbjct: 355 LVGEVLGEYLEFHPQIADSIIEKAVQAFKAAEAARRARELVRRKSVLESSPLPGKLADCS 414

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           +     +E+FIVEGDSAGGSAKQ R+R +QA+LPLRGKILN+      KI  N +I  L+
Sbjct: 415 ERDPAKSEIFIVEGDSAGGSAKQGRDRRSQAILPLRGKILNIEKTDDAKIYKNNEIQSLI 474

Query: 518 QALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
            ALG   + +  +   LRY ++IIMTDAD DG+HI +LLLTFFY+    +++Q ++++  
Sbjct: 475 TALGLGIKGEEFDAAQLRYHRIIIMTDADYDGSHIRTLLLTFFYRYQRSIVDQGYIYIAC 534

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+++ +G    Y ++E   Q+ + E   +      I RFKGLGEM+  QL ET M+  
Sbjct: 535 PPLYKVERGKNHRYCYNERELQQYISELPPNAN--YSIQRFKGLGEMMPQQLWETTMNPE 592

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685
            R L +VEI          ++    LMG +   R +FI+     +   D+ 
Sbjct: 593 TRLLKQVEIED----AAKAEELFTILMGDRVLPRREFIETHGPRLKLTDLD 639


>gi|291561640|emb|CBL40439.1| DNA gyrase subunit B [butyrate-producing bacterium SS3/4]
          Length = 636

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 259/645 (40%), Positives = 376/645 (58%), Gaps = 20/645 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S  Y+A  I+ILEGLE VR RPGMYIG T  + LHHL  E++DNA+DE +AGY + I+V 
Sbjct: 2   SAEYNADQIQILEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNAVDEALAGYCDTIDVQ 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TVVD+GRGIPV+   K      +E++ T LHAGGKF    Y++SGGLHGVG S
Sbjct: 62  INSDNSITVVDDGRGIPVDIQKKA-GLPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGAS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS+ L V V     ++ Q++ RG  + PL+       +K GT++TF PD  IF + 
Sbjct: 121 VVNALSEWLEVEVYHGGKVYKQRYERGKTMYPLKIVGDCPSDKHGTKVTFLPDKTIFEET 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             +D   L    +  A+L+  +K     D+E  ++      + F++ GG+K ++     +
Sbjct: 181 V-YDYDTLKIRLRETAFLTKNLKIILRDDREDKKE------KVFHYEGGIKEFVTYLNRS 233

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
              +   +   + +K       VE A+   +     I S+ N I T EGGTH +G R AL
Sbjct: 234 NVPLYDNVIYCEGKKDNVL---VEVAMQHNDSYTENIYSFVNNINTPEGGTHLTGFRNAL 290

Query: 339 TRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           T+    Y    +  +        +D+      I+SV I EP+F GQTK KL + +A+  V
Sbjct: 291 TKTFNDYGRKNKLLKDNEPALTGEDIREGLTAIISVKIEEPQFEGQTKQKLGNSEARGAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           ++ + +   ++L QNP  A  ++E  V+ +      R+ +    RKT +  L LPGKLAD
Sbjct: 351 DSVVSEQLTYFLEQNPSVAKTIIEKSVLAQRARAAARKARDLTRRKTVLDGLSLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS       E++IVEGDSAGGSAK ARN+S QA+LPLRGKILNV  A  ++I  N +I  
Sbjct: 411 CSSKHPEECEIYIVEGDSAGGSAKDARNKSTQAILPLRGKILNVEKARLDRIYGNAEIKS 470

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ A G      +    LRY K+IIMTDADVDGAHI++LLLTF Y+ M +LI+Q +++L 
Sbjct: 471 MITAFGTGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFIYRFMPELIKQGYVYLA 530

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL++I +  +  YA+ +E    IL+E  +    K  I R+KGLGEM A QL ET MD 
Sbjct: 531 QPPLYKIEKNKRVWYAYSDEELNNILKEIGRDQNNK--IQRYKGLGEMDAEQLWETTMDP 588

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
             R LLRV +N+++ S  +   +   LMG + + R +FI++ A +
Sbjct: 589 EHRVLLRVTMNEEMTS--EIDLTFTTLMGDQVEPRREFIEQNAKY 631


>gi|163737410|ref|ZP_02144827.1| DNA topoisomerase IV, B subunit [Phaeobacter gallaeciensis BS107]
 gi|161388936|gb|EDQ13288.1| DNA topoisomerase 4 subunit B [Phaeobacter gallaeciensis BS107]
          Length = 652

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 345/652 (52%), Positives = 450/652 (69%), Gaps = 10/652 (1%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           +  ASD YDASSI +LEGLEPVR RPGMYIGGTDE+ALHH+ +E++DN+MDE +AG+AN 
Sbjct: 7   STPASDTYDASSIEVLEGLEPVRQRPGMYIGGTDERALHHMVAEILDNSMDEAVAGHANR 66

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV+L  +  +T+ DNGRGIP++ HPKFP+KS LE+IL TLHAGGKF    Y+ SGGLHG
Sbjct: 67  IEVTLHADYAVTISDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQTSGGLHG 126

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALSD + V VA+   +F Q+FSRGIP  P+EK     NKRGT +TF  D +IF
Sbjct: 127 VGSSVVNALSDSMVVQVAKNKELFEQRFSRGIPQGPVEKIGAAPNKRGTFVTFHADEQIF 186

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
           G    F   RL  + +SKAYL   V+  W  + +  E    P +  F+FPGGLK YL   
Sbjct: 187 GS-HRFKPKRLFTLVRSKAYLFSGVEIRWKSEIDDNE---TPTEATFHFPGGLKDYLTEV 242

Query: 277 LENRSLISSEIFTGKTE--KKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESG 333
           L   S+ + + F GK E  +K    G VEWAI W    +    SYCNT+ T EGGTH +G
Sbjct: 243 LGKSSVYAEQPFAGKVEFREKFNAPGYVEWAINWTPSRDGFTQSYCNTVPTPEGGTHVAG 302

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
              A+ +GIK Y +L  NK+A SI  +DLM     ++S FI +P F GQTK +L +  A 
Sbjct: 303 FWAAILKGIKAYGDLVGNKKAASITREDLMAGGCALVSCFIADPAFVGQTKDRLSTEIAA 362

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
           + VEN++RD FD++L  +   A  +L++++ R+EERLRR++++E  RK+A +KLRLPGKL
Sbjct: 363 KMVENSVRDHFDNWLAADTKSAGAILDFLVLRAEERLRRKQEKETQRKSATKKLRLPGKL 422

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
            DC+     GTELFIVEGDSAGGS K ARNR NQA+LPL+GKILNV  A S KI  N +I
Sbjct: 423 TDCTSKDRAGTELFIVEGDSAGGSGKGARNRVNQALLPLKGKILNVLGAASNKIGTNAEI 482

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            DL +ALG  T +++  +DLRY+K+IIMTDADVDGAHIASLL+TFF+ +M  LI+  HL+
Sbjct: 483 RDLCEALGVGTGTKFNLDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDGGHLY 542

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           L  PPLFR+TQG + VY  DE  +   LE+    GKGKI++SRFKGLGEM A  LKET M
Sbjct: 543 LACPPLFRLTQGARRVYCLDEAERDLWLEK-GLGGKGKIDVSRFKGLGEMDAKDLKETTM 601

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D   R L+RV I++D     +T + + +LMG K + R+++IQE A F++++ 
Sbjct: 602 DPTTRKLIRVTIDEDE--PGETGELVEQLMGKKPELRYQYIQENAKFVEELD 651


>gi|254511973|ref|ZP_05124040.1| DNA topoisomerase IV, B subunit [Rhodobacteraceae bacterium KLH11]
 gi|221535684|gb|EEE38672.1| DNA topoisomerase IV, B subunit [Rhodobacteraceae bacterium KLH11]
          Length = 652

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 349/652 (53%), Positives = 448/652 (68%), Gaps = 10/652 (1%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
               ++ YDASSI +LEGLEPVR RPGMYIGGTDE+ALHH+ +E++DN+MDE +AG+AN 
Sbjct: 7   TPEVTNTYDASSIEVLEGLEPVRKRPGMYIGGTDERALHHMVAEILDNSMDEAVAGHANR 66

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV L  +  LTV DNGRGIP++ HPKFP+KS LE+IL TLHAGGKF    Y+ SGGLHG
Sbjct: 67  IEVELHDDYALTVRDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQTSGGLHG 126

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALSD + V VAR  T+F Q+FSRG+PL P+EK     N+RGT +TF  D  IF
Sbjct: 127 VGASVVNALSDSMVVQVARDKTLFEQRFSRGVPLGPVEKVGAAPNRRGTTVTFHADADIF 186

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                F  ARL K  +SKAYL   V+  W   K   +    P +  F+FPGGL  YL+  
Sbjct: 187 -GHHKFKPARLFKSIRSKAYLFSGVEIRW---KSAIDDGETPTEATFHFPGGLSDYLKET 242

Query: 277 LENRSLISSEIFTG--KTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESG 333
           +   S  + + F G    ++K    G VEWAI W    +  I SYCNT+ T EGGTH +G
Sbjct: 243 MNGSSTYAEQPFAGTVDFQEKFNTPGKVEWAINWTPSRDGFIQSYCNTVPTPEGGTHVAG 302

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
              A+ +GIK Y EL  NK+A  I  DDL+     ++S FI EPEF GQTK +L +++AQ
Sbjct: 303 FWAAVLKGIKAYGELINNKKAGQITRDDLITGGCALVSCFISEPEFVGQTKDRLATVEAQ 362

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
           R VEN++RD FD++L  +   A  +L+++I R+EERLRRR ++E  RK+A +KLRLPGKL
Sbjct: 363 RLVENSVRDHFDNWLAADTKSAGAILDFLILRAEERLRRRAEKETQRKSATKKLRLPGKL 422

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
            DCS +   GTELFIVEGDSAGGSAK  R+R  QA+LPLRGKILNV  A S K+  N +I
Sbjct: 423 VDCSSSTRDGTELFIVEGDSAGGSAKMGRDRKTQALLPLRGKILNVLGAASSKLGTNAEI 482

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            DL QALG    +++  +DLRY+K+IIMTDADVDGAHIASLL+TFF+ +M  +I+  HL+
Sbjct: 483 NDLTQALGVGLGTKFNVDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPMIDAGHLY 542

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           L  PPL+R+TQG K VY  DE  + + LE+    GKGKI++SRFKGLGEM A  LKET M
Sbjct: 543 LACPPLYRLTQGAKRVYCLDEAERDEWLEK-GLGGKGKIDVSRFKGLGEMDAKDLKETTM 601

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D   R L+RV I++D     +T D + +LMG K + RF++IQE A F++++ 
Sbjct: 602 DPGSRKLIRVTIDEDE--PGETGDLVERLMGKKPELRFQYIQENARFVEELD 651


>gi|56696142|ref|YP_166498.1| DNA topoisomerase IV subunit B [Ruegeria pomeroyi DSS-3]
 gi|56677879|gb|AAV94545.1| DNA topoisomerase IV, B subunit [Ruegeria pomeroyi DSS-3]
          Length = 652

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 346/652 (53%), Positives = 451/652 (69%), Gaps = 10/652 (1%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           + + +  YDASSI +LEGLEPVR RPGMYIGGTDE+ALHH+ +EV+DN+MDE +AG+AN 
Sbjct: 7   SGAQTATYDASSIEVLEGLEPVRKRPGMYIGGTDERALHHMVAEVLDNSMDEAVAGFANR 66

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV L  +  LTV DNGRGIPV+ HPKFP KS LE+IL TLHAGGKF    Y+ SGGLHG
Sbjct: 67  IEVELHADYALTVRDNGRGIPVDPHPKFPGKSALEVILCTLHAGGKFSGKAYQTSGGLHG 126

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALSD + V VAR   ++ Q+FSRG+PL P+++     N+RGT +TF  D +IF
Sbjct: 127 VGASVVNALSDSMVVQVARDKLLYEQRFSRGLPLGPIQQIGAAPNRRGTTVTFHADEEIF 186

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                F  ARL K  +SKAYL   V+  W   K   +    P +  F+FPGGL  YL+  
Sbjct: 187 -GHHRFKPARLFKSIRSKAYLFSGVEIRW---KSAIDDGETPTEATFHFPGGLADYLKET 242

Query: 277 LENRSLISSEIFTGKTE--KKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESG 333
           L   S  + + F G  +  +K    G VEWAI W    +  I SYCNT+ T EGGTHE+G
Sbjct: 243 LGKASTYAEQPFAGTVDFTEKFNTPGKVEWAINWTPSRDGFIQSYCNTVPTPEGGTHEAG 302

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
              A+ +GI+ Y EL  NK+A  I  DDL+     ++S FIREPEF GQTK +L +++AQ
Sbjct: 303 FWSAILKGIRAYGELISNKKAAQITRDDLLTGGCALVSCFIREPEFVGQTKDRLATVEAQ 362

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
           R VE A+RD FD++L  +   A  +L++++ R+EER+RRR+++E  RKTA +KLRLPGKL
Sbjct: 363 RLVEGAVRDHFDNWLAADTKSAGAILDFLVLRAEERIRRRQEKETQRKTATKKLRLPGKL 422

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
            DCS     GTELFIVEGDSAGGSAK AR+R  QA+LPLRGKILNV  A S K+ +NQ+I
Sbjct: 423 VDCSATSREGTELFIVEGDSAGGSAKMARDRKTQALLPLRGKILNVLGAASSKLGSNQEI 482

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            DL QALG    +++  +DLRY+K+IIMTDADVDGAHIA+LL+TFF+ +M  +I+  HL+
Sbjct: 483 SDLTQALGVGLGTRFNVDDLRYDKIIIMTDADVDGAHIAALLMTFFFTQMRPMIDTGHLY 542

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           L  PPL+R+TQG K VY  DE  + + L +    GKGKI++SRFKGLGEM A  LK+T M
Sbjct: 543 LACPPLYRLTQGAKRVYCLDEAERDEWLAK-GLGGKGKIDVSRFKGLGEMDAKDLKDTTM 601

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +   R L+RV I++D     +T D + +LMG K + RF++IQE A F++++ 
Sbjct: 602 NPETRKLIRVTIDEDE--PGETGDLVERLMGKKPELRFQYIQENARFVEELD 651


>gi|148378017|ref|YP_001252558.1| DNA gyrase, B subunit [Clostridium botulinum A str. ATCC 3502]
 gi|153931278|ref|YP_001382416.1| DNA gyrase subunit B [Clostridium botulinum A str. ATCC 19397]
 gi|153936801|ref|YP_001385968.1| DNA gyrase subunit B [Clostridium botulinum A str. Hall]
 gi|148287501|emb|CAL81560.1| DNA gyrase subunit B [Clostridium botulinum A str. ATCC 3502]
 gi|152927322|gb|ABS32822.1| DNA gyrase, B subunit [Clostridium botulinum A str. ATCC 19397]
 gi|152932715|gb|ABS38214.1| DNA gyrase, B subunit [Clostridium botulinum A str. Hall]
 gi|322804284|emb|CBZ01834.1| DNA gyrase subunit B [Clostridium botulinum H04402 065]
          Length = 637

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 253/653 (38%), Positives = 372/653 (56%), Gaps = 22/653 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           +Q     YD S I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AG+   
Sbjct: 2   SQENKQVYDESQIQVLEGLEAVRKRPGMYIGSTSLRGLHHLVYEIVDNSIDEALAGFCTH 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV +  +  +TVVD+GRG+PV  H K   K  +E+I+T LHAGGKF    Y++SGGLHG
Sbjct: 62  IEVFIHKDNSITVVDDGRGMPVGMHSKV-KKPAVEVIMTILHAGGKFGGGGYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS++  V V R+  I+ QKF RGI  + L+      +  GT+I F+PD +IF
Sbjct: 121 VGASVVNALSEQCEVEVRREGHIWKQKFERGITKTGLDIVGDTEDH-GTKIYFKPDIEIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   F+   L    +  A+L+  +K   + ++         +KE F++ GGL++++   
Sbjct: 180 DEL-EFEYDTLAHRLRELAFLNKGIKISLTDER-------YDKKEMFHYEGGLRSFVLYL 231

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
             N+  +  +       K G     VE A+ + +     I S+ N I T EGGTH +G +
Sbjct: 232 NRNKEKLHQQPIYVDENKDG---CIVEIAMQYNDGYAENIFSFANNIDTIEGGTHLAGFK 288

Query: 336 VALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR I  YA      +    ++  DD+      ++SV + +P+F GQTKTKL + + +
Sbjct: 289 SALTRVINDYARKFNYLKDTDKNLSGDDVREGLTAVISVKLTDPQFEGQTKTKLGNGEVR 348

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
             V+  +      +L +NP     ++E  +  S  R   ++ RE   RK+ +    LPGK
Sbjct: 349 GIVDTIVGQSIGSFLEENPNVGKIIIEKGLSASRAREAAKRARELTRRKSILESTSLPGK 408

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L+DCS       E+++VEGDSAGGSAKQ RNR  QA+LPL+GKI+NV     +KI  + +
Sbjct: 409 LSDCSSKDPSLCEIYLVEGDSAGGSAKQGRNREFQAILPLKGKIMNVEKQRLDKILASDE 468

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++ A G     ++  + +RY ++IIMTDADVDGAHI +LLLTFFY+ M +LIE+ H+
Sbjct: 469 IRAMITAFGAGIGKEFDIDKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMKELIEEGHV 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL+RI +  K +Y + +      L E          I R+KGLGEM   QL ET 
Sbjct: 529 YIAQPPLYRIYKAKKEIYVYSDPELDAALLELGGKDTNT-NIQRYKGLGEMNPEQLWETT 587

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           MD   RTLL+V +   +    +  +    LMGTK + R  FI+  A  + ++ 
Sbjct: 588 MDPEHRTLLQVTVEDAM----EADEIFTILMGTKVEPRRDFIESNADKVVNLD 636


>gi|219850524|ref|YP_002464957.1| DNA gyrase subunit B [Chloroflexus aggregans DSM 9485]
 gi|219544783|gb|ACL26521.1| DNA gyrase, B subunit [Chloroflexus aggregans DSM 9485]
          Length = 636

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 245/647 (37%), Positives = 368/647 (56%), Gaps = 23/647 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            YD S I++LEG+E VR RPGMYIG TD   LH +  EV+DN++DEV+AG A  + V++ 
Sbjct: 8   TYDESQIQVLEGMEAVRKRPGMYIGPTDINGLHTMVREVVDNSVDEVMAGRATSVSVTIH 67

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G +TV D+G GIPV  HPK    STL +++T LHAGGKF +  Y++S GLHGVG+S V
Sbjct: 68  RDGSVTVSDDGSGIPVGIHPK-EGISTLTLVMTRLHAGGKFGSGGYKVSSGLHGVGVSAV 126

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  + V V R    + Q++  G+P++ +   E   ++ GT   F PD  I      +
Sbjct: 127 NALSSYMRVDVYRNGRHYYQEYRAGVPVTDVIDLEPT-DRHGTTTRFLPDTSIIQTL-DY 184

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L +  +  +YL+  ++  +  ++   E         FYF GG+ +Y++   +++ +
Sbjct: 185 NFDTLAQRFREMSYLNKGLRFKFVDERTNRELN-------FYFEGGIVSYVRHLNKDKVV 237

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVALTR 340
           +  + F  +          VE A+ + +        ++ N I   +GG+H SG R ALTR
Sbjct: 238 LHRQPFYVERVVDEVM---VEVALQYTDTFDTDNVYTFANNINNSDGGSHLSGFRTALTR 294

Query: 341 GIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  YA      +    ++  DD+      ++SV +++P+F+ QTK KLVS +A   V  
Sbjct: 295 VINSYARAKGLLKENESNLTGDDVREGLTAVISVKLKDPQFSSQTKEKLVSPEAASAVAT 354

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
              D F  +L +NP +A +++E  I  +  RL  +K RE  RK+A+    LPGKLADCS 
Sbjct: 355 VFGDAFSAWLDENPADARRIIEKAITAARTRLAVQKVRETARKSAMEGFSLPGKLADCSD 414

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 EL+IVEGDSAGG+AKQ R+R  QA+LPLRGKILNV  +  +++ +N ++  L+ 
Sbjct: 415 PNPARCELYIVEGDSAGGTAKQGRDRRFQAILPLRGKILNVEKSRLDRMLSNAEVRALIT 474

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+G     Q+    LRY ++ +MTDADVDG+HI +LLLTFF++ M  LI   HLF+  PP
Sbjct: 475 AIGTSIGDQFDLSKLRYHRIFLMTDADVDGSHIRTLLLTFFFRHMRPLITNGHLFIAQPP 534

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+RI  G + VY + +  +   L +       K+EI R+KGLGEM A QL ET M+   R
Sbjct: 535 LYRIKHGREQVYTYSDAERDAYLSKLPP--GTKVEIQRYKGLGEMNAEQLWETTMNPQNR 592

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +L+V +           ++   LMG     R +FIQ  A+ + ++ 
Sbjct: 593 VILQVTLED----AARADETFTMLMGDLVPPRRRFIQTHANEVVELD 635


>gi|172056050|ref|YP_001812510.1| DNA gyrase, B subunit [Exiguobacterium sibiricum 255-15]
 gi|171988571|gb|ACB59493.1| DNA gyrase, B subunit [Exiguobacterium sibiricum 255-15]
          Length = 643

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 255/649 (39%), Positives = 370/649 (57%), Gaps = 20/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
              Y A  I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I+V+
Sbjct: 10  EQGYGADQIQVLEGLEAVRKRPGMYIGSTASKGLHHLVWEIVDNSIDEALAGYCDTIKVT 69

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++    + V DNGRGIPV+   K   +  +E+ILT LHAGGKF    Y++SGGLHGVG S
Sbjct: 70  IEPGNSILVEDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGAS 128

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L V V R   ++ Q + RG+P + LE       + GT I F PD +IF +  
Sbjct: 129 VVNALSTKLEVFVKRNEKLYYQAYHRGVPAADLEIIG-TSEETGTMIRFFPDDEIFQETL 187

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +D   L    +  A+L+  +    + D+        P    F++ GG+K+Y++    ++
Sbjct: 188 EYDYDLLATRLRELAFLNKGLTIEITDDR-----ADEPITRSFHYEGGIKSYVEHLNRSK 242

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALT 339
            ++  E       + G     VE A+ + +     I S+ N I T EGGTHE+G + ALT
Sbjct: 243 EVVHEEPVYVHGNRDGI---EVEVALQYNDGFAANIYSFTNNIPTHEGGTHETGFKTALT 299

Query: 340 RGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA+     +     +  +D+      I+S+    P+F GQTKTKL + DA+   +
Sbjct: 300 RVINDYAKKFGLMKEADGTLSGEDVREGMTAIVSIKHPNPQFEGQTKTKLGNSDARTATD 359

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
                 F+ ++++NP  A  ++E  ++        +R +    RK  +    LPGKLADC
Sbjct: 360 TLFSSAFEQFMMENPTSARAIVEKGMMASRARMAAKRARELTRRKGVLEVSSLPGKLADC 419

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S   A  +E++IVEGDSAGGSAK  R+R  QA+LP+RGKILNV  A  +KI  N +I  +
Sbjct: 420 SSRDATISEIYIVEGDSAGGSAKSGRDRHFQAILPIRGKILNVEKARLDKILGNNEIRTI 479

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + ALG    S++  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  L+E  ++++  
Sbjct: 480 ITALGTSIGSEFNIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRPLVEHGYVYIAQ 539

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+ I QG    Y H+E    + L    ++ +   +I R+KGLGEM   QL ET MD +
Sbjct: 540 PPLYGIKQGKNITYVHNERELNEALAALPENAR--YDIQRYKGLGEMDPEQLWETTMDPS 597

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            R +LRVE+   +    +  +  + LMG + + R  FIQ  A ++ ++ 
Sbjct: 598 GRQMLRVELQDAI----EADEVFDILMGDQVEPRRDFIQSHAHYVKNLD 642


>gi|327188314|gb|EGE55532.1| DNA gyrase protein, B subunit [Rhizobium etli CNPAF512]
          Length = 743

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 446/695 (64%), Positives = 541/695 (77%), Gaps = 16/695 (2%)

Query: 3   DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQ-----------SASDNYDASSIRI 51
           DDS DLFS LP   +    +   +     +PA A             S SD Y ASSIR+
Sbjct: 52  DDSNDLFSGLPLSEKREEAQKPAAAAERPAPATATPPAASARPAPAGSNSDEYGASSIRV 111

Query: 52  LEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVD 111
           LEGLEPVRMRPGMYIGGTDEKALHHLF+EVIDNAMDE +AG+AN IEV LD  G+LTV D
Sbjct: 112 LEGLEPVRMRPGMYIGGTDEKALHHLFAEVIDNAMDEAVAGHANFIEVHLDLQGYLTVTD 171

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171
           NGRGIPVENHP+ P KSTLE+I+T LHAGGKFD   YE SGGLHGVG+SVVNALSD L V
Sbjct: 172 NGRGIPVENHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVSVVNALSDFLEV 231

Query: 172 TVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMT 231
            VAR   ++ Q+FSRG+P   LE+   V N+RGTR+ F PD +IFG+   FDAAR+ +M 
Sbjct: 232 EVARNRKLYRQRFSRGLPQGGLEELGDVHNRRGTRVRFHPDAQIFGEHMKFDAARVFRMA 291

Query: 232 QSKAYLSGRVKTCWSCD-KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
           +SKAYL G V+  WSCD   + E   +P+K  F+FPGGLK YLQ  +     ++ EIF G
Sbjct: 292 RSKAYLFGGVEIRWSCDAGVLPEGSEVPDKAVFHFPGGLKDYLQATMGKEFTVTREIFAG 351

Query: 291 KTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
           KTEK  +  G++EWAI W   +P++ SYCNTI T EGGTHE+GLR+ALT+G+K YAELTQ
Sbjct: 352 KTEK-ASGHGSMEWAITWYGGDPQVHSYCNTIPTPEGGTHEAGLRIALTKGLKAYAELTQ 410

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
           NKRA  I +DD+MISAVG+LSVFIREPEF GQTK KL +++AQR VENALRDPFDHYL  
Sbjct: 411 NKRAAQITTDDVMISAVGMLSVFIREPEFVGQTKDKLATVEAQRIVENALRDPFDHYLAD 470

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           NP EA KLL+WVIER+EERLRRRK++EVNRKTA+RKLRLPGKLADCSQN A G ELFIVE
Sbjct: 471 NPNEAAKLLDWVIERAEERLRRRKEKEVNRKTAVRKLRLPGKLADCSQNTAEGAELFIVE 530

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530
           GDSAGGSAKQARNR+NQA+LPLRGKILNVASAG EK+  NQQ+ DL+QALGC TRS+YR+
Sbjct: 531 GDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLGANQQLADLIQALGCGTRSKYRD 590

Query: 531 EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVY 590
           EDLRYE++I+MTDADVDGAHIASLL+TFFYQEM +L+   HLFL  PPL++ITQG+KS Y
Sbjct: 591 EDLRYERIIVMTDADVDGAHIASLLITFFYQEMPELVRGGHLFLAVPPLYKITQGSKSAY 650

Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
           A D+ H+ ++++  +  GK K+EISRFKGLGEM+ +QLKET MD +KRTLL+V I++   
Sbjct: 651 ARDDNHRAELMQT-EFRGKAKVEISRFKGLGEMMPAQLKETTMDPSKRTLLKVLIDEV-- 707

Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             + T+ +++ LMGTK + RF+FIQERA+F +++ 
Sbjct: 708 DFEGTRSAVDDLMGTKPEARFRFIQERAAFAENLD 742


>gi|311746751|ref|ZP_07720536.1| DNA gyrase, B subunit [Algoriphagus sp. PR1]
 gi|126578430|gb|EAZ82594.1| DNA gyrase, B subunit [Algoriphagus sp. PR1]
          Length = 652

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 264/663 (39%), Positives = 383/663 (57%), Gaps = 22/663 (3%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           +         Y A +I++LEGLE VR RP MYIG    K LHHL  EV+DN++DE +AG+
Sbjct: 2   SEEKAKKPAGYGAGNIQVLEGLEAVRKRPAMYIGDVGVKGLHHLIWEVVDNSVDEALAGH 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
            + I V+++ +  +TV DNGRGIP + H K   KS LE++LT LHAGGKFD  TY++SGG
Sbjct: 62  CDTIHVTVNVDNSITVEDNGRGIPTDWHEK-EQKSALEVVLTVLHAGGKFDKDTYKVSGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+S VNALS +L  TV R   I  Q+F  G+P  P ++  K  +KRGT I F+PD 
Sbjct: 121 LHGVGVSCVNALSTDLKATVFRDGVITEQEFKIGVPQYPAKEVGKT-DKRGTMIHFKPDD 179

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF     +    +    +  A+L+  V+      +E  E+ G    +EFY  GGL  ++
Sbjct: 180 SIF-THTEYKYETIANRLREMAFLNAGVRIFLKDLRE-IEEDGNARTDEFYSEGGLVEFV 237

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHES 332
           Q     R  I  E    + E        V+ A+ +     E   SY NTI T EGGTH +
Sbjct: 238 QYLDNTREKIIEEPIYIEGEFNSVP---VQVAMNYNTSYSENVVSYVNTINTYEGGTHVT 294

Query: 333 GLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR +K YA+ +    K  + +  DD       ++SV + EP+F GQTKTKL + 
Sbjct: 295 GFRRALTRTLKSYADKSGMLDKLKLEVSGDDFREGLTAVISVKVAEPQFEGQTKTKLGNS 354

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRL 449
           +    V++A+ +    +L ++P EA  ++  V+  ++ R   RK RE+ ++  +     L
Sbjct: 355 EVVGAVDSAVSETLQSWLEEHPKEAKIIVGKVVLAAQARHAARKAREMVQRKNVLGGGGL 414

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC+ +     EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A   KI +
Sbjct: 415 PGKLADCANSDPTVCELYLVEGDSAGGSAKQGRDRDFQAILPLKGKILNVEKAHEHKIYD 474

Query: 510 NQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           N +I +++ ALG +  +   ++     +LRY K+IIMTDAD+DG+HI +L+LT F++ M 
Sbjct: 475 NDEIKNILTALGVKFGTVNDDKELDLSNLRYHKIIIMTDADIDGSHIRTLILTLFFRYMR 534

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEM 623
            LIE+  +++  PPL+ + +G    Y   EE ++ + +E  K GK   + I R+KGLGEM
Sbjct: 535 TLIEKGFIYIALPPLYLLKRGKDERYCWTEEERKLLTKEMAKDGKEDSVGIQRYKGLGEM 594

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
              QL  T MD N RT+ +V I+    S  +     + LMG +   R +FI++ A +   
Sbjct: 595 NPEQLWTTTMDPNVRTIKQVTID----SAAEADHLFSMLMGDEVAPRREFIEKNAKYAK- 649

Query: 684 VGT 686
           + T
Sbjct: 650 IDT 652


>gi|238018216|ref|ZP_04598642.1| hypothetical protein VEIDISOL_00040 [Veillonella dispar ATCC 17748]
 gi|237864687|gb|EEP65977.1| hypothetical protein VEIDISOL_00040 [Veillonella dispar ATCC 17748]
          Length = 633

 Score =  619 bits (1597), Expect = e-175,   Method: Composition-based stats.
 Identities = 253/650 (38%), Positives = 371/650 (57%), Gaps = 23/650 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
             +NY A +I++LEGL+ VR RPGMYIG T  + LHHL  EV+DN++DE +AGYA  IEV
Sbjct: 2   PEENYGAQNIQVLEGLDAVRKRPGMYIGSTSIRGLHHLVYEVVDNSVDEALAGYATHIEV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           S++ +  +TVVD+GRGIP   H      S +E++LT LHAGGKF    Y++SGGLHGVGI
Sbjct: 62  SINEDNSITVVDDGRGIPTGMHE--SGMSAVELVLTKLHAGGKFGGGGYKVSGGLHGVGI 119

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+   V VA+   I    F+RG   S L +  K     GT + F+PD +IF   
Sbjct: 120 SVVNALSEWTKVQVAQNGIIQEITFARGHKTSELHEIGKAEG-TGTTVIFKPDAEIFETT 178

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L    Q  A+L+  ++   S  +        P  E F++ GGL +++    EN
Sbjct: 179 V-FNFDTLKIRLQELAFLNKGLRITLSDLR-----QEEPRVESFHYEGGLSSFIAFLNEN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVAL 338
           + +++  +   +  K       V+ A+ + +   E   S+ N I T +GGTH SG R AL
Sbjct: 233 KEVVNPTVIDIENTKDDV---VVDVALQYNDSYSENLLSFVNNINTVDGGTHLSGFRAAL 289

Query: 339 TRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y   +   +    ++  +D+      ++SV + EP+F GQTKTKL + + +   
Sbjct: 290 TRTLNDYGRKSGLIKENESNLSGEDVREGLTAVVSVKVLEPQFEGQTKTKLGNSEVKGIT 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           +  + +    +  ++P +A K++E   +        R+ +    RK A+    LPGKLAD
Sbjct: 350 DVIVSEGLKTFFEEHPQDAKKIIEKATMASRAREAARKARDLTRRKNALEVSSLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS+     TE+++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI  N +I  
Sbjct: 410 CSEKDTSMTEIYLVEGDSAGGSAKQGRDRRYQAILPLRGKILNVEKARLDKILANNEIRS 469

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ A G     ++     RY K+IIMTDADVDGAHI +LLLTFFY+ M  L+E+ H+++ 
Sbjct: 470 MITAFGTGIGEEFDITKSRYNKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIYIA 529

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL++I +G    Y + +      L+E  + G   I I R+KGLGEM   QL ET M+ 
Sbjct: 530 QPPLYQIKKGKSHWYVYSDAELTAKLDEVGRDG---ITIQRYKGLGEMNPEQLWETTMNP 586

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             RT+L+V +   +    +       LMG K + R KFI++ A ++ ++ 
Sbjct: 587 EHRTILQVSLEDSI----EADKIFTVLMGDKVEPRRKFIEDNAKYVRNLD 632


>gi|83858465|ref|ZP_00951987.1| DNA topoisomerase IV subunit B [Oceanicaulis alexandrii HTCC2633]
 gi|83853288|gb|EAP91140.1| DNA topoisomerase IV subunit B [Oceanicaulis alexandrii HTCC2633]
          Length = 712

 Score =  619 bits (1597), Expect = e-175,   Method: Composition-based stats.
 Identities = 357/717 (49%), Positives = 477/717 (66%), Gaps = 38/717 (5%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSAS------------------- 41
           M DDS D   + P   +G +         PD    A  +A                    
Sbjct: 1   MADDSQDDLFSAPSAPKGPASPSAPRVTTPDPAPAAQSTAEPPRQTPPAPPPAAPKPAAP 60

Query: 42  --------DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
                     YDASSI +LEGLEPVR RPGMYIGGTDE+ALHHLF+E++DN+MDE +AG+
Sbjct: 61  IPAASAENKGYDASSIEVLEGLEPVRKRPGMYIGGTDERALHHLFAEILDNSMDEAVAGH 120

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ IEV++D +GF++V DNGRGIPV+ HPKFP+KS LE++LTTLHAGGKF +  Y+ +GG
Sbjct: 121 ADRIEVTMDEDGFVSVSDNGRGIPVDPHPKFPDKSALEVVLTTLHAGGKFSDKAYQTAGG 180

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS+ + V VAR  T++ Q + RGIP  P+EK     N+RGT + F+PDP
Sbjct: 181 LHGVGVSVVNALSELVEVEVARDKTLWRQVYVRGIPQGPVEKVGGAPNRRGTTVRFKPDP 240

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IFG +A   A R+  M ++KA+L   V+  W C + + E   IP +    FPGGL   L
Sbjct: 241 EIFGPRAILKAPRIFNMARAKAFLRRGVQIRWKCPESLVEGTDIPAETTLAFPGGLADRL 300

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-----EITSYCNTILTDEGG 328
                  + + ++ F G+ E+ G   G VEWA+A+ E           S+CNT+ T  GG
Sbjct: 301 VELTPGAA-LVTDQFAGRVERDGRM-GAVEWAVAFSENGFGPDDSFCQSFCNTVPTPMGG 358

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           THE GLR AL++G++ Y EL   K+A  I +DD+M  A  ++SVFI++PEF GQTK +L 
Sbjct: 359 THEQGLRSALSKGLRAYGELANVKKAAQITADDVMGGAGVLISVFIKDPEFQGQTKDRLS 418

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR 448
           + +A R VE A+RD FDH+L   P +A +L+EW ++R+E+RL+R++++EV R++A RKLR
Sbjct: 419 TAEAGRLVEQAIRDQFDHWLAGRPKDAARLVEWAVDRAEDRLKRKREKEVKRQSATRKLR 478

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCSQN A G ELF+VEGDSAGGSAKQAR+R  QA+LPLRGKILNVASA ++KI 
Sbjct: 479 LPGKLADCSQNSAEGAELFLVEGDSAGGSAKQARDRKTQAILPLRGKILNVASATADKIA 538

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            NQ+I DL+ ALG +   ++  EDLRYE+VIIM DADVDGAHIA+LL TFFY+ +  LIE
Sbjct: 539 ANQEISDLLLALGVQPGKKFDLEDLRYERVIIMCDADVDGAHIAALLATFFYKFLPGLIE 598

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
              LF+  PPL+R+TQG K++YA D+  K ++LE   K  KGK+E+ RFKGLGEM   QL
Sbjct: 599 SGRLFMAQPPLYRLTQGGKTLYAQDDVEKDRLLETAFK--KGKVEVGRFKGLGEMTPPQL 656

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           K T M    R+L RV +  ++   +     +  LMG K + RF+FIQ+ A F++DV 
Sbjct: 657 KSTTMLPESRSLARVVVTPEMR--ESADALVETLMGKKPELRFQFIQDNAPFVEDVD 711


>gi|190710581|gb|ACE95121.1| gyrase subunit B [Bacillus thuringiensis serovar sotto]
          Length = 627

 Score =  619 bits (1597), Expect = e-175,   Method: Composition-based stats.
 Identities = 263/644 (40%), Positives = 378/644 (58%), Gaps = 21/644 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R   I  QK+ RGIP++ L+      +K GT   F+PDP+IF +  
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E    +  K G     VE A+ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF++ QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            R+LL+V +   +    +  ++   LMG K + R   IQE A +
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNSIQENAKY 627


>gi|6006289|dbj|BAA84773.1| DNA gyrase B subunit [Bacteroides fragilis]
          Length = 653

 Score =  619 bits (1597), Expect = e-175,   Method: Composition-based stats.
 Identities = 257/661 (38%), Positives = 382/661 (57%), Gaps = 22/661 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
            N + + +Y A SI++LEGLE VR RP MYIG    K LHHL  E++DN++DE +AGY +
Sbjct: 5   QNPTNNGSYSADSIQVLEGLEAVRKRPAMYIGDISVKGLHHLVYEIVDNSIDEALAGYCD 64

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            IEV+++ +  +TV DNGRGIPV+ H K   KS LE+ +T LHAGGKFD  +Y++SGGLH
Sbjct: 65  HIEVTINEDNSITVQDNGRGIPVDFHEK-EQKSALEVAMTVLHAGGKFDKGSYKVSGGLH 123

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+S VNALS  +   V R   I+ Q++  G PL P+++   + +  GT+  F PD  I
Sbjct: 124 GVGMSCVNALSTHMTTQVFRNGKIYQQEYEIGKPLYPVKEVG-IADHTGTKQQFWPDDSI 182

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   +D   L    +  AYL+  ++   +  + +  + G  + E FY   GL+ +++ 
Sbjct: 183 FTETI-YDYKILASRLRELAYLNAGLRISLTD-RRVVNEDGSFKHETFYSEEGLREFVRF 240

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              +R  + +++    TEK+      +E AI +       I SY N I T EGGTH +G 
Sbjct: 241 IESSREHLINDVIYLNTEKQNIP---IEVAIMYNTGFSENIHSYVNNINTIEGGTHLAGF 297

Query: 335 RVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +KKYAE ++   K  + I  DD       ++SV + EP+F GQTKTKL + + 
Sbjct: 298 RRALTRTLKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEV 357

Query: 393 QRTVENALRDPFDHYL-VQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLP 450
              +         +Y   ++P EA  +++ VI  +  R   RK RE+ ++ + +    LP
Sbjct: 358 NGVLPIRRYGEVLNYYLEEHPKEAKAIVDKVILAATARHAARKAREMVQRKSPMSGGGLP 417

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS       ELF+VEGDSAGG+AKQ RNR+ QA+LPLRGKILNV  A   K   +
Sbjct: 418 GKLADCSDKDPQKCELFLVEGDSAGGTAKQGRNRAFQAILPLRGKILNVEKAMYHKALES 477

Query: 511 QQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           ++I ++  ALG    ++        + LRY K+IIMTDADVDG+HI +L++TFF++ M  
Sbjct: 478 EEIRNIYTALGVTIGTEEDSKAANIDKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQ 537

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           +I+  +L++ +PPL+   +G    Y   +  +QK ++ +    +  I   R+KGLGEM A
Sbjct: 538 IIQNGYLYIATPPLYLCKKGKIEEYCWTDAQRQKFIDTYGGGSENAIHTQRYKGLGEMNA 597

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL ET MD   R L +V I+    +  +     + LMG     R +FI+E A++  ++ 
Sbjct: 598 QQLWETTMDPENRMLKQVNID----NAAEADYIFSMLMGEDVGPRREFIEENATYA-NID 652

Query: 686 T 686
            
Sbjct: 653 A 653


>gi|160893407|ref|ZP_02074192.1| hypothetical protein CLOL250_00956 [Clostridium sp. L2-50]
 gi|156864802|gb|EDO58233.1| hypothetical protein CLOL250_00956 [Clostridium sp. L2-50]
          Length = 638

 Score =  619 bits (1597), Expect = e-175,   Method: Composition-based stats.
 Identities = 272/650 (41%), Positives = 382/650 (58%), Gaps = 19/650 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S+NYDA  I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AGY N IEV 
Sbjct: 2   SNNYDAEQIQVLEGLEAVRKRPGMYIGSTSTRGLHHLVYEIVDNSVDEALAGYCNHIEVF 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TVVDNGRGIPV    K   KS LE++ T LHAGGKF    Y++SGGLHGVG S
Sbjct: 62  INPDNSITVVDNGRGIPVGIQEK-TGKSALEVVFTVLHAGGKFGGGGYKVSGGLHGVGAS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS+ L V V R   ++ Q + RG   S L+       +K GT++TF PD  IF D 
Sbjct: 121 VVNALSEWLEVEVTRDGHVYKQTYKRGNVDSTLQIIADAPEDKSGTKVTFLPDKTIFDDW 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             +D   L    +  A+L+  +K   +  +        P++  F++ GG+K +++    +
Sbjct: 181 I-YDYDTLRTRLRETAFLTKGLKITLTDLR-----VDPPKERHFHYEGGIKEFVEYMNRH 234

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           R  +  ++   +  K G +   VE A+   +     I SY N I T EGGTH +G + A+
Sbjct: 235 REALYDKVIYCEGLKDGVY---VEVAMQHNDSYNEMIHSYVNNINTPEGGTHLTGFKSAI 291

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           T+    YA       ++  ++  +DL      I+SV I EP+F GQTK KL + + +  V
Sbjct: 292 TKIFNDYARKNNLLKEKEDNLSGEDLREGMSAIVSVKIGEPQFEGQTKQKLGNSEVRPVV 351

Query: 397 ENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           EN + +   ++L QNP  A  ++   V+ +      RR +    +      + LPGKLAD
Sbjct: 352 ENIVSEQLTYFLEQNPNIAKIIINKSVMAQRARIAARRARDVARKANLADNMALPGKLAD 411

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS       E++IVEGDSAGGSAK+AR+R+ QA+LPLRGKILNV  A  ++I  N +I  
Sbjct: 412 CSDKDPKNCEIYIVEGDSAGGSAKKARSRATQAILPLRGKILNVEKARIDRILENAEIKA 471

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ A G      +  + LRY K+IIMTDADVDGAHIA+LLLTFFY+ M DLI + H++L 
Sbjct: 472 MITAFGTGIHENFDIDKLRYNKIIIMTDADVDGAHIATLLLTFFYRFMPDLIRKGHVYLA 531

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+++ +  K  YA+ ++    IL E  +    K  I R+KGLGEM A QL ET MD 
Sbjct: 532 QPPLYKLEKNKKIWYAYSDDELNSILNEVGRDQSNK--IQRYKGLGEMDAEQLWETTMDP 589

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            KR LL+V I+ D  S  D   + N LMG K + R +FI+  A F+ ++ 
Sbjct: 590 EKRILLKVAIDDDDESEIDM--TFNVLMGDKVEPRRQFIETNAKFVKNLD 637


>gi|182416761|ref|ZP_02948158.1| DNA gyrase, B subunit [Clostridium butyricum 5521]
 gi|237669641|ref|ZP_04529619.1| DNA gyrase, B subunit [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182379418|gb|EDT76913.1| DNA gyrase, B subunit [Clostridium butyricum 5521]
 gi|237654875|gb|EEP52437.1| DNA gyrase, B subunit [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 637

 Score =  619 bits (1597), Expect = e-175,   Method: Composition-based stats.
 Identities = 264/645 (40%), Positives = 388/645 (60%), Gaps = 19/645 (2%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YD + I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AGY   IEV+++ 
Sbjct: 8   YDENQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNSIDEALAGYCKKIEVNINK 67

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +  +TV+D+GRG+PV  HPK   KST+E+I+T LHAGGKF    Y++SGGLHGVG SVVN
Sbjct: 68  DNSITVIDDGRGMPVGIHPKM-GKSTVEVIMTILHAGGKFGGGGYKVSGGLHGVGASVVN 126

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS+E  VTV R+  I+ Q++S+G  L+ +EK  +     GT++ F+PD +IF +   FD
Sbjct: 127 ALSEECRVTVKREGAIWQQEYSKGKVLTDVEKIGESSE-SGTQVYFKPDAEIFDEVI-FD 184

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L +  +  A+L+  +       +E  EK      E F++ GG+K+++     N+  +
Sbjct: 185 FEILAQRLRELAFLNKGIYIKLVDLREENEKE-----EVFHYEGGIKSFVSYLNRNKVAL 239

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
             E    +  K      +VE A+ + +     I S+ N I T EGGTH  G + ALTR  
Sbjct: 240 HEEPIYIEGIKDNV---SVEVALQYNDGYTENIFSFANNIDTVEGGTHLVGFKTALTRAF 296

Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             YA+      +   +   DD+      ++SV I EP+F GQTKTKL + + +  V++ +
Sbjct: 297 NDYAKKFGHIKENDKNFTGDDIREGLTAVVSVKIEEPQFEGQTKTKLGNSEVRGIVDSIV 356

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
            +    +L +NP     +++  +  +  R   RK RE+ RK+ + +  LPGKLADCS   
Sbjct: 357 GECISTFLEENPSVGKMIVDKALMAARARDAARKARELTRKSVLERSTLPGKLADCSSKD 416

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
               E++IVEGDSAGGSAKQ RNR  QA+LPLRGKILNV     ++I N   I  +V A 
Sbjct: 417 PKECEIYIVEGDSAGGSAKQGRNRKFQAILPLRGKILNVEKQRLDRILNADTIRSMVTAF 476

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           G    + +  E +RY+++IIMTDADVDGAHI +LLLTFFY+ M  LI++ H+++  PPL+
Sbjct: 477 GAGIGNDFDIEKIRYDRIIIMTDADVDGAHIRTLLLTFFYRYMRPLIDEGHVYIAQPPLY 536

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           +I++G K  YA+ +   +++L +F        +I R+KGLGEM ASQL +T MD  +R L
Sbjct: 537 KISKGKKEHYAYSDAELEQVLIDFGGKDNST-DIQRYKGLGEMNASQLWDTTMDPEQRIL 595

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           LRV +   +       +    LMG K + R +FIQ+ A  + ++ 
Sbjct: 596 LRVNVEDAM----QADEIFTILMGEKVEPRKEFIQQNAKNVVNLD 636


>gi|325279486|ref|YP_004252028.1| DNA gyrase, B subunit [Odoribacter splanchnicus DSM 20712]
 gi|324311295|gb|ADY31848.1| DNA gyrase, B subunit [Odoribacter splanchnicus DSM 20712]
          Length = 654

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 261/660 (39%), Positives = 373/660 (56%), Gaps = 22/660 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +     Y A SI++LEGLE VRMRP MYIG  + K LHHL  EV+DN++DE +AG+ + I
Sbjct: 6   EKNEREYSADSIQVLEGLEAVRMRPSMYIGDVNVKGLHHLVYEVVDNSIDEALAGFCDHI 65

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V+++ +  ++V DNGRGIP   H K  NKS LE+++T LHAGGKFD  +Y++SGGLHGV
Sbjct: 66  QVTINEDNSISVRDNGRGIPTARHSK-ENKSALEVVMTVLHAGGKFDKDSYKVSGGLHGV 124

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+S VNALS  L   + R+  I+ Q++ +GIP   ++      ++ GT ITF PD  IF 
Sbjct: 125 GVSCVNALSTTLIAEIHREGKIWRQEYHKGIPAGDVQVVGDT-DRTGTTITFLPDDTIFY 183

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               +    L    +  AYL+  ++   +  +EI  +   P  E F+   GL  +++   
Sbjct: 184 V-TEYKYDILSARLRELAYLNKGIRLSLTDKREIDPETNAPRHEVFFSQHGLSEFVEYLD 242

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRV 336
             R  +  +     TEK G     VE A+ +     E   SY N I T EGGTH +G + 
Sbjct: 243 NTREKLIEDTIDIATEKNGIP---VEVALHYNTGFSENVFSYVNNINTIEGGTHLTGFKR 299

Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
            LT  +K YAE      K    I SDD       ++SV + EP+F GQTKTKL + +   
Sbjct: 300 GLTTTLKAYAESHGMLSKLKFDINSDDFREGLTAVISVKVAEPQFEGQTKTKLGNTEVGT 359

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            V  A+    ++YL +NP EA  +++ VI  +  R   RK R+ V RKT +    LPGKL
Sbjct: 360 AVSQAVSTVLENYLEENPREAKAIVDKVILAATARHAARKARDLVQRKTVLSGSGLPGKL 419

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS N     E+F+VEGDSAGG+AKQ R+R  QA+LPLRGKILNV  A   ++  + +I
Sbjct: 420 ADCSDNDPAKCEIFLVEGDSAGGTAKQGRDRRYQAILPLRGKILNVEKAMMHRVYESDEI 479

Query: 514 MDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
             + QALG    +Q        E LRY K++IM DADVDGAHIA+L++T F++ M  +IE
Sbjct: 480 KIIFQALGITIGTQEDSKAVNLEKLRYHKIVIMADADVDGAHIATLIMTLFFRFMRPVIE 539

Query: 569 QKHLFLISPPLFRITQGTKS-VYAHDEEHKQKILEEFKK-HGKGKIEISRFKGLGEMLAS 626
             +L++ +PPL+ + +G K   Y   ++  ++++ E     G   + I R+KGLGEM   
Sbjct: 540 NGYLYIATPPLYSVKKGNKEQRYCWTDKELEQLVNEMSNGKGDAGLHIQRYKGLGEMSKE 599

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           QL ET M    R L +V I     +  D     + LMG     R +FI++ A++   +  
Sbjct: 600 QLWETTMSPENRILRQVSIE----NAADADRIFSMLMGDDVPPRRQFIEQNATYAT-IDA 654


>gi|87123248|ref|ZP_01079099.1| DNA gyrase, B subunit [Synechococcus sp. RS9917]
 gi|86168968|gb|EAQ70224.1| DNA gyrase, B subunit [Synechococcus sp. RS9917]
          Length = 705

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 262/652 (40%), Positives = 368/652 (56%), Gaps = 16/652 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
                    Y A  I++LEGLEPVR RPGMYIG T  + LHHL  EV+DN++DE +AG+ 
Sbjct: 2   SEASKVQAAYGAEQIQVLEGLEPVRKRPGMYIGTTGPRGLHHLVYEVVDNSVDEALAGHC 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + IEV L  +G  +V DNGRGIP + HP+   KS LE +LT LHAGGKF    Y++SGGL
Sbjct: 62  SEIEVVLGDDGSASVTDNGRGIPTDIHPR-TGKSALETVLTVLHAGGKFGAGGYKVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS---PLEKKEKVRNKRGTRITFRP 211
           HGVG+SVVNALS+ + VTV RQ  +  Q+F RG P+       +  + + + GT + F+P
Sbjct: 121 HGVGVSVVNALSEWVEVTVRRQGQVHRQRFERGAPIGSLASAPQPVEEKGRTGTSVCFKP 180

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP-EKEEFYFPGGLK 270
           D +IF     FD A L    +  AYL+G V+  +  ++E A        +E +++ GG+K
Sbjct: 181 DLEIFTGGIVFDYATLSARLRELAYLNGGVRIVFRDERESALNAEGDAHEEVYFYEGGIK 240

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330
            Y+      +  +  EI     EK G  +            +  I  + N I T +GGTH
Sbjct: 241 EYVAYMNAEKDPLHPEIIYVNAEKDGV-QVEAALQWCVDAYSDSILGFANNIRTVDGGTH 299

Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             GL+  LTR +  +A+    ++    ++  +++      +LSV + EPEF GQTKTKL 
Sbjct: 300 IEGLKTVLTRTLNAFAKKRGKRKESDSNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLG 359

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447
           + + +  V++ + +    YL  NP     +LE  I+        R+ RE V RK+ +   
Sbjct: 360 NTEVRGIVDSLVGEALSQYLEFNPSVIDMILEKAIQAFNAAEAARRARELVRRKSVLESS 419

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILN+      +I
Sbjct: 420 TLPGKLADCSSRDPAESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDARI 479

Query: 508 RNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
             N +I  L+ ALG   + +  +   LRY +V+IMTDADVDGAHI +LLLTFFY+   +L
Sbjct: 480 YKNTEIQALITALGLGIKGEDFDAKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKEL 539

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           +E   +++  PPL+++ +G    Y ++E+  Q  L  F +  K    I RFKGLGEM+  
Sbjct: 540 VEGGFIYIACPPLYKVERGKNHTYCYNEQDLQTTLAGFGE--KANYNIQRFKGLGEMMPK 597

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           QL ET MD   R + RVEI   L    +       LMG K   R +FI+  A
Sbjct: 598 QLWETTMDPTTRLMKRVEIEDAL----EADRIFTILMGDKVAPRREFIETTA 645


>gi|266620982|ref|ZP_06113917.1| DNA gyrase, B subunit [Clostridium hathewayi DSM 13479]
 gi|288867363|gb|EFC99661.1| DNA gyrase, B subunit [Clostridium hathewayi DSM 13479]
          Length = 636

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 258/650 (39%), Positives = 383/650 (58%), Gaps = 21/650 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S+ Y A  I+ILEGLE VR RPGMYIG T  + LHHL  E++DNA+DE +AGY ++I+V+
Sbjct: 2   SEEYGADQIQILEGLEAVRKRPGMYIGSTSVRGLHHLVYEIVDNAVDEALAGYCDMIDVT 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TVVD+GRGIPV    K      +E+  T LHAGGKF    Y++SGGLHGVG S
Sbjct: 62  INEDNSITVVDDGRGIPVGIQKKA-GIPAVEVAFTILHAGGKFGGGGYKVSGGLHGVGAS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS+ L V + +    + Q++ +G  + PL+   +   ++ GT++TF PD  IF + 
Sbjct: 121 VVNALSNWLEVEITQDGKTYKQRYEKGKTMYPLKVIREAGPDEHGTKVTFLPDETIFEET 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             FD   L    +  A+L+  +K     ++E         +  F++ GG+K ++      
Sbjct: 181 V-FDYDTLKIRLRETAFLTKNLKIVLRDNRE------EKHEHVFHYEGGIKEFVTYLNRG 233

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ +  ++F  +  K G +   VE ++   +     I S+ N I T EGGTH SG + AL
Sbjct: 234 KTPLYDQVFYCEGSKDGVY---VEVSMQHNDSYTENIYSFVNNINTPEGGTHLSGFKNAL 290

Query: 339 TRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           T  +  YA   +  +    ++  +D+      I+SV I EP+F GQTK KL + +A+  V
Sbjct: 291 TNTLNDYARNNKLLKENEANLSGEDIREGLTAIISVKIEEPQFEGQTKQKLGNSEARGAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           +N LR+ F ++L QNP  A  + +  ++ +      R+ +    RKTA+  + LPGKLAD
Sbjct: 351 DNILREQFTYFLEQNPSVAKTICDKSIMAQRARAAARKARDLTRRKTALEGMALPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS       E++IVEGDSAGGSAK AR+R  QA+LPLRGKILNV  A  ++I +N +I  
Sbjct: 411 CSDKNPENCEIYIVEGDSAGGSAKTARSRDTQAILPLRGKILNVEKARLDRIYSNAEIKA 470

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ A G      +    LRY K+IIMTDADVDGAHI++LLLTF Y+ M +LI+Q H++L 
Sbjct: 471 MITAFGTGIHEDFDISKLRYNKIIIMTDADVDGAHISTLLLTFLYRFMPELIKQGHVYLA 530

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+++ +  K  YA+ +E    IL+E  +    K  I R+KGLGEM A QL ET MD 
Sbjct: 531 QPPLYKVEKNKKVWYAYSDEELNNILKEIGRDTNNK--IQRYKGLGEMDAEQLWETTMDP 588

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +R LLRV  ++   +  +   +   LMG + + R +FI+  A +  ++ 
Sbjct: 589 ERRILLRVAFDE--ETASEIDLTFTTLMGDQVEPRREFIEANAKY-GNLD 635


>gi|27466922|ref|NP_763559.1| DNA gyrase subunit B [Staphylococcus epidermidis ATCC 12228]
 gi|57865927|ref|YP_190090.1| DNA gyrase, B subunit [Staphylococcus epidermidis RP62A]
 gi|251811368|ref|ZP_04825841.1| DNA gyrase subunit B [Staphylococcus epidermidis BCM-HMP0060]
 gi|282874725|ref|ZP_06283604.1| DNA gyrase, B subunit [Staphylococcus epidermidis SK135]
 gi|293367576|ref|ZP_06614229.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|38604835|sp|Q8CQK4|GYRB_STAES RecName: Full=DNA gyrase subunit B
 gi|81819302|sp|Q5HK03|GYRB_STAEQ RecName: Full=DNA gyrase subunit B
 gi|27314464|gb|AAO03601.1|AE016744_4 DNA gyrase subunit B [Staphylococcus epidermidis ATCC 12228]
 gi|57636585|gb|AAW53373.1| DNA gyrase, B subunit [Staphylococcus epidermidis RP62A]
 gi|251805117|gb|EES57774.1| DNA gyrase subunit B [Staphylococcus epidermidis BCM-HMP0060]
 gi|281296441|gb|EFA88956.1| DNA gyrase, B subunit [Staphylococcus epidermidis SK135]
 gi|291318289|gb|EFE58682.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329724157|gb|EGG60675.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU144]
 gi|329735731|gb|EGG72012.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU028]
 gi|329736056|gb|EGG72329.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU045]
          Length = 643

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 252/657 (38%), Positives = 380/657 (57%), Gaps = 21/657 (3%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
              ++ + +DNY A  I++LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AG
Sbjct: 3   NTLSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 62

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           YA+ IEV ++ + ++ V DNGRGIPV+   K   +  +E+ILT LHAGGKF    Y++SG
Sbjct: 63  YASHIEVVIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 121

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG SVVNALS +L V V R  TI+ Q + +G+P   L++     +K GT I F+ D
Sbjct: 122 GLHGVGSSVVNALSQDLEVYVHRNGTIYHQAYKQGVPQFDLKEIGDT-DKTGTAIRFKAD 180

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            +IF +   ++   L K  +  A+L+  ++          E+     ++ +++ GG+K+Y
Sbjct: 181 KEIFTETTVYNYETLQKRIRELAFLNKGIQITLK-----DEREEEVREDSYHYEGGIKSY 235

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           +    EN+  +  E       K       VE A+ +       + +Y N I T EGGTHE
Sbjct: 236 VDLLNENKEPLHDEPIYIHQSKDDI---EVEIALQYNSGYATNLLTYANNIHTYEGGTHE 292

Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G + ALTR +  Y   ++  +        +D       ++S+   +P+F GQTKTKL +
Sbjct: 293 DGFKRALTRVLNSYGTQSKIIKEDKDRLSGEDTREGLTAVVSIKHGDPQFEGQTKTKLGN 352

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448
            + ++ V+    + F+ +L +NP     ++E  I  S  R+  +K RE   RK+A+    
Sbjct: 353 SEVRQVVDRLFSEHFERFLYENPSVGRIIVEKGIMASRARVAAKKAREVTRRKSALDVSS 412

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS      +E+F+VEGDSAGGS K  R+   QA+LPLRGKILNV  A  ++I 
Sbjct: 413 LPGKLADCSSKNPEESEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRIL 472

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           NN +I  ++ A G     ++     RY K++IMTDADVDGAHI +LLLTFFY+ M  LIE
Sbjct: 473 NNNEIRQMITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 532

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             ++++  PPL+++TQG +  Y  ++    K+ +E   +   K  I+R+KGLGEM A QL
Sbjct: 533 AGYVYIAQPPLYKLTQGKQKYYVFNDRELDKLKQEL--NPSPKWSIARYKGLGEMNADQL 590

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            ET M+   R++L+V +   +    D   +   LMG   + R +FI++ A +  ++ 
Sbjct: 591 WETTMNPEHRSMLQVRLEDAI----DADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 642


>gi|242243251|ref|ZP_04797696.1| DNA gyrase subunit B [Staphylococcus epidermidis W23144]
 gi|242233200|gb|EES35512.1| DNA gyrase subunit B [Staphylococcus epidermidis W23144]
 gi|319399910|gb|EFV88156.1| DNA gyrase, B subunit [Staphylococcus epidermidis FRI909]
          Length = 643

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 252/657 (38%), Positives = 380/657 (57%), Gaps = 21/657 (3%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
              ++ + +DNY A  I++LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AG
Sbjct: 3   NTLSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 62

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           YA+ IEV ++ + ++ V DNGRGIPV+   K   +  +E+ILT LHAGGKF    Y++SG
Sbjct: 63  YASHIEVIIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 121

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG SVVNALS +L V V R  TI+ Q + +G+P   L++     +K GT I F+ D
Sbjct: 122 GLHGVGSSVVNALSQDLEVYVHRNGTIYHQAYKQGVPQFDLKEIGDT-DKTGTAIRFKAD 180

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            +IF +   ++   L K  +  A+L+  ++          E+     ++ +++ GG+K+Y
Sbjct: 181 KEIFTETTVYNYETLQKRIRELAFLNKGIQITLK-----DEREEEVREDSYHYEGGIKSY 235

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           +    EN+  +  E       K       VE A+ +       + +Y N I T EGGTHE
Sbjct: 236 VDLLNENKEPLHDEPIYIHQSKDDI---EVEIALQYNSGYATNLLTYANNIHTYEGGTHE 292

Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G + ALTR +  Y   ++  +        +D       ++S+   +P+F GQTKTKL +
Sbjct: 293 DGFKRALTRVLNSYGTQSKIIKEDKDRLSGEDTREGLTAVVSIKHGDPQFEGQTKTKLGN 352

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448
            + ++ V+    + F+ +L +NP     ++E  I  S  R+  +K RE   RK+A+    
Sbjct: 353 SEVRQVVDRLFSEHFERFLYENPSVGRIIVEKGIMASRARVAAKKAREVTRRKSALDVSS 412

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS      +E+F+VEGDSAGGS K  R+   QA+LPLRGKILNV  A  ++I 
Sbjct: 413 LPGKLADCSSKNPEESEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRIL 472

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           NN +I  ++ A G     ++     RY K++IMTDADVDGAHI +LLLTFFY+ M  LIE
Sbjct: 473 NNNEIRQMITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 532

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             ++++  PPL+++TQG +  Y  ++    K+ +E   +   K  I+R+KGLGEM A QL
Sbjct: 533 AGYVYIAQPPLYKLTQGKQKYYVFNDRELDKLKQEL--NPSPKWSIARYKGLGEMNADQL 590

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            ET M+   R++L+V +   +    D   +   LMG   + R +FI++ A +  ++ 
Sbjct: 591 WETTMNPEHRSMLQVRLEDAI----DADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 642


>gi|28376979|ref|NP_783871.1| DNA gyrase, B subunit [Lactobacillus plantarum WCFS1]
 gi|254555174|ref|YP_003061591.1| DNA gyrase, B subunit [Lactobacillus plantarum JDM1]
 gi|300769110|ref|ZP_07078999.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308179196|ref|YP_003923324.1| DNA gyrase, B subunit [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28269810|emb|CAD62707.1| DNA gyrase, B subunit [Lactobacillus plantarum WCFS1]
 gi|254044101|gb|ACT60894.1| DNA gyrase, B subunit [Lactobacillus plantarum JDM1]
 gi|300493350|gb|EFK28529.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308044687|gb|ADN97230.1| DNA gyrase, B subunit [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 648

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 256/661 (38%), Positives = 376/661 (56%), Gaps = 20/661 (3%)

Query: 30  PDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEV 89
            ++        +  YDAS I++LEGLE VR RPGMYIG T  + LHHL  E++DN +DE 
Sbjct: 2   TENEKETKLEQAREYDASQIQVLEGLEAVRKRPGMYIGTTSSQGLHHLVWEIVDNGIDEA 61

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
           +AG+AN+I V+++ +  +TV DNGRGIPV+   K   K  LE + T LHAGGKF    Y+
Sbjct: 62  LAGFANVIHVTVEKDNSITVTDNGRGIPVDIQEK-TGKPALETVYTILHAGGKFGGGGYK 120

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRIT 208
           +SGGLHGVG SVVNALS  L V V R   ++   F RG   +P++      +   GT + 
Sbjct: 121 VSGGLHGVGASVVNALSSTLDVKVTRNGHVYYMDFERGKVKTPMKIIGDAPDDAHGTAVH 180

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F PDP IF +   +D   L    +  A+L+  ++     ++        P +++F + GG
Sbjct: 181 FVPDPDIFRETTTYDINILTTRIRELAFLNKGLRITIRDNR-----PDEPTEDDFLYEGG 235

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEG 327
           ++ Y++   +N++++  E    + E+ G    TVE A+ + ++      ++ N I T EG
Sbjct: 236 IRHYVEYLDKNKTVLFPEPIYVEGEQNGI---TVEVALQYTDDYHSNLMTFTNNIHTYEG 292

Query: 328 GTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTHE G + ALTR I  YA      +    ++  +D+      ++SV   +P+F GQTKT
Sbjct: 293 GTHEEGFKRALTRVINDYARKNNLLKESDANLSGEDVREGMTAVVSVKHPDPQFEGQTKT 352

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444
           KL + DA+  V+    + F  YL++NP  A K+++  +  S+ R+  ++ RE   +K+ +
Sbjct: 353 KLGNSDARAAVDRLFSEHFSKYLMENPSVARKVVDKGLLASKARVAAKRAREVTRKKSGL 412

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLAD S      +ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  
Sbjct: 413 EISNLPGKLADNSSKDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASI 472

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           +KI  N++I  L  A+G      +      Y K+IIMTDADVDGAHI +LLLT FY+ M 
Sbjct: 473 DKILANEEIRSLFTAMGTGFGGDFDLSKANYHKLIIMTDADVDGAHIRTLLLTLFYRYMR 532

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
            L++   +++  PPL+++ QG    Y   +E   +++ +       K  + R+KGLGEM 
Sbjct: 533 PLVDAGFVYIAQPPLYQVRQGKFVKYIDSDEELSEVMGQLAPS--PKPVVQRYKGLGEMD 590

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           A QL ET MD +KR LLRV          D     + LMG +   R +FI++ A F+ D+
Sbjct: 591 AEQLWETTMDPDKRRLLRVR----DEDAADADGVFSMLMGDQVKPRREFIEDNAKFVQDL 646

Query: 685 G 685
            
Sbjct: 647 D 647


>gi|170756292|ref|YP_001779632.1| DNA gyrase subunit B [Clostridium botulinum B1 str. Okra]
 gi|169121504|gb|ACA45340.1| DNA gyrase, B subunit [Clostridium botulinum B1 str. Okra]
          Length = 637

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 254/653 (38%), Positives = 372/653 (56%), Gaps = 22/653 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           +Q     YD S I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AG+   
Sbjct: 2   SQENKQVYDESQIQVLEGLEAVRKRPGMYIGSTSLRGLHHLVYEIVDNSIDEALAGFCTH 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV +  +  +TVVD+GRG+PV  H K   K  +E+I+T LHAGGKF    Y++SGGLHG
Sbjct: 62  IEVFIHKDNSITVVDDGRGMPVGMHSKV-KKPAVEVIMTILHAGGKFGGGGYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS++  V V R+  I+ QKF RGI  + L+      +  GT+I F+PD +IF
Sbjct: 121 VGASVVNALSEQCEVEVRREGHIWKQKFERGITKTGLDIVGDTEDH-GTKIYFKPDIEIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   F+   L    +  A+L+  +K   + ++         +KE F++ GGL++++   
Sbjct: 180 DEL-EFEYDTLAHRLRELAFLNKGIKISLTDER-------YDKKEMFHYEGGLRSFVLYL 231

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
             N+  +  +       K G     VE A+ + +     I S+ N I T EGGTH +G +
Sbjct: 232 NRNKEKLHQQPIYVDENKDG---CIVEIAMQYNDGYAENIFSFANNIDTIEGGTHLAGFK 288

Query: 336 VALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR I  YA      + I  ++  DD+      ++SV + +P+F GQTKTKL + + +
Sbjct: 289 SALTRVINDYARKFNYLKDIDKNLSGDDVREGLTAVISVKLTDPQFEGQTKTKLGNGEVR 348

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
             V+  +      +L +NP     ++E  +  S  R   ++ RE   RK+ +    LPGK
Sbjct: 349 GIVDTIVGQSIGSFLEENPNVGKIIIEKGLSASRAREAAKRARELTRRKSILESTSLPGK 408

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L+DCS       E+++VEGDSAGGSAKQ RNR  QA+LPL+GKI+NV     +KI  + +
Sbjct: 409 LSDCSSKDPSLCEIYLVEGDSAGGSAKQGRNREFQAILPLKGKIMNVEKQRLDKILASDE 468

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++ A G     ++  + +RY ++IIMTDADVDGAHI +LLLTFFY+ M +LIE+ H+
Sbjct: 469 IRAMITAFGAGIGKEFDIDKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMKELIEEGHV 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL+RI +  K  Y + +      L E          I R+KGLGEM   QL ET 
Sbjct: 529 YIAQPPLYRIYKAKKETYVYSDPELDAALLELGGKDTNT-NIQRYKGLGEMNPEQLWETT 587

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           MD   RTLL+V +   +    +  +    LMGTK + R  FI+  A  + ++ 
Sbjct: 588 MDPEHRTLLQVTVEDAM----EADEIFTILMGTKVEPRRDFIESNADKVVNLD 636


>gi|126739174|ref|ZP_01754868.1| DNA topoisomerase IV subunit B [Roseobacter sp. SK209-2-6]
 gi|126719791|gb|EBA16499.1| DNA topoisomerase IV subunit B [Roseobacter sp. SK209-2-6]
          Length = 652

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 347/652 (53%), Positives = 449/652 (68%), Gaps = 10/652 (1%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           +  AS+ YDASSI +LEGLEPVR RPGMYIGGTDE+ALHH+ +E++DN+MDE +AG+AN 
Sbjct: 7   STPASETYDASSIEVLEGLEPVRQRPGMYIGGTDERALHHMVAEILDNSMDEAVAGHANR 66

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV+L  +  +T+ DNGRGIP++ HPKFP+KS LE+IL TLHAGGKF    Y+ SGGLHG
Sbjct: 67  IEVTLHSDFSVTISDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQTSGGLHG 126

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALSD + V VA+   +F Q+FSRG+PL  +EK     NKRGT +TF  D +IF
Sbjct: 127 VGSSVVNALSDSMVVQVAKNKELFEQRFSRGLPLGGVEKIGAAPNKRGTFVTFHADEEIF 186

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                F   RL  + +SKAYL   V+  W  + +  E    P +  F+FPGGLK YL   
Sbjct: 187 -GHHRFKPKRLFTLVRSKAYLFSGVEIRWKSEIDDNE---TPTEATFHFPGGLKDYLTEV 242

Query: 277 LENRSLISSEIFTGKTE--KKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESG 333
           L   S+ + + F GK E  +K    G VEWAI W    +    SYCNT+ T EGGTH +G
Sbjct: 243 LGKSSIYADQPFAGKVEFREKFGEPGYVEWAINWTPSRDGFTQSYCNTVPTPEGGTHVAG 302

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
              A+ +GIK Y EL  NK+A  I  DDLM     ++S FI +P F GQTK +L +  A 
Sbjct: 303 FWSAILKGIKAYGELVGNKKAGQITRDDLMAGGCALVSCFIADPAFVGQTKDRLSTESAS 362

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
           + VEN++RD FD++L  +   A  +L+++I R+EERLRRR+++E  RK+A +KLRLPGKL
Sbjct: 363 KMVENSVRDHFDNWLAADTKSAGAILDFLILRAEERLRRRQEKETQRKSATKKLRLPGKL 422

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
            DC+     GTELFIVEGDSAGGS K ARNR NQA+LPL+GKILNV  A S K+ +N +I
Sbjct: 423 TDCTSKDRSGTELFIVEGDSAGGSGKGARNRVNQALLPLKGKILNVLGAASNKLGSNAEI 482

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            DL +ALG    +++  +DLRY+K+IIMTDADVDGAHIASLL+TFF+ +M  LI+  HL+
Sbjct: 483 NDLCEALGVGLGTKFNLDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDGGHLY 542

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           L  PPLFR+TQG K VY  DE  + K LE+    GKGKI++SRFKGLGEM A  LKET M
Sbjct: 543 LACPPLFRLTQGAKRVYCLDEAERDKWLEK-GLGGKGKIDVSRFKGLGEMDAKDLKETTM 601

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D   R L+RV I++D     +T D + +LMG K + RF++IQE A F++++ 
Sbjct: 602 DPTTRKLIRVTIDEDE--PGETGDLVERLMGKKPELRFQYIQENAKFVEELD 651


>gi|312142414|ref|YP_003993860.1| DNA gyrase, B subunit [Halanaerobium sp. 'sapolanicus']
 gi|311903065|gb|ADQ13506.1| DNA gyrase, B subunit [Halanaerobium sp. 'sapolanicus']
          Length = 640

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 256/650 (39%), Positives = 389/650 (59%), Gaps = 23/650 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY+A  I++LEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AGY   I V +
Sbjct: 7   SNYEAEHIQVLEGLEAVRKRPGMYIGSTSTEGLHHLVYEVVDNSIDEAMAGYCTEIIVEI 66

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
                + V DNGRGIPVENHPK  +K  +E+++TTLHAGGKF    Y++SGGLHGVGISV
Sbjct: 67  QPGNIIKVKDNGRGIPVENHPKI-DKPAVEVVMTTLHAGGKFGGEGYKVSGGLHGVGISV 125

Query: 162 VNALSDELHVTV-ARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNAL++ + V +  +   ++ QK+ RG+P   L        +  GT I F+ DP+IF + 
Sbjct: 126 VNALTEWMEVEIAWKDGKVYKQKYERGVPQHELRAIGSCDSDCTGTTIEFKADPQIFEEI 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             ++   L +  +  A+L+  +K      +    K        + + GGL ++++   ++
Sbjct: 186 -DYEYRNLAQRLKELAFLNKGLKIKIIDSRVDETKEDE-----YQYDGGLVSFVKYLNQS 239

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  +  +    +TE +    G++E AI + +     I S+ N I T EGGTH SG + A+
Sbjct: 240 KKPLYPDPIYLETEGE---EGSLEVAIQYHQGYNSSIFSFANNINTKEGGTHLSGFKSAI 296

Query: 339 TRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR    YA      +    +    D+      I+SV + +P+F GQTKTKL + + +  V
Sbjct: 297 TRTFNDYARKKNILKDSDDNFKGQDIREGMTAIISVKLADPQFEGQTKTKLGNSEMRGFV 356

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
           ++A+      +L +NP  A  +++  +  +  R   RK R+   RK+A+    LPGKLAD
Sbjct: 357 DSAVSSFLKTFLEENPKIAKVIVDKALSAARARKAARKARDLTRRKSALTSTALPGKLAD 416

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C++  A  TE++IVEGDSAGGSAKQ RNR  QA+LPL+GKILNV  +   KI NN +I  
Sbjct: 417 CAKRQAKDTEVYIVEGDSAGGSAKQGRNREFQAILPLKGKILNVEKSRLNKILNNDEIRA 476

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           L+ A+G     ++   +LRYE++IIMTDAD+DGAHI +LLLTFFY+ M  L+E  ++++ 
Sbjct: 477 LITAIGTGVAEEFDINNLRYERIIIMTDADIDGAHIRTLLLTFFYRYMRPLLENGNIYIA 536

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+++ +G K  Y ++++  +++L+E    G+ ++ + R+KGLGEM   QL +T MD 
Sbjct: 537 QPPLYKVKKGRKEEYVYNDKALKELLDEI---GRDRVSMQRYKGLGEMNPGQLWDTTMDP 593

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           + R LL+V I   +       ++ + LMG K + R KFIQE A+ + ++ 
Sbjct: 594 DNRILLQVNIEDAI----LADETFSILMGDKVEPRRKFIQENAAQVKNLD 639


>gi|313893498|ref|ZP_07827068.1| DNA gyrase, B subunit [Veillonella sp. oral taxon 158 str. F0412]
 gi|313441941|gb|EFR60363.1| DNA gyrase, B subunit [Veillonella sp. oral taxon 158 str. F0412]
          Length = 633

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 253/650 (38%), Positives = 367/650 (56%), Gaps = 23/650 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
              NY A +I++LEGL+ VR RPGMYIG T  + LHHL  EV+DN++DE +AGYA  IEV
Sbjct: 2   PEQNYGAQNIQVLEGLDAVRKRPGMYIGSTSARGLHHLVYEVVDNSVDEALAGYATHIEV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           S++ +  +TVVD+GRGIP   H      S +E++LT LHAGGKF    Y++SGGLHGVGI
Sbjct: 62  SINPDNSITVVDDGRGIPTGMHE--SGMSAVELVLTKLHAGGKFGGGGYKVSGGLHGVGI 119

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS    V VA+   +    F+RG   S L +  K     GT + F+PD +IF   
Sbjct: 120 SVVNALSKWTKVQVAQNGIVQEISFARGNKTSELHEIGKAEG-TGTTVIFKPDAEIFETT 178

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L    Q  A+L+  ++   S  +        P  E F++ GGL +++    EN
Sbjct: 179 V-FSFDTLKMRLQELAFLNKGLRITLSDLR-----QEEPRVESFHYEGGLSSFITFLNEN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVAL 338
           + +++  +   +  K       V+ A+ + +   E   S+ N I T +GGTH SG R AL
Sbjct: 233 KEVVNPTVINIENTKDDV---VVDVALQYNDTYSENLLSFVNNINTIDGGTHLSGFRAAL 289

Query: 339 TRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y       +    ++  +D+      ++SV + EP+F GQTKTKL + + +   
Sbjct: 290 TRTLNDYGRKAGLIKENESNLSGEDVREGLTAVVSVKVLEPQFEGQTKTKLGNSEVKGIT 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           +  + D    +  ++P +A K++E   +        R+ +    RK A+    LPGKLAD
Sbjct: 350 DVIVSDGLKTFFEEHPQDAKKIIEKATMASRAREAARKARDLTRRKNALEISSLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS+     TE+++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI  N +I  
Sbjct: 410 CSEKDTSMTEIYLVEGDSAGGSAKQGRDRRYQAILPLRGKILNVEKARLDKILANNEIRS 469

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ A G     ++     RY K+IIMTDADVDGAHI +LLLTFFY+ M  L+E+ H+++ 
Sbjct: 470 MITAFGTGIGEEFDITKSRYNKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIYIA 529

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL++I +G    Y + +      L+E  + G   I I R+KGLGEM   QL ET M+ 
Sbjct: 530 QPPLYQIKKGKSQWYVYSDAELAAKLDEVGREG---IAIQRYKGLGEMNPEQLWETTMNP 586

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             RT+L+V +   +    +       LMG K + R KFI++ A ++ ++ 
Sbjct: 587 ENRTILQVSLEDSI----EADKIFTVLMGDKVEPRRKFIEDNAKYVRNLD 632


>gi|325846392|ref|ZP_08169361.1| DNA gyrase, B subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481576|gb|EGC84616.1| DNA gyrase, B subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 634

 Score =  619 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 262/647 (40%), Positives = 387/647 (59%), Gaps = 22/647 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+AS+IR+L+GLEPVR+RPGMYIG T E+ LHHL  EV+DN++DE +AG  + I++S+D
Sbjct: 5   QYNASNIRVLKGLEPVRLRPGMYIGSTSERGLHHLVYEVVDNSVDEALAGRCDYIKISID 64

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            N  +TV D+G GIP+E HP+   KSTLE +LT LHAGGKFD+  Y++SGGLHGVG+SVV
Sbjct: 65  ENNIVTVEDDGSGIPIEKHPQ-TGKSTLETVLTVLHAGGKFDDKAYKVSGGLHGVGVSVV 123

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+ L   V R+  I+   F RG P S LE     +   GT+I+F+ DP+IF     +
Sbjct: 124 NALSEYLIAEVKREGHIYRMTFERGKPTSDLEIIGDTKE-TGTKISFKADPEIFDVTV-Y 181

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L    +  A+L+  V+  +   ++ +E        EF + GG+K +++    N++ 
Sbjct: 182 NKNTLENRFREMAFLNKGVRLIFEDKRDESE-------VEFKYDGGIKEFVKYLNRNKTP 234

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           I  EI   +  ++ T    VE +  + +     I ++ N I T EGGTH SG R ALTR 
Sbjct: 235 IFKEIPYFEGRQEST---EVEISFQYTDGYSENILTFANNIYTVEGGTHLSGFRSALTRS 291

Query: 342 IKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +  YA      +    ++  DD       I+SV I  P+F GQTK KL + + +  V+  
Sbjct: 292 VNDYARKYNLLKENEDNLQGDDAREGITAIISVKISNPQFEGQTKGKLGNSEVRGAVDAF 351

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
             +    +L +NP  A  +++  +     R   RK R+   +++ +    LPGKLADC  
Sbjct: 352 FSEHMGSFLEENPKIAKTIIQKALASRRAREAARKARDLTRKRSILDSTTLPGKLADCQS 411

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E+FIVEG+SAGGSAK  R+   QA+LPLRGKI+NV  A  ++I N ++I  ++ 
Sbjct: 412 QDIGENEIFIVEGNSAGGSAKGGRDNRIQAILPLRGKIMNVEKANLDRILNYEEIKSMIT 471

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A G     ++    LRY K+IIMTDADVDGAHI +LLLTFFY+ M  L+++ H+++  PP
Sbjct: 472 AFGTGIGQEFDLSKLRYGKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVDEGHIYIAQPP 531

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L++I+ G K  Y + ++  + I++E+K       +ISR+KGLGEM A QL ET MD   R
Sbjct: 532 LYKISSGKKERYCYTDKELEDIVKEWKVDN---YKISRYKGLGEMNAEQLWETTMDPENR 588

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            LL+V   +  +S   T  + + LMG K + R +FI+E A +++++ 
Sbjct: 589 VLLQV--YEKEDSQMSTDATFSMLMGEKVEPRREFIEENAQYVENLD 633


>gi|150020566|ref|YP_001305920.1| DNA gyrase, B subunit [Thermosipho melanesiensis BI429]
 gi|149793087|gb|ABR30535.1| DNA gyrase, B subunit [Thermosipho melanesiensis BI429]
          Length = 627

 Score =  619 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 255/645 (39%), Positives = 374/645 (57%), Gaps = 22/645 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y+A +I++L+GLEPVR RPGMYIG T +  LHHL  E++DN++DE + GY + I V++ 
Sbjct: 2   DYNAQNIKVLKGLEPVRQRPGMYIGSTGKAGLHHLVYEIVDNSVDEALQGYCDKIYVTIF 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G + + DNGRGIPV+ HP+   KS LE+++TTLHAGGKF   +Y++SGGLHGVG SVV
Sbjct: 62  KDGSVEIKDNGRGIPVDIHPE-TGKSALEVVMTTLHAGGKFSKDSYKVSGGLHGVGASVV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+ L V V R   I+ QK+ RG PL+ +    +  + RGT + F+PD +IF     F
Sbjct: 121 NALSEWLEVEVHRDGKIYYQKYQRGTPLTEVRIIGET-DYRGTIVRFKPDTEIFSTV-EF 178

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D+  +L   +  A+L+  +   +  ++E  EK        F+F GGLK ++    +    
Sbjct: 179 DSDTILIRLRELAFLNPNITVVFKDERENIEKT-------FHFTGGLKEFVVHLSKGTRS 231

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGI 342
           +   I               ++  +   +  +I S+ N I T +GGTH +G + A TR +
Sbjct: 232 LHEPILVSGEYNSIKVDVCFQYTAS---DFEKIYSFVNNIRTVDGGTHVTGFKTAFTRVV 288

Query: 343 KKYAELTQNKRAISIISDDLMISAVGILSVFIRE-PEFAGQTKTKLVSLDAQRTVENALR 401
            +  + T   +  ++  +D+    V I+SV + + PEF GQTK+KL + + Q  V   +R
Sbjct: 289 NELGKKTGQLKKDTLRGEDIREGIVAIVSVLMSKTPEFEGQTKSKLGNEEVQEAVAKVVR 348

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNI 460
           +    Y   N      +++  +E  + R   +  RE+  RK+      LPGKLADC    
Sbjct: 349 EKLLEYFESNENTLKIIIQKALEAKKAREAAKHAREMIKRKSVFGSSSLPGKLADCITKK 408

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +ELFIVEGDSAGGSAKQAR+R+ QA+LPLRGKILNV  +   K+  N+QI D++ AL
Sbjct: 409 MEESELFIVEGDSAGGSAKQARDRNFQAILPLRGKILNVEKSSWLKLLKNEQIRDIITAL 468

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           G      +    LRY K+IIMTDADVDGAHI +LLLT FY+ M +LI++  +++  PPL+
Sbjct: 469 GTGIGDDFDISKLRYGKIIIMTDADVDGAHIRTLLLTLFYRYMKELIDEGRIYIAQPPLY 528

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           ++    K  Y + +E  ++  E  K     K EI R+KGLGEM   QL ET MD  KR L
Sbjct: 529 KVNVNKKIYYFYSDEELEEFKENLKD---KKFEIQRYKGLGEMNPQQLWETTMDPEKRKL 585

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           L+VEI     + +        LMG+  + R +FI   A  + ++ 
Sbjct: 586 LKVEIEDAEEADE----LFEMLMGSDTESRKEFIFRHALQVKEID 626


>gi|229826860|ref|ZP_04452929.1| hypothetical protein GCWU000182_02244 [Abiotrophia defectiva ATCC
           49176]
 gi|229788478|gb|EEP24592.1| hypothetical protein GCWU000182_02244 [Abiotrophia defectiva ATCC
           49176]
          Length = 636

 Score =  619 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 251/649 (38%), Positives = 382/649 (58%), Gaps = 19/649 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S  Y A  I+ILEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AG  + IEV 
Sbjct: 2   SAEYGADQIQILEGLEAVRKRPGMYIGSTSLKGLHHLVYEIVDNSVDEALAGECSHIEVF 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TVVD+GRGIPV  + K      ++++ T LHAGGKF    Y++SGGLHGVG S
Sbjct: 62  INEDNSITVVDDGRGIPVGINSK-SGLPAVQVVFTVLHAGGKFGGGGYKVSGGLHGVGAS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ L V V      + Q++ RG  ++ L +      + GT +TF PD  IF +  
Sbjct: 121 VVNALSEWLEVLVETDGKAYKQRYERGKVITELTEIG-TTERHGTTVTFLPDKDIFEETV 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F+ + +    +  A+L+  ++   +  +E  +K      + F++ GG+  Y+    +N+
Sbjct: 180 -FEYSTIKHRLREMAFLTKGLRISLTDRREEGKKT-----DSFHYEGGIMEYVSYLNKNQ 233

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           +++  +I   + +K       VE A+   +       S+ N I T EGGTH +G R A+T
Sbjct: 234 TVLYDKIIYCEGKKGTVQ---VEVALQHNDGYNEGCYSFVNNINTPEGGTHLTGFRNAIT 290

Query: 340 RGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           +   +YA++ +  +        +D+      I+S+ I EP+F GQTK KL + +A+  VE
Sbjct: 291 KTFNEYAKIMKLVKDSDPALTGEDIREGMTAIVSIKIPEPQFEGQTKQKLGNSEARGAVE 350

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
               +    +L QNP     ++E  +     R   RK R+   RKTA+  + LPGKLADC
Sbjct: 351 TIASEQIMIFLEQNPAVGKMIVEKALLAQRARDAARKARDLTRRKTALEYMNLPGKLADC 410

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S       E+++VEGDSAGGSAK AR+R+ QA+LPLRGKILNV  +  +KI  N++I  +
Sbjct: 411 SDKNPDNCEIYLVEGDSAGGSAKDARDRATQAILPLRGKILNVEKSRLDKILENKEIQSM 470

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A G      +    LRY+K+IIMTDAD+DGAHI +L+LTF Y+ M +LI+Q H++L  
Sbjct: 471 ITAFGTGIHDDFDISKLRYKKIIIMTDADIDGAHIDTLMLTFIYRFMPELIKQGHVYLAQ 530

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+++ +G K  YA++++  + I+ E  +    K  I R+KGLGEM A QL ET MD  
Sbjct: 531 PPLYKVEKGNKIWYAYNDKELENIMSEIGRDSNNK--IQRYKGLGEMDAEQLWETTMDPE 588

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +R LL+V +++   +  +   + N LMG K + R +FI++ A ++ ++ 
Sbjct: 589 RRVLLKVMMDE--ENASEIDLTFNTLMGDKVEPRREFIEQNAKYVRNLD 635


>gi|241204755|ref|YP_002975851.1| DNA topoisomerase IV subunit B [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240858645|gb|ACS56312.1| DNA topoisomerase IV, B subunit [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 699

 Score =  619 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 443/701 (63%), Positives = 541/701 (77%), Gaps = 22/701 (3%)

Query: 3   DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSA-----------------SDNYD 45
           DDS DLFS +P   +    +   +         A  +A                 SD+Y 
Sbjct: 2   DDSNDLFSGMPLSEKREEAQKPAAPVERPPAPAAPVAAAPPAAGASARPAPAASNSDDYG 61

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNG 105
           ASSIR+LEGLEPVRMRPGMYIGGTDEKALHHLF+EVIDNAMDE +AG+AN IEV LD  G
Sbjct: 62  ASSIRVLEGLEPVRMRPGMYIGGTDEKALHHLFAEVIDNAMDEAVAGHANFIEVYLDLEG 121

Query: 106 FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNAL 165
           +LTV DNGRGIPVENHP+ P KSTLE+I+T LHAGGKFD   YE SGGLHGVG+SVVNAL
Sbjct: 122 YLTVSDNGRGIPVENHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVSVVNAL 181

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225
           SD+L V VAR   ++ Q+FSRG+P   LE+   V N+RGTR+ F PDP+IFGD   FDAA
Sbjct: 182 SDDLEVEVARNRKLYRQRFSRGLPQGGLEELGDVHNRRGTRVRFHPDPQIFGDHMKFDAA 241

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEI-AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
           R+ +M +SKAYL G V+  WSC+  +  E   +P+K  F+FPGGLK YLQ  +     ++
Sbjct: 242 RVFRMARSKAYLFGGVEIRWSCESGVLPEGSEVPDKAVFHFPGGLKDYLQATMGKEFTVT 301

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKK 344
            EIF GKTEK  +  G++EWAI W   +P++ SYCNTI T EGGTHE+GLR+ALT+G+K 
Sbjct: 302 REIFAGKTEK-VSGHGSMEWAITWYGGDPQVHSYCNTIPTTEGGTHEAGLRIALTKGLKA 360

Query: 345 YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF 404
           YAELTQNKRA  I +DD+MISAVG+LSVFIREPEF GQTK +L +++AQR VENALRDPF
Sbjct: 361 YAELTQNKRAAQITTDDVMISAVGMLSVFIREPEFVGQTKDRLATVEAQRIVENALRDPF 420

Query: 405 DHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGT 464
           DHYL  NP E+ KLL+WVIER+EERLRRRK++EVNRKTA+RKLRLPGKLADCSQN A G 
Sbjct: 421 DHYLADNPNESAKLLDWVIERAEERLRRRKEKEVNRKTAVRKLRLPGKLADCSQNTAVGA 480

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           ELFIVEGDSAGGSAKQARNR+NQA+LPLRGKILNVASAG EK+  NQQ+ DLVQALGC T
Sbjct: 481 ELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLGANQQLADLVQALGCGT 540

Query: 525 RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ 584
           RS+YR+EDLRYE++I+MTDADVDGAHIASLL+TFFYQEM +L+   HLFL  PPL++ITQ
Sbjct: 541 RSKYRDEDLRYERIIVMTDADVDGAHIASLLITFFYQEMPELVRGGHLFLAVPPLYKITQ 600

Query: 585 GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644
           G KS YA D+ H+ ++++   K GK K+EISRFKGLGEM+ +QLKET MD +KRTLL+V 
Sbjct: 601 GAKSAYARDDNHRAELMQTEFK-GKAKVEISRFKGLGEMMPAQLKETTMDPSKRTLLKVL 659

Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           I++     + T+ +++ LMGTK + RF+FIQ+RA+F +++ 
Sbjct: 660 IDEV--DFEGTRAAVDDLMGTKPEARFRFIQDRAAFAENLD 698


>gi|308066844|ref|YP_003868449.1| DNA gyrase subunit B [Paenibacillus polymyxa E681]
 gi|305856123|gb|ADM67911.1| DNA gyrase subunit B [Paenibacillus polymyxa E681]
          Length = 636

 Score =  619 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 261/647 (40%), Positives = 380/647 (58%), Gaps = 22/647 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +YDA  I++LEGLE VR RPGMYIG T  K LHHL  EV+DN++DE +AGY + I+V + 
Sbjct: 7   SYDAGEIQVLEGLEAVRKRPGMYIGSTSAKGLHHLVWEVVDNSIDEALAGYCDSIQVVVH 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV DNGRGIPV  H K   KS LE+++T LHAGGKF    Y++SGGLHGVG+SVV
Sbjct: 67  EDNSVTVTDNGRGIPVSEHAKM-KKSALEVVMTVLHAGGKFGGGGYKVSGGLHGVGVSVV 125

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS ++ V V R   ++ Q++ RG P   +       ++ GT+ TF PD +IF +   +
Sbjct: 126 NALSSKMIVHVKRDGHLYEQEYHRGAPQYDVRVIGDT-DETGTQTTFYPDDQIFTETTVY 184

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L    +  A+L+  +    + ++           + F++ GG+  Y+Q   + R  
Sbjct: 185 DYDTLQTRIRELAFLNKGIAISLTDER-------TGASDTFHYEGGISEYVQFLNQKREA 237

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +  +    +  +       VE A+ + +     I S+ N I T EGGTHESG + ALTR 
Sbjct: 238 LHEQPIYVEGSRDMIQ---VEVALQYNDSYTENIYSFANNINTHEGGTHESGFKSALTRI 294

Query: 342 IKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  YA      +    ++  DD+      I+SV I EP+F GQTKTKL + + +  VE+ 
Sbjct: 295 INDYARKNGLIKDNNANLTGDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGIVESL 354

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
             +    +L +NP  + ++++  ++ +  R   RK RE   RK+A+    LPGKLADCS 
Sbjct: 355 FAEKLQEFLEENPSVSRRVVDKSLQAARAREAARKARELTRRKSALEISSLPGKLADCSS 414

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
             A  +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I ++ +I  +V 
Sbjct: 415 KDASISELYIVEGDSAGGSAKQGRDRHFQAILPIRGKILNVEKARLDRILSSDEIRSMVT 474

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+G      +     RY KVIIMTDADVDGAHI +LLLTFFY+ M  +I+  ++++  PP
Sbjct: 475 AMGTGIGDDFDIAKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRKIIDAGYIYIAQPP 534

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           LF++ +     YA+ E  + +I+ EF ++   K  + R+KGLGEM A+QL ET MD   R
Sbjct: 535 LFKVERNKVVRYANSEAERDEIIREFGEN--AKYNVQRYKGLGEMNATQLWETTMDPESR 592

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T+L+V ++  +          N LMG   + R  FIQE A ++ ++ 
Sbjct: 593 TMLQVTVSDAM----LADTLFNTLMGDNVEPRRDFIQEHAKYVKNLD 635


>gi|295090282|emb|CBK76389.1| DNA gyrase subunit B [Clostridium cf. saccharolyticum K10]
 gi|295115477|emb|CBL36324.1| DNA gyrase subunit B [butyrate-producing bacterium SM4/1]
          Length = 636

 Score =  619 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 253/644 (39%), Positives = 370/644 (57%), Gaps = 20/644 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y A  I+ILEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AG+ + I+V +
Sbjct: 3   SEYSADQIQILEGLEAVRKRPGMYIGSTSIRGLHHLVYEIVDNSVDEALAGFCSEIDVQI 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +  +TV DNGRGIPV+   K      +E++ T LHAGGKF    Y++SGGLHGVG SV
Sbjct: 63  NADNSITVTDNGRGIPVDIQKKA-GIPAVEVVFTVLHAGGKFGGGGYKVSGGLHGVGASV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKA 220
           VNALS+ L V + +   I++Q++ RG  + PL  K     +K GTR+TF PD +IF +  
Sbjct: 122 VNALSEWLEVDIYKDGHIYNQRYERGKVMYPLTIKGDCPADKHGTRVTFLPDKEIFEETV 181

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +D   L    +  A+L+  +K     D+E        +++ F++ GG+K ++       
Sbjct: 182 -YDYDTLKVRLRETAFLTKNLKIILRDDRE------EKQEKTFHYEGGIKEFVTYLNRGG 234

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
             + + +   +  +   +   VE A+   +     I ++ N I T EGGTH SG + ALT
Sbjct: 235 ESLYAPVIYCEGVRDNVY---VEVAMQHNDSYTENIYTFVNNINTPEGGTHLSGFKTALT 291

Query: 340 RGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
                YA   +  +        +D+      I+SV + EP+F GQTK KL + +A+  V 
Sbjct: 292 NTFNDYARKNKLLKENEPSLSGEDIREGLTAIISVKLEEPQFEGQTKQKLGNTEARAAVA 351

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADC 456
             + +   ++L QNP  A  + E  I     R   R+      RK+A+  L LPGKLADC
Sbjct: 352 GIVSEQLTYFLEQNPGVAKIISEKSILAQRARAAARRAREMTRRKSALDGLALPGKLADC 411

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S       E+++VEGDSAGGSAK+AR+++NQA+LPLRGKILNV  A  +KI  N +I  +
Sbjct: 412 SDKNPENCEIYLVEGDSAGGSAKEARSKANQAILPLRGKILNVEKARLDKIYANAEIRSM 471

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A G      +    LRY K+IIMTDADVDGAHI++LLLTF Y+ M +LI+Q +++L  
Sbjct: 472 ITAFGTGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFIYRFMPELIKQGYVYLAQ 531

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL++I +  +  YA+ +     IL E  +    K  I R+KGLGEM A QL ET MD  
Sbjct: 532 PPLYKIEKNKRIWYAYSDAELNSILSEIGRDQNNK--IQRYKGLGEMDAEQLWETTMDPE 589

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           +R LLRV +++   +  +   +   LMG + + R +FI+  A +
Sbjct: 590 RRILLRVTMDE--ETTSEVDLTFTTLMGDQVEPRREFIEANAKY 631


>gi|212697384|ref|ZP_03305512.1| hypothetical protein ANHYDRO_01954 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675576|gb|EEB35183.1| hypothetical protein ANHYDRO_01954 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 634

 Score =  618 bits (1594), Expect = e-175,   Method: Composition-based stats.
 Identities = 260/647 (40%), Positives = 387/647 (59%), Gaps = 22/647 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+AS+IR+L+GLEPVR+RPGMYIG T E+ LHHL  EV+DN++DE +AG  + I++S+D
Sbjct: 5   QYNASNIRVLKGLEPVRLRPGMYIGSTSERGLHHLVYEVVDNSVDEALAGRCDYIKISID 64

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            N  +TV D+G GIP+E HP+   KSTLE +LT LHAGGKFD+  Y++SGGLHGVG+SVV
Sbjct: 65  ENNIVTVEDDGSGIPIEKHPQ-TGKSTLETVLTVLHAGGKFDDKAYKVSGGLHGVGVSVV 123

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+ L   V R+  I+   F RG   S LE     +   GT+I+F+ DP+IF     +
Sbjct: 124 NALSEYLIAEVKREGHIYRMTFERGKSTSDLEIIGDTKE-TGTKISFKADPEIFDVTV-Y 181

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L    +  A+L+  V+  +   ++ +E        EF + GG+K +++    N++ 
Sbjct: 182 NKNTLENRFREMAFLNKGVRLIFEDKRDESE-------VEFKYDGGIKEFVKYLNRNKTP 234

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           I  EI   +  ++ T    VE +  + +     I ++ N I T EGGTH SG R ALTR 
Sbjct: 235 IFKEIPYFEGRQEST---EVEISFQYTDGYSENILTFANNIYTVEGGTHLSGFRSALTRS 291

Query: 342 IKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +  YA      +    ++  DD       I+SV I  P+F GQTK KL + + +  V+  
Sbjct: 292 VNDYARKYNLLKENEDNLQGDDAREGITAIISVKISNPQFEGQTKGKLGNSEVRGAVDAF 351

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
             +    +L +NP  A  +++  +     R   RK R+   +++ +    LPGKLADC  
Sbjct: 352 FSEHMGSFLEENPKIAKTIIQKALASRRAREAARKARDLTRKRSILDSTTLPGKLADCQS 411

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E+FIVEG+SAGGSAK  R+   QA+LPLRGKI+NV  A  ++I N ++I  ++ 
Sbjct: 412 QDIGENEIFIVEGNSAGGSAKGGRDNRIQAILPLRGKIMNVEKANLDRILNYEEIKSMIT 471

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A G     ++    LRY K+IIMTDADVDGAHI +LLLTFFY+ M  L+++ H+++  PP
Sbjct: 472 AFGTGIGQEFDLSKLRYGKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVDEGHIYIAQPP 531

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L++++ G K  Y + ++  ++I++E+K       +ISR+KGLGEM A QL ET MD   R
Sbjct: 532 LYKVSSGKKERYCYTDKELEEIVKEWKTDN---YKISRYKGLGEMNAEQLWETTMDPENR 588

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            LL+V   +  +S   T  + + LMG K + R +FI+E A +++++ 
Sbjct: 589 VLLQV--YEKEDSQMSTDATFSMLMGEKVEPRREFIEENAQYVENLD 633


>gi|49474260|ref|YP_032302.1| DNA topoisomerase IV subunit B [Bartonella quintana str. Toulouse]
 gi|49239764|emb|CAF26151.1| DNA gyrase subunit B [Bartonella quintana str. Toulouse]
          Length = 685

 Score =  618 bits (1594), Expect = e-175,   Method: Composition-based stats.
 Identities = 428/688 (62%), Positives = 528/688 (76%), Gaps = 7/688 (1%)

Query: 1   MTDDSIDLFSTLPPQSQG--SSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPV 58
           M+D + DLFS L        + EK  K     +       +  DNY+A SIR+L+GLEPV
Sbjct: 1   MSDKNKDLFSILNKAQSQINTKEKNLKPSTSSEVMTSKKDTQEDNYNALSIRVLKGLEPV 60

Query: 59  RMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPV 118
           R+RPGMYIGGTD KALHHLF+E+IDNAMDE +AGYA+LI+VSL+ NG+LTV DNGRGIPV
Sbjct: 61  RLRPGMYIGGTDSKALHHLFAEIIDNAMDEAVAGYADLIDVSLERNGYLTVTDNGRGIPV 120

Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178
           ENHP+  +KSTLE+I+T LH+GGKFD   Y+ +GGLHGVGISVVNALSD++ V VAR+  
Sbjct: 121 ENHPQMLDKSTLEVIMTQLHSGGKFDGKAYQTAGGLHGVGISVVNALSDDMEVEVARERK 180

Query: 179 IFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLS 238
           ++ Q+FSRGIP S LE    V N+RGTR+ F PD +IFG+KA FD  ++ +M +SKAYL 
Sbjct: 181 LYRQRFSRGIPQSRLEDLGYVYNRRGTRVRFHPDSEIFGEKAAFDPEKIYEMARSKAYLF 240

Query: 239 GRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           G VK  W+CD  I E    IPEK  F+FP GLK YL + L++   ++SEIF+GKT+    
Sbjct: 241 GGVKIRWNCDPVILEGTKNIPEKAVFHFPDGLKDYLLSSLKDEYRVTSEIFSGKTKHYND 300

Query: 298 HRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI 357
           H  ++EWAIAW   NP + SYCNTI T EGGTHE GLR AL RG+K YAEL  NKRA  I
Sbjct: 301 HS-SIEWAIAWHGGNPYVQSYCNTIPTREGGTHEIGLRQALLRGLKSYAELIGNKRAAVI 359

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
            SDD+MIS   ILSVFI+ PEF GQTK +L +++AQR VENA+RDPFDH+L  +P E+TK
Sbjct: 360 TSDDVMISTAAILSVFIKNPEFVGQTKDRLATIEAQRIVENAIRDPFDHWLTNSPQESTK 419

Query: 418 LLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           LL+WVIER+EER+RRR+ RE+NRKTA+RKLRLPGKLADCSQN A G ELFIVEGDSAGGS
Sbjct: 420 LLDWVIERAEERIRRRQDREINRKTAVRKLRLPGKLADCSQNCAAGAELFIVEGDSAGGS 479

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AKQARNR+NQA+LPLRGKILNVASA  EK+ ++Q I DL+ ALGC TRS+YRE+DLRYE+
Sbjct: 480 AKQARNRANQAILPLRGKILNVASAAHEKMNSSQTIGDLILALGCGTRSKYREKDLRYER 539

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           +IIMTDADVDGAHIASLL+TFF+QEM DLI Q HL+L  PPL+RI+QG K  YA D+ HK
Sbjct: 540 IIIMTDADVDGAHIASLLITFFFQEMPDLIRQGHLYLAVPPLYRISQGGKVAYARDDTHK 599

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
            ++L+  +  GK KIEI RFKGLGEM A QLKET M   KRTLLRV I  D+  +++T+ 
Sbjct: 600 NELLKT-EFTGKAKIEIGRFKGLGEMRAEQLKETTMHPQKRTLLRVSI--DIAEMQETKH 656

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
           ++  LMGTK++ RF+FIQE ++F  ++ 
Sbjct: 657 TVESLMGTKSEARFRFIQENSTFASNLD 684


>gi|303230676|ref|ZP_07317426.1| DNA gyrase, B subunit [Veillonella atypica ACS-049-V-Sch6]
 gi|302514731|gb|EFL56723.1| DNA gyrase, B subunit [Veillonella atypica ACS-049-V-Sch6]
          Length = 633

 Score =  618 bits (1594), Expect = e-175,   Method: Composition-based stats.
 Identities = 254/650 (39%), Positives = 372/650 (57%), Gaps = 23/650 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A +NY A +I++LEGL+ VR RPGMYIG T  + LHHL  EV+DN++DE +AGYA  IEV
Sbjct: 2   AEENYGAQNIQVLEGLDAVRKRPGMYIGSTSIRGLHHLVYEVVDNSVDEALAGYATHIEV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           S++ +  +TVVD+GRGIP   H      S +E++LT LHAGGKF    Y++SGGLHGVGI
Sbjct: 62  SINEDNSITVVDDGRGIPTGMHE--SGMSAVELVLTKLHAGGKFGGGGYKVSGGLHGVGI 119

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+   V V++   I    FSRG   S L +  K     GT + F+PD +IF   
Sbjct: 120 SVVNALSEWTKVQVSQNGIIQEIDFSRGHKTSELHEIGKAEG-TGTTVIFKPDSEIFETT 178

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L    Q  A+L+  ++   S  +        P  E F++ GGL +++    EN
Sbjct: 179 V-FNFDTLKIRLQELAFLNKGLRITLSDLR-----QEEPRIESFHYEGGLSSFITFLNEN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVAL 338
           + +++  +   +  K       V+ A+ + +   E   S+ N I T +GGTH SG R AL
Sbjct: 233 KEVVNPTVIDIENTKDDV---VVDVALQYNDSYSENLLSFVNNINTVDGGTHLSGFRAAL 289

Query: 339 TRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y   +   +    ++  +D+      ++SV + EP+F GQTKTKL + + +   
Sbjct: 290 TRTLNDYGRKSGLIKENESNLSGEDVREGLTAVVSVKVLEPQFEGQTKTKLGNSEVKGIT 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           +  + +    +  ++P +A K++E   +        R+ +    RK A+    LPGKLAD
Sbjct: 350 DVIVSEGLKTFFEEHPQDAKKIIEKATMASRAREAARKARDLTRRKNALEVSSLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS+     TE+++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI  N +I  
Sbjct: 410 CSEKDTSMTEIYLVEGDSAGGSAKQGRDRRYQAILPLRGKILNVEKARLDKILANNEIRS 469

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ A G     ++     RY K+IIMTDADVDGAHI +LLLTFFY+ M  L+E+ H+++ 
Sbjct: 470 MITAFGTGIGDEFDITKSRYNKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIYIA 529

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL++I +G    Y + +      L+E  + G   I I R+KGLGEM   QL ET M+ 
Sbjct: 530 QPPLYQIKKGKSHWYVYSDAELTAKLDEVGRDG---ITIQRYKGLGEMNPEQLWETTMNP 586

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             RT+L+V +   +    +       LMG K + R KFI++ A ++ ++ 
Sbjct: 587 ENRTILQVSLEDSI----EADKIFTVLMGDKVEPRRKFIEDNAKYVRNLD 632


>gi|218246132|ref|YP_002371503.1| DNA gyrase subunit B [Cyanothece sp. PCC 8801]
 gi|257059181|ref|YP_003137069.1| DNA gyrase subunit B [Cyanothece sp. PCC 8802]
 gi|218166610|gb|ACK65347.1| DNA gyrase, B subunit [Cyanothece sp. PCC 8801]
 gi|256589347|gb|ACV00234.1| DNA gyrase, B subunit [Cyanothece sp. PCC 8802]
          Length = 641

 Score =  618 bits (1594), Expect = e-175,   Method: Composition-based stats.
 Identities = 256/652 (39%), Positives = 374/652 (57%), Gaps = 19/652 (2%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
            + +Y A  I++LEGLEPVR RPGMYIG T  + LHHL  EV+DN++DE +AGY   IE+
Sbjct: 2   TTSDYGAQQIQVLEGLEPVRKRPGMYIGTTGPRGLHHLVYEVVDNSIDEALAGYCTHIEI 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            ++ +G +TV D+GRGIP + HP    KS LE ++T LHAGGKF    Y++SGGLHGVGI
Sbjct: 62  DINSDGSVTVTDDGRGIPTDIHP-TTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGI 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+ ++VTV R+  I +Q++ RG P++ L       +  GT I+F PD +IF   
Sbjct: 121 SVVNALSEWVNVTVWREGNIHTQRYERGNPVTSLAANPDPDHSTGTSISFLPDIEIFSGG 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             FD   L    +  AYL+  VK  ++ ++          +E + + GG+K Y+     +
Sbjct: 181 IEFDYNTLSGRLRELAYLNAGVKITFTDNR-----PAEIHQETYCYEGGIKEYVAYMCRD 235

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
           +  +  +I     EK G  +  V         +  +  + N I T +GGTH  GL+  LT
Sbjct: 236 KDALHQDIIYVSGEKNGV-QIEVALQWCIDAYSDNLLGFANNIRTIDGGTHLEGLKTVLT 294

Query: 340 RGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I   A      +    ++  +++     G++SV + EPEF GQTKTKL + + +  V+
Sbjct: 295 RTINNVARKRNKIKENEANLGGENVREGLTGVISVKVPEPEFEGQTKTKLGNTEVRGIVD 354

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
           + + +  + YL  NP  A  ++E  ++  +     R+ RE V RK+ +    LPGKLADC
Sbjct: 355 SLVGEVLNEYLEFNPQVADNIIEKAVQAFKAAEAARRARELVRRKSVLESSPLPGKLADC 414

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E+F+VEGDSAGGSAKQ R+R  QA+LPLRGKILN+      KI  N +I  L
Sbjct: 415 STRDPEESEIFLVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNNEIQSL 474

Query: 517 VQALGCRTR-SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           + ALG   +  ++    LRY +V+IMTDADVDGAHI +LLLTFFY+   +L++Q ++++ 
Sbjct: 475 ITALGLGIKGEEFDPSQLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRELVDQGYVYIA 534

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+++ +G   VY ++E   Q+ L     +      I RFKGLGEM+ +QL ET M+ 
Sbjct: 535 CPPLYKVERGRNHVYCYNERELQEHLNSLPANAN--YTIQRFKGLGEMMPTQLWETTMNP 592

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA--SFIDDVG 685
             RT+ RVEI        +       LMG +   R +FI+       + D+ 
Sbjct: 593 ETRTMKRVEIED----AAEADRIFTVLMGDRVAPRREFIETYGPKLNLTDLD 640


>gi|283797181|ref|ZP_06346334.1| DNA gyrase, B subunit [Clostridium sp. M62/1]
 gi|291075139|gb|EFE12503.1| DNA gyrase, B subunit [Clostridium sp. M62/1]
          Length = 636

 Score =  618 bits (1594), Expect = e-175,   Method: Composition-based stats.
 Identities = 252/644 (39%), Positives = 370/644 (57%), Gaps = 20/644 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y A  I+ILEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AG+ + I+V +
Sbjct: 3   SEYSADQIQILEGLEAVRKRPGMYIGSTSIRGLHHLVYEIVDNSVDEALAGFCSEIDVQI 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +  +TV DNGRGIPV+   K      +E++ T LHAGGKF    Y++SGGLHGVG SV
Sbjct: 63  NADNSITVTDNGRGIPVDIQKKA-GIPAVEVVFTVLHAGGKFGGGGYKVSGGLHGVGASV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKA 220
           VNALS+ L V + +   I++Q++ +G  + PL  K     +K GTR+TF PD +IF +  
Sbjct: 122 VNALSEWLEVDIYKDGHIYNQRYEKGKVMYPLTIKGDCPADKHGTRVTFLPDKEIFEETV 181

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +D   L    +  A+L+  +K     D+E        +++ F++ GG+K ++       
Sbjct: 182 -YDYDTLKVRLRETAFLTKNLKIILRDDRE------EKQEKTFHYEGGIKEFVTYLNRGG 234

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
             + + +   +  +   +   VE A+   +     I ++ N I T EGGTH SG + ALT
Sbjct: 235 ESLYAPVIYCEGVRDNVY---VEVAMQHNDSYTENIYTFVNNINTPEGGTHLSGFKTALT 291

Query: 340 RGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
                YA   +  +        +D+      I+SV + EP+F GQTK KL + +A+  V 
Sbjct: 292 NTFNDYARKNKLLKENEPSLSGEDIREGLTAIISVKLEEPQFEGQTKQKLGNTEARAAVA 351

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADC 456
             + +   ++L QNP  A  + E  I     R   R+      RK+A+  L LPGKLADC
Sbjct: 352 GIVSEQLTYFLEQNPGVAKIISEKSILAQRARAAARRAREMTRRKSALDGLALPGKLADC 411

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S       E+++VEGDSAGGSAK+AR+++NQA+LPLRGKILNV  A  +KI  N +I  +
Sbjct: 412 SDKNPENCEIYLVEGDSAGGSAKEARSKANQAILPLRGKILNVEKARLDKIYANAEIRSM 471

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A G      +    LRY K+IIMTDADVDGAHI++LLLTF Y+ M +LI+Q +++L  
Sbjct: 472 ITAFGTGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFIYRFMPELIKQGYVYLAQ 531

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL++I +  +  YA+ +     IL E  +    K  I R+KGLGEM A QL ET MD  
Sbjct: 532 PPLYKIEKNKRIWYAYSDAELNSILSEIGRDQNNK--IQRYKGLGEMDAEQLWETTMDPE 589

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           +R LLRV +++   +  +   +   LMG + + R +FI+  A +
Sbjct: 590 RRILLRVTMDE--ETTSEVDLTFTTLMGDQVEPRREFIEANAKY 631


>gi|149278877|ref|ZP_01885012.1| DNA topoisomerase (ATP-hydrolyzing), subunit B (DNA gyrase)
           [Pedobacter sp. BAL39]
 gi|149230496|gb|EDM35880.1| DNA topoisomerase (ATP-hydrolyzing), subunit B (DNA gyrase)
           [Pedobacter sp. BAL39]
          Length = 652

 Score =  618 bits (1594), Expect = e-175,   Method: Composition-based stats.
 Identities = 256/662 (38%), Positives = 381/662 (57%), Gaps = 21/662 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
                   NY A +I++LEGLE VR RP MYIG T  K LHHL  EV+DN++DE +AG+A
Sbjct: 2   SEENDPKSNYSADNIQVLEGLEAVRKRPSMYIGDTGIKGLHHLVYEVVDNSIDEALAGHA 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I V++  +  + V DNGRGIP   + K  NKS LEI++T LHAGGKFD  TY++SGGL
Sbjct: 62  DTIYVNILEDNSIRVEDNGRGIPTGINKK-ENKSALEIVMTVLHAGGKFDKDTYKVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+S VNALS  L   V R+  I+ Q+++ G PL  ++   +  +KRGT +TF PDP 
Sbjct: 121 HGVGVSCVNALSTHLKAEVHREGQIWMQEYNIGKPLYDVKLVGET-DKRGTIVTFSPDPT 179

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     +    L    +  ++L+  +K   + ++E  +  G    E F+  GGLK ++Q
Sbjct: 180 IFTQTTEYRYDTLAARLRELSFLNKGIKLTLTDERE-TDADGNFITELFHSEGGLKEFVQ 238

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
                R  + +E    +  K G     VE A+ + +     + SY N I T EGGTH +G
Sbjct: 239 FLDGGRPSLIAEPIYVEGIKNGIP---VELALQYNDSYAENVHSYVNNINTHEGGTHIAG 295

Query: 334 LRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R  LTR +K YA+ +   + +      DD       ++SV ++EP+F GQTKTKL + +
Sbjct: 296 FRRGLTRTLKAYADKSGLLKNVKFEITGDDFREGLTAVVSVKVQEPQFEGQTKTKLGNSE 355

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLP 450
               V+ A+ +  ++YL +NP EA  ++  VI   +     R+ +  V RK+ +    LP
Sbjct: 356 VMGAVDVAVGEALNNYLEENPREAKLIVNKVILAATARAAARKAREMVQRKSVMGGSGLP 415

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS +     E+++VEGDSAGG+AKQ R+R+ QA+LPL+GKILNV  A   KI  N
Sbjct: 416 GKLADCSDSDPEKCEIYLVEGDSAGGTAKQGRDRNFQAILPLKGKILNVEKAMEHKIYEN 475

Query: 511 QQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
            +I ++  ALG    +   ++      LRY KV+IMTDAD+DG+HI +L+LTFF++ M  
Sbjct: 476 DEIKNMFTALGVSIGTPEDDKALNLTKLRYHKVVIMTDADIDGSHITTLILTFFFRYMKA 535

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEML 624
           LIE  ++++ +PPL+++ +G +  Y  +++ +   ++  K  GK   + I R+KGLGEM 
Sbjct: 536 LIEAGYVYIAAPPLYQVKKGKEHEYCWNDQQRDAAVQRLKGAGKEESVHIQRYKGLGEMN 595

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           A QL +T ++   RTLL+  I            + + LMG +   R  FI+  A +   +
Sbjct: 596 AEQLWDTTLNPQTRTLLQATIENAAEC----DHTFSMLMGDEVGPRRDFIERNAKYAK-I 650

Query: 685 GT 686
             
Sbjct: 651 DA 652


>gi|256848502|ref|ZP_05553944.1| DNA gyrase, B subunit [Lactobacillus coleohominis 101-4-CHN]
 gi|256714769|gb|EEU29748.1| DNA gyrase, B subunit [Lactobacillus coleohominis 101-4-CHN]
          Length = 656

 Score =  618 bits (1594), Expect = e-175,   Method: Composition-based stats.
 Identities = 250/669 (37%), Positives = 371/669 (55%), Gaps = 21/669 (3%)

Query: 23  LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82
             K  E+ +  A         YDAS I++L+GLE VR RPGMYIG T  + LHHL  E++
Sbjct: 2   SDKERELQEEKAEKKAELGSKYDASQIQVLKGLEAVRKRPGMYIGSTTAQGLHHLVWEIV 61

Query: 83  DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142
           DN +DE +AG+ + I V ++ +  +TV DNGRGIPV+   K   K  LE + T LHAGGK
Sbjct: 62  DNGIDEALAGFTDEINVVVEPDNSITVTDNGRGIPVDIQ-KETGKPALETVFTVLHAGGK 120

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VR 200
           F N  Y++SGGLHGVG SVVNALS EL V VARQ   +   F  G   +P++  ++    
Sbjct: 121 FGNGGYKVSGGLHGVGASVVNALSTELDVRVARQGKEYYMDFQGGHVKTPMKVIKEGLPE 180

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
            + GT + F+PDP IF +   ++   L    +  A+L+  +K      +   +       
Sbjct: 181 TQHGTIVHFKPDPDIFRETTVYNIKTLTDRIRELAFLNKGLKITIEDKRNDEDNRQE--- 237

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYC 319
             F++ GG++ Y++       LI       + E  G    TVE ++ +         ++ 
Sbjct: 238 --FHYEGGIRHYVEFLNRGHELIFDPPIYVEGEYNGI---TVEVSLQYTSGYRCNLLTFT 292

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREP 377
           N I T EGG+HE+G + ALTR I  Y   +   +  +     DD+      ++S+    P
Sbjct: 293 NNIHTYEGGSHETGFKTALTRVINDYGRKSGQLKGNNSTLSGDDVREGLTAVVSIKHPNP 352

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F GQTKTKL + DA+   ++   +  + +++++P  A K++E  +  S+ R+  ++ RE
Sbjct: 353 QFEGQTKTKLSNSDARTATDHIFSETMNRFMMEHPDTAKKIVEKGMLASKARVAAKRARE 412

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              +K+ +    LPGKLAD +      +ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKI
Sbjct: 413 VTRKKSGLEISNLPGKLADNTSKDPSISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKI 472

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556
           LNV  A   ++  N +I  L  ALG      +      Y K+IIMTDADVDGAHI +LLL
Sbjct: 473 LNVEKASLNRVLANDEIRSLFTALGTGFGEDFDVSKANYHKLIIMTDADVDGAHIRTLLL 532

Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616
           T FY+ M  +IE+ ++++  PPL+++ QG    Y   +E  ++++   +     K  I R
Sbjct: 533 TLFYRFMRPMIEKGYVYIAQPPLYQVRQGKFVKYIETDEELEQVVNSLQPS--PKPVIQR 590

Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           +KGLGEM A QL ET MD   R LLRV+++    +     +    LMGTK   R  FI++
Sbjct: 591 YKGLGEMDAEQLWETTMDPENRHLLRVDLDDAAAAD----EIFPMLMGTKVGPRRDFIEK 646

Query: 677 RASFIDDVG 685
            A+F+ ++ 
Sbjct: 647 NATFVKNLD 655


>gi|312897423|ref|ZP_07756847.1| DNA gyrase, B subunit [Megasphaera micronuciformis F0359]
 gi|310621484|gb|EFQ05020.1| DNA gyrase, B subunit [Megasphaera micronuciformis F0359]
          Length = 647

 Score =  618 bits (1594), Expect = e-175,   Method: Composition-based stats.
 Identities = 260/655 (39%), Positives = 381/655 (58%), Gaps = 26/655 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           ++    +Y A  I++LEGLE VR RPGMYIG T  K LHHL  EV+DN++DE +AGY   
Sbjct: 12  SEQKKVSYGADQIQVLEGLEAVRKRPGMYIGSTSLKGLHHLVYEVVDNSIDEALAGYCTH 71

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV+++ +  +TVVDNGRGIPV  H     K  +E++LT LHAGGKF    Y ISGGLHG
Sbjct: 72  IEVTIEEDNSITVVDNGRGIPVAMHK--IGKPAVEVVLTVLHAGGKFGGDGYPISGGLHG 129

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDPK 214
           VGISVVNALS++  + V R   ++   F+RG+ ++ LEK    +   +RGT++ F+PD +
Sbjct: 130 VGISVVNALSEQTEIEVKRDGFLWKISFARGLTVNSLEKVRPLEEGEERGTKVWFKPDSE 189

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   +D   L    +  A+L+  +    +  +         +KE +Y+ GGL +++Q
Sbjct: 190 IFPDTV-YDFETLKIRLRELAFLNKGLTITLADKR-------TDKKEIYYYEGGLTSFVQ 241

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              ENR+ ++  + + +  K       V+ A+ + +     I ++ N I T+EGGTH SG
Sbjct: 242 FLNENRTPVNQTVISLEGIKSDV---VVDIALQYNDGYSENILTFVNNIFTEEGGTHLSG 298

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R  LTR I  Y   +    +   ++  +D+      I+SV +REP+F GQTKTKL + +
Sbjct: 299 FRSGLTRTINDYGRSSGIIKENEDNLSGEDVREGLTAIISVKVREPQFEGQTKTKLGNSE 358

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLP 450
            +  V+N + D    +  ++P EA  ++   I  +  R   RK      RK A+    LP
Sbjct: 359 VKGIVDNIISDGLKEFFEEHPAEAKSIVTKNINAARARQAARKARELTRRKNALEISSLP 418

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS+     TE+++VEGDSAGGSAKQ R+R  QA+LPLRGKI+NV  A  +KI  N
Sbjct: 419 GKLADCSEKNPDMTEIYLVEGDSAGGSAKQGRDRKFQAILPLRGKIINVEKARLDKILAN 478

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++ A G     ++     RY+K+IIMTDADVDGAHI +LLLTFFY+ M  LI + 
Sbjct: 479 EEIRAMITAFGTGIGEEFDITKRRYDKIIIMTDADVDGAHIRTLLLTFFYRFMKPLITEG 538

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           H+++  PPL+++ +G    Y + ++     L E          + R+KGLGEM   QL E
Sbjct: 539 HVYIAQPPLYQVRKGRSVWYLYTDDELTNKLAEVGNENAV---VQRYKGLGEMNPEQLWE 595

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T MD   RT+L+VE+   +    +     + LMG K + R KFIQ+ A  + ++ 
Sbjct: 596 TTMDPQFRTMLKVELEDAV----EADRIFSVLMGDKVEPRRKFIQDNAKKVRNLD 646


>gi|303229212|ref|ZP_07316011.1| DNA gyrase, B subunit [Veillonella atypica ACS-134-V-Col7a]
 gi|302516122|gb|EFL58065.1| DNA gyrase, B subunit [Veillonella atypica ACS-134-V-Col7a]
          Length = 633

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 253/650 (38%), Positives = 372/650 (57%), Gaps = 23/650 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A +NY A +I++LEGL+ VR RPGMYIG T  + LHHL  EV+DN++DE +AGYA  IEV
Sbjct: 2   AEENYGAQNIQVLEGLDAVRKRPGMYIGSTSIRGLHHLVYEVVDNSVDEALAGYATHIEV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           S++ +  +TVVD+GRGIP   H      S +E++LT LHAGGKF    Y++SGGLHGVGI
Sbjct: 62  SINEDNSITVVDDGRGIPTGMHE--SGMSAVELVLTKLHAGGKFGGGGYKVSGGLHGVGI 119

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+   V V++   I    F+RG   S L +  K     GT + F+PD +IF   
Sbjct: 120 SVVNALSEWTKVQVSQNGIIQEIDFARGHKTSELHEIGKAEG-TGTTVIFKPDSEIFETT 178

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L    Q  A+L+  ++   S  +        P  E F++ GGL +++    EN
Sbjct: 179 V-FNFDTLKIRLQELAFLNKGLRITLSDLR-----QEEPRIESFHYEGGLSSFITFLNEN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVAL 338
           + +++  +   +  K       V+ A+ + +   E   S+ N I T +GGTH SG R AL
Sbjct: 233 KEVVNPTVIDIENTKDDV---VVDVALQYNDSYSENLLSFVNNINTVDGGTHLSGFRAAL 289

Query: 339 TRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y   +   +    ++  +D+      ++SV + EP+F GQTKTKL + + +   
Sbjct: 290 TRTLNDYGRKSGLIKENESNLSGEDVREGLTAVVSVKVLEPQFEGQTKTKLGNSEVKGIT 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           +  + +    +  ++P +A K++E   +        R+ +    RK A+    LPGKLAD
Sbjct: 350 DVIVSEGLKTFFEEHPQDAKKIIEKATMASRAREAARKARDLTRRKNALEVSSLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS+     TE+++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI  N +I  
Sbjct: 410 CSEKDTSMTEIYLVEGDSAGGSAKQGRDRRYQAILPLRGKILNVEKARLDKILANNEIRS 469

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ A G     ++     RY K+IIMTDADVDGAHI +LLLTFFY+ M  L+E+ H+++ 
Sbjct: 470 MITAFGTGIGDEFDITKSRYNKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIYIA 529

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL++I +G    Y + +      L+E  + G   I I R+KGLGEM   QL ET M+ 
Sbjct: 530 QPPLYQIKKGKSHWYVYSDAELTAKLDEVGRDG---ITIQRYKGLGEMNPEQLWETTMNP 586

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             RT+L+V +   +    +       LMG K + R KFI++ A ++ ++ 
Sbjct: 587 ENRTILQVSLEDSI----EADKIFTVLMGDKVEPRRKFIEDNAKYVRNLD 632


>gi|190710561|gb|ACE95111.1| gyrase subunit B [Bacillus thuringiensis serovar novosibirsk]
          Length = 627

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 259/644 (40%), Positives = 375/644 (58%), Gaps = 21/644 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V D+GRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSIVVTDDGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R   I  QK+ RG+P + L+   +  ++ GT   F+PD +IF +  
Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGVPAADLKVIGET-DRTGTITRFKPDSEIFTETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E       K G     VE A+ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVDGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLL FFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFAIEKARYHKVIIMTDADVDGAHIRTLLLMFFYRYMRQIIECGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF++ QG K  YA++ +  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKVQQGKKIQYAYNNKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            R+LL+V +   +    +  ++   LMG K + R  FIQE A +
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKY 627


>gi|314934956|ref|ZP_07842315.1| DNA gyrase, B subunit [Staphylococcus caprae C87]
 gi|313652886|gb|EFS16649.1| DNA gyrase, B subunit [Staphylococcus caprae C87]
          Length = 644

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 252/657 (38%), Positives = 383/657 (58%), Gaps = 21/657 (3%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
              ++ + +DNY A  I++LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AG
Sbjct: 4   NTLSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 63

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           YAN IEV ++ + ++ V DNGRGIPV+   K   +  +E+ILT LHAGGKF    Y++SG
Sbjct: 64  YANQIEVVIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 122

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG SVVNALS +L V V R +TI+ Q + +G+P   L++  +  ++ GT I F+ D
Sbjct: 123 GLHGVGSSVVNALSQDLEVYVYRNDTIYHQAYKKGVPQFDLKEIGET-DQTGTAIRFKAD 181

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            +IF +   ++   L +  +  A+L+  ++          E+     ++ +++ GG+K+Y
Sbjct: 182 GEIFTETTVYNYETLQQRIRELAFLNKGIQITLR-----DEREEEGREDSYHYEGGIKSY 236

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++   EN+  +  E       K       VE A+ +       + +Y N I T EGGTHE
Sbjct: 237 VELLNENKEPLHEEPIYIHQTKDDI---EVEIALQYNSGYATNLLTYANNIHTYEGGTHE 293

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G + ALTR +  Y   ++   +    +  +D       I+S+   +P+F GQTKTKL +
Sbjct: 294 DGFKRALTRILNSYGIQSKIIKEDKDKLSGEDTREGLTAIISIKHGDPQFEGQTKTKLGN 353

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448
            + ++ V+    + F+ +L ++P     ++E  I  S  R+  +K RE   RK+A+    
Sbjct: 354 SEVRQVVDKLFAEYFERFLFEHPAVGRIIVEKGIMASRARVAAKKAREVTRRKSALDVSS 413

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS      +E+F+VEGDSAGGS K  R+   QA+LPLRGKILNV  A  ++I 
Sbjct: 414 LPGKLADCSSKNPEESEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRIL 473

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           NN +I  ++ A G     ++     RY K++IMTDADVDGAHI +LLLTFFY+ M  LIE
Sbjct: 474 NNNEIRQMITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 533

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             ++++  PPL+++TQG +  Y  ++    K+  E   +   K  ISR+KGLGEM A QL
Sbjct: 534 AGYVYIAQPPLYKLTQGKQKYYVFNDRELDKLKAEL--NPTPKWSISRYKGLGEMNADQL 591

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            ET M+   R++L+V +   +    D   +   LMG   + R +FI++ A +  ++ 
Sbjct: 592 WETTMNPEHRSMLQVRLEDAI----DADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 643


>gi|258646055|ref|ZP_05733524.1| DNA gyrase, B subunit [Dialister invisus DSM 15470]
 gi|260403425|gb|EEW96972.1| DNA gyrase, B subunit [Dialister invisus DSM 15470]
          Length = 649

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 255/654 (38%), Positives = 374/654 (57%), Gaps = 22/654 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
           A ++   +Y A  IR+LEGLE VR+RPGMYIG T  + LHHL  EV+DN++DE +AG+  
Sbjct: 13  AGENGKSDYGAKDIRVLEGLEAVRLRPGMYIGSTSARGLHHLVYEVVDNSIDEALAGFCT 72

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            IEV+L+ +G  T+ DNGRGIP   H     K  +E++LT LHAGGKF    Y ISGGLH
Sbjct: 73  HIEVTLNDDGSCTITDNGRGIPTGLHE--TGKPAMEVVLTVLHAGGKFGGDGYPISGGLH 130

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVGISVV ALS+   VTV R+      K +RG+    ++   +      T++TF+PD +I
Sbjct: 131 GVGISVVTALSEWTTVTVKREGHFHEMKLARGVVTQHMKTFGETTETG-TQVTFKPDGEI 189

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   FD   L    +  A+L+  +    +  ++ A       ++ F + GG+  +++ 
Sbjct: 190 FKEGTDFDYDTLKVRMRELAFLNKGLTITLTDVRDGA-----THQDVFCYAGGIVEFIKF 244

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             E + L+   + + + EK    R  V+ A+ +       + ++ N I T EGG H +G 
Sbjct: 245 LNEGKDLVDPGVISFEGEKD---RVIVDIAMQYQAGYSESMYTFVNNINTVEGGMHLTGF 301

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR I  YA           ++  DD+      ++SV +  P+F GQTKTKL + D 
Sbjct: 302 RNALTRTINDYARSNNLLKPNEENLSGDDVREGLTCVISVKVPNPQFEGQTKTKLGNQDV 361

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
           +  V+  + D    YL ++P EA +++   I  +  R   R+ RE   RK A+    LPG
Sbjct: 362 KGIVDTIVSDGLRTYLEEHPAEAKEIISKSITANRAREAARRARELTRRKNALEVSSLPG 421

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS+     TE++IVEGDSAGGSAK  R+R  QA+LPLRGKILNV  A  +K+ N+ 
Sbjct: 422 KLADCSEKDPKFTEIYIVEGDSAGGSAKSGRDRRYQAILPLRGKILNVEKARLDKVLNSD 481

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
            I  ++ A G      +  + LRY K+IIMTDADVDGAHI +LLLTFFY+ M  LI + H
Sbjct: 482 AIRTMITAFGTGVAEDFDIKKLRYYKIIIMTDADVDGAHIRTLLLTFFYRYMKPLITEGH 541

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPL+++ +G +  Y +D+  + K+L E  + G     I R+KGLGEM   QL +T
Sbjct: 542 VYIAQPPLYQVRKGRQKYYTYDDVEQDKLLNEIGRDGCA---IQRYKGLGEMNPEQLWDT 598

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            M+  +R +L+VE+   +    +       LMG K + R KFI++ A  + ++ 
Sbjct: 599 TMNPEQRVMLKVELTDAV----EADRLFTILMGDKVEPRRKFIEDNAKNVSNLD 648


>gi|253573849|ref|ZP_04851191.1| DNA gyrase, B subunit [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251846326|gb|EES74332.1| DNA gyrase, B subunit [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 636

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 267/649 (41%), Positives = 383/649 (59%), Gaps = 22/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
              YD S+I++LEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AGYAN I+V+
Sbjct: 5   EQTYDESNIQVLEGLEAVRKRPGMYIGSTSVRGLHHLVWEVVDNSIDEALAGYANKIDVT 64

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  +TV DNGRGIPV  + K    STLE+++T LHAGGKF    Y++SGGLHGVG+S
Sbjct: 65  VHPDNSVTVEDNGRGIPVGMNEKLQK-STLEVVMTVLHAGGKFGGGGYKVSGGLHGVGVS 123

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS ++ V V R   I+ Q++ RG P   +           T+ TF PDP+IF +  
Sbjct: 124 VVNALSTKVIVEVKRDGHIYQQEYHRGTPQYDVRVIGDTTETG-TKTTFYPDPEIFTETT 182

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   LL   +  A+L+  +    + ++         + E F++ GG+  Y++   +NR
Sbjct: 183 VFDYNTLLTRIRELAFLNKGINISLTDER-------TGQSESFHYEGGIMEYVRFLNQNR 235

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
            ++  E    + ++       VE ++ + +     I S+ N I T EGGTHESG + ALT
Sbjct: 236 EVLHEEPIYVEGQRDMIQ---VEISLQYNDGYTENIYSFANNIHTHEGGTHESGFKSALT 292

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA  T    +   ++  DD+      I+SV I EP+F GQTKTKL + + +  VE
Sbjct: 293 RIINDYARKTGMIKENDSNLTGDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGIVE 352

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
           +   +    ++ +NP  + ++LE  ++ S  R   RK RE   RK+A+    LPGKLADC
Sbjct: 353 SLFAEKLQEFMDENPSVSRRILEKSLQASRAREAARKARELTRRKSALEVSALPGKLADC 412

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S   A  +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  ++I  N +I  +
Sbjct: 413 SSKDASISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDRILGNAEIRAI 472

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + ALG      +     RY K+IIMTDADVDGAHI +LLLTFF++ M  +IE  ++++  
Sbjct: 473 ITALGTGIGEDFDISKARYHKIIIMTDADVDGAHIRTLLLTFFFRYMRKIIEAGYVYIAQ 532

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF+I +     YA+ E+ + +I+ EF +    K+ + R+KGLGEM A QL ET MD  
Sbjct: 533 PPLFKIERNKVVRYANSEKERDQIIAEFGE--GAKVNVQRYKGLGEMNAEQLWETTMDPE 590

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            R + +V I+  +          + LMG   + R +FI E A ++ ++ 
Sbjct: 591 SRVMQQVSISDAI----QADAIFDTLMGDNVEPRREFIHEHAKYVKNLD 635


>gi|330837805|ref|YP_004412446.1| DNA gyrase subunit B [Spirochaeta coccoides DSM 17374]
 gi|329749708|gb|AEC03064.1| DNA gyrase subunit B [Spirochaeta coccoides DSM 17374]
          Length = 660

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 252/679 (37%), Positives = 382/679 (56%), Gaps = 25/679 (3%)

Query: 12  LPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE 71
           +    Q  + K       P     A+   S  Y A+SI++L+GLE VR RPGMYIG T  
Sbjct: 1   MDDTQQREAGKKPALHHAP----MADAEGSRKYTANSIQVLKGLEAVRKRPGMYIGSTGI 56

Query: 72  KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLE 131
           + LHHL  E++DN++DE +AGY + I ++++    +TV DNGRGIPV+ HP   NKSTLE
Sbjct: 57  EGLHHLVYEIVDNSIDEAMAGYCDYIRITIEPGQIITVEDNGRGIPVDIHP-VENKSTLE 115

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           ++LT LHAGGKFD  +Y++SGGLHGVG SVVNALS+ + VTV R   ++ Q + +GIP +
Sbjct: 116 VVLTMLHAGGKFDKGSYKVSGGLHGVGSSVVNALSEWMEVTVHRAPNVYRQVYHKGIPDA 175

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
           P+E   +  ++ GT + F+ D  I      +    L +  +  A+L+  +      ++  
Sbjct: 176 PVEVIGQT-DRTGTIVRFKADTTIMDTD-EYSYTTLAERFRELAFLNKGITISVGDERTE 233

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
            +K        F F GG+K++++   +N   I  E    + EK       ++ A+ + + 
Sbjct: 234 EKKERN-----FCFEGGIKSFVEYLNKNNKTIHPEPIFFEREKDD---LKIDIALQYNDR 285

Query: 312 NPEITS-YCNTILTDEGGTHESGLRVALTRGIKKYAELTQN---KRAISIISDDLMISAV 367
             EI   + N I T EGGTH SG R  +TR + +  +       K    + +DDL     
Sbjct: 286 YDEILYTFVNNINTREGGTHLSGFRSGMTRAVNEQLKKNAKLTKKFTDPLTTDDLREGLT 345

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            I+S+ I +P+F GQTK KL +   Q  V + + +   +Y  + P     +LE  +  ++
Sbjct: 346 AIVSIKIPDPQFEGQTKMKLGNQRVQGIVTSVVYENLTNYFDEFPAVTEMILEKCVSAAK 405

Query: 428 ERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
                 +      + +   L LPGKLA C++     +E+FIVEGDSAGGSAKQ R+R  Q
Sbjct: 406 A-RMAARDARARVRKSAEGLGLPGKLAPCAEKDPAKSEIFIVEGDSAGGSAKQGRDRQCQ 464

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVD 547
           A+LPL GK+LNV  A  EK+ +N ++  ++ +LG    S +  E +RY KVIIM DADVD
Sbjct: 465 AILPLWGKMLNVEKAREEKVMDNDKLTPVIASLGAGLGSHFDAEKVRYHKVIIMADADVD 524

Query: 548 GAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607
           G+HI +LLLTFF++ M  LIE+ +++   PPL++IT G    YA+DE+ + +IL E    
Sbjct: 525 GSHIRTLLLTFFFRYMRPLIEKGYVYFAMPPLYKITVGKSVSYAYDEDARVRILTENNVG 584

Query: 608 GKG-KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK 666
             G K  I R+KGLGEM   QL ET M+ + R + +V +   +    +     + LMG +
Sbjct: 585 PDGNKAAIQRYKGLGEMNPDQLWETTMNPDTRMITQVCLEDAI----EADQVFSMLMGEE 640

Query: 667 ADERFKFIQERASFIDDVG 685
            + R  FI+E A+++ ++ 
Sbjct: 641 VEPRRVFIEENATYVSNLD 659


>gi|223043343|ref|ZP_03613389.1| DNA gyrase, B subunit [Staphylococcus capitis SK14]
 gi|222443132|gb|EEE49231.1| DNA gyrase, B subunit [Staphylococcus capitis SK14]
          Length = 639

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 251/655 (38%), Positives = 383/655 (58%), Gaps = 21/655 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            ++ + +DNY A  I++LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AGYA
Sbjct: 1   MSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYA 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           N IEV ++ + ++ V DNGRGIPV+   K   +  +E+ILT LHAGGKF    Y++SGGL
Sbjct: 61  NQIEVVIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS +L V V R +TI+ Q + +G+P   L++  +  ++ GT I F+ D +
Sbjct: 120 HGVGSSVVNALSQDLEVYVYRNDTIYHQAYKKGVPQFDLKEIGET-DQTGTAIRFKADGE 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   ++   L +  +  A+L+  ++          E+     ++ +++ GG+K+Y++
Sbjct: 179 IFTETTVYNYETLQQRIRELAFLNKGIQITLR-----DEREEEGREDSYHYEGGIKSYVE 233

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              EN+  +  E       K       VE A+ +       + +Y N I T EGGTHE G
Sbjct: 234 LLNENKEPLHEEPIYIHQTKDDI---EVEIALQYNSGYATNLLTYANNIHTYEGGTHEDG 290

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            + ALTR +  Y   ++   +    +  +D       I+S+   +P+F GQTKTKL + +
Sbjct: 291 FKRALTRILNSYGIQSKIIKEDKDKLSGEDTREGLTAIISIKHGDPQFEGQTKTKLGNSE 350

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            ++ V+    + F+ +L ++P     ++E  +  S  R+  +K RE   RK+A+    LP
Sbjct: 351 VRQVVDKLFAEYFERFLFEHPAVGRIIVEKGVMASRARVAAKKAREVTRRKSALDVSSLP 410

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS      +E+F+VEGDSAGGS K  R+   QA+LPLRGKILNV  A  ++I NN
Sbjct: 411 GKLADCSSKNPEESEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNN 470

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
            +I  ++ A G     ++     RY K++IMTDADVDGAHI +LLLTFFY+ M  LIE  
Sbjct: 471 NEIRQMITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAG 530

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPL+++TQG +  Y  ++    K+  E   +   K  ISR+KGLGEM A QL E
Sbjct: 531 YVYIAQPPLYKLTQGKQKYYVFNDRELDKLKAEL--NPTPKWSISRYKGLGEMNADQLWE 588

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T M+   R++L+V +   +    D   +   LMG   + R +FI++ A +  ++ 
Sbjct: 589 TTMNPEHRSMLQVRLEDAI----DADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 638


>gi|164686442|ref|ZP_02210470.1| hypothetical protein CLOBAR_00007 [Clostridium bartlettii DSM
           16795]
 gi|164604453|gb|EDQ97918.1| hypothetical protein CLOBAR_00007 [Clostridium bartlettii DSM
           16795]
          Length = 633

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 250/648 (38%), Positives = 375/648 (57%), Gaps = 22/648 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y A+ I++LEGLE VR+RPGMYIG T  + LHHL  E++DN++DE + GY + I V +
Sbjct: 3   QEYGANQIQVLEGLEAVRLRPGMYIGSTGPRGLHHLVYEIVDNSIDEALQGYCDRIYVCI 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G +T  D+GRGIPVE HPK   KSTLE +LT LHAGGKF    Y++SGGLHGVGISV
Sbjct: 63  NEDGSVTTKDDGRGIPVETHPK-TGKSTLETVLTILHAGGKFGGGGYKVSGGLHGVGISV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VN LS+ L   V R   I+ Q + +GI  S LE   +  +  GT I F PD  IF D   
Sbjct: 122 VNGLSEWLVAEVYRNGKIYRQSYKKGITDSELEIVGE-SDHTGTIIQFMPDATIFDDIV- 179

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L    +  A+L+  V+  +   +   E+        F + GG++ +++     ++
Sbjct: 180 FDYKTLETRLRELAFLNKGVRIVFEDKRPGQEQKKE-----FLYDGGIREFVEYLNSTKT 234

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I   +       K      VE AI + +     I S+ N I T EGG H +G + ALT+
Sbjct: 235 PIHENVVYI---DKKIQDCMVEIAIQYTDGYSENILSFANNIDTHEGGAHLAGFKAALTK 291

Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            + +YA+  +  +    ++  +D+      ++SV + +P+F GQTKTKL +   +  V+ 
Sbjct: 292 TVNEYAKRNKLLKENDANLSGEDIREGLTAVVSVKLPDPQFEGQTKTKLGNTRMRGIVDA 351

Query: 399 ALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
              +    +L +NP  +  +++  +  +      +R +    RKT +    LPGKLADC+
Sbjct: 352 VTVEELGAFLEENPQTSRIIVDKALRAQRAREAAKRARELTRRKTVLESTSLPGKLADCA 411

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           +     +E+F+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  +  ++I ++ +I +++
Sbjct: 412 EKDPAKSEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKSRLDRILSSDEIKNMI 471

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A GC   + +  E  RY K++IMTDADVDGAHI +LLLTFF++ M  LI+  ++++  P
Sbjct: 472 TAYGCGVGNDFDLEKARYHKIVIMTDADVDGAHIRTLLLTFFFRYMRPLIDNGYVYIAQP 531

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+++ +  K  Y + ++  + +LEE    GK  IE+ R+KGLGEM   QL ET M+   
Sbjct: 532 PLYKVKKQKKEYYVYSDKQLEALLEEI---GKSGIELQRYKGLGEMNPEQLWETTMNPET 588

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           RTLL+V I+       +     + LMG K   R +FI+E A F+ ++ 
Sbjct: 589 RTLLQVTIDDAT----EADRIFSMLMGDKVGPRKEFIEENAEFVKNLD 632


>gi|332170655|gb|AEE19910.1| DNA gyrase, B subunit [Krokinobacter diaphorus 4H-3-7-5]
          Length = 647

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 253/660 (38%), Positives = 383/660 (58%), Gaps = 23/660 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            ++ +    Y A SI+ LEG+E VRMRP MYIG    + LHHL  EV+DN++DE + GY 
Sbjct: 1   MSDDAKKKEYSADSIQALEGMEHVRMRPSMYIGDVGVRGLHHLVYEVVDNSIDEAMGGYC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I+V+++ N  +T  DNGRGIPV  H K    S L++++T + AGGKFD  +Y++SGGL
Sbjct: 61  DAIDVTINENNSITTRDNGRGIPVGLHKK-EGVSALQVVMTKIGAGGKFDKDSYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+S VNALS+ L  TV ++  I+ Q++ RG  + P++      +  GT +TF PD  
Sbjct: 120 HGVGVSCVNALSNHLRATVYKEGKIWEQEYERGKAMYPVKVIGDT-DFTGTEVTFLPDDS 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     +    L    +  AYL+  +    +  +   EK    E E F+   GL  +++
Sbjct: 179 IFQQTTEYSYDTLASRLRELAYLNKGITITLTDKRVKNEKG-EHETETFHSKEGLSEFVR 237

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               NR+ I  E+ + + EK G     VE A+ + +     + SY N I T EGGTH +G
Sbjct: 238 FLDGNRTPIIGEVISMEGEKNGIP---VEVAMIYNDSYAENLHSYVNNINTHEGGTHLAG 294

Query: 334 LRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R  LT  +KK+A+ +    K    I  DD       I+SV + EP+F GQTKTKL + +
Sbjct: 295 FRRGLTGSLKKFADASGMLDKLKFDIAGDDFREGLTAIISVKVSEPQFEGQTKTKLGNRE 354

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLP 450
               V  A+ +  + Y+ +NP +A  +++ VI  ++ R   +K RE+  RKT +    LP
Sbjct: 355 VTSAVSQAVAEMIEIYMEENPNDAKIIVQKVILAAQARHAAKKAREMVQRKTVMSIGGLP 414

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL+DCS+      E+F+VEGDSAGG+AKQ R+R  QA+LPLRGKILNV  A S K+  N
Sbjct: 415 GKLSDCSETDPTLCEVFLVEGDSAGGTAKQGRDREFQAILPLRGKILNVEKAMSHKVFEN 474

Query: 511 QQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           ++I ++  ALG    ++   +      LRY KV+IM DADVDG+HI++L+LTFF++ M +
Sbjct: 475 EEIKNIFTALGVTIGTEEDSKALNLSKLRYHKVVIMCDADVDGSHISTLILTFFFRYMKE 534

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           L+E  ++++ +PPL+ + +G K  YA +++ +  I +     G   + I R+KGLGEM A
Sbjct: 535 LVENGYVYIATPPLYLVKKGQKKQYAWNDKERDAIADSM---GTQGVSIQRYKGLGEMNA 591

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL +T M+   RTL +V I+       +     + LMG +   R +FI++ A +  ++ 
Sbjct: 592 EQLWDTTMNPEFRTLRQVAIDNGT----EADRIFSMLMGDEVPPRREFIEKNAIYA-NID 646


>gi|313904729|ref|ZP_07838103.1| DNA gyrase, B subunit [Eubacterium cellulosolvens 6]
 gi|313470522|gb|EFR65850.1| DNA gyrase, B subunit [Eubacterium cellulosolvens 6]
          Length = 645

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 261/656 (39%), Positives = 376/656 (57%), Gaps = 19/656 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
             +   ++ Y A  I+ILEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AGY 
Sbjct: 3   TESTVVTNEYGADQIQILEGLEAVRKRPGMYIGTTSIRGLHHLVYEIVDNSVDEALAGYC 62

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + IEV+++ +  +TVVD+GRGIPV  + K      +E++ T LHAGGKF    Y++SGGL
Sbjct: 63  SHIEVTINQDNSITVVDDGRGIPVGINKKA-GIPAVEVVFTVLHAGGKFGGGGYKVSGGL 121

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213
           HGVG SVVNALSD L V +     I+ Q++ RG  +  L+   +    K GTR+ F+PD 
Sbjct: 122 HGVGASVVNALSDWLEVQIYHDGKIYKQRYERGKTMYKLKVVGECDPEKTGTRVDFKPDG 181

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF +   +D   L    +  A+L+  +K      +E  E     +++ F++ GG+K ++
Sbjct: 182 TIFEETV-YDFKTLKTRLRETAFLTKGLKITLRDAREGQE-----QEKVFHYEGGIKEFV 235

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           Q   ++   +  +I   +  +       VE ++   +     +  + N ILT EGG H  
Sbjct: 236 QYLNKSNEGLYQDILYFEGVQNDV---VVEVSMQHNDSYNETVYGFVNNILTPEGGMHVM 292

Query: 333 GLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR    Y    +  +    ++  +D+      I+SV I +P+F GQTK KL + 
Sbjct: 293 GFRQALTRTFNDYGRKMKLLKDNDENLSGEDIREGLTAIISVKIGDPQFEGQTKQKLGNS 352

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           +A+  V+  +      YL Q+P     ++E  +     R   RK R+   RKTA+  L L
Sbjct: 353 EARSAVDAVVSKQLGIYLEQHPDVGKTIIEKSLVSQRAREAARKARDLTRRKTALDGLAL 412

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADCS       E+FIVEGDSAGGSAK ARNR  QA+LPLRGKILNV  A  ++I  
Sbjct: 413 PGKLADCSDKDPKHCEIFIVEGDSAGGSAKVARNRRTQAILPLRGKILNVEKARLDRIYG 472

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N +I  ++ A G      +    LRY+K+IIMTDADVDGAHIA+L+LTF Y+ M +LI+ 
Sbjct: 473 NAEIRSMITAFGTGIHDDFDLSKLRYDKIIIMTDADVDGAHIATLMLTFLYRFMPELIKS 532

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
            H++L  PPL+++ +  K  YA+ +E   KI+ E  + G  +  I R+KGLGEM A QL 
Sbjct: 533 GHVYLAKPPLYKVERNKKVWYAYSDEELNKIMNEIGRDGGNR--IQRYKGLGEMDADQLW 590

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           ET MD   R LLRV ++ D     +   +   LMG K + R +FI+ERA  + ++ 
Sbjct: 591 ETTMDPENRVLLRVNMDDD--DASEIDLTFTTLMGDKVEPRREFIEERAKDVQNLD 644


>gi|56751624|ref|YP_172325.1| DNA gyrase subunit B [Synechococcus elongatus PCC 6301]
 gi|81301300|ref|YP_401508.1| DNA gyrase subunit B [Synechococcus elongatus PCC 7942]
 gi|25019687|gb|AAN71773.1| DNA gyrase subunit B [Synechococcus elongatus PCC 7942]
 gi|56686583|dbj|BAD79805.1| DNA gyrase B subunit [Synechococcus elongatus PCC 6301]
 gi|81170181|gb|ABB58521.1| DNA gyrase subunit B [Synechococcus elongatus PCC 7942]
          Length = 645

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 263/642 (40%), Positives = 372/642 (57%), Gaps = 12/642 (1%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y AS I++LEGLEPVR RPGMYIG T  K LHHL  EV+DNA+DE +AGY N I+V 
Sbjct: 2   ANEYGASQIQVLEGLEPVRKRPGMYIGSTGPKGLHHLVYEVVDNAVDEALAGYCNTIDVR 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +G   V DNGRGIP + HP+   KS LE +LT LHAGGKF    Y++SGGLHGVG+S
Sbjct: 62  LLEDGSCQVTDNGRGIPTDIHPQ-TGKSALETVLTILHAGGKFGGGGYKVSGGLHGVGVS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ + VTV R+     Q+F +G P+  L+      ++RGT++ F+PD  IF +  
Sbjct: 121 VVNALSEYVEVTVWREGKTHQQRFEQGNPIGELQVAPDADDRRGTQVRFKPDATIFSETT 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   L    +  AYL+  V+  ++ ++    K   P +E +YF GG++ Y+     ++
Sbjct: 181 EFDYGTLASRLKELAYLNAGVRIDFTDERLQLTKNHEPHQETYYFEGGIREYVAYMNTDK 240

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
             + SEI   ++EK G  +            +  I  + N I T +GGTH  GL+  LTR
Sbjct: 241 QALHSEIIFVQSEKDGV-QVEAALQWCVDAYSDNILGFANNIRTIDGGTHIEGLKTVLTR 299

Query: 341 GIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +   A     ++    ++  +++      I+SV + +PEF GQTKTKL + + +  V+ 
Sbjct: 300 TMNTIARKRNKRKDADNNLSGENIREGLTAIVSVKVPDPEFEGQTKTKLGNTEVRGIVDT 359

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            + +    YL  +P  A  +LE  I+        R+ RE V RK+ +    LPGKLADCS
Sbjct: 360 LVGETLTEYLEFHPSVADLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCS 419

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +E+FIVEGDSAGGSAKQ R+R  QA+LPLRGKILN+      KI  N +I  L+
Sbjct: 420 SRDPGESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALI 479

Query: 518 QALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
            ALG   + +  +   LRY +++IMTDADVDGAHI +LLLTFFY+    L+EQ ++++  
Sbjct: 480 TALGLGIKGEEFDASQLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQRSLLEQGYIYIAC 539

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+++ +G    Y ++E   Q+ +  F ++      I RFKGLGEM+  QL ET MD  
Sbjct: 540 PPLYKLERGRNHYYCYNERELQERIATFPENAN--YTIQRFKGLGEMMPQQLWETTMDPE 597

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
            RT+ RVEI        +       LMG +   R +FI+   
Sbjct: 598 TRTMKRVEIED----AAEADRIFTILMGDRVQPRREFIETYG 635


>gi|209885135|ref|YP_002288993.1| DNA topoisomerase IV, B subunit [Oligotropha carboxidovorans OM5]
 gi|209873331|gb|ACI93127.1| DNA topoisomerase IV, B subunit [Oligotropha carboxidovorans OM5]
          Length = 689

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 382/675 (56%), Positives = 492/675 (72%), Gaps = 7/675 (1%)

Query: 10  STLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT 69
           S+             ++     +P     SA   Y A+ I +LEGLEPVR RPGMYIGGT
Sbjct: 12  SSSAKPDSDLFGSGGRAPRGSAAPPARTTSAEGGYTAADIEVLEGLEPVRRRPGMYIGGT 71

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
           DEKALHHLF+EVIDN+MDE +AG+A+ IEVSL  +G+LTVVDNGRGIPV+ HPKF NKS 
Sbjct: 72  DEKALHHLFAEVIDNSMDEALAGHASFIEVSLGADGYLTVVDNGRGIPVDPHPKFKNKSA 131

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
           LEII+ TLHAGGKFD+  YE SGGLHGVG+SVVNALS EL V VAR   ++   F RG P
Sbjct: 132 LEIIMCTLHAGGKFDSKVYETSGGLHGVGVSVVNALSSELIVEVARNQKLYRMTFERGKP 191

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
              LE+  KV N+RGT + F+PD +IFG+KA F   RL +M +SKAYL G V+  W C  
Sbjct: 192 KGKLEELGKVHNRRGTSVRFKPDTEIFGNKAVFKPQRLFQMARSKAYLFGGVEIRWRCAP 251

Query: 250 EIAEK-YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           E+ +    +P ++ F+FPGGLK YL   +   +L+  +IF GKT + G H G  EWA+AW
Sbjct: 252 ELLKGLDSVPAEDTFHFPGGLKDYLAAAVHADTLVHPDIFAGKTGRNGAH-GACEWAVAW 310

Query: 309 C-EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISA 366
             + +  ++SY NT+ T +GGTHE+G+R AL RGI+ +AE T   K+A SI S+D+M+ A
Sbjct: 311 TADADGFMSSYTNTVPTPDGGTHETGMRSALLRGIRDHAERTGQGKKASSITSEDVMVGA 370

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             +LSVF+REPEF GQTK +L + +AQR VE A++DPFDH+L  NP +A KLLE++IER+
Sbjct: 371 AVMLSVFVREPEFQGQTKDRLATAEAQRIVEQAVKDPFDHWLSGNPTQANKLLEFIIERA 430

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
           +ERLRRR ++E++RKTA++KLRLPGKLADC+   A G+ELFIVEGDSAGGSAKQAR+R  
Sbjct: 431 DERLRRRAEKEISRKTAVKKLRLPGKLADCTNTAAEGSELFIVEGDSAGGSAKQARDRKT 490

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADV 546
           QA+LPLRGKILNVASA  +K+  N Q+ DL+QA+G  T + YREEDLRY ++IIMTDADV
Sbjct: 491 QAILPLRGKILNVASATRDKMAANAQLSDLIQAIGAGTGANYREEDLRYSRIIIMTDADV 550

Query: 547 DGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKK 606
           DGAHIASLL+TFFY++M  LI+  HL+L  PPL+R+T G+K++YA DE H+ ++L++ + 
Sbjct: 551 DGAHIASLLITFFYRQMPKLIDNGHLYLAVPPLYRLTHGSKTLYARDEAHRDELLKK-EF 609

Query: 607 HGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK 666
           H   K+EI RFKGLGEM+ +QLKET M   KRTLLRV +         T  S+ +LMG+K
Sbjct: 610 HANAKVEIGRFKGLGEMMPNQLKETTMAPAKRTLLRVVL--ATEERDSTAKSVERLMGSK 667

Query: 667 ADERFKFIQERASFI 681
           A+ RF+FI ERA F 
Sbjct: 668 AEARFEFITERAEFA 682


>gi|282848760|ref|ZP_06258155.1| DNA gyrase, B subunit [Veillonella parvula ATCC 17745]
 gi|282581546|gb|EFB86934.1| DNA gyrase, B subunit [Veillonella parvula ATCC 17745]
          Length = 633

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 252/650 (38%), Positives = 367/650 (56%), Gaps = 23/650 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
              NY A +I++LEGL+ VR RPGMYIG T  + LHHL  EV+DN++DE +AGYA  IEV
Sbjct: 2   PEQNYGAQNIQVLEGLDAVRKRPGMYIGSTSARGLHHLVYEVVDNSVDEALAGYATHIEV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           S++ +  +TVVD+GRGIP   H      S +E++LT LHAGGKF    Y++SGGLHGVGI
Sbjct: 62  SINPDNSVTVVDDGRGIPTGMHE--SGMSAVELVLTKLHAGGKFGGGGYKVSGGLHGVGI 119

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+   V V++   +    F+RG   S L +  K     GT + F+PD +IF   
Sbjct: 120 SVVNALSEWTKVQVSQNGIVQEISFARGHKTSELHEIGKAEG-TGTTVIFKPDAEIFETT 178

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L    Q  A+L+  ++   S  +        P  E F++ GGL +++    EN
Sbjct: 179 V-FSFDTLKMRLQELAFLNKGLRITLSDLR-----LEEPRVESFHYEGGLVSFITFLNEN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVAL 338
           +  I+  +   +  K       V+ A+ + +   E   S+ N I T +GGTH SG R AL
Sbjct: 233 KEAINPTVINIENTKDDV---VVDVALQYNDSYSENLLSFVNNINTIDGGTHLSGFRAAL 289

Query: 339 TRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y   +   +    ++  +D+      ++SV + EP+F GQTKTKL + + +   
Sbjct: 290 TRTLNDYGRKSGLIKENESNLSGEDVREGLTAVVSVKVLEPQFEGQTKTKLGNSEVKGIT 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           +  + +    +  ++P +A K++E   +        R+ +    RK A+    LPGKLAD
Sbjct: 350 DVIVTEGLKTFFEEHPQDAKKIIEKATMASRAREAARKARDLTRRKNALEVSSLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS+     TE+++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI  N +I  
Sbjct: 410 CSEKDTSMTEIYLVEGDSAGGSAKQGRDRRYQAILPLRGKILNVEKARLDKILANNEIRS 469

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ A G     ++     RY K+IIMTDADVDGAHI +LLLTFFY+ M  LIE  H+++ 
Sbjct: 470 MITAFGTGIGDEFDITKSRYNKIIIMTDADVDGAHIRTLLLTFFYRYMRQLIEDGHVYIA 529

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL++I +G    Y + +      L+E  + G     I R+KGLGEM   QL ET M+ 
Sbjct: 530 QPPLYQIKKGKSHWYVYSDAELTAKLDEVGRDGT---TIQRYKGLGEMNPEQLWETTMNP 586

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             RT+L+V ++  +    +       LMG K + R KFI++ A ++ ++ 
Sbjct: 587 ENRTILQVSLDGAI----EADKIFTVLMGDKVEPRRKFIEDNAKYVRNLD 632


>gi|319900374|ref|YP_004160102.1| DNA gyrase subunit B [Bacteroides helcogenes P 36-108]
 gi|319415405|gb|ADV42516.1| DNA gyrase subunit B [Bacteroides helcogenes P 36-108]
          Length = 657

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 254/664 (38%), Positives = 379/664 (57%), Gaps = 24/664 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
              +  +NY AS+I++LEGLE VR RP MYIG   E  LHHL  EV+DN++DE +AGY +
Sbjct: 5   EKINGENNYSASNIQVLEGLEAVRKRPAMYIGDISENGLHHLVYEVVDNSIDEAMAGYCD 64

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            IEV+++ +  +TV DNGRGIPV+ H K   KS LE+++T LHAGGKFD  +Y++SGGLH
Sbjct: 65  HIEVTINEDNSITVQDNGRGIPVDWHEK-EQKSALEVVMTVLHAGGKFDKGSYKVSGGLH 123

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE-KVRNKRGTRITFRPDPK 214
           GVG+S VNALS  +   V R   I+ Q++  G PL  +++         GT+ TF PD  
Sbjct: 124 GVGVSCVNALSKHMTTQVFRNGKIYQQEYECGKPLYAVKEMGLCEPGLSGTKQTFWPDDS 183

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF   + +    L    +  AYL+  ++   +  +   E+   P  E F+   G+K +++
Sbjct: 184 IFTV-SEYKHTTLQARLRELAYLNKGIRITLTDLRVKDEEG-KPLTEYFHSEEGVKEFVR 241

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               N + +  ++    TEK G     +E AI +       + SY N I T EGGTHE G
Sbjct: 242 YLNSNNTPLFDDVIYLNTEKSGVP---IECAIMYNTGYRENLHSYVNNINTREGGTHEGG 298

Query: 334 LRVALTRGIKKYAELT----QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            R ALTR +KKYA+        K  + I  +D     + ++SV + EP+F GQTKTKL +
Sbjct: 299 FRAALTRVLKKYADDNCSKALEKAKVEISGEDFREGLIAVISVKVSEPQFEGQTKTKLGN 358

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLR 448
            +    V  A+ +   +YL ++P EA  +++ V+  +  R+  RK RE  ++ + +    
Sbjct: 359 NEVSGAVNQAVGEALSNYLEEHPKEAKVIVDKVLLAATARVAARKARESVQRKSPMSGGG 418

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           +PGKLADCS       ELF+VEGDSAGGSAKQ RNR+ QA+LPLRGKILNV  A   K  
Sbjct: 419 MPGKLADCSSKDPEECELFLVEGDSAGGSAKQGRNRAFQAILPLRGKILNVEKAMWHKAF 478

Query: 509 NNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
            + ++ +++QALG R         +   + LRY+KVIIMTDADVDG+HI +L++T F++ 
Sbjct: 479 ESDEVNNIIQALGIRFGVDSEDSKEANIDKLRYKKVIIMTDADVDGSHIDTLIMTLFFRY 538

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
              +I+  +L++ +PPL+  ++G    Y   ++ +QK ++ +    +  I   R+KGLGE
Sbjct: 539 FPQVIQNGYLYIATPPLYLCSKGKVKEYCWTDQQRQKFIDAYGGGSENAIHTQRYKGLGE 598

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           M   QL ET M+   R L +V +     +  +     + LMG     R  FI+  A++  
Sbjct: 599 MNPDQLWETTMNPENRMLKQVHLE----NAAEADYVFSMLMGEDVGPRRDFIESNATYA- 653

Query: 683 DVGT 686
           ++  
Sbjct: 654 NIDA 657


>gi|325856512|ref|ZP_08172201.1| DNA gyrase, B subunit [Prevotella denticola CRIS 18C-A]
 gi|327313062|ref|YP_004328499.1| DNA gyrase subunit B [Prevotella denticola F0289]
 gi|325483481|gb|EGC86454.1| DNA gyrase, B subunit [Prevotella denticola CRIS 18C-A]
 gi|326945170|gb|AEA21055.1| DNA gyrase, B subunit [Prevotella denticola F0289]
          Length = 657

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 262/668 (39%), Positives = 381/668 (57%), Gaps = 28/668 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
             NQ   +NY AS+I++LEGLE VR RP MYIG   EK LHHL +E +DN++DE +AGY 
Sbjct: 2   AENQENENNYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLINETVDNSIDEAMAGYC 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             IEV+++ +  +TV D+GRGIPV+ H K    S LE+++T LHAGGKFD  +Y++SGGL
Sbjct: 62  KNIEVTINEDNSVTVEDDGRGIPVDEHKKLHK-SALEVVMTVLHAGGKFDKGSYKVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+S VNALS  +   V R   I+ Q++ +G PL P++   +     GTR  F PD  
Sbjct: 121 HGVGVSCVNALSTHMKSQVFRDGKIYQQEYEKGKPLYPVKVVGETEK-TGTRQQFWPDAG 179

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     F    + +  +  AYL+  ++   S  +   E       E F+   GLK +++
Sbjct: 180 IFTTTV-FQWDIVARRMRELAYLNAGIRITLSDLRPDPETGKT-RTEVFHAKDGLKEFVR 237

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               +R  +  ++   KTEK+G     +E A+ +  +    I SY N I T EGGTH  G
Sbjct: 238 YVDRHRQHLFDDVIYLKTEKQGIP---IEVAVMYNTDYTENIHSYVNNINTIEGGTHLQG 294

Query: 334 LRVALTRGIKKYAE------LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
            R ALTR +K YA+          K  I I  +D       ++S+ + EP+F GQTKTKL
Sbjct: 295 FRAALTRTLKAYADSDPQISKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKL 354

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRK 446
            + +    V+ A+ +    YL ++P EA  +   VI  +  R+  RK RE   RK  +  
Sbjct: 355 GNSEVSGAVQQAVGEALTDYLEEHPNEAKMICNKVILAATARVAARKARESVQRKNVMSG 414

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADCS       E+F+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV      +
Sbjct: 415 GGLPGKLADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQRHR 474

Query: 507 IRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           +   + +M+++Q++G R         +   + LRY+K+IIMTDADVDG+HI +L++T FY
Sbjct: 475 VFEAESVMNIIQSIGVRFGVEDEGDFEANTDKLRYDKIIIMTDADVDGSHIDTLIMTLFY 534

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI--SRFK 618
           + M  +IEQ HL++ +PPL++ T    S Y + ++ +Q  L+++    +    I   R+K
Sbjct: 535 RYMPKVIEQGHLYIATPPLYKCTYKKVSEYCYTDQQRQAFLDKYGNGVEDGKTIHTQRYK 594

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           GLGEM   QL ET MD   R L +V I     +  D  +  + LMG   + R +FI++ A
Sbjct: 595 GLGEMNPEQLWETTMDPKTRLLKQVTIE----NAADADEIFSMLMGDDVEPRREFIEKNA 650

Query: 679 SFIDDVGT 686
           ++  ++  
Sbjct: 651 TYA-NIDA 657


>gi|257871393|ref|ZP_05651046.1| DNA gyrase B subunit [Enterococcus gallinarum EG2]
 gi|257805557|gb|EEV34379.1| DNA gyrase B subunit [Enterococcus gallinarum EG2]
          Length = 649

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 250/653 (38%), Positives = 381/653 (58%), Gaps = 24/653 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  YDAS I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AG+A  I+V 
Sbjct: 12  AKEYDASQIQVLEGLEAVRKRPGMYIGSTSSEGLHHLVWEIVDNSIDEALAGFATAIQVI 71

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGVG S
Sbjct: 72  IEEDNSITVVDDGRGIPVDIQAK-TGRPAVETVFTILHAGGKFGGGGYKVSGGLHGVGSS 130

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  L V V ++  ++ Q++ RG  +  L+   +  ++ GT + F PDP+IF +  
Sbjct: 131 VVNALSTTLDVKVFKEGKVYYQEYHRGAVVEDLKVIGET-DRHGTTVHFVPDPEIFTETT 189

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F+  +L    +  A+L+  +K      +E       P  +E+++ GG+K+Y++    ++
Sbjct: 190 VFNFDKLATRVRELAFLNRGLKISIEDKREEH-----PVLKEYHYDGGIKSYVEHLNASK 244

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
           ++I  E    + E++G    TVE ++ + +       S+ N I T EGGTHESG + ALT
Sbjct: 245 TVIFPEPIYLEGEQQGI---TVEVSLQYTDSYHNNLLSFANNIHTYEGGTHESGFKTALT 301

Query: 340 RGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA  ++  +    ++  +D+      ++S+   +P+F GQTKTKL + + +   +
Sbjct: 302 RVINDYARKSKLMKENDENLTGEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRTVTD 361

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADC 456
               + F  +L++NP    +++E  +  S+ R   ++ RE+  RK A+    LPGKLADC
Sbjct: 362 RLFSEHFTKFLMENPAVGRQVVEKGLLASKARQAAKRAREMTRRKGALEISNLPGKLADC 421

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S N     ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  +KI  N++I  L
Sbjct: 422 SSNDPEKCELFIVEGDSAGGSAKQGRSREFQAILPIRGKILNVEKASMDKILANEEIRSL 481

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    + +     RY K++IMTDADVDGAHI +LLLT FY+ M  ++E  ++++  
Sbjct: 482 FTAMGTGFGADFDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYVYIAQ 541

Query: 577 PPLFRITQGTKSVYAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           PPL+ + QG    Y       E+  +  +E        K  + R+KGLGEM   QL ET 
Sbjct: 542 PPLYGVKQGKNIHYIQPGKNAEQDLKNTIESLPAT--PKPSVQRYKGLGEMDDHQLWETT 599

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           MD   R +LRV ++  +    +       LMG + + R  FI+E A ++ ++ 
Sbjct: 600 MDPENRMMLRVSVDDAI----EADQIFEMLMGDRVEPRRAFIEENAHYVKNLD 648


>gi|242372598|ref|ZP_04818172.1| DNA gyrase subunit B [Staphylococcus epidermidis M23864:W1]
 gi|242349653|gb|EES41254.1| DNA gyrase subunit B [Staphylococcus epidermidis M23864:W1]
          Length = 643

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 254/657 (38%), Positives = 380/657 (57%), Gaps = 21/657 (3%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
              ++ + +DNY A  I++LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AG
Sbjct: 3   NTLSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 62

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           YA+ IEV ++ + ++ V DNGRGIPV+   K   +  +E+ILT LHAGGKF    Y++SG
Sbjct: 63  YADQIEVIIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 121

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG SVVNALS +L V V R  TI+ Q + +G+P   L++  +  ++ GT I F+ D
Sbjct: 122 GLHGVGSSVVNALSQDLEVYVYRNETIYHQAYKKGVPQFDLKEIGET-DQTGTAIRFKAD 180

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
             IF +   ++   L +  +  A+L+  ++          E+     ++ +++ GG+K+Y
Sbjct: 181 GDIFTETTVYNYETLQQRIRELAFLNKGIQITLR-----DEREEEVREDSYHYEGGIKSY 235

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++   EN+  I  E       K       VE AI +       + +Y N I T EGGTHE
Sbjct: 236 VELLNENKEPIHQEPIYIHQTKDDI---EVEIAIQYNSGYATNLLTYANNIHTYEGGTHE 292

Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G + ALTR +  Y   ++  +        +D       I+S+   +P+F GQTKTKL +
Sbjct: 293 DGFKRALTRVLNSYGTQSKIIKEDKDRLSGEDTREGLTAIISIKHGDPQFEGQTKTKLGN 352

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448
            + ++ V+    + F+ +L +NP     ++E  I  S  R+  +K RE   RK+A+    
Sbjct: 353 SEVRQVVDKLFSEHFERFLYENPSVGRIIVEKGIMASRARVAAKKAREVTRRKSALDVSS 412

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS      +E+F+VEGDSAGGS K  R+   QA+LPLRGKILNV  A  ++I 
Sbjct: 413 LPGKLADCSSKNPDESEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRIL 472

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           NN +I  ++ A G     ++     RY K++IMTDADVDGAHI +LLLTFFY+ M  LIE
Sbjct: 473 NNNEIRQMITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 532

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             ++++  PPL+++TQG +  Y  ++    K+  E   +   K  ISR+KGLGEM A QL
Sbjct: 533 AGYVYIAQPPLYKLTQGKQKYYVFNDRELDKLKAEL--NPTPKWSISRYKGLGEMNADQL 590

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            ET M+   R++L+V +   +    D   +   LMG   + R +FI++ A +  ++ 
Sbjct: 591 WETTMNPEHRSMLQVRLEDAI----DADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 642


>gi|310777811|ref|YP_003966144.1| DNA gyrase subunit B [Ilyobacter polytropus DSM 2926]
 gi|309747134|gb|ADO81796.1| DNA gyrase subunit B [Ilyobacter polytropus DSM 2926]
          Length = 634

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 266/648 (41%), Positives = 379/648 (58%), Gaps = 20/648 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY A +I +LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AGY N IE+ +
Sbjct: 2   SNYQAENITVLEGLEAVRKRPGMYIGSTSARGLHHLVWEIVDNSVDESLAGYCNKIEIKV 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  + V DNGRGIPV  HPK   KS LEI+LT LHAGGKF+NS Y++SGGLHGVG+SV
Sbjct: 62  LKDNIIEVSDNGRGIPVGIHPKH-GKSALEIVLTVLHAGGKFENSNYKVSGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+   V V R   I +Q+++RG+P   ++   K  N+ GT + F+ D +IF     
Sbjct: 121 VNALSEWTEVFVKRDGKIHNQRYNRGVPEFDVKVVGKT-NETGTTVRFKADSEIFETL-E 178

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +D   L    +  AYL+  ++          E+    ++E   F GG+  +++   E ++
Sbjct: 179 YDFDVLKSRLKEMAYLNKGLEIVLID-----ERKEEIKEEILKFDGGIVDFIKEVEEGQA 233

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            +  E      E +      VE AI + E+    I S+ N I T EGGTH SG R+ALTR
Sbjct: 234 TLIPEPIYMAGESEDII---VEIAILYTEKQRETIYSFVNNINTHEGGTHVSGFRMALTR 290

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I + A+      +R  +    D+      I+S+ + EP+F GQTKTKL + +    V +
Sbjct: 291 IINEMAKSLGLLKERDGNFQGQDIREGVTAIISIKVPEPQFEGQTKTKLGNSEVTAVVSS 350

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            +      ++  +P +A  ++E ++   + R   +K RE V RK+A+    LPGKLADCS
Sbjct: 351 IMGQFLKMHMEDHPSDARNIIERILMSRKAREAAKKARELVMRKSALEVGSLPGKLADCS 410

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +E+FIVEGDSAGGSAKQ R+R  QA+LPLRGKI+NV  +G  K   N ++  +V
Sbjct: 411 SKKPEESEVFIVEGDSAGGSAKQGRDRHTQAILPLRGKIINVEKSGLHKALENNEVRSMV 470

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A G         E LRY K+IIMTDADVDGAHI +L+LTFFY+ M DLI   ++++  P
Sbjct: 471 TAFGANIGDDLELEKLRYHKIIIMTDADVDGAHIRTLILTFFYRYMVDLIHGGYIYIAQP 530

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PLF++T G    YA+ ++  ++I        K    + R+KGLGEM   QL ET M+ + 
Sbjct: 531 PLFKVTAGRTIQYAYSDKQLKEITTVMDADNKR-YTLQRYKGLGEMNPDQLWETTMNHDT 589

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           RTLL+V I+      ++     +KLMG K + R  FI+E + F+ ++ 
Sbjct: 590 RTLLQVTIDD----AREADILFDKLMGDKVEPRRNFIEEHSHFVKNLD 633


>gi|217967929|ref|YP_002353435.1| DNA gyrase, B subunit [Dictyoglomus turgidum DSM 6724]
 gi|217337028|gb|ACK42821.1| DNA gyrase, B subunit [Dictyoglomus turgidum DSM 6724]
          Length = 635

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 272/650 (41%), Positives = 385/650 (59%), Gaps = 22/650 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  D Y A SI+ILEG E VR RPGMYIG T  + LHHL  E++DN++DEV+AGY N I 
Sbjct: 4   TKKDKYTADSIQILEGTEAVRRRPGMYIGDTGIRGLHHLIFELVDNSIDEVMAGYCNYIL 63

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V L  +G + V DNGRGIPV+ HP+   K  LE++LTTLHAGGKF NS Y+ISGGLHGVG
Sbjct: 64  VELKKDGSVVVADNGRGIPVDIHPQA-KKPALEVVLTTLHAGGKFSNSIYKISGGLHGVG 122

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS +L V V R   IF Q + +G P+ PL  + +  ++ GT+I F PD +IF  
Sbjct: 123 LSVVNALSSKLEVEVMRDGKIFYQGYEKGKPVMPLTVRGET-DETGTKIRFYPDSEIFET 181

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              FD   +    +  A+L+  V      ++         +   F + GGL  +++   +
Sbjct: 182 -TKFDYDIVANRLRELAFLNPNVTIELRDER-------TGKSNVFKYEGGLLEFIEYLSK 233

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
            + ++   I+  + E+       +++   +   +  I SY N I T EGGTH +G R AL
Sbjct: 234 GKEILHEPIYMRREEENLIVEIVMQYNSGY---DELILSYANNIHTIEGGTHVTGFRTAL 290

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           TR +  +A      K   S+  DD+      I+SV + +P+F GQTKTKL + + ++ VE
Sbjct: 291 TRVVNNFARNWGLWKENESLSGDDVREGLTAIVSVKVPDPQFEGQTKTKLGNTEVRKFVE 350

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADC 456
             + +    Y  +NP     ++  +IE    R   RK RE+ R+ + +    LPGKLADC
Sbjct: 351 KVVEEELTEYFSENPEVGKLIISKIIEAYRARQAARKARELVRRKSLLESSLLPGKLADC 410

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS-EKIRNNQQIMD 515
           S+      ELFIVEG+SAGGSAKQAR+R  QA+LPLRGKILNV  A    KI ++++I  
Sbjct: 411 SERDPEKCELFIVEGESAGGSAKQARDRRYQAILPLRGKILNVEKAQHLTKILSSEEIKA 470

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ +LG      +    LRY K+IIMTDADVDGAHI +LLLTFFY+    LIE  ++++ 
Sbjct: 471 IIASLGTGIGQDFDLSKLRYHKIIIMTDADVDGAHIRTLLLTFFYRHFRPLIEGGYIYIA 530

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+ + +G +  YA+ EE K++IL E+       + I R+KGLGEM   QL+ET MD 
Sbjct: 531 QPPLYLLKKGKEERYAYSEEEKEEILREWG--YPDNVYIQRYKGLGEMDPEQLRETTMDP 588

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            KR LL+V I   L    + +   + LMG   +ER  FI+++A F+ ++ 
Sbjct: 589 QKRILLQVTIEDAL----EAERLFSILMGNNVEERRSFIEQKAKFVRNLD 634


>gi|88803546|ref|ZP_01119071.1| DNA gyrase, B subunit [Polaribacter irgensii 23-P]
 gi|88780558|gb|EAR11738.1| DNA gyrase, B subunit [Polaribacter irgensii 23-P]
          Length = 646

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 253/657 (38%), Positives = 385/657 (58%), Gaps = 23/657 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +  + +YDASSI+ LEG+E VRMRP MYIG    + LHHL  EV+DN++DE + GY 
Sbjct: 1   MSEEKKTYSYDASSIQALEGMEHVRMRPSMYIGDVGPRGLHHLVYEVVDNSIDEAMGGYC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I+V+++ +  +T  DNGRGIPV  H K    S L++++T + AGGKFD  +Y++SGGL
Sbjct: 61  DTIDVTINEDNSVTTRDNGRGIPVGIHEK-EGVSALQVVMTKIGAGGKFDKDSYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+S VNALSD L  T+ ++  ++ Q++S+G  L P++   +  +  GT +TF PD  
Sbjct: 120 HGVGVSCVNALSDLLTATIHKEGKVWQQEYSKGKALYPVKTIGE-SDFTGTIVTFLPDKS 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     F+   L    +  +YL+  +    +  +   ++      E FY   GL  +++
Sbjct: 179 IFKQTTEFNYDTLATRMRELSYLNKGITITLTDKRSTDDEG-NFISEVFYSDEGLPEFIK 237

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
                R  ++S+I + + EK G     VE A+ +       + SY N I T EGGTH SG
Sbjct: 238 YLDSTREQLTSKIISMEGEKNGIP---VEVAMVYNTSYAENLHSYVNNINTHEGGTHLSG 294

Query: 334 LRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R  LT  +KKYA+ +   + +      DD       I+SV + EP+F GQTKTKL + +
Sbjct: 295 FRRGLTGTLKKYADESGLLKNVKFEIAGDDFREGLTAIISVKVAEPQFEGQTKTKLGNRE 354

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLP 450
               V  ++ +   +YL +NP +A  +++ VI  +  R   RK RE+  RKT +    LP
Sbjct: 355 VSAAVSQSVSEMLTNYLEENPNDAKIIVQKVILAATARHAARKAREMVQRKTVMSIGGLP 414

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV  A   K+  N
Sbjct: 415 GKLSDCSETDPAQCEIFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFEN 474

Query: 511 QQIMDLVQALGCRTRSQYREEDLR-----YEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           ++I ++  ALG    ++     L      Y KV+IM DADVDG+HIA+L+LTFF++ M +
Sbjct: 475 EEIKNMFTALGVSIGTEEDPRALNLSKVRYHKVVIMCDADVDGSHIATLILTFFFRYMRE 534

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           ++EQ ++++ +PPL+ + +G K  YA D++ +  I ++      G + I R+KGLGEM A
Sbjct: 535 MVEQGYIYIATPPLYLVKKGQKREYAWDDDQRDFIAQQMG----GTVNIQRYKGLGEMNA 590

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            QL +T M+   RTL +V I+    S  +     + LMG +   R +FI++ A +  
Sbjct: 591 DQLWDTTMNPEFRTLRQVVID----SPTEADRVFSMLMGDEVPPRREFIEKNAKYAK 643


>gi|269797076|ref|YP_003310976.1| DNA gyrase subunit beta [Veillonella parvula DSM 2008]
 gi|269093705|gb|ACZ23696.1| DNA gyrase, B subunit [Veillonella parvula DSM 2008]
          Length = 633

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 251/650 (38%), Positives = 367/650 (56%), Gaps = 23/650 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
              NY A +I++LEGL+ VR RPGMYIG T  + LHHL  EV+DN++DE +AGYA  IEV
Sbjct: 2   PEQNYGAQNIQVLEGLDAVRKRPGMYIGSTSARGLHHLVYEVVDNSVDEALAGYATHIEV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           S++ +  +TVVD+GRGIP   H      S +E++LT LHAGGKF    Y++SGGLHGVGI
Sbjct: 62  SINPDNSVTVVDDGRGIPTGMHE--SGMSAVELVLTKLHAGGKFGGGGYKVSGGLHGVGI 119

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+   V V++   +    F+RG   S L +  K     GT + F+PD +IF   
Sbjct: 120 SVVNALSEWTKVQVSQNGIVQEISFARGHKTSELHEIGKASG-TGTTVIFKPDAEIFETT 178

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L    Q  A+L+  ++   S  +        P  E F++ GGL +++    EN
Sbjct: 179 V-FSFDTLKMRLQELAFLNKGLRITLSDLR-----LEEPRVESFHYEGGLISFITFLNEN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVAL 338
           +  I+  +   +  K       V+ A+ + +   E   S+ N I T +GGTH SG R AL
Sbjct: 233 KEAINPTVINIENTKDDV---VVDVALQYNDSYSENLLSFVNNINTIDGGTHLSGFRAAL 289

Query: 339 TRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y   +   +    ++  +D+      ++SV + EP+F GQTKTKL + + +   
Sbjct: 290 TRTLNDYGRKSGLIKENESNLSGEDVREGLTAVVSVKVLEPQFEGQTKTKLGNSEVKGIT 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           +  + +    +  ++P +A K++E   +        R+ +    RK A+    LPGKLAD
Sbjct: 350 DVIVTEGLKTFFEEHPQDAKKIIEKATMASRAREAARKARDLTRRKNALEVSSLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS+     TE+++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI  N +I  
Sbjct: 410 CSEKDTSMTEIYLVEGDSAGGSAKQGRDRRYQAILPLRGKILNVEKARLDKILANNEIRS 469

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ A G     ++     RY K+IIMTDADVDGAHI +LLLTFFY+ M  L+E+ H+++ 
Sbjct: 470 MITAFGTGIGDEFDITKSRYNKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIYIA 529

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL++I +G    Y + +      L+E  + G     I R+KGLGEM   QL ET M+ 
Sbjct: 530 QPPLYQIKKGKSHWYVYSDAELTAKLDEVGRDGT---TIQRYKGLGEMNPEQLWETTMNP 586

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             RT+L+V +   +    +       LMG K + R KFI++ A ++ ++ 
Sbjct: 587 ENRTILQVSLEDSI----EADKIFTVLMGDKVEPRRKFIEDNAKYVRNLD 632


>gi|294794197|ref|ZP_06759333.1| DNA gyrase, B subunit [Veillonella sp. 3_1_44]
 gi|294454527|gb|EFG22900.1| DNA gyrase, B subunit [Veillonella sp. 3_1_44]
          Length = 645

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 251/650 (38%), Positives = 368/650 (56%), Gaps = 23/650 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
              NY A +I++LEGL+ VR RPGMYIG T  + LHHL  EV+DN++DE +AGYA  IEV
Sbjct: 14  PEQNYGAQNIQVLEGLDAVRKRPGMYIGSTSARGLHHLVYEVVDNSVDEALAGYATHIEV 73

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           S++ +  +TVVD+GRGIP   H      S +E++LT LHAGGKF    Y++SGGLHGVGI
Sbjct: 74  SINPDNSVTVVDDGRGIPTGMHE--SGMSAVELVLTKLHAGGKFGGGGYKVSGGLHGVGI 131

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+   V V++   +    F+RG   S L +  K     GT + F+PD +IF   
Sbjct: 132 SVVNALSEWTKVQVSQNGIVQEISFARGHKTSELHEIGKAEG-TGTTVIFKPDAEIFETT 190

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L    Q  A+L+  ++   S  +        P  E F++ GGL +++    EN
Sbjct: 191 V-FSFDTLKMRLQELAFLNKGLRITLSDLR-----LEEPRVESFHYEGGLVSFITFLNEN 244

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVAL 338
           +  I+  +   +  K       V+ A+ + +   E   S+ N I T +GGTH SG R AL
Sbjct: 245 KEAINPTVINIENTKDDV---VVDVALQYNDSYSENLLSFVNNINTIDGGTHLSGFRAAL 301

Query: 339 TRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y   +   +    ++  +D+      ++SV + EP+F GQTKTKL + + +   
Sbjct: 302 TRTLNDYGRKSGLIKENESNLSGEDVREGLTAVVSVKVLEPQFEGQTKTKLGNSEVKGIT 361

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           +  + +    +  ++P +A K++E   +        R+ +    RK A+    LPGKLAD
Sbjct: 362 DVIVTEGLKTFFEEHPQDAKKIIEKATMASRAREAARKARDLTRRKNALEVSSLPGKLAD 421

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS+     TE+++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI  N +I  
Sbjct: 422 CSEKDTSMTEIYLVEGDSAGGSAKQGRDRRYQAILPLRGKILNVEKARLDKILANNEIRS 481

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ A G     ++     RY K+IIMTDADVDGAHI +LLLTFFY+ M  L+E+ H+++ 
Sbjct: 482 MITAFGTGIGDEFDITKSRYNKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIYIA 541

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL++I +G    Y + +      L+E  + G     I R+KGLGEM   QL ET M+ 
Sbjct: 542 QPPLYQIKKGKSHWYVYSDAELTAKLDEVGRDGT---TIQRYKGLGEMNPEQLWETTMNP 598

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           + RT+L+V +   +    +       LMG K + R KFI++ A ++ ++ 
Sbjct: 599 DNRTILQVSLEDSI----EADKIFTVLMGDKVEPRRKFIEDNAKYVRNLD 644


>gi|255527581|ref|ZP_05394445.1| DNA gyrase, B subunit [Clostridium carboxidivorans P7]
 gi|296186779|ref|ZP_06855180.1| DNA gyrase, B subunit [Clostridium carboxidivorans P7]
 gi|255508714|gb|EET85090.1| DNA gyrase, B subunit [Clostridium carboxidivorans P7]
 gi|296048493|gb|EFG87926.1| DNA gyrase, B subunit [Clostridium carboxidivorans P7]
          Length = 637

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 255/653 (39%), Positives = 384/653 (58%), Gaps = 22/653 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           ++     YD + I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AG+   
Sbjct: 2   SEQKKQVYDENQIQVLEGLEAVRKRPGMYIGSTSARGLHHLVYEIVDNSIDEALAGFCKN 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV +  +  +TV D+GRG+PV  HPK   K T+E+I+T LHAGGKF    Y++SGGLHG
Sbjct: 62  IEVFIHKDNSITVTDDGRGMPVGMHPKM-KKPTVEVIMTVLHAGGKFGGGGYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS+   V V R+  I+ Q F RG   + LE         GT+I F+PD +IF
Sbjct: 121 VGASVVNALSELCEVEVKREGHIWKQAFERGKVKTGLEIVGDSEGH-GTKIHFKPDAEIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   +D   L +  +  A+L+  ++   S ++       I + E F++ GG+K+++   
Sbjct: 180 EEV-DYDYDTLAQRLRELAFLNRNIRINLSDER-------IDKLEVFHYEGGIKSFVSYL 231

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
             N+ +I+ E    +  K      +VE +I + +     I S+ N I T EGGTH +G +
Sbjct: 232 NRNKQVINKEPIYVEGNK---QDCSVEISIQYNDGYTENIFSFANNIDTVEGGTHLAGFK 288

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR    YA+      +   ++  +D+      ++SV + +P+F GQTKTKL + + +
Sbjct: 289 SALTRAFNDYAKKFGILKENDKNLSGEDIREGLTAVISVKLIDPQFEGQTKTKLGNSEVR 348

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
             V+  + +    +L +NP  A  +L+  +  S  R   RK RE   RK+ +    LPGK
Sbjct: 349 GIVDGIVGEGVSSFLQENPQVAKSILDKSLMASRAREAARKARELTRRKSILENTSLPGK 408

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS       E+++VEGDSAGGSAKQ RNR  QA+LPLRGKI+NV     +KI   ++
Sbjct: 409 LADCSSKDPKECEIYLVEGDSAGGSAKQGRNRRFQAILPLRGKIMNVEKQRLDKILGYEE 468

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++ A G      +  E +RY+++IIMTDADVDGAHI +LLLTFFY+ M +L++Q H+
Sbjct: 469 IRAMITAFGGGIGKDFDVEKIRYDRIIIMTDADVDGAHIRTLLLTFFYRYMKELVDQGHV 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL+++ +G K  YA+ ++  +K+LE+          I R+KGLGEM A+QL +T 
Sbjct: 529 YIAQPPLYKVAKGKKEHYAYSDKELEKLLEDVGGKDNNT-NIQRYKGLGEMDATQLWDTT 587

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           M+ ++R LL+V +   +       +    LMG K + R +FIQE A  + ++ 
Sbjct: 588 MNPDERVLLQVTVEDAM----AADEIFTILMGDKVEPRREFIQENAKKVINLD 636


>gi|229824639|ref|ZP_04450708.1| hypothetical protein GCWU000282_01986 [Catonella morbi ATCC 51271]
 gi|229786010|gb|EEP22124.1| hypothetical protein GCWU000282_01986 [Catonella morbi ATCC 51271]
          Length = 640

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 249/651 (38%), Positives = 376/651 (57%), Gaps = 21/651 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
            +   YDA  I++LEGLE VR RPGMYIG T    LHHL  E++DN++DE +AGY + IE
Sbjct: 6   QSPQQYDAGQIQVLEGLEAVRKRPGMYIGSTSIVGLHHLVWEIVDNSIDEALAGYCDHIE 65

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+++ N  +TV DNGRGIPV+  P+   +  +E + T LHAGGKF    Y++SGGLHGVG
Sbjct: 66  VTIEANNSITVQDNGRGIPVDIQPQ-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVG 124

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS EL V V+R   ++ Q++ RG     LE   +     GT++ F PDP IF +
Sbjct: 125 ASVVNALSTELTVQVSRDGKLYQQRYHRGAVEGDLEVIGQATE-TGTKVNFLPDPAIFTE 183

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+  RL K  +  A+L+  ++      +   E     EK+ F++ GG+K+Y+Q   +
Sbjct: 184 TTVFEYERLKKRIRELAFLNKGLRITIEDKRLDQE-----EKDSFHYEGGIKSYVQHLNQ 238

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVA 337
           +++ I  E    + E        VE ++ + +     I S+ N I T EGG+HE+G +  
Sbjct: 239 HKTPIFEEPIYIEGEVDDIQ---VEISMQYTDSYHTTILSFANNIHTHEGGSHEAGFKTG 295

Query: 338 LTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR I  YA      +    ++  +D+      +LS+   +P+F GQTKTKL + + +  
Sbjct: 296 LTRVINDYARKMNLIKENDENLTGEDVREGLTLVLSIKHPDPQFEGQTKTKLGNSEVRAI 355

Query: 396 VENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454
            +    + FD YL++NP  A  +++  ++        +R +    RK+ +    LPGKLA
Sbjct: 356 TDRLFSNGFDVYLMENPKVARIIVDKGILAAKARMAAKRAREMTRRKSVMEISNLPGKLA 415

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS   A   ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  +KI NN++I 
Sbjct: 416 DCSSREAELCELFIVEGDSAGGSAKQGRSRMYQAILPIRGKILNVEKASMDKILNNEEIR 475

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            L  A+G     ++     RY K+I+MTDADVDGAHI +LLLT  Y+ M  L++  ++++
Sbjct: 476 SLFTAMGTGFGGEFDVAKARYHKLILMTDADVDGAHIRTLLLTLIYRYMRPLLDAGYVYI 535

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL+++ QG +++Y   +   ++  EE   +   +  I R+KGLGEM   QL ET M+
Sbjct: 536 AKPPLYQVKQGKRAIYLDTDAELKEWQEE---NPNARYTIQRYKGLGEMNEDQLWETTMN 592

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              R +L+V +   +    + +  +  LMG   + R  FI++ A +++++ 
Sbjct: 593 PENRRMLQVTVEDAI----EAEAVLEMLMGDDVEPRRAFIEDNAVYVENLD 639


>gi|17232757|ref|NP_489305.1| DNA gyrase subunit B [Nostoc sp. PCC 7120]
 gi|17134404|dbj|BAB76964.1| DNA gyrase B subunit [Nostoc sp. PCC 7120]
          Length = 645

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 252/651 (38%), Positives = 368/651 (56%), Gaps = 14/651 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +Y A  I++LEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AGY   IEV 
Sbjct: 2   TSSYSADQIQVLEGLEAVRKRPGMYIGSTGPRGLHHLVYEVVDNSIDEALAGYCTHIEVE 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +G + V D+GRGIP++ H +   KS LE ++T LHAGGKF    Y++SGGLHGVGIS
Sbjct: 62  INADGSVAVTDDGRGIPIDTHSR-TGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGIS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ + VTV R   + +Q++ RG+P++ L        + GT +TF+PD +IF +  
Sbjct: 121 VVNALSEVVEVTVWRDKKVHTQRYERGVPVTELITNPYKEARTGTSVTFKPDTQIFTNSI 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   L    +  AYL+  VK  ++ ++    K   P+ E + + GG+K Y+     ++
Sbjct: 181 EFDYITLSGRLRELAYLNAGVKITFTDNRLELLKSDTPKVESYEYKGGIKEYIAYMNRDK 240

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
             +  EI   + E+    +  V            +  + N I T +GGTH  GL+  LTR
Sbjct: 241 QPLHEEIIYVQGERNNV-QIEVSLQWCTDAYTDNVLGFANNIRTIDGGTHLEGLKAVLTR 299

Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +   A      +    ++  + +      ++SV + +PEF GQTKTKL + + +  V++
Sbjct: 300 TLNTIARKRNKIKEHEPNLSGEHVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDS 359

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            + +    YL  +P  A  +L+  I+  +     R  RE V RK+ +    LPGKLADCS
Sbjct: 360 LVGEVLTEYLEFHPGIADSILDKAIQAFKAAEAARHARELVRRKSVLESSPLPGKLADCS 419

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILN+      KI  N +I  L+
Sbjct: 420 SRDPSESEIYIVEGDSAGGSAKQGRDRRTQAILPLRGKILNIEKTDDSKIYKNNEIQALI 479

Query: 518 QALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
            ALG   + +  +   LRY ++IIMTDADVDGAHI +L+LTFFY+    LIEQ  +++  
Sbjct: 480 TALGLGVKGEEFDSTQLRYHRIIIMTDADVDGAHIRTLILTFFYRYQRALIEQGFIYIAC 539

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+++ +G    Y + E   Q+ + +F  +      I RFKGLGEM+  QL  T M+  
Sbjct: 540 PPLYKVERGRNYEYCYSERELQQAIAKFPANAN--YTIQRFKGLGEMMPEQLWTTTMNPE 597

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS--FIDDVG 685
            RTL RVEI        +       LMG +   R +FI+   S   + D+ 
Sbjct: 598 TRTLKRVEIED----AAEADRIFTILMGDRVAPRREFIETYGSKLNLTDLD 644


>gi|254526641|ref|ZP_05138693.1| DNA gyrase, B subunit [Prochlorococcus marinus str. MIT 9202]
 gi|221538065|gb|EEE40518.1| DNA gyrase, B subunit [Prochlorococcus marinus str. MIT 9202]
          Length = 655

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 259/657 (39%), Positives = 379/657 (57%), Gaps = 15/657 (2%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           S    +   S++Y A  I++LEGLEPVR RPGMYIG T  + LHHL  EV+DN++DE +A
Sbjct: 2   SEDKRSNKISNDYGAEQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+ + IE+ L  +G   + DNGRGIP + HP+   KS LE +LT LHAGGKF +  Y++S
Sbjct: 62  GHCDHIEIILRADGSALISDNGRGIPTDIHPR-TGKSALETVLTVLHAGGKFGSGGYKVS 120

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS--PLEKKEKVRNKRGTRITF 209
           GGLHGVGISVVNALS+ ++VTV R  + F+Q+F +G+       +K+    +K+GT I F
Sbjct: 121 GGLHGVGISVVNALSEWVNVTVYRDGSEFNQRFEKGLSKGELQTKKQIGKSSKKGTTICF 180

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +PD  IF     F+ A L    +  AYL+G VK  +  ++         E E + + GG+
Sbjct: 181 KPDKTIFSGGIEFEYALLSSRLRELAYLNGGVKIVFRDERNQLSDGSFKE-EIYLYQGGI 239

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGT 329
           K Y++     +  I  EI    ++++  +             +  I  + N I T +GGT
Sbjct: 240 KEYVEYMNAEKESIHPEIIYVDSQRENVY-VEAALQWCSDVYSDNILGFANNIRTIDGGT 298

Query: 330 HESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  GL+  LTR     A+    ++ I  ++  +++      +LSV + +PEF GQTKTKL
Sbjct: 299 HIEGLKTVLTRTFNNLAKKRGKRKDIEKNLAGENIREGLTVVLSVKVPDPEFEGQTKTKL 358

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
            + + +  V++ + +    Y+  NP     +LE  I+        R+ RE V RK+ +  
Sbjct: 359 GNTEVRGIVDSLIGEALTKYMEFNPGILDLILEKAIQSFNAAEAARRARELVRRKSVLES 418

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADCS      +E++IVEGDSAGGSAKQ R+R+ QA+LPLRGKILN+      K
Sbjct: 419 STLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRNFQAILPLRGKILNIEKTDDTK 478

Query: 507 IRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           I  N +I  L+ ALG   + +  +   LRY +V+IMTDADVDGAHI +LLLTFFY+   +
Sbjct: 479 IYKNTEIQSLITALGLGIKGEEFDVSSLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRE 538

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           L+E+  +++  PPL+++ +G    Y ++E   +  +E F ++      I RFKGLGEM+ 
Sbjct: 539 LVEKGFIYIACPPLYKVERGKNHNYCYNENQLKNTIEGFGENAN--YNIQRFKGLGEMMP 596

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            QL +T M+   R + RVEI   L    +     N LMG K   R +FI+  +S +D
Sbjct: 597 KQLWDTTMNPQTRMMKRVEIEDAL----EADRIFNILMGDKVAPRREFIETHSSNLD 649


>gi|190710575|gb|ACE95118.1| gyrase subunit B [Bacillus thuringiensis serovar kenyae]
          Length = 627

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 263/644 (40%), Positives = 379/644 (58%), Gaps = 21/644 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R+  I  QK+ RGIP++ L+      ++ GT   F+PDP+IF +  
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +D   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E    +  K G     VE ++ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K++E   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF+I QG K  YA++++  +KIL E     K    I R+KGLGEM  + + ET MD  
Sbjct: 530 PPLFKIQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTLIWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            R+LL+V +   +    +  ++   LMG K + R  FIQE A +
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKY 627


>gi|26553455|ref|NP_757389.1| DNA gyrase subunit B [Mycoplasma penetrans HF-2]
 gi|26453461|dbj|BAC43793.1| DNA gyrase subunit B [Mycoplasma penetrans HF-2]
          Length = 649

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 262/664 (39%), Positives = 387/664 (58%), Gaps = 29/664 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              ++  + Y AS+I+ILEGLE VR RPGMYIG TD K LHH+  E++DN++DE + G A
Sbjct: 1   MNKETKKNTYSASNIKILEGLEAVRKRPGMYIGSTDIKGLHHMVWEIVDNSIDEAMTGNA 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I ++L   G   V D+GRGIPVE H K   KST+E +LT LHAGGKFDN +Y++SGGL
Sbjct: 61  SEITITLTKEGSAKVQDDGRGIPVEKHAK-TKKSTVETVLTVLHAGGKFDNDSYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEK-KEKVRNKRGTRITFRPD 212
           HGVG SVVNALS  L V V ++      +F  G  P++ L+   EK   K GT + F PD
Sbjct: 120 HGVGASVVNALSSWLKVWVYKEYKEHYIEFKDGGKPVADLKVTNEKASIKNGTIVEFYPD 179

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            +I      FDA  +    +  AYL+  +K  +  ++         +KE F F GG+K +
Sbjct: 180 FEIMERA-EFDADTIKSRLKQLAYLNKGIKINFIDER-------TDDKETFLFAGGIKQW 231

Query: 273 LQTKLENRSLISSEIFTGKTEK-------KGTHRGTVEWAIAWCEENPE-ITSYCNTILT 324
           ++     +  I   I   + E+       K  +   VE A  + +       ++CN I T
Sbjct: 232 VEELNNEKEPIVPTIVYDEREESVKAANNKDKYNIRVEVAFQYNKTYNNSTFTFCNNINT 291

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQ 382
            EGG+HE G + AL + I K+A   +  +     I  +D +     I+S+    P++ GQ
Sbjct: 292 TEGGSHEEGFKFALQKIINKFAVEKKLLKETDEKISKEDAIEGLTAIVSIKHPNPQYEGQ 351

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK KL + + +  V N + + F+ YL++NP +A  +++  +   E R +  + RE  R+ 
Sbjct: 352 TKRKLGNSEVRPFVSNVVSEIFEKYLLENPEDANVIIKKCLLAMEARKKSFEAREATRRK 411

Query: 443 A-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           +      LPGKLADCS      +EL+IVEGDSAGGSAK  R+R  QA+LPL+GKI+NV  
Sbjct: 412 SPFESNSLPGKLADCSTKDKEISELYIVEGDSAGGSAKLGRDRIFQAILPLKGKIINVEK 471

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
           A S+KI +N++I++L+ A+G     +++ + LRY K+I+MTDADVDG+HI  LLLTF ++
Sbjct: 472 AKSDKIFSNEEIINLITAIGAGVGPEFKIDKLRYNKIILMTDADVDGSHIRILLLTFLFR 531

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
            MY L+E  ++++  PPLF+ + G  S YA+DE+  ++  +E   + K K +I R+KGLG
Sbjct: 532 YMYPLLENGNVYIACPPLFKFSVGKSSKYAYDEKTLEEFKKE---NSKVKYQIQRYKGLG 588

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           EM   QL ET MD   R LL+V I   LN         + LMG +   R +FI++ A ++
Sbjct: 589 EMNPDQLWETTMDPKNRLLLKVTIEDALN----ADKVFSLLMGDEVAPRREFIEKNAKYV 644

Query: 682 DDVG 685
            ++ 
Sbjct: 645 KNLD 648


>gi|261403882|ref|YP_003240123.1| DNA gyrase subunit B [Paenibacillus sp. Y412MC10]
 gi|261280345|gb|ACX62316.1| DNA gyrase, B subunit [Paenibacillus sp. Y412MC10]
          Length = 636

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 266/647 (41%), Positives = 380/647 (58%), Gaps = 22/647 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            YD + I++LEGLE VR RPGMYIG T  K LHHL  EV+DN++DE +AG  + IE+ + 
Sbjct: 7   TYDENQIQVLEGLEAVRKRPGMYIGSTSAKGLHHLVWEVVDNSIDEAMAGICDHIEIIVH 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV+DNGRGIPV  + K   KSTLE+++T LHAGGKF    Y++SGGLHGVG+SVV
Sbjct: 67  EDNSITVIDNGRGIPVGENAKL-KKSTLEVVMTVLHAGGKFGGGGYKVSGGLHGVGVSVV 125

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS ++ V V R   I+ Q++ RG+P   ++      +  GT +TF PDP+IF +   +
Sbjct: 126 NALSSKVVVQVKRDGHIYQQEYHRGVPQYDIKVIGDSDDH-GTTVTFLPDPEIFTETTVY 184

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   LL   +  A+L+  +    + ++           + F + GG+  Y++   E +  
Sbjct: 185 DYTTLLTRIRELAFLNKGIALTLTDER-------TGASDYFKYEGGIIEYVKFLNEKKEA 237

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +  +    +  +       VE ++ + +     I S+ N I T EGGTHESG + ALTR 
Sbjct: 238 LHEDPIYVEGSRDNIQ---VEVSLQYNDSYTENIYSFANNINTHEGGTHESGFKSALTRI 294

Query: 342 IKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  YA  T   +    ++  DD+      I+SV + EP+F GQTKTKL + + +  VE+ 
Sbjct: 295 INDYARKTGLIKDNTSNLSGDDVREGLTAIISVKVPEPQFEGQTKTKLGNSEVRGIVESL 354

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458
             +    +L +NP  + ++LE  ++ S  R   RK R    RK+A+    LPGKLADCS 
Sbjct: 355 FAEKLQEFLQENPAVSRRILEKALQASRAREAARKAREMTRRKSALEVSALPGKLADCSS 414

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
             A  +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  ++I +N +I  ++ 
Sbjct: 415 KDASISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDRILSNAEIRAIIT 474

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG      +     RY K+IIMTDADVDGAHI +LLLTFFY+ M  L+E  ++++  PP
Sbjct: 475 ALGTGIAEDFDLSKARYHKIIIMTDADVDGAHIRTLLLTFFYRYMRKLVEAGYIYIAQPP 534

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           LF+I +     YA  E  + +I++EF ++   KI + R+KGLGEM A QL ET MD   R
Sbjct: 535 LFKIERNKVIRYAGSERERDEIIKEFGEN--VKINVQRYKGLGEMNAGQLWETTMDPESR 592

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T+L+V I   +          + LMG   + R  FIQE A  + ++ 
Sbjct: 593 TMLQVTIEDAI----LADTLFDTLMGDNVEPRRDFIQEHAKSVRNLD 635


>gi|168335262|ref|ZP_02693363.1| DNA gyrase subunit B [Epulopiscium sp. 'N.t. morphotype B']
          Length = 635

 Score =  617 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 255/650 (39%), Positives = 375/650 (57%), Gaps = 21/650 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           +++ YD S I+ILEGLE VR RP MYIG T  K LHHL  E++DNA+DE +AG+ + + V
Sbjct: 2   SNNIYDESQIQILEGLEAVRKRPDMYIGSTSAKGLHHLVYEIVDNAVDEALAGFCDKVTV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V+DNGRGIPV  H K    S  E++ T LHAGGKF    Y++SGGLHGVG 
Sbjct: 62  TIHKDNSISVLDNGRGIPVGIH-KDKGISAAEVVFTILHAGGKFGGGGYKVSGGLHGVGA 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS  L   V +   I+ QKF +G  +  L       ++ GT + F PD  IF + 
Sbjct: 121 SVVNALSSWLISRVYQHGKIYEQKFKKGHVVESLHPIG-TTDQTGTFVHFLPDETIFEET 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             +D A L K  Q  A+L+  +K     ++          ++ F++ GG+  ++    +N
Sbjct: 180 V-YDFAILKKRFQETAFLTKGLKIKLIDER-----VEPKLEKIFHYEGGVSEFVLFLNKN 233

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF  + EK      ++E A    +     I S+ N I T EGGTH SG + AL
Sbjct: 234 KTPIYENIFYCEGEKDDV---SIEVAFCHNDGYNENIFSFANNINTIEGGTHLSGFKNAL 290

Query: 339 TRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           T+ +  YA+  +  +        +D+     G++S+ I EP+F GQTKTKLV+ + +  V
Sbjct: 291 TKTVNDYAKKMKILKDNDKSLSGEDIREGITGVISIKISEPKFEGQTKTKLVNTNVRTIV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
           +N + + F  +L QNP  A  +++     S  R   RK R+   RK  +    LPGKLAD
Sbjct: 351 DNIVSEKFMIFLEQNPTIAKIIIQKATMASHARDAARKARDLTRRKNVLENSTLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS+      E++IVEGDSAGGSAK AR+R NQA+LPLRGKILNV  A  +K+  +++I +
Sbjct: 411 CSERDPKKCEIYIVEGDSAGGSAKSARSRQNQAILPLRGKILNVEKARLDKMLASEEIRN 470

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ A G         E LRY K+I+MTDADVDGAHI +LLLTFFY+   +LI    +++ 
Sbjct: 471 MITAFGAGINEDLNIEKLRYHKIILMTDADVDGAHIRTLLLTFFYRFYRELITGGFIYIA 530

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+ + +  K  YA+++   + IL E  ++G  ++   R+KGLGEM   QL +T M+ 
Sbjct: 531 QPPLYLVEKNKKKHYAYNDRELELILTEIGRNGITRM--QRYKGLGEMNPDQLWDTTMNP 588

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             RTL++V I   +    +  +    LMG K + R +FI+E A  + ++ 
Sbjct: 589 ATRTLVKVNIEDAV----EADEIFTALMGDKVEPRREFIKEYAKLVKNLD 634


>gi|312143598|ref|YP_003995044.1| DNA gyrase, B subunit [Halanaerobium sp. 'sapolanicus']
 gi|311904249|gb|ADQ14690.1| DNA gyrase, B subunit [Halanaerobium sp. 'sapolanicus']
          Length = 636

 Score =  617 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 261/647 (40%), Positives = 389/647 (60%), Gaps = 24/647 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y+A  I++L+GLE VR RPGMYIG T  K LHHL  EV+DN++DE +AGY + I+V++ 
Sbjct: 9   DYNADQIQVLKGLEAVRKRPGMYIGSTGIKGLHHLVWEVVDNSIDEFLAGYGDEIKVTIH 68

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            N  +TV D GRGIP + H K      ++++LTTLHAGGKF+N++Y++SGGLHGVG+SVV
Sbjct: 69  ENNEITVEDYGRGIPADIH-KDSGLPAVQVVLTTLHAGGKFNNNSYKVSGGLHGVGVSVV 127

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS++L +T   +   + Q F +G+P S LEK  K +   GT I F+ D  IF  +  +
Sbjct: 128 NALSEKLVLTTHWEGNKYRQVFKKGVPTSKLEKLGKTKR-SGTVIRFKADSDIFAAR-DY 185

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L    Q  AYL+  +      ++   EK  +     F + GG+K +++   ++R++
Sbjct: 186 KFENLAHRLQESAYLNKDLTLILIDERGEGEKKKV-----FQYDGGIKAFVEFLNKDRNV 240

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           I+ +I   +++ +      VE AI + +     I SY N I T +GG H +G + ALTR 
Sbjct: 241 INEDIIYFESKPED---YEVEMAIQYNDGYNERIYSYANNINTIDGGYHLTGFKTALTRA 297

Query: 342 IKKYAELTQNK--RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  +A+       +  S+   D+      I++V + EP+F GQTKTKL + + +  VE+ 
Sbjct: 298 INNFAKNNNRLPAKISSLRGKDVREGITAIINVKLPEPQFEGQTKTKLGNSELRSIVESE 357

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    Y   NP  A K+++  ++    R   +K RE   RK+A+    LPGKLADCS 
Sbjct: 358 VYEYLSLYFDTNPDLANKVIDKAVQAVRARKASKKARELTKRKSALNSNALPGKLADCSS 417

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
             A  +ELFIVEGDSAGGSAKQ R+R+ QA+LPL+GKILNV  A  +KI NN +I  ++ 
Sbjct: 418 KKAEKSELFIVEGDSAGGSAKQGRDRNFQAILPLKGKILNVERARLDKILNNTEIASIIT 477

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG      +  ++LRY K+IIMTDADVDGAHIA+L+LT FY+ M +LIE+ +++L  PP
Sbjct: 478 ALGAGIGEDFNIKNLRYHKIIIMTDADVDGAHIATLILTLFYRYMPELIEEGYIYLAKPP 537

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+++++G  + Y + ++   +  ++ +        + R+KGLGEM   QL +T MD   R
Sbjct: 538 LYKVSRGKSTKYLYSDQELAEYKKKHEN-----FSLQRYKGLGEMNPRQLWDTTMDPENR 592

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            LLRVEI+ D     +  D   +LMG+ A  R +FI   A  +  + 
Sbjct: 593 VLLRVEIDDDF----EADDIFTRLMGSNASLRKEFIFNNAELVQTID 635


>gi|220927465|ref|YP_002504374.1| DNA gyrase subunit beta [Clostridium cellulolyticum H10]
 gi|219997793|gb|ACL74394.1| DNA gyrase, B subunit [Clostridium cellulolyticum H10]
          Length = 642

 Score =  617 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 251/656 (38%), Positives = 385/656 (58%), Gaps = 20/656 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            ++ + +  YD S I++LEGLE VR RPGMYIG T  + LHHL  E++ N++DE +AG  
Sbjct: 1   MSDINNNSIYDESQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVANSIDEALAGRC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           ++I+V +  +  +TV DNG GIPV  HPK     TLE++ T LHAGGKF +  Y +SGGL
Sbjct: 61  DIIKVIVHKDNSVTVTDNGSGIPVGIHPKM-GIPTLEVVHTILHAGGKFGSGAYSVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS+ + V V R+  I+ QK+SRG PL+ ++      ++ GT  TF+PDP+
Sbjct: 120 HGVGASVVNALSESMEVEVKREGHIYRQKYSRGKPLTSVDIVGDT-DETGTITTFKPDPE 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   +D   ++   +  A+L+  +      ++          ++  ++ GG+ ++++
Sbjct: 179 IFEEIV-YDFDAMISRYREMAFLNKGINIKLIDER-----PEESVEKNLHYEGGIISFVE 232

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +++  +  E+   +  +       VE A+ + +     + +Y N I T EGGTH +G
Sbjct: 233 YLNKSKEPLHDEVIYLEGSRDANI---VEVAMQYNDSYNESVFTYANNIATTEGGTHLTG 289

Query: 334 LRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R A+T+ +  YA      +    ++  +D+      +LSV + EP+F GQTKTKL + +
Sbjct: 290 FRAAITKVLNDYARKFNILKENDKNLSGEDVREGLTAVLSVKLPEPQFEGQTKTKLGNSE 349

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VEN + D    +L ++P  A  +L+  I  +  R   RK RE   RK+A+    LP
Sbjct: 350 IRTLVENVVSDKLFIFLEEHPAVAKIILDKSITAARAREAARKARELTRRKSAMDSSTLP 409

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS+     TE+FIVEGDSAGGSAKQ R+R  QA+LPL GK+LNV  +  +K+ +N
Sbjct: 410 GKLADCSEKDPTKTEIFIVEGDSAGGSAKQGRDRKIQAILPLWGKMLNVEKSRMDKVYDN 469

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           +++  ++ ALG     ++    LRY+K+IIM DADVDG+HI  LLLTFF++ M  L+EQ 
Sbjct: 470 EKLSPVIIALGAGIGDEFDTSKLRYDKIIIMADADVDGSHIRMLLLTFFFRYMRPLVEQG 529

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK-KHGKGKIEISRFKGLGEMLASQLK 629
           H+++  PPLF++ +G +  YA+D+    KI +E   +     + I RFKGLGEM   QL 
Sbjct: 530 HVYIAMPPLFKVYKGKEEYYAYDDIELDKIFKERGWRKDDPNVNIQRFKGLGEMNPDQLW 589

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           ET M+   RT+++V    DL       +   K MG K + R ++IQ  A  + ++ 
Sbjct: 590 ETTMNPETRTIIKV----DLEDAISADEVFCKFMGDKVEPRREYIQMHARDVSNLD 641


>gi|260575737|ref|ZP_05843734.1| DNA topoisomerase IV, B subunit [Rhodobacter sp. SW2]
 gi|259022135|gb|EEW25434.1| DNA topoisomerase IV, B subunit [Rhodobacter sp. SW2]
          Length = 653

 Score =  617 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 342/653 (52%), Positives = 450/653 (68%), Gaps = 10/653 (1%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
           +   AS+ Y ASSI +LEGLEPVR RPGMYIGGTDE+ALHHL +EV+DNAMDE +AG+A+
Sbjct: 7   SGDHASNAYMASSIEVLEGLEPVRKRPGMYIGGTDERALHHLVAEVLDNAMDEAVAGHAS 66

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            IEV L  +  LTV DNGRGIPV+ HPKFP KS LE+I  TLH+GGKF    YE SGGLH
Sbjct: 67  RIEVELHADYALTVRDNGRGIPVDPHPKFPGKSALEVIFCTLHSGGKFSGKAYETSGGLH 126

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALSD + V VAR   +++Q FSRGIP  PL+K     N+RGT +TF PD  I
Sbjct: 127 GVGASVVNALSDVMRVEVARNKELYAQSFSRGIPQGPLQKIGPAPNRRGTSVTFHPDADI 186

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           FG       ARLLKM +SKAYL   V+  W   K        P++  F+FPGGL  YL  
Sbjct: 187 FGSLH-LKPARLLKMARSKAYLFSGVEIRW---KSAVSDGETPQEAVFHFPGGLSDYLGE 242

Query: 276 KLENRSLISSEIFTGKTE--KKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHES 332
           +L   +  +   F GK     K    G+VEWAI W    +  + SYCNT+ T EGGTHE+
Sbjct: 243 QLAKTTTYADRPFAGKVSFPDKFNVPGSVEWAINWTPARDGFLQSYCNTVPTPEGGTHET 302

Query: 333 GLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           G   A+ +GI+ Y +L +N++A  I  DD++     ++SVFIREP+F GQTK +L + +A
Sbjct: 303 GFWSAILKGIRAYGDLVKNRKAELISRDDMLTGGCALISVFIREPQFVGQTKDRLSTEEA 362

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
            R VE A+RD FD++L  +   A  +L++++ R+EERL+RR+++E  RKTA +KLRLPGK
Sbjct: 363 ARYVELAVRDHFDNWLASDTKSAGAILDFLVLRAEERLKRRQEKETARKTATKKLRLPGK 422

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L DCS     GTELFIVEGDSAGGSAK AR R  QA++PL+GKILNV  A S K+  N +
Sbjct: 423 LTDCSSKTREGTELFIVEGDSAGGSAKGARERETQAIMPLKGKILNVLGAASSKLNENSE 482

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I D+ +ALG +  ++++ +DLRY+K+IIMTDADVDGAHIASLL+TFF+ +M  LI++ HL
Sbjct: 483 IRDICEALGVQMGTRFKVDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDRGHL 542

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           +L  PPL+R+TQG K +Y  D+  K++ L +    GKGKI++ RFKGLGEM A  LK+T 
Sbjct: 543 YLACPPLYRLTQGAKRMYVSDDAEKEEWLAK-GLGGKGKIDVQRFKGLGEMDAKDLKDTT 601

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           M+   R L+RV I++D     +T D + +LMG K + RF++IQE A F++++ 
Sbjct: 602 MNPETRKLIRVSIDEDE--PGETSDLVERLMGKKPELRFQYIQENARFVEELD 652


>gi|42525521|ref|NP_970619.1| DNA gyrase, B subunit [Treponema denticola ATCC 35405]
 gi|4033400|sp|O87545|GYRB_TREDE RecName: Full=DNA gyrase subunit B
 gi|3676691|gb|AAC62070.1| DNA gyrase subunit B [Treponema denticola]
 gi|41815532|gb|AAS10500.1| DNA gyrase, B subunit [Treponema denticola ATCC 35405]
 gi|325475358|gb|EGC78543.1| DNA gyrase subunit B [Treponema denticola F0402]
          Length = 638

 Score =  617 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 242/653 (37%), Positives = 365/653 (55%), Gaps = 24/653 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
              NY A++I +L+GLE VR RPGMYIG T    LHHL  EV+DN +DE +AG+ + I V
Sbjct: 2   TKSNYSANNITVLKGLEAVRKRPGMYIGSTGPDGLHHLVYEVVDNCIDEAMAGFCDKILV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L+ N  + V DNGRGIPV+ HP     S LE++LT LHAGGKFD  +Y++SGGLHGVG+
Sbjct: 62  VLEPNDIVRVEDNGRGIPVDIHP-TEKISALELVLTRLHAGGKFDKGSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS  +   V +       KF +G  L P++K  +     GT I +  DP IF + 
Sbjct: 121 SVVNALSVWMEAKVYKDGFEHYAKFEKGSILEPVKKIGETEK-SGTVIRWAVDPSIFTET 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             ++   L    +  A+L+ ++      ++        P++  F F GG+  ++    E+
Sbjct: 180 TVYNFEVLATRLRELAFLNSKISITMRDER-----LSTPKEVTFAFEGGISQFVSYLNES 234

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           + +        + EK        E AI + +     + S+ N I T EGGTH  G + AL
Sbjct: 235 KQVFPKSPVFIEGEKNDIL---CEVAIQYNDGYNENLLSFVNDINTREGGTHLEGFKTAL 291

Query: 339 TRGIKKYAEL-----TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
           TR +  + +       +  +   +  +D+      I+SV + EP+F GQTKTKL + D +
Sbjct: 292 TRVMNDFLKKYPKLVKKMDKEEKLTGEDVRAGLTAIVSVKVPEPQFEGQTKTKLGNSDVR 351

Query: 394 RTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
             V++ + +    +  QNP E  K+L + V E +     RR +    RK+ +    LPGK
Sbjct: 352 GIVDSFVNEKLTLFFEQNPNEVEKVLEKCVAEAAARIAARRAKEATRRKSGLDSFGLPGK 411

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS       E++IVEGDSAGGSAK+ R+   QA+LPL GK+LNV     +K+ NN++
Sbjct: 412 LADCSLKDPESCEVYIVEGDSAGGSAKKGRDSKTQAILPLWGKMLNVEKTRLDKVVNNEK 471

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           +  ++  LG      +  E LRY KVIIM DADVDG+HI +LLLTFF++ M  +IE+ H+
Sbjct: 472 LQPIIATLGTGIGKDFNIEKLRYHKVIIMADADVDGSHIRTLLLTFFFRYMPQVIEKGHV 531

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           +L  PPL++I+   K  Y ++++ +  +L++  +       + R+KGLGEM  +QL ET 
Sbjct: 532 YLAMPPLYKISHNKKEWYVYNDDERDSVLDQIGRGNNAA--VQRYKGLGEMDGTQLWETT 589

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           MD  +R ++RV +   +    +     + LMG + + R KFI+E A +  ++ 
Sbjct: 590 MDPARRKMMRVTLPDAV----EADRIFSTLMGEEVEPRRKFIEENAVYA-NLD 637


>gi|262039519|ref|ZP_06012821.1| DNA gyrase, B subunit [Leptotrichia goodfellowii F0264]
 gi|261746500|gb|EEY34037.1| DNA gyrase, B subunit [Leptotrichia goodfellowii F0264]
          Length = 660

 Score =  617 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 261/670 (38%), Positives = 376/670 (56%), Gaps = 37/670 (5%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++NY A +I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AG  + I V 
Sbjct: 2   ANNYGAENIKVLEGLEAVRKRPGMYIGSTSSRGLHHLVWEIVDNSVDEALAGVCDNIIVK 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  + V DNGRGIP   H     KSTLE+++T LHAGGKFDN  Y++SGGLHGVG+S
Sbjct: 62  ILKDNVIEVSDNGRGIPFATHE--TGKSTLEVVMTVLHAGGKFDNDNYKVSGGLHGVGVS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDK 219
           VVNALS+ L VTV R   I  Q + RG P+S +EK  +      GT   F+ DP+IF   
Sbjct: 120 VVNALSEWLEVTVTRDGQIVRQTYKRGEPVSDVEKIGEASPEAHGTTTKFKADPEIFETT 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             ++ + L    +  AYL+  +      +++  +     ++E+F F GG+  +L    + 
Sbjct: 180 V-YEFSVLESRLKELAYLNKGLTITLIDERDQEKI----KEEKFLFEGGIIDFLNEIADE 234

Query: 280 RSLISSEIFTGKTEKKGTHRG--------------------TVEWAIAW-CEENPEITSY 318
             +    I+   T +    +                      VE A+++   +   + S+
Sbjct: 235 EKITDEVIYMSDTYEVEAAKEVEIVDDNGNTVKKMRAAKFVEVEIAMSYTISQRENVYSF 294

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I T EGGTH SG R ALTR I   A+       +  +    D+    V ++SV I E
Sbjct: 295 VNNINTHEGGTHVSGFRTALTRTINDIAKQMNIVKDKDGTFQGTDVREGLVCVISVKIPE 354

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F GQTKTKL + +    V N + +    YL  +P EA K++E +      R   +K R
Sbjct: 355 PQFEGQTKTKLGNSEVTGIVSNIVGNNLKFYLEDHPKEAEKIIEKMTMSKRAREAAKKAR 414

Query: 437 EVN-RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E+  RK  +    LPGKLADCS      +E+FIVEG+SAGGSAKQ R+R  QA+LPLRGK
Sbjct: 415 ELVLRKNTLEVGSLPGKLADCSSKDPSESEIFIVEGNSAGGSAKQGRDRRFQAILPLRGK 474

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLL 555
           ILNV  +G  K+  N +I  ++ A G         E LRY K+IIMTDADVDGAHI +L+
Sbjct: 475 ILNVEKSGMHKLLENAEIRAMITAFGAGFGDDMDLEKLRYHKIIIMTDADVDGAHIRTLM 534

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615
           LTFFY+++ +LI + ++++  PPL+++  G    YA+ +E  +KI    ++  +    I 
Sbjct: 535 LTFFYRQLRELINEGYIYIAQPPLYKVQAGKAIKYAYSDEQMKKITSVLERDNRR-YTIQ 593

Query: 616 RFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675
           R+KGLGEM   QL ET +D   RTLL+V +              N LMG K + R +FI+
Sbjct: 594 RYKGLGEMNPEQLWETTLDPEVRTLLKVTMED----ASYADKMFNILMGDKVEPRRQFIE 649

Query: 676 ERASFIDDVG 685
           E A+++ ++ 
Sbjct: 650 ENANYVRNLD 659


>gi|291543406|emb|CBL16515.1| DNA gyrase subunit B [Ruminococcus sp. 18P13]
          Length = 649

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 249/660 (37%), Positives = 374/660 (56%), Gaps = 19/660 (2%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           S     +  +  YD S I++LEGLE VR RPGMYIG T    LHHL  E++DN++DE +A
Sbjct: 2   SETEQIKPGAQQYDESQIQVLEGLEAVRKRPGMYIGTTGSGGLHHLVYEIVDNSIDEALA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           GY   I+V +     + V DNGRGIP   HPK    S   ++ T LHAGGKF    Y+++
Sbjct: 62  GYCTHIQVEILPGDIIRVTDNGRGIPTGIHPK-EGISAATVVYTVLHAGGKFGGGGYKVA 120

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG SVVNALS+ L +TV   + +  Q+F RG    PL+         GT + F+P
Sbjct: 121 GGLHGVGASVVNALSEWLELTVKDGSHVHFQRFERGNYAEPLKIIGDTTEH-GTSVMFKP 179

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           D +IF +   FD   LLK  + +A+L+  +    S  ++ A     P+ E+  + GG++ 
Sbjct: 180 DAEIFEETTVFDYEVLLKRMREQAFLNAGLTIELSDQRDPA----NPQGEKMCYEGGIRQ 235

Query: 272 YLQTKLENR--SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           +++   + R    +S ++      K       VE A+ + +     I S+ N + T +GG
Sbjct: 236 FIEHIHKTRGLESLSEQVIYFTGSKGDN---AVEIAMQYNDSYNELILSFANNVHTIDGG 292

Query: 329 THESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
            HE G R ALT+ + +Y +     K    ++ +D+      I+SV + + +F  QTK KL
Sbjct: 293 MHELGFRNALTKTLNEYGKRFGLLKDDSKLMGEDVREGLTAIISVKLTDCQFESQTKVKL 352

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRK 446
            + + +  VE+ + +   +YL +NP  A  + +  +     R   +K RE   RKTA+  
Sbjct: 353 GNPEIKPFVESIVSEKLMNYLEENPAVARAIFDKSLAAQRAREAAKKARETARRKTAMES 412

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADCS+     TE++IVEGDSAGGSAK+ R+R  QA+LPL GK+LNV  A  +K
Sbjct: 413 ASLPGKLADCSERDIEMTEIYIVEGDSAGGSAKEGRDRRYQAILPLWGKMLNVEKARIDK 472

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           +  N+++M +V ALG      +    LRY KVIIM DADVDG+HI +LLLTFF++ M  L
Sbjct: 473 VYCNEKLMPVVTALGTSIGEDFDISKLRYGKVIIMADADVDGSHIRTLLLTFFFRFMRPL 532

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLA 625
           I   ++++  PPLFR+ +G    YA  +E + K + +F       K+E+ R+KGLGEM A
Sbjct: 533 ITNGNIYIAQPPLFRVAKGKTFKYAFSDEERDKYIAQFNAESPNAKVEVQRYKGLGEMDA 592

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL +T M+ + RT+++VE+   +       ++ + LMG K   R +FI++ A +  ++ 
Sbjct: 593 HQLWDTTMNPDTRTMIKVEMADAVK----ADETFSILMGDKVAPRREFIEKNAKYAQNLD 648


>gi|126660369|ref|ZP_01731481.1| DNA topoisomerase IV subunit B [Cyanothece sp. CCY0110]
 gi|126618342|gb|EAZ89099.1| DNA topoisomerase IV subunit B [Cyanothece sp. CCY0110]
          Length = 642

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 251/653 (38%), Positives = 375/653 (57%), Gaps = 19/653 (2%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +   NY A  I++LEGLEPVR RPGMYIG T  + LHHL  EV+DN++DE +AGY   IE
Sbjct: 2   TTKSNYGAEQIQVLEGLEPVRKRPGMYIGTTGPRGLHHLVYEVVDNSIDEALAGYCTHIE 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           + ++ +G +TV D+GRGIP + HP    KS LE ++T LHAGGKF    Y++SGGLHGVG
Sbjct: 62  IDINPDGSVTVTDDGRGIPTDVHP-STGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+ + V V R + + +Q++ RG+P++ LE K    +  GT I+F PD  IF  
Sbjct: 121 VSVVNALSEWVIVKVWRDDQVHTQRYERGVPITSLETKADKDHSTGTSISFLPDKTIFTV 180

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              FD + L    +  AYL+  VK  ++ +++       P  E + + GG+K Y+     
Sbjct: 181 GTEFDYSTLAGRLRELAYLNAGVKITFTDNRK-----EEPHIESYCYEGGIKEYVTYMCR 235

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
           ++  +  +I     EK GT +  V         +  +  + N I T +GGTH  GL+  L
Sbjct: 236 DKDPLHQDIIFVSGEKNGT-QVEVALLWCVDAYSDNLLGFANNIRTIDGGTHLEGLKTVL 294

Query: 339 TRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +   A      +    ++  +++     G++SV + EPEF GQTKTKL + + +  V
Sbjct: 295 TRTMNNVARKRNKLKDNDSNLGGENVREGLTGVISVKVPEPEFEGQTKTKLGNTEVRGIV 354

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
           ++ + +    YL  NP  A  ++E  ++  +     R+ RE V RK+ +    LPGKLAD
Sbjct: 355 DSLVGEVLSEYLEFNPHVADSIIEKAVQAFKAAEAARRARELVRRKSVLESSPLPGKLAD 414

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS      +E+F+VEGDSAGGSAKQ R+R  QA+LPLRGKI+N+      +I  N +I  
Sbjct: 415 CSTRDPEESEIFLVEGDSAGGSAKQGRDRRFQAILPLRGKIINIEKTDDARIYKNNEIQS 474

Query: 516 LVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALG   + +  +   LRY +++IMTDADVDGAHI +LLLTFFY+    L++Q ++++
Sbjct: 475 LITALGLGIKGEEFDSSQLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQRSLVDQGYVYI 534

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL+++ +G   VY ++E   Q+ +     +      I RFKGLGEM+ +QL +T M+
Sbjct: 535 ACPPLYKVERGRNHVYCYNERQLQEHINSLPANAN--YSIQRFKGLGEMMPTQLWDTTMN 592

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685
              R + +VEI        +       LMG +   R +FI+     +D  D+ 
Sbjct: 593 PETRRMKQVEIED----AAEADRIFTILMGDRVAPRREFIETYGPKLDLNDLD 641


>gi|329925092|ref|ZP_08280036.1| DNA gyrase, B subunit [Paenibacillus sp. HGF5]
 gi|328940211|gb|EGG36543.1| DNA gyrase, B subunit [Paenibacillus sp. HGF5]
          Length = 634

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 266/647 (41%), Positives = 379/647 (58%), Gaps = 22/647 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            YD + I++LEGLE VR RPGMYIG T  K LHHL  EV+DN++DE +AG  + IE+ + 
Sbjct: 5   TYDENQIQVLEGLEAVRKRPGMYIGSTSAKGLHHLVWEVVDNSIDEAMAGICDHIEIIVH 64

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV+DNGRGIPV  + K   KSTLE+++T LHAGGKF    Y++SGGLHGVG+SVV
Sbjct: 65  EDNSITVIDNGRGIPVGENAKL-KKSTLEVVMTVLHAGGKFGGGGYKVSGGLHGVGVSVV 123

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS ++ V V R   I+ Q++ RG+P   ++      +  GT +TF PDP+IF +   +
Sbjct: 124 NALSSKVVVQVKRDGNIYQQEYHRGVPQYDIKIIGDSDDH-GTTVTFLPDPEIFTETTVY 182

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   LL   +  A+L+  +    + ++           + F + GG+  Y++   E +  
Sbjct: 183 DYTTLLTRIRELAFLNKGIALTLTDER-------TGASDYFKYEGGIIEYVKFLNEKKEA 235

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +  +    +  +       VE ++ + +     I S+ N I T EGGTHESG + ALTR 
Sbjct: 236 LHEDPIYVEGSRDNIQ---VEVSLQYNDSYTENIYSFANNINTHEGGTHESGFKSALTRI 292

Query: 342 IKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  YA  T   +  +     DD+      I+SV + EP+F GQTKTKL + + +  VE+ 
Sbjct: 293 INDYARKTGLIKDNNNNLSGDDVREGLTAIISVKVPEPQFEGQTKTKLGNSEVRGIVESL 352

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458
             +    +L +NP  + ++LE  ++ S  R   RK R    RK+A+    LPGKLADCS 
Sbjct: 353 FAEKLQEFLQENPAVSRRILEKALQASRAREAARKAREMTRRKSALEVSALPGKLADCSS 412

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
             A  +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  ++I +N +I  ++ 
Sbjct: 413 KDASISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDRILSNAEIRAIIT 472

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG      +     RY K+IIMTDADVDGAHI +LLLTFFY+ M  L+E  ++++  PP
Sbjct: 473 ALGTGIAEDFDLSKARYHKIIIMTDADVDGAHIRTLLLTFFYRYMRKLVEAGYIYIAQPP 532

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           LF+I +     YA  E  + +I++EF ++   KI + R+KGLGEM A QL ET MD   R
Sbjct: 533 LFKIERNKVIRYAGSERERDEIIKEFGEN--VKINVQRYKGLGEMNAGQLWETTMDPESR 590

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T+L+V I   +          + LMG   + R  FIQE A  + ++ 
Sbjct: 591 TMLQVTIEDAI----LADTLFDTLMGDNVEPRRDFIQEHAKSVRNLD 633


>gi|229496104|ref|ZP_04389826.1| DNA gyrase, B subunit [Porphyromonas endodontalis ATCC 35406]
 gi|229317000|gb|EEN82911.1| DNA gyrase, B subunit [Porphyromonas endodontalis ATCC 35406]
          Length = 653

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 245/664 (36%), Positives = 389/664 (58%), Gaps = 21/664 (3%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           S      +    Y A SI++LEGLE VR RP MYIG   EK LHHL  EV+DN++DE +A
Sbjct: 2   SDENNKSTEQQEYSAGSIQVLEGLEAVRKRPAMYIGDISEKGLHHLVYEVVDNSIDEALA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           GY   ++V++  +  ++V DNGRGIPV+ HPK   +S LE+++T LHAGGKFD  +Y++S
Sbjct: 62  GYCTDVKVTILEDNSISVEDNGRGIPVDIHPK-EGRSALEVVMTVLHAGGKFDKGSYKVS 120

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+S VNALS  L   V R    F Q+FS+G PL  ++++ +  ++ GT +TF P
Sbjct: 121 GGLHGVGVSCVNALSTHLRADVYRDGKHFVQEFSKGKPLYSVKEEGE-SDRTGTTVTFTP 179

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           D  IF     +    L    +  A+L+  ++   +  +E  E+   P  E FY   GLK 
Sbjct: 180 DNSIFTVSI-YQFKILAHRLRELAFLNAGLRLSLTDLRERDEEG-NPLTEVFYSEDGLKE 237

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++   +++  +  ++      K       +E A+ + ++    + SY N I T EGGTH
Sbjct: 238 FVRFIDQSKVNLLDDVIHI---KNDKGEVPIEVAMTYNQDYQENVYSYVNDINTIEGGTH 294

Query: 331 ESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +K+YA  ++   K  +++  DD       ++S+ + EP+F GQTKTKL 
Sbjct: 295 LTGFRRALTRTLKQYATDSKMLEKVKVNVEGDDFREGLTAVISIKVAEPQFEGQTKTKLG 354

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKL 447
           + +    VE+A+ +    YL ++P +A  +++ V+  ++ R      R++  + + +   
Sbjct: 355 NSEVIGIVESAVSEALAIYLEEHPQQAKAIVDKVVLAAQARHAAANARKLVLRKSPLAAG 414

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKL+DC+       E+F+VEGDSAGG+AKQ R+R  QA+LPLRGKILNV  A   K+
Sbjct: 415 GLPGKLSDCTSKDPAKCEIFLVEGDSAGGTAKQGRDRMYQAILPLRGKILNVEKAMQHKV 474

Query: 508 RNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
            ++Q+I ++  ALG    ++   +      LRY K+IIMTDADVDG+HIA+L+LTFF++ 
Sbjct: 475 LDSQEIRNIYTALGVTIGTEEDSKALNLSKLRYHKIIIMTDADVDGSHIATLILTFFFRN 534

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
           M  LI+  +++L +PPL+   +G +  Y   E+ ++  ++++    + ++ + R+KGLGE
Sbjct: 535 MRSLIDNGYVYLATPPLYLCRKGKEQAYCWTEQQRRAFIDKYADGNESRVHVQRYKGLGE 594

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           M+  QL ET M+ + R L ++ I     S      + + LMG     R +FI++ A++  
Sbjct: 595 MMEEQLWETTMNPDNRILKQITIE----SAASADRTFSMLMGEDVPPRREFIEDNATYAR 650

Query: 683 DVGT 686
            +  
Sbjct: 651 -IDA 653


>gi|171920695|ref|ZP_02931917.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|185178763|ref|ZP_02554678.2| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188024457|ref|ZP_02570760.2| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188518714|ref|ZP_02557214.2| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|188524147|ref|ZP_02557455.2| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195867481|ref|ZP_03079485.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|198273562|ref|ZP_03206098.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|209554430|ref|YP_002284500.1| DNA gyrase subunit B [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225550770|ref|ZP_03771719.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
 gi|225551162|ref|ZP_03772108.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|171903433|gb|EDT49722.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|184209375|gb|EDU06418.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188018752|gb|EDU56792.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188997713|gb|EDU66810.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|195660124|gb|EDX53504.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195660957|gb|EDX54210.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|198250082|gb|EDY74862.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|209541931|gb|ACI60160.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225378977|gb|EEH01342.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|225379924|gb|EEH02286.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
          Length = 650

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 249/666 (37%), Positives = 364/666 (54%), Gaps = 30/666 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
             + +  + Y A SI++LEGLE VR RPGMYIG T  + LHH+  E++DN++DE + G+A
Sbjct: 1   MNDSNKENKYTAESIKVLEGLEAVRKRPGMYIGSTQSEGLHHMIWEIVDNSIDEAMGGFA 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
            +++V +  +G + V D+GRGIPV  H K    S +E +LT LHAGGKFDN +Y++SGGL
Sbjct: 61  TVVKVIIKKDGVIRVEDDGRGIPVGIHEK-TGLSGVETVLTVLHAGGKFDNDSYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR--GTRITFRPD 212
           HGVG SVVNALS    V V +       +F  G       K    ++ +  GT I F PD
Sbjct: 120 HGVGASVVNALSKNFKVWVNKNYVQHYVEFINGGHAIEPLKIINDKDIKEKGTTIEFIPD 179

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            +I  +    +   +    +  AYL+  V   +       E      KE++++ GGLK Y
Sbjct: 180 FEIMEENEWDELKIMA-RLKQLAYLNKGVNIEF-------ESEMTNRKEKWHYEGGLKEY 231

Query: 273 LQTKLENRSLISSEIFTGKTEK--------KGTHRGTVEWAIAWCEENPEITS-YCNTIL 323
           +      +  +   I  G+ EK          T+    E A  +       T  +CN I 
Sbjct: 232 IADLNAEKEPLFDAIVYGEEEKEVKVPGHNDQTYNIKCEVAFQYNNSYNNSTHSFCNNIN 291

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G ++A+TR + KYA   +  +     I  +D+      I+S+    P++ G
Sbjct: 292 TTEGGTHEEGFKLAITRLLNKYAIDKKYLKDTDDKITKEDVSEGLTAIISIKHPNPQYEG 351

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK KL + + +  V       F+ +L +NP E+ K++  V++ +E R R  + RE  R+
Sbjct: 352 QTKKKLGNSEVRPYVNEITSIIFEKFLNENPEESKKIVAKVMQAAEARRRSHEAREATRR 411

Query: 442 TA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
            +      LPGKLADCS   +  TE++IVEGDSAGGSAK  R R  QA+LPLRGKI+NV 
Sbjct: 412 KSPFESNSLPGKLADCSNRDSSVTEIYIVEGDSAGGSAKTGREREFQAILPLRGKIINVE 471

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
            A  +KI  N++I +++ A G     ++  E LRY K+IIMTDADVDG+HI  LLLTFFY
Sbjct: 472 KAKIDKIFANEEIQNMITAFGAGIGPEFNIEKLRYSKIIIMTDADVDGSHIRILLLTFFY 531

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           + M  LI+  ++++  PPL++++ G    YA+ ++  +KI          K  I R+KGL
Sbjct: 532 RYMLPLIQNGNVYIAQPPLYKVSYGKTIKYAYSDQELEKIKSTLLNT---KYNIQRYKGL 588

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GEM   QL ET MD   R LL+V I            + + LMG     R +FI++ A +
Sbjct: 589 GEMNPDQLWETTMDPKNRLLLKVNIED----AAIADKTFSLLMGDDVTPRKEFIEKNAKY 644

Query: 681 IDDVGT 686
           + ++  
Sbjct: 645 VKNIDA 650


>gi|186686392|ref|YP_001869588.1| DNA gyrase subunit B [Nostoc punctiforme PCC 73102]
 gi|186468844|gb|ACC84645.1| DNA gyrase, B subunit [Nostoc punctiforme PCC 73102]
          Length = 645

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 252/651 (38%), Positives = 369/651 (56%), Gaps = 14/651 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +Y A  I++LEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AG+   IEV 
Sbjct: 2   TSSYSADQIQVLEGLEAVRKRPGMYIGTTGPRGLHHLVYEVVDNSIDEALAGHCTHIEVD 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +G +TV D+GRGIPV+ H +   KS LE ++T LHAGGKF    Y++SGGLHGVGIS
Sbjct: 62  INADGSVTVTDDGRGIPVDTHSR-TGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGIS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ + VTV R   +  Q++ RGIP++ L+ K     + GT +TF+PD +IF    
Sbjct: 121 VVNALSEVVEVTVWRDKKVHLQRYERGIPVTELQTKPYKEARTGTSVTFKPDTQIFTTSI 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   L    +  AYL+  VK  ++ ++    K   P+ E + + GG+K Y+      +
Sbjct: 181 EFDYITLSGRLRELAYLNAGVKITFTDNRLELLKSDTPKVESYNYKGGIKEYIAYMNREK 240

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
             +  EI   + E+    +  V            +  + N I T +GGTH  GL+  LTR
Sbjct: 241 QPLHEEIIYVQGERNNV-QVEVSLQWCTDAYTDNVLGFANNIRTVDGGTHLEGLKAVLTR 299

Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +   A      +    ++  + +      ++SV + +PEF GQTKTKL + + +  V++
Sbjct: 300 TLNAIARKRNKIKENEPNLSGEHVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDS 359

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            + +    YL  +P  A  +L+  I+  +     R  RE V RK+ +    LPGKLADCS
Sbjct: 360 LVGEVLTEYLEFHPAIADSILDKAIQAFKAAEAARHARELVRRKSVLESSPLPGKLADCS 419

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +E+FIVEGDSAGGSAKQ R+R  QA+LPLRGKILN+      KI  N ++  L+
Sbjct: 420 SRDPSESEIFIVEGDSAGGSAKQGRDRRTQAILPLRGKILNIEKTDDAKIYKNNEVQSLI 479

Query: 518 QALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
            ALG   +    + + LRY +++IMTDADVDGAHI +LLLTFFY+    LIEQ  +++  
Sbjct: 480 TALGLGVKGDEFDSNQLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQRSLIEQGFIYIAC 539

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF++ +G    Y + +  K + + +F  +      I RFKGLGEM+  QL +T M+  
Sbjct: 540 PPLFKVERGRNHEYCYSDREKNQAIAKFPANAN--YTIQRFKGLGEMMPQQLWDTTMNPE 597

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685
            R + +VEI        +       LMG +   R +FI+   S ++  D+ 
Sbjct: 598 TRKMKQVEIED----AAEADRIFTILMGDRVAPRREFIETYGSKLNFTDLD 644


>gi|315659991|ref|ZP_07912849.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
           lugdunensis M23590]
 gi|315494892|gb|EFU83229.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
           lugdunensis M23590]
          Length = 644

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 256/657 (38%), Positives = 387/657 (58%), Gaps = 20/657 (3%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
              ++ + +DNY A  I++LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AG
Sbjct: 3   TTLSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 62

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           YA+ IEV ++ + ++ V DNGRGIPV+   K   +  +E+ILT LHAGGKF    Y++SG
Sbjct: 63  YADQIEVIIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 121

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG SVVNALS++L V V R  TI+ Q + +G+P   L++  +  +K GT I F+ D
Sbjct: 122 GLHGVGSSVVNALSEDLEVYVHRNETIYHQAYKKGVPQFDLKEVGET-DKTGTVIRFKAD 180

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            +IF +   +D   L K  +  A+L+  +      +++  E+     ++ +++ GG+K+Y
Sbjct: 181 SEIFTETTVYDYDTLQKRIRELAFLNKGISITLKDERDDEEQ----REDTYHYEGGIKSY 236

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++   EN+  I  E       K       +E AI +       + SY N I T EGGTHE
Sbjct: 237 VELMNENKEPIHEEPIYIHQMKDDI---EIEIAIQYNSGYATNLLSYANNIHTYEGGTHE 293

Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G + ALTR +  Y   ++  +        +D       ++S+   +P+F GQTKTKL +
Sbjct: 294 DGFKRALTRVLNSYGTKSKIIKEDKDRLSGEDTREGLTAVVSIKHGDPQFEGQTKTKLGN 353

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLR 448
            + ++ V+    + F+ +L +NP  A  ++E  I  S  R+  +K REV R+ + +    
Sbjct: 354 SEVRQVVDKLFSEYFERFLYENPNVARIIVEKGIMASRARVAAKKAREVTRRKSHLEISS 413

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS      +E+FIVEGDSAGGS K+ R+   QA+LPLRGKILNV  +  ++I 
Sbjct: 414 LPGKLADCSSKNPDESEIFIVEGDSAGGSTKEGRDSRTQAILPLRGKILNVEKSRLDRIL 473

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           NN +I  ++ A G     ++     RY K++IMTDADVDGAHI +LLLTFFY+ M  LIE
Sbjct: 474 NNNEIRQMITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 533

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             ++++  PPLF++TQG +  Y  +++   K+  E       K +ISR+KGLGEM A QL
Sbjct: 534 AGYVYIAQPPLFKLTQGKQKYYVFNDKELDKLKSELSPT--PKWQISRYKGLGEMNADQL 591

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            ET M+ + R +L+V ++  +    +   +   LMG   + R +FI++ A +   + 
Sbjct: 592 WETTMNPDNRMMLQVRLDDAI----EADKTFEMLMGDVVENRRQFIEDNAVYAT-LD 643


>gi|260591755|ref|ZP_05857213.1| DNA gyrase, B subunit [Prevotella veroralis F0319]
 gi|260536039|gb|EEX18656.1| DNA gyrase, B subunit [Prevotella veroralis F0319]
          Length = 657

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 261/668 (39%), Positives = 382/668 (57%), Gaps = 28/668 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
             NQ   +NY AS+I++LEGLE VR RP MYIG   EK LHHL +E +DN++DE +AGY 
Sbjct: 2   AENQENENNYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLINETVDNSIDEAMAGYC 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             IEV+++ +  +TV D+GRGIPV+ H K    S LE+++T LHAGGKFD  +Y++SGGL
Sbjct: 62  QNIEVTINEDNSITVEDDGRGIPVDEHKKLHK-SALEVVMTVLHAGGKFDKGSYKVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+S VNALS  +   V R   I+ Q++ +G PL P++   + +   GTR  F PDP 
Sbjct: 121 HGVGVSCVNALSTHMMSQVYRDGKIYQQEYEKGKPLYPVKVVGETQK-TGTRQQFWPDPT 179

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     +    + +  +  AYL+  +K   +  +   E       E F+   GLK +++
Sbjct: 180 IFTTTV-YQWDIVARRMRELAYLNAGIKITLTDLRPDPETGKT-RTEVFHAKDGLKEFVR 237

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               +R  +  ++   KTEK+      +E A+ +  +    I SY N I T EGGTH  G
Sbjct: 238 YVDRHRQHLFDDVIYLKTEKQNIP---IEVAVMYNTDYTENIHSYVNNINTIEGGTHLQG 294

Query: 334 LRVALTRGIKKYAEL------TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
            R ALTR +K YA+          K  I I  +D       ++++ + EP+F GQTKTKL
Sbjct: 295 FRAALTRTLKSYADNDPQISKQIEKAKIEIAGEDFREGLTAVIAIKVAEPQFEGQTKTKL 354

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRK 446
            + +    V+ A+ +    YL ++P EA  +   VI  +  R+  RK RE   RK  +  
Sbjct: 355 GNSEVAGAVQQAVGEALSDYLEEHPNEAKMICNKVILAATARVAARKARESVQRKNVMSG 414

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADCS       E+F+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV      +
Sbjct: 415 GGLPGKLADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQRHR 474

Query: 507 IRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           +   + +M+++Q++G R         +   + LRY+K+IIMTDADVDG+HI +L++T FY
Sbjct: 475 VFEAESVMNIIQSIGVRFGVENEGDFEANTDKLRYDKIIIMTDADVDGSHIDTLIMTLFY 534

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI--SRFK 618
           + M  +IEQ HL++ +PPL++ T    S Y + E+ +Q  L+++    +    I   R+K
Sbjct: 535 RYMPKVIEQGHLYIATPPLYKCTYKKVSEYCYTEQQRQAFLDKYGNGVEDGKTIHTQRYK 594

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           GLGEM   QL ET MD   R L +V I     +  D  +  + LMG   + R +FI++ A
Sbjct: 595 GLGEMNPEQLWETTMDPKTRLLKQVTIE----NAADADEIFSMLMGDDVEPRREFIEKNA 650

Query: 679 SFIDDVGT 686
           ++  ++  
Sbjct: 651 TYA-NIDA 657


>gi|160935172|ref|ZP_02082555.1| hypothetical protein CLOBOL_00067 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441903|gb|EDP19600.1| hypothetical protein CLOBOL_00067 [Clostridium bolteae ATCC
           BAA-613]
          Length = 657

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 268/663 (40%), Positives = 376/663 (56%), Gaps = 17/663 (2%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +   A    +++Y A+ I+ILEGLE VR RP MYIG T  + LHH+  E++DNA+DE +A
Sbjct: 2   NQTSALSPVTEDYGAAQIQILEGLEAVRKRPSMYIGSTSSQGLHHMVYEIVDNAVDEALA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+  LI+V L+ +G +TV DNGRGIP     K    S ++++ T LHAGGKFD+S Y++S
Sbjct: 62  GHCTLIQVYLNKDGSVTVRDNGRGIPAGIQTK-TGLSAIQVVFTVLHAGGKFDDSNYKVS 120

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR-GTRITFR 210
           GGLHGVG SVVNALS  LHV V +    ++Q + RGIP +P+++         GT +TF 
Sbjct: 121 GGLHGVGASVVNALSSHLHVQVDQDGFSYAQSYERGIPAAPVKQLGPCSQGTHGTTVTFM 180

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI----AEKYGIPEKEEFYFP 266
           PD  IF   A      L +  +  A+L+  ++      +      A          F F 
Sbjct: 181 PDQDIFPSIAWDR-NILEERLRETAFLTQGLEISLYDLRRDPAGEATCPVTAWSRTFCFQ 239

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTD 325
            GLK ++    ++   + + I +G+ E         E+A+       E   S+ N I T 
Sbjct: 240 NGLKDFVSWLEQDGEPLYTGIISGRHETDKVQ---AEFALVHNSSYSEQLLSFANNISTP 296

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQT 383
           EGGTH +G R AL+R +  YA   +  +        D+L      +LSV +++ +F GQT
Sbjct: 297 EGGTHVTGFRQALSRAVNDYARNAKLLKDTDSSLSRDELSEGLTAVLSVRLQDAQFEGQT 356

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKT 442
           K KL S   +  VE  +      +L QNP  A  + +  +   + R   R  RE+  RKT
Sbjct: 357 KQKLGSSHVRPVVEQMVYTRLTLFLEQNPAAAKAICDKAMLARKARTAARTAREMARRKT 416

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+  L LPGKLADCS       ELFIVEGDSAGGSAK AR+R NQAVLPLRGKILNV  A
Sbjct: 417 ALSGLSLPGKLADCSSKNPGECELFIVEGDSAGGSAKLARSRENQAVLPLRGKILNVEKA 476

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
             ++I  N +I  ++ A G      +  E+LRY K+I+MTDADVDGAHI +LLLTF ++ 
Sbjct: 477 SLDRISANAEIKAMISAFGTGILDTFSLENLRYNKIILMTDADVDGAHITTLLLTFLFRF 536

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
           M  LIE+ H+FL  PPL+R+ +G K  YA+ +   ++ +    + G    +I R+KGLGE
Sbjct: 537 MPKLIEEGHVFLAQPPLYRVEKGKKLWYAYSDSELEQTINAIGRDGT--YKIQRYKGLGE 594

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           M A QL ET MD ++RTLLR+ IN  +    +T  + + LMG + + R  FI E A +I 
Sbjct: 595 MDAGQLWETTMDPSRRTLLRITIND-MEMYHETCQTFSILMGDEVEPRKNFILEHAQYIS 653

Query: 683 DVG 685
            + 
Sbjct: 654 MLD 656


>gi|124021870|ref|YP_001016177.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9303]
 gi|123962156|gb|ABM76912.1| DNA gyrase, subunit B [Prochlorococcus marinus str. MIT 9303]
          Length = 655

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 255/656 (38%), Positives = 371/656 (56%), Gaps = 16/656 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
             +      Y A  I++LEGLEPVR RPGMYIG T  + LHHL  EV+DN++DE +AG+ 
Sbjct: 2   SEDSKVQAAYGAEQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVFEVVDNSVDEALAGHC 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I V L  +G  ++ DNGRGIP + H +   KS LE +LT LHAGGKF +  Y++SGGL
Sbjct: 62  DEILVVLGPDGSASIADNGRGIPTDVHSR-TGKSALETVLTVLHAGGKFGSGGYKVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS---PLEKKEKVRNKRGTRITFRP 211
           HGVG+SVVNALS+ + VTV RQ  +  Q+F RG  +       +    + + GT + F+P
Sbjct: 121 HGVGVSVVNALSEWVEVTVRRQGQVHRQRFERGTAIGSLRSEAQPASEKGRTGTSVCFKP 180

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA-EKYGIPEKEEFYFPGGLK 270
           D +IF     FD A L    +  AYL+G V+  +  +++   +  G P +E +++ GG+K
Sbjct: 181 DEEIFTVGIVFDYATLSARLRELAYLNGGVRIVFRDERQPVLDAEGAPHEEVYFYEGGIK 240

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330
            Y+      +  +  EI    +EK    +            +  I  + N I T +GGTH
Sbjct: 241 EYVTYMNAEKDALHPEIIYVNSEKDNV-QVEAALQWCVDAYSDSILGFANNIRTVDGGTH 299

Query: 331 ESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             GL+  LTR +  +A     ++    ++  +++      +LSV + +PEF GQTKTKL 
Sbjct: 300 IEGLKTVLTRTLNTFARKRGKRKEADSNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLG 359

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447
           + + +  V++ + +    YL  NP     +LE  I+        R+ RE V RK+ +   
Sbjct: 360 NTEVRGIVDSLVGEALSQYLEFNPAVIDLILEKAIQAFNAAEAARRARELVRRKSVLESS 419

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILN+      KI
Sbjct: 420 TLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKI 479

Query: 508 RNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
             N +I  L+ ALG   + +  +   LRY +V+IMTDADVDGAHI +L+LTFFY+   +L
Sbjct: 480 YKNTEIQALITALGLGIKGEEFDAKNLRYHRVVIMTDADVDGAHIRTLILTFFYRYQKEL 539

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           +E  ++++  PPL+++ +G    Y ++E   Q  L  F +  K    I RFKGLGEM+  
Sbjct: 540 VEGGYIYIACPPLYKVERGKNHTYCYNEADLQTTLSGFPE--KANYTIQRFKGLGEMMPK 597

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           QL ET MD + R + RVE+   L    +       LMG K   R +FI+  ++ +D
Sbjct: 598 QLWETTMDPSTRMMKRVEVQDAL----EADRIFTILMGDKVAPRREFIETHSAELD 649


>gi|326789144|ref|YP_004306965.1| DNA gyrase subunit beta [Clostridium lentocellum DSM 5427]
 gi|326539908|gb|ADZ81767.1| DNA gyrase, B subunit [Clostridium lentocellum DSM 5427]
          Length = 634

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 262/649 (40%), Positives = 378/649 (58%), Gaps = 21/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  YD + I+ILEGL+ VR RPGMYIG T  K LHHL  E++DNA+DE +AG+ + I+V+
Sbjct: 2   AATYDENQIQILEGLQAVRKRPGMYIGSTSSKGLHHLVYEIVDNAVDEALAGFCSFIKVT 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  ++V+DNGRGIPV  HP+    ST+E++ T LHAGGKF    Y++SGGLHGVG S
Sbjct: 62  IHADNTISVIDNGRGIPVGIHPQ-KGISTVEVVFTILHAGGKFGGGGYKVSGGLHGVGAS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ L V V     +  +KFSRG  + PL          GT + F+PD +IF +  
Sbjct: 121 VVNALSEWLTVEVYTDGKVHQEKFSRGDVVQPLTVIGDTNKV-GTYVRFKPDTEIFEEVI 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   L +  +  A+L+  +K     ++E  E+        F++ GG+K ++Q   +++
Sbjct: 180 -FDYKVLEQRLKETAFLTKALKIQLVDEREGQEQNKT-----FHYEGGIKEFVQHLNKHK 233

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + I  EIF  + EK G     VE A    +     + S+ N I T EGGTH SG R A+T
Sbjct: 234 TPIYDEIFYCEGEKDGI---AVEVAFQHNDSYVENLFSFVNNINTPEGGTHLSGFRTAIT 290

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           + +  YA      +    ++  DD+      ++S+ I +P+F GQTKTKL S +A   V+
Sbjct: 291 KNLNDYARKMGLLKDSDKNLTGDDIREGMTAVISIKIGDPQFEGQTKTKLGSSEAAGAVQ 350

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   D   ++L QNP     +++  V+        R+ +    RK+A+    LPGKLADC
Sbjct: 351 SVFGDQLTYFLEQNPNVGKVIVQKGVMAARARDAARKARELTRRKSALEGNALPGKLADC 410

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S+  A   E++IVEGDSAGGSAK AR+   QA+LPLRGKILNV     +K+  NQ+I ++
Sbjct: 411 SEKDASKCEIYIVEGDSAGGSAKSARSPKTQAILPLRGKILNVEKVRIDKMLENQEIRNM 470

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A G      +    LRY K+I+MTDADVDGAHI +LLLTF Y+   +LIEQ H+++  
Sbjct: 471 ITAFGAGISDDFDISKLRYGKIILMTDADVDGAHIRTLLLTFLYRYYRELIEQDHVYIAQ 530

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+ + +  K  YA D++  +K+LEE  + G  ++   R+KGLGEM A QL ET MD  
Sbjct: 531 PPLYLVEKNKKKHYAFDDKELEKLLEEVGRTGITRM--QRYKGLGEMNAEQLWETTMDPE 588

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            R L++V I+          +   KLMG   + R +FI E A  +  + 
Sbjct: 589 SRVLVKVNIDD----AAAADEIFTKLMGDDVEPRRQFINEHAHKVTYLD 633


>gi|78188013|ref|YP_378351.1| DNA gyrase, B subunit [Chlorobium chlorochromatii CaD3]
 gi|78170212|gb|ABB27308.1| DNA gyrase subunit B [Chlorobium chlorochromatii CaD3]
          Length = 637

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 259/649 (39%), Positives = 375/649 (57%), Gaps = 25/649 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y A++I++L+G+E VRMRP MYIG    + LHHL  E++DN++DE + G+ + I V+L+ 
Sbjct: 6   YGATNIQVLDGIEHVRMRPAMYIGDIHSRGLHHLVYEIVDNSIDETLGGFNDYIFVALNA 65

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G +TV+D+GRGIPV+ HP+   KS LE+++T + AGGKFD   Y++SGGLHGVG SVVN
Sbjct: 66  DGSITVIDHGRGIPVDMHPE-KQKSALELVMTVIGAGGKFDKGAYKVSGGLHGVGASVVN 124

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS+   V V R    + Q++ RG+P   ++      ++RGT+ TF PD  IF     F 
Sbjct: 125 ALSEWCEVEVYRDGKAYYQRYERGVPQGDVKVIGD-SDQRGTKTTFMPDGTIFKT-TEFR 182

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              ++   +  A+L+  ++                E+EEF+F GG+  +++   +NR  +
Sbjct: 183 KEIIIDRMRELAFLNKNLRIIVQD--------TNGEQEEFHFEGGICEFVRFTDQNRLNL 234

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
             E      E+ GT    VE A+ + +     + SY N I T EGGTH +G R ALTR +
Sbjct: 235 LREPIYLYGERDGT---VVEIALQYNDSYQENVFSYVNNINTHEGGTHVTGFRKALTRTL 291

Query: 343 KKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             YA+         +++  DD       ++SV + EP+F GQTKTKL + + Q  VE  +
Sbjct: 292 NSYAQKNDLLKNLKLTLTGDDFKEGLTAVISVKVAEPQFEGQTKTKLGNSETQSIVETVV 351

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQN 459
            D    +   NP     ++E V   +  R   RK +E   RK+ +    LPGKLADCS N
Sbjct: 352 NDQLAEFAESNPNTLKLIIEKVKGAAMSREAARKAKELTRRKSVLESSGLPGKLADCSIN 411

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
                EL+IVEGDSAGGSAKQ R+RS QA+LPL+GKILNV  A   K+  N++I  ++ A
Sbjct: 412 DPEHCELYIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKARLHKMLENEEIKTIILA 471

Query: 520 LGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           LG     +    E LRY K+IIMTDADVDGAHI +LLLTFF++ M  +IE   +++  PP
Sbjct: 472 LGTSFGDEEFAVEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRHMRPVIEAGRVYIAQPP 531

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK--IEISRFKGLGEMLASQLKETAMDAN 636
           L+ +  G    YA D++ +  I++  KK  K K  I I R+KGLGEM   QL  T MD  
Sbjct: 532 LYLVKSGKDQHYAWDDDERNSIVDNMKKMQKSKANIHIQRYKGLGEMNPEQLWSTTMDPA 591

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            R+LL V +   +    +     + LMG K + R +FI++ A ++  + 
Sbjct: 592 HRSLLLVSVENAM----EADQVFSTLMGDKVEPRREFIEKNARYVRRLD 636


>gi|157414241|ref|YP_001485107.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9215]
 gi|157388816|gb|ABV51521.1| DNA gyrase, subunit B [Prochlorococcus marinus str. MIT 9215]
          Length = 655

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 259/657 (39%), Positives = 379/657 (57%), Gaps = 15/657 (2%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           S    +   S++Y A  I++LEGLEPVR RPGMYIG T  + LHHL  EV+DN++DE +A
Sbjct: 2   SEDKRSNKISNDYGAEQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+ + IE+ L  +G   + DNGRGIP + HP+   KS LE +LT LHAGGKF +  Y++S
Sbjct: 62  GHCDHIEIVLRADGSALISDNGRGIPTDIHPR-TGKSALETVLTVLHAGGKFGSGGYKVS 120

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS--PLEKKEKVRNKRGTRITF 209
           GGLHGVGISVVNALS+ ++VTV R  + F+Q+F +G+       +K+    +K+GT I F
Sbjct: 121 GGLHGVGISVVNALSEWVNVTVYRDGSEFNQRFEKGLSKGELQTKKQIGKSSKKGTTICF 180

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +PD  IF     F+ A L    +  AYL+G VK  +  ++         E E + + GG+
Sbjct: 181 KPDKTIFSGGIEFEYALLSSRLRELAYLNGGVKIVFRDERNQLSDGSFKE-EIYLYQGGI 239

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGT 329
           K Y++     +  I  EI    ++++  +             +  I  + N I T +GGT
Sbjct: 240 KEYVEYMNAEKDSIHPEIIYVDSQRENVY-VEAALQWCSDVYSDNILGFANNIRTIDGGT 298

Query: 330 HESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  GL+  LTR     A+    ++ I  ++  +++      +LSV + +PEF GQTKTKL
Sbjct: 299 HIEGLKTVLTRTFNNLAKKRGKRKDIEKNLAGENIREGLTVVLSVKVPDPEFEGQTKTKL 358

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
            + + +  V++ + +    Y+  NP     +LE  I+        R+ RE V RK+ +  
Sbjct: 359 GNTEVRGIVDSLIGEALTKYMEFNPGILDLILEKAIQSFNAAEAARRARELVRRKSVLES 418

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADCS      +E++IVEGDSAGGSAKQ R+R+ QA+LPLRGKILN+      K
Sbjct: 419 STLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRNFQAILPLRGKILNIEKTDDTK 478

Query: 507 IRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           I  N +I  L+ ALG   + +  +   LRY +V+IMTDADVDGAHI +LLLTFFY+   +
Sbjct: 479 IYKNTEIQSLITALGLGIKGEEFDVSSLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRE 538

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           L+E+  +++  PPL+++ +G    Y ++E   +  +E F ++      I RFKGLGEM+ 
Sbjct: 539 LVEKGFIYIACPPLYKVERGKNHNYCYNENQLKNTIEGFGENAN--YNIQRFKGLGEMMP 596

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            QL +T M+   R + RVEI   L    +     N LMG K   R +FI+  +S +D
Sbjct: 597 KQLWDTTMNPQTRMMKRVEIEDAL----EADRIFNILMGDKVAPRREFIETHSSNLD 649


>gi|289551838|ref|YP_003472742.1| DNA gyrase subunit B [Staphylococcus lugdunensis HKU09-01]
 gi|289181369|gb|ADC88614.1| DNA gyrase subunit B [Staphylococcus lugdunensis HKU09-01]
          Length = 640

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 256/655 (39%), Positives = 387/655 (59%), Gaps = 20/655 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            ++ + +DNY A  I++LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AGYA
Sbjct: 1   MSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYA 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + IEV ++ + ++ V DNGRGIPV+   K   +  +E+ILT LHAGGKF    Y++SGGL
Sbjct: 61  DQIEVIIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS++L V V R  TI+ Q + +G+P   L++  +  +K GT I F+ D +
Sbjct: 120 HGVGSSVVNALSEDLEVYVHRNETIYHQAYKKGVPQFDLKEVGET-DKTGTVIRFKADSE 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   +D   L K  +  A+L+  +      +++  E+     ++ +++ GG+K+Y++
Sbjct: 179 IFTETTVYDYDTLQKRIRELAFLNKGISITLKDERDDEEQ----REDTYHYEGGIKSYVE 234

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              EN+  I  E       K       +E AI +       + SY N I T EGGTHE G
Sbjct: 235 LMNENKEPIHEEPIYIHQMKDDI---EIEIAIQYNSGYATNLLSYANNIHTYEGGTHEDG 291

Query: 334 LRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            + ALTR +  Y   ++  +        +D       ++S+   +P+F GQTKTKL + +
Sbjct: 292 FKRALTRVLNSYGTKSKIIKEDKDRLSGEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSE 351

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLP 450
            ++ V+    + F+ +L +NP  A  ++E  I  S  R+  +K REV R+ + +    LP
Sbjct: 352 VRQVVDKLFSEYFERFLYENPNVARIIVEKGIMASRARVAAKKAREVTRRKSHLEISSLP 411

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS      +E+FIVEGDSAGGS K+ R+   QA+LPLRGKILNV  +  ++I NN
Sbjct: 412 GKLADCSSKNPDESEIFIVEGDSAGGSTKEGRDSRTQAILPLRGKILNVEKSRLDRILNN 471

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
            +I  ++ A G     ++     RY K++IMTDADVDGAHI +LLLTFFY+ M  LIE  
Sbjct: 472 NEIRQMITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAG 531

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPLF++TQG +  Y  +++   K+  E       K +ISR+KGLGEM A QL E
Sbjct: 532 YVYIAQPPLFKLTQGKQKYYVFNDKELDKLKSELSPT--PKWQISRYKGLGEMNADQLWE 589

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T M+ + R +L+V ++  +    +   +   LMG   + R +FI++ A +   + 
Sbjct: 590 TTMNPDNRMMLQVRLDDAI----EADKTFEMLMGDVVENRRQFIEDNAVYAT-LD 639


>gi|33469292|gb|AAQ19683.1| DNA gyrase subunit B [Staphylococcus haemolyticus]
          Length = 644

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 254/657 (38%), Positives = 385/657 (58%), Gaps = 20/657 (3%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
              ++ + +DNY A  I++LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AG
Sbjct: 3   NTLSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 62

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           YAN IEV ++ + ++ V DNGRGIPV+   K   +  +E+ILT LHAGGKF    Y++SG
Sbjct: 63  YANQIEVIIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 121

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG SVVNALS++L V V R +TI+ Q + +G+P   L++     +K GT I F+ D
Sbjct: 122 GLHGVGSSVVNALSEDLEVYVHRNDTIYHQAYKKGVPQFDLKEVGST-DKTGTVIRFKAD 180

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            +IF +   ++   L K  +  A+L+  +      ++E  E+     ++ +++ GG+K+Y
Sbjct: 181 GEIFTETTVYNYETLQKRIRELAFLNKGISITLRDEREDVEQ----REDTYHYEGGIKSY 236

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++   EN+  I  E       K       +E A+ +       + SY N I T EGGTHE
Sbjct: 237 VELLNENKEPIHEEPIYIHQTKDDV---EIEIAMQYNSGYATNLLSYANNIHTYEGGTHE 293

Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G + ALTR +  Y   ++  +        +D       ++S+   +P+F GQTKTKL +
Sbjct: 294 DGFKRALTRILNSYGTQSKIIKDDKERLSGEDTREGLTAVVSIKHGDPQFEGQTKTKLGN 353

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448
            + ++ V+    + F+ +L ++P  A  ++E  I  S  R+  +K RE   RK+A+    
Sbjct: 354 SEVRQIVDRLFAEHFERFLYEHPNVARIVVEKGIMASRARVAAKKAREVTRRKSALEISS 413

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS      +E+F+VEGDSAGGS K+ R+   QA+LPLRGKILNV  A  ++I 
Sbjct: 414 LPGKLADCSSKKPEESEIFLVEGDSAGGSTKEGRDSKTQAILPLRGKILNVEKARLDRIL 473

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           NN +I  ++ A G     ++     RY K++IMTDADVDGAHI +LLLTFFY+ M  LIE
Sbjct: 474 NNNEIRQMITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 533

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             ++++  PPL+++ QG +  Y  ++    K+  E       K +ISR+KGLGEM A QL
Sbjct: 534 AGYVYIAQPPLYKLAQGKQKYYVFNDRELDKLKSELSPT--PKWQISRYKGLGEMNADQL 591

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            ET M+   R +L+V++   +    +   +   LMG   + R +FI++ A +  ++ 
Sbjct: 592 WETTMNPENRMMLQVKLEDAI----EADHTCEMLMGDVVENRRQFIEDNAVYA-NLD 643


>gi|150024625|ref|YP_001295451.1| DNA gyrase B subunit [Flavobacterium psychrophilum JIP02/86]
 gi|149771166|emb|CAL42633.1| DNA gyrase B subunit [Flavobacterium psychrophilum JIP02/86]
          Length = 647

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 263/662 (39%), Positives = 383/662 (57%), Gaps = 25/662 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            +++   DNY A SI+ LEG+E VRMRP MYIG    + LHHL  EV+DN++DE + G+ 
Sbjct: 1   MSDEIKKDNYSADSIQALEGMEHVRMRPSMYIGDVGVRGLHHLVYEVVDNSIDEAMGGHC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I V ++ +G ++V DNGRGIPV  H K    S LE+++T + AGGKFD  +Y++SGGL
Sbjct: 61  DTIRVDINEDGSISVEDNGRGIPVGIHKK-EGVSALEVVMTKIGAGGKFDKDSYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVA-RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           HGVG+SVVNALS+ L  TV      I+ Q++ +G  L P+++  +    RGT +TF PDP
Sbjct: 120 HGVGVSVVNALSNHLRATVHSSDGKIYEQEYEKGKALYPVKQIGETTK-RGTIVTFYPDP 178

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF     +    L    +  ++L+  +   ++  +E  +K G    E F+   GLK Y+
Sbjct: 179 SIFTQTIEYSYDTLSARMRELSFLNKGITITFTDKRE-KDKDGNFVSEIFHSTEGLKEYI 237

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +    NR      I    +         VE A+ +       I SY N I T EGGTH  
Sbjct: 238 RYLDGNRE---PIIAHVISMDNDKGEIPVEVALIYNTSYTENIFSYVNNINTHEGGTHLQ 294

Query: 333 GLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R  LTR +KKYA+ +    K    I  DD       I+SV + EP+F GQTKTKL + 
Sbjct: 295 GFRTGLTRSLKKYADSSGMLDKLKFEISGDDFREGLTAIISVKVAEPQFEGQTKTKLGNR 354

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRL 449
           +    V  A+ D  ++YL +NP +A  +++ VI  ++ R   +K RE+  RKT +    L
Sbjct: 355 EVVSPVSQAVGDMIENYLEENPNDARIIVQKVILAAQARHAAKKAREMVQRKTVMGGGGL 414

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV  A   K+  
Sbjct: 415 PGKLSDCSEQDPAKCEVFLVEGDSAGGTAKQGRDRAFQAILPLRGKILNVEKAMHHKVFE 474

Query: 510 NQQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           N++I ++  ALG    +         E LRY KV+IM DAD+DG+HI++L+LTFF++ M 
Sbjct: 475 NEEIRNIFTALGVTIGTAEDSKALNLEKLRYHKVVIMCDADIDGSHISTLILTFFFRFMK 534

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
           +LIEQ H+++ +PPL+ + +G K  YA +E  + +  E       G   I R+KGLGEM 
Sbjct: 535 ELIEQGHIYIATPPLYLVKKGNKKEYAWNEVQRDQANERMG----GSATIQRYKGLGEMN 590

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           A QL +T ++   RTL +V I+    SL +     + LMG +   R +FI++ A +  ++
Sbjct: 591 AEQLWDTTLNPEFRTLRQVNID----SLAEADRVFSMLMGDEVPPRREFIEKNAVYA-NI 645

Query: 685 GT 686
             
Sbjct: 646 DA 647


>gi|172035674|ref|YP_001802175.1| DNA gyrase subunit B [Cyanothece sp. ATCC 51142]
 gi|171697128|gb|ACB50109.1| DNA gyrase B subunit [Cyanothece sp. ATCC 51142]
          Length = 642

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 252/653 (38%), Positives = 376/653 (57%), Gaps = 19/653 (2%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +   NY A  I++LEGLEPVR RPGMYIG T  + LHHL  EV+DN++DE +AGY   IE
Sbjct: 2   TTKSNYGAEQIQVLEGLEPVRKRPGMYIGTTGPRGLHHLVYEVVDNSIDEALAGYCTHIE 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           + ++ +G +TV D+GRGIP + HP    KS LE ++T LHAGGKF    Y++SGGLHGVG
Sbjct: 62  IDINPDGSVTVTDDGRGIPTDIHP-STGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+ + V V R + + +Q++ RGIP++ LE K    +  GT I+F PD KIF  
Sbjct: 121 VSVVNALSEWVIVKVWRDDEVHTQRYERGIPITNLETKPDKNHSTGTSISFLPDKKIFTV 180

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              FD + L    +  AYL+  V+  ++ +++       P  E + + GG+K Y+     
Sbjct: 181 GIEFDYSTLAGRLRELAYLNAGVRITFTDNRK-----EEPHVESYCYEGGIKEYVTYMCR 235

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
           ++  +  +I     EK GT +  V         +  +  + N I T +GGTH  GL+  L
Sbjct: 236 DKDPLHQDIIFVSGEKNGT-QVEVALLWCVDAYSDNLLGFANNIRTIDGGTHLEGLKTVL 294

Query: 339 TRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +   A      +    ++  +++     G++SV + EPEF GQTKTKL + + +  V
Sbjct: 295 TRTMNNVARKRNKLKDNDANLGGENVREGLTGVISVKVPEPEFEGQTKTKLGNTEVRGIV 354

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
           ++ + +    YL  NP  A  ++E  ++  +     R+ RE V RK+ +    LPGKLAD
Sbjct: 355 DSLVGEVLTEYLEFNPHVADSIIEKAVQAFKAAEAARRARELVRRKSVLESSPLPGKLAD 414

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS      +E+F+VEGDSAGGSAKQ R+R  QA+LPLRGKI+N+      +I  N +I  
Sbjct: 415 CSTRDPEESEIFLVEGDSAGGSAKQGRDRRFQAILPLRGKIINIEKTDDARIYKNNEIQS 474

Query: 516 LVQALGCRTRSQYREE-DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALG   + +  +   LRY +++IMTDADVDGAHI +LLLTFFY+    L++Q ++++
Sbjct: 475 LITALGLGIKGEEFDPAQLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQRALVDQGYVYI 534

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL+++ +G   VY ++E   Q+ +     +      I RFKGLGEM+ +QL +T M+
Sbjct: 535 ACPPLYKVERGRNHVYCYNERQLQEHINSLPANAN--YSIQRFKGLGEMMPTQLWDTTMN 592

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685
              R + +VEI        +       LMG +   R +FI+     +D  D+ 
Sbjct: 593 PETRRMKQVEIED----AAEADRIFTILMGDRVAPRREFIETYGPKLDLNDLD 641


>gi|300865369|ref|ZP_07110180.1| DNA gyrase subunit B [Oscillatoria sp. PCC 6506]
 gi|300336672|emb|CBN55330.1| DNA gyrase subunit B [Oscillatoria sp. PCC 6506]
          Length = 646

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 252/652 (38%), Positives = 366/652 (56%), Gaps = 15/652 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +Y A  I++LEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AG+   IEV 
Sbjct: 2   TSSYSADQIQVLEGLEAVRKRPGMYIGTTGPRGLHHLVYEVVDNSIDEALAGHCTHIEVD 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +G +TV D+GRGIP     K   KS +E ++T LHAGGKF    Y++SGGLHGVGIS
Sbjct: 62  INADGSVTVTDDGRGIPTGIVAK-TGKSGIETVMTVLHAGGKFGGGGYKVSGGLHGVGIS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ + VTV R   + +Q+F RGIP++ L  K    N+ GT ++F PD +IF    
Sbjct: 121 VVNALSEWVEVTVWRDKKVHNQRFERGIPVTDLVDKPSKENRSGTSVSFLPDTQIFSTGI 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   L    +  AYL+  VK  +S  +    K   P  E + + GG+K Y+     ++
Sbjct: 181 EFDYTILSGRLRELAYLNAGVKITFSDRRLELLKSSEPHIETYCYEGGIKEYIAYMNRDK 240

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
             +  E+   + E+    +  V         +  +  + N I T +GGTH  GL+  LTR
Sbjct: 241 QPLHEEVIFIQGERNNV-QVEVSLQWCIDAYSDNVLGFANNIRTIDGGTHLEGLKAVLTR 299

Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +   A      +    ++  +++      ++SV + +PEF GQTKTKL + + +  V++
Sbjct: 300 TMNAIARKRNKIKENEPNLGGENIREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDS 359

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            + +    YL   P  A  +LE  I+  +     R+ R+ V RK+ +    LPGKLADCS
Sbjct: 360 LVGEVLTEYLEFRPQVADTILEKAIQAFKAAEAARRARDLVRRKSVLESSPLPGKLADCS 419

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +E+++VEGDSAGGSAKQ R+R  QA+LPLRGKILN+      KI  N +I  L+
Sbjct: 420 SRDPSKSEIYLVEGDSAGGSAKQGRDRQFQAILPLRGKILNIEKTDDAKIYKNNEIQSLI 479

Query: 518 QALGCRTR-SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
            ALG   R  ++    LRY  ++IMTDADVDGAHI +LLLTFFY+    L++Q ++++  
Sbjct: 480 TALGLGIRGDEFDPSQLRYHHIVIMTDADVDGAHIRTLLLTFFYRYQRSLVDQGYIYIAC 539

Query: 577 PPLFRITQGTKSVYAHDEEHKQKIL-EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
           PPL+++ +G    Y + +   Q ++  EF  +      I RFKGLGEM+  QL ET M+ 
Sbjct: 540 PPLYKVERGRNHFYCYSDRELQNLIRNEFPANAN--YTIQRFKGLGEMMPQQLWETTMNP 597

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA--SFIDDVG 685
             RTL RVEI        +       LMG +   R +FI+       + D+ 
Sbjct: 598 ESRTLKRVEIED----AAEADRIFTILMGDRVAPRREFIETYGPKLNLTDLD 645


>gi|256545954|ref|ZP_05473309.1| DNA gyrase, B subunit [Anaerococcus vaginalis ATCC 51170]
 gi|256398376|gb|EEU11998.1| DNA gyrase, B subunit [Anaerococcus vaginalis ATCC 51170]
          Length = 634

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 262/648 (40%), Positives = 386/648 (59%), Gaps = 22/648 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y+AS+IR+L+GLEPVR+RPGMYIG T E+ LHHL  EV+DN++DE +AG  + I++S+
Sbjct: 4   SEYNASNIRVLKGLEPVRLRPGMYIGSTSERGLHHLVYEVVDNSVDEALAGRCDYIKISI 63

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           D N  +TV D+G GIP+E HP+   KSTLE +LT LHAGGKFD+  Y++SGGLHGVG+SV
Sbjct: 64  DENNIVTVEDDGSGIPIEKHPQ-TGKSTLETVLTVLHAGGKFDDKAYKVSGGLHGVGVSV 122

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+ L   V R+  I    F RG P S LE     +   GT+ITF+ DP+IF     
Sbjct: 123 VNALSEYLIAEVKREGHIHRMTFERGKPTSDLEIVGDTKE-SGTKITFKADPEIFDVTV- 180

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +D   L    +  A+L+  V+  +   ++ +E         F + GG+K +++    N++
Sbjct: 181 YDKKTLENRFREMAFLNKGVRLIFEDKRDESEIE-------FKYDGGIKEFVEYLNRNKT 233

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I  E+   +  ++ T    +E +  + +     I ++ N I T EGGTH SG R ALTR
Sbjct: 234 PIFKEVPYFEGRQEST---EIEISFQYTDGYSENILTFANNIYTLEGGTHLSGFRSALTR 290

Query: 341 GIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +  YA      +    ++  DD       I+SV I  P+F GQTK KL + + +  V+ 
Sbjct: 291 SVNDYARKYNLLKENEDNLQGDDAREGITAIISVKISNPQFEGQTKGKLGNSEVRGAVDA 350

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
              +   ++L +NP  A  +++  +     R   RK R+   +++ +    LPGKLADC 
Sbjct: 351 FFSEHMGNFLEENPKIAKTIIQKALASRRAREAARKARDLTRKRSILDSTTLPGKLADCQ 410

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                  E+FIVEG+SAGGSAK  R+   QA+LPLRGKI+NV  A  ++I N ++I  ++
Sbjct: 411 SQDIGENEIFIVEGNSAGGSAKGGRDNRIQAILPLRGKIMNVEKANLDRILNYEEIKSMI 470

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A G    S++    LRY K+IIMTDADVDGAHI +LLLTFFY+ M  L++  H+++  P
Sbjct: 471 TAFGTGIGSEFDISKLRYGKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVDGGHIYIAQP 530

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL++I+ G K  Y + ++   +I++E+K       +ISR+KGLGEM A QL ET MD   
Sbjct: 531 PLYKISSGKKERYCYTDKELDEIVKEWKVDN---YKISRYKGLGEMNAEQLWETTMDPEN 587

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           R LL+V   +  +S   T  + + LMG K + R +FI+E A +++++ 
Sbjct: 588 RVLLQV--YEKEDSQMSTDATFSMLMGEKVEPRREFIEENAQYVENLD 633


>gi|288932528|ref|YP_003436588.1| DNA gyrase subunit beta [Ferroglobus placidus DSM 10642]
 gi|288894776|gb|ADC66313.1| DNA gyrase, B subunit [Ferroglobus placidus DSM 10642]
          Length = 621

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 256/646 (39%), Positives = 374/646 (57%), Gaps = 27/646 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + Y A  I +L  LE VR RPGMYIGG   + LHHL  EVIDN++DE +AGY + I V L
Sbjct: 2   EEYTAEQIEVLSDLEAVRKRPGMYIGGVGIRGLHHLLWEVIDNSVDEHLAGYCSRIRVVL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G  +V D+GRGIP E HP    K  LEI++T LHAGGKF    Y++SGGLHGVG+SV
Sbjct: 62  HRDGSASVEDDGRGIPTEMHP--LGKPALEIVMTKLHAGGKFSKKAYKVSGGLHGVGLSV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+ + V V R   I+ Q++ RG+P++PLE   +  N+ GT + F+PD +IF     
Sbjct: 120 VNALSEWVEVIVKRNGKIYRQRYERGVPVTPLEIIGET-NETGTYVRFKPDEEIFETT-E 177

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F    +    +  AYL+  +K     ++         +KEEFY   G+  +++    NR 
Sbjct: 178 FRYDIVAHRLRELAYLNKGLKLELYDERS-------GKKEEFYSERGIVEFVEHLNANRE 230

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTR 340
            I S++     E+ G    +VE A+ +   +   I +Y N I   EGGTH  G R ALTR
Sbjct: 231 KI-SDVIYISGERNGI---SVEVALQYTNTDFETILAYANNIHNVEGGTHVVGFRAALTR 286

Query: 341 GIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
            I +Y +    K    I   D+      ++SV + EP+F GQTKTKL + + +  VE  +
Sbjct: 287 AINEYGK-KNVKNFKPITGVDVREGLTAVISVKVPEPQFEGQTKTKLSNSEVKTAVETIV 345

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
                 +  ++P +A K++E  I  ++ R   ++ R+V ++       LPGKLADCS   
Sbjct: 346 YSELMRWFEEHPEQANKIIEKCILAAKAREAAKRARDVIKRRE-EVATLPGKLADCSSKN 404

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
               ELFIVEG+SAGGSAKQAR+R  QA+LP+RGKI+NV  AG  ++  N +I  ++ A+
Sbjct: 405 PEERELFIVEGESAGGSAKQARDRRFQAILPIRGKIINVEKAGMVRVLKNDEIKAIIAAI 464

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           G      +  +  RY ++IIMTDAD+DGAHI +LLLTFFY+ M  LIE  +L++  PPL+
Sbjct: 465 GAGFGKDFDIKKARYRRIIIMTDADIDGAHIRTLLLTFFYRYMRPLIENGYLYIAQPPLY 524

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           R+ +G K  Y + ++  + +L+          E+ R+KGLGEM   QL ET MD  +R L
Sbjct: 525 RVKKGKKVYYLYSDKELENLLKRIGDA-----EVQRYKGLGEMNPEQLWETTMDPKRRIL 579

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           ++V +          ++ ++ LMG   ++R +FI E A+ + ++ T
Sbjct: 580 IQVTLED----AAMAEEIVSILMGENTEDRKRFIMEHATEVRNLDT 621


>gi|258647794|ref|ZP_05735263.1| DNA gyrase, B subunit [Prevotella tannerae ATCC 51259]
 gi|260852245|gb|EEX72114.1| DNA gyrase, B subunit [Prevotella tannerae ATCC 51259]
          Length = 653

 Score =  616 bits (1588), Expect = e-174,   Method: Composition-based stats.
 Identities = 263/664 (39%), Positives = 388/664 (58%), Gaps = 26/664 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
            NQ+ S NY AS+I++LEGLE VR RP MYIG   +K LHHL  E +DN++DE +AGY  
Sbjct: 3   GNQNKSSNYSASNIQVLEGLEAVRKRPAMYIGDISDKGLHHLVYETVDNSIDEALAGYCT 62

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            IEV++  +  + V DNGRGIPV+ HPK  ++S LE+++T LHAGGKFD  +Y++SGGLH
Sbjct: 63  HIEVTICTDNSIIVQDNGRGIPVDMHPK-EHRSALEVVMTVLHAGGKFDKGSYKVSGGLH 121

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+S VNALS  +   V R   I+ Q++ +G PL P++   + +  RGT+  F PD  +
Sbjct: 122 GVGVSCVNALSKHMTSQVFRDGKIYQQEYEQGKPLYPVKVVGETQ-LRGTKQQFWPDDTV 180

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     ++   L    +  A+L+  +K   +  +   ++ G  ++EEFY   GL+ +++ 
Sbjct: 181 FTATI-YNYDTLATRMRELAFLNAGLKITLTDLR--PDEEGNTKQEEFYSEQGLREFVRY 237

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
              +R+ + +++    T K       +E AI +     E   SY N I T EGGTH  G 
Sbjct: 238 VDSSRTHLFNDVIYISTNKADIP---IEVAIMYNTSYSENVHSYVNNINTIEGGTHLIGF 294

Query: 335 RVALTRGIKKYAELTQ----NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           R A+TR +KKYAE T      K  I I  +D       ++SV + EP+F GQTKT+L + 
Sbjct: 295 RQAITRVLKKYAEQTAAKQIEKAKIEISGEDFREGLTAVISVKVAEPQFEGQTKTRLGNT 354

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRL 449
           +    V  A+ +   +YL ++P EA  +++ VI  +  R+  RK RE  ++   +    L
Sbjct: 355 EVTGAVNQAVGEALTNYLEEHPKEAKLIVDKVILAATARIAARKARESVQRKNPMSGGGL 414

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADCS   A   ELF+VEGDSAGGSAKQAR+R+ QA+LPLRGKILNV  A   K   
Sbjct: 415 PGKLADCSSKDAAVCELFLVEGDSAGGSAKQARSRTTQAILPLRGKILNVEKAMWHKAFE 474

Query: 510 NQQIMDLVQALGCRT-----RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           + ++ +++QALG R        +   E LRY K+IIM DADVDG HIA+L++T FY+ M 
Sbjct: 475 SDEVNNIIQALGVRFGLDEDSKEANIEKLRYHKIIIMADADVDGQHIATLIMTLFYRYMP 534

Query: 565 DLIEQKHLFLISPPLF--RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
            +IE  +L++  PPL+  R  +G    Y ++E  + + +E++    +  I   R+KGLGE
Sbjct: 535 QIIEDGYLYIAMPPLYRCRAKKGHAEEYCYNETARLRFIEQYGDGSEDNITTQRYKGLGE 594

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           M   QL ET M+   R L +V +     S  +   + + LMG     R +FI++ A++  
Sbjct: 595 MNPEQLWETTMNPETRLLKQVSLE----SATNADYTFSMLMGEDVGPRREFIEKNATYA- 649

Query: 683 DVGT 686
           ++  
Sbjct: 650 NIDA 653


>gi|284037876|ref|YP_003387806.1| DNA gyrase subunit beta [Spirosoma linguale DSM 74]
 gi|283817169|gb|ADB39007.1| DNA gyrase, B subunit [Spirosoma linguale DSM 74]
          Length = 666

 Score =  616 bits (1588), Expect = e-174,   Method: Composition-based stats.
 Identities = 248/670 (37%), Positives = 368/670 (54%), Gaps = 23/670 (3%)

Query: 26  SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNA 85
           + E+ ++ A  + + S+ Y A +I++LEGLE VR RP MYIG    + LHHL  EV+DN+
Sbjct: 2   TNELIEADAPVDTTKSN-YGADNIQVLEGLEAVRKRPSMYIGDVGIRGLHHLIWEVVDNS 60

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AGY + I V+++ +  +TV DNGRGIP   + K   KS LEI +T LHAGGKFD 
Sbjct: 61  IDEALAGYCDKISVTINPDNSITVQDNGRGIPTGINTKM-GKSALEIAMTILHAGGKFDK 119

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
            TY++SGGLHGVG+S VNALS ++ V V R+  IF Q++  G+P   +    +  +  GT
Sbjct: 120 DTYKVSGGLHGVGVSCVNALSTDVRVEVHREGKIFEQEYKIGVPQYDVRVIGEATD-TGT 178

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
              F+PD  IF +   +    +    +  AYL+  +       +E+ E      +++F+ 
Sbjct: 179 TTHFKPDASIFTETV-YKYDTVAGRLRELAYLNKGIHIFLKDMREVDETGEPVRQDDFFS 237

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTD 325
            GGL  +++   E R  +           KG     V       E    + SY N I T 
Sbjct: 238 EGGLIEFVEFLDETRPALDGMKPIYMENTKGATPVQVALVY-NYEAGENVLSYVNNINTH 296

Query: 326 EGGTHESGLRVALTRGIKKYAELT-----QNKRAISIISDDLMISAVGILSVFIREPEFA 380
           EGGTH  G R ALTR +K YA+       +N   ++   +D       ++SV ++EP+F 
Sbjct: 297 EGGTHVQGFRSALTRVLKNYADKNPGVLPKNSGKVTFSGEDFRKGLTAVISVKVQEPQFE 356

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + D    V   + D  + +L +NP  A  +++ V+  ++ R+      +   
Sbjct: 357 GQTKTKLGNQDVVSAVSQTMADLLETWLEENPKTAQGIVKKVLVSAQARIAADLAYKRIM 416

Query: 441 KTAIR---KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
                    + LPGKLADCS       EL++VEGDSAGG+AKQ RNR+ QA+LPLRGKIL
Sbjct: 417 TERKDFMGGMGLPGKLADCSDTDPEKCELYLVEGDSAGGTAKQGRNRAFQAILPLRGKIL 476

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQ-----YREEDLRYEKVIIMTDADVDGAHIA 552
           NV  A   KI  N++I ++  ALG R   +        + LRY K+IIMTDADVDG+HI 
Sbjct: 477 NVEKAMEHKIYENEEIKNIWTALGVRLEKKDDETVMNLDKLRYHKIIIMTDADVDGSHIR 536

Query: 553 SLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GK 611
           +L+LT FY+ M  LI+  ++++  PPL+ + +G +  Y   E  ++  ++E    G+   
Sbjct: 537 TLILTLFYRNMKALIDNGYIYIAQPPLYLVKKGKEERYCWTEAQREAAVKELAGSGREEN 596

Query: 612 IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERF 671
           + + R+KGLGEM A QL  T M+ + R+L  V +     S  D     + LMG +   R 
Sbjct: 597 VGVQRYKGLGEMNAEQLWSTTMNPDTRSLKVVTVE----SAADADHVFSTLMGDEVAPRR 652

Query: 672 KFIQERASFI 681
           +FI+  A + 
Sbjct: 653 EFIERNAKYA 662


>gi|99081581|ref|YP_613735.1| DNA topoisomerase IV subunit B [Ruegeria sp. TM1040]
 gi|99037861|gb|ABF64473.1| DNA topoisomerase IV B subunit [Ruegeria sp. TM1040]
          Length = 669

 Score =  616 bits (1588), Expect = e-174,   Method: Composition-based stats.
 Identities = 349/652 (53%), Positives = 448/652 (68%), Gaps = 10/652 (1%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           + S+SD YDASSI +LEGLEPVR RPGMYIGGTDE+ALHH+ +E++DN+MDE +AG+AN 
Sbjct: 24  SPSSSDTYDASSIEVLEGLEPVRQRPGMYIGGTDERALHHMVAEILDNSMDEAVAGHANR 83

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV L  +  LTV DNGRGIP++ HPKFP+KS LE+IL TLHAGGKF    Y+ SGGLHG
Sbjct: 84  IEVELHADYSLTVRDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQTSGGLHG 143

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALSD L V VA+   +F Q+FSRG PL  +EK     N+RGT +TF  D +IF
Sbjct: 144 VGSSVVNALSDSLVVQVAKNKELFEQRFSRGKPLGGVEKIGAAPNRRGTTVTFHADEQIF 203

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
           G    F  ARL K+ +SKAYL   V+  W   K   +    P++  F+FPGGL+ YL   
Sbjct: 204 GS-HRFKPARLFKLVRSKAYLFSGVEIRW---KSAIDDGETPQEATFHFPGGLRDYLTEV 259

Query: 277 LENRSLISSEIFTGKTE--KKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESG 333
           L   S+ +   F GK E  +K    G VEWAI W    +    SYCNT+ T EGGTH +G
Sbjct: 260 LGKSSVYADAPFAGKVEFREKFGEPGYVEWAINWTPSRDGFTQSYCNTVPTPEGGTHVAG 319

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
              A+ +GIK Y EL  NK+A  I  DDLM     ++S FI +P F GQTK +L +  A 
Sbjct: 320 FWSAILKGIKAYGELVGNKKAGQITRDDLMAGGCALVSCFIADPAFVGQTKDRLSTEAAA 379

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
           + VEN++RD FD++L  +   A  +L+++I R+EERLRRR+++E  RK+A +KLRLPGKL
Sbjct: 380 KMVENSVRDHFDNWLAADTKSAGAILDFLILRAEERLRRRQEKETARKSATKKLRLPGKL 439

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
            DC+     GTELFIVEGDSAGGS K ARNR  QA+LPL+GKILNV  A S K+ +N +I
Sbjct: 440 TDCTSKDRSGTELFIVEGDSAGGSGKGARNREYQALLPLKGKILNVLGAASGKLTSNAEI 499

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            DL +ALG    +++  +DLRY+K+IIMTDADVDGAHIASLL+TFF+ +M  LI+  HL+
Sbjct: 500 RDLCEALGVGLGTKFNLDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDGGHLY 559

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           L  PPLFR+TQG K VY  DE  +   +E+    GKGKI++SRFKGLGEM A  LKET M
Sbjct: 560 LACPPLFRLTQGAKRVYCLDEAERDMWMEK-GLGGKGKIDVSRFKGLGEMDAKDLKETTM 618

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D   R L+RV I++D     +T D + +LMG K + RF++IQE A F++++ 
Sbjct: 619 DPKTRKLIRVTIDEDE--PGETSDLVERLMGKKPELRFQYIQENAKFVEELD 668


>gi|302872928|ref|YP_003841561.1| DNA gyrase, B subunit [Clostridium cellulovorans 743B]
 gi|307687881|ref|ZP_07630327.1| DNA gyrase subunit B [Clostridium cellulovorans 743B]
 gi|302575785|gb|ADL49797.1| DNA gyrase, B subunit [Clostridium cellulovorans 743B]
          Length = 636

 Score =  616 bits (1588), Expect = e-174,   Method: Composition-based stats.
 Identities = 251/652 (38%), Positives = 372/652 (57%), Gaps = 22/652 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
                +YDAS I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AG+   I
Sbjct: 2   TDKKQSYDASQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNSIDEALAGFCKNI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V +  +  ++V D+GRG+PV  H K  N+  +E+I+T LHAGGKF    Y++SGGLHGV
Sbjct: 62  DVIIHEDNSISVKDDGRGMPVGMHAKM-NRPAVEVIMTILHAGGKFGGGGYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS+   VTV+    I  Q+F RG   + LE   +     GT + F PD +IF 
Sbjct: 121 GASVVNALSETCIVTVSIDGKIHRQEFHRGNVATELEVIGETEEH-GTEVFFTPDHEIFE 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               FD   L++  +  A+L+  +       +         + + F++ GG+K+++    
Sbjct: 180 TL-EFDYDTLVQRLRELAFLNKGINISIEDRR-------NDKSDSFHYDGGIKSFVSYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N+  +  E    +  +       VE A+ + +     I S+ N I T EGGTH +G + 
Sbjct: 232 RNKEALFPEPIYIEGIQNDIL---VEIALQYNDTYQENIFSFANNIDTAEGGTHLAGFKN 288

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           A+TR I  YA       +   ++  +D+      I+SV I EPEF GQTKTKL + + + 
Sbjct: 289 AMTRVINDYARKFGFLKENDKNLSGEDVREGLTAIISVKIPEPEFEGQTKTKLGNSEVRG 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            V++ L      +L +NP     +++  +  S  R   +K RE   RK+ +    LPGKL
Sbjct: 349 IVDSILGGSVSTFLEENPSVGKIIVDKALTASRAREAAKKARELTRRKSILESTSLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS       E++IVEGDSAGGSAKQ RNR  QA+LPLRGKI+NV     +KI  +  I
Sbjct: 409 ADCSSKDPSECEIYIVEGDSAGGSAKQGRNRRFQAILPLRGKIMNVEKQRLDKILGSDTI 468

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A G      +  + LRY ++IIMTDADVDGAHI +LLLTFFY+ M D+IE+ H++
Sbjct: 469 RSMITAFGAGIGKDFDLDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRYMRDMIEKGHVY 528

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           +  PPL+++++  K  YA++++  + IL++        + I R+KGLGEM A QL +T M
Sbjct: 529 IAQPPLYKVSRNKKEWYAYNDDELKDILKDIGGKDNSTV-IQRYKGLGEMDAQQLWDTTM 587

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D   R LL+V++ + +       +    LMG K + R +FIQE A  + ++ 
Sbjct: 588 DPEHRLLLKVDMGEAMM----ADEIFTILMGEKVEPRREFIQENAKNVVNLD 635


>gi|258513372|ref|YP_003189594.1| DNA gyrase, B subunit [Desulfotomaculum acetoxidans DSM 771]
 gi|257777077|gb|ACV60971.1| DNA gyrase, B subunit [Desulfotomaculum acetoxidans DSM 771]
          Length = 635

 Score =  616 bits (1588), Expect = e-174,   Method: Composition-based stats.
 Identities = 264/653 (40%), Positives = 376/653 (57%), Gaps = 24/653 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +  ++ Y A  I++LEGLE VR RPGMYIG T  K LHHL  EV+DN++DE +AGY + 
Sbjct: 2   PERITERYGAEEIQVLEGLEAVRRRPGMYIGSTGAKGLHHLVYEVVDNSIDEAMAGYCDH 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV ++ +  +TV DNGRGIPV+ H K    S +E+++TTLHAGGKF    Y++SGGLHG
Sbjct: 62  IEVFINEDNSITVTDNGRGIPVDIHSK-TGNSAVELVMTTLHAGGKFGGGGYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+SVVNALS  L V V RQ  IF Q++ RGIP+S L+         GT+ITF PD +IF
Sbjct: 121 VGVSVVNALSKWLEVEVRRQGKIFFQRYERGIPVSDLKIVGDSS-FTGTKITFSPDEEIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            D   F    L +  Q  AYL+ RVK          E         + + GG+K ++   
Sbjct: 180 EDVI-FSRETLEQRLQELAYLNSRVKIYLKDFINNLE-------FSYMYEGGIKDFVAHI 231

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLR 335
            +++ L+         EK       VE A+ + +   E    Y N I T +GGTHE+G R
Sbjct: 232 NQDKILLPEAPLYFVREKDHVM---VEVAMQYTDAYFENLFSYVNNIHTIDGGTHEAGFR 288

Query: 336 VALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR I  YA+     +    ++  +D+      ++S+ + EP+F GQTK KL + + +
Sbjct: 289 SALTRVINDYAKKNNLIKNNEGNLSGEDIREGLTAVISIKVPEPQFEGQTKGKLGNSEVR 348

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIER-SEERLRRRKQREVNRKTAIRKLRLPGK 452
             V++ + +    +L +NP  + K++E  I         R+ +    RK  +    LPGK
Sbjct: 349 GIVDSVVAEGLSTFLEENPAVSKKIIEKSISAFRAREAARKARELTRRKNVLESSTLPGK 408

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L+DCS      +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +KI NN +
Sbjct: 409 LSDCSNRDPSESELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARLDKILNNDE 468

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++ ALG      +     RY K+IIMTDADVDG+HI +LLLTFFY+ M  LIE  ++
Sbjct: 469 IRAMITALGTGIGEDFDITKARYHKLIIMTDADVDGSHIRTLLLTFFYRYMRPLIEAGYI 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           F+  PPL+R+ +G   +Y + +   +  L+E  ++G   I I R+KGLGEM A QL +T 
Sbjct: 529 FIAQPPLYRLKKGKMEIYLYSDRDLENKLKEVGRNG---ISIQRYKGLGEMDAQQLWDTT 585

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           MD   RT+L VE+     +  +     + LMG + + R  FI + A  + ++ 
Sbjct: 586 MDPENRTILMVELE----NAAEADKIFDTLMGDRVEPRRSFINKHAHDVRNLD 634


>gi|309388287|gb|ADO76167.1| DNA gyrase subunit B [Halanaerobium praevalens DSM 2228]
          Length = 640

 Score =  616 bits (1588), Expect = e-174,   Method: Composition-based stats.
 Identities = 261/649 (40%), Positives = 392/649 (60%), Gaps = 23/649 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY+A  I++LEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AGY + + V + 
Sbjct: 8   NYEAEHIQVLEGLEAVRKRPGMYIGSTSLEGLHHLVYEVVDNSIDEAMAGYCSEVIVEIK 67

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
               + V D+GRGIPVE HPK  +K  +E+++TTLHAGGKF    Y++SGGLHGVGISVV
Sbjct: 68  PGNIIKVQDDGRGIPVEIHPKV-DKPAVEVVMTTLHAGGKFGGEGYKVSGGLHGVGISVV 126

Query: 163 NALSDELHVTV-ARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           NAL++ + V +  +   ++ QK+ RGIP   L+       N  GT I F+PDP IF +  
Sbjct: 127 NALTEWMEVEIAWKDGKVYKQKYERGIPQHELQLIGNCDGNCTGTTIEFKPDPLIFEEI- 185

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   L K  +  A+L+  +      +++        ++E+F+F GGL ++++   +++
Sbjct: 186 DFDFKLLAKRLKELAFLNKGINIKIVDNRKE-----EVQQEDFHFDGGLISFVEYLSQSK 240

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALT 339
             + SE    + E +    G++E AI + +        + N I T EGGTH SG + A T
Sbjct: 241 KPLLSEPIYIEDEAE---EGSIEVAIMYHQGYNTSLYTFANNINTKEGGTHLSGFKSATT 297

Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R    YA      +    ++   D+    + I+SV + EP+F GQTKTKL + + +  V+
Sbjct: 298 RTFNDYARNKNLLKDGDDNLKGQDIREGMIAIISVKLSEPQFEGQTKTKLGNSEMRGFVD 357

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
           +A+      YL +NP     ++E  I  +  R   RK R+   RK+A+    LPGKLADC
Sbjct: 358 SAVSSFLKTYLEENPKVGKAIIEKAISAAHARKAARKARDLTRRKSALTSTALPGKLADC 417

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S+  A  TE++IVEGDSAGGSAKQ RNR  QA+LPL+GKILNV  +   KI NN +I  L
Sbjct: 418 SKRKADDTEVYIVEGDSAGGSAKQGRNREFQAILPLKGKILNVEKSRLNKILNNDEIRAL 477

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G     ++   ++RY+++IIMTDADVDGAHI +LLLTFFY+ M  L+E  ++++  
Sbjct: 478 ITAIGTGVGEEFDLTNIRYDRIIIMTDADVDGAHIRTLLLTFFYRYMRPLLENGNIYIAQ 537

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+++ +G +  Y ++++  ++++EE    GK ++ + R+KGLGEM  SQL +T MD  
Sbjct: 538 PPLYKVKKGRREEYVYNDKALKELIEEI---GKDRVSMQRYKGLGEMNPSQLWDTTMDPE 594

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            R LL+V+I   +       ++ + LMG K   R +FIQ+ A  + ++ 
Sbjct: 595 NRILLQVDIEDAIR----ADETFSILMGDKVAPRREFIQKHAREVKNLD 639


>gi|126463188|ref|YP_001044302.1| DNA topoisomerase IV subunit B [Rhodobacter sphaeroides ATCC 17029]
 gi|126104852|gb|ABN77530.1| DNA topoisomerase IV, B subunit [Rhodobacter sphaeroides ATCC
           17029]
          Length = 663

 Score =  616 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 345/647 (53%), Positives = 449/647 (69%), Gaps = 10/647 (1%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + YDASSI +LEGLEPVR RPGMYIGGTDE+ALHHL +E++DN+MDE +AG+A  IEV L
Sbjct: 23  ETYDASSIEVLEGLEPVRKRPGMYIGGTDERALHHLVAEILDNSMDEAVAGHATRIEVEL 82

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  +TV DNGRGIPV+ HPKFP KS LE+IL TLHAGGKF    Y+ SGGLHGVG SV
Sbjct: 83  HADHSVTVRDNGRGIPVDPHPKFPGKSALEVILCTLHAGGKFSGKAYQTSGGLHGVGASV 142

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALSD L V VAR   ++ Q FSRGI   P++      N+RGT ITF PDP+IF     
Sbjct: 143 VNALSDTLRVEVARNRELWMQSFSRGISQGPVKMVGAASNRRGTTITFHPDPEIF-GHLQ 201

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F  ARL+KM +SKAYL   V+  W   K        P++  F+FPGGL  YL  +L   S
Sbjct: 202 FKPARLMKMVRSKAYLFSGVEIRW---KSAIPDGDTPQEAVFHFPGGLGDYLAEQLSGAS 258

Query: 282 LISSEIFTGK--TEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVAL 338
             +   F GK   ++K    G+VEWAI W    +  I SYCNT+ T EGGTHESG   A+
Sbjct: 259 TYAERPFAGKVGFQEKFGVPGSVEWAINWTPARDGFIQSYCNTVPTPEGGTHESGFWSAI 318

Query: 339 TRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +GI+ Y EL +N++A  I  DD++     ++SVFIREP+F GQTK +L + +A + VEN
Sbjct: 319 LKGIRAYGELVKNRKADQITRDDMLAGGSALISVFIREPQFVGQTKDRLATEEAAKLVEN 378

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
           A+RD FD++L  N   A  +L++++ R+EERLRRR+++E  RK+A +KLRLPGKL DCS 
Sbjct: 379 AVRDHFDNWLAANTKSAGAILDFLVLRAEERLRRRQEKETQRKSATKKLRLPGKLVDCSA 438

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
               GTELFIVEGDSAGGSAK AR+R+ QA+LPLRGKILNV  A S K+  N +I DL Q
Sbjct: 439 TARDGTELFIVEGDSAGGSAKMARDRATQALLPLRGKILNVLGAASGKMGANAEINDLCQ 498

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG    +++  ++LRY+K+IIMTDADVDGAHIASLL+TFF+ +M  LI++ HL+L  PP
Sbjct: 499 ALGTGMGTRFNIDELRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDRGHLYLACPP 558

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+R+TQG K +Y  D+  K+  + +    GKGKI++ RFKGLGEM A  LK+T M+   R
Sbjct: 559 LYRLTQGAKRLYVADDVEKELWMAK-GLGGKGKIDVQRFKGLGEMDAKDLKDTTMNPATR 617

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            L+RV I++D     +T D + +LMG K + RF++IQE A F++++ 
Sbjct: 618 KLIRVSIDEDE--PGETGDLVERLMGKKPELRFQYIQENARFVEELD 662


>gi|240139869|ref|YP_002964346.1| DNA topoisomerase IV, subunit B [Methylobacterium extorquens AM1]
 gi|240009843|gb|ACS41069.1| DNA topoisomerase IV, subunit B [Methylobacterium extorquens AM1]
          Length = 685

 Score =  616 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 396/690 (57%), Positives = 500/690 (72%), Gaps = 11/690 (1%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           M+D + DLF          +E+ ++   +  SPA A ++A   YDAS+I +LEGLEPVR 
Sbjct: 1   MSDPARDLFGPGAKPPPAEAERRRRLTPVAPSPAPAPETAEAGYDASAIEVLEGLEPVRR 60

Query: 61  RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           RPGMYIGGTDE+ALHHLF+EVIDN+MDE +AG+A+ IEV L+ +G L V DNGRGIPV+ 
Sbjct: 61  RPGMYIGGTDERALHHLFAEVIDNSMDEAVAGHASFIEVELEESGSLVVTDNGRGIPVDP 120

Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
           HPKFP KS LE+I+TTLHAGGKFD+  YE SGGLHGVGISVVNALSD L V VAR  T++
Sbjct: 121 HPKFPGKSALEVIMTTLHAGGKFDSKVYETSGGLHGVGISVVNALSDVLEVEVARNQTLY 180

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
            Q FSRG     LE   +V+N+RGTR+ F PD +IFG    FD  RL KM +SKAYL G 
Sbjct: 181 RQCFSRGHAQGSLETIGRVQNRRGTRVRFHPDAQIFGS-LKFDPRRLFKMARSKAYLFGG 239

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFY-FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
           V+  W C   + E       E  + FPGGL  YL   +E + L+   IF+GK  K G+H 
Sbjct: 240 VEIRWRCAPSLLEGLEDVPAEAVHRFPGGLSDYLARDIEGKELVLDSIFSGKITKPGSH- 298

Query: 300 GTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISI 357
           G++EWA+AW   ++    SYCNTI T EGGTHE+GLRVAL R ++++AE     KR  ++
Sbjct: 299 GSLEWAVAWTVADDGVSHSYCNTIPTPEGGTHEAGLRVALLRALREHAERVNQAKRMTAV 358

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
            +DD+M +   +LSVFIREPEF GQTK KL +++A R VE A+RD FDH+L  +P +A K
Sbjct: 359 TTDDVMATCASMLSVFIREPEFQGQTKDKLATVEASRIVETAIRDAFDHWLAASPAQANK 418

Query: 418 LLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           LL+WVI+R+EERLRRR+++EV RK+A RKLRLPGKLADCS     G+E+FIVEGDSAGGS
Sbjct: 419 LLDWVIDRAEERLRRRQEKEVARKSATRKLRLPGKLADCSAAGTVGSEIFIVEGDSAGGS 478

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AKQAR+R+ QAVLPLRGKILNVASA  +K+  NQ I DL  ALGC T + +RE DLRY++
Sbjct: 479 AKQARDRATQAVLPLRGKILNVASASRDKLGANQLISDLTLALGCGTGANFREADLRYDR 538

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           VIIMTDADVDGAHIASLL+TFFY++M  LI++ HL+L  PPL+RI+QG KS YA D+  K
Sbjct: 539 VIIMTDADVDGAHIASLLITFFYRQMPKLIDKGHLYLAIPPLYRISQGAKSAYARDDADK 598

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           ++I++   K+G  K+EI RFKGLGEM+ +QLKET MD  KRTLLRV I     + + T D
Sbjct: 599 ERIIKTVFKNG--KVEIGRFKGLGEMMPAQLKETTMDPKKRTLLRVAILD--EARESTGD 654

Query: 658 SINKLMGTKADERFKFIQERASFID--DVG 685
           ++ +LMG K + RF FI ERASF D  ++ 
Sbjct: 655 TVERLMGNKPEARFAFITERASFADGTELD 684


>gi|75908731|ref|YP_323027.1| DNA gyrase subunit B [Anabaena variabilis ATCC 29413]
 gi|75702456|gb|ABA22132.1| DNA gyrase subunit B [Anabaena variabilis ATCC 29413]
          Length = 645

 Score =  616 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 254/651 (39%), Positives = 368/651 (56%), Gaps = 14/651 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +Y A  I++LEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AGY   IEV 
Sbjct: 2   TSSYSADQIQVLEGLEAVRKRPGMYIGSTGPRGLHHLVYEVVDNSIDEALAGYCTHIEVD 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +G +TV D+GRGIP + H +   KS LE ++T LHAGGKF    Y++SGGLHGVGIS
Sbjct: 62  INADGSVTVTDDGRGIPTDTHSR-TGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGIS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ + VTV R   +  Q++ RGIP++ L  K     + GT ++F+PD +IF +  
Sbjct: 121 VVNALSEVVEVTVWRDKKVHIQRYERGIPVTELIAKPYKEARTGTSVSFKPDSQIFTNSI 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   L    +  AYL+  VK  ++ ++    K   P+ E + + GG+K Y+     ++
Sbjct: 181 EFDYITLSSRLRELAYLNAGVKITFTDNRLELLKSDTPKVESYEYKGGIKEYIAYMNRDK 240

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
             +  EI   + E+    +  V            +  + N I T +GGTH  GL+  LTR
Sbjct: 241 QPLHEEIIYVQGERNNV-QIEVSLQWCTDAYTDNVLGFANNIRTIDGGTHLEGLKAVLTR 299

Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +   A      +    ++  + +      ++SV + +PEF GQTKTKL + + +  V++
Sbjct: 300 TLNTIARKRNKIKENEANLSGEHVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDS 359

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            + +    YL  +P  A  +L+  I+  +     R  RE V RK+ +    LPGKLADCS
Sbjct: 360 LVGEVLTEYLEFHPGIADAILDKAIQAFKAAEAARHARELVRRKSVLESSPLPGKLADCS 419

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILN+      KI  N +I  L+
Sbjct: 420 SRDPSESEIYIVEGDSAGGSAKQGRDRRTQAILPLRGKILNIEKTDDSKIYKNNEIQALI 479

Query: 518 QALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
            ALG   + +  +   LRY ++IIMTDADVDGAHI +L+LTFFY+    LIEQ  +++  
Sbjct: 480 TALGLGVKGEEFDSTQLRYHRIIIMTDADVDGAHIRTLILTFFYRYQRALIEQGFIYIAC 539

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+++ +G    Y + E   Q+ + +F  +      I RFKGLGEM+  QL  T M+  
Sbjct: 540 PPLYKVERGRNYEYCYSERDLQQAIAKFPANAN--YTIQRFKGLGEMMPEQLWTTTMNPE 597

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS--FIDDVG 685
            RTL RVEI        +       LMG +   R +FI+   S   + D+ 
Sbjct: 598 TRTLKRVEIED----AAEADRIFTILMGDRVAPRREFIETYGSKLNLTDLD 644


>gi|256831260|ref|YP_003159987.1| DNA gyrase, B subunit [Jonesia denitrificans DSM 20603]
 gi|256684791|gb|ACV07684.1| DNA gyrase, B subunit [Jonesia denitrificans DSM 20603]
          Length = 686

 Score =  616 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 253/692 (36%), Positives = 364/692 (52%), Gaps = 33/692 (4%)

Query: 20  SEKLKKSGEIPDSPAFANQSASDN--YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHL 77
             +L  +   P++P  +   A     YDA++I +LEGLE VR RPGMYIG T E+ LHHL
Sbjct: 1   MAELNTTATDPNTPTQSVSPAQHQGAYDANAITVLEGLEAVRKRPGMYIGSTGERGLHHL 60

Query: 78  FSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137
             EV+DN++DE +AG+ + I V++  +G L V DNGRGIPV  HP    + T+E+++T L
Sbjct: 61  VYEVVDNSVDEALAGHCDTINVTILEDGALEVSDNGRGIPVAIHP-TEGRPTVEVVMTIL 119

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKF  S Y +SGGLHGVGISVVNALS  +   + R    + Q F+ G       ++ 
Sbjct: 120 HAGGKFGGSGYAVSGGLHGVGISVVNALSSRVETVIRRDGYTWHQSFADGGKPVGELRQG 179

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +   ++GT  TF PD  IF     FD   L    Q  A+L+  +    +  +        
Sbjct: 180 EPTEEKGTTQTFWPDADIFET-VDFDFETLRARFQQMAFLNKGLSITLTDKRPDHADVSG 238

Query: 258 P--------------EKEEFYFPGGLKTYLQTKLENR--SLISSEIFTGKTEKKGTHRGT 301
                          +   + +  GL  Y+      +   +I  EI     E     + +
Sbjct: 239 DEVAGGDNSPTSERIKTVTYKYDAGLLDYVHHLNTAKRVEVIHDEIIDFDAE-DTDRKIS 297

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISII 358
           VE A+ W       + +Y NTI T EGGTHE G R ALT  I +YA       ++  ++ 
Sbjct: 298 VEIAMQWTTAYSESVHTYANTISTTEGGTHEEGFRAALTSLINRYARAKNILKEKDDNLT 357

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            +D+      ++SV + EP+F GQTKTKL + +A+  V++ + +  + +L  +P EA ++
Sbjct: 358 GEDIREGLTAVISVKLGEPQFEGQTKTKLGNTEARTFVQSIMNEKMNDWLDAHPNEAKEI 417

Query: 419 LEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           +   I+ S+ RL  RK RE  R+   +    +PGKL DC  N     E++IVEGDSAGGS
Sbjct: 418 IRKAIQASQARLAARKAREATRRKGLLESGGMPGKLRDCQSNRPEECEIYIVEGDSAGGS 477

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           A + RN   QA+LPLRGKILNV  A  +K  +N ++  L+ A G      +    LRY K
Sbjct: 478 AVRGRNPHIQAILPLRGKILNVERARLDKALSNAEVQALITAFGTGIGEDFDMSKLRYHK 537

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ-GTKSVYAHDEEH 596
           +++M DADVDG HI +LLLT  ++ M  LIE  H+FL  PPL+RI     +  Y   ++ 
Sbjct: 538 IVLMADADVDGQHICTLLLTLLFRYMRPLIEHGHVFLAQPPLYRIKWTNAEHDYVFSDKQ 597

Query: 597 KQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
           +   + E    GK   +   I R+KGLGEM  S+L +T MD   RTLL+V +        
Sbjct: 598 RDDCIREGLAAGKRIPKDNGIQRYKGLGEMDYSELWDTTMDPEHRTLLQVTLED----AA 653

Query: 654 DTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              +    LMG   + R  FIQ  A  +  + 
Sbjct: 654 AADEMFAILMGEDVESRRNFIQRNARDVRFLD 685


>gi|291558319|emb|CBL35436.1| DNA gyrase subunit B [Eubacterium siraeum V10Sc8a]
          Length = 686

 Score =  616 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 242/669 (36%), Positives = 354/669 (52%), Gaps = 33/669 (4%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           N      Y A  I+ILEGLE VR RPGMYIG T E  LHHL  E++DNA+DE +AGY   
Sbjct: 30  NTQVEHAYGADDIQILEGLEAVRKRPGMYIGSTGESGLHHLVYEIVDNAIDEALAGYCTE 89

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V +     + V DNGRGIP   HPK    S   ++ T LHAGGKF    Y++SGGLHG
Sbjct: 90  INVKILPGDVIEVTDNGRGIPTGIHPK-EKISAATVVYTILHAGGKFGGGGYKVSGGLHG 148

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS+ L +TV     I  Q+F  G       K     +K GT++ F+PD  IF
Sbjct: 149 VGASVVNALSEWLELTVYDGKEIHFQRFENGGHYKEQMKVIGTTDKTGTQVRFKPDSTIF 208

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                F    LL   + +A+L+  +K   S  ++  +    P++E   + GG+ +Y++  
Sbjct: 209 HST-EFKYDILLDRLREQAFLNAGLKIVLSDLRDEDK----PKQEVLQYEGGIISYVEWL 263

Query: 277 LENR--SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN--PEITSYCNTILTDEGGTHES 332
            + R    +  ++   +         +VE A  +  +       S+ N I T +GGTHE 
Sbjct: 264 QKKRGAEALHPDVVYIEGLLDNI---SVEIAFQYNTDFNSETFRSFANNIHTVDGGTHEI 320

Query: 333 GLRVALTRGIKKYAELTQN----------------KRAISIISDDLMISAVGILSVFIRE 376
             + AL + I  + +  +                 K  + +  + +  +   ++SV + E
Sbjct: 321 AFKNALNKVINDFVKQYKEQQANNNKKSKKKQDEVKEFVPLSGEAIREAINAVISVKLPE 380

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
            EF GQTK KL + + +  V     +   +Y  ++P     + +  I     R   +K  
Sbjct: 381 CEFEGQTKGKLGNPEVRPVVYKITVEKLTYYFEEHPDTIATIAQKCINAQAARDAAKKAM 440

Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
           E  RK+      LPGKLADCS      TE++IVEGDSAGGSAKQ R+R  QA+LPL GK+
Sbjct: 441 EAKRKSVTDGASLPGKLADCSDTDPEKTEVYIVEGDSAGGSAKQGRDRRFQAILPLWGKM 500

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556
           LNV  A ++K+ NN ++  +V+ALG      +    LRY +V++M DADVDG+HI +LLL
Sbjct: 501 LNVEKARADKVYNNDKLQPVVKALGTGIGEDFDITKLRYGRVVVMADADVDGSHIRTLLL 560

Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616
           TFF++ M  LIE+ H++L  PPLF++ +G K  YA  +E +   + E       K+++ R
Sbjct: 561 TFFFRFMRPLIEEGHVYLAQPPLFKVFRGKKVRYAFSDEERDAYIAELAGESNAKVDVQR 620

Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           +KGLGEM   QL ET MD   RT+++V +           +  + LMG K + R +FI++
Sbjct: 621 YKGLGEMDPEQLWETTMDPAARTMIKVNLED----AAKADEIFSILMGDKVEPRREFIEQ 676

Query: 677 RASFIDDVG 685
            A +  D+ 
Sbjct: 677 NARYAKDLD 685


>gi|255038730|ref|YP_003089351.1| DNA gyrase, B subunit [Dyadobacter fermentans DSM 18053]
 gi|254951486|gb|ACT96186.1| DNA gyrase, B subunit [Dyadobacter fermentans DSM 18053]
          Length = 651

 Score =  616 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 256/649 (39%), Positives = 368/649 (56%), Gaps = 20/649 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           ++Y A +I++LEGLE VR RP MYIG T  K +HHL  EV+DN++DE +AGY + I V++
Sbjct: 10  NSYSAENIQVLEGLEAVRKRPAMYIGDTGFKGVHHLIWEVVDNSIDEAMAGYCDTINVTV 69

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + N  +TV DNGRGIP   HPK  NKS LE++LT LHAGGKFD  TY++SGGLHGVG+S 
Sbjct: 70  EKNNSITVKDNGRGIPTGMHPK-ENKSALEVVLTVLHAGGKFDKDTYKVSGGLHGVGVSC 128

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  L   V R+  IF Q+FS G PL P           GT I F PD  IF     
Sbjct: 129 VNALSIHLRAEVHREGKIFEQEFSEGKPLYPTRVIGDSEK-TGTIIHFLPDATIFTVT-E 186

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +    +    +  +YL+  ++      +E  E       EEFY   GL  ++      R 
Sbjct: 187 YKYETIATRLRELSYLNKGIRITLEDKREEDENGQ-FRGEEFYSEVGLNEFVTYLDATRQ 245

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340
            +  E    + +K       VE A+ +     E   SY N I T EGGTH SG R ALTR
Sbjct: 246 PLIPEPIHMENDKGVIP---VEVAMMYNTSYSENVFSYVNNINTIEGGTHVSGFRAALTR 302

Query: 341 GIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +K YAE +    K  + I  DD       ++S+ + EP+F GQTKTKL + +    V  
Sbjct: 303 TLKNYAEKSGILAKEKVEISGDDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVTAAVSQ 362

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
            + +  ++YL ++P EA  +++ VI         ++ +  V RK  +    LPGKL+DCS
Sbjct: 363 VVAEMLENYLEEHPKEARVIIDKVILAAKARIAAKKAREMVQRKNILTGTGLPGKLSDCS 422

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           +   +  EL++VEGDSAGG+AKQ RNR+ QA+LPLRGKILNV  A   KI  N++I ++ 
Sbjct: 423 ETDPNVCELYLVEGDSAGGTAKQGRNRAFQAILPLRGKILNVEKAQEYKIYENEEIKNMF 482

Query: 518 QALGCRT-----RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
            A+G +            + LRY K++IMTDAD+DG+HI +L+LTFF++ M  LI+  ++
Sbjct: 483 TAMGVQIGKDGDERALNIDKLRYHKIVIMTDADIDGSHIRTLILTFFFRYMKILIDNGYI 542

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL+ + +G +  Y   E+ +++ + E     +  + + R+KGLGEM A QL ET 
Sbjct: 543 YIAQPPLYLVKKGKEERYCWTEQQREEAIREIGAGKEDSVNVQRYKGLGEMNAEQLWETT 602

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           M+  +R+L +V +     S  +     + LMG +   R  FI++ A + 
Sbjct: 603 MNPERRSLKQVSVE----SAAEADHLFSMLMGDEVAPRRDFIEKNAKYA 647


>gi|15922995|ref|NP_370529.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus Mu50]
 gi|15925710|ref|NP_373243.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus N315]
 gi|156978336|ref|YP_001440595.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus Mu3]
 gi|253316843|ref|ZP_04840056.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253730404|ref|ZP_04864569.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|254663939|ref|ZP_05143411.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257793543|ref|ZP_05642522.1| DNA gyrase, B subunit [Staphylococcus aureus A9781]
 gi|258411151|ref|ZP_05681430.1| DNA gyrase subunit B [Staphylococcus aureus A9763]
 gi|258420945|ref|ZP_05683879.1| DNA gyrase, B subunit [Staphylococcus aureus A9719]
 gi|258438584|ref|ZP_05689807.1| hypothetical protein SAKG_01059 [Staphylococcus aureus A9299]
 gi|258443960|ref|ZP_05692298.1| hypothetical protein SAJG_01378 [Staphylococcus aureus A8115]
 gi|258446224|ref|ZP_05694384.1| DNA gyrase, B subunit [Staphylococcus aureus A6300]
 gi|258449117|ref|ZP_05697223.1| DNA gyrase, B subunit [Staphylococcus aureus A6224]
 gi|258454405|ref|ZP_05702373.1| DNA gyrase, B subunit [Staphylococcus aureus A5937]
 gi|269201695|ref|YP_003280964.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus ED98]
 gi|282894284|ref|ZP_06302514.1| DNA gyrase, B subunit [Staphylococcus aureus A8117]
 gi|282927755|ref|ZP_06335369.1| DNA gyrase, B subunit [Staphylococcus aureus A10102]
 gi|295406869|ref|ZP_06816673.1| hypothetical protein SMAG_02042 [Staphylococcus aureus A8819]
 gi|296275682|ref|ZP_06858189.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus MR1]
 gi|297245904|ref|ZP_06929766.1| hypothetical protein SLAG_01998 [Staphylococcus aureus A8796]
 gi|54037243|sp|P66937|GYRB_STAAN RecName: Full=DNA gyrase subunit B
 gi|54041556|sp|P66936|GYRB_STAAM RecName: Full=DNA gyrase subunit B
 gi|13699922|dbj|BAB41221.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus N315]
 gi|14245772|dbj|BAB56167.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus Mu50]
 gi|156720471|dbj|BAF76888.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus Mu3]
 gi|253725884|gb|EES94613.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|257787515|gb|EEV25855.1| DNA gyrase, B subunit [Staphylococcus aureus A9781]
 gi|257840036|gb|EEV64501.1| DNA gyrase subunit B [Staphylococcus aureus A9763]
 gi|257843135|gb|EEV67550.1| DNA gyrase, B subunit [Staphylococcus aureus A9719]
 gi|257848143|gb|EEV72135.1| hypothetical protein SAKG_01059 [Staphylococcus aureus A9299]
 gi|257850844|gb|EEV74788.1| hypothetical protein SAJG_01378 [Staphylococcus aureus A8115]
 gi|257855050|gb|EEV77993.1| DNA gyrase, B subunit [Staphylococcus aureus A6300]
 gi|257857550|gb|EEV80445.1| DNA gyrase, B subunit [Staphylococcus aureus A6224]
 gi|257863499|gb|EEV86259.1| DNA gyrase, B subunit [Staphylococcus aureus A5937]
 gi|262073985|gb|ACY09958.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus ED98]
 gi|282590515|gb|EFB95593.1| DNA gyrase, B subunit [Staphylococcus aureus A10102]
 gi|282763329|gb|EFC03459.1| DNA gyrase, B subunit [Staphylococcus aureus A8117]
 gi|285815732|gb|ADC36219.1| DNA gyrase subunit B [Staphylococcus aureus 04-02981]
 gi|294968334|gb|EFG44359.1| hypothetical protein SMAG_02042 [Staphylococcus aureus A8819]
 gi|297177269|gb|EFH36522.1| hypothetical protein SLAG_01998 [Staphylococcus aureus A8796]
 gi|312828568|emb|CBX33410.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129548|gb|EFT85540.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus CGS03]
 gi|329725845|gb|EGG62324.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21172]
 gi|329732607|gb|EGG68957.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21193]
          Length = 644

 Score =  616 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 250/657 (38%), Positives = 379/657 (57%), Gaps = 20/657 (3%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
            A ++ + +DNY A  I++LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AG
Sbjct: 3   TALSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 62

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           YAN IEV ++ + ++ V DNGRGIPV+   K   +  +E+ILT LHAGGKF    Y++SG
Sbjct: 63  YANKIEVVIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 121

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG SVVNALS +L V V R  TI+ Q + +G+P   L++     +K GT I F+ D
Sbjct: 122 GLHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKAD 180

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            +IF +   ++   L +  +  A+L+  ++     +++         ++ +++ GG+K+Y
Sbjct: 181 GEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEE----NVREDSYHYEGGIKSY 236

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++   EN+  I  E       K       VE AI +       + +Y N I T EGGTHE
Sbjct: 237 VELLNENKEPIHDEPIYIHQSKDDI---EVEIAIQYNSGYATNLLTYANNIHTYEGGTHE 293

Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G + ALTR +  Y   ++  +        +D       I+S+   +P+F GQTKTKL +
Sbjct: 294 DGFKRALTRVLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGN 353

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLR 448
            + ++ V+    + F+ +L +NP  A  ++E  ++        ++ +    RK+A+    
Sbjct: 354 SEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVAS 413

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS       E+F+VEGDSAGGS K  R+   QA+LPLRGKILNV  A  ++I 
Sbjct: 414 LPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRIL 473

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           NN +I  ++ A G      +     RY K++IMTDADVDGAHI +LLLTFFY+ M  LIE
Sbjct: 474 NNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 533

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             ++++  PPL+++TQG +  Y +++    K+  E   +   K  I+R+KGLGEM A QL
Sbjct: 534 AGYVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSEL--NPTPKWSIARYKGLGEMNADQL 591

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            ET M+   R LL+V++   +    +   +   LMG   + R +FI++ A +  ++ 
Sbjct: 592 WETTMNPEHRALLQVKLEDAI----EADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 643


>gi|259047900|ref|ZP_05738301.1| DNA gyrase, B subunit [Granulicatella adiacens ATCC 49175]
 gi|259035577|gb|EEW36832.1| DNA gyrase, B subunit [Granulicatella adiacens ATCC 49175]
          Length = 645

 Score =  616 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 253/656 (38%), Positives = 380/656 (57%), Gaps = 22/656 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
                +  YDAS I++LEGLE VR RPGMYIG T    LHHL  E++DN++DE +AG+A 
Sbjct: 5   NKAELAAQYDASQIQVLEGLEAVRKRPGMYIGSTSSAGLHHLVWEIVDNSIDEALAGFAT 64

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            IE+ +     + V D+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLH
Sbjct: 65  HIEIEITKENHIRVTDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLH 123

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS +L V V +   I+ Q + RG  L  L+      +K GT + F PDP+I
Sbjct: 124 GVGASVVNALSTDLTVQVFKDGNIYEQSYKRGAVLEDLKIIG-TTDKHGTSVYFVPDPEI 182

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   F+  +L    +  A+L+  +K   +  +        P ++ F + GG+K+Y++ 
Sbjct: 183 FQETTVFEFDKLANRVRELAFLNKGLKLTITDFR-----PEEPVRKSFCYEGGIKSYVEH 237

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGL 334
             +++ ++  E    + E+ G     VE A+ +         S+ N I T EGGTHESG+
Sbjct: 238 LNKSKQVLFEEPIYVEGEQDGIQ---VEVAMQYTSGYHTNLLSFTNNIHTYEGGTHESGM 294

Query: 335 RVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           + ALTR I  YA   +  +     +  +D+      ++S+   +P+F GQTKTKL + +A
Sbjct: 295 KTALTRVINDYARRQKLMKENEEKLSGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSEA 354

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
           +   +      FD +L++NP  A K++E  I  S+ RL  ++ RE   +K+ +    LPG
Sbjct: 355 RTITDRLFSTHFDKFLMENPQVARKIVEKGILASKARLAAKRAREVTRKKSGLEISNLPG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS N    +ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  +KI  N+
Sbjct: 415 KLADCSSNDPTISELFIVEGDSAGGSAKQGRSRHFQAILPIRGKILNVEKATLDKILANE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  L  A+G      +     RY+K++IMTDADVDG+HI +LL+T FY+ M   +E  +
Sbjct: 475 EIRSLFTAMGTGFGGDFDLSKARYQKLVIMTDADVDGSHIRTLLITLFYRYMRPAVEAGY 534

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPL+++ QG    Y  +++  +  L+E   H   K ++SR+KGLGEM A QL ET
Sbjct: 535 IYIAQPPLYKLKQGKNEYYIQNDKELEAKLKELPAH--PKPQLSRYKGLGEMDAEQLWET 592

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI--DDVG 685
            M+   R++L+V +        +    ++ LMG + + R +FI+  A +I  +D+ 
Sbjct: 593 TMNPENRSMLQVSVED----AAEADQILDILMGDRVEPRREFIESNAKYINMEDLD 644


>gi|77464346|ref|YP_353850.1| DNA topoisomerase IV subunit B [Rhodobacter sphaeroides 2.4.1]
 gi|77388764|gb|ABA79949.1| DNA topoisomerase II/DNA gyrase, subunit B [Rhodobacter sphaeroides
           2.4.1]
          Length = 663

 Score =  616 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 345/647 (53%), Positives = 449/647 (69%), Gaps = 10/647 (1%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + YDASSI +LEGLEPVR RPGMYIGGTDE+ALHHL +E++DN+MDE +AG+A  IEV L
Sbjct: 23  ETYDASSIEVLEGLEPVRKRPGMYIGGTDERALHHLVAEILDNSMDEAVAGHATRIEVEL 82

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  +TV DNGRGIPV+ HPKFP KS LE+IL TLHAGGKF    Y+ SGGLHGVG SV
Sbjct: 83  HADHSVTVRDNGRGIPVDPHPKFPGKSALEVILCTLHAGGKFSGKAYQTSGGLHGVGASV 142

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALSD L V VAR   ++ Q FSRGI   P++      N+RGT ITF PDP+IF     
Sbjct: 143 VNALSDTLRVEVARNRELWVQSFSRGISQGPVKMVGAASNRRGTTITFHPDPEIF-GHLQ 201

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F  ARL+KM +SKAYL   V+  W   K        P++  F+FPGGL  YL  +L   S
Sbjct: 202 FKPARLMKMVRSKAYLFSGVEIRW---KSAIPDGDTPQEAVFHFPGGLGDYLAEQLSGAS 258

Query: 282 LISSEIFTGK--TEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVAL 338
             +   F GK   ++K    G+VEWAI W    +  I SYCNT+ T EGGTHESG   A+
Sbjct: 259 TYAERPFAGKVGFQEKFGVPGSVEWAINWTPARDGFIQSYCNTVPTPEGGTHESGFWSAI 318

Query: 339 TRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +GI+ Y EL +N++A  I  DD++     ++SVFIREP+F GQTK +L + +A + VEN
Sbjct: 319 LKGIRAYGELVKNRKADQITRDDMLAGGSALISVFIREPQFVGQTKDRLATEEASKLVEN 378

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
           A+RD FD++L  N   A  +L++++ R+EERLRRR+++E  RK+A +KLRLPGKL DCS 
Sbjct: 379 AVRDHFDNWLAANTKSAGAILDFLVLRAEERLRRRQEKETQRKSATKKLRLPGKLVDCSA 438

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
               GTELFIVEGDSAGGSAK AR+R+ QA+LPLRGKILNV  A S K+  N +I DL Q
Sbjct: 439 TARDGTELFIVEGDSAGGSAKMARDRATQALLPLRGKILNVLGAASGKMGANAEINDLCQ 498

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG    +++  ++LRY+K+IIMTDADVDGAHIASLL+TFF+ +M  LI++ HL+L  PP
Sbjct: 499 ALGTGMGTRFNIDELRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDRGHLYLACPP 558

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+R+TQG K +Y  D+  K+  + +    GKGKI++ RFKGLGEM A  LK+T M+   R
Sbjct: 559 LYRLTQGAKRLYVADDVEKELWMAK-GLGGKGKIDVQRFKGLGEMDAKDLKDTTMNPATR 617

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            L+RV I++D     +T D + +LMG K + RF++IQE A F++++ 
Sbjct: 618 KLIRVSIDEDE--PGETGDLVERLMGKKPELRFQYIQENARFVEELD 662


>gi|196250913|ref|ZP_03149597.1| DNA topoisomerase IV, B subunit [Geobacillus sp. G11MC16]
 gi|196209554|gb|EDY04329.1| DNA topoisomerase IV, B subunit [Geobacillus sp. G11MC16]
          Length = 645

 Score =  616 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 250/650 (38%), Positives = 358/650 (55%), Gaps = 34/650 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AGY N I V + 
Sbjct: 8   EYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGYGNYILVQIH 67

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV+D GRG+PV  H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 68  KDNSVTVLDEGRGMPVGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 125

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+ L VT+ R   I+ Q+F  G       +     NK GT I F+PDP IF     F
Sbjct: 126 NALSEWLVVTIHRDGFIYRQRFENGGKPVTTLENIGTTNKTGTIIQFKPDPTIFSTTV-F 184

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L +  +  A+L   +K     ++          +E F++  G++ ++    E + +
Sbjct: 185 DYETLSERLRESAFLLKGLKIELVDER-------TGMREVFHYENGIEAFVAYLNEEKDV 237

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           +         E+ G     VE+A  + +   E   S+ N + T +GGTHE+G + A+TR 
Sbjct: 238 LHPVA-YFAGEQNGI---EVEFAFQFHDGYSENVLSFVNNVRTKDGGTHEAGAKTAMTRV 293

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397
             +YA       ++  ++   D+      I+SV I E   +F GQTK KL + +A+  V+
Sbjct: 294 FNEYARRVGLLKEKDKNLEGTDIREGMSAIVSVRIPEHLLQFEGQTKGKLGTSEARSAVD 353

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKLA 454
             + +   ++L +NP  +  L++  I   + R   RK RE  R    RK +   L GKL 
Sbjct: 354 AVVSEQLTYFLQENPDVSAMLIKKAIRAYQAREAARKAREEARSGKKRKGKEALLSGKLT 413

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
                     EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I 
Sbjct: 414 PAQGRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLGDILKNEEIN 473

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++ A+G    + +  ED+ Y+KVIIMTDAD DGAHI  LLLTFFY+ M  LIE   +++
Sbjct: 474 TIIHAIGGGVGADFSIEDINYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVYI 533

Query: 575 ISPPLFRITQG--TKS--VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
             PPL++I++G   K    YA  +E  ++I ++  +       I R+KGLGEM A QL E
Sbjct: 534 ALPPLYKISKGSGKKETVEYAWTDEQLREITKKMGR----GYTIQRYKGLGEMNADQLWE 589

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           T M+   RTL+RV I          +  +  LMG K + R K+I+   +F
Sbjct: 590 TTMNPETRTLIRVRIED----AARAERRVTTLMGDKVEPRRKWIETHVAF 635


>gi|304321475|ref|YP_003855118.1| DNA topoisomerase IV subunit B [Parvularcula bermudensis HTCC2503]
 gi|303300377|gb|ADM09976.1| DNA topoisomerase IV subunit B [Parvularcula bermudensis HTCC2503]
          Length = 665

 Score =  616 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 353/657 (53%), Positives = 466/657 (70%), Gaps = 16/657 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S +Y A  I +LEGLEPVR RPGMYIGGTDE+ALHHLF+EV+DN+MDE +AG+A+ IEV 
Sbjct: 12  SGDYTAKDIEVLEGLEPVRKRPGMYIGGTDERALHHLFAEVLDNSMDEAVAGHASRIEVH 71

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           LD  G LTV DNGRGIP++ HPKF  KS LE+I TTLH+GGKF N  Y  SGGLHGVGIS
Sbjct: 72  LDAEGKLTVADNGRGIPIDKHPKFKTKSALEVIFTTLHSGGKFSNKAYATSGGLHGVGIS 131

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALSD+L V VAR   ++ Q +++G+P S L K     ++RGT +TF PDP+IFG  A
Sbjct: 132 VVNALSDDLVVEVARNRDLYRQTYAKGLPTSKLRKVGAAPSRRGTTVTFHPDPEIFGKGA 191

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKE-IAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
            F  ARL +M +SKAYL G V+  WSCD   +A+    P+KE  +F GGLK YL   +  
Sbjct: 192 SFKPARLFRMARSKAYLFGGVEIRWSCDPSLLADDDPTPQKEVLHFAGGLKDYLTHVVGE 251

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAW----------CEENPEITSYCNTILTDEGGT 329
           R  ++ E+F GK EK+G H GTVEWAI W             +    SYCNT+ T EGGT
Sbjct: 252 RPTVTGEVFAGKIEKEGGH-GTVEWAIVWGRAGFQTPAGQMADGFTNSYCNTVPTPEGGT 310

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           HE G+R AL+RG+K YAEL   K+A +I ++D++ +A  +LSVF+  PEF GQTK KL +
Sbjct: 311 HEQGMRAALSRGLKAYAELAGQKKAANITAEDVLGTAGVLLSVFVSNPEFQGQTKDKLAT 370

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
            +AQ+  E A+R  FDH+L  +  +A +LLEWVI+R+E+R+RRRK++EV R +A++KLRL
Sbjct: 371 AEAQKLTEAAIRPAFDHWLAGHKQQADQLLEWVIDRAEDRIRRRKEKEVQRASAMKKLRL 430

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC+     GTELF+VEGDSAGGSAKQAR R  QA+LPLRGKILNVAS+  +KI  
Sbjct: 431 PGKLADCTAKDRTGTELFLVEGDSAGGSAKQARRRETQAILPLRGKILNVASSTKDKITQ 490

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N+++ D+  A+G    S++  +DLRY+K++IMTDADVDGAHIA+LL+TFF+  M  LI+ 
Sbjct: 491 NKEVTDIALAMGVGLGSRFELDDLRYDKIVIMTDADVDGAHIAALLITFFHISMPGLIQA 550

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
             L++  PPL+R++QG K+VYA D+  ++  ++   K G  K+++ RFKGLGEM A  LK
Sbjct: 551 GRLYMAQPPLYRLSQGGKTVYALDDADREAKIKAEFKSG-SKVDVGRFKGLGEMNAKDLK 609

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI-DDVG 685
           ET MD   R L RV +  D   ++D  + +++LMG  A+ RF+FIQ+ A F+ DD+ 
Sbjct: 610 ETTMDPATRILARVRLTTDE--IEDINNLVDRLMGRNAEPRFRFIQDNAQFVTDDLD 664


>gi|325269651|ref|ZP_08136264.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella
           multiformis DSM 16608]
 gi|324988019|gb|EGC19989.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella
           multiformis DSM 16608]
          Length = 657

 Score =  615 bits (1586), Expect = e-174,   Method: Composition-based stats.
 Identities = 264/668 (39%), Positives = 383/668 (57%), Gaps = 28/668 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
             NQ   +NY AS+I++LEGLE VR RP MYIG   EK LHHL +E +DN++DE +AGY 
Sbjct: 2   AENQENENNYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLINETVDNSIDEAMAGYC 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             IEVS++ +  +TV D+GRGIPV+ H K    S LE+++T LHAGGKFD  +Y++SGGL
Sbjct: 62  KNIEVSINEDNSVTVEDDGRGIPVDEHKKLHK-SALEVVMTVLHAGGKFDKGSYKVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+S VNALS  +   V R   I+ Q++ +G PL P++   +  +K GTR  F PD  
Sbjct: 121 HGVGVSCVNALSSHMKSQVFRDGKIYQQEYEKGKPLYPVKVVGET-DKTGTRQQFWPDAG 179

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     F    + +  +  AYL+  +K   S  +   E       E F+   GLK +++
Sbjct: 180 IFTTTV-FQWDIVARRMRELAYLNAGIKITLSDLRPDPETGKT-RTEVFHAKDGLKEFVR 237

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               +R  +  ++   KTEK+      +E A+ +  +    I SY N I T EGGTH  G
Sbjct: 238 YVDRHRQHLFDDVIYLKTEKQNIP---IEVAVMYNTDYTENIHSYVNNINTIEGGTHLQG 294

Query: 334 LRVALTRGIKKYAEL------TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
            R ALTR +K YA+          K  I I  +D       ++S+ + EP+F GQTKTKL
Sbjct: 295 FRTALTRTLKAYADNDPQISKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKL 354

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRK 446
            + +    V+ A+ +   +YL ++P EA  +   VI  +  R+  RK RE   RK  +  
Sbjct: 355 GNSEVSGAVQQAVGEALSNYLEEHPNEAKLICNKVILAATARVAARKARESVQRKNVMSG 414

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADCS       E+F+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV      +
Sbjct: 415 GGLPGKLADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQRHR 474

Query: 507 IRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           +   + +M+++Q++G R         +   + LRY+K+IIMTDADVDG+HI +L++T FY
Sbjct: 475 VFEAESVMNIIQSIGVRFGVEDEGDFEANTDKLRYDKIIIMTDADVDGSHIDTLIMTLFY 534

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI--SRFK 618
           + M  +IEQ HL++ +PPL++ T    S Y + ++ +Q  L+++    +    I   R+K
Sbjct: 535 RYMPKVIEQGHLYIATPPLYKCTYKKVSEYCYTDQQRQAFLDKYGNGVEDGKTIHTQRYK 594

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           GLGEM   QL ET MD   R L +V I     +  D  +  + LMG   + R +FI++ A
Sbjct: 595 GLGEMNPEQLWETTMDPKTRLLKQVTIE----NAADADEIFSMLMGDDVEPRREFIEKNA 650

Query: 679 SFIDDVGT 686
           ++  ++  
Sbjct: 651 TYA-NIDA 657


>gi|315499760|ref|YP_004088563.1| DNA topoisomerase iv, b subunit [Asticcacaulis excentricus CB 48]
 gi|315417772|gb|ADU14412.1| DNA topoisomerase IV, B subunit [Asticcacaulis excentricus CB 48]
          Length = 668

 Score =  615 bits (1586), Expect = e-174,   Method: Composition-based stats.
 Identities = 358/676 (52%), Positives = 478/676 (70%), Gaps = 16/676 (2%)

Query: 16  SQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALH 75
                   K       +PA +  +A + Y AS+I +LEGLEPVR RPGMYIGGTDEKA+H
Sbjct: 2   PTAKPAPAKAEPAKTSAPAPSALTA-EGYGASAIEVLEGLEPVRKRPGMYIGGTDEKAMH 60

Query: 76  HLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILT 135
           HLF+EV+DNAMDE +AG+A  I V LD  G+L+V D+GRGIPV+ HPK+P KS LE+++T
Sbjct: 61  HLFAEVLDNAMDEAVAGHAKAIWVELDAEGYLSVRDDGRGIPVDPHPKYPGKSALEVVMT 120

Query: 136 TLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK 195
            LH+GGKF    YE SGGLHGVG+SVVNALS+ L VTV R    + Q FSRG+   P+ +
Sbjct: 121 VLHSGGKFSGKAYETSGGLHGVGVSVVNALSEHLEVTVWRDGFEWQQVFSRGLSQGPIRQ 180

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
               +  RGTR  F+PD +IFG  A F  AR+ +M ++KAYL   V+  W CD       
Sbjct: 181 VAPSKK-RGTRERFKPDEEIFGVGAHFKPARIYRMAKAKAYLFRGVQIHWKCDPSQI-SD 238

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-----E 310
             P +++FYFP GL  YL  +++    + ++IF+G+ E++G   G VEWA+ W      E
Sbjct: 239 HTPAEDKFYFPNGLADYLAERVQETETV-TDIFSGRVERQGEA-GAVEWAVTWSGAGFGE 296

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
            +    SYCNTI T +GGTHE+GLR ALTR +K YAE+T +KR   I ++D++  A  ++
Sbjct: 297 FDGFTQSYCNTIPTPDGGTHEAGLRAALTRSLKTYAEMTGDKRGGIITAEDVVAQAGVVI 356

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SVFI+ PEF GQTK +L S +AQR VE AL DPFDH+L+ +P +A +LL++V+ER+E+RL
Sbjct: 357 SVFIKNPEFQGQTKDRLSSSEAQRLVEKALADPFDHWLISSPKQADRLLQFVVERAEDRL 416

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
           ++RK +EV R +A RKLRLPGKLADC++  A+GTELFIVEGDSAGGSAKQARNR+ QA+L
Sbjct: 417 KKRKDKEVQRASATRKLRLPGKLADCARQDANGTELFIVEGDSAGGSAKQARNRNTQAIL 476

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           PLRGKILN+ASA ++K ++NQ++ DL  ALG +  ++++E+DLRYE+++IMTDADVDGAH
Sbjct: 477 PLRGKILNIASATADKAKSNQELSDLGLALGVQPGARFKEDDLRYERIVIMTDADVDGAH 536

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           IASLL+T+FY+ M  +I   HL+L  PPL+RI+ GTK VYA D+ H+ +ILE  K+    
Sbjct: 537 IASLLITYFYRTMPSMIRNGHLYLAMPPLYRISHGTKIVYAKDDAHRLEILE--KEFKGK 594

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADER 670
           K EI RFKGLGEM+ +QLKET MD   RTL RV +     +  D +D +  LMG K + R
Sbjct: 595 KPEIGRFKGLGEMMPAQLKETTMDPKTRTLARVTLP---ENESDIEDLVETLMGRKPELR 651

Query: 671 FKFIQERASFI-DDVG 685
           FK+IQ+ A F+ DD+ 
Sbjct: 652 FKYIQQNAEFVGDDLD 667


>gi|227485761|ref|ZP_03916077.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236316|gb|EEI86331.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus lactolyticus ATCC
           51172]
          Length = 642

 Score =  615 bits (1586), Expect = e-174,   Method: Composition-based stats.
 Identities = 268/654 (40%), Positives = 393/654 (60%), Gaps = 23/654 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
            N + ++NYDA +IR+LEGLEPVR+RPGMYIG T  + LHHL  EV+DN++DE +AG  +
Sbjct: 7   KNMTENNNYDAGNIRVLEGLEPVRLRPGMYIGSTSSRGLHHLVYEVVDNSVDEALAGRCD 66

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I+V+++ +  ++V D+G GIPV+ HP   +KSTLE +LT LHAGGKFD+S Y++SGGLH
Sbjct: 67  YIKVTINKDNVVSVEDDGSGIPVKEHP-TTHKSTLETVLTVLHAGGKFDDSAYKVSGGLH 125

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS+ L   V R   ++  +F+RG     +E         GT+ITF+PD +I
Sbjct: 126 GVGVSVVNALSEYLIAEVKRDGHVYKMEFARGEVTKDIEVIGDTTE-TGTKITFKPDGEI 184

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     F+ + L    +  A+L+  V+  +  ++E  E         F F GG+  ++  
Sbjct: 185 FDTTI-FERSILENRFREMAFLNKGVEIRFEDERENFETS-------FKFEGGISEFVSF 236

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              N+  I   I      ++G     VE+A  + +     I SY N I T EGGTH SGL
Sbjct: 237 LNRNKDPIMEMIPHFDGSQEGI---EVEFAFQYTDGYSENILSYANNIQTPEGGTHLSGL 293

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R +LTR +  YA           ++  +D+      I+SV I +P+F GQTK+KL + + 
Sbjct: 294 RSSLTRSVNDYARKYNFIKDNEENLQGEDIREGITAIISVKISDPQFEGQTKSKLGNSEV 353

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
           +  V++ + +    +L +NP  A  +++  +     R   RK R+   +++ +    LPG
Sbjct: 354 RGVVDSYVSEHLTAFLEENPKPAKSIIDKALASRRAREAARKARDLTRKRSILDSATLPG 413

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC        E+FIVEG+SAGGSAK  R+   QA+LPLRGKI+NV  A  +K+ N++
Sbjct: 414 KLADCQSTDISENEIFIVEGNSAGGSAKGGRDNRIQAILPLRGKIMNVEKAHLDKVLNSE 473

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I +++ A G     ++    LRY K+IIMTDADVDGAHI +LLLTFFY+ M DLI++ H
Sbjct: 474 EIKNMITAFGTGIGKEFDISKLRYGKIIIMTDADVDGAHIRTLLLTFFYRYMKDLIDEGH 533

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPL+RI+QG K  Y + ++ K K ++E    G    +I+R+KGLGEM A QL ET
Sbjct: 534 VYVALPPLYRISQGKKERYVYSDDEKDKYIKEL---GDATFKINRYKGLGEMNAEQLWET 590

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD ++R LLRV   ++      T D+ + LMG K + R  FIQE A ++ D+ 
Sbjct: 591 TMDPDRRVLLRV---EEDLESTTTDDTFSLLMGEKVEPRRNFIQENAKYVTDID 641


>gi|21281734|ref|NP_644820.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus MW2]
 gi|87161454|ref|YP_492727.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88193828|ref|YP_498613.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|151220216|ref|YP_001331039.1| DNA gyrase B subunit [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|161508271|ref|YP_001573930.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|253733834|ref|ZP_04867999.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus TCH130]
 gi|258451362|ref|ZP_05699393.1| DNA gyrase, B subunit [Staphylococcus aureus A5948]
 gi|262049437|ref|ZP_06022309.1| DNA gyrase subunit B [Staphylococcus aureus D30]
 gi|262051893|ref|ZP_06024108.1| DNA gyrase subunit B [Staphylococcus aureus 930918-3]
 gi|282902636|ref|ZP_06310529.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus C160]
 gi|282918073|ref|ZP_06325823.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus D139]
 gi|282920724|ref|ZP_06328443.1| DNA gyrase, B subunit [Staphylococcus aureus A9765]
 gi|282921295|ref|ZP_06329013.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus C427]
 gi|283767795|ref|ZP_06340710.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus H19]
 gi|297209447|ref|ZP_06925845.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300911471|ref|ZP_07128920.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|59797750|sp|Q6GD85|GYRB_STAAS RecName: Full=DNA gyrase subunit B
 gi|59799585|sp|P0A0K7|GYRB_STAAW RecName: Full=DNA gyrase subunit B
 gi|59799586|sp|P0A0K8|GYRB_STAAU RecName: Full=DNA gyrase subunit B
 gi|93204588|sp|Q2FKQ1|GYRB_STAA3 RecName: Full=DNA gyrase subunit B
 gi|296395|emb|CAA50570.1| DNA gyrase [Staphylococcus aureus]
 gi|540541|dbj|BAA01369.1| DNA gyrase B [Staphylococcus aureus]
 gi|21203169|dbj|BAB93870.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus MW2]
 gi|87127428|gb|ABD21942.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87201386|gb|ABD29196.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|150373016|dbj|BAF66276.1| DNA gyrase B subunit [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|160367080|gb|ABX28051.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|253728137|gb|EES96866.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus TCH130]
 gi|257860892|gb|EEV83709.1| DNA gyrase, B subunit [Staphylococcus aureus A5948]
 gi|259160220|gb|EEW45249.1| DNA gyrase subunit B [Staphylococcus aureus 930918-3]
 gi|259162434|gb|EEW47004.1| DNA gyrase subunit B [Staphylococcus aureus D30]
 gi|282315710|gb|EFB46094.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus C427]
 gi|282318358|gb|EFB48718.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus D139]
 gi|282594132|gb|EFB99120.1| DNA gyrase, B subunit [Staphylococcus aureus A9765]
 gi|282597095|gb|EFC02054.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus C160]
 gi|283461674|gb|EFC08758.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus H19]
 gi|296885908|gb|EFH24843.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|298693327|gb|ADI96549.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus ED133]
 gi|300887650|gb|EFK82846.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|315197923|gb|EFU28256.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
           aureus subsp. aureus CGS01]
 gi|320141422|gb|EFW33265.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320144405|gb|EFW36170.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus MRSA177]
 gi|323443267|gb|EGB00884.1| DNA gyrase subunit B [Staphylococcus aureus O46]
 gi|329731718|gb|EGG68078.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21189]
          Length = 644

 Score =  615 bits (1586), Expect = e-174,   Method: Composition-based stats.
 Identities = 250/657 (38%), Positives = 379/657 (57%), Gaps = 20/657 (3%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
            A ++ + +DNY A  I++LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AG
Sbjct: 3   TALSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 62

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           YAN IEV ++ + ++ V DNGRGIPV+   K   +  +E+ILT LHAGGKF    Y++SG
Sbjct: 63  YANQIEVVIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 121

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG SVVNALS +L V V R  TI+ Q + +G+P   L++     +K GT I F+ D
Sbjct: 122 GLHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKAD 180

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            +IF +   ++   L +  +  A+L+  ++     +++         ++ +++ GG+K+Y
Sbjct: 181 GEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEE----NVREDSYHYEGGIKSY 236

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++   EN+  I  E       K       VE AI +       + +Y N I T EGGTHE
Sbjct: 237 VELLNENKEPIHDEPIYIHQSKDDI---EVEIAIQYNSGYATNLLTYANNIHTYEGGTHE 293

Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G + ALTR +  Y   ++  +        +D       I+S+   +P+F GQTKTKL +
Sbjct: 294 DGFKRALTRVLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGN 353

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLR 448
            + ++ V+    + F+ +L +NP  A  ++E  ++        ++ +    RK+A+    
Sbjct: 354 SEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVAS 413

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS       E+F+VEGDSAGGS K  R+   QA+LPLRGKILNV  A  ++I 
Sbjct: 414 LPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRIL 473

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           NN +I  ++ A G      +     RY K++IMTDADVDGAHI +LLLTFFY+ M  LIE
Sbjct: 474 NNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 533

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             ++++  PPL+++TQG +  Y +++    K+  E   +   K  I+R+KGLGEM A QL
Sbjct: 534 AGYVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSEL--NPTPKWSIARYKGLGEMNADQL 591

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            ET M+   R LL+V++   +    +   +   LMG   + R +FI++ A +  ++ 
Sbjct: 592 WETTMNPEHRALLQVKLEDAI----EADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 643


>gi|221640231|ref|YP_002526493.1| DNA topoisomerase IV subunit B [Rhodobacter sphaeroides KD131]
 gi|221161012|gb|ACM01992.1| DNA topoisomerase IV, B subunit [Rhodobacter sphaeroides KD131]
          Length = 651

 Score =  615 bits (1586), Expect = e-174,   Method: Composition-based stats.
 Identities = 345/647 (53%), Positives = 449/647 (69%), Gaps = 10/647 (1%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + YDASSI +LEGLEPVR RPGMYIGGTDE+ALHHL +E++DN+MDE +AG+A  IEV L
Sbjct: 11  ETYDASSIEVLEGLEPVRKRPGMYIGGTDERALHHLVAEILDNSMDEAVAGHATRIEVEL 70

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  +TV DNGRGIPV+ HPKFP KS LE+IL TLHAGGKF    Y+ SGGLHGVG SV
Sbjct: 71  HADHSVTVRDNGRGIPVDPHPKFPGKSALEVILCTLHAGGKFSGKAYQTSGGLHGVGASV 130

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALSD L V VAR   ++ Q FSRGI   P++      N+RGT ITF PDP+IF     
Sbjct: 131 VNALSDTLRVEVARNRELWVQSFSRGISQGPVKMVGAASNRRGTTITFHPDPEIF-GHLQ 189

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F  ARL+KM +SKAYL   V+  W   K        P++  F+FPGGL  YL  +L   S
Sbjct: 190 FKPARLMKMVRSKAYLFSGVEIRW---KSAIPDGDTPQEAVFHFPGGLGDYLAEQLSGAS 246

Query: 282 LISSEIFTGK--TEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVAL 338
             +   F GK   ++K    G+VEWAI W    +  I SYCNT+ T EGGTHESG   A+
Sbjct: 247 TYAERPFAGKVGFQEKFGVPGSVEWAINWTPARDGFIQSYCNTVPTPEGGTHESGFWSAI 306

Query: 339 TRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +GI+ Y EL +N++A  I  DD++     ++SVFIREP+F GQTK +L + +A + VEN
Sbjct: 307 LKGIRAYGELVKNRKADQITRDDMLAGGSALISVFIREPQFVGQTKDRLATEEAAKLVEN 366

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
           A+RD FD++L  N   A  +L++++ R+EERLRRR+++E  RK+A +KLRLPGKL DCS 
Sbjct: 367 AVRDHFDNWLAANTKSAGAILDFLVLRAEERLRRRQEKETQRKSATKKLRLPGKLVDCSA 426

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
               GTELFIVEGDSAGGSAK AR+R+ QA+LPLRGKILNV  A S K+  N +I DL Q
Sbjct: 427 TARDGTELFIVEGDSAGGSAKMARDRATQALLPLRGKILNVLGAASGKMGANAEINDLCQ 486

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG    +++  ++LRY+K+IIMTDADVDGAHIASLL+TFF+ +M  LI++ HL+L  PP
Sbjct: 487 ALGTGMGTRFNIDELRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDRGHLYLACPP 546

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+R+TQG K +Y  D+  K+  + +    GKGKI++ RFKGLGEM A  LK+T M+   R
Sbjct: 547 LYRLTQGAKRLYVADDVEKELWMAK-GLGGKGKIDVQRFKGLGEMDAKDLKDTTMNPATR 605

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            L+RV I++D     +T D + +LMG K + RF++IQE A F++++ 
Sbjct: 606 KLIRVSIDEDE--PGETGDLVERLMGKKPELRFQYIQENARFVEELD 650


>gi|284023042|ref|ZP_06377440.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 132]
          Length = 644

 Score =  615 bits (1586), Expect = e-174,   Method: Composition-based stats.
 Identities = 250/657 (38%), Positives = 378/657 (57%), Gaps = 20/657 (3%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
            A ++ + +DNY A  I++LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AG
Sbjct: 3   TALSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 62

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           YAN IEV ++ + ++ V DNGRGIPV+   K   +  +E+ILT LHAGGKF    Y++SG
Sbjct: 63  YANQIEVVIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 121

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG SVVNALS  L V V R  TI+ Q + +G+P   L++     +K GT I F+ D
Sbjct: 122 GLHGVGSSVVNALSQVLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKAD 180

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            +IF +   ++   L +  +  A+L+  ++     +++         ++ +++ GG+K+Y
Sbjct: 181 GEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEE----NVREDSYHYEGGIKSY 236

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++   EN+  I  E       K       VE AI +       + +Y N I T EGGTHE
Sbjct: 237 VELLNENKEPIHDEPIYIHQSKDDI---EVEIAIQYNSGYATNLLTYANNIHTYEGGTHE 293

Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G + ALTR +  Y   ++  +        +D       I+S+   +P+F GQTKTKL +
Sbjct: 294 DGFKRALTRVLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGN 353

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLR 448
            + ++ V+    + F+ +L +NP  A  ++E  ++        ++ +    RK+A+    
Sbjct: 354 SEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVAS 413

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS       E+F+VEGDSAGGS K  R+   QA+LPLRGKILNV  A  ++I 
Sbjct: 414 LPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRIL 473

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           NN +I  ++ A G      +     RY K++IMTDADVDGAHI +LLLTFFY+ M  LIE
Sbjct: 474 NNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 533

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             ++++  PPL+++TQG +  Y +++    K+  E   +   K  I+R+KGLGEM A QL
Sbjct: 534 AGYVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSEL--NPTPKWSIARYKGLGEMNADQL 591

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            ET M+   R LL+V++   +    +   +   LMG   + R +FI++ A +  ++ 
Sbjct: 592 WETTMNPEHRALLQVKLEDAI----EADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 643


>gi|221141520|ref|ZP_03566013.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
           aureus subsp. aureus str. JKD6009]
 gi|257424201|ref|ZP_05600630.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257426878|ref|ZP_05603280.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257429514|ref|ZP_05605901.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257432161|ref|ZP_05608524.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257435122|ref|ZP_05611173.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M876]
 gi|258423233|ref|ZP_05686125.1| DNA gyrase subunit B [Staphylococcus aureus A9635]
 gi|282907052|ref|ZP_06314900.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282910031|ref|ZP_06317839.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282912279|ref|ZP_06320075.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282912919|ref|ZP_06320711.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M899]
 gi|282922547|ref|ZP_06330237.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus C101]
 gi|283959489|ref|ZP_06376930.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293511562|ref|ZP_06670256.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M809]
 gi|293550171|ref|ZP_06672843.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M1015]
 gi|295429302|ref|ZP_06821924.1| hypothetical protein SIAG_01512 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297589196|ref|ZP_06947837.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
           aureus subsp. aureus MN8]
 gi|304379953|ref|ZP_07362682.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|59797755|sp|Q6GKU0|GYRB_STAAR RecName: Full=DNA gyrase subunit B
 gi|257273219|gb|EEV05321.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257276509|gb|EEV07960.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257279995|gb|EEV10582.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257283040|gb|EEV13172.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257285718|gb|EEV15834.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M876]
 gi|257846562|gb|EEV70584.1| DNA gyrase subunit B [Staphylococcus aureus A9635]
 gi|269939531|emb|CBI47889.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus TW20]
 gi|282314768|gb|EFB45154.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus C101]
 gi|282323019|gb|EFB53338.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M899]
 gi|282323975|gb|EFB54291.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282326097|gb|EFB56402.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282329951|gb|EFB59472.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus Btn1260]
 gi|283789081|gb|EFC27908.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290919218|gb|EFD96294.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M1015]
 gi|291465520|gb|EFF08052.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M809]
 gi|295127061|gb|EFG56705.1| hypothetical protein SIAG_01512 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297577707|gb|EFH96420.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
           aureus subsp. aureus MN8]
 gi|302749916|gb|ADL64093.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
           aureus subsp. aureus str. JKD6008]
 gi|304341533|gb|EFM07443.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|312436854|gb|ADQ75925.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|315195231|gb|EFU25619.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
           aureus subsp. aureus CGS00]
 gi|329312728|gb|AEB87141.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus T0131]
          Length = 644

 Score =  615 bits (1586), Expect = e-174,   Method: Composition-based stats.
 Identities = 250/657 (38%), Positives = 379/657 (57%), Gaps = 20/657 (3%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
            A ++ + +DNY A  I++LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AG
Sbjct: 3   TALSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 62

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           YAN IEV ++ + ++ V DNGRGIPV+   K   +  +E+ILT LHAGGKF    Y++SG
Sbjct: 63  YANQIEVVIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 121

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG SVVNALS +L V V R  TI+ Q + +G+P   L++     +K GT I F+ D
Sbjct: 122 GLHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKAD 180

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            +IF +   ++   L +  +  A+L+  ++     +++         ++ +++ GG+K+Y
Sbjct: 181 GEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEE----NVREDSYHYEGGIKSY 236

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++   EN+  I  E       K       VE AI +       + +Y N I T EGGTHE
Sbjct: 237 VELLNENKEPIHDEPIYIHQSKDDI---EVEIAIQYNSGYATNLLTYANNIHTYEGGTHE 293

Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G + ALTR +  Y   ++  +        +D       I+S+   +P+F GQTKTKL +
Sbjct: 294 DGFKRALTRVLNSYGLSSKIMKEDKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGN 353

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLR 448
            + ++ V+    + F+ +L +NP  A  ++E  ++        ++ +    RK+A+    
Sbjct: 354 SEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVAS 413

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS       E+F+VEGDSAGGS K  R+   QA+LPLRGKILNV  A  ++I 
Sbjct: 414 LPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRIL 473

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           NN +I  ++ A G      +     RY K++IMTDADVDGAHI +LLLTFFY+ M  LIE
Sbjct: 474 NNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 533

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             ++++  PPL+++TQG +  Y +++    K+  E   +   K  I+R+KGLGEM A QL
Sbjct: 534 AGYVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSEL--NPTPKWSIARYKGLGEMNADQL 591

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            ET M+   R LL+V++   +    +   +   LMG   + R +FI++ A +  ++ 
Sbjct: 592 WETTMNPEHRALLQVKLEDAI----EADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 643


>gi|126697163|ref|YP_001092049.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9301]
 gi|126544206|gb|ABO18448.1| DNA gyrase, subunit B [Prochlorococcus marinus str. MIT 9301]
          Length = 655

 Score =  615 bits (1586), Expect = e-174,   Method: Composition-based stats.
 Identities = 261/657 (39%), Positives = 379/657 (57%), Gaps = 15/657 (2%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           S    +   S++Y A  I++LEGLEPVR RPGMYIG T  + LHHL  EV+DN++DE +A
Sbjct: 2   SEDKRSNKISNDYGAEQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLIYEVVDNSVDEALA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+ + IE+ L  +G   + DNGRGIP + HP+   KS LE +LT LHAGGKF +  Y++S
Sbjct: 62  GHCDHIEIVLRADGSALISDNGRGIPTDIHPR-TGKSALETVLTVLHAGGKFGSGGYKVS 120

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS--PLEKKEKVRNKRGTRITF 209
           GGLHGVGISVVNALS+ + VTV R  + F+Q+F +GI       +K+    +K+GT I F
Sbjct: 121 GGLHGVGISVVNALSEWVKVTVYRDGSEFNQRFEKGISKGELESKKQTGKSSKKGTTICF 180

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +PD  IF     F+ A L    +  AYL+G VK  +  ++         E E + + GG+
Sbjct: 181 KPDKTIFSGGIEFEYALLSSRLRELAYLNGGVKIVFRDERNQLSDGSFKE-EIYLYQGGI 239

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGT 329
           K Y++     +  I  EI    ++K+  +             +  I  + N I T +GGT
Sbjct: 240 KEYVEYMNAEKESIHPEIIYVDSQKENVY-VEAALQWCSDVYSDNILGFANNIRTIDGGT 298

Query: 330 HESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  GL+  LTR     A+    ++ I  ++  +++      +LSV + +PEF GQTKTKL
Sbjct: 299 HIEGLKTVLTRTFNNLAKKRGKRKDIEKNLAGENIREGLTVVLSVKVPDPEFEGQTKTKL 358

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
            + + +  V++ + +    Y+  NP     +LE  I+        R+ RE V RK+ +  
Sbjct: 359 GNTEVRGIVDSLIGEALTKYMEFNPGILDLILEKAIQSFNAAEAARRARELVRRKSVLES 418

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADCS      +E++IVEGDSAGGSAKQ R+R+ QA+LPLRGKILN+      K
Sbjct: 419 STLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRNFQAILPLRGKILNIEKTDDTK 478

Query: 507 IRNNQQIMDLVQALGCRTR-SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           I  N +I  L+ ALG   +  ++ E  LRY +V+IMTDADVDGAHI +LLLTFFY+   +
Sbjct: 479 IYKNTEIQSLITALGLGIKGEEFDESSLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRE 538

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           L+E+  +++  PPL+++ +G    Y ++E   +  ++ F ++      I RFKGLGEM+ 
Sbjct: 539 LVEKGFIYIACPPLYKVERGKNHNYCYNENQLKDTIQGFGENAN--YNIQRFKGLGEMMP 596

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            QL +T M+   R + RVEI   L    +     N LMG K   R +FI+  +S +D
Sbjct: 597 KQLWDTTMNPQTRMMKRVEIEDAL----EADRIFNILMGDKVAPRREFIETHSSNLD 649


>gi|325567637|ref|ZP_08144304.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Enterococcus
           casseliflavus ATCC 12755]
 gi|325159070|gb|EGC71216.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Enterococcus
           casseliflavus ATCC 12755]
          Length = 649

 Score =  615 bits (1586), Expect = e-174,   Method: Composition-based stats.
 Identities = 248/653 (37%), Positives = 383/653 (58%), Gaps = 24/653 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  YDAS I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AG+A+ I+V 
Sbjct: 12  AKAYDASQIQVLEGLEAVRKRPGMYIGSTSSEGLHHLVWEIVDNSIDEALAGFASSIQVI 71

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGVG S
Sbjct: 72  IEPDNSITVVDDGRGIPVDIQAK-TGRPAVETVFTILHAGGKFGGGGYKVSGGLHGVGSS 130

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  L V V ++  ++ Q++ RG  +  L+  ++  ++ GT + F PDP+IF +  
Sbjct: 131 VVNALSTTLDVKVYKEGKVYYQEYHRGAVVDDLKVIDET-DRHGTTVHFVPDPEIFTETT 189

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F+  +L    +  A+L+  +K      +E       P  +E+++ GG+K+Y++    ++
Sbjct: 190 EFNFDKLATRVRELAFLNRGLKISIEDKREEK-----PVLKEYHYDGGIKSYVEHLNASK 244

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
           ++I  +    + E++G    TVE ++ + +       S+ N I T EGGTHE G + ALT
Sbjct: 245 TVIFPDPIYLEGEQQGI---TVEVSMQYTDSYHSNLLSFANNIHTYEGGTHEFGFKTALT 301

Query: 340 RGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA  ++  +    ++  +D+      ++S+   +P+F GQTKTKL + + +   +
Sbjct: 302 RVINDYARKSKLMKENDENLTGEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRTVTD 361

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADC 456
               + F  +L++NP    +++E  +  S+ R   ++ RE+  RK A+    LPGKLADC
Sbjct: 362 RLFSEHFTKFLMENPNVGRQVVEKGLLASKARQAAKRAREMTRRKGALEISNLPGKLADC 421

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S N     ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  +KI  N++I  L
Sbjct: 422 SSNDPEKCELFIVEGDSAGGSAKQGRSREFQAILPIRGKILNVEKASMDKILANEEIRSL 481

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    + +     RY K++IMTDADVDGAHI +LLLT FY+ M  ++E  ++++  
Sbjct: 482 FTAMGTGFGADFDVAKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYVYIAQ 541

Query: 577 PPLFRITQGTKSVYAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           PPL+ + QG    Y       E+  +  +E        K  + R+KGLGEM   QL ET 
Sbjct: 542 PPLYGVKQGKNIHYIQPGKNAEQDLKNTIESLPAT--PKPTVQRYKGLGEMDDHQLWETT 599

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           MD + R +LRV ++  +    +       LMG + + R  FI+E A ++ ++ 
Sbjct: 600 MDPDNRMMLRVSVDDAI----EADQIFEMLMGDRVEPRRAFIEENAHYVKNLD 648


>gi|327438158|dbj|BAK14523.1| type IIA topoisomerase, B subunit [Solibacillus silvestris StLB046]
          Length = 641

 Score =  615 bits (1586), Expect = e-174,   Method: Composition-based stats.
 Identities = 255/656 (38%), Positives = 372/656 (56%), Gaps = 21/656 (3%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A  +     +YDA  I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY
Sbjct: 2   ALEDNKVQQSYDADQIQVLEGLEAVRKRPGMYIGSTSSKGLHHLVWEIVDNSIDEALAGY 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
            + I V+++ + ++ V DNGRGIPV+   K      +E+I+T LHAGGKF    Y++SGG
Sbjct: 62  CSGITVTIEQDNWIRVEDNGRGIPVDIQEKM-GMPAVEVIMTVLHAGGKFGGGGYKVSGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG SVVNALS +  V V R   I    F RG  +  L    +  +  GT   F+ D 
Sbjct: 121 LHGVGASVVNALSSQTIVQVHRDGKIHEIIFERGHTVQQLTVIGET-DHTGTTTRFKADS 179

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IF +   ++   L    +  AYL+  +    + ++   E+      E F+F GG++ Y+
Sbjct: 180 EIFKETTVYEYDILATRIRELAYLNRGISLTIADERTGQERS-----ETFHFEGGIREYV 234

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHES 332
           +   EN+  I + I     EK+G    TVE A+ +         S+ N I T EGGTHES
Sbjct: 235 EHINENKEAIHAPIDVL-GEKEGI---TVEIAMQYNAGFSSNIMSFANNINTYEGGTHES 290

Query: 333 GLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G + ALTR I  YA  +   +    ++  +D+      I+S+   EP+F GQTKTKL + 
Sbjct: 291 GFKTALTRVINDYARKSNLIKESDANLTGEDVREGLTAIVSIKHPEPQFEGQTKTKLGNS 350

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRL 449
           +  +       D F+ +L++NP  A +++E   +        ++ +    RK+A+    L
Sbjct: 351 EVSQITNALFSDGFERFLLENPSVARQVIEKGTMAARARVAAKKAREFTRRKSALEVSSL 410

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADCS      +E++IVEGDSAGGSAK  R+R  QA+LPLRGKILNV  A  ++I +
Sbjct: 411 PGKLADCSSTNPAESEIYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDRILS 470

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N +I  ++ A G     ++  E  RY K++IMTDADVDGAHI  LLLTFF++ M  LIE 
Sbjct: 471 NAEIRAMITAFGTGIGEEFNLEKARYHKIVIMTDADVDGAHIRVLLLTFFFRFMRPLIEA 530

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
            +++   PPL+++ QG    Y + ++  + IL    K    K  + R+KGLGEM A+QL 
Sbjct: 531 GYVYAAKPPLYQVKQGKHVEYCYSDQELEDILNRLPK--LPKPNVQRYKGLGEMNATQLW 588

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +T MD   RTL+RVE++  +    +     + LMG +   R  FI+E A ++ D+ 
Sbjct: 589 DTTMDPEHRTLIRVELDDAI----EADKIFDHLMGDEVAPRRDFIEENAVYVQDLD 640


>gi|49484917|ref|YP_042138.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus MSSA476]
 gi|49243360|emb|CAG41777.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus MSSA476]
          Length = 643

 Score =  615 bits (1585), Expect = e-174,   Method: Composition-based stats.
 Identities = 250/657 (38%), Positives = 379/657 (57%), Gaps = 20/657 (3%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
            A ++ + +DNY A  I++LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AG
Sbjct: 2   TALSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 61

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           YAN IEV ++ + ++ V DNGRGIPV+   K   +  +E+ILT LHAGGKF    Y++SG
Sbjct: 62  YANQIEVVIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 120

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG SVVNALS +L V V R  TI+ Q + +G+P   L++     +K GT I F+ D
Sbjct: 121 GLHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKAD 179

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            +IF +   ++   L +  +  A+L+  ++     +++         ++ +++ GG+K+Y
Sbjct: 180 GEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEE----NVREDSYHYEGGIKSY 235

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++   EN+  I  E       K       VE AI +       + +Y N I T EGGTHE
Sbjct: 236 VELLNENKEPIHDEPIYIHQSKDDI---EVEIAIQYNSGYATNLLTYANNIHTYEGGTHE 292

Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G + ALTR +  Y   ++  +        +D       I+S+   +P+F GQTKTKL +
Sbjct: 293 DGFKRALTRVLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGN 352

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLR 448
            + ++ V+    + F+ +L +NP  A  ++E  ++        ++ +    RK+A+    
Sbjct: 353 SEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVAS 412

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS       E+F+VEGDSAGGS K  R+   QA+LPLRGKILNV  A  ++I 
Sbjct: 413 LPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRIL 472

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           NN +I  ++ A G      +     RY K++IMTDADVDGAHI +LLLTFFY+ M  LIE
Sbjct: 473 NNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 532

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             ++++  PPL+++TQG +  Y +++    K+  E   +   K  I+R+KGLGEM A QL
Sbjct: 533 AGYVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSEL--NPTPKWSIARYKGLGEMNADQL 590

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            ET M+   R LL+V++   +    +   +   LMG   + R +FI++ A +  ++ 
Sbjct: 591 WETTMNPEHRALLQVKLEDAI----EADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 642


>gi|254495273|ref|ZP_05108197.1| DNA gyrase subunit B [Polaribacter sp. MED152]
 gi|85819627|gb|EAQ40784.1| DNA gyrase subunit B [Polaribacter sp. MED152]
          Length = 645

 Score =  615 bits (1585), Expect = e-174,   Method: Composition-based stats.
 Identities = 250/658 (37%), Positives = 379/658 (57%), Gaps = 24/658 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           ++    +YDASSI+ LEG+E VRMRP MYIG    + LHHL  EV+DN++DE + GY + 
Sbjct: 2   SEEKKHSYDASSIQALEGMEHVRMRPSMYIGDVGIRGLHHLVYEVVDNSIDEAMGGYCDT 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV+++ +  +T  DNGRGIPV  H K    S L++++T + AGGKFD  +Y++SGGLHG
Sbjct: 62  IEVTINEDNSITTKDNGRGIPVGLHKK-EGVSALQVVMTKIGAGGKFDKDSYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+S VNALSD L  TV ++  I+ Q++ RG  L P++      +  GT +TF PD  IF
Sbjct: 121 VGVSCVNALSDHLTATVHKEGKIWQQEYERGKTLYPVKTIGDT-DFTGTIVTFLPDKSIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                ++   L    +  AYL+  +    +  +   ++      E F+   GL  +++  
Sbjct: 180 TQSTEYNYETLATRMRELAYLNKGITITLTDKRNKDDEG-NFISETFHSNKGLPEFIEYL 238

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
              R  + + + + + EK G     VE A+ +       + SY N I T EGGTH SG R
Sbjct: 239 DSTREQLIANVISMEGEKNGIP---VEVAMVYNTSYAENLHSYVNNINTHEGGTHLSGFR 295

Query: 336 VALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
             LT  +KKYA+ +   + +      DD       I+SV + EP+F GQTKTKL + +  
Sbjct: 296 RGLTGTLKKYADESGLLKNVKFDIAGDDFREGLTAIVSVKVAEPQFEGQTKTKLGNREVT 355

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGK 452
             V  A+ +    YL +NP +A  +++ VI  +  R   RK R++ ++ + +    LPGK
Sbjct: 356 SAVSQAVSEMLTDYLEENPNDAKTIVQKVILAATARHAARKARDMVQRKSVMSIGGLPGK 415

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV  A   K+  N++
Sbjct: 416 LSDCSETDPAQCEIFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFENEE 475

Query: 513 IMDLVQALGCRTRSQYREEDLR-----YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
           I ++  ALG    ++     L      Y KV+IM DADVDG+HIA+L+LTFF++ M +++
Sbjct: 476 IKNMFTALGVSIGTEEDPRALNLSKIRYHKVVIMCDADVDGSHIATLILTFFFRYMKEMV 535

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           EQ ++++ +PPL+ + +G K  YA D++ +  I ++      G + I R+KGLGEM A Q
Sbjct: 536 EQGYIYIATPPLYLVKKGQKRQYAWDDDQRDLIAQQMG----GSVTIQRYKGLGEMNAEQ 591

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           L +T M+   RTL +V I+    S  +     + LMG +   R  FI+  A +  ++ 
Sbjct: 592 LWDTTMNPEFRTLRKVVID----SPTEADRVFSMLMGDEVPPRRDFIERNAKYA-NID 644


>gi|317054739|ref|YP_004103206.1| DNA gyrase subunit B [Ruminococcus albus 7]
 gi|315447008|gb|ADU20572.1| DNA gyrase, B subunit [Ruminococcus albus 7]
          Length = 662

 Score =  615 bits (1585), Expect = e-174,   Method: Composition-based stats.
 Identities = 256/672 (38%), Positives = 378/672 (56%), Gaps = 20/672 (2%)

Query: 21  EKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSE 80
               K  EI D+ + +    S+NYD + I +LEGLEPVR+RPGMYIG T  K LHHL  E
Sbjct: 3   NDNIKEVEIVDTESISQIDKSNNYDENQIEVLEGLEPVRVRPGMYIGSTGPKGLHHLVYE 62

Query: 81  VIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140
           ++DNA+DE +AGY   I V +     + VVDNGRGIP   HPK    S   ++ T LHAG
Sbjct: 63  IVDNAIDEALAGYCTEIIVDILPGDVIRVVDNGRGIPTGIHPK-EGISAATVVYTVLHAG 121

Query: 141 GKFDNSTYEISGG-LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GKF         G LHGVG SVVNALS+ L +TV     +  Q+F RG    PL+   + 
Sbjct: 122 GKFGGGGGYKVAGGLHGVGASVVNALSEYLELTVYDGKNVHFQRFDRGHYSEPLKIIGET 181

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            +K GT + F+PDP+IF +   FD   LLK  + +A+L+  +K  +S  +        P 
Sbjct: 182 -DKTGTEVKFKPDPEIFQETTTFDYEILLKRLREQAFLNAGIKIVFSDLR----NAEKPI 236

Query: 260 KEEFYFPGGLKTYLQTKLENR--SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
            E  ++ GG++ +++   + R    +S ++      +        E A+ + +     I 
Sbjct: 237 SEVLHYEGGIRQFVEHIHKTRGVEPLSEDVIYINGVEDDMF---AEIALQYNDTYNEIIL 293

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFI 374
           S+ N I T +GG+HE   + ALT+ +  Y +     +      + +D       I+SV +
Sbjct: 294 SFANNIHTPDGGSHEMAFKSALTKILNDYGKAHNLIKDNDDALMGEDCREGLTAIVSVKL 353

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
              EF GQTK +L + + +  V+  L++   +YL +NP  A  + +  I+  + R   ++
Sbjct: 354 TNCEFEGQTKGRLGNPEVRPFVDKMLKEKLRNYLEENPAVAKAIFDKSIQAQKAREAAKR 413

Query: 435 QRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            RE   RK+ +    LPGKLADCS+     TE++IVEGDSAGGSAK+ R+R  QA+LPL 
Sbjct: 414 ARELTRRKSVLESASLPGKLADCSERDMSMTEIYIVEGDSAGGSAKEGRDRRYQAILPLW 473

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIAS 553
           GK+LNV  A  +K+  N+++M +V ALG      +    LRY KVIIM DADVDG+HI +
Sbjct: 474 GKMLNVEKARIDKVYGNEKLMPVVTALGTSIGDDFDISKLRYGKVIIMADADVDGSHIRT 533

Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613
           LLLTFF++ M  LIE++H+F+  PPLF++ +  K  YA  +E + K ++E    GK K+ 
Sbjct: 534 LLLTFFFRFMRPLIEEEHVFIAQPPLFKVERNKKVRYAFTDEERDKYIDELSDGGKLKVA 593

Query: 614 ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKF 673
           + R+KGLGEM   QL ET MD  +RT+++V +   +       +    LMG K   R +F
Sbjct: 594 VQRYKGLGEMDPEQLWETTMDPERRTMIKVTMEDAVK----ADEIFTILMGDKVGPRKEF 649

Query: 674 IQERASFIDDVG 685
           I++ A ++ D+ 
Sbjct: 650 IEKNAEYVKDLD 661


>gi|261415262|ref|YP_003248945.1| DNA gyrase, B subunit [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261371718|gb|ACX74463.1| DNA gyrase, B subunit [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 646

 Score =  615 bits (1585), Expect = e-174,   Method: Composition-based stats.
 Identities = 250/652 (38%), Positives = 374/652 (57%), Gaps = 19/652 (2%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           + A  +Y  SSI +LEGLE VR+RP MYIG TD + LHHL  EV+DN++DE +AG+ N I
Sbjct: 9   KKAEADYSGSSITVLEGLEAVRVRPAMYIGSTDIRGLHHLVWEVVDNSVDEALAGFCNHI 68

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           E+S+     + V DNGRGIP + HPK     T+++++T LHAGGKF+NS+Y++S GLHGV
Sbjct: 69  EISILPGNGIRVTDNGRGIPTDIHPK-EKVGTIQVVMTKLHAGGKFNNSSYKVSAGLHGV 127

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+S VNALS++L VTV R   +  Q+F+RG+P  P     +     GT + F PD  IF 
Sbjct: 128 GVSCVNALSNKLIVTVRRNGRVVRQEFARGVPCGPQVDIGESDGTTGTSVEFYPDDTIFS 187

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   +    L    +  A+L   ++   + +++   K    + + F FPGG+  +++   
Sbjct: 188 ETV-YVYDTLATRFRELAFLMSGLRLTLTDERDPEHK----QTDTFCFPGGVSEFVRYVD 242

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           E+R+ + +E            +  +E A+ + +       S+ N + T +GGTH +G + 
Sbjct: 243 EHRTPLFAEPIHLVL---PDGQYPLEVAMWYNDGYQENFFSFVNNVNTYDGGTHVTGFKT 299

Query: 337 ALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           ALTR I K+A+     K+   I SDD+      ++++ + +P+F GQTK KL + +    
Sbjct: 300 ALTRVISKFAQDMPKGKKEAQITSDDIREGLTAVIAIKVSQPQFEGQTKRKLGNSEIAGY 359

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454
           V +A     + Y  +NP     +L+ V   +  R    + R    RK  +    LPGKLA
Sbjct: 360 VASAFGAKLEEYFQENPAAVKIILDKVYNAAVAREAAHRARTLARRKNVLESGGLPGKLA 419

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS       E+FIVEGDSAGGSAK  R+R  QA+LP+RGKILNV  A   ++ + ++I 
Sbjct: 420 DCSSRDPKECEMFIVEGDSAGGSAKMGRSREFQAILPIRGKILNVEKASLHRVLDTEEIQ 479

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           +LV A+G    ++++ E LRY+K+IIMTDADVDG+HI +LLLTFF++ M  LI+  H+FL
Sbjct: 480 NLVNAIGTGIGTEFKIEKLRYDKIIIMTDADVDGSHIQTLLLTFFFRYMRPLIDAGHIFL 539

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL+++  G K  Y  DE  K K++ E     K  + I+RFKGLGEM   QL +T M+
Sbjct: 540 AMPPLYKLKIGQKERYLFDENEKDKVMAEI--EDKKNVAITRFKGLGEMSPEQLNDTTMN 597

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA-SFIDDVG 685
              R L +  +   +          + LMG   + R KFI+  A   ++D+ 
Sbjct: 598 PKTRFLKQCHVEDSV----LADQIFSMLMGEDVEPRRKFIETNAYKVLNDLD 645


>gi|49482258|ref|YP_039482.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49240387|emb|CAG39033.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus MRSA252]
          Length = 643

 Score =  615 bits (1585), Expect = e-174,   Method: Composition-based stats.
 Identities = 250/657 (38%), Positives = 379/657 (57%), Gaps = 20/657 (3%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
            A ++ + +DNY A  I++LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AG
Sbjct: 2   TALSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 61

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           YAN IEV ++ + ++ V DNGRGIPV+   K   +  +E+ILT LHAGGKF    Y++SG
Sbjct: 62  YANQIEVVIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 120

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG SVVNALS +L V V R  TI+ Q + +G+P   L++     +K GT I F+ D
Sbjct: 121 GLHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKAD 179

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            +IF +   ++   L +  +  A+L+  ++     +++         ++ +++ GG+K+Y
Sbjct: 180 GEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEE----NVREDSYHYEGGIKSY 235

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++   EN+  I  E       K       VE AI +       + +Y N I T EGGTHE
Sbjct: 236 VELLNENKEPIHDEPIYIHQSKDDI---EVEIAIQYNSGYATNLLTYANNIHTYEGGTHE 292

Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G + ALTR +  Y   ++  +        +D       I+S+   +P+F GQTKTKL +
Sbjct: 293 DGFKRALTRVLNSYGLSSKIMKEDKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGN 352

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLR 448
            + ++ V+    + F+ +L +NP  A  ++E  ++        ++ +    RK+A+    
Sbjct: 353 SEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVAS 412

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS       E+F+VEGDSAGGS K  R+   QA+LPLRGKILNV  A  ++I 
Sbjct: 413 LPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRIL 472

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           NN +I  ++ A G      +     RY K++IMTDADVDGAHI +LLLTFFY+ M  LIE
Sbjct: 473 NNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 532

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             ++++  PPL+++TQG +  Y +++    K+  E   +   K  I+R+KGLGEM A QL
Sbjct: 533 AGYVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSEL--NPTPKWSIARYKGLGEMNADQL 590

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            ET M+   R LL+V++   +    +   +   LMG   + R +FI++ A +  ++ 
Sbjct: 591 WETTMNPEHRALLQVKLEDAI----EADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 642


>gi|315640352|ref|ZP_07895468.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Enterococcus
           italicus DSM 15952]
 gi|315483888|gb|EFU74368.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Enterococcus
           italicus DSM 15952]
          Length = 649

 Score =  615 bits (1585), Expect = e-174,   Method: Composition-based stats.
 Identities = 247/653 (37%), Positives = 374/653 (57%), Gaps = 24/653 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  YDAS I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AG+A  IEV 
Sbjct: 12  AKEYDASQIQVLEGLEAVRKRPGMYIGSTSSEGLHHLVWEIVDNSIDEALAGFATKIEVV 71

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TV D+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGVG S
Sbjct: 72  VEKDNSITVTDDGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 130

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  L V V ++  ++ Q++ RG  +S L    +  ++ GT + F PDP+IF +  
Sbjct: 131 VVNALSTTLDVKVFKEGKVYFQEYHRGAVVSDLTIIGET-DRHGTEVHFVPDPEIFRETT 189

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F+  +L    +  A+L+  +       ++        E   F+F GG+K+Y++     +
Sbjct: 190 TFEFEKLATRVRELAFLNRGLHISIEDKRK-----EEAEVRAFHFEGGIKSYVEHLNATK 244

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
           +++  E    +  ++     +VE ++ + +       S+ N I T EGGTHESG + ALT
Sbjct: 245 TVLFPEPIYLEGNQQDI---SVEVSMQYTDGYHTNLLSFANNIHTYEGGTHESGFKTALT 301

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA   +  R    ++  +D+      ++S+   +P+F GQTKTKL + + +   +
Sbjct: 302 RVINDYARKQKLMRESDENLSGEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRTVTD 361

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
               + F  +L++NP    +++E  +  S+ RL  ++ RE   RK A+    LPGKLADC
Sbjct: 362 RLFSEHFAKFLMENPTVGRQIVEKGLLASKARLAAKRAREVTRRKGALEISSLPGKLADC 421

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S   A   ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  +KI  N++I  L
Sbjct: 422 SSREADKCELFIVEGDSAGGSAKQGRDREFQAILPIRGKILNVEKASMDKILANEEIRSL 481

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    + +     RY K++IMTDADVDGAHI +LLLT FY+ M  ++E  ++++  
Sbjct: 482 FTAMGTGFGADFDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYVYIAQ 541

Query: 577 PPLFRITQGTKSVYAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           PPL+ + QG    Y       E+  ++I+         K  + R+KGLGEM   QL ET 
Sbjct: 542 PPLYGVKQGKNITYVQPGKQAEDELKQIVSSLPAS--PKPNVQRYKGLGEMDDHQLWETT 599

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           MD   R +L+V ++  +    +       LMG + + R  FI+E A ++ ++ 
Sbjct: 600 MDPENRMMLQVSVDDAI----EADQVFEMLMGDRVEPRRAFIEENAHYVKNLD 648


>gi|123969376|ref|YP_001010234.1| DNA gyrase subunit B [Prochlorococcus marinus str. AS9601]
 gi|123199486|gb|ABM71127.1| DNA gyrase, subunit B [Prochlorococcus marinus str. AS9601]
          Length = 655

 Score =  615 bits (1585), Expect = e-174,   Method: Composition-based stats.
 Identities = 259/657 (39%), Positives = 378/657 (57%), Gaps = 15/657 (2%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           S    +   S++Y A  I++LEGLEPVR RPGMYIG T  + LHHL  EV+DN++DE +A
Sbjct: 2   SEDKRSNKISNDYGADQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+ + IE+ L  +G   + DNGRGIP + HP+   KS LE +LT LHAGGKF +  Y++S
Sbjct: 62  GHCDHIEIVLRADGSAFISDNGRGIPTDIHPR-TGKSALETVLTVLHAGGKFGSGGYKVS 120

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS--PLEKKEKVRNKRGTRITF 209
           GGLHGVGISVVNALS+ ++VTV R  + F+Q+F +G+       +K+     K+GT I F
Sbjct: 121 GGLHGVGISVVNALSEWVNVTVYRDGSEFNQRFEKGVSKGELQAKKQTGKPFKKGTSICF 180

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +PD  IF     F+ A L    +  AYL+G VK  +  ++         E E + + GG+
Sbjct: 181 KPDKTIFSGGIEFEYALLSSRLRELAYLNGGVKIVFRDERNQLSDGSFKE-EIYLYQGGI 239

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGT 329
           K Y++     +  I  EI    ++K+  +             +  I  + N I T +GGT
Sbjct: 240 KEYVEYMNAEKDSIHPEIIYVDSQKENVY-VEAALQWCSDVYSDNILGFANNIRTIDGGT 298

Query: 330 HESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  GL+  LTR     A+    ++ I  ++  +++      +LSV + +PEF GQTKTKL
Sbjct: 299 HIEGLKTVLTRTFNNLAKKRGKRKDIEKNLAGENIREGLTVVLSVKVPDPEFEGQTKTKL 358

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
            + + +  V++ + +    Y+  NP     +LE  I+        R+ RE V RK+ +  
Sbjct: 359 GNTEVRGIVDSLIGEALTKYMEFNPAILDLILEKAIQSFNAAEAARRARELVRRKSVLES 418

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADCS      +E++IVEGDSAGGSAKQ R+R+ QA+LPLRGKILN+      K
Sbjct: 419 STLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRNFQAILPLRGKILNIEKTDDTK 478

Query: 507 IRNNQQIMDLVQALGCRTR-SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           I  N +I  L+ ALG   +  ++ E  LRY +V+IMTDADVDGAHI +LLLTFFY+   +
Sbjct: 479 IYKNTEIQSLITALGLGIKGEEFDESSLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRE 538

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           L+E+  +++  PPL+++ +G    Y ++E   +  ++ F ++      I RFKGLGEM+ 
Sbjct: 539 LVEKGFIYIACPPLYKVERGKNHNYCYNENQLKDTIQGFGENAN--YNIQRFKGLGEMMP 596

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            QL +T M+   R + RVEI   L    +     N LMG K   R +FI+  +  +D
Sbjct: 597 KQLWDTTMNPQTRMMKRVEIEDAL----EADRIFNILMGDKVAPRREFIETHSGNLD 649


>gi|170742474|ref|YP_001771129.1| DNA topoisomerase IV subunit B [Methylobacterium sp. 4-46]
 gi|168196748|gb|ACA18695.1| DNA topoisomerase IV, B subunit [Methylobacterium sp. 4-46]
          Length = 682

 Score =  615 bits (1585), Expect = e-174,   Method: Composition-based stats.
 Identities = 395/690 (57%), Positives = 512/690 (74%), Gaps = 14/690 (2%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           M+D + DLF+   P ++ +    +   + P   A  + +A   YDAS+I +LEGLEPVR 
Sbjct: 1   MSDPARDLFA---PGAKPAPGDPESGAKRPRPVAVPSPAAEAGYDASAIEVLEGLEPVRR 57

Query: 61  RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+A  IEV L+  G L+V DNGRGIPV+ 
Sbjct: 58  RPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHATFIEVELEEGGILSVTDNGRGIPVDP 117

Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
           HPKFP +S LE+I+TTLHAGGKFD+  YE SGGLHGVG+SVVNALSD L V VAR  T++
Sbjct: 118 HPKFPGRSALEVIMTTLHAGGKFDSKVYETSGGLHGVGVSVVNALSDRLEVEVARNQTLY 177

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
            Q FSRG+P   LE+  +V+N+RGT++ F PDP+IFG    FD  RL KM +SKAYL G 
Sbjct: 178 RQHFSRGVPQGGLEQVGRVQNRRGTKVRFHPDPQIFGA-LAFDPRRLFKMARSKAYLFGG 236

Query: 241 VKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
           V+  W C   + E   G+P +    FP GL+ YL  +++ + L++  +FTGK  + G+H 
Sbjct: 237 VEIRWRCAPALVEGIEGVPAEAVHRFPAGLRDYLAQEIDGKELVTDALFTGKVTRPGSH- 295

Query: 300 GTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISI 357
           G++EWA+AW   ++   +SYCNT+ T EGGTHESGLR+AL R ++ +AE     KR  ++
Sbjct: 296 GSLEWAVAWLTHDDGFSSSYCNTVPTPEGGTHESGLRIALLRALRDHAERVGQVKRVQAV 355

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
            +DD+M +   +LSVFIREPEF GQTK KL +L+A R VE A+RD FDH+L  +P +A K
Sbjct: 356 TTDDVMATCASMLSVFIREPEFQGQTKDKLATLEASRIVEAAVRDAFDHWLAASPTQANK 415

Query: 418 LLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           LL+WVI+R+EERLRRR+++EV RKTA RKLRLPGKLADCS+  A G+E+FIVEGDSAGGS
Sbjct: 416 LLDWVIDRAEERLRRRQEKEVARKTATRKLRLPGKLADCSKAGAAGSEIFIVEGDSAGGS 475

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AKQAR+R++QAVLPLRGKILNVASA  +K+  NQ + DL QALGC T S YR++DLRYEK
Sbjct: 476 AKQARDRASQAVLPLRGKILNVASASRDKLGANQLLSDLTQALGCGTGSHYRDDDLRYEK 535

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           VIIMTDADVDGAHIASLL+TFFY++M  LIE+ HL+L  PPL+R++QG K+ YA D+ HK
Sbjct: 536 VIIMTDADVDGAHIASLLITFFYRQMPKLIEKGHLYLAVPPLYRLSQGAKTAYARDDRHK 595

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           +++++   K+G  K+EI RFKGLGEM+  QLKET MD +KRTLLRVE+     + + T D
Sbjct: 596 EQLIKTVFKNG--KVEIGRFKGLGEMMPGQLKETTMDPSKRTLLRVEVLD--EAREATGD 651

Query: 658 SINKLMGTKADERFKFIQERASFID--DVG 685
           ++ +LMG K + RF FI ERA F D  ++ 
Sbjct: 652 AVERLMGNKPEARFAFISERAVFADEAELD 681


>gi|257866280|ref|ZP_05645933.1| DNA gyrase B subunit [Enterococcus casseliflavus EC30]
 gi|257873204|ref|ZP_05652857.1| DNA gyrase B subunit [Enterococcus casseliflavus EC10]
 gi|257800238|gb|EEV29266.1| DNA gyrase B subunit [Enterococcus casseliflavus EC30]
 gi|257807368|gb|EEV36190.1| DNA gyrase B subunit [Enterococcus casseliflavus EC10]
          Length = 649

 Score =  615 bits (1585), Expect = e-173,   Method: Composition-based stats.
 Identities = 248/653 (37%), Positives = 382/653 (58%), Gaps = 24/653 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  YDAS I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AG+A+ I+V 
Sbjct: 12  AKAYDASQIQVLEGLEAVRKRPGMYIGSTSSEGLHHLVWEIVDNSIDEALAGFASSIQVI 71

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGVG S
Sbjct: 72  IEPDNSITVVDDGRGIPVDIQAK-TGRPAVETVFTILHAGGKFGGGGYKVSGGLHGVGSS 130

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  L V V ++  ++ Q++ RG  +  L+  ++  ++ GT + F PDP+IF +  
Sbjct: 131 VVNALSTTLDVKVYKEGKVYYQEYHRGAVVDDLKVIDET-DRHGTTVHFVPDPEIFTETT 189

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F+  +L    +  A+L+  +K      +E       P  +E+++ GG+K+Y++    ++
Sbjct: 190 VFNFDKLATRVRELAFLNRGLKISIEDKREEK-----PVLKEYHYDGGIKSYVEHLNASK 244

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
           ++I  +    + E++G    TVE ++ + +       S+ N I T EGGTHE G + ALT
Sbjct: 245 TVIFPDPIYLEGEQQGI---TVEVSMQYTDSYHSNLLSFANNIHTYEGGTHEFGFKTALT 301

Query: 340 RGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA  ++  +    ++  +D+      ++S+   +P+F GQTKTKL + + +   +
Sbjct: 302 RVINDYARKSKLMKENDENLTGEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRTVTD 361

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADC 456
               + F  +L++NP    +++E  +  S+ R   ++ RE+  RK A+    LPGKLADC
Sbjct: 362 RLFSEHFTKFLMENPNVGRQVVEKGLLASKARQAAKRAREMTRRKGALEISNLPGKLADC 421

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S N     ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  +KI  N++I  L
Sbjct: 422 SSNDPEKCELFIVEGDSAGGSAKQGRSREFQAILPIRGKILNVEKASMDKILANEEIRSL 481

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    + +     RY K++IMTDADVDGAHI +LLLT FY+ M  ++E  ++++  
Sbjct: 482 FTAMGTGFGADFDVAKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYVYIAQ 541

Query: 577 PPLFRITQGTKSVYAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           PPL+ + QG    Y       E+  +  +E        K  + R+KGLGEM   QL ET 
Sbjct: 542 PPLYGVKQGKNIHYIQPGKNAEQDLKNTIESLPAT--PKPTVQRYKGLGEMDDHQLWETT 599

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           MD   R +LRV ++  +    +       LMG + + R  FI+E A ++ ++ 
Sbjct: 600 MDPENRMMLRVSVDDAI----EADQIFEMLMGDRVEPRRAFIEENAHYVKNLD 648


>gi|218531372|ref|YP_002422188.1| DNA topoisomerase IV subunit B [Methylobacterium chloromethanicum
           CM4]
 gi|254562291|ref|YP_003069386.1| DNA topoisomerase IV subunit B [Methylobacterium extorquens DM4]
 gi|218523675|gb|ACK84260.1| DNA topoisomerase IV, B subunit [Methylobacterium chloromethanicum
           CM4]
 gi|254269569|emb|CAX25539.1| DNA topoisomerase IV, subunit B [Methylobacterium extorquens DM4]
          Length = 685

 Score =  615 bits (1585), Expect = e-173,   Method: Composition-based stats.
 Identities = 396/690 (57%), Positives = 500/690 (72%), Gaps = 11/690 (1%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           M+D + DLF          +E+ ++   +  SPA A ++A   YDAS+I +LEGLEPVR 
Sbjct: 1   MSDPARDLFGPGAKPPPAEAERRRRLTPVAPSPAPAPETAEAGYDASAIEVLEGLEPVRR 60

Query: 61  RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           RPGMYIGGTDE+ALHHLF+EVIDN+MDE +AG+A+ IEV L+ +G L V DNGRGIPV+ 
Sbjct: 61  RPGMYIGGTDERALHHLFAEVIDNSMDEAVAGHASFIEVELEESGSLVVTDNGRGIPVDP 120

Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
           HPKFP KS LE+I+TTLHAGGKFD+  YE SGGLHGVGISVVNALSD L V VAR  T++
Sbjct: 121 HPKFPGKSALEVIMTTLHAGGKFDSKVYETSGGLHGVGISVVNALSDVLEVEVARNQTLY 180

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
            Q FSRG     LE   +V+N+RGTR+ F PD +IFG    FD  RL KM +SKAYL G 
Sbjct: 181 RQCFSRGHAQGSLETIGRVQNRRGTRVRFHPDAQIFGS-LKFDPRRLFKMARSKAYLFGG 239

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFY-FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
           V+  W C   + E       E  + FPGGL  YL   +E + L+   IF+GK  K G+H 
Sbjct: 240 VEIRWRCAPALLEGLEDVPAEAVHRFPGGLSDYLARDIEGKELVLDSIFSGKITKPGSH- 298

Query: 300 GTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISI 357
           G++EWA+AW   ++    SYCNTI T EGGTHE+GLRVAL R ++++AE     KR  ++
Sbjct: 299 GSLEWAVAWTVADDGVSHSYCNTIPTPEGGTHEAGLRVALLRALREHAERVNQAKRMTAV 358

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
            +DD+M +   +LSVFIREPEF GQTK KL +++A R VE A+RD FDH+L  +P +A K
Sbjct: 359 TTDDVMATCASMLSVFIREPEFQGQTKDKLATVEASRIVETAIRDAFDHWLAASPAQANK 418

Query: 418 LLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           LL+WVI+R+EERLRRR+++EV RK+A RKLRLPGKLADCS     G+E+FIVEGDSAGGS
Sbjct: 419 LLDWVIDRAEERLRRRQEKEVARKSATRKLRLPGKLADCSAAGTVGSEIFIVEGDSAGGS 478

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AKQAR+R+ QAVLPLRGKILNVASA  +K+  NQ I DL  ALGC T + +RE DLRY++
Sbjct: 479 AKQARDRATQAVLPLRGKILNVASASRDKLGANQLISDLTLALGCGTGANFREADLRYDR 538

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           VIIMTDADVDGAHIASLL+TFFY++M  LI++ HL+L  PPL+RI+QG KS YA D+  K
Sbjct: 539 VIIMTDADVDGAHIASLLITFFYRQMPKLIDKGHLYLAIPPLYRISQGAKSAYARDDADK 598

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           ++I++   K+G  K+EI RFKGLGEM+ +QLKET MD  KRTLLRV I     + + T D
Sbjct: 599 ERIIKTVFKNG--KVEIGRFKGLGEMMPAQLKETTMDPKKRTLLRVAILD--EARESTGD 654

Query: 658 SINKLMGTKADERFKFIQERASFID--DVG 685
           ++ +LMG K + RF FI ERASF D  ++ 
Sbjct: 655 TVERLMGNKPEARFAFITERASFADGTELD 684


>gi|222150258|ref|YP_002559411.1| DNA gyrase subunit B [Macrococcus caseolyticus JCSC5402]
 gi|222119380|dbj|BAH16715.1| DNA gyrase subunit B [Macrococcus caseolyticus JCSC5402]
          Length = 642

 Score =  615 bits (1585), Expect = e-173,   Method: Composition-based stats.
 Identities = 254/648 (39%), Positives = 376/648 (58%), Gaps = 20/648 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           D Y A  I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGYA+ +EV++
Sbjct: 10  DQYGADQIQVLEGLEAVRKRPGMYIGSTASKGLHHLVWEIVDNSIDEALAGYADHVEVTI 69

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + + ++ V DNGRGIPV+   K   +  +E+ILT LHAGGKF    Y++SGGLHGVG SV
Sbjct: 70  EEDNWIKVTDNGRGIPVDIQKKM-GRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGSSV 128

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  L V V +   I+ Q + RG+P   L+   +  +K GT I F+ D +IF +   
Sbjct: 129 VNALSSTLEVYVHKDGKIYHQAYHRGVPAFDLKVIGET-DKTGTVIRFKADSEIFTETTE 187

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L K  +  A+L+  +K     ++E  E       + +++ GG+K+Y++   +++ 
Sbjct: 188 YEYEILQKRIRELAFLNKGIKLEIKDEREQDEI----RHDVYHYEGGIKSYVELLNKSKE 243

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340
            +  E       +       VE +I +         SY N I T EGGTHE G + ALTR
Sbjct: 244 TLFPEPIYIHDNRDEI---EVEISIQYNNGYSTNLLSYANNIHTYEGGTHEDGFKRALTR 300

Query: 341 GIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  Y    +  +     +  +D+      I+S+    P+F GQTKTKL + + ++  +N
Sbjct: 301 VINSYGVKNKLIKEADEKLSGEDVREGITAIVSIKHGNPQFEGQTKTKLGNTEVRQITDN 360

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
              + F+ +L++NP  A  ++E  I  S  RL  +K RE   RK+ +    LPGKLADCS
Sbjct: 361 LFAENFERFLLENPPIARIIVEKGIMASRARLAAKKAREVTRRKSGLEISSLPGKLADCS 420

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +EL+IVEGDSAGGSAK  R+   QA+LPLRGKILNV  A  ++I  N +I  ++
Sbjct: 421 SKDPSISELYIVEGDSAGGSAKSGRDSKTQAILPLRGKILNVEKARLDRILGNNEIRSMI 480

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G     ++     RY K++IMTDADVDGAHI +LLLTFFY+ M  L+E  ++++  P
Sbjct: 481 TAMGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLLEAGYVYIAQP 540

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PLF++ QG K  Y ++E    K+ +E       K +++R+KGLGEM A QL ET M+   
Sbjct: 541 PLFKVEQGKKKYYVYNERELDKLRKELPTT--PKWQLARYKGLGEMNADQLWETTMNPEH 598

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           R++L+V ++  +    +  +    LMG   + R  FI+E A +  +V 
Sbjct: 599 RSMLQVTLSDAI----EADEVFEMLMGDVVEHRRTFIEENAEYA-NVD 641


>gi|257875897|ref|ZP_05655550.1| DNA gyrase B subunit [Enterococcus casseliflavus EC20]
 gi|257810063|gb|EEV38883.1| DNA gyrase B subunit [Enterococcus casseliflavus EC20]
          Length = 649

 Score =  615 bits (1585), Expect = e-173,   Method: Composition-based stats.
 Identities = 248/653 (37%), Positives = 382/653 (58%), Gaps = 24/653 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  YDAS I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AG+A+ I+V 
Sbjct: 12  AKAYDASQIQVLEGLEAVRKRPGMYIGSTSSEGLHHLVWEIVDNSIDEALAGFASSIQVI 71

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGVG S
Sbjct: 72  IEPDNSITVVDDGRGIPVDIQAK-TGRPAVETVFTILHAGGKFGGGGYKVSGGLHGVGSS 130

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  L V V ++  ++ Q++ RG  +  L+  ++  ++ GT + F PDP+IF +  
Sbjct: 131 VVNALSTTLDVKVYKEGKVYYQEYHRGAVVDDLKVIDET-DRHGTTVHFVPDPEIFTETT 189

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F+  +L    +  A+L+  +K      +E       P  +E+++ GG+K+Y++    ++
Sbjct: 190 VFNFDKLATRVRELAFLNRGLKISIEDKREEK-----PVLKEYHYDGGIKSYVEHLNASK 244

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
           ++I  +    + E++G    TVE ++ + +       S+ N I T EGGTHE G + ALT
Sbjct: 245 TVIFPDPIYLEGEQQGI---TVEVSMQYTDSYHSNLLSFANNIHTYEGGTHEFGFKTALT 301

Query: 340 RGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA  ++  +    ++  +D+      ++S+   +P+F GQTKTKL + + +   +
Sbjct: 302 RVINDYARKSKLMKENDENLTGEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRTVTD 361

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADC 456
               + F  +L++NP    +++E  +  S+ R   ++ RE+  RK A+    LPGKLADC
Sbjct: 362 RLFSEHFTKFLMENPNVGRQVVEKGLLASKARQAAKRAREMTRRKGALEISNLPGKLADC 421

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S N     ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  +KI  N++I  L
Sbjct: 422 SSNDPEKCELFIVEGDSAGGSAKQGRSREFQAILPIRGKILNVEKASMDKILANEEIRSL 481

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    + +     RY K++IMTDADVDGAHI +LLLT FY+ M  ++E  ++++  
Sbjct: 482 FTAMGTGFGADFDVAKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYVYIAQ 541

Query: 577 PPLFRITQGTKSVYAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           PPL+ + QG    Y       E+  +  +E        K  + R+KGLGEM   QL ET 
Sbjct: 542 PPLYGVKQGKNIHYIQPGKNAEQDLKNTIESLPAT--PKPSVQRYKGLGEMDDHQLWETT 599

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           MD   R +LRV ++  +    +       LMG + + R  FI+E A ++ ++ 
Sbjct: 600 MDPENRMMLRVSVDDAI----EADQIFEMLMGDRVEPRRAFIEENAHYVKNLD 648


>gi|261419951|ref|YP_003253633.1| DNA topoisomerase IV subunit B [Geobacillus sp. Y412MC61]
 gi|319766765|ref|YP_004132266.1| DNA topoisomerase IV, B subunit [Geobacillus sp. Y412MC52]
 gi|261376408|gb|ACX79151.1| DNA topoisomerase IV, B subunit [Geobacillus sp. Y412MC61]
 gi|317111631|gb|ADU94123.1| DNA topoisomerase IV, B subunit [Geobacillus sp. Y412MC52]
          Length = 645

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 249/656 (37%), Positives = 363/656 (55%), Gaps = 34/656 (5%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            + A+  Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AGY N 
Sbjct: 2   AKRATYEYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGYGNY 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V +  +  +TV+D GRG+PV  H     K T E+ILT LHAGGKF    Y+ SGGLHG
Sbjct: 62  ILVQIHKDNSITVLDEGRGMPVGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHG 119

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS+ L VT+ R   I+ Q+F  G       +K    NK GT I F+PDP IF
Sbjct: 120 VGASVVNALSEWLVVTIHRDGFIYRQRFEHGGKPVTTLEKIGTTNKTGTIIQFKPDPTIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                FD   L +  +  A+L   +K     ++          +E F++  G++ ++   
Sbjct: 180 STTV-FDYETLSERLRESAFLLKGLKIELVDER-------TGMREVFHYENGIEAFVAYL 231

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335
            E + ++         E+ G     VE+A  + +   E   S+ N + T +GGTHE+G +
Sbjct: 232 NEEKDVLHPV-VYFAGEQNGI---EVEFAFQFHDGYSENVLSFVNNVRTKDGGTHEAGAK 287

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLD 391
            A+TR   +YA       ++  ++   D+      ++SV I E   +F GQTK KL + +
Sbjct: 288 TAMTRVFNEYARRVGLLKEKDKNLEGSDIREGLSAVVSVRIPEHLLQFEGQTKGKLGTSE 347

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR--- 448
           A+  V+  + +   ++L +NP  +  L++  I   + R   RK RE  R    RK +   
Sbjct: 348 ARSAVDAVVSEQLMYFLQENPDVSAMLIKKAIRAYQAREAARKAREEARSGKKRKGKEAL 407

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           L GKL           EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I 
Sbjct: 408 LSGKLTPAQGRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLGDIL 467

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            N++I  ++ A+G    + +  +D+ Y+KVIIMTDAD DGAHI  LLLTFFY+ M  LIE
Sbjct: 468 KNEEINTIIHAIGGGVGADFSLDDVNYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIE 527

Query: 569 QKHLFLISPPLFRITQ--GTKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
              +++  PPL++I++  G   +  YA  +E  ++I+++  +       I R+KGLGEM 
Sbjct: 528 AGKVYIALPPLYKISKKSGKNEIVEYAWTDEQLKEIMKKMGR----GYTIQRYKGLGEMN 583

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           A QL ET M+   RTL+RV I          +  +  LMG K + R K+I+   +F
Sbjct: 584 ADQLWETTMNPQTRTLIRVRIED----AARAERRVTTLMGDKVEPRRKWIETHVAF 635


>gi|295401842|ref|ZP_06811806.1| DNA topoisomerase IV, B subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312111016|ref|YP_003989332.1| DNA topoisomerase IV subunit beta [Geobacillus sp. Y4.1MC1]
 gi|294976096|gb|EFG51710.1| DNA topoisomerase IV, B subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311216117|gb|ADP74721.1| DNA topoisomerase IV, B subunit [Geobacillus sp. Y4.1MC1]
          Length = 656

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 247/650 (38%), Positives = 360/650 (55%), Gaps = 34/650 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AGY N I V + 
Sbjct: 8   EYNDDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGYGNYILVKIH 67

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV+D GRG+P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 68  KDNSVTVLDEGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 125

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+ L VT+ R   I+ Q+F  G       +K    NK GT I F+PDP IF     F
Sbjct: 126 NALSEWLVVTIHRDGFIYQQRFENGGKPVTTLEKIGTTNKTGTIIQFKPDPAIFSTTT-F 184

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L +  +  A+L   +K     ++           + F++  G+K +++   E++ +
Sbjct: 185 NYETLSERLRESAFLLKGLKIELIDER-------TGMSDVFHYENGIKAFVEYLNEDKDV 237

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           +   +   + E+ G     VE+A  + +   E   S+ N + T +GGTHE+G + A+TR 
Sbjct: 238 LHPVV-YFEGEQNGI---EVEFAFQFNDGYSENVLSFVNNVRTKDGGTHEAGAKTAMTRV 293

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397
             +YA       ++  ++   D+      I+SV I E   +F GQTK KL + +A+  V+
Sbjct: 294 FNEYARKNGLLKEKDKNLEGTDIREGLSAIVSVRIPENLLQFEGQTKGKLGTSEARSAVD 353

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLA 454
             + +   ++L +NP  +T L++  I   + R   RK RE  R    RK     L GKL 
Sbjct: 354 AIVSEHLTYFLQENPDVSTMLIKKAIRAYQAREAARKAREEARSGKKRKGKETVLSGKLT 413

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
                     EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I 
Sbjct: 414 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADILKNEEIN 473

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++ A+G      +  +D+ Y+KVIIMTDAD DGAHI  LLLTFFY+ M  LIE   +++
Sbjct: 474 TIIHAIGGGVGPDFSLDDINYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVYI 533

Query: 575 ISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
             PPL+++++G   K +  YA  +   ++I ++  K       + R+KGLGEM A QL E
Sbjct: 534 ALPPLYKVSKGSGKKEIVEYAWTDAQLKEITKKLGK----GYTVQRYKGLGEMNAEQLWE 589

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           T M+   RTL+RV I          +  +  LMG K + R K+I+   +F
Sbjct: 590 TTMNPETRTLIRVRIED----AARAERRVTTLMGDKVEPRRKWIEANVAF 635


>gi|328956387|ref|YP_004373773.1| DNA gyrase, subunit B [Carnobacterium sp. 17-4]
 gi|328672711|gb|AEB28757.1| DNA gyrase, subunit B [Carnobacterium sp. 17-4]
          Length = 647

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 254/659 (38%), Positives = 384/659 (58%), Gaps = 20/659 (3%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
                + Q  +  YDAS I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +
Sbjct: 4   SEEIKSKQDRAKEYDASQIQVLEGLEAVRKRPGMYIGSTSSEGLHHLVWEIVDNSIDEAL 63

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AG+A+ I + ++ +  +TV+DNGRGIPV+   K   +  LE + T LHAGGKF    Y++
Sbjct: 64  AGFADEINLIIEKDESITVIDNGRGIPVDIQAK-TGRPALETVFTVLHAGGKFGGGGYKV 122

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG SVVNALS  L V V +   I+ Q++++G  +  +E   +  +K GT + F 
Sbjct: 123 SGGLHGVGSSVVNALSITLDVYVHKDGKIYHQQYAQGKVVHDVEVIGET-DKHGTTVHFV 181

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PDP+IF +   F   +L    +  A+L+  +K      +E  EK+       +++ GG+K
Sbjct: 182 PDPEIFKETVEFHFDKLATRVRELAFLNKGLKITVEDKREGKEKFLE-----YHYEGGIK 236

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGT 329
           +Y++   EN++++  E    + E++G    T+E A+   +       S+ N I T EGGT
Sbjct: 237 SYVEFLNENKTVLYDEPIFLEGEQQGI---TLEVAMQHTDGYHNNLLSFANNIHTYEGGT 293

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           HE G + ALTR I  YA+  +   +   ++  +D+      +LS+   +P+F GQTKTKL
Sbjct: 294 HEFGFKTALTRVINDYAKKNKIIKENEENLTGEDVREGLTIVLSIKHPDPQFEGQTKTKL 353

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRK 446
            + +A+   +      FD +L++NP  A +++E  ++        +R +    +K+ +  
Sbjct: 354 GNSEARTITDRLFSAHFDKFLMENPQVARQIVEKGLLAARARLAAKRAREVTRKKSGLEI 413

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADCS      +ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++
Sbjct: 414 SNLPGKLADCSSKDPTISELFIVEGDSAGGSAKQGRSRLFQAILPIRGKILNVEKATLDR 473

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           I  N++I  L  A+G    + +     RY K++IMTDADVDGAHI +LLLT FY+ M  +
Sbjct: 474 ILANEEIRSLFTAMGTGFGNDFDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPV 533

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           +E  ++++  PPL+++ QG K VY   EE     L+E       K  I R+KGLGEM A 
Sbjct: 534 VEAGYVYIAQPPLYQVRQGKKMVYLDSEEELDNYLKEIPLS--PKPVIQRYKGLGEMDAE 591

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           QL ET M+   R +L+V ++  + + K        LMG + + R  FI+E A ++ ++ 
Sbjct: 592 QLWETTMNPENRRMLQVTVDDAIEADKSCD----MLMGDRVEPRRLFIEENARYVQNLD 646


>gi|315644305|ref|ZP_07897475.1| DNA gyrase, B subunit [Paenibacillus vortex V453]
 gi|315280680|gb|EFU43969.1| DNA gyrase, B subunit [Paenibacillus vortex V453]
          Length = 634

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 264/647 (40%), Positives = 381/647 (58%), Gaps = 22/647 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            YD + I++LEGLE VR RPGMYIG T  K LHHL  EV+DN++DE +AG  + IE+ + 
Sbjct: 5   TYDENQIQVLEGLEAVRKRPGMYIGSTSAKGLHHLVWEVVDNSIDEAMAGICDHIEIIVH 64

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV+DNGRGIPV  + K   KSTLE+++T LHAGGKF    Y++SGGLHGVG+SVV
Sbjct: 65  EDNSVTVIDNGRGIPVGENAKL-KKSTLEVVMTVLHAGGKFGGGGYKVSGGLHGVGVSVV 123

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS ++ V V R   I+ Q++ RG+P   ++      ++ GT +TF PDP+IF +   +
Sbjct: 124 NALSSKVVVQVKRDGHIYQQEYHRGVPQYDIKVIGD-SDEHGTTVTFLPDPEIFTETTVY 182

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   LL   +  A+L+  +    + ++           + F + GG+  Y++   E +  
Sbjct: 183 EYTTLLTRIRELAFLNKGIALTLTDER-------TGASDFFKYEGGIIEYVKFLNEKKEA 235

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +  +    +  +       VE ++ + +     I S+ N I T EGGTHESG + ALTR 
Sbjct: 236 LHEDPIYVEGSRDNIQ---VEVSLQYNDSYTENIYSFANNINTHEGGTHESGFKSALTRI 292

Query: 342 IKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  YA  T   +  +     DD+      I+SV + EP+F GQTKTKL + + +  VE+ 
Sbjct: 293 INDYARKTGMIKDNNNNLSGDDVREGLTAIISVKVPEPQFEGQTKTKLGNSEVRGIVESL 352

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458
             +    +L +NP  + ++LE  ++ S  R   RK R    RK+A+    LPGKLADCS 
Sbjct: 353 FAEKLQEFLQENPSVSRRILEKALQASRAREAARKAREMTRRKSALEVSALPGKLADCSS 412

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
             A  +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  ++I +N +I  ++ 
Sbjct: 413 KDASISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDRILSNAEIRAIIT 472

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG      +     RY K+IIMTDADVDGAHI +LLLTFFY+ M  L+E  ++++  PP
Sbjct: 473 ALGTGIAEDFDLSKARYHKIIIMTDADVDGAHIRTLLLTFFYRYMRKLVEAGYIYIAQPP 532

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           LF++ +     YA  E+ + +I++EF ++   KI + R+KGLGEM A QL ET MD   R
Sbjct: 533 LFKVERNKVIRYAGSEKERDEIIKEFGEN--VKINVQRYKGLGEMNAGQLWETTMDPESR 590

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T+L+V I   +          + LMG   + R  FIQE A  + ++ 
Sbjct: 591 TMLQVTIEDAI----LADTLFDTLMGDNVEPRRDFIQEHAKTVRNLD 633


>gi|293497972|ref|ZP_06665826.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 58-424]
 gi|291096903|gb|EFE27161.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 58-424]
          Length = 644

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 250/657 (38%), Positives = 378/657 (57%), Gaps = 20/657 (3%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
            A ++ + +DNY A  I++LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AG
Sbjct: 3   TALSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 62

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           YAN IEV ++ + ++ V DNGRGIPV    K   +  +E+ILT LHAGGKF    Y++SG
Sbjct: 63  YANQIEVVIEKDNWIKVTDNGRGIPVGIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 121

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG SVVNALS +L V V R  TI+ Q + +G+P   L++     +K GT I F+ D
Sbjct: 122 GLHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKAD 180

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            +IF +   ++   L +  +  A+L+  ++     +++         ++ +++ GG+K+Y
Sbjct: 181 GEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEE----NVREDSYHYEGGIKSY 236

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++   EN+  I  E       K       VE AI +       + +Y N I T EGGTHE
Sbjct: 237 VELLNENKEPIHDEPIYIHQSKDDI---EVEIAIQYNSGYATNLLTYANNIHTYEGGTHE 293

Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G + ALTR +  Y   ++  +        +D       I+S+   +P+F GQTKTKL +
Sbjct: 294 DGFKRALTRVLNSYGLSSKIMKEDKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGN 353

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLR 448
            + ++ V+    + F+ +L +NP  A  ++E  ++        ++ +    RK+A+    
Sbjct: 354 SEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVAS 413

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS       E+F+VEGDSAGGS K  R+   QA+LPLRGKILNV  A  ++I 
Sbjct: 414 LPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRIL 473

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           NN +I  ++ A G      +     RY K++IMTDADVDGAHI +LLLTFFY+ M  LIE
Sbjct: 474 NNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 533

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             ++++  PPL+++TQG +  Y +++    K+  E   +   K  I+R+KGLGEM A QL
Sbjct: 534 AGYVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSEL--NPTPKWSIARYKGLGEMNADQL 591

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            ET M+   R LL+V++   +    +   +   LMG   + R +FI++ A +  ++ 
Sbjct: 592 WETTMNPEHRALLQVKLEDAI----EADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 643


>gi|91215255|ref|ZP_01252227.1| DNA gyrase, B subunit [Psychroflexus torquis ATCC 700755]
 gi|91186860|gb|EAS73231.1| DNA gyrase, B subunit [Psychroflexus torquis ATCC 700755]
          Length = 655

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 258/661 (39%), Positives = 393/661 (59%), Gaps = 24/661 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +   +NY A SI+ LEG+E VRMRP MYIG   E+ LHHL  EV+DN++DE + GY 
Sbjct: 10  MSEEVKKNNYSADSIQALEGMEHVRMRPSMYIGDVGERGLHHLVYEVVDNSIDEAMGGYC 69

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I++ ++ +G +T +DNGRGIP++ H K    S LE+++T + AGGKFD  +Y++SGGL
Sbjct: 70  DKIDLVINEDGSVTTLDNGRGIPIDLHKK-EGVSALEVVMTKIGAGGKFDKDSYKVSGGL 128

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS +LH  V +   ++ Q++ RG  + P++        +GT ITF+PD +
Sbjct: 129 HGVGVSVVNALSVKLHARVFKDGKVWEQEYERGKAIYPVKPTGDT-EHKGTEITFKPDSE 187

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   F    L K  +  +YL+  ++      ++  +      ++EFY   GLK +++
Sbjct: 188 IFQESVEFKYETLAKRLRELSYLNKGIRISIIDKRQTNDDG-EYRQDEFYSEEGLKEFIR 246

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333
              +NR  I +++ + ++EK       VE A+ +     E    Y N I T EGGTH SG
Sbjct: 247 FIDQNREPIITDVISMESEKNNIP---VEVAMVYNNSYSENLHSYVNNINTHEGGTHLSG 303

Query: 334 LRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R  LT  +KKYA+ +    K    I  DD       I+SV +  P+F GQTKTKL + +
Sbjct: 304 FRRGLTATLKKYADNSGLLDKLKFEITGDDFREGLTAIVSVKVANPQFEGQTKTKLGNRE 363

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLP 450
               V  A+ +  + YL +NP +A  +++ V+  ++ R   +K RE+  RKT +    LP
Sbjct: 364 LTSAVSQAVTEMLEIYLEENPNDAKTIVQKVMLAAQARHAAKKAREMVQRKTVMSGGGLP 423

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL+DCS+      E+F+VEGDSAGG+AKQ R+R  QA+LPLRGKILNV  A   ++  N
Sbjct: 424 GKLSDCSEQDPEACEVFLVEGDSAGGTAKQGRDRKFQAILPLRGKILNVEKAMQHRVFEN 483

Query: 511 QQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           ++I ++  ALG    ++   +      LRY KVIIM DADVDG+HIA+L+LTFF++ M +
Sbjct: 484 EEIKNIYTALGVTIGTEEDSKALNLSKLRYHKVIIMCDADVDGSHIATLILTFFFRYMKE 543

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           LIE  H+++ +PPL+ I +G+K  YA +E+ + +I+ E+    K  + + R+KGLGEM A
Sbjct: 544 LIEASHIYIATPPLYLIKKGSKKRYAWNEKERNEIVNEY----KTSVSVQRYKGLGEMNA 599

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL +T M+   R L RV I      + +     + LMG +   R +FI++ A +  ++ 
Sbjct: 600 IQLWDTTMNPENRILRRVTIVD----MAEADRIFSMLMGDEVPPRREFIEQNAVYA-NID 654

Query: 686 T 686
            
Sbjct: 655 A 655


>gi|294792391|ref|ZP_06757538.1| DNA gyrase, B subunit [Veillonella sp. 6_1_27]
 gi|294456290|gb|EFG24653.1| DNA gyrase, B subunit [Veillonella sp. 6_1_27]
          Length = 645

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 250/650 (38%), Positives = 367/650 (56%), Gaps = 23/650 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
              NY A +I++LEGL+ VR RPGMYIG T  + LHHL  EV+DN++DE +AGYA  IEV
Sbjct: 14  PEQNYGAQNIQVLEGLDAVRKRPGMYIGSTSARGLHHLVYEVVDNSVDEALAGYATHIEV 73

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           S++ +  +TVVD+GRGIP   H      S +E++L  LHAGGKF    Y++SGGLHGVGI
Sbjct: 74  SINPDNSVTVVDDGRGIPTGMHE--SGMSAVELVLMKLHAGGKFGGGGYKVSGGLHGVGI 131

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+   V V++   +    F+RG   S L +  K     GT + F+PD +IF   
Sbjct: 132 SVVNALSEWTKVQVSQNGIVQEISFARGHKTSELHEIGKAEG-TGTTVIFKPDAEIFETT 190

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L    Q  A+L+  ++   S  +        P  E F++ GGL +++    EN
Sbjct: 191 V-FSFDTLKMRLQELAFLNKGLRITLSDLR-----LEEPRVESFHYEGGLVSFITFLNEN 244

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVAL 338
           +  I+  +   +  K       V+ A+ + +   E   S+ N I T +GGTH SG R AL
Sbjct: 245 KEAINPTVINIENTKDDV---VVDVALQYNDSYSENLLSFVNNINTIDGGTHLSGFRAAL 301

Query: 339 TRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y   +   +    ++  +D+      ++SV + EP+F GQTKTKL + + +   
Sbjct: 302 TRTLNDYGRKSGLIKESESNLSGEDVREGLTAVVSVKVLEPQFEGQTKTKLGNSEVKGIT 361

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           +  + +    +  ++P +A K++E   +        R+ +    RK A+    LPGKLAD
Sbjct: 362 DVIVTEGLKTFFEEHPQDAKKIIEKATMASRAREAARKARDLTRRKNALEVSSLPGKLAD 421

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS+     TE+++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI  N +I  
Sbjct: 422 CSEKDTSMTEIYLVEGDSAGGSAKQGRDRRYQAILPLRGKILNVEKARLDKILANNEIRS 481

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ A G     ++     RY K+IIMTDADVDGAHI +LLLTFFY+ M  L+E+ H+++ 
Sbjct: 482 MITAFGTGIGDEFDITKSRYNKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIYIA 541

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL++I +G    Y + +      L+E  + G     I R+KGLGEM   QL ET M+ 
Sbjct: 542 QPPLYQIKKGKSHWYVYSDAELTAKLDEVGRDGT---TIQRYKGLGEMNPEQLWETTMNP 598

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           + RT+L+V +   +    +       LMG K + R KFI++ A ++ ++ 
Sbjct: 599 DNRTILQVSLEDSI----EADKIFTVLMGDKVEPRRKFIEDNAKYVRNLD 644


>gi|167751440|ref|ZP_02423567.1| hypothetical protein EUBSIR_02436 [Eubacterium siraeum DSM 15702]
 gi|167655686|gb|EDR99815.1| hypothetical protein EUBSIR_02436 [Eubacterium siraeum DSM 15702]
          Length = 692

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 242/669 (36%), Positives = 354/669 (52%), Gaps = 33/669 (4%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           N      Y A  I+ILEGLE VR RPGMYIG T E  LHHL  E++DNA+DE +AGY   
Sbjct: 36  NTQVEHAYGADDIQILEGLEAVRKRPGMYIGSTGESGLHHLVYEIVDNAIDEALAGYCTE 95

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V +     + V DNGRGIP   HPK    S   ++ T LHAGGKF    Y++SGGLHG
Sbjct: 96  INVKILPGDVIEVTDNGRGIPTGIHPK-EKISAATVVYTILHAGGKFGGGGYKVSGGLHG 154

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS+ L +TV     I  Q+F  G       K     +K GT++ F+PD  IF
Sbjct: 155 VGASVVNALSEWLELTVYDGKEIHFQRFENGGHYKEQMKVIGTTDKTGTQVRFKPDSTIF 214

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                F    LL   + +A+L+  +K   S  ++  +    P++E   + GG+ +Y++  
Sbjct: 215 HST-EFKYDILLDRLREQAFLNAGLKIVLSDLRDEDK----PKQEVLQYEGGIISYVEWL 269

Query: 277 LENR--SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN--PEITSYCNTILTDEGGTHES 332
            + R    +  ++   +         +VE A  +  +       S+ N I T +GGTHE 
Sbjct: 270 QKKRGAEALHPDVVYIEGLLDNI---SVEIAFQYNTDFNSETFRSFANNIHTVDGGTHEI 326

Query: 333 GLRVALTRGIKKYAELTQN----------------KRAISIISDDLMISAVGILSVFIRE 376
             + AL + I  + +  +                 K  + +  + +  +   ++SV + E
Sbjct: 327 AFKNALNKVINDFVKQYKEQQANNNKKSKKKQDEVKEFVPLSGEAIREAINAVISVKLPE 386

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
            EF GQTK KL + + +  V     +   +Y  ++P     + +  I     R   +K  
Sbjct: 387 CEFEGQTKGKLGNPEVRPVVYKITVEKLTYYFEEHPDTIATIAQKCINAQAARDAAKKAM 446

Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
           E  RK+      LPGKLADCS      TE++IVEGDSAGGSAKQ R+R  QA+LPL GK+
Sbjct: 447 EAKRKSVTDGASLPGKLADCSDTDPEKTEVYIVEGDSAGGSAKQGRDRRFQAILPLWGKM 506

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556
           LNV  A ++K+ NN ++  +V+ALG      +    LRY +V++M DADVDG+HI +LLL
Sbjct: 507 LNVEKARADKVYNNDKLQPVVKALGTGIGEDFDITKLRYGRVVVMADADVDGSHIRTLLL 566

Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616
           TFF++ M  LIE+ H++L  PPLF++ +G K  YA  +E +   + E       K+++ R
Sbjct: 567 TFFFRFMRPLIEEGHVYLAQPPLFKVFRGKKVRYAFSDEERDAYIAELAGESNAKVDVQR 626

Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           +KGLGEM   QL ET MD   RT+++V +           +  + LMG K + R +FI++
Sbjct: 627 YKGLGEMDPEQLWETTMDPAARTMIKVNLED----AAKADEIFSILMGDKVEPRREFIEQ 682

Query: 677 RASFIDDVG 685
            A +  D+ 
Sbjct: 683 NARYAKDLD 691


>gi|297530088|ref|YP_003671363.1| DNA topoisomerase IV subunit beta [Geobacillus sp. C56-T3]
 gi|297253340|gb|ADI26786.1| DNA topoisomerase IV, B subunit [Geobacillus sp. C56-T3]
          Length = 645

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 249/656 (37%), Positives = 362/656 (55%), Gaps = 34/656 (5%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            + A+  Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AGY N 
Sbjct: 2   AKRATYEYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGYGNY 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V +  +  +TV+D GRG+PV  H     K T E+ILT LHAGGKF    Y+ SGGLHG
Sbjct: 62  ILVQIHKDNSITVLDEGRGMPVGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHG 119

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS+ L VT+ R   I+ Q+F  G       +K    NK GT I F+PDP IF
Sbjct: 120 VGASVVNALSEWLVVTIHRDGFIYRQRFEHGGKPVTTLEKIGTTNKTGTIIQFKPDPTIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                FD   L +  +  A+L   +K     ++          +E F++  G++ ++   
Sbjct: 180 STTV-FDYETLSERLRESAFLLKGLKIELVDER-------TGMREVFHYENGIEAFVAYL 231

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335
            E + ++         E+ G     VE+A  + +   E   S+ N + T +GGTHE+G +
Sbjct: 232 NEEKDVLHPV-VYFAGEQNGI---EVEFAFQFHDGYSENVLSFVNNVRTKDGGTHEAGAK 287

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLD 391
            A+TR   +YA       ++  ++   D+      ++SV I E   +F GQTK KL + +
Sbjct: 288 TAMTRVFNEYARRVGLLKEKDKNLEGSDIREGLSAVVSVRIPEHLLQFEGQTKGKLGTSE 347

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR--- 448
           A+  V+  + +   ++L +NP  +  L++  I   + R   RK RE  R    RK +   
Sbjct: 348 ARSAVDAVVSEQLMYFLQENPDVSAMLIKKAIRAYQAREAARKAREEARSGKKRKGKEAL 407

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           L GKL           EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I 
Sbjct: 408 LSGKLTPAQGRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLGDIL 467

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            N++I  ++ A+G    + +  +D+ Y+KVIIMTDAD DGAHI  LLLTFFY+ M  LIE
Sbjct: 468 KNEEINTIIHAIGGGVGADFSLDDVNYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIE 527

Query: 569 QKHLFLISPPLFRITQ--GTKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
              +++  PPL++I++  G   +  YA  +E  ++I ++  +       I R+KGLGEM 
Sbjct: 528 AGKVYIALPPLYKISKKSGKNEIVEYAWTDEQLKEITKKMGR----GYTIQRYKGLGEMN 583

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           A QL ET M+   RTL+RV I          +  +  LMG K + R K+I+   +F
Sbjct: 584 ADQLWETTMNPQTRTLIRVRIED----AARAERRVTTLMGDKVEPRRKWIETHVAF 635


>gi|323439694|gb|EGA97412.1| DNA gyrase subunit B [Staphylococcus aureus O11]
          Length = 644

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 250/657 (38%), Positives = 379/657 (57%), Gaps = 20/657 (3%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
            A ++ + +DNY A  I++LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AG
Sbjct: 3   TALSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 62

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           YAN IEV ++ + ++ V DNGRGIPV+   K   +  +E+ILT LHAGGKF    Y++SG
Sbjct: 63  YANQIEVVIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 121

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG SVVNALS +L V V R  TI+ Q + +G+P   L++     +K GT I F+ D
Sbjct: 122 GLHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKAD 180

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            +IF +   ++   L +  +  A+L+  ++     +++         ++ +++ GG+K+Y
Sbjct: 181 GEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEE----NVREDSYHYEGGIKSY 236

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++   EN+  I  E       K       VE AI +       + +Y N I T EGGTHE
Sbjct: 237 VELLNENKEPIHDEPIYIHQSKDDI---EVEIAIQYNSGYATNLLTYANNIHTYEGGTHE 293

Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G + ALTR +  Y   ++  +        +D       I+S+   +P+F GQTKTKL +
Sbjct: 294 DGFKRALTRVLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGN 353

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLR 448
            + ++ V+    + F+ +L +NP  A  ++E  ++        ++ +    RK+A+    
Sbjct: 354 SEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVAS 413

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS       E+F+VEGDSAGGS K  R+   QA+LPLRGKILNV  A  ++I 
Sbjct: 414 LPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRIL 473

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           NN +I  ++ A G      +     RY K++IMTDADVDGAHI +LLLTFFY+ M  LIE
Sbjct: 474 NNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 533

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             ++++  PPL+++TQG +  Y +++    K+  E   +   K  I+R+KGLGEM A QL
Sbjct: 534 AGYVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSEL--NPTPKWSIARYKGLGEMNADQL 591

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            ET M+   R LL+V++   +    +   +   LMG   + R +FI++ A +  ++ 
Sbjct: 592 WETTMNPEYRALLQVKLEDAI----EADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 643


>gi|302344968|ref|YP_003813321.1| DNA gyrase, B subunit [Prevotella melaninogenica ATCC 25845]
 gi|302149978|gb|ADK96240.1| DNA gyrase, B subunit [Prevotella melaninogenica ATCC 25845]
          Length = 657

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 262/668 (39%), Positives = 383/668 (57%), Gaps = 28/668 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
             N    +NY AS+I++LEGLE VR RP MYIG   EK LHHL +E +DN++DE +AGY 
Sbjct: 2   AENPENENNYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLINETVDNSIDEAMAGYC 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             IEV+++ +  +TV D+GRGIPV+ H K    S LE+++T LHAGGKFD  +Y++SGGL
Sbjct: 62  QNIEVTINEDNSITVEDDGRGIPVDMHEKLHK-SALEVVMTVLHAGGKFDKGSYKVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+S VNALS  +   V R   I+ Q++ +G PL P++   +  +K GTR  F PDP+
Sbjct: 121 HGVGVSCVNALSTHMKSQVFRDGKIYQQEYEKGKPLYPVKVVGET-DKTGTRQQFWPDPE 179

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     +  A + +  +  AYL+  +K   S  +   E       E F+   GLK +++
Sbjct: 180 IFTTTV-YQWAIVARRMRELAYLNAGIKITLSDLRPDPETGKT-RTEVFHAKDGLKEFVR 237

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               +R  +  ++   KTEK+      +E A+ +  +    I SY N I T EGGTH  G
Sbjct: 238 YVDRHRQHLFDDVIYLKTEKQNIP---IEVAVMYNTDYTENIHSYVNNINTIEGGTHLQG 294

Query: 334 LRVALTRGIKKYAEL------TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
            R ALTR +K YA+          K  I I  +D       ++S+ + EP+F GQTKTKL
Sbjct: 295 FRAALTRTLKTYADNDPQISKQLEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKL 354

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRK 446
            + +    V+ A+ +    YL ++P EA  +   VI  +  R+  RK RE   RK  +  
Sbjct: 355 GNSEVSGAVQQAVGEALTDYLEEHPNEAKMICNKVILAATARVAARKARESVQRKNVMSG 414

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADCS       E+F+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV      +
Sbjct: 415 GGLPGKLADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQRHR 474

Query: 507 IRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           +   + +M+++Q++G R         +   + LRY+K+IIMTDADVDG+HI +L++T FY
Sbjct: 475 VFEAESVMNIIQSIGVRFGVEGEGDFEANTDKLRYDKIIIMTDADVDGSHIDTLIMTLFY 534

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF--KKHGKGKIEISRFK 618
           + M  +IEQ HL++ +PPL++ T    + Y + E+ +Q  ++++         I   R+K
Sbjct: 535 RYMPKVIEQGHLYIATPPLYKCTYKKVNEYCYTEQQRQAFIDKYANGAEDAKAIHTQRYK 594

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           GLGEM   QL ET MD   R L +V I     +  D  +  + LMG   + R +FI++ A
Sbjct: 595 GLGEMNPEQLWETTMDPKTRLLKQVTIE----NAADADEIFSMLMGDDVEPRREFIEKNA 650

Query: 679 SFIDDVGT 686
           ++  ++  
Sbjct: 651 TYA-NIDA 657


>gi|312888910|ref|ZP_07748472.1| DNA gyrase subunit B [Mucilaginibacter paludis DSM 18603]
 gi|311298651|gb|EFQ75758.1| DNA gyrase subunit B [Mucilaginibacter paludis DSM 18603]
          Length = 652

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 258/657 (39%), Positives = 375/657 (57%), Gaps = 20/657 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              +    NY A +I++LEGLE VR RP MYIG T  K LHHL  EV+DN++DE +AG+ 
Sbjct: 2   SEEKEDKSNYSADNIQVLEGLEAVRKRPSMYIGDTGVKGLHHLVYEVVDNSIDEALAGHC 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I+V +     +TV+DNGRGIP   + K   KS LEI++T LHAGGKFD  TY++SGGL
Sbjct: 62  DDIKVFIHKGNSITVIDNGRGIPTGINTK-EQKSALEIVMTVLHAGGKFDKDTYKVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+S VNALS  +   V R+  IF+Q++ +G P+  +++   V +  GT  TF+PDP+
Sbjct: 121 HGVGVSCVNALSTHMKTLVYREGKIFTQEYEKGKPIFEVKEIG-VSDHTGTTQTFQPDPE 179

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     +    L    +  A+L+  ++   + ++E+ E       +EFY  GGL+ +++
Sbjct: 180 IFTLTTEYKFETLASRLRELAFLNKGIRLSLTDEREVKEDG-TFVCDEFYSEGGLREFVK 238

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESG 333
                R  I  E       K G     VE A  + +   E   SY N I T EGGTH SG
Sbjct: 239 YLDGTRVSIIPEPIYLDGIKNGVP---VELAFQYNDTYSENVHSYVNNINTIEGGTHVSG 295

Query: 334 LRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R  LTR +K YA+     +   I I  DD       I+SV ++EP+F GQTK+KL + +
Sbjct: 296 FRRGLTRTLKAYADKEGLLKNNKIEITGDDFREGLTAIISVKVQEPQFEGQTKSKLGNNE 355

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRKLRLP 450
               V+ A+ +   ++L +NP EA  ++  V I        R+ +  V RK  +    LP
Sbjct: 356 VIGAVDQAVGEILGNFLEENPKEAKLIVGKVLIAAQARAAARKAREMVQRKNVMGGSGLP 415

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC+ +     EL++VEGDSAGG+AK  RNR  QA+LPLRGKILNV  A   KI  N
Sbjct: 416 GKLADCANSDPAVCELYLVEGDSAGGTAKMGRNRDYQAILPLRGKILNVEKAMEHKIYEN 475

Query: 511 QQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           ++I ++  ALG    +         + LRY K++IMTDADVDG+HI +L+LTFF++ M +
Sbjct: 476 EEIKNMFTALGVSIGTAEDNKALNLDKLRYHKIVIMTDADVDGSHITTLILTFFFRYMKE 535

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEML 624
           L+E  ++++ SPPL+ + +G +  Y   E+ ++  ++  K  GK   +   R+KGLGEM 
Sbjct: 536 LVEYGYVYIASPPLYLVKKGKEQEYCWTEDQREAAIQRLKGGGKEESVHTQRYKGLGEMN 595

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           A QL +T M+   RTL R  I+           + + LMG +   R +FI++ A + 
Sbjct: 596 AIQLWDTTMNPETRTLRRATIDNAAEC----DHTFSMLMGDEVAPRREFIEKNAKYA 648


>gi|298491608|ref|YP_003721785.1| DNA gyrase subunit B ['Nostoc azollae' 0708]
 gi|298233526|gb|ADI64662.1| DNA gyrase, B subunit ['Nostoc azollae' 0708]
          Length = 645

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 254/651 (39%), Positives = 362/651 (55%), Gaps = 14/651 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +Y A  I++LEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AG+   +EV 
Sbjct: 2   TSSYSADQIQVLEGLEAVRKRPGMYIGTTGPRGLHHLVYEVVDNSVDEALAGHCTHVEVD 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +G +TV D+GRGIPV+ HPK   KS LE +LT LHAGGKF    Y++SGGLHGVGIS
Sbjct: 62  INADGSVTVTDDGRGIPVDIHPK-TGKSALETVLTVLHAGGKFGGGGYKVSGGLHGVGIS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ + VTV R N    Q++ R  P++ L+ K     + GT ITF+PD +IF    
Sbjct: 121 VVNALSEFVEVTVWRDNKEHLQRYERSFPVTELQVKPYKEPRTGTSITFKPDTQIFTISI 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   L    +  AYL+  VK  ++  +    K   P  E + + GG+K Y+      +
Sbjct: 181 EFDYITLSGRLRELAYLNAGVKIIFTDHRLELLKSDTPRIEIYEYKGGIKEYVAYMNREK 240

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
             +  EI   + E+    +  V            +  + N I T +GGTH  GL+  LTR
Sbjct: 241 QPLHEEIIYVQGERNNV-QVEVSLQWCTDAYTDNVLGFANNIRTIDGGTHLEGLKAVLTR 299

Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +   A      +    ++  + +      ++SV + +PEF GQTKTKL + + +  V++
Sbjct: 300 TLNAIARKRNKIKENESNLSGEHVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDS 359

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            + +    YL  +P  A  +L+  I+  +     R  RE V RK+ +    LPGKLADCS
Sbjct: 360 FVGEVLTEYLEFHPSIADAILDKAIQAFKAAEAARHARELVRRKSVLESSPLPGKLADCS 419

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +E+FIVEGDSAGGSAKQ R+R  QA+LPLRGKILN+      KI  N ++  L+
Sbjct: 420 SRDPSESEIFIVEGDSAGGSAKQGRDRRTQAILPLRGKILNIEKTDDAKIYKNNEVQSLI 479

Query: 518 QALGCRTRSQYREE-DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
            ALG   + +  +   LRY +++IMTDADVDGAHI +LLLTFFY+    LIEQ  +++  
Sbjct: 480 TALGLGVKGEEFDSAQLRYHRIVIMTDADVDGAHIRTLLLTFFYRYKRALIEQGFIYIAC 539

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+++ +G    Y + E   Q+ +       K    I RFKGLGEM+  QL  T M+  
Sbjct: 540 PPLYKVERGKNHEYCYSERELQQHIATLPT--KANYNIQRFKGLGEMMPEQLWTTTMNPE 597

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS--FIDDVG 685
            R + +VEI        +       LMG +   R +FI+   S   + D+ 
Sbjct: 598 TRKMKQVEIED----AAEADRIFTILMGDRVAPRREFIETYGSKLNLTDLD 644


>gi|331004661|ref|ZP_08328123.1| DNA gyrase subunit B [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330409588|gb|EGG89028.1| DNA gyrase subunit B [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 637

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 253/650 (38%), Positives = 374/650 (57%), Gaps = 20/650 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S  YDAS I+ILEGLE VR+RPGMYIG    + LHHL  E++DN++DE +AG+   I+V 
Sbjct: 2   STEYDASQIQILEGLEAVRVRPGMYIGSISSRGLHHLVYEIVDNSVDEALAGFCTEIKVK 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TV DNGRGIPV+   K   K  LE++ T LHAGGKF    Y+ SGGLHGVG S
Sbjct: 62  INEDNSITVRDNGRGIPVDIQQKA-GKPALEVVFTILHAGGKFGGGGYKTSGGLHGVGAS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDK 219
           VVNALS  L V V +   I+  +F +G  +  ++   +    + GT ++F PD  IF + 
Sbjct: 121 VVNALSTWLDVKVYKDCKIYHMRFEKGKVVEDIKVIGECSPEESGTEVSFLPDAGIFEET 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             +D   L    +  A+L+  +K      +          +  F++ GG+K ++    ++
Sbjct: 181 V-YDFDILKVRLRETAFLTKALKITLIDKR------AEKREMSFHYEGGIKEFVTYLNKS 233

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +S I  ++   +  K+      VE A+   +     I ++ N I T EGGTH SG + AL
Sbjct: 234 KSPIYEDVIYCEGIKEKV---VVEVAMQHNDTYTESIYTFVNNINTPEGGTHLSGFKNAL 290

Query: 339 TRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           T+   +YA   +  +    ++  +D+    V I+SV I++P+F GQTK KL + +AQ  V
Sbjct: 291 TKTFNEYARNNKLLKENEENLSGEDIREGLVAIISVKIQDPQFEGQTKQKLGNSEAQTAV 350

Query: 397 ENALRDPFDHYLVQNPIEAT-KLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
              + +   ++L QNP  A     + +  +      R+ +    RK+A+  + LPGKLAD
Sbjct: 351 NAVVSEQLTYFLEQNPGVAKLISEKAITAQRARAAARKARDLTRRKSALDGMSLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS       E+FIVEGDSAGGSAK AR R  QA+LPLRGKILNV  A  +KI +N +I  
Sbjct: 411 CSSKNPEECEIFIVEGDSAGGSAKSARKRDTQAILPLRGKILNVEKARLDKIYSNAEIKA 470

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ A G   +  +    LRY K+IIMTDADVDGAHI +L+LTF Y+ M +LI++ H++L 
Sbjct: 471 MITAFGTGIQKDFDISKLRYNKIIIMTDADVDGAHIDTLMLTFIYRFMPELIKEGHVYLA 530

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+++ +  K  YA+ +E    IL+E  +    K  I R+KGLGEM A QL ET MD 
Sbjct: 531 QPPLYKLEKNKKVWYAYSDEELDNILKEVGRDQNNK--IQRYKGLGEMDAEQLWETTMDP 588

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +R L +V ++  +  L +T  + N LMG +   R +FI+  A ++ ++ 
Sbjct: 589 ERRVLKKVVLDDSM--LSETDITFNTLMGDQVAPRREFIEANAKYVSNLD 636


>gi|288800604|ref|ZP_06406062.1| DNA gyrase, B subunit [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332817|gb|EFC71297.1| DNA gyrase, B subunit [Prevotella sp. oral taxon 299 str. F0039]
          Length = 657

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 259/669 (38%), Positives = 388/669 (57%), Gaps = 30/669 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
             NQ+  +NY AS+I++LEGLE VR RP MYIG   EK LHHL +E +DN++DE +AGY 
Sbjct: 2   SENQNIENNYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLVNETVDNSIDEAMAGYC 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             IEV+++ +  +TV DNGRGIPV+ H K    S LE+++T LHAGGKFD  +Y++SGGL
Sbjct: 62  TDIEVTINEDNSITVQDNGRGIPVDMHEKLHK-SALEVVMTVLHAGGKFDKGSYKVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+S VNALS  +   V R   I+ Q++ +G PL  ++   +  N RGTR  F PDP 
Sbjct: 121 HGVGVSCVNALSTHMKSQVFRDGKIYQQEYEQGKPLYSVKVVGET-NLRGTRQQFWPDPS 179

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     +    + +  +  AYL+  V+   +  +   E      +EEFY   GLK + +
Sbjct: 180 IFTTTL-YKWDIISRRMRELAYLNAGVRITLTDLRLDEEGKI--RREEFYAQDGLKAFAR 236

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               +R+ +  ++   KTEK       +E A+ +  +    I SY N I T EGGTH +G
Sbjct: 237 YIDRHRTHLFDDVIYLKTEKNNVP---IEVAVMYNTDYSENIHSYVNNINTIEGGTHLTG 293

Query: 334 LRVALTRGIKKYAEL------TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
            R+ALTR +K YA+          K  I I  +D       ++S+ + EP+F GQTKTKL
Sbjct: 294 FRMALTRTLKAYADNDPVISKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKL 353

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRK 446
            + +    V+ A+ +    YL ++P EA  + + VI  +  R+  RK RE  ++   +  
Sbjct: 354 GNSEVSGAVQQAVGEALADYLEEHPKEAKLICDKVILAATARIAARKARESVQRKNPMTG 413

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADCS      +E+F+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV      K
Sbjct: 414 GGLPGKLADCSNKDPKTSEIFLVEGDSAGGSAKQGRDRYCQAILPLRGKILNVEKVMWHK 473

Query: 507 IRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           +  ++ +M+++Q++G R         +   + LRY+K+IIMTDADVDG+HI +L++T FY
Sbjct: 474 VFESESVMNIIQSIGVRFGVEGEDDKEANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFY 533

Query: 561 QEMYDLIEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEF--KKHGKGKIEISRF 617
           + M  +I++ HL++ +PPL+  + +  +  Y + E+ +Q  ++     K     I + R+
Sbjct: 534 RFMPKVIQEGHLYIATPPLYLCSYKNKEKEYCYTEQQRQAFIDRHTEGKDDSKSIHVQRY 593

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           KGLGEM   QL ET M+   R L +V I     +  +  +  + LMG   + R +FI++ 
Sbjct: 594 KGLGEMNPEQLWETTMNPQTRLLKQVTIE----NAAEADEIFSMLMGDDVEPRREFIEQN 649

Query: 678 ASFIDDVGT 686
           A++  ++  
Sbjct: 650 ATYA-NIDA 657


>gi|283469234|emb|CAQ48445.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus ST398]
          Length = 644

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 250/657 (38%), Positives = 378/657 (57%), Gaps = 20/657 (3%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
            A ++ + +DNY A  I++LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AG
Sbjct: 3   TALSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 62

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           YAN IEV ++ + ++ V DNGRGIPV+   K   +  +E+ILT LHAGGKF    Y++SG
Sbjct: 63  YANQIEVVIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 121

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG SVVNALS +L V V R  TI+ Q + +G+P   L++     +K GT I F+ D
Sbjct: 122 GLHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKAD 180

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
             IF +   ++   L +  +  A+L+  ++     +++         ++ +++ GG+K+Y
Sbjct: 181 GDIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEE----NVREDSYHYEGGIKSY 236

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++   EN+  I  E       K       VE AI +       + +Y N I T EGGTHE
Sbjct: 237 VELLNENKEPIHDEPIYIHQSKDDI---EVEIAIQYNSGYATNLLTYANNIHTYEGGTHE 293

Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G + ALTR +  Y   ++  +        +D       I+S+   +P+F GQTKTKL +
Sbjct: 294 DGFKRALTRVLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGN 353

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLR 448
            + ++ V+    + F+ +L +NP  A  ++E  ++        ++ +    RK+A+    
Sbjct: 354 SEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVAS 413

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS       E+F+VEGDSAGGS K  R+   QA+LPLRGKILNV  A  ++I 
Sbjct: 414 LPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRIL 473

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           NN +I  ++ A G      +     RY K++IMTDADVDGAHI +LLLTFFY+ M  LIE
Sbjct: 474 NNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 533

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             ++++  PPL+++TQG +  Y +++    K+  E   +   K  I+R+KGLGEM A QL
Sbjct: 534 AGYVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSEL--NPTPKWSIARYKGLGEMNADQL 591

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            ET M+   R LL+V++   +    +   +   LMG   + R +FI++ A +  ++ 
Sbjct: 592 WETTMNPEHRALLQVKLEDAI----EADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 643


>gi|78185902|ref|YP_373945.1| DNA gyrase, B subunit [Chlorobium luteolum DSM 273]
 gi|78165804|gb|ABB22902.1| DNA gyrase subunit B [Chlorobium luteolum DSM 273]
          Length = 644

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 264/655 (40%), Positives = 377/655 (57%), Gaps = 25/655 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           Q+   NY A++I++L+G+  VRMRP MYIG    + LHHL  E++DN++DE + GY + I
Sbjct: 7   QTPQSNYGATNIQVLDGIAHVRMRPAMYIGDIHSRGLHHLIYEIVDNSIDETLGGYNDYI 66

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            VSL+ +G +TV+D+GRGIPV+ HP    KS LE+++T + AGGKFD   Y++SGGLHGV
Sbjct: 67  FVSLNPDGSVTVIDHGRGIPVDIHP-DKKKSALELVMTLIGAGGKFDKGAYKVSGGLHGV 125

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS+   V V R    + Q++ RG+P + +++      +  T+ TF PD +IF 
Sbjct: 126 GASVVNALSEWCEVEVYRDGKAWFQRYHRGVPEADVKEIGTTTERG-TKTTFMPDSEIFK 184

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F    ++   +  A+L+  +K                E+E F+F GGLK ++    
Sbjct: 185 V-TEFRKDIIIDRMRELAFLNSNLKIVVQD--------IEGEQETFHFEGGLKEFVLFTD 235

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           ENR  +  E      EK GT    VE A+ + +     + SY N I T EGGTH +G R 
Sbjct: 236 ENRLNLIKEPIYIYGEKDGTI---VEIALEYNDSYQENVFSYVNNINTHEGGTHVTGFRK 292

Query: 337 ALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  YA+     + +   +  DD       ++SV + EP+F GQTKTKL + + Q 
Sbjct: 293 ALTRTLNAYAQKNDLLKNLKLALTGDDFKEGLTAVISVKVAEPQFEGQTKTKLGNSETQS 352

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            VE+ L +    +   NP     ++E V   +  R   RK +E   RK+ +    LPGKL
Sbjct: 353 IVESVLNEQLAEFAESNPNVIKMIIEKVKGAAMSREAARKAKELTRRKSVLESSGLPGKL 412

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS N     EL+IVEGDSAGGSAKQ R+RS QA+LPL+GKILNV  A   K+  N++I
Sbjct: 413 ADCSINDPEHCELYIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKARLHKMLENEEI 472

Query: 514 MDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             ++ ALG     +    E LRY K+IIMTDADVDGAHI +LLLTFF++ M  LIE   +
Sbjct: 473 KTIILALGTNFGEEEFSAEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRHMRSLIEAGKV 532

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKK--HGKGKIEISRFKGLGEMLASQLKE 630
           ++  PPL+ +  G +  YA D++ +  I +  KK   GK  + I R+KGLGEM   QL  
Sbjct: 533 YIAQPPLYLVKSGKEQQYAWDDDERNSISDSMKKMQKGKANVHIQRYKGLGEMNPEQLWG 592

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T MD   R+LL+V +   +    +     + LMG K + R +FI++ A ++  + 
Sbjct: 593 TTMDPEHRSLLQVSVENAM----EADKVFSTLMGDKVEPRREFIEKNARYVRRLD 643


>gi|82749782|ref|YP_415523.1| DNA gyrase subunit B [Staphylococcus aureus RF122]
 gi|82655313|emb|CAI79693.1| DNA gyrase subunit B [Staphylococcus aureus RF122]
          Length = 644

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 249/657 (37%), Positives = 379/657 (57%), Gaps = 20/657 (3%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
            A ++ + +DNY A  I++LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AG
Sbjct: 3   TALSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 62

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           YAN IEV ++ + ++ V DNGRGIPV+   K   +  +E+ILT LHAGGKF    Y++SG
Sbjct: 63  YANQIEVVIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 121

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG SVVNALS +L V V R  TI+ Q + +G+P   L++     +K GT I F+ D
Sbjct: 122 GLHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKAD 180

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            +IF +   ++   L +  +  A+L+  ++     +++         ++ +++ GG+K+Y
Sbjct: 181 GEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEE----NVREDSYHYEGGIKSY 236

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++   EN+  I  E       K       VE AI +       + +Y N I T EGGTHE
Sbjct: 237 VELLNENKEPIHDEPIYIHQSKDDI---EVEIAIQYNSGYATNLLTYANNIHTYEGGTHE 293

Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G + ALTR +  Y   ++  +        +D       I+S+   +P+F GQTKTKL +
Sbjct: 294 DGFKRALTRVLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGN 353

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLR 448
            + ++ V+    + F+ +L +NP  A  ++E  ++        ++ +    RK+A+    
Sbjct: 354 SEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVAS 413

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS       E+F+VEGDSAGGS K  R+   QA+LPLRGKILNV  A  ++I 
Sbjct: 414 LPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRIL 473

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           NN +I  ++ A G      +     RY K++IMTDADVDGAHI +LLLTFFY+ M  LIE
Sbjct: 474 NNNEIRQMITAFGTGIGDDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 533

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             ++++  PPL+++TQG +  Y +++    K+  +   +   K  I+R+KGLGEM A QL
Sbjct: 534 AGYVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSKL--NPTPKWSIARYKGLGEMNADQL 591

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            ET M+   R LL+V++   +    +   +   LMG   + R +FI++ A +  ++ 
Sbjct: 592 WETTMNPEHRALLQVKLEDAI----EADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 643


>gi|16126217|ref|NP_420781.1| DNA topoisomerase IV subunit B [Caulobacter crescentus CB15]
 gi|221234989|ref|YP_002517425.1| DNA topoisomerase IV subunit B [Caulobacter crescentus NA1000]
 gi|13638361|sp|O54479|PARE_CAUCR RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|13423439|gb|AAK23949.1| topoisomerase IV, subunit B [Caulobacter crescentus CB15]
 gi|220964161|gb|ACL95517.1| topoisomerase IV subunit B [Caulobacter crescentus NA1000]
          Length = 695

 Score =  614 bits (1583), Expect = e-173,   Method: Composition-based stats.
 Identities = 374/690 (54%), Positives = 471/690 (68%), Gaps = 17/690 (2%)

Query: 5   SIDLFSTLPPQSQGSSEKLK---KSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMR 61
             D  + +P     +S + +       IP  P     SA   Y A+ I +LEGLEPVR R
Sbjct: 13  DDDALAPVPAAPFKASVEPRVEPTPRPIPPPPPSKTASAPGEYSAADIEVLEGLEPVRKR 72

Query: 62  PGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENH 121
           PGMYIGGTDE+ALHHLF+EV+DN+MDE +AG+A  IEV LD +GFL+V D+GRG+PV+ H
Sbjct: 73  PGMYIGGTDERALHHLFAEVLDNSMDEAVAGFAKTIEVKLDADGFLSVKDDGRGMPVDPH 132

Query: 122 PKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFS 181
           PK+P KS LE+I+T LHAGGKF    YE SGGLHGVG SVVNALS+ + VTV R      
Sbjct: 133 PKYPGKSALEVIMTVLHAGGKFTGKAYETSGGLHGVGASVVNALSERVEVTVWRDGFEHL 192

Query: 182 QKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241
           Q FSRG PL P+++    +  +GT + F+PD +IFG+   F  ARL +M +SKAYL   V
Sbjct: 193 QVFSRGKPLGPIQQVAPSKK-KGTMVRFKPDDEIFGEGTNFKPARLYRMARSKAYLFRGV 251

Query: 242 KTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
           +  WSCD         PE   F+FP GL  +L  + +  + I+ E F G+ E++G   G 
Sbjct: 252 QIKWSCDPSRIHDQTPPEA-TFHFPNGLADFLAERTKGLTTITPESFAGRIERQGEA-GA 309

Query: 302 VEWAIAWC-----EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
           VEWA+ W      E +  + SYCNT+ T EGGTHESG R ALTRG+K YAEL   KR   
Sbjct: 310 VEWAVTWTPQGFGEHDGFMQSYCNTVPTPEGGTHESGFRAALTRGLKAYAELKGEKRGTI 369

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           I +DD++  A  ++SVFI+ PEF GQTK KL + +AQR VE +LRDPFD +L  +P  A 
Sbjct: 370 ITADDVVAQAGALISVFIKNPEFQGQTKEKLSTSEAQRFVEASLRDPFDLWLSSSPKNAQ 429

Query: 417 KLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
            LLE+VIER+EERL+RRK +EV+R +A RKLRLPGKLADC+ +   G ELFIVEGDSAGG
Sbjct: 430 ALLEFVIERAEERLKRRKDKEVSRASATRKLRLPGKLADCAGSAVDGAELFIVEGDSAGG 489

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAKQAR+R  QA+LPLRGKILNVASA  EK   N+++ DL+ ALG +  ++YREEDLRYE
Sbjct: 490 SAKQARDRKYQAILPLRGKILNVASASGEKFTANKELSDLMLALGAQAGAKYREEDLRYE 549

Query: 537 KVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEH 596
           ++IIMTDADVDGAHIASLL+TFFY+ M +LI   HLFL  PPL+R+  G KS YA D+ H
Sbjct: 550 RIIIMTDADVDGAHIASLLITFFYRTMPELIRGGHLFLALPPLYRLAHGGKSEYARDDAH 609

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
           K+++L    K    K EI RFKGLGEM+ASQLKET MD  KRTL RV + +   S++D  
Sbjct: 610 KEELLATVFK--GKKPEIGRFKGLGEMMASQLKETTMDPKKRTLARVTLPRHEESVED-- 665

Query: 657 DSINKLMGTKADERFKFIQERASFID-DVG 685
             +  LMG K + RF+FIQE A F   D+ 
Sbjct: 666 -LVETLMGRKPELRFRFIQENAEFASADLD 694


>gi|302331777|gb|ADL21970.1| DNA topoisomerase (ATP-hydrolyzing) subunit B, GyrB [Staphylococcus
           aureus subsp. aureus JKD6159]
          Length = 644

 Score =  614 bits (1583), Expect = e-173,   Method: Composition-based stats.
 Identities = 249/657 (37%), Positives = 378/657 (57%), Gaps = 20/657 (3%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
            A ++ + +DNY A  I++LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AG
Sbjct: 3   TALSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 62

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           YAN IEV ++ + ++ V DNGRGIPV+   K   +  +E+ILT LHAGGKF    Y++SG
Sbjct: 63  YANQIEVVIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 121

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG SVVNALS +L V V R  TI+ Q + +G+P   L++     +K GT I F+ D
Sbjct: 122 GLHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKAD 180

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            +IF +   ++   L +  +  A+L+  ++     +++         ++ +++ GG+K+Y
Sbjct: 181 GEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEE----NVREDSYHYEGGIKSY 236

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++   E +  I  E       K       VE AI +       + +Y N I T EGGTHE
Sbjct: 237 VELLNEKKEPIHDEPIYIHQSKDDI---EVEIAIQYNSGYATNLLTYANNIHTYEGGTHE 293

Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G + ALTR +  Y   ++  +        +D       I+S+   +P+F GQTKTKL +
Sbjct: 294 DGFKRALTRVLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGN 353

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLR 448
            + ++ V+    + F+ +L +NP  A  ++E  ++        ++ +    RK+A+    
Sbjct: 354 SEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVAS 413

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS       E+F+VEGDSAGGS K  R+   QA+LPLRGKILNV  A  ++I 
Sbjct: 414 LPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRIL 473

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           NN +I  ++ A G      +     RY K++IMTDADVDGAHI +LLLTFFY+ M  LIE
Sbjct: 474 NNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 533

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             ++++  PPL+++TQG +  Y +++    K+  E   +   K  I+R+KGLGEM A QL
Sbjct: 534 AGYVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSEL--NPTPKWSIARYKGLGEMNADQL 591

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            ET M+   R LL+V++   +    +   +   LMG   + R +FI++ A +  ++ 
Sbjct: 592 WETTMNPEHRALLQVKLEDAI----EADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 643


>gi|148266452|ref|YP_001245395.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus JH9]
 gi|150392485|ref|YP_001315160.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus JH1]
 gi|147739521|gb|ABQ47819.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus JH9]
 gi|149944937|gb|ABR50873.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus JH1]
          Length = 640

 Score =  614 bits (1583), Expect = e-173,   Method: Composition-based stats.
 Identities = 249/655 (38%), Positives = 378/655 (57%), Gaps = 20/655 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            ++ + +DNY A  I++LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AGYA
Sbjct: 1   MSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYA 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           N IEV ++ + ++ V DNGRGIPV+   K   +  +E+ILT LHAGGKF    Y++SGGL
Sbjct: 61  NKIEVVIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS +L V V R  TI+ Q + +G+P   L++     +K GT I F+ D +
Sbjct: 120 HGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKADGE 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   ++   L +  +  A+L+  ++     +++         ++ +++ GG+K+Y++
Sbjct: 179 IFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEE----NVREDSYHYEGGIKSYVE 234

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              EN+  I  E       K       VE AI +       + +Y N I T EGGTHE G
Sbjct: 235 LLNENKEPIHDEPIYIHQSKDDI---EVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDG 291

Query: 334 LRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            + ALTR +  Y   ++  +        +D       I+S+   +P+F GQTKTKL + +
Sbjct: 292 FKRALTRVLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSE 351

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLP 450
            ++ V+    + F+ +L +NP  A  ++E  ++        ++ +    RK+A+    LP
Sbjct: 352 VRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLP 411

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS       E+F+VEGDSAGGS K  R+   QA+LPLRGKILNV  A  ++I NN
Sbjct: 412 GKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNN 471

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
            +I  ++ A G      +     RY K++IMTDADVDGAHI +LLLTFFY+ M  LIE  
Sbjct: 472 NEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAG 531

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPL+++TQG +  Y +++    K+  E   +   K  I+R+KGLGEM A QL E
Sbjct: 532 YVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSEL--NPTPKWSIARYKGLGEMNADQLWE 589

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T M+   R LL+V++   +    +   +   LMG   + R +FI++ A +  ++ 
Sbjct: 590 TTMNPEHRALLQVKLEDAI----EADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 639


>gi|300726297|ref|ZP_07059750.1| DNA gyrase, B subunit [Prevotella bryantii B14]
 gi|299776494|gb|EFI73051.1| DNA gyrase, B subunit [Prevotella bryantii B14]
          Length = 658

 Score =  614 bits (1583), Expect = e-173,   Method: Composition-based stats.
 Identities = 261/669 (39%), Positives = 390/669 (58%), Gaps = 29/669 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
             NQ+   NY AS+I++LEGLE VR RP MYIG   EK LHHL +E +DN++DE +AGY 
Sbjct: 2   AENQNNEANYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLINETVDNSIDEAMAGYC 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             ++V+++ +G +TV DNGRGIPV+ H K    S LE+++T LHAGGKFD  +Y++SGGL
Sbjct: 62  TDVQVTVNEDGSITVEDNGRGIPVDEHKKLHK-SALEVVMTVLHAGGKFDKGSYKVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+S VNALS  +   V R   I+ Q++ +G PL P++   +  +KRGT   F PDP 
Sbjct: 121 HGVGVSCVNALSTHMKSQVFRDGKIYQQEYEKGKPLYPVKIVGET-DKRGTCQQFWPDPT 179

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     F    + +  +  AYL+  ++   +  +  AE      +E F+   GLK +++
Sbjct: 180 IFTT-TTFQWDIIARRMRELAYLNAGIRITLTDLRPNAETGKT-RQEVFHAVEGLKEFVR 237

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               +R+ +  ++   KTEK+G     +E A+ +  +    I SY N I T EGGTH +G
Sbjct: 238 YVDRHRTHLFDDVIYLKTEKQGVP---IEVAVMYNTDYSENIHSYVNNINTIEGGTHLTG 294

Query: 334 LRVALTRGIKKYAEL------TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
            R ALTR +K YA+          K  I I  +D       ++S+ + EP+F GQTKTKL
Sbjct: 295 FRTALTRTLKAYADNDSAISKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKL 354

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRK 446
            + +    V+ A+ +    YL ++P EA  + E VI  +  R+  RK RE   RK  +  
Sbjct: 355 GNSEVAGAVQQAVGEALSDYLEEHPSEAKAICEKVILAATARIAARKARESVQRKNVMTG 414

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADCS       E+F+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV      +
Sbjct: 415 GGLPGKLADCSNKDPKQCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVPWHR 474

Query: 507 IRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           +   + +M+++Q++G R         +   + LRY+K+IIMTDADVDG+HI +L++T F+
Sbjct: 475 VFEAESVMNIIQSIGVRFGVEGEADREANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFF 534

Query: 561 QEMYDLIEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKK--HGKGKIEISRF 617
           + M  +IE+ HL++ +PPL++ T +   S Y + ++ +Q  ++++         I   R+
Sbjct: 535 RFMPKVIEEGHLYIATPPLYKCTFKNKVSEYCYTDQQRQAFIDKYGNGIDDGKSIHTQRY 594

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           KGLGEM   QL ET MD   R L +V I        +  ++ + LMG   + R +FI++ 
Sbjct: 595 KGLGEMNPEQLWETTMDPTSRLLKQVTIED----AAEADETFSMLMGDDVEPRREFIEQN 650

Query: 678 ASFIDDVGT 686
           A++  ++  
Sbjct: 651 ATYA-NIDA 658


>gi|257876709|ref|ZP_05656362.1| topoisomerase IV B subunit [Enterococcus casseliflavus EC20]
 gi|257810875|gb|EEV39695.1| topoisomerase IV B subunit [Enterococcus casseliflavus EC20]
          Length = 677

 Score =  614 bits (1583), Expect = e-173,   Method: Composition-based stats.
 Identities = 245/655 (37%), Positives = 355/655 (54%), Gaps = 33/655 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
             +  Y+ +SI++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DE ++GY N I+
Sbjct: 5   KKTTEYNDASIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGNEID 64

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +  ++V DNGRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHGVG
Sbjct: 65  VTIHKDNSISVRDNGRGMPVGTH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 122

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
            SVVNALS  L V + R    + Q F   G P   L+K  K R   GT +TF+PD  IF 
Sbjct: 123 ASVVNALSSWLEVVIVRDGIEYKQSFKDGGKPAGTLKKIGKTRKPTGTTVTFKPDDTIFS 182

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F    L +  +  A+L   VK   + ++        P  E F +  G+K ++    
Sbjct: 183 A-TRFSYEILAERLRESAFLLKGVKISLTDER-----GEEPIHEVFLYEEGIKEFVDYLN 236

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRV 336
           E +  + +++      K+      VE A  + +   E   S+ N + T +GGTHE G++ 
Sbjct: 237 EEKDTL-TQVVYFSGTKEAI---EVELAFQYNDGYSENVLSFVNNVRTKDGGTHEVGMKT 292

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392
           ++T+   +YA       ++  ++   D       +LS+ + E   +F GQTK KL +  A
Sbjct: 293 SMTKAFNEYARKVNLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLA 352

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRL 449
           +  V+N + +   +YL +N   +  L+   I+  E R   RK RE +R    RK     L
Sbjct: 353 RNAVDNVIGEQLGYYLQENSEMSQMLVRKAIKAREAREAARKAREESRTGKKRKKGESLL 412

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
            GKL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I  
Sbjct: 413 SGKLTPAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILK 472

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N++I  ++  +G     ++  ED  Y+KVIIMTDAD DGAHI  LLLTFFY+ M  LIE 
Sbjct: 473 NEEINTMIYTIGAGVGPEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEA 532

Query: 570 KHLFLISPPLFRITQ--GTK--SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
             +++  PPL+++++  G K    YA  ++   K+ ++  K       + R+KGLGEM A
Sbjct: 533 GKVYIALPPLYKVSKGLGKKAVVEYAWTDDELNKLTQKIGK----GYLLQRYKGLGEMNA 588

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            QL ET MD   RTL+RV I+         +  +  LMG K + R K+I+    F
Sbjct: 589 DQLWETTMDPETRTLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIESHVQF 639


>gi|190710555|gb|ACE95108.1| gyrase subunit B [Bacillus thuringiensis serovar monterrey]
          Length = 627

 Score =  614 bits (1583), Expect = e-173,   Method: Composition-based stats.
 Identities = 262/644 (40%), Positives = 379/644 (58%), Gaps = 21/644 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            ++YD S I++LEGLE VR RPGMYI  T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENSYDESQIQVLEGLEAVRKRPGMYIASTSGKGLHHLVWEIVDNSIDEALAGYCDQINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++    + V DNGRGIPV    K   +  +++I+T LHAGGKF    Y++SGGLHGVG S
Sbjct: 61  IEEYNSIRVTDNGRGIPVGIQEKM-GRPAVKVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R+  I  QK+ RGIP++ L+      ++ GT   F+PDP+IF +  
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E    +  K G     VE ++ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K++E   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF++ QG K  YA++E+  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            R+LL+V +   +    +  ++   LMG K + R  FIQE A +
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKY 627


>gi|73661314|ref|YP_300095.1| DNA gyrase subunit B [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72493829|dbj|BAE17150.1| DNA gyrase subunit B [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 641

 Score =  614 bits (1583), Expect = e-173,   Method: Composition-based stats.
 Identities = 248/656 (37%), Positives = 378/656 (57%), Gaps = 21/656 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            ++ + +++Y A  I++LEGLE VR RPGMYIG T EK LHHL  E++DN++DE +AGYA
Sbjct: 1   MSDVNNTEDYGAGQIQVLEGLEAVRKRPGMYIGSTSEKGLHHLVWEIVDNSIDEALAGYA 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + IEV ++ + ++ V DNGRGIPV    K   +  +E+ILT LHAGGKF    Y++SGGL
Sbjct: 61  DTIEVVIEKDNWIKVTDNGRGIPVGIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDP 213
           HGVG SVVNALS++L V V +   ++ Q + +G+P   L+  E+  +   GT I F+ D 
Sbjct: 120 HGVGSSVVNALSEDLEVYVYKDRKVYHQGYKKGVPQFDLKVIEETDDDNTGTVIRFKADS 179

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IF +   +    L + T+  A+L+  +      ++          ++ +++ GG+K+Y+
Sbjct: 180 EIFTETTTYHYETLQQRTRELAFLNKGISITLRDER-----GEEVREDTYHYEGGIKSYV 234

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   EN+  +  E       K       VE A+ + +     + +Y N I T EGGTHE 
Sbjct: 235 EMLNENKQPLHEEPIYVHQTKDDI---EVEIALQYNKGFATNLLTYANNIHTYEGGTHEE 291

Query: 333 GLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G + AL+R +  Y   ++  +        +D       I+S+   +P+F GQTKTKL + 
Sbjct: 292 GFKRALSRVLNSYGLNSKIIKEDKERLSGEDTREGLTAIVSIKHGDPQFEGQTKTKLGNS 351

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           + ++ V+    + F+ +L ++P     ++E  I  S  RL  +K RE   RK+A+    L
Sbjct: 352 EVRQIVDKLFSELFERFLYEHPQVGRIVVEKGIMASHARLAAKKAREVTRRKSALEISSL 411

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADCS      +E+FIVEGDSAGGS K  R+   QA+LPLRGKILNV  A  ++I N
Sbjct: 412 PGKLADCSSKDPSRSEIFIVEGDSAGGSTKSGRDSETQAILPLRGKILNVEKARLDRILN 471

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N +I  ++ A G     ++     RY K+++MTDADVDGAHI +LLLTFFY+ M  L+E 
Sbjct: 472 NNEIRSMITAFGTGIGGEFDLSKARYHKIVLMTDADVDGAHIRTLLLTFFYRFMRPLLEA 531

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
            ++++  PPLF++TQG +  Y  +E   +K+  E       K  ISR+KGLGEM A QL 
Sbjct: 532 GYVYIAQPPLFKLTQGKQKYYVFNERELEKLKAEL--EPTPKWSISRYKGLGEMNADQLW 589

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           ET M+   R +L+V ++  +    +       LMG   + R +FI++ A +  ++ 
Sbjct: 590 ETTMNPENRAMLQVSLDDAI----EADQVFEMLMGDVVENRRQFIEDNAVYA-NLD 640


>gi|33862394|ref|NP_893954.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9313]
 gi|33640507|emb|CAE20296.1| DNA gyrase, subunit B [Prochlorococcus marinus str. MIT 9313]
          Length = 655

 Score =  614 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 255/656 (38%), Positives = 371/656 (56%), Gaps = 16/656 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
             +      Y A  I++LEGLEPVR RPGMYIG T  + LHHL  EV+DN++DE +AG+ 
Sbjct: 2   SEDSKVQAAYGAEQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVFEVVDNSVDEALAGHC 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I V L  +G  ++ DNGRGIP + H +   KS LE +LT LHAGGKF +  Y++SGGL
Sbjct: 62  DEILVVLGPDGSASISDNGRGIPTDVHSR-TGKSALETVLTVLHAGGKFGSGGYKVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS---PLEKKEKVRNKRGTRITFRP 211
           HGVG+SVVNALS+ + VTV RQ  +  Q+F RG  +       +    + + GT + F+P
Sbjct: 121 HGVGVSVVNALSEWVEVTVRRQGQVHRQRFERGTAIGSLRSEAQPASEKGRTGTSVCFKP 180

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA-EKYGIPEKEEFYFPGGLK 270
           D +IF     FD A L    +  AYL+G V+  +  +++   +  G P +E +++ GG+K
Sbjct: 181 DEEIFTVGIVFDYATLSTRLRELAYLNGGVRIVFRDERQPVLDAEGAPHEEVYFYEGGIK 240

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330
            Y+      +  +  EI    +EK    +            +  I  + N I T +GGTH
Sbjct: 241 EYVTYMNAEKDALHPEIIYVNSEKDNV-QVEAALQWCVDAYSDSILGFANNIRTVDGGTH 299

Query: 331 ESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             GL+  LTR +  +A     ++    ++  +++      +LSV + +PEF GQTKTKL 
Sbjct: 300 IEGLKTVLTRTLNTFARKRGKRKEADSNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLG 359

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447
           + + +  V++ + +    YL  NP     +LE  I+        R+ RE V RK+ +   
Sbjct: 360 NTEVRGIVDSLVGEALSQYLEFNPAVIDLILEKAIQAFNAAEAARRARELVRRKSVLESS 419

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILN+      KI
Sbjct: 420 TLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKI 479

Query: 508 RNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
             N +I  L+ ALG   + +  +   LRY +V+IMTDADVDGAHI +L+LTFFY+   +L
Sbjct: 480 YKNTEIQALITALGLGIKGEEFDSKNLRYHRVVIMTDADVDGAHIRTLILTFFYRYQKEL 539

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           +E  ++++  PPL+++ +G    Y ++E   Q  L  F +  K    I RFKGLGEM+  
Sbjct: 540 VEGGYIYIACPPLYKVERGKNHTYCYNEVDLQTTLSGFPE--KANYTIQRFKGLGEMMPK 597

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           QL ET MD + R + RVE+   L    +       LMG K   R +FI+  ++ +D
Sbjct: 598 QLWETTMDPSARMMKRVEVQDAL----EADRIFTILMGDKVAPRREFIETHSAELD 649


>gi|119512311|ref|ZP_01631397.1| DNA topoisomerase IV subunit B [Nodularia spumigena CCY9414]
 gi|119463024|gb|EAW43975.1| DNA topoisomerase IV subunit B [Nodularia spumigena CCY9414]
          Length = 645

 Score =  614 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 254/651 (39%), Positives = 363/651 (55%), Gaps = 14/651 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +Y A  I++LEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AG+   IEV 
Sbjct: 2   TSSYSADQIQVLEGLEAVRKRPGMYIGTTGPRGLHHLVYEVVDNSIDEALAGHCTHIEVD 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +G +TV D+GRGIP + H +   KS LE +LT LHAGGKF    Y++SGGLHGVG+S
Sbjct: 62  INADGSVTVTDDGRGIPTDTHSR-TGKSALETVLTVLHAGGKFGGGGYKVSGGLHGVGLS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALSD L VTV R N +  Q++ RG+P++ L+ K     K GT I F+PD +IF +  
Sbjct: 121 VVNALSDVLEVTVWRDNKVHVQRYERGVPVTELQAKPDKEGKTGTSINFKPDSQIFINSV 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   +    +  AYL+  VK  +   +    K   P  E + + GG+K Y+     ++
Sbjct: 181 EFDYITIAGRLRELAYLNAGVKIIFGDHRLELLKSDTPRIETYEYKGGIKEYIAYMNRDK 240

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
             +  EI     E+    +  V            +  + N I T +GGTH  GL+  LTR
Sbjct: 241 QPLHEEIIYVHGERNNV-QVEVSLQWCTDAYTDNVLGFANNIRTIDGGTHLEGLKAVLTR 299

Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +   A      +    ++  + +      ++SV + +PEF GQTKTKL + + +  V++
Sbjct: 300 TLNAIARKRNKIKENESNLSGEHVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDS 359

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            + +    YL  +P  A  +L+  I+  +     R  RE V RK+ +    LPGKLADCS
Sbjct: 360 LVGEVLSEYLEFHPGIADSILDKAIQAFKAAEAARHARELVRRKSVLESSPLPGKLADCS 419

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +E+FIVEGDSAGGSAKQ R+R  QA+LPLRGKILN+      KI  N ++  L+
Sbjct: 420 SRDPSESEIFIVEGDSAGGSAKQGRDRRTQAILPLRGKILNIEKTDDAKIYKNNEVQSLI 479

Query: 518 QALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
            ALG   +    +   LRY +++IMTDADVDGAHI +LLLTFFY+    LIEQ  +++  
Sbjct: 480 TALGLGVKGDEFDSTQLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQRALIEQGFIYIAC 539

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF++ +G    Y + E   Q+ L     +      I RFKGLGEM+  QL +T M+  
Sbjct: 540 PPLFKVERGKNHEYCYSERELQQYLGTLPSNAN--YNIQRFKGLGEMMPQQLWDTTMNPE 597

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685
            R + +VEI        +       LMG +   R +FI+   S ++  D+ 
Sbjct: 598 SRKMKQVEIED----AAEADRIFTILMGDRVAPRREFIETYGSKLNFTDLD 644


>gi|126725667|ref|ZP_01741509.1| DNA topoisomerase IV subunit B [Rhodobacterales bacterium HTCC2150]
 gi|126704871|gb|EBA03962.1| DNA topoisomerase IV subunit B [Rhodobacterales bacterium HTCC2150]
          Length = 653

 Score =  614 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 347/658 (52%), Positives = 446/658 (67%), Gaps = 10/658 (1%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
            +           YDASSI +LEGLEPVR+RPGMYIGGTDE+ALHHL +EV+DN+MDE +
Sbjct: 2   ANDLLTTPKDDPTYDASSIEVLEGLEPVRLRPGMYIGGTDERALHHLVAEVLDNSMDEAV 61

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AG+AN IEV L  +  +T+ DNGRGIP++ HPKFP+KS LE+IL TLHAGGKF    Y+ 
Sbjct: 62  AGHANRIEVELHADYAVTIRDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQT 121

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG SVVNALSD + V VAR   ++ Q+FSRGIP  P+EK     N+RGT +TF 
Sbjct: 122 SGGLHGVGASVVNALSDSMVVQVARNKELYEQRFSRGIPQGPVEKVGAAPNRRGTSVTFH 181

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
            D +IF     F  ARL K  +SKAYL   V+  W   K   +    P +  F+FPGGL 
Sbjct: 182 ADEQIF-GHHRFKPARLFKSIRSKAYLFSGVEIRW---KSEIDDGTTPTEATFHFPGGLS 237

Query: 271 TYLQTKLENRSLISSEIFTG--KTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEG 327
            YL   L   +  + + F G    ++K    G VEWAI W    +  I SYCNT+ T EG
Sbjct: 238 DYLNETLGTATTYAEKPFAGTVDFQEKFGVPGKVEWAINWTPSRDGFIQSYCNTVPTPEG 297

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           GTHESG   A+ +GIK Y EL  NK+A  I  +DL      ++S FI EPEF GQTK +L
Sbjct: 298 GTHESGFWAAVLKGIKAYGELINNKKATQITREDLTTGGSALVSCFISEPEFVGQTKDRL 357

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL 447
            +++AQR VEN++RD FD++L  +   A  +L++++ RSEERLRR+ ++E  RK+A +KL
Sbjct: 358 ATVEAQRLVENSVRDHFDNWLAADTKSAGAILDFLVLRSEERLRRKMEKETARKSATKKL 417

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
           RLPGKL DCS +   GTELFIVEGDSAGGSAK AR+R  QA+LPLRGKILNV  A S K+
Sbjct: 418 RLPGKLTDCSNSNREGTELFIVEGDSAGGSAKMARDRKTQALLPLRGKILNVLGAASSKM 477

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N +I DL QALG    +++  +DLRY+K+IIMTDADVDGAHIA+LL+TFFY +M  +I
Sbjct: 478 GQNAEINDLCQALGVGLGTKFNVDDLRYDKIIIMTDADVDGAHIAALLMTFFYTQMRPMI 537

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +  HL+L  PPLFR+TQG K VY  DE  K    E+    GKGKI++SRFKGLGEM A  
Sbjct: 538 DNGHLYLACPPLFRLTQGAKRVYCLDEIEKNNHFEK-GLGGKGKIDVSRFKGLGEMDAKD 596

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           LK+T M+   R L+RV I++D     +T D + +LMG K ++RF++IQE A F++++ 
Sbjct: 597 LKDTTMNPLTRKLIRVTIDEDE--PGETGDLVERLMGKKPEKRFEYIQENAKFVEELD 652


>gi|254469391|ref|ZP_05082796.1| DNA topoisomerase IV, B subunit [Pseudovibrio sp. JE062]
 gi|211961226|gb|EEA96421.1| DNA topoisomerase IV, B subunit [Pseudovibrio sp. JE062]
          Length = 698

 Score =  614 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 389/654 (59%), Positives = 492/654 (75%), Gaps = 5/654 (0%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
                 +    Y A+ I +LEGLEPVR RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG
Sbjct: 48  TPPPAAAGDAEYTAADIEVLEGLEPVRRRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAG 107

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           +A+ I+VSL  +G+LT+ DNGRGIP++ HPK+ +KS LE+I+TTLHAGGKFD+  YE SG
Sbjct: 108 HASWIDVSLSEDGYLTITDNGRGIPIDPHPKYKDKSALEVIMTTLHAGGKFDSKVYETSG 167

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVGISVVNALS+EL V VAR   ++ Q F RG+    LE    V N+RGT + F+PD
Sbjct: 168 GLHGVGISVVNALSEELVVEVARNRKLYRQTFRRGLADGGLELVGDVHNRRGTMVRFKPD 227

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE-IAEKYGIPEKEEFYFPGGLKT 271
            +IFG    F  ARL+KM +SKAYL G V+  W C K    E  G+PE   F+FPGGLK 
Sbjct: 228 AEIFGKTLKFKPARLMKMARSKAYLFGGVEIRWRCAKSLADEANGVPESATFHFPGGLKD 287

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHE 331
           YL+  L     ++ E+F G+T+  G H G VEWA+AW   +  + SYCNT+ T EGGTHE
Sbjct: 288 YLEEALGKERRVTDEVFAGRTQATGRH-GAVEWAVAWFAGDGFVNSYCNTVPTPEGGTHE 346

Query: 332 SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           +GLR AL RG+K Y EL  NK+A  I  DD++ SA G+LSVF+REPEF GQTK KL + +
Sbjct: 347 TGLRYALLRGLKAYGELIGNKKASIITGDDVLTSAAGMLSVFVREPEFVGQTKDKLATNE 406

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           A R  ENA+RD FDH+L  +P +A KLLEWVI+R+EERL+RR++++V RKTA+R+LRLPG
Sbjct: 407 ATRIAENAVRDAFDHWLTASPNQANKLLEWVIDRAEERLKRRQEKDVARKTAVRRLRLPG 466

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS + + GTELFIVEGDSAGGSAKQARNRS QAVLPLRGKILNVA+AG +K+  NQ
Sbjct: 467 KLADCSTSKSDGTELFIVEGDSAGGSAKQARNRSTQAVLPLRGKILNVANAGRDKLVANQ 526

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
            + DL+QALGC TRS Y ++DLRYE+++IMTDADVDGAHIA+LL+TFFY+EM DLI   H
Sbjct: 527 LLSDLIQALGCGTRSNYDDKDLRYERIVIMTDADVDGAHIAALLITFFYKEMPDLINNGH 586

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           L+L  PPL+RI+QG K++YA D+EH++++L+   K   GKIEI RFKGLGEML +QLKET
Sbjct: 587 LYLAVPPLYRISQGGKTLYARDDEHREQLLKTSFKKN-GKIEIGRFKGLGEMLPAQLKET 645

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD  +RTLL+V + +D   + +T+ ++ +LMG K + RF FIQERA F  D+ 
Sbjct: 646 TMDPKRRTLLKVVVGEDE--VIETRSAVEQLMGNKPEARFNFIQERAEFATDLD 697


>gi|300871637|ref|YP_003786510.1| DNA gyrase subunit B [Brachyspira pilosicoli 95/1000]
 gi|300689338|gb|ADK32009.1| DNA Gyrase B subunit [Brachyspira pilosicoli 95/1000]
          Length = 637

 Score =  614 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 253/652 (38%), Positives = 376/652 (57%), Gaps = 23/652 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +    Y + +I++LEGL+PVR RPGMYIG T  + LHHL  EV+DN++DE +AG+   I 
Sbjct: 3   TGEKTYSSKNIQVLEGLDPVRKRPGMYIGSTGSQGLHHLVYEVVDNSIDEAMAGFCKNII 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++     + V D+GRGIPV+ HPK    S LE+++T LHAGGKFDN TY++SGGLHGVG
Sbjct: 63  VTIKKGNIIEVEDDGRGIPVDMHPKL-KISALEVVMTKLHAGGKFDNETYKVSGGLHGVG 121

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS EL   V++   ++ Q + +G+P  P+++  K     GT++TF PDP+IF  
Sbjct: 122 VSVVNALSTELIAEVSKDGKLYRQVYHKGVPEEPVKEVGKSNK-TGTKVTFTPDPEIFET 180

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              +D   L    +  A+L+  ++      +E       P   EFY+ GG++ ++    E
Sbjct: 181 TI-YDYKILANRLRELAFLNRGIRITLIDKRESK-----PVSNEFYYEGGIEMFITHLNE 234

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N+  +  +       +  T    VE A+ + +     I +YCN I T EGGTH  G R A
Sbjct: 235 NKKTLHDKPIYLHKTEDKT---DVEVAMQYVDAYNENIFTYCNNINTTEGGTHLVGFRTA 291

Query: 338 LTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR    +A+      K  I+ + +D     V ++SV I  P+F GQTKTKL + + +  
Sbjct: 292 LTRVYTDFAKKLELDKKNKITFMGEDTREGLVAVVSVKIPNPQFEGQTKTKLGNTEVRAV 351

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454
            E  + +  + Y  QNP     +LE +I   +     RR +    RK A+    LPGKLA
Sbjct: 352 TEKLVVEGLNDYFSQNPKVIKAILEKIISAANAREAARRARDLARRKNALESDSLPGKLA 411

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS+      E+++VEGDSAGG+AK  R+R  QA+LPLRGK+LNV  A  +KI +   + 
Sbjct: 412 DCSEQEVDKCEVYLVEGDSAGGTAKGGRDRHFQAILPLRGKVLNVEKARLDKIIDTDSLK 471

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++ ALGC   + +    +RY ++IIM DAD+DG+HI +LLLTFF++ M  LI+  H+F+
Sbjct: 472 PIIAALGCGVGASFDISKIRYGRIIIMADADIDGSHIRTLLLTFFFRYMRPLIDLGHIFI 531

Query: 575 ISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
             PPL++I+   K+  YA+ +E + KILEE   +   K +I R+KGLGEM A QL ET M
Sbjct: 532 AVPPLYKISFDKKNFVYAYTDEQRDKILEE---NKDRKYDIQRYKGLGEMNADQLWETTM 588

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +   R + +V         +      + LMG +   R +FI+  A ++ ++ 
Sbjct: 589 NPETRLMYQV----LTEDAEKADQLFSMLMGDEVKPRREFIEANAKYVKNLD 636


>gi|13357637|ref|NP_077911.1| DNA gyrase subunit B [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|170762124|ref|YP_001752160.1| DNA gyrase subunit B [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|171920490|ref|ZP_02931785.1| DNA gyrase, B subunit [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|183508595|ref|ZP_02689822.2| DNA gyrase, B subunit [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701878|ref|ZP_02553290.2| DNA gyrase, B subunit [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|11270885|pir||E82937 DNA topoisomerase, DNA gyrase subunit B UU081 [imported] -
           Ureaplasma urealyticum
 gi|6899032|gb|AAF30486.1|AE002107_10 DNA topoisomerase - DNA gyrase subunit B [Ureaplasma parvum serovar
           3 str. ATCC 700970]
 gi|168827701|gb|ACA32963.1| DNA gyrase, B subunit [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|171902958|gb|EDT49247.1| DNA gyrase, B subunit [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|182676050|gb|EDT87955.1| DNA gyrase, B subunit [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701184|gb|EDU19466.1| DNA gyrase, B subunit [Ureaplasma parvum serovar 6 str. ATCC 27818]
          Length = 650

 Score =  614 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 249/666 (37%), Positives = 366/666 (54%), Gaps = 30/666 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
             + +    Y A SI++LEGLE VR RPGMYIG T  + LHH+  E++DN++DE + G+A
Sbjct: 1   MNDSNKEKKYTAESIKVLEGLEAVRKRPGMYIGSTQSEGLHHMIWEIVDNSIDEAMGGFA 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
            ++ V L  +G + V D+GRGIP+E H K    S +E +LT LHAGGKFDN +Y++SGGL
Sbjct: 61  TIVRVILKKDGSVRVEDDGRGIPIEIHEK-TGLSGVETVLTVLHAGGKFDNDSYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN--KRGTRITFRPD 212
           HGVG SVVNALS    V V + +  +  +F  G       K    ++  ++GT I F PD
Sbjct: 120 HGVGASVVNALSKNFKVWVNKNHVQYYVEFINGGHAIEPLKPINNKDVKEKGTTIEFIPD 179

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            +I  +    +   +    +  AYL+  V   +       E      KE++++ GGLK Y
Sbjct: 180 FEIMEENEWDELKIMA-RLKQLAYLNKGVNIEF-------ESELTNRKEKWHYEGGLKEY 231

Query: 273 LQTKLENRSLISSEIFTGKTEKKG--------THRGTVEWAIAWCEENPEITS-YCNTIL 323
           +      +  +   I  G+ EK+         T+    E A  +       T  +CN I 
Sbjct: 232 ITDLNAEKEPLFDLIVYGEEEKEVRVPGHNEQTYNIKCEVAFQYNNSYNNSTHSFCNNIN 291

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G ++A+TR + KYA   +  +     I  +D+      I+SV    P++ G
Sbjct: 292 TTEGGTHEEGFKLAITRLLNKYAVDKKYLKDTDDKITKEDVSEGLTAIISVKHPNPQYEG 351

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK KL + + +  V       F+ +L +NP E+ K++  V++ +E R R  + RE  R+
Sbjct: 352 QTKKKLGNSEVRPYVNEITSIIFEKFLNENPEESKKIVAKVMQAAEARRRSHEAREATRR 411

Query: 442 TA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
            +      LPGKLADCS   +  TE++IVEGDSAGGSAK  R R  QA+LPLRGKI+NV 
Sbjct: 412 KSPFESNSLPGKLADCSNRDSSVTEIYIVEGDSAGGSAKTGREREFQAILPLRGKIINVE 471

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
            A  +KI  N++I +++ A G     ++  E LRY K+IIMTDADVDG+HI  LLLTFFY
Sbjct: 472 KAKIDKIFANEEIQNMITAFGAGIGPEFNIEKLRYSKIIIMTDADVDGSHIRILLLTFFY 531

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           + M  LI+  ++++  PPL++++      YA+ ++  ++I          K  I R+KGL
Sbjct: 532 RYMLPLIQNGNVYIAQPPLYKVSYAKTIKYAYSDQELERIKSTISNI---KYNIQRYKGL 588

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GEM   QL ET MD   R LL+V I            + + LMG     R +FI++ A +
Sbjct: 589 GEMNPDQLWETTMDPKNRLLLKVNIED----AAIADKTFSLLMGDDVAPRKEFIEKNAKY 644

Query: 681 IDDVGT 686
           + ++  
Sbjct: 645 VKNIDA 650


>gi|294849833|ref|ZP_06790573.1| hypothetical protein SKAG_01922 [Staphylococcus aureus A9754]
 gi|294823381|gb|EFG39810.1| hypothetical protein SKAG_01922 [Staphylococcus aureus A9754]
          Length = 644

 Score =  614 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 250/657 (38%), Positives = 379/657 (57%), Gaps = 20/657 (3%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
            A ++ + +DNY A  I++LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AG
Sbjct: 3   TALSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 62

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           YAN IEV ++ + ++ V DNGRGIPV+   K   +  +E+ILT LHAGGKF    Y++SG
Sbjct: 63  YANQIEVVIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 121

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG SVVNALS +L V V R  TI+ Q + +G+P   L++     +K GT I F+ D
Sbjct: 122 GLHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEV-DTTDKTGTVIRFKAD 180

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            +IF +   ++   L +  +  A+L+  ++     +++         ++ +++ GG+K+Y
Sbjct: 181 GEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEE----NVREDSYHYEGGIKSY 236

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++   EN+  I  E       K       VE AI +       + +Y N I T EGGTHE
Sbjct: 237 VELLNENKEPIHDEPIYIHQSKDDI---EVEIAIQYNSGYATNLLTYANNIHTYEGGTHE 293

Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G + ALTR +  Y   ++  +        +D       I+S+   +P+F GQTKTKL +
Sbjct: 294 DGFKRALTRVLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGN 353

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLR 448
            + ++ V+    + F+ +L +NP  A  ++E  ++        ++ +    RK+A+    
Sbjct: 354 SEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVAS 413

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS       E+F+VEGDSAGGS K  R+   QA+LPLRGKILNV  A  ++I 
Sbjct: 414 LPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRIL 473

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           NN +I  ++ A G      +     RY K++IMTDADVDGAHI +LLLTFFY+ M  LIE
Sbjct: 474 NNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 533

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             ++++  PPL+++TQG +  Y +++    K+  E   +   K  I+R+KGLGEM A QL
Sbjct: 534 AGYVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSEL--NPTPKWSIARYKGLGEMNADQL 591

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            ET M+   R LL+V++   +    +   +   LMG   + R +FI++ A +  ++ 
Sbjct: 592 WETTMNPEHRALLQVKLEDAI----EADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 643


>gi|257869692|ref|ZP_05649345.1| topoisomerase IV B subunit [Enterococcus gallinarum EG2]
 gi|257803856|gb|EEV32678.1| topoisomerase IV B subunit [Enterococcus gallinarum EG2]
          Length = 674

 Score =  614 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 242/655 (36%), Positives = 355/655 (54%), Gaps = 34/655 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
             +  Y+ +SI++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DE ++G+ N I+
Sbjct: 3   KKTTEYNDASIQVLEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALSGFGNEID 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +  ++V DNGRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHGVG
Sbjct: 63  VTIHKDNSISVRDNGRGMPVGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
            SVVNALS  L V++ R    + +KF   G P   L+K  K R   GT + F+PD  IF 
Sbjct: 121 ASVVNALSSWLEVSIVRDGIEYQEKFKDGGKPDGTLKKIGKTRKATGTTVRFKPDDTIFT 180

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F    L +  +  A+L   VK   + ++         ++E F F  G+K ++    
Sbjct: 181 T-TKFSYDTLAERLRESAFLLRGVKITLTDER------AELQQEVFLFEEGIKEFVDYLN 233

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRV 336
           E +  ++         K+      VE A  + +   E   S+ N + T +GGTHE G+++
Sbjct: 234 EEKDTLTPV-VYFSGTKEAI---EVEVAFQYNDGYSENVLSFVNNVRTKDGGTHEVGMKI 289

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392
           ++T+   +YA       ++  ++   D       +LS+ + E   +F GQTK KL +  A
Sbjct: 290 SMTKAFNEYARKVGLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTPIA 349

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRL 449
           +  V+N + +   +YL +N   +  L+   I+  E R   RK RE +R    RK     L
Sbjct: 350 RNAVDNVIGEQLGYYLQENSEMSQMLVRKAIKAREAREAARKAREESRSGKKRKKGESLL 409

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
            GKL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I  
Sbjct: 410 SGKLTPAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILK 469

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N++I  ++  +G     ++  ED  Y+KVIIMTDAD DGAHI  LLLTFFY+ M  LIE 
Sbjct: 470 NEEINTMIYTIGAGVGPEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEA 529

Query: 570 KHLFLISPPLFRITQ--GTK--SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
             +++  PPL+++++  G K    YA  ++    + ++  K       + R+KGLGEM A
Sbjct: 530 GKVYIALPPLYKVSKGLGKKAVVEYAWTDDELNAVTKKIGK----GYMLQRYKGLGEMNA 585

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            QL ET MD   RTL+RV I+         +  +  LMG K + R K+I+    F
Sbjct: 586 DQLWETTMDPETRTLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIESHVQF 636


>gi|315640722|ref|ZP_07895824.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Enterococcus italicus DSM
           15952]
 gi|315483477|gb|EFU73971.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Enterococcus italicus DSM
           15952]
          Length = 668

 Score =  614 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 249/655 (38%), Positives = 366/655 (55%), Gaps = 34/655 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
             S+ Y+ +SI++LEGLE VR RPGMYIG TD + LHHL  EV+DNA+DE ++GY + I+
Sbjct: 3   KKSNEYNDASIQVLEGLEAVRKRPGMYIGSTDARGLHHLVYEVVDNAVDEALSGYGDEIK 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V +  +G ++V D GRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHGVG
Sbjct: 63  VIIHKDGSISVQDFGRGMPVGMH--TSGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
            SVVNALS+ L V + R    + Q+F + G P   LEK  K + K GT + F PD  IF 
Sbjct: 121 ASVVNALSEWLEVRIVRDGIEYRQRFVNGGHPEGTLEKIGKTKEKNGTTVRFLPDKGIFS 180

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F    L +  +  A+L   VK  ++  +E  ++      + F++  G+K +++   
Sbjct: 181 TT-KFSYDTLAERLRESAFLLRGVKISFTDLREDDKE------DVFHYEEGIKEFVEYLN 233

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           E + +++  I     EK+      VE A+ + +     I S+ N + T +GGTHE+G++ 
Sbjct: 234 EEKDVLTPII-YFSGEKEMI---EVEVALQYNDGFSETILSFVNNVRTKDGGTHEAGMKA 289

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392
           ALT+ + +YA       ++  ++   D       +LS+ + E   +F GQTK KL +  A
Sbjct: 290 ALTKALNEYARKVGLLKEKDRNLEGSDFREGLSSVLSIRVPEHLLQFEGQTKEKLGTPAA 349

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRL 449
           +  V+NA+ +    YL +N   +  L+   I+  E R   RK RE +R    +K     L
Sbjct: 350 RTAVDNAISEQLGFYLQENNEISQLLVRKAIKAREAREAARKAREESRNGKKKKKGESLL 409

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
            GKL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I  
Sbjct: 410 SGKLTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILK 469

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N++I  ++  +G     ++  ED  Y+K+IIMTDAD DGAHI  LLLTFFY+ M  LIE 
Sbjct: 470 NEEINTMIYTIGAGVGPEFSIEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEA 529

Query: 570 KHLFLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
             +++  PPL+++++G   K V  YA  +E  Q + E+  +       + R+KGLGEM A
Sbjct: 530 GKVYIALPPLYKVSKGTGKKEVIEYAWTDEELQTVTEKVGR----GYMLQRYKGLGEMNA 585

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            QL ET MD   RTL++V I+         +  +  LMG K + R K+I+    F
Sbjct: 586 DQLWETTMDPETRTLVQVRIDD----PAQAERRVTTLMGDKVEPRRKWIESHVQF 636


>gi|116332686|ref|YP_794213.1| DNA gyrase, B subunit [Lactobacillus brevis ATCC 367]
 gi|116098033|gb|ABJ63182.1| DNA gyrase subunit B [Lactobacillus brevis ATCC 367]
          Length = 647

 Score =  614 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 248/661 (37%), Positives = 370/661 (55%), Gaps = 22/661 (3%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
                     +  YDAS I++LEGLE VR RPGMYIG T  + LHHL  E++DN +DE +
Sbjct: 2   ADEKETKAQQAREYDASQIQVLEGLEAVRKRPGMYIGSTSSQGLHHLVWEIVDNGIDEAL 61

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AG+A+ I V+++ +  +TV DNGRGIP+    K   K  LE + T LHAGGKF    Y++
Sbjct: 62  AGFADEIHVTVNQDNSITVTDNGRGIPIGIQKK-TGKPALETVFTILHAGGKFGGGGYKV 120

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRIT 208
           SGGLHGVG SVVNALS +L   V R    ++  F  G   +P+   ++   +++ GT + 
Sbjct: 121 SGGLHGVGASVVNALSTDLEAQVTRDGKTYAIAFDHGHVKTPMHVIKEGLPQDQHGTAVH 180

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F PDP IF +   FD   L    +  A+L+  ++     ++        P +E+F + GG
Sbjct: 181 FLPDPDIFRETTVFDIKTLTTRIRELAFLNKGLRITIRDER-----PEKPTEEDFLYEGG 235

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEG 327
           ++ Y+    EN+  +       + ++ G    TVE A+ + ++      ++ N I T EG
Sbjct: 236 IRHYVDYLNENKETLFEPPIYVEGQENGI---TVEVALQYTDDYHNNLLTFTNNIHTYEG 292

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTHE G + ALTR +  YA   +  +    ++  DD+      ++SV   +P+F GQTKT
Sbjct: 293 GTHEEGFKRALTRVVNDYARQNKLMKDNEANLTGDDVREGLTAVVSVKHPDPQFEGQTKT 352

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444
           KL + DA+  V++   D F  +++++P  A K+++     S+ R+  ++ RE   +K+ +
Sbjct: 353 KLGNSDARTAVDHTFADHFMRFMMEHPDVARKIVDKGTLASKARVAAKRAREVTRKKSGL 412

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLAD +      +ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  
Sbjct: 413 EISNLPGKLADNTSKDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASM 472

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           ++I  N++I  L  A+G    + +    + Y K+I+MTDADVDGAHI +LLLT  Y+ M 
Sbjct: 473 DRILANEEIRSLFTAMGTGFGNDFDVSKVNYHKLILMTDADVDGAHIRTLLLTLVYRYMR 532

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
            L++   +++  PPL+R+ QG    Y   +E  + +L +       K +I R+KGLGEM 
Sbjct: 533 PLLDAGFVYIACPPLYRVRQGKMQRYLDSDEELKDLLGQLPPS--PKPQIQRYKGLGEMD 590

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           A QL ET M+   R LLRV    D     +       LMG K   R +FI+  A+F + +
Sbjct: 591 AEQLWETTMNPENRRLLRV----DAQDAINADQVFTMLMGDKVAPRREFIENNATFAE-L 645

Query: 685 G 685
            
Sbjct: 646 D 646


>gi|291531944|emb|CBK97529.1| DNA gyrase subunit B [Eubacterium siraeum 70/3]
          Length = 692

 Score =  613 bits (1581), Expect = e-173,   Method: Composition-based stats.
 Identities = 242/669 (36%), Positives = 354/669 (52%), Gaps = 33/669 (4%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           N      Y A  I+ILEGLE VR RPGMYIG T E  LHHL  E++DNA+DE +AGY   
Sbjct: 36  NTQVEHAYGADDIQILEGLEAVRKRPGMYIGSTGESGLHHLVYEIVDNAIDEALAGYCTE 95

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V +     + V DNGRGIP   HPK    S   ++ T LHAGGKF    Y++SGGLHG
Sbjct: 96  INVKILPGDVIEVTDNGRGIPTGIHPK-EKISAATVVYTILHAGGKFGGGGYKVSGGLHG 154

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS+ L +TV     I  Q+F  G       K     +K GT++ F+PD  IF
Sbjct: 155 VGASVVNALSEWLELTVYDGKEIHFQRFENGGHYKEQMKVIGTTDKTGTQVRFKPDSTIF 214

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                F    LL   + +A+L+  +K   S  ++  +    P++E   + GG+ +Y++  
Sbjct: 215 HST-EFKYDILLDRLREQAFLNAGLKIVLSDLRDEDK----PKQEVLQYEGGIISYVEWL 269

Query: 277 LENR--SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN--PEITSYCNTILTDEGGTHES 332
            + R    +  ++   +         +VE A  +  +       S+ N I T +GGTHE 
Sbjct: 270 QKKRGAEALHPDVVYIEGLLDNI---SVEIAFQYNTDFNSETFRSFANNIHTVDGGTHEI 326

Query: 333 GLRVALTRGIKKYAELTQN----------------KRAISIISDDLMISAVGILSVFIRE 376
             + AL + I  + +  +                 K  + +  + +  +   ++SV + E
Sbjct: 327 AFKNALNKVINDFVKQYKEQQANNNKKSKKKQDEVKEFVPLSGEAIREAINAVISVKLPE 386

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
            EF GQTK KL + + +  V     +   +Y  ++P     + +  I     R   +K  
Sbjct: 387 CEFEGQTKGKLGNPEVRPVVYKITVEKLTYYFEEHPDTIATIAQKCINAQAARDAAKKAM 446

Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
           E  RK+      LPGKLADCS      TE++IVEGDSAGGSAKQ R+R  QA+LPL GK+
Sbjct: 447 EAKRKSVTDGASLPGKLADCSDTDPEKTEVYIVEGDSAGGSAKQGRDRRFQAILPLWGKM 506

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556
           LNV  A ++K+ NN ++  +V+ALG      +    LRY +V++M DADVDG+HI +LLL
Sbjct: 507 LNVEKARADKVYNNDKLQPVVKALGTGIGEDFDITKLRYGRVVVMADADVDGSHIRTLLL 566

Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616
           TFF++ M  LIE+ H++L  PPLF++ +G K  YA  +E +   + E       K+++ R
Sbjct: 567 TFFFRFMRPLIEEGHVYLAQPPLFKVFRGKKVRYAFSDEERDAYIAELAGESNAKVDVQR 626

Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           +KGLGEM   QL ET MD   RT+++V +           +  + LMG K + R +FI++
Sbjct: 627 YKGLGEMDPEQLWETTMDPAARTMIKVNLED----AAKADEIFSILMGDKVEPRREFIEQ 682

Query: 677 RASFIDDVG 685
            A +  D+ 
Sbjct: 683 NARYAKDLD 691


>gi|56420286|ref|YP_147604.1| DNA topoisomerase IV subunit B [Geobacillus kaustophilus HTA426]
 gi|56380128|dbj|BAD76036.1| DNA topoisomerase IV subunit B [Geobacillus kaustophilus HTA426]
          Length = 645

 Score =  613 bits (1581), Expect = e-173,   Method: Composition-based stats.
 Identities = 249/656 (37%), Positives = 362/656 (55%), Gaps = 34/656 (5%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            + A+  Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AGY N 
Sbjct: 2   AKHATYEYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGYGNY 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V +  +  +TV+D GRG+PV  H     K T E+ILT LHAGGKF    Y+ SGGLHG
Sbjct: 62  IFVQIHKDNSITVLDEGRGMPVGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHG 119

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS+ L VT+ R   I+ Q+F  G       +K    NK GT I F+PDP IF
Sbjct: 120 VGASVVNALSEWLVVTIHRDGFIYRQRFEHGGKPVTTLEKIGTTNKTGTIIQFKPDPTIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                FD   L +  +  A+L   +K     ++          +E F++  G++ ++   
Sbjct: 180 STTV-FDYETLSERLRESAFLLKGLKIELVDER-------TGMREVFHYENGIEAFVAYL 231

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335
            E + ++         E+ G     VE+A  + +   E   S+ N + T +GGTHE+G +
Sbjct: 232 NEEKDVLHPV-VYFAGEQNGI---EVEFAFQFHDGYSENVLSFVNNVRTKDGGTHEAGAK 287

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLD 391
            A+TR   +YA       ++  ++   D+      ++SV I E   +F GQTK KL + +
Sbjct: 288 TAMTRVFNEYARRVGLLKEKDKNLEGTDIREGLSAVVSVRIPEHLLQFEGQTKGKLGTSE 347

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR--- 448
           A+  V+  + +   ++L +NP  +  L++  I   + R   RK RE  R    RK +   
Sbjct: 348 ARSAVDAVVSEQLMYFLQENPDVSAMLIKKAIRAYQAREAARKAREEARSGKKRKGKEAL 407

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           L GKL           EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I 
Sbjct: 408 LSGKLTPAQGRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLGDIL 467

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            N++I  ++ A+G    + +  +D+ Y+KVIIMTDAD DGAHI  LLLTFFY+ M  LIE
Sbjct: 468 KNEEINTIIHAIGGGVGADFSLDDVNYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIE 527

Query: 569 QKHLFLISPPLFRITQ--GTKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
              +++  PPL++I++  G   +  YA  +E  ++I ++  +       I R+KGLGEM 
Sbjct: 528 AGKVYIALPPLYKISKKSGKNEIVEYAWTDEQLKEITKKMGR----GYTIQRYKGLGEMN 583

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           A QL ET M+   RTL+RV I          +  +  LMG K + R K+I+   +F
Sbjct: 584 ADQLWETTMNPQTRTLIRVRIED----AARAERRVTTLMGDKVEPRRKWIETHVAF 635


>gi|190710587|gb|ACE95124.1| gyrase subunit B [Bacillus thuringiensis serovar galleriae]
          Length = 627

 Score =  613 bits (1581), Expect = e-173,   Method: Composition-based stats.
 Identities = 263/644 (40%), Positives = 378/644 (58%), Gaps = 21/644 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY + I VS
Sbjct: 1   ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V DNGRGIPV    K   +  +E+I+T LHAGGKF    Y++SGGLH V  S
Sbjct: 61  IEEDNSIRVTDNGRGIPVGIQKKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHDVVAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS EL V V R+  I  QK+ RGIP++ L+      ++ GT   F+PDP+IF +  
Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +D   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++
Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I  E    +  K G     VE ++ + E       S+ N I T EGGTHE G + ALT
Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E
Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +   + F+ +L++NP  A K++E   +        ++ +    RK+A+    LPGKLADC
Sbjct: 350 SVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  +
Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G      +  E  RY KVIIMTDADVDGAHI +LLLTFFY+ M  +IE  ++++  
Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGNIYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLF+I QG K  YA++++  +KIL E     K    I R+KGLGEM  +QL ET MD  
Sbjct: 530 PPLFKIQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            R+LL+V +   +    +  ++   LMG K + R  FIQE A +
Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKY 627


>gi|325678556|ref|ZP_08158167.1| DNA gyrase, B subunit [Ruminococcus albus 8]
 gi|324109775|gb|EGC03980.1| DNA gyrase, B subunit [Ruminococcus albus 8]
          Length = 665

 Score =  613 bits (1581), Expect = e-173,   Method: Composition-based stats.
 Identities = 254/671 (37%), Positives = 377/671 (56%), Gaps = 20/671 (2%)

Query: 22  KLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEV 81
           K  K  EI D+ + +    S+NYD + I +LEGLEPVR+RPGMYIG T  K LHHL  E+
Sbjct: 7   KEIKEVEIEDTESISQIDKSNNYDENQIEVLEGLEPVRVRPGMYIGSTGPKGLHHLVYEI 66

Query: 82  IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141
           +DNA+DE +AGY   I V +     + VVDNGRGIP   HPK    S   ++ T LHAGG
Sbjct: 67  VDNAIDEALAGYCTEIIVDILPGDVIRVVDNGRGIPTGIHPK-EGISAATVVYTVLHAGG 125

Query: 142 KFDNSTYEISGG-LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           KF         G LHGVG SVVNALS+ L +TV   + +  Q+F RG     ++      
Sbjct: 126 KFGGGGGYKVAGGLHGVGASVVNALSEYLELTVYDGSHVHFQRFDRGQYSEAMKVIGDT- 184

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
           +K GT + F+PDP IF +   FD   LLK  + +A+L+  +K  +S  +        P  
Sbjct: 185 DKTGTEVKFKPDPLIFQETTTFDYEVLLKRLREQAFLNAGIKIIFSDLR----NAEKPVT 240

Query: 261 EEFYFPGGLKTYLQTKLENR--SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           E  ++ GG++ +++   + R    +S ++      +        E A+ + +     I S
Sbjct: 241 ETLHYEGGIRQFVEHIHKTRGVEPLSEDVIYINGVEDDMF---AEIALQYNDTYNEIILS 297

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIR 375
           + N I T +GG+HE   + ALT+ + +Y +     +      + +D       I+SV + 
Sbjct: 298 FANNIHTPDGGSHEMAFKSALTKILNEYGKAHNLIKDNDDALMGEDCREGLTAIVSVKLT 357

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
             EF GQTK +L + + +  V+  L++   +YL +NP  A  + +  ++  + R   ++ 
Sbjct: 358 NCEFEGQTKGRLGNPEVRPFVDKMLKEKLRNYLEENPAVAKAIFDKSLQAQKAREAAKRA 417

Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE   RK+ +    LPGKLADCS+     TE++IVEGDSAGGSAK+ R+R  QA+LPL G
Sbjct: 418 RELTRRKSVLESASLPGKLADCSERDMTMTEIYIVEGDSAGGSAKEGRDRRYQAILPLWG 477

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           K+LNV  A  +K+  N ++M +V ALG      +    LRY KVIIM DADVDG+HI +L
Sbjct: 478 KMLNVEKARIDKVYGNDKLMPVVTALGTSIGEDFDISKLRYGKVIIMADADVDGSHIRTL 537

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           LLTFF++ M  LIEQ+H++L  PPLF++ +  K  YA  +E + K + E  + GK K+ +
Sbjct: 538 LLTFFFRFMRPLIEQEHVYLAQPPLFKVERAKKVRYAFTDEERDKYIAELSEGGKLKVAV 597

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
            R+KGLGEM   QL ET MD  +RT+++V +   +       +    LMG K   R +FI
Sbjct: 598 QRYKGLGEMDPEQLWETTMDPERRTMIKVTMEDAVK----ADEIFTILMGDKVGPRKEFI 653

Query: 675 QERASFIDDVG 685
           ++ A ++ ++ 
Sbjct: 654 EKNAEYVRNLD 664


>gi|297570618|ref|YP_003696392.1| DNA gyrase subunit beta [Arcanobacterium haemolyticum DSM 20595]
 gi|296930965|gb|ADH91773.1| DNA gyrase, B subunit [Arcanobacterium haemolyticum DSM 20595]
          Length = 682

 Score =  613 bits (1581), Expect = e-173,   Method: Composition-based stats.
 Identities = 251/690 (36%), Positives = 369/690 (53%), Gaps = 33/690 (4%)

Query: 20  SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79
               +K+ E  +  A      ++ Y+AS+I +LEGLE VR RPGMYIG T E+ LHHL  
Sbjct: 1   MSDEQKTAEDTEQRAGTVAQGTE-YNASNITVLEGLEAVRKRPGMYIGSTGERGLHHLVY 59

Query: 80  EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139
           EV+DN++DE +AGYA+ I V+L  NG + V D+GRGIPV+ HP     + +++++T LHA
Sbjct: 60  EVVDNSVDEALAGYASEITVTLLDNGGVKVEDDGRGIPVDIHP-TEGVAAVQVVMTVLHA 118

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKF N +Y +SGGLHGVGISVVNALS  +   V R   ++   +  G+P++PLE+  + 
Sbjct: 119 GGKFGNGSYAVSGGLHGVGISVVNALSTRMDTEVRRDGYVWRISYENGVPVAPLEQ-GEP 177

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------- 249
            +K GT  TF P+  IF     FD   L +     A+L+  +K     ++          
Sbjct: 178 TDKTGTTQTFWPNADIFET-VEFDFDTLRQRFHQMAFLNKSLKITLIDERETAVVEGDEV 236

Query: 250 --EIAEKYGIPEKEEFYFPGGLKTYLQTKLENR--SLISSEIFTGKTEKKGTHRGTVEWA 305
             E         +  + +  GL  Y+   ++ +    +       + E K     +VE A
Sbjct: 237 TGEDDATETKHTQVTYQYDNGLHDYVTHLIKTKKSEPVHEHPIYFEAEDK-ERVISVEVA 295

Query: 306 IAWCEENPEITS-YCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDL 362
           + W     E    + NTI T EGGTHE G R ALT  I KYA       ++  ++  DD+
Sbjct: 296 MQWTNAYSESLHTFANTINTTEGGTHEEGFRTALTSIINKYARDKAILKEKDANLTGDDI 355

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
                 ++SV + EP+F GQTKTKL + +A+  V+         +L  +P E  +++   
Sbjct: 356 REGLTAVISVKLGEPQFEGQTKTKLGNTEARTFVQQTTYAQLTDWLDMHPSEGKEIIRKA 415

Query: 423 IERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
           ++    RL  RK RE  R+ + +    +PGKL DC+       E+FIVEGDSAGGSA   
Sbjct: 416 MQAQTARLAARKAREATRRKSVLESAAMPGKLKDCTSRKPEECEIFIVEGDSAGGSAVNG 475

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541
           R+ ++QA++P+RGKILNV  A  ++  ++  I  L+ A G     ++  + LRY K++ M
Sbjct: 476 RDPNHQAIMPIRGKILNVEKARLDRALSSDSIQSLITAFGTGVGEEFDIDKLRYHKIVFM 535

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ-GTKSVYAHDEEHKQKI 600
            DADVDG HIA+LLLT  Y+ M  LIE  +++L  PPL+R+     +  Y   ++ +   
Sbjct: 536 ADADVDGQHIATLLLTLVYRYMRPLIEHGYIYLAMPPLYRLKWTNAEHEYVFSDKERDIK 595

Query: 601 LEEFKKHGKGKIE-----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
           LEE    GK   +     I R+KGLGEM   +L +T M+   RTL RV I +       T
Sbjct: 596 LEEGLAAGKRLPKAEGQGIQRYKGLGEMNDHELWDTTMNPETRTLKRVSIGE----AAAT 651

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
            +S + LMG     R  FIQ  A  +  + 
Sbjct: 652 DESFSVLMGEDVASRRSFIQRNAHDVRFLD 681


>gi|255535639|ref|YP_003096010.1| DNA gyrase subunit B [Flavobacteriaceae bacterium 3519-10]
 gi|255341835|gb|ACU07948.1| DNA gyrase subunit B [Flavobacteriaceae bacterium 3519-10]
          Length = 644

 Score =  613 bits (1581), Expect = e-173,   Method: Composition-based stats.
 Identities = 249/652 (38%), Positives = 379/652 (58%), Gaps = 21/652 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           +   Y ASSI+ LEG+E VR+RP MYIG    + LHHL  EV+DN++DE +AG+ + I V
Sbjct: 2   SQKEYTASSIQALEGMEHVRLRPSMYIGDVGTRGLHHLVYEVVDNSIDEALAGHCDTISV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            +     ++V DNGRGIPV+ H K   KS LE+++T + AGGKFD  +Y++SGGLHGVG+
Sbjct: 62  VIHEGESISVKDNGRGIPVDMHEK-EQKSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           S VNALS  L  TV R   ++ QK+S G  L  + +      +RGT + F+PD  IF + 
Sbjct: 121 SCVNALSTSLVATVNRDGKVYQQKYSEGKALDKVHEIG-TTGERGTEVFFQPDATIFQET 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             ++   L    +  ++L+  +    + ++   E       E F+  GGL+ +++    N
Sbjct: 180 V-YNYDTLAARLRELSFLNKGITITLTDERRPNEDG-TFVSEVFHSDGGLREFVEFIDGN 237

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVAL 338
           R  I S +   + +        VE A+ +     E    Y N I T EGGTH +G R AL
Sbjct: 238 RESIMSNVIYMEGDNNDIP---VEVAMRYNTSYNENLHSYVNNINTHEGGTHLAGFRRAL 294

Query: 339 TRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +KK+A+      K  + +  DD       ++SV + EP+F GQTKTKL + +    V
Sbjct: 295 TRTLKKFADELGIPAKEKVEVTGDDFREGLTAVISVKVMEPQFEGQTKTKLGNSEVSGAV 354

Query: 397 ENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           +  + +   ++L +NP EA  +++  V+     +  ++ +  V RK+ +    LPGKL+D
Sbjct: 355 DKIVGEMLTNFLEENPNEAKIIVQKVVLAAKARQAAKKARELVQRKSPMGGSGLPGKLSD 414

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS      +ELF+VEGDSAGG+AKQ R+R  QA+LPLRGKILNV  +   K+ +N++I +
Sbjct: 415 CSSKDPAISELFLVEGDSAGGTAKQGRDRHFQAILPLRGKILNVEKSMLHKVYDNEEIKN 474

Query: 516 LVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           +  ALG    ++          LRY KV+IMTDAD+DG+HI++L+LTFF++ M +LIE  
Sbjct: 475 IYTALGVSVGTEEDSKALNISKLRYHKVVIMTDADIDGSHISTLILTFFFRYMKELIENG 534

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++F+  PPL+ + +G K +YA++E+ +++   E    GKG +E+ R+KGLGEM   QL E
Sbjct: 535 YIFIAQPPLYLLKKGQKKIYAYNEKEREEFTLELAPDGKG-VEVQRYKGLGEMNPEQLWE 593

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           T ++   R L +V I     SL D  +  + LMG +   R +FI++ A +  
Sbjct: 594 TTLNPEHRILKQVTIE----SLADADNVFSMLMGDEVPPRREFIEKNAVYAK 641


>gi|89054416|ref|YP_509867.1| DNA topoisomerase IV subunit B [Jannaschia sp. CCS1]
 gi|88863965|gb|ABD54842.1| DNA topoisomerase IV subunit B [Jannaschia sp. CCS1]
          Length = 653

 Score =  613 bits (1581), Expect = e-173,   Method: Composition-based stats.
 Identities = 351/647 (54%), Positives = 453/647 (70%), Gaps = 10/647 (1%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +YDASSI +LEGLEPVR RPGMYIGGTDE+ALHHL +EV+DN+MDE +AGYA  IEV L
Sbjct: 13  QSYDASSIEVLEGLEPVRKRPGMYIGGTDERALHHLVAEVLDNSMDEAVAGYATRIEVEL 72

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  +T+ DNGRG+P + HPKFP KS LE+IL TLHAGGKF    Y+ SGGLHGVG SV
Sbjct: 73  HADHAVTIRDNGRGMPFDPHPKFPGKSALEVILCTLHAGGKFSGKAYQTSGGLHGVGASV 132

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALSD + V VAR   +  Q+FSRG+PL P+ +     N+RGT  TF  D +IFG    
Sbjct: 133 VNALSDSMVVQVARDRKVVEQRFSRGLPLGPVTEIGAAPNRRGTTTTFHADEQIFGS-HR 191

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F  ARL+KM QSKAYL   V+  W   K   +    P +  F+FPGGL  YL   L   +
Sbjct: 192 FKPARLMKMVQSKAYLFSGVEIRW---KSAIDDGETPTEATFHFPGGLSDYLTETLGKTA 248

Query: 282 LISSEIFTGKTE--KKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVAL 338
             +   F GK E  ++    G+VEWAI+W    +  I S+CNT+ T EGGTHE+G   A+
Sbjct: 249 TYTEIPFAGKVEFQQRFNVPGSVEWAISWTPARDGFIQSFCNTVPTPEGGTHEAGFWAAI 308

Query: 339 TRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +GI+ Y EL  NK+A +I  DD+   A  ++S FI EPEF GQTK +L + +AQR VE 
Sbjct: 309 LKGIRAYGELAGNKKAANITRDDIATGAGALVSCFIAEPEFVGQTKDRLATTEAQRLVEQ 368

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
           A+RD FD++L QN  EA  +L++++ R+EERLRRR ++E  RK+A +KLRLPGKL DCSQ
Sbjct: 369 AVRDHFDNWLGQNTKEAGAILDFLVLRAEERLRRRAEKETARKSATKKLRLPGKLVDCSQ 428

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
           +   GTELFIVEGDSAGGSAK ARNR NQA+LPLRGKILNV  A S K+ +N +I DL Q
Sbjct: 429 SARDGTELFIVEGDSAGGSAKMARNRKNQALLPLRGKILNVLGAASGKLTSNAEISDLCQ 488

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG    +++  EDLRY+K+IIMTDADVDGAHIA+LL+TFF+ +M  +I+  HL+L  PP
Sbjct: 489 ALGVGMGTKFNIEDLRYDKIIIMTDADVDGAHIAALLMTFFFSQMRPMIDGGHLYLACPP 548

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           LFR+TQG + VY  DE+ + +++E+    GKGKI++SRFKGLGEM A  LKET MD   R
Sbjct: 549 LFRLTQGARRVYCLDEQERDEMMEK-GLGGKGKIDVSRFKGLGEMDAKDLKETTMDPESR 607

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            L+RV ++ D+    +T D + +LMG K + RF++IQE A F++++ 
Sbjct: 608 KLIRVSVDDDV--PGETGDLVERLMGKKPELRFQYIQENARFVEELD 652


>gi|146276459|ref|YP_001166618.1| DNA topoisomerase IV subunit B [Rhodobacter sphaeroides ATCC 17025]
 gi|145554700|gb|ABP69313.1| DNA topoisomerase IV, B subunit [Rhodobacter sphaeroides ATCC
           17025]
          Length = 663

 Score =  613 bits (1581), Expect = e-173,   Method: Composition-based stats.
 Identities = 342/647 (52%), Positives = 449/647 (69%), Gaps = 10/647 (1%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + YDASSI +LEGLEPVR RPGMYIGGTDE+ALHHL +E++DN+MDE +AG+A  IEV L
Sbjct: 23  ETYDASSIEVLEGLEPVRKRPGMYIGGTDERALHHLVAEILDNSMDEAVAGHATRIEVEL 82

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  +T+ DNGRGIPV+ HPKFP KS LE+IL TLHAGGKF    Y+ SGGLHGVG SV
Sbjct: 83  HADHSVTIRDNGRGIPVDPHPKFPGKSALEVILCTLHAGGKFSGKAYQTSGGLHGVGASV 142

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALSD + V VAR   ++ Q F+RGI   P++      N+RGT ITF PDP+IF     
Sbjct: 143 VNALSDTMRVEVARNRELWVQSFARGIAQGPVKMVGAASNRRGTTITFHPDPEIF-GHLQ 201

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F  ARL+KM +SKAYL   V+  W   K        P++  F+FPGGL  YL  +L   S
Sbjct: 202 FKPARLMKMARSKAYLFSGVEIRW---KSAIPDGDTPQEAVFHFPGGLGDYLAEQLSGAS 258

Query: 282 LISSEIFTGK--TEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVAL 338
             + + F GK   ++K    G+VEWAI W    +  I SYCNT+ T EGGTHESG   A+
Sbjct: 259 TYAEKPFAGKVGFQEKFGVPGSVEWAINWTPARDGFIQSYCNTVPTPEGGTHESGFWSAI 318

Query: 339 TRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +GI+ Y EL +N++A  I  +D++     ++SVFIREP+F GQTK +L + +A + VEN
Sbjct: 319 LKGIRAYGELVKNRKADQITREDMLAGGSALISVFIREPQFVGQTKDRLSTEEAAKLVEN 378

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
           A+RD FD++L  N   A  +L++++ R+EERLRRR+++E  RK+A +KLRLPGKL DCS 
Sbjct: 379 AVRDHFDNWLAANTKSAGAILDFLVLRAEERLRRRQEKETQRKSATKKLRLPGKLVDCSA 438

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
               GTELFIVEGDSAGGSAK AR+R+ QA+LPLRGKILNV  A S K+  N +I DL  
Sbjct: 439 TARDGTELFIVEGDSAGGSAKMARDRTLQALLPLRGKILNVLGAASGKMGANAEINDLCL 498

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG    +++  +DLRY+K+IIMTDADVDGAHIASLL+TFF+ +M  LI++ HL+L  PP
Sbjct: 499 ALGTGMGTRFNIDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDRGHLYLACPP 558

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+R+TQG K +Y  D+  K+  L +    GKGKI++ RFKGLGEM A  LK+T M+   R
Sbjct: 559 LYRLTQGAKRLYVADDVEKELWLAK-GLGGKGKIDVQRFKGLGEMDAKDLKDTTMNPATR 617

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            L+RV I++D     +T D + +LMG K + RF++IQE A F++++ 
Sbjct: 618 KLIRVSIDEDE--PGETGDLVERLMGKKPELRFQYIQENARFVEELD 662


>gi|255530774|ref|YP_003091146.1| DNA gyrase subunit B [Pedobacter heparinus DSM 2366]
 gi|255343758|gb|ACU03084.1| DNA gyrase, B subunit [Pedobacter heparinus DSM 2366]
          Length = 652

 Score =  613 bits (1581), Expect = e-173,   Method: Composition-based stats.
 Identities = 253/662 (38%), Positives = 373/662 (56%), Gaps = 21/662 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              +    NY A +I++LEGLE VR RP MYIG T  K LHHL  EV+DN++DE +AG+A
Sbjct: 2   SEEKDPKSNYSADNIQVLEGLEAVRKRPSMYIGDTGIKGLHHLVYEVVDNSIDEALAGHA 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I V++  +  + V DNGRGIP   + K   KS LEI++T LHAGGKFD  TY++SGGL
Sbjct: 62  DTIYVNILKDNSIRVEDNGRGIPTGINTK-EQKSALEIVMTVLHAGGKFDKDTYKVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+S VNALS  L   V R+  I+ Q+++ G PL  ++         GT ITF PDP 
Sbjct: 121 HGVGVSCVNALSTHLKAEVHREGKIWVQEYNIGKPLYEVKSIGDTDKL-GTIITFTPDPT 179

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     +    L    +  ++L+  +K   + ++E  E       E F+  GGLK ++Q
Sbjct: 180 IFTQTTEYRYDTLASRLRELSFLNKGIKLTLTDERETLENG-EFLSELFHSEGGLKEFVQ 238

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESG 333
                R  +  E    +  K G     VE A+ + +   E   SY N I T EGGTH +G
Sbjct: 239 FLDGTRPSLIPEPIYVEGIKNGIP---VELALQYNDSYSENVHSYVNNINTHEGGTHIAG 295

Query: 334 LRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R  LTR +K YA+ +   + +      DD       ++SV ++EP+F GQTKTKL + +
Sbjct: 296 FRRGLTRTLKAYADKSGLLKNVKFEITGDDFREGLTAVISVKVQEPQFEGQTKTKLGNSE 355

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLP 450
               V+ A+ +    YL + P EA  ++  VI   +     R+ +  V RK+ +    LP
Sbjct: 356 VMGAVDIAVGEALGIYLEEYPKEARMIVNKVILAATARAAARKAREMVQRKSVMGGSGLP 415

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS +     EL++VEGDSAGG+AKQ R+R+ QA+LPL+GKILNV  A   KI  N
Sbjct: 416 GKLADCSDSDPEKCELYLVEGDSAGGTAKQGRDRNFQAILPLKGKILNVEKAMEHKIYEN 475

Query: 511 QQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
            +I ++  ALG    ++  ++      LRY K++IMTDAD+DG+HI +L+LTFF++ M  
Sbjct: 476 DEIKNMFTALGVSIGTEEDDKALNLAKLRYHKIVIMTDADIDGSHITTLILTFFFRYMKA 535

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEML 624
           LIE  ++++ +PPL+++ +G +  Y  +++ +   ++  K  GK   + I R+KGLGEM 
Sbjct: 536 LIEAGYVYIAAPPLYQVKKGKEFEYCWNDKQRDDAVQRLKGAGKEESVHIQRYKGLGEMN 595

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           A QL +T ++   RTL++  I            + + LMG +   R  FI+  A +   +
Sbjct: 596 AEQLWDTTLNPATRTLMQATIENAAEC----DHTFSMLMGDEVAPRRDFIERNAKYAK-I 650

Query: 685 GT 686
             
Sbjct: 651 DA 652


>gi|282859419|ref|ZP_06268525.1| DNA gyrase, B subunit [Prevotella bivia JCVIHMP010]
 gi|282587817|gb|EFB93016.1| DNA gyrase, B subunit [Prevotella bivia JCVIHMP010]
          Length = 656

 Score =  613 bits (1580), Expect = e-173,   Method: Composition-based stats.
 Identities = 266/664 (40%), Positives = 383/664 (57%), Gaps = 27/664 (4%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           Q   +NY AS+I++LEGLE VR RP MYIG   EK LHHL +E +DN++DE +AGY   I
Sbjct: 5   QEHENNYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLINETVDNSIDEAMAGYCTDI 64

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           EV+++ +  +TV DNGRGIPV+ H K    S LE+++T LHAGGKFD  +Y++SGGLHGV
Sbjct: 65  EVTINEDNSITVEDNGRGIPVDEHEKLHK-SALEVVMTVLHAGGKFDKGSYKVSGGLHGV 123

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+S VNALS  +   V R+  I+ Q++ +G PL P++   +     GTR  F PD  IF 
Sbjct: 124 GVSCVNALSKHMMSQVFREGKIYQQEYEKGKPLYPVKVVGETEK-TGTRQQFWPDGTIFT 182

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F    + +  +  AYL+  +K      +   E       E F+   GLK Y++   
Sbjct: 183 TTV-FQWDVVARRMRELAYLNAGIKITLIDLRPDPETGKT-RTEIFHAKDGLKEYVRYVD 240

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            +R  + +++   K+EK+G     +E AI +  +    I SY N I T EGGTH  G R 
Sbjct: 241 RHRQHLFNDVIYLKSEKQGVP---IEVAIMYNTDYTENIHSYVNNINTIEGGTHLQGFRT 297

Query: 337 ALTRGIKKYAEL------TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           ALTR +K YA+          K  I I  +D       ++SV + EP+F GQTKTKL + 
Sbjct: 298 ALTRTLKTYADNDAQISKQIEKAKIEITGEDFREGLTAVISVKVAEPQFEGQTKTKLGNS 357

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRL 449
           +    V+ A+ +    YL ++P EA  +   V+  +  R+  RK RE   RK  +    L
Sbjct: 358 EVSGAVQQAVGEALSAYLEEHPSEAKMICNKVVLAATARIAARKARESVQRKNVMTGGGL 417

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADCS       E+F+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV      ++  
Sbjct: 418 PGKLADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQRHRVFE 477

Query: 510 NQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            + +M+++Q++G R         +   + LRY+K+IIMTDADVDG+HI +L++T FY+ M
Sbjct: 478 AESVMNIIQSIGVRFGVEEDSDFEANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRYM 537

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK-IEISRFKGLGE 622
             +IEQ HLF+ +PPL++ T    S Y + E+ +Q  ++++    +GK I   R+KGLGE
Sbjct: 538 PKVIEQGHLFIATPPLYKCTYKKVSEYCYTEQQRQAFIDKYGAGEEGKTIHTQRYKGLGE 597

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           M   QL ET MD   R L +V I     +  D  +  + LMG   + R +FI++ A++  
Sbjct: 598 MNPEQLWETTMDPKTRLLKQVTIE----NAADADEVFSMLMGDDVEPRREFIEQNATYA- 652

Query: 683 DVGT 686
           ++  
Sbjct: 653 NIDA 656


>gi|118587497|ref|ZP_01544922.1| DNA gyrase, B subunit [Oenococcus oeni ATCC BAA-1163]
 gi|71466856|emb|CAH41002.1| DNA gyrase subunit B [Oenococcus oeni]
 gi|118432147|gb|EAV38888.1| DNA gyrase, B subunit [Oenococcus oeni ATCC BAA-1163]
          Length = 652

 Score =  613 bits (1580), Expect = e-173,   Method: Composition-based stats.
 Identities = 252/656 (38%), Positives = 375/656 (57%), Gaps = 22/656 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
             S +++Y  SSI+ILEGLE VR RPGMYIG T    LHHL  E+IDN +DE +AG+A+ 
Sbjct: 11  APSDNNSYGGSSIQILEGLEAVRKRPGMYIGSTASSGLHHLVWEIIDNGIDEALAGFAHH 70

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           + ++++ +  +T+ D+GRG+PVE  PK   +  +E + T LHAGGKFD+ +Y++SGGLHG
Sbjct: 71  VTLTIEKDNSITITDDGRGVPVEIQPK-TGRPAMEAVFTILHAGGKFDSKSYKVSGGLHG 129

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKI 215
           VG SVVNALS E+ V V R N I+   F RG   + ++  ++    KRGT + F PDP I
Sbjct: 130 VGASVVNALSKEMDVRVYRDNKIYYMDFERGHIKTEMKLLDEPMRLKRGTIVHFAPDPDI 189

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   FD   L    +  A+L+  ++   +  +    K      E F + GG+  Y++ 
Sbjct: 190 FRETIVFDYRTLASRIRELAFLNKGLRLSITDKRVDPVKN-----ESFMYEGGIAEYVKF 244

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGL 334
             +N+  +  E    + E+ G     VE A+ + +     + S+ N I T EGGTHE+G 
Sbjct: 245 LNKNKQPLFPEPVYVEGEENGIQ---VEVALQYTDAVAETLMSFTNNIHTHEGGTHETGF 301

Query: 335 RVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           ++ALTR I  Y +     +        +D+      I+S+   +P+F GQTKTKL + DA
Sbjct: 302 KMALTRIINDYVKKKGILKDSDDPLSGEDVREGITAIVSIKHPDPQFEGQTKTKLGNTDA 361

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
           Q+ V +     F+ ++++NP  A  +    +  S+ R+  +K R+   +K+ +    L G
Sbjct: 362 QQAVNHQFSTIFNRFMMENPETARAIANKGLIASKARVAAKKARDLTRKKSGLEISALAG 421

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLAD +      +ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  +K+  N+
Sbjct: 422 KLADNTSRDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKATLDKVLANE 481

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  L  A+G     ++      Y KVIIMTDADVDGAHI +LLLT F++ M  LI+  +
Sbjct: 482 EIRSLFTAMGTGFGEEFDISKAHYHKVIIMTDADVDGAHIRTLLLTLFFRYMRPLIDAGY 541

Query: 572 LFLISPPLFRITQGT--KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +++  PPL+ +  G   + VY   +E   +         K +  I R+KGLGEM A QL 
Sbjct: 542 IYIAQPPLYGVAIGNSDQRVYLDSDEELDQYTATLPASPKPR--IQRYKGLGEMDAVQLW 599

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +T MD   R LLRV    D     +   + + LMG + + R +FI++ A F++D+ 
Sbjct: 600 DTTMDPKHRRLLRV----DPEYQPEVDTTFDMLMGDRVEPRREFIEDNAQFVEDLD 651


>gi|313900991|ref|ZP_07834481.1| DNA gyrase, B subunit [Clostridium sp. HGF2]
 gi|312954411|gb|EFR36089.1| DNA gyrase, B subunit [Clostridium sp. HGF2]
          Length = 647

 Score =  613 bits (1580), Expect = e-173,   Method: Composition-based stats.
 Identities = 255/652 (39%), Positives = 374/652 (57%), Gaps = 21/652 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
                 +Y A  I++LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AG+A  
Sbjct: 13  EDKVDHSYTADDIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGFATD 72

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IE++++ N  + V DNGRG+P     K    S +E I T LHAGGKF    Y++SGGLHG
Sbjct: 73  IEITIEKNNIIRVEDNGRGMPTGIVEK-TGISGVETIFTVLHAGGKFGGGAYKVSGGLHG 131

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS+ L V V +    F  +F  G   +   K      K G+ + F+ DP+IF
Sbjct: 132 VGASVVNALSEWLEVNVHQNGHEFFLRFEDGGKATGPLKIINDSEKHGSIVRFKADPEIF 191

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   +D   L    +  A+L+  ++     ++E       P++ E+ + GG++ Y++  
Sbjct: 192 QETQEYDFDTLNARIRQLAFLNKSIRLVLCDEREA-----EPKRIEYKYDGGIRQYVEYL 246

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            +N++ +  E+   +  + G      E A+ + +   P I S+CN I T EGGTHE G R
Sbjct: 247 NKNKTPLHEEVVYVEGIEDGIL---AEIAMQYNDGYIPSIYSFCNNINTMEGGTHEDGFR 303

Query: 336 VALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           +ALTR I  YA      K+  ++  DD+      I+SV   +P++ GQTKTKL + + ++
Sbjct: 304 LALTRIINAYAREQGMIKKDETLAGDDVREGLTAIISVKHPDPQYEGQTKTKLGNSEVRK 363

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            V + L +  D + ++NP  A  +++  I  S+ RL  +K RE   RK+A+    LPGKL
Sbjct: 364 IVSSILGEQLDRFFMENPETAKIIVDKAILASKARLAAKKARELTRRKSALEITSLPGKL 423

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS   A   E++IVEGDSAGGSAKQ RN   QA+LPLRGKILNV  A  ++I  N +I
Sbjct: 424 ADCSSKDASECEIYIVEGDSAGGSAKQGRNSKFQAILPLRGKILNVEKARLQRIFENNEI 483

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A GC    +     LRY K+IIMTDADVDGAHI +L+LTFFY+ +  +IE  +++
Sbjct: 484 RSMITAFGCGIGEEMDVSKLRYHKIIIMTDADVDGAHICTLMLTFFYRYLRPIIEGGYVY 543

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           +  PPLF++ +G +  Y + EE  + +     ++    + + R+KGLGEM   QL ET M
Sbjct: 544 IAMPPLFKVAKGNRVEYVYKEEEVETVRASMGEN----VNVQRYKGLGEMNPEQLWETTM 599

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D   RTL +V I+  +    +       LMG + + R  FIQE A +   + 
Sbjct: 600 DPAFRTLKQVNIDDAM----EADSIFEMLMGEEVEPRRDFIQENAIYAT-LD 646


>gi|84683525|ref|ZP_01011428.1| DNA topoisomerase IV, B subunit [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84668268|gb|EAQ14735.1| DNA topoisomerase IV, B subunit [Rhodobacterales bacterium
           HTCC2654]
          Length = 650

 Score =  613 bits (1580), Expect = e-173,   Method: Composition-based stats.
 Identities = 346/651 (53%), Positives = 444/651 (68%), Gaps = 10/651 (1%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            + SD+YDASSI +LEGLEPVR RPGMYIGGTDE+ALHH+ +E++DN+MDE +AG+A  I
Sbjct: 6   TNPSDDYDASSIEVLEGLEPVRQRPGMYIGGTDERALHHMVAEILDNSMDEAVAGHATRI 65

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           EV L G+  +TV DNGRGIP++ HPKFP KS LE+IL TLHAGGKF    Y+ SGGLHGV
Sbjct: 66  EVELHGDYSVTVTDNGRGIPIDPHPKFPGKSALEVILCTLHAGGKFSGKAYQTSGGLHGV 125

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALSD L V VA+   +F Q+FSRG+PL P+EK     N+RGT +TF  D +IFG
Sbjct: 126 GSSVVNALSDSLVVQVAKNKELFEQRFSRGLPLGPVEKVGAAPNRRGTSVTFHADDQIFG 185

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F   RL  + +SKAYL   V+  W   K   +    P +  F+FPGGLK YL+  L
Sbjct: 186 S-HRFKPKRLFTLARSKAYLYSGVEIRW---KSAIDDGETPTEATFHFPGGLKDYLKEVL 241

Query: 278 ENRSLISSEIFTGKTE--KKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGL 334
              S  S   F GK E  +K    G VEWAI W    +  I SYCNT+ T EGGTH +G 
Sbjct: 242 GTASTYSDTGFAGKVEFREKFGEPGYVEWAINWTPARDGFIQSYCNTVPTPEGGTHVAGF 301

Query: 335 RVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
             A+ +GIK Y EL  NK+A  I  DDL+     ++S FI +P F GQTK +L +  A +
Sbjct: 302 WAAILKGIKAYGELVGNKKAAQINRDDLLTGGCALVSTFIADPAFVGQTKDRLSTEAAAK 361

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454
            VE A+RD FD++L  +   A  +L++++ R+EERLRRR+++E  RK+A +KLRLPGKL 
Sbjct: 362 MVEGAVRDHFDNWLAADTKSAGAILDFLVLRAEERLRRRQEKETQRKSATKKLRLPGKLV 421

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS     GTE+F+VEGDSAGGSAK  R+R  QA+LPLRGKILNV  A S K+  NQ+I 
Sbjct: 422 DCSATNREGTEIFLVEGDSAGGSAKMGRDRKTQALLPLRGKILNVLGAASSKLGQNQEIN 481

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           DL QALG     ++R +DLRY+KVIIMTDADVDGAHIA+LL+TFF+ +M  LI+  HL+L
Sbjct: 482 DLCQALGVGMGIKFRVDDLRYDKVIIMTDADVDGAHIAALLMTFFFSQMRPLIDHGHLYL 541

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL+R+TQG K +Y  D+  K   + +    GKGKI++ RFKGLGEM A  LKET MD
Sbjct: 542 ACPPLYRLTQGAKRLYVADDAEKDAWMAK-GLGGKGKIDVQRFKGLGEMDAKDLKETTMD 600

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            N R L+RV I++D     +T D + +LMG K + RF++IQE A F++++ 
Sbjct: 601 PNTRKLIRVTIDEDE--PGETGDLVERLMGKKPELRFQYIQENARFVEELD 649


>gi|209525244|ref|ZP_03273786.1| DNA gyrase, B subunit [Arthrospira maxima CS-328]
 gi|209494259|gb|EDZ94572.1| DNA gyrase, B subunit [Arthrospira maxima CS-328]
          Length = 645

 Score =  613 bits (1580), Expect = e-173,   Method: Composition-based stats.
 Identities = 248/651 (38%), Positives = 372/651 (57%), Gaps = 14/651 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y A  I++LEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AGY   IEV 
Sbjct: 2   TSTYSADQIQVLEGLEAVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALAGYCTHIEVE 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V D+GRGIP++ H K   +S LE ++T LHAGGKF    Y++SGGLHGVGIS
Sbjct: 62  INPDNSVRVTDDGRGIPIDTHSK-TGRSALETVMTVLHAGGKFGGGGYKVSGGLHGVGIS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ + VTV R +  + Q++ RG+P++ +++      + GT + F+PD KIF    
Sbjct: 121 VVNALSEWVEVTVLRDHKRYVQRYERGVPVTEVKEHSSKETQTGTSVCFKPDTKIFTTGI 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F+   +    +  AYL+  V+   + ++    K    + E + + GG+K Y+      +
Sbjct: 181 EFEYDTIASRLRELAYLNAGVRITLTDNRLELLKREEAKVESYCYEGGIKEYVTYMNREK 240

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
             +  +      E+    +  V         +  I  + N I T +GGTH  GL+  LTR
Sbjct: 241 QALHEDTIYVSGERNNV-QVEVALQWCVDAYSDTILGFANNIRTVDGGTHLEGLKTVLTR 299

Query: 341 GIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +   A      +    ++  +++     G++SV + +PEF GQTKTKL + + +  V++
Sbjct: 300 TMNAIARKRNKIKDNEPNLGGENVREGLTGVISVKVPDPEFEGQTKTKLGNTEVRGIVDS 359

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            + +    +L  NP  A  +LE  I+  +     R+ R+ V RK+ +    LPGKLADCS
Sbjct: 360 LVGEVLTEFLDFNPNVADAILEKAIQAFKAAEAARRARDLVRRKSVLESSPLPGKLADCS 419

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +E+F+VEGDSAGGSAKQ R+R  QA+LPLRGKILN+      KI  N +I  L+
Sbjct: 420 SRDPEESEIFLVEGDSAGGSAKQGRDRRTQAILPLRGKILNIEKTDDAKIYKNNEIQSLI 479

Query: 518 QALGCRTR-SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
            ALG   +  ++    LRY KVIIMTDADVDGAHI +LLLTFFY+   +L++Q  +++  
Sbjct: 480 TALGLGIKGEEFDPSQLRYHKVIIMTDADVDGAHIRTLLLTFFYRYQRELVDQGFIYIAC 539

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+++ +G    Y ++E+  Q+ L EF  +      I RFKGLGEM+ +QL +T M+  
Sbjct: 540 PPLYKVERGRNHYYCYNEQQLQQQLAEFPDNAN--YTIQRFKGLGEMMPNQLWDTTMNPE 597

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685
            R++ RVEI        +       LMG +   R +FI++ A  +D  D+ 
Sbjct: 598 TRSIKRVEIED----AAEADHIFTVLMGDRVAPRRQFIEDHAPRLDITDLD 644


>gi|29374666|ref|NP_813818.1| DNA gyrase subunit B [Enterococcus faecalis V583]
 gi|257418838|ref|ZP_05595832.1| DNA gyrase B gyrB [Enterococcus faecalis T11]
 gi|29342124|gb|AAO79890.1| DNA gyrase, B subunit [Enterococcus faecalis V583]
 gi|257160666|gb|EEU90626.1| DNA gyrase B gyrB [Enterococcus faecalis T11]
          Length = 642

 Score =  613 bits (1580), Expect = e-173,   Method: Composition-based stats.
 Identities = 252/653 (38%), Positives = 374/653 (57%), Gaps = 24/653 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  YDAS I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AG+A  I+V 
Sbjct: 5   AQEYDASQIQVLEGLEAVRKRPGMYIGSTSGEGLHHLVWEIVDNSIDEALAGFAKSIQVI 64

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TV+D+GRGIPV    K   +  +E + T LHAGGKF    Y++SGGLHGVG S
Sbjct: 65  IEPDDSITVIDDGRGIPVGIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 123

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  L V V +   ++ Q++ RG  +  L+  E+  ++ GT + F PDP+IF +  
Sbjct: 124 VVNALSTSLDVRVYKDGKVYYQEYRRGAVVDDLKVIEET-DRHGTTVHFIPDPEIFTETT 182

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +D  +L    +  A+L+  +       +E  E         +++ GG+K+Y++    N+
Sbjct: 183 VYDFDKLATRVRELAFLNRGLHISIEDRREGQEDKKE-----YHYEGGIKSYVEHLNANK 237

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
            +I  E    + E++     TVE ++ + +     I S+ N I T EGGTHESG + +LT
Sbjct: 238 DVIFPEPIFIEGEQQDI---TVEVSMQYTDGYHSNILSFANNIHTYEGGTHESGFKTSLT 294

Query: 340 RGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA   +  +     +  +D+      ++S+   +P+F GQTKTKL + + +   +
Sbjct: 295 RVINDYARKQKLMKENDEKLTGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSEVRTVTD 354

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
               + F  +L++NP    +++E  +  S+ RL  ++ RE   RK A+    LPGKLADC
Sbjct: 355 RLFSEYFTKFLMENPTVGKQIVEKGMLASKARLAAKRAREVTRRKGALEISNLPGKLADC 414

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S       ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  +KI  N++I  L
Sbjct: 415 SSKDPEKCELFIVEGDSAGGSAKQGRSREFQAILPIRGKILNVEKASMDKILANEEIRSL 474

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G      +     RY K++IMTDADVDGAHI +LLLT FY+ M  ++E  ++++  
Sbjct: 475 FTAMGTGFGEDFDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRFMRPIVEAGYVYIAQ 534

Query: 577 PPLFRITQGTKSVYAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           PPL+ + QG    Y       EE   K+LEE       K  + R+KGLGEM   QL ET 
Sbjct: 535 PPLYGVKQGKNITYVQPGKHAEEELAKVLEELPAS--PKPSVQRYKGLGEMDDHQLWETT 592

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           MD  KR + RV ++  +    +       LMG + + R  FI+E A ++ ++ 
Sbjct: 593 MDPEKRLMARVSVDDAI----EADQIFEMLMGDRVEPRRAFIEENAHYVKNLD 641


>gi|257867817|ref|ZP_05647470.1| topoisomerase IV B subunit [Enterococcus casseliflavus EC30]
 gi|257874144|ref|ZP_05653797.1| topoisomerase IV B subunit [Enterococcus casseliflavus EC10]
 gi|257801900|gb|EEV30803.1| topoisomerase IV B subunit [Enterococcus casseliflavus EC30]
 gi|257808308|gb|EEV37130.1| topoisomerase IV B subunit [Enterococcus casseliflavus EC10]
          Length = 677

 Score =  613 bits (1580), Expect = e-173,   Method: Composition-based stats.
 Identities = 245/655 (37%), Positives = 355/655 (54%), Gaps = 33/655 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
             +  Y+ +SI++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DE ++GY N I+
Sbjct: 5   KKTTEYNDASIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGNEID 64

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +  ++V DNGRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHGVG
Sbjct: 65  VTIHKDNSISVRDNGRGMPVGTH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 122

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
            SVVNALS  L V + R    + Q F   G P   L+K  K R   GT +TF+PD  IF 
Sbjct: 123 ASVVNALSSWLEVVIVRDGIEYKQSFKDGGKPAGTLKKIGKTRKPTGTTVTFKPDDTIFS 182

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F    L +  +  A+L   VK   + ++        P  E F +  G+K ++    
Sbjct: 183 A-TKFSYEILAERLRESAFLLKGVKISLTDER-----GEEPIHEVFLYEEGIKEFVDYLN 236

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRV 336
           E +  + +++      K+      VE A  + +   E   S+ N + T +GGTHE G++ 
Sbjct: 237 EEKDTL-TQVVYFSGTKEAI---EVELAFQYNDGYSENVLSFVNNVRTKDGGTHEVGMKT 292

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392
           ++T+   +YA       ++  ++   D       +LS+ + E   +F GQTK KL +  A
Sbjct: 293 SMTKAFNEYARKVNLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLA 352

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRL 449
           +  V+N + +   +YL +N   +  L+   I+  E R   RK RE +R    RK     L
Sbjct: 353 RNAVDNVIGEQLGYYLQENSEMSQMLVRKAIKAREAREAARKAREESRTGKKRKKGESLL 412

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
            GKL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I  
Sbjct: 413 SGKLTPAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILK 472

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N++I  ++  +G     ++  ED  Y+KVIIMTDAD DGAHI  LLLTFFY+ M  LIE 
Sbjct: 473 NEEINTMIYTIGAGVGPEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEA 532

Query: 570 KHLFLISPPLFRITQ--GTK--SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
             +++  PPL+++++  G K    YA  ++   K+ ++  K       + R+KGLGEM A
Sbjct: 533 GKVYIALPPLYKVSKGLGKKAVVEYAWTDDELSKLTQKIGK----GYMLQRYKGLGEMNA 588

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            QL ET MD   RTL+RV I+         +  +  LMG K + R K+I+    F
Sbjct: 589 DQLWETTMDPETRTLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIENHVQF 639


>gi|327404490|ref|YP_004345328.1| DNA gyrase subunit B [Fluviicola taffensis DSM 16823]
 gi|327319998|gb|AEA44490.1| DNA gyrase subunit B [Fluviicola taffensis DSM 16823]
          Length = 650

 Score =  613 bits (1580), Expect = e-173,   Method: Composition-based stats.
 Identities = 258/658 (39%), Positives = 378/658 (57%), Gaps = 21/658 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +  + +Y A +I++LEGLE VR RP MYIG    K LHHL  EV+DN++DE +AG+ 
Sbjct: 1   MSEEKKNQDYSADNIQVLEGLEAVRKRPAMYIGDIGIKGLHHLVYEVVDNSIDEALAGHC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I V ++ +  +TV DNGRGIP     K   KS LEI++T LHAGGKFD  TY++SGGL
Sbjct: 61  DTIGVWINEDNSITVKDNGRGIPTGI-TKKEGKSALEIVMTVLHAGGKFDKDTYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+S VNALS  LH  V R   IF Q++  G PL  + +     +K GT +TF+PD  
Sbjct: 120 HGVGVSCVNALSIHLHAVVHRDGKIFEQEYQIGKPLYEVREIGN-SDKHGTEVTFKPDGT 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   ++   L    +  A+L+  +    +  +E+ +    P    F+  GGL+ + Q
Sbjct: 179 IFEN-TEYNYDTLCARMRELAFLNKGITITMTDLRELDDNG-NPTSTIFHSEGGLREFAQ 236

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               NR  + +++   + E++G     VE A+ +       I +Y N I T EGGTH SG
Sbjct: 237 YLDRNREPLVADVIYFEGEREGIP---VEVALTYNTSYTENIQAYVNNINTHEGGTHLSG 293

Query: 334 LRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R  LT  +KKYA  +    +  I I  DD       ++SV ++EP+F GQTKTKL + +
Sbjct: 294 FRRGLTNTLKKYATDSGMLAREKIEIDGDDFREGLTAVVSVKVQEPQFEGQTKTKLGNRE 353

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLP 450
               V  A+ +    YL ++P EA  +++ VI         R+ +  V RK  +    LP
Sbjct: 354 VTAPVSQAVSEMLSIYLEEHPNEAKIIVDKVILAARARHAARKAREMVQRKNVMTGSGLP 413

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS+      E++ VEGDSAGG+AKQ R+R  QA++PLRGKILNV  A   KI  N
Sbjct: 414 GKLADCSEKDPSLCEIYFVEGDSAGGTAKQGRDRHFQAIMPLRGKILNVEKAMHHKIFEN 473

Query: 511 QQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           ++I ++  ALG R  ++        E LRY K+IIM DADVDG+HI +L+LTFF++ M +
Sbjct: 474 EEIKNMYTALGVRIGTEEDSKALNIEKLRYHKIIIMCDADVDGSHIETLILTFFFRFMKE 533

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEML 624
           LIE  ++++ +PPL+++ +G KS YA +E+ +  ++ + K  G    + + R+KGLGEM 
Sbjct: 534 LIELGYIYIATPPLYQVKKGAKSDYAWNEDQRDILINQLKGGGADSSVNVQRYKGLGEMN 593

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           A QL +T M+   RTL +V I              + LMG +   R +FI++ A +  
Sbjct: 594 AEQLWDTTMNPEYRTLRQVTIENAAEC----DQIFSMLMGDEVPPRREFIEKNAKYAK 647


>gi|325954875|ref|YP_004238535.1| DNA gyrase subunit beta [Weeksella virosa DSM 16922]
 gi|323437493|gb|ADX67957.1| DNA gyrase, B subunit [Weeksella virosa DSM 16922]
          Length = 671

 Score =  613 bits (1580), Expect = e-173,   Method: Composition-based stats.
 Identities = 257/656 (39%), Positives = 386/656 (58%), Gaps = 22/656 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           + + Y A +I+ +EG+E VR+RP MYIG    + LHHL  EV+DN++DE +AG+ + I V
Sbjct: 29  SQNTYTADNIQAIEGMEHVRLRPSMYIGDVGTRGLHHLVYEVVDNSIDEALAGFCDTISV 88

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            +     ++V DNGRGIPV+ H K   KS LE+++T + AGGKFD  TY++SGGLHGVG+
Sbjct: 89  KILEGNSISVSDNGRGIPVDIHKK-EGKSALEVVMTKIGAGGKFDKDTYKVSGGLHGVGV 147

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           S VNALS+ L   V +    + Q++ +G PL  +++     +K GT +TF PD  IF + 
Sbjct: 148 SCVNALSNHLTAEVFKNGKHYIQEYEKGKPLYDVKQVGDT-DKSGTTVTFTPDNTIFNE- 205

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             ++   L    +  +YL+  +    + ++   EK   P  E F+  GGLK +++    N
Sbjct: 206 LEYNFNTLANRLRELSYLNKGITITLTDERVKDEKG-EPLLEVFHSDGGLKEFVEFIDGN 264

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVAL 338
           R  I   +   + E+ G     VE A+ +     E    Y N I T EGGTH +G R AL
Sbjct: 265 REAIMDNVICMEGERDGIP---VEVAMRYNTSYNENLHSYVNNINTHEGGTHLAGFRRAL 321

Query: 339 TRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +KKYA+   N  K  + I+ DD       I+SV + EP+F GQTKTKL + +    V
Sbjct: 322 TRTLKKYADENFNLTKEKVEIVGDDFREGLTAIISVKVMEPQFEGQTKTKLGNSEVSGAV 381

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           +  + +   ++L +NPIEA  +++ VI      +  ++ +  V RK  +    LPGKLAD
Sbjct: 382 DKIVSEMLTNFLEENPIEAKIIVDKVILAAKARQAAKKAREMVQRKNPMGGSGLPGKLAD 441

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS      +E+F+VEGDSAGG+AKQ R+R  QA+LPLRGKILNV  A + K+ +N++I +
Sbjct: 442 CSSRNPEESEIFLVEGDSAGGTAKQGRDRHFQAILPLRGKILNVEKAMAHKVLDNEEIKN 501

Query: 516 LVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           +  ALG    ++          LRY KV+IMTDADVDG+HIA+L+LTFF++ M +LIE  
Sbjct: 502 IYTALGVSIGTEEDSKALNISKLRYHKVVIMTDADVDGSHIATLILTFFFRYMKELIENG 561

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           H+++ +PPL+ + +G K+ YA  EE ++ ++E+    GKG + I R+KGLGEM A QL +
Sbjct: 562 HIYIATPPLYLVKKGNKAEYAWGEEEREALVEKLAPDGKG-VTIQRYKGLGEMNAEQLWD 620

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           T ++   RT+ +V I     +  +     + LMG     R +FI++ A +   +  
Sbjct: 621 TTLNPQNRTMRKVTIE----NAAEADRVFSMLMGDDVQPRREFIEKNAEYAK-IDA 671


>gi|295689649|ref|YP_003593342.1| DNA topoisomerase IV subunit B [Caulobacter segnis ATCC 21756]
 gi|295431552|gb|ADG10724.1| DNA topoisomerase IV, B subunit [Caulobacter segnis ATCC 21756]
          Length = 755

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 373/688 (54%), Positives = 471/688 (68%), Gaps = 14/688 (2%)

Query: 4   DSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPG 63
            +  L S++ P+ + +   +            A  SA   Y A+ I +LEGLEPVR RPG
Sbjct: 75  PAAPLLSSVEPRVEATPRPIPPPPPSSKPAPAAKPSAPGEYSAADIEVLEGLEPVRKRPG 134

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIGGTDE+ALHHLF+EV+DN+MDE +AG+A  IEV LD +GFL+V D+GRG+PV+ HPK
Sbjct: 135 MYIGGTDERALHHLFAEVLDNSMDEAVAGFAKTIEVKLDADGFLSVKDDGRGMPVDPHPK 194

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
           +P KS LE+I+T LHAGGKF    YE SGGLHGVG SVVNALS+ + VTV R      Q 
Sbjct: 195 YPGKSALEVIMTVLHAGGKFTGKAYETSGGLHGVGASVVNALSERVEVTVWRDGFEHLQV 254

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           F+RG PL P+++    +  +GT + F+PD +IFG+   F  ARL +M +SKAYL   V+ 
Sbjct: 255 FARGKPLGPIQQVAPSKK-KGTMVRFKPDDEIFGEGTNFKPARLYRMARSKAYLFRGVQI 313

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
            WSCD         PE   F+FP GL  +L  + +  + I+ E F+G+ E++G   G VE
Sbjct: 314 KWSCDPSRIHDQTPPEA-TFHFPNGLADFLAERTKGLTTITPESFSGRIERQGEA-GAVE 371

Query: 304 WAIAWC-----EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII 358
           WA+ W      E +  + SYCNT+ T EGGTHESG R ALTRG+K YAEL   KR   I 
Sbjct: 372 WAVTWTPQGFGEHDGFMQSYCNTVPTPEGGTHESGFRAALTRGLKAYAELKGEKRGGIIT 431

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
           +DD++  A  ++SVFI+ PEF GQTK KL + +AQR VE ALRDPFD +L  +P  A  L
Sbjct: 432 ADDVVAQAGALISVFIKNPEFQGQTKEKLSTSEAQRFVEQALRDPFDLWLSSSPKNAQAL 491

Query: 419 LEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
           LE+VIER+EERL+RRK +EV+R +A RKLRLPGKLADC+ +   G ELFIVEGDSAGGSA
Sbjct: 492 LEFVIERAEERLKRRKDKEVSRASATRKLRLPGKLADCAGSAVDGAELFIVEGDSAGGSA 551

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538
           KQAR+R  QA+LPLRGKILNVASA  EK   N+++ DL+ ALG +  S+YREEDLRYE++
Sbjct: 552 KQARDRKYQAILPLRGKILNVASASGEKFTANKELSDLMLALGAQGGSKYREEDLRYERI 611

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQ 598
           IIMTDADVDGAHIASLL+TFFY+ M D+I Q HLFL  PPL+RI  G KS YA D+ HK 
Sbjct: 612 IIMTDADVDGAHIASLLITFFYRTMPDVIRQGHLFLALPPLYRIAHGGKSEYARDDAHKD 671

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           ++L    K    K EI RFKGLGEM+A+QLKET MD  KRTL RV + +   S    ++ 
Sbjct: 672 ELLATVFK--GKKPEIGRFKGLGEMMAAQLKETTMDPKKRTLARVTLPRHEES---VEEL 726

Query: 659 INKLMGTKADERFKFIQERASFID-DVG 685
           +  LMG K + RF+FIQE A F   D+ 
Sbjct: 727 VETLMGRKPELRFRFIQENAEFATADLD 754


>gi|315650187|ref|ZP_07903262.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Eubacterium
           saburreum DSM 3986]
 gi|315487544|gb|EFU77852.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Eubacterium
           saburreum DSM 3986]
          Length = 650

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 254/648 (39%), Positives = 372/648 (57%), Gaps = 20/648 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y AS I+ILEGLE VR+RPGMYIG    + LHHL  E++DN++DE +AG+   IEVS++
Sbjct: 17  EYGASQIQILEGLEAVRVRPGMYIGSISSRGLHHLVYEIVDNSVDEALAGFCTEIEVSIN 76

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV DNGRGIPV+   K      LE++ T LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 77  EDNSITVKDNGRGIPVDIQKKA-GIPALEVVFTILHAGGKFGGGGYKTSGGLHGVGASVV 135

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221
           NALS  L V V R   ++  +F +G  +  +E   +    K GT ++F PD  IF +   
Sbjct: 136 NALSTWLDVKVYRDGKVYHMRFEKGKVVEKIEVIGECDPQKTGTEVSFLPDAGIFEETV- 194

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +D   L    +  A+L+  +K     ++E   K        F++ GG+K ++    + + 
Sbjct: 195 YDFDILKIRLRETAFLTKALKITLIDNREEKRK------MSFHYEGGIKEFVTYLNKGKV 248

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I  ++   +  K+      VE A+   +     I ++ N I T EGGTH SG + ALT+
Sbjct: 249 PIYEDVIYCEGTKEKVM---VEVAMQHNDNYSESIYTFVNNINTPEGGTHLSGFKNALTK 305

Query: 341 GIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
              +YA   +  +    ++  +D+    V I+SV I +P+F GQTK KL + +AQ  V +
Sbjct: 306 TFNEYARSNKLLKDSDENLSGEDIREGLVAIISVKIEDPQFEGQTKQKLGNSEAQTAVNS 365

Query: 399 ALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
            + +   ++L QNP  A  +  + +  +      R+ +    RK+A+  + LPGKLADCS
Sbjct: 366 IVSEQLTYFLEQNPTVAKIISEKAITAQRARAAARKARDLTRRKSALDNMSLPGKLADCS 425

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                  E+FIVEGDSAGGSAK AR R  QA+LPLRGKILNV  A  +KI +N +I  ++
Sbjct: 426 SKNPKECEIFIVEGDSAGGSAKGARRRDTQAILPLRGKILNVEKARLDKIYSNAEIKGMI 485

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A G      +    LRY K+IIMTDADVDGAHI +L+LTF Y+ M +LI++ H++L  P
Sbjct: 486 TAFGTGIHDDFDITKLRYNKIIIMTDADVDGAHIDTLMLTFIYRFMPELIKEGHVYLAQP 545

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+++ +  K  YA+ +E    IL+E  +    K  I R+KGLGEM A QL ET MD  +
Sbjct: 546 PLYKLEKNKKVWYAYSDEELNNILKEVGRDQNNK--IQRYKGLGEMDAEQLWETTMDPER 603

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           R L +V +++ +  L +T    + LMG +   R +FI+  A ++ ++ 
Sbjct: 604 RVLKKVVLDESM--LSETDVVFSTLMGDQVAPRREFIEANAKYVSNLD 649


>gi|154248675|ref|YP_001419633.1| DNA topoisomerase IV subunit B [Xanthobacter autotrophicus Py2]
 gi|154162760|gb|ABS69976.1| DNA topoisomerase IV, B subunit [Xanthobacter autotrophicus Py2]
          Length = 678

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 397/684 (58%), Positives = 501/684 (73%), Gaps = 16/684 (2%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           M+  S DLF + P            +  +P   A        +Y A+ I +LEGLEPVR 
Sbjct: 1   MS-QSDDLFGSTPRPKPAGKPAKAAAAAVPAMDA--------DYTAAHIEVLEGLEPVRR 51

Query: 61  RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           RPGMYIGGTD KALHHLF+EVIDN MDE +AG+A  IEV +  +G+LTV DNGRGIPVE 
Sbjct: 52  RPGMYIGGTDSKALHHLFAEVIDNCMDEAVAGHATFIEVQMAADGYLTVSDNGRGIPVEE 111

Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
           HPKFP KS LE+I+TTLHAGGKFD+  YE SGGLHGVGISVVNALSD+L V V R  T++
Sbjct: 112 HPKFPGKSALEVIMTTLHAGGKFDSKVYETSGGLHGVGISVVNALSDDLEVEVTRNQTLY 171

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
            Q FS+G+P   L++  ++ N+RGTR+ F PDP+IFG  A F+ AR+ +M +SKAYL G 
Sbjct: 172 RQSFSKGVPQGKLKEVGRITNRRGTRVRFHPDPEIFGPSARFEPARVFRMARSKAYLFGG 231

Query: 241 VKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
           V+  WSCD E+ +   G+PEK  F FPGGL+ YL   LE ++L+ S+IF+G+ +K G H 
Sbjct: 232 VEIRWSCDPELLKGIEGVPEKTSFRFPGGLRDYLAADLEGQTLVHSDIFSGRIQKPGGH- 290

Query: 300 GTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISI 357
           G+VEWA+AW  + +  I+SYCNTI T +GGTHE+GLR  L +G+K +AE +   KR   I
Sbjct: 291 GSVEWAVAWVADADGSISSYCNTIPTPDGGTHENGLRAVLLKGLKDHAERSGQGKRGSVI 350

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      +LSVF+REPEF GQTK +L + +A R VE  LRDPFDH+L  NP++A++
Sbjct: 351 TGDDVTTGCAAMLSVFVREPEFQGQTKDRLATAEAARIVEQGLRDPFDHWLAANPVQASR 410

Query: 418 LLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           LLE VI+R+EERLRR++++EV+RKTA+RKLRLPGKLADCS   A G+E+FIVEGDSAGGS
Sbjct: 411 LLEHVIDRAEERLRRKQEKEVSRKTAVRKLRLPGKLADCSNTEAAGSEIFIVEGDSAGGS 470

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AKQAR+R  QAVLPLRGKILNVASA  +K+  NQQ+ DL QALGC   S YR+ DLRYEK
Sbjct: 471 AKQARDRKTQAVLPLRGKILNVASATRDKLAQNQQLADLGQALGCGMLSHYRDADLRYEK 530

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           VIIMTDADVDGAHIASLL+TFF+++M  LIE  HLFL  PPL+RITQG K++YA D+ HK
Sbjct: 531 VIIMTDADVDGAHIASLLVTFFFRQMPKLIEDGHLFLAVPPLYRITQGAKTLYARDDAHK 590

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           +K+L++ +  GKGK+E+ RFKGLGEM+ +QLKET MD   RTL RV I     +   T D
Sbjct: 591 EKLLKK-EFTGKGKVEVGRFKGLGEMMPAQLKETTMDPRTRTLQRVTIEDAEQAA--TTD 647

Query: 658 SINKLMGTKADERFKFIQERASFI 681
            + +LMG + + RF FI ERA+F 
Sbjct: 648 LVERLMGNRPEARFAFISERAAFA 671


>gi|150387859|ref|YP_001317908.1| DNA gyrase, B subunit [Alkaliphilus metalliredigens QYMF]
 gi|149947721|gb|ABR46249.1| DNA gyrase, B subunit [Alkaliphilus metalliredigens QYMF]
          Length = 635

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 255/652 (39%), Positives = 391/652 (59%), Gaps = 23/652 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           ++    Y A  I++LEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AGY ++I
Sbjct: 2   ENKIQEYGAEQIQVLEGLEAVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALAGYCDVI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V++  +  + VVDNGRGIP+E HP+   KSTLE ++T LHAGGKF    Y++SGGLHGV
Sbjct: 62  DVTIYQDNSIKVVDNGRGIPIETHPQ-TGKSTLETVMTVLHAGGKFGGGGYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           GISVVNALS+ + V V +   ++ Q++ RGIP++ +++  +      T ITF+ D +IF 
Sbjct: 121 GISVVNALSEYVEVEVRKDGKLYKQRYERGIPITDVQEVGETTETG-TTITFKADSEIFE 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   +    L    +  A+L+  +K      +E         +  F + GG++ ++    
Sbjct: 180 EIL-YVYTTLENRLREMAFLNKGIKITLRDLREE-----EVMESSFRYDGGIQEFVMHLN 233

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            NR  +  ++   + +K+G+    VE A+ +       I SY NTI T EGGTH SG + 
Sbjct: 234 RNREALIDKVIYFEKQKEGS---VVEVALQYTGAYTENIFSYANTINTHEGGTHLSGFKA 290

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
            LTR I +YA       ++ I+++ +D+      I+SV + +P+F GQTKTKL + + + 
Sbjct: 291 GLTRVINEYARKNGILKEKEINLLGEDIREGLTAIISVKMADPQFEGQTKTKLGNSEMKG 350

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            VE++     + +L +NP EA  ++E  +     R   +K RE   RK A+    LPGKL
Sbjct: 351 IVESSTSQYLEAFLEENPHEAKIIIEKSLRAQRAREAAKKARELTRRKGALENTALPGKL 410

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC++     +E++IVEG+SAGGSAKQ R+R+ QA+LPLRGKILNV  +  ++I  + +I
Sbjct: 411 ADCAEKDPALSEIYIVEGNSAGGSAKQGRDRATQAILPLRGKILNVEKSRLDRILGSAEI 470

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            +++ A G     ++  E +RY K++IMTDADVDGAHI +LLLTFF++ M  LIE  +++
Sbjct: 471 RNMITAFGTGIGIEFDIEKVRYHKIVIMTDADVDGAHIRTLLLTFFFRYMKPLIELGYVY 530

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           +  PPL+++ +G    YA+ +E  QKI+ +      G  +I R+KGLGEM   QL +T M
Sbjct: 531 IAQPPLYKLKKGKVENYAYSDEEMQKIIVQMG----GSADIQRYKGLGEMNPEQLWDTTM 586

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +   RT L+V I           D  N LMG K + R +FI++ + ++ ++ 
Sbjct: 587 NPETRTFLQVSIED----AAGADDIFNTLMGDKVEPRRQFIEQNSKYVTNLD 634


>gi|288925541|ref|ZP_06419474.1| DNA gyrase, B subunit [Prevotella buccae D17]
 gi|315606674|ref|ZP_07881685.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella buccae
           ATCC 33574]
 gi|288337757|gb|EFC76110.1| DNA gyrase, B subunit [Prevotella buccae D17]
 gi|315251684|gb|EFU31662.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella buccae
           ATCC 33574]
          Length = 656

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 255/668 (38%), Positives = 394/668 (58%), Gaps = 29/668 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
             N +  +NY AS+I++LEGLE VR RP MYIG   EK LHHL +E +DN++DE +AGY 
Sbjct: 2   AENLNTENNYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLVNETVDNSIDEAMAGYC 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             IEV+++ +  +TV D+GRGIPV+ H K    S LE+++T LHAGGKFD  +Y++SGGL
Sbjct: 62  KNIEVTINEDNSITVQDDGRGIPVDEHKKLHK-SALEVVMTVLHAGGKFDKGSYKVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+S VNALS  +   V R   I+ Q++ +G PL P++   +  +++GTR  F PDP 
Sbjct: 121 HGVGVSCVNALSSHMLSQVFRDGKIYQQEYEKGKPLYPVKVVGET-DRQGTRQQFWPDPT 179

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           +F     +    +    +  A+L+  ++      +   ++ G   +E F+   GLK +++
Sbjct: 180 VFTTTV-YKWDIIASRMRELAFLNAGIRITLRDLR--PDEEGKTREEVFHAEQGLKEFVR 236

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               +R+ +  ++   KTEK+G     +E AI +  +    I SY N I T EGGTH +G
Sbjct: 237 YVDRHRTHLFDDVIYLKTEKQGVP---IEVAIMYNTDYSENIHSYVNNINTIEGGTHLTG 293

Query: 334 LRVALTRGIKKYAEL------TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
            R ALTR +K YA+          K  I I  +D       ++S+ + EP+F GQTKTKL
Sbjct: 294 FRAALTRVLKAYADNDAQISKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKL 353

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRK 446
            + +    V+ A+ +  ++YL ++P+EA K+ E V+  +  R+  RK RE  ++ + +  
Sbjct: 354 GNSEVAGAVQQAVGEALNNYLEEHPVEAKKICEKVVLAATARIAARKARESVQRKSVMSG 413

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADCS       E+F+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV      +
Sbjct: 414 GGLPGKLADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQWHR 473

Query: 507 IRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           +   + +M+++Q++G R         +   + LRY+K+IIMTDADVDG+HI +L++T FY
Sbjct: 474 VFEAESVMNIIQSIGVRFGVEGEDDREANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFY 533

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF--KKHGKGKIEISRFK 618
           + M  +IE+ HL++ +PPL++ T    S Y + E+ +Q  ++++   +     +   R+K
Sbjct: 534 RFMPKVIEEGHLYIATPPLYKCTYKKASEYCYTEQQRQAFIDKYVEGREDDKALHTQRYK 593

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           GLGEM   QL ET MD   R L +V I     +  +  +  + LMG   + R +FI++ A
Sbjct: 594 GLGEMNPEQLWETTMDPATRLLKQVNI----QNAAEADEIFSMLMGDDVEPRREFIEKNA 649

Query: 679 SFIDDVGT 686
           ++  ++  
Sbjct: 650 TYA-NIDA 656


>gi|225016753|ref|ZP_03705945.1| hypothetical protein CLOSTMETH_00665 [Clostridium methylpentosum
           DSM 5476]
 gi|224950421|gb|EEG31630.1| hypothetical protein CLOSTMETH_00665 [Clostridium methylpentosum
           DSM 5476]
          Length = 642

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 243/655 (37%), Positives = 371/655 (56%), Gaps = 22/655 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +  + NYD + I++LEGLE VR RPGMYIG T  K LHHL  E++DNA+DE +AG+   I
Sbjct: 2   EKLNQNYDENQIQVLEGLEAVRKRPGMYIGSTGPKGLHHLVYEIVDNAIDEALAGFCTQI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V +     + VVDNGRGIP   H K    S   ++ T LHAGGKF    Y+++GGLHGV
Sbjct: 62  DVEILPGNIIHVVDNGRGIPTGIHQK-EGISAATVVYTILHAGGKFGGGGYKVAGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS+ L + V     I  Q+F RG     +E   K  ++ GT + F+ DP+IF 
Sbjct: 121 GASVVNALSEWLELKVYDGENIHYQRFERGHYDKQMEVIGKT-DRTGTEVAFKADPEIFS 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   +D   LL   + +A+L+  VK   +  +        P  E  ++ GG+ ++++   
Sbjct: 180 ET-EYDYDTLLTRLREQAFLNAGVKIVMADRR-----QPEPVVENLHYEGGIISFVEFIH 233

Query: 278 ENR--SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
           + +    +  ++   K ++  +     E A+ + +     I S+ N I T EGGTHE G 
Sbjct: 234 KRKSLETLHPDVIYLKAQEGDS---VAEVALQYNDSYNELILSFANNIHTAEGGTHEIGF 290

Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           + ALTR    Y       +    ++  DD+      I+SV + E EF GQTK+KL +++ 
Sbjct: 291 KNALTRVFNDYGRKNNLLKEADKNLSGDDVREGLTAIISVKLTECEFEGQTKSKLGNIEV 350

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
           +  V+  + +   ++  +NP  A  + +  +     R   RK RE   RK+A+    LPG
Sbjct: 351 RALVDRMVSEKLTNFFEENPSVARSIFDKALNAQRAREAARKARELTRRKSALETASLPG 410

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS+     TEL+IVEGDSAGGSAK  R R  QA+LPL GK+LNV  A  +++  N 
Sbjct: 411 KLADCSERDPALTELYIVEGDSAGGSAKSGRERKYQAILPLWGKMLNVEKARLDRVYGND 470

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++M +V ALG      +    LRY K++IM DADVDG+HI +LLLTFF++ M  LI+Q H
Sbjct: 471 KLMPVVTALGTSIGDDFDITKLRYNKIVIMADADVDGSHIRTLLLTFFFRFMRPLIDQGH 530

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKK-HGKGKIEISRFKGLGEMLASQLKE 630
           +++  PPL+++++G +  YA+ ++ + + L E +  +   K++I R+KGLGEM   QL E
Sbjct: 531 VYIAQPPLYKLSRGKQHRYAYSDKERNQYLSELRDGNPDAKVDIQRYKGLGEMDPEQLWE 590

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T M+   R +++VE+   +       +    LMG K   R +FI++ A ++ ++ 
Sbjct: 591 TTMNPENRVMIKVEMEDAV----AADEVFTILMGDKVGPRREFIEKNAQYVQNLD 641


>gi|78780112|ref|YP_398224.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9312]
 gi|78713611|gb|ABB50788.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9312]
          Length = 655

 Score =  612 bits (1578), Expect = e-173,   Method: Composition-based stats.
 Identities = 259/657 (39%), Positives = 378/657 (57%), Gaps = 15/657 (2%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           S    +   S+ Y A  I++LEGLEPVR RPGMYIG T  + LHHL  EV+DN++DE +A
Sbjct: 2   SEDKRSNKISNEYGAEQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+ + IE+ L  +G   + DNGRGIP + HP+   KS LE +LT LHAGGKF +  Y++S
Sbjct: 62  GHCDHIEIVLQSDGSALISDNGRGIPTDIHPR-TGKSALETVLTVLHAGGKFGSGGYKVS 120

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS--PLEKKEKVRNKRGTRITF 209
           GGLHGVGISVVNALS+ ++VTV R  + F+Q+F +G+  +    +K+ K   K+GT I F
Sbjct: 121 GGLHGVGISVVNALSEWVNVTVYRDGSEFNQRFEKGVSQNVLQSKKQTKKPFKKGTTICF 180

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +PD  IF     F+ A L    +  AYL+G VK  +  ++         E E + + GG+
Sbjct: 181 KPDKTIFSGGIEFEYALLSSRLRELAYLNGGVKIVFRDERNKLSDGSFKE-EIYLYQGGI 239

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGT 329
           K Y+Q     +  I  +I    ++K+  +             +  I  + N I T +GGT
Sbjct: 240 KEYVQYMNAEKEAIHPDIIYVDSQKENVY-VEAALQWCSDVYSDNILGFANNIRTIDGGT 298

Query: 330 HESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  GL+  LTR     A+    ++ I  ++  +++      +LSV + +PEF GQTKTKL
Sbjct: 299 HIEGLKTVLTRTFNNLAKKRGKRKDIEKNLAGENIREGLTVVLSVKVPDPEFEGQTKTKL 358

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
            + + +  V++ + +    ++  NP     +LE  I+        R+ RE V RK+ +  
Sbjct: 359 GNTEVRGIVDSLIGEALTKFMEFNPGILDLVLEKAIQSFNAAEAARRARELVRRKSVLES 418

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILN+      K
Sbjct: 419 STLPGKLADCSSRDPAESEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNIEKTDDTK 478

Query: 507 IRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           I  N +I  L+ ALG   + +  +   LRY +V+IMTDADVDGAHI +LLLTFFY+   +
Sbjct: 479 IYKNTEIQSLITALGLGIKGEEFDVSSLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRE 538

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           L+E+ ++++  PPL+++ +G    Y ++E   +  +  F ++      I RFKGLGEM+ 
Sbjct: 539 LVEKGYIYIACPPLYKVERGKNHKYCYNENQLKDTIGSFGENAN--YNIQRFKGLGEMMP 596

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            QL +T M+   R + RVEI   L    +     N LMG K   R +FI+  +S +D
Sbjct: 597 KQLWDTTMNPQTRMMKRVEIEDAL----EADRIFNILMGDKVAPRREFIETHSSKLD 649


>gi|150014898|ref|YP_001307152.1| DNA gyrase subunit B [Clostridium beijerinckii NCIMB 8052]
 gi|149901363|gb|ABR32196.1| DNA gyrase, B subunit [Clostridium beijerinckii NCIMB 8052]
          Length = 635

 Score =  612 bits (1578), Expect = e-173,   Method: Composition-based stats.
 Identities = 262/645 (40%), Positives = 381/645 (59%), Gaps = 21/645 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YD + I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AGY N IEV ++ 
Sbjct: 8   YDENQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNSIDEALAGYCNKIEVYINE 67

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +  +TV D+GRG+PV  HPK   KST+E+I+T LHAGGKF    Y++SGGLHGVG SVVN
Sbjct: 68  DNSITVNDDGRGMPVGIHPKM-GKSTVEVIMTILHAGGKFGGGGYKVSGGLHGVGASVVN 126

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS+E  VTV R   I+ QK+S+G  L+ L K     ++ GT+  F+PD +IF +   FD
Sbjct: 127 ALSEECTVTVNRDGHIWQQKYSKGKVLNELTKVGD-SDQTGTQTYFKPDAEIFDEIV-FD 184

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L +  +  A+L+  +       ++  E       E F++ GG+K+++     N+  +
Sbjct: 185 FEILSQRLRELAFLNKGIYIRLVDKRDEKE-------EVFHYEGGIKSFVSYLNRNKVPL 237

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
             E    +  K      +VE A+ + +     I S+ N I T EGGTH  G + ALTR  
Sbjct: 238 HEEPIYIEGVKDNI---SVEVALQYNDGYTENIFSFANNIDTVEGGTHLVGFKTALTRVF 294

Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             YA+      +   +   DD+     G++S+ I EP+F GQTKTKL + + +  V++ +
Sbjct: 295 NDYAKKFGHIKENDKNFTGDDIREGLTGVISIKIEEPQFEGQTKTKLGNSEVRGIVDSIV 354

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
            +    +L +NP     +++  +  +  R   RK RE+ RK+ + +  LPGKLADCS   
Sbjct: 355 GENIGIFLEENPNIGKMIVDKALMAARARDAARKARELTRKSVLERSTLPGKLADCSSKD 414

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
               E++IVEGDSAGGSAKQ RNR  QA+LPLRGKILNV     ++I N   I  ++ A 
Sbjct: 415 PRECEIYIVEGDSAGGSAKQGRNRKFQAILPLRGKILNVEKQRLDRILNADTIRSMITAF 474

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           G    + +  E +RY ++IIMTDADVDGAHI +LLLTFFY+ M +LI+  H+++  PPL+
Sbjct: 475 GAGIGNDFDVEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMRNLIDDGHVYIAQPPLY 534

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           ++++  K  YA+ +   + +L E         +I R+KGLGEM ASQL +T MD  KR L
Sbjct: 535 KVSKSKKEYYAYSDPELESVLSELGGKDNST-DIQRYKGLGEMNASQLWDTTMDPEKRIL 593

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           L+V I   +       +    LMG K + R +FIQ+ A  + ++ 
Sbjct: 594 LKVNIEDAM----AADEIFTILMGEKVEPRKEFIQQNARNVVNLD 634


>gi|284051687|ref|ZP_06381897.1| DNA gyrase subunit B [Arthrospira platensis str. Paraca]
 gi|291569892|dbj|BAI92164.1| DNA gyrase B subunit [Arthrospira platensis NIES-39]
          Length = 645

 Score =  612 bits (1578), Expect = e-173,   Method: Composition-based stats.
 Identities = 250/651 (38%), Positives = 372/651 (57%), Gaps = 14/651 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y A  I++LEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AGY   IEV 
Sbjct: 2   TSTYSADQIQVLEGLEAVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALAGYCTHIEVD 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  + V D+GRGIP++ H K   +S LE ++T LHAGGKF    Y++SGGLHGVGIS
Sbjct: 62  INPDNSVRVTDDGRGIPIDTHSK-TGRSALETVMTVLHAGGKFGGGGYKVSGGLHGVGIS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ + VTV R +  + Q++ RG+P++ LE+     ++ GT + F+PD KIF    
Sbjct: 121 VVNALSEWVEVTVLRDHKRYVQRYERGVPVTELEEHSSKESQTGTSVCFKPDTKIFTTGI 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F+   +    +  AYL+  V+   + ++    K    + E + + GG+K Y+      +
Sbjct: 181 EFEYDTIASRLRELAYLNAGVRITLTDNRLELLKREEAKVESYCYEGGIKEYVTYMNREK 240

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
             +  +      E+    +  V         +  I  + N I T +GGTH  GL+  LTR
Sbjct: 241 QALHEDTIYVSGERNNV-QVEVALQWCVDAYSDTILGFANNIRTVDGGTHLEGLKTVLTR 299

Query: 341 GIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +   A      +    ++  +++     G++SV + +PEF GQTKTKL + + +  V++
Sbjct: 300 TMNAIARKRNKIKDNEPNLGGENVREGLTGVISVKVPDPEFEGQTKTKLGNTEVRGIVDS 359

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            + +    +L  NP  A  +LE  I+  +     R+ R+ V RK+ +    LPGKLADCS
Sbjct: 360 LVGEVLTEFLDFNPNVADAILEKAIQAFKAAEAARRARDLVRRKSVLESSPLPGKLADCS 419

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +E+F+VEGDSAGGSAKQ R+R  QA+LPLRGKILN+      KI  N +I  L+
Sbjct: 420 SRDPEESEIFLVEGDSAGGSAKQGRDRRTQAILPLRGKILNIEKTDDAKIYKNNEIQSLI 479

Query: 518 QALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
            ALG   + +  +   LRY KVIIMTDADVDGAHI +LLLTFFY+   +L+ Q  +++  
Sbjct: 480 TALGLGIKGEEFDSSQLRYHKVIIMTDADVDGAHIRTLLLTFFYRYQRELVAQGFIYIAC 539

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+++ +G    Y ++E+  Q+ L EF  +      I RFKGLGEM+ +QL +T M+  
Sbjct: 540 PPLYKVERGRNHYYCYNEQQLQQQLAEFPDNAN--YTIQRFKGLGEMMPNQLWDTTMNPE 597

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685
            R++ RVEI        +       LMG +   R +FI++ A  +D  D+ 
Sbjct: 598 TRSIKRVEIED----AAEADHIFTVLMGDRVAPRRQFIEDHAPRLDITDLD 644


>gi|325972866|ref|YP_004249057.1| DNA gyrase subunit beta [Spirochaeta sp. Buddy]
 gi|324028104|gb|ADY14863.1| DNA gyrase, B subunit [Spirochaeta sp. Buddy]
          Length = 677

 Score =  612 bits (1578), Expect = e-173,   Method: Composition-based stats.
 Identities = 251/670 (37%), Positives = 369/670 (55%), Gaps = 38/670 (5%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +SAS +Y A SI++L+GLE VR RPGMYIG T  + LHHL  EV+DN++DE +AGY + I
Sbjct: 23  ESASHSYSAGSIQVLKGLEAVRKRPGMYIGSTGIEGLHHLVYEVVDNSIDEAMAGYCSDI 82

Query: 98  EVSLDGNGF----LTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           +V LD +       TV DNGRGIPVE HP    KS+LEI LT LHAGGKFD ++Y++SGG
Sbjct: 83  QVFLDLDSEGREICTVEDNGRGIPVELHP-TEKKSSLEIALTQLHAGGKFDKNSYKVSGG 141

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+S VNALS  + VTV R   ++ Q++S GIP + + +     ++ GT ++F PD 
Sbjct: 142 LHGVGVSCVNALSIWMEVTVYRDGGVYRQQYSCGIPQTEVVRIGDT-DRSGTVVSFAPDY 200

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            I      F+   L+   +  ++L+  V    +  +           + F   GG+  ++
Sbjct: 201 SIMEQN-AFNYEVLVSRFRELSFLNKGVSITITDRR-----GDETHSQAFQSEGGISQFV 254

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
               E + ++     + + EK       VE A+ + ++   ++ SY N I T EGGTH +
Sbjct: 255 SYLNEFKRVLVDPPISIEGEKDSI---KVEIALQYNDKYDEKVLSYVNNINTREGGTHLT 311

Query: 333 GLRVALTRGIKKYAELT---QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           G R  L+R I    +       K    +   D+      ++SV + EP+F GQTK KL +
Sbjct: 312 GFRTGLSRVINTQLQKNTKLLKKYEEKLEQSDISEGLTAVVSVKVPEPQFEGQTKMKLGN 371

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
                 V + + +   +Y  + P +   +LE +I  +  R+  RK RE  RK +     L
Sbjct: 372 SAVTGVVFSLVYEKLGNYFDEFPAQTEVILEKIINAALGRIAARKAREQIRKKS-EGGGL 430

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADCS+      E+FIVEGDSAGGSAKQ R+R  QA+L L GK+LNV  A   K+  
Sbjct: 431 PGKLADCSEKDPAKCEVFIVEGDSAGGSAKQGRDRKFQAILALWGKMLNVEKAQEYKVLG 490

Query: 510 NQQIMDLVQALGCRTRSQYRE--------------EDLRYEKVIIMTDADVDGAHIASLL 555
           N ++  ++  +G                         +RY KVIIM DADVDG+HI +LL
Sbjct: 491 NDKLQPVIATIGAGLTRYNNMGKDEDFDHDVNFDVSKVRYHKVIIMADADVDGSHIRTLL 550

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615
           LTFF++ M  LIE  +++   PPL++IT G K  YA+DEE + +IL+E       K+ I 
Sbjct: 551 LTFFFRYMRPLIEAGYVYFAMPPLYKITIGKKVQYAYDEEARVRILQENNIADPSKVAIQ 610

Query: 616 RFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675
           R+KGLGEM   QL ET M+   R + ++++    +  ++     + LMG + + R  FI 
Sbjct: 611 RYKGLGEMNPEQLWETTMNPETRLISQIKL----HDAEEADRVFSMLMGEEVEPRRAFID 666

Query: 676 ERASFIDDVG 685
             A ++ ++ 
Sbjct: 667 ANAVYVSNLD 676


>gi|163786113|ref|ZP_02180561.1| DNA gyrase subunit B [Flavobacteriales bacterium ALC-1]
 gi|159877973|gb|EDP72029.1| DNA gyrase subunit B [Flavobacteriales bacterium ALC-1]
          Length = 649

 Score =  612 bits (1577), Expect = e-173,   Method: Composition-based stats.
 Identities = 246/655 (37%), Positives = 383/655 (58%), Gaps = 24/655 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
              Y A SI+ LEG+E VRMRP MYIG    + LHHL  EV+DN++DE +AG+ + I V+
Sbjct: 10  EHGYSADSIQALEGMEHVRMRPSMYIGDVGTRGLHHLVYEVVDNSIDEALAGHCDNITVT 69

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +T  D+GRGIPV  H K    S LE+++T + AGGKFD  +Y++SGGLHGVG+S
Sbjct: 70  INEDNSITTEDDGRGIPVGLHKK-EGVSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVS 128

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
            VNALS+ L  TV R+  ++ Q++ RG  + P++      +KRGT +TF+PD  IF    
Sbjct: 129 CVNALSEHLKATVFREGKVYEQEYERGKAMYPVKTTGDT-DKRGTTVTFKPDSTIFTQTL 187

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            ++   L    +  AYL+  +       +   E     E E F+   GLK +++     R
Sbjct: 188 EYNYDTLASRLRELAYLNKGITVHLIDKRHTKEDG-SFEGETFHSKEGLKEFIKFLDATR 246

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
             +  ++   + EK G     VE A+ +       + SY N I T EGGTH SG R  LT
Sbjct: 247 DPLMKDVIAFEGEKNGVP---VEVAMIYNTSYAENLHSYVNNINTHEGGTHLSGFRRGLT 303

Query: 340 RGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
             +KK+A+ +    K    +  DD       I+SV ++EP+F GQTKTKL + +   +V 
Sbjct: 304 HTLKKFADSSGMLDKLKFDVAGDDFREGLTAIISVKVQEPQFEGQTKTKLGNREVSASVS 363

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADC 456
            A+ +    YL ++P +A  +++ VI  ++ R   +K RE+  RKT +    LPGKL+DC
Sbjct: 364 QAVSEMLTDYLEEHPDDAKTIVQKVILAAQARHAAQKAREMVQRKTVMSIGGLPGKLSDC 423

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S+      E+++VEGDSAGG+AK  R+R+ QA+LPLRGKILNV  A + K+  N++I ++
Sbjct: 424 SEQNPEICEIYLVEGDSAGGTAKMGRDRAFQAILPLRGKILNVEKAMTHKVFENEEIKNI 483

Query: 517 VQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
             ALG    ++   +      LRY K++IM DAD+DG+HI +L+LTFF++ M +LIE  H
Sbjct: 484 FTALGVTIGTEEDSKALNLSKLRYHKIVIMCDADIDGSHIETLILTFFFRYMKELIENGH 543

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++ +PPL+ + +G K  YA +++ +  +++++    K    I R+KGLGEM A QL +T
Sbjct: 544 IYIATPPLYLVKKGAKKAYAWNDDERMALMDQYGDGAK----IQRYKGLGEMNAIQLWDT 599

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
            M+   RTL +++I+  +    +     + LMG +   R +FI++ A +  ++  
Sbjct: 600 TMNPEFRTLRQIQIDNGV----EADRVFSMLMGDEVPPRREFIEKNAVYA-NIDA 649


>gi|281424989|ref|ZP_06255902.1| DNA gyrase, B subunit [Prevotella oris F0302]
 gi|299142183|ref|ZP_07035316.1| DNA gyrase, B subunit [Prevotella oris C735]
 gi|281400833|gb|EFB31664.1| DNA gyrase, B subunit [Prevotella oris F0302]
 gi|298576272|gb|EFI48145.1| DNA gyrase, B subunit [Prevotella oris C735]
          Length = 656

 Score =  612 bits (1577), Expect = e-173,   Method: Composition-based stats.
 Identities = 262/668 (39%), Positives = 392/668 (58%), Gaps = 29/668 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
             NQ++  NY AS+I++LEGLE VR RP MYIG   EK LHHL +E +DN++DE +AGY 
Sbjct: 2   AENQNSEANYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLINETVDNSIDEAMAGYC 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             +E++L+ +G +TV DNGRGIPV+ H K    S LE+++T LHAGGKFD  +Y++SGGL
Sbjct: 62  TDVEITLNEDGSVTVEDNGRGIPVDEHKKLHK-SALEVVMTVLHAGGKFDKGSYKVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+S VNALS  +   V R   I+ Q++ +G PL P++   +    RGTR  F PDP 
Sbjct: 121 HGVGVSCVNALSSHMLSQVFRDGKIYQQEYEKGKPLYPVKVVGETTK-RGTRQQFWPDPT 179

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           +F     +    +    +  AYL+  ++   +  +   E  G   +E F+   GLK +++
Sbjct: 180 VFTT-TTYKWDIVASRMRELAYLNAGIRITLTDLRPNEE--GKTRQEVFHAKDGLKEFVR 236

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               +R+ +  ++   KTEK+G     +E AI +  +    I SY N I T EGGTH +G
Sbjct: 237 YVDRHRTHLFDDVIYLKTEKQGIP---IEVAIMYNTDYSENIHSYVNNINTIEGGTHLTG 293

Query: 334 LRVALTRGIKKYAE------LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
            R ALTR +K YA+          K  I I  +D       ++S+ + EP+F GQTKTKL
Sbjct: 294 FRAALTRTLKAYADAEPTIAKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKL 353

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRK 446
            + +    V+ A+ +   +YL ++PIEA K+ E V+  +  R+  RK RE  ++ + +  
Sbjct: 354 GNSEVSGAVQQAVGEALSNYLEEHPIEAKKICEKVVLAATARIAARKARESVQRKSVMTG 413

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADCS       E+F+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV      +
Sbjct: 414 GGLPGKLADCSNKDPKECEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQWHR 473

Query: 507 IRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           +   + +M+++Q++G R         +   + LRY+K+IIMTDADVDG+HI +L++T FY
Sbjct: 474 VFEAESVMNIIQSIGVRFGVEGEDDREANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFY 533

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF--KKHGKGKIEISRFK 618
           + M  +IE  HL++ +PPL++ T    S Y + E+ +Q  ++++   K     +   R+K
Sbjct: 534 RFMPKVIEDGHLYIATPPLYKCTYKKASEYCYTEQQRQAFIDKYVEGKEDDKSLHTQRYK 593

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           GLGEM   QL ET MD   R L +V I     +  +  +  + LMG   + R +FI++ A
Sbjct: 594 GLGEMNPEQLWETTMDPKSRLLKQVTI----QNAAEADEIFSMLMGDDVEPRREFIEQNA 649

Query: 679 SFIDDVGT 686
           ++  ++  
Sbjct: 650 TYA-NIDA 656


>gi|325570905|ref|ZP_08146554.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Enterococcus
           casseliflavus ATCC 12755]
 gi|325156309|gb|EGC68492.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Enterococcus
           casseliflavus ATCC 12755]
          Length = 677

 Score =  612 bits (1577), Expect = e-173,   Method: Composition-based stats.
 Identities = 245/655 (37%), Positives = 355/655 (54%), Gaps = 33/655 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
             +  Y+ +SI++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DE ++GY N I+
Sbjct: 5   KKTTEYNDASIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGNEID 64

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +  ++V DNGRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHGVG
Sbjct: 65  VTIHKDNSISVRDNGRGMPVGTH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 122

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
            SVVNALS  L V + R    + Q F   G P   L+K  K R   GT +TF+PD  IF 
Sbjct: 123 ASVVNALSSWLEVVIVRDGIEYKQSFKDGGKPAGTLKKIGKTRKPTGTTVTFKPDDTIFS 182

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F    L +  +  A+L   VK   + ++        P  E F +  G+K ++    
Sbjct: 183 T-TKFSYEILAERLRESAFLLKGVKISLTDER-----GEEPIHEVFLYEEGIKEFVDYLN 236

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRV 336
           E +  + +++      K+      VE A  + +   E   S+ N + T +GGTHE G++ 
Sbjct: 237 EEKDTL-TQVVYFSGTKEAI---EVELAFQYNDGYSENVLSFVNNVRTKDGGTHEVGMKT 292

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392
           ++T+   +YA       ++  ++   D       +LS+ + E   +F GQTK KL +  A
Sbjct: 293 SMTKAFNEYARKVNLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLA 352

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRL 449
           +  V+N + +   +YL +N   +  L+   I+  E R   RK RE +R    RK     L
Sbjct: 353 RNAVDNVIGEQLGYYLQENSEMSQMLVRKAIKAREAREAARKAREESRTGKKRKKGESLL 412

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
            GKL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I  
Sbjct: 413 SGKLTPAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILK 472

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N++I  ++  +G     ++  ED  Y+KVIIMTDAD DGAHI  LLLTFFY+ M  LIE 
Sbjct: 473 NEEINTMIYTIGAGVGPEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEA 532

Query: 570 KHLFLISPPLFRITQ--GTK--SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
             +++  PPL+++++  G K    YA  ++   K+ ++  K       + R+KGLGEM A
Sbjct: 533 GKVYIALPPLYKVSKGLGKKAVVEYAWTDDELSKLTQKIGK----GYMLQRYKGLGEMNA 588

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            QL ET MD   RTL+RV I+         +  +  LMG K + R K+I+    F
Sbjct: 589 DQLWETTMDPETRTLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIESHVQF 639


>gi|257127028|ref|YP_003165142.1| DNA gyrase subunit beta [Leptotrichia buccalis C-1013-b]
 gi|257050967|gb|ACV40151.1| DNA gyrase, B subunit [Leptotrichia buccalis C-1013-b]
          Length = 660

 Score =  612 bits (1577), Expect = e-173,   Method: Composition-based stats.
 Identities = 263/669 (39%), Positives = 374/669 (55%), Gaps = 37/669 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY A +I +LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AG  + I V +
Sbjct: 3   NNYGAEAITVLEGLEAVRKRPGMYIGSTSSRGLHHLVWEIVDNSVDEALAGICDKITVKI 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
                + V DNGRGIPV  H     KSTLE++LT LHAGGKFDN  Y++SGGLHGVG+SV
Sbjct: 63  LEGNIIEVSDNGRGIPVGMHK--TGKSTLEVVLTVLHAGGKFDNDNYKVSGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPDPKIFGDKA 220
           VNALS+ L  TV R   IF Q + RG+P SP+E+     +   GT + F+ D +IF    
Sbjct: 121 VNALSEWLEATVTRDGKIFRQTYERGVPTSPVEEIGVADDSAHGTVVRFKADDEIFETTV 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +D + L    +  AYL+  +K   + ++         + EEF F GG+K +L   ++  
Sbjct: 181 -YDYSVLESRLKELAYLNKGLKIELADER----NAENVKAEEFLFEGGIKDFLNEIIDEE 235

Query: 281 -----------SLISSEIFTGKTEKKGTH---------RGTVEWAIAWCEEN-PEITSYC 319
                      ++   E    + E +  +            VE A+ +       + S+ 
Sbjct: 236 KIIDDVIYMADTMQIEEAKEVEAEDENGNIVIKQRSAKFVEVEIAMNYTTSQRETVYSFV 295

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREP 377
           N I T EGGTH SG R ALTR I   A+     +  +      D+    V ++SV I EP
Sbjct: 296 NNINTHEGGTHVSGFRTALTRTINDIAKQMNLIKDKNGTFQGTDVREGLVCVISVKIPEP 355

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F GQTKTKL + +    V N +      YL  +P  A K++E ++     R   +K RE
Sbjct: 356 QFEGQTKTKLGNSEVTGIVSNIVGSNLKFYLEDHPKAAEKVIEKMVMSKRAREAAKKARE 415

Query: 438 VN-RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
           +  RK  +    LPGKLADCS      +E+FIVEG+SAGGSAKQ R+R  QA+LPLRGKI
Sbjct: 416 LVLRKNTLEVGSLPGKLADCSSKDPAESEIFIVEGNSAGGSAKQGRDRRFQAILPLRGKI 475

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556
           LNV  +G  K   N +I  ++ A G     +   + LRY K++IMTDADVDGAHI +L+L
Sbjct: 476 LNVEKSGIHKALENAEIRAMITAFGAGFGEEIDLKKLRYHKIVIMTDADVDGAHIRTLML 535

Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616
           TFFY+ + +LI + ++++  PPL++I  G    YA+ ++  +++    +  G+ K  I R
Sbjct: 536 TFFYRHLRELINEGYIYIAQPPLYKIQAGKAIRYAYSDDQMKQVTRVLENEGR-KYTIQR 594

Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           +KGLGEM   QL ET +D   RTLL+V +              N LMG K + R KFI++
Sbjct: 595 YKGLGEMNPEQLWETTLDPEVRTLLKVSMED----ASYADKMFNILMGDKVEPRRKFIED 650

Query: 677 RASFIDDVG 685
            A+++ ++ 
Sbjct: 651 NANYVRNLD 659


>gi|192291144|ref|YP_001991749.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris TIE-1]
 gi|192284893|gb|ACF01274.1| DNA topoisomerase IV, B subunit [Rhodopseudomonas palustris TIE-1]
          Length = 683

 Score =  612 bits (1577), Expect = e-173,   Method: Composition-based stats.
 Identities = 394/683 (57%), Positives = 501/683 (73%), Gaps = 10/683 (1%)

Query: 8   LFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIG 67
           L ++   +S     +       P +PA  +  A D Y A+ I +LEGLEPVR RPGMYIG
Sbjct: 5   LKASSKSKSGDDLFEGAPKSAAPKAPAKPSG-AEDGYTAADIEVLEGLEPVRRRPGMYIG 63

Query: 68  GTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNK 127
           GTDEKALHHLF+EVIDN+MDE +AG+A  IEV L  +GFLTV DNGRGIPV+ HPKFP K
Sbjct: 64  GTDEKALHHLFAEVIDNSMDEALAGHATFIEVELTADGFLTVSDNGRGIPVDPHPKFPKK 123

Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187
           S LE+I+ TLHAGGKFD+  YE SGGLHGVG+SVVNALS  L V VAR   +    F RG
Sbjct: 124 SALEVIMCTLHAGGKFDSKVYETSGGLHGVGVSVVNALSSRLEVEVARGQQLHRMVFERG 183

Query: 188 IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247
            P   LE   KV N+RGTR+ F+PD  IFG KA F   RL KM +SKAYL G VK  W C
Sbjct: 184 HPKGKLESLGKVNNRRGTRVRFKPDTDIFGAKAAFKPQRLFKMARSKAYLFGGVKIRWKC 243

Query: 248 DKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
           D E+ +    +P ++EF+FPGGLK +L   + N +L+  +IF GK+ + G H G  EWA+
Sbjct: 244 DPELLKGIEDVPAEDEFHFPGGLKDFLGAAIHNDTLVHPDIFAGKSGRNGAH-GACEWAV 302

Query: 307 AWC-EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMI 364
           AW  + +  ++SYCNT+ T +GGTHESGLR AL RG+K +AE     KRA SI S+D+M+
Sbjct: 303 AWTADADGFLSSYCNTVPTPDGGTHESGLRSALLRGLKDHAERAGQGKRASSITSEDVMV 362

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            A  +LSVF+REPEF GQTK +L + +AQ+ VE A++DPFDH+L  NP++A KLL++VIE
Sbjct: 363 GAAIMLSVFVREPEFQGQTKDRLATAEAQKIVEQAIKDPFDHWLSGNPVQANKLLDFVIE 422

Query: 425 RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           R+EERLRRR+++E++RKTA++KLRLPGKLADC+   A G+ELFIVEGDSAGGSAKQAR+R
Sbjct: 423 RAEERLRRRQEKEISRKTAVKKLRLPGKLADCTSTAAEGSELFIVEGDSAGGSAKQARDR 482

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
           S QAVLPLRGKILNVASAG +K+  N Q+ DL+QALG  T   YREEDLRY ++IIMTDA
Sbjct: 483 STQAVLPLRGKILNVASAGKDKVVANAQLSDLIQALGVSTGVNYREEDLRYSRIIIMTDA 542

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           DVDGAHIASLL+TFFY++M  LI++ HL+L  PPL+R+T G K+VYA D+ HK+++L++ 
Sbjct: 543 DVDGAHIASLLITFFYRQMPKLIDEGHLYLAVPPLYRLTHGAKTVYARDDAHKEELLKK- 601

Query: 605 KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMG 664
           + +   K+E+ RFKGLGEM+ +QLKET MD  KRT+LRV +  D      T +S+ +LMG
Sbjct: 602 EFNANAKVEVGRFKGLGEMMPAQLKETTMDPAKRTMLRVVLLPDDRDG--TANSVERLMG 659

Query: 665 TKADERFKFIQERASFIDD--VG 685
           TKA+ RF FI E+A F  D  + 
Sbjct: 660 TKAEARFAFISEKAEFASDELLD 682


>gi|191636829|ref|YP_001985995.1| DNA gyrase, B subunit [Lactobacillus casei BL23]
 gi|239630809|ref|ZP_04673840.1| DNA gyrase [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|301065132|ref|YP_003787155.1| DNA gyrase subunit B [Lactobacillus casei str. Zhang]
 gi|190711131|emb|CAQ65137.1| DNA gyrase, B subunit [Lactobacillus casei BL23]
 gi|239527092|gb|EEQ66093.1| DNA gyrase [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|300437539|gb|ADK17305.1| DNA gyrase, B subunit [Lactobacillus casei str. Zhang]
 gi|327380868|gb|AEA52344.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus casei
           LC2W]
 gi|327384032|gb|AEA55506.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus casei
           BD-II]
          Length = 653

 Score =  612 bits (1577), Expect = e-173,   Method: Composition-based stats.
 Identities = 261/667 (39%), Positives = 373/667 (55%), Gaps = 22/667 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86
            +  ++        +  YDAS I++L GLE VR RPGMYIG T  + LHHL  E+IDN +
Sbjct: 2   TDKKETAEEKKDELAAEYDASQIQVLSGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNGI 61

Query: 87  DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146
           DE +AG+A  IEV ++ +  +TV D+GRGIPV+   K   +  LE + T LHAGGKF   
Sbjct: 62  DEALAGFATRIEVEVNPDNSVTVTDDGRGIPVDIQSK-TGRPALETVYTVLHAGGKFGGG 120

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGT 205
            Y++SGGLHGVG SVVNALS +L VTV R    +   F RG   +P++          GT
Sbjct: 121 GYKVSGGLHGVGASVVNALSTDLDVTVTRGGKRYYIDFIRGKVNTPMKVIGTAPEHEHGT 180

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           ++ F PDP IF +   FD   L    +  A+L+  +K  ++  +         EK  F++
Sbjct: 181 KVHFLPDPDIFTEIRTFDDKILTTRIRELAFLNKGLKLTFTDKR-----AATHEKLVFHY 235

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILT 324
            GGLK+Y+    E +  +  E    + + KG    TVE A+ +  +      ++ N I T
Sbjct: 236 EGGLKSYVDFLTEKKENLLQEPIYVEGQDKGI---TVEVALQYTNDYHSTLLTFANNIHT 292

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQ 382
            EGGTHE+G + ALTR I  YA  +   +        DD+      ++SV   +P+F GQ
Sbjct: 293 YEGGTHETGFKTALTRVINDYARRSGALKDSDDPLSGDDVREGLTAVVSVKHPDPQFEGQ 352

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TKTKL + DA+  V+    D F+ +L+++P +   +++  +  S+ RL  ++ RE   +K
Sbjct: 353 TKTKLGNSDARTVVDRTFSDHFNKFLMEHPADGKLIIDKAMLASKARLAAKRAREVTRKK 412

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    LPGKLAD +      +ELFIVEGDSAGGSAK  R+R  QA+LP+RGKILNV  
Sbjct: 413 SGLEISNLPGKLADNTSKDPEISELFIVEGDSAGGSAKSGRSRLTQAILPIRGKILNVEK 472

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
           A  E+I  N++I  L  A+G      +     RY K+IIMTDADVDGAHI +LLLT  Y+
Sbjct: 473 ASMERILANEEIRTLFTAMGTGFGQDFDINKARYHKLIIMTDADVDGAHIRTLLLTLIYR 532

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
            M  +++  ++++  PPL+R+ QG  + Y   +E  Q IL +       K EI R+KGLG
Sbjct: 533 YMRPVLDAGYVYIAQPPLYRLRQGKMTQYIDSDEELQDILGQLPPS--PKPEIQRYKGLG 590

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           EM A+QL ET MD + R LLRV         +        LMG   + R KFI++ A F+
Sbjct: 591 EMDANQLWETTMDPDNRRLLRVS----PKDAEAADGVFEMLMGDHVEPRRKFIEDNAVFV 646

Query: 682 D--DVGT 686
           D  ++  
Sbjct: 647 DPNNIDA 653


>gi|239827049|ref|YP_002949673.1| DNA topoisomerase IV subunit B [Geobacillus sp. WCH70]
 gi|239807342|gb|ACS24407.1| DNA topoisomerase IV, B subunit [Geobacillus sp. WCH70]
          Length = 656

 Score =  612 bits (1577), Expect = e-173,   Method: Composition-based stats.
 Identities = 251/650 (38%), Positives = 365/650 (56%), Gaps = 34/650 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AGY N I V + 
Sbjct: 8   EYNDDAIQVLEGLEAVRRRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGYGNYILVKIH 67

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV+D GRG+P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 68  KDNSITVLDEGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 125

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+ L VT+ R   I+ Q+F  G       +K    NK GT I F+PDP IF     F
Sbjct: 126 NALSEWLVVTIHRDGFIYQQRFEHGGKPVTTLEKIGTTNKTGTIIQFKPDPTIFSTTT-F 184

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L +  +  A+L   +K     ++          ++ FY+  G++ +++   E++ +
Sbjct: 185 NYETLSERLRESAFLLKGLKIELIDER-------TGMRDVFYYENGIEAFVEYLNEDKDV 237

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           +   +   + E+ G     VE+A  + +   E   S+ N + T +GGTHE+G + A+TR 
Sbjct: 238 LHPVV-YFEGEQNGI---EVEFAFQFNDGYSENVLSFVNNVRTKDGGTHEAGAKTAMTRV 293

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397
             +YA       ++  ++   D+      I+SV I E   +F GQTK KL + +A+  V+
Sbjct: 294 FNEYARKMGLLKEKDKNLEGSDIREGLSAIISVRIPEHLLQFEGQTKGKLGTSEARSAVD 353

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKLA 454
             + +   ++L +NP  +T L++  I   + R   RK RE  R    RK +   L GKL 
Sbjct: 354 AVVSEHLTYFLQENPDISTMLIKKAIRAYQAREAARKAREEARSGKKRKGKETVLSGKLT 413

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
                     EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I 
Sbjct: 414 PAQSRNPKKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADILKNEEIN 473

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++ A+G      +  +D+ Y+KVIIMTDAD DGAHI  LLLTFFY+ M  LIE   +++
Sbjct: 474 TIIHAIGGGVGPDFSLDDINYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVYI 533

Query: 575 ISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
             PPL++I++G   K +  YA  +E  ++I+++F K       I R+KGLGEM A QL E
Sbjct: 534 ALPPLYKISKGTGKKEIIEYAWTDEQLKEIVKKFGK----GYTIQRYKGLGEMNADQLWE 589

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           T M+   RTL+RV I          +  +  LMG K + R K+I+   +F
Sbjct: 590 TTMNPETRTLIRVRIED----AARAERRVTTLMGDKVEPRRKWIEANVAF 635


>gi|163852535|ref|YP_001640578.1| DNA topoisomerase IV subunit B [Methylobacterium extorquens PA1]
 gi|163664140|gb|ABY31507.1| DNA topoisomerase IV, B subunit [Methylobacterium extorquens PA1]
          Length = 701

 Score =  611 bits (1576), Expect = e-173,   Method: Composition-based stats.
 Identities = 395/690 (57%), Positives = 501/690 (72%), Gaps = 11/690 (1%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           ++D + DLF          +E+ ++   +  SPA A ++A   YDAS+I +LEGLEPVR 
Sbjct: 17  VSDPARDLFGPGAKPPPAEAERRRRLTPVAPSPAPAPETAEAGYDASAIEVLEGLEPVRR 76

Query: 61  RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           RPGMYIGGTDE+ALHHLF+EVIDN+MDE +AG+A+ IEV L+ +G L V DNGRGIPV+ 
Sbjct: 77  RPGMYIGGTDERALHHLFAEVIDNSMDEAVAGHASFIEVELEESGSLVVTDNGRGIPVDP 136

Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
           HPKFP KS LE+I+TTLHAGGKFD+  YE SGGLHGVGISVVNALSD L V VAR  T++
Sbjct: 137 HPKFPGKSALEVIMTTLHAGGKFDSKVYETSGGLHGVGISVVNALSDVLEVEVARNQTLY 196

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
            Q FSRG     LE   +V+N+RGTR+ F PD +IFG    FD  RL KM +SKAYL G 
Sbjct: 197 RQCFSRGHAQGSLETIGRVQNRRGTRVRFHPDAQIFGS-LKFDPRRLFKMARSKAYLFGG 255

Query: 241 VKTCWSCDKEIAEK-YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
           V+  W C   + E    +P +    FPGGL  YL   +E + L+   IF+GK  K G+H 
Sbjct: 256 VEIRWRCAPALLEGLADVPAEAVHRFPGGLSDYLARDIEGKELVLDSIFSGKITKPGSH- 314

Query: 300 GTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISI 357
           G++EWA+AW   ++    SYCNTI T EGGTHE+GLRVAL R ++++AE     KR  ++
Sbjct: 315 GSLEWAVAWTVADDGVSHSYCNTIPTPEGGTHEAGLRVALLRALREHAERVNQAKRMTAV 374

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
            +DD+M +   +LSVFIREPEF GQTK KL +++A R VE A+RD FDH+L  +P +A K
Sbjct: 375 TTDDVMATCASMLSVFIREPEFQGQTKDKLATVEASRIVETAIRDAFDHWLAASPAQANK 434

Query: 418 LLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           LL+WVI+R+EERLRRR+++EV RK+A RKLRLPGKLADCS     G+E+FIVEGDSAGGS
Sbjct: 435 LLDWVIDRAEERLRRRQEKEVARKSATRKLRLPGKLADCSAAGTVGSEIFIVEGDSAGGS 494

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AKQAR+R+ QAVLPLRGKILNVASA  +K+  NQ I DL  ALGC T + +RE DLRY++
Sbjct: 495 AKQARDRATQAVLPLRGKILNVASASRDKLGANQLISDLTLALGCGTGANFREADLRYDR 554

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           VIIMTDADVDGAHIASLL+TFFY++M  LI++ HL+L  PPL+RI+QG KS YA D+  K
Sbjct: 555 VIIMTDADVDGAHIASLLITFFYRQMPKLIDKGHLYLAIPPLYRISQGAKSAYARDDADK 614

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           ++I++   K+G  K+EI RFKGLGEM+ +QLKET MD  KRTLLRV I     + + T D
Sbjct: 615 ERIIKTVFKNG--KVEIGRFKGLGEMMPAQLKETTMDPKKRTLLRVAILD--EARESTGD 670

Query: 658 SINKLMGTKADERFKFIQERASFID--DVG 685
           ++ +LMG K + RF FI ERASF D  ++ 
Sbjct: 671 TVERLMGNKPEARFAFITERASFADGTELD 700


>gi|255971553|ref|ZP_05422139.1| DNA gyrase subunit B [Enterococcus faecalis T1]
 gi|255962571|gb|EET95047.1| DNA gyrase subunit B [Enterococcus faecalis T1]
          Length = 649

 Score =  611 bits (1576), Expect = e-173,   Method: Composition-based stats.
 Identities = 252/659 (38%), Positives = 375/659 (56%), Gaps = 24/659 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              +  +  YDAS I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AG+A
Sbjct: 6   KNMRERAQEYDASQIQVLEGLEAVRKRPGMYIGSTSGEGLHHLVWEIVDNSIDEALAGFA 65

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             I+V ++ +  +TV+D+GRGIPV    K   +  +E + T LHAGGKF    Y++SGGL
Sbjct: 66  KSIQVIIEPDDSITVIDDGRGIPVGIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGL 124

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS  L V V +   ++ Q++ RG  +  L+  E+  ++ GT + F PDP+
Sbjct: 125 HGVGSSVVNALSTSLDVRVYKDGKVYYQEYRRGAVVDDLKVIEET-DRHGTTVHFIPDPE 183

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   +D  +L    +  A+L+  +       +E  E         +++ GG+K+Y++
Sbjct: 184 IFTETTVYDFDKLATRVRELAFLNRGLHISIEDRREGQEDKKE-----YHYEGGIKSYVE 238

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               N+ +I  E    + E++     TVE ++ + +     I S+ N I T EGGTHESG
Sbjct: 239 HLNANKDVIFPEPIFIEGEQQDI---TVEVSMQYADGYHSNILSFANNIHTYEGGTHESG 295

Query: 334 LRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            + +LTR I  YA   +  +     +  +D+      ++S+   +P+F GQTKTKL + +
Sbjct: 296 FKTSLTRVINDYARKQKLMKENDEKLTGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSE 355

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +   +    + F  +L++NP    +++E  +  S+ RL  ++ RE   RK A+    LP
Sbjct: 356 VRTVTDRLFSEYFTKFLMENPTVGKQIVEKGMLASKARLAAKRAREVTRRKGALEISNLP 415

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS       ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  +KI  N
Sbjct: 416 GKLADCSSKDPEKCELFIVEGDSAGGSAKQGRSREFQAILPIRGKILNVEKASMDKILAN 475

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  L  A+G      +     RY K++IMTDADVDGAHI +LLLT FY+ M  ++E  
Sbjct: 476 EEIRSLFTAMGTGFGEDFDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRFMRPIVEAG 535

Query: 571 HLFLISPPLFRITQGTKSVYAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           ++++  PPL+ + QG    Y       EE   K+LEE       K  + R+KGLGEM   
Sbjct: 536 YVYIAQPPLYGVKQGKNITYVQPGKHAEEELAKVLEELPAS--PKPSVQRYKGLGEMDDH 593

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           QL ET MD  KR + RV ++  +    +       LMG + + R  FI+E A ++ ++ 
Sbjct: 594 QLWETTMDPEKRLMARVSVDDAI----EADQIFEMLMGDRVEPRRAFIEENAHYVKNLD 648


>gi|300862234|ref|ZP_07108314.1| DNA gyrase, B subunit [Enterococcus faecalis TUSoD Ef11]
 gi|300848759|gb|EFK76516.1| DNA gyrase, B subunit [Enterococcus faecalis TUSoD Ef11]
          Length = 649

 Score =  611 bits (1576), Expect = e-173,   Method: Composition-based stats.
 Identities = 252/659 (38%), Positives = 375/659 (56%), Gaps = 24/659 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              +  +  YDAS I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AG+A
Sbjct: 6   KNMRERAQEYDASQIQVLEGLEAVRKRPGMYIGSTSGEGLHHLVWEIVDNSIDEALAGFA 65

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             I+V ++ +  +TV+D+GRGIPV    K   +  +E + T LHAGGKF    Y++SGGL
Sbjct: 66  KSIQVIIEPDDSITVIDDGRGIPVGIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGL 124

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS  L V V +   ++ Q++ RG  +  L+  E+  ++ GT + F PDP+
Sbjct: 125 HGVGSSVVNALSTSLDVRVYKDGKVYYQEYRRGAVVDDLKVIEET-DRHGTTVHFIPDPE 183

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   +D  +L    +  A+L+  +       +E  E         +++ GG+K+Y++
Sbjct: 184 IFTETTVYDFDKLATRVRELAFLNRGLHISIEDRREGQEDKKE-----YHYEGGIKSYVE 238

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               N+ +I  E    + E++     TVE ++ + +     I S+ N I T EGGTHESG
Sbjct: 239 HLNANKDVIFPEPVFIEGEQQDI---TVEVSMQYTDGYHSNILSFANNIHTYEGGTHESG 295

Query: 334 LRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            + +LTR I  YA   +  +     +  +D+      ++S+   +P+F GQTKTKL + +
Sbjct: 296 FKTSLTRVINDYARKQKLMKENDEKLTGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSE 355

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +   +    + F  +L++NP    +++E  +  S+ RL  ++ RE   RK A+    LP
Sbjct: 356 VRTVTDRLFSEYFTKFLMENPTVGKQIVEKGMLASKARLAAKRAREVTRRKGALEISNLP 415

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS       ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  +KI  N
Sbjct: 416 GKLADCSSKDPEKCELFIVEGDSAGGSAKQGRSREFQAILPIRGKILNVEKASMDKILAN 475

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  L  A+G      +     RY K++IMTDADVDGAHI +LLLT FY+ M  ++E  
Sbjct: 476 EEIRSLFTAMGTGFGEDFDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRFMRPIVEAG 535

Query: 571 HLFLISPPLFRITQGTKSVYAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           ++++  PPL+ + QG    Y       EE   K+LEE       K  + R+KGLGEM   
Sbjct: 536 YVYIAQPPLYGVKQGKNITYVQPGKHAEEELAKVLEELPAS--PKPSVQRYKGLGEMDDH 593

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           QL ET MD  KR + RV ++  +    +       LMG + + R  FI+E A ++ ++ 
Sbjct: 594 QLWETTMDPEKRLMARVSVDDAI----EADQIFEMLMGDRVEPRRAFIEENAHYVKNLD 648


>gi|227518104|ref|ZP_03948153.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis TX0104]
 gi|227555689|ref|ZP_03985736.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis HH22]
 gi|229547125|ref|ZP_04435850.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis TX1322]
 gi|229550695|ref|ZP_04439420.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis ATCC
           29200]
 gi|255974526|ref|ZP_05425112.1| subunit B [Enterococcus faecalis T2]
 gi|256618523|ref|ZP_05475369.1| DNA gyrase subunit B [Enterococcus faecalis ATCC 4200]
 gi|256761858|ref|ZP_05502438.1| hypothetical protein EFCG_02340 [Enterococcus faecalis T3]
 gi|256854985|ref|ZP_05560346.1| hypothetical protein EFYG_02228 [Enterococcus faecalis T8]
 gi|256957011|ref|ZP_05561182.1| DNA gyrase subunit B [Enterococcus faecalis DS5]
 gi|256960820|ref|ZP_05564991.1| hypothetical protein EFGG_02710 [Enterococcus faecalis Merz96]
 gi|256963987|ref|ZP_05568158.1| hypothetical protein EFHG_02347 [Enterococcus faecalis HIP11704]
 gi|257078688|ref|ZP_05573049.1| hypothetical protein EFIG_02258 [Enterococcus faecalis JH1]
 gi|257081351|ref|ZP_05575712.1| DNA gyrase subunit B [Enterococcus faecalis E1Sol]
 gi|257084008|ref|ZP_05578369.1| DNA gyrase subunit B [Enterococcus faecalis Fly1]
 gi|257087838|ref|ZP_05582199.1| DNA gyrase subunit B [Enterococcus faecalis D6]
 gi|257088490|ref|ZP_05582851.1| DNA gyrase B subunit gyrB [Enterococcus faecalis CH188]
 gi|257417430|ref|ZP_05594424.1| DNA gyrase subunit B [Enterococcus faecalis AR01/DG]
 gi|257421347|ref|ZP_05598337.1| DNA gyrase subunit B gyrB [Enterococcus faecalis X98]
 gi|293382658|ref|ZP_06628586.1| DNA gyrase, B subunit [Enterococcus faecalis R712]
 gi|293387930|ref|ZP_06632466.1| DNA gyrase, B subunit [Enterococcus faecalis S613]
 gi|294781253|ref|ZP_06746600.1| DNA gyrase, B subunit [Enterococcus faecalis PC1.1]
 gi|307268921|ref|ZP_07550285.1| DNA gyrase, B subunit [Enterococcus faecalis TX4248]
 gi|307274016|ref|ZP_07555226.1| DNA gyrase, B subunit [Enterococcus faecalis TX0855]
 gi|307276495|ref|ZP_07557615.1| DNA gyrase, B subunit [Enterococcus faecalis TX2134]
 gi|307284063|ref|ZP_07564233.1| DNA gyrase, B subunit [Enterococcus faecalis TX0860]
 gi|307287177|ref|ZP_07567248.1| DNA gyrase, B subunit [Enterococcus faecalis TX0109]
 gi|307296594|ref|ZP_07576414.1| DNA gyrase, B subunit [Enterococcus faecalis TX0411]
 gi|312901292|ref|ZP_07760575.1| DNA gyrase, B subunit [Enterococcus faecalis TX0470]
 gi|312903111|ref|ZP_07762292.1| DNA gyrase, B subunit [Enterococcus faecalis TX0635]
 gi|312908810|ref|ZP_07767749.1| DNA gyrase, B subunit [Enterococcus faecalis DAPTO 512]
 gi|312951716|ref|ZP_07770610.1| DNA gyrase, B subunit [Enterococcus faecalis TX0102]
 gi|312979548|ref|ZP_07791230.1| DNA gyrase, B subunit [Enterococcus faecalis DAPTO 516]
 gi|15982567|dbj|BAB69478.1| DNA gyrase B subunit [Enterococcus faecalis]
 gi|227074438|gb|EEI12401.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis TX0104]
 gi|227175199|gb|EEI56171.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis HH22]
 gi|229304128|gb|EEN70124.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis ATCC
           29200]
 gi|229307707|gb|EEN73694.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis TX1322]
 gi|255967398|gb|EET98020.1| subunit B [Enterococcus faecalis T2]
 gi|256598050|gb|EEU17226.1| DNA gyrase subunit B [Enterococcus faecalis ATCC 4200]
 gi|256683109|gb|EEU22804.1| hypothetical protein EFCG_02340 [Enterococcus faecalis T3]
 gi|256709498|gb|EEU24545.1| hypothetical protein EFYG_02228 [Enterococcus faecalis T8]
 gi|256947507|gb|EEU64139.1| DNA gyrase subunit B [Enterococcus faecalis DS5]
 gi|256951316|gb|EEU67948.1| hypothetical protein EFGG_02710 [Enterococcus faecalis Merz96]
 gi|256954483|gb|EEU71115.1| hypothetical protein EFHG_02347 [Enterococcus faecalis HIP11704]
 gi|256986718|gb|EEU74020.1| hypothetical protein EFIG_02258 [Enterococcus faecalis JH1]
 gi|256989381|gb|EEU76683.1| DNA gyrase subunit B [Enterococcus faecalis E1Sol]
 gi|256992038|gb|EEU79340.1| DNA gyrase subunit B [Enterococcus faecalis Fly1]
 gi|256995868|gb|EEU83170.1| DNA gyrase subunit B [Enterococcus faecalis D6]
 gi|256997302|gb|EEU83822.1| DNA gyrase B subunit gyrB [Enterococcus faecalis CH188]
 gi|257159258|gb|EEU89218.1| DNA gyrase subunit B [Enterococcus faecalis ARO1/DG]
 gi|257163171|gb|EEU93131.1| DNA gyrase subunit B gyrB [Enterococcus faecalis X98]
 gi|291079964|gb|EFE17328.1| DNA gyrase, B subunit [Enterococcus faecalis R712]
 gi|291082667|gb|EFE19630.1| DNA gyrase, B subunit [Enterococcus faecalis S613]
 gi|294451716|gb|EFG20171.1| DNA gyrase, B subunit [Enterococcus faecalis PC1.1]
 gi|295112344|emb|CBL30981.1| DNA gyrase subunit B [Enterococcus sp. 7L76]
 gi|306495930|gb|EFM65518.1| DNA gyrase, B subunit [Enterococcus faecalis TX0411]
 gi|306501775|gb|EFM71066.1| DNA gyrase, B subunit [Enterococcus faecalis TX0109]
 gi|306503434|gb|EFM72683.1| DNA gyrase, B subunit [Enterococcus faecalis TX0860]
 gi|306506822|gb|EFM75972.1| DNA gyrase, B subunit [Enterococcus faecalis TX2134]
 gi|306509324|gb|EFM78384.1| DNA gyrase, B subunit [Enterococcus faecalis TX0855]
 gi|306514729|gb|EFM83280.1| DNA gyrase, B subunit [Enterococcus faecalis TX4248]
 gi|310625248|gb|EFQ08531.1| DNA gyrase, B subunit [Enterococcus faecalis DAPTO 512]
 gi|310630289|gb|EFQ13572.1| DNA gyrase, B subunit [Enterococcus faecalis TX0102]
 gi|310633502|gb|EFQ16785.1| DNA gyrase, B subunit [Enterococcus faecalis TX0635]
 gi|311287730|gb|EFQ66286.1| DNA gyrase, B subunit [Enterococcus faecalis DAPTO 516]
 gi|311291669|gb|EFQ70225.1| DNA gyrase, B subunit [Enterococcus faecalis TX0470]
 gi|315026673|gb|EFT38605.1| DNA gyrase, B subunit [Enterococcus faecalis TX2137]
 gi|315030118|gb|EFT42050.1| DNA gyrase, B subunit [Enterococcus faecalis TX4000]
 gi|315033552|gb|EFT45484.1| DNA gyrase, B subunit [Enterococcus faecalis TX0017]
 gi|315036375|gb|EFT48307.1| DNA gyrase, B subunit [Enterococcus faecalis TX0027]
 gi|315143591|gb|EFT87607.1| DNA gyrase, B subunit [Enterococcus faecalis TX2141]
 gi|315148271|gb|EFT92287.1| DNA gyrase, B subunit [Enterococcus faecalis TX4244]
 gi|315151295|gb|EFT95311.1| DNA gyrase, B subunit [Enterococcus faecalis TX0012]
 gi|315153721|gb|EFT97737.1| DNA gyrase, B subunit [Enterococcus faecalis TX0031]
 gi|315155119|gb|EFT99135.1| DNA gyrase, B subunit [Enterococcus faecalis TX0043]
 gi|315158751|gb|EFU02768.1| DNA gyrase, B subunit [Enterococcus faecalis TX0312]
 gi|315163335|gb|EFU07352.1| DNA gyrase, B subunit [Enterococcus faecalis TX0645]
 gi|315165723|gb|EFU09740.1| DNA gyrase, B subunit [Enterococcus faecalis TX1302]
 gi|315168224|gb|EFU12241.1| DNA gyrase, B subunit [Enterococcus faecalis TX1341]
 gi|315170508|gb|EFU14525.1| DNA gyrase, B subunit [Enterococcus faecalis TX1342]
 gi|315174178|gb|EFU18195.1| DNA gyrase, B subunit [Enterococcus faecalis TX1346]
 gi|315573987|gb|EFU86178.1| DNA gyrase, B subunit [Enterococcus faecalis TX0309B]
 gi|315578843|gb|EFU91034.1| DNA gyrase, B subunit [Enterococcus faecalis TX0630]
 gi|315581938|gb|EFU94129.1| DNA gyrase, B subunit [Enterococcus faecalis TX0309A]
 gi|323479244|gb|ADX78683.1| DNA gyrase, B subunit [Enterococcus faecalis 62]
 gi|327533858|gb|AEA92692.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Enterococcus
           faecalis OG1RF]
 gi|329576322|gb|EGG57837.1| DNA gyrase, B subunit [Enterococcus faecalis TX1467]
          Length = 649

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 252/659 (38%), Positives = 375/659 (56%), Gaps = 24/659 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              +  +  YDAS I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AG+A
Sbjct: 6   KNMRERAQEYDASQIQVLEGLEAVRKRPGMYIGSTSGEGLHHLVWEIVDNSIDEALAGFA 65

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             I+V ++ +  +TV+D+GRGIPV    K   +  +E + T LHAGGKF    Y++SGGL
Sbjct: 66  KSIQVIIEPDDSITVIDDGRGIPVGIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGL 124

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS  L V V +   ++ Q++ RG  +  L+  E+  ++ GT + F PDP+
Sbjct: 125 HGVGSSVVNALSTSLDVRVYKDGKVYYQEYRRGAVVDDLKVIEET-DRHGTTVHFIPDPE 183

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   +D  +L    +  A+L+  +       +E  E         +++ GG+K+Y++
Sbjct: 184 IFTETTVYDFDKLATRVRELAFLNRGLHISIEDRREGQEDKKE-----YHYEGGIKSYVE 238

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               N+ +I  E    + E++     TVE ++ + +     I S+ N I T EGGTHESG
Sbjct: 239 HLNANKDVIFPEPIFIEGEQQDI---TVEVSMQYTDGYHSNILSFANNIHTYEGGTHESG 295

Query: 334 LRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            + +LTR I  YA   +  +     +  +D+      ++S+   +P+F GQTKTKL + +
Sbjct: 296 FKTSLTRVINDYARKQKLMKENDEKLTGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSE 355

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +   +    + F  +L++NP    +++E  +  S+ RL  ++ RE   RK A+    LP
Sbjct: 356 VRTVTDRLFSEYFTKFLMENPTVGKQIVEKGMLASKARLAAKRAREVTRRKGALEISNLP 415

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS       ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  +KI  N
Sbjct: 416 GKLADCSSKDPEKCELFIVEGDSAGGSAKQGRSREFQAILPIRGKILNVEKASMDKILAN 475

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  L  A+G      +     RY K++IMTDADVDGAHI +LLLT FY+ M  ++E  
Sbjct: 476 EEIRSLFTAMGTGFGEDFDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRFMRPIVEAG 535

Query: 571 HLFLISPPLFRITQGTKSVYAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           ++++  PPL+ + QG    Y       EE   K+LEE       K  + R+KGLGEM   
Sbjct: 536 YVYIAQPPLYGVKQGKNITYVQPGKHAEEELAKVLEELPAS--PKPSVQRYKGLGEMDDH 593

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           QL ET MD  KR + RV ++  +    +       LMG + + R  FI+E A ++ ++ 
Sbjct: 594 QLWETTMDPEKRLMARVSVDDAI----EADQIFEMLMGDRVEPRRAFIEENAHYVKNLD 648


>gi|15639990|ref|NP_219443.1| DNA gyrase, subunit B (gyrB) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189026229|ref|YP_001934001.1| DNA gyrase, subunit B [Treponema pallidum subsp. pallidum SS14]
 gi|3913790|sp|O08399|GYRB_TREPA RecName: Full=DNA gyrase subunit B
 gi|2102700|gb|AAB66715.1| DNA gyrase subunit B [Treponema pallidum]
 gi|3323330|gb|AAC65954.1| DNA gyrase, subunit B (gyrB) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018804|gb|ACD71422.1| DNA gyrase, subunit B [Treponema pallidum subsp. pallidum SS14]
 gi|291060363|gb|ADD73098.1| DNA gyrase, B subunit [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 637

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 255/650 (39%), Positives = 375/650 (57%), Gaps = 24/650 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y ASSI +LEGLE VR RPGMYIG T    LHHL  EV+DN +DE +AGY + I V L+
Sbjct: 4   EYSASSITVLEGLEAVRKRPGMYIGSTGPNGLHHLVYEVVDNCIDEAMAGYCDRITVVLE 63

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
               + V DNGRGIPV+ HP     S LE++LT LHAGGKFD  +Y++SGGLHGVG+SVV
Sbjct: 64  QGNVVRVEDNGRGIPVDVHP-HEGVSALEVVLTKLHAGGKFDKKSYKVSGGLHGVGVSVV 122

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  + VTV R    + QKF+ G+PL+P+EK+  V  KRGT I ++ DP IF +   +
Sbjct: 123 NALSLWVEVTVYRDGAEYYQKFNVGMPLAPVEKRG-VSEKRGTIIRWQADPSIFKETVAY 181

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   LL   +  A+L+  V      ++         ++ EF F GG++ ++      +S+
Sbjct: 182 DFDVLLTRLRELAFLNSTVVIQLRDER-----LATAKQVEFAFEGGIRHFVSYLNRGKSV 236

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +       +  K       VE A+ + +     + S+ N I T EGGTH  G + ALTR 
Sbjct: 237 VPERPLYIEGSKSDVL---VEVALQYHDGYTENVQSFVNDINTREGGTHLEGFKSALTRV 293

Query: 342 IKKYAEL-----TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
              + +       + +R   ++ +D+      +LSV I EP+F GQTKTKL + + +  V
Sbjct: 294 ANDFLKKSPKLAKKIEREEKLVGEDVRAGLTVVLSVKIPEPQFEGQTKTKLGNSEVRGIV 353

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLAD 455
           ++ + +    Y  QNP   TK+LE  I  ++ RL  R+ +E  R+ + +    LPGKLAD
Sbjct: 354 DSLVGERLTLYFEQNPGVLTKILEKSIAEAQARLAARRAKEAARRKSGMDSFGLPGKLAD 413

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS       E++IVEGDSAGGSAK+ R+   QA+LPL GK+LNV     +K+ +N+++  
Sbjct: 414 CSLKDPAKCEVYIVEGDSAGGSAKKGRDSKTQAILPLWGKMLNVEKTRLDKVLHNEKLQP 473

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++  LG      +    +RY KVIIM DADVDG+HI +LLLTFF++ +  +IE  +++L 
Sbjct: 474 IIATLGTGVGKDFDLTRIRYHKVIIMADADVDGSHIRTLLLTFFFRYLPQIIEAGYVYLA 533

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+RI    K +Y + +  + + LE   K  K  + + R+KGLGEM  +QL ET M+ 
Sbjct: 534 MPPLYRIAWSKKELYVYSDTERDEALESIGK--KSGVAVQRYKGLGEMDGTQLWETTMNP 591

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +R +++V ++  +    +     + LMG   + R KFI+E A +   + 
Sbjct: 592 VRRKMMQVVLSDAV----EADRVFSTLMGEDVEPRRKFIEENAIYAR-LD 636


>gi|29376174|ref|NP_815328.1| DNA topoisomerase IV subunit B [Enterococcus faecalis V583]
 gi|227518804|ref|ZP_03948853.1| DNA topoisomerase IV subunit B [Enterococcus faecalis TX0104]
 gi|229545771|ref|ZP_04434496.1| DNA topoisomerase IV subunit B [Enterococcus faecalis TX1322]
 gi|229549961|ref|ZP_04438686.1| DNA topoisomerase IV subunit B [Enterococcus faecalis ATCC 29200]
 gi|256853176|ref|ZP_05558546.1| topoisomerase IV B subunit [Enterococcus faecalis T8]
 gi|257422560|ref|ZP_05599550.1| topoisomerase IV subunit B [Enterococcus faecalis X98]
 gi|293382943|ref|ZP_06628861.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis R712]
 gi|293389568|ref|ZP_06634025.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis S613]
 gi|294781701|ref|ZP_06747036.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis PC1.1]
 gi|300861193|ref|ZP_07107280.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TUSoD Ef11]
 gi|307270968|ref|ZP_07552251.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX4248]
 gi|307273174|ref|ZP_07554420.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0855]
 gi|307274908|ref|ZP_07556071.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX2134]
 gi|307289156|ref|ZP_07569112.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0109]
 gi|307291946|ref|ZP_07571815.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0411]
 gi|312899465|ref|ZP_07758795.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0470]
 gi|312903358|ref|ZP_07762538.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0635]
 gi|312907586|ref|ZP_07766577.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis DAPTO 512]
 gi|312910204|ref|ZP_07769051.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis DAPTO 516]
 gi|312951548|ref|ZP_07770444.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0102]
 gi|15982570|dbj|BAB69480.1| topoisomerase IV B subunit [Enterococcus faecalis]
 gi|29343637|gb|AAO81398.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis V583]
 gi|227073717|gb|EEI11680.1| DNA topoisomerase IV subunit B [Enterococcus faecalis TX0104]
 gi|229304874|gb|EEN70870.1| DNA topoisomerase IV subunit B [Enterococcus faecalis ATCC 29200]
 gi|229309083|gb|EEN75070.1| DNA topoisomerase IV subunit B [Enterococcus faecalis TX1322]
 gi|256711635|gb|EEU26673.1| topoisomerase IV B subunit [Enterococcus faecalis T8]
 gi|257164384|gb|EEU94344.1| topoisomerase IV subunit B [Enterococcus faecalis X98]
 gi|291079608|gb|EFE16972.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis R712]
 gi|291081185|gb|EFE18148.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis S613]
 gi|294451253|gb|EFG19720.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis PC1.1]
 gi|300850232|gb|EFK77982.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TUSoD Ef11]
 gi|306496944|gb|EFM66492.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0411]
 gi|306499865|gb|EFM69226.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0109]
 gi|306508356|gb|EFM77463.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX2134]
 gi|306510159|gb|EFM79183.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0855]
 gi|306512466|gb|EFM81115.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX4248]
 gi|310626614|gb|EFQ09897.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis DAPTO 512]
 gi|310630514|gb|EFQ13797.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0102]
 gi|310633234|gb|EFQ16517.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0635]
 gi|311289477|gb|EFQ68033.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis DAPTO 516]
 gi|311293335|gb|EFQ71891.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0470]
 gi|315029334|gb|EFT41266.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX4000]
 gi|315034019|gb|EFT45951.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0017]
 gi|315037028|gb|EFT48960.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0027]
 gi|315147315|gb|EFT91331.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX4244]
 gi|315152429|gb|EFT96445.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0031]
 gi|315155702|gb|EFT99718.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0043]
 gi|315158127|gb|EFU02144.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0312]
 gi|315164065|gb|EFU08082.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX1302]
 gi|315168985|gb|EFU13002.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX1341]
 gi|315169781|gb|EFU13798.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX1342]
 gi|315172254|gb|EFU16271.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX1346]
 gi|315575816|gb|EFU88007.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0309B]
 gi|315577656|gb|EFU89847.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0630]
 gi|315580468|gb|EFU92659.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0309A]
 gi|323480780|gb|ADX80219.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis 62]
 gi|327535184|gb|AEA94018.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Enterococcus faecalis
           OG1RF]
          Length = 685

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 242/657 (36%), Positives = 361/657 (54%), Gaps = 33/657 (5%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +  ++ Y+ +SI++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DE ++GY N 
Sbjct: 2   AKKINNEYNDASIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGNE 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V++  +  + V D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHG
Sbjct: 62  INVTIQKDNSICVADSGRGMPTGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHG 119

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           VG SVVNALS  L V + R    + ++F  G  P+  L+K  K + + GT +TF PD  I
Sbjct: 120 VGASVVNALSKWLEVHIVRDGVEYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDDTI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     F    L +  +  A+L   VK   + ++        P++E F++  G+K ++  
Sbjct: 180 FSTTN-FSYEILAERLRESAFLLKGVKITLTDER-----GEEPKEEVFHYEEGIKEFVAY 233

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
             E +  ++  +      K+G     VE A  + +   E   S+ N + T +GGTHE G+
Sbjct: 234 LNEEKDTLTPVV-YFSGAKEGI---EVELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGM 289

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390
           + ++T+   +YA       ++  ++   D       +LS+ + E   +F GQTK KL + 
Sbjct: 290 KTSMTKAYNEYARKVGLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTP 349

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---L 447
            A+  V+N + +    YL +N   +  L+   I+  E R   RK RE +R    RK    
Sbjct: 350 LARTVVDNVVGEQMGFYLQENSEMSQSLIRKAIKAREAREAARKAREESRNGKKRKKGES 409

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            L GKL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I
Sbjct: 410 LLSGKLTPAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDI 469

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N++I  ++  +G     ++  ED  Y+K+IIMTDAD DGAHI  LLLTFFY+ M  LI
Sbjct: 470 LKNEEINTMIYTIGAGVGPEFSIEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLI 529

Query: 568 EQKHLFLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
           E   +++  PPL+++++G   KSV  YA  +    +++++  K       + R+KGLGEM
Sbjct: 530 EAGKVYIALPPLYKVSKGTGKKSVIEYAWTDGELAEVIDKVGK----GYMLQRYKGLGEM 585

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            A QL ET MD   RTL+RV I+         +  +  LMG K + R K+I++   F
Sbjct: 586 NAEQLWETTMDPETRTLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIEQHVQF 638


>gi|317504159|ref|ZP_07962158.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella salivae
           DSM 15606]
 gi|315664735|gb|EFV04403.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella salivae
           DSM 15606]
          Length = 656

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 264/668 (39%), Positives = 392/668 (58%), Gaps = 29/668 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
             NQ++  NY AS+I++LEGLE VR RP MYIG   EK LHHL +E +DN++DE +AGY 
Sbjct: 2   AENQNSEANYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLINETVDNSIDEAMAGYC 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             +E++L+ +G +TV DNGRGIPV+ H K    S LE+++T LHAGGKFD  +Y++SGGL
Sbjct: 62  TDVEITLNEDGSVTVEDNGRGIPVDEHKKLHK-SALEVVMTVLHAGGKFDKGSYKVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+S VNALS  +   V R   I+ Q++ +G PL P++   +    RGTR  F PDP 
Sbjct: 121 HGVGVSCVNALSTHMLSQVFRDGKIYQQEYEKGKPLYPVKVVGETTK-RGTRQQFWPDPT 179

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     +    +    +  AYL+  ++   +  +   ++ G   +E F+   GLK +++
Sbjct: 180 IFTT-TTYKWDIVASRMRELAYLNAGIRITLTDMR--HDEEGKIRQEVFHAKDGLKEFVR 236

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               +R+ +  ++   KTEK+G     +E AI +  +    I SY N I T EGGTH +G
Sbjct: 237 YVDRHRTHLFDDVIYLKTEKQGIP---IEVAIMYNTDYSENIHSYVNNINTIEGGTHLTG 293

Query: 334 LRVALTRGIKKYAE------LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
            R ALTR +K YA+          K  I I  +D       ++S+ + EP+F GQTKTKL
Sbjct: 294 FRAALTRTLKAYADAEPTIAKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKL 353

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRK 446
            + +    V+ A+ +   +YL ++PIEA K+ E V+  +  R+  RK RE   RK  +  
Sbjct: 354 GNSEVSGAVQQAVGEALSNYLEEHPIEAKKICEKVVLAATARIAARKARESVQRKNVMTG 413

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADCS       E+F+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV      +
Sbjct: 414 GGLPGKLADCSNKDPKECEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQWHR 473

Query: 507 IRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           +   + +M+++Q++G R         +   + LRY+K+IIMTDADVDG+HI +L++T FY
Sbjct: 474 VFEAESVMNIIQSIGVRFGVEGEDDREANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFY 533

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF--KKHGKGKIEISRFK 618
           + M  +IE  HL++ +PPL++ T    S Y + E+ +Q  ++++   K     +   R+K
Sbjct: 534 RFMPKVIEDGHLYIATPPLYKCTYKKVSEYCYTEQQRQAFIDKYVDGKEDDKGLHTQRYK 593

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           GLGEM   QL ET MD   R L +V I     +  +  +  + LMG   + R +FI++ A
Sbjct: 594 GLGEMNPEQLWETTMDPKSRLLKQVTI----QNAAEADEIFSMLMGDDVEPRREFIEQNA 649

Query: 679 SFIDDVGT 686
           ++  ++  
Sbjct: 650 TYA-NIDA 656


>gi|315145098|gb|EFT89114.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX2141]
 gi|315160386|gb|EFU04403.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0645]
          Length = 685

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 242/657 (36%), Positives = 361/657 (54%), Gaps = 33/657 (5%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +  ++ Y+ +SI++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DE ++GY N 
Sbjct: 2   AKKINNEYNDASIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGNE 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V++  +  + V D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHG
Sbjct: 62  INVTIQKDNSICVADSGRGMPTGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHG 119

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           VG SVVNALS  L V + R    + ++F  G  P+  L+K  K + + GT +TF PD  I
Sbjct: 120 VGASVVNALSKWLEVHIVRDGVEYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDDTI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     F    L +  +  A+L   VK   + ++        P++E F++  G+K ++  
Sbjct: 180 FSTTN-FSYEILAERLRESAFLLKGVKITLTDER-----GEEPKEEVFHYEEGIKEFVAY 233

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
             E +  ++  +      K+G     VE A  + +   E   S+ N + T +GGTHE G+
Sbjct: 234 LNEEKDTLTPVV-YFSGAKEGI---EVELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGM 289

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390
           + ++T+   +YA       ++  ++   D       +LS+ + E   +F GQTK KL + 
Sbjct: 290 KTSMTKAYNEYARKVGLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTP 349

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---L 447
            A+  V+N + +    YL +N   +  L+   I+  E R   RK RE +R    RK    
Sbjct: 350 LARTVVDNVVGEQMGFYLQENSEMSQSLIRKAIKAREAREAARKAREESRNGKKRKKGES 409

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            L GKL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I
Sbjct: 410 LLSGKLTPAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDI 469

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N++I  ++  +G     ++  ED  Y+K+IIMTDAD DGAHI  LLLTFFY+ M  LI
Sbjct: 470 LKNEEINTMIYTIGAGVGPEFSIEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLI 529

Query: 568 EQKHLFLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
           E   +++  PPL+++++G   KSV  YA  +    +++++  K       + R+KGLGEM
Sbjct: 530 EAGKVYIALPPLYKVSKGTGKKSVIEYAWTDGELAEVIDKVGK----GYMLQRYKGLGEM 585

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            A QL ET MD   RTL+RV I+         +  +  LMG K + R K+I++   F
Sbjct: 586 NAEQLWETTMDPETRTLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIEQHVQF 638


>gi|126735157|ref|ZP_01750903.1| DNA topoisomerase IV, B subunit [Roseobacter sp. CCS2]
 gi|126715712|gb|EBA12577.1| DNA topoisomerase IV, B subunit [Roseobacter sp. CCS2]
          Length = 652

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 344/652 (52%), Positives = 443/652 (67%), Gaps = 10/652 (1%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           +    D+Y+A SI +LEGLEPVR RPGMYIGGTDE+ALHHL +EV+DN+MDE +AG+AN 
Sbjct: 7   SNKGPDDYNADSIEVLEGLEPVRKRPGMYIGGTDERALHHLVAEVLDNSMDEAVAGHANR 66

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV L  +  +T+ DNGRGIP++ HPKFP+KS LE+IL TLHAGGKF    Y+ SGGLHG
Sbjct: 67  IEVELHADYSVTIKDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQTSGGLHG 126

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALSD L V VAR   I+ Q+FSRGIPL P+EK     N+RGT  TF  D +IF
Sbjct: 127 VGASVVNALSDSLVVQVARNKEIYEQRFSRGIPLGPVEKVGSAPNRRGTTFTFHADAEIF 186

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
           G    F  ARL K  +SKAYL   V+  W  + +  E    P +  F+FPGGL  YL+  
Sbjct: 187 GS-HRFKPARLFKSIRSKAYLFSGVEIRWKSEIDDGE---TPTEATFHFPGGLSDYLKET 242

Query: 277 LENRSLISSEIFTG--KTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESG 333
           L   +  + + F G    ++K    G VEWAI W    +  I SYCNT+ T EGGTH SG
Sbjct: 243 LGTATTYADKPFAGTVDFQEKFGEPGKVEWAINWTPVRDGFIQSYCNTVPTPEGGTHVSG 302

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
              A+ +GIK Y EL+ NK+A  I  DDLM     ++S FIR+P F GQTK +L S  A 
Sbjct: 303 FWAAILKGIKAYGELSGNKKAGQITRDDLMSGGCALVSCFIRDPAFVGQTKDRLSSEIAA 362

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
           +  E A+RD FD++L  +   A  +L++++ R+EERLRRR+++E  RK+A +KLRLPGKL
Sbjct: 363 KMTEGAVRDHFDNWLANDTKSAGAILDFLVLRAEERLRRRQEKETARKSATKKLRLPGKL 422

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
            DC+     GTELFIVEGDSAGGS K AR+R  QA+LPL+GKILNV  A S K+  N +I
Sbjct: 423 TDCTSKDRVGTELFIVEGDSAGGSGKGARDRKTQALLPLKGKILNVLGAASSKLTTNAEI 482

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            DL +ALG    +++  +DLRY+K+IIMTDADVDGAHIASLL+TFF+ +M  LI+Q HL+
Sbjct: 483 NDLCEALGVGMGTKFNVDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDQGHLY 542

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           L  PPL+R+TQG K VY  D+  K  ++ +    GKGKI++ RFKGLGEM A  LKET M
Sbjct: 543 LACPPLYRLTQGAKRVYVADDAEKDAVMAK-GLGGKGKIDLQRFKGLGEMDAKDLKETTM 601

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D   R L+RV ++ D     DT D + +LMG K + RF++IQE A F++++ 
Sbjct: 602 DPATRKLIRVTVHDDE--PGDTADLVERLMGKKPELRFQYIQENARFVEELD 651


>gi|293568154|ref|ZP_06679490.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E1071]
 gi|291589144|gb|EFF20956.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E1071]
          Length = 692

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 249/657 (37%), Positives = 360/657 (54%), Gaps = 33/657 (5%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +  ++ Y+ SSI++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DE ++GY + 
Sbjct: 13  AKKVNNEYNDSSIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGSE 72

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+V++  +  +TV D+GRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHG
Sbjct: 73  IDVTIHEDNSITVADSGRGMPVGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHG 130

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           VG SVVNALS  L VT+ R    + QKF  G  P   L+K  K +   GT + F PD  I
Sbjct: 131 VGASVVNALSKWLTVTIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTTVHFLPDDTI 190

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     F    L +  +  A+L   VK   S  +        P KE F++  G+K ++  
Sbjct: 191 FSTT-KFSYEILAERLRESAFLLKGVKISLSDLR-----GEEPVKEIFHYEEGIKEFVDY 244

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
             E +  ++  +     EK+G     VE A  + +   E   S+ N + T +GGTHE+G+
Sbjct: 245 LNEEKDTLTPVV-YFSGEKEGI---EVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGM 300

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390
           + A+T+   +YA       +R  ++   D       +LS+ + E   +F GQTK KL + 
Sbjct: 301 KAAMTKSYNEYARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTP 360

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---L 447
            A+  V+N + +    YL +N   +  L+   I+  E R   RK RE +R    RK    
Sbjct: 361 VARTVVDNVISEQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGES 420

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            L GKL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I
Sbjct: 421 LLSGKLTPAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDI 480

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N++I  ++  +G     ++  ED  Y+KVIIMTDAD DGAHI  LLLTFFY+ M  LI
Sbjct: 481 LKNEEINTMIYTIGAGVGPEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLI 540

Query: 568 EQKHLFLISPPLFRITQG---TKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
           E   +++  PPL+++++G    + + YA  ++    ++++  K       + R+KGLGEM
Sbjct: 541 EAGKVYIALPPLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGK----GYMLQRYKGLGEM 596

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            A QL ET MD   RTL+RV I+         +  +  LMG K + R K+I+    F
Sbjct: 597 NAEQLWETTMDPTSRTLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIENHVQF 649


>gi|293563433|ref|ZP_06677882.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E1162]
 gi|314938043|ref|ZP_07845353.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0133a04]
 gi|314941971|ref|ZP_07848832.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0133C]
 gi|314948776|ref|ZP_07852148.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0082]
 gi|314951794|ref|ZP_07854833.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0133A]
 gi|314991799|ref|ZP_07857257.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0133B]
 gi|314995840|ref|ZP_07860927.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0133a01]
 gi|291604694|gb|EFF34179.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E1162]
 gi|313589944|gb|EFR68789.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0133a01]
 gi|313593610|gb|EFR72455.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0133B]
 gi|313596073|gb|EFR74918.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0133A]
 gi|313599223|gb|EFR78068.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0133C]
 gi|313642618|gb|EFS07198.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0133a04]
 gi|313644842|gb|EFS09422.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0082]
          Length = 692

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 249/657 (37%), Positives = 360/657 (54%), Gaps = 33/657 (5%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +  ++ Y+ SSI++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DE ++GY + 
Sbjct: 13  AKKVNNEYNDSSIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGSE 72

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+V++  +  +TV D+GRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHG
Sbjct: 73  IDVTIHEDNSITVADSGRGMPVGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHG 130

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           VG SVVNALS  L VT+ R    + QKF  G  P   L+K  K +   GT + F PD  I
Sbjct: 131 VGASVVNALSKWLIVTIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTTVHFLPDDTI 190

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     F    L +  +  A+L   VK   S  +        P KE F++  G+K ++  
Sbjct: 191 FSTT-KFSYEILAERLRESAFLLKGVKISLSDLR-----GEEPVKEIFHYEEGIKEFVDY 244

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
             E +  ++  +     EK+G     VE A  + +   E   S+ N + T +GGTHE+G+
Sbjct: 245 LNEEKDTLTPVV-YFSGEKEGI---EVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGM 300

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390
           + A+T+   +YA       +R  ++   D       +LS+ + E   +F GQTK KL + 
Sbjct: 301 KAAMTKSYNEYARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTP 360

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---L 447
            A+  V+N + +    YL +N   +  L+   I+  E R   RK RE +R    RK    
Sbjct: 361 VARTVVDNVISEQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGES 420

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            L GKL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I
Sbjct: 421 LLSGKLTPAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDI 480

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N++I  ++  +G     ++  ED  Y+KVIIMTDAD DGAHI  LLLTFFY+ M  LI
Sbjct: 481 LKNEEINTMIYTIGAGVGPEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLI 540

Query: 568 EQKHLFLISPPLFRITQG---TKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
           E   +++  PPL+++++G    + + YA  ++    ++++  K       + R+KGLGEM
Sbjct: 541 EAGKVYIALPPLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGK----GYMLQRYKGLGEM 596

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            A QL ET MD   RTL+RV I+         +  +  LMG K + R K+I+    F
Sbjct: 597 NAEQLWETTMDPTSRTLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIENHVQF 649


>gi|57651113|ref|YP_184916.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus COL]
 gi|81859679|sp|Q5HJZ1|GYRB_STAAC RecName: Full=DNA gyrase subunit B
 gi|57285299|gb|AAW37393.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus COL]
          Length = 644

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 249/657 (37%), Positives = 378/657 (57%), Gaps = 20/657 (3%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
            A ++ + +DNY A  I++LEGLE  R RPGMYIG T E+ LHHL  E++DN++DE +AG
Sbjct: 3   TALSDVNNTDNYGAGQIQVLEGLEAARKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 62

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           YAN IEV ++ + ++ V DNGRGIPV+   K   +  +E+ILT LHAGGKF    Y++SG
Sbjct: 63  YANQIEVVIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 121

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG SVVNALS +L V V R  TI+ Q + +G+P   L++     +K GT I F+ D
Sbjct: 122 GLHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKAD 180

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            +IF +   ++   L +  +  A+L+  ++     +++         ++ +++ GG+K+Y
Sbjct: 181 GEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEE----NVREDSYHYEGGIKSY 236

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++   EN+  I  E       K       VE AI +       + +Y N I T EGGTHE
Sbjct: 237 VELLNENKEPIHDEPIYIHQSKDDI---EVEIAIQYNSGYATNLLTYANNIHTYEGGTHE 293

Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G + ALTR +  Y   ++  +        +D       I+S+   +P+F GQTKTKL +
Sbjct: 294 DGFKRALTRVLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGN 353

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLR 448
            + ++ V+    + F+ +L +NP  A  ++E  ++        ++ +    RK+A+    
Sbjct: 354 SEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVAS 413

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS       E+F+VEGDSAGGS K  R+   QA+LPLRGKILNV  A  ++I 
Sbjct: 414 LPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRIL 473

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           NN +I  ++ A G      +     RY K++IMTDADVDGAHI +LLLTFFY+ M  LIE
Sbjct: 474 NNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 533

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             ++++  PPL+++TQG +  Y +++    K+  E   +   K  I+R+KGLGEM A QL
Sbjct: 534 AGYVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSEL--NPTPKWSIARYKGLGEMNADQL 591

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            ET M+   R LL+V++   +    +   +   LMG   + R +FI++ A +  ++ 
Sbjct: 592 WETTMNPEHRALLQVKLEDAI----EADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 643


>gi|116511733|ref|YP_808949.1| DNA gyrase subunit B [Lactococcus lactis subsp. cremoris SK11]
 gi|125624430|ref|YP_001032913.1| DNA gyrase subunit B [Lactococcus lactis subsp. cremoris MG1363]
 gi|116107387|gb|ABJ72527.1| DNA gyrase subunit B [Lactococcus lactis subsp. cremoris SK11]
 gi|124493238|emb|CAL98205.1| topoisomerase IV subunit B [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300071217|gb|ADJ60617.1| DNA gyrase subunit B [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 651

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 259/649 (39%), Positives = 379/649 (58%), Gaps = 23/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +D YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ IEV 
Sbjct: 12  ADEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIEVF 71

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGVG S
Sbjct: 72  IEPDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 130

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  L VTV +    + Q++ RG+    L+   +  + RGT + F PDP+IF +  
Sbjct: 131 VVNALSTTLDVTVHKDGQKYFQEYHRGLVRDDLKIIGET-DLRGTTVHFVPDPEIFTETV 189

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD  +L    +  A+L+  ++   +  +E  EK     +  F++ GG+++Y++   EN+
Sbjct: 190 EFDFDKLATRVRELAFLNRGLRISLTDKREGNEKN----EVHFHYEGGIQSYVEYLNENK 245

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALT 339
           ++I       + E  G     VE A+ + +     + S+ N I T EGGTHE G R ALT
Sbjct: 246 TVIFEPAIFTEGEMDGI---AVEVAMQYTDTYHSVVMSFANNINTHEGGTHEQGFRTALT 302

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA+  +   +   ++  DD+      ++SV    P+F GQTKTKL + +    V 
Sbjct: 303 RVINNYAKQNKILKENEDNLTGDDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVTGIVN 362

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
               +    ++++NP  A K++E  I  S+ R+  ++ RE   +K+ +    LPGKLADC
Sbjct: 363 KLFAEALTTFMLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADC 422

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I  L
Sbjct: 423 SSNNPEQTELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSL 482

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G      Y     RY K++IMTDADVDGAHI +LLLT FY+ M  ++E  ++++  
Sbjct: 483 FTAMGTGFGGDYDLSKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGYVYIAQ 542

Query: 577 PPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           PP++ I  G+++  Y       E+  Q+ L  +   G+ K  + R+KGLGEM   QL ET
Sbjct: 543 PPIYGIKVGSETKEYIQPGENQEKDLQEALARW-AQGRTKPTVQRYKGLGEMDDHQLWET 601

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            MD   R + RV +        +     + LMG + + R +FI+  A +
Sbjct: 602 TMDPEHRLMARVSVED----AAEADKIFDMLMGDRVEPRREFIENNAQY 646


>gi|315150486|gb|EFT94502.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0012]
          Length = 685

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 242/657 (36%), Positives = 361/657 (54%), Gaps = 33/657 (5%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +  ++ Y+ +SI++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DE ++GY N 
Sbjct: 2   AKKINNEYNDASIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGNE 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V++  +  + V D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHG
Sbjct: 62  INVTIQKDNSICVADSGRGMPTGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHG 119

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           VG SVVNALS  L V + R    + ++F  G  P+  L+K  K + + GT +TF PD  I
Sbjct: 120 VGASVVNALSKWLEVHIVRDGVEYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDDTI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     F    L +  +  A+L   VK   + ++        P++E F++  G+K ++  
Sbjct: 180 FSTTN-FSYEILAERLRESAFLLKGVKITLTDER-----GEEPKEEVFHYEEGIKEFVAY 233

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
             E +  ++  +      K+G     VE A  + +   E   S+ N + T +GGTHE G+
Sbjct: 234 LNEEKDTLTPVV-YFSGAKEGI---EVELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGM 289

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390
           + ++T+   +YA       ++  ++   D       +LS+ + E   +F GQTK KL + 
Sbjct: 290 KTSMTKAYNEYARKVGLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTP 349

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---L 447
            A+  V+N + +    YL +N   +  L+   I+  E R   RK RE +R    RK    
Sbjct: 350 LARTVVDNVVGEQMGFYLQENSEMSQSLIRKAIKAREAREAARKAREESRNGKKRKKGES 409

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            L GKL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I
Sbjct: 410 LLSGKLTPAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDI 469

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N++I  ++  +G     ++  ED  Y+K+IIMTDAD DGAHI  LLLTFFY+ M  LI
Sbjct: 470 LKNEEINTMIYTIGAGVGPEFSIEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLI 529

Query: 568 EQKHLFLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
           E   +++  PPL+++++G   KSV  YA  +    +++++  K       + R+KGLGEM
Sbjct: 530 EAGKVYIALPPLYKVSKGTGKKSVIEYAWTDGELSEVIDKVGK----GYMLQRYKGLGEM 585

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            A QL ET MD   RTL+RV I+         +  +  LMG K + R K+I++   F
Sbjct: 586 NAEQLWETTMDPETRTLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIEQHVQF 638


>gi|110598305|ref|ZP_01386580.1| DNA gyrase, B subunit [Chlorobium ferrooxidans DSM 13031]
 gi|110340113|gb|EAT58613.1| DNA gyrase, B subunit [Chlorobium ferrooxidans DSM 13031]
          Length = 649

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 264/666 (39%), Positives = 375/666 (56%), Gaps = 25/666 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86
            +  D  +    +A   Y A++I++L+G+E VRMRP MYIG    + LHHL  E++DN++
Sbjct: 1   MQEDDILSTVAPTAPSTYGANNIQVLDGIEHVRMRPAMYIGDIHSRGLHHLVYEIVDNSI 60

Query: 87  DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146
           DE + G+ + I V+L+  G +TV+D GRGIPV+ HP+   KS LE+++T + AGGKFD  
Sbjct: 61  DETLGGFNDYIFVALNPEGSVTVIDRGRGIPVDIHPE-KQKSALELVMTVIGAGGKFDKG 119

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
            Y++SGGLHGVG SVVNALS+   V V R   ++ Q+F RGIP   +    K   K  T+
Sbjct: 120 AYKVSGGLHGVGASVVNALSEWCEVEVYRDGNVYFQRFERGIPQGDVRVIGKTDKKG-TK 178

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
            TF PD +IF     F    ++   +  A+L+  +       + I E         F++ 
Sbjct: 179 TTFMPDHQIFKT-TEFRKDIIIDRMRELAFLNKELSITVQDTEGIDE--------IFHYV 229

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+K ++Q   +NR  +  E      E+  T    VE A+ + +     + SY N I T 
Sbjct: 230 GGIKEFVQFTDQNRINLLKEPIYLYGERDSTI---VEIALQYNDSYQENVFSYVNNINTH 286

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQT 383
           EGGTH +G R ALTR +  YA+     + +   +  DD       ++SV + EP+F GQT
Sbjct: 287 EGGTHVTGFRKALTRTLNAYAQKNDLLKNLKLSLTGDDFKEGLTAVISVKVAEPQFEGQT 346

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKT 442
           KTKL + + Q  VE  + +    +   NP     ++E V   +  R   RK +E   RK+
Sbjct: 347 KTKLGNSETQSIVETIVNEQLAEFAESNPNVLKMIIEKVKGAAMSREAARKAKELTRRKS 406

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
            +    LPGKLADCS N     EL+IVEGDSAGGSAKQ R+RS QA+LPL+GKILNV  A
Sbjct: 407 VLESSGLPGKLADCSINDPEHCELYIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKA 466

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
              K+  N++I  ++ ALG     +    E LRY K+IIMTDADVDGAHI +LLLTFF++
Sbjct: 467 RLHKMLENEEIKTIILALGTSFGEEEFSTEKLRYGKIIIMTDADVDGAHIRTLLLTFFFR 526

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKK--HGKGKIEISRFKG 619
            M  LIE   +F+  PPL+ +  G +  YA D++ +  I E  KK   GK  I I R+KG
Sbjct: 527 HMRSLIEAGRVFIAQPPLYLVKSGKEQQYAWDDDERNSITESMKKMQKGKANIHIQRYKG 586

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679
           LGEM   QL  T MD   R+LL V +   +    +     + LMG K + R +FI++ A 
Sbjct: 587 LGEMNPEQLWSTTMDPAHRSLLLVNVENAM----EADQVFSTLMGDKVEPRREFIEKNAR 642

Query: 680 FIDDVG 685
           ++  + 
Sbjct: 643 YVRRLD 648


>gi|293556775|ref|ZP_06675338.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E1039]
 gi|291601107|gb|EFF31396.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E1039]
          Length = 692

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 249/657 (37%), Positives = 360/657 (54%), Gaps = 33/657 (5%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +  ++ Y+ SSI++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DE ++GY + 
Sbjct: 13  AKKVNNEYNDSSIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGSE 72

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+V++  +  +TV D+GRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHG
Sbjct: 73  IDVTIHEDNSITVADSGRGMPVGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHG 130

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           VG SVVNALS  L VT+ R    + QKF  G  P   L+K  K +   GT + F PD  I
Sbjct: 131 VGASVVNALSKWLTVTIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTTVHFLPDDTI 190

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     F    L +  +  A+L   VK   S  +        P KE F++  G+K ++  
Sbjct: 191 FSTT-KFSYEILAERLRESAFLLKGVKISLSDLR-----GEEPVKEIFHYEEGIKEFVDY 244

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
             E +  ++  +     EK+G     VE A  + +   E   S+ N + T +GGTHE+G+
Sbjct: 245 LNEEKDTLTPVV-YFSGEKEGI---EVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGM 300

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390
           + A+T+   +YA       +R  ++   D       +LS+ + E   +F GQTK KL + 
Sbjct: 301 KAAMTKSYNEYARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTP 360

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---L 447
            A+  V+N + +    YL +N   +  L+   I+  E R   RK RE +R    RK    
Sbjct: 361 VARTVVDNVISEQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGES 420

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            L GKL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I
Sbjct: 421 LLSGKLTPAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDI 480

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N++I  ++  +G     ++  ED  Y+KVIIMTDAD DGAHI  LLLTFFY+ M  LI
Sbjct: 481 LKNEEINTMIYTIGAGVGPEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLI 540

Query: 568 EQKHLFLISPPLFRITQG---TKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
           E   +++  PPL+++++G    + + YA  ++    ++++  K       + R+KGLGEM
Sbjct: 541 EAGKVYIALPPLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGK----GYMLQRYKGLGEM 596

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            A QL ET MD   RTL+RV I+         +  +  LMG K + R K+I+    F
Sbjct: 597 NAEQLWETTMDPTSRTLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIENHVQF 649


>gi|227533501|ref|ZP_03963550.1| DNA gyrase, B subunit [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227188830|gb|EEI68897.1| DNA gyrase, B subunit [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 653

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 261/667 (39%), Positives = 374/667 (56%), Gaps = 22/667 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86
            +  ++        +  YDAS I++L GLE VR RPGMYIG T  + LHHL  E+IDN +
Sbjct: 2   TDKKETAEEKKDELAAEYDASQIQVLSGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNGI 61

Query: 87  DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146
           DE +AG+A  IEV ++ +  +TV D+GRGIPV+   K   +  LE + T LHAGGKF   
Sbjct: 62  DEALAGFATRIEVEVNPDNSVTVTDDGRGIPVDIQSK-TGRPALETVYTVLHAGGKFGGG 120

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGT 205
            Y++SGGLHGVG SVVNALS +L VTV R    +   F RG   +P++          GT
Sbjct: 121 GYKVSGGLHGVGASVVNALSTDLDVTVTRGGKRYYIDFIRGKVNTPMKVIGTAPEHEHGT 180

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           ++ F PDP IF +   FD   L    +  A+L+  +K  ++  +         EK  F++
Sbjct: 181 KVHFLPDPDIFTEIRTFDDKILTTRIRELAFLNKGLKLTFTDKR-----AATHEKLVFHY 235

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILT 324
            GGLK+Y+    E +  +  E    + + KG    TVE+A+ +  +      ++ N I T
Sbjct: 236 EGGLKSYVDFLTEKKENLLQEPIYVEGQDKGI---TVEFALQYTNDYHSTLLTFANNIHT 292

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQ 382
            EGGTHE+G + ALTR I  YA  +   +        DD+      ++SV   +P+F GQ
Sbjct: 293 YEGGTHETGFKTALTRVINDYARRSGALKDSDDPLSGDDVREGLTAVVSVKHPDPQFEGQ 352

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TKTKL + DA+  V+    D F+ +L+++P +   +++  +  S+ RL  ++ RE   +K
Sbjct: 353 TKTKLGNSDARTVVDRTFSDHFNKFLMEHPADGKLIIDKAMLASKARLAAKRAREVTRKK 412

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    LPGKLAD +      +ELFIVEGDSAGGSAK  R+R  QA+LP+RGKILNV  
Sbjct: 413 SGLEISNLPGKLADNTSKDPEISELFIVEGDSAGGSAKSGRSRLTQAILPIRGKILNVEK 472

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
           A  E+I  N++I  L  A+G      +     RY K+IIMTDADVDGAHI +LLLT  Y+
Sbjct: 473 ASMERILANEEIRTLFTAMGTGFGQDFDINKARYHKLIIMTDADVDGAHIRTLLLTLIYR 532

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
            M  +++  ++++  PPL+R+ QG  + Y   +E  Q IL +       K EI R+KGLG
Sbjct: 533 YMRPVLDAGYVYIAQPPLYRLRQGKMTQYIDSDEELQDILGQLPPS--PKPEIQRYKGLG 590

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           EM A+QL ET MD + R LLRV         +        LMG   + R KFI++ A F+
Sbjct: 591 EMDANQLWETTMDPDNRRLLRVS----PKDAEAADGVFEMLMGDHVEPRRKFIEDNAVFV 646

Query: 682 D--DVGT 686
           D  ++  
Sbjct: 647 DPNNIDA 653


>gi|289596495|ref|YP_003483191.1| DNA gyrase, B subunit [Aciduliprofundum boonei T469]
 gi|289534282|gb|ADD08629.1| DNA gyrase, B subunit [Aciduliprofundum boonei T469]
          Length = 644

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 260/661 (39%), Positives = 371/661 (56%), Gaps = 40/661 (6%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YDA +I+ILE  + VR RPGMYIG TDE+ LHHL  EV+DN++DE +AGY + I V +  
Sbjct: 4   YDAKAIQILEDAQAVRKRPGMYIGSTDERGLHHLIYEVVDNSIDEALAGYCSRINVIIHK 63

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G ++V D+GRGIPV+ HP+   KS LE+++T LHAG KFD   Y I+GGLHGVGI VVN
Sbjct: 64  DGSVSVEDDGRGIPVDMHPE-KGKSALEVVMTVLHAGAKFDKKAYRITGGLHGVGIHVVN 122

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR----------------GTRI 207
            LS+ L   + R   I+ Q + RG P   +    K+ N                  GT I
Sbjct: 123 FLSEWLKAYIKRDGKIYFQWYERGKPQCDVHVVGKIENGNFVWIEDGHDEKFKYSRGTYI 182

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PD +IF     F  + + K  +  A+L+  ++     ++         +KE F + G
Sbjct: 183 RFKPDAEIFETT-EFKYSIVKKKLRDLAFLNRGIEITLEDERS-------GKKEVFKYDG 234

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDE 326
           G+  +++   E  + I  ++  GK E+ G     VE+A+ + +   E   ++ NTI T E
Sbjct: 235 GIVEFVKFLNEGYNPIHRDVVYGKDEQDGII---VEFAMQYNDSTSENLLAFVNTIHTVE 291

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKRAISII-SDDLMISAVGILSVFIREPEFAGQTKT 385
           GGTH SG R ALT+ I  +A+     + I  +  +D+      ++ V    P+F GQTK 
Sbjct: 292 GGTHVSGFRSALTKVINDFAKSRNLLKGIDSLQGEDVREGLTAVIHVKHPNPQFEGQTKA 351

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-I 444
           KL + + +  V + +      Y  ++P  AT ++   I  +  R+  RK RE+ R+   +
Sbjct: 352 KLGNSEVKGVVFSIVNKILSTYFEEHPDVATNIVSKAIAAARARIAARKARELARRKGYL 411

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
             L LPGKLADCS+      ELFIVEGDSAGGSAKQAR+R  QA+LPLRGKILNV  A  
Sbjct: 412 ESLDLPGKLADCSEEDPERAELFIVEGDSAGGSAKQARDRHFQAILPLRGKILNVEKARI 471

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           +K+  N +I  L+ A+G   R  +    LRY K+IIMTDADVDGAHI +LLLTFFY+ M 
Sbjct: 472 DKVFKNNEIRALISAIGTGVREDFDYSKLRYGKIIIMTDADVDGAHIRTLLLTFFYRYMP 531

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
           +LIE+ H+++   PL+RI +G    Y + +E      +E K    G   + RFKGLGEM 
Sbjct: 532 ELIEKGHIYIAQAPLYRIQKGKNIYYVYSDE-----EKEEKLRELGNASVQRFKGLGEMN 586

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
             QL +T M+   R L+RV I        +     + LMG +   R +FI + A  + ++
Sbjct: 587 PQQLWDTTMNPETRRLIRVTIED----AAEADRLFSILMGEQVGPRREFIIQHAKEVMNI 642

Query: 685 G 685
            
Sbjct: 643 D 643


>gi|115524952|ref|YP_781863.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris BisA53]
 gi|115518899|gb|ABJ06883.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris BisA53]
          Length = 685

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 379/656 (57%), Positives = 490/656 (74%), Gaps = 9/656 (1%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
               S + +Y A+ I +LEGLEPVR RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+A
Sbjct: 33  GRRASEAGDYTAADIEVLEGLEPVRRRPGMYIGGTDEKALHHLFAEVIDNSMDEALAGHA 92

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + IEV L  +GFLTV DNGRGIPV+ HPKFP KS LE+I+ TLH+GGKFD+  YE SGGL
Sbjct: 93  DFIEVELSADGFLTVTDNGRGIPVDPHPKFPKKSALEVIMCTLHSGGKFDSKVYETSGGL 152

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS  L V VAR   ++   F RG P   LE   KV N+RGTRI F+PD +
Sbjct: 153 HGVGVSVVNALSSLLEVEVARGQQLYKMTFERGHPKGKLEDLGKVHNRRGTRIRFKPDTE 212

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-YGIPEKEEFYFPGGLKTYL 273
           IFG KA F   RL KM +SKAYL G V   W CD E+ +    +P ++ F+FPGGLK +L
Sbjct: 213 IFGAKAAFKPQRLFKMARSKAYLFGGVVIRWKCDPELLKGLEDVPSEDSFHFPGGLKDFL 272

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHES 332
              + N +L+  +IF+GK+ + G H G  EWA+AW  + +  ++SYCNT+ T +GGTHES
Sbjct: 273 GAAIHNDTLVHPDIFSGKSGRNGAH-GACEWAVAWTADADGFLSSYCNTVPTPDGGTHES 331

Query: 333 GLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           G+R AL RG+K +AE     KRA S+ S+D+M+ A  +LSVF+REPEF GQTK +L + +
Sbjct: 332 GMRSALLRGLKDHAERVGQGKRASSVTSEDVMVGAAVMLSVFVREPEFQGQTKDRLATAE 391

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           AQ+ VE A++DPFDH+L  NP +A KLLE++IER++ERLRRR ++E++RKTA++KLRLPG
Sbjct: 392 AQKIVEQAIKDPFDHWLSGNPAQANKLLEFIIERADERLRRRAEKEISRKTAVKKLRLPG 451

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC+   A G+ELFIVEGDSAGGSAKQ R+R  QA+LPLRGKILNVASAG +K+  N 
Sbjct: 452 KLADCTNTAAEGSELFIVEGDSAGGSAKQGRDRKTQAILPLRGKILNVASAGKDKVVANA 511

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           Q+ DL+QALGC T + YRE+DLRY ++IIMTDADVDGAHIASLL+TFFY++M  LI+  H
Sbjct: 512 QLSDLIQALGCGTGANYREDDLRYARIIIMTDADVDGAHIASLLITFFYRQMPKLIDDGH 571

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           L+L  PPL+R+T G K+VYA D+ HK+++L++ + +   K+++ RFKGLGEM+ +QLKET
Sbjct: 572 LYLAVPPLYRLTHGAKTVYARDDAHKEELLKK-EFNANAKVDVGRFKGLGEMMPAQLKET 630

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD--VG 685
            MD  KRTLLRV +       + T DS+ +LMGTKA+ RF FI ++A F  D  + 
Sbjct: 631 TMDPAKRTLLRVNLADI--DREGTADSVERLMGTKAEARFAFISDKAEFASDEMLD 684


>gi|297588052|ref|ZP_06946696.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Finegoldia magna
           ATCC 53516]
 gi|297574741|gb|EFH93461.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Finegoldia magna
           ATCC 53516]
          Length = 638

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 256/653 (39%), Positives = 384/653 (58%), Gaps = 21/653 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
             +  Y A  I +LEGLEPVR+RPGMYIG TDEK LHHL  EV+DN++DE +AG  +LI+
Sbjct: 2   KKNREYTADQITVLEGLEPVRVRPGMYIGSTDEKGLHHLVYEVVDNSIDEALAGVCDLIK 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +  + V D+G GIPVE HPK   KSTLE +LT LHAGGKF N  Y+ SGGLHGVG
Sbjct: 62  VTIKKDNSVIVEDDGSGIPVETHPK-TGKSTLETVLTVLHAGGKFSNDAYQYSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +S VNALS  L   V R   ++ Q+F +G  ++ L   ++     GT I F PD  IF  
Sbjct: 121 VSCVNALSTYLIARVKRDGKMYEQRFEKGKTVTELTVIKENVRGTGTTIEFMPDNTIFET 180

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              FD   L K  +  A+L+  VK  ++ ++E         KE F++ GG+K++++   +
Sbjct: 181 LN-FDKNVLAKRFREMAFLNKGVKIEFADERE-------GYKELFHYEGGIKSFVEYINK 232

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           ++  +  E+   + EK  T    VE A+ + E     I S+ N I T +GGTH  G + A
Sbjct: 233 SKKPLDHEVMYIEGEKDTT---KVEIAMQYTESYNETIVSFTNNIKTVDGGTHVVGFKSA 289

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  YA       ++  ++  DD+      ++SV +  P+F GQTK KL + +A+  
Sbjct: 290 LTRALNDYARNKNILKEKDDNLSGDDVREGITAVVSVKLNNPQFEGQTKGKLGNSEARTV 349

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454
           V++ + +    Y  +NP     +++  +   + RL  R+ R+ V +K+ +    LPGKLA
Sbjct: 350 VDSVVYEHLSFYFEENPKIVKTIIQKALASQKARLAARRARDLVRKKSVLDNTTLPGKLA 409

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC  +     E+F+VEGDSAGGSAK  R+   QA+LPLRGKILNV  A  E++ N+ +I 
Sbjct: 410 DCQSSDIEHNEIFLVEGDSAGGSAKGGRDNKFQAILPLRGKILNVEKAHLERVLNSNEIK 469

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++ A G      +    LRY K++IMTDADVDGAHI +LLLTF Y+ M  L+E+ H+++
Sbjct: 470 AMITAFGTGIGKNFDISKLRYGKIVIMTDADVDGAHIRTLLLTFLYRFMKPLVEKGHVYI 529

Query: 575 ISPPLFRITQGTKS-VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
             PPL+ I +G K   Y + E+  ++ LE++ +  +  I++ R+KGLGEM A QL +T M
Sbjct: 530 AQPPLYGIIKGVKVMEYCYTEKELEEALEKYGE--RSNIKVQRYKGLGEMNAEQLWDTTM 587

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           +   R L++VEI+       +  ++ + LMG   + R +FI++ A +  ++  
Sbjct: 588 NPEHRILIKVEIDG--EDENELDNTFDVLMGDNVEPRREFIEQNAVYAQNIDA 638


>gi|154253688|ref|YP_001414512.1| DNA topoisomerase IV subunit B [Parvibaculum lavamentivorans DS-1]
 gi|154157638|gb|ABS64855.1| DNA topoisomerase IV, B subunit [Parvibaculum lavamentivorans DS-1]
          Length = 679

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 386/686 (56%), Positives = 501/686 (73%), Gaps = 18/686 (2%)

Query: 2   TDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMR 61
           +DD+ DLF+  P  ++ +        +               Y A  I +LEGLEPVR R
Sbjct: 9   SDDTDDLFAAAPKAAKPARAPKGAPRD------------DGTYSAKDIEVLEGLEPVRRR 56

Query: 62  PGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENH 121
           PGMYIGGTDEKALHHLF+EV+DN+MDE +AG+AN IEV++  +G LTV DNGRGIPV+ H
Sbjct: 57  PGMYIGGTDEKALHHLFAEVLDNSMDEAVAGHANWIEVTVSEDGSLTVADNGRGIPVDPH 116

Query: 122 PKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFS 181
           PKF NKS LE+ILTTLH+GGKF    YE SGGLHGVG+SVVNALSD   V VAR  T+++
Sbjct: 117 PKFKNKSALEVILTTLHSGGKFGGKAYETSGGLHGVGVSVVNALSDRFEVEVARDQTLYT 176

Query: 182 QKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241
           Q ++RG+P + L  K + +N+RGT+ITF PD  IFG  A F   RL KM +SKAYL G V
Sbjct: 177 QSYARGVPTTKLTDKGRTQNRRGTKITFHPDADIFGKGAHFIPKRLYKMARSKAYLFGGV 236

Query: 242 KTCWSCDKE-IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
           +  W+C    I EK   P  +  +FPGGL  YL+  +     +++E FTGK  + G+H G
Sbjct: 237 EIRWNCAPSLIGEKDDTPVNDVLHFPGGLVDYLKASINGYDTVTAEPFTGKVSRAGSH-G 295

Query: 301 TVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359
           +VEWAIAW         SYCNT+ T EGGTHE+GLR ALT+G+K YA++  NK+A  I +
Sbjct: 296 SVEWAIAWFGGGDGFLNSYCNTVPTAEGGTHEAGLRAALTKGLKAYADMVGNKKAAQIQA 355

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           +D++ +A  +LSVFIREPEF GQTK KL S +AQR VE A+ D FDH+L   P +A KLL
Sbjct: 356 EDVLGTAGAMLSVFIREPEFQGQTKEKLASAEAQRLVERAIGDHFDHWLTAAPQQANKLL 415

Query: 420 EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +WVI+R+++RLRRR++++V RK+A RKLRLPGKLADCSQ+ A G+E+F+VEGDSAGGSAK
Sbjct: 416 DWVIDRADDRLRRRQEKDVARKSATRKLRLPGKLADCSQSAADGSEIFLVEGDSAGGSAK 475

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
           QAR+R++QA+LPLRGKILNVASA   K+  +QQI DL+QALG RT S YR+ DLRY+KVI
Sbjct: 476 QARDRASQAILPLRGKILNVASASGAKLAQSQQISDLIQALGVRTGSHYRQADLRYDKVI 535

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599
           IMTDADVDGAHIASLL+TFFY+E+ +LI + HL++  PPL+++TQG K++YA D+ HK +
Sbjct: 536 IMTDADVDGAHIASLLITFFYRELPELIREGHLYMAVPPLYKLTQGGKTLYARDDAHKDE 595

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
           +L+  +  G+GK+EISRFKGLGEM+ +QLKET M   KRTL+RV + +     K+T  +I
Sbjct: 596 LLKA-EFSGRGKVEISRFKGLGEMMPAQLKETTMARGKRTLMRVVVPEAE--AKETSGAI 652

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
            +LMG K + RF+FIQE A+F  D+ 
Sbjct: 653 ERLMGNKPELRFQFIQEHAAFAHDLD 678


>gi|315027216|gb|EFT39148.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX2137]
          Length = 685

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 242/657 (36%), Positives = 361/657 (54%), Gaps = 33/657 (5%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +  ++ Y+ +SI++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DE ++GY N 
Sbjct: 2   AKKINNEYNDASIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGNE 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V++  +  + V D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHG
Sbjct: 62  INVTIQKDNSICVADSGRGMPTGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHG 119

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           VG SVVNALS  L V + R    + ++F  G  P+  L+K  K + + GT +TF PD  I
Sbjct: 120 VGASVVNALSKWLEVHIVRDGVEYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDDTI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     F    L +  +  A+L   VK   + ++        P++E F++  G+K ++  
Sbjct: 180 FSTTN-FSYEILAERLRESAFLLKGVKITLTDER-----GEEPKEEVFHYEEGIKEFVAY 233

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
             E +  ++  +      K+G     VE A  + +   E   S+ N + T +GGTHE G+
Sbjct: 234 LNEEKDTLTPVV-YFSGAKEGI---EVELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGM 289

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390
           + ++T+   +YA       ++  ++   D       +LS+ + E   +F GQTK KL + 
Sbjct: 290 KTSMTKAYNEYARKVGLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTP 349

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---L 447
            A+  V+N + +    YL +N   +  L+   I+  E R   RK RE +R    RK    
Sbjct: 350 LARTVVDNVVGEQMGFYLQENSEMSQSLIRKAIKAREAREAARKAREESRNGKKRKKGES 409

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            L GKL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I
Sbjct: 410 LLSGKLTPAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDI 469

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N++I  ++  +G     ++  ED  Y+K+IIMTDAD DGAHI  LLLTFFY+ M  LI
Sbjct: 470 LKNEEINTMIYTIGAGVGPEFSIEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLI 529

Query: 568 EQKHLFLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
           E   +++  PPL+++++G   KSV  YA  +    +++++  K       + R+KGLGEM
Sbjct: 530 EAGKVYIALPPLYKVSKGTGKKSVIEYAWTDGELAEVIDKVGK----GYMLQRYKGLGEM 585

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            A QL ET MD   RTL+RV I+         +  +  LMG K + R K+I++   F
Sbjct: 586 NAEQLWETTMDPETRTLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIEQHVQF 638


>gi|293570285|ref|ZP_06681354.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E980]
 gi|291609692|gb|EFF38953.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E980]
          Length = 692

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 249/657 (37%), Positives = 360/657 (54%), Gaps = 33/657 (5%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +  ++ Y+ SSI++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DE ++GY + 
Sbjct: 13  AKKVNNEYNDSSIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGSE 72

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+V++  +  +TV D+GRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHG
Sbjct: 73  IDVTIHEDNSITVADSGRGMPVGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHG 130

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           VG SVVNALS  L VT+ R    + QKF  G  P   L+K  K +   GT + F PD  I
Sbjct: 131 VGASVVNALSKWLTVTIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTIVHFLPDDTI 190

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     F    L +  +  A+L   VK   S  +        P KE F++  G+K ++  
Sbjct: 191 FSTT-KFSYEILAERLRESAFLLKGVKISLSDLR-----GEEPVKEVFHYEEGIKEFVDY 244

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
             E +  ++  +     EK+G     VE A  + +   E   S+ N + T +GGTHE+G+
Sbjct: 245 LNEEKDTLTPVV-YFSGEKEGI---EVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGM 300

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390
           + A+T+   +YA       +R  ++   D       +LS+ + E   +F GQTK KL + 
Sbjct: 301 KAAMTKSYNEYARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTP 360

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---L 447
            A+  V+N + +    YL +N   +  L+   I+  E R   RK RE +R    RK    
Sbjct: 361 VARTVVDNVISEQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGES 420

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            L GKL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I
Sbjct: 421 LLSGKLTPAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDI 480

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N++I  ++  +G     ++  ED  Y+KVIIMTDAD DGAHI  LLLTFFY+ M  LI
Sbjct: 481 LKNEEINTMIYTIGAGVGPEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLI 540

Query: 568 EQKHLFLISPPLFRITQG---TKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
           E   +++  PPL+++++G    + + YA  ++    ++++  K       + R+KGLGEM
Sbjct: 541 EAGKVYIALPPLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGK----GYMLQRYKGLGEM 596

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            A QL ET MD   RTL+RV I+         +  +  LMG K + R K+I+    F
Sbjct: 597 NAEQLWETTMDPTSRTLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIENHVQF 649


>gi|116493579|ref|YP_805313.1| DNA gyrase, B subunit [Lactobacillus casei ATCC 334]
 gi|116103729|gb|ABJ68871.1| DNA gyrase subunit B [Lactobacillus casei ATCC 334]
          Length = 653

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 261/667 (39%), Positives = 372/667 (55%), Gaps = 22/667 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86
            +  ++        +  YDAS I++L GLE VR RPGMYIG T  + LHHL  E+IDN +
Sbjct: 2   TDKKETAEEKKDELAAEYDASQIQVLSGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNGI 61

Query: 87  DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146
           DE +AG+A  IEV ++ +  +TV D+GRGIPV+   K   +  LE + T LHAGGKF   
Sbjct: 62  DEALAGFATRIEVEVNPDNSVTVTDDGRGIPVDIQSK-TGRPALETVYTVLHAGGKFGGG 120

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGT 205
            Y++SGGLHGVG SVVNALS +L VTV R    +   F RG    P++          GT
Sbjct: 121 GYKVSGGLHGVGASVVNALSTDLDVTVTRGGKRYYIDFIRGKVNMPMKVIGTAPEHEHGT 180

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           ++ F PDP IF +   FD   L    +  A+L+  +K  ++  +         EK  F++
Sbjct: 181 KVHFLPDPDIFTEIRTFDDKILTTRIRELAFLNKGLKLTFTDKR-----AATHEKLVFHY 235

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILT 324
            GGLK+Y+    E +  +  E    + + KG    TVE A+ +  +      ++ N I T
Sbjct: 236 EGGLKSYVDFLTEKKENLLQEPIYVEGQDKGI---TVEVALQYTNDYHSTLLTFANNIHT 292

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQ 382
            EGGTHE+G + ALTR I  YA  +   +        DD+      ++SV   +P+F GQ
Sbjct: 293 YEGGTHETGFKTALTRVINDYARRSGALKDSDDPLSGDDVREGLTAVVSVKHPDPQFEGQ 352

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TKTKL + DA+  V+    D F+ +L+++P +   +++  +  S+ RL  ++ RE   +K
Sbjct: 353 TKTKLGNSDARTVVDRTFSDHFNKFLMEHPADGKLIIDKAMLASKARLAAKRAREVTRKK 412

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    LPGKLAD +      +ELFIVEGDSAGGSAK  R+R  QA+LP+RGKILNV  
Sbjct: 413 SGLEISNLPGKLADNTSKDPEISELFIVEGDSAGGSAKSGRSRLTQAILPIRGKILNVEK 472

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
           A  E+I  N++I  L  A+G      +     RY K+IIMTDADVDGAHI +LLLT  Y+
Sbjct: 473 ASMERILANEEIRTLFTAMGTGFGQDFDINKARYHKLIIMTDADVDGAHIRTLLLTLIYR 532

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
            M  +++  ++++  PPL+R+ QG  + Y   +E  Q IL +       K EI R+KGLG
Sbjct: 533 YMRPVLDAGYVYIAQPPLYRLRQGKMTQYIDSDEELQDILGQLPPS--PKPEIQRYKGLG 590

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           EM A+QL ET MD + R LLRV         +        LMG   + R KFI++ A F+
Sbjct: 591 EMDANQLWETTMDPDNRRLLRVS----PKDAEAADGVFEMLMGDHVEPRRKFIEDNAVFV 646

Query: 682 D--DVGT 686
           D  ++  
Sbjct: 647 DPNNIDA 653


>gi|260890953|ref|ZP_05902216.1| DNA gyrase, B subunit [Leptotrichia hofstadii F0254]
 gi|260859506|gb|EEX74006.1| DNA gyrase, B subunit [Leptotrichia hofstadii F0254]
          Length = 660

 Score =  611 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 264/669 (39%), Positives = 373/669 (55%), Gaps = 37/669 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY A +I +LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AG  + I V +
Sbjct: 3   NNYGAEAITVLEGLEAVRKRPGMYIGSTSARGLHHLVWEIVDNSVDEALAGICDKITVKI 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
                + V DNGRGIPV  H     KSTLE++LT LHAGGKFDN  Y++SGGLHGVG+SV
Sbjct: 63  LEGNIIEVSDNGRGIPVGMHK--TGKSTLEVVLTVLHAGGKFDNDNYKVSGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR-GTRITFRPDPKIFGDKA 220
           VNALS+ L  TV R   IF Q + RG+P SP+E+     +   GT + F+ D +IF    
Sbjct: 121 VNALSEWLEATVTRDGKIFRQTYERGVPTSPVEEIGVADDGTHGTVVRFKADDEIFETTV 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +D + L    +  AYL+  +K   + ++         + EEF F GG+K +L   ++  
Sbjct: 181 -YDYSVLESRLKELAYLNKGLKIELADER----NAENVKAEEFLFEGGIKDFLNEIIDEE 235

Query: 281 -----------SLISSEIFTGKTEKK---------GTHRGTVEWAIAWCEEN-PEITSYC 319
                      ++   E    + E +         G     VE A+ +       + S+ 
Sbjct: 236 KIIDDVIYMADTMQIEEAKEVEAEDENGNTVIKQRGAKFVEVEIAMNYTTSQRETVYSFV 295

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREP 377
           N I T EGGTH SG R ALTR I   A+     +  +      D+    V ++SV I EP
Sbjct: 296 NNINTHEGGTHVSGFRTALTRTINDIAKQMNLIKDKNGTFQGTDVREGLVCVISVKIPEP 355

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F GQTKTKL + +    V N +      YL  +P  A K++E +      R   +K RE
Sbjct: 356 QFEGQTKTKLGNSEVTGIVSNIVGSNLKFYLEDHPKAAEKIIEKMAMSKRAREAAKKARE 415

Query: 438 VN-RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
           +  RK  +    LPGKLADCS      +E+FIVEG+SAGGSAKQ R+R  QA+LPLRGKI
Sbjct: 416 LVLRKNTLEVGSLPGKLADCSSKDPAESEIFIVEGNSAGGSAKQGRDRRFQAILPLRGKI 475

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556
           LNV  +G  K   N +I  ++ A G     +   + LRY K++IMTDADVDGAHI +L+L
Sbjct: 476 LNVEKSGVHKALENAEIRAMITAFGAGFGEEMDLKKLRYHKIVIMTDADVDGAHIRTLML 535

Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616
           TFFY+ + +LI + ++++  PPL++I  G    YA+ ++  +++    +  G+ K  I R
Sbjct: 536 TFFYRHLRELINEGYIYIAQPPLYKIQAGKAIRYAYSDDQMKQVTRVLEGEGR-KYTIQR 594

Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           +KGLGEM   QL ET +D   RTLL+V +              N LMG K + R KFI++
Sbjct: 595 YKGLGEMNPEQLWETTLDPEVRTLLKVSMED----ASYADKMFNILMGDKVEPRRKFIED 650

Query: 677 RASFIDDVG 685
            A+++ ++ 
Sbjct: 651 NANYVRNLD 659


>gi|197105032|ref|YP_002130409.1| topoisomerase IV, subunit B [Phenylobacterium zucineum HLK1]
 gi|196478452|gb|ACG77980.1| topoisomerase IV, subunit B [Phenylobacterium zucineum HLK1]
          Length = 684

 Score =  611 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 369/691 (53%), Positives = 469/691 (67%), Gaps = 14/691 (2%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           M+  S    S        +          P          +  Y A+ I +LEGLEPVR 
Sbjct: 1   MSPKSTAQASLFDEALNPAPAAPLAESHEPRPDPAVVGVKTSGYSAADIEVLEGLEPVRK 60

Query: 61  RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           RPGMYIGGTDE+ALHHLF+EV+DNAMDE +AG+A +IEVSLD +G LTV D+GRGIPV+ 
Sbjct: 61  RPGMYIGGTDERALHHLFAEVLDNAMDEAVAGHAKVIEVSLDADGALTVRDDGRGIPVDP 120

Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
           HPK P KS LE+I+T LH+GGKF    YE SGGLHGVG+SVVNALS+ + VTV +    +
Sbjct: 121 HPKHPGKSALEVIMTVLHSGGKFSGKAYETSGGLHGVGVSVVNALSERVEVTVFKDGFEW 180

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
            Q F+RG PL  +EK    R  +GT I+F PDP IFGD A F  ARL +M +SKAYL G 
Sbjct: 181 RQAFTRGKPLGGIEKIGPTRK-KGTAISFLPDPVIFGDGAAFKPARLYRMARSKAYLFGG 239

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
           V+  W CD         P +  F FP GL  +L  +++    ++ E FTG+ E+ G   G
Sbjct: 240 VEIRWKCDPARIHD-QTPAEAVFRFPNGLADFLAERIKGLETVTPEPFTGRYERPGEA-G 297

Query: 301 TVEWAIAWC-----EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI 355
            VEWAIAW      E +  + SYCNT+ T EGGTHESGLR ALT+G+K+YAEL   KR  
Sbjct: 298 KVEWAIAWTPAGFGEADSFMQSYCNTVPTPEGGTHESGLRAALTKGLKQYAELVGEKRGG 357

Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415
            I +DD++  A  ++SVFIR+PEF GQTK KL S +AQR VE AL DPFDH+L   P  A
Sbjct: 358 LITADDVVAQAGALVSVFIRDPEFQGQTKEKLSSTEAQRLVEKALADPFDHWLTAQPKAA 417

Query: 416 TKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
             LL++V+ER+EERL+RR+ +EV R +A RKLRLPGKLADC+ N   G ELF+VEGDSAG
Sbjct: 418 GALLQFVVERAEERLKRRRDKEVARASATRKLRLPGKLADCAGNAIDGAELFLVEGDSAG 477

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           GSAKQAR+R NQA+LPLRGKILNVASA ++K   N+++ DL+ ALG +  S+++E+DLRY
Sbjct: 478 GSAKQARDRKNQAILPLRGKILNVASASTDKFGGNKELSDLLLALGVQPGSKFKEDDLRY 537

Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEE 595
           E++IIMTDADVDGAHIASLL+TFF++ M D+I    L+L  PPL+RI+ G K+VYA D+ 
Sbjct: 538 ERIIIMTDADVDGAHIASLLITFFFRTMPDMIRAGRLYLALPPLYRISHGGKAVYARDDA 597

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
           H+ ++L    K    K EISRFKGLGEM+ +QLKET MD   RTL RV + +   +++D 
Sbjct: 598 HRDELLATEFK--GKKPEISRFKGLGEMMPNQLKETTMDPKTRTLARVTLPRAEETVED- 654

Query: 656 QDSINKLMGTKADERFKFIQERASF-IDDVG 685
              +  LMG K + RF+FIQE A F   D+ 
Sbjct: 655 --LVEALMGRKPELRFRFIQENAEFAAADLD 683


>gi|282878003|ref|ZP_06286811.1| DNA gyrase, B subunit [Prevotella buccalis ATCC 35310]
 gi|281299838|gb|EFA92199.1| DNA gyrase, B subunit [Prevotella buccalis ATCC 35310]
          Length = 657

 Score =  611 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 264/669 (39%), Positives = 390/669 (58%), Gaps = 30/669 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
             NQ+  +NY AS+I++LEGLE VR RP MYIG   EK LHHL +E +DN++DE +AGY 
Sbjct: 2   AENQNTENNYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLINETVDNSIDEAMAGYC 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             IEV+++ +  +TV DNGRGIPV+ H K    S LE+++T LHAGGKFD  +Y++SGGL
Sbjct: 62  TDIEVTINDDESITVQDNGRGIPVDQHEKLHK-SALEVVMTVLHAGGKFDKGSYKVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+S VNALS  +   V R   I+ Q++ RG  L P++   +  N RGTR  F PD  
Sbjct: 121 HGVGVSCVNALSSHMTSQVFRDGKIYQQEYERGKALYPVKVIGET-NLRGTRQQFWPDGS 179

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     F    + +  +  A+L+  ++   +  +   E  G    E F+   GLK +++
Sbjct: 180 IFTTTH-FQWDIIARRMRELAFLNAGIRITLTDLRPNEE--GKTRTEVFHAKDGLKEFVR 236

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               +R+ +  ++   KTEK+G     +E AI +  +    I SY N I T EGGTH +G
Sbjct: 237 YVDRHRTHLFDDVIYLKTEKQGIP---IEVAIMYNTDYSENIHSYVNNINTIEGGTHLTG 293

Query: 334 LRVALTRGIKKYAEL------TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
            R ALTR +K YA+          K  I I  +D       ++S+ + EP+F GQTKTKL
Sbjct: 294 FRAALTRTLKTYADNDPVISKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKL 353

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRK 446
            + +    V+ A+ +   +YL ++P EA ++ E V+  +  R+  RK RE   RK  +  
Sbjct: 354 GNSEVSGAVQQAVGEALTNYLEEHPTEAKQICEKVVLAATARIAARKARESVQRKNVMSG 413

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADCS       E+F+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV      +
Sbjct: 414 GGLPGKLADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQWHR 473

Query: 507 IRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           +   + +M+++Q++G R         +   + LRY+K+IIMTDADVDG+HI +L++T FY
Sbjct: 474 VFEAESVMNIIQSIGVRFGVDGEDDREANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFY 533

Query: 561 QEMYDLIEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEF--KKHGKGKIEISRF 617
           + M  +IE+ HL++ +PPL++ T +   S Y + E+ +Q  ++++   +     I   R+
Sbjct: 534 RFMPKIIEEGHLYIATPPLYKCTYKNKASEYCYTEQQRQAFIDKYAQGEEDSKSIHTQRY 593

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           KGLGEM   QL ET MD   R L +V I     +  D  +  + LMG   + R +FI++ 
Sbjct: 594 KGLGEMNPEQLWETTMDPKTRLLKQVTIE----NAADADEIFSMLMGDDVEPRREFIEQN 649

Query: 678 ASFIDDVGT 686
           A++  ++  
Sbjct: 650 ATYA-NIDA 657


>gi|281491407|ref|YP_003353387.1| DNA gyrase subunit B [Lactococcus lactis subsp. lactis KF147]
 gi|281375141|gb|ADA64657.1| DNA gyrase, subunit B [Lactococcus lactis subsp. lactis KF147]
          Length = 651

 Score =  611 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 259/649 (39%), Positives = 381/649 (58%), Gaps = 23/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +D YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ IEV 
Sbjct: 12  ADEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIEVF 71

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGVG S
Sbjct: 72  IEPDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 130

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  L VTV +    + Q++ RG+    L+   +  ++RGT + F PDP+IF +  
Sbjct: 131 VVNALSTVLDVTVHKDGQKYYQEYHRGLVGDDLKIIGET-DRRGTTVHFVPDPEIFTETV 189

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD  +L    +  A+L+  ++   +  +E  EK     +  F++ GG+++Y++   EN+
Sbjct: 190 EFDFDKLATRVRELAFLNRGLRISLTDKREGNEKN----EVHFHYEGGIQSYVEYLNENK 245

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALT 339
           ++I       + E  G     VE A+ + +     + S+ N I T EGGTHE G R ALT
Sbjct: 246 TVIFEPAIFTEGEMDGI---AVEVAMQYTDTYHSVVMSFANNINTHEGGTHEQGFRTALT 302

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA+  +   +   ++  DD+      ++SV    P+F GQTKTKL + +    V 
Sbjct: 303 RVINNYAKQNKILKENEDNLTGDDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVTGIVN 362

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
               +    ++++NP  A K++E  I  S+ R+  ++ RE   +K+ +    LPGKLADC
Sbjct: 363 KLFAEALTTFMLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADC 422

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I  L
Sbjct: 423 SSNNPEQTELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSL 482

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    + Y     RY K++IMTDADVDGAHI +LLLT FY+ M  ++E  ++++  
Sbjct: 483 FTAMGTGFGADYDLSKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGYVYIAQ 542

Query: 577 PPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           PP++ I  G+++  Y       E+  Q+ L  +   G+ K  + R+KGLGEM   QL ET
Sbjct: 543 PPIYGIKVGSETKEYIQPGENQEKDLQEALARW-AQGRTKPTVQRYKGLGEMDDHQLWET 601

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            MD   R + RV +        +     + LMG + + R +FI+  A +
Sbjct: 602 TMDPEHRLMARVSVED----AAEADKIFDMLMGDRVEPRREFIENNAQY 646


>gi|288801620|ref|ZP_06407062.1| DNA gyrase, B subunit [Prevotella melaninogenica D18]
 gi|288335662|gb|EFC74095.1| DNA gyrase, B subunit [Prevotella melaninogenica D18]
          Length = 655

 Score =  611 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 264/668 (39%), Positives = 383/668 (57%), Gaps = 30/668 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
             N    +NY AS+I++LEGLE VR RP MYIG   EK LHHL +E +DN++DE +AGY 
Sbjct: 2   AENPENENNYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLINETVDNSIDEAMAGYC 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             IEV+++ +  +TV D+GRGIPV+ H K    S LE+++T LHAGGKFD  +Y++SGGL
Sbjct: 62  QNIEVTINEDNSITVEDDGRGIPVDMHEKLHK-SALEVVMTVLHAGGKFDKGSYKVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+S VNALS  +   V R   I+ Q++ +G PL P++   +  +K GTR  F PDP+
Sbjct: 121 HGVGVSCVNALSTHMKSQVFRDGKIYQQEYEKGKPLYPVKVVGET-DKTGTRQQFWPDPE 179

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     +  A + +  +  AYL+  +K   S  +   E       E F+   GLK +++
Sbjct: 180 IFTTTV-YQWAIVARRMRELAYLNAGIKITLSDLRPDPETGKT-RTEVFHAKDGLKEFVR 237

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               +R  +  ++   KTEK+      +E A+ +  +    I SY N I T EGGTH  G
Sbjct: 238 YVDRHRQHLFDDVIYLKTEKQNIP---IEVAVMYNTDYTENIHSYVNNINTIEGGTHLQG 294

Query: 334 LRVALTRGIKKYAEL------TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
            R ALTR +K YA+          K  I I  +D       ++S+ + EP+F GQTKTKL
Sbjct: 295 FRAALTRTLKTYADNDPQISKQLEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKL 354

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRK 446
            + +    V+ A+ +    YL ++P EA  +   VI  +  R+  RK RE   RK  +  
Sbjct: 355 GNSEVSGAVQQAVGEALTDYLEEHPNEAKMICNKVILAATARVAARKARESVQRKNVMSG 414

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADCS       E+F+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV      +
Sbjct: 415 GGLPGKLADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQRHR 474

Query: 507 IRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           +   + +M+++Q++G R         +   + LRY+K+IIMTDADVDG+HI +L++T FY
Sbjct: 475 VFEAESVMNIIQSIGVRFGVEGEGDFEANTDKLRYDKIIIMTDADVDGSHIDTLIMTLFY 534

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF--KKHGKGKIEISRFK 618
           + M  +IEQ HL++ +PPL++ T    S Y + E+ +Q  ++++         I   R+K
Sbjct: 535 RYMPKVIEQGHLYIATPPLYKCTYKKVSEYCYTEQQRQAFIDKYANGDEEDKAIHTQRYK 594

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           GLGEM   QL ET MD   R L +V I  D+       D  + LMG   + R +FI++ A
Sbjct: 595 GLGEMNPEQLWETTMDPKTRLLKQVTIENDV------DDIFSMLMGDDVEPRREFIEKNA 648

Query: 679 SFIDDVGT 686
           ++  ++  
Sbjct: 649 TYA-NIDA 655


>gi|206900988|ref|YP_002251257.1| DNA gyrase, B subunit [Dictyoglomus thermophilum H-6-12]
 gi|206740091|gb|ACI19149.1| DNA gyrase, B subunit [Dictyoglomus thermophilum H-6-12]
          Length = 635

 Score =  611 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 275/650 (42%), Positives = 387/650 (59%), Gaps = 22/650 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  D Y A SI+ILEG E VR RPGMYIG T  + LHHL  E++DN++DEV+AGY + I 
Sbjct: 4   TKKDKYTADSIQILEGTEAVRRRPGMYIGDTGVRGLHHLIFELVDNSIDEVMAGYCDYIL 63

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V L  +G + V DNGRGIPV+ HP+   K  LE++LTTLHAGGKF NS Y+ISGGLHGVG
Sbjct: 64  VELKKDGAVVVADNGRGIPVDIHPQA-KKPALEVVLTTLHAGGKFSNSIYKISGGLHGVG 122

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS +L V V R   IF Q + RG P++PL  K +  +K GT+I F PDP+IF  
Sbjct: 123 LSVVNALSSKLEVEVMRDGKIFYQVYERGKPITPLTVKGET-DKTGTKIKFYPDPEIFET 181

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              FD   +    +  A+L+ +V      ++             F + GGL  +++   +
Sbjct: 182 -TKFDYDIVANRLRELAFLNPKVTIELRDER-------TGRSNIFKYEGGLLEFIEYLSK 233

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
            + ++   I+  + E        +++   +   +  I SY N I T EGGTH +G R AL
Sbjct: 234 GKEVLHEPIYMEREEGNLILEIVMQYNSGY---DELILSYVNNIHTIEGGTHVTGFRTAL 290

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           TR +  +A      K   S+  DD+      I+SV + +P+F GQTKTKL + + ++ VE
Sbjct: 291 TRVVNNFARSWGLWKENESLSGDDVREGLTAIVSVKVPDPQFEGQTKTKLGNTEVRKFVE 350

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADC 456
             + +    Y  +NP     ++  +IE    R   RK RE+ R+ + +    LPGKLADC
Sbjct: 351 KVVEEELTEYFSKNPDTGKLIITKIIEAYRARQAARKARELVRRKSLLESTLLPGKLADC 410

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS-EKIRNNQQIMD 515
           S+      ELFIVEG+SAGGSAKQAR+R  QA+LPLRGKILNV  A    KI ++++I  
Sbjct: 411 SEKDPAKCELFIVEGESAGGSAKQARDRRYQAILPLRGKILNVEKAQHLTKILSSEEIKA 470

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ +LG      +    LRY K+IIMTDADVDGAHI +LLLTFFY+    LIE  ++++ 
Sbjct: 471 IIASLGTGIGQDFDLSKLRYHKIIIMTDADVDGAHIRTLLLTFFYRHFRPLIEGGYIYIA 530

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+ + +G +  YA+ EE K++IL+E+       + I R+KGLGEM   QL+ET MD 
Sbjct: 531 QPPLYLLRKGKEERYAYSEEEKEEILKEWG--YPENVYIQRYKGLGEMDPEQLRETTMDP 588

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            KR LL+V I   L    + +   + LMG   +ER  FI+++A F+ ++ 
Sbjct: 589 QKRILLQVTIEDAL----EAERLFSILMGNNVEERRNFIEQKAKFVRNLD 634


>gi|289565127|ref|ZP_06445580.1| DNA topoisomerase IV, B subunit [Enterococcus faecium D344SRF]
 gi|294614810|ref|ZP_06694705.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E1636]
 gi|294617489|ref|ZP_06697120.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E1679]
 gi|289163134|gb|EFD10981.1| DNA topoisomerase IV, B subunit [Enterococcus faecium D344SRF]
 gi|291592272|gb|EFF23886.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E1636]
 gi|291596229|gb|EFF27491.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E1679]
          Length = 692

 Score =  611 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 249/657 (37%), Positives = 361/657 (54%), Gaps = 33/657 (5%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +  ++ Y+ SSI++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DE ++GY + 
Sbjct: 13  AKKVNNEYNDSSIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGSE 72

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+V++  +  +TV D+GRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHG
Sbjct: 73  IDVTIHEDNSITVADSGRGMPVGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHG 130

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           VG SVVNALS  L VT+ R    + QKF  G  P   L+K  K +   GT + F PD  I
Sbjct: 131 VGASVVNALSKWLTVTIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTTVHFLPDDTI 190

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     F    L +  +  A+L   VK   S  +       +P KE F++  G+K ++  
Sbjct: 191 FSTT-KFSYEILAERLRESAFLLKGVKISLSDLR-----GEVPVKEIFHYEEGIKEFVDY 244

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
             E +  ++  +     EK+G     VE A  + +   E   S+ N + T +GGTHE+G+
Sbjct: 245 LNEEKDTLTPVV-YFSGEKEGI---EVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGM 300

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390
           + A+T+   +YA       +R  ++   D       +LS+ + E   +F GQTK KL + 
Sbjct: 301 KAAMTKSYNEYARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTP 360

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---L 447
            A+  V+N + +    YL +N   +  L+   I+  E R   RK RE +R    RK    
Sbjct: 361 VARTVVDNVISEQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGES 420

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            L GKL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I
Sbjct: 421 LLSGKLTPAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDI 480

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N++I  ++  +G     ++  ED  Y+KVIIMTDAD DGAHI  LLLTFFY+ M  LI
Sbjct: 481 LKNEEINTMIYTIGAGVGPEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLI 540

Query: 568 EQKHLFLISPPLFRITQG---TKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
           E   +++  PPL+++++G    + + YA  ++    ++++  K       + R+KGLGEM
Sbjct: 541 EAGKVYIALPPLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGK----GYMLQRYKGLGEM 596

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            A QL ET MD   RTL+RV I+         +  +  LMG K + R K+I+    F
Sbjct: 597 NAEQLWETTMDPTSRTLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIENHVQF 649


>gi|219851686|ref|YP_002466118.1| DNA gyrase, B subunit [Methanosphaerula palustris E1-9c]
 gi|219545945|gb|ACL16395.1| DNA gyrase, B subunit [Methanosphaerula palustris E1-9c]
          Length = 665

 Score =  611 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 250/680 (36%), Positives = 372/680 (54%), Gaps = 52/680 (7%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +++YDAS I +LEGL+PVR RP MYIG TD + LHHL  EV+DNA+DE +AG+ +LI ++
Sbjct: 2   TESYDASHITVLEGLQPVRERPAMYIGSTDTRGLHHLVYEVVDNAVDEALAGFCDLISIT 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +G  TV DNGRGIPV+   K   KS LE +LT LHAGGKFD +TY++SGGLHGVG+S
Sbjct: 62  INRDGSCTVDDNGRGIPVDKMQKN-GKSALETVLTILHAGGKFDKNTYQVSGGLHGVGVS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV--------------------- 199
           VVNALS  L   V R    +  +F++G  +SPL   ++                      
Sbjct: 121 VVNALSVSLVADVFRDGNRYRMEFAQGKVVSPLSVHKETLSELLERYRRRYRSEPPREVE 180

Query: 200 ----------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
                         GT ITF+PD  IF     FD   L+   +  A+L+  +    +  +
Sbjct: 181 TKEALFADEGAKLSGTIITFQPDDSIFET-VTFDYDVLVHRLREMAFLNRGITIRITDLR 239

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
              +         F++ GGL+ ++Q  ++ R ++  ++      K   ++  VE A+ + 
Sbjct: 240 SGDKDE-------FHYDGGLREFVQYLIDGREVLHPDVIDLS-RKDEENKLEVEVALQYT 291

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISA 366
           +     + ++ N++ T EGGTH  G R A+TR I   A      +  ++    +D+    
Sbjct: 292 QSYTETVYTFVNSVNTREGGTHLEGFRSAITRAINNSARKANLIKNNTLTLRGEDVREGL 351

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             ++S+ +  P+F GQTK +L + + +  V++ +      Y  +NP     + E     +
Sbjct: 352 TAVISIKLANPQFEGQTKMRLGNSNVRGIVDSLVYQSLSEYFEENPKSIAAIFEKATVAA 411

Query: 427 EERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
           + R   R  RE+ R+ + +    LPGKLADCS+     +E++IVEGDSAGGSAKQ RNR 
Sbjct: 412 QAREAARNARELARRKSTLESSGLPGKLADCSERDPAKSEVYIVEGDSAGGSAKQGRNRR 471

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545
            QA+LPLRGKILNV  A   K+  + +I  L+ A+G     +      RY  +++MTDAD
Sbjct: 472 FQAILPLRGKILNVEKATQHKMIKSVEIQVLISAIGAGIGDRMDANRARYHHIVLMTDAD 531

Query: 546 VDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605
           VDGAHI +LLLTFFY+ M +LIE+ ++++  PPLFRI +G +  Y + EE  Q+I  EF 
Sbjct: 532 VDGAHIQTLLLTFFYRYMPELIERGYVYIAQPPLFRIAKGKQVRYVYREEEMQQISAEF- 590

Query: 606 KHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT 665
             G   + + R+KGLGEM A QL ET M+ + R L ++ I           +   KLMG 
Sbjct: 591 --GDKGVTVQRYKGLGEMNADQLWETTMNPDTRVLKQIRIEDAGY----ANEIFEKLMGE 644

Query: 666 KADERFKFIQERASFIDDVG 685
               R  FI   A  + ++ 
Sbjct: 645 DVSARKNFILRHAKEVTNLD 664


>gi|288929798|ref|ZP_06423641.1| DNA gyrase, B subunit [Prevotella sp. oral taxon 317 str. F0108]
 gi|288328899|gb|EFC67487.1| DNA gyrase, B subunit [Prevotella sp. oral taxon 317 str. F0108]
          Length = 657

 Score =  611 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 261/668 (39%), Positives = 395/668 (59%), Gaps = 30/668 (4%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
            NQ+  +NY AS+I++LEGLE VR RP MYIG   EK LHHL +E +DN++DE +AGY +
Sbjct: 3   ENQNNENNYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLVNETVDNSIDEAMAGYCS 62

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            IEV+++ +  +TV D+GRGIPV+ H K    S LE+++T LHAGGKFD  +Y++SGGLH
Sbjct: 63  NIEVTINEDNSITVQDDGRGIPVDEHEKLHK-SALEVVMTVLHAGGKFDKGSYKVSGGLH 121

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+S VNALS  +   V R   I+ Q++  G PL P++   +  +KRGTR  F PDP I
Sbjct: 122 GVGVSCVNALSSRMLSQVFRDGKIYQQEYETGKPLYPVKVVGET-DKRGTRQQFWPDPSI 180

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     +    +    +  AYL+  VK   +  +   ++ G    E F+   GLK +++ 
Sbjct: 181 FTTTV-YRWDIIASRMRELAYLNAGVKITLTDLR--PDENGKTRTETFHAKDGLKEFVRY 237

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              +R+ +  ++   KTEK+      +E A+ +  +    I SY N I T EGGTH +G 
Sbjct: 238 VDRHRTHLFDDVIYLKTEKQNIP---IEVAVMYNTDYSENIHSYVNNINTIEGGTHLTGF 294

Query: 335 RVALTRGIKKYAEL------TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           R+ALTR +K YA+          K  I I  +D       ++S+ + EP+F GQTKTKL 
Sbjct: 295 RMALTRTLKAYADNDPVISKQIEKSKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLG 354

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKL 447
           + +    V+ A+ +   +YL ++P EA  + + VI  +  R+  RK RE  ++   +   
Sbjct: 355 NSEVSGAVQQAVGEALGYYLEEHPKEAKLICDKVILAATARIAARKARESVQRKNPMSGG 414

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADCS      +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV      K+
Sbjct: 415 GLPGKLADCSNKDPKTSEIFLVEGDSAGGSAKQGRDRYTQAILPLKGKILNVEKVQWHKV 474

Query: 508 RNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
              + +M+++Q++G R         +   + LRY+K+IIMTDADVDG+HI +L++T FY+
Sbjct: 475 FEAESVMNIIQSIGVRFGVEGEDDKEANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYR 534

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKK--HGKGKIEISRFK 618
            M  +I++ HL++ +PPL+  T   K   Y ++E+ +Q  ++++ +       I + R+K
Sbjct: 535 FMPRIIQEGHLYIATPPLYLCTYKNKVREYCYNEQQRQAFIDKYGEGQEDNKSIHVQRYK 594

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           GLGEM   QL ET MD +KR L +V I     +  D  +  + LMG   + R +FI++ A
Sbjct: 595 GLGEMNPEQLWETTMDPSKRLLKQVTI----QNAADADEIFSMLMGDDVEPRREFIEQNA 650

Query: 679 SFIDDVGT 686
           ++  ++  
Sbjct: 651 TYA-NIDA 657


>gi|148654235|ref|YP_001274440.1| DNA gyrase subunit B [Roseiflexus sp. RS-1]
 gi|148566345|gb|ABQ88490.1| DNA gyrase subunit B [Roseiflexus sp. RS-1]
          Length = 645

 Score =  611 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 252/648 (38%), Positives = 369/648 (56%), Gaps = 23/648 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YD + I++LEG+E VR RPGMYIG TD   LH +  EV+DN++DEV+AG A  +EV++  
Sbjct: 14  YDENQIQVLEGMEAVRRRPGMYIGPTDVNGLHTMVREVVDNSVDEVMAGRATTVEVTIHR 73

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G +TV D+G GIP   HPK    STL++++T LHAGGKFDN +Y++S GLHGVG+S VN
Sbjct: 74  DGSVTVADDGYGIPTGPHPKL-GVSTLQVVMTVLHAGGKFDNKSYKVSSGLHGVGVSAVN 132

Query: 164 ALSDELHVTVA--RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           ALS  + V V   R    + Q++  G+P   ++K       RGT   F PD  I      
Sbjct: 133 ALSAYMRVDVHNARDGMHYFQEYRCGVPQCEVQKVGPTTR-RGTITRFLPDTTIIQTL-D 190

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L +  +  AYL+  ++  +  +++  E         FYF GG+++Y++   ++R+
Sbjct: 191 YNFKTLAQRFREMAYLNKGLRFKFVDERDGNE-------VNFYFEGGIRSYVRHLNKDRN 243

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVALT 339
           ++  + F  +          VE A+ + E        ++ N I   +GG H +G R ALT
Sbjct: 244 VLHKQPFYVERIVDDVM---VEVALQYTESFDTDSVYAFANGINNTDGGAHVAGFRSALT 300

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA      +    ++  DD+      ++SV +R+P+F+ QTK KLVS  A   V 
Sbjct: 301 RVINAYARSKGLLKENEGNLTGDDVREGLTAVISVKLRDPQFSSQTKEKLVSPAASGAVN 360

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
               D F  +L +NP EA +++E  I  +  R+  +K RE  RK+A+    LPGKLADCS
Sbjct: 361 TVFGDAFSAWLEENPQEARRIIEKCIAAARTRIAVQKVRETARKSAMEGFSLPGKLADCS 420

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELFIVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  +  +K+ +N ++  L+
Sbjct: 421 DTNPARTELFIVEGDSAGGSAKQGRDRRYQAILPLRGKILNVEKSRLDKMLSNNEVKALI 480

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G     Q+    LRY ++I+M DADVDG+HI +LLLTFF++ M  +I   HL+L  P
Sbjct: 481 TAIGAGVGDQFDPAKLRYHRIILMCDADVDGSHIRTLLLTFFFRYMRQIITNGHLYLAQP 540

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G    Y   +  + + L       + K  I+R+KGLGEM A+QL ET M+   
Sbjct: 541 PLYRIVHGKTEKYVFTDAERDQYLATLSSSERNKATITRYKGLGEMNAAQLWETTMNPLN 600

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           R LL+V +       +   ++   LMG     R +FIQ  A  + ++ 
Sbjct: 601 RLLLQVTLED----AQQADETFTMLMGDLVPPRKRFIQTHALEVRNLD 644


>gi|67920055|ref|ZP_00513575.1| DNA gyrase, B subunit [Crocosphaera watsonii WH 8501]
 gi|67857539|gb|EAM52778.1| DNA gyrase, B subunit [Crocosphaera watsonii WH 8501]
          Length = 642

 Score =  611 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 255/653 (39%), Positives = 376/653 (57%), Gaps = 19/653 (2%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +   NY A  I++LEGL+PVR RPGMYIG T  + LHHL  EV+DN++DE +AGY   IE
Sbjct: 2   TKKSNYGAEQIQVLEGLDPVRKRPGMYIGTTGPRGLHHLVYEVVDNSIDEALAGYCTHIE 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           + ++ +G +TV DNGRGIP + HP    KS LE ++T LHAGGKF    Y++SGGLHGVG
Sbjct: 62  IDINADGSITVTDNGRGIPTDVHP-TTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           ISVVNALS+ + V V R N I +Q++ RGIPL  L+ K   ++  GT ++F PD +IF  
Sbjct: 121 ISVVNALSEWVVVNVWRDNNIHTQRYERGIPLGSLDTKPDKKHSTGTSVSFLPDIQIFSG 180

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              FD + L    +  AYL+  VK  ++  ++       P  E + + GG+K Y+     
Sbjct: 181 GIEFDYSTLAGRLKELAYLNAGVKITFTDHRK-----EEPYNETYCYEGGIKEYVTYMCR 235

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
           ++  +  +I     EK GT +  V         +  +  + N I T +GGTH  GL+  L
Sbjct: 236 DKDPLHQDIIYVSGEKNGT-QVEVALLWCVDAYSDNLLGFANNIRTIDGGTHLEGLKTVL 294

Query: 339 TRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +   A      +    ++  +++     G++SV + EPEF GQTKTKL + + +  V
Sbjct: 295 TRTMNNVARKRNKLKENDANLGGENVREGLTGVISVKVPEPEFEGQTKTKLGNTEVRGIV 354

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
           ++ + +    YL  NP  A  ++E  ++  +     R+ RE V RK+ +    LPGKLAD
Sbjct: 355 DSLVGEVLTEYLEFNPQVADNIIEKAVQAFKAAEAARRARELVRRKSVLESSPLPGKLAD 414

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS      +E+F+VEGDSAGGSAKQ R+R  QA+LPLRGKI+N+      KI  N +I  
Sbjct: 415 CSSRDPEESEIFLVEGDSAGGSAKQGRDRRFQAILPLRGKIINIEKTDDAKIYKNNEIQS 474

Query: 516 LVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALG   + +  + E LRY +++IMTDADVDGAHI +LLLTFFY+    L++Q ++++
Sbjct: 475 LITALGLGIKGEEFDSEQLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQRSLVDQGYVYI 534

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL+++ +G   +Y ++E   Q+ +     +      I RFKGLGEM+ +QL ET M+
Sbjct: 535 ACPPLYKVERGRNHMYCYNERQLQEHINSLPNNAN--YTIQRFKGLGEMMPTQLWETTMN 592

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA--SFIDDVG 685
              R++ +VEI        +       LMG +   R +FI+       + D+ 
Sbjct: 593 PETRSMKQVEIED----AAEADRIFTILMGDRVAPRREFIETYGPKLNLTDLD 641


>gi|126730950|ref|ZP_01746759.1| DNA topoisomerase IV subunit B [Sagittula stellata E-37]
 gi|126708666|gb|EBA07723.1| DNA topoisomerase IV subunit B [Sagittula stellata E-37]
          Length = 652

 Score =  611 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 347/651 (53%), Positives = 448/651 (68%), Gaps = 10/651 (1%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            +    YDASSI +LEGLEPVR RPGMYIGGTDE+ALHH+ +E++DN+MDE +AG+AN I
Sbjct: 8   TAVEPTYDASSIEVLEGLEPVRKRPGMYIGGTDERALHHMVAEILDNSMDEAVAGHANRI 67

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           EV+L  +  + + DNGRGIP++ HPKFP KS LE+IL TLHAGGKF    YE SGGLHGV
Sbjct: 68  EVTLRADHAIEIRDNGRGIPIDPHPKFPGKSALEVILCTLHAGGKFSGDAYETSGGLHGV 127

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALSD + V VA+   ++ Q+FSRGIPL P+EK     N+RGT  TF  D  IF 
Sbjct: 128 GASVVNALSDSMVVQVAKNKELYEQRFSRGIPLGPVEKVGAAPNRRGTTTTFHADEDIF- 186

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F  ARL KM +SKAYL   V+  W  + +  E    P +  F+FPGGL  YL   L
Sbjct: 187 GHHRFKPARLFKMVRSKAYLFSGVEIRWKSEIDDKE---TPTEATFHFPGGLSDYLTETL 243

Query: 278 ENRSLISSEIFTGKTEKKGTHR--GTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGL 334
              S  +   F G  + +   +  G VEWAI W    +  I SYCNT+ T EGGTHE+G 
Sbjct: 244 GTASTYADAPFGGVVDFRERFQVPGKVEWAINWTPSRDGFIQSYCNTVPTPEGGTHEAGF 303

Query: 335 RVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
             A+ +GI+ Y EL  NK+A +I  DDLM     ++S FIREPEF GQTK +L + +AQR
Sbjct: 304 WAAILKGIRAYGELVNNKKASNITRDDLMTGGCALVSCFIREPEFVGQTKDRLATTEAQR 363

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454
            VENA+RD FD++L  +   A  +L++++ R+EERLRRR+++E  RK+A +KLRLPGKL 
Sbjct: 364 LVENAVRDHFDNWLASDTKSAGAILDFLVLRAEERLRRRQEKETARKSATKKLRLPGKLT 423

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC+     GTE+FIVEGDSAGGSAK AR+R  QA+LPL+GKILNV  A S K+ +N +I 
Sbjct: 424 DCTAKSREGTEIFIVEGDSAGGSAKGARSRETQALLPLKGKILNVLGAASNKLTSNAEIR 483

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           DL +ALG    +++  +DLRYEK+IIMTDADVDGAHIASLL+TFF+ +M  LI+Q HL+L
Sbjct: 484 DLCEALGVSLGTKFNIDDLRYEKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDQGHLYL 543

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL+R+TQG K +Y  D+  K++ L +    GKGKI++ RFKGLGEM A  LKET MD
Sbjct: 544 ACPPLYRLTQGAKRLYVADDAAKEEALAK-GLGGKGKIDVQRFKGLGEMDAKDLKETTMD 602

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            N RTL+RV I++D     +T D + +LMG K + RF++IQE A F  ++ 
Sbjct: 603 PNTRTLIRVTIDEDE--PGETGDLVERLMGKKPELRFQYIQENARFAVELD 651


>gi|227551202|ref|ZP_03981251.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium TX1330]
 gi|293377175|ref|ZP_06623383.1| DNA topoisomerase IV, B subunit [Enterococcus faecium PC4.1]
 gi|227179670|gb|EEI60642.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium TX1330]
 gi|292644195|gb|EFF62297.1| DNA topoisomerase IV, B subunit [Enterococcus faecium PC4.1]
          Length = 692

 Score =  611 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 249/657 (37%), Positives = 360/657 (54%), Gaps = 33/657 (5%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +  ++ Y+ SSI++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DE ++GY + 
Sbjct: 13  AKKVNNEYNDSSIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGSE 72

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+V++  +  +TV D+GRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHG
Sbjct: 73  IDVTIHEDNSITVADSGRGMPVGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHG 130

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           VG SVVNALS  L VT+ R    + QKF  G  P   L+K  K +   GT + F PD  I
Sbjct: 131 VGASVVNALSKWLTVTIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTIVHFLPDDTI 190

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     F    L +  +  A+L   VK   S  +        P KE F++  G+K ++  
Sbjct: 191 FSTT-KFSYEILAERLRESAFLLKGVKISLSDLR-----GEEPVKEVFHYEEGIKEFVDY 244

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
             E +  ++  +     EK+G     VE A  + +   E   S+ N + T +GGTHE+G+
Sbjct: 245 LNEEKDTLTPVV-YFSGEKEGI---EVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGM 300

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390
           + A+T+   +YA       +R  ++   D       +LS+ + E   +F GQTK KL + 
Sbjct: 301 KAAMTKSYNEYARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTP 360

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---L 447
            A+  V+N + +    YL +N   +  L+   I+  E R   RK RE +R    RK    
Sbjct: 361 VARTVVDNVISEQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGES 420

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            L GKL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I
Sbjct: 421 LLSGKLTPAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDI 480

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N++I  ++  +G     ++  ED  Y+KVIIMTDAD DGAHI  LLLTFFY+ M  LI
Sbjct: 481 LKNEEINTMIYTIGAGVGPEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLI 540

Query: 568 EQKHLFLISPPLFRITQG---TKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
           E   +++  PPL+++++G    + + YA  ++    ++++  K       + R+KGLGEM
Sbjct: 541 EAGKVYIALPPLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGK----GYMLQRYKGLGEM 596

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            A QL ET MD   RTL+RV I+         +  +  LMG K + R K+I+    F
Sbjct: 597 NAEQLWETTMDPTSRTLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIENHVQF 649


>gi|300853238|ref|YP_003778222.1| DNA gyrase subunit B [Clostridium ljungdahlii DSM 13528]
 gi|300433353|gb|ADK13120.1| DNA gyrase, subunit B [Clostridium ljungdahlii DSM 13528]
          Length = 637

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 254/652 (38%), Positives = 378/652 (57%), Gaps = 22/652 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           Q     YD + I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AGY + I
Sbjct: 3   QEKKQTYDENQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNSIDEALAGYCDKI 62

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V +  +  +TV DNGRG+PV  H K   K T+E+I+T LHAGGKF    Y++SGGLHGV
Sbjct: 63  NVIIHKDNSITVTDNGRGMPVGMHHKM-KKPTVEVIMTILHAGGKFGGGGYKVSGGLHGV 121

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS+   V V R++ I+ Q F RG   S L+         GT+I F+PD +IF 
Sbjct: 122 GASVVNALSEICEVEVKRESHIWRQVFKRGKVASGLDIIGDSEEH-GTKIHFKPDAEIFD 180

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   +D   L +  +  A+L+  +K     +++  E       E F++ GG+K+++    
Sbjct: 181 EI-EYDYDTLAQRLRELAFLNKGIKIRLEDERDDKE-------EIFHYEGGIKSFVTYLN 232

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N+  I  E    + +K      +VE AI + +     I ++ N I T EGGTH +G + 
Sbjct: 233 RNKQPIHKEPIYVEGKKDD---YSVEIAIQYNDGYTENIFAFANNIDTVEGGTHLAGFKS 289

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR    YA+      +   ++  +D+      ++SV + +P+F GQTKTKL + + + 
Sbjct: 290 ALTRVFNDYAKKFGILKENDKNLSGEDIREGLTAVISVKLVDPQFEGQTKTKLGNSEVRG 349

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            V++ + +  +++L +NP  A  +L+  +  S  R   RK RE   RK+ +    LPGKL
Sbjct: 350 IVDSIMGESLNNFLQENPQVAKMILDKSLMASRAREAARKARELTRRKSILENTSLPGKL 409

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS       E+++VEGDSAGGSAKQ RNR  QA+LPLRGKI+NV     +KI   ++I
Sbjct: 410 ADCSSKDPSECEIYLVEGDSAGGSAKQGRNRKFQAILPLRGKIMNVEKQRLDKILGYEEI 469

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A G      +    +RY K+IIMTDADVDGAHI +LLLTFF++ M +L+E+ H++
Sbjct: 470 RAMITAFGAGIGKDFDVNKIRYNKIIIMTDADVDGAHIRTLLLTFFFRYMKELVEKCHVY 529

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           +  PPL+R+ +G K  YA+ ++    +L E        ++I R+KGLGEM + QL +T M
Sbjct: 530 IAQPPLYRVAKGKKEYYAYSDDELDVLLTEIGGKD-SNVDIQRYKGLGEMDSEQLWDTTM 588

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +   RTL++V +   +       +    LMG K + R  FIQE A  + ++ 
Sbjct: 589 NPETRTLIQVNVEDTM----AADEIFTILMGDKVEPRRNFIQENAKKVVNLD 636


>gi|295103719|emb|CBL01263.1| DNA gyrase subunit B [Faecalibacterium prausnitzii SL3/3]
          Length = 664

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 241/671 (35%), Positives = 371/671 (55%), Gaps = 31/671 (4%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +   A+ +    Y+AS I++L+GLE VR RPGMYIG T E+ LHHL  E++DNA+DE +A
Sbjct: 7   TSTNADTATDHEYNASEIQVLKGLEAVRKRPGMYIGSTGERGLHHLVYEIVDNAIDEALA 66

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF--DNSTYE 149
           GY + IEV +  +  + V DNGRGIPV+          + ++ T LHAGGKF  +NS Y+
Sbjct: 67  GYCDHIEVKILKDNIIQVTDNGRGIPVDIQA-DTGLPAVTVVYTILHAGGKFGGENSGYK 125

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRIT 208
           ++GGLHGVG SVVNA S+ L V V R    + Q F RG P   L+    V     GTR+T
Sbjct: 126 VAGGLHGVGASVVNACSEWLTVNVRRDGKEYEQTFRRGDPDGALKCIGTVAEGVTGTRVT 185

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------EIAEKYGIPEK 260
           F+PDP++F D   +D   L K  + +++L+  VK   + ++        +  E       
Sbjct: 186 FKPDPEMFKDTTVYDFDTLEKRLREESFLNAGVKITLTDERQLYTPVLEDGQEGDPCYRS 245

Query: 261 EEFYFPGGLKTYLQTKLENR--SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           E   + GG+K+++    E R   ++   +   K +     RG  E A+ +       + S
Sbjct: 246 EVMCYEGGIKSFVTYLGEKRKLEVLHPNVIYLKGQTD---RGVAEIALQYNSSYNELLLS 302

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N + T +GGTHE G + +LTR    Y         +  ++   D+    + ++SV ++
Sbjct: 303 FANNVNTPDGGTHEEGFKASLTRVFNDYGRSHGLLKDKDENLSGADVREGLICVISVKLQ 362

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRK 434
           E EF GQTK KL + + +  V N +      +  +NP  A  +  +           ++ 
Sbjct: 363 EAEFEGQTKAKLGNTEIRTLVSNMVYSKLMEFFEENPGVAKAIFEKATQAARARAAAKKA 422

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +  V RK+A+   R+PGKLADC +     TE+FIVEGDSAGGSAK  R+ + QA+LPL G
Sbjct: 423 RELVRRKSALETSRMPGKLADCREKDPSRTEIFIVEGDSAGGSAKMGRDSAIQAILPLWG 482

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           K+LNV  A ++KI  N ++M +V ALGC    ++    LRY+KV IM DADVDG+HI +L
Sbjct: 483 KMLNVEKARADKIYGNDKLMPVVLALGCGIGDEFDISKLRYDKVFIMADADVDGSHICTL 542

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M  LIEQ H+++  PPLF++ +G    YA+++     + +E         ++
Sbjct: 543 MLTFFFRYMRPLIEQGHVYVAQPPLFKVQKGNTIKYAYNDAEMAILSQEMP-----GAKV 597

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
           +R+KGLGEM   QL ET M+ + R ++++ I       +   ++   LMG + + R +FI
Sbjct: 598 NRYKGLGEMNPEQLWETTMNPDNRVIVQITIED----AEKADEAFTILMGDQVEPRRRFI 653

Query: 675 QERASFIDDVG 685
           +  A +   + 
Sbjct: 654 ETNAQYAK-LD 663


>gi|254168966|ref|ZP_04875805.1| DNA gyrase, B subunit [Aciduliprofundum boonei T469]
 gi|197622072|gb|EDY34648.1| DNA gyrase, B subunit [Aciduliprofundum boonei T469]
          Length = 648

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 260/661 (39%), Positives = 371/661 (56%), Gaps = 40/661 (6%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YDA +I+ILE  + VR RPGMYIG TDE+ LHHL  EV+DN++DE +AGY + I V +  
Sbjct: 8   YDAKAIQILEDAQAVRKRPGMYIGSTDERGLHHLIYEVVDNSIDEALAGYCSRINVIIHK 67

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G ++V D+GRGIPV+ HP+   KS LE+++T LHAG KFD   Y I+GGLHGVGI VVN
Sbjct: 68  DGSVSVEDDGRGIPVDMHPE-KGKSALEVVMTVLHAGAKFDKKAYRITGGLHGVGIHVVN 126

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR----------------GTRI 207
            LS+ L   + R   I+ Q + RG P   +    K+ N                  GT I
Sbjct: 127 FLSEWLKAYIKRDGKIYFQWYERGKPQCDVHVVGKIENGNFVWIEDGHDEKFKYSRGTYI 186

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PD +IF     F  + + K  +  A+L+  ++     ++         +KE F + G
Sbjct: 187 RFKPDAEIFETT-EFKYSIVKKKLRDLAFLNRGIEIALEDERS-------GKKEIFKYDG 238

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDE 326
           G+  +++   E  + I  ++  GK E+ G     VE+A+ + +   E   ++ NTI T E
Sbjct: 239 GIVEFVKFLNEGYNPIHRDVVYGKDEQDGII---VEFAMQYNDSTSENLLAFVNTIHTVE 295

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKRAISII-SDDLMISAVGILSVFIREPEFAGQTKT 385
           GGTH SG R ALT+ I  +A+     + I  +  +D+      ++ V    P+F GQTK 
Sbjct: 296 GGTHVSGFRSALTKVINDFAKSRNLLKGIDSLQGEDVREGLTAVIHVKHPNPQFEGQTKA 355

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-I 444
           KL + + +  V + +      Y  ++P  AT ++   I  +  R+  RK RE+ R+   +
Sbjct: 356 KLGNSEVKGVVFSIVNKILSTYFEEHPDVATNIVSKAIAAARARIAARKARELARRKGYL 415

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
             L LPGKLADCS+      ELFIVEGDSAGGSAKQAR+R  QA+LPLRGKILNV  A  
Sbjct: 416 ESLDLPGKLADCSEENPERAELFIVEGDSAGGSAKQARDRHFQAILPLRGKILNVEKARI 475

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           +K+  N +I  L+ A+G   R  +    LRY K+IIMTDADVDGAHI +LLLTFFY+ M 
Sbjct: 476 DKVFKNNEIRALISAIGTGVREDFDYSKLRYGKIIIMTDADVDGAHIRTLLLTFFYRYMP 535

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
           +LIE+ H+++   PL+RI +G    Y + +E      +E K    G   + RFKGLGEM 
Sbjct: 536 ELIEKGHIYIAQAPLYRIQKGKNIYYVYSDE-----EKEEKLRELGNASVQRFKGLGEMN 590

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
             QL +T M+   R L+RV I        +     + LMG +   R +FI + A  + ++
Sbjct: 591 PQQLWDTTMNPETRRLIRVTIED----AAEADRLFSILMGEQVGPRREFIIQHAKEVMNI 646

Query: 685 G 685
            
Sbjct: 647 D 647


>gi|209964673|ref|YP_002297588.1| DNA topoisomerase IV subunit B [Rhodospirillum centenum SW]
 gi|209958139|gb|ACI98775.1| DNA topoisomerase IV, B subunit, putative [Rhodospirillum centenum
           SW]
          Length = 663

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 360/657 (54%), Positives = 456/657 (69%), Gaps = 8/657 (1%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
                 D Y A  I +LEGLEPVR RPGMYIGGTDE+ALHHL +EV+DNAMDE +AG+A 
Sbjct: 7   NTARKQDTYSAQDIEVLEGLEPVRRRPGMYIGGTDERALHHLAAEVLDNAMDEAVAGHAT 66

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I++ L  +G +TV DNGRGIPV+ HP++P KS LE+ILTTLH+GGKF    Y  SGGLH
Sbjct: 67  RIDMELTADGTVTVRDNGRGIPVDEHPRYPGKSALEVILTTLHSGGKFSGKVYATSGGLH 126

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG +VVNALSD L V VAR   +++Q++ RG+PL PL     V N+RGT ++F PDP I
Sbjct: 127 GVGSAVVNALSDRLRVEVARDRQLWTQEYCRGVPLGPLTNVGPVHNRRGTVVSFHPDPLI 186

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTYLQ 274
           FGD A F   RL +M +SKAYL   V+  WSCD   +     +P  E  +FP GL  YL 
Sbjct: 187 FGDGAVFKPERLYRMCRSKAYLYRGVEIRWSCDPALLPADGSVPAAETQHFPNGLLDYLT 246

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333
             L  R+ ++ + F G+ E      G VEWAIAW E++   +  YCNTI T  GGTHE G
Sbjct: 247 GTLRQRATVTPQAFAGQAEFPNEA-GRVEWAIAWPEDDEGFSHTYCNTIPTPLGGTHEQG 305

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
           LR ALTR +K Y EL  NKRA  + +DD+M  A+ +LSVF+R+P+F GQTK +LVS +AQ
Sbjct: 306 LRAALTRALKGYGELVGNKRAAGVTADDVMDGAMVLLSVFVRDPQFQGQTKERLVSPEAQ 365

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
           R  +  ++D FDH+L   P  A  LLE +IE++EER R+R Q+E+ RK+  R+LRLPGKL
Sbjct: 366 RLTDATIKDHFDHWLSAAPDAAKALLERLIEKAEERARKRAQKEMARKSPTRRLRLPGKL 425

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS+  A  TE+FIVEGDSAGGSAKQARNR  QA+LPLRGKILNVASA  +K+R NQ++
Sbjct: 426 ADCSRQSAENTEIFIVEGDSAGGSAKQARNREIQAILPLRGKILNVASASVDKLRGNQEL 485

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            DL QALGC T  ++  + LRYE+VIIMTDADVDGAHIASLL+TFFY+EM  LI+  HL+
Sbjct: 486 ADLAQALGCGTGKEFSLDKLRYERVIIMTDADVDGAHIASLLMTFFYREMPGLIQAGHLY 545

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           L  PPL+R++ G    YA D+ HK ++++   +  +GK+EISRFKGLGEM  SQLKET M
Sbjct: 546 LALPPLYRLSGGNTVRYARDDAHKDELMKTVFRTVRGKVEISRFKGLGEMPPSQLKETTM 605

Query: 634 DANKRTLLRVEINKDLN-----SLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D  KRTLLRV +    +       ++T+  +  LMG K + RFKFI E A F  D+ 
Sbjct: 606 DPAKRTLLRVVVPDLRDPEQKVDAEETRSLVESLMGRKPELRFKFITENARFAQDLD 662


>gi|13507742|ref|NP_109691.1| DNA gyrase subunit B [Mycoplasma pneumoniae M129]
 gi|121890|sp|P22447|GYRB_MYCPN RecName: Full=DNA gyrase subunit B
 gi|44484|emb|CAA37622.1| gyrase B subunit [Mycoplasma pneumoniae]
 gi|1673811|gb|AAB95799.1| DNA gyrase subunit B [Mycoplasma pneumoniae M129]
          Length = 650

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 252/664 (37%), Positives = 382/664 (57%), Gaps = 28/664 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
             + + +  YD+SSI+ILEGLE VR RPGMYIG T E+ LHH+  E+IDN++DE + G+A
Sbjct: 1   MEDNNKTQAYDSSSIKILEGLEAVRKRPGMYIGSTGEEGLHHMIWEIIDNSIDEAMGGFA 60

Query: 95  NLIEVSLDGNGFLT-VVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           + ++++L  + F+T V D+GRGIPV+ HPK  N+ST+E + T LHAGGKFDN +Y++SGG
Sbjct: 61  STVKLTL-KDNFVTIVEDDGRGIPVDIHPK-TNRSTVETVFTVLHAGGKFDNDSYKVSGG 118

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPD 212
           LHGVG SVVNALS    V VAR++  +   F  G   +  L  + K   + GT++ F PD
Sbjct: 119 LHGVGASVVNALSSSFKVWVAREHQQYFLAFHNGGEVIGDLVNEGKCDKEHGTKVEFVPD 178

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
             +      +    +    Q  A+L+  ++  +  ++        P+   + + GGL  Y
Sbjct: 179 FTVMEKS-DYKQTVIASRLQQLAFLNKGIQIDFVDERRQ-----NPQSFSWKYDGGLVQY 232

Query: 273 LQTKLENRSLISSEIFTGK-------TEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
           +      +  +  +I  G+         +  ++   VE A  + +     I S+CN I T
Sbjct: 233 IHHLNNEKEPLFEDIIFGEKTDTVKSVSRDESYTIKVEVAFQYNKTYNQSIFSFCNNINT 292

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQ 382
            EGGTH  G R AL + I ++A   +  +     I  DD+      I+S+    P++ GQ
Sbjct: 293 TEGGTHVEGFRNALVKIINRFAVENKFLKETDEKITRDDICEGLTAIISIKHPNPQYEGQ 352

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TK KL + + +  V + + + F+ ++++NP EA  ++   +   E R R ++ RE   RK
Sbjct: 353 TKKKLGNTEVRPLVNSIVSEIFERFMLENPQEANAIIRKTLLAQEARRRSQEARELTRRK 412

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           +      LPGKLADC+      +EL+IVEGDSAGG+AK  R+R  QA+LPLRGKILNV  
Sbjct: 413 SPFDSGSLPGKLADCTTRDPSISELYIVEGDSAGGTAKTGRDRYFQAILPLRGKILNVEK 472

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
           +  E+I NN +I  LV A+GC  +  +  E LRY K+IIMTDADVDGAHI +LLLTFF++
Sbjct: 473 SHFEQIFNNVEISALVMAVGCGIKPDFELEKLRYNKIIIMTDADVDGAHIRTLLLTFFFR 532

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
            MY L+EQ ++++  PPL++++   K +Y   +   ++  ++   H   K  + R+KGLG
Sbjct: 533 FMYPLVEQGNIYIAQPPLYKVSYSNKDLYMQTDVQLEEWKQQ---HPNLKYNLQRYKGLG 589

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           EM A QL ET MD   RTLL+V +            + + LMG +   R +FI++ A  +
Sbjct: 590 EMDAIQLWETTMDPKVRTLLKVTVED----ASIADKAFSLLMGDEVPPRREFIEQNARNV 645

Query: 682 DDVG 685
            ++ 
Sbjct: 646 KNID 649


>gi|76802387|ref|YP_327395.1| DNA topoisomerase II subunit B (DNA gyrase) [Natronomonas pharaonis
           DSM 2160]
 gi|76558252|emb|CAI49840.1| DNA topoisomerase II subunit B (DNA gyrase) [Natronomonas pharaonis
           DSM 2160]
          Length = 639

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 245/653 (37%), Positives = 365/653 (55%), Gaps = 22/653 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           S    Y A  I++LEGLE VR RP MYIG TD + LHHL  EV+DNA+DE +AGY + IE
Sbjct: 2   SQDSEYSAGQIQVLEGLEAVRKRPAMYIGSTDTRGLHHLVYEVVDNAIDEALAGYCDTIE 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V ++ +G +TV D+GRGIPV+ H +  ++  +E+I+T LHAGGKFD+ +Y++SGGLHGVG
Sbjct: 62  VVINDDGSVTVRDDGRGIPVDTH-EDHDRPAVEVIMTVLHAGGKFDSKSYQVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE--KKEKVRNKRGTRITFRPDPKIF 216
           +SVVNALS  L V + R   ++  +F  G P + LE  ++       GT I F PD  IF
Sbjct: 121 VSVVNALSKWLEVEIKRDGHVWHHRFDHGEPENGLEQVREMDPNESTGTEIRFWPDDDIF 180

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                F  + L    +  A+L+  V      ++        P+   F + GG++ ++   
Sbjct: 181 ET-TDFTFSTLESRLRELAFLNPGVGITIRDER-----PEEPDASTFEYDGGIREFVAYL 234

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLR 335
            E R ++   I   + E+   H   VE A+         I ++ N I T EGGTH +G +
Sbjct: 235 NETRDVLHENIIYFEDEEDDIH---VEVAMQATAGVQGSIHAFANNINTREGGTHLTGFK 291

Query: 336 VALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR I  YA      + +  ++  +D+      ++S+   +P+F GQTKTKL + + +
Sbjct: 292 TALTRVINDYATSNGMLKDLDGNLKGEDIREGLTAVISIKHPDPQFEGQTKTKLGNGEVR 351

Query: 394 RTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
             VE+A+ +    +L ++P  A  ++ + V      +  ++ +    RK+A+    LPGK
Sbjct: 352 GIVESAVHEELATHLEEHPDTAEAIISKAVEAAKARKAAKKAEELTRRKSALESTSLPGK 411

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L+DC       +ELF+VEGDSAGGSAKQ RN   QA+LPLRGKILNV     ++I  N +
Sbjct: 412 LSDCQTRDPEESELFVVEGDSAGGSAKQGRNPEFQAILPLRGKILNVEKHRLDRILENNE 471

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I +L+ A+G     ++  E+ RY+K+II+ DADVDGAHI +LLLTF Y+ M  LIE  ++
Sbjct: 472 IRNLITAVGTGIGEEFDIEEARYQKIIILCDADVDGAHIRTLLLTFLYRHMTPLIEAGYV 531

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           +   PPL+R+  G  +  A  E  + +I+EE         ++ RFKGLGEM   QL +T 
Sbjct: 532 YAAQPPLYRVRDGGDTYDAMTEAERDRIVEEVCDGSPD--QVQRFKGLGEMNPKQLWDTT 589

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           M+   R L ++ I              + LMG   + R +FI+E A   + + 
Sbjct: 590 MNPENRILKQITIED----AAAADRMFSVLMGDAVEPRKQFIKEHADEAEWID 638


>gi|254166743|ref|ZP_04873597.1| DNA gyrase, B subunit [Aciduliprofundum boonei T469]
 gi|197624353|gb|EDY36914.1| DNA gyrase, B subunit [Aciduliprofundum boonei T469]
          Length = 648

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 260/661 (39%), Positives = 371/661 (56%), Gaps = 40/661 (6%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YDA +I+ILE  + VR RPGMYIG TDE+ LHHL  EV+DN++DE +AGY + I V +  
Sbjct: 8   YDAKAIQILEDAQAVRKRPGMYIGSTDERGLHHLIYEVVDNSIDEALAGYCSRINVIIHK 67

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G ++V D+GRGIPV+ HP+   KS LE+++T LHAG KFD   Y I+GGLHGVGI VVN
Sbjct: 68  DGSVSVEDDGRGIPVDMHPE-KGKSALEVVMTVLHAGAKFDKKAYRITGGLHGVGIHVVN 126

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR----------------GTRI 207
            LS+ L   + R   I+ Q + RG P   +    K+ N                  GT I
Sbjct: 127 FLSEWLKAYIKRDGKIYFQWYERGKPQCDVHVVGKIENGNFVWIEDGHDEKFKYSRGTYI 186

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PD +IF     F  + + K  +  A+L+  ++     ++         +KE F + G
Sbjct: 187 RFKPDAEIFETT-EFKYSIVKKKLRDLAFLNRGIEITLEDERS-------GKKEVFKYDG 238

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDE 326
           G+  +++   E  + I  ++  GK E+ G     VE+A+ + +   E   ++ NTI T E
Sbjct: 239 GIVEFVKFLNEGYNPIHRDVVYGKDEQDGII---VEFAMQYNDSTSENLLAFVNTIHTVE 295

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKRAISII-SDDLMISAVGILSVFIREPEFAGQTKT 385
           GGTH SG R ALT+ I  +A+     + I  +  +D+      ++ V    P+F GQTK 
Sbjct: 296 GGTHVSGFRSALTKVINDFAKSRNLLKGIDSLQGEDVREGLTAVIHVKHPNPQFEGQTKA 355

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-I 444
           KL + + +  V + +      Y  ++P  AT ++   I  +  R+  RK RE+ R+   +
Sbjct: 356 KLGNSEVKGVVFSIVNKILSTYFEEHPDVATNIVSKAIAAARARIAARKARELARRKGYL 415

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
             L LPGKLADCS+      ELFIVEGDSAGGSAKQAR+R  QA+LPLRGKILNV  A  
Sbjct: 416 ESLDLPGKLADCSEEDPERAELFIVEGDSAGGSAKQARDRHFQAILPLRGKILNVEKARI 475

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           +K+  N +I  L+ A+G   R  +    LRY K+IIMTDADVDGAHI +LLLTFFY+ M 
Sbjct: 476 DKVFKNNEIRALISAIGTGVREDFDYSKLRYGKIIIMTDADVDGAHIRTLLLTFFYRYMP 535

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
           +LIE+ H+++   PL+RI +G    Y + +E      +E K    G   + RFKGLGEM 
Sbjct: 536 ELIEKGHIYIAQAPLYRIQKGKNIYYVYSDE-----EKEEKLRELGNASVQRFKGLGEMN 590

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
             QL +T M+   R L+RV I        +     + LMG +   R +FI + A  + ++
Sbjct: 591 PQQLWDTTMNPETRRLIRVTIED----AAEADRLFSILMGEQVGPRREFIIQHAKEVMNI 646

Query: 685 G 685
            
Sbjct: 647 D 647


>gi|163790923|ref|ZP_02185346.1| DNA gyrase, B subunit [Carnobacterium sp. AT7]
 gi|159873765|gb|EDP67846.1| DNA gyrase, B subunit [Carnobacterium sp. AT7]
          Length = 645

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 251/659 (38%), Positives = 386/659 (58%), Gaps = 20/659 (3%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
                + Q  ++ YDAS I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +
Sbjct: 2   SEEIKSKQDLANEYDASQIQVLEGLEAVRKRPGMYIGATSSEGLHHLVWEIVDNSIDEAL 61

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AG+A+ I +S++ +G + V+DNGRGIPV+   K   +  LE + T LHAGGKF    Y++
Sbjct: 62  AGFADEINLSIEKDGSIIVMDNGRGIPVDIQAK-TGRPALETVFTILHAGGKFGGGGYKV 120

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG SVVNALS  L V V + + I+ Q++++G  +  +E   +  +K GT + F 
Sbjct: 121 SGGLHGVGSSVVNALSTTLDVYVYKNSKIYHQQYAQGKVVHDVEVIGET-DKHGTTVHFV 179

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PDP+IF +   F+  +L    +  A+L+  +K      +E  + +       +++ GG+K
Sbjct: 180 PDPEIFKETVEFNFDKLATRVRELAFLNKGLKITVEDKREDKQAFLE-----YHYEGGIK 234

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGT 329
           +Y++   EN+ ++  E    + E++G    T+E A+   +       S+ N I T EGGT
Sbjct: 235 SYVEFLNENKVVLYDEPIFLEGEQQGI---TIEVAMQHTDGYHNNLMSFANNIHTYEGGT 291

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           HE G + ALTR I  YA+  +   +   ++  +D+      +LS+   +P+F GQTKTKL
Sbjct: 292 HEFGFKTALTRVINDYAKKNKIIKENEENLTGEDVREGLTIVLSIKHPDPQFEGQTKTKL 351

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRK 446
            + +A+   +      F+ +L++NP  A +++E  ++        +R +    +K+ +  
Sbjct: 352 GNSEARTITDRLFSAHFEKFLMENPPVARQIVEKGLLAARARLAAKRAREVTRKKSGLEI 411

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADCS      +ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++
Sbjct: 412 SNLPGKLADCSSKDPSISELFIVEGDSAGGSAKQGRSRLFQAILPIRGKILNVEKATLDR 471

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           I  N++I  L  A+G      +     RY K++IMTDADVDGAHI +LLLT FY+ M  +
Sbjct: 472 ILANEEIRSLFTAMGTGFGGDFDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPI 531

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           +E  ++++  PPL+++ QG K VY   E+   + L+E       K  I R+KGLGEM A 
Sbjct: 532 VEAGYVYIAQPPLYQVRQGKKMVYLDSEDELNEYLKEIPLS--PKPAIQRYKGLGEMDAE 589

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           QL ET M+   R +L+V ++  + + K        LMG + + R  FI+E A ++ ++ 
Sbjct: 590 QLWETTMNPENRRMLQVTVDDAIEADKSCD----MLMGDRVEPRRIFIEENARYVQNLD 644


>gi|160932418|ref|ZP_02079808.1| hypothetical protein CLOLEP_01253 [Clostridium leptum DSM 753]
 gi|156868377|gb|EDO61749.1| hypothetical protein CLOLEP_01253 [Clostridium leptum DSM 753]
          Length = 646

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 243/654 (37%), Positives = 369/654 (56%), Gaps = 21/654 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
              ++ Y AS I++LEGLE VR RPGMYIG T  + LHHL  E++DNA+DE +AGY + I
Sbjct: 7   TQTNEEYGASDIQVLEGLEAVRKRPGMYIGSTGPRGLHHLVYEIVDNAIDEALAGYCDKI 66

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V +     + V DNGRGIPV   PK      + ++ T LHAGGKF    Y++SGGLHGV
Sbjct: 67  DVRILPGDIIVVEDNGRGIPVGIQPKM-GIPAVTVVFTVLHAGGKFGGGGYKVSGGLHGV 125

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS  L V V+    I+ Q+F RG  ++ LE         GT++TF+ DP+IF 
Sbjct: 126 GASVVNALSTWLEVEVSDGAHIYRQRFERGKTITDLEMIGDTTK-TGTKVTFQADPEIFS 184

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   ++   L    + +A+L+  +      +++   +        F + GG+ ++++   
Sbjct: 185 ESTVYEYETLETRLREQAFLNAGIHIELVDERDPENRVQK----NFLYEGGISSFVEFLH 240

Query: 278 ENR--SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGL 334
           + +   +I  +I   K           E A+ + E   E+   + N I T +GGTHE G 
Sbjct: 241 KRKSLEVIHPDIIHVKGALTD-GSAEAEVAMQYNESYNELLISFANNIHTTDGGTHEEGF 299

Query: 335 RVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           + ALTR +  YA      +    ++  +D+      I+SV ++E +F GQTK KL + + 
Sbjct: 300 KRALTRIMNDYARKYNILKDGDKNLSGEDVREGLTAIISVKLKEAQFEGQTKAKLGNTEI 359

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           +  V+N + +    YL +NP  A  +  + +         R+ +  V RK+A+    LPG
Sbjct: 360 RTLVDNLISEKLSAYLEENPATARAIFEKAMAASRAREAARKARELVRRKSALESAALPG 419

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC       TE++IVEGDSAGGSAK  R+R  QA+LPL GK+LNV  A  +K+  N 
Sbjct: 420 KLADCQSRNPEETEIYIVEGDSAGGSAKGGRDRKFQAILPLWGKMLNVEKARLDKVYGND 479

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++M ++ ALGC    ++    LRY KVIIM DADVDG+HI +LLLTFF++ M  LIE+ H
Sbjct: 480 KLMPVITALGCGIGDEFDLAKLRYGKVIIMADADVDGSHIRTLLLTFFFRFMKPLIEEGH 539

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPL+R+T+G    YA+ ++ + ++L+E          I R+KGLGEM + QL ET
Sbjct: 540 IYIAQPPLYRLTKGKNHYYAYSDKERDQMLKEMTVTAP----IQRYKGLGEMDSEQLWET 595

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            M+   R +L+VE+           ++   LMG K + R +FI++ A ++ ++ 
Sbjct: 596 TMNPETRIMLKVELED----AAAADETFTILMGDKVEPRREFIEKNAKYVQNLD 645


>gi|238922437|ref|YP_002935950.1| DNA gyrase, B subunit [Eubacterium rectale ATCC 33656]
 gi|238874109|gb|ACR73816.1| DNA gyrase, B subunit [Eubacterium rectale ATCC 33656]
 gi|291526542|emb|CBK92129.1| DNA gyrase subunit B [Eubacterium rectale DSM 17629]
 gi|291529185|emb|CBK94771.1| DNA gyrase subunit B [Eubacterium rectale M104/1]
          Length = 645

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 254/657 (38%), Positives = 379/657 (57%), Gaps = 19/657 (2%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           +   Q  +  Y A  I+ILEGLE VR RPGMYIG T  + LHHL  E++DNA+DE +AGY
Sbjct: 2   SKEIQQNNQEYGADQIQILEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNAVDEALAGY 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
              IEV+++ +  +TV D+GRGIPV  + K   KS LE++ T LHAGGKF    Y++SGG
Sbjct: 62  CKNIEVTIEEDNSITVQDDGRGIPVGTNHKA-KKSALEVVFTVLHAGGKFGGGGYKVSGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPD 212
           LHGVG SVVNALS  L V V +   I+ Q + RG     ++   +      GT++ F PD
Sbjct: 121 LHGVGASVVNALSTWLTVEVYKDGNIYRQSYKRGKTDDTVKIVGQCDESLHGTKVHFLPD 180

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P+IF +   +D   L +  +  A+L+  +K      +E +    +     F++ GG+K +
Sbjct: 181 PEIFEETV-YDYDTLKQRLRETAFLTKGLKITLKDVRENSHHNHV-----FHYEGGIKEF 234

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++     +  +  E+   +  + G +   VE A+   +       S+ N ++T EGGTH 
Sbjct: 235 VEYLNRGKEALYDEVIYCEGTQNGVY---VEVALQHNDSFNDSTFSFVNNVITPEGGTHL 291

Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G R ALT+    YA   +  +        DD+      I+S+ I EP+F GQTK KL +
Sbjct: 292 AGFRNALTKTFNAYAREKKILKDSDPALTGDDIREGLTAIISIKIEEPQFEGQTKQKLGN 351

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLR 448
            +A+  V+  + +   ++L QNP  A  + E  ++ +      R+ +    RKT++    
Sbjct: 352 SEARGAVDAVVSEKLTYFLEQNPDVAKNICEKSLLAQRAREAARKARDLTRRKTSLDGGT 411

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS       E+FIVEGDSAGGSAK AR+R+ QA+LPLRGKILNV  A  ++I 
Sbjct: 412 LPGKLADCSDKDPKNCEIFIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARLDRIY 471

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +N +I  ++ A G      +    LRY+K+IIMTDADVDGAHIA+L+LTF Y+ M DLI+
Sbjct: 472 DNAEIRAMITAFGTGIHEDFDITKLRYDKIIIMTDADVDGAHIATLMLTFLYRFMPDLIK 531

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           + H++L +PPL+++ +     YA+D++  ++IL +  +    K  I R+KGLGEM A QL
Sbjct: 532 EGHVYLATPPLYKVEKNKGVWYAYDDDELKQILNDIGRDNNNK--IQRYKGLGEMDADQL 589

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            ET MD + R L +V I+    +  +   +   LMG K + R +FI+  A ++ ++ 
Sbjct: 590 WETTMDPDHRILKQVMIDG--ENSSELDVTFTTLMGDKVEPRKEFIEANAKYVTNLD 644


>gi|170016363|ref|YP_001727282.1| DNA gyrase, B subunit [Leuconostoc citreum KM20]
 gi|169803220|gb|ACA81838.1| DNA gyrase, B subunit [Leuconostoc citreum KM20]
          Length = 669

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 252/660 (38%), Positives = 373/660 (56%), Gaps = 22/660 (3%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
            A    + + +Y+A  I++LEGLE VR RPGMYIG T  + LHHL  E++DN +DE +AG
Sbjct: 24  SASTVTANAGDYNADQIQVLEGLEAVRKRPGMYIGTTTAQGLHHLVWEIVDNGIDEALAG 83

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           +A+ I V+++ +  +TV D+GRGIPV+   K   K  LE + T LHAGGKF    Y++SG
Sbjct: 84  FASHITVTIEADNSITVTDDGRGIPVDIQTK-TGKPALETVFTVLHAGGKFGGGGYKVSG 142

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRP 211
           GLHGVG SVVNALS  L V V R   ++   F  G +    ++  EK    RGT + F+P
Sbjct: 143 GLHGVGASVVNALSTNLDVKVVRDGQVYYMDFKVGRVNTRMVKLDEKPTIARGTIVHFKP 202

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           D  IF +   F+   LL   +  A+L+  ++   + ++        P  E F++ GG+K 
Sbjct: 203 DADIFRETTTFNYNTLLTRVRELAFLNKGLRISITDNR-----AETPMTESFHYEGGIKE 257

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTH 330
           Y++     + ++  E    + E+ G     VE A+ +  +    + ++ N I T EGGTH
Sbjct: 258 YVKYLNAEKVVVFPEPVYVEGEENGI---VVEAALQYTTDVKDSLRTFTNNINTYEGGTH 314

Query: 331 ESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           E+G + ALTR I  YA      +    S+  +D+      I+S+   +P+F GQTKTKL 
Sbjct: 315 ETGFKTALTRVINDYARKNGQLKENAESLTGEDVREGMTAIVSIKHPDPQFEGQTKTKLG 374

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKL 447
           + DA++  +    + F  ++++NP  A +++E  I   + RL  ++ RE+  +++ +   
Sbjct: 375 NSDARQATDRMFSETFSRFMMENPAVAKQIVEKGILAQKARLAAKRAREMTRKQSGLEIG 434

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLAD + N    +ELFIVEGDSAGGSAKQ RNR  QA+LP+RGKILNV  A  +K+
Sbjct: 435 NLPGKLADNTSNDPAISELFIVEGDSAGGSAKQGRNRLTQAILPIRGKILNVEKATLDKV 494

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N++I  L  A+G      +  E   Y KVIIMTDADVDGAHI +LLLT FY+ M  L+
Sbjct: 495 LANEEIRSLFTAMGTGFGDDFNVEKANYHKVIIMTDADVDGAHIRTLLLTLFYRYMRPLV 554

Query: 568 EQKHLFLISPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           +  ++++  PPL+ +  G      Y   +E  +  L +   + K K  + R+KGLGEM  
Sbjct: 555 DSGYIYIAQPPLYGVALGNSKNREYLDSDEELEDYLAQLPANIKPK--VQRYKGLGEMDF 612

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL +T MD   R LLRV    D    +      + LMG     R +FI+E A F++++ 
Sbjct: 613 DQLADTTMDPLNRRLLRV----DPADAEAADSIFDMLMGDDVAPRREFIEENAVFVENLD 668


>gi|229551099|ref|ZP_04439824.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus
           LMS2-1]
 gi|258507000|ref|YP_003169751.1| DNA gyrase subunit B [Lactobacillus rhamnosus GG]
 gi|258538197|ref|YP_003172696.1| DNA gyrase subunit B [Lactobacillus rhamnosus Lc 705]
 gi|229315560|gb|EEN81533.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus
           LMS2-1]
 gi|257146927|emb|CAR85900.1| DNA gyrase subunit B [Lactobacillus rhamnosus GG]
 gi|257149873|emb|CAR88845.1| DNA gyrase subunit B [Lactobacillus rhamnosus Lc 705]
 gi|259648370|dbj|BAI40532.1| DNA gyrase B subunit [Lactobacillus rhamnosus GG]
          Length = 653

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 261/649 (40%), Positives = 369/649 (56%), Gaps = 22/649 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YDAS I++L GLE VR RPGMYIG T  + LHHL  E+IDN +DE +AG+A  IEV ++ 
Sbjct: 19  YDASQIQVLSGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNGIDEALAGFATRIEVEVNP 78

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +  +TV D+GRGIPV+   K   +  LE + T LHAGGKF    Y++SGGLHGVG SVVN
Sbjct: 79  DNSVTVTDDGRGIPVDIQAK-TGRPALETVYTVLHAGGKFGGGGYKVSGGLHGVGASVVN 137

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPDPKIFGDKAGF 222
           ALS  L VTV R    +   F RG   +P+++         GT++ F+PDP IF +   F
Sbjct: 138 ALSTNLDVTVVRGGKRYYIDFVRGKVNTPMKELGPAPEHEHGTKVHFQPDPDIFTETTTF 197

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L    +  A+L+  +K  ++  +         EK  F++ GGLK+Y+    + +  
Sbjct: 198 DDKVLTTRIRELAFLNKGLKLTFTDKR-----AATHEKLVFHYEGGLKSYVDFLTKKKEN 252

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRG 341
           +  E    + + KG    TVE A+ +  +      ++ N I T EGGTHE+G + ALTR 
Sbjct: 253 LLQEPIYVEGQDKGI---TVEVALQYTNDYHSTLLTFANNIHTYEGGTHETGFKTALTRV 309

Query: 342 IKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  YA  +   +        DD+      ++SV   +P+F GQTKTKL + DA+  V+  
Sbjct: 310 INDYARRSGALKDSDDPLSGDDVREGLTAVVSVKHPDPQFEGQTKTKLGNSDARTVVDRT 369

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
             D F+ +L+++P +   +++  +  S+ RL  ++ RE   +K+ +    LPGKLAD + 
Sbjct: 370 FSDHFNKFLMEHPADGKLIIDKAMLASKARLAAKRAREVTRKKSGLEISNLPGKLADNTS 429

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +ELFIVEGDSAGGSAK  R+R  QA+LP+RGKILNV  A  E+I  N++I  L  
Sbjct: 430 KDPEISELFIVEGDSAGGSAKSGRSRLTQAILPIRGKILNVEKASMERILANEEIRTLFT 489

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+G      +     RY K+IIMTDADVDGAHI +LLLT  Y+ M  +++  ++++  PP
Sbjct: 490 AMGTGFGQDFDISKARYHKLIIMTDADVDGAHIRTLLLTLIYRYMRPVLDAGYVYIAQPP 549

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+R+ QG    Y   +E  Q IL +       K +I R+KGLGEM ASQL ET MD + R
Sbjct: 550 LYRLRQGKMMRYIDSDEELQDILGQLPPS--PKPDIQRYKGLGEMDASQLWETTMDPDTR 607

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685
            LLRV         +        LMG   + R KFI+E A F+D  ++ 
Sbjct: 608 RLLRVS----PKDAEQADGIFEMLMGDHVEPRRKFIEENAVFVDPNNID 652


>gi|212639275|ref|YP_002315795.1| DNA topoisomerase IV subunit B [Anoxybacillus flavithermus WK1]
 gi|212560755|gb|ACJ33810.1| DNA topoisomerase IV subunit B [Anoxybacillus flavithermus WK1]
          Length = 657

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 252/650 (38%), Positives = 358/650 (55%), Gaps = 34/650 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DE +AGY   I V++ 
Sbjct: 10  TYNEDTIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALAGYGKRIIVTIH 69

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V D GRG+P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 70  NDQSISVQDEGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 127

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+ L VT+ R   I+ Q+F  G       +K  V  + GT+I F+PDP IF     F
Sbjct: 128 NALSEWLEVTIHRDGFIYYQRFEHGGKPVTTLEKIGVTKQTGTKIQFKPDPTIFST-TTF 186

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               + +  +  A+L   +K     ++           + FY+  G++ ++Q   E + +
Sbjct: 187 HHETISERLRESAFLLKGLKIELYDER-------TGLCDTFYYENGIEAFVQYLNEEKDV 239

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +   +F    +        VE+A  + +     + S+ N + T +GGTHE G + A+TR 
Sbjct: 240 LHPVVFFTGEQSD----IEVEFAFQFHDGYAENMLSFVNHVRTKDGGTHEIGAKTAMTRV 295

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397
             +YA       +R  ++   D+      I+SV I E   +F GQTK KL + +A+  VE
Sbjct: 296 FNEYARKVGLLKERDKNLEGTDIREGLSAIISVRIPEALLQFEGQTKGKLGTPEARSAVE 355

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKLA 454
             + +   ++L +NP  AT L++  I   + R   RK RE  R    RK +   L GKL 
Sbjct: 356 AVVSEKLTYFLNENPDIATLLIKKAIRAFQAREAARKAREEARSGKKRKGKEHVLSGKLT 415

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
                     EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I 
Sbjct: 416 PAQTRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 475

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++ A+G    + +  +D+ Y+KVIIMTDAD DGAHI  LLLTFFY+ M  LIE   +F+
Sbjct: 476 TIIHAIGGGVGADFSLDDIHYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVFI 535

Query: 575 ISPPLFRITQ--GTKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
             PPL+++++  G K V  YA  +E  Q IL++  K       I R+KGLGEM A QL E
Sbjct: 536 ALPPLYKVSKKVGKKEVVEYAWTDEQLQSILKKIGK----GYTIQRYKGLGEMNADQLWE 591

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           T M+   RTL+RV I+         +  +  LMG K + R K+I+    F
Sbjct: 592 TTMNPETRTLIRVRIDD----AARAERRVTTLMGDKVEPRRKWIESNVQF 637


>gi|296110748|ref|YP_003621129.1| DNA gyrase, B subunit [Leuconostoc kimchii IMSNU 11154]
 gi|295832279|gb|ADG40160.1| DNA gyrase, B subunit [Leuconostoc kimchii IMSNU 11154]
          Length = 669

 Score =  609 bits (1571), Expect = e-172,   Method: Composition-based stats.
 Identities = 254/659 (38%), Positives = 375/659 (56%), Gaps = 22/659 (3%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A   ++ + +Y+A  I++LEGLE VR RPGMYIG T  + LHHL  E++DN +DE +AG+
Sbjct: 25  ASTVEAQAGDYNADQIQVLEGLEAVRKRPGMYIGTTTAQGLHHLVWEIVDNGIDEALAGF 84

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ I V+++ +  +TV D+GRGIPV+   K   K  LE + T LHAGGKF    Y++SGG
Sbjct: 85  ASHITVTIEKDNSITVTDDGRGIPVDIQTK-TGKPALETVFTVLHAGGKFGGGGYKVSGG 143

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPD 212
           LHGVG SVVNALS  L V V R   ++   F  G +    ++  EK    RGT + F PD
Sbjct: 144 LHGVGASVVNALSTNLDVKVVRDGQVYYMDFKIGRVNTRMVKLDEKPTIDRGTIVHFNPD 203

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
             IF +   F+   LL   +  A+L+  ++   + ++        P  E F+F GG+K Y
Sbjct: 204 ADIFRETTTFNYNTLLTRVRELAFLNKGLRISITDNR-----LETPVVESFHFEGGIKEY 258

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHE 331
           ++     +++I  E    + E+ G     VE A+ +  +    + ++ N I T EGGTHE
Sbjct: 259 VEYLNAEKTVIFPEPVYVEGEENGI---VVEAALQYTTDIKDSLRTFTNNINTYEGGTHE 315

Query: 332 SGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G + ALTR I  YA      +    S+  +D+      I+S+   +P+F GQTKTKL +
Sbjct: 316 TGFKTALTRVINDYARKNGQLKDNAESLTGEDVREGMTAIVSIKHPDPQFEGQTKTKLGN 375

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLR 448
            DA++  +    + F  ++++NP+ A +++E  I   + RL  ++ RE+  +++ +    
Sbjct: 376 SDARQATDRMFSETFSRFMMENPVVAKQIVEKGILAQKARLAAKRAREMTRKQSGLEIGN 435

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLAD + N    +ELFIVEGDSAGGSAKQ RNR  QA+LP+RGKILNV  A  +K+ 
Sbjct: 436 LPGKLADNTSNDPALSELFIVEGDSAGGSAKQGRNRVTQAILPIRGKILNVEKATLDKVL 495

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            N++I  L  A+G      +  E   Y KVIIMTDADVDGAHI +LLLT FY+ M  L++
Sbjct: 496 ANEEIRSLFTAMGTGFGDDFNVEKANYHKVIIMTDADVDGAHIRTLLLTLFYRYMRPLVD 555

Query: 569 QKHLFLISPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
             ++++  PPL+ +  G      Y   +E  +  L +   + K K  + R+KGLGEM   
Sbjct: 556 AGYIYIAQPPLYGVALGNSKTREYLDTDEELETYLAQLPSNIKPK--VQRYKGLGEMDFD 613

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           QL +T MD   R LLRV    D    +      + LMG     R +FI+E A F++++ 
Sbjct: 614 QLADTTMDPLNRRLLRV----DPTDAEAADSIFDMLMGDDVAPRREFIEENAVFVENLD 668


>gi|332182303|gb|AEE17991.1| DNA gyrase, B subunit [Treponema brennaborense DSM 12168]
          Length = 638

 Score =  609 bits (1571), Expect = e-172,   Method: Composition-based stats.
 Identities = 239/650 (36%), Positives = 361/650 (55%), Gaps = 23/650 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y AS+I +L+GLE VR RPGMYIG T    LHHL  EV+DN +DE +AG+ + I V L+
Sbjct: 4   SYSASNITVLKGLEAVRKRPGMYIGSTGPDGLHHLVYEVVDNCIDEAMAGFCDTIVVVLE 63

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  + V DNGRGIPV+ HP     S LE++LT LHAGGKFD  +Y++SGGLHGVG+S V
Sbjct: 64  KDDIVRVEDNGRGIPVDIHP-TEGISALELVLTRLHAGGKFDKGSYKVSGGLHGVGVSCV 122

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L   V +    +  KF+ G   SP+++      +  T I ++ D  IF +   +
Sbjct: 123 NALSSWLEAYVEKDGKKYYMKFNTGAAESPVKETGTTDRRG-TTIRWKADSTIFTETTTY 181

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L    +  A+L+  +K  +  ++        P++  F F GG++ ++    E + +
Sbjct: 182 NFDVLCTRLRELAFLNSGIKIVFRDER-----LTNPKEVVFQFEGGIRHFVSYLNEGKKV 236

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           I  E      E+       VE  I + +     + S+ N I T EGGTH  GL+ ALT  
Sbjct: 237 IPEEPVYISGERDDIQ---VELCIQYNDGYNENMLSFVNDINTREGGTHLEGLKSALTLV 293

Query: 342 IKKYAEL-----TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           + ++ +       +  +   +  +D+      ++SV + EP+F GQTKTKL + + +  V
Sbjct: 294 MNEFLKNNAKLLKKMDKEEKLTGEDVRAGLTSVISVKVPEPQFEGQTKTKLGNTEVRGIV 353

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
            +   +    +  QNP    ++LE  + E +     R+ +    RK ++    LPGKLAD
Sbjct: 354 ASLSNEQLTLFFEQNPRLIEQILEKAVSEAAARIAARKAKEATRRKNSMDSFGLPGKLAD 413

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS       E++IVEGDSAGGSAKQ R+   QA+LPL GK+LNV     +K+ NN ++  
Sbjct: 414 CSSKDPTECEVYIVEGDSAGGSAKQGRDPKIQAILPLWGKMLNVEKTRIDKVINNDKLQP 473

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ +LG      +  E LRY K+IIM DADVDG+HI++LLLTFF++ M  LIE  ++++ 
Sbjct: 474 VIASLGAGIGKDFNVEKLRYHKIIIMADADVDGSHISTLLLTFFFRYMPQLIEHGYVYIA 533

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL++I  G K  +   +  + +IL+      KGK++I R+KGLGEM   +LKET MD 
Sbjct: 534 MPPLYKIKLGKKEHFVFSDAERDEILQTLG-DDKGKVDIQRYKGLGEMEWKELKETTMDP 592

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             R + RVE+   +            LMG + + R KFI++ A +   + 
Sbjct: 593 ANRKMKRVELTDAV----AADHIFTTLMGEEVEPRRKFIEDNAVYAT-LD 637


>gi|306821823|ref|ZP_07455415.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
 gi|304550130|gb|EFM38129.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
          Length = 649

 Score =  609 bits (1571), Expect = e-172,   Method: Composition-based stats.
 Identities = 260/654 (39%), Positives = 383/654 (58%), Gaps = 21/654 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +  +  Y A  I++LEGLEPVR RPGMYIG T  K LHHL  EV+DNA+DE +AG+   
Sbjct: 11  EEKVNSEYGAEQIQVLEGLEPVRKRPGMYIGSTGSKGLHHLVYEVVDNAIDEALAGFCKN 70

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I VS+D N  +TV+D+GRGIPVE HPK   KSTLE +LT LHAGGKF    Y++SGGLHG
Sbjct: 71  IYVSIDVNNGITVIDDGRGIPVEVHPK-TGKSTLETVLTVLHAGGKFGAGGYKVSGGLHG 129

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKI 215
           VG+SVVNALS  L   V +   I+ Q+F +G P+S +         +RGT I+F PD  +
Sbjct: 130 VGVSVVNALSKSLTAVVKKDGKIYKQEFEKGNPVSDVHVVGDCPMEERGTCISFLPDETV 189

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   +    L    +  A+L+  +      ++ I +         +++ GG+  Y++ 
Sbjct: 190 FEETV-YSFEVLEHRLRELAFLNKGISITLEDNRTIEKVTRK-----YHYEGGIIEYVKA 243

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             +NR  ++  I+  K +++ ++   +E A+ + +     I S+ N I T EGG H  G 
Sbjct: 244 LNKNREALTEVIYFNKLDEEFSYD--IEIAMQYTDAYVENIYSFANNINTVEGGMHLIGF 301

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           + ALTR +  YA       ++  +   +D+      I+SV + EP++ GQTKTKL +   
Sbjct: 302 KSALTRVVNDYARKNNMLKEKDENFTGEDIREGLTAIISVKLPEPQYEGQTKTKLGNPQM 361

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
           + +VE    D    +L +NP  A  ++E  +     R   ++ R+   RK  +    LPG
Sbjct: 362 RSSVEQITVDQVATFLEENPATARIIMEKCMRSQRARQAAKRARDLTRRKGILESTSLPG 421

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +E+FIVEGDSAGGSAK+ RN  NQA+LPLRGKILNV  A  +K   + 
Sbjct: 422 KLADCREKDPSKSEIFIVEGDSAGGSAKEGRNSQNQAILPLRGKILNVEKARLDKALQSD 481

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
            I +++ A GC   S++ +  LRY K+IIM+DADVDGAHI +L+LTFF++ M  LIE+ +
Sbjct: 482 TIKNMITAFGCGIGSEFDDSKLRYHKIIIMSDADVDGAHIRTLILTFFFRYMRPLIEKGY 541

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPLF I +G K+ YA+  E  +  L E    G+ +  +SR KGLGEM A +L +T
Sbjct: 542 VYIAQPPLFSIEKGKKTYYAYSPEELEAKLNEI---GRERTVVSRNKGLGEMDAEELGDT 598

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD  KR LL+V +   +       +  + LMG K + R +FIQ+ A +++++ 
Sbjct: 599 TMDPAKRVLLKVNLEDAI----AADEIFDILMGDKVEPRREFIQKNAKYVENLD 648


>gi|257884846|ref|ZP_05664499.1| gram positive topoisomerase IV [Enterococcus faecium 1,231,501]
 gi|257820684|gb|EEV47832.1| gram positive topoisomerase IV [Enterococcus faecium 1,231,501]
          Length = 681

 Score =  609 bits (1571), Expect = e-172,   Method: Composition-based stats.
 Identities = 249/657 (37%), Positives = 360/657 (54%), Gaps = 33/657 (5%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +  ++ Y+ SSI++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DE ++GY + 
Sbjct: 2   AKKVNNEYNDSSIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGSE 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+V++  +  +TV D+GRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHG
Sbjct: 62  IDVTIHEDNSITVADSGRGMPVGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHG 119

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           VG SVVNALS  L VT+ R    + QKF  G  P   L+K  K +   GT + F PD  I
Sbjct: 120 VGASVVNALSKWLTVTIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTTVHFLPDDTI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     F    L +  +  A+L   VK   S  +        P KE F++  G+K ++  
Sbjct: 180 FSTT-KFSYEILAERLRESAFLLKGVKISLSDLR-----GEEPVKEIFHYEEGIKEFVDY 233

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
             E +  ++  +     EK+G     VE A  + +   E   S+ N + T +GGTHE+G+
Sbjct: 234 LNEEKDTLTPVV-YFSGEKEGI---EVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGM 289

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390
           + A+T+   +YA       +R  ++   D       +LS+ + E   +F GQTK KL + 
Sbjct: 290 KAAMTKSYNEYARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTP 349

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---L 447
            A+  V+N + +    YL +N   +  L+   I+  E R   RK RE +R    RK    
Sbjct: 350 VARTVVDNVISEQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGES 409

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            L GKL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I
Sbjct: 410 LLSGKLTPAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDI 469

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N++I  ++  +G     ++  ED  Y+KVIIMTDAD DGAHI  LLLTFFY+ M  LI
Sbjct: 470 LKNEEINTMIYTIGAGVGPEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLI 529

Query: 568 EQKHLFLISPPLFRITQG---TKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
           E   +++  PPL+++++G    + + YA  ++    ++++  K       + R+KGLGEM
Sbjct: 530 EAGKVYIALPPLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGK----GYMLQRYKGLGEM 585

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            A QL ET MD   RTL+RV I+         +  +  LMG K + R K+I+    F
Sbjct: 586 NAEQLWETTMDPTSRTLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIENHVQF 638


>gi|257878031|ref|ZP_05657684.1| gram positive topoisomerase IV [Enterococcus faecium 1,230,933]
 gi|257881183|ref|ZP_05660836.1| gram positive topoisomerase IV [Enterococcus faecium 1,231,502]
 gi|257889770|ref|ZP_05669423.1| gram positive topoisomerase IV [Enterococcus faecium 1,231,410]
 gi|257892293|ref|ZP_05671946.1| gram positive topoisomerase IV [Enterococcus faecium 1,231,408]
 gi|258616477|ref|ZP_05714247.1| DNA topoisomerase IV subunit B [Enterococcus faecium DO]
 gi|260559081|ref|ZP_05831267.1| gram positive topoisomerase IV [Enterococcus faecium C68]
 gi|257812259|gb|EEV41017.1| gram positive topoisomerase IV [Enterococcus faecium 1,230,933]
 gi|257816841|gb|EEV44169.1| gram positive topoisomerase IV [Enterococcus faecium 1,231,502]
 gi|257826130|gb|EEV52756.1| gram positive topoisomerase IV [Enterococcus faecium 1,231,410]
 gi|257828672|gb|EEV55279.1| gram positive topoisomerase IV [Enterococcus faecium 1,231,408]
 gi|260074838|gb|EEW63154.1| gram positive topoisomerase IV [Enterococcus faecium C68]
          Length = 681

 Score =  609 bits (1571), Expect = e-172,   Method: Composition-based stats.
 Identities = 249/657 (37%), Positives = 360/657 (54%), Gaps = 33/657 (5%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +  ++ Y+ SSI++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DE ++GY + 
Sbjct: 2   AKKVNNEYNDSSIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGSE 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+V++  +  +TV D+GRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHG
Sbjct: 62  IDVTIHEDNSITVADSGRGMPVGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHG 119

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           VG SVVNALS  L VT+ R    + QKF  G  P   L+K  K +   GT + F PD  I
Sbjct: 120 VGASVVNALSKWLIVTIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTTVHFLPDDTI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     F    L +  +  A+L   VK   S  +        P KE F++  G+K ++  
Sbjct: 180 FSTT-KFSYEILAERLRESAFLLKGVKISLSDLR-----GEEPVKEIFHYEEGIKEFVDY 233

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
             E +  ++  +     EK+G     VE A  + +   E   S+ N + T +GGTHE+G+
Sbjct: 234 LNEEKDTLTPVV-YFSGEKEGI---EVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGM 289

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390
           + A+T+   +YA       +R  ++   D       +LS+ + E   +F GQTK KL + 
Sbjct: 290 KAAMTKSYNEYARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTP 349

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---L 447
            A+  V+N + +    YL +N   +  L+   I+  E R   RK RE +R    RK    
Sbjct: 350 VARTVVDNVISEQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGES 409

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            L GKL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I
Sbjct: 410 LLSGKLTPAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDI 469

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N++I  ++  +G     ++  ED  Y+KVIIMTDAD DGAHI  LLLTFFY+ M  LI
Sbjct: 470 LKNEEINTMIYTIGAGVGPEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLI 529

Query: 568 EQKHLFLISPPLFRITQG---TKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
           E   +++  PPL+++++G    + + YA  ++    ++++  K       + R+KGLGEM
Sbjct: 530 EAGKVYIALPPLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGK----GYMLQRYKGLGEM 585

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            A QL ET MD   RTL+RV I+         +  +  LMG K + R K+I+    F
Sbjct: 586 NAEQLWETTMDPTSRTLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIENHVQF 638


>gi|331700400|ref|YP_004397359.1| DNA gyrase subunit B [Lactobacillus buchneri NRRL B-30929]
 gi|329127743|gb|AEB72296.1| DNA gyrase, B subunit [Lactobacillus buchneri NRRL B-30929]
          Length = 647

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 250/660 (37%), Positives = 371/660 (56%), Gaps = 20/660 (3%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
                  +  +  YDAS I++LEGLE VR RPGMYIG T  + LHHL  E++DN +DE +
Sbjct: 2   ADEKETKKELAHEYDASQIQVLEGLEAVRKRPGMYIGTTSSQGLHHLVWEIVDNGIDEAL 61

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AG+A  I V+++ +  +TV D+GRGIPV+   K   K  LE + T LHAGGKF    Y++
Sbjct: 62  AGFATKITVTVEKDNSITVTDDGRGIPVDIQKK-TGKPALETVFTILHAGGKFGGGGYKV 120

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITF 209
           SGGLHGVG SVVNALS EL V V R   ++   FSRG   + ++   +V +   GT++ F
Sbjct: 121 SGGLHGVGASVVNALSSELDVEVTRDGKVYYMDFSRGHVKTKMKVVREVSDDLHGTKVHF 180

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PDP IF +   +D   L    +  A+L+  ++      +        P +++F + GG+
Sbjct: 181 LPDPDIFRETTTYDIKVLTARLRELAFLNKGLRIVVLDLR-----PEKPTEQDFMYEGGI 235

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328
           K Y++    ++  +  E    +    G    TVE AI +  +      ++ N I T EGG
Sbjct: 236 KHYVEYLDNSKETLLDEPIYVEGVMNGI---TVEVAIQYTNDYHNTLMTFTNNIHTYEGG 292

Query: 329 THESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           THE G + ALTR I  YA   +  +    ++  +D+      ++S+   +P+F GQTKTK
Sbjct: 293 THEEGFKRALTRVINDYARKNKLLKDNEPNLSGEDVREGTTAVVSIKHPDPQFEGQTKTK 352

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           L + DA+   +    D F  +L++NP  A K+++  +  S+ R   ++ RE   +K+ + 
Sbjct: 353 LGNSDARTVTDRIFSDHFTKFLMENPKMARKIVDRGMLASKARSAAKRAREVTRKKSGLE 412

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLAD +      +ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  +
Sbjct: 413 ISNLPGKLADNTSKDPKISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMD 472

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           +I  N++I  L  A+G      +    + Y K+IIMTDADVDGAHI +LLLT  Y+ M  
Sbjct: 473 RILANEEIRSLFTAMGTGFGEDFDLSKINYHKLIIMTDADVDGAHIQTLLLTLIYRYMRP 532

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           LI+   +++  PPL+++ QG  S Y   ++     L   +     K  I R+KGLGEM A
Sbjct: 533 LIDAGFVYVAQPPLYQVRQGKMSRYIDSDDDLNAFLGTLQPS--PKPVIQRYKGLGEMDA 590

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL +T M+   R LLRV    + +   +     + LMG K + R +FI++ A+F++++ 
Sbjct: 591 EQLWDTTMNPENRHLLRV----ESSDAAEADKVFSMLMGDKVEPRREFIEDNATFVENLD 646


>gi|47458936|ref|YP_015798.1| DNA gyrase subunit b [Mycoplasma mobile 163K]
 gi|47458264|gb|AAT27587.1| DNA gyrase subunit b [Mycoplasma mobile 163K]
          Length = 647

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 253/652 (38%), Positives = 365/652 (55%), Gaps = 19/652 (2%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           +++NY   +I++LEGLE VR RPGMYIG T +K LHHL  E++DN++DE +AG+AN +++
Sbjct: 8   SNNNYSGKNIQVLEGLEAVRKRPGMYIGTTGKKGLHHLIWEIVDNSIDEAMAGHANQVKI 67

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L+ NG+  + DNGRGIP + H K   KS +E +LT LHAGGKFD  TY++SGGLHGVG 
Sbjct: 68  TLNKNGYAIIEDNGRGIPTDIHEK-TGKSAVETVLTVLHAGGKFDKDTYKVSGGLHGVGA 126

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGD 218
           SVVNALS+ L V V R+  +  Q+F  G P+  L     V     GT+I+F PD  I   
Sbjct: 127 SVVNALSNHLEVWVKREGKLHYQEFRFGKPVKALNIISDVEESDTGTKISFFPDYSIMDK 186

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   ++   +  AYL+  +K     ++        PE  EFY+ GG+  Y++    
Sbjct: 187 N-EFEYDVIVDRAKQIAYLNRGLKLILRDER-----QEEPEDIEFYYEGGIIEYVEALNI 240

Query: 279 NRSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRV 336
           ++  +   +   + ++ G     TVE A+ + +       SY N I T EGGTHE G   
Sbjct: 241 SKKALHENVIYAEGKEVGDEGDITVEVALQYTDSYQPNIVSYANNISTIEGGTHEQGFVD 300

Query: 337 ALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           AL R    YA   +  +        DD+      I+S+   +P F GQTK KL + DA+ 
Sbjct: 301 ALIRIFNNYAGENKLMKNDKEKLTRDDIREGLTAIISIKHVDPVFEGQTKAKLGNKDART 360

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN-RKTAIRKLRLPGKL 453
                L      +L++NP +A  ++E V+   + R      RE   +K +     LPGKL
Sbjct: 361 ATNKVLSSVLYKFLLENPDQAKVIIEKVLFSQKIRFSASAAREATIKKNSFGISSLPGKL 420

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS   A  +EL+IVEG+SAGGSAK  R+R  QA+LPLRGK++N   A   K+  N +I
Sbjct: 421 ADCSTKNAEISELYIVEGNSAGGSAKMGRDRETQAILPLRGKVINAEKANIVKVFENTEI 480

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
           + L+ ALG     ++    LRY KV+IMTDADVDGAHI +LLLTF Y     LIE   ++
Sbjct: 481 LSLITALGTGVGPEFNINKLRYHKVVIMTDADVDGAHIRTLLLTFLYHHFRPLIEYGFIY 540

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           +  PPL++I+ G    YA  +  K+++L++   + K    I R+KGLGEM   QL ET M
Sbjct: 541 IAQPPLYKISYGKSFQYAFSDAEKEEVLKQLLPNQKA--TIQRYKGLGEMDPEQLWETTM 598

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +   R +L+V+I              + LMG     R +FI++ A ++  + 
Sbjct: 599 NPESRKMLQVQIED----AAIADLVFSTLMGGDVAPRREFIEKNAKYVKQID 646


>gi|282880626|ref|ZP_06289332.1| DNA gyrase, B subunit [Prevotella timonensis CRIS 5C-B1]
 gi|281305521|gb|EFA97575.1| DNA gyrase, B subunit [Prevotella timonensis CRIS 5C-B1]
          Length = 657

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 258/669 (38%), Positives = 390/669 (58%), Gaps = 30/669 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              Q+  +NY AS+I++LEGLE VR RP MYIG   EK LHHL +E +DN++DE +AGY 
Sbjct: 2   AEKQNTENNYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLINETVDNSIDEAMAGYC 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             IEV+++ +  +TV DNGRGIPV+ H K    S LE+++T LHAGGKFD  +Y++SGGL
Sbjct: 62  TDIEVTINEDESITVQDNGRGIPVDQHEKLHK-SALEVVMTVLHAGGKFDKGSYKVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+S VNALS  +   V R   I+ Q++ +G  L P++   +  +KRGTR  F PD  
Sbjct: 121 HGVGVSCVNALSSHMTSQVFRDGKIYQQEYEKGKALYPVKVVGET-DKRGTRQQFWPDGS 179

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     F    + +  +  A+L+  ++   +  +   E  G    E F+   GLK +++
Sbjct: 180 IFTTTH-FQWDIIARRMRELAFLNAGIRITLTDLRPNEE--GKTRTEVFHAKDGLKEFVR 236

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               +R+ +  ++   KTEK+G     +E AI +  +    I SY N I T EGGTH +G
Sbjct: 237 YVDRHRTHLFDDVIYLKTEKQGIP---IEVAIMYNTDYSENIHSYVNNINTIEGGTHLTG 293

Query: 334 LRVALTRGIKKYAE------LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
            R ALTR +K YA+          K  I I  +D       ++S+ + EP+F GQTKTKL
Sbjct: 294 FRAALTRTLKTYADSEPTISKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKL 353

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRK 446
            + +    V+ A+ +   +YL ++P EA ++ E V+  +  R+  RK RE  ++   +  
Sbjct: 354 GNSEVSGAVQQAVGEALSNYLEEHPTEAKQICEKVVLAATARIAARKARESVQRKNFMSG 413

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADCS       E+F+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV      +
Sbjct: 414 GGLPGKLADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQWHR 473

Query: 507 IRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           +   + +M+++Q++G R         +   + LRY+K+IIMTDADVDG+HI +L++T FY
Sbjct: 474 VFEAESVMNIIQSIGVRFGVEGEADREANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFY 533

Query: 561 QEMYDLIEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEF--KKHGKGKIEISRF 617
           + M  +IE+ HL++ +PPL++ + +   S Y + E+ +Q  ++++   +     I   R+
Sbjct: 534 RFMPKVIEEGHLYIATPPLYKCSYKNKASEYCYTEQQRQAFIDKYANGEEDSKSIHTQRY 593

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           KGLGEM   QL ET M+   R L +V I     +  D  +  + LMG   + R +FI++ 
Sbjct: 594 KGLGEMNPEQLWETTMNPKTRLLKQVTIE----NAADADEIFSMLMGDDVEPRREFIEKN 649

Query: 678 ASFIDDVGT 686
           A++  ++  
Sbjct: 650 ATYA-NIDA 657


>gi|303235765|ref|ZP_07322372.1| DNA gyrase, B subunit [Prevotella disiens FB035-09AN]
 gi|302484212|gb|EFL47200.1| DNA gyrase, B subunit [Prevotella disiens FB035-09AN]
          Length = 683

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 259/687 (37%), Positives = 389/687 (56%), Gaps = 29/687 (4%)

Query: 16  SQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALH 75
                   +K  +   +    N    +NY AS+I++LEGLE VR RP MYIG   EK LH
Sbjct: 10  KPKLKNNYQKKNKYNLNKMADNLENENNYSASNIQVLEGLEAVRKRPAMYIGDISEKGLH 69

Query: 76  HLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILT 135
           HL +E +DN++DE +AGY + IEV+++ +  +TV D+GRGIPV+ H K    S LE+++T
Sbjct: 70  HLINETVDNSIDEAMAGYCSHIEVTINEDNSITVEDDGRGIPVDEHEKLHK-SALEVVMT 128

Query: 136 TLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK 195
            LHAGGKFD  +Y++SGGLHGVG+S VNALS  +   V R   I+ Q++ +G PL  ++ 
Sbjct: 129 VLHAGGKFDKGSYKVSGGLHGVGVSCVNALSSHMMSQVFRNGKIYQQEYEKGKPLYSVKI 188

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
                +K GTR  F PD  IF     +    + +  +  A+L+  +K   +  +   E  
Sbjct: 189 VGDT-DKTGTRQQFWPDASIFTTTI-YQWDIVARRMRELAFLNAGIKITLTDLRPNEE-- 244

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PE 314
           G  ++E F+   GLK +++    +R+ +  ++   KTEK+G     +E AI +  +    
Sbjct: 245 GKTKQEVFHAQEGLKEFVRYVDRHRTHLFDDVIYLKTEKQGIP---IEVAIMYNNDYNEN 301

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL------TQNKRAISIISDDLMISAVG 368
           I SY N I T EGGTH +G R ALTR +K YA+          K  I I  +D       
Sbjct: 302 IHSYVNNINTIEGGTHLTGFRTALTRTLKAYADNDTQIAKQIEKAKIEITGEDFREGLTA 361

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           ++S+ + EP+F GQTKTKL + +    V+ A+ +   +YL +NP EA  + + VI  +  
Sbjct: 362 VISIKVAEPQFEGQTKTKLGNSEVSGAVQQAVGEALSYYLEENPAEAKLICDKVILAATA 421

Query: 429 RLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
           R+  RK RE   RK  +    LPGKLADCS       E+F+VEGDSAGGSAKQ R+R  Q
Sbjct: 422 RIAARKARESVQRKNVMTGGGLPGKLADCSNKDPKECEIFLVEGDSAGGSAKQGRDRYTQ 481

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIM 541
           A+LPLRGKILNV      ++   + +M+++Q++G R         +   + LRY+K+IIM
Sbjct: 482 AILPLRGKILNVEKVQRHRVFEAESVMNIIQSIGVRFGVDGESDFEANTDKLRYDKIIIM 541

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           TDADVDG+HI +L++T FY+ M  +IE+ HL++ +PPL++ T    S Y + E+ + + L
Sbjct: 542 TDADVDGSHIDTLIMTLFYRYMPRVIEEGHLYIATPPLYKCTFKKVSEYCYTEQQRLQFL 601

Query: 602 EEF--KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
           E++         +   R+KGLGEM   QL +T M+   R L +V I           +  
Sbjct: 602 EKYVGGDEENKALHTQRYKGLGEMNPEQLWDTTMNPKTRLLKQVTIENATT----ADEMF 657

Query: 660 NKLMGTKADERFKFIQERASFIDDVGT 686
           + LMG   + R +FI++ A++  ++  
Sbjct: 658 SMLMGDDVEPRREFIEQNATYA-NIDA 683


>gi|119384573|ref|YP_915629.1| DNA topoisomerase IV subunit B [Paracoccus denitrificans PD1222]
 gi|119374340|gb|ABL69933.1| DNA topoisomerase IV subunit B [Paracoccus denitrificans PD1222]
          Length = 656

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 347/656 (52%), Positives = 447/656 (68%), Gaps = 12/656 (1%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            A   AS++Y ASSI +LEGLEPVR RPGMYIGGTDE+ALHHL +E++DN+MDE +AG+A
Sbjct: 7   PAADKASESYSASSIEVLEGLEPVRKRPGMYIGGTDERALHHLVAEILDNSMDEAVAGHA 66

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + IEV L  +  + + DNGRGIP++ HPKFP KS LE+IL TLHAGGKF    Y+ SGGL
Sbjct: 67  SRIEVELLADFSVVIRDNGRGIPIDPHPKFPGKSALEVILCTLHAGGKFSGDVYQTSGGL 126

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALSD + V VAR   ++ Q FSRG+PL P+EK     N+RGT +TF  D +
Sbjct: 127 HGVGASVVNALSDSMVVQVARNRELYEQCFSRGLPLGPVEKVGAAPNRRGTTVTFHADEQ 186

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     F  ARLL+M +SKAYL   V+  W  + +  E    P +  F+FPGGL  YL 
Sbjct: 187 IF-GHHRFKPARLLRMVKSKAYLFSGVEIRWKSEIDDGE---TPLEATFHFPGGLADYLG 242

Query: 275 TKLENRSLISSEIFTGKTE--KKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHE 331
             L N S  +   F G  +  +K    G V+WAI W    +  I SYCNT+ T EGGTHE
Sbjct: 243 EVLGNASTYADRPFAGSVDFKEKFNTPGKVDWAINWTPSRDGFIQSYCNTVPTPEGGTHE 302

Query: 332 SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           +G   A+ RGI+ Y E   NK+A  I  DDL+     ++S FIREPEF GQTK +L + +
Sbjct: 303 AGFWSAILRGIRAYGERVSNKKAAQITRDDLLAGGCALVSCFIREPEFVGQTKDRLATTE 362

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           AQR VE A+RD FD++L  +   A  +L++++ R+EERLRRR+++E  RK+A +KLRLPG
Sbjct: 363 AQRLVEGAVRDHFDNWLAADTKSAGAILDFLVLRAEERLRRRQEKETARKSATKKLRLPG 422

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL DCS     GTELFIVEGDSAGGSAK AR R+ QA+LPLRGKILNV  A S K+ +NQ
Sbjct: 423 KLVDCSATNREGTELFIVEGDSAGGSAKMARERTTQALLPLRGKILNVLGAASSKLGSNQ 482

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I DL QALG    S++  +DLRY+K+IIMTDADVDGAHIASLL+TFF+ +M  LI++ H
Sbjct: 483 EIADLCQALGVGMGSRFNVDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDKGH 542

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           L+L  PPL+R+TQG   +Y  D+  K+  L +    GKGKI++ RFKGLGEM A  LK+T
Sbjct: 543 LYLACPPLYRLTQGPHRIYVADDAEKESWLAK-GLGGKGKIDVQRFKGLGEMDAKDLKDT 601

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685
            M+   R L+RV I++      +T D + +LMG K + RF+FIQE A F D  ++ 
Sbjct: 602 TMNPRTRKLIRVSIDE--EEGGETGDLVERLMGKKPELRFQFIQENAQFADAEELD 655


>gi|15672887|ref|NP_267061.1| DNA gyrase subunit B [Lactococcus lactis subsp. lactis Il1403]
 gi|12723837|gb|AAK05003.1|AE006324_6 DNA gyrase subunit B [Lactococcus lactis subsp. lactis Il1403]
 gi|326406451|gb|ADZ63522.1| DNA gyrase subunit B [Lactococcus lactis subsp. lactis CV56]
          Length = 651

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 258/649 (39%), Positives = 381/649 (58%), Gaps = 23/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +D YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ IEV 
Sbjct: 12  ADEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIEVF 71

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGVG S
Sbjct: 72  IEPDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 130

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  L VTV +    + Q++ RG+    L+   +  ++RGT + F PDP+IF +  
Sbjct: 131 VVNALSTVLDVTVHKDGQKYYQEYHRGLVGDDLKIIGET-DRRGTTVHFVPDPEIFTETV 189

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD  +L    +  A+L+  ++   +  +E  EK     +  F++ GG+++Y++   EN+
Sbjct: 190 EFDFDKLATRVRELAFLNRGLRISLTDKREGNEKN----EVHFHYEGGIQSYVEYLNENK 245

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALT 339
           ++I       + E  G     VE A+ + +     + S+ N I T EGGTHE G R ALT
Sbjct: 246 TVIFEPAIFTEGEMDGI---AVEVAMQYTDTYHSVVMSFANNINTHEGGTHEQGFRTALT 302

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA+  +   +   ++  DD+      ++SV    P+F GQTKTKL + +    V 
Sbjct: 303 RVINNYAKQNKILKENEDNLTGDDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVTGIVN 362

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
               +    ++++NP  A K++E  I  S+ R+  ++ RE   +K+ +    LPGKLADC
Sbjct: 363 KLFAEALTTFMLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADC 422

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I  L
Sbjct: 423 SSNNPEQTELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSL 482

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    + Y     RY K++IMTDADVDGAHI +LLLT FY+ M  ++E  ++++  
Sbjct: 483 FTAMGTGFGADYDLSKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGYVYIAQ 542

Query: 577 PPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           PP++ I  G+++  Y       E+  Q+ L  +   G+ K  + R+KGLGEM   QL +T
Sbjct: 543 PPIYGIKVGSETKEYIQPGENQEKDLQEALARW-AQGRTKPTVQRYKGLGEMDDHQLWDT 601

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            MD   R + RV +        +     + LMG + + R +FI+  A +
Sbjct: 602 TMDPEHRLMARVSVED----AAEADKIFDMLMGDRVEPRREFIENNAQY 646


>gi|307352947|ref|YP_003893998.1| DNA gyrase,subunit B [Methanoplanus petrolearius DSM 11571]
 gi|307156180|gb|ADN35560.1| DNA gyrase, B subunit [Methanoplanus petrolearius DSM 11571]
          Length = 640

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 255/654 (38%), Positives = 372/654 (56%), Gaps = 24/654 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A +NY+AS+I +LEGLEPVR RP MYIG TD + LHHL  EV+DNA+DE +AG  + I V
Sbjct: 2   AQNNYNASNITVLEGLEPVRERPAMYIGSTDVRGLHHLVYEVVDNAVDEALAGVCDHIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G  TV DNGRGIPV+   +   KS LE+++T LHAGGKFD +TY++SGGLHGVG+
Sbjct: 62  TLGRDGTCTVEDNGRGIPVDIMEEQDGKSALEVVMTVLHAGGKFDKNTYQVSGGLHGVGV 121

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE----KVRNKRGTRITFRPDPKI 215
           SVVNALS+ L V V R   I+   F+RG   S L  ++        K GT+I+F+PD  I
Sbjct: 122 SVVNALSEFLQVEVFRDGYIYDMGFARGGLKSDLTSRKNAAPDAFEKHGTKISFKPDALI 181

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     FD   L    +  A+L+  +    S ++           + F + GG+  ++  
Sbjct: 182 FET-VTFDYDILSHRMRELAFLNRGITIEISDERS-------GYADIFNYEGGISEFVTY 233

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
            +  +  +  ++    T K       VE A+ +       + ++ N++ T EGGTH  G 
Sbjct: 234 LITGKETVHPDVIYFDT-KDAASMTEVEVALQYSTAYSETMMTFVNSVNTREGGTHLEGF 292

Query: 335 RVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR I K A+     + +S     +D+    V ++S+ +  P+F GQTK +L + + 
Sbjct: 293 RSALTRAINKSAKDNNLMKGMSESLKGEDVREGLVTVISLKVANPQFEGQTKMRLGNSNV 352

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
           +  V++ +      Y  +NP     ++   +  +  R   RK RE+ R+ + +    LPG
Sbjct: 353 KGIVDSLVYQSLTEYFEENPKVIQAIVSKAVGAARAREAARKARELARRKSTLESGGLPG 412

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS+     +E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A   +I  N 
Sbjct: 413 KLADCSERDPSKSEIYIVEGDSAGGSAKQGRSRQFQAILPLRGKILNVEKANPHRILKNA 472

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  L+ A+GC     +  E  RY  +I MTDADVDGAHI +LLLTFFY+ M +LIE+ +
Sbjct: 473 EIQTLISAIGCGFGESFDVEKARYHHIIFMTDADVDGAHICTLLLTFFYRYMPELIEKGY 532

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPLFR+ +G    YA  EE  ++ ++EF   G   + + R+KGLGEM A QL  T
Sbjct: 533 IYIAQPPLFRVAKGKNEKYAFSEEEMKRYVKEF---GDKGVSVQRYKGLGEMNADQLWHT 589

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            M    R L +V + +         +  +KLMG   + R +FI   +  + ++ 
Sbjct: 590 TMAPESRVLKQVSVIE----ASYADEIFSKLMGDDVEARKEFIIRHSKEVTNLD 639


>gi|227876546|ref|ZP_03994657.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC
           35243]
 gi|227842860|gb|EEJ53058.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC
           35243]
          Length = 671

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 251/672 (37%), Positives = 358/672 (53%), Gaps = 30/672 (4%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +   ++YDA+ I +LEGLE VR+RPGMYIG T E+ LHHL  EV+DN++DE +AGY + I
Sbjct: 5   EKPEEHYDAADITVLEGLEAVRVRPGMYIGSTGERGLHHLVYEVVDNSVDEALAGYCDHI 64

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           EV+L  +G + V DNGRGIPV  HP   ++ T+E+++T LHAGGKF  S+Y +SGGLHGV
Sbjct: 65  EVTLQADGSVKVCDNGRGIPVAEHP-TEHRPTVEVVMTILHAGGKFGGSSYAVSGGLHGV 123

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           GISVVNALS ++  TV R    +  +F  G  ++   ++ K   + GT   F PDP IF 
Sbjct: 124 GISVVNALSTKVLTTVKRDGYEWHVEFGNGGQVTKPLERGKETTETGTEQIFYPDPAIFE 183

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP----------------EKE 261
               FD   L    Q  A+L+  ++   + ++      G                     
Sbjct: 184 T-VEFDYETLRTRFQQMAFLNKGLRITITDERPNVTDEGDFVTGDADVDADSPKVGHRHV 242

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            + +  GL  Y+      +            E        +E A+ W       I +Y N
Sbjct: 243 SYCYENGLHDYVSFINSTKKSEVVHPEVIDFEATQDDSMALEIALQWTGAYSESIYTYAN 302

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
           TI T EGGTHE G R ALT  + KYA        +  ++  DD       ++SV +R P+
Sbjct: 303 TINTTEGGTHEEGFRSALTSLMNKYARSLGVLKDKDENLSGDDCREGLTAVISVKLRTPQ 362

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE- 437
           F GQTKTKL + +A+  V+  +      +   +P EA  +L         R   RK R+ 
Sbjct: 363 FEGQTKTKLGNTEARTFVQQTVYSQLGDWFDAHPTEAKAILLKAQSAQIARNAARKARDA 422

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
             RKTA+    +PGKL DCS   A   E+FIVEGDSAGGSA   R+ ++QA+LPLRGKIL
Sbjct: 423 TRRKTALDSFSMPGKLRDCSSRDASQCEIFIVEGDSAGGSAVAGRDPAHQAILPLRGKIL 482

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557
           NV  A  +K  +N++I  L+ A G      +    LRY K+++M DADVDG HIA+LLLT
Sbjct: 483 NVEKARLDKALDNKEIQSLITAFGTGIGEDFDLSKLRYHKIVLMADADVDGQHIATLLLT 542

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE--- 613
             ++ M  LIE+ H+FL +PPL+R+    +   + + ++ K K+L+   + G    +   
Sbjct: 543 LLFRYMKPLIEEGHVFLATPPLYRLKWSNRPHQFVYSDKEKDKLLDMGLEGGGRLPKEGG 602

Query: 614 ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKF 673
           I R+KGLGEM   +L ET MD   R L +V +++         ++ + LMG     R  F
Sbjct: 603 IQRYKGLGEMDPKELWETTMDPQVRLLKQVTMDE----AASADETFSLLMGEDVASRRSF 658

Query: 674 IQERASFIDDVG 685
           IQ  A  +  + 
Sbjct: 659 IQRNAQDVRFLD 670


>gi|221195249|ref|ZP_03568305.1| DNA gyrase, B subunit [Atopobium rimae ATCC 49626]
 gi|221185152|gb|EEE17543.1| DNA gyrase, B subunit [Atopobium rimae ATCC 49626]
          Length = 649

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 254/661 (38%), Positives = 370/661 (55%), Gaps = 26/661 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +    NY +  I +LEGLEPVR RPGMYIG T    LHHL  E++DN++DE +AG+   
Sbjct: 2   AKEKKSNYSSDDITVLEGLEPVRKRPGMYIGTTSSAGLHHLVWEIVDNSVDEALAGFCTK 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+V++  +  ++V DNGRGIPV+ HPK     TLE++LT LHAGGKFDNS Y++SGGLHG
Sbjct: 62  IKVTVHADNSVSVEDNGRGIPVDIHPK-KKIPTLEVVLTILHAGGKFDNSAYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+SVVNALS  +   V R   I+  +F RG     +++  K ++  GT ITF PD  IF
Sbjct: 121 VGVSVVNALSKRMIAEVKRDGKIYQMEFKRGKTTQKMKEIGKTKS-TGTTITFWPDDTIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                ++   L    Q  A+L+  +K   + ++E+     IP   E+ + GG+  +++  
Sbjct: 180 ETTT-YNFDTLRDRLQETAFLNKNLKIVLTDEREL-----IPRVVEYQYAGGIIDFVKYL 233

Query: 277 LENRSL----ISSEIFTGKTEKK--GTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGT 329
            + +++           G +E     +  G VE A+ W  E N    S+ N I T+EGG 
Sbjct: 234 NDEKTVLTGLSKPIYIEGSSEPDAPTSQMGEVEVAMQWNTEFNDRTLSFANDIYTEEGGM 293

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R ALT+ +  Y        ++   +  DD+      ++SV + +P+F GQTK KL
Sbjct: 294 HLEGFRTALTKAVNDYGTRQGILKEKDPKLTGDDIREGLTAVISVKLPDPQFEGQTKAKL 353

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RK 446
            S   +      +      YL ++P +A ++L+   + ++ RL  RK RE  R+  +   
Sbjct: 354 GSSYMRTLTNKIVSSGLAEYLEEHPNQAKEILKKATQAAKGRLAARKAREATRRKGLLES 413

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADCS      TELFIVEGDSAGGSAK AR+RS QAVLPLRGKILNV    + +
Sbjct: 414 ASLPGKLADCSVKDPEMTELFIVEGDSAGGSAKMARDRSIQAVLPLRGKILNVERVQAHR 473

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
             ++  I  L+ A+G     ++  E  RY K++IMTDADVDG+HI  LLLTFFY+ M  +
Sbjct: 474 ALSSDTITSLITAIGTGVGEEFNLEKARYHKIVIMTDADVDGSHIRILLLTFFYRYMKPM 533

Query: 567 IEQKHLFLISPPLFRIT-QGTKS-VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
           I+  ++++  PPL++I  +G K   Y + +E     +E  +     K  + R+KGLGEM 
Sbjct: 534 IDAGYIYVAQPPLYQIKAKGKKHGKYIYTDEEL--AVEAKQFEDSSKYTVQRYKGLGEMD 591

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
             QL  T M+   R LL+V I+  +        ++  LMG + ++R  FIQ  A  +  +
Sbjct: 592 PEQLWSTTMEPKNRILLKVTIDDAM----AADRAVADLMGNQVEKRKDFIQTHAKDVRFL 647

Query: 685 G 685
            
Sbjct: 648 D 648


>gi|261207615|ref|ZP_05922300.1| gram positive topoisomerase IV [Enterococcus faecium TC 6]
 gi|260077998|gb|EEW65704.1| gram positive topoisomerase IV [Enterococcus faecium TC 6]
          Length = 681

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 249/657 (37%), Positives = 361/657 (54%), Gaps = 33/657 (5%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +  ++ Y+ SSI++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DE ++GY + 
Sbjct: 2   AKKVNNEYNDSSIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGSE 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+V++  +  +TV D+GRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHG
Sbjct: 62  IDVTIHEDNSITVADSGRGMPVGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHG 119

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           VG SVVNALS  L VT+ R    + QKF  G  P   L+K  K +   GT + F PD  I
Sbjct: 120 VGASVVNALSKWLTVTIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTTVHFLPDDTI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     F    L +  +  A+L   VK   S  +       +P KE F++  G+K ++  
Sbjct: 180 FSTT-KFSYEILAERLRESAFLLKGVKISLSDLR-----GEVPVKEIFHYEEGIKEFVDY 233

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
             E +  ++  +     EK+G     VE A  + +   E   S+ N + T +GGTHE+G+
Sbjct: 234 LNEEKDTLTPVV-YFSGEKEGI---EVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGM 289

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390
           + A+T+   +YA       +R  ++   D       +LS+ + E   +F GQTK KL + 
Sbjct: 290 KAAMTKSYNEYARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTP 349

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---L 447
            A+  V+N + +    YL +N   +  L+   I+  E R   RK RE +R    RK    
Sbjct: 350 VARTVVDNVISEQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGES 409

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            L GKL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I
Sbjct: 410 LLSGKLTPAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDI 469

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N++I  ++  +G     ++  ED  Y+KVIIMTDAD DGAHI  LLLTFFY+ M  LI
Sbjct: 470 LKNEEINTMIYTIGAGVGPEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLI 529

Query: 568 EQKHLFLISPPLFRITQG---TKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
           E   +++  PPL+++++G    + + YA  ++    ++++  K       + R+KGLGEM
Sbjct: 530 EAGKVYIALPPLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGK----GYMLQRYKGLGEM 585

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            A QL ET MD   RTL+RV I+         +  +  LMG K + R K+I+    F
Sbjct: 586 NAEQLWETTMDPTSRTLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIENHVQF 638


>gi|294674979|ref|YP_003575595.1| DNA gyrase subunit B [Prevotella ruminicola 23]
 gi|294471706|gb|ADE81095.1| DNA gyrase, B subunit [Prevotella ruminicola 23]
          Length = 658

 Score =  609 bits (1569), Expect = e-172,   Method: Composition-based stats.
 Identities = 258/664 (38%), Positives = 381/664 (57%), Gaps = 28/664 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +   NY AS+I++LEGLE VR RP MYIG   EK LHHL +E +DN++DE +AGY   IE
Sbjct: 7   NQEQNYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLVNETVDNSIDEAMAGYCTHIE 66

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+++ +  +TV DNGRGIPV+ H K    S LE+++T LHAGGKFD  +Y++SGGLHGVG
Sbjct: 67  VTINEDNSITVQDNGRGIPVDEHEKMHK-SALEVVMTVLHAGGKFDKGSYKVSGGLHGVG 125

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +S VNALS  +   V R   I+ Q++ +G PL  ++      +K GTR  F PD  IF  
Sbjct: 126 VSCVNALSTHMMSQVFRNGHIYQQEYEKGKPLYDVKIVGDT-DKTGTRQQFWPDGSIFTT 184

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              +    + K  +  AYL+  +    +  +   E+  + + E F+   GLK +++    
Sbjct: 185 -TEYKYDIIAKRMRELAYLNAGITITLTDLR-PDEEGNLRQPEVFHAKEGLKEFVRYVDR 242

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           +R+ I  +    KTEK G     +E A+ +  +    I SY N I T EGGTH +G R+A
Sbjct: 243 HRTSIIGDPICLKTEKDGVP---IEVALLYNSDYSENIHSYVNNINTIEGGTHLTGFRIA 299

Query: 338 LTRGIKKYAELTQ------NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           L R +KKYA+          K  I +  DD       I+SV + EP+F GQTKTKL + +
Sbjct: 300 LARTLKKYADEDDQLRKQIEKAKIEVAQDDFREGLTAIISVKVAEPQFEGQTKTKLGNSE 359

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLP 450
               V+ A+ +   +YL +NP EA  + E VI  +  R+  RK RE  ++   +    LP
Sbjct: 360 VNGAVQKAVGEAMTNYLEENPKEAHTICEKVILAATARIAARKARESVQRKNPMTGGGLP 419

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS       E+F+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV      ++   
Sbjct: 420 GKLADCSNKDPKECEIFLVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKVQWHRVFEA 479

Query: 511 QQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           + +M+++Q++G R             + LRY+K+IIMTDADVDG+HI +L++T FY+ M 
Sbjct: 480 ESVMNIIQSIGVRFGVDGEDSKDANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRFMP 539

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF--KKHGKGKIEISRFKGLGE 622
            +I+  HL++ +PPL++ T    S Y + E+ +Q  ++++         +   R+KGLGE
Sbjct: 540 QVIQGGHLYIATPPLYKCTYKKTSEYCYTEQQRQAFIDKYVAGNGDDKGLHTQRYKGLGE 599

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           M   QL ET M+   R L +V I     +  +  +  + LMG   + R +FI++ A++  
Sbjct: 600 MNPEQLWETTMNPENRLLKQVTIE----NAAEADEIFSMLMGDDVEPRREFIEKNATYA- 654

Query: 683 DVGT 686
           ++  
Sbjct: 655 NIDA 658


>gi|239616758|ref|YP_002940080.1| DNA gyrase, B subunit [Kosmotoga olearia TBF 19.5.1]
 gi|239505589|gb|ACR79076.1| DNA gyrase, B subunit [Kosmotoga olearia TBF 19.5.1]
          Length = 631

 Score =  609 bits (1569), Expect = e-172,   Method: Composition-based stats.
 Identities = 255/649 (39%), Positives = 382/649 (58%), Gaps = 24/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S +Y+A SI+IL+GLEPVR RPGMYIG T +  LHHL  EV+DN++DEV+ GY + I+++
Sbjct: 2   STDYNAQSIKILKGLEPVRQRPGMYIGSTGKAGLHHLIYEVVDNSIDEVVGGYCDYIKIT 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +G ++V DNGRGIPV+ HP+    S LE+++TTLHAGGKF   +Y+ISGGLHGVG+S
Sbjct: 62  IFEDGSVSVWDNGRGIPVDIHPE-TGTSALEVVMTTLHAGGKFSKDSYKISGGLHGVGVS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ + V V R   I+ Q++ RG P +P+E   +  +KRG+ + F+PD  +     
Sbjct: 121 VVNALSEWMEVKVYRDGKIYRQRYERGKPTTPVEIIGET-DKRGSLVAFKPD-SLVFTTT 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   L    +  A+L+ RV   +   +   EK        F+F GG+  +++     +
Sbjct: 179 DFDFDILESRFKELAFLNPRVTIEFED-RRYDEKRV------FHFEGGIVEFVKYLNRKK 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + I+ E F  +          ++ A+ +       I ++ N I T EGGTH +G +  LT
Sbjct: 232 TAINKEPFYIEGTYNDV---KIQLAMQYTNAYDENILTFVNNIKTVEGGTHLTGFKTVLT 288

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           + +  YA        +  ++  +D+      +LSVF++EP+F GQTK KL + +    V 
Sbjct: 289 KMMNDYARKLNVLKDKDPNLQGEDVREGLTAVLSVFVKEPQFEGQTKAKLGNEEVYEAVI 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADC 456
             LRD        +  E   ++   ++ ++ R+  +K    + RK A+    LPGKLADC
Sbjct: 349 KVLRDKLPEVFDYHTKELKAIIIKALDAAKARVAAKKAREMIRRKNALENTTLPGKLADC 408

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +      TELFIVEGDSAGGSAKQAR+R  QA+LPLRGKILNV  +  EK+  N+QI ++
Sbjct: 409 TSTDLETTELFIVEGDSAGGSAKQARDREFQAILPLRGKILNVEKSSFEKLLKNEQINNI 468

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G       + E+LRY K+IIMTDADVDGAHI +LLLT FY+ M  LI   H+++  
Sbjct: 469 IVAIGTGIGDDCKLENLRYGKIIIMTDADVDGAHIRTLLLTLFYRYMTPLINAGHIYIAQ 528

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
            PL+++    K  Y + +E  ++ L   K +   K+ I R+KGLGEM   QL ET M+  
Sbjct: 529 APLYKVELNRKKYYFYSDEELEEFL---KNNDGKKVSIQRYKGLGEMNPDQLWETTMNPE 585

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            R L+++E+      +++       LMG++ +ER +FI+  A  I ++ 
Sbjct: 586 SRKLIKIEMED----VEEADRVFTILMGSEVEERREFIERHALMITELD 630


>gi|73747960|ref|YP_307199.1| DNA gyrase, subunit B [Dehalococcoides sp. CBDB1]
 gi|147668656|ref|YP_001213474.1| DNA gyrase subunit B [Dehalococcoides sp. BAV1]
 gi|73659676|emb|CAI82283.1| DNA gyrase, subunit B [Dehalococcoides sp. CBDB1]
 gi|146269604|gb|ABQ16596.1| DNA gyrase subunit B [Dehalococcoides sp. BAV1]
          Length = 642

 Score =  609 bits (1569), Expect = e-172,   Method: Composition-based stats.
 Identities = 258/659 (39%), Positives = 380/659 (57%), Gaps = 24/659 (3%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
           D+      + S+ Y AS I++LEGL  VR RPGMYIG TD++ LHHL  E++ N++DE +
Sbjct: 3   DANKAKPGANSETYTASDIQVLEGLAAVRKRPGMYIGSTDQRGLHHLVYEIVYNSVDEAM 62

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AG  + I+V +  +G ++V DNGRGIPV+ H      S LE ++T LHAG KF   TY++
Sbjct: 63  AGVCDRIKVIMFKDGSVSVEDNGRGIPVDIHS-TTKISALETVMTVLHAGAKFGGKTYQV 121

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG SVVNALS+   V V R   I+ Q + RG P +PLE+   V    GT   F 
Sbjct: 122 SGGLHGVGASVVNALSEWTTVKVRRNGKIYQQSYLRGKPSTPLEEVG-VSEGSGTTTIFM 180

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
            D +IF     +D   L    +  AYL+  ++     +K   E+        +YF GG+ 
Sbjct: 181 ADSQIFSTT-EYDFETLTDRLREIAYLNKGLEVYIYDEKSDQERT-------YYFEGGIT 232

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGT 329
            +++    NR +   +      +   T    +E AI + +   +   ++ N + T +GGT
Sbjct: 233 GFVRHLNRNREVRHRQPIYITKKSDSTI---LEVAIQYNDGYSDSTLTFANCVNTVDGGT 289

Query: 330 HESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R ALTR    YA  ++  +    +++ DD+    V I+SV + EP+F GQTK KL
Sbjct: 290 HLTGFRSALTRAFNDYAHKSKFLKDTDPNLMGDDVREGIVAIVSVKLPEPQFEGQTKGKL 349

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
            +++ +  VE+A+ +    YL ++P +  ++LE  I  ++ R   RK R+ + RK+A+  
Sbjct: 350 GNIEIKSFVESAVAEQLSLYLEEHPDDTKRILEKCITAAKAREAARKARDLIIRKSALDT 409

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADCS+  A   ELF+VEGDSAGGSAKQ RNR  QA+LPLRGKILNV  A  +K
Sbjct: 410 GTLPGKLADCSERDASLCELFLVEGDSAGGSAKQGRNRRFQAILPLRGKILNVEKASPDK 469

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           +  +++I  ++ AL     + +    LRY ++++MTDADVDG+HI +LLLTFF++ M  L
Sbjct: 470 MLAHEEIRAIITALAAGIDNDFDPSKLRYNRLVLMTDADVDGSHIRTLLLTFFFRHMPRL 529

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           I + HLF+  PPL++I  G+   + +++  K+ IL + K     K++I R+KGLGEM A 
Sbjct: 530 ITESHLFIAQPPLYKIKIGSTEHWVYNDAEKEAILAQTKST---KVDIQRYKGLGEMSAE 586

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           QL  T MD   RTLL V++              N LMG +   R  FIQ  +  + ++ 
Sbjct: 587 QLWRTTMDPASRTLLEVKVED----AAKADQIFNLLMGGEVAPRKAFIQSHSRTVKNLD 641


>gi|326802621|ref|YP_004320439.1| DNA gyrase, B subunit [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650211|gb|AEA00394.1| DNA gyrase, B subunit [Aerococcus urinae ACS-120-V-Col10a]
          Length = 660

 Score =  609 bits (1569), Expect = e-172,   Method: Composition-based stats.
 Identities = 242/671 (36%), Positives = 376/671 (56%), Gaps = 20/671 (2%)

Query: 15  QSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKAL 74
               ++    +  +  +       + +  Y+AS I++LEGLE VR RPGMYIG T    L
Sbjct: 2   AENQANNSEHEQPQNHNPKDKNQPNQAGEYNASQIQVLEGLEAVRKRPGMYIGSTGAPGL 61

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           HHL  E++DN++DE +AGYA+ I++ ++ +G +TV+DNGRGIPV+   K   +  +E + 
Sbjct: 62  HHLVWEIVDNSIDEALAGYADKIDIKIESDGSITVIDNGRGIPVDIQEK-TGRPAVETVF 120

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKF    Y++SGGLHGVG SVVNALS +L V V R   I+ Q++SRG  +S L+
Sbjct: 121 TVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTKLRVEVYRDGKIYQQEYSRGHIVSDLK 180

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
              +  +K GT + F  DP+IF D   +D   L K  +  A+L+  +       +E    
Sbjct: 181 VVGE-SDKTGTVVNFVADPEIFTDTTDYDFQTLNKRVRELAFLNKGLHITLEDRREED-- 237

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313
               ++  + + GG+K Y+Q   EN+ ++  E    + +        VE A  +      
Sbjct: 238 ---SQEVAYQYEGGIKEYVQYLNENKEILFEEPVYLEGQMDDI---EVEVAFQYTAGYHS 291

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
              S+ N I T EGGTHESG++ ALTR I  YA       ++  ++  +D+      I+S
Sbjct: 292 NFMSFANNIHTFEGGTHESGIKTALTRTINDYARSQNLLKEKDDNLSGEDVREGLTLIVS 351

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           +    P+F GQTK KL + + +   +       + +L + P  A ++++  I  S+ R  
Sbjct: 352 IRHPNPQFEGQTKMKLGNSEVRTITDRLFGQHLEQFLYETPNIARQIVDKGILASKARQA 411

Query: 432 RRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            ++ RE+  +K+ +    LPGKLADCS  +    ELFIVEG+SAGGSAK  R+R  QA+L
Sbjct: 412 AKRAREMTRKKSGLEISNLPGKLADCSSRVPEECELFIVEGNSAGGSAKLGRDRHFQAIL 471

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           P+RGKILNV  A  ++I  N++I  L  A+G    + +     RY K++IMTDADVDGAH
Sbjct: 472 PIRGKILNVEKASMDRILANEEIRSLFTAMGTGWGNDFDVTKARYHKLVIMTDADVDGAH 531

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           I +LLLT  Y+ M  L++  ++++  PPL+++ QG    Y + ++     ++   +  + 
Sbjct: 532 IRTLLLTLIYRYMRPLLDAGYIYIAVPPLYQVRQGKNVHYVNSDQELNDYMKTLAE--RP 589

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADER 670
           +  + R+KGLGEM A QL ET MD  +R +L+V ++      ++   +I+ LMG     R
Sbjct: 590 RPAVQRYKGLGEMDAEQLWETTMDPTQRQMLQVTVDD----AQEADRNISMLMGDLVAPR 645

Query: 671 FKFIQERASFI 681
             FI+  A++ 
Sbjct: 646 RDFIENNATYA 656


>gi|160944260|ref|ZP_02091489.1| hypothetical protein FAEPRAM212_01769 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444442|gb|EDP21446.1| hypothetical protein FAEPRAM212_01769 [Faecalibacterium prausnitzii
           M21/2]
          Length = 664

 Score =  609 bits (1569), Expect = e-172,   Method: Composition-based stats.
 Identities = 241/671 (35%), Positives = 370/671 (55%), Gaps = 31/671 (4%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +   A+      Y+AS I++L+GLE VR RPGMYIG T E+ LHHL  E++DNA+DE +A
Sbjct: 7   TSTNADTVTDHEYNASEIQVLKGLEAVRKRPGMYIGSTGERGLHHLVYEIVDNAIDEALA 66

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF--DNSTYE 149
           GY + IEV +  +  + V DNGRGIPV+          + ++ T LHAGGKF  +NS Y+
Sbjct: 67  GYCDHIEVKILKDNIIQVTDNGRGIPVDIQA-DTGLPAVTVVYTILHAGGKFGGENSGYK 125

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRIT 208
           ++GGLHGVG SVVNA S+ L V V R    + Q F RG P   L+    V     GTR+T
Sbjct: 126 VAGGLHGVGASVVNACSEWLTVNVRRDGKEYEQTFRRGDPDGDLKCIGTVAEGVTGTRVT 185

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------EIAEKYGIPEK 260
           F+PDP++F D   +D   L K  + +++L+  VK   + ++        +  E       
Sbjct: 186 FKPDPEMFKDTTVYDFDTLEKRLREESFLNAGVKITLTDERQLYTPVLEDGQEGDPCYRS 245

Query: 261 EEFYFPGGLKTYLQTKLENR--SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           E   + GG+K+++    E R   ++   +   K +     RG  E A+ +       + S
Sbjct: 246 EVMCYEGGIKSFVTYLGEKRKLEVLHPNVIYLKGQTD---RGVAEIALQYNSSYNELLLS 302

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N + T +GGTHE G + +LTR    Y         +  ++   D+    + ++SV ++
Sbjct: 303 FANNVNTPDGGTHEEGFKASLTRVFNDYGRSHGLLKDKDENLSGADVREGLICVISVKLQ 362

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRK 434
           E EF GQTK KL + + +  V N +      +  +NP  A  +  +           ++ 
Sbjct: 363 EAEFEGQTKAKLGNTEIRTLVSNMVYSKLMEFFEENPGVAKAIFEKATQAARARAAAKKA 422

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +  V RK+A+   R+PGKLADC +     TE+FIVEGDSAGGSAK  R+ + QA+LPL G
Sbjct: 423 RELVRRKSALETSRMPGKLADCREKDPSRTEIFIVEGDSAGGSAKMGRDSAIQAILPLWG 482

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           K+LNV  A ++KI  N ++M +V ALGC    ++    LRY+KV IM DADVDG+HI +L
Sbjct: 483 KMLNVEKARADKIYGNDKLMPVVLALGCGIGDEFDISKLRYDKVFIMADADVDGSHICTL 542

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M  LIEQ H+++  PPLF++ +G    YA+++     + +E         ++
Sbjct: 543 MLTFFFRYMRPLIEQGHVYVAQPPLFKVQKGNTIKYAYNDAEMAILSQEMP-----GAKV 597

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
           +R+KGLGEM   QL ET M+ + R ++++ I       +   ++   LMG + + R +FI
Sbjct: 598 NRYKGLGEMNPEQLWETTMNPDNRVIVQITIED----AEKADEAFTILMGDQVEPRRRFI 653

Query: 675 QERASFIDDVG 685
           +  A +   + 
Sbjct: 654 ETNAQYAK-LD 663


>gi|110679338|ref|YP_682345.1| DNA topoisomerase IV subunit B [Roseobacter denitrificans OCh 114]
 gi|109455454|gb|ABG31659.1| DNA topoisomerase IV, B subunit [Roseobacter denitrificans OCh 114]
          Length = 682

 Score =  609 bits (1569), Expect = e-172,   Method: Composition-based stats.
 Identities = 342/667 (51%), Positives = 447/667 (67%), Gaps = 10/667 (1%)

Query: 22  KLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEV 81
           +         +   ++ + + +YDASSI +LEGLEPVR RPGMYIGGTDE+ALHHL +EV
Sbjct: 22  QTNTKKSSGMNDLLSSGTEATDYDASSIEVLEGLEPVRKRPGMYIGGTDERALHHLVAEV 81

Query: 82  IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141
           +DN+MDE +AG+A  IEV L  +  +T+ DNGRGIP++ HPKFP+KS LE+IL TLHAGG
Sbjct: 82  LDNSMDEAVAGHATRIEVELHEDYAITIRDNGRGIPIDPHPKFPDKSALEVILCTLHAGG 141

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KF    YE SGGLHGVG SVVNALSD + V VAR   +F Q+FSRG+PL P+++    +N
Sbjct: 142 KFSGKAYETSGGLHGVGASVVNALSDSMVVQVARNKQLFEQRFSRGVPLGPVQELGPTQN 201

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           +RGT +TF  D +IFG    F  ARL    +SKAYL   V+  W   K        P++ 
Sbjct: 202 RRGTTVTFHADAEIFGA-HRFKPARLFNSIRSKAYLFSGVEIRW---KSAIADGDTPQEA 257

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTE--KKGTHRGTVEWAIAW-CEENPEITSY 318
            F+FPGGL  YL+  L   +  +   F G  +  +K    G VEWAI W    +  I SY
Sbjct: 258 TFHFPGGLSDYLRETLGTATTYADNPFAGSVDFKEKFGEPGKVEWAINWTPSRDGFIQSY 317

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPE 378
           CNT+ T EGGTH +G   A+ +GIK Y EL+  K+A  I  +DL      ++S FI EP 
Sbjct: 318 CNTVPTPEGGTHVAGFWAAILKGIKAYGELSNTKKAAQITREDLTSGGCALVSCFIAEPA 377

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
           F GQTK +L +  A +  E A+RD FD++L  +   A  +L++++ R+EERLRRR+++E 
Sbjct: 378 FVGQTKDRLSTEAAAKMTEGAVRDHFDNWLAADTKSAGAILDFLVLRAEERLRRRQEKET 437

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK+A +KLRLPGKL DC+     GTELFIVEGDSAGGS K ARNR+ QA+LPL+GKILN
Sbjct: 438 ARKSATKKLRLPGKLTDCTSKDRAGTELFIVEGDSAGGSGKGARNRNTQALLPLKGKILN 497

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A S K+  N +I DL +ALGC   +++  +DLRYEK+IIMTDADVDGAHIA+LL+TF
Sbjct: 498 VLGAASSKLGTNAEISDLCEALGCGMGTKFNLDDLRYEKIIIMTDADVDGAHIAALLMTF 557

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY +M  LI+  HL+L  PPLFR+TQG K VY   EE K   LE+    GKGKI++SRFK
Sbjct: 558 FYTQMRPLIDAGHLYLACPPLFRLTQGAKRVYCLTEEEKNDWLEK-GLGGKGKIDVSRFK 616

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           GLGEM A  LKET MD   R L+RV I++D+    +T D + +LMG K + RF++IQE A
Sbjct: 617 GLGEMDAKDLKETTMDPTTRKLIRVSIDEDV--PGETGDLVERLMGKKPELRFQYIQENA 674

Query: 679 SFIDDVG 685
            F++++ 
Sbjct: 675 KFVEELD 681


>gi|6502512|gb|AAF14340.1|U86303_1 topoisomerase IV ParE subunit [Caulobacter crescentus CB15]
 gi|2749947|gb|AAC38044.1| DNA topoisomerase IV ParE subunit [Caulobacter crescentus CB15]
          Length = 667

 Score =  609 bits (1569), Expect = e-172,   Method: Composition-based stats.
 Identities = 368/657 (56%), Positives = 460/657 (70%), Gaps = 14/657 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
               SA   Y A+ I +LEGLEPVR RPGMYIGGTDE+ALHHLF+EV+DN+MDE +AG+A
Sbjct: 18  SKTASAPGEYSAADIEVLEGLEPVRKRPGMYIGGTDERALHHLFAEVLDNSMDEAVAGFA 77

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             IEV LD +GFL+V D+GRG+PV+ HPK+P KS LE+I+T LHAGGKF    YE SGGL
Sbjct: 78  KTIEVKLDADGFLSVKDDGRGMPVDPHPKYPGKSALEVIMTVLHAGGKFTGKAYETSGGL 137

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS+ + VTV R      Q FSRG PL P+++    +  +GT + F+PD +
Sbjct: 138 HGVGASVVNALSERVEVTVWRDGFEHLQVFSRGKPLGPIQQVAPSKK-KGTMVRFKPDDE 196

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IFG+   F  ARL +M +SKAYL   V+  WSCD         PE   F+FP GL  +L 
Sbjct: 197 IFGEGTNFKPARLYRMARSKAYLFRGVQIKWSCDPSRIHDQTPPEA-TFHFPNGLADFLA 255

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-----EENPEITSYCNTILTDEGGT 329
            + +  + I+ E F G+ E++G   G VEWA+ W      E +  + SYCNT+ T EGGT
Sbjct: 256 ERTKGLTTITPESFAGRIERQGEA-GAVEWAVTWTPQGFGEHDGFMQSYCNTVPTPEGGT 314

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           HESG R ALTRG+K YAEL   KR   I +DD++  A  ++SVFI+ PEF GQTK KL +
Sbjct: 315 HESGFRAALTRGLKAYAELKGEKRGTIITADDVVAQAGALISVFIKNPEFQGQTKEKLST 374

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
            +AQR VE +LRDPFD +L  +P  A  LLE+VIER+EERL+RRK +EV+R +A RKLRL
Sbjct: 375 SEAQRFVEASLRDPFDLWLSSSPKNAQALLEFVIERAEERLKRRKDKEVSRASATRKLRL 434

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC+ +   G ELFIVEGDSAGGSAKQAR+R  QA+LPLRGKILNVASA  EK   
Sbjct: 435 PGKLADCAGSAVDGAELFIVEGDSAGGSAKQARDRKYQAILPLRGKILNVASASGEKFTA 494

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N+++ DL+ ALG +  ++YREEDLRYE++IIMTDADVDGAHIASLL+TFFY+ M +LI  
Sbjct: 495 NKELSDLMLALGAQAGAKYREEDLRYERIIIMTDADVDGAHIASLLITFFYRTMPELIRG 554

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
            HLFL  PPL+R+  G KS YA D+ HK+++L    K    K EI RFKGLGEM+ASQLK
Sbjct: 555 GHLFLALPPLYRLAHGGKSEYARDDAHKEELLATVFK--GKKPEIGRFKGLGEMMASQLK 612

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID-DVG 685
           ET MD  KRTL RV + +   S++D    +  LMG K + RF+FIQE A F   D+ 
Sbjct: 613 ETTMDPKKRTLARVTLPRHEESVED---LVETLMGRKPELRFRFIQENAEFASADLD 666


>gi|313205819|ref|YP_004044996.1| DNA gyrase subunit b [Riemerella anatipestifer DSM 15868]
 gi|312445135|gb|ADQ81490.1| DNA gyrase subunit B [Riemerella anatipestifer DSM 15868]
 gi|315022785|gb|EFT35809.1| DNA gyrase subunit B [Riemerella anatipestifer RA-YM]
          Length = 644

 Score =  608 bits (1568), Expect = e-172,   Method: Composition-based stats.
 Identities = 252/656 (38%), Positives = 383/656 (58%), Gaps = 22/656 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           ++  Y ASSI+ LEG+E VR+RP MYIG    + LHHL  EV+DN++DE +AGY + I V
Sbjct: 2   SNKQYTASSIQSLEGIEHVRLRPSMYIGDVGVRGLHHLVYEVVDNSIDEALAGYCDTITV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++     ++V DNGRGIPV+ H K   KS LE+++T + AGGKFD  +Y++SGGLHGVG+
Sbjct: 62  TIHEGNAISVKDNGRGIPVDFHEK-EQKSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           S VNALS     TV R+  I+ QK+S+G  L  +++     + RGT + F+PD  IF + 
Sbjct: 121 SCVNALSTSTIATVYREGKIYQQKYSKGRALEDVQEIG-TTDYRGTEVFFQPDDSIFNEL 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             ++   L    +  A+L+  +    + ++   EK      E F   GGLK +++    N
Sbjct: 180 V-YNYDTLSARLRELAFLNKGINITITDERVKDEKG-EFLTETFLSEGGLKEFVEFIDGN 237

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVAL 338
           R  I   +   + E+       VE A+ +     E    Y N I T EGGTH +G R AL
Sbjct: 238 RESIMENVIFMEGERDDIP---VEVAMRYNTSFTENLHSYVNNINTHEGGTHLTGFRRAL 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +KKYA+      K  + I  DD       ++SV + EP+F GQTKTKL + +    V
Sbjct: 295 TRTLKKYADDLGIPQKEKVEITGDDFREGLTAVISVKVMEPQFEGQTKTKLGNSEVSGAV 354

Query: 397 ENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           +  + +   ++L +NP EA ++++  V+     +  ++ +  V RK+ +    LPGKL+D
Sbjct: 355 DKIVGEMLTNFLEENPTEAKQIVQKVVLAAKARQAAKKAREMVQRKSPMGGAGLPGKLSD 414

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS      +E+F+VEGDSAGG+AKQ R+R  QA+LPLRGKILNV  +   K+  N++I +
Sbjct: 415 CSSKDPAESEIFLVEGDSAGGTAKQGRDRHFQAILPLRGKILNVEKSMIHKVYENEEIKN 474

Query: 516 LVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           +  ALG    ++   +      LRY K++IMTDAD+DG+HI++L+LTFF++ M +LIEQ 
Sbjct: 475 IYTALGVSVGTEEDSKALNLSKLRYHKIVIMTDADIDGSHISTLILTFFFRYMKELIEQG 534

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++ SPPL+ + +G K VYA +E+ +++   E    GKG +E+ R+KGLGEM   QL E
Sbjct: 535 YVYIASPPLYLLKKGNKKVYAWNEKEREEKTLEMSADGKG-VEVQRYKGLGEMNPEQLWE 593

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           T ++   R L +V I        +     + LMG +   R +FI++ A +   +  
Sbjct: 594 TTLNPENRILKQVNIENAG----EADRIFSMLMGDEVPPRREFIEKNAVYAK-IDA 644


>gi|39935552|ref|NP_947828.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris CGA009]
 gi|39649405|emb|CAE27927.1| DNA topoisomerase [Rhodopseudomonas palustris CGA009]
          Length = 683

 Score =  608 bits (1568), Expect = e-172,   Method: Composition-based stats.
 Identities = 389/682 (57%), Positives = 496/682 (72%), Gaps = 8/682 (1%)

Query: 8   LFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIG 67
           L ++   +S     +       P +PA  +  A D Y A+ I +LEGLEPVR RPGMYIG
Sbjct: 5   LKASSKSKSGDDLFEGAPKSAAPKAPAKPSG-AEDGYTAADIEVLEGLEPVRRRPGMYIG 63

Query: 68  GTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNK 127
           GTDEKALHHLF+EVIDN+MDE +AG+A  IEV L  +GFLTV DNGRGIPV+ HPKFP K
Sbjct: 64  GTDEKALHHLFAEVIDNSMDEALAGHATFIEVELTADGFLTVSDNGRGIPVDPHPKFPKK 123

Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187
           S LE+I+ TLHAGGKFD+  YE SGGLHGVG+SVVNALS  L V VAR   +    F RG
Sbjct: 124 SALEVIMCTLHAGGKFDSKVYETSGGLHGVGVSVVNALSSRLEVEVARGQQLHRMVFERG 183

Query: 188 IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247
            P   LE   KV N+RGTR+ F+PD +IFG KA F   RL KM +SKAYL G VK  W C
Sbjct: 184 HPKGKLESLGKVNNRRGTRVRFKPDTEIFGAKAAFKPQRLFKMARSKAYLFGGVKIRWKC 243

Query: 248 DKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
           D E+ +    +P ++EF+FPGGLK +L   + N +L+  +IF GK+ + G H      A 
Sbjct: 244 DPELLKGIEDVPAEDEFHFPGGLKDFLGAAIHNDTLVHPDIFAGKSGRNGAHGACEWAAA 303

Query: 307 AWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMIS 365
              + +  ++SYCNT+ T +GGTHESGLR AL RG+K +AE     KRA SI S+D+M+ 
Sbjct: 304 WTADADGFLSSYCNTVPTPDGGTHESGLRSALLRGLKDHAERAGQGKRASSITSEDVMVG 363

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
           A  +LSVF+REPEF GQTK +L + +AQ+ VE A++DPFDH+L  NP++A KLL++VIER
Sbjct: 364 AAIMLSVFVREPEFQGQTKDRLATAEAQKIVEQAIKDPFDHWLSGNPVQANKLLDFVIER 423

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
           +EERLRRR+++E++RKTA++KLRLPGKLADC+   A G+ELFIVEGDSAGGSAKQAR+RS
Sbjct: 424 AEERLRRRQEKEISRKTAVKKLRLPGKLADCTSTAAEGSELFIVEGDSAGGSAKQARDRS 483

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545
            QAVLPLRGKILNVASAG +K+  N Q+ DL+QALG  T   YREEDLRY ++IIMTDAD
Sbjct: 484 TQAVLPLRGKILNVASAGKDKVVANAQLSDLIQALGVSTGVNYREEDLRYSRIIIMTDAD 543

Query: 546 VDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605
           VDGAHIASLL+TFFY++M  LI++ HL+L  PPL+R+T G K+VYA D+ HK+++L++ +
Sbjct: 544 VDGAHIASLLITFFYRQMPKLIDEGHLYLAVPPLYRLTHGAKTVYARDDAHKEELLKK-E 602

Query: 606 KHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT 665
            +   K+E+ RFKGLGEM+ +QLKET MD  KRT+LRV +  D      T +S+ +LMGT
Sbjct: 603 FNANAKVEVGRFKGLGEMMPAQLKETTMDPAKRTMLRVVLLPDDRDG--TANSVERLMGT 660

Query: 666 KADERFKFIQERASFIDD--VG 685
           KA+ RF FI E+A F  D  + 
Sbjct: 661 KAEARFAFISEKAEFASDELLD 682


>gi|260910948|ref|ZP_05917589.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella sp. oral
           taxon 472 str. F0295]
 gi|260634939|gb|EEX52988.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella sp. oral
           taxon 472 str. F0295]
          Length = 657

 Score =  608 bits (1568), Expect = e-172,   Method: Composition-based stats.
 Identities = 262/668 (39%), Positives = 395/668 (59%), Gaps = 30/668 (4%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
            NQ+  +NY AS+I++LEGLE VR RP MYIG   EK LHHL +E +DN++DE +AGY +
Sbjct: 3   ENQNNENNYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLVNETVDNSIDEAMAGYCS 62

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            IEV+++ +  +TV D+GRGIPV+ H K    S LE+++T LHAGGKFD  +Y++SGGLH
Sbjct: 63  SIEVTINEDNSITVQDDGRGIPVDEHEKLHK-SALEVVMTVLHAGGKFDKGSYKVSGGLH 121

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+S VNALS  +   V R   I+ Q++  G PL P++   +  +KRGTR  F PDP I
Sbjct: 122 GVGVSCVNALSTRMLSQVFRDGKIYQQEYETGKPLYPVKVVGET-DKRGTRQQFWPDPNI 180

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     +    +    +  AYL+  VK   +  +   ++ G    E F+   GLK +++ 
Sbjct: 181 FTTTV-YRWDIIASRMRELAYLNAGVKITLTDLR--PDENGKTRTETFHAKDGLKEFVRY 237

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              +RS +  ++   KTEK+      +E A+ +  +    I SY N I T EGGTH +G 
Sbjct: 238 VDRHRSHLFDDVIYLKTEKQNIP---IEVAVMYNTDYSENIHSYVNNINTIEGGTHLTGF 294

Query: 335 RVALTRGIKKYAEL------TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           R+ALTR +K YA+          K  I I  +D       ++S+ + EP+F GQTKTKL 
Sbjct: 295 RMALTRTLKTYADNDPVISKQIEKSKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLG 354

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKL 447
           + +    V+ A+ +   +YL ++P EA  + + VI  +  R+  RK RE  ++   +   
Sbjct: 355 NSEVSGAVQQAVGEALGYYLEEHPKEAKLICDKVILAATARIAARKARESVQRKNPMSGG 414

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADCS      +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV      K+
Sbjct: 415 GLPGKLADCSNKDPKTSEIFLVEGDSAGGSAKQGRDRYTQAILPLKGKILNVEKVQWHKV 474

Query: 508 RNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
              + +M+++Q++G R         +   + LRY+K+IIMTDADVDG+HI +L++T FY+
Sbjct: 475 FEAESVMNIIQSIGVRFGVEGEDDKEANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYR 534

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEF--KKHGKGKIEISRFK 618
            M  +I++ HL++ +PPL+  T   K   Y ++E+ +Q  ++++   +     I + R+K
Sbjct: 535 FMPRIIQEGHLYIATPPLYLCTYKNKVREYCYNEQQRQAFIDKYAEGQEDNKSIHVQRYK 594

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           GLGEM   QL ET MD +KR L +V I     +  D  +  + LMG   + R +FI++ A
Sbjct: 595 GLGEMNPEQLWETTMDPSKRLLKQVTI----QNAADADEIFSMLMGDDVEPRREFIEQNA 650

Query: 679 SFIDDVGT 686
           ++  ++  
Sbjct: 651 TYA-NIDA 657


>gi|84501601|ref|ZP_00999773.1| DNA topoisomerase IV, B subunit [Oceanicola batsensis HTCC2597]
 gi|84390222|gb|EAQ02781.1| DNA topoisomerase IV, B subunit [Oceanicola batsensis HTCC2597]
          Length = 652

 Score =  608 bits (1568), Expect = e-172,   Method: Composition-based stats.
 Identities = 347/652 (53%), Positives = 442/652 (67%), Gaps = 10/652 (1%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
             +A D YDASSI +LEGLEPVR RPGMYIGGTDE+ALHHL +E++DN+MDE +AG+A  
Sbjct: 7   TDTAPDTYDASSIEVLEGLEPVRKRPGMYIGGTDERALHHLVAEILDNSMDEAVAGHATR 66

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV L  +  LTV DNGRG+P + HPKFP KS LE+IL TLHAGGKF   +YE SGGLHG
Sbjct: 67  IEVELHEDYSLTVRDNGRGMPFDPHPKFPGKSALEVILCTLHAGGKFSGKSYETSGGLHG 126

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALSD + V VAR   +  Q+FSRG+P  PL++     N+RGT  TF PD +IF
Sbjct: 127 VGASVVNALSDSMVVQVARDRKLVEQRFSRGVPQGPLQEIGAAPNRRGTTTTFHPDEEIF 186

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                F  ARL K  +SKAYL   V+  W   K   +    P++  F+FPGGL  YL+  
Sbjct: 187 -GHHKFKPARLFKSIRSKAYLFSGVEIRW---KSAIDDGETPQEATFHFPGGLADYLKES 242

Query: 277 LENRSLISSEIFTG--KTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESG 333
           L      S   F G    +++    G VEWAI W    +  + SYCNT+ T EGGTH +G
Sbjct: 243 LSGAMTYSEAPFAGRVSFQERFGVPGRVEWAINWTPVRDGFVQSYCNTVPTPEGGTHVAG 302

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
              A+ +GIK Y EL  N++A  I  +DLM     ++S FIREPEF GQTK +L +++A 
Sbjct: 303 FWAAVLKGIKAYGELVNNRKAAQITREDLMAGGCALVSCFIREPEFVGQTKDRLATVEAH 362

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
           R VENA+RD FD++L  +   A  +L++++ R+EER RRR+++E  RKTA +KLRLPGKL
Sbjct: 363 RLVENAVRDHFDNWLAADTKSAGAILDFLVLRAEERQRRRQEKETQRKTATKKLRLPGKL 422

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
            DCS     GTELF+VEGDSAGGSAK AR+R  QA+LPLRGKILNV  A S KI  NQ+I
Sbjct: 423 TDCSATNRDGTELFLVEGDSAGGSAKMARDRKTQALLPLRGKILNVLGAASNKIGTNQEI 482

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            DL QA+G    +++  +DLRY+K+IIMTDADVDGAHIASLL+TFF+ +M  LI++ HL+
Sbjct: 483 NDLCQAMGVGLGTKFNIDDLRYDKIIIMTDADVDGAHIASLLMTFFFSQMRPLIDKGHLY 542

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           L  PPLFR+TQG   VY  DE  +   LE+    GKGKIE+SRFKGLGEM A  LKET M
Sbjct: 543 LACPPLFRLTQGAHRVYVQDEAERDVWLEK-GLGGKGKIEVSRFKGLGEMDAKDLKETTM 601

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D   R L+RV +++   +  +T D + +LMG K + RF++IQE A F + + 
Sbjct: 602 DVKTRKLIRVTVDE--EAPGETGDLVERLMGKKPELRFQYIQENARFAEGLD 651


>gi|119963753|ref|YP_945839.1| DNA gyrase subunit B [Arthrobacter aurescens TC1]
 gi|119950612|gb|ABM09523.1| DNA gyrase, B subunit [Arthrobacter aurescens TC1]
          Length = 692

 Score =  608 bits (1568), Expect = e-172,   Method: Composition-based stats.
 Identities = 251/711 (35%), Positives = 378/711 (53%), Gaps = 46/711 (6%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           M +D+ +  +  P +         ++   PD+PA A +     Y AS I +LEGLE VR 
Sbjct: 1   MANDNAETLAVEPEE---------ETVPKPDTPAEAPR----EYGASDITVLEGLEAVRK 47

Query: 61  RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           RPGMYIG T  + LHHL  EV+DN++DE +AGY + IEV+L  +G + VVD+GRGIPV+ 
Sbjct: 48  RPGMYIGSTGPRGLHHLVYEVVDNSVDEALAGYCSHIEVTLRADGGVRVVDDGRGIPVDI 107

Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
           HP    K T+E+++T LHAGGKF    Y +SGGLHGVGISVVNALS  +   V RQ  ++
Sbjct: 108 HP-TEGKPTVEVVMTILHAGGKFGGGGYAVSGGLHGVGISVVNALSRRVDTEVRRQGHVW 166

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
              F+ G        K +  +  GT  TF PD  IF     FD   L    Q  A+L+  
Sbjct: 167 RMTFADGGKPQGELVKGEATDVTGTSQTFYPDGTIFES-TEFDFETLRARFQQMAFLNKG 225

Query: 241 VKTCWSCDK----------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENR--SL 282
           ++   + ++                   E         + +P GL  Y++    ++   +
Sbjct: 226 LRITLTDERPVNRDGDDDLDLDAVATEGEVAAEHRTVVYQYPDGLLDYVKHLNSSKKVEI 285

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +  ++   +TE        VE A+ W       + +Y NTI T EGGTHE G R A+T  
Sbjct: 286 VHEDVIAFETE-DTERHIAVEVAMQWTTAYSESVHTYANTINTHEGGTHEEGFRAAMTSL 344

Query: 342 IKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I +YA       ++  ++  DD+      ++SV + EP+F GQTKTKL + + +  V+  
Sbjct: 345 INRYAREKSIIKEKEDNLTGDDIREGLTAVISVKLSEPQFEGQTKTKLGNSEVKGFVQRV 404

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458
           + D    +L +NP  A  ++   I  ++ R+  RK R+  R+ + +    +PGKL+DCS 
Sbjct: 405 VTDQLGDWLERNPGPARDVIRKAISAAQARMAARKARDNARRKSPLESFGMPGKLSDCSS 464

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E+++VEGDSAGGSAK+ RN   QA+LPLRGKILNV  A  +K   N ++  ++ 
Sbjct: 465 KDPSRCEVYLVEGDSAGGSAKRGRNPETQAILPLRGKILNVERARLDKALGNAEVQSMIT 524

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A G      +    LRY K+++M DADVDG HI +LL+T  ++ M  LIE  +++L  PP
Sbjct: 525 AFGTGIGEDFDIAKLRYHKIVLMADADVDGQHITTLLMTLLFRYMRPLIENGYVYLAQPP 584

Query: 579 LFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMD 634
           L+RI     +  Y + +  + + + +     K   +   I R+KGLGEM  ++L +T MD
Sbjct: 585 LYRIKWSNAAHDYVYSDRERDETIRKGAAMNKRLPKDNGIQRYKGLGEMDYTELWDTTMD 644

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            ++RTLL+V ++  L        + + LMG   + R  FIQ+ A  +  + 
Sbjct: 645 PDRRTLLQVTMDDAL----AADQTFSVLMGEDVESRRNFIQQNAKDVRFLD 691


>gi|269124283|ref|YP_003297653.1| DNA gyrase subunit B [Thermomonospora curvata DSM 43183]
 gi|268309241|gb|ACY95615.1| DNA gyrase, B subunit [Thermomonospora curvata DSM 43183]
          Length = 649

 Score =  608 bits (1568), Expect = e-172,   Method: Composition-based stats.
 Identities = 246/656 (37%), Positives = 381/656 (58%), Gaps = 24/656 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YDASSI +LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AGYA+ IEV+L  
Sbjct: 3   YDASSITVLEGLEAVRKRPGMYIGSTGERGLHHLVYEIVDNSVDEALAGYADTIEVTLLA 62

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G + V DNGRGIPV+ HP    +  +E++LTTLHAGGKFD  +Y +SGGLHGVG SVVN
Sbjct: 63  DGGVRVADNGRGIPVDEHP-VEKRPAIEVVLTTLHAGGKFDGKSYAVSGGLHGVGSSVVN 121

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS  L   V ++  ++ Q ++   P++PL K  +  ++ GT ITF PDP+IF     ++
Sbjct: 122 ALSTRLDAEVRQKGYVWRQSYTWRGPIAPLAK-GEPTDETGTTITFWPDPEIFET-VEWN 179

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIA---EKYGIPEKEEFYFPGGLKTYLQTKLENR 280
              L +  Q  A+L+  +    + ++      E    P +  + + GG+  +++     +
Sbjct: 180 FETLSRRLQEMAFLNRGLSITLTDERPGHLGGEDGTEPRRVVYCYEGGISDFVRYLNAKK 239

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
             +  ++ + +   +G    +VE A+ W       + ++ NTI T EGGTHE G R ALT
Sbjct: 240 DAVHPDVISFEEHTEG---MSVEVAMQWSGSYTESVHTFANTINTAEGGTHEEGFRSALT 296

Query: 340 RGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
             + +YA       ++  ++  +D+      I+S+ +  P+F GQTKTKL + +A+  V+
Sbjct: 297 SVVNRYARDKGLLREKDDNLTGEDVREGLTAIISIKLTNPQFEGQTKTKLGNTEARSFVQ 356

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADC 456
             + +    +  + P +A +++    + +  R+  R+ R++ R+ + +    LPGKLADC
Sbjct: 357 KTVHEHLKDWFDREPGQAKEIINKASQAARARIAARQARDLTRRKSLLESTSLPGKLADC 416

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
                   EL+IVEGDSAGGSAK  RN   QA+LP+RGKILNV  A  +KI  N ++  +
Sbjct: 417 QSTDPAKCELYIVEGDSAGGSAKGGRNPHFQAILPIRGKILNVEKARIDKILKNAEVQAI 476

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + ALG     ++    LRY K+I+M+DAD+DG HI +LLLT  ++ M  LIE  H++L  
Sbjct: 477 ITALGTGVHDEFDISKLRYHKIILMSDADIDGHHINTLLLTLLFRFMRPLIEAGHVYLSQ 536

Query: 577 PPLFRIT---QGTKSVYAHDEEHKQKILE----EFKKHGKGKIEISRFKGLGEMLASQLK 629
           PPL++I    +G  + YA+ +  +  I+E      K+  + +  + RFKGLGEM A +L 
Sbjct: 537 PPLYKIKWDQRGQDAEYAYSDAERDAIIEAGIAAGKRDPRPRDGVQRFKGLGEMNAQELW 596

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +T MD ++R LL+V ++          +  + LMG   + R +FIQ  A  +  + 
Sbjct: 597 DTTMDPSRRVLLQVTLDD----AAQADELFSVLMGEDVEPRREFIQRNAKDVRFLD 648


>gi|261878836|ref|ZP_06005263.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella bergensis
           DSM 17361]
 gi|270334578|gb|EFA45364.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella bergensis
           DSM 17361]
          Length = 657

 Score =  608 bits (1568), Expect = e-172,   Method: Composition-based stats.
 Identities = 259/669 (38%), Positives = 388/669 (57%), Gaps = 30/669 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
             N    +NY AS+I++LEGLE VR RP MYIG   EK LHHL +E +DN++DE +AGY 
Sbjct: 2   AENLKREENYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLINETVDNSIDEAMAGYC 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + IEV+++ +   TV DNGRGIPV+ H K    S LE+++T LHAGGKFD  +Y++SGGL
Sbjct: 62  DHIEVTINEDNSCTVEDNGRGIPVDQHEKLHK-SALEVVMTVLHAGGKFDKGSYKVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+S VNALS  +   V R    + Q++ +G PL P++      +KRGTR  F PDP 
Sbjct: 121 HGVGVSCVNALSARMLSQVFRDGKAYQQEYEKGKPLYPVKVIGNT-DKRGTRQQFWPDPT 179

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     F    + +  +  AYL+  +K   +  +    + G   +E F+   GLK +++
Sbjct: 180 IFTT-RTFQWDIVARRMRELAYLNAGIKITLTDLR--PNEDGKIRQEVFHAKDGLKEFVR 236

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333
               +R+ +  ++   KTEK+G     +E AI +  +  E    Y N I T EGGTH +G
Sbjct: 237 YIDRHRTHLFDDVIYLKTEKQGVP---IEVAIMYNTDYSENLHSYVNNINTIEGGTHVTG 293

Query: 334 LRVALTRGIKKYAEL------TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
            R ALTR +K YA+          K  + I  +D       ++S+ + EP+F GQTKTKL
Sbjct: 294 FRQALTRVLKNYADNDPQIAKQIEKAKVEIAGEDFREGLTAVISIKVAEPQFEGQTKTKL 353

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRK 446
            + +    V  A+ +   +YL ++P EA ++ E V+  +  R+  RK RE  ++ + +  
Sbjct: 354 GNSEVTGAVNQAVGEALTNYLEEHPTEAKQICEKVVLAATARVAARKARESVQRKSVMTG 413

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADCS       E+F+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV      +
Sbjct: 414 GGLPGKLADCSNKDPKLCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQWHR 473

Query: 507 IRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           +   + +M+++Q++G R         +   + LRY+K+IIMTDADVDG+HI +L++T FY
Sbjct: 474 VFEAESVMNIIQSIGVRFGVDGEDDREANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFY 533

Query: 561 QEMYDLIEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEF--KKHGKGKIEISRF 617
           + M  +IE+ HL++ +PPL++ T +G  S Y ++E  +    +++   +     I   R+
Sbjct: 534 RFMPKIIEEGHLYIATPPLYKCTYKGKNSEYCYNEGQRLAYFQKYANGEEDSKNIHTQRY 593

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           KGLGEM   QL ET MD   R L +V I     +  +  ++ + LMG   + R +FI+  
Sbjct: 594 KGLGEMNPDQLWETTMDPANRLLKQVTIE----NAAEADETFSMLMGDDVEPRREFIEAN 649

Query: 678 ASFIDDVGT 686
           A++  ++  
Sbjct: 650 AAYA-NIDA 657


>gi|261368839|ref|ZP_05981722.1| DNA gyrase, B subunit [Subdoligranulum variabile DSM 15176]
 gi|282569109|gb|EFB74644.1| DNA gyrase, B subunit [Subdoligranulum variabile DSM 15176]
          Length = 662

 Score =  608 bits (1568), Expect = e-172,   Method: Composition-based stats.
 Identities = 234/670 (34%), Positives = 374/670 (55%), Gaps = 31/670 (4%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +      +    Y  + I++LEGLE VR RPGMYIG T    LHHL  E++DN++DE +A
Sbjct: 7   TETNRETATDHAYGGAQIQVLEGLEAVRKRPGMYIGSTGPSGLHHLVYEIVDNSIDEALA 66

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF--DNSTYE 149
           GY   IEV++     + V DNGRGIPV+  PK      + ++ T LHAGGKF  ++S Y+
Sbjct: 67  GYCTHIEVTIKPGNIIQVSDNGRGIPVDIQPKL-GIPAVTVVYTVLHAGGKFGGEDSGYK 125

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           ++GGLHGVG SVVNALS+ L V V R    + Q F RG P   L+K     +  GT + F
Sbjct: 126 VAGGLHGVGASVVNALSEWLTVRVRRDGAEYEQSFQRGKPDGDLKKIGSAAS-TGTLVIF 184

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE-------KEE 262
           +PDP++F +   +    LLK  + +A+L+  V+   + ++  +++    +        E 
Sbjct: 185 KPDPEMFQETTQYRYETLLKRLREEAFLNAGVRITLTDERPESDRPAEEKGPENDGRSET 244

Query: 263 FYFPGGLKTYLQTKLENR--SLISSEIFTGKTEKKGTHRGTVEWAIAWCE--ENPEITSY 318
             + GG+++++    E R  + ++ ++   K E +G      E A+ + +   N  I S+
Sbjct: 245 MCYEGGIRSFVSYLCERRDLTPLTPQVMYMKGEGQG---AVAEVALQYYDNSYNELILSF 301

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N + T EGGTHE G ++ALTR + +Y         +  ++   D     + ++SV ++E
Sbjct: 302 ANNVHTPEGGTHEEGFKLALTRVLNEYGRAKGILKDKDENLSGPDAREGIIAVVSVKLQE 361

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQ 435
            +F GQTK KL +   +  V   +      Y  +NP  A  +L +           ++ +
Sbjct: 362 AQFEGQTKAKLGNTFIKGLVNGVVYKALTEYFEENPAVAKAILEKATQAARARAAAKKAR 421

Query: 436 REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
             V RK+A+   R+PGKLADC +     TELFIVEGDSAGGSAK  R+ + QA+LPL GK
Sbjct: 422 DLVRRKSALESNRMPGKLADCHEKDPSKTELFIVEGDSAGGSAKMGRDSNIQAILPLWGK 481

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLL 555
           +LNV  A +++I  N ++M +V ALG     ++    +RY K+ IM DADVDG+HI +L+
Sbjct: 482 MLNVEKARADRIYGNDKLMPVVTALGTGIGDEFDISKVRYHKIFIMADADVDGSHICTLM 541

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615
           LTFF++ M  LIE  ++++  PPLF++ +G    YA++++  + +  E         +++
Sbjct: 542 LTFFFRYMRPLIEHGYVYVAQPPLFKLQKGQTVKYAYNDDEMKVLSAEMP-----GAKVN 596

Query: 616 RFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675
           R+KGLGEM   QL ET M+ + R +++++I       +   ++ + LMG + + R +FI 
Sbjct: 597 RYKGLGEMNPDQLWETTMNPDNRVIVQIKIED----AERADEAFSILMGEQVEPRRQFIV 652

Query: 676 ERASFIDDVG 685
           + A F  ++ 
Sbjct: 653 KNAKFA-NLD 661


>gi|118445175|ref|YP_879293.1| DNA gyrase subunit B [Clostridium novyi NT]
 gi|118135631|gb|ABK62675.1| DNA gyrase, B subunit [Clostridium novyi NT]
          Length = 637

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 254/646 (39%), Positives = 379/646 (58%), Gaps = 20/646 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YD S I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AG+   IEV +  
Sbjct: 7   YDESQIQVLEGLEAVRKRPGMYIGTTGIRGLHHLVYEIVDNSIDEALAGFCQNIEVLIHK 66

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +  +TV D+GRG+PV  HPK   K T+E+I+T LHAGGKF    Y++SGGLHGVG SVVN
Sbjct: 67  DNCITVKDDGRGMPVGIHPKM-KKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVN 125

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS E +V V R   I+SQ + +G  +S L       ++ GT + F+PD +IF +   FD
Sbjct: 126 ALSKECNVEVRRDGHIWSQNYKKGKVVSELTIVGDT-DEHGTSVYFKPDDEIFEEV-EFD 183

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
            + L +  +  A+L+  +K     ++E  E+        F++ GG+K+++     N+  +
Sbjct: 184 YSTLAQRLRELAFLNKGIKIILVDEREGNERRDE-----FHYEGGIKSFVSFLNRNKQTL 238

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
            +E    +  K       VE  + + +     I S+ N I T EGGTH +G + ALTR +
Sbjct: 239 HAEPIYVEGNKDD---YLVEVGLQYNDTYNENIFSFANNIDTVEGGTHLAGFKTALTRVL 295

Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             YA       +   ++  DD       ++SV + +P+F GQTKTKL + + +  V++ +
Sbjct: 296 NDYARRYGFLKENDKNLSGDDTREGLTAVISVKLTDPQFEGQTKTKLGNTEVRGIVDSIV 355

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQN 459
            +    +L +NP  A  ++E  +  +  R   +K RE   RK+ +    LPGKLADCS  
Sbjct: 356 SERVSIFLEENPDTAKIVIEKSLTAARAREAAKKARELTRRKSVLESTSLPGKLADCSSK 415

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
                E+++VEGDSAGGSAKQ R+R  QA+LPLRGKI+NV     +KI N+ QI  ++ A
Sbjct: 416 DPSECEIYLVEGDSAGGSAKQGRDRRFQAILPLRGKIMNVEKQRLDKILNSDQIRAMITA 475

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
            G      +  E +RY ++IIMTDADVDGAHIA+LLLTFFY+ M +L++  H+++  PPL
Sbjct: 476 FGAGIGKDFDIEKIRYHRIIIMTDADVDGAHIATLLLTFFYRYMRELVDGGHVYIAQPPL 535

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           +++ +G    YA+ +   Q++L +     K   EI R+KGLGEM A QL +T M+   RT
Sbjct: 536 YQVKKGKSVNYAYSDNELQEVLAQIGGKDKNT-EIQRYKGLGEMDAGQLWDTTMNPEHRT 594

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           L++V I+  +       +    LMG K + R +FI+E A  + ++ 
Sbjct: 595 LVKVTIDDAMR----ADEVFTILMGDKVEPRREFIEENAKKVVNLD 636


>gi|57233676|ref|YP_180759.1| DNA gyrase, B subunit [Dehalococcoides ethenogenes 195]
 gi|57224124|gb|AAW39181.1| DNA gyrase, B subunit [Dehalococcoides ethenogenes 195]
          Length = 642

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 255/659 (38%), Positives = 386/659 (58%), Gaps = 24/659 (3%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
           D       + ++NY+AS I++LEGL  VR RPGMYIG TD++ LHHL  E++ N++DE +
Sbjct: 3   DENKAKPGANAENYNASDIQVLEGLAAVRKRPGMYIGSTDQRGLHHLVYEIVYNSVDEAM 62

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AG  + I+V +  +G ++V DNGRGIP++ HP     S LE ++T LHAG KF   TY++
Sbjct: 63  AGVCDRIKVIIYKDGSVSVEDNGRGIPIDIHP-VTKISALETVMTVLHAGAKFGGKTYQV 121

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG SVVNAL++   V V R   I+ Q + RG P +PLE+   V +  GT   F+
Sbjct: 122 SGGLHGVGASVVNALAEWTTVKVRRNGKIYQQSYQRGKPSTPLEEVG-VSDGSGTTTIFK 180

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
            D +IF     +D   L    +  AYL+  ++     ++   E+        +YF GG+ 
Sbjct: 181 ADSQIFSTT-EYDFETLTDRLREIAYLNKGLEVYIYDEQSDQERT-------YYFEGGIT 232

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGT 329
            +++    NR +   +      +   T    +E AI + +   +   ++ N + T +GGT
Sbjct: 233 GFVRHLNRNREVRHRQPIYITKKSDSTI---LEVAIQYNDGYSDSTLTFANCVNTIDGGT 289

Query: 330 HESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R ALTR    YA  ++  +    +++ DD+    V I+SV + EP+F GQTK KL
Sbjct: 290 HLTGFRSALTRAFNDYAHKSKFLKDTDPNLMGDDVREGIVAIVSVKLPEPQFEGQTKGKL 349

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
            +++ +  VE+A+ +    YL ++P +  ++LE  I  ++ R   RK R+ + RK+A+  
Sbjct: 350 GNIEIKSFVESAVTEQLSLYLEEHPDDTKRILEKCITAAKAREAARKARDLIIRKSALDT 409

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADCS+  A   ELF+VEGDSAGGSAKQ RNR  QA+LPLRGKILNV  A  +K
Sbjct: 410 GTLPGKLADCSERDASLCELFLVEGDSAGGSAKQGRNRRFQAILPLRGKILNVEKASPDK 469

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           +  +++I  ++ AL     + +    LRY ++++MTDADVDG+HI +LLLTFF++ M  L
Sbjct: 470 MLAHEEIRAIITALAAGIDNDFDPAKLRYNRLVLMTDADVDGSHIRTLLLTFFFRHMPRL 529

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           I + HLF+  PPL++I  G+   + +++  K+ +L + K +   K++I R+KGLGEM A 
Sbjct: 530 ITESHLFIAQPPLYKIKIGSNEHWVYNDAEKETLLSQTKSN---KVDIQRYKGLGEMSAE 586

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           QL +T MD   RTLL V++              N LMG +   R  FIQ  +  + ++ 
Sbjct: 587 QLWKTTMDPASRTLLEVKVED----AAKADQIFNLLMGGEVAPRKAFIQSHSKTVKNLD 641


>gi|257783820|ref|YP_003179037.1| DNA gyrase, B subunit [Atopobium parvulum DSM 20469]
 gi|257472327|gb|ACV50446.1| DNA gyrase, B subunit [Atopobium parvulum DSM 20469]
          Length = 647

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 253/659 (38%), Positives = 371/659 (56%), Gaps = 26/659 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  + Y+ + I+ILEGLE VR RPGMYIG T    LHHL  E++DN++DE +AGY + I+
Sbjct: 2   AKENKYNGTEIKILEGLEAVRKRPGMYIGTTSASGLHHLVWEIVDNSVDEAMAGYCSKIK 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +  ++V DNGRGIPV+ HP+     TLE++LT LHAGGKFDN+ Y++SGGLHGVG
Sbjct: 62  VTIHPDNSISVEDNGRGIPVDLHPQ-KKIPTLEVVLTILHAGGKFDNNAYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS +L   V R   I+   F RG  +  +++        GT ITF PD  IF  
Sbjct: 121 VSVVNALSKKLVAQVKRDGKIYEMVFERGKTVQKMKEIG-TSKSNGTTITFWPDDMIFET 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              ++   L    Q  A+L+  +K     ++E+      P + +F + GG+  +++   +
Sbjct: 180 TT-YNFDTLRDRLQETAFLNKNLKITLVDEREL-----TPRQVDFQYAGGIIDFVKYLND 233

Query: 279 NRSLIS--SEIFTGKTEKKGT----HRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHE 331
            ++++   S     + +          G VE AI W  +  +   S+ N I T+EGG H 
Sbjct: 234 EKTVLPGLSRPIYIEGKSDPDAPMSQMGEVEVAIQWNTDFSDRTLSFANDIFTEEGGMHL 293

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G R ALT+ +  Y        ++   +   D+      ++SV + +P+F GQTK KL S
Sbjct: 294 EGFRTALTKVVNDYGTRQGILKEKDPKLEGGDIREGLTAVISVKLPDPQFEGQTKAKLGS 353

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLR 448
              +      +      YL ++P +A ++L+   + ++ RL  RK RE  R+  +     
Sbjct: 354 SYMRTLTNKIVTQGLSEYLEEHPNQAKEILKKASQAAKGRLAARKAREATRRKGLLESAA 413

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS   A  TELFIVEGDSAGGSAK AR+RS QAVLPLRGKILNV    + +  
Sbjct: 414 LPGKLADCSVRDAEMTELFIVEGDSAGGSAKMARDRSIQAVLPLRGKILNVERVQAHRAL 473

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           ++  I  L+ A+G     ++  E  RY K++IMTDADVDG+HI  LLLTFFY+ M  +I+
Sbjct: 474 SSDTITSLITAIGTGVGDEFSLEKARYHKIVIMTDADVDGSHIRILLLTFFYRYMKPMID 533

Query: 569 QKHLFLISPPLFRIT-QGTKS-VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
             ++++  PPL++I  +G K+  Y + +E     LE  K     K  I R+KGLGEM   
Sbjct: 534 AGYIYVAQPPLYQIKPKGKKNGKYIYTDEEL--ALETKKFEDNTKYTIQRYKGLGEMDPE 591

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           QL  T M+   R LL+V I+  L        +++ LMG + ++R  FIQ  A  +  + 
Sbjct: 592 QLWATTMEPKNRILLKVTIDDAL----AADRAVSDLMGNQVEKRKDFIQTHAKDVRFLD 646


>gi|313887747|ref|ZP_07821429.1| DNA gyrase, B subunit [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846356|gb|EFR33735.1| DNA gyrase, B subunit [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 637

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 262/649 (40%), Positives = 391/649 (60%), Gaps = 25/649 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YDAS I++LEGL+PVR RPGMYIG T  + LHHL  E++DN++DE +AG  + I + ++ 
Sbjct: 8   YDASDIQVLEGLDPVRKRPGMYIGSTGPRGLHHLVYEIVDNSIDEALAGICDHIIIKINK 67

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           NG + + DNG GIPV+ HP+   KST+E +LT LHAGGKFDNS Y++SGGLHGVG+SVVN
Sbjct: 68  NGSVEITDNGSGIPVDIHPQ-TGKSTVETVLTILHAGGKFDNSAYKVSGGLHGVGVSVVN 126

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222
           ALS++L  TV R   I+ Q+F+RGI  S LE   +   ++ GT I F PD  IF     F
Sbjct: 127 ALSNKLVATVKRNGKIYRQEFARGIRKSDLEVIGETNTDETGTTIYFEPDDTIFET-VEF 185

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  A+L+  +K  +  +++          E F++ GG+K++++     +  
Sbjct: 186 SDEVLAKRFREMAFLNKGIKIEFIDERK-------DLNEVFHYEGGIKSFVEFINAKKKP 238

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +  EI      ++ T    VE AI + +     + S+ N I T+EGGTH SG R ALTR 
Sbjct: 239 VHDEIIYIDEIREET---AVEIAIQYTDSYSEVVLSFANNINTEEGGTHLSGFRSALTRT 295

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +  Y        ++  ++  +D+      ++SV + +P+F GQTK KL + + +  V++ 
Sbjct: 296 LNDYGRKNNIIKEKEENLSGEDVREGISAVISVKLPDPQFEGQTKGKLGNSETRGIVDSV 355

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           L +    +L +NP    ++L+  +     R   RK R+   +K  +  + LPGKLADC  
Sbjct: 356 LSEDLAVFLEENPRVGKQILDKALSARRAREAARKARDLTRKKNNLESMTLPGKLADCQN 415

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
           +     E+F+VEG+SAGGSAK  R+ + QA+LPLRGKI+NV  A  +++ N+ +I  ++ 
Sbjct: 416 DDPKRNEIFLVEGNSAGGSAKDGRDSAYQAILPLRGKIMNVEKARLDRMLNSSEIRAMIT 475

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A G     ++  E LRY+K+IIMTDADVDGAHI +LLLTFF++ M  LIE+ H+++   P
Sbjct: 476 AFGTGIGEEFDLEKLRYDKIIIMTDADVDGAHIMTLLLTFFFRYMKPLIEEGHVYVAQAP 535

Query: 579 LFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           L+ I +GTK + Y H+E+  +  L+E+K     K+ I R+KGLGEM   QL ET M+ + 
Sbjct: 536 LYGIEKGTKILRYCHNEKELRLALKEYKD---SKVNIKRYKGLGEMDPEQLWETTMNPDN 592

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           R LL+V I+     L +  D+ + LMGT+ + R  FI E A + D +  
Sbjct: 593 RLLLKVNIDD----LAEADDTFSILMGTEVEPRRDFITENAVYADYIDA 637


>gi|289431959|ref|YP_003461832.1| DNA gyrase subunit beta [Dehalococcoides sp. GT]
 gi|288945679|gb|ADC73376.1| DNA gyrase, B subunit [Dehalococcoides sp. GT]
          Length = 642

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 258/659 (39%), Positives = 379/659 (57%), Gaps = 24/659 (3%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
           D+      + S+ Y AS I++LEGL  VR RPGMYIG TD++ LHHL  E++ N++DE +
Sbjct: 3   DANKAKPGANSETYTASDIQVLEGLAAVRKRPGMYIGSTDQRGLHHLVYEIVYNSVDEAM 62

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AG  + I+V +  +G ++V DNGRGIPV  H      S LE ++T LHAG KF   TY++
Sbjct: 63  AGVCDRIKVIMFKDGSVSVEDNGRGIPVGIHS-TTKISALETVMTVLHAGAKFGGKTYQV 121

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG SVVNALS+   V V R   I+ Q + RG P +PLE+   V    GT   F 
Sbjct: 122 SGGLHGVGASVVNALSEWTTVKVRRNGKIYQQSYLRGKPSTPLEEVG-VSEGSGTTTIFM 180

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
            D +IF     +D   L    +  AYL+  ++     +K   E+        +YF GG+ 
Sbjct: 181 ADSQIFSTT-EYDFETLTDRLREIAYLNKGLEVYIYDEKSDQERT-------YYFEGGIT 232

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGT 329
            +++    NR +   +      +   T    +E AI + +   +   ++ N + T +GGT
Sbjct: 233 GFVRHLNRNREVRHRQPIYITKKSDSTI---LEVAIQYNDGYSDSTLTFANCVNTVDGGT 289

Query: 330 HESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R ALTR    YA  ++  +    +++ DD+    V I+SV + EP+F GQTK KL
Sbjct: 290 HLTGFRSALTRAFNDYAHKSKFLKDTDPNLMGDDVREGIVAIVSVKLPEPQFEGQTKGKL 349

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
            +++ +  VE+A+ +    YL ++P +  ++LE  I  ++ R   RK R+ + RK+A+  
Sbjct: 350 GNIEIKSFVESAVAEQLSLYLEEHPDDTKRILEKCITAAKAREAARKARDLIIRKSALDT 409

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADCS+  A   ELF+VEGDSAGGSAKQ RNR  QA+LPLRGKILNV  A  +K
Sbjct: 410 GTLPGKLADCSERDASLCELFLVEGDSAGGSAKQGRNRRFQAILPLRGKILNVEKASPDK 469

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           +  +++I  ++ AL     + +    LRY ++++MTDADVDG+HI +LLLTFF++ M  L
Sbjct: 470 MLAHEEIRAIITALAAGIDNDFDPSKLRYNRLVLMTDADVDGSHIRTLLLTFFFRHMPRL 529

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           I + HLF+  PPL++I  G+   + +++  K+ IL + K     K++I R+KGLGEM A 
Sbjct: 530 ITESHLFIAQPPLYKIKIGSTEHWVYNDAEKEAILAQTKST---KVDIQRYKGLGEMSAE 586

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           QL  T MD   RTLL V++              N LMG +   R  FIQ  +  + ++ 
Sbjct: 587 QLWRTTMDPASRTLLEVKVED----AAKADQIFNLLMGGEVAPRKAFIQSHSRTVKNLD 641


>gi|114771101|ref|ZP_01448541.1| DNA topoisomerase IV subunit B [alpha proteobacterium HTCC2255]
 gi|114548383|gb|EAU51269.1| DNA topoisomerase IV subunit B [alpha proteobacterium HTCC2255]
          Length = 661

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 345/655 (52%), Positives = 452/655 (69%), Gaps = 9/655 (1%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           ++    +YDASSI++LE +E VR+RPGMYIGGTD++ALHH+ +E+IDN+MDE +AG+A  
Sbjct: 9   DRPIDKSYDASSIQVLEDMEHVRLRPGMYIGGTDDRALHHMVAEIIDNSMDEAVAGHATW 68

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV L  N  +TV DNGRGIPV+ HPKFPNKS LEII  TL+AGGKF    YE SGGLHG
Sbjct: 69  IEVELHENFHVTVRDNGRGIPVDMHPKFPNKSALEIIFCTLNAGGKFSGENYETSGGLHG 128

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALSD + V VA+   +F+ +FSRG+P   L+    V+N+RGT +TF PDP+IF
Sbjct: 129 VGSSVVNALSDFVRVEVAKNRELFALEFSRGLPQGKLKNLGSVQNRRGTSVTFHPDPEIF 188

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI-PEKEEFYFPGGLKTYLQT 275
           G    F A RL  M +SKAYL   V+  W  D +  E     P  + F FP GL  YL  
Sbjct: 189 GKSLNFKAKRLYAMAKSKAYLFSGVEIRWKVDPKCLEHNDETPITDTFRFPNGLADYLNE 248

Query: 276 KLENRSLISSEIFTGKT---EKKGTHR-GTVEWAIAW-CEENPEITSYCNTILTDEGGTH 330
           +L   S+ S   F GK    EK G    G +EWAI W    +    SYCNT+ T EGGTH
Sbjct: 249 RLVGSSVYSEIPFAGKVQFSEKFGHSTIGNIEWAINWTPSRDSFTQSYCNTVPTPEGGTH 308

Query: 331 ESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           ESG   A+ +GIK Y EL  NK++ SI  DD+M     ++S FI EP+F GQTK +L + 
Sbjct: 309 ESGFWSAILKGIKSYGELINNKKSASITRDDVMGGGCALVSCFISEPKFVGQTKDRLATT 368

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
           +A + VEN++RD FD++L  N   A  +L++++ ++EERLRR+++++  RK+A +KLRLP
Sbjct: 369 EAIKWVENSVRDHFDNWLASNNKSAGAILDYMVLKAEERLRRKQEKDTARKSATKKLRLP 428

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL DCS N   GTELFIVEGDSAGGSAK AR+R  QA+LPLRGKILNV  A S K+  N
Sbjct: 429 GKLTDCSNNTREGTELFIVEGDSAGGSAKMARDRKTQALLPLRGKILNVLGAASNKMSAN 488

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
            +I DL QALG +T +++  +DLRYEK+IIMTDADVDGAHIASLL+TFF+ +M  LI+  
Sbjct: 489 NEINDLCQALGVQTGTKFNIDDLRYEKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDNG 548

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           HL++  PPLFR+TQG   VY  D+  K  ++EE    G+G+I+ISRFKGLGEM A  LKE
Sbjct: 549 HLYMACPPLFRLTQGANRVYCMDDIEKNNMIEE-GLGGRGRIDISRFKGLGEMDAKDLKE 607

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T M+ + R L+++ I++D      T D +++LMG K + RF++IQE A F++D+ 
Sbjct: 608 TTMNKSTRQLIQINIDEDE--PGQTDDLVDRLMGKKPELRFQYIQENAKFVEDLD 660


>gi|156744114|ref|YP_001434243.1| DNA gyrase subunit B [Roseiflexus castenholzii DSM 13941]
 gi|156235442|gb|ABU60225.1| DNA gyrase, B subunit [Roseiflexus castenholzii DSM 13941]
          Length = 653

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 250/648 (38%), Positives = 368/648 (56%), Gaps = 23/648 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YD   I++LEG+E VR RPGMYIG TD   LH +  EV+DN++DEV+AG A  +EV++  
Sbjct: 22  YDEDQIQVLEGMEAVRRRPGMYIGPTDVNGLHTMVREVVDNSVDEVMAGRATTVEVTIHE 81

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G +TV D+G GIP   HPK    STL++++T LHAGGKFDN +Y++S GLHGVG+S VN
Sbjct: 82  DGSVTVADDGYGIPTGPHPKL-GVSTLQVVMTVLHAGGKFDNKSYKVSSGLHGVGVSAVN 140

Query: 164 ALSDELHVTVA--RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           ALS  + V V   R    + Q++  G+P   ++K       RGT   F PD  I      
Sbjct: 141 ALSAYMRVDVHNARDGMHYYQEYRCGVPQCEVQKVGPTTR-RGTITRFLPDTTIIQTL-D 198

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L +  +  AYL+  ++  +  +++  E         FYF GG+++Y++   ++++
Sbjct: 199 YNFKTLAQRFREMAYLNKGLRFKFVDERDGNEIN-------FYFEGGIRSYVRHLNKDKN 251

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVALT 339
           ++    F  +   +      VE A+ + E        ++ N I   +GG H +G R ALT
Sbjct: 252 VLHKHPFYVE---RTIDEVMVEVALQYTESFDTDSVYAFANGINNTDGGAHVAGFRSALT 308

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA       +   ++  DD+      ++SV +R+P+F+ QTK KLVS  A   V 
Sbjct: 309 RVINAYARSKGFLKENEGNLTGDDVREGLTAVISVKLRDPQFSSQTKEKLVSPSATGAVN 368

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
               D F  +L +NP EA +++E  I  +  R+  +K RE  RK+A+    LPGKLADCS
Sbjct: 369 TVFGDAFSAWLEENPQEARRIVEKCISAARTRIAVQKVRETARKSAMEGFSLPGKLADCS 428

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELFIVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  +  +K+ +N ++  L+
Sbjct: 429 DTNPARTELFIVEGDSAGGSAKQGRDRRYQAILPLRGKILNVEKSRLDKMLSNNEVKALI 488

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G     Q+    LRY ++I+M DADVDG+HI +LLLTFF++ M  +I   HL+L  P
Sbjct: 489 TAIGAGVGDQFDPSKLRYHRIILMCDADVDGSHIRTLLLTFFFRYMRQIITNGHLYLAQP 548

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G    Y   +  + + L       + K  ++R+KGLGEM A+QL ET M+   
Sbjct: 549 PLYRIVHGKTEKYVFTDTERDQYLATLSSAERNKAVVTRYKGLGEMNAAQLWETTMNPLN 608

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           R LL+V +       +   ++   LMG     R +FIQ  A  + ++ 
Sbjct: 609 RLLLQVTLED----AQQADETFTMLMGDLVPPRKRFIQTHALEVRNLD 652


>gi|199598229|ref|ZP_03211650.1| DNA gyrase, B subunit [Lactobacillus rhamnosus HN001]
 gi|199590832|gb|EDY98917.1| DNA gyrase, B subunit [Lactobacillus rhamnosus HN001]
          Length = 653

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 260/649 (40%), Positives = 368/649 (56%), Gaps = 22/649 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YDAS I++L GLE VR RPGMYIG T  + LHHL  E+IDN +DE +AG+A  IEV ++ 
Sbjct: 19  YDASQIQVLSGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNGIDEALAGFATRIEVEVNP 78

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +  +TV D+GRGIPV+   K   +  LE + T LHAGGKF    Y++SGGLHGVG  VVN
Sbjct: 79  DNSVTVTDDGRGIPVDIQAK-TGRPALETVYTVLHAGGKFGGGGYKVSGGLHGVGALVVN 137

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPDPKIFGDKAGF 222
           ALS  L VTV R    +   F RG   +P+++         GT++ F+PDP IF +   F
Sbjct: 138 ALSTNLDVTVVRGGKRYYIDFVRGKVNTPMKELGPAPEHEHGTKVHFQPDPDIFTETTTF 197

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L    +  A+L+  +K  ++  +         EK  F++ GGLK+Y+    + +  
Sbjct: 198 DDKVLTTRIRELAFLNKGLKLTFTDKR-----AATHEKLVFHYEGGLKSYVDFLTKKKEN 252

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRG 341
           +  E    + + KG    TVE A+ +  +      ++ N I T EGGTHE+G + ALTR 
Sbjct: 253 LLQEPIYVEGQDKGI---TVEVALQYTNDYHSTLLTFANNIHTYEGGTHETGFKTALTRV 309

Query: 342 IKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  YA  +   +        DD+      ++SV   +P+F GQTKTKL + DA+  V+  
Sbjct: 310 INDYARRSGALKDSDDPLSGDDVREGLTAVVSVKHPDPQFEGQTKTKLGNSDARTVVDRT 369

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
             D F+ +L+++P +   +++  +  S+ RL  ++ RE   +K+ +    LPGKLAD + 
Sbjct: 370 FSDHFNKFLMEHPADGKLIIDKAMLASKARLAAKRAREVTRKKSGLEISNLPGKLADNTS 429

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +ELFIVEGDSAGGSAK  R+R  QA+LP+RGKILNV  A  E+I  N++I  L  
Sbjct: 430 KDPEISELFIVEGDSAGGSAKSGRSRLTQAILPIRGKILNVEKASMERILANEEIRTLFT 489

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+G      +     RY K+IIMTDADVDGAHI +LLLT  Y+ M  +++  ++++  PP
Sbjct: 490 AMGTGFGQDFDISKARYHKLIIMTDADVDGAHIRTLLLTLIYRYMRPVLDAGYVYIAQPP 549

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+R+ QG    Y   +E  Q IL +       K +I R+KGLGEM ASQL ET MD + R
Sbjct: 550 LYRLRQGKMMRYIDSDEELQDILGQLPPS--PKPDIQRYKGLGEMDASQLWETTMDPDTR 607

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685
            LLRV         +        LMG   + R KFI+E A F+D  ++ 
Sbjct: 608 RLLRVS----PKDAEQADGIFEMLMGDHVEPRRKFIEENAVFVDPNNID 652


>gi|303240062|ref|ZP_07326583.1| DNA gyrase, B subunit [Acetivibrio cellulolyticus CD2]
 gi|302592331|gb|EFL62058.1| DNA gyrase, B subunit [Acetivibrio cellulolyticus CD2]
          Length = 641

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 247/655 (37%), Positives = 375/655 (57%), Gaps = 20/655 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
             N + + +Y+ S+I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AGY 
Sbjct: 2   SENANLNLSYNESNIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVYEIMDNSIDEALAGYC 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             IE++++ +  +T +DNGRGIPV  HPK     T+E++ T LHAGGKF    Y +SGGL
Sbjct: 62  TEIEITINPDNSITNIDNGRGIPVGIHPKM-GIPTVEVVHTILHAGGKFGGEGYTVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS+ L V V R   I+ Q++ RG   + LE          T+ TF+PD  
Sbjct: 121 HGVGASVVNALSEYLEVEVYRDGNIYKQRYERGNVATKLEVIGTTEKTG-TKTTFKPDSL 179

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   F    LL   +  A+L+  +       +        P  ++ ++ GG+ ++++
Sbjct: 180 IFEEM-EFSFDILLNRFRELAFLNKGLMITLIDKR-----PEEPIVKKLHYEGGIISFVE 233

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               N+ +I          K G+    VE ++ + +     I S+ N I T EGGTH +G
Sbjct: 234 YMNRNKGVIQEHPIYIDCSKDGS---NVEISMQYNDTYVENIFSFANNIATTEGGTHLTG 290

Query: 334 LRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            + A+T+    YA      +    ++  +D+      ++SV ++EP+F GQTKTKL + +
Sbjct: 291 FKTAITKVFNDYARKYNYLKDNDKNLAGEDIREGLTAVISVKLQEPQFEGQTKTKLGNSE 350

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE  + +    +L +NP     +L+  +  +  R   RK R+   RK+A+    LP
Sbjct: 351 IRSLVEFTVGEKLASFLEENPSVTKTILDKCLTAARAREAARKARDLTRRKSALETTTLP 410

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS+      E++IVEGDSAGGSAKQ R+R  QA+LPL GK+LNV  +  +K+ +N
Sbjct: 411 GKLADCSEKDPSLCEIYIVEGDSAGGSAKQGRDRKFQAILPLWGKMLNVEKSRIDKVYDN 470

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++++ ++ ALG      +  E LRY K+IIM DADVDG HI +LLLTF ++ M  L+E  
Sbjct: 471 EKLLPVITALGASIGDDFDVEKLRYHKIIIMADADVDGQHIRTLLLTFMFRYMKPLVEGG 530

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPLF+I +G +  YA++E+     + E K   K +  I R+KGLGEM   QL E
Sbjct: 531 YVYIAQPPLFKIAKGKEEGYAYNEKQVDNFINE-KGWKKDECSIQRYKGLGEMNPEQLWE 589

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T M+   RT+LRVE++  +       +    LMG K + R +FIQ  A  + ++ 
Sbjct: 590 TTMNPETRTMLRVELSDAI----AADEIFTILMGDKVEPRKEFIQTHAKTVTNLD 640


>gi|258541839|ref|YP_003187272.1| DNA topoisomerase IV subunit B [Acetobacter pasteurianus IFO
           3283-01]
 gi|256632917|dbj|BAH98892.1| DNA topoisomerase IV subunit B [Acetobacter pasteurianus IFO
           3283-01]
 gi|256635974|dbj|BAI01943.1| DNA topoisomerase IV subunit B [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639029|dbj|BAI04991.1| DNA topoisomerase IV subunit B [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642083|dbj|BAI08038.1| DNA topoisomerase IV subunit B [Acetobacter pasteurianus IFO
           3283-22]
 gi|256645138|dbj|BAI11086.1| DNA topoisomerase IV subunit B [Acetobacter pasteurianus IFO
           3283-26]
 gi|256648193|dbj|BAI14134.1| DNA topoisomerase IV subunit B [Acetobacter pasteurianus IFO
           3283-32]
 gi|256651246|dbj|BAI17180.1| DNA topoisomerase IV subunit B [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256654237|dbj|BAI20164.1| DNA topoisomerase IV subunit B [Acetobacter pasteurianus IFO
           3283-12]
          Length = 679

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 359/685 (52%), Positives = 472/685 (68%), Gaps = 16/685 (2%)

Query: 6   IDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMY 65
            DLFS  PP  + S      +G+  D+       ++  YDAS+I +LEGLEPVR RPGMY
Sbjct: 2   SDLFSNTPPARKSS------TGKTRDAKPGTQADSAQAYDASAIEVLEGLEPVRRRPGMY 55

Query: 66  IGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFP 125
           IGGTDE ALHHL +E++DNAMDE +AG+AN I+V LD    LT+ DNGRGIPV+ HP+FP
Sbjct: 56  IGGTDESALHHLAAEILDNAMDEAVAGHANTIDVRLDTENRLTIRDNGRGIPVDPHPRFP 115

Query: 126 NKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFS 185
           ++S LE+ILTTLHAGGKF    Y  SGGLHGVG SVVNALS  + V +AR  T++ Q + 
Sbjct: 116 DRSALEVILTTLHAGGKFSGKAYATSGGLHGVGSSVVNALSTRMEVEIARDRTVWKQVYE 175

Query: 186 RGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
           RG P++ LEK     N+RGT+I+F+PDP+IFG    F  +RL ++ +SKA+L   V   W
Sbjct: 176 RGKPVTKLEKVGAAPNRRGTQISFQPDPEIFGTHV-FVPSRLYRLCRSKAFLFRGVTIRW 234

Query: 246 SCDKEIAEK-YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT----EKKGTHRG 300
           SCD  + +     P +   +FPGGL   L  +L  ++ + + ++ G+        GT  G
Sbjct: 235 SCDPALIKAGDETPAEATLHFPGGLADSLTDELGPKAPLLTPLWAGEAPLPPAADGTDNG 294

Query: 301 TVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359
            VEWA+A+ E  P    SYCNTI T +GGTHE+G R AL +G++ + +    K+A +I +
Sbjct: 295 KVEWAVAFLEHGPASLVSYCNTIPTPQGGTHETGFRNALVKGLRAWGDQRSIKKASAITA 354

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           +D++  + G LSVFIR+P+F GQTK KL S  A + VE ALRD FDH+L QNP +A  LL
Sbjct: 355 EDVLGMSAGRLSVFIRDPQFQGQTKEKLTSSGASKLVETALRDRFDHWLAQNPPQADTLL 414

Query: 420 EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
            + IER+EERLRR++Q+E  RK+A R+LRLPGKL DC++  A  TE+F+VEGDSAGGSAK
Sbjct: 415 GFAIERAEERLRRKEQKETPRKSATRRLRLPGKLTDCTKEFAPDTEIFLVEGDSAGGSAK 474

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
           QARNR  QAVLPLRGKILNVASA +EK+R NQ++ DL++ALGC +  ++    LRY +VI
Sbjct: 475 QARNRETQAVLPLRGKILNVASATAEKLRGNQELRDLIEALGCGSGDRFDLSKLRYGRVI 534

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599
           IMTDADVDGAHIASLL+TFFY+E+ +LI   HL+L  PPL+R+TQG KSVYA D+  + +
Sbjct: 535 IMTDADVDGAHIASLLMTFFYRELPELIRNGHLYLAQPPLYRLTQGAKSVYAMDDADRDR 594

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
            ++   K  +GKI++SRFKGLGEM    LKET MD  +RTLLRV   +       T+  +
Sbjct: 595 KMKTEFK-ARGKIDVSRFKGLGEMPPGDLKETTMDPKRRTLLRVITPQ--EDRLSTRQRV 651

Query: 660 NKLMGTKADERFKFIQERASFIDDV 684
             LMG K + RF FIQE A  +DD+
Sbjct: 652 ESLMGRKPELRFAFIQEHARTVDDL 676


>gi|144898429|emb|CAM75293.1| DNA gyrase subunit B [Magnetospirillum gryphiswaldense MSR-1]
          Length = 756

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 351/651 (53%), Positives = 462/651 (70%), Gaps = 10/651 (1%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y A  I +LEGLEPVR RPGMYIGGTD++ALHHL +EV+DN+MDE +AG+A+ IE+ LD
Sbjct: 107 EYSAKDIEVLEGLEPVRRRPGMYIGGTDDRALHHLVAEVLDNSMDEAVAGHASWIELELD 166

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G  TV DNGRGIPV+ HPKFP+KS LE+ILTTLH+GGKF    Y++SGGLHGVG+SVV
Sbjct: 167 VSGHATVRDNGRGIPVDPHPKFPDKSALEVILTTLHSGGKFGGDAYKVSGGLHGVGVSVV 226

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALSD L V VAR   ++ Q FS+G PL PL     V+N+RGT + F PDP+IFGD+A  
Sbjct: 227 NALSDSLVVEVARDRQLWRQSFSKGAPLGPLSLVGPVQNRRGTALRFHPDPEIFGDRARL 286

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-YGIPEKEEFYFPGGLKTYLQTKLENRS 281
            A  L +M +SKAYL   V+  W CD  + +    IP ++  +FP GL  +L   +++R 
Sbjct: 287 KARTLYRMARSKAYLFRGVQIRWKCDPLLIDDGDDIPAEDILHFPNGLADFLAAVMKDRP 346

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT--SYCNTILTDEGGTHESGLRVALT 339
           L++   F G         G VEWA+ W +++ +    +YCNT+ T EGGTHE+GLR ALT
Sbjct: 347 LVTRGFFAGTAPLADDM-GQVEWALVWPDDDEDGFVNTYCNTVPTPEGGTHEAGLRNALT 405

Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +G++ Y +L  NK+A  + ++D+M  A  ++S+FIR+P+F GQTK KLVS +A R VENA
Sbjct: 406 KGLRGYGDLLGNKKAGQVTAEDVMGGACVLVSLFIRDPQFQGQTKEKLVSTEATRLVENA 465

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
           ++D FDH+L  +P     L+  +IE++EERLR++  +E +RKTA +KLRLPGKLADCS+ 
Sbjct: 466 IKDHFDHWLSADPESGKALMARLIEKAEERLRKKVAKETSRKTATKKLRLPGKLADCSRQ 525

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
           +  GTELF+VEGDSAGGSAKQ RNR  QA+LPL+GKILNVASA ++K+R NQ+I DL++A
Sbjct: 526 VNVGTELFLVEGDSAGGSAKQGRNRETQAILPLKGKILNVASASADKLRANQEIKDLMEA 585

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           LGC +R  +  E LRYE++IIMTDADVDGAHIASLL+TFFYQEM +LI   HLFL  PPL
Sbjct: 586 LGCGSRESFDAEKLRYERIIIMTDADVDGAHIASLLMTFFYQEMPELIRTGHLFLAMPPL 645

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           +R+  G   +YA D+ HK ++++     GK  IEISRFKGLGEM  +QLKET M+   RT
Sbjct: 646 YRLAHGQTVIYARDDSHKDELMKTVFA-GKKNIEISRFKGLGEMPPAQLKETTMNPANRT 704

Query: 640 LLRVEI-----NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           L+RV I      +D    KD  + +  LMG K + RF +IQ+ A F  D+ 
Sbjct: 705 LIRVTIPAGRTEEDQEEAKDVANLVETLMGKKPELRFHYIQKHAKFARDLD 755


>gi|229917451|ref|YP_002886097.1| DNA gyrase, B subunit [Exiguobacterium sp. AT1b]
 gi|229468880|gb|ACQ70652.1| DNA gyrase, B subunit [Exiguobacterium sp. AT1b]
          Length = 642

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 248/656 (37%), Positives = 364/656 (55%), Gaps = 20/656 (3%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           +  N+     Y A  I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AGY
Sbjct: 2   SNENEKELQAYGADQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVWEIVDNSIDEALAGY 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
            + I V+++    + V DNGRGIPV+   K   +  +E+I T LHAGGKF    Y++SGG
Sbjct: 62  CDTITVTVEPGNSIVVEDNGRGIPVDVQKK-TGRPAVEVIFTVLHAGGKFGGGGYKVSGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG SVVNALS +L V V R   ++ Q F RG+P   LE          T + F PD 
Sbjct: 121 LHGVGASVVNALSTKLEVFVRRDGNVYYQSFKRGVPQGELEIVGTTDTTG-TTVRFFPDG 179

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF +   +D   L    +  A+L+  ++     D+          +  +++ GG+K+Y+
Sbjct: 180 DIFQETLEYDFDLLATRLRELAFLNKGLRIVAKDDR-----NDETIERNYHYEGGIKSYV 234

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +    +++ I  E       K G     VE A+ + E     I S+ N I T EGGTHE+
Sbjct: 235 EHLNRSKASIHEEPVYVHGTKDGI---EVEIALQYNEGFASNIYSFTNNIPTHEGGTHET 291

Query: 333 GLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G + ALTR I  YA+     +    S+  DD+      I+SV    P+F GQTKTKL + 
Sbjct: 292 GFKTALTRSINDYAKRFGLMKEADGSLSGDDVREGLTAIVSVKHPAPQFEGQTKTKLGNA 351

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRL 449
           DA+   +    D F+ +L++NP     +++  ++        +R +    RK  +    L
Sbjct: 352 DARTATDTLFSDTFEQFLLENPSVGRLIVDKGLMAARARLAAKRAREMTRRKGILEVSSL 411

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADCS   A  +EL+IVEGDSAGGSAK  R+R  QA+LP+RGKI+NV  A  +KI  
Sbjct: 412 PGKLADCSSKDASKSELYIVEGDSAGGSAKSGRDRHFQAILPIRGKIINVEKARLDKILA 471

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           NQ++  ++ ALG     ++     RY K+IIMTDADVDGAHI +LLLTFFY+ M  L+E 
Sbjct: 472 NQEVRTIITALGTGIADEFDLSKARYHKLIIMTDADVDGAHIRTLLLTFFYRYMRPLVES 531

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
            ++++  PPL+ +  G +++Y  ++   Q  + +  ++ +    + R+KGLGEM   QL 
Sbjct: 532 GYVYIAQPPLYGVKHGKETIYVQNDRELQAAIAQLPENAR--YSVQRYKGLGEMDPEQLW 589

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            T M+   R++LRV    DL    +  +    LMG   + R  FIQ  A ++ ++ 
Sbjct: 590 NTTMNPETRSMLRV----DLQDAIEADEIFETLMGDNVEPRRDFIQSHAHYVKNLD 641


>gi|83312449|ref|YP_422713.1| DNA topoisomerase IV subunit B [Magnetospirillum magneticum AMB-1]
 gi|82947290|dbj|BAE52154.1| Type IIA topoisomerase, B subunit [Magnetospirillum magneticum
           AMB-1]
          Length = 666

 Score =  607 bits (1566), Expect = e-171,   Method: Composition-based stats.
 Identities = 357/655 (54%), Positives = 467/655 (71%), Gaps = 10/655 (1%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
             +  Y A  I +LEGLEPVR RPGMYIGGTD++ALHHL +EV+DNAMDE +AG+A  IE
Sbjct: 13  PKATEYSAKDIEVLEGLEPVRRRPGMYIGGTDDRALHHLVAEVLDNAMDEAVAGHAGWIE 72

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           + L  +G  TV DNGRGIPV+ HPK+P+KS LE+ILTTLH+GGKF    Y++SGGLHGVG
Sbjct: 73  LELAVDGTCTVRDNGRGIPVDPHPKYPDKSALEVILTTLHSGGKFGGDAYKVSGGLHGVG 132

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALSD L V VAR   ++SQ+FSRG+PL PLEK   V+N+RGT + F PD +IFG+
Sbjct: 133 VSVVNALSDALTVEVARDRVLWSQRFSRGLPLGPLEKVGPVQNRRGTTVIFHPDAQIFGE 192

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +A      L +M +SKAYL   V+  W CD   I +   IP ++  +FPGGL  +L+  L
Sbjct: 193 RAQLRPGPLYRMARSKAYLFRGVQIRWKCDPLLIKDGDEIPAEDTLHFPGGLTDFLKAVL 252

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT--SYCNTILTDEGGTHESGLR 335
           + R L++ ++F G         G VEWA+AW +++ E    +YCNT+ T EGGTHE+G R
Sbjct: 253 KERPLVTKDMFQGTAPLADDM-GQVEWALAWPDDDEEGFVNTYCNTVPTPEGGTHEAGFR 311

Query: 336 VALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
             LT+G++ Y E+  NK+A  I ++D+M+ A  ++S+FIR+P+F GQTK KL S +A R 
Sbjct: 312 NLLTKGLRSYGEMAGNKKAGQITAEDVMVGACVMVSLFIRDPQFQGQTKEKLASPEATRL 371

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           VENA++D FDH+L  +   A  LL  +IE++E+R RRR+ +E+NRKT  ++LRLPGKLAD
Sbjct: 372 VENAVKDHFDHWLSGDKASAGALLTRLIEKAEDRARRRQAKEMNRKTPTKRLRLPGKLAD 431

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS+++  GTELF+VEGDSAGGSAK  RNR  QA+LPLRGKILNVASA ++K+R NQ++ D
Sbjct: 432 CSRSVNVGTELFLVEGDSAGGSAKSGRNRETQAILPLRGKILNVASASTDKLRQNQELKD 491

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           L++ALGC  R  Y +E LRYEK+IIMTDADVDGAHIASLL+TFFYQEM +LI   HL+L 
Sbjct: 492 LMEALGCGARDNYDDEKLRYEKIIIMTDADVDGAHIASLLMTFFYQEMPELIRNGHLYLA 551

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+R+  G    Y  D+ HK+++L+    + K  +EISRFKGLGEM  +QLKET MD 
Sbjct: 552 LPPLYRLAHGQIVAYGRDDAHKEELLKTLFAN-KKNVEISRFKGLGEMPPAQLKETTMDP 610

Query: 636 NKRTLLRVEI-----NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           ++RTLLRV I      +D    KD    +  LMG K + RF FIQERA F  D+ 
Sbjct: 611 SRRTLLRVTIPSGRTEEDHEEAKDVARLVESLMGRKPELRFAFIQERARFATDLD 665


>gi|312869236|ref|ZP_07729408.1| DNA gyrase, B subunit [Lactobacillus oris PB013-T2-3]
 gi|311095257|gb|EFQ53529.1| DNA gyrase, B subunit [Lactobacillus oris PB013-T2-3]
          Length = 648

 Score =  607 bits (1566), Expect = e-171,   Method: Composition-based stats.
 Identities = 247/661 (37%), Positives = 377/661 (57%), Gaps = 20/661 (3%)

Query: 30  PDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEV 89
            D         +  YDAS I++L+GL+ VR RPGMYIG T  + LHHL  E++DN +DE 
Sbjct: 2   SDEQKETKAQLASEYDASQIQVLKGLDAVRKRPGMYIGSTSAQGLHHLVWEIVDNGIDEA 61

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
           +AG+   I V ++ +  +TV DNGRGIPV+   +   K  LE + T LHAGGKF    Y+
Sbjct: 62  LAGFCTEINVEVNPDNSITVRDNGRGIPVDIQGQ-TGKPALETVFTVLHAGGKFGGGGYK 120

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRI 207
           +SGGLHGVG SVVNALS EL V VARQ   +   F  G   + ++        +  GT +
Sbjct: 121 VSGGLHGVGASVVNALSTELDVKVARQGKEYYMDFDHGHVKTSMKVINDHLAEDIHGTTV 180

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PDP IF +   ++   L    +  A+L+  +K      ++       PE+++F++ G
Sbjct: 181 HFKPDPAIFRETTVYNIKTLTNRLRELAFLNKGLKITIEDKRDD-----EPERQDFHYEG 235

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G++ Y+    E+++ +       + ++ G    TVE ++ + +    E+ ++ N I T E
Sbjct: 236 GIRHYVDYLNEDKTTLFEPPIYVEGKENGI---TVEVSLQYTDSYRSELLTFTNNIHTYE 292

Query: 327 GGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GGTHE+G ++ALTR I  Y       K   ++  DD+      ++S+   +P+F GQTKT
Sbjct: 293 GGTHETGFKMALTRVINDYGHKANILKSNETLSGDDVREGMTAVVSIKHPDPQFEGQTKT 352

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444
           KL + DA+   ++     F+ +L+++P EA +++E     S+ R+  ++ RE   +K+ +
Sbjct: 353 KLGNSDARTATDHVFAATFNRFLMEHPDEARQIIEKGQLASKARVAAKRAREVTRKKSGL 412

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLAD +    + +ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  
Sbjct: 413 EISNLPGKLADNTSKDPNISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKATL 472

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           +++  N++I  L  ALG      +  +   Y K+IIMTDADVDGAHI +LLLT  Y+ M 
Sbjct: 473 DRVLANEEIRSLFTALGTGFGEDFDIDKANYHKLIIMTDADVDGAHIRTLLLTLIYRFMR 532

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
            +I   ++++  PPL+++ QG    Y   +E  ++++   +     K  I R+KGLGEM 
Sbjct: 533 PMITHGYVYIAQPPLYQVRQGKFVRYIESDEELEQVVSSLQPS--PKPVIQRYKGLGEMD 590

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           A QL ET MD   R LLRV+++      +   +    LMGTK   R  FI++ A F++++
Sbjct: 591 AEQLWETTMDPENRHLLRVQLDD----AEQANEIFPMLMGTKVGPRRDFIEQNAKFVENL 646

Query: 685 G 685
            
Sbjct: 647 D 647


>gi|326692337|ref|ZP_08229342.1| DNA gyrase, B subunit [Leuconostoc argentinum KCTC 3773]
          Length = 669

 Score =  607 bits (1566), Expect = e-171,   Method: Composition-based stats.
 Identities = 253/660 (38%), Positives = 376/660 (56%), Gaps = 22/660 (3%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
            A    + + +Y+A  I++LEGLE VR RPGMYIG T  + LHHL  E++DN +DE +AG
Sbjct: 24  SASTVDANAGDYNADQIQVLEGLEAVRKRPGMYIGTTTAQGLHHLVWEIVDNGIDEALAG 83

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           +A+ I V+++ +  +TV D+GRGIPV+   K   K  LE + T LHAGGKF    Y++SG
Sbjct: 84  FASHITVTIEKDNSITVTDDGRGIPVDIQTK-TGKPALETVFTVLHAGGKFGGGGYKVSG 142

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRP 211
           GLHGVG SVVNALS +L V V R   ++   F  G   + + K ++V   +RGT + F+P
Sbjct: 143 GLHGVGASVVNALSTDLDVRVVRDGQVYYMDFQVGRVNTNMVKLDEVPTIERGTIVHFKP 202

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           D  IF +   ++   LL   +  A+L+  ++   +  +        P  E FYF GG+K 
Sbjct: 203 DADIFRETTVYNYNTLLTRVRELAFLNKGLRISITDKR-----PEEPVTESFYFEGGIKE 257

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTH 330
           Y+      ++++  E    + E+ G     VE A+ +  +    + ++ N I T EGGTH
Sbjct: 258 YVNYLNAEKTVVFPEPVYVEGEENGI---VVEVALQYTTDVKDSLRTFTNNINTYEGGTH 314

Query: 331 ESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           E+G + ALTR I  YA      +    S+  +D+      I+S+   +P+F GQTKTKL 
Sbjct: 315 ETGFKTALTRVINDYARKNGQLKENAESLTGEDVREGMTAIVSIKHPDPQFEGQTKTKLG 374

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKL 447
           + DA++  +    + F  ++++NP  A +++E  I   + RL  ++ RE+  +++ +   
Sbjct: 375 NSDARQATDRMFSETFSRFMMENPSVAKQIVEKGILAQKARLAAKRAREMTRKQSGLEIG 434

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLAD + N    +ELFIVEGDSAGGSAKQ RNR  QA+LP+RGKILNV  A  +K+
Sbjct: 435 NLPGKLADNTSNDPAISELFIVEGDSAGGSAKQGRNRLTQAILPIRGKILNVEKATLDKV 494

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N++I  +  A+G     ++  E   Y KVIIMTDADVDGAHI +LLLT FY+ M  LI
Sbjct: 495 LANEEIRTIFTAMGTGFGDEFNVEKANYHKVIIMTDADVDGAHIRTLLLTLFYRYMRPLI 554

Query: 568 EQKHLFLISPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           +  ++++  PPL+ +  G      Y   +E  +  L +   + K K  + R+KGLGEM  
Sbjct: 555 DAGYIYIAQPPLYGVALGNSKTREYLDSDEELEDFLAQLPANIKPK--VQRYKGLGEMDF 612

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL +T MD   R LLRV    D    +      + LMG     R +FI+E A F++++ 
Sbjct: 613 DQLADTTMDPLHRRLLRV----DPADAEAADSIFDMLMGDDVAPRREFIEENAVFVENLD 668


>gi|325478798|gb|EGC81908.1| DNA gyrase, B subunit [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 633

 Score =  607 bits (1566), Expect = e-171,   Method: Composition-based stats.
 Identities = 263/649 (40%), Positives = 378/649 (58%), Gaps = 23/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            +NYDA +IR+LEGLEPVR+RPGMYIG T E+ LHHL  EV+DN++DE +AG  + I+V 
Sbjct: 3   ENNYDAGNIRVLEGLEPVRLRPGMYIGSTSERGLHHLVYEVVDNSVDEALAGRCDYIKVI 62

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  +TV D+G GIPV+ HP   +KSTLE +LT LHAGGKFD+  Y+ SGGLHGVG+S
Sbjct: 63  VSKDNIITVEDDGSGIPVKEHP-TTHKSTLETVLTVLHAGGKFDDKAYQFSGGLHGVGVS 121

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ L   V R   I+   FSRG   S LE     +   GT+ITF+PD +IF    
Sbjct: 122 VVNALSEYLIAEVKRDGHIYKMSFSRGEVTSELEVIGDTKE-TGTKITFKPDAEIFDTTI 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   L    +  A+L+  V+  +   +E          E F F GG+  +++    N+
Sbjct: 181 -FDRKTLENRFREMAFLNKGVEIIFEDQRE-------DFSESFKFDGGISEFVKYLNRNK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + I   I      ++      VE +  + +     I +Y N I T EGGTH SG R ALT
Sbjct: 233 TPIMDVIPHFDGMQEDI---EVEVSFQYTDGYSENILTYANNIHTPEGGTHLSGFRSALT 289

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  YA   +   +   ++  +D+      I+SV I EP+F GQTK KL + + +  V+
Sbjct: 290 RTVNDYARNFKFIKENEDNLQGEDIREGITAIISVKISEPQFEGQTKAKLGNSEVRGAVD 349

Query: 398 NALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
             +      +L +NP  A  ++ + +  R      R+ +    +++ +    LPGKLADC
Sbjct: 350 TFVSQRLQAFLEENPKPAKAIIEKALASRRAREAARKARDLTRKRSILDSTTLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
                   E+FIVEG+SAGGSAK  R+   QA+LPLRGKI+NV  A  ++I N+++I  +
Sbjct: 410 QSTDLAENEIFIVEGNSAGGSAKGGRDNRIQAILPLRGKIMNVEKANLDRILNSEEIKAM 469

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A G     ++    LRY K+IIMTDADVDGAHI +LLLTFFY+ M  LI++ H+++  
Sbjct: 470 ITAFGTGIGKEFDISKLRYGKIIIMTDADVDGAHIRTLLLTFFYRYMKPLIDEGHVYVAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL++I+ G    Y + +  + K+L+E         +I+R+KGLGEM A QL +T MD +
Sbjct: 530 PPLYKISHGRNERYVYTDAERDKVLKEL---DVENYKINRYKGLGEMNADQLWDTTMDPD 586

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            R LLRV  + +  S   T D+ + LMG K + R  FIQE A ++ ++ 
Sbjct: 587 HRVLLRVNEDFESTS---TDDTFSLLMGEKVEPRRNFIQENAKYVSNID 632


>gi|15829210|ref|NP_326570.1| DNA gyrase subunit B [Mycoplasma pulmonis UAB CTIP]
 gi|14090154|emb|CAC13912.1| DNA GYRASE SUBUNIT B [Mycoplasma pulmonis]
          Length = 644

 Score =  607 bits (1566), Expect = e-171,   Method: Composition-based stats.
 Identities = 258/655 (39%), Positives = 381/655 (58%), Gaps = 23/655 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           S ++ Y+AS+I++L+GLEPVR RPGMYIG T +K LHHL  E++DN++DE +AG+A+ I 
Sbjct: 4   SKNNQYNASNIQVLKGLEPVRKRPGMYIGTTGKKGLHHLIWEIVDNSVDETMAGFASQIT 63

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           ++LD +  +T+ D+GRGIPV+ HP+    ST+E +LT LHAGGKFD+ +Y++SGGLHGVG
Sbjct: 64  ITLDNDNLITIEDDGRGIPVDRHPE-TGISTVETVLTVLHAGGKFDSESYKVSGGLHGVG 122

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV--RNKRGTRITFRPDPKIF 216
            SVVNALS  L   + R N +   +F  G  +    +       ++ GT+I+F+PD  I 
Sbjct: 123 ASVVNALSTNLKAWIKRHNKLHYVEFHDGGKILKPLEVISELESDQTGTKISFQPDFSIM 182

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                FD   +    +  AYL+ ++      ++       +   ++FYF GG+  Y++  
Sbjct: 183 EKN-DFDLEVVKDRAKQLAYLNKQLVINVVDNR-------VGYTKQFYFEGGIVDYIKEL 234

Query: 277 LENRSLISSEIFTGKTEK--KGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESG 333
            +++ ++  +    +     +      VE AI + +       SY N ILT EGGTHE G
Sbjct: 235 NKSKKVLHDQTIYSEGANVLEDNPEVIVEVAIQYTDSYQSNIVSYANNILTIEGGTHEQG 294

Query: 334 LRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
               L R + K+A      +     +I DD+      I+S+   +P F GQTK KL + D
Sbjct: 295 FFDGLVRILNKFATNLGLVKLEEEKLIRDDVKEGISAIISIKHVDPIFEGQTKGKLGNKD 354

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLP 450
           A+  V       F+ +L +NP+EA  ++  VI   + R+     RE   RK+A     LP
Sbjct: 355 ARIAVNKIFSKNFERFLNENPVEAKNIILKVINARKARMAGLLAREAVRRKSAFDISSLP 414

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS   A  +EL+IVEG+SAGGSAK  R+R  QA+LPLRGK++N      EK+ NN
Sbjct: 415 GKLADCSSKNAEISELYIVEGNSAGGSAKMGRDREFQAILPLRGKVINAEKNNIEKVFNN 474

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  L+ ALG     ++    LRY K+IIMTDADVDGAHI +LLLTFFY+    LIE  
Sbjct: 475 EEIQSLIIALGTGIAEEFNINKLRYHKIIIMTDADVDGAHIRTLLLTFFYRYFKPLIEYG 534

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
            +++  PPL++I+   KS YA+++E K++IL   K     K+ I R+KGLGEM   QL +
Sbjct: 535 FVYIAQPPLYKISISGKSRYAYNDEQKEEILANIK--DVSKVAIQRYKGLGEMDPDQLWD 592

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T MD   RT+L+V+I            +   LMG +   R +FI++ A ++ ++ 
Sbjct: 593 TTMDPGIRTMLQVQIED----AAKADWTFTTLMGGEVAPRREFIEQNAKYVKNID 643


>gi|224541292|ref|ZP_03681831.1| hypothetical protein CATMIT_00452 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525796|gb|EEF94901.1| hypothetical protein CATMIT_00452 [Catenibacterium mitsuokai DSM
           15897]
          Length = 641

 Score =  607 bits (1566), Expect = e-171,   Method: Composition-based stats.
 Identities = 252/650 (38%), Positives = 370/650 (56%), Gaps = 21/650 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           ++YD S I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AG+ N I V L
Sbjct: 6   EHYDESDIQVLEGLEAVRKRPGMYIGTTSARGLHHLVWEIVDNSIDEALAGFCNKIRVVL 65

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
                + V+DNGRG+P   + K   K+T+E I T LHAGGKF    Y++SGGLHGVG SV
Sbjct: 66  LPGDVVKVIDNGRGMPTGMNVK-TGKNTIETIFTVLHAGGKFGGGGYKVSGGLHGVGASV 124

Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDK 219
           VNALS+ L V V R+  I+ Q+F  G  P+  L+        + GT + F+ DP+IF + 
Sbjct: 125 VNALSEWLEVYVHREGHIYYQRFENGGTPVGSLKVVGDCEQEETGTTVVFKADPEIFTET 184

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             +D   L +  +  A+L+  +K     ++    K        +++ GGL+ Y+    +N
Sbjct: 185 TVYDYGVLSQRLRELAFLNKGLKLVLEDERLDPAKVDE-----YHYEGGLREYVAFLNKN 239

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           ++ +   I   +      +  +VE A+ + +       S+CN I T EGGTHE G R+AL
Sbjct: 240 KTPLHDHIIDCE---DTMNDISVEIAMQYNDGYQPNIYSFCNNINTHEGGTHEEGFRLAL 296

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR I  YA+       +  S+  DD       I+SV   +P++ GQTKTKL + + ++ V
Sbjct: 297 TRVINNYAKSHNFLKDKDESLSGDDCREGLTAIVSVKHPDPQYEGQTKTKLGNAEVRKIV 356

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLAD 455
              L +  D +L++NP  A  +++ V   S+ R+  ++ RE+  RKTA+    LPGKLAD
Sbjct: 357 STILANALDKFLLENPDTAKIIMDKVTLASKARMAAKRAREMTRRKTALDVSNLPGKLAD 416

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS       E+FIVEGDSAGGSAK  R+R  QA+LPLRGKILNV  A  E+I  N +I  
Sbjct: 417 CSSKDPSECEIFIVEGDSAGGSAKSGRDRKIQAILPLRGKILNVEKARLERILGNAEIRS 476

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ A G     ++    LRY K++IMTDADVDG HI  L+LTF Y+ +  LIE  +++  
Sbjct: 477 MITAFGTGIGDEFDINKLRYHKIVIMTDADVDGGHIRILMLTFLYRYLKPLIENGYVYAA 536

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+ +  G    Y + +    K+ EE   +   K  I R+KGLGEM   QL ET M+ 
Sbjct: 537 QPPLYLLRHGKDDHYLYSDYELDKLKEELGPN--AKYTIQRYKGLGEMNPEQLWETTMNP 594

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             R L R++++  +          + LMG + + R  FI+E A +++++ 
Sbjct: 595 ENRVLNRIQLDDAM----QADQLFDMLMGERVEPRRDFIRENAKYVENLD 640


>gi|253681222|ref|ZP_04862020.1| DNA gyrase, B subunit [Clostridium botulinum D str. 1873]
 gi|253562460|gb|EES91911.1| DNA gyrase, B subunit [Clostridium botulinum D str. 1873]
          Length = 636

 Score =  607 bits (1566), Expect = e-171,   Method: Composition-based stats.
 Identities = 252/646 (39%), Positives = 380/646 (58%), Gaps = 21/646 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YD S I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AG+   I+V +  
Sbjct: 7   YDESQIQVLEGLEAVRKRPGMYIGSTGIRGLHHLVYEIVDNSIDEALAGFCQNIKVYIHK 66

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +  +TV D+GRG+PV  HPK   + T+E+I+T LHAGGKF    Y++SGGLHGVG SVVN
Sbjct: 67  DNSVTVKDDGRGMPVGIHPKM-KRPTVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVN 125

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS    V V R+  I+ Q++ +G   S LE      +++GT + F PD +IF +   FD
Sbjct: 126 ALSKYCKVEVRREGHIWMQEYKKGKVASELEIIGD-SDEKGTLVYFEPDDEIFEEV-QFD 183

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L    +  A+L+  ++     ++E  +K      +EF++ GG+K+++     N+  +
Sbjct: 184 YDTLAHRLRELAFLNKGIRITLIDEREEEKK------QEFHYEGGIKSFVSYLNRNKQTL 237

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
             +    +  K       VE A+ + +     I ++ N I T EGGTH +G + ALTR +
Sbjct: 238 HEDPIYVEGNKDD---YLVEVALQYNDTYNDNIFAFANNIDTIEGGTHLAGFKSALTRAL 294

Query: 343 KKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             YA      +    ++  DD       ++SV + +P+F GQTKTKL + + +  V++ +
Sbjct: 295 NDYARRYGYLKEADKNLSGDDTREGLTAVISVKLTDPQFEGQTKTKLGNTEVRGIVDSIV 354

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQN 459
            +    +L +NP  A  ++E  +  +  R   +K RE   RK+ +    LPGKLADCS  
Sbjct: 355 FERVSEFLEENPNTAKTVIEKSLTAARAREAAKKARELTRRKSVLESTALPGKLADCSSK 414

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
                E++IVEGDSAGGSAKQ R+R  QA+LPLRGKI+NV     +KI N++QI  ++ A
Sbjct: 415 DPSECEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKIMNVEKQRLDKILNSEQIRAMITA 474

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
            G      +  E +RY ++IIMTDADVDGAHIA+LLLTFFY+ M +L+E  H+++  PPL
Sbjct: 475 FGAGIGKDFDIEKIRYHRIIIMTDADVDGAHIATLLLTFFYRYMRELVEGGHVYIAQPPL 534

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           +++ +G    Y++ +   Q++L E     K   EI R+KGLGEM A+QL +T M+   RT
Sbjct: 535 YQVKKGKIIRYSYSDNELQQVLTEIGGKDKNT-EIQRYKGLGEMDATQLWDTTMNPEHRT 593

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           L++V I+  +       +    LMG K + R +FI+E A  + ++ 
Sbjct: 594 LVKVTIDDAMR----ADEIFTILMGDKVEPRREFIEENAKRVVNLD 635


>gi|28896290|ref|NP_802640.1| DNA gyrase subunit B [Streptococcus pyogenes SSI-1]
 gi|161485752|ref|NP_664280.2| DNA gyrase subunit B [Streptococcus pyogenes MGAS315]
 gi|73919729|sp|Q8K840|GYRB_STRP3 RecName: Full=DNA gyrase subunit B
 gi|28811541|dbj|BAC64473.1| putative DNA gyrase B subunit [Streptococcus pyogenes SSI-1]
          Length = 650

 Score =  607 bits (1566), Expect = e-171,   Method: Composition-based stats.
 Identities = 255/652 (39%), Positives = 377/652 (57%), Gaps = 24/652 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +     YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I
Sbjct: 9   EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHI 68

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF   +Y++SGGLHGV
Sbjct: 69  KVFIEADNSITVVDDGRGIPVDIQVK-TGRPAVETVFTVLHAGGKFGGGSYKVSGGLHGV 127

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS +L V V +   I  Q+F RG  ++ LE          T + F PDP+IF 
Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVIGTTDVTG-TTVHFTPDPEIFT 186

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   FD + L K  Q  A+L+  +K   +  +   E     ++E F++ GG+ +Y++   
Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGME-----QEEHFHYEGGIGSYVEFLN 241

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           + + +I         E +G     VE A+ +       + S+ N I T EGGTHE G R 
Sbjct: 242 DKKDVIFETPIYTDGELEGI---AVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRA 298

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA+  +   +   ++  +D+      ++SV    P+F GQTKTKL + +  +
Sbjct: 299 ALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
                  + F  +L++NP  A K++E  I  S+ R+  ++ RE   +K+ +    LPGKL
Sbjct: 359 ITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS N A+  ELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I
Sbjct: 419 ADCSSNDANQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 478

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             L  A+G    + +     RY+K++IMTDADVDGAHI +LLLT  Y+ M  ++E  +++
Sbjct: 479 RSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVY 538

Query: 574 LISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           +  PP++ +  G++   Y       E+  +  LE++   G+ K  + R+KGLGEM   QL
Sbjct: 539 IAQPPIYGVKVGSEIKEYIQPGIDQEDQLKTALEKYS-IGRSKPTVQRYKGLGEMDDHQL 597

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET MD   R + RV ++       +     + LMG + + R  FI+E A +
Sbjct: 598 WETTMDPENRLMARVTVDD----AAEADKVFDMLMGDRVEPRRDFIEENAVY 645


>gi|216263495|ref|ZP_03435490.1| DNA gyrase, B subunit [Borrelia afzelii ACA-1]
 gi|215980339|gb|EEC21160.1| DNA gyrase, B subunit [Borrelia afzelii ACA-1]
          Length = 634

 Score =  607 bits (1565), Expect = e-171,   Method: Composition-based stats.
 Identities = 244/647 (37%), Positives = 368/647 (56%), Gaps = 19/647 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY AS+I++L+GLE VR RPGMYIG      LHHL  EVIDN++DE +AG+ + I+V ++
Sbjct: 2   NYVASNIQVLKGLEAVRKRPGMYIGSVSVNGLHHLVYEVIDNSIDEALAGFCDRIDVIIN 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV+DNGRGIP + H +    S LE++LT LH+GGKF+  TY++SGGLHGVGISVV
Sbjct: 62  LDNTITVIDNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L V + R   IF Q FS+GIP S +E   +     GT++TF  D +IF     +
Sbjct: 121 NALSSFLEVYINRDGKIFRQTFSKGIPTSKVEVVGESS-ITGTKVTFLADSEIFETL-DY 178

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L K  +  A+L+ ++       +   EK        FYF GG+K+++     +   
Sbjct: 179 NFDVLEKRLKELAFLNDKICISIEDKRFGKEKSSK-----FYFEGGIKSFVDYLTNDSKA 233

Query: 283 ISSEIFTGKT-EKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
             SE +              ++W  ++ +    I S+ N I T EGGTH  G R  LT+ 
Sbjct: 234 YQSESYYIDGLINDVIVNVGLKWTESYSDN---ILSFVNNINTREGGTHVMGFRSGLTKA 290

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + +  + ++   K   ++  DD       ++SV + EP+F GQTK+KL + + ++ VE  
Sbjct: 291 MNEAFKNSKISKKDVPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIKKIVEII 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458
           + +     +  NP+E   +L   I+ +  R   RK R    +K A   L LPGKLADC+ 
Sbjct: 351 VYEHLLKIINLNPLEIDLILGKAIKAARAREAARKARESERKKNAFESLALPGKLADCTS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E++IVEGDSAGGSAK  RNR  QA+LPL GK+LNV     +K+  N +++ ++ 
Sbjct: 411 KNPLEREIYIVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           +LG      +    LRY K+IIM DADVDG+HI +LLL FF++ M +LIE  ++++  PP
Sbjct: 471 SLGAGVGKTFDITKLRYHKIIIMADADVDGSHIRTLLLAFFFRYMRELIENGYIYIAMPP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L++I    +  Y +DE+ K+K L   +   +  I + R+KGLGEM  +QL ET MD  +R
Sbjct: 531 LYKIKYDNRIYYFYDEKEKEKFLNSIEAKNRNSILLQRYKGLGEMNPTQLWETTMDPARR 590

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +  + I+  +    + +     LMG   + R +FI++ A  + ++ 
Sbjct: 591 KMRLMNIDDAV----EAEKIFVTLMGDLVEPRKEFIEQNALNVINLD 633


>gi|15614703|ref|NP_243006.1| DNA topoisomerase IV subunit B [Bacillus halodurans C-125]
 gi|10174759|dbj|BAB05859.1| DNA topoisomerase IV subunit B [Bacillus halodurans C-125]
          Length = 655

 Score =  607 bits (1565), Expect = e-171,   Method: Composition-based stats.
 Identities = 235/649 (36%), Positives = 363/649 (55%), Gaps = 34/649 (5%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DE +AGY + I V++  
Sbjct: 9   YNDDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALAGYGSNINVTIHK 68

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +  ++V D GRG+P   H     K T E+ILT LHAGGKF    Y  SGGLHGVG SVVN
Sbjct: 69  DQSVSVRDEGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYATSGGLHGVGASVVN 126

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS+ L V + R   ++ Q+F  G   S   +K+    + GT I F+PDP +F     F+
Sbjct: 127 ALSEWLIVEIKRDGWVYEQRFENGGKPSTTLEKKGKTRQTGTTIHFKPDPTVFSTTN-FN 185

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L +  +  A+L   +K      ++  +       E F++  G+K +++   E++  +
Sbjct: 186 VETLSERLREAAFLLKGLKIELVDLRDDTK-------EVFHYEDGIKAFVEYLNEDKETL 238

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
              +     E  G     +E+A  + +     + S+ N + T +GGTHE G + A+TR +
Sbjct: 239 HPVV-FFNGESNGI---EIEFAFQFNDGYTENVLSFVNNVRTKDGGTHELGAKTAMTRAV 294

Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVEN 398
            +YA   +   ++  ++   D+      ++SV + E   +F GQTK KL + +A+  V++
Sbjct: 295 NEYARKAKLLKEKDKNLDGSDIREGFTALISVRVPEEKLQFEGQTKGKLGTPEARSAVDS 354

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGKLAD 455
            + +    +  +NP  ++ L+   I+ ++ R   RK RE  R     + R     GKL  
Sbjct: 355 LVSEKLSFFFEENPEMSSMLIRKAIKAAQAREAARKAREEARSGKKNRRRDVLLSGKLTP 414

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
                    EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A  + I  N++I  
Sbjct: 415 AQSKNPQRNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKIDDIMKNEEIRT 474

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++  +G    + +  +D+ Y+KV+IMTDAD DGAHI  LLLTFFY+ M  L+E   +++ 
Sbjct: 475 IIHTIGAGVGADFTLDDVNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVYIA 534

Query: 576 SPPLFRITQG---TKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
            PPL+++++G    + V YA DE+  +K +++  +       I R+KGLGEM A+QL ET
Sbjct: 535 LPPLYKVSKGSGAKEVVEYAWDEDGLKKAIKKVGR----GYTIQRYKGLGEMNATQLWET 590

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            MD   RTL+RV I+         +  ++ LMG K + R K+I+   +F
Sbjct: 591 TMDPETRTLIRVRIDD----AARAEKRVSTLMGDKVEPRRKWIESHVAF 635


>gi|256820281|ref|YP_003141560.1| DNA gyrase, B subunit [Capnocytophaga ochracea DSM 7271]
 gi|256581864|gb|ACU92999.1| DNA gyrase, B subunit [Capnocytophaga ochracea DSM 7271]
          Length = 658

 Score =  607 bits (1565), Expect = e-171,   Method: Composition-based stats.
 Identities = 259/668 (38%), Positives = 378/668 (56%), Gaps = 33/668 (4%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
             Q  S  Y A +I+ LEG+E VRMRP MYIG    + LHHL  EV+DN++DE +AGY +
Sbjct: 7   NEQQNSAEYSADNIQSLEGMEHVRMRPSMYIGDVGTRGLHHLVYEVLDNSIDEALAGYCD 66

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V+++ +  +TV DNGRGIPV+ H K    S L++++T + AGGKFD  +Y++SGGLH
Sbjct: 67  TISVTINEDNSITVEDNGRGIPVDVHKK-EGVSALQVVMTKIGAGGKFDKGSYKVSGGLH 125

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+S VNALSD L  TV R   I+ Q++ RG+ + P+++     +KRGT++TF PD  I
Sbjct: 126 GVGVSCVNALSDHLTATVYRDGKIWQQEYQRGVAMYPVKQVGNT-DKRGTKVTFHPDEVI 184

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     +    L    +  AYL+  +    +  +   EK      E+FY   GLK +++ 
Sbjct: 185 FEQTIEYKYDTLAARIRELAYLNKGITITLTDLRNKDEKG-NFITEKFYSQNGLKEFVKF 243

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGL 334
              NR  I   +     EK G     VE A+ + +   E    Y N I T EGGTH  G 
Sbjct: 244 LDGNRMPIIGNVIAMDGEKNGIP---VEVAMIYNDSYNENLHSYVNNINTSEGGTHLQGF 300

Query: 335 RVALTRGIKKYAELTQ--------NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           R+ LTR +K YA+ +          K  + I  DD       ++SV + EP+F GQTKTK
Sbjct: 301 RMGLTRTLKAYADKSGLLEKMSKDKKNPVEIEGDDFREGLTAVISVKVAEPQFEGQTKTK 360

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IR 445
           L + +    V  A+    + YL +NP +A  ++E VI  ++ R   RK RE+ ++ + + 
Sbjct: 361 LGNREVTSAVSQAVGQMLEDYLEENPNDAKTIVEKVILAAQARQAARKAREMVQRKSVMS 420

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS+      ELF+VEGDSAGG+AKQ RN+  QA+LPLRGKILNV  A   
Sbjct: 421 GGGLPGKLADCSEEDPEKCELFLVEGDSAGGTAKQGRNKDIQAILPLRGKILNVEKAMQH 480

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           K+ ++ +I ++  ALG    ++   +      LRY KVIIM DADVDG+HI +L+LTFF+
Sbjct: 481 KVFDSDEIKNIYTALGVTVGTEEDAKALNLSKLRYHKVIIMCDADVDGSHITTLILTFFF 540

Query: 561 QEMYDLIEQKHLFLISPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           + M +LIE  H+++ +PPL+ +      +  YA +++ +  +  E      G + I R+K
Sbjct: 541 RYMRELIENGHVYIATPPLYLVKSKNSKREEYAWNDKQRDALSAEM-----GNVNIQRYK 595

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           GLGEM   QL +T M+   RTL +V I+       +     + LMG +   R +FI++ A
Sbjct: 596 GLGEMNDHQLWDTTMNPEHRTLRQVTIDNAT----EADRVFSMLMGDEVPPRREFIEKNA 651

Query: 679 SFIDDVGT 686
            +   +  
Sbjct: 652 KYAK-IDA 658


>gi|219685160|ref|ZP_03539980.1| DNA gyrase, B subunit [Borrelia garinii Far04]
 gi|219673256|gb|EED30275.1| DNA gyrase, B subunit [Borrelia garinii Far04]
          Length = 634

 Score =  607 bits (1565), Expect = e-171,   Method: Composition-based stats.
 Identities = 247/647 (38%), Positives = 369/647 (57%), Gaps = 19/647 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY AS+I++L+GLE VR RPGMYIG      LHHL  EV+DN++DE +AG+ + I+V ++
Sbjct: 2   NYAASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLVYEVVDNSIDEALAGFCDKIDVVIN 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV+DNGRGIP + H +    S LE++LT LH+GGKF+  TY++SGGLHGVGISVV
Sbjct: 62  LDNTITVIDNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L V V R   IF Q FS+GIP S +E   +     GT++TF  D +IF     +
Sbjct: 121 NALSSFLEVYVNRDGKIFRQTFSKGIPTSKVEVVGESS-ITGTKVTFLADSEIFETL-DY 178

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L K  +  A+L+ ++       +   EK        FYF GG+K+++     +   
Sbjct: 179 NFDVLEKRLKELAFLNDKIYITIEDKRAGKEKSSK-----FYFEGGIKSFVDYLTNDSKA 233

Query: 283 ISSEIFTGKTE-KKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
             SE +              ++W  ++ +    I S+ N I T EGGTH  G R  LT+ 
Sbjct: 234 FQSESYYIDGFINDVIVNVGLKWTESYSDN---ILSFVNNINTREGGTHVMGFRSGLTKA 290

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + +  + ++   K   ++  DD       ++SV + EP+F GQTK+KL + + ++ VE  
Sbjct: 291 MNEAFKNSKISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIKKIVEII 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458
           + +     +  NP+E   +LE  I  +  R   RK R    +K A   L LPGKLADC+ 
Sbjct: 351 VYEHLLEIINSNPLEIDIILEKAIRAARAREAARKARESERKKNAFESLALPGKLADCAS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E++IVEGDSAGGSAK  RNR  QA+LPL GK+LNV     +K+  N +++ ++ 
Sbjct: 411 KNPSEREIYIVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           +LG      +    LRY KVIIM DADVDG+HI +LLL FF++ M DLIE  ++++  PP
Sbjct: 471 SLGAGVGKTFDITKLRYHKVIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYIYIAMPP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L++I    +  Y +DE+ K+K L+  +   +  I + R+KGLGEM  +QL ET MD  +R
Sbjct: 531 LYKIKYDNRIYYCYDEKEKEKFLDSIETKNRNNISLQRYKGLGEMNPTQLWETTMDPARR 590

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +  + I+  +    + +     LMG   + R +FI++ A  + ++ 
Sbjct: 591 KMRLINIDDAI----EAEKIFVTLMGDLVEPRKEFIEQNALNVINLD 633


>gi|114569878|ref|YP_756558.1| DNA topoisomerase IV subunit B [Maricaulis maris MCS10]
 gi|114340340|gb|ABI65620.1| DNA topoisomerase IV subunit B [Maricaulis maris MCS10]
          Length = 672

 Score =  607 bits (1565), Expect = e-171,   Method: Composition-based stats.
 Identities = 361/695 (51%), Positives = 488/695 (70%), Gaps = 34/695 (4%)

Query: 1   MTD--DSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPV 58
           M++     DLFS  P  +   +                       Y A+ I +LEGLE V
Sbjct: 1   MSNQNSDSDLFSGAPAPTPSKAPAPG-------------------YSAAHIEVLEGLEAV 41

Query: 59  RMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPV 118
           R RPGMYIGGTDE+A HHLF+E++DN+MDE +AG+A+ IEV++D + ++TV DNGRGIPV
Sbjct: 42  RRRPGMYIGGTDERAYHHLFAEILDNSMDEAVAGWADRIEVAVDEDSYITVTDNGRGIPV 101

Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178
           + HPK+P+KS LE++LT LHAGGKF +S Y+ SGGLHGVGISVVNALS+ L V VAR+ T
Sbjct: 102 DPHPKYPDKSALEVVLTILHAGGKFSDSAYKTSGGLHGVGISVVNALSEVLDVEVAREKT 161

Query: 179 IFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLS 238
           +++Q +SRG+P  PL K     N+RGT+I F PD +IFGDK     AR+  M +SKA+L 
Sbjct: 162 LWTQSYSRGLPQGPLVKVGPAPNRRGTKIRFLPDTQIFGDKMSVKPARIYAMARSKAFLR 221

Query: 239 GRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH 298
             VK  W C   + E   IP  +   FPGGL   +    E R+L+++E F+G+ E++   
Sbjct: 222 RGVKIQWRCAPSLVEGTDIPADDILCFPGGLADRMAELAEKRALVTAEGFSGRVERED-G 280

Query: 299 RGTVEWAIAWC------EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK 352
            G VEWAI W       + +    SYCNT+ T +GGTHE GLR AL++G++ YAE T  K
Sbjct: 281 AGGVEWAITWSGNGYGGDADGFCQSYCNTVPTPQGGTHEQGLRAALSKGLRAYAEHTHAK 340

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
           +A  I ++D++  A  ++SVFI +PEF GQTK +L + +A + VE A+RD FDH+L  +P
Sbjct: 341 KASQITAEDVLGGAGALVSVFIGDPEFQGQTKERLATPEATKLVETAVRDQFDHWLAGSP 400

Query: 413 IEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
            EA KL+E+ IER+++R+RRRK++ V R+TA R+LRLPGKLADCS+  A GTELF+VEGD
Sbjct: 401 KEAAKLVEFAIERADDRMRRRKEKNVKRQTASRRLRLPGKLADCSRADADGTELFLVEGD 460

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           SAGGSAKQAR+R  QA+LPLRGKILNVASA ++KI  NQ+I DL+ ALGC T S+++ ED
Sbjct: 461 SAGGSAKQARSRQTQAILPLRGKILNVASATADKISANQEISDLLLALGCLTGSKFKLED 520

Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAH 592
           LRYE+V+IMTDADVDGAHIA+LL+TFFY+ M +LI    LFL  PPL+R+TQG++++YA 
Sbjct: 521 LRYERVVIMTDADVDGAHIAALLITFFYRSMPELIHSGRLFLAQPPLYRLTQGSRTLYAR 580

Query: 593 DEEHKQKIL-EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651
           D+ H+++++ +EFK +   KIE+ RFKGLGEM  SQLK+T MD   RTL RV I++  N 
Sbjct: 581 DDAHREQLIRDEFKAN--SKIEVGRFKGLGEMTPSQLKQTTMDPAVRTLARVVIDE--ND 636

Query: 652 LKDTQDSINKLMGTKADERFKFIQERASFI-DDVG 685
           +   +  +  LMG K + RFKFIQ+ A+F+ +D+ 
Sbjct: 637 MPTLEALVETLMGKKPEARFKFIQDNATFVTEDLD 671


>gi|296268004|ref|YP_003650636.1| DNA gyrase subunit B [Thermobispora bispora DSM 43833]
 gi|296090791|gb|ADG86743.1| DNA gyrase, B subunit [Thermobispora bispora DSM 43833]
          Length = 647

 Score =  607 bits (1565), Expect = e-171,   Method: Composition-based stats.
 Identities = 251/656 (38%), Positives = 363/656 (55%), Gaps = 24/656 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +YDASSI +LEGLE VR RPGMYIG T E+ LHHL  E++DNA+DE +AG+ + I+V+L 
Sbjct: 2   SYDASSITVLEGLEAVRKRPGMYIGSTGERGLHHLVYEIVDNAVDEALAGHNDRIDVTLL 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G + V D GRGIPV   P    +  +E++ T LHAGGKFD  +Y +SGGLHGVG SVV
Sbjct: 62  ADGGVRVADRGRGIPVGIVP-SEGRPAVEVVFTVLHAGGKFDRKSYAVSGGLHGVGASVV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L V V     ++ Q + +  P  PL+K  +  +  GT +TF PD  IF     +
Sbjct: 121 NALSKRLEVEVRTDGHVWRQSYVQAKPTGPLQK-GEPTDDHGTTVTFWPDETIFET-TTW 178

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L +  Q  A+L+  +    + ++      G P+   +++ GGL  ++      +  
Sbjct: 179 NFETLSRRFQEMAFLNKGLTITLTDER-PEYINGEPKVVTYHYEGGLADFVTYLNSKKEP 237

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           I   +   +    G    +VE A+ W       + ++ NTI T EGGTHE G R ALT  
Sbjct: 238 IHGSVIYFEEHGDGI---SVEVAMQWNASYTESVYTFANTINTAEGGTHEEGFRAALTSV 294

Query: 342 IKKY---AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
           + +Y       +  +  ++  DD+      I+SV +  P+F GQTKTKL + +A+  V+ 
Sbjct: 295 VNRYAREQRYLKEGKDDNLTGDDVREGLAAIISVKLANPQFEGQTKTKLGNTEAKSFVQK 354

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLPGKLADC 456
           A  D    +  +NP EA +++   I+ S  R+  R+ R++ R+ ++      LPGKLADC
Sbjct: 355 ACNDHLRDWFERNPGEAKEIINKAIQASRARIAARQARDLTRRKSLLESGSGLPGKLADC 414

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
             +     ELFIVEGDSAGGSAK  R+   QA+LP+RGKILNV  A  +K+  N +I  L
Sbjct: 415 QWSDPEKCELFIVEGDSAGGSAKGGRDPRFQAILPIRGKILNVEKARIDKVLRNNEIQAL 474

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + ALG      +    LRY K+I+M DADVDG HI +LLLT  ++ M  LIE  H++L  
Sbjct: 475 ITALGTGVHDDFDISKLRYHKLILMADADVDGQHITTLLLTLLFRFMRPLIEAGHVYLAQ 534

Query: 577 PPLFRIT---QGTKSVYAHDEEHKQKILEEFKKHGKGKIE----ISRFKGLGEMLASQLK 629
           PPL++I    +G  + YA+ +  +  I+E     GK        + RFKGLGEM ASQL 
Sbjct: 535 PPLYKIKWDRKGEDASYAYSDRERDAIIEAGIAQGKRDPRLHDGVQRFKGLGEMNASQLW 594

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           ET M+   R L +V ++          +  + LMG   + R +FI   A  +  + 
Sbjct: 595 ETTMNPETRILRQVTLDD----AAQADELFSVLMGEDVEARRQFIIRNARDVRFLD 646


>gi|329938633|ref|ZP_08288029.1| DNA gyrase subunit B [Streptomyces griseoaurantiacus M045]
 gi|329302124|gb|EGG46016.1| DNA gyrase subunit B [Streptomyces griseoaurantiacus M045]
          Length = 691

 Score =  607 bits (1565), Expect = e-171,   Method: Composition-based stats.
 Identities = 263/703 (37%), Positives = 380/703 (54%), Gaps = 31/703 (4%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           M D         P ++  S++          S        S  YDAS+I +LEGL+ VR 
Sbjct: 1   MADSGN------PNENIPSTDAGAHDPGPTSSSGSPAGEGSPAYDASAITVLEGLDAVRK 54

Query: 61  RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           RPGMYIG T E+ LHHL  EV+DN++DE +AG+A+ I+V++  +G + VVDNGRGIPV  
Sbjct: 55  RPGMYIGSTGERGLHHLVYEVVDNSVDEALAGHADTIDVTILADGGVRVVDNGRGIPVGI 114

Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
            P    K  +E++LT LHAGGKF    Y +SGGLHGVG+SVVNALS ++ V V      +
Sbjct: 115 VP-SEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVSVVNALSTKVAVEVRTDGYRW 173

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
           +Q +  G+P +PL K E      GT +TF  D  IF     +    L +  Q  A+L+  
Sbjct: 174 TQDYKLGVPTAPLVKNEATEE-TGTSVTFWADGDIFET-TEYSFETLSRRFQEMAFLNKG 231

Query: 241 VKTCWSCDKEI-----------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFT 289
           +    + ++E            A++    +   +++ GG+  +++     +  I      
Sbjct: 232 LTIRLTDERESAKATSGADEAGADEKEEVKSVTYHYEGGIVDFVKYLNARKGEIVHPSVI 291

Query: 290 GKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
               +      ++E A+ W     E + S+ NTI T EGGTHE G R ALT  I +YA  
Sbjct: 292 DIEAEDKDRMLSLEVAMQWNNGYSEGVYSFANTIHTHEGGTHEEGFRAALTGLINRYARD 351

Query: 349 TQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
            +   ++  ++  DD+      I+SV + EP+F GQTKTKL + +A+  V+  + +    
Sbjct: 352 KKLLREKDDNLTGDDIREGLTAIISVKLGEPQFEGQTKTKLGNTEAKTFVQKVVHEHLTD 411

Query: 407 YLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTE 465
           +L +NP EA  ++   I+ +  R+  RK R++ R+   +    LPGKL+DC  N     E
Sbjct: 412 WLDRNPNEAADIIRKSIQAATARVAARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCE 471

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
           +FIVEGDSAGGSAK  RN   QA+LP+RGKILNV  A  +KI  NQ+I  L+ A G    
Sbjct: 472 IFIVEGDSAGGSAKSGRNPEYQAILPIRGKILNVEKARIDKILQNQEIQALISAFGTGVH 531

Query: 526 SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG 585
             +  E LRY K+I+M DADVDG HI +LLLTF ++ M  L+E  H+FL  PPLF+I  G
Sbjct: 532 EDFDIEKLRYHKIILMADADVDGQHINTLLLTFLFRFMRPLVEAGHVFLSRPPLFKIKWG 591

Query: 586 TKSV-YAHDEEHKQKILEEFKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLR 642
                YA+ +  +  ++E  + +GK      I RFKGLGEM A +L+ T MD + R L +
Sbjct: 592 RDDFEYAYSDRERDALIELGRNNGKRVRDDSIQRFKGLGEMNAEELRITTMDVDHRVLGQ 651

Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           V ++          D  + LMG   + R  FIQ  A  +  + 
Sbjct: 652 VTLDD----AAQADDLFSVLMGEDVEARRAFIQRNAKDVRFLD 690


>gi|300172307|ref|YP_003771472.1| DNA gyrase subunit B [Leuconostoc gasicomitatum LMG 18811]
 gi|299886685|emb|CBL90653.1| DNA gyrase, B subunit [Leuconostoc gasicomitatum LMG 18811]
          Length = 669

 Score =  607 bits (1565), Expect = e-171,   Method: Composition-based stats.
 Identities = 255/659 (38%), Positives = 377/659 (57%), Gaps = 22/659 (3%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A    +++ +Y+A  I++LEGLE VR RPGMYIG T  + LHHL  E++DN +DE +AG+
Sbjct: 25  ASTVNASAGDYNADQIQVLEGLEAVRKRPGMYIGTTTAQGLHHLVWEIVDNGIDEALAGF 84

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ I V+++ +  +TV D+GRGIPV+   K   KS LE + T LHAGGKF    Y++SGG
Sbjct: 85  ASHITVTIEKDNSITVTDDGRGIPVDIQTK-TGKSALETVFTVLHAGGKFGGGGYKVSGG 143

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPD 212
           LHGVG SVVNALS  L V V R N ++   F  G +  S ++  EK    RGT + F PD
Sbjct: 144 LHGVGASVVNALSTNLDVRVIRDNQVYYMDFKLGRVNTSIVKLDEKPTIDRGTIVHFNPD 203

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
             IF +   F+   LL   +  A+L+  ++   + ++        P  E F+F GG+K Y
Sbjct: 204 SDIFRETTTFNYNTLLTRVRELAFLNKGLRISITDNRLEV-----PATESFHFEGGIKEY 258

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHE 331
           +      +++I  E    + E+ G     VE A+ +  +    + ++ N I T EGGTHE
Sbjct: 259 VGYLNSEKTVIFPEPVYVEGEENGI---VVEAALQYTTDIKDSLRTFANNINTYEGGTHE 315

Query: 332 SGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G + ALTR I  Y       +    S+  +D+      I+S+   +P+F GQTKTKL +
Sbjct: 316 TGFKTALTRVINDYGRKNGQLKDNAESLTGEDVREGVTAIVSIKHPDPQFEGQTKTKLGN 375

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLR 448
            DA++  +    + F  ++++NPI A ++++  I   + RL  ++ RE+  +++ +    
Sbjct: 376 SDARQATDRMFSETFSRFMMENPIVAKQIVDKGILAQKARLAAKRAREMTRKQSGLEIGN 435

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLAD + N    +ELFIVEGDSAGGSAKQ RNR  QA+LP+RGKILNV  A  +++ 
Sbjct: 436 LPGKLADNTSNDPAISELFIVEGDSAGGSAKQGRNRVTQAILPIRGKILNVEKATLDRVL 495

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            N++I  L  A+G      +  E   Y KVIIMTDADVDGAHI +LLLT FY+ M  L++
Sbjct: 496 GNEEIRSLFTAMGTGFGDDFNVEKANYHKVIIMTDADVDGAHIRTLLLTLFYRYMRPLVD 555

Query: 569 QKHLFLISPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
             ++++  PPL+ +  G      Y   +E  +  L +   + K K  + R+KGLGEM   
Sbjct: 556 AGYIYIAQPPLYGVALGNSKTREYLDTDEELEAYLTQLPSNIKPK--VQRYKGLGEMDFD 613

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           QL +T MD   R LLRV    D +  +      + LMG     R +FI+E A F++++ 
Sbjct: 614 QLADTTMDPINRRLLRV----DPSDAEAADSIFDMLMGDDVAPRREFIEENAVFVENLD 668


>gi|325843401|ref|ZP_08167959.1| DNA topoisomerase IV, B subunit [Turicibacter sp. HGF1]
 gi|325489323|gb|EGC91697.1| DNA topoisomerase IV, B subunit [Turicibacter sp. HGF1]
          Length = 644

 Score =  607 bits (1565), Expect = e-171,   Method: Composition-based stats.
 Identities = 243/658 (36%), Positives = 364/658 (55%), Gaps = 38/658 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY+  SI++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DEV+AGY + I+V++ 
Sbjct: 6   NYNEDSIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAIDEVLAGYGDHIKVTIH 65

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            N  ++V D+GRG+P   H     K T E+I T LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 66  ENNSISVQDSGRGVPTGMHK--SGKPTPEVIFTVLHAGGKFGTGGYKTSGGLHGVGASVV 123

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS+ + VT+ R   ++ Q+F  G  P++ L+   K +   GT ++F+PDP+IF     
Sbjct: 124 NALSEWVEVTIKRDGNVYRQRFENGGHPVTGLDIIGKSKE-TGTLVSFKPDPEIFSTTV- 181

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +    L +  +  A+L   +K      +   E       E FY+  G+K+++    E + 
Sbjct: 182 YSFDILSERLRESAFLLKGLKIELIDLRNDKE-------ETFYYEDGIKSFVSYLNEGKD 234

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            +  ++   + E   +    V++A  +       I S+ N + T +GGTHE+G +  LTR
Sbjct: 235 TLH-DVVYFEGE---SQEIEVDFAFQYSGSYSENILSFVNNVRTKDGGTHETGAKAVLTR 290

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
               YA       ++  ++   D+      I+SV I E   +F GQTK KL + +A+  V
Sbjct: 291 IFNDYARRNGLLKEKEKNLEGADIREGLAAIVSVRIPENLLQFEGQTKAKLGTPEARSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKL 453
           +N + +    +  +N   AT+L++  I+ ++ R   RK RE  R    +K     L GKL
Sbjct: 351 DNVIAEKLTFFFEENGAVATQLIKKAIKAAQVREAARKAREDARSGKTKKKKETNLSGKL 410

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      ELF+VEGDSAGGSAK  RNR+ QA+LPLRGK++N   A  E I  N++I
Sbjct: 411 TPAQTKNPQKNELFLVEGDSAGGSAKLGRNRAFQAILPLRGKVINTEKAKMEDIFKNEEI 470

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++  +G    + +   D+ Y+KVIIMTDAD DGAHI  LLLTFF++ M +L+E   ++
Sbjct: 471 NTMIYTIGAGVGANFELSDVNYDKVIIMTDADTDGAHIQVLLLTFFFRYMRELVEAGKVY 530

Query: 574 LISPPLFRITQG--TK--SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G   K    YA  +E    ++ +  K       + R+KGLGEM A QL 
Sbjct: 531 IALPPLYKVSKGQGKKQVVEYAWTDEELGSVIAKVGK----GYTLQRYKGLGEMNADQLW 586

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF--IDDVG 685
           +T M+   RTL++V I        D    +  LMG K + R ++I++   F   DD  
Sbjct: 587 DTTMNPETRTLIQVSIED----AADADHRVTTLMGDKVEPRREWIEQNVDFTMEDDYD 640


>gi|315223358|ref|ZP_07865217.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Capnocytophaga
           ochracea F0287]
 gi|314946689|gb|EFS98678.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Capnocytophaga
           ochracea F0287]
          Length = 658

 Score =  607 bits (1565), Expect = e-171,   Method: Composition-based stats.
 Identities = 258/668 (38%), Positives = 375/668 (56%), Gaps = 33/668 (4%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
             Q  S  Y A +I+ LEG+E VRMRP MYIG    + LHHL  EV+DN++DE +AGY +
Sbjct: 7   NEQQNSAEYSADNIQSLEGMEHVRMRPSMYIGDVSTRGLHHLVYEVLDNSIDEALAGYCD 66

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V+++ +  +TV DNGRGIPV+ H K    S L++++T + AGGKFD  +Y++SGGLH
Sbjct: 67  TISVTINEDNSITVEDNGRGIPVDVHKK-EGVSALQVVMTKIGAGGKFDKGSYKVSGGLH 125

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+S VNALSD L  TV R   I+ Q++ RG+ + P+++     +KRGT++TF PD  I
Sbjct: 126 GVGVSCVNALSDHLTATVYRDGKIWQQEYQRGVAMYPVKQVGDT-DKRGTKVTFHPDEVI 184

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     +    L    +  AYL+  +    +  +   EK      E+FY   GLK +++ 
Sbjct: 185 FEQTIEYKYDTLAARIRELAYLNKGITITLTDLRNKDEKG-NFITEKFYSQNGLKEFVKF 243

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGL 334
              NR  I   +     EK G     VE A+ + +   E    Y N I T EGGTH  G 
Sbjct: 244 LDGNRMPIIGNVIAMDGEKNGIP---VEVAMIYNDSYNENLHSYVNNINTSEGGTHLQGF 300

Query: 335 RVALTRGIKKY--------AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           R+ LTR +K Y              K  + I  DD       ++SV + EP+F GQTKTK
Sbjct: 301 RMGLTRTLKAYADKSGLLEKMNKDKKNPVEIEGDDFREGLTAVISVKVAEPQFEGQTKTK 360

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IR 445
           L + +    V  A+    + YL +NP +A  ++E VI  ++ R   RK RE+ ++ + + 
Sbjct: 361 LGNREVTSAVSQAVGQMLEDYLEENPNDAKTIVEKVILAAQARQAARKAREMVQRKSVMS 420

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS+      ELF+VEGDSAGG+AKQ RN+  QA+LPLRGKILNV  A   
Sbjct: 421 GGGLPGKLADCSEEDPAKCELFLVEGDSAGGTAKQGRNKDIQAILPLRGKILNVEKAMQH 480

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           K+ ++ +I ++  ALG    ++   +      LRY KVIIM DADVDG+HI +L+LTFF+
Sbjct: 481 KVFDSDEIKNIYTALGVTVGTEEDAKALNLSKLRYHKVIIMCDADVDGSHITTLILTFFF 540

Query: 561 QEMYDLIEQKHLFLISPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           + M +LIE  H+++ +PPL+ +      +  YA +++ +  +  E      G + I R+K
Sbjct: 541 RYMRELIENGHVYIATPPLYLVKSKNSKREEYAWNDKQRDALSAEM-----GNVNIQRYK 595

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           GLGEM   QL +T M+   RTL +V I+       +     + LMG +   R +FI++ A
Sbjct: 596 GLGEMNDHQLWDTTMNPEHRTLRQVTIDNAT----EADRVFSMLMGDEVPPRREFIEKNA 651

Query: 679 SFIDDVGT 686
            +   +  
Sbjct: 652 KYAK-IDA 658


>gi|331270701|ref|YP_004397193.1| DNA gyrase subunit B [Clostridium botulinum BKT015925]
 gi|329127251|gb|AEB77196.1| DNA gyrase, B subunit [Clostridium botulinum BKT015925]
          Length = 635

 Score =  607 bits (1565), Expect = e-171,   Method: Composition-based stats.
 Identities = 253/646 (39%), Positives = 376/646 (58%), Gaps = 22/646 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YD S I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AG+   I+V +  
Sbjct: 7   YDESQIQVLEGLEAVRKRPGMYIGSTGIRGLHHLVYEIVDNSIDEALAGFCQNIKVYIHK 66

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           N  +TV D+GRG+PV  HPK   + T+E+I+T LHAGGKF    Y++SGGLHGVG SVVN
Sbjct: 67  NNSVTVKDDGRGMPVGIHPKM-KRPTVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVN 125

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS    V V R+  ++ Q++ +G   S LE        RGT + F PD +IF +   FD
Sbjct: 126 ALSKYCKVEVRREGHVWMQEYKKGKVASELEVIGDSEE-RGTLVYFEPDDEIFEEV-EFD 183

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L    +  A+L+   +     ++E  E       +EF++ GG+K+++     N+  +
Sbjct: 184 YDTLSHRLRELAFLNKGTRIILVDEREEKE-------QEFHYEGGIKSFVSYLNRNKQTL 236

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
             E    +  K       VE A+ + +     I ++ N I T EGGTH +G + ALTR +
Sbjct: 237 HEEPIYVEGNKDD---YLVEVALQYNDTYNDNIFAFANNIDTIEGGTHLAGFKSALTRVL 293

Query: 343 KKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             YA      +    ++  DD       ++SV + +P+F GQTKTKL + + +  V++ +
Sbjct: 294 NDYARRYGYLKETDKNLSGDDTREGLTAVISVKLTDPQFEGQTKTKLGNSEVRGIVDSIV 353

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQN 459
            +    +L +NP  A  ++E  +  +  R   +K RE   RK+ +    LPGKLADCS  
Sbjct: 354 SERVSEFLEENPDTAKTVIEKSLTAARAREAAKKARELTRRKSVLESTALPGKLADCSSK 413

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
                E++IVEGDSAGGSAKQ R+R  QA+LPLRGKI+NV     +KI N++QI  ++ A
Sbjct: 414 DPSECEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKIMNVEKQRLDKILNSEQIRAMITA 473

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
            G      +  E +RY ++IIMTDADVDGAHIA+LLLTFFY+ M +L+E  H+++  PPL
Sbjct: 474 FGAGIGKDFDIEKIRYHRIIIMTDADVDGAHIATLLLTFFYRYMRELVEGGHVYIAQPPL 533

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           +++ +G    Y++ +   +++L E     K   EI R+KGLGEM A+QL +T M+   RT
Sbjct: 534 YQVKRGKVIRYSYSDNELKQVLTELGGKDKNT-EIQRYKGLGEMDATQLWDTTMNPEHRT 592

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           L++V I+  +       +    LMG K + R +FI+E A  + ++ 
Sbjct: 593 LVKVTIDDAMR----ADEVFTILMGDKVEPRREFIEENAKKVVNLD 634


>gi|297158796|gb|ADI08508.1| DNA gyrase subunit B [Streptomyces bingchenggensis BCW-1]
          Length = 680

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 257/651 (39%), Positives = 375/651 (57%), Gaps = 15/651 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +YDAS+I +LEGL+ VR RPGMYIG T E+ LHHL  EV+DN++DE +AG+A+ IEV++ 
Sbjct: 36  SYDASAITVLEGLDAVRKRPGMYIGSTGERGLHHLVQEVVDNSVDEALAGHADTIEVTIL 95

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G + VVDNGRGIPV+ HP    K  +E++LT LHAGGKF    Y +SGGLHGVG+SVV
Sbjct: 96  PDGGVRVVDNGRGIPVDLHP-VEKKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVSVV 154

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS ++ V V R    ++Q +  G+P +PL K E+V    GT +TF  DP +F     +
Sbjct: 155 NALSTKVSVEVKRDGYRWTQDYKLGVPTAPLAKNEQVTE-TGTTVTFWADPDVFET-TEY 212

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
               L +  Q  A+L+  +    + ++    ++ G P    + + GG+  ++Q     + 
Sbjct: 213 SFETLSRRFQEMAFLNKGLSISLTDERAAHVDEEGKPLSVTYCYEGGIVDFVQYLNSRKG 272

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            +      G   +      +VE A+ W  +    + S+ NTI T EGGTHE G R ALT 
Sbjct: 273 ELVHPTIIGFEAEDKERMLSVEIAMQWNTQYTEGVYSFANTIHTHEGGTHEEGFRAALTY 332

Query: 341 GIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I KYA   +   ++  ++  +D+      I+SV + EP+F GQTKTKL + +A+  V+ 
Sbjct: 333 LINKYARDKKLLREKDDNLTGEDIREGLTAIISVKLGEPQFEGQTKTKLGNTEAKTFVQK 392

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCS 457
            + +    +L +NP EA  ++   I+ +  R+  RK R++ R+   +    LPGKLADC 
Sbjct: 393 IVHEHLADWLDRNPNEAADIIRKSIQAATARVAARKARDLTRRKGLLETASLPGKLADCQ 452

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
            N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV  A  +KI  N ++  L+
Sbjct: 453 SNDPAKCEIFIVEGDSAGGSAKAGRNPQYQAILPIRGKILNVEKARVDKILQNNEVQALI 512

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A G      +    LRY K+I+M DADVDG HI +LLLTF ++ M  L+E  H+FL  P
Sbjct: 513 SAFGTGVHEDFDISKLRYHKIILMADADVDGQHINTLLLTFLFRFMRPLVEAGHVFLSRP 572

Query: 578 PLFRITQGTKSV-YAHDEEHKQKILEEFKKHGK--GKIEISRFKGLGEMLASQLKETAMD 634
           PL++I  G     YA+ +  +  +++  ++ GK   +  + RFKGLGEM A +L+ T MD
Sbjct: 573 PLYKIKWGRDDFEYAYSDRERDALIQAGREQGKRIKEDSVQRFKGLGEMNAEELRVTTMD 632

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            + R L +V ++          D  + LMG   + R  FIQ  A  +  + 
Sbjct: 633 VDHRVLGQVTLDD----AAQADDLFSVLMGEDVEARRSFIQRNAKDVRFLD 679


>gi|307278016|ref|ZP_07559100.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0860]
 gi|306505413|gb|EFM74599.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0860]
          Length = 685

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 242/657 (36%), Positives = 358/657 (54%), Gaps = 33/657 (5%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +  ++ Y+ +SI++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DE ++GY N 
Sbjct: 2   AKKINNEYNDASIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGNE 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V++  +  + V D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHG
Sbjct: 62  INVTIQKDNSICVADSGRGMPTGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHG 119

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           VG SVVNALS  L V + R    + ++F  G  P+  L+K  K + + GT +TF PD  I
Sbjct: 120 VGASVVNALSKWLEVHIVRDGVEYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDDTI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     F    L +  +  A+L   VK   +  +    K      E F++  G+K ++  
Sbjct: 180 FSTTN-FSYEILAERLRESAFLLKGVKITLTDGRGEELKE-----EVFHYEEGIKEFVAY 233

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
             E +  ++  +      K+G     VE A  + +   E   S+ N + T +GGTHE G+
Sbjct: 234 LNEEKDTLTPVV-YFSGAKEGI---EVELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGM 289

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390
           + ++T+   +YA       ++  ++   D       +LS+ + E   +F GQTK KL + 
Sbjct: 290 KTSMTKAYNEYARKVGLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTP 349

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---L 447
            A+  V+N + +    YL +N   +  L+   I+  E R   RK RE +R    RK    
Sbjct: 350 LARTVVDNVVGEQMGFYLQENSEMSQSLIRKAIKAREAREAARKAREESRNGKKRKKGES 409

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            L GKL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I
Sbjct: 410 LLSGKLTPAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDI 469

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N++I  ++  +G     ++  ED  Y+K+IIMTDAD DGAHI  LLLTFFY+ M  LI
Sbjct: 470 LKNEEINTMIYTIGAGVGPEFSIEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLI 529

Query: 568 EQKHLFLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
           E   +++  PPL+++++G   KSV  YA  +    +++++  K       + R+KGLGEM
Sbjct: 530 EAGKVYIALPPLYKVSKGTGKKSVIEYAWTDGELAEVIDKVGK----GYMLQRYKGLGEM 585

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            A QL ET MD   RTL+RV I+         +  +  LMG K + R K+I++   F
Sbjct: 586 NAEQLWETTMDPETRTLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIEQHVQF 638


>gi|298291347|ref|YP_003693286.1| DNA topoisomerase IV subunit beta [Starkeya novella DSM 506]
 gi|296927858|gb|ADH88667.1| DNA topoisomerase IV, B subunit [Starkeya novella DSM 506]
          Length = 680

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 405/689 (58%), Positives = 510/689 (74%), Gaps = 14/689 (2%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           M+ ++ DLFS  PP  + +    K +      P      A + Y A+ I +LEGLEPVR 
Sbjct: 1   MS-NADDLFSAAPPAPRPARPTAKAAARGEAPPP-----AENGYTAAHIEVLEGLEPVRR 54

Query: 61  RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           RPGMYIGGTDEKALHHLF+EVIDN MDE +AG+A+ I+V L  +GFL V DNGRGIP+E+
Sbjct: 55  RPGMYIGGTDEKALHHLFAEVIDNCMDEAVAGHASFIDVELTEDGFLAVTDNGRGIPIED 114

Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
           HPK+P KS LE+ILTTLHAGGKFD+  YE SGGLHGVG+SVVNALSD L V VAR   ++
Sbjct: 115 HPKYPGKSALEVILTTLHAGGKFDSKVYETSGGLHGVGVSVVNALSDVLEVEVARGQMLY 174

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
            Q +SRG+P  P+++  +V N+RGTR+ F PD +IFG+ A F  AR+ KM +SKAYL G 
Sbjct: 175 RQTYSRGLPQGPIQEVGRVLNRRGTRVRFHPDAQIFGEGARFKPARVFKMARSKAYLFGG 234

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
           V+  WSCD  +     IPEK  F FPGGLK YL   +E  +L+  ++F GKT + G H G
Sbjct: 235 VEIRWSCDASLVAGSEIPEKAVFRFPGGLKDYLAADIEGHTLVHPDVFAGKTSRPGGH-G 293

Query: 301 TVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISII 358
           + EWA+AW  + +  I+SYCNTI T EGGTHE+GLR  L +G++ +AE T N KRA  I 
Sbjct: 294 SAEWAVAWLGDADGAISSYCNTIPTAEGGTHEAGLRSVLLKGLRDHAERTGNTKRASIIT 353

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
           +DD+M     +LSVF+REPEF GQTK KL + +A R VE ALRDPFDH+L  NP +A++L
Sbjct: 354 TDDVMAGCAAMLSVFVREPEFQGQTKEKLATAEATRIVEAALRDPFDHWLGGNPTQASRL 413

Query: 419 LEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
           L+WVIER++ERLRRR+++E++RKTA+RKLRLPGKLADCS N A G+ELFIVEGDSAGGSA
Sbjct: 414 LDWVIERADERLRRRQEKEISRKTAVRKLRLPGKLADCSNNSAAGSELFIVEGDSAGGSA 473

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538
           KQAR R  QAVLPLRGKILNVASAG +K+  NQQ+ DL+QALGC T + YREEDLRYE+V
Sbjct: 474 KQARERQTQAVLPLRGKILNVASAGRDKLAQNQQLADLMQALGCGTGTHYREEDLRYERV 533

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQ 598
           IIMTDADVDGAHIASLL+TFF+++M  LIE  HLFL  PPL+RI+QG K++YA DE H+ 
Sbjct: 534 IIMTDADVDGAHIASLLVTFFFRQMPKLIENGHLFLAVPPLYRISQGAKTLYARDEAHRD 593

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           ++L++ +  G+GK+EI RFKGLGEM+ +QLKET M    RTLLRV I +   +   T D 
Sbjct: 594 ELLKK-EFSGRGKVEIGRFKGLGEMMPAQLKETTMSRKTRTLLRVSIEEAERAA--TADI 650

Query: 659 INKLMGTKADERFKFIQERASFIDD--VG 685
           + +LMG K + RF FI ERA+F  +  + 
Sbjct: 651 VERLMGNKPESRFAFISERAAFASEELLD 679


>gi|55377342|ref|YP_135192.1| DNA gyrase subunit B [Haloarcula marismortui ATCC 43049]
 gi|55230067|gb|AAV45486.1| DNA gyrase subunit B [Haloarcula marismortui ATCC 43049]
          Length = 642

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 252/652 (38%), Positives = 367/652 (56%), Gaps = 22/652 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           SD Y A SI+ LEGLE V+ RP MYIG TD + LHHL  EV+DNA+DE +AGY + I+V+
Sbjct: 5   SDEYGAKSIQTLEGLEAVQKRPAMYIGSTDARGLHHLVYEVVDNAIDEALAGYCDNIDVT 64

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +G ++V D+GRGIPV+ H +   +  +E+++T LHAGGKFDN +Y++SGGLHGVG+S
Sbjct: 65  IHDDGSVSVSDDGRGIPVDTHEEH-GRPAVEVVMTILHAGGKFDNKSYQVSGGLHGVGVS 123

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDPKIFGD 218
           VVNALS  L V V R   ++ Q+F  G P   L+K    K   + GT + F PD +IF  
Sbjct: 124 VVNALSKWLEVEVRRDGALWKQRFDHGKPEYDLKKVRDLKPDEETGTTVRFWPDDEIFET 183

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F  + L    +  A+L+  V      +++        E E F + GG++ +++   E
Sbjct: 184 -GEFKFSTLSSRLRELAFLNSGVAISIDDERD-------GETETFAYDGGIREFVEYLNE 235

Query: 279 NRSLISSEIFTGKTEKKG-THRGTVEWAIA-WCEENPEITSYCNTILTDEGGTHESGLRV 336
            +  +  +I   + E++       VE A+    +    I ++ N I T EGGTH +G + 
Sbjct: 236 TKDPLHRDIIYFEDEEEIAEGPVQVEIAMQGTDDLQGSIHAFANNINTREGGTHLTGFKT 295

Query: 337 ALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           +LTR I  YA      + +      DD+      ++SV   +P+F GQTKTKL + + + 
Sbjct: 296 SLTRVINDYATDNNLLKDLDDTLKGDDIREGLTAVISVKHPDPQFEGQTKTKLGNSEVRG 355

Query: 395 TVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
            VE+A+ D    +  +NP  A  ++ + V      +  ++ +    RK+A+    LPGKL
Sbjct: 356 IVESAMHDGLATFFEENPDTAEAIVGKAVEAAKARKAAQKAEELTRRKSALDSTALPGKL 415

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC        ELFI EGDSAGGSAKQ RN   QA+LP++GKILNV     ++I  N +I
Sbjct: 416 ADCQTRDPEEAELFIAEGDSAGGSAKQGRNPDFQAILPIKGKILNVEKHRLDRILENNEI 475

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            +L+ ALG     ++  EDLRYEK+I+MTDADVDGAHI +LLLT FY+ M  L+E  +++
Sbjct: 476 RNLITALGTGIGDEFDIEDLRYEKIILMTDADVDGAHIRTLLLTLFYRHMKPLLEAGYVY 535

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
              PPL+RI     +  A  +  + +I+EE  K       + RFKGLGEM   QL ET M
Sbjct: 536 ASQPPLYRIRYRGNTYDAMTDAERDQIIEE--KCDGNPTHVQRFKGLGEMNPEQLWETTM 593

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           + + R L ++ I              N LMG   + R +FI+E +   + V 
Sbjct: 594 NPDNRILKQITIED----AAAADKMFNILMGDAVEPRKEFIKEHSPEAEWVD 641


>gi|227508132|ref|ZP_03938181.1| DNA gyrase, B subunit [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227523343|ref|ZP_03953392.1| DNA gyrase, B subunit [Lactobacillus hilgardii ATCC 8290]
 gi|227089449|gb|EEI24761.1| DNA gyrase, B subunit [Lactobacillus hilgardii ATCC 8290]
 gi|227192361|gb|EEI72428.1| DNA gyrase, B subunit [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 647

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 252/657 (38%), Positives = 375/657 (57%), Gaps = 20/657 (3%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
               +  ++ YDAS I++LEGLE VR RPGMYIG T  + LHHL  E++DN +DE +AG+
Sbjct: 5   KETKKELANEYDASQIQVLEGLEAVRKRPGMYIGTTSSQGLHHLVWEIVDNGIDEALAGF 64

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A  I V+++ +  +TV D+GRGIPV+   K   K  LE + T LHAGGKF    Y++SGG
Sbjct: 65  ATKITVTVEKDNSITVTDDGRGIPVDIQKK-TGKPALETVYTILHAGGKFGGGGYKVSGG 123

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPD 212
           LHGVG SVVNALS+EL V V R   ++   FSRG   +P++  + V +   GT++ F PD
Sbjct: 124 LHGVGASVVNALSEELDVAVTRNGKVYYMDFSRGHVTTPMKVIDHVSDDLHGTKVHFLPD 183

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P IF +   FD   L    +  A+L+  ++      +        P +++F + GG++ Y
Sbjct: 184 PDIFRETTTFDIKVLTARLRELAFLNKGLRIIVRDMR-----PEKPTEQDFLYEGGIRHY 238

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHE 331
           ++   +++  +  E    +    G    TVE AI + E+      ++ N I T EGGTHE
Sbjct: 239 VEYLDKDKETLLKEPIYVEGMDNGI---TVEVAIDYSEDYHSTLMTFTNNIHTYEGGTHE 295

Query: 332 SGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G + ALTR I  YA      +    ++  +D+      ++S+   +P+F GQTKTKL +
Sbjct: 296 EGFKRALTRVINDYARKNNLLKDNEANLSGEDVREGTTAVVSIKHPDPQFEGQTKTKLGN 355

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448
            DA+   +    D F  +L++NP  A K+++  +  S+ R   ++ RE   RK+ +    
Sbjct: 356 SDARTVTDRIFSDHFSKFLMENPKLARKIIDRGLLASKARSAAKRAREVTRRKSGLEISS 415

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLAD +      +ELFIVEGDSAGGSAKQ R R  QA+LP+RGKILNV  A  ++I 
Sbjct: 416 LPGKLADNTSKDPKISELFIVEGDSAGGSAKQGRARLTQAILPIRGKILNVEKASMDRIL 475

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            N++I  L  A+G      +    + Y K+IIMTDADVDGAHI +LLLT  Y+ M  LI+
Sbjct: 476 ANEEIRSLFTAMGTGFGDDFDLSKINYHKLIIMTDADVDGAHIQTLLLTLIYRYMRPLID 535

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             ++++  PPL+++ QG    Y   ++   + L   +     K  I R+KGLGEM A QL
Sbjct: 536 AGYVYVAQPPLYQVRQGKMQRYIDSDDDLNQFLGTLQPS--PKPVIQRYKGLGEMDAEQL 593

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +T M+   R LLRV    + +   +     + LMG K + R +FI++ A+F++++ 
Sbjct: 594 WDTTMNPENRHLLRV----ESSDAAEANHVFSMLMGDKVEPRREFIEDNATFVENLD 646


>gi|270307455|ref|YP_003329513.1| DNA gyrase, B subunit [Dehalococcoides sp. VS]
 gi|270153347|gb|ACZ61185.1| DNA gyrase, B subunit [Dehalococcoides sp. VS]
          Length = 642

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 257/659 (38%), Positives = 383/659 (58%), Gaps = 24/659 (3%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
           D       + S+NY AS I++LEGL  VR RPGMYIG TD++ LHHL  E++ N++DE +
Sbjct: 3   DVNKAKPGANSENYTASDIQVLEGLAAVRKRPGMYIGSTDQRGLHHLVYEIVYNSVDEAM 62

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AG  + I+V +  +G ++V DNGRGIPV+ HP     S LE ++T LHAG KF   TY++
Sbjct: 63  AGVCDRIKVIMFKDGSVSVEDNGRGIPVDIHP-VTKISALETVMTVLHAGAKFGGKTYQV 121

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG SVVNAL++   V V R   I+ Q + RG P +PLE+   V +  GT   F+
Sbjct: 122 SGGLHGVGASVVNALAEWTTVKVRRNGKIYQQSYQRGKPSTPLEEIG-VSDGSGTTTIFK 180

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
            D +IF     +D   L    +  AYL+  ++     ++   E+        +YF GG+ 
Sbjct: 181 ADSQIFSTT-EYDFEILTDRLREIAYLNKGLEVYIYDEQSDQERT-------YYFEGGIT 232

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGT 329
            +++    NR +   +      +   T    +E AI + +   +   ++ N + T +GGT
Sbjct: 233 GFVRHLNRNREVRHRQPIYITKKSDSTI---LEVAIQYNDGYSDSTLTFANCVNTIDGGT 289

Query: 330 HESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R ALTR    YA  ++  +    +++ DD+    V I+SV + EP+F GQTK KL
Sbjct: 290 HLTGFRSALTRAFNDYAHKSKFLKDTDPNLMGDDVREGIVAIVSVKLPEPQFEGQTKGKL 349

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
            +++ +  VE+A+ +    YL ++P +  ++LE  I  ++ R   RK R+ + RK+A+  
Sbjct: 350 GNIEIKSFVESAVAEQLSLYLEEHPDDTKRILEKCITAAKAREAARKARDLIIRKSALDT 409

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADCS+  A   ELF+VEGDSAGGSAKQ RNR  QA+LPLRGKILNV  A  +K
Sbjct: 410 GTLPGKLADCSERDASLCELFLVEGDSAGGSAKQGRNRRFQAILPLRGKILNVEKASPDK 469

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           +  +++I  ++ AL     + +    LRY ++++MTDADVDG+HI +LLLTFF++ M  L
Sbjct: 470 MLAHEEIRAIITALAAGIDNDFDPAKLRYNRLVLMTDADVDGSHIRTLLLTFFFRHMPRL 529

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           I + HLF+  PPL++I  G+   + +++  K+ +L + K     K++I R+KGLGEM A 
Sbjct: 530 ITESHLFIAQPPLYKIKIGSTEHWVYNDAEKETLLSQTKST---KVDIQRYKGLGEMSAE 586

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           QL  T MD   RTLL V++              N LMG +   R  FIQ  +  + ++ 
Sbjct: 587 QLWRTTMDPASRTLLEVKVED----AAKADQIFNLLMGGEVAPRKAFIQSHSRTVKNLD 641


>gi|257076794|ref|ZP_05571155.1| DNA gyrase subunit B [Ferroplasma acidarmanus fer1]
          Length = 677

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 261/669 (39%), Positives = 380/669 (56%), Gaps = 37/669 (5%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           + +   A DNYDAS I+ILEGL+ VR  PGMYIG T    LHH+  EV+DN +DE +AG+
Sbjct: 28  SNSMDKAMDNYDASQIQILEGLKAVRKVPGMYIGSTGPDGLHHMVYEVVDNCIDEAMAGF 87

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
            + I + +  +G ++V D+GRGIPV+ HPK+  +  LEI++T LH+G KFD   Y+++GG
Sbjct: 88  GSDINIVIYKDGSISVEDDGRGIPVDIHPKY-KRPGLEIVMTELHSGAKFDKKVYKVTGG 146

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN------------ 201
           LHGVG+ VVNALSD L   V +   I+ +KF +G+P+S L+  +                
Sbjct: 147 LHGVGVHVVNALSDYLVAVVKKGTKIYYEKFQQGVPVSGLQVLDAKNKSADPEIGDIEMK 206

Query: 202 --KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
             + GT I F PD  IF     F    + +     A+L+  +    S  +         +
Sbjct: 207 YPEHGTIIKFYPDATIFDTI-DFSYPVISQRIMDLAFLNPNITIELSDLRS-------GK 258

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSY 318
            E+F+F GGL  Y+Q   + + +++ E    + E K      VE+A+ + +       S+
Sbjct: 259 HEKFHFDGGLVEYVQFLDQGKDIVNKEPIYCREEYK---EYVVEFALQYIDNVTGTEESF 315

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS-IISDDLMISAVGILSVFIREP 377
            N I T EGGTH +G    L+R + +YA+     + +S +I DD       +L V +  P
Sbjct: 316 VNNIKTPEGGTHITGFHTGLSRAVLEYAKAKNLVKGVSGLIGDDTREGLTAVLHVKMFNP 375

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F GQTK KL +   +  V +        Y    P  A  +++ V+  +  R   RK ++
Sbjct: 376 QFEGQTKEKLGNSVVKSIVSSITEKYLKDYFESYPPIADAIIKRVLAAAIAREASRKAKD 435

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
            V RKTA+    LPGKLADCS + +  TE++IVEGDSAGGSAKQARNR  QA+LPLRGKI
Sbjct: 436 LVRRKTALESGTLPGKLADCSSSDSDQTEVYIVEGDSAGGSAKQARNREYQAILPLRGKI 495

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556
           LNV  +   K   N++I +L+ A+G   + ++  ++LRY K+IIMTDADVDGAHI +LLL
Sbjct: 496 LNVEKSNDNKALENEEIKNLITAIGTNIKDKFEIKNLRYGKIIIMTDADVDGAHIRTLLL 555

Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616
           TFFY+ M +LI+  H++   PPLFR+ +G   VY   E+ K + + +  K+    + I R
Sbjct: 556 TFFYRFMNELIQGGHIYFAQPPLFRVQKGNDIVYVFSEDEKDREVAKMGKN----VVIQR 611

Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           FKGLGEM   QL ET M+   R L++V I   L          N LMG K + R KFI++
Sbjct: 612 FKGLGEMNPEQLWETTMNPESRKLVQVSIEDALY----ADQLFNILMGEKVEPRRKFIED 667

Query: 677 RASFIDDVG 685
            A ++ ++ 
Sbjct: 668 NAKYVQNLD 676


>gi|169235747|ref|YP_001688947.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Halobacterium
           salinarum R1]
 gi|167726813|emb|CAP13599.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Halobacterium
           salinarum R1]
          Length = 637

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 253/652 (38%), Positives = 373/652 (57%), Gaps = 22/652 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           S    Y A  I++LEGLE V+ RP MYIG TD + LHHL  EV+DN++DE +AGY + I+
Sbjct: 2   SDQSEYSAGQIQVLEGLEAVQKRPAMYIGSTDARGLHHLVYEVVDNSIDEALAGYCDRID 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+L  +G ++V D+GRGIPV  H ++ ++  +E+ILT LHAGGKFD  +Y++SGGLHGVG
Sbjct: 62  VTLHDDGSVSVTDDGRGIPVATHEEY-DRPAVEVILTVLHAGGKFDAKSYQVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+ L V V+R    + ++F RG P++ L+      +  GT I FRPD +IF  
Sbjct: 121 VSVVNALSERLAVEVSRDGARYREQFERGEPVTDLQHVGD-SDDSGTLIRFRPDSEIFET 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              +D + L    +  A+L+  V+   + ++        P +  F + GG++ +++   E
Sbjct: 180 -TAYDFSTLENRLRELAFLNSGVEITLTDER-----GDEPTQSTFEYEGGIREFVEYLNE 233

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIA-WCEENPEITSYCNTILTDEGGTHESGLRVA 337
            R+ +  ++   + E  G    +VE A+    +      ++ N I T EGGTH +G + A
Sbjct: 234 TRNALHDDVIYFQGEDDGI---SVEIAMQASEDVQSSTHAFANNINTREGGTHLTGFKTA 290

Query: 338 LTRGIKKYAELTQN---KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           LTR +  YA            ++  DD+      ++SV   +P+F GQTKTKL + + + 
Sbjct: 291 LTRTVNDYANDNNLLSELDGENLTGDDIREGLTAVISVKHPDPQFEGQTKTKLGNSEVRG 350

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            VE A+ D    Y  +NP  A  ++   +E ++ R   +K  E   RK+A+    LPGKL
Sbjct: 351 IVERAVNDGLGTYFEENPATAKAVVRTAVEAAKARKAAKKAEELTRRKSALGSTSLPGKL 410

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC        ELF+VEGDSAGGSAKQ RN   QA+LPL GKILNV     ++I  + ++
Sbjct: 411 ADCQSKAPEDAELFVVEGDSAGGSAKQGRNPGFQAILPLGGKILNVEKHRLDRILEHDEL 470

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ ALG     ++  ++LRYE +I+MTDADVDGAHI +LLLTFFY+ M  L+E  +++
Sbjct: 471 RHIITALGTGIGDEFDIDELRYENIIMMTDADVDGAHIRTLLLTFFYRHMKPLLEAGYVY 530

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
              PPL+RI    K+  A  E  +++I+EE         ++ RFKGLGEM   QL +T M
Sbjct: 531 AAQPPLYRIRYRGKTYDAMTEADRERIVEEQCNGNPT--QVQRFKGLGEMNPQQLWDTTM 588

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D   R L R+ +              + LMG   + R +FIQERA   + V 
Sbjct: 589 DPENRILKRITVED----AAAADKMFSVLMGDAVEPRKQFIQERAGDAEWVD 636


>gi|227511156|ref|ZP_03941205.1| DNA gyrase, B subunit [Lactobacillus buchneri ATCC 11577]
 gi|227085638|gb|EEI20950.1| DNA gyrase, B subunit [Lactobacillus buchneri ATCC 11577]
          Length = 647

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 252/657 (38%), Positives = 375/657 (57%), Gaps = 20/657 (3%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
               +  ++ YDAS I++LEGLE VR RPGMYIG T  + LHHL  E++DN +DE +AG+
Sbjct: 5   KETKKELANEYDASQIQVLEGLEAVRKRPGMYIGTTSSQGLHHLVWEIVDNGIDEALAGF 64

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A  I V+++ +  +TV D+GRGIPV+   K   K  LE + T LHAGGKF    Y++SGG
Sbjct: 65  ATKITVTVEKDNSITVTDDGRGIPVDIQKK-TGKPALETVYTILHAGGKFGGGGYKVSGG 123

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPD 212
           LHGVG SVVNALS+EL V V R   ++   FSRG   +P++  + V +   GT++ F PD
Sbjct: 124 LHGVGASVVNALSEELDVAVTRNGKVYYMDFSRGHVTTPMKVIDHVSDDLHGTKVHFLPD 183

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P IF +   FD   L    +  A+L+  ++      +        P +++F + GG++ Y
Sbjct: 184 PDIFRETTTFDIKVLTARLRELAFLNKELRIIVRDMR-----PEKPTEQDFLYEGGIRHY 238

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHE 331
           ++   +++  +  E    +    G    TVE AI + E+      ++ N I T EGGTHE
Sbjct: 239 VEYLDKDKETLLKEPIYVEGMDNGI---TVEVAIDYSEDYHSTLMTFTNNIHTYEGGTHE 295

Query: 332 SGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G + ALTR I  YA      +    ++  +D+      ++S+   +P+F GQTKTKL +
Sbjct: 296 EGFKRALTRVINDYARKNNLLKDNEANLSGEDVREGTTAVVSIKHPDPQFEGQTKTKLGN 355

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448
            DA+   +    D F  +L++NP  A K+++  +  S+ R   ++ RE   RK+ +    
Sbjct: 356 SDARTVTDRIFSDHFSKFLMENPKLARKIIDRGLLASKARSAAKRAREVTRRKSGLEISS 415

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLAD +      +ELFIVEGDSAGGSAKQ R R  QA+LP+RGKILNV  A  ++I 
Sbjct: 416 LPGKLADNTSKDPKISELFIVEGDSAGGSAKQGRARLTQAILPIRGKILNVEKASMDRIL 475

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            N++I  L  A+G      +    + Y K+IIMTDADVDGAHI +LLLT  Y+ M  LI+
Sbjct: 476 ANEEIRSLFTAMGTGFGDDFDLSKINYHKLIIMTDADVDGAHIQTLLLTLIYRYMRPLID 535

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             ++++  PPL+++ QG    Y   ++   + L   +     K  I R+KGLGEM A QL
Sbjct: 536 AGYVYVAQPPLYQVRQGKMQRYIDSDDDLNQFLGTLQPS--PKPVIQRYKGLGEMDAEQL 593

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +T M+   R LLRV    + +   +     + LMG K + R +FI++ A+F++++ 
Sbjct: 594 WDTTMNPENRHLLRV----ESSDAAEANHVFSMLMGDKVEPRREFIEDNATFVENLD 646


>gi|213964047|ref|ZP_03392290.1| DNA gyrase, B subunit [Capnocytophaga sputigena Capno]
 gi|213953329|gb|EEB64668.1| DNA gyrase, B subunit [Capnocytophaga sputigena Capno]
          Length = 658

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 258/661 (39%), Positives = 376/661 (56%), Gaps = 33/661 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y A +I+ LEG+E VRMRP MYIG    + LHHL  EV+DN++DE +AGY + I V+++
Sbjct: 14  DYSADNIQSLEGMEHVRMRPSMYIGDVGPRGLHHLVYEVLDNSIDEALAGYCDTISVTIN 73

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV DNGRGIPV+ H K    S L++++T + AGGKFD  +Y++SGGLHGVG+S V
Sbjct: 74  EDNSITVEDNGRGIPVDIHKK-EGVSALQVVMTKIGAGGKFDKGSYKVSGGLHGVGVSCV 132

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALSD L  TV R   I+ Q++ RG+ L P+++     +KRGT++TF PD  IF     +
Sbjct: 133 NALSDHLKATVYRDGKIWEQEYQRGVALYPVKQVGDT-DKRGTKVTFHPDELIFEQTTEY 191

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L    +  AYL+  +    +  +   EK      E+FY   GLK +++    NR  
Sbjct: 192 KYDTLAARIRELAYLNKGITITLTDLRNKDEKG-NFITEKFYSENGLKEFVKFLDGNRMP 250

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALTRG 341
           I   +   + EK G     VE A+ + +   E    Y N I T EGGTH  G R+ LTR 
Sbjct: 251 IIGGVIAMEGEKNGIP---VEVAMIYNDSYNENLHSYVNNINTSEGGTHLQGFRMGLTRT 307

Query: 342 IKKYAELTQ--------NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
           +K YA+ +          K  + I  DD       ++SV + EP+F GQTKTKL + +  
Sbjct: 308 LKAYADKSGLLEKMSKDKKNPVEIEGDDFREGLTAVISVKVAEPQFEGQTKTKLGNREVT 367

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLPGK 452
             V  A+    + YL +NP +A  ++E VI      +  R+ +  V RK+ +    LPGK
Sbjct: 368 SAVSQAVGQMLEDYLEENPNDAKTIVEKVILAAQARQAARKAREMVQRKSVMSGGGLPGK 427

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS+      ELF+VEGDSAGG+AKQ RN+ NQA+LPLRGKILNV  A   K+ ++ +
Sbjct: 428 LADCSEEDPTKCELFLVEGDSAGGTAKQGRNKDNQAILPLRGKILNVEKAMQHKVFDSDE 487

Query: 513 IMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
           I ++  ALG    ++   +      LRY KVIIM DADVDG+HI +L+LTFF++ M +LI
Sbjct: 488 IKNIYTALGVTVGTEEDAKALNLSKLRYHKVIIMCDADVDGSHITTLILTFFFRYMRELI 547

Query: 568 EQKHLFLISPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           E  H+++ +PPL+ +      +  YA +++ +  +  E      G + I R+KGLGEM  
Sbjct: 548 ENGHVYIATPPLYLVKSKSSKREEYAWNDKQRDALSAEM-----GNVTIQRYKGLGEMND 602

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL +T M+   RTL +V I+       +     + LMG +   R +FI++ A +   + 
Sbjct: 603 HQLWDTTMNPQHRTLRQVTIDNAT----EADRVFSMLMGDEVPPRREFIEKNAKYAK-ID 657

Query: 686 T 686
            
Sbjct: 658 A 658


>gi|111115263|ref|YP_709881.1| DNA gyrase, subunit B [Borrelia afzelii PKo]
 gi|110890537|gb|ABH01705.1| DNA gyrase, subunit B [Borrelia afzelii PKo]
          Length = 634

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 244/647 (37%), Positives = 368/647 (56%), Gaps = 19/647 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY AS+I++L+GLE VR RPGMYIG      LHHL  EVIDN++DE +AG+ + I+V ++
Sbjct: 2   NYVASNIQVLKGLEAVRKRPGMYIGSVSVNGLHHLVYEVIDNSIDEALAGFCDRIDVIIN 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV+DNGRGIP + H +    S LE++LT LH+GGKF+  TY++SGGLHGVGISVV
Sbjct: 62  LDNTITVIDNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L V + R   IF Q FS+GIP S +E   +     GT++TF  D +IF     +
Sbjct: 121 NALSSFLEVYINRDGKIFRQTFSKGIPTSKVEVVGESS-ITGTKVTFLADSEIFETL-DY 178

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L K  +  A+L+ ++       +   EK        FYF GG+K+++     +   
Sbjct: 179 NFDVLEKRLKELAFLNDKICISIEDKRFGKEKSSK-----FYFEGGIKSFVDYLTNDSKA 233

Query: 283 ISSEIFTGKT-EKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
             SE +              ++W  ++ +    I S+ N I T EGGTH  G R  LT+ 
Sbjct: 234 YQSESYYIDGLMNDVIVNVGLKWTESYSDN---ILSFVNNINTREGGTHVMGFRSGLTKA 290

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + +  + ++   K   ++  DD       ++SV + EP+F GQTK+KL + + ++ VE  
Sbjct: 291 MNEAFKNSKISKKDVPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIKKIVEII 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458
           + +     +  NP+E   +L   I+ +  R   RK R    +K A   L LPGKLADC+ 
Sbjct: 351 VYEHLLKIINLNPLEIDLILGKAIKAARAREAARKARESERKKNAFESLALPGKLADCTS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E++IVEGDSAGGSAK  RNR  QA+LPL GK+LNV     +K+  N +++ ++ 
Sbjct: 411 KNPLEREIYIVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           +LG      +    LRY K+IIM DADVDG+HI +LLL FF++ M +LIE  ++++  PP
Sbjct: 471 SLGAGVGKTFDITKLRYHKIIIMADADVDGSHIRTLLLAFFFRYMRELIENGYIYIAMPP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L++I    +  Y +DE+ K+K L   +   +  I + R+KGLGEM  +QL ET MD  +R
Sbjct: 531 LYKIKYDNRIYYFYDEKEKEKFLNSIETKNRNSILLQRYKGLGEMNPTQLWETTMDPARR 590

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +  + I+  +    + +     LMG   + R +FI++ A  + ++ 
Sbjct: 591 KMRLMNIDDAV----EAEKIFVTLMGDLVEPRKEFIEQNALNVINLD 633


>gi|188588443|ref|YP_001919471.1| DNA gyrase subunit B [Clostridium botulinum E3 str. Alaska E43]
 gi|251778873|ref|ZP_04821793.1| DNA gyrase, B subunit [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|188498724|gb|ACD51860.1| DNA gyrase, B subunit [Clostridium botulinum E3 str. Alaska E43]
 gi|243083188|gb|EES49078.1| DNA gyrase, B subunit [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 635

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 254/651 (39%), Positives = 382/651 (58%), Gaps = 21/651 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +  +  YD + I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AGY   I
Sbjct: 2   EQNNQKYDENQIQVLEGLEAVRKRPGMYIGSTSARGLHHLVYEIVDNSIDEALAGYCKNI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +  +T  D+GRG+PV  HPK    S +E+I+T LHAGGKF    Y++SGGLHGV
Sbjct: 62  KVKINKDNSITSSDDGRGMPVGMHPKMHK-SAVEVIMTILHAGGKFGGGGYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS++  VTV R+  I+ Q++S+G  L  L++        GT I F+PD +IF 
Sbjct: 121 GASVVNALSEQCIVTVKREGHIWQQEYSKGKVLYDLKQIGDTEE-SGTTIYFKPDAEIFD 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   FD   L +  +  A+L+  +       ++  E       E +Y+ GG+K+++    
Sbjct: 180 EV-EFDFDTLSQRLRELAFLNKGINITLIDCRDDRE-------ENYYYEGGIKSFVAYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRV 336
            N++ +  E    +  K      TVE  + + +   E    + N I T EGGTH  G + 
Sbjct: 232 RNKTPLHPEPIYVEGIKDKV---TVELGLQYNDGYTENLFSFANNIDTIEGGTHLVGFKT 288

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR    YA+      +   +   DD+      ++SV I +P+F GQTKTKL + + + 
Sbjct: 289 ALTRAFNDYAKRFGFIKENDKNFSGDDIREGLTAVISVKIEDPQFEGQTKTKLGNSEVKG 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454
            V++ + +    +L +NP  +  +++  +  +  R   RK RE+ RK+ + +  LPGKLA
Sbjct: 349 IVDSIVSEYIGIFLEENPGTSKIIIDKALMAARAREAARKARELTRKSVLERTTLPGKLA 408

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS       E++IVEGDSAGGSAKQ R+R  QA+LPLRGKI+NV     +KI N++ I 
Sbjct: 409 DCSSKDPRECEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKIMNVEKQRLDKILNSETIR 468

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            +V A G      +  E +RY ++IIMTDADVDGAHI +LLLTFFY+ M +L+EQ H+++
Sbjct: 469 SMVTAFGGGIGKDFDIEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMRELVEQGHVYI 528

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPLFR+ +G K  YA+ +    ++L++        ++I R+KGLGEM A+QL +T MD
Sbjct: 529 AQPPLFRVGKGKKETYAYSDAELDQVLQDMGGKDNS-VDIQRYKGLGEMNATQLWDTTMD 587

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +KR LL+ EI   +       +    LMG K + R +FI++ A  + ++ 
Sbjct: 588 PSKRILLKAEIEDAM----AADEIFTILMGEKVEPRREFIEQNAKNVVNLD 634


>gi|304385859|ref|ZP_07368203.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Pediococcus
           acidilactici DSM 20284]
 gi|304328363|gb|EFL95585.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Pediococcus
           acidilactici DSM 20284]
          Length = 648

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 253/661 (38%), Positives = 364/661 (55%), Gaps = 21/661 (3%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
                     +  YDAS I++LEGLE VR RPGMYIG T  + LHHL  E+IDN +DE +
Sbjct: 2   ADEKETKAELAKEYDASQIQVLEGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNGIDEAL 61

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AG+AN I+V ++ +  +TV DNGRGIPV+   K   K  LE + T LHAGGKF    Y++
Sbjct: 62  AGFANKIDVVVEKDNSITVSDNGRGIPVDIQKK-TGKPALETVYTVLHAGGKFGGGGYKV 120

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRIT 208
           SGGLHGVG SVVNALS EL   V R   I+   F +G   +P++     +  +  GT + 
Sbjct: 121 SGGLHGVGASVVNALSTELDARVMRDGKIYYIDFEQGKVKTPMKVLGPTKNPDDHGTIVH 180

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F PDP IF +   FD   L    +  A+L+  ++      +        P +++F + GG
Sbjct: 181 FVPDPDIFQETTVFDINILRTRIRELAFLNKGLRITLRDMR-----PENPTEDDFLYEGG 235

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEG 327
           ++ Y++   + + +I  E    +   KG    TVE A+ + E       ++ N I T EG
Sbjct: 236 IRHYVEYLNKGKEVIFPEPIYVEGITKGI---TVEVAMQYIEGYQSKLLTFTNNIHTYEG 292

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTHE G + ALTR I  YA+      +    +  DD+      ++SV   +P+F GQTKT
Sbjct: 293 GTHEEGFKRALTRVINDYAKNNGILKENDDKLSGDDVREGLTAVVSVKHPDPQFEGQTKT 352

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAI 444
           KL + DA+  V     + F  +L++NP  A ++++   +        +R +    +K+ +
Sbjct: 353 KLGNSDARTAVNEVFAETFSKFLLENPKVARQIVDKGTLAAKARIAAKRAREVTRKKSGL 412

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLAD +      +ELFIVEGDSAGGSAK  R+R  QA+LP+RGKILNV  A  
Sbjct: 413 ELNNLPGKLADNTSKDPEISELFIVEGDSAGGSAKAGRSRLTQAILPIRGKILNVEKATL 472

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           +++  N++I  L  ALG      +      Y K+IIMTDADVDGAHI +LLLT FY+ M 
Sbjct: 473 DRVLANEEIRSLFTALGTGFGEDFDVTKANYHKLIIMTDADVDGAHIRTLLLTLFYRYMR 532

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
            +I+  ++++  PPL+++ QG    Y   +E  + +L +       K  I R+KGLGEM 
Sbjct: 533 PMIDAGYVYIAQPPLYQVRQGKMIKYIDSDEELEAVLGQLSPS--PKPVIQRYKGLGEMD 590

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           A QL ET M+   R LLRV  +    +  D       LMG K + R KFI++ A F++++
Sbjct: 591 AEQLWETTMNPENRRLLRVSADDLDAANGD----FEMLMGDKVEPRRKFIEDNAVFVENL 646

Query: 685 G 685
            
Sbjct: 647 D 647


>gi|319440154|ref|ZP_07989310.1| DNA gyrase subunit B [Corynebacterium variabile DSM 44702]
          Length = 686

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 249/697 (35%), Positives = 367/697 (52%), Gaps = 51/697 (7%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86
            E   +    +   S +Y A  I ILEGLE VR RPGMYIG T E+ LHHL  EV+DN++
Sbjct: 2   AEAEMNAGPESHHGSGDYGADQITILEGLEAVRKRPGMYIGSTSERGLHHLIWEVVDNSV 61

Query: 87  DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146
           DE +AG+A+ +EV+L  +G + V DNGRGIPVE HP    + T+++++T LHAGGKFD+ 
Sbjct: 62  DEAMAGFADHVEVTLKDDGSVQVSDNGRGIPVEMHP--TGRPTVQVVMTELHAGGKFDSQ 119

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
            Y +SGGLHGVGISVVNALS  +   + R   ++ Q F   IP    +   K     GT 
Sbjct: 120 AYAVSGGLHGVGISVVNALSTRVETEIRRDGYLWHQVFDHSIPEELEQV--KKARGSGTT 177

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK----------------- 249
             F  DP+IF     ++   + +  Q  A+L+  +    + ++                 
Sbjct: 178 QRFWADPEIFET-TTYNFDTVSRRLQEMAFLNKGLTITLTDERRQVIEQVEDLEDAAADE 236

Query: 250 ------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                       E  +       + F++P GLK Y+    ++++ +   +   + +    
Sbjct: 237 AAAPKTADEEAEEQKKDAPKVRTKVFHYPDGLKDYVDHLNKSKTPVHPTVIDLEVKGDDH 296

Query: 298 HRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               VE A+ W     + + ++ NTI T EGGTHE G R ALT  + +YA   +    + 
Sbjct: 297 ---EVEIALQWNSGYSQSVHTFANTINTVEGGTHEEGFRAALTSLMNRYARDHKMLKDKE 353

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
            ++  DD       ++SV + +P+F GQTKTKL + + +  V+ A  +    +   NP E
Sbjct: 354 PNLTGDDCREGLAAVISVRVGDPQFEGQTKTKLGNSEIKGFVQKATNEHVADWFDANPAE 413

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   +  ++ R+  RK R+ V RK+A     LPGKLADC       +E++IVEGDS
Sbjct: 414 AKAIVNKAVSSAQARVAARKARDLVRRKSATDLGGLPGKLADCRSKDPVKSEIYIVEGDS 473

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKILNV  A  +K+  N ++  ++ ALG     ++    L
Sbjct: 474 AGGSAKSGRDSMFQAILPLRGKILNVEKARLDKVLKNAEVQAIITALGTGIHDEFDINKL 533

Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAH 592
           RY K+++M DADVDG HIA+LLLT  Y+ M  LIE+ H++L  PPL+++  G  +  +A 
Sbjct: 534 RYHKIVLMADADVDGQHIATLLLTLLYRFMRPLIEEGHVYLAMPPLYKLKWGKGEPGFAF 593

Query: 593 DEEHKQKILEEFKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648
            +  +   L E    G+ KI     I R+KGLGEM A +L ET MD   R L +V +   
Sbjct: 594 SDAERDAQLAEGLAAGR-KINKDDGIQRYKGLGEMNAKELWETTMDPQDRILKKVTLED- 651

Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
                D  ++   LMG     R  FI   A  +  + 
Sbjct: 652 ---AADADETFAVLMGDDVVARRSFITRNAKDVRFLD 685


>gi|153952676|ref|YP_001393441.1| DNA gyrase subunit B [Clostridium kluyveri DSM 555]
 gi|219853349|ref|YP_002470471.1| DNA gyrase B subunit [Clostridium kluyveri NBRC 12016]
 gi|146345557|gb|EDK32093.1| GyrB1 [Clostridium kluyveri DSM 555]
 gi|219567073|dbj|BAH05057.1| DNA gyrase B subunit [Clostridium kluyveri NBRC 12016]
          Length = 637

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 251/653 (38%), Positives = 368/653 (56%), Gaps = 22/653 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            Q     YD + I+ILEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AGY + 
Sbjct: 2   PQEKKQTYDENQIQILEGLEAVRKRPGMYIGSTSLRGLHHLVYEIVDNSIDEALAGYCDK 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+V +  +  +TV DNGRG+PV  H K   K T+E+I+T LHAGGKF    Y++SGGLHG
Sbjct: 62  IDVVIHEDNSVTVADNGRGMPVGIHHKI-KKPTVEVIMTILHAGGKFGGGGYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS+   V V R+  ++ Q F RG   + LE         GT+I F+PD +IF
Sbjct: 121 VGASVVNALSEICEVEVKREKHVWKQVFKRGKVATGLEIIGDSEEH-GTKIYFKPDKEIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   FD   L +  +  A+L+  +      ++   E       E F++ GG+K+++   
Sbjct: 180 DEV-DFDYDMLSQRLRELAFLNKGIAITLKDERSGKE-------ELFHYEGGIKSFVTYL 231

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
             N+  I  E    +  K      +VE A  +       I S+ N I T EGGTH +G +
Sbjct: 232 NRNKQTIHKEPIYVEGIK---GDYSVEIAFQYNNGYSENIFSFANNIDTIEGGTHLAGFK 288

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR    YA+      +   ++  +D+      ++S+ + +P+F GQTKTKL + + +
Sbjct: 289 SALTRVFNDYAKKFNILKENDKNLSGEDIREGITAVISIKLVDPQFEGQTKTKLGNSEVR 348

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
             V+N + +    +L +NP  A  +++  +  S  R   RK RE   RKT +    LPGK
Sbjct: 349 GIVDNIMAESLSDFLQENPQVAKTIIDKSLVASRAREAARKARELTRRKTVLENTSLPGK 408

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS       E+++VEGDSAGGSAKQ R+R  QA+LPLRGKI+NV     +KI   ++
Sbjct: 409 LADCSSKDPSECEIYLVEGDSAGGSAKQGRDRRFQAILPLRGKIMNVEKQRLDKILGYEE 468

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++ A G      +    +RY K+IIMTDADVDGAHI +LLLTFFY+ M +L+E+ H+
Sbjct: 469 IRAMITAFGAGIGKDFDISKIRYNKIIIMTDADVDGAHIRTLLLTFFYRYMRELVEKCHV 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL+++ +  K  YA+ ++    +L E        + I R+KGLGEM + QL +T 
Sbjct: 529 YIAQPPLYKVAKNKKDYYAYSDKELDILLNEIGGKN-SNVNIQRYKGLGEMDSEQLWDTT 587

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           M+   RTL++V +   +       +    LMG K + R  FI E A  + ++ 
Sbjct: 588 MNPETRTLIQVNVEDTI----AADEIFTILMGDKVEPRKDFIIENAKKVVNLD 636


>gi|325336741|gb|ADZ13015.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Riemerella anatipestifer RA-GD]
          Length = 644

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 251/656 (38%), Positives = 383/656 (58%), Gaps = 22/656 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           ++  Y ASSI+ LEG+E VR+RP MYIG    + LHHL  EV+DN++DE +AGY + I V
Sbjct: 2   SNKQYTASSIQSLEGIEHVRLRPSMYIGDVGVRGLHHLVYEVVDNSIDEALAGYCDTITV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++     ++V DNGRGIPV+ H K   KS LE+++T + AGGKFD  +Y++SGGLHGVG+
Sbjct: 62  TIHEGNAISVKDNGRGIPVDFHEK-EQKSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           S VNALS     TV ++  I+ QK+S+G  L  +++     + RGT + F+PD  IF + 
Sbjct: 121 SCVNALSTSTIATVYKEGKIYQQKYSKGRALEDVQEIG-TTDYRGTEVFFQPDDSIFNEL 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             ++   L    +  A+L+  +    + ++   EK      E F   GGLK +++    N
Sbjct: 180 V-YNYDTLSARLRELAFLNKGINITITDERVKDEKG-EFLTETFLSEGGLKEFVEFIDGN 237

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVAL 338
           R  I   +   + E+       VE A+ +     E    Y N I T EGGTH +G R AL
Sbjct: 238 RESIMENVIFMEGERDDIP---VEVAMRYNTSFTENLHSYVNNINTHEGGTHLTGFRRAL 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +KKYA+      K  + I  DD       ++SV + EP+F GQTKTKL + +    V
Sbjct: 295 TRTLKKYADDLGIPQKEKVEITGDDFREGLTAVISVKVMEPQFEGQTKTKLGNSEVSGAV 354

Query: 397 ENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           +  + +   ++L +NP EA ++++  V+     +  ++ +  V RK+ +    LPGKL+D
Sbjct: 355 DKIVGEMLTNFLEENPTEAKQIVQKVVLAAKARQAAKKAREMVQRKSPMGGAGLPGKLSD 414

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS      +E+F+VEGDSAGG+AKQ R+R  QA+LPLRGKILNV  +   K+  N++I +
Sbjct: 415 CSSKDPAESEIFLVEGDSAGGTAKQGRDRHFQAILPLRGKILNVEKSMIHKVYENEEIKN 474

Query: 516 LVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           +  ALG    ++   +      LRY K++IMTDAD+DG+HI++L+LTFF++ M +LIEQ 
Sbjct: 475 IYTALGVSVGTEEDSKALNLSKLRYHKIVIMTDADIDGSHISTLILTFFFRYMKELIEQG 534

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++ SPPL+ + +G K VYA +E+ +++   E    GKG +E+ R+KGLGEM   QL E
Sbjct: 535 YVYIASPPLYLLKKGNKKVYAWNEKEREEKTLEMSADGKG-VEVQRYKGLGEMNPEQLWE 593

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           T ++   R L +V I        +     + LMG +   R +FI++ A +   +  
Sbjct: 594 TTLNPENRILKQVNIENAG----EADRIFSMLMGDEVPPRREFIEKNAVYAK-IDA 644


>gi|270289888|ref|ZP_06196114.1| DNA gyrase, B subunit [Pediococcus acidilactici 7_4]
 gi|270281425|gb|EFA27257.1| DNA gyrase, B subunit [Pediococcus acidilactici 7_4]
          Length = 648

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 253/661 (38%), Positives = 364/661 (55%), Gaps = 21/661 (3%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
                     +  YDAS I++LEGLE VR RPGMYIG T  + LHHL  E+IDN +DE +
Sbjct: 2   ADEKETKAELAKEYDASQIQVLEGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNGIDEAL 61

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AG+AN I+V ++ +  +TV DNGRGIPV+   K   K  LE + T LHAGGKF    Y++
Sbjct: 62  AGFANKIDVVVEKDNSITVSDNGRGIPVDIQKK-TGKPALETVYTVLHAGGKFGGGGYKV 120

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRIT 208
           SGGLHGVG SVVNALS EL   V R   I+   F +G   +P++     +  +  GT + 
Sbjct: 121 SGGLHGVGASVVNALSTELDARVMRDGKIYYIDFEQGKVKTPMKVLGPTKNPDDHGTIVH 180

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F PDP IF +   FD   L    +  A+L+  ++      +        P +++F + GG
Sbjct: 181 FVPDPDIFQETTVFDINILRTRIRELAFLNKGLRITLRDMR-----PEKPTEDDFLYEGG 235

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEG 327
           ++ Y++   + + +I  E    +   KG    TVE A+ + E       ++ N I T EG
Sbjct: 236 IRHYVEYLNKGKEVIFPEPIYVEGITKGI---TVEVAMQYIEGYQSKLLTFTNNIHTYEG 292

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTHE G + ALTR I  YA+      +    +  DD+      ++SV   +P+F GQTKT
Sbjct: 293 GTHEEGFKRALTRVINDYAKNNGILKENDDKLSGDDVREGLTAVVSVKHPDPQFEGQTKT 352

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAI 444
           KL + DA+  V     + F  +L++NP  A ++++   +        +R +    +K+ +
Sbjct: 353 KLGNSDARTAVNEVFAETFSKFLLENPKVARQIVDKGTLAAKARIAAKRAREVTRKKSGL 412

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLAD +      +ELFIVEGDSAGGSAK  R+R  QA+LP+RGKILNV  A  
Sbjct: 413 ELNNLPGKLADNTSKDPEISELFIVEGDSAGGSAKAGRSRLTQAILPIRGKILNVEKATL 472

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           +++  N++I  L  ALG      +      Y K+IIMTDADVDGAHI +LLLT FY+ M 
Sbjct: 473 DRVLANEEIRSLFTALGTGFGEDFDVTKANYHKLIIMTDADVDGAHIRTLLLTLFYRYMR 532

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
            +I+  ++++  PPL+++ QG    Y   +E  + +L +       K  I R+KGLGEM 
Sbjct: 533 PMIDAGYVYIAQPPLYQVRQGKMIKYIDSDEELEAVLGQLSPS--PKPVIQRYKGLGEMD 590

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           A QL ET M+   R LLRV  +    +  D       LMG K + R KFI++ A F++++
Sbjct: 591 AEQLWETTMNPENRRLLRVSADDLDAANGD----FEMLMGDKVEPRRKFIEDNAVFVENL 646

Query: 685 G 685
            
Sbjct: 647 D 647


>gi|289705900|ref|ZP_06502279.1| DNA gyrase, B subunit [Micrococcus luteus SK58]
 gi|289557385|gb|EFD50697.1| DNA gyrase, B subunit [Micrococcus luteus SK58]
          Length = 720

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 259/723 (35%), Positives = 364/723 (50%), Gaps = 50/723 (6%)

Query: 7   DLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASD-----NYDASSIRILEGLEPVRMR 61
           D     P +   ++        +PD+         D      Y AS+I +LEGLE VR R
Sbjct: 3   DAMPENPAEEPTAASAAPNPEAVPDAVGQPEAPVKDRKVPGEYGASAITVLEGLEAVRKR 62

Query: 62  PGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENH 121
           PGMYIG T  + LHHL  EV+DN++DE +AGYA  I+V+L  +G + V D+GRGIPV+ H
Sbjct: 63  PGMYIGSTGPRGLHHLVYEVVDNSVDEALAGYATGIDVTLQADGGVRVADDGRGIPVDLH 122

Query: 122 PKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFS 181
           P    + T+E+++T LHAGGKF    Y +SGGLHGVGISVVNALS  +   V RQ  ++ 
Sbjct: 123 P-TEGRPTVEVVMTILHAGGKFGGGGYAVSGGLHGVGISVVNALSRRVDTEVRRQGHVWR 181

Query: 182 QKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241
             F+ G        K +  +  GT  TF PDP+IF     FD   L    Q  A+L+  +
Sbjct: 182 MSFADGGVPQGELVKGEAMDATGTVQTFYPDPEIFDS-IEFDYETLRARFQQMAFLNRGL 240

Query: 242 KTCWSCDK----------------------------EIAEKYGIPEKEEFYFPGGLKTYL 273
           +   + ++                            E AE+        + +  GL  Y+
Sbjct: 241 RITLTDERVQESNEVVDDEIAGEGAAGEDVAENGLAEEAEQEPQRRSVTYLYENGLLDYV 300

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRG---TVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
           Q     + +          E +    G    VE A+ W       + +Y NTI T EGGT
Sbjct: 301 QHLNSAKKVEYVHDDVIAFEAEDVSDGRSMAVEVAMQWTSAYSESVHTYANTINTHEGGT 360

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           HE G R ALT  + +YA   +    +  ++  +D+      ++SV + EP+F GQTKTKL
Sbjct: 361 HEEGFRAALTSLVNRYAREKEILKPKEDNLTGEDIREGLTAVISVKLSEPQFEGQTKTKL 420

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRK 446
            + +A+  V  A+ D    +  +NP  A +++   I  S  RL  RK R+  R+ + +  
Sbjct: 421 GNSEARGFVSKAVTDHLGDWFERNPGPAKEIIRKAIMASHARLAARKARDNARRKSPLES 480

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             +PGKLADCS       E++IVEGDSAGGSAKQ RN   QA+LPLRGKILNV  A  +K
Sbjct: 481 FGMPGKLADCSSKDPERCEVYIVEGDSAGGSAKQGRNPETQAILPLRGKILNVERARLDK 540

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
              N +I  ++ A G     ++    LRY K+++M DADVDG HI +LLLT  ++ M  L
Sbjct: 541 ALGNAEIQSMITAFGTNIGEEFDISKLRYHKIVLMADADVDGQHITTLLLTVLFRYMRPL 600

Query: 567 IEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGE 622
           IE  H+FL  PPL+RI        Y   +E +   +E     G    +   + R+KGLGE
Sbjct: 601 IEAGHVFLAQPPLYRIKWSNAPHDYVFSDEERDAAVEAGLAKGWRYPKDNGVQRYKGLGE 660

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           M   +L +T MD   RTLL+V +              + LMG   + R  FIQ+ A  I 
Sbjct: 661 MNYQELWDTTMDPEHRTLLQVTMED----AAAADAVFSMLMGEDVESRRSFIQQNAKDIR 716

Query: 683 DVG 685
            + 
Sbjct: 717 FLD 719


>gi|255264201|ref|ZP_05343543.1| DNA topoisomerase IV, B subunit [Thalassiobium sp. R2A62]
 gi|255106536|gb|EET49210.1| DNA topoisomerase IV, B subunit [Thalassiobium sp. R2A62]
          Length = 652

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 353/650 (54%), Positives = 458/650 (70%), Gaps = 10/650 (1%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +ASD YDASSI +LEGLEPVR+RPGMYIGGTDE+ALHHL +EV+DN+MDE +AG+A  IE
Sbjct: 9   AASDTYDASSIEVLEGLEPVRLRPGMYIGGTDERALHHLVAEVLDNSMDEAVAGHATRIE 68

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V L  +  +T+ DNGRGIP++ HPKFP+KS LE+IL TLHAGGKF+   Y+ SGGLHGVG
Sbjct: 69  VELHTDYSVTIRDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFNGKAYQTSGGLHGVG 128

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALSD + V VAR   ++ Q+FSRGIP  P++K     N+RGT +TF  D +IFG 
Sbjct: 129 ASVVNALSDIMIVQVARDRELYEQRFSRGIPQGPVKKIGAAPNRRGTTVTFHADEEIFGS 188

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F  +RLLK  +SKAYL   V+  W   K        P +  F+FPGGL  YL+  L 
Sbjct: 189 -HRFKPSRLLKSIRSKAYLFSGVEIRW---KTAIVDGDTPMEATFHFPGGLADYLRETLG 244

Query: 279 NRSLISSEIFTGKTE--KKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLR 335
             S  + + F+G  E  +K    G VEWAI W       I SYCNT+ T EGGTHE+G  
Sbjct: 245 QASTYAEQPFSGIVEFQEKFNVPGKVEWAINWTPSREGFIQSYCNTVPTPEGGTHEAGFW 304

Query: 336 VALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            A+ +GI+ Y EL  N++A SI  +DL+     ++S FIREPEF GQTK +L + +AQR 
Sbjct: 305 AAILKGIRAYGELVSNRKASSITREDLVAGGCALVSCFIREPEFVGQTKDRLATTEAQRM 364

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           VENA+RD FD++L  +   A  +L+++I R+EERLRRR+++E  RK+A +KLRLPGKL D
Sbjct: 365 VENAVRDHFDNWLAADTKSAGAILDYLILRAEERLRRRQEKETARKSATKKLRLPGKLVD 424

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS N   GTELFIVEGDSAGGSAK AR+R  QA+LPLRGKILNV  A S K+ +N +I D
Sbjct: 425 CSSNTRDGTELFIVEGDSAGGSAKMARDRKTQALLPLRGKILNVLGAASSKLGSNAEISD 484

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           L QALG    +++  +DLRY+KVIIMTDADVDGAHIA+LL+TFF+ +M  +I+  HL+L 
Sbjct: 485 LTQALGVGLGTKFNVDDLRYDKVIIMTDADVDGAHIAALLMTFFFTQMRPMIDAGHLYLA 544

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPLFR+TQG K VY  DE  K++ +++    GKGKI++SRFKGLGEM A  LK+T M+ 
Sbjct: 545 CPPLFRLTQGAKRVYCIDELEKERHMDK-GLGGKGKIDVSRFKGLGEMDAKDLKDTTMNP 603

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             R L+RV I++DL    +T D + +LMG K + RF++IQE A F++++ 
Sbjct: 604 KTRKLIRVTIDEDL--PGETSDLVERLMGKKPEMRFQYIQENARFVEELD 651


>gi|257898812|ref|ZP_05678465.1| gram positive topoisomerase IV [Enterococcus faecium Com15]
 gi|257836724|gb|EEV61798.1| gram positive topoisomerase IV [Enterococcus faecium Com15]
          Length = 681

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 249/657 (37%), Positives = 359/657 (54%), Gaps = 33/657 (5%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +  ++ Y+ SSI++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DE ++GY + 
Sbjct: 2   AKKVNNEYNDSSIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGSE 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+V++  +  +TV D+GRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHG
Sbjct: 62  IDVTIHEDNSITVADSGRGMPVGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHG 119

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           VG SVVNALS  L VT+ R    + QKF  G  P   L+K  K R   GT + F PD  I
Sbjct: 120 VGASVVNALSKWLTVTIVRDGIEYQQKFKNGGKPDGTLKKIGKTRKANGTIVHFLPDDTI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     F    L +  +  A+L   VK   S  +          KE F++  G+K ++  
Sbjct: 180 FSTT-KFSYEILAERLRESAFLLKGVKISLSDLR-----GEESVKEVFHYEEGIKEFVDY 233

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
             E +  ++  +     EK+G     VE A  + +   E   S+ N + T +GGTHE+G+
Sbjct: 234 LNEEKDTLTPVV-YFSGEKEGI---EVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGM 289

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390
           + A+T+   +YA       +R  ++   D       +LS+ + E   +F GQTK KL + 
Sbjct: 290 KAAMTKSYNEYARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTP 349

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---L 447
            A+  V+N + +    YL +N   +  L+   I+  E R   RK RE +R    RK    
Sbjct: 350 VARTVVDNVISEQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGES 409

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            L GKL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I
Sbjct: 410 LLSGKLTPAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDI 469

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N++I  ++  +G     ++  ED  Y+KVIIMTDAD DGAHI  LLLTFFY+ M  LI
Sbjct: 470 LKNEEINTMIYTIGAGVGPEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLI 529

Query: 568 EQKHLFLISPPLFRITQG---TKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
           E   +++  PPL+++++G    + + YA  ++    ++++  K       + R+KGLGEM
Sbjct: 530 EAGKVYIALPPLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGK----GYMLQRYKGLGEM 585

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            A QL ET MD   RTL+RV I+         +  +  LMG K + R K+I+    F
Sbjct: 586 NAEQLWETTMDPTSRTLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIENHVQF 638


>gi|309389293|gb|ADO77173.1| DNA gyrase subunit B [Halanaerobium praevalens DSM 2228]
          Length = 638

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 254/648 (39%), Positives = 377/648 (58%), Gaps = 22/648 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y+A+ I++L+GLE VR RPGMYIG T  K LHHL  EV+DN++DE +AG  + I+V++
Sbjct: 8   KDYNANQIQVLKGLEAVRKRPGMYIGSTGIKGLHHLVWEVVDNSIDEFLAGNGDQIKVTI 67

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
                +TV D GRGIP + H +      ++++LTTLHAGGKF+NS+Y++SGGLHGVG+SV
Sbjct: 68  HQGEEITVEDFGRGIPADTHQE-TGLPAVQVVLTTLHAGGKFNNSSYKVSGGLHGVGVSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS EL +T   +   + Q + +G P+  L+K  K   + GT I F+PD +IF  +  
Sbjct: 127 VNALSSELEITTHWEGHKYQQHYKKGAPVDKLKKIGKT-ERSGTIIRFKPDSEIFTAR-E 184

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F    L    Q  AYL+  +      ++             F + GG+K +++   ++R+
Sbjct: 185 FKFENLAHRLQESAYLNKELTLSLRDERGEEVVEKE-----FQYDGGIKAFVEFLNKDRN 239

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
           +I+++I   +++        VE A+ + +     I SY N I T +GG H +G + ALTR
Sbjct: 240 IINNDIIYFESKPDD---YEVEIAVQYNDGYNERIFSYANNINTIDGGYHLTGFKTALTR 296

Query: 341 GIKKYAELTQNK--RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +  +A+       +  S+   D+      +++V + EP+F GQTKTKL + + +  VE+
Sbjct: 297 AVNNFAKNNNKLPAKISSLNGKDVREGITAVINVKLPEPQFEGQTKTKLGNSEIRSIVES 356

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            +      Y   NP  A K+++  ++    R   +K RE   RKTA+    LPGKLADCS
Sbjct: 357 EVYQYLSLYFDTNPDLAKKIIDKAVQAVRARKASKKARELTKRKTALSSNSLPGKLADCS 416

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
              +  +ELFIVEGDSAGGSAKQ R R  QA+LPL+GKILNV  A  +KI NN ++  ++
Sbjct: 417 SKKSEESELFIVEGDSAGGSAKQGRERKFQAILPLKGKILNVERARLDKILNNNEVAAII 476

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG      +  E LRY K++IMTDADVDGAHIA+L+LT FY+ M +LIE  H++L  P
Sbjct: 477 TALGAGIGEDFNLEKLRYHKIVIMTDADVDGAHIATLILTLFYRYMPELIENGHIYLAKP 536

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+++T+  KS Y + ++  +   +E   +      + R+KGLGEM   QL  T MD   
Sbjct: 537 PLYKVTKRKKSHYLYSDQALETFRKE---NENSSFSLQRYKGLGEMNPEQLWATTMDPQN 593

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           R L +VEI+  +    +  D   +LMG+ A  R +FI   A     + 
Sbjct: 594 RVLQKVEIDDKI----EADDIFTRLMGSNASLRKEFIFNNAELAQTID 637


>gi|62866002|gb|AAY17151.1| DNA gyrase B [Borrelia turicatae]
          Length = 634

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 243/647 (37%), Positives = 368/647 (56%), Gaps = 19/647 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y AS+I++L+GLE VR RPGMYIG      LHHL  EV+DN++DE +AG+ + IEV ++
Sbjct: 2   SYVASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLVYEVVDNSIDEALAGFCDKIEVVIN 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV DNGRGIP + H +    S LE++LT LH+GGKF+  TY++SGGLHGVGISVV
Sbjct: 62  SDNSVTVNDNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L V V+R    F Q +SRGIP S +E    V + RGT++TF  D +IF     +
Sbjct: 121 NALSSFLEVVVSRDGNFFKQTYSRGIPTSEVEIVG-VSSNRGTKVTFLADSEIFETL-EY 178

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L K  +  A+L+ +++      +   E++       FYF GG+K ++     N   
Sbjct: 179 DFETLSKRLRELAFLNDKIRISIEDKRLGKERFLE-----FYFEGGIKAFVDFITNNSKN 233

Query: 283 ISSEIFTGKT-EKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
           I SE +  +           ++W   + +    I S+ N I T EGGTH +G +    + 
Sbjct: 234 IQSEPYFIEGTYDDVIVSVGLKWTEGYSDN---ILSFVNNINTREGGTHVAGFKSGFLKA 290

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + +  + ++   K   ++  DD       ++S+ + EP+F GQTK KL +   ++ VE  
Sbjct: 291 MSEAFKDSKISKKDVPNLTLDDFKEGLTAVISIKVPEPQFEGQTKGKLGNSYIKKIVETI 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458
           + +     +V N +E   +L   I  +  R   RK R    +K+A   L LPGKLADC+ 
Sbjct: 351 VHNELLKVIVNNLLEVDIILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCAS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E++IVEGDSAGGSAK  R+R  QA+LPL GK+LNV     +K+  N +++ ++ 
Sbjct: 411 KNPVEREIYIVEGDSAGGSAKMGRDRFYQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           +LG      +  E LRY K+IIM DADVDG+HI +LLLTFF++ M +LI+  H+++  PP
Sbjct: 471 SLGAGVGKNFYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIDNGHVYIAMPP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L++I       Y +D+  K+  L   +   + KI + R+KGLGEM  +QL ET M+   R
Sbjct: 531 LYKIKYENSVHYFYDDSEKEVFLSSIETGKRDKISLQRYKGLGEMNPTQLWETTMNPATR 590

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +  +EI+  +      ++    LMG   + R +FI++ A  + ++ 
Sbjct: 591 KMKLIEIDDAI----QAENIFVTLMGDDVEPRREFIEQNALDVVNLD 633


>gi|88602335|ref|YP_502513.1| DNA gyrase, B subunit [Methanospirillum hungatei JF-1]
 gi|88187797|gb|ABD40794.1| DNA gyrase subunit B [Methanospirillum hungatei JF-1]
          Length = 675

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 261/680 (38%), Positives = 374/680 (55%), Gaps = 47/680 (6%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S+ Y++ +I+IL GLEPVR RP MYIG TD + LHHL  EV+DN++DE +AGY   I+V 
Sbjct: 7   SNTYNSENIKILRGLEPVRERPAMYIGSTDSRGLHHLVYEVVDNSIDEALAGYCTHIQVV 66

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +G ++V DNGRGIP++      NK+ LE +LT LHAGGKFD +TY++SGGLHGVG+S
Sbjct: 67  IHQDGSVSVEDNGRGIPIDPMKDNDNKTALETVLTVLHAGGKFDKNTYQVSGGLHGVGVS 126

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV--------------------- 199
           VVNALS EL  TV +    +   FSRG P + LEKKE+                      
Sbjct: 127 VVNALSVELTATVWKDGYEYRMFFSRGQPQTDLEKKEEDFEEIKDRYIKRYGSLPDNCPE 186

Query: 200 ----------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
                         GT I F+PD KIF     FD   L    +  A+L+  +    + ++
Sbjct: 187 TKEEFLNRYLSKISGTMIRFKPDSKIFET-IEFDYDILAHRLRELAFLNSGITISIADER 245

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
               +      E F + GG+  Y++        I   + +    K    R  V+ A  + 
Sbjct: 246 ---CEDLEECSEVFSYEGGISEYVRYLNHEAQPIHESVISFS-RKDEEARVEVDIAFQYA 301

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISA 366
                ++ +Y N++ T EGGTH  G R ALT+ I K  +  +  +  +  +  DD+    
Sbjct: 302 AAYSEKVYTYVNSVNTKEGGTHLEGFRSALTKAINKMGKENKAIKDQNLSLKGDDVREGL 361

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             I+SV +  P+F GQTK KL + + +  V++ +      Y  ++P E   +++  +   
Sbjct: 362 TAIISVRMANPQFEGQTKMKLGNSEVKGIVDSLVYASLCEYFEEHPKELAAIVDKAVLAY 421

Query: 427 EERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
           + R   RK +E+ R+ + +    LPGKLADCS+  A  +E++IVEGDSAGGSAKQ R+R 
Sbjct: 422 QAREAARKAKELARRKSTLESSGLPGKLADCSERSAEKSEIYIVEGDSAGGSAKQGRDRR 481

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545
            QA+LPLRGKILNV  A   KI  N +I  L+ A+G      +  E  RY  +IIMTDAD
Sbjct: 482 FQAILPLRGKILNVEKATVHKILKNNEIQALISAIGTGVGESFDIEKARYHHIIIMTDAD 541

Query: 546 VDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605
           VDGAHI++LL+TFF++ +  LIE  +++L  PPL+RI +G +  YA+ EE  ++IL+E  
Sbjct: 542 VDGAHISTLLMTFFFRYLQPLIEAGYIYLAQPPLYRIAKGKQEKYAYTEEEMKEILQEMG 601

Query: 606 KHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT 665
           + G   + + R+KGLGEM ASQL  T MD   R L RV I           +   KLMG 
Sbjct: 602 EKG---VNVQRYKGLGEMNASQLWATTMDPETRVLKRVVIED----AAYANEIFEKLMGD 654

Query: 666 KADERFKFIQERASFIDDVG 685
               R  FI+  A  + ++ 
Sbjct: 655 DVTARRDFIKRHAKEVTNLD 674


>gi|241895511|ref|ZP_04782807.1| DNA topoisomerase (ATP-hydrolyzing) [Weissella paramesenteroides
           ATCC 33313]
 gi|241871257|gb|EER75008.1| DNA topoisomerase (ATP-hydrolyzing) [Weissella paramesenteroides
           ATCC 33313]
          Length = 648

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 261/653 (39%), Positives = 373/653 (57%), Gaps = 22/653 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + +D+YDAS I++LEGLE VR RPGMYIG T  + LHHL  E++DN +DE +AG+AN I 
Sbjct: 11  TQADDYDASQIQVLEGLEAVRKRPGMYIGSTSSQGLHHLVWEIVDNGIDEALAGFANHIT 70

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+++ +  +TV+DNGRGIPV+   K   K  LE + T LHAGGKF    Y++SGGLHGVG
Sbjct: 71  VTIEKDNSITVIDNGRGIPVDIQVK-TGKPALETVFTILHAGGKFGGGGYKVSGGLHGVG 129

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK--KEKVRNKRGTRITFRPDPKIF 216
            SVVNALS  L V V R    F+  F RG   + + +   +     RGT + F PDP IF
Sbjct: 130 ASVVNALSTNLDVLVVRDGKGFAMDFERGHVKTEMHEIAIDDKPVSRGTIVHFAPDPDIF 189

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   FD   L+   +  A+L+  ++   +  +        P  E F++ GG+K Y+   
Sbjct: 190 RETTVFDYKTLMNRVRELAFLNKGLRISITDMR-----PEEPVVESFHYEGGIKEYVDFL 244

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335
             N+ +I +E    +  +       VE ++ + ++      S+ N I T EGGTHE+G +
Sbjct: 245 NVNKDVIFNEPIYVEGMENDI---DVEVSLQYTDDFHSNLLSFTNNIHTYEGGTHETGFK 301

Query: 336 VALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR I  YA   +  +        DD+      I+SV   +P+F GQTKTKL + DA+
Sbjct: 302 SALTRVINDYARKNKILKDNDDPLSGDDVREGLTAIVSVKHPDPQFEGQTKTKLGNSDAR 361

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
             V+    + F  ++++NP  A +++E  I   + R+  ++ RE   +K+ +    LPGK
Sbjct: 362 TAVDRMFSETFARFMMENPTTAKQIVEKGILAGKARMAAKRAREATRKKSGLEIANLPGK 421

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LAD +      +ELFIVEGDSAGGSAKQ R R  QA+LP+RGKILNV  A  EKI  N +
Sbjct: 422 LADNTSKDPEISELFIVEGDSAGGSAKQGRERLTQAILPIRGKILNVEKASMEKILGNDE 481

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  L  A+G    + +     +Y K+IIMTDADVDGAHI +LLLT  Y+ M  L+E  ++
Sbjct: 482 IRSLFTAMGTGFGTDFDVTKAKYHKLIIMTDADVDGAHIRTLLLTLIYRYMRPLLEAGYV 541

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL+++ QG    Y   +   + +L         K  I R+KGLGEM ASQL ET 
Sbjct: 542 YIAQPPLYQVRQGKFIKYLDADSELEALLPTLPAS--PKPIIQRYKGLGEMDASQLWETT 599

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           MD + R LLRVE++  +    +     + LMG K + R KFI+E A + + + 
Sbjct: 600 MDPSVRRLLRVEMDDAI----EADMIFSMLMGDKVEPRRKFIEENAQYAE-LD 647


>gi|257065525|ref|YP_003151781.1| DNA gyrase, B subunit [Anaerococcus prevotii DSM 20548]
 gi|256797405|gb|ACV28060.1| DNA gyrase, B subunit [Anaerococcus prevotii DSM 20548]
          Length = 633

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 258/648 (39%), Positives = 378/648 (58%), Gaps = 23/648 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NYDA +IR+LEGLEPVR+RPGMYIG T EK LHHL  EV+DN++DE +AG  + I+V++
Sbjct: 4   NNYDAGNIRVLEGLEPVRLRPGMYIGSTSEKGLHHLVYEVVDNSVDEALAGRCDYIKVTV 63

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  + V D+G GIPV+ HP   +KSTLE +LT LHAGGKFD+S Y+ SGGLHGVG+SV
Sbjct: 64  TKDNVIKVEDDGSGIPVKEHP-TTHKSTLETVLTVLHAGGKFDDSAYQFSGGLHGVGVSV 122

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+ L   V R   I+   F++G   S LE      ++ GT ITF+PD +IF     
Sbjct: 123 VNALSEYLIAEVKRDGHIYKMTFAKGEVTSDLEIIGDT-DETGTTITFKPDGEIFDTTI- 180

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L    +  A+L+  V+     +++          E F + GG+K ++     N++
Sbjct: 181 FDRKTLENRFREMAFLNKGVEIILEDERD-------DFSESFKYEGGIKEFVTYLNRNKT 233

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I  ++      ++      VE +  + +     I +Y N I T EGGTH SG R ALTR
Sbjct: 234 PIMEQVPHFDGMQEDI---EVEVSFQYTDGYSENILTYANNIHTPEGGTHLSGFRSALTR 290

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +  YA   +   +   ++  DD+      ++S+ I +P+F GQTK KL + + +  V+ 
Sbjct: 291 TVNDYARNFKFLKENDENLQGDDIREGITAVVSIKISDPQFEGQTKAKLGNSEVRGAVDT 350

Query: 399 ALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
            +      YL +NP  A  ++ + +  R      R+ +    +++ +    LPGKLADC 
Sbjct: 351 FVSQRLQAYLEENPKPAKNIIEKALASRRAREAARKARDLTRKRSILDSTTLPGKLADCQ 410

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                  E+FIVEG+SAGGSAK  R+   QA+LPLRGKI+NV  A  ++I N+++I  ++
Sbjct: 411 STDLSENEIFIVEGNSAGGSAKGGRDNRIQAILPLRGKIMNVEKANLDRILNSEEIKAMI 470

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A G     ++    LRY K+IIMTDADVDGAHI +LLLTFFY+ M  LI++ H+++  P
Sbjct: 471 TAFGTGIGKEFDISKLRYGKIIIMTDADVDGAHIRTLLLTFFYRYMKPLIDEGHVYVAQP 530

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL++I+ G    Y + +  + K+L+E         +I+R+KGLGEM A QL +T MD + 
Sbjct: 531 PLYKISHGRNERYVYTDAERDKVLKELNVDN---YKINRYKGLGEMNADQLWDTTMDPDH 587

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           R LLRV    +      T D+ + LMG K + R  FIQE A ++ ++ 
Sbjct: 588 RVLLRVN---EDLDSTSTDDTFSLLMGEKVEPRRNFIQENAKYVSNID 632


>gi|29830864|ref|NP_825498.1| DNA gyrase subunit B [Streptomyces avermitilis MA-4680]
 gi|29607977|dbj|BAC72033.1| putative DNA gyrase subunit B [Streptomyces avermitilis MA-4680]
          Length = 692

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 261/703 (37%), Positives = 387/703 (55%), Gaps = 30/703 (4%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           M D        +P    G+ E     GE+    A +N   + +YDAS+I +LEGL+ VR 
Sbjct: 1   MADSGNPN-ENIPSTDAGNGEANTSIGEV----AASNGEVTASYDASAITVLEGLDAVRK 55

Query: 61  RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           RPGMYIG T E+ LHHL  EV+DN++DE +AG+A+ I++++  +G + V+DNGRGIPV  
Sbjct: 56  RPGMYIGSTGERGLHHLVYEVVDNSVDEALAGHADTIDITILADGGVRVIDNGRGIPVGI 115

Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
            P    K  LE++LT LHAGGKF    Y +SGGLHGVG+SVVNALS ++ V V      +
Sbjct: 116 VP-SEGKPALEVVLTVLHAGGKFGGGGYAVSGGLHGVGVSVVNALSSKVSVEVKTDGFRW 174

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
           +Q++  G+P +PL + E   ++ GT +TF  D  IF     +    L +  Q  A+L+  
Sbjct: 175 TQEYKMGVPTAPLSQNEAT-DETGTSVTFWADADIFET-TEYSFETLSRRFQEMAFLNKG 232

Query: 241 VKTCWSCDKEI-----------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFT 289
           +    + ++E            A++    +   +++ GG+  +++     +         
Sbjct: 233 LTIKLTDERESAKATAGADEAGADEKDEVKTVTYHYEGGIVDFVKYLNSRKGDAVHPTVI 292

Query: 290 GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
               +      ++E A+ W       + S+ N I T EGGTHE G R ALT  I KYA  
Sbjct: 293 DLEAEDRDKSLSLEVAMQWNSGYTEGVYSFANIIHTHEGGTHEEGFRAALTSLINKYARD 352

Query: 349 TQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
            +   ++  ++  DD+      I+SV + EP+F GQTKTKL + +A+  V+ A+ +  + 
Sbjct: 353 KKLLREKDDNLTGDDIREGLTAIISVKLSEPQFEGQTKTKLGNTEAKTFVQKAVYEHLND 412

Query: 407 YLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTE 465
           +L +NP EA  ++   I+ +  R+  RK R++ R+   +    LPGKL+DC  N     E
Sbjct: 413 WLDRNPNEAADIIRKSIQAATARVAARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCE 472

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
           +FIVEGDSAGGSAK  RN   QA+LP+RGKILNV  A  +KI  NQ+I  L+ A G    
Sbjct: 473 IFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEKARIDKILQNQEIQALISAFGTGVH 532

Query: 526 SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG 585
             +  E LRY K+I+M DADVDG HI +LLLTF ++ M  L+E  H+FL  PPL+++  G
Sbjct: 533 EDFDIEKLRYHKIILMADADVDGQHINTLLLTFLFRFMRPLVEAGHVFLSRPPLYKLKWG 592

Query: 586 TKSV-YAHDEEHKQKILEEFKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLR 642
                YA+ +  +  ++E  ++ GK   +  I RFKGLGEM A +L+ T MD   R L +
Sbjct: 593 RDDFEYAYSDRERDALIELGRQAGKRVREDSIQRFKGLGEMNAEELRITTMDQEHRVLGQ 652

Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           V ++          D  + LMG   + R  FIQ  A  +  + 
Sbjct: 653 VTLDD----AAQADDLFSVLMGEDVEARRAFIQRNAKDVRFLD 691


>gi|323343849|ref|ZP_08084076.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella oralis
           ATCC 33269]
 gi|323095668|gb|EFZ38242.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella oralis
           ATCC 33269]
          Length = 672

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 263/666 (39%), Positives = 388/666 (58%), Gaps = 30/666 (4%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           Q+  +NY AS+I++LEGLE VR RP MYIG   EK LHHL +E +DN++DE +AGY   I
Sbjct: 20  QNNENNYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLVNETVDNSIDEAMAGYCTDI 79

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           EV+++ +  +TV DNGRGIPV+ H K    S LE+++T LHAGGKFD  +Y++SGGLHGV
Sbjct: 80  EVTINEDESITVQDNGRGIPVDEHKKLHK-SALEVVMTVLHAGGKFDKGSYKVSGGLHGV 138

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+S VNALS  +   V R   I+ Q++ +G PL P++      +KRGTR  F PD  IF 
Sbjct: 139 GVSCVNALSSHMLSQVFRDGKIYQQEYEKGKPLYPVKVMG-TTDKRGTRQQFWPDKTIFT 197

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               +    + +  +  AYL+  +K   +  +   E  G P  E F+   GLK +++   
Sbjct: 198 TIH-YQWDIIARRMRELAYLNAGIKITLTDLRANEE--GKPRVEVFHAKDGLKEFVRYVD 254

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            +R+ +  ++   KTEK+G     +E AI +  +    I SY N I T EGGTH SG R 
Sbjct: 255 RHRTHLFDDVIYLKTEKQGIP---IEVAIMYNTDYSENIHSYVNNINTIEGGTHLSGFRT 311

Query: 337 ALTRGIKKYAEL------TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           ALTR +K YA+          K  I I  +D       ++S+ + EP+F GQTKTKL + 
Sbjct: 312 ALTRVLKAYADNDPVISKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNS 371

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRL 449
           +    V+ A+ +   +YL ++P EA K+ E V+  +  R+  RK RE  ++   +    L
Sbjct: 372 EVSGAVQQAVGEALTNYLEEHPAEAKKICEKVVLAATARIAARKARESVQRKNFMSGGGL 431

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADCS       E+F+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV      ++  
Sbjct: 432 PGKLADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQWHRVFE 491

Query: 510 NQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            + +M+++Q++G R         +   + LRY+K+IIMTDADVDG+HI +L++T FY+ M
Sbjct: 492 AESVMNIIQSIGVRFGVEGEDDREANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRFM 551

Query: 564 YDLIEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEF--KKHGKGKIEISRFKGL 620
             +IE  HL++ +PPL++ + +   S Y + E+ +Q   +++         I   R+KGL
Sbjct: 552 PKVIEDGHLYIANPPLYKCSYKNKVSEYCYTEQQRQAFFDKYANGDEDAKSIHTQRYKGL 611

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GEM   QL ET MD   R L +V I     +  +  +  + LMG   + R +FI++ A++
Sbjct: 612 GEMNPDQLWETTMDPKSRLLKQVNIE----NAAEADEIFSMLMGDDVEPRREFIEQNATY 667

Query: 681 IDDVGT 686
             ++  
Sbjct: 668 A-NIDA 672


>gi|269837196|ref|YP_003319424.1| DNA gyrase, B subunit [Sphaerobacter thermophilus DSM 20745]
 gi|269786459|gb|ACZ38602.1| DNA gyrase, B subunit [Sphaerobacter thermophilus DSM 20745]
          Length = 638

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 260/647 (40%), Positives = 385/647 (59%), Gaps = 23/647 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YDASSI++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AGY + I+V++  
Sbjct: 9   YDASSIQVLEGLEAVRRRPGMYIGTTDIRGLHHLVYEIVDNSVDEALAGYCDRIDVTIHP 68

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +  +TVVDNGRGIPV+ HPK   KS LE+I+T LHAGGKF    Y++SGGLHGVG SVVN
Sbjct: 69  DSAVTVVDNGRGIPVDVHPKL-GKSALEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVN 127

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222
           ALS+ + V V +   ++ Q++ RG P++P+E+  +V  ++ GT+ TF+PD  IF     +
Sbjct: 128 ALSEWVVVEVRKDGVLYRQRYERGRPVTPVEQVGEVGPDEHGTKTTFKPDATIFESLN-Y 186

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L++  +  AYL+  ++  +  ++   E         FYF GG+ ++++     R +
Sbjct: 187 NFDTLMQRFREIAYLTKGLQISFRDERTDRE-------MSFYFDGGIVSFVRHLNRRRQV 239

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRG 341
           +    F+   E  G     +E A+ + +       ++ N I T +GGTH +G + ALTR 
Sbjct: 240 LQPRPFSVSREVNGNL---IEVALQYNDGVAESTYTFANNINTIDGGTHLTGFKAALTRT 296

Query: 342 IKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  YA      +    ++  +D+      I+SV + EP+F GQTK +L + +    V++ 
Sbjct: 297 INDYARRAGFLKETDENLSGEDVREGLTAIVSVKLPEPQFEGQTKGRLGNAEVAGQVQSV 356

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + D    YL +NP  A ++++  +  +  R   RK RE V RK A+    LPGKLADC +
Sbjct: 357 VNDALATYLNENPQAARRIVDKCVTAARAREAARKARELVQRKGALDTFSLPGKLADCQE 416

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 EL+IVEGDSAGGSAKQ R+R  QAVLPLRGKILNV  A  +++  N++I  L+ 
Sbjct: 417 RDPARAELYIVEGDSAGGSAKQGRDRRFQAVLPLRGKILNVEKARLDRMLQNEEIRALIT 476

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG     Q+    LRY ++I+MTDADVDGAHI +LLLTFF++ +  LI    L++  PP
Sbjct: 477 ALGTSIGDQFDPSKLRYHRIILMTDADVDGAHIRTLLLTFFFRHLESLIVDGRLYIAQPP 536

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+R+  G +  Y + +  + +I+     +     EI R+KGLGEM   QL ET MD   R
Sbjct: 537 LYRLQSGKEIHYVYSDAQRDEIIAAGGPN--KTWEIVRYKGLGEMNPEQLWETTMDPENR 594

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           TLL+V +   +       ++ + LMG+    R +FIQ  A  + ++ 
Sbjct: 595 TLLQVTLEDAVR----ADETFDMLMGSAVPPRRRFIQMHAREVQNLD 637


>gi|224532514|ref|ZP_03673139.1| DNA gyrase, B subunit [Borrelia burgdorferi WI91-23]
 gi|224512586|gb|EEF82962.1| DNA gyrase, B subunit [Borrelia burgdorferi WI91-23]
 gi|312149421|gb|ADQ29492.1| DNA gyrase, B subunit [Borrelia burgdorferi N40]
          Length = 634

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 243/647 (37%), Positives = 369/647 (57%), Gaps = 19/647 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY AS+I++L+GLE VR RPGMYIG      LHHL  EV+DN++DE +AG+ + I+V ++
Sbjct: 2   NYVASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLVYEVVDNSIDEALAGFCDRIDVIIN 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV+DNGRGIP + H +    S LE++LT LH+GGKF+  TY++SGGLHGVGISVV
Sbjct: 62  LDNTITVIDNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L V V R   IF Q FS+G+P S +E   +     GT++TF  D +IF     +
Sbjct: 121 NALSSFLEVYVNRDGKIFRQTFSKGVPTSKVEVVGESS-VTGTKVTFLADSEIFETL-DY 178

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L K  +  A+L+ ++       +   EK        FYF GG+K+++     +   
Sbjct: 179 NFDVLEKRLKELAFLNDKIYISIEDKRIGKEKSSK-----FYFEGGIKSFVDYLTNDSKA 233

Query: 283 ISSEIFTGKTE-KKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
             SE +              ++W  ++ +    I S+ N I T EGGTH  G R  LT+ 
Sbjct: 234 FQSEPYYIDGFINDVIVNVGLKWTESYSDN---ILSFVNNINTREGGTHVMGFRSGLTKA 290

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + +  + ++   K   ++  DD       ++SV + EP+F GQTK+KL + + ++ VE  
Sbjct: 291 MNEAFKNSKISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIRKIVEVV 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458
           + +     +  NP+E   +L   I+ +  R   RK R    +K A   L LPGKLADC+ 
Sbjct: 351 VYEHLLEIINLNPLEIDTILGKAIKAARAREAARKARESERKKNAFESLALPGKLADCAS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E++IVEGDSAGGSAK  RNR  QA+LPL GK+LNV     +K+  N +++ ++ 
Sbjct: 411 KNPLEREIYIVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           +LG      +    LRY K+IIM DADVDG+HI +LLL FF++ M DLIE  ++++  PP
Sbjct: 471 SLGAGVGKTFDITKLRYHKIIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYIYIAMPP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L++I    +  Y ++E+ K+K L+  +   +  I + R+KGLGEM  +QL ET MD  +R
Sbjct: 531 LYKIKYDNRIYYFYEEKEKEKFLDSIETKNRNSISLQRYKGLGEMNPTQLWETTMDPARR 590

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +  + I+  +    + +     LMG   + R +FI++ A  + ++ 
Sbjct: 591 KMRLMNIDDAI----EAEKIFVTLMGDLVEPRKEFIEQNALNVINLD 633


>gi|310816655|ref|YP_003964619.1| DNA topoisomerase IV, B subunit [Ketogulonicigenium vulgare Y25]
 gi|308755390|gb|ADO43319.1| DNA topoisomerase IV, B subunit [Ketogulonicigenium vulgare Y25]
          Length = 654

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 334/654 (51%), Positives = 450/654 (68%), Gaps = 10/654 (1%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
             + +  + Y+A+SI +LEGLEPVR RPGMYIGGTDE+ALHH+ +E++DN+MDE +AG+A
Sbjct: 7   AGSGAQGNEYNAASIEVLEGLEPVRKRPGMYIGGTDERALHHMVAEILDNSMDEAVAGHA 66

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           N IEV L  +  +TV DNGRGIPV+ HPKFP+KS LE+IL TLHAGGKF N  Y  SGGL
Sbjct: 67  NRIEVELHEDYSVTVRDNGRGIPVDPHPKFPDKSALEVILCTLHAGGKFSNKAYSTSGGL 126

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           +GVG SVVNALSD + V VAR   ++ Q FSRG+P  P++K     N++GT +TF PD +
Sbjct: 127 NGVGSSVVNALSDLMRVEVARNRELYVQSFSRGVPQGPVQKVGAAPNRKGTSVTFHPDAE 186

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IFG       ARL KM +SKAYL   V+  W   K   +    P +  F FPGGL  YL 
Sbjct: 187 IFGS-LKLKPARLFKMVRSKAYLFSGVEIRW---KTAIDDGETPAEATFKFPGGLADYLA 242

Query: 275 TKLENRSLISSEIFTGK--TEKKGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHE 331
             +++    + + F GK   E+K    G+VEWAI W    +  I SY NT+ T EGGTHE
Sbjct: 243 DVMKDTQTYADKPFAGKVSFEEKFNVPGSVEWAINWSAMRDGFILSYTNTVPTPEGGTHE 302

Query: 332 SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           +G   A+ +G+K Y E   N++A  I  +DL+     +LS+FIREP F GQTK +L + +
Sbjct: 303 AGFWAAVLKGVKTYGERVNNRKAKDITREDLLTGGCALLSIFIREPSFVGQTKDRLSTEE 362

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           A + VE A+RD FD++L  +P  A ++L++++ R+EERLRRR+++E  RK+A ++LRLPG
Sbjct: 363 AAKWVELAVRDHFDNWLAADPKSAREILDFLVLRAEERLRRRQEKETQRKSATKRLRLPG 422

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL DCS  I   TELF+VEGDSAGGSAK AR+R  QA+LPLRGK+LNV  A + K+  NQ
Sbjct: 423 KLTDCSAKIRDNTELFLVEGDSAGGSAKGARSRETQAILPLRGKVLNVMGAAAGKLNQNQ 482

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++ D+ +ALG +  +++  EDLRY+++IIMTDADVDGAHIASLL+TFF+ +M  LIE+ H
Sbjct: 483 ELSDICEALGVQMGAKFNTEDLRYQRIIIMTDADVDGAHIASLLMTFFFTQMRPLIEKGH 542

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           LFL  PPL+R+TQG   +Y  D+  K+  L++    G+GKI++ RFKGLGEM A  LKET
Sbjct: 543 LFLACPPLYRLTQGANRLYVADDAEKEYWLQK-GLGGRGKIDVQRFKGLGEMDAKDLKET 601

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   R L+RV IN D     +T D + +LMG K + RF++IQE A F++++ 
Sbjct: 602 TMDPKTRKLIRVTINDDE--PGETSDLVERLMGKKPELRFQYIQENARFVEELD 653


>gi|206895598|ref|YP_002246982.1| DNA gyrase, B subunit [Coprothermobacter proteolyticus DSM 5265]
 gi|206738215|gb|ACI17293.1| DNA gyrase, B subunit [Coprothermobacter proteolyticus DSM 5265]
          Length = 637

 Score =  606 bits (1561), Expect = e-171,   Method: Composition-based stats.
 Identities = 243/657 (36%), Positives = 361/657 (54%), Gaps = 27/657 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
                 + NY A  I++L  LE VR RP MYIG TD+  LHHL  E++DNA+DE +AG+ 
Sbjct: 1   MEKSLKTKNYGAEQIKVLGDLEGVRKRPAMYIGSTDKNGLHHLIWEIVDNAIDEAMAGFC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I+V L  +G + V DNGRGIPVE HP+   + T+E++LT LHAGGKF    Y+ SGGL
Sbjct: 61  DHIKVVLYKDGSVLVEDNGRGIPVEIHPQ-EGRPTVEVVLTKLHAGGKFGGQAYKASGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPD 212
           HGVG+SVVNALS+ L +TV R  T++ Q++  G P++ +++           T + F+PD
Sbjct: 120 HGVGLSVVNALSEWLEITVKRDGTVYWQRYEFGKPVTEVKEIGQYDDTESSATIVQFKPD 179

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
             IF D   FD   + +  +  A+L+  V      +          E E F+F  GL   
Sbjct: 180 KSIFAD-TRFDYEVIRQRLRELAFLNSEVTIELQREGS--------EPEFFHFESGLAGL 230

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHE 331
           L+    +   I   +     ++       VE A  +  + +  I S+ N++ T +GGTH 
Sbjct: 231 LEEVANSSEKIIDVLRFSGAQQD----VQVEVAFTYVDDFDENIVSFVNSVRTVDGGTHV 286

Query: 332 SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            GLR A+++ + +        +  ++ SDD       +++V + EPEF GQTK KL S  
Sbjct: 287 QGLRSAISKTLAEVGRRKGLLKDNNVSSDDFRQGLRAVVAVRVPEPEFEGQTKGKLGSKY 346

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLP 450
            +  VE+ +   F+ YL         L++  +  +E R   ++ R  +  +  +    LP
Sbjct: 347 VRNIVEDVVSKAFESYLETQNDVTKTLIQRALASAEMRETFKRTREMMKNRLRVESTVLP 406

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL+DCS       EL IVEG+SAGGSAKQ R+R+ QAVLPLRGKILNV  A  +++ +N
Sbjct: 407 GKLSDCSSRDVEKRELLIVEGESAGGSAKQGRDRTIQAVLPLRGKILNVEKASWKRVLDN 466

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  L+ A+G      +    LRY K+IIMTDADVDGAHI +LLLTFF++ M  L+E+ 
Sbjct: 467 EEIQALIAAIGTGVGEHFNFAKLRYGKIIIMTDADVDGAHIRTLLLTFFFRMMRPLVEEG 526

Query: 571 HLFLISPPLFRI--TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           H+++  PPL++I   +    +Y + +E  Q  L E +       EI R+KGLGEM A QL
Sbjct: 527 HIYIAQPPLYKIERKKSKDIIYLYSDEDLQAFLREHEGEN---FEIQRYKGLGEMNAEQL 583

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            ET ++   R L  V +       +   +  + LMG K   R +FI   A+ + ++ 
Sbjct: 584 WETTLNPETRNLYMVTVED----AEKADELFSVLMGEKVQPRKEFIFANANLVKNLD 636


>gi|300778803|ref|ZP_07088661.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Chryseobacterium
           gleum ATCC 35910]
 gi|300504313|gb|EFK35453.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Chryseobacterium
           gleum ATCC 35910]
          Length = 644

 Score =  606 bits (1561), Expect = e-171,   Method: Composition-based stats.
 Identities = 251/656 (38%), Positives = 384/656 (58%), Gaps = 22/656 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           +   Y ASSI+ LEG+E VRMRP MYIG    + LHHL  EV+DN++DE +AGY + I V
Sbjct: 2   SQKQYTASSIQALEGMEHVRMRPSMYIGDVGVRGLHHLVYEVVDNSIDEALAGYCDTIFV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           S+     + V DNGRGIPV+ H K   KS LE+++T + AGGKFD  +Y++SGGLHGVG+
Sbjct: 62  SIKEGNGIEVSDNGRGIPVDFHEK-EQKSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           S VNALS+E+  TV R   ++ Q +SRG   + +E+      +RGT+  F+PD  IF + 
Sbjct: 121 SCVNALSNEMITTVYRDGNVYQQIYSRGKAQTGVEEIGH-SERRGTKQFFQPDDTIFTEL 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             ++   L    +  +YL+  +    + ++E  E       E F+  GGLK ++     N
Sbjct: 180 V-YNYDTLASRLRELSYLNKGITITLTDEREKLEDG-SFRSEVFHSEGGLKEFVAYIDGN 237

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVAL 338
           R  I   +   + E+       VE A+ +     E    Y N I T EGGTH +G R AL
Sbjct: 238 RESIMEHVIFMEGERDDIP---VEVAMRYNTSFNENLHSYVNNINTHEGGTHLAGFRRAL 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +KKYA+      K  + +  DD       ++SV + EP+F GQTKTKL + +    V
Sbjct: 295 TRTLKKYADDLGIPQKEKVEVTGDDFREGLTAVVSVKVMEPQFEGQTKTKLGNSEVSGAV 354

Query: 397 ENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           +  + +   ++L +NP EA ++++  V+     +  ++ +  V RK+ +    LPGKL+D
Sbjct: 355 DKIVGEMLTNFLEENPNEAKQIVQKVVLAAKARQAAKKAREMVQRKSPMGGSGLPGKLSD 414

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS      +E+F+VEGDSAGG+AKQ R+R  QA+LPLRGKILNV  +   K+ +N++I +
Sbjct: 415 CSSKDPAESEIFLVEGDSAGGTAKQGRDRHFQAILPLRGKILNVEKSMLHKVYDNEEIRN 474

Query: 516 LVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           +  ALG    ++   +      LRY K++IMTDAD+DG+HI++L+LTFF++ M +LIE  
Sbjct: 475 IYTALGVSVGTEEDSKALNLSKLRYHKIVIMTDADIDGSHISTLILTFFFRYMKELIENG 534

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPL+ + +G K VYA++E+ +++   E    GKG +E+ R+KGLGEM   QL E
Sbjct: 535 YIYIAQPPLYLLKKGNKKVYAYNEKEREEFTLEMSPDGKG-VEVQRYKGLGEMNPEQLWE 593

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           T ++   R L +V I+  +    +     + LMG +   R +FI++ A +   +  
Sbjct: 594 TTLNPEHRILKQVTIDNAV----EADSIFSMLMGDEVPPRREFIEKNAKYAK-IDA 644


>gi|163733481|ref|ZP_02140924.1| DNA topoisomerase IV, B subunit [Roseobacter litoralis Och 149]
 gi|161393269|gb|EDQ17595.1| DNA topoisomerase IV, B subunit [Roseobacter litoralis Och 149]
          Length = 652

 Score =  606 bits (1561), Expect = e-171,   Method: Composition-based stats.
 Identities = 341/646 (52%), Positives = 440/646 (68%), Gaps = 10/646 (1%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +YDASSI +LEGLEPVR RPGMYIGGTDE+ALHHL +EV+DN+MDE +AG+A  IEV L 
Sbjct: 13  DYDASSIEVLEGLEPVRKRPGMYIGGTDERALHHLVAEVLDNSMDEAVAGHATRIEVELH 72

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +T+ DNGRGIPV+ HPKFP+KS LE+IL TLHAGGKF    YE SGGLHGVG SVV
Sbjct: 73  EDYAVTIRDNGRGIPVDPHPKFPDKSALEVILCTLHAGGKFSGKAYETSGGLHGVGASVV 132

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALSD + V VAR   +F Q+FSRG+PL P+E+    +N+RGT +TF  D +IFG    F
Sbjct: 133 NALSDSMIVQVARNKQLFEQRFSRGLPLGPVEELGPTQNRRGTTVTFHADAEIFGA-HRF 191

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
             ARL    +SKAYL   V+  W   K        P++  F+FPGGL  YL+  L   + 
Sbjct: 192 KPARLFNSIRSKAYLFSGVEIRW---KSAISDGETPQEATFHFPGGLSDYLRETLGAATT 248

Query: 283 ISSEIFTG--KTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLRVALT 339
            +   F G    ++K    G VEWAI W    +  I SYCNT+ T EGGTH +G   A+ 
Sbjct: 249 YADNPFAGTVDFKEKFGEPGKVEWAINWTPSRDGFIQSYCNTVPTPEGGTHVAGFWAAIL 308

Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +GIK Y EL+  K+A  I  +DL      ++S FI EP F GQTK +L +  A +  E A
Sbjct: 309 KGIKAYGELSNTKKAAQITREDLTSGGCALVSCFIAEPAFVGQTKDRLSTEAAAKMTEGA 368

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
           +RD FD++L  +   A  +L++++ R+EERLRRR+++E  RK+A +KLRLPGKL DC+  
Sbjct: 369 VRDHFDNWLAADTKSAGAILDFLVLRAEERLRRRQEKETARKSATKKLRLPGKLTDCTSK 428

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
              GTELFIVEGDSAGGS K AR+R  QA+LPL+GKILNV  A S K+  N +I DL +A
Sbjct: 429 DRIGTELFIVEGDSAGGSGKGARDRKTQALLPLKGKILNVLGAASSKLGTNAEISDLCEA 488

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           LGC   +++  +DLRYEK+IIMTDADVDGAHIA+LL+TFF+ +M  +I+  HL+L  PPL
Sbjct: 489 LGCGMGTKFNLDDLRYEKIIIMTDADVDGAHIAALLMTFFFTQMRPMIDAGHLYLACPPL 548

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           FR+TQG K VY   EE K   LE+    GKGKI++SRFKGLGEM A  LKET MD   R 
Sbjct: 549 FRLTQGAKRVYCLTEEEKNDWLEK-GLGGKGKIDVSRFKGLGEMDAKDLKETTMDPTTRK 607

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           L+RV I++D+    +T D + +LMG K + RF++IQE A F++++ 
Sbjct: 608 LIRVSIDEDI--PGETGDLVERLMGKKPELRFQYIQENAKFVEELD 651


>gi|116491823|ref|YP_803558.1| DNA gyrase subunit B [Pediococcus pentosaceus ATCC 25745]
 gi|116101973|gb|ABJ67116.1| DNA gyrase subunit B [Pediococcus pentosaceus ATCC 25745]
          Length = 648

 Score =  606 bits (1561), Expect = e-171,   Method: Composition-based stats.
 Identities = 252/661 (38%), Positives = 362/661 (54%), Gaps = 21/661 (3%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
                     +  YDAS I++LEGLE VR RPGMYIG T  + LHHL  E+IDN +DE +
Sbjct: 2   ADEKETKAELAREYDASQIQVLEGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNGIDEAL 61

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AG+A+ I+V ++ +  +TV DNGRGIPV+   K   K  LE + T LHAGGKF    Y++
Sbjct: 62  AGFADKIDVIVEKDNSITVTDNGRGIPVDIQKK-TGKPALETVFTVLHAGGKFGGGGYKV 120

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRIT 208
           SGGLHGVG SVVNALS EL   V +   I+   F+ G   +P++        +  GT + 
Sbjct: 121 SGGLHGVGASVVNALSTELDARVMKDGKIYYIDFALGKVKTPMKTIGDTEHPDDHGTIVH 180

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F PDP IF +   +D   L    +  A+L+  ++      +        P +++F + GG
Sbjct: 181 FVPDPDIFQETTTYDINILKTRIRELAFLNKGLRITLKDMR-----PEKPTEDDFLYEGG 235

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEG 327
           ++ Y++   E + +I  E    +   KG    TVE A+ + E       ++ N I T EG
Sbjct: 236 IRHYVEYLNEGKEVIFPEPIYVEGVTKGI---TVEVAMQYIEGYQSKLLTFTNNIHTYEG 292

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTHE G + ALTR I  YA+      +    +  DD+      ++SV   +P+F GQTKT
Sbjct: 293 GTHEEGFKRALTRVINDYAKNNNILKENDDKLSGDDVREGLTAVVSVKHPDPQFEGQTKT 352

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAI 444
           KL + DA+  V     + F+ +L++NP  A ++++  ++        +R +    +K+ +
Sbjct: 353 KLGNSDARTAVNEVFAETFNKFLLENPKVARQIVDKGILAAKARVAAKRAREVTRKKSGL 412

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLAD +      +ELFIVEGDSAGGSAK  R+R  QA+LP+RGKILNV  A  
Sbjct: 413 ELNNLPGKLADNTSKDPSISELFIVEGDSAGGSAKSGRSRLTQAILPIRGKILNVEKATL 472

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           +++  N++I  L  ALG      +      Y K+IIMTDADVDGAHI +LLLT FY+ M 
Sbjct: 473 DRVLANEEIRSLFTALGTGFGEDFDVSKANYHKLIIMTDADVDGAHIRTLLLTLFYRYMR 532

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
            +I+   +++  PPL+++ QG    Y   +E  + +L +       K  I R+KGLGEM 
Sbjct: 533 PMIDAGFVYIAQPPLYQVRQGKMIQYIDSDEELETVLGQLSPS--PKPVIQRYKGLGEMD 590

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           A QL ET M+   R LLRV       +  D       LMG K + R KFI+E A F+ ++
Sbjct: 591 AEQLWETTMNPENRRLLRVSAEDADAASGD----FEMLMGDKVEPRRKFIEENAVFVKNL 646

Query: 685 G 685
            
Sbjct: 647 D 647


>gi|2338752|gb|AAB67237.1| DNA gyrase subunit B [Borrelia burgdorferi]
          Length = 634

 Score =  606 bits (1561), Expect = e-171,   Method: Composition-based stats.
 Identities = 244/647 (37%), Positives = 369/647 (57%), Gaps = 19/647 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY AS+I++L+GLE VR RPGMYIG      LHHL  EV+DN++DE +AG+ + I+V ++
Sbjct: 2   NYVASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLVYEVVDNSIDEALAGFCDRIDVIIN 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV+DNGRGIP + H +    S LE++LT LH+GGKF+  TY++SGGLHGVGISVV
Sbjct: 62  LDNTITVIDNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L V V R   IF Q FS+GIP S +E   +     GT++TF  D +IF     +
Sbjct: 121 NALSSFLEVYVNRDGKIFRQTFSKGIPTSKVEVVGESS-VTGTKVTFLADSEIFETL-DY 178

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L K  +  A+L+ ++       +   EK        FYF GG+K+++     +   
Sbjct: 179 NFDVLEKRLKELAFLNDKIYISIEDKRIGKEKSSK-----FYFEGGIKSFVDYLTNDSKA 233

Query: 283 ISSEIFTGKTE-KKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
             SE +              ++W  ++ +    I S+ N I T EGGTH  G R  LT+ 
Sbjct: 234 FQSEPYYIDGFINDVIVNVGLKWTESYSDN---ILSFVNNINTREGGTHVMGFRSGLTKA 290

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + +  + ++   K   ++  DD       ++SV + EP+F GQTK+KL + + ++ VE  
Sbjct: 291 MNEAFKNSKISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIRKIVEVV 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458
           + +     +  NP+E   +L   I+ +  R   RK R    +K A   L LPGKLADC+ 
Sbjct: 351 VYEHLLEIINLNPLEIDTILGKAIKAARAREAARKARESERKKNAFESLALPGKLADCTS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E++IVEGDSAGGSAK  RNR  QA+LPL GK+LNV     +K+  N +++ ++ 
Sbjct: 411 KNPLEREIYIVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           +LG      +    LRY K+IIM DADVDG+HI +LLL FF++ M DLIE  ++++  PP
Sbjct: 471 SLGAGVGKTFDITKLRYHKIIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYIYIAMPP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L++I    +  Y ++E+ K+K L+  +   +  I + R+KGLGEM  +QL ET MD  +R
Sbjct: 531 LYKIKYDNRIYYFYEEKEKEKFLDSIETKNRNSISLQRYKGLGEMNPTQLWETTMDPARR 590

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +  + I+  +    + +     LMG   + R +FI++ A  + ++ 
Sbjct: 591 KMRLMNIDDAI----EAEKIFVTLMGDLVEPRKEFIEQNALNVINLD 633


>gi|288958482|ref|YP_003448823.1| topoisomerase IV subunit B [Azospirillum sp. B510]
 gi|288910790|dbj|BAI72279.1| topoisomerase IV subunit B [Azospirillum sp. B510]
          Length = 662

 Score =  606 bits (1561), Expect = e-171,   Method: Composition-based stats.
 Identities = 355/659 (53%), Positives = 471/659 (71%), Gaps = 13/659 (1%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
                +D+Y A  I +LEGLEPVR RPGMYIGGTD++ALHHL +EV+DNAMDE +AG+A+
Sbjct: 7   NTAPKADSYSAQDIEVLEGLEPVRRRPGMYIGGTDDRALHHLVAEVLDNAMDEAVAGHAS 66

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I++ L  +G + V DNGRGIP+++HPK+P KS LE+I+TTLH+GGKF N  Y+ SGGLH
Sbjct: 67  RIDLELAADGTVMVRDNGRGIPIDDHPKYPGKSALEVIMTTLHSGGKFSNKVYQTSGGLH 126

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD L V +AR+  +  Q++SRG+P  PL  +  V N+RGT I F  DP+I
Sbjct: 127 GVGLSVVNALSDRLTVEIAREKQLHVQEYSRGLPQGPLAHRGNV-NRRGTTIRFHADPEI 185

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE-IAEKYGIPEKEEFYFPGGLKTYLQ 274
           FG+ A F+  RL ++ +SKAYL   V+  W+CD   ++     P  E  +FPGGL+ YL 
Sbjct: 186 FGETAHFEPHRLYRLARSKAYLYRGVEIRWACDPSLLSVDATTPASETLHFPGGLQDYLN 245

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333
             L++R  ++   F G  +     +G VEWA+AW +++   +  YCNT+ T  GGTHE+G
Sbjct: 246 AALKDRKTLTPSPFAGALDFPN-GQGRVEWAVAWPDDDEGFSHTYCNTVPTPLGGTHEAG 304

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
           LR ALTRG+K Y ELT NKRA  + +DD+M  A  +LSVFIREP F GQTK KLV+ +AQ
Sbjct: 305 LRTALTRGLKAYGELTSNKRAGQVTADDVMGDACVLLSVFIREPHFQGQTKEKLVTAEAQ 364

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
           R VE A++D FDH+L  +P  A  LLE +IE++EER RR++ +E+ RK+A R+LRLPGKL
Sbjct: 365 RLVETAVKDHFDHWLSGDPQSANGLLERLIEKAEERARRKQSKEMTRKSATRRLRLPGKL 424

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS+N   GTELF+VEGDSAGGSAKQAR R  QA+LPLRGKILNVASA  +K++ NQ++
Sbjct: 425 ADCSRNSPEGTELFLVEGDSAGGSAKQARQRETQAILPLRGKILNVASASVDKMKANQEL 484

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            DL QALGC     +  + LRYE+VIIMTDADVDGAHIASLL+TFFY+EM  LI++ HL+
Sbjct: 485 NDLTQALGCGIGKDFSTDKLRYERVIIMTDADVDGAHIASLLMTFFYREMPGLIQEGHLY 544

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           L  PPL+R++ G K VYA D+ HK ++L +  K    K +ISRFKGLGEM+ +QL++T M
Sbjct: 545 LALPPLYRLSHGNKQVYARDDAHKDELLAKMFK--GKKPDISRFKGLGEMMPAQLRDTTM 602

Query: 634 DANKRTLLRVEINKDLNSLKD-----TQDSINKLMGTKADERFKFIQERASFI--DDVG 685
           D +KR+LLRV +    +  +      T+  +  LMG + + RFKFIQ+ A F+  DD+ 
Sbjct: 603 DPSKRSLLRVVVPNAADPEEKPECERTRSLVEDLMGKRPELRFKFIQDNAKFVKADDID 661


>gi|319949427|ref|ZP_08023488.1| DNA gyrase subunit B [Dietzia cinnamea P4]
 gi|319436889|gb|EFV91948.1| DNA gyrase subunit B [Dietzia cinnamea P4]
          Length = 705

 Score =  606 bits (1561), Expect = e-171,   Method: Composition-based stats.
 Identities = 250/715 (34%), Positives = 376/715 (52%), Gaps = 73/715 (10%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
           D+ + A+   +  Y ASSI +LEGLE VRMRPGMYIG T  + LHHL  EV+DN++DE +
Sbjct: 3   DARSTADNGGAKEYGASSITVLEGLEAVRMRPGMYIGSTGPRGLHHLIWEVVDNSVDEAM 62

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AG+A  ++V+L  +G + V+D+GRGIPVE H       T+++++T LHAGGKFD+ +Y +
Sbjct: 63  AGHATGVKVTLLEDGGVEVIDDGRGIPVEMHE--SGMPTVQVVMTQLHAGGKFDSDSYAV 120

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVGISVVNALS  + V + R   ++ Q F   +P   ++         GT++ F 
Sbjct: 121 SGGLHGVGISVVNALSTRVEVQIKRDGRLWKQDFDMAVPAELVDA--GPAEGTGTKVRFW 178

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI------------- 257
            DP IF     +D   + +  Q  A+L+  +    +  +  AEK                
Sbjct: 179 ADPSIFETT-EYDFDIVARRLQEMAFLNKGLTITLTDRRPRAEKAAELDAIADSEGVGPD 237

Query: 258 --------------------------------------PEKEEFYFPGGLKTYLQTKLEN 279
                                                   K  F++P GLK Y++   ++
Sbjct: 238 SAPGSDEGSDLASAVDAEQVFVEGAGDGAEAAEPEKIRERKRTFHYPDGLKDYVKAINKS 297

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   I   + +  G     VE A+ W       + ++ NTI T EGGTHE G R AL
Sbjct: 298 KTAIHPTILYFEGKGTGH---EVEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAAL 354

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           T  + KYA   +   ++  ++  DD+      ++S  I +P+F GQTKTKL + + +  V
Sbjct: 355 TSLVNKYARDKKLIKEKDPNLTGDDIREGLAAVISAKIADPQFEGQTKTKLGNTEVKGFV 414

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLAD 455
           +  + +   H+   NP EA  ++   I  S+ R+  RK RE+  RK+A     LPGKLAD
Sbjct: 415 QRQVAEHVGHWFEANPAEAKVIVNKAIASSQARVAARKAREMVRRKSATDIGGLPGKLAD 474

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C       +EL+IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  +  +K+  N ++  
Sbjct: 475 CRSKDPSKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKSRIDKVLKNAEVQA 534

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ ALG     ++  + LRY K+++M DADVDG HIA+LLLT  ++ M  L+E  +++L 
Sbjct: 535 IITALGTGIHEEFDIDKLRYHKIVLMADADVDGQHIATLLLTLIFRFMKPLVENGYVYLA 594

Query: 576 SPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIE----ISRFKGLGEMLASQLKE 630
            PPL+++     +  +A+ +  + ++L +     K KI     I R+KGLGEM   +L E
Sbjct: 595 QPPLYKLKWSKGEPDFAYSDRERDELL-KIGLENKRKINVDDGIQRYKGLGEMNPKELWE 653

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T MD + RTL +V +           +  + LMG   D R  FI   A  +  + 
Sbjct: 654 TTMDPSVRTLRQVTLED----AAAADELFSILMGEDVDARRNFITRNARDVRFLD 704


>gi|328945965|gb|EGG40112.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           sanguinis SK1087]
          Length = 649

 Score =  606 bits (1561), Expect = e-171,   Method: Composition-based stats.
 Identities = 258/658 (39%), Positives = 380/658 (57%), Gaps = 24/658 (3%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +        +  YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +A
Sbjct: 2   TEEKQQDIQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+A+ I+V ++ +  +TVVDNGRGIPV+   K   +  +E + T LHAGGKF    Y++S
Sbjct: 62  GFASHIQVFIEKDNSITVVDNGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVS 120

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG SVVNALS +L V V +   I  Q++SRG  ++ LE   +  ++ GT + F P
Sbjct: 121 GGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEYSRGQVVADLEIIGET-DRTGTTVHFTP 179

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           DP+IF +   FD  +L K  Q  A+L+  ++   +  ++  E     + +++++ GG+ +
Sbjct: 180 DPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKRDGIE-----QVKDYHYEGGIAS 234

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           Y+Q   EN+ +I         E       TVE A+ +       + S+ N I T EGGTH
Sbjct: 235 YVQYINENKDVIFETPIYTDGEMDDI---TVEVAMQYTTGYHETVMSFANNIHTHEGGTH 291

Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           E G R ALTR I  YA+  +  +    ++  +D+      ++SV    P+F GQTKTKL 
Sbjct: 292 EQGFRTALTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLG 351

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447
           + +  +       + F  +L++NP  A K++E  I  S+ R+  ++ RE   +K+ +   
Sbjct: 352 NSEVVKITNRLFSEAFSDFLLENPAVARKIVEKGILASKARIAAKRAREVTRKKSGLEIS 411

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADCS N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI
Sbjct: 412 NLPGKLADCSSNDPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKI 471

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N++I  L  A+G    + +     RY+K++IMTDADVDGAHI +LLLT  Y+ M  ++
Sbjct: 472 LANEEIRSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVL 531

Query: 568 EQKHLFLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGE 622
           E   +++  PP++ +  G++   Y       EE  Q  L  +   G+ K  I R+KGLGE
Sbjct: 532 EAGFVYIAQPPIYGVKVGSEVKEYIQPGANQEEELQAALARYS-EGRSKPTIQRYKGLGE 590

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           M   QL ET M+   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 591 MDDHQLWETTMNPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 644


>gi|257437729|ref|ZP_05613484.1| DNA gyrase, B subunit [Faecalibacterium prausnitzii A2-165]
 gi|257200036|gb|EEU98320.1| DNA gyrase, B subunit [Faecalibacterium prausnitzii A2-165]
          Length = 664

 Score =  606 bits (1561), Expect = e-171,   Method: Composition-based stats.
 Identities = 243/671 (36%), Positives = 371/671 (55%), Gaps = 31/671 (4%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +      +    Y+AS I++L+GLE VR RPGMYIG T E+ LHHL  E++DNA+DE +A
Sbjct: 7   TSTNVETATDHEYNASEIQVLKGLEAVRKRPGMYIGSTGERGLHHLVYEIVDNAIDEALA 66

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF--DNSTYE 149
           GY N IEV +  N  + V DNGRGIPV+          + ++ T LHAGGKF  +NS Y+
Sbjct: 67  GYCNHIEVKILKNNIIQVTDNGRGIPVDIQA-DTGLPAVTVVYTILHAGGKFGGENSGYK 125

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRIT 208
           ++GGLHGVG SVVNA S+ L V V R    + Q F RG P  PL+    V     GTR+T
Sbjct: 126 VAGGLHGVGASVVNACSEWLTVNVRRDGHEYEQTFRRGDPDGPLKCLGTVAEGVTGTRVT 185

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE--------IAEKYGIPEK 260
           F+PDP++F D   ++   L K  + +++L+  VK   + ++E          E       
Sbjct: 186 FKPDPEMFKDTTVYNFETLEKRLREESFLNAGVKITLTDERELYTPVLEDGQEGDPCYRT 245

Query: 261 EEFYFPGGLKTYLQTKLENR--SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           E   + GG+K+++    E R   ++   +   K + +   RG  E A+ +       + S
Sbjct: 246 EVMCYEGGIKSFVTYLGEKRNLEVLHPNVIYLKGQTE---RGMAEIALQYNSSYNELLLS 302

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N + T +GGTHE G R +LTR    Y         +  ++   D+    + ++SV ++
Sbjct: 303 FANNVNTPDGGTHEEGFRTSLTRVFNDYGRSHGLLKDKDENLSGSDVREGLICVISVKLQ 362

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRK 434
           E EF GQTK KL + + +  V N +      +  +NP  A  +  +           ++ 
Sbjct: 363 EAEFEGQTKAKLGNTEIRTLVSNMVYTKLMEFFEENPGVAKAIFEKATQAARARAAAKKA 422

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +  V RK+A+   R+PGKLADC +     TE+FIVEGDSAGGSAK  R+ + QA+LPL G
Sbjct: 423 RELVRRKSALETSRMPGKLADCREKDPTRTEIFIVEGDSAGGSAKMGRDSAIQAILPLWG 482

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           K+LNV  A +++I  N ++M +V ALGC    ++    LRY+KV IM DADVDG+HI +L
Sbjct: 483 KMLNVEKARADRIYGNDKLMPVVLALGCGIGEEFDISKLRYDKVFIMADADVDGSHICTL 542

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M  LIEQ H+++  PPLF++ +G    YA+++     + +E         ++
Sbjct: 543 MLTFFFRYMRPLIEQGHVYVAQPPLFKVQKGNTIKYAYNDAEMAILSQEMP-----GAKV 597

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
           +R+KGLGEM   QL ET M+ + R ++++ I       +   ++   LMG + + R +FI
Sbjct: 598 NRYKGLGEMNPEQLWETTMNPDNRVIVQITIED----AEKADEAFTILMGDQVEPRRRFI 653

Query: 675 QERASFIDDVG 685
           +  A +   + 
Sbjct: 654 ETNAQYAK-LD 663


>gi|86750095|ref|YP_486591.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris HaA2]
 gi|86573123|gb|ABD07680.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris HaA2]
          Length = 684

 Score =  606 bits (1561), Expect = e-171,   Method: Composition-based stats.
 Identities = 381/683 (55%), Positives = 495/683 (72%), Gaps = 9/683 (1%)

Query: 8   LFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIG 67
           L ++   +              P + A     A   Y A+ I +LEGLEPVR RPGMYIG
Sbjct: 5   LKASSKSKPASDLFGAAAKSGAPRAAAKPTGGAEAGYTAADIEVLEGLEPVRRRPGMYIG 64

Query: 68  GTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNK 127
           GTDEKALHHLF+EVIDN+MDE +AG+A  IEV L  +G+LTV DNGRGIPV+ HPKFP K
Sbjct: 65  GTDEKALHHLFAEVIDNSMDEALAGHATFIEVELGADGYLTVSDNGRGIPVDPHPKFPKK 124

Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187
           S LE+I+ TLHAGGKFD+  YE SGGLHGVG+SVVNALS  L V VAR   ++   F+RG
Sbjct: 125 SALEVIMCTLHAGGKFDSKVYETSGGLHGVGVSVVNALSSLLEVEVARGQQLYRMVFARG 184

Query: 188 IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247
           IP   LE   K+ N+RGTR+ F+PD  IFG KA F   RL KM +SKAYL G V+  W C
Sbjct: 185 IPQGKLESLGKINNRRGTRVRFKPDTDIFGAKAAFKPQRLFKMARSKAYLFGGVEIRWKC 244

Query: 248 DKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
           D E+ +    +P ++ F+FPGGLK YL   +   +L+  +IF+GK+ + G H G  EWA+
Sbjct: 245 DPELLKGVEDVPPEDTFHFPGGLKDYLGAAIHADTLVHPDIFSGKSGRNGAH-GACEWAV 303

Query: 307 AWC-EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMI 364
           AW  + +  ++SYCNT+ T +GGTHESG+R AL RG+K +AE     KRA SI S+D+M+
Sbjct: 304 AWTADADGFLSSYCNTVPTPDGGTHESGMRSALLRGLKDHAERVGQGKRASSITSEDVMV 363

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            A  +LSVF+REPEF GQTK +L + +AQ+ VE A++DPFDH+L  NP++A KLL++V+E
Sbjct: 364 GAAVMLSVFVREPEFQGQTKDRLATAEAQKIVEQAIKDPFDHWLSGNPVQANKLLDFVVE 423

Query: 425 RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           R+EERLRRR+++E++RKTA++KLRLPGKLADC+   A G+ELFIVEGDSAGGSAKQAR+R
Sbjct: 424 RAEERLRRRQEKEISRKTAVKKLRLPGKLADCTNTAAEGSELFIVEGDSAGGSAKQARDR 483

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QAVLPLRGKILNVASA  +K+  N Q+ DL+QA+GC T   YREEDLRY ++IIMTDA
Sbjct: 484 KTQAVLPLRGKILNVASATKDKVVANAQLSDLMQAIGCGTGVNYREEDLRYARIIIMTDA 543

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           DVDGAHIASLL+TFFY++M  LI++ HL+L  PPL+R+T G K+VYA D+ HK ++L++ 
Sbjct: 544 DVDGAHIASLLITFFYRQMPKLIDEGHLYLAVPPLYRLTHGAKTVYARDDAHKDELLKK- 602

Query: 605 KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMG 664
           + +   K+++ RFKGLGEM+ +QLKET MD  +RTLLRV +         T DS+ +LMG
Sbjct: 603 EFNANAKVDVGRFKGLGEMMPAQLKETTMDPARRTLLRVSLLDIDRDG--TADSVERLMG 660

Query: 665 TKADERFKFIQERASFIDD--VG 685
           TKA+ RF FI ++A F  +  + 
Sbjct: 661 TKAEARFAFISDKAEFASEDLLD 683


>gi|195942016|ref|ZP_03087398.1| DNA gyrase, subunit B (gyrB) [Borrelia burgdorferi 80a]
 gi|216264581|ref|ZP_03436573.1| DNA gyrase, B subunit [Borrelia burgdorferi 156a]
 gi|218249329|ref|YP_002374947.1| DNA gyrase, B subunit [Borrelia burgdorferi ZS7]
 gi|221218016|ref|ZP_03589482.1| DNA gyrase, B subunit [Borrelia burgdorferi 72a]
 gi|223888682|ref|ZP_03623273.1| DNA gyrase, B subunit [Borrelia burgdorferi 64b]
 gi|224533655|ref|ZP_03674244.1| DNA gyrase, B subunit [Borrelia burgdorferi CA-11.2a]
 gi|225548740|ref|ZP_03769787.1| DNA gyrase, B subunit [Borrelia burgdorferi 94a]
 gi|225549469|ref|ZP_03770435.1| DNA gyrase, B subunit [Borrelia burgdorferi 118a]
 gi|226321066|ref|ZP_03796608.1| DNA gyrase, B subunit [Borrelia burgdorferi 29805]
 gi|226321745|ref|ZP_03797271.1| DNA gyrase, B subunit [Borrelia burgdorferi Bol26]
 gi|215981054|gb|EEC21861.1| DNA gyrase, B subunit [Borrelia burgdorferi 156a]
 gi|218164517|gb|ACK74578.1| DNA gyrase, B subunit [Borrelia burgdorferi ZS7]
 gi|221191964|gb|EEE18185.1| DNA gyrase, B subunit [Borrelia burgdorferi 72a]
 gi|223885498|gb|EEF56597.1| DNA gyrase, B subunit [Borrelia burgdorferi 64b]
 gi|224513328|gb|EEF83690.1| DNA gyrase, B subunit [Borrelia burgdorferi CA-11.2a]
 gi|225369746|gb|EEG99193.1| DNA gyrase, B subunit [Borrelia burgdorferi 118a]
 gi|225370770|gb|EEH00206.1| DNA gyrase, B subunit [Borrelia burgdorferi 94a]
 gi|226232934|gb|EEH31687.1| DNA gyrase, B subunit [Borrelia burgdorferi Bol26]
 gi|226233476|gb|EEH32215.1| DNA gyrase, B subunit [Borrelia burgdorferi 29805]
 gi|312148462|gb|ADQ31121.1| DNA gyrase, B subunit [Borrelia burgdorferi JD1]
          Length = 634

 Score =  606 bits (1561), Expect = e-171,   Method: Composition-based stats.
 Identities = 244/647 (37%), Positives = 369/647 (57%), Gaps = 19/647 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY AS+I++L+GLE VR RPGMYIG      LHHL  EV+DN++DE +AG+ + I+V ++
Sbjct: 2   NYVASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLVYEVVDNSIDEALAGFCDRIDVIIN 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV+DNGRGIP + H +    S LE++LT LH+GGKF+  TY++SGGLHGVGISVV
Sbjct: 62  LDNTITVIDNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L V V R   IF Q FS+GIP S +E   +     GT++TF  D +IF     +
Sbjct: 121 NALSSFLEVYVNRDGKIFRQTFSKGIPTSKVEVVGESS-VTGTKVTFLADSEIFETL-DY 178

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L K  +  A+L+ ++       +   EK        FYF GG+K+++     +   
Sbjct: 179 NFDVLEKRLKELAFLNDKIYISIEDKRIGKEKSSK-----FYFEGGIKSFVDYLTNDSKA 233

Query: 283 ISSEIFTGKTE-KKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
             SE +              ++W  ++ +    I S+ N I T EGGTH  G R  LT+ 
Sbjct: 234 FQSEPYYIDGFINDVIVNVGLKWTESYSDN---ILSFVNNINTREGGTHVMGFRSGLTKA 290

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + +  + ++   K   ++  DD       ++SV + EP+F GQTK+KL + + ++ VE  
Sbjct: 291 MNEAFKNSKISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIRKIVEVV 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458
           + +     +  NP+E   +L   I+ +  R   RK R    +K A   L LPGKLADC+ 
Sbjct: 351 VYEHLLEIINLNPLEIDTILGKAIKAARAREAARKARESERKKNAFESLALPGKLADCAS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E++IVEGDSAGGSAK  RNR  QA+LPL GK+LNV     +K+  N +++ ++ 
Sbjct: 411 KNPLEREIYIVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           +LG      +    LRY K+IIM DADVDG+HI +LLL FF++ M DLIE  ++++  PP
Sbjct: 471 SLGAGVGKTFDITKLRYHKIIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYIYIAMPP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L++I    +  Y ++E+ K+K L+  +   +  I + R+KGLGEM  +QL ET MD  +R
Sbjct: 531 LYKIKYDNRIYYFYEEKEKEKFLDSIETKNRNSISLQRYKGLGEMNPTQLWETTMDPARR 590

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +  + I+  +    + +     LMG   + R +FI++ A  + ++ 
Sbjct: 591 KMRLMNIDDAI----EAEKIFVTLMGDLVEPRKEFIEQNALNVINLD 633


>gi|154249648|ref|YP_001410473.1| DNA gyrase, B subunit [Fervidobacterium nodosum Rt17-B1]
 gi|154153584|gb|ABS60816.1| DNA gyrase, B subunit [Fervidobacterium nodosum Rt17-B1]
          Length = 650

 Score =  606 bits (1561), Expect = e-171,   Method: Composition-based stats.
 Identities = 238/661 (36%), Positives = 375/661 (56%), Gaps = 23/661 (3%)

Query: 30  PDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEV 89
             +    N + + +Y+A +I++L+GLEPVR RPGMYIG T +  LHHL  E++DN++DE 
Sbjct: 7   NPTTNVNNINEASDYNAQNIQVLKGLEPVRQRPGMYIGSTGKNGLHHLVYEIVDNSIDEA 66

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
           + G+ + I+V++  +G + V DNGRGIPV+ HP+    S LE+++TTLHAGGKF  S+Y+
Sbjct: 67  LQGFCDTIKVTIKSDGSVEVEDNGRGIPVDIHPE-TGTSALEVVMTTLHAGGKFSKSSYK 125

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG SVVNALS+ + V V R   I+ Q+++RG+  + +E   +    RGT + F
Sbjct: 126 VSGGLHGVGASVVNALSEWMEVEVHRDGKIYRQRYARGVKTTEVEVIGETNK-RGTIVRF 184

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +PD  IF     FD+  +L   +  A+L+  +   +  ++   ++         ++ GGL
Sbjct: 185 KPDKLIFTT-TEFDSDTILTRLRDLAFLNPSITIEFVDERNDIKRT-------LHYAGGL 236

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGT 329
           K ++    +    +   +    +++        ++     E+   I S+ N I T +GGT
Sbjct: 237 KEFIAHLNKGSKTLHEVVVIDGSQQDCEVHIAFQYTD---EDGETIVSFVNNIKTIDGGT 293

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSV-FIREPEFAGQTKTKLV 388
           H +G + A TR + +  +     +      +DL      +++V  +  P+F GQTK+KL 
Sbjct: 294 HVTGFKTAFTRVVNELGKKKNLIKGEPFKGEDLREGMTAVVNVLMMGTPQFEGQTKSKLG 353

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447
           + + Q  V   +RD    Y   N      +++   +  E R   ++ RE V RK+A+   
Sbjct: 354 NEEIQDAVAKVVRDKLTDYFEVNETVLKIIIQKAQQAREAREAAKRAREAVKRKSALGAS 413

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC        ELFIVEGDSAGGSAKQAR+R+ QA+LPLRGKILNV  +   K+
Sbjct: 414 TLPGKLADCITKNFEEAELFIVEGDSAGGSAKQARDRNFQAILPLRGKILNVEKSSELKL 473

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N+Q+ D++ A+G      +    LRY K++IMTDADVDGAHI +LLL  FY+ M  LI
Sbjct: 474 LKNEQVKDIIMAIGGGIGENFDTSKLRYGKIVIMTDADVDGAHIRTLLLALFYRYMRQLI 533

Query: 568 EQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           E++ +++  PPL++++  G K +Y + +E   +++    K    + E+ R+KGLGEM   
Sbjct: 534 EEERIYIAMPPLYKLSISGEKPMYLYSDEELNEMIN-IAKQNNKRYEVQRYKGLGEMNPE 592

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DV 684
           QL ET M+   R +++V+I       ++       LMG   +ER ++I   A  +   D+
Sbjct: 593 QLWETTMNPKTRKIIKVKIED----AEEADSLFEILMGKDPEERREYIMRHARQLSLVDL 648

Query: 685 G 685
            
Sbjct: 649 D 649


>gi|295398131|ref|ZP_06808180.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Aerococcus viridans
           ATCC 11563]
 gi|294973650|gb|EFG49428.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Aerococcus viridans
           ATCC 11563]
          Length = 689

 Score =  606 bits (1561), Expect = e-171,   Method: Composition-based stats.
 Identities = 247/661 (37%), Positives = 386/661 (58%), Gaps = 21/661 (3%)

Query: 29  IPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDE 88
             +      +  + +YDAS I++LEGLE VR RPGMYIG T    LHHL  E++DN++DE
Sbjct: 45  SEEEKMAKKRELAKDYDASQIQVLEGLEAVRKRPGMYIGSTSASGLHHLVWEIVDNSIDE 104

Query: 89  VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148
            +AG+A  I+V+++ +  +TVVD+GRGIPV+       +  +E + T LHAGGKF    Y
Sbjct: 105 ALAGFAGHIQVTIEKDNSITVVDDGRGIPVDIQS-NTGRPAVETVFTVLHAGGKFGGGGY 163

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG SVVNALS+ LHV V +   I+ Q+F +G  +S +E+     +  GT + 
Sbjct: 164 KVSGGLHGVGASVVNALSEWLHVYVHKNGRIYHQEFRQGAIVSDVEQTGDT-DTHGTVVH 222

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F+PD +IF +   F+   L +  +  A+L+  ++      +    K        +++ GG
Sbjct: 223 FKPDAEIFTETTTFEFEVLNRRVRELAFLNKGLRISLMDARSENHKTAS-----YHYEGG 277

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           +K Y++   +++ ++  +    + E+ G     VE A+ + +     I S+ N I T EG
Sbjct: 278 IKEYIEYMNKDKDVLFEQPIYLEDEQDGI---EVEVALQYTDGFHSNILSFANNIHTFEG 334

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           G HESG + ALTR I  YA   +  +    ++  +D+      I+S+   +P+F GQTK 
Sbjct: 335 GMHESGAKTALTRVINNYARSQKLIKENEDNLTGEDVREGITLIVSIRHPDPQFEGQTKM 394

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAI 444
           KL + + +   +N     F+ +L++NP  A ++++     S+ RL  ++ RE+  +K+ +
Sbjct: 395 KLGNSEVRTITDNLFATHFETFLLENPQIARRIVDKGTVASKARLAAKRAREMTRKKSGL 454

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADCS      +ELFIVEG+SAGGSAKQ R+R  QA+LP+RGKILNV  A  
Sbjct: 455 EISNLPGKLADCSSRNPEESELFIVEGNSAGGSAKQGRSRHFQAILPIRGKILNVEKASM 514

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           ++I +N++I  L  A+G   ++ +     RY K++IMTDADVDGAHI +LLLT  Y+ M 
Sbjct: 515 DRILSNEEIRSLFTAMGTGWQNDFDITKARYHKLVIMTDADVDGAHIRALLLTLIYRYMR 574

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
            +++  ++++  PPL+++ QG K VY   ++  ++ L+        K  I R+KGLGEM 
Sbjct: 575 PILDAGYVYIAVPPLYQVRQGKKIVYLDTDKQLEEYLQTIPAT--PKPAIQRYKGLGEMD 632

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           A QL ET MD   RTLL+V ++  +    +    IN LMG   + R  FI+E A++  ++
Sbjct: 633 AEQLWETTMDPANRTLLQVNVDDAV----EADKIINMLMGDHVEPRRDFIEENATYA-NI 687

Query: 685 G 685
            
Sbjct: 688 D 688


>gi|225552337|ref|ZP_03773277.1| DNA gyrase, B subunit [Borrelia sp. SV1]
 gi|225371335|gb|EEH00765.1| DNA gyrase, B subunit [Borrelia sp. SV1]
          Length = 634

 Score =  605 bits (1560), Expect = e-171,   Method: Composition-based stats.
 Identities = 244/647 (37%), Positives = 369/647 (57%), Gaps = 19/647 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY AS+I++L+GLE VR RPGMYIG      LHHL  EV+DN++DE +AG+ + I+V ++
Sbjct: 2   NYVASNIQVLKGLEAVRKRPGMYIGSVSVNGLHHLVYEVVDNSIDEALAGFCDRIDVIIN 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV+DNGRGIP + H +    S LE++LT LH+GGKF+  TY++SGGLHGVGISVV
Sbjct: 62  LDNTITVIDNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L V V R   IF Q FS+GIP S +E   +     GTR+TF  D +IF     +
Sbjct: 121 NALSSFLEVYVNRDGKIFRQTFSKGIPTSKVEIVGESS-ITGTRVTFLADSEIFETL-DY 178

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L K  +  A+L+ ++       +   EK        FYF GG+K+++     +   
Sbjct: 179 NFDVLEKRLKELAFLNDKIYISIEDRRIGKEKSSK-----FYFEGGIKSFVDYLTNDSKA 233

Query: 283 ISSEIFTGKTE-KKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
             S+ +              ++W  ++ +    I S+ N I T EGGTH  G R  LT+ 
Sbjct: 234 FQSQPYYIDGFINDVIVNVGLKWTESYSDN---ILSFVNNINTREGGTHVMGFRSGLTKA 290

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + +  + ++   K   ++  DD       ++SV + EP+F GQTK+KL + + ++ VE  
Sbjct: 291 MNEAFKNSKISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIRKIVEVV 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458
           + +     +  NP+E   +L   I+ +  R   RK R    +K A   L LPGKLADC+ 
Sbjct: 351 VYEHLLEIINLNPLEIDTILGKAIKAARAREAARKARESERKKNAFESLALPGKLADCAS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E++IVEGDSAGGSAK  RNR  QA+LPL GK+LNV     +K+  N +++ ++ 
Sbjct: 411 KNPLEREIYIVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           +LG      +    LRY K+IIM DADVDG+HI +LLL FF++ M DLIE  ++++  PP
Sbjct: 471 SLGAGVGKTFDITKLRYHKIIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYIYIAMPP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L++I    +  Y ++E+ K+K L+  +   +  I + R+KGLGEM  +QL ET MD  +R
Sbjct: 531 LYKIKYDNRIYYFYEEKEKEKFLDSIETKNRNGISLQRYKGLGEMNPTQLWETTMDPARR 590

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +  + I+  +    + +     LMG   + R +FI++ A  + ++ 
Sbjct: 591 KMRLMNIDDAI----EAEKIFVTLMGDLVEPRKEFIEQNALNVINLD 633


>gi|90424324|ref|YP_532694.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris BisB18]
 gi|90106338|gb|ABD88375.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris BisB18]
          Length = 685

 Score =  605 bits (1560), Expect = e-171,   Method: Composition-based stats.
 Identities = 375/650 (57%), Positives = 493/650 (75%), Gaps = 9/650 (1%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
             +Y A+ I +LEGLEPVR RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+A  IEV+
Sbjct: 39  EGDYTAADIEVLEGLEPVRRRPGMYIGGTDEKALHHLFAEVIDNSMDEALAGHATFIEVT 98

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +GFLTV DNGRGIPV+ HPKFP KS LE+I+ TLH+GGKFD+  YE SGGLHGVG+S
Sbjct: 99  LAADGFLTVSDNGRGIPVDPHPKFPKKSALEVIMCTLHSGGKFDSKVYETSGGLHGVGVS 158

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  L V VAR   ++   F RG+P+  LE   KV N+RGT I F+PDP+IFG KA
Sbjct: 159 VVNALSCLLEVEVARSQQLYKMTFERGLPMGKLESLGKVHNRRGTTIRFKPDPQIFGPKA 218

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-YGIPEKEEFYFPGGLKTYLQTKLEN 279
            F   RL KM +SKAYL G V+  W CD E+ +   G+P ++ F+FPGGLK +L   + N
Sbjct: 219 AFKPQRLFKMARSKAYLFGGVEIRWHCDPELLKGLEGVPAEDTFHFPGGLKDFLGAAIHN 278

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVAL 338
            +L+  +IF+G++ + G H G  EWA+AW  + +  ++SYCNT+ T +GGTHE+G+R AL
Sbjct: 279 DTLVHPDIFSGRSGRVGAH-GGCEWAVAWTADADGFLSSYCNTVPTPDGGTHEAGMRSAL 337

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
            RG+K +AE     KRA SI S+D+M+ A  +LSVF+REPEF GQTK +L + +AQ+ VE
Sbjct: 338 LRGLKDHAERAGQGKRASSITSEDVMVGAAVMLSVFVREPEFQGQTKDRLATAEAQKIVE 397

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
            A++DPFDH+L  NP++A KLLE+V+ER++ERLRRR+++E++RKTA++KLRLPGKLADC+
Sbjct: 398 QAIKDPFDHWLSGNPLQANKLLEFVLERADERLRRRQEKEISRKTAVKKLRLPGKLADCT 457

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
              A G+ELFIVEGDSAGGSAKQ R+R  QA+LPLRGKILNVASA  +K+  N Q+ DL+
Sbjct: 458 NTAAEGSELFIVEGDSAGGSAKQGRDRKTQAILPLRGKILNVASATRDKLTANAQLSDLM 517

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
           QA+GC + + YRE+DLRY ++IIMTDADVDGAHIASLL+TFFY++M  LI++ HL+L  P
Sbjct: 518 QAIGCGSGANYREDDLRYSRIIIMTDADVDGAHIASLLITFFYRQMPKLIDEGHLYLAVP 577

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+R+T G K+VYA D+ HK+++L+  + +   K+++ RFKGLGEM+ +QLKET MD  K
Sbjct: 578 PLYRLTHGAKTVYARDDAHKEQLLKS-EFNANAKVDVGRFKGLGEMMPAQLKETTMDPAK 636

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD--VG 685
           RTLLRV +       + T DS+ +LMGTKA+ RF FI E+A F  +  + 
Sbjct: 637 RTLLRVALADI--DREGTADSVERLMGTKAEARFAFISEKAEFASEDLLD 684


>gi|40063591|gb|AAR38380.1| DNA topoisomerase IV, B subunit [uncultured marine bacterium 582]
          Length = 652

 Score =  605 bits (1560), Expect = e-171,   Method: Composition-based stats.
 Identities = 350/652 (53%), Positives = 453/652 (69%), Gaps = 10/652 (1%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           + +   +Y+ASSI +LEGLEPVR RPGMYIGGTDE+ALHHL +EV+DN+MDE +AG+AN 
Sbjct: 7   SSTQGSDYNASSIEVLEGLEPVRKRPGMYIGGTDERALHHLVAEVLDNSMDEAVAGHANR 66

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV L  +  +T+ DNGRGIPV+ HPKF +KS LE+IL TLH+GGKF    Y+ SGGLHG
Sbjct: 67  IEVELHADYAVTIRDNGRGIPVDPHPKFKDKSALEVILCTLHSGGKFSGKAYQTSGGLHG 126

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALSD + V VAR   +F Q+FSRGIPL P+ K     N+RGT +TF  D +IF
Sbjct: 127 VGASVVNALSDSMVVEVARNKELFEQRFSRGIPLGPVAKTGTAANRRGTSVTFHADEQIF 186

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
           G    F  ARLLKM +SKAYL   V+  W   K        P++  F+FPGGL  YL   
Sbjct: 187 GS-HRFKPARLLKMVRSKAYLFSGVEIRW---KSAVSDGDTPQEAVFHFPGGLADYLGET 242

Query: 277 LENRSLISSEIFTGKTE--KKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESG 333
           L   +  + + F G  +  +K +  G VEWAI W    +  I SYCNT+ T EGGTHE+G
Sbjct: 243 LAGATTYAEKPFAGSIDFQEKFSVPGKVEWAINWTPARDGFIQSYCNTVPTPEGGTHEAG 302

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
              A+ +G++ Y EL+ NK+A  I  DDL+     ++S FI EPEF GQTK +L + +AQ
Sbjct: 303 FWTAILKGMRAYGELSNNKKAAQITRDDLITGGCALVSCFISEPEFVGQTKDRLATTEAQ 362

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
           R VENA+RD FD++L  +   A  +L++++ R+EERLRRR+++E  RKTA ++LRLPGKL
Sbjct: 363 RLVENAVRDHFDNWLAADTKSAGAILDFLVLRAEERLRRRQEKETQRKTATKRLRLPGKL 422

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
            DCS     GTELF+VEGDSAGGSAK ARNR  QA+LPLRGKILNV  A S KI  NQ+I
Sbjct: 423 VDCSATAREGTELFLVEGDSAGGSAKMARNRKVQALLPLRGKILNVLGAASAKIGTNQEI 482

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            DL QA+G    +++  +DLRY+K+IIMTDADVDGAHIA+LL+TFF+ +M  +I+  HL+
Sbjct: 483 SDLSQAMGVNLGTRFNLDDLRYDKIIIMTDADVDGAHIAALLMTFFFTQMRPMIDAGHLY 542

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           L  PPLFR+TQG K VY  DE  + + LE+    GKGKI++SRFKGLGEM A  LKET M
Sbjct: 543 LACPPLFRLTQGAKRVYCVDEIERDEWLEK-GLGGKGKIDVSRFKGLGEMDAKDLKETTM 601

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D + R L+RV I++D     +T D + +LMG K + RF++IQE A F+ ++ 
Sbjct: 602 DPSSRKLIRVSIDEDE--PGETGDLVERLMGKKPELRFQYIQENARFVQELD 651


>gi|15594781|ref|NP_212570.1| DNA gyrase, subunit B (gyrB) [Borrelia burgdorferi B31]
 gi|3915725|sp|P33769|GYRB_BORBU RecName: Full=DNA gyrase subunit B
 gi|2688337|gb|AAC66802.1| DNA gyrase, subunit B (gyrB) [Borrelia burgdorferi B31]
          Length = 639

 Score =  605 bits (1560), Expect = e-171,   Method: Composition-based stats.
 Identities = 244/647 (37%), Positives = 369/647 (57%), Gaps = 19/647 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY AS+I++L+GLE VR RPGMYIG      LHHL  EV+DN++DE +AG+ + I+V ++
Sbjct: 7   NYVASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLVYEVVDNSIDEALAGFCDRIDVIIN 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV+DNGRGIP + H +    S LE++LT LH+GGKF+  TY++SGGLHGVGISVV
Sbjct: 67  LDNTITVIDNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 125

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L V V R   IF Q FS+GIP S +E   +     GT++TF  D +IF     +
Sbjct: 126 NALSSFLEVYVNRDGKIFRQTFSKGIPTSKVEVVGESS-VTGTKVTFLADSEIFETL-DY 183

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L K  +  A+L+ ++       +   EK        FYF GG+K+++     +   
Sbjct: 184 NFDVLEKRLKELAFLNDKIYISIEDKRIGKEKSSK-----FYFEGGIKSFVDYLTNDSKA 238

Query: 283 ISSEIFTGKTE-KKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
             SE +              ++W  ++ +    I S+ N I T EGGTH  G R  LT+ 
Sbjct: 239 FQSEPYYIDGFINDVIVNVGLKWTESYSDN---ILSFVNNINTREGGTHVMGFRSGLTKA 295

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + +  + ++   K   ++  DD       ++SV + EP+F GQTK+KL + + ++ VE  
Sbjct: 296 MNEAFKNSKISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIRKIVEVV 355

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458
           + +     +  NP+E   +L   I+ +  R   RK R    +K A   L LPGKLADC+ 
Sbjct: 356 VYEHLLEIINLNPLEIDTILGKAIKAARAREAARKARESERKKNAFESLALPGKLADCTS 415

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E++IVEGDSAGGSAK  RNR  QA+LPL GK+LNV     +K+  N +++ ++ 
Sbjct: 416 KNPLEREIYIVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 475

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           +LG      +    LRY K+IIM DADVDG+HI +LLL FF++ M DLIE  ++++  PP
Sbjct: 476 SLGAGVGKTFDITKLRYHKIIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYIYIAMPP 535

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L++I    +  Y ++E+ K+K L+  +   +  I + R+KGLGEM  +QL ET MD  +R
Sbjct: 536 LYKIKYDNRIYYFYEEKEKEKFLDSIETKNRNSISLQRYKGLGEMNPTQLWETTMDPARR 595

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +  + I+  +    + +     LMG   + R +FI++ A  + ++ 
Sbjct: 596 KMRLMNIDDAI----EAEKIFVTLMGDLVEPRKEFIEQNALNVINLD 638


>gi|313886470|ref|ZP_07820186.1| DNA gyrase, B subunit [Porphyromonas asaccharolytica PR426713P-I]
 gi|312924016|gb|EFR34809.1| DNA gyrase, B subunit [Porphyromonas asaccharolytica PR426713P-I]
          Length = 649

 Score =  605 bits (1560), Expect = e-171,   Method: Composition-based stats.
 Identities = 263/661 (39%), Positives = 375/661 (56%), Gaps = 21/661 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
                    Y ASSI++LEGLE VR RP MYIG   EK LHHL  EV+DN++DE +AGY 
Sbjct: 1   MTTPQEKGAYSASSIQVLEGLEAVRKRPAMYIGDISEKGLHHLVYEVVDNSIDEALAGYC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             + V +  +  + V DNGRGIPV+ H K   KS LE+++T LHAGGKFD  +Y++SGGL
Sbjct: 61  TEVLVEILSDNSIQVTDNGRGIPVDMHAK-EGKSALEVVMTVLHAGGKFDKGSYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+S VNALS+ L   V R   I+ Q++SRG PL+ +E   K  +  GTRITF+PD  
Sbjct: 120 HGVGVSCVNALSESLIAEVHRDGKIYRQEYSRGKPLTGVEVVGKADD-TGTRITFKPDDT 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   + +  L    +  +YL+  +       +   E+   P+   FY   GL  +++
Sbjct: 179 IFRETI-YSSETLSHRLRELSYLNAGLHLKLIDHRVHDEEGQ-PKSWIFYSENGLSEFVR 236

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
                +  +  ++    TEK+G     VE A+ +       + +Y N I T EGGTH +G
Sbjct: 237 YVDGAKESLIHDVIHHTTEKQGVP---VEVALTYNTSYQENVYTYVNDIHTIEGGTHLTG 293

Query: 334 LRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R  LTR +KKYA  +    K    I  DD       I+SV + EP+F GQTKTKL + +
Sbjct: 294 FRRGLTRTLKKYATDSHLLDKIKEEISGDDFREGLTAIVSVKVAEPQFEGQTKTKLGNSE 353

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLP 450
               V+ A+ +  + YL ++P EA  +++ VI         RR +  V RK+ +    LP
Sbjct: 354 IVGVVDAAVSEALEIYLEEHPTEAKLIVDKVILAAQARHAARRARELVQRKSPLTGGGLP 413

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS       ELFIVEGDSAGG+AKQ R+   QA+LPLRGKILNV  A   +I +N
Sbjct: 414 GKLADCSSKDPSECELFIVEGDSAGGTAKQGRDSKYQAILPLRGKILNVEKAMQHRILDN 473

Query: 511 QQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
            +I ++  ALG    ++   +      LRY K+IIMTDADVDGAHIA+L+LTFF++ M  
Sbjct: 474 AEIKNIYTALGVTVGTEDDSKALNLSKLRYHKIIIMTDADVDGAHIATLILTFFFRNMRP 533

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           LIE  ++++ +PPL+   +     Y   +E K   + ++    + +I+I R+KGLGEM  
Sbjct: 534 LIENGYVYIANPPLYLCKKDRIEEYCWTDEQKSDFVTKYGNGQENRIKIQRYKGLGEMND 593

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL +T M+   RTL +V I+    +L       + LM    + R +FI+E A++  ++ 
Sbjct: 594 VQLWDTTMNPQTRTLRQVTID----NLASADSVFSMLMSEDVEPRREFIEENATYA-NID 648

Query: 686 T 686
            
Sbjct: 649 A 649


>gi|145592574|ref|YP_001156871.1| DNA gyrase, B subunit [Salinispora tropica CNB-440]
 gi|145301911|gb|ABP52493.1| DNA gyrase subunit B [Salinispora tropica CNB-440]
          Length = 719

 Score =  605 bits (1560), Expect = e-171,   Method: Composition-based stats.
 Identities = 242/686 (35%), Positives = 369/686 (53%), Gaps = 21/686 (3%)

Query: 10  STLPPQSQGSSEKLKKSGEIPDSPAFANQSASD--NYDASSIRILEGLEPVRMRPGMYIG 67
           +    +    + +      + D+  +   +A D   Y A SI +LEGLE VR RPGMYIG
Sbjct: 44  ARPTSRPVRRTPRPVVPNGVADARKWPRVAAQDKQEYGAESITVLEGLEAVRKRPGMYIG 103

Query: 68  GTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNK 127
            T E+ LHHL  EV+DNA+DE +AG+ + I+V L  +G + V DNGRG PV+ HPK   K
Sbjct: 104 STGERGLHHLVWEVVDNAVDEALAGHCDTIDVVLLADGGVRVTDNGRGFPVDPHPKL-KK 162

Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187
             +E+ LT LHAGGKFD   Y +SGGLHGVG+SVVNALS  + V + +   ++ Q ++  
Sbjct: 163 PGVEVALTVLHAGGKFDGKAYAVSGGLHGVGVSVVNALSTRMAVEIQKDGYVWRQSYTDS 222

Query: 188 IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247
            P    +   +  +  G+ ++F PDP++F     FD   + +  Q  A+L+  +   +  
Sbjct: 223 KPTPLEK--GESTDATGSAVSFWPDPRVFET-VAFDFQTIYRRLQEMAFLNRGLTIHFLD 279

Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307
           ++      G   +  F + GG+  +++    +++ I   +    TE+ G    +VE A+ 
Sbjct: 280 ERVDEGDDGKMREVTFCYQGGIADFVRHLNASKTSIHKSVVEFGTEEDG---MSVEIAMQ 336

Query: 308 WCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMIS 365
           W E     + ++ N I T EGGTHE G R ALT  I +Y    +  K    +  +D+   
Sbjct: 337 WNESYGESVYTFANNINTHEGGTHEEGFRSALTSVINRYGAEKRLLKSDEKLSGEDIREG 396

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIE 424
              I+SV +  P+F GQTKTKL +   +  V+    +    +L +NP EA  ++ +    
Sbjct: 397 LAAIISVKLTNPQFEGQTKTKLGNTPVKSFVQRVCNEWLVDWLDRNPAEAKVIITKASQA 456

Query: 425 RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
                  ++ ++   RK+ +    +PGKLADC        E+FIVEGDSAGGSAKQ R+ 
Sbjct: 457 ARARVAAQQARKLARRKSLLESGSMPGKLADCQSTDPRECEVFIVEGDSAGGSAKQGRDP 516

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA+LP+RGKILNV  A  +++  N ++  L+ ALG      +  E LRY K+++M DA
Sbjct: 517 RTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGIHDDFDIEKLRYHKIVLMADA 576

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT---QGTKSVYAHDEEHKQKI- 600
           DVDG HI +LLLT  ++ M  L+E  H++L +PPL++I    +G  + YA+ +  +  + 
Sbjct: 577 DVDGQHIQTLLLTLLFRFMRPLVELGHVYLAAPPLYKIKWNRKGDDAQYAYSDRERDGLI 636

Query: 601 -LEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
            L + KK      +I RFKGLGEM   +L ET M+   RTL +V ++          +  
Sbjct: 637 ALRQQKKPNAKPDDIQRFKGLGEMNYPELWETTMNPATRTLRQVTLDD----AATADELF 692

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
           + LMG   + R  FIQ  A  +  + 
Sbjct: 693 SVLMGEDVEARRSFIQRNAKDVRFLD 718


>gi|62865988|gb|AAY17144.1| DNA gyrase B [Borrelia turicatae]
 gi|62865990|gb|AAY17145.1| DNA gyrase B [Borrelia turicatae]
 gi|62865992|gb|AAY17146.1| DNA gyrase B [Borrelia turicatae]
 gi|62865994|gb|AAY17147.1| DNA gyrase B [Borrelia turicatae]
 gi|62865996|gb|AAY17148.1| DNA gyrase B [Borrelia turicatae]
 gi|62865998|gb|AAY17149.1| DNA gyrase B [Borrelia turicatae]
 gi|62866000|gb|AAY17150.1| DNA gyrase B [Borrelia turicatae]
          Length = 634

 Score =  605 bits (1560), Expect = e-171,   Method: Composition-based stats.
 Identities = 242/647 (37%), Positives = 367/647 (56%), Gaps = 19/647 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y AS+I++L+GLE VR RPGMYIG      LHHL  EV+DN++DE +AG+ + IEV ++
Sbjct: 2   SYVASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLVYEVVDNSIDEALAGFCDKIEVVIN 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV DNGRGIP + H +    S LE++LT LH+GGKF+  TY++SGGLHGVGISVV
Sbjct: 62  SDNSVTVNDNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L V V+R    F Q +SRGIP S +E    V + RGT++TF  D +IF     +
Sbjct: 121 NALSSFLEVVVSRDGNFFKQTYSRGIPTSEVEIVG-VSSNRGTKVTFLADSEIFETL-EY 178

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L K  +  A+L+ +++      +   E++       FYF GG+K ++     N   
Sbjct: 179 DFETLSKRLRELAFLNDKIRISIEDKRLGKERFLE-----FYFEGGIKAFVDFITNNSKN 233

Query: 283 ISSEIFTGKT-EKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
           I SE +  +           ++W   + +    I S+ N I T EGGTH +G +    + 
Sbjct: 234 IQSEPYFIEGTYDDVIVSVGLKWTEGYSDN---ILSFVNNINTREGGTHVAGFKSGFLKA 290

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + +  + ++   K   ++  DD       ++S+ + EP+F GQTK KL +   ++ VE  
Sbjct: 291 MSEAFKDSKISKKDVPNLTLDDFKEGLTAVISIKVPEPQFEGQTKGKLGNSYIKKIVETI 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458
           + +     +  N +E   +L   I  +  R   RK R    +K+A   L LPGKLADC+ 
Sbjct: 351 VHNELLKVIGNNLLEVDIILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCAS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E++IVEGDSAGGSAK  R+R  QA+LPL GK+LNV     +K+  N +++ ++ 
Sbjct: 411 KNPVEREIYIVEGDSAGGSAKMGRDRFYQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           +LG      +  E LRY K+IIM DADVDG+HI +LLLTFF++ M +LI+  H+++  PP
Sbjct: 471 SLGAGVGKNFYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIDNGHVYIAMPP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L++I       Y +D+  K+  L   +   + KI + R+KGLGEM  +QL ET M+   R
Sbjct: 531 LYKIKYENSVHYFYDDSEKEVFLSSIETGKRDKISLQRYKGLGEMNPTQLWETTMNPATR 590

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +  +EI+  +      ++    LMG   + R +FI++ A  + ++ 
Sbjct: 591 KMKLIEIDDAI----QAENIFVTLMGDDVEPRREFIEQNALDVVNLD 633


>gi|119953224|ref|YP_945433.1| DNA gyrase subunit B [Borrelia turicatae 91E135]
 gi|119861995|gb|AAX17763.1| DNA gyrase subunit B [Borrelia turicatae 91E135]
          Length = 639

 Score =  605 bits (1560), Expect = e-171,   Method: Composition-based stats.
 Identities = 242/647 (37%), Positives = 367/647 (56%), Gaps = 19/647 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y AS+I++L+GLE VR RPGMYIG      LHHL  EV+DN++DE +AG+ + IEV ++
Sbjct: 7   SYVASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLVYEVVDNSIDEALAGFCDKIEVVIN 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV DNGRGIP + H +    S LE++LT LH+GGKF+  TY++SGGLHGVGISVV
Sbjct: 67  SDNSVTVNDNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 125

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L V V+R    F Q +SRGIP S +E    V + RGT++TF  D +IF     +
Sbjct: 126 NALSSFLEVVVSRDGNFFKQTYSRGIPTSEVEIVG-VSSNRGTKVTFLADSEIFETL-EY 183

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L K  +  A+L+ +++      +   E++       FYF GG+K ++     N   
Sbjct: 184 DFETLSKRLRELAFLNDKIRISIEDKRLGKERFLE-----FYFEGGIKAFVDFITNNSKN 238

Query: 283 ISSEIFTGKT-EKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
           I SE +  +           ++W   + +    I S+ N I T EGGTH +G +    + 
Sbjct: 239 IQSEPYFIEGTYDDVIVSVGLKWTEGYSDN---ILSFVNNINTREGGTHVAGFKSGFLKA 295

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + +  + ++   K   ++  DD       ++S+ + EP+F GQTK KL +   ++ VE  
Sbjct: 296 MSEAFKDSKISKKDVPNLTLDDFKEGLTAVISIKVPEPQFEGQTKGKLGNSYIKKIVETI 355

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458
           + +     +  N +E   +L   I  +  R   RK R    +K+A   L LPGKLADC+ 
Sbjct: 356 VHNELLKVIGNNLLEVDIILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCAS 415

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E++IVEGDSAGGSAK  R+R  QA+LPL GK+LNV     +K+  N +++ ++ 
Sbjct: 416 KNPVEREIYIVEGDSAGGSAKMGRDRFYQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 475

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           +LG      +  E LRY K+IIM DADVDG+HI +LLLTFF++ M +LI+  H+++  PP
Sbjct: 476 SLGAGVGKNFYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIDNGHVYIAMPP 535

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L++I       Y +D+  K+  L   +   + KI + R+KGLGEM  +QL ET M+   R
Sbjct: 536 LYKIKYENSVHYFYDDSEKEVFLSSIETGKRDKISLQRYKGLGEMNPTQLWETTMNPATR 595

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +  +EI+  +      ++    LMG   + R +FI++ A  + ++ 
Sbjct: 596 KMKLIEIDDAI----QAENIFVTLMGDDVEPRREFIEQNALDVVNLD 638


>gi|315925615|ref|ZP_07921825.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621156|gb|EFV01127.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 668

 Score =  605 bits (1560), Expect = e-171,   Method: Composition-based stats.
 Identities = 252/675 (37%), Positives = 378/675 (56%), Gaps = 22/675 (3%)

Query: 15  QSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKAL 74
           Q   + +++ +               +  Y A  I++LEGLE V+ RPGMYIG T  + L
Sbjct: 11  QQNPAPKRVDEIESDRGGIMSETTKTNHEYGADQIQVLEGLEAVKRRPGMYIGSTGSQGL 70

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           HHL  EV+DNA+DE +AGY + I VS+D +  +TV+D+GRGIP   + K   K+ +E+ L
Sbjct: 71  HHLVYEVVDNAIDEALAGYCDKIIVSVDKDNAVTVMDDGRGIPTGINHK-EGKTGVELAL 129

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKF    Y++SGGLHGVG+SVVNALS+ L V V +   ++ Q F  G   S L+
Sbjct: 130 TVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSEVLTVEVKQNKKVYRQTFEHGNKTSELD 189

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
                 N+ GT+I F+PDP+IF     +D   L    +  A+L+  V      ++   E+
Sbjct: 190 VVG-TTNRTGTKIYFKPDPEIFDTTV-YDYDVLEHRLRELAFLNKGVAITLKDERPGQEQ 247

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313
            G      +++ GG+++Y++    N+  +  +I   +          +E A  +      
Sbjct: 248 TGE-----YHYAGGIRSYIEYMNRNKDPLYPQITYYEKAMD---EYALELAFQYTRGYQE 299

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILS 371
            I SY N I T EGGTH +G + ALTR I  YA      +    ++  DD+      ++S
Sbjct: 300 NIYSYANNIYTPEGGTHLNGFKSALTRTINNYARKAGLLKQNDKNLSGDDVREGLTAVIS 359

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           + + EP+F GQTKTKL + + +  VE  + +   ++L +NP  A  ++E  I  S  R+ 
Sbjct: 360 IKLLEPQFEGQTKTKLGNPEVKGIVETIVNEELSNFLEENPNVAKAIVEKNISASHARMA 419

Query: 432 RRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            ++ RE+  RK+A+    LPGKLADC +     +E+FIVEGDSAGGSAK  R+   QA+L
Sbjct: 420 AKRAREMTRRKSALDATSLPGKLADCREKDPAQSEIFIVEGDSAGGSAKVGRDSRIQAIL 479

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           PLRGKILNV  A  +++  +  I  ++ A G      +  E  RY K++IMTDADVDGAH
Sbjct: 480 PLRGKILNVEKARLDRMLTSDTIKGMITAFGTGIGEDFDIEKARYHKIVIMTDADVDGAH 539

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           I +LLLTFFY+ M  LI+  ++++  PPL++++ G    YA+D+    + LE+     + 
Sbjct: 540 IRTLLLTFFYRYMRGLIDHGYVYIAQPPLYKVSWGKHVEYAYDDADLNRRLED---KDRS 596

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADER 670
           ++ + R+KGLGEM A QL ET M+ + RT+LRV I           +    LMG K   R
Sbjct: 597 RVTLQRYKGLGEMDAEQLWETTMNPDTRTMLRVGIEDATY----ADEIFTMLMGDKVQPR 652

Query: 671 FKFIQERASFIDDVG 685
            +FI+  A  + ++ 
Sbjct: 653 KEFIERNAKKVQNLD 667


>gi|227529858|ref|ZP_03959907.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC
           49540]
 gi|227350227|gb|EEJ40518.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC
           49540]
          Length = 648

 Score =  605 bits (1559), Expect = e-171,   Method: Composition-based stats.
 Identities = 246/661 (37%), Positives = 375/661 (56%), Gaps = 20/661 (3%)

Query: 30  PDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEV 89
            D         +  YDAS I++L+GL+ VR RPGMYIG T  + LHHL  E++DN +DE 
Sbjct: 2   SDEQKETKAELASEYDASQIQVLKGLDAVRKRPGMYIGSTSAQGLHHLVWEIVDNGIDEA 61

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
           +AG+ N I V ++ +  ++V DNGRGIPV+   K   K  LE + T LHAGGKF    Y+
Sbjct: 62  LAGFCNEINVIVEPDNSISVTDNGRGIPVDTQ-KETGKPALETVFTVLHAGGKFGGGGYK 120

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRI 207
           +SGGLHGVG SVVNALS EL V V+RQ   +   F  G   + ++  ++    +  GT +
Sbjct: 121 VSGGLHGVGASVVNALSTELDVKVSRQGKRYYMDFDHGHVKTSMKVIDENVPEDIHGTTV 180

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PDP+IF +   ++   L    +  A+L+  +K      ++   +        F++ G
Sbjct: 181 HFKPDPEIFRETTTYNIKTLTNRLRELAFLNKGLKITIEDKRDKESERQE-----FHYEG 235

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G++ Y+    E ++ +       + ++ G    TVE ++ + +    ++ ++ N I T E
Sbjct: 236 GIRHYVDFLNEGKTTLFEPPIYVEGKENGI---TVEVSLQYTDSYRSDLLTFTNNIHTYE 292

Query: 327 GGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GGTHE+G ++ALTR I  Y       K   ++  DD+      ++S+   +P+F GQTKT
Sbjct: 293 GGTHETGFKMALTRVINDYGHKAGVLKSNETLSGDDVREGLTAVVSIKHPDPQFEGQTKT 352

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444
           KL + DA+   ++     F+ +L+++P EA +++E     S+ R+  ++ RE   +K+ +
Sbjct: 353 KLGNSDARTATDHVFAATFNRFLLEHPDEARQIIEKGQLASKARVAAKRAREVTRKKSGL 412

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLAD +    + +ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  
Sbjct: 413 EISNLPGKLADNTSKDPNISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKATL 472

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           +++  N +I  L  ALG      +      Y K+IIMTDADVDGAHI +LLLT FY+ M 
Sbjct: 473 DRVLANDEIRSLFTALGTGFGEDFDITKANYHKLIIMTDADVDGAHIRTLLLTLFYRFMK 532

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
            +I   ++++  PPL+++ QG    Y   +E   +++   +     K  I R+KGLGEM 
Sbjct: 533 PMITHGYVYIAQPPLYQVRQGKFVKYIESDEELDRVVNSLQPS--PKPVIQRYKGLGEMD 590

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           A QL ET MD  KR LLRV ++      K  ++    LMG K   R +FI++ A F++++
Sbjct: 591 AEQLWETTMDPEKRHLLRVNLDD----AKAAEEIFPMLMGNKVTPRREFIEKNAKFVENL 646

Query: 685 G 685
            
Sbjct: 647 D 647


>gi|284928768|ref|YP_003421290.1| DNA gyrase subunit B [cyanobacterium UCYN-A]
 gi|284809227|gb|ADB94932.1| DNA gyrase subunit B [cyanobacterium UCYN-A]
          Length = 642

 Score =  605 bits (1559), Expect = e-171,   Method: Composition-based stats.
 Identities = 254/653 (38%), Positives = 376/653 (57%), Gaps = 19/653 (2%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +   +Y A  I++LEGLEPVR RPGMYIG T  K LHHL  EV+DN++DE +AG+   IE
Sbjct: 2   AIKSDYGAEQIQVLEGLEPVRKRPGMYIGTTGPKGLHHLVYEVVDNSIDEALAGHCTHIE 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V ++ +G +TV DNGRGIP + HP    KS LE ++T LHAGGKF    Y++SGGLHGVG
Sbjct: 62  VDINIDGSVTVTDNGRGIPTDIHP-ATGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           ISVVNALS+ L + V R N++++Q++  G+ +S L+K+    + +GT ++F PD +IF  
Sbjct: 121 ISVVNALSEWLIIKVWRDNSVYTQRYECGVAVSELKKEPDTEHPKGTSVSFLPDKQIFTS 180

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              FD A L    +  AYL+ ++   ++  ++       P  E +++ GGL+ Y+     
Sbjct: 181 DTNFDYATLSARLRELAYLNSQITIKFTDYRK-----QEPYSETYFYEGGLREYVTYMCR 235

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
           N+  +  +I     EKKG  +            +  +  + N I T +GGTH  GL+  L
Sbjct: 236 NKEALHKDIIYICGEKKGV-QVEAALLWCIDAYSDNLLGFANNIRTIDGGTHLEGLKTVL 294

Query: 339 TRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +   A      +    ++  +++     GI+SV + EPEF GQTKTKL + + +  V
Sbjct: 295 TRTMNNVARKRNKIKENEPNLSGENVREGLTGIVSVKVPEPEFEGQTKTKLGNTEVRGIV 354

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
           +  + +    YL  NP     ++E  ++  +     R+ R+ V RK+ +    LPGKLAD
Sbjct: 355 DLLVGEVLGEYLEFNPHVGDIIIEKAVQAFKAAEAARRARDLVRRKSVLESSPLPGKLAD 414

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS       E+F+VEGDSAGGSAKQ R+R  QA+LPLRGKI+N+      KI  N +I  
Sbjct: 415 CSTRDPAEAEIFLVEGDSAGGSAKQGRDRRFQAILPLRGKIINIEKTDDAKIYKNNEIQS 474

Query: 516 LVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALG   + +  +   LRY +++IMTDADVDGAHI +L+LTFFY+    LIEQ  +++
Sbjct: 475 LITALGLGIKGEEFDVSQLRYHRIVIMTDADVDGAHIRTLILTFFYRYQRLLIEQGFIYI 534

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL++I +G    Y ++E+  Q  ++    +   K  I RFKGLGEM+  QL  T M+
Sbjct: 535 ACPPLYKIERGRNHSYCYNEQQLQDNIKALPAN--AKYTIQRFKGLGEMMPVQLWNTTMN 592

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS--FIDDVG 685
              R++ RVEI+  +    +       LMG K   R +FI+   S   ++D+ 
Sbjct: 593 PETRSMKRVEIDDAV----EADRIFTILMGDKVAPRRQFIENYGSKLNLNDLD 641


>gi|83952846|ref|ZP_00961576.1| DNA topoisomerase IV subunit B [Roseovarius nubinhibens ISM]
 gi|83835981|gb|EAP75280.1| DNA topoisomerase IV subunit B [Roseovarius nubinhibens ISM]
          Length = 652

 Score =  605 bits (1559), Expect = e-171,   Method: Composition-based stats.
 Identities = 350/652 (53%), Positives = 447/652 (68%), Gaps = 9/652 (1%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
                S +YDASSI++LE +E VR+RPGMYIGG D++ALHH+ +E+IDN+MDE +AG+A 
Sbjct: 7   TQMPDSGDYDASSIQVLEDMEHVRLRPGMYIGGKDDRALHHMVAEIIDNSMDEAVAGHAT 66

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            IEV L  NG ++V DNGRGIP   HPK P+KS LEII  TL+AGGKF   +YE SGGLH
Sbjct: 67  WIEVELHENGHVSVRDNGRGIPTGPHPKDPSKSALEIIFCTLNAGGKFSGDSYETSGGLH 126

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALSD L V VAR   +F+ +FSRG+P   LEK     N+RGT +TF PDP+I
Sbjct: 127 GVGSSVVNALSDHLRVEVARNKELFAMEFSRGVPQGKLEKIGAAPNRRGTAVTFHPDPEI 186

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           FG        RL KM +SKAYL   V+  W   K        P + +F+FPGGL  YL+ 
Sbjct: 187 FGS-LKLKPHRLFKMARSKAYLFSGVEIRW---KSAIPDGDTPMEAKFHFPGGLSDYLKE 242

Query: 276 KLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESG 333
            +   +  +   F G    +K    G VEWAI W    +  I SYCNT+ T EGGTHE+G
Sbjct: 243 AMGGATTYAEVPFAGTVSFEKFNAPGKVEWAINWTPARDGFIQSYCNTVPTPEGGTHEAG 302

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
              A+ +GIK Y EL  NK+A  I  +DL+  A  ++S FIREPEF GQTK +L + +AQ
Sbjct: 303 FWAAILKGIKAYGELVGNKKAGQITREDLVTGAGALVSCFIREPEFVGQTKDRLATTEAQ 362

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
           R VEN++RD FD++L  +   A  +L++++ R+EERLRRR+++E  RKTA +KLRLPGKL
Sbjct: 363 RMVENSVRDHFDNWLASDTKSAGAILDFLVLRAEERLRRRQEKETQRKTATKKLRLPGKL 422

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
            DCS N+  GTELFIVEGDSAGGSAK ARNR NQA+LPLRGKILNV  A S K+  N +I
Sbjct: 423 VDCSTNVRDGTELFIVEGDSAGGSAKMARNRVNQALLPLRGKILNVLGAASSKLGTNAEI 482

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            DL QALG    +++  +DLRY+KVIIMTDADVDGAHIASLL+TFF+ +M  +I+  HL+
Sbjct: 483 SDLTQALGVGLGTKFNLDDLRYDKVIIMTDADVDGAHIASLLMTFFFTQMRPMIDAGHLY 542

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           L  PPL+R+TQG K VY  DE  +   LE+    GKGKI++SRFKGLGEM A  LKET M
Sbjct: 543 LACPPLYRLTQGAKRVYCLDEPERDSWLEK-GLGGKGKIDVSRFKGLGEMDAKDLKETTM 601

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D   R L+RV I++D     +T D + +LMG K + RF++IQE A F++++ 
Sbjct: 602 DPKTRKLIRVTIDEDE--PGETGDLVERLMGKKPELRFQYIQENARFVEELD 651


>gi|224534805|ref|ZP_03675377.1| DNA gyrase, B subunit [Borrelia spielmanii A14S]
 gi|224514053|gb|EEF84375.1| DNA gyrase, B subunit [Borrelia spielmanii A14S]
          Length = 639

 Score =  605 bits (1559), Expect = e-171,   Method: Composition-based stats.
 Identities = 244/647 (37%), Positives = 369/647 (57%), Gaps = 19/647 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY AS+I++L+GLE VR RPGMYIG      LHHL  EV+DN++DE +AG+ + I+V ++
Sbjct: 7   NYVASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLVYEVVDNSIDEALAGFCDRIDVIIN 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV+DNGRGIP + H +    S LE++LT LH+GGKF+  TY++SGGLHGVGISVV
Sbjct: 67  LDNTITVIDNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 125

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L V + R   IF Q FS+GIP S +E   +     GT++TF  D +IF     +
Sbjct: 126 NALSSFLEVYINRDGKIFRQTFSKGIPTSKVEVVGE-SVITGTKVTFLADSEIFETL-DY 183

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L K  +  A+L+ ++       +   EK        FYF GG+K+++     N   
Sbjct: 184 NFDVLEKRLKELAFLNDKIYISIEDRRFGKEKSSK-----FYFEGGIKSFVDYLTNNSKA 238

Query: 283 ISSEIFTGKT-EKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
             SE +              ++W  ++ +    I S+ N I T EGGTH  G R  LT+ 
Sbjct: 239 YQSESYYIDGFMNDVIVNVGLKWTESYSDN---ILSFVNNINTREGGTHVMGFRSGLTKA 295

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + +  + ++   K   ++  DD       ++SV + EP+F GQTK+KL + + ++ VE  
Sbjct: 296 MNEAFKNSKISKKDVPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIKKIVEVI 355

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458
           + +     +  NP+E   +L   I+ +  R   RK R    +K A   L LPGKLADC+ 
Sbjct: 356 VYEHLLKIINLNPLEIDIILGKAIKAARAREAARKARESERKKNAFESLALPGKLADCTS 415

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E++IVEGDSAGGSAK  RNR  QA+LPL GK+LNV     +K+  N +++ ++ 
Sbjct: 416 KNPLEREIYIVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 475

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           +LG      +    LRY K+IIM DADVDG+HI +LLL FF++ M +LIE  ++++  PP
Sbjct: 476 SLGAGVGKTFDITKLRYHKIIIMADADVDGSHIRTLLLAFFFRYMRELIENGYIYIAMPP 535

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L++I    +  Y +DE+ K+K L+  +   +  I + R+KGLGEM  +QL ET MD  +R
Sbjct: 536 LYKIKYDNRIYYFYDEKEKEKFLDSIETKNRNSIFLQRYKGLGEMNPTQLWETTMDPARR 595

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +  + I+  +    + +     LMG   + R +FI++ A  + ++ 
Sbjct: 596 KMRLMNIDDAV----EAEKIFVTLMGDLVEPRKEFIEQNALNVINLD 638


>gi|326202777|ref|ZP_08192644.1| DNA gyrase, B subunit [Clostridium papyrosolvens DSM 2782]
 gi|325986854|gb|EGD47683.1| DNA gyrase, B subunit [Clostridium papyrosolvens DSM 2782]
          Length = 642

 Score =  605 bits (1559), Expect = e-171,   Method: Composition-based stats.
 Identities = 247/656 (37%), Positives = 379/656 (57%), Gaps = 20/656 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
             + + + +YD S I++LEGLE VR RPGMYIG T  + LHHL  E++ N++DE +AG  
Sbjct: 1   MNDFNNTSSYDESQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVANSVDEALAGRC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I+V +  +  +TV DNG GIPV  HPK     TLE++ T LHAGGKF +  Y +SGGL
Sbjct: 61  DTIQVIVHKDNSITVTDNGSGIPVGIHPKM-GIPTLEVVHTILHAGGKFGSGAYSVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS+ + V V R+  I+ QK+SRG P++ +E   +  +  GT  TF+PDP 
Sbjct: 120 HGVGASVVNALSESMEVEVKREGHIYRQKYSRGKPITSVEIIGETED-SGTITTFKPDPD 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   FD   ++   +  A+L+  +K      +          ++  ++ GG+ ++++
Sbjct: 179 IFEDIV-FDFDVMITRYREMAFLNRGIKIQLIDQR-----PDEIIEKNLHYEGGIISFVE 232

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              + +  +  ++   +  +       VE A+ + +     + SY N I T EGGTH +G
Sbjct: 233 YLNKTKEPLHDKVIYFEGIRDANI---VEVAMQYNDNYNETVFSYANNIATTEGGTHLTG 289

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R A+T+ +  YA       +   ++  +D+      ++SV + EP+F GQTKTKL + +
Sbjct: 290 FRSAITKVLNDYARKFNIIRENDKNLSGEDVREGLTAVISVKLPEPQFEGQTKTKLGNSE 349

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLP 450
            +  VEN + D  + +L +NP  A  +L+  +  +  R   RK      RK+A+    LP
Sbjct: 350 IRTLVENVVSDKLNIFLEENPAIAKIILDKSLTAARARDAARKARELTRRKSAMDSSTLP 409

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS+     TE+FIVEGDSAGGSAKQ R+R  QA+LPL GK+LNV  +  +K+ +N
Sbjct: 410 GKLADCSEKDPTKTEIFIVEGDSAGGSAKQGRDRKIQAILPLWGKMLNVEKSRLDKVFDN 469

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           +++  ++ ALG     ++    LRY+K+IIM DADVDG+HI  LLLTFF++ M  L+EQ 
Sbjct: 470 EKLAPVIIALGAGIGDEFDTSKLRYDKIIIMADADVDGSHIRMLLLTFFFRYMRPLVEQG 529

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK-KHGKGKIEISRFKGLGEMLASQLK 629
           H+++  PPLF++ +G    YA+D+    KI E+   +     + I RFKGLGEM   QL 
Sbjct: 530 HVYIAMPPLFKVYKGKDEYYAYDDRQVSKIFEDRGWRKDDPNVNIQRFKGLGEMNPDQLW 589

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           ET M+   RT+++V++   +       +  +  MG K + R ++I   A  +  + 
Sbjct: 590 ETTMNPETRTIMKVDVQDAIT----ADEVFSMFMGEKVEPRKEYIHLHAKDVTYLD 641


>gi|307693839|ref|ZP_07636076.1| DNA gyrase, B subunit [Ruminococcaceae bacterium D16]
          Length = 650

 Score =  605 bits (1559), Expect = e-170,   Method: Composition-based stats.
 Identities = 239/654 (36%), Positives = 361/654 (55%), Gaps = 19/654 (2%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
            +      Y  S I++LEGLE VR RPGMYIG T E  LHHL  E++DN++DE +AGY  
Sbjct: 11  NSTQVEHEYGGSEIQVLEGLEAVRKRPGMYIGSTSESGLHHLVYEIVDNSIDEALAGYCT 70

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V+++    +TV DNGRGIPV+  P+   +  LE++ T LHAGGKF    Y++SGGLH
Sbjct: 71  DITVTINPGNTITVTDNGRGIPVDIQPQ-TGRPALEVVFTVLHAGGKFGGGGYKVSGGLH 129

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS+ L V V +   I+  KFSRG     ++   K  +  GT +TF+PDP++
Sbjct: 130 GVGASVVNALSEWLEVQVHKNGEIYEMKFSRGKITQEMKVVGKT-DHTGTTVTFKPDPEM 188

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     ++   L    + +A+L+  ++      +   EK      ++  + GG++ ++  
Sbjct: 189 FDTL-EYNYETLHTRMREEAFLNAGLRIQTVDLRPGQEKE-----DDMCYEGGIREFVTF 242

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              N++ I   +      ++ +     E A+ + +     + S+ N + T EGG HE G 
Sbjct: 243 INRNKTPIHDGVIYMSGAREDSM---AEIAMQYNDGYQEVMVSFANNVHTPEGGMHEEGF 299

Query: 335 RVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
           R ALT  +  Y       K    +  DD       ++SV + E +F GQTK KL + + +
Sbjct: 300 RRALTNTLNAYGRKIGVLKNDDKVSGDDCREGLTCVISVKLTEAQFEGQTKAKLGNAEIR 359

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIER-SEERLRRRKQREVNRKTAIRKLRLPGK 452
             V + + +  + +L +NP     +LE  +         R+ +  + RKTA+    +P K
Sbjct: 360 TLVNSVVSEKLEIFLEENPKVGKLILEKAMMANRAREAARKARESIRRKTALGGAAMPDK 419

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L DC++     TEL+IVEGDSAGGSA Q R+   QA+LPL GK+LNV  A ++K+  N +
Sbjct: 420 LRDCNEANPELTELYIVEGDSAGGSATQGRDSRFQAILPLWGKMLNVEKARADKVYGNDK 479

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           +  ++ ALG      +    LRY KVIIM DADVDGAHI +LLLTFF++ M  LI+  ++
Sbjct: 480 LTPVITALGAGIGDDFDLNKLRYHKVIIMADADVDGAHIRTLLLTFFFRFMRPLIDNGYV 539

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKET 631
           +   PPL+++T+G  +  A  +E + KI  E    +   K+ I+R+KGLGEM   +L ET
Sbjct: 540 YAAVPPLYKLTKGKTTRVAFSDEERDKISAELRGDNPNAKVIINRYKGLGEMDPHELWET 599

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD  KRTL R+E++  +       +    LMG K + R ++IQE A    ++ 
Sbjct: 600 TMDPEKRTLKRIELDDAVR----ADEIFTLLMGEKVEPRREYIQENAKKAVNLD 649


>gi|329850536|ref|ZP_08265381.1| DNA topoisomerase IV, B subunit [Asticcacaulis biprosthecum C19]
 gi|328840851|gb|EGF90422.1| DNA topoisomerase IV, B subunit [Asticcacaulis biprosthecum C19]
          Length = 699

 Score =  605 bits (1559), Expect = e-170,   Method: Composition-based stats.
 Identities = 351/689 (50%), Positives = 467/689 (67%), Gaps = 15/689 (2%)

Query: 3   DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRP 62
           D      ++   + +  ++ +  +            +    Y ASSI +LEGLEPVRMRP
Sbjct: 19  DSQPVPETSSRAEKRQPAKPVASNPVKTPETPTPPPAPDSTYGASSIEVLEGLEPVRMRP 78

Query: 63  GMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122
           GMYIGGTDEKALHHLF+EV+DNAMDE +A +A  I V LD +G+++V D+GRGIPV+ HP
Sbjct: 79  GMYIGGTDEKALHHLFAEVLDNAMDEAVANHAKAIWVELDADGYVSVRDDGRGIPVDPHP 138

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
           K+P KS LE+I+T LH+GGKF    Y  SGGLHGVG SVVNALS+ L VT  R    + Q
Sbjct: 139 KYPGKSALEVIMTVLHSGGKFSGKAYATSGGLHGVGASVVNALSERLEVTAWRDGFEWQQ 198

Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
            F+RG  L P+E+ +  +  RGT++ F PD +IFG  A F  ARL +MT++KAYL   V+
Sbjct: 199 NFARGHSLGPIEQIQPSKK-RGTKMRFLPDVEIFGSTAHFKPARLYRMTKAKAYLFRGVQ 257

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
             W C          P +++FYFP GL  YL  +++      ++IF+G+ E+K    G V
Sbjct: 258 IFWKCATSQI-TDQTPPEDKFYFPNGLADYLAERIKGTE-ALTDIFSGRVERKDDA-GAV 314

Query: 303 EWAIAW-----CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI 357
           EWA+ W      + +  + SYCNTI T +GGTHE+GLR ALTR +K YAE+T +KR   I
Sbjct: 315 EWAVVWSGAGFDDHDSFVQSYCNTIPTPDGGTHEAGLRAALTRSLKTYAEMTGDKRGGLI 374

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
            ++D+   A  ++SVFIR PEF GQTK +L S DA R VE AL DPFDH+L  +P +A K
Sbjct: 375 TAEDVAAYAGIVISVFIRNPEFQGQTKDRLSSSDAARLVERALADPFDHWLTGSPKQAEK 434

Query: 418 LLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           LL+++IER+EERL++RK +EV R +A RKLRLPGKLADCS+  A GTELFIVEGDSAGGS
Sbjct: 435 LLQYIIERAEERLKKRKDKEVQRASATRKLRLPGKLADCSRQDAIGTELFIVEGDSAGGS 494

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AKQ RNR+ QA+LPLRGKILNVASA  +K+R N ++ DL  ALG +  ++++EEDLRYE+
Sbjct: 495 AKQGRNRNTQAILPLRGKILNVASATVDKLRQNSELSDLGLALGVQPGAKFKEEDLRYER 554

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           +IIMTDADVDGAHIASLL+TFFY+ M  ++   +L+L  PPL+R++ G +  YA D+ H+
Sbjct: 555 IIIMTDADVDGAHIASLLITFFYRTMPAMVRNGNLYLALPPLYRLSHGKEVHYAKDDSHR 614

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
            +IL +  K    K EI RFKGLGEM+ +QLKET MD   RTL RV +  +       +D
Sbjct: 615 AEILAKHFK--GKKPEIGRFKGLGEMMPAQLKETTMDPKTRTLARVTLPHEEED---IED 669

Query: 658 SINKLMGTKADERFKFIQERASF-IDDVG 685
            +  LMG K + R+++IQ+ A F  +D+ 
Sbjct: 670 LVETLMGRKPELRYRYIQDHAEFAAEDLD 698


>gi|260433138|ref|ZP_05787109.1| DNA topoisomerase IV, B subunit [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260416966|gb|EEX10225.1| DNA topoisomerase IV, B subunit [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 652

 Score =  605 bits (1559), Expect = e-170,   Method: Composition-based stats.
 Identities = 353/652 (54%), Positives = 448/652 (68%), Gaps = 10/652 (1%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
              ++  YDASSI +LEGLEPVR RPGMYIGGTDE+ALHH+ +E++DN+MDE +AG+AN 
Sbjct: 7   TPESATTYDASSIEVLEGLEPVRKRPGMYIGGTDERALHHMVAEILDNSMDEAVAGHANR 66

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV L  +  LTV DNGRGIP++ HPKFP+KS LE+IL TLHAGGKF    Y+ SGGLHG
Sbjct: 67  IEVELHEDYSLTVRDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQTSGGLHG 126

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALSD + V VAR   ++ Q+FSRGIPL P+EK     N+RGT +TF  DP+IF
Sbjct: 127 VGASVVNALSDSMVVQVARNKELYEQRFSRGIPLGPVEKVGAAPNRRGTTVTFHADPEIF 186

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                F  ARL K  +SKAYL   V+  W   K   +    P +  F+FPGGL  YL+  
Sbjct: 187 -GHHRFKPARLFKSIRSKAYLFSGVEIRW---KSAIDDGETPTEATFHFPGGLSDYLKET 242

Query: 277 LENRSLISSEIFTGKTE--KKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESG 333
           +   S  + + F G  +  +K    G VEWAI W    +  I SYCNT+ T EGGTH +G
Sbjct: 243 MNGSSTYADQPFAGTVDFNEKFGTPGKVEWAINWTPSRDGFIQSYCNTVPTPEGGTHVAG 302

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
              A+ +GIK Y EL  NK+A  I  DDL+     ++S FIREPEF GQTK +L +++AQ
Sbjct: 303 FWAAILKGIKAYGELINNKKAAQITRDDLITGGCALVSCFIREPEFVGQTKDRLATVEAQ 362

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
           R VENA+RD FD++L  +   A  +L+++I R+EERLRRR+++E  RKTA +KLRLPGKL
Sbjct: 363 RLVENAVRDHFDNWLAADTKSAGAILDFLILRAEERLRRRQEKETQRKTATKKLRLPGKL 422

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
            DCS     GTELFIVEGDSAGGSAK AR+R  QA+LPLRGKILNV  A S K+  N +I
Sbjct: 423 VDCSATNREGTELFIVEGDSAGGSAKMARDRKTQALLPLRGKILNVLGAASSKLGTNAEI 482

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            DL QALG    S++  +DLRY+KVIIMTDADVDGAHIASLL+TFF+ +M  +I+  HL+
Sbjct: 483 NDLTQALGVGLGSKFNLDDLRYDKVIIMTDADVDGAHIASLLMTFFFTQMRPMIDAGHLY 542

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           L  PPL+R+TQG K VY  DE  +     +    GKGKI++SRFKGLGEM A  LKET M
Sbjct: 543 LACPPLYRLTQGAKRVYCLDEAERDMW-LKKGLGGKGKIDVSRFKGLGEMDAKDLKETTM 601

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D   R L+RV I++D     +T D + +LMG K + RF++IQE A F++++ 
Sbjct: 602 DPKSRKLIRVTIDEDE--PGETGDLVERLMGKKPELRFQYIQENARFVEELD 651


>gi|289450191|ref|YP_003474441.1| DNA gyrase subunit B [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184738|gb|ADC91163.1| DNA gyrase, B subunit [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 696

 Score =  605 bits (1559), Expect = e-170,   Method: Composition-based stats.
 Identities = 253/682 (37%), Positives = 376/682 (55%), Gaps = 23/682 (3%)

Query: 9   FSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGG 68
            +  P        +     E+  +    + S +  Y  S I++LEGLE VR RPGMYIG 
Sbjct: 31  LADNPCALVEDFSEKNDFAELEKNQDEFDTSNNSKYSESDIQVLEGLEAVRKRPGMYIGD 90

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T  + LHHL  E++ N++DE +AG  ++I ++++ +G +TV D+G GIP+  HP      
Sbjct: 91  TTLRGLHHLVYEIVANSVDEALAGRCDMIYLTINHDGSITVEDDGSGIPIGIHP-TKGIP 149

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
           T+E++ T LHAGGKF    Y +SGGLHGVG SVVNALS+ + V V R+  I+   F+RG+
Sbjct: 150 TVEVVHTILHAGGKFGGGAYSVSGGLHGVGASVVNALSEWMDVYVKREGNIYKISFARGV 209

Query: 189 PLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247
              PL+       N+ GT+  F PD +IF D   F+   +L   +  A+L+  +   +  
Sbjct: 210 VTEPLKIIGHCPINETGTKTVFMPDKEIFPDIH-FNYDNMLTRYREMAFLNKEITIVFRD 268

Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307
           ++   E          ++ GG+ ++++    ++  +  +     +     +   VE A+ 
Sbjct: 269 ERPEEEVVEK----VLHYDGGIISFVEYMNLHKEPLFPKPIYFASS---INNSYVEVALQ 321

Query: 308 WCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMI 364
           +       I SY N I T EGGTH +G + A+T+ I  YA      +    ++  +D   
Sbjct: 322 YNNTYAENIYSYANNIATPEGGTHLTGFKSAITKVINDYARKYGFLKTNDKNLQGEDCRE 381

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
               I+SV + EP+F GQTK+KL + + +  VE+ + D F  +L +NP  A  ++E  I 
Sbjct: 382 GLTCIVSVKLPEPQFEGQTKSKLGNSEMRTLVESMINDKFPVFLEENPAIAKIIMEKCIS 441

Query: 425 RSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483
            S  R   +K RE+ R+      + LPGKL DC +N     E+FIVEGDSAGG+AK  R 
Sbjct: 442 ASRARDAAKKAREMTRRKNTFDSVSLPGKLVDCQENDPTLCEIFIVEGDSAGGNAKGGRE 501

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTD 543
           R  QA+LPL GK+LNV  +  +K+ NN ++  +V ALG     ++    LRY KVIIM D
Sbjct: 502 RKYQAILPLWGKMLNVERSRVDKVYNNSKLSPIVMALGTGIGDEFDLNKLRYNKVIIMAD 561

Query: 544 ADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEE 603
           ADVDGAHI +LLLTFF++ M  L+E+ H+F+  PPLF++    +  YA+DE   +KI +E
Sbjct: 562 ADVDGAHIRTLLLTFFFRHMKPLVEKGHVFIACPPLFKVENDNQVFYAYDEAGVEKIKQE 621

Query: 604 FKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLM 663
               G  K ++ R+KGLGEM A QL ET M+   R LLRV    DL   +    + N LM
Sbjct: 622 ---QGWDKPKLQRYKGLGEMDAEQLWETTMNPATRKLLRV----DLEDAQSADQTFNLLM 674

Query: 664 GTKADERFKFIQERASF--IDD 683
           G +   R  FIQ  A +  +D+
Sbjct: 675 GEEVKPRKDFIQANAKYALLDN 696


>gi|329114385|ref|ZP_08243147.1| DNA gyrase subunit B [Acetobacter pomorum DM001]
 gi|326696461|gb|EGE48140.1| DNA gyrase subunit B [Acetobacter pomorum DM001]
          Length = 679

 Score =  605 bits (1559), Expect = e-170,   Method: Composition-based stats.
 Identities = 359/685 (52%), Positives = 472/685 (68%), Gaps = 16/685 (2%)

Query: 6   IDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMY 65
            DLFS  PP  + S      +G+  D+       ++  YDAS+I +LEGLEPVR RPGMY
Sbjct: 2   SDLFSNTPPARKSS------TGKSRDAKPGTQADSAQAYDASAIEVLEGLEPVRRRPGMY 55

Query: 66  IGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFP 125
           IGGTDE ALHHL +E++DNAMDE +AG+AN I+V LD    LT+ DNGRGIPV+ HP+FP
Sbjct: 56  IGGTDESALHHLAAEILDNAMDEAVAGHANTIDVRLDTENRLTIRDNGRGIPVDPHPRFP 115

Query: 126 NKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFS 185
           ++S LE+ILTTLHAGGKF    Y  SGGLHGVG SVVNALS  + V +AR  T++ Q + 
Sbjct: 116 DRSALEVILTTLHAGGKFSGKAYATSGGLHGVGSSVVNALSTRMEVEIARDRTVWKQVYE 175

Query: 186 RGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
           RG P++ LEK     N+RGT+I+F+PDP+IFG    F  ARL ++ +SKA+L   V   W
Sbjct: 176 RGKPVTKLEKVGAAPNRRGTQISFQPDPEIFGTHV-FVPARLYRLCRSKAFLFRGVTIRW 234

Query: 246 SCDKEIAEK-YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT----EKKGTHRG 300
           SCD  + +     P +   +FPGGL   L  +L  ++ + + ++ G+        GT  G
Sbjct: 235 SCDPALIKTGDETPAEATLHFPGGLADSLTDELGPKAPLLTPLWAGEAPLPPAADGTDNG 294

Query: 301 TVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359
            VEWA+A+ E       SYCNTI T +GGTHE+G R AL +G++ + +    K+A +I +
Sbjct: 295 KVEWAVAFLENGSASLVSYCNTIPTPQGGTHETGFRNALVKGLRAWGDQRSIKKASAITA 354

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           +D++  + G LSVFIR+P+F GQTK KL S  A + VE ALRD FDH+L QNP +A  LL
Sbjct: 355 EDVLGMSAGRLSVFIRDPQFQGQTKEKLTSSTASKLVETALRDRFDHWLAQNPPQADTLL 414

Query: 420 EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
            + IER+EERLRR++Q+E  RK+A R+LRLPGKL DC++  A  TE+F+VEGDSAGGSAK
Sbjct: 415 GFAIERAEERLRRKEQKETPRKSATRRLRLPGKLTDCTKEFAPDTEIFLVEGDSAGGSAK 474

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
           QARNR  QAVLPLRGKILNVASA +EK+R NQ++ DL++ALGC +  ++    LRY +VI
Sbjct: 475 QARNRETQAVLPLRGKILNVASATAEKLRGNQELRDLIEALGCGSGDRFDLSKLRYGRVI 534

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599
           IMTDADVDGAHIASLL+TFFY+E+ +LI   HL+L  PPL+R+TQG KSVYA D+  + +
Sbjct: 535 IMTDADVDGAHIASLLMTFFYRELPELIRNGHLYLAQPPLYRLTQGAKSVYAMDDADRDR 594

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
            ++   K  +GKI++SRFKGLGEM    LK+T MD  +RTLLRV   +       T+  +
Sbjct: 595 KMKTEFK-ARGKIDVSRFKGLGEMPPGDLKQTTMDPKRRTLLRVITPQ--EDRLATRQRV 651

Query: 660 NKLMGTKADERFKFIQERASFIDDV 684
             LMG K + RF FIQE AS +DD+
Sbjct: 652 ESLMGRKPELRFAFIQEHASTVDDL 676


>gi|51598690|ref|YP_072878.1| DNA gyrase, subunit B [Borrelia garinii PBi]
 gi|51573261|gb|AAU07286.1| DNA gyrase, subunit B [Borrelia garinii PBi]
          Length = 634

 Score =  605 bits (1559), Expect = e-170,   Method: Composition-based stats.
 Identities = 247/647 (38%), Positives = 369/647 (57%), Gaps = 19/647 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY AS+I++L+GLE VR RPGMYIG      LHHL  EV+DN++DE +AG+ + I+V ++
Sbjct: 2   NYVASNIQVLKGLEAVRKRPGMYIGSVSVNGLHHLVYEVVDNSIDEALAGFCDRIDVVIN 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV+DNGRGIP + H +    S LE++LT LH+GGKF+  TY++SGGLHGVGISVV
Sbjct: 62  LDNTITVIDNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L V V R   IF Q FS+GIP S +E   +     GT++TF  D +IF     +
Sbjct: 121 NALSSFLEVYVNRDGKIFRQTFSKGIPTSKVEVVGESS-VTGTKVTFLADSEIFETL-DY 178

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L K  +  A+L+ ++       +   EK        FYF GG+K+++     +   
Sbjct: 179 NFDVLEKRLKELAFLNDKIYITIEDKRAGKEKSSK-----FYFEGGIKSFVDYLTNDSKA 233

Query: 283 ISSEIFTGKTE-KKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
             SE +              ++W  ++ +    I S+ N I T EGGTH  G R  LT+ 
Sbjct: 234 FQSESYYIDGFINDVIVNVGLKWTESYSDN---ILSFVNNINTREGGTHVMGFRSGLTKA 290

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + +  + ++   K   ++  DD       ++SV + EP+F GQTK+KL + + ++ VE  
Sbjct: 291 MNEAFKNSKISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIKKIVEII 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458
           + +     +  NP+E   +LE  I  +  R   RK R    +K A   L LPGKLADC+ 
Sbjct: 351 VYEHLLEIISSNPLEIDIILEKAIRAARAREAARKARESERKKNAFESLALPGKLADCAS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E++IVEGDSAGGSAK  RNR  QA+LPL GK+LNV     +K+  N +++ ++ 
Sbjct: 411 KNPSEREIYIVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           +LG      +    LRY KVIIM DADVDG+HI +LLL FF++ M DLIE  ++++  PP
Sbjct: 471 SLGAGVGKTFDITKLRYHKVIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYIYIAMPP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L++I    +  Y +DE+ K+K L+  +   +  I + R+KGLGEM  +QL ET MD  +R
Sbjct: 531 LYKIKYDNRIYYFYDEKEKEKFLDSIETKNRNNIFLQRYKGLGEMNPTQLWETTMDPARR 590

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +  + I+  +    + +     LMG   + R +FI++ A  + ++ 
Sbjct: 591 KMRLINIDDAI----EAEKIFVTLMGDLVEPRKEFIEQNALNVINLD 633


>gi|315221787|ref|ZP_07863699.1| DNA gyrase, B subunit [Streptococcus anginosus F0211]
 gi|315189020|gb|EFU22723.1| DNA gyrase, B subunit [Streptococcus anginosus F0211]
          Length = 648

 Score =  604 bits (1558), Expect = e-170,   Method: Composition-based stats.
 Identities = 259/654 (39%), Positives = 383/654 (58%), Gaps = 24/654 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
             +  +++YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A 
Sbjct: 5   NKELQAEDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFAT 64

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I+V ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLH
Sbjct: 65  HIQVFIEKDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTILHAGGKFGGGGYKVSGGLH 123

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS +L V V +   I  Q++ RG  ++ LE   +  ++ GT + F PDP+I
Sbjct: 124 GVGSSVVNALSTQLDVRVYKNGQIHFQEYRRGHVVADLEIIGET-DRTGTTVHFTPDPEI 182

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   FD  +L K  Q  A+L+  ++   +  +E  E     + +++++ GG+ +Y+Q 
Sbjct: 183 FTETVEFDFEKLNKRVQELAFLNRGLRISITDKREGLE-----QTKDYHYEGGIASYVQY 237

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             EN+ +I         E       TVE A+ +       + S+ N I T EGGTHE G 
Sbjct: 238 INENKDVIFENPIYTDGEMDDI---TVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGF 294

Query: 335 RVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR I  YA+  +  +    ++  +D+      ++SV    P+F GQTKTKL + + 
Sbjct: 295 RTALTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEV 354

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
            +       + F  +L++NP  A K++E  I  S+ R+  ++ RE   +K+ +    LPG
Sbjct: 355 VKITNRLFSEAFSDFLLENPAVAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS N  H TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N+
Sbjct: 415 KLADCSSNDPHETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  L  A+G    + +     RY+K++IMTDADVDGAHI +LLLT  Y+ M  ++E  +
Sbjct: 475 EIRSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGY 534

Query: 572 LFLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           +++  PP++ +  G++   Y       EE  Q  LE +   G+ K  I R+KGLGEM   
Sbjct: 535 VYIAQPPIYGVKVGSEVKEYIQPGANQEEELQLALERYS-EGRSKPSIQRYKGLGEMDDH 593

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET M+   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 594 QLWETTMNPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643


>gi|239916576|ref|YP_002956134.1| DNA gyrase subunit B [Micrococcus luteus NCTC 2665]
 gi|281414960|ref|ZP_06246702.1| DNA gyrase subunit B [Micrococcus luteus NCTC 2665]
 gi|239837783|gb|ACS29580.1| DNA gyrase subunit B [Micrococcus luteus NCTC 2665]
          Length = 720

 Score =  604 bits (1558), Expect = e-170,   Method: Composition-based stats.
 Identities = 258/723 (35%), Positives = 363/723 (50%), Gaps = 50/723 (6%)

Query: 7   DLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASD-----NYDASSIRILEGLEPVRMR 61
           D     P +   ++        +PD+         D      Y AS+I +LEGLE VR R
Sbjct: 3   DAMPENPAEEPTAASAAPNPEAVPDAVGQPEAPVKDRKVPGEYGASAITVLEGLEAVRKR 62

Query: 62  PGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENH 121
           PGMYIG T  + LHHL  EV+DN++DE +AGYA  I+V+L  +G + V D+GRGIPV+ H
Sbjct: 63  PGMYIGSTGPRGLHHLVYEVVDNSVDEALAGYATGIDVTLQADGGVRVADDGRGIPVDLH 122

Query: 122 PKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFS 181
           P    + T+E+++T LHAGGKF    Y +SGGLHGVGISVVNALS  +   V RQ  ++ 
Sbjct: 123 P-TEGRPTVEVVMTILHAGGKFGGGGYAVSGGLHGVGISVVNALSRRVDTEVRRQGHVWR 181

Query: 182 QKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241
             F+ G        K +  +  GT  TF PD +IF     FD   L    Q  A+L+  +
Sbjct: 182 MSFADGGVPQGELVKGEATDATGTVQTFYPDAEIFDS-IEFDYETLRARFQQMAFLNKGL 240

Query: 242 KTCWSCDK----------------------------EIAEKYGIPEKEEFYFPGGLKTYL 273
           +   + ++                            E AE+        + +  GL  Y+
Sbjct: 241 RITLTDERVQESNEVVDDEIAGEGAAGEDVAENGLAEDAEQEPQRRSVTYLYENGLLDYV 300

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRG---TVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
           Q     + +          E +    G    VE A+ W       + +Y NTI T EGGT
Sbjct: 301 QHLNSAKKVEYVHDDVIAFEAEDFSDGRSMAVEVAMQWTSAYSESVHTYANTINTHEGGT 360

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           HE G R ALT  + +YA   +    +  ++  +D+      ++SV + EP+F GQTKTKL
Sbjct: 361 HEEGFRAALTSLVNRYAREKEILKPKEDNLSGEDIREGLTAVISVKLSEPQFEGQTKTKL 420

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRK 446
            + +A+  V  A+ D    +  +NP  A +++   I  S  RL  RK R+  R+ + +  
Sbjct: 421 GNSEARGFVSKAVTDHLGDWFERNPGPAKEIIRKAIMASHARLAARKARDNARRKSPLES 480

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             +PGKLADCS       E++IVEGDSAGGSAKQ RN   QA+LPLRGKILNV  A  +K
Sbjct: 481 FGMPGKLADCSSKDPERCEVYIVEGDSAGGSAKQGRNPETQAILPLRGKILNVERARLDK 540

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
              N +I  ++ A G     ++    LRY K+++M DADVDG HI +LLLT  ++ M  L
Sbjct: 541 ALGNAEIQSMITAFGTNIGEEFDISKLRYHKIVLMADADVDGQHITTLLLTVLFRYMRPL 600

Query: 567 IEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGE 622
           IE  H+FL  PPL+RI        Y   +E +   +E     G    +   + R+KGLGE
Sbjct: 601 IEAGHVFLAQPPLYRIKWSNAPHDYVFSDEERDAAVEAGLAKGWRYPKDNGVQRYKGLGE 660

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           M   +L +T MD   RTLL+V +              + LMG   + R  FIQ+ A  I 
Sbjct: 661 MNYQELWDTTMDPEHRTLLQVTMED----AAAADAVFSMLMGEDVESRRTFIQQNAKDIR 716

Query: 683 DVG 685
            + 
Sbjct: 717 FLD 719


>gi|312863428|ref|ZP_07723666.1| DNA gyrase, B subunit [Streptococcus vestibularis F0396]
 gi|322516316|ref|ZP_08069243.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           vestibularis ATCC 49124]
 gi|311100964|gb|EFQ59169.1| DNA gyrase, B subunit [Streptococcus vestibularis F0396]
 gi|322125185|gb|EFX96572.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           vestibularis ATCC 49124]
          Length = 650

 Score =  604 bits (1558), Expect = e-170,   Method: Composition-based stats.
 Identities = 258/651 (39%), Positives = 380/651 (58%), Gaps = 22/651 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +  +  YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A  I
Sbjct: 9   EEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFATHI 68

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGV
Sbjct: 69  KVFIEPDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS +L V V +   I  Q++ RG+ ++ L    +     GT + F PDP+IF 
Sbjct: 128 GSSVVNALSTQLDVKVYKNGHIHFQEYKRGVVVADLAVIGETEKH-GTTVHFTPDPEIFQ 186

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   FD  +L K  Q  A+L+  ++   +  +E  E     +++ +++ GG+ +Y++   
Sbjct: 187 ETTEFDFGKLAKRIQELAFLNKGLRISITDKREGLE-----QEKHYHYEGGITSYVKYIN 241

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           EN+ +I  E      E  G    +VE A+ +       + S+ N I T EGGTHE G R 
Sbjct: 242 ENKDVIFDEPIYTDGEMDGI---SVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRT 298

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA   +   ++  ++  DD+      I+SV    P+F GQTKTKL + +  +
Sbjct: 299 ALTRVINDYARQNKILKEKDDNLTGDDVREGLTAIISVKHPNPQFEGQTKTKLGNSEVVK 358

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
                  +    +L++NP  A K++E  I  S+ R+  ++ RE   +K+ +    LPGKL
Sbjct: 359 ITNRLFSEALSRFLLENPAIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS N A   ELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I
Sbjct: 419 ADCSSNNAEMNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEI 478

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             L  A+G    S++     RY K++IMTDADVDGAHI +LLLT  Y+ M  ++E  +++
Sbjct: 479 RSLFTAMGTGFGSEFDVSKARYHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVY 538

Query: 574 LISPPLFRITQGTKSV-YAH---DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PP++ +  G++   Y     ++E K ++  E    G+ K  + R+KGLGEM   QL 
Sbjct: 539 IAQPPIYGVKVGSEIKEYIQPGANQEEKLRVALENYSVGRSKPTVQRYKGLGEMDDHQLW 598

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET MD   R + RV ++       +     + LMG K + R +FI+E A +
Sbjct: 599 ETTMDPENRLMARVSVDD----AAEADKIFDMLMGDKVEPRREFIEENAVY 645


>gi|293376332|ref|ZP_06622569.1| DNA topoisomerase IV, B subunit [Turicibacter sanguinis PC909]
 gi|292645021|gb|EFF63094.1| DNA topoisomerase IV, B subunit [Turicibacter sanguinis PC909]
          Length = 644

 Score =  604 bits (1558), Expect = e-170,   Method: Composition-based stats.
 Identities = 243/658 (36%), Positives = 364/658 (55%), Gaps = 38/658 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY+  SI++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DEV+AGY + I+V++ 
Sbjct: 6   NYNEDSIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAIDEVLAGYGDHIKVTIH 65

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            N  ++V D+GRG+P   H     K T E+I T LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 66  ENNSISVQDSGRGVPTGMHK--SGKPTPEVIFTVLHAGGKFGTGGYKTSGGLHGVGASVV 123

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS+ + VT+ R   ++ Q+F  G  P++ L+   K +   GT ++F+PDP+IF     
Sbjct: 124 NALSEWVEVTIKRDGNVYRQRFENGGHPVTGLDIIGKSKE-TGTLVSFKPDPEIFSTTV- 181

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +    L +  +  A+L   +K      +   E       E FY+  G+K+++    E + 
Sbjct: 182 YSFDILSERLRESAFLLKGLKIELIDLRNDKE-------ETFYYEDGIKSFVSYLNEGKD 234

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            +  ++   + E   +    V++A  +       I S+ N + T +GGTHE+G +  LTR
Sbjct: 235 TLH-DVVYFEGE---SQEIEVDFAFQYSGSYSENILSFVNNVRTKDGGTHETGAKAVLTR 290

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
               YA       ++  ++   D+      I+SV I E   +F GQTK KL + +A+  V
Sbjct: 291 IFNDYARRNGLLKEKEKNLEGADIREGLAAIVSVRIPENLLQFEGQTKAKLGTPEARSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKL 453
           +N + +    +  +N   AT+L++  I+ ++ R   RK RE  R    +K     L GKL
Sbjct: 351 DNVIAEKLTFFFEENGAVATQLIKKAIKAAQVREAARKAREDARSGKTKKKKETNLSGKL 410

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      ELF+VEGDSAGGSAK  RNR+ QA+LPLRGK++N   A  E I  N++I
Sbjct: 411 TPAQTKNPQKNELFLVEGDSAGGSAKLGRNRAFQAILPLRGKVINTEKAKMEDIFKNEEI 470

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++  +G    + +   D+ Y+KVIIMTDAD DGAHI  LLLTFF++ M +L+E   ++
Sbjct: 471 NTMIYTIGAGVGANFELSDVNYDKVIIMTDADTDGAHIQVLLLTFFFRYMRELVEAGKVY 530

Query: 574 LISPPLFRITQG--TK--SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G   K    YA  +E    ++ +  K       + R+KGLGEM A QL 
Sbjct: 531 IALPPLYKVSKGQGKKQVVEYAWTDEELGSVIAKVGK----GYMLQRYKGLGEMNADQLW 586

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF--IDDVG 685
           +T M+   RTL++V I        D    +  LMG K + R ++I++   F   DD  
Sbjct: 587 DTTMNPETRTLIQVSIED----AADADHRVTTLMGDKVEPRREWIEQNVDFTMEDDYD 640


>gi|259502126|ref|ZP_05745028.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus antri
           DSM 16041]
 gi|259169939|gb|EEW54434.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus antri
           DSM 16041]
          Length = 648

 Score =  604 bits (1558), Expect = e-170,   Method: Composition-based stats.
 Identities = 246/661 (37%), Positives = 375/661 (56%), Gaps = 20/661 (3%)

Query: 30  PDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEV 89
            D         +  YDAS I++L+GL+ VR RPGMYIG T  + LHHL  E++DN +DE 
Sbjct: 2   SDEQKETKAQLASEYDASQIQVLKGLDAVRKRPGMYIGSTSAQGLHHLVWEIVDNGIDEA 61

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
           +AG+   I V ++ +  +TV DNGRGIPV+   +   K  LE + T LHAGGKF    Y+
Sbjct: 62  LAGFCTEINVEVNPDNSITVRDNGRGIPVDIQGQ-TGKPALETVFTILHAGGKFGGGGYK 120

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRI 207
           +SGGLHGVG SVVNALS EL V VARQ   +   F  G   + ++        +  GT +
Sbjct: 121 VSGGLHGVGASVVNALSTELDVKVARQGKEYYMDFDHGHVKTAMKVINDHLPEDVHGTTV 180

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PDP IF +   ++   L    +  A+L+  +K      ++        ++++F++ G
Sbjct: 181 HFKPDPAIFRETTVYNIKTLTNRLRELAFLNKGLKITIEDKRDEDS-----QRQDFHYEG 235

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G++ Y+    E+++ +       + ++ G    TVE ++ + +    E+ ++ N I T E
Sbjct: 236 GIRHYVDYLNEDKTTLFEPPIYVEGKENGI---TVEVSLQYTDSYRSELLTFTNNIHTYE 292

Query: 327 GGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GGTHE+G ++ALTR I  Y       K   ++  DD+      ++S+   +P+F GQTKT
Sbjct: 293 GGTHETGFKMALTRVINDYGHKANILKSNETLSGDDVREGMTAVVSIKHPDPQFEGQTKT 352

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444
           KL + DA+   ++     F+ +L+++P EA +++E     S+ R+  ++ RE   +K+ +
Sbjct: 353 KLGNSDARTATDHVFAATFNRFLMEHPEEARQIIEKGQLASKARVAAKRAREVTRKKSGL 412

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLAD +      +ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  
Sbjct: 413 EISNLPGKLADNTSKDPSISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKATL 472

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           +++  N++I  L  ALG      +  E   Y K+IIMTDADVDGAHI +LLLT  Y+ M 
Sbjct: 473 DRVLANEEIRSLFTALGTGFGEDFDIEKANYHKLIIMTDADVDGAHIRTLLLTLIYRFMR 532

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
            +I   ++++  PPL+++ QG    Y   +E  ++++   +     K  I R+KGLGEM 
Sbjct: 533 PMITHGYVYIAQPPLYQVRQGKFVRYIESDEELEQVVSSLQPS--PKPVIQRYKGLGEMD 590

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           A QL ET MD   R LLRV+++      +   +    LMGTK   R  FI++ A F++++
Sbjct: 591 AEQLWETTMDPENRHLLRVQLDD----AEQANEIFPMLMGTKVGPRRDFIEQNAKFVENL 646

Query: 685 G 685
            
Sbjct: 647 D 647


>gi|62865972|gb|AAY17139.1| DNA gyrase B [Borrelia parkeri]
 gi|62865974|gb|AAY17140.1| DNA gyrase B [Borrelia parkeri]
 gi|62865976|gb|AAY17141.1| DNA gyrase B [Borrelia parkeri]
 gi|62865978|gb|AAY17142.1| DNA gyrase B [Borrelia parkeri]
 gi|62865980|gb|AAY17143.1| DNA gyrase B [Borrelia parkeri]
          Length = 634

 Score =  604 bits (1558), Expect = e-170,   Method: Composition-based stats.
 Identities = 243/647 (37%), Positives = 366/647 (56%), Gaps = 19/647 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y AS+I++L+GLE VR RPGMYIG      LHHL  EV+DN++DE +AG+ + IEV ++
Sbjct: 2   SYVASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLVYEVVDNSIDEALAGFCDKIEVVIN 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV DNGRGIP + H +    S LE++LT LH+GGKF+  TY++SGGLHGVGISVV
Sbjct: 62  SDNSVTVNDNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L V V+R    F Q +SRGIP S +E    V + RGT++TF  D +IF     +
Sbjct: 121 NALSSFLEVVVSRDGNFFKQTYSRGIPTSGVEIVG-VSSNRGTKVTFLADSEIFETL-EY 178

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L K  +  A+L+ +++      +   E++       FYF GG+K ++     N   
Sbjct: 179 DFETLSKRLRELAFLNDKIRISIEDKRLGKERFLE-----FYFEGGIKAFVDFITNNSKT 233

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           I SE +  +          V   + W E   +   S+ N I T EGGTH +G +    + 
Sbjct: 234 IQSESYFIEGTCDDVI---VSVGLKWTEGYSDNILSFVNNINTREGGTHVAGFKSGFLKA 290

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + +  + ++   K   ++  DD       ++S+ + EP+F GQTK KL +   ++ VE  
Sbjct: 291 MSEAFKDSKVSKKDVPNLTLDDFKEGLTAVISIKVPEPQFEGQTKGKLGNSYIKKIVETI 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458
           + +     +  N +E   +L   I  +  R   RK R    +K+A   L LPGKLADC+ 
Sbjct: 351 VHNELLKVIGDNLLEVDIILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCAS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E++IVEGDSAGGSAK  R+R  QA+LPL GK+LNV     +K+  N +++ ++ 
Sbjct: 411 KNPVEREIYIVEGDSAGGSAKMGRDRFYQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           +LG      +  E LRY K+IIM DADVDG+HI +LLLTFF++ M +LI+  H+++  PP
Sbjct: 471 SLGAGVGKNFYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIDNGHVYIAMPP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L++I       Y +D+  K+  L   +   + KI + R+KGLGEM  +QL ET M+   R
Sbjct: 531 LYKIKYENSVHYFYDDSEKEIFLSSIETGKRDKISLQRYKGLGEMNPTQLWETTMNPATR 590

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +  +EI+  +      ++    LMG   + R +FI++ A  + ++ 
Sbjct: 591 KMKLIEIDDAI----QAENIFVTLMGDDVEPRREFIEQNALDVVNLD 633


>gi|27379466|ref|NP_770995.1| DNA topoisomerase IV subunit B [Bradyrhizobium japonicum USDA 110]
 gi|27352618|dbj|BAC49620.1| DNA gyrase subunit B [Bradyrhizobium japonicum USDA 110]
          Length = 681

 Score =  604 bits (1558), Expect = e-170,   Method: Composition-based stats.
 Identities = 385/685 (56%), Positives = 498/685 (72%), Gaps = 20/685 (2%)

Query: 6   IDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMY 65
            D F    P+ + +++   ++G            A  +Y A+ I +LEGLEPVR RPGMY
Sbjct: 11  DDFFGGNEPKPRAAAKASPRAGG-----------AEADYTAADIEVLEGLEPVRRRPGMY 59

Query: 66  IGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFP 125
           IGGTDEKALHHLF+EVIDN+MDE +AG+A  I V L  +GFLTV DNGRGIP++ HPKFP
Sbjct: 60  IGGTDEKALHHLFAEVIDNSMDEALAGHATFIGVELSADGFLTVTDNGRGIPIDPHPKFP 119

Query: 126 NKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFS 185
            KS LE+I+ TLH+GGKFD+  YE SGGLHGVGISVVNALS  L V VAR   ++   F 
Sbjct: 120 KKSALEVIMCTLHSGGKFDSKVYETSGGLHGVGISVVNALSSLLEVEVARSQKLYRMTFE 179

Query: 186 RGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
           RG P   LE   K+ N+RGTR+ F+PD  IFG KA F   RL KMT+SKAYL G V+  W
Sbjct: 180 RGHPKGKLEDLGKINNRRGTRVRFKPDTDIFGAKAAFKPQRLFKMTRSKAYLFGGVEIRW 239

Query: 246 SCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
           +C  E+ +    +P +  F+FPGGLK YL   +   +L+  +IF+GK+ + G H G  EW
Sbjct: 240 NCAPELLKGIDDVPAEATFHFPGGLKDYLAAAIHADTLVHPDIFSGKSGRNGAH-GACEW 298

Query: 305 AIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDL 362
           A+AW  + +  ++SY NT+ T +GGTHESGLR AL RG+K +AE     KRA SI S+D+
Sbjct: 299 AVAWTADADGFLSSYTNTVPTPDGGTHESGLRSALLRGLKDHAERVGQGKRASSITSEDV 358

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
           M+ A  +LSVF+REPEF GQTK +L + +AQR VE A++DPFDH+L  NP +A KLL++V
Sbjct: 359 MVGAAVMLSVFVREPEFQGQTKDRLATAEAQRIVEQAMKDPFDHWLSGNPNQANKLLDFV 418

Query: 423 IERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           I+R+EERLRRR+++E  RKTA +KLRLPGKLADCS     G+ELFIVEGDSAGGSAKQAR
Sbjct: 419 IDRAEERLRRRQEKETARKTAGKKLRLPGKLADCSDAGTEGSELFIVEGDSAGGSAKQAR 478

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           +R  QAVLPLRGKILNVASAG +K+  N Q+ DLVQA+GC T +QYREEDLRY+++IIMT
Sbjct: 479 DRKTQAVLPLRGKILNVASAGKDKLTANAQLSDLVQAIGCGTLAQYREEDLRYQRIIIMT 538

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILE 602
           DADVDGAHIASLL+TFFY++M  LI++ HLFL  PPL+++T G+KSVYA D+ HK+ +++
Sbjct: 539 DADVDGAHIASLLITFFYRQMPRLIDEGHLFLAVPPLYKLTHGSKSVYARDDAHKEALIK 598

Query: 603 EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKL 662
             + +   K+E++RFKGLGEM+ +QLKET MD  KRT+L+V +  D      T DS+ +L
Sbjct: 599 S-EFNANAKVEVNRFKGLGEMMPAQLKETTMDPAKRTMLKVVLLADDRDT--TADSVERL 655

Query: 663 MGTKADERFKFIQERASFIDD--VG 685
           MGTKA+ RF FI ++A F ++  + 
Sbjct: 656 MGTKAEARFAFISDKAEFANEDLLD 680


>gi|50364821|ref|YP_053246.1| DNA gyrase subunit B [Mesoplasma florum L1]
 gi|50363377|gb|AAT75362.1| DNA gyrase subunit B [Mesoplasma florum L1]
          Length = 635

 Score =  604 bits (1558), Expect = e-170,   Method: Composition-based stats.
 Identities = 261/650 (40%), Positives = 376/650 (57%), Gaps = 21/650 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A  NY A SI++L+GLE VR RPGMYIG T +  LHHL  E++DN++DE +AG+AN I +
Sbjct: 2   AEQNYGAESIKVLKGLEAVRKRPGMYIGSTSKAGLHHLVWEIMDNSVDEAMAGFANKIIL 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++   G + V DNGRGIPV        KS LE++ T LHAGGKFD+ +Y+ISGGLHGVG 
Sbjct: 62  TITKEGEIIVQDNGRGIPVGIQA-DSGKSALELVFTQLHAGGKFDSDSYKISGGLHGVGA 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS  + V V R+  I  Q FS G       +     N+ GT + F+PDP+IF + 
Sbjct: 121 SVVNALSLYVDVQVKREGKIHHQVFSGGGTQQTEIEIIGETNETGTIVRFKPDPEIFLEG 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             FD   +    +  +YL+  +    +  +       I +  E++FP G+  Y++ K E 
Sbjct: 181 TEFDYETIRNKVKQLSYLNKGLVIELNDLR-------IDKHVEYHFPNGILDYVKEKNET 233

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVAL 338
           +  I+  IF    +        VE A+ +  E  E   ++ N I T EGGTHE GLR +L
Sbjct: 234 KVKINPSIFYVDDKHDDI---EVEVALQYNAEYQENLITFVNNINTHEGGTHEDGLRQSL 290

Query: 339 TRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
            R I +YAE   T NK A     DD+    V I+S+   +P++ GQTKTKL + DA++ V
Sbjct: 291 VRVINRYAEKVATGNKPAAKYSWDDIKEGMVCIVSIRHTDPQYEGQTKTKLANPDAKKAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLAD 455
           +  + D F+ +L+++P +A  +++      + R+  ++ RE   RK+A+    LPGKLAD
Sbjct: 351 DAVVGDAFEEFLLKSPEDAKAIIDKNANAQKARIAAQRAREETRRKSALDTFSLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C        EL++VEGDSAGGSAK  RNR  QA+LPLRGK+LNV      +   N +I  
Sbjct: 411 CESKDPEIAELYLVEGDSAGGSAKTGRNRRFQAILPLRGKVLNVERVAEVRAFANNEIKS 470

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +V A+G   +       LRY K++IMTDADVDGAHI +LLLTFFY+ M  L+   H+++ 
Sbjct: 471 IVTAIGTGIKEDIDLSKLRYGKIVIMTDADVDGAHIRTLLLTFFYRYMKQLVVDGHVYIA 530

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL++I  G K  YA+ +   +++  +       +  I R+KGLGEM   QL ET MD 
Sbjct: 531 QPPLYKIEAGKKVAYAYSDVELEEL--KAGDFKDSRFTIQRYKGLGEMDPIQLWETTMDP 588

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            KRT+L++++           +  + LMG   + R  +IQE A F++++ 
Sbjct: 589 EKRTMLQIKLED----AAIANEVFSDLMGEDPELRRNYIQENAEFVENID 634


>gi|62865970|gb|AAY17138.1| DNA gyrase B [Borrelia parkeri]
          Length = 634

 Score =  604 bits (1558), Expect = e-170,   Method: Composition-based stats.
 Identities = 242/647 (37%), Positives = 367/647 (56%), Gaps = 19/647 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y AS+I++L+GLE VR RPGMYIG      LHHL  EV+DN++DE +AG+ + IEV ++
Sbjct: 2   SYVASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLVYEVVDNSIDEALAGFCDKIEVVIN 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV DNGRGIP + H +    S LE++LT LH+GGKF+  TY++SGGLHGVGISVV
Sbjct: 62  SDNSVTVNDNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L V V+R    F Q +SRGIP S +E    V + RGT++TF  D +IF     +
Sbjct: 121 NALSSFLEVVVSRDGNFFKQTYSRGIPTSGVEIVG-VSSNRGTKVTFLADSEIFETL-EY 178

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L K  +  A+L+ +++      +   E++       FYF GG+K ++     N   
Sbjct: 179 DFETLSKRLRELAFLNDKIRISIEDKRLGKERFLE-----FYFEGGIKAFVDFITNNSKT 233

Query: 283 ISSEIFTGKT-EKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
           I SE +  +           ++W   + +    I S+ N I T EGGTH +G +    + 
Sbjct: 234 IQSESYFIEGTYDDVIVSVGLKWTEGYSDN---ILSFVNNINTREGGTHVAGFKSGFLKA 290

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + +  + ++   K   ++  DD       ++S+ + EP+F GQTK KL +   ++ VE  
Sbjct: 291 MSEAFKDSKVSKKDVPNLTLDDFKEGLTAVISIKVPEPQFEGQTKGKLGNSYIKKIVETI 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458
           + +     +  N +E   +L   I  +  R   RK R    +K+A   L LPGKLADC+ 
Sbjct: 351 VHNELLKVIGDNLLEVDIILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCAS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E++IVEGDSAGGSAK  R+R  QA+LPL GK+LNV     +K+  N +++ ++ 
Sbjct: 411 KNPVEREIYIVEGDSAGGSAKMGRDRFYQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           +LG      +  E LRY K+IIM DADVDG+HI +LLLTFF++ M +LI+  H+++  PP
Sbjct: 471 SLGAGVGKNFYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIDNGHVYIAMPP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L++I       Y +D+  K+  L   +   + KI + R+KGLGEM  +QL ET M+   R
Sbjct: 531 LYKIKYENSVHYFYDDSEKEIFLSSIETGKRDKISLQRYKGLGEMNPTQLWETTMNPATR 590

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +  +EI+  +      ++    LMG   + R +FI++ A  + ++ 
Sbjct: 591 KMKLIEIDDAI----QAENIFVTLMGDDVEPRREFIEQNALDVVNLD 633


>gi|228470217|ref|ZP_04055124.1| DNA gyrase, B subunit [Porphyromonas uenonis 60-3]
 gi|228308168|gb|EEK17031.1| DNA gyrase, B subunit [Porphyromonas uenonis 60-3]
          Length = 657

 Score =  604 bits (1558), Expect = e-170,   Method: Composition-based stats.
 Identities = 262/669 (39%), Positives = 377/669 (56%), Gaps = 21/669 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86
               +            Y ASSI++LEGLE VR RP MYIG   EK LHHL  EV+DN++
Sbjct: 1   MSEQEKDIKTAPQDKGAYSASSIQVLEGLEAVRKRPAMYIGDISEKGLHHLVYEVVDNSI 60

Query: 87  DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146
           DE +AGY   + V +  +  + V DNGRGIPV+ H K   KS LE+++T LHAGGKFD  
Sbjct: 61  DEALAGYCTEVLVEILPDNSIQVTDNGRGIPVDMHAK-EGKSALEVVMTVLHAGGKFDKG 119

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+S VNALS+ L   V R   I+ QK+SRG PL+ +E   +  +  GTR
Sbjct: 120 SYKVSGGLHGVGVSCVNALSESLIAEVHRDGKIYRQKYSRGKPLTGVEVVGEASD-TGTR 178

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           ITF+PD  IF +   + +  L    +  +YL+  +       +   E+   P+   FY  
Sbjct: 179 ITFKPDDTIFRETI-YSSDTLSHRLRELSYLNAGLHLKLIDHRVHDEEGQ-PKSWTFYSE 236

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
            GL  +++     +  +  ++    TEK+G     VE A+ +       + +Y N I T 
Sbjct: 237 DGLSEFVRYVDGAKESLIHDVIHHTTEKQGVP---VEVALTYNTSYQENVYTYVNDIHTI 293

Query: 326 EGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           EGGTH +G R  LTR +KKYA  +    K    I  DD       I+SV + EP+F GQT
Sbjct: 294 EGGTHLTGFRRGLTRTLKKYATDSHLLDKIKEEISGDDFREGLTAIVSVKVAEPQFEGQT 353

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKT 442
           KTKL + +    V+ A+ +  + YL ++P+EA  +++ VI         RR +  V RK+
Sbjct: 354 KTKLGNSEIVSVVDAAVSEALEIYLEEHPLEAKLIVDKVILAAQARHAARRARELVQRKS 413

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
            +    LPGKLADCS       ELFIVEGDSAGG+AKQ R+   QA+LPLRGKILNV  A
Sbjct: 414 PLTGGGLPGKLADCSSKDPSECELFIVEGDSAGGTAKQGRDSKYQAILPLRGKILNVEKA 473

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLT 557
              +I +N +I ++  ALG    ++   +      LRY K+IIMTDADVDGAHIA+L+LT
Sbjct: 474 MQHRILDNAEIKNIYTALGVTVGTEEDSKALNLSKLRYHKIIIMTDADVDGAHIATLILT 533

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
           FF++ M  LIE  ++++ +PPL+   +     Y   ++ K   + ++    + +I+I R+
Sbjct: 534 FFFRNMRPLIENGYVYIANPPLYLCKKDRIEEYCWTDDEKANFVTKYGNGQENRIKIQRY 593

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           KGLGEM   QL +T M+   RTL +V I+    +L       + LM    + R +FI+E 
Sbjct: 594 KGLGEMNDIQLWDTTMNPQTRTLRKVTID----NLASADSVFSMLMSEDVEPRREFIEEN 649

Query: 678 ASFIDDVGT 686
           A++  ++  
Sbjct: 650 ATYA-NIDA 657


>gi|114798323|ref|YP_759701.1| DNA topoisomerase IV subunit B [Hyphomonas neptunium ATCC 15444]
 gi|114738497|gb|ABI76622.1| DNA topoisomerase IV, B subunit [Hyphomonas neptunium ATCC 15444]
          Length = 665

 Score =  604 bits (1558), Expect = e-170,   Method: Composition-based stats.
 Identities = 356/654 (54%), Positives = 461/654 (70%), Gaps = 10/654 (1%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + +  Y A  I +LEGLEPVR RPGMYIGGTDE+A HHLF+EV+DNAMDE +AGYAN I+
Sbjct: 14  AGTAGYSAKDIEVLEGLEPVRKRPGMYIGGTDERAWHHLFAEVLDNAMDEAVAGYANRID 73

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           + LD +GFLTVVDNGRGIP++ HPKFP KS LE+I+TTLH+GGKF +  Y  +GGLHGVG
Sbjct: 74  IKLDADGFLTVVDNGRGIPIDPHPKFPKKSALEVIMTTLHSGGKFSDKAYSTAGGLHGVG 133

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           ISVVNALS+ + V VAR  T++ Q FSRG+PL  L+K     N+RGT + F+PD +IFGD
Sbjct: 134 ISVVNALSELVEVEVARDRTLYRQDFSRGLPLGKLQKVGAAPNRRGTSVRFKPDFQIFGD 193

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE-IAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           K  +   RL +M +SKAYL   V+  WSCD E + E   +P +    +P GL   L    
Sbjct: 194 KLRWRPQRLFQMARSKAYLFRGVEVRWSCDPELLPEDSKVPAEAVLSYPNGLADQLTEVF 253

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-----EENPEITSYCNTILTDEGGTHES 332
            ++S I+   FTG         G VEWAIAW      E +    SYCNTI T EGGTHE+
Sbjct: 254 GDKSTITETPFTGLV--DMGAEGKVEWAIAWTQAGFGEADGFARSYCNTIPTPEGGTHEA 311

Query: 333 GLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           G R A+T+GI+ + +LT NK+A  + ++D+M  +  +LSVFIR PEF GQTK KL S  A
Sbjct: 312 GFRSAITKGIRNFGDLTGNKKAAEVTAEDVMGHSGLLLSVFIRGPEFVGQTKDKLSSTHA 371

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
            R VENA+RD FDH+L  +P EA KLL W I+R++ER +RRK +E++RK+A +KLRLPGK
Sbjct: 372 FRLVENAVRDHFDHWLAGSPKEANKLLGWAIDRADERAKRRKAKEISRKSATKKLRLPGK 431

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS     GTELF+VEGDSAGGSAKQARNR  QA+LPLRGKILNV SA  +K+  NQ+
Sbjct: 432 LADCSAKGPEGTELFLVEGDSAGGSAKQARNRETQAILPLRGKILNVESASDDKLMGNQE 491

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           + DL  ALG     ++  +DLRYE++IIMTDADVDGAHIA+LL+TFFY+    LIE   L
Sbjct: 492 LADLSLALGTELGRKFNIDDLRYERIIIMTDADVDGAHIAALLITFFYRLTPGLIESGRL 551

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           +L  PPLF+++      YA D+  + +I++E  K G  K+E++RFKGLGEM  +QLKET 
Sbjct: 552 YLALPPLFKLSNKGNIHYAMDDADRARIMKEHFK-GNQKVEMTRFKGLGEMNPAQLKETT 610

Query: 633 MDANKRTLLRVEINKDLNSLK-DTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           M+ + RTL RV +   ++ L+ +  D IN LMG KA+ RF+FIQE A+F++++ 
Sbjct: 611 MNPSSRTLARVTLPAAMDDLEINPADLINTLMGKKAELRFRFIQENAAFVEELD 664


>gi|325961456|ref|YP_004239362.1| DNA gyrase subunit B [Arthrobacter phenanthrenivorans Sphe3]
 gi|323467543|gb|ADX71228.1| DNA gyrase subunit B [Arthrobacter phenanthrenivorans Sphe3]
          Length = 695

 Score =  604 bits (1558), Expect = e-170,   Method: Composition-based stats.
 Identities = 251/711 (35%), Positives = 372/711 (52%), Gaps = 43/711 (6%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           M +D+ D+ +        S  +  ++ + P +PA   +     Y AS I +LEGLE VR 
Sbjct: 1   MANDNTDILAA------ESGIEDARTPDTPAAPATQRE-----YGASDITVLEGLEAVRK 49

Query: 61  RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           RPGMYIG T  + LHHL  EV+DN++DE +AGY   IEV L  +G + VVD+GRGIPV+ 
Sbjct: 50  RPGMYIGSTGPRGLHHLVYEVVDNSVDEALAGYCTHIEVVLQADGGVKVVDDGRGIPVDM 109

Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
           HP   +K T+E+++T LHAGGKF    Y +SGGLHGVGISVVNALS  +   V RQ  ++
Sbjct: 110 HP-TEHKPTVEVVMTILHAGGKFGGGGYAVSGGLHGVGISVVNALSSRVDTEVRRQGHVW 168

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
              F+ G        K +  +  GT  TF PDP IF     FD   L    Q  A+L+  
Sbjct: 169 RMSFADGGKPQGSLVKGEETDLTGTTQTFYPDPAIFES-TEFDFETLRARFQQMAFLNKG 227

Query: 241 VKTCWSCDKEIA-----------------EKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
           ++   + ++  A                 E         + +  GL  Y++     + + 
Sbjct: 228 LRITLTDERTSAEEEDDADLDLDGVVTEGEVKAEHRTVVYQYDEGLLDYVKHLNSGKKVD 287

Query: 284 SSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
                    E +    +  +E A+ W       + +Y NTI T EGGTHE G R A+T  
Sbjct: 288 VVHEDVIAFETEDKDRKIALEMAMQWTNAYSESVHTYANTINTHEGGTHEEGFRAAMTSL 347

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I +YA       ++  ++  DD+      ++SV + EP+F GQTKTKL + + +  V+  
Sbjct: 348 INRYAREKGIIKEKDDNLTGDDIREGLTAVISVKLAEPQFEGQTKTKLGNSEVKGFVQRV 407

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458
           + D    +L +NP  A  ++   I  ++ R+  RK R+  R+ + +    +PGKL+DCS 
Sbjct: 408 VTDGLGDWLERNPGPARDVIRKAISAAQARMAARKARDNARRKSPLESFGMPGKLSDCSS 467

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E++IVEGDSAGGSAK+ RN   QA+LPLRGKILNV  A  +K   N ++  ++ 
Sbjct: 468 KDPERCEVYIVEGDSAGGSAKRGRNPETQAILPLRGKILNVERARLDKALGNAEVQSMIT 527

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A G      +    LRY K+++M DADVDG HI +LL+T  ++ M  LIE  +++L  PP
Sbjct: 528 AFGTGIGEDFDLSKLRYHKIVLMADADVDGQHITTLLMTLLFRYMRPLIENGYVYLAQPP 587

Query: 579 LFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMD 634
           L+RI     +  Y + +  +   L   +  G+   +   I R+KGLGEM  ++L +T MD
Sbjct: 588 LYRIKWSNAAHDYVYSDRERDAKLVAGQAAGRRIPKDNGIQRYKGLGEMDYTELWDTTMD 647

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            + RTLL+V ++  L          + LMG   + R  FIQ+ A  +  + 
Sbjct: 648 PDNRTLLQVTMDDAL----AADQIFSVLMGEDVESRRNFIQQNAKDVRFLD 694


>gi|125717721|ref|YP_001034854.1| DNA gyrase subunit B [Streptococcus sanguinis SK36]
 gi|323351846|ref|ZP_08087497.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           sanguinis VMC66]
 gi|125497638|gb|ABN44304.1| DNA gyrase, putative [Streptococcus sanguinis SK36]
 gi|322121903|gb|EFX93635.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           sanguinis VMC66]
 gi|324990928|gb|EGC22863.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           sanguinis SK353]
 gi|324993188|gb|EGC25108.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           sanguinis SK405]
 gi|324995509|gb|EGC27421.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           sanguinis SK678]
 gi|325689965|gb|EGD31969.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           sanguinis SK115]
 gi|325694221|gb|EGD36137.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           sanguinis SK150]
 gi|327461458|gb|EGF07789.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           sanguinis SK1]
 gi|327473763|gb|EGF19181.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           sanguinis SK408]
          Length = 649

 Score =  604 bits (1558), Expect = e-170,   Method: Composition-based stats.
 Identities = 257/658 (39%), Positives = 379/658 (57%), Gaps = 24/658 (3%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +        +  YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +A
Sbjct: 2   TEEKQQDIQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+A+ I+V ++ +  +TVVDNGRGIPV+   K   +  +E + T LHAGGKF    Y++S
Sbjct: 62  GFASHIQVFIEKDNSITVVDNGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVS 120

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG SVVNALS +L V V +   I  Q++ RG  ++ LE   +  ++ GT + F P
Sbjct: 121 GGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEYRRGHVVADLEIIGET-DRTGTTVHFTP 179

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           DP+IF +   FD  +L K  Q  A+L+  ++   +  ++  E     + +++++ GG+ +
Sbjct: 180 DPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKRDGME-----QVKDYHYEGGIAS 234

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           Y+Q   EN+ +I         E       TVE A+ +       + S+ N I T EGGTH
Sbjct: 235 YVQYINENKDVIFETPIYTDGEMDDI---TVEVAMQYTTGYHETVMSFANNIHTHEGGTH 291

Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           E G R ALTR I  YA+  +  +    ++  +D+      ++SV    P+F GQTKTKL 
Sbjct: 292 EQGFRTALTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLG 351

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447
           + +  +       + F  +L++NP  A K++E  I  S+ R+  ++ RE   +K+ +   
Sbjct: 352 NSEVVKITNRLFSEAFSDFLLENPAVARKIVEKGILASKARIAAKRAREVTRKKSGLEIS 411

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADCS N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI
Sbjct: 412 NLPGKLADCSSNDPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKI 471

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N++I  L  A+G    + +     RY+K++IMTDADVDGAHI +LLLT  Y+ M  ++
Sbjct: 472 LANEEIRSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVL 531

Query: 568 EQKHLFLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGE 622
           E   +++  PP++ +  G++   Y       EE  Q  L  +   G+ K  I R+KGLGE
Sbjct: 532 EAGFVYIAQPPIYGVKVGSEVKEYIQPGANQEEELQAALARYS-EGRSKPTIQRYKGLGE 590

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           M   QL ET M+   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 591 MDDHQLWETTMNPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 644


>gi|332177400|gb|AEE13090.1| DNA gyrase, B subunit [Porphyromonas asaccharolytica DSM 20707]
          Length = 657

 Score =  604 bits (1558), Expect = e-170,   Method: Composition-based stats.
 Identities = 263/669 (39%), Positives = 376/669 (56%), Gaps = 21/669 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86
               +            Y ASSI++LEGLE VR RP MYIG   EK LHHL  EV+DN++
Sbjct: 1   MSEQEKDIMTTPQEKGAYSASSIQVLEGLEAVRKRPAMYIGDISEKGLHHLVYEVVDNSI 60

Query: 87  DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146
           DE +AGY   + V +  +  + V DNGRGIPV+ H K   KS LE+++T LHAGGKFD  
Sbjct: 61  DEALAGYCTEVLVEILSDNSIQVTDNGRGIPVDMHAK-EGKSALEVVMTVLHAGGKFDKG 119

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+S VNALS+ L   V R   I+ Q++SRG PL+ +E   K  +  GTR
Sbjct: 120 SYKVSGGLHGVGVSCVNALSESLIAEVHRDGKIYRQEYSRGKPLTGVEVVGKADD-TGTR 178

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           ITF+PD  IF +   + +  L    +  +YL+  +       +   E+   P+   FY  
Sbjct: 179 ITFKPDDTIFRETI-YSSETLSHRLRELSYLNAGLHLKLIDHRVHDEEGQ-PKSWIFYSE 236

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
            GL  +++     +  +  ++    TEK+G     VE A+ +       + +Y N I T 
Sbjct: 237 NGLSEFVRYVDGAKESLIHDVIHHTTEKQGVP---VEVALTYNTSYQENVYTYVNDIHTI 293

Query: 326 EGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           EGGTH +G R  LTR +KKYA  +    K    I  DD       I+SV + EP+F GQT
Sbjct: 294 EGGTHLTGFRRGLTRTLKKYATDSHLLDKIKEEISGDDFREGLTAIVSVKVAEPQFEGQT 353

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKT 442
           KTKL + +    V+ A+ +  + YL ++P EA  +++ VI         RR +  V RK+
Sbjct: 354 KTKLGNSEIVGVVDAAVSEALEIYLEEHPTEAKLIVDKVILAAQARHAARRARELVQRKS 413

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
            +    LPGKLADCS       ELFIVEGDSAGG+AKQ R+   QA+LPLRGKILNV  A
Sbjct: 414 PLTGGGLPGKLADCSSKDPSECELFIVEGDSAGGTAKQGRDSKYQAILPLRGKILNVEKA 473

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLT 557
              +I +N +I ++  ALG    ++   +      LRY K+IIMTDADVDGAHIA+L+LT
Sbjct: 474 MQHRILDNAEIKNIYTALGVTVGTEEDSKALNLSKLRYHKIIIMTDADVDGAHIATLILT 533

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
           FF++ M  LIE  ++++ +PPL+   +     Y   +E K   + ++    + +I+I R+
Sbjct: 534 FFFRNMRPLIENGYVYIANPPLYLCKKDRIEEYCWTDEQKSDFVTKYGNGQENRIKIQRY 593

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           KGLGEM   QL +T M+   RTL +V I+    +L       + LM    + R +FI+E 
Sbjct: 594 KGLGEMNDVQLWDTTMNPQTRTLRQVTID----NLASADSVFSMLMSEDVEPRREFIEEN 649

Query: 678 ASFIDDVGT 686
           A++  ++  
Sbjct: 650 ATYA-NIDA 657


>gi|327459890|gb|EGF06230.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           sanguinis SK1057]
          Length = 649

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 257/658 (39%), Positives = 379/658 (57%), Gaps = 24/658 (3%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +        +  YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +A
Sbjct: 2   TEEKQQDIQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+A+ I+V ++ +  +TVVDNGRGIPV+   K   +  +E + T LHAGGKF    Y++S
Sbjct: 62  GFASHIQVFIEKDNSITVVDNGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVS 120

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG SVVNALS +L V V +   I  Q++ RG  ++ LE   +  ++ GT + F P
Sbjct: 121 GGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEYRRGHVVADLEIIGET-DRTGTTVHFTP 179

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           DP+IF +   FD  +L K  Q  A+L+  ++   +  ++  E     + +++++ GG+ +
Sbjct: 180 DPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKRDGME-----QAKDYHYEGGIAS 234

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           Y+Q   EN+ +I         E       TVE A+ +       + S+ N I T EGGTH
Sbjct: 235 YVQYINENKDVIFETPIYTDGEMDDI---TVEVAMQYTTGYHETVMSFANNIHTHEGGTH 291

Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           E G R ALTR I  YA+  +  +    ++  +D+      ++SV    P+F GQTKTKL 
Sbjct: 292 EQGFRTALTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLG 351

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447
           + +  +       + F  +L++NP  A K++E  I  S+ R+  ++ RE   +K+ +   
Sbjct: 352 NSEVVKITNRLFSEAFSDFLLENPAVARKIVEKGILASKARIAAKRAREVTRKKSGLEIS 411

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADCS N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI
Sbjct: 412 NLPGKLADCSSNDPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKI 471

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N++I  L  A+G    + +     RY+K++IMTDADVDGAHI +LLLT  Y+ M  ++
Sbjct: 472 LANEEIRSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVL 531

Query: 568 EQKHLFLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGE 622
           E   +++  PP++ +  G++   Y       EE  Q  L  +   G+ K  I R+KGLGE
Sbjct: 532 EAGFVYIAQPPIYGVKVGSEVKEYIQPGANQEEELQAALARYS-EGRSKPTIQRYKGLGE 590

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           M   QL ET M+   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 591 MDDHQLWETTMNPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 644


>gi|319939445|ref|ZP_08013805.1| DNA gyrase subunit B [Streptococcus anginosus 1_2_62CV]
 gi|319811431|gb|EFW07726.1| DNA gyrase subunit B [Streptococcus anginosus 1_2_62CV]
          Length = 648

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 259/654 (39%), Positives = 382/654 (58%), Gaps = 24/654 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
             +  + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A 
Sbjct: 5   NKELQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFAT 64

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I+V ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLH
Sbjct: 65  HIQVFIEKDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTILHAGGKFGGGGYKVSGGLH 123

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS +L V V +   I  Q++ RG  ++ LE   +  ++ GT + F PDP+I
Sbjct: 124 GVGSSVVNALSTQLDVRVYKNGQIHFQEYRRGHVVADLEIIGET-DRTGTTVHFTPDPEI 182

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   FD  +L K  Q  A+L+  ++   +  +E  E     + +++++ GG+ +Y+Q 
Sbjct: 183 FTETVEFDFEKLNKRVQELAFLNRGLRISITDKREGLE-----QTKDYHYEGGIASYVQY 237

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             EN+ +I         E       TVE A+ +       + S+ N I T EGGTHE G 
Sbjct: 238 INENKDVIFENPIYTDGEMDDI---TVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGF 294

Query: 335 RVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR I  YA+  +  +    ++  +D+      ++SV    P+F GQTKTKL + + 
Sbjct: 295 RTALTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEV 354

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
            +       + F  +L++NP  A K++E  I  S+ R+  ++ RE   +K+ +    LPG
Sbjct: 355 VKITNRLFSEAFSDFLLENPAVAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS N  H TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N+
Sbjct: 415 KLADCSSNDPHETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  L  A+G    + +     RY+K++IMTDADVDGAHI +LLLT  Y+ M  ++E  +
Sbjct: 475 EIRSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGY 534

Query: 572 LFLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           +++  PP++ +  G++   Y       EE  Q  LE +   G+ K  I R+KGLGEM   
Sbjct: 535 VYIAQPPIYGVKVGSEVKEYIQPGANQEEELQLALERYS-EGRSKPSIQRYKGLGEMDDH 593

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET M+   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 594 QLWETTMNPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643


>gi|304383575|ref|ZP_07366034.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella marshii
           DSM 16973]
 gi|304335099|gb|EFM01370.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella marshii
           DSM 16973]
          Length = 657

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 259/669 (38%), Positives = 386/669 (57%), Gaps = 30/669 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
             NQ+  +NY AS+I++LEGLE VR RP MYIG   EK LHHL +E +DN++DE +AG+ 
Sbjct: 2   AENQTKENNYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLVNETVDNSIDEAMAGFC 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             IEV ++ +  +TV D+GRGIPV+ H K    S LE+++T LHAGGKFD  +Y++SGGL
Sbjct: 62  KNIEVIINEDNSITVQDDGRGIPVDEHEKLHK-SALEVVMTVLHAGGKFDKGSYKVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+S VNALS  +   V R   I+ Q++ +G PL P++       +RGTR  F PD  
Sbjct: 121 HGVGVSCVNALSSHMLSQVFRDGKIYQQEYEKGKPLYPVKVVG-TTERRGTRQQFWPDAT 179

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     +    +    +  AYL+  +K      +   ++ G   +E F+   GLK +++
Sbjct: 180 IFTT-TKYKWDIIANRMRELAYLNAGIKITLKDMR--PDEEGKLREETFHAEDGLKEFVR 236

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               +R+ +  ++   KTEK+G     +E A+ +  +    I SY N I T EGGTH +G
Sbjct: 237 YVDRHRTHLFDDVIYLKTEKQGIP---IEVAVMYNNDYSENIHSYVNNINTIEGGTHLTG 293

Query: 334 LRVALTRGIKKYAE------LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
            R+ALTR +K YA+          K  I I  +D       ++S+ + EP+F GQTKTKL
Sbjct: 294 FRMALTRTLKTYADADPVISKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKL 353

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRK 446
            + +    V+ A+ +   +YL ++P EA  + + V+  +  R+  RK RE   RK  +  
Sbjct: 354 GNSEVSGAVQQAVGEALSNYLEEHPKEAKLICDKVVLAATARIAARKARESVQRKNVMSG 413

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADCS       E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV      K
Sbjct: 414 GGLPGKLADCSNRDPKKCEIFLVEGDSAGGSAKQGRDRYTQAILPLKGKILNVEKVQWHK 473

Query: 507 IRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           +   + +M+++Q++G R         +   + LRY+K+IIMTDADVDG+HI +L++T FY
Sbjct: 474 VFEAESVMNIIQSIGVRFGVEGEGDKEANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFY 533

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKK--HGKGKIEISRF 617
           + M  +I++ HL++ +PPL+  T   K   Y + E+ +Q  L+++         I   R+
Sbjct: 534 RFMPRVIQEGHLYIATPPLYLCTYKNKVKEYCYTEQQRQAFLDKYGDGVEDGKSIHTQRY 593

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           KGLGEM   QL ET MD N R L +V I     +     +  + LMG   + R +FI++ 
Sbjct: 594 KGLGEMNPEQLWETTMDPNTRLLKQVNIE----NAAKADEIFSMLMGDDVEPRREFIEQN 649

Query: 678 ASFIDDVGT 686
           A++  ++  
Sbjct: 650 ATYA-NIDA 657


>gi|220910789|ref|YP_002486098.1| DNA gyrase subunit B [Arthrobacter chlorophenolicus A6]
 gi|219857667|gb|ACL38009.1| DNA gyrase, B subunit [Arthrobacter chlorophenolicus A6]
          Length = 695

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 244/711 (34%), Positives = 364/711 (51%), Gaps = 43/711 (6%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           M +D+ D+ +  P                P             Y AS I +LEGLE VR 
Sbjct: 1   MANDNTDILAVDPAAGDAGGPDATAEAATPR-----------EYGASDITVLEGLEAVRK 49

Query: 61  RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           RPGMYIG T  + LHHL  EV+DN++DE +AGY + IE+ L  +G + VVD+GRGIPV+ 
Sbjct: 50  RPGMYIGSTGPRGLHHLVYEVVDNSVDEALAGYCSHIEIVLQADGGVKVVDDGRGIPVDM 109

Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
           HP   +K T+E+++T LHAGGKF    Y +SGGLHGVGISVVNALS  +   V RQ  ++
Sbjct: 110 HP-TEHKPTVEVVMTILHAGGKFGGGGYAVSGGLHGVGISVVNALSSRVDTEVRRQGHVW 168

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
              F+ G        + +   + GT  TF PD +IF     FD   L    Q  A+L+  
Sbjct: 169 RMSFANGGKPQGSLVQGEETERTGTTQTFYPDAEIFET-TEFDFETLRARFQQMAFLNKG 227

Query: 241 VKTCWSCDKEIAEK-----------------YGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
           ++   + ++   E+                         + +  GL  Y++     + + 
Sbjct: 228 LRITLTDERAATEEEADADPDLDGMVTEGEINAEHRTVVYQYDEGLLDYVKHLNSGKKVD 287

Query: 284 SSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
                    E +    +  +E A+ W       + +Y NTI T EGGTHE G R A+T  
Sbjct: 288 VVHEDVIAFETEDKDRKIALEMAMQWTNAYSESVHTYANTINTHEGGTHEEGFRAAMTSL 347

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + +YA       ++  ++  DD+      ++SV + EP+F GQTKTKL + + +  V+  
Sbjct: 348 VNRYAREKGIIKEKDDNLTGDDIREGLTAVISVKLSEPQFEGQTKTKLGNSEVKGFVQRV 407

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458
           + D    +L +NP  A  ++   I  ++ R+  RK R+  R+ + +    +PGKL+DCS 
Sbjct: 408 VTDGLGDWLERNPGPARDVIRKAISAAQARMAARKARDNARRKSPLESFGMPGKLSDCSS 467

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E++IVEGDSAGGSAK+ RN   QA+LPLRGKILNV  A  +K   N ++  ++ 
Sbjct: 468 KDPEKCEVYIVEGDSAGGSAKRGRNPETQAILPLRGKILNVERARLDKALGNAEVQSMIT 527

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A G      +    LRY K+++M DADVDG HI +LL+T  ++ M  LIE  +++L  PP
Sbjct: 528 AFGTGIGEDFDLAKLRYHKIVLMADADVDGQHITTLLMTLLFRYMRPLIENGYVYLAQPP 587

Query: 579 LFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMD 634
           L+RI        Y + +  +   L   +  G+   +   I R+KGLGEM  ++L +T MD
Sbjct: 588 LYRIKWSNAPHDYVYSDRERDAKLVSGQAAGRRIPKDNGIQRYKGLGEMDYTELWDTTMD 647

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            + RTLL+V ++  L          + LMG   + R  FIQ+ A  +  + 
Sbjct: 648 PDNRTLLQVTMDDAL----AADQIFSVLMGEDVESRRNFIQQNAKDVRFLD 694


>gi|281491482|ref|YP_003353462.1| topoisomerase IV subunit B [Lactococcus lactis subsp. lactis KF147]
 gi|281375200|gb|ADA64713.1| Topoisomerase IV, subunit B [Lactococcus lactis subsp. lactis
           KF147]
          Length = 644

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 246/653 (37%), Positives = 366/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NYD S+I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ N I V++
Sbjct: 6   NNYDDSAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGNRISVTI 65

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G L+V D GRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 66  NADGSLSVEDEGRGMPVGKH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 123

Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R  T++ Q+F  G  P + LEK  K  ++K GT++TF PD  IF   
Sbjct: 124 VNALSTWLEVEITRDGTVYRQRFENGGHPATTLEKIGKAPKSKTGTKVTFMPDSSIFSTT 183

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V       +         EKEEF++  G++ ++    E+
Sbjct: 184 -EFKYNIISERLNESAFLLKEVTISLEDKR-------TDEKEEFHYENGVQDFVSYLNED 235

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  ++  +   + ++ G     VE A+ + +     I S+ N + T +GGTHE+GL+ A+
Sbjct: 236 KDSLTPVL-YFEGKQDG---FEVEVALQYNDGYSENILSFVNNVRTKDGGTHEAGLKTAI 291

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ + +YA       ++  ++   D       +LSV I     +F GQTK KL S  A+ 
Sbjct: 292 TKAMNEYARKVNLLKEKDKNLEGSDYREGLTAVLSVLIPEEHLQFEGQTKDKLGSPLARP 351

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451
            V++ + +    YL++N   A  L+   I+  E R   RK RE +R     K       G
Sbjct: 352 VVDSLVSEKLSFYLMENGELAQNLIRKAIKAREAREAARKAREDSRNGKKSKKDKGLLSG 411

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL        +  EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I  N+
Sbjct: 412 KLTPAQTKNPNKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNE 471

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +   D  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 472 EINTMIYTIGAGVGADFTLADRNYDKIIIMTDADTDGAHIQTLLLTFFYRYMKPLVEAGH 531

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     K  YA  +    ++ ++F K+      + R+KGLGEM A Q
Sbjct: 532 VYIALPPLYKMSEGKGKKEKIEYAWTDGELAELRKQFGKNA----NLQRYKGLGEMNADQ 587

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET MD   RTL++V I+         +  ++ LMG K + R K+I+    F
Sbjct: 588 LWETTMDPETRTLIQVTIDD----AAQAEKRVSVLMGDKVEPRRKWIENNVKF 636


>gi|167646829|ref|YP_001684492.1| DNA topoisomerase IV subunit B [Caulobacter sp. K31]
 gi|167349259|gb|ABZ71994.1| DNA topoisomerase IV, B subunit [Caulobacter sp. K31]
          Length = 707

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 378/648 (58%), Positives = 464/648 (71%), Gaps = 14/648 (2%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YDASSI +LEGLEPVRMRPGMYIGGTDE+ALHHLF+EV+DN+MDE +AG+A  IEV LD 
Sbjct: 67  YDASSIEVLEGLEPVRMRPGMYIGGTDERALHHLFAEVLDNSMDEAVAGFAKTIEVRLDA 126

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G+L+V D+GRG+PV+ HPK P KS LE+I+T LHAGGKF    YE SGGLHGVG SVVN
Sbjct: 127 DGYLSVKDDGRGMPVDEHPKHPGKSALEVIMTVLHAGGKFSGKAYETSGGLHGVGASVVN 186

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS+ + VTV R      Q F+RG PL P++K    +  RGT + F+PD +IFGD   F 
Sbjct: 187 ALSELVEVTVWRDGFEHLQSFARGKPLGPVQKIAPSKK-RGTMVRFKPDDQIFGDNVAFK 245

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
            ARL +M +SKAYL   V+  WSCD         P +  F+FP GL  +L  + +   L+
Sbjct: 246 PARLYRMARSKAYLFRGVQIKWSCDPSRILD-QTPAEATFHFPNGLADFLAERTKGLELV 304

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWC-----EENPEITSYCNTILTDEGGTHESGLRVAL 338
           + + F+G+ E++G   G VEWAIAW      E +  + SYCNT+ T EGGTHESGLR  L
Sbjct: 305 TPDSFSGRIERQGEA-GAVEWAIAWTPRGFGEHDGFMQSYCNTVPTPEGGTHESGLRAVL 363

Query: 339 TRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
           TRG+K YAEL   KRA  I +DD++  A  ++SVFI+ PEF GQTK KL S +AQR VEN
Sbjct: 364 TRGLKAYAELKNEKRAAIITADDVIAQAGALISVFIKNPEFQGQTKEKLSSSEAQRFVEN 423

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
           ALRDPFDH+L  +P  A  LLE+VIER+EERL+RRK +EV R +A RKLRLPGKLADC+ 
Sbjct: 424 ALRDPFDHWLTGSPKAAQALLEFVIERAEERLKRRKDKEVQRASATRKLRLPGKLADCAA 483

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
               G ELFIVEGDSAGGSAKQARNR NQA+LPLRGKILNVASA  EK   N+++ DL+ 
Sbjct: 484 GAVDGAELFIVEGDSAGGSAKQARNRKNQAILPLRGKILNVASASGEKFTANKELSDLML 543

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG +  ++Y+EEDLRYE++IIMTDADVDGAHIASLL+TFFY+ M DLI Q HLFL  PP
Sbjct: 544 ALGAQGGARYKEEDLRYERIIIMTDADVDGAHIASLLITFFYRTMPDLIRQGHLFLALPP 603

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+RI+ G KS YA D+EHK ++L    K    K EI RFKGLGEM+ASQLKET MD   R
Sbjct: 604 LYRISHGGKSAYARDDEHKDELLATMFK--GKKPEIGRFKGLGEMMASQLKETTMDPAVR 661

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF-IDDVG 685
           TL ++ +     S +  +  +  LMG K + RF+FIQE A F  DD+ 
Sbjct: 662 TLAKITLP---RSEEAVEALVETLMGRKPELRFRFIQENAEFAADDLD 706


>gi|294630343|ref|ZP_06708903.1| DNA gyrase, B subunit [Streptomyces sp. e14]
 gi|292833676|gb|EFF92025.1| DNA gyrase, B subunit [Streptomyces sp. e14]
          Length = 685

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 256/683 (37%), Positives = 384/683 (56%), Gaps = 25/683 (3%)

Query: 21  EKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSE 80
           E +  +    +  A ++   + +YDAS+I +LEGL+ VR RPGMYIG T E+ LHHL  E
Sbjct: 9   ENIPSTDAGENGAAASSGEVTASYDASAITVLEGLDAVRKRPGMYIGSTGERGLHHLVYE 68

Query: 81  VIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140
           V+DN++DE +AG+A+ I+V++  +G + VVDNGRGIPV   P    K  +E++LT LHAG
Sbjct: 69  VVDNSVDEALAGHADTIDVTILADGGVRVVDNGRGIPVGIVP-SEGKPAVEVVLTVLHAG 127

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKF    Y +SGGLHGVG+SVVNALS ++ V V      ++Q +  G+P +PL + E+  
Sbjct: 128 GKFGGGGYAVSGGLHGVGVSVVNALSSKVSVEVRTDGYRWTQDYKMGVPTAPLARHEETA 187

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI--------- 251
              GT +TF  D  IF     +    L +  Q  A+L+  +    + ++E          
Sbjct: 188 E-TGTSVTFWADADIFET-TEYSFETLSRRFQEMAFLNKGLTIRLTDERESAKATSGADE 245

Query: 252 --AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
             A++    +   +++ GG+  +++     +  +          +      ++E A+ W 
Sbjct: 246 AGADETDEVKSVTYHYEGGIVDFVKYLNSRKGDVVHPTVIDLEAEDKDKSLSLEVAMQWN 305

Query: 310 EENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISA 366
               E + S+ N I T EGGTHE G R ALT  I KYA   +    +  ++  DD+    
Sbjct: 306 GGYSEGVYSFANIIHTHEGGTHEEGFRAALTSLINKYARDKKLLRDKDDNLTGDDIREGL 365

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             I+SV + EP+F GQTKTKL + +A+  V+ A+ +  + +L +NP+EA  ++   I+ +
Sbjct: 366 TAIISVKLSEPQFEGQTKTKLGNTEAKTFVQKAVYEHLNDWLDRNPVEAADIIRKGIQAA 425

Query: 427 EERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
             R+  RK R++ R+   +    LPGKL+DC  N     E+FIVEGDSAGGSAK  RN  
Sbjct: 426 TARVAARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPE 485

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545
            QA+LP+RGKILNV  A  +KI  NQ+I  L+ A G      +  E LRY K+I+M DAD
Sbjct: 486 YQAILPIRGKILNVEKARIDKILQNQEIQALISAFGTGVHEDFDIEKLRYHKIILMADAD 545

Query: 546 VDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEF 604
           VDG HI++LLLTF ++ M  L+E  H++L  PPL++I  G   + YA+ +  +  ++E  
Sbjct: 546 VDGQHISTLLLTFLFRFMRPLVEAGHVYLSRPPLYKIKWGRDDIEYAYSDRERDALIEMG 605

Query: 605 KKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKL 662
           ++ GK   +  I RFKGLGEM A +L+ T MD   R L +V ++          D  + L
Sbjct: 606 RQRGKRIREDSIQRFKGLGEMNAEELRVTTMDQEHRVLGQVTLDD----AAQADDLFSVL 661

Query: 663 MGTKADERFKFIQERASFIDDVG 685
           MG   + R +FIQ  A  +  + 
Sbjct: 662 MGEDVEARRQFIQRNAKDVRFLD 684


>gi|126179353|ref|YP_001047318.1| DNA gyrase, B subunit [Methanoculleus marisnigri JR1]
 gi|125862147|gb|ABN57336.1| DNA gyrase subunit B [Methanoculleus marisnigri JR1]
          Length = 656

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 253/671 (37%), Positives = 375/671 (55%), Gaps = 43/671 (6%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +D YDAS I +LEGL PVR RP MYIG T+ + LHHL  EV+DNA+DE +AG+ +LI+V+
Sbjct: 2   TDTYDASHITVLEGLRPVRERPAMYIGSTESRGLHHLVYEVVDNAVDEALAGFCDLIQVT 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +G ++V DNGRGIPV+  P++  KS LEI+LT LHAGGKFD +TY++SGGLHGVG+S
Sbjct: 62  VNRDGSVSVDDNGRGIPVDLMPQY-GKSALEIVLTVLHAGGKFDKNTYQVSGGLHGVGVS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK------------------ 202
           VVNALS  L  TV +   +++ +F +G+   PL  + +  ++                  
Sbjct: 121 VVNALSSWLDATVFKDGNVYAMQFRQGLVAKPLASRPETEHEMEARYEERYGARDGQPLD 180

Query: 203 ----RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
               RGTRITF+PD  IF     FD   L    +  AYL+  +      ++         
Sbjct: 181 YERLRGTRITFQPDRSIFETV-EFDYDVLDHRLRELAYLNSGLTIVLRDER-------TG 232

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +   + F  G++ ++    E +  +  +I   + ++    +  VE A+ +       I +
Sbjct: 233 DVVTYCFEDGIRQFVAHLGEGKESLHDDIIYFQ-KRDSESKVEVEVALQYNNSYSETIYT 291

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIR 375
           Y N++ T EGGTH  G R ALTR I   A      +     +  +D+      ++S  + 
Sbjct: 292 YVNSVNTREGGTHLEGFRSALTRAINSAAHRNNLLKNNDAQVKGEDVREGLACVISTRVA 351

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
            P+F GQTK +L + + +  V++ +      Y  ++P     +++  +  +  R   R  
Sbjct: 352 NPQFEGQTKMRLGNSNVRGIVDSLVYSSLTEYFEEHPKTLQTVVDKAMAAARAREAARTA 411

Query: 436 REVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE+ R+ + +    LPGKLADC +     +EL+IVEGDSAGGSAKQ R+R  QA+LPLRG
Sbjct: 412 RELARRKSTLESTGLPGKLADCQERDPAKSELYIVEGDSAGGSAKQGRDRKFQAILPLRG 471

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           KILNV  A   KI  N +I  L+ A+G      +  E  RY ++I+MTDADVDGAHI +L
Sbjct: 472 KILNVEKASEHKILKNAEIQALISAIGTGVGDSFDAERARYHRIILMTDADVDGAHIRTL 531

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           LLTFFY+ M  L+E  ++++  PPL+R+ +G +  Y + EE  ++IL E+ + G   + I
Sbjct: 532 LLTFFYRYMVGLVENGYIYIAQPPLYRVAKGRQEQYVYREEEMREILAEWGEKG---VSI 588

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
            R+KGLGEM A QL  T MD   R L +V+I           +   KLMG   D R  FI
Sbjct: 589 QRYKGLGEMNAGQLWSTTMDPANRILKQVKIED----AAYANEIFEKLMGENVDARRDFI 644

Query: 675 QERASFIDDVG 685
           +  A  + ++ 
Sbjct: 645 RRHAKEVSNLD 655


>gi|269793364|ref|YP_003312819.1| DNA gyrase subunit B [Sanguibacter keddieii DSM 10542]
 gi|269095549|gb|ACZ19985.1| DNA gyrase subunit B [Sanguibacter keddieii DSM 10542]
          Length = 683

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 247/690 (35%), Positives = 366/690 (53%), Gaps = 33/690 (4%)

Query: 20  SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79
           +E    +   P +      +    Y AS I +LEGLE VR RPGMYIG T E+ LHHL  
Sbjct: 2   AELNNAADSEPSTHVPG--TVDGGYGASDITVLEGLEAVRKRPGMYIGSTGERGLHHLVY 59

Query: 80  EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139
           EV+DN++DE +AGY + IEV+L  +G + VVDNGRGIPV+ HP    + T+E+++T LHA
Sbjct: 60  EVVDNSVDEALAGYCDHIEVTLLDDGGVRVVDNGRGIPVDIHP-TEGRPTVEVVMTILHA 118

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKF    Y +SGGLHGVGISVVNALS  +   V RQ   + Q F+ G       +K   
Sbjct: 119 GGKFGGGGYAVSGGLHGVGISVVNALSTRVETVVRRQGFTWHQSFADGGKPVGELRKGDA 178

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP- 258
            ++ GT+ TF  D  IF     +D   L    Q  A+L+  ++   + ++    +     
Sbjct: 179 TDQTGTQQTFWADGSIFET-TRYDFETLRARFQQMAFLNKGLQISLTDERSDVAETDDEV 237

Query: 259 -------------EKEEFYFPGGLKTYLQTKLENR--SLISSEIFTGKTEKKGTHRGTVE 303
                            + +  GL  Y+      +   ++  +I   ++E     R ++E
Sbjct: 238 TGAEDGEGAGAQARTVVYKYDRGLLDYVAHLNSAKRVEIVHEDIIAFESE-DTERRISLE 296

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISD 360
            A+ W       + +Y NTI T EGGTHE G R A+T  + +YA       ++  ++  D
Sbjct: 297 VAMQWTNAYSESVHTYANTISTTEGGTHEEGFRAAMTSLVNRYARAKGIIKEKDDNLTGD 356

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D+      ++S+ + EP+F GQTKTKL + +A+  V++ + +    +L  +P+EA  ++ 
Sbjct: 357 DIREGLTAVISIKLGEPQFEGQTKTKLGNTEAKTFVQSVVNEQLGDWLDSHPVEAKDIIR 416

Query: 421 WVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
             I+ S+ RL  RK RE  R+   +    +PGKL DC  N     E++IVEGDSAGGSA 
Sbjct: 417 KAIQASQARLAARKAREATRRKGLLESGGMPGKLRDCQSNKPEECEVYIVEGDSAGGSAV 476

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
           + RN   QA+LP+RGKILNV  A  +K   NQ++  L+ A G      +    LRY K++
Sbjct: 477 RGRNPRTQAILPIRGKILNVERARLDKALGNQEVQALITAFGTGIGEDFDIAKLRYHKIV 536

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQ 598
           +M DADVDG HI +LLLT  ++ M  LIE   ++L  PPL+RI        Y + +  + 
Sbjct: 537 LMADADVDGQHICTLLLTLLFRYMRPLIEHGMVYLAQPPLYRIKWSNAEHDYVYSDRERD 596

Query: 599 KILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
           + +     +GK   +   I R+KGLGEM  S+L +T MD + RTLL+V ++         
Sbjct: 597 EYIAAGLANGKRIPKDNGIQRYKGLGEMDYSELWDTTMDPDHRTLLQVTLDD----AAAA 652

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
            +  + LMG   + R  FIQ  A  +  + 
Sbjct: 653 DEIFSVLMGEDVESRRNFIQRNAKDVRFLD 682


>gi|28209863|ref|NP_780807.1| DNA gyrase subunit B [Clostridium tetani E88]
 gi|28202298|gb|AAO34744.1| DNA gyrase subunit B [Clostridium tetani E88]
          Length = 637

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 252/653 (38%), Positives = 380/653 (58%), Gaps = 22/653 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            Q     YD S I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AGY + 
Sbjct: 2   EQDKKQKYDESQIQVLEGLEAVRKRPGMYIGSTGARGLHHLVYEIVDNSIDEALAGYCDK 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I++ ++ +  +T+ DNGRG+PV  HPK  NK T+E+I+T LHAGGKF    Y++SGGLHG
Sbjct: 62  IDIYINEDNSITIEDNGRGMPVGLHPKM-NKPTVEVIMTILHAGGKFGGGGYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS E  V V R   ++ Q + +GI ++ LEK  +   + GT+  F+PDP IF
Sbjct: 121 VGASVVNALSSECRVEVKRDGYVWRQVYEKGIAVTGLEKIGETS-QHGTKTYFKPDPTIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   F+   L++  +  A+L+  +       +       + +KE+F++ GG+K+++   
Sbjct: 180 DEL-EFEYDVLVQRLREMAFLNKGINITIEDKR-------VDKKEDFHYEGGIKSFVLYL 231

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
              + ++  E    +  K       VE +I + +     I S+ N I T EGGTH +G +
Sbjct: 232 NRTKEVLHKEPIYIEGMKDEHM---VEISIQYNDGYAENIFSFANNISTIEGGTHLAGFK 288

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            A+TR    YA       +   ++  +D+      I+SV + +P+F GQTKTKL + + +
Sbjct: 289 SAVTRAFNDYARRYGFLKENDKNLAGEDIREGITAIISVKLIDPQFEGQTKTKLGNSEVR 348

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
             V+  + +   ++L +NP  A  +++  ++        R+ +    RK+ +    LPGK
Sbjct: 349 GIVDTIVGEGVGNFLEENPQIAKSIIDKTLMAARAREAARKARDLTRRKSVLESTSLPGK 408

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS       E++IVEGDSAGGSAKQ RNR  QA+LPLRGKI+NV     +KI N+  
Sbjct: 409 LADCSSKDPKECEIYIVEGDSAGGSAKQGRNRRFQAILPLRGKIMNVEKQRLDKILNSDT 468

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++ A G      +  E +RY ++IIMTDADVDGAHI +LLLTFFY+ M +L+E  H+
Sbjct: 469 IKSMITAFGAGIGKDFDVEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMKELVENGHV 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL+++++  K  Y + +   ++IL+E       K +I R+KGLGEM A QL +T 
Sbjct: 529 YIAQPPLYKVSKDRKEHYVYTDRELEEILDEIGGRDN-KTQIQRYKGLGEMNAEQLWDTT 587

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           M+ +KR LLR  I   +       +    LMG K D R +FIQE A  + ++ 
Sbjct: 588 MNPDKRILLRATIEDAM----AADEIFTILMGDKVDLRREFIQENAKTVVNLD 636


>gi|298246161|ref|ZP_06969967.1| DNA gyrase, B subunit [Ktedonobacter racemifer DSM 44963]
 gi|297553642|gb|EFH87507.1| DNA gyrase, B subunit [Ktedonobacter racemifer DSM 44963]
          Length = 668

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 254/672 (37%), Positives = 389/672 (57%), Gaps = 21/672 (3%)

Query: 18  GSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHL 77
            +      S +  D  +      ++ Y   +I+ILEGLE VR+RPGMYIG TD++ LHHL
Sbjct: 13  ATPANTISSSDEVDLGSTTQNHGNNGYSGQNIQILEGLEAVRVRPGMYIGATDQRGLHHL 72

Query: 78  FSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137
             EV+DN++DEV+AGYA+ I+V++  +G +T+ DNGRGIPVE H + P  STLE+++T L
Sbjct: 73  IQEVVDNSVDEVMAGYADTIQVTIHADGSVTIEDNGRGIPVEEHHQRPGMSTLEVVMTVL 132

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKF    Y+IS GLHGVG+SVVNALS+   V V R   ++ Q++ +G P++ L    
Sbjct: 133 HAGGKFGGGGYQISSGLHGVGVSVVNALSEWCQVDVRRDGKVYRQRYEKGTPVTKLAAVG 192

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
                 GTR +F PD  +      ++   L +  +  AYL+  +  C   ++   E    
Sbjct: 193 -SFEGTGTRTSFMPDLSVMET-RDYNFDMLAQRFREMAYLNRGMTICIRDERSDREAT-- 248

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEIT 316
                FYF GGL ++++   +NR+ + +   +   E     +  V+ A+ + +  +    
Sbjct: 249 -----FYFEGGLVSFVRYLNKNRNTLQARPASASRE---IDKVKVDIALQYNDSWSTTEF 300

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
           S+ N I T +GG H +G R ALTR +  YA  T    ++  ++  DD+      ++SV I
Sbjct: 301 SFANGINTVDGGMHITGFRSALTRSLNDYARKTGLLKEKDPNLTGDDVRQGLAVVVSVKI 360

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
             P+F  QTK+KL + + +  VEN   D  + YL + P EA  ++   +  ++ R   R 
Sbjct: 361 PNPQFEAQTKSKLNNAEIRPIVENITADMLNRYLEETPSEAKAIISKCLTSAKAREAARA 420

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
            R++ ++  +    LPGKLADCS+  A   EL++VEGDSAGGSAKQ R+R  QA+LPLRG
Sbjct: 421 ARDLVQRKNVLDTTLPGKLADCSERRADRCELYLVEGDSAGGSAKQGRDRHFQAILPLRG 480

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           KILNV     +KI +N+++ +++ A+G     Q+    LRY +V+IM DADVDGAHI +L
Sbjct: 481 KILNVERVTLDKILHNEEVKNIITAVGVGIGEQFNLSRLRYGRVVIMCDADVDGAHIRTL 540

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK-IE 613
           LLTFFY+ M +LI   HL++  PPL+ +  G +  + + EE +  ++ E+K    GK  E
Sbjct: 541 LLTFFYRYMPELIGGGHLYIAQPPLYHVKFGKQVHFVYTEEERDALINEYKATHNGKEPE 600

Query: 614 ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKF 673
           + R+KGLGEM    L ET MD  +RT+L+V +++ +    +     + LMG +   R +F
Sbjct: 601 VGRYKGLGEMNPETLWETTMDPERRTILKVSVDEAV----EADKVFSMLMGDEVAPRRRF 656

Query: 674 IQERASFIDDVG 685
           I+  A    ++ 
Sbjct: 657 IESHARNA-NLD 667


>gi|325696789|gb|EGD38677.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           sanguinis SK160]
          Length = 649

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 258/658 (39%), Positives = 379/658 (57%), Gaps = 24/658 (3%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +        +  YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +A
Sbjct: 2   TEEKQQDIQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+A+ I+V ++ +  +TVVDNGRGIPV+   K   +  +E + T LHAGGKF    Y++S
Sbjct: 62  GFASHIQVFIEKDNSITVVDNGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVS 120

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG SVVNALS +L V V +   I  Q++ RG  ++ LE   +  ++ GT + F P
Sbjct: 121 GGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEYRRGHVVADLEIIGET-DRTGTTVHFTP 179

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           DP+IF +   FD  +L K  Q  A+L+  ++   +  ++  E     + +++++ GG+ +
Sbjct: 180 DPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKRDGME-----QVKDYHYEGGIAS 234

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           Y+Q   EN+ +I         E       TVE A+ +       + S+ N I T EGGTH
Sbjct: 235 YVQYINENKDVIFETPIYTDGEMDDI---TVEVAMQYTTGYHETVMSFANNIHTHEGGTH 291

Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           E G R ALTR I  YA+  +  +    ++  +D+      ++SV    P+F GQTKTKL 
Sbjct: 292 EQGFRTALTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLG 351

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447
           + +  +       + F  +L++NP  A K++E  I  S+ R+  ++ RE   +K+ +   
Sbjct: 352 NSEVVKITNRLFSEAFSDFLLENPAVARKIVEKGILASKARIAAKRAREVTRKKSGLEIS 411

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADCS N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI
Sbjct: 412 NLPGKLADCSSNDPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKI 471

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N++I  L  A+G    + +     RY+K++IMTDADVDGAHI +LLLT  Y+ M  ++
Sbjct: 472 LANEEIRSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVL 531

Query: 568 EQKHLFLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGE 622
           E   +++  PP++ +  G++   Y       EE  Q  L  +   G+ K  I R+KGLGE
Sbjct: 532 EAGFVYIAQPPIYGVKVGSEVKEYIQPGANQEEELQAALARYS-EGRSKPTIQRYKGLGE 590

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           M   QL ET M+   R + RV +N       +     + LMG + + R +FI+E A +
Sbjct: 591 MDDHQLWETTMNPEHRLMARVSVND----AAEADKIFDMLMGDRVEPRREFIEENAVY 644


>gi|171780013|ref|ZP_02920917.1| hypothetical protein STRINF_01800 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281361|gb|EDT46796.1| hypothetical protein STRINF_01800 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 650

 Score =  604 bits (1556), Expect = e-170,   Method: Composition-based stats.
 Identities = 256/649 (39%), Positives = 378/649 (58%), Gaps = 24/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A  IEV 
Sbjct: 12  AKEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFATHIEVF 71

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGVG S
Sbjct: 72  IEKDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 130

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L V+V R   I  Q++ RG  +  L+      ++ GT + F PD +IF +  
Sbjct: 131 VVNALSTQLDVSVYRDGKIHYQEYRRGHVVDDLKVIGDT-DRHGTTVHFTPDGEIFTETT 189

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD  +L K  Q  A+L+  ++   +  +E  E     +++ +++ GG+ +Y++   EN+
Sbjct: 190 VFDFDKLAKRIQELAFLNRGLRISITDKREGIE-----QEQHYHYEGGISSYVEFINENK 244

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
            +I  +      E  G    +VE A+ +       + S+ N I T EGGTHE G R ALT
Sbjct: 245 DVIFDKPIYTDGEMDGI---SVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRTALT 301

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA   +   ++  ++  DD+      ++SV    P+F GQTKTKL + +  +   
Sbjct: 302 RVINDYARQNKLLKEKDDNLTGDDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 361

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
               D F  +L++NP  A K++E  I  S+ R+  ++ RE   +K+ +    LPGKLADC
Sbjct: 362 RLFSDAFGRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADC 421

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S N A   ELFIVEGDSAGGSAK  R+R +QA+LP+RGKILNV  A  +KI  N++I  L
Sbjct: 422 SSNDATMNELFIVEGDSAGGSAKSGRDREHQAILPIRGKILNVEKASMDKILANEEIRSL 481

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    + +     RY K++IMTDADVDGAHI +LLLT  Y+ M  ++E  ++++  
Sbjct: 482 FTAMGTGFGADFDVTKARYHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQ 541

Query: 577 PPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           PP++ +  G++   Y       E   Q  +E +  +G+ K  + R+KGLGEM   QL  T
Sbjct: 542 PPIYGVKVGSEIKEYIQPGANQEAELQAAIERYS-NGRSKPSVQRYKGLGEMDDHQLWAT 600

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            MD   R + RV ++       +     + LMG K + R +FI+E A +
Sbjct: 601 TMDPENRLMARVSVDD----AAEADKIFDMLMGDKVEPRREFIEENAVY 645


>gi|76562223|gb|ABA44807.1| DNA gyrase, B subunit [Streptococcus agalactiae A909]
          Length = 643

 Score =  604 bits (1556), Expect = e-170,   Method: Composition-based stats.
 Identities = 254/657 (38%), Positives = 381/657 (57%), Gaps = 25/657 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +  +  YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A  I
Sbjct: 2   EQRAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFAGHI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGV
Sbjct: 62  KVYIEPDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS +L V V +   +  Q++ RG+ ++ LE      +  GT + F PDP+IF 
Sbjct: 121 GSSVVNALSTQLDVKVYKNGKVHYQEYQRGVVVNDLEIIGDT-DLSGTTVHFTPDPEIFT 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   FD  +L K  Q  A+L+  ++   S  +E  E         +++ GG+ +Y++   
Sbjct: 180 ETTVFDFDKLAKRIQELAFLNRGLRISISDKREGQEVEKE-----YHYEGGIGSYVEFIN 234

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           EN+ +I         E  G    +VE A+ +       + S+ N I T EGGTHE G R 
Sbjct: 235 ENKEVIFENPIYTDGELDGI---SVEVAMQYTTGYQETVMSFANNIHTHEGGTHEQGFRT 291

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA+  +   +   ++  +D+      ++SV    P+F GQTKTKL + +  +
Sbjct: 292 ALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 351

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
                  + F+ +L++NP  A K++E  I  S+ R+  ++ RE   +K+ +    LPGKL
Sbjct: 352 ITNRLFSEAFNRFLLENPQVAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS N A   ELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I
Sbjct: 412 ADCSSNNAEMNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 471

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             L  A+G    + +    +RY+K++IMTDADVDGAHI +LLLT  Y+ M  ++E  +++
Sbjct: 472 RSLFTAMGTGFGADFDVSKVRYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVY 531

Query: 574 LISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           +  PP++ +  G++   Y       EE  ++ L+ +   G+ K  + R+KGLGEM   QL
Sbjct: 532 IAQPPIYGVKVGSEIKAYIQPGVNQEEELRQALDTYS-SGRSKPTVQRYKGLGEMDDHQL 590

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            ET MD   R + RV ++       +     + LMG + + R +FI+  A +  ++ 
Sbjct: 591 WETTMDPENRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEANAVY-SNLD 642


>gi|320547135|ref|ZP_08041431.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           equinus ATCC 9812]
 gi|320448261|gb|EFW89008.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           equinus ATCC 9812]
          Length = 650

 Score =  604 bits (1556), Expect = e-170,   Method: Composition-based stats.
 Identities = 256/649 (39%), Positives = 376/649 (57%), Gaps = 24/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A  IEV 
Sbjct: 12  AKEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFATHIEVF 71

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGVG S
Sbjct: 72  IEKDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 130

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L V+V R   I  Q++ RG  +  L+      ++ GT + F PD +IF +  
Sbjct: 131 VVNALSTQLDVSVYRDGKIHYQEYRRGHVVDDLKVIGDT-DRHGTTVHFTPDGEIFTETI 189

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD  +L K  Q  A+L+  ++   +  +E  E     +++ +++ GG+ +Y+Q   EN+
Sbjct: 190 VFDFDKLAKRIQELAFLNRGLRISITDKREGIE-----QEQHYHYEGGISSYVQFINENK 244

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
            +I         E  G    +VE A+ +       + S+ N I T EGGTHE G R ALT
Sbjct: 245 DVIFDTPIYTDGEMDGI---SVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRTALT 301

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA   +   ++  ++  DD+      ++SV    P+F GQTKTKL + +  +   
Sbjct: 302 RVINDYARQNKILKEKDDNLTGDDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 361

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
               D F  +L++NP  A K++E  I  S+ R+  ++ RE   +K+ +    LPGKLADC
Sbjct: 362 RLFSDAFSRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADC 421

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S N     ELFIVEGDSAGGSAK  R+R +QA+LP+RGKILNV  A  +KI  N++I  L
Sbjct: 422 SSNDVTMNELFIVEGDSAGGSAKSGRDREHQAILPIRGKILNVEKASMDKILANEEIRSL 481

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    + +     RY K++IMTDADVDGAHI +LLLT  Y+ M  ++E  ++++  
Sbjct: 482 FTAMGTGFGADFDVTKARYHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQ 541

Query: 577 PPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           PP++ +  G++   Y       E   Q  +E +  +G+ K  + R+KGLGEM   QL  T
Sbjct: 542 PPIYGVKVGSEIKEYIQPGANQESELQAAIERYS-NGRSKPSVQRYKGLGEMDDHQLWAT 600

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            MD   R + RV ++       +     + LMG K + R +FI+E A +
Sbjct: 601 TMDPENRLMARVSVDD----AAEADKIFDMLMGDKVEPRREFIEENAVY 645


>gi|163795529|ref|ZP_02189495.1| Type IIA topoisomerase, B subunit [alpha proteobacterium BAL199]
 gi|159179128|gb|EDP63661.1| Type IIA topoisomerase, B subunit [alpha proteobacterium BAL199]
          Length = 669

 Score =  604 bits (1556), Expect = e-170,   Method: Composition-based stats.
 Identities = 367/665 (55%), Positives = 471/665 (70%), Gaps = 16/665 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            ++ + +D+Y A  I +LEGLEPVR RPGMYIGG DE+ALHHL +EV+DN MDE +AG+A
Sbjct: 6   ASSAARTDDYSAKDIEVLEGLEPVRRRPGMYIGGVDERALHHLVAEVLDNCMDEAVAGHA 65

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + IE+ L  +  +TV DNGRGIPV+ HPKFP+KS LE+ILTTLH+GGKF +  Y  +GGL
Sbjct: 66  SWIEIELAADHTVTVRDNGRGIPVDPHPKFPSKSALEVILTTLHSGGKFSDKVYATAGGL 125

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD L V VAR   +++Q+F+RG+PL PLE      N+RGT + F PDP+
Sbjct: 126 HGVGVSVVNALSDRLEVEVARDRRLYAQRFARGVPLGPLETIGAAPNRRGTTVRFHPDPE 185

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE-IAEKYGIPEKEEFYFPGGLKTYL 273
           IFG  A F  A L +M++SKAYL   V+  W  D E + +  G P +   ++PGGL  +L
Sbjct: 186 IFGPNAHFRPATLYRMSRSKAYLFKGVEIRWKVDPELLRDGDGTPAEAVIHYPGGLADFL 245

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE--ENPEITSYCNTILTDEGGTHE 331
            + +E R  I+   FTG        +G VEWA  W +  ++  + +YCNTI T +GGTHE
Sbjct: 246 ASSIEGRRTIAERPFTGDVAAPD-GQGRVEWAATWPDDQDDGFLHAYCNTIPTPQGGTHE 304

Query: 332 SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           +GLR AL RG+K Y E+  NKRA  + +DDLM  A  +LSVFIR+P+F GQTK +LVS +
Sbjct: 305 AGLRTALLRGVKAYGEMVGNKRAAQVTADDLMGGACIMLSVFIRDPQFQGQTKDRLVSQN 364

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           A R VE A++D FDH+L   P  A  LLE +IER+E+RLRRR+Q+EV+RKTA RKLRLPG
Sbjct: 365 ATRMVEQAVKDHFDHWLSGAPEIANLLLERLIERAEDRLRRRQQKEVSRKTATRKLRLPG 424

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS++ A GTE+F+VEGDSAGGSAKQAR R+ QA+LPLRGKILNVASA ++K+R NQ
Sbjct: 425 KLADCSRSDADGTEIFLVEGDSAGGSAKQARERATQAILPLRGKILNVASASADKLRQNQ 484

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++ DLVQALGC   S ++ + LRYEKV+IMTDADVDGAHIASLL+TFFY+EM  LIE+ H
Sbjct: 485 ELADLVQALGCGAGSSFKLDQLRYEKVVIMTDADVDGAHIASLLMTFFYREMPRLIEEGH 544

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           LFL  PPL+R+TQG K+VYA D+ HK +++      GK K+EISRFKGLGEM   QLKET
Sbjct: 545 LFLAMPPLYRLTQGGKTVYARDDAHKDELMAT-AFSGKAKVEISRFKGLGEMPPMQLKET 603

Query: 632 AMDANKRTLLRVEINKD-----------LNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            M+   R LLRV +                  + T + +  LMG K + RF +IQ  A F
Sbjct: 604 TMNRQTRQLLRVRVPPSGGPGLVLEPELEAETRRTSEMVESLMGKKPELRFAYIQANARF 663

Query: 681 IDDVG 685
           + DV 
Sbjct: 664 VHDVD 668


>gi|295101859|emb|CBK99404.1| DNA gyrase subunit B [Faecalibacterium prausnitzii L2-6]
          Length = 664

 Score =  604 bits (1556), Expect = e-170,   Method: Composition-based stats.
 Identities = 244/671 (36%), Positives = 372/671 (55%), Gaps = 31/671 (4%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +   A  +    Y+AS I++L+GLE VR RPGMYIG T E+ LHHL  E++DNA+DE +A
Sbjct: 7   TSTNAETATDHEYNASEIQVLKGLEAVRKRPGMYIGSTGERGLHHLVYEIVDNAIDEALA 66

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF--DNSTYE 149
           GY + IEV +     + V DNGRGIPV+          + ++ T LHAGGKF  +NS Y+
Sbjct: 67  GYCDHIEVKILKGDIIQVTDNGRGIPVDIQA-DTGLPAVTVVYTILHAGGKFGGENSGYK 125

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRIT 208
           ++GGLHGVG SVVNA S+ L V V R    + Q F RG P  PL+    V  +  GTR+T
Sbjct: 126 VAGGLHGVGASVVNACSEWLTVNVRRDGREYEQTFRRGDPDGPLKCIGTVDPSVTGTRVT 185

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE--------IAEKYGIPEK 260
           F+PDP++F D   ++   L K  + +++L+  VK   + ++E          E       
Sbjct: 186 FKPDPEMFKDTTVYNFETLEKRLREESFLNAGVKITLTDERELYTPVLEDGKEGEPTYRT 245

Query: 261 EEFYFPGGLKTYLQTKLENR--SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           E   + GG+K+++    E R   ++   +   K +     RG  E A+ +       + S
Sbjct: 246 EVMCYEGGIKSFVTYLGEKRDLEVLHPNVIYLKGQTD---RGMAEIALQYNSSYNELLLS 302

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N + T +GGTHE G R +LTR    Y         +  ++   D+    + ++SV ++
Sbjct: 303 FANNVNTPDGGTHEEGFRSSLTRVFNDYGRSHGLLKDKDENLSGADVREGLICVISVKLQ 362

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRK 434
           E EF GQTK KL + + +  V N +      +  +NP  A  +  +           ++ 
Sbjct: 363 EAEFEGQTKAKLGNTEIRTLVSNMVYSKLMEFFEENPGVAKAIFEKATQAARARAAAKKA 422

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +  V RK+A+   R+PGKLADC +     TE+FIVEGDSAGGSAK  R+ + QA+LPL G
Sbjct: 423 RELVRRKSALETSRMPGKLADCREKDPTRTEIFIVEGDSAGGSAKMGRDSAIQAILPLWG 482

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           K+LNV  A +++I  N ++M +V ALGC    ++    LRY+KV IM DADVDG+HI +L
Sbjct: 483 KMLNVEKARADRIYGNDKLMPVVLALGCGIGDEFDISKLRYDKVFIMADADVDGSHICTL 542

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M  LIEQ H+++  PPLF++ +G+   YA+++     + +E         +I
Sbjct: 543 MLTFFFRYMRPLIEQGHVYVAQPPLFKVQKGSTIKYAYNDAEMALLSQEMP-----GAKI 597

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
           +R+KGLGEM   QL ET M+ + R ++R+ I       +   ++   LMG + + R +FI
Sbjct: 598 NRYKGLGEMNPEQLWETTMNPDNRVIVRITIED----AEKADEAFTILMGDQVEPRRRFI 653

Query: 675 QERASFIDDVG 685
           +  A +   + 
Sbjct: 654 ETNAQYAK-LD 663


>gi|146340513|ref|YP_001205561.1| DNA topoisomerase IV subunit B [Bradyrhizobium sp. ORS278]
 gi|146193319|emb|CAL77335.1| DNA topoisomerase IV, subunit B [Bradyrhizobium sp. ORS278]
          Length = 691

 Score =  604 bits (1556), Expect = e-170,   Method: Composition-based stats.
 Identities = 383/671 (57%), Positives = 483/671 (71%), Gaps = 9/671 (1%)

Query: 20  SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79
           + K K   +    PA     +   Y A  I +LEGLEPVR RPGMYIGGTDEKALHHLF+
Sbjct: 24  AAKGKAQTKHQAKPAARAAGSEGEYTARDIEVLEGLEPVRRRPGMYIGGTDEKALHHLFA 83

Query: 80  EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139
           EVIDN+MDE +AG+A  IEV LD  GFLTV DNGRGIP++ HPKFP KS LEII+ TLHA
Sbjct: 84  EVIDNSMDEALAGHATFIEVELDAQGFLTVTDNGRGIPIDPHPKFPKKSALEIIMCTLHA 143

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+  YE SGGLHGVGISVVNALS  L V VAR   ++   F RG P   LE+  K 
Sbjct: 144 GGKFDSKVYETSGGLHGVGISVVNALSTRLEVEVARNQKLYRMIFERGHPKGKLEEVGKA 203

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            N+RGT++ F+PDP IFG KA F   RL KM +SKAYL G V+  W CD  + +     +
Sbjct: 204 PNRRGTKVRFQPDPTIFGAKATFKPQRLFKMARSKAYLFGGVEIRWKCDPSLLKGIEDVQ 263

Query: 260 KE-EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITS 317
            E  F+FPGGLK YL   +   +L+  +IF GK+ + G H G  EWA+AW  + +  ++S
Sbjct: 264 PEATFHFPGGLKDYLAAAIHADTLVHPDIFAGKSGRTGGH-GGCEWAVAWTADADGFLSS 322

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIRE 376
           YCNTI T +GGTHESG+R AL RG+K +AE     KR+ +I S+D+M  A  +LSVF+RE
Sbjct: 323 YCNTIPTPDGGTHESGIRSALLRGLKDHAERVGQGKRSANITSEDIMAGAAIMLSVFVRE 382

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           PEF GQTK +L + +AQR VE A++DPFDH+L  NP++A +LL++V+ER+EER+RRR+++
Sbjct: 383 PEFQGQTKDRLATAEAQRIVEQAVKDPFDHWLSGNPVQANRLLDFVVERAEERIRRRQEK 442

Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
           E  RKTA +KLRLPGKLADC+     G+ELFIVEGDSAGGSAKQAR+R  QAVLPLRGKI
Sbjct: 443 ETARKTATKKLRLPGKLADCTDAGTEGSELFIVEGDSAGGSAKQARDRKKQAVLPLRGKI 502

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556
           LNVASAG +K+  N Q+ DLV A+G  T + YREEDLRY+++IIMTDADVDGAHIASLL+
Sbjct: 503 LNVASAGKDKLTANAQLADLVMAIGAGTGTSYREEDLRYQRIIIMTDADVDGAHIASLLI 562

Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616
           TFFY++M  LI++ HL+L  PPL+R+T G+K+ YA D+ H+ ++L   + +   K+EI R
Sbjct: 563 TFFYRQMPRLIDEGHLYLAVPPLYRLTHGSKTFYARDDAHRDELLRR-EFNANAKVEIGR 621

Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           FKGLGEM+ +QLKET MD  KRTLLRV +  D      T DS+ +LMGTKA+ RF FI E
Sbjct: 622 FKGLGEMMPAQLKETTMDPAKRTLLRVMLLADDRDG--TADSVERLMGTKAEARFAFISE 679

Query: 677 RASFIDD--VG 685
           +A F  D  + 
Sbjct: 680 KAEFASDELLD 690


>gi|124485239|ref|YP_001029855.1| DNA gyrase subunit B [Methanocorpusculum labreanum Z]
 gi|124362780|gb|ABN06588.1| DNA gyrase subunit B [Methanocorpusculum labreanum Z]
          Length = 651

 Score =  604 bits (1556), Expect = e-170,   Method: Composition-based stats.
 Identities = 260/666 (39%), Positives = 369/666 (55%), Gaps = 38/666 (5%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +DNYDAS I +LEGL PVR RP MYIG TD + LHHL  EV+DN++DE +AG+   I + 
Sbjct: 2   TDNYDASHITVLEGLTPVRERPAMYIGSTDTRGLHHLVYEVVDNSIDEALAGFCKHIVII 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ NG ++V D+GRGIPV+  PK  NKS LE+++T LHAGGKFD +TY++SGGLHGVG+S
Sbjct: 62  INPNGSVSVEDDGRGIPVDIMPKQ-NKSALEVVMTVLHAGGKFDKNTYQVSGGLHGVGVS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN------------------K 202
           VVNALS  L   V R   I+S  F +G+ L PL  + +                      
Sbjct: 121 VVNALSTRLTAEVYRDGNIYSMVFGKGVLLQPLTSRPETDEEYLLRQKRLDKEGQPKETT 180

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GTRITF PD  IF     FD   L    +  AYL+  ++      +         + + 
Sbjct: 181 TGTRITFYPDGSIFETT-EFDYDVLAHRFRELAYLNKGLEIHVEDHR-------TGDSDT 232

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNT 321
           F + GGL+ ++    E + L+  E      +    ++  VE A+ + +   EI   Y N+
Sbjct: 233 FCYEGGLRQFVAHLNEGKELLHPEPIYVD-KSDDVNKIEVEVALQYNDTYGEILYTYVNS 291

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFA 380
           + T EGGTH  G R ALTR I   A   +  K  +S+  +D+      ++SV I  P+F 
Sbjct: 292 VNTREGGTHLEGFRSALTRAINNIAHANKHLKEDVSVRGEDVREGLTAVISVKIANPQFE 351

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VN 439
           GQTK +L + + +  V++ +      +  +NP     + +  ++ +  R   R+ +E   
Sbjct: 352 GQTKMRLGNSNVKGLVDSMMYQALTEFFEENPKVIAAIAKKSLDAANAREAARRAKELAR 411

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT++    LPGKLADCS+     +E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV
Sbjct: 412 RKTSLEMSGLPGKLADCSERDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNV 471

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
             A   K   N +I  L+ A+G     ++  E  RY  ++IMTDADVDGAHI  LLLTFF
Sbjct: 472 EKALEHKALKNAEIQTLITAIGAGYGDKFDAERARYHHIVIMTDADVDGAHIRILLLTFF 531

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
           Y+ M  L+E  ++++  PPLFRI +G +  Y + EE  +  + E+ + G   I + R+KG
Sbjct: 532 YRFMKPLVEMGYIYIAQPPLFRIAKGKQEKYVYTEEDMRLAIAEYGEKG---ISVQRYKG 588

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679
           LGEM A QL  T M+   R L +V I           +   KLMG     R  FI+  A 
Sbjct: 589 LGEMNAGQLWNTTMNPEFRILKQVRIED----ASYANEIFEKLMGDDVMPRKDFIKRHAG 644

Query: 680 FIDDVG 685
            + ++ 
Sbjct: 645 EVKNLD 650


>gi|257054095|ref|YP_003131927.1| DNA gyrase subunit B [Saccharomonospora viridis DSM 43017]
 gi|256583967|gb|ACU95100.1| DNA gyrase subunit B [Saccharomonospora viridis DSM 43017]
          Length = 654

 Score =  604 bits (1556), Expect = e-170,   Method: Composition-based stats.
 Identities = 259/662 (39%), Positives = 382/662 (57%), Gaps = 26/662 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + +  Y ASSI +LEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AGYA+ +E
Sbjct: 3   AKNSEYSASSITVLEGLEAVRKRPGMYIGSTGVRGLHHLIQEVVDNSVDEAMAGYASRVE 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+L  +G + VVD+GRGIPVE HP    K T+EI+LT LHAGGKFD+ +Y +SGGLHGVG
Sbjct: 63  VTLLADGGVRVVDDGRGIPVEPHP-VHGKPTVEIVLTQLHAGGKFDSDSYAVSGGLHGVG 121

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS  L V + R   I++Q++   +P       +   ++ GT +TF  DP+IF  
Sbjct: 122 VSVVNALSSALEVEIHRDGRIWAQRYENSVPGEL--VDKGPTDRSGTSVTFWADPEIFET 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE-------FYFPGGLKT 271
              ++A  + +  Q  A+L+  +      ++   E+      E        +Y+PGGL+ 
Sbjct: 180 -TEYNAETVARRLQEMAFLNKGLTMILRDERVTDEEGEDATGERAQLKERTYYYPGGLED 238

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    +R  I   + + + +  G     VE A+ W +   P + ++ NTI T EGGTH
Sbjct: 239 FVKYINASREAIHPSVISFEQKGDG---LEVEVAMQWNDGYTPSVYTFANTINTHEGGTH 295

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           E G R ALTR +  YA   +   ++  ++  DD+      I+S+ + EP+F GQTKTKL 
Sbjct: 296 EEGFRAALTRVVNAYARDKKLLKEKDANLTGDDVREGLAAIVSIKLTEPQFEGQTKTKLG 355

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447
           + +A+  V+ A  +    +  +NP EA  ++   +  ++ RL  RK R+ V RK A+   
Sbjct: 356 NSEARSFVQTACNEWLADWFERNPTEAKLIINKAVSSAQARLAARKARDLVRRKGAMDIG 415

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKL DC  N     EL+IVEGDSAGGSAK+ R+   QA+LP+RGKI+NV  A  +K+
Sbjct: 416 GLPGKLKDCRSNDPEECELYIVEGDSAGGSAKEGRDSRFQAILPIRGKIINVEKARIDKV 475

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             NQ++  L+ ALG      +    LRY K++IM DADVDG HI +LLLT  ++ M  L+
Sbjct: 476 LKNQEVQSLITALGTGIHDDFDISKLRYHKIVIMADADVDGQHIRTLLLTLLFRFMRPLV 535

Query: 568 EQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEM 623
           EQ H++L  PPL++I     +  YA+ +  +  +L    + G+   +   I R+KGLGEM
Sbjct: 536 EQGHVYLAQPPLYKIKWPRMEPQYAYSDRERDGLLRAGAEAGRKLPKDDGIQRYKGLGEM 595

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
            A +L ET MD + R LL+V ++          +  + LMG   + R  FI   A  +  
Sbjct: 596 NAEELWETTMDPSNRVLLQVTLDD----AAQADELFSVLMGEDVEARRSFITRNAKGVQF 651

Query: 684 VG 685
           + 
Sbjct: 652 LD 653


>gi|262341127|ref|YP_003283982.1| DNA gyrase subunit B [Blattabacterium sp. (Blattella germanica)
           str. Bge]
 gi|262272464|gb|ACY40372.1| DNA gyrase subunit B [Blattabacterium sp. (Blattella germanica)
           str. Bge]
          Length = 642

 Score =  604 bits (1556), Expect = e-170,   Method: Composition-based stats.
 Identities = 260/654 (39%), Positives = 389/654 (59%), Gaps = 29/654 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            +  + + NY A SI+ LEG+E +R+RP MYIG    + LHHL  EVIDN++DE +AG+ 
Sbjct: 1   MSKHNTTKNYTADSIQSLEGIEHIRLRPSMYIGDVGIRGLHHLVYEVIDNSVDEALAGFC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           N I V++  NGF+T++DNGRGIP++ H K   KS LE+++T + AGGKFD ++Y++SGGL
Sbjct: 61  NKIWVTIHKNGFITILDNGRGIPIDIHKK-EGKSALEVVMTKIGAGGKFDKNSYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVGIS VNALS++L VT+ R   I+ Q++ +G  L  ++   K  N +GT+I +  DP 
Sbjct: 120 HGVGISCVNALSEKLIVTIYRNRKIYQQEYLKGKALYSVKCLGKT-NMQGTKIHYLVDPS 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     ++   ++   +  A+L+  +      ++E  +       E F+   GLK YL 
Sbjct: 179 IFQT-ITYNYEIIVNRLKELAFLNKGLYLFLKDERENIK-------EHFFSKNGLKEYLT 230

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N+  ++  +   + EK  T    VE A+ +      +I SY N I T EGGTH SG
Sbjct: 231 ILDKNQESLTKNVIFIEGEKDNTI---VEVAMQYNTSFKEKIYSYVNNINTYEGGTHLSG 287

Query: 334 LRVALTRGIKKYAELTQ---NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
            R ALTR +KKY +      NK  + +  DD       I+SV + EP+F GQTKTKL + 
Sbjct: 288 FRRALTRTLKKYTDGYGILSNKDKVELTGDDFREGITAIISVRVMEPQFEGQTKTKLSNH 347

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRL 449
           +    V+  + +  + YL ++P +  K+++ VI      +  R+ +  + ++  I    L
Sbjct: 348 EVGGIVDKIVGEMLNSYLEEHPSDRKKIIDKVILAAKARQAARKAREFIQKRNPINNSIL 407

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADCS N     E+++VEGDSAGG+AKQ R+R+ QAVLPLRGKILNV  A   KI  
Sbjct: 408 PGKLADCSFNNPENCEIYLVEGDSAGGTAKQGRDRNFQAVLPLRGKILNVEKAMQYKIFE 467

Query: 510 NQQIMDLVQALGCRT-----RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           N++I ++  +LG        +  +  + LRY K+IIMTDAD+DG+HI++L+LT F++ M 
Sbjct: 468 NEEIKNIFASLGVSIETEEDQEIFNVKKLRYNKIIIMTDADIDGSHISTLILTLFFRYMK 527

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
            LIE+ H+++ +PPL+ I +G  S YA ++E ++ IL +    G+  + I R+KGLGEM 
Sbjct: 528 PLIEKGHIYIATPPLYLIRKGNHSQYAWNDEERENILNQLG--GRKSVNIQRYKGLGEMN 585

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           A QL ET M+   RTL +V I  D     +     + LMG +   R  FI++ A
Sbjct: 586 AEQLWETTMNPKNRTLRKVNIEND----SEADKIFSILMGDEVPPRRNFIEKNA 635


>gi|222152812|ref|YP_002561989.1| DNA gyrase subunit B [Streptococcus uberis 0140J]
 gi|222113625|emb|CAR41503.1| DNA gyrase subunit B [Streptococcus uberis 0140J]
          Length = 650

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 257/657 (39%), Positives = 377/657 (57%), Gaps = 27/657 (4%)

Query: 36  ANQSASDN---YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
            N++  +N   YDAS I++LEGLE VRMRPGMYIG T  + LHHL  E++DN++DE +AG
Sbjct: 4   ENKNLEENVQEYDASQIQVLEGLEAVRMRPGMYIGSTSSEGLHHLVWEIVDNSIDEALAG 63

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           +A  IEV ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SG
Sbjct: 64  FATHIEVFIEEDNSITVVDDGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSG 122

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG SVVNALS +L V V +   I  Q+F RG+ +  L       +  GT + F PD
Sbjct: 123 GLHGVGSSVVNALSTQLDVRVYKNGNIHFQEFKRGVVVDDLTIIGST-DLTGTTVHFTPD 181

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P+IF +   F+  +L K  Q  A+L+  ++   +  ++  E     +  +F++ GG+ +Y
Sbjct: 182 PEIFTETVEFNYDKLAKRIQELAFLNRGLRISIADKRKGIE-----QNHDFHYEGGISSY 236

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++   E + +I         E  G     VE A+ +       + S+ N I T EGGTHE
Sbjct: 237 VEYLNEKKDVIIETPIYTDGEMDGI---AVEVAMQYTTGYHENVMSFANNIHTHEGGTHE 293

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G R ALTR I  YA+  +   +   ++  +D+      ++SV    P+F GQTKTKL +
Sbjct: 294 QGFRTALTRVINDYAKKNKILKENDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGN 353

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448
            +  +       + F  +L++NP  A K+++  I  S+ R+  ++ RE   +K+ +    
Sbjct: 354 SEVVKITNRLFSEAFQRFLLENPQVARKIVDKGILASKARIAAKRAREVTRKKSGLEISN 413

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS N A   ELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI 
Sbjct: 414 LPGKLADCSSNDASQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKIL 473

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            N++I  L  A+G    S +     RY+K++IMTDADVDGAHI +LLLT  Y+ M  ++E
Sbjct: 474 ANEEIRSLFTAMGTGFGSDFDVTKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLE 533

Query: 569 QKHLFLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
             ++++  PP++ +  G +   Y       E   Q+ LE++   G+ K  + R+KGLGEM
Sbjct: 534 AGYVYIAQPPIYGVKVGNEIKQYIQPGINQETELQEALEKYS-VGRSKPSVQRYKGLGEM 592

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
              QL ET MD   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 593 DDHQLWETTMDPENRLMARVTVDD----AAEADKVFDMLMGDRVEPRREFIEENAVY 645


>gi|224531788|ref|ZP_03672420.1| DNA gyrase, B subunit [Borrelia valaisiana VS116]
 gi|224511253|gb|EEF81659.1| DNA gyrase, B subunit [Borrelia valaisiana VS116]
          Length = 634

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 244/647 (37%), Positives = 369/647 (57%), Gaps = 19/647 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY AS+I++L+GLE VR RPGMYIG      LHHL  EV+DN++DE +AG+ + I+V ++
Sbjct: 2   NYVASNIQVLKGLEAVRKRPGMYIGSVSVNGLHHLVYEVVDNSIDEALAGFCDKIDVVIN 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV+DNGRGIP + H +    S LE++LT LH+GGKF+  TY++SGGLHGVGISVV
Sbjct: 62  LDNTITVIDNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L V + R   IF Q FS+GIP S +E   +     GT++ F  D +IF     +
Sbjct: 121 NALSSFLEVYINRDGKIFRQTFSKGIPTSKVEIVGESS-ITGTKVNFLADSEIFETL-DY 178

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L K  +  A+L+ ++       +   EK        FYF GG+K+++     +   
Sbjct: 179 NFDVLEKRLKELAFLNDKICISIEDKRFGREKSSK-----FYFEGGIKSFVDYLTNDSKA 233

Query: 283 ISSEIFTGKTE-KKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
             SE +              ++W  ++ +    I S+ N I T EGGTH  G R  LT+ 
Sbjct: 234 FQSESYYIDGFLDDVIVNVGLKWTESYSDN---ILSFVNNINTREGGTHVMGFRSGLTKA 290

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + +  + ++   K   ++  DD       ++SV + EP+F GQTK+KL + + ++ VE  
Sbjct: 291 MNEAFKNSKISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIKKIVEII 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458
           + D     +  NP+E   +L   I+ +  R   RK R    +K A   L LPGKLADC+ 
Sbjct: 351 VYDHLLKIINLNPLEIDNILGKAIKAARAREAARKARESERKKNAFESLALPGKLADCAS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E++IVEGDSAGGSAK  RNR  QA+LPL GK+LNV     +K+  N +++ ++ 
Sbjct: 411 KNPLEREIYIVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           +LG      +  + LRY KVIIM DADVDG+HI +LLL FF++ M DLIE  ++++  PP
Sbjct: 471 SLGAGVGKTFDIKKLRYHKVIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYVYIAMPP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L++I    +  Y ++E+ K+K L+  +   +  I + R+KGLGEM  +QL ET MD  +R
Sbjct: 531 LYKINYDNRIYYFYEEKEKEKFLDSIETKNRNSISLQRYKGLGEMNPTQLWETTMDPARR 590

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +  + I+  +    + +     LMG   + R +FI++ A  + ++ 
Sbjct: 591 KMRLMNIDDAV----EAEKIFVTLMGDLVEPRKEFIEQNALNVINLD 633


>gi|325687830|gb|EGD29850.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           sanguinis SK72]
          Length = 649

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 257/658 (39%), Positives = 379/658 (57%), Gaps = 24/658 (3%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +        +  YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +A
Sbjct: 2   TEEKQQDIQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+A+ I+V ++ +  +TVVDNGRGIPV+   K   +  +E + T LHAGGKF    Y++S
Sbjct: 62  GFASHIQVFIEKDNSITVVDNGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVS 120

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG SVVNALS +L V V +   I  Q++ RG  ++ LE   +  ++ GT + F P
Sbjct: 121 GGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEYRRGHVVADLEIIGET-DRTGTTVHFTP 179

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           DP+IF +   FD  +L K  Q  A+L+  ++   +  ++  E     + +++++ GG+ +
Sbjct: 180 DPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKRDGME-----QSKDYHYEGGIAS 234

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           Y+Q   EN+ +I         E       TVE A+ +       + S+ N I T EGGTH
Sbjct: 235 YVQYINENKDVIFETPIYTDGEMDDI---TVEVAMQYTTGYHETVMSFANNIHTHEGGTH 291

Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           E G R ALTR I  YA+  +  +    ++  +D+      ++SV    P+F GQTKTKL 
Sbjct: 292 EQGFRTALTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLG 351

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447
           + +  +       + F  +L++NP  A K++E  I  S+ R+  ++ RE   +K+ +   
Sbjct: 352 NSEVVKITNRLFSEAFSDFLLENPAVARKIVEKGILASKARIAAKRAREVTRKKSGLEIS 411

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADCS N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI
Sbjct: 412 NLPGKLADCSSNDPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKI 471

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N++I  L  A+G    + +     RY+K++IMTDADVDGAHI +LLLT  Y+ M  ++
Sbjct: 472 LANEEIRSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVL 531

Query: 568 EQKHLFLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGE 622
           E   +++  PP++ +  G++   Y       EE  Q  L  +   G+ K  I R+KGLGE
Sbjct: 532 EAGFVYIAQPPIYGVKVGSEVKEYIQPGANQEEELQTALARYS-EGRSKPTIQRYKGLGE 590

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           M   QL ET M+   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 591 MDDHQLWETTMNPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 644


>gi|22536796|ref|NP_687647.1| DNA gyrase subunit B [Streptococcus agalactiae 2603V/R]
 gi|25010667|ref|NP_735062.1| DNA gyrase subunit B [Streptococcus agalactiae NEM316]
 gi|161486746|ref|YP_329336.2| DNA gyrase subunit B [Streptococcus agalactiae A909]
 gi|22533641|gb|AAM99519.1|AE014219_11 DNA gyrase, B subunit [Streptococcus agalactiae 2603V/R]
 gi|23095021|emb|CAD46247.1| DNA gyrase, subunit B [Streptococcus agalactiae NEM316]
 gi|319744658|gb|EFV97005.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           agalactiae ATCC 13813]
          Length = 650

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 254/662 (38%), Positives = 381/662 (57%), Gaps = 25/662 (3%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
                +  +  YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG
Sbjct: 4   ETKNMEQRAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAG 63

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           +A  I+V ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SG
Sbjct: 64  FAGHIKVYIEPDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSG 122

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG SVVNALS +L V V +   +  Q++ RG+ ++ LE      +  GT + F PD
Sbjct: 123 GLHGVGSSVVNALSTQLDVKVYKNGKVHYQEYQRGVVVNDLEIIGDT-DLSGTTVHFTPD 181

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P+IF +   FD  +L K  Q  A+L+  ++   S  +E  E         +++ GG+ +Y
Sbjct: 182 PEIFTETTVFDFDKLAKRIQELAFLNRGLRISISDKREGQEVEKE-----YHYEGGIGSY 236

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++   EN+ +I         E  G    +VE A+ +       + S+ N I T EGGTHE
Sbjct: 237 VEFINENKEVIFENPIYTDGELDGI---SVEVAMQYTTGYQETVMSFANNIHTHEGGTHE 293

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G R ALTR I  YA+  +   +   ++  +D+      ++SV    P+F GQTKTKL +
Sbjct: 294 QGFRTALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGN 353

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448
            +  +       + F+ +L++NP  A K++E  I  S+ R+  ++ RE   +K+ +    
Sbjct: 354 SEVVKITNRLFSEAFNRFLLENPQVAKKIVEKGILASKARIAAKRAREVTRKKSGLEISN 413

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS N A   ELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI 
Sbjct: 414 LPGKLADCSSNNAEMNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKIL 473

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            N++I  L  A+G    + +    +RY+K++IMTDADVDGAHI +LLLT  Y+ M  ++E
Sbjct: 474 ANEEIRSLFTAMGTGFGADFDVSKVRYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLE 533

Query: 569 QKHLFLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
             ++++  PP++ +  G++   Y       EE  ++ L+ +   G+ K  + R+KGLGEM
Sbjct: 534 AGYVYIAQPPIYGVKVGSEIKAYIQPGVNQEEELRQALDTYS-SGRSKPTVQRYKGLGEM 592

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
              QL ET MD   R + RV ++       +     + LMG + + R +FI+  A +  +
Sbjct: 593 DDHQLWETTMDPENRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEANAVY-SN 647

Query: 684 VG 685
           + 
Sbjct: 648 LD 649


>gi|159035681|ref|YP_001534934.1| DNA gyrase, B subunit [Salinispora arenicola CNS-205]
 gi|157914516|gb|ABV95943.1| DNA gyrase, B subunit [Salinispora arenicola CNS-205]
          Length = 648

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 241/655 (36%), Positives = 359/655 (54%), Gaps = 19/655 (2%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
                Y A SI +LEGLE VR RPGMYIG T E+ LHHL  EV+DNA+DE +AGY + I+
Sbjct: 4   QDKQEYGAESITVLEGLEAVRKRPGMYIGSTGERGLHHLVWEVVDNAVDEALAGYCDTID 63

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V L  +G + V DNGRG PV+ HPK   K  +E+ LT LHAGGKFD   Y +SGGLHGVG
Sbjct: 64  VVLLADGGVRVTDNGRGFPVDPHPKL-KKPGVEVALTVLHAGGKFDGKAYAVSGGLHGVG 122

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS  + V + +    + Q ++   P    +   +  +  G+ ++F PDP +F  
Sbjct: 123 VSVVNALSTRMAVEIQKDGYFWRQSYTDSKPSPLEK--GEPTDATGSAVSFWPDPAVFET 180

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              FD   + +  Q  A+L+  +   +  ++  A++ G   +  F + GG+  +++    
Sbjct: 181 -VDFDFQTIYRRLQEMAFLNRGLTIHFLDERVAADEDGKMREVTFCYKGGIADFVRHLNA 239

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           +++ I   +    TE+ G    +VE A+ W E     + ++ N I T EGGTHE G R A
Sbjct: 240 SKTPIHKSVVEFGTEEDG---MSVEIAMQWNESYGESVYTFANNINTHEGGTHEEGFRAA 296

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           LT  I +Y    +  K    +  +D+      I+SV +  P+F GQTKTKL +   +  V
Sbjct: 297 LTSVINRYGADKRLLKSDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTPVKSFV 356

Query: 397 ENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           +    +    +L +NP EA  ++ +           ++ ++   RK+ +    +PGKLAD
Sbjct: 357 QRVCNEWLVDWLDRNPAEAKVIITKASQAARARVAAQQARKLARRKSLLESGSMPGKLAD 416

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C        E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  
Sbjct: 417 CQSTDPRECEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQA 476

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           L+ ALG      +  E LRY K+++M DADVDG HI +LLLT  ++ M  L+E  H++L 
Sbjct: 477 LITALGTGIHDDFDIEKLRYHKIVLMADADVDGQHIQTLLLTLLFRFMRPLVELGHVYLA 536

Query: 576 SPPLFRIT---QGTKSVYAHDEEHKQKI--LEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           +PPL++I    +G  + YA+ +  +  +  L + KK      +I RFKGLGEM   +L E
Sbjct: 537 APPLYKIKWNRKGDDAQYAYSDRERDGLIALRQQKKPNAKPDDIQRFKGLGEMNYPELWE 596

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T M+   RTL +V ++          +  + LMG   + R  FIQ  A  +  + 
Sbjct: 597 TTMNPATRTLRQVTLDD----AATADELFSVLMGEDVEARRSFIQRNAKDVRFLD 647


>gi|15672961|ref|NP_267135.1| DNA topoisomerase IV subunit B [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723922|gb|AAK05077.1|AE006332_6 topoisomerase IV subunit B [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 644

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 245/653 (37%), Positives = 365/653 (55%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NYD S+I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ N I V++
Sbjct: 6   NNYDDSAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGNRISVTI 65

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G L+V D GRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 66  NADGSLSVEDEGRGMPVGKH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 123

Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R  T++ Q+F  G  P + L K  K  ++K GT++TF PD  IF   
Sbjct: 124 VNALSTWLEVEITRDGTVYRQRFENGGHPATTLVKIGKAPKSKTGTKVTFMPDSSIFSTT 183

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V       +         EKEEF++  G++ ++    E+
Sbjct: 184 -EFKYNIISERLNESAFLLKEVTISLEDKR-------TDEKEEFHYENGVQDFVSYLNED 235

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  ++  +   + ++ G     VE A+ + +     I S+ N + T +GGTHE+GL+ A+
Sbjct: 236 KDSLTPVL-YFEGKQDG---FEVEVALQYNDGYSENILSFVNNVRTKDGGTHEAGLKTAI 291

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ + +YA       ++  ++   D       +LSV I     +F GQTK KL S  A+ 
Sbjct: 292 TKAMNEYARKVNLLKEKDKNLEGSDYREGLTVVLSVLIPEEHLQFEGQTKDKLGSPLARP 351

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451
            V++ + +    YL++N   A  L+   I+  E R   RK RE +R     K       G
Sbjct: 352 VVDSLVSEKLSFYLMENGELAQNLIRKAIKAREAREAARKAREDSRNGKKSKKDKGLLSG 411

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL        +  EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I  N+
Sbjct: 412 KLTPAQTKNPNKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNE 471

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +   D  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 472 EINTMIYTIGAGVGADFTLADRNYDKIIIMTDADTDGAHIQTLLLTFFYRYMKPLVEAGH 531

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     K  YA  +    ++ ++F K+      + R+KGLGEM A Q
Sbjct: 532 VYIALPPLYKMSEGKGKKEKIEYAWTDGELAELRKQFGKNA----NLQRYKGLGEMNADQ 587

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET MD   RTL++V I+         +  ++ LMG K + R K+I+    F
Sbjct: 588 LWETTMDPETRTLIQVTIDD----AAQAEKRVSVLMGDKVEPRRKWIENNVKF 636


>gi|291297544|ref|YP_003508822.1| DNA gyrase subunit B [Stackebrandtia nassauensis DSM 44728]
 gi|290566764|gb|ADD39729.1| DNA gyrase, B subunit [Stackebrandtia nassauensis DSM 44728]
          Length = 656

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 235/663 (35%), Positives = 369/663 (55%), Gaps = 21/663 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            A +   D+Y+A S+ +LEGLE VR RPGMYIG T E+ LHHL  EV+DNA+DE +AG+ 
Sbjct: 2   AAAEKKQDDYNAGSLTVLEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGHC 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I+V++  +  + V+DNGRG PV+ HPK   K  +E+ LT LHAGGKFD+ +Y +SGGL
Sbjct: 62  DTIDVTILADNGVRVIDNGRGFPVDLHPKL-KKPGVEVALTVLHAGGKFDSKSYAVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVGISVVNALS  + + + R   +++Q +   +P     ++ +   K GT ++F PD  
Sbjct: 121 HGVGISVVNALSTRIEMEIQRDGFVWTQSYKHSVPGPL--EQGEKSRKTGTSVSFWPDDT 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI--AEKYGIPEKEEFYFPGGLKTY 272
           IF     ++   + +  Q  A+L+  +K     ++    +E+   P +  F +  G+  +
Sbjct: 179 IFETTV-YNFETIYRRLQEYAFLNKNLKIVLRDERPRPESEEDTKPREVVFQYAEGIADF 237

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++     +S +   +   + + +     ++E A+ W E     + ++ N I T EGGTHE
Sbjct: 238 VRHLNATKSPLHKSVVMFEAKSE-EDGSSLEVAMQWNESYGESVYTFANAINTHEGGTHE 296

Query: 332 SGLRVALTRGIKKYAELTQNKRAISI-ISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
            G R ALT  + KY    +  +       DD+      I+SV + EP+F GQTKTKL + 
Sbjct: 297 EGFRAALTTCVNKYGTDRKLLKGTDRLSGDDIREGLAAIVSVKLVEPQFEGQTKTKLGNT 356

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRL 449
           + +  V+    +    +  +NP EA  ++      ++ R    + R++ R+ + +    +
Sbjct: 357 EVKSFVQRVCNEWLVDWFDRNPSEAKTIITKASAAAQARKAAAQARKLARRKSLLETSSM 416

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC       +E+F+VEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +KI  
Sbjct: 417 PGKLADCQSTDPSESEMFVVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDKILK 476

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N ++  ++ ALG      +  E LRY K+I+M+DADVDG HI +LLLT  ++ M  L+E 
Sbjct: 477 NNEVQAMITALGTGIHDDFDIEKLRYHKIILMSDADVDGQHINTLLLTLLFRMMRPLVEM 536

Query: 570 KHLFLISPPLFRIT---QGTKSVYAHDEEHKQKILE----EFKKHGKGKIEISRFKGLGE 622
            H+++  PPL++I    +G +  YA  +  +  ++E    + K   +    I R+KGLGE
Sbjct: 537 GHVYMSQPPLYKIKWNRKGDQVEYAFSDRERDGLIEMGMSQGKPDPRKYDGIQRYKGLGE 596

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           M  ++L ET M+   R LL+V ++          +  + LMG   + R  FIQ  A  + 
Sbjct: 597 MNYTELWETTMNPATRALLQVTLDD----AATADELFSVLMGEDVETRRNFIQRNAKDVR 652

Query: 683 DVG 685
            + 
Sbjct: 653 FLD 655


>gi|326406524|gb|ADZ63595.1| topoisomerase IV subunit B [Lactococcus lactis subsp. lactis CV56]
          Length = 644

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 245/653 (37%), Positives = 365/653 (55%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NYD S+I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ N I V++
Sbjct: 6   NNYDDSAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGNRISVTI 65

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G L+V D GRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 66  NADGSLSVEDEGRGMPVGKH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 123

Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R  T++ Q+F  G  P + L K  K  ++K GT++TF PD  IF   
Sbjct: 124 VNALSTWLEVEITRDGTVYRQRFENGGHPATTLVKIGKAPKSKTGTKVTFMPDSSIFSTT 183

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V       +         EKEEF++  G++ ++    E+
Sbjct: 184 -EFKYNIISERLNESAFLLKEVTISLEDKR-------TDEKEEFHYENGVQDFVSYLNED 235

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  ++  +   + ++ G     VE A+ + +     I S+ N + T +GGTHE+GL+ A+
Sbjct: 236 KDSLTPVL-YFEGKQDG---FEVEVALQYNDGYSENILSFVNNVRTKDGGTHEAGLKTAI 291

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ + +YA       ++  ++   D       +LSV I     +F GQTK KL S  A+ 
Sbjct: 292 TKAMNEYARKVNLLKEKDKNLEGSDYREGLTAVLSVLIPEEHLQFEGQTKDKLGSPLARP 351

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451
            V++ + +    YL++N   A  L+   I+  E R   RK RE +R     K       G
Sbjct: 352 VVDSLVSEKLSFYLMENGELAQNLIRKAIKAREAREAARKAREDSRNGKKSKKDKGLLSG 411

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL        +  EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I  N+
Sbjct: 412 KLTPAQTKNPNKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNE 471

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +   D  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 472 EINTMIYTIGAGVGADFTLADRNYDKIIIMTDADTDGAHIQTLLLTFFYRYMKPLVEAGH 531

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     K  YA  +    ++ ++F K+      + R+KGLGEM A Q
Sbjct: 532 VYIALPPLYKMSEGKGKKEKIEYAWTDGELAELRKQFGKNA----NLQRYKGLGEMNADQ 587

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET MD   RTL++V I+         +  ++ LMG K + R K+I+    F
Sbjct: 588 LWETTMDPETRTLIQVTIDD----AAQAEKRVSVLMGDKVEPRRKWIENNVKF 636


>gi|85705733|ref|ZP_01036830.1| DNA topoisomerase IV subunit B [Roseovarius sp. 217]
 gi|85669723|gb|EAQ24587.1| DNA topoisomerase IV subunit B [Roseovarius sp. 217]
          Length = 662

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 340/667 (50%), Positives = 446/667 (66%), Gaps = 10/667 (1%)

Query: 22  KLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEV 81
              +  +        + +   +YDASSI++LE +E VR+RPGMYIGG D++ALHH+ +E+
Sbjct: 2   PPNQQKKSSGMNDLLSPTPKSDYDASSIQVLEDMEHVRLRPGMYIGGKDDRALHHMVAEI 61

Query: 82  IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141
           IDN+MDE +AG+A  IEV L  NG ++V DNGRGIPV+ HPK P KS LEII  TL+AGG
Sbjct: 62  IDNSMDEAVAGHATWIEVELHANGHVSVRDNGRGIPVDPHPKDPKKSALEIIFCTLNAGG 121

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KF   +Y+ SGGLHGVG SVVNALSD L V VAR   ++  +FSRG+P +PL K     N
Sbjct: 122 KFSGDSYQTSGGLHGVGSSVVNALSDHLRVEVARNRELYMMEFSRGMPQAPLVKIGAAPN 181

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           +RGT +TF PDP+IFG       ARL KM +SKAYL   V+  W  +    E    P + 
Sbjct: 182 RRGTSVTFHPDPEIFGS-LTLKPARLFKMARSKAYLFSGVEIRWKTEITDGE---TPTEA 237

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR--GTVEWAIAWCE-ENPEITSY 318
            F FPGGL  YL   L   +  +   F G  + +  +   G VEWAI W    +  I SY
Sbjct: 238 TFKFPGGLADYLGETLNGATTYAERPFAGTVDFRDKYNVPGKVEWAINWTPARDGFIQSY 297

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPE 378
           CNT+ T EGGTHE+G   A+ +GIK Y EL+ N++A  I  +DL+     ++S FIREPE
Sbjct: 298 CNTVPTPEGGTHEAGFWAAILKGIKAYGELSNNRKAAQITREDLLAGGCALVSCFIREPE 357

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
           F GQTK +L + DA R VE A+RD FD++L  +   A  +L++++ R+EERLRRR+++E 
Sbjct: 358 FVGQTKDRLATTDAARMVEGAVRDHFDNWLAADTKSAGAILDFLVLRAEERLRRRQEKET 417

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RKTA +KLRLPGKL DCS +   GTELFIVEGDSAGGSAK  R+R  QA+LPLRGKILN
Sbjct: 418 QRKTATKKLRLPGKLVDCSSSTREGTELFIVEGDSAGGSAKMGRDRKIQALLPLRGKILN 477

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A S K+ +NQ+I DL QALG    +++  +DLRY+K+IIMTDADVDGAHIA+LL+TF
Sbjct: 478 VLGAASSKLGSNQEINDLTQALGVGLGTKFNLDDLRYDKIIIMTDADVDGAHIAALLMTF 537

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           F+ +M  +I+  HL+L  PPL+R+TQG+K VY  DE  +   L +    GKGKI++SRFK
Sbjct: 538 FFTQMRPMIDAGHLYLACPPLYRLTQGSKRVYCLDEAERDVWLAK-GLGGKGKIDVSRFK 596

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           GLGEM A  LKET MD   R L+RV I++D      T D + +LMG K + RF++I E A
Sbjct: 597 GLGEMDAKDLKETTMDPRSRKLIRVTIDEDE--PGQTSDLVERLMGKKPELRFQYISENA 654

Query: 679 SFIDDVG 685
            F++++ 
Sbjct: 655 RFVEELD 661


>gi|284165545|ref|YP_003403824.1| DNA gyrase B subunit [Haloterrigena turkmenica DSM 5511]
 gi|284015200|gb|ADB61151.1| DNA gyrase, B subunit [Haloterrigena turkmenica DSM 5511]
          Length = 644

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 248/653 (37%), Positives = 376/653 (57%), Gaps = 17/653 (2%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           S    Y A  I++LEGLE VR RP MYIG TD + LHHL  EV+DN++DE +AG+ + I 
Sbjct: 2   SQESEYGAGQIQVLEGLEAVRKRPAMYIGSTDSRGLHHLVYEVVDNSIDEALAGHCDDIT 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           VS++ +G ++V D+GRGIPV+ H ++ ++  LE+ILT LHAGGKFDN +Y++SGGLHGVG
Sbjct: 62  VSINDDGSVSVADDGRGIPVDTHDEY-DRPALEVILTVLHAGGKFDNKSYQVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE--KKEKVRNKRGTRITFRPDPKIF 216
           +SVVNALS+ L   V R  ++F   F  G P+  +E  +  +   + GT+I F PD  IF
Sbjct: 121 VSVVNALSERLEAEVKRDGSVFRHAFEAGEPVGDMERVRDMEPDEETGTQIRFWPDTGIF 180

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                F  + L    +  A+L+  V      ++E A +     +E + + GG++ +++  
Sbjct: 181 ES-GEFSFSTLSNRLRELAFLNSGVHITLRDEREEATEGDDLVEETYEYQGGIREFVEYL 239

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHESGLR 335
            E RS +  ++   + E++      VE A+   EE    I ++ N I T EGGTH +G +
Sbjct: 240 NETRSAMHDDVIYFEAEEQNIQ---VEVAMQATEELQGSIHAFANNINTREGGTHLTGFK 296

Query: 336 VALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR +  YA+          ++  +D+      ++SV   +P+F GQTKTKL + + +
Sbjct: 297 TALTRTVNDYAKDNDMLGDLEDNLKGEDIREGLTAVISVKHPDPQFEGQTKTKLGNSEVR 356

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
             VE+++ +    Y  ++P  A  ++   +E ++ R   +K  E   RK+A+    LPGK
Sbjct: 357 GIVESSMHEGLGTYFEEHPDTAQAIVTKAVEAAKARKAAQKAEELTRRKSALESTSLPGK 416

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC        ELFI EGDSAGGSAKQARN   QA+LP++GKILNV     ++I  N +
Sbjct: 417 LADCQTKDPDEAELFIAEGDSAGGSAKQARNPDFQAILPIKGKILNVEKHRLDRILENDE 476

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I +++ A+G     ++  ED+RY+K+I+ TDADVDGAHI +LLLTFFY+ M  L+E  ++
Sbjct: 477 IRNMITAIGAGIGDEFDVEDVRYKKIIMATDADVDGAHIRTLLLTFFYRHMRPLLEGGYV 536

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           +   PPL+RI    ++  A  E  + +I+ E         ++ RFKGLGEM   QL +T 
Sbjct: 537 YATQPPLYRIRYRGETYDAMTEAERDEIVAEKCDGNPS--QVQRFKGLGEMNPQQLWDTT 594

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           MD + R L ++ I              + LMG   + R +FI++ A   + + 
Sbjct: 595 MDPDNRILKQITIED----AAAADKMFSVLMGDAVEPRKQFIKDNAPEAEWID 643


>gi|330994149|ref|ZP_08318077.1| DNA gyrase subunit B [Gluconacetobacter sp. SXCC-1]
 gi|329758616|gb|EGG75132.1| DNA gyrase subunit B [Gluconacetobacter sp. SXCC-1]
          Length = 680

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 356/686 (51%), Positives = 469/686 (68%), Gaps = 13/686 (1%)

Query: 5   SIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGM 64
           + DLFS          +  ++    P  PA   ++  D YDAS+I +LEGLEPVR RPGM
Sbjct: 2   NDDLFS----APASPGKPTRRKVSPPAMPADNAKNGPDTYDASAIEVLEGLEPVRRRPGM 57

Query: 65  YIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKF 124
           YIGGTDE A HHL SE++DNAMDE +AG+A  I+VSL+    LT+ DNGRGIPV+ HP+F
Sbjct: 58  YIGGTDETAYHHLASEILDNAMDEAVAGHATTIDVSLEAGDCLTIRDNGRGIPVDPHPRF 117

Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184
           P++S LE+ILTTLHAGGKF    Y  SGGLHGVG SVVNAL+  + V +AR   ++ Q +
Sbjct: 118 PDRSALEVILTTLHAGGKFSGKAYATSGGLHGVGSSVVNALASRMEVEIARDRELWRQVY 177

Query: 185 SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244
            RG PLS +EK   V N+RGT+I F PDP+IFG    F  ARL ++ +SKA+L   V   
Sbjct: 178 ERGHPLSGVEKIGPVNNRRGTQIRFTPDPEIFGRLH-FSPARLYRLCRSKAFLFRGVTIR 236

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----KKGTHRG 300
           WSCD  + +   IP +   +FPGGL   L+ +L +++ + ++++ G  +      G+  G
Sbjct: 237 WSCDPSLIKGDDIPAEAVLHFPGGLADSLRDELGDKAALLTDLWAGDADLPTAPDGSDTG 296

Query: 301 TVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359
            +EWAIA+ E+      SYCNTI T  GGTHE+G R AL +G++ + E   NKRA SI +
Sbjct: 297 RMEWAIAFLEQGTAALASYCNTIPTPNGGTHETGFRNALLKGLRNWGEQRANKRAASINA 356

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD+M      LSVFIR+P+F GQTK KL S +A + VE ALRD FDH+L  NP +A  LL
Sbjct: 357 DDIMGCIAAKLSVFIRDPQFQGQTKEKLTSSEASKLVETALRDRFDHWLAANPPQADNLL 416

Query: 420 EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
            +V+ER+EERLRR++Q+E  RK+A R+LRLPGKL DC++  A  TE+F+VEGDSAGGSAK
Sbjct: 417 AFVVERAEERLRRKEQKETPRKSATRRLRLPGKLTDCTRENAAETEIFLVEGDSAGGSAK 476

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
           QARNR  QAVLPLRGKILNVASA +EK+R NQ++ DLV+ALGC    ++    LRY ++I
Sbjct: 477 QARNRETQAVLPLRGKILNVASASTEKLRGNQELRDLVEALGCGMGERFDATKLRYGRII 536

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599
           IMTDADVDGAHIASLL+TFFY+E+  LI   HL+L  PPL+R+TQG +S+YA D+  +++
Sbjct: 537 IMTDADVDGAHIASLLMTFFYRELPGLIRGGHLYLAQPPLYRLTQGGRSIYAMDDADRER 596

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
            L++  K    K+E+SRFKGLGEM    LK+T MD   RTLL+V           T + +
Sbjct: 597 KLKKDFK-PNSKVEVSRFKGLGEMPPGDLKQTTMDPRHRTLLKVITP--PEDRALTLERV 653

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
             LMG KA+ RF+FIQ+ A  +D++ 
Sbjct: 654 EHLMGRKAELRFRFIQDHARQVDNLD 679


>gi|290958999|ref|YP_003490181.1| DNA gyrase subunit B [Streptomyces scabiei 87.22]
 gi|260648525|emb|CBG71636.1| DNA gyrase subunit B [Streptomyces scabiei 87.22]
          Length = 681

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 253/686 (36%), Positives = 384/686 (55%), Gaps = 25/686 (3%)

Query: 18  GSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHL 77
             S    ++    ++PA   ++++  YDAS+I +LEGL+ VR RPGMYIG T E+ LHHL
Sbjct: 2   ADSGNPNENILSTEAPAGVAEASATAYDASAITVLEGLDAVRKRPGMYIGSTGERGLHHL 61

Query: 78  FSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137
             EV+DN++DE +AG+A+ I+V++  +G + VVDNGRGIPV   P    K  +E++LT L
Sbjct: 62  VQEVVDNSVDEALAGHADTIDVTILADGGVRVVDNGRGIPVGIVP-SEGKPAVEVVLTVL 120

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKF    Y +SGGLHGVG+SVVNALS  + V +      ++Q +  G+P +PL + E
Sbjct: 121 HAGGKFGGGGYAVSGGLHGVGVSVVNALSTRVSVEIKTDGHRWTQDYKLGVPTAPLAQHE 180

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI------ 251
              ++ GT +TF  DP IF     +    L +  Q  A+L+  ++   + ++E       
Sbjct: 181 AT-DEHGTTVTFWADPDIFET-TEYSFETLSRRFQEMAFLNKGLRINLADERESAKATAG 238

Query: 252 -----AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
                 ++    +   +++ GG+  +++     +  +          +      ++E A+
Sbjct: 239 ADEAGEDEKHEVKSVSYHYEGGIVDFVKYLNSRKGDVVHPTVIDLEAEDKDRSLSLELAM 298

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLM 363
            W       + S+ N I T EGGTHE G R ALT  + KYA   +   ++  ++  DD+ 
Sbjct: 299 QWNSGYTEGVYSFANIIHTHEGGTHEEGFRAALTNLVNKYAREKKLLREKDDNLTGDDIR 358

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                I+SV + EP+F GQTKTKL + + +  V+  + +  + +L +NP+EA  ++   I
Sbjct: 359 EGLTAIISVKLSEPQFEGQTKTKLGNTEVKTFVQKVVYEHLNDWLDRNPVEAADIVRKGI 418

Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           + +  R+  RK R++ R+   +    LPGKL+DC  N     E+FIVEGDSAGGSAK  R
Sbjct: 419 QAATARVAARKARDLTRRKGLLETASLPGKLSDCQSNDPIKCEIFIVEGDSAGGSAKSGR 478

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           N   QA+LP+RGKILNV  A  +KI  NQ+I  L+ A G      +  E LRY K+I+M 
Sbjct: 479 NPEYQAILPIRGKILNVEKARIDKILQNQEIQALISAFGTGVHEDFDIEKLRYHKIILMA 538

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKIL 601
           DADVDG HI +LLLTF ++ M  L+E  H+FL  PPL++I  G + + YA+ +  +  ++
Sbjct: 539 DADVDGQHINTLLLTFLFRFMRPLVEAGHVFLSRPPLYKIKWGREDIEYAYSDRERDALI 598

Query: 602 EEFKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
           E  ++ GK   +  I RFKGLGEM A +L+ T MD   R L +V ++          D  
Sbjct: 599 EMGRQRGKRIREDSIQRFKGLGEMNAEELRITTMDQEHRVLGQVTLDD----AAQADDLF 654

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
           + LMG   + R  FIQ  A  +  + 
Sbjct: 655 SVLMGEDVEARRAFIQRNAKDVRFLD 680


>gi|327489313|gb|EGF21106.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           sanguinis SK1058]
          Length = 649

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 257/658 (39%), Positives = 378/658 (57%), Gaps = 24/658 (3%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +        +  YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +A
Sbjct: 2   TEEKQQDIQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+A+ I+V ++ +  +TVVDNGRGIPV+   K   +  +E + T LHAGGKF    Y++S
Sbjct: 62  GFASHIQVFIEKDNSITVVDNGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVS 120

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG SVVNALS +L V V +   I  Q++ RG  ++ LE   +  ++ GT + F P
Sbjct: 121 GGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEYRRGHVVADLEIIGET-DRTGTTVHFTP 179

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           DP+IF +   FD  +L K  Q  A+L+  ++   +  ++  E     + +++++ GG+ +
Sbjct: 180 DPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKRDGME-----QVKDYHYEGGIAS 234

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           Y+Q   EN+ +I         E       TVE A+ +       + S+ N I T EGGTH
Sbjct: 235 YVQYINENKDVIFETPIYTDGEMDDI---TVEVAMQYTTGYHETVMSFANNIHTHEGGTH 291

Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           E G R ALTR I  YA+  +  +    ++  +D+      ++SV    P+F GQTKTKL 
Sbjct: 292 EQGFRTALTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLG 351

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447
           + +  +       + F  +L++NP  A K++E  I  S+ R+  ++ RE   +K+ +   
Sbjct: 352 NSEVVKITNRLFSEAFSDFLLENPAVARKIVEKGILASKARIAAKRAREVTRKKSGLEIS 411

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADCS N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI
Sbjct: 412 NLPGKLADCSSNDPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKI 471

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N +I  L  A+G    + +     RY+K++IMTDADVDGAHI +LLLT  Y+ M  ++
Sbjct: 472 LANGEIRSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVL 531

Query: 568 EQKHLFLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGE 622
           E   +++  PP++ +  G++   Y       EE  Q  L  +   G+ K  I R+KGLGE
Sbjct: 532 EAGFVYIAQPPIYGVKVGSEVKEYIQPGANQEEELQAALARYS-EGRSKPTIQRYKGLGE 590

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           M   QL ET M+   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 591 MDDHQLWETTMNPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 644


>gi|85716303|ref|ZP_01047276.1| gram negative topoisomerase IV, subunit B [Nitrobacter sp. Nb-311A]
 gi|85696819|gb|EAQ34704.1| gram negative topoisomerase IV, subunit B [Nitrobacter sp. Nb-311A]
          Length = 681

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 383/677 (56%), Positives = 488/677 (72%), Gaps = 9/677 (1%)

Query: 14  PQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKA 73
                SS  L  + +    P      A   Y A+ I +LEGLEPVR RPGMYIGGTDEKA
Sbjct: 8   NTKVKSSNDLFSASKAKGHPPARASGAETGYTAADIEVLEGLEPVRRRPGMYIGGTDEKA 67

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133
           LHHLF+EVIDNAMDE +AG+A  I V L  +GFLTV DNGRGIPV+ HPKFP KS LE+I
Sbjct: 68  LHHLFAEVIDNAMDEALAGHATFIVVELATDGFLTVTDNGRGIPVDPHPKFPKKSALEVI 127

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           + TLH+GGKFD+  YE SGGLHGVG+SVVNALS  L V VAR   ++   F RG P   L
Sbjct: 128 MCTLHSGGKFDSKVYETSGGLHGVGVSVVNALSSRLEVEVARSQNLYKMTFERGHPKGKL 187

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           E   ++ N+RGT I F+PD +IFG KA F   RL KMT+SKAYL G V+  W C  E+ +
Sbjct: 188 EDLGRIANRRGTTIRFKPDTEIFGAKAAFKPQRLFKMTRSKAYLFGGVEIRWRCAPELLK 247

Query: 254 K-YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EE 311
               IP +  F+FPGGLK YL   +   +L+  +IF+GK+ + G H G  EWA+AW  + 
Sbjct: 248 GLDDIPAEATFHFPGGLKDYLAAAIHKDTLVHPDIFSGKSGRNGAH-GACEWAVAWTADA 306

Query: 312 NPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGIL 370
           +  ++SYCNT+ T +GGTHESGLR AL RG+K +AE     KRA SI S+D+M+ A  +L
Sbjct: 307 DGFLSSYCNTVPTPDGGTHESGLRSALLRGLKDHAERVGYGKRAASITSEDVMVGAAVML 366

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SVF+REPEF GQTK +L + +A R VE A++DPFDH+L  NP++A KLL++VIER++ERL
Sbjct: 367 SVFVREPEFQGQTKDRLATSEASRIVEQAIKDPFDHWLSGNPVQANKLLDFVIERADERL 426

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
           RRR ++E +RK+A++KLRLPGKLADC+     G+ELFIVEGDSAGGSAKQAR+R  QAVL
Sbjct: 427 RRRAEKETSRKSAVKKLRLPGKLADCTNTATEGSELFIVEGDSAGGSAKQARDRKTQAVL 486

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           PLRGKILNVASA  +K+  N Q+ DL+QALGC T + YREEDLRY +VIIMTDADVDGAH
Sbjct: 487 PLRGKILNVASATRDKVTANAQLADLIQALGCGTGTNYREEDLRYSRVIIMTDADVDGAH 546

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           IASLL+TFFY++M  LI++ HL+L  PPL+R+T G+K+VYA D+  K  +L+  + +   
Sbjct: 547 IASLLITFFYRQMPRLIDEGHLYLAVPPLYRLTHGSKTVYARDDADKDALLKS-EFNANA 605

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADER 670
           K+++ RFKGLGEM+ +QLKET MD  KRT+LRV +    +  +DT DS+ +LMGTKA+ R
Sbjct: 606 KVDVGRFKGLGEMMPAQLKETTMDPAKRTMLRVML--LADDREDTADSVERLMGTKAEAR 663

Query: 671 FKFIQERASFI--DDVG 685
           F FI ++A F   D + 
Sbjct: 664 FAFISDKAEFASEDMLD 680


>gi|290889525|ref|ZP_06552615.1| hypothetical protein AWRIB429_0005 [Oenococcus oeni AWRIB429]
 gi|290480723|gb|EFD89357.1| hypothetical protein AWRIB429_0005 [Oenococcus oeni AWRIB429]
          Length = 652

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 250/656 (38%), Positives = 372/656 (56%), Gaps = 22/656 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
             S +++Y  SSI+ILEGLE VR RPGMYIG T    LHHL  E+IDN +DE +AG+A+ 
Sbjct: 11  APSDNNSYGGSSIQILEGLEAVRKRPGMYIGSTASSGLHHLVWEIIDNGIDEALAGFAHH 70

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           + ++++ +  +T+ D+GRG+PVE  PK   +  +E + T LHAGGKFD+ +Y++SGGLHG
Sbjct: 71  VTLTIEKDNSITITDDGRGVPVEIQPK-TGRPAMEAVFTILHAGGKFDSKSYKVSGGLHG 129

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKI 215
           VG SVVNALS E+ V V R N I+   F RG   + ++  ++    KRGT + F PDP I
Sbjct: 130 VGASVVNALSKEMDVRVYRDNKIYYMDFERGHIKTEMKLLDEPMRLKRGTIVHFAPDPDI 189

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   FD   L    +  A+L+  ++   +  +    K      E F + GG+  Y++ 
Sbjct: 190 FRETIVFDYRTLASRIRELAFLNKGLRLSITDKRVDPVKN-----ESFMYEGGIAEYVKF 244

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGL 334
             +N+  +  E    + E+ G     VE A+ + +     + S+ N I T EGGTHE+G 
Sbjct: 245 LNKNKQPLFPEPVYVEGEENGIQ---VEVALQYTDAVAETLMSFANNIHTHEGGTHETGF 301

Query: 335 RVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           ++ALTR I  YA+     +        +D+      I+S+   +P+F GQTKTKL + DA
Sbjct: 302 KMALTRIINDYAKKKGILKDSDDPLSGEDVREGITAIVSIKHPDPQFEGQTKTKLGNTDA 361

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           Q+ V +     F+ ++++NP  A  +    +I        ++ +    +K+ +    L G
Sbjct: 362 QQVVNHQFSTIFNRFMMENPETARAIANKGLIASKARAAAKKARDLTRKKSGLEISALAG 421

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLAD +      +ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  +K+  N+
Sbjct: 422 KLADNTSRDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKATLDKVLANE 481

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  L  A+G     ++      Y KVIIMTDADVDGAHI +LLLT F++ M  LI+  +
Sbjct: 482 EIRSLFTAMGTGFGEEFDISKAHYHKVIIMTDADVDGAHIRTLLLTLFFRYMRPLIDAGY 541

Query: 572 LFLISPPLFRITQGT--KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +++  PPL+ +  G   + VY   +E   +         K +  I R+KGLGEM A QL 
Sbjct: 542 IYIAQPPLYGVAIGNSDQRVYLDSDEELDQYTATLPASPKPR--IQRYKGLGEMDAVQLW 599

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +T MD   R LLRV    D     +   + + LMG + + R +FI++ A F++D+ 
Sbjct: 600 DTTMDPKHRRLLRV----DPEYQPEVDTTFDMLMGDRVEPRREFIEDNAQFVEDLD 651


>gi|146319164|ref|YP_001198876.1| DNA gyrase subunit B [Streptococcus suis 05ZYH33]
 gi|253752208|ref|YP_003025349.1| DNA gyrase subunit B [Streptococcus suis SC84]
 gi|253754034|ref|YP_003027175.1| DNA gyrase subunit B [Streptococcus suis P1/7]
 gi|253755968|ref|YP_003029108.1| DNA gyrase subunit B [Streptococcus suis BM407]
 gi|145689970|gb|ABP90476.1| DNA gyrase [Streptococcus suis 05ZYH33]
 gi|226237519|dbj|BAH47268.1| DNA gyrase subunit B [Streptococcus suis]
 gi|251816497|emb|CAZ52133.1| DNA gyrase subunit B [Streptococcus suis SC84]
 gi|251818432|emb|CAZ56261.1| DNA gyrase subunit B [Streptococcus suis BM407]
 gi|251820280|emb|CAR46765.1| DNA gyrase subunit B [Streptococcus suis P1/7]
 gi|319758597|gb|ADV70539.1| DNA gyrase subunit B [Streptococcus suis JS14]
          Length = 650

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 261/652 (40%), Positives = 382/652 (58%), Gaps = 24/652 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           Q  +  YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I
Sbjct: 9   QEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFADKI 68

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           EV ++ +  +TV+DNGRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGV
Sbjct: 69  EVYIEPDNSITVIDNGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS +L V V +   ++ Q++ RG  ++ LE   +  ++ GT + F PDP+IF 
Sbjct: 128 GSSVVNALSTQLDVHVYKNGQVYFQEYKRGEVVADLEVVGET-DRSGTTVHFTPDPEIFT 186

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   FD A+L K  Q  A+L+  +    +  +E  E+        +++ GG+ +Y++   
Sbjct: 187 ETTEFDFAKLNKRIQELAFLNRGLNLSITDKREGVEQTKE-----YHYEGGIASYVEYLN 241

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           EN+ +I       + E       TVE A+ +       + S+ N I T EGGTHE G R 
Sbjct: 242 ENKDVIFETPIYTEGEMDDI---TVEVAMQYTTSYHENVVSFANNIHTHEGGTHEQGFRT 298

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA+  +   +   ++  +D+      ++SV    P+F GQTKTKL + +  +
Sbjct: 299 ALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPGPQFEGQTKTKLGNSEVVK 358

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
                  D F  +L++NP  A +++E  I  S+ R+  ++ RE   +K+ +    LPGKL
Sbjct: 359 ITNRLFSDAFAEFLLENPQIARRIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS N A  TELFIVEGDSAGGSAK  R+R  QA+LP+RGKILNV  A  +KI  N++I
Sbjct: 419 ADCSSNDAAKTELFIVEGDSAGGSAKSGRDREFQAILPIRGKILNVEKASMDKILANEEI 478

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             L  A+G    + +     RY+K++IMTDADVDGAHI +LLLT FY+ M  ++E  +++
Sbjct: 479 RSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGYVY 538

Query: 574 LISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           +  PP++ I  G++   Y       E+  Q  LE     G+ K  I R+KGLGEM   QL
Sbjct: 539 IAQPPIYGIKVGSEIKEYIQPGVNQEQELQDALER-HSTGRSKPTIQRYKGLGEMDDHQL 597

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET M+   R + RV ++       +     + LMG K + R +FI+E A +
Sbjct: 598 WETTMNPENRLMARVSVDD----AAEADKIFDMLMGDKVEPRREFIEENAVY 645


>gi|116511808|ref|YP_809024.1| DNA topoisomerase IV subunit B [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116107462|gb|ABJ72602.1| DNA topoisomerase IV subunit B [Lactococcus lactis subsp. cremoris
           SK11]
          Length = 644

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 247/653 (37%), Positives = 365/653 (55%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NYD S+I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ N I V++
Sbjct: 6   NNYDDSAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGNKITVTI 65

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G L+V D GRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 66  NADGSLSVEDEGRGMPVGKH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 123

Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R  T++ Q+F  G  P + LEK  K  ++K GT++TF PD  IF   
Sbjct: 124 VNALSTWLEVEITRDGTVYRQRFENGGHPATTLEKIGKAPKSKTGTKVTFMPDSTIFSTT 183

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V       +         EKEEF++  G++ ++    E+
Sbjct: 184 -EFKYNIISERLNESAFLLKEVTISLEDKR-------TDEKEEFHYENGVQDFVAYLNED 235

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  ++  +   + ++ G     VE A+ + +     I S+ N + T +GGTHE+GL+ A+
Sbjct: 236 KDSLTPVL-YFEGKQDG---FEVEVALQYNDGYSENILSFVNNVRTKDGGTHEAGLKTAI 291

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ + +YA        +  ++   D       +LSV I     +F GQTK KL S  A+ 
Sbjct: 292 TKAMNEYARKVNLLKDKDKNLEGSDYREGLTAVLSVLIPEEHLQFEGQTKDKLGSPLARP 351

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451
            V++ + +    YL++N   A  L+   I+  E R   RK RE +R     K       G
Sbjct: 352 VVDSLVSEKLSFYLMENGELAQNLIRKAIKAREAREAARKAREDSRNGKKSKKDKGLLSG 411

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL        +  EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I  N+
Sbjct: 412 KLTPAQTKNPNKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNE 471

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +   D  Y+KVIIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 472 EINTMIYTIGAGVGADFTLADRNYDKVIIMTDADTDGAHIQTLLLTFFYRYMKPLVEAGH 531

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     K  YA  +    ++ ++F K+      + R+KGLGEM A Q
Sbjct: 532 VYIALPPLYKMSEGKGKKEKIEYAWTDGELAELRKQFGKNA----NLQRYKGLGEMNADQ 587

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET MD   RTL++V I+         +  ++ LMG K + R K+I+    F
Sbjct: 588 LWETTMDPETRTLIQVTIDD----AAQAEKRVSVLMGDKVEPRRKWIENNVKF 636


>gi|257051220|ref|YP_003129053.1| DNA gyrase, B subunit [Halorhabdus utahensis DSM 12940]
 gi|256689983|gb|ACV10320.1| DNA gyrase, B subunit [Halorhabdus utahensis DSM 12940]
          Length = 637

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 252/650 (38%), Positives = 373/650 (57%), Gaps = 24/650 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + Y A  I++LEGL+ V+ RP MYIG TD + LHHL  EV+DNA+DE +AG+ + IEV++
Sbjct: 5   NAYGAGQIQVLEGLQAVQKRPAMYIGSTDTRGLHHLVYEVVDNAIDEALAGHCDHIEVTI 64

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G ++V D+GRGIP++ H ++ ++  +E+I+T LHAGGKFDN +Y++SGGLHGVG+SV
Sbjct: 65  HDDGSVSVTDDGRGIPIDIHEEY-DRPAVEVIMTVLHAGGKFDNKSYQVSGGLHGVGVSV 123

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDPKIFGDK 219
           VNALS +L V V+R+  ++ Q F  G P   L +       ++ GT I F PD +IF   
Sbjct: 124 VNALSQKLEVEVSREGNVWKQTFDHGAPADDLTEIRSLDDPDETGTTIRFWPDEEIFET- 182

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  + L    +  A+L+  V+   + D+E          E F + GG++ +++   E 
Sbjct: 183 TDFQFSTLANRLRELAFLNSGVEITLADDRE-------ERAETFQYEGGIREFVEYLNET 235

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIA-WCEENPEITSYCNTILTDEGGTHESGLRVAL 338
           +  +  E+   + E +      VE A+    E    I ++ N I T EGG+H +G + AL
Sbjct: 236 KDPLHDEVVYFEDEDQDIQ---VEVALQATTELQGSIHAFANNINTREGGSHLTGFKTAL 292

Query: 339 TRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  YA        I      +D+      ++S+   +P+F GQTKTKL + + +  V
Sbjct: 293 TRVVNDYATTNDLLSDIEETLKGEDIREGLTAVISIKHPDPQFEGQTKTKLGNSEVRGVV 352

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
           E+A+ +    Y  +NP  A  ++   +E ++ R   +K  E   RK+A+    LPGKLAD
Sbjct: 353 ESAMHENLGTYFEENPAVAQAIVRKAVEAAKARKAAQKAEELTRRKSALESTALPGKLAD 412

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C        ELFI EGDSAGGSAKQARN   QAVLP+RGKILNV     ++I  N+QI +
Sbjct: 413 CQTKDPSRAELFIAEGDSAGGSAKQARNPDFQAVLPIRGKILNVEKHRLDRILENEQIRN 472

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ ALG     ++  ++LRYEK+I  TDADVDGAHI +LLLTFFY+ M  L+E  H++  
Sbjct: 473 IITALGTGVGDEFDLDELRYEKIIFATDADVDGAHIRTLLLTFFYRHMRPLLEGGHVYAA 532

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+RI    ++  A  +  + +I+EE  K      +I RFKGLGEM   QL +T M+ 
Sbjct: 533 RPPLYRIRYRGETYDAMTDAERDEIIEE--KCNGNPTQIQRFKGLGEMNPQQLWDTTMNP 590

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             R L R+ I+             + LMG   + R +FI+E +   + V 
Sbjct: 591 ENRFLKRITIDD----AAAADKMFSVLMGDAVEPRKQFIKEHSPEAEWVD 636


>gi|327469614|gb|EGF15083.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           sanguinis SK330]
          Length = 649

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 257/658 (39%), Positives = 378/658 (57%), Gaps = 24/658 (3%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +        +  YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +A
Sbjct: 2   TEEKQQDIQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+A+ I+V ++ +  +TVVDNGRGIPV+   K   +  +E + T LHAGGKF    Y++S
Sbjct: 62  GFASHIQVFIEKDNSITVVDNGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVS 120

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG SVVNALS +L V V +   I  Q++ RG  ++ LE   +  ++ GT + F P
Sbjct: 121 GGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEYRRGHVVADLEIIGET-DRTGTTVHFTP 179

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           DP+IF +   FD  +L K  Q  A+L+  ++   +  ++  E     + +++++ GG+ +
Sbjct: 180 DPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKRDGME-----QVKDYHYEGGIVS 234

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           Y+Q   EN+ +I         E       TVE A+ +       + S+ N I T EGGTH
Sbjct: 235 YVQYINENKDVIFETPIYTDGEMDDI---TVEVAMQYTTGYHETVMSFANNIHTHEGGTH 291

Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           E G R ALTR I  YA+  +  +    ++  +D+      ++SV    P+F GQTKTKL 
Sbjct: 292 EQGFRTALTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLG 351

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447
           + +  +       + F  +L++NP  A K++E  I  S+ R+  ++ RE   +K+ +   
Sbjct: 352 NSEVVKITNRLFSEAFSDFLLENPAVARKIVEKGILASKARIAAKRAREVTRKKSGLEIS 411

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADCS N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI
Sbjct: 412 NLPGKLADCSSNDPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKI 471

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N++I  L  A+G    + +     RY+K++IMTDADVDGAHI +LLLT  Y+ M  ++
Sbjct: 472 LANEEIRSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVL 531

Query: 568 EQKHLFLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGE 622
           E   +++  PP++ +  G+    Y       EE  Q  L  +   G+ K  I R+KGLGE
Sbjct: 532 EAGFVYIAQPPIYGVKVGSDVKEYIQPGANQEEELQAALARYS-EGRSKPTIQRYKGLGE 590

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           M   QL ET M+   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 591 MDDHQLWETTMNPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 644


>gi|94497614|ref|ZP_01304183.1| DNA topoisomerase IV, B subunit [Sphingomonas sp. SKA58]
 gi|94423031|gb|EAT08063.1| DNA topoisomerase IV, B subunit [Sphingomonas sp. SKA58]
          Length = 658

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 351/657 (53%), Positives = 461/657 (70%), Gaps = 10/657 (1%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            A+   S +YDAS+I +LEGLEPVR RPGMYIGGTDE+ALHHL SEV+DN+MDE +AG+A
Sbjct: 7   AASPVPSTDYDASTIEVLEGLEPVRRRPGMYIGGTDERALHHLASEVLDNSMDEAVAGHA 66

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             IEV+L+    LT+ DNGRGIPV+ HPKFPN+S LE+ILTTLH+GGKF+   Y  SGGL
Sbjct: 67  TRIEVTLEPGNRLTITDNGRGIPVDPHPKFPNQSALEVILTTLHSGGKFEGKAYATSGGL 126

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVGISVVNALS    V VAR   +F Q FS+G+P  PLEK     N+RGT + F PD  
Sbjct: 127 HGVGISVVNALSTSTVVEVARNKELFRQSFSQGLPQGPLEKVGGAPNRRGTSVAFTPDTA 186

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IFG+   F  ARL ++ +SKAYL   V+  W C  E+      PE   F FPGGL  +L+
Sbjct: 187 IFGE-QKFKPARLYRLARSKAYLFAGVEIRWKCAPELISDDTPPEAV-FQFPGGLADHLK 244

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESG 333
            ++ +R   +S  F+G  +  G   G VEWA+AW    +   + YCNTI T +GGTHE+G
Sbjct: 245 EQVGDRECATSVFFSGNQDFPGDA-GRVEWAVAWPLWSDGSYSWYCNTIPTPDGGTHEAG 303

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
           LR AL +GI+ + +L   K+A  I +DD+M S+  +LSVFIR+P+F  QTK +L S DA 
Sbjct: 304 LRAALVKGIRAFGDLVGQKKAKDITADDIMTSSEIMLSVFIRDPQFQSQTKDRLTSPDAA 363

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLPG 451
           R VENA+RD FDHYL  +      LL +V++R +ERLRR++++EV RKTA   RKLRLPG
Sbjct: 364 RLVENAVRDHFDHYLTDHMDRGKALLAYVLDRMDERLRRKQEKEVKRKTATNSRKLRLPG 423

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL DCS +   G E+F+VEGDSAGGSAKQAR+R  QA+LPLRGKILNVASA + KI  NQ
Sbjct: 424 KLTDCSNDDPEGAEIFLVEGDSAGGSAKQARDRKTQAILPLRGKILNVASANTAKIFANQ 483

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I D++ ALGC  R     ++LRYE+V+IMTDADVDGAHIA+LL+TFF+QEM +L+ + H
Sbjct: 484 EIGDMILALGCGIRKDCNPDNLRYERVVIMTDADVDGAHIATLLMTFFFQEMPELVRRGH 543

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           L+L  PPL+R+T G KS+YA D+ H++++L   K+    K+++SRFKGLGEM   QL+ET
Sbjct: 544 LYLAQPPLYRLTAGGKSLYAKDDAHREQLLA--KEFKGKKVDVSRFKGLGEMNPMQLRET 601

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD--VGT 686
            MD   R+L+R+ +  D+   +  +D +++LMGT    RF FIQE A+ +D+  +  
Sbjct: 602 TMDPKTRSLIRITLPDDVEDRQQVRDLVDRLMGTNPAHRFAFIQENAAAVDEEAIDA 658


>gi|223934277|ref|ZP_03626203.1| DNA gyrase, B subunit [Streptococcus suis 89/1591]
 gi|330833155|ref|YP_004401980.1| DNA gyrase subunit B [Streptococcus suis ST3]
 gi|223897052|gb|EEF63487.1| DNA gyrase, B subunit [Streptococcus suis 89/1591]
 gi|329307378|gb|AEB81794.1| DNA gyrase subunit B [Streptococcus suis ST3]
          Length = 650

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 262/652 (40%), Positives = 382/652 (58%), Gaps = 24/652 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           Q  +  YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I
Sbjct: 9   QEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFADKI 68

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           EV ++ +  +TV+DNGRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGV
Sbjct: 69  EVYIEPDNSITVIDNGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS +L V V +   ++ Q++ RG  ++ LE   +  ++ GT + F PDP+IF 
Sbjct: 128 GSSVVNALSTQLDVHVYKNGQVYFQEYKRGEVVADLEVVGET-DRSGTTVHFTPDPEIFT 186

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   FD A+L K  Q  A+L+  +    +  +E  E+        +++ GG+ +Y++   
Sbjct: 187 ETTEFDFAKLNKRIQELAFLNRGLNLSITDKREGVEQTKE-----YHYEGGIASYVEYLN 241

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRV 336
           EN+ +I       + E       TVE A+ +     E   S+ N I T EGGTHE G R 
Sbjct: 242 ENKDVIFETPIYTEGEMDDI---TVEVAMQYTTSYHENVVSFANNIHTHEGGTHEQGFRT 298

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA+  +   +   ++  +D+      ++SV    P+F GQTKTKL + +  +
Sbjct: 299 ALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPGPQFEGQTKTKLGNSEVVK 358

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
                  D F  +L++NP  A +++E  I  S+ R+  ++ RE   +K+ +    LPGKL
Sbjct: 359 ITNRLFSDAFAEFLLENPQIARRIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS N A  TELFIVEGDSAGGSAK  R+R  QA+LP+RGKILNV  A  +KI  N++I
Sbjct: 419 ADCSSNDATKTELFIVEGDSAGGSAKSGRDREFQAILPIRGKILNVEKASMDKILANEEI 478

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             L  A+G    + +     RY+K++IMTDADVDGAHI +LLLT FY+ M  ++E  +++
Sbjct: 479 RSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGYVY 538

Query: 574 LISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           +  PP++ I  G++   Y       E+  Q  LE     G+ K  I R+KGLGEM   QL
Sbjct: 539 IAQPPIYGIKVGSEIKEYIQPGVNQEQELQDALER-HSTGRSKPTIQRYKGLGEMDDHQL 597

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET M+   R + RV ++       +     + LMG K + R +FI+E A +
Sbjct: 598 WETTMNPENRLMARVSVDD----AAEADKIFDMLMGDKVEPRREFIEENAVY 645


>gi|294508443|ref|YP_003572501.1| DNA gyrase subunit B [Salinibacter ruber M8]
 gi|294344771|emb|CBH25549.1| DNA gyrase subunit B [Salinibacter ruber M8]
          Length = 698

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 262/654 (40%), Positives = 375/654 (57%), Gaps = 23/654 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y AS+I++LEGLE VR RP MYIG    + LHHL  EV+DN++DE +AG+ + I V +
Sbjct: 59  SDYAASNIQVLEGLEAVRKRPSMYIGDVGLRGLHHLVYEVLDNSIDEAMAGHCDEIGVEI 118

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G +++ DNGRGIPV+ HP   ++S LE+++T LHAGGKFD  +Y++SGGLHGVG+SV
Sbjct: 119 YEDGSVSIEDNGRGIPVDQHP-AEDRSALEVVMTVLHAGGKFDKDSYQVSGGLHGVGVSV 177

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLE--KKEKVRNKRGTRITFRPDPKIFGDK 219
           VNAL+    VTV R  +++ Q +  G+P  P+   +  +   + GTRI F PD  IF   
Sbjct: 178 VNALASRFEVTVWRDGSVWEQNYLCGVPEDPVRRVRPMEAGEETGTRIRFWPDGDIFKT- 236

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L    +  A+L+  V+      +E  E      +E ++   G+  ++    E 
Sbjct: 237 TEFRFETLSDRLRELAFLNAGVRIRVEDHREEDEGLA---RETYHSEEGIIGFVDYLDEA 293

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           R  I  E      E  G     VE A+ + +E  +   S+ N I T EGGTH +G R AL
Sbjct: 294 RDSILDETIYI-AETDG--EVPVELAMQYNDEYNKNVLSFVNNINTHEGGTHVTGFRRAL 350

Query: 339 TRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +K+YA+       +      DD       +LSV + EP+F GQTKTKL + D Q  V
Sbjct: 351 TRTLKRYAQKNDMLSDLKFDLSGDDFREGLTAVLSVKVSEPQFEGQTKTKLGNSDVQGIV 410

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
           E+ +      +L  +P +A +++E VI+ +E R   RK RE V RK A     LPGKLAD
Sbjct: 411 ESLINTELGRWLEDHPDQAERIIEKVIQAAEARAAARKARELVQRKDAFSGGSLPGKLAD 470

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS       EL++VEGDSAGGSAKQAR+R  QA+LPLRGKILNV  A  ++I  + QI +
Sbjct: 471 CSSRDPEEGELYLVEGDSAGGSAKQARDRHFQAILPLRGKILNVEKARLDRILEHDQIQN 530

Query: 516 LVQALG---CRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           +V ALG     T  ++   ++RY K+++MTDADVDGAHI SLLLTFFY+++  LIE+ ++
Sbjct: 531 IVTALGTGLTSTEEEFNMNEMRYHKIVMMTDADVDGAHIRSLLLTFFYRQLRPLIEKGNI 590

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL+RI  G++ +Y   +E  Q  + E +  G     + R+KGLGEM   QL  T 
Sbjct: 591 YIALPPLYRIQNGSQEIYCWSDEEMQTRMAELRADGNS-PSMQRYKGLGEMNPEQLWTTT 649

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           M+   R + +V I              + LMG   + R +FI+  A +   +  
Sbjct: 650 MNPETRKIQQVTIQD----AAAADRLFSTLMGDSVEPRREFIERNAKYAT-IDA 698


>gi|289579993|ref|YP_003478459.1| DNA gyrase subunit beta [Natrialba magadii ATCC 43099]
 gi|289529546|gb|ADD03897.1| DNA gyrase, B subunit [Natrialba magadii ATCC 43099]
          Length = 643

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 248/653 (37%), Positives = 367/653 (56%), Gaps = 18/653 (2%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           S    Y A  I++LEGLE VR RP MYIG TD + LHHL  EV+DN++DE +AG+ + I 
Sbjct: 2   SQESEYGAGQIQVLEGLEAVRKRPAMYIGSTDSRGLHHLVYEVVDNSIDEALAGHCDEIT 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           VS++ +  ++V D+GRGIPV+ H ++ ++  LE+ILT LHAGGKFDN +Y++SGGLHGVG
Sbjct: 62  VSINEDDSISVADDGRGIPVDTHEEY-DRPALEVILTVLHAGGKFDNKSYQVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE--KKEKVRNKRGTRITFRPDPKIF 216
           +SVVNALS  L  TV R   ++   F  G P+  +E  +  +   + GT I F PD  IF
Sbjct: 121 VSVVNALSSRLETTVKRDGGVYEHAFEIGEPIGDMERVRDMEPDEETGTEIQFWPDDDIF 180

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                   + L    +  A+L+  V+     ++E  E       E + + GG++ +++  
Sbjct: 181 ET-TDMSFSTLSNRLRELAFLNSGVRITLRDERERTEDG-EAVAETYEYEGGIREFVEYL 238

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIA-WCEENPEITSYCNTILTDEGGTHESGLR 335
            E RS +  +I   + E +      VE A+    E    I ++ N I T EGGTH +G +
Sbjct: 239 NETRSAMHEDIIYFEDEDQNV---RVEVAMQATQELQGSIHAFANNINTREGGTHLTGFK 295

Query: 336 VALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR +  Y         I  ++  +D+      ++SV   +P+F GQTKTKL + + +
Sbjct: 296 TALTRVVNDYGNENNLLSDIEENLKGEDIREGLTAVVSVKHPDPQFEGQTKTKLGNSEVR 355

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
             VE A+ D    Y  ++P  A  ++   +E ++ R   +K  E   RK+A+    LPGK
Sbjct: 356 GIVEGAMHDCLGTYFEEHPDTAQAIVMKAVEAAKARKAAQKAEELTRRKSALESTSLPGK 415

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC        ELFI EGDSAGGSAKQARN   QAVLP++GKILNV     ++I  N +
Sbjct: 416 LADCQTKDPEEAELFIAEGDSAGGSAKQARNPEFQAVLPIKGKILNVEKHRLDRILENDE 475

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I +++ A+G     ++  ED+RY+K+I+ TDADVDGAHI +L+LTFFY+ M  L+E  ++
Sbjct: 476 IRNMITAIGAGIGDEFDVEDVRYKKIIMATDADVDGAHIRTLMLTFFYRHMRPLLEGGYV 535

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           +   PPL+RI    ++  A  +  + +I+EE         ++ RFKGLGEM   QL ET 
Sbjct: 536 YATQPPLYRIRYRGETYDAMTDVERDEIVEEKCDGNPS--QVQRFKGLGEMNPEQLWETT 593

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           M+   R L ++ +              + LMG   + R +FI+E A   + + 
Sbjct: 594 MNPENRILKQITVED----AAAADKMFSVLMGDAVEPRKQFIKENAPEAEWID 642


>gi|187934052|ref|YP_001884271.1| DNA gyrase subunit B [Clostridium botulinum B str. Eklund 17B]
 gi|187722205|gb|ACD23426.1| DNA gyrase, B subunit [Clostridium botulinum B str. Eklund 17B]
          Length = 635

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 256/651 (39%), Positives = 380/651 (58%), Gaps = 21/651 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +  +  YD + I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AGY   I
Sbjct: 2   EQNNQKYDENQIQVLEGLEAVRKRPGMYIGSTSARGLHHLVYEIVDNSIDEALAGYCKNI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           EV ++ +  +T  D+GRG+PV  HPK    S +E+I+T LHAGGKF    Y++SGGLHGV
Sbjct: 62  EVKINKDNSITSSDDGRGMPVGMHPKMHK-SAVEVIMTILHAGGKFGGGGYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS++  VTV R+  I+ Q++S+G  L  L++        GT I F+PD +IF 
Sbjct: 121 GASVVNALSEQCIVTVKREGHIWKQEYSKGKVLYDLKQIGNTEE-SGTTIYFKPDAEIFD 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   FD   L +  +  A+L+  +       +   E       E +Y+ GG+K+++    
Sbjct: 180 EVL-FDFDTLSQRLRELAFLNKGINIKLIDSRNDRE-------ENYYYEGGIKSFVSYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRV 336
            N++ +  E    +  K      TVE  + + +   E    + N I T EGGTH  G + 
Sbjct: 232 RNKTPLHPEPIYVEGIKDKV---TVELGLQYNDGYTENLFSFANNIDTIEGGTHLVGFKT 288

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR    YA+      +   +   DD+      ++SV I +P+F GQTKTKL + + + 
Sbjct: 289 ALTRAFNDYAKRFGFIKENDKNFSGDDIREGLTAVISVKIEDPQFEGQTKTKLGNSEVKG 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454
            V++ + +    +L +NP  +  +++  +  +  R   RK RE+ RK+ + +  LPGKLA
Sbjct: 349 IVDSIVSEYIGIFLEENPGISKIIIDKALMAARAREAARKARELTRKSVLERTTLPGKLA 408

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS       E++IVEGDSAGGSAKQ R+R  QA+LPLRGKI+NV     +KI N++ I 
Sbjct: 409 DCSSKDPRECEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKIMNVEKQRLDKILNSETIR 468

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            +V A G      +  E +RY ++IIMTDADVDGAHI +LLLTFFY+ M +L+EQ H+++
Sbjct: 469 SMVTAFGGGIGKDFDIEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMRELVEQGHVYI 528

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPLFR+ +G K VYA+ +    ++L +        ++I R+KGLGEM A+QL +T MD
Sbjct: 529 AQPPLFRVGKGKKEVYAYSDSELDQVLLDMGGKDTS-VDIQRYKGLGEMNATQLWDTTMD 587

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             KR LL+ EI   +       +    LMG K + R +FI++ A  + ++ 
Sbjct: 588 PAKRILLKAEIEDAM----AADEIFTILMGEKVEPRREFIEQNAKNVVNLD 634


>gi|91976956|ref|YP_569615.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris BisB5]
 gi|91683412|gb|ABE39714.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris BisB5]
          Length = 684

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 387/683 (56%), Positives = 497/683 (72%), Gaps = 9/683 (1%)

Query: 8   LFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIG 67
           L  +   +S G           P   A     A   Y A+ I +LEGLEPVR RPGMYIG
Sbjct: 5   LKPSSKSKSAGDLFGAAPKSAAPRPAAKPTGGAEAGYTAADIEVLEGLEPVRRRPGMYIG 64

Query: 68  GTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNK 127
           GTDEKALHHLF+EVIDN+MDE +AG+A  IEV L  +GFLTV DNGRGIPV+ HPKFP K
Sbjct: 65  GTDEKALHHLFAEVIDNSMDEALAGHATFIEVELTTDGFLTVSDNGRGIPVDPHPKFPKK 124

Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187
           S LE+I+ TLHAGGKFD+  YE SGGLHGVG+SVVNALS  L V VAR   ++   F+RG
Sbjct: 125 SALEVIMCTLHAGGKFDSKVYETSGGLHGVGVSVVNALSSLLEVEVARGQQLYRMVFARG 184

Query: 188 IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247
           IP   LE   K+ N+RGTR+ F+PD  IFG KA F   RL KM +SKAYL G V+  W C
Sbjct: 185 IPQGKLESLGKINNRRGTRVRFKPDADIFGAKAAFKPQRLFKMARSKAYLFGGVEIRWKC 244

Query: 248 DKEIAEK-YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
           D E+ +    +P ++ F+FPGGLK YL   +   +L+  +IF+GK+ + G H G  EWA+
Sbjct: 245 DPELLKGLEDVPAEDTFHFPGGLKDYLGAAIHADTLVHPDIFSGKSGRNGAH-GACEWAV 303

Query: 307 AWC-EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMI 364
           AW  + +  ++SYCNT+ T +GGTHESG+R AL RG+K +AE     KRA SI S+D+M+
Sbjct: 304 AWTADADGFLSSYCNTVPTPDGGTHESGMRSALLRGLKDHAERVGQGKRASSITSEDVMV 363

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            A  +LSVF+REPEF GQTK +L + +AQR VE A++DPFDH+L  NP++A KLL++V+E
Sbjct: 364 GAAVMLSVFVREPEFQGQTKDRLATAEAQRIVEQAIKDPFDHWLSGNPVQANKLLDFVVE 423

Query: 425 RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           R+EERLRRR+++E++RKTA++KLRLPGKLADC+   A G+ELFIVEGDSAGGSAKQAR+R
Sbjct: 424 RAEERLRRRQEKEISRKTAVKKLRLPGKLADCTNTAAEGSELFIVEGDSAGGSAKQARDR 483

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QAVLPLRGKILNVASA  +K+  N Q+ DL+QA+GC T   YREEDLRY ++IIMTDA
Sbjct: 484 KTQAVLPLRGKILNVASATKDKVVANAQLSDLMQAIGCGTGVNYREEDLRYARIIIMTDA 543

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           DVDGAHIASLL+TFFY++M  LI++ HL+L  PPL+R+T G K+VYA D+ HK ++L++ 
Sbjct: 544 DVDGAHIASLLITFFYRQMPKLIDEGHLYLAVPPLYRLTHGAKTVYARDDAHKAELLKK- 602

Query: 605 KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMG 664
           + +   K+++ RFKGLGEM+ +QLKET MD  KRTLLRV +  D    + T DS+ +LMG
Sbjct: 603 EFNANAKVDVGRFKGLGEMMPAQLKETTMDPAKRTLLRVVLLPD--DREGTADSVERLMG 660

Query: 665 TKADERFKFIQERASFIDD--VG 685
           TKA+ RF FI ++A F  +  + 
Sbjct: 661 TKAEARFAFISDKAEFASEDLLD 683


>gi|294499300|ref|YP_003563000.1| DNA topoisomerase IV subunit B [Bacillus megaterium QM B1551]
 gi|294349237|gb|ADE69566.1| DNA topoisomerase IV, subunit B [Bacillus megaterium QM B1551]
          Length = 658

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 243/651 (37%), Positives = 361/651 (55%), Gaps = 36/651 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY+  +I++LEGL+ VR RPGMYIG TD + LHHL  E++DN++DE +AGY   I V++ 
Sbjct: 8   NYNEDAIQVLEGLDAVRKRPGMYIGSTDTRGLHHLVYEIVDNSVDEALAGYGEEIIVTIH 67

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V D GRG+P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 68  KDNSISVQDKGRGMPTGMHK--LGKPTPEVILTILHAGGKFGQGGYKTSGGLHGVGASVV 125

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L VT+ R   I+ Q+F  G  P++ LEK  K +   GT I F+PD  IF     
Sbjct: 126 NALSEWLTVTIHRDGFIYEQRFENGGKPVTTLEKIGKTKK-TGTTIHFKPDATIFSTTV- 183

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L +  +  A+L    K      +           + F++  G++ ++    E + 
Sbjct: 184 YNYDTLCERLRESAFLLKGFKIELIDKRH-------DRHDIFHYETGIQAFVSYLNEEKD 236

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            +   +F         H   VE+A  + +     I S+ N + T +GGTHESG + A+TR
Sbjct: 237 SLHPVVFFEGIH----HNIEVEFAFQFNDGYSETILSFVNNVRTKDGGTHESGAKSAMTR 292

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA       ++  ++   D+      I+SV I E   +F GQTK KL + +A+ +V
Sbjct: 293 AFNEYARKVSLLKEKDKNLEGTDIREGLGAIVSVRIPEELLQFEGQTKGKLGTSEARSSV 352

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKL 453
           +  + +   ++L +NP  ++ L++  I+ ++ R   RK RE  R    RK     L GKL
Sbjct: 353 DAVISEKLAYFLEENPDVSSLLVKKAIKAAQAREAARKAREDARNGKKRKRQETVLSGKL 412

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A  + I  N++I
Sbjct: 413 TPAQSRNPQRNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLQDIFKNEEI 472

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A+G    + +  +D+ Y+K++IMTDAD DGAHI  LLLTFFY+ M  L+E   +F
Sbjct: 473 STIIHAIGGGVGADFTIDDINYDKIVIMTDADTDGAHIQVLLLTFFYRYMKPLVEAGKVF 532

Query: 574 LISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G   K V  Y+  +E  Q  +++  +       I R+KGLGEM A QL 
Sbjct: 533 IALPPLYKVSKGSGKKEVVEYSWSDEELQGAIDKVGR----GYMIQRYKGLGEMNADQLW 588

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV I+            +  LMG K + R K+I+   +F
Sbjct: 589 ETTMNPETRTLIRVRIDD----AARADRRVTTLMGDKVEPRRKWIESNVAF 635


>gi|296531195|dbj|BAJ08046.1| DNA gyrase subunit B [Streptococcus intermedius]
          Length = 648

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 259/654 (39%), Positives = 382/654 (58%), Gaps = 24/654 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
             +  + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A 
Sbjct: 5   TKEMQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFAT 64

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I+V ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLH
Sbjct: 65  HIQVFIEKDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTILHAGGKFGGGGYKVSGGLH 123

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS +L V V +   I  Q++ RG  ++ L+   +  ++ GT + F PDP+I
Sbjct: 124 GVGSSVVNALSTQLDVRVYKNGQIHFQEYRRGQVVADLKIIGET-DRTGTTVHFTPDPEI 182

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   FD  +L K  Q  A+L+  ++   +  +E  E     + +++++ GG+ +Y+Q 
Sbjct: 183 FTETVEFDFEKLNKRVQELAFLNRGLRISITDKREGLE-----QTKDYHYEGGIASYVQY 237

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             EN+ +I         E       TVE AI +       + S+ N I T EGGTHE G 
Sbjct: 238 INENKDVIFENPIYTDGEMDDI---TVEVAIQYTTGYHETVMSFANNIHTHEGGTHEQGF 294

Query: 335 RVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR I  YA+  +  +    ++  +D+      ++SV    P+F GQTKTKL + + 
Sbjct: 295 RTALTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEV 354

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
            +       + F  +L++NP  A K++E  I  S+ R+  ++ RE   +K+ +    LPG
Sbjct: 355 VKITNRLFSEAFSDFLLENPAVAKKIIEKGILASKARIAAKRAREVTRKKSGLEISNLPG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS N  H TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N+
Sbjct: 415 KLADCSSNDPHETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  L  A+G    + +     RY+K++IMTDADVDGAHI +LLLT  Y+ M  ++E  +
Sbjct: 475 EIRSLFTAMGTGFGADFDVNKTRYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGY 534

Query: 572 LFLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           +++  PP++ +  G++   Y       EE  Q  LE +   G+ K  I R+KGLGEM   
Sbjct: 535 VYIAQPPIYGVKVGSEVKEYIQPGVNQEEELQLALERYS-EGRSKPSIQRYKGLGEMDDH 593

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET M+   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 594 QLWETTMNPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643


>gi|302864517|ref|YP_003833154.1| DNA gyrase subunit B [Micromonospora aurantiaca ATCC 27029]
 gi|315500827|ref|YP_004079714.1| DNA gyrase, b subunit [Micromonospora sp. L5]
 gi|302567376|gb|ADL43578.1| DNA gyrase, B subunit [Micromonospora aurantiaca ATCC 27029]
 gi|315407446|gb|ADU05563.1| DNA gyrase, B subunit [Micromonospora sp. L5]
          Length = 648

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 236/652 (36%), Positives = 358/652 (54%), Gaps = 19/652 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y A SI +LEGLE VR RPGMYIG T E+ LHHL  EV+DNA+DE +AG+ + I+V L
Sbjct: 7   KKYGAESITVLEGLEAVRKRPGMYIGSTGERGLHHLVWEVVDNAVDEALAGHCDTIDVVL 66

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G + V DNGRG PV+ HPK   K  +E+ LT LHAGGKFD   Y +SGGLHGVG+SV
Sbjct: 67  LADGGVRVTDNGRGFPVDLHPKL-KKPGVEVALTVLHAGGKFDGKAYAVSGGLHGVGVSV 125

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  + V + +   ++ Q++    P    +   +  ++ G+ ++F PDP +F     
Sbjct: 126 VNALSTRMAVEIHKDGFVWRQQYHHSKPTPLEK--GEATDRTGSAVSFWPDPDVFET-VD 182

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   + +  Q  A+L+  +      ++   ++ G   +  F++ GG+  +++    ++S
Sbjct: 183 FDFHTIYRRLQEMAFLTRGLTIHLLDERVPEDEDGKTREVTFHYEGGIADFVRHLNASKS 242

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I   +     E+ G    +VE A+ W E     + ++ N I T EGGTHE G R ALT 
Sbjct: 243 PIHKTVVEFGAEETG---MSVEIAMQWNESYGESVYTFANNINTHEGGTHEEGFRAALTS 299

Query: 341 GIKKYAELTQNKRAISI-ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
            + +Y    +  +       +D+      I+SV + +P+F GQTKTKL +   +  V+  
Sbjct: 300 VVNRYGAEKKLLKGDERLSGEDIREGLAAIISVKLTDPQFEGQTKTKLGNTPVKGFVQRV 359

Query: 400 LRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
             +    +  +NP EA  +++            ++ ++   RK+ +    +PGKLADC  
Sbjct: 360 CNESLVDWFDRNPAEAKIIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQS 419

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ 
Sbjct: 420 TDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALIT 479

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG      +  E LRY K+++M DADVDG HI +LLLT  ++ M  L+E  H++L +PP
Sbjct: 480 ALGTGIHDDFDIEKLRYHKIVLMADADVDGQHIQTLLLTLLFRFMRPLVELGHVYLAAPP 539

Query: 579 LFRITQGTK---SVYAHDEEHKQKI--LEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           L++I    K   + YA+ +  +  +  L + KK      +I RFKGLGEM   +L ET M
Sbjct: 540 LYKIKWNKKGDDAQYAYSDRERDGLIALRQQKKPNARPDDIQRFKGLGEMNYPELWETTM 599

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +   RTL +V ++          +  + LMG   + R  FIQ  A  +  + 
Sbjct: 600 NPATRTLRQVTLDD----AATADELFSVLMGEDVEARRSFIQRNAKDVRFLD 647


>gi|182678200|ref|YP_001832346.1| DNA topoisomerase IV subunit B [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182634083|gb|ACB94857.1| DNA topoisomerase IV, B subunit [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 691

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 385/687 (56%), Positives = 507/687 (73%), Gaps = 13/687 (1%)

Query: 7   DLFSTLPPQ------SQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           DLF T   +       +G+ +   K          +       Y A+SI +LEGLEPVR 
Sbjct: 6   DLFGTSARKAAPRGADKGADKSADKGTPKTPRALPSGTPGEAGYTAASIEVLEGLEPVRR 65

Query: 61  RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           RPGMYIGGTDE ALHHLF+EV+DNAMDE +AG+A  I+V+ +  GF+TV+DNGRGIPV+ 
Sbjct: 66  RPGMYIGGTDETALHHLFAEVLDNAMDEAVAGHATFIDVTCETGGFVTVIDNGRGIPVDP 125

Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
           HPKFP KS LE+I+TTLHAGGKFD+  Y+ SGGLHGVG+SVVNAL++ L V VAR   ++
Sbjct: 126 HPKFPKKSALEVIMTTLHAGGKFDSGAYQTSGGLHGVGVSVVNALAEVLEVEVARGQILY 185

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
            Q F+RG+P S L++  KV+N+RG+++ F+PDP+IFG++A    ARL KM+++KA+L   
Sbjct: 186 RQTFARGLPTSKLQEVGKVQNRRGSKVRFKPDPQIFGEQAHLKPARLFKMSRAKAFLFKG 245

Query: 241 VKTCWSCDKE-IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
           V+  W C    +     +P++   +FPGGLK YL   +E +SL++ +IF G+ EK+G H 
Sbjct: 246 VEIRWHCAPSLLPHDGSVPQEAVLHFPGGLKDYLTQDIEGKSLVTEQIFAGRIEKEGGH- 304

Query: 300 GTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISI 357
           G++EWAIAW  +++  + S+CNTI T +GGTHE+GLR AL RG+K +AE     KRA  +
Sbjct: 305 GSLEWAIAWLADDDGFVHSFCNTIPTPDGGTHEAGLRGALLRGLKDHAERIGQTKRASIL 364

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
            ++D+M+S   +LSVFIREPEF GQ K++L++ +A R VE  LRD FDH+L  +P  A K
Sbjct: 365 TNEDVMVSTAALLSVFIREPEFQGQNKSRLMTTEASRLVEGPLRDAFDHWLAASPSHAAK 424

Query: 418 LLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           LL+W +ER+EERLRRR +++V RKTA RKLRLPGKLADC+   + G+E+FIVEGDSAGGS
Sbjct: 425 LLDWSVERAEERLRRRAEKDVARKTATRKLRLPGKLADCTNTASQGSEIFIVEGDSAGGS 484

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AKQAR+R+NQAVLPLRGKILNVASA  +K+  NQQ+ DL+QALGC T S YR +DLRYEK
Sbjct: 485 AKQARDRANQAVLPLRGKILNVASATRDKLTANQQLADLIQALGCGTGSHYRHDDLRYEK 544

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           +IIMTDADVDGAHIASLL+TFFY++M  L+E  HL+L  PPL+R+TQG+K VYA +E H+
Sbjct: 545 IIIMTDADVDGAHIASLLITFFYRQMPKLVEGGHLYLAVPPLYRLTQGSKQVYARNEAHR 604

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
             I+++ +  GKGKIEISRFKGLGEM+ASQLKET MD  KR LLRV +       ++T D
Sbjct: 605 DAIIKK-ELTGKGKIEISRFKGLGEMMASQLKETTMDPAKRNLLRVVV--LAEDREETSD 661

Query: 658 SINKLMGTKADERFKFIQERASFIDDV 684
           S+ +LMG + + RF FIQE A+F  D+
Sbjct: 662 SVERLMGNRPEARFAFIQEHAAFAGDL 688


>gi|228998349|ref|ZP_04157941.1| DNA topoisomerase 4 subunit B [Bacillus mycoides Rock3-17]
 gi|229005832|ref|ZP_04163527.1| DNA topoisomerase 4 subunit B [Bacillus mycoides Rock1-4]
 gi|228755412|gb|EEM04762.1| DNA topoisomerase 4 subunit B [Bacillus mycoides Rock1-4]
 gi|228761394|gb|EEM10348.1| DNA topoisomerase 4 subunit B [Bacillus mycoides Rock3-17]
          Length = 654

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 242/651 (37%), Positives = 361/651 (55%), Gaps = 36/651 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AG+ + I V + 
Sbjct: 7   QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V+D GRG+P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 67  KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L VT+ R   I+ Q+F  G +P + LEK  K + + GT + F+PDP IF     
Sbjct: 125 NALSEWLVVTIKRDGYIYEQRFENGGVPATTLEKIGKTK-QSGTTMHFKPDPSIFSTTN- 182

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L +  +  A+L   +K     ++   E       + F++  G++ ++    E + 
Sbjct: 183 YNYETLCERLRESAFLLKGMKITIRDERNDLE-------DVFHYETGIEAFVSYLNEEKD 235

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I   +     E+ G      E A  + +     I S+ N + T +GGTHE+G + A+TR
Sbjct: 236 SIHPVV-YFTGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA       ++  ++   D+      I+SV + E   +F GQTK KL + + + +V
Sbjct: 292 VFNEYARKVSLLKEKDKNLEGTDIREGLAAIVSVRVPEDLLQFEGQTKGKLGTSEGRSSV 351

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKL 453
           +  + +   ++L +NP  AT L+   I+ ++ R   RK RE  R    +K     L GKL
Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKRSEGTLSGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I
Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A+G    +++  ED+ Y+KV+IMTDAD DGAHI  LLLTFFY+ M  LIE   +F
Sbjct: 472 NTIIYAIGGGVGNEFTVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G        YA  +E    + ++  K       + R+KGLGEM A QL 
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGK----GYMLQRYKGLGEMNADQLW 587

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV+I+         +  +  LMG K + R K+I+    F
Sbjct: 588 ETTMNPETRTLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIERNVQF 634


>gi|6647532|sp|Q9ZFK1|GYRB_BORHE RecName: Full=DNA gyrase subunit B
 gi|3859564|gb|AAC72846.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317666|gb|AAT99954.1| DNA gyrase subunit B [Borrelia hermsii DAH]
 gi|51317668|gb|AAT99955.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317670|gb|AAT99956.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317672|gb|AAT99957.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317674|gb|AAT99958.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317676|gb|AAT99959.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317678|gb|AAT99960.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317680|gb|AAT99961.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317682|gb|AAT99962.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317684|gb|AAT99963.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317686|gb|AAT99964.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317688|gb|AAT99965.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317690|gb|AAT99966.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317692|gb|AAT99967.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317694|gb|AAT99968.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317696|gb|AAT99969.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317698|gb|AAT99970.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317700|gb|AAT99971.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|112031373|gb|ABH88159.1| GyrB [Borrelia hermsii]
 gi|112031377|gb|ABH88161.1| GyrB [Borrelia hermsii]
          Length = 634

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 244/647 (37%), Positives = 367/647 (56%), Gaps = 19/647 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y AS+I++L+GLE VR RPGMYIG      LHHL  EV+DN++DE +AG+ + IEV ++
Sbjct: 2   SYVASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLVYEVVDNSIDEALAGFCDKIEVVIN 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV DNGRGIP + H +    S LE++LT LH+GGKF+  TY++SGGLHGVGISVV
Sbjct: 62  SDNSVTVNDNGRGIPTDVHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L V V+R   +F Q +SRGIP S ++    V + RGT++TF  D +IF     +
Sbjct: 121 NALSSFLAVIVSRDGKLFKQTYSRGIPTSEVDIIG-VSSARGTKVTFLADSEIFETL-EY 178

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L K  +  A+L+ +++      +   EK+       FYF GG+K ++     N   
Sbjct: 179 DFETLSKRLRELAFLNDKIRISIEDRRSGKEKFLE-----FYFEGGIKAFVDYITNNSKN 233

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           I +E +  +          V   + W E   +   S+ N I T EGGTH +G +    + 
Sbjct: 234 IQNEPYFIEGSCDDVI---VSVGLKWTEGYSDHILSFVNNINTREGGTHVAGFKSGFLKA 290

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + +    ++   K   S+  DD       ++S+ I EP+F GQTK KL +   ++ VE  
Sbjct: 291 MSEAFRDSKISKKDVPSLTLDDFKEGLTAVISIKIPEPQFEGQTKGKLGNSYVKKIVETI 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458
           + D     +  N +E   +L   I  +  R   RK R    +K+A   L LPGKLADC+ 
Sbjct: 351 VHDGLLKVIDDNLLEVDIILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCAS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E++IVEGDSAGGSAK  R+R +QA+LPL GK+LNV     +K+  N +++ ++ 
Sbjct: 411 KNPAEREIYIVEGDSAGGSAKMGRDRFSQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           +LG      +  E LRY K+IIM DADVDG+HI +LLLTFF++ M +LIE  H+++  PP
Sbjct: 471 SLGAGVGKTFYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIENGHVYIAMPP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+++    +  Y +D+  K+  L   +   + K+ + R+KGLGEM  +QL ET M+   R
Sbjct: 531 LYKLKYENREHYFYDDLEKEAFLGSIETGKRDKVSLQRYKGLGEMNPTQLWETTMNPATR 590

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +  ++IN  +      +     LMG   + R +FI++ A  + ++ 
Sbjct: 591 KMKLIKINDAI----QAEKIFVTLMGDDVEPRREFIEQNALDVVNLD 633


>gi|28412562|gb|AAO39047.1| coumermycin-resistant GyrB [synthetic construct]
          Length = 634

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 244/647 (37%), Positives = 368/647 (56%), Gaps = 19/647 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY AS+I++L+GLE VR RPGMYIG      LHHL  EV+DN++DE +AG+ + I+V ++
Sbjct: 2   NYVASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLVYEVVDNSIDEALAGFCDRIDVIIN 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV+DNGRGIP + H +    S LE++LT LH+GGKFD  TY++SGGLHGVGISVV
Sbjct: 62  LDNTITVIDNGRGIPTDIHEE-EGISALELVLTKLHSGGKFDKDTYKVSGGLHGVGISVV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L V V     IF Q FS+GIP S +E   +     GT++TF  D +IF     +
Sbjct: 121 NALSSFLEVYVNIDGKIFRQTFSKGIPTSKVEVVGESS-VTGTKVTFLADSEIFETL-DY 178

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L K  +  A+L+ ++       +   EK        FYF GG+K+++     +   
Sbjct: 179 NFDVLEKRLKELAFLNDKIYISIEDKRIGKEKSSK-----FYFEGGIKSFVDYLTNDSKA 233

Query: 283 ISSEIFTGKTE-KKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
             SE +              ++W  ++ +    I S+ N I T EGGTH  G R  LT+ 
Sbjct: 234 FQSEPYYIDGFINDVIVNVGLKWTESYSDN---ILSFVNNINTREGGTHVMGFRSGLTKA 290

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + +  + ++   K   ++  DD       ++SV + EP+F GQTK+KL + + ++ VE  
Sbjct: 291 MNEAFKNSKISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIRKIVEVV 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458
           + +     +  NP+E   +L   I+ +  R   RK R    +K A   L LPGKLADC+ 
Sbjct: 351 VYEHLLEIINLNPLEIDTILGKAIKAARAREAARKARESERKKNAFESLALPGKLADCTS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E++IVEGDSAGGSAK  RNR  QA+LPL GK+LNV     +K+  N +++ ++ 
Sbjct: 411 KNPLEREIYIVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           +LG      +    LRY K+IIM DADVDG+HI +LLL FF++ M DLIE  ++++  PP
Sbjct: 471 SLGAGVGKTFDITKLRYHKIIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYIYIAMPP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L++I    +  Y ++E+ K+K L+  +   +  I + R+KGLGEM  +QL ET MD  +R
Sbjct: 531 LYKIKYDNRIYYFYEEKEKEKFLDSIETKNRNSISLQRYKGLGEMNPTQLWETTMDPARR 590

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +  + I+  +    + +     LMG   + R +FI++ A  + ++ 
Sbjct: 591 KMRLMNIDDAI----EAEKIFVTLMGDLVEPRKEFIEQNALNVINLD 633


>gi|187918301|ref|YP_001883864.1| DNA gyrase subunit B [Borrelia hermsii DAH]
 gi|119861149|gb|AAX16944.1| DNA gyrase subunit B [Borrelia hermsii DAH]
          Length = 639

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 244/647 (37%), Positives = 367/647 (56%), Gaps = 19/647 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y AS+I++L+GLE VR RPGMYIG      LHHL  EV+DN++DE +AG+ + IEV ++
Sbjct: 7   SYVASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLVYEVVDNSIDEALAGFCDKIEVVIN 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV DNGRGIP + H +    S LE++LT LH+GGKF+  TY++SGGLHGVGISVV
Sbjct: 67  SDNSVTVNDNGRGIPTDVHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 125

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L V V+R   +F Q +SRGIP S ++    V + RGT++TF  D +IF     +
Sbjct: 126 NALSSFLAVIVSRDGKLFKQTYSRGIPTSEVDIIG-VSSARGTKVTFLADSEIFETL-EY 183

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L K  +  A+L+ +++      +   EK+       FYF GG+K ++     N   
Sbjct: 184 DFETLSKRLRELAFLNDKIRISIEDRRSGKEKFLE-----FYFEGGIKAFVDYITNNSKN 238

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           I +E +  +          V   + W E   +   S+ N I T EGGTH +G +    + 
Sbjct: 239 IQNEPYFIEGSCDDVI---VSVGLKWTEGYSDHILSFVNNINTREGGTHVAGFKSGFLKA 295

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + +    ++   K   S+  DD       ++S+ I EP+F GQTK KL +   ++ VE  
Sbjct: 296 MSEAFRDSKISKKDVPSLTLDDFKEGLTAVISIKIPEPQFEGQTKGKLGNSYVKKIVETI 355

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458
           + D     +  N +E   +L   I  +  R   RK R    +K+A   L LPGKLADC+ 
Sbjct: 356 VHDGLLKVIDDNLLEVDIILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCAS 415

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E++IVEGDSAGGSAK  R+R +QA+LPL GK+LNV     +K+  N +++ ++ 
Sbjct: 416 KNPAEREIYIVEGDSAGGSAKMGRDRFSQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 475

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           +LG      +  E LRY K+IIM DADVDG+HI +LLLTFF++ M +LIE  H+++  PP
Sbjct: 476 SLGAGVGKTFYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIENGHVYIAMPP 535

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+++    +  Y +D+  K+  L   +   + K+ + R+KGLGEM  +QL ET M+   R
Sbjct: 536 LYKLKYENREHYFYDDLEKEAFLGSIETGKRDKVSLQRYKGLGEMNPTQLWETTMNPATR 595

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +  ++IN  +      +     LMG   + R +FI++ A  + ++ 
Sbjct: 596 KMKLIKINDAI----QAEKIFVTLMGDDVEPRREFIEQNALDVVNLD 638


>gi|302552701|ref|ZP_07305043.1| DNA gyrase, B subunit [Streptomyces viridochromogenes DSM 40736]
 gi|302470319|gb|EFL33412.1| DNA gyrase, B subunit [Streptomyces viridochromogenes DSM 40736]
          Length = 690

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 256/686 (37%), Positives = 375/686 (54%), Gaps = 25/686 (3%)

Query: 18  GSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHL 77
            S    + +  +      A  SA+ +YDAS+I +LEGL+ VR RPGMYIG T E+ LHHL
Sbjct: 11  DSGNPNENNPSVEAMAGVAEASATASYDASAITVLEGLDAVRKRPGMYIGSTGERGLHHL 70

Query: 78  FSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137
             EV+DN++DE +AG+A+ I+V++  +G + VVDNGRGIPV   P    K  +E++LT L
Sbjct: 71  VYEVVDNSVDEALAGHADTIDVTILADGGVRVVDNGRGIPVGIVP-SEGKPAVEVVLTVL 129

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKF    Y +SGGLHGVG+SVVNALS ++ V V      ++Q++  G+P +PL K E
Sbjct: 130 HAGGKFGGGGYAVSGGLHGVGVSVVNALSSKVSVEVKTDGYRWTQEYKMGVPTAPLAKHE 189

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI------ 251
                 GT +TF  D  IF     +    L +  Q  A+L+  +    + ++E       
Sbjct: 190 ATEE-TGTSVTFWADGDIFET-TDYSFETLSRRFQEMAFLNKGLTIKLTDERESAKAVTG 247

Query: 252 -----AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
                A++    +   +++ GG+  +++     +             +      ++E A+
Sbjct: 248 ADEAGADEKAEVKAVTYHYEGGIVDFVKYLNSRKGEAVHPTVIDLEAEDRDKHLSLEIAM 307

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLM 363
            W       + S+ N I T EGGTHE G R ALT  I KYA   +   ++  ++  DD+ 
Sbjct: 308 QWNGGYTEGVYSFANIIHTHEGGTHEEGFRAALTSLINKYARDKRLLREKDDNLTGDDIR 367

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                I+SV + EP+F GQTKTKL + +A+  V+  + +    +L +NP EA  ++   I
Sbjct: 368 EGLTAIISVKLSEPQFEGQTKTKLGNTEAKTFVQKVVYEHLADWLDRNPNEAVDIIRKGI 427

Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           + +  R+  RK R++ R+   +    LPGKL+DC  N     E+FIVEGDSAGGSAK  R
Sbjct: 428 QAATARVAARKARDLTRRKGLLETASLPGKLSDCQSNDPDKCEIFIVEGDSAGGSAKSGR 487

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           N   QA+LP+RGKILNV  A  +KI  NQ+I  L+ A G      +  E LRY K+I+M 
Sbjct: 488 NPQYQAILPIRGKILNVEKARIDKILQNQEIQALISAFGTGVHEDFDIEKLRYHKIILMA 547

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKIL 601
           DADVDG HI +LLLTF ++ M  L+E  H++L  PPL++I  G     YA+ +  +  ++
Sbjct: 548 DADVDGQHINTLLLTFLFRFMRPLVEAGHVYLSRPPLYKIKWGKDDFEYAYSDRERDALI 607

Query: 602 EEFKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
           E  +  GK      + RFKGLGEM A +L+ T MD   R L +V ++          D  
Sbjct: 608 EMGRNAGKRIKDDSVQRFKGLGEMNAEELRITTMDQEHRVLGQVTLDD----AAQADDLF 663

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
           + LMG   + R  FIQ  A  +  + 
Sbjct: 664 SVLMGEDVEARRAFIQRNAKDVRFLD 689


>gi|269217830|ref|ZP_06161684.1| DNA gyrase, B subunit [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269212765|gb|EEZ79105.1| DNA gyrase, B subunit [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 693

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 251/698 (35%), Positives = 366/698 (52%), Gaps = 38/698 (5%)

Query: 19  SSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLF 78
           ++++       P+  +    S    YDASSI +LEGLE VR RPGMYIG T E+ LHH  
Sbjct: 2   TTDETSADNAAPEEESVVKVSKGQAYDASSITVLEGLEAVRKRPGMYIGSTGERGLHHCV 61

Query: 79  SEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLH 138
            EV+DN++DE +AG  + IEV++  +G L V DNGRGIPV  HP   +K  +E+++T LH
Sbjct: 62  YEVVDNSVDEALAGICDHIEVTILADGGLRVRDNGRGIPVNEHP-TEHKPAVEVVMTILH 120

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKF N  Y +SGGLHGVG+SVVNALS  +   V R   ++   F  G+P  PLE+  +
Sbjct: 121 AGGKFGNGGYAVSGGLHGVGVSVVNALSTRMETEVRRDGYVWRISFENGVPTGPLER-GE 179

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------- 249
             ++ GT  TF  +P IF     +D   L +  Q  A+L+  ++   + ++         
Sbjct: 180 QTDEHGTTQTFWANPDIFETTH-YDFETLRRRFQQMAFLNKDLRITLTDERPTATPEGDE 238

Query: 250 ---EIAEKYGIP--EKEEFYFPGGLKTYLQTKLENR--SLISSEIFTGKTEKKG-----T 297
              E  E    P      + + GGL  Y++     +   ++  ++   + E +       
Sbjct: 239 VVGETGEGSPTPGYRSVSYMYSGGLLDYVKHLNTTKKVEVVHPDVVYFEAEDRERQIQCE 298

Query: 298 HRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
                E A+ W     E   ++ NTI T EGGTHE G R ALT  I KYA        + 
Sbjct: 299 VAMQCEVAMQWTSAYSETLNTFANTINTTEGGTHEEGFRSALTSVINKYARDKGLLKDKD 358

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
            ++  DD+      I+SV +  P+F GQTKTKL + +A+  V+  +      +L  +P E
Sbjct: 359 PNLSGDDIREGLTAIISVKLGNPQFEGQTKTKLGNTEARTFVQQQVYSHLTDWLDMHPNE 418

Query: 415 ATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   ++    R   RK RE  R+ + +    +PGKL DC+       E+FIVEGDS
Sbjct: 419 AKDIIRKALQAFAARAAARKAREATRRKSVLESASMPGKLKDCTSRNPEECEIFIVEGDS 478

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSA   R+  +QA++P+RGKILNV  A  ++  ++  I  L+ A G     ++    L
Sbjct: 479 AGGSAVNGRDPEHQAIMPIRGKILNVEKARLDRALSSDTIQGLITAFGTGIGDEFDMAKL 538

Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAH 592
           RY K++ M DADVDG+HIA+LLLT  Y+ M  LIE  H++L  PPL+RI        Y  
Sbjct: 539 RYHKIVFMADADVDGSHIATLLLTLVYRYMRPLIEGGHVYLAMPPLYRIKWTNAVHDYVF 598

Query: 593 DEEHKQKILEEFKKHG-----KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINK 647
            +  + + L E K  G     +    I R+KGLGEM A +L +T M+   RTL +V I+ 
Sbjct: 599 SDRERDEKLVEGKDKGFRLPREESQRIQRYKGLGEMNAEELWDTTMNPEARTLKQVSIDD 658

Query: 648 DLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
                  T ++ + LMG   + R  FIQ  A  +  + 
Sbjct: 659 ----AAATDETFSILMGEDVESRRGFIQRNAHDVRFLD 692


>gi|256786618|ref|ZP_05525049.1| DNA gyrase subunit B [Streptomyces lividans TK24]
 gi|289770511|ref|ZP_06529889.1| DNA gyrase, B subunit [Streptomyces lividans TK24]
 gi|289700710|gb|EFD68139.1| DNA gyrase, B subunit [Streptomyces lividans TK24]
          Length = 694

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 250/691 (36%), Positives = 375/691 (54%), Gaps = 25/691 (3%)

Query: 13  PPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEK 72
                 +         + D+ + ++  AS +YDAS+I +LEGL+ VR RPGMYIG T E+
Sbjct: 10  ADSGNPNENNPSTDTGVNDAVSTSHGDASASYDASAITVLEGLDAVRKRPGMYIGSTGER 69

Query: 73  ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
            LHHL  EV+DN++DE +AG+A+ I+V++  +G + VVDNGRGIPV   P    K  +E+
Sbjct: 70  GLHHLVQEVVDNSVDEALAGHADTIDVTILPDGGVRVVDNGRGIPVGIVP-SEGKPAVEV 128

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
           +LT LHAGGKF    Y +SGGLHGVG+SVVNALS  + V V      ++Q++  G+P + 
Sbjct: 129 VLTVLHAGGKFGGGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGYRWTQEYKLGVPTAS 188

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI- 251
           L + E      GT +TF  D  IF     +    L +  Q  A+L+  +K   + ++E  
Sbjct: 189 LARHEATEE-TGTTVTFWADGDIFET-TDYSFETLSRRFQEMAFLNKGLKINLTDERESA 246

Query: 252 ----------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
                      ++    +   +++ GG+  ++      +  +          +      +
Sbjct: 247 KATAGADEAGEDEKHEVKSVSYHYEGGIVDFVTYLNSRKGELVHPTVIDLEAEDKDKSLS 306

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISII 358
           +E A+ W       + S+ N I T EGGTHE G R ALT  I KYA   +   ++  ++ 
Sbjct: 307 LEVAMQWNGGYTEGVYSFANIIHTHEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLT 366

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+      I+SV + EP+F GQTKTKL + + +  V+  + +    +L +NP EA  +
Sbjct: 367 GDDIREGLTAIISVKLAEPQFEGQTKTKLGNTEVKTFVQKVVYEHLTDWLDRNPNEAADI 426

Query: 419 LEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           +   I+ +  R+  RK R++ R+   +    LPGKL+DC  N     E+FIVEGDSAGGS
Sbjct: 427 IRKGIQAAHARVAARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGS 486

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  RN   QA+LP+RGKILNV  A  ++I  NQ+I  ++ A G      +  E LRY K
Sbjct: 487 AKSGRNPQYQAILPIRGKILNVEKARIDRILQNQEIQAMISAFGTGVHEDFDIEKLRYHK 546

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEH 596
           +I+M DADVDG HI +LLLTF ++ M  L+E  H++L  PPL++I  G     YA+ +  
Sbjct: 547 IILMADADVDGQHINTLLLTFLFRFMRPLVESGHVYLSRPPLYKIKWGRDDFEYAYSDRE 606

Query: 597 KQKILEEFKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
           +  ++E  ++ GK   +  + RFKGLGEM A +L+ T MD   R L +V ++        
Sbjct: 607 RDALIEMGRQAGKRIREDSVQRFKGLGEMNAEELRITTMDQEHRVLGQVTLDD----AAQ 662

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
             D  + LMG   + R  FIQ  A  +  + 
Sbjct: 663 ADDLFSVLMGEDVEARRAFIQRNAKDVRFLD 693


>gi|326803543|ref|YP_004321361.1| DNA topoisomerase IV, B subunit [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650531|gb|AEA00714.1| DNA topoisomerase IV, B subunit [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 691

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 249/656 (37%), Positives = 364/656 (55%), Gaps = 32/656 (4%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +++   YD SSI+ILEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AGY + 
Sbjct: 2   AKNSKATYDESSIQILEGLEAVRKRPGMYIGSTDNRGLHHLVYEIVDNSIDEALAGYCDE 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V++  +  +TV DNGRG+P+  H     K T+E+ILT LHAGGKF  S Y+ SGGLHG
Sbjct: 62  ISVTIHEDNSVTVTDNGRGMPIGKH--SSGKPTVEVILTVLHAGGKFSESAYKTSGGLHG 119

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALSD L VTV R N  + Q FS+G      +       + GT I F PDPKIF
Sbjct: 120 VGSSVVNALSDSLEVTVYRDNKKYYQSFSQGGKPHKPKLTSHKSKQTGTSIHFHPDPKIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
           G    F++  + +  + KA+L+  +   ++ +K          +E F++  GL  ++   
Sbjct: 180 GA-TEFNSDTIKEQLREKAFLTKGLAIHFTDEK-------TDSQESFHYEDGLVEFIHYL 231

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            EN+ ++    +    +K  +    +E A  + +     I S+ N + T +GGTHE+ L+
Sbjct: 232 NENKEVLQGVTYI--EDKDKSSNIEMELAFQYNDGYSETILSFVNNVRTPDGGTHETALK 289

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLD 391
             +T+   +YA        +  ++   D+      ++SV I E   +F GQTK KL +  
Sbjct: 290 TGMTKAFNEYARKVNLIKPKEKNLEGSDVREGFTAVISVRIPEEILQFEGQTKGKLGTPQ 349

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR--- 448
           A+  VEN +      YL++N   A  L+   I+  + R   RK RE +R +   K +   
Sbjct: 350 ARLAVENMVNTHLSIYLLENGEIAQMLVRKAIKARQTREAARKAREESRHSKKGKSKETL 409

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           L GKL           ELF+VEGDSAGGSAK  R+R  QA+LPLRGK+LN   A    I 
Sbjct: 410 LSGKLTPAQSKNTKKNELFLVEGDSAGGSAKLGRDRKFQAILPLRGKVLNTEKASLTDIL 469

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            N+++  ++  +G     ++   D  Y+KVIIMTDAD DGAHI  LLLTFFY+ M  LIE
Sbjct: 470 KNEELNTIIHTVGAGVGPEFDIHDSNYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIE 529

Query: 569 QKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
              +++  PPL+++++G     K  YA  +E   +  ++F K       + R+KGLGEM 
Sbjct: 530 AGKVYIAMPPLYKLSRGKGKNEKIAYAWTDEELAQETKKFGK----GYTLQRYKGLGEMN 585

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           A QL +T M+   RTL+RV ++     L   +  ++ LMG K + R  +I++   F
Sbjct: 586 ADQLWDTTMNPETRTLIRVTLDD----LSQAEKRVSVLMGNKVEPRRDWIEDNVQF 637


>gi|299117008|emb|CBN73779.1| DNA topoisomerase IV subunit B [Ectocarpus siliculosus]
          Length = 688

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 240/688 (34%), Positives = 354/688 (51%), Gaps = 23/688 (3%)

Query: 10  STLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT 69
           +   P S  ++    + G    + A A      +Y A  I +LEGLEPVR RPGMYIG T
Sbjct: 11  AATAPLSTNAAASDPRGGP---AAAQAPSRVDGDYGADQITVLEGLEPVRKRPGMYIGST 67

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
             K LHHL  EV+DNA+DE +AGY + + V+L+ +G  TV DNGRGIP + HP+   KS 
Sbjct: 68  GPKGLHHLVFEVVDNAIDEALAGYCDTVYVTLEEDGSCTVRDNGRGIPCDIHPR-TKKSA 126

Query: 130 LEIILTTLHAGGKFDNST--YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187
           LE +LT LHAGGKF      Y++SGGLHGVG+SVVNALS    V V R     S  F RG
Sbjct: 127 LETVLTVLHAGGKFGGDESGYKVSGGLHGVGVSVVNALSQWAEVEVVRGGKRHSLSFERG 186

Query: 188 IPLSP-LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
                            GT + F PDP+IF     F+  RL       AYL+  V    +
Sbjct: 187 KTQGDLFTADAGAEEAGGTAVRFLPDPEIFKTTTEFEFERLSGRMDELAYLNAGVSIVMA 246

Query: 247 CDKE-IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGK--TEKKGTHRGTVE 303
             +  + E     + E +   GG++ +++   + +  +  ++   +   E+ G       
Sbjct: 247 DARSGVDEDGNFKKTETYLHKGGVQEFVELMCKEKQHLHPDMKVIRALGERDGVQVEAC- 305

Query: 304 WAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDD 361
            + +       + S+ N I T +GGTH  GL+  +TR +      +   +    ++  D 
Sbjct: 306 LSWSSDMYTDSLVSFANGIRTGDGGTHLEGLKSIVTRTVNSMGRKSGKLKDSQSNLGGDF 365

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
           +      ++SV + EPEF GQTK +L + + +  V++ + +        +P     +L+ 
Sbjct: 366 VREGLTAVVSVKVPEPEFEGQTKNRLGNPEVRGIVDSIVGEELVKLFEWHPKILGAILDK 425

Query: 422 VIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
                      +  R++ R+ + +    LPGKLADC+      +E++IVEGDSA GSAKQ
Sbjct: 426 ASSAQAAAAAAKAARDMVRRKSLLTSTVLPGKLADCASRDPVESEIYIVEGDSAAGSAKQ 485

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVI 539
            R+R  QA+LPLRGKILN+    SE+I  N ++  L+ ALG   +    +   LRY +++
Sbjct: 486 GRDRRTQAILPLRGKILNIEKCASERIYQNNELQALISALGLGIKGNEFDASSLRYHRIV 545

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599
           +MTDADVDG+HI  LLLTFF++    LIE   +F+  PPL++I QG    Y + +E    
Sbjct: 546 VMTDADVDGSHIRILLLTFFFRYQRSLIENGFVFIACPPLYKIKQGKTEKYVYTQEECDS 605

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
            + E        +++ RFKGLGEM+  QL +T MD  +RTL  V +              
Sbjct: 606 AVSELPAS--PAVQLQRFKGLGEMMPQQLWDTTMDPARRTLKLVTVED----AAAADRIF 659

Query: 660 NKLMGTKADERFKFIQERASF--IDDVG 685
           + LMG     R +FI E A+   +DD+ 
Sbjct: 660 SVLMGDNVGPRKEFINEHANNLKLDDLD 687


>gi|297200945|ref|ZP_06918342.1| DNA gyrase, B subunit [Streptomyces sviceus ATCC 29083]
 gi|297147775|gb|EDY60918.2| DNA gyrase, B subunit [Streptomyces sviceus ATCC 29083]
          Length = 690

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 252/686 (36%), Positives = 381/686 (55%), Gaps = 25/686 (3%)

Query: 18  GSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHL 77
            S    +           +N   + +YDAS+I +LEGL+ VR RPGMYIG T E+ LHHL
Sbjct: 11  DSGNPNENIPSTDVEATSSNGEVTASYDASAITVLEGLDAVRKRPGMYIGSTGERGLHHL 70

Query: 78  FSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137
             EV+DN++DE +AG+A+ I+V++  +G + V+DNGRGIPV   P    K  +E++LT L
Sbjct: 71  VQEVVDNSVDEALAGHADTIDVTILADGGVRVIDNGRGIPVGIVP-SEGKPAVEVVLTVL 129

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKF    Y +SGGLHGVG+SVVNALS ++ V +      ++Q +  G+P +PL + E
Sbjct: 130 HAGGKFGGGGYAVSGGLHGVGVSVVNALSTKVSVEIKTDGYRWTQDYKLGVPTAPLAQHE 189

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI------ 251
              ++ GT +TF  DP IF     +    L +  Q  A+L+  ++   + ++E       
Sbjct: 190 AT-DEHGTTVTFWADPDIFET-TEYSFETLSRRFQEMAFLNKGLRINLTDERESAKATAG 247

Query: 252 -----AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
                 ++    +   +++ GG+  +++     +  +          +      ++E A+
Sbjct: 248 ADEAGEDEKHEVKTVSYHYEGGIVDFVKYLNSRKGEVVHPTVIDLEAEDKDKSLSLELAM 307

Query: 307 AWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLM 363
            W     E + S+ N I T EGGTHE G R ALT  I KYA   +   ++  ++  DD+ 
Sbjct: 308 QWNGGYSEGVYSFANIIHTHEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIR 367

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                I+SV + EP+F GQTKTKL + + +  V+  + +    +L +NP+EA  ++   I
Sbjct: 368 EGLTAIISVKLSEPQFEGQTKTKLGNTEVKTFVQKVVYEHLTDWLDRNPVEAADIIRKSI 427

Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           + +  R+  RK R++ R+   +    LPGKL+DC  N     E+FIVEGDSAGGSAK  R
Sbjct: 428 QAATARVAARKARDLTRRKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGR 487

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           N   QA+LP+RGKILNV  A  +KI  NQ+I  L+ A G      +  E LRY K+I+M 
Sbjct: 488 NPEYQAILPIRGKILNVEKARIDKILQNQEIQALISAFGTGVHEDFDIEKLRYHKIILMA 547

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKIL 601
           DADVDG HI++LLLTF ++ M  L+E  H++L  PPL++I  G   + YA+ +  +  ++
Sbjct: 548 DADVDGQHISTLLLTFLFRFMRPLVEAGHVYLSRPPLYKIKWGRDDIEYAYSDRERDALI 607

Query: 602 EEFKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
           E  ++ GK   +  I RFKGLGEM A +L+ T MD   R L +V ++          D  
Sbjct: 608 EMGRQRGKRIREDSIQRFKGLGEMNAEELRVTTMDQEHRVLGQVTLDD----AAQADDLF 663

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
           + LMG   + R +FIQ  A  +  + 
Sbjct: 664 SVLMGEDVEARRQFIQRNAKDVRFLD 689


>gi|238061919|ref|ZP_04606628.1| DNA gyrase B subunit gyrB [Micromonospora sp. ATCC 39149]
 gi|237883730|gb|EEP72558.1| DNA gyrase B subunit gyrB [Micromonospora sp. ATCC 39149]
          Length = 648

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 238/655 (36%), Positives = 359/655 (54%), Gaps = 19/655 (2%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
                Y A SI +LEGLE VR RPGMYIG T E+ LHHL  EV+DNA+DE +AG+ + I+
Sbjct: 4   QDKQEYGAESITVLEGLEAVRKRPGMYIGSTGERGLHHLVWEVVDNAVDEALAGHCDTID 63

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V L  +G + V DNGRG PV+ HPK   K  +E+ LT LHAGGKFD   Y +SGGLHGVG
Sbjct: 64  VVLLADGGVRVTDNGRGFPVDLHPKL-KKPGVEVALTVLHAGGKFDGKAYAVSGGLHGVG 122

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS  + V + +   ++ Q+++   P    +   +  ++ G+ +TF PD  +F  
Sbjct: 123 VSVVNALSTRMAVEIHKSGFVWRQQYANSKPSPLEK--GEATDRTGSAVTFWPDADVFET 180

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              FD   + +  Q  A+L+  +      ++    + G P +  F + GG+  +++    
Sbjct: 181 VN-FDFQTIYRRLQEMAFLNRGLTIHLLDERVSEGEEGKPREVTFCYKGGIADFVRHLNA 239

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           +++ I   +     E++G    +VE A+ W E     + ++ NTI T EGGTHE G R A
Sbjct: 240 SKNPIHKTVVEFGAEEEG---MSVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRAA 296

Query: 338 LTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           LT  + +Y    +  +    +  +D+      I+SV +  P+F GQTKTKL +   +  V
Sbjct: 297 LTSVVNRYGADKKLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFV 356

Query: 397 ENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           +    +    +  +NP EA  ++ +           ++ ++   RK+ +    +PGKLAD
Sbjct: 357 QRVCNEWLVDWFDRNPAEAKIIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLAD 416

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  
Sbjct: 417 CQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQA 476

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           L+ ALG      +  E LRY KV++M DADVDG HI +LLLT  ++ M  L+E  H++L 
Sbjct: 477 LITALGTGIHDDFDMEKLRYHKVVLMADADVDGQHIQTLLLTLLFRFMRPLVELGHVYLA 536

Query: 576 SPPLFRITQGTK---SVYAHDEEHKQKI--LEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           +PPL++I    K   + YA+ +  +  +  L + KK      +I RFKGLGEM   +L E
Sbjct: 537 APPLYKIKWNKKGDDAQYAYSDRERDGLIALRQQKKPNAKPDDIQRFKGLGEMNYPELWE 596

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T M+   RTL +V ++          +  + LMG   + R  FIQ  A  +  + 
Sbjct: 597 TTMNPATRTLRQVTLDD----AAVADELFSVLMGEDVEARRSFIQRNAKDVRFLD 647


>gi|253576486|ref|ZP_04853815.1| DNA topoisomerase IV, B subunit [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251844123|gb|EES72142.1| DNA topoisomerase IV, B subunit [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 661

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 246/669 (36%), Positives = 355/669 (53%), Gaps = 41/669 (6%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
           D P       S  YDA  I++LEGL  VR RPGMYIG T    LHHL  E++DNA+DE +
Sbjct: 10  DVPGTNADGPSSGYDADDIQVLEGLVAVRKRPGMYIGSTSSSGLHHLVWEIVDNAVDEHL 69

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           A Y   I+++L+ +G +TV+DNGRGIP   H       T +++ T LHAGGKF  + Y+ 
Sbjct: 70  AKYCTKIDITLNKDGSVTVLDNGRGIPTGMHK--TGIPTPQVVYTILHAGGKFGGAGYKK 127

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR----------GIPLSPLEKKEKVR 200
           SGGLHGVG SV NALS+ L V + R   I   +F            G P++ LE      
Sbjct: 128 SGGLHGVGASVTNALSEWLEVEIYRDGKIHRMRFEYWVDEKGIEHVGEPVTGLEIIGNTN 187

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
              GT++TF+PD ++F    G +   L +  Q  A+L+  +K     ++           
Sbjct: 188 K-TGTKVTFKPDIRVFSGGIGLNYDTLAERLQEIAFLNSGLKVTLKDER-------AGRS 239

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYC 319
           +EF++ GG   +++   + + ++   I     E+       VE A+ +     E   S+ 
Sbjct: 240 DEFFYEGGASQFVEFLNDGKDVLHDVIHFY-AERDDI---EVEVALQYNAGYTETLVSFV 295

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N+I T  GGTHE+G + A TR + +YA       ++  ++  +DL    + ++SV + E 
Sbjct: 296 NSIPTRGGGTHETGFKTAYTRVMNEYARKNGMLKEKDKNLEGNDLREGMMAVISVKMSEV 355

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           EF GQTK +L S  A+  VE+ + +    +L +NP  A  L++  I+ S+ R   RK R+
Sbjct: 356 EFVGQTKDQLGSASARSAVESVVGEKMAVFLEENPQVAQTLIKKAIQASKAREAARKARD 415

Query: 438 VNRKTAI--RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
             R          L GKL          TELFIVEGDSAGGSAKQ R+   QA+LPL+GK
Sbjct: 416 EMRSGKKRSESSNLGGKLTPAQSKDYTRTELFIVEGDSAGGSAKQGRDSKLQAILPLKGK 475

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLL 555
            +N   A    I  N +   ++ A+G     ++  ED  + K+IIMTDAD DGAHI  LL
Sbjct: 476 PMNPEKAKLADILKNDEYRAIISAIGAGIGPEFALEDSNFSKIIIMTDADTDGAHIQVLL 535

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQ--GT--KSVYAHDEEHKQKILEEFKKHGKGK 611
           LTFFY+ M  LI+   +++  PPL++IT+  G      YA  +E  Q  L+EF K+    
Sbjct: 536 LTFFYRYMKPLIDAGRVYIAQPPLYKITRRSGKLETVRYAWTDEQLQNYLKEFGKN---- 591

Query: 612 IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERF 671
            E+ R+KGLGEM   QL ET M+   RT+L+V+I          +  ++ LMG K D R 
Sbjct: 592 FELQRYKGLGEMNPEQLWETTMNPETRTMLQVQIED----AAKAERRVSTLMGDKVDPRK 647

Query: 672 KFIQERASF 680
           ++I E   F
Sbjct: 648 RWIVENVDF 656


>gi|229086165|ref|ZP_04218383.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock3-44]
 gi|228697145|gb|EEL49912.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock3-44]
          Length = 654

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 242/651 (37%), Positives = 364/651 (55%), Gaps = 36/651 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AG+ + I V + 
Sbjct: 7   QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++VVD GRG+P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 67  KDNSISVVDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L VT+ R   ++ Q+F  G +P++ LEK  K + + GT + F+PDP IF     
Sbjct: 125 NALSEWLVVTIKRDGNVYEQRFENGGVPVTTLEKIGKTK-QSGTTMHFKPDPSIFSTTN- 182

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L +  +  A+L   +K     ++   E       + F++  G++ ++    E + 
Sbjct: 183 YNYETLCERLRESAFLLKGMKITIKDERNDLE-------DVFHYETGIEAFVAYLNEEKD 235

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I   +     E+ G      E A  + +     I S+ N + T +GGTHE+G + A+TR
Sbjct: 236 SIHPVV-YFAGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA       ++  ++   D+      I+SV + E   +F GQTK KL + +A+ ++
Sbjct: 292 VFNEYARKVSMLKEKDKNLEGTDIREGLAAIVSVRVPEDLLQFEGQTKGKLGTSEARSSI 351

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKL 453
           +  + +   ++L +NP  AT L++  I+ ++ R   RK RE  R    +K     L GKL
Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVKKAIKAAQAREAARKAREEARTGKKKKRSEGTLSGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I
Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A+G    +++  ED+ Y+KV+IMTDAD DGAHI  LLLTFFY+ M  LIE   +F
Sbjct: 472 NTIIYAIGGGVGNEFSVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G        YA  +E    + ++  K       + R+KGLGEM A QL 
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGK----GYMLQRYKGLGEMNADQLW 587

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV+I+         +  +  LMG K + R K+I+    F
Sbjct: 588 ETTMNPETRTLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIERNVQF 634


>gi|116668574|ref|YP_829507.1| DNA gyrase subunit B [Arthrobacter sp. FB24]
 gi|116608683|gb|ABK01407.1| DNA gyrase subunit B [Arthrobacter sp. FB24]
          Length = 696

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 251/712 (35%), Positives = 369/712 (51%), Gaps = 44/712 (6%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           M +D+ D+ +  P           +    PD+PA A +     Y AS I +LEGLE VR 
Sbjct: 1   MANDNADIPAVEP---------AAEDARTPDAPAEAAER--KGYGASDITVLEGLEAVRK 49

Query: 61  RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           RPGMYIG T  + LHHL  EV+DN++DE +AGY   IE+ L  +G + VVD+GRGIPV+ 
Sbjct: 50  RPGMYIGSTGPRGLHHLVYEVVDNSVDEALAGYCTHIEIVLQADGGVKVVDDGRGIPVDM 109

Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
           HP   +K T+E+++T LHAGGKF    Y +SGGLHGVGISVVNALS  +   V RQ  ++
Sbjct: 110 HP-TEHKPTVEVVMTILHAGGKFGGGGYAVSGGLHGVGISVVNALSSRVDTEVRRQGHVW 168

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
              F+ G        K +  ++ GT  TF PD  IF     FD   L    Q  A+L+  
Sbjct: 169 RMSFADGGKPQGSLVKGEETDQTGTTQTFYPDASIFES-TEFDFETLRARFQQMAFLNKG 227

Query: 241 VKTCWSCDKEIA------------------EKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           ++   + ++  A                  E         + +  GL  Y++     + +
Sbjct: 228 LRITLTDERREALESSEDGDLDLDNVPTEGEVAAEYRTVVYQYDDGLLDYVKHLNSGKKV 287

Query: 283 ISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
                     E +    +  +E A+ W       + +Y NTI T EGGTHE G R A+T 
Sbjct: 288 DVVHEDVIAFETEDKDRKIALEMAMQWTNAYSESVHTYANTINTHEGGTHEEGFRAAMTS 347

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I +YA       ++  ++  DD+      ++SV + EP+F GQTKTKL + + +  V+ 
Sbjct: 348 LINRYAREKNIIKEKDDNLTGDDIREGLTAVISVKLAEPQFEGQTKTKLGNSEVKGFVQR 407

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCS 457
            + D    +L +NP  A  ++   I  ++ R+  RK R+  R+ + +    +PGKL+DCS
Sbjct: 408 VVTDGLGDWLERNPGPARDVIRKAISAAQARMAARKARDNARRKSPLESFGMPGKLSDCS 467

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                  E++IVEGDSAGGSAK+ RN   QA+LPLRGKILNV  A  +K   N ++  ++
Sbjct: 468 SKDPEKCEVYIVEGDSAGGSAKRGRNPETQAILPLRGKILNVERARLDKALGNNEVQSMI 527

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A G      +    LRY K+++M DADVDG HI +LL+T  ++ M  LIE  +++L  P
Sbjct: 528 TAFGTGIGEDFDLAKLRYHKIVLMADADVDGQHITTLLMTLLFRYMRPLIENGYVYLAQP 587

Query: 578 PLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAM 633
           PL+RI        Y + +  +   L   +  G+   +   I R+KGLGEM  ++L +T M
Sbjct: 588 PLYRIKWSNAPHDYVYSDRERDARLLAGQAAGRRIPKDNGIQRYKGLGEMDYTELWDTTM 647

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D + RTLL+V ++  L            LMG   + R  FIQ+ A  +  + 
Sbjct: 648 DPDHRTLLQVTMDDAL----AADQIFTVLMGEDVESRRNFIQQNAKDVRFLD 695


>gi|290792686|gb|ADD63785.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|290792694|gb|ADD63789.1| DNA gyrase subunit B [Borrelia hermsii]
          Length = 634

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 244/647 (37%), Positives = 366/647 (56%), Gaps = 19/647 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y AS+I++L+GLE VR RPGMYIG      LHHL  EV+DN++DE +AG+ + IEV ++
Sbjct: 2   SYVASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLVYEVVDNSIDEALAGFCDKIEVIIN 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV DNGRGIP + H +    S LE++LT LH+GGKF+  TY++SGGLHGVGISVV
Sbjct: 62  SDNSVTVNDNGRGIPTDVHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L V V+R   +F Q +SRGIP S ++    V + RGT++TF  D +IF     +
Sbjct: 121 NALSSFLAVIVSRDGKLFKQTYSRGIPTSEVDIIG-VSSARGTKVTFLADSEIFETL-EY 178

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L K  +  A+L+ +++      +   EK        FYF GG+K ++     N   
Sbjct: 179 DFETLSKRLRELAFLNDKIRISIEDRRSGKEKLLE-----FYFEGGIKAFVDYITNNSKN 233

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           I +E +  +          V   + W E   +   S+ N I T EGGTH +G +    + 
Sbjct: 234 IQNEPYFIEGSCDDVI---VSVGLKWTEGYSDHILSFVNNINTREGGTHVAGFKSGFLKA 290

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + +    ++   K   S+  DD       ++S+ I EP+F GQTK KL +   ++ VE  
Sbjct: 291 MSEAFRDSKISKKDVPSLTLDDFKEGLTAVISIKIPEPQFEGQTKGKLGNSYVKKIVETI 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458
           + D     +  N +E   +L   I  +  R   RK R    +K+A   L LPGKLADC+ 
Sbjct: 351 VHDGLLKVIDDNLLEVDIILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCAS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E++IVEGDSAGGSAK  R+R +QA+LPL GK+LNV     +K+  N +++ ++ 
Sbjct: 411 KNPADREIYIVEGDSAGGSAKMGRDRFSQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           +LG      +  E LRY K+IIM DADVDG+HI +LLLTFF++ M +LIE  H+++  PP
Sbjct: 471 SLGAGVGKTFYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIENGHVYIAMPP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+++    +  Y +D+  K+  L   +   + K+ + R+KGLGEM  +QL ET M+   R
Sbjct: 531 LYKLKYENREHYFYDDLEKEAFLGSIETGKRDKVSLQRYKGLGEMNPTQLWETTMNPATR 590

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +  ++IN  +      +     LMG   + R +FI++ A  + ++ 
Sbjct: 591 KMKLIKINDAI----QAEKIFVTLMGDDVEPRREFIEQNALDVVNLD 633


>gi|7437457|pir||T10969 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain B -
           Streptomyces coelicolor
 gi|436027|gb|AAA65215.1| DNA gyrase [Streptomyces coelicolor A3(2)]
 gi|1093584|prf||2104262D DNA gyrase
          Length = 686

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 250/691 (36%), Positives = 375/691 (54%), Gaps = 25/691 (3%)

Query: 13  PPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEK 72
                 +         + D+ + ++  AS +YDAS+I +LEGL+ VR RPGMYIG T E+
Sbjct: 2   ADSGNPNENNPSTDTGVNDAVSTSHGDASASYDASAITVLEGLDAVRKRPGMYIGSTGER 61

Query: 73  ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
            LHHL  EV+DN++DE +AG+A+ I+V++  +G + VVDNGRGIPV   P    K  +E+
Sbjct: 62  GLHHLVQEVVDNSVDEALAGHADTIDVTILPDGGVRVVDNGRGIPVGIVP-SEGKPAVEV 120

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
           +LT LHAGGKF    Y +SGGLHGVG+SVVNALS  + V V      ++Q++  G+P + 
Sbjct: 121 VLTVLHAGGKFGGGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGYRWTQEYKLGVPTAS 180

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI- 251
           L + E      GT +TF  D  IF     +    L +  Q  A+L+  +K   + ++E  
Sbjct: 181 LARHEATEE-TGTTVTFWADGDIFET-TDYSFETLSRRFQEMAFLNKGLKINLTDERESA 238

Query: 252 ----------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
                      ++    +   +++ GG+  ++      +  +          +      +
Sbjct: 239 KATAGADEAGEDEKHEVKSVSYHYEGGIVDFVTYLNSRKGELVHPTVIDLEAEDKDKSLS 298

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISII 358
           +E A+ W       + S+ N I T EGGTHE G R ALT  I KYA   +   ++  ++ 
Sbjct: 299 LEVAMQWNGGYTEGVYSFANIIHTHEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLT 358

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+      I+SV + EP+F GQTKTKL + + +  V+  + +    +L +NP EA  +
Sbjct: 359 GDDIREGLTAIISVKLAEPQFEGQTKTKLGNTEVKTFVQKVVYEHLTDWLDRNPNEAADI 418

Query: 419 LEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           +   I+ +  R+  RK R++ R+   +    LPGKL+DC  N     E+FIVEGDSAGGS
Sbjct: 419 IRKGIQAAHARVAARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGS 478

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  RN   QA+LP+RGKILNV  A  ++I  NQ+I  ++ A G      +  E LRY K
Sbjct: 479 AKSGRNPQYQAILPIRGKILNVEKARIDRILQNQEIQAMISAFGTGVHEDFDIEKLRYHK 538

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEH 596
           +I+M DADVDG HI +LLLTF ++ M  L+E  H++L  PPL++I  G     YA+ +  
Sbjct: 539 IILMADADVDGQHINTLLLTFLFRFMRPLVESGHVYLSRPPLYKIKWGRDDFEYAYSDRE 598

Query: 597 KQKILEEFKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
           +  ++E  ++ GK   +  + RFKGLGEM A +L+ T MD   R L +V ++        
Sbjct: 599 RDALIEMGRQAGKRIREDSVQRFKGLGEMNAEELRITTMDQEHRVLGQVTLDD----AAQ 654

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
             D  + LMG   + R  FIQ  A  +  + 
Sbjct: 655 ADDLFSVLMGEDVEARRAFIQRNAKDVRFLD 685


>gi|227494193|ref|ZP_03924509.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM
           15436]
 gi|226831927|gb|EEH64310.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM
           15436]
          Length = 671

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 251/676 (37%), Positives = 364/676 (53%), Gaps = 29/676 (4%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +      + + +Y AS I +LEGLE VR RPGMYIG T E+ LHHL  EV+DNA+DE +A
Sbjct: 2   AEEQTAGTDTSSYGASDITVLEGLEAVRKRPGMYIGSTGERGLHHLVYEVVDNAVDEALA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           GY + IEV++  +G +TVVDNGRGIPV+ HP    K T+E+++T LHAGGKF    Y +S
Sbjct: 62  GYCDHIEVTIREDGAVTVVDNGRGIPVDIHP-TEGKPTVEVVMTILHAGGKFGGGGYAVS 120

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVGISVVNALS  +   + RQ  ++ Q F  G        + +   + GT  TF P
Sbjct: 121 GGLHGVGISVVNALSKRVDTEIRRQGYVWRQSFGNGGKPLTELVRGEETEETGTSQTFYP 180

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY--------------GI 257
           DP+IF     F    L K  Q  A+L+  ++   + ++  A                  +
Sbjct: 181 DPEIFET-VEFSFETLRKRFQQMAFLNKGLRISLTDERATAVDDGDEIAGEDTDENAVKV 239

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
           P    + +  GL  Y++     +   +        E       +VE A+ W +     + 
Sbjct: 240 PLTVTYQYDQGLYDYVKFINSTKKSETIHDDIIAFEHDAEA-LSVEIAMQWTKAYSESVF 298

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
           +Y NTI T EGGTHE G R ALT  I KYA        +  ++  DD+      ++SV +
Sbjct: 299 TYANTISTTEGGTHEEGFRAALTSVINKYAREKGILKDKHDNLSGDDIREGLTAVISVKL 358

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP+F GQTKTKL + +A+  V+  +   F  +L  +P EA  ++   +   E RL  RK
Sbjct: 359 TEPQFEGQTKTKLGNTEARTFVQQQVYSQFGDWLDSHPAEAKAVIIKALSAQEARLAARK 418

Query: 435 QREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            RE  R+   +    +PGKL DCS   A   E++IVEGDSAGGSA   R+  +QA+LPLR
Sbjct: 419 AREATRRKGVLESASMPGKLRDCSSRDAAKCEIYIVEGDSAGGSAVMGRDPEHQAILPLR 478

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIAS 553
           GKILNV  A  ++  ++Q+I  L+ A G     ++    LRY K+++M DADVDG HI +
Sbjct: 479 GKILNVEKARLDRALDSQEIRALISAFGTGIGDEFDISKLRYGKIVLMADADVDGQHITT 538

Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRITQ-GTKSVYAHDEEHKQKILEEFKKHGKGKI 612
           LL+T  ++ M  ++E  H++L  PPL+R+     +  + + +  +   L + K  G+   
Sbjct: 539 LLMTLLFRYMRPIVEAGHVYLAQPPLYRLKWTNAQHEFVYSDAERDAALAKGKAEGRRLP 598

Query: 613 E---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669
           +   + R+KGLGEM A +L ET MD +KRTL ++EI           +  + LMG   + 
Sbjct: 599 KEGGVQRYKGLGEMNAQELWETTMDPSKRTLKKIEI----AEAATADEIFSILMGDDVES 654

Query: 670 RFKFIQERASFIDDVG 685
           R  FIQ  A  +  + 
Sbjct: 655 RRSFIQRNAQDVRFLD 670


>gi|92117840|ref|YP_577569.1| DNA topoisomerase IV subunit B [Nitrobacter hamburgensis X14]
 gi|91800734|gb|ABE63109.1| DNA topoisomerase IV subunit B [Nitrobacter hamburgensis X14]
          Length = 683

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 377/676 (55%), Positives = 485/676 (71%), Gaps = 9/676 (1%)

Query: 15  QSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKAL 74
            S+   +  +  G      +     A  +Y A+ I +LEGLEPVR RPGMYIGGTDEKAL
Sbjct: 11  PSKDLFDASEAKGRPTARDSSRASGAEADYTAADIEVLEGLEPVRRRPGMYIGGTDEKAL 70

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           HHLF+EVIDNAMDE +AG+A  I V L  +GFLTV DNGRGIPV+ HPKFP KS LE+I+
Sbjct: 71  HHLFAEVIDNAMDEALAGHATFIVVELAADGFLTVTDNGRGIPVDPHPKFPKKSALEVIM 130

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
            TLH+GGKFD+  YE SGGLHGVG+SVVNALS  L V VAR   ++   F RG P   L+
Sbjct: 131 CTLHSGGKFDSKVYETSGGLHGVGVSVVNALSSRLEVEVARSQNLYKMTFERGHPRGSLD 190

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
              ++ N+RGT I F+PD  IFG KA F   RL KMT+SKAYL G V+  W C  ++ + 
Sbjct: 191 DLGRISNRRGTTIRFKPDTDIFGPKAAFKPQRLFKMTRSKAYLFGGVEIRWRCAPDLLKG 250

Query: 255 -YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EEN 312
              IP +  F+FPGGLK YL   +   +L+  +IF+GK+ + G H G  EWA+AW  + +
Sbjct: 251 LDDIPAEATFHFPGGLKDYLAAAIHKDTLVHPDIFSGKSGRNGAH-GACEWAVAWTADAD 309

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILS 371
             ++SYCNT+ T +GGTHESGLR AL RG+K +AE     K A S+ S+DLM+ A  +LS
Sbjct: 310 GFLSSYCNTVPTPDGGTHESGLRSALLRGLKDHAERVGQGKHAASVTSEDLMVGAAAMLS 369

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           VF+REPEF GQTK +L + +A R VE A++DPFDH+L  NP++A KLL++VIER++ERLR
Sbjct: 370 VFVREPEFQGQTKDRLATSEASRIVEQAIKDPFDHWLSGNPVQANKLLDFVIERADERLR 429

Query: 432 RRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           RR ++E +RK+A++KLRLPGKLADC+     G+ELFIVEGDSAGGSAKQAR+R  QAVLP
Sbjct: 430 RRAEKETSRKSAVKKLRLPGKLADCTNTATDGSELFIVEGDSAGGSAKQARDRKTQAVLP 489

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHI 551
           LRGKILNVASA  +K+  N Q+ DL+QALGC T + YREEDLRY +VIIMTDADVDGAHI
Sbjct: 490 LRGKILNVASATRDKVTANAQLSDLIQALGCGTGTNYREEDLRYSRVIIMTDADVDGAHI 549

Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK 611
           ASLL+TFFY++M  LI++ HL+L  PPL+R+T G+K+VYA D+ HK  +L+  + +   K
Sbjct: 550 ASLLITFFYRQMRPLIDEGHLYLAVPPLYRLTHGSKTVYARDDAHKDALLKS-EFNANAK 608

Query: 612 IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERF 671
           +++ RFKGLGEM+ +QLKET MD  +RT+LRV +         T DS+ +LMGTKA+ RF
Sbjct: 609 VDVGRFKGLGEMMPAQLKETTMDPARRTMLRVVL--LAEDRDGTADSVERLMGTKAEARF 666

Query: 672 KFIQERASFIDD--VG 685
            FI E+A F  +  + 
Sbjct: 667 AFISEKAEFASEDLLD 682


>gi|170747435|ref|YP_001753695.1| DNA topoisomerase IV subunit B [Methylobacterium radiotolerans JCM
           2831]
 gi|170653957|gb|ACB23012.1| DNA topoisomerase IV, B subunit [Methylobacterium radiotolerans JCM
           2831]
          Length = 686

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 390/694 (56%), Positives = 498/694 (71%), Gaps = 18/694 (2%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAF----ANQSASDNYDASSIRILEGLE 56
           M+D + DLF    P  +G++ +  +     D+ A     A       Y AS I +LEGLE
Sbjct: 1   MSDPARDLFG---PGGKGAAARPPEPRRRLDASASVATLAAAEPEGGYTASDIEVLEGLE 57

Query: 57  PVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGI 116
           PVR RPGMYIGGTDE+ALHHLF+EVIDN+MDE +AG+A+ IEV L+ +G L V DNGRGI
Sbjct: 58  PVRRRPGMYIGGTDERALHHLFAEVIDNSMDEAVAGHASFIEVELEESGALVVTDNGRGI 117

Query: 117 PVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQ 176
           PV+ HPKFP KS LE+I+TTLHAGGKFD+  YE SGGLHGVGISVVNALSD L V VAR 
Sbjct: 118 PVDPHPKFPGKSALEVIMTTLHAGGKFDSKVYETSGGLHGVGISVVNALSDLLEVEVARN 177

Query: 177 NTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAY 236
            T++ Q FSRG     LE   +V+N+RGTR+ F PD +IFG    FD  RL KM +SKAY
Sbjct: 178 QTLYRQTFSRGHAQGALELVGRVQNRRGTRVRFHPDAQIFGS-LKFDPRRLFKMARSKAY 236

Query: 237 LSGRVKTCWSCDKEIAEK-YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           L G V+  W C   + E    +P +    FP GL+ YL   ++ + L++  +F+GK  K 
Sbjct: 237 LFGGVEIRWRCAPALLEGLADVPAEAVHRFPDGLRDYLARDIDGKELVTEAMFSGKITKP 296

Query: 296 GTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KR 353
           G+H G++EWA+AW   E+    SYCNTI T EGGTHE+GLRVAL RG++++AE     KR
Sbjct: 297 GSH-GSLEWAVAWMVAEDGFSHSYCNTIPTPEGGTHEAGLRVALLRGLREHAERVNQAKR 355

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
             ++ +DD+M +   +LSVFIREPEF GQTK KL +++AQR VE A+RD FDH+L  +P 
Sbjct: 356 MTAVTTDDVMATCASMLSVFIREPEFQGQTKDKLATVEAQRIVETAVRDAFDHWLAASPA 415

Query: 414 EATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           +A KLL+WVI+R+EERLRRR+++EV RK+A RKLRLPGKLADCS     G+E+FIVEGDS
Sbjct: 416 QANKLLDWVIDRAEERLRRRQEKEVARKSATRKLRLPGKLADCSAAGTAGSEIFIVEGDS 475

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAKQAR+R+ QA+LPLRGKILNVASA  +K+  NQ I DL  ALGC T + +RE DL
Sbjct: 476 AGGSAKQARDRATQAILPLRGKILNVASASRDKLGANQLISDLTLALGCGTGTAFRETDL 535

Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHD 593
           RYEKVIIMTDADVDGAHIASLL+TFFY++M  LI++ HL+L  PPL+R+ QG+K  YA D
Sbjct: 536 RYEKVIIMTDADVDGAHIASLLITFFYRQMPKLIDRGHLYLAIPPLYRLQQGSKVAYARD 595

Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
           +  +++I++   K G  K+EI RFKGLGEM+ +QLKET MD  KRTLLRV +     + +
Sbjct: 596 DADRERIVKTVFKGG--KVEIGRFKGLGEMMPAQLKETTMDPKKRTLLRVAVLD--EARE 651

Query: 654 DTQDSINKLMGTKADERFKFIQERASFID--DVG 685
            T D++ +LMG K + RF FI ERA+F +  D+ 
Sbjct: 652 STGDTVERLMGNKPEARFAFISERAAFAEGADLD 685


>gi|55821497|ref|YP_139939.1| DNA gyrase subunit B [Streptococcus thermophilus LMG 18311]
 gi|55823426|ref|YP_141867.1| DNA gyrase subunit B [Streptococcus thermophilus CNRZ1066]
 gi|116628216|ref|YP_820835.1| DNA gyrase subunit B [Streptococcus thermophilus LMD-9]
 gi|55737482|gb|AAV61124.1| DNA gyrase B subunit [Streptococcus thermophilus LMG 18311]
 gi|55739411|gb|AAV63052.1| DNA gyrase B subunit [Streptococcus thermophilus CNRZ1066]
 gi|116101493|gb|ABJ66639.1| DNA gyrase subunit B [Streptococcus thermophilus LMD-9]
 gi|312278836|gb|ADQ63493.1| DNA gyrase subunit B [Streptococcus thermophilus ND03]
          Length = 650

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 259/651 (39%), Positives = 378/651 (58%), Gaps = 22/651 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +  +  YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I
Sbjct: 9   EEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHI 68

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGV
Sbjct: 69  KVFIEPDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS +L V V +   I  Q++ RG+ +  L    +     GT + F PDP+IF 
Sbjct: 128 GSSVVNALSTQLDVKVYKNGHIHFQEYKRGVVVDDLRIIGETEEH-GTTVHFIPDPEIFQ 186

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   FD  +L K  Q  A+L+  ++      +E  E     +++ +++ GG+ +Y++   
Sbjct: 187 ETTEFDFGKLAKRFQELAFLNKGLRISIIDKREGLE-----QEKHYHYEGGITSYVKYIN 241

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           EN+ +I  E      E  G    +VE A+ +       + S+ N I T EGGTHE G R 
Sbjct: 242 ENKDVIFDEPIYTYGEMDGI---SVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRT 298

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA   +   ++  ++  DD+      I+SV    P+F GQTKTKL + +  +
Sbjct: 299 ALTRVINDYARQNKILKEKDDNLTGDDVREGLTAIISVKHPNPQFEGQTKTKLGNSEVVK 358

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
                  +    +L++NP  A K++E  I  S+ R+  ++ RE   +K+ +    LPGKL
Sbjct: 359 ITNRLFSEALSRFLLENPAIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS N     ELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I
Sbjct: 419 ADCSSNNPEMNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEI 478

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             L  A+G    S++     RY K++IMTDADVDGAHI +LLLT  Y+ M+ ++E  +++
Sbjct: 479 RSLFTAMGTGFGSEFDVSKARYHKLVIMTDADVDGAHIRTLLLTLIYRFMHPVLEAGYVY 538

Query: 574 LISPPLFRITQGTKSV-YAH---DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PP++ +  G++   Y     D+E K +   E    G+ K  + R+KGLGEM   QL 
Sbjct: 539 IAQPPIYGVKVGSEIKEYIQPGADQEEKLRAALENYSVGRSKPTVQRYKGLGEMDDHQLW 598

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET MD   R L RV ++       +     + LMG K + R +FI+E A +
Sbjct: 599 ETTMDPENRLLARVSVDD----AAEADKIFDMLMGDKVEPRREFIEENAVY 645


>gi|319936688|ref|ZP_08011101.1| DNA gyrase subunit B [Coprobacillus sp. 29_1]
 gi|319808245|gb|EFW04810.1| DNA gyrase subunit B [Coprobacillus sp. 29_1]
          Length = 640

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 258/656 (39%), Positives = 372/656 (56%), Gaps = 22/656 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
                   +YD S I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AG+ 
Sbjct: 1   MEENKVEHSYDESDIQVLEGLEAVRKRPGMYIGTTSARGLHHLVWEIVDNSIDEALAGFC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           N I+V L+    + V+DNGRG+P   H K   KST+E ILT LHAGGKF    Y++SGGL
Sbjct: 61  NEIKVILEKGDIVKVIDNGRGMPTGKHAK-TGKSTVETILTVLHAGGKFGGGGYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDP 213
           HGVG SVVNALS+ L V V R+  I+ Q+F +G +P+  L+      +  GT ++F+ DP
Sbjct: 120 HGVGASVVNALSEWLEVHVHREGHIYYQRFEKGGVPVGDLKIIGDCDD-TGTIVSFKADP 178

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF +   +D   L +  +  A+L+  +K      +    K        +++ GG+K Y+
Sbjct: 179 LIFNETTIYDYDTLNQRIRELAFLNKGLKLILEDHRNEPYKKNE-----YHYEGGIKEYV 233

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHES 332
                N++ I  EI   + E        VE  + + +       S+CN I T EGGTHE 
Sbjct: 234 AYLNRNKTAIHEEIIYVEDEIDDI---KVEVGMQYNDGYQPNIYSFCNNINTHEGGTHEE 290

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R+ALTR I  YA+      K   S+  DD       I+SV   +P++ GQTKTKL + 
Sbjct: 291 GFRLALTRVINNYAKNNNFLKKDDESLNGDDCREGLTAIISVKHPDPQYEGQTKTKLGNS 350

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRL 449
           + ++   N + +  D +L++NP  A+ ++   I  S  R+  ++ RE+  RKTA+  + L
Sbjct: 351 EVRKIASNIISEALDKFLLENPDTASIIMNKAIVASHARMAAKRAREMTRRKTALDSIAL 410

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADCS       E+FIVEGDSAGGSAK  R+R  QA+LPLRGKILNV  A  ++I  
Sbjct: 411 PGKLADCSSKDPSECEVFIVEGDSAGGSAKMGRDRRTQAILPLRGKILNVEKARLDRILG 470

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N +I  ++ A G     ++    LRY K++IMTDADVDG HI  L+LTF Y+ +  LIE+
Sbjct: 471 NAEIRSMITAFGTGIGDEFDISKLRYHKIVIMTDADVDGGHIRILMLTFLYRFLKPLIEE 530

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
             ++   PPL+ +  G +  Y + +   +K+ E+   +   K  I R+KGLGEM A QL 
Sbjct: 531 GFVYAAQPPLYLLKHGKEEHYLYSDYELEKLKEDLGPN--AKYNIQRYKGLGEMNAEQLW 588

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           ET MD   R L +++++  +          + LMG K + R +FIQE A   + + 
Sbjct: 589 ETTMDPENRLLWQIDLDDAM----QADAMFDTLMGEKVEPRREFIQEHAQEAE-LD 639


>gi|295704654|ref|YP_003597729.1| DNA topoisomerase IV subunit B [Bacillus megaterium DSM 319]
 gi|294802313|gb|ADF39379.1| DNA topoisomerase IV, subunit B [Bacillus megaterium DSM 319]
          Length = 658

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 244/651 (37%), Positives = 361/651 (55%), Gaps = 36/651 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY+  +I++LEGL+ VR RPGMYIG TD + LHHL  E++DN++DE +AGY   I V++ 
Sbjct: 8   NYNEDAIQVLEGLDAVRKRPGMYIGSTDTRGLHHLVYEIVDNSVDEALAGYGEEIIVTIH 67

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V D GRG+P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 68  KDNSISVQDKGRGMPTGMHK--LGKPTPEVILTILHAGGKFGQGGYKTSGGLHGVGASVV 125

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L VT+ R   I+ Q+F  G  P++ LEK  K +   GT I F+PD  IF     
Sbjct: 126 NALSEWLTVTIHRDGFIYEQRFENGGKPVTTLEKIGKTKK-TGTTIHFKPDATIFSTTV- 183

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L +  +  A+L    K      +           + FY+  G++ ++    E + 
Sbjct: 184 YNYDTLCERLRESAFLLKGFKIELIDKRH-------DRHDIFYYETGIQAFVSYLNEEKD 236

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            +   +F         H   VE+A  + +     I S+ N + T +GGTHESG + A+TR
Sbjct: 237 SLHPVVFFEGIH----HNIEVEFAFQFNDGYSETILSFVNNVRTKDGGTHESGAKSAMTR 292

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA       ++  ++   D+      I+SV I E   +F GQTK KL + +A+ +V
Sbjct: 293 AFNEYARKVSLLKEKDKNLEGTDIREGLGAIVSVRIPEELLQFEGQTKGKLGTSEARSSV 352

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKL 453
           +  + +   ++L +NP  ++ L++  I+ ++ R   RK RE  R    RK     L GKL
Sbjct: 353 DAVISEKLAYFLEENPDVSSLLVKKAIKAAQAREAARKAREDARNGKKRKRQETVLSGKL 412

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A  + I  N++I
Sbjct: 413 TPAQSRNPQRNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLQDIFKNEEI 472

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A+G    + +  +D+ Y+K++IMTDAD DGAHI  LLLTFFY+ M  L+E   +F
Sbjct: 473 STIIHAIGGGVGADFTIDDINYDKIVIMTDADTDGAHIQVLLLTFFYRYMKPLVEAGKVF 532

Query: 574 LISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G   K V  Y+  +E  Q  +++  +       I R+KGLGEM A QL 
Sbjct: 533 IALPPLYKVSKGSGKKEVVEYSWSDEELQGAIDKVGR----GYMIQRYKGLGEMNADQLW 588

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV I+            +  LMG K + R K+I+   +F
Sbjct: 589 ETTMNPETRTLIRVRIDD----AARADRRVTTLMGDKVEPRRKWIESNVAF 635


>gi|125624342|ref|YP_001032825.1| DNA topoisomerase IV subunit B [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124493150|emb|CAL98114.1| DNA topoisomerase IV subunit B [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300071126|gb|ADJ60526.1| DNA topoisomerase IV subunit B [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 644

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 247/653 (37%), Positives = 366/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NYD S+I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ N I V++
Sbjct: 6   NNYDDSAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGNKITVTI 65

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G L+V D GRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 66  NADGSLSVEDEGRGMPVGKH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 123

Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R  T++ Q+F  G  P + LEK  K  ++K GT++TF PD  IF   
Sbjct: 124 VNALSTWLEVEITRDGTVYRQRFENGGHPATTLEKIGKAPKSKTGTKVTFMPDSTIFSTT 183

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V       +         EKEEF++  G++ ++    E+
Sbjct: 184 -EFKYNIISERLNESAFLLKEVTISLEDKR-------TDEKEEFHYENGVQDFVAYLNED 235

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  ++  +   + ++ G     VE A+ + +     I S+ N + T +GGTHE+GL+ A+
Sbjct: 236 KDSLTPVL-YFEGKQDG---FEVEVALQYNDGYSENILSFVNNVRTKDGGTHEAGLKTAI 291

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ + +YA        +  ++   D       +LSV I     +F GQTK KL S  A+ 
Sbjct: 292 TKAMNEYARKVNLLKDKDKNLEGSDYREGLTAVLSVLIPEEHLQFEGQTKDKLGSPLARP 351

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451
            V++ + +    YL++N   A  L+   I+  E R   RK RE +R     K       G
Sbjct: 352 VVDSLVSEKLSFYLMENGELAQNLIRKAIKAREAREAARKAREDSRNGKKSKKDKGLLSG 411

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL        +  EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I  N+
Sbjct: 412 KLTPAQTKNPNKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNE 471

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +   D  Y+KVIIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 472 EINTMIYTIGAGVGADFTLADRNYDKVIIMTDADTDGAHIQTLLLTFFYRYMKPLVEAGH 531

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     K  YA  +    ++ ++F K+      + R+KGLGEM A Q
Sbjct: 532 VYIALPPLYKMSEGKGKKEKIEYAWTDGELAELRKQFGKNA----NLQRYKGLGEMNADQ 587

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET MD   RTL++V I+     +   +  ++ LMG K + R K+I+    F
Sbjct: 588 LWETTMDPETRTLIQVTIDD----VAQAEKRVSVLMGDKVEPRRKWIENNVKF 636


>gi|239628764|ref|ZP_04671795.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518910|gb|EEQ58776.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 736

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 275/692 (39%), Positives = 378/692 (54%), Gaps = 23/692 (3%)

Query: 10  STLPPQSQGSSEKLKKSGE---IPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYI 66
           +  P  S   S     +G            + + S +Y A+ I+ILEGLE VR RP MYI
Sbjct: 51  AGSPDCSDAGSPDCGDAGSFGYGDAGSPGCSTAGSPDYGAAQIQILEGLEAVRKRPSMYI 110

Query: 67  GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           G T  + LHH+  E++DNA+DE +AGY   IEV L+ +  +TV DNGRGIP     K   
Sbjct: 111 GNTSAQGLHHMVYEIVDNAVDEALAGYCTEIEVYLNPDNSVTVHDNGRGIPAGIQSK-TG 169

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            S ++++ T LHAGGKFDNS+Y++SGGLHGVG SVVNALS  L V V +    + Q + R
Sbjct: 170 LSAIQVVFTVLHAGGKFDNSSYKVSGGLHGVGASVVNALSSRLKVKVDQDGYSYVQSYER 229

Query: 187 GIPLSPLEKKEKVRNK-RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
           GIPL P+  +    ++  GT +TF PD +IF D   F    L +  Q  A+L   +    
Sbjct: 230 GIPLGPVRVQGTCSSQEHGTTVTFWPDGEIFKDCH-FHPETLRQHMQETAFLMSGLTITL 288

Query: 246 SCDKEIAEKYGIPE--KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
               E  ++   P+     F +  GLK +++        +  +I  G++   GT     E
Sbjct: 289 YDHSESRDQDNHPDAPVWRFCYQDGLKDFVKFINGPEPTLYQDILYGQS---GTDEVLAE 345

Query: 304 WAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SD 360
           +A+       E   S+ N I T EGGTH +G R ALTR I  YA      +        +
Sbjct: 346 FALIHNTGFDEKLRSFANNISTPEGGTHVTGFRQALTRAINDYARKQGMLKESDPSISRE 405

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           +L      ++SV ++EP+F GQTK +L S  A+  +++ +      +L QNP+ A  ++ 
Sbjct: 406 ELSEGMTAVISVRLKEPQFEGQTKQRLGSSSARPVMDHLVYTKLTLFLEQNPLAAKAIIN 465

Query: 421 WVIERSEERLRRRKQREVNR-KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
             +   + R   R  RE+ R KTA+  L LPGKLADCS       ELFIVEGDSAGGSAK
Sbjct: 466 KAVLAKKARAAARSAREMARRKTALSGLSLPGKLADCSSRNPKDCELFIVEGDSAGGSAK 525

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
            AR R NQAVLPLRGKILNV     +K+  N +I  ++ A G      +  + LRY K+I
Sbjct: 526 MARCRENQAVLPLRGKILNVEKTTLDKVCANAEIKAMISAFGTGIMDGFSLDGLRYHKII 585

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599
           +MTDADVDGAHI +LLLTF ++ M  LIE  H++L  PPLFR+ +G K  YA+ +    +
Sbjct: 586 LMTDADVDGAHITTLLLTFLFRFMPRLIEAGHVYLAQPPLFRVEKGKKLWYAYSDSELSQ 645

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN------SLK 653
           ILE+  + G    +I R+KGLGEM A QL ET MD ++RTLLRV      +      S  
Sbjct: 646 ILEDIGRDGN--YKIQRYKGLGEMDAKQLWETTMDPSRRTLLRVGAADSHDTFGQDSSES 703

Query: 654 DTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +T      LMG   + R  +I E A +   + 
Sbjct: 704 ETSRIFRILMGDDVEPRKNYILEHAQYTTMLD 735


>gi|116329807|ref|YP_799525.1| DNA gyrase subunit B [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116123496|gb|ABJ74767.1| DNA gyrase subunit B [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 641

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 252/653 (38%), Positives = 386/653 (59%), Gaps = 19/653 (2%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
                +Y AS I+ILEGLE VR RPGMYIG  DE  LH +  EV+DN++DE +AG+   I
Sbjct: 2   SQKETSYSASQIKILEGLEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            +S+  N  + V DNGRGIPV+ HP     ST+E+++T LHAGGKF+N  Y++SGGLHGV
Sbjct: 62  RISILPNNIIEVKDNGRGIPVDIHP-DKKISTIEVVMTILHAGGKFENDAYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+ L V V ++  I++QK+ +GIP+SP+E K      RGT + F+PD  IF 
Sbjct: 121 GVSVVNALSEYLEVEVHQKGKIYTQKYEKGIPVSPVEIKGDSSE-RGTIVRFKPDATIFT 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F    L    +  A+L+  +       +  AE   +   E F F GG+ ++++   
Sbjct: 180 T-VDFQFDILSARFRELAFLNKGLVLIVEDRRRGAEGENLLRNE-FQFSGGIVSFVEHIN 237

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337
           EN+  +   I   + +       +++++  + E    I  + N I  + GGTH  G R A
Sbjct: 238 ENKHPMHKVIHFERNKDDVLAEISIQYSETYTE---NIFCFTNNINNNLGGTHLEGFRAA 294

Query: 338 LTRGIKKYAELT---QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           LTR +  + +       K    +  +D+      ++S+ I +P+F  QTK KLV+ + + 
Sbjct: 295 LTRTLNDFLKKDTTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKG 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            ++    +    +  +NP    K+LE  I  ++ R   RK R+   RKT +    LPGKL
Sbjct: 355 IMQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKL 414

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS+     +EL++VEGDSAGGSAKQ R+R+ QA+LPL+GKILNV  A  +KI ++++I
Sbjct: 415 ADCSEKDPAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSSEEI 474

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             LV ALG      ++    +RY K++IMTDAD+DG+HI +LLLTFF++ M  +IE+ +L
Sbjct: 475 RILVSALGTGIGEDEFNINKIRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIEKGYL 534

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL+ I  G  S YA+ ++ K+++L+     G  K+ I R+KGLGEM   QL ET 
Sbjct: 535 YVAQPPLYLIKHGKNSTYAYSDKEKEELLKNV---GTEKVVIQRYKGLGEMNPEQLWETT 591

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           MD + R +L+V+++  +    + +++ N LMG +   R +FI+  A+ + ++ 
Sbjct: 592 MDPSNRVVLKVKLDDFV----EAEETFNILMGDEVQPRKQFIEINAAKVANLD 640


>gi|316934362|ref|YP_004109344.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris DX-1]
 gi|315602076|gb|ADU44611.1| DNA topoisomerase IV, B subunit [Rhodopseudomonas palustris DX-1]
          Length = 682

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 386/651 (59%), Positives = 489/651 (75%), Gaps = 9/651 (1%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A D Y A+ I +LEGLEPVR RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+A  IEV
Sbjct: 35  AEDGYTAADIEVLEGLEPVRRRPGMYIGGTDEKALHHLFAEVIDNSMDEALAGHATFIEV 94

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +GFLTV DNGRGIPV+ HPKFP KS LE+I+ TLHAGGKFD+  YE SGGLHGVG+
Sbjct: 95  ELAADGFLTVSDNGRGIPVDPHPKFPKKSALEVIMCTLHAGGKFDSKVYETSGGLHGVGV 154

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS  L V VAR   +    F RG P   LE   KV N+RGTR+ F+PD +IFG K
Sbjct: 155 SVVNALSSRLEVEVARNQQLSRMVFERGHPKGKLESLGKVNNRRGTRVRFKPDTEIFGAK 214

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLE 278
           A F   RL KM +SKAYL G VK  W CD E+ +    +P ++EF+FPGGLK +L   + 
Sbjct: 215 AAFKPQRLFKMARSKAYLFGGVKIRWKCDPELLKGIEDVPAEDEFHFPGGLKDFLGAAIH 274

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVA 337
           N +L+  +IF GK  + G H G  EWA+AW  + +  ++SYCNT+ T +GGTHESGLR A
Sbjct: 275 NDTLVHPDIFAGKAGRNGAH-GACEWAVAWTADADGFLSSYCNTVPTPDGGTHESGLRSA 333

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L RG+K +AE     KRA SI S+D+M+ A  +LSVF+REPEF GQTK +L + +AQ+ V
Sbjct: 334 LLRGLKDHAERAGQGKRASSITSEDVMVGAAIMLSVFVREPEFQGQTKDRLATAEAQKIV 393

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           E A++DPFDH+L  NP++A KLL++V+ER+EERLRRR+++E++RKTA++KLRLPGKLADC
Sbjct: 394 EQAIKDPFDHWLSGNPVQANKLLDFVVERAEERLRRRQEKEISRKTAVKKLRLPGKLADC 453

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +   A G+ELFIVEGDSAGGSAKQAR+R  QAVLPLRGKILNVASAG +K+  N Q+ DL
Sbjct: 454 TSTAAEGSELFIVEGDSAGGSAKQARDRKTQAVLPLRGKILNVASAGKDKVVANAQLSDL 513

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           +QALG  T   YREEDLRY ++IIMTDADVDGAHIASLL+TFFY++M  LI++ HL+L  
Sbjct: 514 IQALGAGTGVNYREEDLRYSRIIIMTDADVDGAHIASLLITFFYRQMPKLIDEGHLYLAV 573

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+R+T G K+VYA D+ HK+++L++ + +   K+++ RFKGLGEM+ +QLKET MD  
Sbjct: 574 PPLYRLTHGAKTVYARDDAHKEELLKK-EFNANAKVDVGRFKGLGEMMPTQLKETTMDPA 632

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD--VG 685
           KRTLLRV +  D      T +S+ +LMGTKA+ RF FI E+A F  +  + 
Sbjct: 633 KRTLLRVVLLADDRDG--TANSVERLMGTKAEARFAFISEKAEFASEEMLD 681


>gi|116490131|ref|YP_809655.1| DNA gyrase subunit B [Oenococcus oeni PSU-1]
 gi|116090856|gb|ABJ56010.1| DNA gyrase subunit B [Oenococcus oeni PSU-1]
          Length = 652

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 250/656 (38%), Positives = 372/656 (56%), Gaps = 22/656 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
             S +++Y  SSI+ILEGLE VR RPGMYIG T    LHHL  E+IDN +DE +AG+A+ 
Sbjct: 11  APSDNNSYGGSSIQILEGLEAVRKRPGMYIGSTASSGLHHLVWEIIDNGIDEALAGFAHH 70

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           + ++++ +  +T+ D+GRG+PVE  PK   +  +E + T LHAGGKFD+ +Y++SGGLHG
Sbjct: 71  VTLTIEKDNSITITDDGRGVPVEIQPK-TGRPAMEAVFTILHAGGKFDSKSYKVSGGLHG 129

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKI 215
           VG SVVNALS E+ V V R N I+   F RG   + ++  ++    KRGT + F PDP I
Sbjct: 130 VGASVVNALSKEMDVRVYRDNKIYYMDFERGHIKTEMKLLDEPMRLKRGTIVHFAPDPDI 189

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   FD   L    +  A+L+  ++   +  +    K      E F + GG+  Y++ 
Sbjct: 190 FRETIVFDYRTLASRIRELAFLNKGLRLSTTDKRVDPVKN-----ESFMYEGGIAEYVKF 244

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGL 334
             +N+  +  E    + E+ G     VE A+ + +     + S+ N I T EGGTHE+G 
Sbjct: 245 LNKNKQPLFPEPVYVEGEENGIQ---VEVALQYTDAVAETLMSFTNNIHTHEGGTHETGF 301

Query: 335 RVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           ++ALTR I  YA+     +        +D+      I+S+   +P+F GQTKTKL + DA
Sbjct: 302 KMALTRIINDYAKKKGILKDSDDPLSGEDVREGITAIVSIKHPDPQFEGQTKTKLGNTDA 361

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           Q+ V +     F+ ++++NP  A  +    +I        ++ +    +K+ +    L G
Sbjct: 362 QQVVNHQFSTIFNRFMMENPETARAIANKGLIASKARAAAKKARDLTRKKSGLEISALAG 421

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLAD +      +ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  +K+  N+
Sbjct: 422 KLADNTSRDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKATLDKVLANE 481

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  L  A+G     ++      Y KVIIMTDADVDGAHI +LLLT F++ M  LI+  +
Sbjct: 482 EIRSLFTAMGTGFGEEFDISKAHYHKVIIMTDADVDGAHIRTLLLTLFFRYMRPLIDAGY 541

Query: 572 LFLISPPLFRITQGT--KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +++  PPL+ +  G   + VY   +E   +         K +  I R+KGLGEM A QL 
Sbjct: 542 IYIAQPPLYGVAIGNSDQRVYLDSDEELDQYTATLPASPKPR--IQRYKGLGEMDAVQLW 599

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +T MD   R LLRV    D     +   + + LMG + + R +FI++ A F++D+ 
Sbjct: 600 DTTMDPKHRRLLRV----DPEYQPEVDTTFDMLMGDRVEPRREFIEDNAQFVEDLD 651


>gi|203284344|ref|YP_002222084.1| DNA gyrase, subunit B [Borrelia duttonii Ly]
 gi|201083787|gb|ACH93378.1| DNA gyrase, subunit B [Borrelia duttonii Ly]
          Length = 639

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 239/647 (36%), Positives = 366/647 (56%), Gaps = 19/647 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y AS+I++L+GLE VR RPGMYIG      LHHL  E++DN++DE +AG+ + IEV ++
Sbjct: 7   SYVASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLVYEIVDNSIDEALAGFCDRIEVVIN 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  + V DNGRGIP + H +    S LE++LT LH+GGKF+  TY++SGGLHGVG+SVV
Sbjct: 67  SDNSIMVNDNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGVSVV 125

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L V V+R+  +F Q +SRGIP S +E    V +  GT++TF  D +IF     +
Sbjct: 126 NALSSFLEVVVSREGKLFKQTYSRGIPTSEVEVVG-VSSTTGTKVTFFADSEIFETL-KY 183

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L +  +  A+L+ +++      +   EK+       FYF GG+K ++     N   
Sbjct: 184 DFETLSRRLRELAFLNDKIRISIEDRRLGEEKFLE-----FYFEGGIKAFVDYITNNNKN 238

Query: 283 ISSEIFTGKTE-KKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
           I S  +  +           ++W   + +      S+ N I T EGGTH +G +  L + 
Sbjct: 239 IQSSPYFIEGVCNDVIVSVGLKWTEGYSDN---TLSFVNNINTKEGGTHVAGFKSGLLKA 295

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + +    ++   K   ++  DD       ++S+ + EP+F GQTK KL +   ++ VE  
Sbjct: 296 MSEAFRDSKISKKDIPNLTLDDFKEGLTAVISIKVPEPQFEGQTKGKLGNSYIKKIVETI 355

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458
           + D     + +N +E   +L   I  +  R   RK R    +K+A   L LPGKLADC+ 
Sbjct: 356 VYDGLLRIINENFVEIDIILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCTS 415

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E++IVEGDSAGGSAK  R+R  QA+LPL GK+LNV     +K+  N +++ ++ 
Sbjct: 416 KNPAEREIYIVEGDSAGGSAKMGRDRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 475

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           +LG      +  E LRY K+IIM DADVDG+HI +LLLTFF++ M +LI+ KH+++  PP
Sbjct: 476 SLGAGVGKAFYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIDNKHVYIAMPP 535

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L++I    K  Y +D+  K+  L       + K+ + R+KGLGEM  +QL ET M+   R
Sbjct: 536 LYKIKHENKVHYFYDDFEKETFLGSIDVVKRNKVSLQRYKGLGEMNPTQLWETTMNPATR 595

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +  +EI+  +      +     LMG   + R +FI++ A  + ++ 
Sbjct: 596 KMKLIEIDDAI----QAEKIFVTLMGDDVEPRREFIEQNALDVVNLD 638


>gi|21222282|ref|NP_628061.1| DNA gyrase subunit B [Streptomyces coelicolor A3(2)]
 gi|544466|sp|P35886|GYRB_STRCO RecName: Full=DNA gyrase subunit B
 gi|8247656|emb|CAB92994.1| DNA gyrase subunit B [Streptomyces coelicolor A3(2)]
          Length = 686

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 250/692 (36%), Positives = 376/692 (54%), Gaps = 25/692 (3%)

Query: 12  LPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE 71
           +      +         + D+ + ++  AS +YDAS+I +LEGL+ VR RPGMYIG T E
Sbjct: 1   MADSGNPNENNPSTDTGVNDAVSTSHGDASASYDASAITVLEGLDAVRKRPGMYIGSTGE 60

Query: 72  KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLE 131
           + LHHL  EV+DN++DE +AG+A+ I+V++  +G + VVDNGRGIPV   P    K  +E
Sbjct: 61  RGLHHLVQEVVDNSVDEALAGHADTIDVTILPDGGVRVVDNGRGIPVGIVP-SEGKPAVE 119

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           ++LT LHAGGKF    Y +SGGLHGVG+SVVNALS  + V V      ++Q++  G+P +
Sbjct: 120 VVLTVLHAGGKFGGGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGYRWTQEYKLGVPTA 179

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
            L + E      GT +TF  D  IF     +    L +  Q  A+L+  +K   + ++E 
Sbjct: 180 SLARHEATEE-TGTTVTFWADGDIFET-TDYSFETLSRRFQEMAFLNKGLKINLTDERES 237

Query: 252 -----------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                       ++    +   +++ GG+  ++      +  +          +      
Sbjct: 238 AKATAGADEAGEDEKHEVKSVSYHYEGGIVDFVTYLNSRKGELVHPTVIDLEAEDKDKSL 297

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISI 357
           ++E A+ W       + S+ N I T EGGTHE G R ALT  I KYA   +   ++  ++
Sbjct: 298 SLEVAMQWNGGYTEGVYSFANIIHTHEGGTHEEGFRAALTSLINKYARDKKLLREKDDNL 357

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+SV + EP+F GQTKTKL + + +  V+  + +    +L +NP EA  
Sbjct: 358 TGDDIREGLTAIISVKLAEPQFEGQTKTKLGNTEVKTFVQKVVYEHLTDWLDRNPNEAAD 417

Query: 418 LLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   I+ +  R+  RK R++ R+   +    LPGKL+DC  N     E+FIVEGDSAGG
Sbjct: 418 IIRKGIQAAHARVAARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGG 477

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  RN   QA+LP+RGKILNV  A  ++I  NQ+I  ++ A G      +  E LRY 
Sbjct: 478 SAKSGRNPQYQAILPIRGKILNVEKARIDRILQNQEIQAMISAFGTGVHEDFDIEKLRYH 537

Query: 537 KVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEE 595
           K+I+M DADVDG HI +LLLTF ++ M  L+E  H++L  PPL++I  G     YA+ + 
Sbjct: 538 KIILMADADVDGQHINTLLLTFLFRFMRPLVESGHVYLSRPPLYKIKWGRDDFEYAYSDR 597

Query: 596 HKQKILEEFKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
            +  ++E  ++ GK   +  + RFKGLGEM A +L+ T MD   R L +V ++       
Sbjct: 598 ERDALIEMGRQAGKRIREDSVQRFKGLGEMNAEELRITTMDQEHRVLGQVTLDD----AA 653

Query: 654 DTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              D  + LMG   + R  FIQ  A  +  + 
Sbjct: 654 QADDLFSVLMGEDVEARRAFIQRNAKDVRFLD 685


>gi|83816748|ref|YP_446507.1| DNA gyrase, B subunit [Salinibacter ruber DSM 13855]
 gi|83758142|gb|ABC46255.1| DNA gyrase, B subunit [Salinibacter ruber DSM 13855]
          Length = 652

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 261/654 (39%), Positives = 375/654 (57%), Gaps = 23/654 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y AS+I++LEGLE VR RP MYIG    + LHHL  EV+DN++DE +AG+ + I V +
Sbjct: 13  SDYAASNIQVLEGLEAVRKRPSMYIGDVGLRGLHHLVYEVLDNSIDEAMAGHCDEIGVEI 72

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G +++ DNGRGIPV+ HP   ++S LE+++T LHAGGKFD  +Y++SGGLHGVG+SV
Sbjct: 73  YEDGSVSIEDNGRGIPVDQHP-AEDRSALEVVMTVLHAGGKFDKDSYQVSGGLHGVGVSV 131

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLE--KKEKVRNKRGTRITFRPDPKIFGDK 219
           VNAL+    VTV R  +++ Q +  G+P  P+   +  +   + GTRI F PD  IF   
Sbjct: 132 VNALASRFEVTVWRDGSVWEQNYLCGVPEDPVRRVRPMEAGEETGTRIRFWPDGDIFKT- 190

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L    +  A+L+  V+      +   E+     +E ++   G+  ++    E 
Sbjct: 191 TEFRFETLSDRLRELAFLNAGVRIRVEDHR---EEDKGLARETYHSEEGIIGFVDYLDEA 247

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           R  I  E      E  G     VE A+ + +E  +   S+ N I T EGGTH +G R AL
Sbjct: 248 RDSILDETIYI-AETDG--EVPVELAMQYNDEYNKNVLSFVNNINTHEGGTHVTGFRRAL 304

Query: 339 TRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +K+YA+       +      DD       +LSV + EP+F GQTKTKL + D Q  V
Sbjct: 305 TRTLKRYAQKNDMLSDLKFDLSGDDFREGLTAVLSVKVSEPQFEGQTKTKLGNSDVQGIV 364

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
           E+ +      +L  +P +A +++E VI+ +E R   RK RE V RK A     LPGKLAD
Sbjct: 365 ESLINTELGRWLEDHPDQAERIIEKVIQAAEARAAARKARELVQRKDAFSGGSLPGKLAD 424

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS       EL++VEGDSAGGSAKQAR+R  QA+LPLRGKILNV  A  ++I  + QI +
Sbjct: 425 CSSRDPEEGELYLVEGDSAGGSAKQARDRHFQAILPLRGKILNVEKARLDRILEHDQIQN 484

Query: 516 LVQALG---CRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           +V ALG     T  ++   ++RY K+++MTDADVDGAHI SLLLTFFY+++  LIE+ ++
Sbjct: 485 IVTALGTGLTSTEEEFNMNEMRYHKIVMMTDADVDGAHIRSLLLTFFYRQLRPLIEKGNI 544

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL+RI  G++ +Y   +E  Q  + E +  G     + R+KGLGEM   QL  T 
Sbjct: 545 YIALPPLYRIQNGSQEIYCWSDEEMQTRMAELRADGNS-PSMQRYKGLGEMNPEQLWTTT 603

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           M+   R + +V I              + LMG   + R +FI+  A +   +  
Sbjct: 604 MNPETRKIQQVTIQD----AAAADRLFSTLMGDSVEPRREFIERNAKYAT-IDA 652


>gi|288905669|ref|YP_003430891.1| DNA gyrase subunit B [Streptococcus gallolyticus UCN34]
 gi|288732395|emb|CBI13967.1| DNA gyrase subunit B [Streptococcus gallolyticus UCN34]
          Length = 650

 Score =  602 bits (1551), Expect = e-170,   Method: Composition-based stats.
 Identities = 255/649 (39%), Positives = 377/649 (58%), Gaps = 24/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A  IEV 
Sbjct: 12  AKEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFATHIEVF 71

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGVG S
Sbjct: 72  IEKDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 130

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L V V R   I  Q++ RG  +S L       ++ GT + F PDP+IF +  
Sbjct: 131 VVNALSTQLDVAVHRNGKIHYQEYRRGHVVSDLAVIGDT-DRHGTTVHFTPDPEIFTETT 189

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD  +L K  Q  A+L+  ++   +  +E  E     +++ +++ GG+ +Y++   EN+
Sbjct: 190 VFDFDKLAKRIQELAFLNRGLRISITDKREGIE-----QEKHYHYEGGISSYVEFINENK 244

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
            +I         E  G    +VE A+ +       + S+ N I T EGGTHE G R ALT
Sbjct: 245 EVIFENPIYTDGELDGI---SVEVAMQYTTSYHETVMSFANNIHTHEGGTHEQGFRTALT 301

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA   +   ++  ++  +D+      ++SV    P+F GQTKTKL + +  +   
Sbjct: 302 RVINDYARQNKLLKEKDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 361

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
               + F  +L++NP  A K++E  I  S+ R+  ++ RE   +K+ +    LPGKLADC
Sbjct: 362 RLFSEAFSRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADC 421

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S N A   ELFIVEGDSAGGSAK  R+R +QA+LP+RGKILNV  A  +KI  N++I  L
Sbjct: 422 SSNDATMNELFIVEGDSAGGSAKSGRDREHQAILPIRGKILNVEKASMDKILANEEIRSL 481

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    +++     RY K++IMTDADVDGAHI +LLLT  Y+ M  ++E  ++++  
Sbjct: 482 FTAMGTGFGAEFDVSKARYHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQ 541

Query: 577 PPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           PP++ +  G++   Y       E   Q+ +      G+ K  + R+KGLGEM   QL ET
Sbjct: 542 PPIYGVKVGSEIKEYIQPGANQEIELQEAMAR-HSVGRSKPTVQRYKGLGEMDDHQLWET 600

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            MD   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 601 TMDPENRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 645


>gi|254294168|ref|YP_003060191.1| DNA topoisomerase IV subunit B [Hirschia baltica ATCC 49814]
 gi|254042699|gb|ACT59494.1| DNA topoisomerase IV, B subunit [Hirschia baltica ATCC 49814]
          Length = 653

 Score =  602 bits (1551), Expect = e-170,   Method: Composition-based stats.
 Identities = 343/656 (52%), Positives = 461/656 (70%), Gaps = 9/656 (1%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A   Q+    Y A  I +LEGLEPVR RPGMYIGGTDE+A HHLF+E++DN+MDE +AG+
Sbjct: 2   AAKGQAEKQEYSAKDIEVLEGLEPVRKRPGMYIGGTDERAFHHLFAEILDNSMDEAVAGH 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ I+V L  +G+L+V D+GRGIPV+ HPKFP KS LE+I+TTLH+GGKF N  Y+ +GG
Sbjct: 62  ASRIDVHLRADGYLSVRDDGRGIPVDPHPKFPGKSALEVIMTTLHSGGKFSNKAYQTAGG 121

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVGISVVNALS+ L V VAR   ++ Q F RG  + P+++     N+RGT ++F+PD 
Sbjct: 122 LHGVGISVVNALSERLEVEVARDKKLYFQAFERGHSMGPIKQIGNAPNRRGTVVSFKPDF 181

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE-IAEKYGIPEKEEFYFPGGLKTY 272
           +IFG K  F  ARL +M ++KAYL    +  W CD E + E    P +   ++P GL   
Sbjct: 182 EIFGTKIQFKPARLYQMAKAKAYLHQGAQIHWKCDPELLKENDKTPTEAVLHYPNGLADM 241

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA---WCEENPEITSYCNTILTDEGGT 329
           L+   E + +++S+IF G+ E             +   + EE+    SYCNT+ T +GGT
Sbjct: 242 LKEMSEGKIMVTSDIFAGRVEMDNGAACEWAMCWSANGFGEEDGITRSYCNTVPTRDGGT 301

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           HE+G+R A+T+G++ Y ELT  K+A  I +DD++ SA  +LSVFIREPEF GQTK KL S
Sbjct: 302 HEAGMRSAITKGLRAYGELTNVKKASQITADDILSSAGALLSVFIREPEFVGQTKDKLSS 361

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
            +  R  E ALRD FDH+L  +P EATKLL+W IE+S+ R+RRRK++EV+R++A RKLRL
Sbjct: 362 PEGLRVAEGALRDRFDHWLTASPKEATKLLDWAIEQSDLRMRRRKEKEVSRQSATRKLRL 421

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKL+DCS N    TE+FIVEGDSAGGSAKQARNR  QA+LPLRGKILNVASAG++K+R 
Sbjct: 422 PGKLSDCSSNSKEDTEIFIVEGDSAGGSAKQARNRKTQAILPLRGKILNVASAGADKLRA 481

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N ++ DL  ALG     ++  +DLRY++V+IMTDADVDGAHIA+LL+TFFY++M DLI  
Sbjct: 482 NVELNDLATALGTGIGRKFDIDDLRYQRVVIMTDADVDGAHIAALLITFFYKQMPDLITS 541

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
             LF+  PPL+++  G KS YA D+EHK +++    K     +E+SRFKGLGEM+ +QLK
Sbjct: 542 GRLFMAMPPLYKLAAGNKSAYARDDEHKDELMRTMFK--GKNVEVSRFKGLGEMMPAQLK 599

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           ET MD  KR++ R+ +   L S     + +  LMG KA+ RFKFIQ+ A F++++ 
Sbjct: 600 ETTMDPAKRSMARIALPDGLESPG---ELVETLMGKKAEHRFKFIQDNAEFVEELD 652


>gi|83594042|ref|YP_427794.1| DNA topoisomerase IV subunit B [Rhodospirillum rubrum ATCC 11170]
 gi|83576956|gb|ABC23507.1| Gram negative topoisomerase IV, subunit B [Rhodospirillum rubrum
           ATCC 11170]
          Length = 665

 Score =  602 bits (1551), Expect = e-170,   Method: Composition-based stats.
 Identities = 360/650 (55%), Positives = 468/650 (72%), Gaps = 10/650 (1%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y A SI +LEGLEPVR RPGMYIGGTDE+ALHHL +E++DNAMDE +AGYA +I++ L  
Sbjct: 17  YTARSIEVLEGLEPVRRRPGMYIGGTDERALHHLVAEILDNAMDEAVAGYAQVIDIDLAV 76

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G + V DNGRGIP++ HP+FP+KS LE+ILTTLH+GGKF    Y++SGGLHGVGISVVN
Sbjct: 77  DGSVCVRDNGRGIPIDPHPRFPDKSALEVILTTLHSGGKFGGDAYKVSGGLHGVGISVVN 136

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALSD L V VAR  T+++Q F RG PL PL+K     N+RGT++ F PD +IFG +A F 
Sbjct: 137 ALSDSLRVEVARDRTLWAQDFCRGAPLGPLQKIGPAPNRRGTQVRFHPDAEIFGPRARFK 196

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKE-IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
            A L +M +SKAYL   V+  WSC  E + +  G+P ++ F+FP GL  YL   L NR L
Sbjct: 197 PALLHRMARSKAYLFRGVRIRWSCAPELLPDDAGVPAEDVFHFPNGLGDYLGHALANRPL 256

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRG 341
           +    F G         GTVEWA+ W E++     SY NTI T EGGTHE+GLR ALTRG
Sbjct: 257 VGGRTFAGTANLPDDM-GTVEWALCWPEDDEPFFNSYVNTIPTPEGGTHEAGLRNALTRG 315

Query: 342 IKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
           ++ +AE++ NK+ A ++ ++D++  A  + S+F+R+P+F GQTK KL S +A R VE AL
Sbjct: 316 LRSFAEMSGNKKGAAALTAEDVVGGAAVMFSMFLRDPQFQGQTKEKLASQEATRLVEQAL 375

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
           RDPFDH+L   P  A  LL   +ER++ERLRRR+ +E +RKTA +KLRLPGKL+DC+++ 
Sbjct: 376 RDPFDHWLTGAPDSANLLLTHALERADERLRRRQAKETSRKTATKKLRLPGKLSDCTRST 435

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
             GTELF+VEGDSAGGSAKQAR+R  QAVLPLRGKILNVASA  +K+R NQ++ DL +AL
Sbjct: 436 RQGTELFLVEGDSAGGSAKQARDRQTQAVLPLRGKILNVASASLDKLRGNQELSDLAEAL 495

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           GC TR  +  E LRY+KV+IMTDADVDGAHIASLL+TFF++EM  L+   HL+L  PPL+
Sbjct: 496 GCGTRGAFDLEHLRYDKVVIMTDADVDGAHIASLLMTFFFREMPALVSAGHLYLAMPPLY 555

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           R+TQG  SVYA D+ HK ++++   K  KGK+EISRFKGLGEM  +QL+ET M    R L
Sbjct: 556 RLTQGGTSVYARDDAHKDQLMKTVFKT-KGKVEISRFKGLGEMPPAQLRETTMAYATRQL 614

Query: 641 LRVEI-----NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           LRV +      +D    ++T   + +LMG K + RF+FIQE A F +++ 
Sbjct: 615 LRVTVPGGKTEEDREDARETAKLVEELMGRKPELRFRFIQENARFAENLD 664


>gi|75675845|ref|YP_318266.1| DNA topoisomerase IV subunit B [Nitrobacter winogradskyi Nb-255]
 gi|74420715|gb|ABA04914.1| DNA topoisomerase IV subunit B [Nitrobacter winogradskyi Nb-255]
          Length = 685

 Score =  602 bits (1551), Expect = e-170,   Method: Composition-based stats.
 Identities = 381/686 (55%), Positives = 492/686 (71%), Gaps = 20/686 (2%)

Query: 5   SIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGM 64
           + DLF+    + + S+    ++             A  +Y A+ I +LEGLEPVR RPGM
Sbjct: 14  ADDLFAASETKGRSSARAPGRASG-----------AEADYTAADIEVLEGLEPVRRRPGM 62

Query: 65  YIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKF 124
           YIGGTDEKALHHLF+EVIDNAMDE +AG+A  I V L  +GFLTV DNGRGIPV+ HPKF
Sbjct: 63  YIGGTDEKALHHLFAEVIDNAMDEALAGHATFIVVELAADGFLTVTDNGRGIPVDPHPKF 122

Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184
           P KS LE+I+ TLH+GGKFD+  YE SGGLHGVG+SVVNALS  L V VAR   ++   F
Sbjct: 123 PKKSALEVIMCTLHSGGKFDSKVYETSGGLHGVGVSVVNALSSHLEVEVARSQNLYRMTF 182

Query: 185 SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244
            RG P   LE   ++ N+RGT I F+PD +IFG KA F   RL KMT+SKAYL G V+  
Sbjct: 183 ERGHPKGKLEDLGRIANRRGTTIRFKPDTEIFGAKAAFKPQRLFKMTRSKAYLFGGVEIR 242

Query: 245 WSCDKEIAEK-YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
           W C  E+ +    +P +  F+FPGGLK YL   +   +L+  +IF+G++ + G H G  E
Sbjct: 243 WRCAPELLKGLEDLPPEATFHFPGGLKDYLAAAIHKDTLVHPDIFSGRSGRNGAH-GACE 301

Query: 304 WAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDD 361
           WA+AW  + +  ++SYCNT+ T +GGTHESGLR AL RG+K +AE     KRA SI S+D
Sbjct: 302 WAVAWTADADGFLSSYCNTVPTPDGGTHESGLRSALLRGLKDHAERVGQGKRAGSITSED 361

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
           +M+ A  +LSVF+REPEF GQTK +L + +A R VE A++DPFDH+L  NP +A +LL++
Sbjct: 362 VMVGAAVMLSVFVREPEFQGQTKDRLATAEASRIVEQAIKDPFDHWLSGNPAQANRLLDF 421

Query: 422 VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
           VIER++ERLRRR ++E +RK+A++KLRLPGKLADC+     G+ELFIVEGDSAGGSAKQA
Sbjct: 422 VIERADERLRRRAEKETSRKSAVKKLRLPGKLADCTNTATEGSELFIVEGDSAGGSAKQA 481

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541
           R+R  QAVLPLRGKILNV SA  +K+  N Q+ DL+QALGC T + YREEDLRY +VIIM
Sbjct: 482 RDRKTQAVLPLRGKILNVVSATRDKVTANAQLADLIQALGCGTGTNYREEDLRYSRVIIM 541

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           TDADVDGAHIASLL+TFFY++M  LI++ HL+L  PPL+R+T G+K+VYA DE HK  +L
Sbjct: 542 TDADVDGAHIASLLITFFYRQMPRLIDEGHLYLAVPPLYRLTHGSKTVYARDEAHKDALL 601

Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
           +  + +   K+++ RFKGLGEM+ +QLKET MD  KRT+LRV +       +DT DS+ +
Sbjct: 602 KS-EFNANAKVDVGRFKGLGEMMPAQLKETTMDPAKRTMLRVML--LAEDREDTADSVER 658

Query: 662 LMGTKADERFKFIQERASFI--DDVG 685
           LMGTKA+ RF FI ++A F   D + 
Sbjct: 659 LMGTKAEARFAFISDKAVFASEDMLD 684


>gi|306831763|ref|ZP_07464920.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|304426188|gb|EFM29303.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 650

 Score =  602 bits (1551), Expect = e-170,   Method: Composition-based stats.
 Identities = 255/649 (39%), Positives = 378/649 (58%), Gaps = 24/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A  IEV 
Sbjct: 12  AKEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFATHIEVF 71

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGVG S
Sbjct: 72  IEEDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 130

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L V+V R   I  Q++ RG  +S L       ++ GT + F PDP+IF +  
Sbjct: 131 VVNALSTQLDVSVHRNGKIHYQEYRRGHVVSDLAVIGDT-DRHGTTVHFTPDPEIFTETT 189

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD  +L K  Q  A+L+  ++   +  +E  E     +++ +++ GG+ +Y++   EN+
Sbjct: 190 VFDFDKLAKRIQELAFLNRGLRISITDKREGIE-----QEKHYHYEGGISSYVEFINENK 244

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
            +I         E  G    +VE A+ +       + S+ N I T EGGTHE G R ALT
Sbjct: 245 EVIFENPIYTDGELDGI---SVEVAMQYTTSYHETVMSFANNIHTHEGGTHEQGFRTALT 301

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA   +   ++  ++  +D+      ++SV    P+F GQTKTKL + +  +   
Sbjct: 302 RVINDYARQNKLLKEKDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 361

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
               + F  +L++NP  A K++E  I  S+ R+  ++ RE   +K+ +    LPGKLADC
Sbjct: 362 RLFSEAFSRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADC 421

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S N A   ELFIVEGDSAGGSAK  R+R +QA+LP+RGKILNV  A  +KI  N++I  L
Sbjct: 422 SSNDATMNELFIVEGDSAGGSAKSGRDREHQAILPIRGKILNVEKASMDKILANEEIRSL 481

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    +++     RY K++IMTDADVDGAHI +LLLT  Y+ M  ++E  ++++  
Sbjct: 482 FTAMGTGFGAEFDVSKARYHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQ 541

Query: 577 PPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           PP++ +  G++   Y       E   Q+ +      G+ K  + R+KGLGEM   QL ET
Sbjct: 542 PPIYGVKVGSEIKEYIQPGANQEIELQEAMAR-HSVGRSKPTVQRYKGLGEMDDHQLWET 600

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            MD   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 601 TMDPENRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 645


>gi|52080434|ref|YP_079225.1| DNA topoisomerase IV subunit B [Bacillus licheniformis ATCC 14580]
 gi|52785813|ref|YP_091642.1| DNA topoisomerase IV subunit B [Bacillus licheniformis ATCC 14580]
 gi|52003645|gb|AAU23587.1| subunit of DNA topoisomerase IV [Bacillus licheniformis ATCC 14580]
 gi|52348315|gb|AAU40949.1| ParE [Bacillus licheniformis ATCC 14580]
          Length = 655

 Score =  602 bits (1551), Expect = e-170,   Method: Composition-based stats.
 Identities = 251/650 (38%), Positives = 363/650 (55%), Gaps = 34/650 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y+  SI++LEGLE VR RPGMYIG TD + LHHL  E++DN++DEV+AG+ + I V + 
Sbjct: 8   DYNDDSIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEVLAGHGDHIIVKIH 67

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V D GRG+P   H     K T EIILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 68  KDNSISVQDRGRGMPTGMHK--LGKPTPEIILTVLHAGGKFGQGGYKTSGGLHGVGASVV 125

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+ L VT+ R   ++ Q+F  G        K     K GT I F+PDP +F     F
Sbjct: 126 NALSEWLTVTIERDGNVYRQRFENGGKPVTSLDKIGTTKKTGTLIHFKPDPAMFSTTT-F 184

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L +  +  A+L   +K     +++  +       E F +  G++ ++    E +  
Sbjct: 185 NFETLSERLRESAFLLKGLKIELIDERDQTK-------ETFLYENGIEAFVAYLNEEKD- 236

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
             SE+ + + E  G     V++A  + +     I S+ N + T +GGTHESG + A+TR 
Sbjct: 237 ALSEVVSFEGEHNGI---EVDFAFQFNDGYSENILSFVNNVRTKDGGTHESGAKTAMTRA 293

Query: 342 IKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397
             +YA       ++  ++   D+      I+SV I E   +F GQTK KL + +A+  V+
Sbjct: 294 FNEYARKVALLKEKDKNLEGTDIREGLSAIVSVRIPEELLQFEGQTKGKLGTSEARSAVD 353

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLA 454
             + +   ++L +N   AT L++  I+ S+ R   RK RE  R    RK     L GKL 
Sbjct: 354 AIVSEQLAYFLEENRETATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLT 413

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
                     EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I 
Sbjct: 414 PAQSRNPSKNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIFKNEEIN 473

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++ A+G    + +  ED+ Y+KVIIMTDAD DGAHI  LLLTFFY+ M  LIE   +F+
Sbjct: 474 TIIHAIGGGVGADFDIEDINYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFI 533

Query: 575 ISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
             PPL+++++G   K +  YA  +E    +L++  K       I R+KGLGEM A QL E
Sbjct: 534 ALPPLYKVSKGSGKKEIIEYAWSDEEMDDVLKKVGK----GYTIQRYKGLGEMNADQLWE 589

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           T M+   RTL+RV+I+         +  +  LMG K + R K+I++  +F
Sbjct: 590 TTMNPESRTLVRVKIDD----AARVERRVTTLMGDKVEPRRKWIEKNVAF 635


>gi|292558800|gb|ADE31801.1| DNA gyrase, B subunit [Streptococcus suis GZ1]
          Length = 650

 Score =  602 bits (1551), Expect = e-170,   Method: Composition-based stats.
 Identities = 262/652 (40%), Positives = 382/652 (58%), Gaps = 24/652 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           Q  +  YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I
Sbjct: 9   QEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFADKI 68

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           EV ++ +  +TV+DNGRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGV
Sbjct: 69  EVYIEPDNSITVIDNGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS +L V V +   ++ Q++ RG  ++ LE   +  ++ GT + F PDP+IF 
Sbjct: 128 GSSVVNALSTQLDVHVYKNGQVYFQEYKRGEVVADLEVVGET-DRSGTTVHFTPDPEIFT 186

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   FD A+L K  Q  A+L+  +    +  +E  E+        +++ GG+ +Y++   
Sbjct: 187 ETTEFDFAKLNKRIQELAFLNRGLNLSITDKREGVEQTKE-----YHYEGGIASYVEYLN 241

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRV 336
           EN+ +I       + E       TVE A+ +     E   S+ N I T EGGTHE G R 
Sbjct: 242 ENKDVIFETPIYTEGEMDDI---TVEVAMQYTTSYHENVVSFANNIHTHEGGTHEQGFRT 298

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA+  +   +   ++  +D+      ++SV    P+F GQTKTKL + +  +
Sbjct: 299 ALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPGPQFEGQTKTKLGNSEVVK 358

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
                  D F  +L++NP  A +++E  I  S+ R+  ++ RE   +K+ +    LPGKL
Sbjct: 359 ITNRLFSDAFAEFLLENPQIARRIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS N A  TELFIVEGDSAGGSAK  R+R  QA+LP+RGKILNV  A  +KI  N++I
Sbjct: 419 ADCSSNDAAKTELFIVEGDSAGGSAKSGRDRKFQAILPIRGKILNVKKASMDKILANEEI 478

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             L  A+G    + +     RY+K++IMTDADVDGAHI +LLLT FY+ M  ++E  +++
Sbjct: 479 RSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGYVY 538

Query: 574 LISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           +  PP++ I  G++   Y       E+  Q  LE     G+ K  I R+KGLGEM   QL
Sbjct: 539 IAQPPIYGIKVGSEIKEYIQPGVNQEQELQDALER-HSTGRSKPTIQRYKGLGEMDDHQL 597

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET M+   R + RV ++       +     + LMG K + R +FI+E A +
Sbjct: 598 WETTMNPENRLMARVSVDD----AAEADKIFDMLMGDKVEPRREFIEENAVY 645


>gi|322389469|ref|ZP_08063021.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus
           parasanguinis ATCC 903]
 gi|321143847|gb|EFX39273.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus
           parasanguinis ATCC 903]
          Length = 649

 Score =  602 bits (1551), Expect = e-170,   Method: Composition-based stats.
 Identities = 237/653 (36%), Positives = 364/653 (55%), Gaps = 34/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHH+  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGNGLHHMVWEIVDNAVDEALSGFGSQIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G L+V D GRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLSVEDQGRGMPTGMH--AMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F   G P++ LEK     ++K GT++TF PDP IF   
Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFEDGGKPVTTLEKIGSAPKSKTGTKVTFMPDPTIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   V    +  ++  +         F++  G++ +++   E+
Sbjct: 186 TDFKFNTIAERIKESAFLLKDVTLTLTDLRKEEDN-----HVAFHYENGVQDFVEYLNED 240

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++        E  G     VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 241 KETLTPV-LYFSGESDG---FQVEVAMQYNDGYSDNILSFVNNVRTKDGGTHETGLKTAI 296

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 297 TKAMNDYARKTGLLKEKDKNLEGSDYREGLSAVLSILVPEAHLQFEGQTKDKLGSPLARP 356

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451
            V++ + D    +L++N   A+ L+   I+  + R   RK R+ +R     K       G
Sbjct: 357 VVDSIVSDKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSG 416

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N+
Sbjct: 417 KLTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKANMSDILKNE 476

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 477 EINTMIYTIGAGVGADFSVEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +      LEE ++       + R+KGLGEM A Q
Sbjct: 537 VYIALPPLYKMSKGKGKKEEVAYAWTDSE----LEELRRTFGRGATLQRYKGLGEMNADQ 592

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I+     L   +  ++ LMG KA  R ++I++   F
Sbjct: 593 LWETTMNPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 641


>gi|86607821|ref|YP_476583.1| DNA gyrase subunit B [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556363|gb|ABD01320.1| DNA gyrase, B subunit [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 642

 Score =  602 bits (1551), Expect = e-170,   Method: Composition-based stats.
 Identities = 265/651 (40%), Positives = 379/651 (58%), Gaps = 25/651 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++NY A  I++LEGLE VR RPGMYIG T  K LHHL  EV+DN++DE +AGY N I++S
Sbjct: 2   TENYGAEQIQVLEGLEAVRKRPGMYIGSTGPKGLHHLVYEVVDNSVDEALAGYCNDIQIS 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +G ++V+DNGRGIPV+ HPK   +S L  +LT LHAGGKF    Y++SGGLHGVG+S
Sbjct: 62  LHPDGSVSVLDNGRGIPVDIHPK-TGQSALVTVLTVLHAGGKFGGGGYKVSGGLHGVGVS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK--KEKVRNKRGTRITFRPDPKIFGD 218
           VVNALS+ + VTV R+  ++ Q+F RG  +  L+   + K  N+RGT + F+PD  IF +
Sbjct: 121 VVNALSEWVEVTVWREGKVYFQRFERGAVVGSLKSEPQPKGSNRRGTEVRFKPDGLIFPE 180

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              FD A L    +  AYL+  +K  +S  +        P  E + + GG+K Y+     
Sbjct: 181 -REFDYAVLAARFRELAYLNAGLKITFSDLRR-----DPPHCETYQYAGGIKEYVAFINH 234

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE--ENPEITSYCNTILTDEGGTHESGLRV 336
            ++ I S+I   + E+ G     VE A+ WC       +  + N I T+EGGTH  GL+ 
Sbjct: 235 EKTPIHSDIIYIQGERDGV---EVEVALQWCSDVYTDTLIGFANNIRTNEGGTHLEGLKT 291

Query: 337 ALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           +LT  I   A      +    ++  +++      I+SV +  PEF GQTKTKL + + + 
Sbjct: 292 SLTLTINSQARKLNKLKDSDSNLAGENVREGLTAIVSVKVPNPEFEGQTKTKLGNTEVRG 351

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            V+  + +    YL  NP  A  +++  I+        R+ RE V RK+A+    LPGKL
Sbjct: 352 IVQTLVSEALTEYLEFNPNVARGIVDKAIQSFNAAEAARRARELVRRKSALESSTLPGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS      +E+++VEGDSAGGSAKQ R+R  QAVLPLRGKILN+  A   KI  N +I
Sbjct: 412 ADCSCRDPAESEVYLVEGDSAGGSAKQGRDRQFQAVLPLRGKILNIEKADPAKIYKNAEI 471

Query: 514 MDLVQALGCRTR-SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             ++ ALG   +  ++    LRY ++I+MTDADVDG+HI +LLLTFFY+    L+EQ ++
Sbjct: 472 QAMITALGLGVKGDEFDPSQLRYHRIILMTDADVDGSHIRTLLLTFFYRYQKALLEQGYV 531

Query: 573 FLISPPLFRITQG-TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           ++  PPL++I  G     Y + +  K +IL     +   K  I RFKGLGEM+  QL ET
Sbjct: 532 YIACPPLYKIEWGRNNVRYCYSDAEKDQILRGLPAN--AKYTIQRFKGLGEMMPEQLWET 589

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            M+   RTL ++ I   +    +       LMG     R +FI+  ++ +D
Sbjct: 590 TMNPATRTLKQITIEDAV----EADRIFTILMGDAVGPRREFIEAHSAHLD 636


>gi|319645607|ref|ZP_07999839.1| DNA topoisomerase 4 subunit B [Bacillus sp. BT1B_CT2]
 gi|317392493|gb|EFV73288.1| DNA topoisomerase 4 subunit B [Bacillus sp. BT1B_CT2]
          Length = 657

 Score =  601 bits (1550), Expect = e-170,   Method: Composition-based stats.
 Identities = 251/650 (38%), Positives = 363/650 (55%), Gaps = 34/650 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y+  SI++LEGLE VR RPGMYIG TD + LHHL  E++DN++DEV+AG+ + I V + 
Sbjct: 10  DYNDDSIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEVLAGHGDHIIVKIH 69

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V D GRG+P   H     K T EIILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 70  KDNSISVQDRGRGMPTGMHK--LGKPTPEIILTVLHAGGKFGQGGYKTSGGLHGVGASVV 127

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+ L VT+ R   ++ Q+F  G        K     K GT I F+PDP +F     F
Sbjct: 128 NALSEWLTVTIERDGNVYRQRFENGGKPVTSLDKIGTTKKTGTLIHFKPDPAMFSTTT-F 186

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L +  +  A+L   +K     +++  +       E F +  G++ ++    E +  
Sbjct: 187 NFETLSERLRESAFLLKGLKIELIDERDQTK-------ETFLYENGIEAFVAYLNEEKD- 238

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
             SE+ + + E  G     V++A  + +     I S+ N + T +GGTHESG + A+TR 
Sbjct: 239 ALSEVVSFEGEHNGI---EVDFAFQFNDGYSENILSFVNNVRTKDGGTHESGAKTAMTRA 295

Query: 342 IKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397
             +YA       ++  ++   D+      I+SV I E   +F GQTK KL + +A+  V+
Sbjct: 296 FNEYARKVALLKEKDKNLEGTDIREGLSAIVSVRIPEELLQFEGQTKGKLGTSEARSAVD 355

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLA 454
             + +   ++L +N   AT L++  I+ S+ R   RK RE  R    RK     L GKL 
Sbjct: 356 AIVSEQLAYFLEENRETATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLT 415

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
                     EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I 
Sbjct: 416 PAQSRNPSKNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIFKNEEIN 475

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++ A+G    + +  ED+ Y+KVIIMTDAD DGAHI  LLLTFFY+ M  LIE   +F+
Sbjct: 476 TIIHAIGGGVGADFDIEDINYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFI 535

Query: 575 ISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
             PPL+++++G   K +  YA  +E    +L++  K       I R+KGLGEM A QL E
Sbjct: 536 ALPPLYKVSKGSGKKEIIEYAWSDEEMDDVLKKVGK----GYTIQRYKGLGEMNADQLWE 591

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           T M+   RTL+RV+I+         +  +  LMG K + R K+I++  +F
Sbjct: 592 TTMNPESRTLVRVKIDD----AARVERRVTTLMGDKVEPRRKWIEKNVAF 637


>gi|312867767|ref|ZP_07727973.1| DNA topoisomerase IV, B subunit [Streptococcus parasanguinis F0405]
 gi|311096830|gb|EFQ55068.1| DNA topoisomerase IV, B subunit [Streptococcus parasanguinis F0405]
          Length = 649

 Score =  601 bits (1550), Expect = e-170,   Method: Composition-based stats.
 Identities = 237/653 (36%), Positives = 364/653 (55%), Gaps = 34/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHH+  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGNGLHHMVWEIVDNAVDEALSGFGSQIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G L+V D GRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLSVEDQGRGMPTGMH--AMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F   G P++ LEK     ++K GT++TF PDP IF   
Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFEDGGKPVTTLEKIGSAPKSKTGTKVTFMPDPTIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   V    +  ++  +         F++  G++ +++   E+
Sbjct: 186 TDFKFNTIAERIKESAFLLKDVTLTLTDLRKEEDN-----HVSFHYENGVQDFVEYLNED 240

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++        E  G     VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 241 KETLTPV-LYFSGESDG---FQVEVAMQYNDGYSDNILSFVNNVRTKDGGTHETGLKTAI 296

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 297 TKAMNDYARKTGLLKEKDKNLEGSDYREGLSAVLSILVPEAHLQFEGQTKDKLGSPLARP 356

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451
            V++ + D    +L++N   A+ L+   I+  + R   RK R+ +R     K       G
Sbjct: 357 VVDSIVSDKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSG 416

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N+
Sbjct: 417 KLTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKANMSDILKNE 476

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 477 EINTMIYTIGAGVGADFSVEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +      LEE ++       + R+KGLGEM A Q
Sbjct: 537 VYIALPPLYKMSKGKGKKEEVAYAWTDSE----LEELRRTFGRGATLQRYKGLGEMNADQ 592

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I+     L   +  ++ LMG KA  R ++I++   F
Sbjct: 593 LWETTMNPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 641


>gi|203287878|ref|YP_002222893.1| DNA gyrase, subunit B [Borrelia recurrentis A1]
 gi|201085098|gb|ACH94672.1| DNA gyrase, subunit B [Borrelia recurrentis A1]
          Length = 639

 Score =  601 bits (1550), Expect = e-170,   Method: Composition-based stats.
 Identities = 239/647 (36%), Positives = 365/647 (56%), Gaps = 19/647 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y AS+I++L+GLE VR RPGMYIG      LHHL  E++DN++DE +AG+ + IEV ++
Sbjct: 7   SYVASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLVYEIVDNSIDEALAGFCDRIEVVIN 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  + V DNGRGIP + H +    S LE++LT LH+GGKF+  TY++SGGLHGVG+SVV
Sbjct: 67  SDNSIMVNDNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGVSVV 125

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L V V+R+  +F Q +SRGIP S +E    V    GT++TF  D +IF     +
Sbjct: 126 NALSSFLEVVVSREGKLFKQTYSRGIPTSEVEVVG-VSFTTGTKVTFFADSEIFETL-KY 183

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L +  +  A+L+ +++      +   EK+       FYF GG+K ++     N   
Sbjct: 184 DFETLSRRLRELAFLNDKIRISIEDRRLGEEKFLE-----FYFEGGIKAFVDYITNNNKN 238

Query: 283 ISSEIFTGKTE-KKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
           I S  +  +           ++W   + +      S+ N I T EGGTH +G +  L + 
Sbjct: 239 IQSSPYFIEGVCNDVIVSVGLKWTEGYSDN---TLSFVNNINTKEGGTHVAGFKSGLLKA 295

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + +    ++   K   ++  DD       ++S+ + EP+F GQTK KL +   ++ VE  
Sbjct: 296 MSETFRDSKISKKDIPNLTLDDFKEGLTAVISIKVPEPQFEGQTKGKLGNSYIKKIVETI 355

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458
           + D     + +N +E   +L   I  +  R   RK R    +K+A   L LPGKLADC+ 
Sbjct: 356 VYDGLLRIINENFVEIDIILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCTS 415

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E++IVEGDSAGGSAK  R+R  QA+LPL GK+LNV     +K+  N +++ ++ 
Sbjct: 416 KNPAEREIYIVEGDSAGGSAKMGRDRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 475

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           +LG      +  E LRY K+IIM DADVDG+HI +LLLTFF++ M +LI+ KH+++  PP
Sbjct: 476 SLGAGVGKAFYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIDNKHVYIAMPP 535

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L++I    K  Y +D+  K+  L       + K+ + R+KGLGEM  +QL ET M+   R
Sbjct: 536 LYKIKHENKVHYFYDDFEKETFLGSIDVGKRNKVSLQRYKGLGEMNPTQLWETTMNPATR 595

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +  +EI+  +      +     LMG   + R +FI++ A  + ++ 
Sbjct: 596 KMKLIEIDDAI----QAEKIFVTLMGDDVEPRREFIEQNALDVVNLD 638


>gi|311068376|ref|YP_003973299.1| DNA topoisomerase IV subunit B [Bacillus atrophaeus 1942]
 gi|310868893|gb|ADP32368.1| DNA topoisomerase IV subunit B [Bacillus atrophaeus 1942]
          Length = 656

 Score =  601 bits (1550), Expect = e-170,   Method: Composition-based stats.
 Identities = 246/658 (37%), Positives = 363/658 (55%), Gaps = 34/658 (5%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            A +    +Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DEV+AG+ 
Sbjct: 1   MARKQQQFDYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEVLAGHG 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I V +  +  ++V D GRG+P   H     K T E+I T LHAGGKF    Y+ SGGL
Sbjct: 61  DHIIVKIHKDNSISVQDRGRGMPTGMHK--LGKPTPEVIFTVLHAGGKFGQGGYKTSGGL 118

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS+ L VT+ R   ++ Q+F  G        K     K GT   F+PDP 
Sbjct: 119 HGVGASVVNALSEWLTVTIERDGYVYKQRFENGGKPVTSLDKIGTTKKSGTLTHFKPDPA 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           +F     ++   L +  +  A+L   +K     ++   E       E FY+  G++ ++ 
Sbjct: 179 MFSVTT-YNFETLSERLRESAFLLKGLKIELIDERHQVE-------EVFYYENGIEAFVA 230

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              E +    SE+ + + E     +  V++A  + +     I S+ N + T +GGTHESG
Sbjct: 231 YLNEEKD-SLSEVVSFEGEHN---QIEVDFAFQFNDGYSENILSFVNNVRTKDGGTHESG 286

Query: 334 LRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVS 389
            + A+TR   +YA       ++  ++   D+      I+SV I E   +F GQTK KL +
Sbjct: 287 AKTAMTRAFNEYARKVSLLKEKDKNLEGTDIREGLSAIISVRIPEELLQFEGQTKGKLGT 346

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK--- 446
            +A+  V+  + +   ++L +N   AT L++  I+ S+ R   RK RE  R    RK   
Sbjct: 347 SEARSAVDAVISEQLAYFLEENRETATLLVKKAIKASQAREAARKAREEARSGKKRKKSE 406

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             L GKL           EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    
Sbjct: 407 ATLSGKLTPAGSRNPAKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLAD 466

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           I  N++I  ++ A+G    + +  ED+ Y+K++IMTDAD DGAHI  LLLTFFY+ M  L
Sbjct: 467 IFKNEEINTIIHAIGGGVGADFEVEDINYDKIVIMTDADTDGAHIQVLLLTFFYRYMKPL 526

Query: 567 IEQKHLFLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
           IE   +F+  PPL+++++G   K +  YA  +E    +L++  K       I R+KGLGE
Sbjct: 527 IEHGKVFIALPPLYKVSKGSGKKEIIEYAWSDEEMDDVLKKVGK----GYTIQRYKGLGE 582

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           M A QL ET M+   RTL+RV+I+         +  +  LMG K + R K+I++  +F
Sbjct: 583 MNADQLWETTMNPESRTLVRVKIDD----AARVERRVTTLMGDKVEPRRKWIEKNVAF 636


>gi|321401274|gb|ADW83048.1| DNA gyrase subunit B [Leptospira interrogans]
 gi|321401276|gb|ADW83049.1| DNA gyrase subunit B [Leptospira interrogans]
 gi|321401280|gb|ADW83051.1| DNA gyrase subunit B [Leptospira interrogans]
          Length = 639

 Score =  601 bits (1550), Expect = e-169,   Method: Composition-based stats.
 Identities = 242/653 (37%), Positives = 382/653 (58%), Gaps = 21/653 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
                +Y A  I+ILEGLE VR RPGMYIG  DE  LH +  EV+DN++DE +AG+   I
Sbjct: 2   SQEETSYSAGQIKILEGLEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           ++S+  +  + V DNGRGIPV+ HP     ST+E+++T LHAGGKF+N  Y++SGGLHGV
Sbjct: 62  KISILPDNIVEVKDNGRGIPVDIHP-DKKISTIEVVMTILHAGGKFENDAYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+ L V V ++  +++QK+ +G+P+S ++ +      RGT + F+PD  IF 
Sbjct: 121 GVSVVNALSEYLEVEVHQKGKVYTQKYEKGVPVSSVQIQGDSSE-RGTIVRFKPDATIFT 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F    L    +  A+L+  +       +   E     E   F F GG+ ++++   
Sbjct: 180 T-VDFQFDVLSARFRELAFLNKGLVLVVEDHRRGKENILRNE---FQFSGGIVSFVEHIN 235

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337
           EN+  +   I   + +       +++++  + E    I  + N I  + GGTH  G R A
Sbjct: 236 ENKHPMHKVIHFERNKDDVLAEISIQYSETYTE---NIFCFTNNINNNLGGTHLEGFRAA 292

Query: 338 LTRGIKKYAELT---QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           LTR +  + +       K    +  +D+      ++S+ I +P+F  QTK KLV+ + + 
Sbjct: 293 LTRTLNDFLKKDSTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKG 352

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            ++    +    +  +NP    K+LE  I  ++ R   RK R+   RKT +    LPGKL
Sbjct: 353 IMQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKL 412

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS+     +EL++VEGDSAGGSAKQ R+R+ QA+LPL+GKILNV  A  +KI ++++I
Sbjct: 413 ADCSEKDPAHSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSSEEI 472

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             LV ALG      ++  + +RY K++IMTDAD+DG+HI +LLLTFF++ M  +IE+ +L
Sbjct: 473 RVLVSALGTGIGEDEFNIDKIRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIERGYL 532

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL+ I  G  S Y + ++ K+++L+        K+ I R+KGLGEM   QL ET 
Sbjct: 533 YVAQPPLYLIKHGKNSTYVYSDKEKEELLKNIGAE---KVVIQRYKGLGEMNPEQLWETT 589

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           MD + R +L+V+++  +    + +++ N LMG +   R +FI+  A+ + ++ 
Sbjct: 590 MDPSNRVVLKVKLDDFV----EAEETFNILMGDEVQPRKQFIEVNAAKVANLD 638


>gi|24212705|ref|NP_710186.1| DNA gyrase subunit B [Leptospira interrogans serovar Lai str.
           56601]
 gi|45655919|ref|YP_000005.1| DNA gyrase subunit B [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|24193336|gb|AAN47204.1|AE011192_5 DNA gyrase subunit B [Leptospira interrogans serovar Lai str.
           56601]
 gi|45599152|gb|AAS68642.1| DNA gyrase subunit B [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|321401260|gb|ADW83041.1| DNA gyrase subunit B [Leptospira interrogans]
 gi|321401264|gb|ADW83043.1| DNA gyrase subunit B [Leptospira interrogans]
 gi|321401268|gb|ADW83045.1| DNA gyrase subunit B [Leptospira interrogans]
 gi|321401272|gb|ADW83047.1| DNA gyrase subunit B [Leptospira interrogans]
 gi|321401278|gb|ADW83050.1| DNA gyrase subunit B [Leptospira interrogans]
          Length = 639

 Score =  601 bits (1550), Expect = e-169,   Method: Composition-based stats.
 Identities = 242/653 (37%), Positives = 382/653 (58%), Gaps = 21/653 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
                +Y A  I+ILEGLE VR RPGMYIG  DE  LH +  EV+DN++DE +AG+   I
Sbjct: 2   SQEETSYSAGQIKILEGLEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           ++S+  +  + V DNGRGIPV+ HP     ST+E+++T LHAGGKF+N  Y++SGGLHGV
Sbjct: 62  KISILPDNIVEVKDNGRGIPVDIHP-DKKISTIEVVMTILHAGGKFENDAYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+ L V V ++  +++QK+ +G+P+S ++ +      RGT + F+PD  IF 
Sbjct: 121 GVSVVNALSEYLEVEVHQKGKVYTQKYEKGVPVSSVQIQGDSSE-RGTIVRFKPDATIFT 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F    L    +  A+L+  +       +   E     E   F F GG+ ++++   
Sbjct: 180 T-VDFQFDVLSARFRELAFLNKGLVLVVEDHRRGKENILRNE---FQFSGGIVSFVEHIN 235

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337
           EN+  +   I   + +       +++++  + E    I  + N I  + GGTH  G R A
Sbjct: 236 ENKHPMHKVIHFERNKDDVLAEISIQYSETYTE---NIFCFTNNINNNLGGTHLEGFRAA 292

Query: 338 LTRGIKKYAELT---QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           LTR +  + +       K    +  +D+      ++S+ I +P+F  QTK KLV+ + + 
Sbjct: 293 LTRTLNDFLKKDSTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKG 352

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            ++    +    +  +NP    K+LE  I  ++ R   RK R+   RKT +    LPGKL
Sbjct: 353 IMQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKL 412

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS+     +EL++VEGDSAGGSAKQ R+R+ QA+LPL+GKILNV  A  +KI ++++I
Sbjct: 413 ADCSEKDPAHSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSSEEI 472

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             LV ALG      ++  + +RY K++IMTDAD+DG+HI +LLLTFF++ M  +IE+ +L
Sbjct: 473 RVLVSALGTGIGEDEFNIDKIRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIERGYL 532

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL+ I  G  S Y + ++ K+++L+        K+ I R+KGLGEM   QL ET 
Sbjct: 533 YVAQPPLYLIKHGKNSTYVYSDKEKEELLKNIGAE---KVVIQRYKGLGEMNPEQLWETT 589

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           MD + R +L+V+++  +    + +++ N LMG +   R +FI+  A+ + ++ 
Sbjct: 590 MDPSNRVVLKVKLDDFV----EAEETFNVLMGDEVQPRKQFIEVNAAKVANLD 638


>gi|149203080|ref|ZP_01880051.1| DNA topoisomerase IV subunit B [Roseovarius sp. TM1035]
 gi|149143626|gb|EDM31662.1| DNA topoisomerase IV subunit B [Roseovarius sp. TM1035]
          Length = 651

 Score =  601 bits (1550), Expect = e-169,   Method: Composition-based stats.
 Identities = 342/652 (52%), Positives = 446/652 (68%), Gaps = 10/652 (1%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           + +   +YDASSI++LE +E VR+RPGMYIGG D++ALHH+ +E+IDN+MDE +AG+A  
Sbjct: 6   SPTPKSDYDASSIQVLEDMEHVRLRPGMYIGGKDDRALHHMVAEIIDNSMDEAVAGHATW 65

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV L  NG ++V DNGRGIPV+ HPK P KS LEII  TL+AGGKF   +Y+ SGGLHG
Sbjct: 66  IEVELHANGHVSVRDNGRGIPVDPHPKDPKKSALEIIFCTLNAGGKFSGDSYQTSGGLHG 125

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALSD L V VAR   ++  +FSRG P +PL K     N+RGT +TF PDP+IF
Sbjct: 126 VGSSVVNALSDHLRVEVARNRELYMMEFSRGTPQAPLAKIGAAPNRRGTSVTFHPDPEIF 185

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
           G       ARL KM +SKAYL   V+  W  +    +    P++  F FPGGL  YL   
Sbjct: 186 GS-LTLKPARLFKMARSKAYLFSGVEIRWKTEISDGD---TPQEATFKFPGGLADYLGEA 241

Query: 277 LENRSLISSEIFTGKTEKKGTHR--GTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESG 333
           L   +  +   F G  + +  +   G VEWAI W    +  I SYCNT+ T EGGTHE+G
Sbjct: 242 LGGATTYAERPFAGTVDFRDKYNVPGKVEWAINWTPARDGFIQSYCNTVPTPEGGTHEAG 301

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
              A+ +GIK Y EL+ N++A  I  +DL+     ++S FIREPEF GQTK +L + DA 
Sbjct: 302 FWAAILKGIKAYGELSNNRKAAQITREDLLAGGCALVSCFIREPEFVGQTKDRLATTDAA 361

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
           R VE A+RD FD++L  +   A  +L++++ R+EERLRRR+++E  RKTA +KLRLPGKL
Sbjct: 362 RMVEGAVRDHFDNWLAADTKSAGAILDFLVLRAEERLRRRQEKETQRKTATKKLRLPGKL 421

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
            DCS +   GTELFIVEGDSAGGSAK AR+R  QA+LPLRGKILNV  A S K+ +NQ+I
Sbjct: 422 VDCSSSTRDGTELFIVEGDSAGGSAKMARDRKTQALLPLRGKILNVLGAASSKLGSNQEI 481

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            DL QALG    S++  +DLRY+K+IIMTDADVDGAHIA+LL+TFF+ +M  +I+  HL+
Sbjct: 482 SDLTQALGVSLGSKFNLDDLRYDKIIIMTDADVDGAHIAALLMTFFFTQMRPMIDAGHLY 541

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           L  PPL+R+TQG+K VY  DE  +   LE+    GKGKI++SRFKGLGEM A  LKET M
Sbjct: 542 LACPPLYRLTQGSKRVYCLDEAERDLWLEK-GLGGKGKIDVSRFKGLGEMDAKDLKETTM 600

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D   R L+RV I++D      T D + +LMG K + RF++I E A F++++ 
Sbjct: 601 DPGSRKLIRVTIDEDE--PGQTGDLVERLMGKKPELRFQYISENARFVEELD 650


>gi|300711735|ref|YP_003737549.1| DNA topoisomerase II subunit B (DNA gyrase) [Halalkalicoccus
           jeotgali B3]
 gi|299125418|gb|ADJ15757.1| DNA topoisomerase II subunit B (DNA gyrase) [Halalkalicoccus
           jeotgali B3]
          Length = 635

 Score =  601 bits (1550), Expect = e-169,   Method: Composition-based stats.
 Identities = 247/650 (38%), Positives = 376/650 (57%), Gaps = 26/650 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y A  I++LEGLE VR RP MYIG TD + LHHL  EV+DNA+DE +AGY + I V++
Sbjct: 5   SEYGAGQIQVLEGLEAVRTRPAMYIGSTDSRGLHHLVYEVVDNAIDEALAGYCDTIGVTI 64

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G ++V D+GRGIPV+ H ++ ++  +E+I+T LHAGGKFD+ +Y++SGGLHGVG+SV
Sbjct: 65  HEDGSVSVADDGRGIPVDTHAEY-DRPAVEVIMTVLHAGGKFDSKSYQVSGGLHGVGVSV 123

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGDK 219
           VNALS+ L V + R   ++  +F  G P   +E+        + GT + F PD  IF D+
Sbjct: 124 VNALSERLEVEIRRDGAVWHHRFDHGAPEGDIERVRDLEAEEETGTTVRFWPDDGIFEDR 183

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  + L    +  A+L+  V+   + +++  E         F + GG++ +++   E 
Sbjct: 184 -EFVVSTLENRIRELAFLNPGVEITLADERDETE-------STFQYDGGIREFVEYLNET 235

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHESGLRVAL 338
           R+ +  ++     E++      VE A+   +E    I ++ N I T EGGTH +G + AL
Sbjct: 236 RTPLHEDVLYLDDEERNIQ---VEVAMQATDELQGSIHAFANNINTREGGTHLTGFKTAL 292

Query: 339 TRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  YA        I  ++  +D+      ++S+   +P+F GQTKTKL + + +  V
Sbjct: 293 TRVVNDYANGEGLLDEIDENLRGEDIREGLTAVISIKHPDPQFEGQTKTKLGNSEVRGIV 352

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
           E+A+ +    Y  ++P  A  ++   +E ++ R   ++  E   RK+A+    LPGKLAD
Sbjct: 353 ESAVHEGLGTYFEEHPDTAQAVVRKAVEAAKARKAAKQAEELTRRKSALESTALPGKLAD 412

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C     +  ELF+VEGDSAGGSAKQ RNR  QA+LPL+GKILNV     ++I  N +I D
Sbjct: 413 CQTRDPNEAELFVVEGDSAGGSAKQGRNRKFQAILPLKGKILNVEKHRLDRILENNEIRD 472

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           L+ A+G     ++  ++ RY++++IMTDADVDGAHI +LLLT FY+ M  LIE  +++  
Sbjct: 473 LITAVGAGVGEEFDIDEARYKRIVIMTDADVDGAHIRTLLLTLFYRHMRPLIEAGYVYAA 532

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+R+  G ++  A  E  ++ I++E+    +    I RFKGLGEM   QL ET M+ 
Sbjct: 533 QPPLYRLRYGGETREAMAEAEREAIIDEYGAPDR----IQRFKGLGEMNPDQLWETTMNP 588

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           + R L RV +              + LMG   + R +FIQE A   + V 
Sbjct: 589 DNRVLKRVTVED----AAAADRMFSVLMGDAVEPRKQFIQEHAKEAEWVD 634


>gi|307566039|ref|ZP_07628497.1| DNA gyrase, B subunit [Prevotella amnii CRIS 21A-A]
 gi|307345227|gb|EFN90606.1| DNA gyrase, B subunit [Prevotella amnii CRIS 21A-A]
          Length = 656

 Score =  601 bits (1550), Expect = e-169,   Method: Composition-based stats.
 Identities = 268/667 (40%), Positives = 384/667 (57%), Gaps = 27/667 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
             NQ   +NY AS+I++LEGLE VR RP MYIG   EK LHHL +E +DN++DE +AGY 
Sbjct: 2   TENQEHENNYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLINETVDNSIDEAMAGYC 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             IEV+++ +  +TV DNGRGIPV+ H K    S LE+++T LHAGGKFD  +Y++SGGL
Sbjct: 62  TDIEVTINADNSITVEDNGRGIPVDEHKKLHK-SALEVVMTVLHAGGKFDKGSYKVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+S VNALS  +   V R   I+ Q++ +G PL P++      +K GTR  F PD  
Sbjct: 121 HGVGVSCVNALSKHMLSQVFRDGKIYQQEYEKGKPLYPVKIVGDT-DKTGTRQQFWPDGT 179

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     F    + +  +  AYL+  +K   +  +  AE       E F+   GLK Y++
Sbjct: 180 IFTTTV-FQWDVVARRMRELAYLNAGIKITLTDLRPNAETGKT-RTEVFHAKDGLKEYVR 237

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               +R  +  ++   K+EK+G     +E AI +  +    I SY N I T EGGTH  G
Sbjct: 238 YVDRHRQHLFDDVIYLKSEKQGVP---IEVAIMYNTDYTENIHSYVNNINTIEGGTHLQG 294

Query: 334 LRVALTRGIKKYAEL------TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
            R ALTR +K YA+          K  I I  +D       ++SV + EP+F GQTKTKL
Sbjct: 295 FRTALTRSLKAYADNDAQISKQIEKAKIEITGEDFREGLTAVISVKVAEPQFEGQTKTKL 354

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRK 446
            + +    V+ A+ +    YL ++P EA  +   V+   +     R+ +  V RK  +  
Sbjct: 355 GNSEVSGAVQQAVGEALSAYLEEHPNEAKMICNKVVIAATARIAARKARESVQRKNVMTG 414

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADCS       E+F+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV      +
Sbjct: 415 GGLPGKLADCSNKDPKVCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQRHR 474

Query: 507 IRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           +   + +M+++Q++G R         +   E LRY+K+IIMTDADVDG+HI +L++T FY
Sbjct: 475 VFEAESVMNIIQSIGVRFGVEEDSDFEANIEKLRYDKIIIMTDADVDGSHIDTLIMTLFY 534

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK-IEISRFKG 619
           + M  +IEQ HLF+ +PPL++ T    S Y + E+ +Q  ++ +    +GK I   R+KG
Sbjct: 535 RYMPKVIEQGHLFIATPPLYKCTYKKVSEYCYTEQQRQAFIDRYGAGEEGKNIHTQRYKG 594

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679
           LGEM   QL ET MD +KR L +V I     +  D  +  + LMG   + R +FI++ A+
Sbjct: 595 LGEMNPEQLWETTMDPSKRLLKQVTIE----NAADADEVFSMLMGDDVEPRREFIEQNAN 650

Query: 680 FIDDVGT 686
           +  ++  
Sbjct: 651 YA-NIDA 656


>gi|312116002|ref|YP_004013598.1| DNA topoisomerase IV subunit beta [Rhodomicrobium vannielii ATCC
           17100]
 gi|311221131|gb|ADP72499.1| DNA topoisomerase IV, B subunit [Rhodomicrobium vannielii ATCC
           17100]
          Length = 691

 Score =  601 bits (1550), Expect = e-169,   Method: Composition-based stats.
 Identities = 372/689 (53%), Positives = 498/689 (72%), Gaps = 23/689 (3%)

Query: 5   SIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGM 64
           + DLF       +  +      G  P          +++Y A+ I +LEGLEPVR RPGM
Sbjct: 9   TRDLFGEGSEPEKPKAGGSAARGASP----------AESYTAADIEVLEGLEPVRRRPGM 58

Query: 65  YIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKF 124
           YIGGTDEKA+HHLF+EVIDNAMDE +AGYA+ IEV+LD +G L+V DNGRGIP++ HPK+
Sbjct: 59  YIGGTDEKAMHHLFAEVIDNAMDEAVAGYASFIEVALDADGTLSVADNGRGIPIDPHPKY 118

Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184
           P KS LE+I+TTLH+GGKF++  Y  SGGLHGVGISVVNAL+++L V VAR   ++ Q F
Sbjct: 119 PGKSALEVIMTTLHSGGKFNSKVYSTSGGLHGVGISVVNALAEKLEVEVARNGKLYRQTF 178

Query: 185 SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244
           +RG+P S LE    VRN+RGT + F PDP+IF ++A F   R+ KM ++KAYL G V+  
Sbjct: 179 ARGLPTSKLEDVGVVRNRRGTTVRFHPDPEIFKERATFRPVRIFKMARAKAYLFGGVEIR 238

Query: 245 WSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
           W+C  E+ +    +PEK  F+FPGGL+ +L +++E  + ++ ++F+G+ +K+G H G+VE
Sbjct: 239 WTCAPELLKGDADVPEKAVFHFPGGLRDFLSSRIEKLTTVTKDVFSGRVQKEGGH-GSVE 297

Query: 304 WAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDL 362
           WAIAW  +++  + SYCNT+ T EGGTHE+GLR ALT+ ++ Y ELT NKRA  + +DD+
Sbjct: 298 WAIAWIADDDGFMQSYCNTVPTPEGGTHEAGLRAALTKSLRAYGELTNNKRAAQVTADDV 357

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
            +++  +LSVF REPEF GQTK +L S +A R VEN ++D FDH+L  +P +A  LLE+V
Sbjct: 358 FVASGAMLSVFFREPEFQGQTKDRLSSAEAARIVENTVKDAFDHWLTASPQQANGLLEFV 417

Query: 423 IERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           IER+EERLR+R+++E  R+ A R+LRLPGKLADCS+N    TE+FIVEGDSAGGSAKQAR
Sbjct: 418 IERAEERLRKRREKETQRQKATRRLRLPGKLADCSKNAKDDTEIFIVEGDSAGGSAKQAR 477

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           +R+ QA+LPLRGKILNVASA  +K+  NQ + DL  ALGC T   Y + DLRY++VIIMT
Sbjct: 478 DRATQAILPLRGKILNVASASRDKLAQNQLLSDLTLALGCGTGKHYIDTDLRYDRVIIMT 537

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILE 602
           DADVDGAHIASLL+TFFY++M DLI   HLFL  PPL+R++QG K+ YA D+ H  + L+
Sbjct: 538 DADVDGAHIASLLITFFYRQMPDLIRNGHLFLAVPPLYRLSQGGKTAYARDDAHLAE-LK 596

Query: 603 EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEIN---------KDLNSLK 653
               +G+GK+E+SRFKGLGEM+ +QLKET MD  KR +LRVEI             +   
Sbjct: 597 RTVFNGRGKLEVSRFKGLGEMMPAQLKETTMDRKKRMMLRVEIAGRGGDLNGVDTKSEET 656

Query: 654 DTQDSINKLMGTKADERFKFIQERASFID 682
              + + +LMG K + RF+FIQERA+F +
Sbjct: 657 AAAEVVEQLMGNKPEARFRFIQERAAFAE 685


>gi|116326860|ref|YP_796580.1| DNA gyrase subunit B [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116119604|gb|ABJ77647.1| DNA gyrase subunit B [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
          Length = 641

 Score =  601 bits (1550), Expect = e-169,   Method: Composition-based stats.
 Identities = 251/653 (38%), Positives = 385/653 (58%), Gaps = 19/653 (2%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
                +Y A  I+ILEGLE VR RPGMYIG  DE  LH +  EV+DN++DE +AG+   I
Sbjct: 2   SQKETSYSAGQIKILEGLEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            +S+  N  + V DNGRGIPV+ HP     ST+E+++T LHAGGKF+N  Y++SGGLHGV
Sbjct: 62  RISILPNNIIEVKDNGRGIPVDIHP-DKKISTIEVVMTILHAGGKFENDAYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+ L V V ++  I++QK+ +GIP+SP+E K      RGT + F+PD  IF 
Sbjct: 121 GVSVVNALSEYLEVEVHQKGKIYTQKYEKGIPVSPVEIKGDSSE-RGTIVRFKPDATIFT 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F    L    +  A+L+  +       +  AE   +   E F F GG+ ++++   
Sbjct: 180 T-VDFQFDILSARFRELAFLNKGLVLIVEDRRRGAEGENLLRNE-FQFSGGIVSFVEHIN 237

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337
           EN+  +   I   + +       +++++  + E    I  + N I  + GGTH  G R A
Sbjct: 238 ENKHPMHKVIHFERNKDDVLAEISIQYSETYTE---NIFCFTNNINNNLGGTHLEGFRAA 294

Query: 338 LTRGIKKYAELT---QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           LTR +  + +       K    +  +D+      ++S+ I +P+F  QTK KLV+ + + 
Sbjct: 295 LTRTLNDFLKKDTTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKG 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            ++    +    +  +NP    K+LE  I  ++ R   RK R+   RKT +    LPGKL
Sbjct: 355 IMQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKL 414

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS+     +EL++VEGDSAGGSAKQ R+R+ QA+LPL+GKILNV  A  +KI ++++I
Sbjct: 415 ADCSEKDPAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSSEEI 474

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             LV ALG      ++    +RY K++IMTDAD+DG+HI +LLLTFF++ M  +IE+ +L
Sbjct: 475 RILVSALGTGIGEDEFNINKIRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIERGYL 534

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL+ I  G  S YA+ ++ K+++L+     G  K+ I R+KGLGEM   QL ET 
Sbjct: 535 YVAQPPLYLIKHGKNSTYAYSDKEKEELLKNV---GTEKVVIQRYKGLGEMNPEQLWETT 591

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           MD + R +L+V+++  +    + +++ N LMG +   R +FI+  A+ + ++ 
Sbjct: 592 MDPSNRVVLKVKLDDFV----EAEETFNILMGDEVQPRKQFIEINAAKVANLD 640


>gi|322385201|ref|ZP_08058848.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           cristatus ATCC 51100]
 gi|321270825|gb|EFX53738.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           cristatus ATCC 51100]
          Length = 649

 Score =  601 bits (1550), Expect = e-169,   Method: Composition-based stats.
 Identities = 256/658 (38%), Positives = 378/658 (57%), Gaps = 24/658 (3%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +        +  YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +A
Sbjct: 2   TEEKQQDIQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+A  I+V ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++S
Sbjct: 62  GFATHIQVFIEKDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVS 120

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG SVVNALS +L V V +   I  Q++ RG  ++ LE   +  ++ GT + F P
Sbjct: 121 GGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEYRRGQVVADLEIIGET-DRTGTTVHFTP 179

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           DP+IF +   FD  +L K  Q  A+L+  ++   +  ++  E     + +++++ GG+ +
Sbjct: 180 DPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKRDGME-----QVKDYHYEGGIAS 234

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           Y+Q   EN+ +I         E       TVE A+ +       + S+ N I T EGGTH
Sbjct: 235 YVQYINENKDVIFETPIYTDGEMDDI---TVEVAMQYTTGYHETVMSFANNIHTHEGGTH 291

Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           E G R ALTR I  YA+  +  +    ++  +D+      ++SV    P+F GQTKTKL 
Sbjct: 292 EQGFRTALTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLG 351

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447
           + +  +       + F  +L++NP  A K++E  I  S+ R+  ++ RE   +K+ +   
Sbjct: 352 NSEVVKITNRLFSEAFSDFLLENPAVARKIVEKGILASKARIAAKRAREVTRKKSGLEIS 411

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADCS N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI
Sbjct: 412 NLPGKLADCSSNNPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKI 471

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N++I  L  A+G    + +     RY K++IMTDADVDGAHI +LLLT  Y+ M  ++
Sbjct: 472 LANEEIRSLFTAMGTGFGADFDVSKARYHKLVIMTDADVDGAHIRTLLLTLIYRYMKPVL 531

Query: 568 EQKHLFLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGE 622
           E  ++++  PP++ +  G++   Y       EE  Q  LE +   G+ K  I R+KGLGE
Sbjct: 532 EAGYVYIAQPPIYGVKVGSEVKEYIQPGANQEEELQAALEHYS-EGRSKPTIQRYKGLGE 590

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           M   QL ET M+   R + RV ++       +     + LMG + + R  FI++ A +
Sbjct: 591 MDDHQLWETTMNPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRRDFIEKNAVY 644


>gi|24753767|gb|AAN64015.1|AF434658_12 DNA gyrase subunit B [Leptospira interrogans]
 gi|321401258|gb|ADW83040.1| DNA gyrase subunit B [Leptospira interrogans]
 gi|321401262|gb|ADW83042.1| DNA gyrase subunit B [Leptospira interrogans]
 gi|321401266|gb|ADW83044.1| DNA gyrase subunit B [Leptospira interrogans]
 gi|321401270|gb|ADW83046.1| DNA gyrase subunit B [Leptospira interrogans]
          Length = 639

 Score =  601 bits (1550), Expect = e-169,   Method: Composition-based stats.
 Identities = 244/653 (37%), Positives = 382/653 (58%), Gaps = 21/653 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
                +Y A  I+ILEGLE VR RPGMYIG  DE  LH +  EV+DN++DE +AG+   I
Sbjct: 2   SQEETSYSAGQIKILEGLEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           ++S+  +  + V DNGRGIPV+ HP     ST+E+++T LHAGGKF+N  Y++SGGLHGV
Sbjct: 62  KISILPDNIVEVKDNGRGIPVDIHP-DKKISTIEVVMTILHAGGKFENDAYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+ L V V ++  +++QK+ RGIP+S ++ +      RGT + F+PD  IF 
Sbjct: 121 GVSVVNALSEYLEVEVHQKGKVYTQKYERGIPVSSVQIQGDSSE-RGTIVRFKPDATIFT 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F    L    +  A+L+  +       +   E     E   F F GG+ ++++   
Sbjct: 180 T-VDFQFDVLSARFRELAFLNKGLVLVVEDHRRGKENILRNE---FQFSGGIVSFVEHIN 235

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337
           EN+  +   I   + +       +++++  + E    I  + N I  + GGTH  G R A
Sbjct: 236 ENKHPMHKVIHFERNKDDVLAEISIQYSETYTE---NIFCFTNNINNNLGGTHLEGFRAA 292

Query: 338 LTRGIKKYAELT---QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           LTR +  + +       K    +  +D+      ++S+ I +P+F  QTK KLV+ + + 
Sbjct: 293 LTRTLNDFLKKDSTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKG 352

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            ++    +    +  +NP    K+LE  I  ++ R   RK R+   RKT +    LPGKL
Sbjct: 353 IMQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKL 412

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS+     +EL++VEGDSAGGSAKQ R+R+ QA+LPL+GKILNV  A  +KI ++++I
Sbjct: 413 ADCSEKDPAHSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSSEEI 472

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             LV ALG      ++  + +RY K++IMTDAD+DG+HI +LLLTFF++ M  +IE+ +L
Sbjct: 473 RVLVSALGTGIGEDEFNIDKIRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIERGYL 532

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL+ I  G  S Y + ++ K+++L+        K+ I R+KGLGEM   QL ET 
Sbjct: 533 YVAQPPLYLIKHGKNSTYVYSDKEKEELLKNIGAE---KVVIQRYKGLGEMNPEQLWETT 589

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           MD + R +L+V+++  +    + +++ N LMG +   R +FI+  A+ + ++ 
Sbjct: 590 MDPSNRVVLKVKLDDFV----EAEETFNILMGDEVQPRKQFIEVNAAKVANLD 638


>gi|296331026|ref|ZP_06873501.1| DNA topoisomerase IV subunit B [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305674543|ref|YP_003866215.1| DNA topoisomerase IV subunit B [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296152031|gb|EFG92905.1| DNA topoisomerase IV subunit B [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305412787|gb|ADM37906.1| DNA topoisomerase IV subunit B [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 655

 Score =  601 bits (1550), Expect = e-169,   Method: Composition-based stats.
 Identities = 250/651 (38%), Positives = 369/651 (56%), Gaps = 36/651 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DEV+AGY + I V + 
Sbjct: 8   DYNEDAIQVLEGLEAVRKRPGMYIGSTDARGLHHLVYEIVDNSVDEVLAGYGDHIIVKIH 67

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V D GRG+P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 68  KDNSISVQDRGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 125

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L VT+ R   ++ Q+F  G  P++ LEK  K +   GT   F+PDP +F     
Sbjct: 126 NALSEWLTVTIERDGFVYQQRFENGGKPVTSLEKIGKTKK-TGTLTHFKPDPTMFSTTT- 183

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L +  +  A+L   +K     ++         ++E FY+  G++ ++    E + 
Sbjct: 184 YNFETLSERLRESAFLLKGLKIELIDER-------NDQQEIFYYENGIEAFVAYLNEEKD 236

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
              SE+ + + E    H   V++A  + +     I S+ N + T +GGTHESG + A+TR
Sbjct: 237 -ALSEVVSFEGE---HHSIEVDFAFQFNDGYSENILSFVNNVRTKDGGTHESGAKTAMTR 292

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA       ++  ++   D+      I+SV I E   +F GQTK KL + +A+  V
Sbjct: 293 AFNEYARKVALLKEKDKNLEGTDIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAV 352

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKL 453
           +  + +   ++L +N   AT L++  I+ S+ R   RK RE  R    RK     L GKL
Sbjct: 353 DAVVSEQLAYFLEENRDTATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKL 412

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I
Sbjct: 413 TPAGSRNPAKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 472

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A+G    + +  +D+ Y+K+IIMTDAD DGAHI  LLLTFFY+ M  LIE   +F
Sbjct: 473 NTIIHAIGGGVGADFSIDDINYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVF 532

Query: 574 LISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G   K +  YA  +E    +L++  K       I R+KGLGEM A QL 
Sbjct: 533 IALPPLYKVSKGSGKKEIIEYAWSDEEMDDVLKKVGK----GYTIQRYKGLGEMNADQLW 588

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV+I+         +  +  LMG K + R K+I++  +F
Sbjct: 589 ETTMNPESRTLVRVKIDD----AARVERRVTTLMGDKVEPRRKWIEKNVAF 635


>gi|227500982|ref|ZP_03931031.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus tetradius ATCC
           35098]
 gi|227216755|gb|EEI82153.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus tetradius ATCC
           35098]
          Length = 641

 Score =  601 bits (1550), Expect = e-169,   Method: Composition-based stats.
 Identities = 264/654 (40%), Positives = 389/654 (59%), Gaps = 23/654 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
            N    +NYDA +IR+LEGLEPVR+RPGMYIG T ++ LHHL  EV+DN++DE +AG  +
Sbjct: 6   RNSMQDNNYDAGNIRVLEGLEPVRLRPGMYIGSTSQRGLHHLVYEVVDNSVDEALAGRCD 65

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I+V++D +  ++V D+G GIPV+ HP   +KSTLE +LT LHAGGKFD+S Y++SGGLH
Sbjct: 66  YIKVTIDKDNVVSVEDDGSGIPVKEHP-TTHKSTLETVLTVLHAGGKFDDSAYKVSGGLH 124

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS+ L   V R   I+  +F+RG     +E         GT+ITF+ D +I
Sbjct: 125 GVGVSVVNALSEYLIAEVKRDGHIYKMEFARGEVTKDIEVIGDTVE-TGTKITFKADGEI 183

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     +D   L    +  A+L+  V+  +  ++E  +         F F GG+  ++  
Sbjct: 184 FDTTI-YDRTILENRFREMAFLNKGVEIQFEDEREDFKTS-------FKFEGGISEFVAY 235

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              N+  I   I      ++ T    VE+A  + +     I SY N I T EGG+H +GL
Sbjct: 236 LNRNKDPIMEMIPNFDGFQEDT---EVEFAFQYTDAYSENILSYANNIQTPEGGSHLAGL 292

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R +LTR +  YA           ++  +D+      I+SV I +P+F GQTK+KL + + 
Sbjct: 293 RSSLTRTVNDYARKYNFLKDNEDNLQGEDIREGITAIISVKITDPQFEGQTKSKLGNSEV 352

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
           +  V+  + +   ++L +NP  A  +++  +     R   RK R+   +++ +    LPG
Sbjct: 353 RGAVDTFISEHLANFLEENPKPAKAIIDKALASRRAREAARKARDLTRKRSILDSATLPG 412

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC        E+FIVEG+SAGGSAK  R+   QA+LPLRGKI+NV  A  +++ N++
Sbjct: 413 KLADCQSTDIGENEIFIVEGNSAGGSAKGGRDNRIQAILPLRGKIMNVEKAHLDRVLNSE 472

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I +++ A G     ++  E LRY K+IIMTDADVDGAHI +LLLTFFY+ M DLI++ H
Sbjct: 473 EIKNMITAFGTGIGKEFDLEKLRYGKIIIMTDADVDGAHIRTLLLTFFYRYMKDLIDKGH 532

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPL+RI+ G K  Y + ++ + K+++E    G    +I+R+KGLGEM A QL ET
Sbjct: 533 VYVALPPLYRISVGKKERYVYSDDERDKVIKEL---GVDNYKINRYKGLGEMNAEQLWET 589

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD ++R LLRV    +      T D+   LMG K + R  FIQE A ++ D+ 
Sbjct: 590 TMDPDRRVLLRVV---EDMESTTTDDTFALLMGEKVEPRRNFIQENAKYVTDID 640


>gi|228477165|ref|ZP_04061803.1| DNA gyrase, B subunit [Streptococcus salivarius SK126]
 gi|228251184|gb|EEK10355.1| DNA gyrase, B subunit [Streptococcus salivarius SK126]
          Length = 650

 Score =  601 bits (1550), Expect = e-169,   Method: Composition-based stats.
 Identities = 257/651 (39%), Positives = 379/651 (58%), Gaps = 22/651 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +  +  YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A  I
Sbjct: 9   EEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFATHI 68

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGV
Sbjct: 69  QVFIEPDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS +L V V +   I  Q++ RG+ ++ L    +     GT + F PDP+IF 
Sbjct: 128 GSSVVNALSTQLDVKVYKNGHIHFQEYKRGVVVADLAVIGETEKH-GTTVHFTPDPEIFQ 186

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   FD  +L K  Q  A+L+  ++   +  +E  +     +++ +++ GG+ +Y++   
Sbjct: 187 ETTEFDFGKLAKRIQELAFLNKGLRISITDKREGLK-----QEKHYHYEGGITSYVKYIN 241

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           EN+ +I  E      E  G    +VE A+ +       + S+ N I T EGGTHE G R 
Sbjct: 242 ENKDVIFDEPIYTDGEMDGI---SVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRT 298

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA   +   ++  ++  DD+      I+SV    P+F GQTKTKL + +  +
Sbjct: 299 ALTRVINDYARQNKILKEKDDNLTGDDVREGLTAIISVKHPNPQFEGQTKTKLGNSEVVK 358

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
                  +    +L++NP  A K++E  I  S+ R+  ++ RE   +K+ +    LPGKL
Sbjct: 359 ITNRLFSEALSRFLLENPAIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS N A   ELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I
Sbjct: 419 ADCSSNNAEMNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEI 478

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             L  A+G    +++     RY K++IMTDADVDGAHI +LLLT  Y+ M  ++E  +++
Sbjct: 479 RSLFTAMGTGFGAEFDVSKARYHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVY 538

Query: 574 LISPPLFRITQGTKSV-YAH---DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PP++ +  G++   Y     D+E K +   E    G+ K  + R+KGLGEM   QL 
Sbjct: 539 IAQPPIYGVKVGSEIKEYIQPGADQEDKLRAALENYSVGRSKPTVQRYKGLGEMDDHQLW 598

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET MD   R + RV ++       +     + LMG K + R +FI+E A +
Sbjct: 599 ETTMDPENRLMARVSVDD----AAEADKIFDMLMGDKVEPRREFIEENAVY 645


>gi|254387096|ref|ZP_05002370.1| DNA gyrase subunit B [Streptomyces sp. Mg1]
 gi|194345915|gb|EDX26881.1| DNA gyrase subunit B [Streptomyces sp. Mg1]
          Length = 686

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 255/684 (37%), Positives = 381/684 (55%), Gaps = 26/684 (3%)

Query: 21  EKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSE 80
                  E  +S A  N   + +YDAS+I++LEGL+ VR RPGMYIG T E+ LHHL  E
Sbjct: 9   ADSGNPNEKNESTAGENGEVTASYDASAIQVLEGLDAVRKRPGMYIGSTGERGLHHLVYE 68

Query: 81  VIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140
           V+DN++DE +AG+A+ I+V++  +G + VVDNGRGIPV+  P    K  +E++LT LHAG
Sbjct: 69  VVDNSVDEALAGHADTIDVTILADGGVRVVDNGRGIPVDIVP-SEGKPAVEVVLTVLHAG 127

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKF    Y +SGGLHGVG+SVVNALS ++ V V R    ++Q +  G P + L K E+  
Sbjct: 128 GKFGGGGYAVSGGLHGVGVSVVNALSTKVAVEVKRDGYRWTQDYKLGAPTAALAKNEET- 186

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK------ 254
           +  GT +TF  D  IF     +    L +  Q  A+L+  +    + ++E A+       
Sbjct: 187 DAHGTTVTFWADGDIFET-TEYSFETLSRRFQEMAFLNKGLTLTLTDERESAKATVGADD 245

Query: 255 ------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
                        ++Y+ GG+  +++     +  +          +      +VE A+ W
Sbjct: 246 PDADAVEPPARTVKYYYEGGIVDFVKYLNSRKGEMIHPTVIDVEAEDKERMLSVEIAMQW 305

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMIS 365
             +    + S+ NTI T EGGTHE G R ALT  + +YA   +   ++  ++  +D+   
Sbjct: 306 NSQYTEGVYSFANTIHTHEGGTHEEGFRAALTGLVNRYARDKKLLREKDDNLAGEDIREG 365

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              I+SV + EP+F GQTKTKL + +A+  V+  + +  + +  +NP+EA  ++   I+ 
Sbjct: 366 LTAIISVKLGEPQFEGQTKTKLGNTEAKTFVQKVVHEHLNDWFDRNPVEAADIIRKSIQA 425

Query: 426 SEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           +  R+  RK R++ R+   +    LPGKL+DC  N     E+FIVEGDSAGGSAK  RN 
Sbjct: 426 ATARVAARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNP 485

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA+LP+RGKILNV  A  +KI  N ++  L+ A G      +  E LRY K+I+M DA
Sbjct: 486 MYQAILPIRGKILNVEKARIDKILQNTEVQALISAFGTGVHEDFDIEKLRYHKIILMADA 545

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEE 603
           DVDG HI +LLLTF ++ M  L+E  H++L  PPL++I  G     YA+ +  +  ++E 
Sbjct: 546 DVDGQHINTLLLTFLFRFMRPLVEAGHVYLSRPPLYKIKWGRDDFEYAYSDRERDALVEL 605

Query: 604 FKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
            K++GK   +  I RFKGLGEM A +L+ T MD + R L +V ++          D  + 
Sbjct: 606 GKQNGKRIKEDSIQRFKGLGEMNAEELRITTMDVDHRVLGQVTLDD----AAQADDLFSV 661

Query: 662 LMGTKADERFKFIQERASFIDDVG 685
           LMG   + R  FIQ  A  +  + 
Sbjct: 662 LMGEDVEARRSFIQRNAKDVRFLD 685


>gi|205373638|ref|ZP_03226441.1| DNA topoisomerase IV subunit B [Bacillus coahuilensis m4-4]
          Length = 657

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 239/658 (36%), Positives = 366/658 (55%), Gaps = 34/658 (5%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            A +  +  Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AGY 
Sbjct: 1   MAKEKKTIEYNDDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGYG 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I+V++  +  ++V D GRG+P   H     K T E+ILT LHAGGKF    Y+ SGGL
Sbjct: 61  DHIKVTIHKDNSISVEDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGL 118

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS+ L VT+ R   ++ Q+F  G   +   ++       GT I F+PD  
Sbjct: 119 HGVGASVVNALSEWLVVTIKRDGIVYEQRFENGGKPASSLERMGSTKSTGTTIHFKPD-T 177

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
                  F+   L +  +  A+L   +K     ++         +++ F+F  G++ +++
Sbjct: 178 TMFSTTTFNYDTLSERLRESAFLLKGMKIEIIDER-------FDQRDVFHFETGIEAFVE 230

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              E++  +   + + + E+       VE+A  + +     I S+ N + T +GGTHE+G
Sbjct: 231 YLNEDKDSLHKVV-SLEGEQNSI---EVEFAFQFNDGFSENILSFVNNVRTKDGGTHEAG 286

Query: 334 LRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVS 389
            + A+TR   +YA       +R  ++   D+      I+SV I E   +F GQTK KL +
Sbjct: 287 AKTAMTRVFNEYARKVSILKERDKNLEGTDIREGLTAIISVRIPEELLQFEGQTKGKLGT 346

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK--- 446
            +A+  V+  + +   ++L +NP  +  L++  I+ ++ R   RK RE  R    RK   
Sbjct: 347 SEARSGVDQVVSEHLQYFLEENPDTSALLIKKAIKAAQAREAARKAREDARSGKKRKKSE 406

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             L GKL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + 
Sbjct: 407 TVLSGKLTPAQSRNPERNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKLQD 466

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           I  N++I  ++ A+G     ++  ED+ Y+K++IMTDAD DGAHI  LLLTFFY+ M  L
Sbjct: 467 IFKNEEINTIIHAIGAGVGPEFNVEDVNYDKIVIMTDADTDGAHIQVLLLTFFYRYMKPL 526

Query: 567 IEQKHLFLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
           IE   +F+  PPL+++++G   K V  YA  +E  +  +++  +       I R+KGLGE
Sbjct: 527 IEAGKVFIALPPLYKVSKGTGKKEVIEYAWTDEELKDAIKKIGR----GYIIQRYKGLGE 582

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           M A QL ET MD + RTL+RV I+         +  +  LMG K + R K+I+   +F
Sbjct: 583 MNADQLWETTMDPSTRTLIRVRIDD----AARAERRVTTLMGDKVEPRRKWIENNVAF 636


>gi|296876577|ref|ZP_06900627.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           parasanguinis ATCC 15912]
 gi|296432396|gb|EFH18193.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           parasanguinis ATCC 15912]
          Length = 649

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 238/653 (36%), Positives = 365/653 (55%), Gaps = 34/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHH+  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGNGLHHMVWEIVDNAVDEALSGFGSQIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G L+VVD GRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLSVVDQGRGMPTGMH--AMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F   G P++ LEK     ++K GT++TF PDP IF   
Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFEDGGKPVTTLEKIGTAPKSKTGTKVTFMPDPTIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   V    +  ++  +         F++  G++ +++   E+
Sbjct: 186 TDFKFNTIAERIKESAFLLKDVTLTLTDLRKEEDN-----HVAFHYENGVQDFVEYLNED 240

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++        E  G     VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 241 KETLTPV-LYFSGESDG---FQVEVAMQYNDGYSDNILSFVNNVRTKDGGTHETGLKTAI 296

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 297 TKAMNDYARKTGLLKEKDKNLEGSDYREGLSAVLSILVPEAHLQFEGQTKDKLGSPLARP 356

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451
            V++ + D    +L++N   A+ L+   I+  + R   RK R+ +R     K       G
Sbjct: 357 VVDSIVSDKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSG 416

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N+
Sbjct: 417 KLTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKANMSDILKNE 476

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 477 EINTMIYTIGAGVGADFSVEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +      LEE ++       + R+KGLGEM A Q
Sbjct: 537 VYIALPPLYKMSKGKGKKEEVAYAWTDSE----LEELRRTFGRGATLQRYKGLGEMNADQ 592

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I+     L   +  ++ LMG KA  R ++I++   F
Sbjct: 593 LWETTMNPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 641


>gi|296117467|ref|ZP_06836054.1| DNA topoisomerase IV subunit B [Gluconacetobacter hansenii ATCC
           23769]
 gi|295975988|gb|EFG82779.1| DNA topoisomerase IV subunit B [Gluconacetobacter hansenii ATCC
           23769]
          Length = 676

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 358/685 (52%), Positives = 468/685 (68%), Gaps = 15/685 (2%)

Query: 5   SIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGM 64
           + DLFS    Q +  + K +   + P +        S++YDAS+I +LEGLEPVR RPGM
Sbjct: 2   NDDLFSKPAAQRRTQARKSRAPADAPRA-------GSEDYDASAIEVLEGLEPVRRRPGM 54

Query: 65  YIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKF 124
           YIGGTDE A HHL SE++DNAMDE +AG+A++I+VSL+   +LT+ DNGRGIPV+ HPKF
Sbjct: 55  YIGGTDETAYHHLASEILDNAMDEAVAGHASVIDVSLEAGNWLTIRDNGRGIPVDPHPKF 114

Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184
           P +S LE+ILTTLHAGGKF    Y  SGGLHGVG SVVNALS  + V +AR  T++ Q +
Sbjct: 115 PQRSALEVILTTLHAGGKFSGKAYATSGGLHGVGSSVVNALSARMEVEIARDRTVWQQVY 174

Query: 185 SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244
            RGIPL+P+E+    +N+RGT+I F PDP+IFG    F   RL ++ +SKA+L   V   
Sbjct: 175 ERGIPLAPIEEVGPTQNRRGTQIRFVPDPQIFGKLH-FSPLRLYRLCRSKAFLFRGVTIR 233

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG---KTEKKGTHRGT 301
           WSCD  + +   +P +   +FPGGL   L+ +L N +L++          T   G   G 
Sbjct: 234 WSCDPALIKGTDVPAESVLHFPGGLADSLRDELGNTALLTDIWAGDADLPTAVDGESTGR 293

Query: 302 VEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISD 360
           +EWAIA+ E       SYCNTI T  GGTHE+G R ALT+G++ + E   NKRA +I +D
Sbjct: 294 MEWAIAFVERGTTGLSSYCNTIPTPNGGTHETGFRTALTKGLRNWGEQRSNKRAATINAD 353

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D+M      LSVFIR+P+F GQTK KL S +A R VE ALRD FDH+L  NP +A  LL 
Sbjct: 354 DIMGLISAKLSVFIRDPQFQGQTKEKLTSGEASRLVETALRDRFDHWLAGNPPQADNLLA 413

Query: 421 WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
            VIER+EERLRR++ ++  RK+A R+LRLPGKL DC++  A  TE+F+VEGDSAGGSAKQ
Sbjct: 414 VVIERAEERLRRKEMKDTPRKSATRRLRLPGKLTDCTRENAAETEIFLVEGDSAGGSAKQ 473

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           ARNR  QAVLPLRGKILNVASA +EK+R NQ++ DLV+ALGC     +    LRY ++II
Sbjct: 474 ARNRETQAVLPLRGKILNVASASAEKLRANQELRDLVEALGCGIGEHFDASRLRYGRIII 533

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKI 600
           MTDADVDGAHIASLL+TFFY+E+  LI   HL+L  PPL+R+TQG K+VYA ++  +++ 
Sbjct: 534 MTDADVDGAHIASLLMTFFYRELPALIRGGHLYLAQPPLYRLTQGGKTVYAMNDGDRERR 593

Query: 601 LEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660
           L+   K    K+E+SRFKGLGEM  S LK+T MD   RTLL+V     +     T++ + 
Sbjct: 594 LKREFK-PNAKVEVSRFKGLGEMPPSDLKQTTMDPKHRTLLKVVTP--IEDSNLTRERVE 650

Query: 661 KLMGTKADERFKFIQERASFIDDVG 685
            LMG K + RF+FIQE A  ++++ 
Sbjct: 651 HLMGRKPELRFQFIQEHARQVENLD 675


>gi|317128925|ref|YP_004095207.1| DNA topoisomerase IV subunit beta [Bacillus cellulosilyticus DSM
           2522]
 gi|315473873|gb|ADU30476.1| DNA topoisomerase IV, B subunit [Bacillus cellulosilyticus DSM
           2522]
          Length = 658

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 242/651 (37%), Positives = 363/651 (55%), Gaps = 33/651 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+  SI++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AGY + I V++ 
Sbjct: 8   EYNDDSIQVLEGLEAVRKRPGMYIGSTDHRGLHHLVFEIVDNSVDEALAGYGDEITVTIH 67

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V DNGRG P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 68  KDESISVKDNGRGYPTGMH--STGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 125

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L VT+ R   I+ Q+F  G  P++ LE     +   GT + F+PDP IF     
Sbjct: 126 NALSEWLEVTIHRDGKIYQQRFEDGGKPVTTLEVIGSTKK-TGTTVHFKPDPSIFSTTT- 183

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +    L +  +  A+L   +K      +   +       E F +  GL+ +++   E + 
Sbjct: 184 YQYDTLAERLREAAFLLKGLKIELVDARPNKDNDK----EVFQYDTGLEAFVEYLNEEKE 239

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
           ++   +    T+        V++A  + +     + S+ N + T +GGTHE G + A+TR
Sbjct: 240 VLHPVVSFQGTQDD----IEVDFAFQYNDAFTENMLSFVNNVRTKDGGTHELGAKTAVTR 295

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
            I ++    Q   +R  ++  +D+      I+SV + E   +F GQTK KL +  A+  V
Sbjct: 296 IINEHGRKLQLLKERDKNLDGNDIREGFTAIVSVRVPEDKLQFEGQTKGKLGTPVARSAV 355

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG---KL 453
           ++ + +    +L +NP  + +L++  ++ ++ R   RK RE  R     K +      KL
Sbjct: 356 DSIVSEKLSFFLEENPDLSNRLIKKAVKAAQAREAARKAREDARSGKKNKRKDAMLSGKL 415

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I
Sbjct: 416 TPAQSKNPKRNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIMKNEEI 475

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A+G    + ++ ED+ Y+KVIIMTDAD DGAHI  LLLTFFY+ M  L+E   ++
Sbjct: 476 RTIIYAIGGDVGADFQLEDINYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGRVY 535

Query: 574 LISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G+    K  YA DE+  Q+ +++  K       I R+KGLGEM A+QL 
Sbjct: 536 IALPPLYKVSKGSGKKEKIEYAWDEDGLQEAIQKIGK----GYTIQRYKGLGEMDATQLW 591

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET MD   RTL+RV+I+         +  +  LMG K + R K+I+    F
Sbjct: 592 ETTMDPETRTLVRVKIDDITR----AERRVATLMGDKVEPRRKWIERNVQF 638


>gi|312864604|ref|ZP_07724835.1| DNA gyrase, B subunit [Streptococcus downei F0415]
 gi|311099731|gb|EFQ57944.1| DNA gyrase, B subunit [Streptococcus downei F0415]
          Length = 650

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 258/655 (39%), Positives = 379/655 (57%), Gaps = 24/655 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              +  +  YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A
Sbjct: 6   KNREDLAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFA 65

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + IEV ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGL
Sbjct: 66  SHIEVFIEEDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGL 124

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS  L V V +   I  Q++ RG+ ++ L+      +K GT + F PDP+
Sbjct: 125 HGVGSSVVNALSTSLEVKVHKNGKIHFQEYKRGLVVADLKVIGDT-DKTGTTVHFTPDPE 183

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   FD  +L K  Q  A+L+  +K   S  +E  E     + + +++ GG+ +Y+ 
Sbjct: 184 IFTETTEFDFDKLAKRIQELAFLNKGLKISISDKREGKE-----QSQVYHYEGGIVSYVD 238

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              EN+ ++         E  G    +VE A+ +       + S+ N I T EGGTHE G
Sbjct: 239 YLNENKEVLFENPIYTDGEMDGI---SVEVAMQYTGTYHENVLSFANNIHTHEGGTHEQG 295

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR I  YA   +   ++  ++  +D+      I+SV    P+F GQTKTKL + +
Sbjct: 296 FRTALTRVINDYARQNKLLKEKDDNLSGEDVREGLTAIISVKHPNPQFEGQTKTKLGNSE 355

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
             +       + F  +L++NP  A K++E  I  S+ R+  ++ RE   +K+ +    LP
Sbjct: 356 VVKITNRLFSEAFSRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLP 415

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS N A   ELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N
Sbjct: 416 GKLADCSSNDASQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILAN 475

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
            +I  L  A+G    +++     RY+K++IMTDADVDG+HI +LLLT FY+ M  ++E  
Sbjct: 476 DEIRSLFTAMGTGFGAEFDVSKARYQKLVIMTDADVDGSHIRTLLLTLFYRYMRPVVEAG 535

Query: 571 HLFLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           ++++  PP++ +  G++   Y       E   Q+ LE +   G+ K  + R+KGLGEM  
Sbjct: 536 YVYIAQPPIYGVKVGSEVKEYIQPGADQETKLQEALERY-TQGRSKPSVQRYKGLGEMDD 594

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            QL +T MD   R + RV ++       +     + LMG +   R +FI+E A +
Sbjct: 595 HQLWKTTMDPEHRLMARVSVDD----AAEADKIFDMLMGDQVGPRREFIEENAVY 645


>gi|227543723|ref|ZP_03973772.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus reuteri CF48-3A]
 gi|300908788|ref|ZP_07126251.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
           reuteri SD2112]
 gi|154705554|gb|ABS84203.1| DNA gyrase B subunit [Lactobacillus reuteri]
 gi|227186291|gb|EEI66362.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus reuteri CF48-3A]
 gi|300894195|gb|EFK87553.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
           reuteri SD2112]
          Length = 649

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 249/662 (37%), Positives = 376/662 (56%), Gaps = 20/662 (3%)

Query: 29  IPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDE 88
             +         +  YDAS I++L+GL+ VR RPGMYIG T  + LHHL  E++DN +DE
Sbjct: 2   SNEQQKETKMELASEYDASQIQVLKGLDAVRKRPGMYIGSTSAQGLHHLVWEIVDNGIDE 61

Query: 89  VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148
            +AG+ + I V ++ +  +TV DNGRGIPV+   K   KS LE + T LHAGGKF    Y
Sbjct: 62  ALAGFCDEINVVVNPDNSITVKDNGRGIPVDTQ-KETGKSALETVFTVLHAGGKFGGGGY 120

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTR 206
           ++SGGLHGVG SVVNALS EL V VARQ   +   F  G   S ++  E+     + GT 
Sbjct: 121 KVSGGLHGVGASVVNALSTELDVKVARQGKRYYMDFDHGHVKSAMKVIEEGLPETEHGTT 180

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F+PDP+IF +   ++   L    +  A+L+  +K      +EI  +        F++ 
Sbjct: 181 VHFKPDPEIFRETTTYNIKTLTDRLRELAFLNKGLKITIEDLREIDHERKE-----FHYE 235

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG++ Y++   E+++++       + ++      TVE ++ + +     + ++ N I T 
Sbjct: 236 GGIRHYVEYLNEDQNVLFDPPIYVEGKENDI---TVEVSLQYTDSYRSNLLTFTNNIHTY 292

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           EGGTHE+G ++ALTR I  Y       K   ++  DD+      ++S+   +P+F GQTK
Sbjct: 293 EGGTHETGFKMALTRVINDYGHKAGILKSNETLSGDDVREGLTAVVSIKHPDPQFEGQTK 352

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
           TKL + DA+   ++     F+ +L+++P EA +++E     S+ R+  ++ RE   +K+ 
Sbjct: 353 TKLGNSDARTATDHVFAATFNRFLLEHPDEARQIIEKGQLASKARVAAKRAREVTRKKSG 412

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLAD +      +ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A 
Sbjct: 413 LEISNLPGKLADNTSKDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKAT 472

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            +++  N +I  L  ALG      +      Y K+IIMTDADVDGAHI +LLLT FY+ M
Sbjct: 473 LDRVLANDEIRSLFTALGTGFGDDFDITKANYHKLIIMTDADVDGAHIRTLLLTLFYRFM 532

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
             +I   ++++  PPL+++ QG    Y   +E  ++++   +     K  I R+KGLGEM
Sbjct: 533 KPMITHGYVYIAQPPLYQVRQGKFVKYIDSDEELEQVVSSLQPS--PKPVIQRYKGLGEM 590

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
            A QL ET MD   R LLRV+++      +        LMGTK   R  FI++ A F+++
Sbjct: 591 DAEQLWETTMDPENRHLLRVKLDD----AEQADKIFPMLMGTKVGPRRDFIEQNAKFVEN 646

Query: 684 VG 685
           + 
Sbjct: 647 LD 648


>gi|228992295|ref|ZP_04152226.1| DNA topoisomerase 4 subunit B [Bacillus pseudomycoides DSM 12442]
 gi|228767320|gb|EEM15952.1| DNA topoisomerase 4 subunit B [Bacillus pseudomycoides DSM 12442]
          Length = 654

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 243/651 (37%), Positives = 361/651 (55%), Gaps = 36/651 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AG+ + I V + 
Sbjct: 7   QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            N  ++V+D GRG+P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 67  KNNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L VT+ R   I+ Q+F  G +P + LEK  K + + GT + F+PDP IF     
Sbjct: 125 NALSEWLVVTIKRDGYIYEQRFENGGVPATTLEKIGKTK-QSGTTMHFKPDPSIFSTTN- 182

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L +  +  A+L   +K     ++   E       + F++  G++ ++    E + 
Sbjct: 183 YNYETLCERLRESAFLLKGMKITIRDERNDLE-------DVFHYETGIEAFVSYLNEEKD 235

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I   +     E+ G      E A  + +     I S+ N + T +GGTHE+G + A+TR
Sbjct: 236 SIHPVV-YFTGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA       ++  ++   D+      I+SV + E   +F GQTK KL + + + +V
Sbjct: 292 VFNEYARKVSLLKEKDKNLEGTDIREGLAAIVSVRVPEDLLQFEGQTKGKLGTSEGRSSV 351

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKL 453
           +  + +   ++L +NP  AT L+   I+ ++ R   RK RE  R    +K     L GKL
Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKRSEGTLSGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I
Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A+G    +++  ED+ Y+KV+IMTDAD DGAHI  LLLTFFY+ M  LIE   +F
Sbjct: 472 NTIIYAIGGGVGNEFTVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G        YA  +E    + ++  K       + R+KGLGEM A QL 
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGK----GYMLQRYKGLGEMNADQLW 587

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV+I+         +  +  LMG K + R K+I+    F
Sbjct: 588 ETTMNPETRTLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIERNVQF 634


>gi|51317702|gb|AAT99972.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317704|gb|AAT99973.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317706|gb|AAT99974.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317708|gb|AAT99975.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317710|gb|AAT99976.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317712|gb|AAT99977.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317714|gb|AAT99978.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317716|gb|AAT99979.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317718|gb|AAT99980.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317720|gb|AAT99981.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317722|gb|AAT99982.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317724|gb|AAT99983.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|112031371|gb|ABH88158.1| GyrB [Borrelia hermsii]
 gi|112031375|gb|ABH88160.1| GyrB [Borrelia hermsii]
 gi|164564666|gb|ABY61085.1| DNA gyrase B [Borrelia hermsii]
 gi|164564676|gb|ABY61090.1| DNA gyrase B [Borrelia hermsii]
          Length = 634

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 244/647 (37%), Positives = 367/647 (56%), Gaps = 19/647 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y AS+I++L+GLE VR RPGMYIG      LHHL  EV+DN++DE +AG+ + IEV ++
Sbjct: 2   SYVASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLVYEVVDNSIDEALAGFCDKIEVVIN 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV DNGRGIP++ H +    S LE++LT LH+GGKF+  TY++SGGLHGVGISVV
Sbjct: 62  SDNSITVNDNGRGIPIDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L V V+R   +F Q +SRGIP S ++    V + RGT++TF  D +IF     +
Sbjct: 121 NALSSFLAVIVSRDGKLFKQTYSRGIPTSEVDIIG-VSSARGTKVTFLADTEIFETL-EY 178

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L K  +  A+L+ +++      +   EK+       FYF GG+K ++     N   
Sbjct: 179 DFETLSKRLRELAFLNDKIRISIEDKRSGKEKFLE-----FYFEGGIKAFVDYITNNSKN 233

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           I +E +  +          V   + W E   +   S+ N I T EGGTH +G +    + 
Sbjct: 234 IQNEPYFIEGSCDDVI---VSVGLKWTEGYSDHILSFVNNINTREGGTHVAGFKSGFLKA 290

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + +    ++   K   S+  DD       ++S+ I EP+F GQTK KL +   ++ VE  
Sbjct: 291 MSEAFRDSKISKKDVPSLTLDDFKEGLTAVISIKIPEPQFEGQTKGKLGNSYVKKIVETI 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458
           + D     +  N +E   +L   I  +  R   RK R    +K+A   L LPGKLADC+ 
Sbjct: 351 VHDGLLRVVDDNLLEVDTILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCAS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E++IVEGDSAGGSAK  R+R +QA+LPL GK+LNV     +K+  N +++ ++ 
Sbjct: 411 KNPAEREIYIVEGDSAGGSAKMGRDRFSQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           +LG      +  E LRY K+IIM DADVDG+HI +LLLTFF++ M +LIE  H+++  PP
Sbjct: 471 SLGAGVGKTFYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIENGHVYIAMPP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+++    +  Y +D+  K+  L   +   + K+ + R+KGLGEM  +QL ET M+   R
Sbjct: 531 LYKVKYENREHYFYDDLEKEAFLGSIETGKRDKVSLQRYKGLGEMNPTQLWETTMNPATR 590

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +  ++IN  +      +     LMG   + R +FI+  A  + ++ 
Sbjct: 591 KMKLIKINDAI----QAEKIFVTLMGDDVEPRREFIEHNALDVVNLD 633


>gi|154496136|ref|ZP_02034832.1| hypothetical protein BACCAP_00420 [Bacteroides capillosus ATCC
           29799]
 gi|150274691|gb|EDN01755.1| hypothetical protein BACCAP_00420 [Bacteroides capillosus ATCC
           29799]
          Length = 649

 Score =  601 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 243/654 (37%), Positives = 367/654 (56%), Gaps = 19/654 (2%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
           +       Y  S I++LEGLE VR RPGMYIG T    LHHL  E++DN++DE +AGY +
Sbjct: 10  SATQVDHEYGGSEIQVLEGLEAVRKRPGMYIGSTSSSGLHHLVYEIVDNSIDEALAGYCD 69

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I+V++     ++V DNGRGIPV+  P+      LE++ T LHAGGKF    Y++SGGLH
Sbjct: 70  RIDVAILEGDIISVTDNGRGIPVDIQPQ-TGLPALEVVFTILHAGGKFGGGGYKVSGGLH 128

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS+ L V V +   I   KFSRG     +    +  ++ GT + F+PDP++
Sbjct: 129 GVGASVVNALSEWLEVRVYKDGKIHEMKFSRGKVTQSMTIVGET-DRHGTEVVFKPDPEM 187

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F D   +D   L    + +A+L+  +K      +   E     +++  Y+ GG++ ++  
Sbjct: 188 FEDTV-YDYEILHTRMREEAFLNAGLKIVIQDRRPGME-----QEDTMYYEGGIREFVSF 241

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGL 334
             +N++ I   +      K  +     E A+ + +   EI  S+ N + T EGG HE+G 
Sbjct: 242 INKNKTPIHDGVIYMSGMKDDSI---AEIAMQYTDTYNEILVSFANNVHTPEGGMHETGF 298

Query: 335 RVALTRGIKKY-AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
           + ALT  +  Y  ++   K    +  +D       ++SV + E +F GQTK KL +   +
Sbjct: 299 KQALTNVLNAYGKKMKILKDEEKVSGEDCREGLTAVISVKLTEAQFEGQTKAKLGNAHIR 358

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGK 452
             V   + +  + +L +NP     +L+  +  S  R   RK RE   RKTA+    +P K
Sbjct: 359 TLVSTLVSEKLEEFLEENPAVGKAILDKALTASRAREAARKARESVRRKTALGGAAMPDK 418

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L DC++     TEL+IVEGDSAGGSA Q R+   QA+LPL GK+LNV  A ++K+  N +
Sbjct: 419 LRDCNEVNPELTELYIVEGDSAGGSATQGRDSRFQAILPLWGKMLNVEKARADKVYGNDK 478

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           +  ++ ALG     ++    LRY KVIIM DADVDGAHI +LLLTFF++ M  LIE  ++
Sbjct: 479 LQPVITALGAGIGDEFDVSKLRYHKVIIMADADVDGAHIRTLLLTFFFRFMRPLIENGYV 538

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKET 631
           +   PPL+++T+G  +  A  +E + ++  E    +   K++ISRFKGLGEM   +L ET
Sbjct: 539 YSAVPPLYKLTRGKTTRVAFSDEERDQVSAELRGDNPNAKVDISRFKGLGEMNPHELWET 598

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD  KRTL R+E++  +        +   LMG K + R +FI++ A +  ++ 
Sbjct: 599 TMDPEKRTLRRIELDDAV----AADATFTILMGEKVEPRKEFIEKNAKYAVNLD 648


>gi|331693904|ref|YP_004330143.1| DNA gyrase subunit B [Pseudonocardia dioxanivorans CB1190]
 gi|326948593|gb|AEA22290.1| DNA gyrase, B subunit [Pseudonocardia dioxanivorans CB1190]
          Length = 660

 Score =  601 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 248/667 (37%), Positives = 371/667 (55%), Gaps = 31/667 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
              + Y ASSI +LEGLE VR RPGMYIG T E+ LHHL  EV+DNA+DE +AGYA+ +E
Sbjct: 4   EKKNGYSASSITVLEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGYADRVE 63

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V L  +G +TVVDNGRGIPV  HP    K  +E++LT LHAGGKFD+ +Y +SGGLHGVG
Sbjct: 64  VVLRPDGGVTVVDNGRGIPVGMHP-VEKKPAVEMVLTMLHAGGKFDSDSYAVSGGLHGVG 122

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS  L V +      +SQK++R +P   ++         GT +TF  DP IF  
Sbjct: 123 VSVVNALSSRLDVDIDTDGFHWSQKYTRSVPGPLVK--GAPTRATGTTVTFWADPDIFET 180

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP----------EKEEFYFPGG 268
              ++   + +  Q  A+L+  +      ++                   ++  F++P G
Sbjct: 181 -TTYNVETVRRRLQEMAFLNKGLTIVLRDERNGDNGEAEEPDAEGYVAKIKEYTFHYPNG 239

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           L+ ++    + +  I  ++ +   E  G     +E A+ W       + ++ NTI T EG
Sbjct: 240 LEDFVAHLNKTKDPIHKKLVSFSGEAPGH---ALEVAMQWNSGYTESVYTFANTINTHEG 296

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTHE G R ALT  + +YA   +   ++  ++  DD+      I+SV ++EP+F GQTKT
Sbjct: 297 GTHEEGFRAALTSTVNRYARDKKLLKEKDPALSGDDIREGLAAIVSVKVKEPQFEGQTKT 356

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444
           KL + + +  V+    +    +  +NP EA  ++   ++ ++ R+  RK RE V RK+A 
Sbjct: 357 KLGNTEVKSFVQRVSNEWLADWFERNPTEARTIVNKAVQSAQARMAARKARELVRRKSAG 416

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LP+RGKI+NV  A  
Sbjct: 417 DIGGLPGKLADCRSTDPSRSEVYIVEGDSAGGSAKSGRDSMFQAILPIRGKIINVEKARI 476

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           +++  N ++  ++ ALG     ++    LRY K+++M DADVDG HI +LLLT  ++ M 
Sbjct: 477 DRVLKNTEVQSIITALGTGIHDEFDLAKLRYHKIVLMADADVDGQHIRTLLLTLLFRFMR 536

Query: 565 DLIEQKHLFLISPPLFRITQGT---KSVYAHDEEHKQKILEEFKKHGKGKIE---ISRFK 618
            L+E  H+FL  PPL++I  G    +  +A+ +  +  ++   +  GK   +   + R+K
Sbjct: 537 PLVEHGHVFLAQPPLYKIKWGGRGAEPEFAYSDAERDGLIAAGRAAGKKLPKEEGVQRYK 596

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           GLGEM A +L ET MD   R LLRV ++          +  + LMG   + R  FI   A
Sbjct: 597 GLGEMNAKELWETTMDPAHRVLLRVTLDD----AATADELFSVLMGEDVESRRSFITRNA 652

Query: 679 SFIDDVG 685
             +  + 
Sbjct: 653 KDVRFLD 659


>gi|194467407|ref|ZP_03073394.1| DNA gyrase, B subunit [Lactobacillus reuteri 100-23]
 gi|194454443|gb|EDX43340.1| DNA gyrase, B subunit [Lactobacillus reuteri 100-23]
          Length = 649

 Score =  601 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 247/662 (37%), Positives = 375/662 (56%), Gaps = 20/662 (3%)

Query: 29  IPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDE 88
             +         +  YDAS I++L+GL+ VR RPGMYIG T  + LHHL  E++DN +DE
Sbjct: 2   SNEQQKETKMELASEYDASQIQVLKGLDAVRKRPGMYIGSTSAQGLHHLVWEIVDNGIDE 61

Query: 89  VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148
            +AG+ + I V ++ +  +TV DNGRGIPV+   K   KS LE + T LHAGGKF    Y
Sbjct: 62  ALAGFCDEINVVVNPDNSITVKDNGRGIPVDTQ-KETGKSALETVFTVLHAGGKFGGGGY 120

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTR 206
           ++SGGLHGVG SVVNALS EL V VARQ   +   F  G   S ++  E+     + GT 
Sbjct: 121 KVSGGLHGVGASVVNALSTELDVKVARQGKRYYMDFDHGHVKSAMKVIEEGLPETEHGTT 180

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F+PDP+IF +   ++   L    +  A+L+  +K      ++   +        F++ 
Sbjct: 181 VHFKPDPEIFRETTTYNIKTLTDRLRELAFLNKGLKITIEDLRQADHERKE-----FHYE 235

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG++ Y++   E+++++       + ++      TVE ++ + +     + ++ N I T 
Sbjct: 236 GGIRHYVEYLNEDQNVLFDPPIYVEGKENDI---TVEVSLQYTDSYRSNLLTFTNNIHTY 292

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           EGGTHE+G ++ALTR I  Y       K   ++  DD+      ++S+   +P+F GQTK
Sbjct: 293 EGGTHETGFKMALTRVINDYGHKAGVLKSNETLSGDDVREGLTAVVSIKHPDPQFEGQTK 352

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
           TKL + DA+   ++     F+ +L+++P EA +++E     S+ R+  ++ RE   +K+ 
Sbjct: 353 TKLGNSDARTATDHVFAATFNRFLLEHPDEARQIIEKGQLASKARVAAKRAREVTRKKSG 412

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLAD +      +ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A 
Sbjct: 413 LEISNLPGKLADNTSKDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKAT 472

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            +++  N +I  L  ALG      +      Y K+IIMTDADVDGAHI +LLLT FY+ M
Sbjct: 473 LDRVLANDEIRSLFTALGTGFGDDFDITKANYHKLIIMTDADVDGAHIRTLLLTLFYRFM 532

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
             +I   ++++  PPL+++ QG    Y   +E  ++++   +     K  I R+KGLGEM
Sbjct: 533 KPMITHGYVYIAQPPLYQVRQGKFVKYIDSDEELEQVVSSLQPS--PKPVIQRYKGLGEM 590

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
            A QL ET MD   R LLRV+++      +        LMGTK   R  FI++ A F+++
Sbjct: 591 DAEQLWETTMDPENRHLLRVKLDD----AEQADKIFPMLMGTKVGPRRDFIEQNAKFVEN 646

Query: 684 VG 685
           + 
Sbjct: 647 LD 648


>gi|219684407|ref|ZP_03539351.1| DNA gyrase, B subunit [Borrelia garinii PBr]
 gi|219672396|gb|EED29449.1| DNA gyrase, B subunit [Borrelia garinii PBr]
          Length = 634

 Score =  601 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 246/647 (38%), Positives = 371/647 (57%), Gaps = 19/647 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY AS+I++L+GLE VR RPGMYIG      LHHL  EV+DN++DE +AG+ + I+V ++
Sbjct: 2   NYVASNIQVLKGLEAVRKRPGMYIGSVSVNGLHHLVYEVVDNSIDEALAGFCDKIDVIIN 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV+DNGRGIP + H +    S LE++LT LH+GGKF+  TY++SGGLHGVGISVV
Sbjct: 62  LDNTITVIDNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L V V R   IF Q FS+GIP S +E   +     GT++TF  D +IF     +
Sbjct: 121 NALSSFLEVYVNRDGKIFRQTFSKGIPTSKVEVVGESSIM-GTKVTFLADSEIFETL-DY 178

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L K  +  A+L+ ++       +   EK        FYF GG+K+++    ++   
Sbjct: 179 NFDVLEKRLKELAFLNDKIYITIEDKRAGKEKSSK-----FYFEGGIKSFVDYLTKDSKA 233

Query: 283 ISSEIFTGKTE-KKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
             SE +              ++W  ++ +    I S+ N I T EGGTH  G R  LT+ 
Sbjct: 234 FQSESYYIDGFINDVIVNVGLKWTESYSDN---ILSFVNNINTREGGTHVMGFRSGLTKA 290

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + +  + ++   K   ++  DD       ++SV + EP+F GQTK+KL + + ++ VE  
Sbjct: 291 MNEAFKNSKISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIKKIVEII 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458
           + +     +  NP+E   +LE  I  +  R   RK R    +K A   L LPGKLADC+ 
Sbjct: 351 VYEHLLEIINSNPLEIDIILEKAIRAARAREAARKARESERKKNAFESLALPGKLADCAS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E++IVEGDSAGGSAK  RNR  QA+LPL GK+LNV     +K+  N +++ ++ 
Sbjct: 411 KNPSEREIYIVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           +LG      +    LRY KVIIM DADVDG+HI +LLL FF++ M DLIE  ++++  PP
Sbjct: 471 SLGAGVGKTFDITKLRYHKVIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYIYIAMPP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+++    +  Y +DE+ K+K L+  +   +  I + R+KGLGEM  +QL ET MD ++R
Sbjct: 531 LYKMKYDNRIYYFYDEKEKEKFLDSIESKNRNNIFLQRYKGLGEMNPTQLWETTMDPSRR 590

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +  + I+  +    + +     LMG   + R +FI++ A  + ++ 
Sbjct: 591 KMRLINIDDAI----EAEKIFVTLMGDLVEPRKEFIEQNALNVINLD 633


>gi|321401252|gb|ADW83037.1| DNA gyrase subunit B [Leptospira borgpetersenii]
          Length = 641

 Score =  601 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 251/653 (38%), Positives = 385/653 (58%), Gaps = 19/653 (2%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
                +Y A  I+ILEGLE VR RPGMYIG  DE  LH +  EV+DN++DE +AG+   I
Sbjct: 2   SQKETSYSAGQIKILEGLEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            +S+  N  + V DNGRGIPV+ HP     ST+E+++T LHAGGKF+N  Y++SGGLHGV
Sbjct: 62  RISILPNNIIEVKDNGRGIPVDIHP-DKKISTIEVVMTILHAGGKFENDAYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+ L V V ++  I++QK+ +GIP+SP+E K      RGT + F+PD  IF 
Sbjct: 121 GVSVVNALSEYLEVEVHQKGKIYTQKYEKGIPVSPVEIKGDSSE-RGTIVRFKPDATIFT 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F    L    +  A+L+  +       +  AE   +   E F F GG+ ++++   
Sbjct: 180 T-VDFQFDILSARFRELAFLNKGLVLIIEDRRRGAEGENLLRNE-FQFSGGIVSFVEHIN 237

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337
           EN+  +   I   + +       +++++  + E    I  + N I  + GGTH  G R A
Sbjct: 238 ENKHPMHKVIHFERNKDDVLAEISIQYSETYTE---NIFCFTNNINNNLGGTHLEGFRAA 294

Query: 338 LTRGIKKYAELT---QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           LTR +  + +       K    +  +D+      ++S+ I +P+F  QTK KLV+ + + 
Sbjct: 295 LTRTLNDFLKKDTTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKG 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            ++    +    +  +NP    K+LE  I  ++ R   RK R+   RKT +    LPGKL
Sbjct: 355 IMQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKL 414

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS+     +EL++VEGDSAGGSAKQ R+R+ QA+LPL+GKILNV  A  +KI ++++I
Sbjct: 415 ADCSEKDPAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSSEEI 474

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             LV ALG      ++    +RY K++IMTDAD+DG+HI +LLLTFF++ M  +IE+ +L
Sbjct: 475 RVLVSALGTGIGEDEFNINKIRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIEKGYL 534

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL+ I  G  S YA+ ++ K+++L+     G  K+ I R+KGLGEM   QL ET 
Sbjct: 535 YVAQPPLYLIKHGKNSTYAYSDKEKEELLKNV---GTEKVVIQRYKGLGEMNPEQLWETT 591

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           MD + R +L+V+++  +    + +++ N LMG +   R +FI+  A+ + ++ 
Sbjct: 592 MDPSNRVVLKVKLDDFV----EAEETFNILMGDEVQPRKQFIEINAAKVANLD 640


>gi|330470839|ref|YP_004408582.1| DNA gyrase subunit B [Verrucosispora maris AB-18-032]
 gi|328813810|gb|AEB47982.1| DNA gyrase subunit B [Verrucosispora maris AB-18-032]
          Length = 648

 Score =  601 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 237/652 (36%), Positives = 359/652 (55%), Gaps = 19/652 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y A SI +LEGLE VR RPGMYIG T E+ LHHL  EV+DNA+DE +AG+ + I+V L
Sbjct: 7   QQYGAESITVLEGLEAVRKRPGMYIGSTGERGLHHLVWEVVDNAVDEALAGHCDTIDVVL 66

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G + V DNGRG PV+ HPK   K  +E+ LT LHAGGKFD   Y +SGGLHGVG+SV
Sbjct: 67  LADGGVRVTDNGRGFPVDLHPKL-KKPGVEVALTVLHAGGKFDGKAYAVSGGLHGVGVSV 125

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  + V + +   ++ Q++    P +  +   +  ++ G+ ++F PDP +F     
Sbjct: 126 VNALSTRMAVEIHKDGFVWRQQYDHSKPSTLEK--GEPTDRTGSAVSFWPDPDVFET-TD 182

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   + +  Q  A+L+  +      ++    + G   +  F + GG+  +++    ++S
Sbjct: 183 FDFQTIYRRLQEMAFLTRGLTIHLLDERVAEGEDGKVREVTFKYDGGIADFVRHLNASKS 242

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            +   +     E++G    ++E A+ W E     + ++ N I T EGGTHE G R ALT 
Sbjct: 243 PMHKTVIEFGAEEEG---MSLEIAMQWNESYGESVYTFANNINTHEGGTHEEGFRAALTS 299

Query: 341 GIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
            + +Y    +  +    +  +D+      I+SV +  P+F GQTKTKL +   +  V+  
Sbjct: 300 VVNRYGADKKLLKGDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTPVKSFVQRV 359

Query: 400 LRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
             D    +L +NP EA  ++ +           ++ ++   RK+ +    +PGKLADC  
Sbjct: 360 CNDRLVDWLDRNPAEAKIIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQS 419

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ 
Sbjct: 420 TDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALIT 479

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG      +  E LRY KV++M DADVDG HI +LLLT  ++ M  L+E  H++L +PP
Sbjct: 480 ALGTGIHDDFDMEKLRYHKVVLMADADVDGQHIQTLLLTLLFRFMRPLVELGHVYLAAPP 539

Query: 579 LFRITQGTK---SVYAHDEEHKQKI--LEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           L++I    K   + YA+ +  +  +  L + KK      +I RFKGLGEM   +L ET M
Sbjct: 540 LYKIKWNKKGDDAQYAYSDRERDGLIALRQQKKPNAKPDDIQRFKGLGEMNYPELWETTM 599

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +   RTL +V ++          +  + LMG   + R  FIQ  A  +  + 
Sbjct: 600 NPATRTLRQVTLDD----AATADELFSVLMGEDVEARRSFIQRNAKDVRFLD 647


>gi|306833889|ref|ZP_07467013.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus bovis
           ATCC 700338]
 gi|304423890|gb|EFM27032.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus bovis
           ATCC 700338]
          Length = 650

 Score =  601 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 255/649 (39%), Positives = 377/649 (58%), Gaps = 24/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A  IEV 
Sbjct: 12  AKEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFATHIEVF 71

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGVG S
Sbjct: 72  IEKDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTILHAGGKFGGGGYKVSGGLHGVGSS 130

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L V+V R   I  Q++ RG  +S L       ++ GT + F PDP+IF +  
Sbjct: 131 VVNALSTQLDVSVHRNGKIHYQEYRRGHVVSDLAVIGDT-DRHGTTVHFTPDPEIFTETT 189

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD  +L K  Q  A+L+  ++   +  +E  E     +++ +++ GG+ +Y++   EN+
Sbjct: 190 VFDFDKLAKRIQELAFLNRGLRISITDKREGIE-----QEKHYHYEGGISSYVEFINENK 244

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
             I         E  G    +VE A+ +       + S+ N I T EGGTHE G R ALT
Sbjct: 245 EAIFENPIYTDGELDGV---SVEVAMQYTTSYHETVMSFANNIHTHEGGTHEQGFRTALT 301

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA   +   ++  ++  +D+      ++SV    P+F GQTKTKL + +  +   
Sbjct: 302 RVINDYARQNKLLKEKDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 361

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
               + F  +L++NP  A K++E  I  S+ R+  ++ RE   +K+ +    LPGKLADC
Sbjct: 362 RLFSEAFSRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADC 421

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S N A   ELFIVEGDSAGGSAK  R+R +QA+LP+RGKILNV  A  +KI  N++I  L
Sbjct: 422 SSNDATMNELFIVEGDSAGGSAKSGRDREHQAILPIRGKILNVEKASMDKILANEEIRSL 481

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    +++     RY K++IMTDADVDGAHI +LLLT  Y+ M  ++E  ++++  
Sbjct: 482 FTAMGTGFGAEFDVSKARYHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQ 541

Query: 577 PPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           PP++ +  G++   Y       E   Q+ +      G+ K  + R+KGLGEM   QL ET
Sbjct: 542 PPIYGVKVGSEIKEYIQPGANQEIELQEAMAR-HSVGRSKPTVQRYKGLGEMDDHQLWET 600

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            MD   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 601 TMDPENRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 645


>gi|323341105|ref|ZP_08081353.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
           ruminis ATCC 25644]
 gi|323091526|gb|EFZ34150.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
           ruminis ATCC 25644]
          Length = 652

 Score =  601 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 251/649 (38%), Positives = 372/649 (57%), Gaps = 22/649 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YDAS I++LEGLE VR RPGMYIG T  + LHHL  E+IDN +DE +AG+ + I V+++ 
Sbjct: 18  YDASQIQVLEGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNGIDEALAGFCDEINVTVEK 77

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +  +TV DNGRGIPV+   K   +  LE + T LHAGGKF    Y++SGGLHGVG SVVN
Sbjct: 78  DNSITVQDNGRGIPVDIQKK-TGRPALETVYTVLHAGGKFGGGGYKVSGGLHGVGASVVN 136

Query: 164 ALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPDPKIFGDKA 220
           ALS EL V V R     ++   F  G   +P++   + +    GTR+ F PDP IF +  
Sbjct: 137 ALSTELDVQVKREGDTNVYGIDFELGKVKNPMKVIGQCQEHEHGTRVHFCPDPDIFKETT 196

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +D   L    +  A+L+  +K      +        P KEEF++ GG+K Y++   + +
Sbjct: 197 VYDIKVLTTRIRELAFLNKGLKITIEDKR-----PETPTKEEFHYAGGIKHYVEYLNKGK 251

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
            ++  +    + E++     TVE A+ + ++      ++ N I T EGGTHESG + ALT
Sbjct: 252 EVLFDDPIYVEGEQRNI---TVEVALQYTDDFHSNLLTFTNNIHTYEGGTHESGFKTALT 308

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA       +   ++  +D+      ++S+   +P+F GQTKTKL + DA+   +
Sbjct: 309 RVINDYARKAGILKENDDNLSGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSDARAVTD 368

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
               + F  ++++NP  A +++E  ++        +R +    +K  +    LPGKLAD 
Sbjct: 369 KMFSETFSKFMLENPSVAKRIVEKGMLAAKARVAAKRAREVTRKKNGLEISNLPGKLADN 428

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +      +ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I  N++I  L
Sbjct: 429 TSKDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASLDRILANEEIRSL 488

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             ALG      +  E   Y K+IIMTDADVDGAHI +LLLT FY+ M  +IE+ ++++  
Sbjct: 489 FTALGTGFGQDFDVEKANYHKLIIMTDADVDGAHIRTLLLTLFYRFMKPMIEKGYVYIAQ 548

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+++ QG    Y   +E  + +L   +     K  + R+KGLGEM A QL ET MD  
Sbjct: 549 PPLYQVRQGKMIRYIDSDEELKDVLGSLQPS--PKPVVQRYKGLGEMDAEQLWETTMDPE 606

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           KR LLRV ++      ++       LMG +   R +FI++ A+F++++ 
Sbjct: 607 KRRLLRVNLSD----AEEANSVFEMLMGDQVGPRRQFIEDNATFVNNLD 651


>gi|321401256|gb|ADW83039.1| DNA gyrase subunit B [Leptospira borgpetersenii]
          Length = 641

 Score =  601 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 250/653 (38%), Positives = 385/653 (58%), Gaps = 19/653 (2%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
                +Y A  I+ILEGLE VR RPGMYIG  DE  LH +  EV+DN++DE +AG+   I
Sbjct: 2   SQKETSYSAGQIKILEGLEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            +S+  N  + V DNGRGIPV+ HP     ST+E+++T LHAGGKF+N  Y++SGGLHGV
Sbjct: 62  RISILPNNIIEVKDNGRGIPVDIHP-DKKISTIEVVMTILHAGGKFENDAYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+ L V V ++  I++QK+ +GIP+SP+E K      RGT + F+PD  IF 
Sbjct: 121 GVSVVNALSEYLEVEVHQKGKIYTQKYEKGIPVSPVEIKGDSSE-RGTIVRFKPDATIFT 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F    L    +  A+L+  +       +  +E   +   E F F GG+ ++++   
Sbjct: 180 T-VDFQFDILSARFRELAFLNKGLVLIIEDRRRGSEGESLLRNE-FQFSGGIVSFVEHIN 237

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337
           EN+  +   I   + +       +++++  + E    I  + N I  + GGTH  G R A
Sbjct: 238 ENKHPMHKVIHFERNKDDVLAEISIQYSETYTE---NIFCFTNNINNNLGGTHLEGFRAA 294

Query: 338 LTRGIKKYAELT---QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           LTR +  + +       K    +  +D+      ++S+ I +P+F  QTK KLV+ + + 
Sbjct: 295 LTRTLNDFLKKDTTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKG 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            ++    +    +  +NP    K+LE  I  ++ R   RK R+   RKT +    LPGKL
Sbjct: 355 IMQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKL 414

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS+     +EL++VEGDSAGGSAKQ R+R+ QA+LPL+GKILNV  A  +KI ++++I
Sbjct: 415 ADCSEKDPAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSSEEI 474

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             LV ALG      ++    +RY K++IMTDAD+DG+HI +LLLTFF++ M  +IE+ +L
Sbjct: 475 RVLVSALGTGIGEDEFNINKIRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIEKGYL 534

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL+ I  G  S YA+ ++ K+++L+     G  K+ I R+KGLGEM   QL ET 
Sbjct: 535 YVAQPPLYLIKHGKNSTYAYSDKEKEELLKNV---GTEKVVIQRYKGLGEMNPEQLWETT 591

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           MD + R +L+V+++  +    + +++ N LMG +   R +FI+  A+ + ++ 
Sbjct: 592 MDPSNRVVLKVKLDDFV----EAEETFNILMGDEVQPRKQFIEINAAKVANLD 640


>gi|302520521|ref|ZP_07272863.1| DNA gyrase, B subunit [Streptomyces sp. SPB78]
 gi|318057387|ref|ZP_07976110.1| DNA gyrase subunit B [Streptomyces sp. SA3_actG]
 gi|318079451|ref|ZP_07986783.1| DNA gyrase subunit B [Streptomyces sp. SA3_actF]
 gi|302429416|gb|EFL01232.1| DNA gyrase, B subunit [Streptomyces sp. SPB78]
          Length = 718

 Score =  600 bits (1547), Expect = e-169,   Method: Composition-based stats.
 Identities = 255/724 (35%), Positives = 388/724 (53%), Gaps = 46/724 (6%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIP------------------DSPAFANQSASD 42
           M D      +      +G    + + G+                    D     +  A  
Sbjct: 1   MADSGNPNENNPSTPDEGGRSAVPEPGQSDVSRETSAAAEAEADAVSGDVSRETSSIAES 60

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +YDA++I +LEGL+ VR RPGMYIG T E+ LHHL  EV+DN++DE +AG+A+ I+V++ 
Sbjct: 61  SYDANAITVLEGLDAVRKRPGMYIGSTGERGLHHLVQEVVDNSVDEALAGHADTIDVTIL 120

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G + V+DNGRGIPV   P    K  +E++LT LHAGGKF    Y +SGGLHGVG+SVV
Sbjct: 121 PDGGVRVIDNGRGIPVGIVP-SEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVSVV 179

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  + V V     +++Q++ RG+P++PL K  +   + GT +TF  D  +F     +
Sbjct: 180 NALSTRVEVEVKTDGHVWTQQYERGVPIAPLHK-GEATQEHGTSVTFWADGDVFET-TEY 237

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKE--------------IAEKYGIPEKEEFYFPGG 268
               L +  Q  A+L+  +    + +++               AE+        +++ GG
Sbjct: 238 SFETLARRFQEMAFLNKGLTIKLTDERDSAKATAGADSAEVVDAEEAPEARTVTYHYEGG 297

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           +  +++     +  +          +      +VE A+ W       + S+ NTI T EG
Sbjct: 298 IVDFVKYLNSRKGEVIHPSVIDVEAEDKEKLLSVEVAMQWNAGYTEGVYSFANTIHTHEG 357

Query: 328 GTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTHE G R ALT  + KYA   +   ++  ++  DD+      I+SV + EP+F GQTKT
Sbjct: 358 GTHEEGFRGALTTIVNKYARDKKLLREKDGNLTGDDIREGLTAIISVKLGEPQFEGQTKT 417

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-I 444
           KL + +A+  V+  + +    +  +NP EA+ ++   I  +  R+  RK R++ R+   +
Sbjct: 418 KLGNTEARTFVQKIVYERLADWFDRNPNEASDIIRKGISAATARVAARKARDLTRRKGLL 477

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKL+DC  N     E+FIVEGDSAGGSAK  R+   QA+LP+RGKILNV  A  
Sbjct: 478 ETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRDPMYQAILPIRGKILNVEKARV 537

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           +KI +NQ+I  L+ A G      +  E LRY K+I+M DADVDG HI +LLLTF ++ M 
Sbjct: 538 DKILHNQEIQALISAFGAGVHDDFDIEKLRYHKIILMADADVDGQHINTLLLTFLFRFMR 597

Query: 565 DLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE--ISRFKGLG 621
            L+E  H++L  PPL++I  G   V YA+ +  +  ++   +++GK   E  + RFKGLG
Sbjct: 598 PLVEAGHVYLSRPPLYKIKWGKDDVDYAYSDRERDALITLGRENGKRLREGAVQRFKGLG 657

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           EM A +L+ T MD + R L +V ++          D  + LMG   + R +FIQ  A  +
Sbjct: 658 EMDAEELRVTTMDQDHRVLGQVTLDD----AAQADDLFSVLMGEDVEARRQFIQRNAKDV 713

Query: 682 DDVG 685
             + 
Sbjct: 714 RFLD 717


>gi|302543959|ref|ZP_07296301.1| DNA gyrase, B subunit [Streptomyces hygroscopicus ATCC 53653]
 gi|302461577|gb|EFL24670.1| DNA gyrase, B subunit [Streptomyces himastatinicus ATCC 53653]
          Length = 676

 Score =  600 bits (1547), Expect = e-169,   Method: Composition-based stats.
 Identities = 258/676 (38%), Positives = 379/676 (56%), Gaps = 19/676 (2%)

Query: 18  GSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHL 77
            S   ++    IPD  A A  S    YDAS+I +LEGL+ VR RPGMYIG T E+ LHHL
Sbjct: 11  DSGNPIENITSIPDGEALAPPS----YDASAITVLEGLDAVRKRPGMYIGSTGERGLHHL 66

Query: 78  FSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137
             EV+DN++DE +AG+A+ I+V++  +G + VVDNGRGIPV   P    K  +E++LT L
Sbjct: 67  VQEVVDNSVDEAMAGHADTIDVTILPDGGVRVVDNGRGIPVGIVP-SEGKPAVEVVLTVL 125

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKF    Y +SGGLHGVG+SVVNALS ++ V V      ++Q +  G+P +PL K E
Sbjct: 126 HAGGKFGGGGYAVSGGLHGVGVSVVNALSSKVSVEVKTDGYRWTQDYKTGVPTAPLAKNE 185

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE-IAEKYG 256
                 GT +TF  D  IF     +    L +  Q  A+L+  +    + ++E   ++ G
Sbjct: 186 ATEE-TGTTVTFWADGDIFET-TEYSFETLSRRFQEMAFLNKGLSISLTDEREAHVDEEG 243

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-I 315
            P   ++++ GG+  ++      +  +      G   +      ++E A+ W  +  E +
Sbjct: 244 KPLSVKYHYEGGIVDFVTYLNSRKGELVHPTVIGFEAEDKERLLSLEIAMQWNTQYSEGV 303

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVF 373
            S+ NTI T EGGTHE G R ALT  I KYA   +   ++  ++  +D+      I+SV 
Sbjct: 304 YSFANTIHTHEGGTHEEGFRAALTYLINKYARDRKLLREKDDNLTGEDIREGLTAIISVK 363

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + EP+F GQTKTKL + +A+  V+  + +    +L +NP EA  ++   I+ +  R+  R
Sbjct: 364 LGEPQFEGQTKTKLGNTEAKTFVQKIVNEHLADWLDRNPNEAADIIRKGIQAATARVAAR 423

Query: 434 KQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           K R++ R+   +    LPGKL+DC  N     E+FIVEGDSAGGSAK  R+   QA+LP+
Sbjct: 424 KARDLTRRKGLLETASLPGKLSDCQSNDPSKCEIFIVEGDSAGGSAKSGRDPQYQAILPI 483

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIA 552
           RGKILNV  A  +KI  N ++  L+ A G      +    LRY K+I+M DADVDG HI 
Sbjct: 484 RGKILNVEKARVDKILQNNEVQALISAFGTGVHEDFDIAKLRYHKIILMADADVDGQHIN 543

Query: 553 SLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGK-- 609
           +LLLTF ++ M  L+E  H+FL  PPL++I  G     YA+ +  +  +++  ++ GK  
Sbjct: 544 TLLLTFLFRFMRPLVEAGHVFLSRPPLYKIKWGRDDFEYAYSDRERDALIQAGREQGKRI 603

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669
               + RFKGLGEM A +L+ T MD + R L +V ++          D  + LMG   + 
Sbjct: 604 KDDSVQRFKGLGEMNAEELRVTTMDLDSRVLGQVTLDD----AAQADDLFSVLMGEDVEA 659

Query: 670 RFKFIQERASFIDDVG 685
           R  FIQ  A  +  + 
Sbjct: 660 RRSFIQRNAKDVRFLD 675


>gi|148543248|ref|YP_001270618.1| DNA gyrase subunit B [Lactobacillus reuteri DSM 20016]
 gi|184152660|ref|YP_001841001.1| DNA gyrase subunit B [Lactobacillus reuteri JCM 1112]
 gi|227364311|ref|ZP_03848404.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus reuteri MM2-3]
 gi|325683510|ref|ZP_08163026.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
           reuteri MM4-1A]
 gi|148530282|gb|ABQ82281.1| DNA gyrase subunit B [Lactobacillus reuteri DSM 20016]
 gi|183224004|dbj|BAG24521.1| DNA gyrase subunit B [Lactobacillus reuteri JCM 1112]
 gi|227070624|gb|EEI08954.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus reuteri MM2-3]
 gi|324977860|gb|EGC14811.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
           reuteri MM4-1A]
          Length = 649

 Score =  600 bits (1547), Expect = e-169,   Method: Composition-based stats.
 Identities = 247/662 (37%), Positives = 375/662 (56%), Gaps = 20/662 (3%)

Query: 29  IPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDE 88
             +         +  YDAS I++L+GL+ VR RPGMYIG T  + LHHL  E++DN +DE
Sbjct: 2   SNEQQKETKMELASEYDASQIQVLKGLDAVRKRPGMYIGSTSAQGLHHLVWEIVDNGIDE 61

Query: 89  VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148
            +AG+ + I V ++ +  +TV DNGRGIPV+   K   KS LE + T LHAGGKF    Y
Sbjct: 62  ALAGFCDEINVVVNPDNSITVKDNGRGIPVDTQ-KETGKSALETVFTVLHAGGKFGGGGY 120

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTR 206
           ++SGGLHGVG SVVNALS EL V VARQ   +   F  G   S ++  E+     + GT 
Sbjct: 121 KVSGGLHGVGASVVNALSTELDVKVARQGKRYYMDFDHGHVKSAMKVIEEGLPETEHGTT 180

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F+PDP+IF +   ++   L    +  A+L+  +K      ++   +        F++ 
Sbjct: 181 VHFKPDPEIFRETTTYNIKTLTDRLRELAFLNKGLKITIEDLRQADHERKE-----FHYE 235

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG++ Y++   E+++++       + ++      TVE ++ + +     + ++ N I T 
Sbjct: 236 GGIRHYVEYLNEDQNVLFDPPIYVEGKENDI---TVEVSLQYTDSYRSNLLTFTNNIHTY 292

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           EGGTHE+G ++ALTR I  Y       K   ++  DD+      ++S+   +P+F GQTK
Sbjct: 293 EGGTHETGFKMALTRVINDYGHKAGILKSNETLSGDDVREGLTAVVSIKHPDPQFEGQTK 352

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
           TKL + DA+   ++     F+ +L+++P EA +++E     S+ R+  ++ RE   +K+ 
Sbjct: 353 TKLGNSDARTATDHVFAATFNRFLLEHPDEARQIIEKGQLASKARVAAKRAREVTRKKSG 412

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLAD +      +ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A 
Sbjct: 413 LEISNLPGKLADNTSKDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKAT 472

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            +++  N +I  L  ALG      +      Y K+IIMTDADVDGAHI +LLLT FY+ M
Sbjct: 473 LDRVLANDEIRSLFTALGTGFGDDFDITKANYHKLIIMTDADVDGAHIRTLLLTLFYRFM 532

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
             +I   ++++  PPL+++ QG    Y   +E  ++++   +     K  I R+KGLGEM
Sbjct: 533 KPMITHGYVYIAQPPLYQVRQGKFVKYIDSDEELEQVVSSLQPS--PKPVIQRYKGLGEM 590

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
            A QL ET MD   R LLRV+++      +        LMGTK   R  FI++ A F+++
Sbjct: 591 DAEQLWETTMDPENRHLLRVKLDD----AEQADKIFPMLMGTKVGPRRDFIEQNAKFVEN 646

Query: 684 VG 685
           + 
Sbjct: 647 LD 648


>gi|172039685|ref|YP_001799399.1| DNA gyrase subunit B [Corynebacterium urealyticum DSM 7109]
 gi|171850989|emb|CAQ03965.1| DNA gyrase subunit B [Corynebacterium urealyticum DSM 7109]
          Length = 699

 Score =  600 bits (1547), Expect = e-169,   Method: Composition-based stats.
 Identities = 250/703 (35%), Positives = 375/703 (53%), Gaps = 52/703 (7%)

Query: 23  LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82
                  P +    ++    +YDASSI ILEGLE VR RPGMYIG T E+ LHHL  EV+
Sbjct: 8   PTVGAPEPQNTPAPHEHKPGDYDASSITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVV 67

Query: 83  DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142
           DN++DE +AGYA  + V+L  +G + V D+GRGIPVE HP      T+++++T LHAGGK
Sbjct: 68  DNSVDEAMAGYAKKVSVTLKEDGSVEVSDDGRGIPVEMHP--SGAPTVQVVMTQLHAGGK 125

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD+ +Y +SGGLHGVGISVVNALS  +   + R    + Q+F   +P      + K +  
Sbjct: 126 FDSDSYAVSGGLHGVGISVVNALSTRVETRIVRDGFEWYQEFVNAVPQEL--VQGKKKRG 183

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK------------- 249
            GT   F PDP+IF     F+   + K  Q  A+L+  +    + ++             
Sbjct: 184 SGTTQRFWPDPEIFET-VEFNFDTVAKRLQEMAFLNKGLTITLTDERPEAIEAEDPEEQL 242

Query: 250 -------------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
                              E A+K   P  + +++P GLK Y+      +  I   I + 
Sbjct: 243 EDLTEQAEAPKSAEERQAEEEAKKKKGPRTKTYHYPEGLKDYVAFINRKKQPIHPTIVSF 302

Query: 291 KTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             + +      VE A+ W +   + + ++ NTI T EGGTHE G R A+T  I +YA   
Sbjct: 303 DAKGEDH---EVEVALQWNDGYQQSVHTFANTINTFEGGTHEEGFRAAMTSLINRYARDQ 359

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
           +   ++  ++  DD+      ++SV + +P+F GQTKTKL + + +  V+ A+ +    +
Sbjct: 360 KLLKEKDSNLTGDDVREGLAAVISVRVGDPQFEGQTKTKLGNTEIRGFVQRAINEHLSDW 419

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
           L  NP EA  +++  +  +  R   RK R+ V RK+A     LPGKLADC       +EL
Sbjct: 420 LDANPAEAKVIVQKAVASAHARQAARKARDLVRRKSASDMGGLPGKLADCRSKDPIKSEL 479

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS 526
           ++VEGDSAGGSAK  R+   QA+LPLRGKILNV  A  +++  N ++  ++ ALG     
Sbjct: 480 YVVEGDSAGGSAKSGRDSMYQAILPLRGKILNVEKARMDRVLKNAEVQAIITALGTGIHD 539

Query: 527 QYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT 586
           ++    LRY K+++M DADVDG HIA+LLLT  ++ M  L+E  +++L  PPL+++  G 
Sbjct: 540 EFDINKLRYHKIVLMADADVDGQHIATLLLTLLFRLMRPLVEGGYVYLAQPPLYKLKWGK 599

Query: 587 -KSVYAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLR 642
            +  YA  +  + + L++  + G+       I R+KGLGEM   +L ET MD   RTL +
Sbjct: 600 GEPGYAFSDRERDEQLKKGLEEGRKIDTDDGIQRYKGLGEMNPKELWETTMDPTTRTLRQ 659

Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           V +       +   +  + LMG     R  FI   A  +  + 
Sbjct: 660 VSLED----AEAADELFSILMGDDVVARRSFITRNARDVRFLD 698


>gi|321401254|gb|ADW83038.1| DNA gyrase subunit B [Leptospira borgpetersenii]
          Length = 641

 Score =  600 bits (1547), Expect = e-169,   Method: Composition-based stats.
 Identities = 251/652 (38%), Positives = 385/652 (59%), Gaps = 19/652 (2%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
               +Y A  I+ILEGLE VR RPGMYIG  DE  LH +  EV+DN++DE +AG+   I 
Sbjct: 3   QKETSYSAGQIKILEGLEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEIR 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           +S+  N  + V DNGRGIPV+ HP     ST+E+++T LHAGGKF+N  Y++SGGLHGVG
Sbjct: 63  ISILPNNIIEVKDNGRGIPVDIHP-DKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVG 121

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+ L V V ++  I++QK+ +GIP+SP+E K      RGT + F+PD  IF  
Sbjct: 122 VSVVNALSEYLEVEVHQKGKIYTQKYEKGIPVSPVEIKGDSSE-RGTIVRFKPDATIFTT 180

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L    +  A+L+  +       +  AE   +   E F F GG+ ++++   E
Sbjct: 181 -VDFQFDILSARFRELAFLNKGLVLIIEDRRRGAEGENLLRNE-FQFSGGIVSFVEHINE 238

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
           N+  +   I   + +       +++++  + E    I  + N I  + GGTH  G R AL
Sbjct: 239 NKHPMHKVIHFERNKDDVLAEISIQYSETYTE---NIFCFTNNINNNLGGTHLEGFRAAL 295

Query: 339 TRGIKKYAELT---QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           TR +  + +       K    +  +D+      ++S+ I +P+F  QTK KLV+ + +  
Sbjct: 296 TRTLNDFLKKDTTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKGI 355

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454
           ++    +    +  +NP    K+LE  I  ++ R   RK R+   RKT +    LPGKLA
Sbjct: 356 MQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKLA 415

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS+     +EL++VEGDSAGGSAKQ R+R+ QA+LPL+GKILNV  A  +KI ++++I 
Sbjct: 416 DCSEKDPAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSSEEIR 475

Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            LV ALG      ++    +RY K++IMTDAD+DG+HI +LLLTFF++ M  +IE+ +L+
Sbjct: 476 VLVSALGTGIGEDEFNINKIRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIEKGYLY 535

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           +  PPL+ I  G  S YA+ ++ K+++L+     G  K+ I R+KGLGEM   QL ET M
Sbjct: 536 VAQPPLYLIKHGKNSTYAYSDKEKEELLKNV---GTEKVVIQRYKGLGEMNPEQLWETTM 592

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D + R +L+V+++  +    + +++ N LMG +   R +FI+  A+ + ++ 
Sbjct: 593 DPSNRVVLKVKLDDFV----EAEETFNILMGDEVQPRKQFIEINAAKVANLD 640


>gi|311030250|ref|ZP_07708340.1| DNA topoisomerase IV subunit B [Bacillus sp. m3-13]
          Length = 655

 Score =  600 bits (1547), Expect = e-169,   Method: Composition-based stats.
 Identities = 236/650 (36%), Positives = 360/650 (55%), Gaps = 34/650 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE + GY + I V++ 
Sbjct: 7   EYNDDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEILDNSVDEALGGYGDHIIVTIH 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V D GRG+P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 67  KDNSISVKDKGRGMPTGMHKM--GKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+ L VT+ R   ++ Q+F  G       +K    N+ GT I F+PD  IF     +
Sbjct: 125 NALSEWLTVTIKRDGIVYEQRFENGGKPVTTLEKIGTTNQTGTTIHFKPDTTIFSTTT-Y 183

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L +  +  A+L   +K   + ++   +       E F++  G++ ++    E +  
Sbjct: 184 NFETLCERLRESAFLLKGLKIELNDERNSVK-------EVFHYESGIEAFVTYLNEEKDS 236

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           + + + + +  + G     +++A  + +     I S+ N + T +GGTHE+G + A+TR 
Sbjct: 237 LHNVV-SFEGAQNGI---EIDFAFQFNDGYSETILSFVNNVRTKDGGTHEAGAKTAMTRI 292

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397
             +YA       ++  ++   D+      I+SV I E   +F GQTK KL + +A+  V+
Sbjct: 293 FNEYARKVNLLKEKDKNLDGSDIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAVD 352

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG---KLA 454
           + + +   ++L +NP  ++ L++  I+  + R   RK RE  R    RK        KL 
Sbjct: 353 SVVSEHLAYFLEENPETSSMLVKKSIKAFQAREAARKAREDARSGKKRKRSDAMLSGKLT 412

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
                     E+++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I 
Sbjct: 413 PAQSRNPQKNEIYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++ A+G      +  ED+ Y+KV+IMTDAD DGAHI  LLLTFFY+ M  LIE   +F+
Sbjct: 473 TIIHAIGGGVGPDFSVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEFGKVFI 532

Query: 575 ISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
             PPL+++++G   K V  YA  +E  Q  +++  +       I R+KGLGEM A QL E
Sbjct: 533 ALPPLYKVSKGTGKKEVLEYAWSDEELQGAIQKIGR----GYTIQRYKGLGEMNADQLWE 588

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           T M+ + RTL+RV I+         +  +  LMG K + R K+I+   +F
Sbjct: 589 TTMNPDTRTLIRVRIDD----AARAERRVTTLMGDKVEPRRKWIESHVAF 634


>gi|86606189|ref|YP_474952.1| DNA gyrase subunit B [Synechococcus sp. JA-3-3Ab]
 gi|86554731|gb|ABC99689.1| DNA gyrase, B subunit [Synechococcus sp. JA-3-3Ab]
          Length = 642

 Score =  600 bits (1547), Expect = e-169,   Method: Composition-based stats.
 Identities = 255/649 (39%), Positives = 367/649 (56%), Gaps = 21/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++NY A  I++LEGLE VR RPGMYIG T  K LHHL  EV+DN++DE +AGY N IEV+
Sbjct: 2   TENYGAEQIQVLEGLEAVRRRPGMYIGSTGPKGLHHLVYEVVDNSVDEALAGYCNEIEVT 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +G ++V+DNGRGIPV+ HPK   +S L  ++T LHAGGKF    Y++SGGLHGVG+S
Sbjct: 62  LHPDGSVSVLDNGRGIPVDIHPK-TGQSALVTVMTVLHAGGKFGGGGYKVSGGLHGVGVS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLS--PLEKKEKVRNKRGTRITFRPDPKIFGD 218
           VVNALS+ L   V R+  ++ Q+F RG  +     E +     +RGT + F+PD ++   
Sbjct: 121 VVNALSEWLEARVWREGKVYFQRFERGAVVGSLQSEPQPAGAQRRGTEVRFKPD-ELIFP 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
           +  FD + L    +  AYL+  +K  +S  +        P +E + F GG+K Y+     
Sbjct: 180 EREFDYSLLAARLRELAYLNAGLKIIFSDLRR-----DPPHREVYQFAGGIKEYVAFINH 234

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
            ++ I  +I   + E+ G                  +  + N I T EGGTH  GL+ AL
Sbjct: 235 EKTPIHPDIIYVRGERDGV-EVEAALQWCADVYTDTLIGFANNIRTTEGGTHLEGLKTAL 293

Query: 339 TRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           T  I   A      +    ++  +++      IL+V +  PEF GQTKTKL + + +  V
Sbjct: 294 TLTINSQARKLNKLKDSDSNLAGENVREGLTAILAVKVPNPEFEGQTKTKLGNTEVRGIV 353

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
           +  + +    YL  NP  A  ++E  I+        R+ RE V RK+A+    LPGKLAD
Sbjct: 354 QTLVSEALTEYLEFNPNVARGIVEKAIQSFNAAEAARRARELVRRKSALESSTLPGKLAD 413

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS      +E+++VEGDSAGGSAKQ R+R  QAVLPLRGKILN+  A   KI  N +I  
Sbjct: 414 CSCRDPAESEVYLVEGDSAGGSAKQGRDRQFQAVLPLRGKILNIEKADPAKIYKNAEIQA 473

Query: 516 LVQALGCRTR-SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           ++ ALG   +  ++    LRY ++I+MTDADVDG+HI +LLLTFFY+    L+EQ ++++
Sbjct: 474 MITALGLGVKGEEFDPSQLRYHRIILMTDADVDGSHIRTLLLTFFYRYQKALLEQGYVYI 533

Query: 575 ISPPLFRITQG-TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
             PPL++I  G     Y ++E  K+++L     +   K  I RFKGLGEM+  QL ET M
Sbjct: 534 ACPPLYKIEWGRNNVRYCYNEAEKEQVLRSLPAN--TKYTIQRFKGLGEMMPEQLWETTM 591

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           +   R L ++ I        +       LMG     R +FI+  ++ +D
Sbjct: 592 NPATRVLKQITIED----AAEADRIFTILMGDAVGPRREFIEAHSAQLD 636


>gi|42782667|ref|NP_979914.1| DNA topoisomerase IV subunit B [Bacillus cereus ATCC 10987]
 gi|217960999|ref|YP_002339567.1| DNA topoisomerase IV subunit B [Bacillus cereus AH187]
 gi|229140210|ref|ZP_04268768.1| DNA topoisomerase 4 subunit B [Bacillus cereus BDRD-ST26]
 gi|42738593|gb|AAS42522.1| DNA topoisomerase IV, B subunit [Bacillus cereus ATCC 10987]
 gi|217067922|gb|ACJ82172.1| DNA topoisomerase IV, B subunit [Bacillus cereus AH187]
 gi|228643296|gb|EEK99569.1| DNA topoisomerase 4 subunit B [Bacillus cereus BDRD-ST26]
          Length = 654

 Score =  600 bits (1547), Expect = e-169,   Method: Composition-based stats.
 Identities = 240/651 (36%), Positives = 362/651 (55%), Gaps = 36/651 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AG+ + I V + 
Sbjct: 7   QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V+D GRG+P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 67  KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L VT+ R   I+ Q+F  G +P++ LEK  K +   GT + F+PD  IF     
Sbjct: 125 NALSEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 182

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L +  +  A+L   +K     ++   E       + F++  G++ ++    E + 
Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DVFHYETGIEAFVSYLNEEKD 235

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I   +     E+ G      E A  + +     I S+ N + T +GGTHE+G + A+TR
Sbjct: 236 SIHPVV-YFSGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA       ++  ++   D+      I+SV + E   +F GQTK KL + +A+ ++
Sbjct: 292 VFNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSI 351

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453
           +  + +   ++L +NP  AT L+   I+ ++ R   RK RE  R    +K     L GKL
Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I
Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A+G    +++  ED+ Y+KV+IMTDAD DGAHI  LLLTFFY+ M  LIE   +F
Sbjct: 472 NTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G        YA  ++   ++ ++  K       + R+KGLGEM A QL 
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDDELDEVTKKVGK----GYMLQRYKGLGEMNADQLW 587

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV+I+         +  +  LMG K + R K+I+    F
Sbjct: 588 ETTMNPETRTLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIERNVQF 634


>gi|307295605|ref|ZP_07575441.1| DNA topoisomerase IV, B subunit [Sphingobium chlorophenolicum L-1]
 gi|306878644|gb|EFN09864.1| DNA topoisomerase IV, B subunit [Sphingobium chlorophenolicum L-1]
          Length = 658

 Score =  600 bits (1547), Expect = e-169,   Method: Composition-based stats.
 Identities = 347/657 (52%), Positives = 460/657 (70%), Gaps = 10/657 (1%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            AN S +  YDAS+I +LEGLEPVR RPGMYIGGTDE+ALHHL SEV+DN+MDE +AG+A
Sbjct: 7   AANSSTAAQYDASAIEVLEGLEPVRRRPGMYIGGTDERALHHLASEVLDNSMDEAVAGHA 66

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             IEV L+    LT+ DNGRGIPV+ HPKFP KS LE+ILTTLH+GGKF +  Y  SGGL
Sbjct: 67  TRIEVLLEPGNRLTITDNGRGIPVDPHPKFPGKSALEVILTTLHSGGKFSDKAYATSGGL 126

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVGISVVNALS    V VAR   +F Q F++G+P S LEK     N+RGT ++F PD +
Sbjct: 127 HGVGISVVNALSINTVVEVARNKELFRQSFTQGLPSSGLEKVGAAPNRRGTSVSFIPDTE 186

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IFG+   F  +RL ++ +SKAYL   V+  W C  E+      P +  F FPGGL  +L+
Sbjct: 187 IFGE-QKFKPSRLYRLARSKAYLFAGVEIRWKCAPELIADD-TPAEAVFQFPGGLADHLK 244

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESG 333
            ++ +R   +S  F+G  +      G VEWA+AW    +   + YCNTI T +GGTHE+G
Sbjct: 245 EQVGDRECATSAFFSGSQDFPD-AAGRVEWAVAWPLWSDGSYSWYCNTIPTPDGGTHEAG 303

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
           LR AL +GI+ + EL   K+A  I +DD++ S+  +LSVFIR+P+F  QTK +L S +A 
Sbjct: 304 LRAALVKGIRAFGELVGQKKAKDITADDIVTSSEIMLSVFIRDPQFQSQTKDRLTSPEAA 363

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLPG 451
           R VENA+RD FDHYL  +      LL +V++R +ERL+R++++EV RKTA   RKLRLPG
Sbjct: 364 RLVENAVRDHFDHYLSDHMERGKALLAYVLDRMDERLKRKQEKEVKRKTATNSRKLRLPG 423

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL DCS +   G E+F+VEGDSAGGSAKQAR+R  QA+LPLRGKILNVASA + KI  NQ
Sbjct: 424 KLTDCSNDDPEGAEIFLVEGDSAGGSAKQARDRKTQAILPLRGKILNVASANTAKILANQ 483

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I D++ ALGC TR     ++LRYE+++IMTDADVDGAHIA+LL+TFF+QEM +L+ + H
Sbjct: 484 EIADMILALGCGTRKDCNPDNLRYERIVIMTDADVDGAHIATLLMTFFFQEMPELVRRGH 543

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           L+L  PPL+R+  G KS+YA D+ H+++IL   K+    K+E+SRFKGLGEM   QL+ET
Sbjct: 544 LYLAQPPLYRLVAGGKSLYAKDDAHREEILS--KEFKGKKVEVSRFKGLGEMNPGQLRET 601

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD--VGT 686
            MD   R+L+RV +  D+   +  ++ +++LMGT    RF FIQE A+ +D+  +  
Sbjct: 602 TMDPKTRSLIRVTLPDDIEDRQQVRELVDRLMGTNPAHRFAFIQENAATVDEEAIDA 658


>gi|30263545|ref|NP_845922.1| DNA topoisomerase IV subunit B [Bacillus anthracis str. Ames]
 gi|47778193|ref|YP_020292.2| DNA topoisomerase IV subunit B [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186397|ref|YP_029649.1| DNA topoisomerase IV subunit B [Bacillus anthracis str. Sterne]
 gi|65320876|ref|ZP_00393835.1| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), B subunit [Bacillus anthracis str. A2012]
 gi|165871023|ref|ZP_02215674.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0488]
 gi|167636468|ref|ZP_02394766.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0442]
 gi|167640560|ref|ZP_02398822.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0193]
 gi|170688415|ref|ZP_02879623.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0465]
 gi|170708114|ref|ZP_02898561.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0389]
 gi|177652461|ref|ZP_02934928.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0174]
 gi|190565061|ref|ZP_03017982.1| DNA topoisomerase IV, B subunit [Bacillus anthracis Tsiankovskii-I]
 gi|227813571|ref|YP_002813580.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. CDC 684]
 gi|228916227|ref|ZP_04079797.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228934869|ref|ZP_04097700.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229604304|ref|YP_002867790.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0248]
 gi|254686164|ref|ZP_05150023.1| DNA topoisomerase IV subunit B [Bacillus anthracis str. CNEVA-9066]
 gi|254726069|ref|ZP_05187851.1| DNA topoisomerase IV subunit B [Bacillus anthracis str. A1055]
 gi|254738637|ref|ZP_05196340.1| DNA topoisomerase IV subunit B [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744805|ref|ZP_05202483.1| DNA topoisomerase IV subunit B [Bacillus anthracis str. Kruger B]
 gi|254752955|ref|ZP_05204991.1| DNA topoisomerase IV subunit B [Bacillus anthracis str. Vollum]
 gi|254759227|ref|ZP_05211253.1| DNA topoisomerase IV subunit B [Bacillus anthracis str. Australia
           94]
 gi|301055084|ref|YP_003793295.1| DNA topoisomerase IV subunit B [Bacillus anthracis CI]
 gi|30258180|gb|AAP27408.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. Ames]
 gi|47551898|gb|AAT32767.2| DNA topoisomerase IV, B subunit [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49180324|gb|AAT55700.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. Sterne]
 gi|164713234|gb|EDR18760.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0488]
 gi|167511428|gb|EDR86812.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0193]
 gi|167528127|gb|EDR90919.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0442]
 gi|170126922|gb|EDS95802.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0389]
 gi|170667585|gb|EDT18340.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0465]
 gi|172082135|gb|EDT67202.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0174]
 gi|190564378|gb|EDV18342.1| DNA topoisomerase IV, B subunit [Bacillus anthracis Tsiankovskii-I]
 gi|227007627|gb|ACP17370.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. CDC 684]
 gi|228824769|gb|EEM70570.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228843425|gb|EEM88503.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229268712|gb|ACQ50349.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0248]
 gi|300377253|gb|ADK06157.1| DNA topoisomerase IV subunit B [Bacillus cereus biovar anthracis
           str. CI]
          Length = 654

 Score =  600 bits (1547), Expect = e-169,   Method: Composition-based stats.
 Identities = 241/651 (37%), Positives = 361/651 (55%), Gaps = 36/651 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AG+ + I V + 
Sbjct: 7   QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V+D GRG+P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 67  KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L VT+ R   I+ Q+F  G +P++ LEK  K +   GT + F+PD  IF     
Sbjct: 125 NALSEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 182

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L +  +  A+L   +K     ++   E       + F++  G++ ++    E + 
Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DVFHYETGIEAFVSYLNEEKD 235

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I   +     E+ G      E A  + +     I S+ N + T +GGTHE+G + A+TR
Sbjct: 236 SIHPVV-YFTGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA       ++  ++   D+      I+SV + E   +F GQTK KL + +A+ ++
Sbjct: 292 VFNEYARKVALLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSI 351

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453
           +  + +   ++L +NP  AT L+   I+ ++ R   RK RE  R    +K     L GKL
Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I
Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A+G    +++  ED+ Y+KV+IMTDAD DGAHI  LLLTFFY+ M  LIE   +F
Sbjct: 472 NTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G        YA  +E    + ++  K       + R+KGLGEM A QL 
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDSVTKKVGK----GYMLQRYKGLGEMNADQLW 587

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV+I+         +  +  LMG K + R K+I+    F
Sbjct: 588 ETTMNPETRTLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIERNVQF 634


>gi|295837751|ref|ZP_06824684.1| DNA gyrase subunit B [Streptomyces sp. SPB74]
 gi|197699827|gb|EDY46760.1| DNA gyrase subunit B [Streptomyces sp. SPB74]
          Length = 682

 Score =  600 bits (1547), Expect = e-169,   Method: Composition-based stats.
 Identities = 254/687 (36%), Positives = 381/687 (55%), Gaps = 28/687 (4%)

Query: 20  SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79
           + + +      D     + SA  +YDA++I +LEGL+ VR RPGMYIG T E+ LHHL  
Sbjct: 2   AAESEAGAVSGDVSRETSGSAETSYDANAITVLEGLDAVRKRPGMYIGSTGERGLHHLVQ 61

Query: 80  EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139
           EV+DN++DE +AG+A+ I+V++  +G + VVDNGRGIPV   P    K  +E++LT LHA
Sbjct: 62  EVVDNSVDEALAGHADTIDVTILPDGGVRVVDNGRGIPVGIVP-SEGKPAVEVVLTVLHA 120

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKF    Y +SGGLHGVG+SVVNALS  + V V     I++Q++ RG P +PL  + + 
Sbjct: 121 GGKFGGGGYAVSGGLHGVGVSVVNALSTRVEVEVKTDGHIWTQQYERGAPTAPL-HQGEA 179

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE--------- 250
             + GT +TF  D  +F     +    L +  Q  A+L+  +    + ++E         
Sbjct: 180 TEEHGTSVTFWADGDVFET-TEYSFETLARRFQEMAFLNKGLTIKLTDERESAKATVGAD 238

Query: 251 -----IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
                 AE+        +++ GG+  +++     +  +          +      +VE A
Sbjct: 239 SAEVVDAEEPPEARTVTYHYEGGIVDFVKYLNSRKGEVIHPSVIDVEAEDKEKLLSVEVA 298

Query: 306 IAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDL 362
           + W       + S+ NTI T EGGTHE G R ALT  + KYA   +   ++  ++  DD+
Sbjct: 299 MQWNAGYTEGVYSFANTIHTHEGGTHEEGFRGALTTIVNKYARDKKLLREKDGNLTGDDI 358

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
                 I+SV + EP+F GQTKTKL + +A+  V+  + +    +  +NP EA+ ++   
Sbjct: 359 REGLTAIISVKLGEPQFEGQTKTKLGNTEARTFVQKIVYERLADWFDRNPNEASDIIRKG 418

Query: 423 IERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
           I  +  R+  RK R++ R+   +    LPGKL+DC  N     E+FIVEGDSAGGSAK  
Sbjct: 419 ISAATARVAARKARDLTRRKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSG 478

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541
           R+   QA+LP+RGKILNV  A  +KI +NQ+I  L+ A G      +  E LRY K+I+M
Sbjct: 479 RDPMYQAILPIRGKILNVEKARVDKILHNQEIQALISAFGAGVHEDFDIEKLRYHKIILM 538

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKI 600
            DADVDG HI +LLLTF ++ M  L+E  H++L  PPL++I  G   V YA+ +  +  +
Sbjct: 539 ADADVDGQHINTLLLTFLFRFMRPLVESGHVYLSRPPLYKIKWGKDDVDYAYSDRERDAL 598

Query: 601 LEEFKKHGKGKIE--ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           +   +++GK   E  + RFKGLGEM A +L+ T MD + R L +V ++          D 
Sbjct: 599 IALGRENGKRLREGAVQRFKGLGEMDAEELRVTTMDQDHRVLGQVTLDD----AAQADDL 654

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            + LMG   + R +FIQ  A  +  + 
Sbjct: 655 FSVLMGEDVEARRQFIQRNAKDVRFLD 681


>gi|260426009|ref|ZP_05779988.1| DNA topoisomerase IV, B subunit [Citreicella sp. SE45]
 gi|260420501|gb|EEX13752.1| DNA topoisomerase IV, B subunit [Citreicella sp. SE45]
          Length = 652

 Score =  600 bits (1547), Expect = e-169,   Method: Composition-based stats.
 Identities = 348/650 (53%), Positives = 446/650 (68%), Gaps = 10/650 (1%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + +  YDASSI +LEGLEPVR RPGMYIGGTDE+ALHHL +EV+DN+MDE +AG+AN IE
Sbjct: 9   TETTTYDASSIEVLEGLEPVRKRPGMYIGGTDERALHHLVAEVLDNSMDEAVAGHANRIE 68

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V L  +  LT+ DNGRGIP++ HPKFP KS LE+IL TLHAGGKF    YE SGGLHGVG
Sbjct: 69  VELHEDYALTIRDNGRGIPIDPHPKFPGKSALEVILCTLHAGGKFSGKAYETSGGLHGVG 128

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALSD + V VAR   +F Q+FSRGIPL  +EK     N+RGT +TF  D +IF  
Sbjct: 129 ASVVNALSDSMVVQVARNKELFEQRFSRGIPLGGVEKIGAAPNRRGTTVTFHADEQIF-G 187

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F  ARL KM +SKAYL   V+  W   K   E    P +  F+FPGGL  YL   + 
Sbjct: 188 HHRFKPARLFKMVRSKAYLFSGVEIRW---KSAIEDGETPTEATFHFPGGLADYLSETMN 244

Query: 279 NRSLISSEIFTG--KTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLR 335
             S  + + F G    ++K    G VEWAI W    +  I SYCNT+ T EGGTHE+G  
Sbjct: 245 GSSTYADKPFAGTVDFKEKFQTPGKVEWAINWTPSRDGFIQSYCNTVPTPEGGTHEAGFW 304

Query: 336 VALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            A+ +GI+ Y EL  N++A  I  DDL+     ++S FIREPEF GQTK +L + +AQR 
Sbjct: 305 SAILKGIRAYGELVNNRKASQITRDDLITGGCALVSCFIREPEFVGQTKDRLATTEAQRL 364

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           VE A+RD FD++L  +   A  +L++++ R+EERLRRR+++E  RK+A +KLRLPGKL D
Sbjct: 365 VEGAVRDHFDNWLASDTKSAGAILDFLVLRAEERLRRRQEKETARKSATKKLRLPGKLTD 424

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C+     GTELFIVEGDSAGGSAK AR R  QA+LPL+GKILNV  A S K+ +N +I D
Sbjct: 425 CTAKSREGTELFIVEGDSAGGSAKGARFRETQALLPLKGKILNVLGAASNKLTSNAEIRD 484

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           L +ALG    +++  +DLRYEK+IIMTDADVDGAHIASLL+TFFY +M  LI+Q HL+L 
Sbjct: 485 LCEALGVGLGTKFSLDDLRYEKIIIMTDADVDGAHIASLLMTFFYTQMRPLIDQGHLYLA 544

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+R+TQG + +Y  D+  K++ + +    GKGKI++ RFKGLGEM A  LKET MD 
Sbjct: 545 CPPLYRLTQGARRIYVADDAEKEE-MLKKGLGGKGKIDVQRFKGLGEMDAKDLKETTMDP 603

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             R L+RV I++D     +T D + +LMG K + RF++IQE A F+ ++ 
Sbjct: 604 ATRKLIRVTIDEDE--PGETGDLVERLMGKKPELRFQYIQENARFVAELD 651


>gi|49478289|ref|YP_037677.1| DNA topoisomerase IV subunit B [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52141939|ref|YP_084890.1| DNA topoisomerase IV subunit B [Bacillus cereus E33L]
 gi|196034146|ref|ZP_03101556.1| DNA topoisomerase IV, B subunit [Bacillus cereus W]
 gi|196038513|ref|ZP_03105822.1| DNA topoisomerase IV, B subunit [Bacillus cereus NVH0597-99]
 gi|218904724|ref|YP_002452558.1| DNA topoisomerase IV, B subunit [Bacillus cereus AH820]
 gi|228928649|ref|ZP_04091685.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228947212|ref|ZP_04109506.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228986686|ref|ZP_04146816.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229092562|ref|ZP_04223718.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock3-42]
 gi|229123114|ref|ZP_04252321.1| DNA topoisomerase 4 subunit B [Bacillus cereus 95/8201]
 gi|229157170|ref|ZP_04285250.1| DNA topoisomerase 4 subunit B [Bacillus cereus ATCC 4342]
 gi|49329845|gb|AAT60491.1| topoisomerase IV, subunit B [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51975408|gb|AAU16958.1| topoisomerase IV, subunit B [Bacillus cereus E33L]
 gi|195993220|gb|EDX57178.1| DNA topoisomerase IV, B subunit [Bacillus cereus W]
 gi|196030921|gb|EDX69519.1| DNA topoisomerase IV, B subunit [Bacillus cereus NVH0597-99]
 gi|218535726|gb|ACK88124.1| DNA topoisomerase IV, B subunit [Bacillus cereus AH820]
 gi|228626234|gb|EEK82981.1| DNA topoisomerase 4 subunit B [Bacillus cereus ATCC 4342]
 gi|228660408|gb|EEL16041.1| DNA topoisomerase 4 subunit B [Bacillus cereus 95/8201]
 gi|228690849|gb|EEL44624.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock3-42]
 gi|228773017|gb|EEM21453.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228812459|gb|EEM58786.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228830968|gb|EEM76569.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 654

 Score =  600 bits (1547), Expect = e-169,   Method: Composition-based stats.
 Identities = 241/651 (37%), Positives = 361/651 (55%), Gaps = 36/651 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AG+ + I V + 
Sbjct: 7   QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V+D GRG+P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 67  KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L VT+ R   I+ Q+F  G +P++ LEK  K +   GT + F+PD  IF     
Sbjct: 125 NALSEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 182

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L +  +  A+L   +K     ++   E       + F++  G++ ++    E + 
Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DVFHYETGIEAFVSYLNEEKD 235

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I   +     E+ G      E A  + +     I S+ N + T +GGTHE+G + A+TR
Sbjct: 236 SIHPVV-YFTGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA       ++  ++   D+      I+SV + E   +F GQTK KL + +A+ ++
Sbjct: 292 VFNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSI 351

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453
           +  + +   ++L +NP  AT L+   I+ ++ R   RK RE  R    +K     L GKL
Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I
Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A+G    +++  ED+ Y+KV+IMTDAD DGAHI  LLLTFFY+ M  LIE   +F
Sbjct: 472 NTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G        YA  +E    + ++  K       + R+KGLGEM A QL 
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDSVTKKVGK----GYMLQRYKGLGEMNADQLW 587

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV+I+         +  +  LMG K + R K+I+    F
Sbjct: 588 ETTMNPETRTLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIERNVQF 634


>gi|297193291|ref|ZP_06910689.1| DNA gyrase subunit B [Streptomyces pristinaespiralis ATCC 25486]
 gi|297151724|gb|EDY62302.2| DNA gyrase subunit B [Streptomyces pristinaespiralis ATCC 25486]
          Length = 688

 Score =  600 bits (1547), Expect = e-169,   Method: Composition-based stats.
 Identities = 252/686 (36%), Positives = 379/686 (55%), Gaps = 27/686 (3%)

Query: 20  SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79
           ++    +   P +PA  N   + +YDAS+I +LEGL+ VR RPGMYIG T E+ LHHL  
Sbjct: 9   ADSGNPNENTPSTPAGGNGEVTASYDASAITVLEGLDAVRKRPGMYIGSTGERGLHHLVQ 68

Query: 80  EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139
           EV+DN++DE +AG+A+ I+V++  +G + V+DNGRGIPV  HP    +  +E++LT LHA
Sbjct: 69  EVVDNSVDEAMAGHADTIDVTILADGGVRVIDNGRGIPVGIHP-VEKRPAVEVVLTVLHA 127

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKF    Y +SGGLHGVG+SVVNALS +L V +      ++Q++  G+P +PLE+ E  
Sbjct: 128 GGKFGGGGYAVSGGLHGVGVSVVNALSYKLAVEIRTDGYRWTQEYKSGVPTAPLEQHEAT 187

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------- 249
               GT +TF  D  IF     +    L +  Q  A+L+  +    + ++          
Sbjct: 188 TE-TGTSVTFWADGDIFET-TEYSFETLSRRFQEMAFLNKGLTLTLTDERESAKATAGAE 245

Query: 250 ---EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
              E  +        ++++ GG+  +++     +  +          +      +VE A+
Sbjct: 246 TGQEPEDLEQPARTVKYHYEGGIVDFVKYLNSRKGELIHPTVIDIEAEDRERMLSVEIAM 305

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLM 363
            W  +    + S+ NTI T EGGTHE G R ALT  + +YA   +   ++  ++  +D+ 
Sbjct: 306 QWNSQYTEGVYSFANTIHTHEGGTHEEGFRSALTGLVNRYAREKKLLREKDDNLSGEDIR 365

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                I+SV + EP+F GQTKTKL + +A+  V+  + +    +  +NP EA  ++   I
Sbjct: 366 EGLTAIISVKLGEPQFEGQTKTKLGNTEAKTFVQKVVHETLTDWFDRNPNEAADIIRKGI 425

Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           +    R+  RK R++ R+   +    LPGKL+DC  N     E+FIVEGDSAGGSAK  R
Sbjct: 426 QAQTARVAARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGR 485

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           N   QA+LP+RGKILNV  A  +KI  N ++  L+ A G      +  E LRY K+I+M 
Sbjct: 486 NPMYQAILPIRGKILNVEKARIDKILQNTEVQALISAFGTGVHEDFDIEKLRYHKIILMA 545

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKIL 601
           DADVDG HI +LLLTF ++ M  L+E  H+FL  PPL++I  G     YA+ +  +  ++
Sbjct: 546 DADVDGQHINTLLLTFLFRFMRPLVEAGHVFLSRPPLYKIKWGRDDFEYAYSDRERDALV 605

Query: 602 EEFKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
           +  K+ GK   +  I RFKGLGEM A +L+ T MD + R L +V ++          D  
Sbjct: 606 DLGKRSGKRIKEDSIQRFKGLGEMNAEELRITTMDQDHRVLGQVTLDD----AAQADDLF 661

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
           + LMG   + R  FIQ  A  +  + 
Sbjct: 662 SVLMGEDVEARRSFIQRNAKDVRFLD 687


>gi|319939072|ref|ZP_08013436.1| DNA topoisomerase 4 subunit B [Streptococcus anginosus 1_2_62CV]
 gi|319812122|gb|EFW08388.1| DNA topoisomerase 4 subunit B [Streptococcus anginosus 1_2_62CV]
          Length = 649

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 242/653 (37%), Positives = 367/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLVWEIVDNAVDEALSGFGDKIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G LTV D+GRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  HKDGSLTVADHGRGMPVGMH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R  T++ Q+F + G P++ LEK  K  ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGTVYRQRFEKGGKPVTSLEKIGKAPKSKTGTKVTFMPDDTIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V    + ++         E  +F++  G++ ++    E+
Sbjct: 186 TDFKYNTISERLNESAFLLKNVHLSLTDER-------TGESVDFHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++      + E+ G     VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KETLTPV-LYFEGEEGG---FQVEVALQYNDGYSDNILSFVNNVRTKDGGTHETGLKSAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451
            V++ + D    +L++N   A+ L+   I+  + R   RK R+ +R     K       G
Sbjct: 355 AVDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRSGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    S +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 475 EINTMIYTIGAGVGSDFSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G        YA  +   + + ++F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKNEVVEYAWTDGELEDLRKKFGKGAM----LQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I+     L   +  +N LMG K   R K+I++   F
Sbjct: 591 LWETTMNPENRTLIRVTIDD----LARAERRVNVLMGDKVPPRRKWIEDNVKF 639


>gi|220923231|ref|YP_002498533.1| DNA topoisomerase IV subunit B [Methylobacterium nodulans ORS 2060]
 gi|219947838|gb|ACL58230.1| DNA topoisomerase IV, B subunit [Methylobacterium nodulans ORS
           2060]
          Length = 684

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 396/690 (57%), Positives = 503/690 (72%), Gaps = 12/690 (1%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           M D + DLF      +        K  + P +      +    YDAS+I +LEGLEPVR 
Sbjct: 1   MNDAARDLFGPGAKPAPVDPIAGPKRPK-PVAVPQPEPTPEAGYDASAIEVLEGLEPVRR 59

Query: 61  RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           RPGMYIGGTDEKALHHLF+EVIDNAMDE +AG+A+ IEV L   G LTV DNGRGIPV+ 
Sbjct: 60  RPGMYIGGTDEKALHHLFAEVIDNAMDEAVAGHASFIEVELAEGGILTVTDNGRGIPVDP 119

Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
           HPKFP KS LE+I+TTLHAGGKFD+  YE SGGLHGVG+SVVNALSD L V VAR+  ++
Sbjct: 120 HPKFPGKSALEVIMTTLHAGGKFDSKVYETSGGLHGVGVSVVNALSDLLEVEVARKQILY 179

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
            Q FSRG+P   LE+   V+N+RGT++ F PDP+IFG    F+  RL KM +SKAYL G 
Sbjct: 180 RQTFSRGLPQGGLEQVGPVQNRRGTKVRFHPDPQIFGA-LTFEPRRLFKMARSKAYLFGG 238

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFY-FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
           V+  W C   + E       E  + FP GLK YL  +++ + L++  +FTGK  K G+H 
Sbjct: 239 VEIRWRCAPALLEGVANVPAEAVHRFPAGLKDYLAREIDGKELVTDGLFTGKITKPGSH- 297

Query: 300 GTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISI 357
           G++EWA+AW   ++   +SYCNT+ T EGGTHESGLR+AL RG++ +AE     KR  ++
Sbjct: 298 GSLEWAVAWLANDDGFSSSYCNTVPTPEGGTHESGLRIALLRGLRDHAERVGQVKRMQAV 357

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
            +DD+M +   +LSVFIREPEF GQTK KL +L+A R VE A+RD FDH+L  +P +A +
Sbjct: 358 TTDDVMATCAAMLSVFIREPEFQGQTKDKLATLEASRIVEAAVRDAFDHWLAASPTQANR 417

Query: 418 LLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           LL+WVI+R+EERLRRR+++EV RKTA RKLRLPGKLADCS+  A G+E+FIVEGDSAGGS
Sbjct: 418 LLDWVIDRAEERLRRRQEKEVARKTATRKLRLPGKLADCSKAGAAGSEIFIVEGDSAGGS 477

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AKQAR+R+ QAVLPLRGKILNVASA  +K+  NQ + DL QALGC T + YRE+DLRYEK
Sbjct: 478 AKQARDRATQAVLPLRGKILNVASASRDKLGANQLLSDLTQALGCGTGAHYREDDLRYEK 537

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           VIIMTDADVDGAHIASLL+TFFY++M  LIE+ HL+L  PPL+R+TQG+KS YA D+ HK
Sbjct: 538 VIIMTDADVDGAHIASLLITFFYRQMPRLIEKGHLYLAVPPLYRLTQGSKSAYARDDRHK 597

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           +++++   K+G  K+EI RFKGLGEM+  QLKET MD  KRTLLRV + +   + + T D
Sbjct: 598 EQLIKTVFKNG--KVEIGRFKGLGEMMPGQLKETTMDPAKRTLLRVAVLE--EAREATGD 653

Query: 658 SINKLMGTKADERFKFIQERASFID--DVG 685
           ++ +LMG K + RF FI ERA+F D  ++ 
Sbjct: 654 TVERLMGNKPEARFAFISERAAFADEAELD 683


>gi|302391744|ref|YP_003827564.1| DNA gyrase subunit B [Acetohalobium arabaticum DSM 5501]
 gi|302203821|gb|ADL12499.1| DNA gyrase subunit B [Acetohalobium arabaticum DSM 5501]
          Length = 637

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 251/647 (38%), Positives = 372/647 (57%), Gaps = 22/647 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y+A  I++LEGLE VR RPGMYIG T  K LHHL  E +DN++DE +AG+   I+V + 
Sbjct: 8   DYNAEQIQVLEGLEAVRKRPGMYIGSTGTKGLHHLVWEAVDNSIDEFLAGHGEEIKVKIK 67

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
               ++V D GRGIPVE HP        +++LTTLHAGGKFD+S Y++SGGLHGVGISVV
Sbjct: 68  EGSIISVEDQGRGIPVEVHP-DKKLPAAQLVLTTLHAGGKFDSSGYKVSGGLHGVGISVV 126

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+ L +T+ R    ++Q++ +G+P++  EK        GT+I F+PD  IF +   +
Sbjct: 127 NALSEWLELTIWRNGYTYTQQYEKGVPVTEFEKSNSTTK-TGTKIEFKPDEDIFDNV-KY 184

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L    Q  A+L+  +K      +   EK        + + GGL+ ++    ++R L
Sbjct: 185 KFDVLANRLQESAFLNKGLKISLVDTRPGLEKEVT-----YQYDGGLEAFIDYLNQDRDL 239

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTRG 341
           +  +I   + E   T+   VE A  +    N  I S+ N I T +GG H +G + ALTR 
Sbjct: 240 LHDDIVYLEEEVDDTY---VEVAFQYNKSFNERIYSFANNINTHDGGYHLTGFKTALTRA 296

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
              YA+      K    +   DL      +++V + EP+F GQTK KL + + +  VE A
Sbjct: 297 FNNYAKDNNLLKKSDPKLTGRDLREGLTAVVNVKLTEPQFEGQTKAKLGNSEIRSVVEGA 356

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQ 458
           + +  + YL ++   A +++   +E  + R   +K      RK  +    LPGKL+DCS 
Sbjct: 357 VYNYLNQYLPRHHDMAKEVINKALEAVKARKAAKKAKELTKRKGVLNNNSLPGKLSDCSS 416

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
             +  +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A   KI NN +I  ++ 
Sbjct: 417 RKSEESELYLVEGDSAGGSAKQGRNRDFQAILPLKGKILNVERARLNKIINNNEIAAIIT 476

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG     ++  + LRY K+IIMTDADVDGAHI +L+LT FY+ M +LI + H+++  PP
Sbjct: 477 ALGTGIGEEFNIDKLRYHKIIIMTDADVDGAHICTLILTLFYRYMPELIREGHVYVAQPP 536

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+++T      Y + ++  QK L +     + K+ I R+KGLGEM  SQL ET M+   R
Sbjct: 537 LYKVTYRGDEEYIYTDKQLQKYLADL---DRSKVSIQRYKGLGEMNPSQLWETTMNPENR 593

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            L  + ++++    ++      +LMG+KA  R +FI   A    ++ 
Sbjct: 594 KLQEIMVDEE----READSIFTRLMGSKAKLRREFIMANADLASNLD 636


>gi|254453955|ref|ZP_05067392.1| DNA topoisomerase IV, B subunit [Octadecabacter antarcticus 238]
 gi|198268361|gb|EDY92631.1| DNA topoisomerase IV, B subunit [Octadecabacter antarcticus 238]
          Length = 703

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 347/670 (51%), Positives = 448/670 (66%), Gaps = 11/670 (1%)

Query: 19  SSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLF 78
           +  +  ++ +   +   + Q+ S+ YDASSI +LE +E VR+RPGMYIGG D++ALHH+ 
Sbjct: 41  NMTQPTRAEQTMANDLLSGQTPSN-YDASSIEVLEDMEHVRLRPGMYIGGKDDRALHHMV 99

Query: 79  SEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLH 138
           +E++DN+MDE +AG+A  IEV L  NG +TV DNGRGIPV  HPK PNKS LE+I  TL+
Sbjct: 100 AEIVDNSMDEAVAGHATWIEVELHANGHVTVRDNGRGIPVGMHPKLPNKSALEVIFCTLN 159

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKF   +Y+ SGGLHGVG SVVNALSD L V VA    +F  +FSRG+P +PL K   
Sbjct: 160 AGGKFSGDSYQTSGGLHGVGSSVVNALSDHLRVEVAINKELFMMEFSRGVPQAPLAKIGA 219

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             N+RGT +TF PDP+IFG       ARL KM +SKAYL   V+  W  D    E    P
Sbjct: 220 APNRRGTAVTFHPDPEIFGS-LELKPARLFKMARSKAYLFSGVEIRWKTDINDGE---TP 275

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE--KKGTHRGTVEWAIAW-CEENPEI 315
           ++  F FPGGL  YL   L   +  S + F G  +   K    G VEWAI W    +  I
Sbjct: 276 QEATFKFPGGLADYLNETLAGATTYSDKPFAGTVDFTDKFNVPGKVEWAINWTPTRDGFI 335

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIR 375
            SYCNT+ T EGGTHE G   A+ +GIK Y E   NK+A +I  +DL   A  ++S FIR
Sbjct: 336 QSYCNTVPTPEGGTHEQGFWAAVLKGIKSYGERVNNKKATNITREDLTTGAGALVSCFIR 395

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           +PEF GQTK +L + DAQR V+ A+ D FD++L  +   A  +L++++ RSEERLRR+++
Sbjct: 396 DPEFVGQTKDRLATTDAQRMVQLAVADHFDNWLAADTKSAGAILDFLVLRSEERLRRKQE 455

Query: 436 REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           +E +RKTA +KLRLPGKL DCS     GTELFIVEGDSAGGSAK ARNR NQA+LPLRGK
Sbjct: 456 KETSRKTATQKLRLPGKLTDCSSKTRDGTELFIVEGDSAGGSAKMARNRKNQALLPLRGK 515

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLL 555
           ILNV  A S KI  N +I DL QALG +  +++  +DLRY+KVIIMTDADVDGAHIA+LL
Sbjct: 516 ILNVLGAASSKIGTNSEISDLTQALGVQLGAKFNVDDLRYDKVIIMTDADVDGAHIAALL 575

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615
           +TFF+ +M  +I+  HL+L  PPLFR+TQG +  Y  DE  K  +L      G GK+++S
Sbjct: 576 MTFFFSQMRPMIDAGHLYLACPPLFRVTQGARREYCLDEAEKNAVLAR-GLGGSGKMDVS 634

Query: 616 RFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675
           RFKGLGEM A  LKET MD   R L+RV I++D     +T D + +LMG K + RF++IQ
Sbjct: 635 RFKGLGEMDAKDLKETTMDPTSRKLIRVSIDEDE--AGETADLVERLMGKKPEMRFQYIQ 692

Query: 676 ERASFIDDVG 685
           E A F+ ++ 
Sbjct: 693 ENAKFVLELD 702


>gi|47570276|ref|ZP_00240926.1| DNA topoisomerase IV, B subunit [Bacillus cereus G9241]
 gi|47553067|gb|EAL11468.1| DNA topoisomerase IV, B subunit [Bacillus cereus G9241]
          Length = 654

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 241/651 (37%), Positives = 361/651 (55%), Gaps = 36/651 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AG+ + I V + 
Sbjct: 7   QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V+D GRG+P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 67  KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L VT+ R   I+ Q+F  G +P++ LEK  K +   GT + F+PD  IF     
Sbjct: 125 NALSEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 182

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L +  +  A+L   +K     ++   E       + F++  G++ ++    E + 
Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DVFHYETGIEAFVSYLNEEKD 235

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I   +     E+ G      E A  + +     I S+ N + T +GGTHE+G + A+TR
Sbjct: 236 AIHPVV-YFTGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA       ++  ++   D+      I+SV + E   +F GQTK KL + +A+ ++
Sbjct: 292 VFNEYARKVALLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSI 351

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453
           +  + +   ++L +NP  AT L+   I+ ++ R   RK RE  R    +K     L GKL
Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I
Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A+G    +++  ED+ Y+KV+IMTDAD DGAHI  LLLTFFY+ M  LIE   +F
Sbjct: 472 NTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G        YA  +E    + ++  K       + R+KGLGEM A QL 
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGK----GYMLQRYKGLGEMNADQLW 587

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV+I+         +  +  LMG K + R K+I+    F
Sbjct: 588 ETTMNPETRTLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIERNVQF 634


>gi|118478841|ref|YP_895992.1| DNA topoisomerase IV subunit B [Bacillus thuringiensis str. Al
           Hakam]
 gi|225865579|ref|YP_002750957.1| DNA topoisomerase IV, B subunit [Bacillus cereus 03BB102]
 gi|229185832|ref|ZP_04313005.1| DNA topoisomerase 4 subunit B [Bacillus cereus BGSC 6E1]
 gi|118418066|gb|ABK86485.1| DNA topoisomerase IV subunit B [Bacillus thuringiensis str. Al
           Hakam]
 gi|225790247|gb|ACO30464.1| DNA topoisomerase IV, B subunit [Bacillus cereus 03BB102]
 gi|228597544|gb|EEK55191.1| DNA topoisomerase 4 subunit B [Bacillus cereus BGSC 6E1]
          Length = 654

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 240/651 (36%), Positives = 362/651 (55%), Gaps = 36/651 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AG+ + I V + 
Sbjct: 7   QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V+D GRG+P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 67  KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L VT+ R   I+ Q+F  G +P++ LEK  K +   GT + F+PD  IF     
Sbjct: 125 NALSEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 182

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L +  +  A+L   +K     ++   E       + F++  G++ ++    E + 
Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DVFHYETGIEAFVSYLNEEKD 235

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I   +     E+ G      E A  + +     I S+ N + T +GGTHE+G + A+TR
Sbjct: 236 SIHPVV-YFTGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA       ++  ++   D+      I+SV + E   +F GQTK KL + +A+ ++
Sbjct: 292 VFNEYARKVALLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSI 351

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453
           +  + +   ++L +NP  AT L+   I+ ++ R   RK RE  R    +K     L GKL
Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I
Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A+G    +++  ED+ Y+KV+IMTDAD DGAHI  LLLTFFY+ M  LIE   +F
Sbjct: 472 NTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G        YA  ++   ++ ++  K       + R+KGLGEM A QL 
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDDELDEVTKKVGK----GYMLQRYKGLGEMNADQLW 587

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV+I+         +  +  LMG K + R K+I+    F
Sbjct: 588 ETTMNPETRTLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIERNVQF 634


>gi|159043301|ref|YP_001532095.1| DNA topoisomerase IV subunit B [Dinoroseobacter shibae DFL 12]
 gi|157911061|gb|ABV92494.1| DNA topoisomerase IV, B subunit [Dinoroseobacter shibae DFL 12]
          Length = 654

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 347/659 (52%), Positives = 453/659 (68%), Gaps = 9/659 (1%)

Query: 29  IPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDE 88
             D  + A    +  YDASSI++LE +E VR+RPGMYIGG D++ALHH+ +E+IDN+MDE
Sbjct: 2   ANDLLSGARADTAATYDASSIQVLEDMEHVRLRPGMYIGGKDDRALHHMVAEIIDNSMDE 61

Query: 89  VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148
            +AG+A  IEV L  NG ++V DNGRGIP + HPK P+KS LE+I  TL+AGGKF   +Y
Sbjct: 62  AVAGHATWIEVELHANGHVSVRDNGRGIPTDPHPKTPDKSALEVIFCTLNAGGKFSGDSY 121

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           E SGGLHGVG SVVNALSD L V VAR   +++ +FSRG+P   L K     N+RGT +T
Sbjct: 122 ETSGGLHGVGSSVVNALSDHLRVEVARNRELYAMEFSRGVPQGKLAKIGAAPNRRGTAVT 181

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F PDP+IFG       ARL KM +SKAYL   V+  W   K   +    PE+  F+FPGG
Sbjct: 182 FHPDPEIFGS-LALKPARLFKMARSKAYLFSGVEIRW---KTAIDDGDTPEEATFHFPGG 237

Query: 269 LKTYLQTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDE 326
           L  YL   L   +  +   F+G    +K    G VEWAI W    +  I SYCNT+ T E
Sbjct: 238 LSDYLNETLGQAATYADAPFSGTVSFEKFGRPGKVEWAINWTPARDGFIQSYCNTVPTPE 297

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           GGTHE+G   A+ +GIK Y EL  N++A +I  +DL+  A  ++S FIREPEF GQTK +
Sbjct: 298 GGTHEAGFWAAILKGIKAYGELVSNRKASTITREDLITGAGALVSCFIREPEFVGQTKDR 357

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L +++AQR VENA+RD FD++L  +   A  +L++++ R+EERLRRR+++E  RK+A ++
Sbjct: 358 LATVEAQRMVENAVRDHFDNWLAADTKSAGAILDFLVLRAEERLRRRQEKETARKSATKR 417

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
           LRLPGKL DCS     GTELFIVEGDSAGGSAK AR+R  QA+LPLRGKILNV  A S K
Sbjct: 418 LRLPGKLVDCSATNRAGTELFIVEGDSAGGSAKMARDRKTQALLPLRGKILNVLGAASSK 477

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           + +NQ+I DL QALG    S++  EDLRY+K+IIMTDADVDGAHIASLL+TFF+ +M  +
Sbjct: 478 LGSNQEISDLTQALGVGLGSKFNIEDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPM 537

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           I+  HL+L  PPLFR+TQG K VY  DE  +   LE+    GKGKI++SRFKGLGEM A 
Sbjct: 538 IDAGHLYLACPPLFRLTQGAKRVYCLDEAERDAWLEK-GLGGKGKIDVSRFKGLGEMDAK 596

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            LK+T M+   R L+RV I++D     +T D + +LMG K ++RF++IQE A F++++ 
Sbjct: 597 DLKDTTMNPETRKLIRVSIDEDE--PGETGDLVERLMGKKPEKRFEYIQENARFVEELD 653


>gi|196044488|ref|ZP_03111723.1| DNA topoisomerase IV, B subunit [Bacillus cereus 03BB108]
 gi|206975544|ref|ZP_03236457.1| DNA topoisomerase IV, B subunit [Bacillus cereus H3081.97]
 gi|229197705|ref|ZP_04324425.1| DNA topoisomerase 4 subunit B [Bacillus cereus m1293]
 gi|196024523|gb|EDX63195.1| DNA topoisomerase IV, B subunit [Bacillus cereus 03BB108]
 gi|206746446|gb|EDZ57840.1| DNA topoisomerase IV, B subunit [Bacillus cereus H3081.97]
 gi|228585782|gb|EEK43880.1| DNA topoisomerase 4 subunit B [Bacillus cereus m1293]
 gi|324327495|gb|ADY22755.1| DNA topoisomerase IV subunit B [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 654

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 240/651 (36%), Positives = 362/651 (55%), Gaps = 36/651 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AG+ + I V + 
Sbjct: 7   QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V+D GRG+P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 67  KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L VT+ R   I+ Q+F  G +P++ LEK  K +   GT + F+PD  IF     
Sbjct: 125 NALSEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 182

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L +  +  A+L   +K     ++   E       + F++  G++ ++    E + 
Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DVFHYETGIEAFVSYLNEEKD 235

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I   +     E+ G      E A  + +     I S+ N + T +GGTHE+G + A+TR
Sbjct: 236 SIHPVV-YFTGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA       ++  ++   D+      I+SV + E   +F GQTK KL + +A+ ++
Sbjct: 292 VFNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSI 351

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453
           +  + +   ++L +NP  AT L+   I+ ++ R   RK RE  R    +K     L GKL
Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I
Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A+G    +++  ED+ Y+KV+IMTDAD DGAHI  LLLTFFY+ M  LIE   +F
Sbjct: 472 NTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G        YA  ++   ++ ++  K       + R+KGLGEM A QL 
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDDELDEVTKKVGK----GYMLQRYKGLGEMNADQLW 587

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV+I+         +  +  LMG K + R K+I+    F
Sbjct: 588 ETTMNPETRTLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIERNVQF 634


>gi|322373420|ref|ZP_08047956.1| DNA gyrase, B subunit [Streptococcus sp. C150]
 gi|321278462|gb|EFX55531.1| DNA gyrase, B subunit [Streptococcus sp. C150]
          Length = 650

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 257/651 (39%), Positives = 375/651 (57%), Gaps = 22/651 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +  +  YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A  I
Sbjct: 9   EEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFATHI 68

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +  +TVVD+GRGIPV    K   +  +E + T LHAGGKF    Y++SGGLHGV
Sbjct: 69  QVFIEPDNSITVVDDGRGIPVGIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS +L V V +   I  Q++ RG+ +  L          GT + F PDP+IF 
Sbjct: 128 GSSVVNALSTQLDVKVYKNGHIHFQEYKRGVVVDDLAIIGDTEKH-GTTVHFTPDPEIFQ 186

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   FD  +L K  Q  A+L+  ++   +  +E  E     +++ +++ GG+ +Y++   
Sbjct: 187 ETTEFDFGKLAKRIQELAFLNKGLRISITDKREGLE-----QEKHYHYEGGITSYVKYIN 241

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           EN+ +I  E      E  G    +VE A+ +       + S+ N I T EGGTHE G R 
Sbjct: 242 ENKDVIFDEPIYTDGEMDGI---SVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRT 298

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA   +    +  ++  DD+      I+SV    P+F GQTKTKL + +  +
Sbjct: 299 ALTRVINDYARQNKILKDKDDNLTGDDVREGLTAIISVKHPNPQFEGQTKTKLGNSEVVK 358

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
                  +    +L++NP  A K++E  I  S+ R+  ++ RE   +K+ +    LPGKL
Sbjct: 359 ITNRLFSEALSRFLLENPAIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS N A   ELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I
Sbjct: 419 ADCSSNNAEMNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEI 478

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             L  A+G    +++     RY K++IMTDADVDGAHI +LLLT  Y+ M  ++E  +++
Sbjct: 479 RSLFTAMGTGFGAEFDVSKARYHKLVIMTDADVDGAHIRTLLLTLIYRFMRPILEAGYVY 538

Query: 574 LISPPLFRITQGTKSV-YAH---DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PP++ +  G++   Y     ++E K +   E    G+ K  + R+KGLGEM   QL 
Sbjct: 539 IAQPPIYGVKVGSEIKEYIQPGVNQEEKLRAALENYSVGRSKPTVQRYKGLGEMDDHQLW 598

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET MD   R + RV ++       +     + LMG K + R +FI+E A +
Sbjct: 599 ETTMDPVNRLMARVSVDD----AAEADKIFDMLMGDKVEPRREFIEENAVY 645


>gi|90960995|ref|YP_534911.1| DNA gyrase subunit B [Lactobacillus salivarius UCC118]
 gi|301300484|ref|ZP_07206683.1| DNA gyrase, B subunit [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|90820189|gb|ABD98828.1| DNA gyrase subunit B [Lactobacillus salivarius UCC118]
 gi|300213943|gb|ADJ78359.1| DNA gyrase subunit B [Lactobacillus salivarius CECT 5713]
 gi|300851931|gb|EFK79616.1| DNA gyrase, B subunit [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 652

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 249/656 (37%), Positives = 369/656 (56%), Gaps = 22/656 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +  +  YDAS I++LEGLE VR RPGMYIG T  + LHHL  E+IDN +DE +AG+A+ 
Sbjct: 11  QEEKAKEYDASQIQVLEGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNGIDEALAGFADE 70

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V+++ +  +TV DNGRGIPV+   K   +  LE + T LHAGGKF    Y++SGGLHG
Sbjct: 71  INVTVEEDNSITVKDNGRGIPVDIQKK-TGRPALETVFTVLHAGGKFGGGGYKVSGGLHG 129

Query: 157 VGISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPDP 213
           VG SVVNALS  L V V R     ++   F  G   + +    K      GT + F+PDP
Sbjct: 130 VGASVVNALSTNLDVKVMREDDENVYGMDFKLGKVATSMTVVGKCPRHEHGTIVHFKPDP 189

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF +   +D   L K  +  A+L+  +K      +        P  EEF++ GG+K Y+
Sbjct: 190 DIFTETTTYDINVLTKRIRELAFLNKGLKITIDDKR-----QEEPTHEEFHYAGGIKHYI 244

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHES 332
           +   + + +I  E    + E+ G    TVE A+ +  + +  + S+ N I T EGGTHES
Sbjct: 245 EFLNKGKEVIFPEPIYVEGEQNGI---TVEVALQYTNDFHSNLLSFTNNIHTYEGGTHES 301

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G + ALTR I  Y   +    +   ++  +D+      ++S+    P+F GQTKTKL + 
Sbjct: 302 GFKTALTRVINDYGRKSGLIKENDANLSGEDVREGLTAVVSIKHPNPQFEGQTKTKLGNS 361

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRL 449
           DA++  +    + F+ ++++NP  A +++E  ++        +R +    +K  +    L
Sbjct: 362 DARKVTDKLFSETFNKFMLENPTVAKQIVEKGLLAAKARIAAKRAREVTRKKNGLEISNL 421

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLAD +      +ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I  
Sbjct: 422 PGKLADNTSKDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKATIDRILA 481

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N++I  L  ALG     ++      Y K+IIMTDADVDGAHI +LLLT  Y+ M  +++ 
Sbjct: 482 NEEIRSLFTALGTGFGEEFDVSKANYHKLIIMTDADVDGAHIRTLLLTLIYRFMKPMLDA 541

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
            ++++  PPL+++ QG    Y   +E    +L         K  I R+KGLGEM A QL 
Sbjct: 542 GYVYIAQPPLYQVRQGKMIKYIDSDEELNDVLGSLPPS--PKPVIQRYKGLGEMDAEQLW 599

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           ET M+   R LLRVE++      ++  +    LMG     R +FI++ A+F++++ 
Sbjct: 600 ETTMNPENRRLLRVELSD----AEEANEVFEMLMGDHVGPRRQFIEDNATFVNNLD 651


>gi|307708545|ref|ZP_07645010.1| DNA topoisomerase IV, B subunit [Streptococcus mitis NCTC 12261]
 gi|307615461|gb|EFN94669.1| DNA topoisomerase IV, B subunit [Streptococcus mitis NCTC 12261]
          Length = 647

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 240/653 (36%), Positives = 365/653 (55%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   I+ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGAIYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V    + ++         E  EF++  G++ ++    E+
Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDER-------TDEAIEFHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++      + E  G     VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KETLTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 475 EINTMIYTIGAGVGADFSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +++ ++  K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQLGK----GATLQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|227891673|ref|ZP_04009478.1| DNA gyrase subunit B [Lactobacillus salivarius ATCC 11741]
 gi|227866476|gb|EEJ73897.1| DNA gyrase subunit B [Lactobacillus salivarius ATCC 11741]
          Length = 652

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 249/656 (37%), Positives = 369/656 (56%), Gaps = 22/656 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +  +  YDAS I++LEGLE VR RPGMYIG T  + LHHL  E+IDN +DE +AG+A+ 
Sbjct: 11  QEEKAKEYDASQIQVLEGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNGIDEALAGFADE 70

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V+++ +  +TV DNGRGIPV+   K   +  LE + T LHAGGKF    Y++SGGLHG
Sbjct: 71  INVTVEEDNSITVKDNGRGIPVDIQKK-TGRPALETVFTVLHAGGKFGGGGYKVSGGLHG 129

Query: 157 VGISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPDP 213
           VG SVVNALS  L V V R     ++   F  G   + +    K      GT + F+PDP
Sbjct: 130 VGASVVNALSTNLDVKVMREDDENVYGMDFKLGKVATSMTVVGKCPRHEHGTIVHFKPDP 189

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF +   +D   L K  +  A+L+  +K      +        P  EEF++ GG+K Y+
Sbjct: 190 DIFTETTTYDINVLTKRIRELAFLNKGLKITIDDKR-----QEEPTHEEFHYAGGIKHYI 244

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHES 332
           +   + + +I  E    + E+ G    TVE A+ +  + +  + S+ N I T EGGTHES
Sbjct: 245 EFLNKGKEVIFPEPIYVEGEQNGI---TVEVALQYTNDFHSNLLSFTNNIHTYEGGTHES 301

Query: 333 GLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G + ALTR I  Y   +   +    ++  +D+      ++S+    P+F GQTKTKL + 
Sbjct: 302 GFKTALTRVINDYGRKSGLIKENDANLSGEDVREGLTAVVSIKHPNPQFEGQTKTKLGNS 361

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRL 449
           DA++  +    + F+ ++++NP  A +++E  ++        +R +    +K  +    L
Sbjct: 362 DARKVTDKLFSETFNKFMLENPTVAKQIVEKGLLAAKARIAAKRAREVTRKKNGLEISNL 421

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLAD +      +ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I  
Sbjct: 422 PGKLADNTSKDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKATIDRILA 481

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N++I  L  ALG     ++      Y K+IIMTDADVDGAHI +LLLT  Y+ M  +++ 
Sbjct: 482 NEEIRSLFTALGTGFGEEFDVSKANYHKLIIMTDADVDGAHIRTLLLTLIYRFMKPMLDA 541

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
            ++++  PPL+++ QG    Y   +E    +L         K  I R+KGLGEM A QL 
Sbjct: 542 GYVYIAQPPLYQVRQGKMIKYIDSDEELNDVLGSLPSS--PKPVIQRYKGLGEMDAEQLW 599

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           ET M+   R LLRVE++      ++  +    LMG     R +FI++ A+F++++ 
Sbjct: 600 ETTMNPENRRLLRVELSD----AEEANEVFEMLMGDHVGPRRQFIEDNATFVNNLD 651


>gi|240047186|ref|YP_002960574.1| DNA gyrase subunit B [Mycoplasma conjunctivae HRC/581]
 gi|239984758|emb|CAT04732.1| DNA gyrase subunit B [Mycoplasma conjunctivae]
          Length = 640

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 255/653 (39%), Positives = 364/653 (55%), Gaps = 22/653 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           +  NY ASSI+ LEGLEPVR RPGMYIGGT  + LHHL  E++DNA+DE +AG+AN I+V
Sbjct: 2   SQKNYSASSIQTLEGLEPVRKRPGMYIGGTGIQPLHHLIWEIVDNAVDEALAGFANQIDV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            +  +G++ V DNGRGIP + HPK    S  E++LT LHAGGKFD S+Y++SGGLHGVG 
Sbjct: 62  VITKDGYVQVSDNGRGIPTDIHPKH-GVSAAEVVLTILHAGGKFDGSSYKVSGGLHGVGA 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV--RNKRGTRITFRPDPKIFG 217
           SVVNALS  L V + R   ++ Q+F  G       K       N+ GT I F PD  I  
Sbjct: 121 SVVNALSKHLQVWIKRDGKLYFQEFRDGGQKVDNLKVIDSVSENQTGTTIKFIPDFTIMD 180

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F    +    +  AYL+  +K      +   +K        F F GG+  Y+    
Sbjct: 181 KN-EFRLDIIQDRLKQTAYLTKGLKFTIDDQRTNFQKT-------FLFEGGIFDYISELS 232

Query: 278 ENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
           +    +  EI   + E     +   VE A+ +  E+  E+ SY N I   EGGTHE+GL 
Sbjct: 233 KGYEHVHDEIIYVEDELSHNENHIKVEVALRYVNEDRSELLSYTNNIYNREGGTHEAGLF 292

Query: 336 VALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            AL+R +  YA   +  +  +     +D+      ++S+   +P F GQTK KL S + +
Sbjct: 293 DALSRILNNYAFENKFFKNENEKFSKEDIKDGLFAVISIKHSDPIFEGQTKGKLNSKEVR 352

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGK 452
           +       + F+ +LV+NP +A K++E  +   + R      RE   RK+      LPGK
Sbjct: 353 QITNKVFSEVFERFLVENPEQARKIIERNLISQKARKAAESAREAVKRKSPFDVSSLPGK 412

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS   A   EL+IVEG+SAGGSAK  R+R  QA+LPLRGK++N      EK+  N++
Sbjct: 413 LADCSVKNAQMAELYIVEGNSAGGSAKMGRDRHFQAILPLRGKVINSQRTNLEKVLKNEE 472

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I+ L+ A G     ++    +RY K+IIMTDAD DG+HI +LLLTF Y+    LIE   +
Sbjct: 473 ILSLITAFGTGIGPEFNINKVRYHKIIIMTDADSDGSHIRTLLLTFLYRYFRPLIEYGLI 532

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL++I+   K VYA+ ++ K +I+ +  ++   K+ I R+KGLGEM   QL ET 
Sbjct: 533 YIAQPPLYKISANKKVVYAYSDKQKDEIIAKEFENN--KVTIQRYKGLGEMNPDQLWETT 590

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           MD   R + +V+I+               LMG +   R  FI+E A ++ ++ 
Sbjct: 591 MDPTTRKMYQVQIHDAF----IASQVFEALMGEEVQPRKVFIEENARYVKNLD 639


>gi|114767592|ref|ZP_01446327.1| DNA topoisomerase IV subunit B [Pelagibaca bermudensis HTCC2601]
 gi|114540370|gb|EAU43459.1| DNA topoisomerase IV subunit B [Roseovarius sp. HTCC2601]
          Length = 652

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 346/650 (53%), Positives = 450/650 (69%), Gaps = 10/650 (1%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + + +YDASSI +LEGLEPVR RPGMYIGGTDE+ALHHL +EV+DN+MDE +AG+AN IE
Sbjct: 9   TDTPDYDASSIEVLEGLEPVRKRPGMYIGGTDERALHHLVAEVLDNSMDEAVAGHANRIE 68

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V L G+  +T+ DNGRGIP++ HPKFP KS LE+IL TLHAGGKF    YE SGGLHGVG
Sbjct: 69  VELHGDYAVTIRDNGRGIPIDPHPKFPGKSALEVILCTLHAGGKFSGKAYETSGGLHGVG 128

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALSD + V VAR   +F Q+FSRGIP   +EK     N+RGT +TF  D +IFG 
Sbjct: 129 ASVVNALSDSMVVQVARNKELFEQRFSRGIPQGGVEKVGAAPNRRGTTVTFHADEQIFGS 188

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F  ARL KM +SKAYL   V+  W   K   +    P +  F+FPGGL  YL   L 
Sbjct: 189 -HRFKPARLFKMVRSKAYLFSGVEIRW---KSAIDDNETPLEATFHFPGGLSDYLTETLG 244

Query: 279 NRSLISSEIFTG--KTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLR 335
             S  S + F G    ++K    G VEWAI+W    +  I SYCNT+ T EGGTHE+G  
Sbjct: 245 TASTYSEKPFAGTVDFKEKFNTPGKVEWAISWTPSRDGFIQSYCNTVPTPEGGTHEAGFW 304

Query: 336 VALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            A+ +GI+ Y EL  N++A  I  DDL+     ++S FIREPEF GQTK +L + +AQR 
Sbjct: 305 AAILKGIRAYGELVNNRKASQITRDDLITGGCALVSCFIREPEFVGQTKDRLATTEAQRL 364

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           VE A+RD FD++L  +   A  +L++++ R+EERLRRR+++E  RK+A +KLRLPGKL D
Sbjct: 365 VEGAVRDHFDNWLAADTKSAGAILDFLVLRAEERLRRRQEKETARKSATKKLRLPGKLTD 424

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C+     GTELFIVEGDSAGGSAK AR R +QA+LPL+GKILNV  A S K+ +N +I D
Sbjct: 425 CTNKNREGTELFIVEGDSAGGSAKGARFRESQALLPLKGKILNVLGAASNKLTSNAEIRD 484

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           L +ALG    +++  +DLRYEK+IIMTDADVDGAHIA+LL+TFFY +M  LI+  HL++ 
Sbjct: 485 LCEALGVGLGTKFNVDDLRYEKIIIMTDADVDGAHIAALLMTFFYTQMRPLIDGGHLYMA 544

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+R+TQG + +Y  D+  K++ + +    GKGKI++ RFKGLGEM A  LKET MD 
Sbjct: 545 CPPLYRLTQGARRIYVADDAEKEE-MLKKGLGGKGKIDVQRFKGLGEMDAKDLKETTMDP 603

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             R L+RV I++D     +T D + +LMG K + RF++IQE A F++++ 
Sbjct: 604 ATRKLIRVTIDEDE--PGETGDLVERLMGKKPELRFQYIQENARFVEELD 651


>gi|321311453|ref|YP_004203740.1| DNA topoisomerase IV subunit B [Bacillus subtilis BSn5]
 gi|291484420|dbj|BAI85495.1| DNA topoisomerase IV subunit B [Bacillus subtilis subsp. natto
           BEST195]
 gi|320017727|gb|ADV92713.1| DNA topoisomerase IV subunit B [Bacillus subtilis BSn5]
          Length = 655

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 249/651 (38%), Positives = 370/651 (56%), Gaps = 36/651 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DEV+AG+ + I V + 
Sbjct: 8   DYNEDAIQVLEGLEAVRKRPGMYIGSTDARGLHHLVYEIVDNSVDEVLAGHGDHIIVKIH 67

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V D GRG+P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 68  KDNSISVQDRGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 125

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L VT+ R   ++ Q+F  G  P++ LEK  K +   GT   F+PDP +F     
Sbjct: 126 NALSEWLTVTIERDGFVYQQRFENGGKPVTSLEKIGKTKK-TGTLTHFKPDPTMFSTTT- 183

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L +  +  A+L   +K     ++         + E FY+  G++ ++    E + 
Sbjct: 184 YNFETLSERLRESAFLLKGLKIELIDER-------NDQHEVFYYENGIEAFVAYLNEEKD 236

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
           ++ SE+ + + E    H   V++A  + +     I S+ N + T +GGTHESG + A+TR
Sbjct: 237 VL-SEVVSFEGE---HHSIEVDFAFQFNDGYSENILSFVNNVRTKDGGTHESGAKTAMTR 292

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA       ++  ++   D+      I+SV I E   +F GQTK KL + +A+  V
Sbjct: 293 AFNEYARKVALLKEKDKNLEGTDIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAV 352

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKL 453
           +  + +   ++L +N   AT L++  I+ S+ R   RK RE  R    RK     L GKL
Sbjct: 353 DAIVSEQLAYFLEENRDTATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKL 412

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I
Sbjct: 413 TPAGSRNPAKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 472

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A+G    + +  +D+ Y+K+IIMTDAD DGAHI  LLLTFFY+ M  LIE   +F
Sbjct: 473 NTIIHAIGGGVGADFSIDDINYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVF 532

Query: 574 LISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G   K +  YA  +E    +L++  K       I R+KGLGEM A QL 
Sbjct: 533 IALPPLYKVSKGSGKKEIIEYAWSDEEMGDVLKKVGK----GYTIQRYKGLGEMNADQLW 588

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV+I+         +  +  LMG K + R K+I++  +F
Sbjct: 589 ETTMNPESRTLVRVKIDD----AARVERRVTTLMGDKVEPRRKWIEKNVAF 635


>gi|256389238|ref|YP_003110802.1| DNA gyrase subunit B [Catenulispora acidiphila DSM 44928]
 gi|256355464|gb|ACU68961.1| DNA gyrase, B subunit [Catenulispora acidiphila DSM 44928]
          Length = 661

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 248/664 (37%), Positives = 370/664 (55%), Gaps = 17/664 (2%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
           +    +  S    Y+A SI +LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +
Sbjct: 5   EPTGGSTPSLDGIYNADSISVLEGLEAVRKRPGMYIGSTGERGLHHLVYEIVDNSVDEAM 64

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AGYA+ IEV L  +G + VVDNGRGIPV  + K   KS LE+++T LHAGGKF +  Y++
Sbjct: 65  AGYADTIEVWLLADGGVKVVDNGRGIPVGINTK-TGKSALEVVMTILHAGGKFGDGGYKV 123

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS  + V V     +++Q +  G+P + ++K     +  GT   F 
Sbjct: 124 SGGLHGVGVSVVNALSSRVEVEVHTDGFVWNQVYKHGVPETEVQKGGPAAD-TGTSTIFW 182

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGL 269
            D  IF     +    L +  Q  A+L+  +    + ++ E  ++ G     +++  GG+
Sbjct: 183 ADVDIFETTV-YSFETLSRRFQEMAFLNKGLTISLTDERPEFRDENGEQRSVKYHAEGGI 241

Query: 270 KTYLQTKLENR-SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
             +++     +   +   +   + E K       E A+ W  +    I ++ N I T  G
Sbjct: 242 ADFVRHINSRKGEPVHPNVIDFEGEDKD-RTLAAEIALQWNSQYSESIYTFANNINTHGG 300

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTHE G R ALT  I KYA   +   ++  ++  +D+      I+SV + EP+F GQTK 
Sbjct: 301 GTHEEGFRAALTTLINKYARDQKLLKEKDDNLAGEDIREGLTTIVSVKLAEPQFEGQTKD 360

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-I 444
           KL + +A+  V+  + +    +L +NP EA +++   I+ S  R+  RK RE+ R+   +
Sbjct: 361 KLGNPEAKTFVQRLVYEKLGEWLEENPNEAREVIRKTIQASTARMAARKARELTRRKGLL 420

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKL+DC  N    TE+FIVEGDSAGGSA+  R+   QA+LP+RGKILNV  A  
Sbjct: 421 ESSSLPGKLSDCQSNDPTKTEIFIVEGDSAGGSARSGRDPMTQAILPIRGKILNVEKARI 480

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           +K+  N ++  L+ ALG      +    LRY K+I+M DADVDGAHI +LLLT  ++ M 
Sbjct: 481 DKVLQNTEVQALISALGTGVHDDFDISRLRYHKIILMADADVDGAHINTLLLTLLFRFMK 540

Query: 565 DLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKI--EISRFKGLG 621
            L+E  H++L +PPL+++        YA+ +  + ++LE     GK +    + RFKGLG
Sbjct: 541 PLVEAGHVYLAAPPLYKVKWTNNDFNYAYSDRERDQLLEAGVGAGKRRKDETVQRFKGLG 600

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           EM A +L+ T MD   R L +V ++          D  + LMG   + R  FIQ  A  +
Sbjct: 601 EMNAEELRITTMDREHRILRQVTLDD----AAQADDLFSVLMGEDVEARRNFIQRNAKDV 656

Query: 682 DDVG 685
             + 
Sbjct: 657 RFLD 660


>gi|5817861|gb|AAD52967.1|AF167102_1 DNA gyrase beta subunit [Acholeplasma laidlawii]
          Length = 615

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 248/631 (39%), Positives = 376/631 (59%), Gaps = 20/631 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
             + + +Y A +I+ILEGLE V+ RPGMYIG T E+ LHHL  E++DN++DE + GYA+ 
Sbjct: 2   PNNNNSHYTADNIQILEGLEAVKKRPGMYIGSTGERGLHHLVWEIVDNSIDEALCGYADE 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I + +     + V DNGRGIPV+ HPK   +  +E ILTTLHAGGKFD  +Y++SGGLHG
Sbjct: 62  ITIEILKGEVIRVTDNGRGIPVDIHPK-TKRPAVETILTTLHAGGKFDKGSYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVN LS+   V + +  TI+ QK+ RGIP   L+ K    +K GT I+F+ DP IF
Sbjct: 121 VGASVVNGLSEWFVVEIHKDGTIYEQKYERGIPAYDLKVKGST-DKSGTIISFQADPLIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   ++   L    Q  A+L+  +K     D+     +   + E F++ GG+  Y++  
Sbjct: 180 TETVIYNYETLRTRIQQLAFLNKGLKLNLIDDR-----FEENKSESFHYEGGITEYVKFL 234

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLR 335
            +++S I ++I     E+ G    TVE A+ + +        + N I T EGG HE G +
Sbjct: 235 NQSKSKIHNDIIYIDKEQDGI---TVELAMQFVDSYSPNLHSFTNNISTTEGGMHEDGFK 291

Query: 336 VALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           +AL+  I KYA+  + K+  SI  +D       I+SV   EP+F GQTKTKL + + +  
Sbjct: 292 MALSAVISKYADDLKMKKDDSISGEDTREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAI 351

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454
                 +  + +L++NP +A  ++E V+  +  R+  RK ++   RK+ +  L    KLA
Sbjct: 352 TSQITSEAIERFLMENPAQAKAIVEKVLLATRARVAARKAKDLTRRKSPLDALGFASKLA 411

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC       +E++IVEGDSAGGSAKQ R+   QA++PLRGK+LNV  A  +K+ +N++I+
Sbjct: 412 DCRSKDPEKSEIYIVEGDSAGGSAKQGRDSEFQAIMPLRGKVLNVEKARLDKMLSNKEIV 471

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           +L+QA+G     ++     RY K++IMTDADVDGAHI +LLLTF ++ M  LI+  +++ 
Sbjct: 472 NLIQAMGTGISDEFDITKARYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYA 531

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL++I+ G    Y ++E+   ++L+  +     K  I R+KGLGEM A QL +T MD
Sbjct: 532 AQPPLYKISWGRNFQYRYNEQELNELLKTIE----TKPSIQRYKGLGEMDAEQLWDTTMD 587

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGT 665
             KRTLL++++   +    +     + LMG 
Sbjct: 588 PAKRTLLQIKLEDAI----EADQVFSMLMGE 614


>gi|323137127|ref|ZP_08072206.1| DNA topoisomerase IV, B subunit [Methylocystis sp. ATCC 49242]
 gi|322397485|gb|EFY00008.1| DNA topoisomerase IV, B subunit [Methylocystis sp. ATCC 49242]
          Length = 671

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 369/671 (54%), Positives = 493/671 (73%), Gaps = 9/671 (1%)

Query: 19  SSEKLKKSGEIPDSPAFANQSASD--NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHH 76
           +++     G    +PA    + S    Y A+SI +LEGLEPVR RPGMYIGGTDE A+HH
Sbjct: 2   ATKPDLFGGAPRKAPASKPAAKSGPVEYSAASIEVLEGLEPVRRRPGMYIGGTDETAMHH 61

Query: 77  LFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTT 136
           LF+EV+DNAMDE +AG+A  IEV+L+  G+LTV DNGRGIPV  HPK  +KS LE+++T 
Sbjct: 62  LFAEVLDNAMDEAVAGHATFIEVTLEPGGWLTVTDNGRGIPVGPHPKMKDKSALEVVMTV 121

Query: 137 LHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK 196
           LHAGGKFD+  Y+ SGGLHGVG+SVVNALS+++ V VA +  ++  +FSRG+PL  LE+ 
Sbjct: 122 LHAGGKFDSGAYQTSGGLHGVGVSVVNALSEKVEVEVAIEQQLYRMEFSRGLPLGKLERL 181

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE-KY 255
            KV N+RGT++ F+PD +IFG+ A +  ARL +M++SKAYL G V+  W CD  + E   
Sbjct: 182 GKVHNRRGTKVRFKPDAQIFGESAHWKPARLFRMSRSKAYLFGGVEIRWRCDPSLIEPGS 241

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPE 314
             P      FPGGLK YL  ++  + +++ + FTGK  ++G H G++EWA++W  E++  
Sbjct: 242 DTPADAVLRFPGGLKDYLAREVHGKEVVTDQPFTGKVTREGGH-GSLEWAVSWLPEDDGF 300

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVF 373
           + SYCNT+ T +GGTHE+G R+AL + +K +A+     KRA  +  DDLM  +  ++SVF
Sbjct: 301 VHSYCNTVPTPDGGTHEAGFRLALLKALKDHADRVGQTKRAKDVTGDDLMGQSAAMISVF 360

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           IREPEF GQ K++L+S++A R VE+ +RD FDH+L   P +A KLL++ +ER+EERLRRR
Sbjct: 361 IREPEFQGQNKSRLMSVEASRIVESTVRDAFDHWLAAAPTQANKLLDFAVERAEERLRRR 420

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            ++++ RKTA RKLRLPGKL DC+ N A G+ELFIVEGDSAGGSAK+ARNR+ QAVLPLR
Sbjct: 421 AEKDIARKTATRKLRLPGKLVDCTNNSAQGSELFIVEGDSAGGSAKEARNRATQAVLPLR 480

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIAS 553
           GKILNVASA  +K+  NQQ+ DL QALGC   + YREE+LRY+KVI+MTDADVDGAHIAS
Sbjct: 481 GKILNVASATKDKLLANQQLADLTQALGCGLGAHYREEELRYDKVIVMTDADVDGAHIAS 540

Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613
           LL+TFFY++M  LIE+ HL+L  PPL+++TQG K+VYA D +H+ +++      GKGKIE
Sbjct: 541 LLITFFYRQMPKLIEKGHLYLAQPPLYKLTQGPKTVYARDNDHRDELIRTVL-TGKGKIE 599

Query: 614 ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKF 673
            SRFKGLGEM A+QLKET MD  KRTLL+V I       ++T D + +LMG K + RF F
Sbjct: 600 TSRFKGLGEMSAAQLKETTMDPTKRTLLKVVIEG--EDREETADCVERLMGNKPEARFAF 657

Query: 674 IQERASFIDDV 684
           IQE+A+F  ++
Sbjct: 658 IQEKAAFAVEL 668


>gi|157151219|ref|YP_001450712.1| DNA gyrase subunit B [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|157076013|gb|ABV10696.1| DNA gyrase, B subunit [Streptococcus gordonii str. Challis substr.
           CH1]
          Length = 649

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 255/658 (38%), Positives = 382/658 (58%), Gaps = 24/658 (3%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +        S  YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +A
Sbjct: 2   TEEKQQDIQSQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+A+ I+V ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++S
Sbjct: 62  GFASHIQVFIEKDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVS 120

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG SVVNALS +L V V +   I  Q+++RG  ++ L+   +  ++ GT + F P
Sbjct: 121 GGLHGVGSSVVNALSTQLDVKVYKNGQIHFQEYTRGQVVADLKVIGET-DRTGTTVHFTP 179

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           DP+IF +   FD  +L K  Q  A+L+  +    +  ++  E     + +++++ GG+ +
Sbjct: 180 DPEIFTETVEFDFEKLNKRIQELAFLNRGLSISITDKRDGME-----QSKDYHYEGGIAS 234

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           Y+Q   EN+ +I         E +     TVE A+ +       + S+ N I T EGGTH
Sbjct: 235 YVQYINENKEVIFDNPIYTDGEMEDI---TVEVAMQYTTGYHETVMSFANNIHTHEGGTH 291

Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           E G R ALTR I  YA+  +  +    ++  +D+      ++SV    P+F GQTKTKL 
Sbjct: 292 EQGFRTALTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLG 351

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447
           + +  +       + F  +L++NP  A K++E  I  S+ R+  ++ RE   +K+ +   
Sbjct: 352 NSEVVKITNRLFSEAFSDFLLENPAVAKKIVEKGILASKARIAAKRAREVTRKKSGLEIS 411

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADCS N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI
Sbjct: 412 NLPGKLADCSSNNPVETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKI 471

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N++I  L  A+G    + +     RY+K++IMTDADVDGAHI +LLLT  Y+ M  ++
Sbjct: 472 LANEEIRSLFTAMGTGFGADFDISKCRYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVL 531

Query: 568 EQKHLFLISPPLFRITQGTKSV-YAHD--EEH--KQKILEEFKKHGKGKIEISRFKGLGE 622
           E  ++++  PP++ +  G++   Y     ++    Q+ L  +   G+ K  I R+KGLGE
Sbjct: 532 EAGYVYIAQPPIYGVKVGSEVKEYIQPGADQEIKLQEALARYS-EGRSKPTIQRYKGLGE 590

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           M   QL ET MD   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 591 MDDHQLWETTMDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 644


>gi|12044853|ref|NP_072663.1| DNA gyrase subunit B [Mycoplasma genitalium G37]
 gi|255660024|ref|ZP_05405433.1| DNA gyrase subunit B [Mycoplasma genitalium G37]
 gi|1346242|sp|P47249|GYRB_MYCGE RecName: Full=DNA gyrase subunit B
 gi|497647|gb|AAA57071.1| DNA gyrase subunit B [Mycoplasma genitalium]
 gi|1045671|gb|AAC71219.1| DNA gyrase, B subunit [Mycoplasma genitalium G37]
 gi|166078727|gb|ABY79345.1| DNA gyrase, B subunit [synthetic Mycoplasma genitalium JCVI-1.0]
          Length = 650

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 250/664 (37%), Positives = 382/664 (57%), Gaps = 28/664 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
               + ++ YD+SSI++LEGLE VR RPGMYIG T E+ LHH+  E++DN++DE + G+A
Sbjct: 1   MEENNKANIYDSSSIKVLEGLEAVRKRPGMYIGSTGEEGLHHMIWEIVDNSIDEAMGGFA 60

Query: 95  NLIEVSLDGNGFLT-VVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           + ++++L  + F+T V D+GRGIPV+ HPK  N+ST+E + T LHAGGKFDN +Y++SGG
Sbjct: 61  SFVKLTL-EDNFVTRVEDDGRGIPVDIHPK-TNRSTVETVFTVLHAGGKFDNDSYKVSGG 118

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPD 212
           LHGVG SVVNALS    V V RQN  +   FS G   +  L ++     + GT + F PD
Sbjct: 119 LHGVGASVVNALSSSFKVWVFRQNKKYFLSFSDGGKVIGDLVQEGNSEKEHGTIVEFVPD 178

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
             +      +    ++   Q  A+L+  ++  +  +++       P+   + + GGL  Y
Sbjct: 179 FSVMEKS-DYKQTVIVSRLQQLAFLNKGIRIDFVDNRKQ-----NPQSFSWKYDGGLVEY 232

Query: 273 LQTKLENRSLISSEIFTGK-------TEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
           +      +  + +E+   +         +   +   VE A  + +     I S+CN I T
Sbjct: 233 IHHLNNEKEPLFNEVIADEKTETVKAVNRDENYTVKVEVAFQYNKTYNQSIFSFCNNINT 292

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQ 382
            EGGTH  G R AL + I ++A   +  +     I  DD+      I+S+    P++ GQ
Sbjct: 293 TEGGTHVEGFRNALVKIINRFAVENKFLKDSDEKINRDDVCEGLTAIISIKHPNPQYEGQ 352

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TK KL + + +  V + + + F+ ++++NP EA  ++   +   E R R ++ RE   RK
Sbjct: 353 TKKKLGNTEVRPLVNSVVSEIFERFMLENPQEANAIIRKTLLAQEARRRSQEARELTRRK 412

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           +      LPGKLADC+      +EL+IVEGDSAGG+AK  R+R  QA+LPLRGKILNV  
Sbjct: 413 SPFDSGSLPGKLADCTTRDPSISELYIVEGDSAGGTAKTGRDRYFQAILPLRGKILNVEK 472

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
           +  E+I NN +I  LV A+GC  +  +  E LRY K++IMTDADVDGAHI +LLLTFF++
Sbjct: 473 SNFEQIFNNAEISALVMAIGCGIKPDFELEKLRYSKIVIMTDADVDGAHIRTLLLTFFFR 532

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
            MY L+EQ ++F+  PPL++++   K +Y H +   ++   +   +   K  + R+KGLG
Sbjct: 533 FMYPLVEQGNIFIAQPPLYKVSYSHKDLYMHTDVQLEQWKSQ---NPNVKFGLQRYKGLG 589

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           EM A QL ET MD   RTLL+V +            + + LMG +   R +FI++ A  +
Sbjct: 590 EMDALQLWETTMDPKVRTLLKVTVED----ASIADKAFSLLMGDEVPPRREFIEKNARSV 645

Query: 682 DDVG 685
            ++ 
Sbjct: 646 KNID 649


>gi|73916372|gb|AAZ93054.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916374|gb|AAZ93055.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
          Length = 647

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 241/653 (36%), Positives = 367/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V    +  +         E  EF++  G++ ++    E+
Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           + +++      + E  G     VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     + VYA  +   +++ ++F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVVYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|50812242|ref|NP_389691.2| DNA topoisomerase IV subunit B [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221309697|ref|ZP_03591544.1| DNA topoisomerase IV subunit B [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221314019|ref|ZP_03595824.1| DNA topoisomerase IV subunit B [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221318941|ref|ZP_03600235.1| DNA topoisomerase IV subunit B [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221323215|ref|ZP_03604509.1| DNA topoisomerase IV subunit B [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|3914289|sp|Q59192|PARE_BACSU RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|2558946|gb|AAB81614.1| ParE [Bacillus subtilis]
 gi|32468765|emb|CAB13692.2| subunit B of DNA topoisomerase IV [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 655

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 249/651 (38%), Positives = 371/651 (56%), Gaps = 36/651 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DEV+AG+ + I V + 
Sbjct: 8   DYNEDAIQVLEGLEAVRKRPGMYIGSTDARGLHHLVYEIVDNSVDEVLAGHGDHIIVKIH 67

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V D GRG+P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 68  KDNSISVQDRGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 125

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L VT+ R   ++ Q+F  G  P++ LEK  K +   GT   F+PDP +F     
Sbjct: 126 NALSEWLTVTIERDGFVYQQRFENGGKPVTSLEKIGKTKK-TGTLTHFKPDPTMFSTTT- 183

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L +  +  A+L   +K     ++         ++E FY+  G++ ++    E + 
Sbjct: 184 YNFETLSERLRESAFLLKGLKIELIDER-------NDQREVFYYENGIEAFVAYLNEEKD 236

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
           ++ SE+ + + E    H   V++A  + +     I S+ N + T +GGTHESG + A+TR
Sbjct: 237 VL-SEVVSFEGE---HHSIEVDFAFQFNDGYSENILSFVNNVRTKDGGTHESGAKTAMTR 292

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA       ++  ++   D+      I+SV I E   +F GQTK KL + +A+  V
Sbjct: 293 AFNEYARKVALLKEKDKNLEGTDIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAV 352

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKL 453
           +  + +   ++L +N   AT L++  I+ S+ R   RK RE  R    RK     L GKL
Sbjct: 353 DAIVSEQLAYFLEENRDTATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKL 412

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I
Sbjct: 413 TPAGSRNPAKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 472

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A+G    + +  +D+ Y+K+IIMTDAD DGAHI  LLLTFFY+ M  LIE   +F
Sbjct: 473 NTIIHAIGGGVGADFSIDDINYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVF 532

Query: 574 LISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G   K +  YA  +E    +L++  K       I R+KGLGEM A QL 
Sbjct: 533 IALPPLYKVSKGSGKKEIIEYAWSDEEMGDVLKKVGK----GYTIQRYKGLGEMNADQLW 588

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV+I+         +  +  LMG K + R K+I++  +F
Sbjct: 589 ETTMNPESRTLVRVKIDD----AARVERRVTTLMGDKVEPRRKWIEKNVAF 635


>gi|48478486|ref|YP_024192.1| DNA gyrase subunit B [Picrophilus torridus DSM 9790]
 gi|48431134|gb|AAT43999.1| DNA gyrase subunit B [Picrophilus torridus DSM 9790]
          Length = 646

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 257/663 (38%), Positives = 383/663 (57%), Gaps = 38/663 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           D Y+AS I+ILEGL+ VR  PGMYIG T E+ LHH+  EVIDN++DE +AG+ + I + +
Sbjct: 2   DEYNASQIQILEGLKAVRQTPGMYIGNTSEEGLHHMVYEVIDNSIDESMAGFCSNIYIII 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G ++V D+GRGIPV+ HPK+  +  LEI+LT LH+G KFD + Y+++GGLHGVG+ V
Sbjct: 62  YKDGSISVEDDGRGIPVDMHPKY-KRPGLEIVLTELHSGAKFDKNVYKVTGGLHGVGVHV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR-----------GTRITFR 210
           VNALSD L   V + + ++ +KF RG+P++ +E+ + +               GT I F 
Sbjct: 121 VNALSDYLEAIVKKNDKLYIEKFERGLPVTKMEELDYIMASTIKDVKIKLANHGTIIKFH 180

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PDP+IF  +  F    +    +  A+L+ +V      ++         +KE ++F GGL 
Sbjct: 181 PDPQIFDVR-DFSYEIIAGRCRQLAFLNPQVTITVEDER-------TSKKETYHFTGGLS 232

Query: 271 TYLQTKLENRSLISSEIFTGKTE-----KKGTHRGTVEWAIAW-CEENPEITSYCNTILT 324
            +++    N+  +  +     TE          + ++E+A  +  + +  + S+ N I T
Sbjct: 233 EFVKYISSNKDPVYKDPIYYSTEIEKEVHNEIRKYSLEFAFLYVTDSSKIVESFANNIRT 292

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
              GTH +G    L+R I  Y +     + ++I  DD     +  + V +  P+F GQTK
Sbjct: 293 IYDGTHVTGFYTGLSRAIIDYIKSKNLSK-LNITGDDTRDGLIAAIHVKLMRPQFEGQTK 351

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA- 443
            KL + + +  V +A       Y    P+ A  + + VI  +E R   R Q+E+ ++ + 
Sbjct: 352 EKLGNSEIKSIVASATEMYLKSYFESYPVTADAIAKRVILSAEIREASRSQKELIKRKSA 411

Query: 444 -IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
                 LPGKLADCS +    TEL+IVEGDSAGGSAKQARNR  QA+LPLRGKILNV  A
Sbjct: 412 LSSGSSLPGKLADCSSDDPAKTELYIVEGDSAGGSAKQARNREFQAILPLRGKILNVEKA 471

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
           G  K+  N++I +L+ A+G   +  + E+ LRY+K+IIMTDADVDGAHI +LLLTFFY+ 
Sbjct: 472 GDNKVLVNEEIKNLITAIGSGIKENFDEKKLRYDKIIIMTDADVDGAHIRTLLLTFFYRF 531

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
           M  LIE  H++   PPL+RI +GT   Y + ++ K ++L++          I RFKGLGE
Sbjct: 532 MRPLIELGHVYFAEPPLYRIQKGTDINYVYTDDEKDRLLKKLGNA-----TIQRFKGLGE 586

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           M   QL +T M+  KR ++ V I   +       +  N LMG K + R KFI+E A F+ 
Sbjct: 587 MNPEQLWDTTMNPEKRRIVMVTIEDAMY----ADELFNILMGEKVEPRRKFIEENAKFVK 642

Query: 683 DVG 685
           ++ 
Sbjct: 643 NLD 645


>gi|288556234|ref|YP_003428169.1| DNA topoisomerase IV subunit B [Bacillus pseudofirmus OF4]
 gi|288547394|gb|ADC51277.1| DNA topoisomerase IV subunit B [Bacillus pseudofirmus OF4]
          Length = 656

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 237/650 (36%), Positives = 362/650 (55%), Gaps = 33/650 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DE +AG+ + I+V++ 
Sbjct: 8   DYNDDAIQVLEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALAGFGSYIKVTIH 67

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V D GRG+PV  H     K T EIILT LHAGGKF    Y  SGGLHGVG SVV
Sbjct: 68  RDNSISVTDEGRGMPVGMHK--LGKPTPEIILTVLHAGGKFGQGGYATSGGLHGVGASVV 125

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+ L V + R  T++ Q+F  G       +K+    K GT I F+PDP IF     +
Sbjct: 126 NALSEWLVVEIKRDGTVYKQRFENGGKAVTTLEKQGTTRKSGTTIHFKPDPSIFSVTT-Y 184

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L +  +  A+L   +K      +   E       E F++  G++ +++   E++  
Sbjct: 185 NFETLSERLREAAFLLKGLKIELCDMRSDQEN------EIFHYDNGIEAFVEYLNEDKET 238

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +   +      ++      VE A  + +     + S+ N + T +GGTHE G + A+TR 
Sbjct: 239 LHPVVSFSGEHQE----IEVELAFQFNDGYTESVLSFVNNVRTKDGGTHELGAKAAMTRA 294

Query: 342 IKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397
           + +YA   +  +    ++   D+      I+SV + E   +F GQTK+KL + +A+  V+
Sbjct: 295 VNEYARKVKLLKEKEKNLDGSDIREGFTAIVSVRVPEAKLQFEGQTKSKLGTPEARSAVD 354

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGKLA 454
             + +   ++  +NP  +T L++  ++ ++ R   RK RE  R     K +     GKL 
Sbjct: 355 GLVSEKLSYFFEENPDISTMLIKKAVKAAQAREAARKAREDARNGKKSKRKDVLLSGKLT 414

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
                     EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A  E I  N++I 
Sbjct: 415 PAQSKNPKRNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLEDIMKNEEIR 474

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++  +G    + +  ED+ Y+K++IMTDAD DGAHI  LLLTFFY+ M  L+E   +++
Sbjct: 475 TIIHTIGAGVGADFDLEDVNYDKIVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVYI 534

Query: 575 ISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
             PPL+++++G   K V  YA DE      +++  +       + R+KGLGEM A+QL E
Sbjct: 535 ALPPLYKVSRGTGKKEVIEYAWDERELDTAIKKVGR----GYMLQRYKGLGEMNATQLWE 590

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           T MD   RTL+RV+I+         +  +  LMG K + R K+I+   +F
Sbjct: 591 TTMDPETRTLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIETHVAF 636


>gi|148255370|ref|YP_001239955.1| DNA topoisomerase IV subunit B [Bradyrhizobium sp. BTAi1]
 gi|146407543|gb|ABQ36049.1| DNA topoisomerase IV subunit B [Bradyrhizobium sp. BTAi1]
          Length = 687

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 382/651 (58%), Positives = 478/651 (73%), Gaps = 9/651 (1%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           +   Y A  I +LEGLEPVR RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+A  IEV
Sbjct: 40  SEGEYTARDIEVLEGLEPVRRRPGMYIGGTDEKALHHLFAEVIDNSMDEALAGHATFIEV 99

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            LD  GFLTV DNGRGIPV+ HPKFP KS LEII+ TLHAGGKFD+  YE SGGLHGVGI
Sbjct: 100 ELDAQGFLTVTDNGRGIPVDPHPKFPKKSALEIIMCTLHAGGKFDSKVYETSGGLHGVGI 159

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS  L V VAR   ++   F RG P   LE+  KV N+RGT++ F+PDP IFG K
Sbjct: 160 SVVNALSTRLEVEVARNQKLYRMIFERGHPKGKLEEIGKVANRRGTKVRFQPDPTIFGAK 219

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE-EFYFPGGLKTYLQTKLE 278
           A F   RL KM +SKAYL G V+  W CD  + +     + E  F+FPGGLK YL   + 
Sbjct: 220 ATFKPQRLFKMARSKAYLFGGVEIRWKCDPSLLKGIEDVQPEATFHFPGGLKDYLAAAIH 279

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVA 337
             +L+  +IF GK+ + G H G  EWA+AW  + +  ++SYCNTI T +GGTHESG+R A
Sbjct: 280 ADTLVHPDIFAGKSGRTGGH-GGCEWAVAWTADADGFLSSYCNTIPTPDGGTHESGIRSA 338

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L RG+K +AE     KR+ +I S+D+M  A  +LSVF+REPEF GQTK +L + +AQR V
Sbjct: 339 LLRGLKDHAERVGQGKRSANITSEDIMAGAAIMLSVFVREPEFQGQTKDRLATAEAQRIV 398

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           E A++DPFDH+L  NP++A +LL++VIER+EER+RRR+++E  RKTA +KLRLPGKLADC
Sbjct: 399 EQAVKDPFDHWLSGNPVQANRLLDFVIERAEERIRRRQEKETARKTATKKLRLPGKLADC 458

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +     G+ELFIVEGDSAGGSAKQAR+R  QAVLPLRGKILNVASAG +K+  N Q+ DL
Sbjct: 459 TDAGTEGSELFIVEGDSAGGSAKQARDRKKQAVLPLRGKILNVASAGKDKLTANAQLADL 518

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           V A+G  T + YREEDLRY+++IIMTDADVDGAHIASLL+TFFY++M  LI++ HL+L  
Sbjct: 519 VMAIGAGTGTSYREEDLRYQRIIIMTDADVDGAHIASLLITFFYRQMPRLIDEGHLYLAV 578

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+R+T  +K+ YA DE H+ +IL+  + +   K++I RFKGLGEM+ +QLKET MD  
Sbjct: 579 PPLYRLTHNSKTFYARDEAHRDEILKR-EFNANAKVDIGRFKGLGEMMPAQLKETTMDPA 637

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD--VG 685
           KRTLLRV +  D      T DS+ +LMGTKA+ RF FI E+A F  D  + 
Sbjct: 638 KRTLLRVVLLADDRDG--TADSVERLMGTKAEARFAFISEKAEFASDELLD 686


>gi|327440233|dbj|BAK16598.1| type IIA topoisomerase, B subunit [Solibacillus silvestris StLB046]
          Length = 657

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 240/649 (36%), Positives = 349/649 (53%), Gaps = 32/649 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DE +AGY N I V + 
Sbjct: 9   SYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALAGYGNHIIVKIH 68

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V D+GRG+P   H     K T EII T LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 69  EDNSISVRDHGRGMPTGMHKM--GKPTPEIIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 126

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L VT+ R N I+ Q+F +G   +          + GT + F PDP IF     +
Sbjct: 127 NALSSFLEVTIYRDNQIYRQRFEQGGKPATSLDMIGKTKETGTLVHFLPDPSIFSVI-KY 185

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L +  +  A+L   +K      +         + E FY+  G++ ++    E + +
Sbjct: 186 NYDTLAERLRESAFLLKGLKIELIDARG------EGQHEIFYYENGIEAFVTYLNEEKDV 239

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +    +   T         VE+A+ + +     I S+ N + T +GGTHE+G + ALTR 
Sbjct: 240 LHPVKYVEGT----IQEIEVEFALQFNDGYSETILSFVNNVRTRDGGTHETGAKTALTRV 295

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397
             +YA       ++  ++   D+      I+SV I E   +F GQTK KL + +A+  V+
Sbjct: 296 FNEYARKIGLLKEKDKNLEGTDIREGLTAIVSVRIPENLLQFEGQTKGKLGTSEARSAVD 355

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL--PGKLAD 455
             + +   + L +N   +  L+   I   + R   RK R+  R    RK      GKL  
Sbjct: 356 TVVSEQLMYVLEENAELSASLVRKAIRAQQVREAARKARDDARNGKKRKSSTLLSGKLTP 415

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
                A   EL++VEGDSAGGSAKQ R+R+ QA+LPLRGK++N   A  + I  N++I  
Sbjct: 416 AQSKNASRNELYLVEGDSAGGSAKQGRDRTFQAILPLRGKVINTEKAKLQDIMKNEEIAT 475

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++  +G    + +  ED  Y+KV+IMTDAD DGAHI  LLLTFFY+ M  LIE   +++ 
Sbjct: 476 IIHTIGAGVGADFSVEDAAYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVYIA 535

Query: 576 SPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
            PPL+++++G   K    YA  E+      ++  K       I R+KGLGEM A QL +T
Sbjct: 536 LPPLYKVSKGSGKKQELMYAWTEQELSAATKKIGK----GYIIQRYKGLGEMNADQLWDT 591

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            M+   RTL+RV+I          +  I  LMG K + R K+I+   +F
Sbjct: 592 TMNPETRTLIRVKIEDG----ARAERRITTLMGDKVEPRRKWIESNVNF 636


>gi|194246593|ref|YP_002004232.1| DNA gyrase, beta subunit [Candidatus Phytoplasma mali]
 gi|193806950|emb|CAP18382.1| DNA gyrase, beta subunit [Candidatus Phytoplasma mali]
          Length = 633

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 270/649 (41%), Positives = 389/649 (59%), Gaps = 21/649 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
             +  Y+A SI++LEGLE VR+RPGMYIG T+EK L+HL  E++DNA+DE + GYAN I 
Sbjct: 3   KKTKIYNAESIQVLEGLEAVRIRPGMYIGSTNEKGLNHLVWEIVDNAIDESLEGYANEII 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           + +     + V DNGRGIPV+ HPK  NK+ +E ILTTLHAGGKFDNS+Y+ISGGLHGVG
Sbjct: 63  LEVLPENIIRVTDNGRGIPVDIHPK-TNKTVVETILTTLHAGGKFDNSSYKISGGLHGVG 121

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS    V +  Q  I+ QK+ +G P++ LE K      +GT ITF PD +IF +
Sbjct: 122 ASVVNALSSWFLVEIHLQGKIYFQKYEKGKPVTKLEIKGNTNK-KGTVITFLPDNEIFKE 180

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              ++   L    Q  A+L+  +K      ++  E+        FY+  GLK Y++   +
Sbjct: 181 TTNYNFEILKIRMQQLAFLNKGIKLIIIDKRKDIEEKFE-----FYYKEGLKEYIKYLNQ 235

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
           N++ ++ E +  K  +K       ++   +      I S+ N I T +GGTHE G ++AL
Sbjct: 236 NKTSLNKEFYQEKFFEKMFFEIVFQYTEVYNNN---IYSFVNNIPTHDGGTHEEGFKMAL 292

Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
            R + KY +     K+ I+ IS+D +     ++S+    P F  QTKTK ++ + ++ + 
Sbjct: 293 NRILNKYVKDKNMLKKNINFISEDTLEGLTVVISLKHPNPSFESQTKTKFLNSEVRQIIS 352

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADC 456
               +  + YL++NP EA K++E  +  S+ R+  +K RE  R+ + +  L    KLADC
Sbjct: 353 KFFGEELEKYLLENPQEAKKIIEKCLLSSKARIDAKKAREATRRKSPLETLGFASKLADC 412

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
                  +EL+IVEGDSAGGSAKQ R+   QA+LPL+GK+LNV  A  EKI +N++I+ L
Sbjct: 413 YNKNPQESELYIVEGDSAGGSAKQGRDSKYQAILPLKGKVLNVEKARLEKILSNKEIISL 472

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           +QA+G      +  + +RY ++IIMTDADVDGAHI +LLLTFF++ +  LIE+ +++   
Sbjct: 473 IQAVGTGFGKDFNIDKVRYHRIIIMTDADVDGAHIRTLLLTFFFRNLKPLIEKGYIYFAK 532

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
            PL++I  G K  YA++E+  +KIL        GK  I R+KGLGEM   QL ET M+  
Sbjct: 533 SPLYKIQYGKKITYAYEEQELKKILSRIS----GKFYIQRYKGLGEMNPEQLWETTMNPE 588

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            RTLL+V    DL S        N LMG +   R KFIQ+ A + D + 
Sbjct: 589 TRTLLQVNSENDLES----DQVFNMLMGEEVSVRKKFIQDNAIYAD-LD 632


>gi|212550383|ref|YP_002308700.1| DNA gyrase subunit B [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
 gi|212548621|dbj|BAG83289.1| DNA gyrase subunit B [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
          Length = 644

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 255/653 (39%), Positives = 379/653 (58%), Gaps = 22/653 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y A +I++LEG+E VR RP MYIG   +K LHHL  EV+DN++DE +AGY   I+V ++
Sbjct: 3   EYKADNIQVLEGIEAVRKRPAMYIGDIGQKGLHHLVYEVVDNSIDETLAGYCKNIQVFIN 62

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV D+GRGIPV+ H K   +S LE++LT LHAGGKFD ++Y++SGGLHGVG+S V
Sbjct: 63  DDNSVTVKDDGRGIPVDFHEK-EKRSALEVVLTVLHAGGKFDKNSYKVSGGLHGVGVSCV 121

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L   V R   I++Q+FS G   + L    +  + RGT ITF+PD  IF     +
Sbjct: 122 NALSAYLRAEVRRDGKIYAQEFSCGKVTNELTIIGETND-RGTTITFKPDSSIFIVT-EY 179

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR-S 281
               L    +  ++L+  V+   +  +         + E FY   GL  +++     +  
Sbjct: 180 KYDILASRLRELSFLNAGVRLELTDKRVSFVNG-TFKHEIFYSSEGLSEFVRFIDSAKQP 238

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
           LI ++I    TEK+G     VE A+ +       I+SY N I T E GTH +G R ALTR
Sbjct: 239 LIGNDIIHIITEKQGIP---VEIAMTYNTSYNESISSYVNNINTIEHGTHVAGFRRALTR 295

Query: 341 GIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +KKYA  ++   K  I I  DD       ++S+ ++EP+F GQTKTKL + +A   V+ 
Sbjct: 296 TLKKYAVDSKLLEKIKIEISPDDFREGLTAVISIKVQEPQFEGQTKTKLGNNEAIGAVDQ 355

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCS 457
           A+      YL ++P EA  +++ V+  +  R   R  RE+ ++ + +    LPGKLADCS
Sbjct: 356 AVGTALSVYLEEHPKEAKTIVDKVVLAAMARHAARNAREMVQRKSPLAGGGLPGKLADCS 415

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                  E+F+VEGDSAGG+AKQ R R  QA+LPLRGKILNV  A   K+  N +I ++ 
Sbjct: 416 DRNPEKCEIFLVEGDSAGGTAKQGRERKYQAILPLRGKILNVEKAMPYKVLENSEIRNIF 475

Query: 518 QALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
            ALG    +         + LRY KV+IMTDADVDG+HIA+L+LTFF++ M  +IE+ ++
Sbjct: 476 TALGVTIGTTEDSKGLNIDKLRYHKVVIMTDADVDGSHIATLILTFFFRHMRLMIEKGYV 535

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++ +PPL+ + +G    Y   ++ +Q  ++++ +  + ++   R+KGLGEM A QL +T 
Sbjct: 536 YIATPPLYLLKKGKVEEYCWTDQQRQAFIDKYARGDEKQVHTQRYKGLGEMNAQQLWDTT 595

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           M+   RTL RV I     +  +       LMG     R +FI++ A +  ++ 
Sbjct: 596 MNPEVRTLKRVTIE----NAAEADRVFAILMGEDVTPRREFIEDNAIYA-NID 643


>gi|206968830|ref|ZP_03229785.1| DNA topoisomerase IV, B subunit [Bacillus cereus AH1134]
 gi|228922304|ref|ZP_04085611.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228953865|ref|ZP_04115904.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229071096|ref|ZP_04204322.1| DNA topoisomerase 4 subunit B [Bacillus cereus F65185]
 gi|229080802|ref|ZP_04213320.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock4-2]
 gi|229191682|ref|ZP_04318661.1| DNA topoisomerase 4 subunit B [Bacillus cereus ATCC 10876]
 gi|206735871|gb|EDZ53029.1| DNA topoisomerase IV, B subunit [Bacillus cereus AH1134]
 gi|228591844|gb|EEK49684.1| DNA topoisomerase 4 subunit B [Bacillus cereus ATCC 10876]
 gi|228702536|gb|EEL55004.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock4-2]
 gi|228712036|gb|EEL63985.1| DNA topoisomerase 4 subunit B [Bacillus cereus F65185]
 gi|228805833|gb|EEM52413.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228837359|gb|EEM82693.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 654

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 241/651 (37%), Positives = 361/651 (55%), Gaps = 36/651 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AG+ + I V + 
Sbjct: 7   QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V+D GRG+P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 67  KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L VT+ R   I+ Q+F  G +P++ LEK  K +   GT + F+PD  IF     
Sbjct: 125 NALSEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 182

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L +  +  A+L   +K     ++   E       + F++  G++ ++    E + 
Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DVFHYETGIEAFVSYLNEEKD 235

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I   +     E+ G      E A  + +     I S+ N + T +GGTHE+G + A+TR
Sbjct: 236 SIHPVV-YFTGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA       ++  ++   D+      I+SV + E   +F GQTK KL + +A+ ++
Sbjct: 292 VFNEYARKVALLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSI 351

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453
           +  + +   ++L +NP  AT L+   I+ ++ R   RK RE  R    +K     L GKL
Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARSGKKKKKSEGTLSGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I
Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A+G    +++  ED+ Y+KV+IMTDAD DGAHI  LLLTFFY+ M  LIE   +F
Sbjct: 472 NTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G        YA  +E    + ++  K       + R+KGLGEM A QL 
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGK----GYMLQRYKGLGEMNADQLW 587

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV+I+         +  +  LMG K + R K+I+    F
Sbjct: 588 ETTMNPETRTLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIERNVQF 634


>gi|229151792|ref|ZP_04279991.1| DNA topoisomerase 4 subunit B [Bacillus cereus m1550]
 gi|228631605|gb|EEK88235.1| DNA topoisomerase 4 subunit B [Bacillus cereus m1550]
          Length = 654

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 241/651 (37%), Positives = 361/651 (55%), Gaps = 36/651 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AG+ + I V + 
Sbjct: 7   QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V+D GRG+P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 67  KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L VT+ R   I+ Q+F  G +P++ LEK  K +   GT + F+PD  IF     
Sbjct: 125 NALSEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 182

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L +  +  A+L   +K     ++   E       + F++  G++ ++    E + 
Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DIFHYETGIEAFVSYLNEEKD 235

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I   +     E+ G      E A  + +     I S+ N + T +GGTHE+G + A+TR
Sbjct: 236 SIHPVV-YFTGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA       ++  ++   D+      I+SV + E   +F GQTK KL + +A+ ++
Sbjct: 292 VFNEYARKVALLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSI 351

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453
           +  + +   ++L +NP  AT L+   I+ ++ R   RK RE  R    +K     L GKL
Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARSGKKKKKSEGTLSGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I
Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A+G    +++  ED+ Y+KV+IMTDAD DGAHI  LLLTFFY+ M  LIE   +F
Sbjct: 472 NTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G        YA  +E    + ++  K       + R+KGLGEM A QL 
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGK----GYMLQRYKGLGEMNADQLW 587

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV+I+         +  +  LMG K + R K+I+    F
Sbjct: 588 ETTMNPETRTLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIERNVQF 634


>gi|322388043|ref|ZP_08061649.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus infantis
           ATCC 700779]
 gi|321141064|gb|EFX36563.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus infantis
           ATCC 700779]
          Length = 649

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 240/653 (36%), Positives = 366/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F   G P++ LEK     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGAVYRQRFENGGKPVTTLEKIGTAPKSKTGTKVTFMPDASIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V    +  +         E  EF++  G++ ++    E+
Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYVNGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++      + E  G     VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KETLTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V++ + +    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 IVDSIVAEKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 475 EINTMIYTIGAGVGADFSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +++ ++F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|262283011|ref|ZP_06060778.1| DNA gyrase subunit B [Streptococcus sp. 2_1_36FAA]
 gi|262261263|gb|EEY79962.1| DNA gyrase subunit B [Streptococcus sp. 2_1_36FAA]
          Length = 649

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 255/658 (38%), Positives = 381/658 (57%), Gaps = 24/658 (3%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +        S  YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +A
Sbjct: 2   TEEKQQDIQSQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+A+ I+V ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++S
Sbjct: 62  GFASHIQVFIEKDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVS 120

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG SVVNALS +L V V +   I  Q+++RG  ++ L+      ++ GT + F P
Sbjct: 121 GGLHGVGSSVVNALSTQLDVKVYKNGQIHFQEYTRGQVVADLKVIGDT-DRTGTTVHFTP 179

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           DP+IF +   FD  +L K  Q  A+L+  +    +  ++  E     + +++++ GG+ +
Sbjct: 180 DPEIFTETVEFDFEKLNKRIQELAFLNRGLSISITDKRDGME-----QSKDYHYEGGIAS 234

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           Y+Q   EN+ +I         E +     TVE A+ +       + S+ N I T EGGTH
Sbjct: 235 YVQYINENKEVIFDNPIYTDGEMEDI---TVEVAMQYTTGYHETVMSFANNIHTHEGGTH 291

Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           E G R ALTR I  YA+  +  +    ++  +D+      ++SV    P+F GQTKTKL 
Sbjct: 292 EQGFRTALTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLG 351

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447
           + +  +       + F  +L++NP  A K++E  I  S+ R+  ++ RE   +K+ +   
Sbjct: 352 NSEVVKITNRLFSEAFSDFLLENPAVAKKIVEKGILASKARIAAKRAREVTRKKSGLEIS 411

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADCS N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI
Sbjct: 412 NLPGKLADCSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKI 471

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N++I  L  A+G    + +     RY+K++IMTDADVDGAHI +LLLT  Y+ M  ++
Sbjct: 472 LANEEIRSLFTAMGTGFGADFDISKCRYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVL 531

Query: 568 EQKHLFLISPPLFRITQGTKSV-YAHD--EEH--KQKILEEFKKHGKGKIEISRFKGLGE 622
           E  ++++  PP++ +  G++   Y     ++    Q+ L  +   G+ K  I R+KGLGE
Sbjct: 532 EAGYVYIAQPPIYGVKVGSEVKEYIQPGADQEIKLQEALARYS-EGRSKPSIQRYKGLGE 590

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           M   QL ET MD   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 591 MDDHQLWETTMDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 644


>gi|229179883|ref|ZP_04307229.1| DNA topoisomerase 4 subunit B [Bacillus cereus 172560W]
 gi|228603564|gb|EEK61039.1| DNA topoisomerase 4 subunit B [Bacillus cereus 172560W]
          Length = 654

 Score =  599 bits (1543), Expect = e-169,   Method: Composition-based stats.
 Identities = 241/651 (37%), Positives = 361/651 (55%), Gaps = 36/651 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AG+ + I V + 
Sbjct: 7   QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V+D GRG+P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 67  KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L VT+ R   I+ Q+F  G +P++ LEK  K +   GT + F+PD  IF     
Sbjct: 125 NALSEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 182

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L +  +  A+L   +K     ++   E       + F++  G++ ++    E + 
Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DVFHYETGIEAFVSYLNEEKD 235

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I   +     E+ G      E A  + +     I S+ N + T +GGTHE+G + A+TR
Sbjct: 236 SIHPVV-YFTGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA       ++  ++   D+      I+SV + E   +F GQTK KL + +A+ ++
Sbjct: 292 VFNEYARKVALLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSI 351

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453
           +  + +   ++L +NP  AT L+   I+ ++ R   RK RE  R    +K     L GKL
Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARSGKKKKKSEGTLSGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I
Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A+G    +++  ED+ Y+KV+IMTDAD DGAHI  LLLTFFY+ M  LIE   +F
Sbjct: 472 NTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 574 LISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G        YA  +E    + ++  K       + R+KGLGEM A QL 
Sbjct: 532 IALPPLYKVSKGKGKSEIIEYAWSDEELDGVTKKVGK----GYMLQRYKGLGEMNADQLW 587

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV+I+         +  +  LMG K + R K+I+    F
Sbjct: 588 ETTMNPETRTLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIERNVQF 634


>gi|319653142|ref|ZP_08007244.1| DNA topoisomerase IV subunit B [Bacillus sp. 2_A_57_CT2]
 gi|317395063|gb|EFV75799.1| DNA topoisomerase IV subunit B [Bacillus sp. 2_A_57_CT2]
          Length = 660

 Score =  599 bits (1543), Expect = e-169,   Method: Composition-based stats.
 Identities = 247/651 (37%), Positives = 369/651 (56%), Gaps = 36/651 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DE +AGY + I V + 
Sbjct: 9   DYNDDAIQVLEGLEAVRKRPGMYIGSTDARGLHHLVYEIVDNAVDEALAGYGDHIIVKIH 68

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V D GRG+P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 69  KDNSISVQDKGRGMPTGMH--RMGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 126

Query: 163 NALSDELHVTVARQNTIFSQKFS-RGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L V + R   ++ Q+F   G P++ LEK  K  N+ GT I F+PDP IF     
Sbjct: 127 NALSEWLVVKIKRDGFVYEQRFELGGKPVTTLEKVGKT-NQSGTTIHFKPDPSIFSTTT- 184

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L +  +  A+L   +K     ++           + F++  G++ +++   E + 
Sbjct: 185 YNYETLCERLRESAFLLKGMKIEIIDER-------NDFHDVFHYENGIEAFVEYLNEEKD 237

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340
           ++   + + + E  G     V++A  + +   E   S+ N + T +GGTHE+G + A+TR
Sbjct: 238 ILHPVV-SFEGESNGI---EVDFAFQFNDGYSENVLSFVNNVRTKDGGTHEAGSKTAMTR 293

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA       ++  ++   DL      I+SV + E   +F GQTK KL + +A+  V
Sbjct: 294 AFNEYARKVNLLKEKDKNLDGADLREGFTAIVSVRVPEELLQFEGQTKGKLGTSEARSAV 353

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKL 453
           ++ + +   ++L +NP  ++ L++  I+  + R   RK RE  R    RK     L GKL
Sbjct: 354 DSVVSEHLSYFLEENPETSSLLIKKAIKAFQAREAARKAREEARSGKKRKKSEAMLSGKL 413

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A  + I  N++I
Sbjct: 414 TPAQSRNPQRNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLQDIFKNEEI 473

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A+G    S +  ED+ Y+KVIIMTDAD DGAHI  LLLTFFY+ M  L+E   +F
Sbjct: 474 NTIIHAVGAGVGSDFNLEDVNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLLEAGKVF 533

Query: 574 LISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G   K V  YA  ++  Q  +++  K       + R+KGLGEM A QL 
Sbjct: 534 IALPPLYKVSKGSGKKEVIEYAWSDDDLQDTIKKVGK----GYMLQRYKGLGEMNADQLW 589

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET MD   RTL+RV+I+         +  +  LMG K + R K+I+   +F
Sbjct: 590 ETTMDPESRTLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIESNVAF 636


>gi|306829671|ref|ZP_07462861.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus mitis ATCC
           6249]
 gi|304428757|gb|EFM31847.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus mitis ATCC
           6249]
          Length = 647

 Score =  599 bits (1543), Expect = e-169,   Method: Composition-based stats.
 Identities = 240/653 (36%), Positives = 366/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEK-VRNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   I+ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGAIYRQRFENGGKPVTTLKKIGTAAKSKTGTKVTFMPDASIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V    +  +         E  EF++  G++ ++    E+
Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDETIEFHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++      + E  G     VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KETLTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V++ + +    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 IVDSIVAEKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +++ ++F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|331266192|ref|YP_004325822.1| DNA topoisomerase IV subunit B [Streptococcus oralis Uo5]
 gi|326682864|emb|CBZ00481.1| DNA topoisomerase IV subunit B [Streptococcus oralis Uo5]
          Length = 647

 Score =  599 bits (1543), Expect = e-169,   Method: Composition-based stats.
 Identities = 240/653 (36%), Positives = 367/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEK-VRNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R  T++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGTVYKQRFENGGKPVTTLQKVGTAAKSKTGTKVTFMPDASIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V    +  +         E  EF++  G++ ++    E+
Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TEEAIEFHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++      + E  G     VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KETLTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V++ + +    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 IVDSIVAEKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +++ ++F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LASAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|229031253|ref|ZP_04187259.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH1271]
 gi|228730011|gb|EEL80985.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH1271]
          Length = 654

 Score =  599 bits (1543), Expect = e-169,   Method: Composition-based stats.
 Identities = 240/651 (36%), Positives = 361/651 (55%), Gaps = 36/651 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AG+ + I V + 
Sbjct: 7   QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V+D GRG+P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 67  KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L VT+ R   I+ Q+F  G +P++ LEK  K +   GT + F+PD  IF     
Sbjct: 125 NALSEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 182

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L +  +  A+L   +K     ++   E       + F++  G++ ++    E + 
Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DVFHYETGIEAFVSYLNEEKD 235

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I   +     E+ G      E A  + +     I S+ N + T +GGTHE+G + A+TR
Sbjct: 236 SIHPVV-YFTGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA       ++  ++   D+      I+SV + E   +F GQTK KL + +A+ ++
Sbjct: 292 VFNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSI 351

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453
           +  + +   ++L +NP  AT L+   ++ ++ R   RK RE  R    +K     L GKL
Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAVKAAQAREAARKAREEARTGKKKKKSEGTLSGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I
Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A+G    +++  ED+ Y+KV+IMTDAD DGAHI  LLLTFFY+ M  LIE   +F
Sbjct: 472 NTIIYAIGGGVGNEFAVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G        YA  +E    + ++  K       + R+KGLGEM A QL 
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGK----GYMLQRYKGLGEMNADQLW 587

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV+I+         +  +  LMG K + R K+I+    F
Sbjct: 588 ETTMNPETRTLIRVKIDDASR----AERRVTTLMGDKVEPRRKWIERNVQF 634


>gi|149915418|ref|ZP_01903945.1| DNA topoisomerase IV subunit B [Roseobacter sp. AzwK-3b]
 gi|149810707|gb|EDM70548.1| DNA topoisomerase IV subunit B [Roseobacter sp. AzwK-3b]
          Length = 652

 Score =  599 bits (1543), Expect = e-169,   Method: Composition-based stats.
 Identities = 347/652 (53%), Positives = 452/652 (69%), Gaps = 10/652 (1%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           + + S +YDASSI +LEGLEPVR RPGMYIGGTDE+ALHHL +E++DN+MDE +AG+AN 
Sbjct: 7   SATDSSDYDASSIEVLEGLEPVRKRPGMYIGGTDERALHHLVAEILDNSMDEAVAGHANR 66

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV L  +  LTV DNGRGIP++ HPKFP+KS LE+IL TLHAGGKF    Y+ SGGLHG
Sbjct: 67  IEVELHEDYALTVRDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFGGKAYQTSGGLHG 126

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALSD + V VAR   ++ Q+FSRG+PL P++K  +  N+RGT ITF  D +IF
Sbjct: 127 VGASVVNALSDSMVVQVARNKELYEQRFSRGVPLGPIQKIGQAPNRRGTTITFHADEQIF 186

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
           G    F  ARL    +SKAYL   V+  W   K        P +  F+FPGGL  YL+  
Sbjct: 187 GS-HRFKPARLFNSIRSKAYLFSGVEIRW---KSAITDGDTPTEATFHFPGGLSDYLRET 242

Query: 277 LENRSLISSEIFTG--KTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESG 333
           +   S  + + F G    +++    G VEWAI W    +  + SYCNT+ T EGGTH +G
Sbjct: 243 MNGASTYADQPFAGTVDFQERFGMPGKVEWAINWTPSRDGSLQSYCNTVPTPEGGTHVAG 302

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
              A+ +GIK Y EL  N++A +I  +DLM     ++S FIREPEF GQTK +L + +AQ
Sbjct: 303 FWAAILKGIKGYGELVNNRKATNITREDLMAGGCALVSCFIREPEFVGQTKDRLATTEAQ 362

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
           R VENA+RD FD++L  +   A  +L++++ R+EERLRRR+++E  RKTA +KLRLPGKL
Sbjct: 363 RLVENAVRDHFDNWLAADTKSAGAILDFLVLRAEERLRRRQEKETQRKTATKKLRLPGKL 422

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
            DCS N+  GTELFIVEGDSAGGSAK  R+R  QA+LPLRGKILNV  A S K+ +NQ+I
Sbjct: 423 VDCSSNVRDGTELFIVEGDSAGGSAKMGRDRKTQALLPLRGKILNVLGAASSKLGSNQEI 482

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            DL QALG    S++  +DLRY+K+IIMTDADVDGAHIASLL+TFF+ +M  +I+  HL+
Sbjct: 483 ADLTQALGVGLGSKFNIDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPMIDAGHLY 542

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           L  PPL+R+TQG K VY  D+  +   ++     GKGKI++SRFKGLGEM A  LKET M
Sbjct: 543 LACPPLYRLTQGAKRVYCLDQAERDAWMK-KGLGGKGKIDVSRFKGLGEMDAKDLKETTM 601

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D   R L+RV I++D     +T D + +LMG K + RF++I E A F++++ 
Sbjct: 602 DPKTRKLIRVTIDEDE--PGETGDLVERLMGKKPELRFQYISENARFVEELD 651


>gi|254460660|ref|ZP_05074076.1| DNA topoisomerase IV, B subunit [Rhodobacterales bacterium
           HTCC2083]
 gi|206677249|gb|EDZ41736.1| DNA topoisomerase IV, B subunit [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 651

 Score =  599 bits (1543), Expect = e-169,   Method: Composition-based stats.
 Identities = 348/646 (53%), Positives = 451/646 (69%), Gaps = 10/646 (1%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +YDASSI +LEGLEPVR RPGMYIGGTDE+ALHHL +EV+DN+MDE +AG+A+ IEV L 
Sbjct: 12  DYDASSIEVLEGLEPVRKRPGMYIGGTDERALHHLVAEVLDNSMDEAVAGHASRIEVELL 71

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  + + DNGRGIP++ HPKFP+KS LE+IL TLHAGGKF    YE SGGLHGVG SVV
Sbjct: 72  SDYSMVIKDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGDAYETSGGLHGVGASVV 131

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALSD + V VAR   ++ Q+FSRGIPL P+EK     N+RGT +TF  D +IFG    F
Sbjct: 132 NALSDSMVVQVARNKELYEQRFSRGIPLGPVEKVGAAPNRRGTTVTFHADEQIFGS-HRF 190

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
             ARL K  +SKAYL   V+  W  + +  E    P    F+FPGGL  YL   L + S 
Sbjct: 191 KPARLFKSIRSKAYLFSGVEIRWKSEIDDGE---TPTTATFHFPGGLADYLTESLGSAST 247

Query: 283 ISSEI--FTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLRVALT 339
            + +   +    ++K    G VEWAI W    +  I SYCNT+ T EGGTHE+G   A+ 
Sbjct: 248 YADKPFAWVVDFKEKFNAPGKVEWAINWTPSRDGFIQSYCNTVPTPEGGTHEAGFWAAIL 307

Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +GI+ Y EL+ NK+A SI  DDL+     ++S FIREPEF GQTK +L +++AQ+ VE A
Sbjct: 308 KGIRAYGELSNNKKAASITRDDLVTGGCALVSCFIREPEFVGQTKDRLATVEAQKFVEGA 367

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
           +RD FD++L  +   A  +L++++ R+EERLRRR+++E  RK+A +KLRLPGKL DCS +
Sbjct: 368 VRDHFDNWLAADTKSAGAILDFLVLRAEERLRRRQEKETARKSATKKLRLPGKLVDCSNS 427

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
              GTELFIVEGDSAGGSAK  RNR  QA+LPL+GKILNV  A S KI  NQ+I DL QA
Sbjct: 428 NREGTELFIVEGDSAGGSAKMGRNRKTQALLPLKGKILNVLGAASGKIGTNQEINDLTQA 487

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           LG    +++  +DLRYEKVIIMTDADVDGAHIA+LL+TFF+ +M  +I+  HL+L  PPL
Sbjct: 488 LGVGLGTKFNVDDLRYEKVIIMTDADVDGAHIAALLMTFFFSQMRPMIDAGHLYLACPPL 547

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           FR+TQG   VY  DE  K+  LE+    G+GKI++SRFKGLGEM A  LK+T M+   R 
Sbjct: 548 FRLTQGANRVYCLDEAEKKYHLEK-GLGGRGKIDVSRFKGLGEMDAKDLKDTTMNPETRK 606

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           L+RV I++D     +T D + +LMG K ++RF++IQE A F++++ 
Sbjct: 607 LIRVTIDEDE--PGETGDLVERLMGKKPEKRFEYIQENAQFVEELD 650


>gi|254441649|ref|ZP_05055142.1| DNA topoisomerase IV, B subunit [Octadecabacter antarcticus 307]
 gi|198251727|gb|EDY76042.1| DNA topoisomerase IV, B subunit [Octadecabacter antarcticus 307]
          Length = 652

 Score =  599 bits (1543), Expect = e-169,   Method: Composition-based stats.
 Identities = 342/652 (52%), Positives = 436/652 (66%), Gaps = 10/652 (1%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           +     NYDASSI +LE +E VR+RPGMYIGG D++ALHH+ +E++DN+MDE +AG+A  
Sbjct: 7   SGQTPSNYDASSIEVLEDMEHVRLRPGMYIGGKDDRALHHMVAEIVDNSMDEAVAGHATW 66

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV L  NG  TV DNGRGIPV  HPK PNKS LE+I  TL+AGGKF   +Y+ SGGLHG
Sbjct: 67  IEVELHANGHATVRDNGRGIPVGMHPKLPNKSALEVIFCTLNAGGKFSGDSYQTSGGLHG 126

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALSD L V VA    +F  +FSRG+P +PL K     N+RGT +TF PDP+IF
Sbjct: 127 VGSSVVNALSDHLRVEVAINKELFMMEFSRGVPQAPLAKIGAAPNRRGTAVTFHPDPEIF 186

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
           G       ARL KM +SKAYL   V+  W  D    E    P++  F FPGGL  YL   
Sbjct: 187 GS-LDLKPARLFKMARSKAYLFSGVEIRWKTDINDGE---TPQEATFKFPGGLADYLNET 242

Query: 277 LENRSLISSEIFTGKTE--KKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESG 333
           L   +  S + F G  +   K    G VEWAI W    +  I SYCNT+ T EGGTHE G
Sbjct: 243 LAGATTYSEKPFAGTVDFTDKFNVPGKVEWAINWTPTRDGFIQSYCNTVPTPEGGTHEQG 302

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
              A+ +GIK Y E   NK+A +I  +DL   A  ++S FIR+PEF GQTK +L + DA 
Sbjct: 303 FWAAVLKGIKSYGERVNNKKATNITREDLTTGAGALVSCFIRDPEFVGQTKDRLATTDAL 362

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
           R V+ A+ D FD++L  +   A  +L++++ R+EERLRR++++E +RKTA  KLRLPGKL
Sbjct: 363 RMVQLAVADHFDNWLAADTKSAGAILDFLVLRAEERLRRKQEKETSRKTATAKLRLPGKL 422

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
            DCS     GTELFIVEGDSAGGSAK ARNR  QA+LPL+GKILNV  A S K+  N +I
Sbjct: 423 TDCSNKSRDGTELFIVEGDSAGGSAKMARNRKTQALLPLKGKILNVLGAASNKLGTNAEI 482

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            DL QALG +  +++  +DLRYEKVIIMTDADVDGAHIA+LL+TFF+ +M  +I+  HL+
Sbjct: 483 SDLTQALGVQLGAKFNVDDLRYEKVIIMTDADVDGAHIAALLMTFFFSQMRPMIDAGHLY 542

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           L  PPLFR+TQG +  Y  DE  K  IL      G GK+++SRFKGLGEM A  LKET M
Sbjct: 543 LACPPLFRVTQGARREYCLDEVEKNAILAR-GLGGSGKMDVSRFKGLGEMDAKDLKETTM 601

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D   R L++V I++D     +T D + +LMG K + RF++IQE A F++++ 
Sbjct: 602 DPKSRKLIKVSIDEDE--AGETADLVERLMGKKPEMRFQYIQENARFVEELD 651


>gi|323357952|ref|YP_004224348.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Microbacterium testaceum StLB037]
 gi|323274323|dbj|BAJ74468.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Microbacterium testaceum StLB037]
          Length = 677

 Score =  598 bits (1542), Expect = e-169,   Method: Composition-based stats.
 Identities = 248/680 (36%), Positives = 364/680 (53%), Gaps = 23/680 (3%)

Query: 23  LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82
            +    + + P   +    + Y A +I++LEGLE VR RPGMYIG T E+ LHHL  E++
Sbjct: 3   SENPDSVSEEPEAPSTKVPNEYGADAIQVLEGLEAVRKRPGMYIGSTGERGLHHLVQEIV 62

Query: 83  DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142
           DN++DE +AGY + I+V++  +G + VVDNGRGIPV+ H +   KST+E++LT LHAGGK
Sbjct: 63  DNSVDEALAGYCDTIDVTILSDGAVRVVDNGRGIPVDMH-RTEGKSTVEVVLTVLHAGGK 121

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           F    Y +SGGLHGVG SVVNALS  L V V RQ  ++ Q F  G       +K +  ++
Sbjct: 122 FGGGGYAVSGGLHGVGSSVVNALSTRLEVEVKRQGHVWRQSFRDGGQPLAPLEKGEESDQ 181

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------EIAEK 254
            GT ITF PD  IF     FD   L    Q  A+L+  ++     ++        E  E+
Sbjct: 182 TGTTITFWPDATIFDT-IDFDYDTLRTRFQQMAFLNKGLRISLRDERPQSVVVEGEPGEE 240

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR-GTVEWAIAWCEEN- 312
                 + F +  GL  Y++     R          + E + T R   +E A+ W     
Sbjct: 241 VTEARNDSFLYERGLVDYVEHLNRVRKADVVNDEIIEVESEDTDRHIALELAMQWTTAYT 300

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
             + +Y NTI T EGGTHE G R ALT  + +YA       ++  ++  DD+      ++
Sbjct: 301 ENVFTYANTINTHEGGTHEEGFRAALTTLVNRYARANNLLKEKDDNLTGDDIREGLTAVI 360

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV + EP+F GQTKTKL + +A+  V+  + D    +  +NP +A  ++   I+ +  RL
Sbjct: 361 SVKLSEPQFEGQTKTKLGNTEARAFVQKVVGDKLGDWFDRNPGQAKNIIRKAIDAATARL 420

Query: 431 RRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK RE  R+ +      +P KL DC+      +E+F+VEGDSAGGSA Q R+   QA+
Sbjct: 421 AARKARETARRKSVFESAAMPDKLKDCTSKDPSISEIFLVEGDSAGGSAVQGRDPHTQAI 480

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549
           L LRGKILNV  A  ++   N+++  ++QA G      +     RY K+++M DADVDG 
Sbjct: 481 LALRGKILNVERARLDRALGNKEVQAMIQAFGTGIGEDFDMAKARYHKIVLMADADVDGQ 540

Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHG 608
           HI +LLLT  ++ M  LIE   ++L  PPL+R+        YA+ +  +  +L + +  G
Sbjct: 541 HITTLLLTLLFRYMRGLIEAGFVYLAQPPLYRLKWSNHPHEYAYSDRERDAMLVDGQAAG 600

Query: 609 KGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT 665
           +   +   I R+KGLGEM   +L ET MD   RTL +V I+          +  + LMG 
Sbjct: 601 RRIPKDNGIQRYKGLGEMNDHELWETTMDPETRTLKQVTIDD----AAAADEIFSVLMGE 656

Query: 666 KADERFKFIQERASFIDDVG 685
             + R  FIQ  A  +  + 
Sbjct: 657 DVESRRSFIQRNAKDVRFLD 676


>gi|183219432|ref|YP_001837428.1| DNA gyrase subunit B [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189909578|ref|YP_001961133.1| DNA gyrase subunit B [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167774254|gb|ABZ92555.1| DNA gyrase subunit B [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167777854|gb|ABZ96152.1| DNA gyrase subunit B [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 639

 Score =  598 bits (1542), Expect = e-169,   Method: Composition-based stats.
 Identities = 251/657 (38%), Positives = 376/657 (57%), Gaps = 25/657 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            +NQ+  + Y AS I+ILEGLE VR RPGMYIG  DE  LH +  EV+DN++DE +AG+ 
Sbjct: 1   MSNQTDQNAYSASKIKILEGLEAVRKRPGMYIGTQDESGLHKMVYEVVDNSVDEAMAGHC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             I+V +     + V DNGRGIP   HP    KST+E++LT LHAGGKF+N  Y++SGGL
Sbjct: 61  TEIDVRILPENIIEVRDNGRGIPTGIHP-DKGKSTIEVVLTILHAGGKFENDAYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS  L V V ++  +  QK+  G+P+  ++   +    RGT + FRPD  
Sbjct: 120 HGVGVSVVNALSTYLEVEVHQEGKLHYQKYQAGVPVEDVKIIGETT-HRGTVVRFRPDHT 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     F    L    +  A+L+  +       ++            F F GG+ ++++
Sbjct: 179 IFTT-VDFSFDTLSARFREIAFLNKGLLIRIEDQRKEEFAKHE-----FKFDGGIVSFVE 232

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              E++  +   +     EK+       E A+ +C+     I  + N I  + GGTH  G
Sbjct: 233 YITESKHPLHKVLHFV-GEKENVW---AEIALQYCDTYSENIFCFTNAINNNLGGTHLEG 288

Query: 334 LRVALTRGIKKYAELTQ---NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
            R ALTR +  + +  Q    K+   +  DD+      ++S+ I +P+F  QTK KLV+ 
Sbjct: 289 FRTALTRTLNDHLKKDQTLFKKQPNGLQGDDIKEGLCAVISIKIPQPQFNSQTKEKLVNA 348

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           + +  ++    +  + Y  +NP    K+LE  I  S+ R   R+ R+   RKT +    L
Sbjct: 349 EVKGLMQTITGEGLNRYFEENPAIIKKILEKCILASKAREAARRARDLTRRKTVLEGGGL 408

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADCS+      ELF+VEGDSAGGSAKQ R+R+ QA+LPL+GKILNV  A  +KI +
Sbjct: 409 PGKLADCSEKDPEHCELFLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILS 468

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           N++I  L+  +G      ++  E LRY K+IIMTDADVDG+HI +LLLTFF++ M  +IE
Sbjct: 469 NEEIRTLITVMGTGIGDDEFNVEKLRYRKIIIMTDADVDGSHIRTLLLTFFFRYMKPVIE 528

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           +  L++  PPL+ +  G ++VY + +  K +IL+        K+ I R+KGLGEM   QL
Sbjct: 529 RGSLYVAQPPLYLLKFGKEAVYVYSDREKDEILKARPND---KVVIQRYKGLGEMNPEQL 585

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +T MD  +R +L+V++   +    + +D+ N LMG +   R +FI+  +  + ++ 
Sbjct: 586 WDTTMDPKERVMLQVKLQDFV----EAEDTFNILMGDEVSPRRRFIEANSYKVANLD 638


>gi|30021698|ref|NP_833329.1| DNA topoisomerase IV subunit B [Bacillus cereus ATCC 14579]
 gi|228959781|ref|ZP_04121456.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229047280|ref|ZP_04192879.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH676]
 gi|229128869|ref|ZP_04257845.1| DNA topoisomerase 4 subunit B [Bacillus cereus BDRD-Cer4]
 gi|29897253|gb|AAP10530.1| Topoisomerase IV subunit B [Bacillus cereus ATCC 14579]
 gi|228654574|gb|EEL10436.1| DNA topoisomerase 4 subunit B [Bacillus cereus BDRD-Cer4]
 gi|228724022|gb|EEL75368.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH676]
 gi|228799911|gb|EEM46853.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 654

 Score =  598 bits (1542), Expect = e-169,   Method: Composition-based stats.
 Identities = 242/651 (37%), Positives = 361/651 (55%), Gaps = 36/651 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AG+ + I V + 
Sbjct: 7   QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V+D GRG+P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 67  KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L VT+ R   I+ Q+F  G IP++ LEK  K +   GT + F+PD  IF     
Sbjct: 125 NALSEWLVVTIKRDGNIYEQRFENGGIPVTTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 182

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L +  +  A+L   +K     ++   E       + F++  G++ ++    E + 
Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DVFHYETGIEAFVSYLNEEKD 235

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I   +     E+ G      E A  + +     I S+ N + T +GGTHE+G + A+TR
Sbjct: 236 SIHPVV-YFTGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA       ++  ++   D+      I+SV + E   +F GQTK KL + +A+ ++
Sbjct: 292 VFNEYARKVALLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSI 351

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453
           +  + +   ++L +NP  AT L+   I+ ++ R   RK RE  R    +K     L GKL
Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARSGKKKKKSEGTLSGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I
Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A+G    +++  ED+ Y+KV+IMTDAD DGAHI  LLLTFFY+ M  LIE   +F
Sbjct: 472 NTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G        YA  +E    + ++  K       + R+KGLGEM A QL 
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGK----GYMLQRYKGLGEMNADQLW 587

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV+I+         +  +  LMG K + R K+I+    F
Sbjct: 588 ETTMNPETRTLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIERNVQF 634


>gi|238810228|dbj|BAH70018.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 644

 Score =  598 bits (1542), Expect = e-169,   Method: Composition-based stats.
 Identities = 257/655 (39%), Positives = 374/655 (57%), Gaps = 23/655 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + S  YDAS+I++LEGLE VR+RPGMYIG T  + LHHL  E++DN++DE +AG+AN +E
Sbjct: 4   NMSKEYDASNIKVLEGLEAVRVRPGMYIGTTGIRGLHHLIWEIVDNSVDEAMAGFANKVE 63

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           +++  +G++ V+DNGRGIP   HPK    ST+E +LT LHAGGKFD+ +Y++SGGLHGVG
Sbjct: 64  ITITKDGYIDVIDNGRGIPTAVHPK-TGLSTVETVLTVLHAGGKFDSDSYKVSGGLHGVG 122

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK--KEKVRNKRGTRITFRPDPKIF 216
            SVVN LSD+  V V R   +    F+ G  +        E      GTRI F PD  I 
Sbjct: 123 ASVVNGLSDDFEVWVKRDGKLHYAHFNNGGKILQHLTILNEVDPQDTGTRIKFHPDFSIM 182

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                +D   ++   +  AYL+  ++   + +++         +EE++F GG+  Y++  
Sbjct: 183 DKN-EWDKGVIVDHAKQIAYLNKGLRIIVNDERD-------KSREEYHFEGGIVDYVKEL 234

Query: 277 LENRSLISSEIFTGKTEK--KGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHESG 333
              + LI  ++   + E   + +    VE A+ + E     + SY N I+T EGGTHESG
Sbjct: 235 NTGQKLIHPDVIYAEGEYSFQDSPAVQVEVAVQYNERITGNVVSYANNIITVEGGTHESG 294

Query: 334 LRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
              AL R +  Y       +     +  +D+    V I+SV    P F GQTK KL + D
Sbjct: 295 FYDALVRLVNNYGTECGLIKTEEDKVTREDVREGIVAIISVKHTNPIFEGQTKGKLGNKD 354

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLP 450
           A+  V     D F+ +L +NP EA  +++  I   + RL     R+   RKT      LP
Sbjct: 355 ARMAVNKVFSDSFERFLNENPAEAKTIVQKTIFAKKSRLAGLAARDAARRKTVFDTGSLP 414

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS   A  +EL+IVEG+SAGGSAK  RNR  QA+LPLRGK++N      +K+  N
Sbjct: 415 GKLADCSSKNAEISELYIVEGNSAGGSAKMGRNRMTQAILPLRGKVINAEKNQPKKVFAN 474

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
            +I+ L+ ALG     ++    LRY K+IIMTDADVDGAHI +LLLTFFY+    LIE  
Sbjct: 475 AEILSLITALGTGVGEEFNINKLRYHKIIIMTDADVDGAHIRTLLLTFFYRYFRPLIEYG 534

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
            +++  PPL++I Q     YA+++  K++I++    +   K+ + R+KGLGEM   QL E
Sbjct: 535 FIYIAQPPLYKIAQNKFIGYAYNDAQKEEIMQGL--NQNQKVTVQRYKGLGEMDPEQLWE 592

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T MD   R +L+V+I            +   LMG +   R +FI++ A ++ ++ 
Sbjct: 593 TTMDPVNRKMLQVQIED----AARADWAFTTLMGDEVLPRREFIEQNAKYVKNID 643


>gi|7437446|pir||S70991 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain B -
           Mycobacterium smegmatis
 gi|1321898|emb|CAA63253.1| gyrB [Mycobacterium smegmatis]
          Length = 706

 Score =  598 bits (1542), Expect = e-169,   Method: Composition-based stats.
 Identities = 255/717 (35%), Positives = 372/717 (51%), Gaps = 56/717 (7%)

Query: 3   DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRP 62
           DD     S  PP                   A    +A   Y A SI ILEGLE VR RP
Sbjct: 11  DDGSQAVSAPPPSEPQGDASDV---------AAQKNNAPKEYGADSITILEGLEAVRKRP 61

Query: 63  GMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122
           GMYIG T E+ LHHL  EV+DNA+DE +AG+A  ++V +  +G + V D+GRGIPVE H 
Sbjct: 62  GMYIGSTGERGLHHLIWEVVDNAVDEAMAGFATRVDVKIHADGSVEVRDDGRGIPVEMH- 120

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
                 T+++++T LHAGGKFD  TY +SGGLHGVG+SVVNALS  L  TV R    + Q
Sbjct: 121 -ATGMPTIDVVMTQLHAGGKFDGETYAVSGGLHGVGVSVVNALSTRLEATVLRDGYEWFQ 179

Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
            + R +P     K+     + GT I F  DP+IF     ++   + +  Q  A+L+  + 
Sbjct: 180 YYDRSVPGKL--KQGGETKETGTTIRFWADPEIFET-TDYNFETVARRLQEMAFLNKGLT 236

Query: 243 TCWSCDKEIAEKYGIP-------------------------EKEEFYFPGGLKTYLQTKL 277
              + ++  AE+                             +   F++PGGL  Y++   
Sbjct: 237 IELTDERVTAEEVVDDVVKDTAEAPKTADEKAAEATGPSKVKHRVFHYPGGLVDYVKHIN 296

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
             ++ I   I     +  G     VE A+ W       + ++ NTI T EGGTHE G R 
Sbjct: 297 RTKTPIQQSIIDFDGKGPGH---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRA 353

Query: 337 ALTRGIKKY--AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALT  + +Y   +     +  ++  DD+      ++SV + EP+F GQTKTKL + + + 
Sbjct: 354 ALTSVVNRYAKDKKLLKDKDPNLTGDDIREGLAAVISVKVAEPQFEGQTKTKLGNTEVKS 413

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            V+    +   H+   NP EA  ++   +  ++ R+  RK RE V RK+A     LPGKL
Sbjct: 414 FVQKICNEQLQHWFEANPAEAKTVVNKAVSSAQARIAARKARELVRRKSATDIGGLPGKL 473

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC       +EL++VEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++
Sbjct: 474 ADCRSTDPSKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEV 533

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ ALG     ++    LRY K+++M DADVDG HI++LLLT  ++ M  L+E  H+F
Sbjct: 534 QSIITALGTGIHDEFDISKLRYHKIVLMADADVDGQHISTLLLTLLFRFMKPLVENGHIF 593

Query: 574 LISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIE----ISRFKGLGEMLASQL 628
           L  PPL+++     +  +A+ +  +  +LE  +  GK KI     I R+KGLGEM A +L
Sbjct: 594 LAQPPLYKLKWQRSEPEFAYSDRERDGLLEAGRAAGK-KINVDDGIQRYKGLGEMDAKEL 652

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            ET MD + R L +V ++          +  + LMG   + R  FI   A  +  + 
Sbjct: 653 WETTMDPSVRVLRQVTLDD----AAAADELFSILMGEDVEARRSFITRNAKDVRFLD 705


>gi|307331912|ref|ZP_07611008.1| DNA gyrase, B subunit [Streptomyces violaceusniger Tu 4113]
 gi|306882430|gb|EFN13520.1| DNA gyrase, B subunit [Streptomyces violaceusniger Tu 4113]
          Length = 676

 Score =  598 bits (1542), Expect = e-169,   Method: Composition-based stats.
 Identities = 259/676 (38%), Positives = 375/676 (55%), Gaps = 19/676 (2%)

Query: 18  GSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHL 77
            S   ++      DS A A  S    YDAS+I +LEGLE VR RPGMYIG T E+ LHHL
Sbjct: 11  DSGNPIENIPSTSDSEALAPPS----YDASAITVLEGLEAVRKRPGMYIGSTGERGLHHL 66

Query: 78  FSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137
             EV+DN++DE +AG+A+ IEV++  +G + VVDNGRGIPV   P    K  +E++LT L
Sbjct: 67  VQEVVDNSVDEAMAGHADSIEVTILADGGVRVVDNGRGIPVGIVP-SEGKPAVEVVLTVL 125

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKF    Y +SGGLHGVG+SVVNALS ++ V V      ++Q +  G P +PL + E
Sbjct: 126 HAGGKFGGGGYAVSGGLHGVGVSVVNALSSKVSVEVKTDGYRWTQDYKTGAPTAPLARNE 185

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE-IAEKYG 256
                 GT +TF  DP +F     +    L +  Q  A+L+  +      ++E   ++ G
Sbjct: 186 ATEE-TGTTVTFWADPDVFET-TEYSFETLARRFQEMAFLNKGLSISLKDEREAHVDEEG 243

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
            P   ++Y+ GG+  ++      +  +      G   +      ++E A+ W  +    +
Sbjct: 244 KPLSVKYYYEGGIVDFVTYLNSRKGELVHPTVIGFEAEDKERLLSLEIAMQWNTQYTEGV 303

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVF 373
            S+ NTI T EGGTHE G R ALT  I KYA   +   +R  ++  +D+      I+SV 
Sbjct: 304 YSFANTIHTHEGGTHEEGFRAALTYLINKYARDKKLLRERDDNLTGEDIREGLTAIISVK 363

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + EP+F GQTKTKL + +A+  V+  + +    +L + P EA  ++   I+ +  R+  R
Sbjct: 364 LGEPQFEGQTKTKLGNTEAKTFVQKVVNEHLADWLDRYPNEAADIVRKGIQAATARVAAR 423

Query: 434 KQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           K R++ R+   +    LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+
Sbjct: 424 KARDLTRRKGLLETASLPGKLSDCQSNDPSKCEIFIVEGDSAGGSAKSGRNPQYQAILPI 483

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIA 552
           RGKILNV  A  +KI  N ++  L+ A G      +  + LRY K+I+M DADVDG HI 
Sbjct: 484 RGKILNVEKARVDKILQNNEVQALISAFGTGVHEDFDIDKLRYHKIILMADADVDGQHIN 543

Query: 553 SLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGK-- 609
           +LLLTF ++ M  L+E  H+FL  PPL++I  G     YA+ +  +  +++  +  GK  
Sbjct: 544 TLLLTFLFRFMRPLVEAGHVFLSRPPLYKIKWGRDDFEYAYSDRERDALIQAGRAQGKRI 603

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669
               + RFKGLGEM A +L+ T MD + R L +V ++          D  + LMG   + 
Sbjct: 604 RDDSVQRFKGLGEMNAEELRITTMDPDHRVLGQVTLDD----AAQADDLFSVLMGEDVEA 659

Query: 670 RFKFIQERASFIDDVG 685
           R  FIQ  A  +  + 
Sbjct: 660 RRSFIQRNAKDVRFLD 675


>gi|293363557|ref|ZP_06610313.1| DNA gyrase, B subunit, C-terminal domain protein [Mycoplasma
           alligatoris A21JP2]
 gi|292552906|gb|EFF41660.1| DNA gyrase, B subunit, C-terminal domain protein [Mycoplasma
           alligatoris A21JP2]
          Length = 646

 Score =  598 bits (1542), Expect = e-169,   Method: Composition-based stats.
 Identities = 254/659 (38%), Positives = 369/659 (55%), Gaps = 27/659 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
             + NYDAS+I+ LEGLE VR RPGMYIG T +  LHH+  E++DN++DE +AG+A+ I 
Sbjct: 2   EKAHNYDASNIKFLEGLEHVRKRPGMYIGTTSKDGLHHMIWEIVDNSVDECMAGFASKIF 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           +++  +  + V DNGRGIPV  H +F   S LE++LT L+AGGKF+++ Y++SGGLHGVG
Sbjct: 62  ITITNDNRIIVEDNGRGIPVGTHERF-GISALEVVLTKLNAGGKFESNAYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVR-NKRGTRITFRPDPKIF 216
            SVVNALSD +   V R   I+  +F+ G   +       +   N+ GT+I F PD  I 
Sbjct: 121 ASVVNALSDSMKAWVKRDGKIYHAEFANGGHTVQATHVIGEYEGNETGTKIEFHPDFSIM 180

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   FD   ++   +  A+L+  +       ++ +        EEF +  G+  Y++  
Sbjct: 181 ENVP-FDKELIIDHAKQIAHLNKSLFVSVKDLRDDS-------YEEFKYDNGIIDYVREL 232

Query: 277 LENRSLISSEIFTGKTEKKGTHRGT-----VEWAIAWCEENPEITSYCNTIL--TDEGGT 329
            E  S I+ EI   + E    H G      VE A  +  + P            T EGGT
Sbjct: 233 NEGYSPINPEIIFAEGEFLSVHNGQERQIGVEVAAQYLSDFPRSNIISYANNISTHEGGT 292

Query: 330 HESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H SG   ++ R +  YA      +        +DL      I+SV   +P+F GQTK KL
Sbjct: 293 HVSGFYDSVMRIVNNYAIENGIIKTDAEKFSREDLTEGLTTIISVKHPDPQFEGQTKGKL 352

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRK 446
            S DA+  V     + ++  L +NP+ A K++E  I   + RL     R+   RK+A   
Sbjct: 353 GSKDARMAVNKVFSEVYERMLNENPLIAKKIIENAIYARKGRLAANAARDNAKRKSAFDN 412

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC+   A  +EL++VEG+SAGGSAK  R+R+ QA+LPLRGK+LNV  A  +K
Sbjct: 413 GGLPGKLADCATKNAELSELYLVEGNSAGGSAKMGRDRNTQAILPLRGKVLNVERARQDK 472

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           + NN++IM LV ALG      +    LRY K++IMTDADVDGAHI +LLLTFFY+    L
Sbjct: 473 VVNNEEIMSLVTALGTSLGDTFNINKLRYHKIVIMTDADVDGAHIRTLLLTFFYRYFKPL 532

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           IE   +++  PPL++I Q     YA+++  K++I  +   +   KI I R+KGLGEM   
Sbjct: 533 IEYGFVYIAQPPLYKIQQNKTVEYAYNDAQKEEITSKL--NPNQKINIQRYKGLGEMDPD 590

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           QL ET MD   R +L+V+I            + + LMG   + R +FI++ A ++ ++ 
Sbjct: 591 QLWETTMDPKNRKMLQVQIEDAYK----ADWAFSTLMGENVEPRREFIEKNAKYVKNID 645


>gi|73916368|gb|AAZ93052.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
          Length = 647

 Score =  598 bits (1542), Expect = e-169,   Method: Composition-based stats.
 Identities = 240/653 (36%), Positives = 365/653 (55%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKVGTAPKSKTGTKVTFMPDATIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V    +  +         E  EF++  G++ ++    E+
Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           + +++      + E  G     VE A+   +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQHNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +++ ++F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|270292568|ref|ZP_06198779.1| topoisomerase IV, subunit B [Streptococcus sp. M143]
 gi|270278547|gb|EFA24393.1| topoisomerase IV, subunit B [Streptococcus sp. M143]
          Length = 647

 Score =  598 bits (1542), Expect = e-169,   Method: Composition-based stats.
 Identities = 241/653 (36%), Positives = 366/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVEDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R  T++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V    +  +         E  EF++  G++ ++    E+
Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++      + E  G     VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KETLTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +++ ++F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|37522075|ref|NP_925452.1| DNA gyrase subunit B [Gloeobacter violaceus PCC 7421]
 gi|35213074|dbj|BAC90447.1| DNA gyrase subunit B [Gloeobacter violaceus PCC 7421]
          Length = 644

 Score =  598 bits (1542), Expect = e-169,   Method: Composition-based stats.
 Identities = 253/655 (38%), Positives = 369/655 (56%), Gaps = 23/655 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y A  I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AG+   I +S
Sbjct: 2   TETYGAEQIQVLEGLEHVRKRPGMYIGSTGPRGLHHLVYEIVDNSVDEALAGHCKHIAIS 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +G  T+ D+GRGIP + HP+   KST+E +LT L AGGKF    Y++SGGLHGVG +
Sbjct: 62  LGADGSATITDDGRGIPTDTHPR-TGKSTIETVLTVLGAGGKFGGGGYKVSGGLHGVGAA 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  L  T+ R+   + Q+F RGIP   L      + +RGT I+F PDP+IF    
Sbjct: 121 VVNALSTILTATIWREGKQYIQRFHRGIPEGGLAVSSDSQKRRGTMISFLPDPEIFTTGV 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   LL   +  A+L+  V+  +S  +   E+      E + + GG++ Y++     +
Sbjct: 181 DFDFDTLLSRFRELAFLNAGVEFRFSDLRGETERT-----ESYIYEGGIREYVKYMTREK 235

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
           + +  +I     E+ G          +    N  +  + N I T +GGTH  GL+  LTR
Sbjct: 236 AALHPDIIFINQERDGV-SVECALQWSTDVYNDNVLGFANNIRTIDGGTHLEGLKAVLTR 294

Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
               +A      +    ++  + +      +LSV +  PEF GQTKTKL + + +  V+ 
Sbjct: 295 TFNSFARKANKLKDGDKNLTGEHVREGLTAVLSVKVPNPEFEGQTKTKLGNPEVRGIVDG 354

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            + +    YL  +P     +LE  ++  +     RK R+ V RK+A+    LPGKLADC 
Sbjct: 355 VISEKLTEYLEFHPDVVASILEKALQSMQAEEAARKARDLVRRKSALESSTLPGKLADCQ 414

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +E+F+VEGDSAGGSAKQ R+R  QA+LPLRGKILN+  A   KI  N +I  ++
Sbjct: 415 SRDPAESEVFLVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERADDRKIYGNNEIQAMI 474

Query: 518 QALGCRTRSQYREE-DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             LG   +++  +   LRY ++IIMTDADVDGAHI +LLLTFFY+   DL+EQ ++++  
Sbjct: 475 TGLGLGLKTEEFDVGRLRYHRIIIMTDADVDGAHIRTLLLTFFYRYKRDLVEQGYIYIAQ 534

Query: 577 PPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           PPL++I+ G        Y + E+ K+ IL   +++   K E+ RFKGLGEM A QL ET 
Sbjct: 535 PPLYKISIGGGRNIDVRYCYSEQEKEAILRGLREN--QKYELQRFKGLGEMQADQLWETT 592

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685
           M+   RTL +V I        +     N LMG + + R +FI+     +   D+ 
Sbjct: 593 MNPETRTLRQVTIED----AAEADRVFNILMGDRVEPRREFIETYGPRLQMADLD 643


>gi|28378501|ref|NP_785393.1| DNA topoisomerase IV subunit B [Lactobacillus plantarum WCFS1]
 gi|254556715|ref|YP_003063132.1| DNA topoisomerase IV subunit B [Lactobacillus plantarum JDM1]
 gi|300767447|ref|ZP_07077359.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308180658|ref|YP_003924786.1| DNA topoisomerase IV subunit B [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|28271337|emb|CAD64242.1| topoisomerase IV, subunit B [Lactobacillus plantarum WCFS1]
 gi|254045642|gb|ACT62435.1| DNA topoisomerase IV subunit B [Lactobacillus plantarum JDM1]
 gi|300495266|gb|EFK30422.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308046149|gb|ADN98692.1| DNA topoisomerase IV subunit B [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 668

 Score =  598 bits (1542), Expect = e-169,   Method: Composition-based stats.
 Identities = 248/660 (37%), Positives = 358/660 (54%), Gaps = 35/660 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
             S  YD SSI++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DE +AGY   I 
Sbjct: 3   KKSPKYDDSSIQVLEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALAGYGKEIN 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V +  +  +TVVD+GRG+PV  H       T E+ILT LHAGGKF    Y+ SGGLHGVG
Sbjct: 63  VIIHADNSITVVDHGRGMPVGMH--ASGIPTPEVILTVLHAGGKFGQGGYKTSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
            SVVNALS EL VT+ R    + + F   G P+  LEKK K     GT +TF+PD  IF 
Sbjct: 121 ASVVNALSSELTVTIVRDGYRYVEHFKDGGHPVGTLEKKGKTNKPTGTTMTFKPDASIFT 180

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               ++   L +  +  A+L   VK   + ++E  ++  +     F++  G+K ++    
Sbjct: 181 TTV-YNFQTLAERLRESAFLLKGVKITLTDERENQQQELV-----FHYEDGIKAFVSYLN 234

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRV 336
           E++  +  +I      K+G     VE A  + +   E   S+ N + T +GGTHE G R 
Sbjct: 235 EDKDTLG-DIMFFDGTKEGV---EVEVAAQYNDGYSENLLSFVNNVRTPDGGTHEVGFRS 290

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392
           A T+   +YA        +  ++   D+      ++S+ + E   +F GQTK KL + +A
Sbjct: 291 AWTKAFNEYARKVGLLKDKDKNLEGSDVREGLSAVISLRVPENLLQFEGQTKEKLGTPEA 350

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---L 449
           +  V+N + +    +L++N   A  L+    +  + R   RK R+ +R    R  +   L
Sbjct: 351 RTIVDNIVSEQLQFFLMENGEFAQMLIRKSTKARQAREAARKARDESRNGKRRHKQERLL 410

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
            GKL       A   ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  
Sbjct: 411 SGKLTPAQSKNAKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLADIVK 470

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N++I  ++  +G     ++  +   Y+K+IIMTDAD DGAHI  LLLTFFY+ M  +I+ 
Sbjct: 471 NEEINTMIYTIGAGVGPEFDIKASNYDKIIIMTDADTDGAHIQILLLTFFYKYMRPMIDA 530

Query: 570 KHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
             +++  PPL+R+ +      ++ YA  +E      + F K       + R+KGLGEM A
Sbjct: 531 GKIYIALPPLYRLQKKQNKQLRTEYAWTDEELTLKTKSFGK----GYALQRYKGLGEMNA 586

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL ET MD  KRTL+RV I+         +  +  LMG K + R K+I+    F  ++ 
Sbjct: 587 EQLWETTMDPEKRTLVRVRIDD----AALAEKRVTTLMGDKVEPRRKWIESNVHF--NLD 640


>gi|73916364|gb|AAZ93050.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916380|gb|AAZ93058.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
          Length = 647

 Score =  598 bits (1542), Expect = e-169,   Method: Composition-based stats.
 Identities = 240/653 (36%), Positives = 366/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKVGTAPKSKTGTKVTFMPDATIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V    +  +         E  EF++  G++ ++    E+
Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           + +++      + E  G     VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +++ ++F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|148557472|ref|YP_001265054.1| DNA topoisomerase IV subunit B [Sphingomonas wittichii RW1]
 gi|148502662|gb|ABQ70916.1| DNA topoisomerase IV, B subunit [Sphingomonas wittichii RW1]
          Length = 660

 Score =  598 bits (1542), Expect = e-169,   Method: Composition-based stats.
 Identities = 357/653 (54%), Positives = 467/653 (71%), Gaps = 7/653 (1%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A A  ++S NYDAS+I +LEGLEPVR RPGMYIGGTDE+A HHL +EV+DNAMDE +AG+
Sbjct: 7   ASAPSTSSGNYDASAIEVLEGLEPVRRRPGMYIGGTDERAYHHLAAEVLDNAMDEAVAGH 66

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           AN IEVSL     LTV+DNGRGIPV+ HPKFP KS LE+IL+TLH+GGKF +  Y  SGG
Sbjct: 67  ANRIEVSLQVGNRLTVIDNGRGIPVDPHPKFPGKSALEVILSTLHSGGKFSDKAYATSGG 126

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS E  + VAR   +F Q+FSRG  L P+EK     N+RGT ++F PDP
Sbjct: 127 LHGVGVSVVNALSTETVIEVARNKELFRQRFSRGTTLGPIEKLGAAPNRRGTSVSFTPDP 186

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IFG  A F   RL+++ +SKAYL   V+  W CD  +      P    F FPGGL  +L
Sbjct: 187 EIFGPSAHFRPGRLMRLARSKAYLFAGVEIRWKCDPSLIGDD-TPSDAVFQFPGGLSDHL 245

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHES 332
           + ++ +R   +S+ F+GK +     +G+VEWA+AW        + YCNTI T +GGTHE+
Sbjct: 246 REQIGDRECATSQFFSGK-QDFADGQGSVEWAVAWPLWSEGSYSYYCNTIPTPDGGTHET 304

Query: 333 GLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           GLR AL +GI+ +AEL  NKRA  + +DD++  +  +LSVFIR+P+F  QTK +L S DA
Sbjct: 305 GLRAALVKGIRGFAELVGNKRAKDVTADDVVTGSEQMLSVFIRDPQFQSQTKDRLTSPDA 364

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLP 450
            R VENA+RD FDH+L  N      LL +V++R ++RLRR+ +R++ RKTA   RKLRLP
Sbjct: 365 ARLVENAVRDHFDHFLADNMERGKALLAFVLDRMDDRLRRKAERDIKRKTATSSRKLRLP 424

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL DC+ +   GTE+FIVEGDSAGGSAKQAR+R  QA+LP+RGKILNVASA S KI  N
Sbjct: 425 GKLTDCANDSPEGTEMFIVEGDSAGGSAKQARDRKTQAILPIRGKILNVASANSAKIGAN 484

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           Q+I D++QALGC +R +   + LRYE+++IMTDADVDGAHIA+LL+TFF+QEM DL+ + 
Sbjct: 485 QEIADIIQALGCGSRDKCNVDLLRYERIVIMTDADVDGAHIATLLMTFFFQEMPDLVREG 544

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           HL+L  PPL+R+T GTKS+YA D+EH+ +I  E  +    K+E++RFKGLGEM   QL+E
Sbjct: 545 HLYLAQPPLYRLTAGTKSLYARDDEHRAEI--EANEFKGKKVEVARFKGLGEMNPQQLRE 602

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
           T MD   RTLLRV + ++       +D +++LMG   + RF FIQ  A+ +DD
Sbjct: 603 TTMDPATRTLLRVTLPQEYEERASVRDLVDRLMGKNPEHRFAFIQANAASVDD 655


>gi|237650389|ref|ZP_04524641.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae CCRI 1974]
 gi|237822238|ref|ZP_04598083.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae CCRI
           1974M2]
 gi|73916450|gb|AAZ93093.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916466|gb|AAZ93101.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
          Length = 647

 Score =  598 bits (1542), Expect = e-169,   Method: Composition-based stats.
 Identities = 240/653 (36%), Positives = 366/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKVGTAPKSKTGTKVTFMPDATIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V    +  +         E  EF++  G++ ++    E+
Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           + +++      + E  G     VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +++ ++F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|73916358|gb|AAZ93047.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
          Length = 647

 Score =  598 bits (1542), Expect = e-169,   Method: Composition-based stats.
 Identities = 241/653 (36%), Positives = 367/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V    +  +         E  EF++  G++ ++    E+
Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           + +++      + E  G     VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D     V +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLVAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +++ ++F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|225854359|ref|YP_002735871.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae JJA]
 gi|225723890|gb|ACO19743.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae JJA]
          Length = 647

 Score =  598 bits (1542), Expect = e-169,   Method: Composition-based stats.
 Identities = 239/653 (36%), Positives = 365/653 (55%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V    +  +         E  EF++  G++ ++    E+
Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           + +++      + E  G     VE A+ + +   +   S+ N + T +GGTHE+G + A+
Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGFKSAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAVVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +++ ++F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|148984582|ref|ZP_01817850.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP3-BS71]
 gi|148993664|ref|ZP_01823111.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP9-BS68]
 gi|148997072|ref|ZP_01824726.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP11-BS70]
 gi|149007204|ref|ZP_01830868.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP18-BS74]
 gi|149021718|ref|ZP_01835749.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP23-BS72]
 gi|168490285|ref|ZP_02714484.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae SP195]
 gi|168493006|ref|ZP_02717149.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae
           CDC3059-06]
 gi|168575508|ref|ZP_02721444.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae MLV-016]
 gi|225858652|ref|YP_002740162.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae 70585]
 gi|225861253|ref|YP_002742762.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298229147|ref|ZP_06962828.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298255376|ref|ZP_06978962.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298503141|ref|YP_003725081.1| DNA topoisomerase [Streptococcus pneumoniae TCH8431/19A]
 gi|307067449|ref|YP_003876415.1| type IIA topoisomerase subunit B [Streptococcus pneumoniae AP200]
 gi|73916362|gb|AAZ93049.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916370|gb|AAZ93053.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916384|gb|AAZ93060.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916390|gb|AAZ93063.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916394|gb|AAZ93065.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916396|gb|AAZ93066.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916398|gb|AAZ93067.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916400|gb|AAZ93068.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916402|gb|AAZ93069.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916406|gb|AAZ93071.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916408|gb|AAZ93072.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916410|gb|AAZ93073.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916434|gb|AAZ93085.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916438|gb|AAZ93087.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916440|gb|AAZ93088.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916460|gb|AAZ93098.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|147756772|gb|EDK63812.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP11-BS70]
 gi|147761242|gb|EDK68209.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP18-BS74]
 gi|147922973|gb|EDK74088.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP3-BS71]
 gi|147927744|gb|EDK78767.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP9-BS68]
 gi|147930179|gb|EDK81165.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP23-BS72]
 gi|183571345|gb|EDT91873.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae SP195]
 gi|183576946|gb|EDT97474.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae
           CDC3059-06]
 gi|183578568|gb|EDT99096.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae MLV-016]
 gi|225720805|gb|ACO16659.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae 70585]
 gi|225728117|gb|ACO23968.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238736|gb|ADI69867.1| DNA topoisomerase (ATP-hydrolyzing) [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301799848|emb|CBW32422.1| topoisomerase IV subunit B [Streptococcus pneumoniae OXC141]
 gi|306408986|gb|ADM84413.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Streptococcus pneumoniae AP200]
 gi|327390204|gb|EGE88547.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae GA04375]
 gi|332073182|gb|EGI83661.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae GA17570]
          Length = 647

 Score =  598 bits (1542), Expect = e-169,   Method: Composition-based stats.
 Identities = 240/653 (36%), Positives = 366/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V    +  +         E  EF++  G++ ++    E+
Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           + +++      + E  G     VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +++ ++F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|15902800|ref|NP_358350.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae R6]
 gi|116516535|ref|YP_816236.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae D39]
 gi|15458350|gb|AAK99560.1| Topoisomerase IV subunit B [Streptococcus pneumoniae R6]
 gi|116077111|gb|ABJ54831.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae D39]
          Length = 647

 Score =  598 bits (1542), Expect = e-168,   Method: Composition-based stats.
 Identities = 240/653 (36%), Positives = 366/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTALKSKTGTKVTFMPDATIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V    +  +         E  EF++  G++ ++    E+
Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           + +++      + E  G     VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +++ ++F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|149184516|ref|ZP_01862834.1| topoisomeraseB subunit [Erythrobacter sp. SD-21]
 gi|148831836|gb|EDL50269.1| topoisomeraseB subunit [Erythrobacter sp. SD-21]
          Length = 662

 Score =  598 bits (1542), Expect = e-168,   Method: Composition-based stats.
 Identities = 345/653 (52%), Positives = 457/653 (69%), Gaps = 10/653 (1%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
              ++S +YDASSI +LEGLEPVR RPGMYIGGTD++ALHHL +EV+DN+MDE +AG+A+
Sbjct: 8   NTPTSSGDYDASSIEVLEGLEPVRRRPGMYIGGTDDRALHHLVAEVLDNSMDEAVAGHAS 67

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            IEV LD N  +T+ DNGRG+PV  HPK+P KSTLE+ILTTLH+GGKF    Y  SGGLH
Sbjct: 68  RIEVRLDENNRVTITDNGRGMPVAEHPKYPGKSTLEVILTTLHSGGKFSGKAYATSGGLH 127

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD   V VAR  T+++Q+FS+G P   +E+     N+RGT +TF PD +I
Sbjct: 128 GVGVSVVNALSDYTRVEVARDKTLYAQEFSKGAPKGGIEELGPTPNRRGTTVTFIPDTEI 187

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           FGD   F A RL K+ +SKAYL   V+  W C + +     +P +  F FPGGL  +L  
Sbjct: 188 FGD-RKFSAKRLFKLARSKAYLFAGVEIRWKCAESLTSDD-VPAEAVFKFPGGLADHLAE 245

Query: 276 KLENRSLISSEIFTGKT---EKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHE 331
           ++  R  ++++ F G     E  G  +G VEWAIAW    +   + YCNT+ T +GGTHE
Sbjct: 246 QIGGRECVTAQPFAGSQEFPETDGMEQGRVEWAIAWPLYSDGSTSWYCNTVPTPDGGTHE 305

Query: 332 SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            GLR ALT+G++ + ELT  K+A  + +DD+M+ A  +LSVFIR+P+F  QTK +L S +
Sbjct: 306 QGLRAALTKGLRAFGELTGTKKAKDLTADDIMVGAEVMLSVFIRDPQFQSQTKDRLTSPE 365

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRL 449
           A R VENA+RD FDH+L  +      LL  V+ER +ERLRR+++RE+ RKTA   +KLRL
Sbjct: 366 AARLVENAVRDHFDHFLADSMDRGKALLGQVMERMDERLRRKQEREIKRKTATNAKKLRL 425

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKL DCS      TELFIVEGDSAGGSAKQARNR  QA+LP+RGKILNVASA ++KIR 
Sbjct: 426 PGKLTDCSGEGDGETELFIVEGDSAGGSAKQARNRKTQAILPIRGKILNVASATADKIRA 485

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N +I DL  A+GC TR     E+LRY+++IIMTDADVDGAHIA+LL+TFF+QEM D++  
Sbjct: 486 NSEIADLSLAMGCGTRKDCDAENLRYDRIIIMTDADVDGAHIATLLMTFFFQEMPDIVRN 545

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
            HL+L  PPL+R+T G +S YA D+EH++++ E   K    K+E+ RFKGLGEM  +QL+
Sbjct: 546 GHLYLAQPPLYRLTAGKESRYARDDEHRKELEETVFK--GKKVEVGRFKGLGEMNPAQLR 603

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           ET MD + R+L+R+ +  +       ++ +++LMG   + RF FIQ  A   D
Sbjct: 604 ETTMDPDTRSLIRITLPAEFEQRAVVKELVDQLMGRNPEHRFNFIQNNAGEFD 656


>gi|313890482|ref|ZP_07824110.1| DNA gyrase, B subunit [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120999|gb|EFR44110.1| DNA gyrase, B subunit [Streptococcus pseudoporcinus SPIN 20026]
          Length = 650

 Score =  598 bits (1542), Expect = e-168,   Method: Composition-based stats.
 Identities = 255/648 (39%), Positives = 375/648 (57%), Gaps = 24/648 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             YDAS I++LEGLE VRMRPGMYIG T  + LHHL  E++DN++DE +AG+A+ IEV +
Sbjct: 13  QEYDASQIQVLEGLEAVRMRPGMYIGSTSSEGLHHLVWEIVDNSIDEALAGFASHIEVII 72

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGVG SV
Sbjct: 73  EEDNSITVVDDGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSSV 131

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS +L V V +   I  Q+F RG+ +  L    +     GT + F PDP+IF +   
Sbjct: 132 VNALSTQLDVRVYKNGQIHYQEFKRGVVVDDLTIIGET-ELTGTTVHFTPDPEIFTETVI 190

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F+  +L K  Q  A+L+  ++   S  ++     G+ ++++F++ GG+ +Y++   E + 
Sbjct: 191 FNFDKLAKRIQELAFLNRGLRISISDKRK-----GMQQEKDFHYEGGIGSYVEYLNEKKD 245

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
           +I         E  G     VE A+ +       + S+ N I T EGGTHE G R ALTR
Sbjct: 246 VIIETPIYTDGEMDGI---AVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALTR 302

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  YA+  +   +   ++  +D+      ++SV    P+F GQTKTKL + +  +    
Sbjct: 303 VINDYAKKNKILKENDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNR 362

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
              + F  +L++NP  A K++E  I  S+ R+  ++ RE   +K+ +    LPGKLADCS
Sbjct: 363 LFSEAFHRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCS 422

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
            N A   ELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I  L 
Sbjct: 423 SNDASQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLF 482

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    + +     RY+K++IMTDADVDGAHI +LLLT  Y+ M  ++E  ++++  P
Sbjct: 483 TAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQP 542

Query: 578 PLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           P++ +  G +   Y       E   Q  LE++   G+ K  + R+KGLGEM   QL ET 
Sbjct: 543 PIYGVKVGNEIKEYIQPGVNQEIQLQDALEKYS-SGRSKPSVQRYKGLGEMDDHQLWETT 601

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           MD   R + +V ++       +     + LMG + + R +FI+E A +
Sbjct: 602 MDPENRLMAKVTVDD----AAEADRVFDMLMGDRVEPRREFIEENAVY 645


>gi|253751556|ref|YP_003024697.1| topoisomerase IV subunit B [Streptococcus suis SC84]
 gi|253753457|ref|YP_003026598.1| topoisomerase IV subunit B [Streptococcus suis P1/7]
 gi|253755717|ref|YP_003028857.1| topoisomerase IV subunit B [Streptococcus suis BM407]
 gi|226237524|dbj|BAH47272.1| topoisomerase IV subunit B [Streptococcus suis]
 gi|251815845|emb|CAZ51453.1| topoisomerase IV subunit B [Streptococcus suis SC84]
 gi|251818181|emb|CAZ55981.1| topoisomerase IV subunit B [Streptococcus suis BM407]
 gi|251819703|emb|CAR45521.1| topoisomerase IV subunit B [Streptococcus suis P1/7]
 gi|292558203|gb|ADE31204.1| topoisomerase IV subunit B [Streptococcus suis GZ1]
          Length = 647

 Score =  598 bits (1542), Expect = e-168,   Method: Composition-based stats.
 Identities = 240/653 (36%), Positives = 372/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHH+  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGNGLHHMVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G L+V D GRG+PV  H     K T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLSVSDRGRGMPVGMH--ATGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F + G P++ LEK     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFEQGGKPVTTLEKIGTAPKSKTGTKVTFMPDDTIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L  +V    + ++         E+EE+++  G++ ++    E+
Sbjct: 186 TDFKFNTIAERLKESAFLLKQVTMTLTDER-------TGEQEEYHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++      + E  G     V+ A+ + +   +   S+ N + T +GGTHE+GL++A+
Sbjct: 239 KETLTPV-LYFEGEDAG---FQVQVAMQYNDGYSDNILSFVNNVRTKDGGTHETGLKLAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 VVDGIVSDKLTFFLLENGELASNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    S +  ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E   
Sbjct: 475 EINTMIYTIGAGVGSDFTIEDVNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     K  YA  +   + + ++F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKAEKIAYAWSDGELEDLRKDFGK----GFILQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  ++ LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVSVLMGDKVEPRRKWIEDNVKF 639


>gi|149010518|ref|ZP_01831889.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP19-BS75]
 gi|168490941|ref|ZP_02715084.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae
           CDC0288-04]
 gi|182683766|ref|YP_001835513.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae CGSP14]
 gi|225856520|ref|YP_002738031.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae P1031]
 gi|303254054|ref|ZP_07340171.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae BS455]
 gi|303260740|ref|ZP_07346699.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP-BS293]
 gi|303263098|ref|ZP_07349028.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae
           SP14-BS292]
 gi|303267485|ref|ZP_07353336.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae BS457]
 gi|303269831|ref|ZP_07355577.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae BS458]
 gi|307127597|ref|YP_003879628.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae 670-6B]
 gi|6851037|emb|CAA91550.2| DNA topoisomerase IV [Streptococcus pneumoniae]
 gi|73916356|gb|AAZ93046.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916376|gb|AAZ93056.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916382|gb|AAZ93059.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916392|gb|AAZ93064.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916412|gb|AAZ93074.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916424|gb|AAZ93080.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916436|gb|AAZ93086.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916442|gb|AAZ93089.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|147764999|gb|EDK71928.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP19-BS75]
 gi|182629100|gb|ACB90048.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae CGSP14]
 gi|183574686|gb|EDT95214.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae
           CDC0288-04]
 gi|225725021|gb|ACO20873.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae P1031]
 gi|301793990|emb|CBW36388.1| topoisomerase IV subunit B [Streptococcus pneumoniae INV104]
 gi|301801677|emb|CBW34382.1| topoisomerase IV subunit B [Streptococcus pneumoniae INV200]
 gi|302598990|gb|EFL66019.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae BS455]
 gi|302635751|gb|EFL66256.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638108|gb|EFL68584.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP-BS293]
 gi|302640628|gb|EFL71029.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae BS458]
 gi|302642991|gb|EFL73287.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae BS457]
 gi|306484659|gb|ADM91528.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae 670-6B]
 gi|332076131|gb|EGI86597.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae GA41301]
 gi|332077265|gb|EGI87727.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae GA17545]
          Length = 647

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 240/653 (36%), Positives = 366/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V    +  +         E  EF++  G++ ++    E+
Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           + +++      + E  G     VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +++ ++F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|222151258|ref|YP_002560414.1| topoisomerase IV subunit B [Macrococcus caseolyticus JCSC5402]
 gi|222120383|dbj|BAH17718.1| topoisomerase IV subunit B [Macrococcus caseolyticus JCSC5402]
          Length = 671

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 245/654 (37%), Positives = 363/654 (55%), Gaps = 33/654 (5%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A++ Y+  SI++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE + G+ N I V
Sbjct: 2   ANNQYNDESIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEILDNSIDEALNGHGNEINV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L+ +  +TV DNGRG+P   H     K T E+I T LHAGGKF    Y+ +GGLHGVG 
Sbjct: 62  VLNADDSVTVTDNGRGMPTGLHK--TGKPTPEVIFTVLHAGGKFGQGGYKTTGGLHGVGA 119

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           SVVNALS  L VT+     IF Q+F  G +P++ LE+  K +   GT +TF+PDP IF  
Sbjct: 120 SVVNALSSWLEVTIHNNGKIFKQRFQDGGVPVTTLEEIGKSKK-TGTTVTFKPDPSIFKQ 178

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L +  +  A+L   +K   S  +   E+      E FY+  GLK ++    E
Sbjct: 179 TVKFNFDTLSERLRESAFLLNNLKITISDLRNNEER-----HEVFYYEDGLKDFVNFVNE 233

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            +  +             +H   VE A  + ++    I S+ N + T +GGTHE G++ A
Sbjct: 234 GKETLHEVAKFSGK----SHDIEVEVAFQFNDQYSETILSFVNNVRTKDGGTHEVGMKTA 289

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
           +TR   +YA        +  ++  +D+      I+SV I E   +F GQTK+KL + +A+
Sbjct: 290 ITRVFNEYARKIGELKAKDKNLDGNDIREGMTAIISVKIPENLLQFEGQTKSKLGTSEAR 349

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450
             V+  L +    Y  +N + + KL++  ++ ++ R   RK RE  R     K     L 
Sbjct: 350 SAVDGVLSEQLPFYFEENGVLSQKLVKKAVKAAQARDAARKAREEARNGKKNKRKETLLS 409

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  E I  N
Sbjct: 410 GKLTPAQSKDTSRNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKAKLEDILKN 469

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    + +  +D  Y+K+IIMTDAD DGAHI  LLLTFF++ M  LI+  
Sbjct: 470 EEISTIIHTIGAGVGNDFEVKDANYDKIIIMTDADTDGAHIQVLLLTFFFKYMKPLIDAG 529

Query: 571 HLFLISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +++  PPL+++++G        YA  ++  + + ++  K       + R+KGLGEM A 
Sbjct: 530 KVYIALPPLYKVSKGKGKNEVIEYAWTDDELKGVQKKVGK----GFILQRYKGLGEMNAD 585

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL +T M+   RTL+RVEI+ +L S K     ++ LMG K + R  +I+    F
Sbjct: 586 QLWDTTMNPETRTLIRVEIDDELRSAKR----VSTLMGDKVEPRRDWIERHVEF 635


>gi|308190314|ref|YP_003923245.1| DNA topoisomerase (ATP-hydrolyzing) [Mycoplasma fermentans JER]
 gi|319777710|ref|YP_004137361.1| DNA gyrase subunit b [Mycoplasma fermentans M64]
 gi|307625056|gb|ADN69361.1| DNA topoisomerase (ATP-hydrolyzing) [Mycoplasma fermentans JER]
 gi|318038785|gb|ADV34984.1| DNA gyrase subunit B [Mycoplasma fermentans M64]
          Length = 640

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 257/653 (39%), Positives = 373/653 (57%), Gaps = 23/653 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S  YDAS+I++LEGLE VR+RPGMYIG T  + LHHL  E++DN++DE +AG+AN +E++
Sbjct: 2   SKEYDASNIKVLEGLEAVRVRPGMYIGTTGIRGLHHLIWEIVDNSVDEAMAGFANKVEIT 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +G++ V+DNGRGIP   HPK    ST+E +LT LHAGGKFD+ +Y++SGGLHGVG S
Sbjct: 62  ITKDGYIDVIDNGRGIPTAVHPK-TGLSTVETVLTVLHAGGKFDSDSYKVSGGLHGVGAS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK--KEKVRNKRGTRITFRPDPKIFGD 218
           VVN LSD+  V V R   +    F+ G  +        E      GTRI F PD  I   
Sbjct: 121 VVNGLSDDFEVWVKRDGKLHYAHFNNGGKILQHLTILNEVDPQDTGTRIKFHPDFSIMDK 180

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              +D   ++   +  AYL+  ++   + +++         +EE++F GG+  Y++    
Sbjct: 181 N-EWDKGVIVDHAKQIAYLNKGLRIIVNDERD-------KSREEYHFEGGIVDYVKELNT 232

Query: 279 NRSLISSEIFTGKTEK--KGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHESGLR 335
            + LI  ++   + E   + +    VE A+ + E     + SY N I+T EGGTHESG  
Sbjct: 233 GQKLIHPDVIYAEGEYSFQDSPAVQVEVAVQYNERITGNVVSYANNIITVEGGTHESGFY 292

Query: 336 VALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            AL R +  Y       +     +  +D+    V I+SV    P F GQTK KL + DA+
Sbjct: 293 DALVRLVNNYGTECGLIKTEEDKVTREDVREGIVAIISVKHTNPIFEGQTKGKLGNKDAR 352

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGK 452
             V     D F+ +L +NP EA  +++  I   + RL     R+   RKT      LPGK
Sbjct: 353 MAVNKVFSDSFERFLNENPAEAKTIVQKTIFAKKSRLAGLAARDAARRKTVFDTGSLPGK 412

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS   A  +EL+IVEG+SAGGSAK  RNR  QA+LPLRGK++N      +K+  N +
Sbjct: 413 LADCSSKNAEISELYIVEGNSAGGSAKMGRNRMTQAILPLRGKVINAEKNQPKKVFANAE 472

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I+ L+ ALG     ++    LRY K+IIMTDADVDGAHI +LLLTFFY+    LIE   +
Sbjct: 473 ILSLITALGTGVGEEFNINKLRYHKIIIMTDADVDGAHIRTLLLTFFYRYFRPLIEYGFI 532

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL++I Q     YA+++  K++I++    +   K+ + R+KGLGEM   QL ET 
Sbjct: 533 YIAQPPLYKIAQNKFIGYAYNDAQKEEIMQGL--NQNQKVTVQRYKGLGEMDPEQLWETT 590

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           MD   R +L+V+I            +   LMG +   R +FI++ A ++ ++ 
Sbjct: 591 MDPVNRKMLQVQIED----AARADWAFTTLMGDEVLPRREFIEQNAKYVKNID 639


>gi|218235058|ref|YP_002368410.1| DNA topoisomerase IV subunit B [Bacillus cereus B4264]
 gi|229111021|ref|ZP_04240580.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock1-15]
 gi|229146164|ref|ZP_04274539.1| DNA topoisomerase 4 subunit B [Bacillus cereus BDRD-ST24]
 gi|218163015|gb|ACK63007.1| DNA topoisomerase IV, B subunit [Bacillus cereus B4264]
 gi|228637223|gb|EEK93678.1| DNA topoisomerase 4 subunit B [Bacillus cereus BDRD-ST24]
 gi|228672384|gb|EEL27669.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock1-15]
          Length = 654

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 241/651 (37%), Positives = 360/651 (55%), Gaps = 36/651 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AG+ + I V + 
Sbjct: 7   QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V+D GRG+P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 67  KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L VT+ R   I+ Q+F  G +P + LEK  K +   GT + F+PD  IF     
Sbjct: 125 NALSEWLVVTIKRDGNIYEQRFENGGVPATTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 182

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L +  +  A+L   +K     ++   E       + F++  G++ ++    E + 
Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DIFHYETGIEAFVSYLNEEKD 235

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I   +     E+ G      E A  + +     I S+ N + T +GGTHE+G + A+TR
Sbjct: 236 SIHPVV-YFTGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA       ++  ++   D+      I+SV + E   +F GQTK KL + +A+ ++
Sbjct: 292 VFNEYARKVALLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSI 351

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453
           +  + +   ++L +NP  AT L+   I+ ++ R   RK RE  R    +K     L GKL
Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARSGKKKKKSEGTLSGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I
Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A+G    +++  ED+ Y+KV+IMTDAD DGAHI  LLLTFFY+ M  LIE   +F
Sbjct: 472 NTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G        YA  +E    + ++  K       + R+KGLGEM A QL 
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGK----GYMLQRYKGLGEMNADQLW 587

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV+I+         +  +  LMG K + R K+I+    F
Sbjct: 588 ETTMNPETRTLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIERNVQF 634


>gi|322392130|ref|ZP_08065592.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus peroris
           ATCC 700780]
 gi|321145030|gb|EFX40429.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus peroris
           ATCC 700780]
          Length = 647

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 242/653 (37%), Positives = 363/653 (55%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVEDHGRGMPTGMH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F   G P++ LEK     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLEKVGTAPKSKTGTKVTFMPDATIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V       +         E  EF++  G++ ++    E+
Sbjct: 186 TDFKYHTISERLNESAFLLKNVTLSLMDKR-------TDETIEFHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++      + E  G     VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KETLTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 475 EINTMIYTIGAGVGADFSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +K+  +F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEKLRSQFGK----GATLQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|73916378|gb|AAZ93057.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
          Length = 647

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 239/653 (36%), Positives = 365/653 (55%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKVGTAPKSKTGTKVTFMPDATIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L        +  +         E  EF++  G++ ++    E+
Sbjct: 186 TDFKYNTISERLNESAFLLKNATLSLTDKRS-------DEAIEFHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           + +++      + E  G     VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +++ ++F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|328883698|emb|CCA56937.1| DNA gyrase subunit B [Streptomyces venezuelae ATCC 10712]
          Length = 676

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 252/671 (37%), Positives = 375/671 (55%), Gaps = 27/671 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
             N + ++ Y AS+I++LEGL+ VR RPGMYIG T E+ LHH+  EV+DN++DE +AG+A
Sbjct: 12  SGNPNENNQYTASNIQVLEGLDAVRKRPGMYIGSTGERGLHHMVQEVVDNSVDEALAGHA 71

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I+V++  +G + VVDNGRGIPV        K  +E++LT LHAGGKF    Y +SGGL
Sbjct: 72  DTIDVTILADGAVRVVDNGRGIPVGIVA-SEGKPAVEVVLTVLHAGGKFGGGGYAVSGGL 130

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS ++ V +      ++Q +  G P +PL + EK  ++ GT +TF  DP 
Sbjct: 131 HGVGVSVVNALSTKVSVEIKTDGHRWTQDYKMGAPTAPLAQHEKT-DETGTSVTFWADPD 189

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE-------------KYGIPEKE 261
           IF     +    L +  Q  A+L+  +    + ++E A+                     
Sbjct: 190 IFET-TEYSFETLSRRFQEMAFLNKGLTITLTDERESAKATVGADDPDAEAAAEPAARTV 248

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCN 320
           ++++ GG+  +++     +  +          +      ++E A+ W     E + S+ N
Sbjct: 249 KYHYEGGIVDFVKYLNSRKGELVHPTVIDLEAEDKDKALSLEVAMQWNSGYSEGVYSFAN 308

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPE 378
            I T EGGTHE G R ALT  I KYA   +   ++  ++  DD+      I+SV + EP+
Sbjct: 309 IIHTHEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISVKLSEPQ 368

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
           F GQTKTKL + + +  V+ A+ +  + +L +NP+EA  ++   I+ +  R+  RK R++
Sbjct: 369 FEGQTKTKLGNTEVKTFVQRAVYEHLNDWLDRNPVEAADIIRKSIQAATARVAARKARDL 428

Query: 439 NRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
            R+   +    LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKIL
Sbjct: 429 TRRKGLLESASLPGKLSDCQSNDPSKCEIFIVEGDSAGGSAKSGRNPMYQAILPIRGKIL 488

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557
           NV  A  +KI  N ++  L+ A G      +  E LRY K+I+M DADVDG HI +LLLT
Sbjct: 489 NVEKARIDKILQNTEVQALISAFGTGVHEDFDIEKLRYHKIILMADADVDGQHINTLLLT 548

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGK--GKIEI 614
           F ++ M  L+E  H+FL  PPL++I  G     YA+ +  +  ++E  K+ GK   +  I
Sbjct: 549 FLFRFMRPLVEAGHVFLSRPPLYKIKWGRDDFEYAYSDRERDALVELGKQSGKRIKEDSI 608

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
            RFKGLGEM A +L+ T MD   R L +V ++          D  + LMG   + R  FI
Sbjct: 609 QRFKGLGEMNAEELRVTTMDVEHRVLGQVTLDD----AAQADDLFSVLMGEDVEARRSFI 664

Query: 675 QERASFIDDVG 685
           Q  A  +  + 
Sbjct: 665 QRNAKDVRFLD 675


>gi|73916360|gb|AAZ93048.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916432|gb|AAZ93084.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
          Length = 647

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 240/653 (36%), Positives = 366/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKVGTAPKSKTGTKVTFMPDATIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V    +  +         E  EF++  G++ ++    E+
Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKRS-------DEAIEFHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           + +++      + E  G     VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +++ ++F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|229174259|ref|ZP_04301792.1| DNA topoisomerase 4 subunit B [Bacillus cereus MM3]
 gi|228609116|gb|EEK66405.1| DNA topoisomerase 4 subunit B [Bacillus cereus MM3]
          Length = 654

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 241/651 (37%), Positives = 360/651 (55%), Gaps = 36/651 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AG+ + I V + 
Sbjct: 7   QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V+D GRG+P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 67  KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L VT+ R   I+ Q+F  G IP + LEK  K +   GT I F+PD  IF     
Sbjct: 125 NALSEWLVVTIKRDGNIYEQRFENGGIPATTLEKIGKTKE-SGTTIHFKPDTTIFSTTN- 182

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L +  +  A+L   +K     ++   E       + F++  G++ ++    E + 
Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DVFHYETGIEAFVSYLNEEKD 235

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I   +     E+ G      E A  + +     I S+ N + T +GGTHE+G + A+TR
Sbjct: 236 SIHPVV-YFTGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA       ++  ++   D+      I+SV + E   +F GQTK KL + +A+ ++
Sbjct: 292 VFNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSI 351

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453
           +  + +   ++L +NP  AT L+   ++ ++ R   RK RE  R    +K     L GKL
Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAVKAAQAREAARKAREEARTGKKKKKSEGTLSGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I
Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A+G    +++  ED+ Y+K++IMTDAD DGAHI  LLLTFFY+ M  LIE   +F
Sbjct: 472 NTIIYAIGGGVGNEFAVEDINYDKIVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G        YA  +E    + ++  K       + R+KGLGEM A QL 
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGK----GYMLQRYKGLGEMNADQLW 587

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV+I+         +  +  LMG K + R K+I+    F
Sbjct: 588 ETTMNPETRTLIRVKIDDASR----AERRVTTLMGDKVEPRRKWIERNVQF 634


>gi|168484709|ref|ZP_02709661.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae
           CDC1873-00]
 gi|172042106|gb|EDT50152.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae
           CDC1873-00]
          Length = 647

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 241/653 (36%), Positives = 366/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKVGTAPKSKTGTKVTFMPDATIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V    +  +         E  EF++  G++ ++    E+
Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           + +++      + E  G     VE AI + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVAIQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +++ ++F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|253731987|ref|ZP_04866152.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724397|gb|EES93126.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|320143913|gb|EFW35685.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus MRSA177]
          Length = 694

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 241/654 (36%), Positives = 361/654 (55%), Gaps = 31/654 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  +NY   SI++LEGLE VR RPGMYIG TD++ LHHL  E++DN++DEV+ GY N I+
Sbjct: 33  NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 92

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+++ +G +++ DNGRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG
Sbjct: 93  VTINKDGSISIEDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 150

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS+ L V + R   I+ Q F  G   S    K+    K GT++TF+PD  IF  
Sbjct: 151 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 210

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L +  Q  A+L   +K   +  +   E      +E +++  G+K ++    E
Sbjct: 211 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKE-----RQEHYHYEEGIKEFVSYVNE 265

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            + ++  ++ T   E  G     V+ A  + ++    I S+ N + T +GGTHE G + A
Sbjct: 266 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 321

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
           +TR    YA        +  ++  +D+      ++SV I E   +F GQTK+KL + +A+
Sbjct: 322 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR 381

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450
             V++ + D    YL +    +  L++  I+  + R   RK RE  R     K     L 
Sbjct: 382 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 441

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  E I  N
Sbjct: 442 GKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 501

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    + ++ ED  Y +VIIMTDAD DGAHI  LLLTFF++ M  L++  
Sbjct: 502 EEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 561

Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +F+  PPL+++ +G     +  YA  +E   K+ +E  K       + R+KGLGEM   
Sbjct: 562 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNPE 617

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET M+   RTL+RV++  ++ S K     +  LMG K   R ++I++   F
Sbjct: 618 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVQPRREWIEKHVEF 667


>gi|257885591|ref|ZP_05665244.1| DNA gyrase B subunit [Enterococcus faecium 1,231,501]
 gi|257821447|gb|EEV48577.1| DNA gyrase B subunit [Enterococcus faecium 1,231,501]
          Length = 648

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 248/653 (37%), Positives = 376/653 (57%), Gaps = 24/653 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  YDAS I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DEV+AG+A  I V 
Sbjct: 11  AKEYDASQIQVLEGLEAVRKRPGMYIGSTSSEGLHHLVWEIVDNSIDEVLAGFATKIHVI 70

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TV+D+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGVG S
Sbjct: 71  IEKDNSITVIDDGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 129

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L V V ++  ++ Q++ RG  +  L+  E+  ++ GT + F PDP+IF +  
Sbjct: 130 VVNALSTQLDVKVYKEGNVYYQEYRRGAVVDDLKIIEQT-DRHGTTVHFTPDPEIFTETT 188

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD ++L    +  A+L+  ++      +E       P   E+++ GG+K+Y++    N+
Sbjct: 189 EFDFSKLATRIRELAFLNRGMRISIEDKRE-----EEPVINEYHYEGGIKSYVEYLNANK 243

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           ++I  E    + E++      VE ++ + +     I S+ N I T EGGTHESG + ALT
Sbjct: 244 TVIFPEPVYLEGEQQDI---AVEVSMQYTDGYHSNIMSFANNIHTYEGGTHESGFKTALT 300

Query: 340 RGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA   +  +    ++  +D+      ++S+   +P+F GQTKTKL + + +   +
Sbjct: 301 RVINDYARKQKLMKENDDNLTGEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRTVTD 360

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
               + F  +L++NP    +++E  ++        +R +    RK A+    LPGKLADC
Sbjct: 361 RLFSEHFMKFLLENPSVGRQIVEKGLLASRARLAAKRAREVTRRKGALEISNLPGKLADC 420

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S N     ELFIVEGDSAGGSAKQ RNR  QA+LP+RGKILNV  A  +KI  N++I  L
Sbjct: 421 SSNDPEKCELFIVEGDSAGGSAKQGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 480

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G      +     RY K++IMTDADVDGAHI +LLLT FY+ M  ++E  ++++  
Sbjct: 481 FTAMGTGFGEDFDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYVYIAQ 540

Query: 577 PPLFRITQGTKSVYAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           PPL+ + QG    Y       EE  ++++         K  + R+KGLGEM   QL ET 
Sbjct: 541 PPLYGVKQGKNITYVQPGKNAEEELKQVVASLPAS--PKPSVQRYKGLGEMDDHQLWETT 598

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           MD + R + RV ++  +            LMG + + R  FI+E A ++ ++ 
Sbjct: 599 MDPSNRMMARVSVDDAI----AADQIFEMLMGDRVEPRRAFIEENAHYVKNLD 647


>gi|326442166|ref|ZP_08216900.1| DNA gyrase subunit B [Streptomyces clavuligerus ATCC 27064]
          Length = 687

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 254/684 (37%), Positives = 378/684 (55%), Gaps = 25/684 (3%)

Query: 20  SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79
           ++    +   P +P  ++   + +YDAS+I +LEGL+ VR RPGMYIG T E+ LHHL  
Sbjct: 10  ADSGNPNENNPSTPVGSSGEVTASYDASAITVLEGLDAVRKRPGMYIGSTGERGLHHLVY 69

Query: 80  EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139
           EV+DN++DE +AG+A+ I+V++  +G + VVDNGRGIPV   P   NK  +E++LT LHA
Sbjct: 70  EVVDNSVDEALAGHADTIQVTILADGGVRVVDNGRGIPVGIVP-SENKPAVEVVLTVLHA 128

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKF    Y +SGGLHGVG+SVVNALS ++ V V      ++Q +  G+P +PL + E+ 
Sbjct: 129 GGKFGGGGYAVSGGLHGVGVSVVNALSTKVAVDVKTDGYRWTQDYKLGVPTAPLARNEET 188

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE------ 253
               GT +TF  D  IF     +    L +  Q  A+L+  +    + ++E A+      
Sbjct: 189 AE-TGTSVTFWADGDIFET-TEYSFETLSRRFQEMAFLNKGLTLTLTDERESAKATSGAD 246

Query: 254 -----KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
                +        +Y+ GG+  +++     +  +          +      +VE A+ W
Sbjct: 247 TAEEAEQEQVRTVTYYYEGGIVDFVKYLNSRKGELIHPTVIDIEAEDKERMLSVEIAMQW 306

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMIS 365
             +    + S+ NTI T EGGTHE G R ALT  + +YA   +   ++  ++  +D+   
Sbjct: 307 NSQYTEGVYSFANTIHTHEGGTHEEGFRAALTGLVNRYARDKKLLREKDDNLSGEDIREG 366

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              I+SV + EP+F GQTKTKL + +A+  V+  + +    +  +NP EA  ++   I+ 
Sbjct: 367 LTAIISVKLGEPQFEGQTKTKLGNTEAKTFVQKVVHEHLTDWFDRNPNEAADIVRKAIQA 426

Query: 426 SEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
              R+  RK R++ R+   +    LPGKL+DC  N     E+FIVEGDSAGGSAK  RN 
Sbjct: 427 QTARVAARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNP 486

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA+LP+RGKILNV  A  +KI  N ++  L+ A G      +  E LRY K+I+M DA
Sbjct: 487 MYQAILPIRGKILNVEKARIDKILQNTEVQALISAFGTGIHEDFDIEKLRYHKIILMADA 546

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEE 603
           DVDG HI +LLLTF ++ M  L+E  H+FL  PPL++I  G     YA+ +  +  ++E 
Sbjct: 547 DVDGQHINTLLLTFLFRFMRPLVEAGHVFLSRPPLYKIKWGRDDFEYAYSDRERDALVEL 606

Query: 604 FKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
            K+ GK   +  I RFKGLGEM A +L+ T MD   R L +V ++          D  + 
Sbjct: 607 GKQQGKRIREDSIQRFKGLGEMNAEELRVTTMDVEHRVLGQVTLDD----AAQADDLFSV 662

Query: 662 LMGTKADERFKFIQERASFIDDVG 685
           LMG   + R  FIQ  A  +  + 
Sbjct: 663 LMGEDVEARRSFIQRNAKDVRFLD 686


>gi|254393574|ref|ZP_05008707.1| DNA gyrase subunit B [Streptomyces clavuligerus ATCC 27064]
 gi|197707194|gb|EDY53006.1| DNA gyrase subunit B [Streptomyces clavuligerus ATCC 27064]
          Length = 686

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 254/684 (37%), Positives = 378/684 (55%), Gaps = 25/684 (3%)

Query: 20  SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79
           ++    +   P +P  ++   + +YDAS+I +LEGL+ VR RPGMYIG T E+ LHHL  
Sbjct: 9   ADSGNPNENNPSTPVGSSGEVTASYDASAITVLEGLDAVRKRPGMYIGSTGERGLHHLVY 68

Query: 80  EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139
           EV+DN++DE +AG+A+ I+V++  +G + VVDNGRGIPV   P   NK  +E++LT LHA
Sbjct: 69  EVVDNSVDEALAGHADTIQVTILADGGVRVVDNGRGIPVGIVP-SENKPAVEVVLTVLHA 127

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKF    Y +SGGLHGVG+SVVNALS ++ V V      ++Q +  G+P +PL + E+ 
Sbjct: 128 GGKFGGGGYAVSGGLHGVGVSVVNALSTKVAVDVKTDGYRWTQDYKLGVPTAPLARNEET 187

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE------ 253
               GT +TF  D  IF     +    L +  Q  A+L+  +    + ++E A+      
Sbjct: 188 AE-TGTSVTFWADGDIFET-TEYSFETLSRRFQEMAFLNKGLTLTLTDERESAKATSGAD 245

Query: 254 -----KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
                +        +Y+ GG+  +++     +  +          +      +VE A+ W
Sbjct: 246 TAEEAEQEQVRTVTYYYEGGIVDFVKYLNSRKGELIHPTVIDIEAEDKERMLSVEIAMQW 305

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMIS 365
             +    + S+ NTI T EGGTHE G R ALT  + +YA   +   ++  ++  +D+   
Sbjct: 306 NSQYTEGVYSFANTIHTHEGGTHEEGFRAALTGLVNRYARDKKLLREKDDNLSGEDIREG 365

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              I+SV + EP+F GQTKTKL + +A+  V+  + +    +  +NP EA  ++   I+ 
Sbjct: 366 LTAIISVKLGEPQFEGQTKTKLGNTEAKTFVQKVVHEHLTDWFDRNPNEAADIVRKAIQA 425

Query: 426 SEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
              R+  RK R++ R+   +    LPGKL+DC  N     E+FIVEGDSAGGSAK  RN 
Sbjct: 426 QTARVAARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNP 485

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA+LP+RGKILNV  A  +KI  N ++  L+ A G      +  E LRY K+I+M DA
Sbjct: 486 MYQAILPIRGKILNVEKARIDKILQNTEVQALISAFGTGIHEDFDIEKLRYHKIILMADA 545

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEE 603
           DVDG HI +LLLTF ++ M  L+E  H+FL  PPL++I  G     YA+ +  +  ++E 
Sbjct: 546 DVDGQHINTLLLTFLFRFMRPLVEAGHVFLSRPPLYKIKWGRDDFEYAYSDRERDALVEL 605

Query: 604 FKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
            K+ GK   +  I RFKGLGEM A +L+ T MD   R L +V ++          D  + 
Sbjct: 606 GKQQGKRIREDSIQRFKGLGEMNAEELRVTTMDVEHRVLGQVTLDD----AAQADDLFSV 661

Query: 662 LMGTKADERFKFIQERASFIDDVG 685
           LMG   + R  FIQ  A  +  + 
Sbjct: 662 LMGEDVEARRSFIQRNAKDVRFLD 685


>gi|294813745|ref|ZP_06772388.1| DNA gyrase subunit B, novobiocin-sensitive [Streptomyces
           clavuligerus ATCC 27064]
 gi|294326344|gb|EFG07987.1| DNA gyrase subunit B, novobiocin-sensitive [Streptomyces
           clavuligerus ATCC 27064]
          Length = 693

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 254/684 (37%), Positives = 378/684 (55%), Gaps = 25/684 (3%)

Query: 20  SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79
           ++    +   P +P  ++   + +YDAS+I +LEGL+ VR RPGMYIG T E+ LHHL  
Sbjct: 16  ADSGNPNENNPSTPVGSSGEVTASYDASAITVLEGLDAVRKRPGMYIGSTGERGLHHLVY 75

Query: 80  EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139
           EV+DN++DE +AG+A+ I+V++  +G + VVDNGRGIPV   P   NK  +E++LT LHA
Sbjct: 76  EVVDNSVDEALAGHADTIQVTILADGGVRVVDNGRGIPVGIVP-SENKPAVEVVLTVLHA 134

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKF    Y +SGGLHGVG+SVVNALS ++ V V      ++Q +  G+P +PL + E+ 
Sbjct: 135 GGKFGGGGYAVSGGLHGVGVSVVNALSTKVAVDVKTDGYRWTQDYKLGVPTAPLARNEET 194

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE------ 253
               GT +TF  D  IF     +    L +  Q  A+L+  +    + ++E A+      
Sbjct: 195 AE-TGTSVTFWADGDIFET-TEYSFETLSRRFQEMAFLNKGLTLTLTDERESAKATSGAD 252

Query: 254 -----KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
                +        +Y+ GG+  +++     +  +          +      +VE A+ W
Sbjct: 253 TAEEAEQEQVRTVTYYYEGGIVDFVKYLNSRKGELIHPTVIDIEAEDKERMLSVEIAMQW 312

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMIS 365
             +    + S+ NTI T EGGTHE G R ALT  + +YA   +   ++  ++  +D+   
Sbjct: 313 NSQYTEGVYSFANTIHTHEGGTHEEGFRAALTGLVNRYARDKKLLREKDDNLSGEDIREG 372

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              I+SV + EP+F GQTKTKL + +A+  V+  + +    +  +NP EA  ++   I+ 
Sbjct: 373 LTAIISVKLGEPQFEGQTKTKLGNTEAKTFVQKVVHEHLTDWFDRNPNEAADIVRKAIQA 432

Query: 426 SEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
              R+  RK R++ R+   +    LPGKL+DC  N     E+FIVEGDSAGGSAK  RN 
Sbjct: 433 QTARVAARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNP 492

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA+LP+RGKILNV  A  +KI  N ++  L+ A G      +  E LRY K+I+M DA
Sbjct: 493 MYQAILPIRGKILNVEKARIDKILQNTEVQALISAFGTGIHEDFDIEKLRYHKIILMADA 552

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEE 603
           DVDG HI +LLLTF ++ M  L+E  H+FL  PPL++I  G     YA+ +  +  ++E 
Sbjct: 553 DVDGQHINTLLLTFLFRFMRPLVEAGHVFLSRPPLYKIKWGRDDFEYAYSDRERDALVEL 612

Query: 604 FKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
            K+ GK   +  I RFKGLGEM A +L+ T MD   R L +V ++          D  + 
Sbjct: 613 GKQQGKRIREDSIQRFKGLGEMNAEELRVTTMDVEHRVLGQVTLDD----AAQADDLFSV 668

Query: 662 LMGTKADERFKFIQERASFIDDVG 685
           LMG   + R  FIQ  A  +  + 
Sbjct: 669 LMGEDVEARRSFIQRNAKDVRFLD 692


>gi|15900737|ref|NP_345341.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae TIGR4]
 gi|111657635|ref|ZP_01408368.1| hypothetical protein SpneT_02001165 [Streptococcus pneumoniae
           TIGR4]
 gi|19864342|sp|Q59961|PARE_STRPN RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|14972325|gb|AAK74981.1| topoisomerase IV, subunit B [Streptococcus pneumoniae TIGR4]
 gi|73916354|gb|AAZ93045.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916386|gb|AAZ93061.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916462|gb|AAZ93099.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
          Length = 647

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 240/653 (36%), Positives = 366/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V    +  +         E  EF++  G++ ++    E+
Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TNEAIEFHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           + +++      + E  G     VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +++ ++F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|294012212|ref|YP_003545672.1| DNA gyrase subunit B [Sphingobium japonicum UT26S]
 gi|292675542|dbj|BAI97060.1| DNA gyrase subunit B [Sphingobium japonicum UT26S]
          Length = 658

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 344/657 (52%), Positives = 459/657 (69%), Gaps = 10/657 (1%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            AN S +  YDAS+I +LEGLEPVR RPGMYIGGTDE+ALHHL SEV+DN+MDE +AG+A
Sbjct: 7   AANSSTAPQYDASAIEVLEGLEPVRRRPGMYIGGTDERALHHLASEVLDNSMDEAVAGHA 66

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             IEV L+    LT+ DNGRGIPV+ HPKFP KS LE+ILTTLH+GGKF +  Y  SGGL
Sbjct: 67  TRIEVLLEPGNRLTITDNGRGIPVDPHPKFPGKSALEVILTTLHSGGKFSDKAYATSGGL 126

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVGISVVNALS    + VAR   +F Q F++G+P S L+K     N+RGT ++F PD +
Sbjct: 127 HGVGISVVNALSISTVIEVARNKELFRQSFTQGLPSSDLQKVGAAPNRRGTSVSFIPDTE 186

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IFG+   F  +RL ++ +SKAYL   V+  W C  E+      P +  F FPGGL  +L+
Sbjct: 187 IFGE-QKFKPSRLYRLARSKAYLFAGVEIRWKCAPELI-ADETPAEAVFQFPGGLADHLK 244

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESG 333
            ++ +R   +S  F+G  +      G VEWA+AW    +   + YCNTI T +GGTHE+G
Sbjct: 245 EQVGDRECATSAFFSGSQDFPD-AAGRVEWAVAWPLWSDGSYSWYCNTIPTPDGGTHETG 303

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
           LR AL +GI+ + +L   K+A  I +DD++ S+  +LSVFIR+P+F  QTK +L S +A 
Sbjct: 304 LRAALVKGIRAFGDLVGQKKAKDITADDIVTSSEIMLSVFIRDPQFQSQTKDRLTSPEAA 363

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLPG 451
           R VENA+RD FDHYL  +      LL +V++R +ERL+R++++EV RKTA   RKLRLPG
Sbjct: 364 RLVENAVRDHFDHYLSDHMERGKALLAYVLDRMDERLKRKQEKEVKRKTATNSRKLRLPG 423

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL DCS +   G E+F+VEGDSAGGSAKQAR+R  QA+LPLRGKILNVASA + KI  NQ
Sbjct: 424 KLTDCSNDDPEGAEIFLVEGDSAGGSAKQARDRKTQAILPLRGKILNVASANTAKILANQ 483

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I D++ ALGC TR     ++LRYE+++IMTDADVDGAHIA+LL+TFF+QEM +L+ + H
Sbjct: 484 EIADMILALGCGTRKDCNPDNLRYERIVIMTDADVDGAHIATLLMTFFFQEMPELVRRGH 543

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           L+L  PPL+R+  G KS+YA D+ H+++IL   K+    K+E+SRFKGLGEM   QL+ET
Sbjct: 544 LYLAQPPLYRLVAGGKSLYARDDAHREEILA--KEFKGKKVEVSRFKGLGEMNPGQLRET 601

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD--VGT 686
            MD   R+L+RV +  D+   +  ++ + +LMGT    RF FIQE A+ +D+  +  
Sbjct: 602 TMDPKTRSLIRVTLPDDIEDRQQVRELVERLMGTNPAHRFAFIQENAANVDEESIDA 658


>gi|117927216|ref|YP_871767.1| DNA gyrase subunit B [Acidothermus cellulolyticus 11B]
 gi|117647679|gb|ABK51781.1| DNA gyrase subunit B [Acidothermus cellulolyticus 11B]
          Length = 666

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 253/664 (38%), Positives = 365/664 (54%), Gaps = 27/664 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +YDASSI +LEGLE VR RPGMYIG T E+ LHHL  EV+DNA+DE +AG  + I+V+
Sbjct: 10  ASSYDASSITVLEGLEAVRKRPGMYIGSTGERGLHHLVYEVVDNAVDEALAGACDRIDVT 69

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +G + VVDNGRGIPV+ HP    +  +E++LT LHAG KF    Y++SGGLHGVG+S
Sbjct: 70  LLADGGVRVVDNGRGIPVDEHP-GEKRPAVEVVLTVLHAGAKFGGRGYKVSGGLHGVGVS 128

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ L V V R   ++ Q + RG P  PL++  +  ++ GT +TF PDP+IF    
Sbjct: 129 VVNALSERLDVEVHRDGYVWRQSYRRGTPTGPLQR-GEPTDRTGTTVTFWPDPEIFET-T 186

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDK-------EIAEKY---GIPEKEEFYFPGGLK 270
            F    L    +  A+L+  +      ++       + AEK      P +  + + GGL 
Sbjct: 187 RFSFETLANRLREIAFLNKGLTITLRDERPAEHLDSDDAEKPAGGDDPTEVYYRYDGGLV 246

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            Y+      +      I + +         ++E A+ W       + ++ NTI T EGGT
Sbjct: 247 DYVAHLNATKEPAHRSIISFEAH-DPVSDMSLEAALQWNTGYTESVHTFANTINTHEGGT 305

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           HE G R ALT  + K+ E      K+   +  +D+      ILS+ ++EP+F GQTKTKL
Sbjct: 306 HEEGFRAALTYLVNKFGEEWNLIKKKEDRLTGEDIREGLTAILSIKLKEPQFEGQTKTKL 365

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE--VNRKTAIR 445
            + + +  V+    D    +  +NP E   ++   I+ +  R+  RK R+   NRK  + 
Sbjct: 366 GNTEVKSFVQTVCNDRLGEWFEKNPAEGKDIVRKAIQAATARIAARKARDLARNRKGLLG 425

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKL DC        ELFIVEGDSAGGSA+Q R+   QAVLP+RGKILNV  A  +
Sbjct: 426 GGGLPGKLVDCQSTNPEECELFIVEGDSAGGSARQGRDPRTQAVLPIRGKILNVERARID 485

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           K+  N ++  ++ ALG      +    LRY KV++M DADVDG HI +LLLT  ++ M  
Sbjct: 486 KVLQNNEVQAVISALGTGVHDDFDLARLRYHKVVLMADADVDGQHIRTLLLTLLFRFMKP 545

Query: 566 LIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLG 621
           L+E  H++L  PPL+RI        +A+ +  +  ++E     GK   +   I R+KGLG
Sbjct: 546 LVEAGHVYLAQPPLYRIKWSNAPHEFAYSDRERDGLVEAGLAAGKKLPKEQGIQRYKGLG 605

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           EM   +L  T MD  +R LL+V ++          +  + LMG   ++R  FIQ  A  +
Sbjct: 606 EMNPEELWTTTMDPAQRVLLQVSLDD----AARADEIFSILMGDDVEQRRAFIQRNAKDV 661

Query: 682 DDVG 685
             + 
Sbjct: 662 RFLD 665


>gi|69246710|ref|ZP_00604078.1| DNA gyrase, B subunit [Enterococcus faecium DO]
 gi|227550644|ref|ZP_03980693.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium TX1330]
 gi|257878650|ref|ZP_05658303.1| DNA gyrase B subunit [Enterococcus faecium 1,230,933]
 gi|257881316|ref|ZP_05660969.1| DNA gyrase B subunit [Enterococcus faecium 1,231,502]
 gi|257888091|ref|ZP_05667744.1| DNA gyrase B subunit [Enterococcus faecium 1,141,733]
 gi|257890533|ref|ZP_05670186.1| DNA gyrase B subunit [Enterococcus faecium 1,231,410]
 gi|257893108|ref|ZP_05672761.1| DNA gyrase B subunit [Enterococcus faecium 1,231,408]
 gi|257896291|ref|ZP_05675944.1| DNA gyrase B subunit [Enterococcus faecium Com12]
 gi|257899275|ref|ZP_05678928.1| DNA gyrase B subunit [Enterococcus faecium Com15]
 gi|258615266|ref|ZP_05713036.1| DNA gyrase subunit B [Enterococcus faecium DO]
 gi|260558231|ref|ZP_05830427.1| DNA gyrase B subunit [Enterococcus faecium C68]
 gi|261206921|ref|ZP_05921610.1| DNA gyrase B subunit [Enterococcus faecium TC 6]
 gi|289566502|ref|ZP_06446926.1| DNA gyrase, B subunit [Enterococcus faecium D344SRF]
 gi|293379372|ref|ZP_06625516.1| DNA gyrase, B subunit [Enterococcus faecium PC4.1]
 gi|293553551|ref|ZP_06674178.1| DNA gyrase, B subunit [Enterococcus faecium E1039]
 gi|293563255|ref|ZP_06677707.1| DNA gyrase, B subunit [Enterococcus faecium E1162]
 gi|293569155|ref|ZP_06680461.1| DNA gyrase, B subunit [Enterococcus faecium E1071]
 gi|293572722|ref|ZP_06683686.1| DNA gyrase, B subunit [Enterococcus faecium E980]
 gi|294616655|ref|ZP_06696426.1| DNA gyrase, B subunit [Enterococcus faecium E1636]
 gi|294619749|ref|ZP_06699154.1| DNA gyrase, B subunit [Enterococcus faecium E1679]
 gi|294623763|ref|ZP_06702591.1| DNA gyrase, B subunit [Enterococcus faecium U0317]
 gi|314940127|ref|ZP_07847307.1| DNA gyrase, B subunit [Enterococcus faecium TX0133a04]
 gi|314943042|ref|ZP_07849846.1| DNA gyrase, B subunit [Enterococcus faecium TX0133C]
 gi|314948160|ref|ZP_07851556.1| DNA gyrase, B subunit [Enterococcus faecium TX0082]
 gi|314953426|ref|ZP_07856344.1| DNA gyrase, B subunit [Enterococcus faecium TX0133A]
 gi|314993835|ref|ZP_07859171.1| DNA gyrase, B subunit [Enterococcus faecium TX0133B]
 gi|314998140|ref|ZP_07863022.1| DNA gyrase, B subunit [Enterococcus faecium TX0133a01]
 gi|68195124|gb|EAN09583.1| DNA gyrase, B subunit [Enterococcus faecium DO]
 gi|227180223|gb|EEI61195.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium TX1330]
 gi|257812878|gb|EEV41636.1| DNA gyrase B subunit [Enterococcus faecium 1,230,933]
 gi|257816974|gb|EEV44302.1| DNA gyrase B subunit [Enterococcus faecium 1,231,502]
 gi|257824145|gb|EEV51077.1| DNA gyrase B subunit [Enterococcus faecium 1,141,733]
 gi|257826893|gb|EEV53519.1| DNA gyrase B subunit [Enterococcus faecium 1,231,410]
 gi|257829487|gb|EEV56094.1| DNA gyrase B subunit [Enterococcus faecium 1,231,408]
 gi|257832856|gb|EEV59277.1| DNA gyrase B subunit [Enterococcus faecium Com12]
 gi|257837187|gb|EEV62261.1| DNA gyrase B subunit [Enterococcus faecium Com15]
 gi|260075405|gb|EEW63711.1| DNA gyrase B subunit [Enterococcus faecium C68]
 gi|260078549|gb|EEW66251.1| DNA gyrase B subunit [Enterococcus faecium TC 6]
 gi|289161711|gb|EFD09587.1| DNA gyrase, B subunit [Enterococcus faecium D344SRF]
 gi|291588124|gb|EFF19966.1| DNA gyrase, B subunit [Enterococcus faecium E1071]
 gi|291590475|gb|EFF22213.1| DNA gyrase, B subunit [Enterococcus faecium E1636]
 gi|291594019|gb|EFF25488.1| DNA gyrase, B subunit [Enterococcus faecium E1679]
 gi|291596717|gb|EFF27940.1| DNA gyrase, B subunit [Enterococcus faecium U0317]
 gi|291602306|gb|EFF32531.1| DNA gyrase, B subunit [Enterococcus faecium E1039]
 gi|291604794|gb|EFF34276.1| DNA gyrase, B subunit [Enterococcus faecium E1162]
 gi|291607214|gb|EFF36572.1| DNA gyrase, B subunit [Enterococcus faecium E980]
 gi|292641895|gb|EFF60061.1| DNA gyrase, B subunit [Enterococcus faecium PC4.1]
 gi|313587852|gb|EFR66697.1| DNA gyrase, B subunit [Enterococcus faecium TX0133a01]
 gi|313591726|gb|EFR70571.1| DNA gyrase, B subunit [Enterococcus faecium TX0133B]
 gi|313594529|gb|EFR73374.1| DNA gyrase, B subunit [Enterococcus faecium TX0133A]
 gi|313598242|gb|EFR77087.1| DNA gyrase, B subunit [Enterococcus faecium TX0133C]
 gi|313640632|gb|EFS05212.1| DNA gyrase, B subunit [Enterococcus faecium TX0133a04]
 gi|313645414|gb|EFS09994.1| DNA gyrase, B subunit [Enterococcus faecium TX0082]
          Length = 648

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 248/653 (37%), Positives = 376/653 (57%), Gaps = 24/653 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  YDAS I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DEV+AG+A  I V 
Sbjct: 11  AKEYDASQIQVLEGLEAVRKRPGMYIGSTSSEGLHHLVWEIVDNSIDEVLAGFATKIHVI 70

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TV+D+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGVG S
Sbjct: 71  IEKDNSITVIDDGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 129

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L V V ++  ++ Q++ RG  +  L+  E+  ++ GT + F PDP+IF +  
Sbjct: 130 VVNALSTQLDVKVYKEGNVYYQEYRRGAVVDDLKIIEQT-DRHGTTVHFTPDPEIFTETT 188

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD ++L    +  A+L+  ++      +E       P   E+++ GG+K+Y++    N+
Sbjct: 189 EFDFSKLATRIRELAFLNRGMRISIEDKRE-----EEPVINEYHYDGGIKSYVEYLNANK 243

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           ++I  E    + E++      VE ++ + +     I S+ N I T EGGTHESG + ALT
Sbjct: 244 TVIFPEPVYLEGEQQDI---AVEVSMQYTDGYHSNIMSFANNIHTYEGGTHESGFKTALT 300

Query: 340 RGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA   +  +    ++  +D+      ++S+   +P+F GQTKTKL + + +   +
Sbjct: 301 RVINDYARKQKLMKENDDNLTGEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRTVTD 360

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
               + F  +L++NP    +++E  ++        +R +    RK A+    LPGKLADC
Sbjct: 361 RLFSEHFMKFLLENPSVGRQIVEKGLLASRARLAAKRAREVTRRKGALEISNLPGKLADC 420

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S N     ELFIVEGDSAGGSAKQ RNR  QA+LP+RGKILNV  A  +KI  N++I  L
Sbjct: 421 SSNDPEKCELFIVEGDSAGGSAKQGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 480

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G      +     RY K++IMTDADVDGAHI +LLLT FY+ M  ++E  ++++  
Sbjct: 481 FTAMGTGFGEDFDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYVYIAQ 540

Query: 577 PPLFRITQGTKSVYAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           PPL+ + QG    Y       EE  ++++         K  + R+KGLGEM   QL ET 
Sbjct: 541 PPLYGVKQGKNITYVQPGKNAEEELKQVVASLPAS--PKPSVQRYKGLGEMDDHQLWETT 598

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           MD + R + RV ++  +            LMG + + R  FI+E A ++ ++ 
Sbjct: 599 MDPSNRMMARVSVDDAI----AADQIFEMLMGDRVEPRRAFIEENAHYVKNLD 647


>gi|322376402|ref|ZP_08050895.1| DNA topoisomerase IV, B subunit [Streptococcus sp. M334]
 gi|321282209|gb|EFX59216.1| DNA topoisomerase IV, B subunit [Streptococcus sp. M334]
          Length = 647

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 240/653 (36%), Positives = 366/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGEVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V    +  +         E  EF++  G++ ++    E+
Sbjct: 186 IDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           + +++      + E  G     VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +++ ++F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|289167743|ref|YP_003446012.1| DNA topoisomerase IV, subunit B [Streptococcus mitis B6]
 gi|288907310|emb|CBJ22146.1| DNA topoisomerase IV, subunit B [Streptococcus mitis B6]
          Length = 649

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 240/653 (36%), Positives = 366/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVKDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V    +  +         E  EF++  G++ ++    E+
Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           + +++      + E  G     VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 475 EINTMIYTIGAGVGADFSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +++ ++F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|329116682|ref|ZP_08245399.1| DNA gyrase, B subunit [Streptococcus parauberis NCFD 2020]
 gi|326907087|gb|EGE54001.1| DNA gyrase, B subunit [Streptococcus parauberis NCFD 2020]
          Length = 650

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 253/654 (38%), Positives = 375/654 (57%), Gaps = 22/654 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
             +   +  YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A
Sbjct: 6   KQSNDKAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFA 65

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + IEV ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGL
Sbjct: 66  SHIEVYIEEDNSITVVDDGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGL 124

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS +L V V +  +I  Q+F RGI    L+   +  +  GT + F PDP+
Sbjct: 125 HGVGSSVVNALSSQLDVRVFKNGSIHYQEFKRGIVYDDLKIIGET-DLTGTTVHFTPDPE 183

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   FD  +L K  Q  A+L+  ++   +  +   E     + +++++ GG+ +Y++
Sbjct: 184 IFTETVEFDFEKLAKRVQELAFLNRGLRISIADKRNGIE-----QVKDYHYEGGIASYVE 238

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              E + +I         E  G     VE A+ +       + S+ N I T EGGTHE G
Sbjct: 239 FLNEKKDVIIEHPIFTDGEMDGI---AVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQG 295

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR I  YA+  +   +   ++  +D+      ++SV    P+F GQTKTKL + +
Sbjct: 296 FRTALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSE 355

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
             +       D    +L++NP  A K+++  I  S+ R+  ++ RE   +K+ +    LP
Sbjct: 356 VVKITNRLFSDALQRFLLENPQVARKIVDKGILASKARIAAKRAREVTRKKSGLEISNLP 415

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS N A   ELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N
Sbjct: 416 GKLADCSSNNASQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILAN 475

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  L  A+G    +++     RY K++IMTDADVDGAHI +LLLT  Y+ M  ++E  
Sbjct: 476 EEIRSLFTAMGTGFGAEFDVAKARYHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAG 535

Query: 571 HLFLISPPLFRITQGTKSV-YAH---DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +++  PP++ +  G++   Y     ++E   K   E    G+ +  + R+KGLGEM   
Sbjct: 536 FVYIAQPPIYGVKVGSEIKEYIQPGTNQEELLKASLEKYSVGRSRPTVQRYKGLGEMDDH 595

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET MD   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 596 QLWETTMDPEHRLMARVTVDD----AAEADKVFDMLMGDRVEPRREFIEENAVY 645


>gi|223932477|ref|ZP_03624479.1| DNA topoisomerase IV, B subunit [Streptococcus suis 89/1591]
 gi|330832700|ref|YP_004401525.1| topoisomerase IV subunit B [Streptococcus suis ST3]
 gi|223898931|gb|EEF65290.1| DNA topoisomerase IV, B subunit [Streptococcus suis 89/1591]
 gi|329306923|gb|AEB81339.1| topoisomerase IV subunit B [Streptococcus suis ST3]
          Length = 649

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 240/653 (36%), Positives = 372/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHH+  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGNGLHHMVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G L+V D GRG+PV  H     K T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLSVSDRGRGMPVGMH--ATGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F + G P++ LEK     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFEQGGKPVTTLEKIGTAPKSKTGTKVTFMPDDTIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L  +V    + ++         E+EE+++  G++ ++    E+
Sbjct: 186 TDFKFNTIAERLKESAFLLKQVTMTLTDER-------TGEQEEYHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++      + E  G     V+ A+ + +   +   S+ N + T +GGTHE+GL++A+
Sbjct: 239 KETLTPV-LYFEGEDAG---FQVQVAMQYNDGYSDNILSFVNNVRTKDGGTHETGLKLAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 VVDGIVSDKLTFFLLENGELASNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    S +  ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E   
Sbjct: 475 EINTMIYTIGAGVGSDFTLEDVNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     K  YA  +   + + ++F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKTEKIAYAWSDGELEDLRKDFGK----GFILQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  ++ LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVSVLMGDKVEPRRKWIEDNVKF 639


>gi|307709026|ref|ZP_07645486.1| DNA topoisomerase IV, B subunit [Streptococcus mitis SK564]
 gi|307620362|gb|EFN99478.1| DNA topoisomerase IV, B subunit [Streptococcus mitis SK564]
          Length = 647

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 244/653 (37%), Positives = 364/653 (55%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   I+ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGAIYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V    +  +         E  EF++  G++ ++    E+
Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDESVEFHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++      + E  G     VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KETLTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 475 EINTMIYTIGAGVGADFSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +      LEE +KH      + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGE----LEELRKHFGKGATLQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVRF 639


>gi|218898691|ref|YP_002447102.1| DNA topoisomerase IV, B subunit [Bacillus cereus G9842]
 gi|228902097|ref|ZP_04066261.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis IBL 4222]
 gi|228966492|ref|ZP_04127545.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|229075491|ref|ZP_04208480.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock4-18]
 gi|229098040|ref|ZP_04228990.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock3-29]
 gi|229117058|ref|ZP_04246440.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock1-3]
 gi|218543471|gb|ACK95865.1| DNA topoisomerase IV, B subunit [Bacillus cereus G9842]
 gi|228666462|gb|EEL21922.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock1-3]
 gi|228685477|gb|EEL39405.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock3-29]
 gi|228707740|gb|EEL59924.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock4-18]
 gi|228793214|gb|EEM40764.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228857523|gb|EEN02019.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis IBL 4222]
          Length = 654

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 240/651 (36%), Positives = 360/651 (55%), Gaps = 36/651 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AG+ + I V + 
Sbjct: 7   QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V+D GRG+P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 67  KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L VT+ R   I+ Q+F  G +P + LEK  K +   GT + F+PD  IF     
Sbjct: 125 NALSEWLVVTIKRDGNIYEQRFENGGVPATTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 182

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L +  +  A+L   +K     ++   E       + F++  G++ ++    E + 
Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DIFHYETGIEAFVSYLNEEKD 235

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I   +     E+ G      E A  + +     I S+ N + T +GGTHE+G + A+TR
Sbjct: 236 SIHPVV-YFTGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA       ++  ++   D+      I+SV + E   +F GQTK KL + +A+ ++
Sbjct: 292 VFNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSI 351

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453
           +  + +   ++L +NP  AT L+   ++ ++ R   RK RE  R    +K     L GKL
Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAVKAAQAREAARKAREEARSGKKKKKSEGTLSGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I
Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A+G    +++  ED+ Y+KV+IMTDAD DGAHI  LLLTFFY+ M  LIE   +F
Sbjct: 472 NTIIYAIGGGVGNEFAVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G        YA  +E    + ++  K       + R+KGLGEM A QL 
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGK----GYMLQRYKGLGEMNADQLW 587

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV+I+         +  +  LMG K + R K+I+    F
Sbjct: 588 ETTMNPETRTLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIERNVQF 634


>gi|229162430|ref|ZP_04290391.1| DNA topoisomerase 4 subunit B [Bacillus cereus R309803]
 gi|228620909|gb|EEK77774.1| DNA topoisomerase 4 subunit B [Bacillus cereus R309803]
          Length = 654

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 240/651 (36%), Positives = 360/651 (55%), Gaps = 36/651 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AG+ + I V + 
Sbjct: 7   QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V+D GRG+P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 67  KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L VT+ R   ++ Q+F  G IP + LEK  K +   GT + F+PD  IF     
Sbjct: 125 NALSEWLVVTIKRDGNVYEQRFENGGIPATTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 182

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L +  +  A+L   +K     ++   E       + F++  G++ ++    E + 
Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DVFHYETGIEAFVSYLNEEKD 235

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I   +     E+ G      E A  + +     I S+ N + T +GGTHE+G + A+TR
Sbjct: 236 SIHPVV-YFTGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA       ++  ++   D+      I+SV + E   +F GQTK KL + +A+ ++
Sbjct: 292 VFNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSI 351

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453
           +  + +   ++L +NP  AT L+   ++ ++ R   RK RE  R    +K     L GKL
Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAVKAAQAREAARKAREEARTGKKKKKSEGTLSGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I
Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A+G    +++  ED+ Y+KV+IMTDAD DGAHI  LLLTFFY+ M  LIE   +F
Sbjct: 472 NTIIYAIGGGVGNEFAVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G        YA  +E    + ++  K       + R+KGLGEM A QL 
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGK----GYMLQRYKGLGEMNADQLW 587

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV+I+         +  +  LMG K + R K+I+    F
Sbjct: 588 ETTMNPETRTLIRVKIDDASR----AERRVTTLMGDKVEPRRKWIERNVQF 634


>gi|199599527|ref|ZP_03212915.1| DNA topoisomerase IV subunit B [Lactobacillus rhamnosus HN001]
 gi|229552216|ref|ZP_04440941.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus
           LMS2-1]
 gi|258508414|ref|YP_003171165.1| DNA topoisomerase IV subunit B [Lactobacillus rhamnosus GG]
 gi|258539627|ref|YP_003174126.1| DNA topoisomerase IV subunit B [Lactobacillus rhamnosus Lc 705]
 gi|199589568|gb|EDY97686.1| DNA topoisomerase IV subunit B [Lactobacillus rhamnosus HN001]
 gi|229314402|gb|EEN80375.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus
           LMS2-1]
 gi|257148341|emb|CAR87314.1| DNA topoisomerase IV, B subunit [Lactobacillus rhamnosus GG]
 gi|257151303|emb|CAR90275.1| DNA topoisomerase IV, B subunit [Lactobacillus rhamnosus Lc 705]
 gi|259649728|dbj|BAI41890.1| DNA topoisomerase IV subunit B [Lactobacillus rhamnosus GG]
          Length = 670

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 248/660 (37%), Positives = 368/660 (55%), Gaps = 37/660 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
            A+  Y+ SSI++L GLE VR RPGMYIG TD + LHHL  E++DN++DE +AG+ + I 
Sbjct: 3   KATQAYNDSSIQVLHGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEIN 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +  +TV D+GRG+P   HP    K T+E+ILT LHAGGKF+ ++Y+ SGGLHGVG
Sbjct: 63  VTIHADNSVTVQDHGRGMPTGMHP--SGKPTIEVILTVLHAGGKFNQNSYKTSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
            SVVNALS+ L V V R    F + F + G P   L+K  KV    GT ITF+PDP +F 
Sbjct: 121 SSVVNALSESLTVRVVRDKHAFEEHFINGGHPDGGLQKLGKVNEPNGTTITFKPDPTVFQ 180

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F+   L +  +  A+L   +    + ++         + +++++P GL ++++   
Sbjct: 181 TTV-FNYDTLAERLRESAFLLKAITINLTDER-------TGKHDQYHYPDGLVSFVKYLN 232

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           E +  +S  I   + +K G     V++A  + +     I S+ N + T +GGTHE GLR 
Sbjct: 233 EGKDALSQVIN-FEGKKDGI---VVDFAGQYNDGYSENIISFVNNVRTGDGGTHEIGLRS 288

Query: 337 ALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392
            +TR   ++A      +    ++   D+     GILSV I E   +F GQTK KL +  A
Sbjct: 289 GMTRAFNEFARKVGLLKDRDKNLEGSDVREGFAGILSVRIPEEILQFEGQTKGKLGTPQA 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL--- 449
           +  V+  + D    +L++N  E+ +L+   I+  + R   RK R+ +R    RK      
Sbjct: 349 RTVVDGIVYDHLATFLMENGEESQELVRKAIKARDAREAARKARDDSRTGRKRKKDQGLL 408

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
            GKL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + I  
Sbjct: 409 SGKLTPAQTKNPKRNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIVK 468

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N++I  ++  +G    + +  +   Y K+IIMTDAD DGAHI  LLLTFFY+ M  LI+ 
Sbjct: 469 NEEINTMIYTIGAGVGADFDIQQANYNKIIIMTDADTDGAHIQILLLTFFYRYMRPLIDA 528

Query: 570 KHLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
             +++  PPL+R+ +G    TK  YA  +E   K  +   K       ++RFKGLGEM A
Sbjct: 529 GRVYIALPPLYRLQKGAGAKTKISYAWTDEELAKETKAMGK----GYTLTRFKGLGEMNA 584

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL ET M+   RTL+RV I+      +  +  +  LMG + + R ++I+    F  D+ 
Sbjct: 585 DQLWETTMNPETRTLIRVRIDD----AQLAERRVTTLMGDRVEPRREWIEHHVKF--DLD 638


>gi|307704622|ref|ZP_07641524.1| DNA topoisomerase IV, B subunit [Streptococcus mitis SK597]
 gi|307621824|gb|EFO00859.1| DNA topoisomerase IV, B subunit [Streptococcus mitis SK597]
          Length = 647

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 240/653 (36%), Positives = 364/653 (55%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   I+ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGAIYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V    +  +   E         F++  G++ ++    E+
Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKRTDEEIE-------FHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++      + E  G     VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KETLTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +++ ++F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|268324621|emb|CBH38209.1| DNA gyrase subunit B [uncultured archaeon]
          Length = 635

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 248/650 (38%), Positives = 372/650 (57%), Gaps = 22/650 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            ++Y A  I++L+ L  VR RP MYIG T  + LHHL +EVIDN++DE I G+   I V 
Sbjct: 2   EESYSAKDIQVLKDLTAVRKRPAMYIGDTGTRGLHHLANEVIDNSVDEAIIGFCTSIVVI 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  +TV DNGRGIPV+ H ++ N S LE+++T LHAGGKFDN  Y+++GGLHGVGIS
Sbjct: 62  IHPDNSVTVTDNGRGIPVDMHSEY-NLSALEVVMTKLHAGGKFDNKVYKVAGGLHGVGIS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK---KEKVRNKRGTRITFRPDPKIFG 217
           VVNALS+   V V R+   + Q++  G  +  +++     +   + GTR+ F+PD  IFG
Sbjct: 121 VVNALSEWQEVEVLREGKRYYQRYEHGKAVCEVKELSYTGENNGECGTRVRFKPDSTIFG 180

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               FDA  L    +  A+L+  +      ++   E+        F + GG+ ++L+   
Sbjct: 181 VY-EFDAHLLATRLRELAFLNRGLSLSLKDERSGEERA-------FKYEGGITSFLEYIN 232

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N+ ++ S I T + EK       V   + + +     I S+ N + T EGG H SG + 
Sbjct: 233 RNKKVLHSPI-TFEGEKDDV---KVAIGLQYNDSYAENIFSFVNNVKTVEGGKHLSGFKA 288

Query: 337 ALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           ALTR + +Y +     + +++  DD+      ++S+ +REP+F GQTKTKL + + +  V
Sbjct: 289 ALTRVLNEYGKSNNMLKKVNLDGDDVREGLAAVISLKLREPQFEGQTKTKLGNSEVKGIV 348

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           E+ +R+    +L +NP +   ++   +E S  R   R  RE+ RK       LPGKLADC
Sbjct: 349 ESFVREHLWDFLDENPKDGDAIIRKALEASRAREAARHAREIVRKKDSFADSLPGKLADC 408

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S+      E++IVEGDSAGGSAKQAR+++ QA+LP+RGKILNV  A  +KI  + +I  L
Sbjct: 409 SERDPAKKEIYIVEGDSAGGSAKQARDKNFQAILPIRGKILNVEKARLDKILKSNEIRTL 468

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + ALG      +  E  RY K+IIM+DADVDGAHI +LLLTFFY+ M +L+   H+++  
Sbjct: 469 ITALGAGIGDDFDMEKARYNKIIIMSDADVDGAHIRTLLLTFFYRYMQELVSANHIYVAL 528

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFK-KHGKGKIEISRFKGLGEMLASQLKETAMDA 635
           PPL+ + +G +  YA  ++    IL+E   K G   ++I  +KGLGEM   QL ET M+ 
Sbjct: 529 PPLYMVKKGKEIRYAFSDDEYVNILDELNVKEGDAGVKIQHYKGLGEMNPEQLWETTMNP 588

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             R +  V +        +       LMG + + R  FIQ  A  + ++ 
Sbjct: 589 ATRGIKLVTLED----AAEVDWLFTVLMGEEVEPRRNFIQAHAKEVMNLD 634


>gi|283958118|ref|ZP_06375569.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|283790267|gb|EFC29084.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus A017934/97]
          Length = 665

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 241/654 (36%), Positives = 361/654 (55%), Gaps = 31/654 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  +NY   SI++LEGLE VR RPGMYIG TD++ LHHL  E++DN++DEV+ GY N I+
Sbjct: 4   NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 63

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+++ +G +++ DNGRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG
Sbjct: 64  VTINKDGSISIEDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 121

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS+ L V + R   I+ Q F  G   S    K+    K GT++TF+PD  IF  
Sbjct: 122 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 181

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L +  Q  A+L   +K   +  +   E      +E +++  G+K ++    E
Sbjct: 182 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKE-----RQEHYHYEEGIKEFVSYVNE 236

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            + ++  ++ T   E  G     V+ A  + ++    I S+ N + T +GGTHE G + A
Sbjct: 237 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 292

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
           +TR    YA        +  ++  +D+      ++SV I E   +F GQTK+KL + +A+
Sbjct: 293 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR 352

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450
             V++ + D    YL +    +  L++  I+  + R   RK RE  R     K     L 
Sbjct: 353 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 412

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  E I  N
Sbjct: 413 GKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDILKN 472

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    + ++ ED  Y +VIIMTDAD DGAHI  LLLTFF++ M  L++  
Sbjct: 473 EEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 532

Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +F+  PPL+++ +G     +  YA  +E   K+ +E  K       + R+KGLGEM   
Sbjct: 533 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNPE 588

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET M+   RTL+RV++  ++ S K     +  LMG K   R ++I++   F
Sbjct: 589 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVQPRREWIEKHVEF 638


>gi|89101240|ref|ZP_01174064.1| DNA topoisomerase IV subunit B [Bacillus sp. NRRL B-14911]
 gi|89084046|gb|EAR63223.1| DNA topoisomerase IV subunit B [Bacillus sp. NRRL B-14911]
          Length = 661

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 247/651 (37%), Positives = 366/651 (56%), Gaps = 36/651 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AGY + I V + 
Sbjct: 11  DYNDDAIQVLEGLEAVRKRPGMYIGSTDARGLHHLVYEIVDNSVDEALAGYGDHIIVKIH 70

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V D GRG+P   H     K T EIILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 71  KDNSISVQDKGRGMPTGMHK--LGKPTPEIILTVLHAGGKFGQGGYKTSGGLHGVGASVV 128

Query: 163 NALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L V + R   ++ Q+F   G P + LEK  K  N+ GT I F+PDP IF     
Sbjct: 129 NALSEWLVVKIRRNGFVYEQRFENGGKPATTLEKVGKT-NQSGTVIHFKPDPAIFSTTV- 186

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L +  +  A+L   +K     ++  A       ++ F+F  G++ +++   E + 
Sbjct: 187 YNYETLCERLRESAFLMKGMKIELIDERHDA-------RDLFHFETGIEAFVEYLNEEKD 239

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340
           ++     + + E     +  V++A  + +   E   S+ N + T +GGTHE+G + A+TR
Sbjct: 240 VLHPV-VSFEGEHN---QIEVDFAFQFNDGYSENVLSFVNNVRTKDGGTHEAGSKTAMTR 295

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA       ++  ++   D+      I+SV + E   +F GQTK KL + +A+  V
Sbjct: 296 VFNEYARKVGLLKEKDKNLDGSDIREGFSAIISVRVPEELLQFEGQTKGKLGTSEARSAV 355

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKL 453
           +  + +   ++L +NP  ++ L++  I+  + R   RK RE  R    RK     L GKL
Sbjct: 356 DAVVSEHLSYFLEENPNISSLLIKKAIKAYQAREAARKAREEARGGKKRKRSEAVLSGKL 415

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A  + I  N++I
Sbjct: 416 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLQDIFKNEEI 475

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A+G    + +  ED+ YEKV+IMTDAD DGAHI  LLLTFFY+ M  LIE   +F
Sbjct: 476 NTIIHAIGAGVGADFNVEDVNYEKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 535

Query: 574 LISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G     K  YA  ++  Q  +++  K       I R+KGLGEM A QL 
Sbjct: 536 IALPPLYKVSKGIGKKEKIEYAWSDDELQGAMKKIGK----GYMIQRYKGLGEMNADQLW 591

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET MD   RTL+RV I+         +  +  LMG K + R K+I+   +F
Sbjct: 592 ETTMDPESRTLIRVRIDD----AARAERRVTTLMGDKVEPRRKWIETNVAF 638


>gi|229018787|ref|ZP_04175636.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH1273]
 gi|229025031|ref|ZP_04181459.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH1272]
 gi|228736237|gb|EEL86804.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH1272]
 gi|228742537|gb|EEL92688.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH1273]
          Length = 662

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 241/651 (37%), Positives = 361/651 (55%), Gaps = 36/651 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AG+ + I V + 
Sbjct: 15  QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 74

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V+D GRG+P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 75  KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 132

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L VT+ R  +I+ Q+F  G IP + LEK  K +   GT + F+PD  IF     
Sbjct: 133 NALSEWLVVTIKRDGSIYEQRFENGGIPATTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 190

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L +  +  A+L   +K     ++   E       + F++  G++ ++    E + 
Sbjct: 191 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DVFHYETGIEAFVSYLNEEKD 243

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I   +     E+ G      E A  + +     I S+ N + T +GGTHE+G + A+TR
Sbjct: 244 SIHPVV-YFTGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 299

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA       ++  ++   D+      I+SV + E   +F GQTK KL + +A+ ++
Sbjct: 300 VFNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSI 359

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453
           +  + +   ++L +NP  AT L+   ++ ++ R   RK RE  R    +K     L GKL
Sbjct: 360 DAIVSEHLAYFLEENPDVATLLVRKAVKAAQAREAARKAREEARTGKKKKKSEGTLSGKL 419

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I
Sbjct: 420 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 479

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A+G    +++  ED+ Y+KV+IMTDAD DGAHI  LLLTFFY+ M  LIE   +F
Sbjct: 480 NTIIYAIGGGVGNEFAVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 539

Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G        YA  +E    + ++  K       + R+KGLGEM A QL 
Sbjct: 540 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGK----GYMLQRYKGLGEMNADQLW 595

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV+I+         +  +  LMG K + R K+I+    F
Sbjct: 596 ETTMNPETRTLIRVKIDDASR----AERRVTTLMGDKVEPRRKWIERNVQF 642


>gi|194398307|ref|YP_002037488.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae G54]
 gi|194357974|gb|ACF56422.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae G54]
          Length = 647

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 240/653 (36%), Positives = 365/653 (55%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F   G P+  L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVMTLKKVGTAPKSKTGTKVTFMPDATIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V    +  +         E  EF++  G++ ++    E+
Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           + +++      + E  G     VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +++ ++F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|148988271|ref|ZP_01819718.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae SP6-BS73]
 gi|147925952|gb|EDK77026.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae SP6-BS73]
          Length = 647

 Score =  597 bits (1539), Expect = e-168,   Method: Composition-based stats.
 Identities = 240/653 (36%), Positives = 366/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V    +  +         E  EF++  G++ ++    E+
Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           + +++      + E  G     VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KEILTPV-LYFEGENNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKVMNDYARKTGLIKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +++ ++F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|302535567|ref|ZP_07287909.1| DNA gyrase subunit B [Streptomyces sp. C]
 gi|302444462|gb|EFL16278.1| DNA gyrase subunit B [Streptomyces sp. C]
          Length = 666

 Score =  597 bits (1539), Expect = e-168,   Method: Composition-based stats.
 Identities = 253/671 (37%), Positives = 377/671 (56%), Gaps = 26/671 (3%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A +  S   NYDAS+I++LEGL+ VR RPGMYIG T E+ LHHL  EV+DN++DE +AG+
Sbjct: 2   ADSGDSNEKNYDASAIQVLEGLDAVRKRPGMYIGSTGERGLHHLVYEVVDNSVDEALAGH 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ I+V++  +G + VVDNGRGIPV   P    K  +E++LT LHAGGKF    Y +SGG
Sbjct: 62  ADTIDVTILADGGVRVVDNGRGIPVGIVP-SEGKPAVEVVLTVLHAGGKFGGGGYAVSGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS ++ V V      ++Q +  G+P +PL K E+     GT +TF  D 
Sbjct: 121 LHGVGVSVVNALSTKVAVEVKTDGHRWTQDYKLGVPTAPLAKNEETAE-TGTSVTFWADG 179

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE------------KYGIPEKE 261
            IF     +    L +  Q  A+L+  +    + ++E A+                    
Sbjct: 180 DIFET-TEYSFETLSRRFQEMAFLNKGLTLTLTDERESAKATVGADDPDADAAEPSARTV 238

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
           ++++ GG+  +++     +  +          +      +VE A+ W  +    + S+ N
Sbjct: 239 KYFYEGGIVDFVKYLNSRKGELIHPTVIDVESEDKERMLSVEIAMQWNSQYTEGVYSFAN 298

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPE 378
           TI T EGGTHE G R ALT  + +YA   +   ++  ++  +D+      I+SV + EP+
Sbjct: 299 TIHTHEGGTHEEGFRAALTGLVNRYARDKKLLREKDDNLAGEDIREGLTAIISVKLGEPQ 358

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
           F GQTKTKL + +A+  V+  + +  + +  +NP+EA  ++   I+ +  R+  RK R++
Sbjct: 359 FEGQTKTKLGNTEAKTFVQKVVHEHLNDWFDRNPVEAADIVRKAIQAATARVAARKARDL 418

Query: 439 NRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
            R+   +    LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKIL
Sbjct: 419 TRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPMYQAILPIRGKIL 478

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557
           NV  A  +KI  N ++  L+ A G      +  E LRY K+I+M DADVDG HI +LLLT
Sbjct: 479 NVEKARIDKILQNTEVQALISAFGTGVHEDFDIEKLRYHKIILMADADVDGQHINTLLLT 538

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGK--GKIEI 614
           F ++ M  L+E  H++L  PPL++I  G     YA+ +  +  ++E  K++GK   +  I
Sbjct: 539 FLFRFMRPLVEAGHVYLSRPPLYKIKWGRDDFEYAYSDRERDALVELGKQNGKRIKEDSI 598

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
            RFKGLGEM A +L+ T MD + R L +V ++          D  + LMG   + R  FI
Sbjct: 599 QRFKGLGEMNAEELRVTTMDVDHRVLGQVTLDD----AAQADDLFSVLMGEDVEARRSFI 654

Query: 675 QERASFIDDVG 685
           Q  A  +  + 
Sbjct: 655 QRNAKDVRFLD 665


>gi|228940682|ref|ZP_04103245.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973600|ref|ZP_04134182.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980158|ref|ZP_04140472.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis Bt407]
 gi|228779516|gb|EEM27769.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis Bt407]
 gi|228786061|gb|EEM34058.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818926|gb|EEM64988.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326941316|gb|AEA17212.1| DNA topoisomerase IV subunit B [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 654

 Score =  597 bits (1539), Expect = e-168,   Method: Composition-based stats.
 Identities = 240/651 (36%), Positives = 360/651 (55%), Gaps = 36/651 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AG+ + I V + 
Sbjct: 7   QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V+D GRG+P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 67  KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L VT+ R   I+ Q+F  G +P + LEK  K +   GT + F+PD  IF     
Sbjct: 125 NALSEWLVVTIKRDGNIYEQRFENGGVPATTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 182

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L +  +  A+L   +K     ++   E       + F++  G++ ++    E + 
Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DVFHYETGIEAFVSYLNEEKD 235

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I   +     E+ G      E A  + +     I S+ N + T +GGTHE+G + A+TR
Sbjct: 236 SIHPVV-YFTGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA       ++  ++   D+      I+SV + E   +F GQTK KL + +A+ ++
Sbjct: 292 VFNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSI 351

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453
           +  + +   ++L +NP  AT L+   ++ ++ R   RK RE  R    +K     L GKL
Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAVKAAQAREAARKAREEARSGKKKKKSEGTLSGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I
Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A+G    +++  ED+ Y+KV+IMTDAD DGAHI  LLLTFFY+ M  LIE   +F
Sbjct: 472 NTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G        YA  +E    + ++  K       + R+KGLGEM A QL 
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGK----GYMLQRYKGLGEMNADQLW 587

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV+I+         +  +  LMG K + R K+I+    F
Sbjct: 588 ETTMNPETRTLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIERNVQF 634


>gi|293365618|ref|ZP_06612327.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus oralis ATCC
           35037]
 gi|307703568|ref|ZP_07640510.1| DNA topoisomerase IV, B subunit [Streptococcus oralis ATCC 35037]
 gi|291315986|gb|EFE56430.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus oralis ATCC
           35037]
 gi|307622975|gb|EFO01970.1| DNA topoisomerase IV, B subunit [Streptococcus oralis ATCC 35037]
          Length = 647

 Score =  597 bits (1539), Expect = e-168,   Method: Composition-based stats.
 Identities = 241/653 (36%), Positives = 366/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R  T++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V    +  +         E  EF++  G++ ++    E+
Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++      + E  G     VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KETLTPV-LYFEGEDNG---FQVEIALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 475 EINTMIYTIGAGVGADFSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +++ ++F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|116492722|ref|YP_804457.1| DNA topoisomerase IV subunit B [Pediococcus pentosaceus ATCC 25745]
 gi|116102872|gb|ABJ68015.1| DNA topoisomerase IV subunit B [Pediococcus pentosaceus ATCC 25745]
          Length = 679

 Score =  597 bits (1539), Expect = e-168,   Method: Composition-based stats.
 Identities = 250/657 (38%), Positives = 369/657 (56%), Gaps = 33/657 (5%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +++  +YD SSI++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DE + GY   
Sbjct: 2   AKTSKTSYDDSSIQVLEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALGGYGKE 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V++  +  +TVVD+GRG+PV  H     K T E+I T LHAGGKF    Y+ SGGLHG
Sbjct: 62  INVTIQADNSITVVDHGRGMPVGMHK--SGKPTPEVIFTVLHAGGKFGQGGYKTSGGLHG 119

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           VG SVVNALS++L V + R    + + F + G P+  L+K  K  NK GT +TF+PD +I
Sbjct: 120 VGASVVNALSEKLTVEIVRDKVKYEETFVNGGHPVGTLKKVGKTTNKNGTTVTFKPDKEI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     F+   L    +  A+L   VK   +  +E  E     + EE+ +  G+K ++  
Sbjct: 180 FTTTV-FNFNTLAVRLRESAFLLRGVKITLTDRREGHE-----QHEEYLYDEGIKQFVDY 233

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             E++  + +        KKG     VE A  + +     I S+ N + T +GGTHE G+
Sbjct: 234 LNEDKDTLGNI-MYFDGTKKGI---EVEVAGQYNDGYSETILSFVNNVRTRDGGTHEVGM 289

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390
           R   T+   ++A       ++  ++   D+      ++SV I E   EF GQTK KL + 
Sbjct: 290 RSGWTKAFNEFARKMGLLKEKDKNLEGSDVREGLSAVISVRIPEELLEFEGQTKEKLGTP 349

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR-- 448
           +A+  V+  + +    +L++N   A +L+   I   E R+  RK R+ +R    +K +  
Sbjct: 350 EARPIVDAIVSEQLGFFLMENGEFAQQLVRKAINAREARVAARKARDESRTGKRKKKQER 409

Query: 449 -LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            L GKL       +   ELF+VEGDSAGGSAKQ RNR  QA+LPLRGK+LN   A  + I
Sbjct: 410 ILSGKLTPAQSKNSKKNELFLVEGDSAGGSAKQGRNRKFQAILPLRGKVLNTEKAKLQDI 469

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N++I  ++  +G    +++  +D  Y+KVIIMTDAD DGAHI +LLLTFFY+ M  +I
Sbjct: 470 VKNEEINTIIYTIGAGVGTEFNVQDSNYDKVIIMTDADTDGAHIQTLLLTFFYKYMRPMI 529

Query: 568 EQKHLFLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
           +   +++  PPL+++ +G   K    YA  +E  + + ++  +       + RFKGLGEM
Sbjct: 530 DAGKIYIALPPLYKLQKGLNKKVKIAYAWTDEELESVSKQMGR----GFSLQRFKGLGEM 585

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            A QL ET M+   RTL+RV I+ D       +  +  LMG K + R K+I+   +F
Sbjct: 586 NADQLWETTMNPETRTLVRVRIDDDT----LAERRVTTLMGDKVEPRRKWIESNVAF 638


>gi|322375407|ref|ZP_08049920.1| DNA topoisomerase IV, B subunit [Streptococcus sp. C300]
 gi|321279670|gb|EFX56710.1| DNA topoisomerase IV, B subunit [Streptococcus sp. C300]
          Length = 649

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 239/653 (36%), Positives = 368/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R  T++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V    +  +         E  EF++  G++ ++    E+
Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++      + E+ G     +E A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KETLTPV-LYFEGEENG---FQIEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V++ + +    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 IVDSIVAEKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 475 EINTMIYTIGAGVGADFSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +++ ++F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|312864869|ref|ZP_07725100.1| DNA topoisomerase IV, B subunit [Streptococcus downei F0415]
 gi|311099996|gb|EFQ58209.1| DNA topoisomerase IV, B subunit [Streptococcus downei F0415]
          Length = 647

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 240/652 (36%), Positives = 364/652 (55%), Gaps = 36/652 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + IEV L 
Sbjct: 10  NYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLVWEIVDNAVDEALSGFGDRIEVVLH 69

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G ++V D+GRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 70  QDGSVSVTDSGRGMPTGMH--ATGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSVV 127

Query: 163 NALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           NALS  L V + R   I+ Q+F   G P++ LEK     ++K GT++TF+PD  IF    
Sbjct: 128 NALSSWLEVEITRDGAIYKQRFENGGKPVTELEKIGTAPKSKSGTKVTFKPDDSIFST-T 186

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    + +  +  A+L   V      ++   E        EF++  G++ ++    E++
Sbjct: 187 DFKFNTISERLKESAFLLKEVTLVLKDERTEEE-------VEFHYENGVQDFVHYLNEDK 239

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             ++      + E +G     V+ A+ + +   +   S+ N + T +GGTHE+GL+ A+T
Sbjct: 240 ETLTPV-IYFEGEDQG---FQVQVAMQYNDGFSDNILSFVNNVRTKDGGTHETGLKTAIT 295

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQRT 395
           + +  YA  T     +  ++   D       +LS+ +     +F GQTK KL S  A+  
Sbjct: 296 KAMNDYARKTGLLKDKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPGK 452
           V+  + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L GK
Sbjct: 356 VDGLVSDQLTFFLMENGELASSLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N++
Sbjct: 416 LTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMPDILKNEE 475

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++  +G      +  +D+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H+
Sbjct: 476 INTMIYTIGAGVGPDFSLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHV 535

Query: 573 FLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           ++  PPL+++++G     +  YA  +   + + ++F +       + R+KGLGEM A QL
Sbjct: 536 YIALPPLYKMSKGKGKKEQVEYAWTDGELEDLRQKFGRGAL----LQRYKGLGEMNADQL 591

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET MD + RTL+RV I      L   +  ++ LMG KA  R ++I++   F
Sbjct: 592 WETTMDPDNRTLIRVTIED----LARAERRVSVLMGDKAAPRRQWIEDNVKF 639


>gi|52549974|gb|AAU83823.1| DNA gyrase subunit B [uncultured archaeon GZfos34A6]
          Length = 635

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 247/650 (38%), Positives = 371/650 (57%), Gaps = 22/650 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            ++Y A  I++L+ L  VR RP MYIG T  + LHHL +EVIDN++DE + G+   I V 
Sbjct: 2   EESYSAKDIQVLKDLTAVRKRPAMYIGDTGTRGLHHLANEVIDNSVDEALIGFCTSIVVI 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  +TV DNGRGIPV+ H ++ N S LE+++T LHAGGKFDN  Y+++GGLHGVGIS
Sbjct: 62  IHPDNSVTVTDNGRGIPVDMHSEY-NLSALEVVMTKLHAGGKFDNKVYKVAGGLHGVGIS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG---TRITFRPDPKIFG 217
           VVNALS+   V V R    + Q++  G P+  +++        G   TR+TF+PD  IFG
Sbjct: 121 VVNALSEWQEVEVVRDGKRYFQRYEYGKPVCEVKELSYTDENNGECGTRVTFKPDSTIFG 180

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               FDA  L    +  A+L+  +      ++   ++        F + GG+ ++L+   
Sbjct: 181 VY-EFDAHILATRLRELAFLNRGLLLSLKDERSGEDRA-------FKYDGGITSFLEYIN 232

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N+ ++ S I T + EK       V   + + +     I S+ N + T EGG H SG + 
Sbjct: 233 RNKKVLHSPI-TFEGEKDDV---KVAIGLQYNDSYAENIFSFVNNVKTVEGGKHLSGFKA 288

Query: 337 ALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           ALTR + +Y +     + +++  DD+      I+S+ +REP+F GQTKTKL + + +  V
Sbjct: 289 ALTRVLNEYGKSNNMLKKVNLDGDDVREGLAAIISLKLREPQFEGQTKTKLGNSEVKGIV 348

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           E+ +R+    +L +NP +A  ++   +E S  R   R  RE+ RK       LPGKLADC
Sbjct: 349 ESFVREHLWDFLDENPKDADAIIRKALEASRAREAARHAREIVRKKDSFADSLPGKLADC 408

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S+      E++IVEGDSAGGSAKQAR+++ QA+LP+RGKILNV  A  +KI  + +I  L
Sbjct: 409 SERDPAKKEIYIVEGDSAGGSAKQARDKNFQAILPIRGKILNVEKARLDKILKSNEIRTL 468

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + ALG      +  +  RY K+IIM+DADVDGAHI +LLLTFFY+ M +L+   H+++  
Sbjct: 469 ITALGAGIGDDFDMQKARYNKIIIMSDADVDGAHIRTLLLTFFYRYMQELVTANHIYVAL 528

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFK-KHGKGKIEISRFKGLGEMLASQLKETAMDA 635
           PPL+ + +G +  YA  ++    IL++   K G   ++I  +KGLGEM   QL ET M+ 
Sbjct: 529 PPLYMVKKGKEIRYAFSDDEYVNILDDLNVKEGDAGVKIQHYKGLGEMNPEQLWETTMNP 588

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             R +  V +        +       LMG + + R  FI   A  + ++ 
Sbjct: 589 ATRGIKLVTLED----AAEVDWLFTVLMGEEVEPRRNFIHAHAKEVMNLD 634


>gi|317131014|ref|YP_004090328.1| DNA gyrase, B subunit [Ethanoligenens harbinense YUAN-3]
 gi|315468993|gb|ADU25597.1| DNA gyrase, B subunit [Ethanoligenens harbinense YUAN-3]
          Length = 642

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 244/654 (37%), Positives = 367/654 (56%), Gaps = 25/654 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +  + +Y A  I++LEGLE VR RPGMYIG T    LHHL  E++DNA+DE +AGY + I
Sbjct: 7   EPENKDYGADQIQVLEGLEAVRKRPGMYIGSTGSPGLHHLVYEIVDNAIDEALAGYCHNI 66

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V +     + V D+GRGIPV  HPK      + ++ T LHAGGKF    Y++SGGLHGV
Sbjct: 67  HVEILPENVIRVTDDGRGIPVGIHPKM-GIPAVTVVFTMLHAGGKFGGGGYKVSGGLHGV 125

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS+ L V VA +  ++ Q++ RG P++ LE      ++ G+ ITF+PD +IF 
Sbjct: 126 GASVVNALSEWLEVEVAHEGKLYQQRYERGTPVTKLEIVGDT-DRVGSIITFKPDCEIFE 184

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               +D   +L   + +A+L+  ++      +E          +   + GG++ ++Q   
Sbjct: 185 TCV-YDYDIILARLREQAFLNAGIRIVLEDKREP-----GGRNDSLCYEGGIREFVQYVH 238

Query: 278 ENR--SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
           + +  + +  ++       + +     E A+ + +     I S+ N I T EGGTHE+G 
Sbjct: 239 KRKGLTALHPDVIYFSASAETSM---AEVALQYNDSYNEVIYSFANDIHTVEGGTHETGF 295

Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           + ALTR    Y       +     +  +D+      ++SV + E  F GQTK KL + + 
Sbjct: 296 KSALTRVFNDYGRKYNILKDSDSKLSGEDVREGLTAVISVKLEEALFEGQTKAKLGNTEM 355

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           ++ V+  L D    Y  +NP  A  + +  +         R+ +    RK+A+    LPG
Sbjct: 356 RQLVDGMLYDKLMTYFEENPAVARSIFDKALAANRAREAARKARDLSRRKSALDSASLPG 415

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS      TE++IVEGDSAGGSAK+ R+R  QA+LPL GK+LNV  A  +++  N+
Sbjct: 416 KLADCSDKDNTYTEIYIVEGDSAGGSAKEGRDRKFQAILPLWGKMLNVEKARLDRVYGNE 475

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++M +V ALG      +    LRY K+IIM DADVDG+HI +LLLTFF++ M  LIE+ H
Sbjct: 476 KLMPVVTALGTGIGEDFDISKLRYGKIIIMADADVDGSHIRTLLLTFFFRFMRPLIEEGH 535

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPLF+I++G KSVYA  ++ +   + E      GK +I R+KGLGEM   QL ET
Sbjct: 536 IYIAQPPLFKISKGKKSVYAFSDKERDTAIAEMG----GKCDIQRYKGLGEMDPIQLWET 591

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            M+ + RT+LRV    D+       +    LMG K + R +FI+  A  + ++ 
Sbjct: 592 TMNPDGRTILRV----DMEDAAAADEIFTILMGDKVEPRREFIEVNAGKVRELD 641


>gi|257388769|ref|YP_003178542.1| DNA gyrase subunit beta [Halomicrobium mukohataei DSM 12286]
 gi|257171076|gb|ACV48835.1| DNA gyrase, B subunit [Halomicrobium mukohataei DSM 12286]
          Length = 641

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 241/650 (37%), Positives = 370/650 (56%), Gaps = 22/650 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y A  I++LEGL+ V+ RP MYIG TD + LHHL  EV+DN++DE +AG+ + I V++ 
Sbjct: 6   DYGAEQIQVLEGLQAVQKRPAMYIGSTDSRGLHHLVYEVVDNSIDEALAGHCDEITVTIH 65

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V D+GRGIPV+ H K  ++  LE+I+T LHAGGKFD+ +Y++SGGLHGVG+SVV
Sbjct: 66  EDDSVSVSDDGRGIPVDTHEKH-DRPALEVIMTVLHAGGKFDSKSYQVSGGLHGVGVSVV 124

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLE--KKEKVRNKRGTRITFRPDPKIFGDKA 220
           NALS  L V V R   ++ Q+F  G P   LE  +  +   + GT+I F PD +IF    
Sbjct: 125 NALSKWLEVEVKRDGAVWKQRFDHGEPEDELERVRDMEPDEETGTQIRFWPDDEIFEA-T 183

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  + L    +  A+L+  V+     +++        + E F + GG+K ++Q   E +
Sbjct: 184 DFVYSTLASRLRELAFLNSGVEISLVDERD-------GDSETFVYEGGIKEFVQYLNETK 236

Query: 281 SLISSEIFTGKTEKKGTHR-GTVEWAIA-WCEENPEITSYCNTILTDEGGTHESGLRVAL 338
             +  ++   + E++       VE A+    E    I ++ N I T EGG+H +G + AL
Sbjct: 237 EPLHRDVIYFEDEEQIEDGPVQVEIAMQGTAELQGSIHAFANNINTREGGSHMTGFKTAL 296

Query: 339 TRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  YA        +      +D+      ++S+   +P+F GQTKTKL + + +  V
Sbjct: 297 TRTVNDYATSNGLLNDLDDTLSGEDIREGLTAVISIKHPDPQFEGQTKTKLGNSEVRGIV 356

Query: 397 ENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           E+A+ D    +  +NP  A  ++ + V      +  ++ +    RK+A+    LPGKL+D
Sbjct: 357 ESAMHDGLGTFFEENPDTAEAIVGKAVEAAKARKAAKKAEELTRRKSALESTALPGKLSD 416

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C        ELF+VEGDSAGGSAKQ RN   QA+LP+RGKILNV     ++I  N  I +
Sbjct: 417 CQTRDPDDAELFVVEGDSAGGSAKQGRNPEFQAILPIRGKILNVERHRLDRILENDSIRN 476

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ ALG     ++  ED+RY+++I+MTDADVDGAHI +LLLT FY+ M  L+E  +++  
Sbjct: 477 VITALGTGIGDEFDVEDIRYKRIIMMTDADVDGAHIRTLLLTLFYRHMKPLLEAGYVYAA 536

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+R+    ++  A  E  + +++EE  K G    ++ RFKGLGEM   QL +T MD 
Sbjct: 537 QPPLYRVRYNGETYDAMTEAERDRLVEE--KCGGDPDQVQRFKGLGEMNPQQLWDTTMDP 594

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           ++R L ++ I              + LMG   + R +FI+E +   D V 
Sbjct: 595 DQRILKQITIED----AAAADKMFSVLMGDAVEPRKEFIKEHSPEADWVD 640


>gi|260101874|ref|ZP_05752111.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
           helveticus DSM 20075]
 gi|260084302|gb|EEW68422.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
           helveticus DSM 20075]
 gi|328468764|gb|EGF39735.1| DNA gyrase subunit B [Lactobacillus helveticus MTCC 5463]
          Length = 654

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 248/668 (37%), Positives = 366/668 (54%), Gaps = 20/668 (2%)

Query: 24  KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVID 83
             + +         +  +D Y+AS I++L GLE VR RPGMYIG T  + LHHL  E+ID
Sbjct: 2   ADNSKKNLDKVKKYEKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEIID 61

Query: 84  NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143
           N++DE +AG+A  IE++++ +G +TV D+GRGIPV+   K   +  LE + T LHAGGKF
Sbjct: 62  NSIDERLAGFATKIEITVNEDGSVTVQDDGRGIPVDIQKK-TGRPALETVFTVLHAGGKF 120

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NK 202
               Y++SGGLHGVG SVVNALS +L VTV R    +   F  G     +++   V   +
Sbjct: 121 GGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDGKKYFIDFDHGRVKDEMKQIGTVPLEQ 180

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT + F PDP IF +   FD   L    +  A+L+  +K  ++  ++ +      E + 
Sbjct: 181 HGTIVHFYPDPDIFTETTTFDDKILKNRIRELAFLNKGLKLTFTDKRKDS-----AETDV 235

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           + + GG+K Y+    + + ++  E    ++   G     VE A+ +       + ++ N 
Sbjct: 236 YKYEGGIKEYVAFLNKGQEVLFDEPIYVESTYNGI---DVEVALQYTNGYKTTLMTFANN 292

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I T EGG HE+G + ALTR +  YA   +    +  ++  +D+      ++SV    P+F
Sbjct: 293 IHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGMTAVVSVKHPSPQF 352

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-V 438
            GQTKTKL + DA+  V+ +  + F  +L++NP    K++E        R   +  RE  
Sbjct: 353 EGQTKTKLGNSDARTAVDKSFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKHAREVT 412

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            +K+ +    LPGKLAD + N    +ELFIVEG+SAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 413 RKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILN 472

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  NQ+I  L  ALG    + +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 473 VEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIRTLLLTL 532

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY  M  +IE+ ++++  PPL+++ QG    Y   +E     L   +     K  + R+K
Sbjct: 533 FYNYMRPMIEKGYVYIARPPLYQVRQGKVIKYLDTDEELHDYLGSLQPS--PKPVVQRYK 590

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           GLGEM   QL ET M+   R L RV         KD       LMG +   R  FIQ+ A
Sbjct: 591 GLGEMDPEQLWETTMNPENRRLDRVSPEY----AKDADAVFELLMGNEVAPRRDFIQKNA 646

Query: 679 SFIDDVGT 686
            +++++  
Sbjct: 647 KYVENLDA 654


>gi|295427868|ref|ZP_06820500.1| DNA topoisomerase IV [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|295128226|gb|EFG57860.1| DNA topoisomerase IV [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|298694654|gb|ADI97876.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 663

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 241/654 (36%), Positives = 361/654 (55%), Gaps = 31/654 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  +NY   SI++LEGLE VR RPGMYIG TD++ LHHL  E++DN++DEV+ GY N I+
Sbjct: 2   NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+++ +G +++ DNGRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG
Sbjct: 62  VTINKDGSISIEDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS+ L V + R   I+ Q F  G   S    K+    K GT++TF+PD  IF  
Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L +  Q  A+L   +K   +  +   E      +E +++  G+K ++    E
Sbjct: 180 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKE-----RQEHYHYEEGIKEFVSYVNE 234

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            + ++  ++ T   E  G     V+ A  + ++    I S+ N + T +GGTHE G + A
Sbjct: 235 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 290

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
           +TR    YA        +  ++  +D+      ++SV I E   +F GQTK+KL + +A+
Sbjct: 291 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR 350

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450
             V++ + D    YL +    +  L++  I+  + R   RK RE  R     K     L 
Sbjct: 351 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 410

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  E I  N
Sbjct: 411 GKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 470

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    + ++ ED  Y +VIIMTDAD DGAHI  LLLTFF++ M  L++  
Sbjct: 471 EEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 530

Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +F+  PPL+++ +G     +  YA  +E   K+ +E  K       + R+KGLGEM   
Sbjct: 531 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNPE 586

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET M+   RTL+RV++  ++ S K     +  LMG K   R ++I++   F
Sbjct: 587 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVQPRREWIEKHVEF 636


>gi|168485800|ref|ZP_02710308.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae
           CDC1087-00]
 gi|169834087|ref|YP_001694306.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae
           Hungary19A-6]
 gi|73916366|gb|AAZ93051.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916388|gb|AAZ93062.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916404|gb|AAZ93070.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|168996589|gb|ACA37201.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae
           Hungary19A-6]
 gi|183570930|gb|EDT91458.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae
           CDC1087-00]
          Length = 647

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 240/653 (36%), Positives = 367/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS+ L V + R   ++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSNWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V    +  +         E  EF++  G++ ++    E+
Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           + +++      + E  G     VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +++ ++F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|88195079|ref|YP_499879.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|151221479|ref|YP_001332301.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161509519|ref|YP_001575178.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|294848358|ref|ZP_06789105.1| DNA topoisomerase IV [Staphylococcus aureus A9754]
 gi|59799890|sp|P0A0K9|PARE_STAAW RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|84029386|sp|Q5HG65|PARE_STAAC RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|112823997|sp|Q2FYS5|PARE_STAA8 RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|112823998|sp|P0C1S7|PARE_STAAU RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|561879|gb|AAA53115.1| gyrase-like protein beta subunit [Staphylococcus aureus]
 gi|1777320|dbj|BAA11086.1| DNA topoisomerase IV GrlB subunit [Staphylococcus aureus]
 gi|87202637|gb|ABD30447.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|150374279|dbj|BAF67539.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160368328|gb|ABX29299.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|294825158|gb|EFG41580.1| DNA topoisomerase IV [Staphylococcus aureus A9754]
 gi|320140314|gb|EFW32172.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus MRSA131]
          Length = 663

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 241/654 (36%), Positives = 361/654 (55%), Gaps = 31/654 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  +NY   SI++LEGLE VR RPGMYIG TD++ LHHL  E++DN++DEV+ GY N I+
Sbjct: 2   NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+++ +G +++ DNGRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG
Sbjct: 62  VTINKDGSISIEDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS+ L V + R   I+ Q F  G   S    K+    K GT++TF+PD  IF  
Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L +  Q  A+L   +K   +  +   E      +E +++  G+K ++    E
Sbjct: 180 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKE-----RQEHYHYEEGIKEFVSYVNE 234

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            + ++  ++ T   E  G     V+ A  + ++    I S+ N + T +GGTHE G + A
Sbjct: 235 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 290

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
           +TR    YA        +  ++  +D+      ++SV I E   +F GQTK+KL + +A+
Sbjct: 291 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR 350

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450
             V++ + D    YL +    +  L++  I+  + R   RK RE  R     K     L 
Sbjct: 351 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 410

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  E I  N
Sbjct: 411 GKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 470

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    + ++ ED  Y +VIIMTDAD DGAHI  LLLTFF++ M  L++  
Sbjct: 471 EEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 530

Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +F+  PPL+++ +G     +  YA  +E   K+ +E  K       + R+KGLGEM   
Sbjct: 531 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNPE 586

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET M+   RTL+RV++  ++ S K     +  LMG K   R ++I++   F
Sbjct: 587 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVQPRREWIEKHVEF 636


>gi|323441138|gb|EGA98845.1| DNA topoisomerase IV subunit B [Staphylococcus aureus O11]
          Length = 663

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 241/654 (36%), Positives = 361/654 (55%), Gaps = 31/654 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  +NY   SI++LEGLE VR RPGMYIG TD++ LHHL  E++DN++DEV+ GY N I+
Sbjct: 2   NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+++ +G +++ DNGRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG
Sbjct: 62  VTINKDGSISIEDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS+ L V + R   I+ Q F  G   S    K+    K GT++TF+PD  IF  
Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDGTIFKA 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L +  Q  A+L   +K   +  +   E      +E +++  G+K ++    E
Sbjct: 180 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKE-----RQEHYHYEEGIKEFVSYVNE 234

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            + ++  ++ T   E  G     V+ A  + ++    I S+ N + T +GGTHE G + A
Sbjct: 235 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 290

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
           +TR    YA        +  ++  +D+      ++SV I E   +F GQTK+KL + +A+
Sbjct: 291 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR 350

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450
             V++ + D    YL +    +  L++  I+  + R   RK RE  R     K     L 
Sbjct: 351 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 410

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  E I  N
Sbjct: 411 GKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 470

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    + ++ ED  Y +VIIMTDAD DGAHI  LLLTFF++ M  L++  
Sbjct: 471 EEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 530

Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +F+  PPL+++ +G     +  YA  +E   K+ +E  K       + R+KGLGEM   
Sbjct: 531 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNPE 586

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET M+   RTL+RV++  ++ S K     +  LMG K   R ++I++   F
Sbjct: 587 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVQPRREWIEKHVEF 636


>gi|21282970|ref|NP_646058.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           MW2]
 gi|57650358|ref|YP_186242.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           COL]
 gi|87160112|ref|YP_493947.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|221141851|ref|ZP_03566344.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|258451752|ref|ZP_05699776.1| topoisomerase IV subunit B [Staphylococcus aureus A5948]
 gi|262049827|ref|ZP_06022690.1| DNA topoisomerase IV subunit B [Staphylococcus aureus D30]
 gi|262052164|ref|ZP_06024371.1| DNA topoisomerase IV subunit B [Staphylococcus aureus 930918-3]
 gi|282920622|ref|ZP_06328343.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A9765]
 gi|284024355|ref|ZP_06378753.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           132]
 gi|297207992|ref|ZP_06924423.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|300912076|ref|ZP_07129519.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|304381069|ref|ZP_07363723.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|21204409|dbj|BAB95106.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           MW2]
 gi|57284544|gb|AAW36638.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus COL]
 gi|87126086|gb|ABD20600.1| DNA topoisomerase IV, subunit B [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|257860583|gb|EEV83407.1| topoisomerase IV subunit B [Staphylococcus aureus A5948]
 gi|259159908|gb|EEW44945.1| DNA topoisomerase IV subunit B [Staphylococcus aureus 930918-3]
 gi|259162051|gb|EEW46630.1| DNA topoisomerase IV subunit B [Staphylococcus aureus D30]
 gi|269940852|emb|CBI49234.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282594284|gb|EFB99271.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A9765]
 gi|296887235|gb|EFH26137.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|300886322|gb|EFK81524.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|302751185|gb|ADL65362.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
           aureus subsp. aureus str. JKD6008]
 gi|304340378|gb|EFM06318.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|315196388|gb|EFU26740.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|329314032|gb|AEB88445.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329730909|gb|EGG67285.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 665

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 241/654 (36%), Positives = 361/654 (55%), Gaps = 31/654 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  +NY   SI++LEGLE VR RPGMYIG TD++ LHHL  E++DN++DEV+ GY N I+
Sbjct: 4   NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 63

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+++ +G +++ DNGRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG
Sbjct: 64  VTINKDGSISIEDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 121

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS+ L V + R   I+ Q F  G   S    K+    K GT++TF+PD  IF  
Sbjct: 122 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 181

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L +  Q  A+L   +K   +  +   E      +E +++  G+K ++    E
Sbjct: 182 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKE-----RQEHYHYEEGIKEFVSYVNE 236

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            + ++  ++ T   E  G     V+ A  + ++    I S+ N + T +GGTHE G + A
Sbjct: 237 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 292

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
           +TR    YA        +  ++  +D+      ++SV I E   +F GQTK+KL + +A+
Sbjct: 293 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR 352

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450
             V++ + D    YL +    +  L++  I+  + R   RK RE  R     K     L 
Sbjct: 353 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 412

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  E I  N
Sbjct: 413 GKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 472

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    + ++ ED  Y +VIIMTDAD DGAHI  LLLTFF++ M  L++  
Sbjct: 473 EEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 532

Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +F+  PPL+++ +G     +  YA  +E   K+ +E  K       + R+KGLGEM   
Sbjct: 533 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNPE 588

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET M+   RTL+RV++  ++ S K     +  LMG K   R ++I++   F
Sbjct: 589 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVQPRREWIEKHVEF 638


>gi|221231635|ref|YP_002510787.1| topoisomerase IV subunit B [Streptococcus pneumoniae ATCC 700669]
 gi|73916416|gb|AAZ93076.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916420|gb|AAZ93078.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916422|gb|AAZ93079.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916428|gb|AAZ93082.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916430|gb|AAZ93083.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916444|gb|AAZ93090.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916446|gb|AAZ93091.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|220674095|emb|CAR68613.1| topoisomerase IV subunit B [Streptococcus pneumoniae ATCC 700669]
          Length = 647

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 239/653 (36%), Positives = 366/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS+ L V + R   ++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSNWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V    +  +         E  EF++  G++ ++    E+
Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           + +++      + E  G     VE A+ + +   +   S+ N + T +GGTHE+G + A+
Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGFKSAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAVVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +++ ++F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|257425420|ref|ZP_05601845.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428080|ref|ZP_05604478.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430711|ref|ZP_05607093.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433471|ref|ZP_05609829.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436312|ref|ZP_05612359.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus M876]
 gi|282903934|ref|ZP_06311822.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905699|ref|ZP_06313554.1| DNA topoisomerase IV B subunit [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908667|ref|ZP_06316488.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282910936|ref|ZP_06318739.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282914143|ref|ZP_06321930.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus M899]
 gi|282919065|ref|ZP_06326800.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus C427]
 gi|282924248|ref|ZP_06331922.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus C101]
 gi|293501171|ref|ZP_06667022.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510132|ref|ZP_06668840.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus M809]
 gi|293526723|ref|ZP_06671408.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus M1015]
 gi|297591171|ref|ZP_06949809.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus aureus
           subsp. aureus MN8]
 gi|257271877|gb|EEV04015.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274921|gb|EEV06408.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278839|gb|EEV09458.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281564|gb|EEV11701.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284594|gb|EEV14714.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus M876]
 gi|282313635|gb|EFB44028.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus C101]
 gi|282316875|gb|EFB47249.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus C427]
 gi|282322211|gb|EFB52535.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus M899]
 gi|282325541|gb|EFB55850.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282327485|gb|EFB57777.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282330991|gb|EFB60505.1| DNA topoisomerase IV B subunit [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595552|gb|EFC00516.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus C160]
 gi|290920795|gb|EFD97858.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291096176|gb|EFE26437.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291467076|gb|EFF09594.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus M809]
 gi|297576057|gb|EFH94773.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus aureus
           subsp. aureus MN8]
 gi|302332970|gb|ADL23163.1| DNA topoisomerase (ATP-hydrolyzing) subunit B, ParE [Staphylococcus
           aureus subsp. aureus JKD6159]
 gi|312438246|gb|ADQ77317.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus aureus
           subsp. aureus TCH60]
          Length = 665

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 241/654 (36%), Positives = 361/654 (55%), Gaps = 31/654 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  +NY   SI++LEGLE VR RPGMYIG TD++ LHHL  E++DN++DEV+ GY N I+
Sbjct: 4   NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 63

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+++ +G +++ DNGRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG
Sbjct: 64  VTINKDGSISIEDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 121

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS+ L V + R   I+ Q F  G   S    K+    K GT++TF+PD  IF  
Sbjct: 122 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 181

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L +  Q  A+L   +K   +  +   E      +E +++  G+K ++    E
Sbjct: 182 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKE-----RQEHYHYEEGIKEFVSYVNE 236

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            + ++  ++ T   E  G     V+ A  + ++    I S+ N + T +GGTHE G + A
Sbjct: 237 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 292

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
           +TR    YA        +  ++  +D+      ++SV I E   +F GQTK+KL + +A+
Sbjct: 293 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR 352

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450
             V++ + D    YL +    +  L++  I+  + R   RK RE  R     K     L 
Sbjct: 353 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 412

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  E I  N
Sbjct: 413 GKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 472

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    + ++ ED  Y +VIIMTDAD DGAHI  LLLTFF++ M  L++  
Sbjct: 473 EEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 532

Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +F+  PPL+++ +G     +  YA  +E   K+ +E  K       + R+KGLGEM   
Sbjct: 533 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNPE 588

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET M+   RTL+RV++  ++ S K     +  LMG K   R ++I++   F
Sbjct: 589 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVQPRREWIEKHVEF 638


>gi|73916426|gb|AAZ93081.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
          Length = 647

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 238/653 (36%), Positives = 365/653 (55%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS+ L V + R   ++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSNWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V    +  +         E  EF++  G++ ++    E+
Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           + +++      + E  G     VE A+ + +   +   S+ N + T +GGTHE+G + A+
Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGFKSAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  Y   T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKVMNDYVRKTGLLKEKDKNLEGSDYREGLAVVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +++ ++F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|300023854|ref|YP_003756465.1| DNA topoisomerase IV subunit beta [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525675|gb|ADJ24144.1| DNA topoisomerase IV, B subunit [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 669

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 384/686 (55%), Positives = 489/686 (71%), Gaps = 19/686 (2%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           M    IDLFS    +    S + +K  E            S  Y    I +LEGLEPVR 
Sbjct: 1   MGRSQIDLFSEFDSEMTEKSSRARKPAE------------SAGYSEHDIEVLEGLEPVRR 48

Query: 61  RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           RPGMYIGGTDEKA+HHLF+EVIDN+MDE +AG+A  IEV L  +GFL V DNGRGIPV  
Sbjct: 49  RPGMYIGGTDEKAMHHLFAEVIDNSMDEAVAGHATWIEVELSADGFLAVTDNGRGIPVGP 108

Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
           +PK  + STLE++LT LHAGGKFD+  Y  SGGLHGVG+SVVNALS+ L V VAR   ++
Sbjct: 109 YPKNKSLSTLEVVLTVLHAGGKFDSKAYNTSGGLHGVGVSVVNALSETLEVQVARDQQLY 168

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
              FSRGIP + LEK   + N+RGT++ FRPD KIFG  A F  +RLLKM+++KAYL   
Sbjct: 169 RMVFSRGIPQTKLEKLGSIMNRRGTKVRFRPDEKIFGKGAAFKPSRLLKMSRAKAYLFAG 228

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
           V+  W C  E+  K   P +  F+FPGGL  YL   ++ R+ ++ +IF+G+ EK G H G
Sbjct: 229 VEIRWKCAPELI-KDDTPSEAVFHFPGGLADYLTESIDGRTRVTKDIFSGRIEKDGGH-G 286

Query: 301 TVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359
           +VEWA+AW  +E+    SYCNT+ T EGGTHE+GLR AL +G++ Y ELT NK+A  I S
Sbjct: 287 SVEWAVAWISDEDGFSLSYCNTVPTAEGGTHENGLRQALYKGLRAYGELTGNKKAQQITS 346

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           +D+M +A   LSVFIREPEF GQTK KL +++A + VE A+RD FDH+L  +P +ATKLL
Sbjct: 347 EDVMSTAASTLSVFIREPEFQGQTKDKLATVEATKIVEAAVRDAFDHWLADSPQQATKLL 406

Query: 420 EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           EW +++SEERL+RR+++EV R++A RKLRLPGKLADCS   A GTE+FIVEGDSAGGSAK
Sbjct: 407 EWTVDQSEERLKRRREKEVGRQSATRKLRLPGKLADCSIQQAAGTEIFIVEGDSAGGSAK 466

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
            AR+R  QA+LPLRGKILNVA+A S K+  NQ + DL+QALG  T ++YR+EDLRYE+VI
Sbjct: 467 SARDRETQAILPLRGKILNVANASSAKLSQNQLLADLIQALGAGTAAKYRDEDLRYERVI 526

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599
           IMTDADVDGAHIASLL+TFFYQEM +LIE  HLFL  PPL++I+  +   YA +E H+ +
Sbjct: 527 IMTDADVDGAHIASLLITFFYQEMPELIENGHLFLAVPPLYKISDKSDVAYARNEAHRDQ 586

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
           ++E   K+ K K  ++RFKGLGEM    LKET MD  +RTLLRV I +    +    + +
Sbjct: 587 LIETQFKNKKPK--VTRFKGLGEMDFKDLKETTMDKRRRTLLRVAIGEGERDM--LSEVV 642

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
           N LMG+K + RF+FIQERA+F  D+ 
Sbjct: 643 NSLMGSKPEARFRFIQERAAFAKDLD 668


>gi|253733399|ref|ZP_04867564.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|253728667|gb|EES97396.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           TCH130]
          Length = 665

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 241/654 (36%), Positives = 361/654 (55%), Gaps = 31/654 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  +NY   SI++LEGLE VR RPGMYIG TD++ LHHL  E++DN++DEV+ GY N I+
Sbjct: 4   NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 63

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+++ +G +++ DNGRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG
Sbjct: 64  VTINKDGSISIEDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 121

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS+ L V + R   I+ Q F  G   S    K+    K GT++TF+PD  IF  
Sbjct: 122 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 181

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L +  Q  A+L   +K   +  +   E      +E +++  G+K ++    E
Sbjct: 182 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKE-----RQEYYHYEEGIKEFVSYVNE 236

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            + ++  ++ T   E  G     V+ A  + ++    I S+ N + T +GGTHE G + A
Sbjct: 237 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 292

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
           +TR    YA        +  ++  +D+      ++SV I E   +F GQTK+KL + +A+
Sbjct: 293 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR 352

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450
             V++ + D    YL +    +  L++  I+  + R   RK RE  R     K     L 
Sbjct: 353 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 412

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  E I  N
Sbjct: 413 GKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 472

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    + ++ ED  Y +VIIMTDAD DGAHI  LLLTFF++ M  L++  
Sbjct: 473 EEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 532

Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +F+  PPL+++ +G     +  YA  +E   K+ +E  K       + R+KGLGEM   
Sbjct: 533 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNPE 588

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET M+   RTL+RV++  ++ S K     +  LMG K   R ++I++   F
Sbjct: 589 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVQPRREWIEKHVEF 638


>gi|315222934|ref|ZP_07864813.1| DNA topoisomerase IV, B subunit [Streptococcus anginosus F0211]
 gi|315187884|gb|EFU21620.1| DNA topoisomerase IV, B subunit [Streptococcus anginosus F0211]
          Length = 649

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 241/653 (36%), Positives = 364/653 (55%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLVWEIVDNAVDEALSGFGDKIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G LTV D+GRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  HKDGSLTVADHGRGMPVGMH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEK-VRNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R  TI+ Q+F   G P + L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGTIYKQRFENGGKPATTLKKIGTAAKSKSGTKVTFMPDDTIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V    + ++         E  +F++  G++ ++    E+
Sbjct: 186 TDFKYNTISERLNESAFLLKNVHLSLTDER-------TGESVDFHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++      + E+ G     VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KETLTPV-LYFEGEEGG---FQVEVALQYNDGYSDNILSFVNNVRTKDGGTHETGLKSAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451
            V++ + D    +L++N   A+ L+   I+  + R   RK R+ +R     K       G
Sbjct: 355 AVDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRSGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    S +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 475 EINTMIYTIGAGVGSDFSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G        YA  +   + + ++F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKNEVVEYAWTDGELEDLRKKFGKGAM----LQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I+     L   +  +N LMG K   R K+I++   F
Sbjct: 591 LWETTMNPENRTLIRVTIDD----LARAERRVNVLMGDKVPPRRKWIEDNVKF 639


>gi|89070780|ref|ZP_01158033.1| DNA topoisomerase IV subunit B [Oceanicola granulosus HTCC2516]
 gi|89043622|gb|EAR49829.1| DNA topoisomerase IV subunit B [Oceanicola granulosus HTCC2516]
          Length = 652

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 335/652 (51%), Positives = 436/652 (66%), Gaps = 10/652 (1%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
             +  D YDASSI +LEGLEPVR RPGMYIGGTDE+ALHHL +EV+DN+MDE +AG+AN 
Sbjct: 7   KGTEPDTYDASSIEVLEGLEPVRKRPGMYIGGTDERALHHLVAEVLDNSMDEAVAGHANR 66

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV L  +  +T+ DNGRG+P E HPKFP KSTLE+IL TLHAGGKF    Y+ SGGLHG
Sbjct: 67  IEVELHDDHAITIRDNGRGMPFEEHPKFPGKSTLEVILCTLHAGGKFSGKAYQTSGGLHG 126

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALSD + V VAR   +  Q+FSRG+PL P+ +     N+RGT  TF  D +IF
Sbjct: 127 VGASVVNALSDSMVVQVARDRKLVEQRFSRGVPLGPVAEVGAAPNRRGTTTTFHADEQIF 186

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                F  ARL KM +SKAYL   V+  W   K   +    P +  F+FPGGL  YL   
Sbjct: 187 -GHHRFKPARLFKMVRSKAYLFSGVEIRW---KSAIDDGETPREATFHFPGGLSDYLVET 242

Query: 277 LENRSLISSEIFTG--KTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESG 333
           L + S  + + F G    + + +  G VEWAI W    +  I SYCNT+ T EGGTHE G
Sbjct: 243 LGSASTYADKPFAGTVDFQSRFSTPGKVEWAINWTPARDGFIQSYCNTVPTPEGGTHEQG 302

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
              A+ +GI+ Y EL  N++A  I  DDL+     ++S FIREPEF GQTK +L + +A 
Sbjct: 303 FWAAILKGIRAYGELVNNRKAKDITRDDLVTGGCALVSCFIREPEFVGQTKDRLATTEAA 362

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
           + VE A+RD FDH+L  +   A  +L++++ R+EERLRRR+++E  RK+A +KLRLPGKL
Sbjct: 363 KLVEAAVRDHFDHWLTSDTKSAGAILDFLVLRAEERLRRRQEKETARKSATKKLRLPGKL 422

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
            DCS +   GTELFIVEGDSAGGSAK AR+R  QA+LPLRGKILNV  A + K+ +N +I
Sbjct: 423 VDCSTSARDGTELFIVEGDSAGGSAKMARDRKTQALLPLRGKILNVLGAAASKLGSNAEI 482

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            DL QALG    +++  +DLRY+K+IIMTDADVDGAHIASLL+TFFY +M  LI+  HL+
Sbjct: 483 NDLAQALGVGLGTKFSIDDLRYDKIIIMTDADVDGAHIASLLMTFFYTQMRPLIDHGHLY 542

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           L  PPL+R+TQG K +Y  D+  K   + +        I++ RFKGLGEM A  LK+T M
Sbjct: 543 LACPPLYRLTQGAKRLYVADDREKDYWMGKGLGGKGK-IDVQRFKGLGEMDAKDLKDTTM 601

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +   R L+RV ++       +T D + +LMG K + RF++I E A F++++ 
Sbjct: 602 NPETRKLIRVSLHD--EEPGETADLVERLMGKKPELRFQYISENARFVEELD 651


>gi|228909407|ref|ZP_04073232.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis IBL 200]
 gi|228850184|gb|EEM95013.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis IBL 200]
          Length = 654

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 241/651 (37%), Positives = 360/651 (55%), Gaps = 36/651 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AG+ + I V + 
Sbjct: 7   QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V+D GRG+P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 67  KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L VT+ R   I+ Q+F  G IP + LEK  K +   GT + F+PD  IF     
Sbjct: 125 NALSEWLVVTIKRDGNIYEQRFENGGIPATTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 182

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L +  +  A+L   +K     ++   E       + F++  G++ ++    E + 
Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DIFHYETGIEAFVSYLNEEKD 235

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I   +     E+ G      E A  + +     I S+ N + T +GGTHE+G + A+TR
Sbjct: 236 SIHPVV-YFTGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA       ++  ++   D+      I+SV + E   +F GQTK KL + +A+ ++
Sbjct: 292 VFNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSI 351

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453
           +  + +   ++L +NP  AT L+   ++ ++ R   RK RE  R    +K     L GKL
Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAVKAAQAREAARKAREEARSGKKKKKSEGTLSGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I
Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A+G    +++  ED+ Y+KV+IMTDAD DGAHI  LLLTFFY+ M  LIE   +F
Sbjct: 472 NTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G        YA  +E    + ++  K       + R+KGLGEM A QL 
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGK----GYMLQRYKGLGEMNADQLW 587

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV+I+         +  +  LMG K + R K+I+    F
Sbjct: 588 ETTMNPETRTLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIERNVQF 634


>gi|72160412|ref|YP_288069.1| DNA gyrase subunit B [Thermobifida fusca YX]
 gi|71914144|gb|AAZ54046.1| DNA gyrase subunit B [Thermobifida fusca YX]
          Length = 661

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 255/653 (39%), Positives = 366/653 (56%), Gaps = 22/653 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YDA SI +LEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +AGYA  IEV+L  
Sbjct: 19  YDARSITVLEGLEAVRKRPGMYIGSTGERGLHHLVQEVVDNSVDEALAGYATAIEVTLLA 78

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G + V DNGRGIPV+ HP    K  +E++LTTLHAGGKFD+ +Y +SGGLHGVG+SVVN
Sbjct: 79  DGGVRVTDNGRGIPVDPHP-VEKKPAVELVLTTLHAGGKFDSKSYAVSGGLHGVGVSVVN 137

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS  L V V R   +++Q +    P++ L ++E   ++ GT+ITF PD  IF     F+
Sbjct: 138 ALSTRLEVEVRRDGYLWTQSYEMTKPVTELIRREPT-DETGTQITFWPDGSIFET-TTFN 195

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L +  Q  A+L+  +      ++        P  + +Y+ GGL  +++     +  +
Sbjct: 196 FETLSRRLQEMAFLNKGLSITIRDER-PEFVGDSPVTQTYYYEGGLSDFVRHLNATKEPV 254

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
            S I   +    G     VE A+ W +     + ++ NTI T EGGTHE G R ALT  +
Sbjct: 255 HSSIIAFEEAGDGI---AVEIAMQWNQSYTSSVHTFANTINTAEGGTHEEGFRAALTSIV 311

Query: 343 KKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
            +YA   +    +  ++  DD+      I+SV + +P+F GQTKTKL + +A+  V+   
Sbjct: 312 NRYARDQKLLRDKDENLTGDDIREGLTAIVSVKLADPQFEGQTKTKLGNTEAKSFVQKVC 371

Query: 401 RDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
            +    +L +NP EA  ++ +           R+ +    RKT +    LPGKLADC   
Sbjct: 372 HEYLRDWLDRNPGEAKDIVTKATQAARARIAARQARELTRRKTLLESTSLPGKLADCQST 431

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
                E++IVEGDSAGGSAK  R+   QA+LP+RGKILNV  A  ++I  N ++  ++ A
Sbjct: 432 DPERCEVYIVEGDSAGGSAKGGRDPYYQAILPIRGKILNVEKARIDRILKNNEVQAIITA 491

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           LG      +    LRY K+I+M DADVDG HI +LLLT  ++ M  LIE  H++L  PPL
Sbjct: 492 LGTGIHDDFDITKLRYHKIILMADADVDGQHIRTLLLTLLFRFMKPLIEAGHVYLAQPPL 551

Query: 580 FRIT---QGTKSVYAHDEEHKQKILEEFKKHGKGKIE----ISRFKGLGEMLASQLKETA 632
           ++I    +GT   YA+ +  + + +      GK        + RFKGLGEM  S+L ET 
Sbjct: 552 YKIKWDPRGTDVDYAYSDRERDEKIAAGIAAGKKDPRPRDLVQRFKGLGEMNPSELWETT 611

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           MD  +R LL+V ++          +  + LMG   + R  FIQ  A  +  + 
Sbjct: 612 MDPERRVLLQVTLDD----AAQADEMFSVLMGEDVESRRAFIQRNARDVRFLD 660


>gi|306825057|ref|ZP_07458399.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|304432493|gb|EFM35467.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
          Length = 649

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 238/653 (36%), Positives = 364/653 (55%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVEDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V    +  +         E  E+++  G++ ++    E+
Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEYHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++      + E  G     VE A+ + +   +   S+ N + T +GGTHE+G + A+
Sbjct: 239 KETLTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGFKSAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 VVDGIVSDKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +++ ++F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGA----TLQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|150393905|ref|YP_001316580.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           JH1]
 gi|295406298|ref|ZP_06816105.1| DNA topoisomerase IV [Staphylococcus aureus A8819]
 gi|297244527|ref|ZP_06928410.1| DNA topoisomerase IV [Staphylococcus aureus A8796]
 gi|54038819|sp|P66939|PARE_STAAN RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|54041931|sp|P66938|PARE_STAAM RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|1777317|dbj|BAA11084.1| DNA topoisomerase IV GrlB subunit [Staphylococcus aureus]
 gi|149946357|gb|ABR52293.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus JH1]
 gi|294968886|gb|EFG44908.1| DNA topoisomerase IV [Staphylococcus aureus A8819]
 gi|297178557|gb|EFH37803.1| DNA topoisomerase IV [Staphylococcus aureus A8796]
          Length = 663

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 241/654 (36%), Positives = 362/654 (55%), Gaps = 31/654 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  +NY   SI++LEGLE VR RPGMYIG TD++ LHHL  E++DN++DEV+ GY N I+
Sbjct: 2   NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+++ +G +++ DNGRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG
Sbjct: 62  VTINKDGSISIEDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS+ L V + R  +I+ Q F  G   S    K+    K GT++TF+PD  IF  
Sbjct: 120 ASVVNALSEWLEVEIHRDGSIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L +  Q  A+L   +K   +  +   E      +E +++  G+K ++    E
Sbjct: 180 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKE-----RQEHYHYEEGIKEFVSYVNE 234

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            + ++  ++ T   E  G     V+ A  + ++    I S+ N + T +GGTHE G + A
Sbjct: 235 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 290

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
           +TR    YA        +  ++  +D+      ++SV I E   +F GQTK+KL + +A+
Sbjct: 291 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR 350

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450
             V++ + D    YL +    +  L++  I+  + R   RK RE  R     K     L 
Sbjct: 351 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 410

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  E I  N
Sbjct: 411 GKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 470

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    + ++ ED  Y +VIIMTDAD DGAHI  LLLTFF++ M  L++  
Sbjct: 471 EEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 530

Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +F+  PPL+++ +G     +  YA  +E   K+ +E  K       + R+KGLGEM   
Sbjct: 531 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNPE 586

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET M+   RTL+RV++  ++ S K     +  LMG K   R ++I++   F
Sbjct: 587 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVQPRREWIEKHVEF 636


>gi|308175819|ref|YP_003915225.1| DNA gyrase subunit B [Arthrobacter arilaitensis Re117]
 gi|307743282|emb|CBT74254.1| DNA gyrase subunit B [Arthrobacter arilaitensis Re117]
          Length = 687

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 240/691 (34%), Positives = 363/691 (52%), Gaps = 28/691 (4%)

Query: 17  QGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHH 76
              +   ++  E   +           Y A  I +LEGLE VR RPGMYIG T  + LHH
Sbjct: 2   STENASPQEPAESQAAAESMTSKVEHTYGAQDITVLEGLEAVRKRPGMYIGSTGPRGLHH 61

Query: 77  LFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTT 136
           L  EV+DN++DE +AGY + I V+L  +G +   DNGRGIPV+ HP    K T+E+++T 
Sbjct: 62  LVYEVVDNSVDEALAGYCDTINVTLQADGGVRCEDNGRGIPVDVHP-TEGKPTVEVVMTI 120

Query: 137 LHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK 196
           LHAGGKF    Y +SGGLHGVGISVVNALS++++  V RQ   +   F  G   +    K
Sbjct: 121 LHAGGKFGGGGYAVSGGLHGVGISVVNALSEKVNTIVRRQGHAWRIGFGNGGHTTQQLTK 180

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA---- 252
            +  ++ GT  TF PDP+IF     FD   L    Q  A+L+  ++   + ++       
Sbjct: 181 GEETDRTGTSQTFYPDPEIFET-VEFDFETLRARFQQMAFLNKGLRITLTDERPQDNAEP 239

Query: 253 ---------EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG-TV 302
                     +   P   ++ +  GL  Y++     + +          E + + RG ++
Sbjct: 240 EAEVEEEIENQVVKPRTVDYLYKDGLLDYVKHLNAAKKIELVHDEVIAFESEDSKRGISL 299

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359
           E A+ W       + +Y NTI T EGGTHE G R ALT  + +YA   +   ++  ++  
Sbjct: 300 EIAMQWTNAYAESVHTYANTINTHEGGTHEEGFRAALTGLLNRYARDNKILREKDDNLTG 359

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           +D       ++SV + EP+F GQTKTKL +  A+  V+  + +    +  +NP  A  ++
Sbjct: 360 EDAREGLTAVISVKLSEPQFEGQTKTKLGNSMARGFVQGVVNEELGDWFERNPNVARDII 419

Query: 420 EWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
                 S+ R+  RK R+  R+ + +    +PGKL+DCS       E+FIVEGDSAGGSA
Sbjct: 420 RKAQLASQARMAARKARDNARRKSPMESFGMPGKLSDCSSKNPAECEVFIVEGDSAGGSA 479

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538
           K+ R+   QA+LPLRGKILNV  A  ++   N ++  ++ A G     ++    LRY K+
Sbjct: 480 KRGRDPHTQAILPLRGKILNVERARLDRALGNAEVQAMITAFGTGIGEEFDMAKLRYHKI 539

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHK 597
           ++M DADVDG HI +LLLT  ++ M  LIE  +++L +PPL+RI     +  Y   ++ +
Sbjct: 540 VLMADADVDGQHITTLLLTLIFRFMRPLIEHGYVYLAAPPLYRIKWSNAAHDYVFSDKER 599

Query: 598 QKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
              L   +   K   +   I R+KGLGEM  S+L +T MD  +RTL +V ++        
Sbjct: 600 DDALLAGQASNKRLPKDNGIQRYKGLGEMDYSELWDTTMDPERRTLRQVTMDD----AAA 655

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
             +  + LMG   + R  FIQ+ A  +  + 
Sbjct: 656 ADEVFSVLMGEDVESRRNFIQQNAKDVRFLD 686


>gi|16082085|ref|NP_394515.1| DNA gyrase subunit B [Thermoplasma acidophilum DSM 1728]
 gi|10640369|emb|CAC12183.1| probable DNA gyrase, subunit B (gyrB) [Thermoplasma acidophilum]
          Length = 641

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 262/659 (39%), Positives = 369/659 (55%), Gaps = 33/659 (5%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
             DNYD+S I+ILEGL+ VR  PGMYIG TD + LHHL  EV+DN++DE +AGY + I V
Sbjct: 2   TEDNYDSSQIQILEGLKAVRKVPGMYIGSTDTRGLHHLVYEVVDNSVDESVAGYCSRIYV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            +  +G +TV D+GRGIPV+ HPK+ N+  LEI+LT LH+G KFD   Y+I+GGLHGVG+
Sbjct: 62  VMGSDGSITVEDDGRGIPVDIHPKY-NRPGLEIVLTELHSGAKFDKKVYKITGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-----------KRGTRIT 208
            VVNALS +L   V R   I+   F +GIP+S L+    V               GT I 
Sbjct: 121 HVVNALSKKLIAVVKRDGKIYYDIFEQGIPVSGLKTASDVSEIEKLGIKIQFPDHGTIIK 180

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F PDP IF     F    +L      +YL+ ++   +  +    E       +  +  GG
Sbjct: 181 FYPDPDIFETT-EFSYETILARLTDLSYLNPQLTITFLDEASGRE-------DVLHHEGG 232

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGG 328
           L   ++   E + ++   ++  +         ++ +     +    + S+ N I T EGG
Sbjct: 233 LIELVRHLSEGKEVLMDPLYLKEEVDSHMVEFSLLYTT---DVQETLMSFVNNISTPEGG 289

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISI-ISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           TH +G    L+R I+ YA      + +     DD+    + +L V ++ P+F GQTK+KL
Sbjct: 290 THVAGFHQGLSRAIQDYARSNNKIKGVEDITGDDVKEGVIAVLHVKMQNPQFEGQTKSKL 349

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
            +   +  V++        ++  NP  A  ++  V+  +  R   RK +E V RK+A+  
Sbjct: 350 GNSSVRGIVQSVTSKFMKTFMETNPHVADVIIGRVLSAAAAREASRKAKELVRRKSALEG 409

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADCS N    +EL+IVEGDSAGGSAKQARNR  QAVLPLRGKILNV  A   K
Sbjct: 410 GGLPGKLADCSSNDPSNSELYIVEGDSAGGSAKQARNRQYQAVLPLRGKILNVEKASDMK 469

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           +  N+ I DLV A+G   +     + LRY K+IIMTDADVDGAHI +LLLTFF++    L
Sbjct: 470 VVENEIIHDLVVAIGTGVKEDLNPKKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYARSL 529

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           IE  ++F   PPL+RI +G    Y + +E K+++  EF  +      I RFKGLGEM   
Sbjct: 530 IENGNVFFAEPPLYRIQKGQNVRYVYSDEEKEQVSREFGPNAI----IQRFKGLGEMNPE 585

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           QL ET M+   R L++V I       ++ +     LMG K + R KFI+E A + +++ 
Sbjct: 586 QLWETTMNPKTRKLVQVTIED----AEEAERIFTILMGEKVEPRRKFIEENAVYAENID 640


>gi|15924344|ref|NP_371878.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15926934|ref|NP_374467.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           N315]
 gi|148267843|ref|YP_001246786.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           JH9]
 gi|156979673|ref|YP_001441932.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253317051|ref|ZP_04840264.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|255006142|ref|ZP_05144743.2| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257795590|ref|ZP_05644569.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A9781]
 gi|258413400|ref|ZP_05681676.1| topoisomerase IV subunit B [Staphylococcus aureus A9763]
 gi|258420494|ref|ZP_05683436.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A9719]
 gi|258434734|ref|ZP_05688808.1| topoisomerase IV subunit B [Staphylococcus aureus A9299]
 gi|258444690|ref|ZP_05693019.1| topoisomerase IV subunit B [Staphylococcus aureus A8115]
 gi|258447475|ref|ZP_05695619.1| DNA topoisomerase IV, subunit B [Staphylococcus aureus A6300]
 gi|258454696|ref|ZP_05702660.1| topoisomerase IV subunit B [Staphylococcus aureus A5937]
 gi|269202977|ref|YP_003282246.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282892845|ref|ZP_06301080.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A8117]
 gi|282928913|ref|ZP_06336502.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A10102]
 gi|296275475|ref|ZP_06857982.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           MR1]
 gi|13701151|dbj|BAB42446.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247125|dbj|BAB57516.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|147740912|gb|ABQ49210.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           JH9]
 gi|156721808|dbj|BAF78225.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257789562|gb|EEV27902.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A9781]
 gi|257839964|gb|EEV64432.1| topoisomerase IV subunit B [Staphylococcus aureus A9763]
 gi|257843442|gb|EEV67849.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A9719]
 gi|257849095|gb|EEV73077.1| topoisomerase IV subunit B [Staphylococcus aureus A9299]
 gi|257850183|gb|EEV74136.1| topoisomerase IV subunit B [Staphylococcus aureus A8115]
 gi|257853666|gb|EEV76625.1| DNA topoisomerase IV, subunit B [Staphylococcus aureus A6300]
 gi|257863079|gb|EEV85843.1| topoisomerase IV subunit B [Staphylococcus aureus A5937]
 gi|262075267|gb|ACY11240.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282589422|gb|EFB94512.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A10102]
 gi|282764842|gb|EFC04967.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A8117]
 gi|315131157|gb|EFT87141.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|329727072|gb|EGG63528.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 665

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 241/654 (36%), Positives = 362/654 (55%), Gaps = 31/654 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  +NY   SI++LEGLE VR RPGMYIG TD++ LHHL  E++DN++DEV+ GY N I+
Sbjct: 4   NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 63

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+++ +G +++ DNGRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG
Sbjct: 64  VTINKDGSISIEDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 121

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS+ L V + R  +I+ Q F  G   S    K+    K GT++TF+PD  IF  
Sbjct: 122 ASVVNALSEWLEVEIHRDGSIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 181

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L +  Q  A+L   +K   +  +   E      +E +++  G+K ++    E
Sbjct: 182 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKE-----RQEHYHYEEGIKEFVSYVNE 236

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            + ++  ++ T   E  G     V+ A  + ++    I S+ N + T +GGTHE G + A
Sbjct: 237 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 292

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
           +TR    YA        +  ++  +D+      ++SV I E   +F GQTK+KL + +A+
Sbjct: 293 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR 352

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450
             V++ + D    YL +    +  L++  I+  + R   RK RE  R     K     L 
Sbjct: 353 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 412

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  E I  N
Sbjct: 413 GKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 472

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    + ++ ED  Y +VIIMTDAD DGAHI  LLLTFF++ M  L++  
Sbjct: 473 EEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 532

Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +F+  PPL+++ +G     +  YA  +E   K+ +E  K       + R+KGLGEM   
Sbjct: 533 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNPE 588

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET M+   RTL+RV++  ++ S K     +  LMG K   R ++I++   F
Sbjct: 589 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVQPRREWIEKHVEF 638


>gi|229104127|ref|ZP_04234801.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock3-28]
 gi|228679334|gb|EEL33537.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock3-28]
          Length = 654

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 240/651 (36%), Positives = 361/651 (55%), Gaps = 36/651 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AG+ + I V + 
Sbjct: 7   QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V+D GRG+P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 67  KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L VT+ R   I+ Q+F  G +P + LEK  K +   GT + F+PD  IF     
Sbjct: 125 NALSEWLVVTIKRDGNIYEQRFENGGVPATTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 182

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L +  +  A+L   +K     ++   E       + F++  G++ ++    E + 
Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DIFHYETGIEAFVSYLNEEKD 235

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I   +     E+ G      E A  + +     I S+ N + T +GGTHE+G + A+TR
Sbjct: 236 SIHPVV-YFTGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA       ++  ++   D+      I+SV + E   +F GQTK KL + +A+ ++
Sbjct: 292 VFNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSI 351

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453
           +  + +   ++L +NP  AT L+   ++ ++ R   RK RE  R    +K     L GKL
Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAVKAAQAREAARKAREEARSGKKKKKSEGTLSGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I
Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A+G    +++  ED+ Y+KV+IMTDAD DGAHI  LLLTFFY+ M  LIE   +F
Sbjct: 472 NTIIYAIGGGVGNEFAVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G        YA  +E    + ++  K       + R+KGLGEM A+QL 
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGK----GYMLQRYKGLGEMNANQLW 587

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV+I+         +  +  LMG K + R K+I+    F
Sbjct: 588 ETTMNPETRTLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIERNVQF 634


>gi|270290230|ref|ZP_06196455.1| DNA topoisomerase IV, B subunit [Pediococcus acidilactici 7_4]
 gi|270281011|gb|EFA26844.1| DNA topoisomerase IV, B subunit [Pediococcus acidilactici 7_4]
          Length = 677

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 249/651 (38%), Positives = 368/651 (56%), Gaps = 33/651 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            YD SSI++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DE +AGY   I V++ 
Sbjct: 4   TYDDSSIQVLEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALAGYGKEINVTIR 63

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TVVD+GRG+PV  H     K T E+I T LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 64  SDNSITVVDHGRGMPVGMHK--SGKPTAEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVV 121

Query: 163 NALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS++L V + R    + + F + G P+  L+K  K +   GT +TF+PDP IF     
Sbjct: 122 NALSEKLTVEIVRDKMKYEENFVNGGHPVGTLKKVGKTKESNGTTVTFKPDPTIFTTTV- 180

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F+   L    +  A+L   VK   + ++   E     + EE+ +  G+K +++   E++ 
Sbjct: 181 FNFNTLAVRLRESAFLLKGVKITLTDERAGHE-----QAEEYLYEEGIKEFVEYLNEDKD 235

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            + + +      K G     VE A  + +     + S+ N + T +GGTHE G+R   T+
Sbjct: 236 TLGNIM-YFDGSKHGI---EVEIAGQYNDGYSETVLSFVNNVRTKDGGTHEVGMRSGWTK 291

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              ++A       ++  ++   D+      ++S+ + E   EF GQTK KL + +A+  V
Sbjct: 292 AFNEFARKVGLLKEKDKNLEGSDVREGLSAVISIRVPEELLEFEGQTKEKLGTPEARPIV 351

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGKL 453
           E  + +    +L++N   A +L+   I   + R+  RK R+ +R    RK +     GKL
Sbjct: 352 EAVVSEQLGFFLMENGEFAQQLVRKAINARDARVAARKARDESRTGKRRKKQDRILSGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                  A   ELF+VEGDSAGGSAKQ RNR  QA+LPLRGK+LN   A  + I  N++I
Sbjct: 412 TPAQSKNAKKNELFLVEGDSAGGSAKQGRNRKFQAILPLRGKVLNTEKAKLQDIVKNEEI 471

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++  +G     +++ ED  Y+KVIIMTDAD DGAHI +LLLTFFY+ M  +I+   ++
Sbjct: 472 NTIIYTIGAGVGPEFKVEDSNYDKVIIMTDADTDGAHIQTLLLTFFYKYMRPMIDAGKIY 531

Query: 574 LISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++ +G    TK  YA  +E  +++ ++  +       + RFKGLGEM A QL 
Sbjct: 532 IALPPLYKLQKGANKKTKIEYAWTDEELEEVSKKMGR----GFSLQRFKGLGEMNADQLW 587

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+ + RTL+RV I+ D       +  +  LMG K + R K+I+   SF
Sbjct: 588 ETTMNPDTRTLVRVRIDDDT----LAERRVTTLMGDKVEPRRKWIESNVSF 634


>gi|258449316|ref|ZP_05697419.1| DNA topoisomerase IV, subunit B [Staphylococcus aureus A6224]
 gi|257857304|gb|EEV80202.1| DNA topoisomerase IV, subunit B [Staphylococcus aureus A6224]
          Length = 665

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 241/654 (36%), Positives = 362/654 (55%), Gaps = 31/654 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  +NY   SI++LEGLE VR RPGMYIG TD++ LHHL  E++DN++DEV+ GY N I+
Sbjct: 4   NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 63

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+++ +G +++ DNGRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG
Sbjct: 64  VTINKDGSISIEDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 121

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS+ L V + R  +I+ Q F  G   S    K+    K GT++TF+PD  IF  
Sbjct: 122 ASVVNALSEWLEVEIHRDGSIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 181

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L +  Q  A+L   +K   +  +   E      +E +++  G+K ++    E
Sbjct: 182 STSFNFDVLRERLQESAFLLKNLKITLNDLRSGKE-----RQEHYHYEEGIKEFVSYVNE 236

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            + ++  ++ T   E  G     V+ A  + ++    I S+ N + T +GGTHE G + A
Sbjct: 237 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 292

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
           +TR    YA        +  ++  +D+      ++SV I E   +F GQTK+KL + +A+
Sbjct: 293 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR 352

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450
             V++ + D    YL +    +  L++  I+  + R   RK RE  R     K     L 
Sbjct: 353 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 412

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  E I  N
Sbjct: 413 GKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 472

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    + ++ ED  Y +VIIMTDAD DGAHI  LLLTFF++ M  L++  
Sbjct: 473 EEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 532

Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +F+  PPL+++ +G     +  YA  +E   K+ +E  K       + R+KGLGEM   
Sbjct: 533 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNPE 588

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET M+   RTL+RV++  ++ S K     +  LMG K   R ++I++   F
Sbjct: 589 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVQPRREWIEKHVEF 638


>gi|258424795|ref|ZP_05687669.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A9635]
 gi|282916615|ref|ZP_06324373.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770421|ref|ZP_06343313.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           H19]
 gi|257844959|gb|EEV68999.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A9635]
 gi|282319102|gb|EFB49454.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460568|gb|EFC07658.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           H19]
          Length = 665

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 241/654 (36%), Positives = 362/654 (55%), Gaps = 31/654 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  +NY   SI++LEGLE VR RPGMYIG TD++ LHHL  E++DN++DEV+ GY N I+
Sbjct: 4   NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 63

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+++ +G +++ DNGRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG
Sbjct: 64  VTINKDGSISIEDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 121

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS+ L V + R   I+ Q F  G   S    K+    K GT++TF+PD  IF  
Sbjct: 122 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 181

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L +  Q  A+L   +K   +  +   E      +E +++  G+K ++    E
Sbjct: 182 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKE-----RQEHYHYEEGIKEFVSYVNE 236

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            + ++  ++ T   E  G     V+ A  + ++    I S+ N + T +GGTHE G + A
Sbjct: 237 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 292

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
           +TR    YA        +  ++  +D+      ++SV I E   +F GQTK+KL + +A+
Sbjct: 293 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR 352

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450
             V++ + D    YL +    +  L++  I+  + R   RK RE  R     K     L 
Sbjct: 353 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 412

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  E I  N
Sbjct: 413 GKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 472

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    + ++ ED  Y +VIIMTDAD DGAHI  LLLTFF++ M  L++  
Sbjct: 473 EEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 532

Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +F+  PPL+++ +G     +  YA  +E   K+ +E  K       + R+KGLGEM   
Sbjct: 533 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNPE 588

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET M+ + RTL+RV++  ++ S K     +  LMG K   R ++I++   F
Sbjct: 589 QLWETTMNPDTRTLIRVQVEDEVRSSKR----VTTLMGDKVQPRREWIEKHVEF 638


>gi|83942882|ref|ZP_00955342.1| DNA topoisomerase IV, B subunit [Sulfitobacter sp. EE-36]
 gi|83845890|gb|EAP83767.1| DNA topoisomerase IV, B subunit [Sulfitobacter sp. EE-36]
          Length = 653

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 344/654 (52%), Positives = 448/654 (68%), Gaps = 10/654 (1%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              QS +  YDASSI++LE +E VR+RPGMYIGG D++ALHH+ +E+IDN+MDE +AG+A
Sbjct: 6   SGAQSNAKEYDASSIQVLEDMEHVRLRPGMYIGGKDDRALHHMVAEIIDNSMDEAVAGHA 65

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             IE+ L  NG +TV DNGRGIP + HPK P+KS LEII  TL+AGGKF   +YE SGGL
Sbjct: 66  TWIELELHENGHVTVRDNGRGIPTDPHPKDPSKSALEIIFCTLNAGGKFSGDSYETSGGL 125

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALSD L V VAR   +F+ +FSRGIP   LEK     N+RGT +TF PD +
Sbjct: 126 HGVGSSVVNALSDHLRVEVARNRELFAMEFSRGIPQGKLEKIGAAPNRRGTAVTFHPDAE 185

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IFG       ARL  M +SKAYL   V+  W C     +    P++  F+FPGGL  YL 
Sbjct: 186 IFGP-LKLKPARLFAMARSKAYLFSGVEIRWKC---GQQDGDTPQEATFHFPGGLSDYLN 241

Query: 275 TKLENRSLISSEIFTGKTE--KKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHE 331
             L+  +  +   F G  +  +K    G VEWAI W    +  I SYCNTI T EGGTHE
Sbjct: 242 ETLKGSTTYAEHPFGGTVDFREKFNAPGKVEWAINWTPSRDGFIQSYCNTIPTPEGGTHE 301

Query: 332 SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           +G   A+ +G+K Y EL  NK+A +I  DDL+     ++S FIREPEF GQTK +L ++D
Sbjct: 302 AGFWSAILKGVKAYGELVGNKKAGTITRDDLITGGCALVSCFIREPEFVGQTKDRLATVD 361

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           AQR VENA+RD FD++L  +   A  +L++++ R+EERLRRR+++E  RKTA +KLRLPG
Sbjct: 362 AQRMVENAVRDHFDNWLAADTKSAGAILDFLVLRAEERLRRRQEKETARKTATKKLRLPG 421

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL DC+     GTELFIVEGDSAGGS K ARNR+ QA+LPL+GKILNV  A S K+  N 
Sbjct: 422 KLTDCTSKTREGTELFIVEGDSAGGSGKGARNRNTQALLPLKGKILNVLGAASSKLNTNA 481

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I DL +ALG    +++  +DLRY+K+IIMTDADVDGAHIA+LL+TFFY +M  +I+  H
Sbjct: 482 EINDLCEALGVGMGTKFNLDDLRYDKIIIMTDADVDGAHIAALLMTFFYTQMRPMIDAGH 541

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           L+L  PPL+R+TQG K VY  D+  K   LE+    GKGKI++ RFKGLGEM A  LKET
Sbjct: 542 LYLACPPLYRLTQGAKRVYVADDAEKDMWLEK-GLGGKGKIDLQRFKGLGEMDAKDLKET 600

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD   R L+RV +++D+    +T D + +LMG K + R+++IQE A F++++ 
Sbjct: 601 TMDPTTRKLIRVTVDEDM--PGETGDLVERLMGKKPELRYQYIQENAQFVEELD 652


>gi|281421058|ref|ZP_06252057.1| DNA gyrase, B subunit [Prevotella copri DSM 18205]
 gi|281404976|gb|EFB35656.1| DNA gyrase, B subunit [Prevotella copri DSM 18205]
          Length = 656

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 254/654 (38%), Positives = 383/654 (58%), Gaps = 29/654 (4%)

Query: 49  IRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLT 108
           I++LEGLE VR RP MYIG   EK LHHL +E +DN++DE +AGY   IEV+++ +  +T
Sbjct: 16  IQVLEGLEAVRKRPAMYIGDISEKGLHHLVNETVDNSIDEAMAGYCTDIEVTINEDNSIT 75

Query: 109 VVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDE 168
           V DNGRGIPV+ H K    S LE+++T LHAGGKFD  +Y++SGGLHGVG+S VNALS  
Sbjct: 76  VEDNGRGIPVDMHEKLHK-SALEVVMTVLHAGGKFDKGSYKVSGGLHGVGVSCVNALSTH 134

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           +   V R   I+ Q++ +G PL P++   +    RGTR  F PDP IF     +    + 
Sbjct: 135 MLSQVFRGGKIYQQEYEKGKPLYPVKVVGETNK-RGTRQQFWPDPTIFTHTV-YKWDIIA 192

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
              +  A+L+  +K      +   ++ G  +++ F+   GLK +++    +R+ +  ++ 
Sbjct: 193 NRMRELAFLNAGIKITLRDLR--PDEEGKTKEQVFHAKDGLKEFVRYVDRHRTHLFDDVI 250

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
             KTEK+G     +E A+ +  +    I SY N I T EGGTH +G R+ALTR +K YAE
Sbjct: 251 YLKTEKQGIP---IEIAVMYNTDYSENIHSYVNNINTIEGGTHLTGFRMALTRTLKAYAE 307

Query: 348 ------LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
                     K  + I  +D       ++S+ + EP+F GQTKTKL + + Q  V+ A+ 
Sbjct: 308 ADPTISKQIEKAKVEIAPEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVQGAVQQAVN 367

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNI 460
           +    YL ++P EA ++ E V+  +  R+  RK RE  ++   +    LPGKLADCS   
Sbjct: 368 EALSDYLEEHPDEAKRICEKVVLAATARIAARKARESVQRKNFMTGGGLPGKLADCSMKD 427

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
               E+F+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV      K+   + +M+++Q++
Sbjct: 428 PKECEIFLVEGDSAGGSAKQGRDRFRQAILPLRGKILNVEKVQWHKVFEAESVMNIIQSI 487

Query: 521 GCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           G R         +   + LRY+K+IIMTDADVDG+HI +L++T FY+ M  +IE+ HL++
Sbjct: 488 GVRFGVDGEDSKEANTDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRFMPKVIEEGHLYI 547

Query: 575 ISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKH-GKGKIEISRFKGLGEMLASQLKETA 632
            +PPL++ T +   S Y + E+ +Q  ++++        I   R+KGLGEM   QL ET 
Sbjct: 548 ATPPLYKCTYRSKVSEYCYTEQQRQAFIDKYGDGVEDKNIHTQRYKGLGEMNPEQLWETT 607

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           MD + R L +V I     +     +  + LMG   + R +FI++ A++  ++  
Sbjct: 608 MDPSTRLLKQVTIE----NAAQADEIFSMLMGDDVEPRREFIEQNATYA-NIDA 656


>gi|319947116|ref|ZP_08021350.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus australis
           ATCC 700641]
 gi|319747164|gb|EFV99423.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus australis
           ATCC 700641]
          Length = 649

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 238/653 (36%), Positives = 365/653 (55%), Gaps = 34/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGNGLHHLVWEIVDNAVDEALSGFGSQIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G L+V D GRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLSVADQGRGMPTGMH--AMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F   G P++ LEK     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLEKIGSAPKSKTGTKVTFMPDATIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   V    +  ++  +         F++  G++ +++   E+
Sbjct: 186 TDFKFNTIAERIKESAFLLKDVTLTLTDLRKEEDN-----HVAFHYENGVQDFVEYLNED 240

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++        E +G     VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 241 KETLTPV-LYFNGESEG---FQVEVALQYNDGYSDNILSFVNNVRTKDGGTHETGLKTAI 296

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 297 TKAMNDYARKTGLLKEKDKNLEGSDYREGLSAVLSILVPEAHLQFEGQTKDKLGSPLARP 356

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 357 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 416

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL       A   EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N+
Sbjct: 417 KLTPAQSKNAAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKANMSDILKNE 476

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E   
Sbjct: 477 EINTMIYTIGAGVGADFTIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 536

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +      LE+ ++       + R+KGLGEM A Q
Sbjct: 537 VYIAMPPLYKMSKGKGKKEEVAYAWTDSE----LEDLRRTFGRGATLQRYKGLGEMNADQ 592

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I+     L   +  ++ LMG KA  R ++I++   F
Sbjct: 593 LWETTMNPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 641


>gi|295394842|ref|ZP_06805055.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294972175|gb|EFG48037.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 664

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 249/662 (37%), Positives = 366/662 (55%), Gaps = 27/662 (4%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YDA  I +LEGLE VR RPGMYIG T E+ LHHL  E++DNA+DE +AG+ + I V++  
Sbjct: 9   YDADDITVLEGLEAVRKRPGMYIGSTSERGLHHLVYEIVDNAVDEALAGFNDRIHVTILA 68

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G + V D GRGIPV  H       TL+++LT LHAGGKF    Y +SGGLHGVG SVVN
Sbjct: 69  DGGVRVEDRGRGIPVAIHS-TEKVPTLQVVLTILHAGGKFGGGGYAVSGGLHGVGSSVVN 127

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS  +   V R   ++ Q + RG+P   + K  +  +  GT ITF PD +IF     F+
Sbjct: 128 ALSKRMDAEVHRDGFVWRQSYERGVPTGEVTK-GEAADHTGTIITFWPDEEIFDT-VQFN 185

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDK-----------EIAEKYGIPEKEEFYFPGGLKTY 272
              L    Q  A+L+  +      ++           E  E+   P +  F +  GL  Y
Sbjct: 186 FETLRARFQQMAFLNKGLSITLRDERAEQVNDDDVQLEEQEEEFKPREVTFKYDNGLFDY 245

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHR-GTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++     +            E + T     +E A+ W       + +Y NTI T EGGTH
Sbjct: 246 VKYLNSTKKSEPVHEDIISFEAEDTEETIALEVAMQWTSSYAESVHTYANTINTHEGGTH 305

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           E G R+ALT  I  YA   +   ++  ++  DD+      ++S+ + EP+F GQTKTKL 
Sbjct: 306 EEGFRIALTNLINAYAREQKLLKEKDTNLTGDDVREGLTAVISIKLGEPQFEGQTKTKLG 365

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKL 447
           + +A+  V+  +RD   H+L  NP++A +++   I+ S+ R+  RK RE  R+ + +   
Sbjct: 366 NSEARGFVQRVVRDHLGHWLESNPMQAKEVVRKAIQASQARMAARKAREATRRKSLLESS 425

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKL DC       +E+FIVEGDSAGGSA Q R+   QA+LPLRGKILNV  A  ++ 
Sbjct: 426 GLPGKLKDCQSKDPSISEVFIVEGDSAGGSAVQGRDPLTQAILPLRGKILNVEKARLDRA 485

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
            +N ++  ++ A G     ++  E LRY K+++M DADVDG HI +LLLT  ++ M  LI
Sbjct: 486 LSNLEVQSMITAFGTGIGDEFDIEKLRYHKIVLMADADVDGQHITTLLLTLIFRYMKPLI 545

Query: 568 EQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEM 623
           E+ H++L +PPL+RI        +A+ +  +  +L + + +GK   +   I R+KGLGEM
Sbjct: 546 ERGHVYLATPPLYRIKWSNAADEFAYTDRERDALLTDGRANGKRLPKELGIQRYKGLGEM 605

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
              +L ET M+ + R L +V ++  +       +  + LMG   D R +FIQE A  +  
Sbjct: 606 NYHELWETTMNPDHRLLKQVTLDDAMV----ADEIFSVLMGDDVDSRKRFIQENAKDVRF 661

Query: 684 VG 685
           + 
Sbjct: 662 LD 663


>gi|32448562|gb|AAO16798.1| ParE [Streptococcus pneumoniae]
          Length = 638

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 239/652 (36%), Positives = 362/652 (55%), Gaps = 36/652 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V+++
Sbjct: 1   NYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTIN 60

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G LTV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 61  KDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 118

Query: 163 NALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           N  S  L V + R   I+ Q+F   G P++ L+K     ++K GT++TF PD  IF    
Sbjct: 119 NLSSSWLEVEITRDGAIYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDAGIFST-T 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    + +     A+L   V    +  +         E  EF++  G++ ++    E++
Sbjct: 178 DFKYNTISERLNESAFLLKNVTLSLTDKR-------TDESVEFHYENGVQDFVSYLNEDK 230

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             ++      + E  G     VE A+ + +   +   S+ N + T +GGTHE+GL+ A+T
Sbjct: 231 ETLTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 286

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQRT 395
           + +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+  
Sbjct: 287 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 346

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPGK 452
           V+  + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L GK
Sbjct: 347 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 406

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N++
Sbjct: 407 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 466

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H+
Sbjct: 467 INTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHV 526

Query: 573 FLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           ++  PPL+++++G     +  YA  +   +++ ++F K       + R+KGLGEM A QL
Sbjct: 527 YIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQL 582

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 583 WETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 630


>gi|82750947|ref|YP_416688.1| DNA topoisomerase IV subunit B [Staphylococcus aureus RF122]
 gi|82656478|emb|CAI80900.1| topoisomerase IV subunit B [Staphylococcus aureus RF122]
          Length = 665

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 242/654 (37%), Positives = 362/654 (55%), Gaps = 31/654 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  +NY   SI++LEGLE VR RPGMYIG TD++ LHHL  E++DN++DEV+ GY N I+
Sbjct: 4   NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 63

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+++ +G +++ DNGRG+P   H     K T+E+I T LHAGGKF  S Y+ SGGLHGVG
Sbjct: 64  VTINKDGSISIEDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQSGYKTSGGLHGVG 121

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS+ L V + R   I+ Q F  G   S    K+    K GT++TF+PD  IF  
Sbjct: 122 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 181

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L +  Q  A+L   +K   +  +   E      +E +++  G+K ++    E
Sbjct: 182 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKE-----RQEHYHYEEGIKEFVGYVNE 236

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            + ++  ++ T   E  G     V+ A  + ++    I S+ N + T +GGTHE G + A
Sbjct: 237 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 292

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
           +TR    YA        +  ++  +D+      ++S+ I E   +F GQTK+KL + +A+
Sbjct: 293 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSIRIPEELLQFEGQTKSKLGTSEAR 352

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450
             V++ + D    YL +    +  L++  I+  + R   RK RE  R     K     L 
Sbjct: 353 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 412

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  E I  N
Sbjct: 413 GKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 472

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    + ++ ED  Y +VIIMTDAD DGAHI  LLLTFF++ M  L++  
Sbjct: 473 EEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 532

Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +F+  PPL+++ +G     +  YA  +E   K+ +E  K       + R+KGLGEM   
Sbjct: 533 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNPE 588

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET M+   RTL+RV++  +L S K     +  LMG K   R ++I++   F
Sbjct: 589 QLWETTMNPETRTLIRVQVEDELRSSKR----VTTLMGDKVQPRREWIEKHVEF 638


>gi|304384956|ref|ZP_07367302.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Pediococcus acidilactici
           DSM 20284]
 gi|304329150|gb|EFL96370.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Pediococcus acidilactici
           DSM 20284]
          Length = 681

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 249/651 (38%), Positives = 368/651 (56%), Gaps = 33/651 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            YD SSI++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DE +AGY   I V++ 
Sbjct: 8   TYDDSSIQVLEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALAGYGKEINVTIR 67

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TVVD+GRG+PV  H     K T E+I T LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 68  SDNSITVVDHGRGMPVGMHK--SGKPTAEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVV 125

Query: 163 NALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS++L V + R    + + F + G P+  L+K  K +   GT +TF+PDP IF     
Sbjct: 126 NALSEKLTVEIVRDKMKYEENFVNGGHPVGTLKKVGKTKESNGTTVTFKPDPTIFTTTV- 184

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F+   L    +  A+L   VK   + ++   E     + EE+ +  G+K +++   E++ 
Sbjct: 185 FNFNTLAVRLRESAFLLKGVKITLTDERAGHE-----QAEEYLYEEGIKEFVEYLNEDKD 239

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            + + +      K G     VE A  + +     + S+ N + T +GGTHE G+R   T+
Sbjct: 240 TLGNIM-YFDGSKHGI---EVEIAGQYNDGYSETVLSFVNNVRTKDGGTHEVGMRSGWTK 295

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              ++A       ++  ++   D+      ++S+ + E   EF GQTK KL + +A+  V
Sbjct: 296 AFNEFARKVGLLKEKDKNLEGSDVREGLSAVISIRVPEELLEFEGQTKEKLGTPEARPIV 355

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGKL 453
           E  + +    +L++N   A +L+   I   + R+  RK R+ +R    RK +     GKL
Sbjct: 356 EAVVSEQLGFFLMENGEFAQQLVRKAINARDARVAARKARDESRTGKRRKKQDRILSGKL 415

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                  A   ELF+VEGDSAGGSAKQ RNR  QA+LPLRGK+LN   A  + I  N++I
Sbjct: 416 TPAQSKNAKKNELFLVEGDSAGGSAKQGRNRKFQAILPLRGKVLNTEKAKLQDIVKNEEI 475

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++  +G     +++ ED  Y+KVIIMTDAD DGAHI +LLLTFFY+ M  +I+   ++
Sbjct: 476 NTIIYTIGAGVGPEFKVEDSNYDKVIIMTDADTDGAHIQTLLLTFFYKYMRPMIDAGKIY 535

Query: 574 LISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++ +G    TK  YA  +E  +++ ++  +       + RFKGLGEM A QL 
Sbjct: 536 IALPPLYKLQKGANKKTKIEYAWTDEELEEVSKKMGR----GFSLQRFKGLGEMNADQLW 591

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+ + RTL+RV I+ D       +  +  LMG K + R K+I+   SF
Sbjct: 592 ETTMNPDTRTLVRVRIDDDT----LAERRVTTLMGDKVEPRRKWIESNVSF 638


>gi|90961848|ref|YP_535764.1| DNA topoisomerase IV subunit B [Lactobacillus salivarius UCC118]
 gi|90821042|gb|ABD99681.1| Topoisomerase IV subunit B [Lactobacillus salivarius UCC118]
          Length = 673

 Score =  596 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 244/654 (37%), Positives = 363/654 (55%), Gaps = 33/654 (5%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
             +NY+  SI++L+GLE VR RPGMYIG TD + LHHL  E+ DNA+DE ++GY   I V
Sbjct: 2   PKNNYNDDSIQVLKGLEAVRKRPGMYIGSTDSRGLHHLVYEIFDNAVDEALSGYGKEINV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            +  +  +TVVDNGRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHGVG 
Sbjct: 62  IIHKDDSITVVDNGRGMPVGMHSM--GIPTVEVIFTVLHAGGKFGQGDYKTSGGLHGVGA 119

Query: 160 SVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           SVVNALS +L V   R    + + F + G P+  L K  K + K GT++TF+PD  IF  
Sbjct: 120 SVVNALSSKLTVNTVRDGIEYEEDFVNGGQPVGTLRKIGKAKRKSGTKVTFKPDANIFST 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              ++   L +  +  A+L   VK   + ++          +EEF +  G+K +++   E
Sbjct: 180 T-KYNFNTLAERLRESAFLLKGVKITLTDER-----TDPYTEEEFLYAEGIKEFVEYLNE 233

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           ++ ++   +   + +K G     VE A  + +     I S+ N + T +GGTHE+G++ A
Sbjct: 234 DKDVLGPVM-YFEGKKDGI---EVEVAGQYNDGYSETIMSFVNNVRTKDGGTHEAGMKAA 289

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
            T+   +YA        +  ++   D+      ++SV I E   +F GQTK KL + +A+
Sbjct: 290 WTKAFNEYARKINLLKDKDKNLEGSDVREGLSAVVSVRIPEELLQFEGQTKGKLGTPEAR 349

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LP 450
           + V++ + +   ++L++N   A +L+   I+  E R   RK R+ +R    R+     L 
Sbjct: 350 QIVDSVVNEQLGYFLMENGDFAQELVRKSIKAREAREAARKARDESRNGKKRRKSERLLS 409

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL       A   ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + I  N
Sbjct: 410 GKLTPAQSKNAKRNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIMKN 469

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    +++   D  Y+KVIIMTDAD DGAHI +LLLTFFY+ M  +I   
Sbjct: 470 EEINTMIYTIGAGVGAEFNINDANYDKVIIMTDADTDGAHIQTLLLTFFYKYMRPMINAG 529

Query: 571 HLFLISPPLFRI----TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +++  PPL++I     +     YA  +   +   +E KK       + R+KGLGEM A 
Sbjct: 530 RVYIALPPLYKIEKTVKKKRVIKYAWTDAELESATKELKK----GYTLQRYKGLGEMNAD 585

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET M+   RTL+RV I+ D       +  +  LMG K + R K+I++   F
Sbjct: 586 QLWETTMNPETRTLVRVRIDDDT----IAEKRVTTLMGDKVEPRRKWIEKNVKF 635


>gi|229061161|ref|ZP_04198511.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH603]
 gi|228718032|gb|EEL69672.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH603]
          Length = 653

 Score =  596 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 241/651 (37%), Positives = 360/651 (55%), Gaps = 36/651 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AG+ + I V + 
Sbjct: 6   QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 65

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V+D GRG+P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 66  KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 123

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L VT+ R  +I+ Q+F  G  P + LEK  K +   GT + F+PD  IF     
Sbjct: 124 NALSEWLVVTIKRDGSIYEQRFENGGTPATTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 181

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L +  +  A+L   +K     ++   E       + F++  G++ ++    E + 
Sbjct: 182 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DVFHYETGIEAFVSYLNEEKD 234

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I   +     E+ G      E A  + +     I S+ N + T +GGTHE+G + A+TR
Sbjct: 235 SIHPVV-YFSGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 290

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA       ++  ++   D+      I+SV + E   +F GQTK KL + +A+ ++
Sbjct: 291 VFNEYARKVSLLKEKDKNLEGTDIREGLASIVSVRVPEDVLQFEGQTKGKLGTSEARSSI 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453
           +  + +   ++L +NP  AT L+   I+ ++ R   RK RE  R    +K     L GKL
Sbjct: 351 DAIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKL 410

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I
Sbjct: 411 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 470

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A+G    +++  ED+ Y+KV+IMTDAD DGAHI  LLLTFFY+ M  LIE   +F
Sbjct: 471 NTIIYAIGGGVGNEFAVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 530

Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G        YA  +E    + ++  K       + R+KGLGEM A QL 
Sbjct: 531 IALPPLYKVSKGKGKSEVIEYAWSDEELGSVTKKVGK----GYMLQRYKGLGEMNADQLW 586

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV+I+         +  +  LMG K + R K+I+    F
Sbjct: 587 ETTMNPETRTLIRVKIDDASR----AERRVTTLMGDKVEPRRKWIERNVQF 633


>gi|73916468|gb|AAZ93102.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
          Length = 647

 Score =  596 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 239/653 (36%), Positives = 365/653 (55%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V    +  +         E  E ++  G++ ++    E+
Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIELHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           + +++      + E  G     VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +++ ++F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|152975974|ref|YP_001375491.1| DNA topoisomerase IV subunit B [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152024726|gb|ABS22496.1| DNA topoisomerase IV, B subunit [Bacillus cytotoxicus NVH 391-98]
          Length = 654

 Score =  596 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 240/651 (36%), Positives = 361/651 (55%), Gaps = 36/651 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AG+ + I V + 
Sbjct: 7   QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVIIH 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V+D GRG+P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 67  KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTILHAGGKFGQGGYKTSGGLHGVGASVV 124

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L VT+ R   I+ Q+F  G IP++ LEK  K +   GT + F+PD  IF     
Sbjct: 125 NALSEWLVVTIKRDGNIYEQRFENGGIPVTTLEKIGKTKE-SGTTMHFKPDSSIFSTTN- 182

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L +  +  A+L   +K     ++   E       + F++  G++ ++    E + 
Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DVFHYETGIEAFVSYLNEEKD 235

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I   +     E+ G      E A  + +     I S+ N + T +GGTHE+G + A+TR
Sbjct: 236 AIHPVV-YFSGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA       ++  ++   D+      ++SV + E   +F GQTK KL + +A+ ++
Sbjct: 292 VFNEYARKVSLLKEKDKNLEGTDIREGLAAVVSVRVPEELLQFEGQTKGKLGTSEARSSI 351

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKL 453
           +  + +   ++L + P  AT L++  I+ ++ R   RK RE  R    +K     L GKL
Sbjct: 352 DAIVSEHLAYFLEETPDVATLLVKKAIKAAQAREAARKAREEARTGKKKKRSEGTLSGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I
Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A+G    +++  ED+ Y+KV+IMTDAD DGAHI  LLLTFFY+ M  LIE   +F
Sbjct: 472 NTIIYAIGGGVGNEFSIEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKSLIEAGKVF 531

Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G        YA  +E    + ++  K       + R+KGLGEM A QL 
Sbjct: 532 IALPPLYKVSKGKGKNEVIEYAWSDEELASVTKKVGK----GYILQRYKGLGEMNADQLW 587

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV+I+         +  +  LMG K + R K+I+    F
Sbjct: 588 ETTMNPETRTLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIERNVQF 634


>gi|331703026|ref|YP_004399713.1| DNA Gyrase Subunit B [Mycoplasma mycoides subsp. capri LC str.
           95010]
 gi|328801581|emb|CBW53734.1| DNA Gyrase Subunit B [Mycoplasma mycoides subsp. capri LC str.
           95010]
          Length = 634

 Score =  596 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 256/649 (39%), Positives = 381/649 (58%), Gaps = 21/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S  Y A SI++L+GLE VR RPGMYIG T +  LHHL  E++DN++DE +AGYA+LI V+
Sbjct: 2   SQEYSAESIKVLKGLEAVRTRPGMYIGSTSKTGLHHLVWEILDNSIDEAMAGYADLINVT 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +     + V DNGRGIPV  +     KS L ++ T LHAGGKFD+ +Y+ISGGLHGVG S
Sbjct: 62  ITKENEVIVQDNGRGIPVGINS-DTKKSALSLVFTQLHAGGKFDSESYKISGGLHGVGAS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  + V V R N  + Q FS+G       ++    + RGT++ F+PDP+IF +  
Sbjct: 121 VVNALSLYVEVEVYRNNIHYHQLFSKGGTKESELQQLGHTDLRGTKVKFKPDPEIFKETV 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   +    +  A+L+  +K   + ++       I +  E+ F  G+  Y++ K E +
Sbjct: 181 VFDYEIIKNKVKQLAFLNKGLKITLTDER-------IEKTVEYLFLNGILDYIKEKNETK 233

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + I+  IF   ++ +      VE A+ +  +    I ++ N I T EGGTHE GL+ AL 
Sbjct: 234 NKINPNIFYVDSKYEDI---EVEMALQYNSDYQENIITFVNNINTHEGGTHEDGLKQALI 290

Query: 340 RGIKKYAE--LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I +YA+  +  NK       DD+    + ILSV   +P++ GQTKTKL + DA+  V 
Sbjct: 291 RDINRYADTVIKNNKTPSKFSWDDIKEGMMCILSVRHTDPQYEGQTKTKLSNPDAKEAVN 350

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADC 456
             + + F+ +L+++P +A  +L+  +   + R+  +K RE   RK+A+    LPGKLADC
Sbjct: 351 IIIGNAFEEFLLKSPEDAKAILDKNVNAQKARIAAQKAREETRRKSALDSFSLPGKLADC 410

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
               +   EL++VEGDSAGGSAK  RNR  QA+LPLRGK+LNV      +  +N +I  +
Sbjct: 411 ETKDSSIAELYLVEGDSAGGSAKTGRNRKFQAILPLRGKVLNVERVTEARAFSNNEIKSI 470

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G   + +     LRY+K++IMTDADVDGAHI +LLLTFFY+ M  L+   H+++  
Sbjct: 471 ITAVGTGIKEELDLSKLRYKKIVIMTDADVDGAHIRTLLLTFFYRYMKPLVANGHIYIAQ 530

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL++I  G K  YA+ +    ++     +    K  I R+KGLGEM   QL ET MD  
Sbjct: 531 PPLYKIEAGKKIAYAYTDSQLDELKN--NEFNNLKYTIQRYKGLGEMDPLQLWETTMDPQ 588

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +RT+L++ +           +  + LMG   + R  +IQ+ A F++++ 
Sbjct: 589 QRTMLQISLEDAT----LANEVFSDLMGEDPELRKIYIQDNAKFVENID 633


>gi|262282828|ref|ZP_06060595.1| DNA topoisomerase IV subunit B [Streptococcus sp. 2_1_36FAA]
 gi|262261080|gb|EEY79779.1| DNA topoisomerase IV subunit B [Streptococcus sp. 2_1_36FAA]
          Length = 647

 Score =  596 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 241/653 (36%), Positives = 369/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVSDHGRGMPVGMH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R  T++ Q+F   G P++ L+K     ++K GT++TF P+  IF   
Sbjct: 127 VNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMPNDTIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   V+   + ++         EK EF++  G++ ++    E+
Sbjct: 186 TDFKYNTIAERLKESAFLLKNVRLSLTDER-------TGEKVEFHYENGVEDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++      + E+ G     V+ A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KETLTPV-LYFEGEESG---FQVQVALQYNDGYSDNILSFVNNVRTKDGGTHETGLKTAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKAMNDYARKTGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V++ + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 AVDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    S +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E   
Sbjct: 475 EINTMIYTIGAGVGSDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534

Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G        YA  +   + +  +F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKNEVVEYAWTDGELEDLRRKFGKGAM----LQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|304373045|ref|YP_003856254.1| DNA gyrase subunit B [Mycoplasma hyorhinis HUB-1]
 gi|304309236|gb|ADM21716.1| DNA gyrase subunit B [Mycoplasma hyorhinis HUB-1]
 gi|330723339|gb|AEC45709.1| DNA gyrase subunit B [Mycoplasma hyorhinis MCLD]
          Length = 640

 Score =  596 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 254/653 (38%), Positives = 364/653 (55%), Gaps = 22/653 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           ++ NY+A SI+ LEGLEPVR RPGMYIGGT    LHHL  E++DNA+DE +AG+AN I V
Sbjct: 2   SNQNYEAESIQTLEGLEPVRKRPGMYIGGTGILPLHHLIWEIVDNAVDEALAGFANTITV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            +  +G++ V DNGRGIPV  HPK  N S  E++LT LHAGGKFD S+Y++SGGLHGVG 
Sbjct: 62  EITTDGYVKVSDNGRGIPVGIHPKH-NVSAAEVVLTVLHAGGKFDGSSYKVSGGLHGVGA 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV--RNKRGTRITFRPDPKIFG 217
           SVVNALS  L V + R   ++ Q+F  G       K          GT I F+PD  I  
Sbjct: 121 SVVNALSANLKVWIKRDGKLYFQEFVDGGKKIDDLKVIDTVPDFSTGTTIMFKPDFTIME 180

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F    +L   +  AYL+  +K      +   EK        F F GG+  Y+    
Sbjct: 181 VN-DFRLDIILDRLKQTAYLTKNLKFIVKDQRNNFEKE-------FLFAGGIIDYVSELT 232

Query: 278 ENRSLISSEIFTGKTE-KKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLR 335
           +    +   I   + E     +    E A+ +  E+  E+ +Y N I   EGGTHE+GL 
Sbjct: 233 KGSEKVHDNIIYSEGEISTDQYHTKAEIALQYVKEDRSEVLAYTNNIYNREGGTHETGLF 292

Query: 336 VALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            AL+R +  YA   +  +        +D+      ++S+    P F GQTK KL + + +
Sbjct: 293 DALSRILNNYALENKFFKSDQEKFSREDIKDGMYVVVSIKHSNPIFEGQTKGKLNNKEVR 352

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
             V     + F+ +L +NP +A K++E  +   + R      RE + RK+      LPGK
Sbjct: 353 SVVNKIFSEVFERFLAENPDQARKIIERNLLSQKARKAAESAREAIKRKSPFEINSLPGK 412

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC+   A  +EL+IVEG+SAGGSAK  R+R  QA+LPLRGK++N      EK+  N++
Sbjct: 413 LADCTTKDAQISELYIVEGNSAGGSAKMGRDRHFQAILPLRGKVINSQKTNFEKVLKNEE 472

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I+ L+ A G    +++    +RY K+IIMTDAD DG+HI +LLLTF Y+    LIE   +
Sbjct: 473 ILSLITAFGTGIGAEFNINKIRYYKIIIMTDADSDGSHIRTLLLTFLYRFFKPLIEYGFV 532

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL++I+   K VYA+ ++ K++I+E+  +    K+ I R+KGLGEM   QL ET 
Sbjct: 533 YIAQPPLYKISANKKVVYAYSDKQKEQIIEQ--EFSNQKVSIQRYKGLGEMNPDQLWETT 590

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           MD   R +++V+I   +           +LMGT    R  FI+E A +  ++ 
Sbjct: 591 MDPKTRKMIQVQIQDAI----IASQVFEELMGTDVAPRKLFIEENAKYAKNLD 639


>gi|163941204|ref|YP_001646088.1| DNA topoisomerase IV subunit B [Bacillus weihenstephanensis KBAB4]
 gi|163863401|gb|ABY44460.1| DNA topoisomerase IV, B subunit [Bacillus weihenstephanensis KBAB4]
          Length = 654

 Score =  596 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 241/651 (37%), Positives = 360/651 (55%), Gaps = 36/651 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AG+ + I V + 
Sbjct: 7   QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V+D GRG+P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 67  KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L VT+ R  +I+ Q+F  G  P + LEK  K +   GT + F+PD  IF     
Sbjct: 125 NALSEWLVVTIKRDGSIYEQRFENGGTPATTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 182

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L +  +  A+L   +K     ++   E       + F++  G++ ++    E + 
Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DVFHYETGIEAFVSYLNEEKD 235

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I   +     E+ G      E A  + +     I S+ N + T +GGTHE+G + A+TR
Sbjct: 236 SIHPVV-YFSGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA       ++  ++   D+      I+SV + E   +F GQTK KL + +A+ ++
Sbjct: 292 VFNEYARKVSLLKEKDKNLEGTDIREGLASIVSVRVPEDVLQFEGQTKGKLGTSEARSSI 351

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453
           +  + +   ++L +NP  AT L+   I+ ++ R   RK RE  R    +K     L GKL
Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I
Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A+G    +++  ED+ Y+KV+IMTDAD DGAHI  LLLTFFY+ M  LIE   +F
Sbjct: 472 NTIIYAIGGGVGNEFAVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G        YA  +E    + ++  K       + R+KGLGEM A QL 
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELGGVTKKVGK----GYMLQRYKGLGEMNADQLW 587

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV+I+         +  +  LMG K + R K+I+    F
Sbjct: 588 ETTMNPETRTLIRVKIDDASR----AERRVTTLMGDKVEPRRKWIERNVQF 634


>gi|300214581|gb|ADJ78997.1| Topoisomerase IV subunit B [Lactobacillus salivarius CECT 5713]
          Length = 673

 Score =  596 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 244/654 (37%), Positives = 364/654 (55%), Gaps = 33/654 (5%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
             +NY+  SI++L+GLE VR RPGMYIG TD + LHHL  E+ DNA+DE ++GY   I V
Sbjct: 2   PKNNYNDDSIQVLKGLEAVRKRPGMYIGSTDSRGLHHLVYEIFDNAVDEALSGYGKEINV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            +  +  +TVVDNGRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHGVG 
Sbjct: 62  IIHKDDSITVVDNGRGMPVGMHSM--GIPTVEVIFTVLHAGGKFGQGDYKTSGGLHGVGA 119

Query: 160 SVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           SVVNALS +L V   R    + + F + G P+  L K  K + K GT++TF+PD  IF  
Sbjct: 120 SVVNALSSKLTVNTVRDGIEYEEDFVNGGQPVGTLRKIGKAKRKSGTKVTFKPDANIFST 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              ++   L +  +  A+L   VK   + ++          +EEF +  G+K +++   E
Sbjct: 180 T-KYNFNTLAERLRESAFLLKGVKITLTDER-----TDPYTEEEFLYAEGIKEFVEYLNE 233

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           ++ ++   +   + +K G     VE A  + +     I S+ N + T +GGTHE+G++ A
Sbjct: 234 DKDVLGPVM-YFEGKKDGI---EVEVAGQYNDGYSETIMSFVNNVRTKDGGTHEAGMKAA 289

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
            T+   +YA        +  ++   D+      ++SV I E   +F GQTK KL + +A+
Sbjct: 290 WTKAFNEYARKINLLKDKDKNLEGSDVREGLSAVVSVRIPEELLQFEGQTKGKLGTPEAR 349

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LP 450
           + V++ + +   ++L++N   A +L+   I+  E R   RK R+ +R    R+     L 
Sbjct: 350 QIVDSVVNEQLGYFLMENGDFAQELVRKSIKAREAREAARKARDESRNGKKRRKSERLLS 409

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL       A   ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + I  N
Sbjct: 410 GKLTPAQSKNAKRNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIMKN 469

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    +++  +D  Y+KVIIMTDAD DGAHI +LLLTFFY+ M  +I   
Sbjct: 470 EEINTMIYTIGAGVGAEFNIDDANYDKVIIMTDADTDGAHIQTLLLTFFYKYMRPMINAG 529

Query: 571 HLFLISPPLFRI----TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +++  PPL++I     +     YA  +   +   +E KK       + R+KGLGEM A 
Sbjct: 530 RVYIALPPLYKIEKTVKKKRVIKYAWTDAELESATKELKK----GYTLQRYKGLGEMNAD 585

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET M+   RTL+RV I+ D       +  +  LMG K + R K+I++   F
Sbjct: 586 QLWETTMNPETRTLVRVRIDDDT----IAEKRVTTLMGDKVEPRRKWIEKNVKF 635


>gi|284010223|dbj|BAI66711.1| DNA gyrase B [Borrelia sp. BF16]
          Length = 625

 Score =  596 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 238/639 (37%), Positives = 359/639 (56%), Gaps = 19/639 (2%)

Query: 51  ILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVV 110
           +L+GLE VR RPGMYIG      LHHL  E+IDN++DE +AG+ + IEV ++ +  +TV 
Sbjct: 1   VLKGLEAVRKRPGMYIGSVSINGLHHLVYELIDNSIDEALAGFCDKIEVVINSDSSITVS 60

Query: 111 DNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELH 170
           DNGRGIP + H +    S LE++LT LH+GGKF+  TY++SGGLHGVGISVVNALS  L 
Sbjct: 61  DNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVVNALSSFLE 119

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V V R   +F Q FSRGIP S +E   +  + RGTR+ F  D +IF     +    L + 
Sbjct: 120 VFVYRDEKVFRQTFSRGIPTSEVEVVGESSS-RGTRVIFLADSEIFETL-EYSFEILSRR 177

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN-RSLISSEIFT 289
            +  A+L+ +++      +   +++       FY+ GG+++++     N RS+ S   F 
Sbjct: 178 LRELAFLNDKLQISIEDRRLGEKRFLE-----FYYEGGIRSFVDYLTNNSRSIQSDPYFV 232

Query: 290 GKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
                +      ++W   +   +  I S+ N I T +GGTH +G R  L + + +     
Sbjct: 233 EGVSNEVIVNIGLKWTEGY---SENILSFVNNIKTQDGGTHVTGFRSGLFKAMNEAFNRL 289

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
           +   K   ++  DD       ++S+ I EP+F GQTK KL +   ++ VE    D     
Sbjct: 290 KISKKDVPTLTLDDFKEGLTAVISIKIPEPQFEGQTKGKLGNSYVKKIVETITHDRLLKV 349

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
           +  NP+E   + +  I+ +  R   RK R    +K+    L LPGKLADCS       E+
Sbjct: 350 IANNPLEVEIIFDKAIKAARAREAARKARESERKKSTFESLALPGKLADCSSKNPIEREI 409

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS 526
           +IVEGDSAGGSAK  R+R  QA+LPL GK+LNV     +++  N +++ ++ +LG     
Sbjct: 410 YIVEGDSAGGSAKMGRDRFFQAILPLWGKMLNVEKTKEDRVITNDKLIPIIASLGAGVGK 469

Query: 527 QYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT 586
            +  E LRY KVIIM DADVDG+HI +LLLTFF++ M DLIE  H+++  PPL+++    
Sbjct: 470 TFCIERLRYHKVIIMADADVDGSHIRTLLLTFFFRYMRDLIENSHVYIAMPPLYKVKSEN 529

Query: 587 KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646
           K  Y +D+  K+  LE      + ++ + R+KGLGEM  +QL ET M+ + R +  V I+
Sbjct: 530 KVHYFYDDIEKESFLESIGSEKRDRVNLQRYKGLGEMNPTQLWETTMNPDTRKMKLVGID 589

Query: 647 KDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             +      +     LMG   + R +FI++ A  + ++ 
Sbjct: 590 DSM----QAERIFVTLMGDDVEPRREFIEQNALDVVNLD 624


>gi|229134401|ref|ZP_04263214.1| DNA topoisomerase 4 subunit B [Bacillus cereus BDRD-ST196]
 gi|229168314|ref|ZP_04296039.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH621]
 gi|228615140|gb|EEK72240.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH621]
 gi|228649022|gb|EEL05044.1| DNA topoisomerase 4 subunit B [Bacillus cereus BDRD-ST196]
          Length = 654

 Score =  596 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 241/651 (37%), Positives = 360/651 (55%), Gaps = 36/651 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AG+ + I V + 
Sbjct: 7   QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V+D GRG+P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 67  KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L VT+ R  +I+ Q+F  G  P + LEK  K +   GT + F+PD  IF     
Sbjct: 125 NALSEWLVVTIKRDGSIYEQRFENGGTPATTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 182

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L +  +  A+L   +K     ++   E       + F++  G++ ++    E + 
Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DVFHYETGIEAFVSYLNEEKD 235

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I   +     E+ G      E A  + +     I S+ N + T +GGTHE+G + A+TR
Sbjct: 236 SIHPVV-YFSGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA       ++  ++   D+      I+SV + E   +F GQTK KL + +A+ ++
Sbjct: 292 VFNEYARKVSLLKEKDKNLEGTDIREGLASIVSVRVPEDVLQFEGQTKGKLGTSEARSSI 351

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453
           +  + +   ++L +NP  AT L+   I+ ++ R   RK RE  R    +K     L GKL
Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I
Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A+G    +++  ED+ Y+KV+IMTDAD DGAHI  LLLTFFY+ M  LIE   +F
Sbjct: 472 NTIIYAIGGGVGNEFAVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G        YA  +E    + ++  K       + R+KGLGEM A QL 
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELGDVTKKVGK----GYMLQRYKGLGEMNADQLW 587

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV+I+         +  +  LMG K + R K+I+    F
Sbjct: 588 ETTMNPETRTLIRVKIDDASR----AERRVTTLMGDKVEPRRKWIERNVQF 634


>gi|322385164|ref|ZP_08058811.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus cristatus
           ATCC 51100]
 gi|321270788|gb|EFX53701.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus cristatus
           ATCC 51100]
          Length = 649

 Score =  596 bits (1535), Expect = e-168,   Method: Composition-based stats.
 Identities = 239/653 (36%), Positives = 366/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVADHGRGMPVGMH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMPDDTIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   V+   + ++   E        EF++  G++ ++    E+
Sbjct: 186 TDFKYNTIAERLKESAFLLRNVRLSLTDERTGEE-------VEFHYENGVEDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++      + E+ G     V+ A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KETLTPV-LYFEGEESG---FQVQVALQYNDGYSDNILSFVNNVRTKDGGTHETGLKTAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V++ + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 AVDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E   
Sbjct: 475 EINTMIYTIGAGVGTDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534

Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G        YA  +     +  +F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFGKGAM----LQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|301320449|gb|ADK69092.1| DNA gyrase, B subunit [Mycoplasma mycoides subsp. mycoides SC str.
           Gladysdale]
          Length = 634

 Score =  595 bits (1534), Expect = e-168,   Method: Composition-based stats.
 Identities = 256/649 (39%), Positives = 380/649 (58%), Gaps = 21/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S  Y A SI++L+GLE VR RPGMYIG T +  LHHL  E++DN++DE +AGYA+LI V+
Sbjct: 2   SQEYSAESIKVLKGLEAVRTRPGMYIGSTSKTGLHHLVWEILDNSIDEAMAGYADLINVT 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +     + V DNGRGIPV  +     KS L ++ T LHAGGKFD+ +Y+ISGGLHGVG S
Sbjct: 62  ITKENEIIVQDNGRGIPVGINS-DTKKSALSLVFTQLHAGGKFDSESYKISGGLHGVGAS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  + V V R N  + Q FS G       ++    + RGT++ F+PDP+IF +  
Sbjct: 121 VVNALSLYVEVEVYRNNIHYHQLFSEGGTKESELQQLGHTDLRGTKVKFKPDPEIFKETV 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   +    +  A+L+  +K   + ++       I +  E+ F  G+  Y++ K E +
Sbjct: 181 VFDYEVIKNKVKQLAFLNKGLKITLTDER-------IEKTVEYLFLNGILDYIKEKNETK 233

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + I+  IF   ++ +      VE A+ +  +    I ++ N I T EGGTHE GL+ AL 
Sbjct: 234 NKINPNIFYVDSKYEDI---EVEMALQYNSDYQENIITFVNNINTHEGGTHEDGLKQALI 290

Query: 340 RGIKKYAE--LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I +YA+  +  NK       DD+    + ILSV   +P++ GQTKTKL + DA+  V 
Sbjct: 291 RDINRYADTVIKNNKTPSKFSWDDIKEGMMCILSVRHTDPQYEGQTKTKLSNPDAKEAVN 350

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADC 456
             + + F+ +L+++P +A  +L+  +   + R+  +K RE   RK+A+    LPGKLADC
Sbjct: 351 IIIGNAFEEFLLKSPEDAKAILDKNVNAQKARIAAQKAREETRRKSALDSFSLPGKLADC 410

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
               +   EL++VEGDSAGGSAK  RNR  QA+LPLRGK+LNV      +  +N +I  +
Sbjct: 411 ETKDSSIAELYLVEGDSAGGSAKTGRNRKFQAILPLRGKVLNVERVTEARAFSNNEIKSI 470

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G   + +     LRY+K++IMTDADVDGAHI +LLLTFFY+ M  L+   H+++  
Sbjct: 471 ITAIGTGIKEELDLSKLRYKKIVIMTDADVDGAHIRTLLLTFFYRYMKPLVANGHIYIAQ 530

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL++I  G K  YA+ +    ++     +    K  I R+KGLGEM   QL ET MD  
Sbjct: 531 PPLYKIEAGKKIAYAYTDSQLDELKN--NEFNNLKYTIQRYKGLGEMDPLQLWETTMDPQ 588

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +RT+L++ +           +  + LMG   + R  +IQ+ A F++++ 
Sbjct: 589 QRTMLQISLEDAT----LANEVFSDLMGEDPELRKIYIQDNAKFVENID 633


>gi|284010225|dbj|BAI66712.1| DNA gyrase B [Borrelia turcica]
          Length = 625

 Score =  595 bits (1534), Expect = e-168,   Method: Composition-based stats.
 Identities = 244/639 (38%), Positives = 358/639 (56%), Gaps = 19/639 (2%)

Query: 51  ILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVV 110
           +L+GLE VR RPGMYIG      LHHL  EV+DN++DE +AG+ + IE+ ++ +  +TV 
Sbjct: 1   VLKGLEAVRKRPGMYIGSVSINGLHHLVYEVVDNSIDEALAGFCDKIEIVINSDNSITVS 60

Query: 111 DNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELH 170
           DNGRGIP + H +    S LE++LT LH+GGKF+  TY++SGGLHGVGISVVNALS  L 
Sbjct: 61  DNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVVNALSSFLE 119

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V V R   +F Q FSRGIP S +E   +  + RGT++TF  D +IF     +    L K 
Sbjct: 120 VFVRRDGKVFRQTFSRGIPTSEVEVVGESCS-RGTKVTFLADYEIFETLN-YSFETLSKR 177

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  A+L+ +++      +   EK+       FYF GG+K ++     N   I SE +  
Sbjct: 178 LKELAFLNDKIRISIEDRRLGEEKFKE-----FYFEGGIKAFVDYLTNNSRNIQSEPYFI 232

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
           +          V+  + W E     I S+ N I T EGGTH +G R  L + + +  ++T
Sbjct: 233 EGSFDEVI---VDVGLKWTEGYSENILSFVNNINTREGGTHVAGFRSGLFKAMNEAFKMT 289

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
           +   K    +  DD       ++S+ + EP+F GQTK KL +   ++ VE  + D     
Sbjct: 290 KISKKDVPILTLDDFKEGLTAVISIKVPEPQFEGQTKGKLGNSYVKKIVETVVHDGLLSI 349

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
           +  NP+E   + +  I  +  R   RK R    +K+    L LPGKLADCS       E+
Sbjct: 350 INDNPLEIEVIFDKAIRAARAREAARKARESERKKSTFESLALPGKLADCSSKNPVEREI 409

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS 526
           +IVEGDSAGGSAK  R+R  QA+LPL GK+LNV     +K+  N +++ ++ +LG     
Sbjct: 410 YIVEGDSAGGSAKMGRDRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGK 469

Query: 527 QYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT 586
            +  E LRY KVIIM DADVDG+HI +LLLTFF++ M  L+E KH+++  PPL++I    
Sbjct: 470 TFCIERLRYHKVIIMADADVDGSHIRTLLLTFFFRYMRTLVENKHVYIAMPPLYKIKSEN 529

Query: 587 KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646
           +  Y +D+  K+  L   +   + KI + R+KGLGEM  +QL ET M+   R +  + I+
Sbjct: 530 RVHYFYDDLEKESFLGSIESDKRDKINLQRYKGLGEMNPTQLWETTMNPATRKMKLIGID 589

Query: 647 KDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             +            LMG   + R +FI++ A  + ++ 
Sbjct: 590 DAM----QADRIFVTLMGDDVEPRREFIEQNALDVVNLD 624


>gi|42560566|ref|NP_975017.1| DNA gyrase subunit B [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|42492062|emb|CAE76659.1| DNA Gyrase Subunit B [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
          Length = 634

 Score =  595 bits (1534), Expect = e-168,   Method: Composition-based stats.
 Identities = 255/649 (39%), Positives = 379/649 (58%), Gaps = 21/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S  Y A SI++L+GLE VR RPGMYIG T +  LHHL  E++DN++DE +AGYA+LI V+
Sbjct: 2   SQEYSAESIKVLKGLEAVRTRPGMYIGSTSKTGLHHLVWEILDNSIDEAMAGYADLINVT 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +     + V DNGRGIPV  +     KS L ++ T LHAGGKFD+ +Y+ISGGLHGVG S
Sbjct: 62  ITKENEIIVQDNGRGIPVGINS-DTKKSALSLVFTQLHAGGKFDSESYKISGGLHGVGAS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  + V V R N  + Q FS G       ++    + RGT++ F+PDP+IF +  
Sbjct: 121 VVNALSLYVEVEVYRNNIHYHQLFSEGGTKESELQQLGHTDLRGTKVKFKPDPEIFKETV 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   +    +  A+L+  +K   + ++       I +  E+ F  G+  Y++ K E +
Sbjct: 181 VFDYEVIKNKVKQLAFLNKGLKITLTDER-------IEKTVEYLFLNGILDYIKEKNETK 233

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + I+  IF   ++ +      VE A+ +  +    I ++ N I T EGGTHE GL+  L 
Sbjct: 234 NKINPNIFYVDSKYEDI---EVEMALQYNSDYQENIITFVNNINTHEGGTHEDGLKQVLI 290

Query: 340 RGIKKYAE--LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I +YA+  +  NK       DD+    + ILSV   +P++ GQTKTKL + DA+  V 
Sbjct: 291 RDINRYADTVIKNNKTPSKFSWDDIKEGMMCILSVRHTDPQYEGQTKTKLSNPDAKEAVN 350

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADC 456
             + + F+ +L+++P +A  +L+  +   + R+  +K RE   RK+A+    LPGKLADC
Sbjct: 351 IIIGNAFEEFLLKSPEDAKAILDKNVNAQKARIAAQKAREETRRKSALDSFSLPGKLADC 410

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
               +   EL++VEGDSAGGSAK  RNR  QA+LPLRGK+LNV      +  +N +I  +
Sbjct: 411 ETKDSSIAELYLVEGDSAGGSAKTGRNRKFQAILPLRGKVLNVERVTEARAFSNNEIKSI 470

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G   + +     LRY+K++IMTDADVDGAHI +LLLTFFY+ M  L+   H+++  
Sbjct: 471 ITAIGTGIKEELDLSKLRYKKIVIMTDADVDGAHIRTLLLTFFYRYMKPLVANGHIYIAQ 530

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL++I  G K  YA+ +    ++     +    K  I R+KGLGEM   QL ET MD  
Sbjct: 531 PPLYKIEAGKKIAYAYTDSQLDELKN--NEFNNLKYTIQRYKGLGEMDPLQLWETTMDPQ 588

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +RT+L++ +           +  + LMG   + R  +IQ+ A F++++ 
Sbjct: 589 QRTMLQISLEDAT----LANEVFSDLMGEDPELRKIYIQDNAKFVENID 633


>gi|59798277|sp|Q6GH51|PARE_STAAR RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
          Length = 663

 Score =  595 bits (1534), Expect = e-168,   Method: Composition-based stats.
 Identities = 241/654 (36%), Positives = 361/654 (55%), Gaps = 31/654 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  +NY   SI++LEGLE VR RPGMYIG TD++ LHHL  E++DN++DEV+ GY N I+
Sbjct: 2   NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+++ +G +++ DNGRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG
Sbjct: 62  VTINKDGSISIEDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS+ L V + R   I+ Q F  G   S    K+    K GT++TF+PD  IF  
Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L +  Q  A+L   +K   +  +   E      +E +++  G+K ++    E
Sbjct: 180 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKE-----RQEHYHYEEGIKEFVSYVNE 234

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            + ++  ++ T   E  G     V+ A  + ++    I S+ N + T +GGTHE G + A
Sbjct: 235 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 290

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
           +TR    YA        +  ++  +D+      ++SV I E   +F GQTK+KL + +A+
Sbjct: 291 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR 350

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450
             V++ + D    YL +    +  L++  I+  + R   RK RE  R     K     L 
Sbjct: 351 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 410

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  E I  N
Sbjct: 411 GKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 470

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    + ++ ED  Y +VIIMTDAD DGAHI  LLLTFF++ M  L++  
Sbjct: 471 EEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 530

Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +F+  PPL+++ +G     +  YA  +E   K+ +E  K       + R+KGLGEM   
Sbjct: 531 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNPE 586

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET M+   RTL+RV++  ++ S K     +  LMG K   R ++I++   F
Sbjct: 587 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVQPRREWIEKHFEF 636


>gi|171779306|ref|ZP_02920270.1| hypothetical protein STRINF_01147 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281923|gb|EDT47354.1| hypothetical protein STRINF_01147 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 649

 Score =  595 bits (1534), Expect = e-168,   Method: Composition-based stats.
 Identities = 238/653 (36%), Positives = 370/653 (56%), Gaps = 34/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+   I+V L
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLVWEIVDNAVDEALSGFGTQIDVIL 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G +TV D GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NQDGSVTVKDQGRGMPTGKH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F   G P++ L+K     ++K GT +TF PD  IF   
Sbjct: 127 VNALSRWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKSGTMVTFMPDDTIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   V    + ++         E  EF++  G++ +++   E+
Sbjct: 186 TDFKFNTIAERLKESAFLLKNVTLTLTDNR-----PEEAEHLEFHYENGVQDFVEYLNED 240

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++  I+    E +G     VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 241 KETLTPVIWV-TGEDQG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 296

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  +    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 297 TKAMNDYARKSGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARP 356

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V++ + +    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 357 IVDSIVSEKLTFFLLENGEVASNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 416

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN A A    I  N+
Sbjct: 417 KLTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMSDILKNE 476

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + ++ E+  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 477 EINTMIYTIGAGVGADFKVENSNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 536

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +++ ++F K      ++ R+KGLGEM A Q
Sbjct: 537 VYIALPPLYKMSKGKGKKEQVEYAWTDGELEELRQKFGK----GAQLQRYKGLGEMNADQ 592

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I+     L   +  ++ LMG K + R K+I++   F
Sbjct: 593 LWETTMNPETRTLIRVTIDD----LARAERRVSVLMGDKVEPRRKWIEDNVKF 641


>gi|169828512|ref|YP_001698670.1| DNA topoisomerase IV subunit B [Lysinibacillus sphaericus C3-41]
 gi|168993000|gb|ACA40540.1| DNA topoisomerase 4 subunit B [Lysinibacillus sphaericus C3-41]
          Length = 667

 Score =  595 bits (1534), Expect = e-168,   Method: Composition-based stats.
 Identities = 242/658 (36%), Positives = 355/658 (53%), Gaps = 35/658 (5%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
            N+ +   Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DE +AG+ +
Sbjct: 11  TNKQSPSVYNDDAIQVLEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALAGFGS 70

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V +  +  ++V D GRG+P   H     K T EII T LHAGGKF    Y+ SGGLH
Sbjct: 71  HIIVKIHKDQSISVRDFGRGMPTGMHKM--GKPTPEIIFTVLHAGGKFGQGGYKTSGGLH 128

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPK 214
           GVG SVVNALS  L VT+ R    + Q+F  G  P++ LE+    + + GT + F PD  
Sbjct: 129 GVGSSVVNALSTFLEVTIHRDGKKYRQRFEHGGHPVTTLEEIGHTK-QTGTLVHFLPDET 187

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     F+   L +  +  A+L   +K     ++E        + + F++  G++ ++ 
Sbjct: 188 IFSVT-KFNYDTLAERLRESAFLLKGLKIELIDERE------EGKNDVFFYENGIEAFVA 240

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              E + ++    +    +        VE+A  + +     I S+ N + T +GGTHE+G
Sbjct: 241 YLNEEKDVLHPVKYVEGIQDD----IEVEFAFQYNDGYSETILSFVNNVRTRDGGTHETG 296

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVS 389
            + ALTR   +YA        +  ++   D+      I+SV I E   +F GQTK KL +
Sbjct: 297 AKAALTRVFNEYARKIGLLKDKDKNLEGTDIREGLAAIVSVRIPEHLLQFEGQTKGKLGT 356

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK--- 446
            +A+  V++ + +   + L +N   +  L+   I   + R   RK RE  R     K   
Sbjct: 357 SEARSAVDSVVSEQILYVLEENAELSASLVRKAIRAQQVREAARKAREDARNGKKNKKGS 416

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             L GKL       A   EL++VEGDSAGGSAKQ R+R+ QA+LPLRGK++N   A  + 
Sbjct: 417 TILSGKLTPAQSRNAAKNELYLVEGDSAGGSAKQGRDRTFQAILPLRGKVINTEKAKLQD 476

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           I  N++I  ++ A+G    + +  ED  Y KV+IMTDAD DGAHI  LLLTFFY+ M  L
Sbjct: 477 IMKNEEISTIIHAIGAGVGTDFAVEDSAYNKVVIMTDADTDGAHIQVLLLTFFYRYMRPL 536

Query: 567 IEQKHLFLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
           IE   +F+  PPL+++++G   K V  YA  E   QK +++  K       + R+KGLGE
Sbjct: 537 IEAGKVFIALPPLYKVSKGTGKKEVIEYAWTENDLQKAIKQVGK----GYILQRYKGLGE 592

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           M A QL +T M+ + RTL+RV I          +  +  LMG K + R K+I+    F
Sbjct: 593 MNADQLWDTTMNPDTRTLIRVTIEDG----ARAERRVTTLMGDKVEPRRKWIEANVDF 646


>gi|49483547|ref|YP_040771.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49241676|emb|CAG40364.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           MRSA252]
          Length = 665

 Score =  595 bits (1534), Expect = e-168,   Method: Composition-based stats.
 Identities = 241/654 (36%), Positives = 361/654 (55%), Gaps = 31/654 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  +NY   SI++LEGLE VR RPGMYIG TD++ LHHL  E++DN++DEV+ GY N I+
Sbjct: 4   NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 63

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+++ +G +++ DNGRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG
Sbjct: 64  VTINKDGSISIEDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 121

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS+ L V + R   I+ Q F  G   S    K+    K GT++TF+PD  IF  
Sbjct: 122 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 181

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L +  Q  A+L   +K   +  +   E      +E +++  G+K ++    E
Sbjct: 182 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKE-----RQEHYHYEEGIKEFVSYVNE 236

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            + ++  ++ T   E  G     V+ A  + ++    I S+ N + T +GGTHE G + A
Sbjct: 237 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 292

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
           +TR    YA        +  ++  +D+      ++SV I E   +F GQTK+KL + +A+
Sbjct: 293 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR 352

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450
             V++ + D    YL +    +  L++  I+  + R   RK RE  R     K     L 
Sbjct: 353 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 412

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  E I  N
Sbjct: 413 GKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 472

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    + ++ ED  Y +VIIMTDAD DGAHI  LLLTFF++ M  L++  
Sbjct: 473 EEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 532

Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +F+  PPL+++ +G     +  YA  +E   K+ +E  K       + R+KGLGEM   
Sbjct: 533 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNPE 588

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET M+   RTL+RV++  ++ S K     +  LMG K   R ++I++   F
Sbjct: 589 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVQPRREWIEKHFEF 638


>gi|315613333|ref|ZP_07888242.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis
           ATCC 49296]
 gi|315314568|gb|EFU62611.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis
           ATCC 49296]
          Length = 649

 Score =  595 bits (1534), Expect = e-168,   Method: Composition-based stats.
 Identities = 242/653 (37%), Positives = 365/653 (55%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+   I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGERIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEK-VRNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R  T++ Q+F   G P++ LEK     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGTVYKQRFENGGKPVTTLEKVGTAAKSKTGTKVTFMPDATIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V    +  +         E  EF++  G++ ++    E+
Sbjct: 186 IDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++      + E  G     VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KETLTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 IVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 475 EINTMIYTIGAGVGADFSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +++ ++F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|73916414|gb|AAZ93075.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916448|gb|AAZ93092.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916454|gb|AAZ93095.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916456|gb|AAZ93096.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916458|gb|AAZ93097.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
 gi|73916464|gb|AAZ93100.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
          Length = 647

 Score =  595 bits (1534), Expect = e-168,   Method: Composition-based stats.
 Identities = 238/653 (36%), Positives = 366/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS+ L V + R   ++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSNWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V    +  +         E  EF++  G++ ++    E+
Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           + +++      + E  G     VE A+ + +   +   S+ N + T +GGTHE+G + A+
Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGFKSAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAVVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEG+SAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGNSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +++ ++F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|320546627|ref|ZP_08040939.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus equinus
           ATCC 9812]
 gi|320448682|gb|EFW89413.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus equinus
           ATCC 9812]
          Length = 649

 Score =  595 bits (1534), Expect = e-168,   Method: Composition-based stats.
 Identities = 241/653 (36%), Positives = 371/653 (56%), Gaps = 34/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ N I+V L
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLVWEIVDNAVDEALSGFGNQIDVIL 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G +TV D GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NQDGSVTVKDQGRGMPTGKH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F   G P++ L+K     ++K GT +TF PD KIF   
Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKSGTTVTFMPDDKIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   V    + ++         E  EF++  G++ +++   E+
Sbjct: 186 TDFKFNTIAERLKESAFLLKDVTLTLTDER-----PEEAEHLEFHYVNGVQDFVEYLNED 240

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++  I+    E +G     VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 241 KETLTPVIWV-TGEDQG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 296

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  +    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 297 TKAMNDYARKSGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARP 356

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V++ + +    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 357 IVDSIVSEKLTFFLLENGEVASNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 416

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN A A    I  N+
Sbjct: 417 KLTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMSDIVKNE 476

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + ++ E+  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 477 EINTMIYTIGGGVGADFKVENSNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 536

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +++ ++F K      ++ R+KGLGEM A Q
Sbjct: 537 VYIALPPLYKMSKGKGKKEQVEYAWTDGELEELRQKFGK----GAQLQRYKGLGEMNADQ 592

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 593 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 641


>gi|284010229|dbj|BAI66714.1| DNA gyrase B [Borrelia sp. Tortoise14H1]
          Length = 625

 Score =  595 bits (1534), Expect = e-168,   Method: Composition-based stats.
 Identities = 241/639 (37%), Positives = 357/639 (55%), Gaps = 19/639 (2%)

Query: 51  ILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVV 110
           +L+GLE VR RPGMYIG      LHHL  EV+DN++DE +AG+ + IEV ++ +  +TV 
Sbjct: 1   VLKGLEAVRKRPGMYIGSVSINGLHHLVYEVVDNSIDEALAGFCDKIEVVINSDNSITVS 60

Query: 111 DNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELH 170
           DNGRGIP + H +    S LE++LT LH+GGKF+  TY++SGGLHGVGISVVNALS  L 
Sbjct: 61  DNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVVNALSSFLE 119

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V V R   +F Q FSRG+P S +E   +    RGT++TF  D ++F     +    L K 
Sbjct: 120 VFVRRDGKVFRQTFSRGVPTSEVEVVGE-SFSRGTKVTFLADYEVFETLN-YSFEILSKR 177

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  A+L+ +++      +   EK+       FYF GG+K ++     N   I SE +  
Sbjct: 178 LKELAFLNDKIRISIEDRRIGEEKFKE-----FYFEGGIKAFVDYLTNNSRNIQSEPYFI 232

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
           +          V+  + W E     I S+ N I T EGGTH +G R  L + + +  + T
Sbjct: 233 EGSFDEVI---VDVGLKWTEGYSENILSFVNNINTREGGTHVAGFRSGLFKAMNEAFKGT 289

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
           +   K   ++  DD       ++S+ + EP+F GQTK KL +   ++ VE  + D     
Sbjct: 290 KISKKDVPTLTLDDFKEGLTAVISIKVPEPQFEGQTKGKLGNSYVKKIVETIVHDGLLRI 349

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
           +  N +E   + +  I  +  R   RK R    +K+    L LPGKLADCS       E+
Sbjct: 350 INDNSLEIEIIFDKAIRAARAREAARKARESERKKSTFESLALPGKLADCSSKNPVEREI 409

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS 526
           +IVEGDSAGGSAK  R+R  QA+LPL GK+LNV     +K+  N +++ ++ +LG     
Sbjct: 410 YIVEGDSAGGSAKMGRDRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGK 469

Query: 527 QYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT 586
            +  E LRY KVIIM DADVDG+HI +LLLTFF++ M  L+E KH+++  PPL+++    
Sbjct: 470 TFCIERLRYHKVIIMADADVDGSHIRTLLLTFFFRYMRTLVENKHVYIAMPPLYKVKSEN 529

Query: 587 KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646
           +  Y +D+  K+  L   +   + KI + R+KGLGEM  +QL ET M+   R +  + I+
Sbjct: 530 RVHYFYDDLEKESFLGSIESEKRDKINLQRYKGLGEMNPTQLWETTMNPATRKMKLIGID 589

Query: 647 KDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             +      +     LMG   + R +FI++ A  + ++ 
Sbjct: 590 DAM----QAERIFVTLMGDDVEPRREFIEQNALDVVNLD 624


>gi|229012772|ref|ZP_04169941.1| DNA topoisomerase 4 subunit B [Bacillus mycoides DSM 2048]
 gi|228748453|gb|EEL98309.1| DNA topoisomerase 4 subunit B [Bacillus mycoides DSM 2048]
          Length = 654

 Score =  595 bits (1534), Expect = e-168,   Method: Composition-based stats.
 Identities = 241/651 (37%), Positives = 360/651 (55%), Gaps = 36/651 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AG+ + I V + 
Sbjct: 7   QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V+D GRG+P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 67  KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L VT+ R  +I+ Q+F  G  P + LEK  K +   GT + F+PD  IF     
Sbjct: 125 NALSEWLVVTIKRDGSIYEQRFENGGTPATTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 182

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L +  +  A+L   +K     ++   E       + F++  G++ ++    E + 
Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DVFHYETGIEAFVSYLNEEKD 235

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I   +     E+ G      E A  + +     I S+ N + T +GGTHE+G + A+TR
Sbjct: 236 SIHPVV-YFSGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA       ++  ++   D+      I+SV + E   +F GQTK KL + +A+ ++
Sbjct: 292 VFNEYARKVSLLKEKDKNLEGTDIREGLASIVSVRVPEDVLQFEGQTKGKLGTSEARSSI 351

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453
           +  + +   ++L +NP  AT L+   I+ ++ R   RK RE  R    +K     L GKL
Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I
Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A+G    +++  ED+ Y+KV+IMTDAD DGAHI  LLLTFFY+ M  LIE   +F
Sbjct: 472 NTIIYAIGGGVGNEFAVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531

Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G        YA  +E    + ++  K       + R+KGLGEM A QL 
Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELGDVTKKVGK----GYMLQRYKGLGEMNADQLW 587

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV+I+         +  +  LMG K + R K+I+    F
Sbjct: 588 ETTMNPETRTLIRVKIDDASR----AERRVTTLMGDKVEPRRKWIERNVQF 634


>gi|303233456|ref|ZP_07320124.1| DNA gyrase, B subunit [Atopobium vaginae PB189-T1-4]
 gi|302480464|gb|EFL43556.1| DNA gyrase, B subunit [Atopobium vaginae PB189-T1-4]
          Length = 648

 Score =  595 bits (1534), Expect = e-168,   Method: Composition-based stats.
 Identities = 254/660 (38%), Positives = 371/660 (56%), Gaps = 26/660 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            + S++Y  + I++LEGL+PVR RPGMYIG T    LHHL  E++DN++DE +AG+   I
Sbjct: 2   TTPSNSYTGNEIKVLEGLDPVRKRPGMYIGTTSAAGLHHLVWEIVDNSVDEAMAGFCTSI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           EV++  +  ++V DNGRGIPVE HP+     TLE++LT LHAGGKFDN+ Y++SGGLHGV
Sbjct: 62  EVTVHPDNSISVKDNGRGIPVEIHPQ-KKIPTLEVVLTILHAGGKFDNAAYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS  L  TV R   IF  +F RG     +++        GT ITF PD  IF 
Sbjct: 121 GVSVVNALSKRLIATVERDGGIFQMEFERGKVTKKMQQIGTSSK-TGTTITFWPDDLIFE 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               ++   L    Q  A+L+  +    + ++E       P  EE+ + GG+  +++   
Sbjct: 180 TTV-YNFETLQNRLQETAFLNKNLHIRITDEREE-----TPRVEEYCYSGGIIDFVKFLN 233

Query: 278 ENRSLIS--SEIFTGKTEKKG----THRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTH 330
           E ++ +   +     + +       T +G VE AI W     E   S+ N I TDEGG H
Sbjct: 234 EEKTPLPGLTTPIYIEGQSDESAPLTQKGEVEVAIQWNTSYSEYVMSFANDIYTDEGGMH 293

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALT+ +  YA       ++  ++  DD+      ++SV + +P+F GQTK KL 
Sbjct: 294 LEGFRTALTKTVNDYARGHNLLKEKDSNLTGDDIREGLCAVISVKLPDPQFEGQTKAKLG 353

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKL 447
           S   +      +      Y  ++P +A ++ +   + ++ RL  +K R+V R+  +    
Sbjct: 354 SSYMRSLTNKIVAAGLTEYFEEHPNQAKEIFKKAAQAAKGRLAAQKARQVARRKGLLESA 413

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADCS   A  TELFIVEGDSAGGSAK AR+RS QAVLPLRGKILNV     ++ 
Sbjct: 414 SLPGKLADCSVRDAEMTELFIVEGDSAGGSAKMARDRSIQAVLPLRGKILNVERVQQDRA 473

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
            +++ I  L+ A+G    +++  E  RY K++IMTDADVDGAHI  LLLTFFY+ M  L+
Sbjct: 474 LSSETITSLITAIGTGVGNEFNIEKARYHKIVIMTDADVDGAHIRILLLTFFYRYMKPLV 533

Query: 568 EQKHLFLISPPLFRITQGTKSVY--AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           +   +++  PPL++I    K      + +E     +E  +     K  + R+KGLGEM  
Sbjct: 534 DAGFIYVAQPPLYQIKAKGKKYGKYLYTDEEL--AIEAREYDDPSKYTVQRYKGLGEMDP 591

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL  T M+   R +LRV I       +D + ++  LMG++ ++R  FIQ  A  +  + 
Sbjct: 592 EQLWSTTMEPKNRIMLRVTIED----ARDAERAVANLMGSQVEKRKDFIQTHAKDVRFLD 647


>gi|256384292|gb|ACU78862.1| DNA gyrase, B subunit [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256385125|gb|ACU79694.1| DNA gyrase, B subunit [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455935|gb|ADH22170.1| DNA gyrase, B subunit [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 634

 Score =  595 bits (1533), Expect = e-168,   Method: Composition-based stats.
 Identities = 257/649 (39%), Positives = 380/649 (58%), Gaps = 21/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S  Y A SI++L+GLE VR RPGMYIG T +  LHHL  E++DN++DE +AGYA+LI V+
Sbjct: 2   SQEYSAESIKVLKGLEAVRTRPGMYIGSTSKTGLHHLVWEILDNSIDEAMAGYADLINVT 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +     + V DNGRGIPV  +     KS L ++ T LHAGGKFD+ TY+ISGGLHGVG S
Sbjct: 62  ITKENEVIVQDNGRGIPVGINS-DTKKSALSLVFTQLHAGGKFDSETYKISGGLHGVGAS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  + V V R N  + Q FS G       ++    + RGT++ F+PDP+IF +  
Sbjct: 121 VVNALSLYVEVEVYRNNIHYHQLFSEGGTKESELQQLGHTDLRGTKVKFKPDPEIFKETV 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   +    +  A+L+  +K   + ++       I +  E+ F  G+  Y++ K E +
Sbjct: 181 VFDYEIIKNKVKQLAFLNKGLKITLTDER-------IEKTVEYLFLNGILDYIKEKNETK 233

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + I+  IF   ++ +      VE A+ +  +    I ++ N I T EGGTHE GL+ AL 
Sbjct: 234 NKINPNIFYVDSKYEDI---EVEMALQYNSDYQENIITFVNNINTHEGGTHEDGLKQALI 290

Query: 340 RGIKKYAE--LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I +YA+  +  NK       DD+    + ILSV   +P++ GQTKTKL + DA+  V 
Sbjct: 291 RDINRYADTVIKNNKTPSKFSWDDIKEGMMCILSVRHTDPQYEGQTKTKLSNPDAKEAVN 350

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADC 456
             + + F+ +L+++P +A  +L+  +   + R+  +K RE   RK+A+    LPGKLADC
Sbjct: 351 IIIGNAFEEFLLKSPEDAKAILDKNVNAQKARIAAQKAREETRRKSALDSFSLPGKLADC 410

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
               +   EL++VEGDSAGGSAK  RNR  QA+LPLRGK+LNV      +  +N +I  +
Sbjct: 411 ETKDSSIAELYLVEGDSAGGSAKTGRNRKFQAILPLRGKVLNVERVTEARAFSNNEIKSI 470

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G   + +     LRY+K++IMTDADVDGAHI +LLLTFFY+ M  L+   H+++  
Sbjct: 471 ITAVGTGIKEELDLSKLRYKKIVIMTDADVDGAHIRTLLLTFFYRYMKPLVANGHIYIAQ 530

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL++I  G K  YA+ +    ++     +    K  I R+KGLGEM   QL ET MD  
Sbjct: 531 PPLYKIEAGKKIAYAYTDSQLDELKN--NEFNNLKYTIQRYKGLGEMDPLQLWETTMDPQ 588

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +RT+L++ +           +  + LMG   + R  +IQ+ A F++++ 
Sbjct: 589 QRTMLQISLEDAT----LANEVFSDLMGEDPELRKIYIQDNAKFVENID 633


>gi|217976614|ref|YP_002360761.1| DNA topoisomerase IV subunit B [Methylocella silvestris BL2]
 gi|217501990|gb|ACK49399.1| DNA topoisomerase IV, B subunit [Methylocella silvestris BL2]
          Length = 698

 Score =  595 bits (1533), Expect = e-168,   Method: Composition-based stats.
 Identities = 384/671 (57%), Positives = 483/671 (71%), Gaps = 7/671 (1%)

Query: 15  QSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKAL 74
            ++ S+ K          PA         Y A+SI +LEGLEPVR RPGMYIGGTDE AL
Sbjct: 25  SARSSAAKGADIKSAAQEPARLGTPGEAGYTAASIEVLEGLEPVRRRPGMYIGGTDEAAL 84

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           HHLF+EV+DNAMDE +AG+A+ I+VS D  GFL+V DNGRGIPV+ HPKFP KS LE+I+
Sbjct: 85  HHLFAEVLDNAMDEAVAGHASFIDVSYDAAGFLSVTDNGRGIPVDPHPKFPKKSALEVIM 144

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           TTLHAGGKFD+  Y+ SGGLHGVG+SVVNALS+ L V VAR  T++ Q F+RG PL  LE
Sbjct: 145 TTLHAGGKFDSGAYQTSGGLHGVGVSVVNALSESLEVEVARGQTLYRQSFARGKPLGRLE 204

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE- 253
           +  K  N+RGTR+ F PDP+IFG  A F  ARL+KM ++KAYL G V+  W C  E  E 
Sbjct: 205 EVGKAPNRRGTRVRFTPDPQIFGKGAQFKPARLVKMARAKAYLFGGVEIRWRCAPERIEP 264

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-N 312
               P +  F+FPGGLK +L   +E +  +   IF GK EK G H G++EWA+AW    +
Sbjct: 265 GSSTPREAVFHFPGGLKDFLAVDIEGKERVIEPIFAGKIEKPGGH-GSLEWALAWLAMDD 323

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILS 371
             + SYCNTI T +GG HE+GLR AL RG+K +AE     +RA +I +DD+M S   ++S
Sbjct: 324 GFVHSYCNTIPTPDGGAHEAGLRAALLRGLKDHAERIGQSRRAAAISADDVMGSCAALVS 383

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           +FIREPEF GQ K++L+S +A R V+  +RD FDH+L   P  A KLL+W +ER+E+RLR
Sbjct: 384 IFIREPEFQGQNKSRLMSAEASRIVDQTVRDAFDHWLAAAPSHALKLLDWAVERAEDRLR 443

Query: 432 RRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           RR +++V RKTA RKLRLPGKLADCS   A G+ELFIVEGDSAGGSAKQ RNR++QA+LP
Sbjct: 444 RRAEKDVARKTASRKLRLPGKLADCSNTAAQGSELFIVEGDSAGGSAKQGRNRASQAILP 503

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHI 551
           LRGKILNVASA  +K+  NQQ+ DL+ ALGC   + YRE++LRYEK+IIMTDADVDGAHI
Sbjct: 504 LRGKILNVASATRDKLAANQQLSDLMLALGCGVGAHYREDELRYEKIIIMTDADVDGAHI 563

Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK 611
           ASLL+TFFY++   LIE  HL+L  PPL+R+TQG + VYA D+ H+ +++      G+GK
Sbjct: 564 ASLLITFFYRQTPKLIEGGHLYLAVPPLYRLTQGARQVYARDDAHRDELIARVL-TGRGK 622

Query: 612 IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERF 671
           IEISRFKGLGEML +QLKET MD  KR LLRV +       + T DS+ +LMG K + RF
Sbjct: 623 IEISRFKGLGEMLPAQLKETTMDPGKRNLLRVVV--LPEDREGTSDSVERLMGNKPEARF 680

Query: 672 KFIQERASFID 682
            FIQERA+F +
Sbjct: 681 AFIQERAAFAN 691


>gi|301300621|ref|ZP_07206811.1| DNA topoisomerase IV, B subunit [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851775|gb|EFK79469.1| DNA topoisomerase IV, B subunit [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 673

 Score =  595 bits (1533), Expect = e-168,   Method: Composition-based stats.
 Identities = 244/654 (37%), Positives = 366/654 (55%), Gaps = 33/654 (5%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
             +NY+  SI++L+GLE VR RPGMYIG TD + LHHL  E+ DNA+DE ++GY   I V
Sbjct: 2   PKNNYNDDSIQVLKGLEAVRKRPGMYIGSTDTRGLHHLVYEIFDNAVDEALSGYGKEINV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            +  +  +TVVDNGRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHGVG 
Sbjct: 62  IIHKDDSITVVDNGRGMPVGMHSM--GIPTVEVIFTVLHAGGKFGQGDYKTSGGLHGVGA 119

Query: 160 SVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           SVVNALS +L V   R    + + F + G P+  L K  K + K GT++TF+PD  IF  
Sbjct: 120 SVVNALSSKLTVNTVRDGIEYEEDFVNGGQPVGTLRKIGKAKRKSGTKVTFKPDANIFST 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              ++   L +  +  A+L   VK   + ++          +EEF +  G+K +++   E
Sbjct: 180 T-KYNFNTLAERLRESAFLLKGVKITLTDER-----TDPYTEEEFLYAEGIKEFVEYLNE 233

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           ++ ++   +   + +K G     VE A  + +     I S+ N + T +GGTHE+G++ A
Sbjct: 234 DKDVLGPVM-YFEGKKDGI---EVEVAGQYNDGYSETIMSFVNNVRTKDGGTHEAGMKAA 289

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
            T+   +YA        +  ++   D+      ++SV I E   +F GQTK KL + +A+
Sbjct: 290 WTKAFNEYARKINLLKDKDKNLEGSDVREGLSAVVSVRIPEELLQFEGQTKGKLGTPEAR 349

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LP 450
           + V++ + +   ++L++N   A +L+   I+  E R   RK R+ +R    R+     L 
Sbjct: 350 QIVDSVVNEQLGYFLMENGDFAQELVRKSIKAREAREAARKARDESRNGKKRRKSERLLS 409

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL       A   ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + I  N
Sbjct: 410 GKLTPAQSKNAKRNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIMKN 469

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    +++  +D  Y+KVIIMTDAD DGAHI +LLLTFFY+ M  +I   
Sbjct: 470 EEINTMIYTIGAGVGAEFNIDDANYDKVIIMTDADTDGAHIQTLLLTFFYKYMRPMINAG 529

Query: 571 HLFLISPPLFRI----TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +++  PPL++I     +     YA  +   + + +E KK       + R+KGLGEM A 
Sbjct: 530 RVYIALPPLYKIEKTVKKKRVIKYAWTDAELESVTKELKK----GYTLQRYKGLGEMNAD 585

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET M+   RTL+RV+I+ D       +  +  LMG K + R K+I++   F
Sbjct: 586 QLWETTMNPETRTLVRVKIDDDT----IAEKRVTTLMGDKVEPRRKWIEKNVKF 635


>gi|290580369|ref|YP_003484761.1| putative DNA topoisomerase IV subunit B [Streptococcus mutans
           NN2025]
 gi|254997268|dbj|BAH87869.1| putative DNA topoisomerase IV subunit B [Streptococcus mutans
           NN2025]
          Length = 649

 Score =  595 bits (1533), Expect = e-168,   Method: Composition-based stats.
 Identities = 240/653 (36%), Positives = 364/653 (55%), Gaps = 34/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ N I+V +
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGNQIDVII 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G +TV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSITVADHGRGMPTGKH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F  G  P + LEK  K  ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGIVYKQRFEDGGKPATTLEKVGKAPKSKSGTKVTFMPDTGIFSTT 186

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V    + ++         E   F++  G++ +++   E+
Sbjct: 187 N-FVYNTIAERLNESAFLLKNVTLTLTDERSE-----ETEHVAFHYENGVQDFVEYLNED 240

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           + +++  I+    E        VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 241 KEILTPVIYFEGEEAD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 296

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 297 TKAMNDYARKTGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARP 356

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK---TAIRKLRLPG 451
            V+  + +   ++L++N   A+ L+   I+  E R   RK R+ +R        K  L G
Sbjct: 357 IVDGLVSEQLTYFLMENGELASNLIRKAIKAREAREAARKARDDSRNGRKNKKDKGLLSG 416

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN A A  + I  N+
Sbjct: 417 KLTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMDDIIKNE 476

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G      ++ +D  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 477 EINTMIYTIGAGAGPDFKVDDSNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 536

Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G        YA  +   + + ++F K       + R+KGLGEM A Q
Sbjct: 537 VYIALPPLYKMSKGKGAKEVVEYAWTDGELEDLRKKFGKGAM----LQRYKGLGEMNADQ 592

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K   R K+I++   F
Sbjct: 593 LWETTMNPENRTLIRVTIED----LARAERRVNVLMGDKVPPRRKWIEDNVKF 641


>gi|32447712|gb|AAO16799.1| ParE [Streptococcus oralis ATCC 35037]
          Length = 647

 Score =  595 bits (1533), Expect = e-168,   Method: Composition-based stats.
 Identities = 241/653 (36%), Positives = 366/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R  T++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V    +  +         E  EF++  G++ ++ +  E+
Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSSLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++      + E  G     VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KETLTPV-LYFEGEDNG---FQVEDALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + D    +L++N   A  L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 VVDGIVADKLTFFLMENGELAPNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 475 EINTMIYTIGAGVGADFSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +++ ++F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|313680912|ref|YP_004058651.1| DNA gyrase subunit b [Oceanithermus profundus DSM 14977]
 gi|313153627|gb|ADR37478.1| DNA gyrase subunit B [Oceanithermus profundus DSM 14977]
          Length = 637

 Score =  595 bits (1533), Expect = e-168,   Method: Composition-based stats.
 Identities = 253/652 (38%), Positives = 367/652 (56%), Gaps = 29/652 (4%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YDASSI++L+GLE VR RP MYI GT     H L +E++DN++DE +AGYA+ I+V+L  
Sbjct: 4   YDASSIKVLKGLEGVRKRPAMYIAGTGTDGYHQLLTEILDNSVDEALAGYADTIKVTLHK 63

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G  +V DNGRGIPV+       K  +E+I T LHAGGKF+   Y++SGGLHGVG SVVN
Sbjct: 64  DGSASVEDNGRGIPVDVMA-GEGKPAVEVIYTELHAGGKFEEGAYKVSGGLHGVGASVVN 122

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222
           AL+D + V V R    +  +F+RG    PLE   K  + K GTR+ F PD  IF +   F
Sbjct: 123 ALTDWMVVEVWRGGKHYRIEFARGEVKKPLEVVGKAPKGKTGTRVHFMPDATIFEEGLEF 182

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D  R+ +  +  +YL+G ++   + ++         ++E F+  GG+ ++ +   E   L
Sbjct: 183 DYRRVRRRVREVSYLAGGLRIELADERS-------GKQEVFHDKGGVASFAKALAEGEDL 235

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           +  +      +        V+      +       SY N I T +GG H SG R A TR 
Sbjct: 236 LYDKPGRLSGQVDDV---EVDVGFIHTKGYTTQLLSYANMIPTRDGGVHLSGFRGAYTRA 292

Query: 342 IKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + +YA+    ++        DDL+     ++SV I +P+F GQTK KL++ +A+R V + 
Sbjct: 293 MNQYAKKAGLQKNGQPKPSGDDLLEGLFAVISVKIPQPQFEGQTKGKLLNPEAERAVSSV 352

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    +L  NP  A  + +     ++ R   RK RE V R+  +    LPGKLADC  
Sbjct: 353 VYEKLMDFLESNPRIAKTIYDKAQRAAQAREAARKARELVRRQNPLESDDLPGKLADCQT 412

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 ELFIVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +K   N ++  ++ 
Sbjct: 413 EEPDEAELFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKANLQKALKNNEVRAMIA 472

Query: 519 ALGCRTR-----SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
           A+G   +     + +  + +RY K+I+MTDADVDG+HI +LLLTFFY+ M  +I++ +L+
Sbjct: 473 AIGAGIQGTGDEAHFDVDSVRYHKIILMTDADVDGSHIRTLLLTFFYRFMRPIIDRGYLY 532

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           +  PPL+++  G +S Y  D+E  +  L++    G  K EI RFKGLGEM   QL ET M
Sbjct: 533 IAQPPLYKLKVGRRSEYIFDDEALKAALKKV---GDKKYEIQRFKGLGEMNPEQLWETTM 589

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +   R L +V I   L       +    LMG     R +FI+E A F + + 
Sbjct: 590 NPETRVLKQVTIEDALY----ASEIFEDLMGADVQPRREFIEENAKFAE-LD 636


>gi|228478351|ref|ZP_04062959.1| DNA topoisomerase IV, B subunit [Streptococcus salivarius SK126]
 gi|228250030|gb|EEK09300.1| DNA topoisomerase IV, B subunit [Streptococcus salivarius SK126]
          Length = 649

 Score =  595 bits (1533), Expect = e-168,   Method: Composition-based stats.
 Identities = 235/653 (35%), Positives = 370/653 (56%), Gaps = 34/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ ++I V+L
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGDVIAVTL 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G ++V D+GRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSVSVSDSGRGMPTGMH--AMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R  +++ Q+F  G  P++ LEK  K  ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGSVYRQRFENGGHPVTGLEKIGKAPKSKTGTKVTFMPDASIFSTT 186

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   V    +  +   E      +EEF++  G++ ++    E+
Sbjct: 187 -DFKFNTISERLKESAFLLKNVTMTLTDLRGEEE-----VREEFHYENGVQDFVSYLNED 240

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++  I+             +E A+ + +   +   S+ N + T +GGTHE+G + A+
Sbjct: 241 KETLTPVIYI----DGDQQEFHLELALQYNDGYSDNILSFVNNVRTKDGGTHETGFKSAI 296

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       ++S+ +     +F GQTK KL S  A+ 
Sbjct: 297 TKALNDYARKTGLLKEKDKNLEGSDYREGLSAVISLLVPEEHLQFEGQTKDKLGSPLARP 356

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451
            V++ + +   ++L++N   A+ L+   I+  + R   RK R+ +R     K       G
Sbjct: 357 IVDSIVSEHLTYFLMENGDLASNLVRKAIKARDAREAARKARDASRNGKKNKKDKGLLSG 416

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL       A   EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N+
Sbjct: 417 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 476

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  +D+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 477 EINTMIYTIGAGVGADFNLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536

Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G        YA  +   +++ ++F +       + R+KGLGEM A Q
Sbjct: 537 VYIALPPLYKMSKGKGKKEVVEYAWTDGELEELRQKFGRGAI----LQRYKGLGEMNADQ 592

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET MD   RTL+RV I+     L   +  ++ LMG KA  R ++I++   F
Sbjct: 593 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 641


>gi|319757988|gb|ADV69930.1| topoisomerase IV subunit B [Streptococcus suis JS14]
          Length = 647

 Score =  595 bits (1533), Expect = e-168,   Method: Composition-based stats.
 Identities = 240/653 (36%), Positives = 371/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHH+  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGNGLHHMVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G L+V D GRG+PV  H     K T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLSVSDRGRGMPVGMH--ATGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F + G P++ LEK     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFEQGGKPVTTLEKIGTAPKSKTGTKVTFMPDDTIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L  +V    + ++         E+EE+++  G++ ++    E+
Sbjct: 186 TDFKFNTIAERLKESAFLLKQVTMTLTDER-------TGEQEEYHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++      + E  G     V+ A+ + +   +   S+ N + T +GGTHE+GL++A+
Sbjct: 239 KETLTPV-LYFEGEDAG---FQVQVAMQYNDGYSDNILSFVNNVRTKDGGTHETGLKLAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 VVDGIVSDKLTFFLLENGELASNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    S +  ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E   
Sbjct: 475 EINTMIYTIGAGVGSDFTIEDVNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
            ++  PPL+++++G     K  YA  +   + + ++F K       + R+KGLGEM A Q
Sbjct: 535 GYIALPPLYKMSKGKGKAEKIAYAWSDGELEDLRKDFGK----GFILQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  ++ LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVSVLMGDKVEPRRKWIEDNVKF 639


>gi|254486692|ref|ZP_05099897.1| DNA topoisomerase IV, B subunit [Roseobacter sp. GAI101]
 gi|214043561|gb|EEB84199.1| DNA topoisomerase IV, B subunit [Roseobacter sp. GAI101]
          Length = 653

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 343/654 (52%), Positives = 447/654 (68%), Gaps = 10/654 (1%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              QS+   YDASSI++LE +E VR+RPGMYIGG D++ALHH+ +E+IDN+MDE +AG+A
Sbjct: 6   SGAQSSGKEYDASSIQVLEDMEHVRLRPGMYIGGKDDRALHHMVAEIIDNSMDEAVAGHA 65

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             IE+ L  NG +TV DNGRGIP + HPK P+KS LEII  TL+AGGKF   +YE SGGL
Sbjct: 66  TWIELELHENGHVTVRDNGRGIPTDPHPKDPSKSALEIIFCTLNAGGKFSGDSYETSGGL 125

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALSD L V VAR   +++ +FSRGIP   LEK     N+RGT +TF PD +
Sbjct: 126 HGVGSSVVNALSDHLRVEVARNRELYAMEFSRGIPQGKLEKIGAAPNRRGTSVTFHPDAE 185

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IFG+      ARL  M +SKAYL   V+  W   K   +    P +  F+FPGGL  YL 
Sbjct: 186 IFGN-LTLKPARLFAMARSKAYLFSGVEIRW---KTSQKDGDTPSEATFHFPGGLSDYLN 241

Query: 275 TKLENRSLISSEIF--TGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHE 331
             L+  +  +   F      ++K    G VEWA+ W    +  I SYCNTI T EGGTHE
Sbjct: 242 ETLKGSTSYADAPFGGMVDFKEKFGVPGKVEWAVNWTPSRDGFIQSYCNTIPTPEGGTHE 301

Query: 332 SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           +G   A+ +G+K Y EL  NK+A +I  +DL+     ++S FIREPEF GQTK +L ++D
Sbjct: 302 AGFWAAILKGVKAYGELVGNKKAGTITREDLITGGCALVSCFIREPEFVGQTKDRLATVD 361

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           AQR VENA+RD FD++L  N   A  +L++++ R+EERLRRR+++E  RKTA +KLRLPG
Sbjct: 362 AQRMVENAVRDHFDNWLASNTKSAGAILDFLVLRAEERLRRRQEKETARKTATKKLRLPG 421

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL DC+     GTELFIVEGDSAGGS K ARNR NQA+LPL+GKILNV  A S K+  N 
Sbjct: 422 KLTDCTSKNREGTELFIVEGDSAGGSGKGARNRVNQALLPLKGKILNVLGAASGKLNTNA 481

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I DL +ALG    S++  +DLRY+K+IIMTDADVDGAHIA+LL+TFFY +M  +I+  H
Sbjct: 482 EINDLCEALGVGMGSKFVLDDLRYDKIIIMTDADVDGAHIAALLMTFFYTQMRPMIDAGH 541

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           L+L  PPL+R+TQG K VY  D+  K   LE+    GKGKI++ RFKGLGEM A  LKET
Sbjct: 542 LYLACPPLYRLTQGAKRVYVSDDAEKDLWLEK-GLGGKGKIDLQRFKGLGEMDAKDLKET 600

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            MD + R L+RV + +D  +  +T D + +LMG K + R+++IQE A F++++ 
Sbjct: 601 TMDPSTRKLIRVTVQED--TPGETGDLVERLMGKKPELRYQYIQENAQFVEELD 652


>gi|32448552|gb|AAO16803.1| ParE [Streptococcus pneumoniae]
          Length = 638

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 239/652 (36%), Positives = 362/652 (55%), Gaps = 36/652 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V+++
Sbjct: 1   NYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTIN 60

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G LTV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 61  KDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 118

Query: 163 NALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           N  S  L V + R   I+ Q+F   G P++ L+K     ++K GT++TF PD  IF    
Sbjct: 119 NLSSSWLEVEITRDGAIYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDAGIFST-T 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    + +     A+L   V    +  +         E  EF++  G++ ++    E++
Sbjct: 178 DFKYNTISERLNESAFLLKNVTLSLTDKR-------TDESVEFHYENGVQDFVSYLNEDK 230

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             ++      + E  G     VE A+ + +   +   S+ N + T +GGTHE+GL+ A+T
Sbjct: 231 ETLTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 286

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQRT 395
           + +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+  
Sbjct: 287 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 346

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPGK 452
           V+  + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L GK
Sbjct: 347 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 406

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N++
Sbjct: 407 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 466

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H+
Sbjct: 467 INTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEVGHV 526

Query: 573 FLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           ++  PPL+++++G     +  YA  +   +++ ++F K       + R+KGLGEM A QL
Sbjct: 527 YIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQL 582

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 583 WETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 630


>gi|157151650|ref|YP_001450529.1| DNA topoisomerase IV subunit B [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157076444|gb|ABV11127.1| DNA topoisomerase IV, B subunit [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 649

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 241/653 (36%), Positives = 366/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVSDHGRGMPVGMH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R  T++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMPDDTIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   V+   +  +   E        EF++  G++ ++    E+
Sbjct: 186 TDFKYNTIAERLKESAFLLKNVRLSLTDARTGEE-------VEFHYENGVEDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++      + E+ G     V+ A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KETLTPV-LYFEGEESG---FQVQVALQYNDGYSDNILSFVNNVRTKDGGTHETGLKTAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKAMNDYARKTGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V++ + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 AVDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    S +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E   
Sbjct: 475 EINTMIYTIGAGVGSDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534

Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G        YA  +     +  +F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFGKGAM----LQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|328957567|ref|YP_004374953.1| DNA topoisomerase 4 subunit B [Carnobacterium sp. 17-4]
 gi|328673891|gb|AEB29937.1| DNA topoisomerase 4 subunit B [Carnobacterium sp. 17-4]
          Length = 675

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 233/657 (35%), Positives = 363/657 (55%), Gaps = 35/657 (5%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +  +  Y+  SI++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE ++G+   
Sbjct: 11  PKELNKEYNDDSIQVLEGLEAVRKRPGMYIGSTDARGLHHLVYEIVDNSVDEALSGFGTE 70

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+V+L  +  ++V DNGRG+P+  H       T+++I T LHAGGKF    Y+ SGGLHG
Sbjct: 71  IDVTLHKDNSISVKDNGRGMPIGMH--SSGIPTVQVIFTVLHAGGKFGQGGYKTSGGLHG 128

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           VG SVVNALS+ L VT+ R+   + QKF   G     L+K +    K GT + F+PDP I
Sbjct: 129 VGASVVNALSEWLTVTIIREGVHYQQKFVEGGKAKGSLKKIKTNNEKNGTIVHFKPDPTI 188

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F          L +  +  A+L   ++   + ++         + E FY+  G+K ++  
Sbjct: 189 FTTTN-LSYDVLAERLRESAFLLKGLRITLTDER-------NEQSEVFYYEEGIKEFVSY 240

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             E++  ++      + E        VE++  + +     I S+ N + T +GGTHE+G+
Sbjct: 241 LNEDKDNLTPV-AYFEGENNEI---EVEFSFQYNDGYSETILSFVNNVRTKDGGTHEAGM 296

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390
           + A+T+   +YA       ++  ++   D       ++S+ I E   +F GQTK+KL + 
Sbjct: 297 KTAITKTFNEYARKVNLLKEKEKNLEGTDFREGLAAVISIRIPENLLQFEGQTKSKLGTP 356

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL- 449
            A+  VE  + D  + YL++N   + +L+   ++  E R   RK RE +R    RK    
Sbjct: 357 QARSAVETVVSDQLNFYLIENGDLSQQLIRKALKAREARDAARKAREESRNGKKRKKNDT 416

Query: 450 --PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
              GKL       A   EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + +
Sbjct: 417 LLSGKLTPAQSKNAKRNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKLQDV 476

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N++I  ++  +G     ++   D  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L 
Sbjct: 477 MKNEEISTMIYTIGAGVGPEFDIADCNYDKIIIMTDADTDGAHIQTLLLTFFYRYMKPLF 536

Query: 568 EQKHLFLISPPLFRITQ--GTKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
           E   ++L  PPL+++++  G K    YA  ++   ++ ++F K+      + R+KGLGEM
Sbjct: 537 EAGKVYLALPPLYKLSRGIGKKEKIAYAWTDDELVQVTKDFGKN----YILQRYKGLGEM 592

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            A QL +T M+   RTL+RV+I+         +  ++ LMG K + R K+I+    F
Sbjct: 593 NADQLWDTTMNPETRTLIRVKIDD----AAQAEKRVSVLMGDKVEPRRKWIESHVEF 645


>gi|56963754|ref|YP_175485.1| DNA topoisomerase IV subunit B [Bacillus clausii KSM-K16]
 gi|56909997|dbj|BAD64524.1| DNA topoisomerase IIA subunit B [Bacillus clausii KSM-K16]
          Length = 656

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 238/650 (36%), Positives = 361/650 (55%), Gaps = 32/650 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DE + GY N I+V++ 
Sbjct: 7   EYNEDAIQVLEGLEAVRKRPGMYIGSTDVRGLHHLVYEIVDNAVDEALGGYGNTIKVTIH 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +++ D GRG+PV  H     K T E+I T LHAGGKF    Y  SGGLHGVG SVV
Sbjct: 67  KDQSVSIEDEGRGMPVGMH--RSGKPTPEVIFTVLHAGGKFGQGGYATSGGLHGVGASVV 124

Query: 163 NALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L V + R    ++Q+F + G P++ LEKK K R   GT + F+PD  IF     
Sbjct: 125 NALSEWLEVEIKRDGYRYTQRFEQGGKPVTTLEKKGKTR-ASGTTVRFKPDEGIFST-IQ 182

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F++  L +  +  A+L   V+   +  +   E       E F F  GL+ ++    E + 
Sbjct: 183 FNSEILAERLREAAFLLKGVQIELTDKRPEKE-----LHEVFKFDTGLEAFVDYLNEGKE 237

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
            +   +    +        + ++  A+ E    + S+ N + T +GGTHE G + A+TR 
Sbjct: 238 ALHPVVSFSGSANDIQMDFSFQFHDAYTE---NVLSFVNNVRTRDGGTHELGAKTAMTRI 294

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397
           + ++A       ++  ++   D+      ++SV + E   +F GQTK+KL + +A+  V+
Sbjct: 295 MNEHARKIGVLKEKDKNLDGSDIREGFTAVVSVRVPEAKLQFEGQTKSKLGTPEARSAVD 354

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGKLA 454
             + +   ++L +NP  AT LL+  ++ ++ R   RK RE  R     K +     GKL 
Sbjct: 355 AIVSENLSYFLEENPAVATMLLKKAMKAAQAREAARKAREDARNGKKNKRKDVLLSGKLT 414

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
                     EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A  + I  N++I 
Sbjct: 415 PAQSRNPARNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLDDIMKNEEIR 474

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++  +G    + +   D  Y+KV+IMTDAD DGAHI  LLLTFFY+ M  LI++  +++
Sbjct: 475 TIIHTIGAGVGADFDSADCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIDEGKIYI 534

Query: 575 ISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
             PPL+++++G+    +  YA DE   Q  L++  +       + R+KGLGEM A+QL E
Sbjct: 535 ALPPLYKVSKGSGKKEQVEYAWDENELQAALKKVGRGS----TVQRYKGLGEMNATQLWE 590

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           T MD   RTL+RV +          +  +  LMG K + R K+I+   +F
Sbjct: 591 TTMDPATRTLIRVRLED----AARAEKHVATLMGDKVEPRRKWIESHVAF 636


>gi|322370371|ref|ZP_08044930.1| DNA gyrase, B subunit [Haladaptatus paucihalophilus DX253]
 gi|320550079|gb|EFW91734.1| DNA gyrase, B subunit [Haladaptatus paucihalophilus DX253]
          Length = 638

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 242/650 (37%), Positives = 370/650 (56%), Gaps = 23/650 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + Y A  I++LEGLE VR RP MYIG TD + LHHL  EV+DN++DE +AGY + I+V++
Sbjct: 5   NEYSAGQIQVLEGLEAVRKRPAMYIGSTDSRGLHHLVYEVVDNSIDEALAGYCDSIDVTI 64

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  +++ D+GRGIPV+ H ++ +   LE+ILT LHAGGKFDN +Y++SGGLHGVGISV
Sbjct: 65  HEDNSVSIADDGRGIPVDRHEEY-DMPALEVILTVLHAGGKFDNKSYQVSGGLHGVGISV 123

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK--RGTRITFRPDPKIFGDK 219
           VNALS++  V V R   ++ Q F RG P   +E+   +R+    GT   F PD +IF   
Sbjct: 124 VNALSEKFDVEVKRDGGVWKQTFERGDPAGEMERVRDMRDDEETGTYQRFWPDTEIFET- 182

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  + L    +  A+L+  V    + +++        + + F++ GG++ +++   E 
Sbjct: 183 TDFTYSTLENRLRELAFLNSGVAITLADERD------EEKGDTFHYSGGIREFVEYLNET 236

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHESGLRVAL 338
           ++ + +E+   + E        VE A+   +E    I ++ N I T EGGTH +G + AL
Sbjct: 237 KTALHNEVIYFEDEDDNIQ---VEVAMQATDELQGSIHAFANNINTREGGTHLTGFKTAL 293

Query: 339 TRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  YA           ++  +D+      ++SV   +P+F GQTKTKL + + +  V
Sbjct: 294 TRVVNDYANDNDMLGDLDENLRGEDIREGLTAVISVKHPDPQFEGQTKTKLGNSEVRGIV 353

Query: 397 ENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           E+A+ +    Y  ++P  A  ++ + V      +  ++ +    RK+A+    LPGKLAD
Sbjct: 354 ESAVHEGLSVYFEEHPDTAQAIISKAVEAAKARKAAKKAEELTRRKSALESSALPGKLAD 413

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C       +ELF+VEGDSAGGSAKQAR+R  QA+LPL GK+LNV     +++  N++I +
Sbjct: 414 CQSRDPTKSELFVVEGDSAGGSAKQARDREFQAILPLFGKVLNVEKHRLDRVLENEKIRN 473

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
            + A+G     ++  +D RY K+IIMTDADVDGAHI +L LT  Y+ M  L+E  +++  
Sbjct: 474 FITAIGTGVGEEFDIDDARYHKIIIMTDADVDGAHIRTLYLTLLYRYMRPLLEAGYVYAA 533

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+R+    K+  A  EE ++  + E K  G    ++ RFKGLGEM   QL ET M+ 
Sbjct: 534 QPPLYRVRYRGKTYDAMTEE-ERDEIIEEKCDGNPS-QVQRFKGLGEMNPEQLWETTMNP 591

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             R L ++ I              + LMG     R +FIQ+ A+  + V 
Sbjct: 592 ENRILKQITIED----AAAADKMFSVLMGDAVGPRKQFIQDHATEAEWVD 637


>gi|315194271|gb|EFU24664.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 665

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 240/654 (36%), Positives = 360/654 (55%), Gaps = 31/654 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  +NY   SI++LEGLE VR RPGMYIG TD++ LHHL  E++DN++DEV+ GY N I+
Sbjct: 4   NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 63

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+++ +G +++ DNGRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG
Sbjct: 64  VTINKDGSISIEDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 121

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS+ L V + R   I+ Q F  G   S    K+    K GT++TF+PD  IF  
Sbjct: 122 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 181

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L +  Q  A+L   +K   +  +   E      +E +++  G+K ++    E
Sbjct: 182 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKE-----RQEHYHYEEGIKEFVSYVNE 236

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            + ++  ++ T   E  G     V+ A  + ++    I S+ N + T +GGTHE G + A
Sbjct: 237 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 292

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
           +TR    YA        +  ++  +D+      ++SV I E   +F GQTK+KL + +A+
Sbjct: 293 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR 352

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450
             V++ + D    YL +    +  L++  I+  + R   RK RE  R     K     L 
Sbjct: 353 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 412

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  E I  N
Sbjct: 413 GKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 472

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +     + ++ ED  Y +VIIMTDAD DGAHI  LLLTFF++ M  L++  
Sbjct: 473 EEINTIIHTIRAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 532

Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +F+  PPL+++ +G     +  YA  +E   K+ +E  K       + R+KGLGEM   
Sbjct: 533 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNPE 588

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET M+   RTL+RV++  ++ S K     +  LMG K   R ++I++   F
Sbjct: 589 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVQPRREWIEKHVEF 638


>gi|462227|sp|P34031|GYRB_SPICI RecName: Full=DNA gyrase subunit B
 gi|49348|emb|CAA79523.1| DNA gyrase subunit B [Spiroplasma citri]
 gi|745458|prf||2016285C DNA gyrase:SUBUNIT=B
          Length = 640

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 261/650 (40%), Positives = 378/650 (58%), Gaps = 19/650 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           DNY++ SI+ILEGLE +R RPGMYIG T+ + LHHL  E++DN++DEV+A +AN I++ L
Sbjct: 3   DNYNSESIQILEGLEAIRKRPGMYIGATNARGLHHLVWEIVDNSIDEVLANFANKIKIIL 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +  +TV+DNGRGIP+E HPK    STLE + T LHAGGKFD++TY+ISGGLHGVG SV
Sbjct: 63  NKDESITVIDNGRGIPIEIHPK-TKVSTLETVFTILHAGGKFDSNTYKISGGLHGVGASV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  L V V + N  +  +F  G  +    K+    ++ GT +TF PD KIF +   
Sbjct: 122 VNALSKYLKVEVRKNNKKYVMEFHNGGQILTPIKEVGSTSETGTTVTFLPDEKIFKETTI 181

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F  + +    +   +L+  ++      +E  E+    +   + F  G+K Y+    +   
Sbjct: 182 FSFSTIQNRIKQLVFLNKGLEISLVDLREEDEE----KTVLYQFNNGIKDYVLELNKTIG 237

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
              +++F  +  +       VE+ + + +     I S+CN I T EGGTHE G R+A+ R
Sbjct: 238 TPLNDVFYVEGIEDNI---VVEFGLQYNDNYSENIFSFCNNINTHEGGTHEEGARLAIVR 294

Query: 341 GIKKYAELTQNKRA----ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
            I  Y +   NK           DD+      I+S+   EP++ GQT  KL++ + ++ V
Sbjct: 295 EINNYFKNQINKNNKGNEDKFTWDDIKEGMTIIISIRHPEPQYEGQTNQKLLNSEVKKIV 354

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
            N +      YL++NP +A K++E +    +  +  ++ +E   RK  +    LPGKL+D
Sbjct: 355 SNIVGKGLSSYLLENPEDAKKIIEKISLSLKATIVAQRAKEITRRKIVMDSFSLPGKLSD 414

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C    A   EL+IVEGDSAGGSAK  RNR  QA+LPLRGKILNV  A   KI  N +I  
Sbjct: 415 CETKDAKIAELYIVEGDSAGGSAKSGRNRKFQAILPLRGKILNVEKAKQIKIFENNEINS 474

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ ALG   +  + ++ LRY+KVIIMTDADVDGAHI  LLLTFFY+ M DLIE  ++++ 
Sbjct: 475 IITALGAGIKDNFNDKKLRYQKVIIMTDADVDGAHIRILLLTFFYRYMKDLIENGNIYIA 534

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+++    +  Y + +   +   EE  K  K    I R+KGLGEM   QL ET MD 
Sbjct: 535 QPPLYKVENSNQIRYVYSDNELELYKEELLKQNK-NYTIQRYKGLGEMNPEQLWETTMDP 593

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +R LL+V +N       +     N+LMG   + R KFI+E A ++ ++ 
Sbjct: 594 ERRLLLKVSVNNAF----EANLICNELMGENVEPRKKFIRENAKYVKNLD 639


>gi|301066454|ref|YP_003788477.1| DNA topoisomerase IV subunit B [Lactobacillus casei str. Zhang]
 gi|300438861|gb|ADK18627.1| DNA topoisomerase IV subunit B [Lactobacillus casei str. Zhang]
          Length = 670

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 248/655 (37%), Positives = 365/655 (55%), Gaps = 35/655 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
            A+  Y+ SSI++L GLE VR RPGMYIG TD + LHHL  E++DN++DE +AG+ + I 
Sbjct: 3   KATQAYNDSSIQVLHGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNSVDEALAGFGDEIN 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +  +TV D+GRG+P   HP    K T+E+ILT LHAGGKF+ ++Y+ SGGLHGVG
Sbjct: 63  VTIHADNSVTVQDHGRGMPTGMHP--SGKPTIEVILTVLHAGGKFNQNSYKTSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
            SVVNALS+ L V V R    F + F + G P   L+K  KV    GT ITF+PDP IF 
Sbjct: 121 SSVVNALSESLTVRVVRDKHAFEEHFINGGHPDGSLQKLGKVNEPNGTTITFKPDPTIFQ 180

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F    L +  +  A+L   +    + ++         + + +++P GL ++++   
Sbjct: 181 TTV-FSYDTLAERLRESAFLLKNITINLTDER-------TGKHDSYHYPDGLVSFVKYLN 232

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRV 336
           E +  +S  I   + +K G     V++A  + +   E    + N + T +GGTHE GLR 
Sbjct: 233 EGKDALSQVIN-FEGKKDGI---VVDFAGQYNDGYSENLISFVNNVRTGDGGTHEIGLRS 288

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392
            +TR   ++A       +R  ++   D+     GILSV I E   +F GQTK KL +  A
Sbjct: 289 GMTRAFNEFARKVGLLKERDKNLEGSDVREGFAGILSVRIPEEILQFEGQTKGKLGTPQA 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL--- 449
           +  V+  + D    +L++N  E+ +L+   ++  + R   RK R+ +R    RK      
Sbjct: 349 RTVVDGIVYDKLSTFLMENGEESQELVRKAVKARDAREAARKARDDSRTGRKRKKDQGLL 408

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
            GKL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + I  
Sbjct: 409 SGKLTPAQTKNPKRNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIVK 468

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N++I  ++  +G    + +  +   Y+K+IIMTDAD DGAHI  LLLTFFY+ M  LIE 
Sbjct: 469 NEEINTMIYTIGAGVGADFDLQQANYDKIIIMTDADTDGAHIQILLLTFFYRYMRPLIEA 528

Query: 570 KHLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
             +++  PPL+R+ +G    TK  YA  +E   K  +   K       ++RFKGLGEM A
Sbjct: 529 GRIYIALPPLYRLQKGAGAKTKISYAWTDEELAKETKAMGK----GYTLTRFKGLGEMNA 584

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            QL ET M+   RTL+RV I+      +  +  +  LMG + + R ++I+    F
Sbjct: 585 DQLWETTMNPETRTLIRVRIDD----AQLAERRVTTLMGDRVEPRREWIEHNVKF 635


>gi|323351521|ref|ZP_08087175.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis
           VMC66]
 gi|322122007|gb|EFX93733.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis
           VMC66]
          Length = 649

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 241/653 (36%), Positives = 368/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVADHGRGMPVGKH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R  T++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMPDDTIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   V+   + ++   E        EF++  G++ ++    E+
Sbjct: 186 TDFKYNTIAERLKESAFLLKNVRLSLTDERTGEE-------VEFHYENGVEDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  ++      + E+ G     V+ A+ + +     I S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KETLTPV-LYFEGEESG---FQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEAHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V++ + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 AVDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E   
Sbjct: 475 EINTMIYTIGAGVGTDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534

Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G        YA  +     +  +F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFGKGAM----LQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+ + RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPDTRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|126652425|ref|ZP_01724598.1| DNA topoisomerase IV subunit B [Bacillus sp. B14905]
 gi|126590846|gb|EAZ84960.1| DNA topoisomerase IV subunit B [Bacillus sp. B14905]
          Length = 658

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 241/659 (36%), Positives = 356/659 (54%), Gaps = 35/659 (5%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
             N+ +   Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DE +AG+ 
Sbjct: 1   MTNKQSPSVYNDDAIQVLEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALAGFG 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I V +  +  ++V D GRG+P   H     K T EII T LHAGGKF    Y+ SGGL
Sbjct: 61  SHIIVKIHKDQSISVRDFGRGMPTGMHKM--GKPTPEIIFTVLHAGGKFGQGGYKTSGGL 118

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDP 213
           HGVG SVVNALS  L VT+ R    + Q+F  G  P++ LE+  + + + GT + F PD 
Sbjct: 119 HGVGSSVVNALSTFLEVTIHRDGKKYRQRFEHGGHPVTTLEEIGQTK-QTGTLVHFLPDE 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF     ++   L +  +  A+L   +K     ++E        + + F++  G++ ++
Sbjct: 178 TIFSVT-KYNYDTLAERLRESAFLLKGLKIELIDERE------EGKNDMFFYENGIEAFV 230

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
               E + ++    +    +        VE+A  + +     I S+ N + T +GGTHE+
Sbjct: 231 AYLNEEKDVLHPVKYVEGIQDD----IEVEFAFQYNDGYSETILSFVNNVRTRDGGTHET 286

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLV 388
           G + ALTR   +YA        +  ++   D+      I+SV I E   +F GQTK KL 
Sbjct: 287 GAKAALTRVFNEYARKIGLLKDKDKNLEGTDIREGLAAIVSVRIPEHLLQFEGQTKGKLG 346

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK-- 446
           + +A+  V++ + +   + L +N   +  L+   I   + R   RK RE  R     K  
Sbjct: 347 TSEARSAVDSVVSEQILYVLEENAELSASLVRKAIRAQQVREAARKAREDARNGKKNKKG 406

Query: 447 -LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              L GKL       A   EL++VEGDSAGGSAKQ R+R+ QA+LPLRGK++N   A  +
Sbjct: 407 STILSGKLTPAQSRNAARNELYLVEGDSAGGSAKQGRDRTFQAILPLRGKVINTEKAKLQ 466

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
            I  N++I  ++ A+G    + +  ED  Y KV+IMTDAD DGAHI  LLLTFFY+ M  
Sbjct: 467 DIMKNEEISTIIHAIGAGVGTDFAVEDSAYNKVVIMTDADTDGAHIQVLLLTFFYRYMRP 526

Query: 566 LIEQKHLFLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
           LIE   +F+  PPL+++++G   K V  YA  E   QK +++  K       + R+KGLG
Sbjct: 527 LIEAGKVFIALPPLYKVSKGTGKKEVIEYAWTENDLQKAIKQVGK----GYILQRYKGLG 582

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           EM A QL +T M+ + RTL+RV I          +  +  LMG K + R K+I+    F
Sbjct: 583 EMNADQLWDTTMNPDTRTLIRVTIEDG----ARAERRVTTLMGDKVEPRRKWIEANVDF 637


>gi|325689651|gb|EGD31655.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis
           SK115]
          Length = 649

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 242/653 (37%), Positives = 368/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVADHGRGMPVGKH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R  T++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMPDDTIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   V+   + ++   E        EF++  G++ ++    E+
Sbjct: 186 TDFKYNTIAERLKESAFLLKNVRLSLTDERTDEE-------VEFHYENGVEDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  ++      + E+ G     V+ A+ + +     I S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KETLTPV-LYFEGEESG---FQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEAHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V++ + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 AVDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    S +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E   
Sbjct: 475 EINTMIYTIGAGVGSDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534

Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G        YA  +     +  +F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFGKGAM----LQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+ + RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPDTRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|319946623|ref|ZP_08020857.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           australis ATCC 700641]
 gi|319746671|gb|EFV98930.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           australis ATCC 700641]
          Length = 649

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 253/658 (38%), Positives = 377/658 (57%), Gaps = 24/658 (3%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +     ++    YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +A
Sbjct: 2   TEELKQETTGQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+A+ IEV ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++S
Sbjct: 62  GFASHIEVFIEADNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVS 120

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG SVVNALS +L V V +   I  Q++ RG  ++ LE   +  ++ GT + F P
Sbjct: 121 GGLHGVGSSVVNALSTQLDVHVHKNGQIHYQEYKRGQVVADLEVIGET-DRTGTTVHFTP 179

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           DP+IF +   FD  +L K  Q  A+L+  ++   +  +E  E     + +++++ GG+ +
Sbjct: 180 DPEIFTETTVFDFDKLNKRIQELAFLNRGLRISITDKREGQE-----QTKDYHYEGGIAS 234

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           Y++   EN+ +I         E       TVE A+ +       + S+ N I T EGGTH
Sbjct: 235 YVEYINENKDVIFETPIYTDGELDDI---TVEVAMQYTTGYHETVMSFANNIHTHEGGTH 291

Query: 331 ESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           E G R ALTR I  YA   +  +    ++  +D+      ++SV    P+F GQTKTKL 
Sbjct: 292 EQGFRTALTRVINDYARKNKLLKDNEENLTGEDVREGLTAVISVKHPNPQFEGQTKTKLG 351

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKL 447
           + +  +       D F  +L++NP  A K++E  ++        +R +    +K+ +   
Sbjct: 352 NSEVVKITNRLFSDAFSDFLLENPQIAKKIVEKGILAAKARVAAKRAREVTRKKSGLEIS 411

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADCS N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI
Sbjct: 412 NLPGKLADCSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKI 471

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N++I  L  A+G    +++     RY+K++IMTDADVDGAHI +LLLT  Y+ M  ++
Sbjct: 472 LANEEIRSLFTAMGTGFGAEFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVL 531

Query: 568 EQKHLFLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGE 622
           E  ++++  PP++ +  G++   Y       E    + LE +   G+ K  I R+KGLGE
Sbjct: 532 EAGYVYIAQPPIYGVKVGSEIKEYIQPGANQEAELAEALERYS-EGRSKPTIQRYKGLGE 590

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           M   QL ET M+   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 591 MDDHQLWETTMNPEHRLMARVTVDD----AAEADKIFDMLMGDRVEPRREFIEENAEY 644


>gi|125718052|ref|YP_001035185.1| DNA topoisomerase IV subunit B [Streptococcus sanguinis SK36]
 gi|125497969|gb|ABN44635.1| Topoisomerase IV subunit B, putative [Streptococcus sanguinis SK36]
          Length = 649

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 241/653 (36%), Positives = 368/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVADHGRGMPVGKH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R  T++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMPDDTIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   V+   + ++   E        EF++  G++ ++    E+
Sbjct: 186 TDFKYNTIAERLKESAFLLKNVRLSLTDERTGEE-------VEFHYENGVEDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  ++      + E+ G     V+ A+ + +     I S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KETLTPV-LYFEGEESG---FQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEAHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V++ + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 AVDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMSDILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E   
Sbjct: 475 EINTMIYTIGAGVGTDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534

Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G        YA  +     +  +F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFGKGAM----LQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+ + RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPDTRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|328949784|ref|YP_004367119.1| DNA gyrase, B subunit [Marinithermus hydrothermalis DSM 14884]
 gi|328450108|gb|AEB11009.1| DNA gyrase, B subunit [Marinithermus hydrothermalis DSM 14884]
          Length = 637

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 255/654 (38%), Positives = 356/654 (54%), Gaps = 29/654 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             YDASSI++L+GLE VR RP MYI GT     H L SE++DNA+DE +AGYAN I+V+L
Sbjct: 2   STYDASSIKVLKGLEGVRKRPAMYIAGTGTDGYHQLLSEILDNAVDEALAGYANEIKVTL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G  +V DNGRGIPV   P    +  +E+I T LHAGGKF+   Y++SGGLHGVG SV
Sbjct: 62  HADGSASVEDNGRGIPVGIMP-GEGRPAVEVIYTELHAGGKFEEGAYKVSGGLHGVGASV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPDPKIFGDKA 220
           VNALS    V V R    +  +FSRG  + PL +         GTR+ F PD  IF    
Sbjct: 121 VNALSAWTVVEVFRDGKHYRIQFSRGRVVEPLTELGPAPKHKTGTRVHFLPDATIFEPGL 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD  R+ +  +  ++L+G +K     +++  E       E F+  GG+ ++ +   E  
Sbjct: 181 EFDFRRVRRRVREVSFLAGGLKIILKDERKGKE-------EVFHDKGGVASFAKALAEGE 233

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
            L+  +      + +      V+  +   +       +Y N I T +GG H SG R A T
Sbjct: 234 ELLYDKPVRLHGQVEDV---EVDVGLIHTKGYTTELLTYANMIPTRDGGVHLSGFRTAYT 290

Query: 340 RGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R + KYA+     +        +DL+     ++SV I +P+F GQTK KL++ +AQ  V 
Sbjct: 291 RALNKYAQRAGLVKNGQPTPSGEDLLEGLFAVISVKIPQPQFEGQTKGKLLNPEAQSAVT 350

Query: 398 NALRDPFDHYLVQNPIEAT-KLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
             + D    +L +NP  A     + +         R+ +  V R+  +    LPGKLADC
Sbjct: 351 KVVYDQLMEHLERNPRVAKLIYEKALRAAQAREAARKARELVRRQNPLESDDLPGKLADC 410

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
                   ELFIVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +K   N +I  +
Sbjct: 411 QTENPDEAELFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKANLQKALKNNEIRAM 470

Query: 517 VQALGCRT-----RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           V A+G           +  E +RY K+I+MTDADVDG+HI +LLLTFFY+ M  +IE  +
Sbjct: 471 VAAIGAGIDGTGQDGHFDLESVRYHKIILMTDADVDGSHIRTLLLTFFYRYMRPVIEAGY 530

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           L++  PPL+R+  G K  Y +D+E  +K L   +       EI RFKGLGEM   QL ET
Sbjct: 531 LYIAQPPLYRLKVGRKIEYVYDDETLRKKLAALEGKP---YEIQRFKGLGEMNPEQLWET 587

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            M+   R L +V I   L    +  +   +LMG++   R +FI+E A F + + 
Sbjct: 588 TMNPETRVLRQVTIEDAL----EANEIFERLMGSEVAPRREFIEENARFAE-LD 636


>gi|329733638|gb|EGG69966.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 665

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 241/654 (36%), Positives = 362/654 (55%), Gaps = 31/654 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  +NY   SI++LEGLE VR RPGMYIG TD++ LHHL  E++DN++DEV+ GY N I+
Sbjct: 4   NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 63

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+++ +G +++ DNGRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG
Sbjct: 64  VTINKDGSISIDDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 121

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS+ L V + R   I+ Q F  G   S    K+    K GT++TF+PD  IF  
Sbjct: 122 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 181

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L +  Q  A+L   +K   +  +   E      +E +++  G+K ++    E
Sbjct: 182 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKE-----RQEHYHYEEGIKEFVSYVNE 236

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            + ++  ++ T   E  G     V+ A  + ++    I S+ N + T +GGTHE G + A
Sbjct: 237 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 292

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
           +TR    YA        +  ++  +D+      ++SV I E   +F GQTK+KL + +A+
Sbjct: 293 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR 352

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450
             V++ + D    YL +    +  L++  I+  + R   RK RE  R     K     L 
Sbjct: 353 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 412

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  E I  N
Sbjct: 413 GKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 472

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    + ++ ED  Y +VIIMTDAD DGAHI  LLLTFF++ M  L++  
Sbjct: 473 EEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 532

Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +F+  PPL+++ +G     +  YA  +E   K+ +E  K       + R+KGLGEM   
Sbjct: 533 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNPK 588

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET M+   RTL+RV+++ ++ S K     +  LMG K   R ++I++   F
Sbjct: 589 QLWETTMNPETRTLIRVQVDDEVRSSKR----VTTLMGDKVQPRREWIEKHVEF 638


>gi|22537312|ref|NP_688163.1| DNA topoisomerase IV subunit B [Streptococcus agalactiae 2603V/R]
 gi|22534182|gb|AAN00036.1|AE014244_13 DNA topoisomerase IV, B subunit [Streptococcus agalactiae 2603V/R]
          Length = 653

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 236/651 (36%), Positives = 365/651 (56%), Gaps = 32/651 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY   +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ N I+V ++
Sbjct: 14  NYGDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGNRIDVIIN 73

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G +TV D+GRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 74  KDGSITVTDHGRGMPTGMH--AMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSVV 131

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           NALS  L V + R   I+ Q+F  G  P++ L+K     ++K GT ++F PD  +F    
Sbjct: 132 NALSSWLEVEIIRDGAIYRQRFENGGKPVTTLKKIGTAPKSKSGTSVSFMPDQSVFSTI- 190

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    + +  +  A+L   V    + ++         E  EF++  G++ +++   E++
Sbjct: 191 DFKFNTIAERLKESAFLLKNVTLTLTDNRSE-----EAEHLEFHYENGVQDFVEYLNEDK 245

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
             ++  +F    E++      +++   + +    I S+ N + T +GGTHE+GL+ A+T+
Sbjct: 246 ETLTPIMFFEGEEQEFHIEVALQYNDGFSDN---ILSFVNNVRTKDGGTHETGLKSAITK 302

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQRTV 396
            +  YA  T    ++  ++   D       ILS+ +     +F GQTK KL S  A+  V
Sbjct: 303 SMNDYARKTGLLKEKDKNLEGSDYREGLSAILSILVPEEHLQFEGQTKDKLGSPLARPIV 362

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGKL 453
           +  + +   ++L++N   A+ L+   I+  + R   RK R+ +R     K       GKL
Sbjct: 363 DGIVSEKLTYFLMENGDLASNLIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSGKL 422

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                  A   EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN A A    I  N++I
Sbjct: 423 TPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMADIIKNEEI 482

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++  +G      +  +D+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E+ H++
Sbjct: 483 NTMIHTIGAGVGPDFNLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGHVY 542

Query: 574 LISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G        YA  +   +++ ++F K       + R+KGLGEM A QL 
Sbjct: 543 IALPPLYKMSKGKGKKEIVEYAWTDIELEELRQKFGKGSL----LQRYKGLGEMNADQLW 598

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV I      L   +  +N LMG K   R ++I++   F
Sbjct: 599 ETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVPPRRQWIEDNVKF 645


>gi|307706405|ref|ZP_07643215.1| DNA topoisomerase IV, B subunit [Streptococcus mitis SK321]
 gi|307618192|gb|EFN97349.1| DNA topoisomerase IV, B subunit [Streptococcus mitis SK321]
          Length = 647

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 240/653 (36%), Positives = 365/653 (55%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   I+ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGAIYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V    +  +         E  EF++  G++ ++    E+
Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++      + E  G     VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KETLTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 VVDGMVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +++ ++F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L +T M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWKTTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|285817032|gb|ADC37519.1| Topoisomerase IV subunit B [Staphylococcus aureus 04-02981]
 gi|312829750|emb|CBX34592.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus ECT-R 2]
          Length = 665

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 241/654 (36%), Positives = 363/654 (55%), Gaps = 31/654 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  +NY   SI++LEGLE VR RPGMYIG TD++ LHHL  E++DN++DEV+ GY N I+
Sbjct: 4   NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 63

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+++ +G +++ DNGRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG
Sbjct: 64  VTINKDGSISIEDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 121

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS+ L V + R  +I+ Q F  G   S    K+    K GT++TF+PD  IF  
Sbjct: 122 ASVVNALSEWLEVEIHRDGSIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 181

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L +  Q  A+L   +K   +  +   E      +E +++  G+K ++    E
Sbjct: 182 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKE-----RQEHYHYEEGIKEFVSYVNE 236

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            + ++  ++ T   E  G     V+ A  + ++    I S+ N + T +GGTHE G + A
Sbjct: 237 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 292

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
           +TR    YA        +  ++  +D+      ++SV I E   +F GQTK+KL + +A+
Sbjct: 293 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR 352

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450
             V++ + D    YL +    +  L++  I+  + R   RK RE  R     K     L 
Sbjct: 353 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 412

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  E I  N
Sbjct: 413 GKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 472

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    + ++ ED  Y +VIIMTDAD DGAHI  LLLTFF++ M  L++  
Sbjct: 473 EEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 532

Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +F+  PPL+++ +G     +  YA  +E   K+ +E  K       + R+KGLGEM + 
Sbjct: 533 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNSE 588

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET M+   RTL+RV++  ++ S K     +  LMG K   R ++I++   F
Sbjct: 589 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVQPRREWIEKHVEF 638


>gi|323444006|gb|EGB01617.1| DNA topoisomerase IV subunit B [Staphylococcus aureus O46]
          Length = 663

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 240/654 (36%), Positives = 360/654 (55%), Gaps = 31/654 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  +NY   SI++LEGLE VR RPGMYIG TD++ LHHL  E++DN++DEV+ GY N I+
Sbjct: 2   NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+++ +G +++ DNGRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG
Sbjct: 62  VTINKDGSISIEDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS+ L V + R   I+ Q F  G   S    K+    K GT++TF+PD  IF  
Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDGTIFKA 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L +  Q  A+L   +K   +  +   E      +E +++  G+K ++    E
Sbjct: 180 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKE-----RQEHYHYEEGIKEFVSYVNE 234

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            + ++  ++ T   E  G     V+ A  + ++    I S+ N + T +GGTHE G + A
Sbjct: 235 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 290

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
           +TR    YA        +  ++  +D+      ++SV I E   +F GQTK+KL + +A+
Sbjct: 291 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR 350

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450
              ++ + D    YL +    +  L++  I+  + R   RK RE  R     K     L 
Sbjct: 351 SAADSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 410

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  E I  N
Sbjct: 411 GKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 470

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    + ++ ED  Y +VIIMTDAD DGAHI  LLLTFF++ M  L++  
Sbjct: 471 EEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 530

Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +F+  PPL+++ +G     +  YA  +E   K+ +E  K       + R+KGLGEM   
Sbjct: 531 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNPE 586

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET M+   RTL+RV++  ++ S K     +  LMG K   R ++I++   F
Sbjct: 587 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVQPRREWIEKHVEF 636


>gi|313664969|ref|YP_004046840.1| DNA gyrase, B subunit [Mycoplasma leachii PG50]
 gi|312949334|gb|ADR23930.1| DNA gyrase, B subunit [Mycoplasma leachii PG50]
          Length = 634

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 256/649 (39%), Positives = 381/649 (58%), Gaps = 21/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S  Y A SI++L+GLE VR RPGMYIG T +  LHHL  E++DN++DE +AGYA+LI V+
Sbjct: 2   SQEYSAESIKVLKGLEAVRTRPGMYIGSTSKTGLHHLVWEILDNSIDEAMAGYADLINVT 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +     + + DNGRGIPV  +     KS L ++ T LHAGGKFD+ TY+ISGGLHGVG S
Sbjct: 62  ITKENEVIIQDNGRGIPVGINS-DTKKSALSLVFTQLHAGGKFDSETYKISGGLHGVGAS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  + V V R N  + Q FS G       ++    + RGT++ F+PDP+IF +  
Sbjct: 121 VVNALSLYVEVEVYRNNIHYHQLFSEGGTKESELQQLGQTDLRGTKVKFKPDPEIFKETV 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   +    +  A+L+  +K   + ++       I +  E+ F  G+  Y++ K E +
Sbjct: 181 VFDYEVIKNKVKQLAFLNKGLKITLTDER-------IEKTVEYLFLNGILDYIKEKNETK 233

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + I+  IF   ++ +      VE A+ +  +    I ++ N I T EGGTHE GL+ AL 
Sbjct: 234 NKINPNIFYVDSKYENI---EVEMALQYNSDYQENIITFVNNINTHEGGTHEDGLKQALI 290

Query: 340 RGIKKYAE--LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I +YA+  +  NK       DD+    + ILSV   +P++ GQTKTKL + DA+  V 
Sbjct: 291 RDINRYADTVIKNNKTPSKFSWDDIKEGMMCILSVRHTDPQYEGQTKTKLSNPDAKEAVN 350

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADC 456
             + + F+ +L+++P +A  +L+  +   + R+  ++ RE   RK+A+    LPGKLADC
Sbjct: 351 IIIGNAFEEFLLKSPEDAKAILDKNVNAQKARIAAQRAREETRRKSALDSFSLPGKLADC 410

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
               ++  EL++VEGDSAGGSAK  RNR  QA+LPLRGK+LNV      +  +N +I  +
Sbjct: 411 ETKDSNIAELYLVEGDSAGGSAKTGRNRKFQAILPLRGKVLNVERVTEARAFSNNEIKSI 470

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           V A+G   + +     LRY+K++IMTDADVDGAHI +LLLTFFY+ M  L+   H+++  
Sbjct: 471 VTAVGTGIKEELDLSKLRYKKIVIMTDADVDGAHIRTLLLTFFYRYMKPLVANGHIYIAQ 530

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL++I  G K  YA+ +    ++     +    K  I R+KGLGEM   QL ET MD  
Sbjct: 531 PPLYKIEAGKKIAYAYTDNQLDELKN--NEFNNLKYTIQRYKGLGEMDPLQLWETTMDPQ 588

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +RT+L++ +           +  + LMG   + R  +IQ+ A F++++ 
Sbjct: 589 QRTMLQISLEDAT----LANEVFSDLMGEDPELRKIYIQDNAKFVENID 633


>gi|307298739|ref|ZP_07578542.1| DNA gyrase, B subunit [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915904|gb|EFN46288.1| DNA gyrase, B subunit [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 631

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 253/649 (38%), Positives = 373/649 (57%), Gaps = 24/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           SD Y+A +I+IL+GL+PVR RPGMYIG T +  LHHL  E++DN++DE + G+ + I + 
Sbjct: 2   SDLYNAQNIKILKGLDPVRKRPGMYIGSTGKSGLHHLVYEIVDNSIDEAMGGFCDRINIV 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +G + V DNGRGIP++ HP     S LE+++TTLHAGGKF   +Y+ISGGLHGVG S
Sbjct: 62  ITEDGSVIVSDNGRGIPIDIHP-DTGTSALEVVMTTLHAGGKFSKDSYKISGGLHGVGAS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ + V V     I+ QK+ RG  L+P+E   +  N+ GT  +F+PDP +F    
Sbjct: 121 VVNALSEWMIVEVMVDGKIYRQKYERGKALAPVEVVGET-NETGTVTSFKPDPLVFTV-T 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   L    +  AYL+G +K  +   +   ++        ++F GG+  +++   +N+
Sbjct: 179 DFDFDILEARFKELAYLNGGIKITFEDRRIGEKRS-------YHFEGGIVEFVKALTKNK 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
             I  +    +          ++ A+ +      +I ++ N I T EGGTH +G +  LT
Sbjct: 232 KSIHKDPIYLEGTYNDV---KIQLAMQYTSSYDEDILTFVNNIKTIEGGTHLTGFKTVLT 288

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           + +            +  ++  +DL      ILSVF++EP+F GQTK KL + +A   V 
Sbjct: 289 KTMNDVGRKHNVLKDKDPNLQGEDLREGLSAILSVFVKEPQFEGQTKAKLGNDEAFEAVM 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADC 456
             +++  + Y   N  +   +L   +E S  RL  +K RE+  RK A+    LPGKLADC
Sbjct: 349 KVVKEKLEEYFDYNQKDLKAILSKALEASRARLAAKKAREMVRRKNALENTTLPGKLADC 408

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
                  TE+FIVEGDSAGGSAK AR+R  QA+LPLRGKILNV  AG +++  ++ I ++
Sbjct: 409 ISENLDETEIFIVEGDSAGGSAKMARSRETQAILPLRGKILNVEKAGLDRMLKSETISNI 468

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + ALG      +  ++LRY K+IIMTDADVDGAHI +LLLT FY+ M  LI    +++  
Sbjct: 469 IVALGTGMGEDFEIKNLRYGKIIIMTDADVDGAHITTLLLTLFYRYMTPLITNGKVYVAQ 528

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
            PL++I    +  Y + +E     L+E   H   K+  SRFKGLGEM   QL ET M+ N
Sbjct: 529 APLYKIELNRQKHYFYSDEELTTFLKE---HSDRKLNYSRFKGLGEMNPEQLWETTMNPN 585

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            R L+++ I       ++       LMG++ +ER  FIQ  A  I ++ 
Sbjct: 586 DRKLVKITIED----AEEADRVFTILMGSEVEERRSFIQRHALSISNLD 630


>gi|261749362|ref|YP_003257047.1| DNA gyrase subunit B [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
 gi|261497454|gb|ACX83904.1| DNA gyrase subunit B [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
          Length = 642

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 269/653 (41%), Positives = 386/653 (59%), Gaps = 31/653 (4%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            + + +Y A SI+ LEG+E +R+RP MYIG    + LHHL  EVIDN++DE +AGY N I
Sbjct: 2   SNKNTDYTADSIQSLEGIEHIRLRPSMYIGDVGIRGLHHLVCEVIDNSVDESLAGYCNKI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V++  NGF+TV+DNGRGIP++ H K   KS LE+++T + AGGKFD ++Y++SGGLHGV
Sbjct: 62  WVTIHKNGFITVLDNGRGIPIDIHKK-EGKSALEVVMTKIGAGGKFDKNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           GIS VNALS  L VTV R   I+ Q++ RG P+  ++   +  + +GT+I +  D  IF 
Sbjct: 121 GISCVNALSKRLIVTVYRNGKIYQQEYLRGTPIDRVQCLGET-HLQGTKIHYLADNSIFN 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               +    L    +  A+L+  +      ++   E       E+F+   GLK YL    
Sbjct: 180 S-ITYHYEILSTRLKELAFLNKGLHLFLKDERNNIE-------EDFFSKNGLKEYLSILD 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           +N+  +   I   + EK+ T    VE A+ +      +I SY N I T EGGTH SG R 
Sbjct: 232 KNQESLIRNIIFIEGEKEDTI---VEVAMQYNTSFKEKIYSYVNNINTSEGGTHISGFRR 288

Query: 337 ALTRGIKKYA-----ELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           ALTR  KKY           K  + +  DD       I+S+ + EP+F GQTKTKL + +
Sbjct: 289 ALTRTFKKYTDGLLSNKDNKKDKVDLTGDDFREGLTAIISIRVMEPQFEGQTKTKLSNHE 348

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLP 450
               V+  + +  + YL +NP E  K+++ VI  ++ R   +K RE+ +K + I    LP
Sbjct: 349 VGGIVDKIVGEMLNSYLEENPSERRKIIDKVILSAKARQAAKKARELIQKKSPIYNSILP 408

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS N     E+++VEGDSAGG+AKQ R+RS QA+LPLRGKILNV  A   KI  N
Sbjct: 409 GKLADCSFNNPENCEIYLVEGDSAGGTAKQGRDRSFQAILPLRGKILNVEKAMQYKIFEN 468

Query: 511 QQIMDLVQALGCRT-----RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           ++I ++  +LG              + LRY K+IIMTDAD+DG+HI++L+LT F++ M  
Sbjct: 469 EEIRNIFTSLGVSIGTEEDPKNLNVKKLRYNKIIIMTDADIDGSHISTLILTLFFRYMKP 528

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           LIE+ H+++ +PPL+ I +G  S YA  +E ++KIL+   +  + KI I R+KGLGEM A
Sbjct: 529 LIEKGHIYIATPPLYLIRKGNHSQYAWSDEEREKILQRLGR--RKKINIQRYKGLGEMNA 586

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
            QL ET M+  KRTL +V I     +L +     + LMG +   R  FI++ A
Sbjct: 587 EQLWETTMNPKKRTLRKVHIE----NLSEADKIFSILMGEEVPPRRSFIEKNA 635


>gi|306833366|ref|ZP_07466493.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus bovis ATCC
           700338]
 gi|304424136|gb|EFM27275.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus bovis ATCC
           700338]
          Length = 649

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 237/653 (36%), Positives = 369/653 (56%), Gaps = 34/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ N I+V +
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLVWEIVDNAVDEALSGFGNQIDVII 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G +TV D GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NSDGSVTVSDQGRGMPTGKH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMPDDTIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   V    + ++         E  EF++  G++ +++   E+
Sbjct: 186 IDFKFNTIAERLKESAFLLKDVTLTLTDNR-----PEEAEHLEFHYENGVQDFVEYLNED 240

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++  I     ++       VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 241 KETLTPVISVTGEDQN----FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 296

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  +    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 297 TKAMNDYARKSGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARP 356

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + +   ++L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 357 IVDGIVSEKLTYFLLENGEIASNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 416

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN A A    I  N+
Sbjct: 417 KLTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMSDIVKNE 476

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    +++  E+  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 477 EINTMIYTIGAGVGAEFNVENSNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 536

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +++ ++F K      ++ R+KGLGEM A Q
Sbjct: 537 VYIALPPLYKMSKGKGRKEQVEYAWTDGELEELRQKFGK----GAQLQRYKGLGEMNADQ 592

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 593 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 641


>gi|13541372|ref|NP_111060.1| DNA gyrase subunit B [Thermoplasma volcanium GSS1]
 gi|14324756|dbj|BAB59683.1| DNA gyrase subunit b [Thermoplasma volcanium GSS1]
          Length = 641

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 266/658 (40%), Positives = 372/658 (56%), Gaps = 35/658 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           DNYD+S I+ILEGL+ VR  PGMYIG TD + LHHL  EV+DN++DE +AG+ + I V +
Sbjct: 4   DNYDSSQIQILEGLKAVRKVPGMYIGSTDTRGLHHLVYEVVDNSVDESVAGFCSNIYVKI 63

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G + V D+GRGIPV+ HPK+ N+  LEI+LT LH+G KFD   Y+I+GGLHGVG+ V
Sbjct: 64  GKDGSVLVEDDGRGIPVDIHPKY-NRPGLEIVLTELHSGAKFDKKVYKITGGLHGVGVHV 122

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-----------NKRGTRITFR 210
           VNALS +L   V R   I+ + F +GIP   L+  E                 GT I F 
Sbjct: 123 VNALSSKLIAVVKRDGHIYYEVFEKGIPKEGLKTVEDKSVLEKFGIDIKYPGHGTIIKFY 182

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PDP+IF     F    +L      AYL+ ++      ++           E  ++ GG+ 
Sbjct: 183 PDPEIFETT-EFSKETILARVTDLAYLNPQLTITLEDER-------TGSLETLHYEGGIV 234

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGT 329
             ++   E ++LI   ++     ++      VE+A  +  +    + SY N I T EGGT
Sbjct: 235 ELVKHLSEGKNLIVDPLYW----REEVDHYIVEFAFTYTTDVQEILQSYVNNISTPEGGT 290

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISI-ISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           H +G    L+R I+ YA      + +     DD+    + +L + +++P+F GQTK KL 
Sbjct: 291 HVAGFHQGLSRAIQDYARSNGKIKGVDDITGDDVKEGVIAVLHIKMQDPQFEGQTKAKLG 350

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447
           +   +  V++        +L  NP  A  +L  V+  +  R   RK +E V RK+A+   
Sbjct: 351 NSKVRGIVQSITSKFVKTFLETNPHIADLILSRVLSAAAAREASRKAKELVRRKSALEGG 410

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADCS N  + TEL+IVEGDSAGGSAKQARNR  QAVLPLRGKILNV  A   K+
Sbjct: 411 GLPGKLADCSSNDPNNTELYIVEGDSAGGSAKQARNRQYQAVLPLRGKILNVEKASDMKV 470

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N+ I DLV A+G   +       LRY K+IIMTDADVDGAHI +LLLTFF++    LI
Sbjct: 471 VENEIIKDLVVAIGTGVKEDINPRKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYARSLI 530

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           E  +++   PPL+RI +G    Y + EE K K+  EF  +      I RFKGLGEM   Q
Sbjct: 531 ENGNVYFAEPPLYRIQKGQDVRYVYTEEEKDKLSIEFGPNAI----IQRFKGLGEMNPEQ 586

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           L +T M+   R L++V I       ++ +   + LMG K + R +FI+E A + +++ 
Sbjct: 587 LWDTTMNPKTRKLVQVTIQD----AEEAERIFSILMGEKVEPRRRFIEENAVYAENID 640


>gi|83319520|ref|YP_424038.1| DNA gyrase, B subunit [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
 gi|83283406|gb|ABC01338.1| DNA gyrase, B subunit [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
          Length = 634

 Score =  594 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 256/649 (39%), Positives = 381/649 (58%), Gaps = 21/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S  Y A SI++L+GLE VR RPGMYIG T +  LHHL  E++DN++DE +AGYA+LI V+
Sbjct: 2   SQEYSAESIKVLKGLEAVRTRPGMYIGSTSKTGLHHLVWEILDNSIDEAMAGYADLINVT 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +     + + DNGRGIPV  +     KS L ++ T LHAGGKFD+ TY+ISGGLHGVG S
Sbjct: 62  ITKENEVIIQDNGRGIPVGINS-DTKKSALSLVFTQLHAGGKFDSETYKISGGLHGVGAS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  + V V R N  + Q FS G       ++    + RGT++ F+PDP+IF +  
Sbjct: 121 VVNALSLYVEVEVYRNNIHYHQLFSEGGTKESELQQLGHTDLRGTKVKFKPDPEIFKETV 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   +    +  A+L+  +K   + ++       I +  E+ F  G+  Y++ K E +
Sbjct: 181 VFDYEVIKNKVKQLAFLNKGLKITLTDER-------IEKTVEYLFLNGILDYIKEKNETK 233

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + I+  IF   ++ +      VE A+ +  +    I ++ N I T EGGTHE GL+ AL 
Sbjct: 234 NKINPNIFYVDSKYEDI---EVEMALQYNSDYQENIITFVNNINTHEGGTHEDGLKQALI 290

Query: 340 RGIKKYAE--LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I +YA+  +  NK       DD+    + ILSV   +P++ GQTKTKL + DA+  V 
Sbjct: 291 RDINRYADTVIKNNKTPSKFSWDDIKEGMMCILSVRHTDPQYEGQTKTKLSNPDAKEAVN 350

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADC 456
             + + F+ +L+++P +A  +L+  +   + R+  ++ RE   RK+A+    LPGKLADC
Sbjct: 351 IIIGNAFEEFLLKSPEDAKAILDKNVNAQKARIAAQRAREETRRKSALDSFSLPGKLADC 410

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
               ++  EL++VEGDSAGGSAK  RNR  QA+LPLRGK+LNV      +  +N +I  +
Sbjct: 411 ETKDSNIAELYLVEGDSAGGSAKTGRNRKFQAILPLRGKVLNVERVTEARAFSNNEIKSI 470

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           V A+G   + +     LRY+K++IMTDADVDGAHI +LLLTFFY+ M  L+   H+++  
Sbjct: 471 VTAVGTGIKEELDLSKLRYKKIVIMTDADVDGAHIRTLLLTFFYRYMKPLVANGHIYIAQ 530

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL++I  G K  YA+ +    ++     +    K  I R+KGLGEM   QL ET MD  
Sbjct: 531 PPLYKIEAGKKIAYAYTDNQLDELKN--NEFNNLKYTIQRYKGLGEMDPLQLWETTMDPQ 588

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +RT+L++ +           +  + LMG   + R  +IQ+ A F++++ 
Sbjct: 589 QRTMLQISLEDAT----LANEVFSDLMGEDPELRKIYIQDNAKFVENID 633


>gi|81428587|ref|YP_395587.1| DNA topoisomerase IV subunit B [Lactobacillus sakei subsp. sakei
           23K]
 gi|78610229|emb|CAI55278.1| Topoisomerase IV, subunit B [Lactobacillus sakei subsp. sakei 23K]
          Length = 663

 Score =  594 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 246/656 (37%), Positives = 369/656 (56%), Gaps = 33/656 (5%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            +   +Y+ +SI++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DE +AG+   I
Sbjct: 2   PNQKQDYNDNSIQVLEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALAGFGAEI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V++  +  ++V D+GRG+P   H       T+E+ILT LHAGGKF  ++Y+ SGGLHGV
Sbjct: 62  NVTIGADNSISVRDHGRGMPTGMH--QSGIPTIEVILTVLHAGGKFTQNSYKTSGGLHGV 119

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           G SVVNALS+ L V V R    + ++F   G P+  L+K  K     GT ITF+PD  IF
Sbjct: 120 GASVVNALSEWLTVRVVRDGVAYEERFENGGHPVGTLKKVGKANEPNGTLITFKPDASIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                ++   L +  +  A+L   VK   +  +         +++ F++P G+++++   
Sbjct: 180 QV-TTYNYNTLAERLRESAFLLKDVKITLTDLR-----ADPAKEDVFHYPEGIQSFVDYL 233

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            E++  I ++++   T++       VE+A  + +     I S+ N + T +GGTHE+G++
Sbjct: 234 NEDKDTIGNKLYFEGTKED----IEVEFAGQYNDGYSENIMSFVNNVRTGDGGTHEAGMK 289

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLD 391
             LT+    YA       +R  ++   D+      +LSV I E   +F GQTK KL S  
Sbjct: 290 AGLTKAFNDYARKVNLLKERDKNMEGSDVREGLSAVLSVRIPEELLQFEGQTKGKLGSPQ 349

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL-- 449
           A+  V+N + +    +L++N   A  L+   ++  E R   RK RE +R    +K     
Sbjct: 350 ARTAVDNLVYEQMSFFLLENGEFAQALVRKSLKAREAREAARKAREQSRNGKKKKKSDGL 409

Query: 450 -PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
             GKL       A   EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  ++I 
Sbjct: 410 LSGKLTPAQSKNAAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQEIL 469

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            N++I  ++  +G    ++++ ED  Y+K+IIMTDAD DGAHI  LLLTFFY+ M  LIE
Sbjct: 470 KNEEINTMIYTIGAGVGAEFKIEDSNYDKIIIMTDADTDGAHIQILLLTFFYRYMRPLIE 529

Query: 569 QKHLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
              +++  PPL+++ +G    TK  YA  ++  + + +E  K         RFKGLGEM 
Sbjct: 530 AGKVYIALPPLYKLQKGAGGKTKIAYAWTDDELKVVAKEMGK----GYSQQRFKGLGEMN 585

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           A QL +T MD   RTL+RV I+         +  +  LMG K + R K+I+E   F
Sbjct: 586 ADQLWDTTMDPTSRTLIRVRIDD----AALAERRVTTLMGDKVEPRRKWIEENVKF 637


>gi|227890873|ref|ZP_04008678.1| DNA topoisomerase IV subunit B [Lactobacillus salivarius ATCC
           11741]
 gi|227867282|gb|EEJ74703.1| DNA topoisomerase IV subunit B [Lactobacillus salivarius ATCC
           11741]
          Length = 690

 Score =  594 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 244/659 (37%), Positives = 364/659 (55%), Gaps = 33/659 (5%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
                  +NY+  SI++L+GLE VR RPGMYIG TD + LHHL  E+ DNA+DE ++GY 
Sbjct: 14  KEKSMPKNNYNDDSIQVLKGLEAVRKRPGMYIGSTDSRGLHHLVYEIFDNAVDEALSGYG 73

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             I V +  +  +TVVDNGRG+PV  H       T+E+I T LHAGGKF    Y+ SGGL
Sbjct: 74  KEINVIIHKDDSITVVDNGRGMPVGMHSM--GIPTVEVIFTVLHAGGKFGQGDYKTSGGL 131

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           HGVG SVVNALS +L V   R    + + F + G P+  L K  K + K GT++TF+PD 
Sbjct: 132 HGVGASVVNALSSKLTVNTVRDGIEYEEDFVNGGQPVGTLRKIGKAKRKSGTKVTFKPDA 191

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF     ++   L +  +  A+L   VK   + ++          +EEF +  G+K ++
Sbjct: 192 NIFSTT-KYNFNTLAERLRESAFLLKGVKITLTDER-----TDPYTEEEFLYAEGIKEFV 245

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   E++ ++   +   + +K G     VE A  + +     I S+ N + T +GGTHE+
Sbjct: 246 EYLNEDKDVLGPVM-YFEGKKDGI---EVEVAGQYNDGYSETIMSFVNNVRTKDGGTHEA 301

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLV 388
           G++ A T+   +YA        +  ++   D+      ++SV I E   +F GQTK KL 
Sbjct: 302 GMKAAWTKAFNEYARKINLLKDKDKNLEGSDVREGLSAVVSVRIPEELLQFEGQTKGKLG 361

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR 448
           + +A++ V++ + +   ++L++N   A +L+   I+  E R   RK R+ +R    R+  
Sbjct: 362 TPEARQIVDSVVNEQLGYFLMENGDFAQELVRKSIKAREAREAARKARDESRNGKKRRKS 421

Query: 449 ---LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              L GKL       A   ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  +
Sbjct: 422 ERLLSGKLTPAQSKNAKRNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQ 481

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
            I  N++I  ++  +G    +++  +D  Y+KVIIMTDAD DGAHI +LLLTFFY+ M  
Sbjct: 482 DIMKNEEINTMIYTIGAGVGAEFNIDDANYDKVIIMTDADTDGAHIQTLLLTFFYKYMRP 541

Query: 566 LIEQKHLFLISPPLFRI----TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
           +I    +++  PPL++I     +     YA  +   +   +E KK       + R+KGLG
Sbjct: 542 MINAGRVYIALPPLYKIEKTVKKKRVIKYAWTDAELESATKELKK----GYTLQRYKGLG 597

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           EM A QL ET M+   RTL+RV I+ D       +  +  LMG K + R K+I++   F
Sbjct: 598 EMNADQLWETTMNPETRTLVRVRIDDDT----IAEKRVTTLMGDKVEPRRKWIEKNVKF 652


>gi|324992846|gb|EGC24766.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis
           SK405]
 gi|324994514|gb|EGC26427.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis
           SK678]
 gi|327462153|gb|EGF08480.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis
           SK1]
          Length = 647

 Score =  594 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 242/653 (37%), Positives = 367/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVADHGRGMPVGKH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R  T++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMPDDTIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   V+   +  +   E        EF++  G++ ++    E+
Sbjct: 186 TDFKYNTIAERLKESAFLLKNVRLSLTDARTGEE-------VEFHYENGVEDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  ++      + E+ G     V+ A+ + +     I S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KETLTPV-LYFEGEESG---FQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEAHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V++ + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 AVDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    S +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E   
Sbjct: 475 EINTMIYTIGAGVGSDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534

Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G        YA  +     +  +F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFGKGAM----LQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+ + RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPDTRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|269124013|ref|YP_003306590.1| DNA gyrase, B subunit [Streptobacillus moniliformis DSM 12112]
 gi|268315339|gb|ACZ01713.1| DNA gyrase, B subunit [Streptobacillus moniliformis DSM 12112]
          Length = 660

 Score =  594 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 260/671 (38%), Positives = 367/671 (54%), Gaps = 38/671 (5%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           +  NY   SI +LEGL+ VR+RPGMYIG T  + LHHL  E++DN++DE +AG  + I V
Sbjct: 2   SEKNYGGESITVLEGLDAVRVRPGMYIGTTSSRGLHHLVWEIVDNSIDEALAGVCDTITV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            +  +  + ++DNGRGIP + H     KSTLE+++T LHAGGKFDNS Y+ SGGLHGVGI
Sbjct: 62  KMLPDSEIEIIDNGRGIPTDMHK--SGKSTLEVVMTVLHAGGKFDNSNYQFSGGLHGVGI 119

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGD 218
           SVVNALS++L  TV R   +  Q FS+G  ++   +  K      GT I F+PD  IF  
Sbjct: 120 SVVNALSEKLEATVTRDGRVVRQIFSKGNAITEALEIGKAPAKAHGTTIKFKPDADIFET 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              FD   L +  +  AYL+  +K      +    K    ++E FYF GG+  ++   + 
Sbjct: 180 I-QFDYDILQRRLKELAYLNQGIKIILIDAR----KPEKVKEEVFYFEGGIVDFVTELVG 234

Query: 279 NRSLISSEIFTG------KTEKKGTHRG------TVEWAIAWCEENPEITS-YCNTILTD 325
              +I   I+        + E              VE A+ +      I   + N I T 
Sbjct: 235 EDKIIEDVIYMKDRVMLTEGEVDDEGNPIPDKYSEVEIAMIYKNSQSTIEYSFVNNINTS 294

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           +GGTH SGLR ALTR I   A    +K       +D+    V +LS+   EP+F  QTK 
Sbjct: 295 DGGTHVSGLRTALTRTINDLAREASSKNEFK--GEDVREGLVYVLSLKFPEPQFESQTKA 352

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444
           KL S +A   V          YL  +P +   +++ +    + R   ++ R+ V +K   
Sbjct: 353 KLGSSEATSIVSGVFGSKLKMYLEDHPKDCKTIIDKIAISKQAREAAKRARDLVTKKNEF 412

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC       +E+FIVEGDSAGGSAKQ R +  QA+LPLRGKILNV  A  
Sbjct: 413 SLGGLPGKLADCQSKNPEESEIFIVEGDSAGGSAKQGRFKEYQAILPLRGKILNVEKANE 472

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
            KI  N +I  ++ A G     ++  E LRY K+IIMTDADVDGAHI +L+LTFFY+ + 
Sbjct: 473 HKILENSEIKAMITAFGAGFGDRFDIEKLRYHKIIIMTDADVDGAHIRTLMLTFFYRYLR 532

Query: 565 DLIEQKHLFLISPPLFRIT----QGTKSVYAHDEEHKQKIL----EEFK--KHGKGKIEI 614
           +LI   H+++  PPL+++T    +  +  YA+ +E  + I     E+      GK K  +
Sbjct: 533 ELINNGHIYIAQPPLYKVTTKSGKKEQVKYAYSDEQLKSITRVLDEKLGVDNSGKNKYNV 592

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
            R+KGLGEM   QLKET MD + RTLL+V +       +      + LMG K + R +FI
Sbjct: 593 QRYKGLGEMNPDQLKETTMDPDVRTLLKVTLED----AQYADKMFSILMGDKVEPRREFI 648

Query: 675 QERASFIDDVG 685
           +E A+++ ++ 
Sbjct: 649 EEHANYVRNLD 659


>gi|77405922|ref|ZP_00783003.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae H36B]
 gi|77175496|gb|EAO78284.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae H36B]
          Length = 642

 Score =  594 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 237/651 (36%), Positives = 366/651 (56%), Gaps = 32/651 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY   +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ N I+V ++
Sbjct: 3   NYGDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGNRIDVIIN 62

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G +TV D+GRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 63  KDGSITVTDHGRGMPTGMH--AMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSVV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           NALS  L V + R   I+ Q+F  G  P++ L+K     ++K GT ++F PD  +F    
Sbjct: 121 NALSSWLEVEIIRDGAIYRQRFENGGKPVTTLKKIGTAPKSKSGTSVSFMPDQSVFSTI- 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    + +  +  A+L   V    + ++         E  EF++  G++ +++   E++
Sbjct: 180 DFKFNTIAERLKESAFLLKNVTLTLTDNRSE-----EAEHLEFHYENGVQDFVEYLNEDK 234

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
             ++  +F    E++      +++   + +    I S+ N + T +GGTHE+GL+ A+T+
Sbjct: 235 ETLTPIMFFEGEEQEFHIEVALQYNDGFSDN---ILSFVNNVRTKDGGTHETGLKSAITK 291

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQRTV 396
            +  YA  T    ++  ++   D       ILS+ +     +F GQTK KL S  A+  V
Sbjct: 292 SMNDYARKTGLLKEKDKNLEGSDYREGLSAILSILVPEEHLQFEGQTKDKLGSPLARPIV 351

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGKL 453
           ++ + +   ++L++N   A+ L+   I+  + R   RK R+ +R     K       GKL
Sbjct: 352 DSIVSEKLTYFLMENGDLASNLIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                  A   EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN A A    I  N++I
Sbjct: 412 TPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMADIIKNEEI 471

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++  +G      +  +D+ Y+KVIIMTDAD DGAHI +LLLTFFY+ M  L+E+ H++
Sbjct: 472 NTMIHTIGAGVGPDFNLDDINYDKVIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGHVY 531

Query: 574 LISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G        YA  +   +++ ++F K       + R+KGLGEM A QL 
Sbjct: 532 IALPPLYKMSKGKGKKEIVEYAWTDIELEELRQKFGKGSL----LQRYKGLGEMNADQLW 587

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV I      L   +  +N LMG K   R ++I++   F
Sbjct: 588 ETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVPPRRQWIEDNVKF 634


>gi|288905177|ref|YP_003430399.1| DNA topoisomerase IV subunit B [Streptococcus gallolyticus UCN34]
 gi|306831248|ref|ZP_07464408.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|288731903|emb|CBI13468.1| Putative DNA topoisomerase IV subunit B [Streptococcus gallolyticus
           UCN34]
 gi|304426484|gb|EFM29596.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 649

 Score =  594 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 237/653 (36%), Positives = 369/653 (56%), Gaps = 34/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ N I+V +
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLVWEIVDNAVDEALSGFGNQIDVII 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G +TV D GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NSDGSVTVSDQGRGMPTGKH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMPDDTIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   V    + ++         E  EF++  G++ +++   E+
Sbjct: 186 IDFKFNTIAERLKESAFLLKDVTLTLTDNR-----PEEAEHLEFHYENGVQDFVEYLNED 240

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++  I     ++       VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 241 KETLTPVISVTGEDQN----FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 296

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  +    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 297 TKAMNDYARKSGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARP 356

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + +   ++L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 357 IVDGIVSEKLTYFLLENGEIASNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 416

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN A A    I  N+
Sbjct: 417 KLTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMSDIVKNE 476

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    +++  E+  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 477 EINTMIYTIGAGVGAEFNVENSNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 536

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +++ ++F K      ++ R+KGLGEM A Q
Sbjct: 537 VYIALPPLYKMSKGKGKKEQVEYAWTDGELEELRQKFGK----GAQLQRYKGLGEMNADQ 592

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 593 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 641


>gi|312863196|ref|ZP_07723434.1| DNA topoisomerase IV, B subunit [Streptococcus vestibularis F0396]
 gi|311100732|gb|EFQ58937.1| DNA topoisomerase IV, B subunit [Streptococcus vestibularis F0396]
          Length = 649

 Score =  594 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 234/653 (35%), Positives = 368/653 (56%), Gaps = 34/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ ++I V+L
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGDVIAVTL 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G ++V D+GRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NNDGSVSVSDSGRGMPTGMH--AMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F  G  P++ LEK  K  ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGNVYRQRFENGGHPVTGLEKIGKAPKSKTGTKVTFMPDASIFSTT 186

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   V    +  +   E      +EEF++  G++ ++    E+
Sbjct: 187 -DFKFNTISERLKESAFLLKNVTMTLTDLRGEEE-----VREEFHYENGVQDFVSYLNED 240

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++  I+             +E A+ + +   +   S+ N + T +GGTHE+G + A+
Sbjct: 241 KETLTPVIYI----DGDQQEFHLEVALQYNDGYSDNILSFVNNVRTKDGGTHETGFKSAI 296

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       ++S+ +     +F GQTK KL S  A+ 
Sbjct: 297 TKALNDYARKTGLLKEKDKNLEGSDYREGLSAVISLLVPEEHLQFEGQTKDKLGSPLARP 356

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451
            V++ + +   ++L++N   A+ L+   I+  + R   RK R+ +R     K       G
Sbjct: 357 IVDSIVSEHLTYFLMENGDLASNLVRKAIKARDAREAARKARDASRNGKKNKKDKGLLSG 416

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL       A   EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N+
Sbjct: 417 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 476

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  +D+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 477 EINTMIYTIGAGVGADFNLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536

Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G        YA  +   +++ ++F +       + R+KGLGEM A Q
Sbjct: 537 VYIALPPLYKMSKGKGKKEVVEYAWTDGELEELRQKFGRGAI----LQRYKGLGEMNADQ 592

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET MD   RTL+RV I+     L   +  ++ LMG K   R ++I++   F
Sbjct: 593 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKPAPRRQWIEDNVKF 641


>gi|227535108|ref|ZP_03965157.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227187249|gb|EEI67316.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 670

 Score =  594 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 247/655 (37%), Positives = 365/655 (55%), Gaps = 35/655 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
            A+  Y+ SSI++L GLE VR RPGMYIG TD + LHHL  E++DN++DE +AG+ + I 
Sbjct: 3   KATQAYNDSSIQVLHGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNSVDEALAGFGDEIN 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +  +TV D+GRG+P   HP    K T+E+ILT LHAGGKF+ ++Y+ SGGLHGVG
Sbjct: 63  VTIHADNSVTVQDHGRGMPTGMHP--SGKPTIEVILTVLHAGGKFNQNSYKTSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
            SVVNALS+ L V V R    F + F + G P   L+K  KV    GT ITF+PDP IF 
Sbjct: 121 SSVVNALSESLTVRVVRDKRAFEEHFINGGHPDGTLQKLGKVNEPNGTTITFKPDPTIFQ 180

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F    L +  +  A+L   +    + ++         + + +++P GL ++++   
Sbjct: 181 TTV-FSYDTLAERLRESAFLLKNITINLTDER-------TGKHDSYHYPDGLVSFVKYLN 232

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRV 336
           E +  +S  I   + +K G     V++A  + +   E    + N + T +GGTHE GLR 
Sbjct: 233 EGKDALSQVIN-FEGKKDGI---VVDFAGQYNDGYSENLISFVNNVRTGDGGTHEIGLRS 288

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392
            +TR   ++A       +R  ++   D+     GILSV I E   +F GQTK KL +  A
Sbjct: 289 GMTRAFNEFARKVGLLKERDKNLEGSDVREGFAGILSVRIPEEILQFEGQTKGKLGTPQA 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL--- 449
           +  V+  + D    +L++N  E+ +L+   ++  + R   RK R+ +R    RK      
Sbjct: 349 RTVVDGIVYDKLSTFLMENGEESQELVRKAVKARDAREAARKARDDSRTGRKRKKDQGLL 408

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
            GKL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + I  
Sbjct: 409 SGKLTPAQTKNPKRNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIVK 468

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N++I  ++  +G    + +  +   Y+K+IIMTDAD DGAHI  LLLTFFY+ M  LI+ 
Sbjct: 469 NEEINTMIYTIGAGVGADFDMQQANYDKIIIMTDADTDGAHIQILLLTFFYRYMRPLIDA 528

Query: 570 KHLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
             +++  PPL+R+ +G    TK  YA  +E   K  +   K       ++RFKGLGEM A
Sbjct: 529 GRIYIALPPLYRLQKGAGAKTKISYAWTDEELAKETKAMGK----GYTLTRFKGLGEMNA 584

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            QL ET M+   RTL+RV I+      +  +  +  LMG + + R ++I+    F
Sbjct: 585 DQLWETTMNPETRTLIRVRIDD----AQLAERRVTTLMGDRVEPRREWIEHNVKF 635


>gi|24379696|ref|NP_721651.1| DNA gyrase subunit B [Streptococcus mutans UA159]
 gi|290580305|ref|YP_003484697.1| putative DNA gyrase subunit B [Streptococcus mutans NN2025]
 gi|24377654|gb|AAN58957.1|AE014963_1 putative DNA gyrase subunit B [Streptococcus mutans UA159]
 gi|254997204|dbj|BAH87805.1| putative DNA gyrase subunit B [Streptococcus mutans NN2025]
          Length = 650

 Score =  594 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 259/649 (39%), Positives = 378/649 (58%), Gaps = 24/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I+V 
Sbjct: 12  AQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVF 71

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TV+D+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGVG S
Sbjct: 72  IEEDNSITVIDDGRGIPVDIQQK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 130

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L V V +   I  Q++ RG+    L+      +  GT + F PDP+IF +  
Sbjct: 131 VVNALSTQLDVRVHKNGKIHYQEYHRGVVAEDLKVIGDT-DITGTIVHFTPDPEIFTETT 189

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD  +L K  Q  A+L+  +K   +  +   E+      EEF++ GG+ +Y++   EN+
Sbjct: 190 EFDFDKLAKRIQELAFLNKGLKISITDKRSGQERK-----EEFHYEGGIVSYVEFINENK 244

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
            +I  +         G    +VE A+ +       I S+ N I T EGGTHE G R ALT
Sbjct: 245 EVIFDKPIYTDGSLDGI---SVEVAMQYTTGFHENIMSFANNIHTHEGGTHEQGFRTALT 301

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA+  +   +   ++  DD+      I+SV    P+F GQTKTKL + +  +   
Sbjct: 302 RVINDYAKKNKILKENEDNLNGDDVREGLTAIISVKHPNPQFEGQTKTKLGNSEVVKITN 361

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
               D  + +L++NP  A K++E  I  S+ R+  ++ RE   +K+ +    LPGKLADC
Sbjct: 362 RLFSDALNRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADC 421

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S N     ELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I  L
Sbjct: 422 SSNDPIQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSL 481

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    +++     RY+K++IMTDADVDGAHI +LLLT  Y+ M  ++E  ++++  
Sbjct: 482 FTAMGTGFGAEFDVSKSRYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQ 541

Query: 577 PPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           PP++ I  G+    Y       EE  Q+ LE++   G+ K  + R+KGLGEM   QL ET
Sbjct: 542 PPIYGIKVGSDIKEYIQPGNDQEEKLQEALEKYS-QGRSKPTVQRYKGLGEMDDHQLWET 600

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            M+ + R + RV ++       +     + LMG + + R  FI+E A +
Sbjct: 601 TMNPDNRLMARVSLDD----AAEADKIFDMLMGDRVEPRRGFIEENAVY 645


>gi|24379635|ref|NP_721590.1| DNA topoisomerase IV subunit B [Streptococcus mutans UA159]
 gi|24377587|gb|AAN58896.1|AE014957_9 putative DNA topoisomerase IV, subunit B [Streptococcus mutans
           UA159]
          Length = 649

 Score =  594 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 239/653 (36%), Positives = 363/653 (55%), Gaps = 34/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ N I+V +
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGNQIDVII 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G +TV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSITVADHGRGMPTGKH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F  G  P + LEK  K  ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGIVYKQRFEDGGKPATTLEKVGKAPKSKSGTKVTFMPDAGIFSTT 186

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V    + ++         E   F++  G++ +++   E+
Sbjct: 187 N-FVYNTIAERLNESAFLLKNVTLTLTDERSE-----EIEHVAFHYENGVQDFVEYLNED 240

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           + +++  I+    E        VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 241 KEILTPVIYFEGEEAD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 296

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 297 TKAMNDYARKTGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARP 356

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451
            V+  + +   ++L++N   A+ L+   I+  E R   RK R+ +R     K       G
Sbjct: 357 IVDGLVLEQLTYFLMENGELASNLIRKAIKAREAREAARKARDDSRNGKKNKKDKGLLSG 416

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN A A  + I  N+
Sbjct: 417 KLTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMDDIIKNE 476

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G      ++ +D  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 477 EINTMIYTIGAGAGPDFKVDDSNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 536

Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G        YA  +   + + ++F K       + R+KGLGEM A Q
Sbjct: 537 VYIALPPLYKMSKGKGAKEVVEYAWTDGELEDLRKKFGKGAM----LQRYKGLGEMNADQ 592

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K   R K+I++   F
Sbjct: 593 LWETTMNPENRTLIRVTIED----LARAERRVNVLMGDKVPPRRKWIEDNVKF 641


>gi|319745151|gb|EFV97474.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus agalactiae
           ATCC 13813]
          Length = 653

 Score =  594 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 237/651 (36%), Positives = 365/651 (56%), Gaps = 32/651 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY   +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ N I+V ++
Sbjct: 14  NYGDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGNRIDVIIN 73

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G +TV D+GRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 74  KDGSITVTDHGRGMPTGMH--AMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSVV 131

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           NALS  L V + R   I+ Q+F  G  P++ L+K     ++K GT ++F PD  +F    
Sbjct: 132 NALSSWLEVEIIRDGAIYRQRFENGGKPVTTLKKIGTAPKSKSGTSVSFMPDQSVFSTI- 190

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    + +  +  A+L   V    + ++         E  EF++  G++ +++   E++
Sbjct: 191 DFKFNTIAERLKESAFLLKNVTLTLTDNRSE-----EAEHLEFHYENGVQDFVEYLNEDK 245

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
             ++  +F    E++      +++   + +    I S+ N + T +GGTHE+GL+ A+T+
Sbjct: 246 ETLTPIMFFEGEEQEFHIEVALQYNDGFSDN---ILSFVNNVRTKDGGTHETGLKSAITK 302

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQRTV 396
            +  YA  T    ++  ++   D       ILS+ +     +F GQTK KL S  A+  V
Sbjct: 303 SMNDYARKTGLLKEKDKNLEGSDYREGLSAILSILVPEEHLQFEGQTKDKLGSPLARPIV 362

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGKL 453
           +  + +   ++L++N   A+ L+   I+  + R   RK R+ +R     K       GKL
Sbjct: 363 DGIVSEKLTYFLMENGDLASNLIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSGKL 422

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                  A   EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN A A    I  N++I
Sbjct: 423 TPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMADIIKNEEI 482

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++  +G      +  +D+ Y+KVIIMTDAD DGAHI +LLLTFFY+ M  L+E+ H++
Sbjct: 483 NTMIHTIGAGVGPDFNLDDINYDKVIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGHVY 542

Query: 574 LISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G        YA  +   +++ ++F K       + R+KGLGEM A QL 
Sbjct: 543 IALPPLYKMSKGKGKKEIVEYAWTDIELEELRQKFGKGSL----LQRYKGLGEMNADQLW 598

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV I      L   +  +N LMG K   R ++I++   F
Sbjct: 599 ETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVPPRRQWIEDNVKF 645


>gi|23099148|ref|NP_692614.1| DNA topoisomerase IV subunit B [Oceanobacillus iheyensis HTE831]
 gi|22777376|dbj|BAC13649.1| DNA topoisomerase IV subunit B [Oceanobacillus iheyensis HTE831]
          Length = 651

 Score =  594 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 246/651 (37%), Positives = 368/651 (56%), Gaps = 36/651 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y  SSI++LEGL+ VR RPGMYIG TD + LHHL  E++DNA+DE +AGY   I+V++ 
Sbjct: 6   QYSDSSIQVLEGLDAVRKRPGMYIGSTDIRGLHHLVYEIVDNAVDEALAGYGKEIQVTIH 65

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V D+GRG+P   H     K T E+I T LHAGGKF   +Y+ SGGLHGVG SVV
Sbjct: 66  KDESVSVKDSGRGMPTGMH--QTGKPTTEVIFTVLHAGGKFGQGSYKTSGGLHGVGASVV 123

Query: 163 NALSDELHVTVARQNTIFSQKFSRGI-PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L VT  R    + Q+F  G  P++ LEKK   R  +G+ I F+PDP IF     
Sbjct: 124 NALSEWLEVTTFRDGFQYQQRFENGGRPVTTLEKKGPTRK-KGSVIRFKPDPTIFSTIV- 181

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   + +  +  A+L   +K     ++         + + + +P GLK+++    E + 
Sbjct: 182 YNYETISERLRESAFLLKGLKIELIDERH-------DKHDVYEYPEGLKSFVDYLNEEKD 234

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            + S     + E+       VE+A  + +     + S+ N + T +GGTHESG R A+TR
Sbjct: 235 ALHSI-VFMEGEQ---QEIEVEFAFQFNDGFAENMLSFVNHVRTRDGGTHESGARTAITR 290

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
            +  YA       ++  ++   D+     G++SV + E   +F GQTK KL + +A+  V
Sbjct: 291 TVNDYARRQGLLKEKEKNLEGTDIREGLTGVVSVRVPEDKLQFEGQTKGKLGTTEARSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP---GKL 453
           ++ + +  +++L +NP  +  L++  I+  E R   RK RE  R    RK +     GKL
Sbjct: 351 DSVISEHLNYFLEENPDISGMLIKKSIKAKEAREAARKAREEARTGKKRKRKDALLSGKL 410

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A  + +  N++I
Sbjct: 411 TPAQSRNPEKNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLQDVFKNEEI 470

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++  +G      +  +D++Y+K+IIMTDAD DGAHI  LLLTFFY+ M  L+E   +F
Sbjct: 471 STIIHTIGAGVGGDFNLDDVQYDKIIIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKIF 530

Query: 574 LISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPLF++++G     K  YA DE+  +  ++E     K    I R+KGLGEM A QL 
Sbjct: 531 IALPPLFKVSKGKGKQEKLRYAWDEQELKVAIQEL----KQGYTIQRYKGLGEMNADQLW 586

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+ + RTL+RV I+     +   +  +  LMG K + R K+I+    F
Sbjct: 587 ETTMNPSSRTLIRVSIDD----IARAERRVTTLMGDKVEPRRKWIEGHVKF 633


>gi|191638405|ref|YP_001987571.1| DNA topoisomerase IV subunit B [Lactobacillus casei BL23]
 gi|190712707|emb|CAQ66713.1| Topoisomerase IV, subunit B [Lactobacillus casei BL23]
 gi|327382434|gb|AEA53910.1| DNA topoisomerase IV subunit B [Lactobacillus casei LC2W]
 gi|327385633|gb|AEA57107.1| DNA topoisomerase IV subunit B [Lactobacillus casei BD-II]
          Length = 670

 Score =  594 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 247/655 (37%), Positives = 365/655 (55%), Gaps = 35/655 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
            A+  Y+ SSI++L GLE VR RPGMYIG TD + LHHL  E++DN++DE +AG+ + I 
Sbjct: 3   KATQAYNDSSIQVLHGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNSVDEALAGFGDEIN 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +  +TV D+GRG+P   HP    K T+E+ILT LHAGGKF+ ++Y+ SGGLHGVG
Sbjct: 63  VTIHADNSVTVQDHGRGMPTGMHP--SGKPTIEVILTVLHAGGKFNQNSYKTSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
            SVVNALS+ L V V R    F + F + G P   L+K  KV    GT ITF+PDP IF 
Sbjct: 121 SSVVNALSESLTVRVVRDKRAFEEHFINGGHPDGSLQKLGKVNEPNGTTITFKPDPTIFQ 180

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F    L +  +  A+L   +    + ++         + + +++P GL ++++   
Sbjct: 181 TTV-FSYDTLAERLRESAFLLKNITINLTDER-------TGKHDSYHYPDGLVSFVKYLN 232

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRV 336
           E +  +S  I   + +K G     V++A  + +   E    + N + T +GGTHE GLR 
Sbjct: 233 EGKDALSQVIN-FEGKKDGI---VVDFAGQYNDGYSENLISFVNNVRTGDGGTHEIGLRS 288

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392
            +TR   ++A       +R  ++   D+     GILSV I E   +F GQTK KL +  A
Sbjct: 289 GMTRAFNEFARKVGLLKERDKNLEGSDVREGFAGILSVRIPEEILQFEGQTKGKLGTPQA 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL--- 449
           +  V+  + D    +L++N  E+ +L+   ++  + R   RK R+ +R    RK      
Sbjct: 349 RTVVDGIVYDKLSTFLMENGEESQELVRKAVKARDAREAARKARDDSRTGRKRKKDQGLL 408

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
            GKL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + I  
Sbjct: 409 SGKLTPAQTKNPKRNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIVK 468

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N++I  ++  +G    + +  +   Y+K+IIMTDAD DGAHI  LLLTFFY+ M  LI+ 
Sbjct: 469 NEEINTMIYTIGAGVGADFDLQQANYDKIIIMTDADTDGAHIQILLLTFFYRYMRPLIDA 528

Query: 570 KHLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
             +++  PPL+R+ +G    TK  YA  +E   K  +   K       ++RFKGLGEM A
Sbjct: 529 GRIYIALPPLYRLQKGAGAKTKISYAWTDEELAKETKAMGK----GYTLTRFKGLGEMNA 584

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            QL ET M+   RTL+RV I+      +  +  +  LMG + + R ++I+    F
Sbjct: 585 DQLWETTMNPETRTLIRVRIDD----AQLAERRVTTLMGDRVEPRREWIEHNVKF 635


>gi|327460298|gb|EGF06635.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis
           SK1057]
 gi|328946252|gb|EGG40396.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis
           SK1087]
          Length = 647

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 241/653 (36%), Positives = 367/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVADHGRGMPVGKH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R  T++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMPDDTIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   V+   +  +   E        EF++  G++ ++    E+
Sbjct: 186 TDFKYNTIAERLKESAFLLKNVRLSLTDARTGEE-------VEFHYENGVEDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  ++      + E+ G     V+ A+ + +     I S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KETLTPV-LYFEGEESG---FQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEAHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V++ + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 AVDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E   
Sbjct: 475 EINTMIYTIGAGVGTDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534

Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G        YA  +     +  +F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFGKGAM----LQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+ + RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPDTRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|239942665|ref|ZP_04694602.1| DNA gyrase subunit B [Streptomyces roseosporus NRRL 15998]
 gi|239989124|ref|ZP_04709788.1| DNA gyrase subunit B [Streptomyces roseosporus NRRL 11379]
          Length = 690

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 249/687 (36%), Positives = 373/687 (54%), Gaps = 28/687 (4%)

Query: 20  SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79
           ++    +  IP +     +    +YDAS+I +LEGL+ VR RPGMYIG T E+ LHHL  
Sbjct: 10  ADSGNPNENIPSTAGEPGEVPETSYDASAITVLEGLDAVRKRPGMYIGSTGERGLHHLVQ 69

Query: 80  EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139
           EV+DN++DE +AG+A+ I+V++  +G + V+DNGRGIPV   P    K  +E++LT LHA
Sbjct: 70  EVVDNSVDEAMAGHADTIDVTILPDGGVRVIDNGRGIPVGIVP-SEGKPAVEVVLTVLHA 128

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKF    Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL K E  
Sbjct: 129 GGKFGGGGYAVSGGLHGVGVSVVNALSTRVSVEVKTDGYRWTQDYKLGVPTAPLAKHEAT 188

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE------ 253
               GT +TF  D  IF     +    L +  Q  A+L+  +    + ++E A+      
Sbjct: 189 EE-TGTTVTFWADGDIFET-TEYSFETLSRRFQEMAFLNKGLTLKLTDERESAKATAGAD 246

Query: 254 --------KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
                   +        +++  G+  +++     +  +  +       +      +VE A
Sbjct: 247 SADAAEPAEAEAARSVTYHYENGIVDFVKYLNSRKGDVIHQSVIDIEAEDKDRLLSVEIA 306

Query: 306 IAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDL 362
           + W  +    + S+ N I T EGGTHE G R ALT  + +YA   +   ++  ++  +D+
Sbjct: 307 MQWNTQYTEGVYSFANAIHTHEGGTHEEGFRAALTSLVNRYARDKKLLREKDDNLTGEDV 366

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
                 I+SV + EP+F GQTKTKL + +A+  V+  + +    +  +NP EA  ++   
Sbjct: 367 REGLTAIISVKLGEPQFEGQTKTKLGNTEAKTFVQKVVHEQLTDWFDRNPNEAADIIRKG 426

Query: 423 IERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
           I  S  R+  RK R++ R+   +    LPGKL+DC  N     E+FIVEGDSAGGSAK  
Sbjct: 427 IAASTARVAARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSG 486

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541
           RN   QA+LP+RGKILNV  A  +KI  N ++  L+ A G      +  E LRY K+I+M
Sbjct: 487 RNPMYQAILPIRGKILNVEKARIDKILQNTEVQALISAFGTGVHEDFDIEKLRYHKIILM 546

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKI 600
            DADVDG HI +LLLTF ++ M  L+E  H++L  PPL++I  G     YA+ +  +  +
Sbjct: 547 ADADVDGQHINTLLLTFLFRFMKPLVEAGHVYLSRPPLYKIKWGRDDFEYAYSDRERDAL 606

Query: 601 LEEFKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           +   K++GK   +  I RFKGLGEM A +L+ T MD + R L +V ++          D 
Sbjct: 607 VALGKQNGKRIREDSIQRFKGLGEMNAEELRVTTMDIDHRVLGQVTLDD----AAQADDL 662

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            + LMG   + R  FIQ  A  +  + 
Sbjct: 663 FSVLMGEDVEARRSFIQRNAKDVRFLD 689


>gi|83280994|dbj|BAE53571.1| gyrase beta subunit [Thermoplasma acidophilum]
          Length = 641

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 260/659 (39%), Positives = 367/659 (55%), Gaps = 33/659 (5%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
             DNYD+S I+ILEGL+ VR  PGMYIG TD + LHHL  EV+DN++DE +AGY + I V
Sbjct: 2   TEDNYDSSQIQILEGLKAVRKVPGMYIGSTDTRGLHHLVYEVVDNSVDESVAGYCSRIYV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            +  +G +TV D+GRGIPV+ HPK+ N+  LEI+LT LH+G KFD   Y+++GGLHGVG+
Sbjct: 62  VMGSDGSITVEDDGRGIPVDIHPKY-NRPGLEIVLTELHSGAKFDKKVYKLTGGLHGVGL 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-----------RGTRIT 208
            VVNALS +L   V R   I+   F +GIP+S L+    V               G  I 
Sbjct: 121 HVVNALSKKLIAVVKRDGKIYYDIFEQGIPVSGLKTASDVSEIEKLGIKIQFPEHGAIIK 180

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F PDP IF     F    +L      +YL+ ++   +  +           K+  +  GG
Sbjct: 181 FYPDPDIFETT-EFSYETILARLTDLSYLNPQLTITFLDE-------ASGRKDILHHEGG 232

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGG 328
           L   ++   E +  +   ++  +         ++ +     +    + S+ N I T EGG
Sbjct: 233 LIELVRHLSEGKEALMEPLYLKEEVDSHMVEFSLLYTT---DVQETLMSFVNNISTPEGG 289

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISI-ISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           TH +G    L+R I+ YA      + +     DD+    + +L V ++ P+F GQTK+KL
Sbjct: 290 THVAGFHQGLSRAIQDYARSNNKIKGVEDITGDDVKEGVIAVLHVKMQNPQFEGQTKSKL 349

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
            +   +  V++        ++  NP  A  ++  V+  +  R   RK +E V RK+A+  
Sbjct: 350 GNSSVRGIVQSVTAKFMKTFMETNPHVADVIIGRVLSAAAAREASRKAKELVRRKSALEG 409

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADCS N    +EL+IVEGDSAGGSAKQARNR  QAVLPLRGKILNV  A   K
Sbjct: 410 GGLPGKLADCSSNDPSNSELYIVEGDSAGGSAKQARNRQYQAVLPLRGKILNVEKASDMK 469

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           +  N+ I DLV A+G   +     + LRY K+IIMTDADVDGAHI +LLLTFF++    L
Sbjct: 470 VVENEIIHDLVVAIGTGVKEDLNPKKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYARSL 529

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           IE  ++F   PPL+RI +G    Y + +E K+++  EF  +      I RFKGLGEM   
Sbjct: 530 IENGNVFFAEPPLYRIQKGQNVRYVYSDEEKERVSREFGPNAI----IQRFKGLGEMNPE 585

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           QL ET M+   R L++V I       ++ +     LMG K + R KFI+E A + +++ 
Sbjct: 586 QLWETTMNPKTRKLVQVTIED----AEEAERIFTILMGEKVEPRRKFIEENAVYAENID 640


>gi|50953931|ref|YP_061219.1| DNA gyrase subunit B [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50950413|gb|AAT88114.1| DNA gyrase subunit B [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 663

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 249/665 (37%), Positives = 357/665 (53%), Gaps = 21/665 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
                A  +Y A+ I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AGYA
Sbjct: 5   PNRAEAEHDYGANEIQVLEGLEAVRKRPGMYIGSTGPRGLHHLVYEIVDNSVDEALAGYA 64

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + IEV +  +G + V DNGRGIPV+ HP    KST+E++LT LHAGGKF    Y +SGGL
Sbjct: 65  DNIEVMILPDGSVRVFDNGRGIPVDEHP-VQKKSTVEVVLTILHAGGKFGGGGYAVSGGL 123

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS  L V V RQ  ++ Q +  G+P +PLE+ E+     GT I F P P+
Sbjct: 124 HGVGSSVVNALSTRLDVEVRRQGHVWRQSYRNGVPQAPLEQGEET-EATGTTIVFWPSPE 182

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-----EIAEKYGIPEKEEFYFPGGL 269
            F     FD   L    Q  A+L+  ++   +  +       A++   P  E F +  GL
Sbjct: 183 TFET-VEFDYDTLRTRFQQMAFLNKGLRIAIADQRPVSAEGEADEESEPRGEVFLYEKGL 241

Query: 270 KTYLQTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
             Y+      +            E +    +  +E A+ W       + +Y NTI T EG
Sbjct: 242 TDYVHYLNAAKKAEVVHDEIISFELEDTDRKIALEVAMQWTTSYNESVFTYANTINTHEG 301

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTHE G R ALT  + +YA        +  ++  DD+      ++SV + EP+F GQTKT
Sbjct: 302 GTHEEGFRAALTSLVNRYAREKNILKDKDDNLSGDDVREGLTAVISVKLSEPQFEGQTKT 361

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-I 444
           KL + +A+  V+    D    +  +NP +A +++   ++ +  R+  RK RE  R+   +
Sbjct: 362 KLGNTEAKAFVQKVAGDQLADWFDRNPNQAKEIIRKALQAATARIAARKARETARRKGLL 421

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               +PGKL DC       +E+FIVEGDSAGGSA Q RN   QA+LPLRGKILNV  A  
Sbjct: 422 ESGGMPGKLKDCQSKDPTLSEIFIVEGDSAGGSAVQGRNPETQAILPLRGKILNVEKARL 481

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           ++   N ++  ++ A G      +  E  RY K+++M DADVDG HI +LLLT  ++ M 
Sbjct: 482 DRALANNEVQAMITAFGAGIGEDFDPEKARYHKIVLMADADVDGQHITTLLLTLLFRYMR 541

Query: 565 DLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIE---ISRFKGL 620
            LIE  +++L  PPL+R+        Y + +  +   L E    GK   +   + R+KGL
Sbjct: 542 PLIELGYVYLAQPPLYRLKWSNADDEYVYSDRDRDAFLAEGLAAGKRIPKDNGVQRYKGL 601

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GEM   +L ET M+   RTLL+V ++          +    LMG   + R  FIQ+ A  
Sbjct: 602 GEMDYKELWETTMNPETRTLLQVTLDD----AAAVDEIFTTLMGEDVESRRSFIQKNAKD 657

Query: 681 IDDVG 685
           +  + 
Sbjct: 658 VRFLD 662


>gi|81427621|ref|YP_394618.1| DNA gyrase, B subunit [Lactobacillus sakei subsp. sakei 23K]
 gi|78609260|emb|CAI54307.1| DNA gyrase, B subunit [Lactobacillus sakei subsp. sakei 23K]
          Length = 658

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 257/666 (38%), Positives = 371/666 (55%), Gaps = 20/666 (3%)

Query: 22  KLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEV 81
              +  +  ++   A +  + +YDAS I++LEGLE VR RPGMYIG T  + LHHL  E+
Sbjct: 2   ADDQLNKETEAQIEAKEERAKSYDASQIQVLEGLEAVRKRPGMYIGTTSSQGLHHLVWEI 61

Query: 82  IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141
           IDN +DE +AG+A  I V ++ +  +TV D+GRGIPV    K   KS LE + T LHAGG
Sbjct: 62  IDNGIDEALAGFATEINVVVEPDNSITVTDDGRGIPVGIQAK-TGKSALETVFTILHAGG 120

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KF    Y++SGGLHGVG SVVNALS EL   V +    +   F RG   +P++       
Sbjct: 121 KFGGGGYKVSGGLHGVGASVVNALSTELDAVVTQGGKRYYIDFKRGKVQTPMKMIGDAPE 180

Query: 202 K-RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
              GT++ F PDP IF +   +D   L    +  A+L+  +K  ++  +    +      
Sbjct: 181 HEHGTKVHFVPDPDIFTETTIYDDKILTTRIRELAFLNKGLKLTFTDKRADTHEKLE--- 237

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
             F++ GG+K+Y++   E +  +  E    + E+ G    TVE A+ +  +    + ++ 
Sbjct: 238 --FHYEGGIKSYVEFLDEKKETLLDEPIYVEGEQNGI---TVEVALQYTNDYRTNLLTFA 292

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREP 377
           N I T EGGTHESG + ALTR I  YA      +    ++  +D+      ++SV   +P
Sbjct: 293 NNIHTYEGGTHESGFKTALTRVINDYATKQNIFKASDANLSGEDVREGLTAVVSVKHPDP 352

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQR 436
           +F GQTKTKL + DA+   +    D F  +L++NP  A ++++   +        +R + 
Sbjct: 353 QFEGQTKTKLGNADARSVTDRMFSDHFTKFLMENPSIARQIVDKGSLAARARLAAKRARE 412

Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              +K  +    LPGKLAD S      +ELFIVEGDSAGGSAK  R+R  QA+LP+RGKI
Sbjct: 413 VTRKKNGLEISNLPGKLADNSSKDPEISELFIVEGDSAGGSAKSGRSRLTQAILPIRGKI 472

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556
           LNV  A  EKI  N++I  L  A+G     ++  E  RY K+IIMTDADVDGAHI +LLL
Sbjct: 473 LNVEKASMEKILANEEIRTLFTAMGTGFGQEFDVEKARYHKLIIMTDADVDGAHIRTLLL 532

Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616
           T FY+ M  ++E  ++++  PPL+R+ QG    Y   +E  Q +L   +     K E+ R
Sbjct: 533 TLFYRYMRPIVEAGYVYIAQPPLYRVKQGKMMRYIDSDEELQDVLGTLQPS--PKPEVQR 590

Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           +KGLGEM ASQL ET MD   R +LRV +       ++       LMG + + R  FI+E
Sbjct: 591 YKGLGEMDASQLWETTMDPENRRMLRVNVED----AEEADQIFEMLMGDRVEPRRLFIEE 646

Query: 677 RASFID 682
            A ++D
Sbjct: 647 NAVYMD 652


>gi|283470569|emb|CAQ49780.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 665

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 241/654 (36%), Positives = 361/654 (55%), Gaps = 31/654 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  +NY   SI++LEGLE VR RPGMYIG TD++ LHHL  E++DN++DEV+ GY N I+
Sbjct: 4   NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 63

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+++ +G ++  DNGRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG
Sbjct: 64  VTINKDGSISTEDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 121

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS+ L V + R   I+ Q F  G   S    K+    K GT++TF+PD  IF  
Sbjct: 122 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 181

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L +  Q  A+L   +K   +  +   E      +E +++  G+K ++    E
Sbjct: 182 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKE-----RQEHYHYEEGIKEFVSYVNE 236

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            + ++  ++ T   E  G     V+ A  + ++    I S+ N + T +GGTHE G + A
Sbjct: 237 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 292

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
           +TR    YA        +  ++  +D+      ++SV I E   +F GQTK+KL + +A+
Sbjct: 293 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR 352

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450
             V++ + D    YL +    +  L++  I+  + R   RK RE  R     K     L 
Sbjct: 353 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 412

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  E I  N
Sbjct: 413 GKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 472

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    + ++ ED  Y +VIIMTDAD DGAHI  LLLTFF++ M  L++  
Sbjct: 473 EEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 532

Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +F+  PPL+++ +G     +  YA  +E   K+ +E  K       + R+KGLGEM   
Sbjct: 533 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNPE 588

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET M+ + RTL+RV++  ++ S K     +  LMG K   R ++I++   F
Sbjct: 589 QLWETTMNPDTRTLIRVQVEDEVRSSKR----VTTLMGDKVQPRREWIEKHVEF 638


>gi|255562314|ref|XP_002522164.1| DNA gyrase subunit B, putative [Ricinus communis]
 gi|223538602|gb|EEF40205.1| DNA gyrase subunit B, putative [Ricinus communis]
          Length = 732

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 247/678 (36%), Positives = 384/678 (56%), Gaps = 22/678 (3%)

Query: 17  QGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHH 76
           Q +            +  F   ++S  Y +  I++L+GLEPVR RPGMYIG T  + LHH
Sbjct: 64  QNAGSARAFMSSSTATEPFQESASSKAYGSDQIQVLKGLEPVRKRPGMYIGSTGPRGLHH 123

Query: 77  LFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTT 136
           L  E++DNA+DE  AGYA+ ++V L  +  +++ DNGRGIP + HP    KS LE +LT 
Sbjct: 124 LVYEILDNAIDEAQAGYASRVDVILHSDNSVSISDNGRGIPTDLHP-VTKKSALETVLTV 182

Query: 137 LHAGGKF--DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           LHAGGKF   NS Y +SGGLHGVG+SVVNALS+ L VTV R    + Q++SRG P++ L 
Sbjct: 183 LHAGGKFGGSNSGYSVSGGLHGVGLSVVNALSEGLEVTVWRDGMEYRQRYSRGNPVTILM 242

Query: 195 KKE---KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
                 + R+++GT + F PD ++F     FD   +    +  A+L+ ++      +   
Sbjct: 243 CHSLAVESRDRQGTCVRFWPDKEVFTTAIEFDYNTIAGRVRELAFLNPKLTITLKKEDND 302

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
            EK    + +E+++ GGL  Y++    ++  +   +  GK     T    ++W       
Sbjct: 303 PEKN---QYDEYFYAGGLIEYVKWLNTDKKPLHDVVGFGKEIDGITIDMALQWCS--DAY 357

Query: 312 NPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369
           +  I  Y N+I T +GGTH  G + +LTR +    + ++   ++ I++  + +      I
Sbjct: 358 SDTILGYANSIRTIDGGTHIDGFKASLTRTLNSLGKKSKIIKEKDINLSGEHVREGLTCI 417

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           +SV +  PEF GQTKT+L + + ++ V+ ++++    YL  +P     +L   +   +  
Sbjct: 418 VSVKVPSPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLNALKAA 477

Query: 430 LRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
           L  +K RE V +K+ +R   LPGKLADCS      +E+FIVEGDSAGGSAKQ R+R  QA
Sbjct: 478 LAAKKARELVRQKSVLRTSSLPGKLADCSSTNPEESEIFIVEGDSAGGSAKQGRDRRFQA 537

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVD 547
           +LPLRGKILN+       +  N++I +L+  LG   + +  +++ LRY K+II+TDADVD
Sbjct: 538 ILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKEALRYHKIIILTDADVD 597

Query: 548 GAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607
           GAHI +LLLTFF++    L E+  +++  PPL+++ +G +  Y +DE   +K+   F ++
Sbjct: 598 GAHIRTLLLTFFFRYQKALFEEGCIYVGVPPLYKVERGKQVYYCYDEAELKKLRSSFPQN 657

Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667
                 I RFKGLGEM+  QL ET MD  +R L ++ +        +     + LMG + 
Sbjct: 658 --ASYNIQRFKGLGEMMPLQLWETTMDPEQRLLKQLVVED----AAEANVVFSSLMGARV 711

Query: 668 DERFKFIQERASFIDDVG 685
           D R + IQ  A  + ++ 
Sbjct: 712 DVRKELIQSSARAV-NID 728


>gi|325696560|gb|EGD38450.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis
           SK160]
          Length = 647

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 240/653 (36%), Positives = 367/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVADHGRGMPVGKH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R  T++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMPDDTIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   V+   +  +   E        EF++  G++ ++    E+
Sbjct: 186 TDFKYNTIAERLKESAFLLKNVRLSLTDARTGEE-------VEFHYENGVEDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++      + E+ G     V+ A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KETLTPV-LYFEGEESG---FQVQVALQYNDGYTDNILSFVNNVRTKDGGTHETGLKTAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEAHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V++ + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 AVDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E   
Sbjct: 475 EINTMIYTIGAGVGTDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534

Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G        YA  +     +  +F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFGKGAM----LQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+ + RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPDTRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|322517179|ref|ZP_08070062.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus
           vestibularis ATCC 49124]
 gi|322124238|gb|EFX95754.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus
           vestibularis ATCC 49124]
          Length = 649

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 234/653 (35%), Positives = 368/653 (56%), Gaps = 34/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ ++I V+L
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGDVIAVTL 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G ++V D+GRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NNDGSVSVSDSGRGMPTGMH--AMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R  +++ Q+F  G  P++ LEK  K  ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGSVYRQRFENGGHPVTGLEKIGKAPKSKTGTKVTFMPDASIFSTT 186

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   V    +  +   E      +EEF++  G++ ++    E+
Sbjct: 187 -DFKFNTISERLKESAFLLKNVTMTLTDLRGEEE-----VREEFHYENGVQDFVSYLNED 240

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++  I+             +E A+ + +   +   S+ N + T +GGTHE+G + A+
Sbjct: 241 KETLTPVIYI----DGDQQEFHLEVALQYNDGYSDNILSFVNNVRTKDGGTHETGFKSAI 296

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       ++S+ +     +F GQTK KL S  A+ 
Sbjct: 297 TKALNDYARKTGLLKEKDKNLEGSDYREGLSAVISLLVPEEHLQFEGQTKDKLGSPLARP 356

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451
            V++ + +   ++L++N   A+ L+   I+  + R   RK R+ +R     K       G
Sbjct: 357 IVDSIVSEHLTYFLMENGDLASNLVRKAIKARDAREAARKARDASRNGKKNKKDKGLLSG 416

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL       A   EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N+
Sbjct: 417 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 476

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G      +  +D+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 477 EINTMIYTIGAGVGVDFNLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536

Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G        YA  +   +++ ++F +       + R+KGLGEM A Q
Sbjct: 537 VYIALPPLYKMSKGKGKKEVVEYAWTDGELEELRQKFGRGAI----LQRYKGLGEMNADQ 592

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET MD   RTL+RV I+     L   +  ++ LMG K   R ++I++   F
Sbjct: 593 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKPAPRRQWIEDNVKF 641


>gi|73916418|gb|AAZ93077.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
          Length = 647

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 238/653 (36%), Positives = 365/653 (55%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS+ L V + R   ++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSNWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V    +  +         E  EF++  G++ ++    E+
Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           + +++      + E  G     VE A+ + +   +   S+ N + T +GGTHE+G + A+
Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGFKSAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAVVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+L LRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILSLRGKVVNTAKAKMADILKNK 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +++ ++F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|322372517|ref|ZP_08047053.1| DNA topoisomerase IV, B subunit [Streptococcus sp. C150]
 gi|321277559|gb|EFX54628.1| DNA topoisomerase IV, B subunit [Streptococcus sp. C150]
          Length = 649

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 234/653 (35%), Positives = 367/653 (56%), Gaps = 34/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ ++I V+L
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGDVIAVTL 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G ++V D+GRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSVSVSDSGRGMPTGMH--AMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R  +++ Q+F  G  P++ LEK  K  ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGSVYRQRFENGGHPVTGLEKIGKAPKSKTGTKVTFMPDASIFSTT 186

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   V    +  +   E       EEF++  G++ ++    E+
Sbjct: 187 -DFKFNTISERLKESAFLLKNVTMTLTDLRGEEEIR-----EEFHYENGVQDFVTYLNED 240

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++  I+             +E A+ + +   +   S+ N + T +GGTHE+G + A+
Sbjct: 241 KETLTPVIYI----DGDQQEFHLEVALQYNDGYSDNILSFVNNVRTKDGGTHETGFKSAI 296

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+    YA  T    ++  ++   D       ++S+ +     +F GQTK KL S  A+ 
Sbjct: 297 TKAFNDYARKTGLLKEKDKNLEGSDYREGLSAVISLLVPEEHLQFEGQTKDKLGSPLARP 356

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451
            V++ + +   ++L++N   A+ L+   I+  + R   RK R+ +R     K       G
Sbjct: 357 IVDSIVSEHLTYFLMENGDLASNLVRKAIKARDAREAARKARDASRNGKKNKKDKGLLSG 416

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL       A   EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N+
Sbjct: 417 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 476

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  +D+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 477 EINTMIYTIGAGVGADFNLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536

Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G        YA  +   +++ ++F +       + R+KGLGEM A Q
Sbjct: 537 VYIALPPLYKMSKGKGKKEVVEYAWTDGELEELRQKFGRGAL----LQRYKGLGEMNADQ 592

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET MD   RTL+RV I+     L   +  ++ LMG K   R ++I++   F
Sbjct: 593 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKPAPRRQWIEDNVKF 641


>gi|239631506|ref|ZP_04674537.1| DNA topoisomerase IV subunit B [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239525971|gb|EEQ64972.1| DNA topoisomerase IV subunit B [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 670

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 247/655 (37%), Positives = 365/655 (55%), Gaps = 35/655 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
            A+  Y+ SSI++L GLE VR RPGMYIG TD + LHHL  E++DN++DE +AG+ + I 
Sbjct: 3   KATQAYNDSSIQVLHGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNSVDEALAGFGDEIN 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +  +TV D+GRG+P   HP    K T+E+ILT LHAGGKF+ ++Y+ SGGLHGVG
Sbjct: 63  VTIHADNSVTVQDHGRGMPTGMHP--SGKPTIEVILTVLHAGGKFNQNSYKTSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
            SVVNALS+ L V V R    F + F + G P   L+K  KV    GT ITF+PDP IF 
Sbjct: 121 SSVVNALSESLTVRVVRDKHAFEEHFINGGHPDGSLQKLGKVNEPNGTTITFKPDPTIFQ 180

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F    L +  +  A+L   +    + ++         + + +++P GL ++++   
Sbjct: 181 TTV-FSYDTLAERLRESAFLLKNITINLTDER-------TGKHDSYHYPDGLVSFVKYLN 232

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRV 336
           E +  +S  I   + +K G     V++A  + +   E    + N + T +GGTHE GLR 
Sbjct: 233 EGKDALSQVIN-FEGKKDGI---VVDFAGQYNDGYSENLISFVNNVRTGDGGTHEIGLRS 288

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392
            +TR   ++A       +R  ++   D+     GILSV I E   +F GQTK KL +  A
Sbjct: 289 GMTRAFNEFARKVGLLKERDKNLEGSDVREGFAGILSVRIPEEILQFEGQTKGKLGTPQA 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL--- 449
           +  V+  + D    +L++N  E+ +L+   ++  + R   RK R+ +R    RK      
Sbjct: 349 RTVVDGIVYDKLSTFLMENGEESQELVRKAVKARDAREAARKARDDSRTGRKRKKDQGLL 408

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
            GKL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + I  
Sbjct: 409 SGKLTPAQTKNPKRNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIVK 468

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N++I  ++  +G    + +  +   Y+K+IIMTDAD DGAHI  LLLTFFY+ M  LI+ 
Sbjct: 469 NEEINTMIYTIGAGVGADFDLQQANYDKIIIMTDADTDGAHIQILLLTFFYRYMRPLIDA 528

Query: 570 KHLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
             +++  PPL+R+ +G    TK  YA  +E   K  +   K       ++RFKGLGEM A
Sbjct: 529 GRIYIALPPLYRLQKGAGAKTKISYAWTDEELAKETKAMGK----GYTLTRFKGLGEMNA 584

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            QL ET M+   RTL+RV I+      +  +  +  LMG + + R ++I+    F
Sbjct: 585 DQLWETTMNPETRTLIRVRIDD----AQLAERRVTTLMGDRVEPRREWIEHNVKF 635


>gi|1708090|sp|P50075|GYRBS_STRSH RecName: Full=DNA gyrase subunit B, novobiocin-sensitive
 gi|581743|emb|CAA78952.1| gyrase B (novobiocin-sensitive) [Streptomyces caeruleus]
          Length = 684

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 248/689 (35%), Positives = 377/689 (54%), Gaps = 30/689 (4%)

Query: 20  SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79
           ++    +   P      N   + +Y+AS+I +LEGL+ VR RPGMYIG T E+ LHHL +
Sbjct: 2   ADSGNPNENTPSVATGENGEVTGSYNASAITVLEGLDAVRKRPGMYIGSTGERGLHHLVT 61

Query: 80  EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139
           EV+DN++DE +AG+A+ I+V++  +G + VVDNGRGIPV   P    K  +E++LT LHA
Sbjct: 62  EVVDNSVDEALAGHADTIDVTILADGGVRVVDNGRGIPVGIVP-SEGKPAVEVVLTVLHA 120

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKF    Y +SGGLHGVG+SVVNALS ++ V V      ++Q +  G+P     + E  
Sbjct: 121 GGKFGGGGYSVSGGLHGVGVSVVNALSTKVAVEVKTDGYRWTQDYKLGVPTRRCAQNEAT 180

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK----- 254
            ++ GT +TF  DP +F     +    L +  Q  A+L+  +    + ++E A+      
Sbjct: 181 -DETGTTVTFWADPDVFET-TEYSFETLSRRFQEMAFLNKGLTLKLTDERESAKAVVGAD 238

Query: 255 -----------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
                              +Y+ GG+  +++     +  +          +      +VE
Sbjct: 239 VAGTDSAETPGEEPVRSVTYYYEGGIVDFVKYLNSRKGDLIHPTVIDIDAEDKERMLSVE 298

Query: 304 WAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISD 360
            A+ W  +  E + S+ NTI T EGGTHE G R A+T  + +YA   +   ++  ++  +
Sbjct: 299 IAMQWNSQYSEGVYSFANTIHTHEGGTHEEGFRAAMTGLVNRYAREKKFLREKDDNLAGE 358

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D+      I+SV + EP+F GQTKTKL + +A+  V+  + +    +  ++P EA  ++ 
Sbjct: 359 DIREGLTAIISVKLGEPQFEGQTKTKLGNTEAKTFVQKIVHEHLTDWFDRHPNEAADIIR 418

Query: 421 WVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
             I+ +  R+  RK R++ R+   +    LPGKL+DC  N     E+FIVEGDSAGGSAK
Sbjct: 419 KSIQAATARVAARKARDLTRRKGLLESASLPGKLSDCQSNDPSKCEIFIVEGDSAGGSAK 478

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
             RN   QA+LP+RGKILNV  A  +KI  N ++  L+ A G      +  E LRY K+I
Sbjct: 479 SGRNPQYQAILPIRGKILNVEKARIDKILQNTEVQALISAFGTGVHEDFDIEKLRYHKII 538

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQ 598
           +M DADVDG HI +LLLTF ++ M  L+E  H++L  PPL++I  G     YA+ +  + 
Sbjct: 539 LMADADVDGQHINTLLLTFLFRFMRPLVEAGHVYLSRPPLYKIKWGRDDFEYAYSDRERD 598

Query: 599 KILEEFKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++E  K++GK   +  I RFKGLGEM A +L+ T MD + R L +V ++          
Sbjct: 599 ALVELGKQNGKRIKEDSIQRFKGLGEMNAEELRITTMDVDHRVLGQVTLDD----AAQAD 654

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           D  + LMG   + R  FIQ  A  +  + 
Sbjct: 655 DLFSVLMGEDVEARRSFIQRNAKDVRFLD 683


>gi|327474459|gb|EGF19865.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis
           SK408]
          Length = 649

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 241/653 (36%), Positives = 366/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVADHGRGMPVGKH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R  T++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMPDDTIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   V+   +  +   E        EF++  G++ ++    E+
Sbjct: 186 TDFKYNTIAERLKESAFLLKNVRLSLTDARTGEE-------VEFHYENGVEDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  ++      + E+ G     V+ A+ + +     I S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KETLTPV-LYFEGEESG---FQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEAHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V++ + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 AVDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E   
Sbjct: 475 EINTMIYTIGAGVGTDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534

Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G        YA  +     +  +F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFGKGAM----LQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|325687511|gb|EGD29532.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis
           SK72]
          Length = 649

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 240/653 (36%), Positives = 367/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVADHGRGMPVGKH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R  T++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMPDDTIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   V+   +  +   E        EF++  G++ ++    E+
Sbjct: 186 TDFKYNTIAERLKESAFLLKNVRLSLTDARTGEE-------VEFHYENGVEDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  ++      + E+ G     V+ A+ + +     I S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KETLTPV-LYFEGEESG---FQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPESHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V++ + +    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 AVDSIVSEKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E   
Sbjct: 475 EINTMIYTIGAGVGTDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534

Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G        YA  +     +  +F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFGKGAL----LQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+ + RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPDTRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|77408988|ref|ZP_00785709.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae COH1]
 gi|77172411|gb|EAO75559.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae COH1]
          Length = 642

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 237/651 (36%), Positives = 365/651 (56%), Gaps = 32/651 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY   +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ N I+V ++
Sbjct: 3   NYGDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGNRIDVIIN 62

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G +TV D+GRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 63  KDGSITVTDHGRGMPTGMH--AMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSVV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           NALS  L V + R   I+ Q+F  G  P++ L+K     ++K GT ++F PD  +F    
Sbjct: 121 NALSSWLEVEIIRDGAIYRQRFENGGKPVTTLKKIGTAPKSKSGTSVSFMPDQSVFSTI- 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    + +  +  A+L   V    + ++         E  EF++  G++ +++   E++
Sbjct: 180 DFKFNTIAERLKESAFLLKNVTLTLTDNRSE-----EAEHLEFHYENGVQDFVEYLNEDK 234

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
             ++  +F    E++      +++   + +    I S+ N + T +GGTHE+GL+ A+T+
Sbjct: 235 ETLTPIMFFEGEEQEFHIEVALQYNDGFSDN---ILSFVNNVRTKDGGTHETGLKSAITK 291

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQRTV 396
            +  YA  T    ++  ++   D       ILS+ +     +F GQTK KL S  A+  V
Sbjct: 292 SMNDYARKTGLLKEKDKNLEGSDYREGLSAILSILVPEEHLQFEGQTKDKLGSPLARPIV 351

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGKL 453
           +  + +   ++L++N   A+ L+   I+  + R   RK R+ +R     K       GKL
Sbjct: 352 DGIVSEKLTYFLMENGDLASNLIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                  A   EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN A A    I  N++I
Sbjct: 412 TPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMADIIKNEEI 471

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++  +G      +  +D+ Y+KVIIMTDAD DGAHI +LLLTFFY+ M  L+E+ H++
Sbjct: 472 NTMIHTIGAGVGPDFNLDDINYDKVIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGHVY 531

Query: 574 LISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G        YA  +   +++ ++F K       + R+KGLGEM A QL 
Sbjct: 532 IALPPLYKMSKGKGKKEIVEYAWTDIELEELRQKFGKGSL----LQRYKGLGEMNADQLW 587

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV I      L   +  +N LMG K   R ++I++   F
Sbjct: 588 ETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVPPRRQWIEDNVKF 634


>gi|294155877|ref|YP_003560261.1| DNA gyrase, B subunit [Mycoplasma crocodyli MP145]
 gi|291599921|gb|ADE19417.1| DNA gyrase, B subunit [Mycoplasma crocodyli MP145]
          Length = 646

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 252/659 (38%), Positives = 369/659 (55%), Gaps = 27/659 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
             ++NY+AS+I+ LEGLE VR RPGMYIG T +  LHH+  E++DN++DE +AG+AN+I+
Sbjct: 2   EKNNNYEASNIKFLEGLEHVRRRPGMYIGTTSKDGLHHMIWEIVDNSVDEAMAGFANIIQ 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           +++  +  + V DNGRGIPV  H +F   S LE++LT L+AGGKF+++ Y++SGGLHGVG
Sbjct: 62  ITITDDDRIIVEDNGRGIPVGIHERF-GISALEVVLTKLNAGGKFESNAYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV--RNKRGTRITFRPDPKIF 216
            SVVNALSD +   V R+  I   +F+ G       +       +  GT+I F PD  I 
Sbjct: 121 ASVVNALSDSMKAWVKREGKIHFAEFANGGVTIKSTEVIGTYEGDSSGTKIEFHPDFTIM 180

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                FD   ++   +  A+L+  +       ++          EEF F  G+  Y+   
Sbjct: 181 EKVP-FDKELVVDHAKQIAHLNKGLFVSVKDLRDNT-------YEEFKFDNGIIDYVNEL 232

Query: 277 LENRSLISSEIFTGKT-----EKKGTHRGTVEWAIAWCEENP--EITSYCNTILTDEGGT 329
            E  + I+ E+   +               VE A  +  + P   I SY N I T EGGT
Sbjct: 233 NEGYTPINQEVIFAEGTYLSVHNGNERSIGVEIAAQYLSDFPRSNIISYANNIATHEGGT 292

Query: 330 HESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H SG   ++ R +  YA      +        +DL      I+SV   +P+F GQTK KL
Sbjct: 293 HVSGFYDSVMRIVNNYAIENGIIKNEAEKFSREDLTEGLTAIISVKHPDPQFEGQTKGKL 352

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRK 446
            S DA+  V     + F+  L +NP+ + K++E  +   + RL     R+   RK+A   
Sbjct: 353 GSKDARMAVNKVFSEVFERLLNENPVLSKKIIENAVYARKGRLAANAARDNAKRKSAFDN 412

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC+   A  +EL++VEG+SAGGSAK  R+R+ QA+LPLRGK+LNV  A  ++
Sbjct: 413 GGLPGKLADCASKNAEVSELYLVEGNSAGGSAKMGRDRNTQAILPLRGKVLNVERARQDR 472

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           + NN++IM LV ALG      +    LRY K++IMTDADVDGAHI +LLLTFFY+    L
Sbjct: 473 VVNNEEIMSLVTALGTSLGDTFNINKLRYHKIVIMTDADVDGAHIRTLLLTFFYRYFKPL 532

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           IE   +++  PPL++I Q     YA+++  K +I+ +   +   KI I R+KGLGEM   
Sbjct: 533 IEYGFIYIAQPPLYKIQQNKTVEYAYNDAQKDEIITKL--NPTQKINIQRYKGLGEMDPE 590

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           QL ET MD   R +L+V+I            + + LMG   + R +FI++ A ++ ++ 
Sbjct: 591 QLWETTMDPKNRKMLQVQIEDAYK----ADWAFSTLMGENVEPRREFIEKNAKYVKNID 645


>gi|59798271|sp|Q6G9K5|PARE_STAAS RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
          Length = 663

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 241/654 (36%), Positives = 361/654 (55%), Gaps = 31/654 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  +NY   SI++LEGLE VR RPGMYIG TD++ LHHL  E++DN++DEV+ GY N I+
Sbjct: 2   NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+++ +G +++ DNGRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG
Sbjct: 62  VTINKDGSISIEDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS+ L V + R   I+ Q F  G   S    K+    K GT++TF+PD  IF  
Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L +  Q  A+L   +K   +  +   E      +E +++  G+K ++    E
Sbjct: 180 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKE-----RQEHYHYEEGIKEFVSYVNE 234

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            + ++  ++ T   E  G     V+ A  + ++    I S+ N + T +GGTHE G + A
Sbjct: 235 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 290

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
           +TR    YA        +  ++  +D+      ++SV I E   +F GQTK+KL + +A+
Sbjct: 291 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR 350

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450
             V++ + D    YL +    +  L++  I+  + R   RK RE  R     K     L 
Sbjct: 351 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 410

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  E I  N
Sbjct: 411 GKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 470

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    + ++ ED  Y +VIIMTDAD DGAHI  LLLTFF++ M  L++  
Sbjct: 471 EEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAD 530

Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +F+  PPL+++ +G     +  YA  +E   K+ +E  K       + R+KGLGEM   
Sbjct: 531 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNPE 586

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET M+   RTL+RV++  ++ S K     +  LMG K   R ++I++   F
Sbjct: 587 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVQPRREWIEKHVEF 636


>gi|325694452|gb|EGD36361.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis
           SK150]
 gi|327489834|gb|EGF21624.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis
           SK1058]
          Length = 649

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 242/653 (37%), Positives = 367/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVADHGRGMPVGKH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R  T++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMPDDTIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   V+   +  +   E        EF++  G++ ++    E+
Sbjct: 186 TDFKYNTIAERLKESAFLLKNVRLSLTDARTGEE-------VEFHYENGVEDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  ++      + E+ G     V+ A+ + +     I S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KETLTPV-LYFEGEESG---FQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEAHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V++ + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 AVDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    S +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E   
Sbjct: 475 EINTMIYTIGAGVGSDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534

Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G        YA  +     +  +F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFGKGAM----LQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+ + RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPDTRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|49486197|ref|YP_043418.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|49244640|emb|CAG43071.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus
           MSSA476]
          Length = 665

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 241/654 (36%), Positives = 361/654 (55%), Gaps = 31/654 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  +NY   SI++LEGLE VR RPGMYIG TD++ LHHL  E++DN++DEV+ GY N I+
Sbjct: 4   NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 63

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+++ +G +++ DNGRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG
Sbjct: 64  VTINKDGSISIEDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 121

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS+ L V + R   I+ Q F  G   S    K+    K GT++TF+PD  IF  
Sbjct: 122 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 181

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L +  Q  A+L   +K   +  +   E      +E +++  G+K ++    E
Sbjct: 182 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKE-----RQEHYHYEEGIKEFVSYVNE 236

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            + ++  ++ T   E  G     V+ A  + ++    I S+ N + T +GGTHE G + A
Sbjct: 237 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 292

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
           +TR    YA        +  ++  +D+      ++SV I E   +F GQTK+KL + +A+
Sbjct: 293 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR 352

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450
             V++ + D    YL +    +  L++  I+  + R   RK RE  R     K     L 
Sbjct: 353 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 412

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  E I  N
Sbjct: 413 GKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 472

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    + ++ ED  Y +VIIMTDAD DGAHI  LLLTFF++ M  L++  
Sbjct: 473 EEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAD 532

Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +F+  PPL+++ +G     +  YA  +E   K+ +E  K       + R+KGLGEM   
Sbjct: 533 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNPE 588

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET M+   RTL+RV++  ++ S K     +  LMG K   R ++I++   F
Sbjct: 589 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVQPRREWIEKHVEF 638


>gi|299536168|ref|ZP_07049482.1| DNA topoisomerase IV subunit B [Lysinibacillus fusiformis ZC1]
 gi|298728443|gb|EFI69004.1| DNA topoisomerase IV subunit B [Lysinibacillus fusiformis ZC1]
          Length = 658

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 240/659 (36%), Positives = 357/659 (54%), Gaps = 35/659 (5%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
             N+ +   Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DE +AG+ 
Sbjct: 1   MTNKQSPSVYNDDAIQVLEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALAGFG 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I V++  +  ++V D GRG+P   H     K T EII T LHAGGKF    Y+ SGGL
Sbjct: 61  SHIIVTIHKDQSMSVRDFGRGMPTGMHKM--GKPTPEIIFTVLHAGGKFGQGGYKTSGGL 118

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDP 213
           HGVG SVVNALS  L VT+ R    + Q+F  G  P++ LE   + + + GT + F PD 
Sbjct: 119 HGVGSSVVNALSTFLEVTIHRDGKKYRQRFEHGGQPVTTLENIGQTK-QTGTLVHFLPDE 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF     F+   L +  +  A+L   +K     ++E        + + F++  G++ ++
Sbjct: 178 TIFSVT-KFNYDTLAERLRESAFLLKGLKIELIDERE------EGKSDVFFYENGIEAFV 230

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
               E + ++    +    + +      VE+A  + +     I S+ N + T +GGTHE+
Sbjct: 231 AYLNEEKDVLHPVKYVEGVQDE----IEVEFAFQYNDGYSETILSFVNNVRTRDGGTHET 286

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLV 388
           G + ALTR   +YA        +  ++   D+      I+SV I E   +F GQTK KL 
Sbjct: 287 GAKAALTRVFNEYARKIGLLKDKDKNLEGTDIREGLAAIVSVRIPEHLLQFEGQTKGKLG 346

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK-- 446
           + +A+  V++ + +   + L +N   +  L+   I   + R   RK RE  R     K  
Sbjct: 347 TSEARSAVDSVVSEQILYVLEENAELSASLVRKAIRAQQVREAARKAREDARNGKKNKKG 406

Query: 447 -LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              L GKL       A   EL++VEGDSAGGSAKQ R+R+ QA+LPLRGK++N   A  +
Sbjct: 407 STILSGKLTPAQSRNAAKNELYLVEGDSAGGSAKQGRDRTFQAILPLRGKVINTEKAKLQ 466

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
            I  N++I  ++ A+G    + +  ED  Y+KV+IMTDAD DGAHI  LLLTFFY+ M  
Sbjct: 467 DIMKNEEISTIIHAIGAGVGTDFAVEDSAYDKVVIMTDADTDGAHIQVLLLTFFYRYMRP 526

Query: 566 LIEQKHLFLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
           LIE   +++  PPL+++++G   K +  YA  E   QK +++  K       + R+KGLG
Sbjct: 527 LIESGKVYIALPPLYKVSKGTGKKEIIEYAWTESDLQKAIKKVGK----GYILQRYKGLG 582

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           EM A QL +T M+   RTL+RV I          +  +  LMG K + R K+I+    F
Sbjct: 583 EMNADQLWDTTMNPETRTLIRVTIEDG----ARAERRVTTLMGDKVEPRRKWIEANVDF 637


>gi|76786737|ref|YP_329857.1| DNA topoisomerase IV subunit B [Streptococcus agalactiae A909]
 gi|76799494|ref|ZP_00781632.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae 18RS21]
 gi|77412830|ref|ZP_00789035.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae 515]
 gi|76561794|gb|ABA44378.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae A909]
 gi|76585155|gb|EAO61775.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae 18RS21]
 gi|77161126|gb|EAO72232.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae 515]
          Length = 642

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 237/651 (36%), Positives = 365/651 (56%), Gaps = 32/651 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY   +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ N I+V ++
Sbjct: 3   NYGDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGNRIDVIIN 62

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G +TV D+GRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 63  KDGSITVTDHGRGMPTGMH--AMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSVV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           NALS  L V + R   I+ Q+F  G  P++ L+K     ++K GT ++F PD  +F    
Sbjct: 121 NALSSWLEVEIIRDGAIYRQRFENGGKPVTTLKKIGTAPKSKSGTSVSFMPDQSVFSTI- 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    + +  +  A+L   V    + ++         E  EF++  G++ +++   E++
Sbjct: 180 DFKFNTIAERLKESAFLLKNVTLTLTDNRSE-----EAEHLEFHYENGVQDFVEYLNEDK 234

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
             ++  +F    E++      +++   + +    I S+ N + T +GGTHE+GL+ A+T+
Sbjct: 235 ETLTPIMFFEGEEQEFHIEVALQYNDGFSDN---ILSFVNNVRTKDGGTHETGLKSAITK 291

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQRTV 396
            +  YA  T    ++  ++   D       ILS+ +     +F GQTK KL S  A+  V
Sbjct: 292 SMNDYARKTGLLKEKDKNLEGSDYREGLSAILSILVPEEHLQFEGQTKDKLGSPLARPIV 351

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGKL 453
           +  + +   ++L++N   A+ L+   I+  + R   RK R+ +R     K       GKL
Sbjct: 352 DGIVSEKLTYFLMENGDLASNLIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                  A   EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN A A    I  N++I
Sbjct: 412 TPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMADIIKNEEI 471

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++  +G      +  +D+ Y+KVIIMTDAD DGAHI +LLLTFFY+ M  L+E+ H++
Sbjct: 472 NTMIHTIGAGVGPDFNIDDINYDKVIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGHVY 531

Query: 574 LISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G        YA  +   +++ ++F K       + R+KGLGEM A QL 
Sbjct: 532 IALPPLYKMSKGKGKKEIVEYAWTDIELEELRQKFGKGSL----LQRYKGLGEMNADQLW 587

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV I      L   +  +N LMG K   R ++I++   F
Sbjct: 588 ETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVPPRRQWIEDNVKF 634


>gi|25011278|ref|NP_735673.1| DNA topoisomerase IV subunit B [Streptococcus agalactiae NEM316]
 gi|77412221|ref|ZP_00788540.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae CJB111]
 gi|23095702|emb|CAD46888.1| unknown [Streptococcus agalactiae NEM316]
 gi|77161728|gb|EAO72720.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae CJB111]
          Length = 649

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 237/651 (36%), Positives = 365/651 (56%), Gaps = 32/651 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY   +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ N I+V ++
Sbjct: 10  NYGDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGNRIDVIIN 69

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G +TV D+GRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 70  KDGSITVTDHGRGMPTGMH--AMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSVV 127

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           NALS  L V + R   I+ Q+F  G  P++ L+K     ++K GT ++F PD  +F    
Sbjct: 128 NALSSWLEVEIIRDGAIYRQRFENGGKPVTTLKKIGTAPKSKSGTSVSFMPDQSVFSTI- 186

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    + +  +  A+L   V    + ++         E  EF++  G++ +++   E++
Sbjct: 187 DFKFNTIAERLKESAFLLKNVTLTLTDNRSE-----EAEHLEFHYENGVQDFVEYLNEDK 241

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
             ++  +F    E++      +++   + +    I S+ N + T +GGTHE+GL+ A+T+
Sbjct: 242 ETLTPIMFFEGEEQEFHIEVALQYNDGFSDN---ILSFVNNVRTKDGGTHETGLKSAITK 298

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQRTV 396
            +  YA  T    ++  ++   D       ILS+ +     +F GQTK KL S  A+  V
Sbjct: 299 SMNDYARKTGLLKEKDKNLEGSDYREGLSAILSILVPEEHLQFEGQTKDKLGSPLARPIV 358

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGKL 453
           +  + +   ++L++N   A+ L+   I+  + R   RK R+ +R     K       GKL
Sbjct: 359 DGIVSEKLTYFLMENGDLASNLIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSGKL 418

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                  A   EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN A A    I  N++I
Sbjct: 419 TPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMADIIKNEEI 478

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++  +G      +  +D+ Y+KVIIMTDAD DGAHI +LLLTFFY+ M  L+E+ H++
Sbjct: 479 NTMIHTIGAGVGPDFNIDDINYDKVIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGHVY 538

Query: 574 LISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G        YA  +   +++ ++F K       + R+KGLGEM A QL 
Sbjct: 539 IALPPLYKMSKGKGKKEIVEYAWTDIELEELRQKFGKGSL----LQRYKGLGEMNADQLW 594

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV I      L   +  +N LMG K   R ++I++   F
Sbjct: 595 ETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVPPRRQWIEDNVKF 641


>gi|324991101|gb|EGC23035.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis
           SK353]
          Length = 649

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 241/653 (36%), Positives = 367/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVADHGRGMPVGKH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R  T++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMPDDTIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   V+   +  +   E        EF++  G++ ++    E+
Sbjct: 186 TDFKYNTIAERLKESAFLLKNVRLSLTDARTGEE-------VEFHYENGVEDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  ++      + E+ G     V+ A+ + +     I S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KETLTPV-LYFEGEESG---FQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPESHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V++ + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 AVDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E   
Sbjct: 475 EINTMIYTIGAGVGTDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534

Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G        YA  +     +  +F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFGKGAM----LQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+ + RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPDTRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|327469984|gb|EGF15448.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis
           SK330]
          Length = 649

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 241/653 (36%), Positives = 367/653 (56%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVADHGRGMPVGKH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R  T++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMPDDTIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   V+   +  +   E        EF++  G++ ++    E+
Sbjct: 186 TDFKYNTIAERLKESAFLLKNVRLSLTDARTGEE-------VEFHYENGVEDFVTYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  ++      + E+ G     V+ A+ + +     I S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KETLTPV-LYFEGEESG---FQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEAHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V++ + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 AVDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E   
Sbjct: 475 EINTMIYTIGAGVGTDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534

Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G        YA  +     +  +F K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFGKGAM----LQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+ + RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPDTRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|54021970|ref|YP_116212.1| DNA gyrase subunit B [Nocardia farcinica IFM 10152]
 gi|54013478|dbj|BAD54848.1| putative DNA gyrase B subunit [Nocardia farcinica IFM 10152]
          Length = 696

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 246/703 (34%), Positives = 378/703 (53%), Gaps = 48/703 (6%)

Query: 18  GSSEKLKKSGEIPDSPAFANQSASD--NYDASSIRILEGLEPVRMRPGMYIGGTDEKALH 75
            +     K    P +   +N+S S   NY ASSI +LEGLE VR RPGMYIG T E+ LH
Sbjct: 6   ATRRSASKESYRPVAAKHSNESGSKSTNYGASSITVLEGLEAVRKRPGMYIGSTGERGLH 65

Query: 76  HLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILT 135
           HL  EV+DN++DE +AGYA  ++V+L  +G + VVD+GRGIPVE H +     T+E+++T
Sbjct: 66  HLIWEVVDNSVDEAMAGYATRVDVTLLADGGVEVVDDGRGIPVEMHAQ--GIPTVEVVMT 123

Query: 136 TLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK 195
            LHAGGKFD+ +Y +SGGLHGVGISVVNALS  + V +      +SQ +    P   ++ 
Sbjct: 124 QLHAGGKFDSESYAVSGGLHGVGISVVNALSSRVEVEIDVDGYHWSQTYKEATPSKLVK- 182

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK- 254
             +  ++ GT + F  DP+IF     ++   + +  Q  A+L+  +    + ++      
Sbjct: 183 -GEPTDRTGTTVRFWADPEIFET-TTYNFETVARRLQEMAFLNKGLTITLTDERVSESDV 240

Query: 255 -----------------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGK 291
                                      +   +++PGGL+ +++     +  I + + +  
Sbjct: 241 TDEIVSETAEAPKHGEPTGEAASEHKVKTRTYHYPGGLEDFVRHINRTKQAIHNSVVSFT 300

Query: 292 TEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
            +  G     +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +
Sbjct: 301 GKGTGH---ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKK 357

Query: 351 NKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
             +    ++  DD+      I+SV + EP+F GQTKTKL + + +  V+    +   H+ 
Sbjct: 358 LLKEKDGNLTGDDIREGLAAIVSVKVAEPQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWF 417

Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
             NP +A  +++  +  ++ R+  RK RE V RK+A     LPGKLADC       +E++
Sbjct: 418 EANPADAKTIVQKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIY 477

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +K+  N ++  ++ A G     +
Sbjct: 478 IVEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDKVLKNNEVQSIITAFGTGIHDE 537

Query: 528 YREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT- 586
           +    LRY K+++M DADVDG HI++LLLT  ++ M  L+E  H++L  PPL+++     
Sbjct: 538 FDISKLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLVEHGHVYLAQPPLYKLKWQRS 597

Query: 587 KSVYAHDEEHKQKILEEFKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLR 642
           +  +A+ +  +  +LE     GK KI     I R+KGLGEM   +L ET MD + R L +
Sbjct: 598 EPEFAYSDRERDGLLERGLAAGK-KINKDDGIQRYKGLGEMNPKELWETTMDPSVRVLRQ 656

Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           V ++          +  + LMG   + R  FI   A  +  + 
Sbjct: 657 VTLDD----AAAADELFSVLMGEDVEARRSFITRNAKDVRFLD 695


>gi|291446126|ref|ZP_06585516.1| gyrase B [Streptomyces roseosporus NRRL 15998]
 gi|291349073|gb|EFE75977.1| gyrase B [Streptomyces roseosporus NRRL 15998]
          Length = 682

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 249/687 (36%), Positives = 373/687 (54%), Gaps = 28/687 (4%)

Query: 20  SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79
           ++    +  IP +     +    +YDAS+I +LEGL+ VR RPGMYIG T E+ LHHL  
Sbjct: 2   ADSGNPNENIPSTAGEPGEVPETSYDASAITVLEGLDAVRKRPGMYIGSTGERGLHHLVQ 61

Query: 80  EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139
           EV+DN++DE +AG+A+ I+V++  +G + V+DNGRGIPV   P    K  +E++LT LHA
Sbjct: 62  EVVDNSVDEAMAGHADTIDVTILPDGGVRVIDNGRGIPVGIVP-SEGKPAVEVVLTVLHA 120

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKF    Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL K E  
Sbjct: 121 GGKFGGGGYAVSGGLHGVGVSVVNALSTRVSVEVKTDGYRWTQDYKLGVPTAPLAKHEAT 180

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE------ 253
               GT +TF  D  IF     +    L +  Q  A+L+  +    + ++E A+      
Sbjct: 181 EE-TGTTVTFWADGDIFET-TEYSFETLSRRFQEMAFLNKGLTLKLTDERESAKATAGAD 238

Query: 254 --------KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
                   +        +++  G+  +++     +  +  +       +      +VE A
Sbjct: 239 SADAAEPAEAEAARSVTYHYENGIVDFVKYLNSRKGDVIHQSVIDIEAEDKDRLLSVEIA 298

Query: 306 IAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDL 362
           + W  +    + S+ N I T EGGTHE G R ALT  + +YA   +   ++  ++  +D+
Sbjct: 299 MQWNTQYTEGVYSFANAIHTHEGGTHEEGFRAALTSLVNRYARDKKLLREKDDNLTGEDV 358

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
                 I+SV + EP+F GQTKTKL + +A+  V+  + +    +  +NP EA  ++   
Sbjct: 359 REGLTAIISVKLGEPQFEGQTKTKLGNTEAKTFVQKVVHEQLTDWFDRNPNEAADIIRKG 418

Query: 423 IERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
           I  S  R+  RK R++ R+   +    LPGKL+DC  N     E+FIVEGDSAGGSAK  
Sbjct: 419 IAASTARVAARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSG 478

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541
           RN   QA+LP+RGKILNV  A  +KI  N ++  L+ A G      +  E LRY K+I+M
Sbjct: 479 RNPMYQAILPIRGKILNVEKARIDKILQNTEVQALISAFGTGVHEDFDIEKLRYHKIILM 538

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKI 600
            DADVDG HI +LLLTF ++ M  L+E  H++L  PPL++I  G     YA+ +  +  +
Sbjct: 539 ADADVDGQHINTLLLTFLFRFMKPLVEAGHVYLSRPPLYKIKWGRDDFEYAYSDRERDAL 598

Query: 601 LEEFKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           +   K++GK   +  I RFKGLGEM A +L+ T MD + R L +V ++          D 
Sbjct: 599 VALGKQNGKRIREDSIQRFKGLGEMNAEELRVTTMDIDHRVLGQVTLDD----AAQADDL 654

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            + LMG   + R  FIQ  A  +  + 
Sbjct: 655 FSVLMGEDVEARRSFIQRNAKDVRFLD 681


>gi|329666396|gb|AEB92344.1| DNA gyrase subunit B [Lactobacillus johnsonii DPC 6026]
          Length = 655

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 247/669 (36%), Positives = 373/669 (55%), Gaps = 20/669 (2%)

Query: 23  LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82
            +   +   + A   +  +D Y+AS I++L GLE VR RPGMYIG T  + LHHL  E+I
Sbjct: 2   AEDKSKAALNKAKDFEKRADTYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEII 61

Query: 83  DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142
           DN++DE +AG+A  IE++++ +G +TV D+GRGIPV+   K   +  LE + T LHAGGK
Sbjct: 62  DNSIDERLAGFATKIEITVNEDGSVTVQDDGRGIPVDIQAK-TGRPALETVFTVLHAGGK 120

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-N 201
           F    Y++SGGLHGVG SVVNALS +L VTV R    ++  F  G  +  +++   V   
Sbjct: 121 FGGGGYKVSGGLHGVGASVVNALSTKLEVTVMRDGKKYAISFDHGRVVGEMKQVGTVPLE 180

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           + GT + F PDP IF +   FD   L    +  A+L+  +K  ++  ++ +      E +
Sbjct: 181 EHGTIVRFYPDPDIFTETITFDDKILKNRIRELAFLNKGLKLTFTDKRKES-----AETD 235

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            ++F GG+K Y+    + + ++  E    +   +G     VE A+ +       + ++ N
Sbjct: 236 VYHFEGGIKEYVAFLNKGQEVLFDEPIYVEGNYEGI---DVEVALQYTNGYKTTLMTFAN 292

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I T EGG HE+G + ALTR +  YA   +    +  ++  +D+      ++SV    P+
Sbjct: 293 NIHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGITAVVSVKHPSPQ 352

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQRE 437
           F GQTKTKL + DA+  V+ A  + F  +L++NP    K++E   +        +R +  
Sbjct: 353 FEGQTKTKLGNSDARTAVDRAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREV 412

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
             +K+ +    LPGKLAD + N    +ELFIVEG+SAGGSAKQ R+R  QA+LP+RGKIL
Sbjct: 413 TRKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKIL 472

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557
           NV  A  ++I  NQ+I  L  ALG    + +     RY K+IIMTDADVDGAHI +LLLT
Sbjct: 473 NVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIRTLLLT 532

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
            FY  M  +IE+ ++++  PPL+++ QG    Y   +E     L   +     K  + R+
Sbjct: 533 LFYNYMRPMIEKGYVYIARPPLYQVRQGKVEKYLDTDEELHDYLGTLQPS--PKPIVQRY 590

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           KGLGEM   QL ET M+   R L RV         +D     + LMG +   R +FI++ 
Sbjct: 591 KGLGEMDPEQLWETTMNPENRRLDRVSPEY----AEDADKIFDLLMGNEVGPRREFIEKN 646

Query: 678 ASFIDDVGT 686
           A +++++  
Sbjct: 647 AKYVENLDA 655


>gi|116494894|ref|YP_806628.1| DNA topoisomerase IV subunit B [Lactobacillus casei ATCC 334]
 gi|116105044|gb|ABJ70186.1| DNA topoisomerase IV subunit B [Lactobacillus casei ATCC 334]
          Length = 670

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 247/655 (37%), Positives = 365/655 (55%), Gaps = 35/655 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
            A+  Y+ SSI++L GLE VR RPGMYIG TD + LHHL  E++DN++DE +AG+ + I 
Sbjct: 3   KATQAYNDSSIQVLHGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNSVDEALAGFGDEIN 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +  +TV D+GRG+P   HP    K T+E+ILT LHAGGKF+ ++Y+ SGGLHGVG
Sbjct: 63  VTIHADNSVTVQDHGRGMPTGMHP--SGKPTIEVILTVLHAGGKFNQNSYKTSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
            SVVNALS+ L V V R    F + F + G P   L+K  KV    GT ITF+PDP IF 
Sbjct: 121 SSVVNALSESLTVRVVRDKHAFEEHFINGGHPDGSLQKLGKVNEPNGTTITFKPDPTIFQ 180

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F    L +  +  A+L   +    + ++         + + +++P GL ++++   
Sbjct: 181 TTV-FSYDTLAERLRESAFLLKNITINLTDER-------TGKHDSYHYPDGLVSFVKYLN 232

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRV 336
           E +  +S  I   + +K G     V++A  + +   E    + N + T +GGTHE GLR 
Sbjct: 233 EGKDALSQVIN-FEGKKDGI---VVDFAGQYNDGYSENLISFVNNVRTGDGGTHEIGLRS 288

Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392
            +TR   ++A       +R  ++   D+     GILSV I E   +F GQTK KL +  A
Sbjct: 289 GMTRAFNEFARKVGLLRERDKNLEGSDVREGFAGILSVRIPEEILQFEGQTKGKLGTPQA 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL--- 449
           +  V+  + D    +L++N  E+ +L+   ++  + R   RK R+ +R    RK      
Sbjct: 349 RTVVDGIVYDKLSTFLMENGEESQELVRKAVKARDAREAARKARDDSRTGRKRKKDQGLL 408

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
            GKL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + I  
Sbjct: 409 SGKLTPAQTKNPKRNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIVK 468

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N++I  ++  +G    + +  +   Y+K+IIMTDAD DGAHI  LLLTFFY+ M  LI+ 
Sbjct: 469 NEEINTMIYTIGAGVGADFDLQQANYDKIIIMTDADTDGAHIQILLLTFFYRYMRPLIDA 528

Query: 570 KHLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
             +++  PPL+R+ +G    TK  YA  +E   K  +   K       ++RFKGLGEM A
Sbjct: 529 GRIYIALPPLYRLQKGAGAKTKISYAWTDEELAKETKAMGK----GYTLTRFKGLGEMNA 584

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            QL ET M+   RTL+RV I+      +  +  +  LMG + + R ++I+    F
Sbjct: 585 DQLWETTMNPETRTLIRVRIDD----AQLAERRVTTLMGDRVEPRREWIEHNVKF 635


>gi|300814729|ref|ZP_07094977.1| DNA gyrase, B subunit [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511116|gb|EFK38368.1| DNA gyrase, B subunit [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 639

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 258/648 (39%), Positives = 379/648 (58%), Gaps = 21/648 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YDA  I++L+GLEPVR RPGMYIG T EK LHHL  EV+DN++DE +AG  + I++ +  
Sbjct: 8   YDAGDIQVLKGLEPVRKRPGMYIGSTGEKGLHHLVYEVVDNSIDEALAGICDHIKIVITK 67

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G   V DNG GIPVE HP+   KST+E +LT LHAGGKFDN  Y++SGGLHGVG+SVVN
Sbjct: 68  DGSCYVEDNGSGIPVEIHPQ-TGKSTVETVLTILHAGGKFDNKAYKVSGGLHGVGVSVVN 126

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222
           ALS  L  T+ R   I+SQ+F RG  +S L++  KV +N+ GT+I F PDP+IF     F
Sbjct: 127 ALSTHLKATIKRNGKIYSQEFQRGKAISSLKEIGKVDKNQTGTKIEFTPDPEIFDTV-EF 185

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  A+L+  +K  ++ ++       I + E +++ GG+K++++     +  
Sbjct: 186 SFDILSKRFREMAFLNKGIKIDFTDER-------INKNEIYHYEGGIKSFVEYINSKKKY 238

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
                       +     ++E AI + +    E+ ++ N I T+EGG+H SG R A+T+ 
Sbjct: 239 -EPIHDEIIYIDEIRENTSIEVAIQYTKSYSEEVLTFANNINTEEGGSHLSGFRSAITKT 297

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +  Y        ++  ++  DD+      +LSV +  P+F GQTK KL + + +  V++ 
Sbjct: 298 VNDYGRKYNFIKEKEENLSGDDIREGMTAVLSVKLPNPQFEGQTKAKLGNSETKGVVDSV 357

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
           + +    +L +NP  +  +LE  +     R   R+ RE++R      + LPGKL DCS  
Sbjct: 358 VSEKLSMFLEENPKTSKVILEKAVAARRARDAARRAREISRAKNNLDMTLPGKLFDCSDV 417

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
            +  +E+F+VEG+SAGGSAK  R+   QAVLPLRGKI+NV  A   K+ N+ +I  ++ A
Sbjct: 418 GSEKSEIFLVEGNSAGGSAKDGRDPEFQAVLPLRGKIMNVEKATEAKMLNSSEIKAMITA 477

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
            G     ++    LRY K+IIMTDADVDGAHI +LLLTFF++ M  LIE  H+++   PL
Sbjct: 478 FGTGYSGEFDISKLRYNKIIIMTDADVDGAHIMTLLLTFFFRYMRPLIENGHVYVAQAPL 537

Query: 580 FRITQGTKS-VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           + + + +K   Y H+EE     L+  +      I I R+KGLGEM   QL ET M+ + R
Sbjct: 538 YGLEKNSKILRYCHNEEELNLALKAHESE--KNINIKRYKGLGEMNYDQLWETTMNPDNR 595

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
            LLRV I        +T D+   LMG + + R +FI E A + D +  
Sbjct: 596 LLLRVNIED----FDETDDTFQMLMGQEVEPRREFISENAQYADYIDA 639


>gi|85708623|ref|ZP_01039689.1| topoisomerase B subunit [Erythrobacter sp. NAP1]
 gi|85690157|gb|EAQ30160.1| topoisomerase B subunit [Erythrobacter sp. NAP1]
          Length = 662

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 338/653 (51%), Positives = 452/653 (69%), Gaps = 10/653 (1%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
              + S +YD+SSI +LEGLEPVR RPGMYIGGTD++ALHHL +EV+DN+MDE +AG+A+
Sbjct: 8   NTPTTSGDYDSSSIEVLEGLEPVRRRPGMYIGGTDDRALHHLAAEVLDNSMDEAVAGHAS 67

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            IEV L+    L++ DNGRGIPV+ HPK+P KSTLE+ILTTLH+GGKF    Y  SGGLH
Sbjct: 68  RIEVRLEEGNRLSISDNGRGIPVDEHPKYPGKSTLEVILTTLHSGGKFSGKAYATSGGLH 127

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS    V VAR   +++Q+F++G    P+E      N+RGT +TF PD +I
Sbjct: 128 GVGVSVVNALSSHTRVEVARDKQLYAQEFAKGHTQGPIEVVGAAPNRRGTTVTFTPDTEI 187

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           FGD   F   RL K+ +SKAYL   V+  W C + +     +P +  F FPGGL  +L  
Sbjct: 188 FGD-RQFKPHRLFKLARSKAYLFAGVEIRWKCAESLTSDD-VPAEATFKFPGGLADHLAE 245

Query: 276 KLENRSLISSEIFTGKT---EKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHE 331
           ++  R  ++++ FTGK    EK G  +G+VEWAIAW    +   + YCNT+ T +GGTHE
Sbjct: 246 QVGQRECVTAQPFTGKQEFPEKDGIGQGSVEWAIAWPLYSDGSTSWYCNTVPTPDGGTHE 305

Query: 332 SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            G+R ALT+G++ + ELT  K+A  I +DD+M  A  +LSVFIR+P+F  QTK +L S +
Sbjct: 306 QGVRGALTKGLRAFGELTGTKKAKDITADDVMTGAEVMLSVFIRDPQFQSQTKDRLTSPE 365

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRL 449
           A R VE A+RD FDH+L  N      LL  V+ER +ERL+R+++RE+ RKTA   +KLRL
Sbjct: 366 AARLVEAAVRDHFDHFLTDNMDRGKALLGEVMERMDERLKRKQEREIKRKTATNAKKLRL 425

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKL DCS      TELFIVEGDSAGGSAKQAR+R  QA+LP+RGKILNVASA ++KIR 
Sbjct: 426 PGKLTDCSGEGERETELFIVEGDSAGGSAKQARDRKTQAILPIRGKILNVASATADKIRA 485

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N +I DL  A+GC TR     E LRY+++IIMTDADVDGAHIA+LL+TFF+QEM +++ +
Sbjct: 486 NSEIADLTLAMGCGTRKDCDPESLRYDRIIIMTDADVDGAHIATLLMTFFFQEMPEVVRK 545

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
            HLFL  PPL+R+T G +S YA D+ H+ ++ E   K    K++++RFKGLGEM   QL+
Sbjct: 546 GHLFLAQPPLYRLTAGKESRYARDDAHRAELEETVFK--GKKVDVARFKGLGEMNPQQLR 603

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           ET M    R+L+R+ + ++       +  +++LMG   + RF FIQ RA  +D
Sbjct: 604 ETTMHPETRSLVRITLPQEFEDRAGVKVLVDQLMGKNPEHRFNFIQNRAGEMD 656


>gi|108796987|ref|YP_637184.1| DNA gyrase subunit B [Mycobacterium sp. MCS]
 gi|119866071|ref|YP_936023.1| DNA gyrase subunit B [Mycobacterium sp. KMS]
 gi|126432619|ref|YP_001068310.1| DNA gyrase subunit B [Mycobacterium sp. JLS]
 gi|108767406|gb|ABG06128.1| DNA gyrase subunit B [Mycobacterium sp. MCS]
 gi|119692160|gb|ABL89233.1| DNA gyrase subunit B [Mycobacterium sp. KMS]
 gi|126232419|gb|ABN95819.1| DNA gyrase subunit B [Mycobacterium sp. JLS]
          Length = 675

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 245/685 (35%), Positives = 366/685 (53%), Gaps = 45/685 (6%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A   ++A   Y A SI++LEGLE VR RPGMYIG T E+ LHHL  EV+DNA+DE +AG+
Sbjct: 2   AAQKKNAPAEYGADSIKVLEGLEAVRKRPGMYIGSTGERGLHHLVWEVVDNAVDEAMAGF 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A  +EV +  NG + V D+GRGIPV  H       T+++++T LHAGGKF+   Y++SGG
Sbjct: 62  ATKVEVRILENGGVQVTDDGRGIPVAMH--STGIPTVDVVMTVLHAGGKFEEGAYQVSGG 119

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS  L   +      + Q + R +P +   K+ +   K GT I F  DP
Sbjct: 120 LHGVGVSVVNALSTRLEADIRTDGYEWFQTYDRSVPGTL--KQGEKTKKTGTTIRFWADP 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE-------------------- 253
            IF     +D   + +  Q  A+L+  +    + ++  AE                    
Sbjct: 178 DIFET-TSYDFETIARRLQEMAFLNKGLTIELTDERVTAEEVVDDVVSDHAEAPKSAEEK 236

Query: 254 -----KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
                K    +   F++PGGL  +++     ++ I   +     + +G     VE A+ W
Sbjct: 237 SAEAAKPQKVKHRVFHYPGGLVDFVKHINRTKTPIQPSVIDFDGKGEGH---EVEIAMQW 293

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMIS 365
                  + ++ NTI T EGGTHE G R ALT  + KY   +     +  ++  DD+   
Sbjct: 294 NAGYSESVHTFANTINTHEGGTHEEGFRTALTSVVNKYAKDKKLLKDKDPNLTGDDIREG 353

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP EA  ++   +  
Sbjct: 354 LAAVISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEQLSHWFEANPAEAKTVVNKAVSS 413

Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           ++ RL  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGGSAK  R+ 
Sbjct: 414 AQARLAARKARELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKSGRDS 473

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY K+++M DA
Sbjct: 474 MFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDISKLRYHKIVLMADA 533

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKS-VYAHDEEHKQKILEE 603
           DVDG HI++LLLT  ++ M  LIE  H+FL  PPL+++     +  +A+ +  +  +LE 
Sbjct: 534 DVDGQHISTLLLTLLFRFMKPLIENGHVFLAQPPLYKLKWQRSTPEFAYSDRERDGLLEA 593

Query: 604 FKKHGKG---KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660
            +  GK       I R+KGLGEM A +L ET MD + R L ++ ++          +  +
Sbjct: 594 GRAAGKRINADDGIQRYKGLGEMDAKELWETTMDPSVRVLRQITLDD----AAAADELFS 649

Query: 661 KLMGTKADERFKFIQERASFIDDVG 685
            LMG   + R  FI   A  +  + 
Sbjct: 650 ILMGEDVEARRSFITRNAKDVRFLD 674


>gi|46199524|ref|YP_005191.1| DNA gyrase subunit B [Thermus thermophilus HB27]
 gi|46197150|gb|AAS81564.1| DNA gyrase subunit B [Thermus thermophilus HB27]
          Length = 640

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 267/652 (40%), Positives = 368/652 (56%), Gaps = 29/652 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NYDAS+IR+L+GLE VR RP MYIGGT  +  HHLF E++DNA+DE +AGYA  I V L+
Sbjct: 8   NYDASAIRVLKGLEGVRHRPAMYIGGTGVEGYHHLFKEILDNAVDEALAGYATEILVRLN 67

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G LTV DNGRGIPV+  P+   K  +E+I TTLH+GGKF+   Y++SGGLHGVG SVV
Sbjct: 68  EDGSLTVEDNGRGIPVDLMPE-EGKPAVEVIYTTLHSGGKFEQGAYKVSGGLHGVGASVV 126

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221
           NALS+   V V R+       FSRG    PL    +  R K GTR+TF+PDP+IFG+   
Sbjct: 127 NALSEWTVVEVFREGKHHRIAFSRGEVTEPLRVVGEAPRGKTGTRVTFKPDPEIFGN-LR 185

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD +++    +  AYL   +K  +   +   E       E F   GG+ ++ +   E   
Sbjct: 186 FDPSKIRARLREVAYLVAGLKLVFQDRQHGRE-------EVFLDKGGVASFAKALAEGED 238

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTR 340
           L+  + F  +          VE      +    EI +Y N I T +GGTH +  + A +R
Sbjct: 239 LLYEKPFLIRG---THGEVEVEVGFLHTQGYNAEILTYANMIPTRDGGTHLTAFKSAYSR 295

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            + +YA+      ++      DDL+     ++SV +  P+F GQTK KL++ +A   V  
Sbjct: 296 ALNQYAKKAGLNKEKGPQPTGDDLLEGLYAVVSVKLPNPQFEGQTKGKLLNPEAGTAVGQ 355

Query: 399 ALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
            + +     L +NP  A  +  + +         R+ +  V R+  +    LPGKLADC 
Sbjct: 356 VVYERLLEILEENPRIAKAVYEKALRAAQAREAARKARELVRRQNPLESDELPGKLADCQ 415

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                  ELFIVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  AG  K   N ++  +V
Sbjct: 416 TENPEEAELFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKAGLSKALKNAEVRAMV 475

Query: 518 QALGCRT----RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            A+G        + +  E LRY K+IIMTDADVDG+HI +LLLTFFY+ M  LIE+ H++
Sbjct: 476 SAIGVGIGGDGEAHFDLEGLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPLIERGHVY 535

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           +  PPL+R+  G K  Y + +E  Q  L+E +       E+ RFKGLGEM   QL ET M
Sbjct: 536 IAQPPLYRLQVGKKVEYLYSDEELQARLKELEG---KSYEVQRFKGLGEMNPEQLWETTM 592

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +  KR L RVE+   L    +  +   KLMG +   R +FI+E A + + + 
Sbjct: 593 NPEKRVLKRVELQDAL----EASELFEKLMGQEVAPRREFIEEHARYAE-LD 639


>gi|312867405|ref|ZP_07727614.1| DNA gyrase, B subunit [Streptococcus parasanguinis F0405]
 gi|311097106|gb|EFQ55341.1| DNA gyrase, B subunit [Streptococcus parasanguinis F0405]
          Length = 649

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 250/658 (37%), Positives = 379/658 (57%), Gaps = 24/658 (3%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +     ++ +  YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +A
Sbjct: 2   TEDKQQENQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+A+ IEV ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++S
Sbjct: 62  GFASHIEVFIEADNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVS 120

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG SVVNALS  L V V +  +I+ Q++ RG  +  L+   +  ++ GT + F P
Sbjct: 121 GGLHGVGSSVVNALSTSLDVRVYKNGSIYYQEYRRGHVVDDLKVIGET-DRTGTTVHFIP 179

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           DP+IF +   +D  +L K  Q  A+L+  ++   +  +E  E     +++ +++ GG+ +
Sbjct: 180 DPEIFTETTEYDFEKLNKRIQELAFLNRGLRISLTDKREGLE-----QEKHYHYEGGISS 234

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           Y++   EN+ +I  +      E       TVE A+ +       + S+ N I T EGGTH
Sbjct: 235 YVEYINENKDVIFEKPIYTDGEMDDI---TVEVAMQYTTGYHETVMSFANNIHTHEGGTH 291

Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           E G R ALTR I  YA+  +  +    ++  +D+      ++SV    P+F GQTKTKL 
Sbjct: 292 EQGFRTALTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLG 351

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKL 447
           + +  +       + F  +L++NP  A K++E  ++        +R +    +K+ +   
Sbjct: 352 NSEVVKITNRLFSEAFSDFLLENPQIAKKIVEKGILAAKARVAAKRAREVTRKKSGLEIS 411

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADCS N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI
Sbjct: 412 NLPGKLADCSSNNPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKI 471

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N++I  L  A+G    +++     RY+K++IMTDADVDGAHI +LLLT  Y+ M  ++
Sbjct: 472 LANEEIRSLFTAMGTGFGAEFDVTKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVL 531

Query: 568 EQKHLFLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGE 622
           E  ++++  PP++ +  G++   Y       E      LE +   G+ K  I R+KGLGE
Sbjct: 532 EAGYVYIAQPPIYGVKVGSEIKEYIQPGANQEAELAAALERYS-EGRSKPTIQRYKGLGE 590

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           M   QL ET M+   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 591 MDDHQLWETTMNPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAEY 644


>gi|271961616|ref|YP_003335812.1| DNA topoisomerase [Streptosporangium roseum DSM 43021]
 gi|270504791|gb|ACZ83069.1| DNA topoisomerase (ATP-hydrolyzing) [Streptosporangium roseum DSM
           43021]
          Length = 647

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 251/656 (38%), Positives = 368/656 (56%), Gaps = 24/656 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +YDASSI +LEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +AG+A+ IEV+L 
Sbjct: 2   SYDASSITVLEGLEAVRKRPGMYIGSTGERGLHHLVYEVVDNSVDEALAGHADRIEVTLL 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  + VVDNGRGIPV    +   +  +E++LT LHAGGKFD+ +Y +SGGLHGVG+SVV
Sbjct: 62  ADNGVRVVDNGRGIPVGIV-EAEGRPAVEVVLTVLHAGGKFDSKSYAVSGGLHGVGVSVV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS +L V +      + Q ++   PL PL K  +   + GT ITF  D  IF     +
Sbjct: 121 NALSSKLEVEIRTDGHHWQQSYAETRPLHPLVK-GEATEETGTSITFWADSTIFET-TTW 178

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L +  Q  A+L+  +      ++      G P++  +++ GGL  +++     +  
Sbjct: 179 NFETLSRRFQEMAFLNKGLTISLRDER-PDHINGEPKEATYHYEGGLSDFVKHLNSKKEP 237

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
               +   +   +G    +VE A+ W       + ++ NTI T EGGTHE G R ALT  
Sbjct: 238 AHVSVIDFEESGEGI---SVEIAMQWNNSYSESVYTFANTINTAEGGTHEEGFRAALTSI 294

Query: 342 IKKYAELTQNK---RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
           + +YA   +     +  ++  +D+      I+SV + +P+F GQTKTKL + +A+  V+ 
Sbjct: 295 VNRYAREQKFLKEGKDDNLAGEDIREGLTAIISVKLADPQFEGQTKTKLGNTEAKSFVQK 354

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLPGKLADC 456
           A  D    +  +NP EA  ++   ++ S  RL  R+ R++ R+ ++      LPGKLADC
Sbjct: 355 ACNDHLRDWFERNPGEAKDIINKSLQASRARLAARQARDLTRRKSLLESGSGLPGKLADC 414

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
             +     ELFIVEGDSAGGSAK  R+   QA+LP+RGKILNV  A  +K+  N ++  L
Sbjct: 415 QWSDPEKCELFIVEGDSAGGSAKGGRDSKFQAILPIRGKILNVEKARIDKVLRNTEVQAL 474

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A+G     ++    LRY K+I+M DADVDG HI +LLLT  ++ M  LIE  H++L  
Sbjct: 475 ITAMGTGVHDEFDITKLRYHKLILMADADVDGQHINTLLLTLLFRFMRPLIEAGHVYLSQ 534

Query: 577 PPLFRIT---QGTKSVYAHDEEHKQKILEEFKKHGKGKIE----ISRFKGLGEMLASQLK 629
           PPL++I    +G  + YA+ +  +  I+ +    GK        I RFKGLGEM ASQL 
Sbjct: 535 PPLYKIKWDRRGEDASYAYSDPERDAIIADGIARGKRDPRMHDGIQRFKGLGEMNASQLW 594

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           ET M+   R L  V ++          +  + LMG   + R  FI   A  +  + 
Sbjct: 595 ETTMNPETRVLRLVTLDD----AAQADELFSVLMGEDVEARRSFIIRNARDVRFLD 646


>gi|116333451|ref|YP_794978.1| DNA topoisomerase IV subunit B [Lactobacillus brevis ATCC 367]
 gi|116098798|gb|ABJ63947.1| DNA topoisomerase IV subunit B [Lactobacillus brevis ATCC 367]
          Length = 655

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 253/661 (38%), Positives = 363/661 (54%), Gaps = 32/661 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
            A   YD SSI++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DE +AGY   I 
Sbjct: 3   KAKPKYDDSSIQVLEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALAGYGKEIN 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +  +TVVD+GRG+PV  H       T E+ILT LHAGGKF    Y+ SGGLHGVG
Sbjct: 63  VTIHQDNSITVVDHGRGMPVGMH--ASGIPTPEVILTVLHAGGKFGQGGYKTSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
            SVVNALS  L VT+ R    + +KF   G P   L+K    R   GT I F+PD +IF 
Sbjct: 121 ASVVNALSSSLTVTIVRDGVRYQEKFAKGGHPQGTLKKLGNTRAHNGTTIDFKPDSQIFT 180

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               ++   L +  +  A+L   VK   + ++E  E+      EE++F  G+K ++    
Sbjct: 181 TTV-YNFGTLAERLRESAFLLKGVKITLTDEREGQERT-----EEYHFESGIKEFVSYLN 234

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRV 336
           E++  +          K G     VE A  + +   E   S+ N + T +GG+HE+G+R 
Sbjct: 235 EDKDTLGDI-MYFDGSKDGI---EVEVAAQYNDGYTENLLSFVNNVRTKDGGSHEAGMRS 290

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392
             T+   +YA       +R  ++   D+      ++S+ + E   +F GQTK KL + +A
Sbjct: 291 GWTKAFNEYARKVGLLKERDKNLEGTDVREGLSAVISLRVPEDLLQFEGQTKEKLGTPEA 350

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---L 449
           +  V++ + +   +YL++N      L++   +  + R   RK R+ +R     K     L
Sbjct: 351 RTIVDSIISEQLGYYLMENGDFGKMLIKKSTQARQAREAARKARDESRNGKRHKKHERLL 410

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
            GKL       A   ELF+VEGDSAGGSAKQ RNR  QA+LPLRGK+LN   A    I  
Sbjct: 411 SGKLTPAQSKNAAKNELFLVEGDSAGGSAKQGRNRKFQAILPLRGKVLNTEKAKLPDIMK 470

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N++I  ++  +G    +++  ED  Y+K+IIMTDAD DGAHI  LLLTFFY+ M  +I+ 
Sbjct: 471 NEEISTMIYTIGAGVGTEFNIEDANYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIDA 530

Query: 570 KHLFLISPPLFRITQ-GTK--SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
             +++  PPL+RI + G K    YA   +   +  ++   HG     + RFKGLGEM A 
Sbjct: 531 GRIYIALPPLYRIQKTGKKPTIEYAWTNDELNEKTKKIANHG---YHLQRFKGLGEMDAE 587

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF-IDDVG 685
           QL ET MD + RTL+RV+I+         +  +  LMG K + R K+I+    F ++D  
Sbjct: 588 QLWETTMDPDNRTLIRVQIDD----AALAERRVTTLMGDKVEPRRKWIESNVQFTLEDDD 643

Query: 686 T 686
           T
Sbjct: 644 T 644


>gi|242242634|ref|ZP_04797079.1| DNA topoisomerase [Staphylococcus epidermidis W23144]
 gi|242233770|gb|EES36082.1| DNA topoisomerase [Staphylococcus epidermidis W23144]
          Length = 664

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 237/654 (36%), Positives = 361/654 (55%), Gaps = 31/654 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  +NY   SI++LEGLE VR RPGMYIG TD++ LHHL  EV+DN++DEV+ GY + I 
Sbjct: 2   NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEVVDNSVDEVLNGYGDAIT 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+++ +G +++ DNGRG+P   H     K T E+I T LHAGGKF    Y+ SGGLHGVG
Sbjct: 62  VTINQDGSISIEDNGRGMPTGIH--ASGKPTAEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS+ L V + R   I++Q F  G   +    K     K GT++TF+PD +IF  
Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYTQNFKNGGIPATGLVKTGKTKKTGTKVTFKPDSEIFKS 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L +  Q  A+L   +K   +  +   E+      E +++  G+K ++    E
Sbjct: 180 TTTFNFDILSERLQESAFLLKDLKITLTDLRSGKERE-----EIYHYEEGIKEFVSYVNE 234

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            + ++  ++ T      G     V+ A  + ++    I S+ N + T +GGTHE G + A
Sbjct: 235 GKEVLH-DVTTFAGHSNGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 290

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
           +TR   +YA        +  ++  +D+      I+SV I E   +F GQTK+KL + +A+
Sbjct: 291 MTRVFNEYARRINELKDKDKNLDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTSEAR 350

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450
             V++ + +   +YL +    +  L++  I+  + R   RK RE  R     K     L 
Sbjct: 351 SAVDSVVSEKLPYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKSKRKDTLLS 410

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  E I  N
Sbjct: 411 GKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 470

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    + ++ ED  Y ++IIMTDAD DGAHI  LLLTFF++ M  L++  
Sbjct: 471 EEINTIIHTIGAGVGTDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 530

Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +F+  PPL+++ +G     K  YA  +E  + + ++  K       + R+KGLGEM   
Sbjct: 531 RVFIALPPLYKLEKGKGKNKKVEYAWTDEELENLQKQLGK----GFTLQRYKGLGEMNPE 586

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET M+   RTL+RV++  ++ S K     +  LMG K   R ++I++   F
Sbjct: 587 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVAPRREWIEKHVEF 636


>gi|16803326|ref|NP_464811.1| DNA topoisomerase IV subunit B [Listeria monocytogenes EGD-e]
 gi|47097246|ref|ZP_00234807.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes str. 1/2a
           F6854]
 gi|224501769|ref|ZP_03670076.1| DNA topoisomerase IV subunit B [Listeria monocytogenes FSL R2-561]
 gi|254828649|ref|ZP_05233336.1| parE [Listeria monocytogenes FSL N3-165]
 gi|254829957|ref|ZP_05234612.1| DNA topoisomerase IV subunit B [Listeria monocytogenes 10403S]
 gi|254898549|ref|ZP_05258473.1| DNA topoisomerase IV subunit B [Listeria monocytogenes J0161]
 gi|254911960|ref|ZP_05261972.1| DNA topoisomerase IV [Listeria monocytogenes J2818]
 gi|254936287|ref|ZP_05267984.1| parE [Listeria monocytogenes F6900]
 gi|284801671|ref|YP_003413536.1| DNA topoisomerase IV subunit B [Listeria monocytogenes 08-5578]
 gi|284994813|ref|YP_003416581.1| DNA topoisomerase IV subunit B [Listeria monocytogenes 08-5923]
 gi|21328242|gb|AAM48488.1|AF084044_1 DNA topoisomerase IV subunit B [Listeria monocytogenes]
 gi|16410702|emb|CAC99364.1| parE [Listeria monocytogenes EGD-e]
 gi|47014371|gb|EAL05343.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258601049|gb|EEW14374.1| parE [Listeria monocytogenes FSL N3-165]
 gi|258608877|gb|EEW21485.1| parE [Listeria monocytogenes F6900]
 gi|284057233|gb|ADB68174.1| DNA topoisomerase IV subunit B [Listeria monocytogenes 08-5578]
 gi|284060280|gb|ADB71219.1| DNA topoisomerase IV subunit B [Listeria monocytogenes 08-5923]
 gi|293589923|gb|EFF98257.1| DNA topoisomerase IV [Listeria monocytogenes J2818]
          Length = 655

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 240/652 (36%), Positives = 359/652 (55%), Gaps = 35/652 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + Y+  SI++LEGLE VR RP MYIG TD + LHHL  E++DN++DE +AG+   I V+L
Sbjct: 4   NEYNDDSIQVLEGLEAVRKRPAMYIGSTDVRGLHHLVYEIVDNSVDETLAGFGKKIVVTL 63

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGVGIS 160
             +G ++V D GRG+PV  H     KST+E+ILT LHAGGKF     Y+ SGGLHGVG S
Sbjct: 64  HEDGSVSVSDEGRGMPVGMHK--TGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGVGSS 121

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ L VT+ R    + QKF  G       KK       GT I F+PDP IF    
Sbjct: 122 VVNALSEWLVVTINRDGATYQQKFKDGGKPDGTLKKIGKSKATGTTIRFKPDPAIFPTT- 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F+   L +  +  A+L   +      ++       +   E F+F  G+K +++   E +
Sbjct: 181 SFNYETLSERLRESAFLLKGMLIELIDER-------VGMAEAFHFEEGVKNFVEYINEGK 233

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
            ++     + + E        VE A  + +     I S+ N + T   G+HESG++ A+T
Sbjct: 234 DVLHPVA-SFEGENATI---EVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMT 289

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395
           R    YA       ++  ++   D+      +LS+ + E   +F GQTK KL + +A++ 
Sbjct: 290 RIFNDYARRVNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQA 349

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGK 452
           V+  + +   ++L +NP  ++ L++  ++  E R   RK RE  R    +K     L GK
Sbjct: 350 VDAVVAEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGK 409

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L        +  EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I  N++
Sbjct: 410 LTPAQSRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEE 469

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++  +G    +++  ED  Y+KV+IMTDAD DGAHI  LLLTFFY+ M  L+E   +
Sbjct: 470 ISTIIHTVGAGVGTEFDVEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKV 529

Query: 573 FLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           F+  PPL+++++G   K V  YA  +E     +++  K       I R+KGLGEM A QL
Sbjct: 530 FIALPPLYKVSRGSGKKEVIEYAWTDEELDSAIQKIGK----GYMIQRYKGLGEMNADQL 585

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET M+ + RTL+RV ++         +  +  LMG K + R ++I++   F
Sbjct: 586 WETTMNPDTRTLIRVRVDD----SARAERRVATLMGDKVEPRRQWIEKHVEF 633


>gi|300088450|ref|YP_003758972.1| DNA gyrase subunit B [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528183|gb|ADJ26651.1| DNA gyrase, B subunit [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 641

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 251/654 (38%), Positives = 365/654 (55%), Gaps = 24/654 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
            +   + +Y A  I++L G E VR RPGMYIG TD + LHHL  EV+ N++DE +AG+ +
Sbjct: 7   TDNPGASSYTAEDIQVLGGREAVRKRPGMYIGSTDYRGLHHLVYEVVYNSVDESMAGFCD 66

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V + G+  ++V DNGRGIPV+   K    S LE ++T LHAG KF   TY++SGGLH
Sbjct: 67  KINVIIHGDESISVEDNGRGIPVDIQKK-TGVSALETVMTVLHAGAKFGGKTYQVSGGLH 125

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS+ + V V R   ++ Q++  GIP +P+    +      T  TF+ D KI
Sbjct: 126 GVGASVVNALSEWVTVDVRRDGKLYRQQYKEGIPEAPVAVVGEACGTG-TTTTFKFDSKI 184

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F D   +D   L +  +  AYL+  ++   +  +   E       + +YF GG+  +++ 
Sbjct: 185 FDDAT-YDFKTLAERMREIAYLNKGLEISITDRRTDKE-------QTYYFEGGITGFVRH 236

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              NR+ I         +        VE A+ + +       S+ N I T +GGTH +G 
Sbjct: 237 LNHNRNTIHRLPIAIYRKVDD---CMVEVALQYNDGFSETNFSFANCINTQDGGTHLTGF 293

Query: 335 RVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR I  Y    +  +        DD     V I+SV + EP+F GQTK KL + + 
Sbjct: 294 RSALTRVINDYVYKNKLVKDSDPSIMGDDCREGMVSIVSVKLPEPQFEGQTKGKLGNAEM 353

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
           +  VE+ + D    Y  ++P EA K+++ V+  +  R   RK R+ + +K ++    LPG
Sbjct: 354 KSMVESVVVDQLALYFEEHPDEAKKIIDKVLTSARARDAARKARDLIIKKNSLDGGSLPG 413

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLA+CS+      ELF+VEGDSAGGSAKQ RNR  QA+LPLRGKILNV  A  +K+ +++
Sbjct: 414 KLAECSEKEPSLCELFLVEGDSAGGSAKQGRNRRFQAILPLRGKILNVEKAAPDKMLSHE 473

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++ ALG      +    LRY +V++MTDADVDG+HI +LLLTFF++ M  LI    
Sbjct: 474 EIRAIITALGAGIDDDFDFGKLRYHRVVMMTDADVDGSHIRTLLLTFFFRHMSKLITNGG 533

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           L++  PPL+R+ QG    +   +  K + L+EFK      +++ R+KGLGEM A QL  T
Sbjct: 534 LYIAQPPLYRVKQGQNERWVFSDAEKDEALKEFKG---KSVDVQRYKGLGEMSAEQLWST 590

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            M+   RT+L VEI            + N LMG +   R  FIQ  A  + ++ 
Sbjct: 591 TMNPATRTMLTVEIED----AAHADATFNLLMGDQVPPRKAFIQAHAQQVKNLD 640


>gi|260437351|ref|ZP_05791167.1| DNA gyrase, B subunit [Butyrivibrio crossotus DSM 2876]
 gi|292810263|gb|EFF69468.1| DNA gyrase, B subunit [Butyrivibrio crossotus DSM 2876]
          Length = 641

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 246/658 (37%), Positives = 351/658 (53%), Gaps = 28/658 (4%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
               ++ YDASSI ILEGLE VR RPGMYIG    K L+HL  E+ DN++DE +AGY + 
Sbjct: 2   ATKVNNVYDASSISILEGLEAVRKRPGMYIGSVSTKGLNHLIYEIADNSVDEHLAGYCDT 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V+L+ +G  T+ DNGRGIP   HPK      +E++ T LHAGGKF +  Y+ISGGLHG
Sbjct: 62  IYVTLNNDGTATITDNGRGIPTGIHPKA-GIPAVEVVFTVLHAGGKFGDGGYKISGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKI 215
           VG SVVNALS+ L V + +   ++ Q++ RG  +  L +     +N  GT +TF PD  I
Sbjct: 121 VGASVVNALSEWLEVRIKQGGIVYEQRYERGKAVYKLRECGTCRKNDTGTSVTFLPDNTI 180

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     F A  +       AYL+  +   +   ++  EK        F+   G+  Y++ 
Sbjct: 181 FEK-TEFKAESIENRLHETAYLNPGLTIVFENARKGEEKKVT-----FHEEEGITAYVKA 234

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             EN+  +    +  K  + G     VE A  + +E   +I  +CN I T EGGTH +G 
Sbjct: 235 LNENKEAVHDVAYY-KGSRDGI---EVECAFQYVDEFQEQILGFCNNIYTAEGGTHLTGF 290

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           +   T  I KYA       ++ ++    D+      I++V   EP F GQTKTKL + DA
Sbjct: 291 KTQFTTVINKYARELGILKEKDVNFTGSDVRNGMTAIVAVKHPEPRFEGQTKTKLDNQDA 350

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
            + V +        +  +N      ++    + ++ R +  K +              GK
Sbjct: 351 GKVVADITAAELVRFFDRNLETLKSVIACAEKAAKIRKQEEKAKTNLLTKQKFSCDTNGK 410

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LA+C        E+FIVEGDSAGGSAK ARNR  QA+LP+RGKILNV  A  +K+  N +
Sbjct: 411 LANCESRNPEECEIFIVEGDSAGGSAKTARNRKTQAILPIRGKILNVEKASMDKVLANAE 470

Query: 513 IMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           I  ++ A GC       + +    LRY K+I MTDADVDGAHI +LLLTFFY+ M DLI 
Sbjct: 471 IKTMITAFGCGFSEGYGNDFDISKLRYNKIIFMTDADVDGAHIDTLLLTFFYRFMPDLIR 530

Query: 569 QKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           + H++L +PPL+++  +  +  Y +D++  +K  +E   H      + R+KGLGEM A Q
Sbjct: 531 EGHIYLATPPLYKVVPKKGQGRYLYDDKALEKYRKE---HEGSSFTLQRYKGLGEMDADQ 587

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           L ET ++   R L ++EI       K   D  + LMGT    R +FI   A   + + 
Sbjct: 588 LWETTLNPETRILKQIEIED----AKMASDITSMLMGTDVPPRREFIHTHAHDAE-LD 640


>gi|16800393|ref|NP_470661.1| DNA topoisomerase IV subunit B [Listeria innocua Clip11262]
 gi|16413798|emb|CAC96556.1| parE [Listeria innocua Clip11262]
          Length = 655

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 240/652 (36%), Positives = 360/652 (55%), Gaps = 35/652 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + Y+  SI++LEGLE VR RP MYIG TD + LHHL  E++DN++DE +AG+   I V+L
Sbjct: 4   NEYNDDSIQVLEGLEAVRKRPAMYIGSTDVRGLHHLVYEIVDNSVDETLAGFGKKIVVTL 63

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGVGIS 160
             +G ++V D GRG+PV  H     KST+E+ILT LHAGGKF     Y+ SGGLHGVG S
Sbjct: 64  HDDGSVSVSDEGRGMPVGMHK--TGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGVGSS 121

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ L VT+ R    + QKF  G       KK       GT I F+PDP IF    
Sbjct: 122 VVNALSEWLVVTINRDGATYQQKFKDGGKPDGTLKKIGKSKATGTTIRFKPDPAIFPTT- 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F+   L +  +  A+L   +      ++       +   E F+F  G+K +++   E +
Sbjct: 181 SFNYETLSERLRESAFLLKGMLIQLVDER-------VGMAESFHFEEGVKNFVEYINEGK 233

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
            ++   + + + E        VE A  + +     I S+ N + T   G+HESG++ A+T
Sbjct: 234 DVLHPVV-SFEGENATI---EVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMT 289

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395
           R    YA       ++  ++   D+      +LS+ + E   +F GQTK KL + +A++ 
Sbjct: 290 RIFNDYARRVNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQA 349

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGK 452
           V+  + +   ++L +NP  ++ L++  ++  E R   RK RE  R    +K     L GK
Sbjct: 350 VDAVVAEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGK 409

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L        +  EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I  N++
Sbjct: 410 LTPAQSRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEE 469

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++  +G    +++  ED  Y+KV+IMTDAD DGAHI  LLLTFFY+ M  L+E   +
Sbjct: 470 ISTIIHTVGAGVGTEFDVEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKV 529

Query: 573 FLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           F+  PPL+++++G   K V  YA  +E     +++  K       I R+KGLGEM A QL
Sbjct: 530 FIALPPLYKVSRGSGKKEVIEYAWTDEELDAAIQKIGK----GYMIQRYKGLGEMNADQL 585

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET M+ + RTL+RV ++         +  +  LMG K + R ++I++   F
Sbjct: 586 WETTMNPDTRTLIRVRVDD----SARAERRVATLMGDKVEPRRQWIEKHVEF 633


>gi|297564812|ref|YP_003683784.1| DNA gyrase subunit B [Meiothermus silvanus DSM 9946]
 gi|296849261|gb|ADH62276.1| DNA gyrase, B subunit [Meiothermus silvanus DSM 9946]
          Length = 645

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 265/661 (40%), Positives = 366/661 (55%), Gaps = 30/661 (4%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           +   +  YDAS+I++L+GLE VR RP MYIGGT     HHLF E++DN++DE +AGYA  
Sbjct: 2   STDLAAQYDASAIKVLKGLEGVRHRPAMYIGGTQADGYHHLFKEILDNSVDEALAGYATE 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I  +L  +G +TV DNGRGIPV+  P+   K  +EII T LHAGGKF+   Y++SGGLHG
Sbjct: 62  IITTLHPDGSITVEDNGRGIPVDIMPE-EGKPAVEIIYTVLHAGGKFEEGAYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNAL++   V V R    +  +FSRG    PL +    + KRGTR+TF PD  IF
Sbjct: 121 VGASVVNALAEYTRVEVFRDGKHYLIEFSRGEVTKPLTQIGTAKGKRGTRVTFLPDATIF 180

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                F+A+R+    +  ++L   ++  +  +    E       E F+  GG+ ++ +  
Sbjct: 181 DPGLKFEASRIRNRLREVSFLVAGLRLVFKDEVHQKE-------EVFFDKGGVASFAKFL 233

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLR 335
            E    +  +    + E       +VE  +   +       SY N I T +GGTH SG +
Sbjct: 234 AEGEEALYEKPVLLQGEVDVV---SVEVGLIHTKGYSNQLVSYANMIPTKDGGTHISGFK 290

Query: 336 VALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
            A TR I  YA+     K  +    DDL+     ++SV I +P+F GQTK KL++ +A  
Sbjct: 291 TAYTRAINAYAKKAGLVKGDLEPTGDDLLEGVSCVISVKIPQPQFEGQTKGKLLNPEAGT 350

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            V   + +    +L +NP  A  + E     ++ R   RK RE V RK A+    LPGKL
Sbjct: 351 AVSKVVYEKLTDWLEENPRAAKLIYEKAQRAAQAREAARKARELVRRKDALESDELPGKL 410

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC        ELFIVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  AG  K   N ++
Sbjct: 411 ADCQSEDPAEAELFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKAGLGKALKNAEV 470

Query: 514 MDLVQALGCRTRS-----QYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
             +V A+G    S      +  EDLRY K+IIMTDADVDG+HI +LLLTFFY+ M  ++E
Sbjct: 471 RAMVAAIGAGIDSNVEEAHFNLEDLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPILE 530

Query: 569 QKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
             +L++  PPL+R+  G     K  Y  ++E  ++ + +  +  +   E+ RFKGLGEM 
Sbjct: 531 GGYLYIAQPPLYRLQVGGGKNAKVQYLFNDEALKEAIAKLPE--RTSYEVQRFKGLGEMN 588

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
             QL ET MD  KR L +V +   L       +    LMG     R +FI+E A F   +
Sbjct: 589 PEQLWETTMDPAKRVLKQVTMEDALY----ANEIFEALMGQDVAPRREFIEENARFA-QL 643

Query: 685 G 685
            
Sbjct: 644 D 644


>gi|116627477|ref|YP_820096.1| DNA topoisomerase IV subunit B [Streptococcus thermophilus LMD-9]
 gi|116100754|gb|ABJ65900.1| DNA topoisomerase IV subunit B [Streptococcus thermophilus LMD-9]
 gi|312277994|gb|ADQ62651.1| DNA topoisomerase IV subunit B [Streptococcus thermophilus ND03]
          Length = 649

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 233/652 (35%), Positives = 369/652 (56%), Gaps = 32/652 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ ++I V+L
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGDVIAVTL 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G ++V D+GRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSVSVSDSGRGMPTGMH--AMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R  +++ Q+F  G  P++ LEK  K  ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGSVYRQRFENGGHPVTGLEKIGKAPKSKTGTKVTFMPDASIFSTT 186

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   V    +  +   E      +EEF++  G++ ++    E+
Sbjct: 187 -DFKFNTISERLKESAFLLKNVTMTLTDLRGEEE-----VREEFHYENGVQDFVSYLNED 240

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
           +  ++  I+    ++       +++   + +    I S+ N + T +GGTHE+G + A+T
Sbjct: 241 KETLTPVIYIDGDQQDFHLELALQYNDGYSDN---ILSFVNNVRTKDGGTHETGFKSAIT 297

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQRT 395
           +    YA  T    ++  ++   D       ++S+ +     +F GQTK KL S  A+  
Sbjct: 298 KAFNDYARKTGLLKEKDKNLEGSDYREGLSAVISLLVPEEHLQFEGQTKDKLGSPLARPI 357

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGK 452
           V+  + +   ++L++N   A+ L+   I+  + R   RK R+ +R     K       GK
Sbjct: 358 VDGIVSEYLTYFLMENGDLASNLVRKAIKARDAREAARKARDASRNGKKNKKDKGLLSGK 417

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L       A   EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N++
Sbjct: 418 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++  +G    + +  +D+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H+
Sbjct: 478 INTMIYTIGAGVGADFNLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHV 537

Query: 573 FLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           ++  PPL+++++G        YA  +   +++ ++F +       + R+KGLGEM A QL
Sbjct: 538 YIALPPLYKMSKGKGKKEVVEYAWTDGELEELRQKFGRGAL----LQRYKGLGEMNADQL 593

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET M+   RTL+RV I+     L   +  ++ LMG KA  R ++I++   F
Sbjct: 594 WETTMNPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 641


>gi|302531361|ref|ZP_07283703.1| DNA gyrase, B subunit [Streptomyces sp. AA4]
 gi|302440256|gb|EFL12072.1| DNA gyrase, B subunit [Streptomyces sp. AA4]
          Length = 655

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 252/664 (37%), Positives = 372/664 (56%), Gaps = 27/664 (4%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
                 Y+ASSI +LEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +AGYA  +
Sbjct: 2   TENKSEYNASSITVLEGLEAVRKRPGMYIGSTGERGLHHLVQEVVDNSVDEAMAGYATKV 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           EV+L  +G + VVD+GRGIPV+ HPK   K TLE++LT LHAGGKFD+ +Y +SGGLHGV
Sbjct: 62  EVTLLADGGVRVVDDGRGIPVDIHPK-EKKPTLEVVLTILHAGGKFDSDSYAVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS +L   +      + Q++   +P  PLE      +  GT ITF  D  IF 
Sbjct: 121 GVSVVNALSTKLLAEIKVGGRSWRQEYLNQVP-GPLEDLGPATD-TGTTITFWADGDIFE 178

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP--------EKEEFYFPGGL 269
               ++   + +  Q  A+L+  +      ++   E+            ++  + +PGGL
Sbjct: 179 T-TTYNFETISRRLQEMAFLNKGLTLSLRDERVADEETEEDAAGKQARVKEVVYCYPGGL 237

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           + +++    ++  I   + +   +  G     VE A+ W     P + ++ NTI T EGG
Sbjct: 238 EDFVKHINGSKDPIHESVISFDAKGSG---LEVEVAMQWNTGFTPSVYTFANTINTHEGG 294

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           THE G R ALTR +  YA   +   ++  ++  DD+      I+S+ + EP+F GQTKTK
Sbjct: 295 THEEGFRAALTRVVNAYAREKKLLKEKDANLTGDDVREGLAAIVSIKLAEPQFEGQTKTK 354

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           L + +A+  V+    +    +  +NP EA  ++   I  ++ RL  RK R+ V RK A+ 
Sbjct: 355 LGNSEAKTFVQQQSNEWLGDWFERNPSEAKTIINKSISSAQARLAARKARDLVRRKGALE 414

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKL DC  N     EL+IVEGDSAGGSAK+ R+   QA+LP+RGKI+NV  A  +
Sbjct: 415 IGGLPGKLKDCRSNDPGECELYIVEGDSAGGSAKEGRDSMYQAILPIRGKIINVEKARID 474

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           ++  N ++  L+ ALG      +    LRY K+++M DADVDG HI +LLLT  ++ M  
Sbjct: 475 RVLKNTEVQSLITALGTGIHDDFDISKLRYHKIVLMADADVDGQHITTLLLTLLFRFMTP 534

Query: 566 LIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLG 621
           LIE  H+FL  PPL++I     +  YA+ ++ +  +++   + G+   +   I R+KGLG
Sbjct: 535 LIEHGHVFLSRPPLYKIKWPRSEPEYAYSDKERDAVIQAGVEAGRRLPKDDAIQRYKGLG 594

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           EM A +L ET MD   R L +V ++          +  + LMG   + R  FI   A  +
Sbjct: 595 EMNAEELWETTMDPANRLLGQVTLDD----AAQADELFSVLMGEDVEARRSFITRNAKDV 650

Query: 682 DDVG 685
             + 
Sbjct: 651 RFLD 654


>gi|222153162|ref|YP_002562339.1| DNA topoisomerase IV subunit B [Streptococcus uberis 0140J]
 gi|222113975|emb|CAR42259.1| topoisomerase IV subunit B [Streptococcus uberis 0140J]
          Length = 650

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 240/652 (36%), Positives = 369/652 (56%), Gaps = 34/652 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ N I+V+++
Sbjct: 10  NYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGNEIKVTIN 69

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G ++V D+GRG+P   H       T+++I T LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 70  KDGSVSVADSGRGMPTGKH--AMGIPTVQVIFTVLHAGGKFGQGGYKTSGGLHGVGSSVV 127

Query: 163 NALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEK-VRNKRGTRITFRPDPKIFGDKA 220
           NALS  L V + R  +++ Q+F   G P++ L+K     ++K GT +TF PD  IF    
Sbjct: 128 NALSKWLEVEITRDGSVYKQRFEDGGKPVTTLKKIGTAAKSKTGTTVTFMPDDSIFST-T 186

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    + +  +  A+L   V+   +  +        P+ EEF++  G++ +++   E++
Sbjct: 187 DFKFNTIAERLKESAFLLKDVRMSLTDLR-----GEEPQVEEFHYENGVQDFVEYLNEDK 241

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             ++      + E        V+ A+ + +   +   S+ N + T +GG+HE+GL+ A+T
Sbjct: 242 ETLTPV-IYIEGED---QDFQVQVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAIT 297

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395
           + +  YA  T    ++  ++   D       +LS+ + E   +F GQTK KL S  A+  
Sbjct: 298 KVMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPV 357

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPGK 452
           V+  + +    +L++N   AT L+   I+  + R   RK R+ +R   K    K  L GK
Sbjct: 358 VDGIVSEKLTFFLLENGELATNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 417

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L       A   EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N++
Sbjct: 418 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  +V  +G    + +  +D+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E+ H+
Sbjct: 478 INTMVHTIGAGVGADFAIDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGHV 537

Query: 573 FLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           ++  PPL+++ +G     K  YA  +     + +EF K       + R+KGLGEM A QL
Sbjct: 538 YIALPPLYKMAKGKGKTEKVAYAWTDGELDDLRKEFGKGAM----LQRYKGLGEMNADQL 593

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET MD   RTL+RV I+     L   +  ++ LMG KA  R ++I++   F
Sbjct: 594 WETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 641


>gi|42518089|ref|NP_964019.1| DNA gyrase subunit B [Lactobacillus johnsonii NCC 533]
 gi|41582373|gb|AAS07985.1| DNA gyrase subunit B [Lactobacillus johnsonii NCC 533]
          Length = 655

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 248/669 (37%), Positives = 373/669 (55%), Gaps = 20/669 (2%)

Query: 23  LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82
            +   +   + A   +  +D Y+AS I++L GLE VR RPGMYIG T  + LHHL  E+I
Sbjct: 2   AEDKSKAALNKAKDFEKRADTYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEII 61

Query: 83  DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142
           DN++DE +AG+A  IE++++ +G +TV D+GRGIPV+   K   +  LE + T LHAGGK
Sbjct: 62  DNSIDERLAGFATKIEITVNEDGSVTVQDDGRGIPVDIQAK-TGRPALETVFTVLHAGGK 120

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-N 201
           F    Y++SGGLHGVG SVVNALS +L VTV R    ++  F  G  +  +++   V   
Sbjct: 121 FGGGGYKVSGGLHGVGASVVNALSTKLEVTVMRDGKKYAISFDHGRVVGEMKQVGTVPLE 180

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           + GT + F PDP IF +   FD   L    +  A+L+  +K  ++  ++ +      E +
Sbjct: 181 EHGTIVRFYPDPDIFTETTTFDDKILKNRIRELAFLNKGLKLTFTDKRKES-----AETD 235

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            ++F GG+K Y+    + + ++  E    +   +G     VE A+ +       + ++ N
Sbjct: 236 VYHFEGGIKEYVAFLNKGQEVLFDEPIYVEGNYEGI---DVEVALQYTNGYKTTLMTFAN 292

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I T EGG HE+G + ALTR +  YA   +    +  ++  +D+      I+SV    P+
Sbjct: 293 NIHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGITAIVSVKHPNPQ 352

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQRE 437
           F GQTKTKL + DA+  V+ A  + F  +L++NP    K++E   +        +R +  
Sbjct: 353 FEGQTKTKLGNSDARTAVDRAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREV 412

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
             +K+ +    LPGKLAD + N    +ELFIVEG+SAGGSAKQ R+R  QA+LP+RGKIL
Sbjct: 413 TRKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKIL 472

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557
           NV  A  ++I  NQ+I  L  ALG    + +     RY K+IIMTDADVDGAHI +LLLT
Sbjct: 473 NVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIRTLLLT 532

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
            FY  M  +IE+ ++++  PPL+++ QG    Y   +E     L   +     K  + R+
Sbjct: 533 LFYNYMRPMIEKGYVYIARPPLYQVRQGKVEKYLDTDEELHDYLGTLQPS--PKPIVQRY 590

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           KGLGEM   QL ET M+   R L RV         +D     + LMG +   R +FI++ 
Sbjct: 591 KGLGEMDPEQLWETTMNPENRRLDRVSPEY----AEDADKIFDLLMGNEVGPRREFIEKN 646

Query: 678 ASFIDDVGT 686
           A +++++  
Sbjct: 647 AKYVENLDA 655


>gi|227889153|ref|ZP_04006958.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC
           33200]
 gi|268318566|ref|YP_003292222.1| DNA gyrase, subunit B [Lactobacillus johnsonii FI9785]
 gi|227850382|gb|EEJ60468.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC
           33200]
 gi|262396941|emb|CAX65955.1| DNA gyrase, subunit B [Lactobacillus johnsonii FI9785]
          Length = 655

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 247/669 (36%), Positives = 373/669 (55%), Gaps = 20/669 (2%)

Query: 23  LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82
            +   +   + A   +  +D Y+AS I++L GLE VR RPGMYIG T  + LHHL  E+I
Sbjct: 2   AEDKSKAALNKAKDFEKRADTYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEII 61

Query: 83  DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142
           DN++DE +AG+A  IE++++ +G +TV D+GRGIPV+   K   +  LE + T LHAGGK
Sbjct: 62  DNSIDERLAGFATKIEITVNEDGSVTVQDDGRGIPVDIQAK-TGRPALETVFTVLHAGGK 120

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-N 201
           F    Y++SGGLHGVG SVVNALS +L VTV R    ++  F  G  +  +++   V   
Sbjct: 121 FGGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDGKKYAISFDHGRVVGEMKQVGTVPLE 180

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           + GT + F PDP IF +   FD   L    +  A+L+  +K  ++  ++ +      E +
Sbjct: 181 EHGTIVHFYPDPDIFTETTTFDDKILKNRIRELAFLNKGLKLTFTDKRKES-----AETD 235

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            ++F GG+K Y+    + + ++  E    +   +G     VE A+ +       + ++ N
Sbjct: 236 VYHFEGGIKEYVAFLNKGQEVLFDEPIYVEGNYEGI---DVEVALQYTNGYKTTLMTFAN 292

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I T EGG HE+G + ALTR +  YA   +    +  ++  +D+      ++SV    P+
Sbjct: 293 NIHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGITAVVSVKHPNPQ 352

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQRE 437
           F GQTKTKL + DA+  V+ A  + F  +L++NP    K++E   +        +R +  
Sbjct: 353 FEGQTKTKLGNSDARTAVDRAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREV 412

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
             +K+ +    LPGKLAD + N    +ELFIVEG+SAGGSAKQ R+R  QA+LP+RGKIL
Sbjct: 413 TRKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKIL 472

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557
           NV  A  ++I  NQ+I  L  ALG    + +     RY K+IIMTDADVDGAHI +LLLT
Sbjct: 473 NVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIRTLLLT 532

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
            FY  M  +IE+ ++++  PPL+++ QG    Y   +E     L   +     K  + R+
Sbjct: 533 LFYNYMRPMIEKGYVYIARPPLYQVRQGKVEKYLDTDEELHDYLGTLQPS--PKPVVQRY 590

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           KGLGEM   QL ET M+   R L RV         +D     + LMG +   R +FI++ 
Sbjct: 591 KGLGEMDPEQLWETTMNPENRRLDRVSPEY----AEDADKIFDLLMGNEVGPRREFIEKN 646

Query: 678 ASFIDDVGT 686
           A +++++  
Sbjct: 647 AKYVENLDA 655


>gi|116872719|ref|YP_849500.1| DNA topoisomerase IV subunit B [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741597|emb|CAK20721.1| DNA topoisomerase IV, B subunit [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 655

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 240/652 (36%), Positives = 359/652 (55%), Gaps = 35/652 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + Y+  SI++LEGLE VR RP MYIG TD + LHHL  E++DN++DE +AG+   I V+L
Sbjct: 4   NEYNDDSIQVLEGLEAVRKRPAMYIGSTDVRGLHHLVYEIVDNSVDETLAGFGKKIVVTL 63

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGVGIS 160
             +G ++V D GRG+PV  H     KST+E+ILT LHAGGKF     Y+ SGGLHGVG S
Sbjct: 64  HDDGSVSVSDEGRGMPVGMHK--TGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGVGSS 121

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ L VT+ R    + QKF  G       KK       GT I F+PDP IF    
Sbjct: 122 VVNALSEWLVVTINRDGATYQQKFKDGGKPDGTLKKIGKSKATGTTIRFKPDPTIFPTT- 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F+   L +  +  A+L   +      ++       +   E F+F  G+K +++   E +
Sbjct: 181 SFNYETLSERLRESAFLLKGMLIQLVDER-------VGMAESFHFEEGVKNFVEYINEGK 233

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
            ++     + + E        VE A  + +     I S+ N + T   G+HESG++ A+T
Sbjct: 234 DVLHPVA-SFEGENATI---EVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMT 289

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395
           R    YA       ++  ++   D+      +LS+ + E   +F GQTK KL + +A++ 
Sbjct: 290 RIFNDYARRVNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQA 349

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGK 452
           V+  + +   ++L +NP  ++ L++  ++  E R   RK RE  R    +K     L GK
Sbjct: 350 VDAVVAEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGK 409

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L        +  EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I  N++
Sbjct: 410 LTPAQSRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEE 469

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++  +G    +++  ED  Y+KV+IMTDAD DGAHI  LLLTFFY+ M  L+E   +
Sbjct: 470 ISTIIHTVGAGVGTEFDVEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKV 529

Query: 573 FLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           F+  PPL+++++G   K V  YA  +E     +++  K       I R+KGLGEM A QL
Sbjct: 530 FIALPPLYKVSRGSGKKEVIEYAWTDEELDSAIQKIGK----GYMIQRYKGLGEMNADQL 585

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET M+ + RTL+RV ++         +  +  LMG K + R ++I++   F
Sbjct: 586 WETTMNPDTRTLIRVRVDD----SARAERRVATLMGDKVEPRRQWIEKHVEF 633


>gi|319401357|gb|EFV89568.1| DNA topoisomerase IV, B subunit [Staphylococcus epidermidis FRI909]
          Length = 666

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 237/654 (36%), Positives = 361/654 (55%), Gaps = 31/654 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  +NY   SI++LEGLE VR RPGMYIG TD++ LHHL  EV+DN++DEV+ GY + I 
Sbjct: 4   NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEVVDNSVDEVLNGYGDAIT 63

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+++ +G +++ DNGRG+P   H     K T E+I T LHAGGKF    Y+ SGGLHGVG
Sbjct: 64  VTINQDGSISIEDNGRGMPTGIH--ASGKPTAEVIFTVLHAGGKFGQGGYKTSGGLHGVG 121

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS+ L V + R   I++Q F  G   +    K     K GT++TF+PD +IF  
Sbjct: 122 ASVVNALSEWLEVEIHRDGNIYTQNFKNGGIPATGLVKTGKTKKTGTKVTFKPDSEIFKS 181

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L +  Q  A+L   +K   +  +   E+      E +++  G+K ++    E
Sbjct: 182 TTTFNFDILSERLQESAFLLKDLKITLTDLRSGKERE-----EIYHYEEGIKEFVSYVNE 236

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            + ++  ++ T      G     V+ A  + ++    I S+ N + T +GGTHE G + A
Sbjct: 237 GKEVLH-DVTTFAGHSNGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 292

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
           +TR   +YA        +  ++  +D+      I+SV I E   +F GQTK+KL + +A+
Sbjct: 293 MTRVFNEYARRINELKDKDKNLDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTSEAR 352

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450
             V++ + +   +YL +    +  L++  I+  + R   RK RE  R     K     L 
Sbjct: 353 SAVDSVVSEKLPYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKSKRKDTLLS 412

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  E I  N
Sbjct: 413 GKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 472

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    + ++ ED  Y ++IIMTDAD DGAHI  LLLTFF++ M  L++  
Sbjct: 473 EEINTIIHTIGAGVGTDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 532

Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +F+  PPL+++ +G     K  YA  +E  + + ++  K       + R+KGLGEM   
Sbjct: 533 RVFIALPPLYKLEKGKGKNKKVEYAWTDEELENLQKQLGK----GFTLQRYKGLGEMNPE 588

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET M+   RTL+RV++  ++ S K     +  LMG K   R ++I++   F
Sbjct: 589 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVAPRREWIEKHVEF 638


>gi|229829522|ref|ZP_04455591.1| hypothetical protein GCWU000342_01614 [Shuttleworthia satelles DSM
           14600]
 gi|229791953|gb|EEP28067.1| hypothetical protein GCWU000342_01614 [Shuttleworthia satelles DSM
           14600]
          Length = 642

 Score =  592 bits (1525), Expect = e-167,   Method: Composition-based stats.
 Identities = 251/655 (38%), Positives = 371/655 (56%), Gaps = 19/655 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              + A   Y A  I+ILEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AGY 
Sbjct: 1   MEEEMAQQEYGADQIQILEGLEAVRKRPGMYIGSTSAQGLHHLVYEIVDNSVDEALAGYC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I V+++    +TVVD+GRGIP   + K      +E++ T LHAGGKF    Y++SGGL
Sbjct: 61  HHIRVTINRGNSVTVVDDGRGIPTGINHKA-GIPAVEVVFTILHAGGKFGGGGYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213
           HGVG SVVNALS  L V + R   I+ Q++ RG  +  L+       ++ GT++TF PD 
Sbjct: 120 HGVGASVVNALSLWLEVEIRRDGKIWRQRYERGKTMGSLKVVGSCDPSETGTKVTFLPDD 179

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IF     FD   L +  +  A+L+  ++          E+     ++ FY+ GG+K ++
Sbjct: 180 RIFETT-EFDYGVLRRRLRETAFLTKGLRISLR-----DEREEEVREDSFYYEGGIKEFV 233

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
                    +  ++   +    G +   VE A+   +       S+ N I+T EGGT  +
Sbjct: 234 SYLNRGDKPLYRDVIYCEGTSNGVY---VEVAMQHNDAYKEACYSFVNNIITPEGGTQVT 290

Query: 333 GLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           G + A+T     YA   +  K    + SDD+      ++S+ I +P+F GQTK KL + +
Sbjct: 291 GFKAAVTNVFNSYAHENKLIKDTEKLDSDDIREGLTSVISIKIEDPQFEGQTKQKLGNSE 350

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLP 450
           A+  V+  + +   ++L QNP  A  ++E   + +      R+ +    RK+ +    LP
Sbjct: 351 ARGAVQAVVTEQLTYFLEQNPQAARLIVEKSQLAQRAREAARKARDLTRRKSPLDGAALP 410

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS       E+FIVEGDSAGGSAK+ARNR  QA+LPLRGKILNV  A  ++I  N
Sbjct: 411 GKLADCSSKDPAECEIFIVEGDSAGGSAKEARNRRTQAILPLRGKILNVEKAREDRIYGN 470

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
            +I  ++ A G     ++  E LRY K+IIMTDADVDGAHIA+L+LTF Y+ M +LI Q 
Sbjct: 471 AEIKAMITAFGTGIHDEFDIEKLRYHKIIIMTDADVDGAHIATLMLTFLYRFMPELIRQG 530

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           +++L +PPL++I +  K  YA+ +E +  IL    +     I+I R+KGLGEM A QL E
Sbjct: 531 NVYLATPPLYKIEKNRKEWYAYSDEEQNNILNRIGRDN--SIKIQRYKGLGEMDAQQLWE 588

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T MD + R L RV++  D     +   + + LMG + + R +FI+E A +   + 
Sbjct: 589 TTMDPDTRILKRVQVIDD--DEAEINLTFSTLMGEEVEPRREFIEENAKYAT-LD 640


>gi|237784642|ref|YP_002905347.1| DNA gyrase subunit B [Corynebacterium kroppenstedtii DSM 44385]
 gi|237757554|gb|ACR16804.1| DNA gyrase subunit B [Corynebacterium kroppenstedtii DSM 44385]
          Length = 682

 Score =  592 bits (1525), Expect = e-167,   Method: Composition-based stats.
 Identities = 252/692 (36%), Positives = 372/692 (53%), Gaps = 50/692 (7%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +   A  +   +YDASSI ILEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +A
Sbjct: 2   AENAAENNTRHDYDASSITILEGLEAVRKRPGMYIGSTGERGLHHLVWEVVDNSVDEAMA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           GYA  ++V++  +G + VVD+GRGIPV  HP      T+++++T LHAGGKFDN +Y +S
Sbjct: 62  GYATHVDVTIMKDGGIEVVDDGRGIPVSMHP--SGAPTVQVVMTQLHAGGKFDNDSYAVS 119

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVGISVVNALS  +   + R    + Q F+  IP      + K     GT I F P
Sbjct: 120 GGLHGVGISVVNALSTRVEAEIKRDGYRWYQNFTDAIPDEL--VQGKKARGTGTTIRFWP 177

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------------- 258
           DP +F     F    + +  Q  A+L+  +    +  +  A +                 
Sbjct: 178 DPDVFET-TEFKFETIARRLQEMAFLNKGLYITLTDKRSQATETPEDADDTVEEAAAAKS 236

Query: 259 -----------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
                              E F++P GLK Y+ +  + ++ I   I T   +        
Sbjct: 237 AEEAAADAEQKAKKSKERTETFHYPDGLKDYVASINKTKTAIHPTIITFDAKGD---EHE 293

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISII 358
           VE A+ W       + ++ NTI T EGGTHE G R ALT  + +YA   +    +  ++ 
Sbjct: 294 VEVALQWNSGYAQSVHTFANTINTIEGGTHEEGFRAALTSLMNRYAREHKLLKDKEPNLS 353

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD       ++SV + +P+F GQTKTKL + + +  V+  + +   H+   NP EA  +
Sbjct: 354 GDDCREGLAAVISVRVADPQFEGQTKTKLGNTEVKSFVQKQVFENVSHWFESNPAEAKII 413

Query: 419 LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           +   +  S+ R+  RK R+ V RK+A     LPGKLADC       +EL+IVEGDSAGGS
Sbjct: 414 VNKAVSSSQARVAARKARDLVRRKSATDLGGLPGKLADCRSKDPTLSELYIVEGDSAGGS 473

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  R+   QA+LPLRGKILNV  A  +++  N ++  ++ ALG     ++  + LRY K
Sbjct: 474 AKSGRDSMYQAILPLRGKILNVEKARLDRVLKNNEVQAIITALGTGIHDEFDIKKLRYHK 533

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEH 596
           +I+M DADVDG+HIA+LLLT  ++ M  L+E+ H++L  PPL+++  G  +  +A+ +  
Sbjct: 534 IILMADADVDGSHIATLLLTLLFRFMRPLVEEGHVYLAQPPLYKLKWGKGAPGFAYSDVE 593

Query: 597 KQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
           + ++L E  + G+   +   I R+KGLGEM   +L ET MD + R L +V++        
Sbjct: 594 RDELLAEGLEQGRKINKDDGIQRYKGLGEMNPKELWETTMDPSIRILRQVQLED----AA 649

Query: 654 DTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              +  + LMG     R  FI   A  +  + 
Sbjct: 650 KADEIFSVLMGDDVIARRSFITRNAKDVRFLD 681


>gi|323339872|ref|ZP_08080141.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus ruminis
           ATCC 25644]
 gi|323092745|gb|EFZ35348.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus ruminis
           ATCC 25644]
          Length = 678

 Score =  592 bits (1525), Expect = e-167,   Method: Composition-based stats.
 Identities = 242/654 (37%), Positives = 363/654 (55%), Gaps = 35/654 (5%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
            ++NY   SI++L+GLE VR RPGMYIG TD K LHHL  E++DNA+DE ++G+   I+V
Sbjct: 2   GTENYSDDSIQVLKGLEAVRKRPGMYIGSTDAKGLHHLVYEIVDNAVDEALSGFGKEIDV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  +TVVDNGRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHGVG 
Sbjct: 62  TIHKDDSITVVDNGRGLPVGIH--AMGIPTVEVIYTVLHAGGKFGQGGYKTSGGLHGVGA 119

Query: 160 SVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           SVVNALS++L V   R    + + F   G P+  L K  K + + GT +TF+PD KIF  
Sbjct: 120 SVVNALSEKLTVNTVRDGIEYEEDFVDGGHPVGTLRKIGKTKKQSGTTVTFKPDKKIFST 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L +  +  A+L   VK   + ++         +++ F F  G++ ++    E
Sbjct: 180 TH-FNYDTLAERLRESAFLLKGVKIVLTDER-------NDDQDVFLFENGIQEFVSYLNE 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            +  + + +   + +K G     VE A  + +     I S+ N + T +GGTHE G++ A
Sbjct: 232 EKDTLGNVM-YFEGKKDGI---EVEVAAQYNDGYSETIMSFVNNVRTKDGGTHEVGMKSA 287

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
            T+   +YA        +  ++   D+      ++SV I E   +F GQTK KL + +A+
Sbjct: 288 WTKAFNEYARKVDLIKSKDKNLEGSDVREGLACVVSVRIPEELLQFEGQTKGKLGTPEAR 347

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LP 450
             V+  + +   +YL++N   A +L+   ++  E R   RK R+ +R    R  +   L 
Sbjct: 348 TAVDGIVNEQLGYYLMENGDFAKELVRKSLKAREAREAARKARDESRNGKKRHKKERLLS 407

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL       A   ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + I  N
Sbjct: 408 GKLTPAQSKNAKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLQDIVKN 467

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    +++  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  +I   
Sbjct: 468 EEINTMIYTIGAGVGTEFNIEDANYDKIIIMTDADTDGAHIQTLLLTFFYKYMRPMINAG 527

Query: 571 HLFLISPPLFRITQGTKSV----YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +++  PPL+++ +  K      YA  +   +   +E  K       + RFKGLGEM A 
Sbjct: 528 RVYIALPPLYKLQKTVKKKTVVKYAWTDAELKTSEKEIGK----GFTLQRFKGLGEMNAD 583

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET M+   RTL+RV+I  D       +  ++ LMG + + R K+I++   F
Sbjct: 584 QLWETTMNPETRTLVRVKIEDD----ALAEKRVSTLMGDRVEPRRKWIEKNVKF 633


>gi|73662713|ref|YP_301494.1| DNA topoisomerase IV subunit B [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72495228|dbj|BAE18549.1| topoisomerase IV subunit B [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 666

 Score =  592 bits (1525), Expect = e-167,   Method: Composition-based stats.
 Identities = 240/654 (36%), Positives = 366/654 (55%), Gaps = 31/654 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  +NY   SI++LEGLE VR RPGMYIG TD++ LHHL  EV+DN++DEV+ G+ + I+
Sbjct: 4   NKKNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEVVDNSVDEVLNGFGSEIQ 63

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+++ +  +T+ DNGRG+P   H     K T+++I T LHAGGKF    Y+ SGGLHGVG
Sbjct: 64  VTINKDESITIEDNGRGMPTGIH--TSGKPTVQVIFTILHAGGKFGQGGYKTSGGLHGVG 121

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS+ L V + R   I++Q F++G   +    K     K GT++TF+PDP+IF  
Sbjct: 122 ASVVNALSEWLEVEIYRDGNIYTQSFAQGGKPTTGLVKHGKTKKTGTKVTFKPDPEIFKS 181

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L +  Q  A+L  R+K      +   E+      + F++  G+K ++    E
Sbjct: 182 ATSFNYDVLSERLQESAFLLKRLKITLKDLRAGKERE-----DVFHYEDGIKEFVAYVNE 236

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVA 337
            + ++         E        VE A  + ++  E I S+ N + T +GGTHE G + A
Sbjct: 237 GKEVLHDVAD-FSGEANNI---EVEVAFQYNDQYSEGILSFVNNVRTKDGGTHEVGFKSA 292

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
           +TR    YA       ++  ++  +D+      I+S+ I E   +F GQTK+KL + +A+
Sbjct: 293 MTRVFNDYARRINELKEKDKNLDGNDIREGLTAIISIRIPEELLQFEGQTKSKLGTPEAR 352

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450
             V++ + D   +YL +    +  L++  ++  + R   RK RE  R     K     L 
Sbjct: 353 SAVDSVVADKLPYYLEEKGQLSKSLVKKALKAQQAREAARKAREDARSGKKNKRKDTLLS 412

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  + I  N
Sbjct: 413 GKLTPAQSKNTEKKELYLVEGDSAGGSAKLGRDRKYQAILPLRGKVINTEKARLDDIFKN 472

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    ++++ ED  Y ++IIMTDAD DGAHI  LLLTFF++ M  L+E  
Sbjct: 473 EEINTIIHTIGAGVGNEFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVEAG 532

Query: 571 HLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +F+  PPL+++ +G     K  YA  +E  +K+ ++  K       + R+KGLGEM A 
Sbjct: 533 RVFIALPPLYKLEKGKGASRKIEYAWTDEELEKLQKKLGK----GFSLQRYKGLGEMNAD 588

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET M+ + RTL+RV++  +L S K     +  LMG K   R ++I+    F
Sbjct: 589 QLWETTMNPDTRTLIRVQVEDELRSSKR----VTTLMGDKVAPRREWIENHVEF 638


>gi|194467941|ref|ZP_03073927.1| DNA topoisomerase IV, B subunit [Lactobacillus reuteri 100-23]
 gi|194452794|gb|EDX41692.1| DNA topoisomerase IV, B subunit [Lactobacillus reuteri 100-23]
          Length = 669

 Score =  592 bits (1525), Expect = e-167,   Method: Composition-based stats.
 Identities = 243/651 (37%), Positives = 363/651 (55%), Gaps = 34/651 (5%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YDASSI++L+GLE VR RPGMYIG TD + LHHL  E++DNA+DE ++GY + I V+++ 
Sbjct: 8   YDASSIQVLKGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGDEINVTIEA 67

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGVGISVV 162
           +  +TV D+GRG+PV  H     K T E+I+T LHAGGKF  +  Y+ SGGLHGVG SVV
Sbjct: 68  DNAITVQDHGRGMPVGMH--ASGKPTPEVIMTVLHAGGKFGQSDGYKTSGGLHGVGASVV 125

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS  L +T+ R +  + + F  G  P+  L+K  K + + GT ++F+PDPKIF     
Sbjct: 126 NALSSHLTLTIVRDHVRYQEIFKDGGQPVGTLKKLGKTKAENGTTVSFKPDPKIFSTTV- 184

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +D   L    +  A+L   +K   +  +   EK     ++ F F  G++ ++    E + 
Sbjct: 185 YDYNTLANRLRESAFLLKGIKITLTDKRAGQEK-----QDVFQFADGIQEFVSYLNEGKD 239

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340
           ++         ++ G     VE A  + +   E   S+ N + T +GGTHE+G R A T+
Sbjct: 240 VLGK-TLYFDGKQDGV---EVEVAAQYNDGYSESLLSFVNNVRTPDGGTHEAGFRSAWTK 295

Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA+     +    ++   D+      ++SV I E   +F GQTK KL + +A++ V
Sbjct: 296 TFNEYAKKVGLLKANDKNLEGSDVREGLTAVISVRIPERLLQFEGQTKDKLGTPEARKIV 355

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL---RLPGKL 453
           +  + +  ++ L++N   A  L+   ++  E R   RK R   R    +      L GKL
Sbjct: 356 DAIVSEQLNYALMENGDFAQMLIRKALKAREAREAARKARNQARGGKRKGKKERNLSGKL 415

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                  A   ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + +  N+++
Sbjct: 416 TPAQSKNAKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVLKNEEL 475

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++  +G    S++  ED  Y+K+IIMTDAD DGAHI  LLLTFFY+ M  +IE   ++
Sbjct: 476 NTIIYTVGAGAGSEFNVEDSNYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKIY 535

Query: 574 LISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+R+ +G        YA   E   K+ ++  K      ++ RFKGLGEM A QL 
Sbjct: 536 IALPPLYRLQRGRGAKTNITYAWTNEELTKLTKKMGKGA----QLQRFKGLGEMNADQLW 591

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL++V I       +  +  +  LMG K + R ++I+E   F
Sbjct: 592 ETTMNPETRTLIQVRIED----AELAERRVTTLMGNKVEPRREWIEENVQF 638


>gi|300362674|ref|ZP_07058850.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
           gasseri JV-V03]
 gi|300353665|gb|EFJ69537.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
           gasseri JV-V03]
          Length = 655

 Score =  592 bits (1525), Expect = e-167,   Method: Composition-based stats.
 Identities = 247/669 (36%), Positives = 373/669 (55%), Gaps = 20/669 (2%)

Query: 23  LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82
            +   +   + A   +  +D Y+AS I++L GLE VR RPGMYIG T  + LHHL  E+I
Sbjct: 2   AEDKSKAALNKAKDFEKRADTYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEII 61

Query: 83  DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142
           DN++DE +AG+A  IE++++ +G +TV D+GRGIPV+   K   +  LE + T LHAGGK
Sbjct: 62  DNSIDERLAGFATKIEITVNEDGSVTVQDDGRGIPVDIQAK-TGRPALETVFTVLHAGGK 120

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-N 201
           F    Y++SGGLHGVG SVVNALS +L VTV R    ++  F  G  +  +++   V   
Sbjct: 121 FGGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDGKKYAISFDHGRVVGEMKQIGTVPLE 180

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           + GT + F PDP IF +   FD   L    +  A+L+  +K  ++  ++ +      E +
Sbjct: 181 EHGTIVHFYPDPDIFTETTTFDDKILKNRIRELAFLNKGLKLTFTDKRKES-----AETD 235

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            ++F GG+K Y+    + + ++  E    +   +G     VE A+ +       + ++ N
Sbjct: 236 VYHFEGGIKEYVAFLNKGQEVLFDEPIYVEGNYEGI---DVEVALQYTNGYKTTLMTFAN 292

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I T EGG HE+G + ALTR +  YA   +    +  ++  +D+      ++SV    P+
Sbjct: 293 NIHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGITAVVSVKHPNPQ 352

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQRE 437
           F GQTKTKL + DA+  V+ A  + F  +L++NP    K++E   +        +R +  
Sbjct: 353 FEGQTKTKLGNSDARTAVDRAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREV 412

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
             +K+ +    LPGKLAD + N    +ELFIVEG+SAGGSAKQ R+R  QA+LP+RGKIL
Sbjct: 413 TRKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKIL 472

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557
           NV  A  ++I  NQ+I  L  ALG    + +     RY K+IIMTDADVDGAHI +LLLT
Sbjct: 473 NVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIRTLLLT 532

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
            FY  M  +IE+ ++++  PPL+++ QG    Y   +E     L   +     K  + R+
Sbjct: 533 LFYNYMRPMIEKGYVYIARPPLYQVRQGKIEKYLDTDEELHDYLGTLQPS--PKPVVQRY 590

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           KGLGEM   QL ET M+   R L RV         +D     + LMG +   R +FI++ 
Sbjct: 591 KGLGEMDPEQLWETTMNPENRRLDRVSPEY----AEDADKIFDLLMGNEVGPRREFIEKN 646

Query: 678 ASFIDDVGT 686
           A +++++  
Sbjct: 647 AKYVENLDA 655


>gi|116628688|ref|YP_813860.1| DNA gyrase, B subunit [Lactobacillus gasseri ATCC 33323]
 gi|238853343|ref|ZP_04643723.1| DNA gyrase, B subunit [Lactobacillus gasseri 202-4]
 gi|282852320|ref|ZP_06261662.1| DNA gyrase, B subunit [Lactobacillus gasseri 224-1]
 gi|311111572|ref|ZP_07712969.1| DNA gyrase, B subunit [Lactobacillus gasseri MV-22]
 gi|116094270|gb|ABJ59422.1| DNA gyrase subunit B [Lactobacillus gasseri ATCC 33323]
 gi|238834031|gb|EEQ26288.1| DNA gyrase, B subunit [Lactobacillus gasseri 202-4]
 gi|282556062|gb|EFB61682.1| DNA gyrase, B subunit [Lactobacillus gasseri 224-1]
 gi|311066726|gb|EFQ47066.1| DNA gyrase, B subunit [Lactobacillus gasseri MV-22]
          Length = 655

 Score =  592 bits (1525), Expect = e-167,   Method: Composition-based stats.
 Identities = 247/669 (36%), Positives = 373/669 (55%), Gaps = 20/669 (2%)

Query: 23  LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82
            +   +   + A   +  +D Y+AS I++L GLE VR RPGMYIG T  + LHHL  E+I
Sbjct: 2   AEDKSKAALNKAKDFEKRADTYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEII 61

Query: 83  DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142
           DN++DE +AG+A  IE++++ +G +TV D+GRGIPV+   K   +  LE + T LHAGGK
Sbjct: 62  DNSIDERLAGFATKIEITVNEDGSVTVQDDGRGIPVDIQAK-TGRPALETVFTVLHAGGK 120

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-N 201
           F    Y++SGGLHGVG SVVNALS +L VTV R    ++  F  G  +  +++   V   
Sbjct: 121 FGGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDGKKYAISFDHGRVVGEMKQIGTVPLE 180

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           + GT + F PDP IF +   FD   L    +  A+L+  +K  ++  ++ +      E +
Sbjct: 181 EHGTIVHFYPDPDIFTETTTFDDKILKNRIRELAFLNKGLKLTFTDKRKES-----AETD 235

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            ++F GG+K Y+    + + ++  E    +   +G     VE A+ +       + ++ N
Sbjct: 236 VYHFEGGIKEYVAFLNKGQEVLFDEPIYVEGNYEGI---DVEVALQYTNGYKTTLMTFAN 292

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I T EGG HE+G + ALTR +  YA   +    +  ++  +D+      ++SV    P+
Sbjct: 293 NIHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGITAVVSVKHPNPQ 352

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQRE 437
           F GQTKTKL + DA+  V+ A  + F  +L++NP    K++E   +        +R +  
Sbjct: 353 FEGQTKTKLGNSDARTAVDRAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREV 412

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
             +K+ +    LPGKLAD + N    +ELFIVEG+SAGGSAKQ R+R  QA+LP+RGKIL
Sbjct: 413 TRKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKIL 472

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557
           NV  A  ++I  NQ+I  L  ALG    + +     RY K+IIMTDADVDGAHI +LLLT
Sbjct: 473 NVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIRTLLLT 532

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
            FY  M  +IE+ ++++  PPL+++ QG    Y   +E     L   +     K  + R+
Sbjct: 533 LFYNYMRPMIEKGYVYIARPPLYQVRQGKIEKYLDTDEELHDYLGTLQPS--PKPVVQRY 590

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           KGLGEM   QL ET M+   R L RV         +D     + LMG +   R +FI++ 
Sbjct: 591 KGLGEMDPEQLWETTMNPENRRLDRVSPEY----AEDADKVFDLLMGNEVGPRREFIEKN 646

Query: 678 ASFIDDVGT 686
           A +++++  
Sbjct: 647 AKYVENLDA 655


>gi|296876169|ref|ZP_06900223.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           parasanguinis ATCC 15912]
 gi|296432880|gb|EFH18673.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           parasanguinis ATCC 15912]
          Length = 649

 Score =  592 bits (1525), Expect = e-167,   Method: Composition-based stats.
 Identities = 250/658 (37%), Positives = 379/658 (57%), Gaps = 24/658 (3%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +     ++ +  YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +A
Sbjct: 2   TEDKQQENQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+A+ IEV ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++S
Sbjct: 62  GFASHIEVFIEADNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVS 120

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG SVVNALS  L V V +  +I+ Q++ RG  +  L+   +  ++ GT + F P
Sbjct: 121 GGLHGVGSSVVNALSTSLDVRVYKNGSIYYQEYRRGHVVDDLKVIGET-DRTGTTVHFIP 179

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           DP+IF +   +D  +L K  Q  A+L+  ++   +  +E  E     +++ +++ GG+ +
Sbjct: 180 DPEIFTETTEYDFEKLNKRIQELAFLNRGLRISLTDKREGLE-----QEKHYHYEGGISS 234

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           Y++   EN+ +I  +      E       TVE A+ +       + S+ N I T EGGTH
Sbjct: 235 YVEYINENKDVIFEKPIYTDGEMDDI---TVEVAMQYTTGYHETVMSFANNIHTHEGGTH 291

Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           E G R ALTR +  YA+  +  +    ++  +D+      ++SV    P+F GQTKTKL 
Sbjct: 292 EQGFRTALTRVVNDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLG 351

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKL 447
           + +  +       D F  +L++NP  A K++E  ++        +R +    +K+ +   
Sbjct: 352 NSEVVKITNRLFSDAFSDFLLENPQIAKKIVEKGILAAKARVAAKRAREVTRKKSGLEIS 411

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADCS N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI
Sbjct: 412 NLPGKLADCSSNNPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKI 471

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N++I  L  A+G    +++     RY+K++IMTDADVDGAHI +LLLT  Y+ M  ++
Sbjct: 472 LANEEIRSLFTAMGTGFGAEFDVTKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVL 531

Query: 568 EQKHLFLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGE 622
           E  ++++  PP++ +  G++   Y       E      LE +   G+ K  I R+KGLGE
Sbjct: 532 EAGYVYIAQPPIYGVKVGSEIKEYIQPGANQEAELAAALERYS-EGRSKPTIQRYKGLGE 590

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           M   QL ET M+   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 591 MDDHQLWETTMNPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAEY 644


>gi|32448028|gb|AAO16800.1| ParE [Streptococcus mitis]
          Length = 647

 Score =  592 bits (1525), Expect = e-167,   Method: Composition-based stats.
 Identities = 239/653 (36%), Positives = 365/653 (55%), Gaps = 36/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   I+ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGAIYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V    +  +         E  EF++  G++ ++    E+
Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++      + E  G     VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KETLTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + D    +L+++   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 VVDGIVADKLTFFLMEDGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 475 EINTMIYTIGAGVGADFSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +++ ++  K       + R+KGLGEM A Q
Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWKDGELEELRKQLGK----GATLQRYKGLGEMNADQ 590

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I     +L   +  +N LMG K + R K+I++   F
Sbjct: 591 LWETTMNPETRTLIRVTIE----NLARAERRVNVLMGDKVEPRRKWIEDNVKF 639


>gi|223043196|ref|ZP_03613243.1| DNA topoisomerase IV, B subunit [Staphylococcus capitis SK14]
 gi|222443407|gb|EEE49505.1| DNA topoisomerase IV, B subunit [Staphylococcus capitis SK14]
          Length = 666

 Score =  592 bits (1525), Expect = e-167,   Method: Composition-based stats.
 Identities = 236/654 (36%), Positives = 357/654 (54%), Gaps = 31/654 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  + Y   SI++LEGLE VR RPGMYIG TD++ LHHL  EV+DN++DEV+ GY + I 
Sbjct: 4   NKQNTYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEVVDNSVDEVLNGYGDEIT 63

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+++ +  +++ DNGRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG
Sbjct: 64  VTINQDDSISIEDNGRGMPTGIH--ASGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 121

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS+ L V + R   I++Q F  G   +    K+    K GT++TF+PDP+IF  
Sbjct: 122 ASVVNALSEWLEVEIHRDGNIYTQSFKDGGIPATGLNKKGKTKKTGTKVTFKPDPEIFKA 181

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L +  Q  A+L   +K   +  +   E+      E +++  G+K ++    E
Sbjct: 182 TTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERE-----EVYHYEEGIKEFVSYVNE 236

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            + ++              +   VE A  + ++    I S+ N + T +GGTHE G + A
Sbjct: 237 GKEVLHDVTTFSGL----ANNIEVEVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 292

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
           +TR    YA        +  ++  +D+      I+SV I E   +F GQTK+KL + +A+
Sbjct: 293 MTRVFNDYARRINELKDKDKNLDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTSEAR 352

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450
             V++ + +    YL +    +  L++  I+  + R   RK RE  R     K     L 
Sbjct: 353 SAVDSVVSEKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 412

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  E I  N
Sbjct: 413 GKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 472

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    + ++ ED  Y +VIIMTDAD DGAHI  LLLTFF++ M  L++  
Sbjct: 473 EEINTIIHTIGAGVGNDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 532

Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +F+  PPL+++ +G     K  YA  ++  +K+ ++  K       + R+KGLGEM   
Sbjct: 533 RVFIALPPLYKLEKGKGKTKKVEYAWTDDELEKLQKQLGK----GFTLQRYKGLGEMNPE 588

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET M+   RTL+RV++  ++ S K     +  LMG K   R ++I+    F
Sbjct: 589 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVAPRREWIESHVEF 638


>gi|31544928|ref|NP_853506.1| DNA gyrase subunit B [Mycoplasma gallisepticum str. R(low)]
 gi|33860162|sp|P47720|GYRB_MYCGA RecName: Full=DNA gyrase subunit B
 gi|31541775|gb|AAP57074.1| DNA gyrase subunit B [Mycoplasma gallisepticum str. R(low)]
 gi|284931006|gb|ADC30945.1| DNA gyrase subunit B [Mycoplasma gallisepticum str. R(high)]
          Length = 648

 Score =  592 bits (1525), Expect = e-167,   Method: Composition-based stats.
 Identities = 255/660 (38%), Positives = 376/660 (56%), Gaps = 25/660 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           N +  D Y + SI++LEGL  VR RPGMYIG TD+K LHH+  E+IDN++DE++AGY   
Sbjct: 2   NNTKKDQYSSQSIKVLEGLSAVRKRPGMYIGSTDQKGLHHMIWEIIDNSVDEMMAGYGTT 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           ++++L  N  + V D+GRGIPV+ H K  NKST+E +LT LHAGGKFD+ TY +SGGLHG
Sbjct: 62  VKLTLKDNYLVEVEDDGRGIPVDIHEK-TNKSTVETVLTILHAGGKFDSDTYSMSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           VG SVVNALS    V V R   I   +F  G +PL PLE       K+GTRI F PD  I
Sbjct: 121 VGASVVNALSSSFKVWVNRDYKIHYIEFKDGGVPLKPLEIIGTDSKKQGTRIQFVPDFSI 180

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
                 +D   +    +  A+L+  +K  ++ ++   +         + + GG+K Y++ 
Sbjct: 181 MEQF-EYDETIIADRIEQLAFLNKGIKFIFNDERTDKKTKQE-----WLYEGGIKQYVEN 234

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGT-------VEWAIAWCE-ENPEITSYCNTILTDEG 327
              ++  I  +I  G+ + K T           +E A  +         S+CN I T++G
Sbjct: 235 LNASKEPIIPQIIYGEKKTKVTLPKRNLEVTMLLEVAFQYTNGYYNSTYSFCNNIHTNQG 294

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTHE G + AL + I +YA   +  +     I  +DL      I+S+   EP++ GQTK 
Sbjct: 295 GTHEEGFKNALYKIINRYALEKKFIKETDGKISKEDLSEGLTAIISIKHSEPQYQGQTKD 354

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIR 445
           +L + + +    + + +  + + ++NP EA K+    +     R R     E  RK+   
Sbjct: 355 RLGNTEVREFTNSVVSELLERFFLENPEEAAKITAKAVSAMFSRKRSEAALESARKSPFE 414

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC+      +EL+IVEGDSAGGSAK  R+R  QA+LPLRGK+LNV  A  E
Sbjct: 415 SASLPGKLADCTTKDMEISELYIVEGDSAGGSAKSGRDRFYQAILPLRGKVLNVEKANHE 474

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           KI  N++I  L+ A+G     ++  + +RY K+IIMTDADVDGAHI  LLLTFF++ M+ 
Sbjct: 475 KIFKNEEIRTLITAIGAGVNPEFSLDKIRYNKIIIMTDADVDGAHIRILLLTFFFRHMFP 534

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           LIE+ H+++  PPL+R++   ++ Y + +   ++   +   +   + E+ R+KGLGEM  
Sbjct: 535 LIEKGHVYIAQPPLYRVSYNKQNKYIYSDAQLEEWKNQ---NPNVRYELQRYKGLGEMDD 591

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL ET MD  KRTLL+V IN       +   + + LMG +   R  FI++ A  + ++ 
Sbjct: 592 VQLWETTMDPEKRTLLKVSIND----AANADKTFSLLMGDEVSPRRDFIEKNAKSVKNID 647


>gi|148906969|gb|ABR16629.1| unknown [Picea sitchensis]
          Length = 737

 Score =  592 bits (1525), Expect = e-167,   Method: Composition-based stats.
 Identities = 247/671 (36%), Positives = 387/671 (57%), Gaps = 23/671 (3%)

Query: 26  SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNA 85
           +     +   ++  A+ +YDA  I++LEGL+PVR RPGMYIG T  + LHHL  EV+DNA
Sbjct: 78  TSSAVSTEPSSDSPAAKSYDAGQIQVLEGLDPVRKRPGMYIGSTGPRGLHHLVYEVLDNA 137

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE  AG+A  I+V +  +G ++++D+GRGIP + HP   +KS LE +LT LHAGGKF  
Sbjct: 138 IDEAQAGFATNIDVIIFLDGSVSIMDDGRGIPTDLHP-VTHKSALETVLTVLHAGGKFGG 196

Query: 146 ST--YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP---LEKKEKVR 200
            +  Y +SGGLHGVG+SVVNALS++L VTV R    ++Q F+ G P++     E   + +
Sbjct: 197 ESSGYSVSGGLHGVGLSVVNALSEKLEVTVWRDGKEWNQTFACGKPVTELTSNEILGEFK 256

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
            ++GTR+ F PD ++F     FD   ++   +  A+L+ +VK     + + AE     E 
Sbjct: 257 FRQGTRVRFWPDKEVFTTTTEFDYNTIVGRARELAFLNPQVKITLKQENKDAENVTYNE- 315

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCN 320
             +++ GGL  Y+     +++ I   I   + +        ++W          +  Y N
Sbjct: 316 --YHYAGGLVEYVCWLNRDKTPILKPISFTREKDGVIVNVALQWCS--DAYTDTLLGYAN 371

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
           +I T +GG+H  G++ ALTR        ++   ++  ++  + +     GI+SV + +PE
Sbjct: 372 SIRTSDGGSHMDGVKSALTRTFNNLGRKSKLIKEKDENLSGEHVREGLTGIVSVKVPKPE 431

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE- 437
           F GQTKT+L + + +R V+ A+++    YL  NP     +L   +   +  +  +K RE 
Sbjct: 432 FEGQTKTRLGNPEVRRIVDQAVQEYLTEYLECNPGVLESILSKALNAYKAAMAAKKAREL 491

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
           V RK+ +R   LPGKLADCS +     E+FIVEG+SAGGSAKQ R+R  QA+LPLRGKIL
Sbjct: 492 VRRKSVLRPSALPGKLADCSASDPREAEIFIVEGESAGGSAKQGRDRRFQAILPLRGKIL 551

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLL 556
           NV       +  N++I +L+  LG   + +  ++D LRY K+II+TDADVDGAHI +LLL
Sbjct: 552 NVERKDEAAMYKNEEIQNLILGLGLGLKGEDFKKDALRYHKIIILTDADVDGAHIRTLLL 611

Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616
           TFF++    L E+ ++++  PPL+++ +G ++ Y  DE+  +K+ + F  +      I R
Sbjct: 612 TFFFRYQRALFEEGYIYVGVPPLYKVERGRQAHYCFDEDELKKLQKTFPSN--ASYNIQR 669

Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           FKGLGEM+  QL ET +D   R L ++ +        +     + LMG + + R + I+ 
Sbjct: 670 FKGLGEMMPLQLWETTLDPATRKLKQLTVED----AAEANMVFSLLMGNRVEPRKELIEN 725

Query: 677 RASF--IDDVG 685
            AS   I+ + 
Sbjct: 726 SASKISIEKLD 736


>gi|256851678|ref|ZP_05557066.1| DNA gyrase, B subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260661605|ref|ZP_05862517.1| DNA gyrase, B subunit [Lactobacillus jensenii 115-3-CHN]
 gi|282934238|ref|ZP_06339515.1| DNA gyrase, B subunit [Lactobacillus jensenii 208-1]
 gi|297205287|ref|ZP_06922683.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
           jensenii JV-V16]
 gi|256615636|gb|EEU20825.1| DNA gyrase, B subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260547662|gb|EEX23640.1| DNA gyrase, B subunit [Lactobacillus jensenii 115-3-CHN]
 gi|281301712|gb|EFA93979.1| DNA gyrase, B subunit [Lactobacillus jensenii 208-1]
 gi|297149865|gb|EFH30162.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
           jensenii JV-V16]
          Length = 651

 Score =  592 bits (1525), Expect = e-167,   Method: Composition-based stats.
 Identities = 251/654 (38%), Positives = 367/654 (56%), Gaps = 20/654 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +  +D Y+AS I++L GLE VR RPGMYIG T  + LHHL  E+IDN +DE +AG+A  I
Sbjct: 13  EKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNGIDECLAGFATKI 72

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           EV+++ +G +TV D+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGV
Sbjct: 73  EVTVEEDGSVTVQDDGRGIPVDIQEK-TGRPAVETVYTVLHAGGKFGGGGYKVSGGLHGV 131

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIF 216
           G SVVNALS ++ VTV R    +   F  G     L++   V   + GT + F PDP IF
Sbjct: 132 GASVVNALSTKVEVTVMRDGKKYFIDFDHGRVKHELKQIGTVDPGQHGTIVHFYPDPDIF 191

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   FD   L K  Q  A+L+  +K  ++  ++ +      E + +++ GG+K Y+   
Sbjct: 192 TETIVFDDKILKKRIQELAFLNKGLKLTFTDKRKSS-----AETDVYHYEGGIKEYVAFL 246

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            +    +       + +  G     VE A+ +       + ++ N I T EGG HE+G +
Sbjct: 247 DKKEEKLFDTPVYVEGDYDGI---NVEVALQYTTGYKTTMMTFANNIHTYEGGMHEAGFK 303

Query: 336 VALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR I  YA   +  +    ++  +D+      ++S+    P+F GQTKTKL + DA+
Sbjct: 304 TALTRVINDYARKAKIFKDSDTNLSGEDIREGMTAVISIKHPNPQFEGQTKTKLGNSDAR 363

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
             V+ A  + F  +L++NP    K++E      + R+  ++ RE   +K+ +    LPGK
Sbjct: 364 AAVDKAFSEAFSKFLLENPSVGRKIVEKGQLAEKARIAAKRAREVTRKKSGLEIANLPGK 423

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LAD + N    +ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I  NQ+
Sbjct: 424 LADNTSNDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQE 483

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  L  ALG    + +  +  RY K+IIMTDADVDGAHI +LLLT FY+ M  +I+  ++
Sbjct: 484 IRTLFTALGTGFGADFDVKKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMKPMIKAGYV 543

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL+++ QG    Y   +E     L   +     K  + R+KGLGEM A QL ET 
Sbjct: 544 YIARPPLYQVKQGKIIKYLDSDEELHDYLGSLQPS--PKPTVQRYKGLGEMSADQLWETT 601

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           MD   R L RV    D    +D       LMG +   R  FI + A +++++  
Sbjct: 602 MDPENRRLDRV----DPAYAEDADAVFEMLMGNEVGPRRDFITKNAKYVENLDA 651


>gi|282863315|ref|ZP_06272374.1| DNA gyrase, B subunit [Streptomyces sp. ACTE]
 gi|282561650|gb|EFB67193.1| DNA gyrase, B subunit [Streptomyces sp. ACTE]
          Length = 689

 Score =  592 bits (1525), Expect = e-167,   Method: Composition-based stats.
 Identities = 252/686 (36%), Positives = 371/686 (54%), Gaps = 28/686 (4%)

Query: 21  EKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSE 80
                  E   S A      S +YDAS+I +LEGL+ VR RPGMYIG T E+ LHHL  E
Sbjct: 10  ADSGNPNENIPSTAGEQSEGSPSYDASAITVLEGLDAVRKRPGMYIGSTGERGLHHLVQE 69

Query: 81  VIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140
           V+DN++DE +AG+A+ I+V++  +G + VVDNGRGIPV   P    K  +E++LT LHAG
Sbjct: 70  VVDNSVDEAMAGHADTIDVTILADGGVRVVDNGRGIPVGIVP-SEGKPAVEVVLTVLHAG 128

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKF    Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL + E   
Sbjct: 129 GKFGGGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGYRWTQDYKLGVPTAPLARHEATE 188

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE------- 253
              GT +TF  D  IF     +    L +  Q  A+L+  +    + ++E A+       
Sbjct: 189 E-TGTTVTFWADGDIFET-TDYSFETLSRRFQEMAFLNKGLTLKLTDERESAKATAGADS 246

Query: 254 -------KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
                  +        +++  G+  +++     +  +  +       +      +VE A+
Sbjct: 247 AEAVEVPEEESTRTVTYHYEDGIVDFVKYLNSRKGDVIHQSVIDIESEDKERLLSVEIAM 306

Query: 307 AWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLM 363
            W  +  E + S+ N I T EGGTHE G R ALT  + +YA   +   ++  ++  +D+ 
Sbjct: 307 QWNTQYSEGVYSFANAIHTHEGGTHEEGFRAALTSLVNRYARDKKLLREKDDNLTGEDVR 366

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                I+SV + EP+F GQTKTKL + +A+  V+  + +    +  +NP EA  ++   I
Sbjct: 367 EGLTAIISVKLGEPQFEGQTKTKLGNTEAKTFVQKVVHEQLTDWFDRNPNEAADIIRKGI 426

Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
             S  R+  RK R++ R+   +    LPGKL+DC  N     E+FIVEGDSAGGSAK  R
Sbjct: 427 AASTARVAARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGR 486

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           N   QA+LP+RGKILNV  A  +KI  N ++  L+ A G      +  E LRY K+I+M 
Sbjct: 487 NPMYQAILPIRGKILNVEKARVDKILQNTEVQALISAFGTGVHEDFDIEKLRYHKIILMA 546

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKIL 601
           DADVDG HI +LLLTF ++ M  L+E  H++L  PPL++I  G     YA+ +  +  ++
Sbjct: 547 DADVDGQHINTLLLTFLFRFMRPLVEAGHVYLSRPPLYKIKWGRDDFEYAYSDRERDALV 606

Query: 602 EEFKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
              K++GK   +  I RFKGLGEM A +L+ T MD + R L +V ++          D  
Sbjct: 607 ALGKQNGKRIKEDSIQRFKGLGEMNAEELRITTMDIDHRVLGQVTLDD----AAQADDLF 662

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
           + LMG   + R  FIQ  A  +  + 
Sbjct: 663 SVLMGEDVEARRSFIQRNAKDVRFLD 688


>gi|227543440|ref|ZP_03973489.1| DNA topoisomerase IV subunit B [Lactobacillus reuteri CF48-3A]
 gi|300910107|ref|ZP_07127567.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus reuteri
           SD2112]
 gi|227186592|gb|EEI66663.1| DNA topoisomerase IV subunit B [Lactobacillus reuteri CF48-3A]
 gi|300892755|gb|EFK86115.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus reuteri
           SD2112]
          Length = 674

 Score =  592 bits (1525), Expect = e-167,   Method: Composition-based stats.
 Identities = 243/651 (37%), Positives = 363/651 (55%), Gaps = 34/651 (5%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YDASSI++L+GLE VR RPGMYIG TD + LHHL  E++DNA+DE ++GY + I V+++ 
Sbjct: 13  YDASSIQVLKGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGDEINVTIEA 72

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGVGISVV 162
           +  +TV D+GRG+PV  H     K T E+I+T LHAGGKF  +  Y+ SGGLHGVG SVV
Sbjct: 73  DNAITVQDHGRGMPVGMH--ASGKPTPEVIMTVLHAGGKFGQSDGYKTSGGLHGVGASVV 130

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS  L +T+ R +  + + F  G  P+  L+K  K + + GT ++F+PDPKIF     
Sbjct: 131 NALSSHLTLTIVRDHVRYQEIFKDGGQPVGTLKKLGKTKAENGTTVSFKPDPKIFSTTV- 189

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +D   L    +  A+L   +K   +  +   EK     ++ F F  G++ ++    E + 
Sbjct: 190 YDYNTLANRLRESAFLLKGIKITLTDKRAGQEK-----QDVFQFDNGIQEFVSYLNEGKD 244

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340
           ++         ++ G     VE A  + +   E   S+ N + T +GGTHE+G R A T+
Sbjct: 245 VLGK-TLYFDGKQDGV---EVEVAAQYNDGYSESLLSFVNNVRTPDGGTHEAGFRSAWTK 300

Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA+     +    ++   D+      ++SV I E   +F GQTK KL + +A++ V
Sbjct: 301 TFNEYAKKVGLLKANDKNLEGSDVREGLTAVISVRIPERLLQFEGQTKDKLGTPEARKIV 360

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL---RLPGKL 453
           +  + +  ++ L++N   A  L+   ++  E R   RK R   R    +      L GKL
Sbjct: 361 DAIVSEQLNYALMENGDFAQMLIRKALKAREAREAARKARNQARGGKRKGKKERNLSGKL 420

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                  A   ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + +  N+++
Sbjct: 421 TPAQSKNAKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVLKNEEL 480

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++  +G    S++  ED  Y+K+IIMTDAD DGAHI  LLLTFFY+ M  +IE   ++
Sbjct: 481 NTIIYTVGAGAGSEFNVEDSNYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKIY 540

Query: 574 LISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+R+ +G        YA   E   K+ ++  K      ++ RFKGLGEM A QL 
Sbjct: 541 IALPPLYRLQRGRGAKTNITYAWTNEELTKLTKKMGKGA----QLQRFKGLGEMNADQLW 596

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL++V I       +  +  +  LMG K + R ++I+E   F
Sbjct: 597 ETTMNPETRTLIQVRIED----AELAERRVTTLMGNKVEPRREWIEENVQF 643


>gi|289434570|ref|YP_003464442.1| DNA topoisomerase IV, B subunit [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289170814|emb|CBH27356.1| DNA topoisomerase IV, B subunit [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 655

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 240/652 (36%), Positives = 359/652 (55%), Gaps = 35/652 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           ++Y+  SI++LEGL+ VR RP MYIG TD + LHHL  E++DN++DE +AG+   I V+L
Sbjct: 4   NDYNDDSIQVLEGLDAVRKRPAMYIGSTDVRGLHHLVYEIVDNSVDEALAGFGKKIVVTL 63

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGVGIS 160
             +G ++V D GRG+PV  H     KST+E+ILT LHAGGKF     Y+ SGGLHGVG S
Sbjct: 64  HDDGSVSVSDEGRGMPVGMHK--TGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGVGSS 121

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ L VTV R    + QKF  G       KK       GT I F+PDP IF    
Sbjct: 122 VVNALSEWLVVTVNRDGAKYEQKFKDGGKPDGTLKKIGKSKATGTTIRFKPDPAIFPTT- 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            ++   L +  +  A+L   +      ++   E       E F+F  G+K +++   E +
Sbjct: 181 SYNYETLSERLRESAFLLKGMLIQLIDERVGME-------ESFHFEEGVKNFVEYINEGK 233

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
            ++     + + E        VE A  + +     I S+ N + T   G+HESG++ A+T
Sbjct: 234 DVLHPVA-SFEGENATI---EVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMT 289

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395
           R    YA       ++  ++   D+      +LS+ + E   +F GQTK KL + +A++ 
Sbjct: 290 RIFNDYARRVNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQA 349

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGK 452
           V+  + +   ++L +NP  ++ L++  ++  E R   RK RE  R    +K     L GK
Sbjct: 350 VDAVVAEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGK 409

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L        +  EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I  N++
Sbjct: 410 LTPAQSRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEE 469

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++  +G    +++   D  Y+KV+IMTDAD DGAHI  LLLTFFY+ M  L+E   +
Sbjct: 470 ISTIIHTVGAGVGTEFDVADCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKV 529

Query: 573 FLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           F+  PPL+++++G   K V  YA  +E     +++  K       I R+KGLGEM A QL
Sbjct: 530 FIALPPLYKVSRGSGKKEVIEYAWTDEELDSAIQKIGK----GYMIQRYKGLGEMNADQL 585

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET M+ + RTL+RV ++         +  +  LMG K + R K+I++   F
Sbjct: 586 WETTMNPDTRTLIRVRVDD----SARAERRVATLMGDKVEPRRKWIEKHVEF 633


>gi|282881781|ref|ZP_06290439.1| DNA gyrase, B subunit [Peptoniphilus lacrimalis 315-B]
 gi|281298391|gb|EFA90829.1| DNA gyrase, B subunit [Peptoniphilus lacrimalis 315-B]
          Length = 639

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 259/648 (39%), Positives = 379/648 (58%), Gaps = 21/648 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YDA  I++L+GLEPVR RPGMYIG T EK LHHL  EV+DN++DE +AG  + I++ +  
Sbjct: 8   YDAGDIQVLKGLEPVRKRPGMYIGSTGEKGLHHLVYEVVDNSIDEALAGICDHIKIVITK 67

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           NG   V DNG GIPVE HP+   KST+E +LT LHAGGKFDN  Y++SGGLHGVG+SVVN
Sbjct: 68  NGSCYVEDNGSGIPVEIHPQ-TGKSTVETVLTILHAGGKFDNKAYKVSGGLHGVGVSVVN 126

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222
           ALS  L  T+ R   I+SQ+F RG  +S L++  KV +N+ GT+I F PDP+IF     F
Sbjct: 127 ALSTHLKATIKRNGKIYSQEFQRGKAISSLKEIGKVDKNQTGTKIEFTPDPEIFDTV-EF 185

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  A+L+  +K  ++ ++       I + E +++ GG+K++++     +  
Sbjct: 186 SFDILSKRFREMAFLNKGIKIDFTDER-------INKNEIYHYEGGIKSFVEYINSKKKY 238

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
                       +     ++E AI + +    E+ ++ N I T+EGG+H SG R A+T+ 
Sbjct: 239 -EPIHDEIIYIDEIRENTSIEVAIQYTKSYSEEVLTFANNINTEEGGSHLSGFRSAITKT 297

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +  Y        ++  ++  DD+      +LSV +  P+F GQTK KL + + +  V++ 
Sbjct: 298 VNDYGRKYNFIKEKEENLSGDDIREGMTAVLSVKLPNPQFEGQTKAKLGNSETKGVVDSV 357

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
           + +    +L +NP  +  +LE  +     R   R+ RE++R      + LPGKL DCS  
Sbjct: 358 VSEKLSMFLEENPKTSKAILEKAVAARRARDAARRAREISRAKNNLDMTLPGKLFDCSDV 417

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
            +  +E+F+VEG+SAGGSAK  R+   QAVLPLRGKI+NV  A   K+ N+ +I  ++ A
Sbjct: 418 GSEKSEIFLVEGNSAGGSAKDGRDPEFQAVLPLRGKIMNVEKATEAKMLNSSEIKAMITA 477

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
            G     ++    LRY K+IIMTDADVDGAHI +LLLTFF++ M  LIE  H+++   PL
Sbjct: 478 FGTGYAGEFDISKLRYNKIIIMTDADVDGAHIMTLLLTFFFRYMRPLIENGHVYVAQAPL 537

Query: 580 FRITQGTKS-VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           + + + +K   Y H+EE     L+  +      I I R+KGLGEM   QL ET M+ + R
Sbjct: 538 YGLEKNSKILRYCHNEEELNLALKAHESE--KNINIKRYKGLGEMNYDQLWETTMNPDNR 595

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
            LLRV I        +T D+   LMG + + R +FI E A + D +  
Sbjct: 596 LLLRVNIED----FDETDDTFQMLMGQEVEPRREFISENAQYADYIDA 639


>gi|55822558|ref|YP_140999.1| DNA topoisomerase IV subunit B [Streptococcus thermophilus
           CNRZ1066]
 gi|55738543|gb|AAV62184.1| DNA topoisomerase IV (subunit B) [Streptococcus thermophilus
           CNRZ1066]
          Length = 649

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 233/652 (35%), Positives = 369/652 (56%), Gaps = 32/652 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ ++I V+L
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGDVIAVTL 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G ++V D+GRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSVSVSDSGRGMPTGMH--AMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEK-VRNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R  +++ Q+F  G  P++ LEK  K  ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGSVYRQRFENGGHPVTGLEKIGKEPKSKTGTKVTFMPDASIFSTT 186

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   V    +  +   E      +EEF++  G++ ++    E+
Sbjct: 187 -DFKFNTISERLKESAFLLKNVTMTLTDLRGEEE-----VREEFHYENGVQDFVSYLNED 240

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
           +  ++  I+    ++       +++   + +    I S+ N + T +GGTHE+G + A+T
Sbjct: 241 KETLTPVIYIDGDQQDFHLELALQYNDGYSDN---ILSFVNNVRTKDGGTHETGFKSAIT 297

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQRT 395
           +    YA  T    ++  ++   D       ++S+ +     +F GQTK KL S  A+  
Sbjct: 298 KAFNDYARKTGLLKEKDKNLEGSDYREGLSAVISLLVPEEHLQFEGQTKDKLGSPLARPI 357

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGK 452
           V+  + +   ++L++N   A+ L+   I+  + R   RK R+ +R     K       GK
Sbjct: 358 VDGIVSEYLTYFLMENGDLASNLVRKAIKARDAREAARKARDASRNGKKNKKDKGLLSGK 417

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L       A   EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N++
Sbjct: 418 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++  +G    + +  +D+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H+
Sbjct: 478 INTMIYTIGAGVGADFNLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHV 537

Query: 573 FLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           ++  PPL+++++G        YA  +   +++ ++F +       + R+KGLGEM A QL
Sbjct: 538 YIALPPLYKMSKGKGKKEVVEYAWTDGELEELRQKFGRGAL----LQRYKGLGEMNADQL 593

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET M+   RTL+RV I+     L   +  ++ LMG KA  R ++I++   F
Sbjct: 594 WETTMNPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 641


>gi|256374166|ref|YP_003097826.1| DNA gyrase, B subunit [Actinosynnema mirum DSM 43827]
 gi|255918469|gb|ACU33980.1| DNA gyrase, B subunit [Actinosynnema mirum DSM 43827]
          Length = 657

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 252/664 (37%), Positives = 376/664 (56%), Gaps = 27/664 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +   +Y ASSI +LEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +AGYA+ + 
Sbjct: 3   AQKKDYGASSITVLEGLEAVRKRPGMYIGSTGERGLHHLIQEVVDNSVDEAMAGYASKVV 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+L  NG + VVD+GRGIPV+ HP    K TLE++LT LHAGGKFD+ +Y +SGGLHGVG
Sbjct: 63  VTLLANGGVRVVDDGRGIPVDLHP-VEGKPTLEVVLTKLHAGGKFDSDSYAVSGGLHGVG 121

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           ISVVNALS  + V V RQ   ++Q+F    P   L++        GT ITF  DP IF  
Sbjct: 122 ISVVNALSTAVDVEVKRQGFTWNQRFEASKPAHELQRGVPTSE-TGTTITFWADPTIFET 180

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------EIAEKYGIPEKEEFYFPGGL 269
              ++   + +  Q  A+L+  +      ++         +         +  F++PGGL
Sbjct: 181 -TDYNIETISRRLQEMAFLNKGLSIVLRDERVAEEGAEEADAEGHVAKVRERVFHYPGGL 239

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           + +++     R  +  ++ + + +        VE A+ W     P + ++ NTI T EGG
Sbjct: 240 EDFVRHLNHTREAVHQKVVSFEAKGDD---LEVEVAMQWNTGYTPSVYTFANTINTHEGG 296

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           THE G R ALTR + +YA   +   ++  ++  DD+      I+SV ++EP+F GQTKTK
Sbjct: 297 THEEGFRAALTRVVNEYARDKKLIKEKDANLTGDDIREGLAAIISVKLKEPQFEGQTKTK 356

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           L + +A+  V+ +  +    +  ++P EA  ++   +  S+ R+  RK RE V RK A+ 
Sbjct: 357 LGNSEAKSFVQKSTNEHLADWFERHPNEAKTIITKAVSSSQARIAARKARELVRRKGALD 416

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKL DC  +     E++IVEGDSAGGSAK+ R+   QA+LP+RGKI+NV  A  +
Sbjct: 417 IGGLPGKLKDCRSSNPEECEVYIVEGDSAGGSAKEGRDSMYQAILPIRGKIINVEKARID 476

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           ++  N ++  ++ A+G     ++    LRY KV++M DADVDG HI +LLLT  ++ M  
Sbjct: 477 RVLKNTEVQSIITAMGTGIHDEFDVSKLRYHKVVLMADADVDGQHIRTLLLTLLFRFMRP 536

Query: 566 LIEQKHLFLISPPLFRITQ-GTKSVYAHDEEHKQKILEEFKKHGK---GKIEISRFKGLG 621
           L+E  H++L  PPL++I     +  YA+ +  +  ++E+    GK       I R+KGLG
Sbjct: 537 LLEHGHVYLAQPPLYKIKWLRAEPEYAYSDRERDGLIEQGLAAGKKIGKDDNIQRYKGLG 596

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           EM A +L ET MD   R LL+V ++          +  + LMG   + R  FI   A  +
Sbjct: 597 EMNAEELWETTMDPANRVLLQVTMDD----AAAADELFSVLMGEDVEARRSFITRNAKGV 652

Query: 682 DDVG 685
             + 
Sbjct: 653 RFLD 656


>gi|224476482|ref|YP_002634088.1| DNA topoisomerase IV subunit B [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421089|emb|CAL27903.1| topoisomerase IV subunit B [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 666

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 239/656 (36%), Positives = 368/656 (56%), Gaps = 31/656 (4%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
             +   NY   SI++LEGLE VR RPGMYIG TD++ LHHL  E++DN++DEV+ G+ N 
Sbjct: 2   ATNKRQNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGFGNE 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+V+++ +  +TV DNGRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHG
Sbjct: 62  IKVTINKDDSITVEDNGRGMPTGIHK--SGKPTVEVIFTILHAGGKFGQGGYKTSGGLHG 119

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS+ L V + R   I+ QKF++G   +   +K+    K+GT++TF+P+P+IF
Sbjct: 120 VGASVVNALSEWLDVEIYRDGYIYEQKFNKGGLPATGLEKKGKTRKKGTKVTFKPNPEIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                F+   L +  Q  A+L   +K   +  +   E+      E +++  G+K ++   
Sbjct: 180 KSTTAFNFDTLSERLQESAFLLKDLKITLTDLRSGKERE-----EIYHYEEGIKEFVSYV 234

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            E + ++  ++ T   E  G     V+ A  + ++    I S+ N + T +GGTHE G +
Sbjct: 235 NEGKEVLH-DVSTFSGESHGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFK 290

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLD 391
            A+TR    YA        +  ++  +D+      I+SV I E   +F GQTK+KL + +
Sbjct: 291 TAMTRVFNDYARRIGELKAKDKNLEGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTAE 350

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LR 448
           A+  V++ + +   +YL +    +  L++  ++  + R   RK RE  R     K     
Sbjct: 351 ARSAVDSVITEKLPYYLEEKGQLSKSLVKKAVKAQQAREAARKAREDARTGKKNKRKDTL 410

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           L GKL           EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  + I 
Sbjct: 411 LSGKLTPAQSKNTEKKELYLVEGDSAGGSAKLGRDRKYQAILPLRGKVINTEKARLDDIF 470

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            N++I  ++  +G    ++++ ED  Y +VIIMTDAD DGAHI  LLLTFF++ M  L++
Sbjct: 471 KNEEINTIIHTIGAGVGNEFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQ 530

Query: 569 QKHLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
              +F+  PPL+++ +G     K  YA  +E  +K+ ++  K       + R+KGLGEM 
Sbjct: 531 AGRVFIALPPLYKLEKGKGKSKKVEYAWTDEELEKLQKKLGK----GFSLQRYKGLGEMN 586

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
             QL ET M+   RTL+RV++  ++ S K     +  LMG K   R ++I+    F
Sbjct: 587 PDQLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVAPRREWIERHVEF 638


>gi|55981555|ref|YP_144852.1| DNA gyrase subunit B [Thermus thermophilus HB8]
 gi|55772968|dbj|BAD71409.1| DNA gyrase, subunit B [Thermus thermophilus HB8]
          Length = 634

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 266/652 (40%), Positives = 368/652 (56%), Gaps = 29/652 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +YDAS+IR+L+GLE VR RP MYIGGT  +  HHLF E++DNA+DE +AGYA  I V L+
Sbjct: 2   SYDASAIRVLKGLEGVRHRPAMYIGGTGVEGYHHLFKEILDNAVDEALAGYATEILVRLN 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G LTV DNGRGIPV+  P+   K  +E+I TTLH+GGKF+   Y++SGGLHGVG SVV
Sbjct: 62  EDGSLTVEDNGRGIPVDLMPE-EGKPAVEVIYTTLHSGGKFEQGAYKVSGGLHGVGASVV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221
           NALS+   V V R+       FSRG    PL    +  R K GTR+TF+PDP+IFG+   
Sbjct: 121 NALSEWTVVEVFREGKHHRIAFSRGEVTEPLRVVGEAPRGKTGTRVTFKPDPEIFGN-LR 179

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD +++    +  AYL   +K  +   +   E       E F   GG+ ++ +   E   
Sbjct: 180 FDPSKIRARLREVAYLVAGLKLVFQDRQHGKE-------EVFLDKGGVASFAKALAEGED 232

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTR 340
           L+  + F  +          VE      +    EI +Y N I T +GGTH +  + A +R
Sbjct: 233 LLYEKPFLIRG---THGEVEVEVGFLHTQGYNAEILTYANMIPTRDGGTHLTAFKSAYSR 289

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            + +YA+      ++      DDL+     ++SV +  P+F GQTK KL++ +A   V  
Sbjct: 290 ALNQYAKKAGLNKEKGPQPTGDDLLEGLYAVVSVKLPNPQFEGQTKGKLLNPEAGTAVGQ 349

Query: 399 ALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
            + +     L +NP  A  +  + +         R+ +  V R+  +    LPGKLADC 
Sbjct: 350 VVYERLLEILEENPRIAKAVYEKALRAAQAREAARKARELVRRQNPLESDELPGKLADCQ 409

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                  ELFIVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  AG  K   N ++  +V
Sbjct: 410 TENPEEAELFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKAGLSKALKNAEVRAMV 469

Query: 518 QALGCRT----RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            A+G        + +  E LRY K+IIMTDADVDG+HI +LLLTFFY+ M  LIE+ H++
Sbjct: 470 SAIGVGIGGDGEAHFDLEGLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPLIERGHVY 529

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           +  PPL+R+  G K  Y + +E  Q  L+E +       E+ RFKGLGEM   QL ET M
Sbjct: 530 IAQPPLYRLQVGKKVEYLYSDEELQARLKELEGKH---YEVQRFKGLGEMNPEQLWETTM 586

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +  KR L RVE+   L    +  +   KLMG +   R +FI+E A + + + 
Sbjct: 587 NPEKRVLKRVELQDAL----EASELFEKLMGQEVAPRREFIEEHARYAE-LD 633


>gi|229544207|ref|ZP_04433266.1| DNA topoisomerase IV, B subunit [Bacillus coagulans 36D1]
 gi|229325346|gb|EEN91022.1| DNA topoisomerase IV, B subunit [Bacillus coagulans 36D1]
          Length = 659

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 246/658 (37%), Positives = 361/658 (54%), Gaps = 34/658 (5%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            A +     Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DE ++GY 
Sbjct: 1   MAKKQNILEYNDDAIQVLEGLEAVRKRPGMYIGSTDARGLHHLVYEIVDNAVDEALSGYG 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           N I V++  +  ++V D GRG+PV  H     K T E+ILT LHAGGKF    Y+ SGGL
Sbjct: 61  NHIIVNIHKDNSISVQDFGRGMPVGMHK--LGKPTTEVILTILHAGGKFGQGGYKTSGGL 118

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS+ L VT+ R   ++ Q+F  G       +K    NK GT I F+PDP 
Sbjct: 119 HGVGASVVNALSEWLVVTIHRDGYVYEQRFRDGGKPETTLEKTGKTNKTGTTIHFKPDPS 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     F+   L +  +  A+L   +K   + ++           + F++  G++ ++Q
Sbjct: 179 IFSTIT-FNYDTLCERLRESAFLLKGLKIEITDER-------FGRHDLFHYENGIEAFVQ 230

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              E + ++   +   + E  G      E+A  + +     I S+ N + T +GGTHE+G
Sbjct: 231 YLNEGKEVLHPVV-FIEGETNGI---EAEFAFQFNDGFSENILSFVNNVRTKDGGTHEAG 286

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVS 389
            + ALTR +  YA  T    ++  ++   D+      I+SV I E   +F GQTK KL +
Sbjct: 287 AKTALTRVVNDYARKTGLLKEKDKNLEGTDIREGLSAIISVRIPEELLQFEGQTKGKLGT 346

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK--- 446
            +A+  V+  + +   ++L +NP  +  L+   I+ S+ R   RK RE  R    RK   
Sbjct: 347 SEARSAVDTIVSEHLSYFLEENPDTSNLLIRKAIKASQAREAARKAREEARSGKKRKKSE 406

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             L GKL           EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    
Sbjct: 407 TTLSGKLTPAQSRNPQRNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLAD 466

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           I  N++I  ++  +G     ++  ED+ Y+KVIIMTDAD DGAHI  LLLTFFY+ M  L
Sbjct: 467 IFKNEEINTIIYTIGAGVGPEFNLEDVNYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPL 526

Query: 567 IEQKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
           IE   +++  PPL+++++GT       YA  E+   + +++  +       + R+KGLGE
Sbjct: 527 IEAGKVYIALPPLYKVSKGTGRKEIVEYAWTEKELDETIKKVGR----GYILQRYKGLGE 582

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           M A QL ET M+   RTL+RV I+         +  +  LMG K + R ++I+    F
Sbjct: 583 MNADQLWETTMNPETRTLIRVRIDD----AARAERRVTTLMGDKVEPRRQWIESHVEF 636


>gi|313633453|gb|EFS00279.1| DNA topoisomerase IV, B subunit [Listeria seeligeri FSL N1-067]
          Length = 655

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 240/652 (36%), Positives = 359/652 (55%), Gaps = 35/652 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           ++Y+  SI++LEGL+ VR RP MYIG TD + LHHL  E++DN++DE +AG+   I V+L
Sbjct: 4   NDYNDDSIQVLEGLDAVRKRPAMYIGSTDVRGLHHLVYEIVDNSVDEALAGFGKKIVVTL 63

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGVGIS 160
             +G ++V D GRG+PV  H     KST+E+ILT LHAGGKF     Y+ SGGLHGVG S
Sbjct: 64  HDDGSVSVSDEGRGMPVGMHK--TGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGVGSS 121

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ L VTV R    + QKF  G       KK       GT I F+PDP IF    
Sbjct: 122 VVNALSEWLVVTVNRDGAKYEQKFKDGGKPDGTLKKIGKSKATGTTIRFKPDPAIFPTT- 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            ++   L +  +  A+L   +      ++   E       E F+F  G+K +++   E +
Sbjct: 181 SYNYETLSERLRESAFLLKGMLIQLIDERVGME-------ESFHFEEGVKNFVEYINEGK 233

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
            ++     + + E        VE A  + +     I S+ N + T   G+HESG++ A+T
Sbjct: 234 DVLHPVA-SFEGENATI---EVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMT 289

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395
           R    YA       ++  ++   D+      +LS+ + E   +F GQTK KL + +A++ 
Sbjct: 290 RVFNDYARRVNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQA 349

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGK 452
           V+  + +   ++L +NP  ++ L++  ++  E R   RK RE  R    +K     L GK
Sbjct: 350 VDAVVAEHLAYFLAENPETSSLLVKKAVKAREARDAARKAREETRNGKKKKRSETLLSGK 409

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L        +  EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I  N++
Sbjct: 410 LTPAQSRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEE 469

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++  +G    +++   D  Y+KV+IMTDAD DGAHI  LLLTFFY+ M  L+E   +
Sbjct: 470 ISTIIHTVGAGVGTEFDVADCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKV 529

Query: 573 FLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           F+  PPL+++++G   K V  YA  +E     +++  K       I R+KGLGEM A QL
Sbjct: 530 FIALPPLYKVSRGSGKKEVIEYAWTDEELDSAIQKIGK----GYMIQRYKGLGEMNADQL 585

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET M+ + RTL+RV ++         +  +  LMG K + R K+I++   F
Sbjct: 586 WETTMNPDTRTLIRVRVDD----SARAERRVATLMGDKVEPRRKWIEKHVEF 633


>gi|157363918|ref|YP_001470685.1| DNA gyrase, B subunit [Thermotoga lettingae TMO]
 gi|157314522|gb|ABV33621.1| DNA gyrase, B subunit [Thermotoga lettingae TMO]
          Length = 630

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 258/645 (40%), Positives = 372/645 (57%), Gaps = 20/645 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y A SIRIL+GLE VR+RPGMYIG T +  LHHL  E++DN++DEV+AG+ N I V+L 
Sbjct: 3   DYKAESIRILKGLEAVRLRPGMYIGSTGKSGLHHLVYEIVDNSIDEVMAGFCNTIRVTLF 62

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  + + DNGRGIPV+ HP+   +S LE+++TTLHAGGKF  + Y++SGGLHGVG SVV
Sbjct: 63  EDNTVEIEDNGRGIPVDTHPE-TGRSALEVVMTTLHAGGKFSKNIYKVSGGLHGVGASVV 121

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+ L V + ++  I+ QK+SRG P   +    +   + GT + F+PD +IF     F
Sbjct: 122 NALSEILEVWIHKEGKIYYQKYSRGFPQCEVTVIGETDKQ-GTIVRFKPDDQIFS-ILKF 179

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   +    +  A+L+ +VK  +       E          ++ GGL+ Y +     R  
Sbjct: 180 DPDLIENKLRELAFLNPQVKIIF-------EDLANEYTVTMHYEGGLREYARYLASGRKP 232

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGI 342
           I   I       +   +  + +  ++ E   +I SY N I T + GTH +  +   T+ +
Sbjct: 233 IHETIEVSGELDEIIVKIAIMYTDSYEE--EKIYSYANNIRTIDHGTHVTAFKNTFTKML 290

Query: 343 KKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            +YA      K+  S   +D+    + I++V ++EPEF GQTK+KL S  A   V   L+
Sbjct: 291 NEYARSLGILKKDESFSGEDVREGLIAIVTVLMKEPEFEGQTKSKLGSESAGIAVSRILK 350

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNI 460
           +    Y   N      +LE V++    R   RK RE   RK A+  L LPGKLADC  + 
Sbjct: 351 EKLSEYFEVNKQVLKVILEKVLKTMRAREAARKARELARRKNAMENLSLPGKLADCVSSN 410

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +ELFIVEGDSAGGSAKQAR+R  QA+LPLRGKILNV  +  +K+  N+QI D++ A+
Sbjct: 411 VENSELFIVEGDSAGGSAKQARDREYQAILPLRGKILNVEKSSMQKLLANEQIKDIIVAV 470

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           G      +    LRY K+IIMTDAD+DGAHI +LLLTFF++ M  LIE   +++  PPL+
Sbjct: 471 GTGIGDSFDSSKLRYGKIIIMTDADIDGAHIRTLLLTFFFRYMKPLIEDGRIYIAVPPLY 530

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           +++  + SVY + EE  Q +  E  +    K+E+ R+KGLGEM   QL ET M+   R L
Sbjct: 531 KVSFSSNSVYVYTEEDFQALRRELGEE--RKLEVQRYKGLGEMNPEQLWETTMNPETRKL 588

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           ++V I     + ++       LMG    ER +FI+  A  +  + 
Sbjct: 589 IQVNIE----NAEEADALFEILMGESPSERRRFIERHALKVTYLD 629


>gi|148271184|ref|YP_001220745.1| DNA gyrase subunit B [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147829114|emb|CAN00011.1| DNA gyrase subunit B [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 681

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 255/693 (36%), Positives = 383/693 (55%), Gaps = 24/693 (3%)

Query: 2   TDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMR 61
           +D + DL     P      ++++      DS     Q  S++Y A+ I++LEGLE VR R
Sbjct: 3   SDATQDLPDDSTP------DEVEVEETHNDSDHITRQQVSNDYGANEIQVLEGLEAVRKR 56

Query: 62  PGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENH 121
           PGMYIG T  + LHHL SE++DN++DE +AG+A+ I++++  +G + VVD+GRGIPV+ H
Sbjct: 57  PGMYIGSTGPRGLHHLVSEIVDNSVDEALAGFASDIQITMRKDGGIRVVDDGRGIPVDIH 116

Query: 122 PKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFS 181
           P     ST+E++LT LHAGGKF    Y +SGGLHGVG SVVNALS+ L V V RQ  ++ 
Sbjct: 117 P-VEGISTVELVLTKLHAGGKFGGGGYAVSGGLHGVGSSVVNALSERLDVEVRRQGAVWR 175

Query: 182 QKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241
           Q F+ G+P  PL+K E      GT ITF P  +IF     FD   L    Q  A+L+  +
Sbjct: 176 QSFTIGVPDEPLQKGEGSTE-TGTTITFWPSREIFET-VEFDYDTLRARFQQMAFLNKGL 233

Query: 242 KTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKGTHRG 300
                 ++E+         E+F +  GL  Y++  ++ +            E +    + 
Sbjct: 234 ALTLHDEREVD--GAEHRTEKFLYERGLVDYVEHLVKAKKTEVVNADVIAFESEDTVKKI 291

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISI 357
           ++E A+ W       + +Y NTI T EGGTHE G R ALT  + +YA   +   ++  ++
Sbjct: 292 SLEVAMQWTTSYTESVHTYANTINTHEGGTHEEGFRAALTTLVNRYARENKLLREKDENL 351

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      ++SV + EP+F GQTKTKL + +A+  V+  +      +L +NP +A  
Sbjct: 352 TGDDVREGLTAVISVKLGEPQFEGQTKTKLGNTEAKAYVQRIVGQQLGDWLEKNPSQAKD 411

Query: 418 LLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   ++ S+ RL  RK RE  R+   +    +PGKL DC       +E+F+VEGDSAGG
Sbjct: 412 IIRKGMQASQARLAARKAREQTRRKGLLESGGMPGKLKDCQSKDPALSEVFLVEGDSAGG 471

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SA Q RN + QA+LPLRGKILNV  A  ++   N ++  ++ A G      +  E +RY 
Sbjct: 472 SAVQGRNPTTQAILPLRGKILNVEKARLDRALQNNEVQSMITAFGAGIGEDFNAEKVRYH 531

Query: 537 KVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEE 595
           K+++M DADVDG HI +LLLT  ++ M  LIE  +++L  PPL+R+     +  Y + + 
Sbjct: 532 KIVLMADADVDGQHITTLLLTLLFRYMRPLIELGYVYLAQPPLYRLKWSNAEHQYVYTDA 591

Query: 596 HKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652
            +  +L   +  GK   +   I R+KGLGEM   +L ET MD   RTL++V ++      
Sbjct: 592 ERDALLVHGQAKGKKMPKDNGIQRYKGLGEMDYKELWETTMDPATRTLMQVTLDD----A 647

Query: 653 KDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
               +  + LMG   + R  FIQ  A  +  + 
Sbjct: 648 AGADEVFSTLMGEDVESRRSFIQRNAKDVRFLD 680


>gi|226362903|ref|YP_002780683.1| DNA gyrase subunit B [Rhodococcus opacus B4]
 gi|226241390|dbj|BAH51738.1| DNA gyrase subunit B [Rhodococcus opacus B4]
          Length = 680

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 242/690 (35%), Positives = 367/690 (53%), Gaps = 47/690 (6%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
            +      ++S +Y ASSI +LEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +
Sbjct: 2   AAQKSDKSTSSKDYGASSITVLEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNSVDEAM 61

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AGYA+ +E++L  +G + VVD+GRGIPV  H       T+E++LT LHAGGKFD+ +Y +
Sbjct: 62  AGYASKVEITLLEDGGVQVVDDGRGIPVGMH--ASGVPTVEVVLTQLHAGGKFDSDSYAV 119

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVGISVVNALS  L V + R    ++Q ++   P   ++   +   + GT + F 
Sbjct: 120 SGGLHGVGISVVNALSTRLDVDIKRDGFRWNQTYTDSKPGELVK--GEATKETGTTVRFW 177

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------------ 258
            DP IF     +    + +  Q  A+L+  +    + ++    +                
Sbjct: 178 ADPNIFETTV-YSFETVARRLQEMAFLNKGLTITLTDERVSDAEVTEEVVSQVADAPKTA 236

Query: 259 ---------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
                          +   +++PGGL+ Y++     +  I + +     +  G     +E
Sbjct: 237 EDESAEAGAPAVHKVKTRVYHYPGGLEDYVRHINRTKQPIHNSVVGFTAKGTGH---ELE 293

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISD 360
            A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++   +  D
Sbjct: 294 IAMQWNSGYSESVHTFANTINTHEGGTHEEGFRSALTATVNKYALDKKLLKEKDPKLTGD 353

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  ++ 
Sbjct: 354 DIREGLAAIISVKVGEPQFEGQTKTKLGNTEVRSFVQKASNEHLSHWFEANPADAKTIVN 413

Query: 421 WVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
             +  ++ R+  RK RE V RK+A     LPGKLADC  N    +E++IVEGDSAGGSAK
Sbjct: 414 KAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPSKSEIYIVEGDSAGGSAK 473

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
             R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K++
Sbjct: 474 SGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDIAKLRYHKIV 533

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQ 598
           +M DADVDG HIA+LLLT  ++ M  L+E  H++L  PPL+++        +A+ +  + 
Sbjct: 534 LMADADVDGQHIATLLLTLLFRFMRPLVEHGHVYLAQPPLYKLKWQRADPEFAYSDRERD 593

Query: 599 KILE---EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
            +++   E  K       I R+KGLGEM A +L ET MD   R L  V ++         
Sbjct: 594 ALVKAGLESGKKINKDDGIQRYKGLGEMNAKELWETTMDPTVRVLRLVTLDD----AAAA 649

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
            +  + LMG   + R  FI   A  +  + 
Sbjct: 650 DELFSVLMGEDVEARRSFITRNAKDVRFLD 679


>gi|188582557|ref|YP_001926002.1| DNA topoisomerase IV subunit B [Methylobacterium populi BJ001]
 gi|179346055|gb|ACB81467.1| DNA topoisomerase IV, B subunit [Methylobacterium populi BJ001]
          Length = 647

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 386/651 (59%), Positives = 481/651 (73%), Gaps = 11/651 (1%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A   YDAS+I +LEGLEPVR RPGMYIGGTDE+ALHHLF+EVIDN+MDE +AG+A+ IEV
Sbjct: 2   AEAGYDASAIEVLEGLEPVRRRPGMYIGGTDERALHHLFAEVIDNSMDEAVAGHASFIEV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L+  G L V DNGRGIPV+ HPKFP KS LE+I+TTLHAGGKFD+  YE SGGLHGVGI
Sbjct: 62  ELEETGALVVTDNGRGIPVDPHPKFPGKSALEVIMTTLHAGGKFDSKVYETSGGLHGVGI 121

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALSD L V VAR  T++ Q FSRG    PLE   +V+N+RGTR+ F PD +IFG  
Sbjct: 122 SVVNALSDVLEVEVARNQTLYRQTFSRGHAQGPLETLGRVQNRRGTRVRFHPDAQIFGS- 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY-FPGGLKTYLQTKLE 278
             FD  RL KM +SKAYL G V+  W C   + E       E  + FPGGL  YL   +E
Sbjct: 181 LKFDPRRLFKMARSKAYLFGGVEIRWRCAPALLEGLEDVPAEAVHRFPGGLSDYLARDIE 240

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVA 337
            + L+   IF+GK  K G+H G++EWA+AW   ++    SYCNTI T EGGTHESGLRVA
Sbjct: 241 GKELVLDAIFSGKVTKPGSH-GSLEWAVAWTVADDGVSHSYCNTIPTPEGGTHESGLRVA 299

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L R ++++AE     KR  S+ +DD++ +   +LSVFIREPEF GQTK KL +++A R V
Sbjct: 300 LLRALREHAERVNQAKRMTSVTTDDVLATCASMLSVFIREPEFQGQTKDKLATVEASRIV 359

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           E A+RD FDH+L  +P +A KLL+WVI+R+EERLRRR+++EV RK+A RKLRLPGKLADC
Sbjct: 360 ETAVRDAFDHWLAASPAQANKLLDWVIDRAEERLRRRQEKEVARKSATRKLRLPGKLADC 419

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S     G+E+FIVEGDSAGGSAKQAR+R+ QAVLPLRGKILNVASA  +K+  NQ I DL
Sbjct: 420 SAAGTAGSEIFIVEGDSAGGSAKQARDRATQAVLPLRGKILNVASASRDKLGANQLISDL 479

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             ALGC T + +RE DLRY++VIIMTDADVDGAHIASLL+TFFY++M  LI++ HL+L  
Sbjct: 480 TLALGCGTGANFREGDLRYDRVIIMTDADVDGAHIASLLITFFYRQMPKLIDKGHLYLAI 539

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI+QG KS YA D+  K++I++   K+G  K+EI RFKGLGEM+ +QLKET MD  
Sbjct: 540 PPLYRISQGAKSAYARDDADKERIIKTVFKNG--KVEIGRFKGLGEMMPAQLKETTMDPK 597

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685
           KRTLLRV +     + + T D++ +LMG K + RF FI ERA+F D  ++ 
Sbjct: 598 KRTLLRVAVLD--EARESTGDTVERLMGNKPEARFAFITERAAFADGTELD 646


>gi|260904977|ref|ZP_05913299.1| DNA gyrase subunit B [Brevibacterium linens BL2]
          Length = 665

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 252/663 (38%), Positives = 364/663 (54%), Gaps = 28/663 (4%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YDA  I +LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AGY + IEV++  
Sbjct: 9   YDAGDITVLEGLEAVRKRPGMYIGSTSERGLHHLVQEIVDNSVDEAMAGYCSHIEVTILA 68

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G + VVD+GRG+PV  HP    K T+E+ILT LHAGGKF    Y ++GGLHGVG +VVN
Sbjct: 69  DGGVRVVDDGRGMPVAMHP-TEGKPTVEVILTILHAGGKFGGGGYAVAGGLHGVGSTVVN 127

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS+ L V V R    ++  F +G+P   L +  +     GT +TF PD  IF     F 
Sbjct: 128 ALSERLEVEVRRDGYFWNMNFEKGVPTGELTRGAETSE-TGTMVTFWPDSTIFET-TDFS 185

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDK------------EIAEKYGIPEKEEFYFPGGLKT 271
              L    Q  A+L+  +K   + ++            E  E    P +  +++  GL  
Sbjct: 186 YEYLRARFQQMAFLNKGMKISLTDERHVQVDDDNVQIDEDEETDAKPREATYHYEHGLLD 245

Query: 272 YLQTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
           Y+Q     +            E ++     ++E A+ W       + +Y N I T EGGT
Sbjct: 246 YVQYLNSTKKADLVHPDVIVFEAEEAEETLSLEIAMQWTTSYSESVHTYANVINTHEGGT 305

Query: 330 HESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           HE G R ALT  I  YA   +   ++  ++  DD+      ++SV + +P+F GQTKTKL
Sbjct: 306 HEEGFRTALTSLINNYAREQKLLREKDANLTGDDIREGLTAVISVKLGDPQFEGQTKTKL 365

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRK 446
            + + +  V+  +RD   H++  NP +A  ++   ++ S+ RL  RK RE  R+   +  
Sbjct: 366 GNSEVKGFVQRVVRDELGHWMESNPAQAKDVVRKGLQASQARLAARKAREATRRKGLLES 425

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             +PGKL DC       +E+FIVEGDSAGGSA Q RN + QA+LPLRGKILNV  A  ++
Sbjct: 426 SGMPGKLKDCQSKDPTISEVFIVEGDSAGGSATQGRNPNTQAILPLRGKILNVEKARLDR 485

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
              N ++  ++ A G     ++  E LRY K+++M DADVDG HI +LLLT  ++ M  L
Sbjct: 486 ALGNNEVQAMITAFGTGIGEEFDLEKLRYHKIVLMADADVDGQHITTLLLTLIFRYMKPL 545

Query: 567 IEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGE 622
           IE  +++L +PPL+RI        +A+ E+    +LE  K  GK   +   I R+KGLGE
Sbjct: 546 IEHGYVYLATPPLYRIKWSNAPHEFAYTEKESDGLLEAGKAAGKRLPKDMAIQRYKGLGE 605

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           M  S+L ET MD + R L +V ++  +       +    LMG   D R +FIQE A  + 
Sbjct: 606 MNYSELWETTMDPDHRLLKQVSLDDGIV----ADEIFTVLMGDDVDSRRRFIQENAKDVR 661

Query: 683 DVG 685
            + 
Sbjct: 662 FLD 664


>gi|111020663|ref|YP_703635.1| DNA gyrase subunit B [Rhodococcus jostii RHA1]
 gi|110820193|gb|ABG95477.1| DNA topoisomerase subunit B [Rhodococcus jostii RHA1]
          Length = 696

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 245/697 (35%), Positives = 370/697 (53%), Gaps = 47/697 (6%)

Query: 24  KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVID 83
           K+S     +      ++S +Y ASSI +LEGLE VR RPGMYIG T E+ LHHL  EV+D
Sbjct: 11  KESYPPVAAQKSDKSTSSKDYGASSITVLEGLEAVRKRPGMYIGSTGERGLHHLIWEVVD 70

Query: 84  NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143
           N++DE +AG+A  +E++L  +G + VVD+GRGIPV  H       T+E++LT LHAGGKF
Sbjct: 71  NSVDEAMAGHATKVEITLLEDGGVRVVDDGRGIPVGMH--ASGVPTVEVVLTQLHAGGKF 128

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+ +Y +SGGLHGVGISVVNALS  L V + R    + Q ++   P   ++   +   + 
Sbjct: 129 DSDSYAVSGGLHGVGISVVNALSTRLDVDIKRDGFQWHQTYTDSKPGELVK--GEATKET 186

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-------------- 249
           GT +TF  DP IF     +    + +  Q  A+L+  +    + ++              
Sbjct: 187 GTTVTFWADPNIFETTV-YSFETVARRLQEMAFLNKGLTITLTDERVSDAEVTEEVVSQV 245

Query: 250 -------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG 296
                          A      +   +++PGGL+ Y++     +  I + +     +  G
Sbjct: 246 ADAPKTAEDESAEAEAPAVHKVKTRVYHYPGGLEDYVRHINRTKQPIHNSVVGFTAKGTG 305

Query: 297 THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKR 353
                +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++
Sbjct: 306 H---ELEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRSALTATVNKYALDKKLLKEK 362

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
              +  DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP 
Sbjct: 363 DPKLTGDDIREGLAAIISVKVGEPQFEGQTKTKLGNTEVRSFVQKASNEHLSHWFEANPA 422

Query: 414 EATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
           +A  ++   +  ++ R+  RK RE V RK+A     LPGKLADC  N    +E++IVEGD
Sbjct: 423 DAKTIVNKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPSKSEIYIVEGD 482

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           SAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    
Sbjct: 483 SAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDIAK 542

Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYA 591
           LRY K+++M DADVDG HIA+LLLT  ++ M  L+E  H++L  PPL+++     +  +A
Sbjct: 543 LRYHKIVLMADADVDGQHIATLLLTLLFRFMRPLVEHGHVYLAQPPLYKLKWQRSEPEFA 602

Query: 592 HDEEHKQKILE---EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648
           + +  +  +++   E  K       I R+KGLGEM A +L ET MD   R L  V ++  
Sbjct: 603 YSDRERDVLVKAGLESGKKINKDDGIQRYKGLGEMNAKELWETTMDPTVRVLRLVTLDD- 661

Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
                   +  + LMG   + R  FI   A  +  + 
Sbjct: 662 ---AAAADELFSVLMGEDVEARRSFITRNAKDVRFLD 695


>gi|322389902|ref|ZP_08063442.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           parasanguinis ATCC 903]
 gi|321143338|gb|EFX38776.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           parasanguinis ATCC 903]
          Length = 649

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 251/658 (38%), Positives = 377/658 (57%), Gaps = 24/658 (3%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +     ++ +  YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +A
Sbjct: 2   TEDKQQENQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+A+ IEV ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++S
Sbjct: 62  GFASHIEVFIEADNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVS 120

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG SVVNALS  L V V +  +I  Q++ RG  +  L+   +  ++ GT + F P
Sbjct: 121 GGLHGVGSSVVNALSTSLDVRVYKNGSIHYQEYRRGHVVDDLKIIGET-DRTGTTVHFIP 179

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           DP+IF +   +D  +L K  Q  A+L+  ++   +  +E  E     +++ +++ GG+ +
Sbjct: 180 DPEIFTETTEYDFEKLNKRIQELAFLNRGLRISLTDKREGLE-----QEKHYHYEGGISS 234

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           Y++   EN+ +I         E       TVE A+ +       + S+ N I T EGGTH
Sbjct: 235 YVEYINENKDVIFETPIYTDGEMDDI---TVEVAMQYTTGYHETVMSFANNIHTHEGGTH 291

Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           E G R ALTR I  YA+  +  +    ++  +D+      ++SV    P+F GQTKTKL 
Sbjct: 292 EQGFRTALTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLG 351

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKL 447
           + +  +       D F  +L++NP  A K++E  ++        +R +    +K+ +   
Sbjct: 352 NSEVVKITNRLFSDAFSDFLLENPQIAKKIVEKGILAAKARVAAKRAREVTRKKSGLEIS 411

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADCS N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI
Sbjct: 412 NLPGKLADCSSNNPEETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKI 471

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N++I  L  A+G    +++     RY+K++IMTDADVDGAHI +LLLT  Y+ M  ++
Sbjct: 472 LANEEIRSLFTAMGTGFGAEFDVTKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVL 531

Query: 568 EQKHLFLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGE 622
           E  ++++  PP++ +  G++   Y       E      LE +   G+ K  I R+KGLGE
Sbjct: 532 EAGYVYIAQPPIYGVKVGSEIKEYIQPGANQEAELAAALERYS-EGRSKPTIQRYKGLGE 590

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           M   QL ET M+   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 591 MDDHQLWETTMNPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAEY 644


>gi|284010227|dbj|BAI66713.1| DNA gyrase B [Borrelia sp. Tick98M]
          Length = 625

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 234/639 (36%), Positives = 360/639 (56%), Gaps = 19/639 (2%)

Query: 51  ILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVV 110
           +L+GLE VR RPGMYIG      LHHL  E+IDN++DE + G+ + IEV ++ +  +TV 
Sbjct: 1   VLKGLEAVRKRPGMYIGSVSINGLHHLVYELIDNSIDEALGGFCDKIEVIINSDNSITVS 60

Query: 111 DNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELH 170
           DNGRGIP + H +    S LE++LT LH+GGKF+  TY++SGGLHGVGISVVNALS  L 
Sbjct: 61  DNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVVNALSSFLE 119

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V V R   +F Q FSRGI  S ++   +  + RGTR+TF  D +IF     +    L + 
Sbjct: 120 VFVYRDGKVFRQTFSRGISTSEVDIVGESSS-RGTRVTFLADSEIFETL-EYSFETLSRR 177

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  A+L+ +++      +   +++       FY+ GG+K ++     N   I S  +  
Sbjct: 178 LRELAFLNDKLQISIEDRRLEEKRFLE-----FYYEGGIKAFVDYLTNNSKSIQSGPYFI 232

Query: 291 KT-EKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
           +   ++      ++W   +   +  I S+ N I T +GGTH +G R  L + + +  + +
Sbjct: 233 EGISEEVIVTVGLKWTEGY---SENILSFVNNIKTQDGGTHVAGFRSGLFKAMNEAYKRS 289

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
           +   K   ++  DD       ++S+ + EP+F GQTK KL +   ++ V+    D     
Sbjct: 290 KISKKDVPNLTLDDFKEGLTAVVSIKLPEPQFEGQTKGKLGNSYVKKIVDTITYDGLLKV 349

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
           +  NP+E   + +  I+ +  R   RK R    +K+    L LPGKLADC+       E+
Sbjct: 350 VDDNPLEVEIIFDKAIKAARAREAARKARESERKKSTFESLALPGKLADCASKNPIEREI 409

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS 526
           +IVEGDSAGGSAK  RNR  QA+LPL GK+LNV     +K+  N +++ ++ +LG     
Sbjct: 410 YIVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGK 469

Query: 527 QYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT 586
            +  E LRY KVIIM DADVDG+HI +LLLTFF++ M DLIE  H+++  PPL+++    
Sbjct: 470 TFCIERLRYHKVIIMADADVDGSHIRTLLLTFFFRYMRDLIENSHVYIAMPPLYKVKSEN 529

Query: 587 KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646
           +  Y +D+  K+  LE  +   + K+ + R+KGLGEM  +QL ET M+ + R +  V I+
Sbjct: 530 RVHYFYDDLEKESFLESIESEKRDKVNLQRYKGLGEMNPTQLWETTMNPDTRKMKLVGID 589

Query: 647 KDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             +      +     LMG   + R +FI++ A  + ++ 
Sbjct: 590 DSM----QAERIFVTLMGDDVEPRREFIEQNALDVVNLD 624


>gi|162147271|ref|YP_001601732.1| DNA topoisomerase IV subunit B [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161785848|emb|CAP55419.1| putative DNA gyrase subunit B [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 678

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 350/686 (51%), Positives = 463/686 (67%), Gaps = 15/686 (2%)

Query: 5   SIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGM 64
           + DLFS   P+ +         G     PA     A   YDAS+I +LEGLEPVR RPGM
Sbjct: 2   NDDLFSAARPKREPRGR-----GAASAPPAPVRNDAGGEYDASAIEVLEGLEPVRRRPGM 56

Query: 65  YIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKF 124
           YIGGTDE A HHL SE++DNAMDE +AG+A  I+V+L+   +LT+ DNGRGIPV+ HPKF
Sbjct: 57  YIGGTDEGAYHHLASEILDNAMDEAVAGHATTIDVTLEAGDWLTIRDNGRGIPVDPHPKF 116

Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184
            ++S LE+ILTTLHAGGKF    Y  SGGLHGVG SVVNAL+  + V VAR   ++ Q +
Sbjct: 117 KDRSALEVILTTLHAGGKFSGKAYATSGGLHGVGSSVVNALAARMEVEVARDRAVWRQVY 176

Query: 185 SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244
            RG P++ LEK    +N+RGT+I F PDP+IFG    F  ARL ++ +SKAYL   V   
Sbjct: 177 ERGHPVTMLEKVGATQNRRGTQIRFTPDPQIFGRIH-FSPARLYRLCRSKAYLFRGVTIR 235

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----KKGTHRG 300
           WSCD  +     IP +   +FPGGL   L+ +L N + + +E+++G+ +      G   G
Sbjct: 236 WSCDPALVRDADIPAEAVLHFPGGLADSLRDELGNAA-LLTEMWSGEADLPVGPDGADTG 294

Query: 301 TVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359
            +EWA+A+ E       SYCNTI T +GGTHE+G R AL +G + + E   NKRA ++ +
Sbjct: 295 RMEWAVAFLESGSASLSSYCNTIPTPQGGTHEAGFRAALLKGFRAWGEQRSNKRAAAVNA 354

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD++ +    LSVFIR+P+F GQTK KL S +A R +E ALRD F+ +L  +P +A  LL
Sbjct: 355 DDVLGAIAAKLSVFIRDPQFQGQTKEKLTSSEASRLIETALRDRFEQWLAGHPAQADNLL 414

Query: 420 EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
            ++IER+EERLRR+  ++  RK+A R+LRLPGKL DC++  A  TE+F+VEGDSAGGSAK
Sbjct: 415 AFIIERAEERLRRKDLKDTPRKSATRRLRLPGKLTDCTRENAAETEIFLVEGDSAGGSAK 474

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
           QARNR  QAVLPLRGKILNVASA +EK+R NQ++ DLV+ALGC    ++    LRY +++
Sbjct: 475 QARNRETQAVLPLRGKILNVASASTEKLRANQELRDLVEALGCGIGERFDATRLRYGRIV 534

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599
           IMTDADVDGAHIASLL+TFFY+E+ DLI Q HL+L  PPL+R+TQG K++YA D+  +++
Sbjct: 535 IMTDADVDGAHIASLLMTFFYRELPDLIRQGHLYLAQPPLYRLTQGGKTIYAMDDTDRER 594

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
            L+   K    K+E+SRFKGLGEM    LK+T MD   RTLL+V           T D +
Sbjct: 595 KLKSNFK-PNAKVEVSRFKGLGEMPPGDLKQTTMDPRHRTLLKVV--TRPEDRALTSDRV 651

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
             LMG + + RF+FIQE A  ++D+ 
Sbjct: 652 EHLMGRRPELRFQFIQEHAQTVEDLD 677


>gi|46907513|ref|YP_013902.1| DNA topoisomerase IV subunit B [Listeria monocytogenes str. 4b
           F2365]
 gi|217964571|ref|YP_002350249.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes HCC23]
 gi|226223889|ref|YP_002757996.1| DNA gyrase-like protein (subunit B) [Listeria monocytogenes
           Clip81459]
 gi|254824653|ref|ZP_05229654.1| DNA topoisomerase IV subunit B [Listeria monocytogenes FSL J1-194]
 gi|254852660|ref|ZP_05242008.1| DNA topoisomerase IV subunit B [Listeria monocytogenes FSL R2-503]
 gi|254932397|ref|ZP_05265756.1| DNA topoisomerase IV subunit B [Listeria monocytogenes HPB2262]
 gi|254993571|ref|ZP_05275761.1| DNA topoisomerase IV subunit B [Listeria monocytogenes FSL J2-064]
 gi|255520561|ref|ZP_05387798.1| DNA topoisomerase IV subunit B [Listeria monocytogenes FSL J1-175]
 gi|300765323|ref|ZP_07075307.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes FSL N1-017]
 gi|46880781|gb|AAT04079.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|217333841|gb|ACK39635.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes HCC23]
 gi|225876351|emb|CAS05060.1| Putative DNA gyrase-like protein (subunit B) [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258605977|gb|EEW18585.1| DNA topoisomerase IV subunit B [Listeria monocytogenes FSL R2-503]
 gi|293583953|gb|EFF95985.1| DNA topoisomerase IV subunit B [Listeria monocytogenes HPB2262]
 gi|293593891|gb|EFG01652.1| DNA topoisomerase IV subunit B [Listeria monocytogenes FSL J1-194]
 gi|300514006|gb|EFK41069.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes FSL N1-017]
 gi|307570865|emb|CAR84044.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes L99]
 gi|328468575|gb|EGF39575.1| DNA topoisomerase IV subunit B [Listeria monocytogenes 1816]
 gi|328475129|gb|EGF45913.1| DNA topoisomerase IV subunit B [Listeria monocytogenes 220]
          Length = 655

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 240/652 (36%), Positives = 359/652 (55%), Gaps = 35/652 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + Y+  SI++LEGLE VR RP MYIG TD + LHHL  E++DN++DE +AG+   I V+L
Sbjct: 4   NEYNDDSIQVLEGLEAVRKRPAMYIGSTDVRGLHHLVYEIVDNSVDETLAGFGKKIVVTL 63

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGVGIS 160
             +G ++V D GRG+PV  H     KST+E+ILT LHAGGKF     Y+ SGGLHGVG S
Sbjct: 64  HVDGSVSVSDEGRGMPVGMHK--TGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGVGSS 121

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ L VT+ R    + QKF  G       KK       GT I F+PDP IF    
Sbjct: 122 VVNALSEWLVVTINRDGATYQQKFKDGGKPDGTLKKIGKSKATGTTIRFKPDPAIFPTT- 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F+   L +  +  A+L   +      ++       +   E F+F  G+K +++   E +
Sbjct: 181 SFNYETLSERLRESAFLLKGMLIELIDER-------VGMAEAFHFEEGVKNFVEYINEGK 233

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
            ++     + + E        VE A  + +     I S+ N + T   G+HESG++ A+T
Sbjct: 234 DVLHPVA-SFEGENATI---EVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMT 289

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395
           R    YA       ++  ++   D+      +LS+ + E   +F GQTK KL + +A++ 
Sbjct: 290 RIFNDYARRVNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQA 349

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGK 452
           V+  + +   ++L +NP  ++ L++  ++  E R   RK RE  R    +K     L GK
Sbjct: 350 VDAVVAEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGK 409

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L        +  EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I  N++
Sbjct: 410 LTPAQSRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEE 469

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++  +G    +++  ED  Y+KV+IMTDAD DGAHI  LLLTFFY+ M  L+E   +
Sbjct: 470 ISTIIHTVGAGVGTEFDVEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKV 529

Query: 573 FLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           F+  PPL+++++G   K V  YA  +E     +++  K       I R+KGLGEM A QL
Sbjct: 530 FIALPPLYKVSRGSGKKEVIEYAWTDEELDSAIQKIGK----GYMIQRYKGLGEMNADQL 585

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET M+ + RTL+RV ++         +  +  LMG K + R ++I++   F
Sbjct: 586 WETTMNPDTRTLIRVRVDD----SARAERRVATLMGDKVEPRRQWIEKHVEF 633


>gi|313638149|gb|EFS03407.1| DNA topoisomerase IV, B subunit [Listeria seeligeri FSL S4-171]
          Length = 655

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 238/652 (36%), Positives = 361/652 (55%), Gaps = 35/652 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           ++Y+  SI++LEGL+ VR RP MYIG TD + LHHL  E++DN++DE +AG+   I V+L
Sbjct: 4   NDYNDDSIQVLEGLDAVRKRPAMYIGSTDVRGLHHLVYEIVDNSVDEALAGFGKKIVVTL 63

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGVGIS 160
             +G ++V D GRG+PV  H     KST+E+ILT LHAGGKF     Y+ SGGLHGVG S
Sbjct: 64  HDDGSVSVSDEGRGMPVGMHK--TGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGVGSS 121

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ L VT+ R+   + Q+F  G   +   KK       GT I F+PDP IF    
Sbjct: 122 VVNALSEWLVVTINREGATYEQRFKNGGKPNGTLKKIGKSKATGTTIRFKPDPAIFPTT- 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            ++   L +  +  A+L   +      ++   E       E F+F  G+K +++   E +
Sbjct: 181 SYNYETLSERLRESAFLLKGMLIQLIDERVGME-------ESFHFEEGVKNFVEYINEGK 233

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
            ++     + + E        VE A  + +     I S+ N + T   G+HESG++ A+T
Sbjct: 234 DVLHPVA-SFEGENATI---EVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMT 289

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395
           R    YA       ++  ++   D+      +LS+ + E   +F GQTK KL + +A++ 
Sbjct: 290 RVFNDYARRVNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQA 349

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGK 452
           V+  + +   ++L +NP  ++ L++  ++  E R   RK RE  R    +K     L GK
Sbjct: 350 VDAVVAEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGK 409

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L        +  EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I  N++
Sbjct: 410 LTPAQSRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEE 469

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++  +G    +++   D  Y+KV+IMTDAD DGAHI  LLLTFFY+ M  L+E   +
Sbjct: 470 ISTIIHTVGAGVGTEFDVADCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKV 529

Query: 573 FLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           F+  PPL+++++G   K V  YA  +E     +++  K       I R+KGLGEM A QL
Sbjct: 530 FIALPPLYKVSRGSGKKEVIEYAWTDEELDSAIQKIGK----GYMIQRYKGLGEMNADQL 585

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET M+ + RTL+RV ++         +  +  LMG K + R K+I++   F
Sbjct: 586 WETTMNPDTRTLIRVRVDD----TARAERRVATLMGDKVEPRRKWIEKHVEF 633


>gi|300934345|ref|ZP_07149601.1| DNA gyrase subunit B [Corynebacterium resistens DSM 45100]
          Length = 674

 Score =  591 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 260/686 (37%), Positives = 373/686 (54%), Gaps = 48/686 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              Q   +NY ASSI ILEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +AGYA
Sbjct: 1   MGEQQKKNNYGASSITILEGLEAVRKRPGMYIGSTGERGLHHLVWEVVDNSVDEAMAGYA 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           N + V L  +G + V DNGRGIPVE HP      T+++++T LHAGGKFD+ +Y +SGGL
Sbjct: 61  NEVTVKLLEDGGVEVEDNGRGIPVEKHP--SGPPTVQVVMTQLHAGGKFDSDSYAVSGGL 118

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVGISVVNALS  +   + R   ++ Q F+  +P    +   K     GTR  F PDP+
Sbjct: 119 HGVGISVVNALSTRVETEIKRDGYLWRQVFNNAVPEELEQV--KKARGTGTRQRFWPDPE 176

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK------------------------- 249
           IF     F+   + K  Q  A+L+  +      ++                         
Sbjct: 177 IFET-VEFNFKTVAKRLQEMAFLNKGLTINLIDERPQVEAEDELADAAEDADAPKTSEEK 235

Query: 250 -EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
            +  +    P K+ F++P GLK Y+      ++ +   I + + + +      VE A+ W
Sbjct: 236 AQEEKAKKEPTKKTFHYPEGLKDYVDFINSKKTAVHPTIISFEAKGEDH---EVEVALQW 292

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
                  + ++ NTI T EGGTHE G R ALT  + +YA   +    +  +   DD+   
Sbjct: 293 NSGYAQSVHTFANTINTFEGGTHEEGFRAALTSLMNRYAREHKLLKDKDPNFSGDDVREG 352

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              ++SV + +P+F GQTKTKL + + +  V+ A+ +    +L  NP EA  ++   +  
Sbjct: 353 LAAVISVRVGDPQFEGQTKTKLGNTEIKGFVQRAVNEHLSDWLDANPAEAKVIVNKAVAS 412

Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           +  R+  RK R+ V RK+A     LPGKLADC    A  +EL+IVEGDSAGGSAK  R+ 
Sbjct: 413 AHARMAARKARDLVRRKSASDLGGLPGKLADCRSKDAKLSELYIVEGDSAGGSAKSGRDS 472

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA+LPLRGKILNV  A  +KI  N ++  ++ ALG     ++    LRY K+++M DA
Sbjct: 473 MFQAILPLRGKILNVEKARMDKILKNAEVQAIITALGTGIHDEFDISKLRYHKIVLMADA 532

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603
           DVDG HIA+LLLT  ++ M  L+E+ +++L +PPL+++  G  +  +A  +  + K+LEE
Sbjct: 533 DVDGQHIATLLLTLLFRFMRPLVEEGYVYLANPPLYKLKWGKGEPGFAFSDRERDKLLEE 592

Query: 604 FKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
               G+ KI     I R+KGLGEM A +L ET MD   R L RV +           +  
Sbjct: 593 GLAAGR-KINKDDGIQRYKGLGEMNAKELWETTMDPEYRVLRRVTLED----AAGADELF 647

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
           + LMG     R  FI   A  +  + 
Sbjct: 648 SILMGDDVVARRSFITRNARDVRFLD 673


>gi|325978151|ref|YP_004287867.1| topoisomerase IV subunit B [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325178079|emb|CBZ48123.1| topoisomerase IV subunit B [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 649

 Score =  591 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 236/653 (36%), Positives = 368/653 (56%), Gaps = 34/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ N I+V +
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLVWEIVDNAVDEALSGFGNQIDVII 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +  +TV D GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NSDDSVTVSDQGRGMPTGKH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMPDDTIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   V    + ++         E  EF++  G++ +++   E+
Sbjct: 186 IDFKFNTIAERLKESAFLLKDVTLTLTDNR-----PEEAEHLEFHYENGVQDFVEYLNED 240

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++  I     ++       VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 241 KETLTPVISVTGEDQN----FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 296

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  +    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 297 TKAMNDYARKSGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARP 356

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + +   ++L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 357 IVDGIVSEKLTYFLLENGEIASNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 416

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN A A    I  N+
Sbjct: 417 KLTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMSDIVKNE 476

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    +++  E+  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 477 EINTMIYTIGAGVGAEFNVENSNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 536

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +++ ++F K      ++ R+KGLGEM A Q
Sbjct: 537 VYIALPPLYKMSKGKGKKEQVEYAWTDGELEELRQKFGK----GAQLQRYKGLGEMNADQ 592

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 593 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 641


>gi|284931763|gb|ADC31701.1| DNA gyrase subunit B [Mycoplasma gallisepticum str. F]
          Length = 648

 Score =  591 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 255/660 (38%), Positives = 376/660 (56%), Gaps = 25/660 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           N +  D Y + SI++LEGL  VR RPGMYIG TD+K LHH+  E+IDN++DE++AGY   
Sbjct: 2   NNTKKDQYSSQSIKVLEGLSAVRKRPGMYIGSTDQKGLHHMIWEIIDNSVDEMMAGYGTT 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           ++++L  N  + V D+GRGIPV+ H K  NKST+E +LT LHAGGKFD+ TY +SGGLHG
Sbjct: 62  VKLTLKDNYLVEVEDDGRGIPVDIHEK-TNKSTVETVLTILHAGGKFDSDTYSMSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           VG SVVNALS    V V R   I   +F  G +PL PLE       K+GTRI F PD  I
Sbjct: 121 VGASVVNALSSSFKVWVNRDYKIHYIEFKDGGVPLKPLEIIGTDNKKQGTRIQFVPDFSI 180

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
                 +D   +    +  A+L+  +K  ++ ++   +         + + GG+K Y++ 
Sbjct: 181 MEQF-EYDETIISDRIEQLAFLNKGIKFIFNDERTDKKTKQE-----WLYEGGIKQYVEN 234

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGT-------VEWAIAWCE-ENPEITSYCNTILTDEG 327
              ++  I  +I  G+ + K T           +E A  +         S+CN I T++G
Sbjct: 235 LNASKEPIIPQIIYGEKKTKVTLPKRNLEVTMLLEVAFQYTNGYYNSTYSFCNNIHTNQG 294

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTHE G + AL + I +YA   +  +     I  +DL      I+S+   EP++ GQTK 
Sbjct: 295 GTHEEGFKNALYKIINRYALEKKFIKETDGKISKEDLSEGLTAIISIKHSEPQYQGQTKD 354

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIR 445
           +L + + +    + + +  + + ++NP EA K+    +     R R     E  RK+   
Sbjct: 355 RLGNTEVREFTNSVVSELLERFFLENPEEAAKITAKAVSAMFSRKRSEAALESARKSPFE 414

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC+      +EL+IVEGDSAGGSAK  R+R  QA+LPLRGK+LNV  A  E
Sbjct: 415 SASLPGKLADCTTKDMEISELYIVEGDSAGGSAKSGRDRFYQAILPLRGKVLNVEKANHE 474

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           KI  N++I  L+ A+G     ++  + +RY K+IIMTDADVDGAHI  LLLTFF++ M+ 
Sbjct: 475 KIFKNEEIRTLITAIGAGVNPEFSLDKIRYNKIIIMTDADVDGAHIRILLLTFFFRHMFP 534

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           LIE+ H+++  PPL+R++   ++ Y + +   ++   +   +   + E+ R+KGLGEM  
Sbjct: 535 LIEKGHVYIAQPPLYRVSYNKQNKYIYSDAQLEEWKNQ---NPNVRYELQRYKGLGEMDD 591

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL ET MD  KRTLL+V IN       +   + + LMG +   R  FI++ A  + ++ 
Sbjct: 592 VQLWETTMDPEKRTLLKVSIND----AANADKTFSLLMGDEVSPRRDFIEKNAKSVKNID 647


>gi|94471626|gb|ABF21079.1| DNA gyrase subunit B [Acholeplasma hippikon]
          Length = 599

 Score =  591 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 253/617 (41%), Positives = 361/617 (58%), Gaps = 20/617 (3%)

Query: 50  RILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTV 109
           +ILEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AGYAN + + +  +  + V
Sbjct: 1   QILEGLEAVRKRPGMYIGSTGERGLHHLVWEIVDNSIDEALAGYANEVNIEILPDNIIKV 60

Query: 110 VDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDEL 169
            DNGRGIPV+ HPK   +  +E ILTTLHAGGKFD  +Y++SGGLHGVG SVVN LS   
Sbjct: 61  RDNGRGIPVDIHPK-TGRPAVETILTTLHAGGKFDKGSYKVSGGLHGVGASVVNGLSLWY 119

Query: 170 HVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLK 229
            V + +   I+ QK+ RGIP   L +         T  TF  DP IF +   ++   L  
Sbjct: 120 LVQIHKDGKIYEQKYERGIPAYDLREIGTTTETG-TETTFLADPLIFTETTVYNYETLRN 178

Query: 230 MTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFT 289
             Q  A+L+  +K      +        P KEEF++ GG+  Y+Q   +++S I  +   
Sbjct: 179 RVQQLAFLNKGIKLTLEDKRIEH-----PMKEEFHYEGGIVEYIQHLNQSKSKIHQDAIY 233

Query: 290 GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
              E+ G    TVE A+ + +   P I S+ N I T EGG HE G ++ALTR I KYA+ 
Sbjct: 234 IDKEQDGV---TVEIALQYVDTYTPNIYSFTNNINTTEGGMHEDGFKLALTRVISKYADD 290

Query: 349 TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
            Q K+  +I  +D       I+SV   EP+F GQTKTKL + + +        +  + +L
Sbjct: 291 NQLKKDDAISGEDTREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAIASQITSEALERFL 350

Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELF 467
           ++NP +A  ++E VI  +  R+  RK +E+ R+ + +  L    KLADC       +E++
Sbjct: 351 LENPNQAKLIVEKVISATRARVAARKAKELARRKSPLDALGFASKLADCRSKDPEKSEIY 410

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           IVEGDSAGGSAKQ R+   QA++PLRGK+LNV     +K+ NN++I++L+QA G     +
Sbjct: 411 IVEGDSAGGSAKQGRDSEFQAIMPLRGKVLNVEKVRFDKMLNNKEIVNLIQAFGTGIGDE 470

Query: 528 YREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTK 587
           +    LRY K++IMTDADVDGAHI +LLLTF ++    LIE  +++   PPL++++ G  
Sbjct: 471 FDINKLRYHKIVIMTDADVDGAHIRTLLLTFLFRHFKPLIEHGYVYAAQPPLYKVSYGKN 530

Query: 588 SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINK 647
             YA+ +E    IL   +    GK  I R+KGLGEM   QL ET MD   RTLL++++  
Sbjct: 531 IQYAYSDEQLNTILASIE----GKPSIQRYKGLGEMNYEQLWETTMDPAARTLLQIKLED 586

Query: 648 DLNSLKDTQDSINKLMG 664
            +    +     + LMG
Sbjct: 587 AI----EADQVFSMLMG 599


>gi|326778153|ref|ZP_08237418.1| DNA gyrase, B subunit [Streptomyces cf. griseus XylebKG-1]
 gi|326658486|gb|EGE43332.1| DNA gyrase, B subunit [Streptomyces cf. griseus XylebKG-1]
          Length = 689

 Score =  591 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 250/686 (36%), Positives = 371/686 (54%), Gaps = 28/686 (4%)

Query: 21  EKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSE 80
                  E   S A  +  A+ +YDAS+I +LEGL+ VR RPGMYIG T E+ LHHL  E
Sbjct: 10  ADSGNPNENIPSTAGEHGEAAASYDASAITVLEGLDAVRKRPGMYIGSTGERGLHHLVQE 69

Query: 81  VIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140
           V+DN++DE +AG+A+ I+V++  +G + V+DNGRGIPV   P    K  +E++LT LHAG
Sbjct: 70  VVDNSVDEAMAGHADTIDVTILADGGVRVIDNGRGIPVGIVP-SEGKPAVEVVLTVLHAG 128

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKF    Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL + E   
Sbjct: 129 GKFGGGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGHRWTQDYKLGVPTAPLAQHEATE 188

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE------- 253
              GT +TF  D  IF     +    L +  Q  A+L+  +    + ++E A+       
Sbjct: 189 E-TGTTVTFWADGDIFET-TEYSFETLSRRFQEMAFLNKGLTLKLTDERESAKATAGADS 246

Query: 254 -------KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
                  +        +++  G+  +++     +  +  +       +      +VE A+
Sbjct: 247 VDAAEPSEEETARSVTYHYENGIVDFVKYLNSRKGDVIHQSVIDIEAEDKDRLLSVEIAM 306

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLM 363
            W  +    + S+ N I T EGGTHE G R ALT  + +YA   +    +  ++  +D+ 
Sbjct: 307 QWNTQYTEGVYSFANAIHTHEGGTHEEGFRAALTSLVNRYARDKKLLRDKDDNLTGEDVR 366

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                I+SV + EP+F GQTKTKL + +A+  V+  + +    +  +NP EA  ++   I
Sbjct: 367 EGLTAIISVKLGEPQFEGQTKTKLGNTEAKTFVQKVVHEQLTDWFDRNPNEAADIIRKGI 426

Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
             S  R+  RK R++ R+   +    LPGKL+DC  N     E+FIVEGDSAGGSAK  R
Sbjct: 427 AASTARVAARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGR 486

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           N   QA+LP+RGKILNV  A  +KI  N ++  L+ A G      +  E LRY K+I+M 
Sbjct: 487 NPMYQAILPIRGKILNVEKARVDKILQNTEVQALISAFGTGVHEDFDIEKLRYHKIILMA 546

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKIL 601
           DADVDG HI +LLLTF ++ M  L+E  H++L  PPL++I  G     YA+ +  +  ++
Sbjct: 547 DADVDGQHINTLLLTFLFRFMRPLVEAGHVYLSRPPLYKIKWGRDDFEYAYSDRERDALV 606

Query: 602 EEFKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
              K++GK   +  I RFKGLGEM A +L+ T MD + R L +V ++          D  
Sbjct: 607 ALGKQNGKRIKEDSIQRFKGLGEMNAEELRVTTMDVDHRVLGQVTLDD----AAQADDLF 662

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
           + LMG   + R  FIQ  A  +  + 
Sbjct: 663 SVLMGEDVEARRSFIQRNAKDVRFLD 688


>gi|305681577|ref|ZP_07404383.1| DNA gyrase, B subunit [Corynebacterium matruchotii ATCC 14266]
 gi|305658737|gb|EFM48238.1| DNA gyrase, B subunit [Corynebacterium matruchotii ATCC 14266]
          Length = 673

 Score =  591 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 258/683 (37%), Positives = 378/683 (55%), Gaps = 49/683 (7%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +A   Y ASSI ILEGLE VR RPGMYIG T+E+ LHHL  EV+DN++DE +AGYA+ +E
Sbjct: 3   TAEHEYGASSITILEGLEAVRKRPGMYIGSTNERGLHHLVWEVVDNSVDEAMAGYADKVE 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +G + V+DNGRGIPVE HP      T+++++T LHAGGKFD+ +Y +SGGLHGVG
Sbjct: 63  VTILADGGIEVIDNGRGIPVEMHP--SGAPTVQVVMTQLHAGGKFDSESYAVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           ISVVNALS  +   + R    + Q F+  IP              GT + F PDP++F  
Sbjct: 121 ISVVNALSTRVEADIKRDGKHWYQNFTNAIPEEL--VAGGPAEGTGTTVRFWPDPEVFET 178

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK------------------------ 254
              F    + +  Q  A+L+  +    +  +   E+                        
Sbjct: 179 TV-FSFELIARRLQEMAFLNKGLTITLTDKRASEEEIELETLAEEIAEGDPETAVEAAEE 237

Query: 255 ---YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
                  +K+ FY+P GL+ Y++   ++++ I   I + + + +      VE A+ W   
Sbjct: 238 KVVKKKEKKKTFYYPNGLQDYVEHLNKSKTAIHPTIISLEVKGEN---LEVEVAMQWNSG 294

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVG 368
               + ++ NTI T EGGTHE G R ALT  + KYA   +   ++  ++  DD       
Sbjct: 295 YAQSVHTFANTINTIEGGTHEEGFRAALTSLMNKYAREHKLLKEKEQNLTGDDCREGLAA 354

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           ++SV + EP+F GQTKTKL + + +  V+ A+ +    +L  NP EA  ++   +  +  
Sbjct: 355 VISVRVGEPQFEGQTKTKLGNSEVRGFVQKAINEHVSDWLDANPAEAKVIINKAVSSAHA 414

Query: 429 RLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
           R+  RK RE+  RK+A     LPGKLADC       +EL+IVEGDSAGGSAK  R+   Q
Sbjct: 415 RVAARKAREMVRRKSATDLGGLPGKLADCRSKDPAKSELYIVEGDSAGGSAKGGRDSMYQ 474

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVD 547
           A+LPLRGKILNV  A  +K+  N ++  ++ ALG     ++  + LRY K+++M DADVD
Sbjct: 475 AILPLRGKILNVEKARLDKVLKNNEVQAIITALGTGIHDEFDIQKLRYGKIVLMADADVD 534

Query: 548 GAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKK 606
           G HIA+LLLT  ++ M  LIE+ H+FL  PPL+++        +A+ +  + ++L E   
Sbjct: 535 GQHIATLLLTLLFRFMPQLIEEGHVFLAQPPLYKLKWAKGDPGFAYSDNQRDELLAEGLA 594

Query: 607 HGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKL 662
            G+ KI     I R+KGLGEM AS+L ET +D   R L RV    D+N  +   +  + L
Sbjct: 595 AGR-KINKDDGIQRYKGLGEMNASELWETTLDPQVRILRRV----DMNDAQLADELFSIL 649

Query: 663 MGTKADERFKFIQERASFIDDVG 685
           MG     R  FI  +A  +  + 
Sbjct: 650 MGDDVAARRSFITRKAKDVRFLD 672


>gi|120401034|ref|YP_950863.1| DNA gyrase subunit B [Mycobacterium vanbaalenii PYR-1]
 gi|119953852|gb|ABM10857.1| DNA gyrase subunit B [Mycobacterium vanbaalenii PYR-1]
          Length = 675

 Score =  591 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 240/685 (35%), Positives = 364/685 (53%), Gaps = 45/685 (6%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A   ++A   Y A SI++LEGLE VR RPGMYIG T E+ LHHL  EV+DNA+DE +AG+
Sbjct: 2   AAQKKNAPAEYGADSIKVLEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGF 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A  ++V +  +G + V D+GRGIPV  H       T+++++T LHAGGKF+   Y++SGG
Sbjct: 62  ATKVDVRILEDGGVQVTDDGRGIPVAMH--STGIPTVDVVMTVLHAGGKFEEGAYQVSGG 119

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS  L   + +    + Q + R +P +   K+ +     GT I F  DP
Sbjct: 120 LHGVGVSVVNALSTRLEADIRKDGYEWHQTYDRSVPGTL--KQGEKSKDTGTTIRFWADP 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK------------------------ 249
            IF     +D   + +  Q  A+L+  +    + ++                        
Sbjct: 178 DIFETTN-YDFETIARRLQEMAFLNKGLTIELTDERVTPADVVDDVVSDHAEAPKSAEEK 236

Query: 250 -EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
              A      +   F++PGGL  +++     ++ I   I     + +G     VE A+ W
Sbjct: 237 AAEAAAPQKVKHRVFHYPGGLVDFVKHINRTKTPIQPSIIDFDGKGEGH---EVEIAMQW 293

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMIS 365
                  + ++ NTI T EGGTHE G R ALT  + KY   +     +  ++  DD+   
Sbjct: 294 NAGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLLKDKDPNLTGDDIREG 353

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP EA  ++   +  
Sbjct: 354 LAAVISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEQLSHWFEANPAEAKTVVNKAVSS 413

Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGGSAK  R+ 
Sbjct: 414 AQARMAARKARELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKSGRDS 473

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY K+++M DA
Sbjct: 474 MFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDISKLRYHKIVLMADA 533

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603
           DVDG HI++LLLT  ++ M  L+E  H+FL  PPL+++        +A+ +  +  +LE 
Sbjct: 534 DVDGQHISTLLLTLLFRFMKPLVENGHIFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEA 593

Query: 604 FKKHGKG---KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660
            +  GK    +  I R+KGLGEM A +L ET MD + R L +V ++          +  +
Sbjct: 594 GRAAGKRINVEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELFS 649

Query: 661 KLMGTKADERFKFIQERASFIDDVG 685
            LMG   + R  FI   A  +  + 
Sbjct: 650 ILMGEDVEARRSFITRNAKDVRFLD 674


>gi|103486580|ref|YP_616141.1| DNA topoisomerase IV subunit B [Sphingopyxis alaskensis RB2256]
 gi|98976657|gb|ABF52808.1| DNA topoisomerase IV, B subunit [Sphingopyxis alaskensis RB2256]
          Length = 659

 Score =  591 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 342/656 (52%), Positives = 452/656 (68%), Gaps = 9/656 (1%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
           A   ASD+Y+AS I +LEGLEPVR RPGMYIGGTDE+ALHHL +EVIDN+MDE +AG+A 
Sbjct: 8   AAIPASDSYNASQIEVLEGLEPVRRRPGMYIGGTDERALHHLAAEVIDNSMDEAVAGHAT 67

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            IEV+LD    LT+VDNGRG+PV+ HPKFP KS LE+I+T LH+GGKF+   Y  SGGLH
Sbjct: 68  RIEVTLDVGNRLTIVDNGRGMPVDPHPKFPGKSALEVIMTMLHSGGKFEGKAYATSGGLH 127

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS E  + VAR   ++ Q+F+RG PL PLE+     N+RGT ++F PDP+I
Sbjct: 128 GVGVSVVNALSVETEIEVARAKQLYRQRFARGAPLGPLEELGATPNRRGTSVSFIPDPEI 187

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           FG+   F   RL ++ +SKAYL   V+  W C   +      P +  F FPGGL  +L+ 
Sbjct: 188 FGEHGRFKPQRLYRLARSKAYLFAGVEIRWKCAPALIGDD-TPSEAVFQFPGGLADHLKE 246

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGL 334
           ++  R   +++ F G+ +  G  +G  EWAIAW    +   + YCNTI T  GGTHE+GL
Sbjct: 247 QIGARECATADPFVGRQDFPGD-QGRAEWAIAWPLWSDGSYSWYCNTIPTPAGGTHEAGL 305

Query: 335 RVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           R ALT+G++ + EL   K+A  I ++D+   +  +LSVFIR+P+F  QTK +L S +A R
Sbjct: 306 RAALTKGLRAFGELIGQKKAAQITAEDVFNGSEMMLSVFIRDPQFQSQTKDRLSSPEAAR 365

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLPGK 452
             ENA+RD FDH+L  N      LL  V++R +ERL+R+ +REV RKTA   RKLRLPGK
Sbjct: 366 LTENAVRDHFDHFLSDNMDRGRALLGLVLDRMDERLKRKAEREVKRKTATSGRKLRLPGK 425

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L DC+ +   GTELFIVEGDSAGGSAKQAR+R  QA+LP+RGKILNVASA ++KIR NQ+
Sbjct: 426 LTDCANDGPEGTELFIVEGDSAGGSAKQARDRKTQAILPIRGKILNVASASADKIRANQE 485

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I DL  ALGC  R     + LRYEK++IMTDADVDGAHIA+LL+TFF+QEM D++   H+
Sbjct: 486 IADLALALGCGMRKDCDADRLRYEKIVIMTDADVDGAHIATLLMTFFFQEMPDIVRNGHV 545

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           +L  PPL+R+T G  S YA D+ H+ ++     K    K+E+ RFKGLGEM  +QLKET 
Sbjct: 546 YLAQPPLYRLTAGGLSAYARDDAHRAELEATLFK--GKKVEVGRFKGLGEMNPNQLKETT 603

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD--VGT 686
           MD   R+LLRV + ++       +D +++LMG   + RF+FIQ  A+ +D+  +  
Sbjct: 604 MDPATRSLLRVTLPQEYEERHLVKDLVDRLMGRNPEHRFQFIQANAASLDEAAIDA 659


>gi|290894160|ref|ZP_06557131.1| DNA topoisomerase IV subunit B [Listeria monocytogenes FSL J2-071]
 gi|290556290|gb|EFD89833.1| DNA topoisomerase IV subunit B [Listeria monocytogenes FSL J2-071]
          Length = 655

 Score =  591 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 240/652 (36%), Positives = 359/652 (55%), Gaps = 35/652 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + Y+  SI++LEGLE VR RP MYIG TD + LHHL  E++DN++DE +AG+   I V+L
Sbjct: 4   NEYNDDSIQVLEGLEAVRKRPAMYIGSTDVRGLHHLVYEIVDNSVDETLAGFGKKIVVTL 63

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGVGIS 160
             +G ++V D GRG+PV  H     KST+E+ILT LHAGGKF     Y+ SGGLHGVG S
Sbjct: 64  HVDGSVSVSDEGRGMPVGMHK--TGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGVGSS 121

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ L VT+ R    + QKF  G       KK       GT I F+PDP IF    
Sbjct: 122 VVNALSEWLVVTINRDGATYQQKFKDGGKPDGTLKKIGKSKATGTTIRFKPDPAIFPTT- 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F+   L +  +  A+L   +      ++       +   E F+F  G+K +++   E +
Sbjct: 181 SFNYETLSERLRESAFLLKGMLIELIDER-------VGMAEAFHFEEGVKNFVEYINEGK 233

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
            ++     + + E        VE A  + +     I S+ N + T   G+HESG++ A+T
Sbjct: 234 DVLHPVA-SFEGENATI---EVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMT 289

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395
           R    YA       ++  ++   D+      +LS+ + E   +F GQTK KL + +A++ 
Sbjct: 290 RIFNDYARRVNLVKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQA 349

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGK 452
           V+  + +   ++L +NP  ++ L++  ++  E R   RK RE  R    +K     L GK
Sbjct: 350 VDAVVAEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGK 409

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L        +  EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I  N++
Sbjct: 410 LTPAQSRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEE 469

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++  +G    +++  ED  Y+KV+IMTDAD DGAHI  LLLTFFY+ M  L+E   +
Sbjct: 470 ISTIIHTVGAGVGTEFDVEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKV 529

Query: 573 FLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           F+  PPL+++++G   K V  YA  +E     +++  K       I R+KGLGEM A QL
Sbjct: 530 FIALPPLYKVSRGSGKKEVIEYAWTDEELDSAIQKIGK----GYMIQRYKGLGEMNADQL 585

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET M+ + RTL+RV ++         +  +  LMG K + R ++I++   F
Sbjct: 586 WETTMNPDTRTLIRVRVDD----SARAERRVATLMGDKVEPRRQWIEKHVEF 633


>gi|145221416|ref|YP_001132094.1| DNA gyrase subunit B [Mycobacterium gilvum PYR-GCK]
 gi|145213902|gb|ABP43306.1| DNA gyrase subunit B [Mycobacterium gilvum PYR-GCK]
          Length = 675

 Score =  591 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 240/685 (35%), Positives = 368/685 (53%), Gaps = 45/685 (6%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A   ++A   Y A SI++LEGLE VR RPGMYIG T E+ LHHL  EV+DNA+DE +AG+
Sbjct: 2   AAQKKNAPSEYGADSIKVLEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGF 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A  ++V +  +G + V D+GRGIPV  H       T+++++T LHAGGKF+   Y++SGG
Sbjct: 62  ATKVDVRILEDGGVQVTDDGRGIPVAMH--STGIPTIDVVMTVLHAGGKFEEGAYQVSGG 119

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS  L   V +    + Q + R +P +  +      +K GT I F  DP
Sbjct: 120 LHGVGVSVVNALSSRLEADVRKDGHEWFQTYDRSVPGTLRK--GDPTDKTGTTIRFWADP 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK------------------- 254
           +IF     +D   + +  Q  A+L+  +    + ++   E+                   
Sbjct: 178 EIFETTN-YDFETIARRLQEMAFLNKGLTIELTDERVAPEEVVDDVVSDHAEAPKSAEEK 236

Query: 255 ------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
                     +   F++PGGL  +++     ++ I   +     + +G     VE A+ W
Sbjct: 237 AAEASAPQKVKHRVFHYPGGLVDFVKHINRTKTAIQPSVIDFDGKGEGH---EVEIAMQW 293

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMIS 365
                  + ++ NTI T EGGTHE G R ALT  + KY   +    ++  ++  DD+   
Sbjct: 294 NAGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDPNLTGDDIREG 353

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              ++SV + +P+F GQTKTKL + + +  V+    +  +H+   NP EA  ++   +  
Sbjct: 354 LAAVISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEQLNHWFESNPAEAKTVINKAVSS 413

Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGGSAK  R+ 
Sbjct: 414 AQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPTKSELYVVEGDSAGGSAKSGRDS 473

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY K+++M DA
Sbjct: 474 MFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDISKLRYHKIVLMADA 533

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603
           DVDG HI++LLLT  ++ M  L+E  H+FL  PPL+++        +A+ +  +  +LE 
Sbjct: 534 DVDGQHISTLLLTLLFRFMKPLVENGHIFLAQPPLYKLKWQRTDPEFAYSDRERDGLLEA 593

Query: 604 FKKHGKG---KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660
            +  GK    +  I R+KGLGEM A +L ET MD + R L +V ++          +  +
Sbjct: 594 GRAAGKRINVEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELFS 649

Query: 661 KLMGTKADERFKFIQERASFIDDVG 685
            LMG   + R  FI   A  +  + 
Sbjct: 650 ILMGEDVEARRSFITRNAKDVRFLD 674


>gi|182437498|ref|YP_001825217.1| DNA gyrase subunit B [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178466014|dbj|BAG20534.1| putative DNA gyrase subunit B [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 681

 Score =  591 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 250/687 (36%), Positives = 371/687 (54%), Gaps = 28/687 (4%)

Query: 20  SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79
                   E   S A  +  A+ +YDAS+I +LEGL+ VR RPGMYIG T E+ LHHL  
Sbjct: 1   MADSGNPNENIPSTAGEHGEAAASYDASAITVLEGLDAVRKRPGMYIGSTGERGLHHLVQ 60

Query: 80  EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139
           EV+DN++DE +AG+A+ I+V++  +G + V+DNGRGIPV   P    K  +E++LT LHA
Sbjct: 61  EVVDNSVDEAMAGHADTIDVTILADGGVRVIDNGRGIPVGIVP-SEGKPAVEVVLTVLHA 119

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKF    Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL + E  
Sbjct: 120 GGKFGGGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGHRWTQDYKLGVPTAPLAQHEAT 179

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE------ 253
               GT +TF  D  IF     +    L +  Q  A+L+  +    + ++E A+      
Sbjct: 180 EE-TGTTVTFWADGDIFET-TEYSFETLSRRFQEMAFLNKGLTLKLTDERESAKATAGAD 237

Query: 254 --------KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
                   +        +++  G+  +++     +  +  +       +      +VE A
Sbjct: 238 SVDAAEPSEEETARSVTYHYENGIVDFVKYLNSRKGDVIHQSVIDIEAEDKDRLLSVEIA 297

Query: 306 IAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDL 362
           + W  +    + S+ N I T EGGTHE G R ALT  + +YA   +    +  ++  +D+
Sbjct: 298 MQWNTQYTEGVYSFANAIHTHEGGTHEEGFRAALTSLVNRYARDKKLLRDKDDNLTGEDV 357

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
                 I+SV + EP+F GQTKTKL + +A+  V+  + +    +  +NP EA  ++   
Sbjct: 358 REGLTAIISVKLGEPQFEGQTKTKLGNTEAKTFVQKVVHEQLTDWFDRNPNEAADIIRKG 417

Query: 423 IERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
           I  S  R+  RK R++ R+   +    LPGKL+DC  N     E+FIVEGDSAGGSAK  
Sbjct: 418 IAASTARVAARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSG 477

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541
           RN   QA+LP+RGKILNV  A  +KI  N ++  L+ A G      +  E LRY K+I+M
Sbjct: 478 RNPMYQAILPIRGKILNVEKARVDKILQNTEVQALISAFGTGVHEDFDIEKLRYHKIILM 537

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKI 600
            DADVDG HI +LLLTF ++ M  L+E  H++L  PPL++I  G     YA+ +  +  +
Sbjct: 538 ADADVDGQHINTLLLTFLFRFMRPLVEAGHVYLSRPPLYKIKWGRDDFEYAYSDRERDAL 597

Query: 601 LEEFKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           +   K++GK   +  I RFKGLGEM A +L+ T MD + R L +V ++          D 
Sbjct: 598 VALGKQNGKRIKEDSIQRFKGLGEMNAEELRVTTMDVDHRVLGQVTLDD----AAQADDL 653

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            + LMG   + R  FIQ  A  +  + 
Sbjct: 654 FSVLMGEDVEARRSFIQRNAKDVRFLD 680


>gi|314933532|ref|ZP_07840897.1| DNA topoisomerase IV, B subunit [Staphylococcus caprae C87]
 gi|313653682|gb|EFS17439.1| DNA topoisomerase IV, B subunit [Staphylococcus caprae C87]
          Length = 664

 Score =  591 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 235/654 (35%), Positives = 357/654 (54%), Gaps = 31/654 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  + Y   SI++LEGLE VR RPGMYIG TD++ LHHL  EV+DN++DEV+ GY + I 
Sbjct: 2   NKQNTYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEVVDNSVDEVLNGYGDEIT 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+++ +  +++ DNGRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG
Sbjct: 62  VTINQDDSISIEDNGRGMPTGIH--ASGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS+ L V + R   I++Q F  G   +    K+    K GT++TF+PDP+IF  
Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYTQSFKDGGIPATGLNKKGKTKKTGTKVTFKPDPEIFKA 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L +  Q  A+L   +K   +  +   E+      E +++  G+K ++    E
Sbjct: 180 TTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERE-----EVYHYEEGIKEFVSYVNE 234

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            + ++              +   VE A  + ++    I S+ N + T +GGTHE G + A
Sbjct: 235 GKEVLHDVTTFSGL----ANNIEVEVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 290

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
           +TR    YA        +  ++  +D+      I+SV I E   +F GQTK+KL + +A+
Sbjct: 291 MTRVFNDYARRINELKDKDKNLDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTSEAR 350

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---P 450
             V++ + +    YL +    +  L++  I+  + R   RK RE  R     K +     
Sbjct: 351 SAVDSVVSEKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKHKDTLLS 410

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  E I  N
Sbjct: 411 GKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 470

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    + ++ ED  Y +VIIMTDAD DGAHI  LLLTFF++ M  L++  
Sbjct: 471 EEINTIIHTIGAGVGNDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 530

Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +F+  PPL+++ +G     K  YA  ++  +K+ ++  K       + R+KGLGEM   
Sbjct: 531 RVFIALPPLYKLEKGKGKTKKVEYAWTDDELEKLQKQLGK----GFTLQRYKGLGEMNPE 586

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET M+   RTL+RV++  ++ S K     +  LMG K   R ++I+    F
Sbjct: 587 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVAPRREWIESHVEF 636


>gi|238855510|ref|ZP_04645815.1| DNA gyrase, B subunit [Lactobacillus jensenii 269-3]
 gi|260665214|ref|ZP_05866063.1| DNA gyrase, B subunit [Lactobacillus jensenii SJ-7A-US]
 gi|282931536|ref|ZP_06337035.1| DNA gyrase, B subunit [Lactobacillus jensenii 208-1]
 gi|313472767|ref|ZP_07813255.1| DNA gyrase, B subunit [Lactobacillus jensenii 1153]
 gi|238831876|gb|EEQ24208.1| DNA gyrase, B subunit [Lactobacillus jensenii 269-3]
 gi|260560951|gb|EEX26926.1| DNA gyrase, B subunit [Lactobacillus jensenii SJ-7A-US]
 gi|281304343|gb|EFA96446.1| DNA gyrase, B subunit [Lactobacillus jensenii 208-1]
 gi|313448866|gb|EEQ68253.2| DNA gyrase, B subunit [Lactobacillus jensenii 1153]
          Length = 651

 Score =  591 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 252/654 (38%), Positives = 368/654 (56%), Gaps = 20/654 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +  +D Y+AS I++L GLE VR RPGMYIG T  + LHHL  E+IDN +DE +AG+A  I
Sbjct: 13  EKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNGIDECLAGFATKI 72

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           EV+++ +G +TV D+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGV
Sbjct: 73  EVTVEEDGSVTVQDDGRGIPVDIQKK-TGRPAVETVYTVLHAGGKFGGGGYKVSGGLHGV 131

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIF 216
           G SVVNALS ++ VTV R    +   F  G     L++   V  ++ GT + F PDP IF
Sbjct: 132 GASVVNALSTKVEVTVMRDGKKYFIDFDHGRVKHELKEIGTVDPSQHGTIVHFYPDPDIF 191

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   FD   L K  Q  A+L+  +K  ++  ++ +      E + +++ GG+K Y+   
Sbjct: 192 TETIVFDDKILKKRIQELAFLNKGLKLTFTDKRKNS-----AETDVYHYEGGIKEYVAFL 246

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            E    +       + +  G     VE A+ +       + ++ N I T EGG HE+G +
Sbjct: 247 DEKEEKLFDTPVYVEGDYDGI---NVEVALQYTTGYKTTMMTFANNIHTYEGGMHEAGFK 303

Query: 336 VALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR I  YA   +  +    ++  +D+      ++S+    P+F GQTKTKL + DA+
Sbjct: 304 TALTRVINDYARKAKIFKDSDTNLSGEDIREGMTAVISIKHPNPQFEGQTKTKLGNSDAR 363

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
             V+ A  + F  +L++NP    K++E      + R+  ++ RE   +K+ +    LPGK
Sbjct: 364 AAVDKAFSEAFSKFLLENPSVGRKIVEKGQLAEKARIAAKRAREVTRKKSGLEIANLPGK 423

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LAD + N    +ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I  NQ+
Sbjct: 424 LADNTSNDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQE 483

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  L  ALG    + +  +  RY K+IIMTDADVDGAHI +LLLT FY+ M  +I+  ++
Sbjct: 484 IRTLFTALGTGFGADFDVKKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMKPMIKAGYV 543

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL+++ QG    Y   +E     L   +     K  + R+KGLGEM A QL ET 
Sbjct: 544 YIARPPLYQVKQGKIIKYLDSDEELHDYLGSLQPS--PKPTVQRYKGLGEMSADQLWETT 601

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           MD   R L RV    D    +D       LMG +   R  FI + A +++++  
Sbjct: 602 MDPENRRLDRV----DPKYAEDADAVFEMLMGNEVGPRRDFITKNAKYVENLDA 651


>gi|15607147|ref|NP_214519.1| DNA gyrase subunit B [Mycobacterium tuberculosis H37Rv]
 gi|148659762|ref|YP_001281285.1| DNA gyrase subunit B [Mycobacterium tuberculosis H37Ra]
 gi|215405989|ref|ZP_03418170.1| DNA gyrase subunit B [Mycobacterium tuberculosis 02_1987]
 gi|218755721|ref|ZP_03534517.1| DNA gyrase subunit B [Mycobacterium tuberculosis GM 1503]
 gi|253796920|ref|YP_003029921.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis KZN 1435]
 gi|289552255|ref|ZP_06441465.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis KZN 605]
 gi|289747775|ref|ZP_06507153.1| DNA gyrase subunit B [Mycobacterium tuberculosis 02_1987]
 gi|289760102|ref|ZP_06519480.1| subunit B gyrB [Mycobacterium tuberculosis T85]
 gi|289764120|ref|ZP_06523498.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis GM 1503]
 gi|294995613|ref|ZP_06801304.1| DNA gyrase subunit B [Mycobacterium tuberculosis 210]
 gi|298527403|ref|ZP_07014812.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis 94_M4241A]
 gi|308373866|ref|ZP_07433901.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu006]
 gi|474435|emb|CAA55486.1| DNA gyrase subunit B [Mycobacterium tuberculosis H37Ra]
 gi|1552558|emb|CAB02426.1| DNA GYRASE (SUBUNIT B) GYRB (DNA TOPOISOMERASE (ATP-HYDROLYSING))
           (DNA TOPOISOMERASE II) (TYPE II DNA TOPOISOMERASE)
           [Mycobacterium tuberculosis H37Rv]
 gi|148503914|gb|ABQ71723.1| DNA gyrase subunit B [Mycobacterium tuberculosis H37Ra]
 gi|253318423|gb|ACT23026.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis KZN 1435]
 gi|289436887|gb|EFD19380.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis KZN 605]
 gi|289688303|gb|EFD55791.1| DNA gyrase subunit B [Mycobacterium tuberculosis 02_1987]
 gi|289711626|gb|EFD75642.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis GM 1503]
 gi|289715666|gb|EFD79678.1| subunit B gyrB [Mycobacterium tuberculosis T85]
 gi|298497197|gb|EFI32491.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis 94_M4241A]
 gi|308343895|gb|EFP32746.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu006]
 gi|326905764|gb|EGE52697.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis W-148]
 gi|328456711|gb|AEB02134.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis KZN 4207]
          Length = 714

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 253/686 (36%), Positives = 368/686 (53%), Gaps = 47/686 (6%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A   + A D Y A+SI ILEGLE VR RPGMYIG T E+ LHHL  EV+DNA+DE +AGY
Sbjct: 41  AAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGY 100

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A  + V L  +G + V D+GRGIPV  H       T+++++T LHAGGKFD+  Y ISGG
Sbjct: 101 ATTVNVVLLEDGGVEVADDGRGIPVATH--ASGIPTVDVVMTQLHAGGKFDSDAYAISGG 158

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS  L V + R    +SQ + +  PL    K+     K G+ + F  DP
Sbjct: 159 LHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLGL--KQGAPTKKTGSTVRFWADP 216

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY------------------ 255
            +F     +D   + +  Q  A+L+  +    + ++   ++                   
Sbjct: 217 AVFET-TEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASER 275

Query: 256 -------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
                     +   F++PGGL  +++     ++ I S I     +  G     VE A+ W
Sbjct: 276 AAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGH---EVEIAMQW 332

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
                  + ++ NTI T EGGTHE G R ALT  + KYA+  +    +  ++  DD+   
Sbjct: 333 NAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREG 392

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  ++   +  
Sbjct: 393 LAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSS 452

Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGGSAK  R+ 
Sbjct: 453 AQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDS 512

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY K+++M DA
Sbjct: 513 MFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRYHKIVLMADA 572

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603
           DVDG HI++LLLT  ++ M  LIE  H+FL  PPL+++        +A+ +  +  +LE 
Sbjct: 573 DVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEA 632

Query: 604 FKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
             K GK KI     I R+KGLGEM A +L ET MD + R L +V ++          +  
Sbjct: 633 GLKAGK-KINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELF 687

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
           + LMG   D R  FI   A  +  + 
Sbjct: 688 SILMGEDVDARRSFITRNAKDVRFLD 713


>gi|31791182|ref|NP_853675.1| DNA gyrase subunit B [Mycobacterium bovis AF2122/97]
 gi|121635888|ref|YP_976111.1| DNA gyrase subunit B [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|121635915|ref|YP_976138.1| DNA gyrase subunit B [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224988388|ref|YP_002643055.1| DNA gyrase subunit B [Mycobacterium bovis BCG str. Tokyo 172]
 gi|260184858|ref|ZP_05762332.1| DNA gyrase subunit B [Mycobacterium tuberculosis CPHL_A]
 gi|289445530|ref|ZP_06435274.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis CPHL_A]
 gi|289572581|ref|ZP_06452808.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis K85]
 gi|31616767|emb|CAD92867.1| DNA GYRASE (SUBUNIT B) GYRB (DNA TOPOISOMERASE (ATP-HYDROLYSING))
           (DNA TOPOISOMERASE II) (TYPE II DNA TOPOISOMERASE)
           [Mycobacterium bovis AF2122/97]
 gi|121491535|emb|CAL69989.1| DNA gyrase subunit B gyrB [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|121491562|emb|CAL70019.1| Dna gyrase subunit B gyrB (DNA topoisomerase) [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|224771501|dbj|BAH24307.1| DNA gyrase subunit B [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289418488|gb|EFD15689.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis CPHL_A]
 gi|289537012|gb|EFD41590.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis K85]
          Length = 714

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 252/686 (36%), Positives = 368/686 (53%), Gaps = 47/686 (6%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A   + A D Y A+SI ILEGLE VR RPGMYIG T E+ LHHL  EV+DNA+DE +AGY
Sbjct: 41  AAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGY 100

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A  + V L  +G + V D+GRGIPV  H       T+++++T LHAGGKFD+  Y ISGG
Sbjct: 101 ATTVNVVLLEDGGVEVADDGRGIPVATH--ASGIPTVDVVMTQLHAGGKFDSDAYAISGG 158

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS  L V + R    +SQ + +  PL    K+     K G+ + F  DP
Sbjct: 159 LHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLGL--KQGAPTKKTGSTVRFWADP 216

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY------------------ 255
            +F     +D   + +  Q  A+L+  +    + ++   ++                   
Sbjct: 217 AVFET-TEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASER 275

Query: 256 -------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
                     +   F++PGGL  +++     ++ I S I     +  G     VE A+ W
Sbjct: 276 AAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGH---EVEIAMQW 332

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
                  + ++ NTI T EGGTHE G R ALT  + KYA+  +    +  ++  DD+   
Sbjct: 333 NAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREG 392

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP ++  ++   +  
Sbjct: 393 LAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDSKVVVNKAVSS 452

Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGGSAK  R+ 
Sbjct: 453 AQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDS 512

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY K+++M DA
Sbjct: 513 MFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRYHKIVLMADA 572

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603
           DVDG HI++LLLT  ++ M  LIE  H+FL  PPL+++        +A+ +  +  +LE 
Sbjct: 573 DVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEA 632

Query: 604 FKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
             K GK KI     I R+KGLGEM A +L ET MD + R L +V ++          +  
Sbjct: 633 GLKAGK-KINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELF 687

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
           + LMG   D R  FI   A  +  + 
Sbjct: 688 SILMGEDVDARRSFITRNAKDVRFLD 713


>gi|315441702|ref|YP_004074581.1| DNA gyrase subunit B [Mycobacterium sp. Spyr1]
 gi|315260005|gb|ADT96746.1| DNA gyrase subunit B [Mycobacterium sp. Spyr1]
          Length = 675

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 240/685 (35%), Positives = 368/685 (53%), Gaps = 45/685 (6%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A   ++A   Y A SI++LEGLE VR RPGMYIG T E+ LHHL  EV+DNA+DE +AG+
Sbjct: 2   AAQKKNAPSEYGADSIKVLEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGF 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A  ++V +  +G + V D+GRGIPV  H       T+++++T LHAGGKF+   Y++SGG
Sbjct: 62  ATKVDVRILEDGGVQVTDDGRGIPVSMH--STGIPTIDVVMTVLHAGGKFEEGAYQVSGG 119

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS  L   V +    + Q + R +P +  +      +K GT I F  DP
Sbjct: 120 LHGVGVSVVNALSSRLEADVRKDGHEWFQTYDRSVPGTLRK--GDPTDKTGTTIRFWADP 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK------------------- 254
           +IF     +D   + +  Q  A+L+  +    + ++   E+                   
Sbjct: 178 EIFETTN-YDFETIARRLQEMAFLNKGLTIELTDERVAPEEVVDDVVSDHAEAPKSAEEK 236

Query: 255 ------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
                     +   F++PGGL  +++     ++ I   +     + +G     VE A+ W
Sbjct: 237 AAEASAPQKVKHRVFHYPGGLVDFVKHINRTKTAIQPSVIDFDGKGEGH---EVEIAMQW 293

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMIS 365
                  + ++ NTI T EGGTHE G R ALT  + KY   +    ++  ++  DD+   
Sbjct: 294 NAGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDPNLTGDDIREG 353

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              ++SV + +P+F GQTKTKL + + +  V+    +  +H+   NP EA  ++   +  
Sbjct: 354 LAAVISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEQLNHWFESNPAEAKTVINKAVSS 413

Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGGSAK  R+ 
Sbjct: 414 AQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPTKSELYVVEGDSAGGSAKSGRDS 473

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY K+++M DA
Sbjct: 474 MFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDISKLRYHKIVLMADA 533

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603
           DVDG HI++LLLT  ++ M  L+E  H+FL  PPL+++        +A+ +  +  +LE 
Sbjct: 534 DVDGQHISTLLLTLLFRFMKPLVENGHIFLAQPPLYKLKWQRTDPEFAYSDRERDGLLEA 593

Query: 604 FKKHGKG---KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660
            +  GK    +  I R+KGLGEM A +L ET MD + R L +V ++          +  +
Sbjct: 594 GRAAGKRINVEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELFS 649

Query: 661 KLMGTKADERFKFIQERASFIDDVG 685
            LMG   + R  FI   A  +  + 
Sbjct: 650 ILMGEDVEARRSFITRNAKDVRFLD 674


>gi|256843827|ref|ZP_05549314.1| DNA gyrase, B subunit [Lactobacillus crispatus 125-2-CHN]
 gi|256613732|gb|EEU18934.1| DNA gyrase, B subunit [Lactobacillus crispatus 125-2-CHN]
          Length = 654

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 247/668 (36%), Positives = 365/668 (54%), Gaps = 20/668 (2%)

Query: 24  KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVID 83
             + +         +  +D Y+AS I++L GLE VR RPGMYIG T  + LHHL  E+ID
Sbjct: 2   ADNSKANLEKVKKYEKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEIID 61

Query: 84  NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143
           N++DE +AG+A  IEV+++ +G +TV D+GRGIPV+   K   +  LE + T LHAGGKF
Sbjct: 62  NSIDERLAGFATKIEVTINEDGSVTVQDDGRGIPVDIQEK-TGRPALETVFTVLHAGGKF 120

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NK 202
               Y++SGGLHGVG SVVNALS +L VTV R    +   F  G     +++   V  ++
Sbjct: 121 GGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDGKKYFIDFDHGRVKDEMKQIGTVPLDE 180

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT + F PDP IF +   FD   L       A+L+  +   ++  ++        E + 
Sbjct: 181 HGTIVHFYPDPDIFTETIVFDDKILKNRIHELAFLNKGLTLTFTDKRK-----DTAETDV 235

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           + F GG+K Y+    + + ++  +    ++   G     VE A+ +       + ++ N 
Sbjct: 236 YKFEGGIKEYVAFLNKGQEVLFDDPIYVESTYNGI---DVEVALQYTNGYKTTLMTFANN 292

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I T EGG HE+G + ALTR +  YA  ++    +  ++  +D+      I+SV    P+F
Sbjct: 293 IHTYEGGMHEAGFKTALTRVVNDYAHKSKILKDKDDNLSGEDIREGMTAIVSVKHPSPQF 352

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREV 438
            GQTKTKL + DA+  V+ A  + F  +L++NP    K++E   +        +R +   
Sbjct: 353 EGQTKTKLGNSDARTAVDKAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVT 412

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            +K+ +    LPGKLAD + N    +ELFIVEG+SAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 413 RKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILN 472

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  NQ+I  L  ALG    + +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 473 VEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIRTLLLTL 532

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY  M  +I++ ++++  PPL+++ QG    Y   +E     L   +     K  + R+K
Sbjct: 533 FYNYMRPMIDKGYVYIAKPPLYQVRQGKVVRYLDTDEELHDYLGSLQPS--PKPTVQRYK 590

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           GLGEM   QL ET M+   R L RV         KD       LMG +   R  FIQ+ A
Sbjct: 591 GLGEMDPEQLWETTMNPENRRLDRVSPEY----AKDADAVFELLMGNEVSPRRDFIQKNA 646

Query: 679 SFIDDVGT 686
            +++++  
Sbjct: 647 KYVENLDA 654


>gi|314936492|ref|ZP_07843839.1| DNA topoisomerase IV, B subunit [Staphylococcus hominis subsp.
           hominis C80]
 gi|313655111|gb|EFS18856.1| DNA topoisomerase IV, B subunit [Staphylococcus hominis subsp.
           hominis C80]
          Length = 662

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 236/652 (36%), Positives = 360/652 (55%), Gaps = 31/652 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +++Y   SI++LEGLE VR RPGMYIG TD++ LHHL  E++DN++DEV+ GY N I+V+
Sbjct: 2   TNHYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEIDVT 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  ++V DNGRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG S
Sbjct: 62  INEDNSISVEDNGRGMPTGMH--ASGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGAS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ L V + R   I+ Q F  G   +    K     K GT++TF+PD  IF    
Sbjct: 120 VVNALSEWLEVEIHRDGQIYKQSFKDGGIPTSGLMKAGKTKKTGTKVTFKPDSSIFKATT 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F+   L +  Q  A+L   +K      ++  E+      + +++  G+K ++    E +
Sbjct: 180 SFNFDTLSERLQESAFLLKNLKITLKDLRDGKERE-----DVYHYEEGIKEFVSYINEGK 234

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
            ++  ++ T      G     V+ A  + ++    I S+ N + T +GGTHE G + A+T
Sbjct: 235 EVLH-DVTTFTGAANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMT 290

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395
           R    YA        +  ++  +D+      ++SV I E   +F GQTK+KL + +A+  
Sbjct: 291 RVFNDYARRINELKDKDKNLDGNDIREGLTAVISVRIPEELLQFEGQTKSKLGTSEARSA 350

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGK 452
           V++ + +   +YL +    +  L++  I+  + R   RK RE  R     K     L GK
Sbjct: 351 VDSVVSEKLPYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGK 410

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L           EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  E I  N++
Sbjct: 411 LTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKAKLEDIFKNEE 470

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++  +G    + ++ ED  Y +VIIMTDAD DGAHI  LLLTFF++ M  L++   +
Sbjct: 471 INTIIHTIGAGVGNDFKLEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMRPLVQAGRV 530

Query: 573 FLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           F+  PPL+++ +G     K  YA  ++  +K+ ++  K       + R+KGLGEM   QL
Sbjct: 531 FIALPPLYKLEKGKGKSKKVEYAWTDDELEKLQKQLGK----GFILQRYKGLGEMNPEQL 586

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET M+   RTL+RV+I+ ++ S K     +  LMG K   R ++I+    F
Sbjct: 587 WETTMNPETRTLIRVQIDDEVRSSKR----VTTLMGDKVAPRREWIENHVEF 634


>gi|289550859|ref|YP_003471763.1| Topoisomerase IV subunit B [Staphylococcus lugdunensis HKU09-01]
 gi|315658360|ref|ZP_07911232.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus
           lugdunensis M23590]
 gi|289180391|gb|ADC87636.1| Topoisomerase IV subunit B [Staphylococcus lugdunensis HKU09-01]
 gi|315496689|gb|EFU85012.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus
           lugdunensis M23590]
          Length = 666

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 236/654 (36%), Positives = 356/654 (54%), Gaps = 31/654 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  +NY   SI++LEGLE VR RPGMYIG TD++ LHHL  EV+DN++DEV+ GY + I 
Sbjct: 4   NKKNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEVVDNSVDEVLNGYGDEIN 63

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+++ +  +T+ DNGRG+P   H     K T+++I T LHAGGKF    Y+ SGGLHGVG
Sbjct: 64  VTINKDNSITIEDNGRGMPTGIH--ASGKPTVQVIFTVLHAGGKFGQGGYKTSGGLHGVG 121

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS+ L V + R   I+ Q F  G   +    K     K GT++TF+PDP+IF  
Sbjct: 122 ASVVNALSEWLEVEIHRDGNIYKQSFKNGGLPATGLVKAGKTKKTGTKVTFKPDPEIFKA 181

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L +  Q  A+L   +K   +  +   E+      E +++  G+K ++    E
Sbjct: 182 STTFSFQTLSERLQESAFLLKNLKIKLTDLRSGKERE-----ELYHYEEGIKEFVSYVNE 236

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            + ++             +H   V+ A  + ++    I S+ N + T +GGTHE G + A
Sbjct: 237 GKEVLHDVTMFSGQ----SHGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 292

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
           +TR    YA       ++  +I  +D+      I+SV I E   +F GQTK+KL + +A+
Sbjct: 293 MTRVFNDYARRINELKEKDKNIDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTTEAR 352

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450
             V++ + +    YL +    +  L++  I+  + R   RK R+  R     K     L 
Sbjct: 353 SAVDSVVAEKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKARDDARSGKKNKRKDTLLS 412

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  E I  N
Sbjct: 413 GKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 472

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    + ++ ED  Y +VIIMTDAD DGAHI  LLLTFF++ M  L++  
Sbjct: 473 EEINTIIHTIGAGVGNDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 532

Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +F+  PPL+++ +G     +  YA  ++   K+ +   K       + R+KGLGEM   
Sbjct: 533 RVFIALPPLYKLEKGKGKAKQVEYAWTDDELDKLQQSLGK----GFTLQRYKGLGEMNPE 588

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET M+ + RTL+RV++  ++ S K     +  LMG K   R ++I+    F
Sbjct: 589 QLWETTMNPDTRTLIRVQVEDEVRSSKR----VTTLMGDKVAPRREWIERHVEF 638


>gi|228476082|ref|ZP_04060790.1| DNA topoisomerase IV, B subunit [Staphylococcus hominis SK119]
 gi|228269905|gb|EEK11385.1| DNA topoisomerase IV, B subunit [Staphylococcus hominis SK119]
          Length = 666

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 236/656 (35%), Positives = 360/656 (54%), Gaps = 31/656 (4%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
               +++Y   SI++LEGLE VR RPGMYIG TD++ LHHL  E++DN++DEV+ GY N 
Sbjct: 2   ATKMTNHYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNE 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+V+++ +  ++V DNGRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHG
Sbjct: 62  IDVTINEDNSISVEDNGRGMPTGMH--ASGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHG 119

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS+ L V + R   I+ Q F  G   +    K     K GT++TF+PD  IF
Sbjct: 120 VGASVVNALSEWLEVEIHRDGQIYKQSFKDGGIPTSGLMKAGKTKKTGTKVTFKPDSSIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                F+   L +  Q  A+L   +K      ++  E+      + +++  G+K ++   
Sbjct: 180 KATTSFNFDTLSERLQESAFLLKNLKITLKDLRDGKERE-----DVYHYEEGIKEFVSYI 234

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            E + ++  ++ T      G     V+ A  + ++    I S+ N + T +GGTHE G +
Sbjct: 235 NEGKEVLH-DVTTFTGAANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFK 290

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLD 391
            A+TR    YA        +  ++  +D+      ++SV I E   +F GQTK+KL + +
Sbjct: 291 TAMTRVFNDYARRINELKDKDKNLDGNDIREGLTAVISVRIPEELLQFEGQTKSKLGTSE 350

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LR 448
           A+  V++ + +   +YL +    +  L++  I+  + R   RK RE  R     K     
Sbjct: 351 ARSAVDSVVSEKLPYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTL 410

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           L GKL           EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  E I 
Sbjct: 411 LSGKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKAKLEDIF 470

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            N++I  ++  +G    + ++ ED  Y +VIIMTDAD DGAHI  LLLTFF++ M  L++
Sbjct: 471 KNEEINTIIHTIGAGVGNDFKLEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMRPLVQ 530

Query: 569 QKHLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
              +F+  PPL+++ +G     K  YA  ++  +K+ ++  K       + R+KGLGEM 
Sbjct: 531 AGRVFIALPPLYKLEKGKGKSKKVEYAWTDDELEKLQKQLGK----GFILQRYKGLGEMN 586

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
             QL ET M+   RTL+RV+I+ ++ S K     +  LMG K   R ++I+    F
Sbjct: 587 PEQLWETTMNPETRTLIRVQIDDEVRSSKR----VTTLMGDKVAPRREWIENHVEF 638


>gi|110003910|emb|CAK98250.1| dna gyrase subunit b protein [Spiroplasma citri]
          Length = 639

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 262/649 (40%), Positives = 378/649 (58%), Gaps = 18/649 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           DNY++ SI+ILEGLE +R RPGMYIG T+ + LHHL  E++DN++DEV+A +AN I++ L
Sbjct: 3   DNYNSESIQILEGLEAIRKRPGMYIGATNARGLHHLVWEIVDNSIDEVLANFANKIKIIL 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +  +TV+DNGRGIP+E HPK    STLE + T LHAGGKFD++TY+ISGGLHGVG SV
Sbjct: 63  NKDESITVIDNGRGIPIEIHPK-TKVSTLETVFTILHAGGKFDSNTYKISGGLHGVGASV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  L V V + N  +  +F  G  +    K+    ++ GT +TF PD KIF +   
Sbjct: 122 VNALSKYLKVEVRKNNKKYVMEFHNGGQILTPIKEVGSTSETGTTVTFLPDEKIFKETTI 181

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F  + +    +   +L+  ++      +E  E+    +   + F  G+K Y+    +   
Sbjct: 182 FSFSTIQNRIKQLVFLNKGLEISLVDLREEDEE----KTVLYQFNNGIKDYVLELNKTIG 237

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
              +++F  +  +       VE+ + + +     I S+CN I T EGGTHE G R+A+ R
Sbjct: 238 TPLNDVFYVEGIEDNI---VVEFGLQYNDNYSENIFSFCNNINTHEGGTHEEGARLAIVR 294

Query: 341 GIKKYAELTQNKR---AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
            I  Y +               DD+      I+S+   EP++ GQTKTKL + + ++ V 
Sbjct: 295 EINNYFKNINKNNKGNEDKFTWDDIKEGMTIIISIRHPEPQYEGQTKTKLGNSEVKKIVS 354

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADC 456
           N +      YL++NP +A K++E +    + R+  ++ +E   RK  +    LPGKL+DC
Sbjct: 355 NIVGKGLSSYLLENPEDAKKIIEKISLSLKARIVAQRAKETTRRKIVMDSFSLPGKLSDC 414

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
               A   EL+IVEGDSAGGSAK  RNR  QA+LPLRGKILNV  A   KI  N +I  +
Sbjct: 415 ETKDAKIAELYIVEGDSAGGSAKSGRNRKFQAILPLRGKILNVEKAKQIKIFENNEINSI 474

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + ALG   +  + ++ LRY+KVIIMTDADVDGAHI  LLLTFFY+ M DLIE  ++++  
Sbjct: 475 ITALGAGIKDNFNDKKLRYQKVIIMTDADVDGAHIRILLLTFFYRYMKDLIENGNIYIAQ 534

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+++    +  Y + +   +   EE  K  K    I R+KGLGEM   QL ET MD  
Sbjct: 535 PPLYKVENSNQIRYVYSDNELELYKEELLKQNK-NYTIQRYKGLGEMNPEQLWETTMDPE 593

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +R LL+V +N       +     N+LMG   + R KFI+E A ++ ++ 
Sbjct: 594 RRLLLKVSVNNAF----EANLICNELMGENVEPRKKFIRENAKYVKNLD 638


>gi|268610497|ref|ZP_06144224.1| DNA gyrase subunit B [Ruminococcus flavefaciens FD-1]
          Length = 643

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 242/655 (36%), Positives = 359/655 (54%), Gaps = 20/655 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           +Q  ++NYD + I++LEGLE VR RPGMYIG T    LHHL  E++DN++DE +AGY   
Sbjct: 2   SQQNNNNYDENDIQVLEGLEAVRKRPGMYIGSTGPGGLHHLVYEIVDNSIDEALAGYCTE 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V +     + V DNGRGIPV  HPK    S   ++ T LHAGGKF    Y++SGGLHG
Sbjct: 62  INVEILEGDVIRVSDNGRGIPVGIHPK-EGISAATVVYTILHAGGKFGGGGYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS+ L +TV     I+ Q+F RG     L+         GT + F+ D +IF
Sbjct: 121 VGASVVNALSEWLELTVKDGEHIYFQRFERGHYDEQLKIIGDTTE-TGTSVMFKADGEIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                +D   LLK  + +A+L+  +K  ++  ++     G    E  ++ GG++ ++   
Sbjct: 180 EHTV-YDYEILLKRLREQAFLNAGIKIVFTDKRDKDNIVG----ETLHYEGGIREFVDHI 234

Query: 277 LENR--SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              R    +S E+      +  +     E A+ + +     I S+ N I T +GG+HE+G
Sbjct: 235 HATRGLESLSGEVIYVSGTQGDSF---AEIAMQYNDSYNEVILSFANNIHTKDGGSHETG 291

Query: 334 LRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
            + ALT+ I +Y       K    +  +D+      I+SV + E EF GQTK +L + + 
Sbjct: 292 FKNALTKVINEYGSKMGKLKEGEKLKGEDVREGLTAIISVKLTECEFEGQTKGRLGNPEV 351

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIER-SEERLRRRKQREVNRKTAIRKLRLPG 451
           +  VE  + +   ++L +NP  A  + +  +         +R +    +K A     +P 
Sbjct: 352 KPFVEKLVTEKLMNFLEENPETANIIFDKCMSALRAREAAKRAREAERKKNAFGNAAMPE 411

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS+     TE++IVEGDSAGGSAKQ R+R  QA+L L GK+LNV  A  ++I  N 
Sbjct: 412 KLADCSERDNRYTEIYIVEGDSAGGSAKQGRDRRYQAILALWGKMLNVEKARVDRIYGND 471

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++  +V ALG      +  E LRY KVIIM DADVDG HI +LLLTFF++ M  LI   +
Sbjct: 472 KLAPVVTALGTGLGEDFDIEKLRYGKVIIMADADVDGMHIRTLLLTFFFRYMRPLITNGN 531

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK-IEISRFKGLGEMLASQLKE 630
           +++  PPLFR+ +  +  YA  +E + + + E  + GK K + + R+KGLGEM   QL E
Sbjct: 532 VYIAQPPLFRVERKKQVRYAFSDEERDQYIAELSEDGKYKDVAVQRYKGLGEMDPEQLWE 591

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T MD   RT++++ +   L       +    LMG K + R  FI++ A F  ++ 
Sbjct: 592 TTMDPEHRTIVKISMEDALK----ADEIFTILMGDKVEPRRLFIEKNAKFAQNLD 642


>gi|55820667|ref|YP_139109.1| DNA topoisomerase IV subunit B [Streptococcus thermophilus LMG
           18311]
 gi|55736652|gb|AAV60294.1| DNA topoisomerase IV (subunit B) [Streptococcus thermophilus LMG
           18311]
          Length = 649

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 232/652 (35%), Positives = 369/652 (56%), Gaps = 32/652 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ ++I V+L
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGDVIAVTL 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G ++V D+GRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSVSVSDSGRGMPTGMH--AMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R  +++ Q+F  G  P++ LEK  K  ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGSVYRQRFENGGHPVTGLEKIGKAPKSKTGTKVTFMPDASIFSTT 186

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   V    +  +   E      +EEF++  G++ ++    E+
Sbjct: 187 -DFKFNTISERLKESAFLLKNVTMTLTDLRGEEE-----VREEFHYENGVQDFVSYLNED 240

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
           +  ++  I+    ++       +++   + +    I S+ N + T +GG+HE+G + A+T
Sbjct: 241 KETLTPVIYIDGDQQDFHLELALQYNDGYSDN---ILSFVNNVRTKDGGSHETGFKSAIT 297

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQRT 395
           +    YA  T    ++  ++   D       ++S+ +     +F GQTK KL S  A+  
Sbjct: 298 KAFNDYARKTGLLKEKDKNLEGSDYREGLSAVISLLVPEEHLQFEGQTKDKLGSPLARPI 357

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGK 452
           V+  + +   ++L++N   A+ L+   I+  + R   RK R+ +R     K       GK
Sbjct: 358 VDGIVSEYLTYFLMENGDLASNLVRKAIKARDAREAARKARDASRNGKKNKKDKGLLSGK 417

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L       A   EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N++
Sbjct: 418 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++  +G    + +  +D+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H+
Sbjct: 478 INTMIYTIGAGVGADFNLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHV 537

Query: 573 FLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           ++  PPL+++++G        YA  +   +++ ++F +       + R+KGLGEM A QL
Sbjct: 538 YIALPPLYKMSKGKGKKEVVEYAWTDGELEELRQKFGRGAL----LQRYKGLGEMNADQL 593

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET M+   RTL+RV I+     L   +  ++ LMG KA  R ++I++   F
Sbjct: 594 WETTMNPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 641


>gi|254366465|ref|ZP_04982509.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis str. Haarlem]
 gi|134151977|gb|EBA44022.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis str. Haarlem]
          Length = 697

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 253/686 (36%), Positives = 368/686 (53%), Gaps = 47/686 (6%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A   + A D Y A+SI ILEGLE VR RPGMYIG T E+ LHHL  EV+DNA+DE +AGY
Sbjct: 24  AAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGY 83

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A  + V L  +G + V D+GRGIPV  H       T+++++T LHAGGKFD+  Y ISGG
Sbjct: 84  ATTVNVVLLEDGGVEVADDGRGIPVATH--ASGIPTVDVVMTQLHAGGKFDSDAYAISGG 141

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS  L V + R    +SQ + +  PL    K+     K G+ + F  DP
Sbjct: 142 LHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLGL--KQGAPTKKTGSTVRFWADP 199

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY------------------ 255
            +F     +D   + +  Q  A+L+  +    + ++   ++                   
Sbjct: 200 AVFET-TEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASER 258

Query: 256 -------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
                     +   F++PGGL  +++     ++ I S I     +  G     VE A+ W
Sbjct: 259 AAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGH---EVEIAMQW 315

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
                  + ++ NTI T EGGTHE G R ALT  + KYA+  +    +  ++  DD+   
Sbjct: 316 NAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREG 375

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  ++   +  
Sbjct: 376 LAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSS 435

Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGGSAK  R+ 
Sbjct: 436 AQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDS 495

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY K+++M DA
Sbjct: 496 MFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRYHKIVLMADA 555

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603
           DVDG HI++LLLT  ++ M  LIE  H+FL  PPL+++        +A+ +  +  +LE 
Sbjct: 556 DVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEA 615

Query: 604 FKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
             K GK KI     I R+KGLGEM A +L ET MD + R L +V ++          +  
Sbjct: 616 GLKAGK-KINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELF 670

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
           + LMG   D R  FI   A  +  + 
Sbjct: 671 SILMGEDVDARRSFITRNAKDVRFLD 696


>gi|254820903|ref|ZP_05225904.1| DNA gyrase subunit B [Mycobacterium intracellulare ATCC 13950]
          Length = 677

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 254/688 (36%), Positives = 371/688 (53%), Gaps = 49/688 (7%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A   + A D+Y AS+I +LEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +AGY
Sbjct: 2   AAQKKKAQDDYGASAITVLEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNSVDEAMAGY 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF--DNSTYEIS 151
           AN ++V +  +G + V DNGRGIPV  H       T+++++T LHAGGKF  +NS Y +S
Sbjct: 62  ANKVDVRILDDGSVEVADNGRGIPVAMH--ATGAPTVDVVMTQLHAGGKFGGENSGYNVS 119

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS  L V +AR    +SQ +   +P +   K+ +   + GT I F  
Sbjct: 120 GGLHGVGVSVVNALSTRLEVDIARDGYEWSQFYDHAVPGTL--KQGEATKRTGTTIRFWA 177

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK----------------- 254
           DP IF     +D   + +  Q  A+L+  +    + ++   E+                 
Sbjct: 178 DPDIFET-TEYDFETVARRLQEMAFLNKGLTINLTDERVSNEEVVDEVVSDTADAPKSAQ 236

Query: 255 --------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
                       +   F++PGGL  +++     +S I   I     +  G     VE A+
Sbjct: 237 EKAAESTAPHKVKHRTFHYPGGLVDFVKHINRTKSPIQQSIIDFDGKGPGH---EVEIAM 293

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLM 363
            W       + ++ NTI T EGGTHE G R ALT  + KY   +     +  ++  DD+ 
Sbjct: 294 QWNGGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLTGDDIR 353

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  ++   +
Sbjct: 354 EGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPADAKVVVNKAV 413

Query: 424 ERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
             ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGGSAK  R
Sbjct: 414 SSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGR 473

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           +   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY K+++M 
Sbjct: 474 DSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDITKLRYHKIVLMA 533

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKIL 601
           DADVDG HI++LLLT  ++ M  LIE  H+FL  PPL+++        +A+ +  +  +L
Sbjct: 534 DADVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLL 593

Query: 602 EEFKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           E  +K GK KI     I R+KGLGEM A +L ET MD   R L +V ++          +
Sbjct: 594 EAGQKAGK-KINKDDGIQRYKGLGEMDAKELWETTMDPTVRVLRQVTLDD----AAAADE 648

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
             + LMG   D R  FI   A  +  + 
Sbjct: 649 LFSILMGEDVDARRSFITRNAKDVRFLD 676


>gi|1209515|gb|AAC43643.1| gyrase B [Mycoplasma pneumoniae]
          Length = 637

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 250/652 (38%), Positives = 375/652 (57%), Gaps = 28/652 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
             + + +  YD+SSI+ILEGLE VR RPGMYIG T E+ LHH+  E+IDN++DE + G+A
Sbjct: 1   MEDNNKTQAYDSSSIKILEGLEAVRKRPGMYIGSTGEEGLHHMIWEIIDNSIDEAMGGFA 60

Query: 95  NLIEVSLDGNGFLT-VVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           + ++++L  + F+T V D+GRGIPV+ HPK  N+ST+E + T LHAGGKFDN +Y++SGG
Sbjct: 61  STVKLTL-KDNFVTIVEDDGRGIPVDIHPK-TNRSTVETVFTVLHAGGKFDNDSYKVSGG 118

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPD 212
           LHGVG SVVNALS    V VAR++  +   F  G   +  L  + K   + GT++ F PD
Sbjct: 119 LHGVGASVVNALSSSFKVWVAREHQQYFLAFHNGGEVIGDLVNEGKCDKEHGTKVEFVPD 178

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
             +      +    +    Q  A+L+  ++  +  ++        P+   + + GGL  Y
Sbjct: 179 FTVMEKS-DYKQTVIASRLQQLAFLNKGIQIDFVDERRQ-----NPQSFSWKYDGGLVQY 232

Query: 273 LQTKLENRSLISSEIFTGK-------TEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
           +      +  +  +I  G+         +  ++   VE A  + +     I S+CN I T
Sbjct: 233 IHHLNNEKEPLFEDIIFGEKTDTVKSVSRDESYTIKVEVAFQYNKTYNQSIFSFCNNINT 292

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQ 382
            EGGTH  G R AL + I ++A   +  +     I  DD+      I+S+    P++ GQ
Sbjct: 293 TEGGTHVEGFRNALVKIINRFAVENKFLKETDEKITRDDICEGLTAIISIKHPNPQYEGQ 352

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TK KL + + +  V + + + F+ ++++NP EA  ++   +   E R R ++ RE   RK
Sbjct: 353 TKKKLGNTEVRPLVNSIVSEIFERFMLENPQEANAIIRKTLLAQEARRRSQEARELTRRK 412

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           +      LPGKLADC+      +EL+IVEGDSAGG+AK  R+R  QA+LPLRGKILNV  
Sbjct: 413 SPFDSGSLPGKLADCTTRDPSISELYIVEGDSAGGTAKTGRDRYFQAILPLRGKILNVEK 472

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
           +  E+I NN +I  LV A+GC  +  +  E LRY K+IIMTDADVDGAHI +LLLTFF++
Sbjct: 473 SHFEQIFNNVEISALVMAVGCGIKPDFELEKLRYNKIIIMTDADVDGAHIRTLLLTFFFR 532

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
            MY L+EQ ++++  PPL++++   K +Y   +   ++  ++   H   K  + R+KGLG
Sbjct: 533 FMYPLVEQGNIYIAQPPLYKVSYSNKDLYMQTDVQLEEWKQQ---HPNLKYNLQRYKGLG 589

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKF 673
           EM A QL ET MD   RTLL+V +            + + LMG +   R +F
Sbjct: 590 EMDAIQLWETTMDPKVRTLLKVTVED----ASIADKAFSLLMGDEVPPRREF 637


>gi|312869074|ref|ZP_07729248.1| DNA topoisomerase IV, B subunit [Lactobacillus oris PB013-T2-3]
 gi|311095320|gb|EFQ53590.1| DNA topoisomerase IV, B subunit [Lactobacillus oris PB013-T2-3]
          Length = 658

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 245/651 (37%), Positives = 359/651 (55%), Gaps = 34/651 (5%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YD SSI++L+GLE VR RPGMYIG TD + LHHL  E++DNA+DE ++GY + I V+++ 
Sbjct: 8   YDESSIQVLKGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGDEINVTIEA 67

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN-STYEISGGLHGVGISVV 162
           +  +TV D+GRG+PV  H     K T E+I+T LHAGGKF     Y+ SGGLHGVG SVV
Sbjct: 68  DNSITVQDHGRGMPVGMH--ASGKPTPEVIMTVLHAGGKFGQADGYKTSGGLHGVGASVV 125

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS  L +T+ R +  + +KF  G  P+  L+K  K R   GT +TF+PDP IF     
Sbjct: 126 NALSTNLTLTIVRDHVRYQEKFKNGGQPVGTLKKLGKTRADSGTTVTFKPDPAIFTTTT- 184

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +D   L    +  A+L   +K   +  +   E+  +     F F  G++ ++    E + 
Sbjct: 185 YDYNTLANRLRESAFLLKGIKIVLTDKRPGQEQENV-----FQFNDGIQEFVSYLNEGKD 239

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340
            +         + +G     VE A  + +   E   S+ N + T +GGTHE+G R A T+
Sbjct: 240 TLGK-TLYFDGKDQGV---EVEVAAQYNDGYSENLLSFVNNVRTPDGGTHEAGFRSAWTK 295

Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA+     +    ++   D+      ++SV I E   +F GQTK KL + +A++ V
Sbjct: 296 TFNEYAKRVGLLKANDKNLEGSDVREGLTAVISVRIPERLLQFEGQTKDKLGTPEARKIV 355

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL---RLPGKL 453
           +  + +  ++ L++N   A  L+   ++  E R   RK R   R    +      L GKL
Sbjct: 356 DTIVSEQLNYALMENGDFAQMLIRKALKAREAREAARKARNQARGGKRKSRKERNLSGKL 415

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                  A+  ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + +  N+++
Sbjct: 416 TPAQSKNANKNELFLVEGDSAGGSAKQGRDRKYQAILPLRGKVLNTEKAKLDDVLKNEEL 475

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++  +G    S++  ED  Y+K+IIMTDAD DGAHI  LLLTFFY+ M  +IE   ++
Sbjct: 476 NTIIYTVGAGAGSEFDVEDSNYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKVY 535

Query: 574 LISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+R+ QG     K  YA   +   K+ +   K      ++ RFKGLGEM A QL 
Sbjct: 536 IALPPLYRLQQGKGAKTKITYAWTNDELTKLTKRMGKTA----QLQRFKGLGEMNADQLW 591

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV I       +  +  +  LMG K + R ++I+E   F
Sbjct: 592 ETTMNPETRTLIRVRIED----AELAERRVTTLMGNKVEPRREWIEENVQF 638


>gi|227529213|ref|ZP_03959262.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC
           49540]
 gi|227350859|gb|EEJ41150.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC
           49540]
          Length = 676

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 240/656 (36%), Positives = 361/656 (55%), Gaps = 34/656 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  + YDASSI++L+GLE VR RPGMYIG TD + LHHL  E++DNA+DE ++GY + I 
Sbjct: 3   TKKETYDASSIQVLKGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGDEIN 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGV 157
           V+++ +  +TV D+GRG+PV  H     K T E+I+T LHAGGKF  +  Y+ SGGLHGV
Sbjct: 63  VTIEEDNSITVQDHGRGMPVGMH--ASGKPTPEVIMTVLHAGGKFGQSDGYKTSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           G SVVNALS  L +T+ R +  + +KF  G  P+  L+K        GT ++F+PDP IF
Sbjct: 121 GASVVNALSTNLTLTIVRDHERYQEKFKDGGQPIGTLKKLGHTNAGNGTTVSFKPDPSIF 180

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                +D   L    +  A+L   +K   +  ++  EK     ++ F +  G++ ++   
Sbjct: 181 TTTV-YDYNTLANRLRESAFLLKGIKIVLTDKRKDHEK-----QDIFQYKEGIQEFVAYL 234

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLR 335
            E +  +   +      + G     VE A  + +   E   S+ N + T +GGTHE+G R
Sbjct: 235 NEGKDTLGKVL-YFDGSQDGV---EVEVAAQYNDGYSESLLSFVNNVRTPDGGTHEAGFR 290

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLD 391
            A T+   +YA        +  ++   D+      ++SV I E   +F GQTK KL + +
Sbjct: 291 SAWTKTFNEYAHKVGLLKDKDKNLEGSDVREGLTAVVSVRIPERILQFEGQTKDKLGTPE 350

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL---R 448
           A++ V++ + +   + L++N   A  L+   I+  E R   RK R   R    +      
Sbjct: 351 ARKIVDSIVSEQLGYALMENGDFAQMLIRKSIKAREAREAARKARNQARGGKRKSRKERN 410

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           L GKL       A   ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + + 
Sbjct: 411 LSGKLTPAQSKNAKKNELFLVEGDSAGGSAKQGRDRKYQAILPLRGKVLNTEKAKLDDVL 470

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            N+++  ++  +G    S++  ED  Y+K+IIMTDAD DGAHI  LLLTFFY+ M  +IE
Sbjct: 471 KNEELNTIIYTVGAGAGSEFNVEDSNYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIE 530

Query: 569 QKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
              +++  PPL+R+  G     K  YA   +   ++ ++  K      ++ RFKGLGEM 
Sbjct: 531 AGKIYIALPPLYRLQTGRGAKTKITYAWTNDELTELTKKAGKSA----QLQRFKGLGEMN 586

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           A QL ET M+   RTL++V I       +  +  +  LMG K + R ++I++   F
Sbjct: 587 ADQLWETTMNPETRTLIQVRIED----AELAERRVTTLMGNKVEPRREWIEDNVHF 638


>gi|308376284|ref|ZP_07438242.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu008]
 gi|308351597|gb|EFP40448.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu008]
          Length = 696

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 253/686 (36%), Positives = 368/686 (53%), Gaps = 47/686 (6%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A   + A D Y A+SI ILEGLE VR RPGMYIG T E+ LHHL  EV+DNA+DE +AGY
Sbjct: 23  AAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGY 82

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A  + V L  +G + V D+GRGIPV  H       T+++++T LHAGGKFD+  Y ISGG
Sbjct: 83  ATTVNVVLLEDGGVEVADDGRGIPVATH--ASGIPTVDVVMTQLHAGGKFDSDAYAISGG 140

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS  L V + R    +SQ + +  PL    K+     K G+ + F  DP
Sbjct: 141 LHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLGL--KQGAPTKKTGSTVRFWADP 198

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY------------------ 255
            +F     +D   + +  Q  A+L+  +    + ++   ++                   
Sbjct: 199 AVFET-TEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASER 257

Query: 256 -------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
                     +   F++PGGL  +++     ++ I S I     +  G     VE A+ W
Sbjct: 258 AAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGH---EVEIAMQW 314

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
                  + ++ NTI T EGGTHE G R ALT  + KYA+  +    +  ++  DD+   
Sbjct: 315 NAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREG 374

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  ++   +  
Sbjct: 375 LAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSS 434

Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGGSAK  R+ 
Sbjct: 435 AQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDS 494

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY K+++M DA
Sbjct: 495 MFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRYHKIVLMADA 554

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603
           DVDG HI++LLLT  ++ M  LIE  H+FL  PPL+++        +A+ +  +  +LE 
Sbjct: 555 DVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEA 614

Query: 604 FKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
             K GK KI     I R+KGLGEM A +L ET MD + R L +V ++          +  
Sbjct: 615 GLKAGK-KINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELF 669

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
           + LMG   D R  FI   A  +  + 
Sbjct: 670 SILMGEDVDARRSFITRNAKDVRFLD 695


>gi|215432910|ref|ZP_03430829.1| DNA gyrase subunit B [Mycobacterium tuberculosis EAS054]
 gi|260198989|ref|ZP_05766480.1| DNA gyrase subunit B [Mycobacterium tuberculosis T46]
 gi|289441372|ref|ZP_06431116.1| DNA gyrase, B subunit [Mycobacterium tuberculosis T46]
 gi|289748467|ref|ZP_06507845.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis T92]
 gi|289756064|ref|ZP_06515442.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289414291|gb|EFD11531.1| DNA gyrase, B subunit [Mycobacterium tuberculosis T46]
 gi|289689054|gb|EFD56483.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis T92]
 gi|289696651|gb|EFD64080.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
          Length = 714

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 254/686 (37%), Positives = 368/686 (53%), Gaps = 47/686 (6%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A   + A D Y A+SI ILEGLE VR RPGMYIG T E+ LHHL  EV+DNA+DE +AGY
Sbjct: 41  AAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGY 100

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A  + V L  +G + V D+GRGIPV  H       T+++++T LHAGGKFD+  Y ISGG
Sbjct: 101 ATTVNVVLLEDGGVEVADDGRGIPVATH--ASGIPTVDVVMTQLHAGGKFDSDAYAISGG 158

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS  L V + R    +SQ + +  PL    K+     K G+ + F  DP
Sbjct: 159 LHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLGL--KQGAPTKKTGSTVRFWADP 216

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY------------------ 255
            +F     +D   + +  Q  A+L+  +    + ++   ++                   
Sbjct: 217 AVFET-TEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASER 275

Query: 256 -------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
                     +   F++PGGL  +++     ++ I S I     +  G     VE AI W
Sbjct: 276 AAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGH---EVEIAIQW 332

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
                  + ++ NTI T EGGTHE G R ALT  + KYA+  +    +  ++  DD+   
Sbjct: 333 NAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREG 392

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  ++   +  
Sbjct: 393 LAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSS 452

Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGGSAK  R+ 
Sbjct: 453 AQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDS 512

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY K+++M DA
Sbjct: 513 MFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRYHKIVLMADA 572

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603
           DVDG HI++LLLT  ++ M  LIE  H+FL  PPL+++        +A+ +  +  +LE 
Sbjct: 573 DVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEA 632

Query: 604 FKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
             K GK KI     I R+KGLGEM A +L ET MD + R L +V ++          +  
Sbjct: 633 GLKAGK-KINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELF 687

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
           + LMG   D R  FI   A  +  + 
Sbjct: 688 SILMGEDVDARRSFITRNAKDVRFLD 713


>gi|315302927|ref|ZP_07873658.1| DNA topoisomerase IV, B subunit [Listeria ivanovii FSL F6-596]
 gi|313628700|gb|EFR97102.1| DNA topoisomerase IV, B subunit [Listeria ivanovii FSL F6-596]
          Length = 655

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 237/652 (36%), Positives = 359/652 (55%), Gaps = 35/652 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + Y+  SI++LEGL+ VR RP MYIG TD + LHHL  E++DN++DE +AG+   I V+L
Sbjct: 4   NEYNDDSIQVLEGLDAVRKRPAMYIGSTDVRGLHHLVYEIVDNSVDEALAGFGKKIVVTL 63

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGVGIS 160
             +G ++V D GRG+PV  H     KST+E+ILT LHAGGKF     Y+ SGGLHGVG S
Sbjct: 64  HDDGSVSVSDEGRGMPVGMHK--TGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGVGSS 121

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ L VT+ R+   + Q+F  G       KK       GT I F+PDP IF    
Sbjct: 122 VVNALSEWLVVTINREGATYEQRFKNGGKPDGTLKKIGKSKATGTTIRFKPDPAIFPTT- 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            ++   L +  +  A+L   +      ++       +   E F+F  G+K +++   E +
Sbjct: 181 SYNYETLSERLRESAFLLKGMLIQLIDER-------VGMAESFHFEEGVKNFVEYINEGK 233

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
            ++     + + E        VE A  + +     I S+ N + T   G+HESG++ A+T
Sbjct: 234 DVLHPVA-SFEGENATI---EVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMT 289

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395
           R    YA       ++  ++   D+      +LS+ + E   +F GQTK KL + +A++ 
Sbjct: 290 RIFNDYARRVNLLKEKEKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQA 349

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGK 452
           V+  + +   ++L +NP  ++ L++  ++  E R   RK RE  R    +K     L GK
Sbjct: 350 VDAVVAEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGK 409

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L        +  EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I  N++
Sbjct: 410 LTPAQSRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEE 469

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++  +G    +++   D  Y+KV+IMTDAD DGAHI  LLLTFFY+ M  L+E   +
Sbjct: 470 ISTIIHTVGAGVGTEFDVADCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKV 529

Query: 573 FLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           F+  PPL+++++G   K V  YA  +E     +++  K       I R+KGLGEM A QL
Sbjct: 530 FIALPPLYKVSRGSGKKEVIEYAWTDEELDSAIQKIGK----GYMIQRYKGLGEMNADQL 585

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET M+ + RTL+RV ++         +  +  LMG K + R K+I++   F
Sbjct: 586 WETTMNPDTRTLIRVRVDD----TARAERRVATLMGDKVEPRRKWIEKHVEF 633


>gi|69251026|ref|ZP_00605191.1| Gram positive topoisomerase IV, subunit B [Enterococcus faecium DO]
 gi|68193894|gb|EAN08477.1| Gram positive topoisomerase IV, subunit B [Enterococcus faecium DO]
          Length = 665

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 244/642 (38%), Positives = 350/642 (54%), Gaps = 33/642 (5%)

Query: 52  LEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVD 111
           +EGLE VR RPGMYIG TD + LHHL  E++DNA+DE ++GY + I+V++  +  +TV D
Sbjct: 1   MEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGSEIDVTIHEDNSITVAD 60

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171
           +GRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHGVG SVVNALS  L V
Sbjct: 61  SGRGMPVGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSKWLIV 118

Query: 172 TVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           T+ R    + QKF  G  P   L+K  K +   GT + F PD  IF     F    L + 
Sbjct: 119 TIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTTVHFLPDDTIFSTT-KFSYEILAER 177

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  A+L   VK   S  +        P KE F++  G+K ++    E +  ++  +   
Sbjct: 178 LRESAFLLKGVKISLSDLR-----GEEPVKEIFHYEEGIKEFVDYLNEEKDTLTPVV-YF 231

Query: 291 KTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             EK+G     VE A  + +   E   S+ N + T +GGTHE+G++ A+T+   +YA   
Sbjct: 232 SGEKEGI---EVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGMKAAMTKSYNEYARKV 288

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFD 405
               +R  ++   D       +LS+ + E   +F GQTK KL +  A+  V+N + +   
Sbjct: 289 GLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTPVARTVVDNVISEQMG 348

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLADCSQNIAH 462
            YL +N   +  L+   I+  E R   RK RE +R    RK     L GKL         
Sbjct: 349 FYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPK 408

Query: 463 GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
             EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I  N++I  ++  +G 
Sbjct: 409 KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGA 468

Query: 523 RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI 582
               ++  ED  Y+KVIIMTDAD DGAHI  LLLTFFY+ M  LIE   +++  PPL+++
Sbjct: 469 GVGPEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKV 528

Query: 583 TQG---TKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           ++G    + + YA  ++    ++++  K       + R+KGLGEM A QL ET MD   R
Sbjct: 529 SKGQGKKQVIEYAWTDDELAAMIKKVGK----GYMLQRYKGLGEMNAEQLWETTMDPTSR 584

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           TL+RV I+         +  +  LMG K + R K+I+    F
Sbjct: 585 TLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIENHVQF 622


>gi|167969468|ref|ZP_02551745.1| DNA gyrase subunit B [Mycobacterium tuberculosis H37Ra]
 gi|215413859|ref|ZP_03422524.1| DNA gyrase subunit B [Mycobacterium tuberculosis 94_M4241A]
 gi|215448278|ref|ZP_03435030.1| DNA gyrase subunit B [Mycobacterium tuberculosis T85]
 gi|254548933|ref|ZP_05139380.1| DNA gyrase subunit B [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|297632473|ref|ZP_06950253.1| DNA gyrase subunit B [Mycobacterium tuberculosis KZN 4207]
 gi|297729442|ref|ZP_06958560.1| DNA gyrase subunit B [Mycobacterium tuberculosis KZN R506]
 gi|313656771|ref|ZP_07813651.1| DNA gyrase subunit B [Mycobacterium tuberculosis KZN V2475]
 gi|158513716|sp|A5TY73|GYRB_MYCTA RecName: Full=DNA gyrase subunit B
 gi|158517773|sp|P0C5C5|GYRB_MYCTU RecName: Full=DNA gyrase subunit B
 gi|323717344|gb|EGB26549.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis CDC1551A]
          Length = 675

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 253/686 (36%), Positives = 368/686 (53%), Gaps = 47/686 (6%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A   + A D Y A+SI ILEGLE VR RPGMYIG T E+ LHHL  EV+DNA+DE +AGY
Sbjct: 2   AAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGY 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A  + V L  +G + V D+GRGIPV  H       T+++++T LHAGGKFD+  Y ISGG
Sbjct: 62  ATTVNVVLLEDGGVEVADDGRGIPVATH--ASGIPTVDVVMTQLHAGGKFDSDAYAISGG 119

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS  L V + R    +SQ + +  PL    K+     K G+ + F  DP
Sbjct: 120 LHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLGL--KQGAPTKKTGSTVRFWADP 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY------------------ 255
            +F     +D   + +  Q  A+L+  +    + ++   ++                   
Sbjct: 178 AVFET-TEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASER 236

Query: 256 -------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
                     +   F++PGGL  +++     ++ I S I     +  G     VE A+ W
Sbjct: 237 AAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGH---EVEIAMQW 293

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
                  + ++ NTI T EGGTHE G R ALT  + KYA+  +    +  ++  DD+   
Sbjct: 294 NAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREG 353

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  ++   +  
Sbjct: 354 LAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSS 413

Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGGSAK  R+ 
Sbjct: 414 AQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDS 473

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY K+++M DA
Sbjct: 474 MFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRYHKIVLMADA 533

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603
           DVDG HI++LLLT  ++ M  LIE  H+FL  PPL+++        +A+ +  +  +LE 
Sbjct: 534 DVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEA 593

Query: 604 FKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
             K GK KI     I R+KGLGEM A +L ET MD + R L +V ++          +  
Sbjct: 594 GLKAGK-KINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELF 648

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
           + LMG   D R  FI   A  +  + 
Sbjct: 649 SILMGEDVDARRSFITRNAKDVRFLD 674


>gi|328943452|ref|ZP_08240917.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Atopobium vaginae
           DSM 15829]
 gi|327491421|gb|EGF23195.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Atopobium vaginae
           DSM 15829]
          Length = 650

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 256/656 (39%), Positives = 367/656 (55%), Gaps = 26/656 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y  + I++LEGL+PVR RPGMYIG T    LHHL  E++DN++DE +AGY   I V +
Sbjct: 8   SSYGGNEIKVLEGLDPVRKRPGMYIGTTSASGLHHLVWEIVDNSVDEAMAGYCTSINVIV 67

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  ++V DNGRGIPVE HP+     TLE++LT LHAGGKFDN+ Y++SGGLHGVG+SV
Sbjct: 68  HPDNSISVEDNGRGIPVEMHPQ-KKIPTLEVVLTILHAGGKFDNAAYKVSGGLHGVGVSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  L   V+R   IF  +F RG     + +        GT ITF PD  IF     
Sbjct: 127 VNALSKRLIARVSRDGGIFEMEFKRGKVTKKMTRVGDSS-HTGTTITFWPDDTIFETTT- 184

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L    Q  A+L+  +    + ++E       P KEEF + GG+  +++   E ++
Sbjct: 185 YNFDTLHDRLQETAFLNKNLHISLTDEREE-----TPRKEEFCYSGGIVDFVKYLNEEKT 239

Query: 282 L----ISSEIFTGKTEKKG--THRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
           +           G +        RG VE +I W     E   S+ N I TDEGG H  G 
Sbjct: 240 ILPGLNDPIYIEGSSAPDTPLNQRGEVEVSIQWNTTYSEHVMSFANDIYTDEGGMHLEGF 299

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALT+ I  YA   +   ++  ++  DD+      I+SV + +P+F GQTK KL S   
Sbjct: 300 RSALTKTINDYARSHKLLKEKEANLTGDDIREGLCAIISVKLPDPQFEGQTKAKLGSSYM 359

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPG 451
           +      +      YL ++P +A ++ +   + ++ RL  ++ R+V R+  +     LPG
Sbjct: 360 RTLTNKIVGAGLTEYLEEHPNQAKEIFKKAFQAAKGRLAAQRARQVARRKGLLESASLPG 419

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS   A  TELFIVEGDSAGGSAK AR+RS QAVLPLRGKILNV     ++  +++
Sbjct: 420 KLADCSVRDAQMTELFIVEGDSAGGSAKMARDRSIQAVLPLRGKILNVERVQQDRALSSE 479

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
            I  L+ A+G     ++  E  RY K++IMTDADVDGAHI  LLLTFFY+ M  L++  +
Sbjct: 480 SITSLITAIGTGVGKEFNIEKARYHKIVIMTDADVDGAHIRILLLTFFYRYMKPLVDAGY 539

Query: 572 LFLISPPLFRITQGTKSVY--AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +++  PPL++I    K      + +E     LE  +     K  + R+KGLGEM   QL 
Sbjct: 540 IYVAQPPLYQIKAKGKKYGKYLYTDEEL--ALEAKQFEDSSKYSVQRYKGLGEMDPEQLW 597

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            T M+   R +LRV ++      ++ + ++  LMGT+ ++R  FIQ  A  +  + 
Sbjct: 598 STTMEPKNRIMLRVTVDD----AREAERAVANLMGTQVEKRKDFIQTHAKDVRFLD 649


>gi|251810787|ref|ZP_04825260.1| DNA topoisomerase [Staphylococcus epidermidis BCM-HMP0060]
 gi|251805715|gb|EES58372.1| DNA topoisomerase [Staphylococcus epidermidis BCM-HMP0060]
          Length = 664

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 237/654 (36%), Positives = 361/654 (55%), Gaps = 31/654 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  +NY   SI++LEGLE VR RPGMYIG TD++ LHHL  EV+DN++DEV+ GY + I 
Sbjct: 2   NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEVVDNSVDEVLNGYGDAIT 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+++ +G +++ DNGRG+P   H     K T E+I T LHAGGKF    Y+ SGGLHGVG
Sbjct: 62  VTINQDGSISIEDNGRGMPTGIH--VSGKPTAEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS+ L V + R   I++Q F  G   +    K     K GT++TF+PD +IF  
Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYTQNFKNGGIPATGLVKTGKTKKTGTKVTFKPDSEIFKS 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L +  Q  A+L   +K   +  +   E+      E +++  G+K ++    E
Sbjct: 180 TTTFNFDILSERLQESAFLLKDLKITLTDLRSGKERE-----EIYHYEEGIKEFVSYVNE 234

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            + ++  ++ T      G     V+ A  + ++    I S+ N + T +GGTHE G + A
Sbjct: 235 GKEVLH-DVTTFAGHSNGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 290

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
           +TR   +YA        +  ++  +D+      I+SV I E   +F GQTK+KL + +A+
Sbjct: 291 MTRVFNEYARRINELKDKDKNLDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTSEAR 350

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450
             V++ + +   +YL +    +  L++  I+  + R   RK RE  R     K     L 
Sbjct: 351 SAVDSVVSEKLPYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 410

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  E I  N
Sbjct: 411 GKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 470

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    + ++ ED  Y ++IIMTDAD DGAHI  LLLTFF++ M  L++  
Sbjct: 471 EEINTIIHTIGAGVGTDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 530

Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +F+  PPL+++ +G     K  YA  +E  + + ++  K       + R+KGLGEM   
Sbjct: 531 RVFIALPPLYKLEKGKGKNKKVEYAWTDEELENLQKQLGK----GFILQRYKGLGEMNPE 586

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET M+   RTL+RV++  ++ S K     +  LMG K   R ++I++   F
Sbjct: 587 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVAPRREWIEKHVEF 636


>gi|215425191|ref|ZP_03423110.1| DNA gyrase subunit B [Mycobacterium tuberculosis T92]
          Length = 675

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 254/686 (37%), Positives = 368/686 (53%), Gaps = 47/686 (6%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A   + A D Y A+SI ILEGLE VR RPGMYIG T E+ LHHL  EV+DNA+DE +AGY
Sbjct: 2   AAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGY 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A  + V L  +G + V D+GRGIPV  H       T+++++T LHAGGKFD+  Y ISGG
Sbjct: 62  ATTVNVVLLEDGGVEVADDGRGIPVATH--ASGIPTVDVVMTQLHAGGKFDSDAYAISGG 119

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS  L V + R    +SQ + +  PL    K+     K G+ + F  DP
Sbjct: 120 LHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLGL--KQGAPTKKTGSTVRFWADP 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY------------------ 255
            +F     +D   + +  Q  A+L+  +    + ++   ++                   
Sbjct: 178 AVFET-TEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASER 236

Query: 256 -------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
                     +   F++PGGL  +++     ++ I S I     +  G     VE AI W
Sbjct: 237 AAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGH---EVEIAIQW 293

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
                  + ++ NTI T EGGTHE G R ALT  + KYA+  +    +  ++  DD+   
Sbjct: 294 NAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREG 353

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  ++   +  
Sbjct: 354 LAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSS 413

Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGGSAK  R+ 
Sbjct: 414 AQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDS 473

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY K+++M DA
Sbjct: 474 MFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRYHKIVLMADA 533

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603
           DVDG HI++LLLT  ++ M  LIE  H+FL  PPL+++        +A+ +  +  +LE 
Sbjct: 534 DVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEA 593

Query: 604 FKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
             K GK KI     I R+KGLGEM A +L ET MD + R L +V ++          +  
Sbjct: 594 GLKAGK-KINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELF 648

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
           + LMG   D R  FI   A  +  + 
Sbjct: 649 SILMGEDVDARRSFITRNAKDVRFLD 674


>gi|213966260|ref|ZP_03394444.1| DNA gyrase, B subunit [Corynebacterium amycolatum SK46]
 gi|213951112|gb|EEB62510.1| DNA gyrase, B subunit [Corynebacterium amycolatum SK46]
          Length = 679

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 257/688 (37%), Positives = 372/688 (54%), Gaps = 53/688 (7%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +    YDASSI ILEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +AGYA  +E
Sbjct: 3   ATEHQYDASSITILEGLEAVRKRPGMYIGSTGERGLHHLVWEVVDNSVDEAMAGYATDVE 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+L  +G + V DNGRGIPVE HP      T+++++T LHAGGKFD+ +Y +SGGLHGVG
Sbjct: 63  VTLLEDGGVQVRDNGRGIPVEMHP--SGMPTVQVVMTQLHAGGKFDSESYAVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           ISVVNALS  +   V R    + Q F + +P   +    K     GT   F PDP+IF  
Sbjct: 121 ISVVNALSTRMETEVIRDGYTWYQNFDQAVPEEIIR--GKKTRGSGTTQRFWPDPEIFET 178

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDK----------------------------- 249
              F    + +  +  A+L+  +       +                             
Sbjct: 179 T-DFKFDTISRRLREMAFLNKGLTITLVDKRVSEEELEAEALAEQAETESAEIAKDAAEE 237

Query: 250 --EIAEKYGIPE--KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
             E  EK   P+  ++ F++P GL+ Y++T  +++++I   I +     +G     VE A
Sbjct: 238 QKEKTEKTTKPKERRKVFHYPNGLRDYVETLNKSKNIIHPTIISFDAAGEGH---EVEIA 294

Query: 306 IAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDL 362
           + W       + ++ NTI T EGGTHE G R ALT  + +YA   +   ++  ++  +D 
Sbjct: 295 MQWNSGYSESVHTFANTINTIEGGTHEEGFRSALTSLMNRYAREHRLLKEKENNLSGEDC 354

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
                 ++SV + +P+F GQTKTKL + + +  V+    +   H+L  NP EA  ++   
Sbjct: 355 REGLAAVISVKVADPQFEGQTKTKLGNTEVRSFVQRMTNEHIGHWLEANPAEAKAIVNKA 414

Query: 423 IERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
           I  +  R   RK R+ V RK+A     LPGKLADC       +ELFIVEGDSAGGSAK  
Sbjct: 415 IASAHARQAARKARDLVRRKSATDLGGLPGKLADCRSKDPKQSELFIVEGDSAGGSAKAG 474

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541
           RN   QA+LPLRGKILNV  A  +K   N ++  ++ ALG     ++  E LRY K+++M
Sbjct: 475 RNSLFQAILPLRGKILNVEKARLDKTLKNNEVQAIITALGTGIHDEFDIEKLRYHKIVLM 534

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKI 600
            DADVDG HIA+LLLT  ++ M  LI++ H++L  PPL+++     +  YA+ +  + ++
Sbjct: 535 ADADVDGQHIATLLLTLLFRLMRPLIDEGHVYLAQPPLYKLKWAKGEPGYAYSDAERDQL 594

Query: 601 LEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           LEE     +   +   + R+KGLGEM A++L +T MD + R L +V     L   +   +
Sbjct: 595 LEEGLAANRKINKDDGVQRYKGLGEMNAAELWDTTMDPDHRVLRKV----ALEDAQKADE 650

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
               LMG     R  FI   A  +  + 
Sbjct: 651 LFTILMGDDVASRRSFITRNAKDVRFLD 678


>gi|89894290|ref|YP_517777.1| hypothetical protein DSY1544 [Desulfitobacterium hafniense Y51]
 gi|89333738|dbj|BAE83333.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 638

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 250/648 (38%), Positives = 358/648 (55%), Gaps = 26/648 (4%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y+A SI++LEGLE VR RPGMYIG T  K LHH   E+IDNA+DE  AG+   IEV+L+ 
Sbjct: 7   YNAESIQVLEGLEAVRKRPGMYIGSTGSKGLHHCAWEIIDNAIDEAGAGFCTRIEVTLNP 66

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G LTV+DNGRG+P++ HP       + +    LHAGGKFD  +Y+ SGGLHGVG SVVN
Sbjct: 67  DGSLTVLDNGRGVPIDIHP-VKQIPAVRLAFEQLHAGGKFDGQSYKTSGGLHGVGASVVN 125

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIP-LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           ALS  L V V+R+  IF  ++  G    S L+  +K     GT++TF+PDP IF +   F
Sbjct: 126 ALSTFLVVEVSREGKIFRLEYEDGGKLKSDLKVIKKGIKGSGTKVTFKPDPLIFKETTSF 185

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L       A+L+  +    +  ++          E F    G+  +++   +    
Sbjct: 186 KFDTLRSRLMELAFLNPGLTIVLTDQRK------ETRSETFQSKNGVIGFVEHLNKESDY 239

Query: 283 I--SSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALT 339
                +    K EK       VE AI + + E+  + SY N I TDEGGTHESG R ALT
Sbjct: 240 NPVHKKPIFFKGEKDDII---VECAIQYNDGEDEHLRSYVNNIPTDEGGTHESGFRTALT 296

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
           +    Y +     K+  S+I DDL      +LSV +REP+F GQTKTKL + + +  V++
Sbjct: 297 KVFNAYGKKNNIFKKEESLIGDDLKDGLTCVLSVKVREPQFEGQTKTKLSNTEVEGVVQS 356

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
              +    +  QNP  A   +   +    ERL  ++ +E   +        L GKLA CS
Sbjct: 357 LTNEGISTFFEQNPAVAKDAISRALTTCLERLAAKRAKELKKKARDAEVKALSGKLAACS 416

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           +   +  ELF+VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  +K+  N++I  ++
Sbjct: 417 EKDRNRNELFLVEGDSAGGSAKSGRDRRFQAILPLRGKVINTYRAKMDKVLENEEIRSMI 476

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G     ++  +   Y +V IMTDAD+DGAHI  LLLTFFY+ M  LI    +++   
Sbjct: 477 TAIGAGIGKEFEVDKSNYARVCIMTDADIDGAHIRCLLLTFFYRYMKPLILGGKVYIAQA 536

Query: 578 PLFRI--TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
           PL+++   +G    YA+DE   +  L+E  K  K    + R+KGLGEM   QL ET ++ 
Sbjct: 537 PLYKVEKEKGKVVRYAYDEGELKDALKELGKSAK----LQRYKGLGEMNPEQLWETTLNP 592

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
             R +++V I+  L    + +  +  LMG + D R +F+ E   F +D
Sbjct: 593 VNRRMIQVTIDDAL----EAERKLKILMGEQVDPRREFLMENIVFTED 636


>gi|302382976|ref|YP_003818799.1| DNA topoisomerase IV subunit beta [Brevundimonas subvibrioides ATCC
           15264]
 gi|302193604|gb|ADL01176.1| DNA topoisomerase IV, B subunit [Brevundimonas subvibrioides ATCC
           15264]
          Length = 691

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 356/649 (54%), Positives = 460/649 (70%), Gaps = 15/649 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y ASSI +LEGLEPVR RPGMYIGGTDE+ALHHLF+EV+DNAMDE +A +A LI V LD
Sbjct: 51  SYSASSIEVLEGLEPVRKRPGMYIGGTDERALHHLFAEVLDNAMDEAVARHAKLITVDLD 110

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
             GFL+V D+GRGIPV+ HPK P KS LE+++T LH+GGKF    YE SGGLHGVG+SVV
Sbjct: 111 AEGFLSVRDDGRGIPVDPHPKHPGKSALEVVMTVLHSGGKFSGKAYETSGGLHGVGVSVV 170

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALSD L VTV R    + Q FSRG+PL  +E+ +  +  +GT I F PD +IFG  A F
Sbjct: 171 NALSDRLDVTVWRDGFEWKQSFSRGLPLGSIEQVQPSKK-KGTLIRFHPDAEIFGVGAAF 229

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
             ARL +M +SKAYL   V+  W+C  +       PE   F+FP GL   L  ++     
Sbjct: 230 KPARLFRMARSKAYLFRGVEIKWTCAPDRITDA-TPETATFHFPNGLADALAERIGELET 288

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWC-----EENPEITSYCNTILTDEGGTHESGLRVA 337
           ++   F+G+ E+KG   G VEWA+AW      E +  + SYCNT+ T +GGTHE+G R A
Sbjct: 289 VTP-TFSGRVERKGEA-GAVEWAVAWSPIGFGEADGFVQSYCNTVATPDGGTHEAGFRAA 346

Query: 338 LTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           L RG+K Y ELT  KRA+ I ++D++ +A  ++SVFIR PEF GQTK +L S + QR VE
Sbjct: 347 LVRGLKAYGELTHEKRAVQITAEDVIANAGAMISVFIRNPEFQGQTKDRLSSSEGQRLVE 406

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             LRDP DH+L +NP +A  LL ++IER+E+RLRRRK +EV R  A RKLRLPGKL+DCS
Sbjct: 407 ALLRDPLDHWLTENPKQANVLLGFIIERAEDRLRRRKDKEVQRAQATRKLRLPGKLSDCS 466

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           +  A+GTELFIVEGDSAGGSAKQAR+R+ QA+LPLRGKILNVA+A ++K+R N ++ DL 
Sbjct: 467 RQSANGTELFIVEGDSAGGSAKQARDRTTQAILPLRGKILNVANATADKLRANIELSDLT 526

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG  T  ++  + LRYE+++IMTDADVDGAHIA+LL+TFFY+ M ++I Q  LF+  P
Sbjct: 527 LALGVTTGPRFHIDQLRYERIVIMTDADVDGAHIAALLITFFYRSMPEVIRQGRLFMALP 586

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+R++ G  S YA DE H+ +++    K    K+E+ RFKGLGEM+ASQLKET MD  K
Sbjct: 587 PLYRLSAGPLSEYARDEAHRDELMATVFK--GKKVELGRFKGLGEMMASQLKETTMDPKK 644

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF-IDDVG 685
           RTL RV + +  N     +D + +LMG KAD RF+FIQ+ A F + D+ 
Sbjct: 645 RTLARVTLPESEND---IEDLVERLMGKKADARFRFIQDNAQFAVADLD 690


>gi|260203142|ref|ZP_05770633.1| DNA gyrase subunit B [Mycobacterium tuberculosis K85]
          Length = 675

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 252/686 (36%), Positives = 368/686 (53%), Gaps = 47/686 (6%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A   + A D Y A+SI ILEGLE VR RPGMYIG T E+ LHHL  EV+DNA+DE +AGY
Sbjct: 2   AAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGY 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A  + V L  +G + V D+GRGIPV  H       T+++++T LHAGGKFD+  Y ISGG
Sbjct: 62  ATTVNVVLLEDGGVEVADDGRGIPVATH--ASGIPTVDVVMTQLHAGGKFDSDAYAISGG 119

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS  L V + R    +SQ + +  PL    K+     K G+ + F  DP
Sbjct: 120 LHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLGL--KQGAPTKKTGSTVRFWADP 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY------------------ 255
            +F     +D   + +  Q  A+L+  +    + ++   ++                   
Sbjct: 178 AVFET-TEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASER 236

Query: 256 -------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
                     +   F++PGGL  +++     ++ I S I     +  G     VE A+ W
Sbjct: 237 AAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGH---EVEIAMQW 293

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
                  + ++ NTI T EGGTHE G R ALT  + KYA+  +    +  ++  DD+   
Sbjct: 294 NAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREG 353

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP ++  ++   +  
Sbjct: 354 LAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDSKVVVNKAVSS 413

Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGGSAK  R+ 
Sbjct: 414 AQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDS 473

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY K+++M DA
Sbjct: 474 MFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRYHKIVLMADA 533

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603
           DVDG HI++LLLT  ++ M  LIE  H+FL  PPL+++        +A+ +  +  +LE 
Sbjct: 534 DVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEA 593

Query: 604 FKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
             K GK KI     I R+KGLGEM A +L ET MD + R L +V ++          +  
Sbjct: 594 GLKAGK-KINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELF 648

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
           + LMG   D R  FI   A  +  + 
Sbjct: 649 SILMGEDVDARRSFITRNAKDVRFLD 674


>gi|242373650|ref|ZP_04819224.1| DNA topoisomerase (ATP-hydrolyzing) [Staphylococcus epidermidis
           M23864:W1]
 gi|242348618|gb|EES40220.1| DNA topoisomerase (ATP-hydrolyzing) [Staphylococcus epidermidis
           M23864:W1]
          Length = 664

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 234/654 (35%), Positives = 359/654 (54%), Gaps = 31/654 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  + Y   SI++LEGLE VR RPGMYIG TD++ LHHL  EV+DN++DEV+ GY + I 
Sbjct: 2   NKQNTYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEVVDNSVDEVLNGYGDEIT 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+++ +  +++ DNGRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG
Sbjct: 62  VTINKDDSISIKDNGRGMPTGIH--ASGKPTVEVIFTILHAGGKFGQGGYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS+ L V + R   I++Q F  G   +    K+    K GT++TF+PDP+IF  
Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYTQSFKDGGMPATGLNKKGKTKKTGTKVTFKPDPEIFKA 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L +  Q  A+L   +K   +  +   E+      E +++  G+K ++    E
Sbjct: 180 TTSFNFDVLSERLQESAFLLKNLKITLTDLRSGKERE-----EVYHYEEGIKEFVSYVNE 234

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            + ++              +   V+ A  + ++    I S+ N + T +GGTHE G + A
Sbjct: 235 GKEVLHDVTTFSGL----ANNIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 290

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
           +TR    YA       ++  ++  +D+      I+SV I E   +F GQTK+KL + +A+
Sbjct: 291 MTRVFNDYARRINELKEKDKNLDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTSEAR 350

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450
             V++ + +    YL +    +  L++  I+  + R   RK RE  R     K     L 
Sbjct: 351 SAVDSVVSEKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 410

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  E I  N
Sbjct: 411 GKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 470

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    ++++ ED  Y ++IIMTDAD DGAHI  LLLTFF++ M  L++  
Sbjct: 471 EEINTIIHTIGAGVGNEFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 530

Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +F+  PPL+++ +G     K  YA  ++  +K+ ++  K       + R+KGLGEM   
Sbjct: 531 RVFIALPPLYKLEKGKGKSKKVEYAWTDDELEKLQKQLGK----GFTLQRYKGLGEMNPE 586

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET M+   RTL+RV++  ++ S K     +  LMG K   R ++I+    F
Sbjct: 587 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVAPRREWIESHVEF 636


>gi|15839377|ref|NP_334414.1| DNA gyrase subunit B [Mycobacterium tuberculosis CDC1551]
 gi|308232616|ref|ZP_07416630.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu001]
 gi|308369281|ref|ZP_07417160.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu002]
 gi|308370291|ref|ZP_07420933.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu003]
 gi|308371557|ref|ZP_07425301.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu004]
 gi|308375038|ref|ZP_07442451.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu007]
 gi|308379671|ref|ZP_07487073.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu010]
 gi|308380869|ref|ZP_07491290.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu011]
 gi|308406291|ref|ZP_07495844.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu012]
 gi|13879046|gb|AAK44228.1| DNA gyrase subunit B [Mycobacterium tuberculosis CDC1551]
 gi|308213443|gb|EFO72842.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu001]
 gi|308328160|gb|EFP17011.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu002]
 gi|308332534|gb|EFP21385.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu003]
 gi|308336277|gb|EFP25128.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu004]
 gi|308347679|gb|EFP36530.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu007]
 gi|308356307|gb|EFP45158.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu010]
 gi|308360194|gb|EFP49045.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu011]
 gi|308363881|gb|EFP52732.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu012]
          Length = 686

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 253/686 (36%), Positives = 368/686 (53%), Gaps = 47/686 (6%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A   + A D Y A+SI ILEGLE VR RPGMYIG T E+ LHHL  EV+DNA+DE +AGY
Sbjct: 13  AAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGY 72

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A  + V L  +G + V D+GRGIPV  H       T+++++T LHAGGKFD+  Y ISGG
Sbjct: 73  ATTVNVVLLEDGGVEVADDGRGIPVATH--ASGIPTVDVVMTQLHAGGKFDSDAYAISGG 130

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS  L V + R    +SQ + +  PL    K+     K G+ + F  DP
Sbjct: 131 LHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLGL--KQGAPTKKTGSTVRFWADP 188

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY------------------ 255
            +F     +D   + +  Q  A+L+  +    + ++   ++                   
Sbjct: 189 AVFET-TEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASER 247

Query: 256 -------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
                     +   F++PGGL  +++     ++ I S I     +  G     VE A+ W
Sbjct: 248 AAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGH---EVEIAMQW 304

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
                  + ++ NTI T EGGTHE G R ALT  + KYA+  +    +  ++  DD+   
Sbjct: 305 NAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREG 364

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  ++   +  
Sbjct: 365 LAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSS 424

Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGGSAK  R+ 
Sbjct: 425 AQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDS 484

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY K+++M DA
Sbjct: 485 MFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRYHKIVLMADA 544

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603
           DVDG HI++LLLT  ++ M  LIE  H+FL  PPL+++        +A+ +  +  +LE 
Sbjct: 545 DVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEA 604

Query: 604 FKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
             K GK KI     I R+KGLGEM A +L ET MD + R L +V ++          +  
Sbjct: 605 GLKAGK-KINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELF 659

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
           + LMG   D R  FI   A  +  + 
Sbjct: 660 SILMGEDVDARRSFITRNAKDVRFLD 685


>gi|293366680|ref|ZP_06613356.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|38604846|sp|Q8CSN9|PARE_STAES RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|84029387|sp|Q5HPI6|PARE_STAEQ RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|291318981|gb|EFE59351.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus
           epidermidis M23864:W2(grey)]
          Length = 664

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 237/654 (36%), Positives = 361/654 (55%), Gaps = 31/654 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  +NY   SI++LEGLE VR RPGMYIG TD++ LHHL  EV+DN++DEV+ GY + I 
Sbjct: 2   NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEVVDNSVDEVLNGYGDAIT 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+++ +G +++ DNGRG+P   H     K T E+I T LHAGGKF    Y+ SGGLHGVG
Sbjct: 62  VTINQDGSISIEDNGRGMPTGIH--ASGKPTAEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS+ L V + R   I++Q F  G   +    K     K GT++TF+PD +IF  
Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYTQNFKNGGIPATGLVKTGKTKKTGTKVTFKPDSEIFKS 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L +  Q  A+L   +K   +  +   E+      E +++  G+K ++    E
Sbjct: 180 TTTFNFDILSERLQESAFLLKDLKITLTDLRSGKERE-----EIYHYEEGIKEFVSYVNE 234

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            + ++  ++ T      G     V+ A  + ++    I S+ N + T +GGTHE G + A
Sbjct: 235 GKEVLH-DVTTFAGHSNGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 290

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
           +TR   +YA        +  ++  +D+      I+SV I E   +F GQTK+KL + +A+
Sbjct: 291 MTRVFNEYARRINELKDKDKNLDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTSEAR 350

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450
             V++ + +   +YL +    +  L++  I+  + R   RK RE  R     K     L 
Sbjct: 351 SAVDSVVSEKLPYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 410

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  E I  N
Sbjct: 411 GKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 470

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    + ++ ED  Y ++IIMTDAD DGAHI  LLLTFF++ M  L++  
Sbjct: 471 EEINTIIHTIGAGVGTDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 530

Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +F+  PPL+++ +G     K  YA  +E  + + ++  K       + R+KGLGEM   
Sbjct: 531 RVFIALPPLYKLEKGKGKNKKVEYAWTDEELENLQKQLGK----GFILQRYKGLGEMNPE 586

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET M+   RTL+RV++  ++ S K     +  LMG K   R ++I++   F
Sbjct: 587 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVAPRREWIEKHVEF 636


>gi|254233410|ref|ZP_04926736.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis C]
 gi|124603203|gb|EAY61478.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis C]
          Length = 686

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 253/686 (36%), Positives = 368/686 (53%), Gaps = 47/686 (6%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A   + A D Y A+SI ILEGLE VR RPGMYIG T E+ LHHL  EV+DNA+DE +AGY
Sbjct: 13  AAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGY 72

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A  + V L  +G + V D+GRGIPV  H       T+++++T LHAGGKFD+  Y ISGG
Sbjct: 73  ATTVNVVLLEDGGVEVADDGRGIPVATH--ASGIPTVDVVMTQLHAGGKFDSDAYAISGG 130

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS  L V + R    +SQ + +  PL    K+     K G+ + F  DP
Sbjct: 131 LHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLGL--KQGAPTKKTGSTVRFWADP 188

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY------------------ 255
            +F     +D   + +  Q  A+L+  +    + ++   ++                   
Sbjct: 189 AVFET-TEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASER 247

Query: 256 -------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
                     +   F++PGGL  +++     ++ I S I     +  G     VE A+ W
Sbjct: 248 AAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGH---EVEIAMQW 304

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
                  + ++ NTI T EGGTHE G R ALT  + KYA+  +    +  ++  DD+   
Sbjct: 305 NAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREG 364

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  ++   +  
Sbjct: 365 LAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSS 424

Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGGSAK  R+ 
Sbjct: 425 AQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDS 484

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY K+++M DA
Sbjct: 485 MFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRYHKIVLMADA 544

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603
           DVDG HI++LLLT  ++ M  LIE  H+FL  PPL+++        +A+ +  +  +LE 
Sbjct: 545 DVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEA 604

Query: 604 FKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
             K GK KI     I R+KGLGEM A +L ET MD + R L +V ++          +  
Sbjct: 605 GLKAGK-KINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELF 659

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
           + LMG   D R  FI   A  +  + 
Sbjct: 660 SILMGEDVDARRTFITRNAKDVRFLD 685


>gi|282876210|ref|ZP_06285077.1| DNA topoisomerase IV, B subunit [Staphylococcus epidermidis SK135]
 gi|281295235|gb|EFA87762.1| DNA topoisomerase IV, B subunit [Staphylococcus epidermidis SK135]
 gi|329735876|gb|EGG72155.1| DNA topoisomerase IV, B subunit [Staphylococcus epidermidis VCU028]
          Length = 666

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 237/654 (36%), Positives = 361/654 (55%), Gaps = 31/654 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  +NY   SI++LEGLE VR RPGMYIG TD++ LHHL  EV+DN++DEV+ GY + I 
Sbjct: 4   NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEVVDNSVDEVLNGYGDAIT 63

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+++ +G +++ DNGRG+P   H     K T E+I T LHAGGKF    Y+ SGGLHGVG
Sbjct: 64  VTINQDGSISIEDNGRGMPTGIH--VSGKPTAEVIFTVLHAGGKFGQGGYKTSGGLHGVG 121

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS+ L V + R   I++Q F  G   +    K     K GT++TF+PD +IF  
Sbjct: 122 ASVVNALSEWLEVEIHRDGNIYTQNFKNGGIPATGLVKTGKTKKTGTKVTFKPDSEIFKS 181

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L +  Q  A+L   +K   +  +   E+      E +++  G+K ++    E
Sbjct: 182 TTTFNFDILSERLQESAFLLKDLKITLTDLRSGKERE-----EIYHYEEGIKEFVSYVNE 236

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            + ++  ++ T      G     V+ A  + ++    I S+ N + T +GGTHE G + A
Sbjct: 237 GKEVLH-DVTTFAGHSNGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 292

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
           +TR   +YA        +  ++  +D+      I+SV I E   +F GQTK+KL + +A+
Sbjct: 293 MTRVFNEYARRINELKDKDKNLDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTSEAR 352

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450
             V++ + +   +YL +    +  L++  I+  + R   RK RE  R     K     L 
Sbjct: 353 SAVDSVVSEKLPYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 412

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  E I  N
Sbjct: 413 GKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 472

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    + ++ ED  Y ++IIMTDAD DGAHI  LLLTFF++ M  L++  
Sbjct: 473 EEINTIIHTIGAGVGTDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 532

Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +F+  PPL+++ +G     K  YA  +E  + + ++  K       + R+KGLGEM   
Sbjct: 533 RVFIALPPLYKLEKGKGKNKKVEYAWTDEELENLQKQLGK----GFILQRYKGLGEMNPE 588

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET M+   RTL+RV++  ++ S K     +  LMG K   R ++I++   F
Sbjct: 589 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVAPRREWIEKHVEF 638


>gi|239930170|ref|ZP_04687123.1| DNA gyrase subunit B [Streptomyces ghanaensis ATCC 14672]
          Length = 687

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 253/684 (36%), Positives = 376/684 (54%), Gaps = 25/684 (3%)

Query: 20  SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79
           ++    +  IP +    +  A+ +Y+AS+I +LEGL+ VR RPGMYIG T E+ LHHL  
Sbjct: 10  ADSGNPNENIPSTDTGVDSEATASYNASAITVLEGLDAVRKRPGMYIGSTGERGLHHLVQ 69

Query: 80  EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139
           EV+DN++DE +AGYA+ I+V++  +G + VVDNGRGIPV   P    K  +E++LT LHA
Sbjct: 70  EVVDNSVDEALAGYADTIDVTILDDGGIRVVDNGRGIPVGIVP-SEGKPAVEVVLTVLHA 128

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKF    Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL K E  
Sbjct: 129 GGKFGGGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGYRWTQDYKLGVPTAPLAKHEAT 188

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI-------- 251
               GT +TF  DP IF     +    L +  Q  A+L+  ++   + ++E         
Sbjct: 189 EE-TGTSVTFWADPDIFET-TDYSFETLSRRFQEMAFLNKGLRINLTDERESAKATAGAD 246

Query: 252 ---AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
               ++    +   +++ GG+  +++     +             +      ++E A+ W
Sbjct: 247 EAGEDEKYEVKAVSYHYEGGIVDFVKYLNSRKGDPVHPTVIDLEAEDKDRHLSLEVAMQW 306

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMIS 365
                  + S+ N I T EGGTHE G R ALT  I KYA   +    +  ++  DD+   
Sbjct: 307 NGGYTEGVYSFANIIHTHEGGTHEEGFRAALTSLINKYARDKKLLRDKDDNLTGDDIREG 366

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              I+SV + EP+F GQTKTKL + + +  V+  + +  + +L +NP EA  ++   I  
Sbjct: 367 LTAIISVKLSEPQFEGQTKTKLGNTEVKTFVQKVVYEHLNDWLDRNPNEAADIVRKGIAA 426

Query: 426 SEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           +  R+  RK R++ R+   +    LPGKL+DC  N     E+FIVEGDSAGGSAK  RN 
Sbjct: 427 ATARVAARKARDLTRRKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNP 486

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA+LP+RGKILNV  A  ++I  NQ+I  ++ A G      +  E LRY K+I+M DA
Sbjct: 487 EYQAILPIRGKILNVEKARIDRILQNQEIQAMISAFGTGVHEDFDIERLRYHKIILMADA 546

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEE 603
           DVDG HI +LLLTF ++ M  L+E  H+FL  PPL++I  G     YA+ +  +  ++E 
Sbjct: 547 DVDGQHINTLLLTFLFRFMRPLVEAGHVFLSRPPLYKIKWGKDDFEYAYSDRERDALIEM 606

Query: 604 FKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
            ++ GK   +  + RFKGLGEM A +L+ T MD   R L +V ++          D  + 
Sbjct: 607 GRQAGKRIREDSVQRFKGLGEMNAEELRVTTMDQEHRVLGQVTLDD----AAQADDLFSV 662

Query: 662 LMGTKADERFKFIQERASFIDDVG 685
           LMG   + R +FIQ  A  +  + 
Sbjct: 663 LMGEDVEARRQFIQRNAKDVRFLD 686


>gi|27467954|ref|NP_764591.1| DNA topoisomerase IV subunit B [Staphylococcus epidermidis ATCC
           12228]
 gi|57866861|ref|YP_188504.1| DNA topoisomerase IV subunit B [Staphylococcus epidermidis RP62A]
 gi|27315499|gb|AAO04633.1|AE016747_130 topoisomerase IV subunit B [Staphylococcus epidermidis ATCC 12228]
 gi|57637519|gb|AAW54307.1| DNA topoisomerase IV, B subunit [Staphylococcus epidermidis RP62A]
 gi|329725092|gb|EGG61586.1| DNA topoisomerase IV, B subunit [Staphylococcus epidermidis VCU144]
 gi|329736686|gb|EGG72952.1| DNA topoisomerase IV, B subunit [Staphylococcus epidermidis VCU045]
          Length = 666

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 237/654 (36%), Positives = 361/654 (55%), Gaps = 31/654 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  +NY   SI++LEGLE VR RPGMYIG TD++ LHHL  EV+DN++DEV+ GY + I 
Sbjct: 4   NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEVVDNSVDEVLNGYGDAIT 63

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+++ +G +++ DNGRG+P   H     K T E+I T LHAGGKF    Y+ SGGLHGVG
Sbjct: 64  VTINQDGSISIEDNGRGMPTGIH--ASGKPTAEVIFTVLHAGGKFGQGGYKTSGGLHGVG 121

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS+ L V + R   I++Q F  G   +    K     K GT++TF+PD +IF  
Sbjct: 122 ASVVNALSEWLEVEIHRDGNIYTQNFKNGGIPATGLVKTGKTKKTGTKVTFKPDSEIFKS 181

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L +  Q  A+L   +K   +  +   E+      E +++  G+K ++    E
Sbjct: 182 TTTFNFDILSERLQESAFLLKDLKITLTDLRSGKERE-----EIYHYEEGIKEFVSYVNE 236

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            + ++  ++ T      G     V+ A  + ++    I S+ N + T +GGTHE G + A
Sbjct: 237 GKEVLH-DVTTFAGHSNGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 292

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
           +TR   +YA        +  ++  +D+      I+SV I E   +F GQTK+KL + +A+
Sbjct: 293 MTRVFNEYARRINELKDKDKNLDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTSEAR 352

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450
             V++ + +   +YL +    +  L++  I+  + R   RK RE  R     K     L 
Sbjct: 353 SAVDSVVSEKLPYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 412

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  E I  N
Sbjct: 413 GKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 472

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    + ++ ED  Y ++IIMTDAD DGAHI  LLLTFF++ M  L++  
Sbjct: 473 EEINTIIHTIGAGVGTDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 532

Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +F+  PPL+++ +G     K  YA  +E  + + ++  K       + R+KGLGEM   
Sbjct: 533 RVFIALPPLYKLEKGKGKNKKVEYAWTDEELENLQKQLGK----GFILQRYKGLGEMNPE 588

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET M+   RTL+RV++  ++ S K     +  LMG K   R ++I++   F
Sbjct: 589 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVAPRREWIEKHVEF 638


>gi|227877545|ref|ZP_03995605.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus crispatus
           JV-V01]
 gi|256849618|ref|ZP_05555050.1| subunit B [Lactobacillus crispatus MV-1A-US]
 gi|227862844|gb|EEJ70303.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus crispatus
           JV-V01]
 gi|256713734|gb|EEU28723.1| subunit B [Lactobacillus crispatus MV-1A-US]
          Length = 654

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 247/668 (36%), Positives = 367/668 (54%), Gaps = 20/668 (2%)

Query: 24  KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVID 83
             + +         +  +D Y+AS I++L GLE VR RPGMYIG T  + LHHL  E+ID
Sbjct: 2   ADNSKENLEKVKKYEKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEIID 61

Query: 84  NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143
           N++DE +AG+A  IEV+++ +G +TV D+GRGIPV+   K   +  LE + T LHAGGKF
Sbjct: 62  NSIDERLAGFATKIEVTINEDGSVTVQDDGRGIPVDIQEK-TGRPALETVFTVLHAGGKF 120

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NK 202
               Y++SGGLHGVG SVVNALS +L VTV R +  +   F  G     +++   V  ++
Sbjct: 121 GGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDSKKYFIDFDHGRVKDEMKQIGTVPLDE 180

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT + F PDP IF +   FD   L    +  A+L+  +   ++  ++        E + 
Sbjct: 181 HGTIVHFYPDPDIFTETIVFDDKILKNRIRELAFLNKGLTLTFTDKRK-----DTAETDV 235

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           + F GG+K Y+    + + ++  +    ++   G     VE A+ +       + ++ N 
Sbjct: 236 YKFEGGIKEYVAFLNKGQEVLFDDPIYVESTYNGI---DVEVALQYTNGYKTTLMTFANN 292

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I T EGG HE+G + ALTR +  YA  ++    +  ++  +D+      I+SV    P+F
Sbjct: 293 IHTYEGGMHEAGFKTALTRVVNDYAHKSKILKDKDDNLSGEDIREGMTAIVSVKHPSPQF 352

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREV 438
            GQTKTKL + DA+  V+ A  + F  +L++NP    K++E   +        +R +   
Sbjct: 353 EGQTKTKLGNSDARTAVDKAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVT 412

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            +K+ +    LPGKLAD + N    +ELFIVEG+SAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 413 RKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILN 472

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  NQ+I  L  ALG    + +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 473 VEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIRTLLLTL 532

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY  M  +I++ ++++  PPL+++ QG    Y   +E     L   +     K  + R+K
Sbjct: 533 FYNYMRPMIDKGYVYIAKPPLYQVRQGKVVRYLDTDEELHDYLGSLQPS--PKPTVQRYK 590

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           GLGEM   QL ET M+   R L RV         KD       LMG +   R  FIQ+ A
Sbjct: 591 GLGEMDPEQLWETTMNPENRRLDRVSPEY----AKDADAVFELLMGNEVSPRRDFIQKNA 646

Query: 679 SFIDDVGT 686
            +++++  
Sbjct: 647 KYVENLDA 654


>gi|70726555|ref|YP_253469.1| DNA topoisomerase IV subunit B [Staphylococcus haemolyticus
           JCSC1435]
 gi|68447279|dbj|BAE04863.1| topoisomerase IV subunit B [Staphylococcus haemolyticus JCSC1435]
          Length = 666

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 235/656 (35%), Positives = 358/656 (54%), Gaps = 31/656 (4%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
               S++Y   SI++LEGLE VR RPGMYIG TD++ LHHL  EV+DN++DEV+ GY N 
Sbjct: 2   ATKNSNHYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEVVDNSVDEVLNGYGNE 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V+++ +  +++ DNGRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHG
Sbjct: 62  INVTINQDNSISIEDNGRGMPSGMH--ASGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHG 119

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS+ L V + R   I+ Q F  G   +    K     K GT++TF+PDP+IF
Sbjct: 120 VGASVVNALSEWLEVEIHRDGNIYKQSFKNGGVPASGLVKSGKTKKTGTKVTFKPDPEIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                F+   L +  Q  A+L   +K      +   E+      + +++  G+K ++   
Sbjct: 180 KATTTFNFETLSERLQESAFLLKNLKITLKDLRNGKERE-----DVYHYEEGIKEFVSYV 234

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            E + ++             ++   V+ A  + ++    I S+ N + T +GGTHE G +
Sbjct: 235 NEGKEVLHDVTMFTGA----SNGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFK 290

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLD 391
            A+TR    YA       ++  ++  +D+      ++SV I E   +F GQTK+KL + +
Sbjct: 291 TAMTRVFNDYARRINELKEKDKNLDGNDIREGLTAVISVRIPEELLQFEGQTKSKLGTSE 350

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LR 448
           A+  V++ + D   +YL +    +  L++  I+  + R   RK RE  R     K     
Sbjct: 351 ARSAVDSVVSDKLPYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTL 410

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           L GKL           EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  E I 
Sbjct: 411 LSGKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIF 470

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            N++I  ++  +G    + ++ ED  Y ++IIMTDAD DGAHI  LLLTFF++ M  L++
Sbjct: 471 KNEEINTIIHTIGAGVGNDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQ 530

Query: 569 QKHLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
              +F+  PPL+++ +G     +  YA  ++  +K+ ++  K       + R+KGLGEM 
Sbjct: 531 AGRVFIALPPLYKLEKGKGKSKQVEYAWTDDELEKLQKKLGK----GFMLQRYKGLGEMN 586

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
             QL ET M+   RTL+RV+I  ++ S K     +  LMG K   R ++I+    F
Sbjct: 587 PEQLWETTMNPETRTLIRVQIEDEMRSSKR----VTTLMGDKVAPRREWIESHVEF 638


>gi|118470567|ref|YP_884428.1| DNA gyrase subunit B [Mycobacterium smegmatis str. MC2 155]
 gi|152032506|sp|A0QNE0|GYRB_MYCS2 RecName: Full=DNA gyrase subunit B
 gi|152032507|sp|P0C559|GYRB_MYCSM RecName: Full=DNA gyrase subunit B
 gi|118171854|gb|ABK72750.1| DNA gyrase, B subunit [Mycobacterium smegmatis str. MC2 155]
          Length = 675

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 250/686 (36%), Positives = 367/686 (53%), Gaps = 47/686 (6%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A    +A   Y A SI ILEGLE VR RPGMYIG T E+ LHHL  EV+DNA+DE +AG+
Sbjct: 2   AAQKNNAPKEYGADSITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGF 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A  ++V +  +G + V D+GRGIPVE H       T+++++T LHAGGKFD  TY +SGG
Sbjct: 62  ATRVDVKIHADGSVEVRDDGRGIPVEMH--ATGMPTIDVVMTQLHAGGKFDGETYAVSGG 119

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS  L  TV R    + Q + R +P     K+     + GT I F  DP
Sbjct: 120 LHGVGVSVVNALSTRLEATVLRDGYEWFQYYDRSVPGKL--KQGGETKETGTTIRFWADP 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP--------------- 258
           +IF     ++   + +  Q  A+L+  +    + ++  AE+                   
Sbjct: 178 EIFET-TDYNFETVARRLQEMAFLNKGLTIELTDERVTAEEVVDDVVKDTAEAPKTADEK 236

Query: 259 ----------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
                     +   F++PGGL  Y++     ++ I   I     +  G     VE A+ W
Sbjct: 237 AAEATGPSKVKHRVFHYPGGLVDYVKHINRTKTPIQQSIIDFDGKGPGH---EVEIAMQW 293

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMIS 365
                  + ++ NTI T EGGTHE G R ALT  + +Y   +     +  ++  DD+   
Sbjct: 294 NAGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNRYAKDKKLLKDKDPNLTGDDIREG 353

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP EA  ++   +  
Sbjct: 354 LAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKICNEQLQHWFEANPAEAKTVVNKAVSS 413

Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGGSAK  R+ 
Sbjct: 414 AQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKSGRDS 473

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY K+++M DA
Sbjct: 474 MFQAILPLRGKIINVEKARIDRVLKNTEVQSIITALGTGIHDEFDISKLRYHKIVLMADA 533

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603
           DVDG HI++LLLT  ++ M  L+E  H+FL  PPL+++     +  +A+ +  +  +LE 
Sbjct: 534 DVDGQHISTLLLTLLFRFMKPLVENGHIFLAQPPLYKLKWQRSEPEFAYSDRERDGLLEA 593

Query: 604 FKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
            +  GK KI     I R+KGLGEM A +L ET MD + R L +V ++          +  
Sbjct: 594 GRAAGK-KINVDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELF 648

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
           + LMG   + R  FI   A  +  + 
Sbjct: 649 SILMGEDVEARRSFITRNAKDVRFLD 674


>gi|308234055|ref|ZP_07664792.1| DNA gyrase, B subunit [Atopobium vaginae DSM 15829]
          Length = 648

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 256/656 (39%), Positives = 367/656 (55%), Gaps = 26/656 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y  + I++LEGL+PVR RPGMYIG T    LHHL  E++DN++DE +AGY   I V +
Sbjct: 6   SSYGGNEIKVLEGLDPVRKRPGMYIGTTSASGLHHLVWEIVDNSVDEAMAGYCTSINVIV 65

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  ++V DNGRGIPVE HP+     TLE++LT LHAGGKFDN+ Y++SGGLHGVG+SV
Sbjct: 66  HPDNSISVEDNGRGIPVEMHPQ-KKIPTLEVVLTILHAGGKFDNAAYKVSGGLHGVGVSV 124

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  L   V+R   IF  +F RG     + +        GT ITF PD  IF     
Sbjct: 125 VNALSKRLIARVSRDGGIFEMEFKRGKVTKKMTRVGDSS-HTGTTITFWPDDTIFETTT- 182

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L    Q  A+L+  +    + ++E       P KEEF + GG+  +++   E ++
Sbjct: 183 YNFDTLHDRLQETAFLNKNLHISLTDEREE-----TPRKEEFCYSGGIVDFVKYLNEEKT 237

Query: 282 L----ISSEIFTGKTEKKG--THRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
           +           G +        RG VE +I W     E   S+ N I TDEGG H  G 
Sbjct: 238 ILPGLNDPIYIEGSSAPDTPLNQRGEVEVSIQWNTTYSEHVMSFANDIYTDEGGMHLEGF 297

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALT+ I  YA   +   ++  ++  DD+      I+SV + +P+F GQTK KL S   
Sbjct: 298 RSALTKTINDYARSHKLLKEKEANLTGDDIREGLCAIISVKLPDPQFEGQTKAKLGSSYM 357

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPG 451
           +      +      YL ++P +A ++ +   + ++ RL  ++ R+V R+  +     LPG
Sbjct: 358 RTLTNKIVGAGLTEYLEEHPNQAKEIFKKAFQAAKGRLAAQRARQVARRKGLLESASLPG 417

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS   A  TELFIVEGDSAGGSAK AR+RS QAVLPLRGKILNV     ++  +++
Sbjct: 418 KLADCSVRDAQMTELFIVEGDSAGGSAKMARDRSIQAVLPLRGKILNVERVQQDRALSSE 477

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
            I  L+ A+G     ++  E  RY K++IMTDADVDGAHI  LLLTFFY+ M  L++  +
Sbjct: 478 SITSLITAIGTGVGKEFNIEKARYHKIVIMTDADVDGAHIRILLLTFFYRYMKPLVDAGY 537

Query: 572 LFLISPPLFRITQGTKSVY--AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +++  PPL++I    K      + +E     LE  +     K  + R+KGLGEM   QL 
Sbjct: 538 IYVAQPPLYQIKAKGKKYGKYLYTDEEL--ALEAKQFEDSSKYSVQRYKGLGEMDPEQLW 595

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            T M+   R +LRV ++      ++ + ++  LMGT+ ++R  FIQ  A  +  + 
Sbjct: 596 STTMEPKNRIMLRVTVDD----AREAERAVANLMGTQVEKRKDFIQTHAKDVRFLD 647


>gi|262046286|ref|ZP_06019249.1| DNA gyrase, B subunit [Lactobacillus crispatus MV-3A-US]
 gi|295691867|ref|YP_003600477.1| DNA gyrase, b subunit [Lactobacillus crispatus ST1]
 gi|312977114|ref|ZP_07788863.1| DNA gyrase, B subunit [Lactobacillus crispatus CTV-05]
 gi|260573616|gb|EEX30173.1| DNA gyrase, B subunit [Lactobacillus crispatus MV-3A-US]
 gi|295029973|emb|CBL49452.1| DNA gyrase, B subunit [Lactobacillus crispatus ST1]
 gi|310896442|gb|EFQ45507.1| DNA gyrase, B subunit [Lactobacillus crispatus CTV-05]
          Length = 654

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 247/668 (36%), Positives = 366/668 (54%), Gaps = 20/668 (2%)

Query: 24  KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVID 83
             + +         +  +D Y+AS I++L GLE VR RPGMYIG T  + LHHL  E+ID
Sbjct: 2   ADNSKENLEKVKKYEKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEIID 61

Query: 84  NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143
           N++DE +AG+A  IEV+++ +G +TV D+GRGIPV+   K   +  LE + T LHAGGKF
Sbjct: 62  NSIDERLAGFATKIEVTINEDGSVTVQDDGRGIPVDIQEK-TGRPALETVFTVLHAGGKF 120

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NK 202
               Y++SGGLHGVG SVVNALS +L VTV R    +   F  G     +++   V  ++
Sbjct: 121 GGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDGKKYFIDFDHGRVKDEMKQIGTVPLDE 180

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT + F PDP IF +   FD   L    +  A+L+  +   ++  ++        E + 
Sbjct: 181 HGTIVHFYPDPDIFTETIVFDDKILKNRIRELAFLNKGLTLTFTDKRK-----DTAETDV 235

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           + F GG+K Y+    + + ++  +    ++   G     VE A+ +       + ++ N 
Sbjct: 236 YKFEGGIKEYVAFLNKGQEVLFDDPIYVESTYNGI---DVEVALQYTNGYKTTLMTFANN 292

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I T EGG HE+G + ALTR +  YA  ++    +  ++  +D+      I+SV    P+F
Sbjct: 293 IHTYEGGMHEAGFKTALTRVVNDYAHKSKILKDKDDNLSGEDIREGMTAIVSVKHPSPQF 352

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREV 438
            GQTKTKL + DA+  V+ A  + F  +L++NP    K++E   +        +R +   
Sbjct: 353 EGQTKTKLGNSDARTAVDKAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVT 412

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            +K+ +    LPGKLAD + N    +ELFIVEG+SAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 413 RKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILN 472

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  NQ+I  L  ALG    + +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 473 VEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIRTLLLTL 532

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY  M  +I++ ++++  PPL+++ QG    Y   +E     L   +     K  + R+K
Sbjct: 533 FYNYMRPMIDKGYVYIAKPPLYQVRQGKVVRYLDTDEELHDYLGSLQPS--PKPTVQRYK 590

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           GLGEM   QL ET M+   R L RV         KD       LMG +   R  FIQ+ A
Sbjct: 591 GLGEMDPEQLWETTMNPENRRLDRVSPEY----AKDADAVFELLMGNEVSPRRDFIQKNA 646

Query: 679 SFIDDVGT 686
            +++++  
Sbjct: 647 KYVENLDA 654


>gi|254417729|ref|ZP_05031453.1| DNA topoisomerase IV, B subunit [Brevundimonas sp. BAL3]
 gi|196183906|gb|EDX78882.1| DNA topoisomerase IV, B subunit [Brevundimonas sp. BAL3]
          Length = 699

 Score =  589 bits (1518), Expect = e-166,   Method: Composition-based stats.
 Identities = 357/708 (50%), Positives = 466/708 (65%), Gaps = 33/708 (4%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKL-----------------KKSGEIPDSPAFANQSASDN 43
           M DD    F   P   +  + K                          +       A + 
Sbjct: 1   MADDLF-AFDDTPEAPKPEAPKPVAVTPPQAAPAPAPKPVPTPVAAAPTAPAPTAGAQNA 59

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y ASSI +LEGLEPVR RPGMYIGGTDE+ALHHLF+EV+DNAMDE +A +A LI V LD 
Sbjct: 60  YSASSIEVLEGLEPVRKRPGMYIGGTDERALHHLFAEVLDNAMDEAVARHAKLITVELDA 119

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G+L+V D+GRGIPV+ HPK P KS LE+++T LH+GGKF    YE SGGLHGVG+SVVN
Sbjct: 120 DGYLSVRDDGRGIPVDPHPKHPGKSALEVVMTVLHSGGKFSGKAYETSGGLHGVGVSVVN 179

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS+ L VTV R    + Q FSRG  L P+++ +  R  RGT+I F+PD +IFG  A F 
Sbjct: 180 ALSEHLDVTVWRDGFEWKQSFSRGNVLGPIQQVQPSRK-RGTQIRFKPDDEIFGMGAAFK 238

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
            ARL +M +SKAYL   V+  W+C  E       P +   +FPGGL   L  ++     +
Sbjct: 239 PARLFRMARSKAYLFRGVEIKWTCAPERITDA-TPTQALLHFPGGLADALIDRIGELETV 297

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWC-----EENPEITSYCNTILTDEGGTHESGLRVAL 338
           +   F G+ E++G   G  EWA+ W      E +  I SYCNT+ T +GGTHE+G R AL
Sbjct: 298 TP-TFAGRAERQGEA-GAFEWAVTWSPIGFGEADGFIQSYCNTVSTPDGGTHEAGFRAAL 355

Query: 339 TRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +G+K Y ELT  KRA  I ++D+  +A  ++SVFIR PEF GQTK +L S +  R VE 
Sbjct: 356 VKGLKSYGELTNEKRAAIITAEDVTANAGALISVFIRNPEFQGQTKDRLSSPEGARLVEQ 415

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            LRDP DH+L ++P +A  LL +V++R+E+RLRRRK +EV R  A RKLRLPGKL+DCS+
Sbjct: 416 LLRDPLDHWLTESPKQANALLGFVVDRAEDRLRRRKDKEVQRAAATRKLRLPGKLSDCSR 475

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
             A GTELFIVEGDSAGGSAKQAR+R+ QA+LPLRGKILNVASA ++K+R N ++ DL  
Sbjct: 476 QSAQGTELFIVEGDSAGGSAKQARDRTTQAILPLRGKILNVASATADKLRQNIELSDLAL 535

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG +  +++  +DLRYE+++IMTDADVDGAHIA+LL+TFFY+ M + I Q  +F+  PP
Sbjct: 536 ALGVQPGNRFNIDDLRYERIVIMTDADVDGAHIAALLITFFYRVMPETIRQGRVFMALPP 595

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+RI+ G  S YA D+ H+ ++L    K    K EI RFKGLGEM+ASQLKET MD  KR
Sbjct: 596 LYRISAGPLSEYARDDAHRDELLATVFK--GKKTEIGRFKGLGEMMASQLKETTMDPKKR 653

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI-DDVG 685
           TL R+ +     S++D    + +LMG +AD RF+FIQE A F+ +D+ 
Sbjct: 654 TLARITVPDAETSVED---LVERLMGKRADARFQFIQENAQFVKEDLD 698


>gi|116617179|ref|YP_817550.1| DNA gyrase subunit B [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096026|gb|ABJ61177.1| DNA gyrase subunit B [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 672

 Score =  589 bits (1518), Expect = e-166,   Method: Composition-based stats.
 Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 22/659 (3%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A    + + +Y+A  I++LEGLE VR RPGMYIG T  + LHHL  E++DN +DE +AG+
Sbjct: 28  ASTVDAKAGDYNADQIQVLEGLEAVRKRPGMYIGTTTAQGLHHLVWEIVDNGIDEALAGF 87

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ I V+++ +  +TV D+GRGIPV+   K   K  LE + T LHAGGKF    Y++SGG
Sbjct: 88  ASHITVTIEKDNSITVTDDGRGIPVDIQTK-TGKPALETVFTVLHAGGKFGGGGYKVSGG 146

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPD 212
           LHGVG SVVNALS +L V V R N ++   F  G +  +     E+   +RGT + F+PD
Sbjct: 147 LHGVGASVVNALSTDLDVKVVRDNKVYYMDFKVGRVHTTMRTLDEEPTIERGTIVHFKPD 206

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
             IF +   ++   LL   +  A+L+  ++   +  +        P KE F+F GG+K Y
Sbjct: 207 TDIFRETTTYNYKTLLTRVRELAFLNKGLRISIADKR-----LEEPIKESFHFEGGIKEY 261

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHE 331
           +Q   E++ +I  E    + E+ G     VE A+ +  +    + ++ N I T EGGTHE
Sbjct: 262 VQYLNEDKQVIFPEPVYVEGEENGI---VVEAALQYTTDIKDSLRTFANNINTYEGGTHE 318

Query: 332 SGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G + ALTR I  YA  +   +    S+  +D+      I+S+   +P+F GQTKTKL +
Sbjct: 319 TGFKTALTRVINDYARKSGQIKDGAESLTGEDVREGMTAIVSIKHPDPQFEGQTKTKLGN 378

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLR 448
            DA++  +    + F  ++++NP  A +++E  +   + RL  ++ RE+  +++ +    
Sbjct: 379 SDARQATDRMFSETFSRFMMENPNVAKQIVEKGVLAQKARLAAKRAREMTRKQSGLEIGN 438

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLAD + N    +ELFIVEGDSAGGSAKQ RNR  QA+LP+RGKILNV  A  E++ 
Sbjct: 439 LPGKLADNTSNDPAISELFIVEGDSAGGSAKQGRNRVTQAILPIRGKILNVGKASLERVL 498

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            N++I  L  A+G      +  E   Y KVIIMTDADVDGAHI +LLLT FY+ M  L++
Sbjct: 499 ANEEIRSLFTAMGTGFGDDFNVEKANYHKVIIMTDADVDGAHIRTLLLTLFYRYMRPLVD 558

Query: 569 QKHLFLISPPLFRIT--QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
             ++++  PPL+ +         Y   +E  +  L +   + K K  + R+KGLGEM   
Sbjct: 559 AGYIYIAQPPLYGVALGNNKSMTYLDSDEELESYLSQLPSNVKPK--VQRYKGLGEMDYD 616

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           QL +T MDA  R LLRV    D    ++ +  I+ LMG     R KFI++ A F++++ 
Sbjct: 617 QLADTTMDAQNRRLLRV----DPADAEEAEAVIDMLMGGDVPPRRKFIEDNAVFVENLD 671


>gi|319937326|ref|ZP_08011733.1| DNA topoisomerase parE [Coprobacillus sp. 29_1]
 gi|319807692|gb|EFW04285.1| DNA topoisomerase parE [Coprobacillus sp. 29_1]
          Length = 642

 Score =  589 bits (1518), Expect = e-166,   Method: Composition-based stats.
 Identities = 240/653 (36%), Positives = 359/653 (54%), Gaps = 34/653 (5%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
            S++YD S+I+ILEGLE VR RPGMYIG TD + LHHL  E++DNA+DE +AG+ N I V
Sbjct: 2   KSNHYDESNIQILEGLEAVRKRPGMYIGSTDYRGLHHLVWEIVDNAIDESLAGFGNKITV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGVG 158
           ++  +  + V D GRG+P   H     K T E+ILT LHAGGKF ++  Y+ SGGLHGVG
Sbjct: 62  TIGSDNTIKVEDEGRGMPTGLH--ASGKPTTEVILTILHAGGKFSEDGGYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS+ L VTV R   I  QKF  G  +    K     N+ GT I F+P+ +IF  
Sbjct: 120 SSVVNALSEWLEVTVYRDGKIHQQKFEDGAKIISPLKVIGKTNRTGTTIHFKPNKEIFST 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+ + + +  +  A+L   ++     ++         + E F +  GL+ ++     
Sbjct: 180 -IDFNYSTICERLRESAFLLKGIEMIVIDER-------TGKHETFQYENGLEAFIDYLNY 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVA 337
            + ++   +         ++   VE A  + E   E    + N + T +GGTHE+G R  
Sbjct: 232 EKKVLHKTVSF----DDESNPIEVEIAFQFTEGYQENLISFVNLVRTGDGGTHETGFRSG 287

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
            T+   +YA        +  ++   D+     GI+SV I E   +F GQTK+KL S +A+
Sbjct: 288 FTKVFNEYARKYGLLKTKDKNLEGADVREGLTGIISVKIPESLLQFEGQTKSKLGSPEAR 347

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP--G 451
             VEN + +  +++L +N   A +L+  +I+ ++ R   RK RE  RK    K+     G
Sbjct: 348 NIVENVVYEQINYFLEENKDVANQLVNKMIKAAQARNAARKAREEARKGKGNKVEKILSG 407

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLA          EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A    I  N+
Sbjct: 408 KLAPAQSKDKKKKELYLVEGDSAGGSAKQGRDRKYQAILPLRGKVVNTEKAAMADILKNE 467

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  +D  Y KVIIMTDAD DGAHI  LLLTFFY+ M  LI+   
Sbjct: 468 EISTIINTVGAGVGADFNADDSNYAKVIIMTDADTDGAHIQVLLLTFFYRYMRGLIQSGR 527

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++       S+YA D++  +   ++  +       + R+KGLGEM A Q
Sbjct: 528 VYIAMPPLYKVSKKNGKHEDSLYAWDDDELEDAKKKIGR----GYGVQRYKGLGEMNADQ 583

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL++V I          +  ++ LMG K + R ++I++   F
Sbjct: 584 LWETTMNPETRTLIQVSIED----AALVERRVSVLMGDKVEPRREWIEDNVQF 632


>gi|257887681|ref|ZP_05667334.1| gram positive topoisomerase IV [Enterococcus faecium 1,141,733]
 gi|257896175|ref|ZP_05675828.1| gram positive topoisomerase IV [Enterococcus faecium Com12]
 gi|257823735|gb|EEV50667.1| gram positive topoisomerase IV [Enterococcus faecium 1,141,733]
 gi|257832740|gb|EEV59161.1| gram positive topoisomerase IV [Enterococcus faecium Com12]
          Length = 665

 Score =  589 bits (1518), Expect = e-166,   Method: Composition-based stats.
 Identities = 244/642 (38%), Positives = 350/642 (54%), Gaps = 33/642 (5%)

Query: 52  LEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVD 111
           +EGLE VR RPGMYIG TD + LHHL  E++DNA+DE ++GY + I+V++  +  +TV D
Sbjct: 1   MEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGSEIDVTIHEDNSITVAD 60

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171
           +GRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHGVG SVVNALS  L V
Sbjct: 61  SGRGMPVGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSKWLTV 118

Query: 172 TVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           T+ R    + QKF  G  P   L+K  K +   GT + F PD  IF     F    L + 
Sbjct: 119 TIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTIVHFLPDDTIFSTT-KFSYEILAER 177

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  A+L   VK   S  +        P KE F++  G+K ++    E +  ++  +   
Sbjct: 178 LRESAFLLKGVKISLSDLR-----GEEPVKEVFHYEEGIKEFVDYLNEEKDTLTPVV-YF 231

Query: 291 KTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             EK+G     VE A  + +   E   S+ N + T +GGTHE+G++ A+T+   +YA   
Sbjct: 232 SGEKEGI---EVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGMKAAMTKSYNEYARKV 288

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFD 405
               +R  ++   D       +LS+ + E   +F GQTK KL +  A+  V+N + +   
Sbjct: 289 GLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTPVARTVVDNVISEQMG 348

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLADCSQNIAH 462
            YL +N   +  L+   I+  E R   RK RE +R    RK     L GKL         
Sbjct: 349 FYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPK 408

Query: 463 GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
             EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I  N++I  ++  +G 
Sbjct: 409 KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGA 468

Query: 523 RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI 582
               ++  ED  Y+KVIIMTDAD DGAHI  LLLTFFY+ M  LIE   +++  PPL+++
Sbjct: 469 GVGPEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKV 528

Query: 583 TQG---TKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           ++G    + + YA  ++    ++++  K       + R+KGLGEM A QL ET MD   R
Sbjct: 529 SKGQGKKQVIEYAWTDDELAAMIKKVGK----GYMLQRYKGLGEMNAEQLWETTMDPTSR 584

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           TL+RV I+         +  +  LMG K + R K+I+    F
Sbjct: 585 TLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIENHVQF 622


>gi|312874887|ref|ZP_07734906.1| DNA gyrase, B subunit [Lactobacillus iners LEAF 2053A-b]
 gi|311089632|gb|EFQ48057.1| DNA gyrase, B subunit [Lactobacillus iners LEAF 2053A-b]
          Length = 653

 Score =  589 bits (1518), Expect = e-166,   Method: Composition-based stats.
 Identities = 246/658 (37%), Positives = 371/658 (56%), Gaps = 20/658 (3%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A   +  ++ Y+AS I++L GLE VR RPGMYIG T  + LHHL  E+IDN++DE +AG+
Sbjct: 11  ALNFEKRAEKYNASQIQVLGGLEAVRKRPGMYIGNTSIQGLHHLVWEIIDNSIDEKLAGF 70

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A  IE++++ +G +TV D+GRGIPV+   K   +S LE + T LHAGGKF    Y++SGG
Sbjct: 71  ATKIEITVNEDGSVTVEDDGRGIPVDIQKK-TGRSALETVFTVLHAGGKFGGGGYKVSGG 129

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPD 212
           LHGVG SVVNALS +L+V V R    +   F+ G     + +  +V   + GT + F PD
Sbjct: 130 LHGVGASVVNALSTKLNVIVMRDGKKYCIDFNHGRVEQEVHEVGEVPLTQHGTIVRFYPD 189

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P IF +   FD   L    +  A+L+  +K  ++  ++        EK+ ++F GG+K Y
Sbjct: 190 PDIFTETTVFDDRILKNRIRELAFLNKGLKLTFTDKRKN-----TAEKDIYHFEGGIKEY 244

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           +    +   ++       + +  G     VE ++ +       + ++ N I T EGG HE
Sbjct: 245 VSFLNQKEQVLFEPPVYVEGDYDGI---NVEASLQYITGYKSTLLTFANNIHTYEGGMHE 301

Query: 332 SGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           SG + ALTR +  YA   +  +    ++  +D+      ++S+    P+F GQTKTKL +
Sbjct: 302 SGFKTALTRVVNDYARKAKILKDNDDNLSGEDIREGMTAVISIKHPNPQFEGQTKTKLGN 361

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLR 448
            DA+  V+ A  D F  +L++NP    K++E   +        +R +    +K+ +    
Sbjct: 362 SDARAAVDKAFSDTFSKFLLENPQVGRKIVEKGQLAARARIAAKRAREVTRKKSGLEIAN 421

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLAD + N    +ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I 
Sbjct: 422 LPGKLADNTSNDPKISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRIL 481

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            NQ+I  +  ALG    + +     RY K+IIMTDADVDGAHI +LLLT FY+ M  +I+
Sbjct: 482 ANQEIRTIFTALGTGFGADFDINKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMKPMIK 541

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             ++++  PPL+++ QG    Y   +E     L   +     K  + R+KGLGEM   QL
Sbjct: 542 AGYVYIARPPLYQVRQGKIIKYLDTDEELHDYLGTLQPS--PKPIVQRYKGLGEMDPEQL 599

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
            ET M+   R L RV    D    +D +++   LMG +   R +FI++ A +++++  
Sbjct: 600 WETTMNPENRRLDRV----DPEDAEDAEEAFEMLMGNEVGPRREFIEQNAKYVENLDA 653


>gi|259500773|ref|ZP_05743675.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus iners
           DSM 13335]
 gi|302190776|ref|ZP_07267030.1| DNA gyrase, B subunit [Lactobacillus iners AB-1]
 gi|309804063|ref|ZP_07698144.1| DNA gyrase, B subunit [Lactobacillus iners LactinV 11V1-d]
 gi|309805911|ref|ZP_07699943.1| DNA gyrase, B subunit [Lactobacillus iners LactinV 03V1-b]
 gi|309807813|ref|ZP_07701745.1| DNA gyrase, B subunit [Lactobacillus iners LactinV 01V1-a]
 gi|312871188|ref|ZP_07731286.1| DNA gyrase, B subunit [Lactobacillus iners LEAF 3008A-a]
 gi|312873296|ref|ZP_07733351.1| DNA gyrase, B subunit [Lactobacillus iners LEAF 2052A-d]
 gi|315654135|ref|ZP_07907051.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus iners
           ATCC 55195]
 gi|325912201|ref|ZP_08174598.1| DNA gyrase, B subunit [Lactobacillus iners UPII 143-D]
 gi|325913628|ref|ZP_08175990.1| DNA gyrase, B subunit [Lactobacillus iners UPII 60-B]
 gi|329919730|ref|ZP_08276681.1| DNA gyrase, B subunit [Lactobacillus iners SPIN 1401G]
 gi|259167467|gb|EEW51962.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus iners
           DSM 13335]
 gi|308163831|gb|EFO66097.1| DNA gyrase, B subunit [Lactobacillus iners LactinV 11V1-d]
 gi|308167687|gb|EFO69834.1| DNA gyrase, B subunit [Lactobacillus iners LactinV 03V1-b]
 gi|308168915|gb|EFO71001.1| DNA gyrase, B subunit [Lactobacillus iners LactinV 01V1-a]
 gi|311091176|gb|EFQ49565.1| DNA gyrase, B subunit [Lactobacillus iners LEAF 2052A-d]
 gi|311093202|gb|EFQ51548.1| DNA gyrase, B subunit [Lactobacillus iners LEAF 3008A-a]
 gi|315488831|gb|EFU78477.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus iners
           ATCC 55195]
 gi|325475860|gb|EGC79029.1| DNA gyrase, B subunit [Lactobacillus iners UPII 143-D]
 gi|325476987|gb|EGC80137.1| DNA gyrase, B subunit [Lactobacillus iners UPII 60-B]
 gi|328937077|gb|EGG33505.1| DNA gyrase, B subunit [Lactobacillus iners SPIN 1401G]
          Length = 653

 Score =  589 bits (1518), Expect = e-166,   Method: Composition-based stats.
 Identities = 246/658 (37%), Positives = 371/658 (56%), Gaps = 20/658 (3%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A   +  ++ Y+AS I++L GLE VR RPGMYIG T  + LHHL  E+IDN++DE +AG+
Sbjct: 11  ALNFEKRAEKYNASQIQVLGGLEAVRKRPGMYIGNTSIQGLHHLVWEIIDNSIDEKLAGF 70

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A  IE++++ +G +TV D+GRGIPV+   K   +S LE + T LHAGGKF    Y++SGG
Sbjct: 71  ATKIEITVNEDGSVTVEDDGRGIPVDIQKK-TGRSALETVFTVLHAGGKFGGGGYKVSGG 129

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPD 212
           LHGVG SVVNALS +L+V V R    +   F+ G     + +  +V   + GT + F PD
Sbjct: 130 LHGVGASVVNALSTKLNVIVMRDGKKYCIDFNHGRVEQEVHEVGEVPLTQHGTIVRFYPD 189

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P IF +   FD   L    +  A+L+  +K  ++  ++        EK+ ++F GG+K Y
Sbjct: 190 PDIFTETTVFDDRILKNRIRELAFLNKGLKLTFTDKRKN-----TAEKDIYHFEGGIKEY 244

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           +    +   ++       + +  G     VE ++ +       + ++ N I T EGG HE
Sbjct: 245 VSFLNQKEQVLFEPPVYVEGDYDGI---NVEASLQYITGYKSTLLTFANNIHTYEGGMHE 301

Query: 332 SGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           SG + ALTR +  YA   +  +    ++  +D+      ++S+    P+F GQTKTKL +
Sbjct: 302 SGFKTALTRVVNDYARKAKILKDNDDNLSGEDIREGMTAVISIKHPNPQFEGQTKTKLGN 361

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLR 448
            DA+  V+ A  D F  +L++NP    K++E   +        +R +    +K+ +    
Sbjct: 362 SDARAAVDKAFSDTFSKFLLENPQVGRKIVEKGQLAARARIAAKRAREVTRKKSGLEIAN 421

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLAD + N    +ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I 
Sbjct: 422 LPGKLADNTSNDPKISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRIL 481

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            NQ+I  +  ALG    + +     RY K+IIMTDADVDGAHI +LLLT FY+ M  +I+
Sbjct: 482 ANQEIRTIFTALGTGFGADFDINKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMKPMIK 541

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             ++++  PPL+++ QG    Y   +E     L   +     K  + R+KGLGEM   QL
Sbjct: 542 AGYVYIARPPLYQVRQGKVIKYLDTDEELHDYLGTLQPS--PKPIVQRYKGLGEMDPEQL 599

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
            ET M+   R L RV    D    +D +++   LMG +   R +FI++ A +++++  
Sbjct: 600 WETTMNPENRRLDRV----DPEDAEDAEEAFEMLMGNEVGPRREFIEQNAKYVENLDA 653


>gi|71903356|ref|YP_280159.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS6180]
 gi|71802451|gb|AAX71804.1| topoisomerase IV subunit B [Streptococcus pyogenes MGAS6180]
          Length = 650

 Score =  589 bits (1518), Expect = e-166,   Method: Composition-based stats.
 Identities = 241/653 (36%), Positives = 372/653 (56%), Gaps = 34/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V +
Sbjct: 10  NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G ++V D+GRG+P   H       T+++I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 70  NKDGSVSVADSGRGMPTGQH--AMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 127

Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R  +++ Q+F  G  P++ L+K     ++K GT +TF PD KIF   
Sbjct: 128 VNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTI 187

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   VK   +  +        P  EEF++  G++ +++   E+
Sbjct: 188 -DFKFNTISERLKESAFLLKNVKMSLTDLRGDD-----PIIEEFHYENGVQDFVEYLNED 241

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++  I+    ++       VE A+ + +   +   S+ N + T +GG+HE+GL+ A+
Sbjct: 242 KETLTPVIYMEGQDQD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ + E   +F GQTK KL S  A+ 
Sbjct: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 357

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451
            VE+ + +    +L++N   A+ L+   I+  + R   RK R+ +R     K       G
Sbjct: 358 IVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 417

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL       A   EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N+
Sbjct: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  +V  +G    + +  ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 478 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 537

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     K  YA  +   + + +EF K       + R+KGLGEM A+Q
Sbjct: 538 VYIALPPLYKMSKGKGKTEKVSYAWTDGELEDLRKEFGKGAI----LQRYKGLGEMNANQ 593

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET MD   RTL+RV I+     L   +  ++ LMG KA  R ++I++   F
Sbjct: 594 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 642


>gi|293380895|ref|ZP_06626931.1| DNA gyrase, B subunit [Lactobacillus crispatus 214-1]
 gi|290922568|gb|EFD99534.1| DNA gyrase, B subunit [Lactobacillus crispatus 214-1]
          Length = 654

 Score =  589 bits (1518), Expect = e-166,   Method: Composition-based stats.
 Identities = 247/668 (36%), Positives = 366/668 (54%), Gaps = 20/668 (2%)

Query: 24  KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVID 83
             + +         +  +D Y+AS I++L GLE VR RPGMYIG T  + LHHL  E+ID
Sbjct: 2   ADNSKENLEKVKKYEKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEIID 61

Query: 84  NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143
           N++DE +AG+A  IEV+++ +G +TV D+GRGIPV+   K   +  LE + T LHAGGKF
Sbjct: 62  NSIDERLAGFATKIEVTINEDGSVTVQDDGRGIPVDIQEK-TGRPALETVFTVLHAGGKF 120

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NK 202
               Y++SGGLHGVG SVVNALS +L VTV R    +   F  G     +++   V  ++
Sbjct: 121 GGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDGKKYFIDFDHGRVKDEMKQIGTVPLDE 180

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT + F PDP IF +   FD   L    +  A+L+  +   ++  ++        E + 
Sbjct: 181 HGTIVHFYPDPDIFTETIVFDDKILKNRIRELAFLNKGLTLTFTDKRK-----DTAETDV 235

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           + F GG+K Y+    + + ++  +    ++   G     VE A+ +       + ++ N 
Sbjct: 236 YKFEGGIKEYVAFLNKGQEVLFDDPIYVESTYNGI---DVEVALQYTNGYKTTLMTFANN 292

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I T EGG HE+G + ALTR +  YA  ++    +  ++  +D+      I+SV    P+F
Sbjct: 293 IHTYEGGMHEAGFKTALTRVVNDYAHKSKILKDKDDNLSGEDIREGMTAIVSVKHPSPQF 352

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREV 438
            GQTKTKL + DA+  V+ A  + F  +L++NP    K++E   +        +R +   
Sbjct: 353 EGQTKTKLGNSDARTAVDKAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVT 412

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            +K+ +    LPGKLAD + N    +ELFIVEG+SAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 413 RKKSGLEIANLPGKLADNASNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILN 472

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  NQ+I  L  ALG    + +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 473 VEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIRTLLLTL 532

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY  M  +I++ ++++  PPL+++ QG    Y   +E     L   +     K  + R+K
Sbjct: 533 FYNYMRPMIDKGYVYIAKPPLYQVRQGKVVRYLDTDEELHDYLGSLQPS--PKPTVQRYK 590

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           GLGEM   QL ET M+   R L RV         KD       LMG +   R  FIQ+ A
Sbjct: 591 GLGEMDPEQLWETTMNPENRRLDRVSPEY----AKDADAVFELLMGNEVSPRRDFIQKNA 646

Query: 679 SFIDDVGT 686
            +++++  
Sbjct: 647 KYVENLDA 654


>gi|184153407|ref|YP_001841748.1| DNA topoisomerase IV subunit B [Lactobacillus reuteri JCM 1112]
 gi|183224751|dbj|BAG25268.1| topoisomerase IV B subunit [Lactobacillus reuteri JCM 1112]
          Length = 669

 Score =  589 bits (1517), Expect = e-166,   Method: Composition-based stats.
 Identities = 243/651 (37%), Positives = 364/651 (55%), Gaps = 34/651 (5%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YDASSI++L+GLE VR RPGMYIG TD + LHHL  E++DNA+DE ++GY + I + ++ 
Sbjct: 8   YDASSIQVLKGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGDEINIIIEA 67

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGVGISVV 162
           +  +TV D+GRG+PV  H     K T E+I+T LHAGGKF  +  Y+ SGGLHGVG SVV
Sbjct: 68  DNAITVQDHGRGMPVGMH--ASGKPTPEVIMTVLHAGGKFGQSDGYKTSGGLHGVGASVV 125

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS  L +T+ R +  + + F  G  P+  L+K  K + + GT ++F+PDPKIF     
Sbjct: 126 NALSSHLTLTIVRDHVRYQEIFKDGGQPVGTLKKLGKTKAENGTTVSFKPDPKIFSTTV- 184

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +D   L    +  A+L   +K   +  +   EK     ++ F F  G++ ++    E + 
Sbjct: 185 YDYNTLANRLRESAFLLKGIKITLTDKRAGQEK-----QDVFQFADGIQEFVSYLNEGKD 239

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340
           ++         ++ G     VE A  + +   E   S+ N + T +GGTHE+G R A T+
Sbjct: 240 VLGK-TLYFDGKQDGV---EVEVAAQYNDGYSESLLSFVNNVRTPDGGTHEAGFRSAWTK 295

Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA+     +    ++   D+      ++SV I E   +F GQTK KL +L+A++ V
Sbjct: 296 TFNEYAKKVGLLKANDKNLEGSDVREGLTAVISVRIPERLLQFEGQTKDKLGTLEARKIV 355

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL---RLPGKL 453
           +  + +  ++ L++N   A  L+   ++  E R   RK R   R    +      L GKL
Sbjct: 356 DAIVSEQLNYALMENGDFAQMLIRKALKAREAREAARKARNQARGGKRKGKKERNLSGKL 415

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                  A   ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + +  N+++
Sbjct: 416 TPAQSKNAKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVLKNEEL 475

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++  +G    S++  ED  Y+K+IIMTDAD DGAHI  LLLTFFY+ M  +IE   ++
Sbjct: 476 NTIIYTVGAGAGSEFNVEDSNYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKIY 535

Query: 574 LISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+R+ +G        YA   E   K+ ++  K      ++ RFKGLGEM A QL 
Sbjct: 536 IALPPLYRLQRGRGAKTNITYAWTNEELTKLTKKMGKGA----QLQRFKGLGEMNADQLW 591

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+ + RTL++V I       +  +  +  LMG K + R ++I+E   F
Sbjct: 592 ETTMNPDTRTLIQVRIED----AELAERRVTTLMGNKVEPRREWIEENVQF 638


>gi|259503381|ref|ZP_05746283.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus antri DSM
           16041]
 gi|259168677|gb|EEW53172.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus antri DSM
           16041]
          Length = 663

 Score =  589 bits (1517), Expect = e-166,   Method: Composition-based stats.
 Identities = 245/651 (37%), Positives = 358/651 (54%), Gaps = 34/651 (5%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YD SSI++L+GLE VR RPGMYIG TD + LHHL  E++DNA+DE ++GY + I V+++ 
Sbjct: 13  YDESSIQVLKGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALSGYGDEINVTIEA 72

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN-STYEISGGLHGVGISVV 162
           +  +TV D+GRG+PV  H     K T E+I+T LHAGGKF     Y+ SGGLHGVG SVV
Sbjct: 73  DNSITVQDHGRGMPVGMH--ASGKPTPEVIMTVLHAGGKFGQADGYKTSGGLHGVGASVV 130

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS  L +T+ R +  + +KF  G  P+  L+K  K R   GT +TF+PDP IF     
Sbjct: 131 NALSTNLTLTIVRDHVRYQEKFKNGGQPVGTLKKLGKTRVDSGTTVTFKPDPAIFTTTT- 189

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +D   L    +  A+L   +K   +  +   E+  +     F F  G++ ++    E + 
Sbjct: 190 YDYNTLANRLRESAFLLKGIKIVLADKRPGQEQENV-----FQFDDGIQEFVSYLNEGKD 244

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340
            +         + +G     VE A  + +   E   S+ N + T +GGTHE+G R A T+
Sbjct: 245 TLGK-TLYFDGKDQGV---EVEVAAQYNDGYSETLLSFVNNVRTPDGGTHEAGFRSAWTK 300

Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA+     +    ++   D+      ++SV I E   +F GQTK KL + +A++ V
Sbjct: 301 TFNEYAKRVGLLKANDKNLEGSDVREGLTAVVSVRIPERLLQFEGQTKDKLGTPEARKIV 360

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL---RLPGKL 453
           +  + +  ++ L++N   A  L+   ++  E R   RK R   R    +      L GKL
Sbjct: 361 DTVVSEQLNYALMENGDFAQMLIRKALKAREAREAARKARNQARGGKRKSRKERNLSGKL 420

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                  A   ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + +  N+++
Sbjct: 421 TPAQSKNAQKNELFLVEGDSAGGSAKQGRDRKYQAILPLRGKVLNTEKAKLDDVLKNEEL 480

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++  +G    S++  +D  Y+K+IIMTDAD DGAHI  LLLTFFY+ M  +IE   ++
Sbjct: 481 NTIIYTVGAGAGSEFDVDDSNYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKVY 540

Query: 574 LISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+R+ QG     K  YA   E   K+ +   K      ++ RFKGLGEM A QL 
Sbjct: 541 IALPPLYRLQQGKGAKTKITYAWTNEELTKLTKRMGKTA----QLQRFKGLGEMNADQLW 596

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV I       +  +  +  LMG K + R ++I+E   F
Sbjct: 597 ETTMNPETRTLIRVRIED----AELAERRVTTLMGNKVEPRREWIEENVQF 643


>gi|193216997|ref|YP_002000239.1| DNA gyrase subunit B [Mycoplasma arthritidis 158L3-1]
 gi|193002320|gb|ACF07535.1| DNA gyrase subunit B [Mycoplasma arthritidis 158L3-1]
          Length = 647

 Score =  589 bits (1517), Expect = e-166,   Method: Composition-based stats.
 Identities = 261/661 (39%), Positives = 367/661 (55%), Gaps = 25/661 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + Q     Y A +I++LEGLE VR RPGMYIG    + LHHL  E++DN++DE +AG+A
Sbjct: 1   MSKQEEISKYGAKNIQVLEGLEAVRKRPGMYIGSIGFRGLHHLIWEIVDNSVDEAMAGFA 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             IEV L  N  + V+DNGRG+PV+ HP    KS +E ILT LHAGGKFD++ Y++SGGL
Sbjct: 61  TNIEVKLHPNNEIEVIDNGRGMPVDIHP-TTKKSAVETILTVLHAGGKFDSTNYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKV-RNKRGTRITFRPD 212
           HGVG SVVNALSD   V V R   ++ QK+ + G P+ PLE   +V +++ GTRI F PD
Sbjct: 120 HGVGASVVNALSDSFEVWVKRGGKLYYQKYINGGHPVKPLEVIGEVNKDETGTRIKFHPD 179

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            +I      FD   ++   +  AYL+  +           E         F F GG+  Y
Sbjct: 180 YQIMDKV-AFDFGTIIDHAKQIAYLNKGLSIS-------CEDITKNTIRNFCFEGGIIDY 231

Query: 273 LQTKLENRSLISSEIFTGKT----EKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           +      + +I  +I   +     +        V  AI + E     I SY N I T EG
Sbjct: 232 VSELNRGKKVIIPDIIYAEGTFRDKTPNAQDVIVNVAIQYNETYTSNIVSYANNIQTGEG 291

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKT 385
           GTHE G   ALTR   KYAE  +  +  +     +D     V I+S+   +P F GQTK 
Sbjct: 292 GTHEQGFYDALTRIYNKYAEDNKLFKNNNEKISREDTKDGLVAIISIKHTDPIFEGQTKG 351

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT-AI 444
           KL + DA+      + +  + Y+ +NP  A  ++E  +     RL     RE +RK    
Sbjct: 352 KLENKDARIATNKIISEQLERYMAENPSHAKAIIEKCLLTQRSRLAANAAREASRKKEGS 411

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADCS   A   ELFIVEG+SAGGSAK  R+R+ QA+LPLRGKI+N      
Sbjct: 412 EFGNLPGKLADCSSKNAEVRELFIVEGNSAGGSAKMGRDRATQAILPLRGKIINAEKQDF 471

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
             + +N+++  ++ ALG     ++    L+Y K++IMTDADVDGAHIA+LLLTFFY+ M 
Sbjct: 472 TSVMSNKEVSSMIHALGTGITDEFNINKLKYHKIVIMTDADVDGAHIATLLLTFFYRYMR 531

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
            LIE   +++  PPL++I+    + YA+++  K++IL +        I I R+KGLGEM 
Sbjct: 532 PLIEYGFVYIAQPPLYKISTAKVTEYAYNDAQKEEILSKL--EDSKNISIQRYKGLGEMD 589

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
             QL ET M+   R +L+V+I+     +       + LMG + + R  FIQE A +  ++
Sbjct: 590 PEQLWETTMNPATRKMLQVQIDD----IASCDTIFSTLMGEEIEPRHDFIQENAKYATNI 645

Query: 685 G 685
            
Sbjct: 646 D 646


>gi|148544013|ref|YP_001271383.1| DNA topoisomerase IV subunit B [Lactobacillus reuteri DSM 20016]
 gi|227364928|ref|ZP_03848972.1| DNA topoisomerase IV subunit B [Lactobacillus reuteri MM2-3]
 gi|325682449|ref|ZP_08161966.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus reuteri
           MM4-1A]
 gi|148531047|gb|ABQ83046.1| DNA topoisomerase IV subunit B [Lactobacillus reuteri DSM 20016]
 gi|227070032|gb|EEI08411.1| DNA topoisomerase IV subunit B [Lactobacillus reuteri MM2-3]
 gi|324978288|gb|EGC15238.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus reuteri
           MM4-1A]
          Length = 674

 Score =  589 bits (1517), Expect = e-166,   Method: Composition-based stats.
 Identities = 243/651 (37%), Positives = 364/651 (55%), Gaps = 34/651 (5%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YDASSI++L+GLE VR RPGMYIG TD + LHHL  E++DNA+DE ++GY + I + ++ 
Sbjct: 13  YDASSIQVLKGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGDEINIIIEA 72

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGVGISVV 162
           +  +TV D+GRG+PV  H     K T E+I+T LHAGGKF  +  Y+ SGGLHGVG SVV
Sbjct: 73  DNAITVQDHGRGMPVGMH--ASGKPTPEVIMTVLHAGGKFGQSDGYKTSGGLHGVGASVV 130

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS  L +T+ R +  + + F  G  P+  L+K  K + + GT ++F+PDPKIF     
Sbjct: 131 NALSSHLTLTIVRDHVRYQEIFKDGGQPVGTLKKLGKTKAENGTTVSFKPDPKIFSTTV- 189

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +D   L    +  A+L   +K   +  +   EK     ++ F F  G++ ++    E + 
Sbjct: 190 YDYNTLANRLRESAFLLKGIKITLTDKRAGQEK-----QDVFQFADGIQEFVSYLNEGKD 244

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340
           ++         ++ G     VE A  + +   E   S+ N + T +GGTHE+G R A T+
Sbjct: 245 VLGK-TLYFDGKQDGV---EVEVAAQYNDGYSESLLSFVNNVRTPDGGTHEAGFRSAWTK 300

Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA+     +    ++   D+      ++SV I E   +F GQTK KL +L+A++ V
Sbjct: 301 TFNEYAKKVGLLKANDKNLEGSDVREGLTAVISVRIPERLLQFEGQTKDKLGTLEARKIV 360

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL---RLPGKL 453
           +  + +  ++ L++N   A  L+   ++  E R   RK R   R    +      L GKL
Sbjct: 361 DAIVSEQLNYALMENGDFAQMLIRKALKAREAREAARKARNQARGGKRKGKKERNLSGKL 420

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                  A   ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + +  N+++
Sbjct: 421 TPAQSKNAKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVLKNEEL 480

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++  +G    S++  ED  Y+K+IIMTDAD DGAHI  LLLTFFY+ M  +IE   ++
Sbjct: 481 NTIIYTVGAGAGSEFNVEDSNYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKIY 540

Query: 574 LISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+R+ +G        YA   E   K+ ++  K      ++ RFKGLGEM A QL 
Sbjct: 541 IALPPLYRLQRGRGAKTNITYAWTNEELTKLTKKMGKGA----QLQRFKGLGEMNADQLW 596

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+ + RTL++V I       +  +  +  LMG K + R ++I+E   F
Sbjct: 597 ETTMNPDTRTLIQVRIED----AELAERRVTTLMGNKVEPRREWIEENVQF 643


>gi|312872743|ref|ZP_07732808.1| DNA gyrase, B subunit [Lactobacillus iners LEAF 2062A-h1]
 gi|311091785|gb|EFQ50164.1| DNA gyrase, B subunit [Lactobacillus iners LEAF 2062A-h1]
          Length = 653

 Score =  589 bits (1517), Expect = e-166,   Method: Composition-based stats.
 Identities = 246/658 (37%), Positives = 371/658 (56%), Gaps = 20/658 (3%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A   +  ++ Y+AS I++L GLE VR RPGMYIG T  + LHHL  E+IDN++DE +AG+
Sbjct: 11  ALNFEKRAEKYNASQIQVLGGLEAVRKRPGMYIGNTSIQGLHHLVWEIIDNSIDEKLAGF 70

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A  IE++++ +G +TV D+GRGIPV+   K   +S LE + T LHAGGKF    Y++SGG
Sbjct: 71  ATKIEITVNEDGSVTVEDDGRGIPVDIQKK-TGRSALETVFTVLHAGGKFGGGGYKVSGG 129

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPD 212
           LHGVG SVVNALS +L+V V R    +   F+ G     + +  +V   + GT + F PD
Sbjct: 130 LHGVGASVVNALSTKLNVIVMRDGKKYCIDFNHGRVEQEVHEVGEVPLTQHGTIVRFYPD 189

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P IF +   FD   L    +  A+L+  +K  ++  ++        EK+ ++F GG+K Y
Sbjct: 190 PDIFTETTVFDDRILKNRIRELAFLNKGLKLTFTDKRKN-----TAEKDIYHFEGGIKEY 244

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           +    +   ++       + +  G     VE ++ +       + ++ N I T EGG HE
Sbjct: 245 VSFLNQKEQVLFEPPVYVEGDYDGI---NVEASLQYITGYKSTLLTFANNIHTYEGGMHE 301

Query: 332 SGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           SG + ALTR +  YA   +  +    ++  +D+      ++S+    P+F GQTKTKL +
Sbjct: 302 SGFKAALTRVVNDYARKAKILKDNDDNLSGEDIREGMTAVISIKHPNPQFEGQTKTKLGN 361

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLR 448
            DA+  V+ A  D F  +L++NP    K++E   +        +R +    +K+ +    
Sbjct: 362 SDARAAVDKAFSDTFSKFLLENPQVGRKIVEKGQLAARARIAAKRAREVTRKKSGLEIAN 421

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLAD + N    +ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I 
Sbjct: 422 LPGKLADNTSNDPKISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRIL 481

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            NQ+I  +  ALG    + +     RY K+IIMTDADVDGAHI +LLLT FY+ M  +I+
Sbjct: 482 ANQEIRTIFTALGTGFGADFDINKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMKPMIK 541

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             ++++  PPL+++ QG    Y   +E     L   +     K  + R+KGLGEM   QL
Sbjct: 542 AGYVYIARPPLYQVRQGKIIKYLDTDEELHDYLGTLQPS--PKPIVQRYKGLGEMDPEQL 599

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
            ET M+   R L RV    D    +D +++   LMG +   R +FI++ A +++++  
Sbjct: 600 WETTMNPENRRLDRV----DPEDAEDAEEAFEMLMGNEVGPRREFIEQNAKYVENLDA 653


>gi|219668703|ref|YP_002459138.1| DNA topoisomerase (ATP-hydrolyzing) [Desulfitobacterium hafniense
           DCB-2]
 gi|219538963|gb|ACL20702.1| DNA topoisomerase (ATP-hydrolyzing) [Desulfitobacterium hafniense
           DCB-2]
          Length = 638

 Score =  589 bits (1517), Expect = e-166,   Method: Composition-based stats.
 Identities = 250/648 (38%), Positives = 358/648 (55%), Gaps = 26/648 (4%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y+A SI++LEGLE VR RPGMYIG T  K LHH   E+IDNA+DE  AG+   IEV+L+ 
Sbjct: 7   YNAESIQVLEGLEAVRKRPGMYIGSTGSKGLHHCAWEIIDNAIDEAGAGFCTRIEVTLNP 66

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G LTV+DNGRG+P++ HP       + +    LHAGGKFD  +Y+ SGGLHGVG SVVN
Sbjct: 67  DGSLTVLDNGRGVPIDIHP-VKQIPAVRLAFEQLHAGGKFDGQSYKTSGGLHGVGASVVN 125

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIP-LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           ALS  L V V+R+  IF  ++  G    S L+  +K     GT++TF+PDP IF +   F
Sbjct: 126 ALSTFLVVEVSREGKIFRLEYEDGGKLKSDLKVIKKGIKGSGTKVTFKPDPLIFKETTSF 185

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L       A+L+  +    +  ++          E F    G+  +++   +    
Sbjct: 186 KFDTLRSRLMELAFLNPGLTIVLTDQRK------ETRSETFQSKNGVIGFVEHLNKESDY 239

Query: 283 I--SSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALT 339
                +    K EK       VE AI + + E+  + SY N I TDEGGTHESG R ALT
Sbjct: 240 NPVHKKPIFFKGEKDEVI---VECAIQYTDGEDEHLRSYVNNIPTDEGGTHESGFRTALT 296

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
           +    Y +     K+  S+I DDL      +LSV +REP+F GQTKTKL + + +  V++
Sbjct: 297 KVFNAYGKKNNIFKKEESLIGDDLKDGLTCVLSVKVREPQFEGQTKTKLSNTEVEGVVQS 356

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
              +    +  QNP  A   +   +    ERL  ++ +E   +        L GKLA CS
Sbjct: 357 LTNEGISTFFEQNPAVAKDAISRALTTCLERLAAKRAKELKKKARDAEVKALSGKLAACS 416

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           +   +  ELF+VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  +K+  N++I  ++
Sbjct: 417 EKDRNRNELFLVEGDSAGGSAKSGRDRRFQAILPLRGKVINTYRAKMDKVLENEEIRSMI 476

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G     ++  +   Y +V IMTDAD+DGAHI  LLLTFFY+ M  LI    +++   
Sbjct: 477 TAIGAGIGKEFEVDKSNYARVCIMTDADIDGAHIRCLLLTFFYRYMKPLILGGKVYIAQA 536

Query: 578 PLFRI--TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
           PL+++   +G    YA+DE   +  L+E  K  K    + R+KGLGEM   QL ET ++ 
Sbjct: 537 PLYKVEKEKGKVVRYAYDEGELKDALKELGKSAK----LQRYKGLGEMNPEQLWETTLNP 592

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
             R +++V I+  L    + +  +  LMG + D R +F+ E   F +D
Sbjct: 593 VNRRMIQVTIDDAL----EAERKLKILMGEQVDPRREFLMENIVFTED 636


>gi|157692485|ref|YP_001486947.1| DNA topoisomerase IV subunit B [Bacillus pumilus SAFR-032]
 gi|157681243|gb|ABV62387.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Bacillus pumilus
           SAFR-032]
          Length = 655

 Score =  589 bits (1517), Expect = e-166,   Method: Composition-based stats.
 Identities = 250/651 (38%), Positives = 366/651 (56%), Gaps = 36/651 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y+  SI++LEGLE VR RPGMYIG TD + LHHL  E++DN++DEV+AG+ + I V + 
Sbjct: 8   DYNDDSIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEVLAGHGDHIVVKIH 67

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V D GRG+P   H     K T EIILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 68  KDNSISVQDKGRGMPTGMHK--LGKPTPEIILTVLHAGGKFGQGGYKTSGGLHGVGASVV 125

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L VT+ R   I+ Q+F  G  P++ LEK  K +   GT I F+PD  +F     
Sbjct: 126 NALSEWLTVTIERDGYIYHQRFENGGKPVTSLEKVGKTKK-TGTLIHFKPDRSMFSVTT- 183

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L +  +  A+L   +K     ++          +E FY+  G++ ++    E + 
Sbjct: 184 YNFDTLSERLRESAFLLKGLKIELIDERHDV-------QETFYYETGIEAFVAYLNEEKD 236

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
           ++ SE+ + + E        V++A  + +     I S+ N + T +GGTHESG + A+TR
Sbjct: 237 VL-SEVVSFEGE---HQSIEVDFAFQFNDGYSENILSFVNNVRTKDGGTHESGAKTAMTR 292

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA       ++  ++   D+      I+SV I E   +F GQTK KL + +A+  V
Sbjct: 293 AFNEYARKVALLKEKDKNLEGTDIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAV 352

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKL 453
           +  + +   ++L +N   AT L+   I+  + R   R+ RE  R    RK     L GKL
Sbjct: 353 DAVISEKLAYFLEENRETATLLVRKAIKAQQAREAARRAREEARSGKKRKKSEATLSGKL 412

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I
Sbjct: 413 TPAQSRNPARNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIFKNEEI 472

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A+G      +  ED+ Y+K++IMTDAD DGAHI  LLLTFFY+ M  LIE   +F
Sbjct: 473 NTIIHAIGGGVGVDFNVEDINYDKIVIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVF 532

Query: 574 LISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++++G   K V  YA  +E    +L++  K       I R+KGLGEM A QL 
Sbjct: 533 IALPPLYKVSKGSGKKEVIEYAWSDEEMDDVLKKVGK----GYTIQRYKGLGEMNADQLW 588

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV+I+         +  +  LMG K + R K+I++  +F
Sbjct: 589 ETTMNPESRTLVRVKIDD----AARVERRVTTLMGDKVEPRRKWIEKNVAF 635


>gi|308173787|ref|YP_003920492.1| subunit B of DNA topoisomerase IV [Bacillus amyloliquefaciens DSM
           7]
 gi|307606651|emb|CBI43022.1| subunit B of DNA topoisomerase IV [Bacillus amyloliquefaciens DSM
           7]
 gi|328553288|gb|AEB23780.1| DNA topoisomerase IV subunit B [Bacillus amyloliquefaciens TA208]
 gi|328911925|gb|AEB63521.1| subunit B of DNA topoisomerase IV [Bacillus amyloliquefaciens LL3]
          Length = 655

 Score =  589 bits (1517), Expect = e-166,   Method: Composition-based stats.
 Identities = 245/650 (37%), Positives = 363/650 (55%), Gaps = 34/650 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DEV+AGY + I V++ 
Sbjct: 8   DYNEDAIQVLEGLEAVRKRPGMYIGSTDARGLHHLVYEIVDNSVDEVLAGYGDHIIVTIH 67

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V D GRG+P   H     K T E+I T LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 68  KDNSISVQDRGRGMPTGMHK--LGKPTPEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVV 125

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+ L VT+ R   ++ Q+F  G       +K     K GT   F+PDP +F     +
Sbjct: 126 NALSEWLTVTIERDGHVYKQRFENGGKPVTSLEKIGTTKKTGTLTHFKPDPSMFSATV-Y 184

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L +  +  A+L   +K     ++   +       E FY+  G++ ++    E +  
Sbjct: 185 NFDTLSERLRESAFLLKGLKIELIDERNDVK-------EVFYYENGIEAFVAYLNEEKDA 237

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +  E+ + + E    H   V++A  + +     + S+ N + T +GGTHESG + A+TR 
Sbjct: 238 LC-EVVSFEGE---HHDIEVDFAFQFNDGYSENMLSFVNNVRTKDGGTHESGAKTAMTRA 293

Query: 342 IKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397
             +YA       ++  ++   D+      I+SV I E   +F GQTK KL + +A+   +
Sbjct: 294 FNEYARKVALLKEKDKNLEGADIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAAD 353

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLA 454
             + +   ++L +N   AT L++  I+ S+ R   RK RE  R    RK     L GKL 
Sbjct: 354 AVISENLAYFLEENRDTATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLT 413

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
                     EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I 
Sbjct: 414 PAGSRNPAKNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIFKNEEIN 473

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++ A+G    + +  ED+ Y+K+IIMTDAD DGAHI  LLLTFFY+ M  LIEQ  +F+
Sbjct: 474 TIIHAIGGGVGADFEIEDINYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEQGKVFI 533

Query: 575 ISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
             PPL+++++G   K +  YA  +E    +L++  K       I R+KGLGEM A QL E
Sbjct: 534 ALPPLYKVSKGSGKKEIIEYAWSDEEMDGVLKKVGK----GYTIQRYKGLGEMNADQLWE 589

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           T M+   RTL+RV+I+         +  +  LMG K + R K+I++  +F
Sbjct: 590 TTMNPESRTLVRVKIDD----AARVERRVTTLMGDKVEPRRKWIEKNVAF 635


>gi|291438512|ref|ZP_06577902.1| DNA topoisomerase chain B [Streptomyces ghanaensis ATCC 14672]
 gi|291341407|gb|EFE68363.1| DNA topoisomerase chain B [Streptomyces ghanaensis ATCC 14672]
          Length = 679

 Score =  589 bits (1517), Expect = e-166,   Method: Composition-based stats.
 Identities = 253/684 (36%), Positives = 376/684 (54%), Gaps = 25/684 (3%)

Query: 20  SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79
           ++    +  IP +    +  A+ +Y+AS+I +LEGL+ VR RPGMYIG T E+ LHHL  
Sbjct: 2   ADSGNPNENIPSTDTGVDSEATASYNASAITVLEGLDAVRKRPGMYIGSTGERGLHHLVQ 61

Query: 80  EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139
           EV+DN++DE +AGYA+ I+V++  +G + VVDNGRGIPV   P    K  +E++LT LHA
Sbjct: 62  EVVDNSVDEALAGYADTIDVTILDDGGIRVVDNGRGIPVGIVP-SEGKPAVEVVLTVLHA 120

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKF    Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL K E  
Sbjct: 121 GGKFGGGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGYRWTQDYKLGVPTAPLAKHEAT 180

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI-------- 251
               GT +TF  DP IF     +    L +  Q  A+L+  ++   + ++E         
Sbjct: 181 EE-TGTSVTFWADPDIFET-TDYSFETLSRRFQEMAFLNKGLRINLTDERESAKATAGAD 238

Query: 252 ---AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
               ++    +   +++ GG+  +++     +             +      ++E A+ W
Sbjct: 239 EAGEDEKYEVKAVSYHYEGGIVDFVKYLNSRKGDPVHPTVIDLEAEDKDRHLSLEVAMQW 298

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMIS 365
                  + S+ N I T EGGTHE G R ALT  I KYA   +    +  ++  DD+   
Sbjct: 299 NGGYTEGVYSFANIIHTHEGGTHEEGFRAALTSLINKYARDKKLLRDKDDNLTGDDIREG 358

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              I+SV + EP+F GQTKTKL + + +  V+  + +  + +L +NP EA  ++   I  
Sbjct: 359 LTAIISVKLSEPQFEGQTKTKLGNTEVKTFVQKVVYEHLNDWLDRNPNEAADIVRKGIAA 418

Query: 426 SEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           +  R+  RK R++ R+   +    LPGKL+DC  N     E+FIVEGDSAGGSAK  RN 
Sbjct: 419 ATARVAARKARDLTRRKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNP 478

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA+LP+RGKILNV  A  ++I  NQ+I  ++ A G      +  E LRY K+I+M DA
Sbjct: 479 EYQAILPIRGKILNVEKARIDRILQNQEIQAMISAFGTGVHEDFDIERLRYHKIILMADA 538

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEE 603
           DVDG HI +LLLTF ++ M  L+E  H+FL  PPL++I  G     YA+ +  +  ++E 
Sbjct: 539 DVDGQHINTLLLTFLFRFMRPLVEAGHVFLSRPPLYKIKWGKDDFEYAYSDRERDALIEM 598

Query: 604 FKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
            ++ GK   +  + RFKGLGEM A +L+ T MD   R L +V ++          D  + 
Sbjct: 599 GRQAGKRIREDSVQRFKGLGEMNAEELRVTTMDQEHRVLGQVTLDD----AAQADDLFSV 654

Query: 662 LMGTKADERFKFIQERASFIDDVG 685
           LMG   + R +FIQ  A  +  + 
Sbjct: 655 LMGEDVEARRQFIQRNAKDVRFLD 678


>gi|240172095|ref|ZP_04750754.1| DNA gyrase subunit B [Mycobacterium kansasii ATCC 12478]
          Length = 675

 Score =  589 bits (1517), Expect = e-166,   Method: Composition-based stats.
 Identities = 254/686 (37%), Positives = 368/686 (53%), Gaps = 47/686 (6%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A   + A D Y A+SI ILEGLE VR RPGMYIG T E+ LHHL  EV+DNA+DE +AGY
Sbjct: 2   AAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGY 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A  + V L  +G + V D+GRGIPV  H       T+++++T LHAGGKFD+  Y ISGG
Sbjct: 62  AATVSVVLLEDGGVEVADDGRGIPVAMH--ASGIPTVDVVMTQLHAGGKFDSDAYAISGG 119

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS  L V + R    +SQ + +  P+    K+     K GT + F  DP
Sbjct: 120 LHGVGVSVVNALSTRLEVEIKRDGHEWSQVYEKSEPMGL--KQGAPTKKTGTTVRFWADP 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK------------------------ 249
            +F     +D   + +  Q  A+L+  +    +  +                        
Sbjct: 178 NVFET-TEYDFETVARRLQEMAFLNKGLTINLTDQRVTQDEVVDEVVSDVAEAPKSASEK 236

Query: 250 -EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
              +      +K  F++PGGL  +++     ++ I S I     +  G     VE A+ W
Sbjct: 237 AAESAAPHKVKKRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGPGH---EVEIAMQW 293

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
                  + ++ NTI T EGGTHE G R ALT  + KYA+  +   ++  ++  DD+   
Sbjct: 294 NAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKEKDPNLTGDDIREG 353

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  ++   +  
Sbjct: 354 LAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPADAKTVVNKAVSS 413

Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGGSAK  R+ 
Sbjct: 414 AQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDS 473

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY K+++M DA
Sbjct: 474 MFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIARLRYHKIVLMADA 533

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603
           DVDG HI++LLLT  ++ M  LIE  H+FL  PPL+++        +A+ +  +  +LE 
Sbjct: 534 DVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEA 593

Query: 604 FKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
             K GK KI     I R+KGLGEM A +L ET MD + R L +V ++          +  
Sbjct: 594 GLKAGK-KINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELF 648

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
           + LMG   D R  FI   A  +  + 
Sbjct: 649 SILMGEDVDARRSFITRNAKDVRFLD 674


>gi|170780469|ref|YP_001708801.1| DNA gyrase subunit B [Clavibacter michiganensis subsp. sepedonicus]
 gi|169155037|emb|CAQ00133.1| DNA gyrase subunit B [Clavibacter michiganensis subsp. sepedonicus]
          Length = 664

 Score =  589 bits (1517), Expect = e-166,   Method: Composition-based stats.
 Identities = 253/667 (37%), Positives = 376/667 (56%), Gaps = 18/667 (2%)

Query: 28  EIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMD 87
              DS     Q  S++Y A+ I++LEGLE VR RPGMYIG T  + LHHL SE++DN++D
Sbjct: 6   THNDSDHITRQQVSNDYGANEIQVLEGLEAVRKRPGMYIGSTGPRGLHHLVSEIVDNSVD 65

Query: 88  EVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST 147
           E +AG+A+ I++++  +G + VVD+GRGIPV+ HP     ST+E++LT LHAGGKF    
Sbjct: 66  EALAGFASDIQITMRKDGGIRVVDDGRGIPVDIHP-VEGISTVELVLTKLHAGGKFGGGG 124

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y +SGGLHGVG SVVNALS+ L V V RQ  ++ Q F+ G+P +PLEK E      GT I
Sbjct: 125 YAVSGGLHGVGSSVVNALSERLDVEVRRQGAVWRQSFTIGVPDAPLEKGEGSTE-TGTTI 183

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
           TF P  +IF     FD   L    Q  A+L+  +      ++E  E       E+F +  
Sbjct: 184 TFWPSREIFET-VEFDYDTLRARFQQMAFLNKGLALTLHDERE--EDGAEHRTEKFLYER 240

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GL  Y++  ++ +            E +    + ++E A+ W       + +Y NTI T 
Sbjct: 241 GLVDYVEHLVKAKKTEVVNADVIAFESEDTVKKISLEVAMQWTTSYTESVHTYANTINTH 300

Query: 326 EGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           EGGTHE G R ALT  + +YA   +   ++  ++  DD+      ++SV + EP+F GQT
Sbjct: 301 EGGTHEEGFRAALTTLVNRYARENKLLREKDENLTGDDVREGLTAVISVKLGEPQFEGQT 360

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443
           KTKL + +A+  V+  +      +L +NP +A  ++   ++ S+ RL  RK RE  R+  
Sbjct: 361 KTKLGNTEAKAYVQRIVGQQLGDWLEKNPSQAKDIIRKGMQASQARLAARKAREQTRRKG 420

Query: 444 -IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
            +    +PGKL DC       +E+F+VEGDSAGGSA Q RN + QA+LPLRGKILNV  A
Sbjct: 421 LLESGGMPGKLKDCQSKDPAFSEVFLVEGDSAGGSAVQGRNPTTQAILPLRGKILNVEKA 480

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
             ++   N ++  ++ A G      +  E +RY K+++M DADVDG HI +LLLT  ++ 
Sbjct: 481 RLDRALQNNEVQSMITAFGAGIGEDFNAEKVRYHKIVLMADADVDGQHITTLLLTLLFRY 540

Query: 563 MYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIE---ISRFK 618
           M  LIE  +++L  PPL+R+     +  Y + +  +  +L   +++GK   +   I R+K
Sbjct: 541 MRPLIELGYVYLAQPPLYRLKWSNAEDQYVYTDAERDALLIHGQQNGKKLPKDNGIQRYK 600

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           GLGEM   +L ET MD   RTL++V ++          +  + LMG   + R  FIQ  A
Sbjct: 601 GLGEMDYKELWETTMDPATRTLMQVTLDD----AAGADEVFSTLMGEDVESRRSFIQRNA 656

Query: 679 SFIDDVG 685
             +  + 
Sbjct: 657 KDVRFLD 663


>gi|218296312|ref|ZP_03497068.1| DNA gyrase, B subunit [Thermus aquaticus Y51MC23]
 gi|218243384|gb|EED09914.1| DNA gyrase, B subunit [Thermus aquaticus Y51MC23]
          Length = 641

 Score =  589 bits (1517), Expect = e-166,   Method: Composition-based stats.
 Identities = 259/649 (39%), Positives = 368/649 (56%), Gaps = 29/649 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +YDAS+I++L+GLE VR RP MYIGGT  +  HHLF E++DNA+DE +AGYA  I  +L+
Sbjct: 8   SYDASAIKVLKGLEGVRHRPAMYIGGTGVEGYHHLFKEILDNAVDEALAGYATEITTTLN 67

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G LTV DNGRGIPV+  P+   K  +E+I TTLH+GGKF++  Y++SGGLHGVG SVV
Sbjct: 68  PDGSLTVEDNGRGIPVDLMPE-EGKPAVEVIYTTLHSGGKFESGAYKVSGGLHGVGASVV 126

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221
           NALS+   V V R        FSRG    PL+      + K GTR+TF+PDP+IFG+   
Sbjct: 127 NALSEWTVVEVFRDGKHHRIAFSRGEVTEPLQVVGPTPKGKTGTRVTFKPDPQIFGN-LT 185

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD +++    +  ++L   ++  +       E       E F   GG+ ++ +   E   
Sbjct: 186 FDPSKIRARLKEVSFLVAGLRLVFKDLIHGRE-------EVFQDKGGVASFAKALAEGEE 238

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
           L+  + F  + ++       VE      +    EI +Y N I T +GGTH +  + A +R
Sbjct: 239 LLYEKPFLIRGQE---GEVEVEVGFIHTKGYTTEILTYANMIPTRDGGTHLTAFKAAYSR 295

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            + +YA+      ++      DDL+     ++SV + +P+F GQTK KL++ +A   V  
Sbjct: 296 ALNQYAKKAGLNKEKGPQPTGDDLLEGLYAVVSVKLPQPQFEGQTKGKLLNPEAGTAVGQ 355

Query: 399 ALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
            + +     L +NP  A  +  + +         R+ +  V R+  +    LPGKLADC 
Sbjct: 356 VVYEKLLEILEENPRIAKTVYEKALRAAQAREAARKARELVRRQNPLESDDLPGKLADCQ 415

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                  ELFIVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  AG  K   N ++  +V
Sbjct: 416 TENPEEAELFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKAGLSKALKNAEVRAMV 475

Query: 518 QALGCRT-----RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
            A+G         + +  E LRY K+IIMTDADVDG+HI +LLLTFFY+ M  LIE+ H+
Sbjct: 476 AAIGAGLSGTGEEAHFDLEGLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPLIERGHV 535

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL+R+  G K  Y + +E   + L+E +       E+ RFKGLGEM   QL ET 
Sbjct: 536 YIAQPPLYRLQVGKKVEYLYSDEELAQRLKELEG---KSYEVQRFKGLGEMNPEQLWETT 592

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           M+  KR L RVE+   L    +  +   KLMG +   R +FI+E A + 
Sbjct: 593 MNPEKRVLKRVELQDAL----EASELFEKLMGQEVAPRREFIEEHARYA 637


>gi|19745973|ref|NP_607109.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS8232]
 gi|19748134|gb|AAL97608.1| putative DNA topoisomerase IV (subunit B) [Streptococcus pyogenes
           MGAS8232]
          Length = 650

 Score =  588 bits (1516), Expect = e-166,   Method: Composition-based stats.
 Identities = 241/653 (36%), Positives = 370/653 (56%), Gaps = 34/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V +
Sbjct: 10  NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G ++V D+GRG+P   H       T+++I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 70  NKDGSVSVADSGRGMPTGQH--AMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 127

Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F  G  P++ L+K     ++K GT +TF PD KIF   
Sbjct: 128 VNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTI 187

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   VK   +  +        P  EEF++  G++ +++   E+
Sbjct: 188 -DFKFNTISERLKESAFLLKNVKMSLTDLRGDD-----PIIEEFHYENGVQDFVEYLNED 241

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++  I+    ++       VE A+ + +   +   S+ N + T +GG+HE+GL+ A+
Sbjct: 242 KETLTPVIYMEGQDQD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ + E   +F GQTK KL S  A+ 
Sbjct: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 357

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451
            VE+ + +    +L++N   A+ L+   I+  + R   RK R+ +R     K       G
Sbjct: 358 IVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 417

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL       A   EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N+
Sbjct: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  +V  +G    + +  ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 478 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 537

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     K  YA  +   + +  EF K       + R+KGLGEM A+Q
Sbjct: 538 VYIALPPLYKMSKGKGKTEKVSYAWTDGELEDLRREFGKGAI----LQRYKGLGEMNANQ 593

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET MD   RTL+RV I+     L   +  ++ LMG KA  R ++I++   F
Sbjct: 594 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 642


>gi|332188910|ref|ZP_08390613.1| DNA topoisomerase IV, B subunit [Sphingomonas sp. S17]
 gi|332011050|gb|EGI53152.1| DNA topoisomerase IV, B subunit [Sphingomonas sp. S17]
          Length = 659

 Score =  588 bits (1516), Expect = e-166,   Method: Composition-based stats.
 Identities = 350/648 (54%), Positives = 451/648 (69%), Gaps = 9/648 (1%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YDASSI +LEGLEPVR RPGMYIGGTDE+ALHHL +EV+DNAMDE +AG+AN IEV L+ 
Sbjct: 16  YDASSIEVLEGLEPVRRRPGMYIGGTDERALHHLAAEVLDNAMDEAVAGHANRIEVKLEP 75

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
              LT+VDNGRGIPV+ HPKFP+KS LE+IL+TLH+GGKF    Y  SGGLHGVGISVVN
Sbjct: 76  GNRLTIVDNGRGIPVDPHPKFPDKSALEVILSTLHSGGKFTGKAYATSGGLHGVGISVVN 135

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS +  V VAR+  ++ Q+F++G  L PLE      N+RGT + F PD +IFG +  F 
Sbjct: 136 ALSSDTVVEVARERVLYRQRFAKGATLGPLETVGAAPNRRGTSVAFTPDSEIFGPELHFK 195

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
            ARL K+ +SKAYL   V+  W C  E+      P    F FPGGL  +L+ ++  R   
Sbjct: 196 PARLHKLVRSKAYLFAGVEIRWHCAPELISDD-TPADAVFQFPGGLADHLKEQIGGRECA 254

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTRGI 342
           +++ F+G  +  G  +G VEWA+AW    +   + YCNTI T +GGTHE GLR AL RG+
Sbjct: 255 TADFFSGNQDFPGE-QGRVEWAVAWPLWSDGSYSWYCNTIPTPDGGTHEQGLRQALVRGL 313

Query: 343 KKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRD 402
           + + EL   K+A  I +DD+M+ +  +LSVFIREP+F  QTK +L S +A   VE A+RD
Sbjct: 314 RAFGELVNQKKAKDITADDVMVGSELMLSVFIREPQFQSQTKDRLTSPEAAGLVEKAVRD 373

Query: 403 PFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLPGKLADCSQNI 460
            FDH+L  N      LL +V++R +ERLRR+ +REV RKTA   RKLRLPGKL DCS + 
Sbjct: 374 HFDHFLSANMERGKALLGYVLDRMDERLRRKAEREVKRKTATSARKLRLPGKLTDCSADS 433

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
             GTELFIVEGDSAGGSAKQAR+R  QA+LP+RGKILNVASA S KI  NQ+I DL  A+
Sbjct: 434 PEGTELFIVEGDSAGGSAKQARDRKTQAILPIRGKILNVASATSAKILQNQEIADLTLAM 493

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           GC TR       LRYEK++IMTDADVDGAHIA+LL+TFF+QEM DL+ + HL+L  PPL+
Sbjct: 494 GCGTRKDCDPTQLRYEKIVIMTDADVDGAHIATLLMTFFFQEMPDLVRRGHLYLAQPPLY 553

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           R+T G KS+YA D+ H+ + LE     GK K++++RFKGLGEM   QL+ET MD   R+L
Sbjct: 554 RLTVGAKSLYARDDSHRAE-LERTAFKGK-KVDVARFKGLGEMNPGQLRETTMDPATRSL 611

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD--VGT 686
           +R+ + ++       +D +++LMG     RF FIQE A+ +D+  +  
Sbjct: 612 IRITLPQEYEERAGVKDLVDRLMGNNPAHRFAFIQENAARLDEEVIDA 659


>gi|270293047|ref|ZP_06199258.1| DNA gyrase subunit B [Streptococcus sp. M143]
 gi|270279026|gb|EFA24872.1| DNA gyrase subunit B [Streptococcus sp. M143]
          Length = 648

 Score =  588 bits (1516), Expect = e-166,   Method: Composition-based stats.
 Identities = 252/652 (38%), Positives = 374/652 (57%), Gaps = 22/652 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
               + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ 
Sbjct: 6   KNQQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASH 65

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+V ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHG
Sbjct: 66  IQVFIEPDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHG 124

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS +L V V +   I  Q++ RG  ++ LE      +K GT + F PDP+IF
Sbjct: 125 VGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DKTGTTVHFTPDPEIF 183

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   FD  +L K  Q  A+L+  ++   +  +E  E     + + +++ GG+ +Y++  
Sbjct: 184 TETTTFDFDKLNKRIQELAFLNRGLRISITDKREGLE-----QSKHYHYEGGIASYVEYI 238

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335
            EN+ +I         E       TVE A+ +     E   S+ N I T EGGTHE G R
Sbjct: 239 NENKDVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFR 295

Query: 336 VALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR I  YA   +  +    ++  +D+      ++SV    P+F GQTKTKL + +  
Sbjct: 296 TALTRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVV 355

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
           +       D F  +L++NP  A +++E  ++        +R +    +K+ +    LPGK
Sbjct: 356 KITNRLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGK 415

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++
Sbjct: 416 LADCSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEE 475

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  L  A+G    +++     RY+K+++MTDADVDGAHI +LLLT  Y+ M  ++E  ++
Sbjct: 476 IRSLFTAMGTGFGAEFDVTKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYV 535

Query: 573 FLISPPLFRITQGTKSV-YAHDEEHKQKILEEF---KKHGKGKIEISRFKGLGEMLASQL 628
           ++  PP++ +  G++   Y      ++  L+E       G+ K  I R+KGLGEM   QL
Sbjct: 536 YIAQPPIYGVKVGSEIKEYIQPGADQEIKLQEALARHSEGRSKPTIQRYKGLGEMDDHQL 595

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET MD   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 596 WETTMDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643


>gi|293365094|ref|ZP_06611811.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus oralis
           ATCC 35037]
 gi|307702197|ref|ZP_07639157.1| DNA gyrase, B subunit [Streptococcus oralis ATCC 35037]
 gi|322374607|ref|ZP_08049121.1| DNA gyrase, B subunit [Streptococcus sp. C300]
 gi|291316544|gb|EFE56980.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus oralis
           ATCC 35037]
 gi|307624210|gb|EFO03187.1| DNA gyrase, B subunit [Streptococcus oralis ATCC 35037]
 gi|321280107|gb|EFX57146.1| DNA gyrase, B subunit [Streptococcus sp. C300]
          Length = 648

 Score =  588 bits (1516), Expect = e-166,   Method: Composition-based stats.
 Identities = 252/652 (38%), Positives = 374/652 (57%), Gaps = 22/652 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
               + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ 
Sbjct: 6   KNQQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASH 65

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+V ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHG
Sbjct: 66  IQVFIEPDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHG 124

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS +L V V +   I  Q++ RG  ++ LE      +K GT + F PDP+IF
Sbjct: 125 VGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DKTGTTVHFTPDPEIF 183

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   FD  +L K  Q  A+L+  ++   +  +E  E     + + +++ GG+ +Y++  
Sbjct: 184 TETTTFDFEKLNKRIQELAFLNRGLRISITDKREGLE-----QTKHYHYEGGIASYVEYI 238

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335
            EN+ +I         E       TVE A+ +     E   S+ N I T EGGTHE G R
Sbjct: 239 NENKDVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFR 295

Query: 336 VALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR I  YA   +  +    ++  +D+      ++SV    P+F GQTKTKL + +  
Sbjct: 296 TALTRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVV 355

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
           +       D F  +L++NP  A +++E  ++        +R +    +K+ +    LPGK
Sbjct: 356 KITNRLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGK 415

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++
Sbjct: 416 LADCSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEE 475

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  L  A+G    +++     RY+K+++MTDADVDGAHI +LLLT  Y+ M  ++E  ++
Sbjct: 476 IRSLFTAMGTGFGAEFDVTKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYV 535

Query: 573 FLISPPLFRITQGTKSV-YAHDEEHKQKILEEF---KKHGKGKIEISRFKGLGEMLASQL 628
           ++  PP++ +  G++   Y      ++  L+E       G+ K  I R+KGLGEM   QL
Sbjct: 536 YIAQPPIYGVKVGSEIKEYIQPGADQEIKLQEALARHSEGRSKPTIQRYKGLGEMDDHQL 595

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET MD   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 596 WETTMDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643


>gi|41406103|ref|NP_958939.1| DNA gyrase subunit B [Mycobacterium avium subsp. paratuberculosis
           K-10]
 gi|118463778|ref|YP_879308.1| DNA gyrase subunit B [Mycobacterium avium 104]
 gi|254773058|ref|ZP_05214574.1| DNA gyrase subunit B [Mycobacterium avium subsp. avium ATCC 25291]
 gi|13431552|sp|Q9L7L3|GYRB_MYCPA RecName: Full=DNA gyrase subunit B
 gi|6969273|gb|AAF33694.1| putative gyrB [Mycobacterium avium subsp. paratuberculosis]
 gi|41394451|gb|AAS02322.1| GyrB [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118165065|gb|ABK65962.1| DNA gyrase, B subunit [Mycobacterium avium 104]
          Length = 677

 Score =  588 bits (1516), Expect = e-166,   Method: Composition-based stats.
 Identities = 252/688 (36%), Positives = 369/688 (53%), Gaps = 49/688 (7%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A   + A D Y AS+I +LEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +AGY
Sbjct: 2   AAQKKKAQDEYGASAITVLEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNSVDEAMAGY 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF--DNSTYEIS 151
           A+ ++V +  +G + V DNGRGIPV  H       T+++++T LHAGGKF  +NS Y +S
Sbjct: 62  ADRVDVRILDDGSVEVADNGRGIPVAMH--ATGAPTVDVVMTQLHAGGKFGGENSGYNVS 119

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS  L V +AR    +SQ +   +P +   K+ +   + GT I F  
Sbjct: 120 GGLHGVGVSVVNALSTRLEVNIARDGYEWSQYYDHAVPGTL--KQGEATKRTGTTIRFWA 177

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK----------------- 254
           DP IF     +D   + +  Q  A+L+  +    + ++   E+                 
Sbjct: 178 DPDIFET-TEYDFETVARRLQEMAFLNKGLTINLTDERVTNEEVVDEVVSDTADAPKSAQ 236

Query: 255 --------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
                       +   F++PGGL  +++     ++ I   I     +  G     VE A+
Sbjct: 237 EKAAESAAPHKVKHRTFHYPGGLVDFVKHINRTKNPIHQSIIDFGGKGPGH---EVEIAM 293

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLM 363
            W       + ++ NTI T EGGTHE G R ALT  + KY   +     +  ++  DD+ 
Sbjct: 294 QWNGGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLTGDDIR 353

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  ++   +
Sbjct: 354 EGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPADAKVIVNKAV 413

Query: 424 ERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
             ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGGSAK  R
Sbjct: 414 SSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGR 473

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           +   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY K+++M 
Sbjct: 474 DSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDITKLRYHKIVLMA 533

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKIL 601
           DADVDG HI++LLLT  ++ M  LIE  H+FL  PPL+++        +A+ +  +  +L
Sbjct: 534 DADVDGQHISTLLLTLLFRFMRPLIEHGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLL 593

Query: 602 EEFKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           E   K GK KI     I R+KGLGEM A +L ET MD   R L +V ++          +
Sbjct: 594 EAGLKAGK-KINKDDGIQRYKGLGEMDAKELWETTMDPTVRVLRQVTLDD----AAAADE 648

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
             + LMG   D R  FI   A  +  + 
Sbjct: 649 LFSILMGEDVDARRSFITRNAKDVRFLD 676


>gi|296535763|ref|ZP_06897924.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Roseomonas
           cervicalis ATCC 49957]
 gi|296263831|gb|EFH10295.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Roseomonas
           cervicalis ATCC 49957]
          Length = 691

 Score =  588 bits (1516), Expect = e-166,   Method: Composition-based stats.
 Identities = 358/681 (52%), Positives = 468/681 (68%), Gaps = 9/681 (1%)

Query: 9   FSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGG 68
               PP   G+    ++          A   A  +Y A  I +LEGLEPVR RPGMYIGG
Sbjct: 17  LPRPPPLRYGARRGCEQDMNDLFGGRGAKAQAGASYSAKDIEVLEGLEPVRRRPGMYIGG 76

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           TDE ALHHL +EVIDNAMDE +AG+A+ IEV+L+ + +LTV DNGRGIP + HPKFP  S
Sbjct: 77  TDENALHHLAAEVIDNAMDEAVAGHADRIEVTLEKDNWLTVRDNGRGIPTDPHPKFPKLS 136

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
            LE+ILTTLH+GGKF    Y+ SGGLHGVG SVVNALS+ L V VAR  T+F+Q +SRG 
Sbjct: 137 ALEVILTTLHSGGKFSGKAYDTSGGLHGVGSSVVNALSERLEVEVARDRTLFTQAYSRGK 196

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
           PLS L+    V N+RGT I F+PDP+IFG +  F AARL ++ +SKAYL   V+  WSCD
Sbjct: 197 PLSKLKNAGAVHNRRGTTIRFKPDPEIFGTQP-FLAARLFRLCRSKAYLFRGVEIRWSCD 255

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
             +  K   P +   +FPGGL  +L   +ENR+ +    + G++       G  EWA+ W
Sbjct: 256 PALV-KDDTPSQATLHFPGGLSDFLAAAVENRAPVIPAPWAGESTF-PQGAGRCEWAVTW 313

Query: 309 CEENPEITS-YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAV 367
            E+       Y NTI T +GGTHE+GLR AL +G++ Y EL + KRA +I ++D+     
Sbjct: 314 LEQGEGFLHTYANTIPTPQGGTHEAGLRAALVKGLRAYGELKKEKRAAAITAEDVFGGLA 373

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
           G+LSVFIREP+F GQTK KL S +A + VE  LRD FDH+L  +P  A  LL W IER+E
Sbjct: 374 GMLSVFIREPQFQGQTKDKLTSPEAAKLVEQGLRDHFDHWLAGDPAMAGNLLTWAIERAE 433

Query: 428 ERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
           ERLRRR+Q++  RK+A R+LRLPGKLADC++  A GTELF+VEGDSAGGSAKQAR+R  Q
Sbjct: 434 ERLRRREQKDTPRKSATRRLRLPGKLADCAREAADGTELFLVEGDSAGGSAKQARDRETQ 493

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVD 547
           AVLPLRGKILNVASA ++K+R NQ++ DL++ALGC    ++    LRY +V+IMTDADVD
Sbjct: 494 AVLPLRGKILNVASASADKLRQNQELKDLIEALGCGAGDKFDLARLRYGRVVIMTDADVD 553

Query: 548 GAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607
           GAHIA+LL+TFFY+E+ +L+ Q  ++L  PPL+R+    K++YA D+  ++K+L++  K 
Sbjct: 554 GAHIAALLMTFFYKELPELVRQGRVYLAQPPLYRLATPGKTLYAMDDAEREKLLKKAFKP 613

Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667
           G+ K+E+SRFKGLGEM  + LKET MD  KRTLLRV +  +  +   T + I  LMG K 
Sbjct: 614 GQ-KVEVSRFKGLGEMPPASLKETTMDPRKRTLLRVVLPPEERA--RTSELIEALMGRKP 670

Query: 668 DERFKFIQERA--SFIDDVGT 686
           + RFKFIQ+ A    +++V  
Sbjct: 671 ELRFKFIQDNAGKLDLEEVDA 691


>gi|169351628|ref|ZP_02868566.1| hypothetical protein CLOSPI_02409 [Clostridium spiroforme DSM 1552]
 gi|169291850|gb|EDS73983.1| hypothetical protein CLOSPI_02409 [Clostridium spiroforme DSM 1552]
          Length = 641

 Score =  588 bits (1516), Expect = e-166,   Method: Composition-based stats.
 Identities = 255/655 (38%), Positives = 371/655 (56%), Gaps = 19/655 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +    +YD S I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AGYA
Sbjct: 1   MSEEKVKHSYDESDIQVLEGLEAVRKRPGMYIGTTSIRGLHHLVWEIVDNSIDEALAGYA 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I V L  +  + V+D+GRG+P   H K    ST+E I T LHAGGKF    Y++SGGL
Sbjct: 61  SHIRVILKDDDVVQVIDDGRGMPTGTHAK-TGISTVETIFTVLHAGGKFGGGGYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS+ L V V R   ++ Q+F  G       K     +  GT +TF+ D  
Sbjct: 120 HGVGASVVNALSEWLEVNVHRDGHVYYQRFENGGQPVDKLKVVGDSDITGTIVTFKADKL 179

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   +D   L +  +  A+L+  ++      +      GI  K+ +++ GG+K Y+ 
Sbjct: 180 IFKEGTVYDYDTLNQRIRELAFLNKGLRLSLEDQR-----NGINRKQVYHYEGGIKEYVS 234

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  EI   +         T+E A+ + +     I S+CN I T EGGTHE G
Sbjct: 235 FINKNKTPIHEEIIYVE---DIQQDITIEVAMQYNDGYQSNIYSFCNNINTHEGGTHEEG 291

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R+ALTR I  YA+      K   ++  DD+      I+SV   +P++ GQTKTKL + +
Sbjct: 292 FRMALTRVINNYAKNKGLLKKDDETLSGDDVREGLTAIISVKHPDPQYEGQTKTKLGNAE 351

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLP 450
            ++   N +    D +L++NP  A  +++  I  S  R+  +K RE+ R+   +    LP
Sbjct: 352 VRKIASNIIATSLDKFLLENPDTAKIIVDKAIIASRARMAAKKAREMTRRKNPLEVSNLP 411

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS       E+FIVEGDSAGGSAK  R+R  QA+LPLRGKILNV  +  EKI  N
Sbjct: 412 GKLADCSSKDPSECEIFIVEGDSAGGSAKMGRDRRIQAILPLRGKILNVEKSRLEKILGN 471

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
            +I  ++ A G     ++  + LRY K++IMTDADVDG HI  L+LTF Y+ +  LIE  
Sbjct: 472 AEIRSMITAFGTGIGEEFNLDKLRYHKIVIMTDADVDGGHIRILMLTFLYRYLKPLIENG 531

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
            ++   PPL+ +  G +  Y + +E  + +  +       K  I R+KGLGEM A QL E
Sbjct: 532 FVYAAQPPLYLLKHGKEEHYCYSDEELEDLKTKIG--SGAKYSIQRYKGLGEMNADQLWE 589

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T MD  KR L ++++++ +    +     + LMG K + R +FIQE A ++ D+ 
Sbjct: 590 TTMDPQKRILNQIDLDEAM----EADMIFDMLMGEKVEPRREFIQENAKYVTDLD 640


>gi|300857422|ref|YP_003782405.1| DNA gyrase subunit B [Corynebacterium pseudotuberculosis FRC41]
 gi|300684876|gb|ADK27798.1| DNA gyrase subunit B [Corynebacterium pseudotuberculosis FRC41]
 gi|302205162|gb|ADL09504.1| DNA gyrase subunit B [Corynebacterium pseudotuberculosis C231]
 gi|302329720|gb|ADL19914.1| DNA gyrase subunit B [Corynebacterium pseudotuberculosis 1002]
 gi|308275403|gb|ADO25302.1| DNA gyrase subunit B [Corynebacterium pseudotuberculosis I19]
          Length = 681

 Score =  588 bits (1516), Expect = e-165,   Method: Composition-based stats.
 Identities = 255/691 (36%), Positives = 371/691 (53%), Gaps = 57/691 (8%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +A   Y ASSI ILEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +AG+A  ++
Sbjct: 3   TAEHEYGASSITILEGLEAVRKRPGMYIGSTGERGLHHLVWEVVDNSVDEAMAGHATHVD 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+L  +G + VVDNGRGIPV+ H       T+++++T LHAGGKFD+ +Y +SGGLHGVG
Sbjct: 63  VTLLEDGGVEVVDNGRGIPVDMH--ASGAPTVQVVMTQLHAGGKFDSDSYAVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           ISVVNALS  +   +      + Q FS  +P      +       GT I F PD +IF  
Sbjct: 121 ISVVNALSTRVEADIKLHGKHWYQNFSNAVPDEL--VQGGNARGTGTTIRFWPDAEIFET 178

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK------------------------ 254
              F    + +  Q  A+L+  +    +  +   E+                        
Sbjct: 179 TT-FKFDIIARRLQEMAFLNKGLTLSLTDKRVSDEELELEAIADEGDTAENVSLEKIDSD 237

Query: 255 -----------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
                          +K+ FY+P GLK Y+    +++ +I   I   + +        VE
Sbjct: 238 ADGNIEAPAAPKKREKKKVFYYPEGLKDYVAHLNKSKQVIHPTIVAFEAKGDDH---EVE 294

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISD 360
            A+ W       + ++ NTI T EGGTHE G R ALT  + +YA   +   ++  ++  D
Sbjct: 295 VAMQWNNGYAQSVHTFANTINTIEGGTHEEGFRAALTTLMNRYAREHRLLKEKESNLTGD 354

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D       ++SV + +P+F GQTKTKL + + +  V+  + +    +L  NP EA  ++ 
Sbjct: 355 DCREGLSAVISVRVGDPQFEGQTKTKLGNTEVKGFVQRMVNEHVADWLDANPAEAKTIIN 414

Query: 421 WVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
             +  +  R+  RK R+ V RK+A     LPGKLADC       +EL++VEGDSAGGSAK
Sbjct: 415 KAVSSAHARMAARKARDLVRRKSATDLGGLPGKLADCRSKDPVKSELYVVEGDSAGGSAK 474

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
             R+   QA+LPLRGKILNV  A  +K+  N ++  ++ ALG     ++    LRY K++
Sbjct: 475 AGRDSLYQAILPLRGKILNVEKARLDKVLKNAEVQAIITALGTGIHDEFDINKLRYHKIV 534

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQ 598
           +M DADVDG+HIA+LLLT  ++ M  LIE+ H++L  PPL+++  G     +A+ +  + 
Sbjct: 535 LMADADVDGSHIATLLLTLLFRFMPQLIEEGHVYLAQPPLYKLKWGKGDPGFAYSDAERD 594

Query: 599 KILEEFKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
            +LEE    G+ KI     I R+KGLGEM AS+L ET +D   R L RV+IN      + 
Sbjct: 595 SLLEEGLAQGR-KINKDDGIQRYKGLGEMNASELWETTLDPEFRVLRRVDIND----AQR 649

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
             +  + LMG     R  FI  RA  +  + 
Sbjct: 650 ADEIFSILMGDDVAARRSFITRRAKDVRFLD 680


>gi|1226021|emb|CAA58884.1| DNA gyrase [Mycobacterium smegmatis]
          Length = 675

 Score =  588 bits (1516), Expect = e-165,   Method: Composition-based stats.
 Identities = 250/686 (36%), Positives = 368/686 (53%), Gaps = 47/686 (6%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A    +A   Y A SI ILEGLE VR RPGMYIG T E+ LHHL  EV+DNA+DE +AG+
Sbjct: 2   AAQKNNAPKEYGADSITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGF 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A  ++V +  +G + V D+GRGIPVE H       T+++++T LHAGGKFD  TY +SGG
Sbjct: 62  ATRVDVKIHADGSVEVRDDGRGIPVEMH--ATGMPTIDVVMTQLHAGGKFDGETYAVSGG 119

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS  L  TV R    + Q + R +P     K+ +   + GT I F  DP
Sbjct: 120 LHGVGVSVVNALSTRLEATVLRDGYEWFQYYDRSVPGKL--KQGRETKETGTTIRFWADP 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP--------------- 258
           +IF     ++   + +  Q  A+L+  +    + ++  AE+                   
Sbjct: 178 EIFET-TDYNFETVARRLQEMAFLNKGLTIELTDERVTAEEVVDDVVKDTAEAPKTADEK 236

Query: 259 ----------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
                     +   F++PGGL  Y++     ++ I   I     +  G     VE A+ W
Sbjct: 237 AAEATGPSKVKHRVFHYPGGLVDYVKHINRTKTPIQQSIIDFDGKGPGH---EVEIAMQW 293

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMIS 365
                  + ++ NTI T EGGTHE G R ALT  + +Y   +     +  ++  DD+   
Sbjct: 294 NAGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNRYAKDKKLLKDKDPNLTGDDIREG 353

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP EA  ++   +  
Sbjct: 354 LAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKICNEQLQHWFEANPAEAKTVVNKAVSS 413

Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGGSAK  R+ 
Sbjct: 414 AQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKSGRDS 473

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY K+++M DA
Sbjct: 474 MFQAILPLRGKIINVEKARIDRVLKNTEVQSIITALGTGIHDEFDISKLRYHKIVLMADA 533

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603
           DVDG HI++LLLT  ++ M  L+E  H+FL  PPL+++     +  +A+ +  +  +LE 
Sbjct: 534 DVDGQHISTLLLTLLFRFMKPLVENGHIFLAQPPLYKLKWQRSEPEFAYSDRERDGLLEA 593

Query: 604 FKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
            +  GK KI     I R+KGLGEM A +L ET MD + R L +V ++          +  
Sbjct: 594 GRAAGK-KINVDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELF 648

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
           + LMG   + R  FI   A  +  + 
Sbjct: 649 SILMGEDVEARRSFITRNAKDVRFLD 674


>gi|331266709|ref|YP_004326339.1| DNA gyrase, B subunit [Streptococcus oralis Uo5]
 gi|326683381|emb|CBZ00999.1| DNA gyrase, B subunit [Streptococcus oralis Uo5]
          Length = 648

 Score =  588 bits (1516), Expect = e-165,   Method: Composition-based stats.
 Identities = 252/652 (38%), Positives = 374/652 (57%), Gaps = 22/652 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
               + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ 
Sbjct: 6   KNQQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASH 65

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+V ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHG
Sbjct: 66  IQVFIEPDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHG 124

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS +L V V +   I  Q++ RG  ++ LE      +K GT + F PDP+IF
Sbjct: 125 VGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DKTGTTVHFTPDPEIF 183

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   FD  +L K  Q  A+L+  ++   +  +E  E     + + +++ GG+ +Y++  
Sbjct: 184 TETTTFDFEKLNKRIQELAFLNRGLRISITDRREGLE-----QTKHYHYEGGIASYVEYI 238

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335
            EN+ +I         E       TVE A+ +     E   S+ N I T EGGTHE G R
Sbjct: 239 NENKDVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFR 295

Query: 336 VALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR I  YA   +  +    ++  +D+      ++SV    P+F GQTKTKL + +  
Sbjct: 296 TALTRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVV 355

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
           +       D F  +L++NP  A +++E  ++        +R +    +K+ +    LPGK
Sbjct: 356 KITNRLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGK 415

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++
Sbjct: 416 LADCSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEE 475

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  L  A+G    +++     RY+K+++MTDADVDGAHI +LLLT  Y+ M  ++E  ++
Sbjct: 476 IRSLFTAMGTGFGAEFDVTKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYV 535

Query: 573 FLISPPLFRITQGTKSV-YAHDEEHKQKILEEF---KKHGKGKIEISRFKGLGEMLASQL 628
           ++  PP++ +  G++   Y      ++  L+E       G+ K  I R+KGLGEM   QL
Sbjct: 536 YIAQPPIYGVKVGSEIKEYIQPGADQEIKLQEALARHSEGRSKPTIQRYKGLGEMDDHQL 595

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET MD   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 596 WETTMDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643


>gi|9622089|gb|AAF89615.1|AF167433_1 gyrase B [Thermus thermophilus]
          Length = 634

 Score =  588 bits (1516), Expect = e-165,   Method: Composition-based stats.
 Identities = 265/652 (40%), Positives = 367/652 (56%), Gaps = 29/652 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +YDAS+IR+L+GLE VR RP MYIGGT  +  HHLF E++DNA+DE +AGYA  I V L+
Sbjct: 2   SYDASAIRVLKGLEGVRHRPAMYIGGTGVEGYHHLFKEILDNAVDEALAGYATEILVRLN 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G LTV DNGRGIPV+  P+   K  +E+I  TLH+GGKF+   Y++SGGLHGVG SVV
Sbjct: 62  EDGSLTVEDNGRGIPVDLMPE-EGKPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221
           NALS+   V V R+       FSRG    PL    +  R K GTR+TF+PDP+IFG+   
Sbjct: 121 NALSEWTVVEVFREGKHHRIAFSRGEVTEPLRVVGEAPRGKTGTRVTFKPDPEIFGN-LR 179

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD +++    +  AYL   +K  +   +   E       E F   GG+ ++ +   E   
Sbjct: 180 FDPSKIRARLREVAYLVAGLKLVFQDRQHGKE-------EVFLDKGGVASFAKALAEGED 232

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTR 340
           L+  + F  +          VE      +    EI +Y N I T +GGTH +  + A +R
Sbjct: 233 LLYEKPFLIRG---THGEVEVEVGFLHTQGYNAEILTYANMIPTRDGGTHLTAFKSAYSR 289

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            + +YA+      ++      DDL+     ++SV +  P+F GQTK KL++ +A   V  
Sbjct: 290 ALNQYAKKAGLNKEKGPQPTGDDLLEGLYAVVSVKLPNPQFEGQTKGKLLNPEAGTAVGQ 349

Query: 399 ALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
            + +     L +NP  A  +  + +         R+ +  V R+  +    LPGKLADC 
Sbjct: 350 VVYERLLEILEENPRIAKAVYEKALRAAQAREAARKARELVRRQNPLESDELPGKLADCQ 409

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                  ELFIVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  AG  K   N ++  +V
Sbjct: 410 TENPEEAELFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKAGLSKALKNAEVRAMV 469

Query: 518 QALGCRT----RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            A+G        + +  E LRY K+IIMTDADVDG+HI +LLLTFFY+ M  LIE+ H++
Sbjct: 470 SAIGVAVGGDGEAHFDLEGLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPLIERGHVY 529

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           +  PPL+R+  G K  Y + +E  Q  L+E +       E+ RFKGLGEM   QL ET M
Sbjct: 530 IAQPPLYRLQVGKKVEYLYSDEELQARLKELEGKH---YEVQRFKGLGEMNPEQLWETTM 586

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +  KR L RVE+   L    +  +   KLMG +   R +FI+E A + + + 
Sbjct: 587 NPEKRVLKRVELQDAL----EASELFEKLMGQEVAPRREFIEEHARYAE-LD 633


>gi|1213062|emb|CAA63917.1| DNA gyrase subunit B [Mycobacterium smegmatis str. MC2 155]
          Length = 675

 Score =  588 bits (1516), Expect = e-165,   Method: Composition-based stats.
 Identities = 249/686 (36%), Positives = 367/686 (53%), Gaps = 47/686 (6%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A    +A   Y A SI ILEGLE VR RPGMYIG T E+ LHHL  EV+DNA+DE +AG+
Sbjct: 2   AAQKNNAPKEYGADSITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGF 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A  ++V +  +G + V D+GRGIPVE H       T+++++T LHAGGKFD  TY +SGG
Sbjct: 62  ATRVDVKIHADGSVEVRDDGRGIPVEMH--ATGMPTIDVVMTQLHAGGKFDGETYAVSGG 119

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS  L  TV R    + Q + R +P     K+     + GT I F  DP
Sbjct: 120 LHGVGVSVVNALSTRLEATVLRDGYEWFQYYDRSVPGKL--KQGGETKETGTTIRFWADP 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP--------------- 258
           +IF     ++   + +  Q  A+L+  +    + ++  AE+                   
Sbjct: 178 EIFET-TDYNFETVARRLQEMAFLNKGLTIELTDERVTAEEVVDDVVKDTAEAPKTADEK 236

Query: 259 ----------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
                     +   F++PGGL  Y++     ++ I   I     +  G     VE A+ W
Sbjct: 237 AAEATGPSKVKHRVFHYPGGLVDYVKHINRTKTPIQQSIIDFDGKGPGH---EVEIAMQW 293

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMIS 365
                  + ++ NTI T EGGTHE G R ALT  + +Y   +     +  ++  DD+   
Sbjct: 294 NAGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNRYAKDKKLLKDKDPNLTGDDIREG 353

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP EA  ++   +  
Sbjct: 354 LAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKICNEQLQHWFEANPAEAKTVVNKAVSS 413

Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           ++ R+  RK RE V RK+A     LPGK ADC       +EL++VEGDSAGGSAK  R+ 
Sbjct: 414 AQARIAARKARELVRRKSATDIGGLPGKSADCRSTDPSKSELYVVEGDSAGGSAKSGRDS 473

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA+LPLRGKI+NV  A  +++  N ++  +++ALG     ++    LRY K+++M DA
Sbjct: 474 MFQAILPLRGKIINVEKARIDRVLKNTEVQSIIRALGTGIHDEFDISKLRYHKIVLMADA 533

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603
           DVDG HI++LLLT  ++ M  L+E  H+FL  PPL+++     +  +A+ +  +  +LE 
Sbjct: 534 DVDGQHISTLLLTLLFRFMKPLVENGHIFLAQPPLYKLKWQRSEPEFAYSDRERDGLLEA 593

Query: 604 FKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
            +  GK KI     I R+KGLGEM A +L ET MD + R L +V ++          +  
Sbjct: 594 GRAAGK-KINVDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELF 648

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
           + LMG   + R  FI   A  +  + 
Sbjct: 649 SILMGEDVEARRSFITRNAKDVRFLD 674


>gi|315612864|ref|ZP_07887775.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           sanguinis ATCC 49296]
 gi|315314974|gb|EFU63015.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           sanguinis ATCC 49296]
          Length = 648

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 252/652 (38%), Positives = 374/652 (57%), Gaps = 22/652 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
               + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ 
Sbjct: 6   KNQQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASH 65

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+V ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHG
Sbjct: 66  IQVFIEPDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHG 124

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS +L V V +   I  Q++ RG  ++ LE      +K GT + F PDP+IF
Sbjct: 125 VGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DKTGTTVHFTPDPEIF 183

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   FD  +L K  Q  A+L+  ++   +  +E  E     + + +++ GG+ +Y++  
Sbjct: 184 TETTTFDFEKLNKRIQELAFLNRGLRISITDRREGLE-----QTKHYHYEGGIASYVEYI 238

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335
            EN+ +I         E       TVE A+ +     E   S+ N I T EGGTHE G R
Sbjct: 239 NENKDVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFR 295

Query: 336 VALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR I  YA   +  +    ++  +D+      ++SV    P+F GQTKTKL + +  
Sbjct: 296 TALTRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVV 355

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
           +       D F  +L++NP  A +++E  ++        +R +    +K+ +    LPGK
Sbjct: 356 KITNRLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGK 415

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++
Sbjct: 416 LADCSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEE 475

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  L  A+G    +++     RY+K+++MTDADVDGAHI +LLLT  Y+ M  ++E  ++
Sbjct: 476 IRSLFTAMGTGFGAEFDVTKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYV 535

Query: 573 FLISPPLFRITQGTK-SVYAHDEEHKQKILEEF---KKHGKGKIEISRFKGLGEMLASQL 628
           ++  PP++ +  G++   Y      ++  L+E       G+ K  I R+KGLGEM   QL
Sbjct: 536 YIAQPPIYGVKVGSEFKEYIQPGADQEIKLQEALARHSEGRSKPTIQRYKGLGEMDDHQL 595

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET MD   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 596 WETTMDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643


>gi|154686223|ref|YP_001421384.1| DNA topoisomerase IV subunit B [Bacillus amyloliquefaciens FZB42]
 gi|154352074|gb|ABS74153.1| ParE [Bacillus amyloliquefaciens FZB42]
          Length = 655

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 243/650 (37%), Positives = 362/650 (55%), Gaps = 34/650 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DEV+AGY + I V++ 
Sbjct: 8   DYNEDAIQVLEGLEAVRKRPGMYIGSTDARGLHHLVYEIVDNSVDEVLAGYGDHIIVTIH 67

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V D GRG+P   H     K T E+I T LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 68  KDNSISVQDRGRGMPTGMHK--LGKPTPEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVV 125

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+ L VT+ R   ++ Q+F  G       +K     K GT   F+PDP +F     +
Sbjct: 126 NALSEWLTVTIERDGYVYKQRFENGGKPVTSLEKIGTTKKTGTLTHFKPDPSMFSATV-Y 184

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L +  +  A+L   +K     ++   +       E FY+  G++ ++    E +  
Sbjct: 185 NFDTLSERLRESAFLLKGLKIELIDERNGVK-------EVFYYENGIEAFVAYLNEEKDA 237

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +  E+ + + E    H   V++A  + +     + S+ N + T +GGTHESG + A+TR 
Sbjct: 238 LC-EVVSFEGE---HHDIEVDFAFQFNDGYSENMLSFVNNVRTKDGGTHESGAKTAMTRA 293

Query: 342 IKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397
             +YA       ++  ++   D+      I+SV I E   +F GQTK KL + +A+   +
Sbjct: 294 FNEYARKVALLKEKDKNLEGADIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAAD 353

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLA 454
             + +   ++L +N   AT L++  I+ S+ R   RK RE  R    RK     L GKL 
Sbjct: 354 AVISENLAYFLEENRDTATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLT 413

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
                     EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I 
Sbjct: 414 PAGSRNPAKNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIFKNEEIN 473

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++ A+G    + +  +D+ Y+K+IIMTDAD DGAHI  LLLTFFY+ M  LIE   +F+
Sbjct: 474 TIIHAIGGGVGADFEIDDINYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFI 533

Query: 575 ISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
             PPL+++++G   K +  YA  +E    +L++  K       I R+KGLGEM A QL E
Sbjct: 534 ALPPLYKVSKGSGKKEIIEYAWSDEEMDGVLKKVGK----GYTIQRYKGLGEMNADQLWE 589

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           T M+   RTL+RV+I+         +  +  LMG K + R K+I++  +F
Sbjct: 590 TTMNPESRTLVRVKIDD----AARVERRVTTLMGDKVEPRRKWIEKNVAF 635


>gi|33469296|gb|AAQ19685.1| topoisomerase IV subunit B [Staphylococcus haemolyticus]
          Length = 658

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 234/651 (35%), Positives = 356/651 (54%), Gaps = 31/651 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           ++Y   SI++LEGLE VR RPGMYIG TD++ LHHL  EV+DN++DEV+ GY N I V++
Sbjct: 1   NHYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEVVDNSVDEVLNGYGNEINVTI 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +  +++ DNGRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 61  NQDNSISIEDNGRGMPSGMH--ASGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASV 118

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+ L V + R   I+ Q F  G   +    K     K GT++TF+PDP+IF     
Sbjct: 119 VNALSEWLEVEIHRDGNIYKQSFKNGGVPASGLVKSGKTKKTGTKVTFKPDPEIFKATTT 178

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F+   L +  Q  A+L   +K      +   E+      + +++  G+K ++    E + 
Sbjct: 179 FNFETLSERLQESAFLLKNLKITLKDLRNGKERE-----DVYHYEEGIKEFVSYVNEGKE 233

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
           ++             ++   V+ A  + ++    I S+ N + T +GGTHE G + A+TR
Sbjct: 234 VLHDVTMFTGA----SNGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTR 289

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
               YA       ++  ++  +D+      ++SV I E   +F GQTK+KL + +A+  V
Sbjct: 290 VFNDYARRINELKEKDKNLDGNDIREGLTAVISVRIPEELLQFEGQTKSKLGTSEARSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKL 453
           ++ + D    YL +    +  L++  I+  + R   RK RE  R     K     L GKL
Sbjct: 350 DSVVSDKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKL 409

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  E I  N++I
Sbjct: 410 TPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEI 469

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++  +G    + ++ ED  Y ++IIMTDAD DGAHI  LLLTFF++ M  L++   +F
Sbjct: 470 NTIIHTIGAGVGNDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVF 529

Query: 574 LISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+++ +G     +  YA  ++  +K+ ++  K       + R+KGLGEM   QL 
Sbjct: 530 IALPPLYKLEKGKGKSKQVEYAWTDDELEKLQKKLGK----GFMLQRYKGLGEMNPEQLW 585

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV+I  ++ S K     +  LMG K   R ++I+    F
Sbjct: 586 ETTMNPETRTLIRVQIEDEMRSSKR----VTTLMGDKVAPRREWIESHVEF 632


>gi|139473931|ref|YP_001128647.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes str.
           Manfredo]
 gi|134272178|emb|CAM30423.1| topoisomerase IV subunit B [Streptococcus pyogenes str. Manfredo]
          Length = 650

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 243/653 (37%), Positives = 372/653 (56%), Gaps = 34/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V +
Sbjct: 10  NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G ++V D+GRG+P   H       T+++I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 70  NKDGSVSVADSGRGMPTGQH--AMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 127

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F   G P++ L+K     ++K GT +TF PD KIF   
Sbjct: 128 VNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFST- 186

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   VK   +  +        P  EEF++  G++ +++   E+
Sbjct: 187 IDFKFNTISERLKESAFLLKNVKMSLTDLRGDD-----PIIEEFHYENGVQDFVEYLNED 241

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++  I+    ++       VE A+ + +   +   S+ N + T +GG+HE+GL+ A+
Sbjct: 242 KETLTPVIYMEGQDQD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ + E   +F GQTK KL S  A+ 
Sbjct: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARH 357

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            VE+ + +    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 358 IVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 417

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL       A   EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N+
Sbjct: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  +V  +G    + +  ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 478 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 537

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     K  YA  +   + +  EF K       + R+KGLGEM A+Q
Sbjct: 538 VYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI----LQRYKGLGEMNANQ 593

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET MD   RTL+RV I+     L   +  ++ LMG KA  R ++I++   F
Sbjct: 594 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 642


>gi|322411454|gb|EFY02362.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 650

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 256/652 (39%), Positives = 375/652 (57%), Gaps = 24/652 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +  + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A  I
Sbjct: 9   EEKAQDYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFATHI 68

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +  +TVVDNGRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGV
Sbjct: 69  QVFIEADNSITVVDNGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS +L V V +   I  Q+F RG  ++ LE          T + F PD +IF 
Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVIGTTDVTG-TTVHFTPDSEIFT 186

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   FD   L K  Q  A+L+  +K   +  +   E     ++E F++ GG+ +Y++   
Sbjct: 187 ETTEFDYKVLAKRIQELAFLNRGLKISITDKRSGME-----QEEHFHYEGGIGSYVEFLN 241

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           + + +I         E +G     VE A+ +       + S+ N I T EGGTHE G R 
Sbjct: 242 DKKEVIFDTPIYTDGELEGI---AVEVAMQYTTSYHEVVMSFANNIHTHEGGTHEQGFRT 298

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA+  +   +   ++  +D+      ++SV    P+F GQTKTKL + +  +
Sbjct: 299 ALTRVINDYAKKNKILKENDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
                  + F  +L++NP  A K++E  I  S+ R+  ++ RE   +K+ +    LPGKL
Sbjct: 359 ITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS N A   ELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I
Sbjct: 419 ADCSSNDASQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 478

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             L  A+G    + +     RY+K++IMTDADVDGAHI +LLLT  Y+ M  ++E  +++
Sbjct: 479 RSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVY 538

Query: 574 LISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           +  PP++ +  G++   Y       EE  +  LE++   G+ K  + R+KGLGEM   QL
Sbjct: 539 IAQPPIYGVKVGSEIKEYIQPGIEQEEQLKTALEKYS-VGRSKPTVQRYKGLGEMDDHQL 597

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET MD   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 598 WETTMDPENRLMARVTVDD----AAEADKVFDMLMGDRVEPRREFIEENAVY 645


>gi|148821196|ref|YP_001285950.1| DNA gyrase subunit B [Mycobacterium tuberculosis F11]
 gi|148719723|gb|ABR04348.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis F11]
          Length = 714

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 253/686 (36%), Positives = 368/686 (53%), Gaps = 47/686 (6%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A   + A D Y A+SI ILEGLE VR RPGMYIG T E+ LHHL  EV+DNA+DE +AGY
Sbjct: 41  AAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGY 100

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A  + V L  +G + V D+GRGIPV  H       T+++++T LHAGGKFD+  Y ISGG
Sbjct: 101 ATTVNVVLLEDGGVEVADDGRGIPVATH--ASGILTVDVVMTQLHAGGKFDSDAYAISGG 158

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS  L V + R    +SQ + +  PL    K+     K G+ + F  DP
Sbjct: 159 LHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLGL--KQGAPTKKTGSTVRFWADP 216

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY------------------ 255
            +F     +D   + +  Q  A+L+  +    + ++   ++                   
Sbjct: 217 AVFET-TEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASER 275

Query: 256 -------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
                     +   F++PGGL  +++     ++ I S I     +  G     VE A+ W
Sbjct: 276 AAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGH---EVEIAMQW 332

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
                  + ++ NTI T EGGTHE G R ALT  + KYA+  +    +  ++  DD+   
Sbjct: 333 NAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREG 392

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  ++   +  
Sbjct: 393 LAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSS 452

Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGGSAK  R+ 
Sbjct: 453 AQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDS 512

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY K+++M DA
Sbjct: 513 MFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRYHKIVLMADA 572

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603
           DVDG HI++LLLT  ++ M  LIE  H+FL  PPL+++        +A+ +  +  +LE 
Sbjct: 573 DVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEA 632

Query: 604 FKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
             K GK KI     I R+KGLGEM A +L ET MD + R L +V ++          +  
Sbjct: 633 GLKAGK-KINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELF 687

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
           + LMG   D R  FI   A  +  + 
Sbjct: 688 SILMGEDVDARRSFITRNAKDVRFLD 713


>gi|94994199|ref|YP_602297.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS10750]
 gi|94547707|gb|ABF37753.1| Topoisomerase IV subunit B [Streptococcus pyogenes MGAS10750]
          Length = 650

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 243/653 (37%), Positives = 372/653 (56%), Gaps = 34/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V +
Sbjct: 10  NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G ++V D+GRG+P   H       T+++I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 70  NKDGSVSVADSGRGMPTGQH--AMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 127

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F   G P++ L+K     ++K GT +TF PD KIF   
Sbjct: 128 VNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFST- 186

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   VK   +  +        P  EEF++  G++ +++   E+
Sbjct: 187 IDFKFNTISERLKESAFLLKNVKMSLTDLRGDD-----PIIEEFHYENGVQDFVEYLNED 241

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++  I+    ++       VE A+ + +   +   S+ N + T +GG+HE+GL+ A+
Sbjct: 242 KETLTPVIYMEGQDQD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ + E   +F GQTK KL S  A+ 
Sbjct: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 357

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            VE+ + +    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 358 IVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 417

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL       A   EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N+
Sbjct: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  +V  +G    + +  ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 478 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 537

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     K  YA  +   + +  EF K       + R+KGLGEM A+Q
Sbjct: 538 VYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI----LQRYKGLGEMNANQ 593

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET MD   RTL+RV I+     L   +  ++ LMG KA  R ++I++   F
Sbjct: 594 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 642


>gi|295425411|ref|ZP_06818109.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064913|gb|EFG55823.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
           amylolyticus DSM 11664]
          Length = 653

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 246/654 (37%), Positives = 366/654 (55%), Gaps = 20/654 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +  +D Y+AS I++L GLE VR RPGMYIG T  + LHHL  E+IDN++DE +AG+A  I
Sbjct: 15  EKEADKYNASQIQVLGGLEAVRKRPGMYIGTTSSQGLHHLVWEIIDNSIDERLAGFATKI 74

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           E++++ +G +TV D+GRGIPV+   K   +  LE + T LHAGGKF    Y++SGGLHGV
Sbjct: 75  EITVNEDGSVTVQDDGRGIPVDIQAK-TGRPALETVFTVLHAGGKFGGGGYKVSGGLHGV 133

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIF 216
           G SVVNALS +L VTV R    +   F  G     +++   V  ++ GT + F PDP IF
Sbjct: 134 GASVVNALSTKLDVTVVRDGKKYFIDFDHGRVKDEMKQIGTVPLDQHGTTVHFYPDPDIF 193

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   FD   L    +  A+L+  +K  ++  ++        E + + + GG+K Y+   
Sbjct: 194 TETTTFDDKILKNRIRELAFLNKGLKLTFTDKRKD-----TAETDVYLYEGGIKEYVAFL 248

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
             +  ++  +    + +  G     VE A+ +       + ++ N I T EGG HE+G +
Sbjct: 249 NRDTEVLFDDPIYVEGDYDGI---NVEVALQYTNGYKTTLMTFANNIHTYEGGMHEAGFK 305

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR +  YA   +    +  ++  +D+      ++SV    P+F GQTKTKL + DA+
Sbjct: 306 TALTRVVNDYAHKAKILKDKDDNLSGEDIREGMTAVVSVKHPNPQFEGQTKTKLGNSDAR 365

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRKLRLPGK 452
             V+ A  + F  +L++NP    K++E   +        +R +    +K+ +    LPGK
Sbjct: 366 TAVDKAFSETFSRFLMENPSVGRKIVEKAQLAERARTAAKRAREVTRKKSGLEIANLPGK 425

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LAD + N    +ELFIVEG+SAGGSAKQAR+R  QA+LP+RGKILNV  A  ++I  NQ+
Sbjct: 426 LADNTSNDPSISELFIVEGNSAGGSAKQARSRLTQAILPIRGKILNVEKASMDRILANQE 485

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  L  ALG    + +     RY K+IIMTDADVDGAHI +LLLT FY  M  +IE+ ++
Sbjct: 486 IRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYNYMRPMIEKGYV 545

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL+++ QG    Y   +E     L   +     K  + R+KGLGEM   QL +T 
Sbjct: 546 YIARPPLYQVRQGKVVKYLDTDEELHDYLGSLQPS--PKPIVQRYKGLGEMDPEQLWDTT 603

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           M+   R L RV         KD  +  + LMG +   R KFI+  A +++++  
Sbjct: 604 MNPENRRLDRVSPEY----AKDADEVFDLLMGNEVAPRRKFIETNAKYVENLDA 653


>gi|94988398|ref|YP_596499.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS9429]
 gi|94992280|ref|YP_600379.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS2096]
 gi|94541906|gb|ABF31955.1| topoisomerase IV subunit B [Streptococcus pyogenes MGAS9429]
 gi|94545788|gb|ABF35835.1| Topoisomerase IV subunit B [Streptococcus pyogenes MGAS2096]
          Length = 650

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 241/653 (36%), Positives = 372/653 (56%), Gaps = 34/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V +
Sbjct: 10  NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G ++V D+GRG+P   H       T+++I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 70  NKDGSVSVADSGRGMPTGQH--AMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 127

Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R  +++ Q+F  G  P++ L+K     ++K GT +TF PD KIF   
Sbjct: 128 VNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTI 187

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   VK   +  +        P  EEF++  G++ +++   E+
Sbjct: 188 -DFKFNTISERLKESAFLLKNVKMSLTDLRGDD-----PIIEEFHYENGVQDFVEYLNED 241

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++  I+    ++       VE A+ + +   +   S+ N + T +GG+HE+GL+ A+
Sbjct: 242 KETLTPVIYMEGQDQD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ + E   +F GQTK KL S  A+ 
Sbjct: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 357

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451
            VE+ + +    +L++N   A+ L+   I+  + R   RK R+ +R     K       G
Sbjct: 358 IVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 417

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL       A   EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N+
Sbjct: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  +V  +G    + +  ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 478 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 537

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     K  YA  +   + + +EF K       + R+KGLGEM A+Q
Sbjct: 538 VYIALPPLYKMSKGKGKTEKVSYAWTDGELEDLRKEFGKGAI----LQRYKGLGEMNANQ 593

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET MD   RTL+RV I+     L   +  ++ LMG KA  R ++I++   F
Sbjct: 594 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 642


>gi|50914074|ref|YP_060046.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS10394]
 gi|50903148|gb|AAT86863.1| Topoisomerase IV subunit B [Streptococcus pyogenes MGAS10394]
          Length = 650

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 242/653 (37%), Positives = 371/653 (56%), Gaps = 34/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V +
Sbjct: 10  NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G ++V D+GRG+P   H       T+++I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 70  NKDGSVSVADSGRGMPTGQH--AMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 127

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F   G P++ L+K     ++K GT +TF PD KIF   
Sbjct: 128 VNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFST- 186

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   VK   +  +        P  EEF++  G++ +++   E+
Sbjct: 187 IDFKFNTISERLKESAFLLKNVKMSLTDLRGDD-----PIIEEFHYENGVQDFVEYLNED 241

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++  I+    ++       VE A+ + +   +   S+ N + T +GG+HE+GL+ A+
Sbjct: 242 KETLTPVIYMEGQDQD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ + E   +F GQTK KL S  A+ 
Sbjct: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 357

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            VE+ + +    +L++N    + L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 358 IVESIVSEKLTFFLLENGEVTSHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 417

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL       A   EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N+
Sbjct: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  +V  +G    + +  ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 478 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 537

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     K  YA  +   + +  EF K       + R+KGLGEM A+Q
Sbjct: 538 VYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI----LQRYKGLGEMNANQ 593

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET MD   RTL+RV I+     L   +  ++ LMG KA  R ++I++   F
Sbjct: 594 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 642


>gi|38232647|ref|NP_938414.1| DNA gyrase subunit B [Corynebacterium diphtheriae NCTC 13129]
 gi|38198905|emb|CAE48516.1| DNA gyrase subunit B [Corynebacterium diphtheriae]
          Length = 685

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 258/695 (37%), Positives = 375/695 (53%), Gaps = 57/695 (8%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            +  +A   Y ASSI ILEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +AGYA
Sbjct: 3   ASVATAEHEYGASSITILEGLEAVRKRPGMYIGSTGERGLHHLVWEVVDNSVDEAMAGYA 62

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             ++V+L  +G + VVDNGRGIPVE HP      T+++++T LHAGGKFD+ +Y +SGGL
Sbjct: 63  THVDVTLLADGGVEVVDNGRGIPVEMHP--SGAPTVQVVMTQLHAGGKFDSDSYAVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVGISVVNALS  +   + R    + Q FS  IP   +E         GT I F PD +
Sbjct: 121 HGVGISVVNALSTRVEADIKRDGKHWLQNFSMAIPDPLVE--GGNARGTGTTIRFWPDAE 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI----------------- 257
           IF     F    + +  Q  A+L+  +       +   E+  +                 
Sbjct: 179 IFETTT-FKFETISRRLQEMAFLNKGLTITLVDKRVTDEELELEAIAEEGDTAENVSLDQ 237

Query: 258 ------------------PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
                              +K+ F++P GLK Y+    +++ +I   I +   +      
Sbjct: 238 IDVDADGNIDAPAAPKKREKKKVFFYPDGLKDYVAHLNKSKQVIHPTIISFDAKGNDH-- 295

Query: 300 GTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
             VE A+ W     + + ++ NTI T EGGTHE G R ALT  + +YA   +   ++  +
Sbjct: 296 -EVEVAMQWNNSYSQSVHTFANTINTFEGGTHEEGFRAALTSLMNRYAREHKLLKEKEAN 354

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           +  DD       ++SV + +P+F GQTKTKL + + +  V+  + +    +L  NP EA 
Sbjct: 355 LTGDDCREGLSAVISVRVGDPQFEGQTKTKLGNTEVKGFVQRMVNEHIADWLDANPAEAK 414

Query: 417 KLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            ++   +  +  R+  RK R+ V RK+A     LPGKLADC       +EL+IVEGDSAG
Sbjct: 415 TIINKAVSSAHARVAARKARDLVRRKSATDLGGLPGKLADCRSKDPEKSELYIVEGDSAG 474

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           GSAK  R+   QA+LPLRGKILNV  A  +K+  N ++  ++ ALG     ++  + LRY
Sbjct: 475 GSAKAGRDSLYQAILPLRGKILNVEKARLDKVLKNAEVQAIITALGTGIHDEFDIKKLRY 534

Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDE 594
            K+++M DADVDG+HIA+LLLT  ++ M  LIE+ H++L  PPL+++  G  +  +A+ +
Sbjct: 535 HKIVLMADADVDGSHIATLLLTLLFRFMPQLIEEGHVYLAQPPLYKLKWGKGEPGFAYSD 594

Query: 595 EHKQKILEEFKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
             +  +L E     + KI     I R+KGLGEM AS+L ET +D   R L RV+I     
Sbjct: 595 AERDTLLAEGLAQNR-KINKDDGIQRYKGLGEMNASELWETTLDPKYRVLRRVDITD--- 650

Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             +   +  + LMG     R  FI  RA  +  + 
Sbjct: 651 -AQRADEIFSILMGDDVSARRSFITRRAKDVRFLD 684


>gi|218133091|ref|ZP_03461895.1| hypothetical protein BACPEC_00953 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991964|gb|EEC57968.1| hypothetical protein BACPEC_00953 [Bacteroides pectinophilus ATCC
           43243]
          Length = 640

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 249/656 (37%), Positives = 354/656 (53%), Gaps = 26/656 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A + YD SSI ILEGLE VR RPGMYIG    K L+HL  E+ DNA+DE +AG+ + I V
Sbjct: 2   AGNKYDESSISILEGLEAVRKRPGMYIGSVGTKGLNHLIYEIADNAVDEHLAGFCSEITV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L+ +G  T+ DNGRGIP   HPK    ST++++ T LHAGGKF +  Y+ISGGLHGVG 
Sbjct: 62  TLNADGSATIADNGRGIPTGIHPKA-GISTVDVVFTMLHAGGKFGDGGYKISGGLHGVGA 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPDPKIFGD 218
           SVVNALS  L VT+ R   ++ Q++ +G     L +    R    G+ ITF PD +IF  
Sbjct: 121 SVVNALSVWLEVTIKRDGIVWHQRYEKGRRTGELTQTGTCRKHDTGSTITFLPDGEIFEK 180

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F A  +       AYL+  +   +   + I  +    + E F+   G+K+Y++   E
Sbjct: 181 TV-FKAEAIKSRLHETAYLNPGLTIHFEDKRHI--ETPGDDIETFHEEDGIKSYIKDLNE 237

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVA 337
            +  I       K +++G     VE A  +  E  E    +CN I T EGGTH +G +  
Sbjct: 238 GKECIHDI-IYFKKKREGI---EVEAAFQFVNEFEENVLGFCNNIYTQEGGTHITGFKSK 293

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            T  I +YA        +  +    D+      I++V   EP F GQTKTKL + DA + 
Sbjct: 294 FTTIINQYARELGILKDKDANFTGLDVRNGMTAIIAVKHPEPRFEGQTKTKLDNPDAGKV 353

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           V     +    +  +N      ++    + ++ R    K +              GKLA+
Sbjct: 354 VAEITGEELQLFFDKNLETLKSVIACAEKSAKIRKAEEKAKTNMLVKPKFSYDTNGKLAN 413

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C        E+FIVEGDSAGGSAK ARNR  QA+LP+RGKILNV  A  +K+  N +I  
Sbjct: 414 CESRNPEECEVFIVEGDSAGGSAKTARNRRTQAILPIRGKILNVEKASIDKVLANAEIKT 473

Query: 516 LVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++ + GC       + +    LRY K+IIMTDADVDGAHI +LLLTFFY+ M +LI Q H
Sbjct: 474 MITSFGCGFLEGYGNDFDISRLRYNKIIIMTDADVDGAHIDTLLLTFFYRFMPELINQGH 533

Query: 572 LFLISPPLFR-ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           +++ +PPL++ I +  +  Y +D+    K LE+++K   G   + R+KGLGEM A QL E
Sbjct: 534 VYIATPPLYKAIPKKGEEQYIYDD----KALEKYRKTHTGAFTLQRYKGLGEMDAQQLWE 589

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           T ++   R L +VEI     + + T    + LMG+    R +FI   A+  + +  
Sbjct: 590 TTLNPETRILKQVEIEDARMATEVT----SMLMGSDVAPRREFIYTHANEAE-IDA 640


>gi|15674930|ref|NP_269104.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes M1 GAS]
 gi|13622073|gb|AAK33825.1| putative DNA topoisomerase IV (subunit B) [Streptococcus pyogenes
           M1 GAS]
          Length = 650

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 243/653 (37%), Positives = 373/653 (57%), Gaps = 34/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V +
Sbjct: 10  NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G ++V D+GRG+P   H       T+++I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 70  NKDGSVSVADSGRGMPTGQH--AMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 127

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R  +++ Q+F   G P++ L+K     ++K GT +TF PD KIF   
Sbjct: 128 VNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFST- 186

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   VK   +  +        P  EEF++  G++ +++   E+
Sbjct: 187 IDFKFNTISERLKESAFLLKNVKMSLTDLRGDD-----PIIEEFHYENGVQDFVEYLNED 241

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++  I+    ++       VE A+ + +   +   S+ N + T +GG+HE+GL+ A+
Sbjct: 242 KETLTPVIYMEGQDQD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ + E   +F GQTK KL S  A+ 
Sbjct: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 357

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            VE+ + +    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 358 IVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 417

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL       A   EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N+
Sbjct: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  +V  +G    + +  ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 478 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 537

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     K  YA  +   + +  EF K       + R+KGLGEM A+Q
Sbjct: 538 VYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI----LQRYKGLGEMNANQ 593

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET MD   RTL+RV I+     L   +  ++ LMG KA  R ++I++   F
Sbjct: 594 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 642


>gi|322376370|ref|ZP_08050863.1| DNA gyrase, B subunit [Streptococcus sp. M334]
 gi|321282177|gb|EFX59184.1| DNA gyrase, B subunit [Streptococcus sp. M334]
          Length = 648

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 252/648 (38%), Positives = 374/648 (57%), Gaps = 22/648 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+AN I+V 
Sbjct: 10  AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFANHIQVF 69

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGVG S
Sbjct: 70  IEPDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 128

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L V V +   I  Q++ RG  ++ LE      ++ GT + F PDP+IF +  
Sbjct: 129 VVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFTPDPEIFTETT 187

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD  +L K  Q  A+L+  ++   +  +E  E     + + +++ GG+ +Y++   EN+
Sbjct: 188 TFDFDKLNKRIQELAFLNRGLRISITDKREGLE-----QTKHYHYEGGIASYVEYINENK 242

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
            +I         E       TVE A+ +     E   S+ N I T EGGTHE G R ALT
Sbjct: 243 DVIFETPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALT 299

Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA   +  +    ++  +D+      ++SV    P+F GQTKTKL + +  +   
Sbjct: 300 RVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 359

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
               D F  +L++NP  A +++E  ++        +R +    +K+ +    LPGKLADC
Sbjct: 360 RLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADC 419

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I  L
Sbjct: 420 SSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 479

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    +++     RY+K+++MTDADVDGAHI +LLLT  Y+ M  ++E  ++++  
Sbjct: 480 FTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQ 539

Query: 577 PPLFRITQGTKSV-YAHDEEHKQKILEEFKK---HGKGKIEISRFKGLGEMLASQLKETA 632
           PP++ +  G++   Y      ++  L+E       G+ K  I R+KGLGEM   QL ET 
Sbjct: 540 PPIYGVKVGSEIKEYIQPGADQEIKLQEALARYSEGRTKPTIQRYKGLGEMDDHQLWETT 599

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           MD   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 600 MDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643


>gi|224500820|ref|ZP_03669169.1| DNA topoisomerase IV subunit B [Listeria monocytogenes Finland
           1988]
          Length = 647

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 239/647 (36%), Positives = 356/647 (55%), Gaps = 35/647 (5%)

Query: 47  SSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGF 106
            SI++LEGLE VR RP MYIG TD + LHHL  E++DN++DE +AG+   I V+L  +G 
Sbjct: 1   DSIQVLEGLEAVRKRPAMYIGSTDVRGLHHLVYEIVDNSVDETLAGFGKKIVVTLHEDGS 60

Query: 107 LTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGVGISVVNAL 165
           ++V D GRG+PV  H     KST+E+ILT LHAGGKF     Y+ SGGLHGVG SVVNAL
Sbjct: 61  VSVSDEGRGMPVGMHK--TGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGVGSSVVNAL 118

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225
           S+ L VT+ R    + QKF  G       KK       GT I F+PDP IF     F+  
Sbjct: 119 SEWLVVTINRDGATYQQKFKDGGKPDGTLKKIGKSKATGTTIRFKPDPAIFPTT-SFNYE 177

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
            L +  +  A+L   +      ++       +   E F+F  G+K +++   E + ++  
Sbjct: 178 TLSERLRESAFLLKGMLIELIDER-------VGMAEAFHFEEGVKNFVEYINEGKDVLHP 230

Query: 286 EIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKK 344
              + + E        VE A  + +     I S+ N + T   G+HESG++ A+TR    
Sbjct: 231 VA-SFEGENATI---EVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMTRIFND 286

Query: 345 YAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENAL 400
           YA       ++  ++   D+      +LS+ + E   +F GQTK KL + +A++ V+  +
Sbjct: 287 YARRVNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQAVDAVV 346

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLADCS 457
            +   ++L +NP  ++ L++  ++  E R   RK RE  R    +K     L GKL    
Sbjct: 347 AEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQ 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
               +  EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I  N++I  ++
Sbjct: 407 SRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTII 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
             +G    +++  ED  Y+KV+IMTDAD DGAHI  LLLTFFY+ M  L+E   +F+  P
Sbjct: 467 HTVGAGVGTEFDVEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIALP 526

Query: 578 PLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           PL+++++G   K V  YA  +E     +++  K       I R+KGLGEM A QL ET M
Sbjct: 527 PLYKVSRGSGKKEVIEYAWTDEELDSAIQKIGK----GYMIQRYKGLGEMNADQLWETTM 582

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           + + RTL+RV ++         +  +  LMG K + R ++I++   F
Sbjct: 583 NPDTRTLIRVRVDD----SARAERRVATLMGDKVEPRRQWIEKHVEF 625


>gi|300781943|ref|YP_003762234.1| DNA gyrase subunit B [Amycolatopsis mediterranei U32]
 gi|299791457|gb|ADJ41832.1| DNA gyrase subunit B [Amycolatopsis mediterranei U32]
          Length = 655

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 254/659 (38%), Positives = 375/659 (56%), Gaps = 27/659 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+ASSI +LEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +AG+A  +EV+L 
Sbjct: 7   EYNASSITVLEGLEAVRKRPGMYIGSTGERGLHHLVQEVVDNSVDEAMAGHATKVEVTLL 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G + VVD+GRGIPV+ HPK   K TLE++LT LHAGGKFD+ +Y +SGGLHGVG+SVV
Sbjct: 67  ADGGVRVVDDGRGIPVDMHPK-EQKPTLEVVLTVLHAGGKFDSDSYAVSGGLHGVGVSVV 125

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS +L   V      + Q+++  IP  PLE         GT ITF  D  IF     +
Sbjct: 126 NALSKKLLAEVKYGGRSWRQEYTDQIP-GPLEDLGPASE-TGTTITFWADGDIFET-TTY 182

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDK--------EIAEKYGIPEKEEFYFPGGLKTYLQ 274
           +   + +  Q  A+L+  +      ++        +   K    +++ + +PGGL+ +++
Sbjct: 183 NFETISRRLQEMAFLNKGLTLSLRDERVADEEAEADAEGKVARVKEKTYCYPGGLEDFVK 242

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               ++  I S + + + +  G     VE A+ W     P + ++ NTI T EGGTHE G
Sbjct: 243 HINGSKDPIHSSVISFEAKGTG---LEVEVAMQWNNGFTPSVYTFANTINTHEGGTHEEG 299

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  YA   +   ++  ++  DD+      I+S+ + EP+F GQTKTKL + +
Sbjct: 300 FRAALTRVVNTYARDKKLLKEKDTNLTGDDVREGLAAIVSIKLSEPQFEGQTKTKLGNSE 359

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
           A+  V+    +    +  +NP EA  ++   I  ++ R+  RK R+ V RK A+    LP
Sbjct: 360 AKTFVQQTSNEWLADWFERNPTEAKTIINKSISSAQARMAARKARDLVRRKGALDIGGLP 419

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL DC        EL+IVEGDSAGGSAK+ R+   QA+LP+RGKI+NV  A  +++  N
Sbjct: 420 GKLKDCRSTKPEECELYIVEGDSAGGSAKEGRDSMYQAILPIRGKIINVEKARIDRVLKN 479

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
            ++  L+ ALG     ++  E LRY K+++M DADVDG HI +LLLT  ++ M  LIE  
Sbjct: 480 TEVQSLITALGTGIHDEFDLEKLRYHKIVLMADADVDGQHITTLLLTLLFRFMTPLIEHG 539

Query: 571 HLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEMLAS 626
           H+FL  PPL++I     +  YA+ +  +  +++   + GK   +   I R+KGLGEM A 
Sbjct: 540 HVFLSRPPLYKIKWPRAEPEYAYSDRERDAVIQAGVEAGKRLPKDDAIQRYKGLGEMNAE 599

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +L ET MD   R L +V ++          +  + LMG   + R  FI   A  +  + 
Sbjct: 600 ELWETTMDPANRLLGQVTLDD----AAQADELFSVLMGEDVEARRSFITRNAKDVRFLD 654


>gi|306825577|ref|ZP_07458916.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
 gi|304431938|gb|EFM34915.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
          Length = 648

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 252/653 (38%), Positives = 374/653 (57%), Gaps = 24/653 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
               + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ 
Sbjct: 6   KNQQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASH 65

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+V ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHG
Sbjct: 66  IQVLIEPDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHG 124

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS +L V V +   I+ Q++ RG  ++ LE      ++ GT + F PDP+IF
Sbjct: 125 VGSSVVNALSTQLDVRVHKNGKIYYQEYHRGNVVADLEVIGDT-DRTGTTVHFTPDPEIF 183

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   FD  +L K  Q  A+L+  ++   +  +E  E     + + +++ GG+ +Y++  
Sbjct: 184 TETTTFDFDKLNKRIQELAFLNRGLRISITDKREGLE-----QTKHYHYEGGIASYVEYI 238

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335
            EN+ +I         E       TVE A+ +     E   S+ N I T EGGTHE G R
Sbjct: 239 NENKDVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFR 295

Query: 336 VALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR I  YA   +  +    ++  +D+      ++SV    P+F GQTKTKL + +  
Sbjct: 296 TALTRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVV 355

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
           +       D F  +L++NP  A +++E  ++        +R +    +K+ +    LPGK
Sbjct: 356 KITNRLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGK 415

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++
Sbjct: 416 LADCSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEE 475

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  L  A+G    +++     RY+K+++MTDADVDGAHI +LLLT  Y+ M  ++E  ++
Sbjct: 476 IRSLFTAMGTGFGAEFDVTKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYV 535

Query: 573 FLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           ++  PP++ +  G++   Y       E   Q+ L      G+ K  I R+KGLGEM   Q
Sbjct: 536 YIAQPPIYGVKVGSEIKEYIQPGANQEIKLQEALAR-HSEGRSKPTIQRYKGLGEMDDHQ 594

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET MD   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 595 LWETTMDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643


>gi|239980782|ref|ZP_04703306.1| DNA gyrase subunit B [Streptomyces albus J1074]
 gi|291452640|ref|ZP_06592030.1| DNA topoisomerase subunit B [Streptomyces albus J1074]
 gi|291355589|gb|EFE82491.1| DNA topoisomerase subunit B [Streptomyces albus J1074]
          Length = 701

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 255/707 (36%), Positives = 381/707 (53%), Gaps = 29/707 (4%)

Query: 1   MTDDSI--DLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPV 58
           M D     +   +  P  + +S   + +  +  +P  A   A  +YDAS+I +LEGL+ V
Sbjct: 1   MADSGNPNENIPSTGPGEEDASGTPQTAESVIAAPEGAAIEAPVSYDASAITVLEGLDAV 60

Query: 59  RMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPV 118
           R RPGMYIG T E+ LHH+  EV+DN++DE +AG+A+ I+V++  +G + V+DNGRGIPV
Sbjct: 61  RKRPGMYIGSTGERGLHHMVQEVVDNSVDEALAGHADFIDVTILADGGVRVIDNGRGIPV 120

Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178
              P    K  +E++LT LHAGGKF    Y +SGGLHGVG+SVVNALS  + V +     
Sbjct: 121 GIVP-SEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVSVVNALSTRVAVEIRTDGH 179

Query: 179 IFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLS 238
            +SQ + RG+P +PL +  +   + GT +TF  D  IF     +    L +  Q  A+L+
Sbjct: 180 HWSQSYERGVPTAPLAQ-GEATEETGTSVTFWADSSIFET-TDYSFETLSRRFQEMAFLN 237

Query: 239 GRVKTCWSCDKEIAE-------------KYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
             +    + ++  A+             +   P    +++ GG+  ++      +  +  
Sbjct: 238 KGLTIKLTDERASAKATAGADSDEATAGEPEEPRTVTYHYEGGIVDFVTYLNSRKGEVIH 297

Query: 286 EIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKK 344
                   +      +VE A+ W     E + S+ NTI T EGGTHE G R ALT  + K
Sbjct: 298 PTVIDIEAEDKDRLLSVEVAMQWNGGYSEGVYSFANTIHTHEGGTHEEGFRGALTTLVNK 357

Query: 345 YAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRD 402
           YA   +    +  ++  DD+      I+SV + EP+F GQTKTKL + +A+  V+  + +
Sbjct: 358 YARDRKLLRDKDDNLTGDDIREGLTAIISVKLGEPQFEGQTKTKLGNTEAKTFVQKVVYE 417

Query: 403 PFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIA 461
               +  +NP EA  ++   I  +  R+  RK R++ R+   +    LPGKL+DC  N  
Sbjct: 418 HLADWFDRNPNEAADIIRKGIAAATARVAARKARDLTRRKGLLETASLPGKLSDCQSNDP 477

Query: 462 HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
              E+FIVEGDSAGGSAK  R+   QA+LP+RGKILNV  A  +KI +NQ+I  L+ A G
Sbjct: 478 TKCEIFIVEGDSAGGSAKSGRDPMYQAILPIRGKILNVEKARIDKILHNQEIQALISAFG 537

Query: 522 CRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581
                 +  E LRY K+I+M DADVDG HI +LLLTF ++ M  L+E  H+FL  PPL++
Sbjct: 538 TGVHEDFDIEKLRYHKIILMADADVDGQHINTLLLTFLFRFMRPLVEAGHVFLSRPPLYK 597

Query: 582 ITQGTKSV-YAHDEEHKQKILEEFKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKR 638
           I        YA+ +  +  ++   ++ GK      + RFKGLGEM A +L+ T MD   R
Sbjct: 598 IKWTRDDFQYAYSDRERDALIALGREQGKRIRDDSVQRFKGLGEMNAEELRITTMDQEHR 657

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            L +V ++          D  + LMG   + R +FIQ  A  +  + 
Sbjct: 658 VLGQVTLDD----AAQADDLFSVLMGEDVEARRQFIQRNAKDVRFLD 700


>gi|1107468|gb|AAA83016.1| gyrase B [Mycobacterium tuberculosis H37Rv]
          Length = 686

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 254/686 (37%), Positives = 368/686 (53%), Gaps = 47/686 (6%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A   + A D Y A+SI ILEGLE VR RPGMYIG T E+ LHHL  EV+DNA+DE +AGY
Sbjct: 13  AAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGY 72

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A  + V L  +G + V D+GRGIPV  H       T+++++T LHAGGKFD+  Y ISGG
Sbjct: 73  ATTVNVVLLEDGGVEVADDGRGIPVATH--ASGIPTVDVVMTQLHAGGKFDSDAYAISGG 130

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS  L V + R    +SQ + +  PL    K+     K G+ + F  DP
Sbjct: 131 LHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLGL--KQGAPTKKTGSTVRFWADP 188

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY------------------ 255
            +F     +D   + +  Q  A+L+  +    + ++   ++                   
Sbjct: 189 AVFET-TEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASER 247

Query: 256 -------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
                     +   F++PGGL  +++     ++ I S I     +  G     VE AI W
Sbjct: 248 AAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGH---EVEIAIEW 304

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
                  + ++ NTI T EGGTHE G R ALT  + KYA+  +    +  ++  DD+   
Sbjct: 305 NAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREG 364

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  ++   +  
Sbjct: 365 LAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSS 424

Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGGSAK  R+ 
Sbjct: 425 AQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDS 484

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY K+++M DA
Sbjct: 485 MFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRYHKIVLMADA 544

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603
           DVDG HI++LLLT  ++ M  LIE  H+FL  PPL+++        +A+ +  +  +LE 
Sbjct: 545 DVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEA 604

Query: 604 FKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
             K GK KI     I R+KGLGEM A +L ET MD + R L +V ++          +  
Sbjct: 605 GLKAGK-KINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELF 659

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
           + LMG   D R  FI   A  +  + 
Sbjct: 660 SILMGEDVDARRSFITRNAKDVRFLD 685


>gi|323127404|gb|ADX24701.1| DNA topoisomerase IV subunit B [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 649

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 240/653 (36%), Positives = 368/653 (56%), Gaps = 34/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I V +
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIRVVI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G ++V D+GRG+P   H       T+++I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSVSVADSGRGMPTGQH--AMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F  G  P++ L+K     ++K GT +TF PD KIF   
Sbjct: 127 VNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTI 186

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   VK   +  +        P  EEF++  G++ +++   E+
Sbjct: 187 -DFKFNTIAERLKESAFLLKNVKMSLTDLR-----GDEPIVEEFHYENGVQDFVEYLNED 240

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++  I+    +        VE A+ + +   +   S+ N + T +GG+HE+GL+ A+
Sbjct: 241 KETLTPVIYMEGQDHD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 296

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ + E   +F GQTK KL S  A+ 
Sbjct: 297 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 356

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451
            V++ + +    +L++N   A+ L+   I+    R   RK R+ +R     K       G
Sbjct: 357 IVDSIVSEKLTFFLLENGELASNLVRKAIKARNAREAARKARDDSRNGKKNKKDKGLLSG 416

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL       A   EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N+
Sbjct: 417 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 476

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  +V  +G    + +  ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 477 EINTMVHTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     K  YA  +   + + +EF K       + R+KGLGEM A+Q
Sbjct: 537 VYIALPPLYKMSKGKGKTEKVSYAWTDGELEDLRKEFGKGAI----LQRYKGLGEMNANQ 592

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET MD   RTL+RV I+     L   +  ++ LMG KA  R ++I++   F
Sbjct: 593 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 641


>gi|251782581|ref|YP_002996884.1| DNA topoisomerase IV subunit B [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391211|dbj|BAH81670.1| DNA topoisomerase IV subunit B [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 650

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 241/653 (36%), Positives = 369/653 (56%), Gaps = 34/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I V +
Sbjct: 10  NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIRVVI 69

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G ++V D+GRG+P   H       T+++I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 70  NKDGSVSVADSGRGMPTGQH--AMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 127

Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F  G  P++ L+K     ++K GT +TF PD KIF   
Sbjct: 128 VNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTI 187

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   VK   +  +        P  EEF++  G++ +++   E+
Sbjct: 188 -DFKFNTIAERLKESAFLLKNVKMSLTDLR-----GDEPIVEEFHYENGVQDFVEYLNED 241

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++  I+    +        VE A+ + +   +   S+ N + T +GG+HE+GL+ A+
Sbjct: 242 KETLTPVIYMEGQDHD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ + E   +F GQTK KL S  A+ 
Sbjct: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 357

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451
            V++ + +    +L++N   A+ L+   I+  + R   RK R+ +R     K       G
Sbjct: 358 IVDSIVSEKLTFFLLENGELASNLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 417

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL       A   EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N+
Sbjct: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  +V  +G    S +  ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 478 EINTMVYTIGAGVGSDFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 537

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     K  YA  +   + + +EF K       + R+KGLGEM A+Q
Sbjct: 538 VYIALPPLYKMSKGKGKTEKVSYAWTDGELEDLRKEFGKGAI----LQRYKGLGEMNANQ 593

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET MD   RTL+RV I+     L   +  ++ LMG KA  R ++I++   F
Sbjct: 594 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 642


>gi|71910524|ref|YP_282074.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS5005]
 gi|71853306|gb|AAZ51329.1| topoisomerase IV subunit B [Streptococcus pyogenes MGAS5005]
          Length = 649

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 243/653 (37%), Positives = 373/653 (57%), Gaps = 34/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V +
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G ++V D+GRG+P   H       T+++I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSVSVADSGRGMPTGQH--AMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R  +++ Q+F   G P++ L+K     ++K GT +TF PD KIF   
Sbjct: 127 VNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   VK   +  +        P  EEF++  G++ +++   E+
Sbjct: 186 IDFKFNTISERLKESAFLLKNVKMSLTDLRGDD-----PIIEEFHYENGVQDFVEYLNED 240

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++  I+    ++       VE A+ + +   +   S+ N + T +GG+HE+GL+ A+
Sbjct: 241 KETLTPVIYMEGQDQD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 296

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ + E   +F GQTK KL S  A+ 
Sbjct: 297 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 356

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            VE+ + +    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 357 IVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 416

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL       A   EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N+
Sbjct: 417 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 476

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  +V  +G    + +  ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 477 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     K  YA  +   + +  EF K       + R+KGLGEM A+Q
Sbjct: 537 VYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI----LQRYKGLGEMNANQ 592

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET MD   RTL+RV I+     L   +  ++ LMG KA  R ++I++   F
Sbjct: 593 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 641


>gi|315646515|ref|ZP_07899633.1| DNA topoisomerase IV, B subunit [Paenibacillus vortex V453]
 gi|315278158|gb|EFU41478.1| DNA topoisomerase IV, B subunit [Paenibacillus vortex V453]
          Length = 659

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 249/671 (37%), Positives = 353/671 (52%), Gaps = 42/671 (6%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
              +    ++   YDA  I++LEGL  VR RPGMYIG T    LHHL  E++DNA+DE +
Sbjct: 9   AESSKNGGNSRSGYDADDIQVLEGLVAVRKRPGMYIGSTSSSGLHHLVWEIVDNAVDEHL 68

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           A Y + IE++L  +G  TV DNGRGIP   H       T +++ T LHAGGKF  S Y+ 
Sbjct: 69  AKYCSRIEITLHKDGSATVYDNGRGIPTGMHK--TGIPTPQVVFTILHAGGKFGGSGYKK 126

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR----------GIPLSPLEKKEKVR 200
           SGGLHGVG SV NALS+ L V + R+  +  Q+F            G P++ LE      
Sbjct: 127 SGGLHGVGASVTNALSEWLEVEIYREGKVHRQRFEYWQDAKGKEHVGEPVTGLEVHGNTN 186

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
              GT+ITF+PD ++F      +   L +  Q  A+L+  ++     ++           
Sbjct: 187 K-TGTKITFKPDARVFTTGTHLNYDTLAERLQEIAFLNSGLRIVLKDERS-------GNG 238

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYC 319
           EEF++ GG   ++Q   E + ++   I     EK       VE A+ +     E   S+ 
Sbjct: 239 EEFFYEGGASQFVQFLNEGKDVLHDVIHFY-AEKDDI---EVEIALQYNAGYTETLASFV 294

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N+I T  GGTHE+G + A TR +  YA       ++  ++  +DL    + ++SV + E 
Sbjct: 295 NSIPTRGGGTHETGFKTAYTRVMNDYARKNNLLKEKDKNLEGNDLREGMMTVISVKMAEV 354

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           EF GQTK +L S  A+ TV++ + +    +L +NP  A  LL+  I+ S+ R   RK R+
Sbjct: 355 EFVGQTKDQLGSASARSTVDSIVTEKMQIFLEENPQVAQTLLKKAIQASKAREAARKARD 414

Query: 438 VNRKTAI--RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
             R          L GKL          TELFIVEGDSAGGSAKQ R+   QA+LPL+GK
Sbjct: 415 EMRSGKKRSESSNLGGKLTPAQSKDFSRTELFIVEGDSAGGSAKQGRDSKIQAILPLKGK 474

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLL 555
            +N   +    I  N +   +V A+G    +++   D  Y K+IIMTDAD DGAHI  LL
Sbjct: 475 PMNPEKSKLADILKNDEYRAIVSAIGAGIGTEFTAGDSNYSKIIIMTDADTDGAHIQVLL 534

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRI--TQGT--KSVYAHDEEHKQKILEEFKKHGKGK 611
           LTFFY+ M  LI++  ++L  PPL++I    G      YA  E      L+EFK      
Sbjct: 535 LTFFYRYMKPLIDEGRVYLAQPPLYKIASKSGKLETIRYAWTEGQLANYLKEFKN----- 589

Query: 612 IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERF 671
            E+ R+KGLGEM   QL ET M+   RTLL+V+I+         +  ++ LMG K D R 
Sbjct: 590 YELQRYKGLGEMNPEQLWETTMNPESRTLLQVQIDD----AAKAERRVSTLMGDKVDPRK 645

Query: 672 KFIQERASFID 682
           ++I E  +F +
Sbjct: 646 RWIVENVNFAE 656


>gi|183980040|ref|YP_001848331.1| DNA gyrase (subunit B) GyrB [Mycobacterium marinum M]
 gi|183173366|gb|ACC38476.1| DNA gyrase (subunit B) GyrB [Mycobacterium marinum M]
          Length = 692

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 257/703 (36%), Positives = 373/703 (53%), Gaps = 49/703 (6%)

Query: 19  SSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLF 78
           +  +     E   + A   + A D Y AS+I +LEGLE VR RPGMYIG T E+ LHHL 
Sbjct: 2   TGPRASNPEENIRTVAAQKKKAQDEYGASAITVLEGLEAVRKRPGMYIGSTGERGLHHLV 61

Query: 79  SEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLH 138
            EV+DN++DE +AGYA  + V L  +G + V DNGRGIPV  H       T+++++T LH
Sbjct: 62  WEVVDNSVDEAMAGYATQVNVRLLDDGSVEVADNGRGIPVAMH--ATGAPTVDVVMTQLH 119

Query: 139 AGGKF--DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK 196
           AGGKF  +NS Y +SGGLHGVG+SVVNALS  L V + R    +SQ + R  P +   K+
Sbjct: 120 AGGKFGGENSGYNVSGGLHGVGVSVVNALSTRLEVDIKRDGYEWSQFYDRAQPGTL--KQ 177

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY- 255
            +   K GT I F  DP IF     +D   + +  Q  A+L+  +    + ++   ++  
Sbjct: 178 GEATKKTGTTIRFWADPDIFET-TEYDFETVARRLQEMAFLNKGLTINLTDERVTPDEVV 236

Query: 256 ------------------------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGK 291
                                      +   F++PGGL  +++     +S I   I   +
Sbjct: 237 DDVVSDTAEAPKSAQEKAAESTAPHKVKSRTFHYPGGLVDFVKHINRTKSPIQQSIVDFE 296

Query: 292 TEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AEL 348
            +  G     VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   + 
Sbjct: 297 GKGSGH---EVEIAMQWNGGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKK 353

Query: 349 TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
               +  ++  DD+      ++SV + EP+F GQTKTKL + + +  V+    +   H+ 
Sbjct: 354 LLKDKDPNLTGDDIREGLAAVISVRVAEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWF 413

Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
             NP EA  ++   +  ++ RL  RK RE V RK+A     LPGKLADC       +EL+
Sbjct: 414 EANPSEAKTIVNKAVSSAQARLAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELY 473

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           +VEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     +
Sbjct: 474 VVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDE 533

Query: 528 YREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT- 586
           +    LRY K+++M DADVDG HI++LLLT  ++ M  LIE  H+FL  PPL+++     
Sbjct: 534 FDLSKLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRT 593

Query: 587 KSVYAHDEEHKQKILEEFKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLR 642
           +  +A+ +  +  +LE   K GK KI     I R+KGLGEM A +L ET MD + R L +
Sbjct: 594 EPEFAYSDRERDGLLEAGLKAGK-KINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQ 652

Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           V ++          +  + LMG   D R  FI   A  +  + 
Sbjct: 653 VTLDD----AAAADELFSILMGEDVDARRSFITRNAKDVRFLD 691


>gi|329117688|ref|ZP_08246405.1| DNA topoisomerase IV, B subunit [Streptococcus parauberis NCFD
           2020]
 gi|326908093|gb|EGE55007.1| DNA topoisomerase IV, B subunit [Streptococcus parauberis NCFD
           2020]
          Length = 651

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 240/653 (36%), Positives = 368/653 (56%), Gaps = 34/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ N I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLIWEIVDNAVDEALSGFGNAIKVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G ++V D+GRG+P   H       T+++I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSVSVEDSGRGMPTGKH--AMGIPTVQVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F   G P+S L+K     ++K GT +TF PD  IF   
Sbjct: 127 VNALSAWLQVDITRDGVVYRQRFENGGKPVSTLKKIGTAPKSKTGTTVTFMPDETIFSS- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   VK   +  +        P  EEF++  G++ +++   E+
Sbjct: 186 IDFKFNTIAERLKESAFLLKDVKMTLTDLR-----GDEPVVEEFHYENGVQDFVEYLNED 240

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++      + +        V+ A+ + +   +   S+ N + T +GG+HE+GL+ A+
Sbjct: 241 KETLTPV-IYIEGQD---QEFQVQVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKAAI 296

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ + E   +F GQTK KL S  A+ 
Sbjct: 297 TKVMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 356

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + D   ++L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 357 VVDGIVSDKLTYFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 416

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N+
Sbjct: 417 KLTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 476

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED+ Y+KVIIMTDAD DGAHI +LLLTFFY+ M  L+E+ H
Sbjct: 477 EINTMIHTIGAGVGADFSIEDINYDKVIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGH 536

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PP +++++G     K  YA  +     + +EF K       + R+KGLGEM A Q
Sbjct: 537 VYIALPPFYKMSKGKGKSEKIAYAWTDGELDDLRKEFGKGAM----LQRYKGLGEMNADQ 592

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET MD   RTL+RV I+     L   +  ++ LMG KA  R ++I++   F
Sbjct: 593 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 641


>gi|307709096|ref|ZP_07645555.1| DNA gyrase, B subunit [Streptococcus mitis SK564]
 gi|307620042|gb|EFN99159.1| DNA gyrase, B subunit [Streptococcus mitis SK564]
          Length = 648

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 253/648 (39%), Positives = 374/648 (57%), Gaps = 22/648 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + NYDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I+V 
Sbjct: 10  AQNYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVF 69

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGVG S
Sbjct: 70  IEPDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 128

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L V V +   I  Q++ RG  ++ LE      +K GT + F PDP+IF +  
Sbjct: 129 VVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DKTGTTVHFTPDPEIFTETT 187

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD  +L K  Q  A+L+  ++   +  +E  E     + + +++ GG+ +Y++   EN+
Sbjct: 188 TFDFDKLNKRIQELAFLNRGLQISITDKREGLE-----QTKHYHYEGGIASYVEYINENK 242

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
            +I         E       TVE A+ +     E   S+ N I T EGGTHE G R ALT
Sbjct: 243 DVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALT 299

Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA   +  +    ++  +D+      ++SV    P+F GQTKTKL + +  +   
Sbjct: 300 RVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 359

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
               D F  +L++NP  A +++E  ++        +R +    +K+ +    LPGKLADC
Sbjct: 360 RLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADC 419

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I  L
Sbjct: 420 SSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 479

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    +++     RY+K+++MTDADVDGAHI +LLLT  Y+ M  ++E  ++++  
Sbjct: 480 FTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQ 539

Query: 577 PPLFRITQGTKSV-YAHDEEHKQKILEEF---KKHGKGKIEISRFKGLGEMLASQLKETA 632
           PP++ +  G++   Y      ++  L+E       G+ K  I R+KGLGEM   QL ET 
Sbjct: 540 PPIYGVKVGSEIKEYIQPGADQEIKLQEALARHSEGRAKPTIQRYKGLGEMDDHQLWETT 599

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           MD   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 600 MDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643


>gi|227432902|ref|ZP_03914846.1| DNA gyrase subunit B [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227351335|gb|EEJ41617.1| DNA gyrase subunit B [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 672

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 256/659 (38%), Positives = 380/659 (57%), Gaps = 22/659 (3%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A    + + +Y+A  I++LEGLE VR RPGMYIG T  + LHHL  E++DN +DE +AG+
Sbjct: 28  ASTVDAKAGDYNADQIQVLEGLEAVRKRPGMYIGTTTAQGLHHLVWEIVDNGIDEALAGF 87

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ I V+++ +  +TV D+GRGIPV+   K   K  LE + T LHAGGKF    Y++SGG
Sbjct: 88  ASHITVTIEKDNSITVTDDGRGIPVDIQTK-TGKPALETVFTVLHAGGKFGGGGYKVSGG 146

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPD 212
           LHGVG SVVNALS +L V V R N ++   F  G +  +     E+   +RGT + F+PD
Sbjct: 147 LHGVGASVVNALSTDLDVKVVRDNKVYYMDFKVGRVHTTMRTLDEEPTIERGTIVHFKPD 206

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
             IF +   ++   LL   +  A+L+  ++   +  +        P KE F F GG+K Y
Sbjct: 207 TDIFRETTTYNYKTLLTRVRELAFLNKGLRISIADKR-----LEEPIKESFNFEGGIKEY 261

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHE 331
           +Q   E++ +I  E    + E+ G     VE A+ +  +    + ++ N I T EGGTHE
Sbjct: 262 VQYLNEDKQVIFPEPVYVEGEENGI---VVEAALQYTTDIKDSLRTFANNINTYEGGTHE 318

Query: 332 SGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G + ALTR I  YA  +   +    S+  +D+      I+S+   +P+F GQTKTKL +
Sbjct: 319 TGFKTALTRVINDYARKSGQIKDGAESLTGEDVREGMTAIVSIKHPDPQFEGQTKTKLGN 378

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLR 448
            DA++  +    + F  ++++NP  A +++E  +   + RL  ++ RE+  +++ +    
Sbjct: 379 SDARQATDRMFSETFSRFMMENPNVARQIVEKGVLAQKARLAAKRAREMTRKQSGLEIGN 438

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLAD + N    +ELFIVEGDSAGGSAKQ RNR  QA+LP+RGKILNV  A  E++ 
Sbjct: 439 LPGKLADNTSNDPAISELFIVEGDSAGGSAKQGRNRVTQAILPIRGKILNVGKASLERVL 498

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            N++I  L  A+G      +  E   Y KVIIMTDADVDGAHI +LLLT FY+ M  L++
Sbjct: 499 ANEEIRSLFTAMGTGFGDDFNVEKANYHKVIIMTDADVDGAHIRTLLLTLFYRYMRPLVD 558

Query: 569 QKHLFLISPPLFRIT--QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
             ++++  PPL+ +         Y   +E  +  L +   + K K  + R+KGLGEM   
Sbjct: 559 AGYIYIAQPPLYGVALGNNKSMTYLDSDEELESYLSQLPSNVKPK--VQRYKGLGEMDYD 616

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           QL +T MDA  R LLRV    D    ++ +  I+ LMG     R KFI++ A F++++ 
Sbjct: 617 QLADTTMDAQNRRLLRV----DPADAEEAEAVIDMLMGGDVPPRRKFIEDNAVFVENLD 671


>gi|261406137|ref|YP_003242378.1| DNA topoisomerase IV subunit B [Paenibacillus sp. Y412MC10]
 gi|329924920|ref|ZP_08279867.1| DNA topoisomerase IV, B subunit [Paenibacillus sp. HGF5]
 gi|261282600|gb|ACX64571.1| DNA topoisomerase IV, B subunit [Paenibacillus sp. Y412MC10]
 gi|328940304|gb|EGG36633.1| DNA topoisomerase IV, B subunit [Paenibacillus sp. HGF5]
          Length = 659

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 249/671 (37%), Positives = 351/671 (52%), Gaps = 42/671 (6%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
              +    +    YDA  I++LEGL  VR RPGMYIG T    LHHL  E++DNA+DE +
Sbjct: 9   AESSKNGGTNRSGYDADDIQVLEGLVAVRKRPGMYIGSTSSSGLHHLVWEIVDNAVDEHL 68

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           A Y + IE++L  +G  TV DNGRGIP   H       T +++ T LHAGGKF  S Y+ 
Sbjct: 69  AKYCSRIEITLHKDGSATVYDNGRGIPTGMHK--TGIPTPQVVFTILHAGGKFGGSGYKK 126

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR----------GIPLSPLEKKEKVR 200
           SGGLHGVG SV NALS+ L V + R+  I  Q+F            G P++ LE      
Sbjct: 127 SGGLHGVGASVTNALSEWLEVEIYREGKIHRQRFEYWQDKKGKEHVGEPVTGLEVLGNTN 186

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
              GT+ITF+PD ++F      +   L +  Q  A+L+  ++     ++           
Sbjct: 187 K-TGTKITFKPDARVFTSGTHLNYDTLAERLQEIAFLNSGLRIVLKDERS-------GNG 238

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYC 319
           EEF++ GG   ++Q   E + ++   I     EK       VE A+ +     E   S+ 
Sbjct: 239 EEFFYEGGASQFVQFLNEGKDVLHDVIHFY-AEKDDI---EVEIALQYNAGYTETLASFV 294

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N+I T  GGTHE+G + A TR +  YA       ++  ++  +DL    + ++SV + E 
Sbjct: 295 NSIPTRGGGTHETGFKTAYTRVMNDYARKNNLLKEKDKNLEGNDLREGMMTVISVKMAEV 354

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           EF GQTK +L S  A+  V++ + +    +L +NP  A  LL+  I+ S+ R   RK R+
Sbjct: 355 EFVGQTKDQLGSASARSAVDSIVTEKMQIFLEENPQVAQTLLKKAIQASKAREAARKARD 414

Query: 438 VNRKTAI--RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
             R          L GKL          TELFIVEGDSAGGSAKQ R+   QA+LPL+GK
Sbjct: 415 EMRSGKKRSESSNLGGKLTPAQSKDFSRTELFIVEGDSAGGSAKQGRDSKIQAILPLKGK 474

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLL 555
            +N   +    I  N +   +V A+G    +++   D  Y K+IIMTDAD DGAHI  LL
Sbjct: 475 PMNPEKSKLADILKNDEYRAIVSAIGAGIGTEFTAGDSNYSKIIIMTDADTDGAHIQVLL 534

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRI--TQGT--KSVYAHDEEHKQKILEEFKKHGKGK 611
           LTFFY+ M  LI++  ++L  PPL++I    G      YA  +E     L+EFK      
Sbjct: 535 LTFFYRYMKPLIDEGRVYLAQPPLYKIASKSGKLETVRYAWTDEQLANYLKEFKN----- 589

Query: 612 IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERF 671
            E+ R+KGLGEM   QL ET M+   RTLL+V+I          +  ++ LMG K D R 
Sbjct: 590 FELQRYKGLGEMNPEQLWETTMNPETRTLLQVQIED----AAKAERRVSTLMGDKVDPRK 645

Query: 672 KFIQERASFID 682
           ++I E  +F +
Sbjct: 646 RWIVENVNFAE 656


>gi|148377999|ref|YP_001256875.1| DNA gyrase subunit B [Mycoplasma agalactiae PG2]
 gi|148292045|emb|CAL59437.1| DNA gyrase subunit B [Mycoplasma agalactiae PG2]
          Length = 655

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 257/665 (38%), Positives = 362/665 (54%), Gaps = 25/665 (3%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
           ++    NQS +++Y+ASSIR+LEGLE VR+RPGMYIG   +K LHHL  E++DN++DE +
Sbjct: 5   ENTNQDNQSKNNSYNASSIRVLEGLEAVRVRPGMYIGTITDKGLHHLVWEIVDNSVDECM 64

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AGYAN I++++  +G++ + DNGRGIPV  HP+    ST+E +LT LHAGGKFD+  Y++
Sbjct: 65  AGYANFIKITICKDGYIEIEDNGRGIPVAKHPQ-TGLSTVETVLTVLHAGGKFDSDAYKV 123

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK--RGTRIT 208
           SGGLHGVG SVVNALS   HV V R+   +   F  G             +    GT+I 
Sbjct: 124 SGGLHGVGASVVNALSSNFHVWVKREGHTYYAHFQHGGQTVQPLTVINNIDPSETGTKIK 183

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F PD  I      F    +    +  AYL+   +     +            EEFY+ GG
Sbjct: 184 FHPDFTILEKHP-FSVEAITDHAKRIAYLTKGTRLVVVDEINNT-------SEEFYYEGG 235

Query: 269 LKTYLQTKLENRSLISSEIFTGKT---EKKGTHRGTVEWAIAWCEENPEI-TSYCNTILT 324
           L  Y+    E + L+   I   +      K   + TVE A+ +        T+Y N I+T
Sbjct: 236 LIDYVNELNEGQKLVHDSIIYAEGLYDSDKSGSKITVEVALQYTSTFQPRITTYTNNIVT 295

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQ 382
            EGGTHE G   AL+R I  YA      +  +     +D     V I+SV   +P F GQ
Sbjct: 296 IEGGTHEQGFFDALSRLINSYALKNGLIKNENERLNKEDTSKGLVAIVSVKHPDPIFEGQ 355

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK KL + DA+  V   L    + Y  +NPI+A +++   ++  + RL      E  +  
Sbjct: 356 TKGKLNNKDARTAVREILAPVLERYFDENPIDAREIINKCLQSRKSRLAAEAAAEAVQAN 415

Query: 443 AIRKLRL--PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
                    PGKLA+C+   A   EL+IVEG+SAGGSAK  R+R+ QA+LPLRGK++N  
Sbjct: 416 MGNNSIASLPGKLANCTSKNAEICELYIVEGNSAGGSAKMGRDRNVQAILPLRGKVINAE 475

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
               E++ +N +I+ L+ ALG      +    LRY KVIIMTDADVDGAHI +LLLTFFY
Sbjct: 476 KVSPERVLSNAEIISLITALGTGLNESFDINKLRYHKVIIMTDADVDGAHIRTLLLTFFY 535

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           +    LIE   +++  PPL++I Q     YA+++  K  IL+    +   KI I R+KGL
Sbjct: 536 RYFRKLIEYGFIYIAQPPLYKIQQNKYIAYAYNDSQKDSILQSL--NQDSKITIQRYKGL 593

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GEM   QL ET M+   R + +V+I+               LMG     R +FI++ A F
Sbjct: 594 GEMDPEQLWETTMNPENRKMYQVQIDD----AAKADWVFTTLMGDDVLPRREFIEKNAKF 649

Query: 681 IDDVG 685
           + ++ 
Sbjct: 650 VQNID 654


>gi|313890229|ref|ZP_07823864.1| DNA topoisomerase IV, B subunit [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313121590|gb|EFR44694.1| DNA topoisomerase IV, B subunit [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 649

 Score =  587 bits (1512), Expect = e-165,   Method: Composition-based stats.
 Identities = 244/652 (37%), Positives = 372/652 (57%), Gaps = 34/652 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ N I+V+++
Sbjct: 10  NYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGNEIKVTIN 69

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G ++V D+GRG+P   H       T+++I T LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 70  ADGSVSVADSGRGMPTGKH--AMGIPTVQVIFTVLHAGGKFGQGGYKTSGGLHGVGSSVV 127

Query: 163 NALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKK-EKVRNKRGTRITFRPDPKIFGDKA 220
           NALS  L V + R  +++ Q+F   G P+S L+K     ++K GT++TF PD  IF    
Sbjct: 128 NALSKWLEVEITRDGSVYKQRFENGGKPVSTLKKIASAPKSKTGTKVTFMPDDSIFST-T 186

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    + +  +  A+L   VK   +  +           EEF++  G++ ++    E++
Sbjct: 187 DFKFNTIAERLKESAFLLKDVKMSLTDLR-----GEEAVTEEFHYENGVQDFVSYLNEDK 241

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             ++  I+    E+       V+ A+ + +   +   S+ N + T +GG+HE+GL+ A+T
Sbjct: 242 ETLTPVIYVEGEEQD----FQVQVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKTAIT 297

Query: 340 RGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395
           + +  YA  T     +  ++   D       +LS+ + E   +F GQTK KL S  A+  
Sbjct: 298 KVMNDYARKTSLLKDKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPV 357

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPGK 452
           VE  + +   ++L++N   AT L+   I+  + R   RK R+ +R   K    K  L GK
Sbjct: 358 VEGIVSEKLTYFLLENGELATNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 417

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L       A   EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N++
Sbjct: 418 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMTDILKNEE 477

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  +V  +G    + +R E++ Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E+ H+
Sbjct: 478 INTMVYTIGAGVGADFRIEEINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGHV 537

Query: 573 FLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           ++  PPL+++++G     K  YA  +   + +  EF K       + R+KGLGEM A QL
Sbjct: 538 YIALPPLYKMSKGKGKTAKVSYAWTDGELEDLRREFGKGAM----LQRYKGLGEMNADQL 593

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET MD   RTL+RV I+     L   +  ++ LMG KA  R ++I++  +F
Sbjct: 594 WETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVTF 641


>gi|197294338|ref|YP_001798879.1| DNA gyrase beta subunit [Candidatus Phytoplasma australiense]
 gi|171853665|emb|CAM11548.1| DNA gyrase beta subunit [Candidatus Phytoplasma australiense]
          Length = 662

 Score =  587 bits (1512), Expect = e-165,   Method: Composition-based stats.
 Identities = 264/672 (39%), Positives = 377/672 (56%), Gaps = 40/672 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY+A SI+ILEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AG+AN I + +
Sbjct: 2   KNYNADSIQILEGLEAVRKRPGMYIGSTAAKGLHHLVWEIVDNSIDEALAGHANEITLEI 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
                ++V DNGRGIPV  H K   K  +E ILTTLHAGGKFD+S+Y+ISGGLHGVG SV
Sbjct: 62  LPGDIISVTDNGRGIPVGIHHK-TGKPAVETILTTLHAGGKFDSSSYKISGGLHGVGASV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS    V +     I  QK+ +G+P++PLE   K  +++GT I F  DP IF +   
Sbjct: 121 VNALSSWFSVEIHLDKKIHYQKYEKGVPVAPLEVIGKT-DRKGTVIKFLADPSIFQETTI 179

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +DA  L +  Q  ++L+  +K      +        P    FY   GL+ YL    +   
Sbjct: 180 YDAKILKERIQQLSFLNKGLKLNLIDQR-----QEKPVSFNFYHEKGLQDYLTFINQTYM 234

Query: 282 LIS-----------------SEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILT 324
                                       + + + +   E AI    +  +I S+ N I T
Sbjct: 235 QKPFHNLFVLEKELDNLALEIVFEYTVNDDEKSKQQEEEQAIKNYTQTQKIYSFVNNIHT 294

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
            EGGTHE G ++AL+R   KYA+     K+  S++S+D++     I+S+  ++P+F GQT
Sbjct: 295 HEGGTHEEGFKLALSRNFSKYAKDYNLLKKNESLLSEDILEGITAIISLKHQDPQFEGQT 354

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443
           K KL +++ ++ V     +    +L++NP +A K++E  +  +  RL  ++ RE+ R   
Sbjct: 355 KAKLGNVEVRQIVSQYFGEALGRFLLENPGDAKKIIEKCLLSANARLAAKRAREIVRNKP 414

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +  L    KLADC       +EL+IVEGDSAGGSAKQ R+   QA+LPL+GK+LNV    
Sbjct: 415 LDTLGFAAKLADCRSKDPKISELYIVEGDSAGGSAKQGRDSHFQAILPLKGKVLNVEKTQ 474

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREE----DLRYEKVIIMTDADVDGAHIASLLLTFF 559
           S KI  N++I  L+QA+G       ++      LRY K+IIMTDADVDGAHI +LLLTFF
Sbjct: 475 SSKILTNKEIKSLIQAIGIGVDINKQKNLNLDKLRYHKIIIMTDADVDGAHIRTLLLTFF 534

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
           ++ +  LIE+ +++   PPL++  +G    Y +  E K+KI    KK+ K      R+KG
Sbjct: 535 FRNLRILIEKGYIYFARPPLYKYQKGKNITYFY--EEKEKIDFSLKKNIKDGF--QRYKG 590

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINK------DLNSLKDTQDSINKLMGTKADERFKF 673
           LGEM   QL ET M+  KRTLL+  +        D  ++K+   + N LMG +   R +F
Sbjct: 591 LGEMNPDQLWETTMNPEKRTLLQASLKDALNALSDEEAIKEANSTFNILMGKEVFPRKEF 650

Query: 674 IQERASFIDDVG 685
           I   A   D + 
Sbjct: 651 ILNNALEAD-LD 661


>gi|251782113|ref|YP_002996415.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242390742|dbj|BAH81201.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
          Length = 650

 Score =  587 bits (1512), Expect = e-165,   Method: Composition-based stats.
 Identities = 256/652 (39%), Positives = 374/652 (57%), Gaps = 24/652 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +  +  YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A  I
Sbjct: 9   EEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFATHI 68

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +  +TVVDNGRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGV
Sbjct: 69  QVFIEADNSITVVDNGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS +L V V +   I  Q+F RG  ++ LE          T + F PD +IF 
Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVIGTTDVTG-TTVHFTPDSEIFT 186

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   FD   L K  Q  A+L+  +K   +  +   E     ++E F++ GG+ +Y++   
Sbjct: 187 ETTEFDYKVLAKRIQELAFLNRGLKISITDKRSGME-----QEEHFHYEGGIGSYVEFLN 241

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           + + +I         E +G     VE A+ +       + S+ N I T EGGTHE G R 
Sbjct: 242 DKKDVIFETPIYTDGELEGI---AVEVAMQYTTSYHEVVMSFANNIHTHEGGTHEQGFRT 298

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA+  +   +   ++  +D+      ++SV    P+F GQTKTKL + +  +
Sbjct: 299 ALTRVINDYAKKNKILKENDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
                  + F  +L++NP  A K++E  I  S+ R+  ++ RE   +K+ +    LPGKL
Sbjct: 359 ITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS N A   ELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I
Sbjct: 419 ADCSSNDASQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 478

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             L  A+G    + +     RY+K++IMTDADVDGAHI +LLLT  Y+ M  ++E  +++
Sbjct: 479 RSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVY 538

Query: 574 LISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           +  PP++ +  G++   Y       EE  +  LE++   G+ K  + R+KGLGEM   QL
Sbjct: 539 IAQPPIYGVKVGSEIKEYIQPGIEQEEQLKTALEKYS-VGRSKPTVQRYKGLGEMDDHQL 597

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET MD   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 598 WETTMDPENRLMARVTVDD----AAEADKVFDMLMGDRVEPRREFIEENAVY 645


>gi|85374021|ref|YP_458083.1| DNA topoisomerase IV subunit B [Erythrobacter litoralis HTCC2594]
 gi|84787104|gb|ABC63286.1| topoisomeraseB subunit [Erythrobacter litoralis HTCC2594]
          Length = 658

 Score =  587 bits (1512), Expect = e-165,   Method: Composition-based stats.
 Identities = 345/650 (53%), Positives = 456/650 (70%), Gaps = 8/650 (1%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
              ++S +YD+SSI +LEGLEPVR RPGMYIGGTD++ALHHL +EV+DNAMDE +AG+A+
Sbjct: 8   NTPASSGDYDSSSIEVLEGLEPVRRRPGMYIGGTDDRALHHLVAEVLDNAMDEAVAGHAS 67

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I ++L+    ++V DNGRGIPV+ HPKFP KSTLE+IL+TLH+GGKF    Y  SGGLH
Sbjct: 68  RIAITLEEGNTVSVADNGRGIPVDEHPKFPGKSTLEVILSTLHSGGKFSGKAYATSGGLH 127

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS    V VAR   +++Q+FS+G  L  +EK     N+RGT +TF PD +I
Sbjct: 128 GVGVSVVNALSSYTRVEVARDRELYAQEFSKGQALGKIEKLGPTPNRRGTTVTFTPDTEI 187

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           FGD   F  ARL K+ +SKAYL   V+  W C   +A    +PE+  F FPGGL  +L+ 
Sbjct: 188 FGD-RQFKPARLFKLARSKAYLFAGVEIRWKCAPSLASDD-VPEEAVFKFPGGLADHLKE 245

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGL 334
           ++  R  ++++ FTG  +    H G VEWAIAW    +   + YCNT+ T +GGTHE GL
Sbjct: 246 QVGERECVTADPFTGSQDFPDNH-GRVEWAIAWPLYSDGSTSWYCNTVPTPDGGTHEQGL 304

Query: 335 RVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           R ALT+G++ + ELT  K+A  I +DD+M  A  +LSVFIR+P+F  QTK +L S +A R
Sbjct: 305 RAALTKGLRVFGELTGTKKAKDISADDVMTGAEIMLSVFIRDPQFQSQTKDRLTSPEASR 364

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLPGK 452
            VENA+RD FDH+L  N      LL  V+ER EERLRR+++RE+ RKTA   +KLRLPGK
Sbjct: 365 LVENAVRDHFDHFLSDNMERGKALLGSVMERMEERLRRKQEREIKRKTATNAKKLRLPGK 424

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L DCS      TELFIVEGDSAGGSAKQAR+R  QA+LP+RGKILNVASA ++KIR NQ+
Sbjct: 425 LTDCSGETDAETELFIVEGDSAGGSAKQARDRKTQAILPIRGKILNVASATADKIRANQE 484

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I DL  A+GC TR     E+LRY+++IIMTDADVDGAHIA+LL+TFF+QEM +++   HL
Sbjct: 485 IADLSLAMGCGTRKDCDPENLRYDRIIIMTDADVDGAHIATLLMTFFFQEMSEVVRNGHL 544

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           +L  PPL+R+T G +S YA DE H+Q++     K    K++++RFKGLGEM   QL+ET 
Sbjct: 545 YLAQPPLYRLTAGKESRYAQDEAHRQELEGTVFK--GKKVDVARFKGLGEMNPQQLRETT 602

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           M+   R+L+R+ +  +       ++ +++LMG   + RF FIQ RA  ID
Sbjct: 603 MNPETRSLIRITLPAEHEQRFAVKELVDRLMGRNPEHRFNFIQNRAGEID 652


>gi|307708511|ref|ZP_07644976.1| DNA gyrase, B subunit [Streptococcus mitis NCTC 12261]
 gi|307615427|gb|EFN94635.1| DNA gyrase, B subunit [Streptococcus mitis NCTC 12261]
          Length = 648

 Score =  587 bits (1512), Expect = e-165,   Method: Composition-based stats.
 Identities = 252/648 (38%), Positives = 374/648 (57%), Gaps = 22/648 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I+V 
Sbjct: 10  AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVF 69

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGVG S
Sbjct: 70  IEPDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 128

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L V V +   I  Q++ RG  ++ LE      +K GT + F PDP+IF +  
Sbjct: 129 VVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DKTGTTVHFIPDPEIFTETT 187

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD  +L K  Q  A+L+  ++   +  +E  E     + + +++ GG+ +Y++   EN+
Sbjct: 188 TFDFDKLNKRIQELAFLNRGLQISITDKREGLE-----QTKHYHYEGGIASYVEYINENK 242

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
            +I         E       TVE A+ +     E   S+ N I T EGGTHE G R ALT
Sbjct: 243 DVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALT 299

Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA   +  +    ++  +D+      ++SV    P+F GQTKTKL + +  +   
Sbjct: 300 RVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 359

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
               D F  +L++NP  A +++E  ++        +R +    +K+ +    LPGKLADC
Sbjct: 360 RLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADC 419

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I  L
Sbjct: 420 SSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 479

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    +++     RY+K+++MTDADVDGAHI +LLLT  Y+ M  ++E  ++++  
Sbjct: 480 FTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQ 539

Query: 577 PPLFRITQGTKSV-YAHDEEHKQKILEEF---KKHGKGKIEISRFKGLGEMLASQLKETA 632
           PP++ +  G++   Y      ++  L+E       G+ K  I R+KGLGEM   QL ET 
Sbjct: 540 PPIYGVKVGSEIKEYIQPGADQEIKLQEALARHSEGRAKPTIQRYKGLGEMDDHQLWETT 599

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           MD   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 600 MDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643


>gi|306829208|ref|ZP_07462398.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus mitis
           ATCC 6249]
 gi|304428294|gb|EFM31384.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus mitis
           ATCC 6249]
          Length = 648

 Score =  587 bits (1512), Expect = e-165,   Method: Composition-based stats.
 Identities = 251/652 (38%), Positives = 374/652 (57%), Gaps = 22/652 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
               + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ 
Sbjct: 6   KNQQAQDYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASH 65

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+V ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHG
Sbjct: 66  IQVFIEPDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHG 124

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS +L V V +   I  Q++  G  ++ LE      +K GT + F PDP+IF
Sbjct: 125 VGSSVVNALSTQLDVHVHKNGKIHYQEYRCGHVVADLEVVGDT-DKTGTTVHFTPDPEIF 183

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   FD  +L K  Q  A+L+  ++   +  +E  E     + + +++ GG+ +Y++  
Sbjct: 184 TETTTFDFEKLNKRVQELAFLNRGLRISITDKREGLE-----QTKHYHYEGGIASYVEYI 238

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335
            EN+ +I  +      E       TVE A+ +     E   S+ N I T EGGTHE G R
Sbjct: 239 NENKDVIFDKPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFR 295

Query: 336 VALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR I  YA   +  +    ++  +D+      ++SV    P+F GQTKTKL + +  
Sbjct: 296 TALTRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVV 355

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
           +       D F  +L++NP  A +++E  ++        +R +    +K+ +    LPGK
Sbjct: 356 KITNRLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGK 415

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++
Sbjct: 416 LADCSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEE 475

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  L  A+G    +++     RY+K+++MTDADVDGAHI +LLLT  Y+ M  ++E  ++
Sbjct: 476 IRSLFTAMGTGFGAEFDVTKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYV 535

Query: 573 FLISPPLFRITQGTKSV-YAHDEEHKQKILEEF---KKHGKGKIEISRFKGLGEMLASQL 628
           ++  PP++ +  G++   Y      ++  L+E       G+ K  I R+KGLGEM   QL
Sbjct: 536 YIAQPPIYGVKVGSEIKEYIQPGADQEIKLQEALARHSEGRSKPTIQRYKGLGEMDDHQL 595

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET MD   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 596 WETTMDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643


>gi|255972743|ref|ZP_05423329.1| gram positive topoisomerase IV [Enterococcus faecalis T1]
 gi|256762550|ref|ZP_05503130.1| gram positive topoisomerase IV [Enterococcus faecalis T3]
 gi|255963761|gb|EET96237.1| gram positive topoisomerase IV [Enterococcus faecalis T1]
 gi|256683801|gb|EEU23496.1| gram positive topoisomerase IV [Enterococcus faecalis T3]
          Length = 666

 Score =  587 bits (1512), Expect = e-165,   Method: Composition-based stats.
 Identities = 235/639 (36%), Positives = 348/639 (54%), Gaps = 33/639 (5%)

Query: 55  LEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGR 114
           +E VR RPGMYIG TD + LHHL  E++DNA+DE ++GY N I V++  +  + V D+GR
Sbjct: 1   MEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGNEINVTIQKDNSICVADSGR 60

Query: 115 GIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA 174
           G+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SVVNALS  L V + 
Sbjct: 61  GMPTGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSKWLEVHIV 118

Query: 175 RQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
           R    + ++F  G  P+  L+K  K + + GT +TF PD  IF     F    L +  + 
Sbjct: 119 RDGVEYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDDTIFSTTN-FSYEILAERLRE 177

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            A+L   VK   + ++        P++E F++  G+K ++    E +  ++  +      
Sbjct: 178 SAFLLKGVKITLTDER-----GEEPKEEVFHYEEGIKEFVAYLNEEKDTLTPVV-YFSGA 231

Query: 294 KKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350
           K+G     VE A  + +   E   S+ N + T +GGTHE G++ ++T+   +YA      
Sbjct: 232 KEGI---EVELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKAYNEYARKVGLL 288

Query: 351 NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
            ++  ++   D       +LS+ + E   +F GQTK KL +  A+  V+N + +    YL
Sbjct: 289 KEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLARTVVDNVVGEQMGFYL 348

Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLADCSQNIAHGTE 465
            +N   +  L+   I+  E R   RK RE +R    RK     L GKL           E
Sbjct: 349 QENSEMSQSLIRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNE 408

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
           L++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I  N++I  ++  +G    
Sbjct: 409 LYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVG 468

Query: 526 SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG 585
            ++  ED  Y+K+IIMTDAD DGAHI  LLLTFFY+ M  LIE   +++  PPL+++++G
Sbjct: 469 PEFSIEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKG 528

Query: 586 --TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
              KSV  YA  +    +++++  K       + R+KGLGEM A QL ET MD   RTL+
Sbjct: 529 TGKKSVIEYAWTDGELAEVIDKVGK----GYMLQRYKGLGEMNAEQLWETTMDPETRTLI 584

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           RV I+         +  +  LMG K + R K+I++   F
Sbjct: 585 RVRIDD----AAQAERRVTTLMGDKVEPRRKWIEQHVQF 619


>gi|313122780|ref|YP_004033039.1| DNA gyrase subunit b [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
 gi|312279343|gb|ADQ60062.1| DNA gyrase subunit B [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
          Length = 653

 Score =  587 bits (1512), Expect = e-165,   Method: Composition-based stats.
 Identities = 253/660 (38%), Positives = 373/660 (56%), Gaps = 20/660 (3%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
             A   +  +D Y+AS I++L GLE VR RPGMYIG T  + LHHL  E+IDN +DE +A
Sbjct: 9   KKAKQFEQEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNGIDEALA 68

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+A  IEV+++ +  +TV D+GRGIPV+   K   +  +E + T LHAGGKF    Y++S
Sbjct: 69  GFATKIEVTVNEDNSVTVQDDGRGIPVDI-EKKTGRPAVETVYTVLHAGGKFGGGGYKVS 127

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFR 210
           GGLHGVG SVVNALS +L+VTV R    +   F  G  +  L++   V   + GT + F 
Sbjct: 128 GGLHGVGASVVNALSTKLNVTVMRDGKKYHIAFDHGRVVEELKEVGTVPLTEHGTIVHFW 187

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PDP IF +   FD   L    +  A+L+  +K  ++  ++        E + ++F GG+K
Sbjct: 188 PDPNIFTETTVFDDKILKNRIRELAFLNKGLKLTFTDKRKD-----TAETDVYHFEGGIK 242

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            Y+      + ++  E    + + +G     VE ++ +       + ++ N I T EGG 
Sbjct: 243 EYVSFLNRGQEVLFDEPIYVEGKYEGI---DVEVSLQYTTGYKTTLMTFANNIHTYEGGM 299

Query: 330 HESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           HE+G + ALTR +  YA  T+  +    ++  +D+      ++SV    P+F GQTKTKL
Sbjct: 300 HEAGFKTALTRVVNDYAHKTKILKESDDNLSGEDIREGMTAVISVKHPNPQFEGQTKTKL 359

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRK 446
            + DA+  V+ A  + F  +L++NP  A K++E   +        +R +    +K+ +  
Sbjct: 360 GNSDARTAVDRAFSETFSTFLMENPQVARKIVEKGQLAERARVAAKRAREVTRKKSGLEI 419

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLAD + N  + +ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++
Sbjct: 420 ANLPGKLADNTSNDPNISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDR 479

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           I  NQ+I  L  ALG    + +     RY K+IIMTDADVDGAHI +LLLT FY+ M  +
Sbjct: 480 ILANQEIRTLFTALGTGFGADFDISKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPM 539

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           I++ ++++  PPL+++ QG    Y   +E     L   +     K  + R+KGLGEM A 
Sbjct: 540 IDKGYVYIARPPLYQVRQGKLIKYLDTDEELHDYLGSLQPS--PKPIVQRYKGLGEMDAE 597

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           QL ET MD   R L RV    D    KD  +    LMG +   R KFI++ A +++++  
Sbjct: 598 QLWETTMDPENRRLDRV----DPEYAKDADEVFEMLMGNEVGPRRKFIEDNAQYVENLDA 653


>gi|116513233|ref|YP_812139.1| DNA gyrase, B subunit [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
 gi|116092548|gb|ABJ57701.1| DNA gyrase subunit B [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
 gi|325124860|gb|ADY84190.1| DNA gyrase subunit B [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 653

 Score =  587 bits (1512), Expect = e-165,   Method: Composition-based stats.
 Identities = 253/660 (38%), Positives = 372/660 (56%), Gaps = 20/660 (3%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
             A   +  +D Y+AS I++L GLE VR RPGMYIG T  + LHHL  E+IDN +DE +A
Sbjct: 9   KKAKQFEQEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNGIDEALA 68

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+A  IEV+++ +  +TV D+GRGIPV+   K   +  +E + T LHAGGKF    Y++S
Sbjct: 69  GFATKIEVTVNEDNSVTVQDDGRGIPVDI-EKKTGRPAVETVYTVLHAGGKFGGGGYKVS 127

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFR 210
           GGLHGVG SVVNALS +L+VTV R    +   F  G  +  L++   V   + GT + F 
Sbjct: 128 GGLHGVGASVVNALSTKLNVTVMRDGKKYYIAFDHGRVVEELKEVGTVPLTEHGTIVHFW 187

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PDP IF +   FD   L    +  A+L+  +K  ++  ++        E + ++F GG+K
Sbjct: 188 PDPNIFTETTVFDDKILKNRIRELAFLNKGLKLTFTDKRKD-----TAETDVYHFEGGIK 242

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            Y+      + ++  E    + + +G     VE ++ +       + ++ N I T EGG 
Sbjct: 243 EYVSFLNRGQEVLFDEPIYVEGKYEGI---DVEVSLQYTTGYKTTLMTFANNIHTYEGGM 299

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           HE+G + ALTR I  YA   +   +   ++  +D+      ++SV    P+F GQTKTKL
Sbjct: 300 HEAGFKTALTRVINDYAHKAKILKENDDNLSGEDIREGMTAVISVKHPSPQFEGQTKTKL 359

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRK 446
            + DA+  V+ A  + F  +L++NP  A K++E   +        +R +    +K+ +  
Sbjct: 360 GNSDARTAVDRAFSETFSTFLMENPQVARKIVEKGQLAERARVAAKRAREVTRKKSGLEI 419

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLAD + N  + +ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++
Sbjct: 420 ANLPGKLADNTSNDPNISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDR 479

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           I  NQ+I  L  ALG    + +     RY K+IIMTDADVDGAHI +LLLT FY+ M  +
Sbjct: 480 ILANQEIRTLFTALGAGFGADFDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPM 539

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           I++ ++++  PPL+++ QG    Y   +E     L   +     K  + R+KGLGEM A 
Sbjct: 540 IDKGYVYIARPPLYQVRQGKLIKYLDTDEELHDYLGSLQPS--PKPIVQRYKGLGEMDAE 597

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           QL ET MD   R L RV    D    KD  +    LMG +   R KFI++ A +++++  
Sbjct: 598 QLWETTMDPENRRLDRV----DPEYAKDADEVFEMLMGNEVGPRRKFIEDNAQYVENLDA 653


>gi|39938984|ref|NP_950750.1| DNA gyrase beta subunit [Onion yellows phytoplasma OY-M]
 gi|39722093|dbj|BAD04583.1| DNA gyrase beta subunit [Onion yellows phytoplasma OY-M]
          Length = 671

 Score =  587 bits (1512), Expect = e-165,   Method: Composition-based stats.
 Identities = 267/681 (39%), Positives = 376/681 (55%), Gaps = 49/681 (7%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY+A SI+ILEGLE VR RPGMYIG T +K LHHL  E++DN++DE +AG+AN I + +
Sbjct: 2   KNYNADSIQILEGLEAVRKRPGMYIGSTAQKGLHHLVWEIVDNSIDEALAGHANKITLEI 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
                ++V DNGRGIPV+ HPK   K  +E ILTTLHAGGKFDNS+Y++SGGLHGVG SV
Sbjct: 62  LPGEIISVSDNGRGIPVDIHPK-TGKPAVETILTTLHAGGKFDNSSYKVSGGLHGVGASV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS    V +     I+ QK+ +GI +SPLE   K    RGT I F  DP+IF +   
Sbjct: 121 VNALSTWFTVEIHLNKQIYFQKYEKGIAVSPLEVIGKTNK-RGTTIQFLADPEIFQETTI 179

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN-R 280
           ++   L +  Q  ++L+  +K   +  +   E         F    GL+ YL     + +
Sbjct: 180 YNFDTLKERMQQLSFLNKGLKLNIADKRYEKETVFN-----FCHEKGLQDYLDFINTSHK 234

Query: 281 SLISSEIFTGKTE------------------------KKGTHRGTVEWAIAWCEENPEIT 316
                EIF  + E                                 + AI    +N +I 
Sbjct: 235 QTPFHEIFYLEKEFQKLAFEIVFEYTTKIRPPKKDAQGNEIEEKEGKDAIPNYTQNQKIF 294

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIR 375
           S+ N I T EGGTHE G ++AL R I KYA+     K+   ++S+D++     I+S+  +
Sbjct: 295 SFVNNIPTHEGGTHEEGFKLALNRVISKYAKEFNLLKKDEHLLSEDILEGITAIISLKHQ 354

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
            P+F GQTK KL + + ++       +  + YL++NP ++ K+++  +  +  RL  ++ 
Sbjct: 355 YPQFEGQTKAKLANTEVRQITSQLFGEFLEKYLLENPQDSRKIIDKCLLSANARLAAKRA 414

Query: 436 REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           REV R   +  L    KLADC     H +EL+IVEGDSAGGSAKQ R+   QA+LPLRGK
Sbjct: 415 REVVRNKPLDSLGFASKLADCRSKDPHISELYIVEGDSAGGSAKQGRDSRFQAILPLRGK 474

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTR----SQYREEDLRYEKVIIMTDADVDGAHI 551
           +LNV  +   KI  N++I  L+QA+G          +  + +RY K+IIMTDADVDGAHI
Sbjct: 475 VLNVEKSLDAKILTNKEIKSLIQAIGAGINIGKGKDFNMDKIRYHKIIIMTDADVDGAHI 534

Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKS-VYAHDEEHKQKILEEFKKHGKG 610
            +LLLTFF++    LIE+ +++   PPL++  +G  +  Y +DE    K  + F      
Sbjct: 535 RTLLLTFFFRHFRKLIEKGYIYFARPPLYKYQKGKGAPKYFYDE----KAKQTFATKNNL 590

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINK------DLNSLKDTQDSINKLMG 664
           K    R+KGLGEM  +QL ET MD   RTLL+  +        D  +L +   + N LMG
Sbjct: 591 KDGFQRYKGLGEMNPNQLWETTMDPETRTLLKASLKDALNALSDEEALMEADQTFNMLMG 650

Query: 665 TKADERFKFIQERASFIDDVG 685
            K   R  FI E+A   D + 
Sbjct: 651 EKVLPRKNFILEKALEAD-LD 670


>gi|269954816|ref|YP_003324605.1| DNA gyrase subunit B [Xylanimonas cellulosilytica DSM 15894]
 gi|269303497|gb|ACZ29047.1| DNA gyrase, B subunit [Xylanimonas cellulosilytica DSM 15894]
          Length = 681

 Score =  587 bits (1512), Expect = e-165,   Method: Composition-based stats.
 Identities = 247/678 (36%), Positives = 359/678 (52%), Gaps = 42/678 (6%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YDA +I +LEGLE VR RPGMYIG T E+ LHHL +EV+DN++DE +AGYA+ I+V+L  
Sbjct: 9   YDAGNITVLEGLEAVRKRPGMYIGSTGERGLHHLVTEVVDNSVDEALAGYADTIDVTLLA 68

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G + VVDNGRGIPV  HP    K T+E+++T LHAGGKF    Y +SGGLHGVGISVVN
Sbjct: 69  DGGVRVVDNGRGIPVAIHP-TEGKPTVEVVMTILHAGGKFGGGGYAVSGGLHGVGISVVN 127

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS  +   +AR    +  +F+ G       ++ +   + GT  TF  DP+IF     FD
Sbjct: 128 ALSRRVVSEIARDGYHWRMEFADGGHPVGELQRLEPTEETGTTQTFWADPEIFET-TEFD 186

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEK---------------------------YG 256
              L    Q  A+L+  +    + ++                                  
Sbjct: 187 FETLRARFQQMAFLNKGLTITLTDERAGHADLEDEVVGEVPVPDADGVVVVDHDDDPSTP 246

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PE 314
                 + + GGL  Y++    ++ +          E +    + ++E A+ W       
Sbjct: 247 PARTVTYRYDGGLTDYVKHLNSSKRVDLIHPEVIDFESEDTERKISLEIAMQWTSAYSES 306

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSV 372
           + +Y NTI T EGGTHE G R A+T  +  YA       ++  ++  DD+      ++S+
Sbjct: 307 VHTYANTISTTEGGTHEEGFRAAMTNLVNSYAREKGILKEKEDNLTGDDIREGLTAVISI 366

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
            + EP+F GQTKTKL + +A+  V+  +R+    +   +P EA  ++   I  S+ R+  
Sbjct: 367 KLGEPQFEGQTKTKLGNTEAKTFVQRVVREQLTDWFDSHPNEAKDVIRKAISASQARIAA 426

Query: 433 RKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           RK RE  R+   +    +PGKL DC  N     E++IVEGDSAGGSA + RN  NQA+LP
Sbjct: 427 RKAREATRRKGLLSSGGMPGKLKDCQSNRPEECEIYIVEGDSAGGSAVRGRNPHNQAILP 486

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHI 551
           +RGKILNV  A  +K  +N ++  L+ A G      +    LRY KVI+M DADVDG HI
Sbjct: 487 IRGKILNVERARLDKALSNLEVQSLITAFGTGIGEDFDASKLRYHKVILMADADVDGQHI 546

Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKG 610
           A+LLLT  ++ M  LIEQ H++L  PPL+R+        Y + ++ +   + E   +GK 
Sbjct: 547 ATLLLTLLFRYMRPLIEQGHVYLAMPPLYRLKWSNAPHDYVYSDKERDAFIREGLANGKR 606

Query: 611 KIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667
             +   I R+KGLGEM   +L ET MD + RTL +V ++          +  + LMG   
Sbjct: 607 MPKDKGIQRYKGLGEMDYQELWETTMDPDHRTLRQVTMDD----AAAADEIFSMLMGEDV 662

Query: 668 DERFKFIQERASFIDDVG 685
           + R  FIQ  A  +  + 
Sbjct: 663 ESRRSFIQRNAKDVRFLD 680


>gi|89114226|gb|ABD61708.1| DNA gyrase subunit B [Acholeplasma oculi]
 gi|89114230|gb|ABD61710.1| DNA gyrase subunit B [Acholeplasma oculi]
          Length = 594

 Score =  587 bits (1512), Expect = e-165,   Method: Composition-based stats.
 Identities = 242/612 (39%), Positives = 359/612 (58%), Gaps = 20/612 (3%)

Query: 51  ILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVV 110
           ILEGLE V+ RPGMYIG T E+ LHHL  E++DN++DE +AGYA+ I + +     + V 
Sbjct: 1   ILEGLEAVKKRPGMYIGSTGERGLHHLVWEIVDNSIDEALAGYASEITIEVQKGNIIQVT 60

Query: 111 DNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELH 170
           DNGRGIPV+ HPK   +  +E ILTTLHAGGKFD  +Y++SGGLHGVG SVVN LS    
Sbjct: 61  DNGRGIPVDIHPK-TKRPAVETILTTLHAGGKFDKGSYKVSGGLHGVGASVVNGLSLWYL 119

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V + +   I+ QK+ RGIP   L +        GTR TF  DP IF +   ++   L   
Sbjct: 120 VEIHKDGKIYEQKYERGIPAYDLRELGSTEE-TGTRTTFLADPLIFTETTVYNLETLKNR 178

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            Q  A+L+  +K      +        P +E F++ GG+  Y+Q   ++++ I  ++   
Sbjct: 179 IQQLAFLNKGLKLTLIDSR-----LETPYQETFHYEGGIVEYVQFLNQSKTKIHQDVIYT 233

Query: 291 KTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
           + E+ G    TVE A+ + +        + N I T EGG HE G ++ALTR I KYA+  
Sbjct: 234 EKEQDGV---TVEIAMQFVDSYSPNIHSFTNNISTTEGGMHEDGFKMALTRVISKYADDL 290

Query: 350 QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
           + K+   I+ +D       I+SV   EP+F GQTKTKL + + +      L +  + +L+
Sbjct: 291 KMKKDDVILGEDAREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAITSQILGESLERFLL 350

Query: 410 QNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFI 468
           +NP +A  +++ V+  +  R+  RK +E   RK+ +  L    KLADC       +E++I
Sbjct: 351 ENPQQAKLIVDKVLLATRARVAARKAKELTRRKSPLDALGFASKLADCRSKDPMKSEIYI 410

Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528
           VEGDSAGGSAKQ R+   QA++PLRGK+LNV  A  +K+ +N++I++L+QA+G     ++
Sbjct: 411 VEGDSAGGSAKQGRDSEFQAIMPLRGKVLNVEKARLDKMLSNKEIVNLIQAMGTGISDEF 470

Query: 529 REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKS 588
               LRY K++IMTDADVDGAHI +LLLTF ++ M  LI+  +++   PPL+++T G   
Sbjct: 471 DITKLRYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYKVTWGKNL 530

Query: 589 VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648
            Y + E+   + L+  +     K  I R+KGLGEM A QL +T MD   RTLL++++   
Sbjct: 531 KYVYSEDELNETLKSIE----TKPGIQRYKGLGEMNAEQLWDTTMDPATRTLLQIKLEDA 586

Query: 649 LNSLKDTQDSIN 660
           +    +     +
Sbjct: 587 I----EADQVFS 594


>gi|68535067|ref|YP_249772.1| DNA gyrase subunit B [Corynebacterium jeikeium K411]
 gi|68262666|emb|CAI36154.1| DNA gyrase subunit B [Corynebacterium jeikeium K411]
          Length = 674

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 257/686 (37%), Positives = 372/686 (54%), Gaps = 48/686 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            A      +Y ASSI ILEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +AGYA
Sbjct: 1   MAEPQKQSDYGASSITILEGLEAVRKRPGMYIGSTGERGLHHLVWEVVDNSVDEAMAGYA 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             + V+L  +G + V+D+GRGIPVE+HP      T+++++T LHAGGKFD+ +Y +SGGL
Sbjct: 61  KEVSVTLLADGGVEVIDDGRGIPVEDHP--TGPPTVQVVMTQLHAGGKFDSDSYAVSGGL 118

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVGISVVNALS  +   + R   ++ Q F+  +P    +   K     GT+  F PDP+
Sbjct: 119 HGVGISVVNALSTRMETEIKRDGYLWRQNFNEAVPEELQQV--KKARGTGTKQRFWPDPE 176

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI----------------- 257
           IF     F+   + K  Q  A+L+  +      ++E  E                     
Sbjct: 177 IFET-VEFNFDTVAKRLQEMAFLNKGLTIKLVDERENLEDDEELEAAAEDAAAPKSTEEK 235

Query: 258 ---------PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
                    P    F++P GLK Y+      R+ I   I +    ++      VE A+ W
Sbjct: 236 AAEAEKKKGPRTRVFHYPEGLKDYVAYINRKRTAIHPTIISFDVAEEDH---EVEVALQW 292

Query: 309 CEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
                + + ++ NTI T EGGTHE G R ALT  + +YA   +    +   +  DD+   
Sbjct: 293 NSGFSQSVHTFANTINTFEGGTHEEGFRAALTSLMNRYARDHKLLKAKDPKLSGDDVREG 352

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              ++SV + +P+F GQTKTKL + + +  V+ A+ +    +L  NP EA  +++  +  
Sbjct: 353 LAAVISVRVGDPQFEGQTKTKLGNTEIKGFVQRAVNEHLADWLDANPAEAKAIVDKAVAS 412

Query: 426 SEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           +  R   RK R++  RK+A     LPGKLADC       +EL+IVEGDSAGGSAK  R+ 
Sbjct: 413 AHARDAARKARDMVRRKSASDIGGLPGKLADCRSRDPKLSELYIVEGDSAGGSAKSGRDS 472

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA+LPLRGKILNV  A  +K+  N ++  ++ ALG     ++  + LRY K+++M DA
Sbjct: 473 MYQAILPLRGKILNVEKARMDKVLKNNEVQAIITALGTGIHDEFDIKKLRYHKIVLMADA 532

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603
           DVDG HIA+LLLT  ++ M  L+E+ +++L  PPL+++     +  +A  +  + + LEE
Sbjct: 533 DVDGQHIATLLLTLLFRFMRPLVEEGYVYLAQPPLYKLKWAKGEPGFAFSDRERDEQLEE 592

Query: 604 FKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
               G+ KI     I R+KGLGEM A +L ET MD   RTL RV    DL       +  
Sbjct: 593 GLAKGR-KINKDDGIQRYKGLGEMNAKELWETTMDPTVRTLRRV----DLEDAAAADEIF 647

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
           + LMG     R  FI + A  +  + 
Sbjct: 648 SVLMGDDVVARRSFITKNARDVRFLD 673


>gi|227893834|ref|ZP_04011639.1| DNA topoisomerase [Lactobacillus ultunensis DSM 16047]
 gi|227864323|gb|EEJ71744.1| DNA topoisomerase [Lactobacillus ultunensis DSM 16047]
          Length = 654

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 247/668 (36%), Positives = 368/668 (55%), Gaps = 20/668 (2%)

Query: 24  KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVID 83
             + +         +  +D Y+AS I++L GLE VR RPGMYIG T  + LHHL  E+ID
Sbjct: 2   ADNSKENLDKVKKYEKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEIID 61

Query: 84  NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143
           N++DE +AG+A  IEV+++ +G +TV D+GRGIPV+   K   +  LE + T LHAGGKF
Sbjct: 62  NSIDERLAGFATKIEVTVNEDGSVTVQDDGRGIPVDIQEK-TGRPALETVFTVLHAGGKF 120

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NK 202
               Y++SGGLHGVG SVVNALS +L VTV R    +   F  G     +++   V  ++
Sbjct: 121 GGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDGKKYFIDFDHGRVKDEMKQIGTVPLDE 180

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT + F PDP IF +   FD   L    +  A+L+  +K  ++  ++ +      E + 
Sbjct: 181 HGTIVHFYPDPDIFTETTTFDDKILKNRIRELAFLNKGLKLTFTDKRKDS-----AETDV 235

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           + + GG+K Y+    + + ++  E    ++   G     VE A+ +       + ++ N 
Sbjct: 236 YKYEGGIKEYVAFLNKGQEVLFDEPIYVESTYNGI---DVEVALQYTNGYKTTLMTFANN 292

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I T EGG HE+G + ALTR +  YA   +    +  ++  +D+      ++SV    P+F
Sbjct: 293 IHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGMTAVVSVKHPSPQF 352

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREV 438
            GQTKTKL + DA+  V+ A  + F  +L++NP    K++E   +        +R +   
Sbjct: 353 EGQTKTKLGNSDARTAVDKAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVT 412

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            +K+ +    LPGKLAD + N  + +ELFIVEG+SAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 413 RKKSGLEIANLPGKLADNTSNDPNISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILN 472

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  NQ+I  L  ALG    + +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 473 VEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIRTLLLTL 532

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY  M  +IE+ ++++  PPL+++ QG    Y   +E     L   +     K  + R+K
Sbjct: 533 FYNYMRPMIEKGYVYIARPPLYQVRQGKVVKYLDTDEELHDYLGSLQPS--PKPIVQRYK 590

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           GLGEM   QL +T M+   R L RV         KD       LMG +   R  FIQ+ A
Sbjct: 591 GLGEMDPEQLWDTTMNPENRRLDRVSPEY----AKDADAVFELLMGNEVAPRRDFIQKNA 646

Query: 679 SFIDDVGT 686
            +++++  
Sbjct: 647 KYVENLDA 654


>gi|58336359|ref|YP_192944.1| DNA gyrase subunit B [Lactobacillus acidophilus NCFM]
 gi|227902590|ref|ZP_04020395.1| DNA gyrase subunit B [Lactobacillus acidophilus ATCC 4796]
 gi|58253676|gb|AAV41913.1| DNA gyrase subunit B [Lactobacillus acidophilus NCFM]
 gi|227869679|gb|EEJ77100.1| DNA gyrase subunit B [Lactobacillus acidophilus ATCC 4796]
          Length = 654

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 247/654 (37%), Positives = 365/654 (55%), Gaps = 20/654 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +  +D Y+AS I++L GLE VR RPGMYIG T  + LHHL  EVIDN++DE +AG+A  I
Sbjct: 16  EKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEVIDNSIDERLAGFATKI 75

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           E++++ +G +TV D+GRGIPV+   K   +  LE + T LHAGGKF    Y++SGGLHGV
Sbjct: 76  EITINEDGSVTVQDDGRGIPVDIQEK-TGRPALETVFTVLHAGGKFGGGGYKVSGGLHGV 134

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIF 216
           G SVVNALS +L VTV R    +   F  G     +++   V  ++ GT + F PDP IF
Sbjct: 135 GASVVNALSTKLDVTVMRDGKKYFIDFDHGRVKDEMKQVGTVPLDQHGTIVHFYPDPDIF 194

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   FD   L    +  A+L+  ++  ++  ++        E + + F GG+K Y+   
Sbjct: 195 TETTTFDDKILKNRIRELAFLNKGLELTFTDKRK-----ETAETDVYKFEGGIKEYVAFL 249

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            E + ++  E    ++   G     VE A+ +       + ++ N I T EGG HE+G +
Sbjct: 250 NEGQEVLFDEPIYVESTYNGI---DVEVALQYTNGYKTTLMTFANNIHTYEGGMHEAGFK 306

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR +  YA   +    +  ++  +D+      ++SV    P+F GQTKTKL + DA+
Sbjct: 307 TALTRVVNDYAHKAKILKDKDDNLSGEDIREGMTAVVSVKHPSPQFEGQTKTKLGNSDAR 366

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
             V+ +  + F  +L++NP    K++E   +        +R +    +K+ +    LPGK
Sbjct: 367 TAVDKSFSETFSRFLMENPSIGRKIVEKGQLAERARSAAKRAREVTRKKSGLEIANLPGK 426

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LAD + N    +ELFIVEG+SAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I  NQ+
Sbjct: 427 LADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQE 486

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  L  ALG    + +     RY K+IIMTDADVDGAHI +LLLT FY  M  +I++ ++
Sbjct: 487 IRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYNYMRPMIDKGYV 546

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL+++ QG    Y   +E     L   +     K  + R+KGLGEM   QL ET 
Sbjct: 547 YIARPPLYQVRQGKVIKYLDTDEELHDYLGSLQPS--PKPVVQRYKGLGEMDPEQLWETT 604

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           M+   R L RV         KD  +    LMG +   R  FIQ+ A +++++  
Sbjct: 605 MNPENRRLDRVSPEY----AKDADEVFELLMGNEVAPRRDFIQKNAKYVENLDA 654


>gi|161506639|ref|YP_001576587.1| DNA gyrase [Lactobacillus helveticus DPC 4571]
 gi|160347628|gb|ABX26302.1| DNA gyrase [Lactobacillus helveticus DPC 4571]
          Length = 654

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 246/668 (36%), Positives = 366/668 (54%), Gaps = 20/668 (2%)

Query: 24  KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVID 83
             + +         +  +D Y+AS I++L GLE VR RPGMYIG T  + LHHL  E+ID
Sbjct: 2   ADNSKKNLDKVKKYEKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEIID 61

Query: 84  NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143
           N++DE +AG+A  IE++++ +G +TV D+GRGIPV+   K   +  LE + T LHAGGKF
Sbjct: 62  NSIDERLAGFATKIEITVNEDGSVTVQDDGRGIPVDIQKK-TGRPALETVFTVLHAGGKF 120

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NK 202
               Y++SGGLHGVG SVVNALS +L VTV R    +   F  G     +++   V   +
Sbjct: 121 GGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDGKKYFIDFDHGRVKDEMKQIGTVPLEQ 180

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT + F PDP IF +   FD   L    +  A+L+  +K  ++  ++ +      E + 
Sbjct: 181 HGTIVHFYPDPDIFTETTTFDDKILKNRIRELAFLNKGLKLTFTDKRKDS-----AETDV 235

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           + + GG+K Y+    + + ++  E    ++   G     VE A+ +       + ++ N 
Sbjct: 236 YKYEGGIKEYVAFLNKGQEVLFDEPIYVESTYNGI---DVEVALQYTNGYKTTLMTFANN 292

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I T EGG HE+G + ALTR +  YA   +    +  ++  +D+      ++SV    P+F
Sbjct: 293 IHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGMTAVVSVKHPSPQF 352

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREV 438
            GQTKTKL + DA+  V+ +  + F  +L++NP    K++E   +        +R +   
Sbjct: 353 EGQTKTKLGNSDARTAVDKSFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVT 412

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            +K+ +    LPGKLAD + N    +ELFIVEG+SAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 413 RKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILN 472

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  NQ+I  L  ALG    + +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 473 VEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIRTLLLTL 532

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY  M  +IE+ ++++  PPL+++ QG    Y   +E     L   +     K  + R+K
Sbjct: 533 FYNYMRPMIEKGYVYIARPPLYQVRQGKVIKYLDTDEELHDYLGSLQPS--PKPVVQRYK 590

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           GLGEM   QL ET M+   R L RV         KD       LMG +   R  FIQ+ A
Sbjct: 591 GLGEMDPEQLWETTMNPENRRLDRVSPEY----AKDADAVFELLMGNEVAPRRDFIQKNA 646

Query: 679 SFIDDVGT 686
            +++++  
Sbjct: 647 KYVENLDA 654


>gi|260579565|ref|ZP_05847436.1| DNA gyrase subunit B [Corynebacterium jeikeium ATCC 43734]
 gi|258602336|gb|EEW15642.1| DNA gyrase subunit B [Corynebacterium jeikeium ATCC 43734]
          Length = 674

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 257/686 (37%), Positives = 372/686 (54%), Gaps = 48/686 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            A      +Y ASSI ILEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +AGYA
Sbjct: 1   MAEPQKQSDYGASSITILEGLEAVRKRPGMYIGSTGERGLHHLVWEVVDNSVDEAMAGYA 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             + V+L  +G + V+D+GRGIPVE+HP      T+++++T LHAGGKFD+ +Y +SGGL
Sbjct: 61  KEVSVTLLADGGVEVIDDGRGIPVEDHP--TGPPTVQVVMTQLHAGGKFDSDSYAVSGGL 118

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVGISVVNALS  +   + R   ++ Q F+  +P    +   K     GT+  F PDP+
Sbjct: 119 HGVGISVVNALSTRMETEIKRDGYLWRQNFNEAVPEELQQV--KKARGTGTKQRFWPDPE 176

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI----------------- 257
           IF     F+   + K  Q  A+L+  +      ++E  E                     
Sbjct: 177 IFET-VEFNFDTVAKRLQEMAFLNKGLTIKLVDERENLEDDEELEAAAEDAAAPKSTEEK 235

Query: 258 ---------PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
                    P    F++P GLK Y+      R+ I   I +    ++      VE A+ W
Sbjct: 236 AAEAEKKKGPRTRVFHYPEGLKDYVAYINRKRTAIHPTIISFDVAEEDH---EVEVALQW 292

Query: 309 CEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
                + + ++ NTI T EGGTHE G R ALT  + +YA   +    +   +  DD+   
Sbjct: 293 NSGFSQSVHTFANTINTFEGGTHEEGFRAALTSLMNRYARDHKLLKAKDPKLSGDDVREG 352

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              ++SV + +P+F GQTKTKL + + +  V+ A+ +    +L  NP EA  +++  +  
Sbjct: 353 LAAVISVRVGDPQFEGQTKTKLGNTEIKGFVQRAVNEHLADWLDANPAEAKAIVDKAVAS 412

Query: 426 SEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           +  R   RK R++  RK+A     LPGKLADC       +EL+IVEGDSAGGSAK  R+ 
Sbjct: 413 AHARDAARKARDMVRRKSASDIGGLPGKLADCRSRDPKLSELYIVEGDSAGGSAKSGRDS 472

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA+LPLRGKILNV  A  +K+  N ++  ++ ALG     ++  + LRY K+++M DA
Sbjct: 473 MYQAILPLRGKILNVEKARMDKVLKNNEVQAIITALGTGIHDEFDIKKLRYHKIVLMADA 532

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603
           DVDG HIA+LLLT  ++ M  L+E+ +++L  PPL+++     +  +A  +  + + LEE
Sbjct: 533 DVDGQHIATLLLTLLFRFMRPLVEEGYVYLAQPPLYKLKWAKGEPGFAFSDRERDEQLEE 592

Query: 604 FKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
               G+ KI     I R+KGLGEM A +L ET MD   RTL RV    DL       +  
Sbjct: 593 GLAQGR-KINKDDGIQRYKGLGEMNAKELWETTMDPTVRTLRRV----DLEDAAAADEIF 647

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
           + LMG     R  FI + A  +  + 
Sbjct: 648 SVLMGDDVVARRSFITKNARDVRFLD 673


>gi|28627816|gb|AAN75468.1| DNA gyrase subunit B [Streptomyces roseochromogenes subsp.
           oscitans]
          Length = 677

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 245/680 (36%), Positives = 373/680 (54%), Gaps = 24/680 (3%)

Query: 22  KLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEV 81
             + + + P S    +  A+ +YDA++I +L+GL+ VR RPGMYIG T E+ LHHL  E+
Sbjct: 5   DTRTATDTPGSQQPGHVGAA-SYDANAITVLDGLDAVRKRPGMYIGSTGERGLHHLVQEL 63

Query: 82  IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141
           +DN++DE +AG A+ I+V++  +G + VVDNGRGIPV  HP    +  +E++LT LHAGG
Sbjct: 64  VDNSVDEALAGVADRIDVTILADGGVRVVDNGRGIPVGTHP-VEKRPAVEVVLTVLHAGG 122

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KF    Y +SGGLHGVG+SVVNALS  L   +      ++Q +  G P +PL + E    
Sbjct: 123 KFGGGGYAVSGGLHGVGLSVVNALSTRLSAEIWTDGYRWTQDYRDGAPTAPLARHEATSR 182

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------EIA 252
             GT +TF  D  IF     +    L +  Q  A+L+  +    + ++         + A
Sbjct: 183 -TGTSLTFWADGDIFET-TEYSFETLARRFQEMAFLNRGLTLTLTDERPSARATAAADEA 240

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
           +     +   + + GG+  ++      +   +         +      + E A+ W  + 
Sbjct: 241 DSDPAAKTVSYRYDGGITDFVAYLNSRKGEPAHPSVITIAAEDTERLLSAEVALQWNGQY 300

Query: 313 PE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGI 369
            + + SY N I T EGGTHE G R ALT  + +YA   +   ++  ++  +D+      I
Sbjct: 301 TDSVYSYANGIHTHEGGTHEEGFRTALTTVVNRYAREKKLLREKDANLSGEDVREGLTAI 360

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           +SV + EP+F GQTKTKL + +A+  V+  + +    +  +NP EA  ++   I+ +  R
Sbjct: 361 ISVKLGEPQFEGQTKTKLGNTEARTFVQKIVHEHLTDWFDRNPNEAADIVRKAIQAATAR 420

Query: 430 LRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
           +  RK R++ R+   +    LPGKL+DC  N    +E+F+VEGDSAGGSAK  RN   QA
Sbjct: 421 VAARKARDLTRRKGLLETAALPGKLSDCQSNDPAMSEIFVVEGDSAGGSAKSGRNPQYQA 480

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           +LP+RGKILNV  A  +KI +NQ+I  L+ A G      +    LRY K+I+M DADVDG
Sbjct: 481 ILPIRGKILNVEKARIDKILHNQEIQALISAFGTGVHEDFDIAKLRYHKIILMADADVDG 540

Query: 549 AHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTK-SVYAHDEEHKQKILEEFKKH 607
            HI +LLLTF ++ M  L+E+ H++L  PPL++I  G     YA+ +  +  +LE  ++ 
Sbjct: 541 QHINTLLLTFLFRFMRPLVEEGHVYLSRPPLYKIKWGRDHVEYAYSDRERDVLLERGRQD 600

Query: 608 GK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT 665
           G+      I RFKGLGEM A +L+ T MD + R L +V ++          D  + LMG 
Sbjct: 601 GRRIKDDSIQRFKGLGEMNAEELRVTTMDPDHRVLGQVTLDD----AAVADDLFSVLMGE 656

Query: 666 KADERFKFIQERASFIDDVG 685
             + R  FIQ  A  +  + 
Sbjct: 657 DVEARRHFIQRNAKDVRFLD 676


>gi|320009755|gb|ADW04605.1| DNA gyrase, B subunit [Streptomyces flavogriseus ATCC 33331]
          Length = 689

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 248/686 (36%), Positives = 369/686 (53%), Gaps = 28/686 (4%)

Query: 21  EKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSE 80
                  E   S A      + +YDAS+I +LEGL+ VR RPGMYIG T E+ LHHL  E
Sbjct: 10  ADSGNPNENIPSTAGEPGEVTASYDASAITVLEGLDAVRKRPGMYIGSTGERGLHHLVQE 69

Query: 81  VIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140
           V+DN++DE +AG+A+ I+V++  +G + VVDNGRGIPV   P    K  +E++LT LHAG
Sbjct: 70  VVDNSVDEAMAGHADTIDVTIFADGGVRVVDNGRGIPVGIVP-SEGKPAVEVVLTVLHAG 128

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKF    Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL + E   
Sbjct: 129 GKFGGGGYAVSGGLHGVGVSVVNALSTRVSVEVKTDGYRWTQDYKLGVPTAPLARHEATE 188

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE------- 253
              GT +TF  D  +F     +    L +  Q  A+L+  +    + ++E A+       
Sbjct: 189 E-TGTSVTFWADGDVFET-TDYSFETLSRRFQEMAFLNKGLTLKLTDEREEAKATAGADS 246

Query: 254 -------KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
                           +++  G+  +++     +  +  +       +      + E A+
Sbjct: 247 AEVVDVPDEESTRTVTYHYENGIVDFVKYLNSRKGELIHQSVIDIEAEDKDRLLSAEIAM 306

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLM 363
            W  +    + S+ N I T EGGTHE G R ALT  + +YA   +   ++  ++  +D+ 
Sbjct: 307 QWNTQYTEGVYSFANAIHTHEGGTHEEGFRAALTSLVNRYARDKKLLREKDDNLTGEDVR 366

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                I+SV + EP+F GQTKTKL + +A+  V+  + +    +  +NP EA  ++   I
Sbjct: 367 EGLTAIISVKLGEPQFEGQTKTKLGNTEAKTFVQKVVHEQLTDWFDRNPNEAADIIRKGI 426

Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
             S  R+  RK R++ R+   +    LPGKL+DC  N     E+FIVEGDSAGGSAK  R
Sbjct: 427 AASTARVAARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGR 486

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           N   QA+LP+RGKILNV  A  +KI  N ++  L+ A G      +  E LRY K+I+M 
Sbjct: 487 NPMYQAILPIRGKILNVEKARIDKILQNTEVQALISAFGTGVHEDFDIEKLRYHKIILMA 546

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKIL 601
           DADVDG HI +LLLTF ++ M  L+EQ +++L  PPL++I  G     YA+ +  +  ++
Sbjct: 547 DADVDGQHINTLLLTFLFRFMRPLVEQGNVYLSRPPLYKIKWGRDDFEYAYSDRERDALV 606

Query: 602 EEFKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
              K++GK   +  I RFKGLGEM A +L+ T MD + R L +V ++          D  
Sbjct: 607 ALGKQNGKRIKEDSIQRFKGLGEMNAEELRVTTMDVDHRVLGQVTLDD----AAQADDLF 662

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
           + LMG   + R  FIQ  A  +  + 
Sbjct: 663 SVLMGEDVEARRSFIQRNAKDVRFLD 688


>gi|284988639|ref|YP_003407193.1| DNA gyrase subunit B [Geodermatophilus obscurus DSM 43160]
 gi|284061884|gb|ADB72822.1| DNA gyrase, B subunit [Geodermatophilus obscurus DSM 43160]
          Length = 680

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 238/683 (34%), Positives = 364/683 (53%), Gaps = 40/683 (5%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
               + +D Y  SSI +LEGLE VR RPGMYIG T E+ LHH+  EV+DN++DE +AG+ 
Sbjct: 5   PKTDAQADAYSGSSITVLEGLEAVRKRPGMYIGSTGERGLHHMVWEVVDNSVDEALAGHC 64

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + + V+L  +G + V DNGRGIPV+ HP    + T+E+++T LHAGGKFD  +Y +SGGL
Sbjct: 65  DTVRVTLLPDGGVRVEDNGRGIPVDMHP-VEKRPTVEVVMTILHAGGKFDGKSYAVSGGL 123

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG++VVNALS EL V + R  T + Q ++   P    +     +  RGT+ITF  DP 
Sbjct: 124 HGVGVTVVNALSTELDVRIWRDGTEWHQHYTASEPGPLEKVGRTTK--RGTQITFWADPG 181

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-----------------------EI 251
           IF     +    + +  Q  A+L+  ++     ++                         
Sbjct: 182 IFETTT-YSFDTISRRLQEMAFLNQGLRIVLRDERPGQGKAETGMAEEVSLAEAAPAPTS 240

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK--KGTHRGTVEWAIAWC 309
            E    P +  + +  GL+ ++      ++ I   +     E   K     +V+ A+ W 
Sbjct: 241 EEPAFEPTEITYLYEDGLRDFVAHINRTKTAIHRSVIGFSAEGTGKNDMAMSVDIAMQWS 300

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISA 366
           E     + ++ NTI T EGGTHE G R ALT  + +YAE  +    +   +  +D+    
Sbjct: 301 EAYSESVHTFANTINTHEGGTHEEGFRAALTSIVNRYAEDKKLFKSKDEKLTGEDIREGL 360

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             I+SV + +P+F GQTKTKL + + +  V+    +   H+   NP EA +++      +
Sbjct: 361 AAIVSVKLGDPQFEGQTKTKLGNTEVKGFVQRVCNEQIGHWFEANPAEAKQIITKASSAA 420

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
             R   ++ R++ RK  +    LPGKLADC       +E++IVEGDSAGGSAK  R+   
Sbjct: 421 RARRAAQQARQLARKNPLNSTGLPGKLADCRSTDPRNSEVYIVEGDSAGGSAKSGRDSMF 480

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADV 546
           QA+LP+RGKI+NV  A  +++  N ++  ++ A G     ++    LRY K+++M DADV
Sbjct: 481 QAILPIRGKIINVEKARIDRVLKNTEVQSMITAFGTGIHDEFDLSKLRYHKIVLMADADV 540

Query: 547 DGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKS--VYAHDEEHKQKILEEF 604
           DG HI +LLLT  ++ M  L+E  H++L  PPL++I  G K    Y + ++ K+  L+  
Sbjct: 541 DGQHIRTLLLTLLFRFMRPLVEAGHVYLAQPPLYKIKWGGKVGDEYVYTDKEKEGALKLG 600

Query: 605 KKHGKGKIE--ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKL 662
            + G+   +  I RFKGLGEM A++L ET M+   R LL+V +           +  + L
Sbjct: 601 AEAGRRIKDDAIQRFKGLGEMNATELWETTMNPETRVLLQVTLED----AATADELFSVL 656

Query: 663 MGTKADERFKFIQERASFIDDVG 685
           MG   D R  FI   A  +  + 
Sbjct: 657 MGEDVDARRSFITRNAKDVRFLD 679


>gi|94990278|ref|YP_598378.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS10270]
 gi|94543786|gb|ABF33834.1| Topoisomerase IV subunit B [Streptococcus pyogenes MGAS10270]
          Length = 650

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 243/653 (37%), Positives = 373/653 (57%), Gaps = 34/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V +
Sbjct: 10  NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G ++V D+GRG+P   H       T+++I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 70  NKDGSVSVADSGRGMPTGQH--AMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 127

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R  +++ Q+F   G P++ L+K     ++K GT +TF PD KIF   
Sbjct: 128 VNALSAWLEVEITRDGSVYRQRFENGGKPVTILKKVGTAPKSKSGTVVTFMPDDKIFST- 186

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   VK   +  +        P  EEF++  G++ +++   E+
Sbjct: 187 IDFKFNTISERLKESAFLLKNVKMSLTDLRGDD-----PIIEEFHYENGVQDFVEYLNED 241

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++  I+    ++       VE A+ + +   +   S+ N + T +GG+HE+GL+ A+
Sbjct: 242 KETLTPVIYMEGQDQD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ + E   +F GQTK KL S  A+ 
Sbjct: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 357

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            VE+ + +    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 358 IVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 417

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL       A   EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N+
Sbjct: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  +V  +G    + +  ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 478 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 537

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     K  YA      + + +EF K       + R+KGLGEM A+Q
Sbjct: 538 VYIALPPLYKMSKGKGKTEKVSYAWTYGELEDLRKEFGKGAI----LQRYKGLGEMNANQ 593

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET MD   RTL+RV I+     L   +  ++ LMG KA  R ++I++   F
Sbjct: 594 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 642


>gi|238917147|ref|YP_002930664.1| DNA gyrase subunit B [Eubacterium eligens ATCC 27750]
 gi|238872507|gb|ACR72217.1| DNA gyrase subunit B [Eubacterium eligens ATCC 27750]
          Length = 638

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 246/656 (37%), Positives = 352/656 (53%), Gaps = 28/656 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A++ YDA+SI ILEGLE VRMRPGMYIG    K L+HL  E+ DN++DE +AG+   I V
Sbjct: 2   AANKYDANSISILEGLEAVRMRPGMYIGSVGTKGLNHLIYEIADNSVDEHLAGFCTQINV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L+ +G  T+ DNGRGIP+  HPK      +E++ T LHAGGKF +  Y+ISGGLHGVG 
Sbjct: 62  TLNDDGTATIKDNGRGIPIGIHPKA-GIPAVEVVFTVLHAGGKFGDGGYKISGGLHGVGA 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS  L V +     ++ Q++ RG   +PLEK     +N  GT +TF PD +IF  
Sbjct: 121 SVVNALSVWLEVEIRVDGGVYKQRYERGKATAPLEKIGTCRKNDTGTTVTFLPDGEIFEK 180

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F A  +       AYL+  +   +   ++ +E       E F+ P GLK Y++    
Sbjct: 181 -TRFKADSIKSRLHETAYLNPGLTIEFEDKRKGSEDK-----ETFHEPDGLKAYIKDLNN 234

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVA 337
            +  +   ++  K ++       VE A  +  E  E    +CN I T EGGTH +G +  
Sbjct: 235 GKETVCDIVYFKKKQED----IEVEVAFQFVNEFEENILGFCNNIYTQEGGTHITGFKTK 290

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            T  I +YA        +  +    D+      +++V    P F GQTKTKL + DA   
Sbjct: 291 FTMIINQYARELGILKDKDANFTGLDVRNGMTAVVAVKHPAPRFEGQTKTKLDNPDAGTV 350

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           V N   D    Y  ++  +   ++    + ++ R    K +          +   GKLA+
Sbjct: 351 VANVTGDEVQLYFDRHLDDLNAVIACAEKSAKIRKAEEKAKTNMLTKQKFSIDSNGKLAN 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C        E+FIVEGDSAGGSAK ARNR  QA+LP+RGKILNV  A  +K+  N +I  
Sbjct: 411 CESKNPEECEVFIVEGDSAGGSAKTARNRRTQAILPIRGKILNVEKASIDKVLANAEIKT 470

Query: 516 LVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++ +  C       + +    LRY K+IIMTDADVDGAHI +LLLTFFY+ M +LI Q H
Sbjct: 471 MINSFNCGFLEGYGNDFDISRLRYNKIIIMTDADVDGAHIDTLLLTFFYRFMPELINQGH 530

Query: 572 LFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           +++ +PPL+++  +  +  Y +D++  +      KKH  G   + R+KGLGEM   QL E
Sbjct: 531 VYIATPPLYKVVPKKGEGEYLYDDKALEDYR---KKHTSGTFTLQRYKGLGEMDPDQLWE 587

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           T ++   R L +VEI     + + T      LMGT    R +FI   A+  + +  
Sbjct: 588 TTLNPETRILKQVEIEDARLATEVTA----MLMGTDVPPRREFIYTHANEAE-IDA 638


>gi|118615924|ref|YP_904256.1| DNA gyrase subunit B [Mycobacterium ulcerans Agy99]
 gi|118568034|gb|ABL02785.1| DNA gyrase (subunit B) GyrB [Mycobacterium ulcerans Agy99]
          Length = 692

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 257/703 (36%), Positives = 373/703 (53%), Gaps = 49/703 (6%)

Query: 19  SSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLF 78
           +  +     E   + A   + A D Y AS+I +LEGLE VR RPGMYIG T E+ LHHL 
Sbjct: 2   TGPRASNPEENIRTVAAQKKKAQDEYGASAITVLEGLEAVRKRPGMYIGSTGERGLHHLV 61

Query: 79  SEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLH 138
            EV+DN++DE +AGYA  + V L  +G + V DNGRGIPV  H       T+++++T LH
Sbjct: 62  WEVVDNSVDEAMAGYATQVNVRLLDDGSVEVADNGRGIPVAMH--ATGAPTVDVVMTQLH 119

Query: 139 AGGKF--DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK 196
           AGGKF  +NS Y +SGGLHGVG+SVVNALS  L V + R    +SQ + R  P +   K+
Sbjct: 120 AGGKFGGENSGYNVSGGLHGVGVSVVNALSTRLEVDIKRDGYEWSQFYDRAQPGTL--KQ 177

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY- 255
            +   K GT I F  DP IF     +D   + +  Q  A+L+  +    + ++   ++  
Sbjct: 178 GEATKKTGTAIRFWADPDIFET-TEYDFETVARRLQEMAFLNKGLTINLTDERVTPDEVV 236

Query: 256 ------------------------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGK 291
                                      +   F++PGGL  +++     +S I   I   +
Sbjct: 237 DDVVSDTAEAPKSAQEKAAESTAPHKVKSRTFHYPGGLVDFVKHINRTKSPIQQSIVDFE 296

Query: 292 TEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AEL 348
            +  G     VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   + 
Sbjct: 297 GKGSGH---EVEIAMQWNGGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKK 353

Query: 349 TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
               +  ++  DD+      ++SV + EP+F GQTKTKL + + +  V+    +   H+ 
Sbjct: 354 LLKDKDPNLTGDDIREGLAAVISVRVAEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWF 413

Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
             NP EA  ++   +  ++ RL  RK RE V RK+A     LPGKLADC       +EL+
Sbjct: 414 EANPSEAKTIVNKAVSSAQARLAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELY 473

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           +VEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     +
Sbjct: 474 VVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDE 533

Query: 528 YREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT- 586
           +    LRY K+++M DADVDG HI++LLLT  ++ M  LIE  H+FL  PPL+++     
Sbjct: 534 FDLSKLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRT 593

Query: 587 KSVYAHDEEHKQKILEEFKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLR 642
           +  +A+ +  +  +LE   K GK KI     I R+KGLGEM A +L ET MD + R L +
Sbjct: 594 EPEFAYSDRERDGLLEAGLKAGK-KINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQ 652

Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           V ++          +  + LMG   D R  FI   A  +  + 
Sbjct: 653 VTLDD----AAAADELFSILMGEDVDARRSFITRNAKDVRFLD 691


>gi|269977746|ref|ZP_06184706.1| DNA gyrase, B subunit [Mobiluncus mulieris 28-1]
 gi|269934050|gb|EEZ90624.1| DNA gyrase, B subunit [Mobiluncus mulieris 28-1]
          Length = 671

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 251/676 (37%), Positives = 356/676 (52%), Gaps = 38/676 (5%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +   ++YDA+ I +LEGLE VR+RPGMYIG T E+ LHHL  EV+DN++DE +AGY + I
Sbjct: 5   EKPEEHYDAADITVLEGLEAVRVRPGMYIGSTGERGLHHLVYEVVDNSVDEALAGYCDHI 64

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           EV+L  +G + V DNGRGIPV  HP   ++ T+E+++T LHAGGKF  S+Y +SGGLHGV
Sbjct: 65  EVTLQADGSVKVCDNGRGIPVAEHP-TEHRPTVEVVMTILHAGGKFGGSSYAVSGGLHGV 123

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           GISVVNALS ++  TV R    +  +F  G  ++   ++ K   + GT   F PDP IF 
Sbjct: 124 GISVVNALSTKVLTTVKRDGYEWHVEFGNGGQVTKPLERGKETTETGTEQIFYPDPAIFE 183

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP----------------EKE 261
               FD   L    Q  A+L+  ++   + ++      G                     
Sbjct: 184 T-VEFDYETLRTRFQQMAFLNKGLRITITDERPNVTDEGDFVTGDADADADSPKVGHRHV 242

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            + +  GL  Y+      +            E        +E A+ W       I +Y N
Sbjct: 243 SYCYENGLHDYVSFINSTKKSEVVHPEVIDFEATQDDSMALEIALQWTGAYSESIYTYAN 302

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
           TI T EGGTHE G R ALT  + KYA        +  ++  DD       ++SV +R P+
Sbjct: 303 TINTTEGGTHEEGFRSALTSLMNKYARSLGVLKDKDENLSGDDCREGLTAVISVKLRTPQ 362

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE- 437
           F GQTKTKL + +A+  V+  +      +   +P EA  +L         R   RK R+ 
Sbjct: 363 FEGQTKTKLGNTEARTFVQQTVYSQLGDWFDAHPTEAKAILLKAQSAQIARNAARKARDA 422

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
             RKTA+    +PGKL DCS   A   E+FIVEGDSAGGSA   R+ ++QA+LPLRGKIL
Sbjct: 423 TRRKTALDSFSMPGKLRDCSSRDASQCEIFIVEGDSAGGSAVAGRDPAHQAILPLRGKIL 482

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557
           NV  A  +K  +N++I  L+ A G      +    LRY K+++M DADVDG HI +LLLT
Sbjct: 483 NVEKARLDKALDNKEIQALITAFGTGIGEDFDLGKLRYYKIVLMADADVDGQHITTLLLT 542

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILE-------EFKKHGK 609
             ++ M  LIE+ H+FL +PPL+R+    +   + + ++ K+K+L+          K G 
Sbjct: 543 LLFRYMKPLIEEGHVFLATPPLYRLKWSNRPHQFVYSDKEKEKLLDVGLEGGARLPKEGG 602

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669
               I R+KGLGEM   +L ET MD   R L +V +++         ++   LMG     
Sbjct: 603 ----IQRYKGLGEMDPKELWETTMDPQVRLLKQVTMDE----AASADETFALLMGEDVAS 654

Query: 670 RFKFIQERASFIDDVG 685
           R  FIQ  A  +  + 
Sbjct: 655 RRSFIQRNAQDVRFLD 670


>gi|256847177|ref|ZP_05552623.1| DNA topoisomerase IV, B subunit [Lactobacillus coleohominis
           101-4-CHN]
 gi|256715841|gb|EEU30816.1| DNA topoisomerase IV, B subunit [Lactobacillus coleohominis
           101-4-CHN]
          Length = 670

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 244/656 (37%), Positives = 366/656 (55%), Gaps = 34/656 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
                YD+SSI+IL+GLE VR RPGMYIG TD   LHHL  E++DN++DE ++GY + I 
Sbjct: 3   KKEYQYDSSSIKILKGLEAVRKRPGMYIGSTDTYGLHHLVYEIVDNSVDEALSGYGDEIN 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN-STYEISGGLHGV 157
           V++  +  +TV D+GRG+PV  H     K T E+I+T LHAGGKF     Y+ SGGLHGV
Sbjct: 63  VTIGADNSITVQDHGRGMPVGMH--ASGKPTPEVIMTVLHAGGKFGQADGYKTSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           G SVVNALS  L +T+ R +  + +KF  G  P+  L+K  K ++  GT ++F+PDP IF
Sbjct: 121 GASVVNALSTNLTLTIVRDHVRYQEKFKDGGQPVGTLKKLGKTKDSSGTTVSFKPDPAIF 180

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                +D   L +  +  A+L   ++   +  +   E+        F +  G+K +++  
Sbjct: 181 STTV-YDYNTLARRLRESAFLLKGLRITLTDQRPGQEQSQT-----FQYENGIKDFVEYL 234

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335
            E++  +   + T   ++ G     V+ A  + +   E   S+ N + T +GGTHE+G R
Sbjct: 235 NEDKDTLGKIL-TFTGKQDGV---EVDVAAQYNDGYSENVLSFVNNVRTPDGGTHEAGFR 290

Query: 336 VALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLD 391
            A T+    YA  T   +    ++   D+      ++SV I E   +F GQTK KL + +
Sbjct: 291 SAWTKSFNDYARKTNLLKDRDKNLEGSDVREGLTAVVSVRIPERILQFEGQTKDKLGTPE 350

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL---R 448
           A++ V+N + +  ++ L++N   A  L+   ++  + R   RK R+++R    R      
Sbjct: 351 ARKIVDNIVSEQLNYALLENGDFAQMLIRKAVKARQAREAARKARDLSRNGKKRSRKERN 410

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           L GKL       A   ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + + 
Sbjct: 411 LSGKLTPAQSKNAQKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVL 470

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            N+++  ++  +G    S++   D  Y+K+IIMTDAD DGAHI  LLLTFFY+ M  +IE
Sbjct: 471 KNEELNTIIYTVGAGVGSEFNVADSNYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIE 530

Query: 569 QKHLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
              +++  PPL+R+ QG     K  YA   E   K+ ++  K       + RFKGLGEM 
Sbjct: 531 AGKVYIALPPLYRLQQGRGAKNKITYAWTNEELTKLTKKMGKTA----SLQRFKGLGEMN 586

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           A QL ET M+   RTL+RV+IN      +  +  +  LMG K + R ++I++   F
Sbjct: 587 ADQLWETTMNPETRTLIRVQIND----AQLAEKRVTTLMGNKVEPRREWIEKNVQF 638


>gi|227496601|ref|ZP_03926879.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces urogenitalis DSM
           15434]
 gi|226833881|gb|EEH66264.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces urogenitalis DSM
           15434]
          Length = 690

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 252/694 (36%), Positives = 368/694 (53%), Gaps = 34/694 (4%)

Query: 20  SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79
           S++ +                S  Y AS I +LEGLE VR RPGMYIG T E+ LHHL  
Sbjct: 2   SDQDQPVTTPEAGAEAHIGHPSGEYGASDITVLEGLEAVRKRPGMYIGSTGERGLHHLVY 61

Query: 80  EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139
           EV+DN++DE +AG+ + IEV++  +G L VVDNGRGIPV+ HP   ++ T+E+++T LHA
Sbjct: 62  EVVDNSVDEALAGFCDHIEVTIQADGGLKVVDNGRGIPVDEHP-TEHRPTVEVVMTVLHA 120

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKF    Y +SGGLHGVGISVVNALS  +   V RQ  ++   F  G          + 
Sbjct: 121 GGKFGGGGYAVSGGLHGVGISVVNALSTRVDTEVRRQGHVWRMSFGDGGHPKTPLVMGEE 180

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY---- 255
               GT   F PDP+IF     FD   L +  Q  A+L+  ++   + ++E         
Sbjct: 181 TEATGTTQIFYPDPEIFET-VQFDYETLRRRFQQMAFLNKGLRITLTDEREGVNDDGDEI 239

Query: 256 ------------GIPEKEEFYFPGGLKTYLQTKLENR--SLISSEIFTGKTEK--KGTHR 299
                           +  + +  GL  Y+    +++   LI  EI   + EK    TH 
Sbjct: 240 TGDEAGTADDPVKGKRQVSYCYANGLHDYVAFLNKSKKVELIHPEIIDFEAEKALDETHG 299

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
            ++E A+ W       + +Y NTI T EGGTHE G R ALT  I KY         R  +
Sbjct: 300 ISLEIAMQWTSAYSESVHTYANTINTTEGGTHEEGFRTALTTLINKYGREKGLIKDRDDN 359

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           +  DD+      ++SV + EP+F GQTKTKL + +A+  V+  + D    +L  +P +A 
Sbjct: 360 LTGDDIREGLTAVISVKLSEPQFEGQTKTKLGNTEARTFVQQTVYDRLGDWLDSHPADAK 419

Query: 417 KLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            ++    + +  R+  RK RE  R+   +    +PGKL DCS   A   E+FIVEGDSAG
Sbjct: 420 AVITKASQAAAARVAARKAREATRRKGVLESASMPGKLRDCSSRNAAECEIFIVEGDSAG 479

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           GSA   R+  +QA++P+RGKILNV  A  ++  ++  I  L+ A G      +    LRY
Sbjct: 480 GSAVGGRDPEHQAIMPIRGKILNVEKARLDRALSSDTIRSLITAFGTGIGEDFDISKLRY 539

Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDE 594
            K++IM DADVDG HIA+LLLT  ++ M  LIEQ H ++  PPL+R+     +  +A+ +
Sbjct: 540 GKIVIMADADVDGQHIATLLLTLLFRYMRPLIEQGHTYIAMPPLYRLKWSNAEHEFAYSD 599

Query: 595 EHKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651
             + ++L    + G+   +   I R+KGLGEM   +L ET MD   R L +V +++    
Sbjct: 600 AERDQLLRAGAEAGRRLPKEGGIQRYKGLGEMNDHELWETTMDPAARILKQVTLDE---- 655

Query: 652 LKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             D  ++ + LMG   ++R  FIQ  A+ +  + 
Sbjct: 656 AADADETFSILMGDDVEQRRSFIQRNAADVRFLD 689


>gi|222097051|ref|YP_002531108.1| DNA topoisomerase iv subunit b [Bacillus cereus Q1]
 gi|221241109|gb|ACM13819.1| DNA topoisomerase IV, B subunit [Bacillus cereus Q1]
          Length = 640

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 238/642 (37%), Positives = 356/642 (55%), Gaps = 36/642 (5%)

Query: 52  LEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVD 111
           LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AG+ + I V +  +  ++V+D
Sbjct: 2   LEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIHKDNSISVID 61

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171
            GRG+P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVVNALS+ L V
Sbjct: 62  KGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSEWLVV 119

Query: 172 TVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           T+ R   I+ Q+F  G +P++ LEK  K +   GT + F+PD  IF     ++   L + 
Sbjct: 120 TIKRDGNIYEQRFENGGVPVTTLEKIGKTKE-SGTTMHFKPDTTIFSTTN-YNYETLCER 177

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  A+L   +K     ++   E       + F++  G++ ++    E +  I   +   
Sbjct: 178 LRESAFLLKGMKISIKDERNDLE-------DVFHYETGIEAFVSYLNEEKDSIHPVV-YF 229

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL- 348
             E+ G      E A  + +     I S+ N + T +GGTHE+G + A+TR   +YA   
Sbjct: 230 TGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRVFNEYARKV 286

Query: 349 -TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFD 405
               ++  ++   D+      I+SV + E   +F GQTK KL + +A+ +++  + +   
Sbjct: 287 SLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSIDAIVSEHLA 346

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKLADCSQNIAH 462
           ++L +NP  AT L+   I+ ++ R   RK RE  R    +K     L GKL         
Sbjct: 347 YFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKLTPAQSRNPQ 406

Query: 463 GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
             EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I  ++ A+G 
Sbjct: 407 KNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIYAIGG 466

Query: 523 RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI 582
              +++  ED+ Y+KV+IMTDAD DGAHI  LLLTFFY+ M  LIE   +F+  PPL+++
Sbjct: 467 GVGNEFDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVFIALPPLYKV 526

Query: 583 TQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           ++G        YA  ++   ++ ++  K       + R+KGLGEM A QL ET M+   R
Sbjct: 527 SKGKGKSEVIEYAWSDDELDEVTKKVGK----GYMLQRYKGLGEMNADQLWETTMNPETR 582

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           TL+RV+I+         +  +  LMG K + R K+I+    F
Sbjct: 583 TLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIERNVQF 620


>gi|306817507|ref|ZP_07451251.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus mulieris
           ATCC 35239]
 gi|304649731|gb|EFM47012.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus mulieris
           ATCC 35239]
          Length = 671

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 251/676 (37%), Positives = 357/676 (52%), Gaps = 38/676 (5%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +   ++YDA+ I +LEGLE VR+RPGMYIG T E+ LHHL  EV+DN++DE +AGY + I
Sbjct: 5   EKPEEHYDAADITVLEGLEAVRVRPGMYIGSTGERGLHHLVYEVVDNSVDEALAGYCDHI 64

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           EV+L  +G + V DNGRGIPV  HP   ++ T+E+++T LHAGGKF  S+Y +SGGLHGV
Sbjct: 65  EVTLQADGSVKVCDNGRGIPVAEHP-TEHRPTVEVVMTILHAGGKFGGSSYAVSGGLHGV 123

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           GISVVNALS ++  TV R    +  +F  G  ++   ++ K   + GT   F PDP IF 
Sbjct: 124 GISVVNALSTKVLTTVKRDGYEWHVEFGNGGQVTKPLERGKETTETGTEQIFYPDPAIFE 183

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP----------------EKE 261
               FD   L    Q  A+L+  ++   + ++      G                     
Sbjct: 184 T-VEFDYETLRTRFQQMAFLNKGLRITITDERPNVTDEGDFVTGDADADADSPKVGHRHV 242

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            + +  GL  Y++     +            E        +E A+ W       I +Y N
Sbjct: 243 SYCYENGLHDYVRFINSTKKSEVVHPEVIDFEATQDDSMALEIALQWTGAYSESIYTYAN 302

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
           TI T EGGTHE G R ALT  + KYA        +  ++  DD       ++SV +R P+
Sbjct: 303 TINTTEGGTHEEGFRSALTSLMNKYARSLGVLKDKDENLSGDDCREGLTAVISVKLRTPQ 362

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE- 437
           F GQTKTKL + +A+  V+  +      +   +P EA  +L         R   RK R+ 
Sbjct: 363 FEGQTKTKLGNTEARTFVQQTVYSQLGDWFDAHPTEAKAILLKAQSAQIARNAARKARDA 422

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
             RKTA+    +PGKL DCS   A   E+FIVEGDSAGGSA   R+ ++QA+LPLRGKIL
Sbjct: 423 TRRKTALDSFSMPGKLRDCSSRDASQCEIFIVEGDSAGGSAVAGRDPAHQAILPLRGKIL 482

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557
           NV  A  +K  +N++I  L+ A G      +    LRY K+++M DADVDG HI +LLLT
Sbjct: 483 NVEKARLDKALDNKEIQALITAFGTGIGEDFDLGKLRYYKIVLMADADVDGQHITTLLLT 542

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILE-------EFKKHGK 609
             ++ M  LIE+ H+FL +PPL+R+    +   + + ++ K+K+L+          K G 
Sbjct: 543 LLFRYMKPLIEEGHVFLATPPLYRLKWSNRPHQFVYSDKEKEKLLDVGLEGGARLPKEGG 602

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669
               I R+KGLGEM   +L ET MD   R L +V +++         ++   LMG     
Sbjct: 603 ----IQRYKGLGEMDPKELWETTMDPQVRLLKQVTMDE----AASADETFALLMGEDVAS 654

Query: 670 RFKFIQERASFIDDVG 685
           R  FIQ  A  +  + 
Sbjct: 655 RRSFIQRNAQDVRFLD 670


>gi|307699824|ref|ZP_07636875.1| DNA gyrase, B subunit [Mobiluncus mulieris FB024-16]
 gi|307614862|gb|EFN94080.1| DNA gyrase, B subunit [Mobiluncus mulieris FB024-16]
          Length = 671

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 250/676 (36%), Positives = 356/676 (52%), Gaps = 38/676 (5%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +   ++YDA+ I +LEGLE VR+RPGMYIG T E+ LHHL  EV+DN++DE +AGY + I
Sbjct: 5   EKPEEHYDAADITVLEGLEAVRVRPGMYIGSTGERGLHHLVYEVVDNSVDEALAGYCDHI 64

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           EV+L  +G + V DNGRGIPV  HP   ++ T+E+++T LHAGGKF  S+Y +SGGLHGV
Sbjct: 65  EVTLQADGSVKVCDNGRGIPVAEHP-TEHRPTVEVVMTILHAGGKFGGSSYAVSGGLHGV 123

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           GISVVNALS ++  TV R    +  +F  G  ++   ++ K   + GT   F PDP IF 
Sbjct: 124 GISVVNALSTKVLTTVKRDGYEWHVEFGNGGQVTKPLERGKETTETGTEQIFYPDPAIFE 183

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK----------------EIAEKYGIPEKE 261
               FD   L    Q  A+L+  ++   + ++                +           
Sbjct: 184 T-VEFDYETLRTRFQQMAFLNKGLRITITDERPNVTDEGDFVTGDADVDADSPKIGHRHV 242

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            + +  GL  Y+      +            E        +E A+ W       I +Y N
Sbjct: 243 SYCYENGLHDYVSFINSTKKSEVVHPEVIDFEATQDDSMALEIALQWTGAYSESIYTYAN 302

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
           TI T EGGTHE G R ALT  + KYA        +  ++  DD       ++SV +R P+
Sbjct: 303 TINTTEGGTHEEGFRSALTSLMNKYARSLGVLKDKDENLSGDDCREGLTAVISVKLRTPQ 362

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE- 437
           F GQTKTKL + +A+  V+  +      +   +P EA  +L         R   RK R+ 
Sbjct: 363 FEGQTKTKLGNTEARTFVQQTVYSQLGDWFDAHPTEAKAILLKAQSAQIARNAARKARDA 422

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
             RKTA+    +PGKL DCS   A   E+FIVEGDSAGGSA   R+ ++QA+LPLRGKIL
Sbjct: 423 TRRKTALDSFSMPGKLRDCSSRDASQCEIFIVEGDSAGGSAVAGRDPAHQAILPLRGKIL 482

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557
           NV  A  +K  +N++I  L+ A G      +    LRY K+++M DADVDG HI +LLLT
Sbjct: 483 NVEKARLDKALDNKEIQALITAFGTGIGEDFDLGKLRYYKIVLMADADVDGQHITTLLLT 542

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILE-------EFKKHGK 609
             ++ M  LIE+ H+FL +PPL+R+    +   + + ++ K+K+L+          K G 
Sbjct: 543 LLFRYMKPLIEEGHVFLATPPLYRLKWSNRPHQFVYSDKEKEKLLDVGLEGGARLPKEGG 602

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669
               I R+KGLGEM   +L ET MD   R L +V +++         ++   LMG     
Sbjct: 603 ----IQRYKGLGEMDPKELWETTMDPQVRLLKQVTMDE----AASADETFALLMGEDVAS 654

Query: 670 RFKFIQERASFIDDVG 685
           R  FIQ  A  +  + 
Sbjct: 655 RRSFIQRNAQDVRFLD 670


>gi|104773262|ref|YP_618242.1| DNA gyrase, subunit B [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|103422343|emb|CAI96851.1| DNA gyrase, subunit B [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
          Length = 653

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 253/660 (38%), Positives = 370/660 (56%), Gaps = 20/660 (3%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
             A   +  +D Y+AS I++L GLE VR RPGMYIG T  + LHHL  E+IDN +DE +A
Sbjct: 9   KKAKQFEQEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNGIDEALA 68

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+A  IEV+++ +  +TV D+GRGIPV+   K   +  +E + T LHAGGKF    Y++S
Sbjct: 69  GFATKIEVTVNEDNSVTVQDDGRGIPVDI-EKKTGRPAVETVYTVLHAGGKFGGGGYKVS 127

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFR 210
           GGLHGVG SVVNALS +L+VTV R    +   F  G  +  L++   V   + GT + F 
Sbjct: 128 GGLHGVGASVVNALSTKLNVTVMRDGKKYYIAFDHGRVVEELKEVGTVPLTEHGTIVHFW 187

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PDP IF +   FD   L    +  A+L+  +K  ++  +         E   ++F GG+K
Sbjct: 188 PDPNIFTETTVFDDKILKNRIRELAFLNKGLKLTFTDKR-----NDTAETYVYHFEGGIK 242

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            Y+      + ++  E    + + +G     VE ++ +       + ++ N I T EGG 
Sbjct: 243 EYVSFLNRGQEVLFDEPIYVEGKYEGI---DVEVSLQYTTGYKTTLMTFANNIHTYEGGM 299

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           HE+G + ALTR I  YA   +   +   ++  +D+      ++SV    P+F GQTKTKL
Sbjct: 300 HEAGFKTALTRVINDYAHKAKILKENDDNLSGEDIREGMTAVISVKHPSPQFEGQTKTKL 359

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRK 446
            + DA+  V+ A  + F  +L++NP  A K++E   +        +R +    +K+ +  
Sbjct: 360 GNSDARTAVDRAFSETFSTFLMENPQVARKIVEKGQLAERARVAAKRAREVTRKKSGLEI 419

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLAD + N  + +ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++
Sbjct: 420 ANLPGKLADNTSNDPNISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDR 479

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           I  NQ+I  L  ALG    + +     RY K+IIMTDADVDGAHI +LLLT FY+ M  +
Sbjct: 480 ILANQEIRTLFTALGAGFGADFDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPM 539

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           I++ ++++  PPL+++ QG    Y   +E     L   +     K  + R+KGLGEM A 
Sbjct: 540 IDKGYVYIARPPLYQVRQGKLIKYLDTDEELHDYLGSLQPS--PKPIVQRYKGLGEMDAE 597

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           QL ET MD   R L RV    D    KD  +    LMG +   R KFI++ A +++++  
Sbjct: 598 QLWETTMDPENRRLDRV----DPEYAKDADEVFEMLMGNEVGPRRKFIEDNAQYVENLDA 653


>gi|222479425|ref|YP_002565662.1| DNA gyrase, B subunit [Halorubrum lacusprofundi ATCC 49239]
 gi|222452327|gb|ACM56592.1| DNA gyrase, B subunit [Halorubrum lacusprofundi ATCC 49239]
          Length = 645

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 252/651 (38%), Positives = 368/651 (56%), Gaps = 18/651 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y A  I++LEGL+ VR RP MYIG TD + LHHL  EV+DN++DE +AGY + I V++
Sbjct: 5   SEYGAGQIQVLEGLQAVRKRPAMYIGSTDGRGLHHLVYEVVDNSIDEALAGYCDDITVTI 64

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  ++V D+GRGIPV+ H K+ ++  LE+I+T LHAGGKFD+ +Y++SGGLHGVG+SV
Sbjct: 65  HDDNSVSVSDDGRGIPVDIHEKY-DRPALEVIMTILHAGGKFDSKSYQVSGGLHGVGVSV 123

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE---KVRNKRGTRITFRPDPKIFGD 218
           VNALS+ L V V R   ++  +F+RG P     ++        + GT I F PD +IF  
Sbjct: 124 VNALSERLEVEVKRDGGVYRHEFARGEPAEDGFERVRDLNDDEETGTYIRFWPDEEIFET 183

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+ + L    +  A+L+  V      +++        ++E F + GG++ ++    E
Sbjct: 184 -TAFEFSTLASRLRELAFLNSGVAVTLIDERDEEGVDDAGDEETFRYEGGIREFVGYLNE 242

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHESGLRVA 337
            R+ I  E+   + E    H   VE A+   EE    + ++ N I T EGGTH +G + A
Sbjct: 243 ARTPIHDEVIYFEDEDDDIH---VEVAMQATEELQGSVHAFANNINTREGGTHLTGFKTA 299

Query: 338 LTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  YA           ++  +D+      ++SV   +P+F GQTKTKL + + +  
Sbjct: 300 LTRTVNDYANTHGLVDDLEANLKGEDVREGLTAVISVKHPDPQFEGQTKTKLGNSEVRGI 359

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454
           VE+A  D    +  +NP  A K++    E +  R   +K  E   RK+A+    LPGKLA
Sbjct: 360 VESATHDKLGTFFEENPDTARKVVHKAAEAARARKAAKKAEELTRRKSALESTALPGKLA 419

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC        ELF+VEGDSAGGSAKQ RNR NQA+LPL+GKILNV     ++I  N +I 
Sbjct: 420 DCQTRDPEEAELFVVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKHRLDRILENDEIR 479

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            L+ A+G     ++  +D+RY K+IIMTDADVDGAHI +LLLT  Y+ M  L+E  +++ 
Sbjct: 480 ALITAIGAGIGEEFDIDDVRYNKIIIMTDADVDGAHIRTLLLTLLYRHMKPLLEAGYVYA 539

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL+R+    ++  A  E  + +I+ E         ++ RFKGLGEM   QL +T MD
Sbjct: 540 AQPPLYRVRYRGETYDAMTEAERDRIVAEECDGNPA--QVQRFKGLGEMNPDQLWDTTMD 597

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              R L R+ I+             N LMG   + R +FI+E A+  + V 
Sbjct: 598 PENRRLKRINIDD----AAAADRMFNVLMGDAVEPRKQFIKEHATEAEWVD 644


>gi|209559258|ref|YP_002285730.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes NZ131]
 gi|209540459|gb|ACI61035.1| Topoisomerase IV subunit B [Streptococcus pyogenes NZ131]
          Length = 649

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 243/653 (37%), Positives = 373/653 (57%), Gaps = 34/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V +
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G ++V D+GRG+P   H       T+++I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSVSVADSGRGMPTGQH--AMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R  +++ Q+F   G P++ L+K     ++K GT +TF PD KIF   
Sbjct: 127 VNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   VK   +  +        P  EEF++  G++ +++   E+
Sbjct: 186 IDFKFNTISERLKESAFLLKNVKMSLTDLRGDD-----PIIEEFHYENGVQDFVEYLNED 240

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++  I+    ++       VE A+ + +   +   S+ N + T +GG+HE+GL+ A+
Sbjct: 241 KETLTPVIYMEGQDQD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 296

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ + E   +F GQTK KL S  A+ 
Sbjct: 297 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 356

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            VE+ + +    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 357 IVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 416

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL       A   EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N+
Sbjct: 417 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 476

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  +V  +G    + +  ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 477 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 536

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     K  YA  +   + +  EF K       + R+KGLGEM A+Q
Sbjct: 537 VYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI----LQRYKGLGEMNANQ 592

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET MD   RTL+RV I+     L   +  ++ LMG KA  R ++I++   F
Sbjct: 593 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 641


>gi|67459380|ref|YP_247004.1| DNA topoisomerase IV subunit B [Rickettsia felis URRWXCal2]
 gi|75536199|sp|Q4UKT4|PARE_RICFE RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|67004913|gb|AAY61839.1| DNA topoisomerase IV, B subunit [Rickettsia felis URRWXCal2]
          Length = 662

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 335/660 (50%), Positives = 449/660 (68%), Gaps = 12/660 (1%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +    N+   +NY A  I +LEGLEPVR RPGMYIGGTD  A+HHL SEV+DNAMDE +A
Sbjct: 8   NKEKKNKLVDNNYSAKDIEVLEGLEPVRKRPGMYIGGTDSNAMHHLVSEVLDNAMDEAVA 67

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+A++I + +  +  +T+ DNGRGIP++NHPKFP+KS LE+ILTTLH+GGKF N+ Y  +
Sbjct: 68  GFASIITIKMHQDHSITIFDNGRGIPIDNHPKFPDKSALEVILTTLHSGGKFSNNVYHTA 127

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVGISVVNALS  L + V +Q  ++SQ +S+G  L+ L  +E  +  RGT I F P
Sbjct: 128 GGLHGVGISVVNALSKHLEIKVYKQGKLYSQSYSKGEKLTDLICEEASKRLRGTSINFTP 187

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           DP+IF +K  F+  ++ ++ +SKAYL   V   W C+ E+     IP+K    FP GLK 
Sbjct: 188 DPEIFSEKLHFNPKKIYELARSKAYLYRGVTIEWECEVEVP--SDIPKKALINFPNGLKD 245

Query: 272 YLQTKLENRSLISSEIFTGKTEK-KGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330
           YL +K+   +LI  EIF+G  E      +          + +  I SYCNT+ T +GGTH
Sbjct: 246 YLSSKITLDNLIIPEIFSGNIESTPDEIKLEWAICWQNNDNSAFIQSYCNTVPTPQGGTH 305

Query: 331 ESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           E GL+ A+ RG+K Y E+  NK+A ++  +D++ +A  +LS+FI EP F GQTK KLVS 
Sbjct: 306 EQGLKSAILRGLKAYGEMIGNKKAANLTIEDILETASVVLSIFIAEPSFQGQTKEKLVSN 365

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
              + VEN ++D FDH+L  +   AT LLE VI  +E R+ ++ ++ ++RK A +KLRLP
Sbjct: 366 GVSKPVENIIKDHFDHFLSSDKALATNLLEHVIAIAEFRISKKNEKNISRKNATQKLRLP 425

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC++    GTELFIVEGDSAGGSAKQARNR  QAVLPL GK+LNVAS+  EKI NN
Sbjct: 426 GKLADCTRTTPGGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSTLEKIVNN 485

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           Q I DL  AL C +   Y+EE+LRYEK+IIMTDADVDGAHIASLL+TFF+  M  L+E+ 
Sbjct: 486 QAIQDLEIALACGSLKNYKEENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEEG 545

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           HL+L  PPL+R+TQ  K+ YA DEE K K+ ++  K  K KIE+ RFKGLGEM+ +QLKE
Sbjct: 546 HLYLAKPPLYRLTQSNKTYYAGDEEEKAKLTDKLSKASKAKIEVGRFKGLGEMMPAQLKE 605

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA-----SFIDDVG 685
           T M   KR+LL+V +       ++    ++ LMG K ++RF+FI E+A       I+++ 
Sbjct: 606 TTMHPEKRSLLKVTLED----FQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIINELD 661


>gi|21910160|ref|NP_664428.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS315]
 gi|21904353|gb|AAM79231.1| putative DNA topoisomerase IV subunit B [Streptococcus pyogenes
           MGAS315]
          Length = 650

 Score =  586 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 242/653 (37%), Positives = 373/653 (57%), Gaps = 34/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V +
Sbjct: 10  NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G ++V D+GRG+P   H       T+++I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 70  NKDGSVSVADSGRGMPTGQH--AMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 127

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R  +++ Q+F   G P++ L+K     ++K GT +TF PD KIF   
Sbjct: 128 VNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFST- 186

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   VK   +  +        P  EEF++  G++ +++   E+
Sbjct: 187 IDFKFNTISERLKESAFLLKNVKMSLTDLRGDD-----PIIEEFHYENGVQDFVEYLNED 241

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++  I+    ++       VE A+ + +   +   S+ N + T +GG+HE+GL+ A+
Sbjct: 242 KETLTPVIYMEGQDQD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ + E   +F GQTK KL S  A+ 
Sbjct: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 357

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V++ + +    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 358 IVDSIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 417

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL       A   EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N+
Sbjct: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  +V  +G    + +  ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 478 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 537

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     K  YA  +   + +  EF K       + R+KGLGEM A+Q
Sbjct: 538 VYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI----LQRYKGLGEMNANQ 593

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET MD   RTL+RV I+     L   +  ++ LMG KA  R ++I++   F
Sbjct: 594 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 642


>gi|291297295|ref|YP_003508693.1| DNA topoisomerase (ATP-hydrolyzing) [Meiothermus ruber DSM 1279]
 gi|290472254|gb|ADD29673.1| DNA topoisomerase (ATP-hydrolyzing) [Meiothermus ruber DSM 1279]
          Length = 643

 Score =  586 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 268/656 (40%), Positives = 371/656 (56%), Gaps = 29/656 (4%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           +   + +YDAS+I++L+GLE VR RP MYIGGT     HHLF E++DNA+DE +AG+A  
Sbjct: 2   STDLTTSYDASAIKVLKGLEGVRHRPAMYIGGTQADGYHHLFKEILDNAVDEALAGFATE 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I  +L  +G +TV DNGRGIPV+  P+   K  +E+I T LHAGGKF+   Y++SGGLHG
Sbjct: 62  IVTTLHPDGSITVEDNGRGIPVDIMPE-EQKPAVEVIYTVLHAGGKFEEGAYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKI 215
           VG SVVNALS+   V V R       +FSRG    PL+   +  + KRGTR+TF PDP+I
Sbjct: 121 VGASVVNALSEFTRVEVFRDGKHHLIEFSRGEVTRPLQVVGEAPKGKRGTRVTFLPDPQI 180

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           FG +  F+A+RL    +  ++L   +K  +  +    E       E F+  GG+ ++ + 
Sbjct: 181 FGSEQKFEASRLRVRLREVSFLVAGLKLVFKDEIHQKE-------EVFFDKGGVASFAKF 233

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGL 334
           + +   L+  +    + + +      VE  +   +       S+ N I T +GGTH SG 
Sbjct: 234 RADGEELLYDKPVLLQGQVEAV---GVEVGLVHTKGYSADLVSFANMIPTVDGGTHVSGF 290

Query: 335 RVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           + A TR I  YA+     + +    DDL+     ++SV I +P+F GQTK KL++ +A  
Sbjct: 291 KTAYTRAINTYAKKAGLVKDLEPTGDDLLEGLSCVISVKIPQPQFEGQTKGKLLNPEAGT 350

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            V   + + F  YL +NP  A  + E     ++ R   RK RE V R   +    LPGKL
Sbjct: 351 AVSRVVYEKFSEYLEENPRIAKMIYEKAQRAAQAREAARKARELVRRANPLESDDLPGKL 410

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC        ELFIVEGDSAGGSAK  R+R  QA+LPLRGKILNV  AG  K   N ++
Sbjct: 411 ADCQSEDPAEAELFIVEGDSAGGSAKSGRDRRFQAILPLRGKILNVEKAGLNKALKNAEV 470

Query: 514 MDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             +V A+G          + +  EDLRY K+IIMTDADVDG+HI +LLLTFFY+ M  +I
Sbjct: 471 RAMVAAIGAGIGGKDNEEAHFNIEDLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPII 530

Query: 568 EQKHLFLISPPLF--RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           E+ +L++  PPL+  R+ +  +  Y  D+E  +K L      G    EI RFKGLGEM A
Sbjct: 531 ERGYLYVAQPPLYGLRVGKSKQMEYIFDDEALKKALANI---GDKPYEIQRFKGLGEMNA 587

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
            QL ET MD  +R L +V    D+          + LMG+    R +FI+E A F 
Sbjct: 588 EQLWETTMDPARRVLKKV----DMKDASYAAQIFDDLMGSDVQPRREFIEENARFA 639


>gi|325685102|gb|EGD27233.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 653

 Score =  586 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 253/660 (38%), Positives = 373/660 (56%), Gaps = 20/660 (3%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
             A   +  +D Y+AS I++L GLE VR RPGMYIG T  + LHHL  E+IDN +DE +A
Sbjct: 9   KKAKQFEQEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNGIDEALA 68

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+A  IEV+++ +  +TV D+GRGIPV+   K   +  +E + T LHAGGKF    Y++S
Sbjct: 69  GFATKIEVTVNEDNSVTVQDDGRGIPVDI-EKKTGRPAVETVYTVLHAGGKFGGGGYKVS 127

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFR 210
           GGLHGVG SVVNALS +L+VTV R    +   F  G  +  L++   V   + GT + F 
Sbjct: 128 GGLHGVGASVVNALSTKLNVTVMRDGKKYHIAFDHGRVVEELKEVGTVPLTEHGTIVHFW 187

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PDP IF +   FD   L    +  A+L+  +K  ++  ++        E + ++F GG+K
Sbjct: 188 PDPNIFTETTVFDDKILKNRIRELAFLNKGLKLTFTDKRKD-----TAETDVYHFEGGIK 242

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            Y+      + ++  E    + + +G     VE ++ +       + ++ N I T EGG 
Sbjct: 243 EYVSFLNRGQEVLFDEPIYVEGKYEGI---DVEVSLQYTTGYKTTLMTFANNIHTYEGGM 299

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           HE+G + ALTR +  YA   +   +   ++  +D+      ++SV    P+F GQTKTKL
Sbjct: 300 HEAGFKTALTRVVNDYAHKAKILKENDDNLSGEDIREGMTAVISVKHPNPQFEGQTKTKL 359

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRK 446
            + DA+  V+ A  + F  +L++NP  A K++E   +        +R +    +K+ +  
Sbjct: 360 GNSDARTAVDRAFSETFSTFLMENPQVARKIVEKGQLAERARVAAKRAREVTRKKSGLEI 419

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLAD + N  + +ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++
Sbjct: 420 ANLPGKLADNTSNDPNISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDR 479

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           I  NQ+I  L  ALG    + +     RY K+IIMTDADVDGAHI +LLLT FY+ M  +
Sbjct: 480 ILANQEIRTLFTALGTGFGADFDISKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPM 539

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           I++ ++++  PPL+++ QG    Y   +E     L   +     K  + R+KGLGEM A 
Sbjct: 540 IDKGYVYIARPPLYQVRQGKLIKYLDTDEELHDYLGSLQPS--PKPIVQRYKGLGEMDAE 597

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           QL ET MD   R L RV    D    KD  +    LMG +   R KFI++ A +++++ T
Sbjct: 598 QLWETTMDPENRRLDRV----DPEYAKDADEVFEMLMGNEVGPRRKFIEDNAQYVENLDT 653


>gi|313126396|ref|YP_004036666.1| DNA gyrase subunit b [Halogeometricum borinquense DSM 11551]
 gi|312292761|gb|ADQ67221.1| DNA gyrase subunit B [Halogeometricum borinquense DSM 11551]
          Length = 637

 Score =  586 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 251/651 (38%), Positives = 371/651 (56%), Gaps = 24/651 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
              Y A  I++LEGLE VR RP MYIG TD + LHHL  EV+DN++DE +AGY + I VS
Sbjct: 4   ESEYGAGQIQVLEGLEAVRKRPAMYIGSTDSRGLHHLVYEVVDNSIDEALAGYCDEIGVS 63

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +G ++V DNGRGIPV+ H ++ ++  +E+I+T LHAGGKFDN +Y++SGGLHGVG+S
Sbjct: 64  VHEDGSVSVTDNGRGIPVDTHEQY-DRPAVEVIMTVLHAGGKFDNKSYQVSGGLHGVGVS 122

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE---KVRNKRGTRITFRPDPKIFG 217
           VVNALS+ L V + R   ++  +F +G P     ++    +     GT I F+PD  IF 
Sbjct: 123 VVNALSEWLEVEIKRDGALWRHRFDQGEPDQEAFERVRDLESDEDTGTTIRFKPDGDIFE 182

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               FD   L    +  A+L+  V+   + D          E+  FYF GG++ +++   
Sbjct: 183 T-LEFDFTTLENRLRELAFLNSGVEISLADD-------DADEQSSFYFEGGIREFVRYLN 234

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHESGLRV 336
           E +S +  ++     E +G     VE A+   EE    I ++ N I T EGGTH +G + 
Sbjct: 235 ETKSTLHDDVIYYDDEDEGI---EVEVAMQATEELQGSIHAFANNINTREGGTHLTGFKT 291

Query: 337 ALTRGIKKYAELTQNKRAISI-ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           ALTR +  YA        +     +D+      ++S+   +P+F GQTKTKL + + +  
Sbjct: 292 ALTRVVNDYARSNNLLDDLDSLKGEDIREGLTAVISIKHPDPQFEGQTKTKLGNSEVRGI 351

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454
           VE+   +    Y  +NP  A  ++   +E ++ R   +K  E   RK+A+    LPGKLA
Sbjct: 352 VESVTHEQLGTYFEENPGTAQAIVMKAVEAAKARRAAKKAEELTRRKSALESTALPGKLA 411

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC       +ELF+VEGDSAGGSAKQ R+R  QA+LP++GKILNV     ++I  N ++ 
Sbjct: 412 DCQSRDPSESELFVVEGDSAGGSAKQGRDRKFQAILPIKGKILNVEKHRLDRILENNEVR 471

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            L+ A+G     ++  +D+RYE++I+MTDADVDGAHI +LLLT  Y+ M  LIE  +++ 
Sbjct: 472 ALITAIGAGIGEEFDIDDVRYERIILMTDADVDGAHIRTLLLTLLYRHMRPLIEAGYVYA 531

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL+R+    ++  A  EE + +I+EE  K      ++ RFKGLGEM   QL +T M+
Sbjct: 532 AQPPLYRVRYRGETYDAMTEEERDRIVEE--KCDGNPTQVQRFKGLGEMNPEQLWDTTMN 589

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            + R L R+ I              N LMG   + R +FI+E A+  + V 
Sbjct: 590 PDNRVLKRINIED----AAAADRMFNVLMGDAVEPRKQFIKEHATEAEWVD 636


>gi|15892232|ref|NP_359946.1| DNA topoisomerase IV subunit B [Rickettsia conorii str. Malish 7]
 gi|81528439|sp|Q92IW1|PARE_RICCN RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|15619368|gb|AAL02847.1| DNA gyrase subunit B [Rickettsia conorii str. Malish 7]
          Length = 662

 Score =  586 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 338/661 (51%), Positives = 456/661 (68%), Gaps = 14/661 (2%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +    N+   +NY A  I +LEGLEPVR RPGMYIGGTD  A+HHL SEV+DNAMDE +A
Sbjct: 8   NKEKKNKLVDNNYSAKDIEVLEGLEPVRKRPGMYIGGTDSNAMHHLVSEVLDNAMDEAVA 67

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+A++I +++  +  +T+ DNGRGIP++NHPKFP+KS LE+ILTTLH+GGKF N+ Y  +
Sbjct: 68  GFASIITITMHHDHSITIFDNGRGIPIDNHPKFPDKSALEVILTTLHSGGKFSNNVYHTA 127

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVGISVVNALS  L + V +Q  ++SQ +S+G  L+ L  +E  +  RGT I F P
Sbjct: 128 GGLHGVGISVVNALSKHLEIKVYKQGKLYSQSYSKGEKLTDLICEEASKRLRGTSINFTP 187

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           DP+IF +K  F+  ++ ++ +SKAYL   V   W+C+ E+  +  IP+K    FP GLK 
Sbjct: 188 DPEIFSEKLHFNPKKIYELARSKAYLYRGVTIEWACEVEV--QSDIPKKALISFPNGLKD 245

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT--SYCNTILTDEGGT 329
           YL +K+   +L+   IF G  E K + R  +EWAI W   +      SYCNT+ T +GGT
Sbjct: 246 YLSSKITLDNLVIPGIFAGNIESK-SDRIKLEWAICWQNNDSSAFVQSYCNTVPTPQGGT 304

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           HE GL+ A+ RG+K Y E+  NK+A ++  +D++ +A  +LS+FI EP F GQTK KLVS
Sbjct: 305 HEQGLKSAILRGLKAYGEMIGNKKAANLTIEDILETASVVLSIFIAEPSFQGQTKEKLVS 364

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
               + VEN ++D FDH+L  +   AT LLE VI  +E R+ ++ ++ ++RK A +KLRL
Sbjct: 365 NGVSKPVENIIKDHFDHFLSSDKALATNLLEHVISIAEFRISKKNEKNISRKNATQKLRL 424

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC++    GTELFIVEGDSAGGSAKQARNR  QAVLPL GK+LNVAS+  EKI N
Sbjct: 425 PGKLADCTRTSPEGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSTLEKIVN 484

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           NQ I DL  AL C +   Y++E+LRYEK+IIMTDADVDGAHIASLL+TFF+  M  L+E+
Sbjct: 485 NQAIQDLEIALACGSLKNYKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEE 544

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
            HL+L  PPL+R+TQ  K+ YA DEE K K++++  K  K KIE+ RFKGLGEM+ +QLK
Sbjct: 545 GHLYLAKPPLYRLTQSNKTYYAGDEEEKAKLMDKLLKASKAKIEVGRFKGLGEMMPAQLK 604

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA-----SFIDDV 684
           ET M   KR+LL+V +       ++    ++ LMG K ++RF+FI E+A       I ++
Sbjct: 605 ETTMHPEKRSLLKVTL----ADFQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIISEL 660

Query: 685 G 685
            
Sbjct: 661 D 661


>gi|225868765|ref|YP_002744713.1| DNA gyrase subunit B [Streptococcus equi subsp. zooepidemicus]
 gi|225870279|ref|YP_002746226.1| DNA gyrase subunit B [Streptococcus equi subsp. equi 4047]
 gi|225699683|emb|CAW93393.1| DNA gyrase subunit B [Streptococcus equi subsp. equi 4047]
 gi|225702041|emb|CAW99644.1| DNA gyrase subunit B [Streptococcus equi subsp. zooepidemicus]
          Length = 650

 Score =  586 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 254/652 (38%), Positives = 372/652 (57%), Gaps = 24/652 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +  +  YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I
Sbjct: 9   EDKAQEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHI 68

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +  +TV+D+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGV
Sbjct: 69  QVFIEADNSITVIDDGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS +L V V +   I  Q+F RG  +  L           T + F PDP+IF 
Sbjct: 128 GSSVVNALSTQLDVRVYKNGHIHYQEFRRGAVVDDLAIIGTTDVTG-TTVHFTPDPEIFT 186

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   FD   L K  Q  A+L+  +K   +  +   E+      E F++ GG+ +Y+    
Sbjct: 187 ETTEFDYQVLAKRIQELAFLNRGLKISITDKRAGLERE-----EHFHYEGGIGSYVAFLN 241

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           + + +I         E +G    TVE A+ +       + S+ N I T EGGTHE G R 
Sbjct: 242 DKKDVIFDTPIYSDGELEGI---TVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRT 298

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA+  +   +   ++  +D+      ++SV    P+F GQTKTKL + +  +
Sbjct: 299 ALTRVINDYAKKAKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
                  +    +L++NP  A K++E  I  S+ R+  ++ RE   +K+ +    LPGKL
Sbjct: 359 ITNRLFSEALQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS N A   ELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I
Sbjct: 419 ADCSSNDASQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 478

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             L  A+G    +++     RY+K++IMTDADVDGAHI +LLLT  Y+ M  ++E  +++
Sbjct: 479 RSLFTAMGTGFGAEFDVSRARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVY 538

Query: 574 LISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           +  PP++ +  G++   Y       EE  +  LE     G+ +  I R+KGLGEM   QL
Sbjct: 539 IAQPPIYGVKVGSEIKEYIQPGVNQEEELKAALER-HSTGRSRPTIQRYKGLGEMDDHQL 597

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET MD + R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 598 WETTMDPDNRLMARVTVDD----AAEADRIFDMLMGDRVEPRREFIEENAVY 645


>gi|289167707|ref|YP_003445976.1| DNA gyrase, B subunit [Streptococcus mitis B6]
 gi|288907274|emb|CBJ22109.1| DNA gyrase, B subunit [Streptococcus mitis B6]
          Length = 648

 Score =  586 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 252/648 (38%), Positives = 373/648 (57%), Gaps = 22/648 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ IEV 
Sbjct: 10  AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIEVF 69

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGVG S
Sbjct: 70  IEPDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 128

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L V V +   I  Q++ RG  ++ LE      +K GT + F PDP+IF +  
Sbjct: 129 VVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DKTGTTVHFTPDPEIFTETT 187

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD  +L K  Q  A+L+  ++   +  +E  E     + + +++ GG+ +Y++   EN+
Sbjct: 188 TFDFDKLNKRIQELAFLNRGLQISITDKREGLE-----QTKHYHYEGGIASYVEYINENK 242

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
            +I         E        VE A+ +     E   S+ N I T EGGTHE G R ALT
Sbjct: 243 DVIFDTPIYTDGEMDDI---AVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALT 299

Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA   +  +    ++  +D+      ++SV    P+F GQTKTKL + +  +   
Sbjct: 300 RVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKISN 359

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
               D F  +L++NP  A +++E  ++        +R +    +K+ +    LPGKLADC
Sbjct: 360 RLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADC 419

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I  L
Sbjct: 420 SSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 479

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    +++     RY+K+++MTDADVDGAHI +LLLT  Y+ M  ++E  ++++  
Sbjct: 480 FTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQ 539

Query: 577 PPLFRITQGTKSV-YAHDEEHKQKILEEF---KKHGKGKIEISRFKGLGEMLASQLKETA 632
           PP++ +  G++   Y      ++  L+E       G+ K  I R+KGLGEM   QL ET 
Sbjct: 540 PPIYGVKVGSEIKEYIQPGADQEIKLQEALARHSEGRAKPTIQRYKGLGEMDDHQLWETT 599

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           MD   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 600 MDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643


>gi|153085|gb|AAA73951.1| DNA gyrase B subunit [Staphylococcus aureus]
          Length = 640

 Score =  586 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 244/655 (37%), Positives = 374/655 (57%), Gaps = 20/655 (3%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
            A ++ + +DNY A  I++LEGLE VR RPGMYIG T  +   H+  E++DN++DE +AG
Sbjct: 3   TALSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTQRE--LHISVEIVDNSIDEALAG 60

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           YAN IEV ++ + ++ V DNGRGIPV+   K   +  +E+ILT LHAGGKF    Y++SG
Sbjct: 61  YANKIEVVIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 119

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG SVVNALS +L V V R  TI+ Q + +G+P   L++     +K GT I F+ D
Sbjct: 120 GLHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKAD 178

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            +IF +   ++   L +  +  A+L+  ++     +++         ++ +++ GG+K+Y
Sbjct: 179 GEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEE----NVREDSYHYEGGIKSY 234

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++   EN+  I  E       K       VE AI +       + +Y N I T EGGTHE
Sbjct: 235 VELLNENKEPIHDEPIYIHQSKDDI---EVEIAIQYNSGYATNLLTYANNIHTYEGGTHE 291

Query: 332 SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            G + ALTR +  Y   ++ +       +D       I+S+   +P+F GQTKTKL + +
Sbjct: 292 DGFKRALTRVLNSYGLSSRYEEEKIASGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSE 351

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLP 450
            ++ V+    + F+ +L +NP  A  ++E  ++        ++ +    RK+A+    LP
Sbjct: 352 VRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLP 411

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS       E+F+VEGDSAGGS K  R+   QA+LPLRGKILNV  A  ++I NN
Sbjct: 412 GKLADCSSQSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNN 471

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
            +I  ++ A G      +     RY K++IMTDADVDGAHI +LLL FFY+ M  LIE  
Sbjct: 472 NEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLIFFYRFMRPLIEAG 531

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPL+++TQG +  Y +++    K+  E   +   K  I+ +KGLGEM A QL E
Sbjct: 532 YVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSEL--NPTPKWSIALYKGLGEMNADQLWE 589

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T M+   R LL+V++   +    +   +   LMG   + R +FI++ A +  ++ 
Sbjct: 590 TTMNPEHRALLQVKLEDAI----EADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 639


>gi|322392250|ref|ZP_08065711.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           peroris ATCC 700780]
 gi|321144785|gb|EFX40185.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           peroris ATCC 700780]
          Length = 648

 Score =  586 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 251/652 (38%), Positives = 374/652 (57%), Gaps = 22/652 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
               + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ 
Sbjct: 6   KNQQAQDYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASH 65

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV ++ +  +TV+D+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHG
Sbjct: 66  IEVFIEPDDSITVIDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHG 124

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS +L V V +   I  Q++ RG  ++ L+      +K GT + F PDP+IF
Sbjct: 125 VGSSVVNALSTQLDVRVHKNGKIHYQEYRRGHVVADLKVIGDT-DKTGTIVHFTPDPEIF 183

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   FD  +L K  Q  A+L+  ++   +  +E  E     + + +++ GG+ +Y++  
Sbjct: 184 TETTTFDFDKLNKRIQELAFLNRGLQISITDKREGLE-----QTKHYHYEGGIASYVKYI 238

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335
            EN+ +I         E       TVE A+ +     E   S+ N I T EGGTHE G R
Sbjct: 239 NENKDVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFR 295

Query: 336 VALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR I  YA   +  +    ++  +D+      ++SV    P+F GQTKTKL + +  
Sbjct: 296 TALTRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVV 355

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
           +       D F  +L++NP  A +++E  ++        +R +    +K+ +    LPGK
Sbjct: 356 KITNRLFSDAFSDFLLENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGK 415

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++
Sbjct: 416 LADCSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEE 475

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  L  A+G    +++     RY+K++IMTDADVDGAHI +LLLT  Y+ M  ++E  ++
Sbjct: 476 IRSLFTAMGTGFGAEFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYV 535

Query: 573 FLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKK---HGKGKIEISRFKGLGEMLASQL 628
           ++  PP++ +  G++   Y      ++  L+E       G+ K  I R+KGLGEM   QL
Sbjct: 536 YIAQPPIYGVKVGSEIKEYIQPGSEQETRLQEALARYSEGRSKPTIQRYKGLGEMDDHQL 595

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET M+   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 596 WETTMNPEHRLMARVSVDD----AAEADRIFDMLMGDRVEPRREFIEENAVY 643


>gi|296167139|ref|ZP_06849546.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295897461|gb|EFG77060.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 677

 Score =  586 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 254/688 (36%), Positives = 371/688 (53%), Gaps = 49/688 (7%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A   + A D Y AS+I +LEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +AGY
Sbjct: 2   AAQKKKAQDEYGASAITVLEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNSVDEAMAGY 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF--DNSTYEIS 151
           A  ++V L  +G + VVD+GRGIPV  H       T+++++T LHAGGKF  +NS Y +S
Sbjct: 62  ATKVDVRLLDDGSVEVVDDGRGIPVAMH--ATGAPTVDVVMTQLHAGGKFGGENSGYTVS 119

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS  L VT+ R    + Q + R +P +   K+ +   K GT I F  
Sbjct: 120 GGLHGVGVSVVNALSTRLEVTIKRDGHEWFQYYDRAVPGTL--KQGEATKKTGTTIRFWA 177

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK----------------- 254
           DP+IF     +D   + +  Q  A+L+  +    + ++   ++                 
Sbjct: 178 DPEIFET-TQYDFETVARRLQEMAFLNKGLTINLTDERVEQDEVVDEVVSDTAEAPKSAE 236

Query: 255 --------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
                       +   F++PGGL  +++     +S I   +     +  G     VE A+
Sbjct: 237 EKAAESTAPHKVKHRTFHYPGGLVDFVKHINRTKSPIQQSVIDFDGKGTGH---EVEIAM 293

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLM 363
            W       + ++ NTI T EGGTHE G R ALT  + KY   +     +  ++  DD+ 
Sbjct: 294 QWNGGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLTGDDIR 353

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP EA  ++   +
Sbjct: 354 EGLAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPSEAKTVVNKAV 413

Query: 424 ERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
             ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGGSAK  R
Sbjct: 414 SSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGR 473

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           +   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY K+++M 
Sbjct: 474 DSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDITKLRYHKIVLMA 533

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKIL 601
           DADVDG HI++LLLT  ++ M  LIE  H+FL  PPL+++        +A+ +  +  +L
Sbjct: 534 DADVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRTDPEFAYSDRERDGLL 593

Query: 602 EEFKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           E   K GK KI     I R+KGLGEM A +L ET MD + R L +V ++          +
Sbjct: 594 EAGLKAGK-KINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADE 648

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
             + LMG   D R  FI   A  +  + 
Sbjct: 649 LFSILMGEDVDARRSFITRNAKDVRFLD 676


>gi|156889076|gb|ABU96689.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 641

 Score =  586 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 239/652 (36%), Positives = 367/652 (56%), Gaps = 34/652 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I V +
Sbjct: 10  NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIRVVI 69

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G ++V D+GRG+P   H       T+++I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 70  NKDGSVSVADSGRGMPTGQH--AMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 127

Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F  G  P++ L+K     ++K GT +TF PD KIF   
Sbjct: 128 VNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTI 187

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   VK   +  +        P  EEF++  G++ +++   E+
Sbjct: 188 -DFKFNTIAERLKESAFLLKNVKMSLTDLR-----GDEPIVEEFHYENGVQDFVEYLNED 241

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++  I+    +        VE A+ + +   +   S+ N + T +GG+HE+GL+ A+
Sbjct: 242 KETLTPVIYMEGQDHD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ + E   +F GQTK KL S  A+ 
Sbjct: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 357

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451
            V++ + +    +L++N   A+ L+   I+    R   RK R+ +R     K       G
Sbjct: 358 IVDSIVSEKLTFFLLENGELASNLVRKAIKARNAREAARKARDDSRNGKKNKKDKGLLSG 417

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL       A   EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N+
Sbjct: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  +V  +G    + +  ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 478 EINTMVHTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 537

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     K  YA  +   + + +EF K       + R+KGLGEM A+Q
Sbjct: 538 VYIALPPLYKMSKGKGKTEKVSYAWTDGELEDLRKEFGKGAI----LQRYKGLGEMNANQ 593

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679
           L ET MD   RTL+RV I+     L   +  ++ LMG KA  R ++I++   
Sbjct: 594 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVK 641


>gi|306827498|ref|ZP_07460781.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus pyogenes
           ATCC 10782]
 gi|304430296|gb|EFM33322.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus pyogenes
           ATCC 10782]
          Length = 650

 Score =  585 bits (1508), Expect = e-165,   Method: Composition-based stats.
 Identities = 242/653 (37%), Positives = 371/653 (56%), Gaps = 34/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V +
Sbjct: 10  NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G ++V D+GRG+P   H       T+++I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 70  NKDGSVSVADSGRGMPTGQH--AMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 127

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F   G P++ L+K     ++K GT +TF PD KIF   
Sbjct: 128 VNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFST- 186

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   VK   +  +        P  EEF++  G++ +++   E+
Sbjct: 187 IDFKFNTIAERLKESAFLLKNVKMSLTDLR-----GDEPIVEEFHYENGVQDFVEYLNED 241

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++  I+    +        VE A+ + +   +   S+ N + T +GG+HE+GL+ A+
Sbjct: 242 KETLTPVIYMEGQDHD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ + E   +F GQTK KL S  A+ 
Sbjct: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 357

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V++ + +    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 358 IVDSIVSEKLTFFLLENGELASNLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 417

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL       A   EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N+
Sbjct: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  +V  +G    + +  ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 478 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 537

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     K  YA  +   + +  EF K       + R+KGLGEM A+Q
Sbjct: 538 VYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI----LQRYKGLGEMNANQ 593

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET MD   RTL+RV I+     L   +  ++ LMG KA  R ++I++   F
Sbjct: 594 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 642


>gi|195977899|ref|YP_002123143.1| DNA gyrase subunit B [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195974604|gb|ACG62130.1| DNA gyrase subunit B GyrB [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 650

 Score =  585 bits (1508), Expect = e-165,   Method: Composition-based stats.
 Identities = 254/652 (38%), Positives = 371/652 (56%), Gaps = 24/652 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +  +  YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I
Sbjct: 9   EDKAQEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHI 68

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +  +TV+D+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGV
Sbjct: 69  QVFIEADNSITVIDDGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS +L V V +   I  Q+F RG  +  L           T + F PDP+IF 
Sbjct: 128 GSSVVNALSTQLDVRVYKNGHIHYQEFRRGAVVDDLAIIGTTDVTG-TTVHFTPDPEIFT 186

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   FD   L K  Q  A+L+  +K   +  +   E+      E F++ GG+ +Y+    
Sbjct: 187 ETTEFDYQVLAKRIQELAFLNRGLKISITDKRAGLERE-----EHFHYEGGIGSYVAFLN 241

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           + + +I         E +G    TVE A+ +       + S+ N I T EGGTHE G R 
Sbjct: 242 DKKDVIFDTPIYSDGELEGI---TVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRT 298

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA+  +   +   ++  +D+      ++SV    P+F GQTKTKL + +  +
Sbjct: 299 ALTRVINDYAKKAKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
                  +    +L++NP  A K++E  I  S+ R+  ++ RE   +K+ +    LPGKL
Sbjct: 359 ITNRLFSEALQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS N A   ELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I
Sbjct: 419 ADCSSNDASQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 478

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             L  A+G    + +     RY+K++IMTDADVDGAHI +LLLT  Y+ M  ++E  +++
Sbjct: 479 RSLFTAMGTGFGADFDVSRARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVY 538

Query: 574 LISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           +  PP++ +  G++   Y       EE  +  LE     G+ +  I R+KGLGEM   QL
Sbjct: 539 IAQPPIYGVKVGSEIKEYIQPGVNQEEELKAALER-HSTGRSRPTIQRYKGLGEMDDHQL 597

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET MD + R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 598 WETTMDPDNRLMARVTVDD----AAEADRIFDMLMGDRVEPRREFIEENAVY 645


>gi|297584211|ref|YP_003699991.1| DNA topoisomerase IV subunit B [Bacillus selenitireducens MLS10]
 gi|297142668|gb|ADH99425.1| DNA topoisomerase IV, B subunit [Bacillus selenitireducens MLS10]
          Length = 656

 Score =  585 bits (1508), Expect = e-165,   Method: Composition-based stats.
 Identities = 239/649 (36%), Positives = 358/649 (55%), Gaps = 32/649 (4%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y+  +I++LEGL+ VR RPGMYIG TD + LHHL  E++DN++DE++AG+ N I V++  
Sbjct: 8   YNDDAIQVLEGLDAVRKRPGMYIGSTDHRGLHHLVFEIVDNSVDEILAGFGNEITVTIHK 67

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +  +++ D+GRG P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVVN
Sbjct: 68  DQSVSIQDSGRGFPTGMH--RSGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVVN 125

Query: 164 ALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           ALS+ L VT+ R   I  Q+F   G P + LEK  K +   GT + F+PD  IFG    F
Sbjct: 126 ALSEWLEVTIYRDGVISQQRFENGGKPATTLEKVGKTKR-TGTTVHFKPDEAIFGS-ITF 183

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L +  +  A+L   VK     ++        PE++ F F  GL  ++    E + +
Sbjct: 184 HYDTLAERLREAAFLIKGVKIELIDER-----GDEPERDTFQFDTGLVAFVDYLNEEKDI 238

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGI 342
           +   I       +       ++   + E    + S+ N + T +GGTHE G + A+TR I
Sbjct: 239 LHPVIQFEGVHDEIEVDIAFQYNDGFTE---NMLSFVNNVRTKDGGTHELGAKAAITRII 295

Query: 343 KKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVEN 398
            ++A       ++  ++   D+     GI+SV + E   +F GQTK KL + +A+  V+ 
Sbjct: 296 NEHARKLALLKEKDKNLDGSDIREGFTGIISVRVPEEKLQFEGQTKAKLGTAEARSAVDQ 355

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG---KLAD 455
            +      +L +NP  +  L++  ++ S+ R   RK RE  R     K +      KL  
Sbjct: 356 VISGKLAFFLEENPEFSHMLIKKAVKASQAREAARKAREDARNGKKNKRKDAMLSGKLTP 415

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
                 +  EL++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I  
Sbjct: 416 AQSRNPNKNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIMKNEEIRT 475

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ A+G      +  E++ Y+K++IMTDAD DGAHI  LLLTFFY+ M  L+E   +++ 
Sbjct: 476 IIYAIGGDVGPDFDLENINYDKIVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGRIYIA 535

Query: 576 SPPLFRITQ--GTKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
            PPL+++++  G K +  YA DE   Q  +++  K       + R+KGLGEM A+QL ET
Sbjct: 536 LPPLYKVSRGSGKKEIVEYAWDENGLQGAIDQVGK----GYILQRYKGLGEMDATQLWET 591

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            M+   RTL+RV I      +   +  ++ LMG K + R K+I+   +F
Sbjct: 592 TMNPESRTLVRVTIED----VARAERHVSTLMGDKVEPRRKWIERNVAF 636


>gi|28896141|ref|NP_802491.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes SSI-1]
 gi|28811391|dbj|BAC64324.1| putative DNA topoisomerase IV, subunit B [Streptococcus pyogenes
           SSI-1]
          Length = 649

 Score =  585 bits (1508), Expect = e-165,   Method: Composition-based stats.
 Identities = 242/653 (37%), Positives = 373/653 (57%), Gaps = 34/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V +
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G ++V D+GRG+P   H       T+++I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSVSVADSGRGMPTGQH--AMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R  +++ Q+F   G P++ L+K     ++K GT +TF PD KIF   
Sbjct: 127 VNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   VK   +  +        P  EEF++  G++ +++   E+
Sbjct: 186 IDFKFNTISERLKESAFLLKNVKMSLTDLRGDD-----PIIEEFHYENGVQDFVEYLNED 240

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++  I+    ++       VE A+ + +   +   S+ N + T +GG+HE+GL+ A+
Sbjct: 241 KETLTPVIYMEGQDQD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 296

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ + E   +F GQTK KL S  A+ 
Sbjct: 297 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 356

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V++ + +    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 357 IVDSIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 416

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL       A   EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N+
Sbjct: 417 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 476

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  +V  +G    + +  ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 477 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 536

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     K  YA  +   + +  EF K       + R+KGLGEM A+Q
Sbjct: 537 VYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI----LQRYKGLGEMNANQ 592

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET MD   RTL+RV I+     L   +  ++ LMG KA  R ++I++   F
Sbjct: 593 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 641


>gi|325955726|ref|YP_004286336.1| DNA gyrase subunit B [Lactobacillus acidophilus 30SC]
 gi|325332291|gb|ADZ06199.1| DNA gyrase subunit B [Lactobacillus acidophilus 30SC]
          Length = 654

 Score =  585 bits (1508), Expect = e-165,   Method: Composition-based stats.
 Identities = 245/654 (37%), Positives = 365/654 (55%), Gaps = 20/654 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +  +D Y+AS I++L GLE VR RPGMYIG T  + LHHL  E+IDN++DE +AG+A  I
Sbjct: 16  EKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNSIDERLAGFATKI 75

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           EV+++ +G +TV D+GRGIPV+   K   +  LE + T LHAGGKF    Y++SGGLHGV
Sbjct: 76  EVTINEDGSVTVQDDGRGIPVDIQEK-TGRPALETVFTVLHAGGKFGGGGYKVSGGLHGV 134

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIF 216
           G SVVNALS +L VTV R    +   F  G     +++   V  ++ GT + F PDP IF
Sbjct: 135 GASVVNALSTKLDVTVMRDGKKYFIDFDHGRVKDEMKQIGTVPLSEHGTIVHFYPDPDIF 194

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   FD   L    +  A+L+  +   ++  ++ +      E + + F GG+K Y+   
Sbjct: 195 TETTVFDDKILKNRIRELAFLNKGLTLTFTDKRKDS-----AETDVYKFEGGIKEYVAFL 249

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            +N+ ++  +    ++   G     VE A+ +       + ++ N I T EGG HE+G +
Sbjct: 250 NKNQEVLFDDPIYVESTYNGI---DVEVALQYTNGYKTTLMTFANNIHTYEGGMHEAGFK 306

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR +  YA   +    +  ++  +D+      ++SV    P+F GQTKTKL + DA+
Sbjct: 307 TALTRVVNDYAHKAKILKDKDDNLSGEDIREGMTAVVSVKHPNPQFEGQTKTKLGNSDAR 366

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
             V+ +  + F  +L++NP    K++E   +        +R +    +K+ +    LPGK
Sbjct: 367 TAVDKSFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVTRKKSGLEIANLPGK 426

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LAD + N    +ELFIVEG+SAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I  NQ+
Sbjct: 427 LADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQE 486

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  L  ALG    + +     RY K+IIMTDADVDGAHI +LLLT FY  M  +I++ ++
Sbjct: 487 IRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYNYMRPMIDKGYV 546

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL+++ QG    Y   +E     L   +     K  + R+KGLGEM   QL ET 
Sbjct: 547 YIARPPLYQVRQGKVVKYLDTDEELHDYLGSLQPS--PKPVVQRYKGLGEMDPEQLWETT 604

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           M+   R L RV         KD       LMG +   R  FI++ A +++++  
Sbjct: 605 MNPENRRLDRVSPEY----AKDADAVFELLMGNEVAPRRSFIEKNAKYVENLDA 654


>gi|226303498|ref|YP_002763456.1| DNA gyrase subunit B [Rhodococcus erythropolis PR4]
 gi|229491178|ref|ZP_04385006.1| DNA gyrase, B subunit [Rhodococcus erythropolis SK121]
 gi|226182613|dbj|BAH30717.1| DNA gyrase subunit B [Rhodococcus erythropolis PR4]
 gi|229321916|gb|EEN87709.1| DNA gyrase, B subunit [Rhodococcus erythropolis SK121]
          Length = 678

 Score =  585 bits (1508), Expect = e-165,   Method: Composition-based stats.
 Identities = 239/688 (34%), Positives = 368/688 (53%), Gaps = 45/688 (6%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
            +      ++S +Y+ASSI +LEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +
Sbjct: 2   AAQKSDTSTSSKDYNASSITVLEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNSVDEAM 61

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AG+A  +EV+L  +G + V+D+GRGIPV  H       T+E++LT LHAGGKFD+ +Y +
Sbjct: 62  AGHATKVEVTLLEDGGIRVIDDGRGIPVGMH--ASGVPTVEVVLTQLHAGGKFDSDSYAV 119

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVGISVVNALS  L V +      + Q ++   P      +     + GT ++F 
Sbjct: 120 SGGLHGVGISVVNALSTRLDVDIKVDGYRWQQTYTDSKPGEL--VQGDPTKETGTTVSFW 177

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------------- 249
            DP+IF     ++   + +  Q  A+L+  +    + ++                     
Sbjct: 178 ADPEIFET-TRYNFETVARRLQEMAFLNKGLTITLTDERAEVIDDEAAEVAEAPKSAAEE 236

Query: 250 ---EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
                       +   +++PGGL+ Y++   ++++ I + +     +  G     +E A+
Sbjct: 237 AEEAAQAAPRKSKTRIYHYPGGLEDYVRHINKSKTPIHNSVVGFTAKGTGH---ELEVAM 293

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLM 363
            W       + ++ NTI T EGGTHE G R ALT  + KY   +     +   +  DD+ 
Sbjct: 294 QWNSGYSESVHTFANTINTHEGGTHEEGFRAALTATVNKYALEKKLLKDKDPKLTGDDIR 353

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  ++   +
Sbjct: 354 EGLAAIISVKVGEPQFEGQTKTKLGNTEVKSFVQKACNEHLAHWFEANPADAKTIVNKAV 413

Query: 424 ERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
             ++ R+  RK RE V RK+A     LPGKLADC  N    +E++IVEGDSAGGSAK  R
Sbjct: 414 SSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPEKSEIYIVEGDSAGGSAKSGR 473

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           +   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K+++M 
Sbjct: 474 DSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDIAKLRYHKIVLMA 533

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT--QGTKSVYAHDEEHKQKI 600
           DADVDG HIA+LLLT  ++ M  L+E   ++L  PPL+++   +G +  +A+ +  +  +
Sbjct: 534 DADVDGQHIATLLLTLLFRFMRPLVEHGKVYLAQPPLYKLKWQKGAQPEFAYSDRERDAM 593

Query: 601 LE---EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           ++   E  K       I R+KGLGEM A +L ET MD   R L  V ++          +
Sbjct: 594 VKAGLESGKKINKDDGIQRYKGLGEMNAKELWETTMDPTVRVLRLVTLDD----AAAADE 649

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
             + LMG   + R  FI   A  +  + 
Sbjct: 650 LFSVLMGEDVEARRSFITRNARDVRFLD 677


>gi|302559661|ref|ZP_07312003.1| DNA gyrase, B subunit [Streptomyces griseoflavus Tu4000]
 gi|302477279|gb|EFL40372.1| DNA gyrase, B subunit [Streptomyces griseoflavus Tu4000]
          Length = 686

 Score =  585 bits (1508), Expect = e-165,   Method: Composition-based stats.
 Identities = 254/703 (36%), Positives = 379/703 (53%), Gaps = 36/703 (5%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           M D         P ++  S++       +  + A +    + +YDAS+I +LEGL+ VR 
Sbjct: 1   MADSGN------PNENIPSTDAG-----VNSAAATSGSEGTASYDASAITVLEGLDAVRK 49

Query: 61  RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           RPGMYIG T E+ LHHL  EV+DN++DE +AG+A+ I+V++  +G + VVDNGRGIPV  
Sbjct: 50  RPGMYIGSTGERGLHHLVQEVVDNSVDEALAGHADTIDVTILADGGVRVVDNGRGIPVGI 109

Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
            P    K  +E++LT LHAGGKF    Y +SGGLHGVG+SVVNALS  + V V      +
Sbjct: 110 VP-SEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGHRW 168

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
           +Q++  G+P +PL + E      GT +TF  D  IF     +    L +  Q  A+L+  
Sbjct: 169 TQEYKLGVPTAPLARHEATEE-TGTSVTFWADGDIFET-TDYSFETLSRRFQEMAFLNKG 226

Query: 241 VKTCWSCDKEI-----------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFT 289
           +K   + ++E             ++    +   +++ GG+  +++     +  +      
Sbjct: 227 LKINLTDERESAKATAGADEAGEDEKYEVKSVSYHYEGGIVDFVKYLNSRKGELVHPTVI 286

Query: 290 GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
               +      ++E A+ W       + S+ N I T EGGTHE G R ALT  I KYA  
Sbjct: 287 DLEAEDRDRHLSLEVAMQWNGGYTEGVYSFANIIHTHEGGTHEEGFRAALTSLINKYARD 346

Query: 349 TQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
            +    +  ++  DD+      I+SV + EP+F GQTKTKL + + +  V+  + +  + 
Sbjct: 347 KRLLRDKDDNLTGDDIREGLTAIISVKLAEPQFEGQTKTKLGNTEVKTFVQKVVYEHLND 406

Query: 407 YLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTE 465
           +L +NP EA  ++   I  +  R+  RK R++ R+   +    LPGKL+DC  N     E
Sbjct: 407 WLDRNPNEAADIIRKGIAAATARVAARKARDLTRRKGLLESASLPGKLSDCQSNDPVKCE 466

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
           +FIVEGDSAGGSAK  RN   QA+LP+RGKILNV  A  ++I  NQ+I  ++ A G    
Sbjct: 467 IFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEKARIDRILQNQEIQAMISAFGTGVH 526

Query: 526 SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG 585
             +  E LRY K+I+M DADVDG HI +LLLTF ++ M  L+E  H+FL  PPL++I  G
Sbjct: 527 EDFDIERLRYHKIILMADADVDGQHINTLLLTFLFRFMRPLVEAGHVFLSRPPLYKIKWG 586

Query: 586 TKSV-YAHDEEHKQKILEEFKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLR 642
                YA+ +  +  ++E  +  GK   +  + RFKGLGEM A +L+ T MD   R L +
Sbjct: 587 RDDFEYAYSDRERDALIEMGRNAGKRIREDSVQRFKGLGEMNAEELRITTMDQEHRVLGQ 646

Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           V ++          D  + LMG   + R  FIQ  A  +  + 
Sbjct: 647 VTLDD----AAQADDLFSVLMGEDVEARRAFIQRNAKDVRFLD 685


>gi|322411915|gb|EFY02823.1| DNA topoisomerase IV subunit B [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 649

 Score =  585 bits (1508), Expect = e-165,   Method: Composition-based stats.
 Identities = 239/653 (36%), Positives = 367/653 (56%), Gaps = 34/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I V +
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIRVII 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G ++V D+GRG+P   H       T+++I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSVSVADSGRGMPTGQH--VMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q F  G  P++ L K     ++K GT +TF PD  IF   
Sbjct: 127 VNALSAWLKVEITRDGAVYRQCFENGGKPVTTLRKVGTAPKSKSGTVVTFMPDDTIFSTI 186

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   VK   +  +        P  EEF++  G++ +++   E+
Sbjct: 187 -DFKFNTIAERLKESAFLLKNVKMSLTDLR-----GDEPIVEEFHYENGVQDFVEYLNED 240

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++  I+    ++       VE A+ + +   +   S+ N + T +GG+HE+GL+ A+
Sbjct: 241 KETLTPVIYMEGQDQD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 296

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ + E   +F GQTK KL S  A+ 
Sbjct: 297 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 356

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451
            V++ + +    +L++N   A+ L+   I+  + R   RK R+ +R     K       G
Sbjct: 357 IVDSIVSEKLTFFLLENGELASNLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 416

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL       A   EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N+
Sbjct: 417 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 476

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  +V  +G    + +  ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 477 EISTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     K  YA  +   + + +EF K       + R+KGLGEM A+Q
Sbjct: 537 VYIALPPLYKMSKGKGKTEKISYAWTDGELEDLRKEFGKGAI----LQRYKGLGEMNANQ 592

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET MD   RTL+RV I+     L   +  ++ LMG KA  R ++I++   F
Sbjct: 593 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 641


>gi|241760961|ref|ZP_04759050.1| DNA topoisomerase IV, B subunit [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|241374580|gb|EER64041.1| DNA topoisomerase IV, B subunit [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 660

 Score =  585 bits (1508), Expect = e-165,   Method: Composition-based stats.
 Identities = 338/653 (51%), Positives = 450/653 (68%), Gaps = 7/653 (1%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
                 ++DNY+A SI +LEGLEP+R RPGMYIGGTDE+A HHL +EV+DNAMDE +AG+
Sbjct: 7   KSTVTPSADNYNADSIEVLEGLEPIRRRPGMYIGGTDERAFHHLAAEVLDNAMDEAVAGH 66

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A  IEV+LD    LT+ DNGRGIP++ HPKFP+KS LE+ILTTLH+GGKF N  Y  SGG
Sbjct: 67  ATRIEVTLDTGDRLTITDNGRGIPIDPHPKFPDKSALEVILTTLHSGGKFSNKAYATSGG 126

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVGISVVNALS E  V VAR   ++ Q FSRG+PL  LE+     N+RGT ++F PD 
Sbjct: 127 LHGVGISVVNALSSETTVEVARNRLLYRQSFSRGVPLGALEQVGNAPNRRGTSVSFIPDT 186

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IFG    F  A+L +M +SKAYL   V+  W C  E+A +  +PEK   +FPGGL  YL
Sbjct: 187 EIFGKTLHFKPAKLYRMVRSKAYLFAGVEIIWRCAPELASED-VPEKAVIHFPGGLADYL 245

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHES 332
           + ++  R   + E FTG+        G+VEWA+AW          YCNTI T  GGTHE 
Sbjct: 246 KEEVGKRDCATKEFFTGRQSFSDE-EGSVEWAVAWPLWSEGSSLYYCNTIPTPAGGTHEQ 304

Query: 333 GLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           GLR+AL RG++ + EL   K+A  I  +D+++ A  +LS+FIREP+F  QTK +L +   
Sbjct: 305 GLRLALVRGLRAFGELVGLKKAKDIAPEDVIVGADMVLSLFIREPQFQSQTKDRLTNPQV 364

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLP 450
              VE A+RD FDH+L  +      LL +++ER +ERLRRR +R++ RKT    RKLRLP
Sbjct: 365 AGLVEKAIRDHFDHFLTDDMDRGRALLGFIMERMDERLRRRAERDIKRKTVTAARKLRLP 424

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL DCSQ+ A  +ELFIVEGDSAGGSAKQAR+R  QA+LP+RGKILNVA+A + KI  N
Sbjct: 425 GKLTDCSQDTADNSELFIVEGDSAGGSAKQARDRKTQAILPIRGKILNVAAATNAKILAN 484

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           Q+I D+ QALGC  R +   + LRY+++IIM+DADVDGAHIA+LL+TFF++EM +++   
Sbjct: 485 QEISDITQALGCGVRDRCDPQALRYDRIIIMSDADVDGAHIATLLMTFFFREMTEIVRNG 544

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           H++L  PPL+R+  G K++YA D+ H+ ++ +   K    K+E++RFKGLGEM   QL+E
Sbjct: 545 HIYLAQPPLYRLKAGAKTLYARDDNHRVELEKTVFK--GRKVEVARFKGLGEMNPQQLRE 602

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
           T MD   R+LLRV + KD    ++  D +++LMG + + RF FIQ  A+  D+
Sbjct: 603 TTMDPKTRSLLRVTLPKDYQDRQEISDLVDRLMGRQPEHRFAFIQANAAQFDE 655


>gi|239947839|ref|ZP_04699592.1| DNA topoisomerase IV, B subunit [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239922115|gb|EER22139.1| DNA topoisomerase IV, B subunit [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 662

 Score =  585 bits (1507), Expect = e-165,   Method: Composition-based stats.
 Identities = 332/660 (50%), Positives = 447/660 (67%), Gaps = 12/660 (1%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +    N+   +NY A  I +LEGLEPVR RPGMYIGGTD  A+HHL SEV+DNAMDE +A
Sbjct: 8   NKEKKNKLVDNNYSAKDIEVLEGLEPVRKRPGMYIGGTDSNAMHHLVSEVLDNAMDEAVA 67

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+A++I + +  +  +T+ DNGRGIP++NHPKFP+KS LE+ILTTLH+GGKF N+ Y  +
Sbjct: 68  GFASIITIKMHQDHSITIFDNGRGIPIDNHPKFPDKSALEVILTTLHSGGKFSNNVYHTA 127

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVGISVVNALS  L + V +Q  ++SQ +S+G  L+ L  +E  +  RGT I F P
Sbjct: 128 GGLHGVGISVVNALSKHLEINVYKQGKLYSQSYSKGEKLTDLICEEASKRLRGTSINFTP 187

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           DP+IF  K  F+  ++ ++ +SKAYL   V   W C+ E+     IP+K    FP GLK 
Sbjct: 188 DPEIFSGKLHFNPKKIYELARSKAYLYRGVTIEWECEVEVP--SDIPKKALINFPNGLKD 245

Query: 272 YLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330
           YL +K+   +L+  EIF+G  E      +          + +  I SYCNT+ T +GGTH
Sbjct: 246 YLSSKITLDNLVIPEIFSGNIESTLDGIKLEWAICWQNNDSSAFIQSYCNTVPTPQGGTH 305

Query: 331 ESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           E GL+ A+ RG+K Y E+  NK+A ++  +D++ +A  +LS+F+ EP F GQTK KLVS 
Sbjct: 306 EQGLKSAILRGLKAYGEMIGNKKAANLTIEDILETASVVLSIFVAEPSFQGQTKEKLVSN 365

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
              + VEN ++D FDH+L  +   AT LLE VI  +E R+ ++ ++ ++RK A +KLRLP
Sbjct: 366 GVSKPVENIIKDHFDHFLSSDKALATNLLEHVISIAEFRISKKNEKNISRKNATQKLRLP 425

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC++    GTELFIVEGDSAGGSAKQARNR  QAVLPL GK+LNVAS+  EKI NN
Sbjct: 426 GKLADCTRTSPEGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSTLEKIVNN 485

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           Q I DL  AL C +   Y++E+LRYEK+IIMTDADVDGAHIASLL+TFF+  M  L+E+ 
Sbjct: 486 QAIQDLEIALACGSLKNYKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEEG 545

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           HL+L  PPL+R+TQ  K+ YA DEE K K+ ++  K  K KIE+ RFKGLGEM+ +QLKE
Sbjct: 546 HLYLAKPPLYRLTQSNKTYYAGDEEEKAKLTDKLSKASKAKIEVGRFKGLGEMMPAQLKE 605

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA-----SFIDDVG 685
           T M   KR+LL+V +       ++    ++ LMG K ++RF+FI E+A       I ++ 
Sbjct: 606 TTMHPEKRSLLKVTLED----FQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIISELD 661


>gi|260753072|ref|YP_003225965.1| DNA topoisomerase IV subunit B [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258552435|gb|ACV75381.1| DNA topoisomerase IV, B subunit [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 660

 Score =  585 bits (1507), Expect = e-165,   Method: Composition-based stats.
 Identities = 338/653 (51%), Positives = 450/653 (68%), Gaps = 7/653 (1%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
                 ++DNY+A SI +LEGLEP+R RPGMYIGGTDE+A HHL +EV+DNAMDE +AG+
Sbjct: 7   KSTVTPSADNYNADSIEVLEGLEPIRRRPGMYIGGTDERAFHHLAAEVLDNAMDEAVAGH 66

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A  IEV+LD    LT+ DNGRGIP++ HPKFP+KS LE+ILTTLH+GGKF N  Y  SGG
Sbjct: 67  ATRIEVTLDTGDRLTITDNGRGIPIDPHPKFPDKSALEVILTTLHSGGKFSNKAYATSGG 126

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVGISVVNALS E  V VAR   ++ Q FSRG+PL  LE+     N+RGT ++F PD 
Sbjct: 127 LHGVGISVVNALSSETTVEVARNRLLYRQSFSRGVPLGALEQVGNAPNRRGTSVSFIPDT 186

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IFG    F  A+L +M +SKAYL   V+  W C  E+A +  +PEK   +FPGGL  YL
Sbjct: 187 EIFGKTLHFKPAKLYRMVRSKAYLFAGVEIIWRCAPELASED-VPEKAVIHFPGGLADYL 245

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHES 332
           + ++  R   + E FTG+        G+VEWA+AW          YCNTI T  GGTHE 
Sbjct: 246 KEEVGKRDCATKEFFTGRQSFSDE-EGSVEWAVAWPLWSEGSSLYYCNTIPTPAGGTHEQ 304

Query: 333 GLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           GLR+AL RG++ + EL   K+A  I  +D+++ A  +LS+FIREP+F  QTK +L +   
Sbjct: 305 GLRLALVRGLRAFGELVGLKKAKDIAPEDVIVGADMVLSLFIREPQFQSQTKDRLTNPQV 364

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLP 450
              VE A+RD FDH+L  +      LL +++ER +ERLRRR +R++ RKT    RKLRLP
Sbjct: 365 AGLVEKAIRDHFDHFLTDDMDRGRALLGFIMERMDERLRRRAERDIKRKTVTAARKLRLP 424

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL DCSQ+ A  +ELFIVEGDSAGGSAKQAR+R  QA+LP+RGKILNVA+A + KI  N
Sbjct: 425 GKLTDCSQDAADNSELFIVEGDSAGGSAKQARDRKTQAILPIRGKILNVAAATNAKILAN 484

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           Q+I D+ QALGC  R +   + LRY+++IIM+DADVDGAHIA+LL+TFF++EM +++   
Sbjct: 485 QEISDITQALGCGVRDRCDPQALRYDRIIIMSDADVDGAHIATLLMTFFFREMTEIVRNG 544

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           H++L  PPL+R+  G K++YA D+ H+ ++ +   K    K+E++RFKGLGEM   QL+E
Sbjct: 545 HIYLAQPPLYRLKAGAKTLYARDDNHRVELEKTVFK--GRKVEVARFKGLGEMNPQQLRE 602

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
           T MD   R+LLRV + KD    ++  D +++LMG + + RF FIQ  A+  D+
Sbjct: 603 TTMDPKTRSLLRVTLPKDYQDRQEISDLVDRLMGRQPEHRFAFIQANAAQFDE 655


>gi|156889072|gb|ABU96687.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|156889074|gb|ABU96688.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 641

 Score =  585 bits (1507), Expect = e-165,   Method: Composition-based stats.
 Identities = 240/652 (36%), Positives = 367/652 (56%), Gaps = 34/652 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I V +
Sbjct: 10  NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIRVVI 69

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G ++V D+GRG+P   H       T+++I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 70  NKDGSVSVADSGRGMPTGQH--AMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 127

Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F  G  P++ L+K     ++K GT +TF PD KIF   
Sbjct: 128 VNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTI 187

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   VK   +  +        P  EEF++  G++ +++   E+
Sbjct: 188 -DFKFNTIAERLKESAFLLKNVKMSLTDLR-----GDEPIVEEFHYENGVQDFVEYLNED 241

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++  I+    +        VE A+ + +   +   S+ N + T +GG+HE+GL+ A+
Sbjct: 242 KETLTPVIYMEGQDHD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ + E   +F GQTK KL S  A+ 
Sbjct: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 357

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451
            V++ + +    +L++N   A+ L+   I+    R   RK R+ +R     K       G
Sbjct: 358 IVDSIVSEKLTFFLLENGELASNLVRKAIKARNAREAARKARDDSRNGKKNKKDKGLLSG 417

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL       A   EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N+
Sbjct: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  +V  +G    + +  ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 478 EINTMVHTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 537

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     K  YA  +   + + +EF K       + R+KGLGEM A+Q
Sbjct: 538 VYIALPPLYKMSKGKGKTEKVSYAWTDGELEDLRKEFGKGAI----LQRYKGLGEMNANQ 593

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679
           L ET MD   RTL+RV I+     L   +  ++ LMG KA  R K+I++   
Sbjct: 594 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRKWIEDNVK 641


>gi|238650411|ref|YP_002916263.1| DNA topoisomerase IV subunit B [Rickettsia peacockii str. Rustic]
 gi|238624509|gb|ACR47215.1| DNA topoisomerase IV subunit B [Rickettsia peacockii str. Rustic]
          Length = 662

 Score =  585 bits (1507), Expect = e-165,   Method: Composition-based stats.
 Identities = 337/661 (50%), Positives = 451/661 (68%), Gaps = 14/661 (2%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +    N+   +NY A  I +LEGLEPVR RPGMYIGGTD  A+HHL SEV+DNAMDE +A
Sbjct: 8   NKEKKNKLVDNNYSAKDIEVLEGLEPVRKRPGMYIGGTDSNAMHHLVSEVLDNAMDEAVA 67

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+A++I + +  +  +T+ DNGRGIP++NHPKFP+KS LE+ILTTLH+GGKF N+ Y  +
Sbjct: 68  GFASIITIKMHHDHSITIFDNGRGIPIDNHPKFPDKSALEVILTTLHSGGKFSNNVYHTA 127

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVGISVVNALS  L + V +Q  ++SQ +S+G  L+ L  +E  +  RGT I F P
Sbjct: 128 GGLHGVGISVVNALSKHLEIKVYKQGKLYSQSYSKGEKLTDLICEEASKRLRGTSINFTP 187

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           DP+IF +K  F+  ++ ++ +SKAYL   V   W C+ E+  +  IP+K    FP GLK 
Sbjct: 188 DPEIFSEKLHFNPKKIYELARSKAYLYRGVTIEWVCEVEV--QSDIPKKALISFPNGLKD 245

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT--SYCNTILTDEGGT 329
           YL +K+   +L+  EIF G  E     R  +EWAI W   +      SYCNT+ T +GGT
Sbjct: 246 YLSSKITLDNLVIPEIFAGNIESTPD-RIKLEWAICWQNNDSSAFVQSYCNTVPTPQGGT 304

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           HE GL+ A+ RG+K Y E+  NK+A ++  +D++ +   +LS+FI EP F GQTK KLVS
Sbjct: 305 HEQGLKSAILRGLKAYGEMIGNKKAANLTIEDILETTSVVLSIFIAEPSFQGQTKEKLVS 364

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
               + VEN ++D FDH+L  +   AT LLE VI  +E R+ ++ ++ ++RK A +KLRL
Sbjct: 365 NGVSKPVENIIKDHFDHFLSSDKALATNLLEHVISIAEFRISKKNEKNISRKNATQKLRL 424

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC++    GTELFIVEGDSAGGSAKQARNR  QAVLPL GK+LNVAS+  EKI N
Sbjct: 425 PGKLADCTRTSPEGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSTLEKIVN 484

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           NQ I DL  AL C +   Y++E+LRYEK+IIMTDADVDGAHIASLL+TFF+  M  L+E+
Sbjct: 485 NQAIQDLEIALACGSLKNYKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEE 544

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
            HL+L  PPL+R+TQ  K+ YA DEE K K+ ++  K  K KIE+ RFKGLGEM+ +QLK
Sbjct: 545 GHLYLAKPPLYRLTQSNKTYYAGDEEEKAKLTDKLLKASKAKIEVGRFKGLGEMMPAQLK 604

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA-----SFIDDV 684
           ET M   KR+LL+V +       ++    ++ LMG K ++RF+FI E+A       I ++
Sbjct: 605 ETTMHPEKRSLLKVTLED----FQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIISEL 660

Query: 685 G 685
            
Sbjct: 661 D 661


>gi|315037235|ref|YP_004030803.1| DNA gyrase, B subunit [Lactobacillus amylovorus GRL 1112]
 gi|312275368|gb|ADQ58008.1| DNA gyrase, B subunit [Lactobacillus amylovorus GRL 1112]
 gi|327182554|gb|AEA31001.1| DNA gyrase subunit B [Lactobacillus amylovorus GRL 1118]
          Length = 654

 Score =  585 bits (1507), Expect = e-164,   Method: Composition-based stats.
 Identities = 244/654 (37%), Positives = 365/654 (55%), Gaps = 20/654 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +  +D Y+AS I++L GLE VR RPGMYIG T  + LHHL  E+IDN++DE +AG+A  I
Sbjct: 16  EKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNSIDERLAGFATKI 75

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           EV+++ +G +TV D+GRGIPV+   K   +  LE + T LHAGGKF    Y++SGGLHGV
Sbjct: 76  EVTINEDGSVTVQDDGRGIPVDIQEK-TGRPALETVFTVLHAGGKFGGGGYKVSGGLHGV 134

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIF 216
           G SVVNALS +L VTV R    +   F  G     +++   V  ++ GT + F PDP IF
Sbjct: 135 GASVVNALSTKLDVTVMRDGKKYFIDFDHGRVKDEMKQIGTVPLSEHGTIVHFYPDPDIF 194

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   FD   L    +  A+L+  +   ++  ++ +      E + + F GG+K Y+   
Sbjct: 195 TETTVFDDKILKNRIRELAFLNKGLTLTFTDKRKDS-----AETDVYKFEGGIKEYVAFL 249

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            +++ ++  +    ++   G     VE A+ +       + ++ N I T EGG HE+G +
Sbjct: 250 NKDQEVLFDDPIYVESTYNGI---DVEVALQYTNGYKTTLMTFANNIHTYEGGMHEAGFK 306

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR +  YA   +    +  ++  +D+      ++SV    P+F GQTKTKL + DA+
Sbjct: 307 TALTRVVNDYAHKAKILKDKDDNLSGEDIREGMTAVVSVKHPNPQFEGQTKTKLGNSDAR 366

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
             V+ +  + F  +L++NP    K++E   +        +R +    +K+ +    LPGK
Sbjct: 367 TAVDKSFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVTRKKSGLEIANLPGK 426

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LAD + N    +ELFIVEG+SAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I  NQ+
Sbjct: 427 LADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQE 486

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  L  ALG    + +     RY K+IIMTDADVDGAHI +LLLT FY  M  +I++ ++
Sbjct: 487 IRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYNYMRPMIDKGYV 546

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL+++ QG    Y   +E     L   +     K  + R+KGLGEM   QL ET 
Sbjct: 547 YIARPPLYQVRQGKVVKYLDTDEELHDYLGSLQPS--PKPVVQRYKGLGEMDPEQLWETT 604

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           M+   R L RV         KD       LMG +   R  FI++ A +++++  
Sbjct: 605 MNPENRRLDRVSPEY----AKDADAVFELLMGNEVAPRRSFIEKNAKYVENLDA 654


>gi|224086827|ref|XP_002307976.1| predicted protein [Populus trichocarpa]
 gi|222853952|gb|EEE91499.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  585 bits (1507), Expect = e-164,   Method: Composition-based stats.
 Identities = 246/664 (37%), Positives = 382/664 (57%), Gaps = 23/664 (3%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
            +    ++S  Y +  I++L+GLEPVR RPGMYIG T  + LHHL  E++DNA+DE  AG
Sbjct: 1   ESQKESASSKAYGSDQIQVLKGLEPVRKRPGMYIGSTGPRGLHHLVYEILDNAVDEAQAG 60

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF--DNSTYEI 150
           YA+ I V L  +  +++ DNGRGIP + H +   KS LE +LT LHAGGKF   NS Y +
Sbjct: 61  YASKINVVLHSDNSISITDNGRGIPTDLH-QVTKKSALETVLTVLHAGGKFGGSNSGYSV 119

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE---KVRNKRGTRI 207
           SGGLHGVG+SVVNALS+EL VTV R    + QK+SRG P++ L   E   + ++++GTRI
Sbjct: 120 SGGLHGVGLSVVNALSEELEVTVWRDGKEYQQKYSRGNPVTTLMCYELSAESKDQKGTRI 179

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F PD ++F  +  FD   +    +  A+L+ ++      +    EK    E    ++ G
Sbjct: 180 RFWPDKEVFTTEIQFDYNTVGGRVRELAFLNPKLAISLKKEDNDPEKNQYDEH---FYAG 236

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEG 327
           GL  Y+     ++  +  ++ + + E  G     +         +  I  Y N+I T +G
Sbjct: 237 GLIEYVNWLNTDKKSLH-DVVSFRKEVDGIA-IDMALQWCSDAYSDTILGYANSIRTVDG 294

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH  G++ +LTR +  + + ++    + IS+  + +      I+SV +  PEF GQTKT
Sbjct: 295 GTHIDGVKASLTRTLNNFGKKSKVIKDKDISLSGEHVREGLTCIISVKVPSPEFEGQTKT 354

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAI 444
           +L + + ++ VE ++++    YL  +P     +L   +         +R +  V +K+ +
Sbjct: 355 RLGNPEVRKVVEQSVQEYLTEYLELHPDVLDSILSKSLNALKAALAAKRARELVRQKSVL 414

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
           +   LPGKLADCS      +E+FIVEGDSAGGSAKQ R+R  QA+LPLRGKILN+     
Sbjct: 415 KSSSLPGKLADCSSTDPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERRDE 474

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           E +  N++I +L+ ALG   + +  ++D LRY ++II+TDADVDGAHI +LLLTFF++  
Sbjct: 475 EAMYKNEEIQNLILALGLGVKGEDFKKDALRYHRIIILTDADVDGAHIRTLLLTFFFRYQ 534

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
             L ++  +++  PPL+++ +G +  Y  D+   +K+   F ++      + RFKGLGEM
Sbjct: 535 RALFDEGCIYVGVPPLYKVERGKQVYYCFDDAELRKVQSSFPQN--ASYNMQRFKGLGEM 592

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS--FI 681
           + +QL ET MD  +R L ++ +        +     + LMGT+ D R + IQ+ A    +
Sbjct: 593 MPAQLWETTMDPEQRLLKQLVVED----AAEASVVFSSLMGTRVDGRKELIQKAARMINV 648

Query: 682 DDVG 685
           D + 
Sbjct: 649 DHLD 652


>gi|85057535|ref|YP_456451.1| DNA gyrase subunit B [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|84789640|gb|ABC65372.1| DNA gyrase subunit B [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 671

 Score =  585 bits (1507), Expect = e-164,   Method: Composition-based stats.
 Identities = 261/681 (38%), Positives = 377/681 (55%), Gaps = 49/681 (7%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY+A SI+ILEGLE VR RPGMYIG T +K LHHL  E++DN++DE +AG+AN I + +
Sbjct: 2   KNYNADSIQILEGLEAVRKRPGMYIGSTAQKGLHHLVWEIVDNSIDEALAGHANNITLEI 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
                ++V DNGRGIPV+ HPK   K  +E ILTTLHAGGKFD+S+Y++SGGLHGVG SV
Sbjct: 62  LPGEIISVSDNGRGIPVDIHPK-TGKPAVETILTTLHAGGKFDSSSYKVSGGLHGVGASV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+   V +     I+ QK+ +GI +SPLE        RGT I F  DP+IF +   
Sbjct: 121 VNALSNWFTVEIRLNKQIYFQKYEKGIAVSPLEVIGGTNK-RGTTIQFLSDPEIFQETTI 179

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L +  Q  ++L+  +K   +  +   E         F    GL+ Y+     +  
Sbjct: 180 YNFDTLKERMQQLSFLNKGLKLKIADKRYEKETVFN-----FCHEKGLQDYIDFINTSHK 234

Query: 282 L--ISSEIFTGKTEKKGTHRGTVEWAIA-----------------------WCEENPEIT 316
                   +  K  +K       E+                             ++ +I 
Sbjct: 235 QIPFHEIFYLEKEAQKLAFEIVFEYTTQLRPTKKDEQGNEIEEKEDKDTIPRYTQSQKIF 294

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIR 375
           S+ N I T EGGTHE G ++ALTR I KYA+     K+   ++S+D++     I+S+  +
Sbjct: 295 SFVNNIPTHEGGTHEEGFKLALTRVISKYAKEFNLLKKDEHLLSEDILEGITAIISLKHQ 354

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           +P+F GQTK KL + + ++       +  + YL+++P ++ K+++  +  +  RL  ++ 
Sbjct: 355 DPQFEGQTKAKLANTEVRQITSQLFGEFLEKYLLEHPQDSRKIIDKCLLSANARLAAKRA 414

Query: 436 REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           REV R   +  L    KLADC     H +EL+IVEGDSAGGSAKQ R+   QA+LPLRGK
Sbjct: 415 REVVRNKPLDSLGFASKLADCRSKDPHISELYIVEGDSAGGSAKQGRDSRFQAILPLRGK 474

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTR----SQYREEDLRYEKVIIMTDADVDGAHI 551
           +LNV  +   KI  N++I  L+QA+G          +  + +RY K+IIMTDADVDGAHI
Sbjct: 475 VLNVEKSLDAKILTNKEIKSLIQAIGAGINIGKGKDFNVDKIRYHKIIIMTDADVDGAHI 534

Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKS-VYAHDEEHKQKILEEFKKHGKG 610
            +LLLTFF++   +LIE+ +++   PPL++  +G  +  Y +DE    K  + F      
Sbjct: 535 RTLLLTFFFRHFRELIEKGYIYFARPPLYKYQKGKGTPKYFYDE----KTKQTFANKNSL 590

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINK------DLNSLKDTQDSINKLMG 664
           K    R+KGLGEM  +QL ET MD   RTLL+  +        D  +L +T  + N LMG
Sbjct: 591 KDGFQRYKGLGEMNPNQLWETTMDPENRTLLKASLKDALNALSDEEALMETDQTFNMLMG 650

Query: 665 TKADERFKFIQERASFIDDVG 685
            K   R  FI E+A   D + 
Sbjct: 651 EKVLPRKNFILEKALEAD-LD 670


>gi|298345811|ref|YP_003718498.1| DNA topoisomerase [Mobiluncus curtisii ATCC 43063]
 gi|304390485|ref|ZP_07372438.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|298235872|gb|ADI67004.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus curtisii ATCC
           43063]
 gi|304326241|gb|EFL93486.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 686

 Score =  584 bits (1506), Expect = e-164,   Method: Composition-based stats.
 Identities = 249/689 (36%), Positives = 363/689 (52%), Gaps = 33/689 (4%)

Query: 24  KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVID 83
            K  +  D+     +   ++YDAS IR+LEGLE VR+RPGMYIG T E+ LHHL  EV+D
Sbjct: 3   AKKPKKGDTNVSDFEKPEEHYDASDIRVLEGLEAVRVRPGMYIGSTGERGLHHLVYEVVD 62

Query: 84  NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143
           N++DE +AGY + IEV+L  +G + V DNGRGIPV  HP   ++ T+E+++T LHAGGKF
Sbjct: 63  NSVDESLAGYCDHIEVTLQADGGVRVADNGRGIPVAEHP-SEHRPTVEVVMTILHAGGKF 121

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
             S+Y +SGGLHGVGISVVNALS ++  TV R    +  +F  G  +    ++ +   + 
Sbjct: 122 GGSSYAVSGGLHGVGISVVNALSTKILTTVKRDGYEWHIEFGNGGKVIQPLRRGEPTEET 181

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK------------EI 251
           GT   F PDP+IF     FD   L    Q  A+L+  ++   + ++            + 
Sbjct: 182 GTVQVFYPDPEIFET-VEFDYETLRTRFQQMAFLNKGLRITLTDERPNVTAEGDFVTGDQ 240

Query: 252 AEKYGIPEK----EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE---KKGTHRGTVEW 304
                 P+       + +  GL  Y+    + +            E   +   +   +E 
Sbjct: 241 DGDADSPKVGRRSVSYCYENGLHDYVHFINDTKKSEVVHEEIIDFEASLEDVENAMALEI 300

Query: 305 AIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDD 361
           A+ W       I +Y NTI T EGGTHE G R ALT  + K          +  ++  DD
Sbjct: 301 ALQWTSAYSESIYTYANTINTTEGGTHEEGFRAALTSLMNKVGREKGFIKDKDENLSGDD 360

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
                  ++SV IR P+F GQTKTKL + +A+  V+  +      +   +P E   ++  
Sbjct: 361 CREGLTAVISVKIRNPQFEGQTKTKLGNTEARTFVQQTVYSQLGDWFDAHPAECKAIIAK 420

Query: 422 VIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
                + R   RK R+   RKTA+    +PGKL DCS   A   E+F+VEGDSAGGSA  
Sbjct: 421 AQSAQQARNAARKARDATRRKTALDSFSMPGKLRDCSSRDASNCEIFLVEGDSAGGSAVA 480

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            R+ ++QA+LPLRGKILNV  A  ++  +N++I  L+ A G      +    LRY K+++
Sbjct: 481 GRDPAHQAILPLRGKILNVEKARLDRALDNKEIQSLITAFGTGIGEDFDLSKLRYYKIVL 540

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQK 599
           M DADVDG HI +LLLT  ++ M  LIE  H+FL +PPL+R+    K   + + ++ K K
Sbjct: 541 MADADVDGQHITTLLLTLLFRYMRPLIENGHVFLATPPLYRLKWSNKPHQFVYSDKEKDK 600

Query: 600 ILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
           ++      G    +   I R+KGLGEM A +L ET MD + R L +V +++         
Sbjct: 601 MVSLGLDSGARMPKEGGIQRYKGLGEMSAQELWETTMDPSARLLKQVTMDE----AASAD 656

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           +  + LMG     R  FIQ  A  +  + 
Sbjct: 657 EVFSLLMGEDVSSRRAFIQRNAQDVRFLD 685


>gi|320451329|ref|YP_004203425.1| DNA gyrase subunit B [Thermus scotoductus SA-01]
 gi|320151498|gb|ADW22876.1| DNA gyrase, subunit B [Thermus scotoductus SA-01]
          Length = 635

 Score =  584 bits (1506), Expect = e-164,   Method: Composition-based stats.
 Identities = 261/653 (39%), Positives = 371/653 (56%), Gaps = 30/653 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +YDAS+I++L+GLE VR RP MYIGGT  +  HHLF E++DNA+DE +AGYA  I  +L+
Sbjct: 2   SYDASAIKVLKGLEGVRHRPAMYIGGTGVEGYHHLFKEILDNAVDEALAGYATEIVTTLN 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G LTV DNGRGIPV+  P+   K  +E+I TTLH+GGKFD+S Y++SGGLHGVG SVV
Sbjct: 62  PDGSLTVEDNGRGIPVDLMPE-EGKPAVEVIYTTLHSGGKFDSSAYKVSGGLHGVGASVV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221
           NALS+   V V R+       FSRG    PL       + K GTR+TF+PDP IFG+   
Sbjct: 121 NALSEWTVVEVFREGKHHRIAFSRGEVTEPLAVVGPAPKGKTGTRVTFKPDPLIFGN-QA 179

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD +++    +  +YL   ++  +       E       + +   GG+ ++ +   E   
Sbjct: 180 FDPSKIRARLREVSYLVAGLRLVFKDLIHGRE-------DVYLDKGGVASFAKALAEGEE 232

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTR 340
           L+  + F  K ++       VE  +   +    EI +Y N I T +GGTH +  + A +R
Sbjct: 233 LLYEKPFLLKGQE---GEVEVEVGLIHTKGYNAEILTYANMIPTRDGGTHLTAFKSAYSR 289

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            + +YA+      ++      DDL+     ++SV + +P+F GQTK KL++ +A   V  
Sbjct: 290 ALNQYAKKAGLNKEKGPQPTGDDLLEGLYAVVSVKLPQPQFEGQTKGKLLNPEAGSAVSQ 349

Query: 399 ALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
            + + F   L +NP  A  +  + +         R+ +  V R+  +    LPGKLADC 
Sbjct: 350 VVYEKFLEILEENPRIAKTIYEKALRAAQAREAARKARELVRRQNPLESDDLPGKLADCQ 409

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                  ELFIVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  AG  K   N ++  +V
Sbjct: 410 TENPEEAELFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKAGLSKALKNAEVRAMV 469

Query: 518 QALGCRT-----RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
            A+G         + +  E LRY K+IIMTDADVDG+HI +LLLTFFY+ M  LIE+ H+
Sbjct: 470 AAIGVGIGGTGDEAHFDLEGLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPLIERGHV 529

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL+R+  G K  Y + +E     L+E +       E+ RFKGLGEM   QL ET 
Sbjct: 530 YIAQPPLYRLQVGKKVEYLYSDEELAARLKELEG---KSYEVQRFKGLGEMNPEQLWETT 586

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           M+  KR L +VE+   L    +  +   KLMG +   R +FI+E A + + + 
Sbjct: 587 MNPEKRVLKKVELQDAL----EASELFEKLMGQEVAPRREFIEEHARYAE-LD 634


>gi|302191325|ref|ZP_07267579.1| DNA topoisomerase IV subunit B [Lactobacillus iners AB-1]
 gi|312872974|ref|ZP_07733034.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LEAF 2062A-h1]
 gi|312874129|ref|ZP_07734163.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LEAF 2052A-d]
 gi|312875688|ref|ZP_07735689.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LEAF 2053A-b]
 gi|325912715|ref|ZP_08175098.1| DNA topoisomerase IV, B subunit [Lactobacillus iners UPII 60-B]
 gi|329920278|ref|ZP_08277062.1| DNA topoisomerase IV, B subunit [Lactobacillus iners SPIN 1401G]
 gi|311088942|gb|EFQ47385.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LEAF 2053A-b]
 gi|311090199|gb|EFQ48609.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LEAF 2052A-d]
 gi|311091496|gb|EFQ49880.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LEAF 2062A-h1]
 gi|325478136|gb|EGC81265.1| DNA topoisomerase IV, B subunit [Lactobacillus iners UPII 60-B]
 gi|328936323|gb|EGG32771.1| DNA topoisomerase IV, B subunit [Lactobacillus iners SPIN 1401G]
          Length = 647

 Score =  584 bits (1506), Expect = e-164,   Method: Composition-based stats.
 Identities = 251/655 (38%), Positives = 357/655 (54%), Gaps = 33/655 (5%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            + ++ YD SSI+IL GLE VR RPGMYIG TD + L+HL  E++DN++DE +AGY   I
Sbjct: 2   TNLNNTYDDSSIQILHGLEAVRKRPGMYIGSTDRQGLNHLVYEILDNSVDEAMAGYGKEI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V++  +  ++V D GRG+P   H       T+E+ILT LHAGGKF    Y+ SGGLHGV
Sbjct: 62  NVTIHPDNSVSVQDFGRGMPTGMH--ASGLPTIEVILTVLHAGGKFTEKNYQTSGGLHGV 119

Query: 158 GISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           G SVVNALS+ L V V R    F ++F   G P+  L+K     +K GT ITF+PD KIF
Sbjct: 120 GSSVVNALSEWLKVRVVRDGQAFEEEFVDGGKPVGTLKKLGATSDKTGTLITFKPDSKIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                +    + +  +  A+L   V+   + +++   K      +EFY+  G+K+++   
Sbjct: 180 STTI-YKYETIQERLREAAFLLKGVRFTLTDERDPQRK------DEFYYDDGIKSFVSYL 232

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335
            E++  I    F  + E        VE++  + +   E   S+ N + T +GG+HE+G R
Sbjct: 233 NEDKDTIGDI-FYFEGEIDNI---KVEFSGQYNDGYSENVVSFVNNVRTIDGGSHEAGAR 288

Query: 336 VALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLD 391
              TR    YA+     +         D       +LSV I E   EF GQTK KL +  
Sbjct: 289 SGFTRAFNDYAKKQGLLKTKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQ 348

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR--L 449
           A+  V+N + +   +YL++N   A KL++      E R   +K R+ +R    RK +  L
Sbjct: 349 ARSVVDNIIYEQLSYYLMENGEFAQKLVQKAQRAREAREAAKKARDESRSGKKRKKKEVL 408

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
            GKL           ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + I  
Sbjct: 409 SGKLTPAQSRNPEKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKARLQDIFK 468

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N++I  ++  +G      +   D  Y K+IIMTDAD DGAHI  LLLTFFY+ M  +IE 
Sbjct: 469 NEEINTMIHTIGAGVGPDFEIADANYNKIIIMTDADTDGAHIQILLLTFFYRYMKPMIEA 528

Query: 570 KHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
             +++  PPL+++ +G     +  Y+  +E  QK ++EF K       + RFKGLGEM A
Sbjct: 529 GRVYIALPPLYKLEKGQGKNVEIKYSWTDEELQKDVKEFGK----GYSLQRFKGLGEMNA 584

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            QL ET M+ N RTL+RV+I+         +  +  LMG K   R K+I E   F
Sbjct: 585 DQLWETTMNPNTRTLIRVKIDD----AALAERRVTTLMGDKVAARRKWIDENVKF 635


>gi|300811991|ref|ZP_07092447.1| DNA gyrase, B subunit [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300497017|gb|EFK32083.1| DNA gyrase, B subunit [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 653

 Score =  584 bits (1506), Expect = e-164,   Method: Composition-based stats.
 Identities = 253/660 (38%), Positives = 373/660 (56%), Gaps = 20/660 (3%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
             A   +  +D Y+AS I++L GLE VR RPGMYIG T  + LHHL  E+IDN +DE +A
Sbjct: 9   KKAKQFEREADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNGIDEALA 68

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+A  IEV+++ +  +TV D+GRGIPV+   K   +  +E + T LHAGGKF    Y++S
Sbjct: 69  GFATKIEVTVNEDNSVTVQDDGRGIPVDI-EKKTGRPAVETVYTVLHAGGKFGGGGYKVS 127

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFR 210
           GGLHGVG SVVNALS +L+VTV R    +   F  G  +  L++   V   + GT + F 
Sbjct: 128 GGLHGVGASVVNALSTKLNVTVMRDGKKYHIAFDHGRVVEELKEVGTVPLTEHGTIVHFW 187

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PDP IF +   FD   L    +  A+L+  +K  ++  ++        E + ++F GG+K
Sbjct: 188 PDPNIFTETTVFDDKILKNRIRELAFLNKGLKLTFTDKRKD-----TAETDVYHFEGGIK 242

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            Y+      + ++  E    + + +G     VE ++ +       + ++ N I T EGG 
Sbjct: 243 EYVSFLNRGQEVLFDEPIYVEGKYEGI---DVEVSLQYTTGYKTTLMTFANNIHTYEGGM 299

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           HE+G + ALTR +  YA   +   +   ++  +D+      ++SV    P+F GQTKTKL
Sbjct: 300 HEAGFKTALTRVVNDYAHKAKILKENDDNLSGEDIREGMTAVISVKHPNPQFEGQTKTKL 359

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRK 446
            + DA+  V+ A  + F  +L++NP  A K++E   +        +R +    +K+ +  
Sbjct: 360 GNSDARTAVDRAFSETFSTFLMENPQVARKIVEKGQLAERARVAAKRAREVTRKKSGLEI 419

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLAD + N  + +ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++
Sbjct: 420 ANLPGKLADNTSNDPNISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDR 479

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           I  NQ+I  LV ALG    + +     RY K+IIMTDADVDGAHI +LLLT FY+ M  +
Sbjct: 480 ILANQEIRTLVTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPM 539

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           I++ ++++  PPL+++ QG    Y   +E     L   +     K  + R+KGLGEM A 
Sbjct: 540 IDKGYVYIARPPLYQVRQGKLIKYLDTDEELHDYLGSLQPS--PKPIVQRYKGLGEMDAE 597

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           QL ET MD   R L RV    D    KD  +    LMG +   R KFI++ A +++++  
Sbjct: 598 QLWETTMDPENRRLDRV----DPGYAKDADEVFEMLMGNEVGPRRKFIEDNAQYVENLDA 653


>gi|34580748|ref|ZP_00142228.1| DNA gyrase subunit B [Rickettsia sibirica 246]
 gi|28262133|gb|EAA25637.1| DNA gyrase subunit B [Rickettsia sibirica 246]
          Length = 662

 Score =  584 bits (1506), Expect = e-164,   Method: Composition-based stats.
 Identities = 337/661 (50%), Positives = 454/661 (68%), Gaps = 14/661 (2%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +    N+   +NY A  I +LEGLEPVR RPGMYIGGTD  A+HHL SEV+DNAMDE +A
Sbjct: 8   NKEKKNKLVDNNYSAKDIEVLEGLEPVRKRPGMYIGGTDSNAMHHLVSEVLDNAMDEAVA 67

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+A++I +++  +  +T+ DNGRGIP++NHPKFP+KS LE+ILTTLH+GGKF N+ Y  +
Sbjct: 68  GFASIITITMHHDHSITIFDNGRGIPIDNHPKFPDKSALEVILTTLHSGGKFSNNVYHTA 127

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVGISVVNALS  L + V +Q  ++SQ +S+G  L+ L  +E  +  RGT I F P
Sbjct: 128 GGLHGVGISVVNALSKHLEIKVYKQGKLYSQSYSKGEKLTDLICEEASKRLRGTSINFTP 187

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           DP+IF +K  F+  ++ ++ +SKAYL   V   W+C+ E+  +  IP+K    FP GLK 
Sbjct: 188 DPEIFSEKLHFNPKKIYELARSKAYLYRGVTIEWACEVEV--QSDIPKKALISFPNGLKD 245

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT--SYCNTILTDEGGT 329
           YL +K+   +L+   IF G  E   + R  +EWAI W   +      SYCNT+ T +GGT
Sbjct: 246 YLSSKITLDNLVIPGIFAGNIES-TSDRIKLEWAICWQNNDSSAFVQSYCNTVPTPQGGT 304

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           HE GL+ A+ RG+K Y E+  NK+A ++  +D++ +A  +LS+FI EP F GQTK KLVS
Sbjct: 305 HEQGLKSAILRGLKAYGEMIGNKKAANLTIEDILETASVVLSIFIAEPSFQGQTKEKLVS 364

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
               + VEN ++D FDH+L  +   AT LLE VI  +E R+ ++ ++ ++RK A +KLRL
Sbjct: 365 NGVSKPVENIIKDHFDHFLSSDKALATNLLEHVISIAEFRISKKNEKNISRKNATQKLRL 424

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC++    GTELFIVEGDSAGGSAKQARNR  QAVLPL GK+LNVAS+  EKI N
Sbjct: 425 PGKLADCTRTSPEGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSTLEKIVN 484

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           NQ I DL  AL C +   Y++E+LRYEK+IIMTDADVDGAHIASLL+TFF+  M  L+E+
Sbjct: 485 NQAIQDLEIALACGSLKNYKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEE 544

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
            HL+L  PPL+R+TQ  K+ YA DEE K K+ ++  K  K KIE+ RFKGLGEM+ +QLK
Sbjct: 545 GHLYLAKPPLYRLTQSNKTYYAGDEEEKAKLTDKLLKASKAKIEVGRFKGLGEMMPAQLK 604

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA-----SFIDDV 684
           ET M   KR+LL+V +       ++    ++ LMG K ++RF+FI E+A       I ++
Sbjct: 605 ETTMHPEKRSLLKVTL----ADFQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIISEL 660

Query: 685 G 685
            
Sbjct: 661 D 661


>gi|291320739|ref|YP_003516004.1| DNA gyrase subunit B [Mycoplasma agalactiae]
 gi|290753075|emb|CBH41051.1| DNA gyrase subunit B [Mycoplasma agalactiae]
          Length = 655

 Score =  584 bits (1506), Expect = e-164,   Method: Composition-based stats.
 Identities = 256/665 (38%), Positives = 363/665 (54%), Gaps = 25/665 (3%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
           +S    NQS +++Y+ASSIR+LEGLE VR+RPGMYIG   +K LHHL  E++DN++DE +
Sbjct: 5   ESTNQDNQSKNNSYNASSIRVLEGLEAVRVRPGMYIGTITDKGLHHLVWEIVDNSVDECM 64

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AGYAN I++++  +G++ + DNGRGIPV  HP+    ST+E +LT LHAGGKFD+  Y++
Sbjct: 65  AGYANFIKITICKDGYIEIEDNGRGIPVAKHPQ-TGLSTVETVLTVLHAGGKFDSDAYKV 123

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK--RGTRIT 208
           SGGLHGVG SVVNALS + HV V R+   +   F  G             +    GT+I 
Sbjct: 124 SGGLHGVGASVVNALSSDFHVWVKREGHTYYAHFQNGGQTVQPLTVINDIDPSETGTKIK 183

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F PD  I      F    +    +  AYL+   +     +            EEFY+ GG
Sbjct: 184 FHPDFSILEKHP-FSVEAITDHAKRIAYLTKGTRLVVVDEINNT-------SEEFYYEGG 235

Query: 269 LKTYLQTKLENRSLISSEIFTGKT---EKKGTHRGTVEWAIAWCEENPEI-TSYCNTILT 324
           L  Y+    E + L+   I   +      K   + TVE A+ +        T+Y N I+T
Sbjct: 236 LIDYVNELNEGQKLVHDSIIYAEGLYDSDKSGSKITVEVALQYTSTFQPRITTYTNNIVT 295

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQ 382
            EGGTHE G   AL+R I  YA      ++ +     +D     V I+SV   +P F GQ
Sbjct: 296 IEGGTHEQGFFDALSRLINSYALKNGLIKSENERLNKEDTSKGLVAIVSVKHPDPIFEGQ 355

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK KL + DA+  V   L    + Y  +NPI+A +++   ++  + RL      +  +  
Sbjct: 356 TKGKLNNKDARTAVREILAPVLERYFDENPIDAREIINKCLQSRKSRLAAEAAAKAVQAN 415

Query: 443 AIRKLRL--PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
                    PGKLA+C+   A   EL+IVEG+SAGGSAK  R+R+ QA+LPLRGK++N  
Sbjct: 416 MGNNSIASLPGKLANCTSKNAEICELYIVEGNSAGGSAKMGRDRNVQAILPLRGKVINAE 475

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
               E++ +N +I+ L+ ALG      +    LRY KVIIMTDADVDGAHI +LLLTFFY
Sbjct: 476 KVSPERVLSNTEIISLITALGTGLNESFDINKLRYHKVIIMTDADVDGAHIRTLLLTFFY 535

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           +    LIE   +++  PPL++I Q     YA+++  K  IL+    +   K  I R+KGL
Sbjct: 536 RYFRKLIEYGFIYIAQPPLYKIQQNKYIAYAYNDSQKDSILQSL--NQDSKFTIQRYKGL 593

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GEM   QL ET M+   R + +V+I+               LMG     R +FI++ A F
Sbjct: 594 GEMDPEQLWETTMNPENRKMYQVQIDD----AAKADWVFTTLMGDDVLPRREFIEKNAKF 649

Query: 681 IDDVG 685
           + ++ 
Sbjct: 650 VQNID 654


>gi|262200051|ref|YP_003271259.1| DNA gyrase subunit B [Gordonia bronchialis DSM 43247]
 gi|262083398|gb|ACY19366.1| DNA gyrase, B subunit [Gordonia bronchialis DSM 43247]
          Length = 685

 Score =  584 bits (1506), Expect = e-164,   Method: Composition-based stats.
 Identities = 248/696 (35%), Positives = 366/696 (52%), Gaps = 49/696 (7%)

Query: 26  SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNA 85
           +     + + +    S  Y A SI ILEGLE VR RPGMYIG T E+ LHHL  EV+DN+
Sbjct: 2   ADSKDTAGSKSKSKKSGEYSADSISILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNS 61

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AGYA+ +EV+L  +G + VVD+GRGIP + H       T+E+++T LHAGGKFD+
Sbjct: 62  VDEAMAGYASKVEVTLLEDGGVEVVDDGRGIPTDMH--ATGSPTVEVVMTQLHAGGKFDS 119

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y +SGGLHGVGISVVNALS ++ + +      + Q +    P    +       K GT
Sbjct: 120 DAYAVSGGLHGVGISVVNALSTKVELEINYGGFHWEQTYDHAKPQPLEK--GDATRKTGT 177

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------------- 249
            + F PDP+IF     F A  + +  Q  A+L+  +    +  +                
Sbjct: 178 LVRFWPDPEIFETTV-FSAETVARRLQEMAFLNKGLTITLTDKRPRAVEAPPGDANGDES 236

Query: 250 -----------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH 298
                      E  +    P+   +++P GL  Y++     +  I + +     +  G  
Sbjct: 237 VADAAETVKTEEEKKADAKPKTRTYHYPDGLVDYIKHLNRTKQPIHNSVIGFTAKGTGH- 295

Query: 299 RGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAI 355
              VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++  
Sbjct: 296 --EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLLKEKDG 353

Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415
            +  DD+      ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP EA
Sbjct: 354 KLTGDDIREGLAAVISVKVGDPQFEGQTKTKLGNTEVKGFVQKTCNEHLAHWFESNPAEA 413

Query: 416 TKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSA 474
             +++  ++ S+ RL  RK RE V RKTA     LPGKLADC  N     E++IVEGDSA
Sbjct: 414 KIIIKKAVDSSQARLAARKARELVRRKTATDIGGLPGKLADCRSNDPSKCEVYIVEGDSA 473

Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
           GGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LR
Sbjct: 474 GGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDIAKLR 533

Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKS-VYAHD 593
           Y K+++M DADVDG HI++LLLT  ++ M  LIE  H++L  PPL+++    +   +A+ 
Sbjct: 534 YHKIVLMADADVDGQHISTLLLTLLFRFMRPLIEHGHVYLAQPPLYKLKWQKREPEFAYS 593

Query: 594 EEHKQKILEEFKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDL 649
           +  +  +LE  +  G  KI     I R+KGLGEM A +L ET MD   R L +V ++   
Sbjct: 594 DRERDGLLEAGRTAG-WKINTDDGIQRYKGLGEMNAKELWETTMDPEVRVLRQVTLDD-- 650

Query: 650 NSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
                  +  + LMG     R  FI   A  +  + 
Sbjct: 651 --AAAADELFSILMGEDVAARRSFIARNAKDVRFLD 684


>gi|223984216|ref|ZP_03634364.1| hypothetical protein HOLDEFILI_01657 [Holdemania filiformis DSM
           12042]
 gi|223963831|gb|EEF68195.1| hypothetical protein HOLDEFILI_01657 [Holdemania filiformis DSM
           12042]
          Length = 638

 Score =  584 bits (1506), Expect = e-164,   Method: Composition-based stats.
 Identities = 249/651 (38%), Positives = 365/651 (56%), Gaps = 32/651 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + +  YD +SI+ILEGLE VR RPGMYIG TD + LHHL  E +DNA+DE + G+   I 
Sbjct: 2   AKTQKYDENSIQILEGLEAVRKRPGMYIGSTDSRGLHHLVWETVDNAIDEALNGFGKKIT 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN-STYEISGGLHGV 157
           ++L+ NG + V D GRG+P+  H       T+++I T LHAGGKF +   Y+ SGGLHGV
Sbjct: 62  ITLEKNGAVCVEDEGRGMPIGMH--ASGVPTIQVIFTVLHAGGKFSSEGGYKTSGGLHGV 119

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           G SVVNALS+ + VTV ++  + S +F  G   +  LEK  K     G++I F PD +IF
Sbjct: 120 GASVVNALSEWVEVTVCQEGQMVSMRFEDGGKKVGKLEKLGKSTK-TGSKIRFMPDKRIF 178

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                F+A  + +  +  A+L   +      ++         + E F++  GLK +L+  
Sbjct: 179 STI-EFNAGLICERARENAFLLKNITMVVKDERS-------GKTETFHYEDGLKAFLEYL 230

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRV 336
            E+R+++   +           +   ++     +    + S+ N + T +GGTHE G R 
Sbjct: 231 HEDRTVLHDPVVFTGMANDIEVQCAFQYTD---DYQESMVSFVNLVRTKDGGTHEMGFRT 287

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392
           A T+    YA       ++  +    D+      I+SV I E   +F GQTK KL + +A
Sbjct: 288 AFTKAFNDYARKLGLLKEKDKNFEGSDVREGLTSIVSVSIPENLLQFEGQTKGKLGTAEA 347

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---L 449
           +  VE+ + D    YL +N   +T L++ + + S+ R   RK RE  RK          L
Sbjct: 348 KSAVESLVGDKLSFYLEENKELSTMLIKKMQKASQAREAARKAREEARKGKKAGKSEKVL 407

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
            GKLA      A   ELF+VEGDSAGGSAKQ R+   QA+LPLRGK+LN   AG  +I  
Sbjct: 408 SGKLAPAQSKDASRKELFLVEGDSAGGSAKQGRDSKYQAILPLRGKVLNTEKAGLSEIEK 467

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N+++  +V ALG    S +   D  Y K+IIMTDAD DGAHI  LLLTFFY+ M  LIE 
Sbjct: 468 NEELNTIVHALGAGIGSGFDYSDSNYNKIIIMTDADTDGAHIQVLLLTFFYRYMRPLIEH 527

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
             +++  PPL+++T+G +  YA+ +E   ++ +++     GK+EI R+KGLGEM ASQL 
Sbjct: 528 GMVYIALPPLYKVTKGKQLRYAYTDEELDEVKQQW-----GKVEIQRYKGLGEMNASQLW 582

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET MD   RTL++V I   +      + +++ LMG KA+ R  +I++  +F
Sbjct: 583 ETTMDPESRTLIQVSIEDAV----QAERNVSILMGDKANLRRTWIEQNVAF 629


>gi|209559109|ref|YP_002285581.1| DNA gyrase subunit B [Streptococcus pyogenes NZ131]
 gi|209540310|gb|ACI60886.1| DNA gyrase subunit B [Streptococcus pyogenes NZ131]
          Length = 650

 Score =  584 bits (1505), Expect = e-164,   Method: Composition-based stats.
 Identities = 255/652 (39%), Positives = 376/652 (57%), Gaps = 24/652 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +     YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I
Sbjct: 9   EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHI 68

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGV
Sbjct: 69  KVFIEADNSITVVDDGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS +L V V +   I  Q+F RG  ++ LE          T + F PDP+IF 
Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVIGTTDVTG-TTVHFTPDPEIFT 186

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   FD + L K  Q  A+L+  +K   +  +   E     ++E F++ GG+ +Y++   
Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGME-----QEEHFHYEGGIGSYVEFLN 241

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           + + +I         E +G     VE A+ +       + S+ N I T EGGTHE G R 
Sbjct: 242 DKKDVIFETPIYTDGELEGI---AVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRA 298

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA+  +   +   ++  +D+      ++SV    P+F GQTKTKL + +  +
Sbjct: 299 ALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
                  + F  +L++NP  A K++E  I  S+ R+  ++ RE   +K+ +    LPGKL
Sbjct: 359 ITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS N A+  ELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I
Sbjct: 419 ADCSSNDANQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 478

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             L  A+G    + +     RY+K++IMTDADVDGAHI +LLLT  Y+ M  ++E  +++
Sbjct: 479 RSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVY 538

Query: 574 LISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           +  PP++ +  G++   Y       E+  +  LE++   G+ K  + R+KGLGEM   QL
Sbjct: 539 IAQPPIYGVKVGSEIKEYIQPGIDQEDQLKTALEKYS-IGRSKPTVQRYKGLGEMDDHQL 597

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET MD   R + RV ++       +     + LMG + + R  FI+E A +
Sbjct: 598 WETTMDPENRLMARVTVDD----AAEADKVFDMLMGDRVEPRRDFIEENAVY 645


>gi|209544317|ref|YP_002276546.1| DNA topoisomerase IV subunit B [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209531994|gb|ACI51931.1| DNA topoisomerase IV, B subunit [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 678

 Score =  584 bits (1505), Expect = e-164,   Method: Composition-based stats.
 Identities = 348/686 (50%), Positives = 462/686 (67%), Gaps = 15/686 (2%)

Query: 5   SIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGM 64
           + DLFS   P+ +        +   P         A   YDAS+I +LEGLEPVR RPGM
Sbjct: 2   NDDLFSAARPKREPRGRAAASAPPAPV-----RDDAGGEYDASAIEVLEGLEPVRRRPGM 56

Query: 65  YIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKF 124
           YIGGTDE A HHL SE++DNAMDE +AG+A  I+V+L+   +LT+ DNGRGIPV+ HPKF
Sbjct: 57  YIGGTDEGAYHHLASEILDNAMDEAVAGHATTIDVTLEAGDWLTIRDNGRGIPVDPHPKF 116

Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184
            ++S LE+ILTTLHAGGKF    Y  SGGLHGVG SVVNAL+  + V VAR   ++ Q +
Sbjct: 117 KDRSALEVILTTLHAGGKFSGKAYATSGGLHGVGSSVVNALAARMEVEVARDRAVWRQVY 176

Query: 185 SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244
            RG P++ LEK    +N+RGT+I F PDP+IFG    F  ARL ++ +SKAYL   V   
Sbjct: 177 ERGHPVTVLEKVGATQNRRGTQIRFTPDPQIFGRIH-FSPARLYRLCRSKAYLFRGVTIR 235

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----KKGTHRG 300
           WSCD  +     IP +   +FPGGL   L+ +L N + + +E+++G+ +      G   G
Sbjct: 236 WSCDPALVRDADIPAEAVLHFPGGLADSLRDELGNAA-LLTEMWSGEADLPVGPDGADTG 294

Query: 301 TVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359
            +EWA+A+ E       SYCNTI T +GGTHE+G R AL +G + + E   NKRA ++ +
Sbjct: 295 RMEWAVAFLESGSASLSSYCNTIPTPQGGTHEAGFRAALLKGFRAWGEQRSNKRAAAVNA 354

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD++ +    LSVFIR+P+F GQTK KL S +A R +E ALRD F+ +L  +P +A  LL
Sbjct: 355 DDVLGAIAAKLSVFIRDPQFQGQTKEKLTSSEASRLIETALRDRFEQWLAGHPAQADNLL 414

Query: 420 EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
            ++IER+EERLRR+  ++  RK+A R+LRLPGKL DC++  A  TE+F+VEGDSAGGSAK
Sbjct: 415 AFIIERAEERLRRKDLKDTPRKSATRRLRLPGKLTDCTRENAAETEIFLVEGDSAGGSAK 474

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
           QARNR  QAVLPLRGKILNVASA +EK+R NQ++ DLV+ALGC    ++    LRY +++
Sbjct: 475 QARNRETQAVLPLRGKILNVASASTEKLRANQELRDLVEALGCGIGERFDATRLRYGRIV 534

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599
           IMTDADVDGAHIASLL+TFFY+E+ DLI Q HL+L  PPL+R+TQG K++YA D+  +++
Sbjct: 535 IMTDADVDGAHIASLLMTFFYRELPDLIRQGHLYLAQPPLYRLTQGGKTIYAMDDTDRER 594

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
            L+   K    K+E+SRFKGLGEM    LK+T MD   RTLL+V           T D +
Sbjct: 595 KLKSNFK-PNAKVEVSRFKGLGEMPPGDLKQTTMDPRHRTLLKVV--TRPEDRALTSDRV 651

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
             LMG + + RF+FIQE A  ++D+ 
Sbjct: 652 EHLMGRRPELRFQFIQEHAQTVEDLD 677


>gi|87200102|ref|YP_497359.1| DNA topoisomerase IV subunit B [Novosphingobium aromaticivorans DSM
           12444]
 gi|87135783|gb|ABD26525.1| DNA topoisomerase IV subunit B [Novosphingobium aromaticivorans DSM
           12444]
          Length = 666

 Score =  584 bits (1505), Expect = e-164,   Method: Composition-based stats.
 Identities = 349/654 (53%), Positives = 450/654 (68%), Gaps = 10/654 (1%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
              SA++ YD S+I +LEGLEPVR RPGMYIGGTDE+ALHHL +EV+DNAMDE +AG+AN
Sbjct: 10  PATSAAEAYDGSAIEVLEGLEPVRRRPGMYIGGTDERALHHLAAEVLDNAMDEAVAGHAN 69

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            IEV L+    LT+ DNGRGIPV+ HPK+P KS LE+ILTTLH+GGKF    Y  SGGLH
Sbjct: 70  RIEVLLEEGNRLTISDNGRGIPVDEHPKYPGKSALEVILTTLHSGGKFSGKAYATSGGLH 129

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS    V VAR   +++Q+FSRG P + L K     N+RGT++TF PD +I
Sbjct: 130 GVGVSVVNALSSLTRVEVARNKELYAQEFSRGNPTTKLMKVGNAPNRRGTQVTFIPDTEI 189

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           FG+ A F  ARL ++ +SKAYL   V+  W C+  +A    +P +  F FPGGL  +L  
Sbjct: 190 FGEDAKFKPARLFRLVRSKAYLFAGVEIRWKCEPSLASDD-VPAEAVFQFPGGLADHLAE 248

Query: 276 KLENRSLISSEIFTGKTE----KKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTH 330
           ++  R  ++S  F G+ +      G   G VEWAIAW    +   + YCNTI T +GGTH
Sbjct: 249 QVSGRECVTSVPFAGRQDFPLGPDGEEMGRVEWAIAWPLWSDGSYSWYCNTIPTPDGGTH 308

Query: 331 ESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           E GLR ALT+GI+ +A+L   K+A  I  +D++  +  +LSVFIR+P+F  QTK +L S 
Sbjct: 309 EQGLRAALTKGIRAFADLIGQKKAKDIAPEDMITGSEIMLSVFIRDPQFQSQTKDRLTSP 368

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLR 448
           +A R VE A+RD FDH+L  N      LL  V+ER +ERLRR+ +REV RKTA   RKLR
Sbjct: 369 EAARMVEAAVRDHFDHFLTDNMERGKALLGAVMERMDERLRRKAEREVKRKTATNARKLR 428

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKL DCS   +  TELFIVEGDSAGGSAKQAR+R  QA+LP+RGKILNVASA ++KIR
Sbjct: 429 LPGKLTDCSGEGSGETELFIVEGDSAGGSAKQARDRKTQAILPIRGKILNVASATADKIR 488

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            NQ+I DL  ALGC  R     + LRY++VIIMTDADVDGAHIA+LL+TFF+QEM +L+ 
Sbjct: 489 ANQEIADLALALGCGMRKDCNPDALRYDRVIIMTDADVDGAHIATLLMTFFFQEMPELVR 548

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           + HL+L  PPL+R+T G+ S YA D+ H+ ++  E  K    K+E+ RFKGLGEM   QL
Sbjct: 549 RGHLYLAQPPLYRLTSGSTSAYAKDDAHRAEL--EATKFKGKKVEVGRFKGLGEMNPQQL 606

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           +ET M    R+L+R+ +  +       +D +++LMG    +RF FIQ RAS ID
Sbjct: 607 RETTMAPATRSLIRITLPPEYEGRAAVKDLVDRLMGRDPAQRFMFIQNRASEID 660


>gi|259500636|ref|ZP_05743538.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus iners DSM
           13335]
 gi|259168020|gb|EEW52515.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus iners DSM
           13335]
          Length = 654

 Score =  584 bits (1505), Expect = e-164,   Method: Composition-based stats.
 Identities = 251/655 (38%), Positives = 357/655 (54%), Gaps = 33/655 (5%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            + ++ YD SSI+IL GLE VR RPGMYIG TD + L+HL  E++DN++DE +AGY   I
Sbjct: 9   TNLNNTYDDSSIQILHGLEAVRKRPGMYIGSTDRQGLNHLVYEILDNSVDEAMAGYGKEI 68

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V++  +  ++V D GRG+P   H       T+E+ILT LHAGGKF    Y+ SGGLHGV
Sbjct: 69  NVTIHPDNSVSVQDFGRGMPTGMH--ASGLPTIEVILTVLHAGGKFTEKNYQTSGGLHGV 126

Query: 158 GISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           G SVVNALS+ L V V R    F ++F   G P+  L+K     +K GT ITF+PD KIF
Sbjct: 127 GSSVVNALSEWLKVRVVRDGQAFEEEFVDGGKPVGTLKKLGATSDKTGTLITFKPDSKIF 186

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                +    + +  +  A+L   V+   + +++   K      +EFY+  G+K+++   
Sbjct: 187 STTI-YKYETIQERLREAAFLLKGVRFTLTDERDPQRK------DEFYYDDGIKSFVSYL 239

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335
            E++  I    F  + E        VE++  + +   E   S+ N + T +GG+HE+G R
Sbjct: 240 NEDKDTIGDI-FYFEGEIDNI---KVEFSGQYNDGYSENVVSFVNNVRTIDGGSHEAGAR 295

Query: 336 VALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLD 391
              TR    YA+     +         D       +LSV I E   EF GQTK KL +  
Sbjct: 296 SGFTRAFNDYAKKQGLLKTKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQ 355

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR--L 449
           A+  V+N + +   +YL++N   A KL++      E R   +K R+ +R    RK +  L
Sbjct: 356 ARSVVDNIIYEQLSYYLMENGEFAQKLVQKAQRAREAREAAKKARDESRSGKKRKKKEVL 415

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
            GKL           ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + I  
Sbjct: 416 SGKLTPAQSRNPEKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKARLQDIFK 475

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N++I  ++  +G      +   D  Y K+IIMTDAD DGAHI  LLLTFFY+ M  +IE 
Sbjct: 476 NEEINTMIHTIGAGVGPDFEIADANYNKIIIMTDADTDGAHIQILLLTFFYRYMKPMIEA 535

Query: 570 KHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
             +++  PPL+++ +G     +  Y+  +E  QK ++EF K       + RFKGLGEM A
Sbjct: 536 GRVYIALPPLYKLEKGQGKNVEIKYSWTDEELQKDVKEFGK----GYSLQRFKGLGEMNA 591

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            QL ET M+ N RTL+RV+I+         +  +  LMG K   R K+I E   F
Sbjct: 592 DQLWETTMNPNTRTLIRVKIDD----AALAERRVTTLMGDKVAARRKWIDENVKF 642


>gi|261338542|ref|ZP_05966426.1| DNA gyrase, B subunit [Bifidobacterium gallicum DSM 20093]
 gi|270276563|gb|EFA22417.1| DNA gyrase, B subunit [Bifidobacterium gallicum DSM 20093]
          Length = 706

 Score =  584 bits (1505), Expect = e-164,   Method: Composition-based stats.
 Identities = 254/712 (35%), Positives = 372/712 (52%), Gaps = 32/712 (4%)

Query: 1   MTDDSIDLFST----LPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLE 56
           M D + D             Q   E      E   S    +  + D+YDAS +R+LEGLE
Sbjct: 1   MADLASDSLPESNELTDSTPQAPVEAPGAVSEETQSAQLDDTLSPDHYDASDLRVLEGLE 60

Query: 57  PVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGI 116
            VR+RPGMYIG T  + LHHL  E++DN++DE +AGYA+ IEV++  +  + VVD+GRGI
Sbjct: 61  AVRIRPGMYIGSTGPRGLHHLVYEIVDNSVDEALAGYASHIEVTILPDNGIRVVDDGRGI 120

Query: 117 PVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQ 176
           PV+  P     S +E ++T LHAGGKF    Y +SGGLHGVGISVVNALS  + + V RQ
Sbjct: 121 PVDEVP-GEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQ 179

Query: 177 NTIFSQKFSRGIPLSPLEKKEKVRNK--RGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
             +++Q +    P +PL++   +R+    GT +TF PD +IF     +D   L    Q  
Sbjct: 180 GYVWTQTYIDQHPTAPLKQGRPMRDDESTGTSVTFWPDAQIFETTI-YDFETLRSRFQQM 238

Query: 235 AYLSGRVKTCWSCDKEIA-----------EKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
           A+L+  +K   +  +E             +     +   + +  G+K Y++  ++ R   
Sbjct: 239 AFLNKGLKISLTDMREPDLAGDEVAGDEAQDKPEHQSVTYQYLNGIKDYVEFLVKTRKST 298

Query: 284 SSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
             E      E +  +   + E A+ W       + ++ NTI T EGGTHE G R ALT  
Sbjct: 299 PVEPDVIDFEAEDLSIGISAEIAMQWTTAYSESVHTFANTISTTEGGTHEEGFRTALTSL 358

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + KYA        +  ++  DD+      ++SV +  P+F GQTKTKL + +A+  V   
Sbjct: 359 VNKYAREKNILKDKDDNLSGDDVREGLTAVISVKLTNPQFEGQTKTKLGNSEARAFVIRV 418

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQ 458
           + D    +   +P E   +++  IE S  RL  +K RE  R+ +I     +P KL DC  
Sbjct: 419 MNDKLSDWADAHPNEMKSIIQKAIEASRARLAAKKARENTRRKSIFESAGMPDKLKDCQS 478

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
           N     ELFIVEGDSAGGSA Q RN   QA+LPLRGKILN   A  +++  +  I  L+ 
Sbjct: 479 NDPAECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSDTIESLIT 538

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+G      +  + +RY KVIIM DADVDGAHIA+L LT F++ M  +I   ++++  PP
Sbjct: 539 AVGGGYGEDFNLDKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPP 598

Query: 579 LFRITQGTKSV-YAHDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMD 634
           L+R+        + + +  + ++L E +  G+       I R+KGLGEM   +L ET MD
Sbjct: 599 LYRLKWTKGPHDFVYTDAERDRVLAEGRAAGRQLPKGEGIQRYKGLGEMSYQELWETTMD 658

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
              R L +V I   L       ++ + LMG + + R  FIQ  A     +  
Sbjct: 659 PEHRILKQVHIEDAL----QADETFSMLMGDEVEPRRLFIQRNAHNAKWIDA 706


>gi|169627114|ref|YP_001700763.1| DNA gyrase subunit B [Mycobacterium abscessus ATCC 19977]
 gi|169239081|emb|CAM60109.1| DNA gyrase (subunit B) GyrB (DNA topoisomerase) [Mycobacterium
           abscessus]
          Length = 675

 Score =  584 bits (1505), Expect = e-164,   Method: Composition-based stats.
 Identities = 247/686 (36%), Positives = 371/686 (54%), Gaps = 47/686 (6%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A   +SA   Y A SI ILEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +AGY
Sbjct: 2   AAQKKSAKSEYSADSITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNSVDEAMAGY 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A  +EV++  +G + V D+GRGIPV  H       T+++++T LHAGGKFD+ +Y +SGG
Sbjct: 62  ATTVEVTMLADGGIQVKDDGRGIPVAMH--ASGIPTVDVVMTQLHAGGKFDSDSYAVSGG 119

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVGISVVNALS +L V + R    + Q ++R  P +  +       K GT + F  DP
Sbjct: 120 LHGVGISVVNALSTKLEVEILRDGFEWQQVYTRSEPGTLQK--GAATKKTGTTVRFWADP 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK------------------- 254
           +IF     +D   + +  Q +A+L+  +    + ++    +                   
Sbjct: 178 EIFET-TTYDFETVARRLQEQAFLNKGLTIKLTDERVSDSEVTDEVVSDTAEAPKNAEEQ 236

Query: 255 ------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
                     +   F++P GL  +++     +S I + I     + +G     VE A+ W
Sbjct: 237 AAESSAPHKVKNRVFHYPDGLVDFVKHINRTKSAIHTTIVDFSGKGEGH---EVEIAMQW 293

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMIS 365
                  + ++ NTI T EGGTHE G R ALT  + KY   +    ++  ++  DD+   
Sbjct: 294 NAGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKEKKLLKEKDSNLTGDDIREG 353

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  ++   +  
Sbjct: 354 LAAVISVKVGEPQFEGQTKTKLGNTEVKSFVQKVCNEQLQHWFDSNPADAKTVVNKAVSS 413

Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGGSAK  R+ 
Sbjct: 414 AQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKSGRDS 473

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY K+++M DA
Sbjct: 474 MFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIAKLRYHKIVLMADA 533

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603
           DVDG HI++LLLT  ++ M  L+E  H+FL  PPL+++     +  +A+ +  +  ++E 
Sbjct: 534 DVDGQHISTLLLTLLFRFMRPLVEHGHIFLAQPPLYKLKWQRTQPEFAYSDRERDGLMEA 593

Query: 604 FKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
             K GK KI     I R+KGLGEM A +L ET MD + R L +V ++          +  
Sbjct: 594 GLKAGK-KINKDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELF 648

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
           + LMG   + R  FI   A  +  + 
Sbjct: 649 SILMGEDVEARRSFITRNAKDVRFLD 674


>gi|94994032|ref|YP_602130.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS10750]
 gi|94547540|gb|ABF37586.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS10750]
          Length = 650

 Score =  584 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 255/652 (39%), Positives = 375/652 (57%), Gaps = 24/652 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +     YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I
Sbjct: 9   EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHI 68

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGV
Sbjct: 69  KVFIEADNSITVVDDGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS +L V V +   I  Q+F RG  ++ LE          T + F PDP+IF 
Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVIGTTDVTG-TTVHFTPDPEIFT 186

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   FD   L K  Q  A+L+  +K   +  +   E     ++E F++ GG+ +Y++   
Sbjct: 187 ETTQFDYNVLAKRIQELAFLNRGLKISITDKRSGME-----QEEHFHYEGGIGSYVEFLN 241

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           + + +I         E +G     VE A+ +       + S+ N I T EGGTHE G R 
Sbjct: 242 DKKDVIFETPIYTDGELEGI---AVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRA 298

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA+  +   +   ++  +D+      ++SV    P+F GQTKTKL + +  +
Sbjct: 299 ALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
                  + F  +L++NP  A K++E  I  S+ R+  ++ RE   +K+ +    LPGKL
Sbjct: 359 ITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS N A+  ELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I
Sbjct: 419 ADCSSNDANQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 478

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             L  A+G    + +     RY+K++IMTDADVDGAHI +LLLT  Y+ M  ++E  +++
Sbjct: 479 RSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVY 538

Query: 574 LISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           +  PP++ +  G++   Y       E+  +  LE++   G+ K  + R+KGLGEM   QL
Sbjct: 539 IAQPPIYGVKVGSEIKEYIQPGIDQEDQLKTALEKYS-IGRSKPTVQRYKGLGEMDDHQL 597

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET MD   R + RV ++       +     + LMG + + R  FI+E A +
Sbjct: 598 WETTMDPENRLMARVTVDD----AAEADKVFDMLMGDRVEPRRDFIEENAVY 645


>gi|157828185|ref|YP_001494427.1| DNA topoisomerase IV subunit B [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165932887|ref|YP_001649676.1| DNA topoisomerase IV subunit B [Rickettsia rickettsii str. Iowa]
 gi|157800666|gb|ABV75919.1| DNA topoisomerase IV subunit B [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165907974|gb|ABY72270.1| topoisomerase IV subunit B [Rickettsia rickettsii str. Iowa]
          Length = 662

 Score =  584 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 335/661 (50%), Positives = 450/661 (68%), Gaps = 14/661 (2%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +    N+   +NY A  I +LEGLEPVR RPGMYIGGTD  A+HHL SEV+DNAMDE +A
Sbjct: 8   NKEKKNKLVDNNYSAKDIEVLEGLEPVRKRPGMYIGGTDSNAMHHLVSEVLDNAMDEAVA 67

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+A++I + +  +  +T+ DNGRGIP++NHPKFP+KS LE+ILTTLH+GGKF N+ Y  +
Sbjct: 68  GFASIITIKMHHDHSITIFDNGRGIPIDNHPKFPDKSALEVILTTLHSGGKFSNNVYHTA 127

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVGISVVNALS  L + V +Q  ++SQ +S+G  L+ L  +E     RGT I F P
Sbjct: 128 GGLHGVGISVVNALSKHLEIKVYKQGKLYSQSYSKGEKLTDLICEEASTRLRGTSINFTP 187

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           DP+IF +   F+  ++ ++ +SKAYL   V   W C+ E+  +  IP+K    FP GLK 
Sbjct: 188 DPEIFSETLHFNPKKIYELARSKAYLYRGVTIEWVCEVEV--QSDIPKKALISFPNGLKD 245

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT--SYCNTILTDEGGT 329
           YL +K+   +L+   IF G  E   + R  +EWAI W   +      SYCNT+ T +GGT
Sbjct: 246 YLSSKITLDNLVIPGIFAGNIES-TSDRIKLEWAICWQNNDSSAFVQSYCNTVPTPQGGT 304

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           HE GL+ A+ RG+K Y E+  NK+A ++  +D++ +   +LS+FI EP F GQTK KLVS
Sbjct: 305 HEQGLKSAILRGLKAYGEMIGNKKAANLTIEDILETTSVVLSIFIAEPSFQGQTKEKLVS 364

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
               + VEN ++D FDH+L  +   AT LLE VI  +E R+ ++ ++ ++RK A +KLRL
Sbjct: 365 NGVSKPVENIIKDHFDHFLSSDKALATNLLEHVISIAEFRISKKNEKNISRKNATQKLRL 424

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC++    GTELFIVEGDSAGGSAKQARNR  QAVLPL GK+LNVAS+  EKI N
Sbjct: 425 PGKLADCTRTSPEGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSTLEKIVN 484

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           NQ I DL  AL C +   Y++E+LRYEK+IIMTDADVDGAHIASLL+TFF+  M  L+E+
Sbjct: 485 NQAIQDLEIALACGSLKNYKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEE 544

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
            HL+L  PPL+R+TQ  K+ YA DEE K K+ ++  K  K KIE+ RFKGLGEM+ +QLK
Sbjct: 545 GHLYLAKPPLYRLTQSNKTYYAGDEEEKAKLTDKLLKASKAKIEVGRFKGLGEMMPAQLK 604

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA-----SFIDDV 684
           ET M   KR+LL+V +      +++    ++ LMG K ++RF+FI E+A       I ++
Sbjct: 605 ETTMHPEKRSLLKVTLED----VQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIISEL 660

Query: 685 G 685
            
Sbjct: 661 D 661


>gi|292655722|ref|YP_003535619.1| DNA gyrase subunit B [Haloferax volcanii DS2]
 gi|302425107|sp|D4GZ01|GYRB_HALVD RecName: Full=DNA gyrase subunit B
 gi|291372625|gb|ADE04852.1| DNA gyrase subunit B [Haloferax volcanii DS2]
          Length = 639

 Score =  584 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 250/655 (38%), Positives = 366/655 (55%), Gaps = 26/655 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           S  + Y A  I++LEGLE VR RP MYIG TD + LHHL  EV+DN++DE +AG+ + IE
Sbjct: 2   SQDNEYGAGQIQVLEGLEAVRKRPAMYIGSTDSRGLHHLVYEVVDNSIDEALAGHCDAIE 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+L  +G ++V DNGRGIPV+ H ++ ++  LE+I+T LHAGGKFDN +Y++SGGLHGVG
Sbjct: 62  VALHEDGSVSVTDNGRGIPVDTHEQY-DRPALEVIMTVLHAGGKFDNKSYQVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE---KVRNKRGTRITFRPDPKI 215
           +SVVNALS EL V V R   +++ +F  G P     ++    +     GT I F PD  I
Sbjct: 121 VSVVNALSSELEVEVKRDGAVWTHRFEVGEPQVEEFERVRDLEPGEDTGTTIRFWPDDGI 180

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     FD   L    +  A+L+  V+   S ++         E   F F GG++ +++ 
Sbjct: 181 FET-TEFDFKTLENRLRELAFLNSGVEISLSDER-------TDESSTFLFEGGIREFVEY 232

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHESGL 334
             E ++ +  ++     E +G     VE A+   +E    I ++ N I T EGGTH +G 
Sbjct: 233 LNETKTALHDDVIYYDDESEGI---EVEIAMQATDELQGSIHAFANNINTREGGTHLTGF 289

Query: 335 RVALTRGIKKYAELTQNKRA---ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           + ALTR +  YA            ++  +D+      ++S+   +P+F GQTKTKL + +
Sbjct: 290 KTALTRVVNDYANTHDMLDDLDGDNLRGEDVREGLTAVISIKHPDPQFEGQTKTKLGNSE 349

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE+        +  +NP  AT ++   +E +  R   ++  E   RK+A+    LP
Sbjct: 350 VRGIVESVTHQQLGTFFEENPDTATAIISKAVEAARARKAAKQAEELTRRKSALESTSLP 409

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC       +ELFIVEGDSAGGSAKQ R+R  QA+LPL+GKILNV     ++I  N
Sbjct: 410 GKLADCQSRDPAESELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKHRLDRILEN 469

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
            +I  L+ A+G     ++  E  RY+++I+MTDADVDGAHI +LLLT  Y+ M  LIE  
Sbjct: 470 DEIRALITAIGGGVGDEFDIEKARYQRLILMTDADVDGAHIRTLLLTLLYRHMRPLIEAG 529

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           +++   PPL+R+     +  A DE  + +I+EE         ++ RFKGLGEM   QL +
Sbjct: 530 YVYAAQPPLYRVRYRGNTYDAMDEAERDRIIEEECNGNPT--QVQRFKGLGEMNPDQLWD 587

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T M+   R L R+ +              N LMG     R +FI++ A+  + V 
Sbjct: 588 TTMNPENRVLKRITVED----AAAADRMFNILMGDAVGPRKQFIKDHANDAEWVD 638


>gi|19745824|ref|NP_606960.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS8232]
 gi|50913919|ref|YP_059891.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS10394]
 gi|73919730|sp|Q5XD05|GYRB_STRP6 RecName: Full=DNA gyrase subunit B
 gi|73919731|sp|Q8P1M4|GYRB_STRP8 RecName: Full=DNA gyrase subunit B
 gi|19747970|gb|AAL97459.1| putative DNA gyrase, subunit B [Streptococcus pyogenes MGAS8232]
 gi|50902993|gb|AAT86708.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS10394]
          Length = 650

 Score =  584 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 255/652 (39%), Positives = 376/652 (57%), Gaps = 24/652 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +     YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I
Sbjct: 9   EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHI 68

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGV
Sbjct: 69  KVFIEADNSITVVDDGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS +L V V +   I  Q+F RG  ++ LE          T + F PDP+IF 
Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEIIGTTDVTG-TTVHFTPDPEIFT 186

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   FD + L K  Q  A+L+  +K   +  +   E     ++E F++ GG+ +Y++   
Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGME-----QEEHFHYEGGIGSYVEFLN 241

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           + + +I         E +G     VE A+ +       + S+ N I T EGGTHE G R 
Sbjct: 242 DKKDVIFETPIYTDGELEGI---AVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRA 298

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA+  +   +   ++  +D+      ++SV    P+F GQTKTKL + +  +
Sbjct: 299 ALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
                  + F  +L++NP  A K++E  I  S+ R+  ++ RE   +K+ +    LPGKL
Sbjct: 359 ITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS N A+  ELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I
Sbjct: 419 ADCSSNDANQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 478

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             L  A+G    + +     RY+K++IMTDADVDGAHI +LLLT  Y+ M  ++E  +++
Sbjct: 479 RSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVY 538

Query: 574 LISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           +  PP++ +  G++   Y       E+  +  LE++   G+ K  + R+KGLGEM   QL
Sbjct: 539 IAQPPIYGVKVGSEIKEYIQPGIDQEDQLKTALEKYS-IGRSKPTVQRYKGLGEMDDHQL 597

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET MD   R + RV ++       +     + LMG + + R  FI+E A +
Sbjct: 598 WETTMDPENRLMARVTVDD----AAEADKVFDMLMGDRVEPRRDFIEENAVY 645


>gi|312871805|ref|ZP_07731893.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LEAF 3008A-a]
 gi|311092747|gb|EFQ51103.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LEAF 3008A-a]
          Length = 647

 Score =  584 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 250/655 (38%), Positives = 356/655 (54%), Gaps = 33/655 (5%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            + ++ YD SSI+IL GLE VR RPGMYIG TD + L+HL  E++DN++DE +AG+   I
Sbjct: 2   TNLNNTYDDSSIQILHGLEAVRKRPGMYIGSTDRQGLNHLVYEILDNSVDEAMAGFGKEI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V++  +  ++V D GRG+P   H       T+E+ILT LHAGGKF    Y+ SGGLHGV
Sbjct: 62  NVTIHPDNSVSVQDFGRGMPTGMH--ASGLPTIEVILTVLHAGGKFTEKNYQTSGGLHGV 119

Query: 158 GISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           G SVVNALS+ L V V R    F ++F   G P+  L+K     +K GT ITF+PD KIF
Sbjct: 120 GSSVVNALSEWLKVRVVRDGQAFEEEFVDGGKPVGTLKKLGATSDKTGTLITFKPDSKIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                +    + +  +  A+L   V+   + +++   K      +EFY+  G+K+++   
Sbjct: 180 STTI-YKYETIQERLREAAFLLKGVRFTLTDERDPQRK------DEFYYDDGIKSFVSYL 232

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335
            E++  I    F  + E        VE++  + +   E   S+ N + T +GG+HE+G R
Sbjct: 233 NEDKDTIGDI-FYFEGEIDNI---KVEFSGQYNDGYSENVVSFVNNVRTIDGGSHEAGAR 288

Query: 336 VALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLD 391
              TR    YA+     +         D       +LSV I E   EF GQTK KL +  
Sbjct: 289 SGFTRAFNDYAKKQGLLKTKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQ 348

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR--L 449
           A+  V+N + +   +YL++N   A KL++      E R   +K R+ +R    RK +  L
Sbjct: 349 ARSVVDNIIYEQLSYYLMENGEFAQKLVQKAQRAREAREAAKKARDESRSGKKRKKKEVL 408

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
            GKL           ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + I  
Sbjct: 409 SGKLTPAQSRNPEKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKARLQDIFK 468

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N++I  ++  +G      +   D  Y K+IIMTDAD DGAHI  LLLTFFY+ M  +IE 
Sbjct: 469 NEEINTMIHTIGAGVGPDFEIADANYNKIIIMTDADTDGAHIQILLLTFFYRYMKPMIEA 528

Query: 570 KHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
             +++  PPL+++ +G        Y+  +E  QK ++EF K       + RFKGLGEM A
Sbjct: 529 GRVYIALPPLYKLEKGQGKNVDIKYSWTDEELQKNVKEFGK----GYSLQRFKGLGEMNA 584

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            QL ET M+ N RTL+RV+I+         +  +  LMG K   R K+I E   F
Sbjct: 585 DQLWETTMNPNTRTLIRVKIDD----AALAERRVTTLMGDKVAARRKWIDENVKF 635


>gi|306827658|ref|ZP_07460937.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           pyogenes ATCC 10782]
 gi|304430139|gb|EFM33169.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           pyogenes ATCC 10782]
          Length = 650

 Score =  584 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 255/652 (39%), Positives = 376/652 (57%), Gaps = 24/652 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +     YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I
Sbjct: 9   EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHI 68

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGV
Sbjct: 69  KVFIEADNSITVVDDGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS +L V V +   I  Q+F RG  ++ LE          T + F PDP+IF 
Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEIIGTTDVTG-TTVHFTPDPEIFT 186

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   FD + L K  Q  A+L+  +K   +  +   E     ++E F++ GG+ +Y++   
Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGME-----QEEHFHYEGGIGSYVEFLN 241

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           + + +I         E +G     VE A+ +       + S+ N I T EGGTHE G R 
Sbjct: 242 DKKDVIFETPIYTDGELEGI---AVEVAVQYTTSYQETVMSFANNIHTHEGGTHEQGFRA 298

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA+  +   +   ++  +D+      ++SV    P+F GQTKTKL + +  +
Sbjct: 299 ALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
                  + F  +L++NP  A K++E  I  S+ R+  ++ RE   +K+ +    LPGKL
Sbjct: 359 ITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS N A+  ELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I
Sbjct: 419 ADCSSNDANQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 478

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             L  A+G    + +     RY+K++IMTDADVDGAHI +LLLT  Y+ M  ++E  +++
Sbjct: 479 RSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVY 538

Query: 574 LISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           +  PP++ +  G++   Y       E+  +  LE++   G+ K  + R+KGLGEM   QL
Sbjct: 539 IAQPPIYGVKVGSEIKEYIQPGIDQEDQLKTALEKYS-IGRSKPTVQRYKGLGEMDDHQL 597

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET MD   R + RV ++       +     + LMG + + R  FI+E A +
Sbjct: 598 WETTMDPENRLMARVTVDD----AAEADKVFDMLMGDRVEPRRDFIEENAVY 645


>gi|313678887|ref|YP_004056627.1| DNA gyrase subunit B [Mycoplasma bovis PG45]
 gi|312950233|gb|ADR24828.1| DNA gyrase, B subunit [Mycoplasma bovis PG45]
          Length = 655

 Score =  584 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 256/665 (38%), Positives = 363/665 (54%), Gaps = 25/665 (3%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
            +     ++ + +Y+ASSIR+LEGLE VR+RPGMYIG   +K LHHL  E++DN++DE +
Sbjct: 5   KNTNQDKKTENSSYNASSIRVLEGLEAVRVRPGMYIGTITDKGLHHLVWEIVDNSVDECM 64

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AGYAN I++++  +G++ + DNGRGIPV  HP+    ST+E +LT LHAGGKFD+  Y++
Sbjct: 65  AGYANYIKITICKDGYIEIEDNGRGIPVAKHPQ-TGLSTVETVLTVLHAGGKFDSDAYKV 123

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV--RNKRGTRIT 208
           SGGLHGVG SVVNALS +LHV V R+   +   F  G               N+ GT+I 
Sbjct: 124 SGGLHGVGASVVNALSSDLHVWVKREGHTYYAHFQNGGQTVQPLTIINDIEPNETGTKIK 183

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F PD  I      F    +    +  AYL+   +     +            EEFY+ GG
Sbjct: 184 FYPDFSILEKHP-FSVEAITDHAKRIAYLTKGTRLVVVDE-------FNNTSEEFYYEGG 235

Query: 269 LKTYLQTKLENRSLISSEIFTGKT---EKKGTHRGTVEWAIAWCEENPEI-TSYCNTILT 324
           L  Y+    E + L+   I   +      K   + TVE A+ +        T+Y N I+T
Sbjct: 236 LIDYVNELNEGQKLVHDSIIYAEGLYDSDKSGSKITVEVAMQYISTFQPRITTYTNNIVT 295

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQ 382
            EGGTHE G   AL+R I  YA      +  S     +D     V I+S+   +P F GQ
Sbjct: 296 IEGGTHEQGFFDALSRLINSYALKNNLIKNDSERLNKEDTSKGLVAIVSIKHPDPIFEGQ 355

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK KL + DA+  V   L    + Y  +NPI+A +++   ++  + RL      +  +  
Sbjct: 356 TKGKLNNKDARTAVREILAPVLERYFDENPIDAREIINKCLQSRKSRLAAEAAAKAVQAN 415

Query: 443 AIRKLRL--PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
                    PGKLA+C+   A   EL+IVEG+SAGGSAK  R+R+ QA+LPLRGK++N  
Sbjct: 416 MGNNSIASLPGKLANCTSKNAEICELYIVEGNSAGGSAKMGRDRNVQAILPLRGKVINAE 475

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
               E++ +N +I+ L+ ALG      +    LRY KVIIMTDADVDGAHI +LLLTFFY
Sbjct: 476 KVSPERVLSNAEIISLITALGTGLNETFDINKLRYHKVIIMTDADVDGAHIRTLLLTFFY 535

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           +    LIE   +++  PPL++I Q     YA+++  K  IL+E   +   KI I R+KGL
Sbjct: 536 RYFRKLIEYGFIYIAQPPLYKIQQNKYIAYAYNDSQKDSILQEL--NQDSKITIQRYKGL 593

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GEM   QL ET M+   R + +V+I+               LMG     R +FI++ A F
Sbjct: 594 GEMDPEQLWETTMNPENRKMYQVQIDD----AAKADWVFTTLMGDDVLPRREFIEKNAKF 649

Query: 681 IDDVG 685
           + ++ 
Sbjct: 650 VQNID 654


>gi|323488988|ref|ZP_08094225.1| DNA topoisomerase IV subunit B [Planococcus donghaensis MPA1U2]
 gi|323397380|gb|EGA90189.1| DNA topoisomerase IV subunit B [Planococcus donghaensis MPA1U2]
          Length = 656

 Score =  584 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 236/650 (36%), Positives = 354/650 (54%), Gaps = 36/650 (5%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y+  +I++LEGL+ VR RPGMYIG TD + LHHL  E++DN++DE +AG+ + I V++  
Sbjct: 9   YNEEAIQVLEGLDAVRKRPGMYIGSTDTRGLHHLVYEIVDNSVDEALAGHGDKISVTIHE 68

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +  ++V D GRG+P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVVN
Sbjct: 69  DNSISVRDYGRGMPTGMH--RSGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVVN 126

Query: 164 ALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           ALS  L VT+ R    + Q+F  G  P++ LE+    +   GT I F PD  IF     +
Sbjct: 127 ALSSFLEVTIYRDGKKYRQRFENGGKPVTTLEEIGSTKE-TGTMIHFLPDESIFSVS-KY 184

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L +  +  A+L   +K      +  A+       + F++  G++ ++    E + +
Sbjct: 185 NYETLSERLRESAFLLKGLKIELFDQRTEAK-------DVFHYETGIEAFVSYLNEEKDV 237

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +       + ++       +E++  + +     I S+ N + T +GGTHE+G + A+TR 
Sbjct: 238 LHPVA-YIEGQQD---EMEIEFSFQFNDGYSETILSFVNNVRTRDGGTHETGAKAAMTRV 293

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397
              YA        +  ++   D+      I+SV I E   +F GQTK+KL + +A+  V+
Sbjct: 294 FNDYARKINLLKDKDKNLEGSDIREGLAAIVSVRIPEALLQFEGQTKSKLGTSEARSIVD 353

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP---GKLA 454
           + +     ++L +N   +  L+   I  ++ RL  RK RE  R    RK       GKL 
Sbjct: 354 SVVSQKLMYFLEENADLSASLVRKAIRAAQARLAARKAREDARNGKKRKKSDALLSGKLT 413

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
                 A   EL++VEGDSAGGSAKQ R+R+ QA+LPLRGK++N   A  E+I  N++I 
Sbjct: 414 PAQSRNAKKNELYLVEGDSAGGSAKQGRDRTFQAILPLRGKVVNTEKAKLEEIMKNEEIS 473

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++ A+G    S +  +D+ Y K+IIMTDAD DGAHI  LLLTFF++ M  LIE   +F+
Sbjct: 474 TIIHAIGGGVSSDFSIDDIAYNKIIIMTDADTDGAHIQVLLLTFFFRYMKPLIEAGKVFI 533

Query: 575 ISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
             PPL+++++G   K V  YA  E      +++  K       + R+KGLGEM A QL E
Sbjct: 534 ALPPLYKVSKGLGKKEVIDYAWTEADLDASIKKVGK----GYTLQRYKGLGEMNADQLWE 589

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           T M+   RTL+RV I          +  I  LMG K + R ++I+    F
Sbjct: 590 TTMNPETRTLIRVTIED----SARAERGITTLMGDKVEPRRRWIESNVDF 635


>gi|309803989|ref|ZP_07698071.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LactinV
           11V1-d]
 gi|309805612|ref|ZP_07699654.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LactinV
           09V1-c]
 gi|325912134|ref|ZP_08174532.1| DNA topoisomerase IV, B subunit [Lactobacillus iners UPII 143-D]
 gi|308163908|gb|EFO66173.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LactinV
           11V1-d]
 gi|308165050|gb|EFO67291.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LactinV
           09V1-c]
 gi|325476084|gb|EGC79252.1| DNA topoisomerase IV, B subunit [Lactobacillus iners UPII 143-D]
          Length = 647

 Score =  584 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 251/655 (38%), Positives = 356/655 (54%), Gaps = 33/655 (5%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            + ++ YD SSI+IL GLE VR RPGMYIG TD + L+HL  E++DN++DE +AGY   I
Sbjct: 2   TNLNNTYDDSSIQILHGLEAVRKRPGMYIGSTDRQGLNHLVYEILDNSVDEAMAGYGKEI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V++  +  ++V D GRG+P   H       T+E+ILT LHAGGKF    Y+ SGGLHGV
Sbjct: 62  NVTIHPDNSVSVQDFGRGMPTGMH--ASGLPTIEVILTVLHAGGKFTEKNYQTSGGLHGV 119

Query: 158 GISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           G SVVNALS+ L V V R    F ++F   G P+  L+K     +K GT ITF+PD KIF
Sbjct: 120 GSSVVNALSEWLKVRVVRDGQAFEEEFVDGGKPVGTLKKLGATSDKTGTLITFKPDSKIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                +    + +  +  A+L   V+   + +++   K      +EFY+  G+K+++   
Sbjct: 180 STTI-YKYETIQERLREAAFLLKGVRFTLTDERDPQRK------DEFYYDDGIKSFVSYL 232

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335
            E++  I    F  + E        VE++  + +   E   S+ N + T +GG+HE+G R
Sbjct: 233 NEDKDTIGDI-FYFEGEIDNI---KVEFSGQYNDGYSENVVSFVNNVRTIDGGSHEAGAR 288

Query: 336 VALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLD 391
              TR    YA+     +         D       +LSV I E   EF GQTK KL +  
Sbjct: 289 SGFTRAFNDYAKKQGLLKTKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQ 348

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR--L 449
           A+  V+N + +   +YL++N   A KL++      E R   +K R+ +R    RK +  L
Sbjct: 349 ARSVVDNIIYEQLSYYLMENGEFAQKLVQKAQRAREAREAAKKARDESRSGKKRKKKEVL 408

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
            GKL           ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + I  
Sbjct: 409 SGKLTPAQSRNPEKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKARLQDIFK 468

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N++I  ++  +G      +   D  Y K+IIMTDAD DGAHI  LLLTFFY+ M  +IE 
Sbjct: 469 NEEINTMIHTIGAGVGPDFEIADANYNKIIIMTDADTDGAHIQILLLTFFYRYMKPMIEA 528

Query: 570 KHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
             +++  PPL+++ +G        Y+  +E  QK ++EF K       + RFKGLGEM A
Sbjct: 529 GRVYIALPPLYKLEKGQGKNVDIKYSWTDEELQKNVKEFGK----GYSLQRFKGLGEMNA 584

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            QL ET M+ N RTL+RV+I+         +  +  LMG K   R K+I E   F
Sbjct: 585 DQLWETTMNPNTRTLIRVKIDD----AALAERRVTTLMGDKVAARRKWIDENVKF 635


>gi|259046724|ref|ZP_05737125.1| DNA topoisomerase IV, B subunit [Granulicatella adiacens ATCC
           49175]
 gi|259036620|gb|EEW37875.1| DNA topoisomerase IV, B subunit [Granulicatella adiacens ATCC
           49175]
          Length = 686

 Score =  584 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 241/656 (36%), Positives = 358/656 (54%), Gaps = 35/656 (5%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
              ++ Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DE ++GYA  I
Sbjct: 2   SKVTNQYNDDAIQVLEGLEAVRKRPGMYIGSTDHRGLHHLAYEIVDNAVDEALSGYATKI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           EV++  +  L+V DNGRG+P   H       T+++I T LHAGGKF    Y+ SGGLHGV
Sbjct: 62  EVTIHKDQSLSVKDNGRGMPTGKH--ASGIPTIQVIFTVLHAGGKFGQGGYKTSGGLHGV 119

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           G SVVNALSD L V V R  T++ Q F  G  P+  ++K++  R   GT +TF P  K F
Sbjct: 120 GASVVNALSDWLTVEVLRDGTLYKQSFKNGGEPVGTVKKEKTSRRGSGTTVTFLPSDKTF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                +    L +  +  A+L   +    + ++         E E F++  G++ ++Q  
Sbjct: 180 STTN-WSYETLAERLRESAFLLKGLTIVLTDER-------TGESETFHYEEGIRDFIQYL 231

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            E +  +S  +    T          E+A  + +     I S+ N + T +GGTHE G++
Sbjct: 232 NEEKDTLSPVVDFDST----VDGVETEFAFQYNDGYSETILSFVNNVRTKDGGTHEVGMK 287

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLD 391
            ALT+   +YA       ++  ++   D+      I+S+ I E   +F GQTK KL +  
Sbjct: 288 SALTKAFNEYARKVGLLKEKDKNLEGSDVREGLTAIISLRIPEEILQFEGQTKDKLGTPA 347

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LR 448
           A+  V+N + +    +L +N   A +L+   I+  E R   RK RE +R     K     
Sbjct: 348 ARGIVDNTISEQLGFFLTENGEIAQELIRKAIKAREAREASRKAREESRNGKKGKKKETL 407

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           L GKL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A    I 
Sbjct: 408 LSGKLTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKASISDIL 467

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            N++I  ++  +G    S ++ ED  Y+K++IMTDAD DGAHI  LLLTFFY+ M  LIE
Sbjct: 468 KNEEINTIIYTIGAGVGSDFKIEDCNYDKIVIMTDADTDGAHIQVLLLTFFYRYMKPLIE 527

Query: 569 QKHLFLISPPLFRITQG---TKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
              ++L  PPL++I++G    + + YA  E+  ++  +   K       + R+KGLGEM 
Sbjct: 528 AGKVYLALPPLYKISKGTGKKQVIEYAWTEKELEEKTKLVGK----GYLLQRYKGLGEMN 583

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           A QL +T M+ + RTL+RV I+         +  ++ LMG K + R K+I+    F
Sbjct: 584 ADQLWDTTMNPDTRTLIRVVIDD----KAQAERRVSTLMGNKVEPRRKWIERHVEF 635


>gi|317498962|ref|ZP_07957245.1| hypothetical protein HMPREF0996_02229 [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893795|gb|EFV15994.1| hypothetical protein HMPREF0996_02229 [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 637

 Score =  584 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 251/651 (38%), Positives = 357/651 (54%), Gaps = 28/651 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A+  YDA+SI +LEGLE VR RPGMYIG    K L+HL  E++DN++DE +AGY + I V
Sbjct: 2   ANKTYDANSISVLEGLEAVRKRPGMYIGSVSTKGLNHLIYEIVDNSVDEFLAGYCDEITV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           SL+ +G  T+ DNGRGIPV  + +   K+ +E++ T LHAGGKF +  Y+ISGGLHGVG 
Sbjct: 62  SLNKDGTATITDNGRGIPVGIN-ERTGKTAVEMVFTMLHAGGKFGDGGYKISGGLHGVGA 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGD 218
           SVVNALS  L VTV +   ++ Q++ RG  ++PLE     R    GT + F PDP+IF  
Sbjct: 121 SVVNALSTWLTVTVKQGGKVYQQRYERGKIITPLEVIGTCRKSDTGTNVQFLPDPEIFDK 180

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F AA +       AYL+ ++   +  ++E  E        +++ P G+  Y++   E
Sbjct: 181 TY-FKAAMVRNRLHETAYLNPKLTIHYVNEREGEETT-----VDYHEPEGICAYVKKLNE 234

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVA 337
            + ++   ++     K+       E A  +  +    I  +CN I T EGGTH +G +  
Sbjct: 235 GKQMLHEPVYF----KRMIDGIEAEVAFQYTEDFGENILGFCNNIYTIEGGTHITGFKTK 290

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            T  + +YA       ++  +    D+      I+SV   EP F GQTKTKL + DA + 
Sbjct: 291 FTTIMNQYAREIGVLKEKDSNFTGTDVRNGMTAIVSVKHPEPRFEGQTKTKLDNPDAAKA 350

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           V     +    Y  +N     K+L    + ++ R    K +          +   GKLA+
Sbjct: 351 VGEIAGEELVLYFDKNLDTLKKVLACAEKSAKIRKAEEKAKTNMLVKQKLSIDSNGKLAN 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C    A   E+FIVEGDSAGGSAK ARNR  QA+LP+RGKILNV  A  +K+  N +I  
Sbjct: 411 CESRKAQDCEIFIVEGDSAGGSAKTARNRKTQAILPIRGKILNVEKATMDKVLANAEIKT 470

Query: 516 LVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++ A GC       + +    LRY K+IIMTDADVDGAHIA+LLLTFFY+ M +LI   H
Sbjct: 471 MINAFGCGFSEGYGNDFDISKLRYHKIIIMTDADVDGAHIATLLLTFFYRFMPELITHGH 530

Query: 572 LFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           +FL +PPL++   +  +  Y  D+      L  ++   KG   + R+KGLGEM A QL E
Sbjct: 531 VFLATPPLYKAMPKKGEETYLFDDA----ALTRYRAEHKGNFTLQRYKGLGEMDAQQLWE 586

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           T ++   RTL ++EI     +   T    + LMG+    R +FI E A+  
Sbjct: 587 TTLNPESRTLKQIEIEDARMASDVT----SMLMGSNVPPRRQFIYENANEA 633


>gi|56551307|ref|YP_162146.1| DNA topoisomerase IV subunit B [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|56542881|gb|AAV89035.1| DNA topoisomerase IV, B subunit [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 660

 Score =  584 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 339/653 (51%), Positives = 451/653 (69%), Gaps = 7/653 (1%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
                 ++DNY+A SI +LEGLEP+R RPGMYIGGTDE+A HHL +EV+DNAMDE +AG+
Sbjct: 7   KSTVTPSADNYNADSIEVLEGLEPIRRRPGMYIGGTDERAFHHLAAEVLDNAMDEAVAGH 66

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A  IEV+LD    LT+ DNGRGIP++ HPKFP+KS LE+ILTTLH+GGKF N  Y  SGG
Sbjct: 67  ATRIEVTLDTGDRLTITDNGRGIPIDPHPKFPDKSALEVILTTLHSGGKFSNKAYATSGG 126

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVGISVVNALS E  V VAR   ++ Q FSRG+PL  LE+     N+RGT ++F PD 
Sbjct: 127 LHGVGISVVNALSSETTVEVARNRLLYRQSFSRGVPLGALEQVGNAPNRRGTSVSFIPDT 186

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IFG    F  A+L +M +SKAYL   V+  W C  E+A +  +PEK   +FPGGL  YL
Sbjct: 187 EIFGKTLHFKPAKLYRMVRSKAYLFAGVEIIWRCAPELASED-VPEKAVIHFPGGLADYL 245

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHES 332
           + ++  R   + E FTG+        G+VEWA+AW          YCNTILT  GGTHE 
Sbjct: 246 KEEVGKRDCATKEFFTGRQSFSDE-EGSVEWAVAWPLWSEGSSLYYCNTILTPAGGTHEQ 304

Query: 333 GLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           GLR+AL RG++ + EL   K+A  I  +D+++ A  +LS+FIREP+F  QTK +L +   
Sbjct: 305 GLRLALVRGLRAFGELVGLKKAKDIAPEDVIVGADMVLSLFIREPQFQSQTKDRLTNPQV 364

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLP 450
              VE A+RD FDH+L  +      LL +++ER +ERLRRR +R++ RKT    RKLRLP
Sbjct: 365 AGLVEKAIRDHFDHFLTDDMDRGRALLGFIMERMDERLRRRAERDIKRKTVTAARKLRLP 424

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL DCSQ+ A  +ELFIVEGDSAGGSAKQAR+R  QA+LP+RGKILNVA+A + KI  N
Sbjct: 425 GKLTDCSQDAADNSELFIVEGDSAGGSAKQARDRKTQAILPIRGKILNVAAATNAKILAN 484

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           Q+I D+ QALGC  R +   + LRY+++IIM+DADVDGAHIA+LL+TFF++EM +++   
Sbjct: 485 QEISDITQALGCGVRDRCDPQALRYDRIIIMSDADVDGAHIATLLMTFFFREMTEIVRNG 544

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           H++L  PPL+R+  G K++YA D+ H+ ++ +   K    K+E++RFKGLGEM   QL+E
Sbjct: 545 HIYLAQPPLYRLKAGAKTLYARDDNHRVELEKTVFK--GRKVEVARFKGLGEMNPQQLRE 602

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
           T MD   R+LLRV + KD    ++  D +++LMG + + RF FIQ  A+  D+
Sbjct: 603 TTMDPKTRSLLRVTLPKDYQDRQEISDLVDRLMGRQPEHRFAFIQANAAQFDE 655


>gi|156888559|gb|ABU96684.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 641

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 243/652 (37%), Positives = 370/652 (56%), Gaps = 34/652 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I V +
Sbjct: 10  NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIRVVI 69

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G ++V D+GRG+P   H       T+++I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 70  NKDGSVSVADSGRGMPTGQH--VMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 127

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F   G P++ L+K     ++K GT +TF PD KIF   
Sbjct: 128 VNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFST- 186

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   VK   +  +        P  EEF++  G++ +++   E+
Sbjct: 187 IDFKFNTISERLKESAFLLKNVKMSLTDLRGDD-----PIIEEFHYENGVQDFVEYLNED 241

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++  I+    ++       VE A+ + +   +   S+ N + T +GG+HE+GL+ A+
Sbjct: 242 KETLTPVIYMEGQDQD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       ILS+ + E   +F GQTK KL S  A+ 
Sbjct: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAILSILVPEQHLQFEGQTKDKLGSPLARP 357

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            VE+ + +    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 358 IVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 417

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL       A   EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N+
Sbjct: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  +V  +G    + +  ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 478 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 537

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     K  YA  +   + +  EF K       + R+KGLGEM A+Q
Sbjct: 538 VYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI----LQRYKGLGEMNANQ 593

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679
           L ET MD   RTL+RV I+     L   +  ++ LMG KA  R ++I++   
Sbjct: 594 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVK 641


>gi|15674782|ref|NP_268956.1| DNA gyrase subunit B [Streptococcus pyogenes M1 GAS]
 gi|71910366|ref|YP_281916.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS5005]
 gi|73919732|sp|Q9A0L0|GYRB_STRP1 RecName: Full=DNA gyrase subunit B
 gi|13621909|gb|AAK33677.1| putative DNA gyrase, subunit B [Streptococcus pyogenes M1 GAS]
 gi|71853148|gb|AAZ51171.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS5005]
          Length = 650

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 255/652 (39%), Positives = 375/652 (57%), Gaps = 24/652 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +     YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I
Sbjct: 9   EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHI 68

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGV
Sbjct: 69  KVFIEADNSITVVDDGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS +L V V +   I  Q+F RG  ++ LE          T + F PDP+IF 
Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVIGTTDVTG-TTVHFTPDPEIFT 186

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   FD + L K  Q  A+L+  +K   +  +   E     ++E F + GG+ +Y++   
Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGME-----QEEHFLYEGGIGSYVEFLN 241

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           + + +I         E +G     VE A+ +       + S+ N I T EGGTHE G R 
Sbjct: 242 DKKDVIFETPIYTDGELEGI---AVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRA 298

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA+  +   +   ++  +D+      ++SV    P+F GQTKTKL + +  +
Sbjct: 299 ALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
                  + F  +L++NP  A K++E  I  S+ R+  ++ RE   +K+ +    LPGKL
Sbjct: 359 ITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS N A+  ELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I
Sbjct: 419 ADCSSNDANQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 478

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             L  A+G    + +     RY+K++IMTDADVDGAHI +LLLT  Y+ M  ++E  +++
Sbjct: 479 RSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVY 538

Query: 574 LISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           +  PP++ +  G++   Y       E+  +  LE++   G+ K  + R+KGLGEM   QL
Sbjct: 539 IAQPPIYGVKVGSEIKEYIQPGIDQEDQLKTALEKYS-IGRSKPTVQRYKGLGEMDDHQL 597

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET MD   R + RV ++       +     + LMG + + R  FI+E A +
Sbjct: 598 WETTMDPENRLMARVTVDD----AAEADKVFDMLMGDRVEPRRDFIEENAVY 645


>gi|224139720|ref|XP_002323244.1| predicted protein [Populus trichocarpa]
 gi|222867874|gb|EEF05005.1| predicted protein [Populus trichocarpa]
          Length = 700

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 247/676 (36%), Positives = 374/676 (55%), Gaps = 31/676 (4%)

Query: 21  EKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSE 80
                      + +    + S  Y +  I++L+GLEPVR RPGMYIG T  + LHHL  E
Sbjct: 44  SPRAFMSTSVATESQQESAGSKAYGSDQIQVLKGLEPVRKRPGMYIGSTGPRGLHHLVYE 103

Query: 81  VIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140
           ++DNA+DE  AGYA+ I V L  +  +++ DNGRGIP + HP+   KS LE +LT LHAG
Sbjct: 104 ILDNAVDEAQAGYASTINVVLHSDNSVSITDNGRGIPTDLHPE-TKKSALETVLTVLHAG 162

Query: 141 GKF--DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE- 197
           GKF   NS Y +SGGLHGVG+SVVNALS+EL VTV R    + QK+SRG P++ L   E 
Sbjct: 163 GKFGGSNSGYRVSGGLHGVGLSVVNALSEELEVTVWRDGKQYQQKYSRGNPVTTLTCHEL 222

Query: 198 --KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
             + + +RGT I F PD ++F  +  FD   +    +  A+L+ +               
Sbjct: 223 PVESKERRGTHIKFWPDKEVFTTEIQFDYHTIAGRVRELAFLNPK-----------DNDP 271

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI 315
              + +E ++ GGL  Y+     ++  +   +   K E  G     +         +  I
Sbjct: 272 EKNQFDEHFYAGGLVEYVNWLNTDKKPLHDVLGFRK-EVDGIA-IDMALQWCSDAYSDTI 329

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             Y N+I T +GGTH  G + +LTR +    + ++    + +S+  + +      I+SV 
Sbjct: 330 LGYANSIRTVDGGTHIDGAKASLTRTLNNLGKKSKVIKDKDMSLSGEHVREGLTCIISVK 389

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRR 432
           +  PEF GQTKT+L + + ++ VE ++++    YL  +P     +L   +         +
Sbjct: 390 VPSPEFEGQTKTRLGNPEVRKVVEQSIQEYLTEYLELHPDALDSILSKSLNALKAALAAK 449

Query: 433 RKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           R +  V +K+ ++   LPGKLADCS      +E+FIVEGDSAGGSAKQ R+R  QA+LPL
Sbjct: 450 RARELVRQKSVLKSSSLPGKLADCSSTDPEESEIFIVEGDSAGGSAKQGRDRRFQAILPL 509

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHI 551
           RGKILN+       +  N++I +L+  LG   + +  ++D LRY K+II+TDADVDGAHI
Sbjct: 510 RGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRYHKIIILTDADVDGAHI 569

Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK 611
            +LLLTFF++    L ++  +++  PPL+++ +G ++ Y  D+   +KI   F ++    
Sbjct: 570 RTLLLTFFFRYQRALFDEGCIYVGVPPLYKVERGKQAYYCFDDAELKKIQRSFPQN--AS 627

Query: 612 IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERF 671
             I RFKGLGEM+ +QL ET MD  +R L ++ +        +     + LMGT+ D R 
Sbjct: 628 YNIQRFKGLGEMMPAQLWETTMDPERRVLKQLVVED----AAEANIVFSSLMGTRVDFRK 683

Query: 672 KFIQERAS--FIDDVG 685
           + IQ  AS   +D + 
Sbjct: 684 ELIQNAASMINVDHLD 699


>gi|94988237|ref|YP_596338.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS9429]
 gi|94541745|gb|ABF31794.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS9429]
          Length = 650

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 255/652 (39%), Positives = 376/652 (57%), Gaps = 24/652 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +     YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I
Sbjct: 9   EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHI 68

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGV
Sbjct: 69  KVFIEADNSITVVDDGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS +L V V +   I  Q+F RG  ++ LE          T + F PDP+IF 
Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVIGTTDVTG-TTVHFTPDPEIFT 186

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   FD + L K  Q  A+L+  +K   +  +   E     ++E F++ GG+ +Y++   
Sbjct: 187 ETTQFDYSVLAKRIQELAFLNHGLKISITDKRSGME-----QEEHFHYEGGIGSYVEFLN 241

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           + + +I         E +G     VE A+ +       + S+ N I T EGGTHE G R 
Sbjct: 242 DKKDVIFETPIYTDGELEGI---AVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRA 298

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA+  +   +   ++  +D+      ++SV    P+F GQTKTKL + +  +
Sbjct: 299 ALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
                  + F  +L++NP  A K++E  I  S+ R+  ++ RE   +K+ +    LPGKL
Sbjct: 359 ITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS N A+  ELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I
Sbjct: 419 ADCSSNDANQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 478

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             L  A+G    + +     RY+K++IMTDADVDGAHI +LLLT  Y+ M  ++E  +++
Sbjct: 479 RSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVY 538

Query: 574 LISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           +  PP++ +  G++   Y       E+  +  LE++   G+ K  + R+KGLGEM   QL
Sbjct: 539 IAQPPIYGVKVGSEIKEYIQPGIDQEDQLKTALEKYS-IGRSKPTVQRYKGLGEMDDHQL 597

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET MD   R + RV ++       +     + LMG + + R  FI+E A +
Sbjct: 598 WETTMDPENRLMARVTVDD----AAEADKVFDMLMGDRVEPRRDFIEENAVY 645


>gi|315653530|ref|ZP_07906450.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus iners ATCC
           55195]
 gi|315488892|gb|EFU78534.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus iners ATCC
           55195]
          Length = 647

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 251/655 (38%), Positives = 355/655 (54%), Gaps = 33/655 (5%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            + ++ YD SSI+IL GLE VR RPGMYIG TD + L+HL  E++DN++DE +AGY   I
Sbjct: 2   TNLNNTYDDSSIQILHGLEAVRKRPGMYIGSTDRQGLNHLVYEILDNSVDEAMAGYGKEI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V++  +  ++V D GRG+P   H       T+E+ILT LHAGGKF    Y+ SGGLHGV
Sbjct: 62  NVTIHPDNSVSVQDFGRGMPTGMH--ASGLPTIEVILTVLHAGGKFTEKNYQTSGGLHGV 119

Query: 158 GISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           G SVVNALS+ L V V R    F ++F   G P+  L+K     +K GT ITF+PD KIF
Sbjct: 120 GSSVVNALSEWLKVRVVRDGQAFEEEFVDGGKPVGTLKKLGATSDKTGTLITFKPDSKIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                +    + +  +  A+L   V+   + ++    K      +EFY+  G+K+++   
Sbjct: 180 STTI-YKYETIQERLREAAFLLKGVRFTLTDERGPQRK------DEFYYDDGIKSFVSYL 232

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335
            E++  I    F  + E        VE++  + +   E   S+ N + T +GG+HE+G R
Sbjct: 233 NEDKDTIGDI-FYFEGEIDNI---KVEFSGQYNDGYSENVVSFVNNVRTIDGGSHEAGAR 288

Query: 336 VALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLD 391
              TR    YA+     +         D       +LSV I E   EF GQTK KL +  
Sbjct: 289 SGFTRAFNDYAKKQGLLKTKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQ 348

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR--L 449
           A+  V+N + +   +YL++N   A KL++      E R   +K R+ +R    RK +  L
Sbjct: 349 ARSVVDNIIYEQLSYYLMENGEFAQKLVQKAQRAREAREAAKKARDESRSGKKRKKKEVL 408

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
            GKL           ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + I  
Sbjct: 409 SGKLTPAQSRNPEKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKARLQDIFK 468

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N++I  ++  +G      +   D  Y K+IIMTDAD DGAHI  LLLTFFY+ M  +IE 
Sbjct: 469 NEEINTMIHTIGAGVGPDFEIADANYNKIIIMTDADTDGAHIQILLLTFFYRYMKPMIEA 528

Query: 570 KHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
             +++  PPL+++ +G        Y+  +E  QK ++EF K       + RFKGLGEM A
Sbjct: 529 GRVYIALPPLYKLEKGQGKNVDIKYSWTDEELQKNVKEFGK----GYSLQRFKGLGEMNA 584

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            QL ET M+ N RTL+RV+I+         +  +  LMG K   R K+I E   F
Sbjct: 585 DQLWETTMNPNTRTLIRVKIDD----AALAERRVTTLMGDKVAARRKWIDENVKF 635


>gi|224543251|ref|ZP_03683790.1| hypothetical protein CATMIT_02451 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523784|gb|EEF92889.1| hypothetical protein CATMIT_02451 [Catenibacterium mitsuokai DSM
           15897]
          Length = 645

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 243/649 (37%), Positives = 352/649 (54%), Gaps = 33/649 (5%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YD S I+IL+GLE VR RPGMYIG TD + LHHL  E++DN++DE IAGY   I V+L  
Sbjct: 8   YDESDIQILKGLEAVRKRPGMYIGSTDSRGLHHLVWEIVDNSIDEAIAGYGKKITVTLHK 67

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGVGISVV 162
           +  +TV D GRG+P   + K   K T E+ILT LHAGGKF ++  Y+ SGGLHGVG SVV
Sbjct: 68  DNSVTVEDEGRGMPTGIN-KETGKPTTEVILTVLHAGGKFSEDGGYKTSGGLHGVGSSVV 126

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+ L VTV R   I +Q+F +G       KK    NK GT I F+PD  IF     F
Sbjct: 127 NALSEFLEVTVHRDGVIHTQRFEKGATKIGKLKKVGKTNKTGTIIHFKPDASIFST-TTF 185

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               + +  +  A+L   +      ++         + E + +  GL+ ++     ++  
Sbjct: 186 SFQTISERLREDAFLLKGMTIELIDER-------TDKDETYQYEKGLEEFIDWINNDKEA 238

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +S  I          +   VE A+ + +     I S+ N + T +GGTHE G R  LT+ 
Sbjct: 239 VSPIISF----DDTNNEIEVEIAMQFTQSYQENIISFVNLVRTGDGGTHEVGFRSGLTKV 294

Query: 342 IKKYAELT--QNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397
             +YA        +  ++   D+      I+SV I E   +F GQTK+KL S  A+  +E
Sbjct: 295 FNEYARKYALLKAKDKNLEGSDVREGLNAIISVKIPEKYLQFEGQTKSKLGSPIARNILE 354

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV--NRKTAIRKLRLPGKLAD 455
           N   +   ++L +N   A KL+E +I+ +  R   RK +E     K       L GKLA 
Sbjct: 355 NVTFERITYFLEENKDIAEKLIEKMIKAANARQAARKAKEQARKGKNNREAKFLSGKLAP 414

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
                    EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A    I  N++I  
Sbjct: 415 AQSKNKRKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKATQADILKNEEIST 474

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++  +     + +  +D  Y+K+IIMTDAD DGAHI  LLLTFFY+ M DLI+   +++ 
Sbjct: 475 MINTINAGVGADFNADDSAYDKIIIMTDADTDGAHIQILLLTFFYRYMRDLIKAGKVYIA 534

Query: 576 SPPLFRITQ--GTK--SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
            PPL+++++  G K   +Y  DE+  +   ++  +      ++ R+KGLGEM A QL ET
Sbjct: 535 MPPLYKVSKKSGKKDNVIYCWDEKDLEAARKKMGR----GYDVQRYKGLGEMNAEQLWET 590

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            M+   RTL++V I+         + S++ LMG K   R ++I+    F
Sbjct: 591 TMNPETRTLIQVTIDD----AAIVERSVSVLMGDKVQPRREWIENNVQF 635


>gi|229586475|ref|YP_002844976.1| DNA topoisomerase IV subunit B [Rickettsia africae ESF-5]
 gi|228021525|gb|ACP53233.1| DNA topoisomerase IV, B subunit [Rickettsia africae ESF-5]
          Length = 662

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 336/661 (50%), Positives = 454/661 (68%), Gaps = 14/661 (2%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +    N+   +NY A  I +LEGLEPVR RPGMYIGGTD  A+HHL SEV+DNAMDE +A
Sbjct: 8   NKEKKNKLVDNNYSAKDIEVLEGLEPVRKRPGMYIGGTDLNAMHHLVSEVLDNAMDEAVA 67

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+A++I +++  +  +T+ DNGRGIP++NHPKFP+KS LE+ILTTLH+GGKF N+ Y  +
Sbjct: 68  GFASIITITMHHDHSITIFDNGRGIPIDNHPKFPDKSALEVILTTLHSGGKFSNNVYHTA 127

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVGISVVNALS  L + V +Q  ++SQ +S+G  L+ L  +E  +  RGT I F P
Sbjct: 128 GGLHGVGISVVNALSKHLEIKVYKQGKLYSQSYSKGEKLTDLICEEASKRLRGTSINFTP 187

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           DP+IF +K  F+  ++ ++ +SKAYL   V   W+C+ E+  +  IP+K    FP GLK 
Sbjct: 188 DPEIFSEKLHFNPKKIYELARSKAYLYRGVTIEWACEVEV--QSDIPKKALISFPNGLKD 245

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT--SYCNTILTDEGGT 329
           YL +K+   +L+   IF G  E   + +  +EWAI W   +      SYCNT+ T +GGT
Sbjct: 246 YLSSKITLDNLVIPGIFAGNIES-TSDKIKLEWAICWQNNDSSAFVQSYCNTVPTPQGGT 304

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           HE GL+ A+ RG+K Y E+  NK+A ++  +D++ +A  +LS+FI EP F GQTK KLVS
Sbjct: 305 HEQGLKSAILRGLKAYGEMIGNKKAANLTIEDILETASVVLSIFITEPSFQGQTKEKLVS 364

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
               + VEN ++D FDH+L  +   AT LLE VI  +E R+ ++ ++ ++RK A +KLRL
Sbjct: 365 NGVSKPVENIIKDHFDHFLSSDKALATNLLEHVISIAEFRISKKNEKNISRKNATQKLRL 424

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC++    GTELFIVEGDSAGGSAKQARNR  QAVLPL GK+LNVAS+  EKI N
Sbjct: 425 PGKLADCTRTSPEGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSTLEKIVN 484

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           NQ I DL  AL C +   Y++E+LRYEK+IIMTDADVDGAHIASLL+TFF+  M  L+E+
Sbjct: 485 NQAIQDLEIALACGSLKNYKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEE 544

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
            HL+L  PPL+R+TQ  K+ YA DEE K K+ ++  K  K KIE+ RFKGLGEM+ +QLK
Sbjct: 545 GHLYLAKPPLYRLTQSNKTYYAGDEEEKAKLTDKLLKASKAKIEVGRFKGLGEMMPAQLK 604

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA-----SFIDDV 684
           ET M   KR+LL+V +       ++    ++ LMG K ++RF+FI E+A       I ++
Sbjct: 605 ETTMHPEKRSLLKVTL----ADFQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIISEL 660

Query: 685 G 685
            
Sbjct: 661 D 661


>gi|255012609|ref|ZP_05284735.1| DNA gyrase, B subunit [Bacteroides sp. 2_1_7]
          Length = 620

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 250/632 (39%), Positives = 370/632 (58%), Gaps = 21/632 (3%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIG T EK LHHL  EV+DN++DE +AGY   I+V ++ +  +TV D+GRGIPV+ H K
Sbjct: 1   MYIGDTSEKGLHHLVYEVVDNSIDEALAGYCTYIDVVINEDNSITVTDDGRGIPVDIHEK 60

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
              KS LE++LT LHAGGKFD  TY++SGGLHGVG+S VNALS  L   V R   +  Q+
Sbjct: 61  -EGKSALEVVLTVLHAGGKFDKGTYKVSGGLHGVGVSCVNALSTYLKAEVRRNGKVHMQE 119

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           FS G PL  ++  +   +K GT I+F+PD  IF     +    L    +  A+L+  +  
Sbjct: 120 FSCGKPLHDVQVIDNT-DKTGTTISFKPDGSIFTVT-EYKYDILATRLRELAFLNAGITL 177

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
             +  + + E     + E F+   GLK +++    ++  +  ++    TEK+G     VE
Sbjct: 178 RLTDKRVLKEDG-SFKSEVFHSDEGLKEFVRYIDRSKEKLIPDVIHIVTEKQGIP---VE 233

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISD 360
            A+ +       + SY N I T EGGTH +G R  LTR +KKYAE ++   K  + I  D
Sbjct: 234 VALTYNTSYNESVFSYVNDINTIEGGTHLAGFRRGLTRTLKKYAEDSKLLEKAKVEIQGD 293

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D       ++S+ + EP+F GQTKTKL + +    V+ A+ +   +YL ++P EA  +++
Sbjct: 294 DFREGLTAVISIKVAEPQFEGQTKTKLGNSEVTGAVDMAIGEALGYYLEEHPKEAKIIVD 353

Query: 421 WVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
            VI  ++ R   RK RE+ ++ + +    LPGKLADCS   A   ELF+VEGDSAGG+AK
Sbjct: 354 KVILAAQARHAARKARELVQRKSPLTGGGLPGKLADCSSKDAAICELFLVEGDSAGGTAK 413

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY-----REEDLR 534
           Q R+R+ QA+LPLRGKILNV  A   KI  +++I ++ +A+G    ++        E LR
Sbjct: 414 QGRDRNFQAILPLRGKILNVEKAMDHKIFESEEIQNIYRAMGVTVGTEDDPKALNMEKLR 473

Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDE 594
           Y KVIIMTDADVDG+HIA+L+LTFF++ M  LIE  +++L +PPL+   +G    Y   E
Sbjct: 474 YHKVIIMTDADVDGSHIATLILTFFFRRMRSLIENGYVYLATPPLYLCKKGKVEEYCWTE 533

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
           + +Q+ + ++    +  I   R+KGLGEM   QL +T M+   RTL ++ I+    +  +
Sbjct: 534 QQRQQFILKYGGGNENSIHTQRYKGLGEMNDHQLWDTTMNPENRTLKQITID----NAAE 589

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVGT 686
                  LMG     R +FI+E A++  ++  
Sbjct: 590 ADQIFAMLMGEDVGPRREFIEENATYA-NIDA 620


>gi|168490903|ref|ZP_02715046.1| DNA gyrase, B subunit [Streptococcus pneumoniae CDC0288-04]
 gi|169833521|ref|YP_001694269.1| DNA gyrase subunit B [Streptococcus pneumoniae Hungary19A-6]
 gi|182683725|ref|YP_001835472.1| DNA gyrase subunit B [Streptococcus pneumoniae CGSP14]
 gi|221231606|ref|YP_002510758.1| DNA gyrase subunit B [Streptococcus pneumoniae ATCC 700669]
 gi|225854322|ref|YP_002735834.1| DNA gyrase subunit B [Streptococcus pneumoniae JJA]
 gi|225858616|ref|YP_002740126.1| DNA gyrase subunit B [Streptococcus pneumoniae 70585]
 gi|303255780|ref|ZP_07341821.1| DNA gyrase subunit B [Streptococcus pneumoniae BS455]
 gi|303260274|ref|ZP_07346245.1| DNA gyrase subunit B [Streptococcus pneumoniae SP-BS293]
 gi|303261480|ref|ZP_07347428.1| DNA gyrase subunit B [Streptococcus pneumoniae SP14-BS292]
 gi|303264148|ref|ZP_07350069.1| DNA gyrase subunit B [Streptococcus pneumoniae BS397]
 gi|303266242|ref|ZP_07352133.1| DNA gyrase subunit B [Streptococcus pneumoniae BS457]
 gi|303268680|ref|ZP_07354470.1| DNA gyrase subunit B [Streptococcus pneumoniae BS458]
 gi|1490397|emb|CAA91553.1| DNA gyrase [Streptococcus pneumoniae]
 gi|73916244|gb|AAZ92990.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916262|gb|AAZ92999.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916276|gb|AAZ93006.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916288|gb|AAZ93012.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916298|gb|AAZ93017.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916300|gb|AAZ93018.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916302|gb|AAZ93019.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916304|gb|AAZ93020.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916306|gb|AAZ93021.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916308|gb|AAZ93022.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916310|gb|AAZ93023.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916312|gb|AAZ93024.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916314|gb|AAZ93025.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916316|gb|AAZ93026.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916320|gb|AAZ93028.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916326|gb|AAZ93031.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916330|gb|AAZ93033.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916332|gb|AAZ93034.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916334|gb|AAZ93035.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916338|gb|AAZ93037.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916340|gb|AAZ93038.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916342|gb|AAZ93039.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916350|gb|AAZ93043.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|168996023|gb|ACA36635.1| DNA gyrase, B subunit [Streptococcus pneumoniae Hungary19A-6]
 gi|182629059|gb|ACB90007.1| DNA gyrase subunit B [Streptococcus pneumoniae CGSP14]
 gi|183574700|gb|EDT95228.1| DNA gyrase, B subunit [Streptococcus pneumoniae CDC0288-04]
 gi|220674066|emb|CAR68579.1| DNA gyrase subunit B [Streptococcus pneumoniae ATCC 700669]
 gi|225721919|gb|ACO17773.1| DNA gyrase, B subunit [Streptococcus pneumoniae 70585]
 gi|225722735|gb|ACO18588.1| DNA gyrase, B subunit [Streptococcus pneumoniae JJA]
 gi|301801650|emb|CBW34348.1| DNA gyrase subunit B [Streptococcus pneumoniae INV200]
 gi|302597164|gb|EFL64269.1| DNA gyrase subunit B [Streptococcus pneumoniae BS455]
 gi|302637614|gb|EFL68101.1| DNA gyrase subunit B [Streptococcus pneumoniae SP14-BS292]
 gi|302638598|gb|EFL69062.1| DNA gyrase subunit B [Streptococcus pneumoniae SP-BS293]
 gi|302641740|gb|EFL72097.1| DNA gyrase subunit B [Streptococcus pneumoniae BS458]
 gi|302644172|gb|EFL74428.1| DNA gyrase subunit B [Streptococcus pneumoniae BS457]
 gi|302646553|gb|EFL76779.1| DNA gyrase subunit B [Streptococcus pneumoniae BS397]
 gi|327390163|gb|EGE88506.1| DNA gyrase, B subunit [Streptococcus pneumoniae GA04375]
 gi|332076087|gb|EGI86553.1| DNA gyrase, B subunit [Streptococcus pneumoniae GA41301]
          Length = 648

 Score =  583 bits (1502), Expect = e-164,   Method: Composition-based stats.
 Identities = 249/648 (38%), Positives = 374/648 (57%), Gaps = 22/648 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I+V 
Sbjct: 10  AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVF 69

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGVG S
Sbjct: 70  IEPDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 128

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L V V +   I  Q++ RG  ++ LE      ++ GT + F PDP+IF +  
Sbjct: 129 VVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFTPDPEIFTETT 187

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD  +L K  Q  A+L+  ++   +  ++  E     + + +++ GG+ +Y++   EN+
Sbjct: 188 IFDFDKLNKRIQELAFLNRGLQISITDKRQGLE-----QTKHYHYEGGIASYVEYINENK 242

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
            +I         E       TVE A+ +     E   S+ N I T EGGTHE G R ALT
Sbjct: 243 DVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALT 299

Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA   +  +    ++  +D+      ++SV    P+F GQTKTKL + +  +   
Sbjct: 300 RVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 359

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
               + F  +L++NP  A +++E  ++        +R +    +K+ +    LPGKLADC
Sbjct: 360 RLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADC 419

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I  L
Sbjct: 420 SSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 479

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    +++     RY+K+++MTDADVDGAHI +LLLT  Y+ M  ++E  ++++  
Sbjct: 480 FTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQ 539

Query: 577 PPLFRITQGTKSV-YAHDEEHKQKILEEFKK---HGKGKIEISRFKGLGEMLASQLKETA 632
           PP++ +  G++   Y      ++  L+E       G+ K  I R+KGLGEM   QL ET 
Sbjct: 540 PPIYGVKVGSEIKEYIQPGADQEIKLQEALARYSEGRTKPTIQRYKGLGEMDDHQLWETT 599

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           MD   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 600 MDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643


>gi|289642470|ref|ZP_06474615.1| DNA gyrase, B subunit [Frankia symbiont of Datisca glomerata]
 gi|289507729|gb|EFD28683.1| DNA gyrase, B subunit [Frankia symbiont of Datisca glomerata]
          Length = 644

 Score =  583 bits (1502), Expect = e-164,   Method: Composition-based stats.
 Identities = 249/656 (37%), Positives = 360/656 (54%), Gaps = 29/656 (4%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YDASSI++LEGL+ VR RPGMYIG T E+ LHHL  EV+DNA+DE +AGY + I V+L  
Sbjct: 3   YDASSIKVLEGLDAVRKRPGMYIGSTGERGLHHLVYEVVDNAVDEALAGYCDTIGVTLLA 62

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G + V DNGRGIPV  HP    +  +E++LTTLHAGGKFD  +Y +SGGLHGVG+SVVN
Sbjct: 63  DGGVRVSDNGRGIPVGEHP-TEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHGVGVSVVN 121

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS  L V + R+   + Q +    P +PL K      K GT +TF  D  IF     + 
Sbjct: 122 ALSTRLEVEIRREGFTWFQPYENTRPAAPLAK-GAPTRKTGTTVTFWADDTIFET-TDYK 179

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L +  Q  A+L+  +      ++        P +  + + GGL  +++    ++  I
Sbjct: 180 YETLSRRLQEMAFLNKGLTISLRDER-----PEEPLEVTYRYAGGLVDFVEHLNASKDPI 234

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
              + +  ++  G      E A+ W       + ++ NTI T EGGTHE G R ALT  +
Sbjct: 235 HKTVISLDSKGTGI---EAELAMQWNSGYNESVYTFANTINTHEGGTHEEGFRAALTSAV 291

Query: 343 KKYAELTQNKRAISIISDD---------LMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
             YA+     +       +         +      I+SV + +P+F GQTKTKL + +A+
Sbjct: 292 NAYAKDQNLLKPPKSNGKNADERLAGDDIREGLTAIISVKLAQPQFEGQTKTKLGNSEAK 351

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
           R ++         +L  N +EA  ++   ++    R+  R  R+   RK  +    LPGK
Sbjct: 352 RFIQEMCYSALKDWLEANRVEARAIVSKALDAQRARIAARAARDLTRRKGLLGGTGLPGK 411

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC        EL+IVEGDSAGGSAK  R+   QA+LPLRGKILNV  A  +++  N +
Sbjct: 412 LADCQYTDPERCELYIVEGDSAGGSAKGGRDSKFQAILPLRGKILNVEKARIDRVLKNTE 471

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           +  L+QALGC     +    LRY K+++M DADVDG HI +LLLT  ++ M  L+E  ++
Sbjct: 472 VQALIQALGCGIHDDFDASKLRYHKIVLMADADVDGQHIRTLLLTLLFRFMRPLVEAGYV 531

Query: 573 FLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKG--KIEISRFKGLGEMLASQLK 629
           FL  PPL++I  G +   YA+ +  +  ++E   + G+   K  I RFKGLGEM A++L 
Sbjct: 532 FLAQPPLYKIKWGREDWQYAYSDRERDGLIEHGIEAGRKLPKDAIQRFKGLGEMNATELW 591

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +T MD ++R LL+V ++          +  + LMG   D R  FIQ  A  +  + 
Sbjct: 592 DTTMDPDRRILLQVTLDD----AAVADELFSVLMGEDVDARRSFIQRNAKDVRFLD 643


>gi|168484465|ref|ZP_02709417.1| DNA gyrase, B subunit [Streptococcus pneumoniae CDC1873-00]
 gi|73916352|gb|AAZ93044.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|172042299|gb|EDT50345.1| DNA gyrase, B subunit [Streptococcus pneumoniae CDC1873-00]
          Length = 648

 Score =  583 bits (1502), Expect = e-164,   Method: Composition-based stats.
 Identities = 249/648 (38%), Positives = 374/648 (57%), Gaps = 22/648 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I+V 
Sbjct: 10  AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVF 69

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGVG S
Sbjct: 70  IEPDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 128

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L V V +   I  Q++ RG  ++ LE      ++ GT + F PDP+IF +  
Sbjct: 129 VVNALSTQLDVYVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFTPDPEIFTETT 187

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD  +L K  Q  A+L+  ++   +  ++  E     + + +++ GG+ +Y++   EN+
Sbjct: 188 IFDFDKLNKRIQELAFLNRGLQISITDKRQGLE-----QTKHYHYEGGIASYVEYINENK 242

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
            +I         E       TVE A+ +     E   S+ N I T EGGTHE G R ALT
Sbjct: 243 DVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALT 299

Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA   +  +    ++  +D+      ++SV    P+F GQTKTKL + +  +   
Sbjct: 300 RVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 359

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
               + F  +L++NP  A +++E  ++        +R +    +K+ +    LPGKLADC
Sbjct: 360 RLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADC 419

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I  L
Sbjct: 420 SSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 479

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    +++     RY+K+++MTDADVDGAHI +LLLT  Y+ M  ++E  ++++  
Sbjct: 480 FTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQ 539

Query: 577 PPLFRITQGTKSV-YAHDEEHKQKILEEFKK---HGKGKIEISRFKGLGEMLASQLKETA 632
           PP++ +  G++   Y      ++  L+E       G+ K  I R+KGLGEM   QL ET 
Sbjct: 540 PPIYGVKVGSEIKEYIQPGADQEIKLQEALARYSEGRTKPTIQRYKGLGEMDDHQLWETT 599

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           MD   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 600 MDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643


>gi|156888561|gb|ABU96685.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|156889070|gb|ABU96686.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 641

 Score =  583 bits (1502), Expect = e-164,   Method: Composition-based stats.
 Identities = 244/652 (37%), Positives = 370/652 (56%), Gaps = 34/652 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I V +
Sbjct: 10  NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIRVVI 69

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G ++V D+GRG+P   H       T+++I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 70  NKDGSVSVADSGRGMPTGQH--VMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 127

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F   G P++ L+K     ++K GT +TF PD KIF   
Sbjct: 128 VNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFST- 186

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L   VK   +  +        P  EEF++  G++ +++   E+
Sbjct: 187 IDFKFNTISERLKESAFLLKNVKMSLTDLRGDD-----PIIEEFHYENGVQDFVEYLNED 241

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  ++  I+    ++       VE A+ + +   +   S+ N + T +GG+HE+GL+ A+
Sbjct: 242 KETLTPVIYMEGQDQD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       ILS+ + E   +F GQTK KL S  A+ 
Sbjct: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAILSILVPEQHLQFEGQTKDKLGSPLARP 357

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            VE+ + +    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 358 IVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 417

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL       A   EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N+
Sbjct: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  +V  +G    + +  ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 478 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 537

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     K  YA  +   + +  EF K       + R+KGLGEM A+Q
Sbjct: 538 VYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI----LQRYKGLGEMNANQ 593

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679
           L ET MD   RTL+RV I+     L   +  ++ LMG KA  R K+I++   
Sbjct: 594 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRKWIEDNVK 641


>gi|307706371|ref|ZP_07643183.1| DNA gyrase, B subunit [Streptococcus mitis SK321]
 gi|307618289|gb|EFN97444.1| DNA gyrase, B subunit [Streptococcus mitis SK321]
          Length = 648

 Score =  583 bits (1502), Expect = e-164,   Method: Composition-based stats.
 Identities = 251/648 (38%), Positives = 374/648 (57%), Gaps = 22/648 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I+V 
Sbjct: 10  AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVF 69

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGVG S
Sbjct: 70  IEPDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 128

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L V V +   I  Q++ RG  ++ LE       + GT + F PDP+IF +  
Sbjct: 129 VVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-ERTGTTVHFTPDPEIFTETT 187

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD  +L K  Q  A+L+  ++   +  +E  E     + + +++ GG+ +Y++   EN+
Sbjct: 188 TFDFDKLNKRIQELAFLNRGLQISITDKREGLE-----QTKHYHYEGGIASYVEYINENK 242

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
            +I         E       TVE A+ +     E   S+ N I T EGGTHE G R ALT
Sbjct: 243 DVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALT 299

Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA   +  +    ++  +D+      ++SV    P+F GQTKTKL + +  +   
Sbjct: 300 RVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 359

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
               D F  +L++NP  A +++E  ++        +R +    +K+ +    LPGKLADC
Sbjct: 360 RLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADC 419

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I  L
Sbjct: 420 SSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 479

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    +++     RY+K+++MTDADVDGAHI +LLLT  Y+ M  ++E  ++++  
Sbjct: 480 FTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQ 539

Query: 577 PPLFRITQGTKSV-YAHDEEHKQKILEEFKK---HGKGKIEISRFKGLGEMLASQLKETA 632
           PP++ +  G++   Y      ++  L+E       G+ K  I R+KGLGEM   QL ET 
Sbjct: 540 PPIYGVKVGSEIKEYIQPGADQEIKLQEALARYSEGRTKPTIQRYKGLGEMDDHQLWETT 599

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           MD + R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 600 MDPDHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643


>gi|73916260|gb|AAZ92998.1| DNA gyrase subunit B [Streptococcus pneumoniae]
          Length = 648

 Score =  583 bits (1502), Expect = e-164,   Method: Composition-based stats.
 Identities = 249/648 (38%), Positives = 374/648 (57%), Gaps = 22/648 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I+V 
Sbjct: 10  AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVF 69

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGVG S
Sbjct: 70  IEPDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 128

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L V V +   I  Q++ RG  ++ LE      ++ GT + F PDP+IF +  
Sbjct: 129 VVNALSTQLDVYVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFTPDPEIFTETT 187

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD  +L K  Q  A+L+  ++   +  ++  E     + + +++ GG+ +Y++   EN+
Sbjct: 188 IFDFDKLNKRIQELAFLNRGLQISITDKRQGLE-----QTKHYHYEGGIASYVEYINENK 242

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
            +I         E       TVE A+ +     E   S+ N I T EGGTHE G R ALT
Sbjct: 243 DVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALT 299

Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA   +  +    ++  +D+      ++SV    P+F GQTKTKL + +  +   
Sbjct: 300 RVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 359

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
               + F  +L++NP  A +++E  ++        +R +    +K+ +    LPGKLADC
Sbjct: 360 RLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADC 419

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I  L
Sbjct: 420 SSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRXL 479

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    +++     RY+K+++MTDADVDGAHI +LLLT  Y+ M  ++E  ++++  
Sbjct: 480 FTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQ 539

Query: 577 PPLFRITQGTKSV-YAHDEEHKQKILEEFKK---HGKGKIEISRFKGLGEMLASQLKETA 632
           PP++ +  G++   Y      ++  L+E       G+ K  I R+KGLGEM   QL ET 
Sbjct: 540 PPIYGVKVGSEIKEYIQPGADQEIKLQEALARYSEGRTKPTIQRYKGLGEMDDHQLWETT 599

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           MD   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 600 MDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643


>gi|315654385|ref|ZP_07907293.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii
           ATCC 51333]
 gi|315491420|gb|EFU81037.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii
           ATCC 51333]
          Length = 686

 Score =  583 bits (1502), Expect = e-164,   Method: Composition-based stats.
 Identities = 249/689 (36%), Positives = 363/689 (52%), Gaps = 33/689 (4%)

Query: 24  KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVID 83
            K  +  D+     +   ++YDAS IR+LEGLE VR+RPGMYIG T E+ LHHL  EV+D
Sbjct: 3   AKKPKKGDTNVSDFEKPEEHYDASDIRVLEGLEAVRVRPGMYIGSTGERGLHHLVYEVVD 62

Query: 84  NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143
           N++DE +AGY + IEV+L  +G + V DNGRGIPV  HP   ++ T+E+++T LHAGGKF
Sbjct: 63  NSVDESLAGYCDHIEVTLQADGGVRVADNGRGIPVAEHP-SEHRPTVEVVMTILHAGGKF 121

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
             S+Y +SGGLHGVGISVVNALS ++  TV R    +  +F  G  +    ++ +   + 
Sbjct: 122 GGSSYAVSGGLHGVGISVVNALSTKILTTVKRDGYEWHIEFGNGGKVIQPLRRGEPTEET 181

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK------------EI 251
           GT   F PDP+IF     FD   L    Q  A+L+  ++   + ++            + 
Sbjct: 182 GTVQVFYPDPEIFET-VEFDYETLRTRFQQMAFLNKGLRITITDERPNVTAEGDFVTGDQ 240

Query: 252 AEKYGIPEK----EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE---KKGTHRGTVEW 304
                 P+       + +  GL  Y+    + +            E   +   +   +E 
Sbjct: 241 DGDADSPKVGRRSVSYCYENGLHDYVHFINDTKKSEVVHEEIIDFEASLEDVENAMALEI 300

Query: 305 AIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDD 361
           A+ W       I +Y NTI T EGGTHE G R ALT  + K          +  ++  DD
Sbjct: 301 ALQWTSAYSESIYTYANTINTTEGGTHEEGFRAALTSLMNKVGREKGFIKDKDENLSGDD 360

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
                  ++SV IR P+F GQTKTKL + +A+  V+  +      +   +P E   ++  
Sbjct: 361 CREGLTAVISVKIRNPQFEGQTKTKLGNTEARTFVQQTVYSQLGDWFDAHPAECKAIIAK 420

Query: 422 VIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
                + R   RK R+   RKTA+    +PGKL DCS   A   E+F+VEGDSAGGSA  
Sbjct: 421 AQSAQQARNAARKARDATRRKTALDSFSMPGKLRDCSSRDASDCEIFLVEGDSAGGSAVA 480

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            R+ ++QA+LPLRGKILNV  A  ++  +N++I  L+ A G      +    LRY K+++
Sbjct: 481 GRDPAHQAILPLRGKILNVEKARLDRALDNKEIQSLITAFGTGIGEDFDLSKLRYYKIVL 540

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQK 599
           M DADVDG HI +LLLT  ++ M  LIE  H+FL +PPL+R+    K   + + ++ K K
Sbjct: 541 MADADVDGQHITTLLLTLLFRYMRPLIENGHVFLATPPLYRLKWSNKPHQFVYSDKEKDK 600

Query: 600 ILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
           ++      G    +   I R+KGLGEM A +L ET MD + R L +V +++         
Sbjct: 601 MVSLGLDSGARMPKEGGIQRYKGLGEMSAQELWETTMDPSARLLKQVTMDE----AASAD 656

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           +  + LMG     R  FIQ  A  +  + 
Sbjct: 657 EVFSLLMGEDVSSRRAFIQRNAQDVRFLD 685


>gi|73916266|gb|AAZ93001.1| DNA gyrase subunit B [Streptococcus pneumoniae]
          Length = 648

 Score =  583 bits (1502), Expect = e-164,   Method: Composition-based stats.
 Identities = 249/648 (38%), Positives = 373/648 (57%), Gaps = 22/648 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I+V 
Sbjct: 10  AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVF 69

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGVG S
Sbjct: 70  IEPDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 128

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L V V +   I  Q++ RG  ++ LE      ++ GT + F PDP+IF +  
Sbjct: 129 VVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFTPDPEIFTETT 187

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD  +L K  Q  A+L+  ++   +  ++  E     + + +++ GG+ +Y++   EN+
Sbjct: 188 IFDFDKLNKRIQELAFLNRGLQISITDKRQGLE-----QTKHYHYEGGIASYVEYINENK 242

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
            +I         E       TVE A+ +     E   S+ N I T EGGTHE G R ALT
Sbjct: 243 DVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALT 299

Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA   +  +    ++  +D+      ++SV    P+F GQTKTKL + +  +   
Sbjct: 300 RVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 359

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
               + F  +L++NP  A  ++E  ++        +R +    +K+ +    LPGKLADC
Sbjct: 360 RLFSEAFSDFLMENPQIAKLIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADC 419

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I  L
Sbjct: 420 SSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 479

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    +++     RY+K+++MTDADVDGAHI +LLLT  Y+ M  ++E  ++++  
Sbjct: 480 FTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQ 539

Query: 577 PPLFRITQGTKSV-YAHDEEHKQKILEEFKK---HGKGKIEISRFKGLGEMLASQLKETA 632
           PP++ +  G++   Y      ++  L+E       G+ K  I R+KGLGEM   QL ET 
Sbjct: 540 PPIYGVKVGSEIKEYIQPGADQEIKLQEALARYSEGRTKPTIQRYKGLGEMDDHQLWETT 599

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           MD   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 600 MDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643


>gi|157803444|ref|YP_001491993.1| DNA topoisomerase IV subunit B [Rickettsia canadensis str. McKiel]
 gi|157784707|gb|ABV73208.1| DNA topoisomerase IV subunit B [Rickettsia canadensis str. McKiel]
          Length = 662

 Score =  583 bits (1502), Expect = e-164,   Method: Composition-based stats.
 Identities = 336/660 (50%), Positives = 450/660 (68%), Gaps = 12/660 (1%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +     +  +++Y A  I +LEGLEPVR RPGMYIGG D  A+HHL SEV+DNAMDE +A
Sbjct: 8   NKEKKIKLVNNSYSAKDIEVLEGLEPVRKRPGMYIGGIDSSAMHHLVSEVLDNAMDEAVA 67

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           GYA++I + +  +  +T+ DNGRGIP++NHPKFP+KS LE+ILTTLH+GGKF N+ Y  +
Sbjct: 68  GYASIITIKMHQDHSITIFDNGRGIPIDNHPKFPDKSALEVILTTLHSGGKFSNNVYHTA 127

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVGISVVNALS  L V V +Q  ++SQ +S+G  L+ L  +E  +  RGT I F P
Sbjct: 128 GGLHGVGISVVNALSKHLDVKVYKQGKLYSQSYSKGEKLTGLICEEAPKRLRGTSINFTP 187

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           DP+IFG+K  F+  ++ ++ +SKAYL   V   W C+ E++    IP+K    FP GLK 
Sbjct: 188 DPEIFGEKLHFNPKKIYELARSKAYLYRGVTIEWECEVEVS--SDIPKKALINFPNGLKD 245

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRG-TVEWAIAWCEENPEITSYCNTILTDEGGTH 330
           YL +K+   +LI+ EIF+G  E K               + +  I SYCNT+ T +GGTH
Sbjct: 246 YLSSKITLDNLITQEIFSGNIESKPDGVILEWAICWQNNDNSAFIQSYCNTVPTPQGGTH 305

Query: 331 ESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           E GL+ A+ RG+K Y E+  NK+A ++  +D++ +A  +LS+FI EP F GQTK KLVS 
Sbjct: 306 EQGLKSAILRGLKTYGEMIGNKKAANLTIEDILETASVVLSIFISEPSFQGQTKEKLVSQ 365

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
              + VEN ++D FDH+L  N   AT LLE VI  +E R+ ++  + ++RK A +KLRLP
Sbjct: 366 GVSKPVENIIKDHFDHFLSSNKALATNLLEHVIAIAEFRISKKNTKNISRKNATQKLRLP 425

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC++    GTELFIVEGDSAGGSAKQARNR  QAVLPL GK+LNVAS+  EKI NN
Sbjct: 426 GKLADCTRTSPEGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSRLEKIVNN 485

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           Q I DL  AL C +   Y+EE+LRYEK+IIMTDADVDGAHIASLL+TFF+  M  L+E+ 
Sbjct: 486 QAIQDLEIALACGSLKNYKEENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEKG 545

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           HL+L  PPL+R+TQ  K+ YA DEE K ++ ++  K  K +IE+ RFKGLGEM+ +QLKE
Sbjct: 546 HLYLAKPPLYRLTQSNKTYYAADEEEKARLTDKLSKTSKAQIEVGRFKGLGEMMPAQLKE 605

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA-----SFIDDVG 685
           T M   KR+LL+V +       ++    ++ LMG K ++RF+FI E+A       I+D+ 
Sbjct: 606 TTMHPEKRSLLKVTLED----FQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIINDLD 661


>gi|167766557|ref|ZP_02438610.1| hypothetical protein CLOSS21_01063 [Clostridium sp. SS2/1]
 gi|167711680|gb|EDS22259.1| hypothetical protein CLOSS21_01063 [Clostridium sp. SS2/1]
 gi|291558595|emb|CBL37395.1| DNA topoisomerase IV subunit B [butyrate-producing bacterium SSC/2]
          Length = 637

 Score =  583 bits (1502), Expect = e-164,   Method: Composition-based stats.
 Identities = 252/651 (38%), Positives = 357/651 (54%), Gaps = 28/651 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A+  YDA+SI +LEGLE VR RPGMYIG    K L+HL  E++DN++DE +AGY + I V
Sbjct: 2   ANKTYDANSISVLEGLEAVRKRPGMYIGSVSTKGLNHLIYEIVDNSVDEFLAGYCDEITV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           SL+ +G  T+ DNGRGIPV  + +   K+ +E++ T LHAGGKF +  Y+ISGGLHGVG 
Sbjct: 62  SLNKDGTATITDNGRGIPVGIN-ERTGKTAVEMVFTMLHAGGKFGDGGYKISGGLHGVGA 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGD 218
           SVVNALS  L VTV +   ++ Q++ RG  ++PLE     R    GT + F PDP+IF  
Sbjct: 121 SVVNALSTWLTVTVKQGGKVYQQRYERGKIITPLEVIGTCRKSDTGTNVQFLPDPEIFDK 180

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F AA +       AYL+ ++   +  ++E  E        +++ P G+  Y++   E
Sbjct: 181 TY-FKAAMVRNRLHETAYLNPKLTIHYVNEREGEETT-----VDYHEPEGICAYVKKLNE 234

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVA 337
            + ++   ++     K+       E A  +  +    I  +CN I T EGGTH +G +  
Sbjct: 235 GKQMLHEPVYF----KRMIDGIEAEVAFQYTEDFGENILGFCNNIYTIEGGTHITGFKTK 290

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            T  + +YA       ++  +    D+      I+SV   EP F GQTKTKL + DA + 
Sbjct: 291 FTTIMNQYAREIGVLKEKDSNFTGTDVRNGMTAIVSVKHPEPRFEGQTKTKLDNPDAAKA 350

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           V     +    Y  +N     K+L    + ++ R    K +          +   GKLA+
Sbjct: 351 VGEIAGEELVLYFDKNLDTLKKVLACAEKSAKIRKAEEKAKTNMLVKQKLSIDSNGKLAN 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C    A   E+FIVEGDSAGGSAK ARNR  QA+LP+RGKILNV  A  +K+  N +I  
Sbjct: 411 CESRKAQDCEIFIVEGDSAGGSAKTARNRKTQAILPIRGKILNVEKATMDKVLANAEIKT 470

Query: 516 LVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++ A GC       + +    LRY K+IIMTDADVDGAHIA+LLLTFFY+ M +LI   H
Sbjct: 471 MINAFGCGFSEGYGNDFDISKLRYHKIIIMTDADVDGAHIATLLLTFFYRFMPELITHGH 530

Query: 572 LFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           +FL +PPL++   Q  +  Y  D+      L  ++   KG   + R+KGLGEM A QL E
Sbjct: 531 VFLATPPLYKAMPQKGEETYLFDDA----ALTRYRAEHKGNFTLQRYKGLGEMDAQQLWE 586

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           T ++   RTL ++EI       +   D  + LMG+    R +FI E A+  
Sbjct: 587 TTLNPESRTLKQIEIED----ARMASDITSMLMGSDVPPRRQFIYENANEA 633


>gi|227487658|ref|ZP_03917974.1| DNA gyrase subunit B [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227092352|gb|EEI27664.1| DNA gyrase subunit B [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 691

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 252/689 (36%), Positives = 366/689 (53%), Gaps = 58/689 (8%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +YDA+SI +LEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AG+A+ ++V L 
Sbjct: 14  DYDATSITVLEGLEAVRKRPGMYIGSTGRRGLHHLVWEVVDNSIDEALAGFADKVDVVLH 73

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G + V DNGRGIPVE H     + T+E+++T LHAGGKF+N +Y++SGGLHGVGISVV
Sbjct: 74  EDGSVEVTDNGRGIPVEMH--QTGRPTVEVVMTQLHAGGKFNNDSYKVSGGLHGVGISVV 131

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  +   + R    + Q+F+  +P    +         GTRI F PD +IF     F
Sbjct: 132 NALSTRVEADIKRDGYHWYQRFNNQVPDDLEK--GGKARGTGTRIRFWPDAEIFETV-EF 188

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIA------------------------------ 252
           +   +    Q  A+L+  V    +  ++                                
Sbjct: 189 NYKTISDRLQQMAFLNKGVYIKLTDKRKHIIAEEEKPSLEADESLLEADSLSLDEVDEKL 248

Query: 253 -EKYGIPEKEE-------FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
            EK    E E        F++P GL  Y++   + ++ +     T    +       +E 
Sbjct: 249 AEKPQAEEPETPSERSVVFHYPDGLIDYVKFLNKKKTALHP---TIVGFQDSEDDLALEV 305

Query: 305 AIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDD 361
           A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +    +   +  DD
Sbjct: 306 ALQWNTSYKENVFTFANTIATVEGGTHEEGFRAALTTIMNKYARDHKLLKDKDPKLTGDD 365

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
                  ++SV + +P+F GQTKTKL + + +  V+  +     H+   NP EA  +++ 
Sbjct: 366 CREGLSAVVSVKVGDPQFEGQTKTKLGNTNVKSFVQRVVNTHLTHWFEANPAEAKIIVQK 425

Query: 422 VIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
               ++ RL  RK RE V RK+      LPGKLADC       +EL+IVEGDSAGGSAK 
Sbjct: 426 ASSSAQARLAARKARELVRRKSPTDMGGLPGKLADCRSKDPEKSELYIVEGDSAGGSAKA 485

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            R+   QA+LPLRGKILNV  A  ++   N +I  ++ ALG     ++    LRY K+++
Sbjct: 486 GRDSMFQAILPLRGKILNVEKARLDRAFKNAEIQAIITALGTGVHDEFDISKLRYHKIVL 545

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQK 599
           M DADVDG HIA+LLLT  ++ M  LIE+ H++L +PPL+++        +A+ ++ +  
Sbjct: 546 MADADVDGQHIATLLLTLLFRFMPALIEEGHVYLANPPLYKLKWQKGDPGFAYSDQERDD 605

Query: 600 ILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
           +L E  + G+       I R+KGLGEM AS+L ET +D + RTL RV    DL   +   
Sbjct: 606 LLAEGLEAGRKINTDDGIQRYKGLGEMNASELWETTLDPDFRTLRRV----DLEDAERAD 661

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           +  + LMG     R  FI   A  +  + 
Sbjct: 662 ELFSILMGDDVVARRTFITRNAKDVRFLD 690


>gi|312193902|ref|YP_004013963.1| DNA gyrase, B subunit [Frankia sp. EuI1c]
 gi|311225238|gb|ADP78093.1| DNA gyrase, B subunit [Frankia sp. EuI1c]
          Length = 646

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 249/657 (37%), Positives = 362/657 (55%), Gaps = 29/657 (4%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YDASSI++LEGL+ VR RPGMYIG T E+ LHHL SEV+DN++DE +AG+ + I V+L  
Sbjct: 3   YDASSIKVLEGLDAVRKRPGMYIGSTGERGLHHLVSEVVDNSVDEALAGFCDTITVTLLA 62

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G + VVDNGRGIPV  HP    + T+E++LT LHAGGKFD+ +Y +SGGLHGVGISVVN
Sbjct: 63  DGGVRVVDNGRGIPVGMHP-TEKRPTVEVVLTILHAGGKFDSDSYAVSGGLHGVGISVVN 121

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE-KVRNKRGTRITFRPDPKIFGDKAGF 222
           ALS ++ V +      + Q+++   P    ++   K   + GT +TF  D +IF     +
Sbjct: 122 ALSTKVEVEIKVDGFHWFQRYTAQRPGPLEKRAPLKRGERTGTTVTFWADAEIFET-TEY 180

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L +  Q  A+L+  +      ++        P +  F +  GL  ++      +  
Sbjct: 181 KYETLYRRLQEMAFLNKGISISLRDER-----AEEPVEVTFKYENGLADFVAHLNATKEP 235

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           I   I   + + KG      E A+ W       + ++ NTI T EGGTHE G R ALT  
Sbjct: 236 IHKTIVALEAKGKGI---EAEVAMQWNAGYNESVYTFANTINTHEGGTHEEGFRAALTSA 292

Query: 342 IKKYAELTQNKRAISI---------ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           +  YA+     + +             DD+      I+SV + EP+F GQTKTKL + +A
Sbjct: 293 VNVYAKEQNLLKPVKAGAKSPDERLSGDDIREGLTAIISVKLSEPQFEGQTKTKLGNTEA 352

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
           ++ V+         +   N +EA  ++   ++    R+  R  R+   RK  +    LPG
Sbjct: 353 KKFVQEMCYSALRDWFDANRVEARSIVGKALDAQRARIAARAARDLTRRKGLLGGTGLPG 412

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL+DC        EL+IVEGDSAGGSAK  R+   QA+LPLRGKILNV  A  +++  N 
Sbjct: 413 KLSDCQYTDPERCELYIVEGDSAGGSAKGGRDSKFQAILPLRGKILNVEKARIDRVLKNT 472

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++  L+QALG     ++    LRY K+++M DADVDG HI +LLLT  ++ M  L+E  H
Sbjct: 473 EVQALIQALGTGIHDEFDIAKLRYHKIVLMADADVDGQHIRTLLLTLLFRFMRPLVEAGH 532

Query: 572 LFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKG--KIEISRFKGLGEMLASQL 628
           +FL  PPL++I  G +   YA+ +  +  +LE   + G+   K  I RFKGLGEM A++L
Sbjct: 533 VFLAQPPLYKIKWGREDWEYAYSDRERDGLLERGVEAGRKLPKDAIQRFKGLGEMNATEL 592

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +T MD ++R LL+V ++          +  + LMG   D R  FIQ  A  +  + 
Sbjct: 593 WDTTMDPDRRILLQVTLDD----AAVADELFSVLMGEDVDARRSFIQRNAKDVRFLD 645


>gi|297162918|gb|ADI12630.1| DNA gyrase subunit B [Streptomyces bingchenggensis BCW-1]
          Length = 677

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 243/679 (35%), Positives = 368/679 (54%), Gaps = 23/679 (3%)

Query: 23  LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82
             ++            + + +YDA++I +L+GL+ VR RPGMYIG T E+ LHHL  E++
Sbjct: 5   DTRTATDTPGSQQPGHAGAASYDANAITVLDGLDAVRKRPGMYIGSTGERGLHHLVQELV 64

Query: 83  DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142
           DN++DE +AG A+ I+V++  +G + VVDNGRGIPV  HP    +  +E++LT LHAGGK
Sbjct: 65  DNSVDEALAGVADRIDVTVLADGGVRVVDNGRGIPVGMHP-VEKRPAVEVVLTVLHAGGK 123

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           F    Y +SGGLHGVG+SVVNALS  L   +      ++Q +  G P +PL + E     
Sbjct: 124 FGGGGYAVSGGLHGVGLSVVNALSTRLSAEIWTDGYRWTQDYRDGAPTAPLARHEATPR- 182

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------EIAE 253
            GT +TF  D  IF     +    L +  Q  A+L+  +    + ++         + A+
Sbjct: 183 TGTSLTFWADGDIFET-TEYSFETLARRFQEMAFLNRGLTLTLTDERPSAHATAAADEAD 241

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP 313
                +   + + GG+  ++      +             +      +VE A+ W  +  
Sbjct: 242 SDPAAKTVSYRYDGGITDFVAYLNARKGEPVHPSVITIAAEDTERLLSVEVALQWNGQYT 301

Query: 314 E-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGIL 370
           + + SY N I T EGGTHE G R ALT  + +YA   +   ++  ++  +D+      I+
Sbjct: 302 DSVYSYANAIHTHEGGTHEEGFRTALTTVVNRYAREKKLLREKDANLSGEDIREGLTAII 361

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV + EP+F GQTKTKL + +A+  V+  + +    +  +NP EA  ++   I+ +  R+
Sbjct: 362 SVKLGEPQFEGQTKTKLGNTEARTFVQKVVHEHLTGWFDRNPNEAADVVRKAIQAATARV 421

Query: 431 RRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK R++ R+   +    LPGKL+DC  N    +E+FIVEGDSAGGSAK  RN   QA+
Sbjct: 422 AARKARDLTRRKGLLETAALPGKLSDCQSNDPAMSEIFIVEGDSAGGSAKSGRNPQYQAI 481

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549
           LP+RGKILNV  A  +KI +NQ+I  ++ A G      +    LRY K+I+M DADVDG 
Sbjct: 482 LPIRGKILNVEKARIDKILHNQEIQAIISAFGTGVHEDFDIARLRYHKIILMADADVDGQ 541

Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTK-SVYAHDEEHKQKILEEFKKHG 608
           HI +LLLTF ++ M  LIE+ H++L  PPL++I        YA+ +  +  +LE  ++ G
Sbjct: 542 HINTLLLTFLFRFMRPLIEEGHVYLSRPPLYKIKWSRDHVEYAYSDRERNMLLERGRQDG 601

Query: 609 KGK--IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK 666
           +      I RFKGLGEM A +L+ T MD + R L +V ++          D  + LMG  
Sbjct: 602 RRSKDDSIQRFKGLGEMNAEELRVTTMDPDHRVLGQVTLDD----AAVADDLFSVLMGED 657

Query: 667 ADERFKFIQERASFIDDVG 685
            + R  FIQ  A  +  + 
Sbjct: 658 VEARRHFIQRNAKDVRFLD 676


>gi|73916248|gb|AAZ92992.1| DNA gyrase subunit B [Streptococcus pneumoniae]
          Length = 648

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 249/648 (38%), Positives = 374/648 (57%), Gaps = 22/648 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I+V 
Sbjct: 10  AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVF 69

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGVG S
Sbjct: 70  IEPDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 128

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L V V +   I  Q++ RG  ++ LE      ++ GT + F PDP+IF +  
Sbjct: 129 VVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFTPDPEIFTETT 187

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD  +L K  Q  A+L+  ++   +  ++  E     + + +++ GG+ +Y++   EN+
Sbjct: 188 IFDFDKLNKRIQELAFLNRGLQISITDKRQGLE-----QTKHYHYEGGIASYVEYINENK 242

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
            +I         E       TVE A+ +     E   S+ N I T EGGTHE G R ALT
Sbjct: 243 DVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALT 299

Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA   +  +    ++  +D+      ++SV    P+F GQTKTKL + +  +   
Sbjct: 300 RVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVIKITN 359

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
               + F  +L++NP  A +++E  ++        +R +    +K+ +    LPGKLADC
Sbjct: 360 RLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADC 419

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I  L
Sbjct: 420 SSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 479

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    +++     RY+K+++MTDADVDGAHI +LLLT  Y+ M  ++E  ++++  
Sbjct: 480 FTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQ 539

Query: 577 PPLFRITQGTKSV-YAHDEEHKQKILEEFKK---HGKGKIEISRFKGLGEMLASQLKETA 632
           PP++ +  G++   Y      ++  L+E       G+ K  I R+KGLGEM   QL ET 
Sbjct: 540 PPIYGVKVGSEIKEYIQPGADQEIKLQEALARYSEGRTKPTIQRYKGLGEMDDHQLWETT 599

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           MD   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 600 MDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643


>gi|315657693|ref|ZP_07910575.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|315492165|gb|EFU81774.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 686

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 249/689 (36%), Positives = 363/689 (52%), Gaps = 33/689 (4%)

Query: 24  KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVID 83
            K  +  D+     +   ++YDAS IR+LEGLE VR+RPGMYIG T E+ LHHL  EV+D
Sbjct: 3   AKKPKKGDTNVSDFEKPEEHYDASDIRVLEGLEAVRVRPGMYIGSTGERGLHHLVYEVVD 62

Query: 84  NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143
           N++DE +AGY + IEV+L  +G + V DNGRGIPV  HP   ++ T+E+++T LHAGGKF
Sbjct: 63  NSVDESLAGYCDHIEVTLQADGGVRVADNGRGIPVAEHP-SEHRPTVEVVMTILHAGGKF 121

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
             S+Y +SGGLHGVGISVVNALS ++  TV R    +  +F  G  +    ++ +   + 
Sbjct: 122 GGSSYAVSGGLHGVGISVVNALSTKILTTVKRDGYEWHIEFGNGGKVIQPLRRGEPTEET 181

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK------------EI 251
           GT   F PDP+IF     FD   L    Q  A+L+  ++   + ++            + 
Sbjct: 182 GTVQVFYPDPEIFET-VEFDYETLRTRFQQMAFLNKGLRITITDERPNVTAEGDFVTGDQ 240

Query: 252 AEKYGIPEK----EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE---KKGTHRGTVEW 304
                 P+       + +  GL  Y+    + +            E   +   +   +E 
Sbjct: 241 DGDADSPKVGRRSVSYCYENGLHDYVHFINDTKKSEVVHEEIIDFEASLEDVENAMALEI 300

Query: 305 AIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDD 361
           A+ W       I +Y NTI T EGGTHE G R ALT  + K          +  ++  DD
Sbjct: 301 ALQWTSAYSESIYTYANTINTTEGGTHEEGFRAALTSLMNKIGREKGFIKDKDENLSGDD 360

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
                  ++SV IR P+F GQTKTKL + +A+  V+  +      +   +P E   ++  
Sbjct: 361 CREGLTAVISVKIRNPQFEGQTKTKLGNTEARTFVQQTVYSQLGDWFDAHPAECKAIIAK 420

Query: 422 VIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
                + R   RK R+   RKTA+    +PGKL DCS   A   E+F+VEGDSAGGSA  
Sbjct: 421 AQSAQQARNAARKARDATRRKTALDSFSMPGKLRDCSSRDASDCEIFLVEGDSAGGSAVA 480

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            R+ ++QA+LPLRGKILNV  A  ++  +N++I  L+ A G      +    LRY K+++
Sbjct: 481 GRDPAHQAILPLRGKILNVEKARLDRALDNKEIQSLITAFGTGIGEDFDLSKLRYYKIVL 540

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQK 599
           M DADVDG HI +LLLT  ++ M  LIE  H+FL +PPL+R+    K   + + ++ K K
Sbjct: 541 MADADVDGQHITTLLLTLLFRYMRPLIENGHVFLATPPLYRLKWSNKPHQFVYSDKEKDK 600

Query: 600 ILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
           ++      G    +   I R+KGLGEM A +L ET MD + R L +V +++         
Sbjct: 601 MVSLGLDSGARMPKEGGIQRYKGLGEMSAQELWETTMDPSARLLKQVTMDE----AASAD 656

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           +  + LMG     R  FIQ  A  +  + 
Sbjct: 657 EVFSLLMGEDVSSRRAFIQRNAQDVRFLD 685


>gi|258650278|ref|YP_003199434.1| DNA gyrasesubunit B [Nakamurella multipartita DSM 44233]
 gi|258553503|gb|ACV76445.1| DNA gyrase, B subunit [Nakamurella multipartita DSM 44233]
          Length = 670

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 250/679 (36%), Positives = 369/679 (54%), Gaps = 42/679 (6%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            +  + Y ASSI +LEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +AGYA+ +
Sbjct: 2   TTKKNEYGASSITVLEGLEAVRKRPGMYIGSTGERGLHHLVQEVVDNSVDEAMAGYADRV 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           EV L  +G +TV+DNGRGIPVE HPK   K T+E++LT LHAGGKFD+ +Y +SGGLHGV
Sbjct: 62  EVILRADGGVTVIDNGRGIPVEMHPK-EKKPTVEVVLTVLHAGGKFDSDSYAVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS  L V + R    + Q +    P           ++ G+ +TF PD +IF 
Sbjct: 121 GVSVVNALSTRLDVEIHRDGHAYRQSYRYAKPGPLETI--GPSSRTGSSVTFWPDGEIFE 178

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE-----------------------K 254
               F    + +  Q  A+L+  +      ++                           K
Sbjct: 179 T-VEFKLETISRRLQEMAFLNKGLTITLRDERRTDVELEEIAESGANAVPVEAEPTTPAK 237

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313
              P +  F++PGGL  Y++     +  I   I   +++ +      VE A+ W      
Sbjct: 238 AWKPLERTFHYPGGLVDYIKHLNHTKDPIHPSIVGFESKGET---MEVEVAMQWNSSYNE 294

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMISAVGILS 371
            + S+ NTI T EGGTHE G R +LT  + KY   +    ++   +  +D+      I+S
Sbjct: 295 SVHSFANTINTHEGGTHEEGFRSSLTSVVNKYATDKKLLKEKDDKLSGEDVREGLAAIIS 354

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           + +REP+F GQTK KL + +A+  V+ A  +    +  +NP EA  ++   +  ++ R  
Sbjct: 355 IRLREPQFEGQTKGKLGNTEAKSFVQKACNEWIADWFERNPSEAKTIISKAVSSAQARAA 414

Query: 432 RRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            RK R+ V RK A+    LPGKLADC       +EL+IVEGDSAGGSAK  R+   QA+L
Sbjct: 415 ARKARDLVRRKGALEIGGLPGKLADCRSTDPSKSELYIVEGDSAGGSAKSGRDSMFQAIL 474

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           P+RGKI+NV  A  +++  N ++  L+ ALG      +    LRY K+++M DADVDG H
Sbjct: 475 PIRGKIINVEKARIDRVLRNTEVQSLITALGTGIHDDFDLAKLRYHKIVLMADADVDGQH 534

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGK 609
           I +LLLT  ++ M  L+E  H++L  PPL++I     +  +A+ +  +  ++ E ++ G+
Sbjct: 535 IRTLLLTLLFRFMRPLVEAGHVYLAQPPLYKIKWSKGAHEFAYSDRERDGLIAEGERAGR 594

Query: 610 GKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK 666
             I+   + R+KGLGEM A +L ET MD   R LL+V +           +  + LMG  
Sbjct: 595 RMIKDEGVQRYKGLGEMNAKELWETTMDPANRLLLQVTLED----AATADELFSVLMGED 650

Query: 667 ADERFKFIQERASFIDDVG 685
            + R  FI   A  +  + 
Sbjct: 651 VEARRAFITRNAKDVRFLD 669


>gi|145294048|ref|YP_001136869.1| DNA gyrase subunit B [Corynebacterium glutamicum R]
 gi|140843968|dbj|BAF52967.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 684

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 256/694 (36%), Positives = 373/694 (53%), Gaps = 60/694 (8%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +   NYDASSI ILEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AG+A  +E
Sbjct: 3   NTEHNYDASSITILEGLEAVRKRPGMYIGSTGPRGLHHLIWEVVDNSVDEAMAGHATKVE 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+L  +G + VVD+GRGIPV+ HP      T+++++T LHAGGKFD+ +Y +SGGLHGVG
Sbjct: 63  VTLLEDGGVQVVDDGRGIPVDMHP--SGAPTVQVVMTQLHAGGKFDSDSYAVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           ISVVNALS  +   +      + Q F + +P   +E         GT I F PD +IF  
Sbjct: 121 ISVVNALSTRVEADIKLHGKHWYQNFEKSVPDELIE--GGNARGTGTTIRFWPDAEIFET 178

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE---------------- 262
              FD   + +  Q  A+L+  +    + ++   E+  +    E                
Sbjct: 179 T-EFDFETISRRLQEMAFLNKGLTITLTDNRATDEELELEALAEQGETATELSLDEIDNE 237

Query: 263 ----------------------FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                                 F++P GL+ Y+Q    +++ I   I + + +       
Sbjct: 238 TELVEETTDAPKKPKKREKKKIFHYPNGLEDYVQYLNRSKTNIHPSIVSFEAKGDDH--- 294

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISI 357
            VE A+ W       + ++ NTI T EGGTHE G R ALT  + +YA   +   ++  ++
Sbjct: 295 EVEVAMQWNSSYKESVHTFANTINTREGGTHEEGFRSALTSLMNRYAREHKLLKEKEANL 354

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD       ++SV + +P+F GQTKTKL + + +  V+    +   H+L  NP EA  
Sbjct: 355 TGDDCREGLSAVISVRVGDPQFEGQTKTKLGNTEIKSFVQRMANEHIGHWLEANPAEAKV 414

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   +  ++ RL  RK R+ V RK+A     LPGKLADC       +EL+IVEGDSAGG
Sbjct: 415 IINKAVGSAQARLAARKARDLVRRKSATDLGGLPGKLADCRSKDPEKSELYIVEGDSAGG 474

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKILNV  A  +K+  N ++  ++ ALG     ++    LRY 
Sbjct: 475 SAKSGRDSMFQAILPLRGKILNVEKARLDKVLKNAEVQAIITALGTGIHDEFDINKLRYH 534

Query: 537 KVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEE 595
           K+++M DADVDG HIA+LLLT  ++ M DL+ + H++L  PPL+++     +  +A+ +E
Sbjct: 535 KIVLMADADVDGQHIATLLLTLLFRFMPDLVAEGHVYLAQPPLYKLKWQRGEPGFAYSDE 594

Query: 596 HKQKILEEFKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651
            + + L E    G+ KI     I R+KGLGEM AS+L ET MD   R L RV+I      
Sbjct: 595 ERDEQLNEGLAAGR-KINKDDGIQRYKGLGEMNASELWETTMDPTVRILRRVDITD---- 649

Query: 652 LKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +   +  + LMG     R  FI   A  +  + 
Sbjct: 650 AQRADELFSILMGDDVVARRSFITRNAKDVRFLD 683


>gi|148992476|ref|ZP_01822171.1| DNA gyrase subunit B [Streptococcus pneumoniae SP9-BS68]
 gi|149021676|ref|ZP_01835707.1| DNA gyrase subunit B [Streptococcus pneumoniae SP23-BS72]
 gi|168489810|ref|ZP_02714009.1| DNA gyrase, B subunit [Streptococcus pneumoniae SP195]
 gi|237649436|ref|ZP_04523688.1| DNA gyrase subunit B [Streptococcus pneumoniae CCRI 1974]
 gi|307127642|ref|YP_003879673.1| DNA gyrase subunit B [Streptococcus pneumoniae 670-6B]
 gi|73916238|gb|AAZ92987.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916272|gb|AAZ93004.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916274|gb|AAZ93005.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916292|gb|AAZ93014.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916324|gb|AAZ93030.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|147928793|gb|EDK79806.1| DNA gyrase subunit B [Streptococcus pneumoniae SP9-BS68]
 gi|147930137|gb|EDK81123.1| DNA gyrase subunit B [Streptococcus pneumoniae SP23-BS72]
 gi|183571773|gb|EDT92301.1| DNA gyrase, B subunit [Streptococcus pneumoniae SP195]
 gi|301793963|emb|CBW36359.1| DNA gyrase subunit B [Streptococcus pneumoniae INV104]
 gi|306484704|gb|ADM91573.1| DNA gyrase, B subunit [Streptococcus pneumoniae 670-6B]
 gi|332073065|gb|EGI83544.1| DNA gyrase, B subunit [Streptococcus pneumoniae GA17570]
          Length = 648

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 250/648 (38%), Positives = 374/648 (57%), Gaps = 22/648 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I+V 
Sbjct: 10  AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVF 69

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGVG S
Sbjct: 70  IEPDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 128

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L V V +   I  Q++ RG  ++ LE      ++ GT + F PDPKIF +  
Sbjct: 129 VVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFIPDPKIFTETT 187

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD  +L K  Q  A+L+  ++   +  ++  E     + + +++ GG+ +Y++   EN+
Sbjct: 188 TFDFDKLNKRIQELAFLNRGLQISITDKRQGLE-----QTKHYHYEGGIASYVEYINENK 242

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
            +I         E       TVE A+ +     E   S+ N I T EGGTHE G R ALT
Sbjct: 243 DVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALT 299

Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA   +  +    ++  +D+      ++SV    P+F GQTKTKL + +  +   
Sbjct: 300 RVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 359

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
               + F  +L++NP  A +++E  ++        +R +    +K+ +    LPGKLADC
Sbjct: 360 RLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADC 419

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I  L
Sbjct: 420 SSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 479

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    +++     RY+K+++MTDADVDGAHI +LLLT  Y+ M  ++E  ++++  
Sbjct: 480 FTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQ 539

Query: 577 PPLFRITQGTKSV-YAHDEEHKQKILEEFKK---HGKGKIEISRFKGLGEMLASQLKETA 632
           PP++ +  G++   Y      ++  L+E       G+ K  I R+KGLGEM   QL ET 
Sbjct: 540 PPIYGVKVGSEIKEYIQPGADQEIKLQEALARYSEGRTKPTIQRYKGLGEMDDHQLWETT 599

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           MD   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 600 MDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643


>gi|21322770|dbj|BAB97399.1| DNA gyrase (topoisomerase II) B subunit [Corynebacterium glutamicum
           ATCC 13032]
          Length = 711

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 253/693 (36%), Positives = 371/693 (53%), Gaps = 58/693 (8%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +   NYDASSI ILEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AG+A  +E
Sbjct: 30  NTEHNYDASSITILEGLEAVRKRPGMYIGSTGPRGLHHLIWEVVDNSVDEAMAGHATKVE 89

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+L  +G + VVD+GRGIPV+ HP      T+++++T LHAGGKFD+ +Y +SGGLHGVG
Sbjct: 90  VTLLEDGGVQVVDDGRGIPVDMHP--SGAPTVQVVMTQLHAGGKFDSDSYAVSGGLHGVG 147

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           ISVVNALS  +   +      + Q F + +P   +E         GT I F PD +IF  
Sbjct: 148 ISVVNALSTRVEADIKLHGKHWYQNFEKSVPDELIE--GGNARGTGTTIRFWPDAEIFET 205

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE---------------- 262
              FD   + +  Q  A+L+  +    + ++   E+  +    E                
Sbjct: 206 T-EFDFETISRRLQEMAFLNKGLTITLTDNRATDEELELEALAEQGETATELSLDEIDNE 264

Query: 263 ----------------------FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                                 F++P GL+ Y+     +++ I   I + + +       
Sbjct: 265 TELVEETTDAPKKPKKREKKKIFHYPNGLEDYVHYLNRSKTNIHPSIVSFEAKGDDH--- 321

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISI 357
            VE A+ W       + ++ NTI T EGGTHE G R ALT  + +YA   +   ++  ++
Sbjct: 322 EVEVAMQWNSSYKESVHTFANTINTREGGTHEEGFRSALTSLMNRYAREHKLLKEKEANL 381

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD       ++SV + +P+F GQTKTKL + + +  V+    +   H+L  NP EA  
Sbjct: 382 TGDDCREGLSAVISVRVGDPQFEGQTKTKLGNTEIKSFVQRMANEHIGHWLEANPAEAKV 441

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   +  ++ RL  RK R+ V RK+A     LPGKLADC       +EL+IVEGDSAGG
Sbjct: 442 IINKAVGSAQARLAARKARDLVRRKSATDLGGLPGKLADCRSKDPEKSELYIVEGDSAGG 501

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKILNV  A  +K+  N ++  ++ ALG     ++    LRY 
Sbjct: 502 SAKSGRDSMFQAILPLRGKILNVEKARLDKVLKNAEVQAIITALGTGIHDEFDINKLRYH 561

Query: 537 KVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEE 595
           K+++M DADVDG HIA+LLLT  ++ M DL+ + H++L  PPL+++     +  +A+ +E
Sbjct: 562 KIVLMADADVDGQHIATLLLTLLFRFMPDLVAEGHVYLAQPPLYKLKWQRGEPGFAYSDE 621

Query: 596 HKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652
            + + L E    G+   +   I R+KGLGEM AS+L ET MD   R L RV+I       
Sbjct: 622 ERDEQLNEGLAAGRKINKDDGIQRYKGLGEMNASELWETTMDPTVRILRRVDITD----A 677

Query: 653 KDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +   +  + LMG     R  FI   A  +  + 
Sbjct: 678 QRADELFSILMGDDVVARRSFITRNAKDVRFLD 710


>gi|73916264|gb|AAZ93000.1| DNA gyrase subunit B [Streptococcus pneumoniae]
          Length = 648

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 250/648 (38%), Positives = 374/648 (57%), Gaps = 22/648 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I+V 
Sbjct: 10  AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVF 69

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGVG S
Sbjct: 70  IEPDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 128

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L V V +   I  Q++ RG  ++ LE      ++ GT + F PDP+IF +  
Sbjct: 129 VVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFTPDPEIFTETT 187

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD  +L K  Q  A+L+  ++   +  ++  E     + + +++ GG+ +Y++   ENR
Sbjct: 188 IFDFDKLNKRIQELAFLNRGLQISITDKRQGLE-----QTKHYHYEGGIASYVEYINENR 242

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
            +I         E       TVE A+ +     E   S+ N I T EGGTHE G R ALT
Sbjct: 243 DVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALT 299

Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA   +  +    ++  +D+      ++SV    P+F GQTKTKL + +  +   
Sbjct: 300 RVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVIKITN 359

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
               + F  +L++NP  A +++E  ++        +R +    +K+ +    LPGKLADC
Sbjct: 360 RLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADC 419

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I  L
Sbjct: 420 SSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 479

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    +++     RY+K+++MTDADVDGAHI +LLLT  Y+ M  ++E  ++++  
Sbjct: 480 FTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQ 539

Query: 577 PPLFRITQGTKSV-YAHDEEHKQKILEEFKK---HGKGKIEISRFKGLGEMLASQLKETA 632
           PP++ +  G++   Y      ++  L+E       G+ K  I R+KGLGEM   QL ET 
Sbjct: 540 PPIYGVKVGSEIKEYIQPGADQEIKLQEALARYSEGRTKPTIQRYKGLGEMDDHQLWETT 599

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           MD   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 600 MDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643


>gi|322388186|ref|ZP_08061790.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           infantis ATCC 700779]
 gi|321140858|gb|EFX36359.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
           infantis ATCC 700779]
          Length = 648

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 252/653 (38%), Positives = 376/653 (57%), Gaps = 24/653 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
               + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ 
Sbjct: 6   KNQQAQDYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASH 65

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV ++ +  +TV+D+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHG
Sbjct: 66  IEVFIEPDDSITVIDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHG 124

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS +L V V +   I  Q++ RG  ++ LE      +K GT + F PDP+IF
Sbjct: 125 VGSSVVNALSTQLDVRVHKNGKIHYQEYRRGHVVADLEVIGDT-DKTGTIVHFTPDPEIF 183

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   FD  +L K  Q  A+L+  ++   +  +E  E     + + +++ GG+ +Y++  
Sbjct: 184 TETTTFDFDKLNKRIQELAFLNRGLQISITDKREGLE-----QTKHYHYEGGIASYVEYI 238

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335
            EN+ +I         E +     TVE A+ +     E   S+ N I T EGGTHE G R
Sbjct: 239 NENKDVIFDTPIYTDGEMEDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFR 295

Query: 336 VALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR I  YA   +  +    ++  +D+      ++SV    P+F GQTKTKL + +  
Sbjct: 296 TALTRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVV 355

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
           +       D F  +L++NP  A +++E  ++        +R +    +K+ +    LPGK
Sbjct: 356 KITNRLFSDAFSDFLLENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGK 415

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++
Sbjct: 416 LADCSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEE 475

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  L  A+G    +++     RY+K++IMTDADVDGAHI +LLLT  Y+ M  ++E  ++
Sbjct: 476 IRSLFTAMGTGFGAEFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYV 535

Query: 573 FLISPPLFRITQGTKSV-YAHD--EEH--KQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           ++  PP++ +  G++   Y     ++    Q+ L  +   G+ K  I R+KGLGEM   Q
Sbjct: 536 YIAQPPIYGVKVGSEIKEYIQPGADQEIRLQEALARYS-EGRSKPTIQRYKGLGEMDDHQ 594

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 595 LWETTMNPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643


>gi|255975795|ref|ZP_05426381.1| gram positive topoisomerase IV [Enterococcus faecalis T2]
 gi|255968667|gb|EET99289.1| gram positive topoisomerase IV [Enterococcus faecalis T2]
          Length = 666

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 235/639 (36%), Positives = 345/639 (53%), Gaps = 33/639 (5%)

Query: 55  LEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGR 114
           +E VR RPGMYIG TD + LHHL  E++DNA+DE ++GY N I V++  +  + V D+GR
Sbjct: 1   MEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGNEINVTIQKDNSICVADSGR 60

Query: 115 GIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA 174
           G+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SVVNALS  L V + 
Sbjct: 61  GMPTGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSKWLEVHIV 118

Query: 175 RQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
           R    + ++F  G  P+  L+K  K + + GT +TF PD  IF     F    L +  + 
Sbjct: 119 RDGVEYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDDTIFSTTN-FSYEILAERLRE 177

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            A+L   VK   +  +    K      E F++  G+K ++    E +  ++  +      
Sbjct: 178 SAFLLKGVKITLTDGRGEELKE-----EVFHYEEGIKEFVAYLNEEKDTLTPVV-YFSGA 231

Query: 294 KKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350
           K+G     VE A  + +   E   S+ N + T +GGTHE G++ ++T+   +YA      
Sbjct: 232 KEGI---EVELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKAYNEYARKVGLL 288

Query: 351 NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
            ++  ++   D       +LS+ + E   +F GQTK KL +  A+  V+N + +    YL
Sbjct: 289 KEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLARTVVDNVVGEQMGFYL 348

Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLADCSQNIAHGTE 465
            +N   +  L+   I+  E R   RK RE +R    RK     L GKL           E
Sbjct: 349 QENSEMSQSLIRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNE 408

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
           L++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I  N++I  ++  +G    
Sbjct: 409 LYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVG 468

Query: 526 SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG 585
            ++  ED  Y+K+IIMTDAD DGAHI  LLLTFFY+ M  LIE   +++  PPL+++++G
Sbjct: 469 PEFSIEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKG 528

Query: 586 --TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
              KSV  YA  +    +++++  K       + R+KGLGEM A QL ET MD   RTL+
Sbjct: 529 TGKKSVIEYAWTDGELAEVIDKVGK----GYMLQRYKGLGEMNAEQLWETTMDPETRTLI 584

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           RV I+         +  +  LMG K + R K+I++   F
Sbjct: 585 RVRIDD----AAQAERRVTTLMGDKVEPRRKWIEQHVQF 619


>gi|225861290|ref|YP_002742799.1| DNA gyrase subunit B [Streptococcus pneumoniae Taiwan19F-14]
 gi|298255372|ref|ZP_06978958.1| DNA gyrase subunit B [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503188|ref|YP_003725128.1| DNA topoisomerase [Streptococcus pneumoniae TCH8431/19A]
 gi|73916290|gb|AAZ93013.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916294|gb|AAZ93015.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916296|gb|AAZ93016.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|225727003|gb|ACO22854.1| DNA gyrase, B subunit [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238783|gb|ADI69914.1| DNA topoisomerase (ATP-hydrolyzing) [Streptococcus pneumoniae
           TCH8431/19A]
          Length = 648

 Score =  582 bits (1500), Expect = e-164,   Method: Composition-based stats.
 Identities = 249/648 (38%), Positives = 374/648 (57%), Gaps = 22/648 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I+V 
Sbjct: 10  AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVF 69

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGVG S
Sbjct: 70  IEPDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 128

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L V V +   I  Q++ RG  ++ LE      ++ GT + F PDPKIF +  
Sbjct: 129 VVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFIPDPKIFTETT 187

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD  +L K  Q  A+L+  ++   +  ++  E     + + +++ GG+ +Y++   EN+
Sbjct: 188 TFDFDKLNKRIQELAFLNRGLQISITDKRQGLE-----QTKHYHYEGGIASYVEYINENK 242

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
            +I         E       TVE A+ +     E   S+ N I T EGGTHE G R +LT
Sbjct: 243 DVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTSLT 299

Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA   +  +    ++  +D+      ++SV    P+F GQTKTKL + +  +   
Sbjct: 300 RVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 359

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
               + F  +L++NP  A +++E  ++        +R +    +K+ +    LPGKLADC
Sbjct: 360 RLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADC 419

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I  L
Sbjct: 420 SSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 479

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    +++     RY+K+++MTDADVDGAHI +LLLT  Y+ M  ++E  ++++  
Sbjct: 480 FTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQ 539

Query: 577 PPLFRITQGTKSV-YAHDEEHKQKILEEFKK---HGKGKIEISRFKGLGEMLASQLKETA 632
           PP++ +  G++   Y      ++  L+E       G+ K  I R+KGLGEM   QL ET 
Sbjct: 540 PPIYGVKVGSEIKEYIQPGADQEIKLQEALARYSEGRTKPTIQRYKGLGEMDDHQLWETT 599

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           MD   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 600 MDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643


>gi|227541366|ref|ZP_03971415.1| DNA gyrase subunit B [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227182917|gb|EEI63889.1| DNA gyrase subunit B [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 691

 Score =  582 bits (1500), Expect = e-164,   Method: Composition-based stats.
 Identities = 252/689 (36%), Positives = 367/689 (53%), Gaps = 58/689 (8%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +YDA+SI +LEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AG+A+ ++V L 
Sbjct: 14  DYDATSITVLEGLEAVRKRPGMYIGSTGRRGLHHLVWEVVDNSIDEALAGFADKVDVVLH 73

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G + V DNGRGIPVE H     + T+E+++T LHAGGKF+N +Y++SGGLHGVGISVV
Sbjct: 74  EDGSVEVTDNGRGIPVEMH--QTGRPTVEVVMTQLHAGGKFNNDSYKVSGGLHGVGISVV 131

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  +   + R    + Q+F+  +P    +         GTRI F PD +IF     F
Sbjct: 132 NALSTRVEADIKRDGYHWYQRFNNQVPDDLEK--GGKARGTGTRIRFWPDAEIFETV-EF 188

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIA------------------------------ 252
           +   +    Q  A+L+  V    +  ++                                
Sbjct: 189 NYKTISDRLQQMAFLNKGVYIKLTDKRKHIIAEEEKPSLEADESLLEADSLSLDEVDEKL 248

Query: 253 -EKYGIPEKEE-------FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
            EK    E E        F++P GL  Y++   + ++ +     T    +       +E 
Sbjct: 249 AEKPQAEEPEIPSERSVVFHYPDGLIDYVKFLNKKKTALHP---TIVGFQDSEDDLALEV 305

Query: 305 AIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDD 361
           A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++   +  DD
Sbjct: 306 ALQWNTSYKENVFTFANTIATVEGGTHEEGFRAALTTIMNKYARDHKLMKEKDPKLTGDD 365

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
                  ++SV + +P+F GQTKTKL + + +  V+  +     H+   NP EA  +++ 
Sbjct: 366 CREGLSAVVSVKVGDPQFEGQTKTKLGNTNVKSFVQRVVNTHLTHWFEANPAEAKIIVQK 425

Query: 422 VIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
               ++ RL  RK RE V RK+      LPGKLADC       +EL+IVEGDSAGGSAK 
Sbjct: 426 ASSSAQARLAARKARELVRRKSPTDMGGLPGKLADCRSKDPEKSELYIVEGDSAGGSAKA 485

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            R+   QA+LPLRGKILNV  A  ++   N +I  ++ ALG     ++    LRY K+++
Sbjct: 486 GRDSMFQAILPLRGKILNVEKARLDRAFKNAEIQAIITALGTGVHDEFDISKLRYHKIVL 545

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQK 599
           M DADVDG HIA+LLLT  ++ M  LIE+ H++L +PPL+++        +A+ ++ +  
Sbjct: 546 MADADVDGQHIATLLLTLLFRFMPALIEEGHVYLANPPLYKLKWQKGDPGFAYSDQERDD 605

Query: 600 ILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
           +L E  + G+       I R+KGLGEM AS+L ET +D + RTL RV    DL   +   
Sbjct: 606 LLAEGLEAGRKINTDDGIQRYKGLGEMNASELWETTLDPDFRTLRRV----DLEDAERAD 661

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           +  + LMG     R  FI   A  +  + 
Sbjct: 662 ELFSILMGDDVVARRTFITRNAKDVRFLD 690


>gi|19551255|ref|NP_599257.1| DNA gyrase subunit B [Corynebacterium glutamicum ATCC 13032]
 gi|62388898|ref|YP_224300.1| DNA gyrase subunit B [Corynebacterium glutamicum ATCC 13032]
 gi|41324231|emb|CAF18571.1| DNA GYRASE SUBUNIT B [Corynebacterium glutamicum ATCC 13032]
          Length = 684

 Score =  582 bits (1500), Expect = e-164,   Method: Composition-based stats.
 Identities = 253/693 (36%), Positives = 371/693 (53%), Gaps = 58/693 (8%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +   NYDASSI ILEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AG+A  +E
Sbjct: 3   NTEHNYDASSITILEGLEAVRKRPGMYIGSTGPRGLHHLIWEVVDNSVDEAMAGHATKVE 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+L  +G + VVD+GRGIPV+ HP      T+++++T LHAGGKFD+ +Y +SGGLHGVG
Sbjct: 63  VTLLEDGGVQVVDDGRGIPVDMHP--SGAPTVQVVMTQLHAGGKFDSDSYAVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           ISVVNALS  +   +      + Q F + +P   +E         GT I F PD +IF  
Sbjct: 121 ISVVNALSTRVEADIKLHGKHWYQNFEKSVPDELIE--GGNARGTGTTIRFWPDAEIFET 178

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE---------------- 262
              FD   + +  Q  A+L+  +    + ++   E+  +    E                
Sbjct: 179 T-EFDFETISRRLQEMAFLNKGLTITLTDNRATDEELELEALAEQGETATELSLDEIDNE 237

Query: 263 ----------------------FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                                 F++P GL+ Y+     +++ I   I + + +       
Sbjct: 238 TELVEETTDAPKKPKKREKKKIFHYPNGLEDYVHYLNRSKTNIHPSIVSFEAKGDDH--- 294

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISI 357
            VE A+ W       + ++ NTI T EGGTHE G R ALT  + +YA   +   ++  ++
Sbjct: 295 EVEVAMQWNSSYKESVHTFANTINTREGGTHEEGFRSALTSLMNRYAREHKLLKEKEANL 354

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD       ++SV + +P+F GQTKTKL + + +  V+    +   H+L  NP EA  
Sbjct: 355 TGDDCREGLSAVISVRVGDPQFEGQTKTKLGNTEIKSFVQRMANEHIGHWLEANPAEAKV 414

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   +  ++ RL  RK R+ V RK+A     LPGKLADC       +EL+IVEGDSAGG
Sbjct: 415 IINKAVGSAQARLAARKARDLVRRKSATDLGGLPGKLADCRSKDPEKSELYIVEGDSAGG 474

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKILNV  A  +K+  N ++  ++ ALG     ++    LRY 
Sbjct: 475 SAKSGRDSMFQAILPLRGKILNVEKARLDKVLKNAEVQAIITALGTGIHDEFDINKLRYH 534

Query: 537 KVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEE 595
           K+++M DADVDG HIA+LLLT  ++ M DL+ + H++L  PPL+++     +  +A+ +E
Sbjct: 535 KIVLMADADVDGQHIATLLLTLLFRFMPDLVAEGHVYLAQPPLYKLKWQRGEPGFAYSDE 594

Query: 596 HKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652
            + + L E    G+   +   I R+KGLGEM AS+L ET MD   R L RV+I       
Sbjct: 595 ERDEQLNEGLAAGRKINKDDGIQRYKGLGEMNASELWETTMDPTVRILRRVDITD----A 650

Query: 653 KDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +   +  + LMG     R  FI   A  +  + 
Sbjct: 651 QRADELFSILMGDDVVARRSFITRNAKDVRFLD 683


>gi|309809880|ref|ZP_07703730.1| DNA topoisomerase IV, B subunit [Lactobacillus iners SPIN
           2503V10-D]
 gi|308169832|gb|EFO71875.1| DNA topoisomerase IV, B subunit [Lactobacillus iners SPIN
           2503V10-D]
          Length = 647

 Score =  582 bits (1500), Expect = e-164,   Method: Composition-based stats.
 Identities = 251/655 (38%), Positives = 357/655 (54%), Gaps = 33/655 (5%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            + ++ YD SSI+IL GLE VR RPGMYIG TD + L+HL  E++DN++DE +AG+   I
Sbjct: 2   TNLNNTYDDSSIQILHGLEAVRKRPGMYIGSTDRQGLNHLVYEILDNSVDEAMAGFGKEI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V++  +  ++V D GRG+P   H       T+E+ILT LHAGGKF    Y+ SGGLHGV
Sbjct: 62  NVTIHPDNSVSVQDFGRGMPTGMH--ASGLPTIEVILTVLHAGGKFTEKNYQTSGGLHGV 119

Query: 158 GISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           G SVVNALS+ L V V R    F ++F   G P+  L+K     +K GT ITF+PD KIF
Sbjct: 120 GSSVVNALSEWLKVRVVRDGQAFEEEFVDGGKPVGTLKKLGATSDKTGTLITFKPDSKIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                +    + +  +  A+L   V+   + +++   K      +EFY+  G+K+++   
Sbjct: 180 STTI-YKYETIQERLREAAFLLKGVRFTLTDERDPQRK------DEFYYDDGIKSFVSYL 232

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335
            E++  I    F  + E        VE++  + +   E   S+ N + T +GG+HE+G R
Sbjct: 233 NEDKDTIGDI-FYFEGEIDNI---KVEFSGQYNDGYSENVVSFVNNVRTIDGGSHEAGAR 288

Query: 336 VALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLD 391
              TR    YA+     +         D       +LSV I E   EF GQTK KL +  
Sbjct: 289 SGFTRAFNDYAKKQGLLKTKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQ 348

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR--L 449
           A+  V+N + +   +YL++N   A KL++      E R   +K R+ +R    RK +  L
Sbjct: 349 ARSVVDNIIYEQLSYYLMENGEFAQKLVQKAQRAREAREAAKKARDESRSGKKRKKKEVL 408

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
            GKL      I    ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + I  
Sbjct: 409 SGKLTPAQSRIPEKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKARLQDIFK 468

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N++I  ++  +G      +   D  Y K+IIMTDAD DGAHI  LLLTFFY+ M  +IE 
Sbjct: 469 NEEINTMIHTIGAGVGPDFEIADANYNKIIIMTDADTDGAHIQILLLTFFYRYMKPMIEA 528

Query: 570 KHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
             +++  PPL+++ +G        Y+  +E  QK ++EF K       + RFKGLGEM A
Sbjct: 529 GRVYIALPPLYKLEKGQGKNVDIKYSWTDEELQKNVKEFGK----GYSLQRFKGLGEMNA 584

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            QL ET M+ N RTL+RV+I+         +  +  LMG K   R K+I E   F
Sbjct: 585 DQLWETTMNPNTRTLIRVKIDD----AALAEHRVTTLMGDKVAARRKWIDENVKF 635


>gi|157825436|ref|YP_001493156.1| DNA topoisomerase IV subunit B [Rickettsia akari str. Hartford]
 gi|157799394|gb|ABV74648.1| DNA topoisomerase IV subunit B [Rickettsia akari str. Hartford]
          Length = 662

 Score =  582 bits (1500), Expect = e-164,   Method: Composition-based stats.
 Identities = 334/660 (50%), Positives = 448/660 (67%), Gaps = 12/660 (1%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +    N+   +NY A  I +LEGLEPVR RPGMYIGGTD  A+HHL SEV+DNAMDE +A
Sbjct: 8   NKEKKNKLVDNNYSAKDIEVLEGLEPVRKRPGMYIGGTDSNAMHHLVSEVLDNAMDEALA 67

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+A++I + +  +  +T+ DNGRGIP++NHPKFP+KS LE+ILTTLH+GGKF N+ Y  +
Sbjct: 68  GFASIITIKMHQDHSITIFDNGRGIPIDNHPKFPDKSALEVILTTLHSGGKFSNNVYHTA 127

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVGISVVNALS  L + V +Q  ++SQ +S+G  L+ L  +E  +  RGT I F P
Sbjct: 128 GGLHGVGISVVNALSKHLEIKVYKQGKLYSQSYSQGKKLTDLICEESYKRLRGTSINFTP 187

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           DP+IF +K  F+  ++ ++ +SKAYL   V   W C+ E+     IP+K    FP GLK 
Sbjct: 188 DPEIFSEKLHFNPKKIYELARSKAYLYRGVTIEWECEVEVL--SDIPKKALINFPNGLKD 245

Query: 272 YLQTKLENRSLISSEIFTGKTEK-KGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330
           YL +K+   +LI  EIF+G  E      +          + +  I SYCNT+ T +GGTH
Sbjct: 246 YLSSKITLDNLIIPEIFSGNVESTPDGIKLEWAICWQNNDNSAFIQSYCNTVTTPQGGTH 305

Query: 331 ESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           E GL+ A+ RG+K Y E+  NK+A ++  +D++ +A  +LS+FI EP F GQTK KLVS 
Sbjct: 306 EQGLKSAILRGLKAYGEMIGNKKAANLTIEDILETACVVLSIFIAEPSFQGQTKEKLVSN 365

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
              + VEN ++D FDH+L  +   AT LLE VI  +E R+ ++ ++ ++RK A +KLRLP
Sbjct: 366 GVSKPVENIIKDHFDHFLSSDKALATNLLEHVIAIAEFRISKKNEKNISRKNATQKLRLP 425

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC++    GTELFIVEGDSAGGSAKQARNR  QAVLPL GK+LNVAS+  EKI NN
Sbjct: 426 GKLADCTRTSPEGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSTLEKIVNN 485

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           Q I DL  AL C +   Y++E+LRYEK+IIMTDADVDGAHIASLL+TFF+  M  L+E+ 
Sbjct: 486 QAIQDLEIALACGSLKNYKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEEG 545

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           HL+L  PPL+R+TQ  K+ YA DEE K K++ +  K  K KIE+ RFKGLGEM+ +QLKE
Sbjct: 546 HLYLAKPPLYRLTQSNKTYYAGDEEEKAKLMGKLSKASKAKIEVGRFKGLGEMMPAQLKE 605

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA-----SFIDDVG 685
           T M   KR+LL V +       ++    ++ LMG K ++RF+FI E+A       I+++ 
Sbjct: 606 TTMHPEKRSLLNVTLED----FQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIINELD 661


>gi|331701470|ref|YP_004398429.1| DNA topoisomerase IV subunit B [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128813|gb|AEB73366.1| DNA topoisomerase IV, B subunit [Lactobacillus buchneri NRRL
           B-30929]
          Length = 651

 Score =  582 bits (1500), Expect = e-164,   Method: Composition-based stats.
 Identities = 251/655 (38%), Positives = 363/655 (55%), Gaps = 33/655 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
                YD SSI+ILEGL+ VR RPGMYIG TD + LHHL  E++DNA+DEV+AGY + I+
Sbjct: 3   KQKQKYDDSSIQILEGLDAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEVLAGYGDEID 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           VS+  +  +TVVD+GRG+P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG
Sbjct: 63  VSIHKDNSITVVDHGRGMPTGMH--ASGKPTPEVILTMLHAGGKFGQGGYKTSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
            SVVNALS  L V + R    + + F   G P+  L+K  K R   GT +TF+PDP IF 
Sbjct: 121 ASVVNALSTWLKVVIVRDGYRYEEDFKNGGHPVGTLKKLGKTRAHSGTTVTFKPDPTIFT 180

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               ++ + L +  +  A+L    K   + ++   E     +++ F++  G+K ++Q   
Sbjct: 181 STV-YNFSVLSERLRESAFLLKGTKITLTDERTDQE-----QEDVFHYEEGIKEFVQYLN 234

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           E++     ++     +K G     VE A  + +     + S+ N + T +GGTHE+GLR 
Sbjct: 235 EDK-HTLGDVMYFDGKKDGV---EVEVAAQYNDGYSETMLSFVNNVRTKDGGTHEAGLRN 290

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392
           A T+    YA       ++  ++   D+      +LS+ I E   +F GQTK KL + +A
Sbjct: 291 AWTKAFNDYARKVGMLKEKDKNLEGSDVREGLSVVLSLRIPEEILQFEGQTKEKLGTPEA 350

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---L 449
           +  V+N + +   +YL++N   A  L+   +   + R   RK R+  R     K +   L
Sbjct: 351 RSIVDNVVSEKLGYYLMENGEFAQTLVHKALRARQARQAARKARDETRTGKRHKKQERLL 410

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
            GKL           ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A   +I  
Sbjct: 411 SGKLTPAQSKDYSRNELFLVEGDSAGGSAKQGRDRRYQAILPLRGKVLNTERAKLPEIMK 470

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N++I  ++  +G    + +  +D  Y+K+IIMTDAD DGAHI  LLLTFFY+ M  +I+ 
Sbjct: 471 NEEINTMIYTIGAGVGADFNIDDANYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIDN 530

Query: 570 KHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
             +F+  PPL+++ +G     K  YA   E   K+ ++F K       + RFKGLGEM A
Sbjct: 531 GRVFIALPPLYKLQKGAGKKLKVQYAWTNEELNKVSKDFGK----GYSLQRFKGLGEMNA 586

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            QL ET M+ + RTL+RV I+         +  +  LMG K + R K+I+    F
Sbjct: 587 DQLWETTMNPDTRTLIRVRIDD----AALAEKRVTTLMGDKVEPRRKWIEHNVKF 637


>gi|310642463|ref|YP_003947221.1| DNA topoisomerase iv, b subunit [Paenibacillus polymyxa SC2]
 gi|309247413|gb|ADO56980.1| DNA topoisomerase IV, B subunit [Paenibacillus polymyxa SC2]
          Length = 659

 Score =  582 bits (1500), Expect = e-164,   Method: Composition-based stats.
 Identities = 238/668 (35%), Positives = 353/668 (52%), Gaps = 39/668 (5%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
            + A   Q+ +  Y A  I++LEGL  VR RPGMYIG T    LHHL  E++DNA+DE +
Sbjct: 8   SAGASGTQNGASEYGADDIQVLEGLVAVRKRPGMYIGSTSSSGLHHLVWEIVDNAVDEHL 67

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           A + + I++++  +G +TV DNGRGIP   H       T +++ T LHAGGKF  S Y+ 
Sbjct: 68  AKFCSRIDITMHKDGSVTVSDNGRGIPTGMHKM--GIPTPQVVFTILHAGGKFGGSGYKK 125

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR----------GIPLSPLEKKEKVR 200
           SGGLHGVG SV NALS+ L V + R   I  Q+F            G P + LE      
Sbjct: 126 SGGLHGVGASVTNALSEWLEVEIYRDGKIHRQRFEYWQDKKGVEHVGEPTTGLEVLGNTN 185

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
              G++ITF+PD ++F     F+   L +  Q  A+L+  ++     ++         + 
Sbjct: 186 K-TGSKITFKPDIRVFQSGIHFNYDTLAERLQEIAFLNSGLRIQLKDERS-------GKS 237

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCN 320
           +E+++ GG   ++    E + ++   I     ++       +++   + E    I S+ N
Sbjct: 238 DEYFYEGGASQFVSFLNEGKDVLHDVIHFNAEKEDIEVEIAIQYNAGYTET---IASFVN 294

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPE 378
           +I T  GGTHE+G + A TR +  YA       ++  ++  +DL    + ++SV + E E
Sbjct: 295 SIPTRGGGTHETGFKTAYTRIMNDYARKTAMLKEKDKNLEGNDLREGMMAVISVKMAEVE 354

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
           F GQTK +L S  A+ TV+  + +    +L +NP  A  L+   ++ S+ R   RK R+ 
Sbjct: 355 FVGQTKDQLGSASARSTVDAIVSEQMQRFLEENPQIAQTLIRKAVQASKAREAARKARDE 414

Query: 439 NRKTAI--RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
            R          L GKL+          ELFIVEGDSAGGSAKQ R+   QA+LPL+GK 
Sbjct: 415 MRSGKKRSESSNLNGKLSPAQSKDFTRNELFIVEGDSAGGSAKQGRDSKIQAILPLKGKP 474

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556
           +N   +    I  N +   +  A+G    +++  ED  Y K+IIMTDAD DGAHI  LLL
Sbjct: 475 MNPEKSKLADIMKNDEYRAITAAIGAGVGTEFTLEDSNYSKIIIMTDADTDGAHIQVLLL 534

Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKI 612
           TFFY+ M +LI+   +F+  PPL++IT+ +       YA  +E     L+EF ++     
Sbjct: 535 TFFYRYMKELIDAGRIFIAQPPLYKITRKSGKLETVRYAWTDEQLDNYLKEFGRN----F 590

Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
           E+ R+KGLGEM   QL ET M+   RTLLRV+I          +  ++ LMG K D R +
Sbjct: 591 ELQRYKGLGEMNPDQLWETTMNPESRTLLRVQIED----AAKAERRVSTLMGDKVDPRKR 646

Query: 673 FIQERASF 680
           +I E   F
Sbjct: 647 WIVENVDF 654


>gi|148997114|ref|ZP_01824768.1| DNA gyrase, B subunit [Streptococcus pneumoniae SP11-BS70]
 gi|168492965|ref|ZP_02717108.1| DNA gyrase, B subunit [Streptococcus pneumoniae CDC3059-06]
 gi|168575469|ref|ZP_02721405.1| DNA gyrase, B subunit [Streptococcus pneumoniae MLV-016]
 gi|194396954|ref|YP_002037451.1| DNA gyrase subunit B [Streptococcus pneumoniae G54]
 gi|307067411|ref|YP_003876377.1| type IIA topoisomerase subunit B [Streptococcus pneumoniae AP200]
 gi|73916242|gb|AAZ92989.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916254|gb|AAZ92995.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916268|gb|AAZ93002.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|147756814|gb|EDK63854.1| DNA gyrase, B subunit [Streptococcus pneumoniae SP11-BS70]
 gi|183577070|gb|EDT97598.1| DNA gyrase, B subunit [Streptococcus pneumoniae CDC3059-06]
 gi|183578470|gb|EDT98998.1| DNA gyrase, B subunit [Streptococcus pneumoniae MLV-016]
 gi|194356621|gb|ACF55069.1| DNA gyrase, B subunit [Streptococcus pneumoniae G54]
 gi|306408948|gb|ADM84375.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Streptococcus pneumoniae AP200]
          Length = 648

 Score =  582 bits (1499), Expect = e-164,   Method: Composition-based stats.
 Identities = 252/648 (38%), Positives = 374/648 (57%), Gaps = 22/648 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I+V 
Sbjct: 10  AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVF 69

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGVG S
Sbjct: 70  IEPDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 128

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L V V +   I  Q++ RG  ++ LE      +K GT + F PDPKIF +  
Sbjct: 129 VVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEIVGDT-DKTGTTVHFTPDPKIFTETT 187

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD  +L K  Q  A+L+  ++   +  +E  E     + + +++ GG+ +Y++   EN+
Sbjct: 188 IFDFDKLNKRIQELAFLNRGLQISITDKREGLE-----QTKHYHYEGGIASYVEYINENK 242

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
            +I         E       TVE A+ +     E   S+ N I T EGGTHE G R ALT
Sbjct: 243 DVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALT 299

Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA   +  +    ++  +D+      ++SV    P+F GQTKTKL + +  +   
Sbjct: 300 RVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 359

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
               + F  +L++NP  A +++E  ++        +R +    +K+ +    LPGKLADC
Sbjct: 360 RLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADC 419

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I  L
Sbjct: 420 SSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 479

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    +++     RY+K+++MTDADVDGAHI +LLLT  Y+ M  ++E  ++++  
Sbjct: 480 FTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQ 539

Query: 577 PPLFRITQGTKSV-YAHDEEHKQKILEEFKK---HGKGKIEISRFKGLGEMLASQLKETA 632
           PP++ +  G++   Y      ++  L+E       G+ K  I R+KGLGEM   QL ET 
Sbjct: 540 PPIYGVKVGSEIKEYIQPGADQEIKLQEALARYSEGRTKPTIQRYKGLGEMDDHQLWETT 599

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           MD   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 600 MDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643


>gi|304404372|ref|ZP_07386033.1| DNA topoisomerase IV, B subunit [Paenibacillus curdlanolyticus YK9]
 gi|304346179|gb|EFM12012.1| DNA topoisomerase IV, B subunit [Paenibacillus curdlanolyticus YK9]
          Length = 657

 Score =  582 bits (1499), Expect = e-164,   Method: Composition-based stats.
 Identities = 243/666 (36%), Positives = 357/666 (53%), Gaps = 41/666 (6%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A  + SA   YDA  I+ILEGL  VR RPGMYIG T    LHHL  E++DNA+DE +A +
Sbjct: 9   AKESPSAERKYDADDIQILEGLTAVRKRPGMYIGSTSSSGLHHLVWEIVDNAVDEHLAKH 68

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
            + I+V++  +  ++V DNGRGIP   H       T +++ T LHAGGKF    Y+ SGG
Sbjct: 69  CSAIDVTIHKDNSVSVKDNGRGIPTGMHK--SGIPTPQVVFTMLHAGGKFGGGGYKKSGG 126

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSR----------GIPLSPLEKKEKVRNKR 203
           LHGVG SV NALS+ L V + R   +  Q+F            G P++ L       N+ 
Sbjct: 127 LHGVGASVTNALSEWLEVEIYRDGKVHKQRFEYWTDADGKEHVGEPVTGLTIIGNT-NRT 185

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT++TF+PD ++F      +   L +  Q  A+L+  +K     ++   E         F
Sbjct: 186 GTKVTFKPDGRVFQSGTTINFDSLSERLQEIAFLNSGLKVTLKDERSGNE-------VVF 238

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           ++ GG K ++Q   E+++++  E+     EK       VE A+ + +     I S+ N+I
Sbjct: 239 HYEGGAKQFVQFLNEDKTVLH-EVVHFAAEKDEI---EVEIALQYNDGYTETIASFVNSI 294

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFA 380
            T  GGTHE+G + A TR +  YA       ++  ++  +DL    + ++++ + E EF 
Sbjct: 295 PTRGGGTHETGFKTAYTRIMNDYARKNALLKEKDKNLEGNDLREGMMVVINIKMSEVEFV 354

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTK +L S  A+  V+  + D    +L +NP  A  L++  I+ S+ R   RK RE  R
Sbjct: 355 GQTKDQLGSASARSAVDAVVTDKMAVFLEENPQAAQMLMKKAIQASKAREAARKAREEIR 414

Query: 441 KTAIRK--LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
               +     L GKL           ELFIVEGDSAGGSAKQ R+  +QA+LPL+GK +N
Sbjct: 415 SGKKKSESSNLGGKLTPAQSKDIARNELFIVEGDSAGGSAKQGRDSKHQAILPLKGKPMN 474

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
              A    I  N +   ++ A+G     ++  E+  Y K+IIMTDAD DGAHI  LLLTF
Sbjct: 475 PEKAKLLDILKNDEYKAIIAAIGAGVGPEFDGEECNYNKIIIMTDADTDGAHIQVLLLTF 534

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           FY+ M  LI+   +++  PPL+++T+ +       YA  +E  Q  L+EF K+     E+
Sbjct: 535 FYRYMKPLIDAGKVYIAQPPLYKLTRKSGKLETVRYAWTDEQLQNYLKEFGKN----YEL 590

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
            R+KGLGEM   QL ET M+   RTLL+V+I          +  ++ LMG K D R ++I
Sbjct: 591 QRYKGLGEMNPDQLWETTMNPETRTLLQVQIED----AAKAERRVSTLMGDKVDPRKRWI 646

Query: 675 QERASF 680
            +   F
Sbjct: 647 IDNVDF 652


>gi|117924029|ref|YP_864646.1| DNA topoisomerase IV subunit B [Magnetococcus sp. MC-1]
 gi|117607785|gb|ABK43240.1| DNA topoisomerase IV subunit B [Magnetococcus sp. MC-1]
          Length = 649

 Score =  582 bits (1499), Expect = e-164,   Method: Composition-based stats.
 Identities = 304/655 (46%), Positives = 420/655 (64%), Gaps = 18/655 (2%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
           P   + + S++YDAS I +LEGLE +R RPGMYIGGTD +ALHHL +EV+DNAMDE   G
Sbjct: 3   PPAFDGAMSESYDASQIEVLEGLEGIRKRPGMYIGGTDLRALHHLVAEVLDNAMDEAGEG 62

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           +A+ I ++L  +G ++V+DNGRGIPV  HP++P +S LE++ TTLH+GGKF+N  Y  S 
Sbjct: 63  HADKITLTLHKDGSVSVLDNGRGIPVAPHPRYPGQSALEVVFTTLHSGGKFNNDAYATSA 122

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+  V ALS    V V R   +++ +FSRG  +     +     +R TR+ F+PD
Sbjct: 123 GLHGVGVCAVTALSVWTDVQVHRDGYVWNARFSRGK-VETPVVRGDESRRRSTRVQFQPD 181

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P+IF      +  RL++M +S+AYL   V+     + +  E         F+FP GL  +
Sbjct: 182 PEIFPSTI-LNPDRLIEMCRSRAYLQRGVRMTVKLEAKGEEHL-------FHFPNGLSDF 233

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGT-VEWAIAWCEENPEIT-SYCNTILTDEGGTH 330
           ++   ++  L+  + F G+    G    + VEWAI W E +     S+CNT+ T +GG H
Sbjct: 234 IREISKDSRLVVEDPFEGRITGLGDAGKSRVEWAILWDEVDESRLRSHCNTVPTPDGGVH 293

Query: 331 ESGLRVALTRGIKKY-AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           E+G R AL RG++ +        + +++  +D+M   +G++S+FI +P+F+GQTK KL +
Sbjct: 294 EAGFRAALLRGMRDFADSRNMMPKNVALTGEDIMGGMMGVISLFIPDPQFSGQTKDKLTN 353

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448
               R VE+A++D  DH+L   P  AT+L+  +IER++ER+ RRK+   V RK+   +L 
Sbjct: 354 GYVSRMVESAIKDNLDHWLHGQPERATRLVGAMIERAQERINRRKKTPLVKRKSPTSRLT 413

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKL DC +     TELFIVEGDSAGGSAKQAR+R  QA+LPLRGKILNV  A SEK  
Sbjct: 414 LPGKLTDCIKTDPDFTELFIVEGDSAGGSAKQARDRHTQAILPLRGKILNVEQANSEKFE 473

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            N ++  L  A+GC     +    LRY +VIIMTDADVDGAHIASLLLTFFY+ M DL+ 
Sbjct: 474 KNAEVQALTTAIGCGVGRAFDITALRYGRVIIMTDADVDGAHIASLLLTFFYRFMPDLVH 533

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQ 627
           + HL+L  PPLF++T G +SVYA DE  K++++    +     K+EISRFKGLGEM  SQ
Sbjct: 534 RGHLYLAQPPLFKVTVGRESVYALDEHEKERVINRLTRSKPNAKVEISRFKGLGEMPPSQ 593

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           LKET M  + R LLRV ++ D      T D+ ++LMG +  ERFKFIQE A F  
Sbjct: 594 LKETTMQPSSRRLLRVMVDDD----HVTSDTFDRLMGKRPAERFKFIQEHADFAK 644


>gi|154482535|ref|ZP_02024983.1| hypothetical protein EUBVEN_00202 [Eubacterium ventriosum ATCC
           27560]
 gi|149736560|gb|EDM52446.1| hypothetical protein EUBVEN_00202 [Eubacterium ventriosum ATCC
           27560]
          Length = 635

 Score =  582 bits (1499), Expect = e-164,   Method: Composition-based stats.
 Identities = 239/654 (36%), Positives = 366/654 (55%), Gaps = 30/654 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++NYD +SI +LEGL+PVR RPGMYIG    K L+HL  E++DN++DE +AGY + I V+
Sbjct: 2   ANNYDGNSISVLEGLDPVRKRPGMYIGSVGTKGLNHLIYEIVDNSVDEHLAGYCSEITVT 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L+ +G  TV DNGRGIPV+ + +   +  +E++ TTLHAGGKF +  Y+ISGGLHGVG S
Sbjct: 62  LEKDGSATVEDNGRGIPVDINEQV-GRPAVEVVFTTLHAGGKFGDGNYKISGGLHGVGSS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  L V V R   I++Q++ +G     L++  K  +N  GT+++F PD +IF   
Sbjct: 121 VVNALSLWLEVNVKRDGKIYNQRYEQGKVCYDLKEAGKCRKNDTGTKVSFFPDAEIFEKI 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F A  +       AYL+  +   +   +   E+     +       G+K ++    + 
Sbjct: 181 Y-FKADSIKSRLHETAYLNPNLTIIFINKRVGEEEEVTFHE-----ENGIKAFISDMNKE 234

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  + ++I   K E+ G     VE A  +  +    I+ +CN I T EGGTH +G +  L
Sbjct: 235 KEKV-TDIIYFKKEQDGI---EVEIAFQYINDFTENISGFCNNIYTQEGGTHITGFKSIL 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           T  I +YA       ++  +    D+    V +++V   +P F GQTKTKL + DA++  
Sbjct: 291 TSTINQYARELGILKEKDNNFTGADVRNGLVAVVAVKHPDPRFEGQTKTKLDNPDAEKVT 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           ++   +    +  +N      ++    + ++ R    + +      +   +   GKL++C
Sbjct: 351 KSIAGEQLTLFFDKNLETLKNVISCAEKSAKIRKAEERTKTNLLSKSKFSIDSNGKLSNC 410

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
                   E+FIVEGDSAGGSAK ARNR  QA++P+RGKILNV  A  +K+  N +I  +
Sbjct: 411 ESRKPEECEIFIVEGDSAGGSAKSARNRKTQAIMPIRGKILNVEKASMDKVLANAEIKTM 470

Query: 517 VQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           + A GC       + +  E LRY K+I+MTDADVDGAHI +LLLTFFY+ M +LI   H+
Sbjct: 471 INAFGCGFSEGYGNDFDIEKLRYNKIILMTDADVDGAHIDTLLLTFFYRFMPELITHGHI 530

Query: 573 FLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           ++ +PPL+++  +  +  Y +D+    K LE+++KH  G   + R+KGLGEM   QL ET
Sbjct: 531 YIATPPLYKVVPKKGEGEYLYDD----KALEKYRKHHTG-FTLQRYKGLGEMDPKQLWET 585

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            ++   R L +VEI       K   D  + LMG++   R  FI   A+  + + 
Sbjct: 586 TLNPETRILKQVEIED----AKMASDVTSMLMGSEVAPRRNFIYTHATDAE-LD 634


>gi|227831835|ref|YP_002833542.1| DNA gyrase subunit B [Corynebacterium aurimucosum ATCC 700975]
 gi|262183099|ref|ZP_06042520.1| DNA gyrase subunit B [Corynebacterium aurimucosum ATCC 700975]
 gi|227452851|gb|ACP31604.1| DNA gyrase subunit B [Corynebacterium aurimucosum ATCC 700975]
          Length = 681

 Score =  582 bits (1499), Expect = e-163,   Method: Composition-based stats.
 Identities = 255/687 (37%), Positives = 375/687 (54%), Gaps = 58/687 (8%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YDA SI ILEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AGYA+ + V+L  
Sbjct: 7   YDAGSITILEGLEAVRKRPGMYIGSTGARGLHHLIWEIVDNSVDEAMAGYADKVIVTLRE 66

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G + V+DNGRGIPVE H       T+++++T LHAGGKFD+ +Y +SGGLHGVGISVVN
Sbjct: 67  DGGIEVIDNGRGIPVEMH--ASGVPTVQVVMTQLHAGGKFDSESYAVSGGLHGVGISVVN 124

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS  +   + R    + Q F+  IP   +E         GT I F PDP+IF     F+
Sbjct: 125 ALSTRVEADIKRDGKHWYQNFNNAIPDELVE--GDNARGTGTTIRFWPDPEIFETV-EFN 181

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDK---------------------------------- 249
              + +  Q  A+L+  +      ++                                  
Sbjct: 182 YDTIARRLQEMAFLNKGLTIVLRDERAISKEQAELEEIAEAGDSAVSLTSLDEKEKSEEA 241

Query: 250 --EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307
                EK    ++  +++P GL+ Y++   +N++ I   I     + +      VE A+ 
Sbjct: 242 GDGSEEKTSKKKEVTYHYPNGLQDYVEHLNKNKTAIHPTIVAFDVKGEDH---EVEIALQ 298

Query: 308 WCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMI 364
           W +     + ++ NTI T EGGTHE G R ALT  + +YA+  +   ++  ++  DD   
Sbjct: 299 WNQGYKQSVHTFANTINTHEGGTHEEGFRAALTSLMNRYAKEHKLLKEKDGNLSGDDCRE 358

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
               ++SV + +P+F GQTKTKL + + +  V+ ++ +  + +   NP EA  ++   + 
Sbjct: 359 GLAAVISVKVADPQFEGQTKTKLGNSEIRGFVQRSVNEHLNDWFDANPAEAKVIINKAVS 418

Query: 425 RSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483
            +  R+  RK RE V RK+A     LPGKLADC    +  TEL+IVEGDSAGGSAK  R+
Sbjct: 419 SAHARVAARKARELVRRKSAGDLGGLPGKLADCRSKDSKRTELYIVEGDSAGGSAKGGRD 478

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTD 543
              QA+LPLRGKILNV  A  +K+  N ++  ++ ALG     ++    LRY+K+++M D
Sbjct: 479 SMFQAILPLRGKILNVEKARMDKVLKNAEVQAIITALGTGIHEEFDISKLRYDKIVLMAD 538

Query: 544 ADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILE 602
           ADVDG HIA+LLLT  ++ M  L+E  H+FL +PPL+++  G  +  YA  +  + + L 
Sbjct: 539 ADVDGQHIATLLLTLLFRFMPQLVEDGHVFLANPPLYKLKWGKGQPGYAFSDAERDEQLA 598

Query: 603 EFKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           E  + G+ KI     I R+KGLGEM A++L ET +D   R L RV    DL   +   + 
Sbjct: 599 EGLEQGR-KINKDDGIQRYKGLGEMNAAELWETTLDPTTRVLRRV----DLEDAQRADEL 653

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            + LMG     R  FI  RA  +  + 
Sbjct: 654 FSILMGDDVAARRSFITRRAKDVRFLD 680


>gi|118470463|ref|YP_885621.1| DNA gyrase subunit B [Mycobacterium smegmatis str. MC2 155]
 gi|118171750|gb|ABK72646.1| DNA gyrase, B subunit [Mycobacterium smegmatis str. MC2 155]
          Length = 639

 Score =  582 bits (1499), Expect = e-163,   Method: Composition-based stats.
 Identities = 245/655 (37%), Positives = 363/655 (55%), Gaps = 27/655 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           ++ NYDA SI ILEGL+ VR RPGMYIG T E+ LHH+  EV+DN +DE +AG+A  ++V
Sbjct: 2   STTNYDAGSITILEGLDVVRKRPGMYIGSTSERGLHHMVWEVVDNGVDEAMAGHATRVDV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G + V D+GRGIPV  H       T+++++T LHAGGKFD+ +Y++SGGLHGVG+
Sbjct: 62  TLLADGGVQVCDDGRGIPVAMHE--TGIPTVDVVMTQLHAGGKFDSESYQVSGGLHGVGV 119

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS  L V + R    + Q +   +P +            GT + F  DP +F   
Sbjct: 120 SVVNALSTRLEVDIHRDGYEWHQHYDHSVPATLTR--GNPSGGTGTTVRFWADPDVFET- 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             + A  + +  Q  A+L+  +    +  ++       P+   F+ PGGL  Y++     
Sbjct: 177 TTYSAETIARRLQEMAFLNKGLILTLTDQRD-----PEPQTRTFHHPGGLIDYVKHINRV 231

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  I   I   + E  G     VE A+ W       + ++ NTI T EGGTHE G R AL
Sbjct: 232 KDPIQPSIIAFEGEGPGH---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAAL 288

Query: 339 TRGIKKY--AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           T  + +Y   +     +  ++  DD+      ++SV + EP+F GQTKTKL +   +  V
Sbjct: 289 TSVVNRYAKDKKLLKDKDPNLTGDDIREGLAAVISVKVAEPQFEGQTKTKLGNAAIRSFV 348

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
           +    +   H+L  NP+EA  ++  V   ++ R+  RK RE V RK+A     LPGKLAD
Sbjct: 349 QKVCHEQLTHWLEANPVEAKVIITKVASSAQARIAARKARELVRRKSATDIGGLPGKLAD 408

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C       +EL++VEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  
Sbjct: 409 CRSTDPSKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQS 468

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ ALG     ++    LRY K+++M DADVDG HI++LLLT  ++ M  L+E  H+FL 
Sbjct: 469 IITALGTGIHDEFDISKLRYHKIVLMADADVDGQHISTLLLTLLFRFMKPLVENGHIFLA 528

Query: 576 SPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIE----ISRFKGLGEMLASQLKE 630
            PPL+++     +  +A+ +  +  +LE  +  GK KI     I R+KGLGEM A +L E
Sbjct: 529 QPPLYKLKWQRSEPEFAYSDRERDGLLEAGRAAGK-KINVDDGIQRYKGLGEMDAKELWE 587

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T MD + R L +V ++          +  + LMG   + R  FI   A  I  + 
Sbjct: 588 TTMDPSVRVLRQVTLDD----AAAADELFSILMGDDVEARRGFITRNAKDIRFLD 638


>gi|302336536|ref|YP_003801743.1| DNA gyrase subunit B [Olsenella uli DSM 7084]
 gi|301320376|gb|ADK68863.1| DNA gyrase subunit B [Olsenella uli DSM 7084]
          Length = 667

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 254/676 (37%), Positives = 371/676 (54%), Gaps = 38/676 (5%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
                 +Y AS I++L+GLE VR RPGMYIG T +  LHHL  E++DN++DE +AG+ N 
Sbjct: 2   PSKNEHSYGASEIKVLKGLEAVRKRPGMYIGTTSKTGLHHLVWEIVDNSVDEAMAGFCNK 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+V++  +  +TVVDNGRGIP   HP    K TLE++LT LHAGGKFDN+ Y++SGGLHG
Sbjct: 62  IQVTVHADNSVTVVDNGRGIPTAMHP-VERKPTLEVVLTVLHAGGKFDNNAYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKI 215
           VGISVVNALS  L   V R   I   + SRG     + K      N  GT +TF PD +I
Sbjct: 121 VGISVVNALSKRLVAQVKRDGVINEIELSRGKVTKKMHKVGTCSPNVTGTTVTFWPDDQI 180

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     +D   L    Q  A+L+  VK   + ++E+      P  +EF + GG+  +++ 
Sbjct: 181 FET-MTYDYDTLHDHLQETAFLNKGVKIVLTDERELV-----PRVDEFCYAGGIIDFVKF 234

Query: 276 KLENRSL--ISSEIFTGKTEKK----GTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328
             E +++    S+    +         +++G VE ++ W     E+  S+ N I T+EGG
Sbjct: 235 LNEGKTVLSGCSKPIYIEGTSDPAAPESNKGEVEVSMQWNSGYSEMVMSFANDIYTEEGG 294

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
            H  G R ALT+ +  YA   +   +R  ++  DD+      ++SV + +P+F GQTK K
Sbjct: 295 MHLEGFRTALTKTVNDYARNHKLLKERDSNLTGDDIREGMTAVISVKLPDPQFEGQTKAK 354

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           L S   +      +      YL ++P +A ++ +   + ++ RL  +K R+   RK+ + 
Sbjct: 355 LGSSYMRTLTNKIVSAGLAEYLEEHPNQAREMFKKAAQAAKGRLAAQKARQATRRKSILE 414

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS   A  TELFIVEGDSAGGSAK  R R  QA+LPLRGKILNV   G  
Sbjct: 415 SAALPGKLADCSVRDASMTELFIVEGDSAGGSAKDGRRRDIQAILPLRGKILNVERVGDH 474

Query: 506 KIRNNQQIMDLVQALGCRTRS------QYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
           +  +++ I  L+ A+G            +     RY K+IIMTDADVDGAHI  LL+TFF
Sbjct: 475 RAFSSETIQSLITAIGTGVTMSNGEGGDFDIAKARYHKIIIMTDADVDGAHIRILLMTFF 534

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEH------KQKILEEF----KKHGK 609
           Y+ M  LI+   ++   PP+F +  G +  Y + +         Q+ +EE     ++  +
Sbjct: 535 YKYMRPLIDAGFVYAACPPIFGVKVGKRIHYVYPDSETDENVLLQQAIEECVPRDEEGKQ 594

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669
            K  + R+KGLGEM   QL +T MD   R L R+ I+         + ++++LMGT  + 
Sbjct: 595 RKYSVQRYKGLGEMDPQQLADTTMDPKTRILQRISIDD----AARAERAVSRLMGTSVEY 650

Query: 670 RFKFIQERASFIDDVG 685
           R  +I++ A     + 
Sbjct: 651 RRDYIEQHAKDARFLD 666


>gi|325066318|ref|ZP_08124991.1| DNA gyrase subunit B [Actinomyces oris K20]
          Length = 675

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 250/679 (36%), Positives = 372/679 (54%), Gaps = 33/679 (4%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           +  + + + +Y AS I +LEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +AGY
Sbjct: 2   SDQDATVNHDYGASDITVLEGLEAVRKRPGMYIGSTGERGLHHLVYEVVDNSVDEALAGY 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
            + IEV++  +G + V DNGRGIPV+ HP   +K T+E+++T LHAGGKF    Y +SGG
Sbjct: 62  CDHIEVTILADGGVRVSDNGRGIPVDEHP-TEHKPTVEVVMTILHAGGKFGGGGYAVSGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVGISVVNALS  +   V RQ  ++   F+ G        K +  +  GT  TF PDP
Sbjct: 121 LHGVGISVVNALSTRVDTEVRRQGFVWRMSFADGGRPITELVKGEATDSTGTTQTFYPDP 180

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP--------------- 258
            IF     FD   L +  Q  A+L+  ++   + ++   +  G                 
Sbjct: 181 TIFET-VDFDYETLRRRFQQMAFLNKGLRITLTDERLGVQDAGDEIAGDDSAPDAPEVGF 239

Query: 259 EKEEFYFPGGLKTYLQTKLENR--SLISSEIFTGKTEKK--GTHRGTVEWAIAWCEEN-P 313
             + + +  GL+ Y+    +++   L+  EI   + E+     H  ++E A+ W      
Sbjct: 240 RTDSYCYEHGLRDYVAFLNKSKKAELVHPEIIDFEAEQSLGENHSISLEIAMQWTSAYSE 299

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
            + +Y NTI T EGGTHE G R ALT  + KYA       +R  ++  DD+      ++S
Sbjct: 300 SVHTYANTINTTEGGTHEEGFRTALTTLVNKYARDKGLLKERDDNLTGDDIREGLTAVIS 359

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V + EP+F GQTKTKL + +A+  V+  +      +L  +P +A  ++    + +  RL 
Sbjct: 360 VKLSEPQFEGQTKTKLGNTEARTFVQQTVYAQLGDWLDSHPGDARAIITKASQAAAARLA 419

Query: 432 RRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            RK RE  R+   +    +PGKL DCS   A  +E+FIVEGDSAGGSA   R+  +QA++
Sbjct: 420 ARKAREATRRKGVLESASMPGKLRDCSSKNAADSEIFIVEGDSAGGSAVGGRDPEHQAIM 479

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           P+RGKILNV  A  ++  ++  I  L+ A G      +    LRY K++IM DADVDG H
Sbjct: 480 PIRGKILNVEKARLDRALSSDTIRSLITAFGTGIGEDFDIAKLRYGKIVIMADADVDGQH 539

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGK 609
           IA+LLLT  ++ M  LIE  H ++  PPL+R+     +  +A+ +  + K+L   ++ G+
Sbjct: 540 IATLLLTLLFRYMRPLIEHGHTYIAMPPLYRLKWSNAEHEFAYSDAERDKLLAAGQEKGR 599

Query: 610 GKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK 666
              +   I R+KGLGEM   +L ET MD   R L +V +++      D  ++   LMG  
Sbjct: 600 RLPKDGGIQRYKGLGEMNDHELWETTMDPTTRILKQVTLDE----AADADETFAILMGDD 655

Query: 667 ADERFKFIQERASFIDDVG 685
            ++R  FIQ  AS +  + 
Sbjct: 656 VEQRRSFIQRNASDVRFLD 674


>gi|139474074|ref|YP_001128790.1| DNA gyrase subunit B [Streptococcus pyogenes str. Manfredo]
 gi|134272321|emb|CAM30575.1| DNA gyrase subunit B [Streptococcus pyogenes str. Manfredo]
          Length = 650

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 255/652 (39%), Positives = 376/652 (57%), Gaps = 24/652 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +     YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I
Sbjct: 9   EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHI 68

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGV
Sbjct: 69  KVFIEADNSITVVDDGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS +L V V +   I  Q+F RG  ++ LE          T + F PDP+IF 
Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEIIGTTDVTG-TTVHFTPDPEIFT 186

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   FD + L K  Q  A+L+  +K   +  +   E     ++E F++ GG+ +Y++   
Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGME-----QEEHFHYEGGIGSYVEFLN 241

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           + + +I         E +G     VE A+ +       + S+ N I T EGGTHE G R 
Sbjct: 242 DKKDVIFETPIYTDGELEGI---AVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRA 298

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA+  +   +   ++  +D+      ++SV    P+F GQTKTKL + +  +
Sbjct: 299 ALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
                  + F  +L++NP  A K++E  I  S+ R+  ++ RE   +K+ +    LPGKL
Sbjct: 359 ITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS N A+  ELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I
Sbjct: 419 ADCSSNDANQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 478

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             L  A+G    + +     RY+K++IMTDADVDGAHI +LLLT  Y+ M  ++E  +++
Sbjct: 479 RSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVY 538

Query: 574 LISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           +  PP++ +  G++   Y       E+  +  LE++   G+ K  + R+KGLGEM   QL
Sbjct: 539 IAQPPIYGVKVGSEIKEYIQPGIDQEDQLKTALEKYS-IGRSKPIVQRYKGLGEMDDHQL 597

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET MD   R + RV ++       +     + LMG + + R  FI+E A +
Sbjct: 598 WETTMDPENRLMARVTVDD----AAEADKVFDMLMGDRVEPRRDFIEENAVY 645


>gi|317471524|ref|ZP_07930875.1| DNA gyrase, subunit B [Anaerostipes sp. 3_2_56FAA]
 gi|316901019|gb|EFV22982.1| DNA gyrase, subunit B [Anaerostipes sp. 3_2_56FAA]
          Length = 637

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 250/651 (38%), Positives = 356/651 (54%), Gaps = 28/651 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           +S NYDA+SI +LEGLE VR RPGMYIG    K L+HL  E++DN++DE +AG+ + I V
Sbjct: 2   SSQNYDANSISVLEGLEAVRKRPGMYIGSVSTKGLNHLIYEIVDNSVDEFLAGHCDEITV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G   + DNGRGIPV  + +    S +E++ T LHAGGKF +  Y+ISGGLHGVG 
Sbjct: 62  TLKDDGTAVIEDNGRGIPVGINEQ-TGLSAVEMVFTMLHAGGKFGDGGYKISGGLHGVGA 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGD 218
           SVVNALS  L VTV +   I+ + F RG    PL      R  + GT+I F PDP+IF  
Sbjct: 121 SVVNALSTWLKVTVKQDGNIYEECFERGKVTEPLRVIGSCRKSETGTKIRFLPDPEIFDK 180

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F AA +       AYL+  +K  +  ++   E         ++ P G+  Y++   +
Sbjct: 181 TY-FKAAMIRNRLHETAYLNPELKIHYINERSGEETE-----VLYHEPEGICAYVKKLND 234

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVA 337
            + ++   ++     K+  +    E A  +  +    I  +CN I T EGGTH +G +  
Sbjct: 235 GKHVLHDPVYY----KREINGIEAEIAFQYTEDFGENILGFCNNIYTTEGGTHITGFKSK 290

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            T  + +YA       ++  +    D+      I+SV   EP F GQTKTKL + DA + 
Sbjct: 291 FTAVMNQYARELGILKEKDTNFTGADVRNGMTAIISVKHPEPRFEGQTKTKLDNPDANKV 350

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           V     D    +  +N     K+L    + ++ R    K +          +   GKL++
Sbjct: 351 VGEITGDETVLFFDKNLDTLKKVLACAEKSAKIRKAEEKAKTNLLVRQKLSIDSNGKLSN 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C        E+FIVEGDSAGGSAK ARNR  QA+LP+RGKILNV  A  +K+  N +I  
Sbjct: 411 CESRKPEECEIFIVEGDSAGGSAKTARNRRTQAILPIRGKILNVEKATMDKVLANAEIKT 470

Query: 516 LVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++   GC       + +  E LRY+K++IMTDADVDGAHIA+LLLTFFY+ M +LI   H
Sbjct: 471 MINTFGCGFSEGYGNDFDIEKLRYQKIVIMTDADVDGAHIATLLLTFFYRFMPELITHGH 530

Query: 572 LFLISPPLFR-ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++L +PPL++ I +  K  Y  D+      LE++K   KG   + R+KGLGEM ASQL E
Sbjct: 531 VYLATPPLYKAIPKKGKETYLFDD----TALEKYKAAHKGPFTLQRYKGLGEMDASQLWE 586

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           T +D   RTL ++EI     +   T    + LMG++   R +FI + A   
Sbjct: 587 TTLDPETRTLKQIEIEDARMASDVT----SMLMGSEVPPRRQFIYDNAEDA 633


>gi|15900699|ref|NP_345303.1| DNA gyrase subunit B [Streptococcus pneumoniae TIGR4]
 gi|15902759|ref|NP_358309.1| DNA gyrase subunit B [Streptococcus pneumoniae R6]
 gi|111658143|ref|ZP_01408840.1| hypothetical protein SpneT_02000668 [Streptococcus pneumoniae
           TIGR4]
 gi|116516156|ref|YP_816203.1| DNA gyrase subunit B [Streptococcus pneumoniae D39]
 gi|149007692|ref|ZP_01831309.1| DNA gyrase subunit B [Streptococcus pneumoniae SP18-BS74]
 gi|168486180|ref|ZP_02710688.1| DNA gyrase, B subunit [Streptococcus pneumoniae CDC1087-00]
 gi|225856480|ref|YP_002737991.1| DNA gyrase subunit B [Streptococcus pneumoniae P1031]
 gi|61225463|sp|P0A4L9|GYRB_STRPN RecName: Full=DNA gyrase subunit B
 gi|61225464|sp|P0A4M0|GYRB_STRR6 RecName: Full=DNA gyrase subunit B
 gi|14972283|gb|AAK74943.1| DNA gyrase subunit B [Streptococcus pneumoniae TIGR4]
 gi|15458306|gb|AAK99519.1| DNA gyrase [Streptococcus pneumoniae R6]
 gi|73916240|gb|AAZ92988.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916246|gb|AAZ92991.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916250|gb|AAZ92993.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916256|gb|AAZ92996.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916258|gb|AAZ92997.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916270|gb|AAZ93003.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916328|gb|AAZ93032.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916336|gb|AAZ93036.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916346|gb|AAZ93041.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916348|gb|AAZ93042.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|116076732|gb|ABJ54452.1| DNA gyrase, B subunit [Streptococcus pneumoniae D39]
 gi|147760847|gb|EDK67818.1| DNA gyrase subunit B [Streptococcus pneumoniae SP18-BS74]
 gi|183570816|gb|EDT91344.1| DNA gyrase, B subunit [Streptococcus pneumoniae CDC1087-00]
 gi|225726173|gb|ACO22025.1| DNA gyrase, B subunit [Streptococcus pneumoniae P1031]
          Length = 648

 Score =  581 bits (1497), Expect = e-163,   Method: Composition-based stats.
 Identities = 251/648 (38%), Positives = 374/648 (57%), Gaps = 22/648 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I+V 
Sbjct: 10  AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVF 69

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGVG S
Sbjct: 70  IEPDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 128

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L V V +   I  Q++ RG  ++ LE      +K GT + F PDPKIF +  
Sbjct: 129 VVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEIVGDT-DKTGTTVHFTPDPKIFTETT 187

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD  +L K  Q  A+L+  ++   +  ++  E     + + +++ GG+ +Y++   EN+
Sbjct: 188 IFDFDKLNKRIQELAFLNRGLQISITDKRQGLE-----QTKHYHYEGGIASYVEYINENK 242

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
            +I         E       TVE A+ +     E   S+ N I T EGGTHE G R ALT
Sbjct: 243 DVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALT 299

Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA   +  +    ++  +D+      ++SV    P+F GQTKTKL + +  +   
Sbjct: 300 RVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 359

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
               + F  +L++NP  A +++E  ++        +R +    +K+ +    LPGKLADC
Sbjct: 360 RLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADC 419

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I  L
Sbjct: 420 SSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 479

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    +++     RY+K+++MTDADVDGAHI +LLLT  Y+ M  ++E  ++++  
Sbjct: 480 FTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQ 539

Query: 577 PPLFRITQGTKSV-YAHDEEHKQKILEEFKK---HGKGKIEISRFKGLGEMLASQLKETA 632
           PP++ +  G++   Y      ++  L+E       G+ K  I R+KGLGEM   QL ET 
Sbjct: 540 PPIYGVKVGSEIKEYIQPGADQEIKLQEALARYSEGRTKPTIQRYKGLGEMDDHQLWETT 599

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           MD   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 600 MDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643


>gi|225870671|ref|YP_002746618.1| topoisomerase IV subunit B [Streptococcus equi subsp. equi 4047]
 gi|225700075|emb|CAW94141.1| topoisomerase IV subunit B [Streptococcus equi subsp. equi 4047]
          Length = 649

 Score =  581 bits (1497), Expect = e-163,   Method: Composition-based stats.
 Identities = 240/652 (36%), Positives = 364/652 (55%), Gaps = 34/652 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY+  +I++LEGLE VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ N I+V+L+
Sbjct: 10  NYNDDAIQVLEGLEAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGNEIDVTLN 69

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G  T+ D+GRG+P   H       T+++I T LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 70  KDGSATISDSGRGMPTGQH--ALGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 127

Query: 163 NALSDELHVTVARQNTIFSQKFSRGI--PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           NALS  L V + R   ++ Q+F  G        +     ++K GTR+TF PD KIF    
Sbjct: 128 NALSSWLEVEITRDGAVYKQRFENGGRPVTGLEKIATAPKSKSGTRVTFMPDDKIFSTT- 186

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    + +  +  A+L   VK   +  +        P  EEF++  G++ ++    E++
Sbjct: 187 EFKWNTIAERLKESAFLLKTVKMTLTDLRGDD-----PVVEEFHYENGVQDFVAYLNEDK 241

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             ++  I+    E+       VE A+ + +   +   S+ N + T +GG+HE+GL+ A+T
Sbjct: 242 ETLTPVIYMEGQEQD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAIT 297

Query: 340 RGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395
           + +  YA  T    ++  ++   D       +LS+ + E   +F GQTK KL S  A+  
Sbjct: 298 KAMNDYARKTSLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPI 357

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGK 452
           VE+ + +    +L++N   A  L+   I+  + R   R+ R+ +R     K       GK
Sbjct: 358 VESIVSEKLTFFLLENGELAGHLIRKAIKARDAREAARRARDESRNGKKNKKDKGLLSGK 417

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N++
Sbjct: 418 LTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  +V  +G    + +  +D+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H+
Sbjct: 478 INTMVYTIGAGVGADFNLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHV 537

Query: 573 FLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           ++  PPL+++++G     K  YA  +   + + +EF K       + R+KGLGEM A QL
Sbjct: 538 YIALPPLYKMSKGKGKSEKVSYAWTDGELEDLRKEFGKGA----SLQRYKGLGEMNADQL 593

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET MD + RTL+RV I+     L   +  ++ LMG KA  R ++I++  +F
Sbjct: 594 WETTMDPDTRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVTF 641


>gi|148985841|ref|ZP_01818935.1| DNA gyrase, B subunit [Streptococcus pneumoniae SP3-BS71]
 gi|73916286|gb|AAZ93011.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916318|gb|AAZ93027.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916322|gb|AAZ93029.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916344|gb|AAZ93040.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|147921987|gb|EDK73111.1| DNA gyrase, B subunit [Streptococcus pneumoniae SP3-BS71]
 gi|301799821|emb|CBW32390.1| DNA gyrase subunit B [Streptococcus pneumoniae OXC141]
          Length = 648

 Score =  581 bits (1497), Expect = e-163,   Method: Composition-based stats.
 Identities = 251/648 (38%), Positives = 374/648 (57%), Gaps = 22/648 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I+V 
Sbjct: 10  AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVF 69

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGVG S
Sbjct: 70  IEPDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 128

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L V V +   I  Q++ RG  ++ LE      +K GT + F PDPKIF +  
Sbjct: 129 VVNALSTQLDVHVHKNGKIHYQEYRRGHVVAELEIVGDT-DKTGTTVHFTPDPKIFTETT 187

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD  +L K  Q  A+L+  ++   +  ++  E     + + +++ GG+ +Y++   EN+
Sbjct: 188 IFDFDKLNKRIQELAFLNRGLQISITDKRQGLE-----QTKHYHYEGGIASYVEYINENK 242

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
            +I         E       TVE A+ +     E   S+ N I T EGGTHE G R ALT
Sbjct: 243 DVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALT 299

Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA   +  +    ++  +D+      ++SV    P+F GQTKTKL + +  +   
Sbjct: 300 RVINDYARKNKLLKDNEDNLTGEDVREGLAAVISVKHPNPQFEGQTKTKLGNSEVVKITN 359

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
               + F  +L++NP  A +++E  ++        +R +    +K+ +    LPGKLADC
Sbjct: 360 RLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADC 419

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I  L
Sbjct: 420 SSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 479

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    +++     RY+K+++MTDADVDGAHI +LLLT  Y+ M  ++E  ++++  
Sbjct: 480 FTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQ 539

Query: 577 PPLFRITQGTKSV-YAHDEEHKQKILEEFKK---HGKGKIEISRFKGLGEMLASQLKETA 632
           PP++ +  G++   Y      ++  L+E       G+ K  I R+KGLGEM   QL ET 
Sbjct: 540 PPIYGVKVGSEIKEYIQPGADQEIKLQEALARYSEGRTKPTIQRYKGLGEMDDHQLWETT 599

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           MD   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 600 MDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643


>gi|299822648|ref|ZP_07054534.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Listeria grayi DSM
           20601]
 gi|299816177|gb|EFI83415.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Listeria grayi DSM
           20601]
          Length = 657

 Score =  581 bits (1497), Expect = e-163,   Method: Composition-based stats.
 Identities = 246/653 (37%), Positives = 363/653 (55%), Gaps = 37/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + Y+  SI++LEGL+ VR RP MYIG TD + LHHL  E++DN++DE +AG+   I V +
Sbjct: 6   NEYNDDSIQVLEGLDAVRKRPAMYIGSTDVRGLHHLVYEIVDNSVDEALAGFGERITVKI 65

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGVGIS 160
             +  +++ D GRG+PV  H     KST+E+ILT LHAGGKF     Y+ SGGLHGVG S
Sbjct: 66  YKDQSISIEDEGRGMPVGTHK--TGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGVGSS 123

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           VVNALS+ L VTV R   I+ Q F+ G  P+  L+K  K +  RGT+I F+PDP IF   
Sbjct: 124 VVNALSEWLKVTVYRDGAIYEQNFADGGKPVDKLKKIGKTKR-RGTKIHFKPDPAIFP-M 181

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L +  +  A+L   +    S ++  AE       E F F  G+K +++   E 
Sbjct: 182 TSFNYDTLSERLRESAFLLKGMAIELSDERTGAE-------EIFQFEEGVKNFVEYINEG 234

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           + ++   +         +    +E A  + +     I S+ N + T   GTHESG++ A+
Sbjct: 235 KDVLHPVVDI----DGESGSIEMELAFQFNDGYSENILSFVNNVRTRGAGTHESGMKAAM 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394
           TR    YA       ++  ++   D+      +LS+ + E   +F GQTK KL + +A+ 
Sbjct: 291 TRVFNDYARRVGMLKEKDKNLEGSDIREGLSAVLSIRVPENLLQFEGQTKEKLGTAEARA 350

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPG 451
            V+  + +   ++L +NP  ++ L++  I+  E R   RK RE  R    RK     L G
Sbjct: 351 AVDAVVTEHLAYFLAENPDTSSLLVKKAIKAREAREAARKAREETRNGKKRKRSETILSG 410

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL        +  EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A    I  N+
Sbjct: 411 KLTPAQSRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLPDILKNE 470

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    +++  ED  Y+K++IMTDAD DGAHI  LLLTFFY+ M  LIE   
Sbjct: 471 EISTIIHTVGAGVGAEFNLEDCNYDKIVIMTDADTDGAHIQVLLLTFFYRYMTPLIEAGK 530

Query: 572 LFLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +F+  PPL+++++G   K V  YA  ++  +  + +  K       I R+KGLGEM A Q
Sbjct: 531 IFIALPPLYKVSKGAGKKEVLEYAWTDDELEGAISKIGK----GYMIQRYKGLGEMNADQ 586

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET MD   RTL+RV I+     +   +  +  LMG K + R K+I++   F
Sbjct: 587 LWETTMDPETRTLIRVRIDD----IARAERRVATLMGDKVEPRRKWIEKHVEF 635


>gi|269115151|ref|YP_003302914.1| DNA gyrase subunit B [Mycoplasma hominis]
 gi|290457646|sp|P43053|GYRB_MYCHP RecName: Full=DNA gyrase subunit B
 gi|268322776|emb|CAX37511.1| DNA gyrase subunit B [Mycoplasma hominis ATCC 23114]
          Length = 648

 Score =  581 bits (1497), Expect = e-163,   Method: Composition-based stats.
 Identities = 268/653 (41%), Positives = 363/653 (55%), Gaps = 26/653 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y+A +I+ILEGLE VR RPGMYIG    K LHHL  E++DN++DE +AG+A  I++ L  
Sbjct: 10  YNADNIQILEGLEAVRKRPGMYIGSIGFKGLHHLLWEIVDNSVDEAMAGFATEIKIKLYP 69

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           N  + V DNGRG+P   H     KS +E ILT LHAGGKFD S Y++SGGLHGVG SVVN
Sbjct: 70  NNVIEVEDNGRGMPTGIHS-GTKKSAVETILTVLHAGGKFDGSNYKVSGGLHGVGASVVN 128

Query: 164 ALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKAG 221
           ALS E  V V R   +  Q+F  G IP+ PLE    V   + GT I F PD  I   +  
Sbjct: 129 ALSSEFEVWVKRDGKLHYQQFRNGGIPVKPLEVIGNVSEVETGTTIKFHPDYTIMEKEN- 187

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   ++  ++  AYL+  +K      ++   K        F F GGL  Y++   + + 
Sbjct: 188 FDFDTIIDHSKQIAYLNKGLKITVENVEKNIIKV-------FCFEGGLIDYVKELNKGKK 240

Query: 282 LISSEIFTGKTEKKGT-----HRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLR 335
           LI  E+   +               VE A+ + E     I SY N I T +GGTHE G  
Sbjct: 241 LIVPEVIYAEGVFNDKNFTNGQDVIVEVAMQYNEAYTNSIVSYANNIQTIDGGTHEQGFY 300

Query: 336 VALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            AL R    YAE  +  +     I  +D+    V I+S+   +P F GQTK KL + DA+
Sbjct: 301 DALVRIYNNYAETNKLFKTSSEKITREDVKEGLVAIISIKHTDPIFEGQTKGKLENKDAR 360

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK-TAIRKLRLPGK 452
                 L D  + YL +NP  A  ++E  +     RL   K RE +RK   +    LPGK
Sbjct: 361 IATNKILSDSLERYLNENPEIARAIIEKCLLSQHTRLLEIKAREASRKGNGLDLGNLPGK 420

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS   A   ELFIVEG+SAGGSAK  R+RS QA+LPLRGK++N        + +N++
Sbjct: 421 LADCSSKNAEIRELFIVEGNSAGGSAKMGRDRSIQAILPLRGKVINAEKNSFASVLSNKE 480

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++ ALG    +++    L+Y K+IIMTDADVDGAHI +LLLTFFY+ M  LIE   +
Sbjct: 481 IATMIHALGTGINTEFDINKLKYHKIIIMTDADVDGAHITTLLLTFFYRYMKPLIEYGFV 540

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           +L  PPL++IT G    YA+++  K++I+ +     K  + I R+KGLGEM   QL ET 
Sbjct: 541 YLAQPPLYKITSGKNVEYAYNDLQKEQIMAKL--EDKRNVAIQRYKGLGEMDPEQLWETT 598

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           MD   R +L+V+I+               LMG + + R  FIQE A + +++ 
Sbjct: 599 MDPETRKMLQVQIDDAAIC----DTVFATLMGEEIEPRHDFIQENAKYANNID 647


>gi|225868402|ref|YP_002744350.1| topoisomerase IV subunit B [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701678|emb|CAW99000.1| topoisomerase IV subunit B [Streptococcus equi subsp.
           zooepidemicus]
          Length = 649

 Score =  581 bits (1497), Expect = e-163,   Method: Composition-based stats.
 Identities = 242/652 (37%), Positives = 365/652 (55%), Gaps = 34/652 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY+  +I++LEGLE VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ N I+V+L+
Sbjct: 10  NYNDDAIQVLEGLEAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGNEIDVTLN 69

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G  T+ D+GRG+P   H       T+++I T LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 70  KDGSATISDSGRGMPTGQH--ALGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 127

Query: 163 NALSDELHVTVARQNTIFSQKFSRGI--PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           NALS  L V + R   ++ Q+F  G        +     ++K GTR+TF PD KIF    
Sbjct: 128 NALSSWLEVEITRDGAVYKQRFENGGRPVTGLEKIATAPKSKSGTRVTFMPDDKIFSTT- 186

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    + +  +  A+L   VK   +  +        P  EEF++  G++ ++    E++
Sbjct: 187 EFKWNTIAERLKESAFLLKTVKMTLTDLRGDD-----PVVEEFHYENGVQDFVAYLNEDK 241

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             ++  I+    E+       VE A+ + +   +   S+ N + T +GG+HE+GL+ A+T
Sbjct: 242 ETLTPVIYMEGQEQD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAIT 297

Query: 340 RGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395
           + +  YA  T    ++  ++   D       +LS+ + E   +F GQTK KL S  A+  
Sbjct: 298 KAMNDYARKTSLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPI 357

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGK 452
           VE+ + +    +L++N   A  L+   I+  + R   R+ R+ +R     K       GK
Sbjct: 358 VESIVSEKLTFFLLENGELAGHLIRKAIKARDAREAARRARDESRNGKKNKKDKGILSGK 417

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N++
Sbjct: 418 LTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  +V  +G    + +  ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H+
Sbjct: 478 INTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHV 537

Query: 573 FLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           ++  PPL+++++G     K  YA  +   + + +EF K       + R+KGLGEM ASQL
Sbjct: 538 YIALPPLYKMSKGKGKSEKVSYAWTDGELEDLRKEFGKGA----TLQRYKGLGEMNASQL 593

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET MD + RTL+RV I+     L   +  ++ LMG KA  R ++I++  +F
Sbjct: 594 WETTMDPDTRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVTF 641


>gi|169836509|ref|ZP_02869697.1| DNA gyrase subunit B [candidate division TM7 single-cell isolate
           TM7a]
          Length = 660

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 262/674 (38%), Positives = 384/674 (56%), Gaps = 38/674 (5%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            +NQ  S +YD S I++LEGLEPVR RPGMYIG T    +HHL  E+ DN++DE IAG+A
Sbjct: 1   MSNQINSGSYDGSQIQVLEGLEPVRKRPGMYIGSTGYDGVHHLIKEIADNSIDEAIAGFA 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             ++V +  +G +TV D+GRGIPV+ HPK    S LE +LT LHAGGKF    Y++S GL
Sbjct: 61  TRVDVKILKDGGITVTDDGRGIPVDKHPK-TGLSALETVLTVLHAGGKFGGGGYKVSSGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS ++   V R   ++  +F RG  + PL+K  K     GT ITF PDP 
Sbjct: 120 HGVGSSVVNALSTKMIAEVVRDGQLYRVEFERGKIVQPLKKIGKTNRVTGTSITFYPDPT 179

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   FD   ++   + ++YL+  V T    ++         E++ FYF GG+++Y++
Sbjct: 180 IFKETVDFDYKWVVNYLRHQSYLTKGVFTSVQDER-------TQERQAFYFEGGIRSYVK 232

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESG 333
                + +IS  IF  +   +      VE A+ + +   E+   + N +LT +GGTH  G
Sbjct: 233 NLNIGKDVISENIFYVE---RPVEDCMVEIALQYNDTYTEMVKPFANNVLTPDGGTHLVG 289

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            + ALTR I  YA       ++  ++  DD+      ++ V + +P+F GQTK KL + +
Sbjct: 290 FKAALTRVINDYARKNNLLKEKEDNLTGDDIREGLTAVILVKLPDPQFEGQTKNKLGNPE 349

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRKTAIRKLRLP 450
            +R V+  + + F +YL +NP  A K++   ++     R  R  +  + RK A+  L LP
Sbjct: 350 MRRYVDQVMSEYFSYYLEENPSIAKKVVNKALLAARARRAARAARDNIIRKGALDGLNLP 409

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS   A   EL+IVEGDSAGGSAK  R+   QA+LPLRGK+LN   A  +++  N
Sbjct: 410 GKLADCSSKDAKECELYIVEGDSAGGSAKSGRDSRTQAILPLRGKVLNTERARLDRMLAN 469

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
            +I+ L++ +G      +    LRY ++IIMTDADVDG+HIA+LL+TFF++ M +++E  
Sbjct: 470 NEIVSLIKGMGVGIGDTFDISGLRYHRIIIMTDADVDGSHIATLLMTFFFRHMKEVVEGG 529

Query: 571 HLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEF---KKHGKGKIE------------- 613
           H++L  PPL+ +   G K  YA+ +E K  ++ E    ++    KI              
Sbjct: 530 HIYLAKPPLYLLKAAGNKKWYAYSDEEKDNMISELIEKRRSNGAKINPDDSPMKQAGLND 589

Query: 614 ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKF 673
           I R+KGLGEM A QL ET M    R L++V++       +      +KLMG +   R  F
Sbjct: 590 IQRYKGLGEMDADQLWETTMKPENRVLIQVKVED----AERADAIFSKLMGDEVSLRKSF 645

Query: 674 IQERASFI--DDVG 685
           IQ RA     D++ 
Sbjct: 646 IQTRAKDANFDELD 659


>gi|319892372|ref|YP_004149247.1| Topoisomerase IV subunit B [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162068|gb|ADV05611.1| Topoisomerase IV subunit B [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 665

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 235/650 (36%), Positives = 353/650 (54%), Gaps = 29/650 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY   +I++LEGLE VR RPGMYIG TD++ LHHL  EV+DN++DE++ GY N I V++
Sbjct: 7   NNYSDDAIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEVVDNSVDEILNGYGNEINVTI 66

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +  +TV DNGRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 67  NEDESITVADNGRGMPTGTH--RSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASV 124

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+ L V + R   IF Q+F+ G        K+    K GT +TF+PD +IF     
Sbjct: 125 VNALSESLSVEIHRDGEIFEQQFAHGGVPQTKLIKKGKTKKTGTTVTFKPDAEIFKSATS 184

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F+   L +  Q  A+L   +K      +   E+      E +++  G+K ++    E + 
Sbjct: 185 FNFETLSERLQESAFLLQNLKITLEDRRVGKERS-----EVYHYEEGIKAFVSYVNEGKE 239

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
           ++        T  +     + ++   +   +  I S+ N + T +GGTHE G + A+TR 
Sbjct: 240 VLHDVALFQGTANEIEVDVSFQYNDQY---SESIMSFVNNVRTKDGGTHEVGFKTAMTRV 296

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397
             +YA        +  ++  +D+      I+SV I E   +F GQTK+KL + +A+  V+
Sbjct: 297 FNEYARRIGDLKAKDKNLEGNDIREGLTAIISVRIPEHLLQFEGQTKSKLGTPEARSAVD 356

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLA 454
             + +    YL +    +  L++  I+  + R   RK RE  R     K     L GKL 
Sbjct: 357 AIVAEKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLT 416

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
                     EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  E I  N++I 
Sbjct: 417 PAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEIN 476

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++  +G    + +  +D  Y ++IIMTDAD DGAHI  LLLTFF++ M  L+    +++
Sbjct: 477 TIIHTIGAGVGNDFNLKDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMRPLVMAGRVYI 536

Query: 575 ISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
             PPL+++ +G     K  YA  +E  +K+  E  K       + R+KGLGEM   QL E
Sbjct: 537 ALPPLYKLEKGKGKNKKIAYAWTDEELEKLQREMGK----GFVLQRYKGLGEMNPDQLWE 592

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           T M+   RTL+RV+I+ ++ S +     ++ LMG K   R ++I+    F
Sbjct: 593 TTMNPETRTLIRVQIDDEVRSSQR----VSTLMGDKVAPRREWIERHVQF 638


>gi|71894694|ref|YP_278802.1| DNA gyrase subunit B [Mycoplasma synoviae 53]
 gi|71851482|gb|AAZ44091.1| DNA gyrase subunit B [Mycoplasma synoviae 53]
          Length = 650

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 260/661 (39%), Positives = 375/661 (56%), Gaps = 26/661 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
                 +  Y+A SI +LEGLE VRMRPGMYIG  D+  LHHL  E++DN++DEV+AGYA
Sbjct: 4   KNKVQNNAEYNADSIEVLEGLEAVRMRPGMYIGSKDKTGLHHLIWEIVDNSVDEVLAGYA 63

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I++++  +G ++V DNGRGIPV+ H K   KS LEI+ T LHAGGKF +  Y++SGGL
Sbjct: 64  DNIKITITKDGGVSVEDNGRGIPVDMHSK--GKSALEIVFTGLHAGGKFKSDAYKVSGGL 121

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPD 212
           HGVG SVVN LS  L V V R   ++  +F  G  L    K  +    NK GT++ F PD
Sbjct: 122 HGVGASVVNGLSSYLGVWVKRNGNVYFAEFKDGGKLEAPIKVIETTGDNKTGTKVLFYPD 181

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
             I      FD   ++   +  AYL+  ++   S +++ +         EF +P G+  +
Sbjct: 182 FTIMDKN-EFDKNLIVDRIRQTAYLNKNLRISLSDERDNS-------FVEFCYPNGILDF 233

Query: 273 LQTKLENRS--LISSEIFTGKTEKKGTHRGTVEWAIAWCEE----NPEITSYCNTILTDE 326
           L    ++++       I+T    +  T    VE A+ +       N    +Y N I   E
Sbjct: 234 LTVITKSKNTLQNDELIYTEGIYQDKTGDVKVEIAMRYMASAAKSNAVAYAYTNNIYNKE 293

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G    LTR    YA+  +  +        +DL  +   I+S+    PEF GQTK
Sbjct: 294 GGTHLNGFFNGLTRIWNNYAQDKKFFKTQGEKFSREDLENNLFLIISIKHNNPEFEGQTK 353

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI 444
            KL S +A   V     + F+  L QNP  A ++++++++    RL+  K++E+ +K  +
Sbjct: 354 HKLNSRNASPAVNKVFSEVFEKTLDQNPKFAEEVIKYLLDFKARRLKDEKEKELQKKKGL 413

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKL+DCS   A  +EL+IVEG+SAGGSAK  R+R  QA+LPL+GKILNV     
Sbjct: 414 GNSSLPGKLSDCSSKNAEESELYIVEGNSAGGSAKMGRDRHFQAILPLKGKILNVEKKDI 473

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           EKI  N +I+ L+ ALG      +    +RY+KVIIMTDAD DG+HI  LL+TFF++   
Sbjct: 474 EKILKNDEILSLIAALGAGVGQDFNVNKVRYQKVIIMTDADSDGSHIRVLLITFFFKLFR 533

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
            LIE   L++  PPL++I    K  YA++E  K++IL+   K    KI I R+KGLGEM 
Sbjct: 534 QLIEYGMLYIAQPPLYKIESNKKVYYAYNEAQKEEILDSLDKS--KKIMIQRYKGLGEMN 591

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           A QL ET MD   R +L+V+++      +   + +N LMG + + R +FI E A  + D+
Sbjct: 592 ADQLWETTMDPKTRKMLQVQVSD----AEKAMEVLNILMGEETEPRKEFIFENAKKVRDI 647

Query: 685 G 685
            
Sbjct: 648 D 648


>gi|167746702|ref|ZP_02418829.1| hypothetical protein ANACAC_01413 [Anaerostipes caccae DSM 14662]
 gi|167653662|gb|EDR97791.1| hypothetical protein ANACAC_01413 [Anaerostipes caccae DSM 14662]
          Length = 637

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 248/651 (38%), Positives = 355/651 (54%), Gaps = 28/651 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           +S NYDA+SI +LEGLE VR RPGMYIG    K L+HL  E++DN++DE +AG+ + I V
Sbjct: 2   SSQNYDANSISVLEGLEAVRKRPGMYIGSVSTKGLNHLIYEIVDNSVDEFLAGHCDEITV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G   + DNGRGIPV  + +    S +E++ T LHAGGKF +  Y+ISGGLHGVG 
Sbjct: 62  TLKDDGTAVIEDNGRGIPVGINEQ-TGLSAVEMVFTMLHAGGKFGDGGYKISGGLHGVGA 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGD 218
           SVVNALS  L VTV +   I+ + F RG    PL      R  + GT++ F PDP+IF  
Sbjct: 121 SVVNALSTWLKVTVKQDGNIYEECFERGKVTEPLRVTGSCRKSETGTKVRFLPDPEIFDK 180

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F AA +        YL+  +K  +  ++   E         ++ P G+  Y++   +
Sbjct: 181 TY-FKAAMIRNRLHETTYLNPELKIHYINERSGEETE-----VLYHEPEGICAYVKKLND 234

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVA 337
            + ++   ++     K+  +    E A  +  +    I  +CN I T EGGTH +G +  
Sbjct: 235 GKHVLHDPVYY----KRDINGIEAEIAFQYTEDFGENILGFCNNIYTTEGGTHITGFKSK 290

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            T  + +YA       ++  +    D+      I+SV   EP F GQTKTKL + DA + 
Sbjct: 291 FTAVMNQYARELGILKEKDTNFTGADVRNGMTAIISVKHPEPRFEGQTKTKLDNPDANKV 350

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           V     D    +  +N     K+L    + ++ R    K +          +   GKL++
Sbjct: 351 VSEITGDETVLFFDKNLDTLKKVLACAEKSAKIRKAEEKAKTNLLVRQKLSIDSNGKLSN 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C        E+FIVEGDSAGGSAK ARNR  QA+LP+RGKILNV  A  +K+  N +I  
Sbjct: 411 CESRKPEECEIFIVEGDSAGGSAKTARNRRTQAILPIRGKILNVEKATMDKVLANAEIKT 470

Query: 516 LVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++   GC       + +  E LRY+K++IMTDADVDGAHIA+LLLTFFY+ M +LI   H
Sbjct: 471 MINTFGCGFSEGYGNDFDIEKLRYQKIVIMTDADVDGAHIATLLLTFFYRFMPELITHGH 530

Query: 572 LFLISPPLFR-ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++L +PPL++ I +  K  Y  D+      LE++K   KG   + R+KGLGEM ASQL E
Sbjct: 531 VYLATPPLYKAIPKKGKETYLFDD----TALEKYKAAHKGPFTLQRYKGLGEMDASQLWE 586

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           T +D   RTL ++EI     +   T    + LMG++   R +FI + A   
Sbjct: 587 TTLDPETRTLKQIEIEDARMASDVT----SMLMGSEVPPRRQFIYDNAEDA 633


>gi|326772839|ref|ZP_08232123.1| DNA gyrase, B subunit [Actinomyces viscosus C505]
 gi|326637471|gb|EGE38373.1| DNA gyrase, B subunit [Actinomyces viscosus C505]
          Length = 675

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 251/679 (36%), Positives = 372/679 (54%), Gaps = 33/679 (4%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           +  + + + +Y AS I +LEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +AGY
Sbjct: 2   SDQDATVNHDYGASDITVLEGLEAVRKRPGMYIGSTGERGLHHLVYEVVDNSVDEALAGY 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
            + IEV++  +G + V DNGRGIPV+ HP   +K T+E+++T LHAGGKF    Y +SGG
Sbjct: 62  CDHIEVTILADGGVRVSDNGRGIPVDEHP-TEHKPTVEVVMTILHAGGKFGGGGYAVSGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVGISVVNALS  +   V RQ  ++   F+ G        K +  +  GT  TF PDP
Sbjct: 121 LHGVGISVVNALSTRVDTEVRRQGFVWRMSFADGGRPITELVKGEATDSTGTTQTFYPDP 180

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP--------------- 258
            IF     FD   L +  Q  A+L+  ++   + ++   +  G                 
Sbjct: 181 TIFET-VDFDYEMLRRRFQQMAFLNKGLRITLTDERLGVQDAGDEIAGDDSAPDAPEVGF 239

Query: 259 EKEEFYFPGGLKTYLQTKLENR--SLISSEIFTGKTEKK--GTHRGTVEWAIAWCEEN-P 313
             + + +  GL+ Y+    +++   LI  EI   + E+     H  ++E A+ W      
Sbjct: 240 RTDSYCYEHGLRDYVAFLNKSKKAELIHPEIIDFEAEQSLGENHSISLEIAMQWTSAYSE 299

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
            + +Y NTI T EGGTHE G R ALT  + KYA       +R  ++  DD+      ++S
Sbjct: 300 SVHTYANTINTTEGGTHEEGFRTALTTLVNKYARDKGLLKERDDNLTGDDIREGLTAVIS 359

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V + EP+F GQTKTKL + +A+  V+  +      +L  +P +A  ++    + +  RL 
Sbjct: 360 VKLSEPQFEGQTKTKLGNTEARTFVQQTVYAQLGDWLDSHPGDARAIITKASQAAAARLA 419

Query: 432 RRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            RK RE  R+   +    +PGKL DCS   A  +E+FIVEGDSAGGSA   R+  +QA++
Sbjct: 420 ARKAREATRRKGVLESASMPGKLRDCSSKNAADSEIFIVEGDSAGGSAVGGRDPEHQAIM 479

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           P+RGKILNV  A  ++  ++  I  L+ A G      +    LRY K++IM DADVDG H
Sbjct: 480 PIRGKILNVEKARLDRALSSDTIRSLITAFGTGIGEDFDIAKLRYGKIVIMADADVDGQH 539

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGK 609
           IA+LLLT  ++ M  LIE  H ++  PPL+R+     +  +A+ +  + K+L   ++ G+
Sbjct: 540 IATLLLTLLFRYMRPLIEHGHTYIAMPPLYRLKWSNAEHEFAYSDAERDKLLAAGQEKGR 599

Query: 610 GKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK 666
              +   I R+KGLGEM   +L ET MD   R L +V +++      D  ++   LMG  
Sbjct: 600 RLPKDGGIQRYKGLGEMNDHELWETTMDPTTRILKQVTLDE----AADADETFAILMGDD 655

Query: 667 ADERFKFIQERASFIDDVG 685
            ++R  FIQ  AS +  + 
Sbjct: 656 VEQRRSFIQRNASDVRFLD 674


>gi|73916252|gb|AAZ92994.1| DNA gyrase subunit B [Streptococcus pneumoniae]
          Length = 648

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 251/649 (38%), Positives = 375/649 (57%), Gaps = 24/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I+V 
Sbjct: 10  AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVF 69

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGVG S
Sbjct: 70  IEPDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 128

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L V V +   I  Q++ RG  ++ LE      +K GT + F PDPKIF +  
Sbjct: 129 VVNALSTQLDVHVHKNGKIHYQEYRRGHVIADLEIVGDT-DKTGTTVHFTPDPKIFTETT 187

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD  +L K  Q  A+L+  ++   +  ++  E     + + +++ GG+ +Y++   EN+
Sbjct: 188 IFDFDKLNKRIQELAFLNRGLQISITDKRQGLE-----QTKHYHYEGGIASYVEYINENK 242

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
            +I         E       TVE A+ +     E   S+ N I T EGGTHE G R ALT
Sbjct: 243 DVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALT 299

Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA   +  +    ++  +D+      ++SV    P+F GQTKTKL + +  +   
Sbjct: 300 RVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 359

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
               + F  +L++NP  A +++E  ++        +R +    +K+ +    LPGKLADC
Sbjct: 360 RLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADC 419

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I  L
Sbjct: 420 SSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 479

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    +++     RY+K+++MTDADVDGAHI +LLLT  Y+ M  ++E  ++++  
Sbjct: 480 FTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQ 539

Query: 577 PPLFRITQGTKSV-YAHD--EEH--KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           PP++ +  G++   Y     ++    Q+ L  +   G+ K  I R+KGLGEM   QL ET
Sbjct: 540 PPIYGVKVGSEIKEYIQPGGDQEIKLQEALARYS-EGRTKPTIQRYKGLGEMDDHQLWET 598

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            MD   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 599 TMDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643


>gi|149010561|ref|ZP_01831932.1| DNA gyrase, B subunit [Streptococcus pneumoniae SP19-BS75]
 gi|147765042|gb|EDK71971.1| DNA gyrase, B subunit [Streptococcus pneumoniae SP19-BS75]
 gi|332077223|gb|EGI87685.1| DNA gyrase, B subunit [Streptococcus pneumoniae GA17545]
          Length = 648

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 249/648 (38%), Positives = 374/648 (57%), Gaps = 22/648 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+++ I+V 
Sbjct: 10  AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFSSHIQVF 69

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGVG S
Sbjct: 70  IEPDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 128

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L V V +   I  Q++ RG  ++ LE      ++ GT + F PDPKIF +  
Sbjct: 129 VVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFIPDPKIFTETT 187

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD  +L K  Q  A+L+  ++   +  ++  E     + + +++ GG+ +Y++   EN+
Sbjct: 188 TFDFDKLNKRIQELAFLNRGLQISITDKRQGLE-----QTKHYHYEGGIASYVEYINENK 242

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
            +I         E       TVE A+ +     E   S+ N I T EGGTHE G R ALT
Sbjct: 243 DVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALT 299

Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA   +  +    ++  +D+      ++SV    P+F GQTKTKL + +  +   
Sbjct: 300 RVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 359

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
               + F  +L++NP  A +++E  ++        +R +    +K+ +    LPGKLADC
Sbjct: 360 RLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADC 419

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I  L
Sbjct: 420 SSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 479

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    +++     RY+K+++MTDADVDGAHI +LLLT  Y+ M  ++E  ++++  
Sbjct: 480 FTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQ 539

Query: 577 PPLFRITQGTKSV-YAHDEEHKQKILEEFKK---HGKGKIEISRFKGLGEMLASQLKETA 632
           PP++ +  G++   Y      ++  L+E       G+ K  I R+KGLGEM   QL ET 
Sbjct: 540 PPIYGVKVGSEIKEYIQPGADQEIKLQEALARYSEGRTKPTIQRYKGLGEMDDHQLWETT 599

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           MD   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 600 MDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643


>gi|323464525|gb|ADX76678.1| DNA topoisomerase IV, B subunit [Staphylococcus pseudintermedius
           ED99]
          Length = 665

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 235/650 (36%), Positives = 353/650 (54%), Gaps = 29/650 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY   +I++LEGLE VR RPGMYIG TD++ LHHL  EV+DN++DE++ GY N I V++
Sbjct: 7   NNYSDDAIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEVVDNSVDEILNGYGNEINVTI 66

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +  +TV DNGRG+P   H     K T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 67  NEDESITVADNGRGMPTGTH--RSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASV 124

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+ L V + R   IF Q+F+ G        K+    K GT +TF+PD +IF     
Sbjct: 125 VNALSESLSVEIHRDGEIFEQQFAHGGVPQTKLIKKGKTKKTGTTVTFKPDAEIFKSATS 184

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F+   L +  Q  A+L   +K      +   E+      E +++  G+K ++    E + 
Sbjct: 185 FNFETLSERLQESAFLLQNLKITLEDCRVGKERS-----EVYHYEEGIKAFVSYVNEGKE 239

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
           ++        T  +     + ++   +   +  I S+ N + T +GGTHE G + A+TR 
Sbjct: 240 VLHDVALFQGTANEIEVDVSFQYNDQY---SESIMSFVNNVRTKDGGTHEVGFKTAMTRV 296

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397
             +YA        +  ++  +D+      I+SV I E   +F GQTK+KL + +A+  V+
Sbjct: 297 FNEYARRIGDLKAKDKNLEGNDIREGLTAIISVRIPEHLLQFEGQTKSKLGTPEARSAVD 356

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLA 454
             + +    YL +    +  L++  I+  + R   RK RE  R     K     L GKL 
Sbjct: 357 AIVAEKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLT 416

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
                     EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  E I  N++I 
Sbjct: 417 PAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEIN 476

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++  +G    + +  +D  Y ++IIMTDAD DGAHI  LLLTFF++ M  L+    +++
Sbjct: 477 TIIHTIGAGVGNDFNLKDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMRPLVMAGRVYI 536

Query: 575 ISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
             PPL+++ +G     K  YA  +E  +K+  E  K       + R+KGLGEM   QL E
Sbjct: 537 ALPPLYKLEKGKGKNKKIAYAWTDEELEKLQREMGK----GFVLQRYKGLGEMNPDQLWE 592

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           T M+   RTL+RV+I+ ++ S +     ++ LMG K   R ++I+    F
Sbjct: 593 TTMNPETRTLIRVQIDDEVRSSQR----VSTLMGDKVAPRREWIERHVQF 638


>gi|296447781|ref|ZP_06889695.1| DNA topoisomerase IV, B subunit [Methylosinus trichosporium OB3b]
 gi|296254700|gb|EFH01813.1| DNA topoisomerase IV, B subunit [Methylosinus trichosporium OB3b]
          Length = 672

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 372/646 (57%), Positives = 485/646 (75%), Gaps = 7/646 (1%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            YDA+SI +LEGLEPVR RPGMYIGG DE A+HHLF+EV+DN+MDE +AG+A+ IEVSL+
Sbjct: 30  EYDAASIEVLEGLEPVRRRPGMYIGGKDEAAMHHLFAEVLDNSMDEAVAGHASFIEVSLE 89

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G+LTV+DNGRGIPV  HPKFP KS LE+++T LHAGGKFD+  Y+ SGGLHGVG+SVV
Sbjct: 90  PDGWLTVIDNGRGIPVGPHPKFPKKSALEVVMTMLHAGGKFDSGAYQTSGGLHGVGVSVV 149

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+ L V VA+   ++ Q FSRG+P   LE+  ++ N+RGT+I F+PD +IFG    +
Sbjct: 150 NALSERLEVEVAQNQQLYRQIFSRGLPQGKLEELGRIANRRGTKIRFKPDAEIFGAATHW 209

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRS 281
             ARL +M +SKAYL G V+  W C   + E    +P +    FPGGL+ YL  + E + 
Sbjct: 210 RPARLFRMARSKAYLFGGVEIRWRCAPALIEPGSDVPAEAVLRFPGGLRDYLARETEGKD 269

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHESGLRVALTR 340
           L++ + F GK +++G H G++EWAIAW    +    SYCNTI T +GGTHE+G R+AL R
Sbjct: 270 LVADQPFVGKVQREGGH-GSLEWAIAWFTHEDGFSHSYCNTIPTPDGGTHEAGFRLALLR 328

Query: 341 GIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           G+K +AE     KRA  + +DDLM  +  ++SVFIREPEF GQ KT+L++++A R VEN 
Sbjct: 329 GLKDHAERIGQAKRAALLTADDLMGQSAAMISVFIREPEFQGQNKTRLMNVEASRVVENT 388

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
           +RD FDH+L   P +ATKLL++ +ER+EERLRRR ++E  RK+  RKLRLPGKLADC+  
Sbjct: 389 VRDAFDHWLAGAPSQATKLLDFAVERAEERLRRRAEKEQARKSPTRKLRLPGKLADCTNT 448

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
            A G+ELFIVEGDSAGGSAK AR+R++QAVLPLRGKILNVASAG EK   NQQ+ DL QA
Sbjct: 449 SAQGSELFIVEGDSAGGSAKAARDRASQAVLPLRGKILNVASAGKEKFAANQQLADLAQA 508

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           LGC + S YR+EDLRY+K+I+MTDADVDGAHIASLL+TFF+++M  LI+  HL+L  PPL
Sbjct: 509 LGCGSGSHYRDEDLRYDKIIVMTDADVDGAHIASLLITFFFRQMPKLIDGGHLYLAVPPL 568

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           +++TQG K+VYA D+ H+ +++++    GKGKIE SRFKGLGEM+ +QLKET MDA KRT
Sbjct: 569 YKLTQGAKTVYARDDRHRDELVKKVL-TGKGKIETSRFKGLGEMMPAQLKETTMDAKKRT 627

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           LL+V I       ++T D + +LMGTK + RF FIQERA F  ++ 
Sbjct: 628 LLKVVI--AGEEREETADCVERLMGTKPEARFAFIQERAPFATELD 671


>gi|453419|emb|CAA54665.1| gyrB [Mycoplasma hominis ATCC 23114]
          Length = 648

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 266/653 (40%), Positives = 361/653 (55%), Gaps = 26/653 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y+A +I+ILEGLE VR RPGMYIG    K LHHL  E++DN++DE +AG+A  I++ L  
Sbjct: 10  YNADNIQILEGLEAVRKRPGMYIGSIGFKGLHHLLWEIVDNSVDEAMAGFATEIKIKLYP 69

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           N  + V DNGRG+P   H     KS +E ILT LHAGGKFD S Y++SGGLHGVG SVVN
Sbjct: 70  NNVIEVEDNGRGMPTGIHS-GTKKSAVETILTVLHAGGKFDGSNYKVSGGLHGVGASVVN 128

Query: 164 ALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKAG 221
           ALS E  V V R   +  Q+F  G IP+ PLE        + GT I F PD  I   +  
Sbjct: 129 ALSSEFEVWVKRDGKLHYQQFRNGGIPVKPLEVIGNFSEVETGTTIKFHPDYTIMEKEN- 187

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F    ++  ++  AYL+  +K      ++   K        F F GGL  Y++   + + 
Sbjct: 188 FFFDTIIDHSKQIAYLNKGLKITVENVEKNIIKV-------FCFEGGLIDYVKELNKGKK 240

Query: 282 LISSEIFTGKTEKKGT-----HRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLR 335
           LI  E+   +               VE A+ + E     I SY N I T +GGTHE G  
Sbjct: 241 LIVPEVIYAEGVFNDKNFTNGQDVIVEVAMQYNEAYTNSIVSYANNIQTIDGGTHEQGFY 300

Query: 336 VALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            AL R    YAE  +  +     I  +D+    V I+S+   +P F GQTK KL + DA+
Sbjct: 301 DALVRIYNNYAETNKLFKTSSEKITREDVKEGLVAIISIKHTDPIFEGQTKGKLENKDAR 360

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK-TAIRKLRLPGK 452
                 L D  + YL +NP  A  ++E  +     RL   K RE +RK   +    LPGK
Sbjct: 361 IATNKILSDSLERYLNENPEIARAIIEKCLLSQHTRLLEIKAREASRKGNGLDLGNLPGK 420

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS   A   ELFIVEG+SAGGSAK  R+RS QA+LPLRGK++N        + +N++
Sbjct: 421 LADCSSKNAEIRELFIVEGNSAGGSAKMGRDRSIQAILPLRGKVINAEKNSFASVLSNKE 480

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++ ALG    +++    L+Y K+IIMTDADVDGAHI +LLLTFFY+ M  LIE   +
Sbjct: 481 IATMIHALGTGINTEFDINKLKYHKIIIMTDADVDGAHITTLLLTFFYRYMKPLIEYGFV 540

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           +L  PPL++IT G    YA+++  K++I+ +     K  + I R+KGLGEM   QL ET 
Sbjct: 541 YLAQPPLYKITSGKNVEYAYNDLQKEQIMAKL--EDKRNVAIQRYKGLGEMDPEQLWETT 598

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           MD   R +L+V+I+               LMG + + R  FIQE A + +++ 
Sbjct: 599 MDPETRKMLQVQIDDAAIC----DTVFATLMGEEIEPRHDFIQENAKYANNID 647


>gi|255284071|ref|ZP_05348626.1| DNA gyrase subunit B [Bryantella formatexigens DSM 14469]
 gi|255265416|gb|EET58621.1| DNA gyrase subunit B [Bryantella formatexigens DSM 14469]
          Length = 639

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 251/659 (38%), Positives = 348/659 (52%), Gaps = 35/659 (5%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A   YDA+SI +LEGLE VR RPGMYIG    K L+HL  E++DNA+DE +AGY + IEV
Sbjct: 2   AKKTYDAASISVLEGLEAVRKRPGMYIGSVSRKGLNHLVYEIVDNAVDEHLAGYCSQIEV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L+ +G  TV DNGRG+PV+ H K        ++ TTLHAGGKFDN +Y+ SGGLHGVG 
Sbjct: 62  YLEKDGSATVNDNGRGVPVDMHEK--GVPAERLVFTTLHAGGKFDNDSYKTSGGLHGVGS 119

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK----KEKVRNKRGTRITFRPDPKI 215
           SVVNALS  L V V+    I   +F RG+P+  LEK          K GT I F PDP+I
Sbjct: 120 SVVNALSTYLDVQVSLGGQIHHDRFERGVPVVELEKGLLPVTGKTKKTGTCINFLPDPEI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     F A  +       AYL+  +   +   +    ++       ++ P G+  +++ 
Sbjct: 180 FEK-TQFAAEEIKSRLHETAYLNPALTIIFEDRRGAETEHLE-----YHEPDGIIGFVKD 233

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGL 334
              N+  +       K E  G    TVE A  +  E +  +  +CN I   EGGTH +G 
Sbjct: 234 LNRNKETVQDPPVYLKGELDGI---TVECAFQYVNEFHENVLGFCNNIYNAEGGTHLTGF 290

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           + A T  +  YA       ++  +    D+      ++SV    P F GQTKTKL + DA
Sbjct: 291 KTAFTAIMNNYARELGILKEKDANFTGADIRNGMTAVVSVKHPAPRFEGQTKTKLDNQDA 350

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
            + V   + D    Y  +N     K+L      ++ R    K +              GK
Sbjct: 351 AKAVAKVVGDEAVLYFDRNLETLKKVLSCAERAAKIRRTEEKAKTNLLTKQKYSFDSNGK 410

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LA+C        E+FIVEGDSAGGSAK ARNRS QA++P+RGKILNV  A  +K+  N +
Sbjct: 411 LANCESRKPELCEIFIVEGDSAGGSAKMARNRSFQAIMPIRGKILNVEKASIDKVLANAE 470

Query: 513 IMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           I  ++ A GC       + +    LRY+K+IIM DADVDGAHI++LLLT FY+ M +LI 
Sbjct: 471 IKTMINAFGCGFSEGYGNDFDISKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIY 530

Query: 569 QKHLFLISPPLFRI--TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           + H+++  PPL++    +G +  Y +D++  +K  +  K        + R+KGLGEM A 
Sbjct: 531 EGHIYIAMPPLYKAMPARGPEE-YLYDDKALEKYRKTHKN-----FTLQRYKGLGEMDAQ 584

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           QL ET ++   R L RVEI     +   T+     LMGT+   R  FI E A   + + 
Sbjct: 585 QLWETTLNPETRVLRRVEIEDARMASSVTE----MLMGTEVPPRKAFIYEHAKDAE-LD 638


>gi|195978267|ref|YP_002123511.1| DNA topoisomerase IV subunit B [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195974972|gb|ACG62498.1| Topoisomerase IV subunit B ParE [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 649

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 242/652 (37%), Positives = 365/652 (55%), Gaps = 34/652 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY+  +I++LEGLE VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ N I+V+L+
Sbjct: 10  NYNDDAIQVLEGLEAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGNEIDVTLN 69

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G  T+ D+GRG+P   H       T+++I T LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 70  KDGSATISDSGRGMPTGQH--ALGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 127

Query: 163 NALSDELHVTVARQNTIFSQKFSRGI--PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           NALS  L V + R   ++ Q+F  G        +     ++K GTR+TF PD KIF    
Sbjct: 128 NALSSWLEVEITRDGAVYKQRFENGGRPVTGLEKIASAPKSKSGTRVTFMPDDKIFSTT- 186

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    + +  +  A+L   VK   +  +        P  EEF++  G++ ++    E++
Sbjct: 187 EFKWNTIAERLKESAFLLKTVKMTLTDLRGDD-----PVVEEFHYENGVQDFVAYLNEDK 241

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             ++  I+    E+       VE A+ + +   +   S+ N + T +GG+HE+GL+ A+T
Sbjct: 242 ETLTPVIYMEGQEQD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAIT 297

Query: 340 RGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395
           + +  YA  T    ++  ++   D       +LS+ + E   +F GQTK KL S  A+  
Sbjct: 298 KAMNDYARKTSLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPI 357

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGK 452
           VE+ + +    +L++N   A  L+   I+  + R   R+ R+ +R     K       GK
Sbjct: 358 VESIVSEKLTFFLLENGELAGHLIRKAIKARDAREAARRARDESRNGKKNKKDKGLLSGK 417

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N++
Sbjct: 418 LTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  +V  +G    + +  ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H+
Sbjct: 478 INTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHV 537

Query: 573 FLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           ++  PPL+++++G     K  YA  +   + + +EF K       + R+KGLGEM ASQL
Sbjct: 538 YIALPPLYKMSKGKGKSEKVSYAWTDGELEDLRKEFGKGA----TLQRYKGLGEMNASQL 593

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET MD + RTL+RV I+     L   +  ++ LMG KA  R ++I++  +F
Sbjct: 594 WETTMDPDTRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVTF 641


>gi|121889|sp|P21558|GYRB_HALSQ RecName: Full=DNA gyrase subunit B
 gi|99223|pir||A39135 DNA topoisomerase chain B homolog - Haloferax sp
 gi|149024|gb|AAB09605.1| DNA gyrase beta-subunit [Haloferax lucentense]
 gi|1899004|gb|AAB49900.1| DNA gyrase beta-subunit [Shuttle vector pMDS20]
          Length = 639

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 249/655 (38%), Positives = 364/655 (55%), Gaps = 26/655 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           S  + Y A  I++LEGLE VR RP MYIG TD + LHHL  EV+DN++DE +AG+ + IE
Sbjct: 2   SQDNEYGAGQIQVLEGLEAVRKRPAMYIGSTDSRGLHHLVYEVVDNSIDEALAGHCDAIE 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+L  +G ++V DNGRGIPV  H ++ ++  LE+I+T LHAGGKFDN +Y++SGGLHGVG
Sbjct: 62  VALHEDGSVSVTDNGRGIPVGTHEQY-DRPALEVIMTVLHAGGKFDNKSYQVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE---KVRNKRGTRITFRPDPKI 215
           ++VVNALS EL V V     +++ +F  G P     ++    +     GT I F PD  I
Sbjct: 121 VTVVNALSSELEVEVKHDGAVWTHRFEVGEPQVEEFERVRDLEPGEDTGTTIRFWPDDGI 180

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     FD   L    +  A+L+  V+   S ++         E   F F GG++ +++ 
Sbjct: 181 FET-TEFDFKTLENRLRELAFLNSGVEISLSDER-------TDESSTFLFEGGIREFVEY 232

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHESGL 334
             E ++ +  ++     E +G     VE A+   +E    I ++ N I T EGGTH +G 
Sbjct: 233 LNETKTALHDDVIYYDDESEGI---EVEIAMQATDELQGSIHAFANNINTREGGTHLTGF 289

Query: 335 RVALTRGIKKYAELTQNKRA---ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           + ALTR +  YA            ++  +D+      ++SV   +P+F GQTKTKL + +
Sbjct: 290 KTALTRVVNDYANSHDMLDDLDGDNLRGEDVREGLTAVISVKHPDPQFEGQTKTKLGNSE 349

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE+        +  +NP  AT ++   +E +  R   ++  E   RK+A+    LP
Sbjct: 350 VRGIVESVTHQQLGTFFEENPDTATAIISKAVEAARARKAAKQAEELTRRKSALESTSLP 409

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC       +ELFIVEGDSAGGSAKQ R+R  QA+LPL+GKILNV     ++I  N
Sbjct: 410 GKLADCQSRDPSESELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKHRLDRILEN 469

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
            +I  L+ A+G     ++  E  RY+++I+MTDADVDGAHI +LLLT  Y+ M  LIE  
Sbjct: 470 DEIRALITAIGGGVGDEFDIEKARYQRLILMTDADVDGAHIRTLLLTLLYRHMRPLIEAG 529

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           +++   PPL+R+     +  A DE  + +I+EE         ++ RFKGLGEM   QL +
Sbjct: 530 YVYAAQPPLYRVRYRGNTYDAMDEAERDRIIEEECNGNPT--QVQRFKGLGEMNPDQLWD 587

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T M+   R L R+ +              N LMG     R +FI++ A+  + V 
Sbjct: 588 TTMNPENRVLKRITVED----AAAADRMFNILMGDAVGPRKQFIKDHANDAEWVD 638


>gi|310825640|ref|YP_003957997.1| hypothetical protein ELI_0009 [Eubacterium limosum KIST612]
 gi|308737374|gb|ADO35034.1| hypothetical protein ELI_0009 [Eubacterium limosum KIST612]
          Length = 640

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 255/652 (39%), Positives = 372/652 (57%), Gaps = 22/652 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           ++  ++Y A  I++LEGLE V+ RPGMYIG T ++ LHHL  EV+DN++DE +AGY   I
Sbjct: 6   KNEKNDYTADQIQVLEGLEAVQKRPGMYIGSTGKQGLHHLVYEVVDNSIDEALAGYCKNI 65

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V++D N  +TVVD+GRGIP + + K   K+ +E+ LT LHAGGKF    Y++SGGLHGV
Sbjct: 66  VVTIDKNNGITVVDDGRGIPTDMNHKM-KKTGVELALTVLHAGGKFGGGGYKVSGGLHGV 124

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS EL V V +   I+ Q F++G   S LE          T + F+PDP IF 
Sbjct: 125 GVSVVNALSSELTVEVKQNKKIYHQTFAKGKKTSELEVTGNTNRTG-TTVHFQPDPDIFD 183

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   +D   L    +  A+L+  V    + ++E         KE + + GG+++Y++   
Sbjct: 184 ELV-YDFDVLEHRLRELAFLNKGVSITLADERE-----AEKRKETYCYEGGIRSYIEYMN 237

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           +N+  +  +I   + E       ++E A  +       I SY N I T EGG+H +G + 
Sbjct: 238 KNKDPLYEQIAYYEKEMDD---YSLEIAFQYTAGYSENIYSYANNIYTPEGGSHLNGFKS 294

Query: 337 ALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA      +    ++  +D+      I+S+ + +P+F GQTKTKL + + + 
Sbjct: 295 ALTRTINTYARKNNYIKGNDKNLTGEDVREGLTAIISIKLLDPQFEGQTKTKLGNPEVKG 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            VE  + D    +L +NP  A  ++E  +  S  R   +K RE   RK+A+    LPGKL
Sbjct: 355 IVETIVGDELSAFLEENPTIAKTVIEKTLSASRAREAAKKARELTRRKSALDTTALPGKL 414

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +E+FIVEGDSAGGSAK  R+   QA+LPLRGKILNV  +  ++I     +
Sbjct: 415 ADCREKDPSMSEIFIVEGDSAGGSAKSGRDSRIQAILPLRGKILNVEKSRLDRILTADTL 474

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ A G      +  E  RY K+IIMTDADVDGAHI +LLLTFFY+ M  LIE+ +++
Sbjct: 475 KSMITAFGTGVGEDFNVEKARYHKIIIMTDADVDGAHIRTLLLTFFYRYMRGLIEEGYVY 534

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           +  PPLF++ +G    Y ++E+   K+ E+     + K  I R+KGLGEM A QL ET M
Sbjct: 535 IAQPPLFKVARGQHVEYVYNEKALDKMFED---KDRSKYTIQRYKGLGEMDAHQLWETTM 591

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D + R L RV I           +    LMG K   R +FI+  A+ + ++ 
Sbjct: 592 DPSVRILNRVNIED----AAYADEVFTILMGDKVQPRKEFIERNAAKVKNLD 639


>gi|294083673|ref|YP_003550430.1| DNA topoisomerase IV subunit B [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663245|gb|ADE38346.1| DNA topoisomerase IV, B subunit [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 662

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 336/656 (51%), Positives = 446/656 (67%), Gaps = 8/656 (1%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
            N ++ DNYDAS+I +LEGLEPVR RPGMYIGGTDE+A HHL +E++DN+MDE +AG+AN
Sbjct: 8   GNAASDDNYDASNIEVLEGLEPVRHRPGMYIGGTDERAYHHLAAEILDNSMDEAVAGHAN 67

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I+  L+    L++ DNGRG+P  NHPKFP+KS +E+I+TTLHAGGKF   +Y  SGGLH
Sbjct: 68  RIDFHLESATTLSIRDNGRGMPTGNHPKFPDKSAVEVIMTTLHAGGKFSGKSYATSGGLH 127

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS  L V +AR   ++ Q FSRG PL  L +     N+RGT +TF PD +I
Sbjct: 128 GVGASVVNALSSALLVEIARDKKLYQQSFSRGKPLDALTEIGGAPNRRGTTVTFTPDTEI 187

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTYLQ 274
           FG+KA F  + L +M +SKAYL   V+  W CD   +A+   +P +   ++PGGL  YL 
Sbjct: 188 FGEKAHFRPSTLYRMARSKAYLFAGVEIRWQCDPALLADNDPVPAEAVLHYPGGLADYLN 247

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGL 334
               +++L+ S  F    E  G  +           E+    SYCNT+ T  GGTHE+G 
Sbjct: 248 DVTRDKALMVSTPFAEIAELDG-QKFEWAITWLGAGEDGFFHSYCNTVPTPSGGTHETGF 306

Query: 335 RVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           R A+ R ++ Y +L  N++A  + +DD++ +   +LSVF+R+P+F GQTK +LVS DA R
Sbjct: 307 RQAIVRALRNYGDLAGNRKAADLTADDVLANTGVMLSVFLRDPQFQGQTKDRLVSTDATR 366

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454
             E A+RD F+H+L  +   A  LLE  IER+EER RR+K++EV RK+A R+LRLPGKLA
Sbjct: 367 MTEQAVRDRFEHWLSADSARANFLLEAAIERAEERKRRKKEKEVARKSATRRLRLPGKLA 426

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC+ N    TELF+VEGDSAGGSAKQARNR  QAVLPLRGKILNVASA  EK+  NQ++ 
Sbjct: 427 DCTSNDLDLTELFLVEGDSAGGSAKQARNRKTQAVLPLRGKILNVASATVEKLSGNQELS 486

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           DL  ALG R    ++ +DLRY +V+IMTDADVDGAHIA+LL+T+FY+EM  LIE   L+L
Sbjct: 487 DLALALGVRPGKDFKVDDLRYGRVVIMTDADVDGAHIAALLMTYFYREMPQLIEAGRLYL 546

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL+RI QG K++YA D+  +  +LE      +GKI+ISRFKGLGEM  +QLKET M+
Sbjct: 547 AQPPLYRINQGGKTLYALDDAQRDTLLET-GFDKRGKIDISRFKGLGEMPPAQLKETTMN 605

Query: 635 ANKRTLLRVEINKDLNSLKD----TQDSINKLMGTKADERFKFIQERASF-IDDVG 685
              R LL+VE+ +  +   D    T   +N LMG KA+ RF +I++ A   + ++ 
Sbjct: 606 PASRRLLKVELPQRDSIGADLRRTTDQLVNTLMGKKAELRFGYIRDHAEDALANLD 661


>gi|71903198|ref|YP_280001.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS6180]
 gi|71802293|gb|AAX71646.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS6180]
          Length = 650

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 254/652 (38%), Positives = 374/652 (57%), Gaps = 24/652 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +     YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I
Sbjct: 9   EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHI 68

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGV
Sbjct: 69  KVFIEADNSITVVDDGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS +L V V +   I  Q+F RG  ++ LE          T + F PDP+IF 
Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVIGTTDVTG-TTVHFTPDPEIFT 186

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   FD   L K  Q  A+L+  +K   +  +   E     ++E F++ GG+ +Y++   
Sbjct: 187 ETTQFDYNVLAKRIQELAFLNRGLKISITDKRSGME-----QEEHFHYEGGIGSYVEFLN 241

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           + + +I         E +G     VE A+ +       + S+ N I T EGGTHE G R 
Sbjct: 242 DKKDVIFETPIYTDGELEGI---AVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRA 298

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA+  +   +   ++  +D+      ++SV    P+F GQTKTKL + +  +
Sbjct: 299 ALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
                  + F  +L++NP  A K++E  I  S+ R+  ++ RE   +K+ +    LPGKL
Sbjct: 359 ITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS N A+  ELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I
Sbjct: 419 ADCSSNDANQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 478

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             L  A+G    + +     RY+K++IMT ADVDGAHI +LLLT  Y+ M  ++E  +++
Sbjct: 479 RSLFTAMGTGFGADFDVSKARYQKLVIMTIADVDGAHIRTLLLTLIYRFMRPVLEAGYVY 538

Query: 574 LISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           +  PP++ +  G++   Y       E+  +  LE++   G+ K  + R+KGLGEM   QL
Sbjct: 539 IAQPPIYGVKVGSEIKEYIQPGIDQEDQLKTALEKYS-IGRSKPTVQRYKGLGEMDDHQL 597

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET MD   R + RV ++       +     + LMG + + R  FI+E A +
Sbjct: 598 WETTMDPENRLMARVTVDD----AAEADKVFDMLMGDRVEPRRNFIEENAVY 645


>gi|169350467|ref|ZP_02867405.1| hypothetical protein CLOSPI_01235 [Clostridium spiroforme DSM 1552]
 gi|169292787|gb|EDS74920.1| hypothetical protein CLOSPI_01235 [Clostridium spiroforme DSM 1552]
          Length = 642

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 231/654 (35%), Positives = 361/654 (55%), Gaps = 34/654 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +A ++YD S+I+ILEGLE VR RPGMYIG TD + LHHL  E++DNA+DE ++G+ + I+
Sbjct: 2   AAKNSYDESNIQILEGLEAVRKRPGMYIGSTDSRGLHHLVWEIVDNAIDEALSGFGDNIQ 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD-NSTYEISGGLHGV 157
           V++  +  + V D+GRG+P   H     +   E+ILT LHAGGKF+ +  Y+ SGGLHGV
Sbjct: 62  VTICKDNSIIVSDHGRGMPTGMH--ASGRPATEVILTVLHAGGKFNEDGGYKTSGGLHGV 119

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS  L VTV R   I+ Q+F  G       K     NK GT I F PD  IF 
Sbjct: 120 GASVVNALSTWLEVTVYRDGKIWQQRFENGGSKIGKLKVVGKTNKTGTTIHFLPDASIFS 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               ++ + + +     A+L   ++     ++   E         + +  GL  +++   
Sbjct: 180 T-TEYNFSTISERLMESAFLLKGIRIDLKDERSDKE-------VVYQYDNGLIAFVEYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
             + +++  I      +   +   V+ A+ +         S+ N + T +GG+HE+G R 
Sbjct: 232 YEKDVLNPIISI----EGINNEIEVDLAMQFTSGYQENTLSFVNLVRTSDGGSHETGFRS 287

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392
           ALTR   +YA       ++  ++  +D+      I+S+ + E   +F GQTK+KL + +A
Sbjct: 288 ALTRTFNEYARKYGLLKEKDKNLEGNDVREGLSAIISIKVPEHLLQFEGQTKSKLGTPEA 347

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE--ERLRRRKQREVNRKTAIRKLRLP 450
           +  V+N + +    YL +N   A  L++ +I+ ++  +  R+ ++     K   ++  L 
Sbjct: 348 RNVVDNIVYEKLSFYLEENKQIADVLIKKMIKAAQVRDAARKAREAARKGKGTRQEKILS 407

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLA          EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A    I  N
Sbjct: 408 GKLAPAQSKDKKRKELYLVEGDSAGGSAKQGRDRKYQAILPLRGKVINTEKAAMSDILKN 467

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    + + E+D  Y KVIIMTDAD DGAHI +LLLTFFY+ M  LI   
Sbjct: 468 EEIATIINTIGAGVGADFNEKDSNYNKVIIMTDADTDGAHIQTLLLTFFYRYMKGLITAG 527

Query: 571 HLFLISPPLFRITQ--GTKS--VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +++  PPL++I++  G K   +YA  ++  +   ++  K       + R+KGLGEM AS
Sbjct: 528 KVYIALPPLYKISKKNGKKEEAIYAWQDDELEDAKKKIGK----GYVVQRYKGLGEMNAS 583

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET M+   RTL++V I+         +  ++ LMG K + R ++I++   F
Sbjct: 584 QLWETTMNPETRTLIQVSIDD----AALVERRVSVLMGDKVEPRREWIEQNVQF 633


>gi|251796502|ref|YP_003011233.1| DNA topoisomerase IV subunit beta [Paenibacillus sp. JDR-2]
 gi|247544128|gb|ACT01147.1| DNA topoisomerase IV, B subunit [Paenibacillus sp. JDR-2]
          Length = 656

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 245/665 (36%), Positives = 357/665 (53%), Gaps = 41/665 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
               +   NY+A  I++LEGL  VR RPGMYIG T    LHHL  E++DNA+DE +A + 
Sbjct: 9   AKTAAPERNYEADDIQVLEGLTAVRKRPGMYIGSTSSSGLHHLVWEIVDNAVDEHLAKFC 68

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             I+V+L  NG +TV DNGRGIP   H       T +++ T LHAGGKF    Y+ SGGL
Sbjct: 69  TAIDVTLHKNGAVTVQDNGRGIPTGMHK--TGIPTPQVVYTILHAGGKFGGGGYKKSGGL 126

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSR----------GIPLSPLEKKEKVRNKRG 204
           HGVG SV NALS+ L V + R   I   +F            G P++ LE      N+ G
Sbjct: 127 HGVGASVTNALSEWLEVEIFRDGKIHKMRFEYWVDNKGKEHVGEPVTGLEITGNT-NRTG 185

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T++TF+PD ++F      +   L +  Q  A+L+  +K     D+   E       + F+
Sbjct: 186 TKVTFKPDGRVFQGGTSLNYDTLAERLQEIAFLNSGLKVTIKDDRSGKE-------DIFH 238

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG + ++Q   ++++++   +     EK       VE A+ + +     I S+ N+I 
Sbjct: 239 YEGGARQFVQYLNDDKTVLHDVVHFA-GEKDEI---EVEVALQYNDGYTETIASFVNSIP 294

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T  GGTHE+G + A TR + +YA       ++  ++  +DL    + ++++ + E EF G
Sbjct: 295 TRGGGTHETGFKTAYTRVMNEYARKAGLLKEKEKNLEGNDLREGMMSVINIKMSEVEFVG 354

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK +L S  A+  V+  + D    +L +NP  A  LL+  ++ S+ R   RK RE  R 
Sbjct: 355 QTKDQLGSASARSAVDAVVSDKMQVFLEENPQVAQMLLKKAVQASKAREAARKAREEIRS 414

Query: 442 TAIRK--LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
              +     L GKL           ELFIVEGDSAGGSAKQ R+  +QA+LPL+GK +N 
Sbjct: 415 GKKKSESSNLNGKLTPAQSKDFSRNELFIVEGDSAGGSAKQGRDSKHQAILPLKGKPMNP 474

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
             A    I  N++   ++ A+G     ++  E+  Y K+IIMTDAD DGAHI  LLLTFF
Sbjct: 475 EKAKLLDILKNEEYKAIISAIGAGVGPEFDAEECNYNKIIIMTDADTDGAHIQVLLLTFF 534

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEIS 615
           Y+ M  LI+   +++  PPL++IT+ +       YA  +E  Q  L+EF K+     E+ 
Sbjct: 535 YRYMKPLIDTGRVYIAQPPLYKITRKSGKLETVRYAWTDEQLQNYLKEFGKN----FELQ 590

Query: 616 RFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675
           R+KGLGEM   QL ET MD   RTLL+V+I          +  ++ LMG K D R ++I 
Sbjct: 591 RYKGLGEMNPDQLWETTMDPETRTLLQVQIED----AAKAERRVSALMGDKVDPRKRWII 646

Query: 676 ERASF 680
           E   F
Sbjct: 647 ENVDF 651


>gi|1052804|emb|CAA58771.1| DNA gyrase B subunit [Streptococcus pneumoniae]
          Length = 648

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 250/648 (38%), Positives = 374/648 (57%), Gaps = 22/648 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I+V 
Sbjct: 10  AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVF 69

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TVVD+GRGIPV    K   +  +E + T LH+GGKF    Y++SGGLHGVG+S
Sbjct: 70  IEPDDSITVVDDGRGIPVGIQEK-TGRPAVETVFTVLHSGGKFGGGGYKVSGGLHGVGLS 128

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L V V +   I  Q++ RG  ++ LE      +K GT + F PDPKIF +  
Sbjct: 129 VVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEIVGDT-DKTGTTVHFTPDPKIFTETT 187

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD  +L K  Q  A+L+  ++   +  ++  E     + + +++ GG+ +Y++   EN+
Sbjct: 188 IFDFDKLNKRIQELAFLNRGLQISITDKRQGLE-----QTKHYHYEGGIASYVEYINENK 242

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
            +I         E       TVE A+ +     E   S+ N I T EGGTHE G R ALT
Sbjct: 243 DVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALT 299

Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA   +  +    ++  +D+      ++SV    P+F GQTKTKL + +  +   
Sbjct: 300 RVINSYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 359

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
               + F  +L++NP  A +++E  ++        +R +    +K+ +    LPGKLADC
Sbjct: 360 RLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADC 419

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I  L
Sbjct: 420 SSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 479

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    +++     RY+K+++MTDADVDGAHI +LLLT  Y+ M  ++E  ++++  
Sbjct: 480 FTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQ 539

Query: 577 PPLFRITQGTKSV-YAHDEEHKQKILEEFKK---HGKGKIEISRFKGLGEMLASQLKETA 632
           PP++ +  G++   Y      ++  L+E       G+ K  I R+KGLGEM   QL ET 
Sbjct: 540 PPIYGVKVGSEIKEYIQPGADQEIKLQEALARYSEGRTKPTIQRYKGLGEMDDHQLWETT 599

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           MD   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 600 MDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643


>gi|291563505|emb|CBL42321.1| DNA topoisomerase IV subunit B [butyrate-producing bacterium SS3/4]
          Length = 639

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 244/659 (37%), Positives = 351/659 (53%), Gaps = 33/659 (5%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A   Y+A SI +LEGLE VR RPGMYIGG   K L+HL  E++DNA+DE +AG+   I V
Sbjct: 2   AKAQYNADSITVLEGLEAVRKRPGMYIGGVGTKGLNHLIYEIVDNAVDEHLAGFCTEITV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L+ +G  TV DNGRGIPVE H K    S   ++L+TLHAGGKFDN++Y+ SGGLHGVG 
Sbjct: 62  TLEADGSCTVKDNGRGIPVEMHKK--GVSAERVVLSTLHAGGKFDNNSYKTSGGLHGVGS 119

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK----KEKVRNKRGTRITFRPDPKI 215
           SVVNALSD + V ++R   ++  ++ +G P+  L+           + GT I F PDP I
Sbjct: 120 SVVNALSDRMKVKISRDGKVYYDEYEKGHPVIELKDGLLPVIGKSKETGTEINFLPDPTI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     F A  L       AYL+  +   +   +   E     E   ++ P G+  Y++ 
Sbjct: 180 FEK-TKFKAEWLKSRLHESAYLNPNLALHYVNKRAGEE-----EMITYHEPDGIIAYVRE 233

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
               +  +   ++     K    R  VE A  + +   E    +CN I T EGGTH  G 
Sbjct: 234 LNNGKDPVHEPVYF----KGSVDRIEVEVAFQFVDAFEENILGFCNNIFTQEGGTHLVGF 289

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           +   T+ I  YA       ++  +    D       +++V   +P F GQTKTKL S DA
Sbjct: 290 KTKFTQLINSYARELGILKEKDSNFTGADTRNGMTAVVAVKHPDPIFEGQTKTKLASADA 349

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
            + V     D  + +  +N      ++    + ++ R    K +      +       GK
Sbjct: 350 TKAVFTMTGDELERFFDRNLDTLKAIIACAEKSAKIRKAEEKAKTNMLSKSKFSFDSNGK 409

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LA+C        E+FIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +K+  N +
Sbjct: 410 LANCESRDPSKCEIFIVEGDSAGGSAKMGRNRQFQAILPIRGKILNVEKASMDKVLANAE 469

Query: 513 IMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           I  ++ A GC       + +    L+Y+K+++MTDADVDG+HI +LLLTF Y+ M +LI 
Sbjct: 470 IKTMINAFGCGFSEGYGNDFDITKLKYDKIVLMTDADVDGSHIDTLLLTFLYRFMPELIY 529

Query: 569 QKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
             H+++  PPL+++  +  +  Y +D+    K LEE+KK+  G   + R+KGLGEM A Q
Sbjct: 530 DGHVYIAMPPLYKVVPKRGEERYLYDD----KALEEYKKNHAGDFTLQRYKGLGEMDADQ 585

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           L ET ++   R L RVEI     + + T+     LMG+    R KFI + A   + +  
Sbjct: 586 LWETTLNPENRVLKRVEIEDARMASEVTE----LLMGSDVPPRKKFIYDHADEAE-IDA 639


>gi|291280736|ref|YP_003497570.1| DNA topoisomerase II, B subunit [Deferribacter desulfuricans SSM1]
 gi|290755438|dbj|BAI81814.1| DNA topoisomerase II, B subunit [Deferribacter desulfuricans SSM1]
          Length = 643

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 260/653 (39%), Positives = 363/653 (55%), Gaps = 19/653 (2%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           +   Y    I +L+GLEPVR RPGMYIG TD K LHHL  EV+DN++DE  AGY + IE+
Sbjct: 2   SQKTYTEKDIIVLKGLEPVRKRPGMYIGSTDNKGLHHLLWEVVDNSIDEATAGYCSEIEI 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +  +TV DNGRGIPV  HP+    STLE++LTTLHAGGKF+N  Y+ SGGLHGVGI
Sbjct: 62  TLHKDYSVTVKDNGRGIPVGPHPEL-KISTLEVVLTTLHAGGKFENKIYKASGGLHGVGI 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE--KKEKVRNKRGTRITFRPDPKIFG 217
           SVVNALS+ L V V R   ++ Q +S+G     L+  K     N  GT I F PD  IF 
Sbjct: 121 SVVNALSEYLEVYVKRNGNLYYQTYSKGQKQQELQILKTGLNPNDTGTTIHFLPDKTIFK 180

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F    + +  Q  +YL+  +K  +  + E       P+   F    GL+     K 
Sbjct: 181 T-TKFQPTIIEQRLQELSYLNKGLKIIFINELEEK-----PKTIVFLSEKGLEEMFSVKT 234

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337
           +N + + + I+     K+   + T  +       +  I SY N I T E GTH  G + A
Sbjct: 235 KNFTYLFNPIYIEDKNKEHDLQITCIFGFLQNYYDQTIYSYVNNIPTHEHGTHVDGFKNA 294

Query: 338 LTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           L++   KY    +      I S+D+      I+SV +  PEF GQTK KL + + +  V 
Sbjct: 295 LSKIFNKYKNTLKLNGKYKITSEDIREGLYSIISVKVINPEFEGQTKNKLGNKEVKEIVS 354

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADC 456
           N + +  + Y   N        +  +   + R   RK +E   RK       LPGKLADC
Sbjct: 355 NIIVEHLEKYFDINQQAFKLWYQKTLNTVQAREAARKAKETVRRKNVFETSTLPGKLADC 414

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      TELFIVEGDSAGGSAKQ+RN+  QAVLPL+GKI+NV  A   K+  N+++ +L
Sbjct: 415 SSKNVEKTELFIVEGDSAGGSAKQSRNKEFQAVLPLKGKIINVEKAYLVKLLENEEVKNL 474

Query: 517 VQALGCRTRS--QYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           + A+G       ++  ++LRY K+IIMTDADVDGAHI +LLLTFFY+ + ++I Q  LF+
Sbjct: 475 ITAIGVNVDKKGKFYVDNLRYGKIIIMTDADVDGAHITTLLLTFFYKYLPEIITQGKLFI 534

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI--LEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
             PPL++I    K  Y  D+   ++   + +     +  ++I RFKGLGEM   QL ET 
Sbjct: 535 AQPPLYKIRYKNKDYYIKDDYELEQFKKINKINSLEQENVQIQRFKGLGEMNPEQLWETT 594

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           M+ N R L++VEI+      +   +  + LMG    ER +FI+  A++  ++ 
Sbjct: 595 MNPNTRNLIQVEISD----FEAANNIFSILMGKNIKERKEFIENYATYA-NID 642


>gi|291523173|emb|CBK81466.1| DNA topoisomerase IV subunit B [Coprococcus catus GD/7]
          Length = 640

 Score =  579 bits (1493), Expect = e-163,   Method: Composition-based stats.
 Identities = 251/660 (38%), Positives = 359/660 (54%), Gaps = 35/660 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + +++Y+A SI +LEGLE VR RPGMYIG    K L+HL  E++DN++DE +AG+ + I 
Sbjct: 2   APTNSYNADSISVLEGLEAVRKRPGMYIGSVSRKGLNHLVYEIVDNSVDEHLAGFCSEIH 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+L+ +G  TV DNGRGIPV  H K    S   ++ TTLHAGGKFD+S Y+ SGGLHGVG
Sbjct: 62  VTLNKDGSATVSDNGRGIPVGMHKK--GISAERLVFTTLHAGGKFDDSAYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK----KEKVRNKRGTRITFRPDPK 214
            SVVNALS+ L VTV+R+   +  ++ RG+P  PLEK          K GT I+F PD +
Sbjct: 120 SSVVNALSEWLDVTVSREGCTYHDRYERGVPTIPLEKGLLPVIGRTRKTGTTISFLPDKE 179

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     F    +       AYL+  +   +   +   E     E+E ++ P GL  +++
Sbjct: 180 IFEKTW-FKEDEIKSRLHETAYLNPELTIIYEDKRVTPE-----EQEVYHEPDGLAGFIR 233

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESG 333
               N+  +   +   K E +G    TVE A  +  E +  +  +CN I   EGGTH +G
Sbjct: 234 DLNRNKEALHDIVC-FKGESEGI---TVEGAFQYVNEFHENVLGFCNNIYNAEGGTHITG 289

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            + A T  +  YA       ++  +    D+      ++S+   +P F GQTKTKL + D
Sbjct: 290 FKSAFTSIMNAYAREIGILKEKDGNFTGADIRNGMTAVISIKHPDPRFEGQTKTKLDNQD 349

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           A R     + +    Y  +N      +L    + ++ R    K R              G
Sbjct: 350 AARATGKIVNEEVVRYFDKNLDTLKVVLSCAEKAAKIRKTEEKARTNLLTKQKFSFDSNG 409

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLA+C    A   E+FIVEGDSAGGSAK ARNR  QA+LP+RGKILNV  A  +KI  N 
Sbjct: 410 KLANCESRNADICEIFIVEGDSAGGSAKTARNRHFQAILPIRGKILNVEKASIDKILANA 469

Query: 512 QIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
           +I  ++ + GC       + +    LRY K+IIM DADVDGAHI++LLLT FY+ M +LI
Sbjct: 470 EIKTMINSFGCGFSEGYGNDFDISKLRYNKIIIMADADVDGAHISTLLLTLFYRFMPELI 529

Query: 568 EQKHLFLISPPLFRI--TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
            + H+++  PPL++   ++G +  Y +D+    K LE+++K  KG   + R+KGLGEM A
Sbjct: 530 YEGHVYIAMPPLYKAMPSKGREE-YLYDD----KALEQYRKTHKGNFTLQRYKGLGEMDA 584

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +QL ET ++   R L +VEI       +   D    LMG     R  FI + A   + + 
Sbjct: 585 AQLWETTLNPETRILKKVEIED----ARIASDITGLLMGPDVPPRKAFIYKHAHDAE-LD 639


>gi|157964294|ref|YP_001499118.1| DNA topoisomerase IV subunit B [Rickettsia massiliae MTU5]
 gi|157844070|gb|ABV84571.1| DNA topoisomerase IV, B subunit [Rickettsia massiliae MTU5]
          Length = 662

 Score =  579 bits (1493), Expect = e-163,   Method: Composition-based stats.
 Identities = 330/660 (50%), Positives = 446/660 (67%), Gaps = 12/660 (1%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +    N+   +NY A  I +LEGLEPVR RPGMYIGGTD  A+HHL SEV+DNAMDE +A
Sbjct: 8   NKEKKNKLVDNNYSAKDIEVLEGLEPVRKRPGMYIGGTDSNAMHHLVSEVLDNAMDEAVA 67

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+A++I + +  +  +T+ DNGRGIP+++HPKFP+KS LE+ILTTLH+GGKF N+ Y  +
Sbjct: 68  GFASIITIKMHHDHSITIFDNGRGIPIDHHPKFPDKSALEVILTTLHSGGKFSNNVYHTA 127

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVGISVVNALS  L + V +Q  ++SQ +S+G  L+ L  +E  +  RGT I F P
Sbjct: 128 GGLHGVGISVVNALSKHLEIKVYKQGKLYSQSYSKGEKLTDLICEEASKRLRGTSINFTP 187

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           DP+IF +K  F+  ++ ++ +SKAYL   V   W C+ E+     IP+K    FP GLK 
Sbjct: 188 DPEIFSEKLHFNPKKIYELARSKAYLYRGVAIEWVCEVEVP--SDIPKKALISFPNGLKD 245

Query: 272 YLQTKLENRSLISSEIFTGK-TEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330
           YL +K+   +L+   IF G         +          + +  I SYCNT+ T +GGTH
Sbjct: 246 YLSSKITLDNLVIPGIFAGNIGSTPDRIKLEWAICWQNNDSSAFIQSYCNTVPTPQGGTH 305

Query: 331 ESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           E GL+ A+ RG+K Y E+  NK+A ++  +D++ +A  +LS+FI EP F GQTK KLVS 
Sbjct: 306 EQGLKSAILRGLKAYGEMIGNKKAANLTIEDILETASVVLSIFIAEPSFQGQTKEKLVSN 365

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
              + VEN ++D FDH+L ++   AT LLE VI  +E R+ ++ ++ ++RK A +KLRLP
Sbjct: 366 GVSKPVENIIKDHFDHFLSRDKALATNLLEHVISIAEFRISKKNEKNISRKNATQKLRLP 425

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC++    GTELFIVEGDSAGGSAKQARNR  QAVLPL GK+LNVAS+  EKI NN
Sbjct: 426 GKLADCTRTSPEGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSTLEKIVNN 485

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           Q I DL  AL C +   Y++E+LRYEK+IIMTDADVDGAHIASLL+TFF+  M  L+E+ 
Sbjct: 486 QAIQDLEIALACGSLKNYKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEEG 545

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           HL+L  PPL+R+TQ  K+ YA DEE K K+ ++  K  K KIE+ RFKGLGEM+ +QLKE
Sbjct: 546 HLYLAKPPLYRLTQSNKTYYAGDEEEKAKLTDKLLKASKAKIEVGRFKGLGEMMPAQLKE 605

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA-----SFIDDVG 685
           T M   KR+LL+V +       ++    ++ LMG K ++RF+FI E+A       I ++ 
Sbjct: 606 TTMHPEKRSLLKVTLED----FQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIISELD 661


>gi|88854504|ref|ZP_01129171.1| DNA topoisomerase IV subunit B [marine actinobacterium PHSC20C1]
 gi|88816312|gb|EAR26167.1| DNA topoisomerase IV subunit B [marine actinobacterium PHSC20C1]
          Length = 664

 Score =  579 bits (1493), Expect = e-163,   Method: Composition-based stats.
 Identities = 248/673 (36%), Positives = 368/673 (54%), Gaps = 22/673 (3%)

Query: 23  LKKSGEIPDSPAFANQS-ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEV 81
                ++P+S   +N   A+D+Y A  I+ILEGLE VR RPGMYIG T  + LHHL  EV
Sbjct: 3   STPENDVPESQIISNGHVAADSYGADQIQILEGLEAVRKRPGMYIGSTGPRGLHHLVYEV 62

Query: 82  IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141
           +DN++DE +AGY + I V +  +G + V DNGRGIPV+ + +   KST+E+++T LHAGG
Sbjct: 63  VDNSVDEALAGYCDTINVWIRKDGSVRVRDNGRGIPVDLN-QQEQKSTVEVVMTMLHAGG 121

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KF    Y +SGGLHGVGISVVNALS E+   V RQ  ++   F+ G+P+ PLE+  +   
Sbjct: 122 KFGGGGYAVSGGLHGVGISVVNALSAEIDTEVRRQGHVWRMSFANGVPVGPLEQ-GESTT 180

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           + GT+ TF P  + F     FD   L    Q  A+L+  ++   + +++  +       E
Sbjct: 181 ETGTQQTFWPSKETFET-VEFDFETLRARFQQMAFLNKGLRITITDERDEED-----VVE 234

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYC 319
            + +  GL  Y++   + +            E +    R ++E A+ W       + +Y 
Sbjct: 235 SYMYERGLVDYVEYLNKAKKNELIHPDVIAFESEDTEKRISLEVAMQWTAGYTESVHTYA 294

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           NTI T EGGTHE G R ALT  + +YA       ++  ++  DD+      ++S+ + EP
Sbjct: 295 NTINTHEGGTHEEGFRAALTSLVNRYAREKNIIKEKDENLSGDDVREGLTAVISIKLGEP 354

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F GQTKTKL + +A+  V+         +  +NP +A  ++   I+ S+ RL  RK RE
Sbjct: 355 QFEGQTKTKLGNTEAKAFVQRIAGQQLGDWFDRNPTQARDVIRKAIQASQARLAARKARE 414

Query: 438 VNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
             R+   +    +PGKL DCS      +E+FIVEGDSAGGSA Q RN   QA+LPLRGKI
Sbjct: 415 QTRRKGLLESSGMPGKLRDCSSKDPSLSEIFIVEGDSAGGSAVQGRNPEFQAILPLRGKI 474

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556
           LNV  A  ++   N ++  ++ A G      +  E  RY K+++M DADVDG HI +LLL
Sbjct: 475 LNVEKARLDRALGNAEVQAMITAFGAGVGEDFDPEKARYHKIVLMADADVDGQHITTLLL 534

Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIE-- 613
           T  ++ M  LI+  +++L  PPL+R+     +  Y + +  +  + E     GK   +  
Sbjct: 535 TLLFRYMRPLIDLGYVYLAQPPLYRLKWSNAQHEYVYSDTERDALTEAGLSAGKRMPKDN 594

Query: 614 -ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
            I R+KGLGEM   +L ET MD   RTLL+V ++          +  + LMG   + R  
Sbjct: 595 GIQRYKGLGEMDYKELWETTMDPADRTLLQVTLDD----AAAADEIFSTLMGEDVESRRN 650

Query: 673 FIQERASFIDDVG 685
           FIQ  A  +  + 
Sbjct: 651 FIQRNAKDVRFLD 663


>gi|118586892|ref|ZP_01544326.1| DNA topoisomerase IV, B subunit [Oenococcus oeni ATCC BAA-1163]
 gi|118432724|gb|EAV39456.1| DNA topoisomerase IV, B subunit [Oenococcus oeni ATCC BAA-1163]
          Length = 674

 Score =  579 bits (1492), Expect = e-163,   Method: Composition-based stats.
 Identities = 248/664 (37%), Positives = 371/664 (55%), Gaps = 34/664 (5%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +    +Y+ S I+ILEGLE VR+RPGMYIG TD + LHHL  E++DNA+DE++AGY + 
Sbjct: 9   TKKKEISYNESDIKILEGLEAVRVRPGMYIGSTDTRGLHHLVWEIVDNAVDEILAGYGDS 68

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+V +  +  +TVVD+GRG+PV  H     K T E+ILT LHAGGKF    Y+ +GGLHG
Sbjct: 69  IKVIIHQDNSITVVDHGRGMPVGMH--ASGKPTPEVILTVLHAGGKFGQGGYKTAGGLHG 126

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           VG SVVNALS+ L V + R    + + F   G P+  L+K  K +++ GT ITF+PDP I
Sbjct: 127 VGSSVVNALSERLTVEINRDGYKYRENFENGGKPVGSLKKIGKTKDQTGTTITFKPDPTI 186

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     +    +    +  A+L   +K     ++           EE+ +  G+K ++  
Sbjct: 187 FSTTV-YKFQTIADRLRESAFLLKGIKITLIDER-----PDPQIIEEYQYKDGIKEFVDY 240

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
             E +++I         E++G     VE A  + +   E   S+ N + T +GGTHE+G+
Sbjct: 241 LNEGKAVIGKV-MYFDGEQQGI---EVEVAAQYNDGYSETLLSFVNNVRTPDGGTHETGM 296

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390
           +VA T+    YA       ++  +    D+      ++++ + E   +F GQTK KL ++
Sbjct: 297 KVAWTKAFNDYARKAGLLKEKDPNFDGSDVREGLSVVINLRVPENILQFEGQTKEKLGTI 356

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR-- 448
           +A+  V + + +    YL++N   A  L+   +   E R   RK R+ +R    +K +  
Sbjct: 357 EARSAVGSVIEEQLGRYLMENGDFAQNLVRKALRAREARQAARKARDESRSGKKKKGKEF 416

Query: 449 -LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            L GKL       A   ELF+VEGDSAGGSAKQ R+R  QAVLPLRGK+LN   AG E++
Sbjct: 417 LLSGKLTPAQSKDASKKELFLVEGDSAGGSAKQGRSRKFQAVLPLRGKVLNTEKAGLEEL 476

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N++I  ++  +G    + +  +D  Y KVIIMTDAD DGAHI +LLLTFFY+ M  L+
Sbjct: 477 LKNEEISTMIYTIGAGVGTDFNIKDAAYNKVIIMTDADDDGAHIQTLLLTFFYKYMRPLV 536

Query: 568 EQKHLFLISPPLFRIT----QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
           E   +++  PPL+++T    +  K  +A   E     L E  K       I+R+KGLGEM
Sbjct: 537 EAGRVYIALPPLYKVTSGAKKNKKEEFAWTNEE----LAELTKKAARGYTITRYKGLGEM 592

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF-ID 682
            A+ L ET MD ++RTL+RV+I          +  +  LMG +   R K+I++  +F +D
Sbjct: 593 DANLLWETTMDPDQRTLIRVKIED----AALAEKRVTILMGDQVAPRRKWIEDNVAFSLD 648

Query: 683 DVGT 686
           + G+
Sbjct: 649 EAGS 652


>gi|225028802|ref|ZP_03717994.1| hypothetical protein EUBHAL_03081 [Eubacterium hallii DSM 3353]
 gi|224953886|gb|EEG35095.1| hypothetical protein EUBHAL_03081 [Eubacterium hallii DSM 3353]
          Length = 638

 Score =  579 bits (1491), Expect = e-163,   Method: Composition-based stats.
 Identities = 247/652 (37%), Positives = 353/652 (54%), Gaps = 29/652 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+A+SI +LEGLE VR RPGMYIG    + L+HL  E++DNA+DE +AGY + I+V LD
Sbjct: 6   TYNANSIAVLEGLEAVRKRPGMYIGSVSTRGLNHLIYEIVDNAVDEHLAGYCSNIQVILD 65

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G  T+ DNGRGIP   + K      +E++ T LHAGGKF    Y+ISGGLHGVG SVV
Sbjct: 66  EDGTATIQDNGRGIPTGINSK-TGIPAVEMVFTMLHAGGKFGTGGYKISGGLHGVGASVV 124

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221
           NALS  L V V  +  ++ Q + +G  ++PLE      +   GT +TF PD +IF     
Sbjct: 125 NALSVWLEVKVRSEGKVYQQMYEKGKAVAPLEVIGTCRKGDTGTTVTFLPDGEIFDKTY- 183

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F A  +       AYL+  +   +   +   E     E   F+   GLK Y++   + + 
Sbjct: 184 FKAESIKSRLHETAYLNPGLSITFENRRPGEE-----ETVLFHEEEGLKAYVRDLNKGKP 238

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            +   ++     KK      VE A  + +E    I  +CN I T EGGTH +G +   T 
Sbjct: 239 AVGEIVYF----KKKVDDIEVEAAFQYVDEFQETIMGFCNNICTMEGGTHITGFKTKFTS 294

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            + +YA       ++  +    D+      +LS+  ++P F GQTKTKL + DA + V  
Sbjct: 295 VMNQYARELGILKEKDKNFTGADVRNGMTAVLSIKHKDPRFEGQTKTKLDNPDAGKAVSE 354

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            L +    Y  +N  E  K++    + ++ R    + R      +   +   GKLA+C  
Sbjct: 355 VLGEELPLYYDRNLEELKKVIACAEKSAKIRKAEERARTNLISKSKFSIDTNGKLANCES 414

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E+FIVEGDSAGGSAK ARNR  QA+LP+RGKILNV  A  +K+  N +I  ++ 
Sbjct: 415 RNPEECEVFIVEGDSAGGSAKTARNRRTQAILPIRGKILNVEKASMDKVLANAEIKTMIH 474

Query: 519 ALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
             GC       + +    L+Y K++IMTDADVDGAHIA+LLLTFFY+ M DLI Q H++L
Sbjct: 475 TFGCGFSEGYGNDFDISKLKYNKIVIMTDADVDGAHIATLLLTFFYRFMPDLIHQGHVYL 534

Query: 575 ISPPLFR-ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
            +PPL++ I +  K  Y +D+    + LE ++K+ K    + RFKGLGEM A QL ET +
Sbjct: 535 ATPPLYKAIPKRGKEEYLYDD----RALENYRKNHKSNFTLQRFKGLGEMDAEQLWETTL 590

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +   R L +VEI       +   +  + LMG++   R  FI   A   D + 
Sbjct: 591 NPETRILKQVEIEDG----RLASEVTSMLMGSEVPPRRAFIHAHAQDAD-LD 637


>gi|256619114|ref|ZP_05475960.1| gram positive topoisomerase IV [Enterococcus faecalis ATCC 4200]
 gi|256959030|ref|ZP_05563201.1| gram positive topoisomerase IV [Enterococcus faecalis DS5]
 gi|256961877|ref|ZP_05566048.1| gram positive topoisomerase IV [Enterococcus faecalis Merz96]
 gi|256965075|ref|ZP_05569246.1| gram positive topoisomerase IV [Enterococcus faecalis HIP11704]
 gi|257079061|ref|ZP_05573422.1| gram positive topoisomerase IV [Enterococcus faecalis JH1]
 gi|257089935|ref|ZP_05584296.1| topoisomerase IV subunit B [Enterococcus faecalis CH188]
 gi|257416144|ref|ZP_05593138.1| gram positive topoisomerase IV [Enterococcus faecalis AR01/DG]
 gi|257419346|ref|ZP_05596340.1| topoisomerase IV [Enterococcus faecalis T11]
 gi|256598641|gb|EEU17817.1| gram positive topoisomerase IV [Enterococcus faecalis ATCC 4200]
 gi|256949526|gb|EEU66158.1| gram positive topoisomerase IV [Enterococcus faecalis DS5]
 gi|256952373|gb|EEU69005.1| gram positive topoisomerase IV [Enterococcus faecalis Merz96]
 gi|256955571|gb|EEU72203.1| gram positive topoisomerase IV [Enterococcus faecalis HIP11704]
 gi|256987091|gb|EEU74393.1| gram positive topoisomerase IV [Enterococcus faecalis JH1]
 gi|256998747|gb|EEU85267.1| topoisomerase IV subunit B [Enterococcus faecalis CH188]
 gi|257157972|gb|EEU87932.1| gram positive topoisomerase IV [Enterococcus faecalis ARO1/DG]
 gi|257161174|gb|EEU91134.1| topoisomerase IV [Enterococcus faecalis T11]
          Length = 663

 Score =  579 bits (1491), Expect = e-163,   Method: Composition-based stats.
 Identities = 233/635 (36%), Positives = 345/635 (54%), Gaps = 33/635 (5%)

Query: 59  RMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPV 118
           R RPGMYIG TD + LHHL  E++DNA+DE ++GY N I V++  +  + V D+GRG+P 
Sbjct: 2   RKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGNEINVTIQKDNSICVADSGRGMPT 61

Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178
             H       T+E+I T LHAGGKF    Y+ SGGLHGVG SVVNALS  L V + R   
Sbjct: 62  GMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSKWLEVHIVRDGV 119

Query: 179 IFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            + ++F  G  P+  L+K  K + + GT +TF PD  IF     F    L +  +  A+L
Sbjct: 120 EYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDDTIFSTTN-FSYEILAERLRESAFL 178

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
              VK   + ++        P++E F++  G+K ++    E +  ++  +      K+G 
Sbjct: 179 LKGVKITLTDER-----GEEPKEEVFHYEEGIKEFVAYLNEEKDTLTPVV-YFSGAKEGI 232

Query: 298 HRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               VE A  + +   E   S+ N + T +GGTHE G++ ++T+   +YA       ++ 
Sbjct: 233 ---EVELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKAYNEYARKVGLLKEKD 289

Query: 355 ISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
            ++   D       +LS+ + E   +F GQTK KL +  A+  V+N + +    YL +N 
Sbjct: 290 KNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLARTVVDNVVGEQMGFYLQENS 349

Query: 413 IEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLADCSQNIAHGTELFIV 469
             +  L+   I+  E R   RK RE +R    RK     L GKL           EL++V
Sbjct: 350 EMSQSLIRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLV 409

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           EGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I  N++I  ++  +G     ++ 
Sbjct: 410 EGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFS 469

Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG--TK 587
            ED  Y+K+IIMTDAD DGAHI  LLLTFFY+ M  LIE   +++  PPL+++++G   K
Sbjct: 470 IEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGTGKK 529

Query: 588 SV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645
           SV  YA  +    +++++  K       + R+KGLGEM A QL ET MD   RTL+RV I
Sbjct: 530 SVIEYAWTDGELAEVIDKVGK----GYMLQRYKGLGEMNAEQLWETTMDPETRTLIRVRI 585

Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           +         +  +  LMG K + R K+I++   F
Sbjct: 586 DD----AAQAERRVTTLMGDKVEPRRKWIEQHVQF 616


>gi|295396857|ref|ZP_06806985.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Aerococcus viridans ATCC
           11563]
 gi|294974883|gb|EFG50582.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Aerococcus viridans ATCC
           11563]
          Length = 707

 Score =  579 bits (1491), Expect = e-163,   Method: Composition-based stats.
 Identities = 245/663 (36%), Positives = 368/663 (55%), Gaps = 33/663 (4%)

Query: 29  IPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDE 88
           + D     NQ+    YD SSI++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE
Sbjct: 9   VNDLAKPTNQNNKSTYDESSIQVLEGLEAVRKRPGMYIGSTDARGLHHLVYEIVDNSIDE 68

Query: 89  VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148
             +GYA+ I V+L  +G   V DNGRG+P+  H     K T+E+ILT LHAGGKF  S Y
Sbjct: 69  AFSGYADHITVTLAKDGSAIVTDNGRGMPIGKH--TSGKPTVEVILTVLHAGGKFGGSGY 126

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           + SGGLHGVG SVVNALS +   TV R    + Q+F+ G      + K       GT+I 
Sbjct: 127 KTSGGLHGVGSSVVNALSSKFIATVHRDGKEYYQEFTNGGKPGKPKTKAFKSKNTGTKIQ 186

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F PD +IFG+   FD + + +  +  A+L   ++  +  +    E       E F++  G
Sbjct: 187 FYPDAEIFGNI-KFDPSTIREHLRESAFLLKDLRIDFIDEINETE-------ETFHYAEG 238

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           +K ++    E++ ++   +F    E    +   +E A  + +     + S+ N + T +G
Sbjct: 239 IKAFVDYLNEDKDVLHDVVFFQGVE----NGIEIELAFQYNDGYSETVLSFVNNVRTADG 294

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQT 383
           GTHESG+R  LT+   +YA        +  ++   D+      +LS+ + E   +F GQT
Sbjct: 295 GTHESGMRTGLTKSFNEYARKVDLLKTKEKNLEGSDVREGYTAVLSLRVPEEILQFEGQT 354

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443
           K+KL +  A+   +  + +    YL++N   A  L+   ++  E R   RK RE +R   
Sbjct: 355 KSKLGTPQARSASDKIVSENLAVYLIENGETAQMLVRKALKAREARDAARKAREASRGAK 414

Query: 444 IRKLRL--PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            ++  +   GKL       A   ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   
Sbjct: 415 GKRKEVLLSGKLTPAQGRNAKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEK 474

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
           A  + I  N+++  ++  +G    +++  ED  Y+KVIIMTDAD DGAHI  LLLTFF++
Sbjct: 475 ASIQDILKNEELNTIIYTIGAGVGAEFEVEDANYDKVIIMTDADTDGAHIQVLLLTFFFR 534

Query: 562 EMYDLIEQKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
            M  L+E   ++L  PPL+++++G      + YA  ++  + + ++  K       + R+
Sbjct: 535 YMKPLVEAGKVYLAMPPLYKVSKGKGKNEITEYAWTDDELKAVTDKVGK----GYILQRY 590

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           KGLGEM A QL ET MD   RTL+RV I+     L   +  ++ LMG K + R K+I++ 
Sbjct: 591 KGLGEMNADQLWETTMDPETRTLVRVTIDD----LSLAEKRVSVLMGNKVEPRRKWIEDN 646

Query: 678 ASF 680
            +F
Sbjct: 647 VAF 649


>gi|169825626|ref|YP_001695784.1| DNA gyrase subunit B [Lysinibacillus sphaericus C3-41]
 gi|168990114|gb|ACA37654.1| DNA gyrase subunit B [Lysinibacillus sphaericus C3-41]
          Length = 644

 Score =  579 bits (1491), Expect = e-163,   Method: Composition-based stats.
 Identities = 255/648 (39%), Positives = 376/648 (58%), Gaps = 22/648 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y+A  I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AG+   I+V++
Sbjct: 14  QAYEADQIQVLEGLEAVRKRPGMYIGSTSSKGLHHLVWEIVDNSIDEALAGFCTDIQVTI 73

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           +   ++ V DNGRGIPV    K   K  +E+I+T LHAGGKF    Y++SGGLHGVG SV
Sbjct: 74  EKENWIRVEDNGRGIPVSIQEKM-GKPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASV 132

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS E  V V R+  I   KF RG  +  L+      ++ GT   F+ DP+IF +   
Sbjct: 133 VNALSVETIVQVHREGHIHEIKFQRGKTIQELKIIGDT-DRNGTTTRFKADPEIFKETTV 191

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L    +  AYL+  +K   + ++E  E+        +++ GG+++Y++   +++ 
Sbjct: 192 YEYDILAHRIRELAYLNRGIKITIADEREGEERSTT-----YHYEGGIRSYVEHLNQSKE 246

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340
            I   I     EK G    +VE A+ +         S+ N I T EGGTHESG + ALTR
Sbjct: 247 PIHDPIDVL-GEKDGI---SVEIAMQYNAGFSSNIFSFANNINTYEGGTHESGFKTALTR 302

Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  YA      +    ++  +D+      I+SV   +P+F GQTKTKL + +  +   +
Sbjct: 303 VINDYARKGGLLKEADANLTGEDVREGLTAIVSVKHPDPQFEGQTKTKLGNSEVSQITNS 362

Query: 399 ALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
              D F+ ++++NP  A K++E  ++        ++ +    RK A+    LPGKLADCS
Sbjct: 363 LFSDGFERFMLENPTVARKVVEKGLMAARARVAAKKAREFTRRKNALEVSSLPGKLADCS 422

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                  E++IVEGDSAGGSAK  R+R  QA+LPLRGKILNV  A  +KI +N +I  ++
Sbjct: 423 STNPADCEIYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDKILSNAEIRAMI 482

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A G     ++  E  RY K+IIMTDADVDGAHI +LLLTFF++ +  LIE  ++++  P
Sbjct: 483 TAFGTGIGEEFNLEKARYHKIIIMTDADVDGAHIRTLLLTFFFRFLRPLIEAGYIYIAQP 542

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+++ QG    Y +D+E  ++ILE   K    K  + R+KGLGEM A QL +T MD   
Sbjct: 543 PLYQVKQGKHVEYCYDDETLKEILERLPK--MPKPNVQRYKGLGEMNAEQLWDTTMDPEH 600

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           RTLL+VE++  +        +  +LMG + + R +FI+E A +  ++ 
Sbjct: 601 RTLLQVELDDAIK----ANQAFERLMGDEVEPRRQFIEENAVYA-NLD 643


>gi|326518120|dbj|BAK07312.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 722

 Score =  579 bits (1491), Expect = e-163,   Method: Composition-based stats.
 Identities = 236/668 (35%), Positives = 374/668 (55%), Gaps = 23/668 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86
                S A   +  +  Y A+++++LE L+ VR RPGMYIG T  + LHHL  E++DNA+
Sbjct: 65  ASTAASDAMQEKRVAGEYTAANVQVLEALDGVRKRPGMYIGSTGPRGLHHLVYEILDNAV 124

Query: 87  DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN- 145
           DE  AGYA  I V L  +  ++V DNGRGIP + HP+   KS +E +LT +HAGGKF   
Sbjct: 125 DEAQAGYATEINVVLHDDNSVSVTDNGRGIPTDIHPQ-TKKSCVETVLTLMHAGGKFGGS 183

Query: 146 -STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP---LEKKEKVRN 201
            S+Y ++GGLHGVG+SVVNALS+ L VTV R    + Q +SRG PL+        ++  +
Sbjct: 184 TSSYSVAGGLHGVGLSVVNALSEALEVTVCRDGKEYRQHYSRGKPLTMLSSTTLPDESSS 243

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           ++G+ I F PD +IF     FD + +    +  A+L+  +    + +    E+    +  
Sbjct: 244 RQGSCIRFWPDKEIFTTTIEFDFSTISSRIRELAFLNPELTITLTKE----EQDAQVQHN 299

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
           E+ + GGL  Y+     ++  +   I   K         +++W       +  +  Y N+
Sbjct: 300 EYCYAGGLVEYVAWLNTDKKPLHDPIAFRKELDGIIVDVSLQWCS--DSYSDTVLGYANS 357

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I T +GGTH  GL+ +LTR I  +A+ ++    + IS+  + +      I+SV +  PEF
Sbjct: 358 IRTIDGGTHIEGLKTSLTRTINNFAKKSKIMKDKDISLSGEHVREGMTCIISVKVPNPEF 417

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREV 438
            GQTKT+L + + +R VE ++++    YL  +P     +L   +         +R +  V
Sbjct: 418 EGQTKTRLGNPEVRRIVEQSVQENLTEYLELHPDVLDSILSKSLNALKAALAAKRARELV 477

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
             K+ ++   LPGKLADC+ +     E+FIVEGDSAGGSAKQ R+R  QA+LPLRGKILN
Sbjct: 478 RTKSVLKSSSLPGKLADCASSNPAECEIFIVEGDSAGGSAKQGRDRKFQAILPLRGKILN 537

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLT 557
           +       +  N++I +L+  LG   + +  +++ LRY K++I+TDADVDGAHI +LLLT
Sbjct: 538 IERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKEALRYHKIVILTDADVDGAHIRTLLLT 597

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
           FF++    L ++  +++  PPL+++ +G +  Y +DE   + ++  F  +        RF
Sbjct: 598 FFFRYQRALFDEGCIYVGVPPLYKVERGKQVHYCYDEADLKDLVNTFPTN--ASYNTQRF 655

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           KGLGEM+  QL ET MD  +R L ++ +   +    +     + LMG + + R + IQ+ 
Sbjct: 656 KGLGEMMPLQLWETTMDPERRLLKQLTVEDAV----EANVVFSSLMGARVEYRKELIQKA 711

Query: 678 ASFIDDVG 685
           AS + ++ 
Sbjct: 712 ASIV-NLD 718


>gi|297810505|ref|XP_002873136.1| hypothetical protein ARALYDRAFT_487191 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297318973|gb|EFH49395.1| hypothetical protein ARALYDRAFT_487191 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 729

 Score =  579 bits (1491), Expect = e-163,   Method: Composition-based stats.
 Identities = 249/690 (36%), Positives = 389/690 (56%), Gaps = 27/690 (3%)

Query: 9   FSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGG 68
           F      +Q   ++   S     + A    + S  Y +  I++LEGL+PVR RPGMYIG 
Sbjct: 53  FQFTNVLNQRLIQRNAVSSRFLSTEASQETTTSKGYSSEQIQVLEGLDPVRKRPGMYIGS 112

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T  + LHHL  E++DNA+DE  AG+A+ ++V L  +G ++VVDNGRGIP + HP    KS
Sbjct: 113 TGPRGLHHLVYEILDNAIDEAQAGFASKVDVVLHADGSVSVVDNGRGIPTDLHP-ATKKS 171

Query: 129 TLEIILTTLHAGGKFDNST--YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           +LE +LT LHAGGKF  ++  Y +SGGLHGVG+SVVNALS+ L VTV R      Q +SR
Sbjct: 172 SLETVLTVLHAGGKFGGTSSGYSVSGGLHGVGLSVVNALSEALEVTVWRDGMEHKQNYSR 231

Query: 187 GIPLSPLEKKE---KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           G P++ L  +    +    +GT I F PD ++F     FD   +    +  A+L+ +V  
Sbjct: 232 GKPITTLTCRVLTLESERTKGTSIRFWPDKEVFTTAIEFDHNTIAGRIRELAFLNPKVTI 291

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
               + +  EK    +  E+YF GGL  Y+     +++ I   +      ++  +  TV+
Sbjct: 292 SLKKEDDDPEKN---QYSEYYFAGGLTEYVSWLNTDKNPIHDVLGF----RREINGATVD 344

Query: 304 WAIAWCE--ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359
            A+ WC    +  +  Y N+I T +GGTH  G++ +LTR +   A+ ++   ++ IS+  
Sbjct: 345 VALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNALAKKSKTVKEKDISLSG 404

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           + +      I+SV I  PEF GQTKT+L + + ++ V+ ++++    +L  +P     ++
Sbjct: 405 EHVREGLTCIVSVKIPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEFLELHPDVLESIV 464

Query: 420 EWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
              +         +R +  V  K+ ++   LPGKLADCS      +E+FIVEGDSAGGSA
Sbjct: 465 SKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPEASEIFIVEGDSAGGSA 524

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR-SQYREEDLRYEK 537
           KQ R+R  QA+LPLRGKILN+       +  N++I +L+  LG   +   +++E+LRY K
Sbjct: 525 KQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKENLRYHK 584

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           +II+TDADVDGAHI +LLLTFF++    L +   +++  PPLF++ +G  + Y +D+   
Sbjct: 585 IIILTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKHAHYCYDDADL 644

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           +KI   F  +      I RFKGLGEM+  QL ET M+   R L ++ ++     + +   
Sbjct: 645 KKITSNFPAN--ASYNIQRFKGLGEMMPEQLWETTMNPETRILKQLVVDD----IAEANM 698

Query: 658 SINKLMGTKADERFKFIQERAS--FIDDVG 685
           + + LMG + D R + I+  A+   +  + 
Sbjct: 699 TFSSLMGARVDVRKELIKNAATRINLQRLD 728


>gi|164510802|emb|CAK18883.1| topoisomerase II subunit B [Staphylococcus pseudintermedius]
          Length = 611

 Score =  579 bits (1491), Expect = e-163,   Method: Composition-based stats.
 Identities = 234/626 (37%), Positives = 360/626 (57%), Gaps = 20/626 (3%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIG T E+ LHHL  E++DN++DE +AGYA+ IEV ++ + ++ V DNGRGIPV+   K
Sbjct: 1   MYIGSTSERGLHHLVWEIVDNSIDEALAGYADNIEVVIEKDNWIKVTDNGRGIPVDIQEK 60

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
              +  +E+ILT LHAGGKF    Y++SGGLHGVG SVVNALS+ L V V R   I  Q 
Sbjct: 61  M-GRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSETLEVYVHRDGRIHHQA 119

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           + +G+P   L++     ++ GT I F+ D  IF +   ++   L K  +  A+L+  ++ 
Sbjct: 120 YHKGVPAFDLKQVGDT-DQTGTVIRFKADGTIFQETTVYNYETLQKRIRELAFLNKGIRI 178

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
             + +++         ++ +++ GG+K+Y++   EN+  +  E       +       VE
Sbjct: 179 TLTDERDEE----NVREDSYHYEGGIKSYVELINENKEPLHDEPIYVHQTRDDI---EVE 231

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISD 360
            A+ +       + +Y N I T EGGTHE G + ALTR +  Y   ++  +        +
Sbjct: 232 IALQYNSGFATNLLTYANNIHTYEGGTHEDGFKRALTRVLNNYGTQSKLIKEDKDRLSGE 291

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D       ++S+   +P+F GQTKTKL + + ++ V+    + F+ +L ++P  A  ++E
Sbjct: 292 DTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQIVDRVFSELFERFLYEHPQVARIIVE 351

Query: 421 WVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
             I  S  R+  +K RE   RK+A+    LPGKLADCS      +E+F+VEGDSAGGS K
Sbjct: 352 KGIMASRARIAAKKAREVTRRKSALDISSLPGKLADCSSKDPSESEIFLVEGDSAGGSTK 411

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
             R+   QA+LPLRGKILNV  A  +KI NN +I  +V A G     ++     RY K++
Sbjct: 412 SGRDSRTQAILPLRGKILNVEKARLDKILNNNEIRQMVTAFGTGIGGEFDISKARYHKIV 471

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599
           IMTDADVDGAHI +LLLTFFY+ M  LIE  ++++  PPL+++TQG +  Y  ++    K
Sbjct: 472 IMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRELDK 531

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
           + E+   +   K  I+R+KGLGEM A QL ET M+   R +L+V ++  +    +   + 
Sbjct: 532 LKEKL--NPTPKWSIARYKGLGEMNADQLWETTMNPENRAMLQVTLDDAI----EADQTF 585

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
             LMG   + R +FI++ A +  ++ 
Sbjct: 586 EMLMGDVVENRRQFIEDNAVYA-NLD 610


>gi|73916278|gb|AAZ93007.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916280|gb|AAZ93008.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916282|gb|AAZ93009.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916284|gb|AAZ93010.1| DNA gyrase subunit B [Streptococcus pneumoniae]
          Length = 648

 Score =  579 bits (1491), Expect = e-163,   Method: Composition-based stats.
 Identities = 251/648 (38%), Positives = 375/648 (57%), Gaps = 22/648 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I+V 
Sbjct: 10  AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVF 69

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGVG S
Sbjct: 70  IEPDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 128

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L V V +   I  Q++ RG  ++ LE      +K GT + F PDPKIF +  
Sbjct: 129 VVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEIVGDT-DKTGTTVHFTPDPKIFTETT 187

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD  +L K  Q  A+L+  ++   +  ++  E     + + +++ GG+ +Y++   EN+
Sbjct: 188 IFDFDKLNKRIQELAFLNRGLQISITDKRQGLE-----QTKHYHYEGGIASYVEYINENK 242

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
            +I         E       TVE A+ +     E   S+ N I T EGGTHE G R ALT
Sbjct: 243 DVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALT 299

Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA   +  +    ++  +D+      ++SV    P+F GQTKTKL + +  +   
Sbjct: 300 RVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 359

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
               + F  +L++NP  A +++E  ++        +R +    +K+ +    LPGKLADC
Sbjct: 360 RLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADC 419

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I  L
Sbjct: 420 SSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 479

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    +++     RY+K+++MTDADVDGAHI +LLLT  Y+ M  ++E  ++++  
Sbjct: 480 FTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQ 539

Query: 577 PPLFRITQGTKSV-YAHDEEHKQKILEEFKK---HGKGKIEISRFKGLGEMLASQLKETA 632
           PP++ +  G++   Y      ++  L+E       G+ K  I R+KGLGEM   QL+ET 
Sbjct: 540 PPIYGVKVGSEIKEYIQPGADQEIKLQEALARYSEGRTKPTIQRYKGLGEMDDHQLRETT 599

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           MD   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 600 MDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643


>gi|268319492|ref|YP_003293148.1| DNA topoisomerase IV subunit B [Lactobacillus johnsonii FI9785]
 gi|262397867|emb|CAX66881.1| DNA topoisomerase IV subunit B [Lactobacillus johnsonii FI9785]
          Length = 661

 Score =  579 bits (1491), Expect = e-163,   Method: Composition-based stats.
 Identities = 246/659 (37%), Positives = 362/659 (54%), Gaps = 34/659 (5%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A AN++ S +YD SSI+IL GLE VR RPGMYIG TD   L+HL  E++DN++DE +AGY
Sbjct: 11  AKANKTTS-SYDDSSIQILHGLEAVRKRPGMYIGSTDRHGLNHLIYEIVDNSVDEAMAGY 69

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
              I V++  +  +TV D GRG+P   H       T+E+ILT LHAGGKF    Y+ SGG
Sbjct: 70  GKEINVTIHKDNSVTVQDFGRGMPTGMHE--SGIPTIEVILTVLHAGGKFTEKNYQTSGG 127

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPD 212
           LHGVG SVVNALS  L V V R    + ++F   G P+  L+   K ++K GT ITF+PD
Sbjct: 128 LHGVGSSVVNALSSYLKVRVVRDGQAYEEEFENGGHPIGTLKHLGKTKDKNGTTITFKPD 187

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P IF     ++   + +  +  A+L   VK   + ++E          +EF +  G+K++
Sbjct: 188 PTIFST-TTYNYETIQERIRESAFLLKGVKFTLTDEREPE------HHDEFLYEDGIKSF 240

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHE 331
           +    E++  +  ++F    ++ G     VE++  + +   E   S+ N + T +GG+HE
Sbjct: 241 VSYLNEDKDTMG-DVFYFSGKQNGI---EVEFSGQYNDGYSENFVSFVNNVRTADGGSHE 296

Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREP--EFAGQTKTKL 387
           +G R   T+    YA+     +         D       +LSV I E   EF GQTK KL
Sbjct: 297 AGARSGFTKAFNDYAKKQGLLKNKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKL 356

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--R 445
            +  A+  V++ + +   +YL++N   A  L++   +  + R   +K R+ +R      +
Sbjct: 357 GTPQARSVVDSIVYEQLSYYLMENGEFAQSLVQKAQKARDAREAAKKARDESRSGKKRRK 416

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
           K  L GKL           ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  +
Sbjct: 417 KEILSGKLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQ 476

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
            I  N++I  ++  +G    S ++ +D  Y+K+IIMTDAD DGAHI  LLLTFFY+ M  
Sbjct: 477 DIFKNEEINTMIHTIGAGVGSDFQIKDANYDKIIIMTDADTDGAHIQILLLTFFYRYMRP 536

Query: 566 LIEQKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
           ++E   +++  PPL+++ +G     K  YA  +E   +  ++  K       + RFKGLG
Sbjct: 537 MVEAGRVYIALPPLYKLQKGNGAKAKIKYAWTDEELSEDSKDMGK----GFALQRFKGLG 592

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           EM A QL ET M+   RTL+RV+I+      +  +  +  LMG K   R K+I E   F
Sbjct: 593 EMNADQLWETTMNPETRTLIRVKIDD----AQLAEKRVTTLMGDKVAPRRKWIDENVKF 647


>gi|116491056|ref|YP_810600.1| DNA topoisomerase IV subunit B [Oenococcus oeni PSU-1]
 gi|116091781|gb|ABJ56935.1| DNA topoisomerase IV subunit B [Oenococcus oeni PSU-1]
          Length = 674

 Score =  579 bits (1491), Expect = e-163,   Method: Composition-based stats.
 Identities = 248/664 (37%), Positives = 371/664 (55%), Gaps = 34/664 (5%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +    +Y+ S I+ILEGLE VR+RPGMYIG TD + LHHL  E++DNA+DE++AGY + 
Sbjct: 9   TKKKEISYNESDIKILEGLEAVRVRPGMYIGSTDTRGLHHLVWEIVDNAVDEILAGYGDS 68

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+V +  +  +TVVD+GRG+PV  H     K T E+ILT LHAGGKF    Y+ +GGLHG
Sbjct: 69  IKVIIHQDNSITVVDHGRGMPVGMH--ASGKPTPEVILTVLHAGGKFGQGGYKTAGGLHG 126

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           VG SVVNALS+ L V + R    + + F   G P+  L+K  K +++ GT ITF+PDP I
Sbjct: 127 VGSSVVNALSERLTVEINRDGYKYRENFENGGKPVGSLKKIGKTKDQTGTTITFKPDPTI 186

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     +    +    +  A+L   +K     ++           EE+ +  G+K ++  
Sbjct: 187 FSTTV-YKFQTIADRLRESAFLLKGIKITLIDER-----PDPQIIEEYQYKDGIKEFVDY 240

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
             E +++I         E++G     VE A  + +   E   S+ N + T +GGTHE+G+
Sbjct: 241 LNEGKAVIGKV-IYFDGEQQGI---EVEVAAQYNDGYSETLLSFVNNVRTPDGGTHETGM 296

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390
           +VA T+    YA       ++  +    D+      ++++ + E   +F GQTK KL ++
Sbjct: 297 KVAWTKAFNDYARKAGLLKEKDPNFDGSDVREGLSVVINLRVPENILQFEGQTKEKLGTI 356

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR-- 448
           +A+  V + + +    YL++N   A  L+   +   E R   RK R+ +R    +K +  
Sbjct: 357 EARSAVGSVIEEQLGRYLMENGDFAQNLVRKALRAREARQAARKARDESRSGKKKKRKEF 416

Query: 449 -LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            L GKL       A   ELF+VEGDSAGGSAKQ R+R  QAVLPLRGK+LN   AG E++
Sbjct: 417 LLSGKLTPAQSKDASKKELFLVEGDSAGGSAKQGRSRKFQAVLPLRGKVLNTEKAGLEEL 476

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N++I  ++  +G    + +  +D  Y KVIIMTDAD DGAHI +LLLTFFY+ M  L+
Sbjct: 477 LKNEEISTMIYTIGAGVGTDFNIKDAAYNKVIIMTDADDDGAHIQTLLLTFFYKYMRPLV 536

Query: 568 EQKHLFLISPPLFRIT----QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
           E   +++  PPL+++T    +  K  +A   E     L E  K       I+R+KGLGEM
Sbjct: 537 EAGRVYIALPPLYKVTSGAKKNKKEEFAWTNEE----LAELTKKAARGYTITRYKGLGEM 592

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF-ID 682
            A+ L ET MD ++RTL+RV+I          +  +  LMG +   R K+I++  +F +D
Sbjct: 593 DANLLWETTMDPDQRTLIRVKIED----AALAEKRVTILMGDQVAPRRKWIEDNVAFSLD 648

Query: 683 DVGT 686
           + G+
Sbjct: 649 EAGS 652


>gi|25026562|ref|NP_736616.1| DNA gyrase subunit B [Corynebacterium efficiens YS-314]
 gi|23491841|dbj|BAC16816.1| putative DNA gyrase subunit B [Corynebacterium efficiens YS-314]
          Length = 687

 Score =  579 bits (1491), Expect = e-163,   Method: Composition-based stats.
 Identities = 258/697 (37%), Positives = 373/697 (53%), Gaps = 63/697 (9%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +   NYDASSI ILEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AGYA+ ++
Sbjct: 3   NTEHNYDASSITILEGLEAVRKRPGMYIGSTGSRGLHHLIWEVVDNSVDEAMAGYADRVD 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+L  +G + V+DNGRGIPVE H       T+++++T LHAGGKFD+ +Y +SGGLHGVG
Sbjct: 63  VTLLEDGGVEVIDNGRGIPVEMH--ASGAPTVQVVMTQLHAGGKFDSDSYAVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           ISVVNALS  +   + +    + Q F+  IP   +E         GT I F PD +IF  
Sbjct: 121 ISVVNALSTRVEAHIKKDGKHWYQNFNNSIPEDLVE--GANARGTGTSIRFWPDAEIFET 178

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE---------------- 262
              FD   + +  Q  A+L+  +    + ++   E+  +    E                
Sbjct: 179 T-DFDFDTISRRLQEMAFLNKGLTMTLTDNRASDEELELEALAEQGDTAVELSLDQIDAD 237

Query: 263 -------------------------FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                                    F++P GL+ Y+      ++ I   I + + +    
Sbjct: 238 GETQLVDAEVTDAPKKPKKREKKKIFHYPNGLEDYVNHLNRTKTPIHPSIVSFEAKA--- 294

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               VE A+ W       + ++ NTI T EGGTHE G R ALT  + +YA   +   ++ 
Sbjct: 295 AEHEVEIAMQWNSSYKESVHTFANTINTFEGGTHEEGFRSALTSLMNRYAREHKLLKEKE 354

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
            ++  DD       ++SV + EP+F GQTKTKL + + +  V+    +   H+L  NP E
Sbjct: 355 ANLTGDDCREGLSAVISVRVSEPQFEGQTKTKLGNTEIKSFVQRMANEHIGHWLEANPAE 414

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   +  ++ RL  RK R+ V RK+A     LPGKLADC       +EL+IVEGDS
Sbjct: 415 AKVIINKAVGSAQARLAARKARDLVRRKSATDLGGLPGKLADCRSKDPEKSELYIVEGDS 474

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKILNV  A  +K+  N ++  ++ ALG     ++    L
Sbjct: 475 AGGSAKSGRDSMFQAILPLRGKILNVEKARLDKVLKNSEVQAIITALGTGIHDEFDINKL 534

Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAH 592
           RY K+++M DADVDG HIA+LLLT  ++ M DLI + H++L  PPL+++     +  +A+
Sbjct: 535 RYHKIVLMADADVDGQHIATLLLTLLFRFMPDLIAEGHVYLAQPPLYKLKWQRGEPGFAY 594

Query: 593 DEEHKQKILEEFKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648
            +E + + LEE    G+ KI     I R+KGLGEM  ++L ET MD + R L RV    D
Sbjct: 595 SDEERDQQLEEGLAAGR-KINKDDGIQRYKGLGEMNPNELWETTMDPSVRILRRV----D 649

Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           L   +   +  + LMG     R  FI   A  +  + 
Sbjct: 650 LADAQRADELFSILMGDDVVARRSFITRNAKDVRFLD 686


>gi|21309845|gb|AAM46064.1|AF263924_3 DNA gyrase beta subunit [Peanut witches'-broom phytoplasma]
          Length = 648

 Score =  578 bits (1490), Expect = e-163,   Method: Composition-based stats.
 Identities = 257/661 (38%), Positives = 360/661 (54%), Gaps = 28/661 (4%)

Query: 33  PAFANQSASD--NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
                ++  +   Y ASSI ILEGLE VR +PGMYI     K  +HL  E+IDN++DE +
Sbjct: 2   SKNDKKNKENLGEYSASSIEILEGLEAVRKKPGMYIDSVTMKGAYHLIWEIIDNSIDEAL 61

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN----S 146
           AGYA  I + +  +  ++V DNGRGIPV+ HPK   KS +E ILTTLHAGGKF N     
Sbjct: 62  AGYATEIILKIFPDNVVSVSDNGRGIPVDIHPK-TKKSAVETILTTLHAGGKFKNAPNSK 120

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
            Y  SGG HGVG SVVNALS    V +     I+ QK+ +G+P + L+        RGT 
Sbjct: 121 NYSYSGGQHGVGASVVNALSTWFTVEICLNGKIYYQKYEKGVPTTSLQIIGNTNK-RGTN 179

Query: 207 ITFRPDPKIFGDKAGFDA--ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           I F PD  IF D          L K  Q  A+L+  VK      +        P+   FY
Sbjct: 180 IKFLPDETIFQDIKNTPYSLDVLKKRVQQLAFLNKNVKLIIEDLR-----LEPPQIINFY 234

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
             GG++ YLQ   EN+ +++   +   +E        +E A  + E     I S+ N I 
Sbjct: 235 SKGGIQEYLQYLNENKKVLNQPFYQESSENN----IFLEIAFQYNENYISNIYSFVNNIP 290

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G ++AL R + KYA+     K+ +S I +D +     I+++   +P F GQ
Sbjct: 291 THEGGTHEEGFKMALNRILSKYAKDKNLLKKDLSFIGEDTLEGITAIIALKHYDPLFEGQ 350

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRK 441
           TK +L + D ++ V        + YL++NP EA K+++  +         ++ +    +K
Sbjct: 351 TKARLGNYDMRQFVSKHFGIALESYLLENPQEAKKIIDKCLLAAKARVAAKKAREITRKK 410

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +  L    KLADC        EL+IVEGDSAGGSAKQ R+ S QA+LPLRGKI+NV  
Sbjct: 411 SPLDTLSFASKLADCRTKDPSLAELYIVEGDSAGGSAKQGRDSSFQAILPLRGKIINVEK 470

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
           A   KI  N +I+ L+Q+ G     ++     RY K+IIMTDADVDGAHI +LLLTFF++
Sbjct: 471 ARLNKILVNNEIISLIQSFGTGFDKEFNISKARYHKIIIMTDADVDGAHIRTLLLTFFFR 530

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
           +   LIE  +++   PPL+++    K  Y + E+  +  +    K+   KI + R+KGLG
Sbjct: 531 QFRPLIENNYIYFAQPPLYKVQNNKKISYFYTEQDLKNFMSR--KNNSQKIVVQRYKGLG 588

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           EM A QL ET MD   RTLL+V++   +    +       LMG +   R  FIQE A++ 
Sbjct: 589 EMNAEQLWETTMDPATRTLLQVKLEDAV----EADRIFTMLMGEEVSNRKIFIQENATYA 644

Query: 682 D 682
           D
Sbjct: 645 D 645


>gi|290890537|ref|ZP_06553612.1| hypothetical protein AWRIB429_1002 [Oenococcus oeni AWRIB429]
 gi|290479933|gb|EFD88582.1| hypothetical protein AWRIB429_1002 [Oenococcus oeni AWRIB429]
          Length = 674

 Score =  578 bits (1490), Expect = e-163,   Method: Composition-based stats.
 Identities = 248/664 (37%), Positives = 371/664 (55%), Gaps = 34/664 (5%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +    +Y+ S I+ILEGLE VR+RPGMYIG TD + LHHL  E++DNA+DE++AGY + 
Sbjct: 9   TKKKEISYNESDIKILEGLEAVRVRPGMYIGSTDTRGLHHLVWEIVDNAVDEILAGYGDS 68

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+V +  +  +TVVD+GRG+PV  H     K T E+ILT LHAGGKF    Y+ +GGLHG
Sbjct: 69  IKVIIHQDNSITVVDHGRGMPVGMH--ASGKPTPEVILTVLHAGGKFGQGGYKTAGGLHG 126

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           VG SVVNALS+ L V + R    + + F   G P+  L+K  K +++ GT ITF+PDP I
Sbjct: 127 VGSSVVNALSERLTVEINRDGYKYRENFENGGKPVGSLKKIGKTKDQTGTTITFKPDPTI 186

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     +    +    +  A+L   +K     ++           EE+ +  G+K ++  
Sbjct: 187 FSTTV-YKFQTIADRLRESAFLLKGIKITLIDER-----PDPQIIEEYQYKDGIKKFVDY 240

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
             E +++I         E++G     VE A  + +   E   S+ N + T +GGTHE+G+
Sbjct: 241 LNEGKAVIGKV-MYFDGEQQGI---EVEVAAQYNDGYSETLLSFVNNVRTPDGGTHETGM 296

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390
           +VA T+    YA       ++  +    D+      ++++ + E   +F GQTK KL ++
Sbjct: 297 KVAWTKAFNDYARKAGLLKEKDPNFDGSDVREGLSVVINLRVPENILQFEGQTKEKLGTI 356

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR-- 448
           +A+  V + + +    YL++N   A  L+   +   E R   RK R+ +R    +K +  
Sbjct: 357 EARSAVGSVIEEQLGRYLMENGDFAQNLVRKALRAREARQAARKARDESRSGKKKKGKEF 416

Query: 449 -LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            L GKL       A   ELF+VEGDSAGGSAKQ R+R  QAVLPLRGK+LN   AG E++
Sbjct: 417 LLSGKLTPAQSKDASKKELFLVEGDSAGGSAKQGRSRKFQAVLPLRGKVLNTEKAGLEEL 476

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N++I  ++  +G    + +  +D  Y KVIIMTDAD DGAHI +LLLTFFY+ M  L+
Sbjct: 477 LKNEEISTMIYTIGAGVGTDFNIKDAAYNKVIIMTDADDDGAHIQTLLLTFFYKYMRPLV 536

Query: 568 EQKHLFLISPPLFRIT----QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
           E   +++  PPL+++T    +  K  +A   E     L E  K       I+R+KGLGEM
Sbjct: 537 EAGRVYIALPPLYKVTSGAKKNKKEEFAWTNEE----LAELTKKAARGYTITRYKGLGEM 592

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF-ID 682
            A+ L ET MD ++RTL+RV+I          +  +  LMG +   R K+I++  +F +D
Sbjct: 593 DANLLWETTMDPDQRTLIRVKIED----AALAEKRVTILMGDQVAPRRKWIEDNVAFSLD 648

Query: 683 DVGT 686
           + G+
Sbjct: 649 EAGS 652


>gi|296284083|ref|ZP_06862081.1| DNA topoisomerase IV subunit B [Citromicrobium bathyomarinum JL354]
          Length = 662

 Score =  578 bits (1490), Expect = e-163,   Method: Composition-based stats.
 Identities = 347/653 (53%), Positives = 456/653 (69%), Gaps = 10/653 (1%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
              ++S +YD+SSI +LEGLEPVR RPGMYIGGTD++ALHHL +EV+DN+MDE +AG+A 
Sbjct: 8   GTPTSSGDYDSSSIEVLEGLEPVRRRPGMYIGGTDDRALHHLAAEVLDNSMDEAVAGHAT 67

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            IEV L+    LT+ DNGRG+P++ HPKFP KSTLE+IL+TLH+GGKF    Y  SGGLH
Sbjct: 68  RIEVKLEEGNRLTIADNGRGMPIDEHPKFPGKSTLEVILSTLHSGGKFSGKAYATSGGLH 127

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS+   V VAR  T+++Q+FS+G  L P+E      N+RGT ++F PDP+I
Sbjct: 128 GVGVSVVNALSEHTRVEVARDKTLYAQEFSKGQTLGPIETVGAAPNRRGTTVSFTPDPEI 187

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           FG    F A RL K+ +SKAYL   V+  W C   +A    +PE+E F FPGGL  +L  
Sbjct: 188 FGP-RQFSAKRLFKLARSKAYLFAGVEIRWKCAPSLATDD-VPEEETFKFPGGLADHLTQ 245

Query: 276 KLENRSLISSEIFTGKTE---KKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHE 331
           ++  R  ++++ F G  +     G   G VEWAIAW    +   + YCNT+ T +GGTHE
Sbjct: 246 RVAGRECVTAQPFAGSQDFPSVDGVSNGRVEWAIAWPLFSDAATSWYCNTVPTPDGGTHE 305

Query: 332 SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            GLR ALT+G++ + EL   K+A  I +DD+M  A  +LSVFIR+P+F  QTK +L S +
Sbjct: 306 QGLRNALTKGLRAFGELVGQKKAKDISADDVMAGAEVLLSVFIRDPQFQSQTKDRLTSPE 365

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRL 449
           A + VENA+RD FDH+L  N      LL  V+ER +ERLRRR +REV RKTA   +KLRL
Sbjct: 366 ATKLVENAVRDHFDHFLADNMERGKALLGEVMERMDERLRRRAEREVKRKTATNAKKLRL 425

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKL DCS      TELFIVEGDSAGGSAKQAR+R  QA+LP+RGKILNVASA ++KIR 
Sbjct: 426 PGKLTDCSGEGDKETELFIVEGDSAGGSAKQARDRKTQAILPIRGKILNVASASADKIRA 485

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N +I DL+ ALGC  R     + LRY++V+IMTDADVDGAHIA+LL+TFF+QEM D++ +
Sbjct: 486 NSEIADLILALGCGVRKDCDADQLRYDRVVIMTDADVDGAHIATLLMTFFFQEMPDIVRK 545

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
            HLFL  PPL+R+T G +S YA DEEH++++ E   K    KIEISRFKGLGEM  +QL+
Sbjct: 546 GHLFLAQPPLYRLTAGKESRYARDEEHRRELEETVFK--GKKIEISRFKGLGEMNPAQLR 603

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           ET M  + R+L+R+ +  +       ++ + +LMG   + RF+FIQ +A  +D
Sbjct: 604 ETTMHPDSRSLIRITLPPEFEDRAAVKELVGQLMGRNPEHRFQFIQNKAGDLD 656


>gi|257082500|ref|ZP_05576861.1| DNA topoisomerase IV subunit B [Enterococcus faecalis E1Sol]
 gi|257086693|ref|ZP_05581054.1| gram positive topoisomerase IV [Enterococcus faecalis D6]
 gi|256990530|gb|EEU77832.1| DNA topoisomerase IV subunit B [Enterococcus faecalis E1Sol]
 gi|256994723|gb|EEU82025.1| gram positive topoisomerase IV [Enterococcus faecalis D6]
          Length = 663

 Score =  578 bits (1490), Expect = e-163,   Method: Composition-based stats.
 Identities = 233/635 (36%), Positives = 345/635 (54%), Gaps = 33/635 (5%)

Query: 59  RMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPV 118
           R RPGMYIG TD + LHHL  E++DNA+DE ++GY N I V++  +  + V D+GRG+P 
Sbjct: 2   RKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGNEINVTIQKDNSICVADSGRGMPT 61

Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178
             H       T+E+I T LHAGGKF    Y+ SGGLHGVG SVVNALS  L V + R   
Sbjct: 62  GMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSKWLEVHIVRDGV 119

Query: 179 IFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            + ++F  G  P+  L+K  K + + GT +TF PD  IF     F    L +  +  A+L
Sbjct: 120 EYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDDTIFSTTN-FSYEILAERLRESAFL 178

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
              VK   + ++        P++E F++  G+K ++    E +  ++  +      K+G 
Sbjct: 179 LKGVKITLTDER-----GEEPKEEVFHYEEGIKEFVAYLNEEKDTLTPVV-YFSGAKEGI 232

Query: 298 HRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               VE A  + +   E   S+ N + T +GGTHE G++ ++T+   +YA       ++ 
Sbjct: 233 ---EVELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKAYNEYARKVGLLKEKD 289

Query: 355 ISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
            ++   D       +LS+ + E   +F GQTK KL +  A+  V+N + +    YL +N 
Sbjct: 290 KNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLARTVVDNVVGEQMGFYLQENS 349

Query: 413 IEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLADCSQNIAHGTELFIV 469
             +  L+   I+  E R   RK RE +R    RK     L GKL           EL++V
Sbjct: 350 EMSQSLIRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLV 409

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           EGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I  N++I  ++  +G     ++ 
Sbjct: 410 EGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFS 469

Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG--TK 587
            ED  Y+K+IIMTDAD DGAHI  LLLTFFY+ M  LIE   +++  PPL+++++G   K
Sbjct: 470 IEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGTGKK 529

Query: 588 SV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645
           SV  YA  +    +++++  K       + R+KGLGEM A QL ET MD   RTL+RV I
Sbjct: 530 SVIEYAWTDGELAEVIDKVGK----GYMLQRYKGLGEMNAEQLWETTMDPETRTLIRVRI 585

Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           +         +  +  LMG K + R K+I++   F
Sbjct: 586 DD----AAQAERRVTTLMGDKVEPRRKWIEQHVQF 616


>gi|7437456|pir||T10005 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) - Mycobacterium
           leprae
 gi|1262356|emb|CAA94712.1| DNA gyrase B [Mycobacterium leprae]
          Length = 697

 Score =  578 bits (1490), Expect = e-163,   Method: Composition-based stats.
 Identities = 245/690 (35%), Positives = 363/690 (52%), Gaps = 49/690 (7%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
              A + A D Y A+SI ILEGLE VR RPGMY+G T E+ LHHL  EV+DN++DE +AG
Sbjct: 19  TVAAQRKAQDEYGAASITILEGLEAVRKRPGMYVGSTGERGLHHLIWEVVDNSVDEAMAG 78

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF--DNSTYEI 150
           YA  ++V L  +G + V DNGRGIPV  H       T+++++T LHAGGKF   +S Y +
Sbjct: 79  YATQVDVRLFDDGSVEVADNGRGIPVAVH--ATGVPTVDVVMTQLHAGGKFGGKDSGYNV 136

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS  + V + R    +SQ + + +P     K+ +     GT I F 
Sbjct: 137 SGGLHGVGVSVVNALSTRVEVDIKRDGYEWSQFYDKAVPGIL--KQGEATEATGTTIRFW 194

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY--------------- 255
            DP IF     +D   + +  Q  A+L+  +      ++   ++                
Sbjct: 195 ADPDIFET-TKYDFGTVARRIQEVAFLNKGLTINLVDERVKQDEVVDDVVSDTAEAPVAM 253

Query: 256 ------------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
                              F++PGGL  +++     ++ I   I     +  G     VE
Sbjct: 254 TVEEKSTESSAPHKVRHRTFHYPGGLVDFVKHINRTKTPIQQSIIDFDGKGAGH---EVE 310

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISD 360
            A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +     +  ++  D
Sbjct: 311 VAMQWNGGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLTGD 370

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D+      ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP++A  ++ 
Sbjct: 371 DIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQRVCNEQLIHWFEANPVDAKAVVN 430

Query: 421 WVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
             I  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGGSAK
Sbjct: 431 KAISSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRSSELYVVEGDSAGGSAK 490

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
             R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY K++
Sbjct: 491 SGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDISRLRYHKIV 550

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQ 598
           +M DADVDG HI++LLLT  ++ M  LIE  ++FL  PPL+++        +A+ +  + 
Sbjct: 551 LMADADVDGQHISTLLLTLLFRFMRPLIEHGYVFLAQPPLYKLKWQRMDPEFAYSDSERD 610

Query: 599 KILE---EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
            +LE   +  K    +  I R+KGLGEM A +L ET MD + R L +V ++         
Sbjct: 611 GLLETGLKLGKKINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAA 666

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
            +  + LMG   D R  FI   A  +  + 
Sbjct: 667 DELFSILMGEDVDARRSFITRNAKDVRFLD 696


>gi|167755161|ref|ZP_02427288.1| hypothetical protein CLORAM_00666 [Clostridium ramosum DSM 1402]
 gi|167705211|gb|EDS19790.1| hypothetical protein CLORAM_00666 [Clostridium ramosum DSM 1402]
          Length = 641

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 248/655 (37%), Positives = 363/655 (55%), Gaps = 19/655 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +    +YD S I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AGYA
Sbjct: 1   MSEEKVEHSYDESDIQVLEGLEAVRKRPGMYIGTTSIRGLHHLVWEIVDNSIDEALAGYA 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I V L  +  + V+D+GRG+P   H K    ST+E I T LHAGGKF    Y++SGGL
Sbjct: 61  SHIRVILKDDDVVQVIDDGRGMPTGTHAK-TGISTVETIFTVLHAGGKFGGGGYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS+ L V V R    + Q+F  G   +   K     +  GT +TF+ D  
Sbjct: 120 HGVGASVVNALSEWLEVNVHRDGHEYYQRFENGGKPAGELKIIGDSDITGTIVTFKADKI 179

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   +D   L +  +  A+L+  ++      +   ++        +Y+ GG+K Y+ 
Sbjct: 180 IFKEGTVYDYDTLRQRIRELAFLNKGLRLSLEDQRNGVDRKHE-----YYYEGGIKEYVA 234

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  EI   +         T+E  + + +     I S+CN I T EGGTHE G
Sbjct: 235 YINKNKTPIHEEIIYVE---DMQQEITIEVGMQYNDGYQSNIYSFCNNINTHEGGTHEEG 291

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R+ALTR I  YA+      K   ++  DD+      I+SV   +P++ GQTKTKL + +
Sbjct: 292 FRLALTRVINNYAKSKGLLKKDEEALSGDDVREGLTAIISVKHPDPQYEGQTKTKLGNAE 351

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLP 450
            ++   N +    D +L++NP  A  +++  I         ++ +    RK  +    LP
Sbjct: 352 VRKIASNIISASLDKFLLENPDTAKIIVDKAIVAARARMAAKKAREMTRRKNVLEVSNLP 411

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS   A   E+FIVEGDSAGGSAK  R+R  QA+LPLRGKILNV  +  EKI  N
Sbjct: 412 GKLADCSSKDASECEIFIVEGDSAGGSAKMGRDRRIQAILPLRGKILNVEKSRLEKILGN 471

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
            +I  ++ A G     ++  + LRY K++IMTDADVDG HI  L+LTF Y+ +  L+E  
Sbjct: 472 AEIRSMITAFGTGIGEEFNLDKLRYHKIVIMTDADVDGGHIRILMLTFLYRYLRPLVEGG 531

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
            ++   PPL+ +  G    Y + +E    +  +  +    K  I R+KGLGEM A QL E
Sbjct: 532 FVYAAQPPLYLLKHGKDEYYCYSDEELDDLKTKIGE--GAKYSIQRYKGLGEMNAEQLWE 589

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T MD  KR L ++++++ +    +     + LMG K + R +FIQE A ++ D+ 
Sbjct: 590 TTMDPEKRILNQIDLDEAM----EADMIFDMLMGEKVEPRREFIQENAKYVTDLD 640


>gi|15826870|ref|NP_301133.1| DNA gyrase subunit B [Mycobacterium leprae TN]
 gi|221229348|ref|YP_002502764.1| DNA gyrase subunit B [Mycobacterium leprae Br4923]
 gi|13638292|sp|Q59533|GYRB_MYCLE RecName: Full=DNA gyrase subunit B
 gi|13092417|emb|CAC29513.1| putative DNA gyrase subunit B [Mycobacterium leprae]
 gi|219932455|emb|CAR70098.1| putative DNA gyrase subunit B [Mycobacterium leprae Br4923]
          Length = 678

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 245/688 (35%), Positives = 363/688 (52%), Gaps = 49/688 (7%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            A + A D Y A+SI ILEGLE VR RPGMY+G T E+ LHHL  EV+DN++DE +AGYA
Sbjct: 2   AAQRKAQDEYGAASITILEGLEAVRKRPGMYVGSTGERGLHHLIWEVVDNSVDEAMAGYA 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF--DNSTYEISG 152
             ++V L  +G + V DNGRGIPV  H       T+++++T LHAGGKF   +S Y +SG
Sbjct: 62  TQVDVRLFDDGSVEVADNGRGIPVAVH--ATGVPTVDVVMTQLHAGGKFGGKDSGYNVSG 119

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS  + V + R    +SQ + + +P     K+ +     GT I F  D
Sbjct: 120 GLHGVGVSVVNALSTRVEVDIKRDGYEWSQFYDKAVPGIL--KQGEATEATGTTIRFWAD 177

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY----------------- 255
           P IF     +D   + +  Q  A+L+  +      ++   ++                  
Sbjct: 178 PDIFET-TKYDFGTVARRIQEVAFLNKGLTINLVDERVKQDEVVDDVVSDTAEAPVAMTV 236

Query: 256 ----------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
                            F++PGGL  +++     ++ I   I     +  G     VE A
Sbjct: 237 EEKSTESSAPHKVRHRTFHYPGGLVDFVKHINRTKTPIQQSIIDFDGKGAGH---EVEVA 293

Query: 306 IAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDL 362
           + W       + ++ NTI T EGGTHE G R ALT  + KY   +     +  ++  DD+
Sbjct: 294 MQWNGGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLTGDDI 353

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
                 ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP++A  ++   
Sbjct: 354 REGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQRVCNEQLIHWFEANPVDAKAVVNKA 413

Query: 423 IERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
           I  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGGSAK  
Sbjct: 414 ISSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRSSELYVVEGDSAGGSAKSG 473

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541
           R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY K+++M
Sbjct: 474 RDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDISRLRYHKIVLM 533

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKI 600
            DADVDG HI++LLLT  ++ M  LIE  ++FL  PPL+++        +A+ +  +  +
Sbjct: 534 ADADVDGQHISTLLLTLLFRFMRPLIEHGYVFLAQPPLYKLKWQRMDPEFAYSDSERDGL 593

Query: 601 LE---EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           LE   +  K    +  I R+KGLGEM A +L ET MD + R L +V ++          +
Sbjct: 594 LETGLKLGKKINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADE 649

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
             + LMG   D R  FI   A  +  + 
Sbjct: 650 LFSILMGEDVDARRSFITRNAKDVRFLD 677


>gi|257085132|ref|ZP_05579493.1| gram positive topoisomerase IV [Enterococcus faecalis Fly1]
 gi|256993162|gb|EEU80464.1| gram positive topoisomerase IV [Enterococcus faecalis Fly1]
          Length = 663

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 233/635 (36%), Positives = 345/635 (54%), Gaps = 33/635 (5%)

Query: 59  RMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPV 118
           R RPGMYIG TD + LHHL  E++DNA+DE ++GY N I V++  +  + V D+GRG+P 
Sbjct: 2   RKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGNEINVTIQKDNSICVADSGRGMPT 61

Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178
             H       T+E+I T LHAGGKF    Y+ SGGLHGVG SVVNALS  L V + R   
Sbjct: 62  GMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSKWLEVHIVRDGV 119

Query: 179 IFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            + ++F  G  P+  L+K  K + + GT +TF PD  IF     F    L +  +  A+L
Sbjct: 120 EYMERFEDGGKPIGTLKKIGKTKKRNGTSVTFLPDDTIFSTTN-FSYEILAERLRESAFL 178

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
              VK   + ++        P++E F++  G+K ++    E +  ++  +      K+G 
Sbjct: 179 LKGVKITLTDER-----GEEPKEEVFHYEEGIKEFVAYLNEEKDTLTPVV-YFSGAKEGI 232

Query: 298 HRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               VE A  + +   E   S+ N + T +GGTHE G++ ++T+   +YA       ++ 
Sbjct: 233 ---EVELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKAYNEYARKVGLLKEKD 289

Query: 355 ISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
            ++   D       +LS+ + E   +F GQTK KL +  A+  V+N + +    YL +N 
Sbjct: 290 KNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLARTVVDNVVGEQMGFYLQENS 349

Query: 413 IEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLADCSQNIAHGTELFIV 469
             +  L+   I+  E R   RK RE +R    RK     L GKL           EL++V
Sbjct: 350 EMSQSLIRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLV 409

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           EGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I  N++I  ++  +G     ++ 
Sbjct: 410 EGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFS 469

Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG--TK 587
            ED  Y+K+IIMTDAD DGAHI  LLLTFFY+ M  LIE   +++  PPL+++++G   K
Sbjct: 470 IEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGTGKK 529

Query: 588 SV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645
           SV  YA  +    +++++  K       + R+KGLGEM A QL ET MD   RTL+RV I
Sbjct: 530 SVIEYAWTDGELAEVIDKVGK----GYMLQRYKGLGEMNAEQLWETTMDPETRTLIRVRI 585

Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           +         +  +  LMG K + R K+I++   F
Sbjct: 586 DD----AAQAERRVTTLMGDKVEPRRKWIEQHVQF 616


>gi|126651999|ref|ZP_01724191.1| DNA gyrase subunit B [Bacillus sp. B14905]
 gi|126591268|gb|EAZ85377.1| DNA gyrase subunit B [Bacillus sp. B14905]
          Length = 644

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 254/648 (39%), Positives = 375/648 (57%), Gaps = 22/648 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y+A  I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AG+   I+V++
Sbjct: 14  QAYEADQIQVLEGLEAVRKRPGMYIGSTSSKGLHHLVWEIVDNSIDEALAGFCTDIQVTI 73

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           +   ++ V DNGRGIPV    K   K  +E+I+T LHAGGKF    Y++SGGLHGVG SV
Sbjct: 74  EKENWIRVEDNGRGIPVSIQEKM-GKPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASV 132

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS E  V V R+  I   KF RG  +  L+      ++ GT   F+ DP+IF +   
Sbjct: 133 VNALSVETIVQVHREGHIHEIKFQRGKTIQELKIIGDT-DRNGTTTRFKADPEIFKETTV 191

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L    +  AYL+  ++   + ++E  E+        +++ GG+++Y++   +++ 
Sbjct: 192 YEYDILAHRIRELAYLNRGIRITIADEREGEERSTT-----YHYEGGIRSYVEHLNQSKE 246

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340
            I   I     EK G    +VE A+ +         S+ N I T EGGTHESG + ALTR
Sbjct: 247 PIHDPIDVL-GEKDGI---SVEIAMQYNAGFSSNIFSFANNINTYEGGTHESGFKTALTR 302

Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  YA      +    ++  +D+      I+SV   +P+F GQTKTKL + +  +    
Sbjct: 303 VINDYARKGGLLKEADANLTGEDVREGLTAIVSVKHPDPQFEGQTKTKLGNSEVSQITNA 362

Query: 399 ALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
              D F+ ++++NP  A K++E  ++        ++ +    RK A+    LPGKLADCS
Sbjct: 363 LFSDGFERFMLENPTVARKVVEKGLMAARARVAAKKAREFTRRKNALEVSSLPGKLADCS 422

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                  E++IVEGDSAGGSAK  R+R  QA+LPLRGKILNV  A  +KI +N +I  ++
Sbjct: 423 STNPADCEIYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDKILSNAEIRAMI 482

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A G     ++  E  RY K+IIMTDADVDGAHI +LLLTFF++ +  LIE  ++++  P
Sbjct: 483 TAFGTGIGEEFNLEKARYHKIIIMTDADVDGAHIRTLLLTFFFRFLRPLIEAGYIYIAQP 542

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+++ QG    Y +D+E  ++ILE   K    K  + R+KGLGEM A QL +T MD   
Sbjct: 543 PLYQVKQGKHVEYCYDDETLKEILERLPK--MPKPNVQRYKGLGEMNAEQLWDTTMDPEH 600

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           RTLL+VE++  +        +  +LMG + + R +FI+E A +  ++ 
Sbjct: 601 RTLLQVELDDAIK----ANQAFERLMGDEVEPRRQFIEENAVYA-NLD 643


>gi|18414465|ref|NP_568133.1| DNA topoisomerase, ATP-hydrolyzing, putative / DNA topoisomerase
           II, putative / DNA gyrase, putative [Arabidopsis
           thaliana]
 gi|75165162|sp|Q94BZ7|GYRBM_ARATH RecName: Full=DNA gyrase subunit B, mitochondrial; Flags: Precursor
 gi|14517374|gb|AAK62578.1| AT3g10270/F14P13_13 [Arabidopsis thaliana]
 gi|22655426|gb|AAM98305.1| At3g10270/F14P13_13 [Arabidopsis thaliana]
 gi|332003319|gb|AED90702.1| DNA gyrase subunit B [Arabidopsis thaliana]
          Length = 732

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 248/690 (35%), Positives = 389/690 (56%), Gaps = 27/690 (3%)

Query: 9   FSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGG 68
           F      SQ   ++   S     + A    + S  Y +  I++LEGL+PVR RPGMYIG 
Sbjct: 56  FQLTSVLSQRLIQRNAISSRFLSTEASQETTTSKGYSSEQIQVLEGLDPVRKRPGMYIGS 115

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T  + LHHL  E++DNA+DE  AGYA+ ++V L  +G ++VVDNGRGIP + HP    KS
Sbjct: 116 TGSRGLHHLVYEILDNAIDEAQAGYASKVDVVLHADGSVSVVDNGRGIPTDLHP-ATKKS 174

Query: 129 TLEIILTTLHAGGKFDNST--YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           +LE +LT LHAGGKF  ++  Y +SGGLHGVG+SVVNALS+ L V+V R      Q +SR
Sbjct: 175 SLETVLTVLHAGGKFGGTSSGYSVSGGLHGVGLSVVNALSEALEVSVWRDGMEHKQNYSR 234

Query: 187 GIPLSPLEKKE---KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           G P++ L  +    + +  +GT I F PD ++F     FD   +    +  A+L+ +V  
Sbjct: 235 GKPITTLTCRVLPLESKGTKGTSIRFWPDKEVFTTAIEFDHNTIAGRIRELAFLNPKVTI 294

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
               + +  EK    +  E+ F GGL  Y+     +++ I   +      ++  +  TV+
Sbjct: 295 SLKKEDDDPEKT---QYSEYSFAGGLTEYVSWLNTDKNPIHDVLGF----RREINGATVD 347

Query: 304 WAIAWCE--ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359
            A+ WC    +  +  Y N+I T +GGTH  G++ +LTR +   A+ ++   ++ IS+  
Sbjct: 348 VALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNTLAKKSKTVKEKDISLSG 407

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           + +      I+SV +  PEF GQTKT+L + + ++ V+ ++++    +L  +P     ++
Sbjct: 408 EHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEFLELHPDILESII 467

Query: 420 EWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
              +         +R +  V  K+ ++   LPGKLADCS      +E+FIVEGDSAGGSA
Sbjct: 468 SKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPEVSEIFIVEGDSAGGSA 527

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR-SQYREEDLRYEK 537
           KQ R+R  QA+LPLRGKILN+       +  N++I +L+  LG   +   +++E+LRY K
Sbjct: 528 KQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKENLRYHK 587

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           +II+TDADVDGAHI +LLLTFF++    L +   +++  PPLF++ +G  + Y +D+   
Sbjct: 588 IIILTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKNAQYCYDDADL 647

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           +KI   F  +      I RFKGLGEM+  QL ET M+   R L ++ ++     + +   
Sbjct: 648 KKITSNFPAN--ASYNIQRFKGLGEMMPEQLWETTMNPETRILKQLVVDD----IAEANM 701

Query: 658 SINKLMGTKADERFKFIQERAS--FIDDVG 685
           + + LMG + D R + I+  A+   +  + 
Sbjct: 702 TFSSLMGARVDVRKELIKNAATRINLQRLD 731


>gi|42519096|ref|NP_965026.1| DNA topoisomerase IV subunit B [Lactobacillus johnsonii NCC 533]
 gi|41583383|gb|AAS08992.1| topoisomerase IV subunit B [Lactobacillus johnsonii NCC 533]
          Length = 652

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 246/659 (37%), Positives = 362/659 (54%), Gaps = 34/659 (5%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A AN++ S +YD SSI+IL GLE VR RPGMYIG TD   L+HL  E++DN++DE +AGY
Sbjct: 2   AKANKTTS-SYDDSSIQILHGLEAVRKRPGMYIGSTDRHGLNHLIYEIVDNSVDEAMAGY 60

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
              I V++  +  +TV D GRG+P   H       T+E+ILT LHAGGKF    Y+ SGG
Sbjct: 61  GKEINVTIHKDNSVTVQDFGRGMPTGMHE--SGIPTIEVILTVLHAGGKFTEKNYQTSGG 118

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPD 212
           LHGVG SVVNALS  L V V R    + ++F   G P+  L+   K ++K GT ITF+PD
Sbjct: 119 LHGVGSSVVNALSSYLKVRVVRDGQAYEEEFENGGHPIGTLKHLGKTKDKNGTTITFKPD 178

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P IF     ++   + +  +  A+L   VK   + ++E          +EF +  G+K++
Sbjct: 179 PTIFST-TTYNYETIQERIRESAFLLKGVKFTLTDEREPE------HHDEFLYEDGIKSF 231

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHE 331
           +    E++  +  ++F    ++ G     VE++  + +   E   S+ N + T +GG+HE
Sbjct: 232 VSYLNEDKDTMG-DVFYFSGKQNGI---EVEFSGQYNDGYSENFVSFVNNVRTADGGSHE 287

Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREP--EFAGQTKTKL 387
           +G R   T+    YA+     +         D       +LSV I E   EF GQTK KL
Sbjct: 288 AGARSGFTKAFNDYAKKQGLLKNKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKL 347

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--R 445
            +  A+  V++ + +   +YL++N   A  L++   +  + R   +K R+ +R      +
Sbjct: 348 GTPQARSVVDSIVYEQLSYYLMENGEFAQSLVQKAQKARDAREAAKKARDESRSGKKRRK 407

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
           K  L GKL           ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  +
Sbjct: 408 KEILSGKLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQ 467

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
            I  N++I  ++  +G    S ++ +D  Y+K+IIMTDAD DGAHI  LLLTFFY+ M  
Sbjct: 468 DIFKNEEINTMIHTIGAGVGSDFQIKDANYDKIIIMTDADTDGAHIQILLLTFFYRYMRP 527

Query: 566 LIEQKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
           ++E   +++  PPL+++ +G     K  YA  +E   +  ++  K       + RFKGLG
Sbjct: 528 MVEAGRVYIALPPLYKLQKGNGAKAKIKYAWTDEELSEDSKDMGK----GFALQRFKGLG 583

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           EM A QL ET M+   RTL+RV+I+      +  +  +  LMG K   R K+I E   F
Sbjct: 584 EMNADQLWETTMNPETRTLIRVKIDD----AQLAEKRVTTLMGDKVAPRRKWIDENVKF 638


>gi|326383914|ref|ZP_08205598.1| DNA gyrase subunit B [Gordonia neofelifaecis NRRL B-59395]
 gi|326197373|gb|EGD54563.1| DNA gyrase subunit B [Gordonia neofelifaecis NRRL B-59395]
          Length = 684

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 244/694 (35%), Positives = 373/694 (53%), Gaps = 46/694 (6%)

Query: 26  SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNA 85
           +    ++P  + +S    Y A SI ILEGLE VR RPGMYIG T E+ LHHL  EV+DN+
Sbjct: 2   ADTSGNAPKKSGKSKPSEYGADSISILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNS 61

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AGYA  ++V+L  +G + VVD+GRG+PV  H        +E+I+T LHAGGKFD+
Sbjct: 62  VDEAMAGYATRVDVTLLADGGIRVVDDGRGMPVGMH--ATGVPAVEVIMTQLHAGGKFDS 119

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
            +Y +SGGLHGVGISVVNALS ++ + + R  +++ Q ++   P   LE   +  +  GT
Sbjct: 120 DSYAVSGGLHGVGISVVNALSTKVDLEIKRNGSVWRQTYNNAEPTPLLE--GEAASGTGT 177

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG--------- 256
            ++F  DPKIF     ++   + +  Q  A+L+  +    + ++                
Sbjct: 178 SVSFWADPKIFET-TEYNIETIARRLQEMAFLNKGLTITLTDERVHEAVLEAEVEESEDG 236

Query: 257 ---------------IPEKEEFYFPGGLKTYLQT-KLENRSLISSEIFTGKTEKKGTHRG 300
                            +   +++P GL  Y++     +++ I   +     + +G    
Sbjct: 237 DASIKTEEQKATAIAKVKTRTYHYPDGLIDYIKHLNSRSKAPIHKTVVGFTAKGEGH--- 293

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISI 357
            VE A+ W E     + ++ NTI T EGGTHE G R ALT  + +YA   +   ++   +
Sbjct: 294 EVEIAMQWNEGYAESVHTFANTINTAEGGTHEEGFRAALTSTVNRYAVDKKLIKEKDGKL 353

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      ++SV + +P+F GQTKTKL + + +  V+    +    +   NP EA  
Sbjct: 354 SGDDIREGLAAVISVKVADPQFEGQTKTKLGNTEVKSFVQKTCNEHLAMWFDANPAEAKT 413

Query: 418 LLEWVIERSE-ERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           +++   +  +     RR +  V RKTA     LPGKLADC  N     E++IVEGDSAGG
Sbjct: 414 IIKKAADSQQARLAARRARELVRRKTATDIGGLPGKLADCRSNDPSKCEVYIVEGDSAGG 473

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY 
Sbjct: 474 SAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDIAKLRYH 533

Query: 537 KVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT--QGTKSVYAHDE 594
           K+++M DADVDG HIA+LLLT  ++ M  LIEQ H++L  PPL+++   +G +  +A+++
Sbjct: 534 KIVLMADADVDGQHIATLLLTLLFRFMRPLIEQGHVYLAMPPLYKLKWQKGQEPEFAYND 593

Query: 595 EHKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651
             +  +LE  K  GK       I R+KGLGEM AS+L ET MD + R L +V ++     
Sbjct: 594 RERDALLEAGKAAGKKINTDDGIQRYKGLGEMNASELWETTMDPDVRVLKQVTLDD---- 649

Query: 652 LKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
                +  + LMG     R  FI   A  +  + 
Sbjct: 650 AAAADELFSILMGEDVVARRTFIARNAKDVRFLD 683


>gi|183602673|ref|ZP_02964037.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis HN019]
 gi|219682504|ref|YP_002468887.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis AD011]
 gi|241190071|ref|YP_002967465.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241195477|ref|YP_002969032.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|183218091|gb|EDT88738.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis HN019]
 gi|219620154|gb|ACL28311.1| DNA gyrase, B subunit [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240248463|gb|ACS45403.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250031|gb|ACS46970.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|289177774|gb|ADC85020.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295793058|gb|ADG32593.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis V9]
          Length = 705

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 257/711 (36%), Positives = 379/711 (53%), Gaps = 31/711 (4%)

Query: 1   MTDDSIDLFSTL--PPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPV 58
           M D   D  +       +    + L+ +G   +     +  + ++YDAS +R+LEGLE V
Sbjct: 1   MADQPTDSAAESLESASNDPIDQNLEANGTDQNDEQLDDTLSPEHYDASDLRVLEGLEAV 60

Query: 59  RMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPV 118
           R+RPGMYIG T  + LHHL  E++DN++DE +AGYA  IEV++  +  + VVD+GRGIPV
Sbjct: 61  RIRPGMYIGSTGPRGLHHLVYEIVDNSVDEALAGYATHIEVTILPDNGIRVVDDGRGIPV 120

Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178
           +  P    KS +E ++T LHAGGKF    Y +SGGLHGVGISVVNALS  + V V RQ  
Sbjct: 121 DEVP-GEGKSGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDVEVRRQGY 179

Query: 179 IFSQKFSRGIPLSPLEKKEKVRNK--RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAY 236
            ++Q +    P  PLE+   +R+    GT +TF  DPKIF     +D   L    Q  A+
Sbjct: 180 YWTQTYIDQHPTGPLERGRAMRDDESTGTSVTFWADPKIFETTI-YDFETLRSRFQQMAF 238

Query: 237 LSGRVKTCWSCDKEIAEKYGI------------PEKEEFYFPGGLKTYLQTKLENRSLIS 284
           L+  +K   +  +++ E                 +   + +  G+K Y+   +++R    
Sbjct: 239 LNKGLKITLTDMRQVDEARDEVAGDGDNTVEELHQTVTYQYKNGIKDYVAFLVKSRGSAP 298

Query: 285 SEIFTGKTEKKG-THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
            E      E +  T   + E A+ W       + ++ NTI T EGGTHE G R ALT  I
Sbjct: 299 IEPDVIDIESEDLTIGVSAEIAMQWTSAYSESVHTFANTIATTEGGTHEEGFRAALTSMI 358

Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
            +YA        +  ++  DD+      ++SV +  P+F GQTKTKL + +A+  V+  +
Sbjct: 359 NRYARDKNILKDKDDNLSGDDVREGLTAVISVKLTNPQFEGQTKTKLGNSEAKTFVQRVM 418

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQN 459
            +    +L  +P EA  +++  +E S  RL  +K RE  R+ +I     +P KL DC  N
Sbjct: 419 NEKLGDWLDAHPNEAKNIIQKALEASRARLAAKKARENTRRKSIFESAGMPDKLKDCQSN 478

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
                ELFIVEGDSAGGSA Q RN   QA+LPLRGKILN   A  +++  +  I  L+ A
Sbjct: 479 DPSECELFIVEGDSAGGSAIQGRNPLTQAILPLRGKILNTERASLDRMLKSDTIESLITA 538

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           +G      +  + +RY KVIIM DADVDGAHIA+L LT F++ M  +I   ++++  PPL
Sbjct: 539 IGGGYGEDFDLDKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPL 598

Query: 580 FRITQGTKSV-YAHDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDA 635
           +R+        + + +  + ++L E K +G+       I R+KGLGEM   +L ET MD 
Sbjct: 599 YRLKWTKGPHDFVYTDAERDRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDP 658

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           + R L +V I   L       ++ + LMG + + R  FIQ  A     +  
Sbjct: 659 DHRILKQVHIEDAL----QADETFSMLMGDEVEPRRLFIQRNAHNARWIDA 705


>gi|260583815|ref|ZP_05851563.1| DNA topoisomerase IV, B subunit [Granulicatella elegans ATCC
           700633]
 gi|260158441|gb|EEW93509.1| DNA topoisomerase IV, B subunit [Granulicatella elegans ATCC
           700633]
          Length = 682

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 239/656 (36%), Positives = 358/656 (54%), Gaps = 35/656 (5%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
              ++ Y+  SI++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DE ++GYA+ I
Sbjct: 2   SKVTNQYNDDSIQVLEGLEAVRKRPGMYIGSTDHRGLHHLAYEIVDNAVDEALSGYASKI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V++  +G L+V DNGRG+P   H       T+++I T LHAGGKF    Y+ SGGLHGV
Sbjct: 62  DVTIHKDGSLSVRDNGRGMPTGKH--ASGIPTIQVIFTVLHAGGKFGQGGYKTSGGLHGV 119

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           G SVVNALSD L V V R   +++Q F  G   +S ++K++  R   GT + F P   IF
Sbjct: 120 GASVVNALSDWLEVEVLRDGVLYTQTFKTGGEKVSSIKKEKTNRKGSGTTVRFLPSKHIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                +    L +  +  A+L   +    + ++           +EF +  G++ ++Q  
Sbjct: 180 STIV-WSYETLAERLRESAFLLKGLTITLTDER-------TDTSDEFCYEEGIRNFIQYL 231

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            E +  +S  +    T          E+A  + +     I S+ N + T +GGTHE G++
Sbjct: 232 NEEKDTLSPIVDFNST----IDGVETEFAFQYNDGYSETILSFVNNVRTKDGGTHEVGMK 287

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLD 391
            ALT+   +YA       ++  ++   D+      I+S+ + E   +F GQTK KL +  
Sbjct: 288 TALTKAFNEYARKVGLLKEKDKNLEGSDVREGLTAIVSLRVPEEILQFEGQTKDKLGTPA 347

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LR 448
           A+  V+N + +    +L +N   A +L+   ++  E R   RK RE +R     K     
Sbjct: 348 ARSIVDNTIFEHLGIFLTENGEIAQELIRKALKAREAREASRKAREESRNGKKGKKKETL 407

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           L GKL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A    I 
Sbjct: 408 LSGKLTPAQGKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKASLSDIL 467

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            N++I  ++  +G    + +  ED  Y+K++IMTDAD DGAHI  LLLTFFY+ M  LIE
Sbjct: 468 KNEEINTIIYTIGAGVGNDFNIEDCNYDKIVIMTDADTDGAHIQVLLLTFFYRYMKPLIE 527

Query: 569 QKHLFLISPPLFRITQG--TK--SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
              ++L  PPLF+I++G   K    YA  E+  ++ +++  K       + R+KGLGEM 
Sbjct: 528 AGKVYLALPPLFKISKGTGKKQVVEYAWTEKELEEKIKKVGK----GYLLQRYKGLGEMN 583

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           A QL ET M+ + RTL+RV I+         +  ++ LMG K + R K+I+    F
Sbjct: 584 ADQLWETTMNPDTRTLIRVVIDD----KAQAERRVSTLMGNKVEPRRKWIESHVEF 635


>gi|283457093|ref|YP_003361656.1| type IIA topoisomerase, B subunit [Rothia mucilaginosa DY-18]
 gi|283133071|dbj|BAI63836.1| type IIA topoisomerase, B subunit [Rothia mucilaginosa DY-18]
          Length = 713

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 247/682 (36%), Positives = 360/682 (52%), Gaps = 37/682 (5%)

Query: 35  FANQSASDN---YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
            + Q+AS+    Y AS I +LEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +A
Sbjct: 37  ASEQNASEQQHEYGASDITVLEGLEAVRKRPGMYIGSTTERGLHHLVYEVVDNSVDEALA 96

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           GYA+ I+V++  +G + V D+GRGIPV+ HP   +KST+E+++T LHAGGKF    Y +S
Sbjct: 97  GYASKIDVTIQADGAVRVEDDGRGIPVDEHP-TEHKSTVEVVMTVLHAGGKFGGGGYSVS 155

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVGISVVNALS  +   V RQ   +   FS G       +K +  +K GT  TF P
Sbjct: 156 GGLHGVGISVVNALSTRVITEVHRQGYAWHISFSNGGVPDGPLRKGEPSDKTGTIQTFYP 215

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI-------------------- 251
           DP+IF     FD   L    Q  A+L+  +    + ++E                     
Sbjct: 216 DPEIFET-VEFDFETLRARFQQMAFLNKGLTITLTDEREKFVGDEVAEESEKKENILNRV 274

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
                      + +  GL  Y+         I +E       +      ++E A+ W   
Sbjct: 275 HANAEGFTTVTYRYDNGLFDYVHFLNAGAKTIVNEEIVSFEAEDTERNMSLEVAMQWTGA 334

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVG 368
               + SY NTI T EGGTHE G R ALT  + +YA   +    +  ++  +D+      
Sbjct: 335 YKESVYSYANTINTHEGGTHEEGFRAALTSLVNRYARENKLLRDKDDNLTGEDVREGLTA 394

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           ++S+ I EP+F GQTKTKL + +A+   +  + D    +  +NP  A  ++   I  ++ 
Sbjct: 395 VISIKISEPQFEGQTKTKLGNSEAKSFTQREVNDHLGDWFGRNPAVAKDIVRRAITAAQA 454

Query: 429 RLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
           R+  RK RE  R+   +    +PGKL DCS      +E+++VEGDSAGGSA Q R+ + Q
Sbjct: 455 RIAARKARETTRRKGLLETSSMPGKLKDCSSKDPSISEIYLVEGDSAGGSAVQGRDPNTQ 514

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVD 547
           A+LPLRGKILNV  A  ++  +N +I  ++ A G      +  E  RY K+++M DADVD
Sbjct: 515 AILPLRGKILNVERARLDRALSNAEIQAMITAFGTGIGDDFDIEKARYHKIVLMADADVD 574

Query: 548 GAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKK 606
           G HI +LLLT  ++ M  LIE  +++L  PPL+RI        Y + +  + + L     
Sbjct: 575 GQHITTLLLTLLFRFMRPLIEAGYVYLAQPPLYRIKWSNAPHDYVYSDAERDEALARGAA 634

Query: 607 HGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLM 663
                 +   I R+KGLGEM  ++L +T MD  +RTLL+V++              + LM
Sbjct: 635 KNLRLPKDNGIQRYKGLGEMDYTELWDTTMDPARRTLLQVKMED----AAAADQIFSVLM 690

Query: 664 GTKADERFKFIQERASFIDDVG 685
           G   + R +FIQ+ A  I  + 
Sbjct: 691 GEDVEARREFIQQNAKDIRFLD 712


>gi|296392546|ref|YP_003657430.1| DNA gyrase subunit B [Segniliparus rotundus DSM 44985]
 gi|296179693|gb|ADG96599.1| DNA gyrase, B subunit [Segniliparus rotundus DSM 44985]
          Length = 673

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 244/683 (35%), Positives = 364/683 (53%), Gaps = 43/683 (6%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           +    +   +Y ASSI ILEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +AGY
Sbjct: 2   SEKKNADKSSYGASSITILEGLEAVRKRPGMYIGSTGERGLHHLVQEVVDNSVDEAMAGY 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A  ++V+L  +G + VVD+GRGIPV  H       T+E++LT LHAGGKFD+ +Y +SGG
Sbjct: 62  ATRVDVTLLADGGVEVVDDGRGIPVAPH--ASGPPTVEVVLTVLHAGGKFDSDSYAVSGG 119

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVGISVVNALS +L V +      +SQ + +  P    +       + GT + F  DP
Sbjct: 120 LHGVGISVVNALSYKLEVEIDVDGFHWSQSYDKAKPGPLTK--GDPVKRTGTTVRFWADP 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP--------------- 258
           +IF     +D   + +  Q  A+L+  +    +  +E                       
Sbjct: 178 EIFETTH-YDFDTIARRLQEMAFLNKGLIITLTDLREGQIDAAEDGEALDTAEVARSEQE 236

Query: 259 --------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   ++ E+++PGGL  Y+      ++ + + I + + + +G     VE A+ W  
Sbjct: 237 AQAQAPAVKRREYHYPGGLHDYVGHINRTKTAVHNSIVSFEGKGEGH---EVEIAMQWNS 293

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                + ++ NTI T EGGTHE G R ALT  + KYA   +   ++  ++  DD+     
Sbjct: 294 GYTESVYTFANTINTHEGGTHEEGFRAALTSTMNKYARDKKILKEKDKNLTGDDVREGLA 353

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP EA  ++    +   
Sbjct: 354 AVISVKLGEPQFEGQTKTKLGNTEIRSFVQKICNEELTHWFEANPSEAKLIVTKAQQAYL 413

Query: 428 ERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   R  RE   RKTA     LPGKLADC       +E++IVEGDSAGGSAK  RN   
Sbjct: 414 AREAARSARETVRRKTATDIGGLPGKLADCRSKDPSKSEVYIVEGDSAGGSAKSGRNSEF 473

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADV 546
           QA+LP+RGKI+NV  A  +++  N ++  ++ A G     ++    LRY K+++M DADV
Sbjct: 474 QAILPIRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDLAKLRYHKIVLMADADV 533

Query: 547 DGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFK 605
           DG HI++LLLT  ++ M  L+E  H++L +PPL+++     +  YA+ +  +  ++E   
Sbjct: 534 DGQHISTLLLTLLFRFMRPLVEHGHVYLAAPPLYKLKWQRAEPEYAYSDRERDALIEAGL 593

Query: 606 KHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKL 662
             GK       + R+KGLGEM A +L ET MD + RTL  V ++          +  + L
Sbjct: 594 SAGKRINKDDGVQRYKGLGEMNAKELWETTMDPDTRTLRLVTMDD----AAAADELFSIL 649

Query: 663 MGTKADERFKFIQERASFIDDVG 685
           MG     R  FI   A  +  + 
Sbjct: 650 MGEDVPARRGFIARNARDVRFLD 672


>gi|164510805|emb|CAK18885.1| topoisomerase II subunit B [Staphylococcus pseudintermedius]
          Length = 611

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 235/626 (37%), Positives = 360/626 (57%), Gaps = 20/626 (3%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIG T E+ LHHL  E++DN++DE +AGYA+ IEV ++ + ++ V DNGRGIPV+   K
Sbjct: 1   MYIGSTSERGLHHLVWEIVDNSIDEALAGYADNIEVVIEKDNWIKVTDNGRGIPVDIQEK 60

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
              +  +E+ILT LHAGGKF    Y++SGGLHGVG SVVNALSD L V V R   I  Q 
Sbjct: 61  M-GRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSDTLEVYVHRDGRIHHQA 119

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           + +G+P   L++     ++ GT I F+ D  IF +   ++   L K  +  A+L+  ++ 
Sbjct: 120 YHKGVPAFDLKQVGDT-DQTGTVIRFKADGTIFQETTVYNYETLQKRIRELAFLNKGIRI 178

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
             + +++         ++ +++ GG+K+Y++   EN+  +  E       +       VE
Sbjct: 179 TLTDERDEE----NVREDSYHYEGGIKSYVELINENKEPLHDEPIYVHQTRDDI---EVE 231

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISD 360
            A+ +       + +Y N I T EGGTHE G + ALTR +  Y   ++  +        +
Sbjct: 232 IALQYNSGFATNLLTYANNIHTYEGGTHEDGFKRALTRVLNNYGTQSKLIKEDKDRLSGE 291

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D       ++S+   +P+F GQTKTKL + + ++ V+    + F+ +L ++P  A  ++E
Sbjct: 292 DTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQIVDRVFSELFERFLYEHPQVARIIVE 351

Query: 421 WVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
             I  S  R+  +K RE   RK+A+    LPGKLADCS      +E+F+VEGDSAGGS K
Sbjct: 352 KGIMASRARIAAKKAREVTRRKSALDISSLPGKLADCSSKDPSESEIFLVEGDSAGGSTK 411

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
             R+   QA+LPLRGKILNV  A  +KI NN +I  +V A G     ++     RY K++
Sbjct: 412 SGRDSRTQAILPLRGKILNVEKARLDKILNNNEIRQMVTAFGTGIGGEFDISKARYHKIV 471

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599
           IMTDADVDGAHI +LLLTFFY+ M  LIE  ++++  PPL+++TQG +  Y  ++    K
Sbjct: 472 IMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRELDK 531

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
           + E+   +   K  I+R+KGLGEM A QL ET M+   R +L+V ++  +    +   + 
Sbjct: 532 LKEKL--NPTPKWSIARYKGLGEMNADQLWETTMNPENRAMLQVTLDDAI----EADQTF 585

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
             LMG   + R +FI++ A +  ++ 
Sbjct: 586 EMLMGDVVENRRQFIEDNAVYA-NLD 610


>gi|227510437|ref|ZP_03940486.1| DNA topoisomerase IV subunit B [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227513446|ref|ZP_03943495.1| DNA topoisomerase IV subunit B [Lactobacillus buchneri ATCC 11577]
 gi|227524588|ref|ZP_03954637.1| DNA topoisomerase IV subunit B [Lactobacillus hilgardii ATCC 8290]
 gi|227083319|gb|EEI18631.1| DNA topoisomerase IV subunit B [Lactobacillus buchneri ATCC 11577]
 gi|227088263|gb|EEI23575.1| DNA topoisomerase IV subunit B [Lactobacillus hilgardii ATCC 8290]
 gi|227190089|gb|EEI70156.1| DNA topoisomerase IV subunit B [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 682

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 249/663 (37%), Positives = 360/663 (54%), Gaps = 33/663 (4%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
              +         YD SSI+ILEGLE VR RPGMYIG TD + LHHL  E++DN +DEV+
Sbjct: 26  KKESQKMVKQKQKYDDSSIQILEGLEAVRKRPGMYIGSTDYRGLHHLVYEIVDNGVDEVL 85

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AGY ++I V++  +  +TVVD+GRG+PV  H     K T E+ILT LHAGGKF    Y+ 
Sbjct: 86  AGYGDMIRVTIHKDNSITVVDHGRGMPVGMH--ASGKPTPEVILTQLHAGGKFGQGGYKT 143

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITF 209
           SGGLHGVG SVVNALS  L VT+ R    + + F   G P+  L K  K +   GT ++F
Sbjct: 144 SGGLHGVGASVVNALSTWLKVTIVRDGYKYEEDFKDGGHPVGTLRKLGKTKEHTGTTVSF 203

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +PD  IF +   ++ + L +  +  A+L    K     ++   E     ++E F++  G+
Sbjct: 204 KPDSSIFTNTV-YNFSTLSERLRESAFLLKGTKIILIDERPGQE-----QEETFHYEDGI 257

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K ++Q   E++     ++      K G     VE A  + +     + S+ N + T +GG
Sbjct: 258 KEFVQYLNEDK-HTLGDVMYFDGTKDGV---EVEVAAQYNDGYSETMMSFVNNVRTKDGG 313

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTK 384
           THE+GLR A T+    YA        +  ++   D+      +LS+ I E   +F GQTK
Sbjct: 314 THEAGLRNAWTKAFNDYARKVGLLKDKDKNLEGSDVREGLSVVLSLRIPEEILQFEGQTK 373

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI 444
            KL + +A+  V+N + +   +YL++N   A  L+   +   + R   R+ R+  R    
Sbjct: 374 EKLGTPEARSIVDNVVSEKLGYYLMENGEFAQMLVHKALRARQARQAARRARDETRNGKR 433

Query: 445 RKLR---LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            K +   L GKL           ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   
Sbjct: 434 HKKQERLLSGKLTPAQSKDYSRNELFLVEGDSAGGSAKQGRDRRYQAILPLRGKVLNTER 493

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
           A   +I  N++I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI  LLLTFFY+
Sbjct: 494 AKLPEIMKNEEINTMIYTIGAGVGADFNIEDANYDKIIIMTDADDDGAHIQILLLTFFYK 553

Query: 562 EMYDLIEQKHLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
            M  +I++  +F+  PPL+++ +G     K  YA   E    + + F K       + RF
Sbjct: 554 YMRPMIDKGRVFIALPPLYKLQKGAGKKAKIQYAWTNEELDSVSKTFGK----GYSLQRF 609

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           KGLGEM A QL ET MD   RTL++V I+         +  +  LMG K + R K+I++ 
Sbjct: 610 KGLGEMNADQLWETTMDPATRTLIKVRIDD----AALAERRVTTLMGDKVEPRRKWIEQN 665

Query: 678 ASF 680
             F
Sbjct: 666 VKF 668


>gi|315605502|ref|ZP_07880539.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Actinomyces sp. oral
           taxon 180 str. F0310]
 gi|315312769|gb|EFU60849.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Actinomyces sp. oral
           taxon 180 str. F0310]
          Length = 697

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 242/678 (35%), Positives = 355/678 (52%), Gaps = 30/678 (4%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +          +Y AS I +LEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +A
Sbjct: 25  ADNENTAGGEQSYGASDITVLEGLEAVRKRPGMYIGSTGERGLHHLVYEVVDNSVDEALA 84

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           GYA+ IEV++  +G + VVDNGRGIPV+ HP   +K T+E+++T LHAGGKF    Y +S
Sbjct: 85  GYADHIEVTIQADGGIKVVDNGRGIPVDEHP-TEHKPTVEVVMTILHAGGKFGGGGYAVS 143

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVGISVVNALS  +   + RQ  ++   F+ G        + +  N+ GT   F P
Sbjct: 144 GGLHGVGISVVNALSTRVDTEIRRQGYVWRMSFANGGSPITELVRGEETNETGTTQVFYP 203

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA---------------EKYG 256
           DP IF     FD   L +  Q  A+L+  ++   + ++E A               ++  
Sbjct: 204 DPTIFET-VEFDFETLRQRFQQMAFLNKGLRITLTDEREFATDEGDEIAGEDKASGKEAA 262

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PE 314
                 + +  GL+ Y++     +   +        E +      +VE A+ W       
Sbjct: 263 THRTVSYCYEYGLRDYVEYLDSAKKTDTINNEIIDFEAENDEGTMSVEIAMQWTSAYSSS 322

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSV 372
           + ++ NTI T EGG HE G R ALT  + +Y         +  ++  DD+      ++S+
Sbjct: 323 VHTFANTINTTEGGMHEEGFRTALTSLVNRYGRDKGLIRDKDDNLTGDDVREGLTAVISI 382

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
            + EP+F GQTKTKL + +A+  V   +      +   +P +A  ++         R+  
Sbjct: 383 KLTEPQFEGQTKTKLGNTEARTFVAQQVYSKLTDWFDAHPADAKAIIAKGQAAQAARVAA 442

Query: 433 RKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           RK RE  R+   +    +PGKL DCS       E+FIVEGDSAGGSA   R+   QA+LP
Sbjct: 443 RKAREATRRKGVLESASMPGKLRDCSSRTPSECEIFIVEGDSAGGSAVGGRDPERQAILP 502

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHI 551
           +RGKILNV  A  ++  ++  I  L+ A G      +    LRY K++IM DADVDG HI
Sbjct: 503 IRGKILNVEKARLDRALSSDTIRSLITAFGTGIGEDFDISKLRYGKIVIMADADVDGQHI 562

Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ-GTKSVYAHDEEHKQKILEEFKKHGKG 610
           A+LLLT  ++ M  LIE  H F+  PPL+RI     +  +A+ ++ + ++LE     G+ 
Sbjct: 563 ATLLLTLLFRYMRPLIEGGHTFIAMPPLYRIKWTNAEHEFAYSDKERDQLLEAGATAGRR 622

Query: 611 KIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667
             +   I R+KGLGEM   +L ET MD   R L +V +++      D  ++   LMG   
Sbjct: 623 LPKEGGIQRYKGLGEMNDHELWETTMDPENRILKQVTLDE----AADADETFTILMGDDV 678

Query: 668 DERFKFIQERASFIDDVG 685
           D R  FIQ  A+ +  + 
Sbjct: 679 DRRRTFIQRNATDVRFLD 696


>gi|75288399|sp|Q5YLB4|GYRB_NICBE RecName: Full=DNA gyrase subunit B, chloroplastic/mitochondrial;
           Flags: Precursor
 gi|38017095|gb|AAR07943.1| DNA gyrase B subunit [Nicotiana benthamiana]
          Length = 731

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 238/670 (35%), Positives = 375/670 (55%), Gaps = 23/670 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86
                + AF   + S  Y +  I++LEGL+PVR RPGMYIG T  + LHHL  E++DNA+
Sbjct: 73  SSSTTTEAFQENTKSKGYGSEQIQVLEGLDPVRKRPGMYIGSTGPRGLHHLVYEILDNAV 132

Query: 87  DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA--GGKFD 144
           DE  AG+A  I+V L  +  +++ DNGRGIP E HP    KS+LE +LT LHA       
Sbjct: 133 DEAQAGFATKIDVVLHADNSVSIADNGRGIPTELHP-VTKKSSLETVLTVLHAGGKFGGS 191

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE---KVRN 201
           +S Y +SGGLHGVG+SVVNALS  L VT+ R    + QK+SRG P++ L   +   ++R+
Sbjct: 192 SSGYNVSGGLHGVGLSVVNALSQALEVTIWRDGKEYQQKYSRGKPITTLICHDLPVEMRD 251

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           ++GT I F PD ++F  +  FD   +    +  A+L+  +      +    EK    +  
Sbjct: 252 RQGTAIRFWPDKEVFTTEMQFDYNTIAGRIRELAFLNPELTIALKKEDIDPEKI---QCN 308

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
           E+++ GGL  Y++    ++  +   +   K     T    ++W       +  +  Y N+
Sbjct: 309 EYFYAGGLVEYVKWLNADKKPLHDVLGFRKEADGITIDMALQWCS--DAYSDTMLGYANS 366

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I T +GGTH  G++ ALTR +    + ++   ++ IS+  + +      ++SV +  PEF
Sbjct: 367 IRTIDGGTHIDGVKAALTRILNNLGKKSKTIKEKDISLSGEHVREGLTCVISVKVPNPEF 426

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREV 438
            GQTKT+L + + ++ V+ ++++    YL  +P     +L   +         +R +  V
Sbjct: 427 EGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLNALKAALAAKRARELV 486

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            +K+ ++   LPGKLADCS       E+FIVEGDSAGGSAKQ R+R  QA+LPLRGKILN
Sbjct: 487 RQKSVLKSSSLPGKLADCSATNPEEAEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILN 546

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLT 557
           +       +  N++I +L+  LG   + +  +++ LRY K+II+TDADVDGAHI +LLLT
Sbjct: 547 IERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLT 606

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
           FF++    L E+  +++  PPL+++ +G +  Y +D+   +K+   F  +      I RF
Sbjct: 607 FFFRYQRALFEEGCIYVGVPPLYKVERGKQVYYCYDDAELKKVQRSFPSN--ASYNIQRF 664

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           KGLGEM+ +QL ET M+   R L ++ +        +     + LMG++ D R + IQ  
Sbjct: 665 KGLGEMMPAQLWETTMNPETRLLKQLVVED----AAEANVVFSSLMGSRVDIRKQLIQNS 720

Query: 678 AS--FIDDVG 685
           AS   ++ + 
Sbjct: 721 ASMMNLEQLD 730


>gi|114327348|ref|YP_744505.1| DNA topoisomerase IV subunit B [Granulibacter bethesdensis CGDNIH1]
 gi|114315522|gb|ABI61582.1| DNA gyrase subunit B [Granulibacter bethesdensis CGDNIH1]
          Length = 677

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 347/692 (50%), Positives = 462/692 (66%), Gaps = 29/692 (4%)

Query: 6   IDLF--STLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPG 63
            DLF  +  PP SQ  +++  +                D+Y A  I +LEGLEPVR RPG
Sbjct: 2   NDLFGGAKSPPPSQRGAKQRTEMN-------------EDDYSAKDIEVLEGLEPVRRRPG 48

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIGGTDE ALHHL +E++DNAMDE +AG+A +I+++LD    +T+ DNGRGIP++ HPK
Sbjct: 49  MYIGGTDENALHHLVAEILDNAMDEAVAGHATVIDLTLDPGNTVTIRDNGRGIPIDPHPK 108

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
           F N S LE+ILTTLH+GGKF    Y  SGGLHGVG SVVNALS  + V VAR   ++ Q 
Sbjct: 109 FKNLSALEVILTTLHSGGKFAGKAYATSGGLHGVGSSVVNALSATMEVEVARNRVLWRQS 168

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           ++RG P++PL +     N+RGT+I F PD +IFG    F  ARL ++ +SKAYL   V+ 
Sbjct: 169 YARGKPMTPLIEVGAAPNRRGTQIRFTPDEEIFGRLN-FSPARLYRLCRSKAYLFRGVQI 227

Query: 244 CWSCDK---EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR- 299
            W CD    + + K  IP +   +FPGGL+  L   +   +L   +I++G+ + KG  + 
Sbjct: 228 RWKCDPSLLKNSGKEDIPAEATLHFPGGLRDSLADDIGETTLAIPQIWSGEADMKGDGQK 287

Query: 300 -----GTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR 353
                G VEWA+AW +  +  + SYCNT+ T  GGTHE G R AL +G++ + E   NKR
Sbjct: 288 ETQTGGRVEWALAWLDGADGFVHSYCNTVPTPLGGTHEQGFRAALLKGLRAWGEQRGNKR 347

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
           A +I ++D+M S    LS F+REP+F GQTK KL S +A R VE+A+RD FDH++  +P 
Sbjct: 348 AAAITAEDIMGSLAAKLSAFVREPQFQGQTKEKLTSPEAVRLVESAMRDRFDHFMAGDPA 407

Query: 414 EATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
            A  LL +VIER+EER+RRR+Q++  RK+A R+LRLPGKLADCS   A  TELF+VEGDS
Sbjct: 408 GADNLLAYVIERAEERIRRREQKDTPRKSATRRLRLPGKLADCSSENAAETELFLVEGDS 467

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAKQAR R NQAVLPLRGKILNVASA ++K+R NQ++ DL++ALGC    ++    L
Sbjct: 468 AGGSAKQARRRENQAVLPLRGKILNVASASADKLRQNQELKDLIEALGCGVGERFDIARL 527

Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHD 593
           RY +VIIMTDADVDGAHIASLL+TFFY+E+ +L+ + HL+L  PPL+R+TQG  S YA D
Sbjct: 528 RYGRVIIMTDADVDGAHIASLLMTFFYRELPELVRRGHLYLAQPPLYRLTQGATSRYAMD 587

Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
           +    ++++   K   GKIE+SRFKGLGEM  + LK+T MD  +R LL+V          
Sbjct: 588 DAELDRLMKSGFKK-TGKIEVSRFKGLGEMPPAILKDTTMDPARRVLLKV--LTPPEDRV 644

Query: 654 DTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            T + +  LMG K + RF+FIQ+ A    D+ 
Sbjct: 645 RTGELVESLMGKKPELRFQFIQDNAPRAGDLD 676


>gi|227889992|ref|ZP_04007797.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC
           33200]
 gi|227849436|gb|EEJ59522.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC
           33200]
          Length = 661

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 246/659 (37%), Positives = 362/659 (54%), Gaps = 34/659 (5%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A AN++ S +YD SSI+IL GLE VR RPGMYIG TD   L+HL  E++DN++DE +AGY
Sbjct: 11  AKANKTTS-SYDDSSIQILHGLEAVRKRPGMYIGSTDRHGLNHLIYEIVDNSVDEAMAGY 69

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
              I V++  +  +TV D GRG+P   H       T+E+ILT LHAGGKF    Y+ SGG
Sbjct: 70  GKEINVTIHKDNSVTVQDFGRGMPTGMHE--SGIPTIEVILTVLHAGGKFTEKNYQTSGG 127

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPD 212
           LHGVG SVVNALS  L V V R    + ++F   G P+  L+   K ++K GT ITF+PD
Sbjct: 128 LHGVGSSVVNALSSYLKVRVVRDGQAYEEEFENGGHPIGTLKHLGKTKDKNGTTITFKPD 187

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P IF     ++   + +  +  A+L   VK   + ++E          +EF +  G+K++
Sbjct: 188 PTIFST-TTYNYETIQERIRESAFLLKGVKFTLTDEREPE------HHDEFLYEDGIKSF 240

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHE 331
           +    E++  +  ++F    ++ G     VE++  + +   E   S+ N + T +GG+HE
Sbjct: 241 VSYLNEDKDTMG-DVFYFSGKQNGI---EVEFSGQYNDGYSENFVSFVNNVRTADGGSHE 296

Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREP--EFAGQTKTKL 387
           +G R   T+    YA+     +         D       +LSV I E   EF GQTK KL
Sbjct: 297 AGARSGFTKSFNDYAKKQGLLKNKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKL 356

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--R 445
            +  A+  V++ + +   +YL++N   A  L++   +  + R   +K R+ +R      +
Sbjct: 357 GTPQARSVVDSIVYEQLSYYLMENGEFAQSLVQKAQKARDAREAAKKARDESRSGKKRRK 416

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
           K  L GKL           ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  +
Sbjct: 417 KEILSGKLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQ 476

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
            I  N++I  ++  +G    S ++ +D  Y+K+IIMTDAD DGAHI  LLLTFFY+ M  
Sbjct: 477 DIFKNEEINTMIHTIGAGVGSDFQIKDANYDKIIIMTDADTDGAHIQILLLTFFYRYMRP 536

Query: 566 LIEQKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
           ++E   +++  PPL+++ +G     K  YA  +E   +  ++  K       + RFKGLG
Sbjct: 537 MVEAGRVYIALPPLYKLQKGNGAKAKIKYAWTDEELSEDSKDMGK----GFALQRFKGLG 592

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           EM A QL ET M+   RTL+RV+I+      +  +  +  LMG K   R K+I E   F
Sbjct: 593 EMNADQLWETTMNPETRTLIRVKIDD----AQLAEKRVTTLMGDKVAPRRKWIDENVKF 647


>gi|300361706|ref|ZP_07057883.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
           gasseri JV-V03]
 gi|300354325|gb|EFJ70196.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
           gasseri JV-V03]
          Length = 661

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 241/658 (36%), Positives = 355/658 (53%), Gaps = 33/658 (5%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
                 + +YD SSI+IL GLE VR RPGMYIG TD   L+ L  E++DN++DE +AGY 
Sbjct: 11  AKTNKTTSSYDDSSIQILHGLEAVRKRPGMYIGSTDRHGLNQLVYEIVDNSVDEAMAGYG 70

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             I V++  +  +TV D GRG+P   H       T+E+ILT LHAGGKF    Y+ SGGL
Sbjct: 71  KEINVTIHKDNSVTVQDFGRGMPTGMH--ASGIPTIEVILTVLHAGGKFTEKNYQTSGGL 128

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDP 213
           HGVG SVVNALS  L V V R    + ++F   G P+  L+   K ++K GT ITF+PD 
Sbjct: 129 HGVGSSVVNALSSYLKVRVVRNGQAYEEEFENGGHPIGTLKHLGKTKDKNGTTITFKPDA 188

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF     ++   + +  +  A+L   VK   + ++E          +EF +  G+K+++
Sbjct: 189 TIFST-TTYNYETIQERIRESAFLLKGVKFTLTDEREPE------HHDEFLYEDGIKSFV 241

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHES 332
               E++  +  ++F    ++ G     VE+A  + +   E   S+ N + T +GG+HE+
Sbjct: 242 SYLNEDKDTMG-DVFYFSGQQNGI---EVEFAGQYNDGYSENFVSFVNNVRTADGGSHEA 297

Query: 333 GLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREP--EFAGQTKTKLV 388
           G R   T+    YA+     +         D       +LSV I E   EF GQTK KL 
Sbjct: 298 GARSGFTKAFNDYAKKQGLLKNKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLG 357

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RK 446
           +  A+  V++ + +   +YL++N   A  L++   +  + R   +K R+ +R      +K
Sbjct: 358 TPQARSVVDSIVYEQLSYYLMENGEFAQSLVQKAQKARDAREAAKKARDESRSGKKRRKK 417

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             L GKL           ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + 
Sbjct: 418 EILSGKLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQD 477

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           I  N++I  ++  +G    S ++ +D  Y+K+IIMTDAD DGAHI  LLLTFFY+ M  +
Sbjct: 478 IFKNEEINTMIHTIGAGVGSDFQIKDANYDKIIIMTDADTDGAHIQILLLTFFYRYMRPM 537

Query: 567 IEQKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
           +E   +++  PPL+++ +G     K  YA  +E   +  ++  K       + RFKGLGE
Sbjct: 538 VEAGRVYIALPPLYKLQKGNGAKAKIKYAWTDEELNEDSKDMGK----GFALQRFKGLGE 593

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           M A QL ET M+   RTL+RV+I+      +  +  +  LMG K   R K+I E   F
Sbjct: 594 MNADQLWETTMNPETRTLIRVKIDD----AQLAEKRVTTLMGDKVAPRRKWIDENVKF 647


>gi|83319442|ref|YP_424431.1| DNA topoisomerase IV, B subunit [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|90110022|sp|P50028|GYRB_MYCCT RecName: Full=DNA gyrase subunit B
 gi|83283328|gb|ABC01260.1| DNA topoisomerase IV, B subunit [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 643

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 243/646 (37%), Positives = 350/646 (54%), Gaps = 28/646 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             YD S+I++LEGLE VR RPGMYIG TD K LHHL  E++DNA+DE +AGY   I+V L
Sbjct: 5   KKYDESAIQVLEGLEAVRKRPGMYIGSTDNKGLHHLVWEIVDNAIDEALAGYCTQIDVIL 64

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +  +TV+DNGRGIP   H     K T E+I + LHAGGKFD++ Y+ SGGLHGVG SV
Sbjct: 65  EKDNSITVIDNGRGIPTGMHK--TGKPTPEVIFSVLHAGGKFDSTAYKSSGGLHGVGSSV 122

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
            NALS      + R   I   +F  G  L           K GT I F PD  IF + A 
Sbjct: 123 TNALSKRFKAIIYRDKKIHEIEFKNGGKLEKPLTFINTTYKTGTTINFLPDDTIFSN-AK 181

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F+ + + +  +  A L+  +K   S               E+ F  GL  +++  +++++
Sbjct: 182 FNFSLISERLKESALLNSGLKITLSD-------LISNRYVEYQFQDGLVEFVKELVDDKT 234

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
            ++  I      K       +++     ++N  I  + N + T +GGTH  G +  L R 
Sbjct: 235 PVTDIITINNESKNIIVEIALQYTE---DDNEIILGFANNVKTIDGGTHLVGFKSGLIRA 291

Query: 342 IKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVEN 398
           I  YA+  +  K    + S+DL    V I++V I E   E+ GQTK+KL + DA+  VE 
Sbjct: 292 INDYAKDQKILKDKTKLDSNDLREGLVAIVTVKIPENLIEYEGQTKSKLGTSDAKTVVEQ 351

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP---GKLAD 455
            + +   ++L++N + A K++E  +   + R+  ++ R+  +    +K       GKL  
Sbjct: 352 IVYEFMSYWLIENKVLANKVIENALNAQKARIAAKQARQAIKSVKGKKNVNKLMLGKLTP 411

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
                    EL++VEGDSAGGSAK  R+R+ QA+LPLRGK++N   A    +  N++I  
Sbjct: 412 AQGKKRELNELYLVEGDSAGGSAKSGRDRNFQAILPLRGKVINSEKAKLVDLLKNEEIQS 471

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ A+G      +   D+ Y K+IIMTDAD DGAHI +LLLTFFY+ M DLI  K +++ 
Sbjct: 472 IINAIGAGVGKDFDISDINYGKIIIMTDADTDGAHIQTLLLTFFYRHMKDLIIHKKVYIA 531

Query: 576 SPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
            PPL++IT   KS  Y  DEE   K    F K    K EI R+KGLGEM A QL +T MD
Sbjct: 532 LPPLYKITFNDKSFIYLWDEEELNK----FNKTNTKKYEIQRYKGLGEMNADQLWQTTMD 587

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
              R +++V I+  L      +     LMG   ++R  +IQE   F
Sbjct: 588 PKNRKIIQVTISDGL----LAERMFKTLMGDDVEKRKLWIQENVKF 629


>gi|157827616|ref|YP_001496680.1| DNA topoisomerase IV subunit B [Rickettsia bellii OSU 85-389]
 gi|157802920|gb|ABV79643.1| DNA topoisomerase IV subunit B [Rickettsia bellii OSU 85-389]
          Length = 662

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 325/660 (49%), Positives = 445/660 (67%), Gaps = 12/660 (1%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +     +  ++ Y A  I +LEGLEPVR RPGMYIGGTD  A+HHL SEV+DN+MDE +A
Sbjct: 8   NKEKKPKIINNTYSAKDIEVLEGLEPVRKRPGMYIGGTDLNAMHHLVSEVLDNSMDEAVA 67

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+A++I + +  +  +T+ DNGRGIP++NHPKFPNKS LE+ILTTLH+GGKF ++ Y+ +
Sbjct: 68  GFASIITIKMHQDHSITISDNGRGIPIDNHPKFPNKSALEVILTTLHSGGKFSSNVYQTA 127

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNAL++ L + V +Q  ++ Q +++G  L+ L  +E  +  +GT I F P
Sbjct: 128 GGLHGVGVSVVNALAEHLEIKVYKQGKLYKQSYAKGEKLTELICEEAPKRLKGTSINFIP 187

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           DP+IFGDK  F+  ++ ++ +SKAYL   V   W C+ E +    +P+K    FP GLK 
Sbjct: 188 DPEIFGDKIHFNPKKVYELARSKAYLYRGVTIEWECEIEAS--SDVPKKALINFPNGLKD 245

Query: 272 YLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330
           YL +K+    LI++EIF+G  E +    +          + +  I SYCNT+ T  GGTH
Sbjct: 246 YLSSKITPDDLITTEIFSGNVESEQDGIKLEWAICWQNNDSSAFIQSYCNTVPTPLGGTH 305

Query: 331 ESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           E GL+ AL R +K Y E+  NK+  ++  +D++ +A  +LS+FI EP F GQTK KLVS 
Sbjct: 306 EQGLKSALLRRLKAYGEMVGNKKTANLAIEDILETASVVLSIFIAEPTFQGQTKEKLVSQ 365

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
              +  EN ++D FDH+L  N   A  LLE  I  +E RL ++ ++ ++RK A +KLRLP
Sbjct: 366 GVSKPAENIIKDHFDHFLSSNKTIANNLLEHFIAIAEFRLNKKNEKTISRKNATQKLRLP 425

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC++    GTELFIVEGDSAGGSAKQARNR  QAVLPL GK+LNVAS+  EKI NN
Sbjct: 426 GKLADCTRTSPEGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSTLEKIVNN 485

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           Q I DL  AL C +   Y++E+LRYEK+IIMTDADVDGAHIASLL+TFF+  M  L+E  
Sbjct: 486 QAIQDLEIALACGSMKNYKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEDG 545

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           HL+L  PPL+R+TQ  K+ YA+DEE K K+ ++  K  K KIE+ RFKGLGEM+  QLKE
Sbjct: 546 HLYLAKPPLYRLTQSNKTYYANDEEEKAKLTDKLSKSSKAKIEVGRFKGLGEMMPMQLKE 605

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA-----SFIDDVG 685
           T M   KR+LL+V +       ++    ++ LMG K ++RF+FI E+A       I+++ 
Sbjct: 606 TTMHPEKRSLLKVTLED----FQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIINELD 661


>gi|603237|gb|AAA57341.1| DNA gyrase B subunit [Mycoplasma gallisepticum]
 gi|1583652|prf||2121321A DNA gyrase:SUBUNIT=B
          Length = 646

 Score =  577 bits (1487), Expect = e-162,   Method: Composition-based stats.
 Identities = 253/659 (38%), Positives = 371/659 (56%), Gaps = 25/659 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           N +  D Y + SI++LEGL  VR RPGMYIG TD+K LHH+  E+IDN++DE++AGY   
Sbjct: 2   NNTKKDQYSSQSIKVLEGLSAVRKRPGMYIGSTDQKGLHHMIWEIIDNSVDEMMAGYGTT 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           ++++L  N  + V D+GRGIPV+ H K  NKST+E +LT LHAGGKFD+ TY +SGGLHG
Sbjct: 62  VKLTLKDNYLVEVEDDGRGIPVDIHEK-TNKSTVETVLTILHAGGKFDSDTYSMSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           VG SVVNALS    V V R   I   +F  G + L PLE       K+GTRI F PD  I
Sbjct: 121 VGASVVNALSSSFKVWVNRDYKIHYIEFKDGGVSLKPLEIIGTDNKKQGTRIQFVPDFSI 180

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
                 +D   +    +  A+L+  +K  ++ ++   +         + + GG+K Y++ 
Sbjct: 181 MEQF-EYDETIISDRIEQLAFLNKGIKFIFNDERTDKKTKQE-----WLYEGGIKQYVEN 234

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGT-------VEWAIAWCE-ENPEITSYCNTILTDEG 327
              ++  I  +I  G+ + K T           +E A  +         S+CN I T++G
Sbjct: 235 LNASKEPIIPQIIYGEKKTKVTLPKRNLEVTMLLEVAFQYTNGYYNSTYSFCNNIHTNQG 294

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAI-SIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           GTHE GLR+   R  +   E    K     I  +DL      I+S+   EP++ GQTK +
Sbjct: 295 GTHEEGLRMLFIRSYRYALEKKFIKETDGKISKEDLSEGLTAIISIKHSEPQYQGQTKDR 354

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L + + +    + + +  + + ++NP EA K+    +     R R     E  RK+    
Sbjct: 355 LGNTEVREFTNSVVSELLERFFLENPEEAAKITAKAVSAMFSRKRSEAALESARKSPFES 414

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC+      +EL+IVEGDSAGGSAK  R+R  QA+LPLRGK+LNV  A  EK
Sbjct: 415 ASLPGKLADCTTKDG-ISELYIVEGDSAGGSAKSGRDRFYQAILPLRGKVLNVEKANHEK 473

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           I  N++I  L+ A+G     ++  + +RY K+IIMTDADVDGAHI  LLLTFF++ M+ L
Sbjct: 474 IFKNEEIRTLITAIGAGVNPEFSLDKIRYNKIIIMTDADVDGAHIRILLLTFFFRHMFPL 533

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           IE+ H+++  PPL+R++   ++ Y + +   ++   +   +   + E+ R+KGLGEM   
Sbjct: 534 IEKGHVYIAQPPLYRVSYNKQNKYIYSDAQLEEWKNQ---NPNVRYELQRYKGLGEMDDV 590

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           QL ET MD  KR LL+V IN       +   + + LMG +   R  FI++ A  + ++ 
Sbjct: 591 QLWETTMDPEKRILLKVSIND----AANADKTFSLLMGDEVSPRRDFIEKNAKSVKNID 645


>gi|296453192|ref|YP_003660335.1| DNA gyrase subunit B [Bifidobacterium longum subsp. longum JDM301]
 gi|296182623|gb|ADG99504.1| DNA gyrase, B subunit [Bifidobacterium longum subsp. longum JDM301]
          Length = 709

 Score =  577 bits (1487), Expect = e-162,   Method: Composition-based stats.
 Identities = 248/702 (35%), Positives = 368/702 (52%), Gaps = 29/702 (4%)

Query: 8   LFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIG 67
           L      + Q  +   + +             A ++Y+AS +R+LEGLE VR+RPGMYIG
Sbjct: 14  LADETSKEEQLKAAAERINNAELTEGELDESMAPEHYEASDLRVLEGLEAVRIRPGMYIG 73

Query: 68  GTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNK 127
            T  + LHHL  E++DN++DE +AGYA+ IEV++  +  + VVD+GRGIPV+  P     
Sbjct: 74  STGPRGLHHLVYEIVDNSVDEALAGYASHIEVTILPDNGIRVVDDGRGIPVDEVP-GEGV 132

Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187
           S +E ++T LHAGGKF    Y +SGGLHGVGISVVNALS  + + V RQ   ++Q +   
Sbjct: 133 SGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHWTQTYIDQ 192

Query: 188 IPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
            P +PL++ + +      GT +TF  DPKIF     +D   L    Q  A+L+  +K   
Sbjct: 193 HPTAPLKQGDPMTEGESTGTSVTFWADPKIFETTI-YDFETLRSRFQQMAFLNKGLKISL 251

Query: 246 SCDKEI------------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
           + ++E              E     +   + +  G+K Y+   ++ R     E      E
Sbjct: 252 TDERENDQAGDEVAGDAADEPGAKHQTVTYQYLNGIKDYVDYLVKVRKATPVEEDVISFE 311

Query: 294 -KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ- 350
            +      + E A+ W       + ++ NTI T EGGTHE G R ALT  + +YA     
Sbjct: 312 AEDLKLGISAELAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLVNRYARDKGI 371

Query: 351 -NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
              +  ++  DD+      ++SV +  P+F GQTKTKL + +A+  V+  + D    +  
Sbjct: 372 LKDKDENLSGDDVREGLTAVISVKLTNPQFEGQTKTKLGNSEAKTFVQRVMTDKLGDWFD 431

Query: 410 QNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFI 468
            +P EA  +++  IE S  RL  +K RE  R+ +I     +P KL DC  +     ELFI
Sbjct: 432 AHPNEAKNIIQKAIEASRARLAAKKARENTRRKSIFESAGMPDKLKDCQSSNPEECELFI 491

Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528
           VEGDSAGGSA Q RN   QA+LPLRGKILN   A  +++  +  I  L+ A+G      +
Sbjct: 492 VEGDSAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSDTIESLITAVGGGYGEDF 551

Query: 529 REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKS 588
               +RY KVIIM DADVDGAHIA+L LT F++ M  +I   ++++  PPL+R+      
Sbjct: 552 DISKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKWTKGP 611

Query: 589 V-YAHDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644
             + + +  + ++L E K +G+       I R+KGLGEM   +L ET MD   R L +V 
Sbjct: 612 HDFVYTDAERDRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVH 671

Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           I           ++ + LMG + + R  FIQ  A  +  +  
Sbjct: 672 IED----AAAADETFSMLMGDEVEPRRLFIQRNAKNVRWIDA 709


>gi|328954619|ref|YP_004371952.1| DNA gyrase subunit B [Coriobacterium glomerans PW2]
 gi|328454943|gb|AEB06137.1| DNA gyrase subunit B [Coriobacterium glomerans PW2]
          Length = 674

 Score =  577 bits (1487), Expect = e-162,   Method: Composition-based stats.
 Identities = 258/685 (37%), Positives = 357/685 (52%), Gaps = 49/685 (7%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  ++Y+   I+ILEGLE VR RPGMYIG T    LHHL  EV+DN++DE +AGY   I 
Sbjct: 2   AKKNDYNGGEIKILEGLEAVRKRPGMYIGSTSASGLHHLVYEVVDNSVDEAMAGYCTRIG 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +  +TV+DNGRGIPV+ HP      TLE+++T LHAGGKFDN  Y++SGGLHGVG
Sbjct: 62  VTIHADNSVTVIDNGRGIPVDKHP-VKRIPTLEVVMTILHAGGKFDNKAYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           ISVVNALS  + V V R   I+   FSRG  +  +          GT ITF PD +IF  
Sbjct: 121 ISVVNALSHRVRVQVKRDGNIYEMVFSRGKTVEKMHIVG-SSRSTGTTITFWPDDEIFET 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              FD   L    Q  A+L+  ++   + ++E+A     P  EEF + GG+  +++    
Sbjct: 180 TI-FDYDTLRNRLQETAFLNRNLRITITDERELA-----PRTEEFVYAGGIVDFVKYLNH 233

Query: 279 NRSLIS----SEIFTGKTEKK--GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
            + +          +G +E+       G VE A+ W       +  Y N I T EGG H 
Sbjct: 234 GKDIPEGLKKPIYVSGASEEDAPVERTGEVEVALQWSSSYTENVMCYANDIFTPEGGMHL 293

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G R ALTR I  YA       ++  ++  DD+      ++SV + +P+F GQTK KL S
Sbjct: 294 EGFRTALTRVINDYARRQNMIKEKDANLTGDDVREGLAAVISVKLADPQFEGQTKAKLGS 353

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLR 448
              +  V   L D    YL ++P    +++    + S  R   RK RE  R+ + +    
Sbjct: 354 SFMRGLVLKVLSDGLSDYLEEHPRAGREIVRKAQQASRARNAARKAREATRRKSLLETAA 413

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS   A  TELFIVEGDSAGGSAK  R R  QA+LPLRGKILNV   G  +  
Sbjct: 414 LPGKLADCSVRDAEMTELFIVEGDSAGGSAKDGRRRDIQAILPLRGKILNVERVGDHRAF 473

Query: 509 NNQQIMDLVQALGCRTRSQ------YREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
           +++ I  L+ A+G            +     RY K+IIMTDADVDGAHI +LLLTFFY+ 
Sbjct: 474 SSETIQSLITAIGSGVTQVQGDGEGFDVSKARYHKIIIMTDADVDGAHIRTLLLTFFYKY 533

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAH---------------------DEEHKQKIL 601
           M  LI++  +++  PP+F +  G K  Y +                      +E   ++ 
Sbjct: 534 MRPLIDEGFVYVACPPIFGVKVGKKIHYVYPDGRTPEEEILRRTITSLGLDPDEDADELE 593

Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
            +  K       + R+KGLGEM  +QL  T MD   R L RV I          + ++ +
Sbjct: 594 ADRPKKKHRGYAVQRYKGLGEMDPAQLASTTMDPKTRILQRVTIED----ASLAERAVRE 649

Query: 662 LMGTKADERFKFIQERASFIDDVGT 686
           LMG     R  +I++ A     +  
Sbjct: 650 LMGPDVAPRRDYIEKHAHDARFLDA 674


>gi|297558991|ref|YP_003677965.1| DNA gyrase subunit beta [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296843439|gb|ADH65459.1| DNA gyrase, B subunit [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 645

 Score =  577 bits (1487), Expect = e-162,   Method: Composition-based stats.
 Identities = 248/653 (37%), Positives = 372/653 (56%), Gaps = 22/653 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YDA SI +LEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +AG+A+ IEV+L  
Sbjct: 3   YDAGSITVLEGLEAVRKRPGMYIGSTGERGLHHLVYEVVDNSVDEALAGHADAIEVTLLA 62

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G + V DNGRGIP + HP    +  +E++LTTLHAGGKFD  +Y +SGGLHGVG+SVVN
Sbjct: 63  DGGVCVADNGRGIPTDLHP-VEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHGVGVSVVN 121

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS  L V +     ++ Q++    P   L K  +  ++ GT+ITF PD  IF     F 
Sbjct: 122 ALSTALEVEIRLHGHVWRQRYEMTAPTGELVK-GESTDETGTQITFWPDGDIFET-TTFS 179

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L +  Q  A+L+  +      ++      G P    F++  GL  Y++     +   
Sbjct: 180 FETLARRMQEMAFLNKGLSITIRDER-PEHTDGGPTVNTFHYDEGLSDYVRHINAKKEPA 238

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
            + I + + E +G    +VE A+ W +     + ++ NTI T EGGTHE G R ALT  +
Sbjct: 239 HASIISFEEEGEGI---SVEIAMQWNQSYTSSVHTFANTINTAEGGTHEEGFRSALTTLV 295

Query: 343 KKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
            +YA   +   ++  ++  DD+      I+SV + +P+F GQTKTKL + +A+  V+   
Sbjct: 296 NRYARDQKLLREKDDNLTGDDIREGLTAIISVKLADPQFEGQTKTKLGNTEAKSFVQKVT 355

Query: 401 RDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
            +    +  +NP EA  ++ +           R+ +    RKT +    LPGKL+DC   
Sbjct: 356 NEHLRDWFERNPGEAKDIVSKASQAARARVAARQARDLTRRKTLLETTSLPGKLSDCQST 415

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
                E++IVEGDSAGGSAK  RN  NQA+LP+RGKILNV  +  ++I  N ++  ++ A
Sbjct: 416 NPEECEVYIVEGDSAGGSAKGGRNPHNQAILPIRGKILNVEKSRIDRILKNAEVQAIITA 475

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           LG     ++  E LRY KVI+M DADVDG HI +LLLT  ++ M  L+E  +++L +PPL
Sbjct: 476 LGTGIHEEFDAEKLRYHKVILMADADVDGQHIRTLLLTLLFRFMKPLVEAGNVYLAAPPL 535

Query: 580 FRIT---QGTKSVYAHDEEHKQKILE----EFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++I    +G+ + YA  +  + +++E    + K+  + +  + RFKGLGEM A++L +T 
Sbjct: 536 YKIKWDQKGSDASYAFSDAERDRVIEAGIAQGKRDPRPRDMVQRFKGLGEMNANELWDTT 595

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           MD ++R LL+V +           +  + LMG   + R  FIQ  A  +  + 
Sbjct: 596 MDPDRRVLLQVSLED----AAQADELFSVLMGEDVESRRAFIQRNAKDVRFLD 644


>gi|91205045|ref|YP_537400.1| DNA topoisomerase IV subunit B [Rickettsia bellii RML369-C]
 gi|122990939|sp|Q1RK03|PARE_RICBR RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|91068589|gb|ABE04311.1| DNA topoisomerase IV, B subunit [Rickettsia bellii RML369-C]
          Length = 662

 Score =  577 bits (1486), Expect = e-162,   Method: Composition-based stats.
 Identities = 326/660 (49%), Positives = 446/660 (67%), Gaps = 12/660 (1%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +     +  ++ Y A  I +LEGLEPVR RPGMYIGGTD  A+HHL SEV+DN+MDE +A
Sbjct: 8   NKEKKTKIINNTYSAKDIEVLEGLEPVRKRPGMYIGGTDLNAMHHLVSEVLDNSMDEAVA 67

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+A++I + +  +  +T+ DNGRGIP++NHPKFPNKS LE+ILTTLH+GGKF ++ Y+ +
Sbjct: 68  GFASIITIKMHQDHSITISDNGRGIPIDNHPKFPNKSALEVILTTLHSGGKFSSNVYQTA 127

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNAL++ L + V +Q  ++ Q +++G  L+ L  +E  +  +GT I F P
Sbjct: 128 GGLHGVGVSVVNALAEHLEIKVYKQGKLYKQSYAKGEKLTELICEEAPKRLKGTSINFIP 187

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           DP+IFGDK  F+  ++ ++ +SKAYL   V   W C+ E +    +P+K    FP GLK 
Sbjct: 188 DPEIFGDKIHFNPKKVYELARSKAYLYRGVTIEWECEIEAS--SDVPKKALINFPNGLKD 245

Query: 272 YLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330
           YL +K+    LI++EIF+G  E +    +          + +  I SYCNT+ T  GGTH
Sbjct: 246 YLSSKITPDDLITTEIFSGNVESEQDGIKLEWAICWQNNDSSAFIQSYCNTVPTPLGGTH 305

Query: 331 ESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           E GL+ AL RG+K Y E+  NK+  ++  +D++ +A  +LS+FI EP F GQTK KLVS 
Sbjct: 306 EQGLKSALLRGLKAYGEMVGNKKTANLAIEDILETASVVLSIFIAEPTFQGQTKEKLVSQ 365

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
              +  EN ++D FDH+L  N   A  LLE  I  +E RL ++ ++ ++RK A +KLRLP
Sbjct: 366 GVSKPAENIIKDHFDHFLSSNKTIANNLLEHFIAIAEFRLNKKNEKTISRKNATQKLRLP 425

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC++    GTELFIVEGDSAGGSAKQARNR  QAVLPL GK+LNVAS+  EKI NN
Sbjct: 426 GKLADCTRTSPEGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSTLEKIVNN 485

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           Q I DL  AL C +   Y++E+LRYEK+IIMTDADVDGAHIASLL+TFF+  M  L+E  
Sbjct: 486 QAIQDLEIALACGSMKNYKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEDG 545

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           HL+L  PPL+R+TQ  K+ YA+DEE K K+ ++  K  K KIE+ RFKGLGEM+  QLKE
Sbjct: 546 HLYLAKPPLYRLTQSNKTYYANDEEEKAKLTDKLSKSSKAKIEVGRFKGLGEMMPMQLKE 605

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA-----SFIDDVG 685
           T M   KR+LL+V +       ++    ++ LMG K ++RF+FI E+A       I+++ 
Sbjct: 606 TTMHPEKRSLLKVTLED----FQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIINELD 661


>gi|239637043|ref|ZP_04678037.1| DNA topoisomerase IV, B subunit [Staphylococcus warneri L37603]
 gi|239597393|gb|EEQ79896.1| DNA topoisomerase IV, B subunit [Staphylococcus warneri L37603]
          Length = 666

 Score =  577 bits (1486), Expect = e-162,   Method: Composition-based stats.
 Identities = 237/654 (36%), Positives = 356/654 (54%), Gaps = 31/654 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  ++Y   SI++LEGLE VR RPGMYIG TD++ LHHL  EV+DN++DEV+ GY + I 
Sbjct: 4   NKQNHYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEVVDNSVDEVLNGYGDEIT 63

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V L+ +  +++ DNGRG+P   H     K T+++I T LHAGGKF    Y+ SGGLHGVG
Sbjct: 64  VILNQDDSISIEDNGRGMPTGIH--ASGKPTVQVIFTILHAGGKFGQGGYKTSGGLHGVG 121

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS+ L V + R   I+ Q F  G   +    KE    K GT++TF+PDP+IF  
Sbjct: 122 ASVVNALSEWLEVEIHRDGNIYKQSFKDGGVPATELLKEGKTKKTGTKVTFKPDPEIFKA 181

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L +  Q  A+L   +K      +   E+             G+K ++    E
Sbjct: 182 TTSFNFDVLSERLQESAFLLKNLKIKLIDLRRGKEREEYYHY-----EEGIKEFVSYVNE 236

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            + ++  E+ T      G     V+ A  + ++    I S+ N + T +GGTHE G + A
Sbjct: 237 GKEVLH-EVTTFTGTSNGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 292

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
           +TR    YA       ++  ++  +D+      I+SV I E   +F GQTK+KL + +A+
Sbjct: 293 MTRVFNDYARRINELKEKDKNLDGNDIREGLTAIVSVRIPEELLQFEGQTKSKLGTSEAR 352

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450
             V++ + +    YL +    +  L++  I+  + R   RK RE  R     K     L 
Sbjct: 353 SAVDSVVSEKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 412

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  E I  N
Sbjct: 413 GKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 472

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    ++++ ED  Y ++IIMTDAD DGAHI  LLLTFF++ M  L++  
Sbjct: 473 EEINTIIHTIGAGVGNEFKIEDSNYSRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 532

Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +F+  PPL+++ +G     K  YA  ++   K+ ++  K       + R+KGLGEM   
Sbjct: 533 RVFIALPPLYKLEKGKGKSKKVEYAWTDDELDKLQKQLGK----GFSLQRYKGLGEMNPE 588

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET M+ + RTL+RV++  ++ S K     +  LMG K   R ++I+    F
Sbjct: 589 QLWETTMNPDTRTLIRVQVEDEVRSSKR----VTTLMGDKVAPRREWIENHVEF 638


>gi|308189672|ref|YP_003922603.1| topoisomerase IV, subunit B [Mycoplasma fermentans JER]
 gi|307624414|gb|ADN68719.1| topoisomerase IV, subunit B [Mycoplasma fermentans JER]
          Length = 637

 Score =  577 bits (1486), Expect = e-162,   Method: Composition-based stats.
 Identities = 242/648 (37%), Positives = 352/648 (54%), Gaps = 29/648 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             YD SSI+ L+GLE VR RPGMYIG TD   LHHL  E++DN++DE +AGYAN I V+L
Sbjct: 2   QKYDESSIQQLKGLEAVRKRPGMYIGSTDVNGLHHLIWEIVDNSIDEALAGYANEISVTL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             NG + V+DNGRGIPV   P    KS +E++ T LHAGGKF+   Y+ SGGLHGVG SV
Sbjct: 62  TKNGSVKVMDNGRGIPVGKTP--SGKSAVELVFTELHAGGKFNEGAYKTSGGLHGVGSSV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS +L VTV R   I+   F  G  +     +    NK GT + F P+ +IF   A 
Sbjct: 120 VNALSTKLIVTVYRDKKIYETIFENGDNIVQRTLEVGNTNKHGTMVEFWPNYEIFKR-AK 178

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F    + +  +   +L G ++  +  +    E         F +  GL  ++    ++++
Sbjct: 179 FSYETIAERLRESCFLIGGLRIHFKDEISDRETE-------FMYEDGLHAFVDFINDSKN 231

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
            +       +T++        ++  ++   N  + S+ N + T +GGTHE GL+ ALT+ 
Sbjct: 232 ALGDIKTFKETKRDIEVECGFQYTDSY---NETVLSFVNNVKTKDGGTHEIGLKSALTKT 288

Query: 342 IKKYAELTQNKRAIS-IISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVEN 398
             ++A   +  +  +    DD+      ILSV I E   EF  QTK KL + +A+  VE 
Sbjct: 289 FNEFALEEKALKGKNTFDGDDIREGLTIILSVKIPEKLLEFVSQTKEKLGTPEAKGVVEE 348

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA---IRKLRLPGKLAD 455
            +   F  ++ +N   A K+LE +   SE R   RK R   R T      K  L GKL  
Sbjct: 349 IVSKNFKIWINENKPLAKKILEKIKRASESRAAARKARVEARSTKNALKEKQILSGKLTP 408

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
               I    ELF+VEGDSAGGSAK  R+R  QA+LPLRGK++N   A   +I  N++I  
Sbjct: 409 AQSKIPAEKELFLVEGDSAGGSAKLGRDRKYQAILPLRGKVINTEKARLFEILKNEEIGT 468

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++  +G     ++  + ++Y KV+IMTDAD DGAHI  LLLTFF++ M  L+E   +++ 
Sbjct: 469 IINTIGAGVGDEFDLKKVQYGKVVIMTDADTDGAHIQILLLTFFFRHMRQLVENGMVYIA 528

Query: 576 SPPLFRITQ---GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
            PPLF++T      + +YA DE   +++L+          E+ R+KGLGEM A QL ET 
Sbjct: 529 LPPLFKLTSTRGKKEVLYAWDENELRELLQ-LPNFKNA--EVQRYKGLGEMNADQLWETT 585

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           M+   RTL++V+I          +  ++ LMG   + R ++I +   F
Sbjct: 586 MNPITRTLVQVKIED----AALAERRVSTLMGDNVEPRKEWINKNVEF 629


>gi|297739950|emb|CBI30132.3| unnamed protein product [Vitis vinifera]
          Length = 707

 Score =  577 bits (1486), Expect = e-162,   Method: Composition-based stats.
 Identities = 237/680 (34%), Positives = 379/680 (55%), Gaps = 23/680 (3%)

Query: 17  QGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHH 76
           + ++           + AF   ++S  Y +  I++LEGL+PVR RPGMYIG T  + LHH
Sbjct: 39  RNAASPRAFMSSSIATDAFQESTSSKAYGSEQIQVLEGLDPVRKRPGMYIGSTGLRGLHH 98

Query: 77  LFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTT 136
           L  E++DNA+DE  AG+A+ ++V L  +  +++ DNGRGIP E HP    KS+LE +LT 
Sbjct: 99  LVYEILDNAIDEAQAGFASKVDVVLLADDSVSITDNGRGIPTELHP-VTKKSSLETVLTV 157

Query: 137 LHAGGKFDN--STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           LHAGGKF    S Y +SGGLHGVG+SVVNALS+ L VTV R    + QK+SRG P++ L 
Sbjct: 158 LHAGGKFGGASSGYSVSGGLHGVGLSVVNALSEALEVTVWRDGMEYQQKYSRGKPVTSLT 217

Query: 195 K---KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
                 +  + +GT I F PD ++F  +  FD   +    +  A+L+  +      + + 
Sbjct: 218 HRVLPTESTDLQGTHIRFWPDKEVFTTEIQFDYNTIAGRIRELAFLNPELAITLRKEDKD 277

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
            EK    +  E+ + GGL  Y++    ++  +   +   K     +    ++W       
Sbjct: 278 PEKN---QYNEYCYAGGLVEYVRWLNTDKKPVHDVVGFRKVADGISIDVALQWCS--DAY 332

Query: 312 NPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369
           +  +  Y N+I T +GGTH  G++ +LTR +    + ++   ++ I++  + +      +
Sbjct: 333 SDTMLGYANSIRTIDGGTHIDGMKASLTRTLNNLGKKSKIIKEKDITLSGEHVREGLTCV 392

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEE 428
           +SV +  PEF GQTKT+L + + ++ V+  +++    YL  +P     +L   +      
Sbjct: 393 ISVKVPNPEFEGQTKTRLGNPEVRKVVDQTVQEFLTEYLELHPDVLDLILSKSLNALKAA 452

Query: 429 RLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
              +R +  V +K+ ++   LPGKLADCS      +E+FIVEGDSAGGSAKQ R+R  QA
Sbjct: 453 LAAKRARELVRQKSVLKSSSLPGKLADCSSTNPEESEIFIVEGDSAGGSAKQGRDRRFQA 512

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVD 547
           +LPLRGKILN+       +  +++I +L+  LG   + +  +++ LRY K+II+TDADVD
Sbjct: 513 ILPLRGKILNIERKDEAAMYKSEEIQNLILGLGLGVKGEDFKKEALRYHKIIILTDADVD 572

Query: 548 GAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607
           GAHI +LLLTFF++    L ++  +++  PPLF++ +G +  Y +D+   +++      +
Sbjct: 573 GAHIRTLLLTFFFRYQRALFDEGCIYVGVPPLFKVERGKQVHYCYDDAELKQLQHSLPPN 632

Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667
                 I RFKGLGEM+  QL ET MD  +R L ++ +        +     + LMG + 
Sbjct: 633 --ASYSIQRFKGLGEMMPVQLWETTMDPERRLLKQLVVED----AAEANVVFSSLMGARV 686

Query: 668 DERFKFIQERASF--IDDVG 685
           D R + IQ+ AS   +D + 
Sbjct: 687 DFRKELIQKSASTMKLDQLD 706


>gi|225441215|ref|XP_002266668.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 719

 Score =  577 bits (1486), Expect = e-162,   Method: Composition-based stats.
 Identities = 237/680 (34%), Positives = 379/680 (55%), Gaps = 23/680 (3%)

Query: 17  QGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHH 76
           + ++           + AF   ++S  Y +  I++LEGL+PVR RPGMYIG T  + LHH
Sbjct: 51  RNAASPRAFMSSSIATDAFQESTSSKAYGSEQIQVLEGLDPVRKRPGMYIGSTGLRGLHH 110

Query: 77  LFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTT 136
           L  E++DNA+DE  AG+A+ ++V L  +  +++ DNGRGIP E HP    KS+LE +LT 
Sbjct: 111 LVYEILDNAIDEAQAGFASKVDVVLLADDSVSITDNGRGIPTELHP-VTKKSSLETVLTV 169

Query: 137 LHAGGKFDN--STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           LHAGGKF    S Y +SGGLHGVG+SVVNALS+ L VTV R    + QK+SRG P++ L 
Sbjct: 170 LHAGGKFGGASSGYSVSGGLHGVGLSVVNALSEALEVTVWRDGMEYQQKYSRGKPVTSLT 229

Query: 195 K---KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
                 +  + +GT I F PD ++F  +  FD   +    +  A+L+  +      + + 
Sbjct: 230 HRVLPTESTDLQGTHIRFWPDKEVFTTEIQFDYNTIAGRIRELAFLNPELAITLRKEDKD 289

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
            EK    +  E+ + GGL  Y++    ++  +   +   K     +    ++W       
Sbjct: 290 PEKN---QYNEYCYAGGLVEYVRWLNTDKKPVHDVVGFRKVADGISIDVALQWCS--DAY 344

Query: 312 NPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369
           +  +  Y N+I T +GGTH  G++ +LTR +    + ++   ++ I++  + +      +
Sbjct: 345 SDTMLGYANSIRTIDGGTHIDGMKASLTRTLNNLGKKSKIIKEKDITLSGEHVREGLTCV 404

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEE 428
           +SV +  PEF GQTKT+L + + ++ V+  +++    YL  +P     +L   +      
Sbjct: 405 ISVKVPNPEFEGQTKTRLGNPEVRKVVDQTVQEFLTEYLELHPDVLDLILSKSLNALKAA 464

Query: 429 RLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
              +R +  V +K+ ++   LPGKLADCS      +E+FIVEGDSAGGSAKQ R+R  QA
Sbjct: 465 LAAKRARELVRQKSVLKSSSLPGKLADCSSTNPEESEIFIVEGDSAGGSAKQGRDRRFQA 524

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVD 547
           +LPLRGKILN+       +  +++I +L+  LG   + +  +++ LRY K+II+TDADVD
Sbjct: 525 ILPLRGKILNIERKDEAAMYKSEEIQNLILGLGLGVKGEDFKKEALRYHKIIILTDADVD 584

Query: 548 GAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607
           GAHI +LLLTFF++    L ++  +++  PPLF++ +G +  Y +D+   +++      +
Sbjct: 585 GAHIRTLLLTFFFRYQRALFDEGCIYVGVPPLFKVERGKQVHYCYDDAELKQLQHSLPPN 644

Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667
                 I RFKGLGEM+  QL ET MD  +R L ++ +        +     + LMG + 
Sbjct: 645 --ASYSIQRFKGLGEMMPVQLWETTMDPERRLLKQLVVED----AAEANVVFSSLMGARV 698

Query: 668 DERFKFIQERASF--IDDVG 685
           D R + IQ+ AS   +D + 
Sbjct: 699 DFRKELIQKSASTMKLDQLD 718


>gi|237732924|ref|ZP_04563405.1| DNA topoisomerase parE [Mollicutes bacterium D7]
 gi|229383993|gb|EEO34084.1| DNA topoisomerase parE [Coprobacillus sp. D7]
          Length = 645

 Score =  577 bits (1486), Expect = e-162,   Method: Composition-based stats.
 Identities = 233/658 (35%), Positives = 361/658 (54%), Gaps = 34/658 (5%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
               +A  NYD S+I+ILEGLE VR RPGMYIG TD + LHHL  E++DNA+DE ++G+ 
Sbjct: 1   MNYMAAKSNYDESNIQILEGLEAVRKRPGMYIGSTDARGLHHLVWEIVDNAIDEALSGFG 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD-NSTYEISGG 153
           + I+V++  +  + V D+GRG+P   H     K T E+ILT LHAGGKF+ +  Y+ SGG
Sbjct: 61  DNIQVTICKDNSIKVTDHGRGMPTGMH--ASGKPTTEVILTILHAGGKFNEDGGYKTSGG 118

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG SVVNALS  L VT+ R   I+ Q+F  G       K     N+ GT I F PD 
Sbjct: 119 LHGVGASVVNALSSWLEVTIYRDGKIWQQRFEDGGSKVGKLKVIGKSNQTGTTIHFMPDS 178

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF     ++ + + +     A+L   +K     ++   E         + +  GL  ++
Sbjct: 179 SIFSV-YEYNFSTISERLMESAFLLKGIKIDLVDERTGKEIS-------YQYDNGLTAFV 230

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +     +  ++  I    T     +   V+ A+ +         S+ N + T +GGTHE+
Sbjct: 231 EYLNYEKETLNEIINIEGT----NNEIEVDVAMQFTSGYQETTLSFVNLVRTGDGGTHET 286

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLV 388
           G R ALTR   +YA       ++  ++  +D+      I+S+ + E   +F GQTK+KL 
Sbjct: 287 GFRSALTRTFNEYARKYGLLKEKDKNLEGNDVREGLSAIISIKVPEHYLQFEGQTKSKLG 346

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE--ERLRRRKQREVNRKTAIRK 446
           + +A+  V+  + +   ++L ++   A  L++ +I+ ++  +  R+ ++     K   ++
Sbjct: 347 TPEARNVVDTVVYEKLTYFLEEHKETADNLVKKMIKAAQVRDAARKAREAARKGKGPRQE 406

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             L GKLA          EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A    
Sbjct: 407 KILSGKLAPAQSKDKKRKELYLVEGDSAGGSAKQGRDRKYQAILPLRGKVVNTEKAAMAD 466

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           I  N++I  ++  +G    + + E+D  Y KVIIMTDAD DGAHI  LLLTFFY+ M DL
Sbjct: 467 ILKNEEIATIINTIGAGVGADFNEKDSNYNKVIIMTDADTDGAHIQILLLTFFYRYMRDL 526

Query: 567 IEQKHLFLISPPLFRITQ--GTKS--VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
           I    +++  PPL+++++  G K   VYA +E+  ++  ++  +       + R+KGLGE
Sbjct: 527 ITAGKVYIALPPLYKVSKKSGKKEDIVYAWEEDELEEAKKKIGR----GYNVQRYKGLGE 582

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           M ASQL ET M+   RTL++V I          +  ++ LMG K + R ++I++   F
Sbjct: 583 MNASQLWETTMNPETRTLIQVSIED----AAIVERRVSVLMGDKVEPRREWIEQNVQF 636


>gi|299541761|ref|ZP_07052084.1| DNA gyrase subunit B [Lysinibacillus fusiformis ZC1]
 gi|298725499|gb|EFI66140.1| DNA gyrase subunit B [Lysinibacillus fusiformis ZC1]
          Length = 644

 Score =  577 bits (1486), Expect = e-162,   Method: Composition-based stats.
 Identities = 257/648 (39%), Positives = 374/648 (57%), Gaps = 22/648 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y+A  I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AG+   I+V++
Sbjct: 14  QAYEADQIQVLEGLEAVRKRPGMYIGSTSSKGLHHLVWEIVDNSIDEALAGFCTDIKVTI 73

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           +   ++ V DNGRGIPV    K   K  +E+I+T LHAGGKF    Y++SGGLHGVG SV
Sbjct: 74  EKENWIRVEDNGRGIPVSIQEKM-GKPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASV 132

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS E  V V R+  I   KF RG  +  L       +  GT   F+ DP+IF +   
Sbjct: 133 VNALSVETIVQVHREGHIHEIKFERGKTVQELMVIGDT-DHNGTTTRFKADPEIFKETTV 191

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L    +  AYL+  +K   + ++E   +        +++ GG+++Y++   +++ 
Sbjct: 192 YEYDILAHRIRELAYLNRGIKITIADEREEEIRSTT-----YHYEGGIRSYVEHLNQSKD 246

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340
            I   I     EK G    TVE A+ +         S+ N I T EGGTHESG + ALTR
Sbjct: 247 PIHDPIDVL-GEKDGI---TVEIAMQYNAGFSSNIFSFANNINTYEGGTHESGFKTALTR 302

Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  YA  +   +    ++  +D+      I+SV   +P+F GQTKTKL + +  +   +
Sbjct: 303 VINDYARKSGLLKESDANLTGEDVREGLTAIVSVKHPDPQFEGQTKTKLGNSEVSQITNS 362

Query: 399 ALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
              D F+ ++++NP  A K++E  ++        ++ +    RK A+    LPGKLADCS
Sbjct: 363 LFSDGFERFMLENPTVARKIVEKGLMAARARVAAKKAREFTRRKNALEVSSLPGKLADCS 422

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                  E++IVEGDSAGGSAK  R+R  QA+LPLRGKILNV  A  +KI +N +I  ++
Sbjct: 423 STNPADCEIYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDKILSNAEIRAMI 482

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A G     ++  E  RY K+IIMTDADVDGAHI +LLLTFF++ +  LIE  ++++  P
Sbjct: 483 TAFGTGIGEEFNLEKARYHKIIIMTDADVDGAHIRTLLLTFFFRFLRPLIEAGYIYIAQP 542

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+++ QG    Y +DEE  ++ILE   K    K  + R+KGLGEM A QL ET MD   
Sbjct: 543 PLYQVKQGKHIEYCYDEETLKEILERLPK--MPKPNVQRYKGLGEMNAEQLWETTMDPEY 600

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           RTLL+VE++  +        +  +LMG + + R +FI+E A +  ++ 
Sbjct: 601 RTLLQVELDDAIK----ANQAFERLMGDEVEPRRQFIEENAVYA-NLD 643


>gi|78707345|gb|ABB46478.1| DNA gyrase subunit B [Acholeplasma equifetale]
 gi|78707347|gb|ABB46479.1| DNA gyrase subunit B [Acholeplasma equifetale]
          Length = 588

 Score =  577 bits (1486), Expect = e-162,   Method: Composition-based stats.
 Identities = 245/605 (40%), Positives = 363/605 (60%), Gaps = 19/605 (3%)

Query: 58  VRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIP 117
           VR RPGMYIG T E+ LHHL  E++DN++DE +AGYA+ IE+ +  +  + V DNGRGIP
Sbjct: 1   VRKRPGMYIGSTGERGLHHLVWEIVDNSIDEALAGYADHIEIEVLKDNVIRVSDNGRGIP 60

Query: 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN 177
           V+ HPK   +  +E ILTTLHAGGKFD  +Y++SGGLHGVG SVVN LS    V + +  
Sbjct: 61  VDIHPK-TGRPAVETILTTLHAGGKFDKGSYKVSGGLHGVGASVVNGLSVWYVVEIHKDG 119

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            I+ QK+ RGIP   L++  +  N+ GT  TF+ DP IF +   +D   L    Q  A+L
Sbjct: 120 KIYEQKYERGIPAYDLKELGET-NRTGTITTFKADPLIFTETTVYDIETLRTRIQQLAFL 178

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +    S  ++    Y     E F + GG+  Y++   +N+  I  +I   + E+ G 
Sbjct: 179 NRGITISLSDSRDENHIYQ----ETFKYDGGIIEYVKFLNQNKKTIHPDIIYFEKEQDGV 234

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
              TVE A+ + +   P I S+ N I T EGG HE G ++ALTR I +YA+  + K+  +
Sbjct: 235 ---TVEVAMQYVDTYTPNIHSFTNNISTTEGGMHEDGYKMALTRVISRYADDMKAKKDDA 291

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           II +D       I+SV   EP+F GQTKTKL + + +       ++  + +L++NP +A 
Sbjct: 292 IIGEDTREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAITSQVTQEALERFLLENPQQAK 351

Query: 417 KLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            ++E VIE +  R+  RK +E+ R+ + + +L    KLADC       +ELFIVEGDSAG
Sbjct: 352 SIVEKVIEATRARVASRKAKELARRKSPLDQLDFASKLADCRSKDPEKSELFIVEGDSAG 411

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           GSAKQ R+   QA+LPLRGK+LNV  A  + +  N++I++++QA+G     ++    LRY
Sbjct: 412 GSAKQGRDSEFQAILPLRGKVLNVEKARIDTMLKNKEIINIIQAIGTGISEEFDISKLRY 471

Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEE 595
            K++IMTDADVDGAHI +LLLTFF++ M  LIE  H++   PPL++++ G    YA+ +E
Sbjct: 472 HKIVIMTDADVDGAHIRTLLLTFFFRHMRPLIENGHIYAAQPPLYKVSYGRNVKYAYSDE 531

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
              +I  + +     K  + R+KGLGEM   QL +T M+   RTLL+++++  +    + 
Sbjct: 532 ELNEITSKLE----TKPTLQRYKGLGEMNYEQLWDTTMNPETRTLLQIQLDDAI----EA 583

Query: 656 QDSIN 660
                
Sbjct: 584 DQIFT 588


>gi|312137523|ref|YP_004004859.1| DNA gyrase subunit b [Rhodococcus equi 103S]
 gi|311886862|emb|CBH46170.1| DNA gyrase subunit B [Rhodococcus equi 103S]
          Length = 678

 Score =  577 bits (1486), Expect = e-162,   Method: Composition-based stats.
 Identities = 245/689 (35%), Positives = 367/689 (53%), Gaps = 50/689 (7%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A      S+ Y ASSI +LEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +AGY
Sbjct: 2   AAQKSDKSNTYGASSITVLEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNSVDEAMAGY 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ +EV++  +G + VVD+GRGIPV  H       T+E+++T LHAGGKFD+  Y +SGG
Sbjct: 62  ASKVEVTMLEDGGIQVVDDGRGIPVAMH--ASGAPTVEVVMTQLHAGGKFDSDAYAVSGG 119

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVGISVVNALS ++ V +      +SQ +    P   ++ +          + F  DP
Sbjct: 120 LHGVGISVVNALSTKVEVDINVDGYRWSQTYEHAKPGPLVQGEPTTETGT--TVRFWADP 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP--------------- 258
           +IF     ++   + +  Q  A+L+  +    + ++   ++                   
Sbjct: 178 EIFET-TTYNFETVARRLQEMAFLNKGLTITLTDERVAEDEVTEDVVPVTAEAPKTATET 236

Query: 259 ------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
                       +   +++PGGL+ Y++     +  I + +     +  G     +E A+
Sbjct: 237 EEEAAAPKAPKVKSRVYHYPGGLEDYVRFINRTKQAIHNSVVGFTAKGTGH---ELEIAM 293

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLM 363
            W       + ++ NTI T EGGTHE G R ALT  +KKY   +     +   +  DD+ 
Sbjct: 294 QWNSGYSESVHTFANTINTHEGGTHEEGFRAALTSVVKKYAKDKKLVKDKDPELTGDDIR 353

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  ++   +
Sbjct: 354 EGLAAIISVKVAEPQFEGQTKTKLGNTEVKSFVQKACNENIAHWFEANPADAKTIVTKAV 413

Query: 424 ERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
             ++ R   RK RE V RK+A     LPGKLADC  N     E++IVEGDSAGGSAK  R
Sbjct: 414 SSAQARTAARKARELVRRKSATDIGGLPGKLADCRSNDPSKCEIYIVEGDSAGGSAKSGR 473

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           +   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K+++M 
Sbjct: 474 DSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDICKLRYHKIVLMA 533

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT--QGTKSVYAHDEEHKQKI 600
           DADVDG HIA+LLLT  ++ M  L+EQ H++L  PPL+++   +G    +A+ +  +  +
Sbjct: 534 DADVDGQHIATLLLTLLFRFMRPLVEQGHVYLAQPPLYKLKWQKGAAPDFAYSDRERDGL 593

Query: 601 LEEFKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
           LE     GK KI     I R+KGLGEM A +L ET MD + R L +V ++          
Sbjct: 594 LEAGLAAGK-KINKDDGIQRYKGLGEMNAKELWETTMDPSVRVLRQVTLDD----AAAAD 648

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           +  + LMG   + R  FI   A  +  + 
Sbjct: 649 ELFSVLMGEDVEARRSFITRNAKDVRFLD 677


>gi|291517729|emb|CBK71345.1| DNA gyrase subunit B [Bifidobacterium longum subsp. longum F8]
          Length = 712

 Score =  577 bits (1486), Expect = e-162,   Method: Composition-based stats.
 Identities = 250/702 (35%), Positives = 368/702 (52%), Gaps = 29/702 (4%)

Query: 8   LFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIG 67
           L      + Q  +   + +             A ++Y+AS +R+LEGLE VR+RPGMYIG
Sbjct: 17  LADETSKEEQLKAAAERINNAELTEGELDESMAPEHYEASDLRVLEGLEAVRIRPGMYIG 76

Query: 68  GTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNK 127
            T  + LHHL  E++DN++DE +AGYA+ IEV++  +  + VVD+GRGIPV+  P     
Sbjct: 77  STGPRGLHHLVYEIVDNSVDEALAGYASHIEVTILPDNGIRVVDDGRGIPVDEVP-GEGV 135

Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187
           S +E ++T LHAGGKF    Y +SGGLHGVGISVVNALS  + + V RQ   ++Q +   
Sbjct: 136 SGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHWTQTYIDQ 195

Query: 188 IPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
            P +PL++ E +      GT +TF  DPKIF     +D   L    Q  A+L+  +K   
Sbjct: 196 HPTAPLKQDEPMTEGESTGTSVTFWADPKIFETTI-YDFETLRSRFQQMAFLNKGLKISL 254

Query: 246 SCDKEI------------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
           + ++E              E     +   + +  G+K Y+   ++ R     E      E
Sbjct: 255 TDERENDQAGDEVAGDAADEPGAKHQTITYQYLNGIKDYVDYLVKVRKATPVEEDVISFE 314

Query: 294 -KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ- 350
            +      + E A+ W       + ++ NTI T EGGTHE G R ALT  + +YA     
Sbjct: 315 AEDLKLGISAELAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLVNRYARDKGI 374

Query: 351 -NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
              +  ++  DD+      ++SV +  P+F GQTKTKL + +A+  V+  + D    +  
Sbjct: 375 LKDKDENLSGDDVREGLTAVISVKLTNPQFEGQTKTKLGNSEAKTFVQRVMTDKLGDWFD 434

Query: 410 QNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFI 468
            +P EA  +++  IE S  RL  +K RE  R+ +I     +P KL DC  N     ELFI
Sbjct: 435 AHPNEAKNIIQKAIEASRARLAAKKARENTRRKSIFESAGMPDKLKDCQSNNPEECELFI 494

Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528
           VEGDSAGGSA Q RN   QA+LPLRGKILN   A  +++  +  I  L+ A+G      +
Sbjct: 495 VEGDSAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSDTIESLITAVGGGYGEDF 554

Query: 529 REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKS 588
               +RY KVIIM DADVDGAHIA+L LT F++ M  +I   ++++  PPL+R+      
Sbjct: 555 DISKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKWTKGP 614

Query: 589 V-YAHDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644
             + + +  + ++L E K +G+       I R+KGLGEM   +L ET MD   R L +V 
Sbjct: 615 HDFVYTDAERDRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVH 674

Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           I           ++ + LMG + + R  FIQ  A  +  +  
Sbjct: 675 IED----AAAADETFSMLMGDEVEPRRLFIQRNAKNVRWIDA 712


>gi|213690934|ref|YP_002321520.1| DNA gyrase, B subunit [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213522395|gb|ACJ51142.1| DNA gyrase, B subunit [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 709

 Score =  577 bits (1486), Expect = e-162,   Method: Composition-based stats.
 Identities = 250/702 (35%), Positives = 369/702 (52%), Gaps = 29/702 (4%)

Query: 8   LFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIG 67
           L      + Q  +   + +             A ++Y+AS +R+LEGLE VR+RPGMYIG
Sbjct: 14  LADETSKEEQLKAAAERINNAELTEGELDESMAPEHYEASDLRVLEGLEAVRIRPGMYIG 73

Query: 68  GTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNK 127
            T  + LHHL  E++DN++DE +AGYA+ IEVS+  +  + VVD+GRGIPV+  P     
Sbjct: 74  STGPRGLHHLVYEIVDNSVDEALAGYASHIEVSILPDNGIRVVDDGRGIPVDEVP-GEGV 132

Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187
           S +E ++T LHAGGKF    Y +SGGLHGVGISVVNALS  + + V RQ   ++Q +   
Sbjct: 133 SGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHWTQTYIDQ 192

Query: 188 IPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
            P +PL++ E +      GT +TF  DPKIF     +D   L    Q  A+L+  +K   
Sbjct: 193 HPTAPLKQGEPMTEGESTGTSVTFWADPKIFETTI-YDFETLRSRFQQMAFLNKGLKISL 251

Query: 246 SCDKEI------------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
           + ++E              E     +   + +  G+K Y++  ++ R     E      E
Sbjct: 252 TDERENDQAGDEVAGDAADEPGAKHQTVTYQYLNGIKDYVEYLVKVRKATPVEEDVISFE 311

Query: 294 -KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ- 350
            +      + E A+ W       + ++ NTI T EGGTHE G R ALT  + +YA     
Sbjct: 312 AEDLKLGISAELAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLVNRYARDKGI 371

Query: 351 -NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
              +  ++  DD+      ++SV +  P+F GQTKTKL + +A+  V+  + D    +  
Sbjct: 372 LKDKDENLSGDDVREGLTAVISVKLTNPQFEGQTKTKLGNSEAKTFVQRVMTDKLGDWFD 431

Query: 410 QNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFI 468
            +P EA  +++  IE S  RL  +K RE  R+ +I     +P KL DC  +     ELFI
Sbjct: 432 AHPNEAKNIIQKAIEASRARLAAKKARENTRRKSIFESAGMPDKLKDCQSSNPEECELFI 491

Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528
           VEGDSAGGSA Q RN   QA+LPLRGKILN   A  +++  +  I  L+ A+G      +
Sbjct: 492 VEGDSAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSDTIESLITAVGGGYGEDF 551

Query: 529 REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKS 588
               +RY KVIIM DADVDGAHIA+L LT F++ M  +I   ++++  PPL+R+      
Sbjct: 552 DISKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKWTKGP 611

Query: 589 V-YAHDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644
             + + +  + ++L E K +G+       I R+KGLGEM   +L ET MD   R L +V 
Sbjct: 612 HDFVYTDAERDRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVH 671

Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           I           ++ + LMG + + R  FIQ  A  +  +  
Sbjct: 672 IED----AAAADETFSMLMGDEVEPRRLFIQRNAKNVRWIDA 709


>gi|237733416|ref|ZP_04563897.1| DNA gyrase subunit B gyrB [Mollicutes bacterium D7]
 gi|229383451|gb|EEO33542.1| DNA gyrase subunit B gyrB [Coprobacillus sp. D7]
          Length = 641

 Score =  577 bits (1486), Expect = e-162,   Method: Composition-based stats.
 Identities = 247/655 (37%), Positives = 363/655 (55%), Gaps = 19/655 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +    +YD S I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AGYA
Sbjct: 1   MSEEKVEHSYDESDIQVLEGLEAVRKRPGMYIGTTSIRGLHHLVWEIVDNSIDEALAGYA 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I V L  +  + V+D+GRG+P   H K    ST+E I T LHAGGKF    Y++SGGL
Sbjct: 61  SHIRVILKDDDVVQVIDDGRGMPTGTHAK-TGISTVETIFTVLHAGGKFGGGGYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS+ L V V R    + Q+F  G   +   K     +  GT +TF+ D  
Sbjct: 120 HGVGASVVNALSEWLEVNVHRDGHEYYQRFENGGKPAGELKIIGDSDITGTIVTFKADKI 179

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   +D   L +  +  A+L+  ++      +   ++        +Y+ GG+K Y+ 
Sbjct: 180 IFKEGTVYDYDTLRQRIRELAFLNKGLRLSLEDQRNGVDRKHE-----YYYEGGIKEYVA 234

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  EI   +         T+E  + + +     I S+CN I T EGGTHE G
Sbjct: 235 YINKNKTPIHEEIIYVE---DMQQEITIEVGMQYNDGYQSNIYSFCNNINTHEGGTHEEG 291

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R+ALTR I  YA+      K   ++  DD+      I+SV   +P++ GQTKTKL + +
Sbjct: 292 FRLALTRVINNYAKSKGLLKKDEEALSGDDVREGLTAIISVKHPDPQYEGQTKTKLGNAE 351

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLP 450
            ++   N +    D +L++NP  A  +++  I         ++ +    RK  +    LP
Sbjct: 352 VRKIASNIISASLDKFLLENPDTAKIIVDKAIVAARARMAAKKAREMTRRKNVLEVSNLP 411

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS   A   E+FIVEG+SAGGSAK  R+R  QA+LPLRGKILNV  +  EKI  N
Sbjct: 412 GKLADCSSKDASECEIFIVEGNSAGGSAKMGRDRRIQAILPLRGKILNVEKSRLEKILGN 471

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
            +I  ++ A G     ++  + LRY K++IMTDADVDG HI  L+LTF Y+ +  L+E  
Sbjct: 472 AEIRSMITAFGTGIGEEFNLDKLRYHKIVIMTDADVDGGHIRILMLTFLYRYLRPLVEGG 531

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
            ++   PPL+ +  G    Y + +E    +  +  +    K  I R+KGLGEM A QL E
Sbjct: 532 FVYAAQPPLYLLKHGKDEYYCYSDEELDDLKTKIGE--GAKYSIQRYKGLGEMNAEQLWE 589

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T MD  KR L ++++++ +    +     + LMG K + R +FIQE A ++ D+ 
Sbjct: 590 TTMDPEKRILNQIDLDEAM----EADMIFDMLMGEKVEPRREFIQENAKYVTDLD 640


>gi|300780154|ref|ZP_07090010.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Corynebacterium
           genitalium ATCC 33030]
 gi|300534264|gb|EFK55323.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Corynebacterium
           genitalium ATCC 33030]
          Length = 686

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 257/691 (37%), Positives = 366/691 (52%), Gaps = 60/691 (8%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NYDASSI ILEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AGYA+ +EV+L 
Sbjct: 7   NYDASSITILEGLEAVRKRPGMYIGSTGSRGLHHLVWEVVDNSVDEAMAGYADKVEVTLL 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G + VVDNGRGIPVE HP      T+++++T LHAGGKFD+ +Y +SGGLHGVGISVV
Sbjct: 67  ADGGVQVVDNGRGIPVEMHP--SGAPTVQVVMTQLHAGGKFDSESYAVSGGLHGVGISVV 124

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  +   + R    + Q F+  IP   +E         GT I F PD +IF     F
Sbjct: 125 NALSTRVEADIKRDGKHWYQNFTNAIPEELVE--GDNARGTGTSIRFWPDAEIFETV-EF 181

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAE----------------------------- 253
           D   + +  Q  A+L+  +      ++   E                             
Sbjct: 182 DYDIIARRLQEMAFLNKGLTITLKDERVSDEELELEAIAEEGDTAQVVEGDSFADEDVVD 241

Query: 254 -----------KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
                      K    +K  +++P GL  Y+      ++ I   I   + +        +
Sbjct: 242 KQEDGDVAPTSKKKREKKVTYHYPNGLVDYVNYLNRTKTAIHPTIVGFEAKGTDH---EL 298

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359
           E A+ W       + ++ NTI T EGGTHE G R ALT  + +YA   +    +  ++  
Sbjct: 299 EIAMQWNGGFKESVHTFANTINTHEGGTHEEGFRAALTSLMNRYAREHKLIKDKDPNLTG 358

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD       ++SV + +P+F GQTKTKL + + +  V+ A+ +  + +   NP EA  ++
Sbjct: 359 DDCREGLAAVISVRVGDPQFEGQTKTKLGNSEIKGFVQRAVNEHLNDWFDANPAEAKVII 418

Query: 420 EWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
           +  +  S+ R   RK RE   RK+A     LPGKLADC       +ELFIVEGDSAGGSA
Sbjct: 419 KKAVSSSQAREAARKARESVRRKSATDLGGLPGKLADCRSKDPVASELFIVEGDSAGGSA 478

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538
           KQ R+   QA+LPLRGKILNV  A  +++ +N ++  ++ ALG     ++    LRY K+
Sbjct: 479 KQGRDSMYQAILPLRGKILNVEKARLDRVLSNNEVQAIITALGTGINDEFDISKLRYHKI 538

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ-GTKSVYAHDEEHK 597
           ++M DADVDG HIA+LLLT  Y+ M +LI   H+FL +PPL+++     +  YA+ +  +
Sbjct: 539 VLMADADVDGQHIATLLLTLLYRLMPELIGDGHVFLANPPLYKLKWHKGEPGYAYSDAER 598

Query: 598 QKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
              LEE    G+       I R+KGLGEM   +L ET +D   R L RVE+       + 
Sbjct: 599 DAELEEGLNEGRKINTDDGIQRYKGLGEMNPGELWETTLDPENRILRRVELED----AQR 654

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
             +  + LMG     R  FI  +A  +  + 
Sbjct: 655 ADELFSILMGDDVAARRSFITRKAKDVRFLD 685


>gi|242052563|ref|XP_002455427.1| hypothetical protein SORBIDRAFT_03g010630 [Sorghum bicolor]
 gi|241927402|gb|EES00547.1| hypothetical protein SORBIDRAFT_03g010630 [Sorghum bicolor]
          Length = 729

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 238/670 (35%), Positives = 375/670 (55%), Gaps = 25/670 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86
                S A   +  +  Y A+++++LE L+ VR RPGMYIG T  + LHHL  E++DNA+
Sbjct: 73  ASTTASEAMHEKRVAAEYTAANVQVLEALDGVRTRPGMYIGSTGPRGLHHLVYEILDNAV 132

Query: 87  DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA--GGKFD 144
           DE  AG+A+ I+V L  +  ++V DNGRGIP + HP+   KS +E +LT +HA       
Sbjct: 133 DEGQAGHASKIDVVLHDDNSVSVTDNGRGIPTDMHPQ-TKKSCVETVLTLMHAGGKFGGS 191

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP---LEKKEKVRN 201
            S Y +SGGLHGVG+SVVNALS+ L VTV R    + Q +SRG P +P   +    +   
Sbjct: 192 KSGYSVSGGLHGVGLSVVNALSEALEVTVWRDGNKYRQSYSRGKPTTPLSSITLTGETSP 251

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           ++GT I F PD  IF     FD   +    +  A+L+  +    +      E+    +  
Sbjct: 252 RQGTSIRFWPDKDIFTTTIDFDFNTISSRIRELAFLNPELTITLT-----KEEGHTVQHN 306

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
           E+ + GGL  Y++    ++  +       + E  G     V    +    +  +  Y N+
Sbjct: 307 EYCYAGGLVEYVKWLNTDKKPLHDP-IAFRKELDGIT-VDVSLQWSSDSYSDTVLGYANS 364

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I T +GGTH  GL+ +LTR I  +A+ ++    + I++  + +      ++SV +  PEF
Sbjct: 365 IRTIDGGTHIDGLKASLTRTINNFAKKSKTIKDKDITLSGEHVREGMTCVISVKVPSPEF 424

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-V 438
            GQTKT+L + + +R VE A+++    YL  +P     +L   +   +  L  ++ RE V
Sbjct: 425 EGQTKTRLGNPEVRRIVEQAVQENLTEYLELHPDVLDSILSKSLNALKASLAAKRARELV 484

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
             K+ ++   +PGKLADC+      +E+FIVEGDSAGGSAKQ R+R  QA+LPLRGKILN
Sbjct: 485 RSKSVLKSSSIPGKLADCASTNPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILN 544

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLT 557
           +       +  N++I +L+ ALG   + +  +++ LRY K++I+TDADVDGAHI +LLLT
Sbjct: 545 IERRDEAAMYKNEEIQNLILALGLGVKGEDFKKEALRYHKIVILTDADVDGAHIRTLLLT 604

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
           FF++    L ++  +++  PPL+++ +G ++ Y +D+   ++I+  F  +      I RF
Sbjct: 605 FFFRYQRALFDEGCIYVGVPPLYKVERGKQAHYCYDDADLKEIVNTFPPN--ASYHIQRF 662

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           KGLGEM+  QL ET MD  +R L ++++        +     + LMG++ + R + IQE 
Sbjct: 663 KGLGEMMPVQLWETTMDPERRLLKQLKVED----AAEANVVFSSLMGSRVEYRKQLIQEA 718

Query: 678 ASFI--DDVG 685
           AS I  D + 
Sbjct: 719 ASTISMDQLD 728


>gi|329944735|ref|ZP_08292814.1| DNA gyrase, B subunit [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328529871|gb|EGF56761.1| DNA gyrase, B subunit [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 675

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 251/679 (36%), Positives = 372/679 (54%), Gaps = 33/679 (4%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           +  + + + +Y AS I +LEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +AGY
Sbjct: 2   SDQDATVNHDYGASDITVLEGLEAVRKRPGMYIGSTGERGLHHLVYEVVDNSVDEALAGY 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
            + IEV++  +G + V DNGRGIPV+ HP   ++ T+E+++T LHAGGKF    Y +SGG
Sbjct: 62  CDHIEVTILADGGVRVSDNGRGIPVDEHP-TEHRPTVEVVMTILHAGGKFGGGGYAVSGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVGISVVNALS  +   V RQ  ++   F+ G        K +     GT  TF PDP
Sbjct: 121 LHGVGISVVNALSTRVDTEVRRQGFVWRMSFADGGRPITELVKGEATEDTGTTQTFYPDP 180

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP--------------- 258
            IF     FD   L +  Q  A+L+  ++   + ++   +  G                 
Sbjct: 181 SIFET-VDFDYETLRRRFQQMAFLNKGLRITLTDERVGVQDAGDEITGDDSAPDAPEVGF 239

Query: 259 EKEEFYFPGGLKTYLQTKLENR--SLISSEIFTGKTEKK--GTHRGTVEWAIAWCEEN-P 313
             + + +  GL+ Y+    +++   L+  EI   + E+    TH  ++E A+ W      
Sbjct: 240 RTDSYCYEHGLRDYVAFLNKSKKAELVHPEIIDFEAEQTLGETHSISLEIAMQWTSSYSE 299

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
            + +Y NTI T EGGTHE G R ALT  + KYA       +R  ++  DD+      ++S
Sbjct: 300 SVHTYANTINTTEGGTHEEGFRTALTTLVNKYARDRGLLKERDDNLTGDDIREGLTAVIS 359

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V + EP+F GQTKTKL + +A+  V+  +      +L  +P +A  ++    + +  RL 
Sbjct: 360 VKLSEPQFEGQTKTKLGNTEARTFVQQTVYGQLGDWLDSHPSDARAIITKASQAAAARLA 419

Query: 432 RRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            RK RE  R+   +    +PGKL DCS  IA  +E+FIVEGDSAGGSA   R+  +QA++
Sbjct: 420 ARKAREATRRKGVLESASMPGKLRDCSSKIAEESEIFIVEGDSAGGSAVGGRDPEHQAIM 479

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           P+RGKILNV  A  ++  ++  I  L+ A G      +    LRY K++IM DADVDG H
Sbjct: 480 PIRGKILNVEKARLDRALSSDTIRSLITAFGTGIGEDFDLTKLRYGKIVIMADADVDGQH 539

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGK 609
           IA+LLLT  ++ M  LIE  H ++  PPL+R+     +  +A+ +  + K+L   +  G+
Sbjct: 540 IATLLLTLLFRYMRPLIEHGHTYIAMPPLYRLKWSNAEHEFAYSDAERDKLLAVGQDKGR 599

Query: 610 GKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK 666
              +   I R+KGLGEM   +L ET MD   R L +V +++      D  ++   LMG  
Sbjct: 600 RLPKDGGIQRYKGLGEMNDHELWETTMDPTTRILKQVTLDE----AADADETFAILMGDD 655

Query: 667 ADERFKFIQERASFIDDVG 685
            ++R  FIQ  AS +  + 
Sbjct: 656 VEQRRSFIQRNASDVRFLD 674


>gi|317482363|ref|ZP_07941383.1| DNA gyrase, subunit B [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916243|gb|EFV37645.1| DNA gyrase, subunit B [Bifidobacterium sp. 12_1_47BFAA]
          Length = 712

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 248/702 (35%), Positives = 368/702 (52%), Gaps = 29/702 (4%)

Query: 8   LFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIG 67
           L      + Q  +   + +             A ++Y+AS +R+LEGLE VR+RPGMYIG
Sbjct: 17  LADETSKEEQLKAAAERINNAELTEGELDESMAPEHYEASDLRVLEGLEAVRIRPGMYIG 76

Query: 68  GTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNK 127
            T  + LHHL  E++DN++DE +AGYA+ IE+++  +  + VVD+GRGIPV+  P     
Sbjct: 77  STGPRGLHHLVYEIVDNSVDEALAGYASHIEITILPDNGIRVVDDGRGIPVDEVP-GEGV 135

Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187
           S +E ++T LHAGGKF    Y +SGGLHGVGISVVNALS  + + V RQ   ++Q +   
Sbjct: 136 SGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHWTQTYIDQ 195

Query: 188 IPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
            P +PL++ E +      GT +TF  DPKIF     +D   L    Q  A+L+  +K   
Sbjct: 196 HPTAPLKQGEPMTEGESTGTSVTFWADPKIFETTI-YDFETLRSRFQQMAFLNKGLKISL 254

Query: 246 SCDKEI------------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
           + ++E              E     +   + +  G+K Y+   ++ R     E      E
Sbjct: 255 TDERENDQAGDEVAGDAADEPGAKHQTVTYQYLNGIKDYVDYLVKVRKATPVEEDVISFE 314

Query: 294 -KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ- 350
            +      + E A+ W       + ++ NTI T EGGTHE G R ALT  + +YA     
Sbjct: 315 AEDLKLGISAELAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLVNRYARDKGI 374

Query: 351 -NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
              +  ++  DD+      ++SV +  P+F GQTKTKL + +A+  V+  + D    +  
Sbjct: 375 LKDKDENLSGDDVREGLTAVISVKLTNPQFEGQTKTKLGNSEAKTFVQRVMTDKLGDWFD 434

Query: 410 QNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFI 468
            +P EA  +++  IE S  RL  +K RE  R+ +I     +P KL DC  +     ELFI
Sbjct: 435 AHPAEAKNIIQKAIEASRARLAAKKARENTRRKSIFESAGMPDKLKDCQSSNPEECELFI 494

Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528
           VEGDSAGGSA Q RN   QA+LPLRGKILN   A  +++  +  I  L+ A+G      +
Sbjct: 495 VEGDSAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSDTIESLITAVGGGYGEDF 554

Query: 529 REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKS 588
               +RY KVIIM DADVDGAHIA+L LT F++ M  +I   ++++  PPL+R+      
Sbjct: 555 DISKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKWTKGP 614

Query: 589 V-YAHDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644
             + + +  + ++L E K +G+       I R+KGLGEM   +L ET MD   R L +V 
Sbjct: 615 HDFVYTDAERDRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVH 674

Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           I           ++ + LMG + + R  FIQ  A  +  +  
Sbjct: 675 IED----AAAADETFSMLMGDEVEPRRLFIQRNAKNVRWIDA 712


>gi|116629641|ref|YP_814813.1| DNA topoisomerase IV subunit B [Lactobacillus gasseri ATCC 33323]
 gi|116095223|gb|ABJ60375.1| DNA topoisomerase IV subunit B [Lactobacillus gasseri ATCC 33323]
          Length = 661

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 240/658 (36%), Positives = 355/658 (53%), Gaps = 33/658 (5%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
                 + +YD SSI+IL GLE VR RPGMYIG TD   L+ L  E++DN++DE +AGY 
Sbjct: 11  AKTNKTTSSYDDSSIQILHGLEAVRKRPGMYIGSTDRHGLNQLVYEIVDNSVDEAMAGYG 70

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             I V++  +  +TV D GRG+P   H       T+E+ILT LHAGGKF    Y+ SGGL
Sbjct: 71  KEINVTIHKDNSITVQDFGRGMPTGMH--ASGIPTIEVILTVLHAGGKFTEKNYQTSGGL 128

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDP 213
           HGVG SVVNALS  L V V R    + ++F   G P+  L+   K ++K GT ITF+PD 
Sbjct: 129 HGVGSSVVNALSSYLKVRVVRDGQAYEEEFENGGHPIGTLKHLGKTKDKNGTTITFKPDA 188

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF     ++   + +  +  A+L   VK   + ++E          ++F +  G+K+++
Sbjct: 189 TIFST-TTYNYETIQERIRESAFLLKGVKFTLTDEREPE------HHDKFLYEDGIKSFV 241

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHES 332
               E++  +  ++F    ++ G     VE+A  + +   E   S+ N + T +GG+HE+
Sbjct: 242 SYLNEDKDTMG-DVFYFSGKQNGI---EVEFAGQYNDGYSENFVSFVNNVRTADGGSHEA 297

Query: 333 GLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREP--EFAGQTKTKLV 388
           G R   T+    YA+     +         D       +LSV I E   EF GQTK KL 
Sbjct: 298 GARSGFTKAFNDYAKKQGLLKNKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLG 357

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RK 446
           +  A+  V++ + +   +YL++N   A  L++   +  + R   +K R+ +R      +K
Sbjct: 358 TPQARSVVDSIVYEQLSYYLMENGEFAQSLVQKAQKARDAREAAKKARDESRSGKKRRKK 417

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             L GKL           ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + 
Sbjct: 418 EILSGKLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQD 477

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           I  N++I  ++  +G    S ++ +D  Y+K+IIMTDAD DGAHI  LLLTFFY+ M  +
Sbjct: 478 IFKNEEINTMIHTIGAGVGSDFQIKDANYDKIIIMTDADTDGAHIQILLLTFFYRYMRPM 537

Query: 567 IEQKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
           +E   +++  PPL+++ +G     K  YA  +E   +  ++  K       + RFKGLGE
Sbjct: 538 VEAGRVYIALPPLYKLQKGNGAKAKIKYAWTDEELSEDSKDMGK----GFALQRFKGLGE 593

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           M A QL ET M+   RTL+RV+I+      +  +  +  LMG K   R K+I E   F
Sbjct: 594 MNADQLWETTMNPETRTLIRVKIDD----AQLAEKRVTTLMGDKVAPRRKWIDENVKF 647


>gi|313897377|ref|ZP_07830920.1| DNA topoisomerase IV, B subunit [Clostridium sp. HGF2]
 gi|312957747|gb|EFR39372.1| DNA topoisomerase IV, B subunit [Clostridium sp. HGF2]
          Length = 643

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 236/650 (36%), Positives = 358/650 (55%), Gaps = 29/650 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A + YD SSI+IL+GL+ VR RPGMYIG TD + LHHL  E++DN++DE + G+ + I +
Sbjct: 2   AENAYDGSSIQILDGLDAVRKRPGMYIGSTDSRGLHHLVWEIVDNSIDEALNGHGDTIRI 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD-NSTYEISGGLHGVG 158
           +++ +  + V D GRG+PV+ H       T+++I T LHAGGKF     Y+ SGGLHGVG
Sbjct: 62  TIEKDNVICVEDEGRGMPVDMH--ASGVPTVQVIYTVLHAGGKFSTEGGYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS+ + VTV R   I+   FS G       +     NK G+++ F+ D  +F  
Sbjct: 120 ASVVNALSEWVEVTVHRDGKIYRMSFSDGGREVSKLEVIGKTNKTGSKVRFKADKTMFST 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              +   ++ +  Q  A+L   +K     ++E  E+      E +++  GL  +++   E
Sbjct: 180 T-KYSFHQIAERAQEDAFLLEGLKLVVRDEREGKERE-----EVYHYEQGLVAFMEYLHE 233

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           ++ +    +         ++   V+ A  + +E    I S+ N + T +GGTHE+G + A
Sbjct: 234 DKQVFHKPVAFSGM----SNEIKVDCAFQYTDEYQENIFSFVNIVRTKDGGTHETGAKNA 289

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
            T+   +YA       ++  +    D+      ILS+ + E   +F GQTK KL + +A+
Sbjct: 290 FTKVFNEYARKNGLLKEKDKNFEGSDVREGLTIILSLGVPENLLQFEGQTKGKLGTAEAK 349

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL---RLP 450
             V++ + +    +L +N   A  L++ +   S  R   RK RE  RK   R      L 
Sbjct: 350 AAVDSIVSEKLSFFLEENKELAITLIKKMQRASTAREAARKAREDARKGKTRGKTEKILS 409

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLA      A   EL++VEGDSAGGSAKQ R+   QA+LPLRGK+LN   A    I  N
Sbjct: 410 GKLASAQSKDARKKELYLVEGDSAGGSAKQGRDSKYQAILPLRGKVLNTEKASITNIEKN 469

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           +++  ++ ALG    + +  ED  Y KVIIMTDAD DGAHI  LLLTFFY+ M +LIEQ 
Sbjct: 470 EELNTIIHALGAGVGANFHAEDSNYHKVIIMTDADTDGAHIQILLLTFFYRYMRELIEQG 529

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
            +++  PPL+++ +G +  YA  +E   ++ + F K       + R+KGLGEM A QL +
Sbjct: 530 MVYIALPPLYKLQKGKEIQYAWTDEELDELRKTFPK----GFSLQRYKGLGEMNADQLWD 585

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           T M    RTL++V I+  +      +  ++ LMG KA+ R  +I+E  SF
Sbjct: 586 TTMCPETRTLIQVTIDDAVV----AEKRVSVLMGDKANLRRDWIEENVSF 631


>gi|184199651|ref|YP_001853858.1| DNA gyrase subunit B [Kocuria rhizophila DC2201]
 gi|183579881|dbj|BAG28352.1| DNA gyrase subunit B [Kocuria rhizophila DC2201]
          Length = 686

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 243/690 (35%), Positives = 354/690 (51%), Gaps = 45/690 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
               S    Y AS I +LEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AGY 
Sbjct: 2   ATEDSPQHEYGASDITVLEGLEAVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALAGYC 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + IEV+L  +G + V DNGRGIPV+ HP    K T+E+++T LHAGGKF    Y +SGGL
Sbjct: 62  DHIEVTLQADGGVRVSDNGRGIPVDMHP-TEGKPTVEVVMTILHAGGKFGGGGYAVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVGISVVNALS ++   V RQ  ++   F+ G        K +   + GT   F PD +
Sbjct: 121 HGVGISVVNALSRQVDTEVRRQGHVWRMSFANGGRPQGELVKGEATEETGTTQVFYPDAE 180

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI----------------- 257
           IF     FD   L    Q  A+L+  ++   + ++   E                     
Sbjct: 181 IFETV-DFDFETLRARFQQMAFLNKGLRITLTDERASDETGEEIAGDTPSDASGPLEGQD 239

Query: 258 -------------PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKGTHRGTVE 303
                          +  + +  GL  Y+     ++            E      + ++E
Sbjct: 240 GGTAGGDDAAAAGARQVVYCYEDGLLDYVTFLNSSKKADLIHQDVISLEVDDPDKKMSLE 299

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISD 360
            A+ W       + +Y NTI T EGGTHE G R ALT  I +YA   +    +  ++  +
Sbjct: 300 LAMQWTTAFNESVHTYANTINTHEGGTHEEGFRTALTTLINRYARENKLLRDKDDNLTGE 359

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D+      ++S+ + EP+F GQTKTKL + +A+  V+  + + F  +L +NP  A  ++ 
Sbjct: 360 DVREGLTAVISIKLSEPQFEGQTKTKLGNSEAKTFVQREMFELFGAWLERNPNPAKDIIR 419

Query: 421 WVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
             I  S+ RL  RK RE  R+  +     +PGKL DCS      +E++IVEGDSAGGSA 
Sbjct: 420 KAIYASQARLAARKARETTRRKGLLESGGMPGKLKDCSSKDPTLSEIYIVEGDSAGGSAV 479

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
           Q R+ ++QA+LPLRGKILNV  A  ++  +N ++  ++ A G      +  +  RY K++
Sbjct: 480 QGRDPAHQAILPLRGKILNVERARLDRALSNAEVQSMITAFGAGIGDDFDIDKARYHKIV 539

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQ 598
           +M DADVDG HI +LLLT  ++ M  LIE  +++L  PPL+RI        Y   +  + 
Sbjct: 540 LMADADVDGQHITTLLLTLLFRFMRPLIEHGYVYLAQPPLYRIKWSNAPHDYVFSDAERD 599

Query: 599 KILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             L +     +   +   I R+KGLGEM  ++L ET MD   RTLL+V ++         
Sbjct: 600 AALAKGLAENRRLPKDNGIQRYKGLGEMDYTELWETTMDPEHRTLLQVTMDD----AAAA 655

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
               + LMG   + R +FIQ+ A  I  + 
Sbjct: 656 DQIFSVLMGEDVESRREFIQQNAKDIRFLD 685


>gi|23335943|ref|ZP_00121174.1| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), B subunit [Bifidobacterium longum DJO10A]
          Length = 712

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 249/702 (35%), Positives = 368/702 (52%), Gaps = 29/702 (4%)

Query: 8   LFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIG 67
           L      + Q  +   + +             A ++Y+AS +R+LEGLE VR+RPGMYIG
Sbjct: 17  LADETSKEEQLKAAAERINNAELTEGELDESMAPEHYEASDLRVLEGLEAVRIRPGMYIG 76

Query: 68  GTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNK 127
            T  + LHHL  E++DN++DE +AGYA+ IE+++  +  + VVD+GRGIPV+  P     
Sbjct: 77  STGPRGLHHLVYEIVDNSVDEALAGYASHIEITILPDNGIRVVDDGRGIPVDEVP-GEGV 135

Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187
           S +E ++T LHAGGKF    Y +SGGLHGVGISVVNALS  + + V RQ   ++Q +   
Sbjct: 136 SGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHWTQTYIDQ 195

Query: 188 IPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
            P +PL++ E +      GT +TF  DPKIF     +D   L    Q  A+L+  +K   
Sbjct: 196 HPTAPLKQGEPMTEGESTGTSVTFWADPKIFETTI-YDFETLRSRFQQMAFLNKGLKISL 254

Query: 246 SCDKEI------------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
           + ++E              E     +   + +  G+K Y+   ++ R     E      E
Sbjct: 255 TDERENDQAGDEVAGDAADEPGAKHQTVTYQYLNGIKDYVDYLVKVRKATPVEEDVISFE 314

Query: 294 -KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ- 350
            +      + E A+ W       + ++ NTI T EGGTHE G R ALT  + +YA     
Sbjct: 315 AEDLKLGISAELAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLVNRYARDKGI 374

Query: 351 -NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
              +  ++  DD+      ++SV +  P+F GQTKTKL + +A+  V+  + D    +  
Sbjct: 375 LKDKDENLSGDDVREGLTAVISVKLTNPQFEGQTKTKLGNSEAKTFVQRVMTDKLGDWFD 434

Query: 410 QNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFI 468
            +P EA  +++  IE S  RL  +K RE  R+ +I     +P KL DC  N     ELFI
Sbjct: 435 AHPAEAKNIIQKAIEASRARLAAKKARENTRRKSIFESAGMPDKLKDCQSNNPEECELFI 494

Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528
           VEGDSAGGSA Q RN   QA+LPLRGKILN   A  +++  +  I  L+ A+G      +
Sbjct: 495 VEGDSAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSDTIESLITAVGGGYGEDF 554

Query: 529 REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKS 588
               +RY KVIIM DADVDGAHIA+L LT F++ M  +I   ++++  PPL+R+      
Sbjct: 555 DISKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKWTKGP 614

Query: 589 V-YAHDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644
             + + +  + ++L E K +G+       I R+KGLGEM   +L ET MD   R L +V 
Sbjct: 615 HDFVYTDAERDRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVH 674

Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           I           ++ + LMG + + R  FIQ  A  +  +  
Sbjct: 675 IED----AAAADETFSMLMGDEVEPRRLFIQRNAKNVRWIDA 712


>gi|306823992|ref|ZP_07457366.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Bifidobacterium
           dentium ATCC 27679]
 gi|304552990|gb|EFM40903.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Bifidobacterium
           dentium ATCC 27679]
          Length = 704

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 251/705 (35%), Positives = 376/705 (53%), Gaps = 28/705 (3%)

Query: 4   DSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPG 63
              DL +    +S  ++++ +   +  +     +  + ++YDAS +R+LEGLE VR+RPG
Sbjct: 6   SVADLDADSLNESAENTQEDQIQNDQLEDAQLDDSLSPEHYDASDLRVLEGLEAVRIRPG 65

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIG T  + LHHL  E++DN++DE +AGYA+ IEV++  +G + VVD+GRGIPV+  P 
Sbjct: 66  MYIGSTGPRGLHHLVYEIVDNSVDEALAGYASHIEVTILPDGGVRVVDDGRGIPVDEVP- 124

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
               S +E ++T LHAGGKF    Y +SGGLHGVGISVVNALS  + + V RQ   ++Q 
Sbjct: 125 GEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHWTQT 184

Query: 184 FSRGIPLSPLEKKEKV--RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241
           +    P + L K E +      GT +TF  D KIF     +D   L    Q  A+L+  +
Sbjct: 185 YVDQKPTARLAKGEPMAEGESTGTSVTFWADGKIFET-TTYDFETLRNRFQQMAFLNKGL 243

Query: 242 KTCWSCDKEI-----------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
           K   +  +E             E     +   + +  G+K Y+   +++R     E    
Sbjct: 244 KLSLTDLREPDQAGDEVAGELDETETKHQTVTYQYNEGIKDYVGYLVKSRKATPVEEDVI 303

Query: 291 KTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
             E +      + E A+ W       + ++ NTI T EGGTHE G R ALT  I +YA  
Sbjct: 304 DFEAEDLKIGISAEIAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLINRYARE 363

Query: 349 TQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
                 +  ++  DD+      ++SV +  P+F GQTKTKL + +A+  V+  + D    
Sbjct: 364 KNILKDKDENLSGDDVREGLTAVVSVKLTTPQFEGQTKTKLGNSEAKTFVQRVMTDKLGD 423

Query: 407 YLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTE 465
           +   +P EA  +++  IE S  R+  +K RE  R+ +I     +P KL DC  N     E
Sbjct: 424 WFDAHPSEAKNIIQKAIEASRARIAAKKARENTRRKSIFESAGMPDKLKDCQSNNPEECE 483

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
           LFIVEGDSAGGSA Q RN   QA+LPLRGKILN   A  +++  ++ I  L+ A+G    
Sbjct: 484 LFIVEGDSAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSETIESLITAVGGGYG 543

Query: 526 SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG 585
             +    +RY KVIIM DADVDGAHIA+L LT F++ M  +I   ++++  PPL+R+   
Sbjct: 544 EDFDLSKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKWT 603

Query: 586 TKSV-YAHDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
             +  + + +  + ++L E K  G+       I R+KGLGEM   +L ET MD   R L 
Sbjct: 604 KGAHDFVYTDAERDRVLAEGKAAGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILK 663

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           +V+I           ++ + LMG + + R  FIQ  A+ +  +  
Sbjct: 664 QVQIED----AAAADETFSMLMGDEVEPRRLFIQRNANKVSWIDA 704


>gi|327183630|gb|AEA32077.1| DNA topoisomerase IV subunit B [Lactobacillus amylovorus GRL 1118]
          Length = 648

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 247/654 (37%), Positives = 359/654 (54%), Gaps = 33/654 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ YD SSI+IL GLE VR RPGMYIG TD   L+ L  E++DN++DE +AG+   I+
Sbjct: 2   AKANTYDDSSIQILHGLEAVRKRPGMYIGSTDIHGLNQLVYEIVDNSVDEAMAGFGKEID 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +  +TV D GRG+P   H     K T+E+ILT LHAGGKF    Y+ SGGLHGVG
Sbjct: 62  VTIHKDNSVTVRDFGRGMPTGMHK--SGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
            SVVNALS  + V V R    + ++F  G  P+  L+   K ++K GT ITF+PD  IF 
Sbjct: 120 SSVVNALSSYMKVRVVRDGKGYEEEFKNGGHPVGTLKCVGKTKDKTGTTITFKPDQTIFS 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               +    + +  +  A+L   VK   + ++E          + F +  G+K+++    
Sbjct: 180 TT-KYKYETIQERIRESAFLLKGVKFVLTDEREPE------HHDVFQYDDGIKSFVSYLN 232

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRV 336
           E +    S++F  + ++ G     +E+A  + +   E   S+ N + T +GGTHESG R 
Sbjct: 233 EGK-GTISDVFYFEGKQDGI---EIEFAGQYSDGYSENLVSFVNNVRTGDGGTHESGARS 288

Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392
             TR    YA+      K+  +I   D       +LSV I E   EF GQTK KL +  A
Sbjct: 289 GFTRAFNDYAKKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQA 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLP 450
           +  V++ + +   +YL++N   A +L++      + R   +K R+ +R      +K  L 
Sbjct: 349 RSAVDSLVYEKMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLS 408

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + I  N
Sbjct: 409 GKLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKN 468

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    +++  +D  Y+KVIIMTDAD DGAHI  LLLTFFY+ M  +IE+ 
Sbjct: 469 EEINTMIYTIGAGVGTEFNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEKG 528

Query: 571 HLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +++  PPL+R+ +G     K  YA  +E     L E +K       + RFKGLGEM A 
Sbjct: 529 KVYIALPPLYRLQKGRGKKSKIQYAWTDEE----LAEDEKKMGRGYSLQRFKGLGEMNAE 584

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL +T MD   R L+RV+I+         +  +  LMG K   R K+I+E   F
Sbjct: 585 QLWQTTMDPESRMLIRVKIDD----AALAERRVTTLMGDKVAARRKWIEENVKF 634


>gi|227547507|ref|ZP_03977556.1| DNA topoisomerase (ATP-hydrolyzing) [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|227212022|gb|EEI79918.1| DNA topoisomerase (ATP-hydrolyzing) [Bifidobacterium longum subsp.
           infantis ATCC 55813]
          Length = 712

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 249/702 (35%), Positives = 368/702 (52%), Gaps = 29/702 (4%)

Query: 8   LFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIG 67
           L      + Q  +   + +             A ++Y+AS +R+LEGLE VR+RPGMYIG
Sbjct: 17  LADETSKEEQLKAAAERINNAELTEGELDESMAPEHYEASDLRVLEGLEAVRIRPGMYIG 76

Query: 68  GTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNK 127
            T  + LHHL  E++DN++DE +AGYA+ IE+++  +  + VVD+GRGIPV+  P     
Sbjct: 77  STGPRGLHHLVYEIVDNSVDEALAGYASHIEITILPDNGIRVVDDGRGIPVDEVP-GEGV 135

Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187
           S +E ++T LHAGGKF    Y +SGGLHGVGISVVNALS  + + V RQ   ++Q +   
Sbjct: 136 SGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHWTQTYIDQ 195

Query: 188 IPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
            P +PL++ E +      GT +TF  DPKIF     +D   L    Q  A+L+  +K   
Sbjct: 196 HPTAPLKQGEPMTEGESTGTSVTFWADPKIFETTI-YDFETLRSRFQQMAFLNKGLKISL 254

Query: 246 SCDKEI------------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
           + ++E              E     +   + +  G+K Y+   ++ R     E      E
Sbjct: 255 TDERENDQAGDEVAGDAADEPGAKHQTVTYQYLNGIKDYVDYLVKVRKATPVEEDVISFE 314

Query: 294 -KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ- 350
            +      + E A+ W       + ++ NTI T EGGTHE G R ALT  + +YA     
Sbjct: 315 AEDLKLGISAELAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLVNRYARDKGI 374

Query: 351 -NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
              +  ++  DD+      ++SV +  P+F GQTKTKL + +A+  V+  + D    +  
Sbjct: 375 LKDKDENLSGDDVREGLTAVISVKLTNPQFEGQTKTKLGNSEAKTFVQRVMTDKLGDWFD 434

Query: 410 QNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFI 468
            +P EA  +++  IE S  RL  +K RE  R+ +I     +P KL DC  N     ELFI
Sbjct: 435 AHPNEAKNIIQKAIEASRARLAAKKARENTRRKSIFESAGMPDKLKDCQSNNPEECELFI 494

Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528
           VEGDSAGGSA Q RN   QA+LPLRGKILN   A  +++  +  I  L+ A+G      +
Sbjct: 495 VEGDSAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSDTIESLITAVGGGYGEDF 554

Query: 529 REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKS 588
               +RY KVIIM DADVDGAHIA+L LT F++ M  +I   ++++  PPL+R+      
Sbjct: 555 DISKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKWTKGP 614

Query: 589 V-YAHDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644
             + + +  + ++L E K +G+       I R+KGLGEM   +L ET MD   R L +V 
Sbjct: 615 HDFVYTDAERDRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVH 674

Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           I           ++ + LMG + + R  FIQ  A  +  +  
Sbjct: 675 IED----AAAADETFSMLMGDEVEPRRLFIQRNAKNVRWIDA 712


>gi|238854274|ref|ZP_04644618.1| DNA topoisomerase IV, B subunit [Lactobacillus gasseri 202-4]
 gi|282851154|ref|ZP_06260521.1| DNA topoisomerase IV, B subunit [Lactobacillus gasseri 224-1]
 gi|311110716|ref|ZP_07712113.1| DNA topoisomerase IV, B subunit [Lactobacillus gasseri MV-22]
 gi|238833085|gb|EEQ25378.1| DNA topoisomerase IV, B subunit [Lactobacillus gasseri 202-4]
 gi|282557686|gb|EFB63281.1| DNA topoisomerase IV, B subunit [Lactobacillus gasseri 224-1]
 gi|311065870|gb|EFQ46210.1| DNA topoisomerase IV, B subunit [Lactobacillus gasseri MV-22]
          Length = 652

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 241/658 (36%), Positives = 355/658 (53%), Gaps = 33/658 (5%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
                 + +YD SSI+IL GLE VR RPGMYIG TD   L+ L  E++DN++DE +AGY 
Sbjct: 2   AKTNKTTSSYDDSSIQILHGLEAVRKRPGMYIGSTDRHGLNQLVYEIVDNSVDEAMAGYG 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             I V++  +  +TV D GRG+P   H       T+E+ILT LHAGGKF    Y+ SGGL
Sbjct: 62  KEINVTIHKDNSITVQDFGRGMPTGMH--ASGIPTIEVILTVLHAGGKFTEKNYQTSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDP 213
           HGVG SVVNALS  L V V R    + ++F   G P+  L+   K ++K GT ITF+PD 
Sbjct: 120 HGVGSSVVNALSSYLKVRVVRDGQAYEEEFENGGHPIGTLKHLGKTKDKNGTTITFKPDA 179

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF     ++   + +  +  A+L   VK   + ++E          +EF +  G+K+++
Sbjct: 180 TIFST-TTYNYETIQERIRESAFLLKGVKFTLTDEREPE------HHDEFLYEDGIKSFV 232

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHES 332
               E++  +  ++F    ++ G     VE+A  + +   E   S+ N + T +GG+HE+
Sbjct: 233 SYLNEDKDTMG-DVFYFSGKQNGI---EVEFAGQYNDGYSENFVSFVNNVRTADGGSHEA 288

Query: 333 GLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREP--EFAGQTKTKLV 388
           G R   T+    YA+     +         D       +LSV I E   EF GQTK KL 
Sbjct: 289 GARSGFTKAFNDYAKKQGLLKNKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLG 348

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RK 446
           +  A+  V++ + +   +YL++N   A  L++   +  + R   +K R+ +R      +K
Sbjct: 349 TPQARSVVDSIVYEQLSYYLMENGEFAQSLVQKAQKARDAREAAKKARDESRSGKKRRKK 408

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             L GKL           ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + 
Sbjct: 409 EILSGKLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQD 468

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           I  N++I  ++  +G    S ++ +D  Y+K+IIMTDAD DGAHI  LLLTFFY+ M  +
Sbjct: 469 IFKNEEINTMIHTIGAGVGSDFQIKDANYDKIIIMTDADTDGAHIQILLLTFFYRYMRPM 528

Query: 567 IEQKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
           +E   +++  PPL+++ +G     K  YA  +E   +  ++  K       + RFKGLGE
Sbjct: 529 VEAGRVYIALPPLYKLQKGNGAKAKIKYAWTDEELSEDSKDMGK----GFALQRFKGLGE 584

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           M A QL ET M+   RTL+RV+I+      +  +  +  LMG K   R K+I E   F
Sbjct: 585 MNADQLWETTMNPETRTLIRVKIDD----AQLAEKRVTTLMGDKVAPRRKWIDENVKF 638


>gi|225388933|ref|ZP_03758657.1| hypothetical protein CLOSTASPAR_02674 [Clostridium asparagiforme
           DSM 15981]
 gi|225044986|gb|EEG55232.1| hypothetical protein CLOSTASPAR_02674 [Clostridium asparagiforme
           DSM 15981]
          Length = 639

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 249/660 (37%), Positives = 356/660 (53%), Gaps = 35/660 (5%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A+  Y+A SI +LEGLE VR RPGMYIG    K L+HL  E++DNA+DE +AG+ + + V
Sbjct: 2   ANQTYNAESITVLEGLEAVRKRPGMYIGSVGTKGLNHLIYEIVDNAVDEHLAGFCSKVWV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L+ +G  TV DNGRGIPVE H K    S   ++L TLHAGGKFDN  Y+ SGGLHGVG 
Sbjct: 62  TLEADGSCTVRDNGRGIPVELHKK--GVSAERVVLATLHAGGKFDNEAYKTSGGLHGVGS 119

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGTRITFRPDPK 214
           SVVNALS  + V V R   I+   + +G+P+ PLE        K R   GT+I F PD +
Sbjct: 120 SVVNALSSHMDVKVYRDGCIYHDAYEKGLPVIPLENGLLPVIGKTRE-TGTQINFLPDDE 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     F A  L       AYL+  +   ++  +      G  E+  ++ P G+ +Y++
Sbjct: 179 IFER-TRFKADWLKSRLHETAYLNPNLMIFYANKRS-----GESEQITYHEPEGIVSYVK 232

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESG 333
                ++ +   I+     K    +  VE A+ + +   E    +CN I T EGGTH +G
Sbjct: 233 ELNTGKTAVHDPIYF----KGTVDKVEVEVALQFVDTFEENILGFCNNIFTQEGGTHLAG 288

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            +   T  I  YA       ++  +    D       +++V   +P F GQTKTKL S D
Sbjct: 289 FKTKFTAMINSYARELGILKEKDANFTGADTRNGMTAVVAVKHPDPIFEGQTKTKLASAD 348

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           A + V   + D    Y  +N      ++    + ++ R    K +      +       G
Sbjct: 349 ATKAVFAVVGDELQRYFDRNLEVLKGVIGCAEKSAKIRRAEEKAKTNMLTRSKFSFDSNG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLA+C    A   E+FIVEGDSAGGSAK ARNR  QA+LP+RGKILNV  A  +K+  N 
Sbjct: 409 KLANCESRDAEKCEIFIVEGDSAGGSAKTARNRMYQAILPIRGKILNVEKASMDKVLANA 468

Query: 512 QIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
           +I  ++ A GC       + +    LRY K+I+MTDADVDG+HI +LLLTF Y+ M +LI
Sbjct: 469 EIKTMINAFGCGFSEGYGNDFDITKLRYNKIILMTDADVDGSHIDTLLLTFLYRFMPELI 528

Query: 568 EQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
              H+++  PPLF++  +  +  Y +DE+     LE +++   G   + R+KGLGEM A 
Sbjct: 529 YDGHVYIAMPPLFKVIPKKGEEQYLYDEKE----LERYRRTHTGDFTLQRYKGLGEMDAG 584

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           QL ET +D  +R L +VEI     + + T+     LMG++   R +FI E A   + +  
Sbjct: 585 QLWETTLDPERRVLKQVEIEDARMASEITE----MLMGSEVAPRREFIYEHADEAE-IDA 639


>gi|171741730|ref|ZP_02917537.1| hypothetical protein BIFDEN_00821 [Bifidobacterium dentium ATCC
           27678]
 gi|283454964|ref|YP_003359528.1| DNA gyrase [Bifidobacterium dentium Bd1]
 gi|171277344|gb|EDT45005.1| hypothetical protein BIFDEN_00821 [Bifidobacterium dentium ATCC
           27678]
 gi|283101598|gb|ADB08704.1| DNA gyrase [Bifidobacterium dentium Bd1]
          Length = 704

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 251/705 (35%), Positives = 376/705 (53%), Gaps = 28/705 (3%)

Query: 4   DSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPG 63
              DL +    +S  ++++ +   +  +     +  + ++YDAS +R+LEGLE VR+RPG
Sbjct: 6   SVADLDADSLNESAENTQEDQIQNDQLEDAQLDDSLSPEHYDASDLRVLEGLEAVRIRPG 65

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIG T  + LHHL  E++DN++DE +AGYA+ IEV++  +G + VVD+GRGIPV+  P 
Sbjct: 66  MYIGSTGPRGLHHLVYEIVDNSVDEALAGYASHIEVTILPDGGVRVVDDGRGIPVDEVP- 124

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
               S +E ++T LHAGGKF    Y +SGGLHGVGISVVNALS  + + V RQ   ++Q 
Sbjct: 125 GEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHWTQT 184

Query: 184 FSRGIPLSPLEKKEKV--RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241
           +    P + L K E +      GT +TF  D KIF     +D   L    Q  A+L+  +
Sbjct: 185 YVDQKPTARLAKGEPMAEGESTGTSVTFWADGKIFET-TTYDFETLRNRFQQMAFLNKGL 243

Query: 242 KTCWSCDKEI-----------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
           K   +  +E             E     +   + +  G+K Y+   +++R     E    
Sbjct: 244 KLSLTDLREPDQAGDEVAGELDETETKHQTVTYQYNEGIKDYVDYLVKSRKATPVEEDVI 303

Query: 291 KTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
             E +      + E A+ W       + ++ NTI T EGGTHE G R ALT  I +YA  
Sbjct: 304 DFEAEDLKIGISAEIAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLINRYARE 363

Query: 349 TQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
                 +  ++  DD+      ++SV +  P+F GQTKTKL + +A+  V+  + D    
Sbjct: 364 KNILKDKDENLSGDDVREGLTAVVSVKLTTPQFEGQTKTKLGNSEAKTFVQRVMTDKLGD 423

Query: 407 YLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTE 465
           +   +P EA  +++  IE S  R+  +K RE  R+ +I     +P KL DC  N     E
Sbjct: 424 WFDAHPSEAKNIIQKAIEASRARIAAKKARENTRRKSIFESAGMPDKLKDCQSNNPEECE 483

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
           LFIVEGDSAGGSA Q RN   QA+LPLRGKILN   A  +++  ++ I  L+ A+G    
Sbjct: 484 LFIVEGDSAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSETIESLITAVGGGYG 543

Query: 526 SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG 585
             +    +RY KVIIM DADVDGAHIA+L LT F++ M  +I   ++++  PPL+R+   
Sbjct: 544 EDFDLSKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKWT 603

Query: 586 TKSV-YAHDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
             +  + + +  + ++L E K  G+       I R+KGLGEM   +L ET MD   R L 
Sbjct: 604 KGAHDFVYTDAERDRVLAEGKAAGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILK 663

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           +V+I           ++ + LMG + + R  FIQ  A+ +  +  
Sbjct: 664 QVQIED----AAAADETFSMLMGDEVEPRRLFIQRNANKVSWIDA 704


>gi|291550229|emb|CBL26491.1| DNA topoisomerase IV subunit B [Ruminococcus torques L2-14]
          Length = 640

 Score =  575 bits (1483), Expect = e-162,   Method: Composition-based stats.
 Identities = 245/660 (37%), Positives = 354/660 (53%), Gaps = 35/660 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ YDA SI +LEGLE VR RPGMYIG    K L+HL  E++DNA+DE +AG+ + I+
Sbjct: 2   AGNNTYDAGSIAVLEGLEAVRKRPGMYIGSVSTKGLNHLIYEIVDNAVDEHLAGFCSEIQ 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+L+ +G  TV DNGRG+PV+ H K    S   ++ TTLHAGGKFD+S Y+ SGGLHGVG
Sbjct: 62  VTLEKDGSATVSDNGRGVPVDMHQK--GVSAARLVYTTLHAGGKFDDSAYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGTRITFRPDP 213
            SVVNALS  + V ++R   +   ++ RGIP+  LE     K  K R   GT + F PD 
Sbjct: 120 SSVVNALSTYMDVKISRDGFVHHDRYERGIPVIELEDGLLPKIGKTRK-TGTTVNFLPDD 178

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF     F A  +       AYL+  +   +   +E +      E   ++ P G+  ++
Sbjct: 179 TIFEK-TKFKAEEVKSRLHETAYLNPNLTIVFDDKREGSV-----EHIVYHEPEGIIGFI 232

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHES 332
           Q     + ++       K E  G     VE  + +  E +  +  +CN I   EGGTH +
Sbjct: 233 QDLNRKKEVLHDP-VYFKGEADGI---EVEVTLQYVNEFHENVLGFCNNIYNAEGGTHLT 288

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G +   T  + +YA       ++  +    D+      I+S+   +P F GQTKTKL + 
Sbjct: 289 GFKTTFTTVMNQYAREIGILKEKDANFTGADIRNGMTAIVSIKHPDPRFEGQTKTKLDNP 348

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
           DA + V     +    +  +N      +L    + ++ R    K +              
Sbjct: 349 DAAKAVSKVTGEEIVRFFDRNLDTLKTVLSSAEKAAKIRKTEEKAKTNLLTKQKYSFDSN 408

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLA+C        E+FIVEGDSAGGSAK ARNR+ QA+LP+RGKILNV  A  +K+  N
Sbjct: 409 GKLANCESRDPKKCEIFIVEGDSAGGSAKTARNRNYQAILPIRGKILNVEKASIDKVLAN 468

Query: 511 QQIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
            +I  ++ A GC       + +    LRY+K+IIM DADVDGAHI++LLLT FY+ M +L
Sbjct: 469 AEIKTMINAFGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPEL 528

Query: 567 IEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           I + H+++  PPL++   +  +  Y +D+    K LE ++K   G   + R+KGLGEM A
Sbjct: 529 IFEGHVYIAMPPLYKAMPKSGEEEYLYDD----KALERYRKTHTGPFTLQRYKGLGEMDA 584

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL ET +D  +R L RVEI     +   T+     LMGT+   R  FI E A+  + + 
Sbjct: 585 EQLWETTLDPERRMLKRVEIEDARMASSVTE----MLMGTEVPPRRNFIYENATEAE-LD 639


>gi|160901666|ref|YP_001567247.1| DNA topoisomerase (ATP-hydrolyzing) [Petrotoga mobilis SJ95]
 gi|160359310|gb|ABX30924.1| DNA topoisomerase (ATP-hydrolyzing) [Petrotoga mobilis SJ95]
          Length = 641

 Score =  575 bits (1483), Expect = e-162,   Method: Composition-based stats.
 Identities = 252/655 (38%), Positives = 377/655 (57%), Gaps = 25/655 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
               Y  + I++L+GLEPVR+RPGMYIG T +  L+H+  E+IDNA+DE + G+ + I V
Sbjct: 2   VEKTYSGNDIKVLKGLEPVRLRPGMYIGSTGKTGLNHMVYEIIDNAIDEHVNGFCDTIRV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L+ +  + V DNGRGIPV+ HP   NK+TLE+++T+LHAGGKFD   Y++SGGLHGVG 
Sbjct: 62  TLNEDDSIEVEDNGRGIPVDIHP-TENKNTLELVMTSLHAGGKFDKKAYKVSGGLHGVGA 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+ + V V R   I+ QK++RG+P + +    +  +K GT + F PD +IF D 
Sbjct: 121 SVVNALSEYMEVKVYRDGKIYYQKYARGVPQTDVIIVGET-DKSGTVVKFLPDKEIFDDG 179

Query: 220 AGFDAARLLK-MTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
                +RL++   +  A+L+  +K  +   K          K+EF+F GGL  ++   L+
Sbjct: 180 DITVESRLIENRLKEIAFLNPNLKVIFEDRKR-------DYKQEFHFLGGLNEFINYILK 232

Query: 279 NRSLI---SSEIFTGKT-EKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESG 333
            R +          G     K      VE A  + +       S+ N I T +GG HESG
Sbjct: 233 RRKMNSISEPVYMYGSYQYSKVESEIQVEAAFVYTDSEESEVISFVNNIRTIDGGEHESG 292

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            + ALTR   +YA       ++  +   +D+    + I+ + +  P F GQTK +L S  
Sbjct: 293 FKQALTRLSNEYARKYNVLKEKDENFSGEDVREGLLAIIHIKMPNPVFEGQTKGRLGSKV 352

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLP 450
           A+  V     +    Y   N  EA  + E +    ++RL  ++ R+   RKT      LP
Sbjct: 353 AREAVNQITTEKLSLYFDANIKEAKNIFERMFLAYKKRLAAKRARDSIKRKTIFENTTLP 412

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC+    + +ELFIVEGDSAGG+AKQAR+R  QA+LPLRGKILN       K+  N
Sbjct: 413 GKLADCTSRDLNESELFIVEGDSAGGNAKQARDRMYQAILPLRGKILNAEKTDFLKLLKN 472

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           +Q+ +++ ALG     ++    LRY K+IIMTDADVDGAHI +L+LT F++ M  LIE+ 
Sbjct: 473 EQVSNIIIALGTGIGEEFNLSKLRYGKIIIMTDADVDGAHIRTLVLTLFHKYMRSLIEEG 532

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPL+R   G +  Y + +E  +++    KK+G  K  I R+KGLGEM   QL+E
Sbjct: 533 YVYIAQPPLYRFEIGKQHFYLYSDEELEELK---KKYGDKKWRIQRYKGLGEMNPDQLRE 589

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T MD + R L+++++      L+  ++ I  LMG     R +FI+  A+ + ++ 
Sbjct: 590 TTMDRDTRKLVKIKMED----LEMAEEMIEILMGYDPSIRREFIESNANKVKELD 640


>gi|309801982|ref|ZP_07696096.1| DNA gyrase, B subunit [Bifidobacterium dentium JCVIHMP022]
 gi|308221430|gb|EFO77728.1| DNA gyrase, B subunit [Bifidobacterium dentium JCVIHMP022]
          Length = 698

 Score =  575 bits (1483), Expect = e-162,   Method: Composition-based stats.
 Identities = 251/703 (35%), Positives = 376/703 (53%), Gaps = 28/703 (3%)

Query: 6   IDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMY 65
            DL +    +S  ++++ +   +  +     +  + ++YDAS +R+LEGLE VR+RPGMY
Sbjct: 2   ADLDADSLNESAENTQEDQIQNDQLEDAQLDDSLSPEHYDASDLRVLEGLEAVRIRPGMY 61

Query: 66  IGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFP 125
           IG T  + LHHL  E++DN++DE +AGYA+ IEV++  +G + VVD+GRGIPV+  P   
Sbjct: 62  IGSTGPRGLHHLVYEIVDNSVDEALAGYASHIEVTILPDGGVRVVDDGRGIPVDEVP-GE 120

Query: 126 NKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFS 185
             S +E ++T LHAGGKF    Y +SGGLHGVGISVVNALS  + + V RQ   ++Q + 
Sbjct: 121 GVSGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHWTQTYV 180

Query: 186 RGIPLSPLEKKEKV--RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
              P + L K E +      GT +TF  D KIF     +D   L    Q  A+L+  +K 
Sbjct: 181 DQKPTARLAKGEPMAEGESTGTSVTFWADGKIFET-TTYDFETLRNRFQQMAFLNKGLKL 239

Query: 244 CWSCDKEI-----------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             +  +E             E     +   + +  G+K Y+   +++R     E      
Sbjct: 240 SLTDLREPDQAGDEVAGELDETETKHQTVTYQYNEGIKDYVGYLVKSRKATPVEEDVIDF 299

Query: 293 E-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
           E +      + E A+ W       + ++ NTI T EGGTHE G R ALT  I +YA    
Sbjct: 300 EAEDLKIGISAEIAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLINRYAREKN 359

Query: 351 --NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
               +  ++  DD+      ++SV +  P+F GQTKTKL + +A+  V+  + D    + 
Sbjct: 360 ILKDKDENLSGDDVREGLTAVVSVKLTTPQFEGQTKTKLGNSEAKTFVQRVMTDKLGDWF 419

Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELF 467
             +P EA  +++  IE S  R+  +K RE  R+ +I     +P KL DC  N     ELF
Sbjct: 420 DAHPSEAKNIIQKAIEASRARIAAKKARENTRRKSIFESAGMPDKLKDCQSNNPEECELF 479

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           IVEGDSAGGSA Q RN   QA+LPLRGKILN   A  +++  ++ I  L+ A+G      
Sbjct: 480 IVEGDSAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSETIESLITAVGGGYGED 539

Query: 528 YREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTK 587
           +    +RY KVIIM DADVDGAHIA+L LT F++ M  +I   ++++  PPL+R+     
Sbjct: 540 FDLSKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKWTKG 599

Query: 588 SV-YAHDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTLLRV 643
           +  + + +  + ++L E K  G+       I R+KGLGEM   +L ET MD   R L +V
Sbjct: 600 AHDFVYTDAERDRVLAEGKAAGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQV 659

Query: 644 EINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           +I           ++ + LMG + + R  FIQ  A+ +  +  
Sbjct: 660 QIED----AAAADETFSMLMGDEVEPRRLFIQRNANKVSWIDA 698


>gi|225352385|ref|ZP_03743408.1| hypothetical protein BIFPSEUDO_04002 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156892|gb|EEG70261.1| hypothetical protein BIFPSEUDO_04002 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 705

 Score =  575 bits (1482), Expect = e-162,   Method: Composition-based stats.
 Identities = 251/706 (35%), Positives = 378/706 (53%), Gaps = 29/706 (4%)

Query: 4   DSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPG 63
              DL +    +S  ++++ +   +  +     +  A ++YDAS +R+LEGLE VR+RPG
Sbjct: 6   SVADLDADSLNESAENTQEDQIQNDQLEDAQLDDTLAPEHYDASDLRVLEGLEAVRIRPG 65

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIG T  + LHHL  E++DN++DE +AGYA+ IEV++  +G + VVD+GRGIPV+  P 
Sbjct: 66  MYIGSTGPRGLHHLVYEIVDNSVDEALAGYASHIEVTILPDGGVRVVDDGRGIPVDEVP- 124

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
               S +E ++T LHAGGKF    Y +SGGLHGVGISVVNALS  +++ V RQ   ++Q 
Sbjct: 125 GEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVNIEVRRQGFHWTQT 184

Query: 184 FSRGIPLSPLEKKEKVRNK--RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241
           +    P + L K E +      GT +TF  D  IF     +D   L    Q  A+L+  +
Sbjct: 185 YIDQKPTARLAKGEPMGEDESTGTSVTFWADGAIFET-TTYDFETLRNRFQQMAFLNKGL 243

Query: 242 KTCWSCDKEIA----------EKYGIPEKE--EFYFPGGLKTYLQTKLENRSLISSEIFT 289
           K   +  +E            +    P+ +   + +  G+K Y+   +++R     E   
Sbjct: 244 KLSLTDLREPDQAGDEVAGESDDNAEPKHQTVTYQYNDGIKDYVDYLVKSRKATPVEPDV 303

Query: 290 GKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
              E +      + E A+ W       + ++ NTI T EGGTHE G R ALT  + +YA 
Sbjct: 304 IDFEAEDLKIGISAEIAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLVNRYAR 363

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                  +  ++  DD+      ++SV +  P+F GQTKTKL + +A+  V+  + D   
Sbjct: 364 EKNILKDKDENLSGDDVREGLTAVVSVKLTTPQFEGQTKTKLGNSEAKTFVQRVMTDKLG 423

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGT 464
            +   +P EA  +++  IE S  RL  +K RE  R+ +I     +P KL DC  N     
Sbjct: 424 DWFDSHPSEAKNIIQKAIEASRARLAAKKARENTRRKSIFESAGMPDKLKDCQSNNPEEC 483

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           ELFIVEGDSAGGSA Q RN   QA+LPLRGKILN   A  +++  ++ I  L+ A+G   
Sbjct: 484 ELFIVEGDSAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSETIESLITAVGGGY 543

Query: 525 RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ 584
              +    +RY KVIIM DADVDGAHIA+L LT F++ M  +I   ++++  PPL+R+  
Sbjct: 544 GEDFDLNKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKW 603

Query: 585 GTKSV-YAHDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTL 640
              +  + + +  + ++L E K  G+       I R+KGLGEM   +L ET MD + R L
Sbjct: 604 TKGAHDFVYTDAERDRVLAEGKSAGRQLPKGEGIQRYKGLGEMSYQELWETTMDPDHRIL 663

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
            +V+I           ++ + LMG + + R  FIQ  A  +  +  
Sbjct: 664 KQVQIED----AAAADETFSMLMGDEVEPRRLFIQRNARNVSWIDA 705


>gi|212715155|ref|ZP_03323283.1| hypothetical protein BIFCAT_00041 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661836|gb|EEB22411.1| hypothetical protein BIFCAT_00041 [Bifidobacterium catenulatum DSM
           16992]
          Length = 705

 Score =  575 bits (1482), Expect = e-162,   Method: Composition-based stats.
 Identities = 252/706 (35%), Positives = 377/706 (53%), Gaps = 29/706 (4%)

Query: 4   DSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPG 63
              DL +    +S  ++++ +   +  +     +  A ++YDAS +R+LEGLE VR+RPG
Sbjct: 6   SVADLDADSLNESAENTQEDQIQNDQLEDAQLDDTLAPEHYDASDLRVLEGLEAVRIRPG 65

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIG T  + LHHL  E++DN++DE +AGYA+ IEV++  +G + VVD+GRGIPV+  P 
Sbjct: 66  MYIGSTGPRGLHHLVYEIVDNSVDEALAGYASHIEVTILPDGGVRVVDDGRGIPVDEVP- 124

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
               S +E ++T LHAGGKF    Y +SGGLHGVGISVVNALS  + + V RQ   ++Q 
Sbjct: 125 GEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHWTQT 184

Query: 184 FSRGIPLSPLEKKEKVRNK--RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241
           +    P S L K E +      GT +TF  D  IF     +D   L    Q  A+L+  +
Sbjct: 185 YINQKPTSRLLKGEPMGEDESTGTSVTFWADGAIFET-TTYDFEILRNRFQQMAFLNKGL 243

Query: 242 KTCWSCDKEIA----------EKYGIPEKE--EFYFPGGLKTYLQTKLENRSLISSEIFT 289
           K   +  +E            +    P+ +   + +  G+K Y+   +++R     E   
Sbjct: 244 KLSLTDLREPDQAGDEVAGDGDDNAEPKHQTVTYQYNDGIKDYVDYLVKSRKATPIEPDV 303

Query: 290 GKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
              E +      + E A+ W       + ++ NTI T EGGTHE G R ALT  + +YA 
Sbjct: 304 IDFEAEDLKIGISAEIAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLVNRYAR 363

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                  +  ++  DD+      ++SV +  P+F GQTKTKL + +A+  V+  + D   
Sbjct: 364 EKNILKDKDENLSGDDVREGLTAVVSVKLTTPQFEGQTKTKLGNSEAKTFVQRVMTDKLG 423

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGT 464
            +   +P EA  +++  IE S  RL  +K RE  R+ +I     +P KL DC  N     
Sbjct: 424 DWFDSHPSEAKNIIQKAIEASRARLAAKKARENTRRKSIFESAGMPDKLKDCQSNNPEEC 483

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           ELFIVEGDSAGGSA Q RN   QA+LPLRGKILN   A  +++  ++ I  L+ A+G   
Sbjct: 484 ELFIVEGDSAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSETIESLITAVGGGY 543

Query: 525 RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ 584
              +    +RY KVIIM DADVDGAHIA+L LT F++ M  +I   ++++  PPL+R+  
Sbjct: 544 GEDFDLNKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKW 603

Query: 585 GTKSV-YAHDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTL 640
              +  + + +  + ++L E K  G+       I R+KGLGEM   +L ET MD + R L
Sbjct: 604 TKGAHDFVYTDAERDRVLAEGKAAGRQLPKGEGIQRYKGLGEMSYQELWETTMDPDHRIL 663

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
            +V+I           ++ + LMG + + R  FIQ  A  +  +  
Sbjct: 664 KQVQIED----AAAADETFSMLMGDEVEPRRLFIQRNARNVSWIDA 705


>gi|309775455|ref|ZP_07670458.1| DNA topoisomerase IV, B subunit [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916844|gb|EFP62581.1| DNA topoisomerase IV, B subunit [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 643

 Score =  575 bits (1482), Expect = e-162,   Method: Composition-based stats.
 Identities = 234/650 (36%), Positives = 356/650 (54%), Gaps = 29/650 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A + YD SSI+IL+GL+ VR RPGMYIG TD + LHHL  E++DN++DE + G+ + I +
Sbjct: 2   AENAYDGSSIQILDGLDAVRKRPGMYIGSTDSRGLHHLVWEIVDNSIDEALNGHGDTIRI 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD-NSTYEISGGLHGVG 158
           +++ +  + V D GRG+PV+ H        +++I T LHAGGKF     Y+ SGGLHGVG
Sbjct: 62  TIEKDNVICVEDEGRGMPVDMH--ASGVPAVQVIYTVLHAGGKFSTEGGYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS+ + VTV R  +I+   FS G       +     +K G+++ F+ D  +F  
Sbjct: 120 ASVVNALSEWVEVTVYRNGSIYRMNFSDGGSKVSKLEVIGKTSKTGSKVRFKADKTMFST 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              +   ++ +  Q  A+L   +K     ++E  E+      E +++  GL  +++   E
Sbjct: 180 T-KYSFHQIAERAQEDAFLLEGLKLVVRDEREGKERE-----EVYHYEQGLVAFMEYLHE 233

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           ++ +    +          +   V+ A  + +E    I S+ N + T +GGTHE+G + A
Sbjct: 234 DKQVFHKPVAFSGM----ANEIKVDCAFQYTDEYQENIFSFVNIVRTKDGGTHETGAKNA 289

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
            T+   +YA        +  +    D+      ILS+ I E   +F GQTK KL + +A+
Sbjct: 290 FTKVFNEYARKNGLLKDKDKNFEGSDVREGLTIILSLGIPENLLQFEGQTKGKLGTAEAK 349

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL---RLP 450
             V++ + +   ++L +N   A  L++ +   S  R   RK RE  RK   +      L 
Sbjct: 350 AAVDSIVSEKLSYFLEENKELAITLIKKMQRASTAREAARKAREDARKGKSKGKTEKILS 409

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLA      A   EL++VEGDSAGGSAKQ R+   QA+LPLRGK+LN   A    I  N
Sbjct: 410 GKLASAQSKDARKKELYLVEGDSAGGSAKQGRDSKYQAILPLRGKVLNTEKASITNIEKN 469

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           +++  ++ ALG    + +  ED  Y KVIIMTDAD DGAHI  LLLTFFY+ M +LIEQ 
Sbjct: 470 EELNTIIHALGAGVGANFHAEDSNYHKVIIMTDADTDGAHIQILLLTFFYRYMRELIEQG 529

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
            +++  PPL+++ +G    YA  +E   ++ + F K       + R+KGLGEM A QL +
Sbjct: 530 MVYIALPPLYKLQKGKDIQYAWTDEELDELRKTFPK----GFSLQRYKGLGEMNADQLWD 585

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           T M    RTL++V I+  +      +  ++ LMG KA+ R  +I+E  SF
Sbjct: 586 TTMCPETRTLIQVTIDDAVV----AEKRVSVLMGDKANLRRNWIEENVSF 631


>gi|293400718|ref|ZP_06644863.1| DNA topoisomerase IV, B subunit [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305744|gb|EFE46988.1| DNA topoisomerase IV, B subunit [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 644

 Score =  575 bits (1482), Expect = e-162,   Method: Composition-based stats.
 Identities = 240/650 (36%), Positives = 357/650 (54%), Gaps = 29/650 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A   YD SSI+IL+GL+ VR RPGMYIG TD + LHHL  E++DN++DE + G+   I++
Sbjct: 2   AEKTYDGSSIQILDGLDAVRKRPGMYIGSTDGRGLHHLVWEIVDNSIDEALNGFGETIKI 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN-STYEISGGLHGVG 158
           +++ +G + V D GRG+PV+ H       TL++I T LHAGGKF +   Y+ SGGLHGVG
Sbjct: 62  TIEKDGVICVEDEGRGMPVDMH--VSGVPTLQVIHTVLHAGGKFSSQGGYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNAL   + V+V R   I+  +F  G       +     NK G++  F PD KIF  
Sbjct: 120 ASVVNALCSWMEVSVYRDGKIYQMRFEDGGKKIGKLEVIGKTNKTGSKTRFMPDKKIFST 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F  +++ +  Q  A+L   ++     ++E  E+      E +++  GL  +++   E
Sbjct: 180 TR-FSFSQIAERAQEDAFLLEGLRLVVRDEREGKERE-----EVYHYEEGLVAFMEYLHE 233

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           ++      +     E  G     V+ A  + +E    I S+ N + T +GGTHE+G R A
Sbjct: 234 DKQTFHKPV-AFSGEVNGI---KVDCAFQYTDEYQENIFSFVNIVRTKDGGTHETGARNA 289

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
            T+    YA       ++  +    D+      ILS+ I E   +F GQTK KL + +A+
Sbjct: 290 FTKVFNDYARRNGLLKEKEKNFEGSDVREGLTIILSLGIPENLLQFEGQTKGKLGTPEAK 349

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---P 450
             V++ + +  + +L +N   AT L++ +   S  R   RK RE  RK   +        
Sbjct: 350 NAVDSIVSEKLNFFLEENKELATTLIKKMQRASTAREAARKAREDARKGKSKGKSEKILS 409

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLA      A   EL++VEGDSAGGSAKQ R+   QA+LPLRGK+LN   A    I  N
Sbjct: 410 GKLASAQSKDARKKELYLVEGDSAGGSAKQGRDSKYQAILPLRGKVLNTEKASITNIEKN 469

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           +++  ++ ALG    + +  ED  Y KVIIMTDAD DGAHI  LLLTFFY+ M +LIE+ 
Sbjct: 470 EELNTIIHALGAGVGANFHAEDSNYHKVIIMTDADDDGAHIQILLLTFFYRYMRELIEKG 529

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
            +++  PPL+++ +G +  YA  +E     L++ +K+      + R+KGLGEM A QL +
Sbjct: 530 MVYIAMPPLYKLQKGKEMRYAWTDEE----LDQLRKNFPKGYTLQRYKGLGEMNADQLWD 585

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           T M    RTL++V I   +      +  ++ LMG KA+ R  +I+E  SF
Sbjct: 586 TTMCPETRTLIQVSIEDAVV----AEKRVSVLMGDKANLRRDWIEENVSF 631


>gi|331703509|ref|YP_004400196.1| Topoisomerase IV subunit B [Mycoplasma mycoides subsp. capri LC
           str. 95010]
 gi|256384465|gb|ACU79035.1| DNA topoisomerase IV, B subunit [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|256385298|gb|ACU79867.1| DNA topoisomerase IV, B subunit [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|296455442|gb|ADH21677.1| DNA topoisomerase IV, B subunit [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
 gi|328802064|emb|CBW54218.1| Topoisomerase IV subunit B [Mycoplasma mycoides subsp. capri LC
           str. 95010]
          Length = 643

 Score =  575 bits (1482), Expect = e-162,   Method: Composition-based stats.
 Identities = 243/646 (37%), Positives = 352/646 (54%), Gaps = 28/646 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             YD S+I++LEGL+ VR RPGMYIG TD + LHHL  E++DNA+DE +AGY   I+V L
Sbjct: 5   KKYDESAIQVLEGLDAVRKRPGMYIGSTDNRGLHHLVWEIVDNAIDEALAGYCTQIDVIL 64

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +  +TV+DNGRGIP   H     KST E+I + LHAGGKFD++ Y+ SGGLHGVG SV
Sbjct: 65  EKDNSITVIDNGRGIPTGMHK--TGKSTPEVIFSVLHAGGKFDSTAYKSSGGLHGVGSSV 122

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
            NALS     T+ R   I   +F  G  L           K GT I F PD  IF +   
Sbjct: 123 TNALSKRFKATIYRDKKIHEIEFKNGGKLEKPLTFIANTYKTGTTINFLPDDSIFSN-TK 181

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F+ + + +  +  A L+  +K   S               E+ F  GL  +++  +++++
Sbjct: 182 FNFSLISERLKESALLNSGLKITLSD-------LISNRYVEYQFQDGLVEFIKELVDDKT 234

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
            ++  I      K       +++     ++N  I  + N + T +GGTH  G +  L R 
Sbjct: 235 PVTDIITINNESKNIIAEIALQYTE---DDNEIILGFANNVKTSDGGTHLVGFKSGLIRA 291

Query: 342 IKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVEN 398
           I  YA+  +  K    + S+DL    V I++V I E   E+ GQTK+KL + DA+  VE 
Sbjct: 292 INDYAKDQKILKDKTKLDSNDLREGLVAIVTVKIPENLIEYEGQTKSKLGTSDAKTVVEQ 351

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP---GKLAD 455
            + +   ++L++N + A K++E  +   + R+  ++ R+  +    +K       GKL  
Sbjct: 352 IVYEFMSYWLIENKVLANKVIENALNAQKARIAAKQARQAIKSVKGKKNVNKLMLGKLTP 411

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
                    EL++VEGDSAGGSAK  R+R+ QA+LPLRGK++N   A    +  N++I  
Sbjct: 412 AQGKKRELNELYLVEGDSAGGSAKSGRDRNFQAILPLRGKVINSEKAKLVDLLKNEEIQS 471

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ A+G      +   D+ Y K+IIMTDAD DGAHI +LLLTFFY+ M DLI  K +++ 
Sbjct: 472 IINAIGAGVGKDFDISDINYGKIIIMTDADTDGAHIQTLLLTFFYRHMKDLITHKKVYIA 531

Query: 576 SPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
            PPL++IT   KS  Y  DEE     L EF K    K EI R+KGLGEM A QL +T MD
Sbjct: 532 LPPLYKITFNDKSFIYLWDEEE----LNEFNKTNTKKYEIQRYKGLGEMNADQLWQTTMD 587

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
              R +++V I+  L      +     LMG   ++R  +IQE   F
Sbjct: 588 PKNRKIIQVSISDGL----LAERMFKTLMGDDVEKRKLWIQENVKF 629


>gi|268316832|ref|YP_003290551.1| DNA topoisomerase (ATP-hydrolyzing) [Rhodothermus marinus DSM 4252]
 gi|262334366|gb|ACY48163.1| DNA topoisomerase (ATP-hydrolyzing) [Rhodothermus marinus DSM 4252]
          Length = 648

 Score =  575 bits (1482), Expect = e-162,   Method: Composition-based stats.
 Identities = 280/649 (43%), Positives = 391/649 (60%), Gaps = 18/649 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y    I++LEGLEPVR RPGMYIGGT +  LHHL  E++DNA+DE + G+A+LIEV+
Sbjct: 5   AATYTGKDIQVLEGLEPVRKRPGMYIGGTGKPGLHHLLWEIVDNAVDEAVNGFASLIEVT 64

Query: 101 LDGNG-FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           L  +G  +TV DNGRGIPV+ HP      TLE+ILTTLHAGGKFD   Y  SGGLHGVG 
Sbjct: 65  LHADGRSVTVTDNGRGIPVDPHP-VKKIPTLELILTTLHAGGKFDRKNYITSGGLHGVGA 123

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+EL  TV R    + Q+F RG P + L+   +     GT I FRPDP+IF   
Sbjct: 124 SVVNALSEELVATVKRDGKTYQQRFVRGKPKTKLKVVAENTRGTGTSIYFRPDPEIFETT 183

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             FD   + +  + K YL+  +K  +  +          E+ EF+  GG+  YL   +E 
Sbjct: 184 -EFDPVWIREHLEIKTYLNRNLKIVFKDE-------TSGERYEFHHEGGIVEYLARLVEE 235

Query: 280 R-SLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVA 337
           + + +         +++      +E A+ W E     I S+ N I T EGGTHE G + A
Sbjct: 236 QGARVVHPEPFVLIQEELRDGARLEVALQWTEAPRELIKSFVNGIPTTEGGTHEQGFKEA 295

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           +   ++ Y E      R + + +DD+    V ++++F+ EP+F GQTK KL + +A+  V
Sbjct: 296 VRSAVRAYMETHDLLPRNLEVTADDIREGLVAVVNLFMVEPQFQGQTKEKLNNPEARSLV 355

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE--VNRKTAIRKLRLPGKLA 454
             A+R   + +L  +P  A  ++  +I+ ++ RL  R        + +   +L LPGKLA
Sbjct: 356 IGAVRLDLEQFLNAHPTMAEAIVARIIQAAKARLASRAAARSVRRQSSVSHRLNLPGKLA 415

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC+       ELFIVEGDSAGGSAKQAR+R  QAVLPLRGK+LN   A   K+  N+++ 
Sbjct: 416 DCTSTNPEECELFIVEGDSAGGSAKQARDRRFQAVLPLRGKVLNAEQASLRKVEENKELS 475

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           ++VQALGC    +     LRY K+I++ DAD DG HI +LLLTFFY+ M  LIE  H+++
Sbjct: 476 NIVQALGCGIGDKIDLSRLRYHKIILLMDADSDGHHITTLLLTFFYRYMRPLIENGHVYV 535

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAM 633
             PPL+RI  G ++ +A D+  + +IL+E +K  K  ++EI RFKGLGEM+   L+ET +
Sbjct: 536 AQPPLYRIDAGKETYWALDDADRDRILQELRKKRKNVQVEIQRFKGLGEMMPDTLRETTL 595

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           D  KR LLRVEI +D   L  T+ +I +LMG     RF+FI E A+ +D
Sbjct: 596 DPRKRRLLRVEIPEDARLL--TEQTITELMGRDVSARFRFIMENAAQVD 642


>gi|291546804|emb|CBL19912.1| DNA topoisomerase IV subunit B [Ruminococcus sp. SR1/5]
          Length = 652

 Score =  575 bits (1482), Expect = e-162,   Method: Composition-based stats.
 Identities = 246/668 (36%), Positives = 347/668 (51%), Gaps = 34/668 (5%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
                +  +  D YDA SI +LEGLE VR RPGMYIG    K L+HL  E++DNA+DE +
Sbjct: 5   KKKGISGMAKKDTYDAGSISVLEGLEAVRKRPGMYIGSVSRKGLNHLIYEIVDNAVDEHL 64

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AGY + I V L+ +G  TV DNGRGIPV+ H K    S   ++ TTLHAGGKFDNS Y+ 
Sbjct: 65  AGYCSRIHVVLEKDGSCTVEDNGRGIPVDMHAK--GISAERLVFTTLHAGGKFDNSAYKT 122

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGT 205
           SGGLHGVG SVVNALS  L + ++R   I    + RGIP   LE     K  K R   GT
Sbjct: 123 SGGLHGVGSSVVNALSTYLDIKISRDGYIHHDHYERGIPTIELEAGLLPKLGKTRG-TGT 181

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            + F PDP+IF     F AA +       AYL+  +   +   +        PE  E++ 
Sbjct: 182 CVNFLPDPEIFEK-TRFGAADVKSRLHETAYLNPELTIHFEDRR-----GDTPEDIEYHE 235

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
           P G+  +++   +N   +       K E  G     VE A  +  E    +  +CN I  
Sbjct: 236 PEGIVGFIRDLNKNAQPLHDP-VYFKGEADGIQ---VEVAFQFTNEFRENVLGFCNNIYN 291

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            EGGTH +G +   T  +  YA        +  +    D+      ++S+    P F GQ
Sbjct: 292 AEGGTHLTGFKTTFTTVMNTYAREIGVLKDKDPNFTGADIRNGMTAVVSIKHPAPRFEGQ 351

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TKTKL + DA R       +    +  +N      +L    + ++ R    + +      
Sbjct: 352 TKTKLDNQDASRATGKVAGEQLVLFFDRNLETLKIVLSCAEKAAKIRKTEERAKTNLLTK 411

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
                   GKLA+C +      E+FIVEGDSAGGSAK AR+R+ QA+LP+RGKILNV  A
Sbjct: 412 QKYSFDSNGKLANCEKKDPSLCEIFIVEGDSAGGSAKTARDRNYQAILPIRGKILNVEKA 471

Query: 503 GSEKIRNNQQIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
             +K+  N +I  ++ A GC       + +    LRY+K++IM DADVDGAHI++LLLT 
Sbjct: 472 TIDKVLANAEIKTMINAFGCGFSEGYGNDFDITKLRYDKIVIMADADVDGAHISTLLLTL 531

Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
           FY+ M +LI + H+++  PPL+++  +  +  Y +D++  +K     K H  G   + R+
Sbjct: 532 FYRFMPELIYEGHVYIAMPPLYKVMPKKGQEEYLYDDKALEKYR---KSHKPGSFTLQRY 588

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           KGLGEM A QL ET ++   R + RVEI     +   T+     LMG+    R  FI E 
Sbjct: 589 KGLGEMDAQQLWETTLNPETRMMKRVEIEDARMASDVTE----ILMGSDVPPRKAFIYEH 644

Query: 678 ASFIDDVG 685
           A+  + + 
Sbjct: 645 ATDAE-LD 651


>gi|229916010|ref|YP_002884656.1| DNA topoisomerase IV subunit B [Exiguobacterium sp. AT1b]
 gi|229467439|gb|ACQ69211.1| DNA topoisomerase IV, B subunit [Exiguobacterium sp. AT1b]
          Length = 655

 Score =  575 bits (1482), Expect = e-162,   Method: Composition-based stats.
 Identities = 234/652 (35%), Positives = 361/652 (55%), Gaps = 26/652 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY+  +I++LEGL  VR RPGMYIG TD + LHHL  E++DNA+DE +AG+   I+V++ 
Sbjct: 7   NYNEDAIQVLEGLTAVRKRPGMYIGSTDHRGLHHLVYEIVDNAIDEALAGFGGQIDVTIH 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            N  +TV D+GRG+P   H     K T E+I T LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 67  KNDAITVRDHGRGMPTGMH--ASGKPTPEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVV 124

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS ++ VT+ R   +F Q F+ G        +     + GT + F+PD  IF     +
Sbjct: 125 NALSSKVVVTIHRDGKVFEQTFADGGVPQTTLIETGKTRQTGTSVYFKPDATIFSTTT-Y 183

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L +  +  A+L   +    + ++         ++E F++  G+  ++Q   ++++ 
Sbjct: 184 NHDTLAERLRESAFLLKGLTITLTDER-------TEKQETFHYEEGIAEFVQYLNDDKAT 236

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           +   ++   TE +      +E A  + +   E   S+ N + T +GGTHE G + A+TR 
Sbjct: 237 LHPIVYFEGTENE----IEIELAFQFTDAYSENVLSFVNNVRTRDGGTHEVGAKTAMTRI 292

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397
           + +YA       ++  ++   D+      I+SV I E   +F GQTK+KL S +A+ + +
Sbjct: 293 MNEYARKNGLLKEKDKNLDGGDVREGLTLIVSVRIPEEFLQFEGQTKSKLGSPEARASAD 352

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK--LRLPGKLAD 455
           + +      +L +NP  AT L++  I  ++ R   RK RE  R    +K    L GKL  
Sbjct: 353 SVMAKQLTIFLEENPQMATMLIKKAIRAAQAREAARKAREEARNGKKKKRSSILNGKLTP 412

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
            +   A   ELF+VEGDSAGGSAKQ R+R+ QA+LPLRGK++N   +  + I  N++I  
Sbjct: 413 ATSKNAAKNELFLVEGDSAGGSAKQGRDRTFQAILPLRGKVINSEKSKLQDIMKNEEINT 472

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ A+G      +  +D  ++K+IIMTDAD DGAHI  LLLTFF++ M  L+E   +F+ 
Sbjct: 473 IIHAIGAGVGHDFDLDDCNFDKIIIMTDADTDGAHIQVLLLTFFFRYMRPLVEAGRVFVA 532

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+RI++G       D    +  LE+  K  K    + R+KGLGEM A QL ET M+ 
Sbjct: 533 LPPLYRISKGKGKSEQFDYAWDEDALEKLVKVYKKGYILQRYKGLGEMNADQLWETTMNP 592

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF-IDDVGT 686
           + RTL+RV ++            ++ LMG     R ++I+E  +F + +  +
Sbjct: 593 DTRTLIRVTVDD----AAVADKRVSVLMGDNVTHRREWIEENVAFGLQEDDS 640


>gi|154508246|ref|ZP_02043888.1| hypothetical protein ACTODO_00740 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797880|gb|EDN80300.1| hypothetical protein ACTODO_00740 [Actinomyces odontolyticus ATCC
           17982]
          Length = 674

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 240/678 (35%), Positives = 356/678 (52%), Gaps = 30/678 (4%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +    N     +Y AS I +LEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +A
Sbjct: 2   ADNEKNAEGEQSYGASDITVLEGLEAVRKRPGMYIGSTGERGLHHLVYEVVDNSVDEALA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           GYA+ IEV++  +G + VVDNGRGIPV+ HP   +K T+E+++T LHAGGKF    Y +S
Sbjct: 62  GYADHIEVTIQEDGGIKVVDNGRGIPVDEHP-TEHKPTVEVVMTILHAGGKFGGGGYAVS 120

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVGISVVNALS  ++  + RQ  ++   F+ G       ++ +  ++ GT   F P
Sbjct: 121 GGLHGVGISVVNALSTRVNTEIRRQGYVWRMSFANGGTPITPLERGEETDETGTTQVFYP 180

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI---------------AEKYG 256
           DP+IF     FD   L +  Q  A+L+  ++   + ++E                 +K  
Sbjct: 181 DPEIFET-VEFDFETLRQRFQQMAFLNKGLRITLTDEREFATAEGDEIAGGEEALDKKTK 239

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PE 314
                 + +  GL+ Y++     +   +        E +      +VE A+ W       
Sbjct: 240 GHRTVSYCYEHGLRDYVEYLDSAKKSETINNEIIDFEAENDEGTMSVEIAMQWTTAYSSS 299

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSV 372
           + ++ NTI T EGG HE G R ALT  + +Y         +  ++  DD+      ++S+
Sbjct: 300 VHTFANTINTTEGGMHEEGFRTALTSLVNRYGREKGIIRDKDDNLTGDDVREGLTAVISI 359

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
            + EP+F GQTKTKL + +A+  V   +      +   +P +A  ++         R+  
Sbjct: 360 KLTEPQFEGQTKTKLGNTEARTFVAQQVYSKLTDWFDAHPADAKAIINKGQAAQAARVAA 419

Query: 433 RKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           RK RE  R+   +    +PGKL DCS       E+FIVEGDSAGGSA   R+   QA+LP
Sbjct: 420 RKAREATRRKGVLESASMPGKLRDCSSRTPSECEIFIVEGDSAGGSAVGGRDPERQAILP 479

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHI 551
           +RGKILNV  A  ++  ++  I  L+ A G      +    LRY K++IM DADVDG HI
Sbjct: 480 IRGKILNVEKARLDRALSSDTIRSLITAFGTGIGEDFDISKLRYGKIVIMADADVDGQHI 539

Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ-GTKSVYAHDEEHKQKILEEFKKHGKG 610
           A+LLLT  ++ M  LIE  H F+  PPL+RI     +  +A+ ++ + ++L       + 
Sbjct: 540 ATLLLTLLFRYMRPLIEGGHTFIAMPPLYRIKWTNAEHEFAYSDKERDELLAAGSAANRR 599

Query: 611 KIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667
             +   I R+KGLGEM   +L ET MD   R L +V +++      D  ++   LMG   
Sbjct: 600 LPKEGGIQRYKGLGEMNDHELWETTMDPASRILKQVTLDE----AADADETFTILMGDDV 655

Query: 668 DERFKFIQERASFIDDVG 685
           D R  FIQ  A+ +  + 
Sbjct: 656 DRRRTFIQRNATDVRFLD 673


>gi|315038433|ref|YP_004032001.1| DNA topoisomerase IV subunit B [Lactobacillus amylovorus GRL 1112]
 gi|312276566|gb|ADQ59206.1| DNA topoisomerase IV subunit B [Lactobacillus amylovorus GRL 1112]
          Length = 648

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 247/654 (37%), Positives = 359/654 (54%), Gaps = 33/654 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ YD SSI+IL GLE VR RPGMYIG TD   L+ L  E++DN++DE +AG+   I+
Sbjct: 2   AKANTYDDSSIQILHGLEAVRKRPGMYIGSTDIHGLNQLVYEIVDNSVDEAMAGFGKEID 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +  +TV D GRG+P   H     K T+E+ILT LHAGGKF    Y+ SGGLHGVG
Sbjct: 62  VTIHKDNSVTVRDFGRGMPTGMHK--SGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
            SVVNALS  + V V R    + ++F  G  P+  L+   K ++K GT ITF+PD  IF 
Sbjct: 120 SSVVNALSSYMKVRVVRDGKAYEEEFKNGGHPVGTLKCVGKTKDKTGTTITFKPDQTIFS 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               +    + +  +  A+L   VK   + ++E          + F +  G+K+++    
Sbjct: 180 TT-KYKYETIQERIRESAFLLKGVKFVLTDEREPE------HHDVFQYDDGIKSFVSYLN 232

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRV 336
           E +    S++F  + ++ G     +E+A  + +   E   S+ N + T +GGTHESG R 
Sbjct: 233 EGK-GTISDVFYFEGKQDG---MEIEFAGQYSDGYSENLVSFVNNVRTGDGGTHESGARS 288

Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392
             TR    YA+      K+  +I   D       +LSV I E   EF GQTK KL +  A
Sbjct: 289 GFTRAFNDYAKKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQA 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLP 450
           +  V++ + +   +YL++N   A +L++      + R   +K R+ +R      +K  L 
Sbjct: 349 RSAVDSLVYEKMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLS 408

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + I  N
Sbjct: 409 GKLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKN 468

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    +++  +D  Y+KVIIMTDAD DGAHI  LLLTFFY+ M  +IE+ 
Sbjct: 469 EEINTMIYTIGAGVGTEFNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEKG 528

Query: 571 HLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +++  PPL+R+ +G     K  YA  +E     L E +K       + RFKGLGEM A 
Sbjct: 529 KVYIALPPLYRLQKGRGKKSKIQYAWTDEE----LAEDEKKMGRGYSLQRFKGLGEMNAE 584

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL +T MD   R L+RV+I+         +  +  LMG K   R K+I+E   F
Sbjct: 585 QLWQTTMDPESRMLIRVKIDD----AALAERRVTTLMGDKVAARRKWIEENVKF 634


>gi|293191018|ref|ZP_06609062.1| DNA gyrase, B subunit [Actinomyces odontolyticus F0309]
 gi|292820705|gb|EFF79671.1| DNA gyrase, B subunit [Actinomyces odontolyticus F0309]
          Length = 674

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 242/678 (35%), Positives = 357/678 (52%), Gaps = 30/678 (4%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +    N     +Y AS I +LEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +A
Sbjct: 2   ADNEKNAEGEQSYGASDITVLEGLEAVRKRPGMYIGSTGERGLHHLVYEVVDNSVDEALA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           GYA+ IEV++  +G + VVDNGRGIPV+ HP   +K T+E+++T LHAGGKF    Y +S
Sbjct: 62  GYADHIEVTIQEDGGIKVVDNGRGIPVDEHP-TEHKPTVEVVMTILHAGGKFGGGGYAVS 120

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVGISVVNALS  ++  + RQ  ++   F+ G       K+ +  ++ GT   F P
Sbjct: 121 GGLHGVGISVVNALSTRVNTEIRRQGYVWRMSFANGGTPITPLKRGEETDETGTTQVFYP 180

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI---------------AEKYG 256
           DP+IF     FD   L +  Q  A+L+  ++   + ++E                 +K  
Sbjct: 181 DPEIFET-VEFDFETLRQRFQQMAFLNKGLRITLTDEREFATDEGDEIAGGEEALDKKTK 239

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PE 314
                 + +  GL+ Y++     +   +        E +      +VE A+ W       
Sbjct: 240 GHRTVSYCYEHGLRDYVEYLDSAKKSETINNEIIDFEAENDEGTMSVEIAMQWTTAYSSS 299

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSV 372
           + ++ NTI T EGG HE G R ALT  + +Y         +  ++  DD+      ++S+
Sbjct: 300 VHTFANTINTTEGGMHEEGFRTALTSLVNRYGREKGIIRDKDDNLTGDDVREGLTAVISI 359

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
            + EP+F GQTKTKL + +A+  V   +      +L  +P +A  ++         R+  
Sbjct: 360 KLTEPQFEGQTKTKLGNTEARTFVAQQVYSKLTDWLDAHPADAKAIINKGQAAQAARVAA 419

Query: 433 RKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           RK RE  R+   +    +PGKL DCS       E+FIVEGDSAGGSA   R+   QA+LP
Sbjct: 420 RKAREATRRKGVLESASMPGKLRDCSSRTPSECEIFIVEGDSAGGSAVGGRDPERQAILP 479

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHI 551
           +RGKILNV  A  ++  ++  I  L+ A G      +    LRY K++IM DADVDG HI
Sbjct: 480 IRGKILNVEKARLDRALSSDTIRSLITAFGTGIGEDFDISKLRYGKIVIMADADVDGQHI 539

Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ-GTKSVYAHDEEHKQKILEEFKKHGKG 610
           A+LLLT  ++ M  LIE  H F+  PPL+RI     +  +A+ ++ + ++L       + 
Sbjct: 540 ATLLLTLLFRYMRPLIEGGHTFIAMPPLYRIKWTNAEHEFAYSDKERDELLAAGSAANRR 599

Query: 611 KIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667
             +   I R+KGLGEM   +L ET MD   R L +V +++      D  ++   LMG   
Sbjct: 600 LPKEGGIQRYKGLGEMNDHELWETTMDPASRILKQVTLDE----AADADETFTILMGDDV 655

Query: 668 DERFKFIQERASFIDDVG 685
           D R  FIQ  A+ +  + 
Sbjct: 656 DRRRTFIQRNATDVRFLD 673


>gi|325677512|ref|ZP_08157176.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Rhodococcus equi
           ATCC 33707]
 gi|111185878|dbj|BAF02676.1| DNA gyrase subunit B [Rhodococcus equi]
 gi|325551759|gb|EGD21457.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Rhodococcus equi
           ATCC 33707]
          Length = 678

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 245/689 (35%), Positives = 367/689 (53%), Gaps = 50/689 (7%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A      S+ Y ASSI +LEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +AGY
Sbjct: 2   AAQKSDKSNTYGASSITVLEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNSVDEAMAGY 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ +EV++  +G + VVD+GRGIPV  H       T+E+++T LHAGGKFD+  Y +SGG
Sbjct: 62  ASKVEVTMLEDGGIQVVDDGRGIPVAMH--ASGAPTVEVVMTQLHAGGKFDSDAYAVSGG 119

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVGISVVNALS ++ V +      +SQ +    P   ++ +          + F  DP
Sbjct: 120 LHGVGISVVNALSTKVEVDINVDGYRWSQTYEHAKPGPLVQGEPTTETGT--TVRFWADP 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP--------------- 258
           +IF     ++   + +  Q  A+L+  +    + ++   ++                   
Sbjct: 178 EIFET-TTYNFETVARRLQEMAFLNKGLTITLTDERVAEDEVTDDVVPVTAEAPKTATET 236

Query: 259 ------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
                       +   +++PGGL+ Y++     +  I + +     +  G     +E A+
Sbjct: 237 EEEAAAPKAPKVKSRVYHYPGGLEDYVRFINRTKQAIHNSVVGFTAKGTGH---ELEIAM 293

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLM 363
            W       + ++ NTI T EGGTHE G R ALT  +KKY   +     +   +  DD+ 
Sbjct: 294 QWNSGYSESVHTFANTINTHEGGTHEEGFRAALTSVVKKYAKDKKLVKDKDPELTGDDIR 353

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  ++   +
Sbjct: 354 EGLAAIISVKVAEPQFEGQTKTKLGNTEVKSFVQKACNENIAHWFEANPADAKTIVTKAV 413

Query: 424 ERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
             ++ R   RK RE V RK+A     LPGKLADC  N     E++IVEGDSAGGSAK  R
Sbjct: 414 SSAQARTAARKARELVRRKSATDIGGLPGKLADCRSNDPSKCEIYIVEGDSAGGSAKSGR 473

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           +   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K+++M 
Sbjct: 474 DSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDISKLRYHKIVLMA 533

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT--QGTKSVYAHDEEHKQKI 600
           DADVDG HIA+LLLT  ++ M  L+EQ H++L  PPL+++   +G    +A+ +  +  +
Sbjct: 534 DADVDGQHIATLLLTLLFRFMRPLVEQGHVYLAQPPLYKLKWQKGAAPDFAYSDRERDGL 593

Query: 601 LEEFKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
           LE     GK KI     I R+KGLGEM A +L ET MD + R L +V ++          
Sbjct: 594 LEAGLAAGK-KINKDDGIQRYKGLGEMNAKELWETTMDPSVRVLRQVTLDD----AAAAD 648

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           +  + LMG   + R  FI   A  +  + 
Sbjct: 649 ELFSVLMGEDVEARRSFITRNAKDVRFLD 677


>gi|322688196|ref|YP_004207930.1| DNA gyrase subunit B [Bifidobacterium longum subsp. infantis 157F]
 gi|320459532|dbj|BAJ70152.1| DNA gyrase subunit B [Bifidobacterium longum subsp. infantis 157F]
          Length = 696

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 247/698 (35%), Positives = 367/698 (52%), Gaps = 29/698 (4%)

Query: 12  LPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE 71
              + Q  +   + +             A ++Y+AS +R+LEGLE VR+RPGMYIG T  
Sbjct: 5   TSKEEQLKAAAERINNAELTEGELDESMAPEHYEASDLRVLEGLEAVRIRPGMYIGSTGP 64

Query: 72  KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLE 131
           + LHHL  E++DN++DE +AGYA+ IE+++  +  + VVD+GRGIPV+  P     S +E
Sbjct: 65  RGLHHLVYEIVDNSVDEALAGYASHIEITILPDNGIRVVDDGRGIPVDEVP-GEGVSGVE 123

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
            ++T LHAGGKF    Y +SGGLHGVGISVVNALS  + + V RQ   ++Q +    P +
Sbjct: 124 TVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHWTQTYIDQHPTA 183

Query: 192 PLEKKEKVR--NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
           PL++ E +      GT +TF  DPKIF     +D   L    Q  A+L+  +K   + ++
Sbjct: 184 PLKQGEPMTEGESTGTSVTFWADPKIFETTI-YDFETLRSRFQQMAFLNKGLKISLTDER 242

Query: 250 EI------------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKG 296
           E              E     +   + +  G+K Y+   ++ R     E      E +  
Sbjct: 243 ENDQAGDEVAGDAADEPGAKHQTVTYQYLNGIKDYVDYLVKVRKATPVEEDVISFEAEDL 302

Query: 297 THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKR 353
               + E A+ W       + ++ NTI T EGGTHE G R ALT  + +YA        +
Sbjct: 303 KLGISAELAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLVNRYARDKGILKDK 362

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
             ++  DD+      ++SV +  P+F GQTKTKL + +A+  V+  + D    +   +P 
Sbjct: 363 DENLSGDDVREGLTAVISVKLTNPQFEGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPA 422

Query: 414 EATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGD 472
           EA  +++  IE S  RL  +K RE  R+ +I     +P KL DC  +     ELFIVEGD
Sbjct: 423 EAKNIIQKAIEASRARLAAKKARENTRRKSIFESAGMPDKLKDCQSSNPEECELFIVEGD 482

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           SAGGSA Q RN   QA+LPLRGKILN   A  +++  +  I  L+ A+G      +    
Sbjct: 483 SAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSDTIESLITAVGGGYGEDFDISK 542

Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YA 591
           +RY KVIIM DADVDGAHIA+L LT F++ M  +I   ++++  PPL+R+        + 
Sbjct: 543 VRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMINAGYVYVAMPPLYRLKWTKGPHDFV 602

Query: 592 HDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648
           + +  + ++L E K +G+       I R+KGLGEM   +L ET MD   R L +V I   
Sbjct: 603 YTDAERDRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVHIED- 661

Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
                   ++ + LMG + + R  FIQ  A  +  +  
Sbjct: 662 ---AAAADETFSMLMGDEVEPRRLFIQRNAKNVRWIDA 696


>gi|312133628|ref|YP_004000967.1| gyrb [Bifidobacterium longum subsp. longum BBMN68]
 gi|311772886|gb|ADQ02374.1| GyrB [Bifidobacterium longum subsp. longum BBMN68]
          Length = 696

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 247/698 (35%), Positives = 367/698 (52%), Gaps = 29/698 (4%)

Query: 12  LPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE 71
              + Q  +   + +             A ++Y+AS +R+LEGLE VR+RPGMYIG T  
Sbjct: 5   TSKEEQLKAAAERINNAELTEGELDESMAPEHYEASDLRVLEGLEAVRIRPGMYIGSTGP 64

Query: 72  KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLE 131
           + LHHL  E++DN++DE +AGYA+ IE+++  +  + VVD+GRGIPV+  P     S +E
Sbjct: 65  RGLHHLVYEIVDNSVDEALAGYASHIEITILPDNGIRVVDDGRGIPVDEVP-GEGVSGVE 123

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
            ++T LHAGGKF    Y +SGGLHGVGISVVNALS  + + V RQ   ++Q +    P +
Sbjct: 124 TVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHWTQTYIDQHPTA 183

Query: 192 PLEKKEKVR--NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
           PL++ E +      GT +TF  DPKIF     +D   L    Q  A+L+  +K   + ++
Sbjct: 184 PLKQGEPMTEGESTGTSVTFWADPKIFETTI-YDFETLRSRFQQMAFLNKGLKISLTDER 242

Query: 250 EI------------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKG 296
           E              E     +   + +  G+K Y+   ++ R     E      E +  
Sbjct: 243 ENDQAGDEVAGDAADEPGAKHQTVTYQYLNGIKDYVDYLVKVRKATPVEEDVISFEAEDL 302

Query: 297 THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKR 353
               + E A+ W       + ++ NTI T EGGTHE G R ALT  + +YA        +
Sbjct: 303 KLGISAELAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLVNRYARDKGILKDK 362

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
             ++  DD+      ++SV +  P+F GQTKTKL + +A+  V+  + D    +   +P 
Sbjct: 363 DENLSGDDVREGLTAVISVKLTNPQFEGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPA 422

Query: 414 EATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGD 472
           EA  +++  IE S  RL  +K RE  R+ +I     +P KL DC  +     ELFIVEGD
Sbjct: 423 EAKNIIQKAIEASRARLAAKKARENTRRKSIFESAGMPDKLKDCQSSNPEECELFIVEGD 482

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           SAGGSA Q RN   QA+LPLRGKILN   A  +++  +  I  L+ A+G      +    
Sbjct: 483 SAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSDTIESLITAVGGGYGEDFDISK 542

Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YA 591
           +RY KVIIM DADVDGAHIA+L LT F++ M  +I   ++++  PPL+R+        + 
Sbjct: 543 VRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKWTKGPHDFV 602

Query: 592 HDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648
           + +  + ++L E K +G+       I R+KGLGEM   +L ET MD   R L +V I   
Sbjct: 603 YTDAERDRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVHIED- 661

Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
                   ++ + LMG + + R  FIQ  A  +  +  
Sbjct: 662 ---AAAADETFSMLMGDEVEPRRLFIQRNAKNVRWIDA 696


>gi|324999887|ref|ZP_08120999.1| DNA gyrase, B subunit [Pseudonocardia sp. P1]
          Length = 700

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 247/707 (34%), Positives = 369/707 (52%), Gaps = 53/707 (7%)

Query: 23  LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82
               GE        +++A + Y ASSI +L+GLE VR RPGMYIG T E+ LHHL  EV+
Sbjct: 2   AGSRGEENQLLVAQDKAAKNAYGASSITVLKGLEAVRKRPGMYIGSTGERGLHHLIWEVV 61

Query: 83  DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142
           DN++DE +AG+A  + V+L  +G + V D+GRGIPVE HP    K TLE++LT+LHAGGK
Sbjct: 62  DNSVDEAMAGHATKVVVTLQPDGGVRVEDDGRGIPVEMHP-VEKKPTLEVVLTSLHAGGK 120

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD+ +Y +SGGLHGVG+SVVNALS  L V V     I+ Q++    P   +E     ++ 
Sbjct: 121 FDDKSYAVSGGLHGVGVSVVNALSTALEVEVRVDGKIWKQRYDHAKPGELVEAGTTKKSD 180

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE--------- 253
            GT IT+  DP IF     +    + +  Q + +L+  +      ++             
Sbjct: 181 TGTTITYWADPTIFET-TSYTLETIRRRLQEQTFLNKGLTMVLRDERRPETPATGVPSSD 239

Query: 254 -------------------------KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
                                        P++  F++P GL+ ++    +++  I  +I 
Sbjct: 240 AVDEDGNPVEAAPVVDVDEEPDAEGYVAKPKEYVFHYPNGLEDFVAHLNKSKDPIHRKIV 299

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
               E  G     VE A+ W       + ++ NTI T EGGTHE G R ALT  + +YA 
Sbjct: 300 AYTGEGPGHQ---VEVAMQWNSGYSESVYTFANTINTHEGGTHEEGFRHALTATVNRYAR 356

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
             +   ++  ++  DD+      I+SV I EP+F GQTKTKL + + +  V+    +   
Sbjct: 357 DKKLIKEKDPALSGDDIREGLAAIVSVKISEPQFEGQTKTKLGNTEVKSFVQRVSNEWLA 416

Query: 406 HYLVQNPIEATKLLEWVIER-SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +  +NP EA  ++   +         RR +  V RK+A     LPGKL+DC        
Sbjct: 417 DWFERNPNEAKTIVNKAVSSAQARLAARRARELVRRKSAGDIGGLPGKLSDCRSRDPESC 476

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           EL+IVEGDSAGGSAK  R+  +QA+LP+RGKI+NV  A  +++  N ++  ++ A+G   
Sbjct: 477 ELYIVEGDSAGGSAKAGRDSMHQAILPIRGKIINVEKARIDRVLKNTEVQSIITAMGTGI 536

Query: 525 RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ 584
              +    LRY K+++M DADVDG HI +LLLT  ++ M  LIE  H+FL  PPL+++  
Sbjct: 537 HDDFDLSKLRYHKLVLMADADVDGQHIRTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKW 596

Query: 585 GT---KSVYAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKR 638
           G    +  YA+ +  +  ++E  +  GK   +   + R+KGLGEM A +L ET MD   R
Sbjct: 597 GGRGAEPEYAYSDRERDGLIEAGRAAGKKLPKDQGVQRYKGLGEMDAKELWETTMDPTNR 656

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            LL+V ++          +  + LMG   + R  FI   A  +  + 
Sbjct: 657 LLLQVSLDD----AATADELFSVLMGEDVESRRSFITRNAKDVRFLD 699


>gi|322690198|ref|YP_004219768.1| DNA gyrase subunit B [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320455054|dbj|BAJ65676.1| DNA gyrase subunit B [Bifidobacterium longum subsp. longum JCM
           1217]
          Length = 696

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 248/698 (35%), Positives = 368/698 (52%), Gaps = 29/698 (4%)

Query: 12  LPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE 71
              + Q  +   + +             A ++Y+AS +R+LEGLE VR+RPGMYIG T  
Sbjct: 5   TSKEEQLKAAAERINNAELTEGELDESMAPEHYEASDLRVLEGLEAVRIRPGMYIGSTGP 64

Query: 72  KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLE 131
           + LHHL  E++DN++DE +AGYA+ IE+++  +  + VVD+GRGIPV+  P     S +E
Sbjct: 65  RGLHHLVYEIVDNSVDEALAGYASHIEITILPDNGIRVVDDGRGIPVDEVP-GEGVSGVE 123

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
            ++T LHAGGKF    Y +SGGLHGVGISVVNALS  + + V RQ   ++Q +    P +
Sbjct: 124 TVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHWTQTYIDQHPTA 183

Query: 192 PLEKKEKVR--NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
           PL++ E +      GT +TF  DPKIF     +D   L    Q  A+L+  +K   + ++
Sbjct: 184 PLKQGEPMTEGESTGTSVTFWADPKIFETTI-YDFETLRSRFQQMAFLNKGLKISLTDER 242

Query: 250 EI------------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKG 296
           E              E     +   + +  G+K Y+   ++ R  +  E      E +  
Sbjct: 243 ENDQAGDEVAGDAADEPGAKHQTVTYQYLNGIKDYVDYLVKVRKAMPVEEDVISFEAEDL 302

Query: 297 THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKR 353
               + E A+ W       + ++ NTI T EGGTHE G R ALT  + +YA        +
Sbjct: 303 KLGISAELAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLVNRYARDKGILKDK 362

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
             ++  DD+      ++SV +  P+F GQTKTKL + +A+  V+  + D    +   +P 
Sbjct: 363 DENLSGDDVREGLTAVISVKLTNPQFEGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPA 422

Query: 414 EATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGD 472
           EA  +++  IE S  RL  +K RE  R+ +I     +P KL DC  N     ELFIVEGD
Sbjct: 423 EAKNIIQKAIEASRARLAAKKARENTRRKSIFESAGMPDKLKDCQSNNPEECELFIVEGD 482

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           SAGGSA Q RN   QA+LPLRGKILN   A  +++  +  I  L+ A+G      +    
Sbjct: 483 SAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSDTIESLITAVGGGYGEDFDISK 542

Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YA 591
           +RY KVIIM DADVDGAHIA+L LT F++ M  +I   ++++  PPL+R+        + 
Sbjct: 543 VRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKWTKGPHDFV 602

Query: 592 HDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648
           + +  + ++L E K +G+       I R+KGLGEM   +L ET MD   R L +V I   
Sbjct: 603 YTDAERDRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVHIED- 661

Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
                   ++ + LMG + + R  FIQ  A  +  +  
Sbjct: 662 ---AAAADETFSMLMGDEVEPRRLFIQRNAKNVRWIDA 696


>gi|23465218|ref|NP_695821.1| DNA gyrase subunit B [Bifidobacterium longum NCC2705]
 gi|189440294|ref|YP_001955375.1| DNA gyrase subunit B [Bifidobacterium longum DJO10A]
 gi|239622838|ref|ZP_04665869.1| DNA gyrase subunit B [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|23325846|gb|AAN24457.1| DNA gyrase subunit B, novobiocin-sensitive [Bifidobacterium longum
           NCC2705]
 gi|189428729|gb|ACD98877.1| Type IIA topoisomerase B subunit [Bifidobacterium longum DJO10A]
 gi|239514835|gb|EEQ54702.1| DNA gyrase subunit B [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 696

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 248/698 (35%), Positives = 367/698 (52%), Gaps = 29/698 (4%)

Query: 12  LPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE 71
              + Q  +   + +             A ++Y+AS +R+LEGLE VR+RPGMYIG T  
Sbjct: 5   TSKEEQLKAAAERINNAELTEGELDESMAPEHYEASDLRVLEGLEAVRIRPGMYIGSTGP 64

Query: 72  KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLE 131
           + LHHL  E++DN++DE +AGYA+ IE+++  +  + VVD+GRGIPV+  P     S +E
Sbjct: 65  RGLHHLVYEIVDNSVDEALAGYASHIEITILPDNGIRVVDDGRGIPVDEVP-GEGVSGVE 123

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
            ++T LHAGGKF    Y +SGGLHGVGISVVNALS  + + V RQ   ++Q +    P +
Sbjct: 124 TVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHWTQTYIDQHPTA 183

Query: 192 PLEKKEKVR--NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
           PL++ E +      GT +TF  DPKIF     +D   L    Q  A+L+  +K   + ++
Sbjct: 184 PLKQGEPMTEGESTGTSVTFWADPKIFETTI-YDFETLRSRFQQMAFLNKGLKISLTDER 242

Query: 250 EI------------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKG 296
           E              E     +   + +  G+K Y+   ++ R     E      E +  
Sbjct: 243 ENDQAGDEVAGDAADEPGAKHQTVTYQYLNGIKDYVDYLVKVRKATPVEEDVISFEAEDL 302

Query: 297 THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKR 353
               + E A+ W       + ++ NTI T EGGTHE G R ALT  + +YA        +
Sbjct: 303 KLGISAELAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLVNRYARDKGILKDK 362

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
             ++  DD+      ++SV +  P+F GQTKTKL + +A+  V+  + D    +   +P 
Sbjct: 363 DENLSGDDVREGLTAVISVKLTNPQFEGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPA 422

Query: 414 EATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGD 472
           EA  +++  IE S  RL  +K RE  R+ +I     +P KL DC  N     ELFIVEGD
Sbjct: 423 EAKNIIQKAIEASRARLAAKKARENTRRKSIFESAGMPDKLKDCQSNNPEECELFIVEGD 482

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           SAGGSA Q RN   QA+LPLRGKILN   A  +++  +  I  L+ A+G      +    
Sbjct: 483 SAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSDTIESLITAVGGGYGEDFDISK 542

Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YA 591
           +RY KVIIM DADVDGAHIA+L LT F++ M  +I   ++++  PPL+R+        + 
Sbjct: 543 VRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKWTKGPHDFV 602

Query: 592 HDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648
           + +  + ++L E K +G+       I R+KGLGEM   +L ET MD   R L +V I   
Sbjct: 603 YTDAERDRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVHIED- 661

Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
                   ++ + LMG + + R  FIQ  A  +  +  
Sbjct: 662 ---AAAADETFSMLMGDEVEPRRLFIQRNAKNVRWIDA 696


>gi|329890024|ref|ZP_08268367.1| DNA topoisomerase IV, B subunit [Brevundimonas diminuta ATCC 11568]
 gi|328845325|gb|EGF94889.1| DNA topoisomerase IV, B subunit [Brevundimonas diminuta ATCC 11568]
          Length = 661

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 349/645 (54%), Positives = 453/645 (70%), Gaps = 15/645 (2%)

Query: 47  SSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGF 106
           SSI +LEGLEPVR RPGMYIGGTDE+ALHHLF+EV+DNAMDE +A +A LI V LD  G+
Sbjct: 25  SSIEVLEGLEPVRKRPGMYIGGTDERALHHLFAEVLDNAMDEAVAKHAKLITVDLDAEGY 84

Query: 107 LTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALS 166
           L+V D+GRGIPV+ HPK P KS LE+++T LH+GGKF    YE SGGLHGVG+SVVNALS
Sbjct: 85  LSVRDDGRGIPVDPHPKHPGKSALEVVMTVLHSGGKFSGKAYETSGGLHGVGVSVVNALS 144

Query: 167 DELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAAR 226
           + L VTV R    + Q FSRG   +P+++    +  +GT I F+PD +IFG  A F  AR
Sbjct: 145 ESLDVTVWRDGFEWRQSFSRGHVQAPIQQVGPSKK-KGTLIRFKPDEQIFGVGATFKPAR 203

Query: 227 LLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSE 286
           L +MT++KAYL   V+  W+C  E       P +   +FPGGL   L  ++     ++  
Sbjct: 204 LFRMTRAKAYLFRGVEIRWTCAPERITDA-TPAQATLHFPGGLADALAERVGELETVTPV 262

Query: 287 IFTGKTEKKGTHRGTVEWAIAWC-----EENPEITSYCNTILTDEGGTHESGLRVALTRG 341
            F G+ E+KG   G +EWA+ W      + +  I SYCNT+ T +GGTHE+G R AL +G
Sbjct: 263 -FAGRVERKGEA-GALEWAVTWSPIGFGDADSFIASYCNTVSTPDGGTHEAGFRAALVKG 320

Query: 342 IKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
           +K Y EL   KRA  I ++D++ +A  ++SVFIR PEF GQTK +L S + QR  E  LR
Sbjct: 321 LKAYGELINEKRAAQITAEDVIANAGALISVFIRNPEFQGQTKDRLSSPEGQRLTEQLLR 380

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIA 461
           DPFDH+L ++P +A  LL +VI+R+E+RLRRRK +EV R  A RKLRLPGKL+DCS+  A
Sbjct: 381 DPFDHWLTESPKQANALLGFVIDRAEDRLRRRKDKEVQRAAATRKLRLPGKLSDCSRQAA 440

Query: 462 HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
            GTELFIVEGDSAGGSAKQAR+R+ QA+LPLRGKILNVASA ++K+R N ++ DL+ ALG
Sbjct: 441 EGTELFIVEGDSAGGSAKQARDRTTQAILPLRGKILNVASATADKLRANVELTDLMLALG 500

Query: 522 CRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581
            +  S++  +DLRYE+V+IMTDADVDGAHIA+LL+TFFY+ M DLI Q  L++  PPL+R
Sbjct: 501 VQAGSRFSVDDLRYERVVIMTDADVDGAHIAALLITFFYRSMPDLIRQGRLYMALPPLYR 560

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I+ G  S YA D+ H+ ++L    K    K EI RFKGLGEM+ASQLKET MD  KRTL 
Sbjct: 561 ISAGPLSEYARDDAHRDELLATTFK--GKKTEIGRFKGLGEMMASQLKETTMDPKKRTLA 618

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID-DVG 685
           R+ +     S ++ +D + +LMG KA+ R+ FIQE A F   D+ 
Sbjct: 619 RIALPD---SEEEIEDLVERLMGRKAEARYNFIQENARFAQADLD 660


>gi|320456980|dbj|BAJ67601.1| DNA gyrase subunit B [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 696

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 249/698 (35%), Positives = 368/698 (52%), Gaps = 29/698 (4%)

Query: 12  LPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE 71
              + Q  +   + +             A ++Y+AS +R+LEGLE VR+RPGMYIG T  
Sbjct: 5   TSKEEQLKAAAERINNAELTEGELDESMAPEHYEASDLRVLEGLEAVRIRPGMYIGSTGP 64

Query: 72  KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLE 131
           + LHHL  E++DN++DE +AGYA+ IEVS+  +  + VVD+GRGIPV+  P     S +E
Sbjct: 65  RGLHHLVYEIVDNSVDEALAGYASHIEVSILPDNGIRVVDDGRGIPVDEVP-GEGVSGVE 123

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
            ++T LHAGGKF    Y +SGGLHGVGISVVNALS  + + V RQ   ++Q +    P +
Sbjct: 124 TVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHWTQTYIDQHPTA 183

Query: 192 PLEKKEKVR--NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
           PL++ E +      GT +TF  DPKIF     +D   L    Q  A+L+  +K   + ++
Sbjct: 184 PLKQGEPMTEGESTGTSVTFWADPKIFETTI-YDFETLRSRFQQMAFLNKGLKISLTDER 242

Query: 250 EI------------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKG 296
           E              E     +   + +  G+K Y++  ++ R     E      E +  
Sbjct: 243 ENDQAGDEVAGDAADEPGAKHQTVTYQYLNGIKDYVEYLVKVRKATPVEEDVISFEAEDL 302

Query: 297 THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKR 353
               + E A+ W       + ++ NTI T EGGTHE G R ALT  + +YA        +
Sbjct: 303 KLGISAELAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLVNRYARDKGILKDK 362

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
             ++  DD+      ++SV +  P+F GQTKTKL + +A+  V+  + D    +   +P 
Sbjct: 363 DENLSGDDVREGLTAVISVKLTNPQFEGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPN 422

Query: 414 EATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGD 472
           EA  +++  IE S  RL  +K RE  R+ +I     +P KL DC  +     ELFIVEGD
Sbjct: 423 EAKNIIQKAIEASRARLAAKKARENTRRKSIFESAGMPDKLKDCQSSNPEECELFIVEGD 482

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           SAGGSA Q RN   QA+LPLRGKILN   A  +++  +  I  L+ A+G      +    
Sbjct: 483 SAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSDTIESLITAVGGGYGEDFDISK 542

Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YA 591
           +RY KVIIM DADVDGAHIA+L LT F++ M  +I   ++++  PPL+R+        + 
Sbjct: 543 VRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKWTKGPHDFV 602

Query: 592 HDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648
           + +  + ++L E K +G+       I R+KGLGEM   +L ET MD   R L +V I   
Sbjct: 603 YTDAERDRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVHIED- 661

Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
                   ++ + LMG + + R  FIQ  A  +  +  
Sbjct: 662 ---AAAADETFSMLMGDEVEPRRLFIQRNAKNVRWIDA 696


>gi|86738729|ref|YP_479129.1| DNA gyrase subunit B [Frankia sp. CcI3]
 gi|86565591|gb|ABD09400.1| DNA gyrase subunit B [Frankia sp. CcI3]
          Length = 679

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 248/674 (36%), Positives = 360/674 (53%), Gaps = 29/674 (4%)

Query: 26  SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNA 85
            G + D+ A    +    YDASSI++LEGL+ VR RPGMYIG T E+ LHHL  EV+DNA
Sbjct: 20  PGRLVDTSAQNEGTRRVAYDASSIKVLEGLDAVRKRPGMYIGSTGERGLHHLVYEVVDNA 79

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AGY + I V+L  +G + V DNGRGIPV  HP    +  +E++LTTLHAGGKFD 
Sbjct: 80  VDEALAGYCDTITVTLLADGGVRVTDNGRGIPVGMHP-TEKRPAVEVVLTTLHAGGKFDG 138

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
            +Y +SGGLHGVG+SVVNALS  L V +     ++ Q +    P  PL K    R    +
Sbjct: 139 KSYAVSGGLHGVGVSVVNALSTRLDVEIHLDGHVWFQPYVATRPDKPLAKTGTTRRTGTS 198

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            +TF  DP IF     +    L +  Q  A+L+  +      +++            + +
Sbjct: 199 -VTFWADPTIFET-TEYKYETLSRRLQEMAFLNKGLSITLVDERDEERVAVT-----YKY 251

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
             GL  ++      +  I   + + +++  G      E A+ W       + ++ NTI T
Sbjct: 252 ANGLVDFVGHLNATKDTIHRSVISLESKGVGI---EAELAMQWNGGYTESVYTFANTINT 308

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISI---------ISDDLMISAVGILSVFIR 375
            EGGTHE G R ALT  +  YA+     + +             DD+      I+SV + 
Sbjct: 309 HEGGTHEEGFRAALTSAVNAYAKDQNLLKPVKAGAKNSDERLSGDDIREGLTAIISVKLA 368

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           +P+F GQTKTKL + +A++ V+         +   N  EA  ++   ++    R+  R+ 
Sbjct: 369 QPQFEGQTKTKLGNTEAKKFVQEMCYSALKDWFEVNRTEARAIVSKALDAQRARIAARQA 428

Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           R+   RK  +    LPGKLADC        EL+IVEGDSAGGSAK  R+   QA+LPLRG
Sbjct: 429 RDLTRRKGLLGGTGLPGKLADCQYTDPERCELYIVEGDSAGGSAKGGRDSKFQAILPLRG 488

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           KILNV  A  +++  N ++  L+QALG      +    LRY K+++M DADVDG HI +L
Sbjct: 489 KILNVEKARIDRVLKNTEVQALIQALGTGIHDDFDIAKLRYHKIVLMADADVDGQHIRTL 548

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKG--K 611
           LLT  ++ M  L+E  H+FL  PPL++I  G +   YA+ +  +  ++    + G+   K
Sbjct: 549 LLTLLFRFMRPLVEAGHVFLAQPPLYKIKWGREDWEYAYSDRERDGLVARGVESGRKLPK 608

Query: 612 IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERF 671
             I RFKGLGEM A++L +T MD ++R LL+V ++          +  + LMG   D R 
Sbjct: 609 DAIQRFKGLGEMNATELWDTTMDPDRRILLQVTLDD----AAVADELFSVLMGEDVDARR 664

Query: 672 KFIQERASFIDDVG 685
            FIQ  A  +  + 
Sbjct: 665 SFIQRNAKDVRFLD 678


>gi|323466444|gb|ADX70131.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus helveticus
           H10]
          Length = 648

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 242/654 (37%), Positives = 360/654 (55%), Gaps = 33/654 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ YD SSI+IL GLE VR RPGMYIG TD   L+ L  E++DN++DE +AG+   I+
Sbjct: 2   AKANTYDDSSIQILHGLEAVRKRPGMYIGSTDIHGLNQLVYEIVDNSVDEAMAGFGKEID 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +  +T+ D GRG+P   H     K T+E+ILT LHAGGKF    Y+ SGGLHGVG
Sbjct: 62  VTIHKDNSVTIRDFGRGMPTGMHK--SGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
            SVVNALS  + V V R    + ++F +G  P+  L+   K ++  GT ITF+PD  IF 
Sbjct: 120 SSVVNALSSYMKVRVVRDGKAYEEEFEKGGHPIGTLKCLGKTKDPTGTTITFKPDAMIFS 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               +    + +  +  A+L   VK   + +++          + F +  G+K+++    
Sbjct: 180 TT-KYKYETIQERIRESAFLLKGVKFVLTDERDPE------HHDVFQYDNGIKSFVSYLN 232

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRV 336
           E +    S++F  + ++ G     +E++  + +   E   S+ N + T +GGTHESG R 
Sbjct: 233 EGK-GTISDVFYFEGKQDG---MEIEFSGQYSDGYSENLVSFVNNVRTGDGGTHESGARS 288

Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392
             TR    YA+      K+  +I   D       +LSV I E   EF GQTK KL +  A
Sbjct: 289 GFTRAFNDYAKKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQA 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLP 450
           +  V++ + +   +YL++N   A +L++      + R   +K R+ +R      +K  L 
Sbjct: 349 RSAVDSLVYEKMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLS 408

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + I  N
Sbjct: 409 GKLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKN 468

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    +++  +D  Y+KVIIMTDAD DGAHI  LLLTFFY+ M  +IE+ 
Sbjct: 469 EEINTMIYTIGAGVGAEFNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEKG 528

Query: 571 HLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +++  PPL+R+ +G     +  YA  +E     L E +K  K    + RFKGLGEM A 
Sbjct: 529 KIYIALPPLYRLQKGRGKKAQIQYAWTDEE----LAEDEKAMKRGYSLQRFKGLGEMNAE 584

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL +T M+   R L+RV+I+         +  +  LMG K   R K+I+E   F
Sbjct: 585 QLWQTTMNPESRMLIRVKIDD----AALAERRVTTLMGDKVAARRKWIEENVKF 634


>gi|119025023|ref|YP_908868.1| DNA gyrase subunit B [Bifidobacterium adolescentis ATCC 15703]
 gi|154486351|ref|ZP_02027758.1| hypothetical protein BIFADO_00160 [Bifidobacterium adolescentis
           L2-32]
 gi|118764607|dbj|BAF38786.1| DNA gyrase (topoisomerase II) B subunit [Bifidobacterium
           adolescentis ATCC 15703]
 gi|154084214|gb|EDN83259.1| hypothetical protein BIFADO_00160 [Bifidobacterium adolescentis
           L2-32]
          Length = 712

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 250/708 (35%), Positives = 372/708 (52%), Gaps = 28/708 (3%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           + D   D  +     +Q    + +   +  +     +  + ++YDAS +R+LEGLE VR+
Sbjct: 11  VADLDADSLNESAENTQEDQIQDQIQNDQLEDAQLDDSLSPEHYDASDLRVLEGLEAVRI 70

Query: 61  RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           RPGMYIG T  + LHHL  E++DN++DE +AGYA+ IEV++  +G + VVD+GRGIPV+ 
Sbjct: 71  RPGMYIGSTGPRGLHHLVYEIVDNSVDEALAGYASHIEVTILPDGGVRVVDDGRGIPVDE 130

Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
            P     S +E ++T LHAGGKF    Y +SGGLHGVGISVVNALS  + + V RQ   +
Sbjct: 131 VP-GEGISGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHW 189

Query: 181 SQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLS 238
           +Q +    P + L K + +      GT +TF  D KIF     +D   L    Q  A+L+
Sbjct: 190 TQTYIDQKPTARLLKGKPMEEGESTGTSVTFWADGKIFET-TTYDFEILRNRFQQMAFLN 248

Query: 239 GRVKTCWSCDKEIA-----------EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEI 287
             +K   +  +E             E     +   + +  G+K Y+   +++R     E 
Sbjct: 249 KGLKISLTDLREPDQAGDEVSGEESETEDKFQTVTYQYNDGIKDYVDYLVKSRKATPVEP 308

Query: 288 FTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY 345
                E +      + E A+ W       + ++ NTI T EGGTHE G R ALT  + +Y
Sbjct: 309 DVIDFEAEDLKIGISAEIAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLVNRY 368

Query: 346 AELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDP 403
           A        +  ++  DD+      ++SV +  P+F GQTKTKL + +A+  V+  + D 
Sbjct: 369 AREKNILKDKDENLSGDDVREGLTAVVSVKLTNPQFEGQTKTKLGNSEAKTFVQRVMTDK 428

Query: 404 FDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAH 462
              +   +P EA  +++  IE S  RL  +K RE  R+ +I     +P KL DC  N   
Sbjct: 429 LGDWFDAHPNEAKNIIQKAIEASRARLAAKKARENTRRKSIFESAGMPDKLKDCQSNNPE 488

Query: 463 GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
             ELFIVEGDSAGGSA Q RN   QA+LPLRGKILN   A  +++  +  I  L+ A+G 
Sbjct: 489 ECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSDTIESLITAVGG 548

Query: 523 RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI 582
                +    +RY KVIIM DADVDGAHIA+L LT F++ M  +I   ++++  PPL+R+
Sbjct: 549 GYGEDFDLNKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRL 608

Query: 583 TQGTKSV-YAHDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKR 638
                   + + +  + ++L E K  G+       I R+KGLGEM   +L ET MD + R
Sbjct: 609 KWTKGPHDFVYTDAERDRVLAEGKAAGRQLPKGEGIQRYKGLGEMSYQELWETTMDPDHR 668

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
            L +V+I           ++ + LMG + + R  FIQ  A  +  +  
Sbjct: 669 ILKQVQIED----AAAADETFSMLMGDEVEPRRLFIQRNARNVSWIDA 712


>gi|323484278|ref|ZP_08089646.1| hypothetical protein HMPREF9474_01397 [Clostridium symbiosum
           WAL-14163]
 gi|323694735|ref|ZP_08108893.1| B subunit [Clostridium symbiosum WAL-14673]
 gi|323402430|gb|EGA94760.1| hypothetical protein HMPREF9474_01397 [Clostridium symbiosum
           WAL-14163]
 gi|323501172|gb|EGB17076.1| B subunit [Clostridium symbiosum WAL-14673]
          Length = 639

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 254/660 (38%), Positives = 347/660 (52%), Gaps = 35/660 (5%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A   YDA SI +LEGLE VR RPGMYIGG   K L+HL  E++DN++DE +AG  N I V
Sbjct: 2   AKTQYDADSITVLEGLEAVRKRPGMYIGGVGTKGLNHLIYEIVDNSVDEHLAGECNDIWV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L+ +G  TV DNGRGIPVE H K    S   I+L+TLHAGGKFDN+ Y+ SGGLHGVG 
Sbjct: 62  TLEADGSCTVRDNGRGIPVEMHKK--GVSAERIVLSTLHAGGKFDNNAYKTSGGLHGVGS 119

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPL-----SPLEKKEKVRNKRGTRITFRPDPK 214
           SVVNALS+ + VTV +   I    + RGIP        L    K R   GT+I F PD +
Sbjct: 120 SVVNALSEHMDVTVYKNGQIHHDAYERGIPTVKLVDGLLPVIGKTRE-TGTKINFMPDGE 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     F A  L       AYL+ R+   +   +      G  EK  +  P G+  Y++
Sbjct: 179 IFEK-TRFKAEWLKSRLHETAYLNPRLSIHYENKR-----AGEAEKITYSEPEGILAYVK 232

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESG 333
                ++ +    +   T +       VE A  + +   E    +CN I T EGGTH  G
Sbjct: 233 ELNSTKTPVHEPFYFKGTSEN----IEVEVAFQFVDTFEENVLGFCNNIFTQEGGTHLVG 288

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            +   T  I  YA       ++  +    D       +++V   +P F GQTKTKL S D
Sbjct: 289 FKTRFTTMINSYARELGILKEKDSNFTGADTRNGMTAVIAVKHPDPIFEGQTKTKLASAD 348

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
             + V N   +    Y  +N      ++    + ++ R    K +      +       G
Sbjct: 349 CTKAVFNVTGEELQLYFDRNVEVLKAVIACAEKSAKIRKAEEKAKTNMLTKSKFSFDSNG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLA+C    A   E+FIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +K+  N 
Sbjct: 409 KLANCESRDAEKCEIFIVEGDSAGGSAKMGRNRQYQAILPIRGKILNVEKATMDKVLANA 468

Query: 512 QIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
           +I  ++   GC       + +    LRY K+I+MTDADVDG+HI +LLLTF Y+ M +LI
Sbjct: 469 EIKTMINTFGCGFSEGYGNDFDITKLRYNKIILMTDADVDGSHIDTLLLTFLYRFMPELI 528

Query: 568 EQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
              H+++  PPLF++  +  K  Y +DE    K LE ++K+  G   + R+KGLGEM A 
Sbjct: 529 SNGHVYIAMPPLFKVIPKKGKEEYLYDE----KALERYRKNHTGDFTLQRYKGLGEMDAE 584

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           QL ET ++   R L RVEI     + + T+     LMG++   R +FI E A   + +  
Sbjct: 585 QLWETTLNPENRILKRVEIEDARMASEITE----MLMGSEVPPRRQFIYEHADEAE-IDA 639


>gi|255326477|ref|ZP_05367559.1| DNA gyrase, B subunit [Rothia mucilaginosa ATCC 25296]
 gi|255296517|gb|EET75852.1| DNA gyrase, B subunit [Rothia mucilaginosa ATCC 25296]
          Length = 678

 Score =  574 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 248/682 (36%), Positives = 360/682 (52%), Gaps = 37/682 (5%)

Query: 35  FANQSASDN---YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
            + Q+AS+    Y AS I +LEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +A
Sbjct: 2   ASEQNASEQQHEYGASDITVLEGLEAVRKRPGMYIGSTTERGLHHLVYEVVDNSVDEALA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           GYA+ I+V++  +G + V D+GRGIPV+ HP   +KST+E+++T LHAGGKF    Y +S
Sbjct: 62  GYASKIDVTIQADGAVRVEDDGRGIPVDEHP-TEHKSTVEVVMTVLHAGGKFGGGGYSVS 120

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVGISVVNALS  +   V RQ   +   FS G       +K +  +K GT  TF P
Sbjct: 121 GGLHGVGISVVNALSTRVITEVHRQGYAWHISFSNGGVPDGPLRKGEPSDKTGTIQTFYP 180

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE------------------ 253
           DP+IF     FD   L    Q  A+L+  +    + ++E                     
Sbjct: 181 DPEIFET-VEFDFETLRARFQQMAFLNKGLTITLTDEREKFVGDEVAEESEKKENILNRV 239

Query: 254 --KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
                      + +  GL  Y+         I +E       +      ++E A+ W   
Sbjct: 240 RANADGFMTVTYRYDNGLFDYVHFLNAGAKTIVNEEIVSFEAEDTERNMSLEVAMQWTGA 299

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVG 368
               + SY NTI T EGGTHE G R ALT  + +YA   +    +  ++  +D+      
Sbjct: 300 YKESVYSYANTINTHEGGTHEEGFRAALTSLVNRYARENKLLRDKDDNLTGEDVREGLTA 359

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           ++S+ I EP+F GQTKTKL + +A+   +  + D    +  +NP  A  ++   I  ++ 
Sbjct: 360 VISIKISEPQFEGQTKTKLGNSEAKSFTQREVNDHLGDWFGRNPAVAKDIVRRAITAAQA 419

Query: 429 RLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
           R+  RK RE  R+   +    +PGKL DCS      +E+++VEGDSAGGSA Q RN + Q
Sbjct: 420 RIAARKARETTRRKGLLETSSMPGKLKDCSSKDPSISEIYLVEGDSAGGSAVQGRNPNTQ 479

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVD 547
           A+LPLRGKILNV  A  ++  +N +I  ++ A G      +  E  RY K+++M DADVD
Sbjct: 480 AILPLRGKILNVERARLDRALSNAEIQAMITAFGTGIGDDFDIEKARYHKIVLMADADVD 539

Query: 548 GAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKK 606
           G HI +LLLT  ++ M  LIE  +++L  PPL+RI        Y + +  + + L     
Sbjct: 540 GQHITTLLLTLLFRFMRPLIEAGYVYLAQPPLYRIKWSNAPHDYVYSDAERDEALARGAA 599

Query: 607 HGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLM 663
                 +   I R+KGLGEM  ++L +T MD  +RTLL+V++              + LM
Sbjct: 600 KNLRLPKDNGIQRYKGLGEMDYTELWDTTMDPARRTLLQVKMED----AAAADQIFSVLM 655

Query: 664 GTKADERFKFIQERASFIDDVG 685
           G   + R +FIQ+ A  I  + 
Sbjct: 656 GEDVEARREFIQQNAKDIRFLD 677


>gi|153855242|ref|ZP_01996408.1| hypothetical protein DORLON_02422 [Dorea longicatena DSM 13814]
 gi|149752241|gb|EDM62172.1| hypothetical protein DORLON_02422 [Dorea longicatena DSM 13814]
          Length = 678

 Score =  574 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 241/660 (36%), Positives = 351/660 (53%), Gaps = 35/660 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  + YDA SI ILEGLE VR RPGMYIG    K L+HL  E++DNA+DE +AGY + I 
Sbjct: 40  AKKNTYDAGSIAILEGLEAVRKRPGMYIGSVSTKGLNHLIYEIVDNAVDEHLAGYCSEIH 99

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+L+ +G  T+ DNGRG+PV+ H      S   ++ TTLHAGGKFD+S Y+ SGGLHGVG
Sbjct: 100 VTLEKDGSATIADNGRGVPVDLH--ATGVSAARVVYTTLHAGGKFDDSAYKTSGGLHGVG 157

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGTRITFRPDP 213
            SVVNALS  + V ++R   I   ++ +G P+  LE        K R   GT++ F PD 
Sbjct: 158 SSVVNALSTYMDVQISRDGYIHHDRYEQGKPVIELEDGLLPTIGKTRK-TGTKVNFLPDD 216

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF     F A  +       AYL+  +K  +   +        PE+  ++ P G+  ++
Sbjct: 217 TIFEK-TKFKAEEVKSRLHETAYLNPDLKIVFEDKR-----GAEPEQIIYHEPDGILGFI 270

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHES 332
           +     + ++       K E +G     VE A  +  E +  +  +CN I   EGGTH +
Sbjct: 271 RELNHKKEVVHDP-VYFKGEAEGI---EVEVAFQYVNEFHENVLGFCNNIYNAEGGTHLT 326

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G +   T  I +YA       ++  +    D+      I+S+   +P F GQTKTKL + 
Sbjct: 327 GFKTTFTTAINQYARELGILKEKDANFTGADIRNGMTAIVSIKHPDPRFEGQTKTKLDNP 386

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
           DA +       D    +  +N     K++    + ++ R    + +              
Sbjct: 387 DAAKACSKVTNDEIIRFFDRNLETLKKVIGCAEKAAKIRKTEERAKTNLLTKQKYSFDSN 446

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLA+C    A   E+FIVEGDSAGGSAK AR+R  QA+LP+RGKILNV  A  +K+  N
Sbjct: 447 GKLANCESRDASKCEIFIVEGDSAGGSAKTARDRMFQAILPIRGKILNVEKASIDKVLAN 506

Query: 511 QQIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
            +I  ++ A GC       + +    LRY+K+IIM DADVDGAHI++LLLT FY+ M +L
Sbjct: 507 AEIKTMINAFGCGFSEGYGNDFDISKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPEL 566

Query: 567 IEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           I + H+++  PPL++   +  +  Y +D+    K LE+++K   G   + R+KGLGEM A
Sbjct: 567 IFEGHVYIAMPPLYKAMPKKGEEEYLYDD----KALEKYRKTHDGPFTLQRYKGLGEMDA 622

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL ET ++   R L  VEI     +   T+     LMG++   R  FI E A+  + + 
Sbjct: 623 EQLWETTLNPETRLLKLVEIEDARMASSVTE----MLMGSEVPPRRSFIYENATEAE-LD 677


>gi|239626403|ref|ZP_04669434.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516549|gb|EEQ56415.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 639

 Score =  574 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 254/660 (38%), Positives = 351/660 (53%), Gaps = 35/660 (5%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A + Y+A SI +LEGLE VR RPGMYIGG   K L+HL  E++DNA+DE +AGY + + V
Sbjct: 2   AKEQYNADSITVLEGLEAVRKRPGMYIGGVGSKGLNHLIYEIVDNAVDEHLAGYCSSVWV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L+ +G  TV DNGRGIPV  H K    S   I+L+TLHAGGKFDN  Y+ SGGLHGVG 
Sbjct: 62  TLEADGSCTVRDNGRGIPVGMHKK--GLSAARIVLSTLHAGGKFDNDAYKTSGGLHGVGS 119

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGTRITFRPDPK 214
           SVVNALS+ + V V R   I+  ++ +G P+  LE        K R   GTRI F PD  
Sbjct: 120 SVVNALSEHMDVKVYRDGYIYHDEYEKGKPIIKLENGLLPVVGKTRE-TGTRINFLPDGD 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     F A  L       AYL+  +  C+   +      G  EK  ++ P G+  Y++
Sbjct: 179 IFEK-TRFKAEWLKSRLHETAYLNPMLTICYENKR-----AGENEKITYHEPEGIIAYVK 232

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESG 333
                ++ +   I+     K    R  VE AI + +   E    +CN I T EGGTH +G
Sbjct: 233 ELNTGKAAVHDPIYF----KGTVDRIEVEAAIQFVDTFEENILGFCNNIFTQEGGTHLAG 288

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            +   T  I  YA       ++  +    D       ++++   +P F GQTKTK+ S D
Sbjct: 289 FKTKFTALINSYARELGILKEKDTNFTGADTRNGMTAVVAIKHPDPIFEGQTKTKMASAD 348

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           A + V     D    Y  +N      ++    + +  R    K +      +       G
Sbjct: 349 ATKAVFTVTGDELQLYFDRNVEVLKGVIACAEKSARIRRAEEKAKTNMLTKSKFSFDSNG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLA+C    A   E+FIVEGDSAGGSAK ARNR  QA+LP+RGKILNV  A  +K+  N 
Sbjct: 409 KLANCESRDADKCEIFIVEGDSAGGSAKTARNRRYQAILPIRGKILNVEKASMDKVLANA 468

Query: 512 QIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
           +I  ++   GC       + +    LRY K+I+MTDADVDG+HI +LLLTF Y+ M +LI
Sbjct: 469 EIKTMINTFGCGFSEGYGNDFDITKLRYNKIILMTDADVDGSHIDTLLLTFLYRFMPELI 528

Query: 568 EQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
              H+++  PPLF++  +  +  Y +DE+     LE ++K   G   + R+KGLGEM A 
Sbjct: 529 YDGHVYIAMPPLFKVIPKRGEEQYLYDEKE----LERYRKTHTGDFTLQRYKGLGEMDAE 584

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           QL ET +D  +R L RVEI     + + T+     LMG++   R  FI E A   + +  
Sbjct: 585 QLWETTLDPERRVLKRVEIEDARMASEITE----MLMGSEVAPRRTFIYEHADEAE-IDA 639


>gi|89114228|gb|ABD61709.1| DNA gyrase subunit B [Acholeplasma oculi]
          Length = 594

 Score =  574 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 240/612 (39%), Positives = 358/612 (58%), Gaps = 20/612 (3%)

Query: 51  ILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVV 110
           ILEGLE V+ RPGMYIG T E+ LHHL  E++DN++DE +AGYA+ I + +     + V 
Sbjct: 1   ILEGLEAVKKRPGMYIGSTGERGLHHLVWEIVDNSIDEALAGYASEITIEVQKGNIIQVT 60

Query: 111 DNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELH 170
           DNGRGIPV+ HPK   +  +E ILTTLHAGGKFD  +Y++SGGLHGVG SVVN LS    
Sbjct: 61  DNGRGIPVDIHPK-TKRPAVETILTTLHAGGKFDKGSYKVSGGLHGVGASVVNGLSLWYL 119

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V + +   I+ QK+ RGIP   L +         T+ TF  DP IF +   ++   L   
Sbjct: 120 VEIHKDGKIYEQKYERGIPAYDLRELGTTEETG-TKTTFLADPLIFTETTVYNLETLKNR 178

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            Q  A+L+  +K      +        P +E F++ GG+  Y+Q   ++++ I  ++   
Sbjct: 179 IQQLAFLNKGLKLTLIDSR-----LETPYQETFHYEGGIVEYVQFLNQSKTKIHQDVIYT 233

Query: 291 KTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
           + E+ G    TVE A+ + +        + N I T EGG HE G ++ALTR I KYA+  
Sbjct: 234 EKEQDGV---TVEIAMQFVDSYSPNIHSFTNNISTTEGGMHEDGFKMALTRVISKYADDL 290

Query: 350 QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
           + K+   I+ +D       I+SV   EP+F GQTKTKL + + +      L +  + +L+
Sbjct: 291 KMKKDDVILGEDAREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAITSQILGESLERFLL 350

Query: 410 QNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFI 468
           +NP +A  +++ V+  +  R+  RK +E   RK+ +  L    KLADC       +E++I
Sbjct: 351 ENPQQAKLIVDKVLLATRARVAARKAKELTRRKSPLDALGFASKLADCRSKDPMKSEIYI 410

Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528
           VEGDSAGGSAKQ R+   QA++PLRGK+LNV  A  +K+ +N++I++L+QA+G     ++
Sbjct: 411 VEGDSAGGSAKQGRDSEFQAIMPLRGKVLNVEKARLDKMLSNKEIVNLIQAMGTGISDEF 470

Query: 529 REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKS 588
               LRY K++IMTDADVDGAHI +LLLTF ++ M  LI+  +++   PPL+++T G   
Sbjct: 471 DITKLRYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYKVTWGKNL 530

Query: 589 VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648
            Y + E+   + L+  +     K  I R+KGLGEM A QL +T MD   RTLL++++   
Sbjct: 531 KYVYSEDELNETLKSIE----TKPGIQRYKGLGEMNAEQLWDTTMDPATRTLLQIKLEDA 586

Query: 649 LNSLKDTQDSIN 660
           +    +     +
Sbjct: 587 I----EADQVFS 594


>gi|260101486|ref|ZP_05751723.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus helveticus
           DSM 20075]
 gi|260084700|gb|EEW68820.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus helveticus
           DSM 20075]
          Length = 653

 Score =  574 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 242/654 (37%), Positives = 360/654 (55%), Gaps = 33/654 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ YD SSI+IL GLE VR RPGMYIG TD   L+ L  E++DN++DE +AG+   I+
Sbjct: 7   AKANTYDDSSIQILHGLEAVRKRPGMYIGSTDIHGLNQLVYEIVDNSVDEAMAGFGKEID 66

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +  +T+ D GRG+P   H     K T+E+ILT LHAGGKF    Y+ SGGLHGVG
Sbjct: 67  VTIHKDNSVTIRDFGRGMPTGMHK--SGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVG 124

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
            SVVNALS  + V V R    + ++F +G  P+  L+   K ++  GT ITF+PD  IF 
Sbjct: 125 SSVVNALSSYMKVRVVRDGKAYEEEFEKGGHPIGTLKCLGKTKDPTGTTITFKPDAMIFS 184

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               +    + +  +  A+L   VK   + +++          + F +  G+K+++    
Sbjct: 185 TT-KYKYETIQERIRESAFLLKGVKFVLTDERDPE------HHDVFQYDDGIKSFVSYLN 237

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRV 336
           E +    S++F  + ++ G     +E++  + +   E   S+ N + T +GGTHESG R 
Sbjct: 238 EGK-GTISDVFYFEGKQDG---MEIEFSGQYSDGYSENLVSFVNNVRTGDGGTHESGARS 293

Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392
             TR    YA+      K+  +I   D       +LSV I E   EF GQTK KL +  A
Sbjct: 294 GFTRAFNDYAKKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQA 353

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLP 450
           +  V++ + +   +YL++N   A +L++      + R   +K R+ +R      +K  L 
Sbjct: 354 RSAVDSLVYEKMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLS 413

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + I  N
Sbjct: 414 GKLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKN 473

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    +++  +D  Y+KVIIMTDAD DGAHI  LLLTFFY+ M  +IE+ 
Sbjct: 474 EEINTMIYTIGAGVGAEFNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEKG 533

Query: 571 HLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +++  PPL+R+ +G     +  YA  +E     L E +K  K    + RFKGLGEM A 
Sbjct: 534 KIYIALPPLYRLQKGRGKKAQIQYAWTDEE----LAEDEKAMKRGYSLQRFKGLGEMNAE 589

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL +T M+   R L+RV+I+         +  +  LMG K   R K+I+E   F
Sbjct: 590 QLWQTTMNPESRMLIRVKIDD----AALAERRVTTLMGDKVAARRKWIEENVKF 639


>gi|296127875|ref|YP_003635125.1| DNA gyrase, B subunit [Cellulomonas flavigena DSM 20109]
 gi|296019690|gb|ADG72926.1| DNA gyrase, B subunit [Cellulomonas flavigena DSM 20109]
          Length = 698

 Score =  574 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 249/709 (35%), Positives = 366/709 (51%), Gaps = 36/709 (5%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSAS-DNYDASSIRILEGLEPVR 59
           M D       + P   Q  + + +  G  P   A      S   YDAS+I +LEGLE VR
Sbjct: 1   MAD------QSTPRDPQDETAEGQDPGGAPTPDAPPAAKPSGSTYDASNITVLEGLEAVR 54

Query: 60  MRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119
            RPGMYIG T  + LHHL  EV+DN++DE +AGY + IEV+L  +G + V DNGRGIPV 
Sbjct: 55  KRPGMYIGSTGARGLHHLVYEVVDNSVDEALAGYCDTIEVTLLADGGVRVTDNGRGIPVA 114

Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179
            HP    + T+E+++T LHAGGKF    Y +SGGLHGVGISVVNALS  +   V R    
Sbjct: 115 IHP-TEGRPTVEVVMTILHAGGKFGGGGYAVSGGLHGVGISVVNALSSRVETVVKRDGYA 173

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
           +SQ F+ G       ++    ++ GT  TF  D  IF     +D   L    Q  A+L+ 
Sbjct: 174 WSQSFADGGKPVGELRQGPATDETGTSQTFWADGTIFET-TEYDFETLRARFQQYAFLNK 232

Query: 240 RVKTCWSCDKEIAEKY--------------GIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
            +K   + ++                           + + GGL  Y++     + +   
Sbjct: 233 GLKISLTDERPQHTGTEDEVTGETPSEAPATTARNVTYKYDGGLVDYVKHLNSAKKVDHV 292

Query: 286 EIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
                  E +  T R +VE A+ W       + ++ NTI T EGGTHE G R A+T  + 
Sbjct: 293 HPDVIDFEAEDTTRRISVEIALQWTTAYSESVHTFANTISTTEGGTHEEGFRAAMTSLMN 352

Query: 344 KYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
           +YA       ++  ++  DD+      ++SV + EP+F GQTKTKL + +A+R V+  + 
Sbjct: 353 RYARDKGILKEKDENLTGDDIREGLTAVISVKLGEPQFEGQTKTKLGNTEAKRFVQTVVN 412

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNI 460
           D    +L  +P EA  ++   I+ +  R+  RK RE  R+   +    +PGKL DC  N 
Sbjct: 413 DQLGAWLDAHPSEAKDVIRKSIQAAAARMAARKAREATRRKGLLESNSMPGKLRDCQSNN 472

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
               E+FIVEGDSAGGSA + RN   QA++P+RGKILNV  A  +K   NQ++  L+ A 
Sbjct: 473 PAECEVFIVEGDSAGGSAVRGRNPRTQAIMPIRGKILNVERARLDKALGNQEVQALITAF 532

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           G      +    LRY K+++M DADVDG HI +LLLT  ++ M  LI    +++  PPL+
Sbjct: 533 GTGIGEDFDVSKLRYHKIVLMADADVDGQHIRTLLLTLLFRYMPQLITGGFVYMAQPPLY 592

Query: 581 RITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDAN 636
           RI        Y + +  +  ++ + + +G+   +   + R+KGLGEM  ++L ET M   
Sbjct: 593 RIKWSNAPHDYVYSDRERDAVITDGRANGRRLPKENGVQRYKGLGEMDYTELWETTMSPE 652

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            RTLL+V +++         +  + LMG   + R  FIQ  A  +  + 
Sbjct: 653 HRTLLQVTLDE----AAAADEIFSVLMGEDVEARRGFIQRNAKDVRFLD 697


>gi|313665344|ref|YP_004047215.1| DNA topoisomerase IV, B subunit [Mycoplasma leachii PG50]
 gi|312949281|gb|ADR23877.1| DNA topoisomerase IV, B subunit [Mycoplasma leachii PG50]
          Length = 643

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 245/646 (37%), Positives = 351/646 (54%), Gaps = 28/646 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             YD S+I++LEGLE VR RPGMYIG TD K LHHL  E++DNA+DE +AGY   I+V+L
Sbjct: 5   KKYDESAIQVLEGLEAVRKRPGMYIGSTDNKGLHHLVWEIVDNAIDEALAGYCTQIDVTL 64

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +  +T+ DNGRGIP   H     KST E+I + LHAGGKFD++ Y+ SGGLHGVG SV
Sbjct: 65  EKDNSITISDNGRGIPTGMHK--TGKSTPEVIFSILHAGGKFDSTAYKSSGGLHGVGSSV 122

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
            NALS     T+ R   I   +F  G  L           K GT I F PD  IF +   
Sbjct: 123 TNALSKRFKATIYRDKKIHEIEFKNGGKLEKPLTFIANTYKTGTTINFLPDDSIFSN-TK 181

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F+ + + +  +  A L+  +K   S               E+ F  GL  +++  ++++ 
Sbjct: 182 FNFSLISERLKESALLNSGLKITLSD-------LISNRYVEYQFEDGLVEFIKELVDDKK 234

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
           +I+  I      K       +++     ++N  I  + N + T +GGTH  G +  L R 
Sbjct: 235 VITDIITINNESKNIIAEIALQYTE---DDNEIILGFANNVKTSDGGTHLVGFKSGLIRA 291

Query: 342 IKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVEN 398
           I  YA+  +  K    + S+DL    V I++V I E   E+ GQTK+KL + DA+  VE 
Sbjct: 292 INDYAKEQKILKDKAKLDSNDLREGLVAIVTVKIPENLIEYEGQTKSKLGTSDAKTVVEQ 351

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP---GKLAD 455
            + +   ++L++N + A K++E  +   + R+  ++ R+  +    +K       GKL  
Sbjct: 352 IVYEFMSYWLIENKVLANKIIENALNAQKARIAAKQARQAIKSVKGKKNINKLMLGKLTP 411

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
                    EL++VEGDSAGGSAK  R+R+ QA+LPLRGK++N   A    +  N++I  
Sbjct: 412 AQGKKREINELYLVEGDSAGGSAKSGRDRNFQAILPLRGKVINSEKAKLVDLLKNEEIQS 471

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ A+G      +   D+ Y K+IIMTDAD DGAHI +LLLTFFY+ M DLI  K +++ 
Sbjct: 472 IINAIGTGVGKDFDISDINYGKIIIMTDADTDGAHIQTLLLTFFYRHMKDLIVHKKVYIA 531

Query: 576 SPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
            PPL++IT   KS  Y  DEE     L EF K    K EI R+KGLGEM A QL +T MD
Sbjct: 532 LPPLYKITFNDKSFIYLWDEEE----LNEFNKTNTKKYEIQRYKGLGEMNADQLWQTTMD 587

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
              R +++V I   L      +     LMG   ++R  +IQE   F
Sbjct: 588 PKNRKIIQVTITDGL----LAERMFKTLMGDDVEKRKLWIQENVKF 629


>gi|21904202|gb|AAM79083.1| putative DNA gyrase, subunit B [Streptococcus pyogenes MGAS315]
          Length = 620

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 243/630 (38%), Positives = 362/630 (57%), Gaps = 24/630 (3%)

Query: 60  MRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119
           MRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I+V ++ +  +TVVD+GRGIPV+
Sbjct: 1   MRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHIKVFIEADNSITVVDDGRGIPVD 60

Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179
              K   +  +E + T LHAGGKF   +Y++SGGLHGVG SVVNALS +L V V +   I
Sbjct: 61  IQVK-TGRPAVETVFTVLHAGGKFGGGSYKVSGGLHGVGSSVVNALSTQLDVRVYKNGQI 119

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
             Q+F RG  ++ LE          T + F PDP+IF +   FD + L K  Q  A+L+ 
Sbjct: 120 HYQEFKRGAVVADLEVIGTTDVTG-TTVHFTPDPEIFTETTQFDYSVLAKRIQELAFLNR 178

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            +K   +  +   E     ++E F++ GG+ +Y++   + + +I         E +G   
Sbjct: 179 GLKISITDKRSGME-----QEEHFHYEGGIGSYVEFLNDKKDVIFETPIYTDGELEGI-- 231

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
             VE A+ +       + S+ N I T EGGTHE G R ALTR I  YA+  +   +   +
Sbjct: 232 -AVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRAALTRVINDYAKKNKILKENEDN 290

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           +  +D+      ++SV    P+F GQTKTKL + +  +       + F  +L++NP  A 
Sbjct: 291 LTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFQRFLLENPQVAR 350

Query: 417 KLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
           K++E  I  S+ R+  ++ RE   +K+ +    LPGKLADCS N A+  ELFIVEGDSAG
Sbjct: 351 KIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDANQNELFIVEGDSAG 410

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           GSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I  L  A+G    + +     RY
Sbjct: 411 GSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGFGADFDVSKARY 470

Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHD- 593
           +K++IMTDADVDGAHI +LLLT  Y+ M  ++E  ++++  PP++ +  G++   Y    
Sbjct: 471 QKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKEYIQPG 530

Query: 594 ---EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
              E+  +  LE++   G+ K  + R+KGLGEM   QL ET MD   R + RV ++    
Sbjct: 531 IDQEDQLKTALEKYS-IGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDD--- 586

Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASF 680
              +     + LMG + + R  FI+E A +
Sbjct: 587 -AAEADKVFDMLMGDRVEPRRDFIEENAVY 615


>gi|172057602|ref|YP_001814062.1| DNA topoisomerase IV subunit B [Exiguobacterium sibiricum 255-15]
 gi|171990123|gb|ACB61045.1| DNA topoisomerase IV, B subunit [Exiguobacterium sibiricum 255-15]
          Length = 653

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 243/650 (37%), Positives = 355/650 (54%), Gaps = 33/650 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DE +AG+   I+V +
Sbjct: 6   NNYNDDAIQVLEGLEAVRKRPGMYIGSTDHRGLHHLVYEIVDNAIDEALAGFGEQIDVII 65

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  +TV D+GRG+P   H     K T E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 66  HKDNAITVRDHGRGMPTGMH--ASGKPTAEVIFTVLHAGGKFGQGGYKTSGGLHGVGASV 123

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS +L VT+ R    F Q F  G        +     ++GT + F+PD KIF     
Sbjct: 124 VNALSTQLKVTIYRDGKQFEQTFEDGGIPKTTLLETGTTRQKGTSVYFKPDGKIFST-LT 182

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L +  +  A+L   +K   + ++         + + F +  G+  ++    +++ 
Sbjct: 183 YNYDTLAERLRESAFLLKGLKITLTDERS-------DKADTFQYEDGVSEFVGYLNDDKD 235

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340
            +   +    TE        V+ A  + +   E   S+ N + T +GGTHE G + A+TR
Sbjct: 236 TLHPTVAFEGTEND----IEVDIAFQFTDAYSENVLSFVNNVRTRDGGTHEVGAKTAMTR 291

Query: 341 GIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
            + +YA       ++  ++  +D+      I+S+ I E   +F GQTK+KL S +A+ + 
Sbjct: 292 VMNEYARKNTLLKEKDKNLDGNDIREGLTMIVSIRIPEEFLQFEGQTKSKLGSPEARTSC 351

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK--LRLPGKLA 454
           +  +      YL +NP  AT L++  I  ++ R   RK RE  R    +K    L GKL 
Sbjct: 352 DAVITRRLSTYLEENPQTATLLIKKAIRAAQAREAARKAREEARNGKKKKRSSILNGKLT 411

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
             +   A   ELF+VEGDSAGGSAKQ RNR+ QA+LPLRGK+LN   A    I  N++I 
Sbjct: 412 PAASKNAEKNELFLVEGDSAGGSAKQGRNRTFQAILPLRGKVLNTEKAKLADIMKNEEIN 471

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++ A+G    + +   D  ++KVIIMTDAD DGAHI  LLLTFF++ M  LI+   +F+
Sbjct: 472 MIIHAIGSGVGADFDLSDCNFDKVIIMTDADTDGAHIQVLLLTFFFRYMRPLIDAGKVFV 531

Query: 575 ISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
             PPL+R+++G     K  Y  DEE   K  ++F K       I R+KGLGEM A QL E
Sbjct: 532 ALPPLYRVSKGKGKSEKFEYVWDEETLAKTTKKFGK----GYMIQRYKGLGEMNAPQLWE 587

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           T MD   RTL+RV I+         +  ++ LMG     R  +I++  +F
Sbjct: 588 TTMDPETRTLIRVTIDD----AAVAEKRVSVLMGDNVGHRRSWIEDNVAF 633


>gi|328466147|gb|EGF37306.1| DNA topoisomerase IV subunit B [Lactobacillus helveticus MTCC 5463]
          Length = 648

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 242/654 (37%), Positives = 360/654 (55%), Gaps = 33/654 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ YD SSI+IL GLE VR RPGMYIG TD   L+ L  E++DN++DE +AG+   I+
Sbjct: 2   AKANTYDDSSIQILHGLEAVRKRPGMYIGSTDIHGLNQLVYEIVDNSVDEAMAGFGKEID 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +  +T+ D GRG+P   H     K T+E+ILT LHAGGKF    Y+ SGGLHGVG
Sbjct: 62  VTIHKDNSVTIRDFGRGMPTGMHK--SGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
            SVVNALS  + V V R    + ++F +G  P+  L+   K ++  GT ITF+PD  IF 
Sbjct: 120 SSVVNALSSYMKVRVVRDGKAYEEEFEKGGHPIGTLKCLGKTKDPTGTTITFKPDAMIFS 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               +    + +  +  A+L   VK   + +++          + F +  G+K+++    
Sbjct: 180 -ITKYKYETIQERIRESAFLLKGVKFVLTDERDPE------HHDVFQYDDGIKSFVSYLN 232

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRV 336
           E +    S++F  + ++ G     +E++  + +   E   S+ N + T +GGTHESG R 
Sbjct: 233 EGK-GTISDVFYFEGKQDG---MEIEFSGQYSDGYSENLVSFVNNVRTGDGGTHESGARS 288

Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392
             TR    YA+      K+  +I   D       +LSV I E   EF GQTK KL +  A
Sbjct: 289 GFTRAFNDYAKKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTSQA 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLP 450
           +  V++ + +   +YL++N   A +L++      + R   +K R+ +R      +K  L 
Sbjct: 349 RSAVDSLVYEKMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLS 408

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + I  N
Sbjct: 409 GKLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKN 468

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    +++  +D  Y+KVIIMTDAD DGAHI  LLLTFFY+ M  +IE+ 
Sbjct: 469 EEINTMIYTIGAGVGAEFNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEKG 528

Query: 571 HLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +++  PPL+R+ +G     +  YA  +E     L E +K  K    + RFKGLGEM A 
Sbjct: 529 KIYIALPPLYRLQKGRGKKAQIQYAWTDEE----LAEDEKAIKRGYSLQRFKGLGEMNAE 584

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL +T M+   R L+RV+I+         +  +  LMG K   R K+I+E   F
Sbjct: 585 QLWQTTMNPESRMLIRVKIDD----AALAERRVTTLMGDKVAARRKWIEENVKF 634


>gi|50365125|ref|YP_053550.1| DNA topoisomerase IV subunit B [Mesoplasma florum L1]
 gi|50363681|gb|AAT75666.1| DNA topoisomerase IV subunit B [Mesoplasma florum L1]
          Length = 647

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 249/657 (37%), Positives = 357/657 (54%), Gaps = 30/657 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +    YD S+I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AGY   I 
Sbjct: 2   AKEVKYDESAIQVLEGLEAVRKRPGMYIGSTDVRGLHHLVWEIVDNSIDEALAGYCTEIN 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+L+ NG +TV DNGRG+P+  H     + T E+I + LHAGGKF  S Y+ SGGLHGVG
Sbjct: 62  VTLEKNGSVTVADNGRGVPIGMH--STGRPTPEVIFSVLHAGGKFGGSGYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS + +VT+ R   +   +F+ G  L+    +    NK GT + F PD  IF  
Sbjct: 120 SSVVNALSKKFNVTIYRDKKVNEIEFTNGGKLNIPLTEVGTTNKTGTVVNFLPDDSIFNT 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   + +  +  A L+  +K   S            +  E+ F  GL  +++    
Sbjct: 180 -TKFNFTTISERLKESALLNSGLKITISDK-------VNDKFVEYQFENGLVEFVKELSS 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
             + I+  +      K+      +++     + N  I  + N + T +GGTH +G +  L
Sbjct: 232 EFTHITDPVVITGESKRIASEICIQYTE---DFNETILGFANNVKTGDGGTHITGFKTGL 288

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394
            R I  YA+  +    +   + S+DL    V I++V I E   E+ GQTK KL + DA+ 
Sbjct: 289 VRAINDYAKNNKILKDKDPRLDSNDLREGLVAIVTVKIPEDLIEYEGQTKGKLGTPDAKT 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG--K 452
            VE    D  + +L++N + ATK++E  +     R   RK R+  R +  +K       K
Sbjct: 349 AVEQVTYDFMNFWLIENKVPATKIIEKAMLARRAREEARKARQAIRDSKGKKTTRAMLGK 408

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L           EL++VEGDSAGGSAK  R+R+ QA+LPLRGK++N   A   ++  N++
Sbjct: 409 LTPAQGRKKEINELYLVEGDSAGGSAKSGRDRTFQAILPLRGKVINSEKAKLTELMKNEE 468

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++ A+G      +   D+ Y KVIIMTDAD DGAHI +LLLTFFY+ M DLI  KH+
Sbjct: 469 IQTIITAIGAGIGQDFDVSDINYGKVIIMTDADTDGAHIQTLLLTFFYRYMKDLIINKHV 528

Query: 573 FLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           F+  PPL+++T    K +Y  DE+     L +F K    K EI R+KGLGEM A QL ET
Sbjct: 529 FIALPPLYKLTFSDRKFIYLWDEQE----LADFAKTATKKYEIQRYKGLGEMNADQLWET 584

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF--IDDVGT 686
            M+  +R L+ V I   L      + S   LMG  A++R  +IQE   F   D+   
Sbjct: 585 TMNPAQRKLIVVTIEDALM----AEKSFRTLMGEDAEKRKVWIQENVKFTLEDNDDA 637


>gi|158311873|ref|YP_001504381.1| DNA gyrase subunit B [Frankia sp. EAN1pec]
 gi|158107278|gb|ABW09475.1| DNA gyrase, B subunit [Frankia sp. EAN1pec]
          Length = 652

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 252/659 (38%), Positives = 358/659 (54%), Gaps = 27/659 (4%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YDASSI++LEGLE VR RPGMYIG T E+ LHHL  EV+DNA+DE +AGY + I V+L  
Sbjct: 3   YDASSIKVLEGLEAVRKRPGMYIGSTGERGLHHLVYEVVDNAVDEALAGYCDTISVTLLA 62

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G + V DNGRGIPV  HP      T+E++LTTLHAGGKFD  +Y +SGGLHGVG+SVVN
Sbjct: 63  DGGVRVTDNGRGIPVGEHP-VKKIPTVELVLTTLHAGGKFDGESYAVSGGLHGVGVSVVN 121

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS  L V +      + Q +    P  PL +    +      ITF  DP IF     + 
Sbjct: 122 ALSTRLDVEIQTDGHSWFQPYENSRPARPLAQTGTSKKTGT-TITFWADPTIFET-TTYK 179

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDK---EIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
              L +  Q  A+L+  +      ++      E+   P +  F +  GL  ++      +
Sbjct: 180 YETLFRRLQEMAFLNKGLSITLRDERGKATETEEAAEPTEVTFKYDNGLVDFVGHLNATK 239

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
             +   + + +++  G      E A+ W       + ++ NTI T EGGTHE G R ALT
Sbjct: 240 DAVHRSVISLESKGTGI---EAELAMQWNSGYNESVYTFANTINTHEGGTHEEGFRAALT 296

Query: 340 RGIKKYAELTQNKRAISI---------ISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
             +  YA+     + +             DD+      I+SV + +P+F GQTKTKL + 
Sbjct: 297 SAVNAYAKDQNLLKPVKAGSKNSDERLSGDDIREGLTAIISVKLAQPQFEGQTKTKLGNT 356

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           +A++ V+         +   N  EA  ++   ++    R+  R+ R+   RK  +    L
Sbjct: 357 EAKKFVQEMCYSALKDWFEVNRTEARSIVSKALDAQRARIAARQARDLTRRKGLLGGTGL 416

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC        EL+IVEGDSAGGSAK  R+   QA+LPLRGKILNV  A  +++  
Sbjct: 417 PGKLADCQFTDPERCELYIVEGDSAGGSAKGGRDSKFQAILPLRGKILNVEKARIDRVLK 476

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N ++  L+QALGC     +    LRY K+++M DADVDG HI +LLLT  ++ M  L+E 
Sbjct: 477 NTEVQALIQALGCGIHDDFDIAKLRYHKIVLMADADVDGQHIRTLLLTLLFRFMRPLVEA 536

Query: 570 KHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKG--KIEISRFKGLGEMLAS 626
            H+FL  PPL++I  G +   YA+ +  +  +LE+  + G+   K  I RFKGLGEM A+
Sbjct: 537 GHVFLAQPPLYKIKWGREDWEYAYSDRERDGLLEQGVEAGRKLPKDAIQRFKGLGEMNAT 596

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +L +T MD +KR LL+V ++          +  + LMG   D R  FIQ  A  +  + 
Sbjct: 597 ELWDTTMDPDKRILLQVTLDD----AAVADELFSVLMGEDVDARRSFIQRNAKDVRFLD 651


>gi|325956844|ref|YP_004292256.1| DNA topoisomerase IV subunit B [Lactobacillus acidophilus 30SC]
 gi|325333409|gb|ADZ07317.1| DNA topoisomerase IV subunit B [Lactobacillus acidophilus 30SC]
          Length = 648

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 246/654 (37%), Positives = 359/654 (54%), Gaps = 33/654 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ YD SSI+IL GLE VR RPGMYIG TD   L+ L  E++DN++DE +AG+   I+
Sbjct: 2   AKANTYDDSSIQILHGLEAVRKRPGMYIGSTDIHGLNQLVYEIVDNSVDEAMAGFGKEID 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +  +TV D GRG+P   H     K T+E+ILT LHAGGKF    Y+ SGGLHGVG
Sbjct: 62  VTIHKDNSVTVRDFGRGMPTGMHK--SGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
            SVVNALS  + V V R    + ++F  G  P+  L+   K ++K GT ITF+PD  IF 
Sbjct: 120 SSVVNALSSYMKVRVVRDGKAYEEEFKNGGHPVGTLKCVGKTKDKTGTTITFKPDQTIFS 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               +    + +  +  ++L   VK   + ++E          + F +  G+K+++    
Sbjct: 180 TT-KYKYETIQERIRESSFLLKGVKFVLTDEREPE------HHDVFQYDDGIKSFVSYLN 232

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRV 336
           E +    S++F  + ++ G     +E+A  + +   E   S+ N + T +GGTHESG R 
Sbjct: 233 EGK-GTISDVFYFEGKQDG---MEIEFAGQYSDGYSENLVSFVNNVRTGDGGTHESGARS 288

Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392
             TR    YA+      K+  +I   D       +LSV I E   EF GQTK KL +  A
Sbjct: 289 GFTRAFNDYAKKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQA 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLP 450
           +  V++ + +   +YL++N   A +L++      + R   +K R+ +R      +K  L 
Sbjct: 349 RSAVDSLVYEKMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLS 408

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + I  N
Sbjct: 409 GKLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKN 468

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    +++  +D  Y+KVIIMTDAD DGAHI  LLLTFFY+ M  +IE+ 
Sbjct: 469 EEINTMIYTIGAGVGTEFNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEKG 528

Query: 571 HLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +++  PPL+R+ +G     K  YA  +E     L E +K       + RFKGLGEM A 
Sbjct: 529 KVYIALPPLYRLQKGRGKKSKIQYAWTDEE----LAEDEKKMGRGYSLQRFKGLGEMNAE 584

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL +T MD   R L+RV+I+         +  +  LMG K   R K+I+E   F
Sbjct: 585 QLWQTTMDPESRMLIRVKIDD----AALAERRVTTLMGDKVAARRKWIEENVKF 634


>gi|160914998|ref|ZP_02077211.1| hypothetical protein EUBDOL_01005 [Eubacterium dolichum DSM 3991]
 gi|158432797|gb|EDP11086.1| hypothetical protein EUBDOL_01005 [Eubacterium dolichum DSM 3991]
          Length = 643

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 236/650 (36%), Positives = 349/650 (53%), Gaps = 29/650 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A   YD SSI+IL+GLE VR RPGMYIG TD + LHHL  E++DN++DE + GY + I +
Sbjct: 2   AEKVYDGSSIQILDGLEAVRKRPGMYIGSTDRRGLHHLVWEIVDNSIDEALNGYGDTIRI 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN-STYEISGGLHGVG 158
           +L+    + V D+GRG+PV+ H        +++I T LHAGGKF +   Y+ SGGLHGVG
Sbjct: 62  TLEEGDVICVEDHGRGMPVDMH--ASGVPAVQVIYTVLHAGGKFTSEGGYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS+ + VT+ R   I   +F  G       K     NK G+ + F+ D  IF  
Sbjct: 120 ASVVNALSEWVEVTIHRDGKIHQIRFEDGGSKVGKLKVLGKTNKTGSIVRFKADKHIFST 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              +  +++ +  Q  A+L   +      ++   E+        +++  GL  ++    E
Sbjct: 180 T-KYSFSQIAERAQEDAFLLEGLCLEVRDERVGKERE-----VRYHYANGLTAFMDYLHE 233

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           ++      +          +   V+ A  + +E    I S+ N + T +GGTHE+G + A
Sbjct: 234 DKQTFHQPVAFSGM----VNDIKVDCAFQYTDEYQENIFSFVNIVRTKDGGTHETGAKNA 289

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
            T+   +YA        +  +    D+      ILS+ I E   +F GQTK KL + +A+
Sbjct: 290 FTKVFNEYARRNGILKDKDKNFEGSDVREGLTIILSLGIPENLLQFEGQTKGKLGTPEAK 349

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL---RLP 450
             V+  + +    +L +N   A  L++ +   S+ R   RK RE  RK   +      L 
Sbjct: 350 NAVDQLVSEKLSFWLEENKELALTLIKKMQRASQAREAARKAREDARKGKAKGKSEKILS 409

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLA      A   EL++VEGDSAGGSAKQ R+   QA+LPLRGK+LN   A    I  N
Sbjct: 410 GKLASAQSKDARKKELYLVEGDSAGGSAKQGRDSRYQAILPLRGKVLNTEKASIANIEKN 469

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           +++  ++ ALG    + +  ED  Y KVIIMTDAD DGAHI +LLLTFFY+ M +LIE+ 
Sbjct: 470 EELNTIIHALGAGVGANFHAEDASYHKVIIMTDADTDGAHIQTLLLTFFYRYMKELIEKG 529

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
            +++  PPL+++ +G +  YA  +E   +I + F K       + R+KGLGEM A QL E
Sbjct: 530 MVYIALPPLYKLQKGKEIQYAWSDEELDRIRKTFPK----GYTLQRYKGLGEMNADQLWE 585

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           T M    RTL++V I+         +  ++ LMG KAD R  +I++  SF
Sbjct: 586 TTMSPATRTLIQVTIDDAF----LAEKRVSVLMGDKADVRRTWIEDNVSF 631


>gi|325283469|ref|YP_004256010.1| DNA topoisomerase (ATP-hydrolyzing) [Deinococcus proteolyticus MRP]
 gi|324315278|gb|ADY26393.1| DNA topoisomerase (ATP-hydrolyzing) [Deinococcus proteolyticus MRP]
          Length = 655

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 258/659 (39%), Positives = 364/659 (55%), Gaps = 22/659 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYI-GGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            + + NY A SI IL+GLE VR RPGMY+ GGT     H L +E+IDNA+DE +AG+AN 
Sbjct: 2   TNPNSNYTADSISILKGLEAVRKRPGMYVQGGTGIDGYHQLLTEIIDNAIDEGLAGFANE 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V++  +G  TV DNGRGIPV+   K   +S +E+I T LHAGGKF    Y++SGGLHG
Sbjct: 62  ITVTMHEDGSATVTDNGRGIPVDIM-KSEGRSAIEVIFTELHAGGKFGQGAYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK--RGTRITFRPDPK 214
           VG SVVNALS  L VTV +   +   +F +G+  +PLE   K        T+++F PDP 
Sbjct: 121 VGSSVVNALSTYLDVTVNKGGQLHHIRFEKGVVTTPLEVLGKTPKDVTWSTKVSFHPDPA 180

Query: 215 IFGDKAG-FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +F +    FD  R+ +  +  AYL+G  K     ++      G   +E F+  GG+  + 
Sbjct: 181 VFSEFENLFDYDRIRRRLRELAYLTGL-KIVLRDER-AVLHAGEVREETFHEQGGIANFA 238

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESG 333
            + + + + +  +               V +  A    +  I +Y N I T +GGT  +G
Sbjct: 239 ASLVSDSTKLLYDQPIVMRGTSNDVEVEVAFIHANTYSSDNILTYANMIRTRDGGTPLTG 298

Query: 334 LRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            + A TR + KYA+     ++ +     DDL+     ++SV + +P+F  Q K KL++ +
Sbjct: 299 FKTAYTRILNKYAKDKNLVKSGNPAPSGDDLLEGIYCVISVKLGDPQFESQAKVKLLNSE 358

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLP 450
           AQ  V   + + F  +L +NP     ++E   E +  R   RK    V R   +    LP
Sbjct: 359 AQTAVNAIVGEKFAEFLEENPKVGKTIVEKAAEAARAREAARKARDIVRRSNPLENDDLP 418

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS      +ELFIVEG+SAGGSAK  R R  QA+LPLRGKILNV  A   K   N
Sbjct: 419 GKLADCSSQDPSESELFIVEGNSAGGSAKSGRERRFQAILPLRGKILNVEKAELNKSLKN 478

Query: 511 QQIMDLVQALGCRT-----RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
            +I  ++ A+G        + ++  E LRY K+IIMTDAD+DG HI +LLLTFF++ M  
Sbjct: 479 AEIRSMIAAIGAGVDGSGDQLRFDVEQLRYHKIIIMTDADMDGGHITTLLLTFFFRYMKP 538

Query: 566 LIEQKHLFLISPPLFRITQGTKS--VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
           ++EQ HL++  PPL+RIT G +    Y ++++  ++ +    K GK K EI RFKGLGEM
Sbjct: 539 VVEQGHLYIAQPPLYRITVGRQKTGEYLYNDDELRQHVARANKEGK-KFEIQRFKGLGEM 597

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            A QL ET M+   R L +V I   L       +    LMG+    R  FIQE A F +
Sbjct: 598 NADQLWETTMNPETRVLKQVAIEDLLV----ANEIFEDLMGSDVAPRKVFIQENARFAE 652


>gi|291455697|ref|ZP_06595087.1| DNA gyrase, B subunit [Bifidobacterium breve DSM 20213]
 gi|291382625|gb|EFE90143.1| DNA gyrase, B subunit [Bifidobacterium breve DSM 20213]
          Length = 712

 Score =  573 bits (1476), Expect = e-161,   Method: Composition-based stats.
 Identities = 248/702 (35%), Positives = 368/702 (52%), Gaps = 29/702 (4%)

Query: 8   LFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIG 67
           L      + Q  +   + +             A ++Y+AS +R+LEGLE VR+RPGMYIG
Sbjct: 17  LAEETSKEEQLKAAAERINNAELTEGELDESMAPEHYEASDLRVLEGLEAVRIRPGMYIG 76

Query: 68  GTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNK 127
            T  + LHHL  E++DN++DE +AGYA+ IEV++  +  + VVD+GRGIPV+  P     
Sbjct: 77  STGPRGLHHLVYEIVDNSVDEALAGYASHIEVTILPDNGIRVVDDGRGIPVDEVP-GEGV 135

Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187
           S +E ++T LHAGGKF    Y +SGGLHGVGISVVNALS  + + V RQ   ++Q +   
Sbjct: 136 SGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTHVDIEVRRQGFHWTQTYVDQ 195

Query: 188 IPLSPLEKKEKV--RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
            P++PL++ E +      GT +TF  DPKIF     +D   L    Q  A+L+  +K   
Sbjct: 196 HPVAPLKQGEPMAEDESTGTSVTFWADPKIFETTI-YDFETLRSRFQQMAFLNKGLKLSL 254

Query: 246 SCDKEIA------------EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
           + ++               E     +   + +  G+K Y+   ++ R     E      E
Sbjct: 255 TDERVTDQAGDEVAGDAEGEPGEKHQTVTYQYLNGIKDYVDYLVKVRKATPVEEDVISFE 314

Query: 294 -KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT-- 349
            +      + E A+ W       + ++ NTI T EGGTHE G R ALT  + +YA     
Sbjct: 315 AEDLKLGISAELAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLVNRYARDKAI 374

Query: 350 QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
              +  ++  DD+      ++SV +  P+F GQTKTKL + +A+  V+  + D    +  
Sbjct: 375 LKDKDENLSGDDVREGLTAVISVKLTNPQFEGQTKTKLGNSEAKTFVQRVMTDKLGDWFD 434

Query: 410 QNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFI 468
            +P EA  +++  IE S  RL  +K RE  R+ +I     +P KL DC  +     ELFI
Sbjct: 435 AHPAEAKNIIQKAIEASRARLAAKKARENTRRKSIFESAGMPDKLKDCQSSNPEECELFI 494

Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528
           VEGDSAGGSA Q RN   QA+LPLRGKILN   A  +++  +  I  L+ A+G      +
Sbjct: 495 VEGDSAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSDTIESLITAVGGGYGEDF 554

Query: 529 REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKS 588
               +RY KVIIM DADVDGAHIA+L LT F++ M  +I   ++++  PPL+R+      
Sbjct: 555 DISKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKWTKGP 614

Query: 589 V-YAHDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644
             + + +  + ++L E K +G+       I R+KGLGEM   +L ET MD   R L +V 
Sbjct: 615 HDFVYTDAERDRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVH 674

Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           I           ++ + LMG + + R  FIQ  A  +  +  
Sbjct: 675 IED----AAAADETFSMLMGDEVEPRRLFIQRNAKNVRWIDA 712


>gi|227893710|ref|ZP_04011515.1| DNA topoisomerase IV subunit B [Lactobacillus ultunensis DSM 16047]
 gi|227864570|gb|EEJ71991.1| DNA topoisomerase IV subunit B [Lactobacillus ultunensis DSM 16047]
          Length = 648

 Score =  573 bits (1476), Expect = e-161,   Method: Composition-based stats.
 Identities = 247/654 (37%), Positives = 357/654 (54%), Gaps = 33/654 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + +  YD SSI+IL GLE VR RPGMYIG TD   L+ L  E++DN++DE +AG+   I+
Sbjct: 2   AKAHTYDDSSIQILHGLEAVRKRPGMYIGSTDIHGLNQLVYEIVDNSVDEAMAGFGKEID 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +  +TV D GRG+P   H     K T+E+ILT LHAGGKF    Y+ SGGLHGVG
Sbjct: 62  VTIHKDNSVTVRDFGRGMPTGMHK--SGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
            SVVNALS  + V V R    + ++F  G  P+  L+   K ++K GT ITF+PD  IF 
Sbjct: 120 SSVVNALSSYMKVRVVRDGKAYEEEFKNGGHPVGTLKCLGKTKDKTGTTITFKPDDSIFS 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               +    + +  +  A+L   VK   + ++E          + F +  G+K+++    
Sbjct: 180 TT-KYKYETIQERIRESAFLLKGVKFVLTDEREPE------HHDIFKYDDGIKSFVSYLN 232

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRV 336
           E +    S++F  + ++ G     +E+A  + +   E   S+ N + T +GGTHESG R 
Sbjct: 233 EGK-GTISDVFYFEGKQDG---MEIEFAGQYSDGYSENLVSFVNNVRTGDGGTHESGARS 288

Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392
             TR    YA+      K+  +I   D       +LSV I E   EF GQTK KL +  A
Sbjct: 289 GFTRAFNDYAKKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQA 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLP 450
           +  V++ + +   +YL++N   A +L++      + R   +K R+ +R      +K  L 
Sbjct: 349 RSAVDSLVYEKMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLS 408

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + I  N
Sbjct: 409 GKLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKN 468

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    +++   D  Y+KVIIMTDAD DGAHI  LLLTFFY+ M  +IE+ 
Sbjct: 469 EEINTMIYTIGAGVGTEFNVNDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEKG 528

Query: 571 HLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +++  PPL+R+ +G     K  YA  +E     L E +K       + RFKGLGEM A 
Sbjct: 529 KVYIALPPLYRLQKGRGKKSKVQYAWTDEE----LAEDEKKMGRGYSLQRFKGLGEMNAE 584

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL +T MD   R L+RV+I+         +  +  LMG K   R K+I+E   F
Sbjct: 585 QLWQTTMDPESRMLIRVKIDD----AALAERRVTTLMGDKVAARRKWIEENVKF 634


>gi|229817001|ref|ZP_04447283.1| hypothetical protein BIFANG_02256 [Bifidobacterium angulatum DSM
           20098]
 gi|229785746|gb|EEP21860.1| hypothetical protein BIFANG_02256 [Bifidobacterium angulatum DSM
           20098]
          Length = 717

 Score =  573 bits (1476), Expect = e-161,   Method: Composition-based stats.
 Identities = 245/708 (34%), Positives = 372/708 (52%), Gaps = 29/708 (4%)

Query: 2   TDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMR 61
           +  +  L +    + Q  +     +               ++YDAS +++LEGLE VR+R
Sbjct: 16  SSLADSLENATSKEEQLKAVDEHINNAELQDGELDESMTPEHYDASDLKVLEGLEAVRIR 75

Query: 62  PGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENH 121
           PGMYIG T  + LHHL  E++DN++DE +AGYA+ IEV++  +  + VVD+GRGIPV+  
Sbjct: 76  PGMYIGSTGPRGLHHLVYEIVDNSVDEALAGYASHIEVTILPDNGIRVVDDGRGIPVDIV 135

Query: 122 PKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFS 181
           P     S +E ++T LHAGGKF    Y +SGGLHGVGISVVNALS  + + V RQ   ++
Sbjct: 136 P-GEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHWT 194

Query: 182 QKFSRGIPLSPLEKKEKVRNK--RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
           Q +    P +PL + + + +    GT +TF  DP IF     +D   L    Q  A+L+ 
Sbjct: 195 QTYKDQHPTAPLAQGQPMTDDESTGTSVTFWADPAIFET-TTYDFETLRSRFQQMAFLNK 253

Query: 240 RVKTCWSCDKEIAEKYGI------------PEKEEFYFPGGLKTYLQTKLENRSLISSEI 287
            +K   +  +++ E                 +   + +  G+K Y+   +++R  +  E 
Sbjct: 254 GLKITLTDLRQLDEAGDEVAGDGDNAAEELHQTATYQYVNGIKDYVDYLVKSRKAVPVED 313

Query: 288 FTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY 345
                + +      + E A+ W       + ++ NTI T EGGTHE G R ALT  + +Y
Sbjct: 314 EVINFDAEDLKLGISAEIAMEWTTAYSESVHTFANTISTTEGGTHEEGFRAALTSLVNRY 373

Query: 346 AELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDP 403
           A        +  ++  DD+      ++SV +  P+F GQTKTKL + +A+  V+  + D 
Sbjct: 374 AREKNILKDKDENLSGDDVREGLTAVVSVKLTNPQFEGQTKTKLGNSEAKTFVQRVMTDK 433

Query: 404 FDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAH 462
              +   +P EA  +++  IE S  RL  +K RE  R+ +I     +P KL DC  N   
Sbjct: 434 LGDWFDAHPSEAKNVIQKAIEASRARLAAKKARENTRRKSIFESAGMPDKLKDCQSNNPE 493

Query: 463 GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
             ELFIVEGDSAGGSA Q RN   QA+LPLRGKILN   A  +++  +  I  L+ A+G 
Sbjct: 494 ECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSDTIESLITAVGG 553

Query: 523 RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI 582
                +    +RY KVIIM DADVDGAHIA+L LT F++ M  +I   ++++  PPL+R+
Sbjct: 554 GYGEDFDINKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRL 613

Query: 583 TQGTKSV-YAHDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKR 638
                +  + + +  + ++L E K  G+       I R+KGLGEM   +L ET MD   R
Sbjct: 614 KWTKGAHDFVYTDAERDRVLAEGKAKGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHR 673

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
            L +V+I       +   ++ + LMG + + R  FIQ  A  +  +  
Sbjct: 674 ILKQVQIED----AEAADETFSMLMGDEVEPRRLFIQRNARNVSWIDA 717


>gi|293336227|ref|NP_001168561.1| hypothetical protein LOC100382343 [Zea mays]
 gi|223949177|gb|ACN28672.1| unknown [Zea mays]
          Length = 726

 Score =  573 bits (1476), Expect = e-161,   Method: Composition-based stats.
 Identities = 239/670 (35%), Positives = 371/670 (55%), Gaps = 25/670 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86
                S A   +  S  Y A+++++LE L+ VR RPGMYIG T  + LHHL  E++DNA+
Sbjct: 70  ASTTASEAMHEKQVSAEYTAANVQVLEALDGVRTRPGMYIGSTGPRGLHHLVYEILDNAV 129

Query: 87  DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA--GGKFD 144
           DE  AG+A+ I+V L  +  ++V DNGRGIP + HP+   KS +E +LT +HA       
Sbjct: 130 DEAQAGHASKIDVVLHDDNSVSVTDNGRGIPTDMHPQ-TKKSCVETVLTLMHAGGKFGGS 188

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP---LSPLEKKEKVRN 201
            S Y +SGGLHGVG+SVVNALS+ L VTV R      Q +SRG P   L+      +  +
Sbjct: 189 KSGYSVSGGLHGVGLSVVNALSETLEVTVWRDGKEHRQSYSRGKPTTRLTSSTLTGETSS 248

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           ++GTRI F PD  IF     FD   +    +  A+L+  +    +      E+    ++ 
Sbjct: 249 RQGTRIRFWPDKDIFTTTIDFDFNTISSRIRELAFLNPELTIILT-----KEEGHTVQRN 303

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
           E+ + GGL  Y++    ++  +       + E  G     V    +    +  +  Y N+
Sbjct: 304 EYCYAGGLVEYVKWLNTDKKPLHDP-IAFRKELDGIT-VDVSLQWSSDSYSDTVLGYANS 361

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I T +GGTH  GL+ +LTR I   A+ ++    + I++  + +      I+SV +  PEF
Sbjct: 362 IRTIDGGTHIDGLKASLTRTINNLAKKSKTIKDKDITLSGEHVREGMTCIISVKVPSPEF 421

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREV 438
            GQTKT+L + + +R VE ++++    YL  +P     +L   +         +R +  V
Sbjct: 422 EGQTKTRLGNPEVRRIVEQSVQENLTEYLELHPDVLDSILSKSLNALKAALAAKRARELV 481

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
             K+ ++   LPGKLADC+      +E+FIVEGDSAGGSAKQ R+R  QA+LPLRGKILN
Sbjct: 482 RTKSVLKSSSLPGKLADCASANPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILN 541

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLT 557
           +       +  N++I +L+ ALG   + +  +++ LRY K++I+TDADVDGAHI +LLLT
Sbjct: 542 IERRDEAAMYKNEEIQNLILALGLGVKGEDFKKEALRYHKIVILTDADVDGAHIRTLLLT 601

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
           FF++    L ++  +++  PPL+++ +G  + Y +D+   ++I+  F  +      I RF
Sbjct: 602 FFFRYQRALFDEGCIYVGVPPLYKVERGKLAHYCYDDADLKEIVNTFPAN--ASYHIQRF 659

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           KGLGEM+ +QL ET MD  +R L ++ +        +     + LMGT+ + R + IQ+ 
Sbjct: 660 KGLGEMMPAQLWETTMDPERRLLKQLRVED----AAEANVVFSSLMGTRVEYRKELIQKA 715

Query: 678 AS--FIDDVG 685
           AS   ID + 
Sbjct: 716 ASMINIDQLD 725


>gi|331090927|ref|ZP_08339769.1| hypothetical protein HMPREF9477_00412 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405149|gb|EGG84685.1| hypothetical protein HMPREF9477_00412 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 640

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 243/659 (36%), Positives = 347/659 (52%), Gaps = 33/659 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  + YDA SI ILEGLE VR+RPGMYIG    K L+HL  E++DNA+DE +AG+ N IE
Sbjct: 2   AKKNTYDADSISILEGLEAVRVRPGMYIGSVSTKGLNHLVYEIVDNAVDEHLAGFCNRIE 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+L+ +G  TV DNGRG+PV  H K    S   I+ TTLHAGGKFD+S Y+ SGGLHGVG
Sbjct: 62  VTLEKDGSATVSDNGRGVPVGMHQK--GVSAARIVYTTLHAGGKFDDSAYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK----KEKVRNKRGTRITFRPDPK 214
            SVVNALS  + V ++R   +    + RGIP   L            K GT + F PD  
Sbjct: 120 SSVVNALSAYMDVKISRDGAVHHDHYERGIPTIELVDGLLPVIAKTKKTGTTVNFLPDDT 179

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     F A  +       AYL+  +   +   +    +        ++ P G+  ++ 
Sbjct: 180 IFEK-TRFKAEEIKSRLHETAYLNPTLTIVFEDKRGAETERIE-----YHEPNGILGFIA 233

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESG 333
              + +  +       K E  G     VE A  +  E +  +  +CN I   EGGTH +G
Sbjct: 234 DLNQKKETVHEP-VYFKGEADGI---EVEVAFQYVNEFHENVLGFCNNIYNAEGGTHLTG 289

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            +   T  + +YA       ++  +    D+      I+S+   +P F GQTKTKL + D
Sbjct: 290 FKSTFTMVMNQYAREIGVLKEKDANFTGADIRNGMTAIVSIKHPDPRFEGQTKTKLDNQD 349

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           A +       D    +  +N     K+L    + ++ R    K +              G
Sbjct: 350 AGKATSKVTNDEITRFFDKNLDTLKKVLSCAEKAAKIRKTEEKAKTNLLTKQKYSFDSNG 409

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLA+C    A   E+FIVEGDSAGGSAK ARNR  QA+LP+RGKILNV  A  +K+  N 
Sbjct: 410 KLANCESRDASKCEIFIVEGDSAGGSAKTARNRQFQAILPIRGKILNVEKASIDKVLANA 469

Query: 512 QIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
           +I  ++ A GC       + +    LRY+K+IIM DADVDGAHI++LLLT FY+ M +LI
Sbjct: 470 EINSMINAFGCGFSEGYGNDFDISKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELI 529

Query: 568 EQKHLFLISPPLFR-ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            + H+++  PPL++ +T+  +  Y +D+    K LE++++  KG   + R+KGLGEM A 
Sbjct: 530 FEGHVYIAMPPLYKAVTKKGEEEYLYDD----KALEKYRRRQKGAYTLQRYKGLGEMDAE 585

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           QL +T ++   R L  +EI     +   T+     LMGT+   R  FI E A+  + + 
Sbjct: 586 QLWDTTLNPETRMLKLIEIEDARMASGVTE----MLMGTEVPPRRAFIYENATEAE-LD 639


>gi|161507592|ref|YP_001577546.1| DNA topoisomerase IV subunit B [Lactobacillus helveticus DPC 4571]
 gi|160348581|gb|ABX27255.1| DNA topoisomerase IV subunit B [Lactobacillus helveticus DPC 4571]
          Length = 653

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 241/654 (36%), Positives = 360/654 (55%), Gaps = 33/654 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ YD SSI+IL GLE VR RPGMYIG TD   L+ L  E++DN++DE +AG+   I+
Sbjct: 7   AKANTYDDSSIQILHGLEAVRKRPGMYIGSTDIHGLNQLVYEIVDNSVDEAMAGFGKEID 66

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +  +T+ D GRG+P   H     K T+E+ILT LHAGGKF    Y+ SGGLHGVG
Sbjct: 67  VTIHKDNSVTIRDFGRGMPTGMHK--SGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVG 124

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
            SVVNALS  + V V R    + ++F +G  P+  L+   K ++  GT ITF+PD  IF 
Sbjct: 125 SSVVNALSSYMKVRVVRDGKAYEEEFEKGGHPIGTLKCLGKTKDPTGTTITFKPDAMIFS 184

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               +    + +  +  A+L   VK   + +++          + F +  G+K+++    
Sbjct: 185 TT-KYKYETIQERIRESAFLLKGVKFVLTDERDPE------HHDVFQYDDGIKSFVSYLN 237

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRV 336
           E +    S++F  + ++ G     +E++  + +   E   S+ N + T +GGTHESG R 
Sbjct: 238 EGK-GTISDVFYFEGKQDG---MEIEFSGQYSDGYSENLVSFVNNVRTGDGGTHESGARS 293

Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392
             TR    YA+      K+  +I   D       +LSV I E   EF GQTK KL +  A
Sbjct: 294 GFTRAFNDYAKKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQA 353

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLP 450
           +  V++ + +   +YL++N   A +L++      + R   +K R+ +R      +K  L 
Sbjct: 354 RSAVDSLVYEKMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLS 413

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + I  N
Sbjct: 414 GKLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKN 473

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    +++  +D  Y+KVIIMTDAD DGAHI  LLLTFFY+ M  +IE+ 
Sbjct: 474 EEINTMIYTIGAGVGAEFNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEKG 533

Query: 571 HLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +++  PPL+R+ +G     +  YA  +E     L E +K  K    + RFKGLGEM A 
Sbjct: 534 KIYIALPPLYRLQKGRGKKAQIQYAWTDEE----LAEDEKAMKRGYSLQRFKGLGEMNAE 589

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL +T M+   R L+RV+I+         +  +  LMG K   R K+I++   F
Sbjct: 590 QLWQTTMNPESRMLIRVKIDD----AALAERRVTTLMGDKVAARRKWIEKNVKF 639


>gi|325661698|ref|ZP_08150321.1| hypothetical protein HMPREF0490_01056 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331084709|ref|ZP_08333797.1| hypothetical protein HMPREF0987_00100 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325471951|gb|EGC75166.1| hypothetical protein HMPREF0490_01056 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330410803|gb|EGG90225.1| hypothetical protein HMPREF0987_00100 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 640

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 242/659 (36%), Positives = 349/659 (52%), Gaps = 33/659 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  + YDA SI +LEGLE VR RPGMYIG    K L+HL  E++DNA+DE +AG+ N I 
Sbjct: 2   AKKNTYDADSISVLEGLEAVRKRPGMYIGSVSTKGLNHLIYEIVDNAVDEHLAGFCNKIS 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V L+ +G  TV DNGRG+PV  H K    S   ++ TTLHAGGKFD+S Y+ SGGLHGVG
Sbjct: 62  VFLEKDGSATVEDNGRGVPVGMHQK--GISAARLVYTTLHAGGKFDDSAYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK----KEKVRNKRGTRITFRPDPK 214
            SVVNALS+ + V ++R   +   ++ RGIP+  LE           K GT + F PD +
Sbjct: 120 SSVVNALSEYMDVKISRDGGVHHDRYERGIPVVELEDGLLPVIAKTRKTGTLVNFLPDGE 179

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     F A  +       AYL+  +   +   +    ++       F+ P G+  +++
Sbjct: 180 IFEK-TKFKADEVKSRLHETAYLNPELTIIFEDRRREQTEHIE-----FHEPDGIIGFIK 233

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESG 333
              + + +I       K E +G     VE A  +  E +  +  +CN I   EGGTH +G
Sbjct: 234 DMNQKKEVIHEP-VYFKGEAEGI---EVEVAFQYVNEFHENVLGFCNNIYNAEGGTHLTG 289

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            +   T  I +YA       ++  +    D+      I+SV   +P F GQTKTKL + D
Sbjct: 290 FKTTFTTVINQYARELGILKEKDSNFTGADIRNGMTAIVSVKHPDPRFEGQTKTKLDNPD 349

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           A +       +    Y  +N     K++    + ++ R    + +              G
Sbjct: 350 ASKATGKVTGEEIVRYFDRNLETLKKVIGCAEKAAKIRKTEERAKTNLLTKQKYSFDSNG 409

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLA+C    A   E+FIVEGDSAGGSAK AR+R  QA+LP+RGKILNV  A  +K+  N 
Sbjct: 410 KLANCESRDASKCEIFIVEGDSAGGSAKTARDRMYQAILPIRGKILNVEKASIDKVLANA 469

Query: 512 QIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
           +I  ++ A GC       + +    LRY+K+IIM DADVDGAHI++LLLT FY+ M +LI
Sbjct: 470 EIKTMINAFGCGFSEGYGNDFDISKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELI 529

Query: 568 EQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            + H+++  PPL++   +  +  Y +D+    K LE+++K   G   + R+KGLGEM A 
Sbjct: 530 FEGHVYIAMPPLYKAMPKKGEEEYLYDD----KALEQYRKRQTGPFTLQRYKGLGEMDAE 585

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           QL ET ++   R L  VEI     +   T+     LMG+    R  FI E A+  + + 
Sbjct: 586 QLWETTLNPETRMLKLVEIEDARMASSVTE----MLMGSDVPPRRAFIYENAAEAE-LD 639


>gi|229818508|ref|YP_002880034.1| DNA gyrase, B subunit [Beutenbergia cavernae DSM 12333]
 gi|229564421|gb|ACQ78272.1| DNA gyrase, B subunit [Beutenbergia cavernae DSM 12333]
          Length = 685

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 251/690 (36%), Positives = 370/690 (53%), Gaps = 35/690 (5%)

Query: 24  KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVID 83
             + E  +        ++  YDAS+I +LEGLE VR RPGMYIG T E+ LHHL SEV+D
Sbjct: 2   ADTHETVEDTIDTTNGSASGYDASNITVLEGLEAVRKRPGMYIGSTGERGLHHLVSEVVD 61

Query: 84  NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143
           N++DE +AGYA  I+V+L  +G + VVD+GRGIPV+   +   K  +E++LT LHAGGKF
Sbjct: 62  NSVDEALAGYATRIDVTLTEDGGVRVVDDGRGIPVDIV-ESEGKPAVEVVLTVLHAGGKF 120

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
               Y +SGGLHGVG+SVVNALS  L V V  Q +++ Q ++ G+P +PLE+  +  +  
Sbjct: 121 GGGGYAVSGGLHGVGVSVVNALSHRLEVEVRVQGSVWRQSYTDGVPDAPLER-GEATDVT 179

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE- 262
           GT +TF P+  IF     FD   L    Q  A+L+  ++   + ++  +        E  
Sbjct: 180 GTTVTFWPNGDIFETTV-FDFETLRGRFQQYAFLNKGLEISLTDERRESGTGDEVAGEHA 238

Query: 263 ------------------FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR-GTVE 303
                             + +  GL  Y++     +            E +   R  ++E
Sbjct: 239 DEETSVQLRDESHERTVTYRYDDGLVDYVRHINAAKRADLVHPEIIDFEAEDVERTISLE 298

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISD 360
            A+ W       + +Y NTI T EGGTHE G R ALT  + +YA       ++  ++  +
Sbjct: 299 IAMQWTSAYSESVHTYANTINTSEGGTHEEGFRAALTTLVNRYAREKNLLKEKDDNLTGE 358

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D+      +LS+ + EP+F GQTKTKL + +A+   +  + D    +L  +P EA +++ 
Sbjct: 359 DVREGLTAVLSIKLGEPQFEGQTKTKLGNTEARTFTQKVVFDQLGDWLASHPNEAREIVR 418

Query: 421 WVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
             I+ S  R+  RK RE  R+   +  + +PGKL DCS   A  +E+FIVEGDSAGGSA 
Sbjct: 419 KAIQASAARMAARKAREATRRKGLLEGVGMPGKLKDCSSRDASVSEVFIVEGDSAGGSAV 478

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
           Q RN   QA+LP+RGKILNV  A  +K   NQ++  L+ A G      +    LRY K++
Sbjct: 479 QGRNPETQAILPIRGKILNVEKARLDKALGNQEVQALITAFGTGIGEDFDLSKLRYHKIV 538

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQ 598
           +M DADVDG HI +LLLT  ++ M  L+E  H++L  PPL+++        Y + +  + 
Sbjct: 539 LMADADVDGQHICTLLLTLLFRYMRPLVEHGHVYLAMPPLYKLKWTNGPHDYVYSDRERD 598

Query: 599 KILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
            +LE  +  G+   +   I R+KGLGEM   +L ET MD + RTL +V I +        
Sbjct: 599 ALLEAGRAAGRRLPKDGGIQRYKGLGEMDYRELWETTMDPDTRTLKQVTIGE----AAMA 654

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
            +    LMG   + R  FIQ  A  +  + 
Sbjct: 655 DEIFAVLMGEDVESRRSFIQRNARDVRFLD 684


>gi|297205989|ref|ZP_06923384.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
           jensenii JV-V16]
 gi|297149115|gb|EFH29413.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
           jensenii JV-V16]
          Length = 652

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 232/658 (35%), Positives = 352/658 (53%), Gaps = 33/658 (5%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
             +   +++YD SSI+IL GLE VR RPGMYIG TD K ++ L  E++DN++DE +AGY 
Sbjct: 3   GNSLVKANSYDDSSIQILHGLEAVRKRPGMYIGSTDIKGINQLVYEIVDNSVDEAMAGYG 62

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             I V++  +  +TV D GRG+P   H       T+E+I T LHAGGKF    Y+ SGGL
Sbjct: 63  KEINVTIHEDNSITVQDFGRGMPTGMHE--SGIPTIEVIFTVLHAGGKFTEKNYKTSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDP 213
           HGVG SVVNALS  L V V R    + ++F   G P+  L+   K  +K GT ITF+PD 
Sbjct: 121 HGVGSSVVNALSSYLKVRVVRGGQAYEEEFHDGGKPIGSLKHLGKTNDKTGTTITFKPD- 179

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +       +    + +  +  A+L   VK     ++           EEF +  G+K+++
Sbjct: 180 ERVFSTTKYKYETIEERIRESAFLLKGVKFTLKDERTPN------HYEEFLYTDGIKSFV 233

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHES 332
               E +     ++F  + ++       +E++  + +   E   S+ N + T +GG+HE 
Sbjct: 234 SYLNEGKDTFG-DVFYFEGKQDSI---EIEFSGQYNDGYSENFVSFVNNVRTIDGGSHEM 289

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLV 388
           G R   TR    YA+      ++  +I   D       +LS+ + E   EF GQTK KL 
Sbjct: 290 GARSGFTRAFNDYAKKQGLLKEKEKNIEGSDYREGLSAVLSIKVPEELLEFEGQTKGKLG 349

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RK 446
           +  A+  V+  + +   +YL++N   A  L++   +  + R   +K R+ +R      +K
Sbjct: 350 TPQARSAVDALVYEKMSYYLLENGEFAQTLVKKAQKARDAREAAKKARDESRNGKKRRKK 409

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             L GKL           ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + 
Sbjct: 410 ELLSGKLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQD 469

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           I  N++I  ++  +G    ++++ +D  Y+K+IIMTDAD DGAHI  LLLTFFY+ M  +
Sbjct: 470 IFKNEEINTMIHTIGAGVGTEFKIDDANYDKIIIMTDADDDGAHIQILLLTFFYRYMRPM 529

Query: 567 IEQKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
           +E   +++  PPL+R+ +G     K  YA  +E  ++  +   K       + RFKGLGE
Sbjct: 530 VEAGRVYIALPPLYRLQKGNGAKAKIEYAWTDEELERDEKAMGK----GYSLQRFKGLGE 585

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           M A QL +T M+   R L+RV+I+         +  +  LMG K + R K+I++   F
Sbjct: 586 MNADQLWQTTMNPESRMLIRVKIDD----AALAERRVTTLMGDKVEARRKWIEQNVKF 639


>gi|28569044|gb|AAO47225.1|AF205853_1 DNA gyrase subunit B [Streptomyces rishiriensis]
          Length = 677

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 239/679 (35%), Positives = 363/679 (53%), Gaps = 23/679 (3%)

Query: 23  LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82
             ++              + +YDA++I +L+GL+ VR RPGMYIG T E+ LHHL  E++
Sbjct: 5   DTRTATDTRGSEQPGHVGTASYDANAITVLDGLDAVRKRPGMYIGSTGERGLHHLVQELV 64

Query: 83  DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142
           DN++DE +AG A+ I+V++  +G + VVDNGRGIPV  HP    +  +E++LT LHAGGK
Sbjct: 65  DNSVDEALAGVADRIDVTVLADGGVRVVDNGRGIPVGMHP-VEKRPAVEVVLTVLHAGGK 123

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           F    Y +SGGLHGVG+SVVNALS  L   +      ++Q +  G P +PL + E     
Sbjct: 124 FGGGGYAVSGGLHGVGLSVVNALSTRLSAEIWTDGHRWTQDYRDGAPTAPLARHEATSR- 182

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------EIAE 253
            GT +TF  D  IF     +    L +  Q  A+L+G +    + ++         + A+
Sbjct: 183 TGTSLTFWADGDIFET-TEYSFETLARRHQEMAFLNGGLTLTLTDERSSARATAAVDEAD 241

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP 313
                +   + + GG+  ++      ++  +         +      + E A+ W  +  
Sbjct: 242 SDPTAKTVSYRYDGGITDFVVHLNARKAEPAHPSVITIAAEDTERLLSAEIALQWNGQYT 301

Query: 314 E-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGIL 370
           + + SY N I T EGGTHE G R ALT  + +YA   +    +  ++  +D+      I+
Sbjct: 302 DSVYSYANAIHTHEGGTHEEGFRTALTTVVNRYAREKRLLRDKDANLSGEDIREGLTAII 361

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV + EP+F GQTKTKL + + +  V+  + +    +  +NP EA  ++   ++ +  R+
Sbjct: 362 SVKLGEPQFEGQTKTKLGNTEVRTFVQKIVHEHLADWFDRNPNEAVDIVRKAVQAATARV 421

Query: 431 RRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK R++ R+   +    LPGKL+DC  N    +E+FIVEGDSAGGSAK  RN   QA+
Sbjct: 422 AARKARDLTRRKGLLETAALPGKLSDCQSNDPATSEIFIVEGDSAGGSAKAGRNPQYQAI 481

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549
           LP+RGKILNV  A  +K+  NQ+I  L+ A G      +    LRY K+I+M DADVDG 
Sbjct: 482 LPIRGKILNVEKARIDKVLQNQEIQALISAFGTGVHEDFDIAKLRYHKIILMADADVDGQ 541

Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTK-SVYAHDEEHKQKILE--EFKK 606
           HI++LLLTF ++ M  L+E+ H+ L  PPL++I    +   YA+ +  +  +LE      
Sbjct: 542 HISTLLLTFLFRFMRPLVEEGHVHLSRPPLYKIKWSREHVEYAYSDRERNTLLERGRRDG 601

Query: 607 HGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK 666
                  I RFKGLGEM A +L+ T MD + R L +V ++          D  + LMG  
Sbjct: 602 RRIRDDSIQRFKGLGEMNAEELRVTTMDPDHRVLGQVTLDD----AAFADDLFSVLMGED 657

Query: 667 ADERFKFIQERASFIDDVG 685
            + R  FIQ  A  +  + 
Sbjct: 658 VEARRHFIQRNAQDVRFLD 676


>gi|78707349|gb|ABB46480.1| DNA gyrase subunit B [Acholeplasma granularum]
 gi|78707351|gb|ABB46481.1| DNA gyrase subunit B [Acholeplasma granularum]
 gi|78707353|gb|ABB46482.1| DNA gyrase subunit B [Acholeplasma granularum]
          Length = 587

 Score =  572 bits (1474), Expect = e-161,   Method: Composition-based stats.
 Identities = 238/605 (39%), Positives = 355/605 (58%), Gaps = 20/605 (3%)

Query: 58  VRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIP 117
           V+ RPGMYIG T E+ LHHL  E++DN++DE +AGYA+ I + +     + V DNGRGIP
Sbjct: 1   VKKRPGMYIGSTGERGLHHLVWEIVDNSIDEALAGYADEINIEILKGNIVRVTDNGRGIP 60

Query: 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN 177
           V+ HPK   +  +E ILTTLHAGGKFD  +Y++SGGLHGVG SVVN LS+   V + +  
Sbjct: 61  VDIHPK-TGRPAVETILTTLHAGGKFDKGSYKVSGGLHGVGASVVNGLSEYFIVEIHKDG 119

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
           TI+ Q++ RGIP   L+         GT ITF  DPKIF +   ++   L    Q  A+L
Sbjct: 120 TIYEQRYERGIPAYDLKTIGTTEK-SGTVITFLADPKIFTETTVYNLETLKNRIQQLAFL 178

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +K   +  +        P  E F++ GG+  Y++   +++S I  +I     E+ G 
Sbjct: 179 NKGLKLHLTDSR-----PDEPIAESFHYEGGIVEYVKFLNQSKSKIHPDIIYIDKEQDGI 233

Query: 298 HRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
              TVE A+ + +        + N I T EGG HE G ++ALTR I KYA+  + K+  S
Sbjct: 234 ---TVELALQFVDSYSPNLHSFTNNISTTEGGMHEDGFKMALTRVISKYADDLKMKKDDS 290

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           I  +D       I+SV   EP+F GQTKTKL + + +        +  + +L++NP +A 
Sbjct: 291 ISGEDTREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAITSQITSEAIERFLLENPQQAK 350

Query: 417 KLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            ++E ++  +  R+  RK +E   RK+ +  L    KLADC       +E++IVEGDSAG
Sbjct: 351 MIVEKILLATRARVAARKAKELTRRKSPLDALGFASKLADCRSKDPEKSEIYIVEGDSAG 410

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           GSAKQ R+   QA++PLRGK+LNV  A  +K+ +N++I++L+QA+G     ++     RY
Sbjct: 411 GSAKQGRDSEFQAIMPLRGKVLNVEKARLDKMLSNKEIVNLIQAMGTGIADEFDITKARY 470

Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEE 595
            K++IMTDADVDGAHI +LLLTF ++ M  LI+  +++   PPL++++ G    YA+ +E
Sbjct: 471 HKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYKVSWGRNEKYAYTDE 530

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
              +I+   +     K  I R+KGLGEM A QL +T MD  KRTLL++++   +    + 
Sbjct: 531 ELNEIVSGIE----TKPSIQRYKGLGEMNAEQLWDTTMDPAKRTLLQIKLEDAI----EA 582

Query: 656 QDSIN 660
               +
Sbjct: 583 DQVFS 587


>gi|320528087|ref|ZP_08029252.1| DNA topoisomerase IV, B subunit [Solobacterium moorei F0204]
 gi|320131435|gb|EFW24000.1| DNA topoisomerase IV, B subunit [Solobacterium moorei F0204]
          Length = 639

 Score =  572 bits (1474), Expect = e-161,   Method: Composition-based stats.
 Identities = 239/649 (36%), Positives = 362/649 (55%), Gaps = 30/649 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ YD +SI+ILEGLE VR RPGMYIG TD + LHHL  E++DN++DE + GY   I+++
Sbjct: 2   ANRYDDNSIQILEGLEAVRKRPGMYIGSTDTRGLHHLIWEIVDNSIDEALNGYGKKIQIT 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN-STYEISGGLHGVGI 159
           L+ +G +TV D GRG+P+  H      +TL++I T LHAGGKF +   Y+ +GGLHGVG 
Sbjct: 62  LEADGSVTVQDEGRGMPIGQH--ASGVNTLQVIFTVLHAGGKFSSEGGYKTAGGLHGVGA 119

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+ L V VA    +   +F+ G       +     N+ G+ + F+PDP+IF   
Sbjct: 120 SVVNALSEWLIVEVAHDGELVRMEFAAGGKKIGKLEHLGKTNRTGSTVRFKPDPRIFSTT 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             +    + +  + +A+L   +    S  +         E E + +  GL  +L    E+
Sbjct: 180 -EYKYDVVCERAREEAFLLSGIAMVVSDKR-----NKKNETETYLYEDGLTAFLGYLHED 233

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           R+++ + +     E  G     VE A  + ++      S+ N + T +GGTHE+G + A 
Sbjct: 234 RNVLMNPVK-FSGEASGIQ---VEAAFQYTDDYQENTYSFVNLVRTGDGGTHEAGFKGAF 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE--PEFAGQTKTKLVSLDAQR 394
           T+ I  YA        +  ++   D+      ILSV + E   +F GQTK+KL +  A+ 
Sbjct: 290 TKAINDYARKYGLLKAKDKNLEGGDVREGLTTILSVSVPEGLLQFEGQTKSKLGTPQAKT 349

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPG 451
            VE  + +    +L +N  ++  L+  +++ S  R+  RK R+  RK          L G
Sbjct: 350 AVEAVVSEKLSFWLEENRNQSDTLVRKMLKASLARIAARKARDEIRKGKRVGKGEKVLSG 409

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLA      A   ELF+VEGDSAGGSAKQ R+   QA+LPLRGK+LN        I  N+
Sbjct: 410 KLAPAQTKDARVKELFLVEGDSAGGSAKQGRDSHYQAILPLRGKVLNTEKCTLSDIEKNE 469

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++  L+  LG      +  ++  Y KVIIMTDAD DG+HI  LLLTFFY+ M  L+EQ  
Sbjct: 470 ELNTLIYTLGAGVGPDFDYKESNYGKVIIMTDADDDGSHIQILLLTFFYRYMRPLLEQGM 529

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPL+++T+G  + Y + ++    +  +      GK+EI R+KGLGEM A+QL ET
Sbjct: 530 IYIALPPLYKVTKGKTTEYVYSDQELDALRRKL-----GKVEIQRYKGLGEMNATQLWET 584

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            MD ++RTL++V I+  +      +  +  LMG KA+ R K+I++  SF
Sbjct: 585 TMDPSQRTLIKVGISDGVK----AERRVTVLMGDKAELRRKWIEDNVSF 629


>gi|227506183|ref|ZP_03936232.1| DNA gyrase subunit B [Corynebacterium striatum ATCC 6940]
 gi|227197207|gb|EEI77255.1| DNA gyrase subunit B [Corynebacterium striatum ATCC 6940]
          Length = 684

 Score =  572 bits (1474), Expect = e-161,   Method: Composition-based stats.
 Identities = 251/692 (36%), Positives = 372/692 (53%), Gaps = 59/692 (8%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
              YDA SI ILEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AGYA  + V 
Sbjct: 4   EHAYDAGSITILEGLEAVRKRPGMYIGSTGVRGLHHLIWEVVDNSVDEAMAGYATKVVVK 63

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +G + V+D+GRGIPVE H       T+++++T LHAGGKFD+ +Y +SGGLHGVGIS
Sbjct: 64  LLADGGVEVIDDGRGIPVEMH--ATGAPTVQVVMTQLHAGGKFDSDSYAVSGGLHGVGIS 121

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  +   + R    + Q FS  IP   +E         GT I F  DP+IF    
Sbjct: 122 VVNALSTRVEAEIKRDGKHWYQNFSNAIPDELVE--GGNARGTGTTIRFWADPEIFETT- 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-------------------------- 254
            +D   + +  Q  A+L+  +      ++   E+                          
Sbjct: 179 EYDYQTIARRLQEMAFLNKGLTIELIDERVTKEQLELEAIADAESGETALEAESFDDIDV 238

Query: 255 -------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
                          + +K  +++P GL  Y++   + ++ I   I     + +      
Sbjct: 239 DAEADGPSEEKPAKKLQKKVVYHYPDGLIDYVKHLNKTKTSIHPTIVAFDVKGEDH---E 295

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISII 358
           VE A+ W +     + ++ NTI T EGGTHE G R ALT  + +YA+  +   ++  ++ 
Sbjct: 296 VEVALQWNQGYKESVHTFANTINTHEGGTHEEGFRAALTSLMNRYAKEHKLIKEKDGNLS 355

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            +D       ++SV + +P+F GQTKTKL + + +  V+ A+ +  + +   NP EA  +
Sbjct: 356 GEDCREGLSAVISVKVGDPQFEGQTKTKLGNSEIKGFVQRAVNEHVNDWFDANPAEAKAI 415

Query: 419 LEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           +   +  +  R+  RK RE+  RK+A     LPGKLADC       +EL+IVEGDSAGGS
Sbjct: 416 INKAVSSAHARVAARKAREMVRRKSATDLGGLPGKLADCRSKDPKISELYIVEGDSAGGS 475

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  R+   QA+LPLRGKILNV  A  +K+  N ++  ++ ALG     ++  E LRY K
Sbjct: 476 AKAGRDSMFQAILPLRGKILNVEKARMDKVLKNAEVQAIITALGTGIHEEFDIEKLRYNK 535

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEH 596
           +++M DADVDG HIA+LLLT  ++ M  L+E  H++L +PPL+++  G  +  YA  ++ 
Sbjct: 536 IVLMADADVDGQHIATLLLTLLFRFMPQLVEDGHVYLANPPLYKLKWGKGEPGYAFSDDE 595

Query: 597 KQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
           + K+L E  ++ +   +   I R+KGLGEM AS+L ET +D + R L RV    DL   +
Sbjct: 596 RDKLLAEGLENNRKINKDDGIQRYKGLGEMNASELWETTLDPSTRILRRV----DLEDAQ 651

Query: 654 DTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              +  + LMG     R  FI  RA  +  + 
Sbjct: 652 RADELFSILMGDDVSARRSFITRRAKDVRFLD 683


>gi|153814924|ref|ZP_01967592.1| hypothetical protein RUMTOR_01139 [Ruminococcus torques ATCC 27756]
 gi|317500436|ref|ZP_07958660.1| DNA gyrase, subunit B [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089557|ref|ZP_08338456.1| hypothetical protein HMPREF1025_02039 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847955|gb|EDK24873.1| hypothetical protein RUMTOR_01139 [Ruminococcus torques ATCC 27756]
 gi|316898191|gb|EFV20238.1| DNA gyrase, subunit B [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330404925|gb|EGG84463.1| hypothetical protein HMPREF1025_02039 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 640

 Score =  572 bits (1474), Expect = e-161,   Method: Composition-based stats.
 Identities = 243/660 (36%), Positives = 352/660 (53%), Gaps = 35/660 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ YDA SI +LEGLE VR RPGMYIG    K L+HL  E++DN++DE +AG+   I 
Sbjct: 2   AGNNTYDAGSISVLEGLEAVRKRPGMYIGSVSTKGLNHLIYEIVDNSVDEHLAGFCTEIR 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V L+ +G  TV DNGRGIPV+ H K    S   ++ TTLHAGGKFD+S Y+ SGGLHGVG
Sbjct: 62  VVLEKDGTATVTDNGRGIPVDMHQK--GISAARLVFTTLHAGGKFDDSAYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGTRITFRPDP 213
            SVVNALS  + V ++R   ++  ++ RG+P+  LE     K  K +   GT I F PD 
Sbjct: 120 SSVVNALSTYMDVKISRDGAVYHDRYERGVPVIELENGLLPKIGKTKK-TGTTINFLPDD 178

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF     F A  +       AYL+  +   +   +    ++       ++ P G+  ++
Sbjct: 179 TIFEK-TKFRAEEVKSRLHETAYLNPELTIIFEDKRGDQTEHIE-----YHEPEGIIGFI 232

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHES 332
           +   + +  +       K E  G     VE A  +  E +  +  +CN I   EGGTH +
Sbjct: 233 RDLNKKKEALHEP-VYFKGEADGI---EVEAAFQYVNEFHENVLGFCNNIYNAEGGTHLT 288

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G +   T  + +YA       ++  +    D+      I+S+   +P F GQTKTKL + 
Sbjct: 289 GFKTTFTTVMNQYAREIGILKEKDTNFTGADIRNGMTAIISIKHPDPRFEGQTKTKLDNP 348

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
           DA + V     D    Y  +N      +L    + ++ R    K +              
Sbjct: 349 DAAKAVGKVAGDEIVLYFDRNLDVLKTVLSSAEKAAKIRKTEEKAKTNLLTKQKYSFDSN 408

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLA+C        E+FIVEGDSAGGSAK ARNR+ QA+LP+RGKILNV  A  +K+  N
Sbjct: 409 GKLANCESRDPKKCEIFIVEGDSAGGSAKTARNRNFQAILPIRGKILNVEKASIDKVLAN 468

Query: 511 QQIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
            +I  ++ A GC       + +    LRY+K+IIM DADVDGAHI++LLLT FY+ M +L
Sbjct: 469 AEIKTMINAFGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPEL 528

Query: 567 IEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           I + H+++  PPL++   +  +  Y +D+    K LE++++  KG   + R+KGLGEM A
Sbjct: 529 IYEGHVYIAMPPLYKAMPKSGEEEYLYDD----KALEKYRRTHKGPFTLQRYKGLGEMDA 584

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL ET +D  +R L  VEI     +   T+     LMGT+   R  FI E A+  + + 
Sbjct: 585 EQLWETTLDPKRRLLKLVEIEDARMASGVTE----MLMGTEVPPRRAFIYENATEAE-LD 639


>gi|256851124|ref|ZP_05556513.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260660548|ref|ZP_05861463.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii 115-3-CHN]
 gi|282932237|ref|ZP_06337681.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii 208-1]
 gi|256616186|gb|EEU21374.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260548270|gb|EEX24245.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii 115-3-CHN]
 gi|281303632|gb|EFA95790.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii 208-1]
          Length = 647

 Score =  572 bits (1474), Expect = e-161,   Method: Composition-based stats.
 Identities = 232/653 (35%), Positives = 351/653 (53%), Gaps = 33/653 (5%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
            +++YD SSI+IL GLE VR RPGMYIG TD K ++ L  E++DN++DE +AGY   I V
Sbjct: 3   KANSYDDSSIQILHGLEAVRKRPGMYIGSTDIKGINQLVYEIVDNSVDEAMAGYGKEINV 62

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  +TV D GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG 
Sbjct: 63  TIHEDNSITVQDFGRGMPTGMHE--SGIPTIEVIFTVLHAGGKFTEKNYKTSGGLHGVGS 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           SVVNALS  L V V R    + ++F   G P+  L+   K  +K GT ITF+PD +    
Sbjct: 121 SVVNALSSYLKVRVVRGGQAYEEEFHDGGKPIGSLKHLGKTNDKTGTTITFKPD-ERVFS 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              +    + +  +  A+L   VK     ++           EEF +  G+K+++    E
Sbjct: 180 TTKYKYETIEERIRESAFLLKGVKFTLKDERTPN------HYEEFLYTDGIKSFVSYLNE 233

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVA 337
            +     ++F  + ++       +E++  + +   E   S+ N + T +GG+HE G R  
Sbjct: 234 GKDTFG-DVFYFEGKQDSI---EIEFSGQYNDGYSENFVSFVNNVRTIDGGSHEMGARSG 289

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
            TR    YA+      ++  +I   D       +LS+ + E   EF GQTK KL +  A+
Sbjct: 290 FTRAFNDYAKKQGLLKEKEKNIEGSDYREGLSAVLSIKVPEELLEFEGQTKGKLGTPQAR 349

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLPG 451
             V+  + +   +YL++N   A  L++   +  + R   +K R+ +R      +K  L G
Sbjct: 350 SAVDALVYEKMSYYLLENGEFAQTLVKKAQKARDAREAAKKARDESRNGKKRRKKELLSG 409

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + I  N+
Sbjct: 410 KLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIFKNE 469

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    ++++ +D  Y+K+IIMTDAD DGAHI  LLLTFFY+ M  ++E   
Sbjct: 470 EINTMIHTIGAGVGTEFKIDDANYDKIIIMTDADDDGAHIQILLLTFFYRYMRPMVEAGR 529

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+R+ +G     K  YA  +E  ++  +   K       + RFKGLGEM A Q
Sbjct: 530 VYIALPPLYRLQKGNGAKAKIEYAWTDEELERDEKAMGK----GYSLQRFKGLGEMNADQ 585

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L +T M+   R L+RV+I+         +  +  LMG K + R K+I++   F
Sbjct: 586 LWQTTMNPESRMLIRVKIDD----AALAERRVTTLMGDKVEARRKWIEQNVKF 634


>gi|15604098|ref|NP_220613.1| DNA topoisomerase IV subunit B [Rickettsia prowazekii str. Madrid
           E]
 gi|81554898|sp|Q9ZDU7|PARE_RICPR RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|3860790|emb|CAA14690.1| DNA GYRASE SUBUNIT B (gyrB1) [Rickettsia prowazekii]
 gi|292571824|gb|ADE29739.1| DNA topoisomerase IV, B subunit [Rickettsia prowazekii Rp22]
          Length = 662

 Score =  572 bits (1473), Expect = e-161,   Method: Composition-based stats.
 Identities = 335/649 (51%), Positives = 446/649 (68%), Gaps = 9/649 (1%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +    N+    NY A  I +L+GLEPVR RPGMYIGGTD  A+HHL SEV+DNAMDE +A
Sbjct: 8   NKEKKNKIVYTNYSAKDIEVLDGLEPVRKRPGMYIGGTDSNAMHHLVSEVLDNAMDEAVA 67

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+A++I + +  +  +T+ DNGRGIP++NHPKFP+KS LE+ILTTLH+G KF N+ Y  S
Sbjct: 68  GFASIIMIKMHQDHSITIFDNGRGIPIDNHPKFPDKSALEVILTTLHSGSKFSNNVYHTS 127

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVGISVVNALS    + V +Q  ++SQ +S+G  L+ L   E  +  RGT I F P
Sbjct: 128 GGLHGVGISVVNALSKHFKIKVYKQGKLYSQSYSKGAKLTDLISAEASKRLRGTSINFTP 187

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           DP+IF +K  F+  ++ ++ +SKAYL   V   W C+ E+     IP+K    FP GLK 
Sbjct: 188 DPEIFSEKLHFNPKKIYEIARSKAYLYRGVSIEWECEVEVP--SDIPKKALINFPNGLKD 245

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP--EITSYCNTILTDEGGT 329
           YL +K+   +L+  EIF+G  E        +EWAI W   +    + SYCNT+ T +GGT
Sbjct: 246 YLSSKISLDNLVIPEIFSGNIES-TVDDIKLEWAICWQNNDTSAFMQSYCNTVPTPQGGT 304

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           HE GL+ A+ RG+K Y+E+  NK+A ++  +D++ +A  +LS+FI EP F GQTK KLVS
Sbjct: 305 HEQGLKSAILRGLKAYSEMIGNKKAANLTIEDILETASIVLSIFIVEPSFQGQTKEKLVS 364

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
               + VEN ++D FDH+L  + + AT LLE VI  +E R  ++ +R ++RK+  +KLRL
Sbjct: 365 NGVSKLVENIIKDHFDHFLSSDKVLATHLLEHVIAIAEFRRNKKNERNISRKSVTQKLRL 424

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC++  A GTELFIVEGDSAGGSAKQARNR  QAVLPL GK+LNVAS+  EKI N
Sbjct: 425 PGKLADCTRTSAEGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSTLEKIIN 484

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           NQ I DL  AL C +   Y++E+LRYEK+IIMTDADVDGAHIASLL+TFF+  M  L+E+
Sbjct: 485 NQAIQDLEIALACGSLKNYKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEE 544

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
            HL+L  PPL+R+TQ  K  YA DEE K K+  +  K  K KIE+ RFKGLGEM+ +QLK
Sbjct: 545 GHLYLAKPPLYRLTQSNKIYYACDEEEKIKLTYKLSKASKAKIEVGRFKGLGEMMPAQLK 604

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           ET M   KR+LL+V +      +++    ++ LMG K ++RF+FI E+A
Sbjct: 605 ETTMHPEKRSLLKVTLED----VQNVDKIVDDLMGKKPEKRFQFIYEQA 649


>gi|253580826|ref|ZP_04858089.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847896|gb|EES75863.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 664

 Score =  572 bits (1473), Expect = e-161,   Method: Composition-based stats.
 Identities = 244/663 (36%), Positives = 348/663 (52%), Gaps = 34/663 (5%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
            + +  + YDA SI +LEGLE VR RPGMYIG    K L+HL  E++DNA+DE +AGY +
Sbjct: 22  TDMAKKNTYDAGSISVLEGLEAVRKRPGMYIGSVSRKGLNHLIYEIVDNAVDEHLAGYCS 81

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
           LI V L+ +G  TV DNGRGIPV+ H K    S   ++ TTLHAGGKFDNS Y+ SGGLH
Sbjct: 82  LIHVILEKDGSCTVTDNGRGIPVDMHEK--GVSAERLVFTTLHAGGKFDNSAYKTSGGLH 139

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGTRITFR 210
           GVG SVVNALS  L + ++R   +    + RGIP   LE     K  K R + GT I F 
Sbjct: 140 GVGSSVVNALSTYLDIKISRDGYVHHDHYERGIPTIELEEGLLPKLGKTR-QTGTSINFL 198

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PDP+IF     F A  +       AYL+  +   +   +    +        ++ P G+ 
Sbjct: 199 PDPEIFEK-TRFSATEVKSRLHETAYLNPELTIRFEDKRGAEVEDIT-----YHEPDGII 252

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++    +  ++       K E  G     VE A  +  E    +  +CN I   EGGT
Sbjct: 253 GFIKDLNHSAEVLHDP-VYLKGEADGIQ---VEVAFQFTNEFRENVLGFCNNIYNAEGGT 308

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G +   T  +  YA        +  +    D+      ++S+   EP F GQTKTKL
Sbjct: 309 HLTGFKTTFTTVMNTYAREIGVLKDKDPNFTGADIRNGMTAVVSIKHPEPRFEGQTKTKL 368

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL 447
            + DA R     + +    Y  +N      +L    + ++ R    + +           
Sbjct: 369 DNQDASRATGKVVGEQMVLYFDRNLETLKTILSCAEKAAKIRKTEERAKTNLLTKQKYSF 428

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
              GKLA+C +      E+FIVEGDSAGGSAK ARNR+ QA+LP+RGKILNV  A  +K+
Sbjct: 429 DSNGKLANCEKKDPSQCEIFIVEGDSAGGSAKTARNRNYQAILPIRGKILNVEKATIDKV 488

Query: 508 RNNQQIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
             N +I  ++ A GC       + +    LRY+K++IM DADVDGAHI++LLLT FY+ M
Sbjct: 489 LANAEIKTMINAFGCGFSEGYGNDFDITKLRYDKIVIMADADVDGAHISTLLLTLFYRFM 548

Query: 564 YDLIEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
            DLI + H+++  PPL+++  +  +  Y +D++  ++     + H  G   + R+KGLGE
Sbjct: 549 PDLITEGHVYIAMPPLYKVMPKKGQEEYLYDDKALERYR---RAHKPGSFTLQRYKGLGE 605

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           M A QL ET ++   R + RVEI     +   T+     LMG+    R KFI E A   +
Sbjct: 606 MDAEQLWETTLNPETRMMKRVEIEDARLASSVTE----ILMGSDVPPRKKFIYEHAQDAE 661

Query: 683 DVG 685
            + 
Sbjct: 662 -LD 663


>gi|58337412|ref|YP_193997.1| DNA topoisomerase IV subunit B [Lactobacillus acidophilus NCFM]
 gi|227904045|ref|ZP_04021850.1| DNA topoisomerase IV subunit B [Lactobacillus acidophilus ATCC
           4796]
 gi|58254729|gb|AAV42966.1| DNA topoisomerase IV subunitB [Lactobacillus acidophilus NCFM]
 gi|227868064|gb|EEJ75485.1| DNA topoisomerase IV subunit B [Lactobacillus acidophilus ATCC
           4796]
          Length = 648

 Score =  572 bits (1473), Expect = e-161,   Method: Composition-based stats.
 Identities = 240/654 (36%), Positives = 355/654 (54%), Gaps = 33/654 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ YD SSI+IL GLE VR RPGMYIG TD   L+ L  E++DN++DE +AG+   I+
Sbjct: 2   AKANTYDDSSIQILHGLEAVRKRPGMYIGSTDIHGLNQLVYEIVDNSVDEAMAGFGKEID 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +  +T+ D GRG+P   H     K T+E+ILT LHAGGKF    Y+ SGGLHGVG
Sbjct: 62  VTIHKDNSITIRDFGRGMPTGMHK--SGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
            SVVNALS  + V V R    + ++F   G P+  L+   K  +  GT ITF+PD  +F 
Sbjct: 120 SSVVNALSSYMKVRVVRDGKAYEEEFQNGGHPVGTLKCLGKTSDPTGTTITFKPDDTVFS 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               +    + +  +  A+L   VK   + ++           + F +  G+K+++    
Sbjct: 180 T-TKYKYETIQERIRESAFLLKGVKFVLTDERTPE------HHDVFQYDDGIKSFVSYLN 232

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRV 336
           E +    S +F  + ++ G     +E++  + +   E   S+ N + T +GGTHESG R 
Sbjct: 233 EGK-GTISNVFYFEGKQDG---MEIEFSGQYSDGYSENLVSFVNNVRTGDGGTHESGARS 288

Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392
             TR    YA+      K+  +I   D       +LS+ I E   EF GQTK KL +  A
Sbjct: 289 GFTRAFNDYAKKQGLLGKKDKNIDGSDYREGLSAVLSIKIPEELLEFEGQTKGKLGTPQA 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLP 450
           +  V++ + +   +YL++N   A +L++      + R   +K R+ +R      +K  L 
Sbjct: 349 RSAVDSLVYEKMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLS 408

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + I  N
Sbjct: 409 GKLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKN 468

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    +++  +D  Y+KVIIMTDAD DGAHI  LLLTFFY+ M  +IEQ 
Sbjct: 469 EEINTMIYTIGAGVGTEFNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEQG 528

Query: 571 HLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +++  PPL+R+ +G     +  YA  +E     L E +K       + RFKGLGEM A 
Sbjct: 529 KVYIALPPLYRLQKGRGKNVEIQYAWTDEE----LAEDEKKMGRGYSLQRFKGLGEMNAE 584

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL +T M+   R L+RV+I+         +  +  LMG K   R K+I+E   F
Sbjct: 585 QLWQTTMNPESRMLIRVKIDD----AALAERRVTTLMGDKVAARRKWIEENVKF 634


>gi|291320111|ref|YP_003515369.1| topoisomerase IV subunit B [Mycoplasma agalactiae]
 gi|290752440|emb|CBH40411.1| Topoisomerase IV subunit B [Mycoplasma agalactiae]
          Length = 641

 Score =  572 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 243/651 (37%), Positives = 355/651 (54%), Gaps = 32/651 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           ++ NYDASSI+ L+GLE VR RPGMYIG TD   LHHL  E++DN++DE +AG AN I V
Sbjct: 5   SNSNYDASSIQQLKGLEAVRKRPGMYIGSTDVNGLHHLIWEIVDNSIDEALAGEANEIIV 64

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +G + V DNGRGIPV   P    KS +E++ T LHAGGKF+   Y+ SGGLHGVG 
Sbjct: 65  ILKKDGSVIVSDNGRGIPVGKTP--SGKSAVELVFTELHAGGKFNEGAYKTSGGLHGVGS 122

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L   V R   I+   F  G  +          NKRGT I F P+ +IF   
Sbjct: 123 SVVNALSNKLKCLVYRDKHIYETIFENGDNIVQKTHIIGSTNKRGTSIQFWPNYEIFKK- 181

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
           A F+   + +  +  ++L   +      +            EEF +  G+K +++   ++
Sbjct: 182 AKFNFETIAERLRESSFLISNLSIKLIDE-------QSERSEEFKYSNGIKAFVEFINDS 234

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVAL 338
           ++ + +        K+  +   +E    + +  N  I S+ N + T +GGTHE GL+ A+
Sbjct: 235 KTALFNVYSF----KQVVNEIEIECGFQYTDGFNETILSFVNNVKTRDGGTHEIGLKSAI 290

Query: 339 TRGIKKYAELTQNKRAIS-IISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395
           T+    +A   +  +  +    +D+      +LSV I E   EF  QTK KL + +A+  
Sbjct: 291 TKTFNDFALDEKVLKGKNTFDGEDVREGLTVVLSVKIPEKYLEFVSQTKDKLGTPEAKSA 350

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA---IRKLRLPGK 452
           VE A+      ++ +N   A K+L+ +   S+ R   RK R   RKT      K  L GK
Sbjct: 351 VEEAVSKNLKTWITENKQIAKKILDKIKRASDSRESARKARLEARKTKSALKEKQILSGK 410

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L           ELF+VEGDSAGGSAK  R+R  QA+LPLRGK++N   A    I  N++
Sbjct: 411 LTPAQTKNVKEKELFLVEGDSAGGSAKSGRDRRYQAILPLRGKVINTEKARLIDILKNEE 470

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++ A+G      +    ++Y+KVIIMTDAD DGAHI  LLLTFF++ M  LIE+  +
Sbjct: 471 INTIINAIGAGIGQDFDINKIQYDKVIIMTDADTDGAHIQILLLTFFFRHMRRLIEEGKV 530

Query: 573 FLISPPLFRITQ---GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           ++  PPLF++T      + +YA DE   +++L+   K+     E+ R+KGLGEM A QL 
Sbjct: 531 YIALPPLFKLTINKAKKEILYAWDENELKELLQTKMKNA----EVQRYKGLGEMNADQLW 586

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL++V I          +  ++ LMG   + R ++I +  +F
Sbjct: 587 ETTMNPETRTLIQVRIQD----AALAERRVSTLMGDNVESRKEWINKNVNF 633


>gi|224283956|ref|ZP_03647278.1| DNA gyrase subunit B [Bifidobacterium bifidum NCIMB 41171]
 gi|310286525|ref|YP_003937783.1| gyrB1 DNA gyrase subunit B [Bifidobacterium bifidum S17]
 gi|311063464|ref|YP_003970189.1| gyrB DNA gyrase subunit B [Bifidobacterium bifidum PRL2010]
 gi|309250461|gb|ADO52209.1| gyrB1 DNA gyrase subunit B [Bifidobacterium bifidum S17]
 gi|310865783|gb|ADP35152.1| gyrB DNA gyrase subunit B [Bifidobacterium bifidum PRL2010]
          Length = 720

 Score =  572 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 248/705 (35%), Positives = 368/705 (52%), Gaps = 29/705 (4%)

Query: 4   DSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPG 63
               L ++   Q     ++     E+ D+      S  D+YDAS +++LEGLE VR+RPG
Sbjct: 23  PGSGLTASSAEQHDREVDEAIAQDELDDAQLDDTLSP-DHYDASDLKVLEGLEAVRIRPG 81

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIG T  + LHHL  E++DN++DE +AGYA  IEV++  +  + VVD+GRGIPV+  P 
Sbjct: 82  MYIGSTGPRGLHHLVYEIVDNSVDEALAGYATHIEVTILPDNGIRVVDDGRGIPVDEVP- 140

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
               S +E ++T LHAGGKF    Y +SGGLHGVGISVVNALS  + + V RQ   ++Q 
Sbjct: 141 GEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHWTQT 200

Query: 184 FSRGIPLSPLEKKEKV--RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241
           +    P + L K   +      GT +TF PD  IF     +D   L    Q  A+L+  +
Sbjct: 201 YVNQHPTARLAKGAPMAEDESTGTSVTFWPDAAIFESTV-YDFETLRSRFQQMAFLNKGL 259

Query: 242 KTCWSCDKEI---------AEKYGIPEKE--EFYFPGGLKTYLQTKLENRSLISSEIFTG 290
           K   +  +E           +    P+ +   + +  G+K Y+   +++R     E    
Sbjct: 260 KISLTDLREPDLAGDEVAGDDDSTEPKHQSVTYQYMNGIKDYVSYLVKSRKATPVEEDVI 319

Query: 291 KTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
             E +      + E A+ W       + ++ NTI T EGGTHE G R ALT  + +YA  
Sbjct: 320 DFEAEDLKIGISAEVAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLVNRYARD 379

Query: 349 TQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
                ++  ++  DD+      ++SV +  P+F GQTKTKL + +A+  V+  + D    
Sbjct: 380 KNILKEKDDNLSGDDVREGLTAVVSVKLTTPQFEGQTKTKLGNSEAKTFVQRVMTDKLGD 439

Query: 407 YLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTE 465
           +   +P EA  +++  IE S  R+  +K RE  R+ +I     +P KL DC  +     E
Sbjct: 440 WFDAHPAEAKNIIQKAIEASRARIAAKKARENTRRKSIFESAGMPDKLKDCQSSNPEECE 499

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
           LFIVEGDSAGGSA Q RN   QA+LPLRGKILN   A  +++  +  I  L+ A+G    
Sbjct: 500 LFIVEGDSAGGSAIQGRNPETQAILPLRGKILNTERASIDRMMKSDTIESLITAVGGGYG 559

Query: 526 SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ- 584
            ++    +RY KVIIM DADVDGAHIA+L LT F++ M  +I   ++++  PPL+R+   
Sbjct: 560 EEFDVSKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKWT 619

Query: 585 GTKSVYAHDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
                Y + +  + + L + K  G+       I R+KGLGEM   +L ET MD   R L 
Sbjct: 620 RGDHDYVYTDRERDEKLAQGKAAGRQLPKGEGIQRYKGLGEMTYQELWETTMDPEHRILK 679

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           ++ I           ++ + LMG   + R  FIQ  A  +  +  
Sbjct: 680 QIHIED----AAAADETFSMLMGDDVEPRRLFIQRNAKDVRFIDA 720


>gi|326692694|ref|ZP_08229699.1| DNA topoisomerase IV subunit B [Leuconostoc argentinum KCTC 3773]
          Length = 693

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 244/658 (37%), Positives = 359/658 (54%), Gaps = 33/658 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           ++YD+ SI+ILEGLE VR RPGMYIG TD + LHHL  E++DNA+DE + G+ N I V++
Sbjct: 5   NHYDSDSIKILEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALGGFGNDIRVTI 64

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             N  +TV D GRG+PV  H     K T E+ILT LHAGGKF    Y  SGGLHGVG SV
Sbjct: 65  HENNAITVQDFGRGMPVGMHE--SGKPTPEVILTVLHAGGKFGQGGYATSGGLHGVGSSV 122

Query: 162 VNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VNALS+ L VT+ R    + + F + G P+  L          GT + F+PDP +F    
Sbjct: 123 VNALSESLQVTIVRDGHKWQEDFVNGGHPVDTLRDLGPTTEHSGTTVKFKPDPSLFSATV 182

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +    L +  +  A+L   VK   + ++           E +++  GL++++    E++
Sbjct: 183 -YKYDTLSERLRESAFLMSGVKFTLTDER-----VQPARVETYHYEKGLESFVGFLNEDK 236

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
           + I     T + E+ G     VE A  + +   E   S+ N + T +GGTHE G R A T
Sbjct: 237 ATIGPV-MTFEGEQSGI---VVEVAAQYNDGYSETLLSFVNNVRTQDGGTHEVGFRTAWT 292

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395
           +   +YA        +  ++   D+      ++S+ + E   +F GQTK KL + +A+  
Sbjct: 293 KAFNEYARKVNLLKDKDKNLEGTDVREGLAAVISLRVPEQFLQFEGQTKDKLGTPEARGI 352

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGK 452
           VE+ + +    +L++N      L+   I   E R   RK R+ +R    +  +   L GK
Sbjct: 353 VESIVNETLGRFLMENGDFGQNLIRKAIRAREAREAARKARDESRTGKSKGQKERLLSGK 412

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LA      A   ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N++
Sbjct: 413 LAPAQSKDATRNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLVDILKNEE 472

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  L+ A+G    + ++  D  ++K+IIMTDAD DGAHI +LLLTFFY+ M  LIE   +
Sbjct: 473 ISTLIYAIGGGVGNDFKVSDTAFDKIIIMTDADDDGAHIQTLLLTFFYKYMRPLIEAGRV 532

Query: 573 FLISPPLFRITQGTKS---VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           ++  PPL+R+   +K     +A   +  + I  +       + E++RFKGLGEM A  L 
Sbjct: 533 YIALPPLYRVKYASKKMADKFAWTNDELEAITSQ----SDARYELTRFKGLGEMNAPLLW 588

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF-IDDVGT 686
           ET M+   RTL+RV+I+  +      +  +  LMG K + R  +I+    F +D+ G+
Sbjct: 589 ETTMNPETRTLIRVKIDDAV----LAEKRVTTLMGDKVEPRRDWIEANVHFTLDEAGS 642


>gi|326387941|ref|ZP_08209547.1| DNA topoisomerase IV subunit B [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326207987|gb|EGD58798.1| DNA topoisomerase IV subunit B [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 670

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 345/661 (52%), Positives = 450/661 (68%), Gaps = 14/661 (2%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
                  A+++YD S+I +LEGLEPVR RPGMYIGGTDE+ALHHL +EV+DNAMDE +AG
Sbjct: 7   DKEPGSPAAESYDGSAIEVLEGLEPVRRRPGMYIGGTDERALHHLVAEVLDNAMDEAVAG 66

Query: 93  YANLIEVSLDGN----GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148
           +AN IE++L+      G +T+ DNGRGIPV+ HPK+P KS LE+ILTTLH+GGKF    Y
Sbjct: 67  HANRIEITLEEEPGTPGRITISDNGRGIPVDEHPKYPGKSALEVILTTLHSGGKFSGKAY 126

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
             SGGLHGVGISVVNALS    V VAR   +++Q+FSRG+  +PL +     N+RGT +T
Sbjct: 127 ATSGGLHGVGISVVNALSVLTRVEVARNKELYAQEFSRGLAQAPLARIGNAPNRRGTTVT 186

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F PD +IFG  A F  ARL ++ +SKAYL   V+  W C   +A    +P +  F FPGG
Sbjct: 187 FVPDTEIFGADARFKPARLFRLARSKAYLYAGVEIRWKCSASLAGDD-VPAEATFQFPGG 245

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEK----KGTHRGTVEWAIAWC-EENPEITSYCNTIL 323
           L  +L  ++  R  +++  F G+ +      G   G VEWAIAW    +   + YCNTI 
Sbjct: 246 LADHLAEQVSGRECVTTMPFAGRQDFPHGPDGQEMGRVEWAIAWPLWSDGSYSYYCNTIP 305

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           T +GGTHE GLR ALTRGI+ + EL   K+A  I  +D++  +  +LSVFIR+P+F  QT
Sbjct: 306 TPDGGTHEQGLRAALTRGIRAFGELIGQKKAKDIAPEDMITGSEVMLSVFIRDPQFQSQT 365

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443
           K +L S +A R VE A+RD FDH+L  N      LL  V+ER +ERLRR+ +REV RKTA
Sbjct: 366 KDRLTSPEAARLVEAAVRDHFDHFLTDNMDRGKALLGAVMERMDERLRRKAEREVKRKTA 425

Query: 444 I--RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
              RKLRLPGKL DCS   +  TELFIVEGDSAGGSAKQAR+R  QA+LP+RGKILNVAS
Sbjct: 426 TNARKLRLPGKLTDCSGEGSGETELFIVEGDSAGGSAKQARDRKTQAILPIRGKILNVAS 485

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
           A ++KIR NQ+I DL  ALGC TR     + LRY+++IIMTDADVDGAHIA+LL+TFF+Q
Sbjct: 486 ATADKIRANQEIADLGLALGCGTRKDCNADALRYDRIIIMTDADVDGAHIATLLMTFFFQ 545

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
           EM +++ + HL+L  PPL+R+T G+ S YA D+ H+ ++     K    K+E+SRFKGLG
Sbjct: 546 EMPEVVRRGHLYLAQPPLYRLTSGSTSAYARDDAHRAELETRMFK--GKKVEVSRFKGLG 603

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           EM   QL+ET M    R+L+R+ +  +       +D +++LMG   + RF FIQ RA+ I
Sbjct: 604 EMNPQQLRETTMSPASRSLIRITLPTEHEQRHAVKDLVDRLMGRNPEHRFMFIQNRAADI 663

Query: 682 D 682
           D
Sbjct: 664 D 664


>gi|260662108|ref|ZP_05863004.1| DNA topoisomerase IV, B subunit [Lactobacillus fermentum 28-3-CHN]
 gi|260553491|gb|EEX26383.1| DNA topoisomerase IV, B subunit [Lactobacillus fermentum 28-3-CHN]
          Length = 665

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 245/651 (37%), Positives = 359/651 (55%), Gaps = 34/651 (5%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YDASSI+IL+GLE VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I V+++ 
Sbjct: 8   YDASSIKILKGLEAVRKRPGMYIGSTDVHGLHHLVYEIVDNAVDEALSGFGDEINVTIEP 67

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN-STYEISGGLHGVGISVV 162
           +  +TV D+GRG+PV  H     K T E+I+T LHAGGKF     Y+ SGGLHGVG SVV
Sbjct: 68  DNAITVQDHGRGMPVGMHE--SGKPTPEVIMTILHAGGKFGQADGYKSSGGLHGVGASVV 125

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS +L +T+ R +  + +KF  G  P+  L++  K R   GT +TF+PDP IF     
Sbjct: 126 NALSSKLTLTIVRDHVCYQEKFRDGGQPIGTLKELGKTREGSGTTVTFKPDPTIFSTTV- 184

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +D   L +  +  A+L   VK   +  +E  E     ++E F F  G++ ++    E++ 
Sbjct: 185 YDYQTLARRLRESAFLLKGVKITLTDKREGME-----QEEVFQFANGIEDFVDYLNEDKD 239

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340
            +     +    + G     V+ A  + +   E   S+ N + T  GGTHE G R A T+
Sbjct: 240 TLGKVF-SFTGTQDGV---EVDVAAQYNDGYTENLLSFVNNVRTPGGGTHEVGFRGAWTK 295

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
               YA       +R  ++   D+      ++SV I E   +F GQTK KL + +A++ V
Sbjct: 296 TFNDYARKVGLLKERDKNLEGTDVREGLTAVVSVRIPERILQFEGQTKGKLGTPEARKIV 355

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL---RLPGKL 453
           +  + +   + L++N   A  L++  +   + R   RK R  +R    +      L GKL
Sbjct: 356 DTIVSEQLGYALMENSDLAQSLIKKALRARQAREAARKARNQSRSGKRKGRKERNLSGKL 415

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                  +   ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + +  N+++
Sbjct: 416 TPAQSKNSAKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVMKNEEL 475

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++  +G    ++++ ED  Y+K+IIMTDAD DGAHI  LLLTFFY+ M  +IE   ++
Sbjct: 476 NTIIYTVGAGVGTEFKVEDANYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGRVY 535

Query: 574 LISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+R+ +G     K  YA   +     L +  K G     + RFKGLGEM A QL 
Sbjct: 536 IAMPPLYRLQKGRGKNTKITYAWTNDE----LTKLTKKGSKGTSLQRFKGLGEMNADQLW 591

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV I       +  +  I  LMG K + R ++I +   F
Sbjct: 592 ETTMNPETRTLIRVRIED----AELAEKRITTLMGNKVEPRREWIDQNVHF 638


>gi|138895303|ref|YP_001125756.1| DNA topoisomerase IV subunit B [Geobacillus thermodenitrificans
           NG80-2]
 gi|134266816|gb|ABO67011.1| Topoisomerase IV subunit B [Geobacillus thermodenitrificans NG80-2]
          Length = 617

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 237/629 (37%), Positives = 341/629 (54%), Gaps = 34/629 (5%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIG TD + LHHL  E++DN++DE +AGY N I V +  +  +TV+D GRG+PV  H  
Sbjct: 1   MYIGSTDSRGLHHLVYEIVDNSVDEALAGYGNYILVQIHKDNSVTVLDEGRGMPVGMHK- 59

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
              K T E+ILT LHAGGKF    Y+ SGGLHGVG SVVNALS+ L VT+ R   I+ Q+
Sbjct: 60  -LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSEWLVVTIHRDGFIYRQR 118

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           F  G       +     NK GT I F+PDP IF     FD   L +  +  A+L   +K 
Sbjct: 119 FENGGKPVTTLENIGTTNKTGTIIQFKPDPTIFSTTV-FDYETLSERLRESAFLLKGLKI 177

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
               ++          +E F++  G++ ++    E + ++         E+ G     VE
Sbjct: 178 ELVDER-------TGMREVFHYENGIEAFVAYLNEEKDVLHPVA-YFAGEQNGI---EVE 226

Query: 304 WAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISD 360
           +A  + +   E   S+ N + T +GGTHE+G + A+TR   +YA       ++  ++   
Sbjct: 227 FAFQFHDGYSENVLSFVNNVRTKDGGTHEAGAKTAMTRVFNEYARRVGLLKEKDKNLEGT 286

Query: 361 DLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
           D+      I+SV I E   +F GQTK KL + +A+  V+  + +   ++L +NP  +  L
Sbjct: 287 DIREGMSAIVSVRIPEHLLQFEGQTKGKLGTSEARSAVDAVVSEQLTYFLQENPDVSAML 346

Query: 419 LEWVIERSEERLRRRKQREVNRKTAIRKLRLP---GKLADCSQNIAHGTELFIVEGDSAG 475
           ++  I   + R   RK RE  R    RK +     GKL           EL++VEGDSAG
Sbjct: 347 IKKAIRAYQAREAARKAREEARSGKKRKGKEALLSGKLTPAQGRNPQKNELYLVEGDSAG 406

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           GSAKQ R+R  QAVLPLRGK++N   A    I  N++I  ++ A+G    + +  ED+ Y
Sbjct: 407 GSAKQGRDRRFQAVLPLRGKVINTEKAKLGDILKNEEINTIIHAIGGGVGADFSIEDINY 466

Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG--TKS--VYA 591
           +KVIIMTDAD DGAHI  LLLTFFY+ M  LIE   +++  PPL++I++G   K    YA
Sbjct: 467 DKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVYIALPPLYKISKGSGKKETVEYA 526

Query: 592 HDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651
             +E  ++I ++  +       I R+KGLGEM A QL ET M+   RTL+RV I      
Sbjct: 527 WTDEQLREITKKMGR----GYTIQRYKGLGEMNADQLWETTMNPETRTLIRVRIED---- 578

Query: 652 LKDTQDSINKLMGTKADERFKFIQERASF 680
               +  +  LMG K + R K+I+   +F
Sbjct: 579 AARAERRVTTLMGDKVEPRRKWIETHVAF 607


>gi|42561045|ref|NP_975496.1| DNA topoisomerase IV subunit B [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|42492542|emb|CAE77138.1| DNA TOPOISOMERASE IV SUBUNIT B [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|301321176|gb|ADK69819.1| DNA topoisomerase IV, B subunit [Mycoplasma mycoides subsp.
           mycoides SC str. Gladysdale]
          Length = 643

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 244/644 (37%), Positives = 348/644 (54%), Gaps = 28/644 (4%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YD S+I++LEGL+ VR RPGMYIG TD + LHHL  E++DNA+DE +AGY   I+V L+ 
Sbjct: 7   YDESAIQVLEGLDAVRKRPGMYIGSTDNRGLHHLVWEIVDNAIDEALAGYCTQIDVILEK 66

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +  +T+ DNGRGIP   H     KST E+I + LHAGGKFD++ Y+ SGGLHGVG SV N
Sbjct: 67  DNSITISDNGRGIPTGMHK--TGKSTPEVIFSILHAGGKFDSTAYKSSGGLHGVGSSVTN 124

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS     T+ R   I   +F  G  L           K GT I F PD  IF +   F+
Sbjct: 125 ALSKRFKATIYRDKKIHEIEFKNGGKLEKPLTFIANTYKTGTTINFLPDDSIFSN-TKFN 183

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
            + + +  +  A L+  +K   S               E+ F  GL  +++  ++++ +I
Sbjct: 184 FSLISERLKESALLNSGLKITLSD-------LISNRYVEYQFQYGLVEFIKELVDDKKVI 236

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIK 343
           +  I      K       +++     ++N  I  + N + T +GGTH  G +  L R I 
Sbjct: 237 TDIITINNESKNIIAEIALQYTE---DDNEIILGFANNVKTSDGGTHLVGFKSGLIRAIN 293

Query: 344 KYAELTQ-NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENAL 400
            YA+  +  K    + S+DL    V I++V I E   E+ GQTK+KL + DA+  VE  +
Sbjct: 294 DYAKEQKILKDKAKLDSNDLREGLVAIVTVKIPENLIEYEGQTKSKLGTSDAKTVVEQIV 353

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP---GKLADCS 457
            +   ++L++N + A K++E      + R+  ++ R+  +    +K       GKL    
Sbjct: 354 YEFMSYWLIENKVLANKIIENAFNAQKARIAAKQARQAIKSVKGKKNINKLMLGKLTPAQ 413

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                  EL++VEGDSAGGSAK  RNR  QA+LPLRGK++N   A    +  N++I  ++
Sbjct: 414 GKKREINELYLVEGDSAGGSAKTGRNRKFQAILPLRGKVINSEKAKLVDLLKNEEIQSII 473

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G      +   D+ Y K+IIMTDAD DGAHI +LLLTFFY+ M DLI  K +++  P
Sbjct: 474 NAIGAGVGKDFDISDINYGKIIIMTDADTDGAHIQTLLLTFFYRHMKDLIVHKKVYIALP 533

Query: 578 PLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PL++IT   KS  Y  DEE     L EF K    K EI R+KGLGEM A QL +T MD  
Sbjct: 534 PLYKITFNDKSFIYLWDEEE----LNEFNKTNTKKYEIQRYKGLGEMNADQLWQTTMDPK 589

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            R +++V I   L      +     LMG   ++R  +IQE   F
Sbjct: 590 NRKIIQVTITDGL----LAERMFKTLMGDDVEKRKLWIQENVKF 629


>gi|104773993|ref|YP_618973.1| DNA topoisomerase IV subunit B [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116514009|ref|YP_812915.1| DNA topoisomerase IV subunit B [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|103423074|emb|CAI97795.1| DNA topoisomerase IV, subunit B [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116093324|gb|ABJ58477.1| DNA topoisomerase IV subunit B [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|325125698|gb|ADY85028.1| DNA topoisomerase IV subunit B [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 643

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 237/649 (36%), Positives = 350/649 (53%), Gaps = 29/649 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
             + YD SSI+IL GLE VR RPGMYIG TD   L+ L  E++DN++DE +AG+   I V
Sbjct: 2   PKNTYDDSSIQILHGLEAVRKRPGMYIGSTDIHGLNQLVYEIVDNSVDEAMAGFGQEINV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  +TV D GRG+P   H     + T+E+ILT LHAGGKF    Y+ SGGLHGVG 
Sbjct: 62  TIHEDNSVTVQDFGRGMPTGMH--ASGRPTIEVILTVLHAGGKFTEQNYKTSGGLHGVGS 119

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           SVVNALS  + V V R    + ++F  G  P+  L      + K GT ITF+PDP IF  
Sbjct: 120 SVVNALSSYMKVHVVRDGKAYEEEFQNGGHPIGTLRCLGATKEKTGTTITFKPDPMIFST 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              ++   + +  +  A+L   VK   + ++           + F +  G+++++    E
Sbjct: 180 T-KYNYETIQERIRESAFLLKGVKFTLTDERTPN------HHDVFQYDDGIESFVAYLNE 232

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVA 337
            +  I       +  + G     +E+A  + +   E   S+ N + T +GG+HE G R  
Sbjct: 233 GKGTIGKVF-YFEGSQDG---MEIEFAGQYSDSYSENFVSFVNNVRTADGGSHEVGARSG 288

Query: 338 LTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
            TR    YA+      K+  ++   D       +LSV I E   EF GQTK KL +  A+
Sbjct: 289 FTRAFNDYAKKQGLLGKKDKNLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQAR 348

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLPG 451
             V++ + +   +YL++N   A  L++      + R   +K R+ +R      +K  L G
Sbjct: 349 SAVDSIVYEKLSYYLLENGEWAQDLVKKAQRARDAREAAKKARDESRNGKKRHKKEVLSG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N+
Sbjct: 409 KLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQRAKLADIFKNE 468

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    ++++ ED  Y+K+IIMTDAD DGAHI  LLLTFFY+ M  +IE   
Sbjct: 469 EINTMIHTIGAGVGTEFKVEDSNYDKIIIMTDADDDGAHIQILLLTFFYRYMRPMIEAGK 528

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPL+RI++   ++YA  +E + +  ++  K       + RFKGLGEM A QL ET
Sbjct: 529 VYIALPPLYRISKKQTNLYAWTDEERDEYEKKVGK----GYALQRFKGLGEMNADQLWET 584

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            M+   R L+RV I+      +  +  +  LMG +A  R K+I+E   F
Sbjct: 585 TMNPESRMLIRVRIDD----AQLAERRVTTLMGDQASARRKWIEENVKF 629


>gi|184155379|ref|YP_001843719.1| DNA topoisomerase IV subunit B [Lactobacillus fermentum IFO 3956]
 gi|183226723|dbj|BAG27239.1| topoisomerase IV subunit B [Lactobacillus fermentum IFO 3956]
          Length = 665

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 245/651 (37%), Positives = 359/651 (55%), Gaps = 34/651 (5%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YDASSI+IL+GLE VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I V+++ 
Sbjct: 8   YDASSIKILKGLEAVRKRPGMYIGSTDAHGLHHLVYEIVDNAVDEALSGFGDEINVTIEP 67

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN-STYEISGGLHGVGISVV 162
           +  +TV D+GRG+PV  H     K T E+I+T LHAGGKF     Y+ SGGLHGVG SVV
Sbjct: 68  DNAITVQDHGRGMPVGMHE--SGKPTPEVIMTILHAGGKFGQADGYKSSGGLHGVGASVV 125

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS +L +T+ R +  + +KF  G  P+  L++  K R   GT +TF+PDP IF     
Sbjct: 126 NALSSKLTLTIVRDHVRYQEKFRDGGQPIGTLKELGKTREGSGTTVTFKPDPTIFSTTV- 184

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +D   L +  +  A+L   VK   +  +E  E     ++E F F  G++ ++    E++ 
Sbjct: 185 YDYQTLARRLRESAFLLKGVKITLTDKREGME-----QEEVFQFANGIEDFVAYLNEDKD 239

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340
            +     +    + G     V+ A  + +   E   S+ N + T  GGTHE G R A T+
Sbjct: 240 TLGKVF-SFTGTQDGV---EVDVAAQYNDGYTENLLSFVNNVRTPGGGTHEVGFRGAWTK 295

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
               YA       +R  ++   D+      ++SV I E   +F GQTK KL + +A++ V
Sbjct: 296 TFNDYARKVGLLKERDKNLEGTDVREGLTAVVSVRIPERILQFEGQTKGKLGTPEARKIV 355

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL---RLPGKL 453
           +  + +   + L++N   A  L++  +   + R   RK R  +R    +      L GKL
Sbjct: 356 DTIVSEQLGYALMENSDLAQSLIKKALRARQAREAARKARNQSRSGKRKGRKERNLSGKL 415

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                  +   ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + +  N+++
Sbjct: 416 TPAQSKNSAKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVMKNEEL 475

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++  +G    ++++ ED  Y+K+IIMTDAD DGAHI  LLLTFFY+ M  +IE   ++
Sbjct: 476 NTIIYTVGAGVGTEFKVEDANYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGRVY 535

Query: 574 LISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+R+ +G     K  YA   +     L +  K G     + RFKGLGEM A QL 
Sbjct: 536 IAMPPLYRLQKGRGKNTKITYAWTNDE----LTKLTKKGSKGTSLQRFKGLGEMNADQLW 591

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV I       +  +  I  LMG K + R ++I +   F
Sbjct: 592 ETTMNPETRTLIRVRIED----AELAEKRITTLMGNKVEPRREWIDQNVHF 638


>gi|260664458|ref|ZP_05865310.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii SJ-7A-US]
 gi|260561523|gb|EEX27495.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii SJ-7A-US]
          Length = 652

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 233/658 (35%), Positives = 355/658 (53%), Gaps = 33/658 (5%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
             + + +++YD SSI+IL GLE VR RPGMYIG TD K ++ L  E++DN++DE +AGY 
Sbjct: 3   GKSLAKANSYDDSSIQILHGLEAVRKRPGMYIGSTDIKGINQLVYEIVDNSVDEAMAGYG 62

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             I V++  +  +TV D GRG+P   H       T+E+I T LHAGGKF    Y+ SGGL
Sbjct: 63  KEINVTIHEDNSVTVQDFGRGMPTGMHE--SGIPTIEVIFTVLHAGGKFTEKNYKTSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDP 213
           HGVG SVVNALS  L V V R    + ++F   G P+  L+   K  +K GT ITF+PD 
Sbjct: 121 HGVGSSVVNALSSYLKVRVVRGGQAYEEEFHDGGKPIGTLKHLGKTNDKTGTTITFKPD- 179

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +       +    + +  +  A+L   VK     ++           EEF +  G+K+++
Sbjct: 180 ERVFSTTKYKYETIEERIRESAFLLKGVKFTLKDERTPN------HYEEFLYTDGIKSFV 233

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHES 332
               E +     ++F  + ++       +E++  + +   E   S+ N + T +GG+HE 
Sbjct: 234 SYLNEGKDTFG-DVFYFEGKQDSI---EIEFSGQYNDGYSENFVSFVNNVRTIDGGSHEM 289

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLV 388
           G R   TR    YA+      ++  +I   D       +LS+ + E   EF GQTK KL 
Sbjct: 290 GARSGFTRAFNDYAKKQGLLKEKEKNIEGSDYREGLSAVLSIKVPEELLEFEGQTKGKLG 349

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RK 446
           +  A+  V+  + +   +YL++N   A  L++   +  + R   +K R+ +R      +K
Sbjct: 350 TPQARSAVDALVYEKMSYYLLENGEFAQTLVKKAQKARDAREAAKKARDESRNGKKRRKK 409

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             L GKL           ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + 
Sbjct: 410 ELLSGKLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQD 469

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           I  N++I  ++  +G    ++++ ED  Y+K+IIMTDAD DGAHI  LLLTFFY+ M  +
Sbjct: 470 IFKNEEINTMIHTIGAGVGAEFKIEDANYDKIIIMTDADDDGAHIQILLLTFFYRYMRPM 529

Query: 567 IEQKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
           +E   +++  PPL+R+ +G+    K  YA  +E  ++  +   K       + RFKGLGE
Sbjct: 530 VEAGRVYIALPPLYRLQKGSGAKAKIEYAWTDEELERDEKAMGK----GYSLQRFKGLGE 585

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           M A QL +T M+ + R L+RV+I+         +  +  LMG K + R K+I++   F
Sbjct: 586 MNADQLWQTTMNPDSRMLIRVKIDD----AALAERRVTTLMGDKVEVRRKWIEQNVKF 639


>gi|227515151|ref|ZP_03945200.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC
           14931]
 gi|227086483|gb|EEI21795.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC
           14931]
 gi|299783206|gb|ADJ41204.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum CECT
           5716]
          Length = 665

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 245/651 (37%), Positives = 359/651 (55%), Gaps = 34/651 (5%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YDASSI+IL+GLE VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I V+++ 
Sbjct: 8   YDASSIKILKGLEAVRKRPGMYIGSTDAHGLHHLVYEIVDNAVDEALSGFGDEINVTIEP 67

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN-STYEISGGLHGVGISVV 162
           +  +TV D+GRG+PV  H     K T E+I+T LHAGGKF     Y+ SGGLHGVG SVV
Sbjct: 68  DNAITVQDHGRGMPVGMHE--SGKPTPEVIMTILHAGGKFGQADGYKSSGGLHGVGASVV 125

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS +L +T+ R +  + +KF  G  P+  L++  K R   GT +TF+PDP IF     
Sbjct: 126 NALSSKLTLTIVRDHVRYQEKFRDGGQPIGTLKELGKTREGSGTTVTFKPDPTIFSTTV- 184

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +D   L +  +  A+L   VK   +  +E  E     ++E F F  G++ ++    E++ 
Sbjct: 185 YDYQTLARRLRESAFLLKGVKITLTDKREGME-----QEEVFQFENGIEDFVAYLNEDKD 239

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340
            +     +    + G     V+ A  + +   E   S+ N + T  GGTHE G R A T+
Sbjct: 240 TLGKVF-SFTGTQDGV---EVDVAAQYNDGYTENLLSFVNNVRTPGGGTHEVGFRGAWTK 295

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
               YA       +R  ++   D+      ++SV I E   +F GQTK KL + +A++ V
Sbjct: 296 TFNDYARKVGLLKERDKNLEGTDVREGLTAVVSVRIPERILQFEGQTKGKLGTPEARKIV 355

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL---RLPGKL 453
           +  + +   + L++N   A  L++  +   + R   RK R  +R    +      L GKL
Sbjct: 356 DTIVSEQLGYALMENSDLAQSLIKKALRARQAREAARKARNQSRSGKRKGRKERNLSGKL 415

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                  +   ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + +  N+++
Sbjct: 416 TPAQSKNSAKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVMKNEEL 475

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++  +G    ++++ ED  Y+K+IIMTDAD DGAHI  LLLTFFY+ M  +IE   ++
Sbjct: 476 NTIIYTVGAGVGTEFKVEDANYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGRVY 535

Query: 574 LISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +  PPL+R+ +G     K  YA   +     L +  K G     + RFKGLGEM A QL 
Sbjct: 536 IAMPPLYRLQKGRGKNTKITYAWTNDE----LTKLTKKGSKGTSLQRFKGLGEMNADQLW 591

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV I       +  +  I  LMG K + R ++I +   F
Sbjct: 592 ETTMNPETRTLIRVRIED----AELAEKRITTLMGNKVEPRREWIDQNVHF 638


>gi|295115103|emb|CBL35950.1| DNA topoisomerase IV subunit B [butyrate-producing bacterium SM4/1]
          Length = 639

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 245/657 (37%), Positives = 345/657 (52%), Gaps = 35/657 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            YDA SI +LEGLE VR RPGMYIGG   K L+HL  E++DN++DE +AG    I V+L+
Sbjct: 5   QYDADSITVLEGLEAVRKRPGMYIGGVGTKGLNHLIYEIVDNSVDEHLAGECTSIWVTLE 64

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G  TV DNGRGIPVE H K    S   ++L+TLHAGGKFDNS Y+ SGGLHGVG SVV
Sbjct: 65  ADGSCTVRDNGRGIPVEMHKK--GVSAERVVLSTLHAGGKFDNSAYKTSGGLHGVGSSVV 122

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPL-----SPLEKKEKVRNKRGTRITFRPDPKIFG 217
           NALS+ L + + +   I    + RGIP+       L    K +   GT I F PD  IF 
Sbjct: 123 NALSEHLDIKIYKNGQIHHDAYERGIPVVELVDGLLPVIGKTKE-TGTCINFLPDDTIFE 181

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F A  L       AYL+  +   +   +   E+  +     +  P G+  Y++   
Sbjct: 182 K-TKFKAEWLKSRLHETAYLNPALTIYYENRRAGEEEKIV-----YSEPDGIIAYVKEIN 235

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRV 336
             ++ +       K   +G     VE AI + +   E    +CN I T EGGTH +G + 
Sbjct: 236 AGKTPVHEP-IYFKGSMEGI---EVEAAIQFVDTFEENILGFCNNIFTQEGGTHLAGFKT 291

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
             T  I  YA       ++  +    D       ++++   +P F GQTKTKL S DA +
Sbjct: 292 KFTMLINSYARELGILKEKDSNFTGADTRNGMTAVIAIKHPDPIFEGQTKTKLASADATK 351

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454
            V     +    +  +N      ++    + ++ R    K +      +       GKL+
Sbjct: 352 AVFTLAGEELQRFFDRNLETLKAVIGCAEKSAKIRKAEEKAKTNMLTKSRFSFDSNGKLS 411

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           +C    A   E+FIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +K+  N +I 
Sbjct: 412 NCESRDAEKCEIFIVEGDSAGGSAKMGRNRQYQAILPIRGKILNVEKASMDKVLANAEIK 471

Query: 515 DLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
            ++ A GC       + +    LRY K+I+MTDADVDG+HI +LLLTF Y+ M DLI + 
Sbjct: 472 TMINAFGCGFSEGYGNDFDISKLRYNKIILMTDADVDGSHIDTLLLTFLYRFMPDLITEG 531

Query: 571 HLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           H+++  PPLF++  +  +  Y +DE    K LE++KK   G   + R+KGLGEM A QL 
Sbjct: 532 HVYIAMPPLFKVIPKKGEEQYLYDE----KALEKYKKTHAGGFTLQRYKGLGEMDAEQLW 587

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           ET ++   R L +VEI     + + T+     LMG+    R +FI + A   + +  
Sbjct: 588 ETTLNPENRVLKQVEIEDARMASEITE----MLMGSDVPPRRQFIYDHAEEAE-IDA 639


>gi|323342062|ref|ZP_08082295.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322464487|gb|EFY09680.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 639

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 239/649 (36%), Positives = 365/649 (56%), Gaps = 31/649 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           ++ NY ASSI ILEGLE VR RPGMYIG TD + LHHL  E++DNA+DE + GY   I +
Sbjct: 5   STQNYSASSIEILEGLEAVRKRPGMYIGSTDSRGLHHLVWEIMDNAIDEALNGYGTTIRL 64

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN-STYEISGGLHGVG 158
           +++ +  +++ D GRG+P+E H      S L++I T LHAGGKF     Y+ SGGLHGVG
Sbjct: 65  NIEDDMTVSIRDEGRGMPIETH--TSGVSALQVIFTVLHAGGKFSEAGGYKTSGGLHGVG 122

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS+E++V+V R++  ++  F  G       KK   R   G+R+ F+ DP IF +
Sbjct: 123 ASVVNALSEEVNVSVFRKDGTYNMTFRNGGKEIEPLKKTSDRGPIGSRVRFKADPTIFKN 182

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    + +  Q  A+L   ++   + ++    +        + +  GL+ +++   E
Sbjct: 183 S-KFSFDTICERVQESAFLLQGIQFIVTDERVNVTRE-------YRYEKGLEAFMEYIHE 234

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           ++ +++  I    +++      +V+ A+ + E    +  SY N + T +GGTH +G R  
Sbjct: 235 DQEVLNDVILLNGSDQ----GISVQIALQYNEGYNEDTYSYVNLVRTHDGGTHVAGFRSG 290

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
            T+ I ++A        +  +   +D+      ILSV I E   +F GQTK KL +  A+
Sbjct: 291 FTKVINEWARKHNLLKDKEKNFEGNDVREGLSVILSVSIPENLLQFEGQTKGKLGTPVAK 350

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP--G 451
             V+  + +   +YL  +  EATK++  + + S  RL  RK RE  R     K+     G
Sbjct: 351 GVVDAVISEQLPYYLDVHHEEATKIITKIQKASHARLAARKAREQARNGKRNKIERILSG 410

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLA+      +  EL++VEGDSAGGSAKQ R+   QA+LPLRGK+LN   A  E I  N+
Sbjct: 411 KLANAQTRNKNKNELYLVEGDSAGGSAKQGRDSKFQAILPLRGKVLNTQKAKFEDILKNE 470

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++  ++  +G      +  +D  Y K+IIMTDAD DGAHI  LLLTFF++ M  L+E  +
Sbjct: 471 ELNTIIHCVGAGVGKDFELKDCNYNKIIIMTDADTDGAHIQVLLLTFFFRHMRPLVEAGY 530

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPL+R+  G    YA+ E+      +++     GKIE+ R+KGLGEM A QL ET
Sbjct: 531 VYIAQPPLYRVKSGKNVHYAYTEDELDAFRKQY-----GKIELQRYKGLGEMNADQLWET 585

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            MD   R+L++V+IN  L         ++ LMG K D R ++I++  +F
Sbjct: 586 TMDPETRSLIQVQINDFLV----ADKRVSVLMGDKVDVRREWIEQNVAF 630


>gi|325686241|gb|EGD28284.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 643

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 237/649 (36%), Positives = 351/649 (54%), Gaps = 29/649 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
             + YD SSI+IL GLE VR RPGMYIG TD   L+ L  E++DN++DE +AG+   I V
Sbjct: 2   PKNTYDDSSIQILHGLEAVRKRPGMYIGSTDIHGLNQLVYEIVDNSVDEAMAGFGQEINV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  +TV D GRG+P   H     + T+E+ILT LHAGGKF    Y+ SGGLHGVG 
Sbjct: 62  TIHEDNSVTVQDFGRGMPTGMH--ASGRPTIEVILTVLHAGGKFTEQNYKTSGGLHGVGS 119

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           SVVNALS  + V V R    + ++F  G  P+  L      + K GT ITF+PDP IF  
Sbjct: 120 SVVNALSSYMKVHVVRDGKAYEEEFKNGGHPIGTLRCLGATKEKTGTTITFKPDPMIFST 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              ++   + +  +  A+L   VK   + ++           + F +  G+++++    E
Sbjct: 180 T-KYNYETIQERIRESAFLLKGVKFTLTDERTPN------HHDVFQYDDGIESFVSYLNE 232

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVA 337
            +  I       +  + G     +E+A  + +   E   S+ N + T +GG+HE G R  
Sbjct: 233 GKGTIGKVFC-FEGSQDG---MEIEFAGQYSDSYSENFVSFVNNVRTADGGSHEVGARSG 288

Query: 338 LTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
            TR    YA+      K+  ++   D       +LSV I E   EF GQTK KL +  A+
Sbjct: 289 FTRAFNDYAKKQGLLGKKDKNLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQAR 348

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLPG 451
             V++ + +   +YL++N   A  L++  +   + R   +K R+ +R      +K  L G
Sbjct: 349 SAVDSIVYEKLSYYLLENGEWAQDLVKKALRARDAREAAKKARDESRNGKKRHKKEVLSG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N+
Sbjct: 409 KLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQRAKLADIFKNE 468

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    ++++ ED  Y+K+IIMTDAD DGAHI  LLLTFFY+ M  +IE   
Sbjct: 469 EINTMIHTIGAGVGTEFKVEDSNYDKIIIMTDADDDGAHIQILLLTFFYRYMRPMIEAGK 528

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPL+RI++   ++YA  +E + +  ++  K       + RFKGLGEM A QL ET
Sbjct: 529 VYIALPPLYRISKKQTNLYAWTDEERDEDEKKVGK----GYALQRFKGLGEMNADQLWET 584

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            M+   R L+RV I+      +  +  +  LMG +A  R K+I+E   F
Sbjct: 585 TMNPESRMLIRVRIDD----AQLAERRVTTLMGDQASARRKWIEENVKF 629


>gi|295110276|emb|CBL24229.1| DNA topoisomerase IV subunit B [Ruminococcus obeum A2-162]
          Length = 641

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 246/661 (37%), Positives = 347/661 (52%), Gaps = 36/661 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  + YDA SI +LEGLE VR RPGMYIG    K L+HL  E++DNA+DE +AGY +LI 
Sbjct: 2   AKKETYDAGSISVLEGLEAVRKRPGMYIGSVSRKGLNHLIYEIVDNAVDEHLAGYCSLIH 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V L+ +G  TV DNGRGIPV+ H K    S   ++ TTLHAGGKFDNS Y+ SGGLHGVG
Sbjct: 62  VVLEKDGSCTVTDNGRGIPVDMHEK--GMSAERLVFTTLHAGGKFDNSAYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGTRITFRPDP 213
            SVVNALS  L + V+R   +    + +G+P   LE     K  + +   GT I F PDP
Sbjct: 120 SSVVNALSTYLDIKVSRDGYVHHDHYEQGVPTLELENGLLPKLGRTKE-TGTCINFLPDP 178

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IF     F A  +       AYL+  +   +   +          KEE++ P G+  Y+
Sbjct: 179 EIFEK-TRFSATDVKSRLHETAYLNPELTIVFEDLR-----GTETVKEEYHEPEGIVGYI 232

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           Q    +   +       K E  G     VE A  +  E    +  +CN I   EGGTH +
Sbjct: 233 QDMNHSTEALHEP-VYLKGEADGIQ---VEVAFQYTNEFRENVLGFCNNIYNAEGGTHLT 288

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G +   T  +  YA        +  +    D+      ++S+    P F GQTKTKL + 
Sbjct: 289 GFKTTFTTVMNTYAREIGVLKDKDPNFTGADIRNGMTAVVSIKHPAPRFEGQTKTKLDNQ 348

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
           DA +     L +    Y  +N      +L    + ++ R    + +              
Sbjct: 349 DAAKATGKVLGEQLVLYFDRNLETLKTILSCAEKAAKIRKTEERAKTNLLTKQKYSFDSN 408

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLA+C +      E+FIVEGDSAGGSAK ARNR+ QA+LP+RGKILNV  A  +K+  N
Sbjct: 409 GKLANCEKKDPAQCEIFIVEGDSAGGSAKTARNRNYQAILPIRGKILNVEKATIDKVLAN 468

Query: 511 QQIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
            +I  ++ A GC       + +    LRY+K++IM DADVDGAHI++LLLT FY+ M +L
Sbjct: 469 AEIKTMINAFGCGFSEGYGNDFDISKLRYDKIVIMADADVDGAHISTLLLTLFYRFMPEL 528

Query: 567 IEQKHLFLISPPLFRI--TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
           I + H+++  PPL++    +G +  Y +D++  +K     K H  G   + R+KGLGEM 
Sbjct: 529 IYEGHVYIAMPPLYKAMPKKGPEE-YLYDDKALEKYR---KTHKPGSFTLQRYKGLGEMD 584

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           A QL ET ++   R + RVEI     +   T+     LMG++   R  FI E A+  + +
Sbjct: 585 AEQLWETTLNPETRRMKRVEIEDARLASSVTE----VLMGSEVPPRKAFIYEHAADAE-L 639

Query: 685 G 685
            
Sbjct: 640 D 640


>gi|241896016|ref|ZP_04783312.1| DNA topoisomerase IV subunit B [Weissella paramesenteroides ATCC
           33313]
 gi|241870747|gb|EER74498.1| DNA topoisomerase IV subunit B [Weissella paramesenteroides ATCC
           33313]
          Length = 675

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 248/663 (37%), Positives = 365/663 (55%), Gaps = 35/663 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  ++Y   SI +LEGLE VR RPGMYIG TD K LHHL  E+ DNA+DE +AGY + I 
Sbjct: 2   TKKNDYSDDSITVLEGLEAVRKRPGMYIGSTDGKGLHHLVYEIFDNAVDEALAGYGDEIN 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  N  +TVVD+GRG+PV  H     K T E+ILT LHAGGKF    Y+ SGGLHGVG
Sbjct: 62  VTIHENNAITVVDHGRGMPVGMH--SSGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
            SVVNALS +L VT+ R    + + F + G P   L+K  K +   GT +TF+PD KIF 
Sbjct: 120 SSVVNALSSDLVVTIVRDGVKYQEHFINGGHPDGTLKKIGKTKETSGTTVTFKPDSKIFS 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               ++   L +  +  A+L   VK   + ++   E     + E ++FP G+K ++    
Sbjct: 180 TTI-YNFNTLAERLRESAFLLRNVKITLTDERPGQE-----QTETYHFPEGIKAFVDYLN 233

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           E++  +   +   +   +G     VE +  + +     + S+ N + T +GGTHE+GLR 
Sbjct: 234 EDKDTLGDIM-YFEGIAQGV---EVEVSAQYNDGFSETMMSFVNNVRTPDGGTHEAGLRS 289

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392
           A T+   +YA       ++  ++   D+      ++S+ I E   +F GQTK KL + +A
Sbjct: 290 AWTKAFNEYARRVNLLKEKDKNLEGSDVREGLSAVISLRIPENILQFEGQTKEKLGTPEA 349

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---L 449
           +  V+N + +    YL++N   +  L+   +   E R   RK R+  R    +      L
Sbjct: 350 RTIVDNIITEQLGFYLMENGEFSQSLIRKSLRAREAREAARKARDEARSGKKKGKSERLL 409

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
            GKL       A+  ELF+VEGDSAGGSAKQ RNR  QA+LPLRGK+LN   A  + I  
Sbjct: 410 SGKLTPAQSKNANQNELFLVEGDSAGGSAKQGRNRKFQAILPLRGKVLNTEKAKLQDIMK 469

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N++I  ++  +G     +++  D  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  LI+ 
Sbjct: 470 NEEISTIIYTIGAGVGPEFKVADANYDKIIIMTDADDDGAHIQTLLLTFFYKYMRPLIDA 529

Query: 570 KHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
             +++  PPL+ + +G     K  YA  +       E   +       + RFKGLGEM A
Sbjct: 530 GKVYIALPPLYMLRKGKGKQQKIEYAWTDSQLATAEETIGR----GYTLQRFKGLGEMNA 585

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF--IDD 683
            QL  T MD  +RTL+RV+I+  +      +  +  LMG K + R K+I+   +F  +++
Sbjct: 586 EQLWATTMDPTQRTLIRVKIDDAM----LAEKRVTTLMGDKVEPRRKWIESNVAFNLVEE 641

Query: 684 VGT 686
             T
Sbjct: 642 GDT 644


>gi|225572725|ref|ZP_03781480.1| hypothetical protein RUMHYD_00914 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039898|gb|EEG50144.1| hypothetical protein RUMHYD_00914 [Blautia hydrogenotrophica DSM
           10507]
          Length = 641

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 244/660 (36%), Positives = 350/660 (53%), Gaps = 34/660 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  + YDA+SI +LEGLE VR RPGMYIG    K L+HL  E++DNA+DE +AGY + I 
Sbjct: 2   AKKNTYDAASISVLEGLEAVRKRPGMYIGSVSRKGLNHLIYEIVDNAVDEHLAGYCSHIR 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V L+ +G  TV DNGRGIPV+ H K    S   ++ TTLHAGGKFD+S Y+ SGGLHGVG
Sbjct: 62  VVLEKDGSCTVSDNGRGIPVDLHEK--GMSAERLVFTTLHAGGKFDDSAYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGTRITFRPDP 213
            SVVNALS  L + ++R   I    + RGIP   LE     +  K +   GT + F PDP
Sbjct: 120 SSVVNALSTYLDIKISRDGYIHHDHYERGIPTIELENGLLPRIGKTKE-TGTCVNFSPDP 178

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IF     F A  +       AYL+  +   +   +         +K  ++ P G+  ++
Sbjct: 179 EIFEK-TRFSATEVKSRLHETAYLNPALTIEFEDSR-----AETAQKVVYHEPEGIVGFI 232

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHES 332
           +   +++ ++       K E +G    +VE A  +  E  E    +CN I   EGGTH +
Sbjct: 233 RELNQSKEVLHKP-VFLKGESEGI---SVEAAFQFTNEFHENVLGFCNNIYNAEGGTHLT 288

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G +   T  +  YA       ++  +    D+      ++S+    P F GQTKTKL + 
Sbjct: 289 GFKTTFTSVMNTYARELGVLKEKDSNFTGADIRNGMTAVVSIKHPAPRFEGQTKTKLDNQ 348

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
           DA R     L +    Y  +N  E   +L    + ++ R    + +              
Sbjct: 349 DAARVTGKVLGEQLVLYFDRNLEELKAVLSCAEKAAKIRKTEERAKTNLLSKQKYSFDSN 408

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLA+C +      E+FIVEGDSAGGSAK AR+R+ QA+LP+RGKILNV  A  +K+  N
Sbjct: 409 GKLANCEKKDPSVCEIFIVEGDSAGGSAKTARDRNYQAILPIRGKILNVEKATIDKVLAN 468

Query: 511 QQIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
            +I  ++ A GC       + +    LRY+K+IIM DADVDGAHI++LLLT FY+ M +L
Sbjct: 469 AEIKTMINAFGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPEL 528

Query: 567 IEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           I + H+++  PPL+++  +     Y +D++  ++     K H  G   + R+KGLGEM A
Sbjct: 529 IYEGHVYIAMPPLYKVMPKKGAEEYLYDDKALERYR---KTHKSGTFTLQRYKGLGEMDA 585

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL ET ++   R L RVEI     +   T+     LMGT+   R  FI E A     + 
Sbjct: 586 QQLWETTLNPQTRILRRVEIEDARLASSVTE----VLMGTEVPPRKAFIYEHAQDA-QLD 640


>gi|300812413|ref|ZP_07092843.1| DNA topoisomerase IV, B subunit [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496580|gb|EFK31672.1| DNA topoisomerase IV, B subunit [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 643

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 236/649 (36%), Positives = 350/649 (53%), Gaps = 29/649 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
             + YD SSI+IL GLE VR RPGMYIG TD   L+ L  E++DN++DE +AG+   I V
Sbjct: 2   PKNTYDDSSIQILHGLEAVRKRPGMYIGSTDIHGLNQLVYEIVDNSVDEAMAGFGQEINV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  +TV D GRG+P   H     + T+E+ILT LHAGGKF    Y+ SGGLHGVG 
Sbjct: 62  TIHEDNSVTVQDFGRGMPTGMH--ASGRPTIEVILTVLHAGGKFTEQNYKTSGGLHGVGS 119

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           SVVNALS  + V V R    + ++F  G  P+  L      + K GT ITF+PDP I   
Sbjct: 120 SVVNALSSYMKVHVVRDGKAYEEEFQNGGHPIGTLRCLGATKEKTGTTITFKPDP-IIFS 178

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              ++   + +  +  A+L   VK   + ++           + F +  G+++++    E
Sbjct: 179 TTKYNYETIQERIRESAFLLKGVKFTLTDERTPK------HHDVFQYDDGIESFVSYLNE 232

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVA 337
            +  I       +  + G     +E+A  + +   E   S+ N + T +GG+HE G R  
Sbjct: 233 GKGTIGKVFC-FEGSQDG---MEIEFAGQYSDSYSENFVSFVNNVRTADGGSHEVGARSG 288

Query: 338 LTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
            TR    YA+      K+  ++   D       +LSV I E   EF GQTK KL +  A+
Sbjct: 289 FTRAFNDYAKKQGLLGKKDKNLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQAR 348

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLPG 451
             V++ + +   +YL++N   A  L++  +   + R   +K R+ +R      +K  L G
Sbjct: 349 SAVDSIVYEKLSYYLLENGEWAQDLVKKALRARDAREAAKKARDESRNGKKRHKKEVLSG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N+
Sbjct: 409 KLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQRAKLADIFKNE 468

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    ++++ ED  Y+K+IIMTDAD DGAHI  LLLTFFY+ M  +IE   
Sbjct: 469 EINTMIHTIGAGVGTEFKVEDSNYDKIIIMTDADDDGAHIQILLLTFFYRYMRPMIEAGK 528

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPL+RI++   ++YA  +E + +  ++  K       + RFKGLGEM A QL ET
Sbjct: 529 VYIALPPLYRISKKQTNLYAWTDEERDEDEKKVGK----GYALQRFKGLGEMNADQLWET 584

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            M+   R L+RV I+      +  +  +  LMG +A  R K+I+E   F
Sbjct: 585 TMNPESRMLIRVRIDD----AQLAERRVTTLMGDQASARRKWIEENVKF 629


>gi|238855703|ref|ZP_04646000.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii 269-3]
 gi|282932217|ref|ZP_06337664.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii 208-1]
 gi|238831688|gb|EEQ24028.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii 269-3]
 gi|281303667|gb|EFA95822.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii 208-1]
          Length = 647

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 233/654 (35%), Positives = 354/654 (54%), Gaps = 33/654 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + +++YD SSI+IL GLE VR RPGMYIG TD K ++ L  E++DN++DE +AGY   I 
Sbjct: 2   AKANSYDDSSIQILHGLEAVRKRPGMYIGSTDIKGINQLVYEIVDNSVDEAMAGYGKEIN 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +  +TV D GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG
Sbjct: 62  VTIHEDNSVTVQDFGRGMPTGMHE--SGIPTIEVIFTVLHAGGKFTEKNYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
            SVVNALS  L V V R    + ++F   G P+  L+   K  +K GT ITF+PD +   
Sbjct: 120 SSVVNALSSYLKVRVVRGGQAYEEEFHDGGKPIGTLKHLGKTNDKTGTTITFKPD-ERVF 178

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               +    + +  +  A+L   VK     ++           EEF +  G+K+++    
Sbjct: 179 STTKYKYETIEERIRESAFLLKGVKFTLKDERTPN------HYEEFLYTDGIKSFVSYLN 232

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRV 336
           E +     ++F  + ++       +E++  + +   E   S+ N + T +GG+HE G R 
Sbjct: 233 EGKDTFG-DVFYFEGKQDSI---EIEFSGQYNDGYSENFVSFVNNVRTIDGGSHEMGARS 288

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392
             TR    YA+      ++  +I   D       +LS+ + E   EF GQTK KL +  A
Sbjct: 289 GFTRAFNDYAKKQGLLKEKEKNIEGSDYREGLSAVLSIKVPEELLEFEGQTKGKLGTPQA 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLP 450
           +  V+  + +   +YL++N   A  L++   +  + R   +K R+ +R      +K  L 
Sbjct: 349 RSAVDALVYEKMSYYLLENGEFAQTLVKKAQKARDAREAAKKARDESRNGKKRRKKELLS 408

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + I  N
Sbjct: 409 GKLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIFKN 468

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    ++++ ED  Y+K+IIMTDAD DGAHI  LLLTFFY+ M  ++E  
Sbjct: 469 EEINTMIHTIGAGVGAEFKIEDANYDKIIIMTDADDDGAHIQILLLTFFYRYMRPMVEAG 528

Query: 571 HLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +++  PPL+R+ +G+    K  YA  +E  ++  +   K       + RFKGLGEM A 
Sbjct: 529 RVYIALPPLYRLQKGSGAKAKIEYAWTDEELERDEKAMGK----GYSLQRFKGLGEMNAD 584

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL +T M+ + R L+RV+I+         +  +  LMG K + R K+I++   F
Sbjct: 585 QLWQTTMNPDSRMLIRVKIDD----AALAERRVTTLMGDKVEVRRKWIEQNVKF 634


>gi|308069402|ref|YP_003871007.1| Topoisomerase IV subunit B [Paenibacillus polymyxa E681]
 gi|305858681|gb|ADM70469.1| Topoisomerase IV subunit B [Paenibacillus polymyxa E681]
          Length = 659

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 237/668 (35%), Positives = 352/668 (52%), Gaps = 39/668 (5%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
            +     QS +  Y A  I++LEGL  VR RPGMYIG T    LHHL  E++DNA+DE +
Sbjct: 8   SAGVSGTQSGASEYGADDIQVLEGLVAVRKRPGMYIGSTSSSGLHHLVWEIVDNAVDEHL 67

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           A + + I++++  +G +TV DNGRGIP   H       T +++ T LHAGGKF  S Y+ 
Sbjct: 68  AKFCSRIDITMHKDGSITVSDNGRGIPTGMHK--TGIPTPQVVFTILHAGGKFGGSGYKK 125

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR----------GIPLSPLEKKEKVR 200
           SGGLHGVG SV NALS+ L V + R   I  Q+F            G P + LE      
Sbjct: 126 SGGLHGVGASVTNALSEWLEVEIYRDGKIHRQRFEYWQDKKGVEHVGEPTTGLEVLGNTN 185

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
              G++ITF+PD ++F     F+   L +  Q  A+L+  ++     ++         + 
Sbjct: 186 K-TGSKITFKPDIRVFQAGIHFNYDTLAERLQEIAFLNSGLRIQLKDERS-------GKS 237

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCN 320
           +E+++ GG   ++    E + ++   I     ++       +++   + E    I S+ N
Sbjct: 238 DEYFYEGGASQFVAFLNEGKDVLHDVIHFNAEKEDIEVEIAIQYNAGYTET---IASFVN 294

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPE 378
           +I T  GGTHE+G + A TR +  YA       ++  ++  +DL    + ++SV + E E
Sbjct: 295 SIPTRGGGTHETGFKTAYTRVMNDYARKTVMLKEKDKNLEGNDLREGMMAVISVKMAEVE 354

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK--QR 436
           F GQTK +L S  A+ TV+  + +    +L +NP  A  L++  ++ S  R   RK    
Sbjct: 355 FVGQTKDQLGSASARSTVDAIVSEQMQRFLEENPQIAQTLIKKAVQASRAREAARKARDE 414

Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
             + K       L GKL+          ELFIVEGDSAGGSAKQ R+   QA+LPL+GK 
Sbjct: 415 MRSGKKRSESSNLNGKLSPAQSKDFTRNELFIVEGDSAGGSAKQGRDSKIQAILPLKGKP 474

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556
           +N   +    I  N +   +  A+G    +++  ED  Y K+IIMTDAD DGAHI  LLL
Sbjct: 475 MNPEKSKLADIMKNDEYRAITAAIGAGVGTEFSLEDSNYSKIIIMTDADTDGAHIQVLLL 534

Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKI 612
           TFFY+ M +LI+   +F+  PPL++IT+ +       YA  +E     L+EF ++     
Sbjct: 535 TFFYRYMKELIDAGRIFIAQPPLYKITRKSGKLETVRYAWTDEQLDNYLKEFGRN----F 590

Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
           E+ R+KGLGEM   QL ET M+ + RTLLRV+I          +  ++ LMG K D R +
Sbjct: 591 ELQRYKGLGEMNPDQLWETTMNPDSRTLLRVQIED----AAKAERRVSTLMGDKVDPRKR 646

Query: 673 FIQERASF 680
           +I E   F
Sbjct: 647 WIVENVDF 654


>gi|254456050|ref|ZP_05069479.1| DNA gyrase, B subunit [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083052|gb|EDZ60478.1| DNA gyrase, B subunit [Candidatus Pelagibacter sp. HTCC7211]
          Length = 686

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 278/698 (39%), Positives = 387/698 (55%), Gaps = 65/698 (9%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           +  + Y A SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I
Sbjct: 2   TNKNTYQADSIKVLKGLEAVRKRPGMYIGDTDDGTGLHHMVYEVVDNSIDEALAGHCKNI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V ++ +G +TV D+GRGIPV+ H K   KS  E+I+T LHAGGKFD+ +Y++SGGLHGV
Sbjct: 62  NVRINSDGTITVNDDGRGIPVDMH-KGEKKSAAEVIMTQLHAGGKFDHDSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS++L + + R       +F  G  ++PL+   K +N  GT+ITF P  +IF 
Sbjct: 121 GVSVVNALSEKLKLEINRDGKKHFIEFKNGEAIAPLKIVGKSKN-SGTQITFLPSKEIFS 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F A  L+K  +  A+L+  +K  ++      EK        F F GG+  ++    
Sbjct: 180 S-IKFSANILIKRMRELAFLNKGIKIIFTDASLKKEKVSE-----FKFDGGVLEFVNFLD 233

Query: 278 ENRSLIS--------SEIFTGKTEKKGTH-RGTVEWAIAWCEENPEITSYCNTILTDEGG 328
           E R  +          +    + +K       +++W  ++ E   +I  Y N I   +GG
Sbjct: 234 EKREKLQNKNGNDLFKKPIYIEGKKDNIELECSLKWNASYAE---DIFPYTNNIFQKDGG 290

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH  G R ALTR + KYA       K  ++I  DD+      +LS  I +P+F+ QTK K
Sbjct: 291 THLLGFRSALTRVVNKYANEHNLLKKNKLAISGDDIKEGLTCVLSTKIPDPKFSSQTKDK 350

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIR 445
           LVS + +  VE  + +    +  QNP  A  +L  VI+ +  R   RK RE   RK A+ 
Sbjct: 351 LVSSEVRMIVETVVNEKLSIWFDQNPSVAKIILAKVIQAAMARDVARKARENVRRKGALE 410

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA----- 500
              LPGKLADC      GTELFIVEGDSAGGSAKQ RNR+NQAVLPLRGKILN       
Sbjct: 411 LSGLPGKLADCQIGKQEGTELFIVEGDSAGGSAKQGRNRANQAVLPLRGKILNTYVEDLS 470

Query: 501 --------------SAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDAD 545
                         +    K+ ++ +I+ L+ ALG   ++Q  + +DLRY K+IIMTDAD
Sbjct: 471 VKKNGNGDASEQQRTKALSKMISSNEIVTLINALGLDPKTQEIDLKDLRYGKIIIMTDAD 530

Query: 546 VDGAHIASLLLTFF-YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL--- 601
           VDG+HI +LLLTFF  +    LIE  H++L  PPLF+I +GTK +Y  DE   +  +   
Sbjct: 531 VDGSHIRALLLTFFNNKPFNKLIENGHVYLAQPPLFKINKGTKGIYIKDELELENYIVKN 590

Query: 602 -EEFKKHGKG-------------KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINK 647
            +E KK  KG             K+ I RFKGLGEM   +L  T +D   R LL+V+ +K
Sbjct: 591 SKELKKIKKGSKEYIKELELEKSKMNIQRFKGLGEMNPEELWSTTLDPENRNLLQVQYSK 650

Query: 648 DLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           DL   +     I+ LMG     R  FI   A  + ++ 
Sbjct: 651 DLKKDQS---LIHTLMGNDVALRKDFIISNAINVQNLD 685


>gi|313884999|ref|ZP_07818751.1| DNA topoisomerase IV, B subunit [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619690|gb|EFR31127.1| DNA topoisomerase IV, B subunit [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 691

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 240/663 (36%), Positives = 356/663 (53%), Gaps = 37/663 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
             + NYD  SI+ILEGL+ VR RPGMYIG TD + LHHL  E++DN++DE ++GY + I+
Sbjct: 4   KTNANYDDQSIQILEGLDAVRKRPGMYIGSTDHRGLHHLVYEIVDNSVDEALSGYCDAIK 63

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V L  +G + V DNGRG+PV  H       T+++I T LHAGGKF    Y+ +GGLHGVG
Sbjct: 64  VELLKDGSIRVTDNGRGMPVGMH--ASGVPTIQVIFTVLHAGGKFGQGGYKSAGGLHGVG 121

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKE-KVRNKRGTRITFRPDPKIF 216
            SVVNALS  L V V R    +   F  G  P    +K   K +N+ GT++ F PD KIF
Sbjct: 122 ASVVNALSSWLTVQVKRDGYTYEMNFKDGGHPEGKFKKIPNKQKNESGTQVHFMPDAKIF 181

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
           G         +L+  +  A+L   +    + ++   E       E F++  GLK +++  
Sbjct: 182 GAN-SIKYETILERLRESAFLLKGLTIEITDERSDKE-------ETFHYEEGLKDFIKYL 233

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            E +   S   +   T         +E+A  + +     I S+ N + T  GGTHE+G +
Sbjct: 234 NEEKHTFSDTAYASGTVDD----FEIEFAFQYNDGYSETIMSFANNVRTSMGGTHETGFK 289

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLD 391
             LT+    Y   T    ++  ++   D+      +LS+ + E   +F GQTK KL +  
Sbjct: 290 TGLTKAFNDYGRRTGIIKEKDKNLDGSDIREGIAAVLSIRVPEAYLQFEGQTKEKLGTPK 349

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR--- 448
           A+  V+N + +    +L +N  +A +LL   ++    R   RK R+ +R  A R  +   
Sbjct: 350 ARSLVDNFVTEAVTLFLNENGPQAQELLRKAVKARNTREAARKARDASRSGAKRSQQERL 409

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           + GKL       A   EL++VEGDSAGGSAK  RN   QA+LPLRGK++N   A    I 
Sbjct: 410 ISGKLTKAQSKDAKMNELYLVEGDSAGGSAKLGRNPRYQAILPLRGKVINTEKASITDIM 469

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            N++I  ++  +G    + +  ED+ Y+KVIIMTDAD DGAHI  LLLTFFY+ M  L+E
Sbjct: 470 KNEEINTMIYTIGAGVGADFNIEDINYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLLE 529

Query: 569 QKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
              ++L  PPL++I++G+    K  YA   E  +   ++  K       + R+KGLGEM 
Sbjct: 530 AGKVYLAMPPLYKISKGSGKKEKIEYAWTNEELKVATQKIGK----GYILQRYKGLGEMN 585

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF-IDD 683
           A QL +T M+ + R L+RV +         ++  +  LMG K + R K+I++   F +D+
Sbjct: 586 ADQLWDTTMNPDTRLLIRVTVED----AALSERRLTTLMGAKVEPRRKWIEDNVKFTLDE 641

Query: 684 VGT 686
             T
Sbjct: 642 EDT 644


>gi|295693010|ref|YP_003601620.1| DNA topoisomerase iv, b subunit [Lactobacillus crispatus ST1]
 gi|295031116|emb|CBL50595.1| DNA topoisomerase IV, B subunit [Lactobacillus crispatus ST1]
          Length = 648

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 243/654 (37%), Positives = 356/654 (54%), Gaps = 33/654 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ YD SSI+IL GLE VR RPGMYIG TD   L+ L  E++DN++DE +AG+   I+
Sbjct: 2   AKANTYDDSSIQILHGLEAVRKRPGMYIGSTDIHGLNQLVYEIVDNSVDEAMAGFGKEID 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +  +TV D GRG+P   H     K T+E+ILT LHAGGKF    Y+ SGGLHGVG
Sbjct: 62  VTIHSDNSVTVRDFGRGMPTGMHK--SGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
            SVVNALS  + V V R    + ++F   G P+  L+   K +   GT ITF+PD  IF 
Sbjct: 120 SSVVNALSSYMKVRVVRDGKAYEEEFKDGGHPVGTLKCVGKTKEPTGTTITFKPDETIFS 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               +    + +  +  A+L   VK   + ++E          + F +  G+K++++   
Sbjct: 180 T-TKYKYETIQERIRESAFLLKGVKFVLTDEREPE------HHDVFQYDDGIKSFVKYLN 232

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRV 336
           E +    S++F  + ++ G     +E++  + +   E   S+ N + T +GGTHESG R 
Sbjct: 233 EGK-GTISDVFYFEGKQDG---MEIEFSGQYSDGYSENLVSFVNNVRTGDGGTHESGARS 288

Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392
             TR    YA+      K+  +I   D       +LSV I E   EF GQTK KL +  A
Sbjct: 289 GFTRAFNDYAKKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQA 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLP 450
           +  V++ + +   +YL++N   A +L++      + R   +K R+ +R      +K  L 
Sbjct: 349 RSAVDSLVYEKMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLS 408

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + I  N
Sbjct: 409 GKLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKN 468

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    +++  +D  Y+KVIIMTDAD DGAHI  LLLTFFY+ M  +IE  
Sbjct: 469 EEINTMIYTIGAGVGTEFNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEHG 528

Query: 571 HLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +++  PPL+R+ +G     +  YA  +E     L + +K       + RFKGLGEM A 
Sbjct: 529 KVYIALPPLYRLQKGRGKKTQVQYAWTDEE----LADDEKKMGRGYSLQRFKGLGEMNAE 584

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL  T MD   R L+RV+I+         +  +  LMG K   R K+I+E   F
Sbjct: 585 QLWATTMDPQSRMLIRVKIDD----AALAERRVTTLMGDKVAARRKWIEENVKF 634


>gi|313141108|ref|ZP_07803301.1| DNA gyrase subunit B [Bifidobacterium bifidum NCIMB 41171]
 gi|313133618|gb|EFR51235.1| DNA gyrase subunit B [Bifidobacterium bifidum NCIMB 41171]
          Length = 694

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 244/700 (34%), Positives = 364/700 (52%), Gaps = 28/700 (4%)

Query: 9   FSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGG 68
            +    +          + +  D     +  + D+YDAS +++LEGLE VR+RPGMYIG 
Sbjct: 1   MTASSAEQHDREVDEAIAQDELDDAQLDDTLSPDHYDASDLKVLEGLEAVRIRPGMYIGS 60

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T  + LHHL  E++DN++DE +AGYA  IEV++  +  + VVD+GRGIPV+  P     S
Sbjct: 61  TGPRGLHHLVYEIVDNSVDEALAGYATHIEVTILPDNGIRVVDDGRGIPVDEVP-GEGVS 119

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
            +E ++T LHAGGKF    Y +SGGLHGVGISVVNALS  + + V RQ   ++Q +    
Sbjct: 120 GVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHWTQTYVNQH 179

Query: 189 PLSPLEKKEKV--RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           P + L K   +      GT +TF PD  IF     +D   L    Q  A+L+  +K   +
Sbjct: 180 PTARLAKGAPMAEDESTGTSVTFWPDAAIFESTV-YDFETLRSRFQQMAFLNKGLKISLT 238

Query: 247 CDKEI---------AEKYGIPEKE--EFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-K 294
             +E           +    P+ +   + +  G+K Y+   +++R     E      E +
Sbjct: 239 DLREPDLAGDEVAGDDDSTEPKHQSVTYQYMNGIKDYVSYLVKSRKATPVEEDVIDFEAE 298

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
                 + E A+ W       + ++ NTI T EGGTHE G R ALT  + +YA       
Sbjct: 299 DLKIGISAEVAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLVNRYARDKNILK 358

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           ++  ++  DD+      ++SV +  P+F GQTKTKL + +A+  V+  + D    +   +
Sbjct: 359 EKDDNLSGDDVREGLTAVVSVKLTTPQFEGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAH 418

Query: 412 PIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVE 470
           P EA  +++  IE S  R+  +K RE  R+ +I     +P KL DC  +     ELFIVE
Sbjct: 419 PAEAKNIIQKAIEASRARIAAKKARENTRRKSIFESAGMPDKLKDCQSSNPEECELFIVE 478

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530
           GDSAGGSA Q RN   QA+LPLRGKILN   A  +++  +  I  L+ A+G     ++  
Sbjct: 479 GDSAGGSAIQGRNPETQAILPLRGKILNTERASIDRMMKSDTIESLITAVGGGYGEEFDV 538

Query: 531 EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ-GTKSV 589
             +RY KVIIM DADVDGAHIA+L LT F++ M  +I   ++++  PPL+R+        
Sbjct: 539 SKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKWTRGDHD 598

Query: 590 YAHDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646
           Y + +  + + L + K  G+       I R+KGLGEM   +L ET MD   R L ++ I 
Sbjct: 599 YVYTDRERDEKLAQGKAAGRQLPKGEGIQRYKGLGEMTYQELWETTMDPEHRILKQIHIE 658

Query: 647 KDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
                     ++ + LMG   + R  FIQ  A  +  +  
Sbjct: 659 D----AAAADETFSMLMGDDVEPRRLFIQRNAKDVRFIDA 694


>gi|78707365|gb|ABB46488.1| DNA gyrase subunit B [Acholeplasma pleciae]
          Length = 587

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 235/605 (38%), Positives = 357/605 (59%), Gaps = 20/605 (3%)

Query: 58  VRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIP 117
           V+ RPGMYIG T E+ LHHL  E++DN++DE + GYA+ I + +     + V DNGRGIP
Sbjct: 1   VKKRPGMYIGSTGERGLHHLVWEIVDNSIDEALGGYADEITIEILKGEIIRVTDNGRGIP 60

Query: 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN 177
           V+ HPK   +  +E ILTTLHAGGKFD  +Y++SGGLHGVG SVVN LS+   V + +  
Sbjct: 61  VDTHPK-TGRPAVETILTTLHAGGKFDKGSYKVSGGLHGVGASVVNGLSEWFVVEIHKDG 119

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            I+ QK+ RGIP   L+      ++ GT I+F+ DP IF +   ++   L    Q  A+L
Sbjct: 120 VIYEQKYERGIPAYDLKTLG-TTDRSGTVISFQSDPLIFKETVIYNYETLRTRIQQLAFL 178

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +K     D+     +   + E F++ GG+  Y++   + ++ I  +I   + E+   
Sbjct: 179 NKGLKLNLIDDR-----FEEVKTESFHYEGGIIEYVKFLNQAKTRIHPDIIYIEKEQDDI 233

Query: 298 HRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
              T+E A+ + +        + N I T EGG HE G ++ALTR I KYA+  + K+  S
Sbjct: 234 ---TIELALQFVDSYSPNLHSFTNNISTTEGGMHEDGFKMALTRVISKYADELKMKKDDS 290

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           I  +D       I+SV   EP+F GQTKTKL + + +        +  + +L++NP +A 
Sbjct: 291 ISGEDTREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAITSQITSEALERFLMENPAQAK 350

Query: 417 KLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            ++E V+  +  R+  RK ++   RK+ +  L    KLADC       +E++IVEGDSAG
Sbjct: 351 AIVEKVLLATRARVAARKAKDLTRRKSPLDALGFASKLADCRSKDPEKSEIYIVEGDSAG 410

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           GSAKQ R+   QA++PLRGK+LNV  A  +K+ +N++I++L+QA+G     ++     RY
Sbjct: 411 GSAKQGRDSEFQAIMPLRGKVLNVEKARLDKMLSNKEIVNLIQAMGTGISDEFDITKARY 470

Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEE 595
            K++IMTDADVDGAHI +LLLTF ++ M  LI+  +++   PPL++++ G  S YA+ E+
Sbjct: 471 HKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYKVSWGRNSEYAYTEQ 530

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
               IL++ +     K  I R+KGLGEM A QL +T MD  KRTLL++++   +    D 
Sbjct: 531 ELNIILKKIE----TKPNIQRYKGLGEMDAEQLWDTTMDPAKRTLLQIKLEDAI----DA 582

Query: 656 QDSIN 660
               +
Sbjct: 583 DQVFS 587


>gi|319776855|ref|YP_004136506.1| topoisomerase iv subunit b [Mycoplasma fermentans M64]
 gi|238809640|dbj|BAH69430.1| hypothetical protein [Mycoplasma fermentans PG18]
 gi|318037930|gb|ADV34129.1| Topoisomerase IV subunit B [Mycoplasma fermentans M64]
          Length = 637

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 241/648 (37%), Positives = 351/648 (54%), Gaps = 29/648 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             YD SSI+ L+GLE VR RPGMYIG TD   LHHL  E++DN++DE +AGYAN I V+L
Sbjct: 2   QKYDESSIQQLKGLEAVRKRPGMYIGSTDVNGLHHLIWEIVDNSIDEALAGYANEISVTL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             NG + V+DNGRGIPV   P    KS +E++ T LHAGGKF+   Y+ SGGLHGVG SV
Sbjct: 62  TKNGSVKVMDNGRGIPVGKTP--SGKSAVELVFTELHAGGKFNEGAYKTSGGLHGVGSSV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS +L VTV R   I+   F  G  +     +    NK GT + F P+ +IF   A 
Sbjct: 120 VNALSTKLIVTVYRDKKIYETIFENGDNIVQRTLEVGNTNKHGTMVEFWPNYEIFKR-AK 178

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F    + +  +   +L G ++  +  +    E         F +  GL  ++    ++++
Sbjct: 179 FSYETIAERLRESCFLIGGLRIHFKDEISDRETE-------FMYEDGLHAFVDFINDSKN 231

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
            +       +T++        ++  ++   N  + S+ N + T +GGTHE GL+ ALT+ 
Sbjct: 232 ALGDIKTFKETKRDIEVECGFQYTDSY---NETVLSFVNNVKTKDGGTHEIGLKSALTKT 288

Query: 342 IKKYAELTQNKRAIS-IISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVEN 398
             ++A   +  +  +    DD+      ILSV I E   EF  QTK KL + +A+  VE 
Sbjct: 289 FNEFALEEKALKGKNTFDGDDIREGLTIILSVKIPEKLLEFVSQTKEKLGTPEAKGVVEE 348

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA---IRKLRLPGKLAD 455
            +   F  ++ +N   A K+LE +   SE R   RK R   R T      K  L GKL  
Sbjct: 349 IVSKNFKIWINENKPLAKKILEKIKRASESRAAARKARAEARSTKNALKEKQILSGKLTP 408

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
               +    ELF+VEGDSAGGSAK  R+R  QA+LPLRGK++N   A   +I  N++I  
Sbjct: 409 AQSKVPAEKELFLVEGDSAGGSAKLGRDRKYQAILPLRGKVINTEKARLFEILKNEEIGT 468

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++  +G     ++  +  +Y KV+IMTDAD DGAHI  LLLTFF++ M  L+E   +++ 
Sbjct: 469 IINTIGAGVGDEFDLKKAQYGKVVIMTDADTDGAHIQILLLTFFFRHMRQLVENGMVYIA 528

Query: 576 SPPLFRITQ---GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
            PPLF++T      + +YA DE   +++L+          E+ R+KGLGEM A QL ET 
Sbjct: 529 LPPLFKLTSTRGKKEVLYAWDENELRELLQ-LPNFKNA--EVQRYKGLGEMNADQLWETT 585

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           M+   RTL++V+I          +  ++ LMG   + R ++I +   F
Sbjct: 586 MNPITRTLVQVKIED----AALAERRVSTLMGDNVEPRKEWINKNVEF 629


>gi|283797751|ref|ZP_06346904.1| DNA gyrase, B subunit [Clostridium sp. M62/1]
 gi|291074426|gb|EFE11790.1| DNA gyrase, B subunit [Clostridium sp. M62/1]
          Length = 639

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 244/657 (37%), Positives = 344/657 (52%), Gaps = 35/657 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            YDA SI +LEGLE VR RPGMYIGG   K L+HL  E++DN++DE +AG    I V+L+
Sbjct: 5   QYDADSITVLEGLEAVRKRPGMYIGGVGTKGLNHLIYEIVDNSVDEHLAGECTSIWVTLE 64

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G  TV DNGRGIPVE H K    S   ++L+TLHAGGKFDNS Y+ SGGLHGVG SVV
Sbjct: 65  ADGSCTVRDNGRGIPVEMHKK--GVSAERVVLSTLHAGGKFDNSAYKTSGGLHGVGSSVV 122

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPL-----SPLEKKEKVRNKRGTRITFRPDPKIFG 217
           NALS+ L + + +   I    + RGIP+       L      +   GT I F PD  IF 
Sbjct: 123 NALSEHLDIKIYKNGQIHHDAYERGIPVVELVDGLLPVIGNTKE-TGTCINFLPDDTIFE 181

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F A  L       AYL+  +   +   +   E+  +     +  P G+  Y++   
Sbjct: 182 K-TKFKAEWLKSRLHETAYLNPALTIYYENRRAGEEEKIV-----YSEPDGIIAYVKEIN 235

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRV 336
             ++ +       K   +G     VE AI + +   E    +CN I T EGGTH +G + 
Sbjct: 236 AGKTPVHEP-IYFKGSMEGI---EVEAAIQFVDTFEENILGFCNNIFTQEGGTHLAGFKT 291

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
             T  I  YA       ++  +    D       ++++   +P F GQTKTKL S DA +
Sbjct: 292 KFTMLINSYARELGILKEKDSNFTGADTRNGMTAVIAIKHPDPIFEGQTKTKLASADATK 351

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454
            V     +    +  +N      ++    + ++ R    K +      +       GKL+
Sbjct: 352 AVFTLTGEELQRFFDRNLETLKAVIGCAEKSAKIRKAEEKAKTNMLTKSRFSFDSNGKLS 411

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           +C    A   E+FIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +K+  N +I 
Sbjct: 412 NCESRDAEKCEIFIVEGDSAGGSAKMGRNRQYQAILPIRGKILNVEKASMDKVLANAEIK 471

Query: 515 DLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
            ++ A GC       + +    LRY K+I+MTDADVDG+HI +LLLTF Y+ M DLI + 
Sbjct: 472 TMINAFGCGFSEGYGNDFDISKLRYNKIILMTDADVDGSHIDTLLLTFLYRFMPDLITEG 531

Query: 571 HLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           H+++  PPLF++  +  +  Y +DE    K LE++KK   G   + R+KGLGEM A QL 
Sbjct: 532 HVYIAMPPLFKVIPKKGEEQYLYDE----KALEKYKKTHAGGFTLQRYKGLGEMDAEQLW 587

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           ET ++   R L +VEI     + + T+     LMG+    R +FI + A   + +  
Sbjct: 588 ETTLNPENRVLKQVEIEDARMASEITE----MLMGSDVPPRRQFIYDHAEEAE-IDA 639


>gi|313678724|ref|YP_004056464.1| DNA topoisomerase IV subunit B [Mycoplasma bovis PG45]
 gi|312950293|gb|ADR24888.1| DNA topoisomerase IV, B subunit [Mycoplasma bovis PG45]
          Length = 638

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 242/651 (37%), Positives = 354/651 (54%), Gaps = 32/651 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           ++ NYDASSI+ L+GLE VR RPGMYIG TD   LHHL  E++DN++DE +AG AN I V
Sbjct: 2   SNSNYDASSIQQLKGLEAVRKRPGMYIGSTDVNGLHHLIWEIVDNSIDEALAGEANEIAV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +G + V DNGRGIPV   P    KS +E++ T LHAGGKF+   Y+ SGGLHGVG 
Sbjct: 62  ILKNDGSVVVSDNGRGIPVGKTP--SGKSAVELVFTELHAGGKFNEGAYKTSGGLHGVGS 119

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L   V R   I+   F  G  +          NKRGT I F P+ +IF   
Sbjct: 120 SVVNALSNKLKCLVYRDKHIYETIFENGDNIVQKTHIIGSTNKRGTLIQFWPNYEIFKK- 178

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
           A F+   + +  +  ++L   +      +          + EEF +  G+K +++   ++
Sbjct: 179 AKFNFETIAERLRESSFLISNLSIKLLDE-------QSGKSEEFKYSNGIKAFVEFINDS 231

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVAL 338
           ++ + +        K   +   +E    + +  N  I S+ N + T +GGTHE GL+ A+
Sbjct: 232 KTALFNVYSF----KTVVNEIEIECGFQYTDGFNETILSFVNNVKTRDGGTHEIGLKSAI 287

Query: 339 TRGIKKYAELTQNKRAIS-IISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395
           T+    +A   +  +  +    +D+      +LSV I E   EF  QTK KL + +A+  
Sbjct: 288 TKTFNDFALDEKVLKGKNTFDGEDVREGLTVVLSVKIPEKFLEFVSQTKDKLGTPEAKSA 347

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA---IRKLRLPGK 452
           VE A+      ++ +N   A K+L+ +   S+ R   RK R   RKT      +  L GK
Sbjct: 348 VEEAVSKNLKTWITENKQIAKKILDKIKRASDSRESARKARLEARKTKSALKERQILSGK 407

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L           ELF+VEGDSAGGSAK  R+R  QA+LPLRGK++N   A    I  N++
Sbjct: 408 LTPAQTKNVKEKELFLVEGDSAGGSAKSGRDRKFQAILPLRGKVINTEKARLIDILKNEE 467

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++ A+G      +    ++Y+KVIIMTDAD DGAHI  LLLTFF++ M  LIE+  +
Sbjct: 468 INTIINAIGAGIGVDFDINKIQYDKVIIMTDADTDGAHIQILLLTFFFRHMRKLIEEGKV 527

Query: 573 FLISPPLFRITQG---TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           ++  PPLF+++      K +YA DE+  +++L+          E+ R+KGLGEM A QL 
Sbjct: 528 YIALPPLFKLSINKAQKKILYAWDEDELKELLQ----SKMKGAEVQRYKGLGEMNADQLW 583

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL++V I          +  ++ LMG   D R ++I +  +F
Sbjct: 584 ETTMNPKTRTLIQVRIQD----AALAERRVSTLMGDNVDSRKEWINKNVNF 630


>gi|326486756|gb|ADZ76421.1| DNA gyrase subunit B [Bacillus subtilis]
          Length = 588

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 243/604 (40%), Positives = 358/604 (59%), Gaps = 20/604 (3%)

Query: 67  GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           G T  K LHHL  E++DN++DE +AGY   I + ++ +  +TVVDNGRGIPV  H K   
Sbjct: 1   GSTSSKGLHHLVWEIVDNSIDEALAGYCTDINIQIEKDNSITVVDNGRGIPVGIHEKM-G 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           +  +E+I+T LHAGGKFD S Y++SGGLHGVG SVVNALS EL VTV R   I  Q + R
Sbjct: 60  RPAVEVIMTVLHAGGKFDGSGYKVSGGLHGVGASVVNALSTELDVTVHRDGKIHRQTYKR 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G+P++ LE   +  +  GT   F PDP+IF +   +D   L    +  A+L+  V     
Sbjct: 120 GVPVTDLEIIGET-DHTGTTTHFVPDPEIFSETTEYDYDLLANRVRELAFLTKGVNITIE 178

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +E  E+        +++ GG+K+Y++    ++ ++  E    + EK G    TVE A+
Sbjct: 179 DKREGQERKNE-----YHYEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGI---TVEVAL 230

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLM 363
            + +     I S+ N I T EGGTHE+G +  LTR I  YA      +    ++  DD+ 
Sbjct: 231 QYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLSGDDVR 290

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                I+S+   +P+F GQTKTKL + +A+   +       + ++++NP  A K+++  +
Sbjct: 291 EGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSTAMETFMLENPDAAKKIVDKGL 350

Query: 424 ERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
             +  R+  +K      RK+A+    LPGKLADCS      +EL+IVEGDSAGGSAKQ R
Sbjct: 351 MAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGR 410

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           +R  QA+LPLRGKILNV  A  +KI +N ++  ++ ALG      +  E  RY KV+IMT
Sbjct: 411 DRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVVIMT 470

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILE 602
           DADVDGAHI +LLLTFFY+ M  +IE  ++++  PPL+++ QG +  YA++++  +++L+
Sbjct: 471 DADVDGAHIRTLLLTFFYRYMRQIIENGYVYIAQPPLYKVQQGKRVEYAYNDKELEELLK 530

Query: 603 EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKL 662
              +  K    + R+KGLGEM A+QL ET MD + RTLL+V +   +    D  ++   L
Sbjct: 531 TLPQTPKPG--LQRYKGLGEMNATQLWETTMDPSSRTLLQVTLEDAM----DADETFEML 584

Query: 663 MGTK 666
           MG K
Sbjct: 585 MGDK 588


>gi|153813002|ref|ZP_01965670.1| hypothetical protein RUMOBE_03409 [Ruminococcus obeum ATCC 29174]
 gi|149830949|gb|EDM86039.1| hypothetical protein RUMOBE_03409 [Ruminococcus obeum ATCC 29174]
          Length = 660

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 246/660 (37%), Positives = 345/660 (52%), Gaps = 34/660 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  + YDA SI +LEGLE VR RPGMYIG    K L+HL  E++DNA+DE +AGY + I 
Sbjct: 21  AKKETYDAGSISVLEGLEAVRKRPGMYIGSVSRKGLNHLIYEIVDNAVDEHLAGYCSQIH 80

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V L+ +G  TV DNGRGIPV+ H K    S   ++ TTLHAGGKFDNS Y+ SGGLHGVG
Sbjct: 81  VVLEKDGSCTVTDNGRGIPVDMHEK--GMSAERLVFTTLHAGGKFDNSAYKTSGGLHGVG 138

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGTRITFRPDP 213
            SVVNALS  L + V+R   +    + RGIP   LE     K  + +   GT I F PDP
Sbjct: 139 SSVVNALSTYLDIKVSRDGYVHHDHYERGIPTIELENGLLPKLGRTKE-TGTCINFLPDP 197

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IF     F A  +       AYL+  +   +   +        P KEE++ P G+  Y+
Sbjct: 198 EIFEK-TRFSATDVKSRLHETAYLNPELTIIFEDLR-----GTEPVKEEYHEPEGIVGYI 251

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +    +   +       K E  G     VE A  +  E    +  +CN I   EGGTH +
Sbjct: 252 RDMNHSTEALHEP-VYLKGEADGIQ---VEVAFQYTNEFRENVLGFCNNIYNAEGGTHLT 307

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G +   T  +  YA        +  +    D+      ++S+    P F GQTKTKL + 
Sbjct: 308 GFKTTFTTVMNTYAREIGILKDKDPNFTGADIRNGMTAVVSIKHPAPRFEGQTKTKLDNQ 367

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
           DA +     L +    Y  +N      +L    + ++ R    + +              
Sbjct: 368 DAAKATGKVLGEQLVLYFDRNLETLKMILSCAEKAAKIRKTEERAKTNLLTKQKYSFDSN 427

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLA+C +      E+FIVEGDSAGGSAK ARNR+ QA+LP+RGKILNV  A  +K+  N
Sbjct: 428 GKLANCEKKDPSQCEIFIVEGDSAGGSAKTARNRNYQAILPIRGKILNVEKATIDKVLAN 487

Query: 511 QQIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
            +I  ++ A GC       + +    LRY+K++IM DADVDGAHI++LLLT FY+ M +L
Sbjct: 488 AEIKTMINAFGCGFSEGYGNDFDISKLRYDKIVIMADADVDGAHISTLLLTLFYRFMPEL 547

Query: 567 IEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           I + H+++  PPL++   +     Y +D++  +K     K H  G   + R+KGLGEM A
Sbjct: 548 IYEGHVYIAMPPLYKAMPKKGPEEYLYDDKALEKYR---KTHKPGSFTLQRYKGLGEMDA 604

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL ET ++   R + RVEI     +   T+     LMG++   R  FI E A+  + + 
Sbjct: 605 EQLWETTLNPETRRMKRVEIEDARLASSVTE----VLMGSEVPPRKAFIYEHAADAE-LD 659


>gi|160938079|ref|ZP_02085436.1| hypothetical protein CLOBOL_02973 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439073|gb|EDP16828.1| hypothetical protein CLOBOL_02973 [Clostridium bolteae ATCC
           BAA-613]
          Length = 639

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 252/659 (38%), Positives = 349/659 (52%), Gaps = 33/659 (5%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A + Y+A SI +LEGLE VR RPGMYIGG   K L+HL  E+IDNA+DE +AG+ + + V
Sbjct: 2   AKEQYNADSITVLEGLEAVRKRPGMYIGGVGSKGLNHLIYEIIDNAVDEHLAGFCSSVWV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L+ +G  TV DNGRGIPV  H K    S   I+L+TLHAGGKFDN  Y+ SGGLHGVG 
Sbjct: 62  TLEADGSCTVRDNGRGIPVGLHKK--GISAARIVLSTLHAGGKFDNDAYKTSGGLHGVGS 119

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGTRITFRPDPK 214
           SVVNALS  + + V R   I+  ++ +G P+  LE        K R   GT I F PD  
Sbjct: 120 SVVNALSAHMDLKVYRDGCIYHDEYEKGRPVIKLENGLLPVIGKTRE-TGTCINFLPDGD 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     F A  L       AYL+  +   +   +      G  EK  F+ P G+  Y++
Sbjct: 179 IFEK-TRFKAEWLKSRLHETAYLNPNLTLYYENKR-----PGEGEKVAFHEPEGIVAYVR 232

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGL 334
                ++ +   I+   T  K      +++   + E    I  +CN I T EGGTH +G 
Sbjct: 233 ELNSGKTPVHDPIYFKGTVDKVEVEAAIQFVDTFEE---NILGFCNNIFTQEGGTHLAGF 289

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           +   T  I  YA        +  +    D       +++V   +P F GQTKTKL S DA
Sbjct: 290 KTKFTALINSYAREIGILKDKDTNFTGADTRNGMTAVIAVKHPDPIFEGQTKTKLASADA 349

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
            + V     D    Y  +N      ++    + ++ R    K +      +       GK
Sbjct: 350 TKAVFTVTGDELQLYFDRNVEVLKGVIGCAEKSAKIRRAEEKAKTNMLTKSKFSFDSNGK 409

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LA+C    A   E+FIVEGDSAGGSAK ARNR  QA+LP+RGKILNV  A  +K+  N +
Sbjct: 410 LANCESRDASRCEIFIVEGDSAGGSAKTARNRQYQAILPIRGKILNVEKASMDKVLANAE 469

Query: 513 IMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           I  ++   GC       + +    LRY+K+I+MTDADVDG+HI +LLLTF Y+ M +LI 
Sbjct: 470 IKTMINTFGCGFSEGYGNDFDITKLRYDKIILMTDADVDGSHIDTLLLTFLYRFMPELIY 529

Query: 569 QKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
             H+++  PPLF++  +  +  Y +DE+     LE ++K   G   + R+KGLGEM A Q
Sbjct: 530 DGHVYIAMPPLFKVIPKRGEEQYLYDEKE----LERYRKTHTGDFTLQRYKGLGEMDAEQ 585

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           L ET +D  +R L RVEI     + + T+     LMGT+   R +FI E A   + +  
Sbjct: 586 LWETTLDPERRVLKRVEIEDARMATEITE----MLMGTEVGPRRQFIYEHADEAE-IDA 639


>gi|229816230|ref|ZP_04446540.1| hypothetical protein COLINT_03280 [Collinsella intestinalis DSM
           13280]
 gi|229808238|gb|EEP44030.1| hypothetical protein COLINT_03280 [Collinsella intestinalis DSM
           13280]
          Length = 674

 Score =  569 bits (1465), Expect = e-160,   Method: Composition-based stats.
 Identities = 254/686 (37%), Positives = 368/686 (53%), Gaps = 51/686 (7%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  + Y  S I++LEGLE VR+RPGMYIG T    LHHL  E++DN++DE +AG+ + IE
Sbjct: 2   ANENEYGGSEIKVLEGLEAVRVRPGMYIGSTSSTGLHHLVWEIVDNSVDEAMAGFCSSIE 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +  +TVVDNGRGIPV+ HP      TLE+++T LHAGGKFDNS Y++SGGLHGVG
Sbjct: 62  VTVHPDNSITVVDNGRGIPVDMHP-VKKIPTLEVVMTILHAGGKFDNSAYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS +++V V R   ++  +FSRG     + +         T +TF PD +IF  
Sbjct: 121 VSVVNALSKKMNVKVRRDGKVYEMEFSRGKTTQKMREIGTSSTTG-TTVTFWPDDEIFET 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              +D   L    Q  A+L+  +K     ++        P+ EEF + GG+  +++   E
Sbjct: 180 TV-YDFDILHDRLQQTAFLNKNLKIVLRDERS-----VEPQVEEFCYAGGIIDFVKFLNE 233

Query: 279 NRSLIS---SEIFTGKTEKKG---THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
            +++       I+     + G      G VE AI W       + S+ N I T EGG H 
Sbjct: 234 GKTVPDGLKDPIYLAGASEDGAPVEKTGEVEVAIQWNTSYSESVVSFANDIRTIEGGMHM 293

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G R ALT  I +YA       ++  ++  DD+      ++SV + +P+F GQTK KL S
Sbjct: 294 EGFRGALTSVINEYARKNGIIKEKEGNLTGDDIREGLTAVVSVKLADPQFEGQTKAKLGS 353

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLR 448
              +      + +    YL ++P +A ++++   + S+ R   RK RE  R+ + +    
Sbjct: 354 SFMRTLTRKIVSEGLAEYLEEHPKQAREIIKKAQQASKARNAARKAREATRRKSLLETAS 413

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS+  A  TELFIVEGDSAGGSAK  R R  QA+LPLRGKILNV   G  +  
Sbjct: 414 LPGKLADCSERNAELTELFIVEGDSAGGSAKDGRRRDIQAILPLRGKILNVERVGDHRAF 473

Query: 509 NNQQIMDLVQALGCRTRS------QYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
           +++ I  L+ A+GC   +       +     RY K+IIMTDADVDGAHI  LLLTFFY+ 
Sbjct: 474 SSETIQSLITAIGCGVTTGNGDGGDFDITKARYHKIIIMTDADVDGAHIRILLLTFFYKY 533

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAH----------------------DEEHKQKI 600
           M  LI+  ++++  PP+F I    K  Y +                      DE   ++ 
Sbjct: 534 MRPLIDAGYVYVACPPIFGIKVRNKIHYVYPNGRQAEDEILRDSIAALGLNPDESEDEQS 593

Query: 601 LEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660
             +  K  +    + R+KGLGEM   QL  T MD   R L RV I   +        ++ 
Sbjct: 594 NGKVTKK-RKGYTVQRYKGLGEMDPKQLASTTMDPKTRILQRVTIEDAIV----ADRAVR 648

Query: 661 KLMGTKADERFKFIQERASFIDDVGT 686
           +LMG++   R ++I++ A     +  
Sbjct: 649 ELMGSEVGYRREYIEKHAHDARFLDA 674


>gi|291459211|ref|ZP_06598601.1| DNA gyrase, B subunit [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291418465|gb|EFE92184.1| DNA gyrase, B subunit [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 642

 Score =  569 bits (1465), Expect = e-160,   Method: Composition-based stats.
 Identities = 251/661 (37%), Positives = 353/661 (53%), Gaps = 35/661 (5%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y+A SI +LEGLE VR RPGMYIG    K L+HL  E++DN++DE +AGY   I V+
Sbjct: 2   AEKYNADSITVLEGLEAVRRRPGMYIGSVGTKGLNHLIYEILDNSVDEHLAGYCTKIWVT 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           LD +G  TV DNGRGIPV  H K    S   +++TTLHAGGKF+ S+Y+ISGGLHGVG S
Sbjct: 62  LDSDGSCTVRDNGRGIPVGIHKK--GVSAERVVMTTLHAGGKFNASSYKISGGLHGVGSS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLS-----PLEKKEKVRNKRGTRITFRPDPKI 215
           VVNALS  + + V +   I+  ++SRGIP             K R  +GT I F PDP+I
Sbjct: 120 VVNALSSYMRIRVFQDGKIYEDEYSRGIPTKELSDGMPPVIGKTRE-KGTEIRFIPDPEI 178

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     F A  L+      AYL+  +   +   +   E        +++ P GL+ +++ 
Sbjct: 179 FEKT-QFRAEWLMSRLHETAYLNPELSIHYCDRRGEEEILA-----DYHEPEGLRAFVRD 232

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
              +     S     +   + T    +E  I + +   E    +CN I T EGGTH  G 
Sbjct: 233 LDRDCGEAVSPEIYFRGRAENT---ELECCIQFTDSFEENILGFCNDIYTQEGGTHIVGF 289

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           +   T+ I  YA       ++  +    D       ++++   EP F GQTKTKL SLDA
Sbjct: 290 KTKFTQLINGYARELGLLKEKDPNFTGADTRNGMTAVIALKYPEPIFEGQTKTKLASLDA 349

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
            + V     +   HY  +N      ++    + +  R +  K +      +       GK
Sbjct: 350 AKHVAAIAGEELSHYFDRNIEVVKAIIGCAEKSARIRRQEEKAKTNLLSKSKYSFDSNGK 409

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LA+C        E+FIVEGDSAGGSAK +R+R+ QA+LPLRGKILNV  A  +K+  N +
Sbjct: 410 LANCISREPENCEIFIVEGDSAGGSAKSSRDRNTQAILPLRGKILNVEKASIDKVLANAE 469

Query: 513 IMDLVQALGCR----TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           I  ++ A GC       + +    LRY K+I+MTDADVDG+HI +LLLTFFY+ M DLI 
Sbjct: 470 IKTMINAFGCGFSEGYGNDFDISKLRYHKIILMTDADVDGSHIDTLLLTFFYRFMPDLIR 529

Query: 569 QKHLFLISPPLFRIT---QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           + H+++  PPL+  T   +  K+ Y +D++   +  E   KH +G  EI RFKGLGEM  
Sbjct: 530 EGHVYVSMPPLYLATPSAKKEKAEYLYDDKALLRYRE---KHREGSYEIKRFKGLGEMDP 586

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           S+L ET ++   R L RVEI     + + T      LMGT+   R +FI E A     + 
Sbjct: 587 SELWETTLNPENRVLKRVEIEDARLASEVTG----MLMGTEVGPRREFIYEHAREAT-ID 641

Query: 686 T 686
            
Sbjct: 642 A 642


>gi|296111945|ref|YP_003622327.1| DNA topoisomerase IV subunit B [Leuconostoc kimchii IMSNU 11154]
 gi|295833477|gb|ADG41358.1| DNA topoisomerase IV subunit B [Leuconostoc kimchii IMSNU 11154]
          Length = 685

 Score =  568 bits (1464), Expect = e-160,   Method: Composition-based stats.
 Identities = 246/658 (37%), Positives = 361/658 (54%), Gaps = 33/658 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           ++YD+ SI+ILEGLE VR RPGMYIG TD + LHHL  E++DNA+DE + G+ N I V++
Sbjct: 5   NHYDSDSIKILEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALGGFGNDIRVTI 64

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             N  +TV D GRG+PV  H     K T E+ILT LHAGGKF    Y  SGGLHGVG SV
Sbjct: 65  HSNNSITVQDFGRGMPVGLHE--SGKPTPEVILTVLHAGGKFGQGGYATSGGLHGVGSSV 122

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VNALS+ L VT+ R    + + F+  G P+  L      + K GT +TF+PDP IF    
Sbjct: 123 VNALSESLQVTIVRDGHKWQEDFTNGGQPVGTLRDLGVTKEKSGTTVTFKPDPTIFSAVV 182

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +    L +  +  A+L   VK   + ++           E +++  GL+ ++    E++
Sbjct: 183 -YKYDTLSERLRESAFLMSGVKFSLTDER-----VKPARVETYHYEKGLEAFVGFLNEDK 236

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I     T + E+ G     V+ A  + +   E   S+ N + T +GGTHE G R A T
Sbjct: 237 GTIGPV-MTFEGEQSGI---VVDVAAQYNDGYSETLLSFVNNVRTQDGGTHEVGFRTAWT 292

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395
           +   +YA       ++  ++   D+      ++S+ + E   +F GQTK KL + +A+  
Sbjct: 293 KAFNEYARKVNLLKEKDKNLEGTDVREGLAAVISLRVPEQFLQFEGQTKDKLGTPEARGI 352

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGK 452
           V++ + +    +L++N      L+   I   E R   RK R+ +R    +  +   L GK
Sbjct: 353 VDSVVNETLGRFLMENGDFGQNLIRKAIRAREAREAARKARDESRTGKAKGQKERLLSGK 412

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LA      A   ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N++
Sbjct: 413 LAPAQSKNAERNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLVDILKNEE 472

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  L+ A+G    + ++  D  + K+IIMTDAD DGAHI +LLLTFFY+ M  LIE   +
Sbjct: 473 ISTLIYAIGGGVGNDFKVADTAFNKIIIMTDADDDGAHIQTLLLTFFYKYMRPLIEAGRV 532

Query: 573 FLISPPLFRITQGTKSV---YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           ++  PPL+R+   +K     +A   +     LE      + + E++RFKGLGEM A  L 
Sbjct: 533 YIALPPLYRVKYASKKFDDKFAWTNDE----LETITSQNEARYELTRFKGLGEMNAPLLW 588

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF-IDDVGT 686
           ET M+   RTL+RV+I+  +      +  +  LMG K + R ++I+    F +D+ G+
Sbjct: 589 ETTMNPETRTLIRVKIDDAV----LAEKRVTTLMGDKVEPRREWIEANVHFTLDEAGS 642


>gi|51473426|ref|YP_067183.1| DNA topoisomerase IV subunit B [Rickettsia typhi str. Wilmington]
 gi|81390212|sp|Q68XE1|PARE_RICTY RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|51459738|gb|AAU03701.1| DNA topoisomerase IV subunit B [Rickettsia typhi str. Wilmington]
          Length = 663

 Score =  568 bits (1464), Expect = e-160,   Method: Composition-based stats.
 Identities = 331/649 (51%), Positives = 442/649 (68%), Gaps = 7/649 (1%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
           ++    N+    NY A  I +L+GLEPVR RPGMYIGGTD  A+HHL SEV+DNAMDE +
Sbjct: 8   NNKEKKNKIIYTNYSAKDIEVLDGLEPVRKRPGMYIGGTDSNAMHHLVSEVLDNAMDEAV 67

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AG+A++I + +  +  +T+ DNGRGIP++NHPKFPNKS LE+ILTTLH+G KF N+ Y  
Sbjct: 68  AGFASIIMIKMHQDHSITIFDNGRGIPIDNHPKFPNKSALEVILTTLHSGSKFSNNVYHT 127

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           +GGLHGVGISVVNALS  L + V +Q  ++SQ +S+G  L+ L   E  +  RGT I F 
Sbjct: 128 AGGLHGVGISVVNALSKHLKIEVYQQGKLYSQSYSKGEKLTDLISTEVSKRLRGTSINFT 187

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PDP+IF +   F+  ++ ++ +SKAYL   V   W C+ E+     IP+K    FP GLK
Sbjct: 188 PDPEIFSETLHFNPKKIYEIARSKAYLYRGVSIEWECEVEVP--SDIPKKALINFPNGLK 245

Query: 271 TYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEENPEITSYCNTILTDEGGT 329
            YL +K+   +L+  EIF+G  E      +          + +  + SYCNT+ T +GGT
Sbjct: 246 DYLSSKISLDNLVIPEIFSGNIESTMDAIKLEWAICWQNNDTSAFMKSYCNTVPTPQGGT 305

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           HE GL+ A+ RG+K Y+E+  NK++ ++  +D+  +A  +LSVFI EP F GQTK KLVS
Sbjct: 306 HEQGLKSAILRGLKAYSEMIGNKKSANLTIEDIFETASVVLSVFIVEPSFQGQTKEKLVS 365

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
               + VEN ++D FDH+L  + + AT LLE VI  SE R  ++ +R ++RK A +KLRL
Sbjct: 366 NGVSKLVENIIKDHFDHFLSSDKVLATHLLEHVIAISEFRRNKKNERNISRKNATQKLRL 425

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC++  A GTELFIVEGDSAGGSAKQARNR  QAVLPL GK+LNVAS+  EKI N
Sbjct: 426 PGKLADCTRTSAEGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSTLEKIIN 485

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           NQ I DL  AL C +   Y++E+LRYEK+IIMTDADVDGAHIASLL+TFF+  M  L+++
Sbjct: 486 NQAIQDLEIALACGSLKNYKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPQLVKE 545

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
            HL+L  PPL+R+TQ  K  YA DEE K K+  +  K  K KIE+ RFKGLGEM+ +QLK
Sbjct: 546 GHLYLAKPPLYRLTQSNKIYYACDEEEKIKLTYKLSKTSKAKIEVGRFKGLGEMMPAQLK 605

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           ET M   KR+LL+V +      +++    ++ LMG K ++RF+FI E+A
Sbjct: 606 ETTMHPEKRSLLKVTLED----VQNVDKIVDDLMGKKPEKRFQFIYEQA 650


>gi|311742169|ref|ZP_07715979.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Aeromicrobium
           marinum DSM 15272]
 gi|311314662|gb|EFQ84569.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Aeromicrobium
           marinum DSM 15272]
          Length = 666

 Score =  568 bits (1464), Expect = e-160,   Method: Composition-based stats.
 Identities = 246/671 (36%), Positives = 358/671 (53%), Gaps = 23/671 (3%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
            S           YDAS+I++LEGL+ VR RPGMYIG T E+ LHHL  EV+DN++DE +
Sbjct: 2   TSTPDPAAPIESTYDASNIQVLEGLDAVRKRPGMYIGSTGERGLHHLVYEVVDNSVDEAL 61

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AG+A+ IEV+L  +G + VVD+GRGIPV+ HP       + ++LT+LHAGGKF    Y++
Sbjct: 62  AGHASHIEVTLLADGGVKVVDDGRGIPVDEHP-IEKIPAVTLVLTSLHAGGKFGGGGYKV 120

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS  L V V R    ++Q F+ G+P  PLE+ E          T  
Sbjct: 121 SGGLHGVGVSVVNALSTRLFVEVRRDGHRWTQSFTYGVPDQPLEQHEATTETG--TTTTF 178

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-----YGIPEKEEFYF 265
              +   +   +    L    +  A+L+  ++     ++E AE        +  +  F +
Sbjct: 179 YASEDIFETTEYSYETLKTRFREMAFLNKGLELVLIDEREHAEDADDTADEVERQVRFRY 238

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GGL  Y+Q                      T   ++E A+ W       + ++ NTI T
Sbjct: 239 DGGLVDYVQHINTGAKAAIHRDIISIERDDDTGGMSLELAMQWNASFSESVHTFANTINT 298

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            EGGTHE G R ALT  + ++AE      K+   +  DD+      I+SV + EP+F GQ
Sbjct: 299 HEGGTHEEGFRAALTTTVNRFAEANNLIKKKEDRLTGDDIREGLTAIISVKLAEPQFEGQ 358

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TKTKL + +A+  V+  L +    +L  NP E   ++   I+ +  R+  RK R++ R  
Sbjct: 359 TKTKLGNTEAKGFVQQVLNEQLGAWLEANPAEGKTIVRKSIDAASARMAARKARDLARNR 418

Query: 443 A--IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
              +    LPGKLADCS       E+FIVEG+SAGGSAK  R+   QA+LPLRGKILNV 
Sbjct: 419 KGFLGSGGLPGKLADCSSRNPEECEVFIVEGNSAGGSAKGGRDPRTQAILPLRGKILNVE 478

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
            A  +KI  N ++  ++ ALG      +    LRY K+++M DADVDG HI++LLLT  +
Sbjct: 479 KARIDKILQNAEVQAIISALGTGVHEDFDIAKLRYHKIVLMADADVDGQHISTLLLTLLF 538

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE-----I 614
           + M  LI+  H++L  PPL++I     +   A+ +  +  +L    + GK   +     I
Sbjct: 539 RFMKPLIDAGHVYLAQPPLYKIKWSNATADLAYTDRERDALLAAGAESGKRLPKEAGQAI 598

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
            R+KGLGEM  S+L +T MD + R L +V ++          +    LMG   ++R  FI
Sbjct: 599 QRYKGLGEMNDSELWDTTMDPDARVLRQVTLDD----AAMADEIFTILMGEDVEQRRSFI 654

Query: 675 QERASFIDDVG 685
           Q  A  +  + 
Sbjct: 655 QRNAKDVRFLD 665


>gi|302386253|ref|YP_003822075.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium saccharolyticum
           WM1]
 gi|302196881|gb|ADL04452.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium saccharolyticum
           WM1]
          Length = 639

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 246/659 (37%), Positives = 347/659 (52%), Gaps = 33/659 (5%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A   Y+A SI +LEGLE VR RPGMYIG    K L+HL  E++DNA+DE +AGY + I V
Sbjct: 2   AKTQYNADSITVLEGLEAVRKRPGMYIGSVGTKGLNHLIYEIVDNAVDEHLAGYCDQIWV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L+ +G  TV D GRGIPVE H K    S   ++L+TLHAGGKFDN  Y+ SGGLHGVG 
Sbjct: 62  TLEADGSCTVKDAGRGIPVEMHSK--GVSAERVVLSTLHAGGKFDNDAYKTSGGLHGVGS 119

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPL-----SPLEKKEKVRNKRGTRITFRPDPK 214
           SVVNALS  + + V +   I   ++ RGIP        L    K +   GT I F PD +
Sbjct: 120 SVVNALSAHMKIKVYKNGLIHYDEYERGIPTVELVDGLLPTLGKTKE-TGTEINFLPDGE 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     F A  L       AYL+  +K  +   ++  E     E   ++ P G+  Y++
Sbjct: 179 IFEK-TRFKADWLKSRLHETAYLNPSLKIIYRNKRQGEE-----ETVVYHEPDGIIAYVR 232

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGL 334
                +  +   ++   T  K      +++   + E    I  +CN I T EGGTH +G 
Sbjct: 233 ELNAGKEAVHDPVYFKGTMDKVEIEVALQFVDTFEE---NILGFCNNIFTQEGGTHLAGF 289

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           +   T+ I  YA       ++  +    D       +++V   +P F GQTKTKL S DA
Sbjct: 290 KTRFTQMINSYARELGILKEKDANFTGADTRNGLTAVVAVKHPDPIFEGQTKTKLASADA 349

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
            + V     D    Y  +N      ++    + ++ R    K +      +       GK
Sbjct: 350 TKAVFTVTGDELQRYFDRNLEVLKAVIGCAEKSAKIRKAEEKAKTNMLSKSRFSFDSNGK 409

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LA+C    A   E+FIVEGDSAGGSAK ARNR  QA+LP+RGKILNV  A  +K+  N +
Sbjct: 410 LANCESREAEKCEIFIVEGDSAGGSAKTARNRQYQAILPIRGKILNVEKASMDKVLANAE 469

Query: 513 IMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           I  ++   GC       + +    LRY K+I+MTDADVDG+HI +LLLTF Y+ M +LI 
Sbjct: 470 IKTMINTFGCGFSEGYGNDFDISKLRYHKIILMTDADVDGSHIDTLLLTFLYRFMPELIY 529

Query: 569 QKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
             H+F+  PPLF++  +  +  Y +DE+     LE +++   G+  + R+KGLGEM A Q
Sbjct: 530 NGHVFIAMPPLFKVIPKRGEEQYLYDEKE----LERYRRTHTGEFTLQRYKGLGEMDAEQ 585

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           L ET +D  +R L +VEI     + + T+     LMG+    R +FI E A   + +  
Sbjct: 586 LWETTLDPERRVLKQVEIEDARMASEITE----MLMGSDVLPRRQFIYEHADEAE-IDA 639


>gi|166030882|ref|ZP_02233711.1| hypothetical protein DORFOR_00562 [Dorea formicigenerans ATCC
           27755]
 gi|166029149|gb|EDR47906.1| hypothetical protein DORFOR_00562 [Dorea formicigenerans ATCC
           27755]
          Length = 640

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 243/660 (36%), Positives = 348/660 (52%), Gaps = 35/660 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ YDA SI +LEGLE VR RPGMYIG    K L+HL  E++DNA+DE +AG+   I 
Sbjct: 2   AKNNTYDADSITVLEGLEAVRKRPGMYIGSVSTKGLNHLIYEIVDNAVDEHLAGFCTEIH 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+L+ +G  T+ DNGRG+PV  H K    S   I+ TTLHAGGKFD+S Y+ SGGLHGVG
Sbjct: 62  VTLEKDGSATISDNGRGVPVGMHAK--GVSAERIVYTTLHAGGKFDDSAYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGTRITFRPDP 213
            SVVNALS  + V V+R   I   ++ RGIP+  LE        K R   GT++ F PD 
Sbjct: 120 SSVVNALSAYMDVQVSRDGYIHHDRYERGIPVVELEDGLLPTLGKTRK-TGTKVNFLPDD 178

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF     F A  +        YL+  +   +   ++       PE   ++ P G+  ++
Sbjct: 179 TIFEK-TKFKAEEVKSRMHETTYLNPNLTIIFEDLRD-----TEPEHIVYHEPDGILGFI 232

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHES 332
           +     +  +       K E  G     VE A  +  E +  I  +CN I   EGGTH +
Sbjct: 233 RELNAKKESVHEP-VYFKGEADGI---EVEVAFQYVNEFHENILGFCNNIYNSEGGTHLT 288

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G +   T  I +YA        +  +    D+      I+S+   +P F GQTKTKL + 
Sbjct: 289 GFKTTFTTVINQYARELGILKDKDPNFTGADVRNGMTAIVSIKHPDPRFEGQTKTKLDNP 348

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
           DA +     + +    +  +N      ++    + ++ R    K +              
Sbjct: 349 DASKATGKVVGEEIVRFFDRNLETLKNVIGCAEKAAKIRKTEEKAKTNLLTKQKYSFDSN 408

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLA+C    A   E+FIVEGDSAGGSAK AR+R  QA+LP+RGKILNV  A  +K+  N
Sbjct: 409 GKLANCESRDASKCEIFIVEGDSAGGSAKTARDRMYQAILPIRGKILNVEKASIDKVLAN 468

Query: 511 QQIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
            +I  ++ A GC       + +    LRY+K+IIM DADVDGAHI++LLLT FY+ M +L
Sbjct: 469 AEIKTMINAFGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPEL 528

Query: 567 IEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           I++ H+++  PPL++   +  +  Y +D+    K LE+++K   G   + R+KGLGEM A
Sbjct: 529 IQEGHVYIAMPPLYKAMPKKGEEEYLYDD----KALEKYRKTHDGPFTLQRYKGLGEMDA 584

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL ET ++   R L  VEI     +   T+     LMGT+   R  FI E A+  + + 
Sbjct: 585 DQLWETTLNPKTRLLKLVEIEDGRMASSVTE----MLMGTEVPPRRAFIYENATEAE-LD 639


>gi|167463189|ref|ZP_02328278.1| DNA topoisomerase IV subunit B [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322381894|ref|ZP_08055848.1| DNA topoisomerase IV subunit B-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321154282|gb|EFX46604.1| DNA topoisomerase IV subunit B-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 657

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 234/665 (35%), Positives = 355/665 (53%), Gaps = 42/665 (6%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
              + S +YDA +I++LEGL  VR RPGMYIG T    LHHL  E++DNA+DE +A + +
Sbjct: 10  NQTTLSSDYDADAIQVLEGLTAVRKRPGMYIGSTSSSGLHHLVWEIVDNAVDEHLAKHCS 69

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I+V++   G +TV DNGRGIP   H       T +++ T LHAGGKF    Y+ SGGLH
Sbjct: 70  KIDVTIHKEGSITVYDNGRGIPTGMHKM--GIPTPQVVFTILHAGGKFGGGGYKKSGGLH 127

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSR----------GIPLSPLEKKEKVRNKRGT 205
           GVG SV NALS+ L V + R   I+ Q+F            G P++ LE   K     GT
Sbjct: 128 GVGASVTNALSEWLEVEIFRDGQIYKQRFEYWVDEAGKEHVGEPVTSLEIIGKTSK-SGT 186

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           +ITF+PD ++F     F+   L +  Q  A+L+  ++     ++  +E       + F +
Sbjct: 187 KITFKPDVRVFKGGIQFNYDTLAERLQELAFLNSGLEIFLKDERTGSE-------DHFLY 239

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILT 324
            GG   +++   E + ++  ++   + EK       VE A+ +     E   S+ N+I T
Sbjct: 240 SGGASEFVRFLNEGKDVLH-DVIHFEAEKDDI---EVEIAMQYNIGYTETLVSFVNSIPT 295

Query: 325 DEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
             GGTHE+G + A TR + +YA       ++  ++   DL    + ++++ + + EF GQ
Sbjct: 296 RGGGTHETGFKTAFTRVMNEYARKNSILKEKDKNLEGTDLREGLMAVINIKMSDVEFVGQ 355

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK +L S  A+  V+  + +    +L +NP  A  +L+  ++ ++ R   RK RE  R  
Sbjct: 356 TKDQLGSATARSAVDAVVSEKMAVFLEENPQVAQMMLKKAVQSAKAREAARKAREEVRSG 415

Query: 443 AI---RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
                    L GKL           ELFIVEGDSAGGSAKQ R+   QA+LPL+GK +N 
Sbjct: 416 KKGRSESSNLNGKLTPAQSKDVTRNELFIVEGDSAGGSAKQGRDSKYQAILPLKGKPMNP 475

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
             A    I  N +   ++ A+G    S++   +  Y K+IIMTDAD DGAHI  LLLTFF
Sbjct: 476 EKAKLLDILKNDEYKAIISAIGAGVGSEFELSETNYNKIIIMTDADTDGAHIQVLLLTFF 535

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQ--GTKS--VYAHDEEHKQKILEEFKKHGKGKIEIS 615
           Y+ M  L++   +++  PPL++I++  G ++   YA  +E   K+ ++  K+     E+ 
Sbjct: 536 YRYMKPLVDAGKVYIAQPPLYKISKKSGKRTSVHYAWTDEELSKLTQKAGKN----FELQ 591

Query: 616 RFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675
           R+KGLGEM   QL ET M+   R LL+V+I          +  ++ LMG K D R ++I 
Sbjct: 592 RYKGLGEMNPEQLWETTMNPGTRILLQVQIED----AAKAERRVSTLMGDKVDPRKRWII 647

Query: 676 ERASF 680
           +   F
Sbjct: 648 DNVDF 652


>gi|283782558|ref|YP_003373312.1| DNA gyrase, B subunit [Gardnerella vaginalis 409-05]
 gi|297243224|ref|ZP_06927159.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Gardnerella vaginalis AMD]
 gi|298253027|ref|ZP_06976819.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Gardnerella vaginalis 5-1]
 gi|283442041|gb|ADB14507.1| DNA gyrase, B subunit [Gardnerella vaginalis 409-05]
 gi|296888758|gb|EFH27495.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Gardnerella vaginalis AMD]
 gi|297532422|gb|EFH71308.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Gardnerella vaginalis 5-1]
          Length = 691

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 246/698 (35%), Positives = 370/698 (53%), Gaps = 30/698 (4%)

Query: 12  LPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE 71
           +      S +   +  ++ D+    +  A ++YDAS +R+LEGLE VR+RPGMYIG T  
Sbjct: 1   MANTEDNSMDNAVEEHKLDDAQ-LDDSLAPEHYDASDLRVLEGLEAVRIRPGMYIGSTGP 59

Query: 72  KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLE 131
           + LHHL  E++DN++DE +AGYA+ IEV++  +  + VVD+GRGIPV+  P     S +E
Sbjct: 60  RGLHHLVYEIVDNSVDEALAGYASHIEVTILPDNAIRVVDDGRGIPVDEVP-GEGVSGVE 118

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
            ++T LHAGGKF    Y +SGGLHGVGISVVNALS  + + V RQ   ++Q +    P +
Sbjct: 119 TVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVEIEVRRQGFHWTQTYVDQHPTA 178

Query: 192 PLEKKEKV--RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
           PL K E +      GT +TF PD  IF     +D   L    Q  A+L+  +K   +  +
Sbjct: 179 PLAKGEPMAEGESTGTSVTFWPDGTIFETTV-YDFETLRSRFQQMAFLNKGLKISLTDLR 237

Query: 250 EIAEKYGI------------PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKG 296
           +  E                     + +  G+K Y+   +++R  +  E      E +  
Sbjct: 238 KPDEAGDEVAGDSESSSEEKHRSVSYQYEHGIKDYVDYLVKSRKAVPVEPDVIDFEAEDL 297

Query: 297 THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKR 353
               + E A+ W       + ++ NTI T EGGTHE G R ALT  + +YA       ++
Sbjct: 298 EIGISAEIAMQWTVAYSEAVHTFANTISTTEGGTHEEGFRAALTTLVNRYAREKNILKEK 357

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
             ++  DD+      ++SV +  P+F GQTKTKL + +A+  V+  + +    +   +P 
Sbjct: 358 DTNLSGDDVREGLTAVVSVKLTTPQFEGQTKTKLGNSEAKTFVQRVMTEKLGDWFDAHPN 417

Query: 414 EATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGD 472
           EA  +++  IE S  RL  +K RE  R+ +I     +P KL DC  +     ELFIVEGD
Sbjct: 418 EAKNIIQKAIEASRARLAAKKARENTRRKSIFETAGMPDKLKDCQSSNPEECELFIVEGD 477

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           SAGGSA Q R+   QA+LPLRGKILN   A  +++  ++ I  L+ A+G      +    
Sbjct: 478 SAGGSAIQGRDPITQAILPLRGKILNTERASIDRMMKSETIESLITAVGGGYGEDFDLSK 537

Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YA 591
           +RY KVIIM DADVDGAHIA+L LT F++ M  +I   ++++  PPL+R+     +  + 
Sbjct: 538 VRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKWSKGAHDFV 597

Query: 592 HDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648
           + +  + ++L E K  G+       I R+KGLGEM   +L ET MD   R L ++ I   
Sbjct: 598 YTDAERDRVLAEGKAAGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQIHIED- 656

Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
                   ++ + LMG + + R  FIQ  A     +  
Sbjct: 657 ---AARADETFSMLMGDEVEPRRLFIQRNAHDARFIDA 691


>gi|260589534|ref|ZP_05855447.1| DNA gyrase, B subunit [Blautia hansenii DSM 20583]
 gi|260540102|gb|EEX20671.1| DNA gyrase, B subunit [Blautia hansenii DSM 20583]
          Length = 640

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 247/661 (37%), Positives = 348/661 (52%), Gaps = 37/661 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  + YDASSI +LEGLE VR RPGMYIG    K L+HL  E++DNA+DE +AGY   I 
Sbjct: 2   AKKNTYDASSITVLEGLEAVRKRPGMYIGSVSRKGLNHLIYEIVDNAVDEHLAGYCKNIR 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+L+ +G  T+ D+GRGIPV  H K    S   ++ TTLHAGGKFD+S Y+ SGGLHGVG
Sbjct: 62  VTLEKDGSATIEDDGRGIPVGMHEK--GMSAERLVFTTLHAGGKFDDSVYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGTRITFRPDP 213
            SVVNALS  L + V+    I    + RGIP  PLE     K  + +   GT I F PD 
Sbjct: 120 SSVVNALSAFLDIKVSTGGYIHHDHYERGIPTIPLEDGLLPKLGRTK-TTGTCINFLPDD 178

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IF     F +  +       AYL+  +   +  ++        PE+  F+ P G+  ++
Sbjct: 179 EIFEK-TRFSSTEVKSRLHETAYLNPELTILFQDNR-----GTEPEEIVFHEPDGIVGFI 232

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   +    I       K E  G    TVE A  +  E    +  +CN I   EGGTH +
Sbjct: 233 KDLNKKSECIHEP-VYFKGESDGI---TVEVAFQYVNEFRENVLGFCNNIYNSEGGTHLT 288

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G +   T  +  YA       ++  +    D+      ++S+    P F GQTKTKL + 
Sbjct: 289 GFKTTFTSVMNTYARELGILKEKDSNFTGADVRNGMTAVVSIKHPAPRFEGQTKTKLDNQ 348

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
           DA +       +    Y  +N      +L    + ++ R    K +              
Sbjct: 349 DASKATGKVTGEEIVLYFDRNLDVLKSVLACAEKSAKIRKTEEKAKTNLLTKQKYSFDSN 408

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL++C +      E+FIVEGDSAGGSAK AR+RS QA+LP+RGKILNV  A  +K+  N
Sbjct: 409 GKLSNCEKRDPSLCEIFIVEGDSAGGSAKSARDRSFQAILPIRGKILNVEKATIDKVLAN 468

Query: 511 QQIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
            +I  ++ A GC       + +    LRY K+IIM DADVDGAHI++LLLT FY+ M +L
Sbjct: 469 AEIKTMINAFGCGFSEGYGNDFDITKLRYNKIIIMADADVDGAHISTLLLTLFYRFMPEL 528

Query: 567 IEQKHLFLISPPLFRI--TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
           I + H+++  PPL++   T+G +  Y +D+    K LE++++  KG   + R+KGLGEM 
Sbjct: 529 IYEGHVYIAMPPLYKAMPTKGKEE-YLYDD----KALEKYRRTHKGSFTLQRYKGLGEMD 583

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           A QL ET ++   R L  VEI     + + T+     LMGT+   R  FI E A     +
Sbjct: 584 AQQLWETTLNPETRMLRLVEIEDARMASEVTE----ILMGTEVPPRKAFIYEHARDA-QL 638

Query: 685 G 685
            
Sbjct: 639 D 639


>gi|170017459|ref|YP_001728378.1| DNA topoisomerase IV, B subunit [Leuconostoc citreum KM20]
 gi|169804316|gb|ACA82934.1| DNA topoisomerase IV, B subunit [Leuconostoc citreum KM20]
          Length = 687

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 245/664 (36%), Positives = 357/664 (53%), Gaps = 40/664 (6%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           ++YD+ SI+ILEGLE VR RPGMYIG TD + LHHL  E++DNA+DE + GY N I V++
Sbjct: 5   NHYDSDSIKILEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALGGYGNEIRVTI 64

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             N  +TV D GRG+PV  H     K T E+ILT LHAGGKF    Y  SGGLHGVG SV
Sbjct: 65  HDNNAITVQDFGRGMPVGMHE--SGKPTPEVILTVLHAGGKFGQGGYATSGGLHGVGSSV 122

Query: 162 VNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VNALS+ L VT+ R    + + F   G P+  L      + K GT +TF+PDP IF    
Sbjct: 123 VNALSESLQVTIIRDGHQWQEDFIDGGQPVGTLRDLGATKAKSGTTVTFKPDPSIFSATV 182

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +    L +  +  A+L   VK   + ++           E +++  GL++++    E++
Sbjct: 183 -YKYDTLSERLRESAFLMSGVKFILTDER-----VSPARVETYHYEKGLESFVNFLNEDK 236

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I     T + +++G     V+ A  + +   E   S+ N + T +GGTHE G R A T
Sbjct: 237 ETIGPV-MTFEGQQEG---LVVDVAAQYNDGYSETLLSFVNNVRTQDGGTHEVGFRTAWT 292

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395
           +   +YA       ++  ++   D+      ++S+ + E   +F GQTK KL + +A+  
Sbjct: 293 KAFNEYARKVNLLKEKDKNLEGSDVREGLSAVISLRVPEQFLQFEGQTKDKLGTPEARGI 352

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGK 452
           V+  + +    +L++N      ++   I   E R   RK R+ +R    +  +     GK
Sbjct: 353 VDAVVNETLGRFLMENGDFGQNIIRKAIRAREAREAARKARDESRTGKTKGQKDRLLSGK 412

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LA      A   ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N++
Sbjct: 413 LAPAQSKNAARNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLADILKNEE 472

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  L+ A+G      ++ ED  + K+IIMTDAD DGAHI +LLLTFFY+ M  LIE   +
Sbjct: 473 ISTLIYAIGGGVGPDFKVEDTAFNKIIIMTDADDDGAHIQTLLLTFFYKYMRPLIEAGRV 532

Query: 573 FLISPPLFRITQGTKSV---YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           ++  PPL+R+   +K     +A   +     LE        + E++RFKGLGEM A  L 
Sbjct: 533 YIALPPLYRVKYASKKFEDQFAWTNDE----LESITSQNDARYELTRFKGLGEMNAPLLW 588

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF--------I 681
           ET M+   RTL+RV+I+  +      +  +  LMG K + R  +I+    F        +
Sbjct: 589 ETTMNPETRTLIRVKIDDAV----LAEKRVTTLMGDKVEPRRDWIEANVHFTMDEAGSIL 644

Query: 682 DDVG 685
           D+V 
Sbjct: 645 DNVD 648


>gi|154506273|ref|ZP_02043011.1| hypothetical protein RUMGNA_03815 [Ruminococcus gnavus ATCC 29149]
 gi|153793412|gb|EDN75832.1| hypothetical protein RUMGNA_03815 [Ruminococcus gnavus ATCC 29149]
          Length = 650

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 244/663 (36%), Positives = 353/663 (53%), Gaps = 35/663 (5%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
            N   S+ YDA SI +LEGLE VR RPGMYIG    K L+HL  E++DNA+DE +AG+  
Sbjct: 9   ENMGKSNTYDADSISVLEGLEAVRKRPGMYIGSVSTKGLNHLIYEIVDNAVDEHLAGFCK 68

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V+L+ +G  TV D+GRG+PV  H K    S   ++ TTLHAGGKFD+S Y+ SGGLH
Sbjct: 69  NIHVTLEKDGSATVEDDGRGVPVGMHQK--GISAARLVYTTLHAGGKFDDSAYKTSGGLH 126

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGTRITFR 210
           GVG SVVNALS  + V ++R+  I   ++ RG+P+  LE        K R   GT++ F 
Sbjct: 127 GVGSSVVNALSVYMDVQISREGYIHHDRYERGVPVVELEDGLLPTIGKTRK-TGTKVNFL 185

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PD  IF     F A  +       AYL+  +   +   +         E  E++ P G+ 
Sbjct: 186 PDDTIFEK-TKFRAEEVKSRLHETAYLNPELTIVFDDKR-----PDSQEHIEYHEPDGIL 239

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGT 329
            +++   + + ++       K   +G     VE A  +  E +  +  +CN I   EGGT
Sbjct: 240 GFIRDLNQKKEVLHDP-IYFKGTAEGI---EVEAAFQYVNEFHENVLGFCNNIYNAEGGT 295

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G +   T  + +YA       ++  +    D+      I+S+   +P F GQTKTKL
Sbjct: 296 HLTGFKTTFTTVMNQYARELGILKEKDSNFTGADIRNGMTAIISIKHPDPRFEGQTKTKL 355

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL 447
            + DA +       D    Y  +N     K+L    + ++ R    K +           
Sbjct: 356 DNPDAAKATGKVTGDEIVLYFDRNVETLKKVLSCAEKAAKIRKTEEKAKTNLLTKQKYSF 415

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
              GKLA+C    A   E+FIVEGDSAGGSAK ARNR+ QA+LP+RGKILNV  A  +K+
Sbjct: 416 DSNGKLANCESRDAKKCEIFIVEGDSAGGSAKTARNRNYQAILPIRGKILNVEKASIDKV 475

Query: 508 RNNQQIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
             N +I  ++ A GC       + +    LRY+K+IIM DADVDGAHI++LLLT FY+ M
Sbjct: 476 LANAEIKTMINAFGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFYRFM 535

Query: 564 YDLIEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
            +LI + H+++  PPL+++  +  +  Y +D+    K LE++++   G   + R+KGLGE
Sbjct: 536 PELIYEGHVYIAMPPLYKVMPKKGEEEYLYDD----KALEKYRRTHDGGFTLQRYKGLGE 591

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           M A QL ET ++   R L  VEI     +   T+     LMGT+   R  FI E A+  +
Sbjct: 592 MDADQLWETTLNPETRILKLVEIEDARMASGVTE----MLMGTEVPPRRAFIYENATEAE 647

Query: 683 DVG 685
            + 
Sbjct: 648 -LD 649


>gi|302761372|ref|XP_002964108.1| hypothetical protein SELMODRAFT_405784 [Selaginella moellendorffii]
 gi|300167837|gb|EFJ34441.1| hypothetical protein SELMODRAFT_405784 [Selaginella moellendorffii]
          Length = 723

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 249/671 (37%), Positives = 378/671 (56%), Gaps = 31/671 (4%)

Query: 26  SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNA 85
           +  +  +PA +  S    YDA  I++LEGLEPVR RPGMYIG T  + LHHL  EV+DNA
Sbjct: 72  ATAVTQAPAPSPTS----YDAGKIQVLEGLEPVRRRPGMYIGSTGPRGLHHLIYEVLDNA 127

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DEV AG+A  ++V L  +G +++ DNGRGIP + HP    KSTLE +LT LHAGGKF  
Sbjct: 128 IDEVQAGFATQVDVVLHSDGSVSITDNGRGIPTDVHP-ATGKSTLETVLTVLHAGGKFGG 186

Query: 146 ST--YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE---KVR 200
               Y +SGGLHGVG+SVVNALS  L  TV R    + Q F RG  +  L  +    +  
Sbjct: 187 DESGYTVSGGLHGVGVSVVNALSKRLEATVWRNGQEYRQVFQRGKAVGSLTTRSLPRESS 246

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
           ++ GT + F PD ++F     FD   +    +  A+L+  V      +    +       
Sbjct: 247 SRTGTCVKFLPDDEVFTTTTAFDPNIVSSRLREVAFLNPEVTINLKEESATTD------- 299

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCN 320
           E F+F GGL  Y++   ++++ I   I     +   +   +++W       +  +  Y N
Sbjct: 300 EVFHFGGGLVEYVEWLNQDKTKIHDPISFSVEKDDISVNVSMQWCS--DAYSDTLLGYAN 357

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
           +I T +GGTH  GL++ LTR +      ++   ++  ++  +        ++SV + EPE
Sbjct: 358 SIRTADGGTHLDGLKMGLTRTLNILGRRSKAIREKGDNLSGEHAREGLTCVISVKVPEPE 417

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE- 437
           F GQTKT+L +++ ++ VE A+ +    YL   P     +L   ++  +     +K RE 
Sbjct: 418 FEGQTKTRLGNVEVRKIVEQAVIEQVTEYLEFRPDTLEAILSKALQAYKAAEAAKKAREL 477

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
           V RK  ++   LPGKLADC+ +    +E+FIVEG+SAGGSAKQ R+R+ QA+LPL+GKIL
Sbjct: 478 VRRKNVLKTSTLPGKLADCTSSDPRVSEIFIVEGESAGGSAKQGRDRAFQAILPLKGKIL 537

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLL 556
           N+       I  NQ+I DL+ ALG  TR +   +D LRY K+II+TDADVDGAHI +LLL
Sbjct: 538 NIERKDDAAIYKNQEIQDLIVALGLGTRGEEFHKDTLRYHKIIILTDADVDGAHIRTLLL 597

Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616
           TFF++    L +  ++++  PPL+++ +G  + Y + E   Q +L  F  +      I R
Sbjct: 598 TFFFRYQRALFDGGYIYVGVPPLYKVERGKHAHYCYSENELQGLLGTFAANAP--YNIQR 655

Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           FKGLGEM+  QL +T +D +KR L ++ +   +    +   + ++LMG K + R + I +
Sbjct: 656 FKGLGEMMPLQLWDTTLDPSKRMLKKLTLEDAV----EASFTFSRLMGDKVEPRKELILK 711

Query: 677 RASFID--DVG 685
            A+     ++ 
Sbjct: 712 SAAQFKQQNLD 722


>gi|72080449|ref|YP_287507.1| DNA gyrase subunit B [Mycoplasma hyopneumoniae 7448]
 gi|71913573|gb|AAZ53484.1| DNA gyrase subunit B [Mycoplasma hyopneumoniae 7448]
          Length = 639

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 246/649 (37%), Positives = 366/649 (56%), Gaps = 21/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S +Y A +I +LEGLE VR RPGMYIGGT    LHHL  E++DNA+DE +AG+A+ I+V+
Sbjct: 2   SKDYQAENIVVLEGLEAVRKRPGMYIGGTGINELHHLVWEIVDNAVDEALAGFASKIKVT 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  +++ D+GRGIP   HPK+   S  E++ T LHAGGKFD  +Y++SGGLHGVG S
Sbjct: 62  ILDDFKISIEDDGRGIPTGIHPKYE-ISAAEVVFTVLHAGGKFDGKSYKVSGGLHGVGAS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGD 218
           VVNALS EL V + R   ++ QKF  G   +           ++ GT+I F PD +I   
Sbjct: 121 VVNALSKELEVFIKRDGKLWYQKFINGGQKTADLSVISNLDSSQSGTKIIFSPDFEILEK 180

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    +    ++ AYL+  ++      +           + F F GG+  Y+    +
Sbjct: 181 N-SFQLLTIFNRLKNTAYLTRGIEFELIDKRS-------DFSQTFCFEGGISDYVDELSK 232

Query: 279 N-RSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLRV 336
           N + L ++ I++    +       VE+A+ +  E++ +I SY N I   EGG+HE+GL  
Sbjct: 233 NFKKLTNTIIYSENQYEHNQDTIKVEFALNYVQEDHSQIKSYTNNIHNPEGGSHENGLCD 292

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
            L R +  YA   +         +  D+    + I+S+    P F GQTK KL + + ++
Sbjct: 293 GLLRILNNYALSNKFIKSETDKFVKQDIKDGLIAIVSIKHTNPIFEGQTKAKLNNKEVRQ 352

Query: 395 TVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
            V  A  + F  YL +NP +A K++   ++ +   R  +  +  + RK+A     LPGKL
Sbjct: 353 FVNKAFSEVFQRYLAENPEDAKKIIARNLLAQKAARAAKSAREAIKRKSAFDIGTLPGKL 412

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC+   +   EL+IVEG+SAGGSAK  R+R  QA+LPLRGK++N      EK+  N++I
Sbjct: 413 ADCATKNSEIAELYIVEGNSAGGSAKMGRDRHFQAILPLRGKVINSQRFQLEKVLKNEEI 472

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
           + ++ A G     ++    +RY+K+IIMTDAD DG+HI SLLLTF ++    LIE   ++
Sbjct: 473 LSMITAFGTGVGPEFDISKIRYQKIIIMTDADSDGSHIRSLLLTFLFRYFKKLIEFGFVY 532

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           +  PPL++I+QG K  YA++E+ K+K L E  K    K  I R+KGLGEM   QL ET M
Sbjct: 533 IAIPPLYKISQGKKIFYAYNEKEKEKFLAEILKEN-SKFTIQRYKGLGEMNPEQLWETTM 591

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           D   R + +V+I    + L+      + LMGT    R  FI+E A +  
Sbjct: 592 DPQTRRMYQVQI----HDLEVVAQVFDSLMGTDVTMRKIFIEENAQYAK 636


>gi|256850406|ref|ZP_05555834.1| DNA topoisomerase IV subunitB [Lactobacillus crispatus MV-1A-US]
 gi|256712803|gb|EEU27796.1| DNA topoisomerase IV subunitB [Lactobacillus crispatus MV-1A-US]
          Length = 648

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 243/654 (37%), Positives = 355/654 (54%), Gaps = 33/654 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ YD SSI+IL GLE VR RPGMYIG TD   L+ L  E++DN++DE +AG+   I+
Sbjct: 2   AKANTYDDSSIQILHGLEAVRKRPGMYIGSTDIHGLNQLVYEIVDNSVDEAMAGFGKEID 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V +  +  +TV D GRG+P   H     K T+E+ILT LHAGGKF    Y+ SGGLHGVG
Sbjct: 62  VIIHSDNSVTVRDFGRGMPTGMHK--SGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
            SVVNALS  + V V R    + ++F   G P+  L+   K +   GT ITF+PD  IF 
Sbjct: 120 SSVVNALSSYMKVRVVRDGKAYEEEFKDGGHPVGTLKCVGKTKEPTGTTITFKPDETIFS 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               +    + +  +  A+L   VK   + ++E          + F +  G+K++++   
Sbjct: 180 T-TKYKYETIQERIREYAFLLKGVKFFLTDEREPE------HHDVFQYDDGIKSFVKYLN 232

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRV 336
           E +    S++F  + ++ G     +E++  + +   E   S+ N + T +GGTHESG R 
Sbjct: 233 EGK-GTISDVFYFEGKQDG---MEIEFSGQYSDGYSENLVSFVNNVRTGDGGTHESGARS 288

Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392
             TR    YA+      K+  +I   D       +LSV I E   EF GQTK KL +  A
Sbjct: 289 GFTRAFNDYAKKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQA 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLP 450
           +  V++ + +   +YL++N   A +L++      + R   +K R+ +R      +K  L 
Sbjct: 349 RSAVDSLVYEKMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLS 408

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + I  N
Sbjct: 409 GKLTPAQSQNPKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKN 468

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    +++  +D  Y+KVIIMTDAD DGAHI  LLLTFFY+ M  +IE  
Sbjct: 469 EEINTMIYTIGAGVGTEFNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEHG 528

Query: 571 HLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +++  PPL+R+ +G     +  YA  +E     L + +K       + RFKGLGEM A 
Sbjct: 529 KVYIALPPLYRLQKGRGKKTQVQYAWTDEE----LADDEKKMGRGYSLQRFKGLGEMNAE 584

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL  T MD   R L+RV+I+         +  +  LMG K   R K+I+E   F
Sbjct: 585 QLWATTMDPQSRMLIRVKIDD----AALAERRVTTLMGDKVAARRKWIEENVKF 634


>gi|197303041|ref|ZP_03168089.1| hypothetical protein RUMLAC_01768 [Ruminococcus lactaris ATCC
           29176]
 gi|197297896|gb|EDY32448.1| hypothetical protein RUMLAC_01768 [Ruminococcus lactaris ATCC
           29176]
          Length = 640

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 242/656 (36%), Positives = 353/656 (53%), Gaps = 35/656 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            YDA SI +LEGLE VR+RPGMYIG    K L+HL  E++DNA+DE +AG+   I V+L+
Sbjct: 6   TYDAGSIAVLEGLEAVRVRPGMYIGSVSTKGLNHLVYEIVDNAVDEHLAGFCTEIHVTLE 65

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G  TV DNGRG+PV+ H K    S   ++ TTLHAGGKFD+S Y+ SGGLHGVG SVV
Sbjct: 66  KDGSATVSDNGRGVPVDMHQK--GISAARLVYTTLHAGGKFDDSAYKTSGGLHGVGSSVV 123

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGTRITFRPDPKIFG 217
           NALS  + V ++R   I   ++ RGIP+  LE     K  K R   GT + F PD  IF 
Sbjct: 124 NALSAYMDVKISRDGYIHHDRYERGIPVIELEDGLLPKIGKTRK-TGTTVNFLPDDTIFE 182

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F A  +       AYL+ ++   +   ++ +E+        ++ P G+  ++    
Sbjct: 183 K-TRFKAEEIKSRLHETAYLNPKLTIFFEDKRQGSEEKIE-----YHEPEGIIGFITDMN 236

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLRV 336
             + ++       K E  G     VE A+ +  E +  +  +CN I   EGGTH +G + 
Sbjct: 237 HKKEVLHEP-IYFKGEADGI---GVEVALQYVNEFHENVVGFCNNIYNAEGGTHLTGFKT 292

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
             T  + +YA       ++  +    D+      I+S+   +P F GQTKTKL + DA +
Sbjct: 293 TFTTVMNQYARELGVLKEKDANFTGADIRNGMTAIISIKHPDPRFEGQTKTKLDNPDAAK 352

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454
            V     +    +  +N      +L    + ++ R    + +              GKLA
Sbjct: 353 AVGKVTGEEIVRFFDRNIETLKTVLSSAEKAAKIRKTEERAKTNLLTKQKYSFDSNGKLA 412

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           +C        E+FIVEGDSAGGSAK AR+R+ QA+LP+RGKILNV  A  +K+  N +I 
Sbjct: 413 NCESRDPKKCEIFIVEGDSAGGSAKTARDRNYQAILPIRGKILNVEKASIDKVLANAEIK 472

Query: 515 DLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
            ++ A GC       + +    LRY+K+IIM DADVDGAHI++LLLT FY+ M +LI + 
Sbjct: 473 TMINAFGCGFSEGYGNDFDISKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIYEG 532

Query: 571 HLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           H+++  PPL++   +  +  Y +D+    K LE+++K+  G   + R+KGLGEM A QL 
Sbjct: 533 HVYIAMPPLYKAMPKKGEEEYLYDD----KALEKYRKNHTGPFTLQRYKGLGEMDAEQLW 588

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           ET +D  +R L  VEI     +   T+     LMGT+   R  FI E A+  + + 
Sbjct: 589 ETTLDPERRLLKLVEIEDARMASSVTE----MLMGTEVPPRKAFIYENATEAE-LD 639


>gi|227878639|ref|ZP_03996556.1| DNA topoisomerase IV subunit B [Lactobacillus crispatus JV-V01]
 gi|256843237|ref|ZP_05548725.1| DNA topoisomerase IV, B subunit [Lactobacillus crispatus 125-2-CHN]
 gi|262046445|ref|ZP_06019407.1| DNA topoisomerase IV, B subunit [Lactobacillus crispatus MV-3A-US]
 gi|293380597|ref|ZP_06626652.1| DNA topoisomerase IV, B subunit [Lactobacillus crispatus 214-1]
 gi|312977468|ref|ZP_07789216.1| DNA topoisomerase IV, B subunit [Lactobacillus crispatus CTV-05]
 gi|227861759|gb|EEJ69361.1| DNA topoisomerase IV subunit B [Lactobacillus crispatus JV-V01]
 gi|256614657|gb|EEU19858.1| DNA topoisomerase IV, B subunit [Lactobacillus crispatus 125-2-CHN]
 gi|260573316|gb|EEX29874.1| DNA topoisomerase IV, B subunit [Lactobacillus crispatus MV-3A-US]
 gi|290922844|gb|EFD99791.1| DNA topoisomerase IV, B subunit [Lactobacillus crispatus 214-1]
 gi|310895899|gb|EFQ44965.1| DNA topoisomerase IV, B subunit [Lactobacillus crispatus CTV-05]
          Length = 648

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 243/654 (37%), Positives = 355/654 (54%), Gaps = 33/654 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ YD SSI+IL GLE VR RPGMYIG TD   L+ L  E++DN++DE +AG+   I+
Sbjct: 2   AKANTYDDSSIQILHGLEAVRKRPGMYIGSTDIHGLNQLVYEIVDNSVDEAMAGFGKEID 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V +  +  +TV D GRG+P   H     K T+E+ILT LHAGGKF    Y+ SGGLHGVG
Sbjct: 62  VIIHSDNSVTVRDFGRGMPTGMHK--SGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
            SVVNALS  + V V R    + ++F   G P+  L+   K +   GT ITF+PD  IF 
Sbjct: 120 SSVVNALSSYMKVRVVRDGKAYEEEFKDGGHPVGTLKCVGKTKEPTGTTITFKPDETIFS 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               +    + +  +  A+L   VK   + ++E          + F +  G+K++++   
Sbjct: 180 T-TKYKYETIQERIREYAFLLKGVKFFLTDEREPE------HHDVFQYDDGIKSFVKYLN 232

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRV 336
           E +    S++F  + ++ G     +E++  + +   E   S+ N + T +GGTHESG R 
Sbjct: 233 EGK-GTISDVFYFEGKQDG---MEIEFSGQYSDGYSENLVSFVNNVRTGDGGTHESGARS 288

Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392
             TR    YA+      K+  +I   D       +LSV I E   EF GQTK KL +  A
Sbjct: 289 GFTRAFNDYAKKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQA 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLP 450
           +  V++ + +   +YL++N   A +L++      + R   +K R+ +R      +K  L 
Sbjct: 349 RSAVDSLVYEKMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLS 408

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + I  N
Sbjct: 409 GKLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKN 468

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    +++  +D  Y+KVIIMTDAD DGAHI  LLLTFFY+ M  +IE  
Sbjct: 469 EEINTMIYTIGAGVGTEFNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEHG 528

Query: 571 HLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +++  PPL+R+ +G     +  YA  +E     L + +K       + RFKGLGEM A 
Sbjct: 529 KVYIALPPLYRLQKGRGKKTQVQYAWTDEE----LADDEKKMGRGYSLQRFKGLGEMNAE 584

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL  T MD   R L+RV+I+         +  +  LMG K   R K+I+E   F
Sbjct: 585 QLWATTMDPQSRMLIRVKIDD----AALAERRVTTLMGDKVAARRKWIEENVKF 634


>gi|163838775|ref|YP_001623180.1| DNA gyrase subunit B [Renibacterium salmoninarum ATCC 33209]
 gi|162952251|gb|ABY21766.1| DNA gyrase subunit B [Renibacterium salmoninarum ATCC 33209]
          Length = 702

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 246/710 (34%), Positives = 375/710 (52%), Gaps = 34/710 (4%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           M+  + +           +++    +  +P S     +S   +YDAS I +LEGLE VR 
Sbjct: 1   MSTSNPENPQNPDASVDEAAQPSPSAKAVPTSHVSPEES---HYDASDITVLEGLEAVRK 57

Query: 61  RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           RPGMYIG T  + LHHL +EV+DN++DE +AGY   IE++L  +G + V D+GRGIPV+ 
Sbjct: 58  RPGMYIGSTGPRGLHHLITEVVDNSVDEALAGYCTHIEITLQADGGVRVDDDGRGIPVDM 117

Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
           HP    K T+E+++T LHAGGKF    Y +SGGLHGVGISVVNALS  +  TV RQ   +
Sbjct: 118 HP-TEGKPTVEVVMTVLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVETTVKRQGFAW 176

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
            Q F+ G       +K +  ++ GT   F  D  IF     +D   L    Q  ++L+  
Sbjct: 177 HQSFADGGQPVGTLRKGEPTDETGTTQLFYADGSIFES-TEYDFETLRARFQQYSFLNKG 235

Query: 241 VKTCWSCDK-------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENR--SLISS 285
           ++   + ++             E AE      +  + +  GL  Y+     ++   +I+ 
Sbjct: 236 LRITLTDERVTESVEEEIASDAESAEDTPAHRQVIYQYDNGLIDYVTYLNSSKKVEVINP 295

Query: 286 EIFTGKTEKKG--THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
           ++   ++E K        +E A+ W       + +Y NTI T EGGTHE G R A+T  I
Sbjct: 296 DVIAFESENKDLNGRSIALELAMQWTTAYSESVHTYANTINTHEGGTHEEGFRAAMTSLI 355

Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
            +YA       ++  ++  DD+      ++SV + EP+F GQTKTKL + +A+  V+  +
Sbjct: 356 NRYAREKNIIKEKDENLTGDDIREGLTAVISVKLSEPQFEGQTKTKLGNSEAKGFVQRVV 415

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQN 459
            D    +L +NP  A  ++   I+ ++ RL  RK RE  R+   +    +PGKL DC   
Sbjct: 416 TDELGDWLERNPGPARDVIRKSIQAAQARLAARKARESTRRKGLLESGGMPGKLKDCQSK 475

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
               +E+++VEGDSAGGSA + RN   QA+LPLRGKILNV  A  ++   N ++  ++ A
Sbjct: 476 DPSKSEIYLVEGDSAGGSAVRGRNPETQAILPLRGKILNVERARLDRALGNAEVQAMITA 535

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
            G      +  E  RY K+++M DADVDG HI +LLLT  ++ M  L+E  +++L  PPL
Sbjct: 536 FGAGIGEDFDVEKARYHKIVLMADADVDGQHITTLLLTLLFRYMRPLVEHGYVYLAQPPL 595

Query: 580 FRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDA 635
           +RI        Y + ++ + + L +    G    +   I R+KGLGEM  ++L ET MD 
Sbjct: 596 YRIKWSNAPHDYVYSDKERDEALTKGAAAGHRIPKDNGIQRYKGLGEMDYTELWETTMDP 655

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           + RTLL+V ++           + + LMG   + R  FIQ  A  +  + 
Sbjct: 656 DHRTLLQVTMDD----AASADQTFSILMGEDVESRRHFIQTNAKDVRFLD 701


>gi|54020117|ref|YP_115783.1| DNA gyrase subunit B [Mycoplasma hyopneumoniae 232]
 gi|53987290|gb|AAV27491.1| DNA gyrase subunit B [Mycoplasma hyopneumoniae 232]
          Length = 639

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 247/649 (38%), Positives = 366/649 (56%), Gaps = 21/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S +Y A +I +LEGLE VR RPGMYIGGT    LHHL  E++DNA+DE +AG+A+ I+V+
Sbjct: 2   SKDYQAENIVVLEGLEAVRKRPGMYIGGTGINELHHLVWEIVDNAVDEALAGFASKIKVT 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  +++ D+GRGIP   HPK+   S  E++ T LHAGGKFD  +Y++SGGLHGVG S
Sbjct: 62  ILDDFKISIEDDGRGIPTGIHPKYE-ISAAEVVFTVLHAGGKFDGKSYKVSGGLHGVGAS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGD 218
           VVNALS EL V + R   ++ QKF  G   +           ++ GT+I F PD +I   
Sbjct: 121 VVNALSKELEVFIKRDGKLWYQKFINGGQKTADLSVISNLDSSQSGTKIIFSPDFEILEK 180

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    +    ++ AYL+ R++      +           + F F GG+  Y++   +
Sbjct: 181 N-SFQLLTIFNRLKNTAYLTRRIQFELIDKRS-------DFSQTFCFEGGISDYVEELSK 232

Query: 279 N-RSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLRV 336
           N + L ++ I++    +       VE+A+ +  E++ +I SY N I   EGG+HE+GL  
Sbjct: 233 NFKKLTNTIIYSENQYEHNQDTIKVEFALNYVQEDHSQIKSYTNNIHNPEGGSHENGLCD 292

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
            L R +  YA   +         +  D+    + I+S+    P F GQTK KL + + ++
Sbjct: 293 GLLRILNNYALSNKFIKSETDKFVKQDIKDGLIAIVSIKHTNPIFEGQTKAKLNNKEVRQ 352

Query: 395 TVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
            V  A  + F  YL +NP +A K++   ++ +   R  +  +  + RK+A     LPGKL
Sbjct: 353 FVNKAFSEVFQRYLAENPEDAKKIIARNLLAQKAARAAKSAREAIKRKSAFDIGTLPGKL 412

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC    +   EL+IVEG+SAGGSAK  R+R  QA+LPLRGK++N      EK+  N++I
Sbjct: 413 ADCGTKNSEIAELYIVEGNSAGGSAKMGRDRHFQAILPLRGKVINSQRFQLEKVLKNEEI 472

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
           + ++ A G     ++    +RY+K+IIMTDAD DG+HI SLLLTF ++    LIE   ++
Sbjct: 473 LSMITAFGTGVGPEFDISKIRYQKIIIMTDADSDGSHIRSLLLTFLFRYFKKLIEFGFVY 532

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           +  PPL++I+QG K  YA++E  K+K L E  K    K  I R+KGLGEM   QL ET M
Sbjct: 533 IAIPPLYKISQGKKIFYAYNEREKEKFLAEILKEN-SKFTIQRYKGLGEMNPEQLWETTM 591

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           D   R + +V+I    + L+      + LMGT    R  FI+E A +  
Sbjct: 592 DPQTRRMYQVQI----HDLEVVAQVFDSLMGTDVTMRKIFIEENAQYAK 636


>gi|210634747|ref|ZP_03298275.1| hypothetical protein COLSTE_02202 [Collinsella stercoris DSM 13279]
 gi|210158687|gb|EEA89658.1| hypothetical protein COLSTE_02202 [Collinsella stercoris DSM 13279]
          Length = 674

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 252/685 (36%), Positives = 363/685 (52%), Gaps = 49/685 (7%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  + Y  + I++LEGLE VR+RPGMYIG T    LHHL  E++DN++DE +AG+   IE
Sbjct: 2   ANENEYGGNEIKVLEGLEAVRVRPGMYIGSTSSTGLHHLVWEIVDNSVDEAMAGFCTKIE 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +  +TVVDNGRGIPV+ HP      TLE+++T LHAGGKFDNS Y++SGGLHGVG
Sbjct: 62  VTVHPDNSITVVDNGRGIPVDEHP-VKKIPTLEVVMTILHAGGKFDNSAYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS +++V V R   I+  +FSRG     + +         T  TF PD +IF  
Sbjct: 121 VSVVNALSKKMNVQVRRDGHIYEMEFSRGKTTQKMREIGTSETTG-TTTTFWPDEEIFET 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              +D   L    Q  A+L+  +K     ++        P  EEF + GG+  +++   E
Sbjct: 180 TV-YDYDILRTRLQQTAFLNKNLKIVLKDERTAD-----PLVEEFCYAGGIVDFVKFLNE 233

Query: 279 NRSLI----SSEIFTGKTE--KKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHE 331
            +++          +G++E        G VE AI W     E   S+ N I T EGG H 
Sbjct: 234 GKTVPEGLKHPIYLSGESEPGAPVEKIGEVEVAIQWNTSYSENVVSFANDIRTIEGGMHM 293

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G R ALT  I  YA       ++  ++  DD+      ++SV + +P+F GQTK KL S
Sbjct: 294 EGFRAALTSVINDYARKNNILKEKEGNLTGDDIREGLTAVVSVKLADPQFEGQTKAKLGS 353

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLR 448
              +      + +    +L ++P +A ++++   + S+ R   RK RE  R+ + +    
Sbjct: 354 SFMRTLTRKVVSEGLADFLEEHPKQAREIIKKAQQASKARNAARKAREATRRKSLLETAS 413

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS   A  TELFIVEGDSAGGSAK  R R  QA+LPLRGKILNV   G  +  
Sbjct: 414 LPGKLADCSVRDAELTELFIVEGDSAGGSAKDGRRRDIQAILPLRGKILNVERVGDHRAF 473

Query: 509 NNQQIMDLVQALGCRTRS------QYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
           +++ I  L+ A+GC   +       +     RY K+IIMTDADVDGAHI  LLLTFFY+ 
Sbjct: 474 SSETIQSLITAIGCGVTTGNGDGGDFDITKARYHKIIIMTDADVDGAHIRILLLTFFYKY 533

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHD---EEHKQKILEEFKK------------- 606
           M  LI+  ++++  PP+F I    K  Y +    +   + + +  K              
Sbjct: 534 MRPLIDAGYVYVACPPIFGIKVRNKIHYVYPNGRQAEDEILRDSIKALGLNPDEADDEQA 593

Query: 607 -----HGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
                  +    + R+KGLGEM   QL  T MD   R L RV I   +        ++ +
Sbjct: 594 NGKVTKKRKGYTVQRYKGLGEMDPKQLASTTMDPKTRILQRVTIEDAVV----ADRAVRE 649

Query: 662 LMGTKADERFKFIQERASFIDDVGT 686
           LMG++   R ++I++ A     +  
Sbjct: 650 LMGSEVGYRREYIEKHAHDARFLDA 674


>gi|295426266|ref|ZP_06818926.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064005|gb|EFG54953.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus
           amylolyticus DSM 11664]
          Length = 662

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 242/654 (37%), Positives = 355/654 (54%), Gaps = 33/654 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ YD SSI+IL GLE VR RPGMYIG TD   L+ L  E++DN++DE +AGY   I 
Sbjct: 16  AKANTYDDSSIQILHGLEAVRKRPGMYIGSTDIHGLNQLVYEIVDNSVDEAMAGYGKEIN 75

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +  +TV D GRG+P   H     K T+E+ILT LHAGGKF    Y+ SGGLHGVG
Sbjct: 76  VTIHKDNSVTVRDFGRGMPTGMHK--SGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVG 133

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
            SVVNALS  L V V R    + ++F   G P+  L+   +  +K GT ITF+PD  IF 
Sbjct: 134 SSVVNALSSYLKVRVVRGGKAYEEEFQNGGHPIGTLKCVGETNDKTGTTITFKPDATIFS 193

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               +    + +  +  A+L   VK   + +++          + F +  G+K++++   
Sbjct: 194 T-TKYKYETIQERIRESAFLLKGVKFTLTDERDPE------HHDVFQYDDGIKSFVKYLN 246

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRV 336
           E +    S++F  + ++ G     +E++  + +   E   S+ N + T +GGTHE G R 
Sbjct: 247 EGK-GTISDVFYFEGKQDG---MEIEFSGQYSDGYSENLVSFVNNVRTADGGTHEVGARS 302

Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392
             TR    YA+      K+  +I   D       +LSV I E   EF GQTK KL +  A
Sbjct: 303 GFTRAFNDYAKKQGLFTKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQA 362

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLP 450
           +  V+  + +   +YL++N   A +L++      + R   +K R+ +R      +K  L 
Sbjct: 363 RSAVDALVYEKMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLS 422

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL           ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + I  N
Sbjct: 423 GKLTPAQSKNPKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKN 482

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++  +G    ++++ +D  Y+KVIIMTDAD DGAHI  LLLTFFY+ M  +IE+ 
Sbjct: 483 EEINTMIYTIGAGVGTEFKVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEKG 542

Query: 571 HLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +++  PPL+R+ +G     +  Y   +E     L E +K       + RFKGLGEM A 
Sbjct: 543 KVYIALPPLYRLQKGRGKKAEIKYDWTDEE----LAEDEKKMGRGYSLQRFKGLGEMNAE 598

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL +T M+   R L+RV I+         +  +  LMG K   R K+I+E   F
Sbjct: 599 QLWQTTMNPESRMLIRVRIDD----AALAERRVTTLMGDKVAARRKWIEENVKF 648


>gi|320533167|ref|ZP_08033889.1| DNA gyrase, B subunit [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320134627|gb|EFW26853.1| DNA gyrase, B subunit [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 675

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 252/679 (37%), Positives = 372/679 (54%), Gaps = 33/679 (4%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           +  + + + +Y AS I +LEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +AGY
Sbjct: 2   SDQDATVNHDYGASDITVLEGLEAVRKRPGMYIGSTGERGLHHLVYEVVDNSVDEALAGY 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
            + IEV++  +G + V DNGRGIPV+ HP   +K T+E+++T LHAGGKF    Y +SGG
Sbjct: 62  CDHIEVTILADGGVRVSDNGRGIPVDEHP-TEHKPTVEVVMTILHAGGKFGGGGYAVSGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVGISVVNALS  +   V RQ  ++   F+ G        K +     GT  TF PDP
Sbjct: 121 LHGVGISVVNALSTRVDTEVRRQGFVWRMSFADGGRPITELVKGETTESTGTTQTFYPDP 180

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP--------------- 258
            IF     FD   L +  Q  A+L+  ++   + ++   +  G                 
Sbjct: 181 SIFET-VDFDYETLRRRFQQMAFLNKGLRITLTDERIGVQDAGDEIAGDDSAPDAPEVGF 239

Query: 259 EKEEFYFPGGLKTYLQTKLENR--SLISSEIFTGKTEKK--GTHRGTVEWAIAWCEEN-P 313
             + + +  GL+ Y+    +++   LI  EI   + E+    TH  ++E A+ W      
Sbjct: 240 RTDSYCYEHGLRDYVAFLNKSKKAELIHPEIIDFEAEQSLGETHSISLEIAMQWTSAYSE 299

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
            + +Y NTI T EGGTHE G R ALT  + KYA       +R  ++  DD+      ++S
Sbjct: 300 SVHTYANTINTTEGGTHEEGFRTALTTLVNKYARDKGLLKERDDNLTGDDIREGLTAVIS 359

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V + EP+F GQTKTKL + +A+  V+  +      +L  +P +A  ++    + +  RL 
Sbjct: 360 VKLSEPQFEGQTKTKLGNTEARTFVQQTVYGQLGDWLDSHPSDARAIITKASQAAAARLA 419

Query: 432 RRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            RK RE  R+   +    +PGKL DCS   A  +E+FIVEGDSAGGSA   R+  +QA++
Sbjct: 420 ARKAREATRRKGVLESASMPGKLRDCSSKSAADSEIFIVEGDSAGGSAVGGRDPEHQAIM 479

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           P+RGKILNV  A  ++  ++  I  L+ A G      +    LRY K++IM DADVDG H
Sbjct: 480 PIRGKILNVEKARLDRALSSDTIRSLITAFGTGIGEDFDITKLRYGKIVIMADADVDGQH 539

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGK 609
           IA+LLLT  ++ M  LIE  H ++  PPL+R+     +  +A+ +  + K+L   ++ G+
Sbjct: 540 IATLLLTLLFRYMRPLIEHGHTYIAMPPLYRLKWSNAEHEFAYSDAERDKLLATGQEKGR 599

Query: 610 GKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK 666
              +   I R+KGLGEM   +L ET MD   R L +V +++      D  ++   LMG  
Sbjct: 600 RLPKDGGIQRYKGLGEMNDHELWETTMDPTTRILKQVTLDE----AADADETFAILMGDD 655

Query: 667 ADERFKFIQERASFIDDVG 685
            ++R  FIQ  AS +  + 
Sbjct: 656 VEQRRSFIQRNASDVRFLD 674


>gi|77406144|ref|ZP_00783217.1| DNA gyrase, B subunit [Streptococcus agalactiae H36B]
 gi|77408497|ref|ZP_00785234.1| DNA gyrase, B subunit [Streptococcus agalactiae COH1]
 gi|77172854|gb|EAO75986.1| DNA gyrase, B subunit [Streptococcus agalactiae COH1]
 gi|77175267|gb|EAO78063.1| DNA gyrase, B subunit [Streptococcus agalactiae H36B]
          Length = 620

 Score =  567 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 242/635 (38%), Positives = 365/635 (57%), Gaps = 25/635 (3%)

Query: 60  MRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119
           MRPGMYIG T ++ LHHL  E++DN++DE +AG+A  I+V ++ +  +TVVD+GRGIPV+
Sbjct: 1   MRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFAGHIKVYIEPDNSITVVDDGRGIPVD 60

Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179
              K   +  +E + T LHAGGKF    Y++SGGLHGVG SVVNALS +L V V +   +
Sbjct: 61  IQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSTQLDVKVYKNGKV 119

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
             Q++ RG+ ++ LE      +  GT + F PDP+IF +   FD  +L K  Q  A+L+ 
Sbjct: 120 HYQEYQRGVVVNDLEIIGDT-DLSGTTVHFTPDPEIFTETTVFDFDKLAKRIQELAFLNR 178

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            ++   S  +E  E         +++ GG+ +Y++   EN+ +I         E  G   
Sbjct: 179 GLRISISDKREGQEVEKE-----YHYEGGIGSYVEFINENKEVIFENPIYTDGELDGI-- 231

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
            +VE A+ +       + S+ N I T EGGTHE G R ALTR I  YA+  +   +   +
Sbjct: 232 -SVEVAMQYTTGYQETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKILKENEDN 290

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           +  +D+      ++SV    P+F GQTKTKL + +  +       + F+ +L++NP  A 
Sbjct: 291 LTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFNRFLLENPQVAK 350

Query: 417 KLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
           K++E  I  S+ R+  ++ RE   +K+ +    LPGKLADCS N A   ELFIVEGDSAG
Sbjct: 351 KIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNAEMNELFIVEGDSAG 410

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           GSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I  L  A+G    + +    +RY
Sbjct: 411 GSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGFGADFDVSKVRY 470

Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHD- 593
           +K++IMTDADVDGAHI +LLLT  Y+ M  ++E  ++++  PP++ +  G++   Y    
Sbjct: 471 QKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKAYIQPG 530

Query: 594 ---EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
              EE  ++ L+ +   G+ K  + R+KGLGEM   QL ET MD   R + RV ++    
Sbjct: 531 VNQEEELRQALDTYS-SGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVSVDD--- 586

Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              +     + LMG + + R +FI+  A +  ++ 
Sbjct: 587 -AAEADKIFDMLMGDRVEPRREFIEANAVY-SNLD 619


>gi|332177969|gb|AEE13658.1| DNA topoisomerase (ATP-hydrolyzing) [Thermodesulfobium narugense
           DSM 14796]
          Length = 632

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 248/650 (38%), Positives = 361/650 (55%), Gaps = 29/650 (4%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y +  I +LEG+E VR RPGMYIG    K L HL  EV+DN++DE +AGY   I V++  
Sbjct: 3   YTSKDIVVLEGMEAVRKRPGMYIGSIGIKGLLHLVYEVVDNSVDEFMAGYCKKISVTIHK 62

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           + ++T+ D+GRGIP + H +  NK+ LE++LTTLHAGGKF++  Y++SGGLHGVG+SVVN
Sbjct: 63  SNYVTIEDDGRGIPTDIHEQ-TNKNALELVLTTLHAGGKFNDKVYKVSGGLHGVGVSVVN 121

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS+    TV R   IF+Q+FSRG P+S ++   +  +K GT+I F PD +IF D     
Sbjct: 122 ALSERFIATVYRDGKIFTQEFSRGNPVSEIKIIGE-SDKHGTKIKFLPDKEIFKDITWDT 180

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L    Q  A+L+  ++  +S ++       I EKE FY   G+  +++   +N   +
Sbjct: 181 -DELKARFQEIAFLNPGLEIVFSDER-------IGEKETFYDEKGILGFVEYLNKNSKPL 232

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRGI 342
            S     + E +  +   V+ A+   +     I  + N I T EGG+H +  + +LT+  
Sbjct: 233 YSPPIVIQGEYEEVY---VDIALQHVDSTYENIICFANNIATKEGGSHLTAFKNSLTKLT 289

Query: 343 KKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            +YA+  +  K   +   +D+      ++SV ++EP F GQTKTKL SL+A+  VE  + 
Sbjct: 290 NQYAKDKKILKEDENFQGEDIRSGLTAVISVKLKEPLFEGQTKTKLSSLEAKNAVEKLME 349

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL-PGKLADCSQNI 460
                   +  +    +   +  +      ++ +  V +K         PGKLA CS   
Sbjct: 350 KFIIELESKPEVANMIIKSSLAAKEAREAAKKARDMVRKKHDFTSSISLPGKLALCSSKK 409

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
               ELFIVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI  NQ+I  L  ++
Sbjct: 410 PEECELFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKANIDKILANQEIKALAASI 469

Query: 521 GCRTRSQ-----YREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           G     +        ++LR+ K+IIMTDADVDG+HI +LLLT F++    LIE   +F+ 
Sbjct: 470 GLSFYEEDKPVSDWIKNLRFHKIIIMTDADVDGSHIRTLLLTLFFRYFRPLIETGKVFIA 529

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+ I +G +  YA ++E    IL E     K    I RFKGLGEM  SQL + AM+ 
Sbjct: 530 QPPLYMIRKGKERRYAMNDEELNDILSEI----KSPDSIQRFKGLGEMTPSQLWDVAMNP 585

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            KRT+L+V I        +       LMG   + R  FI+  A  + ++ 
Sbjct: 586 EKRTILKVCIED----ASEANRIFEILMGDNVEYRKAFIERYAREVKNLD 631


>gi|58039710|ref|YP_191674.1| DNA topoisomerase IV subunit B [Gluconobacter oxydans 621H]
 gi|58002124|gb|AAW61018.1| DNA topoisomerase I [Gluconobacter oxydans 621H]
          Length = 671

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 341/666 (51%), Positives = 439/666 (65%), Gaps = 12/666 (1%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86
                +      +    Y A  I +LEGLEPVR RPGMYIGGTD+ A HHL SE++DNAM
Sbjct: 10  TGKTRTGGARKGTVDTEYGAHDIEVLEGLEPVRRRPGMYIGGTDDTAYHHLASEILDNAM 69

Query: 87  DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146
           DE +AG+A  I+V L+G   L V DNGRGIP + HPKFP KS LE+I TTLHAGGKF   
Sbjct: 70  DEAVAGHATTIDVRLEGPRTLMVRDNGRGIPTDPHPKFPEKSALEVIFTTLHAGGKFSGK 129

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
            Y+ SGGLHGVG SVVNALS++L V VAR  T++ Q F RG+ L+PL +     N+RGT 
Sbjct: 130 AYDTSGGLHGVGSSVVNALSEKLEVEVARDRTLYRQDFVRGVSLAPLAEVGNAPNRRGTT 189

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-YGIPEKEEFYF 265
           + F PDP+IFG+   F  ARL +M  SKA L   V   W C+    +     P +    F
Sbjct: 190 VRFTPDPEIFGNHH-FSPARLYRMCCSKAALFRGVTIQWKCEPSFIKAGDETPVEATIQF 248

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTE----KKGTHRGTVEWAIAWCEENPEIT-SYCN 320
           P GL+  L  +L     + + I+ G  E      G   G VEWA+A+ E       S+CN
Sbjct: 249 PNGLEDALSAELGPDPDLLTPIWAGDVELPIAADGRTGGRVEWAVAFLESGTASLSSFCN 308

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFA 380
           TI T +GGTHE+G R AL +G++ +    + KRA +I ++D++ S    LSVFIR+P+F 
Sbjct: 309 TIPTPQGGTHEAGFRAALVKGLRAWGVQRKVKRAAAISAEDVLGSVAAKLSVFIRDPQFQ 368

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTK KL S +A R VE ALRD  DH+L  NP +A  LL +++ER+EERLRRR+ ++  R
Sbjct: 369 GQTKDKLTSQEASRLVEGALRDRVDHWLGGNPQQADTLLAFMVERAEERLRRREVKDTAR 428

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A RKLRLPGKL DC++  A  TELF+VEG+SAGGSA+QAR+R  QAVLPLRGKILNVA
Sbjct: 429 KSATRKLRLPGKLTDCTRENAAETELFLVEGESAGGSARQARDRETQAVLPLRGKILNVA 488

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           SA ++K+R NQ++ DL +ALGC   + +    LRY +VIIMTDADVDGAHIASLL+TFFY
Sbjct: 489 SATTDKLRANQELRDLTEALGCGIGASFDISRLRYGRVIIMTDADVDGAHIASLLMTFFY 548

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK-QKILEEFKKHGKGKIEISRFKG 619
           +EM +LI   HL L  PPL+RIT G K+VYA D++ + ++I  +FK +   K+E+SRFKG
Sbjct: 549 REMPELIRHGHLHLAQPPLYRITHGPKTVYAMDDQDRVRRIKADFKPN--AKVEVSRFKG 606

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679
           LGEM    LKET MD  +RTLLRV           T + +  LMG K + RF+FIQE A 
Sbjct: 607 LGEMPVKDLKETTMDPARRTLLRVITP--AEDRLATSERVESLMGRKPELRFRFIQEHAR 664

Query: 680 FIDDVG 685
            +D++ 
Sbjct: 665 SVDELD 670


>gi|111219512|ref|YP_710306.1| DNA gyrase subunit B [Frankia alni ACN14a]
 gi|111147044|emb|CAJ58691.1| DNA gyrase subunit B [Frankia alni ACN14a]
          Length = 656

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 250/669 (37%), Positives = 361/669 (53%), Gaps = 29/669 (4%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
           D+ A    +    YDASSI++LEGL+ VR RPGMYIG T E+ LHHL  EV+DNA+DE +
Sbjct: 2   DTSAQNEGTRRVAYDASSIKVLEGLDAVRKRPGMYIGSTGERGLHHLVYEVVDNAVDEAL 61

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AGY + I VSL  +G + VVDNGRGIPV  HP    +  +E++LTTLHAGGKFD  +Y +
Sbjct: 62  AGYCDTITVSLLADGAVRVVDNGRGIPVGMHP-TEKRPAVEVVLTTLHAGGKFDGKSYAV 120

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS +L V +     ++ Q +  G   +    K     K GT +TF 
Sbjct: 121 SGGLHGVGVSVVNALSTKLDVEIQVDGHVWFQPY-VGTRPAAPLVKTGTTKKTGTSVTFW 179

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
            DP IF     +    L +  Q  A+L+  +      ++          +  + +  GL 
Sbjct: 180 ADPTIFET-TEYKFETLSRRLQEMAFLNKGLSITLIDER-----PEERLEVTYKYTNGLV 233

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            ++      +  I   + + +++  G      E A+ W       + ++ NTI T EGGT
Sbjct: 234 DFVAHLNATKDAIHRSVISLESKGVGI---EAELAMQWNAGYSESVYTFANTINTHEGGT 290

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISI---------ISDDLMISAVGILSVFIREPEFA 380
           HE G R ALT  +  YA+     + +             DD+      I+SV + +P+F 
Sbjct: 291 HEEGFRAALTSAVNAYAKDQNLLKPVKAGAKSGDERLSGDDIREGLTAIISVKLAQPQFE 350

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VN 439
           GQTKTKL + +A++ V+         +   N  EA  ++   ++    R+  R+ R+   
Sbjct: 351 GQTKTKLGNTEAKKFVQEMCYSALKDWFEVNRTEARAIVSKSLDAQRARIAARQARDLTR 410

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK  +    LPGKLADC        EL+IVEGDSAGGSAK  R+   QA+LPLRGKILNV
Sbjct: 411 RKGLLGGTGLPGKLADCQYTDPERCELYIVEGDSAGGSAKGGRDSKFQAILPLRGKILNV 470

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
             A  +++  N ++  L+QALG      +    LRY K+++M DADVDG HI +LLLT  
Sbjct: 471 EKARIDRVLKNTEVQALIQALGTGIHDDFDIAKLRYHKIVLMADADVDGQHIRTLLLTLL 530

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKG--KIEISR 616
           ++ M  L+E  H+FL  PPL++I  G +   YA+ +  +  +++   + G+   K  I R
Sbjct: 531 FRFMRPLVEAGHVFLAQPPLYKIKWGREDWEYAYSDRERDGLVQRGVEAGRKLPKDAIQR 590

Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           FKGLGEM A++L +T MD +KR LL+V ++          +  + LMG   D R  FIQ 
Sbjct: 591 FKGLGEMNATELWDTTMDPDKRILLQVTLDD----AAVADELFSVLMGEDVDARRSFIQR 646

Query: 677 RASFIDDVG 685
            A  +  + 
Sbjct: 647 NAKDVRFLD 655


>gi|94992112|ref|YP_600211.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS2096]
 gi|94545620|gb|ABF35667.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS2096]
          Length = 651

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 251/653 (38%), Positives = 372/653 (56%), Gaps = 25/653 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHL-FSEVIDNAMDEVIAGYANL 96
           +     YDAS I++LEGLE VRMRPGMYIG T +     +   E++DN++DE +AG+A+ 
Sbjct: 9   EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKAGFASISVWEIVDNSIDEALAGFASH 68

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+V ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHG
Sbjct: 69  IKVFIEADNSITVVDDGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHG 127

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS +L V V +   I  Q+F RG  ++ LE          T + F PDP+IF
Sbjct: 128 VGSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVIGTTDVTG-TTVHFTPDPEIF 186

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   FD + L K  Q  A+L+  +K   +  +   E     ++E F++ GG+ +Y++  
Sbjct: 187 TETTQFDYSVLAKRIQELAFLNHGLKISITDKRSGME-----QEEHFHYEGGIGSYVEFL 241

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            + + +I         E +G     VE A+ +       + S+ N I T EGGTHE G R
Sbjct: 242 NDKKDVIFETPIYTDGELEGI---AVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFR 298

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR I  YA+  +   +   ++  +D+      ++SV    P+F GQTKTKL + +  
Sbjct: 299 AALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVV 358

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
           +       + F  +L++NP  A K++E  I  S+ R+  ++ RE   +K+ +    LPGK
Sbjct: 359 KITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGK 418

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS N A+  ELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++
Sbjct: 419 LADCSSNDANQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEE 478

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  L  A+G    + +     RY+K++IMTDADVDGAHI +LLLT  Y+ M  ++E  ++
Sbjct: 479 IRSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYV 538

Query: 573 FLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           ++  PP++ +  G++   Y       E+  +  LE++   G+ K  + R+KGLGEM   Q
Sbjct: 539 YIAQPPIYGVKVGSEIKEYIQPGIDQEDQLKTALEKYS-IGRSKPTVQRYKGLGEMDDHQ 597

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET MD   R + RV ++       +     + LMG + + R  FI+E A +
Sbjct: 598 LWETTMDPENRLMARVTVDD----AAEADKVFDMLMGDRVEPRRDFIEENAVY 646


>gi|306834803|ref|ZP_07467867.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Corynebacterium
           accolens ATCC 49726]
 gi|304569331|gb|EFM44832.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Corynebacterium
           accolens ATCC 49726]
          Length = 689

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 250/697 (35%), Positives = 375/697 (53%), Gaps = 64/697 (9%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
              YDA SI ILEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AG+A+ + V 
Sbjct: 4   EHAYDAGSITILEGLEAVRKRPGMYIGSTGSRGLHHLIWEIVDNSVDEAMAGFADKVTVK 63

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +G + V+DNGRGIPVE H       T+++++T LHAGGKFD+ +Y +SGGLHGVGIS
Sbjct: 64  LLEDGGVEVIDNGRGIPVEMH--ASGAPTVQVVMTQLHAGGKFDSDSYAVSGGLHGVGIS 121

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  +   + R+   + Q F   IP   +E         GT+I F  DP+IF    
Sbjct: 122 VVNALSTRVEAEIKREGKHWYQNFQNAIPDDLVE--GGNARGTGTKIRFWADPEIFETT- 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP---------------------- 258
            FD   + +  Q  A+L+  +      ++   E+  +                       
Sbjct: 179 EFDYDTIARRLQEMAFLNKGLTIELIDERVTEEQIELEEIADAESGEASADETSFDDVPD 238

Query: 259 ----------------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG 296
                                 +K  F++P GL  Y++   +++S I   I + + + + 
Sbjct: 239 AGDTFNEEADSKNVTKADKKRRKKITFHYPEGLTDYVKFLNKSKSAIHPTIVSFEAKGED 298

Query: 297 THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKR 353
                VE A+ W +     + ++ NTI T EGGTHE G R ALT  + +YA+  +    +
Sbjct: 299 H---EVEVALQWNQGYKQSVHTFANTINTHEGGTHEEGFRAALTSLMNRYAKEHKLIKDK 355

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
             ++  DD       ++SV + +P+F GQTKTKL + + +  V+ ++ +  + +   NP 
Sbjct: 356 DGNLSGDDCREGLAAVISVKVGDPQFEGQTKTKLGNSEIKGFVQRSVNEYVNDWFDANPA 415

Query: 414 EATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
           EA  ++   +  +  R+  RK RE+  RK+A     LPGKLADC       +EL+IVEGD
Sbjct: 416 EAKAIINKAVSSAHARMAARKAREMVRRKSATDLGGLPGKLADCRSKDPRSSELYIVEGD 475

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           SAGGSAK  R+   QA+LPLRGKILNV  A  +K+  N ++  ++ ALG     ++  + 
Sbjct: 476 SAGGSAKAGRDSMFQAILPLRGKILNVEKARMDKVLKNAEVQAIITALGTGIHEEFDIKK 535

Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YA 591
           LRY+K+++M DADVDG HIA+LLLT  ++ M  L+E  H++L +PPL+++     +  YA
Sbjct: 536 LRYDKIVLMADADVDGQHIATLLLTLLFRFMPQLVEDGHVYLANPPLYKLKWSKGTPGYA 595

Query: 592 HDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648
             ++ + K+L E  +  +   +   I R+KGLGEM AS+L ET +D + R L RV    D
Sbjct: 596 FSDDERDKLLAEGLEQNRKINKDDGIQRYKGLGEMNASELWETTLDPSTRLLRRV----D 651

Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           L   +   +  + LMG     R  FI  RA  +  + 
Sbjct: 652 LEDAQRADELFSILMGDDVAARRSFITRRAKDVRFLD 688


>gi|1708089|sp|P50074|GYRBR_STRSH RecName: Full=DNA gyrase subunit B, novobiocin-resistant
 gi|581742|emb|CAA78951.1| gyrase B (novobiocin-resistant) [Streptomyces caeruleus]
          Length = 677

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 237/679 (34%), Positives = 361/679 (53%), Gaps = 23/679 (3%)

Query: 23  LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82
             ++              + +YDA++I +L+GL+ VR RPGMYIG T E+ LHHL  E++
Sbjct: 5   DTRTATDTRGSEQPGHVGTASYDANAITVLDGLDAVRKRPGMYIGSTGERGLHHLVQELV 64

Query: 83  DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142
           DN++DE +AG A+ I+V++  +G + VVDNGRGIPV  HP    +  +E++LT LHAGGK
Sbjct: 65  DNSVDEALAGVADRIDVTVLADGGVRVVDNGRGIPVGMHP-VEKRPAVEVVLTVLHAGGK 123

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           F    Y +SGGLHGVG+SVVNALS  L   +      ++Q +  G P +PL + E     
Sbjct: 124 FGGGGYGVSGGLHGVGLSVVNALSTRLSAEIWTDGHRWTQDYRDGAPTAPLARHEATSR- 182

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------EIAE 253
            GT +TF  D  IF     +    L +  Q  A+L+G +    + ++         + A+
Sbjct: 183 TGTSLTFWADGDIFET-TEYSFETLARRHQEMAFLNGGLTLTLTDERSSARATAAVDEAD 241

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP 313
                +   + + GG+  ++      +   +         +      + E A+ W  +  
Sbjct: 242 SDPTAKTVSYRYDGGITDFVVHLNARKGEPAHPSVITIAAEDTERLLSAEIALQWNGQYT 301

Query: 314 E-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGIL 370
           + + SY N I T EGGTHE G R ALT  + +YA   +    +  ++  +D+      I+
Sbjct: 302 DSVYSYANAIHTHEGGTHEEGFRTALTTVVNRYAREKRLLRDKDANLSGEDIREGLTAII 361

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV + EP+F GQTKTKL + + +  ++  + +    +  +NP EA  ++   ++ +  R+
Sbjct: 362 SVNVGEPQFEGQTKTKLGNTEVRTLLQKIVHEHLADWFDRNPNEAVDIVRKAVQAATARV 421

Query: 431 RRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK R++ R+   +    LPGKL+DC  N    +E+FIVEGDSAGGSAK  RN   QA+
Sbjct: 422 AARKARDLTRRKGLLETAALPGKLSDCQSNDPATSEIFIVEGDSAGGSAKAGRNPQYQAI 481

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549
           LP+RGKILNV  A  +K+  NQ+   L+ A G      +    LRY K+I+M DADVDG 
Sbjct: 482 LPIRGKILNVEKARIDKVLQNQENQALISAFGTGVHEDFDIAKLRYHKIILMADADVDGQ 541

Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTK-SVYAHDEEHKQKILE--EFKK 606
           HI++LLLTF ++ M  L+E+ H+ L  PPL++I    +   YA+ +  +  +LE      
Sbjct: 542 HISTLLLTFLFRFMRPLVEEGHVHLSRPPLYKIKWSREHVEYAYSDRERNTLLERGRRDG 601

Query: 607 HGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK 666
                  I RFKGLGEM A +L+ T MD + R L +V ++          D  + LMG  
Sbjct: 602 RRIRDDSIQRFKGLGEMNAEELRVTTMDPDHRVLGQVTLDD----AAFADDLFSVLMGED 657

Query: 667 ADERFKFIQERASFIDDVG 685
            + R  FIQ  A  +  + 
Sbjct: 658 VEARRHFIQRNAQDVRFLD 676


>gi|255324004|ref|ZP_05365129.1| DNA gyrase, B subunit [Corynebacterium tuberculostearicum SK141]
 gi|255298861|gb|EET78153.1| DNA gyrase, B subunit [Corynebacterium tuberculostearicum SK141]
          Length = 689

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 249/697 (35%), Positives = 373/697 (53%), Gaps = 64/697 (9%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
              YDA SI ILEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AGYA+ + V 
Sbjct: 4   EHAYDAGSITILEGLEAVRKRPGMYIGSTGSRGLHHLIWEIVDNSVDEAMAGYADKVTVK 63

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +G + V+DNGRGIPVE H       T+++++T LHAGGKFD+ +Y +SGGLHGVGIS
Sbjct: 64  LLEDGGVEVIDNGRGIPVEMH--ASGAPTVQVVMTQLHAGGKFDSDSYAVSGGLHGVGIS 121

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  +   + R    + Q F   IP   +E         GT+I F  DP++F    
Sbjct: 122 VVNALSTRVEAEIKRDGKHWYQNFQNAIPDELVE--GGNARGTGTKIRFWADPEVFETT- 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP---------------------- 258
            +D   + +  Q  A+L+  +      ++   E+  +                       
Sbjct: 179 EYDYDTIARRLQEMAFLNKGLSIELIDERVTEEQIELEEIADAESGETSADETSFDDAPD 238

Query: 259 ----------------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG 296
                                 +K  F++P GL  Y++   ++++ I   I +   + + 
Sbjct: 239 AGDTFNEESGEAEDAAAEKKRRKKVTFHYPDGLTDYVKYLNKSKTAIHPTIVSFDAKGED 298

Query: 297 THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKR 353
                VE A+ W +     + ++ NTI T EGGTHE G R ALT  + +YA+  +   ++
Sbjct: 299 H---EVEVALQWNQGYKQSVHTFANTINTHEGGTHEEGFRAALTSLMNRYAKEHKLLKEK 355

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
             ++  DD       ++SV + +P+F GQTKTKL + + +  V+ A+ +  + +   NP 
Sbjct: 356 DGNLSGDDCREGLAAVISVKVGDPQFEGQTKTKLGNSEIKGFVQRAVNEHVNDWFDANPA 415

Query: 414 EATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
           EA  ++   +  +  R+  RK RE+  RK+A     LPGKLADC       +EL+IVEGD
Sbjct: 416 EAKAIINKAVSSAHARMAARKAREMVRRKSATDLGGLPGKLADCRSKDPKISELYIVEGD 475

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           SAGGSAK  R+   QA+LPLRGKILNV  A  +K+  N ++  ++ ALG     ++  + 
Sbjct: 476 SAGGSAKGGRDSMFQAILPLRGKILNVEKARMDKVLKNAEVQAIITALGTGIHEEFDIKK 535

Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YA 591
           LRY+K+++M DADVDG HIA+LLLT  ++ M  L+E  H+FL +PPL+++     +  YA
Sbjct: 536 LRYDKIVLMADADVDGQHIATLLLTLLFRFMPQLVEDGHVFLANPPLYKLKWSKGTPGYA 595

Query: 592 HDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648
             +  + K+L E  +  +   +   I R+KGLGEM A++L ET +D + R L RV    D
Sbjct: 596 FSDAERDKLLAEGLEQNRKINKDDGIQRYKGLGEMNAAELWETTLDPSTRILRRV----D 651

Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           L   +   +  + LMG     R  FI  RA  +  + 
Sbjct: 652 LEDAQRADELFSILMGDDVSARRSFITRRAKDVRFLD 688


>gi|291519486|emb|CBK74707.1| DNA topoisomerase IV subunit B [Butyrivibrio fibrisolvens 16/4]
          Length = 641

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 238/655 (36%), Positives = 349/655 (53%), Gaps = 32/655 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            YD SSI +LEGLE VR RPGMYIG T  K L+HL  E++DN++DE +AG  + I V+L+
Sbjct: 6   TYDESSIAVLEGLEAVRKRPGMYIGSTSRKGLNHLIYEIVDNSVDEHLAGECDTIYVTLE 65

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G  TV DNGRGIPV  H K        ++ +TLHAGGKFD+S Y+ SGGLHGVG SVV
Sbjct: 66  KDGSCTVEDNGRGIPVGMHAK--GVPAARLVFSTLHAGGKFDDSVYKTSGGLHGVGSSVV 123

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEK----KEKVRNKRGTRITFRPDPKIFGD 218
           NALS+ + V ++R   +   ++ RG+P   L      K    NK GT+I F PD +IF  
Sbjct: 124 NALSEYMVVDISRDGFVHHDRYERGVPTEKLVDGLLPKISKTNKHGTKINFLPDAEIFEK 183

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    +       AYL+  +   ++  +        PE   ++ P G+K +++   +
Sbjct: 184 TY-FKEDEVKSRLHETAYLNPGLTINYADLR-----GETPEYITYHEPEGIKGFVKEINK 237

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
               +  ++     +        +E A  +C E    I  +CN I   EGGTH +G +  
Sbjct: 238 TAETLH-DVVYFSGKCDDV---ELEVAFQYCNEFKENILGFCNNIYNSEGGTHITGFKTV 293

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LT  I  YA        +  +    D+      I+S+   +P F GQTKTKL + DA + 
Sbjct: 294 LTTVINNYARELGILKDKDANFTGADVRNGITAIVSIKHPDPRFEGQTKTKLDNPDASKA 353

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
            +   +D F  +  +N      ++    + ++ R    K +              GKLA+
Sbjct: 354 TQKVCQDEFVLFFDRNLETLKAIISCAEKSAKIRKSEEKAKTNLLTKQKFSFDQNGKLAN 413

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C    A   E+FIVEGDSAGGSAK+ARNR  QA++P+RGKILNV  A  +K+  N +I  
Sbjct: 414 CESRDAEKCEIFIVEGDSAGGSAKKARNRMYQAIMPIRGKILNVEKASMDKVLANAEIKT 473

Query: 516 LVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           L+ A GC       + +    LRY+K++IM DADVDGAHI++LLLTFFY+ M +LI + H
Sbjct: 474 LINAFGCGFSEGYGNDFDITKLRYDKIVIMADADVDGAHISTLLLTFFYRFMPELIREGH 533

Query: 572 LFLISPPLFR-ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           +++  PPL++ I    +  Y +D+   ++  ++ +        + R+KGLGEM A QL E
Sbjct: 534 VYIAMPPLYKAIPTKGEEEYLYDDVALERYRKKMEG---KTFTLQRYKGLGEMDAEQLWE 590

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T +D  +R L  VEI   L + + T+     LMG+    R +FI + A   + + 
Sbjct: 591 TTLDPERRKLKLVEIEDGLMASEVTE----LLMGSDVAPRKQFIYKHAKEAE-LD 640


>gi|168056555|ref|XP_001780285.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668339|gb|EDQ54949.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 640

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 239/650 (36%), Positives = 358/650 (55%), Gaps = 26/650 (4%)

Query: 50  RILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTV 109
           ++LEGLE VR RPGMYIG T  K LHHL  EV+DNA+DE  AG+A+ ++V +  +G +++
Sbjct: 2   QVLEGLEAVRKRPGMYIGSTGTKGLHHLVYEVLDNAIDEAQAGFASTVDVVIHTDGSVSI 61

Query: 110 VDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST--YEISGGLHGVGISVVNALSD 167
            DNGRGIP + HP    KS LE +LT LHAGGKF   +  Y +SGGLHGVGISVVNALS+
Sbjct: 62  SDNGRGIPTDVHP-VTRKSALETVLTVLHAGGKFGGESSGYSVSGGLHGVGISVVNALSE 120

Query: 168 ELHVTVARQNTIFSQKFSRGI---PLSPLEKKEKVRNKRGTRITFRPD---PKIFGDKAG 221
            + VTV R    + Q F  G    PLS        + + GTR+ F PD    ++F     
Sbjct: 121 RVDVTVWRNGHEYRQSFEFGKAVSPLSAFPLPNDQKGRTGTRVKFLPDKQGKQLFTSTTE 180

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   +    +  A+L+ +V      +   +EK        ++F GGL  Y+     ++ 
Sbjct: 181 FDYNTISGRARELAFLNPQVTINLMQEHANSEKV---RSNAYHFSGGLNEYVLWLNNDKE 237

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
            +     +   E++G     V    +  +    I  Y N+I T +GGTH  G++ A+TR 
Sbjct: 238 RLHEP-ISIHREREGVA-IDVALQWSADQYTDTILGYANSIRTSDGGTHLDGMKAAVTRT 295

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +       +   ++  ++  D        +++V +  PEF GQTKT+L + + +R V+ A
Sbjct: 296 LNTLGRKAKILKEKDENLSGDHAREGLTCVVAVKVPNPEFEGQTKTRLGNPEVRRIVDQA 355

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
           +++    YL Q+P     +L   ++        ++ +  V RK  ++   LPGKL+DCS 
Sbjct: 356 VQELVTEYLEQHPNTLEAILSKALQAFRAAMAAKKARELVRRKNVLKSSMLPGKLSDCSC 415

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E+FIVEGDSAGGSAKQ R+R  QA+LPLRGKILN+       I  NQ+I +L+ 
Sbjct: 416 TDPRNAEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDDAAIYKNQEIQNLIL 475

Query: 519 ALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
           ALG   + +   +D LRY K+II+TDADVDGAHI +LLLTFF++    L E   +++  P
Sbjct: 476 ALGLGVKGEEFSKDSLRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFEAGCIYVGVP 535

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+++ +G ++ Y  +E   + +L+ F  +      I RFKGLGEM+  QL ET +D  +
Sbjct: 536 PLYKVERGKQAHYCFNESDLKNVLKTFPSN--ASYNIQRFKGLGEMMPQQLWETTLDPQQ 593

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF--IDDVG 685
           R L  + +        +     + LMG K + R + I+  AS   ++++ 
Sbjct: 594 RMLKLLTLED----AAEASMMFSTLMGDKVEPRKELIRTNASRMKLENLD 639


>gi|331082962|ref|ZP_08332082.1| hypothetical protein HMPREF0992_01006 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330399957|gb|EGG79615.1| hypothetical protein HMPREF0992_01006 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 640

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 246/661 (37%), Positives = 347/661 (52%), Gaps = 37/661 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  + YDASSI +LEGLE VR RPGMYIG    K L+HL  E++DNA+DE +AGY   I 
Sbjct: 2   AKKNTYDASSITVLEGLEAVRKRPGMYIGSVSRKGLNHLIYEIVDNAVDEHLAGYCKNIR 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+L+ +G  T+ D+GRGIPV  H K    S   ++ TTLHAGGKFD+S Y+ SGGLHGVG
Sbjct: 62  VTLEKDGSATIEDDGRGIPVGMHEK--GMSAERLVFTTLHAGGKFDDSVYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGTRITFRPDP 213
            SVVNALS  L + V+    I    + RGIP  PLE     K  + +   GT I F PD 
Sbjct: 120 SSVVNALSAFLDIKVSTGGYIHHDHYERGIPTIPLEDGLLPKLGRTK-TTGTCINFLPDD 178

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IF     F +  +       AYL+  +   +  ++         E+  F+ P G+  ++
Sbjct: 179 EIFEK-TRFSSTEVKSRLHETAYLNPELTILFQDNR-----GVESEEIVFHEPDGIVGFI 232

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   +    I       K E  G    TVE A  +  E    +  +CN I   EGGTH +
Sbjct: 233 KDLNKKSECIHEP-VYFKGESDGI---TVEVAFQYVNEFRENVLGFCNNIYNSEGGTHLT 288

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G +   T  +  YA       ++  +    D+      ++S+    P F GQTKTKL + 
Sbjct: 289 GFKTTFTSVMNTYARELGILKEKDSNFTGADVRNGMTAVVSIKHPAPRFEGQTKTKLDNQ 348

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
           DA +       +    Y  +N      +L    + ++ R    K +              
Sbjct: 349 DASKATGKVTGEEIVLYFDRNLDVLKSVLACAEKSAKIRKTEEKAKTNLLTKQKYSFDSN 408

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL++C +      E+FIVEGDSAGGSAK AR+RS QA+LP+RGKILNV  A  +K+  N
Sbjct: 409 GKLSNCEKRDPSLCEIFIVEGDSAGGSAKSARDRSFQAILPIRGKILNVEKATIDKVLAN 468

Query: 511 QQIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
            +I  ++ A GC       + +    LRY K+IIM DADVDGAHI++LLLT FY+ M +L
Sbjct: 469 AEIKTMINAFGCGFSEGYGNDFDITKLRYNKIIIMADADVDGAHISTLLLTLFYRFMPEL 528

Query: 567 IEQKHLFLISPPLFRI--TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
           I + H+++  PPL++   T+G +  Y +D+    K LE++++  KG   + R+KGLGEM 
Sbjct: 529 IYEGHVYIAMPPLYKAMPTKGKEE-YLYDD----KALEKYRRTHKGSFTLQRYKGLGEMD 583

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           A QL ET ++   R L  VEI     + + T+     LMGT+   R  FI E A     +
Sbjct: 584 AQQLWETTLNPETRMLRLVEIEDARMASEVTE----ILMGTEVPPRKAFIYEHARDA-QL 638

Query: 685 G 685
            
Sbjct: 639 D 639


>gi|71893463|ref|YP_278909.1| DNA gyrase subunit B [Mycoplasma hyopneumoniae J]
 gi|71851590|gb|AAZ44198.1| DNA gyrase subunit B [Mycoplasma hyopneumoniae J]
          Length = 639

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 247/649 (38%), Positives = 367/649 (56%), Gaps = 21/649 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S +Y A +I +LEGLE VR RPGMYIGGT    LHHL  E++DNA+DE +AG+A+ I+V+
Sbjct: 2   SKDYQAENIVVLEGLEAVRKRPGMYIGGTGINELHHLVWEIVDNAVDEALAGFASKIKVT 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  +++ D+GRGIP   HPK+   S  E++ T LHAGGKFD  +Y++SGGLHGVG S
Sbjct: 62  ILDDFKISIEDDGRGIPTGIHPKYE-ISAAEVVFTVLHAGGKFDGKSYKVSGGLHGVGAS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGD 218
           VVNALS EL V + R   ++ QKF  G   +           ++ GT+I F PD +I   
Sbjct: 121 VVNALSKELEVFIKRDGKLWYQKFINGGQKTADLSVISNLDSSQSGTKIIFSPDFEILEK 180

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    +    ++ AYL+ R++      +           + F F GG+  Y++   +
Sbjct: 181 N-SFQLLTIFNRLKNTAYLTRRIQFELIDKRS-------DFSQTFCFEGGISDYVEELSK 232

Query: 279 N-RSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLRV 336
           N + L ++ I++    +       VE+A+ +  E++ +I SY N I   EGG+HE+GL  
Sbjct: 233 NFKKLTNTIIYSENQYEHNQDTIKVEFALNYVQEDHSQIKSYTNNIHNPEGGSHENGLCD 292

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
            L R +  YA   +         +  D+    + I+S+    P F GQTK KL + + ++
Sbjct: 293 GLLRILNNYALSNKFIKSETDKFVKQDIKDGLIAIVSIKHTNPIFEGQTKAKLNNKEVRQ 352

Query: 395 TVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
            V  A  + F  YL +NP +A K++   ++ +   R  +  +  + RK+A     LPGKL
Sbjct: 353 FVNKAFSEVFQRYLAENPEDAKKIIARNLLAQKAARAAKSAREAIKRKSAFDIGTLPGKL 412

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC    +   EL+IVEG+SAGGSAK  R+R  QA+LPLRGK++N      EK+  N++I
Sbjct: 413 ADCGTKNSEIAELYIVEGNSAGGSAKMGRDRHFQAILPLRGKVINSQRFQLEKVLKNEEI 472

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
           + ++ A G     ++    +RY+K+IIMTDAD DG+HI SLLLTF ++    LIE   ++
Sbjct: 473 LSMITAFGTGVGPEFDISKIRYQKIIIMTDADSDGSHIRSLLLTFLFRYFKKLIEFGFVY 532

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           +  PPL++I+QG K  YA++E+ K+K L E  K    K  I R+KGLGEM   QL ET M
Sbjct: 533 IAIPPLYKISQGKKIFYAYNEKEKEKYLTEILKEN-SKFTIQRYKGLGEMNPEQLWETTM 591

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           D   R + +V+I    + L+      + LMGT    R  FI+E A +  
Sbjct: 592 DPQTRRMYQVQI----HDLEVVAQVFDSLMGTDVTMRKIFIEENAQYAK 636


>gi|210612462|ref|ZP_03289320.1| hypothetical protein CLONEX_01521 [Clostridium nexile DSM 1787]
 gi|210151570|gb|EEA82577.1| hypothetical protein CLONEX_01521 [Clostridium nexile DSM 1787]
          Length = 640

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 243/660 (36%), Positives = 349/660 (52%), Gaps = 35/660 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  + YDA SI ILEGLE VR RPGMYIG    K L+HL  E++DNA+DE +AGY + I+
Sbjct: 2   AKQNTYDADSISILEGLEAVRKRPGMYIGSVSTKGLNHLIYEIVDNAVDEHLAGYCDKIQ 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V L+ +G  TV+DNGRG+PV  H K    S   I+ TTLHAGGKFD++ Y+ SGGLHGVG
Sbjct: 62  VILEKDGSATVIDNGRGVPVGMHQK--GVSAARIVYTTLHAGGKFDDTAYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGTRITFRPDP 213
            SVVNALS  + V ++R+  I   ++ RGIP+  LE        K R   GT + F PD 
Sbjct: 120 SSVVNALSIYMDVKISREGAIHHDRYERGIPVVELENGLLPVIGKTRK-TGTEVNFLPDD 178

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF     F A  +       AYL+  +   +   +    ++       ++   G+  ++
Sbjct: 179 TIFEK-TRFKAEEVKSRLHETAYLNPNLTIIFEDRRGAQTEHIE-----YHEEDGILGFI 232

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHES 332
           +   + +  I       K E +G     VE    +  E +  +  +CN I   EGGTH +
Sbjct: 233 RDLNQKKEAIHEP-IYFKGESEGI---EVEVVFQYVNEFHENVLGFCNNIYNAEGGTHLT 288

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G +   T  + +YA       ++  +    D+      I+S+   +P F GQTKTKL + 
Sbjct: 289 GFKTTFTTAMNQYARELGILKEKDSNFTGADIRNGMTAIVSIKHPDPRFEGQTKTKLDNP 348

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
           DA +       +    Y  +N     K++    + ++ R    K +              
Sbjct: 349 DAAKATGKVTGEEIVRYFDRNLDTLKKVISCAEKAAKIRKTEEKAKTNLLTKQKYSFDSN 408

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLA+C    A   E+FIVEGDSAGGSAK AR+RS QA+LP+RGKILNV  A  +K+  N
Sbjct: 409 GKLANCESRDASKCEIFIVEGDSAGGSAKTARDRSYQAILPIRGKILNVEKASIDKVLAN 468

Query: 511 QQIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
            +I  ++ A GC       + +    LRY K+IIM DADVDGAHI++LLLT FY+ M +L
Sbjct: 469 AEIKTMINAFGCGFSEGYGNDFDITKLRYNKIIIMADADVDGAHISTLLLTLFYRFMPEL 528

Query: 567 IEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           I + H+++  PPL++   +  +  Y +D+    K LE ++K  KG   + R+KGLGEM A
Sbjct: 529 IFEGHVYIAMPPLYKAMPKKGEEEYLYDD----KALERYRKRQKGPFTLQRYKGLGEMDA 584

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL ET ++   R L  VEI     +   T+     LMG++   R  FI E A+  + + 
Sbjct: 585 DQLWETTLNPETRMLKLVEIEDARMASSVTE----MLMGSEVPPRRAFIYENATEAE-LD 639


>gi|311741695|ref|ZP_07715517.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303216|gb|EFQ79297.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 689

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 249/697 (35%), Positives = 373/697 (53%), Gaps = 64/697 (9%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
              YDA SI ILEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AGYA+ + V 
Sbjct: 4   EHAYDAGSITILEGLEAVRKRPGMYIGSTGSRGLHHLIWEIVDNSVDEAMAGYADKVTVK 63

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +G + V+DNGRGIPVE H       T+++++T LHAGGKFD+ +Y +SGGLHGVGIS
Sbjct: 64  LLEDGGVEVIDNGRGIPVEMH--ASGAPTVQVVMTQLHAGGKFDSDSYAVSGGLHGVGIS 121

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  +   + R    + Q F   IP   +E         GT+I F  DP++F    
Sbjct: 122 VVNALSTRVEAEIKRDGKHWYQNFQNAIPDELVE--GGNARGTGTKIRFWADPEVFETT- 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP---------------------- 258
            +D   + +  Q  A+L+  +      ++   E+  +                       
Sbjct: 179 EYDYDTIARRLQEMAFLNKGLSIELIDERVTEEQIELEEIADAESGETSADETSFDDAPD 238

Query: 259 ----------------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG 296
                                 +K  F++P GL  Y++   ++++ I   I +   + + 
Sbjct: 239 AGDTFNEESGEAKDAAADKKRRKKVTFHYPDGLTDYVKYLNKSKTAIHPTIVSFDAKGED 298

Query: 297 THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKR 353
                VE A+ W +     + ++ NTI T EGGTHE G R ALT  + +YA+  +   ++
Sbjct: 299 H---EVEVALQWNQGYKQSVHTFANTINTHEGGTHEEGFRAALTSLMNRYAKEHKLLKEK 355

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
             ++  DD       ++SV + +P+F GQTKTKL + + +  V+ A+ +  + +   NP 
Sbjct: 356 DGNLSGDDCREGLAAVISVKVGDPQFEGQTKTKLGNSEIKGFVQRAVNEHVNDWFDANPA 415

Query: 414 EATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
           EA  ++   +  +  R+  RK RE+  RK+A     LPGKLADC       +EL+IVEGD
Sbjct: 416 EAKAIINKAVSSAHARMAARKAREMVRRKSATDLGGLPGKLADCRSKDPKISELYIVEGD 475

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           SAGGSAK  R+   QA+LPLRGKILNV  A  +K+  N ++  ++ ALG     ++  + 
Sbjct: 476 SAGGSAKGGRDSMFQAILPLRGKILNVEKARMDKVLKNAEVQAIITALGTGIHEEFDIKK 535

Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YA 591
           LRY+K+++M DADVDG HIA+LLLT  ++ M  L+E  H+FL +PPL+++     +  YA
Sbjct: 536 LRYDKIVLMADADVDGQHIATLLLTLLFRFMPQLVEDGHVFLANPPLYKLKWSKGTPGYA 595

Query: 592 HDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648
             +  + K+L E  +  +   +   I R+KGLGEM A++L ET +D + R L RV    D
Sbjct: 596 FSDAERDKLLAEGLEQNRKINKDDGIQRYKGLGEMNAAELWETTLDPSTRILRRV----D 651

Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           L   +   +  + LMG     R  FI  RA  +  + 
Sbjct: 652 LEDAQRADELFSILMGDDVSARRSFITRRAKDVRFLD 688


>gi|325978699|ref|YP_004288415.1| DNA gyrase subunit B [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325178627|emb|CBZ48671.1| DNA gyrase subunit B [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 620

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 243/630 (38%), Positives = 362/630 (57%), Gaps = 24/630 (3%)

Query: 60  MRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119
           MRPGMYIG T ++ LHHL  E++DN++DE +AG+A  IEV ++ +  +TVVD+GRGIPV+
Sbjct: 1   MRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFATHIEVFIEKDDSITVVDDGRGIPVD 60

Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179
              K   +  +E + T LHAGGKF    Y++SGGLHGVG SVVNALS +L V V R   I
Sbjct: 61  IQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSTQLDVAVHRNGKI 119

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
             Q++ RG  +S L       ++ GT + F PDP+IF +   FD  +L K  Q  A+L+ 
Sbjct: 120 HYQEYRRGHVVSDLAVIGDT-DRHGTTVHFTPDPEIFTETTVFDFDKLAKRIQELAFLNR 178

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            ++   +  +E  E     +++ +++ GG+ +Y++   EN+ +I         E  G   
Sbjct: 179 GLRISITDKREGIE-----QEKHYHYEGGISSYVEFINENKEVIFENPIYTDGELDGI-- 231

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
            +VE A+ +       + S+ N I T EGGTHE G R ALTR I  YA   +   ++  +
Sbjct: 232 -SVEVAMQYTTSYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYARQNKLLKEKDDN 290

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           +  +D+      ++SV    P+F GQTKTKL + +  +       + F  +L++NP  A 
Sbjct: 291 LTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSRFLLENPQIAK 350

Query: 417 KLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
           K++E  I  S+ R+  ++ RE   +K+ +    LPGKLADCS N A   ELFIVEGDSAG
Sbjct: 351 KIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDATMNELFIVEGDSAG 410

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           GSAK  R+R +QA+LP+RGKILNV  A  +KI  N++I  L  A+G    +++     RY
Sbjct: 411 GSAKSGRDREHQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGFGAEFDVSKARY 470

Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHD- 593
            K++IMTDADVDGAHI +LLLT  Y+ M  ++E  ++++  PP++ +  G++   Y    
Sbjct: 471 HKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKEYIQPG 530

Query: 594 ---EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
              E   Q+ +      G+ K  + R+KGLGEM   QL ET MD   R + RV ++    
Sbjct: 531 ANQEIELQEAMAR-HSVGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVSVDD--- 586

Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASF 680
              +     + LMG + + R +FI+E A +
Sbjct: 587 -AAEADKIFDMLMGDRVEPRREFIEENAVY 615


>gi|308235537|ref|ZP_07666274.1| DNA gyrase subunit B [Gardnerella vaginalis ATCC 14018]
 gi|311114018|ref|YP_003985239.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Gardnerella
           vaginalis ATCC 14019]
 gi|310945512|gb|ADP38216.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Gardnerella
           vaginalis ATCC 14019]
          Length = 691

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 248/696 (35%), Positives = 371/696 (53%), Gaps = 30/696 (4%)

Query: 14  PQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKA 73
                S E   +  ++ D+    + S  ++YDAS +R+LEGLE VR+RPGMYIG T  + 
Sbjct: 3   NTEDNSMENSVEEHKLDDAQLDDSLSP-EHYDASDLRVLEGLEAVRIRPGMYIGSTGPRG 61

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133
           LHHL  E++DN++DE +AGYA+ IEV++  +  + VVD+GRGIPV+  P     S +E +
Sbjct: 62  LHHLVYEIVDNSVDEALAGYASHIEVTILPDNAIKVVDDGRGIPVDEVP-GEGVSGVETV 120

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           +T LHAGGKF    Y +SGGLHGVGISVVNALS  + + V RQ   ++Q +    P +PL
Sbjct: 121 MTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVEIEVRRQGFHWTQTYVDQHPTAPL 180

Query: 194 EKKEKVR--NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
           EK + +      GT +TF PD  IF     +D   L    Q  A+L+  +K   +  ++ 
Sbjct: 181 EKGKPMEEGESTGTSVTFWPDGAIFET-TTYDFETLRSRFQQMAFLNKGLKISLTDLRKP 239

Query: 252 AEKYGIPEKEE------------FYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKGTH 298
            E       E             + +  G+K Y+   +++R  +  E      E +    
Sbjct: 240 DEAGDEVTGENESTSEEKHQSVSYKYDHGIKDYVDYLVKSRKAVPVEPDVIDFEAEDLEI 299

Query: 299 RGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAI 355
             + E A+ W       + ++ NTI T EGGTHE G R ALT  + +YA       ++  
Sbjct: 300 GISAEIAMQWTVAYSEAVHTFANTISTTEGGTHEEGFRAALTSLVNRYAREKNILKEKDT 359

Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415
           ++  DD+      ++SV +  P+F GQTKTKL + +A+  V+  + +    +   +P EA
Sbjct: 360 NLSGDDVREGLTAVVSVKLTTPQFEGQTKTKLGNSEAKTFVQRVMTEKLGDWFDAHPSEA 419

Query: 416 TKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSA 474
             +++  IE S  R+  +K RE  R+ +I     +P KL DC  N     ELFIVEGDSA
Sbjct: 420 KNIIQKAIEASRARIAAKKARENTRRKSIFETAGMPDKLKDCQSNNPEECELFIVEGDSA 479

Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
           GGSA Q R+   QA+LPLRGKILN   A  +++  ++ I  L+ A+G      +    +R
Sbjct: 480 GGSAIQGRDPITQAILPLRGKILNTERASIDRMMKSETIESLITAVGGGYGEDFDLSKVR 539

Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHD 593
           Y KVIIM DADVDGAHIA+L LT F++ M  +I   ++++  PPL+R+     +  + + 
Sbjct: 540 YHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYIYVAMPPLYRLKWSKGAHDFVYT 599

Query: 594 EEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
           +  + ++L E K  G+       I R+KGLGEM   +L ET MD   R L ++ I     
Sbjct: 600 DAERDRVLAEGKAAGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQIHIED--- 656

Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
                 ++ + LMG + + R  FIQ  A     +  
Sbjct: 657 -AARADETFSMLMGDEVEPRRLFIQRNAHDARFIDA 691


>gi|148377448|ref|YP_001256324.1| topoisomerase IV subunit B [Mycoplasma agalactiae PG2]
 gi|148291494|emb|CAL58880.1| Topoisomerase IV subunit B [Mycoplasma agalactiae PG2]
          Length = 641

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 242/651 (37%), Positives = 353/651 (54%), Gaps = 32/651 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           ++ NYDASSI+ L+GLE VR RPGMYIG TD   LHHL  E++DN++DE +AG  N I V
Sbjct: 5   SNSNYDASSIQQLKGLEAVRKRPGMYIGSTDVNGLHHLIWEIVDNSIDEALAGETNEIIV 64

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +G + V DNGRGIPV   P    KS +E++ T LHAGGKF+   Y+ SGGLHGVG 
Sbjct: 65  ILKKDGSVVVSDNGRGIPVGKTP--SGKSAVELVFTELHAGGKFNEGAYKTSGGLHGVGS 122

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L   V R   I+   F  G  +          NKRGT I F P+ +IF   
Sbjct: 123 SVVNALSNKLKCLVYRDKHIYETIFENGDNIVQKTHIIGSTNKRGTSIQFWPNYEIFKK- 181

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
           A F+   + +  +  ++L   +      +            EEF +  G+K +++   ++
Sbjct: 182 AKFNFETIAERLRESSFLISNLSIKLIDE-------QSERSEEFKYSNGIKAFVEFINDS 234

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVAL 338
           ++ + +        K+  +   +E    + +  N  I S+ N + T +GGTHE GL+ A+
Sbjct: 235 KTALFNVYSF----KQVVNEIEIECGFQYTDGFNETILSFVNNVKTRDGGTHEIGLKSAI 290

Query: 339 TRGIKKYAELTQNKRAIS-IISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395
           T+    +A   +  +  +    +D+      +LSV I E   EF  QTK KL + +A+  
Sbjct: 291 TKTFNDFALDEKVLKGKNTFDGEDVREGLTVVLSVKIPEKYLEFVSQTKDKLGTPEAKSA 350

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA---IRKLRLPGK 452
           VE A+      ++ +N   A K+L+ +   S+ R   RK R   RKT      K  L GK
Sbjct: 351 VEEAVSKNLKTWITENKQIAKKILDKIKRASDSRESARKARLEARKTKSALKEKQILSGK 410

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L           ELF+VEGDSAGGSAK  R+R  QA+LPLRGK++N   A    I  N++
Sbjct: 411 LTPAQTKNVKEKELFLVEGDSAGGSAKSGRDRRYQAILPLRGKVINTEKARLIDILKNEE 470

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++ A+G      +    ++Y+KVIIMTDAD DGAHI  LLLTFF+  M  LIE+  +
Sbjct: 471 INTIINAIGAGIGQDFDINKIQYDKVIIMTDADTDGAHIQILLLTFFFIHMRRLIEEGKV 530

Query: 573 FLISPPLFRITQ---GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           ++  PPLF++T      + +YA DE   +++L+   K+     E+ R+KGLGEM A QL 
Sbjct: 531 YIALPPLFKLTINKAKKEILYAWDENELKELLQTKMKNA----EVQRYKGLGEMNADQLW 586

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL++V I          +  ++ LMG   + R ++I +  +F
Sbjct: 587 ETTMNPETRTLIQVRIQD----AALAERRVSTLMGDNVESRKEWINKNVNF 633


>gi|296137759|ref|YP_003645002.1| DNA gyrase subunit beta [Tsukamurella paurometabola DSM 20162]
 gi|296025893|gb|ADG76663.1| DNA gyrase, B subunit [Tsukamurella paurometabola DSM 20162]
          Length = 688

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 247/695 (35%), Positives = 376/695 (54%), Gaps = 49/695 (7%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
            +   A +S S NY A SI+ LEGLE VR RPGMYIG T  + LHH+  EV+DN++DE +
Sbjct: 2   AADNNAGKSGSGNYGADSIKQLEGLEAVRKRPGMYIGTTGPRGLHHMIWEVVDNSVDEAM 61

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AG+A  ++V L  +G + V+D+GRGIPV  H K     T++++LT+LHAGGKFD+  Y +
Sbjct: 62  AGHATRVDVKLRADGGVEVIDDGRGIPVAMHAK--GIPTVQLVLTSLHAGGKFDSDAYAV 119

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR----GIPLSPLEKKEKVRNKRGTR 206
           SGGLHGVGISVVNALS  + V +      + Q F         ++    K +   + GT 
Sbjct: 120 SGGLHGVGISVVNALSSRVEVEIDVDGFHWQQNFHWDDAKRDSVAEDLIKGEPTTRTGTT 179

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI--------------- 251
           + F  DPK+F +   +D   + +  Q  A+L+  +    + ++ +               
Sbjct: 180 VRFWADPKVFTETTHYDFETVSRRLQEMAFLNKGLTITLTDERPVAIEVPDEDITEEAPS 239

Query: 252 ----------AEKYGIPEKEEFYFPGGLKTYLQTKL--ENRSLISSEIFTGKTEKKGTHR 299
                     AE      +  F++P GL  Y++      ++S I + I + + ++KG   
Sbjct: 240 AHEEDVAAALAEVAPKKRERIFHYPDGLVDYVKHINARTSKSPIHASIISFEGKEKGH-- 297

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
             +E A+ W       + ++ NTI T EGGTHE G R ALT  +K YA+  +   ++   
Sbjct: 298 -EIEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRTALTGVVKAYAKDKKLVKEKDGE 356

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           +  DD+      ++SV + EP+F GQTKTKL + + +  V+   R+    +   NP +A 
Sbjct: 357 LSGDDIREGLAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKVCREQLQFWFDSNPADAK 416

Query: 417 KLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            +++     ++ RL  RK RE V RK+A     LPGKLADC  N     E++IVEGDSAG
Sbjct: 417 TIVQKAAASAQARLAARKARELVRRKSATDIGGLPGKLADCRSNDPDKCEVYIVEGDSAG 476

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           GSAK  R+   QA+LP+RGKI+NV  A  +K+  N ++  ++ A G     ++    LRY
Sbjct: 477 GSAKSGRDSMYQAILPIRGKIINVEKARIDKVLKNTEVQSIITAFGTGIHDEFDIAKLRY 536

Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT--QGTKSVYAHD 593
           +K+++M DADVDG HI++LLLT  ++ M  L+E  H++L  PPL+++   +G +  +A+ 
Sbjct: 537 KKIVLMADADVDGQHISTLLLTLLFRFMRPLVEHGHVYLAQPPLYKLKWQKGAEPEFAYS 596

Query: 594 EEHKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
           +  +  +L E  K GK   +   I R+KGLGEM A +L ET MD   R L +V ++    
Sbjct: 597 DAERDALLAEGLKSGKKINKDDGIQRYKGLGEMNAKELWETTMDPTVRVLKQVTLDD--- 653

Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
                 +  + LMG     R  FI   A  +  + 
Sbjct: 654 -AAAADELFSILMGEDVVARRSFIARNAKDVRFLD 687


>gi|311112567|ref|YP_003983789.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Rothia dentocariosa
           ATCC 17931]
 gi|310944061|gb|ADP40355.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Rothia dentocariosa
           ATCC 17931]
          Length = 676

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 245/675 (36%), Positives = 362/675 (53%), Gaps = 39/675 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y AS I +LEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +AGYA+ IEV++ 
Sbjct: 8   EYGASDITVLEGLEAVRKRPGMYIGSTTERGLHHLVYEVVDNSVDEALAGYASHIEVTIQ 67

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G + V D+GRGIPV+ HP   +KST+E+++T LHAGGKF    Y +SGGLHGVGISVV
Sbjct: 68  ADGGVRVQDDGRGIPVDEHP-TEHKSTVEVVMTVLHAGGKFGGGGYAVSGGLHGVGISVV 126

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS ++   V RQ   +   F+ G       ++ KV  K GT  TF PDP+IF     F
Sbjct: 127 NALSKKVITEVHRQGYSWHISFANGGIPDGPLRRGKVSQKTGTIQTFYPDPEIFET-VEF 185

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI-----------------------PE 259
           D   L    Q  A+L+  +    + +++  E                             
Sbjct: 186 DFETLRARFQQMAFLNKGLTISLTDERDQFEGGDEVAEEEDEKDKVLPLNRVGANAEGHR 245

Query: 260 KEEFYFPGGLKTYLQT-KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
              + +  GL  Y+      ++++I+ +I   + E        +E A+ W       + S
Sbjct: 246 TVTYRYDNGLFDYVHFLNAGSKTVINEDIIYFEAE-DTVRHMALEVAMQWTGSYKESVHS 304

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIR 375
           Y NTI T EGGTHE G R ALT  + +YA   +    +  ++  +D+      ++S+ I 
Sbjct: 305 YANTINTHEGGTHEEGFRAALTSLVNRYARENKLLRDKDDNLTGEDVREGLTAVISIKIS 364

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           EP+F GQTKTKL + +A+   +  + D    +  +NP  A  ++   I  ++ R+  RK 
Sbjct: 365 EPQFEGQTKTKLGNSEAKSFTQREINDHMADWFDRNPAVAKDVVRRAITAAQARMAARKA 424

Query: 436 REVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE  R+   +    +PGKL DC+      +E+++VEGDSAGGSA Q R+ ++QA+LPLRG
Sbjct: 425 RETTRRKGLLETSSMPGKLKDCASKDPSISEIYLVEGDSAGGSAVQGRDPNSQAILPLRG 484

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           KILNV  A  ++  +N +I  ++ A G      +  E  RY K+++M DADVDG HI +L
Sbjct: 485 KILNVERARLDRALSNAEIQAMITAFGTGIGDDFDLEKARYHKIVLMADADVDGQHITTL 544

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE 613
           LLT  ++ M  LIE  +++L  PPL+RI        Y   +  + + L   +   +   +
Sbjct: 545 LLTLLFRFMRPLIEAGYVYLAQPPLYRIKWSNAPHDYVFSDAERDEALARGQAKNQRLPK 604

Query: 614 ---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADER 670
              I R+KGLGEM  ++L +T MD  +RTLL+V++              + LMG   + R
Sbjct: 605 DNGIQRYKGLGEMDYTELWDTTMDPQRRTLLQVKMED----AAAADQIFSVLMGEDVEAR 660

Query: 671 FKFIQERASFIDDVG 685
             FIQ+ A  I  + 
Sbjct: 661 RDFIQQNAKDIRFLD 675


>gi|269314031|gb|ACZ36917.1| DNA gyrase B [Mycobacterium massiliense]
          Length = 651

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 242/664 (36%), Positives = 363/664 (54%), Gaps = 47/664 (7%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y A SI ILEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +AGYA  +EV++  
Sbjct: 1   YSADSITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNSVDEAMAGYATTVEVTMLA 60

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G + V D+GRGIPV  H       T+++++T LHAGGKFD+ +Y +SGGLHGVGISVVN
Sbjct: 61  DGGIQVKDDGRGIPVAMH--ASGIPTVDVVMTQLHAGGKFDSDSYAVSGGLHGVGISVVN 118

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS +L V + R    + Q ++R  P +  +       K GT + F  DP+IF     +D
Sbjct: 119 ALSTKLEVEILRDGFEWQQVYTRSEPGTLQK--GAATKKTGTTVRFWADPEIFET-TTYD 175

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-------------------------YGIP 258
              + +  Q +A+L+  +    + ++    +                             
Sbjct: 176 FETVARRLQEQAFLNKGLTIKLTDERVSDSEVTDEVVSDTAEAPKNAEEQAAESSAPHKV 235

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +   F++P GL  +++     +S I + I     + +G     VE A+ W       + +
Sbjct: 236 KNRVFHYPDGLVDFVKHINRTKSAIHTTIVDFSGKGEGH---EVEIAMQWNAGYSESVHT 292

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMISAVGILSVFIR 375
           + NTI T EGGTHE G R ALT  + KY   +    ++  ++  DD+      ++SV + 
Sbjct: 293 FANTINTHEGGTHEEGFRAALTSVVNKYAKEKKLLKEKDSNLTGDDIREGLAAVISVKVG 352

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           EP+F GQTKTKL + + +  V+    +   H+   NP +A  ++   +  ++ R+  RK 
Sbjct: 353 EPQFEGQTKTKLGNTEVKSFVQKVCNEQLQHWFDSNPADAKTVVNKAVSSAQARIAARKA 412

Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE V RK+A     LPGKLADC       +EL++VEGDSAGGSAK  R+   QA+LPLRG
Sbjct: 413 RELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKSGRDSMFQAILPLRG 472

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           KI+NV  A  +++  N ++  ++ ALG     ++    LRY K+++M DADVDG HI++L
Sbjct: 473 KIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIAKLRYHKIVLMADADVDGQHISTL 532

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIE 613
           LLT  ++ M  L+E  H+FL  PPL+++     +  +A+ +  +  ++E   K GK KI 
Sbjct: 533 LLTLLFRFMRPLVEHGHIFLAQPPLYKLKWQRSQPEFAYSDRERDGLMEAGLKAGK-KIN 591

Query: 614 ----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669
               I R+KGLGEM A +L ET MD + R L +V ++          +  + LMG   + 
Sbjct: 592 KDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELFSILMGEDVEA 647

Query: 670 RFKF 673
           R  F
Sbjct: 648 RRSF 651


>gi|317509459|ref|ZP_07967077.1| DNA gyrase, subunit B [Segniliparus rugosus ATCC BAA-974]
 gi|316252288|gb|EFV11740.1| DNA gyrase, subunit B [Segniliparus rugosus ATCC BAA-974]
          Length = 678

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 244/688 (35%), Positives = 364/688 (52%), Gaps = 43/688 (6%)

Query: 29  IPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDE 88
                +    +    Y ASSI ILEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE
Sbjct: 2   SEKKNSEKKNAEKSTYGASSITILEGLEAVRKRPGMYIGSTGERGLHHLVQEVVDNSVDE 61

Query: 89  VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148
            +AGYA  ++V+L  +G + VVD+GRGIPV  H       T+E++LT LHAGGKFD+ +Y
Sbjct: 62  AMAGYATRVDVTLLADGGIEVVDDGRGIPVAPH--ASGPPTVEVVLTVLHAGGKFDSDSY 119

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
            +SGGLHGVGISVVNALS +L V +      ++Q +    P   ++       + GT + 
Sbjct: 120 AVSGGLHGVGISVVNALSYKLEVEIDVDGHHWTQAYDNAKPGPLVK--GAAVKRTGTTVR 177

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE------------------ 250
           F  DPKIF     +D   + +  Q  A+L+  +    +  +E                  
Sbjct: 178 FWADPKIFET-TRYDFDTIARRLQEMAFLNKGLIITLTDLREGQIDASDEGEGVDTAELV 236

Query: 251 -----IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
                   K    ++ E+++PGGL  Y+      ++ I + I + + + +G     VE A
Sbjct: 237 RSEGDDEAKAPAVKRREYHYPGGLHDYVAHINRTKTAIHTSIVSFEGKGEGH---EVEIA 293

Query: 306 IAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDL 362
           + W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++  ++  DD+
Sbjct: 294 MQWNSGYTESVYTFANTINTHEGGTHEEGFRAALTSTVNKYARDKKILKEKDKNLSGDDV 353

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
                 ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP EA  ++   
Sbjct: 354 REGLSAVISVKLSEPQFEGQTKTKLGNTEIRSFVQKICNEELAHWFEANPSEAKVIVSKA 413

Query: 423 IERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
            + ++ R   +  R  V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  
Sbjct: 414 QQAAQARDAAQNARALVRRKSATDIGGLPGKLADCRSKDPSKSEVYIVEGDSAGGSAKSG 473

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541
           RN   QA+LP+RGKI+NV  A  +++  N ++  ++ A G     ++    LRY K+++M
Sbjct: 474 RNSEFQAILPIRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDLAKLRYHKIVLM 533

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKI 600
            DADVDG HI++LLLT  ++ M  L+E  H++L +PPL+++     +  YA+ +  +  +
Sbjct: 534 ADADVDGQHISTLLLTLLFRFMRPLVEHGHVYLAAPPLYKLKWQRAEPEYAYSDRERDSL 593

Query: 601 LE---EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           L       K       I R+KGLGEM A +L ET MD + RTL  V ++          +
Sbjct: 594 LSIGLGSGKKINKDDGIQRYKGLGEMNAKELWETTMDPDTRTLRLVTMDD----AAAADE 649

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
             + LMG     R  FI   A  +  + 
Sbjct: 650 LFSILMGEDVPARRGFIARNAKDVRFLD 677


>gi|300742652|ref|ZP_07072673.1| DNA gyrase, B subunit [Rothia dentocariosa M567]
 gi|300381837|gb|EFJ78399.1| DNA gyrase, B subunit [Rothia dentocariosa M567]
          Length = 676

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 244/675 (36%), Positives = 361/675 (53%), Gaps = 39/675 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y AS I +LEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +AGYA+ IEV++ 
Sbjct: 8   EYGASDITVLEGLEAVRKRPGMYIGSTTERGLHHLVYEVVDNSVDEALAGYASHIEVTIQ 67

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G + V D+GRGIPV+ HP   +KST+E+++T LHAGGKF    Y +SGGLHGVGISVV
Sbjct: 68  ADGGVRVQDDGRGIPVDEHP-TEHKSTVEVVMTVLHAGGKFGGGGYAVSGGLHGVGISVV 126

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS ++   V RQ   +   F+ G       ++ K   K GT  TF PDP+IF     F
Sbjct: 127 NALSKKVITEVHRQGYSWHISFANGGIPDGPLRRGKASQKTGTIQTFYPDPEIFET-VEF 185

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI-----------------------PE 259
           D   L    Q  A+L+  +    + +++  E                             
Sbjct: 186 DFETLRARFQQMAFLNKGLTISLTDERDQFEGGDEVAEEEDEKDKVLPLNRVGANAEGHR 245

Query: 260 KEEFYFPGGLKTYLQT-KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
              + +  GL  Y+      ++++I+ +I   + E        +E A+ W       + S
Sbjct: 246 TVTYRYDNGLFDYVHFLNAGSKTVINEDIIYFEAE-DTVRHMALEVAMQWTGSYKESVHS 304

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIR 375
           Y NTI T EGGTHE G R ALT  + +YA   +    +  ++  +D+      ++S+ I 
Sbjct: 305 YANTINTHEGGTHEEGFRAALTSLVNRYARENKLLRDKDDNLTGEDVREGLTAVISIKIS 364

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           EP+F GQTKTKL + +A+   +  + D    +  +NP  A  ++   I  ++ R+  RK 
Sbjct: 365 EPQFEGQTKTKLGNSEAKSFTQREINDHMADWFDRNPAVAKDVVRRAITAAQARMAARKA 424

Query: 436 REVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE  R+   +    +PGKL DC+      +E+++VEGDSAGGSA Q R+ ++QA+LPLRG
Sbjct: 425 RETTRRKGLLETSSMPGKLKDCASKDPSISEIYLVEGDSAGGSAVQGRDPNSQAILPLRG 484

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           KILNV  A  ++  +N +I  ++ A G      +  E  RY K+++M DADVDG HI +L
Sbjct: 485 KILNVERARLDRALSNAEIQAMITAFGTGIGDDFDLEKARYHKIVLMADADVDGQHITTL 544

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE 613
           LLT  ++ M  LIE  +++L  PPL+RI        Y   +  + + L   +   +   +
Sbjct: 545 LLTLLFRFMRPLIEAGYVYLAQPPLYRIKWSNAPHDYVFSDAERDEALARGQAKNQRLPK 604

Query: 614 ---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADER 670
              I R+KGLGEM  ++L +T MD  +RTLL+V++              + LMG   + R
Sbjct: 605 DNGIQRYKGLGEMDYTELWDTTMDPQRRTLLQVKMED----AAAADQIFSVLMGEDVEAR 660

Query: 671 FKFIQERASFIDDVG 685
             FIQ+ A  I  + 
Sbjct: 661 RDFIQQNAKDIRFLD 675


>gi|255513419|gb|EET89685.1| DNA topoisomerase (ATP-hydrolyzing) [Candidatus Micrarchaeum
           acidiphilum ARMAN-2]
          Length = 635

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 248/650 (38%), Positives = 371/650 (57%), Gaps = 23/650 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            +NY A  I +L G + +R RP MYIG T      HL  EVIDN++DE +AGY   I V 
Sbjct: 3   ENNYGARDIIVLSGPQGIRKRPAMYIGSTGSSGFIHLLYEVIDNSVDEAMAGYCKNILVK 62

Query: 101 LDGNGFL---TVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           L     +    V D+GRGIPV+  PK   K  +E+I+T++HAG KF+N  Y++SGGLHGV
Sbjct: 63  LGRENGVDYAEVTDDGRGIPVDIMPK-EGKPAVEVIMTSIHAGAKFENKAYKVSGGLHGV 121

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G++VVNALS    V V R + ++   FSRG+  S LE+     N+ GT I F PD +IF 
Sbjct: 122 GLTVVNALSSHTEVIVKRNSKVYRITFSRGVLTSGLEEIGTCGNETGTTIKFVPDTEIFS 181

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               FD  +L +  +  ++LS  +K      +E + +        FY   G+  ++    
Sbjct: 182 VDR-FDTIQLTERLRYLSFLSPGLKIKLVDLREDSSEETN-----FYSENGIVDFINYLR 235

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337
             +S +S  I   K++        +++   +   N E+ S+ N I T EGGTH +G R A
Sbjct: 236 GGKSDVSKPIIISKSDNSIKVDIGLQYVDGY---NEELLSFVNKIKTPEGGTHVTGFRGA 292

Query: 338 LTRGIKKYAELTQNKRA-ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           LTR I  Y +    K+  ++I  +D     + +++V ++ PEF GQTK KL +++ +  V
Sbjct: 293 LTRAITNYVQKNSKKKTSVNIEGEDTREGLIAVVAVMMQNPEFEGQTKEKLGNVNIKSVV 352

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLAD 455
           EN       +Y  +NP EA K++E V   +E R   ++ RE+ RK ++     LPGKLAD
Sbjct: 353 ENIAYTALSYYFEENPGEANKVIEKVSRAAEAREAAKRARELTRKKSLFEGAVLPGKLAD 412

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C+++     E+FIVEG+SA GS+KQ R+R  QA+LPLRGKILNV  A  EKI NN ++  
Sbjct: 413 CTESDPDKAEIFIVEGESAAGSSKQGRDRFYQAILPLRGKILNVEKATDEKIFNNAELHL 472

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +V A G   +  +  E+LRY+K+I++TDADVDG+HI +LLLTFFY+ +  LIE+ ++++ 
Sbjct: 473 MVTAFGTGIKEGFNIENLRYKKIILLTDADVDGSHIKTLLLTFFYRYLRPLIERGYIYIA 532

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL++++ G +  YA+ +     +++E      GK  + R+KGLGEM   QL ET MD 
Sbjct: 533 QPPLYKVSHGREVKYAYSDSELSALMKE----NNGKGNVQRYKGLGEMNPEQLWETTMDP 588

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            KR + R+ I       +      N LMG     R KF++E ++ +  + 
Sbjct: 589 QKRIIKRISI----KDAQIADAIFNILMGMDVVPRRKFLEEHSTEVSFLD 634


>gi|269314033|gb|ACZ36918.1| DNA gyrase B [Mycobacterium bolletii]
 gi|269314039|gb|ACZ36921.1| DNA gyrase B [Mycobacterium massiliense]
          Length = 651

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 242/664 (36%), Positives = 363/664 (54%), Gaps = 47/664 (7%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y A SI ILEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +AGYA  +EV++  
Sbjct: 1   YSADSITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNSVDEAMAGYATTVEVTMLA 60

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G + V D+GRGIPV  H       T+++++T LHAGGKFD+ +Y +SGGLHGVGISVVN
Sbjct: 61  DGGIQVKDDGRGIPVAMH--ASGIPTVDVVMTQLHAGGKFDSDSYAVSGGLHGVGISVVN 118

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS +L V + R    + Q ++R  P +  +       K GT + F  DP+IF     +D
Sbjct: 119 ALSTKLEVEILRDGFEWQQVYTRSEPGTLQK--GAATKKTGTTVRFWADPEIFET-TTYD 175

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-------------------------YGIP 258
              + +  Q +A+L+  +    + ++    +                             
Sbjct: 176 FETVARRLQEQAFLNKGLTIKLTDERVSDSEVTDEVVSDTAEAPKNAEEQAAESSAPHKV 235

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +   F++P GL  +++     +S I + I     + +G     VE A+ W       + +
Sbjct: 236 KNRVFHYPDGLVDFVKHINRTKSAIHTTIVDFSGKGEGH---EVEIAMQWNAGYSESVHT 292

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMISAVGILSVFIR 375
           + NTI T EGGTHE G R ALT  + KY   +    ++  ++  DD+      ++SV + 
Sbjct: 293 FANTINTHEGGTHEEGFRAALTSVVNKYAKEKKLLKEKDSNLTGDDIREGLAAVISVKVG 352

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           EP+F GQTKTKL + + +  V+    +   H+   NP +A  ++   +  ++ R+  RK 
Sbjct: 353 EPQFEGQTKTKLGNTEVKSFVQKVCNEQLQHWFDSNPADAKTVVNKAVSSAQARIAARKA 412

Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE V RK+A     LPGKLADC       +EL++VEGDSAGGSAK  R+   QA+LPLRG
Sbjct: 413 RELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKSGRDSMFQAILPLRG 472

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           KI+NV  A  +++  N ++  ++ ALG     ++    LRY K+++M DADVDG HI++L
Sbjct: 473 KIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIAKLRYHKIVLMADADVDGQHISTL 532

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIE 613
           LLT  ++ M  L+E  H+FL  PPL+++     +  +A+ +  +  ++E   K GK KI 
Sbjct: 533 LLTLLFRFMRPLVEHGHIFLAQPPLYKLKWQRTQPEFAYSDRERDGLMEAGLKAGK-KIN 591

Query: 614 ----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669
               I R+KGLGEM A +L ET MD + R L +V ++          +  + LMG   + 
Sbjct: 592 KDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELFSILMGEDVEA 647

Query: 670 RFKF 673
           R  F
Sbjct: 648 RRSF 651


>gi|71083152|ref|YP_265871.1| DNA topoisomerase (ATP-hydrolyzing) chain B (DNA gyrase B)
           [Candidatus Pelagibacter ubique HTCC1062]
 gi|71062265|gb|AAZ21268.1| DNA topoisomerase (ATP-hydrolyzing) chain B (DNA gyrase B)
           [Candidatus Pelagibacter ubique HTCC1062]
          Length = 685

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 268/697 (38%), Positives = 387/697 (55%), Gaps = 64/697 (9%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           +  + Y A SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I
Sbjct: 2   NNKNTYQADSIKVLKGLEAVRKRPGMYIGDTDDGTGLHHMVYEVVDNSIDEALAGHCKNI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +G +TV D+GRGIPV+ H K    S  E+I+T LHAGGKFD+ +Y++SGGLHGV
Sbjct: 62  DVKINSDGTITVRDDGRGIPVDMH-KGEKMSAAEVIMTQLHAGGKFDHDSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS++L + + R    +  +F  G   +PL+   K +   GT+ITF P  +IF 
Sbjct: 121 GVSVVNALSEKLKLEIDRDGNRYFIEFKDGASKAPLKVIGKSKE-TGTQITFLPSKEIFS 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F  + ++K  +  A+L+  +K   +   +  EK  +     F F GG+  ++    
Sbjct: 180 S-IKFTPSIIIKRMRELAFLNKGIKITVNDLNQKKEKIIV-----FKFDGGVLEFVDFLD 233

Query: 278 ENRS--------LISSEIFTGKTEKKGT-HRGTVEWAIAWCEENPEITSYCNTILTDEGG 328
           E R          +  +    + +K       +++W  ++     +I  Y N I   +GG
Sbjct: 234 EKREKLVNKTGNDLFKKPIYIEGKKDNIEIECSLKWNASY---GEDIYPYTNNIYQKDGG 290

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH  G R ALTR I KYA       K  ++I  DD+      ++S  I +P+F+ QTK K
Sbjct: 291 THLLGFRSALTRVINKYATEHNLLKKNKLTISGDDIKEGLTCVISAKIPDPKFSSQTKDK 350

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIR 445
           LVS + +  VE+ + +    +  QNP  +  +L  V++ +  R   RK RE   RK A+ 
Sbjct: 351 LVSSEVRMIVESIVSEKLSIWFDQNPTLSKIILAKVMQAALARDVARKARENVRRKGALE 410

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA----- 500
              LPGKLADC      GTELFIVEGDSAGGSAKQ RNRSNQAVLPLRGKILN       
Sbjct: 411 LSGLPGKLADCQIGKQEGTELFIVEGDSAGGSAKQGRNRSNQAVLPLRGKILNTYVEEIV 470

Query: 501 -------------SAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADV 546
                        +    K+ ++ +++ L+ ALG   + +  + +DLRY K+IIMTDADV
Sbjct: 471 LKKNSNRDGSEHRTKSLSKMMSSNEVVTLINALGLDPKVEDIDLKDLRYGKIIIMTDADV 530

Query: 547 DGAHIASLLLTFF-YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKI----- 600
           DG+HI +LLLTFF  +    LIE  H++L  PPLF+I +GTK +Y  DE+  +       
Sbjct: 531 DGSHIRALLLTFFNNKPFNKLIENGHVYLAQPPLFKINKGTKGIYIKDEKELEDYILKNN 590

Query: 601 --LEEFKK----------HGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648
             L++ KK            K ++ I RFKGLGEM   +L  T +D   R LL+V+ +KD
Sbjct: 591 KELQKIKKGTKEFTKAYEDEKSRMSIQRFKGLGEMNPEELWNTTLDPETRNLLQVQYSKD 650

Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +   +D    I+ LMG     R  FI   A  + ++ 
Sbjct: 651 IKKDQD---LIHTLMGNDVALRKDFIVSNAINVQNLD 684


>gi|167758061|ref|ZP_02430188.1| hypothetical protein CLOSCI_00399 [Clostridium scindens ATCC 35704]
 gi|167663958|gb|EDS08088.1| hypothetical protein CLOSCI_00399 [Clostridium scindens ATCC 35704]
          Length = 666

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 241/660 (36%), Positives = 345/660 (52%), Gaps = 35/660 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  + YDA SI ILEGLE VR RPGMYIG    K L+HL  E++DNA+DE +AGY + I 
Sbjct: 28  AKKNTYDADSISILEGLEAVRKRPGMYIGSVSTKGLNHLIYEMVDNAVDEHLAGYCSEIR 87

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+L+ +G  T+ DNGRG+PV+ H      S   ++ TTLHAGGKFD+S Y+ SGGLHGVG
Sbjct: 88  VTLEKDGSATISDNGRGVPVDLH--ATGVSAERVVYTTLHAGGKFDDSAYKTSGGLHGVG 145

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGTRITFRPDP 213
            SVVNALS  + V V+R   I   ++ RG P+  LE        K R   GT++ F PD 
Sbjct: 146 SSVVNALSTYMDVEVSRDGYIHHDRYERGKPVIELEDGLLPTIGKTRK-TGTKVNFLPDD 204

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF     F A  +       AYL+  +   +   +         E   ++ P G+  ++
Sbjct: 205 TIFEK-TRFRAEEVKSRMHETAYLNPDLTIIFEDRR-----GSETEHIVYHEPEGILGFI 258

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHES 332
           +     +  +       K E  G     VE A  +  E +  +  +CN I   EGGTH +
Sbjct: 259 EDLNSKKEAVHEP-VYFKGESDGI---EVEVAFQYVNEFHENVLGFCNNIYNAEGGTHLT 314

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G +   T  I +Y+       ++  +    D+      I+S+   +P F GQTKTKL + 
Sbjct: 315 GFKTTFTTVINQYSRELGILKEKDANFTGADIRNGMTAIISIKHPDPRFEGQTKTKLDNP 374

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
           DA +       D    Y  +N     K++    + ++ R    + +              
Sbjct: 375 DAAKACSKVTNDEIIRYFDRNLDNLKKVISCAEKAAKIRKTEERAKTNLLTKQKYSFDSN 434

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLA+C    A   E+FIVEGDSAGGSAK AR+R  QA+LP+RGKILNV  A  +K+  N
Sbjct: 435 GKLANCESKDAGKCEIFIVEGDSAGGSAKTARDRMYQAILPIRGKILNVEKASIDKVLAN 494

Query: 511 QQIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
            +I  ++ A GC       + +    LRY+K+IIM DADVDGAHI++LLLT FY+ M +L
Sbjct: 495 AEIKTMINAFGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPEL 554

Query: 567 IEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           I + H+++  PPL++   +  +  Y +D+    K LE ++K   G   + R+KGLGEM A
Sbjct: 555 IYEGHVYIAMPPLYKAMPKKGEEEYLYDD----KALERYRKTHDGPFTLQRYKGLGEMDA 610

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL ET ++   R L  VEI     +   T+     LMG++   R  FI E A+  + + 
Sbjct: 611 QQLWETTLNPETRMLKLVEIEDARMASGVTE----MLMGSEVPPRRTFIYENATEAE-LD 665


>gi|115435866|ref|NP_001042691.1| Os01g0268300 [Oryza sativa Japonica Group]
 gi|75285839|sp|Q5NBJ3|GYRB_ORYSJ RecName: Full=DNA gyrase subunit B, chloroplastic/mitochondrial;
           Flags: Precursor
 gi|56783730|dbj|BAD81142.1| putative DNA gyrase B subunit [Oryza sativa Japonica Group]
 gi|56783751|dbj|BAD81163.1| putative DNA gyrase B subunit [Oryza sativa Japonica Group]
 gi|113532222|dbj|BAF04605.1| Os01g0268300 [Oryza sativa Japonica Group]
          Length = 729

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 236/670 (35%), Positives = 373/670 (55%), Gaps = 24/670 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86
                S A   +  +  Y A+++++LE L+ VR RPGMYIG T  + LHHL  E++DNA+
Sbjct: 72  ASTAASEAMQEKRVAGEYTAANVQVLEALDGVRTRPGMYIGSTGSRGLHHLVYEILDNAV 131

Query: 87  DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA--GGKFD 144
           DE  AGYA  ++V L G+  ++V DNGRGIP + HP+   KS +E +LT +HA       
Sbjct: 132 DEAQAGYATKVDVILHGDNSVSVTDNGRGIPTDIHPQ-TKKSCVETVLTLMHAGGKFGGS 190

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE---KVRN 201
            S Y +SGGLHGVG+SVVNALS+ L VTV R    + Q +SRG  ++ L  +    +  +
Sbjct: 191 KSGYTVSGGLHGVGLSVVNALSEALEVTVWRDGKEYRQNYSRGKAITMLTSRTLSDESSS 250

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           ++GTRI F PD  IF     FD   +    +  A+L+  +    + +    E     +  
Sbjct: 251 RQGTRIRFWPDKHIFTTTMDFDFNTIAGRIRELAFLNPELTIALTKE----EDDLQVQHN 306

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
           E+ + GGL  Y++    ++  +       + E  G     V         +  +  Y N+
Sbjct: 307 EYCYAGGLVEYVKWLNTDKKSLHDP-IAFRKEMDGIT-VDVSLQWCSDSYSDTVLGYANS 364

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I T +GGTH  GL+ +LTR I  +A+ ++    + IS+  + +      I++V +  PEF
Sbjct: 365 IRTIDGGTHIDGLKTSLTRTINNFAKKSKTLKDKDISLSGEHVREGMTCIIAVKVPNPEF 424

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREV 438
            GQTKT+L + + +R VE ++++    YL  +P     +L   +         +R +  V
Sbjct: 425 EGQTKTRLGNPEVRRIVEQSVQENLTEYLELHPDVLDSILSKSLNALKAALAAKRARELV 484

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
             K+ ++   LPGKLADC+ +    +E+FIVEGDSAGGSAKQ R+R  QA+LPLRGKILN
Sbjct: 485 RTKSVLKSSSLPGKLADCASSDPEESEIFIVEGDSAGGSAKQGRDRKFQAILPLRGKILN 544

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLT 557
           +       +  N++I +L+ ALG   + +   ++ LRY K++I+TDADVDGAHI +LLLT
Sbjct: 545 IERRDEAALYKNEEIQNLIVALGLGVKGEDFNKEALRYHKIVILTDADVDGAHIRTLLLT 604

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
           FF++    L ++  +++  PPL+++ +G ++ Y +D+   ++++  F  +      I RF
Sbjct: 605 FFFRYQKALFDEGCIYVGVPPLYKVERGKQAHYCYDDADLKELVNTFPTN--ASYHIQRF 662

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           KGLGEM+ +QL ET MD  +R L ++++        +     + LMGT+ D R + IQ  
Sbjct: 663 KGLGEMMPAQLWETTMDPERRMLKQLKVED----AAEANVVFSSLMGTRVDVRKQLIQNA 718

Query: 678 ASFI--DDVG 685
           AS +  + + 
Sbjct: 719 ASMVNLEHLD 728


>gi|325265376|ref|ZP_08132100.1| DNA topoisomerase IV subunit B [Clostridium sp. D5]
 gi|324029377|gb|EGB90668.1| DNA topoisomerase IV subunit B [Clostridium sp. D5]
          Length = 640

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 248/657 (37%), Positives = 353/657 (53%), Gaps = 35/657 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + YDA SI +LEGLE VR RPGMYIG    K L+HL  E++DNA+DE +AGY   I V+L
Sbjct: 5   NTYDADSISVLEGLEAVRKRPGMYIGSVSTKGLNHLIYEIVDNAVDEHLAGYCTQIHVTL 64

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G  T+ DNGRG+PV  H K    S   I+ TTLHAGGKFD+S Y+ SGGLHGVG SV
Sbjct: 65  EKDGSATIEDNGRGVPVGMHKK--GVSAERIVYTTLHAGGKFDDSAYKTSGGLHGVGSSV 122

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGTRITFRPDPKIF 216
           VNALS  + V V+R+  +   +F RGIP+  LE        K R   GT++ F PD  IF
Sbjct: 123 VNALSTYMDVQVSREGAVHHDRFERGIPVIELEDGLLPVIGKTRK-TGTKVNFLPDDTIF 181

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                F A  +       AYL+  +   +   +        PE   ++ P G+  +++  
Sbjct: 182 EK-TRFRAEEVKSRLHETAYLNPDLTIIFDDKR-----MESPEHIVYHEPDGILGFIKDL 235

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLR 335
            + +  +   I+  K E +G     VE A+ +  E +  +  +CN I   EGGTH +G +
Sbjct: 236 NQKKETLHEPIYY-KGESEGI---EVEVALQYVNEFHENVLGFCNNIYNAEGGTHLTGFK 291

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
              T  + +YA       ++  +    D+      I+S+   +P F GQTKTKL + DA 
Sbjct: 292 TTFTTVMNQYARELGILKEKDANFTGADIRNGMTAIVSIKHPDPRFEGQTKTKLDNPDAA 351

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
           +       D    Y  +N      +L    + ++ R    K +              GKL
Sbjct: 352 KATGKVTGDEIVLYFDRNLETLKSVLSCAEKAAKIRKTEEKAKTNLLTKQKYSFDSNGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           A+C    A   E+FIVEGDSAGGSAK ARNR+ QA+LP+RGKILNV  A  +K+  N +I
Sbjct: 412 ANCESRDATKCEIFIVEGDSAGGSAKTARNRNYQAILPIRGKILNVEKASIDKVLANAEI 471

Query: 514 MDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
             ++ A GC       + +    LRY+K+IIM DADVDGAHI++LLLT FY+ M +LI +
Sbjct: 472 KTMINAFGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIYE 531

Query: 570 KHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
            H+++  PPL+++  +  +  Y +D+    K LE++++   G   + R+KGLGEM A QL
Sbjct: 532 GHVYIAMPPLYKVMPKKGEEEYLYDD----KALEKYRRMHDGPFTLQRYKGLGEMDAQQL 587

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            ET +D   R L  VEI     +   T+     LMGT+   R  FI E A+  + + 
Sbjct: 588 WETTLDPETRLLKLVEIEDARMASSVTE----MLMGTEVPPRRMFIYENAADAE-LD 639


>gi|302670820|ref|YP_003830780.1| DNA topoisomerase IV subunit B ParE [Butyrivibrio proteoclasticus
           B316]
 gi|302395293|gb|ADL34198.1| DNA topoisomerase IV subunit B ParE [Butyrivibrio proteoclasticus
           B316]
          Length = 640

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 238/657 (36%), Positives = 346/657 (52%), Gaps = 35/657 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + YDASSI +LEGLE VR RPGMYIG    + L+HL  E++DNA+DE +AG+   I V+L
Sbjct: 5   EQYDASSITVLEGLEAVRKRPGMYIGSVTTRGLNHLVYEIVDNAVDEHLAGFCTQIHVTL 64

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G  TV DNGRGIPV  H K    +   ++LT LHAGGKFDN+ Y+ SGGLHGVG SV
Sbjct: 65  EADGSATVEDNGRGIPVGMHAK--GITAERVVLTMLHAGGKFDNNAYKTSGGLHGVGSSV 122

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLE----KKEKVRNKRGTRITFRPDPKIFG 217
           VNALS  ++V + +   I+   + RGIP + L            + GT I F PD  IF 
Sbjct: 123 VNALSTRMNVRIKKDGFIYEDSYERGIPTTKLVNGLLTPVGSTRETGTTINFLPDDTIFE 182

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F    +       AYL+  +   +   +   E+Y       F+ P G+  +++   
Sbjct: 183 K-TRFKEDDIKSRLHETAYLNPSLTIIFQDKRPGVEEYIE-----FHEPDGITGFIKDMN 236

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLRV 336
           +++  +  ++ +   E +G     VE A  +  E + E+  +CN I   EGGTH +G + 
Sbjct: 237 KSKEAVH-DVVSFSGESEGV---EVEVAFQYVNEFHEEVLGFCNNIYNAEGGTHLTGFKT 292

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
             T  I +YA        +  +    D+      ++S+   +P F GQTKTKL + DA +
Sbjct: 293 MFTNIINQYARELNILKDKDNNFTGTDVRNGMTAVISIKHPDPRFEGQTKTKLDNQDAAK 352

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454
            V     D    +  +N      ++    + ++ R    K +              GKLA
Sbjct: 353 VVSKITNDEMTRFFDRNLETLKAIIGCAEKAAKIRKTEEKAKTNMLTKQKYSFDSNGKLA 412

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           +C    A   E+FIVEGDSAGGSAK AR+R+ QA+LP+RGKILNV  A  +K+  N +I 
Sbjct: 413 NCISKDASKCEIFIVEGDSAGGSAKMARDRNYQAILPIRGKILNVEKASIDKVLANAEIK 472

Query: 515 DLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
            ++ A GC       + +    LRY+K+IIM DADVDG HI++LLLT FY+ M +LI Q 
Sbjct: 473 TMINAFGCGFSEGYGNDFDINKLRYDKIIIMADADVDGEHISTLLLTLFYRFMPELIYQG 532

Query: 571 HLFLISPPLFRI--TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           H+++  PPL++    +G +  Y +D+      L +++   KG   + R+KGLGEM A QL
Sbjct: 533 HVYVAMPPLYKAMPARGKEE-YLYDD----SALAKYRATHKGNFTLQRYKGLGEMDAQQL 587

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            ET +D  +R L  VEI       K        LMG     R +FI + A+  + + 
Sbjct: 588 WETTLDPERRMLKAVEIED----AKMASQITELLMGVDVPPRREFIHQHATDAE-LD 639


>gi|26554100|ref|NP_758034.1| DNA topoisomerase IV subunit B [Mycoplasma penetrans HF-2]
 gi|26454108|dbj|BAC44438.1| DNA topoisomerase IV subunit B [Mycoplasma penetrans HF-2]
          Length = 631

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 236/647 (36%), Positives = 356/647 (55%), Gaps = 29/647 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           ++Y  S I++LEGL+PVR RPGMYIG TD++ LHHL  E++DNA+DEV+AG  + I+++L
Sbjct: 2   NSYKESDIKVLEGLDPVRKRPGMYIGSTDQRGLHHLIWEILDNAVDEVMAGVCDTIKMTL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G  +V DNGRGIP   HPK    ST++ + TTLHAGGKF +S Y++SGGLHGVG SV
Sbjct: 62  HRDGSFSVEDNGRGIPTGIHPK-TKMSTVDTVFTTLHAGGKFSDSAYKMSGGLHGVGSSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  L VTV R   I+  ++  G  +          N+ GT + F PD  IF +   
Sbjct: 121 VNALSSYLTVTVKRDGKIYESQYVDGGKIKQKSHIIGSTNRTGTTVRFLPDASIFKN-IA 179

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F  + + +  Q  ++L   +K  +       E     + + F    G+  ++     N+ 
Sbjct: 180 FSPSIIFERVQETSFLFKGLKIIF-------ENEYTRKVDTFLAQNGISEFVSFISSNQK 232

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
            IS  I+    E+        ++  +  E      S+ N++ T EGGTHE+G + ALT  
Sbjct: 233 TISEVIYIEGKEQDIEAEIAFQYNDSNSETF---VSFANSVKTKEGGTHETGFKTALTET 289

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397
           +  YA   +    +  +    D     V ++SV I E    + GQTK KL + +A   V+
Sbjct: 290 LNDYARKWKLLKDKEKNFEGSDFREGLVCVISVRIPERLISYEGQTKNKLFTQEAYSVVK 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP--GKLAD 455
           N ++  F ++L +N  +A  ++E      E R+  +K RE  ++   +K      GKL  
Sbjct: 350 NIVKTKFTYWLEENKKDAKTIIEKAYLSREARIAAKKAREEVKQLKGQKKEKILSGKLTP 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C       TELF+VEGDSAGGSAK  R++  QA+LPL+GK++NV  A  + +  N++I  
Sbjct: 410 CQSKDKTITELFLVEGDSAGGSAKLGRDKRYQAILPLKGKVINVEKAMLKDLLKNEEIST 469

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ ++G    S +   D++Y K+IIMTDAD DGAHI  LLLTFFY+ M +LIE   +++ 
Sbjct: 470 IISSIGGSIGSDFCLPDVKYSKIIIMTDADTDGAHIRILLLTFFYRYMKELIESGRVYIA 529

Query: 576 SPPLFRI--TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
            PPL++   T+  K  Y  ++   +++     K      EI R+KGLGEM A QL +T M
Sbjct: 530 LPPLYKFTNTKNKKEFYVWEDYELEEL-----KKDNPNYEIQRYKGLGEMNADQLWDTTM 584

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           D   R L++V I         T+  ++ LMG  + +R ++I +   F
Sbjct: 585 DPETRQLIQVSIED----AALTERRVSILMGDDSSKRKEWITDNVDF 627


>gi|15790024|ref|NP_279848.1| DNA gyrase subunit B [Halobacterium sp. NRC-1]
 gi|10580452|gb|AAG19328.1| DNA gyrase subunit B [Halobacterium sp. NRC-1]
          Length = 611

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 240/627 (38%), Positives = 357/627 (56%), Gaps = 22/627 (3%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIG TD + LHHL  EV+DN++DE +AGY + I+V+L  +G ++V D+GRGIPV  H +
Sbjct: 1   MYIGSTDARGLHHLVYEVVDNSIDEALAGYCDRIDVTLHDDGSVSVTDDGRGIPVATHEE 60

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
           + ++  +E+ILT LHAGGKFD  +Y++SGGLHGVG+SVVNALS+ L V V+R    + ++
Sbjct: 61  Y-DRPAVEVILTVLHAGGKFDAKSYQVSGGLHGVGVSVVNALSERLAVEVSRDGARYREQ 119

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           F RG P++ L+      +  GT I FRPD +IF     +D + L    +  A+L+  V+ 
Sbjct: 120 FERGEPVTDLQHVGD-SDDSGTLIRFRPDSEIFETT-AYDFSTLENRLRELAFLNSGVEI 177

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
             + ++        P +  F + GG++ +++   E R+ +  ++   + E  G    +VE
Sbjct: 178 TLTDER-----GDEPTQSTFEYEGGIREFVEYLNETRNALHDDVIYFQGEDDGI---SVE 229

Query: 304 WAIA-WCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK---RAISIIS 359
            A+    +      ++ N I T EGGTH +G + ALTR +  YA            ++  
Sbjct: 230 IAMQASEDVQSSTHAFANNINTREGGTHLTGFKTALTRTVNDYANDNNLLSELDGENLTG 289

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD+      ++SV   +P+F GQTKTKL + + +  VE A+ D    Y  +NP  A  ++
Sbjct: 290 DDIREGLTAVISVKHPDPQFEGQTKTKLGNSEVRGIVERAVNDGLGTYFEENPATAKAVV 349

Query: 420 EWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
              +E ++ R   +K  E   RK+A+    LPGKLADC        ELF+VEGDSAGGSA
Sbjct: 350 RTAVEAAKARKAAKKAEELTRRKSALGSTSLPGKLADCQSKAPEDAELFVVEGDSAGGSA 409

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538
           KQ RN   QA+LPL GKILNV     ++I  + ++  ++ ALG     ++  ++LRYE +
Sbjct: 410 KQGRNPGFQAILPLGGKILNVEKHRLDRILEHDELRHIITALGTGIGDEFDIDELRYENI 469

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQ 598
           I+MTDADVDGAHI +LLLTFFY+ M  L+E  +++   PPL+RI     +  A  E  ++
Sbjct: 470 IMMTDADVDGAHIRTLLLTFFYRHMKPLLEAGYVYAAQPPLYRIRYRGNTYDAMTEADRE 529

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           +I+EE         ++ RFKGLGEM   QL +T MD   R L R+ +             
Sbjct: 530 RIVEEQCNGNPT--QVQRFKGLGEMNPQQLWDTTMDPENRILKRITVED----AAAADKM 583

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            + LMG   + R +FIQERA   + V 
Sbjct: 584 FSVLMGDAVEPRKQFIQERAGDAEWVD 610


>gi|229824236|ref|ZP_04450305.1| hypothetical protein GCWU000282_01540 [Catonella morbi ATCC 51271]
 gi|229786590|gb|EEP22704.1| hypothetical protein GCWU000282_01540 [Catonella morbi ATCC 51271]
          Length = 708

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 238/658 (36%), Positives = 355/658 (53%), Gaps = 38/658 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY   +I+ILEGLE VR RPGMYIG TD++ LHHL  E++DNA+DE ++G+A+ I+V++ 
Sbjct: 23  NYGDDAIQILEGLEAVRKRPGMYIGSTDQRGLHHLLYEIVDNAVDEALSGFADHIKVTIC 82

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G + V DNGRG+PV  H     K T+E++ T LHAGGKF    Y+ +GGLHGVG SVV
Sbjct: 83  QDGSVKVQDNGRGLPVGLH--ASGKPTIEVVFTVLHAGGKFGQGGYKSAGGLHGVGASVV 140

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           NALS  + V V R    +  +F  G +P++ L K +   ++K GT + F PD KIFG  A
Sbjct: 141 NALSTWVQVEVDRDGYTYQMRFENGGVPVTKLIKTKNSNKSKHGTTVHFMPDSKIFG-HA 199

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
             ++  + +  +  A+L   +      ++       I   E F+F  GL  ++    E +
Sbjct: 200 TINSETIAERLRESAFLLKDLTIELIDER-------IDYHEVFHFSQGLIDFITYLNEEK 252

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
             +         E +G     +++A  + +     I S+ N + T  GGTHE G++  +T
Sbjct: 253 DTLGDIAGFA-GEVEG---FEIDFAFQYNDGYSETILSFANNVRTGGGGTHEVGMKTGMT 308

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395
           +    YA        +  ++   D+      ++S+ I E   +F GQTK KL +  A+  
Sbjct: 309 KAFNDYARKVGLLKDKDKNLEGSDVREGLTAVISLRIPEEYLQFEGQTKEKLGTPKARPL 368

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGK 452
           VEN + +    YL +N   +  +L   I+  E R   RK R+  R  + ++ +   + GK
Sbjct: 369 VENFVNEKMTAYLNENGNFSQMILRKAIKARETREAARKARDAARSGSKKQAQERAISGK 428

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L       A   EL++VEGDSAGGSAK  RNR  QA+LPLRGK++N   A  + I  N++
Sbjct: 429 LTKAQSKDASKNELYLVEGDSAGGSAKLGRNRQYQAILPLRGKVINTEKASMQDILKNEE 488

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++  +G    + +  E + Y KVIIMTDAD DGAHI  LLLTFFY+ M  L+E   +
Sbjct: 489 INTMIYTIGAGVGADFDLESVNYNKVIIMTDADTDGAHIQVLLLTFFYRYMKPLLEAGKV 548

Query: 573 FLISPPLFRITQG--TK--SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           +L  PPLF++++G   K    YA  +E     + +  K       + R+KGLGEM A QL
Sbjct: 549 YLAMPPLFKVSKGAGKKQVVEYAWTDEELASKIAKVGK----GYVLQRYKGLGEMNADQL 604

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
            +T M+   R L+RV I+         +  +  LMG K + R K+I+   SF   + T
Sbjct: 605 WDTTMNPETRLLIRVTIDDG----ARAERRLTTLMGNKVEPRRKWIERHVSFT--LDT 656


>gi|84497177|ref|ZP_00995999.1| DNA topoisomerase IV subunit B [Janibacter sp. HTCC2649]
 gi|84382065|gb|EAP97947.1| DNA topoisomerase IV subunit B [Janibacter sp. HTCC2649]
          Length = 719

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 246/712 (34%), Positives = 370/712 (51%), Gaps = 36/712 (5%)

Query: 3   DDSIDLFSTLPPQSQGSSEKLKKSGEIP-------DSPAFANQSASDN--YDASSIRILE 53
           D + D  S   P +  +      +            +P  +  + +D+  YDAS+I++LE
Sbjct: 14  DSTADAVSDTSPNASAAESAALPAALPTAPEEGALTAPTGSVSAVADDATYDASAIQVLE 73

Query: 54  GLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNG 113
           GL+ VR RPGMYIG T E+ LHHL  E++DNA+DE +AG+A+ I+V+L GNG + V DNG
Sbjct: 74  GLDAVRKRPGMYIGSTGERGLHHLVWEIVDNAVDESLAGHADTIDVTLLGNGGVQVKDNG 133

Query: 114 RGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTV 173
           RGIP   + +    ST+E++LT LHAGGKF    Y++SGGLHGVG SVVNALS  L   V
Sbjct: 134 RGIPTGMN-EAYGVSTVELVLTQLHAGGKFGGGGYKVSGGLHGVGSSVVNALSTRLIAEV 192

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
            +   ++  +F  G  L+PLE+  +  +   T   +  D     +   +D   +    Q 
Sbjct: 193 RQLGHVWRMEFDHGERLAPLEQVGETADHGSTITYWADD--QIFETVEYDYETIRARFQQ 250

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEE------------FYFPGGLKTYLQTKLENRS 281
            A+L+  +    + ++         E +             + +PGGL  Y+   + ++ 
Sbjct: 251 YAFLNKGLTINLTDERVQESAADEDESDSVEGNESRKRTISYCYPGGLIDYVTHLVASKK 310

Query: 282 LISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
                      E +       +E A+ W       + +Y NT+ T EGGTHE G R ALT
Sbjct: 311 SEPVHPDIISIEVEDKARELNLELAMQWTTAYSESVHTYANTVNTHEGGTHEEGFRAALT 370

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           + I  +A        +  ++  DD+      ++SV + EP+F GQTKTKL + + +  V+
Sbjct: 371 KMINDFARKQNQLKDKDENLTGDDVREGLTAVISVKLGEPQFEGQTKTKLGNSEVKGFVQ 430

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
            A+ D F  +L ++P E  +++   I+    RL  RK RE  RK  +    LPGKL DC 
Sbjct: 431 RAMTDSFGDWLERHPNEGKEIVRKAIQAQTARLAARKAREATRKRVLESGGLPGKLRDCQ 490

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +E++IVEGDSAGGSA + RN  NQA+LP+RGKILNV  A  +K   NQ++  L+
Sbjct: 491 AKDPAVSEVYIVEGDSAGGSAVRGRNPFNQAILPIRGKILNVERARLDKALANQEVQALI 550

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A G      +  +  RY K++IM DADVDG HI +LLLT  ++ M  LIE  +++L  P
Sbjct: 551 SAFGTGIGEDFNIDKARYHKIVIMADADVDGMHIRTLLLTLLFRFMKPLIEAGYVYLAQP 610

Query: 578 PLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAM 633
           PL+RI        +A  +  +  +  E +  G+   +   I R+KGLGEM   +L ET M
Sbjct: 611 PLYRIKWSNAPHEFAFTDRERDALTAEGQSKGRRMPKDNGIQRYKGLGEMDYQELWETTM 670

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D + R LL++ ++          +  + LMG   + R  FIQ  A  +  + 
Sbjct: 671 DPDHRVLLQITLDD----AAAADEVFSVLMGEDVESRRSFIQRNARDVRFLD 718


>gi|77411131|ref|ZP_00787484.1| DNA gyrase, B subunit [Streptococcus agalactiae CJB111]
 gi|77162854|gb|EAO73812.1| DNA gyrase, B subunit [Streptococcus agalactiae CJB111]
          Length = 620

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 241/635 (37%), Positives = 364/635 (57%), Gaps = 25/635 (3%)

Query: 60  MRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119
           MRPGMYIG T ++ LHHL  E++DN++DE +AG+A  I+V ++ +  +TVVD+GRGIPV+
Sbjct: 1   MRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFAGHIKVYIEPDNSITVVDDGRGIPVD 60

Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179
              K   +  +E + T LHAGGKF    Y++SGGLHGVG SVVNALS +L V V +   +
Sbjct: 61  IQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSTQLDVKVYKNGKV 119

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
             Q++ RG+ ++ LE      +  GT + F PDP+IF +   FD  +L K  Q  A+L+ 
Sbjct: 120 HYQEYQRGVVVNDLEIIGDT-DLSGTTVHFTPDPEIFTETTVFDFDKLAKRIQELAFLNR 178

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            ++   S  +E  E         +++ GG+ +Y++   EN+ +I         E  G   
Sbjct: 179 GLRISISDKREGQEVEKE-----YHYEGGIGSYVEFINENKEVIFENPIYTDGELDGI-- 231

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
            +VE A+ +       + S+ N I T EGGTHE G R ALTR I  YA+  +   +   +
Sbjct: 232 -SVEVAMQYTTGYQETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKILKENEDN 290

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           +  +D+      ++SV    P+F GQTKTKL + +  +       + F+ +L++NP  A 
Sbjct: 291 LTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFNRFLLENPQVAK 350

Query: 417 KLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
           K++E  I  S+ R+  ++ RE   +K+ +    LPGKLADCS N A   ELFIVEGDSA 
Sbjct: 351 KIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNAEMNELFIVEGDSAE 410

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           GSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I  L  A+G    + +    +RY
Sbjct: 411 GSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGFGADFDVSKVRY 470

Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHD- 593
           +K++IMTDADVDGAHI +LLLT  Y+ M  ++E  ++++  PP++ +  G++   Y    
Sbjct: 471 QKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKAYIQPG 530

Query: 594 ---EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
              EE  ++ L+ +   G+ K  + R+KGLGEM   QL ET MD   R + RV ++    
Sbjct: 531 VNQEEELRQALDTYS-SGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVSVDD--- 586

Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              +     + LMG + + R +FI+  A +  ++ 
Sbjct: 587 -AAEADKIFDMLMGDRVEPRREFIEANAVY-SNLD 619


>gi|330718555|ref|ZP_08313155.1| DNA topoisomerase IV subunit B [Leuconostoc fallax KCTC 3537]
          Length = 708

 Score =  564 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 246/660 (37%), Positives = 367/660 (55%), Gaps = 33/660 (5%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
            ++ Y++ SI+ILEGLE VR RPGMYIG TD + LHHL  E++DNA+DE + G+ + I V
Sbjct: 3   KNNEYNSDSIKILEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALGGFGDEINV 62

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  N  +TV D GRG+PV  H     K T E+ILT LHAGGKF    Y  SGGLHGVG 
Sbjct: 63  TIHENNAITVQDFGRGMPVGMHE--SGKPTPEVILTVLHAGGKFGQGGYATSGGLHGVGS 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           SVVNALS+ L VT+ R+   + + F   G P+  L    K +   GT +TF+PD  IF  
Sbjct: 121 SVVNALSESLQVTIVREGHKWEEDFVDGGKPVGTLRDLGKTKEHTGTILTFKPDANIFST 180

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              +    L +  +  A+L   VK   + ++           E +++  GL+ ++    E
Sbjct: 181 TV-YKYETLAERLRESAFLMSGVKFTLTDER-----VDPIRHEAYHYDKGLEAFVGFLNE 234

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVA 337
           ++  I S   T + +++G     V+ A  + +   E   S+ N + T +GGTHE+G R A
Sbjct: 235 DKGTIGSI-MTFEGQQEGII---VDVAAQYNDGYSETLLSFVNNVRTQDGGTHEAGFRSA 290

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
            T+   +YA  T     +  ++   D+      ++S+ + E   +F GQTK KL + +A+
Sbjct: 291 WTKAFNEYARRTNLLKDKDKNLEGSDVREGLSAVISLRVPEQYLQFEGQTKDKLGTPEAR 350

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LP 450
             V+  + +    +L++N      L+   +   E R   RK R+ +R    +  +   L 
Sbjct: 351 GIVDAIVNETLSRFLMENGDFGQNLIRKALRAREAREAARKARDESRTGRSKNAKERLLS 410

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL+      A   ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N
Sbjct: 411 GKLSPAQSKNAAKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLADILKN 470

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  L+ A+G    + ++  D  ++K+IIMTDAD DGAHI +LLLTFFY+ M  LIE+ 
Sbjct: 471 EEISTLIYAIGGGVGADFKVADAAFDKIIIMTDADDDGAHIQTLLLTFFYKYMRPLIEEG 530

Query: 571 HLFLISPPLFRITQGTKSV---YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
            +++  PPL+R+  G+K     +A   +  + I  +      G+ E++RFKGLGEM AS 
Sbjct: 531 KIYIALPPLYRVKFGSKKHDDQFAWTNDELETITSQT----TGRYELTRFKGLGEMNASL 586

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF-IDDVGT 686
           L ET MD   RTL+RV+I+  +      +  +  LMG K + R  +I+   SF +D+ G+
Sbjct: 587 LWETTMDPESRTLIRVKIDDGV----LAEKRVTTLMGDKVEPRRNWIEANVSFTLDEAGS 642


>gi|168067741|ref|XP_001785766.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662596|gb|EDQ49430.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 642

 Score =  564 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 238/652 (36%), Positives = 357/652 (54%), Gaps = 28/652 (4%)

Query: 50  RILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTV 109
           ++LEGLE VR RPGMYIG T  K LHHL  EV+DNA+DE  AG+A+ +++ +  +G +++
Sbjct: 2   QVLEGLEAVRKRPGMYIGSTGAKGLHHLVYEVLDNAIDEAQAGFASTVDIVMHTDGSVSI 61

Query: 110 VDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST--YEISGGLHGVGISVVNALSD 167
            DNGRGIP + HP    KS LE +LT LHAGGKF      Y +SGGLHGVGISVVNALS+
Sbjct: 62  SDNGRGIPTDVHP-VTGKSALETVLTVLHAGGKFGGDNSGYSVSGGLHGVGISVVNALSE 120

Query: 168 ELHVTVARQNTIFSQKFSRGIPLSP---LEKKEKVRNKRGTRITFRPDPK-----IFGDK 219
            + VTV R    + Q F  G  +S           + + GT + F PD +     +F   
Sbjct: 121 RVDVTVWRNGHEYKQSFEFGKSVSHLSGSRLPRDQKGRTGTLVKFLPDKQGKSFLMFTST 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             FD + +   T+  A+L+ +V      D    EK        ++F GGL  Y+     +
Sbjct: 181 TEFDYSTISGRTRELAFLNPQVTIYLKQDHANPEKI---RSNTYHFSGGLSEYVLWLNND 237

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
           +  +   I   + ++      +++W          I  Y N+I T +GGTH  G++ A+T
Sbjct: 238 KERLHEPISIHRKKEGIIIDVSLQWCA--DSYTDTIIGYANSIRTSDGGTHLDGIKAAVT 295

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +       +   ++  ++  D        ++SV +  PEF GQTKT+L + + +R V+
Sbjct: 296 RTLNTLGRKAKILKEKDENLSGDHAREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRRLVD 355

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
            A+++    YL Q+P     +L   ++        ++ +  V RK  ++   LPGKL+DC
Sbjct: 356 QAVQELVTEYLEQHPNTLEAILSKALQAFRAAMAAKKARELVRRKNVLKSSMLPGKLSDC 415

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E+FIVEGDSAGGSAKQ R+R  QA+LPLRGKILN+       I  NQ+I +L
Sbjct: 416 SCTDPKNSEIFIVEGDSAGGSAKQGRDRRYQAILPLRGKILNIERKDDAAIYKNQEIQNL 475

Query: 517 VQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           + ALG   + +   +D LRY K+II+TDADVDGAHI +LLLTFF++    L E   +++ 
Sbjct: 476 ILALGLGVKGEEFSKDLLRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFESGCIYVG 535

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+++ +G ++ Y  +E   + +L+ F  +      I RFKGLGEM+  QL ET +D 
Sbjct: 536 VPPLYKVERGKQAHYCFNEADLKNLLKTFPSN--ASYNIQRFKGLGEMMPQQLWETTLDP 593

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF--IDDVG 685
            +R L  + +        +     + LMG K + R + IQ  AS   ++++ 
Sbjct: 594 TQRMLKLLTLED----AAEASMMFSTLMGDKVEPRKELIQNNASRMKLENLD 641


>gi|291525298|emb|CBK90885.1| DNA topoisomerase IV subunit B [Eubacterium rectale DSM 17629]
          Length = 640

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 241/660 (36%), Positives = 345/660 (52%), Gaps = 35/660 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +    YD  SI ILEGLE VR RPGMYIG    K L+HL  E++DN++DE +AG  + I 
Sbjct: 2   AKKQTYDEKSIAILEGLEAVRKRPGMYIGSVTTKGLNHLIYEIVDNSVDEHLAGACDTIR 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+L+ NG  TV DNGRGIPV  H K    S   ++ +TLHAGGKFDNS Y+ SGGLHGVG
Sbjct: 62  VTLEKNGSCTVEDNGRGIPVGMHAK--GVSAARVVFSTLHAGGKFDNSVYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK-----EKVRNKRGTRITFRPDP 213
            SVVNALS  + V ++R   I   ++ +G+P+  LE        K +   GTRI F PDP
Sbjct: 120 SSVVNALSTYMDVEISRDGFIHHDRYEKGVPVVELENGLLPTLGKTKK-TGTRINFLPDP 178

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IF     F    +    +  AYL+ ++   +   +  A ++       ++ P G+  ++
Sbjct: 179 EIFEK-TRFKEEDVKNRLKETAYLNPKLTIIYEDKRGDATEHIE-----YHEPEGIIGFV 232

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHES 332
           +   +N   +  ++     E +      VE A  +  E +  I  +CN I   EGG H +
Sbjct: 233 KDLNKNIEKLH-DVIYFTGESENI---KVEVAFQYTSEFHENILGFCNNIYNSEGGAHIT 288

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G + A T  I  YA        +  +    D+      ++SV   +P F GQTKTKL + 
Sbjct: 289 GFKTAFTGIINSYARELGILKDKDANFNGADVRNGMTAVVSVKHPDPRFEGQTKTKLDNQ 348

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
           DA R       D    Y  +N      ++    + ++ R    K +              
Sbjct: 349 DANRATAKVTNDEVPLYFDKNLEVLKTVISCAEKAAKIRKAEEKAKTNLLTKQKFSFDSN 408

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLA+C    A   E+FIVEGDSAGGSAK ARNR  QA++P+RGKILNV  A  +K+  N
Sbjct: 409 GKLANCESRDASKCEIFIVEGDSAGGSAKMARNRMFQAIMPIRGKILNVEKASIDKVLAN 468

Query: 511 QQIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
            +I  ++ A GC       + +    LRY+K+IIM DADVDGAHI++LLLT F++ M +L
Sbjct: 469 AEIKTMINAFGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFFRFMPEL 528

Query: 567 IEQKHLFLISPPLFR-ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           I + H+++  PPL++ I    +  Y +D+    K     +K   GK  + R+KGLGEM A
Sbjct: 529 ILEGHVYVAMPPLYKAIPSKGEEKYLYDDAELDKY----RKTHTGKFTLQRYKGLGEMDA 584

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL +T ++   R L R+EI       +   D  + LMG+    R +FI E A   + + 
Sbjct: 585 DQLWDTTLNPATRMLKRIEIEDG----RLANDVTSLLMGSDVPPRKEFIYEHAHDAE-LD 639


>gi|91762418|ref|ZP_01264383.1| DNA topoisomerase (ATP-hydrolyzing) chain B (DNA gyrase B)
           [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718220|gb|EAS84870.1| DNA topoisomerase (ATP-hydrolyzing) chain B (DNA gyrase B)
           [Candidatus Pelagibacter ubique HTCC1002]
          Length = 685

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 268/697 (38%), Positives = 386/697 (55%), Gaps = 64/697 (9%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
             +  Y A SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I
Sbjct: 2   KNNSTYQADSIKVLKGLEAVRKRPGMYIGDTDDGTGLHHMVYEVVDNSIDEALAGHCKNI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +G +TV D+GRGIPV+ H K    S  E+I+T LHAGGKFD+ +Y++SGGLHGV
Sbjct: 62  DVKINSDGTITVRDDGRGIPVDMH-KGEKMSAAEVIMTQLHAGGKFDHDSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS++L + + R    +  +F  G   +PL+   K +   GT+ITF P  +IF 
Sbjct: 121 GVSVVNALSEKLKLEIDRDGNRYFIEFKDGASKAPLKVIGKSKE-TGTQITFLPSKEIFS 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F  + ++K  +  A+L+  +K   +   +  EK  +     F F GG+  ++    
Sbjct: 180 S-IKFTPSIIIKRMRELAFLNKGIKITVNDLNQKKEKIIV-----FKFDGGVLEFVDFLD 233

Query: 278 ENRS--------LISSEIFTGKTEKKGT-HRGTVEWAIAWCEENPEITSYCNTILTDEGG 328
           E R          +  +    + +K       +++W  ++     +I  Y N I   +GG
Sbjct: 234 EKREKLVNKTGNDLFKKPIYIEGKKDNIEIECSLKWNASY---GEDIYPYTNNIYQKDGG 290

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH  G R ALTR I KYA       K  ++I  DD+      ++S  I +P+F+ QTK K
Sbjct: 291 THLLGFRSALTRVINKYATEHNLLKKNKLTISGDDIKEGLTCVISAKIPDPKFSSQTKDK 350

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIR 445
           LVS + +  VE+ + +    +  QNP  +  +L  V++ +  R   RK RE   RK A+ 
Sbjct: 351 LVSSEVRMIVESIVSEKLSIWFDQNPTLSKIILAKVMQAALARDVARKARENVRRKGALE 410

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA----- 500
              LPGKLADC      GTELFIVEGDSAGGSAKQ RNRSNQAVLPLRGKILN       
Sbjct: 411 LSGLPGKLADCQIGKQEGTELFIVEGDSAGGSAKQGRNRSNQAVLPLRGKILNTYVEEIV 470

Query: 501 -------------SAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADV 546
                        +    K+ ++ +++ L+ ALG   + +  + +DLRY K+IIMTDADV
Sbjct: 471 LKKNSNRDGSEHRTKSLSKMMSSNEVVTLINALGLDPKVEDIDLKDLRYGKIIIMTDADV 530

Query: 547 DGAHIASLLLTFF-YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKI----- 600
           DG+HI +LLLTFF  +    LIE  H++L  PPLF+I +GTK +Y  DE+  +       
Sbjct: 531 DGSHIRALLLTFFNNKPFNKLIENGHVYLAQPPLFKINKGTKGIYIKDEKELEDYILKNN 590

Query: 601 --LEEFKK----------HGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648
             L++ KK            K ++ I RFKGLGEM   +L  T +D   R LL+V+ +KD
Sbjct: 591 KELQKIKKGTKEFTKAYEDEKSRMSIQRFKGLGEMNPEELWNTTLDPETRNLLQVQYSKD 650

Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +   +D    I+ LMG     R  FI   A  + ++ 
Sbjct: 651 IKKDQD---LIHTLMGNDVALRKDFIVSNAINVQNLD 684


>gi|116618459|ref|YP_818830.1| DNA topoisomerase IV subunit B [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097306|gb|ABJ62457.1| DNA topoisomerase IV subunit B [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 687

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 243/658 (36%), Positives = 361/658 (54%), Gaps = 33/658 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           ++YD+ SI+ILEGLE VR RPGMYIG TD + LHHL  E++DNA+DE + GY N I V++
Sbjct: 5   NHYDSDSIKILEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALGGYGNEIRVTI 64

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             N  +TV D GRG+P+  H     K T E+ILT LHAGGKF    Y  SGGLHGVG SV
Sbjct: 65  HDNNAITVQDFGRGMPIGMHE--SGKPTPEVILTVLHAGGKFGQGGYATSGGLHGVGSSV 122

Query: 162 VNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VNALS+ L VT+ R+   + ++F + G P+  L    K +   GT +TF+PD  IF    
Sbjct: 123 VNALSESLTVTIVREGHKWQEEFVNGGNPVGTLRDLGKTKEPTGTTVTFKPDATIFSATV 182

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +    L +  +  ++L   VK   + ++           EE+++  GL+ ++    E++
Sbjct: 183 -YKFDILAERLRESSFLMSGVKFTLTDER-----VDPVRVEEYHYEKGLEAFVGFLNEDK 236

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I     T + E++      V+ A  + +   E   S+ N + T +GGTHE G R A T
Sbjct: 237 ETIGPV-MTFEGEQESI---VVDVAAQYNDGYSETLLSFVNNVRTQDGGTHEVGFRTAWT 292

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395
           +   +YA        +  ++   D+      ++S+ + E   +F GQTK KL + +A+  
Sbjct: 293 KAFNEYARKVNLLKDKDKNLEGTDVREGLSAVISLRVPEQFLQFEGQTKDKLGTPEARGI 352

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGK 452
           V++ + +    +L++N      L+   +   E R   R+ R+ +R    +  +     GK
Sbjct: 353 VDSVVNETLGRFLMENGDFGQNLIRKALRAREAREAARRARDESRTGKTKGAKDRLLSGK 412

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LA      A   ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N++
Sbjct: 413 LAPAQSKNADKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLADILKNEE 472

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  L+ A+G    + ++ ED  + K+IIMTDAD DGAHI +LLLTFFY+ M  LIE   +
Sbjct: 473 ISTLIYAIGGGVGTDFKVEDASFNKIIIMTDADDDGAHIQTLLLTFFYKYMRPLIEAGRV 532

Query: 573 FLISPPLFRIT---QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           ++  PPL+R+    +  +  +A   +     LE        + E++RFKGLGEM A  L 
Sbjct: 533 YIALPPLYRVKYSSKKIEDQFAWTNDE----LESITSQSDARYELTRFKGLGEMNAPLLW 588

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF-IDDVGT 686
           ET MD   RTL+RV+I+  +      +  +  LMG K D R ++I+    F +D+ G+
Sbjct: 589 ETTMDPESRTLIRVKIDDAV----LAEKRVTTLMGDKVDPRREWIEANVHFTLDEAGS 642


>gi|238924637|ref|YP_002938153.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium rectale ATCC
           33656]
 gi|238876312|gb|ACR76019.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium rectale ATCC
           33656]
          Length = 640

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 240/660 (36%), Positives = 345/660 (52%), Gaps = 35/660 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +    YD  SI ILEGLE VR RPGMYIG    K L+HL  E++DN++DE +AG  + I 
Sbjct: 2   AKKQTYDEKSIAILEGLEAVRKRPGMYIGSVTTKGLNHLIYEIVDNSVDEHLAGACDTIR 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+L+ NG  TV DNGRGIPV  H K    S   ++ +TLHAGGKFDNS Y+ SGGLHGVG
Sbjct: 62  VTLEKNGSCTVEDNGRGIPVGMHAK--GVSAARVVFSTLHAGGKFDNSVYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK-----EKVRNKRGTRITFRPDP 213
            SVVNALS  + V ++R   I   ++ +G+P+  LE        K +   GT+I F PDP
Sbjct: 120 SSVVNALSTYMDVEISRDGYIHHDRYEKGVPVVELENGLLPTLGKTKK-TGTKINFLPDP 178

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IF     F    +    +  AYL+ ++   +   +  A ++       ++ P G+  ++
Sbjct: 179 EIFEK-TRFREEDVKNRLKETAYLNPKLTIIYEDKRGDATEHIE-----YHEPEGIVGFV 232

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHES 332
           +   +N   +  ++     E +      VE A  +  E +  I  +CN I   EGG H +
Sbjct: 233 KDLDKNIEKLH-DVIYFTGESENI---KVEVAFQYTSEFHENILGFCNNIYNSEGGAHIT 288

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G + A T  I  YA        +  +    D+      ++SV   +P F GQTKTKL + 
Sbjct: 289 GFKTAFTGIINSYARELGILKDKDANFNGADVRNGMTAVVSVKHPDPRFEGQTKTKLDNQ 348

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
           DA R       D    Y  +N      ++    + ++ R    K +              
Sbjct: 349 DANRATAKVTNDEVPLYFDKNLEVLKTVISCAEKAAKIRKAEEKAKTNLLTKQKFSFDSN 408

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLA+C    A   E+FIVEGDSAGGSAK ARNR  QA++P+RGKILNV  A  +K+  N
Sbjct: 409 GKLANCESRDASKCEIFIVEGDSAGGSAKMARNRMFQAIMPIRGKILNVEKASIDKVLAN 468

Query: 511 QQIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
            +I  ++ A GC       + +    LRY+K+IIM DADVDGAHI++LLLT F++ M +L
Sbjct: 469 AEIKTMINAFGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFFRFMPEL 528

Query: 567 IEQKHLFLISPPLFR-ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           I + H+++  PPL++ I    +  Y +D+    K     +K   GK  + R+KGLGEM A
Sbjct: 529 ILEGHVYVAMPPLYKAIPSKGEEKYLYDDAELDKY----RKTHTGKFTLQRYKGLGEMDA 584

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL +T ++   R L R+EI       +   D  + LMG+    R +FI E A   + + 
Sbjct: 585 DQLWDTTLNPATRMLKRIEIEDG----RLANDVTSLLMGSDVPPRKEFIYEHAHDAE-LD 639


>gi|291529243|emb|CBK94829.1| DNA topoisomerase IV subunit B [Eubacterium rectale M104/1]
          Length = 640

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 241/660 (36%), Positives = 345/660 (52%), Gaps = 35/660 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +    YD  SI ILEGLE VR RPGMYIG    K L+HL  E++DN++DE +AG  + I 
Sbjct: 2   AKKQTYDEKSIAILEGLEAVRKRPGMYIGSVTTKGLNHLIYEIVDNSVDEHLAGACDTIR 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+L+ NG  TV DNGRGIPV  H K    S   ++ +TLHAGGKFDNS Y+ SGGLHGVG
Sbjct: 62  VTLEKNGSCTVEDNGRGIPVGMHAK--GVSAARVVFSTLHAGGKFDNSVYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK-----EKVRNKRGTRITFRPDP 213
            SVVNALS  + V ++R   I   ++ +G+P+  LE        K +   GTRI F PDP
Sbjct: 120 SSVVNALSTYMDVEISRDGYIHHDRYEKGVPVVELENGLLPTLGKTKK-TGTRINFLPDP 178

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IF     F    +    +  AYL+ ++   +   +  A ++       ++ P G+  ++
Sbjct: 179 EIFEK-TRFKEEDVKNRLKETAYLNPKLTIIYEDKRGDATEHIE-----YHEPEGIVGFV 232

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHES 332
           +   +N   +  ++     E +      VE A  +  E +  I  +CN I   EGG H +
Sbjct: 233 KDLDKNIEKLH-DVIYFTGESEDI---KVEVAFQYTSEFHENILGFCNNIYNSEGGAHIT 288

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G + A T  I  YA        +  +    D+      ++SV   +P F GQTKTKL + 
Sbjct: 289 GFKTAFTGIINSYARELGILKDKDANFNGADVRNGMTAVVSVKHPDPRFEGQTKTKLDNQ 348

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
           DA R       D    Y  +N      ++    + ++ R    K +              
Sbjct: 349 DANRATAKVTNDEVPLYFDKNLEVLKTVISCAEKAAKIRKAEEKAKTNLLTKQKFSFDSN 408

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLA+C    A   E+FIVEGDSAGGSAK ARNR  QA++P+RGKILNV  A  +K+  N
Sbjct: 409 GKLANCESRDASKCEIFIVEGDSAGGSAKMARNRMFQAIMPIRGKILNVEKASIDKVLAN 468

Query: 511 QQIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
            +I  ++ A GC       + +    LRY+K+IIM DADVDGAHI++LLLT F++ M +L
Sbjct: 469 AEIKTMINAFGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFFRFMPEL 528

Query: 567 IEQKHLFLISPPLFR-ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           I + H+++  PPL++ I    +  Y +D+    K     +K   GK  + R+KGLGEM A
Sbjct: 529 ILEGHVYVAMPPLYKAIPSKGEEKYLYDDAELDKY----RKTHTGKFTLQRYKGLGEMDA 584

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL +T ++   R L R+EI       +   D  + LMG+    R +FI E A   + + 
Sbjct: 585 DQLWDTTLNPATRMLKRIEIEDG----RLANDVTSLLMGSDVPPRKEFIYEHAHDAE-LD 639


>gi|98990338|gb|ABF60237.1| DNA gyrase subunit B [Entomoplasma freundtii]
          Length = 608

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 247/624 (39%), Positives = 358/624 (57%), Gaps = 22/624 (3%)

Query: 67  GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           G T +  LHHL  E++DN++DE +AGYAN I V++  +G + V DNGRGIPV        
Sbjct: 1   GSTSKAGLHHLVWEILDNSIDEAMAGYANRIVVTITKDGEVVVEDNGRGIPVGVQ-HDTG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           +S LE++ T LHAGGKFD+ +Y+ISGGLHGVG SVVNALS+ + V V R+  ++ Q FS 
Sbjct: 60  RSALELVFTQLHAGGKFDSDSYKISGGLHGVGASVVNALSEYVDVLVKREGKVYHQVFSH 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G       +     N+ GT + F+PDP IF +   FD   +    +  AYL+  ++    
Sbjct: 120 GGTKQSALEVIDTTNETGTVVRFKPDPTIFQETVIFDYITIKNKVKQLAYLNKGIEITLI 179

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +       I +   ++FP G+  Y++ +  N+  I+  IF    +  G     VE A+
Sbjct: 180 DYR-------IDKTITYHFPNGILDYVREENANKQPINPNIFYVDGKYDGV---EVEVAL 229

Query: 307 AWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAEL---TQNKRAISIISDDL 362
            +  +  +   ++ N I T EGGTHE G+R AL R I +YAE       K A     DD+
Sbjct: 230 QYNADYNDNLITFVNNINTHEGGTHEDGIRQALVRTINRYAEKVAKNGAKSAQKFGWDDI 289

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
               +GILS+   +P F GQTKTKL +L+A++ V+N + D F+ +L+++P++A  +L+  
Sbjct: 290 KEGMIGILSIRHSDPSFEGQTKTKLSNLNAKKAVDNVVGDAFEEFLMKSPLDAKAILDKN 349

Query: 423 IERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
               + RL  ++ RE   RK A+    LPGKLADC        EL++VEGDSAGGSAK  
Sbjct: 350 STAQKARLAAQRAREETRRKGALDTFSLPGKLADCETKDPTIAELYLVEGDSAGGSAKTG 409

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541
           RNR  QA+LPLRGK+LNV      +  +N +I  +V A+GC  +       LRY K++IM
Sbjct: 410 RNRFFQAILPLRGKVLNVEKVQEARAFSNNEIKSIVTAVGCGIKEDVNVCKLRYNKIVIM 469

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           TDADVDGAHI +LLLTFFY+ M DL+   H+++  PPL++I  G K  YA+ ++  +   
Sbjct: 470 TDADVDGAHIRTLLLTFFYRYMKDLVRHGHIYIAQPPLYKIEAGKKVAYAYSDQQLEDFK 529

Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
                +   +  I R+KGLGEM   QL ET M+   RT+L+V +           +  + 
Sbjct: 530 N--GDYKNLRYTIQRYKGLGEMDPLQLWETTMNPEFRTMLQVTLED----AAIANEVFSN 583

Query: 662 LMGTKADERFKFIQERASFIDDVG 685
           LMG   + R  FIQE ASF++++ 
Sbjct: 584 LMGEDPELRRDFIQENASFVENID 607


>gi|257067232|ref|YP_003153487.1| DNA gyrase subunit B [Brachybacterium faecium DSM 4810]
 gi|256558050|gb|ACU83897.1| DNA gyrase subunit B [Brachybacterium faecium DSM 4810]
          Length = 711

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 254/718 (35%), Positives = 377/718 (52%), Gaps = 41/718 (5%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSA--SDNYDASSIRILEGLEPV 58
           M+D    +     P+S             P       ++A   ++YDAS I +LEGLE V
Sbjct: 1   MSDSDRPMPDQDVPESTPDPSPGAADAAAPAPLTAGERAAHAPEHYDASDITVLEGLEAV 60

Query: 59  RMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPV 118
           R RPGMYIG T E+ LHH+  EV+DN++DE +AG+ + IEV+L  +G + VVD+ RGIPV
Sbjct: 61  RKRPGMYIGSTGERGLHHMVQEVVDNSVDEAMAGHGDTIEVTLLADGGVRVVDHARGIPV 120

Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178
             HP    K  +E++LT LHAGGKF    Y +SGGLHGVG SVVNALS  + V + R   
Sbjct: 121 AMHP-TEGKPAVELVLTVLHAGGKFGGGGYAVSGGLHGVGSSVVNALSIRMEVEIRRDGH 179

Query: 179 IFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLS 238
           ++ Q +SRG+PL+PL+K E+      T ITF  D +IF +   +D   L K  Q  A+L+
Sbjct: 180 VWRQAYSRGVPLAPLDKGEETEETG-TTITFWADDEIFDETV-YDFETLRKRFQQMAFLN 237

Query: 239 GRVKTCWSCDKEIAE---------------------KYGIPEKEEFYFPGGLKTYLQTKL 277
             ++   + ++                         K   P    + +  GL+ +++   
Sbjct: 238 KGLRITLTDERAPEVEETEDDHLVDVELEAEGAETGKDAGPRTVSYLYERGLQDFVEFIN 297

Query: 278 ENR--SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             +   +I  EI + ++E     + +VE A+ W       + +Y NTI T EGGTHE G 
Sbjct: 298 TAKRAEVIHPEIISFESE-DTDAKISVEVAMQWTGAYSESVHTYANTINTHEGGTHEEGF 356

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R +LT  + +Y        ++  ++  +D+      ++SV + EP+F GQTKTKL +  A
Sbjct: 357 RSSLTSIVNRYGRAQGLLKEKDANLTGEDIREGLTAVVSVKLGEPQFEGQTKTKLGNTIA 416

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
           +  +   + D    +   +P EA  ++      +  R   RK R+  R+ + +    +PG
Sbjct: 417 RTFMVKVMTDQLQDWFDSHPAEAKSIVMKGQAAAAAREAARKARDATRRKSPLETGGMPG 476

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL DCS       E+FIVEGDSAGGSA   R+   QA+LP+RGKILNV  A  ++  +NQ
Sbjct: 477 KLRDCSSRNPAECEIFIVEGDSAGGSAVSGRDPRTQAILPIRGKILNVEKARLDRALDNQ 536

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++  L+ A G      +    LRY K+++M DADVDG HI +LLLT  ++ M  LIE  H
Sbjct: 537 EVRSLITAFGTGIGEDFDATKLRYHKIVLMADADVDGQHIVTLLLTLLFRYMRPLIELGH 596

Query: 572 LFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQ 627
           +F+  PPLFR+        Y   +E + + LE  +  G+       I R+KGLGEM   +
Sbjct: 597 VFIAMPPLFRLKWSNAPHEYVFSDEERDERLEAGRAAGRRIPRDNGIQRYKGLGEMDWKE 656

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           L+ T MD N RTL +V +++      D     + LMG   + R +FIQE A  +  + 
Sbjct: 657 LQSTTMDTNTRTLKQVTVDE----AADADTIFSVLMGDDVESRRRFIQENAKDVRFLD 710


>gi|152963978|ref|YP_001359762.1| DNA gyrase, B subunit [Kineococcus radiotolerans SRS30216]
 gi|151358495|gb|ABS01498.1| DNA gyrase, B subunit [Kineococcus radiotolerans SRS30216]
          Length = 686

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 261/702 (37%), Positives = 364/702 (51%), Gaps = 34/702 (4%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           M D          P+   S          P             Y A +I +LEGLE VR 
Sbjct: 1   MPDQETPGPEDTSPEDAPSLADAVAPDGTPRP----------EYGADAITVLEGLEAVRK 50

Query: 61  RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           RPGMYIG T E+ LHHL  EV+DN++DE +AGY + I V++  +G L  VDNGRGIPV+ 
Sbjct: 51  RPGMYIGSTGERGLHHLVYEVVDNSVDEALAGYCDTIAVTMLADGGLRCVDNGRGIPVDI 110

Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
            P    +S LE++LT LHAGGKF    Y +SGGLHGVGISVVNALS  + V V RQ  ++
Sbjct: 111 MP-GEGRSALEVVLTVLHAGGKFGGGGYSVSGGLHGVGISVVNALSRRVDVEVRRQGHVW 169

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
            Q F  G+P++PLEK E+     GT ITF P P+ F     FD   L    Q   +L+  
Sbjct: 170 RQSFEGGVPVAPLEKGEETGE-TGTSITFWPSPETFETTV-FDFETLRTRFQQTCFLNKG 227

Query: 241 VKTCWSCDKEIAEKYGIP-------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
           +    S ++ + ++               + + GGL  Y++     +            E
Sbjct: 228 LTISLSDERVVEDEVEDESTDAKPLRDVTYRYDGGLVDYVKHVNSLKKNEPLHDSIISLE 287

Query: 294 -KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ- 350
            +      ++E A+ W       + ++ N I T EGGTHE+G R ALT  +++YA   + 
Sbjct: 288 AEDTEQGISLEVAMQWTTAYSETVFTFANAINTTEGGTHETGFRTALTSLVQEYARAAKP 347

Query: 351 --NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
              K   ++   D+      I+SV + EP+F GQTKTKL +  A+  V   +R+   H+ 
Sbjct: 348 ALLKENDTLEGSDIREGLTAIISVKLSEPQFEGQTKTKLGNTSARTYVNAQVREHLGHWF 407

Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFI 468
             NP EA ++ +     S  R   RK RE +RK+ + +  LPGKL DC  N     E+FI
Sbjct: 408 ASNPKEAYQIAKKAHSASVARQAARKAREASRKSLLERNSLPGKLKDCQSNNPAECEVFI 467

Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528
           VEGDSAGGSA + R+   QA+LP+RGKILNV  A  ++   NQ++  L+ A G     ++
Sbjct: 468 VEGDSAGGSATRGRDPRTQAILPIRGKILNVEKARLDRALGNQEVQALITAFGTGIGEEF 527

Query: 529 REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ--GT 586
             E LRY K+IIM DADVDG HI +LLLT  ++ M  L+E  H++L  PPL+RI    G 
Sbjct: 528 NLEKLRYHKIIIMADADVDGQHIRTLLLTLLFRYMSPLVENGHVYLAQPPLYRIKWMGGA 587

Query: 587 KSVYAHDEEHKQKILEEFKKHGKGKI---EISRFKGLGEMLASQLKETAMDANKRTLLRV 643
              +A+ +  +  ++E     GK      +  R+KGLGEM   +L ET MD   RTLL+V
Sbjct: 588 AHEFAYSDRERDALMEAGLAAGKKLPKEGKTQRYKGLGEMNWDELSETTMDRAHRTLLQV 647

Query: 644 EINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +              + LMG   + R  FIQ  A  +  + 
Sbjct: 648 TLED----AAAADAVFSVLMGEDVESRRSFIQRNARDVRFLD 685


>gi|283768327|ref|ZP_06341239.1| DNA topoisomerase IV, B subunit [Bulleidia extructa W1219]
 gi|283104719|gb|EFC06091.1| DNA topoisomerase IV, B subunit [Bulleidia extructa W1219]
          Length = 640

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 233/649 (35%), Positives = 349/649 (53%), Gaps = 30/649 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y+  SI+ILEGLE VR RPGMYIG  D   LHHL  E++DNA+DE + G+   I+++
Sbjct: 2   ANKYNDDSIQILEGLEAVRKRPGMYIGAADSHGLHHLIWEIVDNAIDEALNGFGKEIKIT 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN-STYEISGGLHGVGI 159
           L+ +G LTV D+GRGIP   H       T+++I T LHAGGKF +   Y+ +GGLHGVG 
Sbjct: 62  LEKDGSLTVEDHGRGIPTGRH--VSGMPTIQVIFTILHAGGKFTSQGGYKTAGGLHGVGA 119

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL-EKKEKVRNKRGTRITFRPDPKIFGD 218
           SVVNALS+ L V            F  G   +   EK  K     GT + F+PDP IF  
Sbjct: 120 SVVNALSEWLVVESFHDGEHVRMSFKNGGKEASKLEKLGKTTK-TGTIVRFKPDPAIFHV 178

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F   ++ +  + +A+L   +       +E  E       E F++  GL  +L+   E
Sbjct: 179 TH-FHFEQVAERAREEAFLLSGISMVVEDKREGKEAK-----EVFHYENGLVAFLEYLHE 232

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
           +R +I   +      +        ++     +      SY N + T +GG+HE G + A 
Sbjct: 233 DRHVIMEPVKFEGEYQGVEVACIFQYTD---DYQENTYSYANLVHTGDGGSHEVGFKGAF 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394
           T+ + +YA        +  ++   D+      I+SV + E   EF  Q K+KL +  A+ 
Sbjct: 290 TKAMNEYARKYGLLKAKDKNLDGLDVREGLTTIISVRVPEDYLEFQAQVKSKLTTPLAKT 349

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPG 451
            VEN + +    +L ++  EA  L++ +    + R   RK +E  RK          L G
Sbjct: 350 AVENVVLEKLSFWLEEHRNEADDLIKKMQRAQQAREAARKAKENVRKGKNLGKGEKVLSG 409

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLA      +   ELF+VEGDSAGGSAKQ R+   QA+LPLRGK+LN       +I  N+
Sbjct: 410 KLAPAQTKNSKIKELFLVEGDSAGGSAKQGRDSHYQAILPLRGKVLNTEHVSMTEIEKNE 469

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++  L+  LG     ++  +D+ Y KVIIMTDAD DG+HI  LLLTFF++ M  L+EQ  
Sbjct: 470 ELNTLIYTLGAGVGKEFIIDDVNYGKVIIMTDADDDGSHIQILLLTFFFRYMRPLVEQGM 529

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPL+++++G +  Y + +E  +++  +      GK+EI R+KGLGEM A+QL ET
Sbjct: 530 VYIALPPLYKVSKGKEVQYCYSDEELEELKAKL-----GKVEIQRYKGLGEMNATQLWET 584

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            MD + RTL++V I+     L   +  ++ LMG K + R  +I+E   F
Sbjct: 585 TMDPDHRTLIQVNIDD----LLIAEKRVSMLMGNKPESRRHWIEENIQF 629


>gi|257051019|sp|Q9SS38|GYRBP_ARATH RecName: Full=DNA gyrase subunit B, chloroplastic; Flags: Precursor
          Length = 661

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 239/671 (35%), Positives = 374/671 (55%), Gaps = 26/671 (3%)

Query: 29  IPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDE 88
                +    S S +Y +  I++LEGL+PVR RPGMYIG T  + LHHL  E++DNA+DE
Sbjct: 2   SSTMESLQESSTSKDYSSEHIQVLEGLDPVRKRPGMYIGSTGSRGLHHLVYEILDNAIDE 61

Query: 89  VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA--GGKFDNS 146
             AG+A+ I+V L  +  +++ DNGRGIP + HP    KS+LE +LT LHA       +S
Sbjct: 62  AQAGFASKIDVVLHSDDSVSISDNGRGIPTDLHP-ATGKSSLETVLTVLHAGGKFGGKSS 120

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK---EKVRNKR 203
            Y +SGGLHGVG+SVVNALS+ L V V R    F QK+SRG P++ L       + R  +
Sbjct: 121 GYSVSGGLHGVGLSVVNALSEALEVIVRRDGMEFQQKYSRGKPVTTLTCHVLPPESRGTQ 180

Query: 204 GTRITFRPDPK---IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
           GT I F PD +   +F     FD   +    +  A+L+ +V      + +  E+      
Sbjct: 181 GTCIRFWPDKEGFALFTTAIQFDHNTIAGRIRELAFLNPKVTISLKKEDDDPERDV---Y 237

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCN 320
            E+++ GGL  Y+     ++  +   +   K     T   +++W       +  +  Y N
Sbjct: 238 SEYFYAGGLTEYVSWLNTDKKPLHDVLGFRKEINGSTVDVSLQWCS--DAYSDTMLGYAN 295

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
           +I T +GGTH  G++ +LTR +   A+  +   ++ IS+  + +      I+SV +  PE
Sbjct: 296 SIRTIDGGTHIEGVKASLTRTLNSLAKKLKVIKEKDISLSGEHVREGLTCIVSVKVPNPE 355

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQRE 437
           F GQTKT+L + + ++ V+ ++++    YL  +P     ++   +         +R +  
Sbjct: 356 FEGQTKTRLGNPEVRKIVDQSVQEYLTEYLELHPDVLESIISKSLNAYKAALAAKRAREL 415

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
           V  K+ ++   LPGKLADCS      +E+FIVEGDSAGGSAKQ R+R  QA+LPLRGKIL
Sbjct: 416 VRSKSVLKSSSLPGKLADCSSTDPAESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKIL 475

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTR-SQYREEDLRYEKVIIMTDADVDGAHIASLLL 556
           N+       +  N++I +L+  LG   +   + +E+LRY K+II+TDADVDGAHI +LLL
Sbjct: 476 NIERKDEAAMYKNEEIQNLILGLGLGVKGEDFNKENLRYHKIIILTDADVDGAHIRTLLL 535

Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616
           TFF++    L +   +++  PPLF++ +G ++ Y +D+   +KI   F   G     I R
Sbjct: 536 TFFFRYQRALFDAGCIYVGVPPLFKVERGKQAHYCYDDAALKKITASFP--GNASYNIQR 593

Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           FKGLGEM+ +QL ET M+ + R L ++ ++       +T    + LMG + D R + I+ 
Sbjct: 594 FKGLGEMMPAQLWETTMNPDTRILKQLVVDD----AAETNMVFSSLMGARVDVRKELIKS 649

Query: 677 RAS--FIDDVG 685
            A+   ++++ 
Sbjct: 650 AATRMNLENLD 660


>gi|6056198|gb|AAF02815.1|AC009400_11 putative DNA gyrase subunit B [Arabidopsis thaliana]
          Length = 657

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 239/667 (35%), Positives = 374/667 (56%), Gaps = 26/667 (3%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
            +    S S +Y +  I++LEGL+PVR RPGMYIG T  + LHHL  E++DNA+DE  AG
Sbjct: 2   ESLQESSTSKDYSSEHIQVLEGLDPVRKRPGMYIGSTGSRGLHHLVYEILDNAIDEAQAG 61

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA--GGKFDNSTYEI 150
           +A+ I+V L  +  +++ DNGRGIP + HP    KS+LE +LT LHA       +S Y +
Sbjct: 62  FASKIDVVLHSDDSVSISDNGRGIPTDLHP-ATGKSSLETVLTVLHAGGKFGGKSSGYSV 120

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK---EKVRNKRGTRI 207
           SGGLHGVG+SVVNALS+ L V V R    F QK+SRG P++ L       + R  +GT I
Sbjct: 121 SGGLHGVGLSVVNALSEALEVIVRRDGMEFQQKYSRGKPVTTLTCHVLPPESRGTQGTCI 180

Query: 208 TFRPDPK---IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
            F PD +   +F     FD   +    +  A+L+ +V      + +  E+       E++
Sbjct: 181 RFWPDKEGFALFTTAIQFDHNTIAGRIRELAFLNPKVTISLKKEDDDPERDV---YSEYF 237

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILT 324
           + GGL  Y+     ++  +   +   K     T   +++W       +  +  Y N+I T
Sbjct: 238 YAGGLTEYVSWLNTDKKPLHDVLGFRKEINGSTVDVSLQWCS--DAYSDTMLGYANSIRT 295

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH  G++ +LTR +   A+  +   ++ IS+  + +      I+SV +  PEF GQ
Sbjct: 296 IDGGTHIEGVKASLTRTLNSLAKKLKVIKEKDISLSGEHVREGLTCIVSVKVPNPEFEGQ 355

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRK 441
           TKT+L + + ++ V+ ++++    YL  +P     ++   +         +R +  V  K
Sbjct: 356 TKTRLGNPEVRKIVDQSVQEYLTEYLELHPDVLESIISKSLNAYKAALAAKRARELVRSK 415

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + ++   LPGKLADCS      +E+FIVEGDSAGGSAKQ R+R  QA+LPLRGKILN+  
Sbjct: 416 SVLKSSSLPGKLADCSSTDPAESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIER 475

Query: 502 AGSEKIRNNQQIMDLVQALGCRTR-SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
                +  N++I +L+  LG   +   + +E+LRY K+II+TDADVDGAHI +LLLTFF+
Sbjct: 476 KDEAAMYKNEEIQNLILGLGLGVKGEDFNKENLRYHKIIILTDADVDGAHIRTLLLTFFF 535

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           +    L +   +++  PPLF++ +G ++ Y +D+   +KI   F   G     I RFKGL
Sbjct: 536 RYQRALFDAGCIYVGVPPLFKVERGKQAHYCYDDAALKKITASFP--GNASYNIQRFKGL 593

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS- 679
           GEM+ +QL ET M+ + R L ++ ++       +T    + LMG + D R + I+  A+ 
Sbjct: 594 GEMMPAQLWETTMNPDTRILKQLVVDD----AAETNMVFSSLMGARVDVRKELIKSAATR 649

Query: 680 -FIDDVG 685
             ++++ 
Sbjct: 650 MNLENLD 656


>gi|313904177|ref|ZP_07837556.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium cellulosolvens 6]
 gi|313470979|gb|EFR66302.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium cellulosolvens 6]
          Length = 646

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 244/662 (36%), Positives = 337/662 (50%), Gaps = 33/662 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  D+YDASSI++LEGLE VRMRPGMYIG T  K L+HL  E++DN++DE +AGY   I 
Sbjct: 2   AKKDSYDASSIQVLEGLEAVRMRPGMYIGSTGRKGLNHLIYEIVDNSVDEHLAGYCTKIR 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V L+ +G  TV D+GRGIPV  H K        ++LTTLHAGGKFDN  Y+ SGGLHGVG
Sbjct: 62  VVLEADGSCTVTDDGRGIPVNMHEK--GMPAERVVLTTLHAGGKFDNDAYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE-----KVRNKRGTRITFRPDP 213
            SVVNALS  + V ++R   I   +F +G+P+  L +             GT+I F PD 
Sbjct: 120 SSVVNALSVFMDVQISRDGYIHHDRFEKGVPVMELAEDGLLPKIGKTKNTGTKINFMPDG 179

Query: 214 KIFGDKAG--FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           +IF       F A  L        YL+  +   +   +       +   E     G +K 
Sbjct: 180 EIFETYEKSGFSADDLKSRLHETCYLNPNLVIEFVDLRPGKNNEEVTYSEPEGIIGFVKE 239

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTH 330
                   +     +    K E  G     VE A  +  +    +  +CN I   EGGTH
Sbjct: 240 INA-----KEEKLHDPVFFKGEADGIM---VEVAFQYVKDFQENVLGFCNNIYNSEGGTH 291

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G + A T  +  YA        +  +    D+      I+S+   +P F GQTKTKL 
Sbjct: 292 ITGFKQAFTTIMNNYAREIGVLKDKDANFTGADIRNGMTAIISIKHPDPRFEGQTKTKLD 351

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR 448
           + DA +       D    Y  +N      +LE     ++ R    K +            
Sbjct: 352 NPDAAKAAGKVTGDEVVRYFDRNLPVLKTVLECAERSAKIRKTEEKAKTNMLTKQKYSFD 411

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
             GKLA+C    A   E+FIVEGDSAGGSAK ARNR  QA+ P+RGKILNV  A  +K+ 
Sbjct: 412 ANGKLANCESRDASKCEIFIVEGDSAGGSAKMARNRMYQAIFPIRGKILNVEKATIDKVL 471

Query: 509 NNQQIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
            N +I  ++ A GC       + +    LRY+K+IIM DADVDGAHIA+LLLT FY+ M 
Sbjct: 472 ANAEIKSMINAFGCGFSEGYGNDFDISKLRYDKIIIMADADVDGAHIATLLLTLFYRFMP 531

Query: 565 DLIEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
           +LI Q H+++  PPL++      +  Y +D++  ++     KKH   K  + R+KGLGEM
Sbjct: 532 ELIFQGHVYIAMPPLYKTQPSKGEGEYLYDDKALERYR---KKHAGEKFVLQRYKGLGEM 588

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
              QL +T +D +KR + RVEI     + + T+     LMG     R  FI   A+  + 
Sbjct: 589 DPQQLWDTTLDPDKRKMRRVEIEDARMASEMTE----ILMGNDVPPRKAFIYNHAADAE- 643

Query: 684 VG 685
           + 
Sbjct: 644 LD 645


>gi|297833810|ref|XP_002884787.1| hypothetical protein ARALYDRAFT_478355 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330627|gb|EFH61046.1| hypothetical protein ARALYDRAFT_478355 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 238/667 (35%), Positives = 372/667 (55%), Gaps = 26/667 (3%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
            +    S S +Y +  I++LEGL+PVR RPGMYIG T  + LHHL  E++DNA+DE  AG
Sbjct: 2   ESLQESSTSKDYSSEHIQVLEGLDPVRKRPGMYIGSTGSRGLHHLVYEILDNAIDEAQAG 61

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA--GGKFDNSTYEI 150
           +A+ I+V L  +  +++ DNGRGIP + HP    KS LE +LT LHA       +S Y +
Sbjct: 62  FASKIDVVLHSDDSVSISDNGRGIPTDLHP-ATGKSALETVLTVLHAGGKFGGKSSGYSV 120

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK---EKVRNKRGTRI 207
           SGGLHGVG+SVVNALS+ L V V R    F QK+SRG P++ L       + R  +GT I
Sbjct: 121 SGGLHGVGLSVVNALSEALEVIVRRDGMEFQQKYSRGKPVTTLTCHVLPPESRGTQGTCI 180

Query: 208 TFRPDPK---IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
            F PD +   +F     FD   +    +  A+L+ +V      + +  E+       E++
Sbjct: 181 RFWPDKEGFALFTTAIQFDHNTIAGRIRELAFLNPKVTISLKKEDDDPERDL---YSEYF 237

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILT 324
           + GGL  Y+     ++  +   +   K     T   +++W       +  +  Y N+I T
Sbjct: 238 YAGGLTEYVSWLNTDKKPLHDVLGFRKEINGSTVDVSLQWCS--DAYSDTMLGYANSIRT 295

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH  G++ +LTR +   A+  +   ++ IS+  + +      I+SV +  PEF GQ
Sbjct: 296 IDGGTHIEGVKASLTRTLNSLAKKLKVIKEKDISLSGEHVREGLTCIVSVKVPNPEFEGQ 355

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRK 441
           TKT+L + + ++ V+ ++++    YL  +P     ++   +         +R +  V  K
Sbjct: 356 TKTRLGNPEVRKIVDQSVQEYLTEYLELHPDVLESIISKSLNAYKAALAAKRARELVRSK 415

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + ++   LPGKLADCS      +E+FIVEGDSAGGSAKQ R+R  QA+LPLRGKILN+  
Sbjct: 416 SVLKSSSLPGKLADCSSTDPAESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIER 475

Query: 502 AGSEKIRNNQQIMDLVQALGCRTR-SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
                +  N++I +L+  LG   +   + +E+LRY K+II+TDADVDGAHI +LLLTFF+
Sbjct: 476 KDEAAMYKNEEIQNLILGLGLGVKGEDFNKENLRYHKIIILTDADVDGAHIRTLLLTFFF 535

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           +    L +   +++  PPLF++ +G ++ Y +D+   +KI   F  +      I RFKGL
Sbjct: 536 RYQRALFDAGCIYVGVPPLFKVERGKQAHYCYDDAALKKITASFPAN--ASYNIQRFKGL 593

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS- 679
           GEM+ +QL ET M+ + R L ++ +        +T    + LMG + D R + I+  A+ 
Sbjct: 594 GEMMPAQLWETTMNPDTRILKQLVVED----AAETNMVFSSLMGARVDVRKELIKSAATR 649

Query: 680 -FIDDVG 685
             ++++ 
Sbjct: 650 MNLENLD 656


>gi|240146989|ref|ZP_04745590.1| DNA gyrase, B subunit [Roseburia intestinalis L1-82]
 gi|257200860|gb|EEU99144.1| DNA gyrase, B subunit [Roseburia intestinalis L1-82]
          Length = 640

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 242/656 (36%), Positives = 342/656 (52%), Gaps = 34/656 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + +  YD SSI +LEGLE VR RPGMYIG    K L+HL  E++DNA+DE +AG  + I 
Sbjct: 2   AKTGGYDESSISVLEGLEAVRKRPGMYIGSVSRKGLNHLIYEIVDNAVDEHLAGACDTIC 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+L+ +G  TV DNGRG+PV  H K    S   I+ TTLHAGGKFD+S Y+ SGGLHGVG
Sbjct: 62  VTLEADGSCTVEDNGRGVPVGMHAK--GVSAARIVYTTLHAGGKFDDSAYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGTRITFRPDP 213
            SVVNALS  + V ++R   I    + RGIP+  LE        K +   GT++ F PDP
Sbjct: 120 SSVVNALSTHMDVWISRDGYIHHDGYERGIPVVELENGLLPTIGKTKK-TGTKVNFLPDP 178

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IF     F    +       AYL+  +   +   +         E   ++   G+  ++
Sbjct: 179 EIFEK-TRFKEDEVKSRMHETAYLNPALTIIYEDKR-----GPEVEHIVYHEEEGIIGFV 232

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   +   ++  ++   K E+ G    TVE A  +  E    I  +CN I   EGGTH +
Sbjct: 233 KDLNKKNEVLH-DVVYFKGEQDGI---TVEAAFQYTNEFHENILGFCNNIFNAEGGTHIT 288

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G +   T  I  YA       ++  +    D+      I+S+   +P F GQTKTKL + 
Sbjct: 289 GFKTVFTTVINSYARELGILKEKDSNFTGADVRNGMTAIVSIKHPDPRFEGQTKTKLDNQ 348

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
           DA R       D    Y  +N      ++    + ++ R    + +              
Sbjct: 349 DAARVTAKVTGDEIQLYFDKNLEVLKTVISCAEKAAKIRKTEERAKTNLLTKQKFSFDSN 408

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLA+C    A   E+FIVEGDSAGGSAK AR+R+ QA+LP+RGKILNV  A  +K+  N
Sbjct: 409 GKLANCESRDASICEIFIVEGDSAGGSAKTARDRNFQAILPIRGKILNVEKASIDKVLAN 468

Query: 511 QQIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
            +I  ++ A GC       + +    LRY+K+IIM DADVDGAHI++LLLT FY+ M +L
Sbjct: 469 AEIKTMINAFGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPEL 528

Query: 567 IEQKHLFLISPPLFR-ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           I + H+++  PPL++ I    +  Y +D+      LE ++++ K    + R+KGLGEM A
Sbjct: 529 IYEGHVYVAMPPLYKAIPSKGEEEYLYDDA----ALERYRRNHKSNFTLQRYKGLGEMDA 584

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
            QL ET ++   R L R+EI       +   D    LMG     R  FI E A   
Sbjct: 585 EQLWETTLNPETRILKRIEIEDG----RMASDITELLMGNDVPPRKMFIYEHAKDA 636


>gi|9955568|emb|CAC05495.1| DNA gyrase subunit B-like protein [Arabidopsis thaliana]
          Length = 760

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 248/720 (34%), Positives = 389/720 (54%), Gaps = 57/720 (7%)

Query: 9   FSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGG 68
           F      SQ   ++   S     + A    + S  Y +  I++LEGL+PVR RPGMYIG 
Sbjct: 54  FQLTSVLSQRLIQRNAISSRFLSTEASQETTTSKGYSSEQIQVLEGLDPVRKRPGMYIGS 113

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T  + LHHL  E++DNA+DE  AGYA+ ++V L  +G ++VVDNGRGIP + HP    KS
Sbjct: 114 TGSRGLHHLVYEILDNAIDEAQAGYASKVDVVLHADGSVSVVDNGRGIPTDLHP-ATKKS 172

Query: 129 TLEIILTTLHAGGKFDNST--YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           +LE +LT LHAGGKF  ++  Y +SGGLHGVG+SVVNALS+ L V+V R      Q +SR
Sbjct: 173 SLETVLTVLHAGGKFGGTSSGYSVSGGLHGVGLSVVNALSEALEVSVWRDGMEHKQNYSR 232

Query: 187 GIPLSPLEKKE---KVRNKRGTRITFRPDPK----------------------------- 214
           G P++ L  +    + +  +GT I F PD +                             
Sbjct: 233 GKPITTLTCRVLPLESKGTKGTSIRFWPDKEGFACFPLLTTLPKPKLDLMINFPLWNELF 292

Query: 215 -IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            +F     FD   +    +  A+L+ +V      + +  EK    +  E+ F GGL  Y+
Sbjct: 293 SVFTTAIEFDHNTIAGRIRELAFLNPKVTISLKKEDDDPEKT---QYSEYSFAGGLTEYV 349

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE--ENPEITSYCNTILTDEGGTHE 331
                +++ I   +      ++  +  TV+ A+ WC    +  +  Y N+I T +GGTH 
Sbjct: 350 SWLNTDKNPIHDVLGF----RREINGATVDVALQWCSDAYSDTMLGYANSIRTIDGGTHI 405

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G++ +LTR +   A+ ++   ++ IS+  + +      I+SV +  PEF GQTKT+L +
Sbjct: 406 EGVKASLTRTLNTLAKKSKTVKEKDISLSGEHVREGLTCIVSVKVPNPEFEGQTKTRLGN 465

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLR 448
            + ++ V+ ++++    +L  +P     ++   +         +R +  V  K+ ++   
Sbjct: 466 PEVRKIVDQSVQEYLTEFLELHPDILESIISKSLNAYKAALAAKRARELVRSKSVLKSSS 525

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS      +E+FIVEGDSAGGSAKQ R+R  QA+LPLRGKILN+       + 
Sbjct: 526 LPGKLADCSSTDPEVSEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMY 585

Query: 509 NNQQIMDLVQALGCRTR-SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
            N++I +L+  LG   +   +++E+LRY K+II+TDADVDGAHI +LLLTFF++    L 
Sbjct: 586 KNEEIQNLILGLGLGVKGEDFKKENLRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALF 645

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +   +++  PPLF++ +G  + Y +D+   +KI   F  +      I RFKGLGEM+  Q
Sbjct: 646 DAGCIYVGVPPLFKVERGKNAQYCYDDADLKKITSNFPAN--ASYNIQRFKGLGEMMPEQ 703

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS--FIDDVG 685
           L ET M+   R L ++ ++     + +   + + LMG + D R + I+  A+   +  + 
Sbjct: 704 LWETTMNPETRILKQLVVDD----IAEANMTFSSLMGARVDVRKELIKNAATRINLQRLD 759


>gi|227431865|ref|ZP_03913889.1| DNA topoisomerase IV subunit B [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352407|gb|EEJ42609.1| DNA topoisomerase IV subunit B [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 687

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 242/658 (36%), Positives = 361/658 (54%), Gaps = 33/658 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           ++YD+ SI+ILEGLE VR RPGMYIG TD + LHHL  E++DNA+DE + GY N I V++
Sbjct: 5   NHYDSDSIKILEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALGGYGNEIRVTI 64

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             N  +TV D GRG+P+  H     K T E+ILT LHAGGKF    Y  SGGLHGVG SV
Sbjct: 65  HDNNAITVQDFGRGMPIGMHE--SGKPTPEVILTVLHAGGKFGQGGYATSGGLHGVGSSV 122

Query: 162 VNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VNALS+ L VT+ R+   + ++F + G P+  L    K +   GT +TF+PD  IF    
Sbjct: 123 VNALSESLTVTIVREGHKWQEEFVNGGNPVGTLRDLGKTKEPTGTTVTFKPDATIFSATV 182

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +    L +  +  ++L   VK   + ++           EE+++  GL+ ++    E++
Sbjct: 183 -YKFDILAERLRESSFLMSGVKFTLTDER-----VDPVRVEEYHYEKGLEAFVGFLNEDK 236

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I     T + E++      V+ A  + +   E   S+ N + T +GGTHE G R A T
Sbjct: 237 ETIGPV-MTFEGEQESI---VVDVAAQYNDGYSETLLSFVNNVRTQDGGTHEVGFRTAWT 292

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395
           +   +YA        +  ++   D+      ++S+ + E   +F GQTK KL + +A+  
Sbjct: 293 KAFNEYARKVNLLKDKDKNLEGTDVREGLSAVISLRVPEQFLQFEGQTKDKLGTPEARGI 352

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGK 452
           V++ + +    +L++N      L+   +   E R   R+ R+ +R    +  +     GK
Sbjct: 353 VDSVVNETLGRFLMENGDFGQNLIRKALRAREAREAARRARDESRTGKTKGAKDRLLSGK 412

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LA      A   ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N++
Sbjct: 413 LAPAQSKNADKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLADILKNEE 472

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  L+ A+G    + ++ ED  + K+IIMTDAD DGAHI +LLLTFFY+ M  LIE   +
Sbjct: 473 ISTLIYAIGGGVGTDFKVEDASFNKIIIMTDADDDGAHIQTLLLTFFYKYMRPLIEAGRV 532

Query: 573 FLISPPLFRIT---QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           ++  PPL+R+    +  +  +A   +     LE        + E++RFKGLGEM A  L 
Sbjct: 533 YIALPPLYRVKYSSKKIEDQFAWTNDE----LESITSQSDARYELTRFKGLGEMNAPLLW 588

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF-IDDVGT 686
           ET MD   RTL+R++I+  +      +  +  LMG K D R ++I+    F +D+ G+
Sbjct: 589 ETTMDPESRTLIRIKIDDAV----LAEKRVTTLMGDKVDPRREWIEANVHFTLDEAGS 642


>gi|326486754|gb|ADZ76420.1| DNA gyrase subunit B [Bacillus amyloliquefaciens]
          Length = 588

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 245/604 (40%), Positives = 355/604 (58%), Gaps = 20/604 (3%)

Query: 67  GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           G T  K LHHL  E++DN++DE +AGY   I + ++ +  +TV DNGRGIPV    K   
Sbjct: 1   GSTSSKGLHHLVWEIVDNSIDEALAGYCTDINIEIEKDNSITVKDNGRGIPVGIQEKM-G 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           +  +E+I+T LHAGGKFD S Y++SGGLHGVG SVVNALS  L VTV R   I  Q + R
Sbjct: 60  RPAVEVIMTVLHAGGKFDGSGYKVSGGLHGVGASVVNALSTTLDVTVHRDGKIHYQAYER 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G+P++ LE      +K GT   F PDP+IF +   +D   L    +  A+L+  V     
Sbjct: 120 GVPVADLEVIGDT-DKTGTITHFVPDPEIFKETTVYDYDLLSNRVRELAFLTKGVNITIE 178

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +E  E+        +++ GG+K+Y++    ++ +I  E    + EK G    TVE A+
Sbjct: 179 DKREGQERKNE-----YHYEGGIKSYVEYLNRSKEVIHEEPIYIEGEKDGI---TVEVAL 230

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            + +     I S+ N I T EGGTHE+G +  LTR I  YA       +   ++  DD+ 
Sbjct: 231 QYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARRKGIFKENDPNLSGDDVR 290

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                I+S+   +P+F GQTKTKL + +A+   +       + +L++NP  A K++E  +
Sbjct: 291 EGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSSALETFLLENPDSARKIVEKGL 350

Query: 424 ERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
             +  R+  +K      RK+A+    LPGKLADCS      +EL+IVEGDSAGGSAKQ R
Sbjct: 351 MAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGR 410

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           +R  QA+LPLRGKILNV  A  +KI +N ++  ++ ALG      +  E  RY KV+IMT
Sbjct: 411 DRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVVIMT 470

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILE 602
           DADVDGAHI +LLLTFFY+ M ++IE  ++++  PPL+++ QG +  YA++++   ++L+
Sbjct: 471 DADVDGAHIRTLLLTFFYRYMREIIENGYVYIAQPPLYKVQQGKRVEYAYNDKQLDELLK 530

Query: 603 EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKL 662
           E  +  K    + R+KGLGEM A+QL ET MD   RTLL+V +   +    D  ++   L
Sbjct: 531 ELPQSPKPG--LQRYKGLGEMNATQLWETTMDPATRTLLQVNLEDAM----DADETFEML 584

Query: 663 MGTK 666
           MG K
Sbjct: 585 MGDK 588


>gi|311897312|dbj|BAJ29720.1| putative DNA gyrase subunit B [Kitasatospora setae KM-6054]
          Length = 663

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 247/671 (36%), Positives = 371/671 (55%), Gaps = 19/671 (2%)

Query: 24  KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVID 83
             SG    +P  ++Q A   YDAS+I++LEGL+ VR RPGMYIG T E+ LHHL  E++D
Sbjct: 2   ADSGNPSQTPDPSDQKA---YDASAIQVLEGLDAVRKRPGMYIGSTGERGLHHLVYEIVD 58

Query: 84  NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143
           N++DE +AG+A+ I V++  +G + VVDNGRGIPV   P   ++  +E++LT LHAGGKF
Sbjct: 59  NSVDEALAGHADTIGVTILADGGVRVVDNGRGIPVGIMP-GQDRPAVEVVLTVLHAGGKF 117

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
               Y +SGGLHGVGISVVNALS  L V ++     ++Q++  G P +PL + E+     
Sbjct: 118 GGGGYAVSGGLHGVGISVVNALSTRLAVDISTDGARWTQEYKSGAPTAPLARHEETGETG 177

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEE 262
            T +TF  DP IF     +    L +  Q  A+L+  +    + ++ E  +  G P    
Sbjct: 178 -TTVTFWADPDIFETTV-YSFETLSRRFQEMAFLNKGLTIALTDERPEHVDDEGKPLSVT 235

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           + + GG+  ++      +  +          +      + E A+ W       + S+ NT
Sbjct: 236 YRYDGGIADFVAHLNSRKGEVIHPSVIDFEAEDKDKTISAEIAMQWNSSYTEGVYSFANT 295

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEF 379
           I T  GGTHE G R ALT  + +YA   +   ++  ++  +D+      I+SV + EP+F
Sbjct: 296 IHTHGGGTHEEGFRAALTGLMNRYARDKKLLREKDDNLSGEDIREGLTAIISVKLGEPQF 355

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN 439
            GQTK KL + +A+  V+  + +    +L +NP EA  ++   I+ +  R+  RK R++ 
Sbjct: 356 EGQTKDKLGNTEAKTFVQKVVNEHLADWLDRNPAEAADIIRKSIQAASARVAARKARDLT 415

Query: 440 RKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
           R+   +    LPGKL+DC        E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILN
Sbjct: 416 RRKGLLESASLPGKLSDCQSKDPAECEIFIVEGDSAGGSAKQGRDPRTQAILPIRGKILN 475

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  +K+  N ++  L+ A GC  +  Y    LRY K+++M DADVDG HI +LLLT 
Sbjct: 476 VEKARIDKVLQNTEVQALISAFGCGIQEDYDAAKLRYHKIVLMADADVDGQHIRTLLLTL 535

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE---I 614
            ++ M  L+E  +++L  PPL++I  G     YA+ +  +  ++    + G+   +   I
Sbjct: 536 LFRFMRPLVEAGYVYLAMPPLYKIKWGRDEFEYAYSDRERDALIAAGVEAGRRLPKDDAI 595

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
            RFKGLGEM A +L+ T MDA  R LL+V +           D  + LMG   + R  FI
Sbjct: 596 QRFKGLGEMNAEELRVTTMDAAHRLLLQVTLED----AARADDLFSVLMGEDVEARRSFI 651

Query: 675 QERASFIDDVG 685
           Q  A  +  + 
Sbjct: 652 QRNAKDVRFLD 662


>gi|293977916|ref|YP_003543346.1| DNA gyrase subunit B [Candidatus Sulcia muelleri DMIN]
 gi|292667847|gb|ADE35482.1| DNA gyrase subunit B [Candidatus Sulcia muelleri DMIN]
          Length = 667

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 255/658 (38%), Positives = 381/658 (57%), Gaps = 23/658 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           + +++NY + +I+ L+G+E VR+RP MYIG    K LHH+  EVI+N++DE ++G+ + I
Sbjct: 17  KKSNENYTSKNIKFLDGIEHVRLRPSMYIGDIGIKGLHHMVYEVINNSIDESLSGFCDKI 76

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V++  +  +TV+DNGRGIPVE H K    S LE+++T + AGGKFDN++Y+ SGGLHGV
Sbjct: 77  YVTIHKDNSITVLDNGRGIPVELHEK-EGISALELVMTKIGAGGKFDNNSYKFSGGLHGV 135

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           GIS VNALS +L   + R   I+ QK+SRG+P+S LE     +N+RGT+ITF+ D     
Sbjct: 136 GISCVNALSSKLIAKIFRNGKIYVQKYSRGVPISKLEIIGDSKNQRGTQITFKADK-FLF 194

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
            K  ++ + L    +  ++L+  +      +++I+ K G  +K  F+   G+K +L    
Sbjct: 195 KKRSYNYSILKNRLRELSFLNKGLSISLLDERKIS-KTGFFKKNHFFSKKGIKEFLMFIE 253

Query: 278 ENRSLISSEIFTGKTEKKG-------THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            N+  I       K+  K             +E  + +      +I SY N I T EGGT
Sbjct: 254 TNKESIIENYKDKKSRIKDFFYLKKNKKNLNLELVMRYNSSYKEKIFSYVNNINTSEGGT 313

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           H SG + ALT+  KK+    +  + + I     +     IL++ I  P+F GQTK KLV+
Sbjct: 314 HISGFKKALTKTFKKFFSKNRRFKKLKISGGSFIEGLTAILTIKIINPKFEGQTKNKLVN 373

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
            +    VE  ++  F+ +L +NP+   K+L  V   ++ R   ++ RE+ +    +K  L
Sbjct: 374 YEIIGLVEKIVKKKFNSFLEKNPLYLKKILNKVFLSAKARQAYKRVRELIKTKTSKKNNL 433

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           P KLADCS    +  EL++VEGDSAGG+AKQ R R  QAVLPLRGKILNV  +   KI  
Sbjct: 434 PIKLADCSSKNPNLCELYLVEGDSAGGTAKQGRERKFQAVLPLRGKILNVEKSIKNKIFE 493

Query: 510 NQQIMDLVQALGCRTRSQYREEDLR-----YEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           N++I ++  ALG     +     L      Y+K+IIMTDAD+DG+HI++L+LTFF++ M 
Sbjct: 494 NEEIKNIFLALGVFFFKKKNIIKLNIKKIRYKKIIIMTDADIDGSHISTLVLTFFFRYMR 553

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
            LIE+ ++++ +PPLF I    K +YA + + ++KIL   KK     I I R+KGLGEM 
Sbjct: 554 ILIEKGYIYIATPPLFLIKNYKKKIYAWNYKEREKIL---KKSLLKGISIQRYKGLGEMN 610

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           A QL ET M+   RTL +V I    ++ K      + LMG     R +FI+  A F  
Sbjct: 611 AEQLWETTMNPINRTLRKVTI----HNRKIANKIFSMLMGENVLPRKQFIETNALFAK 664


>gi|300173091|ref|YP_003772257.1| DNA topoisomerase IV subunit B [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887470|emb|CBL91438.1| DNA topoisomerase IV, B subunit [Leuconostoc gasicomitatum LMG
           18811]
          Length = 690

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 247/658 (37%), Positives = 357/658 (54%), Gaps = 33/658 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           ++YD+ SI+ILEGLE VR RPGMYIG TD + LHHL  E++DNA+DE + GY + I V++
Sbjct: 5   NHYDSDSIKILEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALGGYGHDIRVTI 64

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             N  +TV D GRG+PV  H     K T E+ILT LHAGGKF    Y  SGGLHGVG SV
Sbjct: 65  HENNAITVQDFGRGMPVGMHE--SGKPTPEVILTVLHAGGKFGQGGYATSGGLHGVGSSV 122

Query: 162 VNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VNALS+ L VT+ R    + + F   G P+  L      +   GT++TF+PD  IF    
Sbjct: 123 VNALSESLQVTIVRDGHKWQEDFIKGGQPVGTLRDLGVTKEPSGTKVTFKPDATIFSATV 182

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +    L +  +  A+L   VK   + ++           EE+++  GL+ ++    E +
Sbjct: 183 -YKYDTLSERLRESAFLMSGVKFSLTDER-----VKPKRVEEYHYEKGLEAFVGFLNEEK 236

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
             I S   T + ++ G     VE A  + +   E   S+ N + T +GGTHE G R A T
Sbjct: 237 ETIGSI-MTFEGQQDGI---AVEVAAQYNDGYSETLLSFVNNVRTQDGGTHEVGFRTAWT 292

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395
           +   +YA       ++  ++   D+      ++S+ + E   +F GQTK KL + +A+  
Sbjct: 293 KAFNEYARKVNLLKEKDKNLEGTDVREGLAAVISLRVPEQFLQFEGQTKGKLGTPEARGI 352

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGK 452
           V+  + +    +L++N      L+   I   E R   RK R+ +R    +  +     GK
Sbjct: 353 VDAVVNETLGRFLMENGDFGQNLIRKAIRAREAREAARKARDESRTGKTKGQKDRLLSGK 412

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LA      A   ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N++
Sbjct: 413 LAPAQSKNAEHNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLADILKNEE 472

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  L+ A+G    + ++  D  + KVIIMTDAD DGAHI +LLLTFFY+ M  LIE   +
Sbjct: 473 ISTLIYAIGGGVGTDFKVADTAFSKVIIMTDADDDGAHIQTLLLTFFYKYMKPLIEAGRV 532

Query: 573 FLISPPLFRITQGTKSV---YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           ++  PPL+R+   +K     +A   +     LE        + E++RFKGLGEM A  L 
Sbjct: 533 YIALPPLYRVKYASKKFEDKFAWTNDE----LETITNQNDARYELTRFKGLGEMNAPLLW 588

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF-IDDVGT 686
           ET MD   RTL+RV+I+  +      +  +  LMG K + R ++I+    F +D+ G+
Sbjct: 589 ETTMDPESRTLIRVKIDDAV----LAEKRVTTLMGDKVEPRREWIEANVHFTLDEAGS 642


>gi|323498028|ref|ZP_08103036.1| DNA topoisomerase IV subunit B [Vibrio sinaloensis DSM 21326]
 gi|323316904|gb|EGA69907.1| DNA topoisomerase IV subunit B [Vibrio sinaloensis DSM 21326]
          Length = 626

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 246/645 (38%), Positives = 362/645 (56%), Gaps = 24/645 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y+A  + +LEGL+PVR RPGMY   T+ +  +HL  EVIDN++DE +AG+A  I+V 
Sbjct: 2   AEQYNAKDLSVLEGLDPVRHRPGMY---TETERPNHLAQEVIDNSVDEALAGHAKKIKVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+    S +E+ILT LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-KGISGVELILTKLHAGGKFSNDNYKFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDK 219
           VVNALS  + VTV R+  +    F  G  ++ L       +   GT + F PD K F   
Sbjct: 118 VVNALSKRVEVTVKREGQVHEIAFEHGNAVTELTVTGTCGHRNTGTSVHFWPDAKYFDSY 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F + RL+   ++KA L   ++  +S      E        ++++  GLK YL   ++ 
Sbjct: 178 -KFSSLRLVNNLRAKAVLCPGLEITFSDKVNNEE-------HKWFYEDGLKDYLAEGVKG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
             ++ +E + G+         T               SY N + T +GGTH +GLR  L 
Sbjct: 230 YEVLPAEPYIGEFTADTEM-ATWAVIWQPEGGEMITESYVNLVPTKQGGTHVNGLRQGLL 288

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R + +  DD+      +LSV +++P+FAGQTK +L S      V  
Sbjct: 289 DAMREFCEFRNLLPRGVKLTGDDIFDRCSYVLSVKMQDPQFAGQTKERLSSRQTAAFVSG 348

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L + P  A +L E  I  +  R+R    ++V RK       LPGKL DCS 
Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEVCIANAHRRMR--ASKKVVRKKVASGPALPGKLTDCSV 406

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
              + TE+F VEGDSAGGSAKQAR+R  QAV+PLRGKILN     ++++  +Q++ D+  
Sbjct: 407 QDLNRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG    +    + LRY K+ I+ DAD DG HIA+LL   F +    L+E  H+++  PP
Sbjct: 467 ALGIDPDNDNL-DGLRYGKICILADADSDGLHIATLLCALFTRHFRALVEAGHIYVAMPP 525

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+RI  G +  YA D++ K+ ILE   K  K KI + RFKGLGEM   QL+ET MD N R
Sbjct: 526 LYRIDCGKEVFYALDDDEKEGILERLSKK-KAKINVQRFKGLGEMNPLQLRETTMDPNTR 584

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            L+++ I+ +    + T + ++ L+G K AD+R  ++Q      +
Sbjct: 585 RLVQLTIDDN----ESTMEMMDMLLGKKRADDRRSWLQNNGDMAE 625


>gi|226312850|ref|YP_002772744.1| DNA topoisomerase IV subunit B [Brevibacillus brevis NBRC 100599]
 gi|226095798|dbj|BAH44240.1| DNA topoisomerase IV subunit B [Brevibacillus brevis NBRC 100599]
          Length = 656

 Score =  562 bits (1447), Expect = e-158,   Method: Composition-based stats.
 Identities = 232/670 (34%), Positives = 355/670 (52%), Gaps = 44/670 (6%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
                  +  Y    I++LEGL  VR RPGMYIG T  + LHHL  E++DNA DE +AG 
Sbjct: 2   KETETQQTLTYTEEDIQVLEGLIAVRKRPGMYIGSTGSRGLHHLLWEIVDNAKDEALAGV 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
            + I V+L  +G ++V D+GRGIP   H     +   E+I TTLHAGGKF    Y+ SGG
Sbjct: 62  NDSIIVTLYKDGSVSVEDHGRGIPTGMHK--TGRPVPEVIFTTLHAGGKFGGGGYKKSGG 119

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSR----------GIPLSPLEKKEKVRNKR 203
           LHGVG SVV ALS  L V + R+  I  Q+F            G P++ LE     +   
Sbjct: 120 LHGVGSSVVVALSKWLEVEIHREGKIHKQRFEYVVDANGTEHVGKPVTGLEITGNTKR-T 178

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F PD  +FG+ A FD   +    +  A+L  +++     ++   +K      EEF
Sbjct: 179 GTTVRFLPDDAVFGN-ARFDYETIRDRFRETAFLLKKLRMVLIDERGPEKKR-----EEF 232

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           YF  GLK+Y+    E ++ +       + EK   +   VE A  + +     + SY N+I
Sbjct: 233 YFEDGLKSYVSYLNEGKNSLHPI-VYFEGEKDNIY---VELAFQYNDGYAETLVSYVNSI 288

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
           +T +GGTH +G R   TR   ++A       ++  ++  +DL    +G+LS+ + + +F 
Sbjct: 289 VTTDGGTHVTGFRNGTTRIFNEFARKKGYLKEKDPNLTGNDLREGFLGVLSLQMADVQFE 348

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR---- 436
            QTK KL + +A+  VE  + +    +L +NP     L++  +  +E R   RKQR    
Sbjct: 349 SQTKDKLGNEEARAIVEQIVSEKLGFFLEENPEIGKLLIDKAVRSAEIREELRKQREALR 408

Query: 437 -EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
            +   KTA ++  +  K        +   ELF+VEGDSAGGSAKQARN   QA+  LRGK
Sbjct: 409 GDKKGKTAKKRKSISEKFTPPQYRDSKRNELFLVEGDSAGGSAKQARNSEFQALFSLRGK 468

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLL 555
            LN   A   ++  N++   +++ L      ++  E+  ++KVIIM+DADVDG+HI +LL
Sbjct: 469 PLNTEKAKLSEVLANEEFRTILEVLETDIGEEFSIENCAFDKVIIMSDADVDGSHIQTLL 528

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRIT---QGTKS--VYAHDEEHKQKILEEFKKHGKG 610
           LTFF++ M  +I   HL++  PPL+++    +G ++  +Y   +   ++ L++  +    
Sbjct: 529 LTFFFRYMRPMIAAGHLYIAQPPLYQVKKQSKGKQTEAIYCWSDYELEQALKKVGR---- 584

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADER 670
             E+ R+KGLGEM A QL ET MD   R L++VE+      L   +  +  LMG K   R
Sbjct: 585 GAEVQRYKGLGEMNADQLWETTMDPETRKLIKVELED----LAHCEKLVTVLMGDKVPPR 640

Query: 671 FKFIQERASF 680
            ++I+   +F
Sbjct: 641 REWIENHVTF 650


>gi|94984653|ref|YP_604017.1| DNA topoisomerase (ATP-hydrolyzing) [Deinococcus geothermalis DSM
           11300]
 gi|94554934|gb|ABF44848.1| DNA topoisomerase (ATP-hydrolyzing) [Deinococcus geothermalis DSM
           11300]
          Length = 711

 Score =  562 bits (1447), Expect = e-158,   Method: Composition-based stats.
 Identities = 258/663 (38%), Positives = 357/663 (53%), Gaps = 22/663 (3%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYI-GGTDEKALHHLFSEVIDNAMDEVIAG 92
                   D+Y A SI IL+GLE VR RPGMY+ GGT     H L +E+IDNA+DE +AG
Sbjct: 54  TMTQALPQDHYTADSISILKGLEAVRKRPGMYVQGGTGIDGYHQLLTEIIDNAIDEGLAG 113

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           +A  + V +  +G  TV DNGRGIPV+   K   +  +E+I T LHAGGKF    Y++SG
Sbjct: 114 FATEVHVIMHADGSATVTDNGRGIPVDIM-KSEGRPAIEVIFTELHAGGKFGGGAYKVSG 172

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN--KRGTRITFR 210
           GLHGVG SVVNALS  L VTV +   +   +F RG   +PLE         +  T++TF 
Sbjct: 173 GLHGVGSSVVNALSTYLDVTVNKDGNLHHIRFERGTVTTPLEVLGPTPQDVRWATKVTFH 232

Query: 211 PDPKIFGDKAG-FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           PDP +F +    F+  R+    +  AYL+G  K     ++      G   +E F+  GG+
Sbjct: 233 PDPTVFSEFENLFNYDRIRGRLRELAYLTGL-KIVVRDERVGLH-GGEIREETFHEQGGI 290

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGT 329
             + +  + + S +  +               V +  A    +  I +Y N I T +GGT
Sbjct: 291 ANFARALVTDDSKLLYDQPIVMRGTHSDVEVEVAFIHANTYASDNILTYANMIRTRDGGT 350

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKL 387
             +G + A TR + KYA+     ++ +     DDL+     ++SV + EP+F  Q K KL
Sbjct: 351 PLTGFKTAYTRILNKYAKDKNLIKSGNPVPTGDDLLEGIYCVVSVKLPEPQFESQAKVKL 410

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRK 446
           ++ +AQ  V   + + F  +L +NP     ++E   E +  R   RK    V R   +  
Sbjct: 411 LNSEAQTAVNAIVGEKFTEFLEENPKIGRTIVEKAAEAARAREAARKARDIVRRSNPLEN 470

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC+      +ELFIVEGDSAGGSAK  R R  QA+LPLRGKILNV  +   K
Sbjct: 471 DDLPGKLADCTSQDPAESELFIVEGDSAGGSAKMGRERRYQAILPLRGKILNVEKSDLNK 530

Query: 507 IRNNQQIMDLVQALG-----CRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
           I  N +I  ++ A+G        R  +   +LRY K+IIMTDAD+DG HI +LLLTFFY+
Sbjct: 531 ILKNAEIRAMIGAIGAGVEGTGDRMHFDLSNLRYHKIIIMTDADMDGGHITTLLLTFFYR 590

Query: 562 EMYDLIEQKHLFLISPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
            M  +IE  +L++  PPL+RI  G   K  Y + EE  ++ +    K GK K EI RFKG
Sbjct: 591 YMRPIIEAGYLYIAQPPLYRIMVGREKKGTYLYTEEELKEHVARATKEGK-KYEIQRFKG 649

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679
           LGEM A QL +T M+   R L RV++      L    +    LMG +   R +FIQE A 
Sbjct: 650 LGEMNAEQLWDTTMNPETRALKRVQVED----LIIANEVFEDLMGNEVGPRKRFIQENAR 705

Query: 680 FID 682
           F +
Sbjct: 706 FAE 708


>gi|330813294|ref|YP_004357533.1| DNA gyrase subunit B [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486389|gb|AEA80794.1| DNA gyrase subunit B [Candidatus Pelagibacter sp. IMCC9063]
          Length = 696

 Score =  562 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 257/702 (36%), Positives = 379/702 (53%), Gaps = 64/702 (9%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYA 94
                 ++Y A SIR+L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ 
Sbjct: 6   KKIEKPESYGADSIRVLKGLDAVRKRPGMYIGDTDDGTGLHHMIFEVVDNSIDEALAGHC 65

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I+V ++ +  +TV DNGRGIPV+ H K    S  E+I+T LHAGGKFD++TY++SGGL
Sbjct: 66  SKIDVFINADNTVTVSDNGRGIPVDIH-KSEGISAAEVIMTQLHAGGKFDHNTYKVSGGL 124

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS  L +T++R+   +  +F  G  + PL +      + GT +TF P  +
Sbjct: 125 HGVGVSVVNALSKNLKLTISREKKKYFVEFENGAVVKPLVEIG-SSEETGTTLTFSPSTE 183

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     F  + L K  +  AYL+  ++      ++       P+  +F F GG+K ++ 
Sbjct: 184 IFTS-TKFQISILEKRLKELAYLNKGLEINLIDQRKSK-----PQIFQFKFEGGIKEFVI 237

Query: 275 TKLENRSLI---------SSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTD 325
              +N+  I            I+   T+       ++ W   +   + ++  + N I   
Sbjct: 238 DLNKNKEKIKNDTGKQVLDDPIYFIGTKNNIEVECSLVWNATY---SEQVMCFTNNIPQK 294

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH  G R A+TR I KY        K  ++I  DD+    + +LS  + +P+F+ QT
Sbjct: 295 DGGTHLLGFRNAITRLINKYVTDNGLAKKEKVAISGDDVREGLICVLSAKVPDPKFSSQT 354

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKT 442
           K KLVS + +  VE    +    +  Q+  E   ++  +I+ +  R   RK RE   RK+
Sbjct: 355 KEKLVSSEVRPVVETIASEQLSMWFDQHQKETKIIIGKIIQAAVAREVARKARESVRRKS 414

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA-- 500
           A+    LPGKLADC  N     ELFIVEGDSAGGSAKQARNR  QAVLPLRGKILN    
Sbjct: 415 ALDITSLPGKLADCQTNDKEMAELFIVEGDSAGGSAKQARNREFQAVLPLRGKILNTYVQ 474

Query: 501 --------SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIA 552
                        K+ ++ +I+ L+ ALG      ++ E+LRY K++IMTDADVDG+HI 
Sbjct: 475 QKNDSSEKKKVFAKMLSSNEIITLINALGTG-FDPFQIENLRYGKIVIMTDADVDGSHIR 533

Query: 553 SLLLTFFYQE-MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKI-------LEEF 604
           +LLLTFF  E    LI    +F+  PPL+++T+G+KS Y  +EE  +         L+  
Sbjct: 534 TLLLTFFNNEPFNQLIRSGRIFIAQPPLYKMTKGSKSTYIKNEEALEDFIISNSAVLKSM 593

Query: 605 KKHG----------KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINK-----DL 649
           KK+           K K  + RFKGLGEM   +L  T +D    TLL+V  +       +
Sbjct: 594 KKNSEEFKNSFEMEKAKYTLQRFKGLGEMNPEELWNTTLDPKNNTLLKVNYSSSCDKLAM 653

Query: 650 NSLKDTQ------DSINKLMGTKADERFKFIQERASFIDDVG 685
              ++T       +  + LMG    +R  FI   A  ++++ 
Sbjct: 654 EGSEETSPSPEDIEIFDILMGDDVSKRKNFINTNAINVNNLD 695


>gi|307128690|ref|YP_003880720.1| DNA gyrasesubunit B [Candidatus Sulcia muelleri CARI]
 gi|306483152|gb|ADM90022.1| DNA gyrase B subunit [Candidatus Sulcia muelleri CARI]
          Length = 638

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 254/652 (38%), Positives = 380/652 (58%), Gaps = 23/652 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY + +I+ ++G+E VR+RP MYIG    + LHH+  EV+DN++DE ++G+ N I V++ 
Sbjct: 2   NYTSKNIQYIDGIEHVRLRPSMYIGDIGIQGLHHMVYEVVDNSIDESLSGFCNKIYVTIH 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +T++DNGRGIPV+ H K    S LE+++T + AGGKFDN++Y++SGGLHGVGIS V
Sbjct: 62  KDNSITILDNGRGIPVDLHKK-KGISALELVMTKIGAGGKFDNNSYKVSGGLHGVGISCV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L   V R   I+ QK+SRGIP+S +    K  NK GT+I+F+ D  IF     +
Sbjct: 121 NALSSNLIAKVYRNGKIYEQKYSRGIPISKINIIGKCHNKVGTKISFKADKLIFKKI-KY 179

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           + + L+   +  +YL+  +      ++E  +K G  +K+ F+   G+K +L    +    
Sbjct: 180 NYSILMNRLRELSYLNKGLSIYLLDERE-IDKNGNFKKKIFFSKKGIKEFLIFIEKKNDN 238

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           I          KK   +  +E A+ +      +I SY N I T +GGTH SG + ALT+ 
Sbjct: 239 IIYI-------KKKNLKLELELAMRFNSSFKEKIYSYVNNINTSQGGTHISGFKRALTKT 291

Query: 342 IKK--YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +KK  Y      K  I I   +L      IL++ I  P+F GQ K KLV+ +    VE  
Sbjct: 292 LKKFFYKFFPLKKNKIEITGKNLREGLTAILAIRIINPQFEGQIKNKLVNNEIIGLVEKI 351

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
           +      +  +N     K+L+ +    + +   +K RE+  K       LP KLADCS N
Sbjct: 352 INKHISIFFKKNIFFLKKILKKIFLSVKAQKTLKKARELINKKTSIHKFLPIKLADCSFN 411

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
             +  E+++VEGDSAGG+AKQ R R  QAVLPLRGKILNV      KI +N++I +++ A
Sbjct: 412 DPNLCEIYLVEGDSAGGTAKQGRERKFQAVLPLRGKILNVEKNIINKIFSNEEIKNIISA 471

Query: 520 LGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           LG     +        ++LRY+K+IIMTDAD+DG+HI++L+LT F++ M  LIE+ ++++
Sbjct: 472 LGVYIFFEKKKINLNIDNLRYKKIIIMTDADIDGSHISTLILTLFFKYMRILIEKGYIYI 531

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
            +PPLF I    K  YA +E+ + KIL++ K +   KI + R+KGLGEM A QL ET M+
Sbjct: 532 ATPPLFLIKTFNKKFYAWNEKERNKILKKLKMNSLKKISVQRYKGLGEMNAEQLWETTMN 591

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
              RTL +V I+    +LK  ++    LMG     R KFI++   F  ++ T
Sbjct: 592 PINRTLRKVTIS----NLKIAKNIFYMLMGNNVIPRKKFIEKNYIFA-NIDT 638


>gi|269314035|gb|ACZ36919.1| DNA gyrase B [Mycobacterium chelonae]
          Length = 651

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 239/664 (35%), Positives = 364/664 (54%), Gaps = 47/664 (7%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y A SI ILEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +AGYA  +EV++  
Sbjct: 1   YSADSITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNSVDEAMAGYATTVEVTMLE 60

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G + V D+GRGIPV  H       T+++++T LHAGGKFD+ +Y +SGGLHGVGISVVN
Sbjct: 61  DGGIQVKDDGRGIPVAMH--ASGIPTVDVVMTQLHAGGKFDSDSYAVSGGLHGVGISVVN 118

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS ++ + + R    + Q ++  +P +   ++     K GT + F  DP+IF     +D
Sbjct: 119 ALSTKVELEILRDGHEWQQVYTASVPGTL--QQGAATKKTGTTVRFWADPEIFET-TTYD 175

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDK-------------------------EIAEKYGIP 258
              + +  Q +A+L+  +    + ++                           +      
Sbjct: 176 FETVARRLQEQAFLNKGLTIKLTDERVSNADVTDEVVSDTAEAPKTAEEQAAESAAPHKV 235

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +   F++P GL  +++     +S I + I     + +G     VE A+ W       + +
Sbjct: 236 KNRVFHYPDGLVDFVKHINRTKSAIHTTIVDFSGKGEGH---EVEIAMQWNAGYSESVHT 292

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMISAVGILSVFIR 375
           + NTI T EGGTHE G R ALT  + KY   +    ++  ++  DD+      ++SV + 
Sbjct: 293 FANTINTHEGGTHEEGFRAALTTVVNKYAKEKKLLKEKDTNLTGDDIREGLAAVISVKVG 352

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           EP+F GQTKTKL + + +  V+    +   H+   NP +A  ++   +  ++ R+  RK 
Sbjct: 353 EPQFEGQTKTKLGNTEVKSFVQKVCNEQLQHWFDSNPADAKTVVNKAVSSAQARIAARKA 412

Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE V RK+A     LPGKLADC       +EL++VEGDSAGGSAK  R+   QA+LPLRG
Sbjct: 413 RELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKSGRDSMFQAILPLRG 472

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           KI+NV  A  +++  N ++  ++ ALG     ++    LRY K+++M DADVDG HI++L
Sbjct: 473 KIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIAKLRYHKIVLMADADVDGQHISTL 532

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIE 613
           LLT  ++ M  L+E  H+FL  PPL+++     +  +A+ +  +  ++E   K GK KI 
Sbjct: 533 LLTLLFRFMRPLVEHGHIFLAQPPLYKLKWQRSQPEFAYSDRERDGLMEAGLKAGK-KIN 591

Query: 614 ----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669
               I R+KGLGEM A +L ET MD + R L +V ++          +  + LMG   + 
Sbjct: 592 KDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELFSILMGEDVEA 647

Query: 670 RFKF 673
           R  F
Sbjct: 648 RRSF 651


>gi|269314037|gb|ACZ36920.1| DNA gyrase B [Mycobacterium immunogenum]
          Length = 651

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 239/664 (35%), Positives = 364/664 (54%), Gaps = 47/664 (7%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y A SI ILEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +AGYA  +EV++  
Sbjct: 1   YSADSITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNSVDEAMAGYATTVEVTMLA 60

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G + V D+GRGIPV  H       T+++++T LHAGGKFD+ +Y +SGGLHGVGISVVN
Sbjct: 61  DGGIQVKDDGRGIPVAMH--ASGIPTVDVVMTQLHAGGKFDSDSYAVSGGLHGVGISVVN 118

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS ++ + + R    ++Q ++  +P +   ++     K GT + F  DP+IF     +D
Sbjct: 119 ALSTKVELEILRDGHEWNQVYTASVPGTL--QQGGATKKTGTTVRFWADPEIFET-TTYD 175

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-------------------------YGIP 258
              + +  Q +A+L+  +    + ++                                  
Sbjct: 176 FETVARRLQEQAFLNKGLTIKLTDERVSDSDVTDEVVRDTAEAPKTAEEQAAESAAPHKV 235

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +   F++P GL  +++     +S I + I     + +G     VE A+ W       + +
Sbjct: 236 KNRVFHYPDGLVDFVKHINRTKSAIHTTIVDFSGKGEGH---EVEIAMQWNAGYSESVHT 292

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMISAVGILSVFIR 375
           + NTI T EGGTHE G R ALT  + KY   +    ++  ++  DD+      ++SV + 
Sbjct: 293 FANTINTHEGGTHEEGFRAALTSVVNKYAKEKKLLKEKDSNLTGDDIREGLAAVISVKVG 352

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           EP+F GQTKTKL + + +  V+    +   H+   NP +A  ++   +  ++ R+  RK 
Sbjct: 353 EPQFEGQTKTKLGNTEVKSFVQKVCNEQLQHWFDSNPADAKTVVNKAVSSAQARIAARKA 412

Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE V RK+A     LPGKLADC       +EL++VEGDSAGGSAK  R+   QA+LPLRG
Sbjct: 413 RELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKSGRDSMFQAILPLRG 472

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           KI+NV  A  +++  N ++  ++ ALG     ++    LRY K+++M DADVDG HI++L
Sbjct: 473 KIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIAKLRYHKIVLMADADVDGQHISTL 532

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIE 613
           LLT  ++ M  L+E  H+FL  PPL+++     +  +A+ +  +  ++E   K GK KI 
Sbjct: 533 LLTLLFRFMRPLVEHGHIFLAQPPLYKLKWQRSQPEFAYSDRERDGLMEAGLKAGK-KIN 591

Query: 614 ----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669
               I R+KGLGEM A +L ET MD + R L +V ++          +  + LMG   + 
Sbjct: 592 KDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELFSILMGEDVEA 647

Query: 670 RFKF 673
           R  F
Sbjct: 648 RRSF 651


>gi|283458293|ref|YP_003362912.1| type IIA topoisomerase, B subunit [Rothia mucilaginosa DY-18]
 gi|283134327|dbj|BAI65092.1| type IIA topoisomerase, B subunit [Rothia mucilaginosa DY-18]
          Length = 724

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 244/728 (33%), Positives = 350/728 (48%), Gaps = 68/728 (9%)

Query: 10  STLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT 69
           +  PP    S  +      IP         AS NY A  + +LEGLE VR RPGMYIG T
Sbjct: 4   TRTPPGGTRSPPQTYSPERIPV--------ASSNYTARHLSVLEGLEAVRKRPGMYIGST 55

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
           D + L H   E+IDN++DE +AG+   I+V L  +G + V D+GRGIP +  P+    S 
Sbjct: 56  DSRGLMHCLWEIIDNSVDEALAGFGQSIQVILYRDGSVEVRDDGRGIPTDIEPR-TGLSG 114

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
           +E++ T LHAGGKF   +Y  SGGLHGVG SVVNALS  L V V R +  +   F  GIP
Sbjct: 115 VEVVFTKLHAGGKFGGGSYNASGGLHGVGASVVNALSSRLDVQVDRGSKTYQMSFRHGIP 174

Query: 190 LSPLEKKEKVRNK----------------------RGTRITFRPDPKIFGDKAGFDAARL 227
                 +                             GTR+ +  DP+IF   A F    L
Sbjct: 175 GFFESGRTPKPEDPFTPATEGTDALQIVGRAKRGVTGTRVRYWADPQIFTPDAKFSYEDL 234

Query: 228 LKMTQSKAYLSGRVKTCWSCDKE--IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
               +  A+L   ++ C   ++          P +E F + GG+  +++    +  +  +
Sbjct: 235 AARVRQTAFLIPGLRICIRDERRLPGTPGELEPHEEVFQYDGGISEFVEFLAHDERITDT 294

Query: 286 EIFTGKTE----------------KKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328
             F+G                           V+ A+ W         S+ N I T +GG
Sbjct: 295 WRFSGSGSFTETVPVLGEDGRSQLTDVERDCEVDVALRWGIGYETTVRSFVNIIATPKGG 354

Query: 329 THESGLRVALTRGIKKYAELTQNKRAI---SIISDDLMISAVGILSVFIREPEFAGQTKT 385
           TH +G    L R ++K+      K  +    I  DD++     +L+V + EP+F GQTK 
Sbjct: 355 THTTGFEQGLLRVMRKHLADNARKYKVGNDKIEKDDVLAGLTAVLTVRLAEPQFEGQTKE 414

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQN----PIEATKLLEWVIERSEERLRRRKQRE-VNR 440
            L +   ++ V   + D     L         +A  L E V+   + R+  R  +E   R
Sbjct: 415 ILGTPAVRQIVSKVVGDALKARLESTARAEKAQAAALCEKVVSEMKTRVSARIHKETQRR 474

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           KTA+    +P KL DC       +ELFIVEGDSA G+A+ AR+ S QA+LP+RGKILN  
Sbjct: 475 KTALESSSMPTKLVDCRSTNVEHSELFIVEGDSALGTARLARSSSYQALLPIRGKILNTQ 534

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
            A    +  N +   L+Q +G  +   +  +  RY KVI+MTDADVDGAHI +LLLT FY
Sbjct: 535 RASVTDVLANAECAALIQVIGAGSGRTFDLDSARYGKVIMMTDADVDGAHIRTLLLTLFY 594

Query: 561 QEMYDLIEQKHLFLISPPLFR---ITQGT--KSVYAHDEEHKQKILEEFKKHG-KGKIEI 614
           + M  LIE   ++   PPL R   + +G   + VY + E+   ++L+  ++ G   K  I
Sbjct: 595 RYMRPLIEAGRVYAAVPPLHRVEVVRRGKPNEMVYTYSEKQLHELLDSLQEQGVSYKEPI 654

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
            R+KGLGEM A QL ET MD   R L R+ I       +  + + + LMG++   R +FI
Sbjct: 655 QRYKGLGEMDADQLAETTMDPRHRMLRRIRIED----AEAAERAFSLLMGSEVAPRKEFI 710

Query: 675 QERASFID 682
              A  +D
Sbjct: 711 IAGAHQLD 718


>gi|108763546|ref|YP_630703.1| type II DNA topoisomerase subunit B [Myxococcus xanthus DK 1622]
 gi|108467426|gb|ABF92611.1| type II DNA topoisomerase, B subunit [Myxococcus xanthus DK 1622]
          Length = 643

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 270/652 (41%), Positives = 378/652 (57%), Gaps = 17/652 (2%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  + Y  + I++LEGLEPVR RP MYIGGTD    HHL  E++DN++DEVI G+A  +E
Sbjct: 3   TKKETYTGADIQVLEGLEPVRKRPAMYIGGTDSTGYHHLLWEILDNSVDEVINGFATTVE 62

Query: 99  VSLDGNG-FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           V+L  +G  +T+VDNGRGIPV+  PK+  K  +E+ILTTLHAGGKF+   Y  SGGLHGV
Sbjct: 63  VTLHKDGRSVTIVDNGRGIPVDIMPKY-KKPAVEVILTTLHAGGKFEQGNYIHSGGLHGV 121

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNAL+ +L V +        Q F+RG   S L+     R   GT +TF PDP+IFG
Sbjct: 122 GSSVVNALARKLVVEIKLHGKKHVQTFARGKATSTLKVDGAARG-TGTSVTFEPDPEIFG 180

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +K  FDA  + +  ++K+YL   +   W       E    P    +   GG+  YL   +
Sbjct: 181 EKLKFDAELVRERLEAKSYLHKGMTVVWKD-----ETSSPPTSVTYKHDGGIAEYLTKVV 235

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRV 336
             R+       +        +   +E A+AW E  +  I SY N I T  GGTHE+GLR 
Sbjct: 236 TERNKPLVPAGSAAFYHARDNGVRLEAALAWTEATDEHIRSYVNGIPTPLGGTHEAGLRS 295

Query: 337 ALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           A+ + ++ Y E      + +++ ++D+      ILS ++ EP+F GQTK +L + +    
Sbjct: 296 AVVKAVRNYIETHGIAPKGVTLTAEDIREGITAILSTYVVEPQFQGQTKGRLNNPEVSGQ 355

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE--VNRKTAIRKLRLPGKL 453
           V+  LR   + +L  N   A  ++  ++  +  R   R   +    +     +L LPGKL
Sbjct: 356 VDGVLRPALEKWLNDNKSIAESVVARIVLAARAREASRAASQAVSRKTAVSHRLNLPGKL 415

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS      +ELFIVEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A ++K+  N+++
Sbjct: 416 ADCSSTDPGLSELFIVEGDSAGGSAKQGRDRRTQAILPLRGKVLNAEQASTDKVTTNKEL 475

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            D+V ALGC   S +    LRY +V ++ DAD DG HIA+LLLTFFY+ +  LIE   + 
Sbjct: 476 QDIVSALGCGIGSDFDISKLRYGRVFLLMDADSDGHHIATLLLTFFYRHLRPLIESGAIH 535

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           +  PPL+R+  G ++ +A DE  + +I++E K  G  K  I RFKGLGEM   +LKET +
Sbjct: 536 IAQPPLYRVDIGKETYWALDEPDRDRIIKE-KTKGNAKPNIMRFKGLGEMTPDELKETTL 594

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D   R  LRV I+K L    +T   IN LMG     RF+FI ERAS + D+ 
Sbjct: 595 DPKHRMSLRVTIDKPL----ETDRLINDLMGKDVSARFRFIMERASEVQDLD 642


>gi|225374474|ref|ZP_03751695.1| hypothetical protein ROSEINA2194_00089 [Roseburia inulinivorans DSM
           16841]
 gi|225213712|gb|EEG96066.1| hypothetical protein ROSEINA2194_00089 [Roseburia inulinivorans DSM
           16841]
          Length = 638

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 238/655 (36%), Positives = 346/655 (52%), Gaps = 34/655 (5%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YD  SI +LEGLE VR RPGMYIG    K L+HL  E++DN++DE +AG  + I V+L+ 
Sbjct: 4   YDEHSISVLEGLEAVRKRPGMYIGSVSRKGLNHLIYEIVDNSVDEHLAGACDTIHVTLEK 63

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           NG  TV DNGRG+PV  H K    S   ++ TTLHAGGKFD+S Y+ SGGLHGVG SVVN
Sbjct: 64  NGSCTVEDNGRGVPVGMHAK--GVSAARLVYTTLHAGGKFDDSAYKTSGGLHGVGSSVVN 121

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGTRITFRPDPKIFGD 218
           ALS  + V ++R+  I   ++ RG+P+  LE     K  K +   GT++ F PDP+IF  
Sbjct: 122 ALSVYMDVEISREGYIHHDRYERGVPVVELENGLLPKIGKTKK-TGTKVNFLPDPEIFEK 180

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    +       AYL+ ++   +   +         E   ++   G++ +++   +
Sbjct: 181 -TRFKEDEIKSRMHETAYLNPKLTIIYEDRR-----GEEVEHIVYHEEDGIRGFVKDLNK 234

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N  ++  ++   K E +G    TVE A  +  E    I  +CN I   EGGTH +G +  
Sbjct: 235 NTEVLH-DVVYFKGESEGI---TVEAAFQYTNEFHENILGFCNNIFNAEGGTHITGFKTV 290

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            T  I  YA       ++ ++    D+      ++S+   +P F GQTKTKL + DA + 
Sbjct: 291 FTTVINSYARELGILKEKDVNFTGADVRNGMTAVVSIKHPDPRFEGQTKTKLDNQDAAKA 350

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
                 D    +  +N      ++    + ++ R    + +              GKLA+
Sbjct: 351 TAKVTGDEIQLFFDKNLETLKTVISCAEKAAKIRKTEERAKTNLLTKQKFSFDSNGKLAN 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C    A   E+FIVEGDSAGGSAK AR+R+ QA+LP+RGKILNV  A  +K+  N +I  
Sbjct: 411 CESRDASICEIFIVEGDSAGGSAKTARDRNYQAILPIRGKILNVEKASIDKVLANAEIKT 470

Query: 516 LVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           ++ A GC       + +    LRY+K+IIM DADVDGAHI++LLLT FY+ M +LI + H
Sbjct: 471 MINAFGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIYEGH 530

Query: 572 LFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           +++  PPL+++  G  +  Y +D+   +K     K H      + R+KGLGEM A QL E
Sbjct: 531 VYVAMPPLYKVIPGKGEEEYLYDDAALEKYR---KAHKGSNFTLQRYKGLGEMDAEQLWE 587

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T ++   R L R+EI       +   D    LMG     R  FI E A   + + 
Sbjct: 588 TTLNPATRMLKRIEIEDG----RMASDITELLMGNDVPPRKTFIYEHAHDAE-LD 637


>gi|290243050|ref|YP_003494720.1| DNA topoisomerase (ATP-hydrolyzing) [Thioalkalivibrio sp. K90mix]
 gi|288945555|gb|ADC73253.1| DNA topoisomerase (ATP-hydrolyzing) [Thioalkalivibrio sp. K90mix]
          Length = 650

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 244/648 (37%), Positives = 350/648 (54%), Gaps = 10/648 (1%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            A   A+  Y + SI++LEGLEPVR RPGMYIGGTD   L HL +E++DNA+DE IAG+ 
Sbjct: 2   SAIPEAARQYTSESIQVLEGLEPVRKRPGMYIGGTDSSGLRHLLNEILDNAVDEAIAGHG 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + IEV    +G  +V DNGRGIP++ H +        +++TTLHAGGKFDN+ Y++SGGL
Sbjct: 62  DEIEVVFHQDGSYSVNDNGRGIPIDMHRE-KGMHAAALLVTTLHAGGKFDNAAYKVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG +V NA+S    + + R    + Q F+ G   S  E K    +  GT I F PD  
Sbjct: 121 HGVGAAVTNAMSTRFDMDIRRDGQRYQQTFTEGGAPSDPEIKRYTGSYTGTLIRFWPDLA 180

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
            F + A  D   +    +  AYL   ++     ++  +E    P +  F F    +    
Sbjct: 181 RFDEDAEIDFDFMADRMKRTAYLVPGLQLSIR-EEVASEGGDEPRQAVFRFESFSQIIED 239

Query: 275 TKLENRSLISSEIFTGKTEK-KGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESG 333
             +++   IS  I     E   G     V  A+ W E N  + +    I+    GTH +G
Sbjct: 240 LSVDSGDAISEIIEADSAEHIDGQGEIEVAVALRWHERNRTVLAGYANIIPTADGTHMTG 299

Query: 334 LRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           LR A+T+ +  YAE     R    +  DD+    +  ++V + +P F GQTK KL +   
Sbjct: 300 LRKAVTQAVNNYAEANNLLRGNQELKGDDIQAGLIAAVAVRLADPLFQGQTKEKLKNGPV 359

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV--NRKTAIRKLRLP 450
              V  A+R   DH   +NP  A  ++E      + R    K  E+  NRK+ I    LP
Sbjct: 360 TGVVSRAIRAALDHAFEENPKMARAIVEKAKLAQKAREAADKAAEMVVNRKSVISATALP 419

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +ELFIVEGDSAGGSAK  R R  QA+LPL+GKILN   A   K+  +
Sbjct: 420 GKLADCQEQDPSKSELFIVEGDSAGGSAKSGREREYQAILPLKGKILNTYRADPAKVLKS 479

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
            ++ +L+ ALGC  +S +  E LRY +++I+ DAD DG HIA+L+LT+F+    +LIE  
Sbjct: 480 DEVKNLMLALGCGPKSHFDLEKLRYHRIVILADADSDGHHIATLVLTYFHTNAPELIESG 539

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPL+R+ +G +S Y  D+   +  + + K     K ++ RFKGLGEM A QL E
Sbjct: 540 YVYIALPPLYRVRKGKQSAYLKDDRELEAFMAQQK--NPDKWQVQRFKGLGEMNAEQLWE 597

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
            AMD   R + RV+ ++         +    LMG +   R  FI+E A
Sbjct: 598 AAMDPETRRIARVQYSEQGREGD--NEVFEVLMGAEVPPRRAFIEEYA 643


>gi|313123649|ref|YP_004033908.1| DNA topoisomerase iv subunit b [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280212|gb|ADQ60931.1| DNA topoisomerase IV subunit B [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 643

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 237/649 (36%), Positives = 350/649 (53%), Gaps = 29/649 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
             + YD SSI+IL GLE VR RPGMYIG TD   L+ L  E++DN++DE +AG+   I V
Sbjct: 2   PKNTYDDSSIQILHGLEAVRKRPGMYIGSTDIHGLNQLVYEIVDNSVDEAMAGFGQEINV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  +TV D GRG+P   H     + T+E+ILT LHAGGKF    Y+ SGGLHGVG 
Sbjct: 62  TIHEDNSVTVQDFGRGMPTGMH--ASGRPTIEVILTVLHAGGKFTEQNYKTSGGLHGVGS 119

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           SVVNALS  + V V R    + ++F  G  P+  L        K GT ITF+PDP IF  
Sbjct: 120 SVVNALSSYMKVHVVRDGKAYEEEFKNGGHPIGTLRCLGATEEKTGTTITFKPDPMIFST 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              ++   + +  +  A+L   VK   + ++           + F +  G+++++    E
Sbjct: 180 T-KYNYETIQERIRESAFLLKGVKFTLTDERTPN------HHDVFQYDDGIESFVSYLNE 232

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVA 337
            +  I       +  + G     +E+A  + +   E   S+ N + T +GG+HE G R  
Sbjct: 233 GKGTIGKVF-YFEGSQDG---MEIEFAGQYSDSYSENFVSFVNNVRTADGGSHEVGARSG 288

Query: 338 LTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
            TR    YA+      K+  ++   D       +LSV I E   EF GQTK KL +  A+
Sbjct: 289 FTRAFNDYAKKQGLLGKKDKNLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQAR 348

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLPG 451
             V++ + +   +YL++N   A  L++  +   + R   +K R+ +R      +K  L G
Sbjct: 349 SAVDSIVYEKLSYYLLENGEWAQDLVKKALRARDAREAAKKARDESRNGKKRHKKEVLSG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N+
Sbjct: 409 KLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQRAKLADIFKNE 468

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    ++++ ED  Y+K+IIMTDAD DGAHI  LLLTFFY+ M  +IE   
Sbjct: 469 EINTMIHTIGAGVGTEFKVEDSNYDKIIIMTDADDDGAHIQILLLTFFYRYMRPMIEAGK 528

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPL+RI++   ++YA  +E + +  ++  K       + RFKGLGEM A QL ET
Sbjct: 529 VYIALPPLYRISKKQTNLYAWTDEERDEEEKKVGK----GYALQRFKGLGEMNADQLWET 584

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            M+   R L+RV I+      +  +  +  LMG +A  R K+I+E   F
Sbjct: 585 TMNPESRMLIRVRIDD----AQLAERRVTTLMGDQASARRKWIEENVKF 629


>gi|256370829|ref|YP_003108653.1| DNA gyrase, B subunit [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007413|gb|ACU52980.1| DNA gyrase, B subunit [Acidimicrobium ferrooxidans DSM 10331]
          Length = 647

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 248/655 (37%), Positives = 368/655 (56%), Gaps = 21/655 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
            +     +Y A+ I +LEGLE VR+RPGMYIG T    LHHL  EV+DNA+DEV+AG   
Sbjct: 8   KSLEPEASYTAADIVVLEGLEHVRLRPGMYIGSTGPSGLHHLVWEVVDNAVDEVMAGACT 67

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I+V++  +G   V DNGRGIPV+ HP  P+KS  E++LT L+AGGKF    Y++SGGLH
Sbjct: 68  EIDVTILADGGCRVEDNGRGIPVDPHPSDPSKSAAEVVLTQLNAGGKFGTGGYKVSGGLH 127

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           GVG+SVVNALS  L + V R  + +  +F   G P  PLE+      +RGT +TF PDP 
Sbjct: 128 GVGVSVVNALSARLVLEVHRDGSTYRMEFVKGGTPTGPLERIGSSGGRRGTVVTFWPDPT 187

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F A R+L+  Q  A+L+  V   +  ++   E         F + GG+  +++
Sbjct: 188 IFED-TEFSAQRILERLQVIAFLNKGVVVRFRDERPGREHEQT-----FSYAGGIVDFVR 241

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESG 333
              E +  + +++      ++      VE A +W       + ++ N I T+EGG H  G
Sbjct: 242 HLNEPKGPLFAKVGYYAASEED---MEVEVAFSWNTTFYETLFTFANGISTEEGGMHAEG 298

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALT+ I +YA       +R  ++  +D+      I+SV +  P+F GQTKTKL ++ 
Sbjct: 299 FRKALTQVINRYARARNLLKERDENLEGNDIREGMTTIVSVRLVNPQFEGQTKTKLGNVS 358

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLP 450
            +  VE    +    +L +NP EA  +++  I  +      R+ +    RK+ +    LP
Sbjct: 359 VRSFVERVTNEHLATWLEENPREAQAIVQKAIVAQRARLAARQARELTRRKSGLESAGLP 418

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL DC+      +ELFIVEG+SAGG+  + R+   QAVLP+RGKILNV  A  +K+ +N
Sbjct: 419 GKLTDCTSRDPSESELFIVEGNSAGGTTIKGRDPKTQAVLPIRGKILNVERARLDKMLSN 478

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           Q+I  L+ A+G     ++  +  RY KVII+ DAD DG+HI +LLLTFF+++M  L+E  
Sbjct: 479 QEIQSLIAAIGAGVGDEFDIKKARYHKVIILADADPDGSHIRTLLLTFFFRQMRPLVEAG 538

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
            ++   PPL+    GT+ VY  +E  + + LE    H K  +   R KGLGEM   +L++
Sbjct: 539 MVYAAQPPLYSTLLGTEKVYIKNEAERLRFLEAHPNHKKPFL---RLKGLGEMDFDELRD 595

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T +  ++RTLL+V I +         +  + LMG   ++R +FIQE A     + 
Sbjct: 596 TTLHQDRRTLLKVTIEQ----AAIADEVCSVLMGDDVEQRRRFIQENAGDARFID 646


>gi|261253833|ref|ZP_05946406.1| topoisomerase IV subunit B [Vibrio orientalis CIP 102891]
 gi|260937224|gb|EEX93213.1| topoisomerase IV subunit B [Vibrio orientalis CIP 102891]
          Length = 626

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 248/645 (38%), Positives = 362/645 (56%), Gaps = 24/645 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y+A  + +LEGL+PVR RPGMY   T+ +  +HL  EVIDN++DE +AG+A  I+V 
Sbjct: 2   TEQYNAKDLSVLEGLDPVRHRPGMY---TETERPNHLAQEVIDNSVDEALAGHAKKIKVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+    S +E+I+T LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-KGISGVELIMTKLHAGGKFSNDNYKFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDK 219
           VVNALS  + VTV R   I    F  G  ++ L       +   GT + F PD + + D 
Sbjct: 118 VVNALSKRVEVTVRRGGEIHEIAFEGGNAVTELTVTGTCGHRNTGTAVHFWPD-EKYFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F A RL+   ++KA L   ++  +S      E        ++++  GLK YL   ++ 
Sbjct: 177 YKFSALRLVNNLRAKAVLCPGLEITFSDKVNNEE-------HKWFYEDGLKDYLSEGVKG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
             ++ +E + G+         T               SY N + T +GGTH +GLR  L 
Sbjct: 230 YEVLPAEPYIGEFTADTEM-ATWAVIWQPEGGEMITESYVNLVPTKQGGTHVNGLRQGLL 288

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R + +  DD+      +LSV +++P+FAGQTK +L S      V  
Sbjct: 289 DAMREFCEFRNLLPRGVKLTGDDIFDRCSYVLSVKMQDPQFAGQTKERLSSRQTAAFVSG 348

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L + P  A +L E  I  +  R+R    ++V RK       LPGKL DCS 
Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEVCIANAHRRMR--ASKKVVRKKVASGPALPGKLTDCSV 406

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
              + TE+F VEGDSAGGSAKQAR+R  QAV+PLRGKILN     ++++  +Q++ D+  
Sbjct: 407 QDLNRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG    +    + LRY K+ I+ DAD DG HIA+LL   F +    L+E  H+++  PP
Sbjct: 467 ALGIDPDNDNL-DSLRYGKICILADADSDGLHIATLLCALFTRHFRALVEAGHIYVAMPP 525

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           LFRI  G +  YA DE+ K+ ILE   K  K KI + RFKGLGEM   QL+ET MD N R
Sbjct: 526 LFRIDCGKEVFYALDEDEKEGILERLSKK-KAKINVQRFKGLGEMNPLQLRETTMDPNTR 584

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            L+++ I+ +    + T + ++ L+G K AD+R  ++Q      +
Sbjct: 585 RLVQLTIDDN----EQTMEMMDMLLGKKRADDRRHWLQSNGDMAE 625


>gi|320095115|ref|ZP_08026824.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Actinomyces sp. oral
           taxon 178 str. F0338]
 gi|319977982|gb|EFW09616.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Actinomyces sp. oral
           taxon 178 str. F0338]
          Length = 680

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 240/678 (35%), Positives = 355/678 (52%), Gaps = 30/678 (4%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +        +  Y AS I +LEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +A
Sbjct: 8   ADIDNKTDGAATYGASDITVLEGLEAVRKRPGMYIGSTGERGLHHLVYEVVDNSVDEALA 67

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           GYA+ IEV++  +G + VVDNGRGIPV+ HP   ++ T+E+++T LHAGGKF    Y +S
Sbjct: 68  GYADHIEVTIQSDGGIKVVDNGRGIPVDEHP-TEHRPTVEVVMTILHAGGKFGGGGYAVS 126

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVGISVVNALS  +   + RQ  ++   F+ G       ++ +   + GT   F P
Sbjct: 127 GGLHGVGISVVNALSTRVDTEIRRQGHVWRMSFANGGTPVTPLERGEETTETGTTQVFYP 186

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------------- 258
           DP IF     FD   L +  Q  A+L+  ++   + ++E A + G               
Sbjct: 187 DPSIFET-VEFDFETLRQRFQQMAFLNKGLRITLTDERENAIEEGDEIAGAPDEDPQEAG 245

Query: 259 --EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PE 314
                 + +  GL+ Y++     +   +        E +      +VE A+ W       
Sbjct: 246 GRRSVTYCYEHGLRDYVEYLDSAKKTDTINNEIIDFEAENDEGTMSVEIAMQWTGAYSSS 305

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSV 372
           + ++ NTI T EGG HE G R ALT  + +Y         +  ++  DD+      ++S+
Sbjct: 306 VHTFANTINTTEGGMHEEGFRTALTSLVNRYGRDKGLIRDKDDNLTGDDVREGLTAVISI 365

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
            + EP+F GQTKTKL + +A+  V   +      +   +P +A  ++         R+  
Sbjct: 366 KLTEPQFEGQTKTKLGNTEARTFVAQQVYSKLTDWFDAHPADAKAIIAKGQAAQAARVAA 425

Query: 433 RKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           RK RE  R+   +    +PGKL DCS       E+FIVEGDSAGGSA   R+   QA+LP
Sbjct: 426 RKAREATRRKGVLESASMPGKLRDCSSRTPSECEIFIVEGDSAGGSAVGGRDPERQAILP 485

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHI 551
           +RGKILNV  A  ++  ++  I  L+ A G     ++  E LRY K++IM DADVDG HI
Sbjct: 486 IRGKILNVEKARLDRALSSDTIRSLITAFGTGIGEEFDIEKLRYGKIVIMADADVDGQHI 545

Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ-GTKSVYAHDEEHKQKILEEFKKHGKG 610
           A+LLLT  ++ M  LIE  H F+  PPL+R+    +   +A+ ++ + ++L       K 
Sbjct: 546 ATLLLTLLFRYMRPLIEGGHTFIAMPPLYRLKWTNSDHEFAYSDKERDELLAVGAAANKR 605

Query: 611 KIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667
             +   I R+KGLGEM   +L ET MD   R L +V +++      D  ++   LMG   
Sbjct: 606 LPKEGGIQRYKGLGEMNDHELWETTMDPEHRILKQVTLDE----AADADETFTILMGDDV 661

Query: 668 DERFKFIQERASFIDDVG 685
           D R  FIQ  A+ +  + 
Sbjct: 662 DRRRTFIQRNATDVRFLD 679


>gi|227872280|ref|ZP_03990639.1| DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus F0268]
 gi|227841892|gb|EEJ52163.1| DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus F0268]
          Length = 642

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 251/660 (38%), Positives = 357/660 (54%), Gaps = 33/660 (5%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +Y+A SI +LEGLE VR RPGMYIG    K L+HL  E++DN++DE +AGY   I V+
Sbjct: 2   AKSYNADSITVLEGLEAVRRRPGMYIGSIGSKGLNHLIYEIVDNSVDEHLAGYCTEISVT 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +G  TV DNGRGIPV+ H K    S   I++TTLHAGGKFD+S+Y+ SGGLHGVG S
Sbjct: 62  LHKDGSCTVRDNGRGIPVDRHKK--GISAERIVMTTLHAGGKFDDSSYKTSGGLHGVGSS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK----KEKVRNKRGTRITFRPDPKIF 216
           VVNALS+ + V V +   I+  ++ RGIP + L            + GT  TF PD  IF
Sbjct: 120 VVNALSNYMRVRVYQNGKIYEDEYERGIPKTELIDGLLPVVGKTKETGTETTFIPDDSIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                F    L+      AYL+  +   +  ++            ++Y P GL  ++   
Sbjct: 180 EK-TRFKEEWLMSRLHETAYLNPTLHLHFRDER-----GEEVVSRDYYEPEGLHAFVAEL 233

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335
           ++++S I S I + + +   + +  VE A  + +   E    +CN I T EGGTH  GL+
Sbjct: 234 VKDQSKIVSPIISFQGK---SGKTEVECAFQFTDSFEENLLGFCNGIYTQEGGTHIVGLK 290

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
               + +  YA       ++  +    D     V +LSV   EP F GQTKTKL SL+A 
Sbjct: 291 TKFAQMMNSYARQLGILKEKDPNFTGADTRNGMVTVLSVKYPEPVFEGQTKTKLASLEAA 350

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
           + V + + +  + Y  +N      +L    + ++ R +  K +      +       GKL
Sbjct: 351 KDVSSVVGEELERYFDRNLEIVKAILSCAEKSAKIRKQEEKAKVNLLSKSKYSFDSNGKL 410

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           A+C        E+FIVEGDSAGGSAK +RNR  QA+LPLRGKILNV  A  +K+  N +I
Sbjct: 411 ANCISKTPEECEIFIVEGDSAGGSAKTSRNRHTQAILPLRGKILNVEKASMDKVLANAEI 470

Query: 514 MDLVQALGCRTR----SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
             ++ A GC       + +    LRY K+I+MTDADVDG+HI +LLLTFFY+ M +LI++
Sbjct: 471 KTMINAFGCGFSEGFGNDFDISKLRYHKIILMTDADVDGSHIDTLLLTFFYRFMPELIQE 530

Query: 570 KHLFLISPPLFRI---TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            H+++  PPL+ +    +  K  Y +DE+    +L   KKHG    E+ RFKGLGEM   
Sbjct: 531 GHIYVSMPPLYLLIPENKKEKPRYLYDEK---ALLAYQKKHGSSGYELKRFKGLGEMNPK 587

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           +L ET ++   R L RVEI       K      + LMGT+   R +FI   A   + +  
Sbjct: 588 ELWETTLNPENRVLKRVEIED----AKLASQVTSMLMGTEVAPRREFIFTHAMEAE-IDA 642


>gi|28492972|ref|NP_787133.1| DNA gyrase subunit B [Tropheryma whipplei str. Twist]
 gi|28572180|ref|NP_788960.1| DNA gyrase subunit B [Tropheryma whipplei TW08/27]
 gi|28410311|emb|CAD66697.1| DNA gyrase subunit B [Tropheryma whipplei TW08/27]
 gi|28476012|gb|AAO44102.1| DNA gyrase subunit B [Tropheryma whipplei str. Twist]
          Length = 649

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 254/657 (38%), Positives = 361/657 (54%), Gaps = 22/657 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +    Y A  I++LEGLE VR RPGMYIG T  + LHHL  E++DN++DE +AGY   I 
Sbjct: 4   TPEPAYGADQIQVLEGLEAVRRRPGMYIGSTGSRGLHHLVYELVDNSVDEALAGYCTKIN 63

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +G + V DNGRGIPV+ HPK    ST++++LTTLHAGGKF +  Y +SGGLHGVG
Sbjct: 64  VAILADGGVRVTDNGRGIPVDIHPK-EGVSTVQVVLTTLHAGGKFGSGGYSVSGGLHGVG 122

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS  L+V V+RQ  +F Q +  G P + LE+ E+  N  GT ITF PD  IF  
Sbjct: 123 SSVVNALSKRLYVEVSRQGFVFRQNYEGGNPTAALERCEET-NATGTAITFWPDDDIFET 181

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L    Q  A+L+  +    + ++  +        E + +  GL  Y+  +  
Sbjct: 182 VC-FEYEVLRSRLQQMAFLNSGLTVSITDERVDSPTN----NETYCYQNGLFDYVMYQNR 236

Query: 279 NRSLI--SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            R       EI   + E K     ++E A+ W   +   I ++ NTI T EGGTHE G R
Sbjct: 237 IRKHEPLHEEIIHFQAENKD-RLMSLEVAMRWTSSSTENIYTFANTINTHEGGTHEEGFR 295

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALT  + +YA       ++  S+  +D+      I+SV + EP+F GQTKTKL + + +
Sbjct: 296 AALTSLVNRYAREKGFLKEKDESLQGEDIREGLTAIISVKLGEPQFEGQTKTKLGNTEMR 355

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGK 452
             V + +      +   +P +A  ++   +  +E RL  ++ RE +RK  +   + +PGK
Sbjct: 356 GYVHHEVNSYLWDWFDSHPAQAKVIISKALLAAEARLAAKRAREASRKRGLFESVSMPGK 415

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L +C       +ELFIVEGDSAGGSA Q R+   QAVLPLRGKILNV  A  +K   N +
Sbjct: 416 LKECQAKDPAVSELFIVEGDSAGGSAIQGRDPLTQAVLPLRGKILNVEKARLDKAIANSE 475

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++ A G      + E   RY K+I+M+DADVDG HI +LLLT  ++ M  LIE  ++
Sbjct: 476 IQAMLTAFGSGIAEDFDESKARYHKIILMSDADVDGQHITTLLLTLLFRYMRPLIESGYV 535

Query: 573 FLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQL 628
           +L  PPL+RI        Y   +  + K L E K  GK   +   I R+KGLGEM   +L
Sbjct: 536 YLAHPPLYRIKWSNSEHDYVFSDRERDKKLAEGKLSGKKIPKENAIQRYKGLGEMNYREL 595

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +T M+   RTL ++ ++          +  + LMG   D R KFIQ  A  +  + 
Sbjct: 596 WDTTMNPATRTLRQITVDDVT----LADEIFSVLMGEDVDSRRKFIQHNARDVRFLD 648


>gi|255326299|ref|ZP_05367385.1| DNA gyrase subunit B [Rothia mucilaginosa ATCC 25296]
 gi|255296753|gb|EET76084.1| DNA gyrase subunit B [Rothia mucilaginosa ATCC 25296]
          Length = 700

 Score =  559 bits (1439), Expect = e-157,   Method: Composition-based stats.
 Identities = 237/698 (33%), Positives = 340/698 (48%), Gaps = 60/698 (8%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           AS NY A  + +LEGLE VR RPGMYIG TD + L H   E+IDN++DE +AG+   I+V
Sbjct: 2   ASSNYTARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALAGFGQSIQV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +G + V D+GRGIP +  P+    S +E++ T LHAGGKF   +Y  SGGLHGVG 
Sbjct: 62  ILYRDGSVEVRDDGRGIPTDIEPR-TGLSGVEVVFTKLHAGGKFGGGSYNASGGLHGVGA 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK----------------- 202
           SVVNALS  L V V R +  +   F  GIP      +                       
Sbjct: 121 SVVNALSSRLDVQVDRGSKTYQMSFRHGIPGFFESGRTPKPEDPFTPATEGTDALQIVGR 180

Query: 203 -----RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE--IAEKY 255
                 GTR+ +  DP+IF   A F    L    +  A+L   ++ C   ++        
Sbjct: 181 AKRGVTGTRVRYWADPQIFTPDAKFSYEDLAARARQTAFLIPGLRICIRDERRLPGTPGE 240

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHR 299
             P +E F + GG+  +++    +  +  +  F+G                         
Sbjct: 241 LEPHEEVFQYDGGISEFVEFLAHDERITDTWRFSGSGSFTETVPVLGEDGRSQLTDVERD 300

Query: 300 GTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--- 355
             V+ A+ W         S+ N I T +GGTH +G    L R ++K+      K  +   
Sbjct: 301 CEVDVALRWGIGYETTVRSFVNIIATPKGGTHTTGFEQGLLRVMRKHLADNARKYKVGND 360

Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415
            I  DD++     +L+V + EP+F GQTK  L +   ++ V   + D     L       
Sbjct: 361 KIEKDDVLAGLTAVLTVRLAEPQFEGQTKEILGTPAVRQIVSKVVGDALKARLESTTRAE 420

Query: 416 TKL----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
                   E V+   + R+  R  +E   RKTA+    +P KL DC       +ELFIVE
Sbjct: 421 KAQATALCEKVVSEMKTRVSARIHKETQRRKTALESSSMPTKLVDCRSTNVEHSELFIVE 480

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530
           GDSA G+A+ AR+ S QA+LP+RGKILN   A    +  N +   L+Q +G  +   +  
Sbjct: 481 GDSALGTARLARSSSYQALLPIRGKILNTQRASVTDVLANAECAALIQVIGAGSGRTFDL 540

Query: 531 EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR---ITQGT- 586
           +  RY KVI+MTDADVDGAHI +LLLT FY+ M  LIE   ++   PPL R   + +G  
Sbjct: 541 DSARYGKVIMMTDADVDGAHIRTLLLTLFYRYMRPLIEAGRVYAAVPPLHRVEVVRRGKP 600

Query: 587 -KSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644
            + VY + E+   ++L+  ++ G   K  I R+KGLGEM A QL ET MD   R L R+ 
Sbjct: 601 NEMVYTYSEKQLHELLDSLQEQGVSYKEPIQRYKGLGEMDADQLAETTMDPRHRMLRRIR 660

Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           I       +  + + + LMG++   R +FI   A  +D
Sbjct: 661 IED----AEAAERAFSLLMGSEVAPRKEFIIAGAHQLD 694


>gi|171920906|ref|ZP_02932057.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|188524343|ref|ZP_03004375.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|198273777|ref|ZP_03206311.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|209554526|ref|YP_002284909.1| DNA topoisomerase IV subunit B [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|171903123|gb|EDT49412.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|195659753|gb|EDX53133.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|198249532|gb|EDY74314.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|209542027|gb|ACI60256.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
          Length = 642

 Score =  559 bits (1439), Expect = e-157,   Method: Composition-based stats.
 Identities = 250/655 (38%), Positives = 355/655 (54%), Gaps = 33/655 (5%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ YD S+I+ILEGLE VR RPGMYIG T    LHHL  E++DN++DEV+   A  I V 
Sbjct: 2   ANKYDGSAIKILEGLEAVRKRPGMYIGSTSSAGLHHLVWEIVDNSIDEVMNANAKNISVV 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  ++++D+GRGIPV+ +P+    ST+E +LT LHAGGKFD S Y+ +GGLHGVG S
Sbjct: 62  LHEDNSISILDDGRGIPVDINPQ-TKISTVETVLTVLHAGGKFDESAYKTAGGLHGVGSS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  L   V R   I+  KFS G  +    K      K GT I F PDP IF +  
Sbjct: 121 VVNALSAWLICEVYRDQKIYQAKFSNGGHIDQPLKVIGTTKKTGTLIHFLPDPLIFKNLF 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F+   + +      +L   +K  +       E     +K EF    GL  +++   E +
Sbjct: 181 -FNPNTIKERLHESTFLIKDLKISF-------EDKINNKKYEFINDQGLIDFIKFINETK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHESGLRVALT 339
              S  IF     K   ++  VE A  + ++ N  + S+ N++ T EGG HE+  + ALT
Sbjct: 233 KTFSDVIFF----KNTINKIDVEVAFQYSDQNNEIMVSFANSVKTSEGGVHENAFKNALT 288

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395
             +  YA       ++  ++  DD+      ++S+ I E    + GQTK KL + +A   
Sbjct: 289 SVVNNYARKHDLLKEKDKNLEGDDIREGLSSVISLRIPESLISYEGQTKNKLFTPEANEA 348

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK--LRLPGKL 453
           V+  + D F  +L +N  +A  L+   I   + +L  ++ RE  +K    K    + GKL
Sbjct: 349 VKKTIEDNFSFWLEENKTQALDLVNRAIVARDAKLAAKRAREETKKVKKIKEERGMGGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      ELF+VEGDSAGGSAK  RN+  QA+LPLRGK+LNV  A    +  N++I
Sbjct: 409 TPAQSKDPTLNELFLVEGDSAGGSAKLGRNKKYQAILPLRGKVLNVLKARLVDVLKNEEI 468

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             +   LG    +++  + L+Y K+IIMTDAD DG+HI  LLLT FY+ M  LIE  +++
Sbjct: 469 ASIFTCLGTGIGAEFDLKKLKYHKIIIMTDADTDGSHIQVLLLTLFYRFMRPLIENGNIY 528

Query: 574 LISPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +  PPL+++T     K  YA D+    ++ +E K       EI R+KGLGEM A QL ET
Sbjct: 529 IALPPLYKLTNKNTKKFFYAWDDVELDQLKKEQKN-----YEIQRYKGLGEMNADQLFET 583

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF--IDDV 684
            MD +KR LLRV IN  L      +  IN LMG     R ++I     F  ID++
Sbjct: 584 TMDPSKRLLLRVNINDIL----QAERQINTLMGNDVSIRRQWIDNNIDFSVIDEL 634


>gi|327542614|gb|EGF29087.1| DNA gyrase subunit B [Rhodopirellula baltica WH47]
          Length = 637

 Score =  559 bits (1439), Expect = e-157,   Method: Composition-based stats.
 Identities = 263/649 (40%), Positives = 370/649 (57%), Gaps = 19/649 (2%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A   Y+A +I  LEGLEPVR RPGMYIGG     LHHL  E++DN++DE + G+A+ I V
Sbjct: 4   APKEYNAKNITALEGLEPVRKRPGMYIGGVGSAGLHHLIWEIVDNSVDEAMNGHASEITV 63

Query: 100 SLDGNG-FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           +L  +G  ++V DNGRGIPV+ HPK   KS LE++LT LHAGGKF+   Y+ SGGLHGVG
Sbjct: 64  TLHKDGETVSVSDNGRGIPVDKHPK-TKKSALEMVLTVLHAGGKFEGDNYKTSGGLHGVG 122

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS EL   V R    +   FSRG   S L+K        GT ITF PDP IF  
Sbjct: 123 ASVVNALSKELVAIVKRDGVQYRMAFSRGQATSKLQKLRGTVRGTGTSITFTPDPTIFPR 182

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   + +  ++ ++L   VK  +  +           ++ F    G+  YL   ++
Sbjct: 183 TT-FNGDTIKQRLETASFLHRGVKVTYIDE-------VAKTRDTFLHENGIVDYLGKVIK 234

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
            R   +              R  V         +  + SY N I T  GGTHE+G R  +
Sbjct: 235 EREARTIHEAPFTYRVDDEDRVEVTLQWTE-STDEHVRSYVNGIPTGSGGTHENGFRGGV 293

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
            + ++ + +      R + I  +D+    + I+S+F+ EP+F GQTK +L + +A   VE
Sbjct: 294 VKAVRNHVDTHSLTPRGVKITHEDIREGLIAIVSIFVAEPQFQGQTKDRLNNPEAHGLVE 353

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK-LRLPGKLADC 456
           + +R   + +L  NP  A  ++  ++  +  R   R   E   +    K   LPGKL+DC
Sbjct: 354 SGVRSAMEQWLNNNPSVADAVIARIVAAARARAASRAASEAVSRKGGSKRTLLPGKLSDC 413

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
                  +ELFIVEGDSAGGSAKQ R+R+ QA+LPLRGK+LN  SA  +KI +N++I D+
Sbjct: 414 VSGGKGKSELFIVEGDSAGGSAKQGRDRNCQAILPLRGKVLNTESATLKKILDNKEIQDM 473

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + +LGC         +LRY+++I++ DAD DG HI +LLLTFFY+ M  LI    LF+  
Sbjct: 474 IASLGCGIGPSLNLANLRYDRIILLADADSDGHHITTLLLTFFYRHMPALIADGRLFIAV 533

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G ++ +A DEE +++IL E   +G+   EI+RFKGLGEM+   L  T +D  
Sbjct: 534 PPLYRIDIGKETFWAADEEDRERILAEH--NGRANPEITRFKGLGEMMPKVLWNTTLDPT 591

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           KRTLL+VEI+  L    +T  +I+ LMG  A  RF+FI ERA    ++ 
Sbjct: 592 KRTLLKVEIDDHL----ETDRTISDLMGRDASARFRFIMERAEDASEID 636


>gi|297623604|ref|YP_003705038.1| DNA topoisomerase [Truepera radiovictrix DSM 17093]
 gi|297164784|gb|ADI14495.1| DNA topoisomerase (ATP-hydrolyzing) [Truepera radiovictrix DSM
           17093]
          Length = 642

 Score =  559 bits (1439), Expect = e-157,   Method: Composition-based stats.
 Identities = 245/656 (37%), Positives = 353/656 (53%), Gaps = 31/656 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYI-GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            Y A SI++L+GLE VR RP MY+ GGT     H L +E+IDNA+DE +AG+A+ +EV L
Sbjct: 4   TYTADSIKVLKGLEGVRKRPAMYVQGGTGVDGYHQLLTEIIDNAIDEALAGHADTVEVVL 63

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G  TV DNGRGIPV    K   +  +E+I T LHAGGKFD+  Y++SGGLHGVG SV
Sbjct: 64  NPDGSATVADNGRGIPVGMM-KREGRHAIEVIFTELHAGGKFDSDAYKVSGGLHGVGSSV 122

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKA 220
           VNALS  L   V     +   +F RG    P+    KV+    G+++TF PD  IF +  
Sbjct: 123 VNALSVFLEAEVKSGGKLHRIRFDRGEVTEPVHVIGKVKPGDTGSKVTFLPDHDIFKEVK 182

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD AR+ +  +  A+L+  VK      +        P++E F   GG+  +  T  E  
Sbjct: 183 AFDYARIRRRLRELAFLTAGVKITLEDRR-----GAEPKREVFQEKGGVAAFALTLAEG- 236

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + +  +    +          VE            I +Y N I   +GGTH +G + A T
Sbjct: 237 NYLYDKPVLIRGHADDI---EVEVGFIHTGAYVQTILTYANMITNRDGGTHLTGFKTAYT 293

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  YA+      K   +   DD +     ++SV + +P+F  Q K KL++ +AQ  V+
Sbjct: 294 RVLNNYAKAKNLIKKGDPAPTGDDFLEGISCVVSVKLGDPQFESQAKVKLLNPEAQSAVQ 353

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
           + + +    +L +NP  A  ++E  +  ++ R   RK R+ V R   I    LPGKLADC
Sbjct: 354 SVVYERLTEFLEENPKVAKAIIEKAVHAAKAREAARKARDLVRRANPIDNDELPGKLADC 413

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
                  +EL+IVEG+SAGGSAK  R R  QA+LPLRGK+LNV  A   K+  N +I  +
Sbjct: 414 QSEDPSVSELYIVEGNSAGGSAKGGRERRFQAILPLRGKVLNVEKAQLSKVLKNAEIRAM 473

Query: 517 VQALGCRT-----RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           + A+G         + +  E +RY ++IIM DADVDG+HI +LLLTFFY  M  LI+  +
Sbjct: 474 IAAIGAGLEGTGDDAHFDLESVRYHRIIIMADADVDGSHIRTLLLTFFYNYMRPLIDAGY 533

Query: 572 LFLISPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           L+L  PPL+ +  G      Y +D+   Q++L E   +   K E+ RFKGLGEM   +L 
Sbjct: 534 LYLAQPPLYAVRFGREKDVTYVYDDADLQRLLAE---NKGRKYELQRFKGLGEMNPEELW 590

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            T M+   R L +V +   L    D +++   LMGT+   R +FI+E A     + 
Sbjct: 591 ATTMNPETRILKKVTVEDAL----DAKETFEVLMGTEVPPRRRFIEENAHLA-QLD 641


>gi|32472532|ref|NP_865526.1| DNA gyrase subunit B [Rhodopirellula baltica SH 1]
 gi|32443768|emb|CAD73210.1| DNA gyrase subunit B [Rhodopirellula baltica SH 1]
          Length = 637

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 263/649 (40%), Positives = 370/649 (57%), Gaps = 19/649 (2%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A   Y+A +I  LEGLEPVR RPGMYIGG     LHHL  E++DN++DE + G+A+ I V
Sbjct: 4   APKEYNAKNITALEGLEPVRKRPGMYIGGVGSAGLHHLIWEIVDNSVDEAMNGHASEITV 63

Query: 100 SLDGNG-FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           +L  +G  ++V DNGRGIPV+ HPK   KS LE++LT LHAGGKF+   Y+ SGGLHGVG
Sbjct: 64  TLHKDGETVSVSDNGRGIPVDKHPK-TKKSALEMVLTVLHAGGKFEGDNYKTSGGLHGVG 122

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS EL   V R    +   FSRG   S L+K        GT ITF PDP IF  
Sbjct: 123 ASVVNALSKELVAIVKRDGVQYRMAFSRGQATSKLQKLRGTIRGTGTSITFTPDPTIFPR 182

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   + +  ++ ++L   VK  +  +           ++ F    G+  YL   ++
Sbjct: 183 TT-FNGDTIKQRLETASFLHRGVKVTYIDE-------VAKTRDTFLHENGIVDYLGKVIK 234

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
            R   +              R  V         +  + SY N I T  GGTHE+G R  +
Sbjct: 235 EREARTIHEAPFTYRVDDEDRVEVTLQWTE-STDEHVRSYVNGIPTGSGGTHENGFRGGV 293

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
            + ++ + +      R + I  +D+    + I+S+F+ EP+F GQTK +L + +A   VE
Sbjct: 294 VKAVRNHVDTHSLTPRGVKITHEDIREGLIAIVSIFVAEPQFQGQTKDRLNNPEAHGLVE 353

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK-LRLPGKLADC 456
           + +R   + +L  NP  A  ++  ++  +  R   R   E   +    K   LPGKL+DC
Sbjct: 354 SGVRSAMEQWLNNNPSVADAVIARIVAAARARAASRAASEAVSRKGGSKRTLLPGKLSDC 413

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
                  +ELFIVEGDSAGGSAKQ R+R+ QA+LPLRGK+LN  SA  +KI +N++I D+
Sbjct: 414 VSGGKGKSELFIVEGDSAGGSAKQGRDRNCQAILPLRGKVLNTESATLKKILDNKEIQDM 473

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + +LGC         +LRY+++I++ DAD DG HI +LLLTFFY+ M  LI    LF+  
Sbjct: 474 IASLGCGIGPSLNLANLRYDRIILLADADSDGHHITTLLLTFFYRHMPALIADGRLFIAV 533

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G ++ +A DEE +++IL E   +G+   EI+RFKGLGEM+   L  T +D  
Sbjct: 534 PPLYRIDIGKETFWAADEEDRERILAEH--NGRANPEITRFKGLGEMMPKVLWNTTLDPT 591

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           KRTLL+VEI+  L    +T  +I+ LMG  A  RF+FI ERA    ++ 
Sbjct: 592 KRTLLKVEIDDHL----ETDRTISDLMGRDASARFRFIMERAEDASEID 636


>gi|326402177|ref|YP_004282258.1| DNA topoisomerase IV subunit B [Acidiphilium multivorum AIU301]
 gi|325049038|dbj|BAJ79376.1| DNA topoisomerase IV subunit B [Acidiphilium multivorum AIU301]
          Length = 653

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 341/656 (51%), Positives = 452/656 (68%), Gaps = 7/656 (1%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +  F   +   +Y A  I +LEGLEPVR RPGMYIGGTD+ A+HHL +E++DNAMDE +A
Sbjct: 2   TDLFEQAAGQASYSAKDIEVLEGLEPVRRRPGMYIGGTDDAAMHHLAAELLDNAMDEAVA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+A++IE++L     LTV DNGRGIPV+ HPKF +KS LE+ILTTLH+GGKF    Y  S
Sbjct: 62  GHASIIEMTLAPGNLLTVRDNGRGIPVDPHPKFRDKSALEVILTTLHSGGKFAGKAYATS 121

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG SVVNAL++ L V VAR+ T++ Q ++RG PL+ L       N+RGT I F P
Sbjct: 122 GGLHGVGSSVVNALAERLEVEVAREKTLWKQDYARGKPLTKLVNAGATPNRRGTLIRFVP 181

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD-KEIAEKYGIPEKEEFYFPGGLK 270
           DP+IFGD   F  ARL +M +SKAYL   V+  W+CD   IA    +P + E +FPGGL 
Sbjct: 182 DPEIFGD-KKFSPARLYRMCRSKAYLFRGVRIRWACDAALIAAGADVPAQAELHFPGGLA 240

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGT 329
             L  +L     + + ++ G+ +      G +EWA AW E       +YCNTI T  GGT
Sbjct: 241 DSLAEELGAAPKLVAPVWAGQADLPDDA-GRIEWACAWLETGEATLSTYCNTIPTTLGGT 299

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           HE+G R AL +G++ + E   NKRA  I ++D   +    LS+FIR+P+F GQTK KL S
Sbjct: 300 HEAGFRAALLKGLRGFGEQRGNKRAAVITAEDATGALAAKLSLFIRDPQFQGQTKEKLTS 359

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
            +AQ+  E ALRD F+H+L  +P  A  LL +VIER+EER+RRR+Q++  RK+A R+LRL
Sbjct: 360 PEAQKLTEAALRDRFEHFLTGDPANADNLLAFVIERAEERIRRREQKDTPRKSATRRLRL 419

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKL DCS+     TE+F+VEGDSAGGSAKQARNR  QAVLPLRGKILNVASA +EK+R 
Sbjct: 420 PGKLTDCSRESREDTEIFLVEGDSAGGSAKQARNRETQAVLPLRGKILNVASASTEKLRQ 479

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           NQ++ DL++ALGC    +++ + LRY ++IIMTDADVDGAHIASLL+TFFY+E+ +LI  
Sbjct: 480 NQELKDLIEALGCGVGDRFQIDALRYGRIIIMTDADVDGAHIASLLMTFFYRELPELIRG 539

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
            H++L  PPL+R+TQG KSVYA D+  + ++++   K    K+EISRFKGLGEM  + LK
Sbjct: 540 GHVYLAQPPLYRLTQGGKSVYAMDDGERDRLVKTAFK-ANAKVEISRFKGLGEMPPAILK 598

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           ET MD  +R LLRV       +  +T + +  LMG K + RF+FIQ+ AS + ++ 
Sbjct: 599 ETTMDPKRRVLLRVLAP--PEARAETAEIVESLMGRKPELRFRFIQDHASSVQELD 652


>gi|194426352|ref|ZP_03058907.1| DNA topoisomerase IV, B subunit [Escherichia coli B171]
 gi|194415660|gb|EDX31927.1| DNA topoisomerase IV, B subunit [Escherichia coli B171]
 gi|323163082|gb|EFZ48915.1| DNA topoisomerase IV, B subunit [Escherichia coli E128010]
          Length = 630

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 245/647 (37%), Positives = 361/647 (55%), Gaps = 26/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R   +++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL  + ++KA L   V+  +  +    E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
                 + F G           V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LPTQPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A  L E  I  ++ R+R    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA  EE K+ +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ I+      + T   ++ L+  K +++R  ++QE+    +
Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627


>gi|301325620|ref|ZP_07219086.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 78-1]
 gi|300847592|gb|EFK75352.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 78-1]
          Length = 630

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 246/647 (38%), Positives = 362/647 (55%), Gaps = 26/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R   I++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVNVRRDGQIYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL  + ++KA L   V+  +  +    E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G           V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LPTLPEKPFIGNFSGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A  L E  I  ++ R+R    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFTLWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKHGHVYVAL 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA  EE K+ +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ I+      + T   ++ L+  K +++R  ++QE+    +
Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627


>gi|330814224|ref|YP_004358463.1| topoisomerase IV subunit B [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487319|gb|AEA81724.1| topoisomerase IV subunit B [Candidatus Pelagibacter sp. IMCC9063]
          Length = 649

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 315/650 (48%), Positives = 430/650 (66%), Gaps = 7/650 (1%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  +NY A  I +LEGL PVR RPGMYIGGTDE A HHL +E+IDN MDEV+AG A+ I 
Sbjct: 3   TKKNNYSAKDIEVLEGLAPVRKRPGMYIGGTDETAYHHLANEIIDNCMDEVVAGEASEIT 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGV 157
           V L+ NG LTV+DNGRGIP++ HPK  NKS LE+++TTLH+GGKF ++  Y  S GLHGV
Sbjct: 63  VILNKNGSLTVMDNGRGIPIDKHPK-KNKSALEVVMTTLHSGGKFKEDGVYTTSAGLHGV 121

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS ++ V V ++  I  Q++SRG PL+ L +K    +  GTR+TF PD +IFG
Sbjct: 122 GLSVVNALSSKMKVEVFKKKKIHFQEYSRGKPLNKLAQKGTYPSPHGTRVTFLPDDQIFG 181

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI-AEKYGIPEKEEFYFPGGLKTYLQTK 276
               F   ++ +  ++KA+L   VK  W CDK + + K  IP K+  ++P GL+ YL+++
Sbjct: 182 KDLIFLPIKIYETCRNKAFLFKGVKIHWECDKSLLSRKENIPNKDTLFYPEGLEQYLKSE 241

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHESGLR 335
           L N   +  +  + K + +   +G VE  I W +  N    S+ NT+ T  GGTHESG R
Sbjct: 242 LSNAKKVHDKFCSLKGDFQD-KKGKVELVIQWHDNKNNFTKSFANTVPTSNGGTHESGFR 300

Query: 336 VALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
             + + I+KYA+L  NK  I    +D+  +A  I+SVFI  PEF GQTK KL S    + 
Sbjct: 301 GGVAKAIRKYAKLKNNKTVIKASQEDIFSNASYIVSVFIGNPEFEGQTKNKLSSSFVLKY 360

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
            + ++   F+ +L +N   A  +L ++ E+  ER        V R+T+ RK+RLPGKLAD
Sbjct: 361 CDQSVSILFEDWLNRNSKAAKSILTFIEEKIRERNLYELNNNVERQTSFRKIRLPGKLAD 420

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C+ +   GTELFIVEGDSAGGSAKQAR+R  QA+LPLRGKILNV ++ + KI  N +I +
Sbjct: 421 CASDKTEGTELFIVEGDSAGGSAKQARDRYTQAILPLRGKILNVKNSNTAKILANNEIGN 480

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           L+QALGC+  ++Y  +DLRYEK+IIMTDADVDG HI++LLLTFF+ EM +LI+   LF+ 
Sbjct: 481 LLQALGCQRGNKYVRKDLRYEKIIIMTDADVDGDHISTLLLTFFFIEMPELIKDGRLFMA 540

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL++I+ G ++ Y  D++ K KI++ FKK+   KIEI RFKGLGEM+ +QLKET M+ 
Sbjct: 541 VPPLYKISSGAQTFYVRDDKAKDKIVKSFKKN--AKIEIGRFKGLGEMMPAQLKETTMNK 598

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             R L++V +  +    K T   IN LMG  AD R KFI E A  I ++ 
Sbjct: 599 ETRNLIKVSVPTNKIKYKVTSKLINDLMGKDADLRLKFISENAGKILNLD 648


>gi|315107489|gb|EFT79465.1| DNA gyrase, B subunit [Propionibacterium acnes HL030PA1]
          Length = 685

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 251/662 (37%), Positives = 366/662 (55%), Gaps = 19/662 (2%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
              +   +YDA  I +LEGLE VR RPGMYIG T E+ LHH   E++DN++DE +AGY +
Sbjct: 30  PPTAVDGSYDAGQITVLEGLEAVRKRPGMYIGSTGERGLHHCVYEIVDNSVDEAMAGYCD 89

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I+V L  + +  V DNGRGIPV+ HP   +  T+ ++LT LHAGGKF N  Y++SGGLH
Sbjct: 90  TIQVELLDDNWCQVTDNGRGIPVKEHP-VEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLH 148

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDP 213
           GVG SVVNAL+    V V R    + Q FS G P  PLE+ E     +  GT + F+P  
Sbjct: 149 GVGSSVVNALAAHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDYEGTTVRFQPSD 208

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTY 272
           +IF     FD   L    +  A+L+  ++   +  + + A++ G P  E+F +  GLK Y
Sbjct: 209 EIFDAIV-FDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDY 267

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++     R +I+  I + ++ +     G +E A+ W       + ++ N I T EGG HE
Sbjct: 268 VRFLTGTRDVINPTIISLESHRPEEGMG-LEIAMQWNTSYATSVHTFANAINTIEGGAHE 326

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G R ALT  + ++ E      KR   +  DD+      ++S+ + EP+F GQTKTKL +
Sbjct: 327 EGFRAALTNTVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGN 386

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA--IRKL 447
            +A+  V+ AL +    +  +NP E   +++     ++ R+  RK R++ R     +   
Sbjct: 387 AEAKSFVQKALNEKLSDWFEENPNEGKSIVQKSQAAAQARVAARKARDLARNRKGLLGST 446

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKL DCS       E+FIVEGDSAGGSA Q R+   QA+LPLRGKILNV  A  ++ 
Sbjct: 447 SLPGKLKDCSSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRA 506

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             ++ I  ++ ALG      +  + LRY K+I+M DADVDGAHI +LLLT  ++ M  +I
Sbjct: 507 LGSETIESIINALGTGVHEDFDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVI 566

Query: 568 EQKHLFLISPPLFRITQGTKSVY-AHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEM 623
           +  H++L  PPLFR+         A+ +E +  + E+   HGK   +   I R+KGLGEM
Sbjct: 567 DAGHVYLAQPPLFRLRWTNSPHELAYSDEERDLLREDGLTHGKKLPQVNPIQRYKGLGEM 626

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
            A  L +T MD +KR LL+V +              + LMG   ++R  FIQ  A  +  
Sbjct: 627 DAEDLWDTTMDPDKRLLLQVTLED----AALADQMFSILMGEDVEQRRSFIQRNAKDVRF 682

Query: 684 VG 685
           + 
Sbjct: 683 LD 684


>gi|327334567|gb|EGE76278.1| DNA gyrase, B subunit [Propionibacterium acnes HL097PA1]
          Length = 685

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 251/662 (37%), Positives = 365/662 (55%), Gaps = 19/662 (2%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
              +   +YDA  I +LEGLE VR RPGMYIG T E+ LHH   E++DN++DE +AGY +
Sbjct: 30  PPTTVDGSYDAGQITVLEGLEAVRKRPGMYIGSTGERGLHHCVYEIVDNSVDEAMAGYCD 89

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I+V L  + +  V DNGRGIPV+ HP   +  T+ ++LT LHAGGKF N  Y++SGGLH
Sbjct: 90  TIQVELLDDNWCQVTDNGRGIPVKEHP-VEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLH 148

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDP 213
           GVG SVVNAL+    V V R    + Q FS G P  PLE+ E     +  GT + F+P  
Sbjct: 149 GVGSSVVNALAAHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDHEGTTVRFQPSD 208

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTY 272
           +IF     FD   L    +  A+L+  ++   +  + + A++ G P  E+F +  GLK Y
Sbjct: 209 EIFDAIV-FDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDY 267

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++     R +I+  I + ++ +     G +E A+ W       + ++ N I T EGG HE
Sbjct: 268 VRFLTGTRDVINPTIISLESHRPEEGMG-LEIAMQWNTSYATSVHTFANAINTIEGGAHE 326

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G R ALT  + ++ E      KR   +  DD+      ++S+ + EP+F GQTKTKL +
Sbjct: 327 EGFRAALTNTVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGN 386

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA--IRKL 447
            +A+  V+ AL +    +  +NP E   ++      ++ R+  RK R++ R     +   
Sbjct: 387 AEAKSFVQKALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARSRKGLLGST 446

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKL DCS       E+FIVEGDSAGGSA Q R+   QA+LPLRGKILNV  A  ++ 
Sbjct: 447 SLPGKLKDCSSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRA 506

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             ++ I  ++ ALG      +  + LRY K+I+M DADVDGAHI +LLLT  ++ M  +I
Sbjct: 507 LGSETIESIINALGTGVHEDFDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVI 566

Query: 568 EQKHLFLISPPLFRITQGTKSVY-AHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEM 623
           +  H++L  PPLFR+         A+ +E +  + E+   HGK   +   I R+KGLGEM
Sbjct: 567 DAGHVYLAQPPLFRLRWTNSPHELAYSDEERDLLREDGLTHGKKLPQVNPIQRYKGLGEM 626

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
            A  L +T MD +KR LL+V +              + LMG   ++R  FIQ  A  +  
Sbjct: 627 DAEDLWDTTMDPDKRLLLQVTLED----AALADQMFSILMGEDVEQRRSFIQRNAKDVRF 682

Query: 684 VG 685
           + 
Sbjct: 683 LD 684


>gi|315651450|ref|ZP_07904473.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Eubacterium
           saburreum DSM 3986]
 gi|315486270|gb|EFU76629.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Eubacterium
           saburreum DSM 3986]
          Length = 637

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 250/653 (38%), Positives = 349/653 (53%), Gaps = 34/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y+A SI +LEGLE VR+RPGMYIGG   K L+HL  E++DN++DE +AGY   I V+L
Sbjct: 2   QDYNAGSITVLEGLEAVRVRPGMYIGGVGVKGLNHLIYEIMDNSIDEHLAGYCKNIWVTL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G  TV D+GRGIPVE H K    S   ++L+TLHAGGKFDN +Y+ SGGLHGVG SV
Sbjct: 62  NADGSCTVRDDGRGIPVEMHQK--GVSAERVVLSTLHAGGKFDNESYKTSGGLHGVGSSV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK-----KEKVRNKRGTRITFRPDPKIF 216
           VNALS  L + + R   I   ++ RG+P+  L+K       K +   GT ITF PD  IF
Sbjct: 120 VNALSSFLDIKIYRGRYIHHDRYERGVPVIELKKGLLPTVGKTKE-SGTEITFLPDDTIF 178

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                F A  L       AYL+  +   +   +E        E++ ++ P G+  Y++  
Sbjct: 179 EV-TKFRADWLKSRMHESAYLNPGLILHFINKRE-----NEYEEKIYHEPEGIVAYVKEL 232

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335
            + + ++ + I      K       VE AI + +   E    +CN I T EGGTH  G +
Sbjct: 233 NKGKEVMHAPISY----KGVCDNIEVEAAIQFVDAFEENILGFCNNIFTQEGGTHIVGFK 288

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
              T  I  YA        +  +    D       I+S+   +P F GQTKTKL S DA 
Sbjct: 289 TKFTGLINTYARELGILKDKDSNFTGADTRNGMTAIVSIKHPDPMFEGQTKTKLASADAT 348

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
           R V     D    Y  +N      ++    + ++ R    + +      +       GKL
Sbjct: 349 RAVLTVTGDELTRYFDRNVDVVKSIISCAEKSAKIRKAEERAKTNMLTKSKFSFESNGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           A+C        E+FIVEGDSAGGSAK ARNR+ QA+LP+RGKILNV  A  +K+  N +I
Sbjct: 409 ANCESKDPSKCEIFIVEGDSAGGSAKTARNRNFQAILPIRGKILNVEKASIDKVLANAEI 468

Query: 514 MDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
             ++   GC       + +    LRY+K+I+MTDADVDG+HI +LLLTF Y+ M +LI  
Sbjct: 469 KTMINTFGCGFSEGYGNDFDISKLRYDKIILMTDADVDGSHIDTLLLTFLYRFMPELIYD 528

Query: 570 KHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
            H+++  PPLF++  +  + VY +DE    K LE+++K  K    + R+KGLGEM A QL
Sbjct: 529 GHVYIAMPPLFKVVPKRGEGVYLYDE----KALEDYRKKHKDNFTLQRYKGLGEMDAEQL 584

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
            ET +D  +R L +VEI       +   +    LMG+    R  FI E A   
Sbjct: 585 WETTLDPERRVLKKVEIED----ARLASEITELLMGSDVTPRRNFIHEHAREA 633


>gi|313771057|gb|EFS37023.1| DNA gyrase, B subunit [Propionibacterium acnes HL074PA1]
 gi|313792559|gb|EFS40645.1| DNA gyrase, B subunit [Propionibacterium acnes HL110PA1]
 gi|313803561|gb|EFS44743.1| DNA gyrase, B subunit [Propionibacterium acnes HL110PA2]
 gi|313811778|gb|EFS49492.1| DNA gyrase, B subunit [Propionibacterium acnes HL083PA1]
 gi|313814213|gb|EFS51927.1| DNA gyrase, B subunit [Propionibacterium acnes HL025PA1]
 gi|313832312|gb|EFS70026.1| DNA gyrase, B subunit [Propionibacterium acnes HL007PA1]
 gi|313832772|gb|EFS70486.1| DNA gyrase, B subunit [Propionibacterium acnes HL056PA1]
 gi|313839631|gb|EFS77345.1| DNA gyrase, B subunit [Propionibacterium acnes HL086PA1]
 gi|314963864|gb|EFT07964.1| DNA gyrase, B subunit [Propionibacterium acnes HL082PA1]
 gi|314975206|gb|EFT19301.1| DNA gyrase, B subunit [Propionibacterium acnes HL053PA1]
 gi|314977620|gb|EFT21715.1| DNA gyrase, B subunit [Propionibacterium acnes HL045PA1]
 gi|314985195|gb|EFT29287.1| DNA gyrase, B subunit [Propionibacterium acnes HL005PA1]
 gi|315079002|gb|EFT51014.1| DNA gyrase, B subunit [Propionibacterium acnes HL053PA2]
 gi|315081489|gb|EFT53465.1| DNA gyrase, B subunit [Propionibacterium acnes HL078PA1]
 gi|315097154|gb|EFT69130.1| DNA gyrase, B subunit [Propionibacterium acnes HL038PA1]
 gi|327332508|gb|EGE74243.1| DNA gyrase, B subunit [Propionibacterium acnes HL096PA2]
 gi|327446714|gb|EGE93368.1| DNA gyrase, B subunit [Propionibacterium acnes HL043PA2]
 gi|327448844|gb|EGE95498.1| DNA gyrase, B subunit [Propionibacterium acnes HL043PA1]
 gi|327457406|gb|EGF04061.1| DNA gyrase, B subunit [Propionibacterium acnes HL092PA1]
 gi|328759820|gb|EGF73411.1| DNA gyrase, B subunit [Propionibacterium acnes HL099PA1]
          Length = 685

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 251/662 (37%), Positives = 365/662 (55%), Gaps = 19/662 (2%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
              +   +YDA  I +LEGLE VR RPGMYIG T E+ LHH   E++DN++DE +AGY +
Sbjct: 30  PPTAVDGSYDAGQITVLEGLEAVRKRPGMYIGSTGERGLHHCVYEIVDNSVDEAMAGYCD 89

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I+V L  + +  V DNGRGIPV+ HP   +  T+ ++LT LHAGGKF N  Y++SGGLH
Sbjct: 90  TIQVELLDDNWCQVTDNGRGIPVKEHP-VEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLH 148

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDP 213
           GVG SVVNAL+    V V R    + Q FS G P  PLE+ E     +  GT + F+P  
Sbjct: 149 GVGSSVVNALAAHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDHEGTTVRFQPSD 208

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTY 272
           +IF     FD   L    +  A+L+  ++   +  + + A++ G P  E+F +  GLK Y
Sbjct: 209 EIFDAIV-FDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDY 267

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++     R +I+  I + ++ +     G +E A+ W       + ++ N I T EGG HE
Sbjct: 268 VRFLTGTRDVINPTIISLESHRPEEGMG-LEIAMQWNTSYATSVHTFANAINTIEGGAHE 326

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G R ALT  + ++ E      KR   +  DD+      ++S+ + EP+F GQTKTKL +
Sbjct: 327 EGFRAALTNTVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGN 386

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA--IRKL 447
            +A+  V+ AL +    +  +NP E   ++      ++ R+  RK R++ R     +   
Sbjct: 387 AEAKSFVQKALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARNRKGLLGST 446

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKL DCS       E+FIVEGDSAGGSA Q R+   QA+LPLRGKILNV  A  ++ 
Sbjct: 447 SLPGKLKDCSSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRA 506

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             ++ I  ++ ALG      +  + LRY K+I+M DADVDGAHI +LLLT  ++ M  +I
Sbjct: 507 LGSETIESIINALGTGVHEDFDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVI 566

Query: 568 EQKHLFLISPPLFRITQGTKSVY-AHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEM 623
           +  H++L  PPLFR+         A+ +E +  + E+   HGK   +   I R+KGLGEM
Sbjct: 567 DAGHVYLAQPPLFRLRWTNSPHELAYSDEERDLLREDGLTHGKKLPQVNPIQRYKGLGEM 626

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
            A  L +T MD +KR LL+V +              + LMG   ++R  FIQ  A  +  
Sbjct: 627 DAEDLWDTTMDPDKRLLLQVTLED----AALADQMFSILMGEDVEQRRSFIQRNAKDVRF 682

Query: 684 VG 685
           + 
Sbjct: 683 LD 684


>gi|331001824|ref|ZP_08325346.1| hypothetical protein HMPREF0491_00208 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412798|gb|EGG92181.1| hypothetical protein HMPREF0491_00208 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 637

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 252/653 (38%), Positives = 351/653 (53%), Gaps = 34/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y+A SI +LEGLE VR+RPGMYIGG   K L+HL  E++DN++DE +AGY   I V+L
Sbjct: 2   QDYNAGSITVLEGLEAVRVRPGMYIGGVGVKGLNHLIYEIMDNSIDEHLAGYCKNIWVTL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G  TV D+GRGIPVE H K    S   ++L+TLHAGGKFDN++Y+ SGGLHGVG SV
Sbjct: 62  NADGSCTVKDDGRGIPVEMHQK--GISAERVVLSTLHAGGKFDNASYKTSGGLHGVGSSV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK-----KEKVRNKRGTRITFRPDPKIF 216
           VNALSD L + ++R   I   ++ +GIP+  L+K       K +   GT ITF PD  IF
Sbjct: 120 VNALSDFLDIKISRDGYIHHDRYEKGIPVIELKKGLLPTIGKTKE-SGTEITFLPDNTIF 178

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                F A  L       AYL+  +   +   +E   +        FY P G+  Y++  
Sbjct: 179 EV-TKFKAEWLKSRMHESAYLNPGLMLHFINLRENEYEERT-----FYEPDGIVAYVKEL 232

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335
            + + ++ + I   K    G     VE AI + +   E    +CN I T EGGTH +G +
Sbjct: 233 NKGKEVMHAPISY-KGICDGI---DVEIAIQFVDAFEENILGFCNNIFTQEGGTHIAGFK 288

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
              T  I  YA        +  +    D       I+S+    P F GQTKTKL S DA 
Sbjct: 289 TKFTGLINTYARDLGVLKDKDSNFTGADTRNGMTAIISIKHPNPMFEGQTKTKLASADAT 348

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
           R V     D    +  +N      ++    + ++ R    + +      +       GKL
Sbjct: 349 RAVLTVTGDELTRFFDRNVDVIKSIISCAEKSAKIRKAEERAKTNMLTKSKFSFESNGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           A+C        E+FIVEGDSAGGSAK ARNR+ QA+LP+RGKILNV  A  +K+  N +I
Sbjct: 409 ANCESKDPSKCEIFIVEGDSAGGSAKTARNRNFQAILPIRGKILNVEKASIDKVLANAEI 468

Query: 514 MDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
             ++   GC       + +    LRY+K+I+MTDADVDG+HI +LLLTF Y+ M +LI  
Sbjct: 469 KTMINTFGCGFSEGYGNDFDISKLRYDKIILMTDADVDGSHIDTLLLTFLYRFMPELIYD 528

Query: 570 KHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
            H+++  PPLF++  +  + +Y +DE    K LE++KK  K    + R+KGLGEM A QL
Sbjct: 529 GHVYIAMPPLFKVVPKRGEGIYLYDE----KALEDYKKKHKDNFTLQRYKGLGEMDAEQL 584

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
            ET +D  +R L +VEI       +   +    LMG+    R  FI E A   
Sbjct: 585 WETTLDPERRVLKKVEIED----ARLASEVTELLMGSDVAPRRNFIHEHAREA 633


>gi|74313568|ref|YP_311987.1| DNA topoisomerase IV subunit B [Shigella sonnei Ss046]
 gi|73857045|gb|AAZ89752.1| DNA topoisomerase IV subunit B [Shigella sonnei Ss046]
          Length = 630

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 245/647 (37%), Positives = 362/647 (55%), Gaps = 26/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R   +++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL  + ++KA L   V+  +  +    E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G           V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A  L E  I  ++ R+R    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 465 SVAIGIDPNSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA  EE K+ +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ I+      + T   ++ L+  K +++R  ++QE+    +
Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627


>gi|289424273|ref|ZP_06426056.1| DNA gyrase, B subunit [Propionibacterium acnes SK187]
 gi|295129538|ref|YP_003580201.1| DNA gyrase, B subunit [Propionibacterium acnes SK137]
 gi|289154970|gb|EFD03652.1| DNA gyrase, B subunit [Propionibacterium acnes SK187]
 gi|291375904|gb|ADD99758.1| DNA gyrase, B subunit [Propionibacterium acnes SK137]
          Length = 690

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 251/662 (37%), Positives = 365/662 (55%), Gaps = 19/662 (2%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
              +   +YDA  I +LEGLE VR RPGMYIG T E+ LHH   E++DN++DE +AGY +
Sbjct: 35  PPTAVDGSYDAGQITVLEGLEAVRKRPGMYIGSTGERGLHHCVYEIVDNSVDEAMAGYCD 94

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I+V L  + +  V DNGRGIPV+ HP   +  T+ ++LT LHAGGKF N  Y++SGGLH
Sbjct: 95  TIQVELLDDNWCQVTDNGRGIPVKEHP-VEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLH 153

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDP 213
           GVG SVVNAL+    V V R    + Q FS G P  PLE+ E     +  GT + F+P  
Sbjct: 154 GVGSSVVNALAAHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDHEGTTVRFQPSD 213

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTY 272
           +IF     FD   L    +  A+L+  ++   +  + + A++ G P  E+F +  GLK Y
Sbjct: 214 EIFDAIV-FDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDY 272

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++     R +I+  I + ++ +     G +E A+ W       + ++ N I T EGG HE
Sbjct: 273 VRFLTGTRDVINPTIISLESHRPEEGMG-LEIAMQWNTSYATSVHTFANAINTIEGGAHE 331

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G R ALT  + ++ E      KR   +  DD+      ++S+ + EP+F GQTKTKL +
Sbjct: 332 EGFRAALTNTVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGN 391

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA--IRKL 447
            +A+  V+ AL +    +  +NP E   ++      ++ R+  RK R++ R     +   
Sbjct: 392 AEAKSFVQKALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARNRKGLLGST 451

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKL DCS       E+FIVEGDSAGGSA Q R+   QA+LPLRGKILNV  A  ++ 
Sbjct: 452 SLPGKLKDCSSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRA 511

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             ++ I  ++ ALG      +  + LRY K+I+M DADVDGAHI +LLLT  ++ M  +I
Sbjct: 512 LGSETIESIINALGTGVHEDFDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVI 571

Query: 568 EQKHLFLISPPLFRITQGTKSVY-AHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEM 623
           +  H++L  PPLFR+         A+ +E +  + E+   HGK   +   I R+KGLGEM
Sbjct: 572 DAGHVYLAQPPLFRLRWTNSPHELAYSDEERDLLREDGLTHGKKLPQVNPIQRYKGLGEM 631

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
            A  L +T MD +KR LL+V +              + LMG   ++R  FIQ  A  +  
Sbjct: 632 DAEDLWDTTMDPDKRLLLQVTLED----AALADQMFSILMGEDVEQRRSFIQRNAKDVRF 687

Query: 684 VG 685
           + 
Sbjct: 688 LD 689


>gi|148259050|ref|YP_001233177.1| DNA topoisomerase IV subunit B [Acidiphilium cryptum JF-5]
 gi|146400731|gb|ABQ29258.1| DNA topoisomerase IV subunit B [Acidiphilium cryptum JF-5]
          Length = 653

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 341/656 (51%), Positives = 452/656 (68%), Gaps = 7/656 (1%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +  F   +   +Y A  I +LEGLEPVR RPGMYIGGTD+ A+HHL +E++DNAMDE +A
Sbjct: 2   TDLFEQAAGQASYSAKDIEVLEGLEPVRRRPGMYIGGTDDAAMHHLAAELLDNAMDEAVA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+A++IE++L     LTV DNGRGIPV+ HPKF +KS LE+ILTTLH+GGKF    Y  S
Sbjct: 62  GHASIIEMTLAPGNLLTVRDNGRGIPVDPHPKFRDKSALEVILTTLHSGGKFAGKAYATS 121

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG SVVNAL++ L V VAR+ T++ Q ++RG PL+ L       N+RGT I F P
Sbjct: 122 GGLHGVGSSVVNALAERLEVEVAREKTLWKQDYARGKPLTKLVNAGATPNRRGTLIRFVP 181

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD-KEIAEKYGIPEKEEFYFPGGLK 270
           DP+IFGD   F  ARL +M +SKAYL   V+  W+CD   IA    +P + E +FPGGL 
Sbjct: 182 DPEIFGD-KKFSPARLYRMCRSKAYLFRGVRIRWTCDAALIAAGADVPAQAELHFPGGLA 240

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGT 329
             L  +L     + + ++ G+ +      G +EWA AW E       +YCNTI T  GGT
Sbjct: 241 DSLAEELGAAPKLVAPVWAGQADLPDDA-GRIEWACAWLEAGEATLSTYCNTIPTTLGGT 299

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           HE+G R AL +G++ + E   NKRA  I ++D   +    LS+FIR+P+F GQTK KL S
Sbjct: 300 HEAGFRAALLKGLRGFGEQRSNKRAAVITAEDATGALAAKLSLFIRDPQFQGQTKEKLTS 359

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
            +AQ+  E ALRD F+H+L  +P  A  LL +VIER+EER+RRR+Q++  RK+A R+LRL
Sbjct: 360 PEAQKLTEAALRDRFEHFLTGDPANADNLLAFVIERAEERIRRREQKDTPRKSATRRLRL 419

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKL DCS+     TE+F+VEGDSAGGSAKQARNR  QAVLPLRGKILNVASA +EK+R 
Sbjct: 420 PGKLTDCSRESREDTEIFLVEGDSAGGSAKQARNRETQAVLPLRGKILNVASASTEKLRQ 479

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           NQ++ DL++ALGC    +++ + LRY ++IIMTDADVDGAHIASLL+TFFY+E+ +LI  
Sbjct: 480 NQELKDLIEALGCGVGDRFQIDALRYGRIIIMTDADVDGAHIASLLMTFFYRELPELIRG 539

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
            H++L  PPL+R+TQG KSVYA D+  + ++++   K    K+EISRFKGLGEM  + LK
Sbjct: 540 GHVYLAQPPLYRLTQGGKSVYAMDDGERDRLVKTAFK-ANAKVEISRFKGLGEMPPAILK 598

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           ET MD  +R LLRV       +  +T + +  LMG K + RF+FIQ+ AS + ++ 
Sbjct: 599 ETTMDPKRRVLLRVLAP--PEARAETAEIVESLMGRKPELRFRFIQDHASSVQELD 652


>gi|313806865|gb|EFS45363.1| DNA gyrase, B subunit [Propionibacterium acnes HL087PA2]
 gi|313817652|gb|EFS55366.1| DNA gyrase, B subunit [Propionibacterium acnes HL046PA2]
 gi|313821523|gb|EFS59237.1| DNA gyrase, B subunit [Propionibacterium acnes HL036PA1]
 gi|313824533|gb|EFS62247.1| DNA gyrase, B subunit [Propionibacterium acnes HL036PA2]
 gi|313826201|gb|EFS63915.1| DNA gyrase, B subunit [Propionibacterium acnes HL063PA1]
 gi|314926324|gb|EFS90155.1| DNA gyrase, B subunit [Propionibacterium acnes HL036PA3]
 gi|314961671|gb|EFT05772.1| DNA gyrase, B subunit [Propionibacterium acnes HL002PA2]
 gi|314980248|gb|EFT24342.1| DNA gyrase, B subunit [Propionibacterium acnes HL072PA2]
 gi|314987104|gb|EFT31196.1| DNA gyrase, B subunit [Propionibacterium acnes HL005PA2]
 gi|314990695|gb|EFT34786.1| DNA gyrase, B subunit [Propionibacterium acnes HL005PA3]
 gi|315083089|gb|EFT55065.1| DNA gyrase, B subunit [Propionibacterium acnes HL027PA2]
 gi|315086622|gb|EFT58598.1| DNA gyrase, B subunit [Propionibacterium acnes HL002PA3]
 gi|315088023|gb|EFT59999.1| DNA gyrase, B subunit [Propionibacterium acnes HL072PA1]
 gi|327333681|gb|EGE75398.1| DNA gyrase, B subunit [Propionibacterium acnes HL096PA3]
 gi|327444460|gb|EGE91114.1| DNA gyrase, B subunit [Propionibacterium acnes HL013PA2]
 gi|328757967|gb|EGF71583.1| DNA gyrase, B subunit [Propionibacterium acnes HL020PA1]
          Length = 685

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 251/662 (37%), Positives = 365/662 (55%), Gaps = 19/662 (2%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
              +   +YDA  I +LEGLE VR RPGMYIG T E+ LHH   E++DN++DE +AGY +
Sbjct: 30  PPTAVDGSYDAGQITVLEGLEAVRKRPGMYIGSTGERGLHHCVYEIVDNSVDEAMAGYCD 89

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I+V L  + +  V DNGRGIPV+ HP   +  T+ ++LT LHAGGKF N  Y++SGGLH
Sbjct: 90  TIQVELLDDNWCQVTDNGRGIPVKEHP-VEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLH 148

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDP 213
           GVG SVVNAL+    V V R    + Q FS G P  PLE+ E     +  GT + F+P  
Sbjct: 149 GVGSSVVNALAVHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDHEGTTVRFQPSD 208

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTY 272
           +IF     FD   L    +  A+L+  ++   +  + + A++ G P  E+F +  GLK Y
Sbjct: 209 EIFDAIV-FDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDY 267

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++     R +I+  I + ++ +     G +E A+ W       + ++ N I T EGG HE
Sbjct: 268 VRFLTGTRDVINPTIISLESHRPEEGMG-LEIAMQWNTSYATSVHTFANAINTIEGGAHE 326

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G R ALT  + ++ E      KR   +  DD+      ++S+ + EP+F GQTKTKL +
Sbjct: 327 EGFRAALTNTVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGN 386

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA--IRKL 447
            +A+  V+ AL +    +  +NP E   ++      ++ R+  RK R++ R     +   
Sbjct: 387 AEAKSFVQKALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARNRKGLLGST 446

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKL DCS       E+FIVEGDSAGGSA Q R+   QA+LPLRGKILNV  A  ++ 
Sbjct: 447 SLPGKLKDCSSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRA 506

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             ++ I  ++ ALG      +  + LRY K+I+M DADVDGAHI +LLLT  ++ M  +I
Sbjct: 507 LGSETIESIINALGTGVHEDFDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVI 566

Query: 568 EQKHLFLISPPLFRITQGTKSVY-AHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEM 623
           +  H++L  PPLFR+         A+ +E +  + E+   HGK   +   I R+KGLGEM
Sbjct: 567 DAGHVYLAQPPLFRLRWTNSPHELAYSDEERDLLREDGLTHGKKLPQVNPIQRYKGLGEM 626

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
            A  L +T MD +KR LL+V +              + LMG   ++R  FIQ  A  +  
Sbjct: 627 DAEDLWDTTMDPDKRLLLQVTLED----AALADQMFSILMGEDVEQRRSFIQRNAKDVRF 682

Query: 684 VG 685
           + 
Sbjct: 683 LD 684


>gi|289427505|ref|ZP_06429218.1| DNA gyrase, B subunit [Propionibacterium acnes J165]
 gi|289159435|gb|EFD07626.1| DNA gyrase, B subunit [Propionibacterium acnes J165]
          Length = 690

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 251/662 (37%), Positives = 365/662 (55%), Gaps = 19/662 (2%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
              +   +YDA  I +LEGLE VR RPGMYIG T E+ LHH   E++DN++DE +AGY +
Sbjct: 35  PPTAVDGSYDAGQITVLEGLEAVRKRPGMYIGSTGERGLHHCVYEIVDNSVDEAMAGYCD 94

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I+V L  + +  V DNGRGIPV+ HP   +  T+ ++LT LHAGGKF N  Y++SGGLH
Sbjct: 95  TIQVELLDDNWCQVTDNGRGIPVKEHP-VEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLH 153

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDP 213
           GVG SVVNAL+    V V R    + Q FS G P  PLE+ E     +  GT + F+P  
Sbjct: 154 GVGSSVVNALAVHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDHEGTTVRFQPSD 213

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTY 272
           +IF     FD   L    +  A+L+  ++   +  + + A++ G P  E+F +  GLK Y
Sbjct: 214 EIFDAIV-FDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDY 272

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++     R +I+  I + ++ +     G +E A+ W       + ++ N I T EGG HE
Sbjct: 273 VRFLTGTRDVINPTIISLESHRPEEGMG-LEIAMQWNTSYATSVHTFANAINTIEGGAHE 331

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G R ALT  + ++ E      KR   +  DD+      ++S+ + EP+F GQTKTKL +
Sbjct: 332 EGFRAALTNTVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGN 391

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA--IRKL 447
            +A+  V+ AL +    +  +NP E   ++      ++ R+  RK R++ R     +   
Sbjct: 392 AEAKSFVQKALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARNRKGLLGST 451

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKL DCS       E+FIVEGDSAGGSA Q R+   QA+LPLRGKILNV  A  ++ 
Sbjct: 452 SLPGKLKDCSSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRA 511

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             ++ I  ++ ALG      +  + LRY K+I+M DADVDGAHI +LLLT  ++ M  +I
Sbjct: 512 LGSETIESIINALGTGVHEDFDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVI 571

Query: 568 EQKHLFLISPPLFRITQGTKSVY-AHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEM 623
           +  H++L  PPLFR+         A+ +E +  + E+   HGK   +   I R+KGLGEM
Sbjct: 572 DAGHVYLAQPPLFRLRWTNSPHELAYSDEERDLLREDGLTHGKKLPQVNPIQRYKGLGEM 631

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
            A  L +T MD +KR LL+V +              + LMG   ++R  FIQ  A  +  
Sbjct: 632 DAEDLWDTTMDPDKRLLLQVTLED----AALADQMFSILMGEDVEQRRSFIQRNAKDVRF 687

Query: 684 VG 685
           + 
Sbjct: 688 LD 689


>gi|16130926|ref|NP_417502.1| DNA topoisomerase IV, subunit B [Escherichia coli str. K-12 substr.
           MG1655]
 gi|82545287|ref|YP_409234.1| DNA topoisomerase IV subunit B [Shigella boydii Sb227]
 gi|89109800|ref|AP_003580.1| DNA topoisomerase IV, subunit B [Escherichia coli str. K-12 substr.
           W3110]
 gi|157159021|ref|YP_001464491.1| DNA topoisomerase IV subunit B [Escherichia coli E24377A]
 gi|157162506|ref|YP_001459824.1| DNA topoisomerase IV subunit B [Escherichia coli HS]
 gi|170018716|ref|YP_001723670.1| DNA topoisomerase IV subunit B [Escherichia coli ATCC 8739]
 gi|170082573|ref|YP_001731893.1| DNA topoisomerase IV, subunit B [Escherichia coli str. K-12 substr.
           DH10B]
 gi|188493014|ref|ZP_03000284.1| DNA topoisomerase IV, B subunit [Escherichia coli 53638]
 gi|191167538|ref|ZP_03029350.1| DNA topoisomerase IV, B subunit [Escherichia coli B7A]
 gi|193062072|ref|ZP_03043168.1| DNA topoisomerase IV, B subunit [Escherichia coli E22]
 gi|193067388|ref|ZP_03048356.1| DNA topoisomerase IV, B subunit [Escherichia coli E110019]
 gi|194436719|ref|ZP_03068819.1| DNA topoisomerase IV, B subunit [Escherichia coli 101-1]
 gi|209920502|ref|YP_002294586.1| DNA topoisomerase IV subunit B [Escherichia coli SE11]
 gi|218555600|ref|YP_002388513.1| DNA topoisomerase IV subunit B [Escherichia coli IAI1]
 gi|218696736|ref|YP_002404403.1| DNA topoisomerase IV subunit B [Escherichia coli 55989]
 gi|218701804|ref|YP_002409433.1| DNA topoisomerase IV subunit B [Escherichia coli IAI39]
 gi|218706657|ref|YP_002414176.1| DNA topoisomerase IV subunit B [Escherichia coli UMN026]
 gi|238902143|ref|YP_002927939.1| DNA topoisomerase IV, subunit B [Escherichia coli BW2952]
 gi|253772132|ref|YP_003034963.1| DNA topoisomerase IV subunit B [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162979|ref|YP_003046087.1| DNA topoisomerase IV subunit B [Escherichia coli B str. REL606]
 gi|256019052|ref|ZP_05432917.1| DNA topoisomerase IV subunit B [Shigella sp. D9]
 gi|256024388|ref|ZP_05438253.1| DNA topoisomerase IV subunit B [Escherichia sp. 4_1_40B]
 gi|260845784|ref|YP_003223562.1| DNA topoisomerase IV subunit B [Escherichia coli O103:H2 str.
           12009]
 gi|260857163|ref|YP_003231054.1| DNA topoisomerase IV subunit B [Escherichia coli O26:H11 str.
           11368]
 gi|260869784|ref|YP_003236186.1| DNA topoisomerase IV subunit B [Escherichia coli O111:H- str.
           11128]
 gi|293406645|ref|ZP_06650571.1| DNA topoisomerase IV subunit B [Escherichia coli FVEC1412]
 gi|293416475|ref|ZP_06659114.1| DNA topoisomerase IV [Escherichia coli B185]
 gi|293449370|ref|ZP_06663791.1| DNA topoisomerase IV [Escherichia coli B088]
 gi|298382385|ref|ZP_06991982.1| DNA topoisomerase 4 subunit B [Escherichia coli FVEC1302]
 gi|300821623|ref|ZP_07101769.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 119-7]
 gi|300901410|ref|ZP_07119496.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 198-1]
 gi|300905833|ref|ZP_07123566.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 84-1]
 gi|300916859|ref|ZP_07133562.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 115-1]
 gi|300923689|ref|ZP_07139716.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 182-1]
 gi|300931916|ref|ZP_07147213.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 187-1]
 gi|300950762|ref|ZP_07164649.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 116-1]
 gi|300958414|ref|ZP_07170554.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 175-1]
 gi|301020021|ref|ZP_07184153.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 196-1]
 gi|301021821|ref|ZP_07185784.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 69-1]
 gi|301301931|ref|ZP_07208065.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 124-1]
 gi|301643601|ref|ZP_07243642.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 146-1]
 gi|307139719|ref|ZP_07499075.1| DNA topoisomerase IV subunit B [Escherichia coli H736]
 gi|307310343|ref|ZP_07589991.1| DNA topoisomerase IV, B subunit [Escherichia coli W]
 gi|312972707|ref|ZP_07786880.1| DNA topoisomerase IV, B subunit [Escherichia coli 1827-70]
 gi|331643730|ref|ZP_08344861.1| DNA topoisomerase IV, B subunit [Escherichia coli H736]
 gi|331654635|ref|ZP_08355635.1| DNA topoisomerase IV, B subunit [Escherichia coli M718]
 gi|331664646|ref|ZP_08365552.1| DNA topoisomerase IV, B subunit [Escherichia coli TA143]
 gi|331669944|ref|ZP_08370789.1| DNA topoisomerase IV, B subunit [Escherichia coli TA271]
 gi|331679108|ref|ZP_08379780.1| DNA topoisomerase IV, B subunit [Escherichia coli H591]
 gi|331684685|ref|ZP_08385277.1| DNA topoisomerase IV, B subunit [Escherichia coli H299]
 gi|464346|sp|P20083|PARE_ECOLI RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|882560|gb|AAA69198.1| topoisomerase IV subunit [Escherichia coli str. K-12 substr.
           MG1655]
 gi|1789408|gb|AAC76066.1| DNA topoisomerase IV, subunit B [Escherichia coli str. K-12 substr.
           MG1655]
 gi|81246698|gb|ABB67406.1| DNA topoisomerase IV subunit B [Shigella boydii Sb227]
 gi|85675833|dbj|BAE77086.1| DNA topoisomerase IV, subunit B [Escherichia coli str. K12 substr.
           W3110]
 gi|157068186|gb|ABV07441.1| DNA topoisomerase IV, B subunit [Escherichia coli HS]
 gi|157081051|gb|ABV20759.1| DNA topoisomerase IV, B subunit [Escherichia coli E24377A]
 gi|169753644|gb|ACA76343.1| DNA topoisomerase IV, B subunit [Escherichia coli ATCC 8739]
 gi|169890408|gb|ACB04115.1| DNA topoisomerase IV, subunit B [Escherichia coli str. K-12 substr.
           DH10B]
 gi|188488213|gb|EDU63316.1| DNA topoisomerase IV, B subunit [Escherichia coli 53638]
 gi|190902395|gb|EDV62132.1| DNA topoisomerase IV, B subunit [Escherichia coli B7A]
 gi|192932292|gb|EDV84890.1| DNA topoisomerase IV, B subunit [Escherichia coli E22]
 gi|192959345|gb|EDV89780.1| DNA topoisomerase IV, B subunit [Escherichia coli E110019]
 gi|194424201|gb|EDX40188.1| DNA topoisomerase IV, B subunit [Escherichia coli 101-1]
 gi|209913761|dbj|BAG78835.1| DNA topoisomerase IV subunit B [Escherichia coli SE11]
 gi|218353468|emb|CAU99567.1| DNA topoisomerase IV, subunit B [Escherichia coli 55989]
 gi|218362368|emb|CAQ99992.1| DNA topoisomerase IV, subunit B [Escherichia coli IAI1]
 gi|218371790|emb|CAR19643.1| DNA topoisomerase IV, subunit B [Escherichia coli IAI39]
 gi|218433754|emb|CAR14671.1| DNA topoisomerase IV, subunit B [Escherichia coli UMN026]
 gi|238860847|gb|ACR62845.1| DNA topoisomerase IV, subunit B [Escherichia coli BW2952]
 gi|242378582|emb|CAQ33369.1| topoisomerase IV subunit B, subunit of topoisomerase IV
           [Escherichia coli BL21(DE3)]
 gi|253323176|gb|ACT27778.1| DNA topoisomerase IV, B subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974880|gb|ACT40551.1| DNA topoisomerase IV subunit B [Escherichia coli B str. REL606]
 gi|253979036|gb|ACT44706.1| DNA topoisomerase IV subunit B [Escherichia coli BL21(DE3)]
 gi|257755812|dbj|BAI27314.1| DNA topoisomerase IV subunit B [Escherichia coli O26:H11 str.
           11368]
 gi|257760931|dbj|BAI32428.1| DNA topoisomerase IV subunit B [Escherichia coli O103:H2 str.
           12009]
 gi|257766140|dbj|BAI37635.1| DNA topoisomerase IV subunit B [Escherichia coli O111:H- str.
           11128]
 gi|260447934|gb|ACX38356.1| DNA topoisomerase IV, B subunit [Escherichia coli DH1]
 gi|291322460|gb|EFE61889.1| DNA topoisomerase IV [Escherichia coli B088]
 gi|291426651|gb|EFE99683.1| DNA topoisomerase IV subunit B [Escherichia coli FVEC1412]
 gi|291431831|gb|EFF04814.1| DNA topoisomerase IV [Escherichia coli B185]
 gi|298277525|gb|EFI19041.1| DNA topoisomerase 4 subunit B [Escherichia coli FVEC1302]
 gi|299881978|gb|EFI90189.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 196-1]
 gi|300314923|gb|EFJ64707.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 175-1]
 gi|300355182|gb|EFJ71052.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 198-1]
 gi|300397837|gb|EFJ81375.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 69-1]
 gi|300402302|gb|EFJ85840.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 84-1]
 gi|300415829|gb|EFJ99139.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 115-1]
 gi|300420056|gb|EFK03367.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 182-1]
 gi|300449932|gb|EFK13552.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 116-1]
 gi|300460339|gb|EFK23832.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 187-1]
 gi|300525761|gb|EFK46830.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 119-7]
 gi|300842912|gb|EFK70672.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 124-1]
 gi|301077985|gb|EFK92791.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 146-1]
 gi|306909238|gb|EFN39733.1| DNA topoisomerase IV, B subunit [Escherichia coli W]
 gi|309703462|emb|CBJ02802.1| putative DNA topoisomerase 4 subunit B [Escherichia coli ETEC
           H10407]
 gi|310332649|gb|EFP99862.1| DNA topoisomerase IV, B subunit [Escherichia coli 1827-70]
 gi|315062340|gb|ADT76667.1| DNA topoisomerase IV, subunit B [Escherichia coli W]
 gi|315137623|dbj|BAJ44782.1| DNA topoisomerase IV subunit B [Escherichia coli DH1]
 gi|315256940|gb|EFU36908.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 85-1]
 gi|315617300|gb|EFU97908.1| DNA topoisomerase IV, B subunit [Escherichia coli 3431]
 gi|320201942|gb|EFW76517.1| Topoisomerase IV subunit B [Escherichia coli EC4100B]
 gi|323154726|gb|EFZ40925.1| DNA topoisomerase IV, B subunit [Escherichia coli EPECa14]
 gi|323168127|gb|EFZ53814.1| DNA topoisomerase IV, B subunit [Shigella sonnei 53G]
 gi|323173726|gb|EFZ59355.1| DNA topoisomerase IV, B subunit [Escherichia coli LT-68]
 gi|323178735|gb|EFZ64311.1| DNA topoisomerase IV, B subunit [Escherichia coli 1180]
 gi|323188530|gb|EFZ73815.1| DNA topoisomerase IV, B subunit [Escherichia coli RN587/1]
 gi|323377073|gb|ADX49341.1| DNA topoisomerase IV, B subunit [Escherichia coli KO11]
 gi|323935968|gb|EGB32263.1| DNA topoisomerase IV [Escherichia coli E1520]
 gi|323941871|gb|EGB38050.1| DNA topoisomerase IV [Escherichia coli E482]
 gi|323946728|gb|EGB42748.1| DNA topoisomerase IV [Escherichia coli H120]
 gi|323960923|gb|EGB56542.1| DNA topoisomerase IV [Escherichia coli H489]
 gi|323971845|gb|EGB67070.1| DNA topoisomerase IV [Escherichia coli TA007]
 gi|324018128|gb|EGB87347.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 117-3]
 gi|324119640|gb|EGC13521.1| DNA topoisomerase IV [Escherichia coli E1167]
 gi|331037201|gb|EGI09425.1| DNA topoisomerase IV, B subunit [Escherichia coli H736]
 gi|331048017|gb|EGI20094.1| DNA topoisomerase IV, B subunit [Escherichia coli M718]
 gi|331058577|gb|EGI30558.1| DNA topoisomerase IV, B subunit [Escherichia coli TA143]
 gi|331062857|gb|EGI34771.1| DNA topoisomerase IV, B subunit [Escherichia coli TA271]
 gi|331073173|gb|EGI44496.1| DNA topoisomerase IV, B subunit [Escherichia coli H591]
 gi|331078300|gb|EGI49506.1| DNA topoisomerase IV, B subunit [Escherichia coli H299]
 gi|332102505|gb|EGJ05851.1| DNA topoisomerase IV subunit B [Shigella sp. D9]
          Length = 630

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 245/647 (37%), Positives = 362/647 (55%), Gaps = 26/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R   +++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL  + ++KA L   V+  +  +    E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G           V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A  L E  I  ++ R+R    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA  EE K+ +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ I+      + T   ++ L+  K +++R  ++QE+    +
Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627


>gi|325498583|gb|EGC96442.1| DNA topoisomerase IV subunit B [Escherichia fergusonii ECD227]
          Length = 630

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 245/647 (37%), Positives = 363/647 (56%), Gaps = 26/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R   +++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGNCGKRNTGTSVHFWPD-ETFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL  + ++KA L   V+  +  +    E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G    +      V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LPTLPEKPFIGNFSGETE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A  L E  I  ++ R+R    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFSLWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKHGHVYVAL 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA  EE K+ +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ I+      + T   ++ L+  K +++R  ++QE+    +
Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627


>gi|50841503|ref|YP_054730.1| DNA gyrase subunit B [Propionibacterium acnes KPA171202]
 gi|50839105|gb|AAT81772.1| DNA gyrase subunit B [Propionibacterium acnes KPA171202]
          Length = 690

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 251/662 (37%), Positives = 365/662 (55%), Gaps = 19/662 (2%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
              +   +YDA  I +LEGLE VR RPGMYIG T E+ LHH   E++DN++DE +AGY +
Sbjct: 35  PPTAVDGSYDAGQITVLEGLEAVRKRPGMYIGSTGERGLHHCVYEIVDNSVDEAMAGYCD 94

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I+V L  + +  V DNGRGIPV+ HP   +  T+ ++LT LHAGGKF N  Y++SGGLH
Sbjct: 95  TIQVELLDDNWCQVTDNGRGIPVKEHP-VEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLH 153

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDP 213
           GVG SVVNAL+    V V R    + Q FS G P  PLE+ E     +  GT + F+P  
Sbjct: 154 GVGSSVVNALAAHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDYEGTTVRFQPSD 213

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTY 272
           +IF     FD   L    +  A+L+  ++   +  + + A++ G P  E+F +  GLK Y
Sbjct: 214 EIFDAIV-FDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDY 272

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++     R +I+  I + ++ +     G +E A+ W       + ++ N I T EGG HE
Sbjct: 273 VRFLTGTRDVINPTIISLESHRPEEGMG-LEIAMQWNTSYATSVHTFANAINTIEGGAHE 331

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G R ALT  + ++ E      KR   +  DD+      ++S+ + EP+F GQTKTKL +
Sbjct: 332 EGFRAALTNTVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGN 391

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA--IRKL 447
            +A+  V+ AL +    +  +NP E   ++      ++ R+  RK R++ R     +   
Sbjct: 392 AEAKSFVQKALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARNRKGLLGST 451

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKL DCS       E+FIVEGDSAGGSA Q R+   QA+LPLRGKILNV  A  ++ 
Sbjct: 452 SLPGKLKDCSSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRA 511

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             ++ I  ++ ALG      +  + LRY K+I+M DADVDGAHI +LLLT  ++ M  +I
Sbjct: 512 LGSETIESIINALGTGVHEDFDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVI 571

Query: 568 EQKHLFLISPPLFRITQGTKSVY-AHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEM 623
           +  H++L  PPLFR+         A+ +E +  + E+   HGK   +   I R+KGLGEM
Sbjct: 572 DAGHVYLAQPPLFRLRWTNSPHELAYSDEERDLLREDGLTHGKKLPQVNPIQRYKGLGEM 631

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
            A  L +T MD +KR LL+V +              + LMG   ++R  FIQ  A  +  
Sbjct: 632 DAEDLWDTTMDPDKRLLLQVTLED----AALADQMFSILMGEDVEQRRSFIQRNAKDVRF 687

Query: 684 VG 685
           + 
Sbjct: 688 LD 689


>gi|15833172|ref|NP_311945.1| DNA topoisomerase IV subunit B [Escherichia coli O157:H7 str.
           Sakai]
 gi|168747459|ref|ZP_02772481.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4113]
 gi|168754001|ref|ZP_02779008.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4401]
 gi|168760192|ref|ZP_02785199.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4501]
 gi|168767054|ref|ZP_02792061.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773312|ref|ZP_02798319.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4196]
 gi|168781907|ref|ZP_02806914.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4076]
 gi|168785905|ref|ZP_02810912.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC869]
 gi|168797623|ref|ZP_02822630.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC508]
 gi|195937177|ref|ZP_03082559.1| DNA topoisomerase IV subunit B [Escherichia coli O157:H7 str.
           EC4024]
 gi|208807253|ref|ZP_03249590.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208811986|ref|ZP_03253315.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820772|ref|ZP_03261092.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209399667|ref|YP_002272509.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|217327420|ref|ZP_03443503.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|254794987|ref|YP_003079824.1| DNA topoisomerase IV subunit B [Escherichia coli O157:H7 str.
           TW14359]
 gi|261228047|ref|ZP_05942328.1| DNA topoisomerase IV, subunit B [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261254903|ref|ZP_05947436.1| DNA topoisomerase IV, subunit B [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291284413|ref|YP_003501231.1| DNA topoisomerase IV, B subunit [Escherichia coli O55:H7 str.
           CB9615]
 gi|13363391|dbj|BAB37341.1| DNA topoisomerase IV subunit B [Escherichia coli O157:H7 str.
           Sakai]
 gi|187770751|gb|EDU34595.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017779|gb|EDU55901.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4113]
 gi|189000532|gb|EDU69518.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358750|gb|EDU77169.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4401]
 gi|189363670|gb|EDU82089.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4486]
 gi|189369291|gb|EDU87707.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4501]
 gi|189373910|gb|EDU92326.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC869]
 gi|189379786|gb|EDU98202.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC508]
 gi|208727054|gb|EDZ76655.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208733263|gb|EDZ81950.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740895|gb|EDZ88577.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209161067|gb|ACI38500.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|209759538|gb|ACI78081.1| DNA topoisomerase IV subunit B [Escherichia coli]
 gi|209759540|gb|ACI78082.1| DNA topoisomerase IV subunit B [Escherichia coli]
 gi|209759542|gb|ACI78083.1| DNA topoisomerase IV subunit B [Escherichia coli]
 gi|209759544|gb|ACI78084.1| DNA topoisomerase IV subunit B [Escherichia coli]
 gi|209759546|gb|ACI78085.1| DNA topoisomerase IV subunit B [Escherichia coli]
 gi|217319787|gb|EEC28212.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|254594387|gb|ACT73748.1| DNA topoisomerase IV, subunit B [Escherichia coli O157:H7 str.
           TW14359]
 gi|290764286|gb|ADD58247.1| DNA topoisomerase IV, B subunit [Escherichia coli O55:H7 str.
           CB9615]
 gi|320189386|gb|EFW64045.1| Topoisomerase IV subunit B [Escherichia coli O157:H7 str. EC1212]
 gi|320640109|gb|EFX09681.1| DNA topoisomerase IV subunit B [Escherichia coli O157:H7 str.
           G5101]
 gi|320645406|gb|EFX14415.1| DNA topoisomerase IV subunit B [Escherichia coli O157:H- str.
           493-89]
 gi|320650718|gb|EFX19175.1| DNA topoisomerase IV subunit B [Escherichia coli O157:H- str. H
           2687]
 gi|320656412|gb|EFX24319.1| DNA topoisomerase IV subunit B [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320661785|gb|EFX29193.1| DNA topoisomerase IV subunit B [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666937|gb|EFX33913.1| DNA topoisomerase IV subunit B [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326337739|gb|EGD61573.1| Topoisomerase IV subunit B [Escherichia coli O157:H7 str. 1125]
 gi|326347303|gb|EGD71028.1| Topoisomerase IV subunit B [Escherichia coli O157:H7 str. 1044]
          Length = 630

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 245/647 (37%), Positives = 362/647 (55%), Gaps = 26/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R   +++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGNCGKRNTGTSVHFWPD-ETFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL  + ++KA L   V+  +  +    E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G           V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A  L E  I  ++ R+R    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA  EE K+ +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ I+      + T   ++ L+  K +++R  ++QE+    +
Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627


>gi|26249607|ref|NP_755647.1| DNA topoisomerase IV subunit B [Escherichia coli CFT073]
 gi|82778361|ref|YP_404710.1| DNA topoisomerase IV subunit B [Shigella dysenteriae Sd197]
 gi|91212456|ref|YP_542442.1| DNA topoisomerase IV subunit B [Escherichia coli UTI89]
 gi|110643276|ref|YP_671006.1| DNA topoisomerase IV subunit B [Escherichia coli 536]
 gi|117625344|ref|YP_854666.1| DNA topoisomerase IV subunit B [Escherichia coli APEC O1]
 gi|187730460|ref|YP_001881797.1| DNA topoisomerase IV subunit B [Shigella boydii CDC 3083-94]
 gi|191172547|ref|ZP_03034087.1| DNA topoisomerase IV, B subunit [Escherichia coli F11]
 gi|215488363|ref|YP_002330794.1| DNA topoisomerase IV subunit B [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218560115|ref|YP_002393028.1| DNA topoisomerase IV subunit B [Escherichia coli S88]
 gi|218691333|ref|YP_002399545.1| DNA topoisomerase IV subunit B [Escherichia coli ED1a]
 gi|227887749|ref|ZP_04005554.1| DNA topoisomerase IV subunit B [Escherichia coli 83972]
 gi|237706211|ref|ZP_04536692.1| topoisomerase IV subunit B [Escherichia sp. 3_2_53FAA]
 gi|300973274|ref|ZP_07172113.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 45-1]
 gi|300993488|ref|ZP_07180429.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 200-1]
 gi|301048139|ref|ZP_07195176.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 185-1]
 gi|306816617|ref|ZP_07450749.1| DNA topoisomerase IV subunit B [Escherichia coli NC101]
 gi|309785325|ref|ZP_07679956.1| DNA topoisomerase IV, B subunit [Shigella dysenteriae 1617]
 gi|312968625|ref|ZP_07782834.1| DNA topoisomerase IV, B subunit [Escherichia coli 2362-75]
 gi|331648830|ref|ZP_08349918.1| DNA topoisomerase IV, B subunit [Escherichia coli M605]
 gi|331659322|ref|ZP_08360264.1| DNA topoisomerase IV, B subunit [Escherichia coli TA206]
 gi|26110015|gb|AAN82220.1|AE016766_308 Topoisomerase IV subunit B [Escherichia coli CFT073]
 gi|81242509|gb|ABB63219.1| DNA topoisomerase IV subunit B [Shigella dysenteriae Sd197]
 gi|91074030|gb|ABE08911.1| topoisomerase IV subunit B [Escherichia coli UTI89]
 gi|110344868|gb|ABG71105.1| topoisomerase IV subunit B [Escherichia coli 536]
 gi|115514468|gb|ABJ02543.1| DNA topoisomerase IV subunit B [Escherichia coli APEC O1]
 gi|168812185|gb|ACA30266.1| ParE [Shigella boydii]
 gi|187427452|gb|ACD06726.1| DNA topoisomerase IV, B subunit [Shigella boydii CDC 3083-94]
 gi|190907215|gb|EDV66814.1| DNA topoisomerase IV, B subunit [Escherichia coli F11]
 gi|215266435|emb|CAS10873.1| DNA topoisomerase IV, subunit B [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218366884|emb|CAR04654.1| DNA topoisomerase IV, subunit B [Escherichia coli S88]
 gi|218428897|emb|CAR09845.2| DNA topoisomerase IV, subunit B [Escherichia coli ED1a]
 gi|222034762|emb|CAP77504.1| DNA topoisomerase 4 subunit B [Escherichia coli LF82]
 gi|226899251|gb|EEH85510.1| topoisomerase IV subunit B [Escherichia sp. 3_2_53FAA]
 gi|227835145|gb|EEJ45611.1| DNA topoisomerase IV subunit B [Escherichia coli 83972]
 gi|294490177|gb|ADE88933.1| DNA topoisomerase IV, B subunit [Escherichia coli IHE3034]
 gi|300299975|gb|EFJ56360.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 185-1]
 gi|300305085|gb|EFJ59605.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 200-1]
 gi|300410854|gb|EFJ94392.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 45-1]
 gi|305850182|gb|EFM50641.1| DNA topoisomerase IV subunit B [Escherichia coli NC101]
 gi|307555134|gb|ADN47909.1| topoisomerase IV subunit B [Escherichia coli ABU 83972]
 gi|307625356|gb|ADN69660.1| DNA topoisomerase IV subunit B [Escherichia coli UM146]
 gi|308926445|gb|EFP71921.1| DNA topoisomerase IV, B subunit [Shigella dysenteriae 1617]
 gi|312286843|gb|EFR14754.1| DNA topoisomerase IV, B subunit [Escherichia coli 2362-75]
 gi|312947600|gb|ADR28427.1| DNA topoisomerase IV subunit B [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315288799|gb|EFU48197.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 110-3]
 gi|315295079|gb|EFU54416.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 153-1]
 gi|315297702|gb|EFU56979.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 16-3]
 gi|320184185|gb|EFW59001.1| Topoisomerase IV subunit B [Shigella flexneri CDC 796-83]
 gi|323951438|gb|EGB47313.1| DNA topoisomerase IV [Escherichia coli H252]
 gi|323957810|gb|EGB53524.1| DNA topoisomerase IV [Escherichia coli H263]
 gi|324011956|gb|EGB81175.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 60-1]
 gi|330909096|gb|EGH37610.1| topoisomerase 4 subunit B [Escherichia coli AA86]
 gi|331042577|gb|EGI14719.1| DNA topoisomerase IV, B subunit [Escherichia coli M605]
 gi|331053904|gb|EGI25933.1| DNA topoisomerase IV, B subunit [Escherichia coli TA206]
 gi|332092196|gb|EGI97274.1| DNA topoisomerase IV, B subunit [Shigella boydii 3594-74]
          Length = 630

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 246/647 (38%), Positives = 362/647 (55%), Gaps = 26/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R   I++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVNVRRDGQIYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL  + ++KA L   V+  +  +    E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G           V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A  L E  I  ++ R+R    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA  EE K+ +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ I+      + T   ++ L+  K +++R  ++QE+    +
Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627


>gi|313835161|gb|EFS72875.1| DNA gyrase, B subunit [Propionibacterium acnes HL037PA2]
 gi|314929137|gb|EFS92968.1| DNA gyrase, B subunit [Propionibacterium acnes HL044PA1]
 gi|314970916|gb|EFT15014.1| DNA gyrase, B subunit [Propionibacterium acnes HL037PA3]
          Length = 690

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 246/662 (37%), Positives = 361/662 (54%), Gaps = 19/662 (2%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
              +   +YDA  I +LEGLE VR RPGMYIG T E+ LHH   E++DN++DE +AGY +
Sbjct: 35  PPMTVDGSYDAGQITVLEGLEAVRKRPGMYIGSTGERGLHHCVYEIVDNSVDEAMAGYCD 94

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I+V L  + +  V DNGRGIPV+ HP   +  T+ ++LT LHAGGKF N  Y++SGGLH
Sbjct: 95  TIQVELLDDNWCQVTDNGRGIPVKEHP-VEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLH 153

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDP 213
           GVG SVVNAL+    V V R    + Q F+ G P  PLE+ E     +  GT + F+P  
Sbjct: 154 GVGSSVVNALAAHFVVEVRRDGYHWRQSFTLGEPDGPLEQLEALGPDDCEGTTVRFQPSD 213

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTY 272
           +IF     F    L    +  A+L+  ++   +  + + A++ G P  E+F +  GLK Y
Sbjct: 214 EIFDAIV-FGYETLSNRFREMAFLNKGLRIVLTDRRADHADEEGNPVHEDFLYKEGLKDY 272

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHE 331
           ++     R +I+  I + ++ +     G +E A+ W       + ++ N I T EGG HE
Sbjct: 273 VRFLTGTRDVINPTIISLESHRPEEGMG-LEIAMQWNTSYTTSVHTFANAINTIEGGAHE 331

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G R ALT  + ++ E      KR   +  DD+      ++S+ + EP+F GQTKTKL +
Sbjct: 332 EGFRAALTNTVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGN 391

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA--IRKL 447
            +A+  V+  L +    +  +NP E   ++      ++ R+  RK R++ R     +   
Sbjct: 392 AEAKSFVQKTLNEKLSDWFEENPNEGKNIVRKSQAAAQARVAARKARDLARNRKGLLGST 451

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKL DCS       E+FIVEGDSAGGSA Q R+   QA+LPLRGKILNV  A  ++ 
Sbjct: 452 SLPGKLKDCSSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRA 511

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             ++ I  ++ ALG      +  + LRY K+I+M DADVDGAHI +LLLT  ++ M  +I
Sbjct: 512 LGSETIESIINALGTGVHEDFDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVI 571

Query: 568 EQKHLFLISPPLFRITQGTKSVY-AHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEM 623
           +  H++L  PPLFR+         A+ +E +  +  +   H K   +   I R+KGLGEM
Sbjct: 572 DAGHVYLAQPPLFRLRWTNSPHELAYSDEERDLLRADGLAHAKKLPQINPIQRYKGLGEM 631

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
            A  L +T MD +KR LL+V +              + LMG   ++R  FIQ  A  +  
Sbjct: 632 DAEDLWDTTMDPDKRLLLQVTLED----AALADQMFSILMGEDVEQRRSFIQRNAKDVRF 687

Query: 684 VG 685
           + 
Sbjct: 688 LD 689


>gi|30064380|ref|NP_838551.1| DNA topoisomerase IV subunit B [Shigella flexneri 2a str. 2457T]
 gi|56480243|ref|NP_708841.2| DNA topoisomerase IV subunit B [Shigella flexneri 2a str. 301]
 gi|30042637|gb|AAP18361.1| DNA topoisomerase IV subunit B [Shigella flexneri 2a str. 2457T]
 gi|56383794|gb|AAN44548.2| DNA topoisomerase IV subunit B [Shigella flexneri 2a str. 301]
 gi|281602417|gb|ADA75401.1| DNA topoisomerase IV subunit B [Shigella flexneri 2002017]
 gi|313648143|gb|EFS12589.1| DNA topoisomerase IV, B subunit [Shigella flexneri 2a str. 2457T]
          Length = 630

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 245/647 (37%), Positives = 362/647 (55%), Gaps = 26/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R   +++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL  + ++KA L   V+  +  +    E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G           V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A  L E  I  ++ R+R    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+
Sbjct: 405 TAQGLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA  EE K+ +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ I+      + T   ++ L+  K +++R  ++QE+    +
Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627


>gi|256823911|ref|YP_003147871.1| DNA gyrase subunit B [Kytococcus sedentarius DSM 20547]
 gi|256687304|gb|ACV05106.1| DNA gyrase subunit B [Kytococcus sedentarius DSM 20547]
          Length = 701

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 239/702 (34%), Positives = 360/702 (51%), Gaps = 56/702 (7%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
                  + +YDASS+++LEGLE VR RPGMYIG T E+ LHHL  E++DNA+DE +AG+
Sbjct: 5   PIQTDQQAPSYDASSLQVLEGLEAVRKRPGMYIGSTGERGLHHLVWEIVDNAVDEHLAGH 64

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ IEV++  +  + VVDNGRGIP + H K    S +E++LT LHAGGKF   +Y +SGG
Sbjct: 65  ADRIEVTILPDNAIRVVDNGRGIPTDVHAK-EGISGVELVLTQLHAGGKFGGDSYAVSGG 123

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK-VRNKRGTRITFRPD 212
           LHGVG SVVNALS    V V ++  +F Q F+ G+P +PL K E+   +  GT IT+ P 
Sbjct: 124 LHGVGSSVVNALSSRFEVEVRQKGHVFRQSFTVGVPDAPLSKDEEIAEDVTGTTITYWPS 183

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG---------------- 256
            +IF      D   L    Q   +L+  +    + ++                       
Sbjct: 184 AEIFDTTV-IDFETLRARFQQTCFLNKGLTIQLTDERPRVTDADDEGLDDVDTDIAEGLE 242

Query: 257 ------------------------IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
                                    P    + +  GL  Y++    ++            
Sbjct: 243 EHEDGTPIEDGQPDADQPATAAATKPRTVTYRYDDGLLDYVRHLNNSKKTQPVNDEIIAF 302

Query: 293 EKKGTHRG-TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
           E + + R    E A+ W       + +Y N++ T EGGTHE G R ALTR + ++A   +
Sbjct: 303 ETEDSERMLQCEVAMQWTSSYSESVHTYANSVNTHEGGTHEEGFRAALTRLVNEFARANK 362

Query: 351 --NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
              ++  ++  +D+      ++SV + EP+F GQTKTKL + + +  V+ A+ D   H+L
Sbjct: 363 LLKEKDPALTGEDVREGLTAVISVKLGEPQFEGQTKTKLGNSEVKGFVQRAMADQLGHWL 422

Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELF 467
             +P E   ++   ++ ++ RL  RK RE  R+  +     L  KL DC  N    +E+F
Sbjct: 423 EAHPGEGKAIVGKAVQAAQARLAARKAREATRRKGLLESGGLAAKLKDCQSNDPTVSEIF 482

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           IVEGDSAGGSA   RN  NQA+LPLRGKILNV  A  ++I +N ++  L+ + G     +
Sbjct: 483 IVEGDSAGGSAIAGRNPFNQAILPLRGKILNVEKARLDRILSNTEVQALISSFGTGIGEE 542

Query: 528 YREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ-GT 586
           +     RY K+++M DADVDG HI +LLLT  ++ M  LIE  +++L  PPL+R+     
Sbjct: 543 FDITRARYHKIVLMADADVDGMHIRTLLLTLLFRFMKPLIEHGYVYLAQPPLYRLKWTNA 602

Query: 587 KSVYAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRV 643
           +  +A  +  +  + E     G+   +   + R+KGLGEM   +L ET MD + R L +V
Sbjct: 603 EHDFAFTDRERDALTEAGVAKGRRLPKENGVQRYKGLGEMNYQELWETTMDPDNRVLRQV 662

Query: 644 EINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            ++             + LMG   + R  FIQ  A  +  + 
Sbjct: 663 TMDD----AAAADQVFSVLMGEDVESRRSFIQRNAHDVRFLD 700


>gi|324005383|gb|EGB74602.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 57-2]
          Length = 630

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 246/647 (38%), Positives = 363/647 (56%), Gaps = 26/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R   I++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVNVRRDGQIYNIAFENGETVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL  + ++KA L   V+  +  +    E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G           V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A  L E  I  ++ R+R    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S+     LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 465 SVAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA  EE K+ +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ I+      + T   ++ L+  K +++R  ++QE+    +
Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627


>gi|293412409|ref|ZP_06655132.1| DNA topoisomerase IV [Escherichia coli B354]
 gi|291469180|gb|EFF11671.1| DNA topoisomerase IV [Escherichia coli B354]
          Length = 630

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 245/647 (37%), Positives = 362/647 (55%), Gaps = 26/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R   +++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVIGTCGKRNTGTSVHFWPD-ETFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL  + ++KA L   V+  +  +    E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G           V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A  L E  I  ++ R+R    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFTLWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA  EE K+ +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ I+      + T   ++ L+  K +++R  ++QE+    +
Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627


>gi|15805931|ref|NP_294630.1| DNA gyrase subunit B [Deinococcus radiodurans R1]
 gi|6458625|gb|AAF10481.1|AE001943_1 DNA gyrase, subunit B [Deinococcus radiodurans R1]
          Length = 663

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 253/660 (38%), Positives = 365/660 (55%), Gaps = 25/660 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYI-GGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
            +D+Y+A  I +LEG++ VR RPGMY+ GGT     H L +E+IDN +DE +AG+A  I+
Sbjct: 9   TADDYNADQISVLEGMDAVRKRPGMYVQGGTGIDGYHQLLTEIIDNGIDEGLAGFAGEIQ 68

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           + L  +G  TV D+GRGIPV+   K   +  +E+I + LHAGGKF    Y++SGGLHGVG
Sbjct: 69  IVLHADGSATVTDDGRGIPVDIM-KSKGRPAIEVIFSELHAGGKFGQGAYKVSGGLHGVG 127

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK--RGTRITFRPDPKIF 216
            +VVNALS  L VTV +   +   +F RG+ + PLE            T+++F PDP IF
Sbjct: 128 STVVNALSTYLDVTVNKHKQLHHIRFERGVLVQPLEVLGATPKDVKWSTKVSFHPDPTIF 187

Query: 217 GDK-AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
            +    FD  R+    +  AYL+G  K     ++      G  ++E F+  GG+  + + 
Sbjct: 188 KEFDNQFDYLRIRNRLRELAYLTGL-KIVIRDERTELH-GGEIKEEVFHEKGGIANFARA 245

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLR 335
            + + + +  +               V +  A    +  I +Y N I T +GGT  +G +
Sbjct: 246 LVTDDTKLLYDQPVVMRGTHAEVEVEVAFIHANTYASDNILTYANMIRTRDGGTPLTGFK 305

Query: 336 VALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            A TR + KYA+     +A +     DDL+     ++SV + +P+F  Q K KL++ +AQ
Sbjct: 306 TAYTRVLNKYAKDKNLIKAGNPVPSGDDLLEGIYCVVSVKVGDPQFESQAKVKLLNSEAQ 365

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGK 452
             V   + + F  +L +NP     ++E   E +  R   RK R++  R   +    LPGK
Sbjct: 366 TAVNAIVGEKFAQFLEENPKIGKTIVEKAAEAARARDAARKARDIVRRSNPLENDDLPGK 425

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS      +ELFIVEG+SAGGSAK  R R  QA+LPLRGKILNV  A   KI  N +
Sbjct: 426 LADCSSQDPAESELFIVEGNSAGGSAKGGRERRFQAILPLRGKILNVEKAELNKILKNAE 485

Query: 513 IMDLVQALGCRTR-----SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
           I  L+ A+G          ++  E+LRY K++IMTDAD+DG HI +LLLTFF++ M  ++
Sbjct: 486 IRSLIGAIGAGFDGKGEEMRFDLENLRYHKIVIMTDADMDGGHITTLLLTFFFRFMRPIV 545

Query: 568 EQKHLFLISPPLFRI-----TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
           EQ HL++  PPL++I     T+  K VY    E  ++ + +  K GK K EI RFKGLGE
Sbjct: 546 EQGHLYIAQPPLYKITVGAQTKNNKGVYLFTNEELKEHVADAVKAGK-KYEIQRFKGLGE 604

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           M A QL ET M+   R L RV I+     L    +  + LMG++   R  FI+E A F +
Sbjct: 605 MNAEQLWETTMNPETRVLKRVSIDD----LIIANEIFDALMGSEVAPRKDFIRENARFAE 660


>gi|320176204|gb|EFW51268.1| Topoisomerase IV subunit B [Shigella dysenteriae CDC 74-1112]
          Length = 630

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 246/647 (38%), Positives = 362/647 (55%), Gaps = 26/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R   I++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVNVRRDGQIYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL  + ++KA L   V+  +  +    E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G           V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A  L E  I  ++ R+R    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA  EE K+ +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ I+      + T   ++ L+  K +++R  ++QE+    +
Sbjct: 583 TRRLMQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627


>gi|73697709|gb|AAZ81471.1| DNA gyrase subunit B [Acholeplasma palmae]
          Length = 588

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 241/606 (39%), Positives = 347/606 (57%), Gaps = 21/606 (3%)

Query: 58  VRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIP 117
           VR RPGMYIG T E+ LHHL  E++DN++DE +AGYA+ I V +  +  + V DNGRGIP
Sbjct: 1   VRKRPGMYIGSTGERGLHHLVWEIVDNSIDEALAGYADTITVEVLKDNIIRVTDNGRGIP 60

Query: 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN 177
           V  H K   K  +E ILTTLHAGGKFD S+Y++SGGLHGVG SVVNALS    V V    
Sbjct: 61  VGIHHK-TGKPAVETILTTLHAGGKFDGSSYKVSGGLHGVGASVVNALSSYFIVEVHVNG 119

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            I  Q+F +G P++ L+      ++ GT ITF  DP +F +   +D   L    Q  A+L
Sbjct: 120 KIHKQRFEKGFPVTGLDIIGDTTHQ-GTVITFLADPDVFKETTIYDFETLRSRVQQLAFL 178

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +K   + D++       P    +++ GGL  Y+      ++ I++  F  + E  G 
Sbjct: 179 NRNIKITITDDRKE-----EPVSFTYHYEGGLLEYIDFLTGTKTKINANKFYAEKEVDGI 233

Query: 298 HRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAI 355
              T+E A+ + +        + N I T EGG HE G ++AL R + KYA+     K+  
Sbjct: 234 ---TLEVALQYTDSYATNLYSFTNNIPTHEGGMHEDGFKMALNRVLAKYAKDNNLLKKDE 290

Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415
             ISDD       I+SV   +P+F GQTKTKL +++ ++     + + F+ YL++NP +A
Sbjct: 291 PFISDDTREGLTAIISVKHPDPQFEGQTKTKLGNVEVRQIASQVVGETFERYLLENPTDA 350

Query: 416 TKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSA 474
             +++  ++        R+ +    RK+ +  L    KLADC       +EL+IVEGDSA
Sbjct: 351 KAIIDKSLLAARARIAARKAREATRRKSPLDALGFASKLADCRSKNPAISELYIVEGDSA 410

Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
           GGSAKQ R    QA+LPLRGK+LNV  A  +K+ +N +I+ L+QA+G     ++  E  R
Sbjct: 411 GGSAKQGRESEYQAILPLRGKVLNVEKARIDKVLSNNEILSLIQAIGTGIGEEFNPEKAR 470

Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDE 594
           Y K++IMTDADVDGAHI +LLLTFF++    LI+  +++   PPL+++  G K  Y +D+
Sbjct: 471 YHKIVIMTDADVDGAHIRTLLLTFFFRYFKPLIDLGYIYFAQPPLYKLQFGKKVEYVYDD 530

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
           E   K LE+      GK  + R+KGLGEM   QL ET MD   RTLL+V +   +    +
Sbjct: 531 EALPKALEQLG----GKPSMQRYKGLGEMNPEQLWETTMDPETRTLLQVTMKDAI----E 582

Query: 655 TQDSIN 660
                N
Sbjct: 583 ADQVFN 588


>gi|300937487|ref|ZP_07152312.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 21-1]
 gi|331674577|ref|ZP_08375337.1| DNA topoisomerase IV, B subunit [Escherichia coli TA280]
 gi|300457479|gb|EFK20972.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 21-1]
 gi|331068671|gb|EGI40066.1| DNA topoisomerase IV, B subunit [Escherichia coli TA280]
          Length = 630

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 245/647 (37%), Positives = 362/647 (55%), Gaps = 26/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R   +++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL  + ++KA L   V+  +  +    E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G           V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A  L E  I  ++ R+R    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFTLWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA  EE K+ +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ I+      + T   ++ L+  K +++R  ++QE+    +
Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627


>gi|170679703|ref|YP_001745304.1| DNA topoisomerase IV subunit B [Escherichia coli SMS-3-5]
 gi|170517421|gb|ACB15599.1| DNA topoisomerase IV, B subunit [Escherichia coli SMS-3-5]
          Length = 630

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 246/647 (38%), Positives = 362/647 (55%), Gaps = 26/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R   I++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVNVRRDGQIYNIAFENGEKVQDLQVIGTCGKRNTGTSVHFWPD-ETFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL  + ++KA L   V+  +  +    E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G           V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A  L E  I  ++ R+R    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFTLWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA  EE K+ +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ I+      + T   ++ L+  K +++R  ++QE+    +
Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627


>gi|314965771|gb|EFT09870.1| DNA gyrase, B subunit [Propionibacterium acnes HL082PA2]
 gi|315094452|gb|EFT66428.1| DNA gyrase, B subunit [Propionibacterium acnes HL060PA1]
 gi|327328947|gb|EGE70707.1| DNA gyrase, B subunit [Propionibacterium acnes HL103PA1]
          Length = 685

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 251/662 (37%), Positives = 365/662 (55%), Gaps = 19/662 (2%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
              +  D+YDA  I +LEGLE VR RPGMYIG T E+ LHH   E++DN++DE +AGY +
Sbjct: 30  PPTTVDDSYDAGQITVLEGLEAVRKRPGMYIGSTGERGLHHCVYEIVDNSVDEAMAGYCD 89

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I+V L  + +  V DNGRGIPV+ HP   +  T+ ++LT LHAGGKF N  Y++SGGLH
Sbjct: 90  TIQVELLDDNWCQVTDNGRGIPVKEHP-VEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLH 148

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDP 213
           GVG SVVNAL+    V V R    + Q FS G P  PLE+ E     +  GT + F+P  
Sbjct: 149 GVGSSVVNALAAHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDHEGTTVRFQPSD 208

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTY 272
           +IF     FD   L    +  A+L+  ++   +  + + A++ G P  E+F +  GLK Y
Sbjct: 209 EIFDAIV-FDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDY 267

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++     R +I+  I + ++ +     G +E A+ W       + ++ N I T EGG HE
Sbjct: 268 VRFLTGTRDVINPTIISLESHRPEEGMG-LEIAMQWNTSYATSVHTFANAINTIEGGAHE 326

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G R ALT  + ++ E      KR   +  DD+      ++S+ + EP+F GQTKTKL +
Sbjct: 327 EGFRAALTNTVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGN 386

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA--IRKL 447
            +A+  V+ AL +    +  +NP E   ++      ++ R+  RK R++ R     +   
Sbjct: 387 AEAKSFVQKALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARSRKGLLGST 446

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKL DCS       E+FIVEGDSAGGSA Q R+   QA+LPLRGKILNV  A  ++ 
Sbjct: 447 SLPGKLKDCSSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRA 506

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             ++ I  ++ ALG      +  + LRY K+I+M DADVDGAHI +LLLT  ++ M  +I
Sbjct: 507 LGSETIESIINALGTGVHEDFDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVI 566

Query: 568 EQKHLFLISPPLFRITQGTKSVY-AHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEM 623
           +  H++L  PPLFR+         A+ +E +  +  +   HGK   +   I R+KGLGEM
Sbjct: 567 DAGHVYLAQPPLFRLRWTNSPHELAYSDEERDLLRGDGLTHGKKLPQVNPIQRYKGLGEM 626

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
            A  L +T MD +KR LL+V +              + LMG   ++R  FIQ  A  +  
Sbjct: 627 DAEDLWDTTMDPDKRLLLQVTLED----AALADQMFSILMGEDVEQRRSFIQRNAKDVRF 682

Query: 684 VG 685
           + 
Sbjct: 683 LD 684


>gi|313765016|gb|EFS36380.1| DNA gyrase, B subunit [Propionibacterium acnes HL013PA1]
 gi|313815427|gb|EFS53141.1| DNA gyrase, B subunit [Propionibacterium acnes HL059PA1]
 gi|313828992|gb|EFS66706.1| DNA gyrase, B subunit [Propionibacterium acnes HL063PA2]
 gi|314916223|gb|EFS80054.1| DNA gyrase, B subunit [Propionibacterium acnes HL005PA4]
 gi|314917490|gb|EFS81321.1| DNA gyrase, B subunit [Propionibacterium acnes HL050PA1]
 gi|314921826|gb|EFS85657.1| DNA gyrase, B subunit [Propionibacterium acnes HL050PA3]
 gi|314930909|gb|EFS94740.1| DNA gyrase, B subunit [Propionibacterium acnes HL067PA1]
 gi|314955295|gb|EFS99700.1| DNA gyrase, B subunit [Propionibacterium acnes HL027PA1]
 gi|314959168|gb|EFT03270.1| DNA gyrase, B subunit [Propionibacterium acnes HL002PA1]
 gi|314969073|gb|EFT13171.1| DNA gyrase, B subunit [Propionibacterium acnes HL037PA1]
 gi|315099333|gb|EFT71309.1| DNA gyrase, B subunit [Propionibacterium acnes HL059PA2]
 gi|315102327|gb|EFT74303.1| DNA gyrase, B subunit [Propionibacterium acnes HL046PA1]
 gi|315109856|gb|EFT81832.1| DNA gyrase, B subunit [Propionibacterium acnes HL030PA2]
 gi|327454261|gb|EGF00916.1| DNA gyrase, B subunit [Propionibacterium acnes HL087PA3]
 gi|328756019|gb|EGF69635.1| DNA gyrase, B subunit [Propionibacterium acnes HL087PA1]
 gi|328758863|gb|EGF72479.1| DNA gyrase, B subunit [Propionibacterium acnes HL025PA2]
          Length = 685

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 251/662 (37%), Positives = 365/662 (55%), Gaps = 19/662 (2%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
              +   +YDA  I +LEGLE VR RPGMYIG T E+ LHH   E++DN++DE +AGY +
Sbjct: 30  PPTAVDGSYDAGQITVLEGLEAVRKRPGMYIGSTGERGLHHCVYEIVDNSVDEAMAGYCD 89

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I+V L  + +  V DNGRGIPV+ HP   +  T+ ++LT LHAGGKF N  Y++SGGLH
Sbjct: 90  TIQVELLDDNWCQVTDNGRGIPVKEHP-VEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLH 148

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDP 213
           GVG SVVNAL+    V V R    + Q FS G P  PLE+ E     +  GT + F+P  
Sbjct: 149 GVGSSVVNALAAHFIVEVRRDGYHWLQSFSLGEPDGPLEQFEALGPDDHEGTTVRFQPSD 208

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTY 272
           +IF     FD   L    +  A+L+  ++   +  + + A++ G P  E+F +  GLK Y
Sbjct: 209 EIFDAIV-FDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDY 267

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++     R +I+  I + ++ +     G +E A+ W       + ++ N I T EGG HE
Sbjct: 268 VRFLTGTRDVINPTIISLESHRPEEGMG-LEIAMQWNTSYATSVHTFANAINTIEGGAHE 326

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G R ALT  + ++ E      KR   +  DD+      ++S+ + EP+F GQTKTKL +
Sbjct: 327 EGFRAALTNTVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGN 386

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA--IRKL 447
            +A+  V+ AL +    +  +NP E   ++      ++ R+  RK R++ R     +   
Sbjct: 387 AEAKSFVQKALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARNRKGLLGST 446

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKL DCS       E+FIVEGDSAGGSA Q R+   QA+LPLRGKILNV  A  ++ 
Sbjct: 447 SLPGKLKDCSSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRA 506

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             ++ I  ++ ALG      +  + LRY K+I+M DADVDGAHI +LLLT  ++ M  +I
Sbjct: 507 LGSETIESIINALGTGVHEDFDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVI 566

Query: 568 EQKHLFLISPPLFRITQGTKSVY-AHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEM 623
           +  H++L  PPLFR+         A+ +E +  + E+   HGK   +   I R+KGLGEM
Sbjct: 567 DAGHVYLAQPPLFRLRWTNSPHELAYSDEERDLLREDGLTHGKKLPQVNPIQRYKGLGEM 626

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
            A  L +T MD +KR LL+V +              + LMG   ++R  FIQ  A  +  
Sbjct: 627 DAEDLWDTTMDPDKRLLLQVTLED----AALADQMFSILMGEDVEQRRSFIQRNAKDVRF 682

Query: 684 VG 685
           + 
Sbjct: 683 LD 684


>gi|218550279|ref|YP_002384070.1| DNA topoisomerase IV subunit B [Escherichia fergusonii ATCC 35469]
 gi|218357820|emb|CAQ90464.1| DNA topoisomerase IV, subunit B [Escherichia fergusonii ATCC 35469]
          Length = 630

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 245/647 (37%), Positives = 363/647 (56%), Gaps = 26/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R   +++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGNCGKRNTGTSVHFWPD-ETFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL  + ++KA L   V+  +  +    E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G    +      V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LPTLPEKPFIGNFSGETE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A  L E  I  ++ R+R    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFSLWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKHGHVYVAL 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA  EE K+ +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ I+      + T   ++ L+  K +++R  ++QE+    +
Sbjct: 583 TRRLVQLTIDD--EDDQRTDAVMDMLLAKKRSEDRRNWLQEKGDMAE 627


>gi|320195188|gb|EFW69817.1| Topoisomerase IV subunit B [Escherichia coli WV_060327]
          Length = 630

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 246/647 (38%), Positives = 362/647 (55%), Gaps = 26/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R   I++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVNVRRDGQIYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL  + ++KA L   V+  +  +    E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEISFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G           V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A  L E  I  ++ R+R    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA  EE K+ +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ I+      + T   ++ L+  K +++R  ++QE+    +
Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627


>gi|323183615|gb|EFZ69012.1| DNA topoisomerase IV, B subunit [Escherichia coli 1357]
          Length = 630

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 245/647 (37%), Positives = 363/647 (56%), Gaps = 26/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R   +++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL  + ++KA L   V+  +  +    E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G           V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S  +   V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQSAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A  L E  I  ++ R+R    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA  EE K+ +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ I+      + T   ++ L+  K +++R  ++QE+    +
Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627


>gi|309793595|ref|ZP_07688021.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 145-7]
 gi|308122552|gb|EFO59814.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 145-7]
          Length = 630

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 245/647 (37%), Positives = 361/647 (55%), Gaps = 26/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R   +++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL  + ++KA L   V+  +  +    E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G           V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A  L E  I  ++ R+R    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++   Q++ D+
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLATQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA  EE K+ +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ I+      + T   ++ L+  K +++R  ++QE+    +
Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627


>gi|328905793|gb|EGG25569.1| DNA gyrase, B subunit [Propionibacterium sp. P08]
          Length = 681

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 246/662 (37%), Positives = 361/662 (54%), Gaps = 19/662 (2%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
              +   +YDA  I +LEGLE VR RPGMYIG T E+ LHH   E++DN++DE +AGY +
Sbjct: 26  PPMTVDGSYDAGQITVLEGLEAVRKRPGMYIGSTGERGLHHCVYEIVDNSVDEAMAGYCD 85

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I+V L  + +  V DNGRGIPV+ HP   +  T+ ++LT LHAGGKF N  Y++SGGLH
Sbjct: 86  TIQVELLDDNWCQVTDNGRGIPVKEHP-VEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLH 144

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDP 213
           GVG SVVNAL+    V V R    + Q F+ G P  PLE+ E     +  GT + F+P  
Sbjct: 145 GVGSSVVNALAAHFVVEVRRDGYHWRQSFTLGEPDGPLEQLEALGPDDCEGTTVRFQPSD 204

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTY 272
           +IF     F    L    +  A+L+  ++   +  + + A++ G P  E+F +  GLK Y
Sbjct: 205 EIFDAIV-FGYETLSNRFREMAFLNKGLRIVLTDRRADHADEEGNPVHEDFLYKEGLKDY 263

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHE 331
           ++     R +I+  I + ++ +     G +E A+ W       + ++ N I T EGG HE
Sbjct: 264 VRFLTGTRDVINPTIISLESHRPEEGMG-LEIAMQWNTSYTTSVHTFANAINTIEGGAHE 322

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G R ALT  + ++ E      KR   +  DD+      ++S+ + EP+F GQTKTKL +
Sbjct: 323 EGFRAALTNTVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGN 382

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA--IRKL 447
            +A+  V+  L +    +  +NP E   ++      ++ R+  RK R++ R     +   
Sbjct: 383 AEAKSFVQKTLNEKLSDWFEENPNEGKNIVRKSQAAAQARVAARKARDLARNRKGLLGST 442

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKL DCS       E+FIVEGDSAGGSA Q R+   QA+LPLRGKILNV  A  ++ 
Sbjct: 443 SLPGKLKDCSSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRA 502

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             ++ I  ++ ALG      +  + LRY K+I+M DADVDGAHI +LLLT  ++ M  +I
Sbjct: 503 LGSETIESIINALGTGVHEDFDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVI 562

Query: 568 EQKHLFLISPPLFRITQGTKSVY-AHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEM 623
           +  H++L  PPLFR+         A+ +E +  +  +   H K   +   I R+KGLGEM
Sbjct: 563 DAGHVYLAQPPLFRLRWTNSPHELAYSDEERDLLRADGLAHAKKLPQINPIQRYKGLGEM 622

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
            A  L +T MD +KR LL+V +              + LMG   ++R  FIQ  A  +  
Sbjct: 623 DAEDLWDTTMDPDKRLLLQVTLED----AALADQMFSILMGEDVEQRRSFIQRNAKDVRF 678

Query: 684 VG 685
           + 
Sbjct: 679 LD 680


>gi|28897204|ref|NP_796809.1| DNA topoisomerase IV subunit B [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153840089|ref|ZP_01992756.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus AQ3810]
 gi|260363417|ref|ZP_05776267.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus K5030]
 gi|260879174|ref|ZP_05891529.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus AN-5034]
 gi|260898011|ref|ZP_05906507.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus Peru-466]
 gi|260901428|ref|ZP_05909823.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus AQ4037]
 gi|28805413|dbj|BAC58693.1| topoisomerase IV, subunit B [Vibrio parahaemolyticus RIMD 2210633]
 gi|149746309|gb|EDM57374.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus AQ3810]
 gi|308086337|gb|EFO36032.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus Peru-466]
 gi|308094171|gb|EFO43866.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus AN-5034]
 gi|308106489|gb|EFO44029.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus AQ4037]
 gi|308112928|gb|EFO50468.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus K5030]
 gi|328471973|gb|EGF42850.1| DNA topoisomerase IV subunit B [Vibrio parahaemolyticus 10329]
          Length = 626

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 252/645 (39%), Positives = 358/645 (55%), Gaps = 24/645 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A+ ++V 
Sbjct: 2   TEQYNAGAIEVLNGLEPVRRRPGMY---TDTARPNHLGQEVIDNSVDEALAGHASKVQVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+    S +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + VTV R   ++   F  G  +S L       R  RGT + F PD K F   
Sbjct: 118 VVNALSKRVEVTVRRDGQVYEIAFEHGDKVSDLTVTGTCGRRNRGTSVHFWPDAKYFDSA 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F   RL+   ++KA L   ++  ++            +  ++Y+  GLK YL   ++ 
Sbjct: 178 N-FSVTRLVNNLRAKAVLCPGLEITFTDK-------VNNKDYQWYYEDGLKDYLAEGVKG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
             ++  E FTG+                         SY N I T +GGTH +GLR  L 
Sbjct: 230 YPVLPEEPFTGEFSADTEA-ANWAVIWQPEGGEMITESYVNLIPTAQGGTHVNGLRQGLL 288

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R + +  DD+      +LSV I++P+FAGQTK +L S      V  
Sbjct: 289 DAMREFCEFRNLLPRGVKLTGDDVFDRCSYVLSVKIQDPQFAGQTKERLSSRQTAAFVSG 348

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L + P  A +L E  I  +  R+R    ++V RK       LPGKL DCS 
Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEVCIANAHRRMR--ASKKVVRKKVASGPALPGKLTDCSV 406

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
              + TE+F VEGDSAGGSAKQAR+R  QAV+PLRGKILN     ++++  +Q++ D+  
Sbjct: 407 QDLNRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG    S    + LRY K+ I+ DAD DG HIA+LL   F +    L+E  H+++  PP
Sbjct: 467 ALGIDPDSDNL-DSLRYGKICILADADSDGLHIATLLCALFTRHFRALVEAGHIYVAMPP 525

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+RI  G +  YA D++ K  ILE   K  K KI + RFKGLGEM   QL+ET MD N R
Sbjct: 526 LYRIDCGKEVFYALDDDEKDGILERLSKK-KAKINVQRFKGLGEMNPIQLRETTMDPNTR 584

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            L+++ I+      + T + ++ L+G K AD+R  ++Q      +
Sbjct: 585 RLVQLTIDD----SEATMEMMDMLLGKKRADDRRSWLQNNGDLAE 625


>gi|323978898|gb|EGB73978.1| DNA topoisomerase IV [Escherichia coli TW10509]
          Length = 630

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 246/647 (38%), Positives = 362/647 (55%), Gaps = 26/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R   I++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVNVRRDGQIYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-EAFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL  + ++KA L   V+  +  +    E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G           V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A  L E  I  ++ R+R    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA  EE K+ +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ I+      + T   ++ L+  K +++R  ++QE+    +
Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627


>gi|254038199|ref|ZP_04872257.1| DNA topoisomerase IV subunit B [Escherichia sp. 1_1_43]
 gi|300818795|ref|ZP_07099001.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 107-1]
 gi|226839823|gb|EEH71844.1| DNA topoisomerase IV subunit B [Escherichia sp. 1_1_43]
 gi|300528580|gb|EFK49642.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 107-1]
          Length = 630

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 245/647 (37%), Positives = 361/647 (55%), Gaps = 26/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R   +++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL  + ++KA L   V+  +  +    E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G           V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A  L E  I  ++ R+R    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++   Q++ D+
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLAAQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA  EE K+ +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ I+      + T   ++ L+  K +++R  ++QE+    +
Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627


>gi|327456322|gb|EGF02977.1| DNA gyrase, B subunit [Propionibacterium acnes HL083PA2]
          Length = 685

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 251/662 (37%), Positives = 366/662 (55%), Gaps = 19/662 (2%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
              +   +YDA  I +LEGLE VR RPGMYIG T E+ LHH   E++DN++DE +AGY +
Sbjct: 30  PPTAVDGSYDAGQITVLEGLEAVRKRPGMYIGSTGERGLHHCVYEIVDNSVDEAMAGYCD 89

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I+V L  + +  V DNGRGIPV+ HP   +  T+ ++LT LHAGGKF N  Y++SGGLH
Sbjct: 90  TIQVELLDDNWCQVTDNGRGIPVKEHP-VEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLH 148

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDP 213
           GVG SVVNAL+    V V R    + Q FS G P  PLE+ E     +  GT + F+P  
Sbjct: 149 GVGSSVVNALAAHFIVEVRRDGYHWLQSFSLGEPDGPLEQFEALGPDDHEGTTVRFQPSD 208

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTY 272
           +IF     FD   L    +  A+L+  ++   +  + + A++ G P  E+F +  GLK Y
Sbjct: 209 EIFDAIV-FDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDY 267

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++     R +I+  I + ++ +     G +E A+ W       + ++ N I T EGG HE
Sbjct: 268 VRFLTGTRDVINPTIISLESHRPEEGMG-LEIAMQWNTSYATSVHTFANAINTIEGGAHE 326

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G R ALT  + ++ E      KR   +  DD+      ++S+ + EP+F GQTKTKL +
Sbjct: 327 EGFRAALTNTVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGN 386

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA--IRKL 447
            +A+  V+ AL +    +  +NP E   ++      ++ R+  RK R++ R     +   
Sbjct: 387 AEAKSFVQKALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARNRKGLLGST 446

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKL DCS   +   E+FIVEGDSAGGSA Q R+   QA+LPLRGKILNV  A  ++ 
Sbjct: 447 SLPGKLKDCSSTSSEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRA 506

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             ++ I  ++ ALG      +  + LRY K+I+M DADVDGAHI +LLLT  ++ M  +I
Sbjct: 507 LGSETIESIINALGTGVHEDFDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVI 566

Query: 568 EQKHLFLISPPLFRITQGTKSVY-AHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEM 623
           +  H++L  PPLFR+         A+ +E +  + E+   HGK   +   I R+KGLGEM
Sbjct: 567 DAGHVYLAQPPLFRLRWTNSPHELAYSDEERDLLREDGLTHGKKLPQVNPIQRYKGLGEM 626

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
            A  L +T MD +KR LL+V +              + LMG   ++R  FIQ  A  +  
Sbjct: 627 DAEDLWDTTMDPDKRLLLQVTLED----AALADQMFSILMGEDVEQRRSFIQRNAKDVRF 682

Query: 684 VG 685
           + 
Sbjct: 683 LD 684


>gi|170765612|ref|ZP_02900423.1| DNA topoisomerase IV, B subunit [Escherichia albertii TW07627]
 gi|170124758|gb|EDS93689.1| DNA topoisomerase IV, B subunit [Escherichia albertii TW07627]
          Length = 630

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 247/647 (38%), Positives = 363/647 (56%), Gaps = 26/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R   I++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVNVRRDGQIYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL  + ++KA L   V+  +  +    E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G    +      V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LPTLPEKPFIGNFNGETE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A  L E  I  ++ R+R    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFTLWLNQNVQAAELLAEMAIASAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKHGHVYVAL 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA  EE K+ +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ I+      + T   ++ L+  K A++R  ++QE+    +
Sbjct: 583 TRRLVQLTISD--EDDQRTDAVMDMLLAKKRAEDRRNWLQEKGDMAE 627


>gi|194431743|ref|ZP_03064034.1| DNA topoisomerase IV, B subunit [Shigella dysenteriae 1012]
 gi|194420099|gb|EDX36177.1| DNA topoisomerase IV, B subunit [Shigella dysenteriae 1012]
 gi|320180944|gb|EFW55865.1| Topoisomerase IV subunit B [Shigella boydii ATCC 9905]
 gi|332086688|gb|EGI91828.1| DNA topoisomerase IV, B subunit [Shigella boydii 5216-82]
 gi|332087296|gb|EGI92426.1| DNA topoisomerase IV, B subunit [Shigella dysenteriae 155-74]
          Length = 630

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 245/647 (37%), Positives = 362/647 (55%), Gaps = 26/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R   +++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL  + ++KA L   V+  +  +    E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G           V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A  L E  I  ++ R+R    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA  EE K+ +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKANVQRFKGLGEMNPMQLRETTLDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ I+      + T   ++ L+  K +++R  ++QE+    +
Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627


>gi|311742665|ref|ZP_07716474.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Aeromicrobium
           marinum DSM 15272]
 gi|311314293|gb|EFQ84201.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Aeromicrobium
           marinum DSM 15272]
          Length = 690

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 227/699 (32%), Positives = 340/699 (48%), Gaps = 44/699 (6%)

Query: 22  KLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEV 81
               +  +        +     YDA ++ +LEGLE VR RPGMYIG TD + L H   E+
Sbjct: 2   NSAAADRLGGPAGPPQEDPISTYDARNLLVLEGLEAVRKRPGMYIGSTDTRGLMHCVWEI 61

Query: 82  IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141
           IDNA+DE + G+ + I V L  +G + V D+GRGIPV+   K    + +E++ T LHAGG
Sbjct: 62  IDNAVDEALGGHCHHIRVVLHADGSVEVHDDGRGIPVDTERK-TGLTGVEVVFTKLHAGG 120

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-R 200
           KF   +Y  +GGLHGVG SVVNALS+ L V V +    ++  F+RG P  PL K  KV +
Sbjct: 121 KFGGGSYVATGGLHGVGASVVNALSERLEVEVDKGGATWAMAFTRGAPEGPLTKIGKVAK 180

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
            + GTRI +  DP+IF   A F    L+  ++  ++L   ++     ++          +
Sbjct: 181 TRTGTRIRYWADPQIFIKGAEFSYTDLVTRSRQTSFLVPGLEIVIRDER-----TDEVRE 235

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTVEW 304
           E F   GG+  + +    +  +       G+                  +       V+ 
Sbjct: 236 ETFLHSGGIAEFTEFLATDEPVTPVLRLQGEDTFTETVPVLDELGHMSPQDVERSLGVDV 295

Query: 305 AIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDD 361
           A+ W         S+ N I T +GGTH  G    +TR      + T+  +     +  DD
Sbjct: 296 ALRWGTGYETDVRSFVNIISTPKGGTHVQGFERGMTRTFNDVLKTTRLLKSGDQDVTKDD 355

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL--- 418
           ++     +++V + EP+F GQTK  L +    + V   +      +L             
Sbjct: 356 VLEGLTAVVTVRLAEPQFEGQTKEVLGTPAVTKIVNQVVSRELKTFLASTKAADKAKARL 415

Query: 419 -LEWVIERSEER-LRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
            +E V+  S+ R + R+++    RK A+    LP KLADC       +ELFIVEGDSA G
Sbjct: 416 VMEKVVAASKTRLMARQQRDTQRRKNALESSALPAKLADCRSGDVDRSELFIVEGDSALG 475

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           +AK AR+   QA+LP+RGKILNV  A    +  N +   ++Q +G  +   +  +  RY 
Sbjct: 476 TAKSARDSGFQALLPVRGKILNVQKASIGDMLKNAECSSIIQVVGAGSGRTFDLDAARYG 535

Query: 537 KVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-----TQGT-KSVY 590
           ++I M DAD DGAHI  LL T F++ M  L+E   ++   PPL RI      +G  K VY
Sbjct: 536 RIIFMADADSDGAHIRCLLATLFFRYMRPLVEAGRVYTAVPPLHRIELSAPKKGQDKYVY 595

Query: 591 AHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDL 649
            + +   Q+ L +  K G + K  + R+KGLGEM A QL ET MD   RTL R+ ++   
Sbjct: 596 TYSDAELQRTLAQLTKKGARWKDPVQRYKGLGEMDADQLAETTMDPRHRTLRRLTVDD-- 653

Query: 650 NSLKDTQDSINKLMGTKADERFKFIQERAS--FIDDVGT 686
              ++       LMG +   R +FI + A     D +  
Sbjct: 654 --AEEASAVFELLMGNEVAPRKEFIVQGAYDFDADRIDA 690


>gi|28569047|gb|AAO47227.1|AF205854_1 DNA gyrase subunit B [Streptomyces caeruleus]
          Length = 677

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 242/679 (35%), Positives = 357/679 (52%), Gaps = 23/679 (3%)

Query: 23  LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82
             ++      P    Q  + +YDA +I +L+GL+ VR RPGMYIG T E+ LHHL  E++
Sbjct: 5   DTRTATDTPGPQLPGQVGTASYDADAITVLDGLDAVRKRPGMYIGSTGERGLHHLVQELV 64

Query: 83  DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142
           DN++DE +AG A+ I+V++  +G + VVDNGRGIPV  HP    +  +E++LT LHAGGK
Sbjct: 65  DNSVDEALAGVADRIDVTVLADGGVRVVDNGRGIPVGMHP-VEKRPAVEVVLTVLHAGGK 123

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           F    Y +SGGLHGVG+SVVNALS  L   +      ++Q +  G P +PL ++E     
Sbjct: 124 FGGGGYTVSGGLHGVGLSVVNALSARLSAEIWTDGHRWTQDYRDGAPTAPLVRREATSR- 182

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD---------KEIAE 253
            GT +TF  D  IF     +    L +  Q  A+L+  +    + +          +   
Sbjct: 183 TGTSLTFWADGSIFET-TDYSFETLARRFQEMAFLNRGLTLTLTDERASARATAATDEVH 241

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP 313
                +   + + GG+  ++      +                    + E A+ W  +  
Sbjct: 242 PDPAAKTVSYRYDGGITDFVAYLNSRKGEPVHPSVVTIAADDTERLLSAEIALQWNGQYT 301

Query: 314 E-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGIL 370
           + + SY N I T EGGTHE G R ALT  + +YA   +   ++  ++  +D+      I+
Sbjct: 302 DSVYSYANAIHTHEGGTHEEGFRTALTTVVNRYARDKKLLREKDANLAGEDIREGLTAII 361

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV +REP+F GQTKTKL + + +  V+  + +    +  +NP EA  ++   ++ +  R+
Sbjct: 362 SVKLREPQFEGQTKTKLGNTEVRTFVQKVVHEHLTDWFDRNPNEAADIVRKAVQAATARV 421

Query: 431 RRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK R++ R+   +    LPGKL+DC  N    +E+FIVEGDSAGGSAK  RN   QA+
Sbjct: 422 AARKARDLTRRKGLLETASLPGKLSDCQSNDPAMSEIFIVEGDSAGGSAKSGRNPQYQAI 481

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549
           LP+RGKILNV  A  ++I  NQ+I  L+ A G      +    LRY KVI+M DADVDG 
Sbjct: 482 LPIRGKILNVEKARIDRILQNQEIQALISAFGTGMHEDFDIAKLRYHKVILMADADVDGQ 541

Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTK-SVYAHDEEHKQKILE--EFKK 606
           HI +LLLT  ++ M  LIE+ H++L  PPL++I        YA+ +  +  +LE      
Sbjct: 542 HINTLLLTVLFRFMRPLIEEGHVYLSRPPLYKIKWSRDHVEYAYSDRERDTLLELGRRDG 601

Query: 607 HGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK 666
                  I RFKGLGEM A +L+ T MD + R L R      L+      D  + LMG  
Sbjct: 602 RRVRDDSIQRFKGLGEMNAEELRVTTMDPDHRVLGR----VALDDAAVADDLFSVLMGED 657

Query: 667 ADERFKFIQERASFIDDVG 685
            + R  FIQ  A  +  + 
Sbjct: 658 VEARRHFIQRNAKDVRFLD 676


>gi|134096626|ref|YP_001102287.1| DNA gyrase subunit B [Saccharopolyspora erythraea NRRL 2338]
 gi|291005720|ref|ZP_06563693.1| DNA gyrase subunit B [Saccharopolyspora erythraea NRRL 2338]
 gi|133909249|emb|CAL99361.1| DNA gyrase subunit B [Saccharopolyspora erythraea NRRL 2338]
          Length = 630

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 237/639 (37%), Positives = 353/639 (55%), Gaps = 27/639 (4%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIG T E+ LHHL  EV+DN++DE +AGYA  +EV+L  +G + VVD+GRGIPV+ HP 
Sbjct: 1   MYIGSTGERGLHHLVQEVVDNSVDEAMAGYATRVEVTLLADGGVRVVDDGRGIPVDMHP- 59

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
              K TLE++LT LHAGGKF   +Y +SGGLHGVG+SVVNALS  L   +     ++ Q+
Sbjct: 60  VEKKPTLEVVLTVLHAGGKFGGDSYAVSGGLHGVGVSVVNALSTALEAEIHLHGHVWRQR 119

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           +    P+  L+K  +   + GT ITF  DP IF     ++A  + +  Q  A+L+  +  
Sbjct: 120 YEDSKPVHDLQK-GERTTRTGTTITFWADPTIFETTR-YNAETISRRLQEMAFLNKGLTI 177

Query: 244 CWSCDKEIAEKYGIPEKE---------EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
               ++   E  G  +            F++PGGL+ +++     +  I  ++ +     
Sbjct: 178 VLRDERAAEEHEGGEDASGAAARATERTFHYPGGLEDFVRHINATKEPIHKKVVSFSASG 237

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR 353
           KG     +E A+ W       + ++ NTI T EGGTHE G R ALTR +  YA+  +  +
Sbjct: 238 KGH---ELEVAMQWNSGYNQSVYTFANTINTHEGGTHEEGFRSALTRVVNAYAKDKKLLK 294

Query: 354 AI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
               S+  DD+      I+SV + EP+F GQTKTKL + + +  V+    +    +  +N
Sbjct: 295 DKDGSLTGDDVREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQTNAFEWLTDWFERN 354

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P EA  ++   +  ++ R+  R+ +E V RK+A+    LPGKL DC  N     EL+IVE
Sbjct: 355 PTEAKTIVNKAVSSAQARVAARRAKELVRRKSAMDIGGLPGKLKDCQSNQPDECELYIVE 414

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530
           GDSAGGSAK+ R    QA+LP+RGKI+NV  A  +K+  N ++  ++ ALG     ++  
Sbjct: 415 GDSAGGSAKEGRESRFQAILPIRGKIINVEKARIDKVLKNNEVQSIITALGTGIHDEFDL 474

Query: 531 EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSV 589
             LRY K+++M DADVDG HI +LL+T  ++ M  LIE  H+FL  PPL++I     +  
Sbjct: 475 SKLRYHKIVLMADADVDGKHIQTLLMTLLFRFMRPLIEHGHVFLARPPLYKIKWPRSEPE 534

Query: 590 YAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646
           YA+ ++ +  +LE     GK   +   I R+KGLGEM A +L ET MD   R L++V ++
Sbjct: 535 YAYSDKERDALLEAGASAGKKLPKEDGIQRYKGLGEMNADELWETTMDPATRLLMQVTLD 594

Query: 647 KDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
                     +  + LMG   + R  FI   A     + 
Sbjct: 595 D----AATADELFSVLMGEDVEARRSFITRNAKDAGLLD 629


>gi|86148731|ref|ZP_01067006.1| DNA topoisomerase IV subunit B [Vibrio sp. MED222]
 gi|85833480|gb|EAQ51663.1| DNA topoisomerase IV subunit B [Vibrio sp. MED222]
          Length = 626

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 242/645 (37%), Positives = 357/645 (55%), Gaps = 24/645 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y+A  + +LEGL+PVR RPGMY   T+ +  +HL  EVIDN++DE +AG+A  I+V 
Sbjct: 2   TEQYNAKDLEVLEGLDPVRHRPGMY---TETERPNHLAQEVIDNSVDEALAGHAKKIKVV 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V D+GRG+PV+ HP+    S +E+ILT LH+GGKF N+ Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVTDDGRGMPVDIHPE-KGISGVELILTKLHSGGKFSNNNYKFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDK 219
           VVNALS  + VTV R   +       G  ++ L       +   GT + F PDPK F   
Sbjct: 118 VVNALSKRVEVTVRRDGQVHEIALEGGHAVTDLTVTGTCGHRNTGTTVHFWPDPKYFDSS 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F   RL+   ++KA L   ++  +       E        ++++  GLK YL   ++ 
Sbjct: 178 -KFSVLRLINNLRAKAVLCPGLEITFVDKVGGEE-------HKWFYEDGLKDYLAEGVKG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
            +L+  E + G+   +                +    SY N + T +GGTH +GLR  L 
Sbjct: 230 YTLLPEEPYVGEFVAETEM-ANWAIIWQPEGGDMITESYVNLVPTKQGGTHVNGLRQGLL 288

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R + +  DD+      +LSV +++P+FAGQTK +L S      V  
Sbjct: 289 DAMREFCEFRNLLPRGVKLTGDDIFDRCSYVLSVKMQDPQFAGQTKERLSSRQTAAFVSG 348

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L + P  A +L E  I  +  R+R    ++V RK       LPGKL DCS 
Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEACIANAHRRMR--ASKKVVRKKIASGPALPGKLTDCSV 406

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TE+F VEGDSAGGSAKQAR+R  QAV+PLRGKILN     ++++  +Q++ D+  
Sbjct: 407 QDLSRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG    +      LRY K+ I+ DAD DG HIA+LL   F +  + L+E  H+++  PP
Sbjct: 467 ALGIDPDNDDL-SGLRYGKICILADADSDGLHIATLLCALFTRHFHALVEAGHIYVAMPP 525

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+RI  G +  YA D+  K  +LE   +  K KI + RFKGLGEM   QL+ET MD N R
Sbjct: 526 LYRIDCGKEVFYALDDAEKDGVLERLSQK-KAKINVQRFKGLGEMNPLQLRETTMDPNTR 584

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            L+++ I+ +    + T + ++ L+G K AD+R  ++Q      +
Sbjct: 585 RLVQLTIDDN----EATNEMMDMLLGKKRADDRRTWLQTNGDMAE 625


>gi|323966559|gb|EGB61992.1| DNA topoisomerase IV [Escherichia coli M863]
 gi|327251816|gb|EGE63502.1| DNA topoisomerase IV, B subunit [Escherichia coli STEC_7v]
          Length = 630

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 246/647 (38%), Positives = 362/647 (55%), Gaps = 26/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R   I++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVNVRRDGQIYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-EAFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL  + ++KA L   V+  +  +    E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G           V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A  L E  I  ++ R+R    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFTLWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA  EE K+ +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ I+      + T   ++ L+  K +++R  ++QE+    +
Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627


>gi|157148595|ref|YP_001455914.1| DNA topoisomerase IV subunit B [Citrobacter koseri ATCC BAA-895]
 gi|157085800|gb|ABV15478.1| hypothetical protein CKO_04422 [Citrobacter koseri ATCC BAA-895]
          Length = 630

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 249/651 (38%), Positives = 364/651 (55%), Gaps = 27/651 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + VTV R   ++S  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVTVRRDAQVYSIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL  + ++KA L   V+  +  +   +E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLTHILKAKAVLCPGVEITFKDEVNNSE-------QRWCYQDGLNDYLGEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G           V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A  L E  I  ++ RLR    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFSLWLNQNVQSAELLAEMAISSAQRRLR--AAKKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKHGHVYVAL 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA  EE K  +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 524 PPLYRIDLGKEVYYALTEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDVGT 686
            R L+++ I+      + T   ++ L+  K +++R  ++QE+    D +  
Sbjct: 583 TRRLVQLTISD--EDDQRTNAMMDMLLAKKRSEDRRNWLQEKGDMAD-LDA 630


>gi|281180082|dbj|BAI56412.1| DNA topoisomerase IV subunit B [Escherichia coli SE15]
          Length = 630

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 245/647 (37%), Positives = 362/647 (55%), Gaps = 26/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R   I++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVNVRRDGQIYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL  + ++KA L   V+  +  +    E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G           V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A  L E  I  ++ R+R    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+R+  G +  YA  EE K+ +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 524 PPLYRLDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ I+      + T   ++ L+  K +++R  ++QE+    +
Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627


>gi|218708460|ref|YP_002416081.1| DNA topoisomerase IV subunit B [Vibrio splendidus LGP32]
 gi|218321479|emb|CAV17431.1| Topoisomerase IV subunit B [Vibrio splendidus LGP32]
          Length = 626

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 242/645 (37%), Positives = 357/645 (55%), Gaps = 24/645 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y+A  + +LEGL+PVR RPGMY   T+ +  +HL  EVIDN++DE +AG+A  I+V 
Sbjct: 2   TEQYNAKDLEVLEGLDPVRHRPGMY---TETERPNHLAQEVIDNSVDEALAGHAKKIKVV 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V D+GRG+PV+ HP+    S +E+ILT LH+GGKF N+ Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVTDDGRGMPVDIHPE-KGISGVELILTKLHSGGKFSNNNYKFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDK 219
           VVNALS  + VTV R   +       G  ++ L       +   GT + F PDPK F   
Sbjct: 118 VVNALSKRVEVTVRRDGQVHEIALEGGHAVTDLTVTGTCGHRNTGTTVHFWPDPKYFDSS 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F   RL+   ++KA L   ++  +       E        ++++  GLK YL   ++ 
Sbjct: 178 -KFSTLRLINNLRAKAVLCPGLEITFVDKVGGEE-------HKWFYEDGLKDYLAEGVKG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
            +L+  E + G+   +                +    SY N + T +GGTH +GLR  L 
Sbjct: 230 YTLLPEEPYVGEFVAETEM-ANWAIIWQPEGGDMITESYVNLVPTKQGGTHVNGLRQGLL 288

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R + +  DD+      +LSV +++P+FAGQTK +L S      V  
Sbjct: 289 DAMREFCEFRNLLPRGVKLTGDDIFDRCSYVLSVKMQDPQFAGQTKERLSSRQTAAFVSG 348

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L + P  A +L E  I  +  R+R    ++V RK       LPGKL DCS 
Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEACIANAHRRMR--ASKKVVRKKIASGPALPGKLTDCSV 406

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TE+F VEGDSAGGSAKQAR+R  QAV+PLRGKILN     ++++  +Q++ D+  
Sbjct: 407 QDLSRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG    +      LRY K+ I+ DAD DG HIA+LL   F +  + L+E  H+++  PP
Sbjct: 467 ALGIDPDNDDL-SGLRYGKICILADADSDGLHIATLLCALFTRHFHALVEAGHIYVAMPP 525

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+RI  G +  YA D+  K  +LE   +  K KI + RFKGLGEM   QL+ET MD N R
Sbjct: 526 LYRIDCGKEVFYALDDAEKDGVLERLSQK-KAKINVQRFKGLGEMNPLQLRETTMDPNTR 584

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            L+++ I+ +    + T + ++ L+G K AD+R  ++Q      +
Sbjct: 585 RLVQLTIDDN----EATNEMMDMLLGKKRADDRRTWLQTNGDMAE 625


>gi|149177758|ref|ZP_01856358.1| DNA gyrase subunit B [Planctomyces maris DSM 8797]
 gi|148843408|gb|EDL57771.1| DNA gyrase subunit B [Planctomyces maris DSM 8797]
          Length = 643

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 265/658 (40%), Positives = 375/658 (56%), Gaps = 22/658 (3%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
              A  + +  Y A  I +LEGLE VR RP MYIGG D + LHHL  E++DN++DE +A 
Sbjct: 2   ATAAKTTGAKKYSADDIEVLEGLEAVRRRPSMYIGGVDIRGLHHLLWEIVDNSVDEYLAK 61

Query: 93  YANLIEVSLDGNG-FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
            A+ I V+L  +G   +V DNGRGIPV+ H K   KS LE+ILTTLHAGGKF +  Y  S
Sbjct: 62  EADTIIVTLHKDGASCSVKDNGRGIPVDKHSK-TKKSALELILTTLHAGGKFSDKNYARS 120

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG SVVNALS E+  TV R    + Q++ +G P +P++K +  R   GT I FRP
Sbjct: 121 GGLHGVGSSVVNALSTEMVATVVRDGHQYVQRYKKGKPTTPVKKVKPFRGH-GTEIYFRP 179

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           D  IF     F+A  + +  +  A++ G +K  +  +          E  E   P G++ 
Sbjct: 180 DDDIFRRVH-FNADTIRQHLEDVAFIHGGLKITFRDE-------VKKETHELSHPEGIRG 231

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTH 330
           YL+   + +            EK+      VE  + W +  + +I SY N I T  GGTH
Sbjct: 232 YLEKLTQEQQKKPVHEQLFFAEKED-KNIRVEMVLRWTDATDEQIRSYVNGIRTHAGGTH 290

Query: 331 ESGLRVALTRGIKKYAELTQNK-RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           ESGLR  + + +K Y ++   K + ++I +DD+    + ++SVF  +P F GQTK KL +
Sbjct: 291 ESGLRSGIAKAVKNYMDVHNIKHKGLAITTDDIREGVLCLISVFHNDPMFQGQTKEKLNN 350

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKL 447
            +    VE  +R   + +L QNP  A  ++  ++  +  R+  R  ++  R+ ++  RK 
Sbjct: 351 PEVSGFVEGIVRPLLETWLNQNPSIADAVVGRIVLAARARMASRDAQKEVRRKSVTNRKS 410

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKL DC  N    +ELF+VEG SAGG+A   R+   QAVLPLRGK+LN  S    KI
Sbjct: 411 TLPGKLLDCRSNKPEESELFLVEGLSAGGTAAMGRDSRIQAVLPLRGKVLNTESLAISKI 470

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             NQ+I DLV+ LG      +   +LRY ++I++ DAD DG HI++LLLTFF++ M +LI
Sbjct: 471 MGNQEIKDLVETLGTGIGPNFEIMNLRYNRIILLMDADSDGYHISTLLLTFFFRHMRELI 530

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
            Q  LFL  PPL+ I  G +  YA D+  K++I+E    +   K EI RFKGLGEM AS+
Sbjct: 531 RQGKLFLAQPPLYCIKVGNEKHYAQDDAQKEEIVESLGAN--RKYEIGRFKGLGEMTASE 588

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           LKET +D   R LL+V+I+  L    +   +  +L G  A  R+  I + A   DD+ 
Sbjct: 589 LKETTLDPKHRVLLKVDIDSQL----EADATFAQLFGKDASLRYDLIMQEAIEADDID 642


>gi|314982912|gb|EFT27004.1| DNA gyrase, B subunit [Propionibacterium acnes HL110PA3]
 gi|315091218|gb|EFT63194.1| DNA gyrase, B subunit [Propionibacterium acnes HL110PA4]
 gi|315105172|gb|EFT77148.1| DNA gyrase, B subunit [Propionibacterium acnes HL050PA2]
          Length = 685

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 250/662 (37%), Positives = 364/662 (54%), Gaps = 19/662 (2%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
              +   +YDA  I +LEGLE VR RPGMYIG T E+ LHH   E++DN++DE +AGY +
Sbjct: 30  PPTTVDGSYDAGQITVLEGLEAVRKRPGMYIGSTGERGLHHCVYEIVDNSVDEAMAGYCD 89

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I+V L  + +  V DNGRGIPV+ HP   +  T+ ++LT LHAGGKF N  Y++SGGLH
Sbjct: 90  TIQVELLDDNWCQVTDNGRGIPVKEHP-VEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLH 148

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDP 213
           GVG SVVNAL+    V V R    + Q FS G P  PLE+ E     +  GT + F+P  
Sbjct: 149 GVGSSVVNALAAHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDHEGTTVRFQPSD 208

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTY 272
           +IF     FD   L    +  A+L+  ++   +  + + A++ G P  E+F +  GLK Y
Sbjct: 209 EIFDAIV-FDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDY 267

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++     R +I+  I + ++ +     G +E A+ W       + ++ N I T EGG HE
Sbjct: 268 VRFLTGTRDVINPTIISLESHRPEEGMG-LEIAMQWNTSYATSVHTFANAINTIEGGAHE 326

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G R ALT  + ++ E      KR   +  DD+      ++S+ + EP+F GQTKTKL +
Sbjct: 327 EGFRAALTNTVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGN 386

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA--IRKL 447
            +A+  V+ AL +    +  +NP E   ++      ++ R+  RK R++ R     +   
Sbjct: 387 AEAKSFVQKALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARSRKGLLGST 446

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKL DCS       E+FIVEGDSAGGSA Q R+   QA+LPLRGKILNV  A  ++ 
Sbjct: 447 SLPGKLKDCSSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRA 506

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             ++ I  ++ ALG      +  + LRY K+I+M DADVDGAHI +LLLT  ++ M  +I
Sbjct: 507 LGSETIESIINALGTGVHEDFDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVI 566

Query: 568 EQKHLFLISPPLFRITQGTKSVY-AHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEM 623
           +  H++L  PPLFR+         A+ +E +  +  +   HGK   +   I R+KGLGEM
Sbjct: 567 DAGHVYLAQPPLFRLRWTNSPHELAYSDEERDLLRGDGLTHGKKLPQVNPIQRYKGLGEM 626

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
            A  L +T MD +KR LL+V +              + LMG   ++R  FIQ  A  +  
Sbjct: 627 DAEDLWDTTMDPDKRLLLQVTLED----AALADQMFSILMGEDVEQRRSFIQRNAKDVRF 682

Query: 684 VG 685
           + 
Sbjct: 683 LD 684


>gi|185179126|ref|ZP_02964846.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188024055|ref|ZP_02996806.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188518297|ref|ZP_03003818.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|225550687|ref|ZP_03771636.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
 gi|225551068|ref|ZP_03772014.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|184208963|gb|EDU06006.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188019091|gb|EDU57131.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188998169|gb|EDU67266.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|225378883|gb|EEH01248.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|225379841|gb|EEH02203.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
          Length = 642

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 247/655 (37%), Positives = 353/655 (53%), Gaps = 33/655 (5%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ YD ++I+ILEGLE VR RPGMYIG T    LHHL  E++DN++DEV+   A  I V 
Sbjct: 2   ANKYDGNAIKILEGLEAVRKRPGMYIGSTSSAGLHHLVWEIVDNSIDEVMNANAKNINVI 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  ++V+D+GRGIPV+ + +    ST+E +LT LHAGGKFD S Y+ +GGLHGVG S
Sbjct: 62  LHEDNSISVLDDGRGIPVDINSQ-TKISTVETVLTILHAGGKFDESAYKTAGGLHGVGSS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  L   V R   I+  KF  G  +    K      K GT I F PDP IF +  
Sbjct: 121 VVNALSSWLICEVYRDQKIYQAKFINGGHIHQSLKVIGTTKKTGTLIHFLPDPLIFKNLV 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F+   + +      +L   +K  +       E     +K EF    GL  +++   E +
Sbjct: 181 -FNPNIIKERLHESTFLIKDLKIIF-------EDKINKKKYEFINNQGLIDFIKFINETK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
              S  I+     K   ++  VE A  + ++N   + S+ N++ T EGG HE+  + ALT
Sbjct: 233 KTFSDVIYF----KSNINKIDVEIAFQYSDQNNEIMVSFANSVKTSEGGVHENAFKNALT 288

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395
             +  YA       ++  ++  DD+      ++S+ I E    + GQTK KL + +A   
Sbjct: 289 NVVNNYARKHNLLKEKDKNLEGDDIREGLSSVISLRIPESLISYEGQTKNKLFTPEANEA 348

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK--LRLPGKL 453
           V+  + D F  +L +N  +A  L+   I   + +L  ++ RE  +K    K    + GKL
Sbjct: 349 VKKTIEDNFSFWLEENKTQALDLVNRAILARDAKLAAKRAREETKKVKKIKEERGMGGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      ELF+VEGDSAGGSAK  RN+  QA+LPLRGK+LNV  A    +  N++I
Sbjct: 409 TPAQSKDPTLNELFLVEGDSAGGSAKLGRNKKYQAILPLRGKVLNVLKARLVDVLKNEEI 468

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             +   LG    +++  + L+Y K+IIMTDAD DG+HI  LLLT FY+ M  LIE  +++
Sbjct: 469 ASIFTCLGTGIGAEFDLKKLKYHKIIIMTDADTDGSHIQVLLLTLFYRFMRPLIENGNIY 528

Query: 574 LISPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +  PPL+++T     K  YA D+    ++ +E K       EI R+KGLGEM A QL ET
Sbjct: 529 IALPPLYKLTNKNNKKFFYAWDDVELDQLKKEQKN-----YEIQRYKGLGEMNADQLFET 583

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF--IDDV 684
            MD +KR LLRV IN  L      +  IN LMG     R ++I     F  ID++
Sbjct: 584 TMDPSKRLLLRVNINDIL----QAERQINTLMGNDVSIRRQWIDNNIDFSVIDEL 634


>gi|282853046|ref|ZP_06262383.1| DNA gyrase, B subunit [Propionibacterium acnes J139]
 gi|282582499|gb|EFB87879.1| DNA gyrase, B subunit [Propionibacterium acnes J139]
          Length = 690

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 250/662 (37%), Positives = 364/662 (54%), Gaps = 19/662 (2%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
              +   +YDA  I +LEGLE VR RPGMYIG T E+ LHH   E++DN++DE +AGY +
Sbjct: 35  PPTTVDGSYDAGQITVLEGLEAVRKRPGMYIGSTGERGLHHCVYEIVDNSVDEAMAGYCD 94

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I+V L  + +  V DNGRGIPV+ HP   +  T+ ++LT LHAGGKF N  Y++SGGLH
Sbjct: 95  TIQVELLDDNWCQVTDNGRGIPVKEHP-VEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLH 153

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDP 213
           GVG SVVNAL+    V V R    + Q FS G P  PLE+ E     +  GT + F+P  
Sbjct: 154 GVGSSVVNALAAHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDHEGTTVRFQPSD 213

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTY 272
           +IF     FD   L    +  A+L+  ++   +  + + A++ G P  E+F +  GLK Y
Sbjct: 214 EIFDAIV-FDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDY 272

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++     R +I+  I + ++ +     G +E A+ W       + ++ N I T EGG HE
Sbjct: 273 VRFLTGTRDVINPTIISLESHRPEEGMG-LEIAMQWNTSYATSVHTFANAINTIEGGAHE 331

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G R ALT  + ++ E      KR   +  DD+      ++S+ + EP+F GQTKTKL +
Sbjct: 332 EGFRAALTNTVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGN 391

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA--IRKL 447
            +A+  V+ AL +    +  +NP E   ++      ++ R+  RK R++ R     +   
Sbjct: 392 AEAKSFVQKALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARSRKGLLGST 451

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKL DCS       E+FIVEGDSAGGSA Q R+   QA+LPLRGKILNV  A  ++ 
Sbjct: 452 SLPGKLKDCSSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRA 511

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             ++ I  ++ ALG      +  + LRY K+I+M DADVDGAHI +LLLT  ++ M  +I
Sbjct: 512 LGSETIESIINALGTGVHEDFDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVI 571

Query: 568 EQKHLFLISPPLFRITQGTKSVY-AHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEM 623
           +  H++L  PPLFR+         A+ +E +  +  +   HGK   +   I R+KGLGEM
Sbjct: 572 DAGHVYLAQPPLFRLRWTNSPHELAYSDEERDLLRGDGLTHGKKLPQVNPIQRYKGLGEM 631

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
            A  L +T MD +KR LL+V +              + LMG   ++R  FIQ  A  +  
Sbjct: 632 DAEDLWDTTMDPDKRLLLQVTLED----AALADQMFSILMGEDVEQRRSFIQRNAKDVRF 687

Query: 684 VG 685
           + 
Sbjct: 688 LD 689


>gi|284923056|emb|CBG36149.1| topoisomerase IV subunit B [Escherichia coli 042]
          Length = 630

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 245/647 (37%), Positives = 362/647 (55%), Gaps = 26/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTHPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R   +++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL  + ++KA L   V+  +  +    E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G           V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A  L E  I  ++ R+R    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA  EE K+ +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ I+      + T   ++ L+  K +++R  ++QE+    +
Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627


>gi|110806923|ref|YP_690443.1| DNA topoisomerase IV subunit B [Shigella flexneri 5 str. 8401]
 gi|110616471|gb|ABF05138.1| DNA topoisomerase IV subunit B [Shigella flexneri 5 str. 8401]
          Length = 630

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 245/647 (37%), Positives = 362/647 (55%), Gaps = 26/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-ERVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R   +++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL  + ++KA L   V+  +  +    E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G           V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A  L E  I  ++ R+R    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA  EE K+ +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ I+      + T   ++ L+  K +++R  ++QE+    +
Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627


>gi|15803577|ref|NP_289610.1| DNA topoisomerase IV subunit B [Escherichia coli O157:H7 EDL933]
 gi|12517608|gb|AAG58169.1|AE005533_2 DNA topoisomerase IV subunit B [Escherichia coli O157:H7 str.
           EDL933]
          Length = 630

 Score =  555 bits (1430), Expect = e-156,   Method: Composition-based stats.
 Identities = 244/647 (37%), Positives = 361/647 (55%), Gaps = 26/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  +   V R   +++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEXNVRRDGQVYNIAFENGEKVQDLQVVGNCGKRNTGTSVHFWPD-ETFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL  + ++KA L   V+  +  +    E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G           V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A  L E  I  ++ R+R    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA  EE K+ +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ I+      + T   ++ L+  K +++R  ++QE+    +
Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627


>gi|148979399|ref|ZP_01815505.1| DNA topoisomerase IV subunit B [Vibrionales bacterium SWAT-3]
 gi|145961835|gb|EDK27128.1| DNA topoisomerase IV subunit B [Vibrionales bacterium SWAT-3]
          Length = 626

 Score =  555 bits (1430), Expect = e-156,   Method: Composition-based stats.
 Identities = 244/645 (37%), Positives = 361/645 (55%), Gaps = 24/645 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y+A  + +LEGL+PVR RPGMY   T+ +  +HL  EVIDN++DE +AG+A  I+V 
Sbjct: 2   TEQYNAKDLEVLEGLDPVRHRPGMY---TETERPNHLAQEVIDNSVDEALAGHAKKIKVV 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V D+GRG+PV+ HP+    S +E+ILT LH+GGKF N+ Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVTDDGRGMPVDIHPE-KGISGVELILTKLHSGGKFSNNNYKFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR-GTRITFRPDPKIFGDK 219
           VVNALS  + VTV R+  +       G  ++ L       ++  GT + F PDPK F   
Sbjct: 118 VVNALSKRVEVTVRREGQVHEIALEHGKAVTELTVTGTCGHRNSGTSVHFWPDPKYFDSS 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F   RL+   ++KA L   ++  +S      E        ++++  GLK YL   ++ 
Sbjct: 178 -KFSTLRLINNLRAKAVLCPGLEITFSDKVNNEE-------HKWFYEDGLKDYLAEGVKG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
            +L+  E + G+   +                +    SY N + T +GGTH +GLR  L 
Sbjct: 230 YTLLPEEPYVGEFVAETEM-ANWAIIWQPEGGDMITESYVNLVPTKQGGTHVNGLRQGLL 288

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R + +  DD+      +LSV +++P+FAGQTK +L S      V  
Sbjct: 289 DAMREFCEFRNLLPRGVKLTGDDIFDRCSYVLSVKMQDPQFAGQTKERLSSRQTAAFVSG 348

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L + P  A +L E  I  +  R+R    ++V RK       LPGKL DCS 
Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEACIANAHRRMR--ASKKVVRKKVASGPALPGKLTDCSV 406

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
              + TE+F VEGDSAGGSAKQAR+R  QAV+PLRGKILN     ++++  +Q++ D+  
Sbjct: 407 QDLNRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG    +      LRY K+ I+ DAD DG HIA+LL   F +    L+E  H+++  PP
Sbjct: 467 ALGIDPDNDDL-SGLRYGKICILADADSDGLHIATLLCALFTRHFSALVEAGHIYVAMPP 525

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+RI  G +  YA D++ K  +LE   K  K KI + RFKGLGEM   QL+ET MD N R
Sbjct: 526 LYRIDCGKEVFYALDDDEKDGVLERLSKK-KSKINVQRFKGLGEMNPLQLRETTMDPNTR 584

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            L+++ I+ +    + T + ++ L+G K AD+R  ++Q      +
Sbjct: 585 RLVQLTIDDN----EATLEMMDMLLGKKRADDRRTWLQTNGDMAE 625


>gi|153835670|ref|ZP_01988337.1| DNA topoisomerase IV, B subunit [Vibrio harveyi HY01]
 gi|148867704|gb|EDL66971.1| DNA topoisomerase IV, B subunit [Vibrio harveyi HY01]
          Length = 626

 Score =  555 bits (1430), Expect = e-156,   Method: Composition-based stats.
 Identities = 250/645 (38%), Positives = 358/645 (55%), Gaps = 24/645 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A+ ++V 
Sbjct: 2   TEQYNAGAIEVLNGLEPVRRRPGMY---TDTARPNHLGQEVIDNSVDEALAGHASKVQVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+    S +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + VTV R   ++   F  G  +S L       R  RGT + F PD K F   
Sbjct: 118 VVNALSKRVEVTVRRDGQVYEIAFEHGDKVSDLTVTGTCGRRNRGTSVHFWPDAKYFDSA 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F   RL+   ++KA L   ++  ++            +  ++++  GLK YL   ++ 
Sbjct: 178 N-FSVTRLVNNLRAKAVLCPGLEITFTDK-------VNNKDYKWHYEDGLKDYLSEGVKG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
             ++  E FTG+   +                     SY N I T +GGTH +GLR  L 
Sbjct: 230 YPVLPEEPFTGEFSAETEA-ANWAVIWQPEGGEMITESYVNLIPTAQGGTHVNGLRQGLL 288

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R + +  DD+      +LSV I++P+FAGQTK +L S      V  
Sbjct: 289 DAMREFCEFRNLLPRGVKLTGDDVFDRCSYVLSVKIQDPQFAGQTKERLSSRQTAAFVSG 348

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L + P  A +L E  I  +  R+R    ++V RK       LPGKL DCS 
Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEVCIANAHRRMR--ASKKVVRKKVASGPALPGKLTDCSV 406

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
              + TE+F VEGDSAGGSAKQAR+R  QAV+PLRGKILN     ++++  +Q++ D+  
Sbjct: 407 QDLNRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG    S    + LRY K+ I+ DAD DG HIA+LL   F +    L+E  H+++  PP
Sbjct: 467 ALGIDPDSDNL-DSLRYGKICILADADSDGLHIATLLCALFTRHFRALVEAGHIYVAMPP 525

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+RI  G +  YA D++ K  +LE   K  K KI + RFKGLGEM   QL+ET MD N R
Sbjct: 526 LYRIDCGKEVFYALDDDEKDGVLERLSKK-KAKINVQRFKGLGEMNPLQLRETTMDPNTR 584

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            L+++ I+        T + ++ L+G K AD+R  ++Q      +
Sbjct: 585 RLVQLTIDD----SAATMEMMDMLLGKKRADDRRSWLQNNGDMAE 625


>gi|295394759|ref|ZP_06804974.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294972355|gb|EFG48215.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 700

 Score =  555 bits (1430), Expect = e-156,   Method: Composition-based stats.
 Identities = 243/698 (34%), Positives = 344/698 (49%), Gaps = 60/698 (8%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A+ +Y A  +++LEGLE VR RPGMYIG TD + L H   E+IDNA+DE + GY   I V
Sbjct: 2   ATSDYGARQLQVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNAVDEALGGYGENITV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G +TV DNGRGIPV+  P+    + +E+++T LHAGGKF   +Y   GGLHGVG 
Sbjct: 62  TLHEDGSVTVEDNGRGIPVDIEPR-TGLTGVELVMTKLHAGGKFGGGSYSAVGGLHGVGA 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK----------------- 202
           SVVNALS  L + V R + ++   F RG P    ++ E   +                  
Sbjct: 121 SVVNALSSRLDIEVTRSSKVYRMSFKRGAPGMFTDRNEPHPDNDFTPFKKESKLEVVGKA 180

Query: 203 ----RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY--- 255
                GT+I +  DP+IF   A F+   L+   +  A+L   +K     ++ +A      
Sbjct: 181 KRGVTGTKIRYWADPQIFIRDAKFNYDHLVDRARQTAFLVPGLKITLVDNRGVAVDETGA 240

Query: 256 -GIPEKEEFYFPGGLKTYLQTKLEN---------------RSLISSEIFTGKTE-KKGTH 298
                 EEF F GG+  ++     +               +  +     +G  E ++   
Sbjct: 241 PIPHRVEEFQFDGGISAFVDHLAHDAALTDTWRFTTQSSFKETVPVLNSSGHMESQEVER 300

Query: 299 RGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELT---QNKRA 354
             TV+ A+ W      +  S+ N I T +GGTH SG    + + I+K  E          
Sbjct: 301 DITVDVALRWGNGYDTMLKSFVNIIATPKGGTHVSGFEQGIVKTIRKAVESNARRLKVGK 360

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RTVENALRDPFDHYLVQ 410
             +  DD++     +++V + EP+F GQTK  L +   +    R VE  L    +     
Sbjct: 361 DKLEKDDILAGLTAVVTVALAEPQFEGQTKEVLGTPPVRGIVSRAVEKELTSILESSHRA 420

Query: 411 NPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
              +   LLE V+   + R+  R  R    RKTA+    LP KL DC ++    TELFIV
Sbjct: 421 TKSQVNTLLEKVVAEMKSRISARTHRENQRRKTALESSSLPAKLYDCRKSDVDETELFIV 480

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           EGDSA G+AK ARN   QA+ P+RGKILNV  A    +  N +   L Q +G  +   + 
Sbjct: 481 EGDSAMGTAKAARNSEMQALFPIRGKILNVQKASVADMLANAECAALTQVIGAGSGRSFD 540

Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT-----Q 584
            E  RY KVIIMTDADVDGAHI +LLLT F++ M  L+E   +F   PPL RI      +
Sbjct: 541 LEQARYGKVIIMTDADVDGAHIRTLLLTLFFRYMRPLVEAGRVFAAVPPLHRIEVVNRGK 600

Query: 585 GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644
               +Y + E    K +    +  K      R+KGLGEM A QL ET MD   R L RV 
Sbjct: 601 ANDVIYTYSEAELHKTIARLDRQKKSYKTPQRYKGLGEMDADQLAETTMDPEHRMLRRVT 660

Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           ++     +     + N LMG++   R +FI   A+ +D
Sbjct: 661 MDD----VAKADTTFNLLMGSEVAPRKQFIVSGAASLD 694


>gi|229524416|ref|ZP_04413821.1| topoisomerase IV subunit B [Vibrio cholerae bv. albensis VL426]
 gi|229337997|gb|EEO03014.1| topoisomerase IV subunit B [Vibrio cholerae bv. albensis VL426]
          Length = 626

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 253/647 (39%), Positives = 366/647 (56%), Gaps = 28/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AGYA+ I+V 
Sbjct: 2   TEQYNAGAIEVLNGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGYASKIQVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+    S +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R   ++   F  G  ++ L       R   GT + F PD K F   
Sbjct: 118 VVNALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSP 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL+   ++KA L   ++  ++      E         + +  GLK YL   ++ 
Sbjct: 178 N-FSVSRLINNLRAKAVLCPGLEIIFTDKVNNNE-------HRWLYEDGLKDYLAEGVKG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
            +L+  E FTG+          V WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 YTLLPEEPFTGEF---TAQTEAVTWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + +  +D+      +LS+ +++P+FAGQTK +L S  +   V
Sbjct: 287 LLDAMREFCEFRNLLPRGVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L + P  A +L E  I  +  R+R    ++V RK       LPGKL DC
Sbjct: 347 SGVVKDAFSLWLNEKPQLAEQLAEVCIANAHSRMR--ASKKVVRKKIASGPALPGKLTDC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QAV+PLRGKILN     ++++  +Q++ D+
Sbjct: 405 TVQDLNRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             ALG    S   E  LRY KV I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 465 SVALGIDPDSDNLEA-LRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAM 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA D++ K+ +LE   +  K K+ + RFKGLGEM   QL+ET MD N
Sbjct: 524 PPLYRIDCGKEVFYALDDQEKEGVLERLSQK-KAKVNVQRFKGLGEMNPLQLRETTMDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ I+      + T + ++ L+G K AD+R  ++Q      +
Sbjct: 583 TRRLVQLTIDD----AEATDEMMDMLLGKKRADDRRAWLQRNGDMAE 625


>gi|160878454|ref|YP_001557422.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium phytofermentans
           ISDg]
 gi|160427120|gb|ABX40683.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium phytofermentans
           ISDg]
          Length = 642

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 234/662 (35%), Positives = 347/662 (52%), Gaps = 40/662 (6%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + Y+ S I +LEGLE VR RPGMYIG T  + LHHL  E++DN +DE +AG+ N +E++L
Sbjct: 2   EQYNGSQIVVLEGLEAVRKRPGMYIGSTGTRGLHHLIWEILDNGIDEHLAGFCNQLEITL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G +++ D+GRG+PV+ HP      T  ++ T LHAGGKF  S Y++SGGLHGVG SV
Sbjct: 62  LKDGGISIADHGRGVPVDIHP-TKKIPTARVVYTILHAGGKFGGSVYKVSGGLHGVGASV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE-------KVRNKRGTRITFRPDPK 214
           VNALS  + V + R   I+  ++  G       +           ++  GT++TF PDP 
Sbjct: 121 VNALSTRMIVEIRRDGKIYRDEYEHGGHPCVELENGMLPVVGKCNKSDTGTKVTFYPDPT 180

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     F A  + K  +  A+L+  +   +       +K        +    G+K+++ 
Sbjct: 181 IFET-VEFKAETITKKLKEVAFLNKNLSIVFYDQNTGFKKT-------YCEEFGIKSFVS 232

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
                 S+I  E    + +        VE A+ +      +I +YCN I   +GGT  +G
Sbjct: 233 YINREASVIHEEPIYIEGKSGDI---EVEVALQYTNSFSEQINAYCNRINVVDGGTLVTG 289

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            + ALTR + +YA       ++  +    D+    V I+S+   +P+F GQTKTKL + D
Sbjct: 290 FKTALTRVMNQYARELGVLKEKDENFDGKDIRNGLVTIISIKHPDPQFEGQTKTKLGNTD 349

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           A+  VE+        +  +N      +LE  +     R    K R       +  +    
Sbjct: 350 AKSAVEDVFSGEVTRFFDKNVEILKAILENSMRSYTARKASDKARS-AVLKQLNDIDTKS 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLA CS       E++IVEGDSAGG+ K ARNR  QAVLPLRGKI+NV  A  EKI  N 
Sbjct: 409 KLASCSSKKPEECEVYIVEGDSAGGTVKTARNRRTQAVLPLRGKIINVEKATLEKILVNN 468

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++ + GC     +    LRY+K+II+TDADVDGAHI++LLLTFFY+ M +LI +  
Sbjct: 469 EIKSMIASFGCGIGEDFDISKLRYDKIIILTDADVDGAHISTLLLTFFYRFMPELIMEGK 528

Query: 572 LFLISPPLFRI-------TQGTKSVYAHDEEHKQKILEEFKKHGKGK-IEISRFKGLGEM 623
           ++   PPL+R+        +  K  Y +++      L++F+K+ K K I I R+KGLGEM
Sbjct: 529 IYRGLPPLYRVEYETSEGKKKKKFEYIYNDFE----LDKFRKNTKHKIIHIQRYKGLGEM 584

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
            A QL ET ++   R L +V I   +    D  ++   LM      R  FI + A +   
Sbjct: 585 DAEQLWETTLNPETRVLAQVSITDTV----DADETTTLLMSNNVPPRRAFIMDEAKYAK- 639

Query: 684 VG 685
           + 
Sbjct: 640 LD 641


>gi|294790228|ref|ZP_06755386.1| DNA gyrase, B subunit [Scardovia inopinata F0304]
 gi|294458125|gb|EFG26478.1| DNA gyrase, B subunit [Scardovia inopinata F0304]
          Length = 703

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 247/711 (34%), Positives = 380/711 (53%), Gaps = 33/711 (4%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFA--NQSASDNYDASSIRILEGLEPV 58
           M D+  D+ +   PQ + ++   +K     +S      ++   ++YDAS +R+LEGLE V
Sbjct: 1   MADE--DMTNPTDPQEEQTAVTEQKEDAPLNSNGEQLDDEMKPEHYDASDLRVLEGLEAV 58

Query: 59  RMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPV 118
           R+RPGMYIG T  + LHHL  E++DN++DE +AGYA+ IEV++     + VVD+GRGIPV
Sbjct: 59  RIRPGMYIGSTGPRGLHHLVYEIVDNSVDEALAGYASHIEVTILSGNGIQVVDDGRGIPV 118

Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178
           +  P    KS +E ++T LHAGGKF    Y +SGGLHGVGISVVNALS  + V V RQ  
Sbjct: 119 DEVP-GEGKSGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDVEVRRQGY 177

Query: 179 IFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAY 236
            ++Q +    PL+PL++ + +      GT +TF  DP IF     +D   L    Q  A+
Sbjct: 178 HWTQTYVNQKPLAPLKQGKPMNEGETTGTSVTFWADPAIFDT-TDYDFETLRSRFQQMAF 236

Query: 237 LSGRVKTCWSCDKEIAEKYGI------------PEKEEFYFPGGLKTYLQTKLENRSLIS 284
           L+  +K   +  + I E                     + +  G+K Y+   ++ ++   
Sbjct: 237 LNKGLKISLTDLRSIDEAGDEVASDGDNVVEELHRTVTYQYVNGIKDYVNYLVKAKNANP 296

Query: 285 SEIFTGKTEKKGTHRG-TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
            E      + + TH+G + E A+ W       + ++ NTI T EGGTHE G R ALT  +
Sbjct: 297 IENDIIDIDAEDTHQGISAEIAMQWTSAYSESVHTFANTISTTEGGTHEEGFRAALTGLV 356

Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
            +YA       ++  ++  DD+    V ++SV +  P+F GQTKTKL +  A+  V+  +
Sbjct: 357 NRYARDKGILKEKDDNLSGDDVREGLVAVVSVKLTVPQFEGQTKTKLGNAIAKTFVQRVM 416

Query: 401 RDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
            +    +   +P EA  +++  +E        ++ +    RK+      +P KL DC  +
Sbjct: 417 TERMTDWFDAHPSEAKSIIQKGMEAARARLAAKKARESTRRKSIFESAGMPDKLKDCQSS 476

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
                ELFIVEGDSAGGSA Q RN   QA+LPLRGKILN   A  +++  +  I  L+ A
Sbjct: 477 DPSECELFIVEGDSAGGSAIQGRNPLTQAILPLRGKILNTERASLDRMMKSDTIESLITA 536

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           +G     ++    +RY K+IIM DADVDGAHIA+L LT F++ M  +I + ++++  PPL
Sbjct: 537 IGGGYGEEFDISKVRYHKIIIMADADVDGAHIATLNLTLFFRYMRPMITEGYVYVAMPPL 596

Query: 580 FRITQGTKSV-YAHDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDA 635
           +R+        + + +  + ++LEE +  G+       I R+KGLGEM   +L ET MD 
Sbjct: 597 YRLKWTKGPHDFVYTDAERDRVLEEGRSKGRQLPKGEGIQRYKGLGEMTYQELWETTMDP 656

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           + R L ++ I+          ++ + LMG + + R  FIQ  A     +  
Sbjct: 657 DHRILKQIHIDD----AAQADETFSMLMGEEVEPRRLFIQRNAHDARFIDA 703


>gi|153831107|ref|ZP_01983774.1| topoisomerase IV, subunit B [Vibrio cholerae 623-39]
 gi|148873413|gb|EDL71548.1| topoisomerase IV, subunit B [Vibrio cholerae 623-39]
          Length = 626

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 248/645 (38%), Positives = 362/645 (56%), Gaps = 24/645 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AGYA+ I+V 
Sbjct: 2   TEQYNAGAIEVLNGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGYASKIQVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+    S +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R   ++   F  G  ++ L       R   GT + F PD K F   
Sbjct: 118 VVNALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSP 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL+   ++KA L   ++  ++      E         + +  GLK YL   ++ 
Sbjct: 178 N-FSVSRLINNLRAKAVLCPGLEIIFTDKVNNNE-------HRWLYEDGLKDYLAEGVKG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
            +L+  E FTG+   +     T               SY N I T +GGTH +GLR  L 
Sbjct: 230 YTLLPEEPFTGEFTAQTEA-ATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLL 288

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R + +  +D+      +LS+ +++P+FAGQTK +L S  +   V  
Sbjct: 289 DAMREFCEFRNLLPRGVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSG 348

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L + P  A +L E  I  +  R+R    ++V RK       LPGKLADC+ 
Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEVCIANAHSRMR--ASKKVVRKKIASGPALPGKLADCTV 406

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
              + TELF+VEGDSAGGSAKQAR+R  QAV+PLRGKILN     ++++  +Q++ D+  
Sbjct: 407 QDLNRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG    +   E  LRY KV I+ DAD DG HIA+LL   F +    L++  H+++  PP
Sbjct: 467 ALGIDPDNDNLEA-LRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPP 525

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+RI  G +  YA D++ K+ +LE   +  K K+ + RFKGLGEM   QL+ET MD N R
Sbjct: 526 LYRIDCGKEVFYALDDQEKEGVLERLSQK-KAKVNVQRFKGLGEMNPLQLRETTMDPNTR 584

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            L+++ I+      + T + ++ L+G K AD+R  ++Q      +
Sbjct: 585 RLVQLTIDD----AEATDEMMDMLLGKKRADDRRTWLQRNGDMAE 625


>gi|314922686|gb|EFS86517.1| DNA gyrase, B subunit [Propionibacterium acnes HL001PA1]
          Length = 685

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 250/662 (37%), Positives = 365/662 (55%), Gaps = 19/662 (2%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
              +   +YDA  I +LEGLE VR RPGMYIG T E+ LHH   E++DN++DE +AGY +
Sbjct: 30  PPTTVDGSYDAGQITVLEGLEAVRKRPGMYIGSTGERGLHHCVYEIVDNSVDEAMAGYCD 89

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I+V L  + +  V DNGRGIPV+ HP   +  T+ ++LT LHAGGKF N  Y++SGGLH
Sbjct: 90  TIQVELLDDNWCQVTDNGRGIPVKEHP-VEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLH 148

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDP 213
           GVG SVVNAL+    V V R    + Q FS G P  PLE+ E     +  GT + F+P  
Sbjct: 149 GVGSSVVNALAAHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDHEGTTVRFQPSD 208

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTY 272
           +IF     FD   L    +  A+L+  ++   +  + + A++ G P  E+F +  GLK Y
Sbjct: 209 EIFDAIV-FDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDY 267

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++     R +I+  I + ++ +     G +E A+ W       + ++ N I T EGG HE
Sbjct: 268 VRFLTGTRDVINPTIISLESHRPEEGMG-LEIAMQWNTSYATSVHTFANAINTIEGGAHE 326

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G R ALT  + ++ E      KR   +  DD+    + ++S+ + EP+F GQTKTKL +
Sbjct: 327 EGFRAALTNTVNRWGETWGLIKKREDRVSGDDIREGLIAVVSIKLTEPQFEGQTKTKLGN 386

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA--IRKL 447
            +A+  V+ AL +    +  +NP E   ++      ++ R+  RK R++ R     +   
Sbjct: 387 AEAKSFVQKALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARSRKGLLGST 446

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKL DCS       E+FIVEGDSAGGSA Q R+   QA+LPLRGKILNV  A  ++ 
Sbjct: 447 SLPGKLKDCSSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRA 506

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             ++ I  ++ ALG      +  + LRY K+I+M DADVDGAHI +LLLT  ++ M  +I
Sbjct: 507 LGSETIESIINALGTGVHEDFDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVI 566

Query: 568 EQKHLFLISPPLFRITQGTKSVY-AHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEM 623
           +  H++L  PPLFR+         A+ +E +  +  +   HGK   +   I R+KGLGEM
Sbjct: 567 DAGHVYLAQPPLFRLRWTNSPHELAYSDEERDLLRGDGLTHGKKLPQVNPIQRYKGLGEM 626

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
            A  L +T MD +KR LL+V +              + LMG   ++R  FIQ  A  +  
Sbjct: 627 DAEDLWDTTMDPDKRLLLQVTLED----AALADQMFSILMGEDVEQRRSFIQRNAKDVRF 682

Query: 684 VG 685
           + 
Sbjct: 683 LD 684


>gi|91228380|ref|ZP_01262307.1| DNA topoisomerase IV subunit B [Vibrio alginolyticus 12G01]
 gi|91188079|gb|EAS74384.1| DNA topoisomerase IV subunit B [Vibrio alginolyticus 12G01]
          Length = 626

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 254/645 (39%), Positives = 355/645 (55%), Gaps = 24/645 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A+ ++V 
Sbjct: 2   TEQYNAGAIEVLNGLEPVRRRPGMY---TDTARPNHLGQEVIDNSVDEALAGHASKVQVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+    S +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + VTV R   ++   F  G  +S L       R  RGT + F PD K F   
Sbjct: 118 VVNALSKRVEVTVRRDGQVYEIAFEHGEKVSDLTVTGTCGRRNRGTSVHFWPDAKYFDSA 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F   RL+   ++KA L   ++   +            +  ++Y+  GLK YL   ++ 
Sbjct: 178 N-FSVTRLVNNLRAKAVLCPGLEITLTDK-------VNDKDYKWYYEDGLKDYLAEGVKG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
             +I  E FTG+                         SY N I T +GGTH +GLR  L 
Sbjct: 230 YPVIPEEPFTGEFLADTEA-ANWAVIWQPEGGEMITESYVNLIPTAQGGTHVNGLRQGLL 288

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R + +  DD+      +LSV I++P+FAGQTK +L S      V  
Sbjct: 289 EAMREFCEFRNLLPRGVKLTGDDVFDRCSYVLSVKIQDPQFAGQTKERLSSRQTAAFVSG 348

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L + P  A +L E  I  +  R+R    ++V RK       LPGKL DCS 
Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEVCIANAHRRMR--AAKKVVRKKVASGPALPGKLTDCSA 406

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TE+F VEGDSAGGSAKQAR+R  QAV+PLRGKILN     ++++  +Q++ D+  
Sbjct: 407 QDLSRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG    S    E LRY K+ I+ DAD DG HIA+LL   F +    L+E  H+++  PP
Sbjct: 467 ALGIDPDSDNL-ESLRYGKICILADADSDGLHIATLLCALFTRHFRALVEAGHIYVAMPP 525

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+RI  G +  YA D++ K  ILE   K  K KI + RFKGLGEM   QL+ET MD N R
Sbjct: 526 LYRIDCGKEVFYALDDDEKDGILERLSKK-KAKINVQRFKGLGEMNPLQLRETTMDPNTR 584

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            L+++ I+        T + ++ L+G K AD+R  ++Q      +
Sbjct: 585 RLVQLTIDDST----ATMEMMDMLLGKKRADDRRSWLQNNGDLAE 625


>gi|13358029|ref|NP_078303.1| DNA topoisomerase IV subunit B [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|170761866|ref|YP_001752551.1| DNA topoisomerase IV subunit B [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|11270883|pir||G82886 topoisomerase IV subunit B UU466 [imported] - Ureaplasma
           urealyticum
 gi|6899460|gb|AAF30878.1|AE002143_3 topoisomerase IV subunit B [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|168827443|gb|ACA32705.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
          Length = 642

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 244/655 (37%), Positives = 353/655 (53%), Gaps = 33/655 (5%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ YD ++I+ILEGLE VR RPGMYIG T    LHHL  E++DN++DEV+   A  I V 
Sbjct: 2   ANKYDGNAIKILEGLEAVRKRPGMYIGSTSSTGLHHLIWEIVDNSIDEVMNANAKNINVI 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  ++V+D+GRGIPV+ + +    ST+E +LT LHAGGKFD S Y+ +GGLHGVG S
Sbjct: 62  LHEDNSISVLDDGRGIPVDINSQ-TKISTVETVLTVLHAGGKFDESAYKTAGGLHGVGSS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  L   V R   I+  KF  G  ++   K      K GT I F PDP IF +  
Sbjct: 121 VVNALSSWLICEVYRDQKIYQAKFINGGHINQSLKVIGTTKKTGTLIHFLPDPLIFKNLV 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F+   + +      +L   +K  +       E     +K EF    GL  +++   E +
Sbjct: 181 -FNPNIIKERLHESTFLIKDLKIIF-------EDKINKKKYEFINNQGLIDFIKFINEAK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHESGLRVALT 339
              S  I+     +   ++  VE A  + ++ N  + S+ N++ T EGG HE+  + ALT
Sbjct: 233 KTFSDVIYF----RSNINKIDVEIAFQYSDQNNEIMVSFANSVKTSEGGVHENAFKNALT 288

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395
             +  YA       ++  ++  DD+      ++S+ I E    + GQTK KL + +A   
Sbjct: 289 SVVNNYARKHNLLKEKDKNLEGDDIREGLSSVISLRIPESLISYEGQTKNKLFTPEANEA 348

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK--LRLPGKL 453
           V+  + D F  +L +N  +A  L+   I   + +L  ++ RE  +K    K    + GKL
Sbjct: 349 VKKTIEDNFSFWLEENKTQALDLVNRAILARDAKLAAKRAREETKKVKKIKEERGMGGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      ELF+VEGDSAGGSAK  RN+  QA+LPLRGK+LNV  A    +  N++I
Sbjct: 409 TPAQSKDPVLNELFLVEGDSAGGSAKLGRNKKYQAILPLRGKVLNVLKARLVDVLKNEEI 468

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             +   LG    +++  + L+Y K+IIMTDAD DG+HI  LLLT FY+ M  LIE  +++
Sbjct: 469 ASIFTCLGTGIGAEFDLKKLKYHKIIIMTDADTDGSHIQVLLLTLFYRFMRPLIENGNIY 528

Query: 574 LISPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +  PPL+++T     K  YA D+    ++ +E K       EI R+KGLGEM A QL ET
Sbjct: 529 IALPPLYKLTNKNNKKFFYAWDDVELDQLKKEQKN-----YEIQRYKGLGEMNADQLFET 583

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF--IDDV 684
            MD N R LL++ IN  L      +  IN LMG     R ++I     F  ID++
Sbjct: 584 TMDPNNRLLLKININDIL----QAERQINTLMGNDVSIRKQWIDNNIDFSVIDEL 634


>gi|269967413|ref|ZP_06181473.1| DNA topoisomerase 4 subunit B [Vibrio alginolyticus 40B]
 gi|269828001|gb|EEZ82275.1| DNA topoisomerase 4 subunit B [Vibrio alginolyticus 40B]
          Length = 626

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 254/645 (39%), Positives = 355/645 (55%), Gaps = 24/645 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A+ ++V 
Sbjct: 2   TEQYNAGAIEVLNGLEPVRRRPGMY---TDTARPNHLGQEVIDNSVDEALAGHASKVQVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+    S +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + VTV R   ++   F  G  +S L       R  RGT + F PD K F   
Sbjct: 118 VVNALSKRVEVTVRRDGQVYEIAFEHGEKVSDLTVTGTCGRRNRGTSVHFWPDAKYFDSA 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F   RL+   ++KA L   ++   +            +  ++Y+  GLK YL   ++ 
Sbjct: 178 N-FSVTRLVNNLRAKAVLCPGLEITLTDK-------VNGKDYKWYYEDGLKDYLAEGVKG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
             +I  E FTG+                         SY N I T +GGTH +GLR  L 
Sbjct: 230 YPVIPEEPFTGEFLADTEA-ANWAVIWQPEGGEMITESYVNLIPTAQGGTHVNGLRQGLL 288

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R + +  DD+      +LSV I++P+FAGQTK +L S      V  
Sbjct: 289 EAMREFCEFRNLLPRGVKLTGDDVFDRCSYVLSVKIQDPQFAGQTKERLSSRQTAAFVSG 348

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L + P  A +L E  I  +  R+R    ++V RK       LPGKL DCS 
Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEVCIANAHRRMR--AAKKVVRKKVASGPALPGKLTDCSA 406

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TE+F VEGDSAGGSAKQAR+R  QAV+PLRGKILN     ++++  +Q++ D+  
Sbjct: 407 QDLSRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG    S    E LRY K+ I+ DAD DG HIA+LL   F +    L+E  H+++  PP
Sbjct: 467 ALGIDPDSDNL-ESLRYGKICILADADSDGLHIATLLCALFTRHFRALVEAGHIYVAMPP 525

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+RI  G +  YA D++ K  ILE   K  K KI + RFKGLGEM   QL+ET MD N R
Sbjct: 526 LYRIDCGKEVFYALDDDEKDGILERLSKK-KAKINVQRFKGLGEMNPLQLRETTMDPNTR 584

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            L+++ I+        T + ++ L+G K AD+R  ++Q      +
Sbjct: 585 RLVQLTIDDST----ATMEMMDMLLGKKRADDRRSWLQNNGDLAE 625


>gi|258620848|ref|ZP_05715882.1| DNA topoisomerase 4 subunit B [Vibrio mimicus VM573]
 gi|258626885|ref|ZP_05721689.1| DNA topoisomerase 4 subunit B [Vibrio mimicus VM603]
 gi|258580808|gb|EEW05753.1| DNA topoisomerase 4 subunit B [Vibrio mimicus VM603]
 gi|258586236|gb|EEW10951.1| DNA topoisomerase 4 subunit B [Vibrio mimicus VM573]
          Length = 626

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 249/645 (38%), Positives = 361/645 (55%), Gaps = 24/645 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AGYA+ I+V 
Sbjct: 2   TEQYNAGAIEVLNGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGYASKIQVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+    S +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R   ++   F  G  ++ L       R   GT + F PD K F   
Sbjct: 118 VVNALSKRVEVAVRRDGQVYEIAFEHGDKVTELAVTGTCGRRNTGTSVHFWPDTKYFDSP 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL+   ++KA L   ++  ++      E         + +  GLK YL   ++ 
Sbjct: 178 N-FSVSRLINNLRAKAVLCPGLEIIFTDKVNNNE-------HRWLYEDGLKDYLAEGVKG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
            +L+  E FTG+   +     T               SY N I T +GGTH +GLR  L 
Sbjct: 230 YTLLPEEPFTGEFTAQTEA-ATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLL 288

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R + +  +D+      +LSV +++P+FAGQTK +L S  +   V  
Sbjct: 289 DAMREFCEFRNLLPRGVKLTGEDVFDRCAYVLSVKMQDPQFAGQTKERLSSRQSAAFVSG 348

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L + P  A +L E  I  +  R+R    ++V RK       LPGKL DC+ 
Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEVCIANAHRRMR--ASKKVVRKKIASGPALPGKLTDCTV 406

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
              + TELF+VEGDSAGGSAKQAR+R  QAV+PLRGKILN     ++++  +Q++ D+  
Sbjct: 407 QDLNRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG    S    E LRY KV I+ DAD DG HIA+LL   F +    L++  H+++  PP
Sbjct: 467 ALGIDPDSDNL-ESLRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPP 525

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+RI  G +  YA D++ K+ +LE   +  K K+ + RFKGLGEM   QL+ET MD N R
Sbjct: 526 LYRIDCGKEVFYALDDQEKEGVLERLSQK-KAKVNVQRFKGLGEMNPLQLRETTMDPNTR 584

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            L+++ I+      + T + ++ L+G K AD+R  ++Q      +
Sbjct: 585 RLVQLTIDD----AEATDEMMDMLLGKKRADDRRTWLQRNGDMAE 625


>gi|308050989|ref|YP_003914555.1| DNA topoisomerase IV subunit B [Ferrimonas balearica DSM 9799]
 gi|307633179|gb|ADN77481.1| DNA topoisomerase IV subunit B [Ferrimonas balearica DSM 9799]
          Length = 630

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 254/650 (39%), Positives = 367/650 (56%), Gaps = 27/650 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S+ Y + +I +L GLEPV+ RPGMY   TD    +HL  EVIDN++DE +AG+A+ I+V 
Sbjct: 2   SNQYTSDAIEVLSGLEPVQKRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHASEIQVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHPDHSLEVIDDGRGMPVDIHPE-EGVPGVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + VTV R   ++   F  G  +  L       R   GTR+ F PDPK F  +
Sbjct: 118 VVNALSRRVEVTVRRDAQVYEIAFEHGAKVQDLTVTGTCGRRNTGTRVHFWPDPKYFDSE 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F ++RL+ + ++KA L   +K  +    +        E+ E+YF  GL+ YL   ++ 
Sbjct: 178 -KFSSSRLIHLLRAKAVLCPGLKIRFDDKIK-------GERHEWYFEDGLRDYLVDAVKE 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVA 337
              +  E F G           V+WA+ W  E  +    SY N I T +GGTH +G R  
Sbjct: 230 WPKLPEEPFVGSFSANNE---AVDWAVLWLPEGGDSVSESYVNLIPTAQGGTHVNGFRQG 286

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R I +  +D+   A  ILS  +++P+FAGQTK +L S  +   V
Sbjct: 287 LLEAMREFCEFRNLLPRGIKLGPEDIWDKASYILSTKMQDPQFAGQTKERLSSRQSSAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              +RD F  +L ++  +A  L E  I  ++ RLR+ K  +V RK       LPGKL DC
Sbjct: 347 SGVVRDAFSLWLNEHTDQAELLAELCINNAQSRLRKAK--KVARKKVTSGPALPGKLTDC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S   A   ELF+VEGDSAGGSAKQAR++  QA++PLRGKILN     + ++  +Q++ D+
Sbjct: 405 SGQDASRGELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNTWEVDAAQVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+GC   S      LRY K+ I+ DAD DG HIA+LL   F Q    L+E+ H+++  
Sbjct: 465 SVAIGCDPDSDDI-SGLRYGKICILADADSDGLHIATLLCALFMQHFRTLVERGHVYVAM 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDA 635
           PPLFR+  G +  YA DE  KQ IL+  K   K GK++++RFKGLGEM   QL+ET MD 
Sbjct: 524 PPLFRVDVGKEVFYALDEGEKQGILDRIKAENKRGKVQVTRFKGLGEMNPVQLRETTMDP 583

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           N R L+++ ++    ++         L   ++ +R ++++      D + 
Sbjct: 584 NTRRLVQLTVDDAEATMALMDML---LAKKRSGDRKEWLERNGDLAD-LD 629


>gi|156973195|ref|YP_001444102.1| DNA topoisomerase IV subunit B [Vibrio harveyi ATCC BAA-1116]
 gi|156524789|gb|ABU69875.1| hypothetical protein VIBHAR_00875 [Vibrio harveyi ATCC BAA-1116]
          Length = 626

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 250/645 (38%), Positives = 359/645 (55%), Gaps = 24/645 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A+ ++V 
Sbjct: 2   TEQYNAGAIEVLNGLEPVRRRPGMY---TDTARPNHLGQEVIDNSVDEALAGHASKVQVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+    S +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + VTV R   ++   F  G  +S L       R  RGT + F PD K F   
Sbjct: 118 VVNALSKRVEVTVRRDGQVYEIAFEHGDKVSDLTVTGTCGRRNRGTSVHFWPDAKYFDSA 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F   RL+   ++KA L   ++  ++            +  ++++  GLK YL   ++ 
Sbjct: 178 N-FSVTRLVNNLRAKAVLCPGLEITFTDK-------VNNKDYKWHYEDGLKDYLAEGVKG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
             ++  E FTG+   +                     SY N I T +GGTH +GLR  L 
Sbjct: 230 YPVLPEEPFTGEFSAETEA-ANWAVIWQPEGGEMITESYVNLIPTAQGGTHVNGLRQGLL 288

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R + +  DD+      +LSV I++P+FAGQTK +L S      V  
Sbjct: 289 DAMREFCEFRNLLPRGVKLTGDDVFDRCSYVLSVKIQDPQFAGQTKERLSSRQTAAFVSG 348

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L + P  A +L E  I  +  R+R    ++V RK       LPGKL DCS 
Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEVCIANAHRRMR--ASKKVVRKKVASGPALPGKLTDCSV 406

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
              + TE+F VEGDSAGGSAKQAR+R  QAV+PLRGKILN     ++++  +Q++ D+  
Sbjct: 407 QDLNRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG    S    + LRY K+ I+ DAD DG HIA+LL   F +    L+E  H+++  PP
Sbjct: 467 ALGIDPDSDNL-DSLRYGKICILADADSDGLHIATLLCALFTRHFRALVEAGHIYVAMPP 525

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+RI  G +  YA D++ K  +LE   K  K KI + RFKGLGEM   QL+ET MD N R
Sbjct: 526 LYRIDCGKEVFYALDDDEKDGVLERLSKK-KAKINVQRFKGLGEMNPLQLRETTMDPNTR 584

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            L+++ I+  +     T + ++ L+G K AD+R  ++Q      +
Sbjct: 585 RLVQLTIDDSV----ATMEMMDMLLGKKRADDRRSWLQNNGDMAE 625


>gi|324114937|gb|EGC08902.1| DNA topoisomerase IV [Escherichia fergusonii B253]
          Length = 630

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 245/647 (37%), Positives = 363/647 (56%), Gaps = 26/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R   +++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL  + ++KA L   V+  +  +    E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G    +      V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LPTLPEKPFIGNFSGETE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A  L E  I  ++ R+R    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFSLWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKHGHVYVAL 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA  EE K+ +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPLQLRETTLDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ I+      + T   ++ L+  K +++R  ++QE+    +
Sbjct: 583 TRRLVQLFIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627


>gi|183508547|ref|ZP_02958068.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
 gi|182675987|gb|EDT87892.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
          Length = 642

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 243/655 (37%), Positives = 351/655 (53%), Gaps = 33/655 (5%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ YD ++I+ILEGLE VR RPGMYIG T    LHHL  E++DN++DEV+   A  I V 
Sbjct: 2   ANKYDGNAIKILEGLEAVRKRPGMYIGSTSSTGLHHLIWEIVDNSIDEVMNANAKNINVI 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  ++V+D+GRGIPV+ + +    ST+E +LT LHAGGKFD   Y+ +GGLHGVG S
Sbjct: 62  LHEDNSISVLDDGRGIPVDINSQ-TKISTVETVLTVLHAGGKFDEGAYKTAGGLHGVGSS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  L   V R   I+  KF  G  +    K      K GT I F PDP IF +  
Sbjct: 121 VVNALSSWLICEVYRDQKIYQAKFINGGHIDQSLKVIGTTKKTGTLIHFLPDPLIFKNLV 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F+   + +      +L   +K  +       E     +K EF    GL  +++   E +
Sbjct: 181 -FNPNIIKERLHESTFLIKDLKIIF-------EDKINKKKYEFINNQGLIDFIKFINEAK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHESGLRVALT 339
              S  I+     +   ++  VE A  + ++ N  + S+ N++ T EGG HE+  + ALT
Sbjct: 233 KTFSDVIYF----RSNINKIDVEIAFQYSDQNNEIMVSFANSVKTSEGGVHENAFKNALT 288

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395
             +  YA       ++  ++  DD+      ++S+ I E    + GQTK KL + +A   
Sbjct: 289 SVVNNYARKHNLLKEKDKNLEGDDIREGLSSVISLRIPESLISYEGQTKNKLFTPEANEA 348

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK--LRLPGKL 453
           V+  + D F  +L +N  +A  L+   I   + +L  ++ RE  +K    K    + GKL
Sbjct: 349 VKKTIEDNFSFWLEENKTQALDLVNRAILARDAKLAAKRAREETKKVKKIKEERGMGGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      ELF+VEGDSAGGSAK  RN+  QA+LPLRGK+LNV  A    +  N++I
Sbjct: 409 TPAQSKDPVLNELFLVEGDSAGGSAKLGRNKKYQAILPLRGKVLNVLKARLVDVLKNEEI 468

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             +   LG    +++  + L+Y K+IIMTDAD DG+HI  LLLT FY+ M  LIE  +++
Sbjct: 469 ASIFTCLGTGIGAEFDLKKLKYHKIIIMTDADTDGSHIQVLLLTLFYRFMRPLIENGNIY 528

Query: 574 LISPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +  PPL+++T     K  YA D+    ++ +E K       EI R+KGLGEM A QL ET
Sbjct: 529 IALPPLYKLTNKNNKKFFYAWDDVELDQLKKEQKN-----YEIQRYKGLGEMNADQLFET 583

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF--IDDV 684
            MD N R LL++ IN  L      +  IN LMG     R ++I     F  ID++
Sbjct: 584 TMDPNNRLLLKININDIL----QAERQINTLMGNDVSIRKQWIDNNIDFSVIDEL 634


>gi|312914206|dbj|BAJ38180.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
          Length = 630

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 248/650 (38%), Positives = 366/650 (56%), Gaps = 27/650 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + VTV R   +++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVTVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ESFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL+ + ++KA L   V+  +  +   +E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLMHVLKAKAVLCPGVEITFKDEVNNSE-------QRWCYQDGLNDYLGEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G    +      V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LPTLPEKPFIGNFNGETE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A +L E  I  ++ RLR    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFSLWLNQNVQAAEQLAEMAIASAQRRLR--AAKKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+
Sbjct: 405 TAQDLNRTELFFVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVKNGHVYVAL 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA  EE K  +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 524 PPLYRIDLGKEVYYALTEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDVG 685
            R L+++ I+      + T   ++ L+  K +++R  ++QE+    D + 
Sbjct: 583 TRRLVQLTISD--EDDQRTNAMMDMLLAKKRSEDRRNWLQEKGDLAD-LD 629


>gi|186701799|ref|ZP_02971474.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
 gi|186701080|gb|EDU19362.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
          Length = 642

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 244/655 (37%), Positives = 352/655 (53%), Gaps = 33/655 (5%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ YD ++I+ILEGLE VR RPGMYIG T    LHHL  E++DN++DEV+   A  I V 
Sbjct: 2   ANKYDGNAIKILEGLEAVRKRPGMYIGSTSSTGLHHLIWEIVDNSIDEVMNANAKNINVI 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  ++V+D+GRGIPV+ + +    ST+E +LT LHAGGKFD S Y+ +GGLHGVG S
Sbjct: 62  LHEDNSISVLDDGRGIPVDINSQ-TKISTVETVLTVLHAGGKFDESAYKTAGGLHGVGSS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  L   V R   I+  KF  G  +    K      K GT I F PDP IF +  
Sbjct: 121 VVNALSSWLICEVYRDQKIYQAKFINGGHIDQSLKVIGTTKKTGTLIHFLPDPLIFKNLV 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F+   + +      +L   +K  +       E     +K EF    GL  +++   E +
Sbjct: 181 -FNPNIIKERLHESTFLIKDLKIIF-------EDKINKKKYEFINNQGLIDFIKFINEAK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHESGLRVALT 339
              S  I+     +   ++  VE A  + ++ N  + S+ N++ T EGG HE+  + ALT
Sbjct: 233 KTFSDVIYF----RSNINKIDVEIAFQYSDQNNEIMVSFANSVKTSEGGVHENAFKNALT 288

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395
             +  YA       ++  ++  DD+      ++S+ I E    + GQTK KL + +A   
Sbjct: 289 SVVNNYARKHNLLKEKDKNLEGDDIREGLSSVISLRIPESLISYEGQTKNKLFTPEANEA 348

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK--LRLPGKL 453
           V+  + D F  +L +N  +A  L+   I   + +L  ++ RE  +K    K    + GKL
Sbjct: 349 VKKTIEDNFSFWLEENKTQALDLVNRAILARDAKLAAKRAREETKKVKKIKEERGMGGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      ELF+VEGDSAGGSAK  RN+  QA+LPLRGK+LNV  A    +  N++I
Sbjct: 409 TPAQSKDPVLNELFLVEGDSAGGSAKLGRNKKYQAILPLRGKVLNVLKARLVDVLKNEEI 468

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             +   LG    +++  + L+Y K+IIMTDAD DG+HI  LLLT FY+ M  LIE  +++
Sbjct: 469 ASIFTCLGTGIGAEFDLKKLKYHKIIIMTDADTDGSHIQVLLLTLFYRFMRPLIENGNIY 528

Query: 574 LISPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +  PPL+++T     K  YA D+    ++ +E K       EI R+KGLGEM A QL ET
Sbjct: 529 IALPPLYKLTNKNNKKFFYAWDDVELDQLKKEQKN-----YEIQRYKGLGEMNADQLFET 583

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF--IDDV 684
            MD N R LL++ IN  L      +  IN LMG     R ++I     F  ID++
Sbjct: 584 TMDPNNRLLLKININDIL----QAERQINTLMGNDVSIRKQWIDNNIDFSVIDEL 634


>gi|254230596|ref|ZP_04923958.1| DNA topoisomerase IV, B subunit [Vibrio sp. Ex25]
 gi|151936883|gb|EDN55779.1| DNA topoisomerase IV, B subunit [Vibrio sp. Ex25]
          Length = 626

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 254/645 (39%), Positives = 355/645 (55%), Gaps = 24/645 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A+ ++V 
Sbjct: 2   TEQYNAGAIEVLNGLEPVRRRPGMY---TDTARPNHLGQEVIDNSVDEALAGHASKVQVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+    S +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + VTV R   ++   F  G  +S L       R  RGT + F PD K F   
Sbjct: 118 VVNALSKRVEVTVRRDGQVYEIAFEHGDKVSDLTVTGTCGRRNRGTSVHFWPDAKYFDSA 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F   RL+   ++KA L   ++   +            +  ++Y+  GLK YL   ++ 
Sbjct: 178 N-FSVTRLVNNLRAKAVLCPGLEITLTDK-------VNGKDYKWYYEDGLKDYLAEGVKG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
             +I  E FTG+                         SY N I T +GGTH +GLR  L 
Sbjct: 230 YPVIPEEPFTGEFLADTEA-ANWAVIWQPEGGEMITESYVNLIPTAQGGTHVNGLRQGLL 288

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R + +  DD+      +LSV I++P+FAGQTK +L S      V  
Sbjct: 289 EAMREFCEFRNLLPRGVKLTGDDVFDRCSYVLSVKIQDPQFAGQTKERLSSRQTAAFVSG 348

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L + P  A +L E  I  +  R+R    ++V RK       LPGKL DCS 
Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEVCIANAHRRMR--AAKKVVRKKVASGPALPGKLTDCSA 406

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TE+F VEGDSAGGSAKQAR+R  QAV+PLRGKILN     ++++  +Q++ D+  
Sbjct: 407 QDLSRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG    S    E LRY K+ I+ DAD DG HIA+LL   F +    L+E  H+++  PP
Sbjct: 467 ALGIDPDSDNL-EGLRYGKICILADADSDGLHIATLLCALFTRHFRALVEAGHIYVAMPP 525

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+RI  G +  YA D++ K  ILE   K  K KI + RFKGLGEM   QL+ET MD N R
Sbjct: 526 LYRIDCGKEVFYALDDDEKDGILERLSKK-KAKINVQRFKGLGEMNPLQLRETTMDPNTR 584

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            L+++ I+        T + ++ L+G K AD+R  ++Q      +
Sbjct: 585 RLVQLTIDDST----ATMEMMDMLLGKKRADDRRSWLQNNGDLAE 625


>gi|297581055|ref|ZP_06942980.1| topoisomerase IV [Vibrio cholerae RC385]
 gi|297534881|gb|EFH73717.1| topoisomerase IV [Vibrio cholerae RC385]
          Length = 626

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 247/645 (38%), Positives = 361/645 (55%), Gaps = 24/645 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AGYA+ I+V 
Sbjct: 2   TEQYNAGAIEVLNGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGYASKIQVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+    S +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R   ++   F  G  ++ L       R   GT + F PD K F   
Sbjct: 118 VVNALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSP 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL+   ++KA L   ++  ++      E         + +  GLK YL   ++ 
Sbjct: 178 N-FSVSRLINNLRAKAVLCPGLEIIFTDKVNNNE-------HRWLYEDGLKDYLAEGVKG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
            +L+  E FTG+   +     T               SY N I T +GGTH +GLR  L 
Sbjct: 230 YTLLPEEPFTGEFTAQTEA-ATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLL 288

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R + +  +D+      +LS+ +++P+FAGQTK +L S  +   V  
Sbjct: 289 DAMREFCEFRNLLPRGVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSG 348

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L + P  A +L E  I  +  R+R    ++V RK       LPGKL DC+ 
Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEVCIANAHSRMR--ASKKVVRKKIASGPALPGKLTDCTV 406

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
              + TELF+VEGDSAGGSAKQAR+R  QAV+PLRGKILN     ++++  +Q++ D+  
Sbjct: 407 QDLNRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG    +   E  LRY KV I+ DAD DG HIA+LL   F +    L++  H+++  PP
Sbjct: 467 ALGIDPDNDNLEA-LRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPP 525

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+RI  G +  YA D++ K+ +LE   +  K K+ + RFKGLGEM   QL+ET MD N R
Sbjct: 526 LYRIDCGKEVFYALDDQEKEGVLERLSQK-KAKVNVQRFKGLGEMNPLQLRETTMDPNTR 584

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            L+++ I+      + T + ++ L+G K AD+R  ++Q      +
Sbjct: 585 RLVQLTIDD----AEATDEMMDMLLGKKRADDRRAWLQRNGDMAE 625


>gi|161506253|ref|YP_001573365.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160867600|gb|ABX24223.1| hypothetical protein SARI_04448 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 630

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 250/650 (38%), Positives = 367/650 (56%), Gaps = 27/650 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + VTV R   I++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVTVRRDGQIYNIAFENGEKVQDLQVTGTCGKRNTGTSVHFWPD-ESFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RLL + ++KA L   V+  +  +   +E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLLHVLKAKAVLCPGVEITFKDEVNNSE-------QRWCYQDGLNDYLGEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G    +      V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LPTLPEKPFIGNFNGETE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A +L E  I  ++ RLR    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFSLWLNQNVQAAEQLAEMAIASAQRRLR--AAKKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVKNGHVYVAL 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA  EE K  +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 524 PPLYRIDLGKEVYYALTEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDVG 685
            R L+++ I+      + T   ++ L+  K +++R  ++QE+    D + 
Sbjct: 583 TRRLVQLTISD--EDDQRTNAMMDMLLAKKRSEDRRNWLQEKGDLAD-LD 629


>gi|16761956|ref|NP_457573.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16766481|ref|NP_462096.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|29143443|ref|NP_806785.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56415122|ref|YP_152197.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62181695|ref|YP_218112.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161616170|ref|YP_001590135.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167551906|ref|ZP_02345659.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167990269|ref|ZP_02571369.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168231780|ref|ZP_02656838.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168243007|ref|ZP_02667939.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168262861|ref|ZP_02684834.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168463611|ref|ZP_02697528.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168819756|ref|ZP_02831756.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194443762|ref|YP_002042448.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194450180|ref|YP_002047178.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194468478|ref|ZP_03074462.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197250406|ref|YP_002148108.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197262850|ref|ZP_03162924.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197364051|ref|YP_002143688.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|198243780|ref|YP_002217161.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200388424|ref|ZP_03215036.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204928305|ref|ZP_03219505.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205354097|ref|YP_002227898.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207858440|ref|YP_002245091.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|213424345|ref|ZP_03357169.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213579856|ref|ZP_03361682.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213645890|ref|ZP_03375943.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|224584982|ref|YP_002638781.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238909982|ref|ZP_04653819.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|61229760|sp|P0A2I5|PARE_SALTY RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|61229761|sp|P0A2I6|PARE_SALTI RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|25292821|pir||AE0889 topoisomerase IV chain B [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16421737|gb|AAL22055.1| DNA topoisomerase IV, subunit B [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16504258|emb|CAD03013.1| topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29139077|gb|AAO70645.1| topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56129379|gb|AAV78885.1| topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62129328|gb|AAX67031.1| DNA topoisomerase IV, subunit B [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|149693021|emb|CAK55545.1| topoisomerase IV subunit [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|149693023|emb|CAK55546.1| topoisomerase IV subunit [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|161365534|gb|ABX69302.1| hypothetical protein SPAB_03972 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402425|gb|ACF62647.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194408484|gb|ACF68703.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194454842|gb|EDX43681.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|195633404|gb|EDX51818.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197095528|emb|CAR61093.1| topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197214109|gb|ACH51506.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197241105|gb|EDY23725.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197938296|gb|ACH75629.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199605522|gb|EDZ04067.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204322627|gb|EDZ07824.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205273878|emb|CAR38879.1| topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205323370|gb|EDZ11209.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205331076|gb|EDZ17840.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205333857|gb|EDZ20621.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205337845|gb|EDZ24609.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205343316|gb|EDZ30080.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205348386|gb|EDZ35017.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206710243|emb|CAR34600.1| topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224469510|gb|ACN47340.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261248311|emb|CBG26148.1| topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267995372|gb|ACY90257.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159735|emb|CBW19254.1| topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|320087633|emb|CBY97397.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321225861|gb|EFX50915.1| Topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322613584|gb|EFY10525.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322621176|gb|EFY18034.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322624239|gb|EFY21073.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322628023|gb|EFY24812.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322633140|gb|EFY29882.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322636282|gb|EFY32990.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322643535|gb|EFY40096.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322647448|gb|EFY43937.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648633|gb|EFY45080.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322653685|gb|EFY50011.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322657793|gb|EFY54061.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663894|gb|EFY60093.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669093|gb|EFY65244.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322672912|gb|EFY69019.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678097|gb|EFY74160.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681273|gb|EFY77306.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322687796|gb|EFY83763.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322716181|gb|EFZ07752.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323131542|gb|ADX18972.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323195608|gb|EFZ80785.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323199710|gb|EFZ84800.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323202541|gb|EFZ87581.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323207970|gb|EFZ92916.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323212478|gb|EFZ97295.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323215040|gb|EFZ99788.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222770|gb|EGA07135.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323224148|gb|EGA08441.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323230472|gb|EGA14590.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235176|gb|EGA19262.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239216|gb|EGA23266.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244426|gb|EGA28432.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323247042|gb|EGA31008.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323253476|gb|EGA37305.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323256218|gb|EGA39954.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323267298|gb|EGA50782.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269299|gb|EGA52754.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|326624937|gb|EGE31282.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326629215|gb|EGE35558.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 630

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 248/650 (38%), Positives = 367/650 (56%), Gaps = 27/650 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + VTV R   +++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVTVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ESFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL+ + ++KA L   V+  +  +   +E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLMHVLKAKAVLCPGVEITFKDEVNNSE-------QRWCYQDGLNDYLGEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G    +      V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LPTLPEKPFIGNFNGETE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A +L E  I  ++ RLR    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFSLWLNQNVQAAEQLAEMAIASAQRRLR--AAKKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVKNGHVYVAL 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA  EE K  +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 524 PPLYRIDLGKEVYYALTEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDVG 685
            R L+++ I+      + T   ++ L+  K +++R  ++QE+    D + 
Sbjct: 583 TRRLVQLTISD--EDDQRTNAMMDMLLAKKRSEDRRNWLQEKGDLAD-LD 629


>gi|1405461|emb|CAA97606.1| GrlB [Bacillus subtilis subsp. subtilis str. 168]
          Length = 627

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 237/630 (37%), Positives = 354/630 (56%), Gaps = 36/630 (5%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIG TD + LHHL  E++DN++DEV+AG+ + I V +  +  ++V D GRG+P   H  
Sbjct: 1   MYIGSTDARGLHHLVYEIVDNSVDEVLAGHGDHIIVKIHKDNSISVQDRGRGMPTGMHK- 59

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
              K T E+ILT LHAGGKF    Y+ SGGLHGVG SVVNALS+ L VT+ R   ++ Q+
Sbjct: 60  -LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSEWLTVTIERDGFVYQQR 118

Query: 184 FSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
           F  G  P++ LEK  K +   GT   F+PDP +F     ++   L +  +  A+L   +K
Sbjct: 119 FENGGKPVTSLEKIGKTKK-TGTLTHFKPDPTMFSTTT-YNFETLSERLRESAFLLKGLK 176

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
                ++         ++E FY+  G++ ++    E + ++ SE+ + + E    H   V
Sbjct: 177 IELIDER-------NDQREVFYYENGIEAFVAYLNEEKDVL-SEVVSFEGE---HHSIEV 225

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIIS 359
           ++A  + +     I S+ N + T +GGTHESG + A+TR   +YA       ++  ++  
Sbjct: 226 DFAFQFNDGYSENILSFVNNVRTKDGGTHESGAKTAMTRAFNEYARKVALLKEKDKNLEG 285

Query: 360 DDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
            D+      I+SV I E   +F GQTK KL + +A+  V+  + +   ++L +N   AT 
Sbjct: 286 TDIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAVDAIVSEQLAYFLEENRDTATL 345

Query: 418 LLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLADCSQNIAHGTELFIVEGDSA 474
           L++  I+ S+ R   RK RE  R    RK     L GKL           EL++VEGDSA
Sbjct: 346 LVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLTPAGSRNPAKNELYLVEGDSA 405

Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
           GGSAKQ R+R  QAVLPLRGK++N   A    I  N++I  ++ A+G    + +  +D+ 
Sbjct: 406 GGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIHAIGGGVGADFSIDDIN 465

Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG--TKSV--Y 590
           Y+K+IIMTDAD DGAHI  LLLTFFY+ M  LIE   +F+  PPL+++++G   K +  Y
Sbjct: 466 YDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFIALPPLYKVSKGSGKKEIIEY 525

Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
           A  +E    +L++  K       I R+KGLGEM A QL ET M+   RTL+RV+I+    
Sbjct: 526 AWSDEEMGDVLKKVGK----GYTIQRYKGLGEMNADQLWETTMNPESRTLVRVKIDD--- 578

Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASF 680
                +  +  LMG K + R K+I++  +F
Sbjct: 579 -AARVERRVTTLMGDKVEPRRKWIEKNVAF 607


>gi|171920400|ref|ZP_02931723.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|171902839|gb|EDT49128.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
          Length = 642

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 244/655 (37%), Positives = 353/655 (53%), Gaps = 33/655 (5%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ YD ++I+ILEGLE VR RPGMYIG T    LHHL  E++DN++DEV+   A  I V 
Sbjct: 2   ANKYDGNAIKILEGLEAVRKRPGMYIGSTSSTGLHHLIWEIVDNSIDEVMNANAKNINVI 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  ++V+D+GRGIPV+ + +    ST+E +LT LHAGGKFD S Y+ +GGLHGVG S
Sbjct: 62  LHEDNSISVLDDGRGIPVDINSQ-TKISTVETVLTVLHAGGKFDESAYKTAGGLHGVGSS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  L   V R   I+  KF  G  +    K      K GT I F PDP IF +  
Sbjct: 121 VVNALSSWLICEVYRDQKIYQAKFINGGHIDQSLKVIGTTKKTGTLIHFLPDPLIFKNLV 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F+   + +      +L   +K  +       E     +K EF    GL  +++   E +
Sbjct: 181 -FNPNIIKERLHESTFLIKDLKIIF-------EDKINKKKYEFINNQGLIDFIKFINEAK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHESGLRVALT 339
              S  I+     +   ++  VE A  + ++ N  + S+ N++ T+EGG HE+  + ALT
Sbjct: 233 KTFSDVIYF----RSNINKIEVEIAFQYSDQNNEIMVSFANSVKTNEGGVHENAFKNALT 288

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395
             +  YA       ++  ++  DD+      ++S+ I E    + GQTK KL + +A   
Sbjct: 289 SVVNNYARKHNLLKEKDKNLEGDDIREGLSSVISLRIPESLISYEGQTKNKLFTPEANEA 348

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK--LRLPGKL 453
           V+  + D F  +L +N  +A  L+   I   + +L  ++ RE  +K    K    + GKL
Sbjct: 349 VKKTIEDNFSFWLEENKTQALDLVNRAILARDAKLAAKRAREETKKVKKIKEERGMGGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
                      ELF+VEGDSAGGSAK  RN+  QA+LPLRGK+LNV  A    +  N++I
Sbjct: 409 TPAQSKDPTLNELFLVEGDSAGGSAKLGRNKKYQAILPLRGKVLNVLKARLVDVLKNEEI 468

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             +   LG    +++  + L+Y K+IIMTDAD DG+HI  LLLT FY+ M  LIE  +++
Sbjct: 469 ASIFTCLGTGIGAEFDLKKLKYHKIIIMTDADTDGSHIQVLLLTLFYRFMRPLIENGNIY 528

Query: 574 LISPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +  PPL+++T     K  YA D+    ++ +E K       EI R+KGLGEM A QL ET
Sbjct: 529 IALPPLYKLTNKNNKKFFYAWDDVELDQLKKEQKN-----YEIQRYKGLGEMNADQLFET 583

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF--IDDV 684
            MD N R LL++ IN  L      +  IN LMG     R ++I     F  ID++
Sbjct: 584 TMDPNNRLLLKININDIL----QAERQINTLMGNDVSIRKQWIDNNIDFSVIDEL 634


>gi|15642428|ref|NP_232061.1| DNA topoisomerase IV subunit B [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121591635|ref|ZP_01678879.1| topoisomerase IV, subunit B [Vibrio cholerae 2740-80]
 gi|147674220|ref|YP_001217932.1| DNA topoisomerase IV subunit B [Vibrio cholerae O395]
 gi|153214083|ref|ZP_01949217.1| topoisomerase IV, subunit B [Vibrio cholerae 1587]
 gi|153820156|ref|ZP_01972823.1| topoisomerase IV, subunit B [Vibrio cholerae NCTC 8457]
 gi|153827239|ref|ZP_01979906.1| topoisomerase IV, subunit B [Vibrio cholerae MZO-2]
 gi|227082552|ref|YP_002811103.1| topoisomerase IV, subunit B [Vibrio cholerae M66-2]
 gi|229507509|ref|ZP_04397014.1| topoisomerase IV subunit B [Vibrio cholerae BX 330286]
 gi|229512295|ref|ZP_04401774.1| topoisomerase IV subunit B [Vibrio cholerae B33]
 gi|229514057|ref|ZP_04403519.1| topoisomerase IV subunit B [Vibrio cholerae TMA 21]
 gi|229519432|ref|ZP_04408875.1| topoisomerase IV subunit B [Vibrio cholerae RC9]
 gi|229521258|ref|ZP_04410678.1| topoisomerase IV subunit B [Vibrio cholerae TM 11079-80]
 gi|229527037|ref|ZP_04416432.1| topoisomerase IV subunit B [Vibrio cholerae 12129(1)]
 gi|229607015|ref|YP_002877663.1| DNA topoisomerase IV subunit B [Vibrio cholerae MJ-1236]
 gi|254849555|ref|ZP_05238905.1| topoisomerase IV [Vibrio cholerae MO10]
 gi|298500211|ref|ZP_07010016.1| DNA topoisomerase IV, B subunit [Vibrio cholerae MAK 757]
 gi|9657006|gb|AAF95574.1| topoisomerase IV, subunit B [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121546506|gb|EAX56719.1| topoisomerase IV, subunit B [Vibrio cholerae 2740-80]
 gi|124115509|gb|EAY34329.1| topoisomerase IV, subunit B [Vibrio cholerae 1587]
 gi|126509296|gb|EAZ71890.1| topoisomerase IV, subunit B [Vibrio cholerae NCTC 8457]
 gi|146316103|gb|ABQ20642.1| topoisomerase IV, subunit B [Vibrio cholerae O395]
 gi|149738853|gb|EDM53189.1| topoisomerase IV, subunit B [Vibrio cholerae MZO-2]
 gi|227010440|gb|ACP06652.1| topoisomerase IV, subunit B [Vibrio cholerae M66-2]
 gi|227014323|gb|ACP10533.1| topoisomerase IV, subunit B [Vibrio cholerae O395]
 gi|229335434|gb|EEO00916.1| topoisomerase IV subunit B [Vibrio cholerae 12129(1)]
 gi|229341790|gb|EEO06792.1| topoisomerase IV subunit B [Vibrio cholerae TM 11079-80]
 gi|229344121|gb|EEO09096.1| topoisomerase IV subunit B [Vibrio cholerae RC9]
 gi|229349238|gb|EEO14195.1| topoisomerase IV subunit B [Vibrio cholerae TMA 21]
 gi|229352260|gb|EEO17201.1| topoisomerase IV subunit B [Vibrio cholerae B33]
 gi|229355014|gb|EEO19935.1| topoisomerase IV subunit B [Vibrio cholerae BX 330286]
 gi|229369670|gb|ACQ60093.1| topoisomerase IV subunit B [Vibrio cholerae MJ-1236]
 gi|254845260|gb|EET23674.1| topoisomerase IV [Vibrio cholerae MO10]
 gi|297540904|gb|EFH76958.1| DNA topoisomerase IV, B subunit [Vibrio cholerae MAK 757]
          Length = 626

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 248/645 (38%), Positives = 361/645 (55%), Gaps = 24/645 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AGYA+ I+V 
Sbjct: 2   TEQYNAGAIEVLNGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGYASKIQVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+    S +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R   ++   F  G  ++ L       R   GT + F PD K F   
Sbjct: 118 VVNALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSP 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL+   ++KA L   ++  ++      E         + +  GLK YL   ++ 
Sbjct: 178 N-FSVSRLINNLRAKAVLCPGLEIIFTDKVNNNE-------HRWLYEDGLKDYLAEGVKG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
            +L+  E FTG+   +     T               SY N I T +GGTH +GLR  L 
Sbjct: 230 YTLLPEEPFTGEFTAQTEA-ATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLL 288

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R + +  +D+      +LS+ +++P+FAGQTK +L S  +   V  
Sbjct: 289 DAMREFCEFRNLLPRGVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSG 348

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L + P  A +L E  I  +  R+R    ++V RK       LPGKL DC+ 
Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEVCIANAHSRMR--ASKKVVRKKIASGPALPGKLTDCTV 406

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
              + TELF+VEGDSAGGSAKQAR+R  QAV+PLRGKILN     ++++  +Q++ D+  
Sbjct: 407 QDLNRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG    S   E  LRY KV I+ DAD DG HIA+LL   F +    L++  H+++  PP
Sbjct: 467 ALGIDPDSDNLEA-LRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPP 525

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+RI  G +  YA D++ K+ +LE   +  K K+ + RFKGLGEM   QL+ET MD N R
Sbjct: 526 LYRIDCGKEVFYALDDQEKEGVLERLSQK-KAKVNVQRFKGLGEMNPLQLRETTMDPNTR 584

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            L+++ I+      + T + ++ L+G K AD+R  ++Q      +
Sbjct: 585 RLVQLTIDD----AEATDEMMDMLLGKKRADDRRAWLQRNGDMAE 625


>gi|110004707|emb|CAK99042.1| dna topoisomerase iv subunit b protein [Spiroplasma citri]
          Length = 645

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 250/655 (38%), Positives = 351/655 (53%), Gaps = 30/655 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +  +  YD SSI+ILEGL+ VR RPGMYIG TD + LHHL  E+IDN++DE +AGY 
Sbjct: 1   MSIEDKTLKYDESSIQILEGLDAVRKRPGMYIGSTDVRGLHHLVWEIIDNSIDEALAGYC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           N I++ +  N  + V DNGRG+P   H     KST E+I + LHAGGKF    Y+ +GGL
Sbjct: 61  NEIDIIIYKNNAIMVADNGRGVPTGVH--SSGKSTPEVIFSVLHAGGKFGGDGYKTAGGL 118

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS    VT+ R + ++S KF+ G  +     K     K GT +TF PD K
Sbjct: 119 HGVGSSVVNALSATFDVTIYRDHKVWSIKFANGGQVKEPLTKIGTTTKTGTTVTFLPDHK 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     F  + + +  +  A+L+  VK   +  +         +K  + F  GL+ ++ 
Sbjct: 179 IFKV-IDFSFSTISERIRESAFLNSGVKLTLTDQR-------TDKKVSYLFNNGLEEFIT 230

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGL 334
              E++  I+  I     EK+      ++++    E N  + S+ N + T EGG+H  G 
Sbjct: 231 YMNEDKKSITPIIMLKGVEKQIEVEIALQYST---EFNENLLSFANNVKTSEGGSHVVGF 287

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390
           R  LT+ I  YA       ++  ++ S D       I+SV I E   ++ GQTK KL + 
Sbjct: 288 RTGLTKVINDYARKEGLLKEKDKNLDSVDTREGLTTIVSVKIPENLIQYEGQTKGKLGTY 347

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL- 449
           +A+  VE  +   F  +L +N   A  ++E  +     R   RK RE  R +  R     
Sbjct: 348 EARVAVETIVSKQFGFWLTENKTNAYTIIEKALLARNVREEARKAREAARNSKKRGNSDR 407

Query: 450 --PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
              GKL           E+F+VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  + +
Sbjct: 408 LLTGKLTPAQNRNKFNNEIFLVEGDSAGGSAKLGRDRRFQAILPLRGKVINAEKAKLQDL 467

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
            NN++I  ++ A+G    + +   D  Y KVIIMTDAD DGAHI +LLLTFFY+ M  LI
Sbjct: 468 MNNEEINVMINAIGAGVGNGFDINDANYGKVIIMTDADTDGAHIQTLLLTFFYRYMRPLI 527

Query: 568 EQKHLFLISPPLFRI--TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           E   ++L  PPLF+I  T+     YA DE   +  L +F     GK E+ R+KGLGEM A
Sbjct: 528 ENHRVYLALPPLFKITSTKNKHIEYAWDETELKNKLSQFH----GKFELQRYKGLGEMNA 583

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            QL ET M+   R L+ V I+  +      +  I  LMG  A +R  +I E   F
Sbjct: 584 EQLWETTMNPQTRQLILVTIDDAVM----AERRIVTLMGDDAKKRKYWIDENVKF 634


>gi|269137554|ref|YP_003294254.1| DNA topoisomerase IV subunit B [Edwardsiella tarda EIB202]
 gi|238551759|gb|ACR44351.1| topoisomerase IV [Edwardsiella tarda]
 gi|267983214|gb|ACY83043.1| DNA topoisomerase IV subunit B [Edwardsiella tarda EIB202]
 gi|304557627|gb|ADM40291.1| Topoisomerase IV subunit B [Edwardsiella tarda FL6-60]
          Length = 631

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 254/649 (39%), Positives = 362/649 (55%), Gaps = 27/649 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  IEV L
Sbjct: 4   SSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHATRIEVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V+DNGRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGISV
Sbjct: 61  HPDQSLEVIDNGRGMPVDIHPE-EGVPAIELILCRLHAGGKFSNKNYQFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + V+V R   I+   F  G  +  L     V R   GT + F PD + F    
Sbjct: 120 VNALSRRVEVSVRRDGQIYQMAFENGEKVEDLHVSGTVGRRNTGTSVHFWPDAQFFDSAR 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L   V+  +      +E       + + +  GL  YL   +   
Sbjct: 180 -FSVSRLTHLLKAKAVLCPGVEILFRDLVNGSE-------QRWCYQDGLTDYLMESVNGL 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +  + FTG           V+WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 VTLPEQPFTGTFASDTE---AVDWALLWLPEGGELLTESYVNLIPTPQGGTHVNGLRQGL 288

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E      R + + +DD+      +LSV +++P+FAGQTK +L S      V 
Sbjct: 289 LDAMREFCEFRNLLPRGVKLTADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             ++D F  +L QN   A  L E  I  ++ R+R    ++V RK       LPGKLADCS
Sbjct: 349 GVVKDAFSLWLNQNVQSAELLAELAINSAQRRMR--AAKKVVRKKLTSGPALPGKLADCS 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
               + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+ 
Sbjct: 407 AQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  P
Sbjct: 467 VAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRPLVQAGHVYVAMP 525

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G +  YA  EE K  +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N 
Sbjct: 526 PLYRIDLGKEVFYALSEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPLQLRETTLDPNT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDVG 685
           R L+++ I      ++ T   ++ L+  K A++R  ++QE  +  + + 
Sbjct: 585 RRLVQLTIED--EDMERTVAVMDMLLAKKRAEDRRNWLQENGNLAE-LD 630


>gi|312885199|ref|ZP_07744878.1| DNA topoisomerase IV subunit B [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367139|gb|EFP94712.1| DNA topoisomerase IV subunit B [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 626

 Score =  554 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 244/644 (37%), Positives = 354/644 (54%), Gaps = 24/644 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + Y+A  + +LEGL+PVR RPGMY   T+ +  +HL  EVIDN++DE +AG+A  I V L
Sbjct: 3   EQYNAKDLSVLEGLDPVRHRPGMY---TETERPNHLAQEVIDNSVDEALAGHAKKIRVIL 59

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L VVD+GRG+PV+ HP+    S +E+I+T LHAGGKF N  Y+ SGGLHGVGISV
Sbjct: 60  HEDQSLEVVDDGRGMPVDIHPE-KGISGVELIMTKLHAGGKFSNDNYKFSGGLHGVGISV 118

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKA 220
           VNALS  + VTV R   +    F  G  ++ L           GT + F PD K F    
Sbjct: 119 VNALSRRVEVTVKRDGQVHEIAFEGGDAVTELSVTGTCGMRNTGTSVHFWPDAKYFDSP- 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F + RL+   ++KA L   ++  +S      E        ++++  GLK YL   ++  
Sbjct: 178 KFSSLRLVNNLRAKAVLCPGLEIIFSDKVNNEE-------HKWFYEDGLKDYLAEGVKGY 230

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
            ++    + G    +     T               SY N + T +GGTH +GLR  L  
Sbjct: 231 EVLPDLPYIGSFSAESEM-ATWAVIWQPEGGEMITESYVNLVPTKQGGTHVNGLRQGLLD 289

Query: 341 GIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
            ++++ E      R + +  DD+      +LSV +++P+FAGQTK +L S      V   
Sbjct: 290 AMREFCEFRNLLPRGVKLTGDDIFDRCSYVLSVKMQDPQFAGQTKERLSSRQTAAFVSGV 349

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
           ++D F  +L + P  A +L E  I  +  R+R    ++V RK       LPGKL DCS  
Sbjct: 350 VKDAFSLWLNETPQLAEQLAEVCIANAHRRMR--ASKKVVRKKVASGPALPGKLTDCSVQ 407

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
             + TE+F VEGDSAGGSAKQAR+R  QAV+PLRGKILN     ++++  +Q++ D+  A
Sbjct: 408 DLNRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVA 467

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           LG    +      LRY K+ I+ DAD DG HIA+LL   F +    L+E  H+++  PPL
Sbjct: 468 LGIDPDNDDL-SGLRYGKICILADADSDGLHIATLLCALFTKHFRALVEAGHIYVAMPPL 526

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           +RI  G +  YA D++ K+ +LE   K  K KI + RFKGLGEM   QL+ET MD N R 
Sbjct: 527 YRIDCGKEVFYALDDDEKEGVLERLSKK-KAKINVQRFKGLGEMNPLQLRETTMDPNTRR 585

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           L+++ I+      + T + ++ L+G K AD+R  ++Q      +
Sbjct: 586 LVQLTIDD----RESTIEMMDMLLGKKRADDRRSWLQANGDMAE 625


>gi|154238|gb|AAA27182.1| topoisomerase IV subunit E [Salmonella enterica subsp. enterica
           serovar Typhimurium]
          Length = 630

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 248/650 (38%), Positives = 366/650 (56%), Gaps = 27/650 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + VTV R   +++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVTVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ESFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL+ + ++KA L   V+  +  +   +E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLMHVLKAKAVLCPGVEITFKDEVNNSE-------QRWCYQDGLNDYLGEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G    +      V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LPTLPEKPFIGNFNGETE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R   + ++D+      +LSV +++P+FAGQ K +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGQKLSAEDIWDRCAYVLSVKMQDPQFAGQPKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A +L E  I  ++ RLR R  ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFSLWLNQNVQAAEQLAEMAIASAQRRLRAR--KKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVKNGHVYVAL 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA  EE K  +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 524 PPLYRIDLGKEVYYALTEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDVG 685
            R L+++ I+      + T   ++ L+  K +++R  ++QE+    D + 
Sbjct: 583 TRRLVQLTISD--EDDQRTNAMMDMLLAKKRSEDRRNWLQEKGDLAD-LD 629


>gi|237807171|ref|YP_002891611.1| DNA topoisomerase IV subunit B [Tolumonas auensis DSM 9187]
 gi|237499432|gb|ACQ92025.1| DNA topoisomerase IV, B subunit [Tolumonas auensis DSM 9187]
          Length = 630

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 247/648 (38%), Positives = 366/648 (56%), Gaps = 27/648 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y A SI +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  I+V 
Sbjct: 2   TQAYTAESIEVLNGLEPVRRRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHARRIDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V D+GRG+PV+ HP+      +E+I+  LHAGGKF NS Y+ SGGLHGVGIS
Sbjct: 59  LHDDQSLEVTDDGRGMPVDIHPE-EGVPAVELIMCKLHAGGKFSNSNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + VTV R   ++   F +G  ++ L       +   GTR+ F PD K F   
Sbjct: 118 VVNALSRRVEVTVRRDGNVYEMAFEQGDKVADLTITGTCGKRNTGTRVKFWPDAKYFDSP 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F A+RL+ + ++KA L   +   +       E     +  ++ +  GL+ YL   L++
Sbjct: 178 -KFSASRLVHILKAKAVLCPGLTIHF-------EDRVNQQVYDWCYQDGLRDYLLDNLKD 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + FTG+     +    V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 VIRLPEQPFTGQFSADNS---AVDWALCWLPEGGELISESYVNLIPTVQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + +  DD+      ILS+ +++P+FAGQTK +L S  +   V
Sbjct: 287 LLDAMREFCEFRNLLPRGVKLTPDDIWDRCAYILSIKMQDPQFAGQTKERLSSRQSAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L  N   A +L E  I  ++ RLR    + V RK   +   LPGKL DC
Sbjct: 347 SGIVKDAFSLWLNSNIELAEQLAELCINSAQRRLR--AAKTVVRKKITQGPALPGKLTDC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           + +     ELF+VEGDSAGGSAKQAR R  QA++PLRGKILN     + ++  +Q++  +
Sbjct: 405 NCSDPMQGELFLVEGDSAGGSAKQAREREFQAIMPLRGKILNTWEVDASEVLASQEVHHI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L+E+ H+++  
Sbjct: 465 SIAVGMDPDSDDL-SGLRYGKICILADADSDGLHIATLLCALFVKHFRPLVEKGHVYVAM 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK-IEISRFKGLGEMLASQLKETAMDA 635
           PPLFRI  G +  YA DE+ K+ +L+  K   K    +++RFKGLGEM   QL+ET MD 
Sbjct: 524 PPLFRIDLGKEVYYALDEDEKEGVLQRLKAEKKRGTPQVTRFKGLGEMNPKQLRETTMDP 583

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           N R L+++ ++ +    ++T   ++ L+  K + +R ++++ + +  D
Sbjct: 584 NTRRLVQLTLDDE---TEETMQLMDMLLAKKRSGDRREWLESKGNLAD 628


>gi|220935291|ref|YP_002514190.1| DNA topoisomerase (ATP-hydrolyzing) [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996601|gb|ACL73203.1| DNA topoisomerase (ATP-hydrolyzing) [Thioalkalivibrio sp. HL-EbGR7]
          Length = 640

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 251/648 (38%), Positives = 372/648 (57%), Gaps = 28/648 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +++Y+A+ I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE IAG+A  I+V 
Sbjct: 12  TNSYNAADIEVLSGLDPVRKRPGMY---TDTTRPNHLAQEVIDNSVDEAIAGHAKKIDVV 68

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L+V D+GRG+PV+ HPK   +  +E+IL+TLHAGGKF    Y+ SGGLHGVG+S
Sbjct: 69  LHKDNSLSVADDGRGMPVDMHPK-EKRPGVEVILSTLHAGGKFSGKNYQFSGGLHGVGVS 127

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  L V + R    ++  F+ G   + LE   +V R   GT + F PDPK F   
Sbjct: 128 VVNALSRHLEVWIKRDGREYNMAFADGHKKTDLEVVGEVGRRNTGTTLRFWPDPKYFDSP 187

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F   RL  + ++KA L   +   +  +          E+ ++ +  GL+ YL   ++ 
Sbjct: 188 -KFSVPRLKHILRAKAVLCPGLAVSFYDE-------VTGERVDWCYQAGLRDYLVEAVDG 239

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVA 337
              +  E F G            +WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 240 FERVPEEPFMGSI---AGQTEAADWAVVWLPEGGEAVAESYVNLIPTAQGGTHVNGLRTG 296

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           LT  ++++ E      R + +  +D+      ILS  +++P+FAGQTK +L S +A   V
Sbjct: 297 LTDAVREFCEFRNLLPRGVKLTPEDVWDRVAYILSFKMQDPQFAGQTKERLSSREAAPFV 356

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L Q+P    ++ E  I  ++ R R    ++V RK   +   LPGKLADC
Sbjct: 357 SGVVKDAFSLWLNQHPAAGERIAELAINSAQRRAR--AGKKVVRKKLTQGPTLPGKLADC 414

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +      TELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     ++++  +Q+I D+
Sbjct: 415 ASQDLARTELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNAWEVEADQVLGSQEIHDI 474

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    +    +DLRY K+ I+ DAD DGAHIA+LL   F +    L+E+ H+++  
Sbjct: 475 SVAVGVEPGNTEL-KDLRYGKICILADADSDGAHIATLLCALFVRHFRPLVEKGHVYVAM 533

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDA 635
           PPLFRI  G +  YA DE  KQ +LE  +   K GK+ ++RFKGLGEM   QL+ET MD 
Sbjct: 534 PPLFRIDVGKEVFYALDEHEKQGVLERIEAEKKRGKVSVTRFKGLGEMNPLQLRETTMDP 593

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           + R L+++ ++    +  +T   ++ L+  K A +R  +++ +    +
Sbjct: 594 DTRRLVQLTVD----AGDETNTLLDMLLAKKRAADRKSWLESKGHLAE 637


>gi|163803900|ref|ZP_02197740.1| DNA topoisomerase IV subunit B [Vibrio sp. AND4]
 gi|159172299|gb|EDP57187.1| DNA topoisomerase IV subunit B [Vibrio sp. AND4]
          Length = 626

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 250/645 (38%), Positives = 357/645 (55%), Gaps = 24/645 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A+ ++V 
Sbjct: 2   TEQYNAGAIEVLNGLEPVRRRPGMY---TDTARPNHLGQEVIDNSVDEALAGHASKVQVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+    S +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + VTV R   ++   F  G  +S L       R  RGT + F PD K F   
Sbjct: 118 VVNALSKRVEVTVRRDGQVYEIAFEHGDKVSDLTVTGTCGRRNRGTSVHFWPDTKYFDSA 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F   RL+   ++KA L   ++  ++            +  ++Y+  GLK YL   ++ 
Sbjct: 178 N-FSVTRLVNNLRAKAVLCPGLEITFTDK-------VNNKDHKWYYEDGLKDYLAEGVKG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
             ++    FTG+   +                     SY N I T +GGTH +GLR  L 
Sbjct: 230 YPVLPEVPFTGEFSAETEA-ANWAVIWQPEGGEMITESYVNLIPTAQGGTHVNGLRQGLL 288

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R + +  DD+      +LS+ I++P+FAGQTK +L S      V  
Sbjct: 289 DAMREFCEFRNLLPRGVKLTGDDIFDRCSYVLSIKIQDPQFAGQTKERLSSRQTAAFVSG 348

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L + P  A +L E  I  +  R+R    ++V RK       LPGKL DCS 
Sbjct: 349 VVKDSFSLWLNEKPQLAEQLAEVCIANAHRRMR--ASKKVVRKKVASGPALPGKLTDCSV 406

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
              + TE+F VEGDSAGGSAKQAR+R  QAV+PLRGKILN     ++++  +Q++ D+  
Sbjct: 407 QDLNRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG    S    + LRY K+ I+ DAD DG HIA+LL   F +    L+E  H+++  PP
Sbjct: 467 ALGIDPDSDNL-DSLRYGKICILADADSDGLHIATLLCALFTRHFRALVEAGHIYVAMPP 525

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+RI  G +  YA D+  K+ ILE   K  K KI + RFKGLGEM   QL+ET MD N R
Sbjct: 526 LYRIDCGKEVFYALDDGEKEGILERLSKK-KAKINVQRFKGLGEMNPLQLRETTMDPNTR 584

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            L+++ I+        T + ++ L+G K AD+R  ++Q      +
Sbjct: 585 RLVQLTIDD----SAATMEMMDMLLGKKRADDRRSWLQSNGDMAE 625


>gi|254284215|ref|ZP_04959183.1| DNA topoisomerase IV, B subunit [gamma proteobacterium NOR51-B]
 gi|219680418|gb|EED36767.1| DNA topoisomerase IV, B subunit [gamma proteobacterium NOR51-B]
          Length = 629

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 252/647 (38%), Positives = 362/647 (55%), Gaps = 28/647 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A+ I+V+L
Sbjct: 2   SQYNADAIEVLTGLEPVRKRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHADQIDVTL 58

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G +TVVDNGRG+PV+ HP+      +E+IL+TLHAGGKF ++ Y+ SGGLHGVG+SV
Sbjct: 59  HADGSITVVDNGRGMPVDQHPEL-GLPGVEVILSTLHAGGKFSDTNYQFSGGLHGVGVSV 117

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  L VT+ R   I   +F  G     L   +   +   GT + F PDP  F    
Sbjct: 118 VNALSTYLEVTIRRDGQIHRMRFEGGDKTGDLAPIDTCGKRNTGTGLRFLPDPSYFDSAH 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F   RL  + ++KA L   ++     +K+  +         +Y+  G+  YL     + 
Sbjct: 178 -FSLPRLNHVLRAKAVLCPGLRVTLFDEKKNEKAE-------WYYEDGIADYLADATIDY 229

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVAL 338
            +I  + FTG           V+WAI W  E  E+   SY N I T +GGTH +GLR  L
Sbjct: 230 PVIPEKPFTGSFSGPTD---AVDWAIQWLPEGGEVLAESYVNLIPTAQGGTHVNGLRSGL 286

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ EL     R + +  +D+      +LS  + +P+F+GQTK +L S +A   V 
Sbjct: 287 LEAMREFCELRNLLPRGVKLTPEDIWDRCAYLLSSKLADPQFSGQTKERLSSREAAGFVS 346

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
              +D F  +L Q+  +A  L E  I R++ RLR    ++V RK       LPGKLADC+
Sbjct: 347 GVAKDAFSLWLNQHTGDAELLAELCINRAQARLR--SAKKVVRKKVTSGPALPGKLADCT 404

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                  ELF+VEGDSAGGSAKQAR+R  QA+LPLRGKILN     S++I  +Q++ ++ 
Sbjct: 405 TEDPARGELFLVEGDSAGGSAKQARDREFQAILPLRGKILNTWEIDSQEILASQEVHNIS 464

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG    S    + LRY K+ I+ DAD DG HIA+L+   F +    L+   H+F+  P
Sbjct: 465 VALGIDPGSDDL-DGLRYHKICILADADSDGLHIATLICALFLRHFRPLVRAGHVFVAMP 523

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDAN 636
           PL+RI  G +  YA DE  K  +LE  +    + K  + RFKGLGEM   QL+ET MD +
Sbjct: 524 PLYRIDVGKEVHYALDESEKNGVLERLQAEKSRAKPNVQRFKGLGEMNPPQLRETTMDPD 583

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ +     S  DT  + + L+  K A +R  +++ +    +
Sbjct: 584 TRRLVQLVLE----SDDDTNSTFDMLLAKKRAGDRKSWLESKGDLAE 626


>gi|296104690|ref|YP_003614836.1| DNA topoisomerase IV subunit B [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295059149|gb|ADF63887.1| DNA topoisomerase IV subunit B [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 630

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 247/647 (38%), Positives = 361/647 (55%), Gaps = 26/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R   +++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ESFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL  + ++KA L   V+  +  +    E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLTHLLKAKAVLCPGVEITFKDNVNNTE-------QSWCYADGLNDYLCEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G           V+WA+ W  E  E    SY N I T  GGTH +GLR  
Sbjct: 230 LPTLPEKPFVGNFTGDTE---AVDWALLWLPEGGELLTESYVNLIPTMLGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A  L E  I  ++ RLR    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFTLWLNQNVQAAEMLAEMAISSAQRRLR--AAKKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S+     LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 465 SVAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKNGHVYVAL 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA  EE K  +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 524 PPLYRIDLGKEVYYALTEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ I+      + T   ++ L+  K +++R  ++QE+    D
Sbjct: 583 TRRLVQLTISD--EDEQQTNAMMDMLLAKKRSEDRRNWLQEKGDMAD 627


>gi|269960215|ref|ZP_06174590.1| DNA topoisomerase 4 subunit B [Vibrio harveyi 1DA3]
 gi|269835022|gb|EEZ89106.1| DNA topoisomerase 4 subunit B [Vibrio harveyi 1DA3]
          Length = 626

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 250/645 (38%), Positives = 359/645 (55%), Gaps = 24/645 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A+ ++V 
Sbjct: 2   TEQYNAGAIEVLNGLEPVRRRPGMY---TDTARPNHLGQEVIDNSVDEALAGHASKVQVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+    S +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + VTV R   ++   F  G  +S L       R  RGT + F PD K F   
Sbjct: 118 VVNALSKRVEVTVRRDGQVYEIAFEHGDKVSDLTVVGTCGRRNRGTSVHFWPDAKYFDSA 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F   RL+   ++KA L   ++  ++            +  ++++  GLK YL   ++ 
Sbjct: 178 N-FSVTRLVNNLRAKAVLCPGLEITFTDK-------VNNKDYKWFYEDGLKDYLAEGVKG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
            +++  E FTG+   +                     SY N I T +GGTH +GLR  L 
Sbjct: 230 YTVLPEEPFTGEFSAETEA-ANWAVIWQPEGGEMITESYVNLIPTAQGGTHVNGLRQGLL 288

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R + +  DD+      +LSV I++P+FAGQTK +L S      V  
Sbjct: 289 DAMREFCEFRNLLPRGVKLTGDDVFDRCSYVLSVKIQDPQFAGQTKERLSSRQTAAFVSG 348

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L + P  A +L E  I  +  R+R    ++V RK       LPGKL DCS 
Sbjct: 349 VVKDSFSLWLNEKPQLAEQLAEVCIANAHRRMR--ASKKVVRKKVASGPALPGKLTDCSV 406

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
              + TE+F VEGDSAGGSAKQAR+R  QAV+PLRGKILN     ++++  +Q++ D+  
Sbjct: 407 QDLNRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG    S    + LRY K+ I+ DAD DG HIA+LL   F +    L+E  H+++  PP
Sbjct: 467 ALGIDPDSDNL-DSLRYGKICILADADSDGLHIATLLCALFTRHFRALVEAGHIYVAMPP 525

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+RI  G +  YA D++ K  +LE   K  K KI + RFKGLGEM   QL+ET MD N R
Sbjct: 526 LYRIDCGKEVFYALDDDEKDGVLERLSKK-KAKINVQRFKGLGEMNPLQLRETTMDPNTR 584

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            L+++ I+        T + ++ L+G K AD+R  ++Q      +
Sbjct: 585 RLVQLTIDD----SAATMEMMDMLLGKKRADDRRSWLQSNGDMAE 625


>gi|310820411|ref|YP_003952769.1| type II DNA topoisomerase subunit B [Stigmatella aurantiaca
           DW4/3-1]
 gi|309393483|gb|ADO70942.1| Type II DNA topoisomerase, B subunit [Stigmatella aurantiaca
           DW4/3-1]
          Length = 642

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 263/652 (40%), Positives = 374/652 (57%), Gaps = 17/652 (2%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  + Y  + I++LEGLEPVR RP MYIGGTD    HHL  E++DN++DEVI G+A+ +E
Sbjct: 2   AKKETYTGADIQVLEGLEPVRKRPAMYIGGTDGTGYHHLLWEILDNSVDEVINGHASTVE 61

Query: 99  VSLDGNG-FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           V+L  +   +TVVDNGRGIPV+  PK   K  +E+ILTTLHAGGKF+   Y  SGGLHGV
Sbjct: 62  VTLHKDSRTITVVDNGRGIPVDIMPKL-KKPAVEVILTTLHAGGKFEQGNYIHSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNAL+ +L V + R+     Q ++RG   +PL+ +   R   GT ITF PDP+IFG
Sbjct: 121 GSSVVNALARKLLVEIKREGKRHVQHYARGKATTPLKVEGPARG-TGTSITFEPDPEIFG 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +K  FD   + +  ++K+YL   +   W       E         +   GG+  YL   +
Sbjct: 180 EKLKFDPELIRERLEAKSYLHKGMTVVWKD-----ETASPATSVTYKHDGGIAEYLNKVV 234

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRV 336
             R+                    +E A+ W E  +  I SY N I T +GGTHE+GLR 
Sbjct: 235 AERNKPVVPPGGAVFYHARDSEVRLEAALVWTEATDENIRSYVNGIPTPQGGTHEAGLRG 294

Query: 337 ALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           A+ + ++ Y E      + +++ ++D+      ILS ++ EP+F GQTK +L + +    
Sbjct: 295 AVVKAVRNYIETHNLSPKGVTLTAEDIREGITAILSCYVVEPQFQGQTKGRLNNPEVTAQ 354

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE--VNRKTAIRKLRLPGKL 453
           V+  LR   + +L  N       +  +I  +  R   R   +    +     +L LPGKL
Sbjct: 355 VDGVLRPALEKWLNDNKSIGEAAVARIILAARAREASRAASQAVSRKTAVSHRLNLPGKL 414

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS      +ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A ++K+  N+++
Sbjct: 415 ADCSSTEPSTSELFLVEGDSAGGSAKQGRDRRTQAILPLRGKVLNAEQASTDKVATNKEL 474

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            D+V ALGC   S +    LRY ++ ++ DAD DG HIA+LLLTFFY+ +  LIE   + 
Sbjct: 475 QDIVSALGCGIGSDFDLSKLRYGRIFLLMDADSDGHHIATLLLTFFYRHLRPLIESGAVH 534

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           +  PPL+++  G ++ +A DE  + +I+ E K  G  K  I RFKGLGEM A +LK T +
Sbjct: 535 IAQPPLYKVEIGKETYWALDEADRDRIVRE-KAKGNAKPNIMRFKGLGEMTADELKTTTL 593

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D +KR  L+V I+  L    +T   IN L+G     RFKFI ERA  + D+ 
Sbjct: 594 DPHKRMSLQVTIDNPL----ETDRVINDLLGKDVSARFKFIMERAGEVQDLD 641


>gi|88797038|ref|ZP_01112628.1| DNA topoisomerase IV, B subunit [Reinekea sp. MED297]
 gi|88779907|gb|EAR11092.1| DNA topoisomerase IV, B subunit [Reinekea sp. MED297]
          Length = 631

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 247/648 (38%), Positives = 363/648 (56%), Gaps = 26/648 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           + +NY A +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE + GYA+ ++V
Sbjct: 2   SQNNYSAEAIEVLSGLDPVRKRPGMY---TDTTRPNHLAQEVIDNSVDEALGGYADQVDV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +G L+V DNGRG+PV+ HP+      +E+ILT LH+GGKF    Y+ SGGLHGVG+
Sbjct: 59  ILYKDGSLSVTDNGRGMPVDIHPEH-GIPGVELILTRLHSGGKFSGKNYQFSGGLHGVGV 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGD 218
           SVVNALS+ L V+V R   I    F  G     +E   + +    GT + F PD   F  
Sbjct: 118 SVVNALSEVLEVSVKRDGKIHRMGFKGGEKAMDMEVVGECKKKDTGTTVRFMPDASYFDT 177

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F  +RL  + ++KA L   ++  +  +++        E + +++  GL+ YL +   
Sbjct: 178 G-KFLVSRLKHVLRAKAVLCPGLRINFINEEK-------DETDTWFYEDGLRDYLTSTTS 229

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336
               +  E FTG           V+WA+ W  E  E    SY N I T +GGTH +GLR 
Sbjct: 230 AYETLPEEPFTGSFSSD---EEAVDWAVQWLPEGGEGLFESYVNLIPTPQGGTHVNGLRQ 286

Query: 337 ALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            +   ++++ E      R + +  +D+      +LS  +++P+FAGQTK +L S  A   
Sbjct: 287 GMLEALREFCEYRNLLPRGVKLSPEDVWDKCSYVLSFKMQDPQFAGQTKERLSSRQASAF 346

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           +   ++D F  YL Q+   A  L E  I  +  R+R+ K  +V RK       LPGKLAD
Sbjct: 347 ISGVVKDAFALYLNQHTDIAELLAELAITNANARMRKAK--KVARKKVTTGPALPGKLAD 404

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS N A   ELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     S ++  + ++ +
Sbjct: 405 CSGNDAMRGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDSSELLASDEVHN 464

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  ALG    S+   E LRY KV I+ DAD DG HIA+LL   F +    L+E  H+++ 
Sbjct: 465 IAIALGVDPDSESV-EGLRYGKVCILADADSDGLHIATLLCALFVRHFRKLVEDGHVYVA 523

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFK-KHGKGKIEISRFKGLGEMLASQLKETAMD 634
            PPL+R+  G +  YA D++ ++ IL   K +  KGKI+I RFKGLGEM   QL+ET MD
Sbjct: 524 MPPLYRVDIGKEVFYALDDDEREGILNRLKAEKKKGKIQIQRFKGLGEMNPLQLRETTMD 583

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            N R L+++ I +   +++        L   ++ +R  +++ +    +
Sbjct: 584 PNTRRLVQLTIEEGDQTMEIMDML---LAKKRSGDRKIWLESKGDLAE 628


>gi|323491055|ref|ZP_08096247.1| DNA topoisomerase IV subunit B [Vibrio brasiliensis LMG 20546]
 gi|323314719|gb|EGA67791.1| DNA topoisomerase IV subunit B [Vibrio brasiliensis LMG 20546]
          Length = 626

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 247/645 (38%), Positives = 355/645 (55%), Gaps = 24/645 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A+ ++V 
Sbjct: 2   TEQYNAGAIEVLNGLEPVRRRPGMY---TDTARPNHLGQEVIDNSVDEALAGHASKVQVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+    S +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + VTV R   ++   F  G  +S L       R  +GT + F PD   F   
Sbjct: 118 VVNALSKRVEVTVRRDGQVYEIAFEHGDKVSDLTVTGTCGRRNKGTSVHFWPDASYFDSP 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F   RL+   ++KA L   ++  ++                + +  GLK YL   ++ 
Sbjct: 178 N-FSVTRLVNNLRAKAVLCPGLEITFTDK-------VNGNDYRWLYEDGLKDYLAEGVKG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
            +++  E FTG+   +                     SY N I T +GGTH +GLR  L 
Sbjct: 230 YAVLPEEPFTGEFSAETEA-ANWAVIWQPEGGEMITESYVNLIPTAQGGTHVNGLRQGLL 288

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R + +  DD+      +LSV +++P+FAGQTK +L S      V  
Sbjct: 289 DAMREFCEFRNLLPRGVKLTGDDVFDRCSYVLSVKMQDPQFAGQTKERLSSRQTAAFVSG 348

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L + P  A +L E  I  +  R+R    ++V RK       LPGKL DCS 
Sbjct: 349 VVKDSFSLWLNEKPQLAEQLAEVCIANAHRRMR--ASKKVVRKKVASGPALPGKLTDCSV 406

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
              + TE+F VEGDSAGGSAKQAR+R  QAV+PLRGKILN      +++  +Q++ D+  
Sbjct: 407 QDLNRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSPDQVLASQEVHDISV 466

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG    +    + LRY K+ I+ DAD DG HIA+LL   F +    L+E  H+++  PP
Sbjct: 467 ALGIDPDTDNL-DGLRYGKICILADADSDGLHIATLLCALFTRHFRALVEAGHIYVAMPP 525

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+RI  G +  YA D++ K+ ILE   K  K KI + RFKGLGEM   QL+ET MD N R
Sbjct: 526 LYRIDCGKEVFYALDDDEKEGILERLSKK-KAKINVQRFKGLGEMNPLQLRETTMDPNTR 584

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            L+++ I+        T + ++ L+G K AD+R  ++Q      +
Sbjct: 585 RLVQLTIDD----SDATMEMMDMLLGKKRADDRRTWLQSNGDMAE 625


>gi|256832653|ref|YP_003161380.1| DNA gyrase subunit B domain-containing protein [Jonesia
           denitrificans DSM 20603]
 gi|256686184|gb|ACV09077.1| DNA gyrase subunit B domain protein [Jonesia denitrificans DSM
           20603]
          Length = 723

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 239/717 (33%), Positives = 350/717 (48%), Gaps = 68/717 (9%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
           P  ++Q  + +Y A  + +LEGLE VR RPGMYIG TD + + H   E+IDN++DE + G
Sbjct: 12  PLVSSQIPTSDYTARHLSVLEGLEAVRKRPGMYIGSTDSRGIMHCLWEIIDNSVDEALGG 71

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           +   I V+L  +  +TV DNGRGIPV+  PK    S +E++ T LHAGGKF   +Y  SG
Sbjct: 72  HCTDITVTLHADTSVTVEDNGRGIPVDIEPK-TGLSGVEVVYTKLHAGGKFGGGSYTASG 130

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK----------------- 195
           GLHGVG SVVNALS  L V V R + +    F RG P    +                  
Sbjct: 131 GLHGVGASVVNALSARLDVEVTRASKVHVMTFRRGEPGIFHDTDVDRPSPESRFDAFVNR 190

Query: 196 ------KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
                 ++  R   GT++ +  D +IF   A F+   L+   +  ++L   +      ++
Sbjct: 191 SELRVARKAKRGLTGTKVRYWADRQIFPTSAVFNYDELVARARQTSFLVPGLTITIRDER 250

Query: 250 EIAEK--YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT--------------- 292
            +        P +E F   GG   +++    +  L  +  F G                 
Sbjct: 251 AVPGTPGEHGPYEESFVHDGGAVDFVEFLAPDVPLTGTWRFQGTGSFKETVPVLDNNGHL 310

Query: 293 -EKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
             ++      V+ A+ W         S+ N I T +GGTH  G    L + ++K  E   
Sbjct: 311 VSQEVERDCVVDIALRWGNGYDTTVRSFVNIIATPKGGTHLVGFEQGLVKYLRKAVETNA 370

Query: 351 NKRAISIISDDLM-------ISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RTVENA 399
            K  +S   +               +L+V + EP+F GQTK  L +   +    + VE+ 
Sbjct: 371 RKLKVSTKDNQERIDKEDILAGLTAVLTVRLAEPQFEGQTKEVLGTAPVRAIVSKVVEDN 430

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK-TAIRKLRLPGKLADCSQ 458
           L+  F      +    + LLE ++     R+  RKQ+E++R+  A+    LP KLADC  
Sbjct: 431 LKALFTSTKRDDKAHTSLLLEKIVAEMRARVSARKQKEISRRKNALESSTLPAKLADCRT 490

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
           +    +ELFIVEGDSA G+AK AR+   QA+LP+RGKILNV  A    +  N +   ++Q
Sbjct: 491 HDVTRSELFIVEGDSALGTAKLARSSEFQALLPIRGKILNVQKASISDMLRNAECASIIQ 550

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
            +G  +   +  E  RY KVI+MTDADVDGAHI +LLLT F++ M  LI +  +F   PP
Sbjct: 551 VIGAGSGRSFDLEAARYGKVILMTDADVDGAHIRTLLLTLFFRYMRPLIAEGRVFAAVPP 610

Query: 579 LFRI------TQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKET 631
           L RI       +    +Y + E      L + +K G+  K +I R+KGLGEM A QL ET
Sbjct: 611 LHRIEVVGSGRRKNSYIYTYSEAELTATLAKLRKQGRAFKEDIQRYKGLGEMDADQLAET 670

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVGT 686
            MD   RTL RV ++         +++   LMG     R +FI + AS +D   +  
Sbjct: 671 TMDPAHRTLRRVTVDH----AHAAEEAFELLMGQHVAPRKEFIIQGASQLDRAQIDA 723


>gi|254291773|ref|ZP_04962558.1| topoisomerase IV, subunit B [Vibrio cholerae AM-19226]
 gi|150422285|gb|EDN14247.1| topoisomerase IV, subunit B [Vibrio cholerae AM-19226]
          Length = 626

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 248/645 (38%), Positives = 360/645 (55%), Gaps = 24/645 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AGYA+ I+V 
Sbjct: 2   TEQYNAGAIEVLNGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGYASKIQVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+    S +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R   ++   F  G  ++ L       R   GT + F PD K F   
Sbjct: 118 VVNALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSP 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL+   ++KA L   ++  ++      E         + +  GLK YL   ++ 
Sbjct: 178 N-FSVSRLINNLRAKAVLCPGLEIIFTDKVNNNE-------HRWLYEDGLKDYLAEGVKG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
             L+  E FTG+   +     T               SY N I T +GGTH +GLR  L 
Sbjct: 230 YILLPEEPFTGEFTAQTEA-ATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLL 288

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R + +  +D+      +LS+ +++P+FAGQTK +L S  +   V  
Sbjct: 289 DAMREFCEFRNLLPRGVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSG 348

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L + P  A +L E  I  +  R+R    ++V RK       LPGKL DC+ 
Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEVCIANAHSRMR--ASKKVVRKKIASGPALPGKLTDCTV 406

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
              + TELF+VEGDSAGGSAKQAR+R  QAV+PLRGKILN     ++++  +Q++ D+  
Sbjct: 407 QDLNRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG    S   E  LRY KV I+ DAD DG HIA+LL   F +    L++  H+++  PP
Sbjct: 467 ALGIDPDSDNLEA-LRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPP 525

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+RI  G +  YA D++ K+ +LE   +  K K+ + RFKGLGEM   QL+ET MD N R
Sbjct: 526 LYRIDCGKEVFYALDDQEKEGVLERLSQK-KAKVNVQRFKGLGEMNPLQLRETTMDPNTR 584

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            L+++ I+      + T + ++ L+G K AD+R  ++Q      +
Sbjct: 585 RLVQLTIDD----AEATDEMMDMLLGKKRADDRRAWLQRNGDMAE 625


>gi|322831363|ref|YP_004211390.1| DNA topoisomerase IV, B subunit [Rahnella sp. Y9602]
 gi|321166564|gb|ADW72263.1| DNA topoisomerase IV, B subunit [Rahnella sp. Y9602]
          Length = 631

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 247/651 (37%), Positives = 360/651 (55%), Gaps = 27/651 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           +   Y+A SI +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  IEV
Sbjct: 2   SQSTYNADSIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRIEV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +  L V+D+GRG+PV+ H +      +E+I   LHAGGKF N  Y+ SGGLHGVGI
Sbjct: 59  ILHEDQSLEVIDDGRGMPVDIHAE-EGVPAVELIFCRLHAGGKFSNKNYQFSGGLHGVGI 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS  + V V R   ++   F  G  +  L       +   GT + F PD   F  
Sbjct: 118 SVVNALSKRVEVAVKRGGEVYEMAFENGDKVQDLHVTGTCGKRNTGTSVHFWPDGSFFDS 177

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F  +RL  + ++KA L   V+  +       E       + + +  GL  YL   + 
Sbjct: 178 PR-FSVSRLSHLLKAKAVLCPGVEILFKDKVNNTE-------QRWCYDDGLTDYLMEAVN 229

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336
               +  + F G           V+WA+ W  E  E    SY N I T +GGTH +GLR 
Sbjct: 230 GLITLPEKAFVGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 286

Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      
Sbjct: 287 GLLDAMREFCEYRNILPRGVKLSAEDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 346

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           V   ++D F  +L QN   A +L E  I  ++ RLR    ++V RK       LPGKLAD
Sbjct: 347 VSGVVKDAFSLWLNQNVQAAEQLAELCISSAQRRLR--AAKKVVRKKLTSGPALPGKLAD 404

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C+    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D
Sbjct: 405 CTSQDLNMTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 464

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  A+G    S+     LRY K+ I+ DAD DG HIA+LL   F +    L+   H+++ 
Sbjct: 465 ISVAIGIDPDSEDL-TQLRYGKICILADADSDGLHIATLLCALFVRHFRSLVRGGHVYVA 523

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+RI  G +  YA DE+ K+ +LE+ K+  KGK  + RFKGLGEM   QL+ET +D 
Sbjct: 524 MPPLYRIDLGKEVFYALDEQEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPLQLRETTLDP 582

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDVG 685
           N R L+++ I++D   +  T   ++ L+  K +++R  ++QE+    + + 
Sbjct: 583 NTRRLVQLTIDED--DIDQTLRMMDMLLAKKRSEDRRNWLQEKGDTAE-LD 630


>gi|283787161|ref|YP_003367026.1| topoisomerase IV subunit B [Citrobacter rodentium ICC168]
 gi|282950615|emb|CBG90287.1| topoisomerase IV subunit B [Citrobacter rodentium ICC168]
          Length = 630

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 248/647 (38%), Positives = 364/647 (56%), Gaps = 26/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQSYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R   +++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ESFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL  + ++KA L   V+  +      +E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDLVNNSE-------QRWCYQDGLNDYLGEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G  E        V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LPTLPEKPFIGNFEGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A  L E  I  ++ RLR    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFTLWLNQNVQSAEMLAEMAIASAQRRLR--AAKKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S+     LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 465 SVAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKHGHVYVAL 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA  EE K  +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 524 PPLYRIDLGKEVYYALTEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ I+      + T   ++ L+  K +++R  ++QE+    D
Sbjct: 583 TRRLVQLTISD--EDDQRTNAVMDMLLAKKRSEDRRNWLQEKGDLAD 627


>gi|168238136|ref|ZP_02663194.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194737821|ref|YP_002116136.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|194713323|gb|ACF92544.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197289017|gb|EDY28388.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 630

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 248/650 (38%), Positives = 366/650 (56%), Gaps = 27/650 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + VTV R   +++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVTVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ESFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL+ + ++KA L   V+  +  +   +E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLMHVLKAKAVLCPGVEITFKDEVNNSE-------QRWCYQDGLNDYLGEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G    +      V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LPTLPEKPFIGNFNGETE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A +L E  I  ++ RLR    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFSLWLNQNVQAAEQLAEMAIASAQRRLR--AAKKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++   Q++ D+
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLAPQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVKNGHVYVAL 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA  EE K  +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 524 PPLYRIDLGKEVYYALTEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDVG 685
            R L+++ I+      + T   ++ L+  K +++R  ++QE+    D + 
Sbjct: 583 TRRLVQLTISD--EDDQRTNAMMDMLLAKKRSEDRRNWLQEKGDLAD-LD 629


>gi|149916750|ref|ZP_01905252.1| type II DNA topoisomerase, B subunit [Plesiocystis pacifica SIR-1]
 gi|149822467|gb|EDM81856.1| type II DNA topoisomerase, B subunit [Plesiocystis pacifica SIR-1]
          Length = 644

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 252/659 (38%), Positives = 381/659 (57%), Gaps = 22/659 (3%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +   +  +   +Y A SI++L+ ++ VR RPGMYIGG +++ LHH+  E++DN++DEVI 
Sbjct: 2   AKKKSTTAKGKSYGAESIQLLQNIDHVRARPGMYIGGVNKEGLHHIVWEILDNSVDEVIN 61

Query: 92  GYANLIEVSLDGNGF-LTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           G+A+ I+V+L+ +   +T+ D+GRGIPV+ HP+      +  + T L AGGKFD  +Y+ 
Sbjct: 62  GHASQIKVTLEADRRGITISDDGRGIPVDKHPEL-KVPAVVAVFTQLGAGGKFDGESYKH 120

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG +V NAL++ L V V R   +    F+RG+    + ++ KVR   GT +  R
Sbjct: 121 SGGLHGVGAAVANALAERLEVRVKRDGKLHEVIFNRGVQEGRMSRRGKVRG-TGTEVFLR 179

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PDP++FG KA  D   L    ++K+YL   +K  ++ +          + E F+   G+ 
Sbjct: 180 PDPEMFGQKATLDPDVLRGRIEAKSYLHKGLKITFTDE-------STGKSEVFHHADGIA 232

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330
            YL   +  R   +        E+    +  V  A     E   + SY N + T +GGTH
Sbjct: 233 EYLDKLIAVRGKAAVHKGRFYLERSEEPKLEVALAWTEATE-SLVASYVNGVPTPDGGTH 291

Query: 331 ESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           E GLR AL + I+ Y +  +   + +SI  +D+    + +LS ++ EP+F  QTK +L +
Sbjct: 292 EKGLRNALGKAIRAYIDAHKLAPKGVSIALEDIREGLIALLSTYVLEPQFQSQTKNRLNN 351

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE---VNRKTAIRK 446
            +    VE A+    + +L +N      ++  ++  +  R   R             + K
Sbjct: 352 PEVATQVEGAIAPVLEQWLHENRSIGDAIVARIVLAARARAASRAAANSVSRKNAGQVSK 411

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
           + LPGKLADC+ N     ELFIVEGDSAGGSAK  RNR+ QA+LPLRGK+LN A A   +
Sbjct: 412 IGLPGKLADCANNNPAKCELFIVEGDSAGGSAKMGRNRNTQAILPLRGKVLNAAQASVAR 471

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           +  N+++ ++V+ALGC     +  E LRY +VI++ DAD DG HIA+LLLTFFY+ M +L
Sbjct: 472 VMKNEELGNIVKALGCGIGKDFNIEGLRYHRVILLMDADSDGHHIATLLLTFFYKYMPEL 531

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           I + H++L  PPLFR+  G ++ +A D+ H Q+IL   K   +GK EI RFKGLGEM+  
Sbjct: 532 IRKGHVYLAQPPLFRVDVGKETHWAADDAHLQRILAGIK---RGKPEIQRFKGLGEMMPK 588

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            L++T +D  KR L+RV I  +L     T   I+ LMG  A  R++FI ERA+  D++ 
Sbjct: 589 TLRDTTLDPKKRQLIRVGIEDEL----ATDRVIHDLMGKDASMRYQFIMERAADADELD 643


>gi|225570591|ref|ZP_03779616.1| hypothetical protein CLOHYLEM_06693 [Clostridium hylemonae DSM
           15053]
 gi|225160604|gb|EEG73223.1| hypothetical protein CLOHYLEM_06693 [Clostridium hylemonae DSM
           15053]
          Length = 650

 Score =  552 bits (1421), Expect = e-155,   Method: Composition-based stats.
 Identities = 248/659 (37%), Positives = 351/659 (53%), Gaps = 33/659 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  + YDA SI ILEGLE VR RPGMYIG    K L+HL  E++DNA+DE +AG  + I 
Sbjct: 12  AKKNTYDADSISILEGLEAVRKRPGMYIGSVSTKGLNHLIYEIVDNAVDEHLAGCCDEIR 71

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+L+ +G  TV DNGRG+PV  H K    S   I+ TTLHAGGKFD+S+Y+ SGGLHGVG
Sbjct: 72  VTLEKDGSATVSDNGRGVPVGLHAK--GVSAERIVYTTLHAGGKFDDSSYKTSGGLHGVG 129

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK----KEKVRNKRGTRITFRPDPK 214
            SVVNALS  + V V+R+  I   ++ RG P+  LE     K     K GT+I F PD  
Sbjct: 130 SSVVNALSAYMDVQVSREGYIHHDRYERGKPVIELEDGLLPKTGKTKKTGTKINFLPDDT 189

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     F A  +       AYL+  +   +   +        PE+  ++ P G+  +++
Sbjct: 190 IFEK-TRFRADEVKSRMHETAYLNPTLTIIFEDLR-----GETPERIVYHEPDGILGFIK 243

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESG 333
              +    +       K   +G     VE A  +  E +  +  +CN I   EGGTH +G
Sbjct: 244 ELNQKNEAVHEP-VYFKGVAEGI---EVEAAFQYVNEFHENVLGFCNNIYNAEGGTHLTG 299

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            +   T  + +YA       ++  +    D+      I+S+   +P F GQTKTKL + D
Sbjct: 300 FKTTFTTVMNQYARELGILKEKDANFTGADIRNGMTAIVSIKHPDPRFEGQTKTKLDNPD 359

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           A + V     D    Y  +N     K++    + ++ R    K +              G
Sbjct: 360 AAKAVSKVTNDEITRYFDRNLDNLKKVIACAEKAAKIRKTEEKAKTNLLTKQKYSFDSNG 419

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLA+C    A   E+FIVEGDSAGGSAK AR+R  QA+LP+RGKILNV  A  +KI  N 
Sbjct: 420 KLANCESRDASRCEIFIVEGDSAGGSAKTARDRMFQAILPIRGKILNVEKASIDKILANA 479

Query: 512 QIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
           +I  ++ A GC       + +    LRY+K+IIM DADVDGAHI++LLLT FY+ M +LI
Sbjct: 480 EIKTMINAFGCGFSEGYGNDFDISGLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELI 539

Query: 568 EQKHLFLISPPLFR-ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            + H+++  PPL++ I +  +  Y +D+    K LE +++   G   + R+KGLGEM A 
Sbjct: 540 YEGHVYVAMPPLYKAIPKKGEEEYLYDD----KALERYRRKHDGPFTLQRYKGLGEMDAQ 595

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           QL ET ++   R L R+EI     +   T+     LMGT+   R  FI E A+  + + 
Sbjct: 596 QLWETTLNPETRLLKRIEIEDARMASGVTE----MLMGTEVPPRRTFIYENATEAE-LD 649


>gi|37527805|ref|NP_931150.1| DNA topoisomerase IV subunit B [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787241|emb|CAE16322.1| topoisomerase IV subunit B [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 631

 Score =  552 bits (1421), Expect = e-155,   Method: Composition-based stats.
 Identities = 250/646 (38%), Positives = 369/646 (57%), Gaps = 26/646 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  IEV L
Sbjct: 4   SSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHAKHIEVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V+D+GRG+PV+ HP+    S +E+IL+ LHAGGKF N  Y+ SGGLHGVGISV
Sbjct: 61  HSDQSLEVIDDGRGMPVDIHPE-EGVSAVELILSRLHAGGKFSNKNYQFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + VTV R + I+   F  G  +  L       +   GT + F PD + F D  
Sbjct: 120 VNALSKRIEVTVRRDSQIYQIAFENGDKVQELTVIGSCGKRNTGTGVHFWPD-ESFFDSP 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L   V+  +       E       +++ +  GL  YL   +   
Sbjct: 179 RFSVSRLTHLLKAKAVLCPGVEIVFKDKINGTE-------QKWCYADGLTDYLMAAVNGL 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
           + + +  F G           V+WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 TTLPAAPFVGTFSG---ATEAVDWALLWLPEGGELLAESYVNLIPTMQGGTHVNGLRQGL 288

Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E      R + + +DD+      +LSV +++P+FAGQTK +L S  +   V 
Sbjct: 289 LDAMREFCEFRNILPRGVKLAADDIWDRCTYVLSVKMQDPQFAGQTKERLSSRQSAAFVS 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             ++D F  +L QN  EA +L E  I  ++ R+R    ++V RK       LPGKLADC+
Sbjct: 349 GVVKDAFSLWLNQNVQEAEQLAELAIASAQRRMR--AAKKVVRKKLTSGPALPGKLADCT 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
               + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+ 
Sbjct: 407 SQDLNFTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G      +    LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  P
Sbjct: 467 VAIGIDPD-SHDLSQLRYGKICILADADSDGLHIATLLCALFVRHFPTLVKNGHVYMAMP 525

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G +  YA DEE K  +L+   +  +GK  + RFKGLGEM   QL+ET +D N 
Sbjct: 526 PLYRIDLGKEVYYALDEEEKSAVLDRLSRK-RGKPNVQRFKGLGEMNPMQLRETTLDPNT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++ I+    + ++T   ++ L+  K +++R  ++QE+   +D
Sbjct: 585 RRLVQLTIDD--ENYQETFSMMDMLLAKKRSEDRRNWLQEKGDTVD 628


>gi|329298650|ref|ZP_08255986.1| DNA topoisomerase IV subunit B [Plautia stali symbiont]
          Length = 631

 Score =  552 bits (1421), Expect = e-155,   Method: Composition-based stats.
 Identities = 249/648 (38%), Positives = 366/648 (56%), Gaps = 26/648 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           +  +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  +EV
Sbjct: 2   SQSSYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVEV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGI
Sbjct: 59  ILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS  + VTV R   I+   F  G  +  +     V +   GT + F PD + F D
Sbjct: 118 SVVNALSKRVEVTVRRNGEIYQIAFENGDKVQDMAVIGTVGKRNTGTSVHFWPD-ESFFD 176

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F  +RL  + ++KA L   V+  +       E       + + +  GL  YL   + 
Sbjct: 177 SPRFSVSRLKHLLKAKAVLCPGVEIVFKDKVNDTE-------QTWLYQDGLTDYLNEAVN 229

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336
               +  + F G           V+WA+ W  E  E    SY N I T +GGTH +GLR 
Sbjct: 230 GLPTLPEKPFVGSFAGDVE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 286

Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      
Sbjct: 287 GLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 346

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           V   ++D F  +L QN   A  L E  I  ++ R+R    ++V RK       LPGKLAD
Sbjct: 347 VSAVVKDAFSLWLNQNVQAAEMLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C+    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D
Sbjct: 405 CTAQDLNKTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 464

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  A+G    S+     LRY K+ I+ DAD DG HIA+LL   F +    L+ Q H+++ 
Sbjct: 465 ISVAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRSLVRQGHVYVA 523

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+RI  G +  YA DE+ K+ +LE+ K+  KGK  + RFKGLGEM   QL+ET +D 
Sbjct: 524 MPPLYRIDLGKEVYYALDEDEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPLQLRETTLDP 582

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           N R L+++ +++    ++ T   ++ L+  K +++R  ++QE+    D
Sbjct: 583 NTRRLVQLTVDE--EDVEQTLRMMDMLLAKKRSEDRRNWLQEKGDLAD 628


>gi|300718429|ref|YP_003743232.1| DNA topoisomerase IV subunit B [Erwinia billingiae Eb661]
 gi|299064265|emb|CAX61385.1| DNA topoisomerase IV subunit B [Erwinia billingiae Eb661]
          Length = 629

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 250/646 (38%), Positives = 360/646 (55%), Gaps = 26/646 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y+A SI +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  +EV L
Sbjct: 4   SSYNADSIEVLSGLEPVRRRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHAKRVEVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V+D+GRG+PV+ HP+      +E+I   LHAGGKF N  Y+ SGGLHGVGISV
Sbjct: 61  HADQSLEVIDDGRGMPVDIHPE-EGVPAVELIFCRLHAGGKFSNKNYQFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + VTV R   ++   F  G  +  L     V +   GTR+ F PD   F    
Sbjct: 120 VNALSTRVEVTVRRNAEVYEMAFENGDKVEDLHVTGTVGKRNTGTRVRFWPDVNFFDSPR 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L   V+  +  +    E       + + +  GL  YL   +   
Sbjct: 180 -FSVSRLSHLLKAKAVLCPGVEIVFKDNVNNTE-------QTWCYADGLTDYLCEAVNGL 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +    F G           V+WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 PTLPERPFVGAFAGDVE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGL 288

Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V 
Sbjct: 289 LDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             ++D F  +L QN   A  L E  +  ++ R+R    ++V RK       LPGKLADCS
Sbjct: 349 GVVKDAFSLWLNQNIQTAEILAEMAVSSAQRRMR--AAKKVVRKKLTSGPALPGKLADCS 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
               + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+ 
Sbjct: 407 AQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S+     LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  P
Sbjct: 467 VAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRTLVKNGHVYVAMP 525

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G +  YA DEE K  IL++ K+  KGK  + RFKGLGEM   QL+ET +D N 
Sbjct: 526 PLYRIDLGKEVYYALDEEEKAGILDQLKRK-KGKPGVQRFKGLGEMNPLQLRETTLDPNT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++ +  D   ++ T   ++ L+  K +++R  ++QE     D
Sbjct: 585 RRLVQLTVEDDE--VEKTMAVMDMLLAKKRSEDRRNWLQENGHTAD 628


>gi|269956776|ref|YP_003326565.1| DNA topoisomerase [Xylanimonas cellulosilytica DSM 15894]
 gi|269305457|gb|ACZ31007.1| DNA topoisomerase (ATP-hydrolyzing) [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 715

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 242/713 (33%), Positives = 344/713 (48%), Gaps = 65/713 (9%)

Query: 30  PDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEV 89
             + +  + SA  NY A  + +LEGLE VR RPGMYIG TD + L H   E+IDN++DE 
Sbjct: 2   TTTASPESSSAEKNYTARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEA 61

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
           + G+A  I V L  +  +TV D+GRGIPV+  PK    S +E++ T LHAGGKF   +Y 
Sbjct: 62  LGGFATKIAVVLHADSSVTVTDDGRGIPVDVEPK-TGLSGVEVVFTKLHAGGKFGGGSYT 120

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE--------------- 194
            SGGLHGVG SVVNALS  L V V R    +   F RG P +  +               
Sbjct: 121 ASGGLHGVGASVVNALSARLDVEVDRGGKTYRMTFHRGEPGTFADGPAGASPESAFSPFI 180

Query: 195 -------KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247
                       R   GTR+ +  D +IF   A F    L+   +   +L   ++     
Sbjct: 181 ERSELAVVGRAKRGVTGTRVRYWADRQIFPKSAVFSYDELVTRVRQTTFLVPGLEITVRD 240

Query: 248 DKE--IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE------------ 293
           ++          P +E F   GG   ++     +  + ++    G               
Sbjct: 241 ERGLPGTPGADGPHEEMFVHHGGAVDFVDFLAPDAPVTATWTLRGSETFTETVPVLDERG 300

Query: 294 ----KKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
               ++      V+ A+ W         ++ N I T +GG+H +G    L + ++K  E 
Sbjct: 301 HMSPREVQRDCEVDIALRWGTGYDTELRTFVNIIATPKGGSHLTGFEQGLVKVVRKQVEA 360

Query: 349 TQNKRAISII-------SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RTVE 397
              +  IS          DD+      +++V + EP+F GQTK  L +   +    RTVE
Sbjct: 361 NARRLKISAKDGGERLEKDDITAGLTAVVTVRLAEPQFEGQTKEVLGTAPVRAIVARTVE 420

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK-TAIRKLRLPGKLADC 456
             L          +  +A+ LL+ V+     R+  RKQ+E++R+  A+    LP KLADC
Sbjct: 421 KQLGAILTSTKRDDKAQASLLLDKVVAEMRARVSARKQKEISRRKNALETSSLPAKLADC 480

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
             +    +ELFIVEGDSA G+AK AR+   QA+LP+RGKILNV  A    +  N +   +
Sbjct: 481 RSDDVERSELFIVEGDSALGTAKLARSSDFQALLPIRGKILNVQKASISDMLRNAECAAI 540

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           +Q LG  +   +  +  RY KV++MTDADVDGAHI +LLLT FY+ M  L+E   +F   
Sbjct: 541 IQVLGAGSGRSFDLDAARYGKVVLMTDADVDGAHIRTLLLTLFYRYMRPLVEAGRVFAAV 600

Query: 577 PPLFRIT------QGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLK 629
           PPL RI       +G + +Y + E   Q  L+   + GK  K +I R+KGLGEM A QL 
Sbjct: 601 PPLHRIEVYGARGKGNEYIYTYSEAELQATLKRLDRAGKRYKDDIQRYKGLGEMDADQLA 660

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           ET MD   RTL RV         +  +     LMG+    R  FI   A  +D
Sbjct: 661 ETTMDPRHRTLRRVT----AQHAEAAERVFELLMGSDVAPRKDFIISGAESLD 709


>gi|83648377|ref|YP_436812.1| DNA topoisomerase IV subunit B [Hahella chejuensis KCTC 2396]
 gi|83636420|gb|ABC32387.1| DNA topoisomerase IV, B subunit [Hahella chejuensis KCTC 2396]
          Length = 687

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 259/674 (38%), Positives = 370/674 (54%), Gaps = 26/674 (3%)

Query: 14  PQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKA 73
           P    +  + +       +     +  S+NY+A SI +L GL+PVR RPGMY   TD   
Sbjct: 32  PIQSIAGRERRPKARRQVTSCIQEKLLSNNYNADSIEVLNGLDPVRRRPGMY---TDTSR 88

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133
            +HL  EVIDN++DE +AG+A  ++V L  +G L+V D+GRG+PV+ H K      +E+I
Sbjct: 89  PNHLAQEVIDNSVDEALAGHARQVDVVLYKDGSLSVTDDGRGMPVDIH-KEEGMPGVELI 147

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           LT LHAGGKF +  Y+ SGGLHGVG+SVVNALS  L V + R   +    F+ G   S L
Sbjct: 148 LTKLHAGGKFSHKNYQFSGGLHGVGVSVVNALSLNLEVLIRRDGKVHRITFANGDKASDL 207

Query: 194 EKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
           E  +   +   GT +TF PDPK F     F   RL  + ++KA L   +K  +  +    
Sbjct: 208 EVIDTCGKRNTGTTVTFLPDPKYFDSP-KFSVLRLRHVLRAKAVLCSGLKVTFKDE---- 262

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
                 EK+E+Y+  GLK YL         +  E F G+          V+WA+ W  E 
Sbjct: 263 ---NTGEKDEWYYEDGLKDYLSGATNEFVTLPQEPFIGQMAGNTE---AVDWAVQWLPEG 316

Query: 313 PE--ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGI 369
            E    SY N I T +GGTH +GLR  L   ++++ E      R + +  +D+      +
Sbjct: 317 GELVAESYVNLIPTAQGGTHVNGLRTGLLEALREFCEFRNLLPRGVKLSPEDVWDRCAYV 376

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           LSV I+EP+F+GQTK +L S +    V   ++D F  +L ++  EA +L E  I  ++ R
Sbjct: 377 LSVKIQEPQFSGQTKERLSSRECATFVSGVVKDSFSLWLNKHTAEAEQLAELAINNAQSR 436

Query: 430 LRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
           LR    ++V RK       LPGKLADCS + A   ELF+VEGDSAGGSAKQAR+R  QAV
Sbjct: 437 LR--AAKKVARKKITSGPALPGKLADCSGSDAMRGELFLVEGDSAGGSAKQARDREFQAV 494

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549
           +PLRGKILN     SE+I  +Q++ D+  A+G    S    E LRY K+ I+ DAD DG 
Sbjct: 495 MPLRGKILNTWEVDSEQILASQEVHDIAVAIGVDPGSSNL-EGLRYGKICILADADSDGL 553

Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHG 608
           HIA+LL   F +    L+E  H+F+  PPL+RI       YA D+  KQ IL+    +  
Sbjct: 554 HIATLLCALFVKHFRPLVEAGHVFVAMPPLYRIDVAKDVYYALDDYEKQGILDRIVAEKK 613

Query: 609 KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKAD 668
           KGK  + RFKGLGEM   QL+ET M  + R L+++ +    ++ +        L   +A 
Sbjct: 614 KGKPNVQRFKGLGEMNPLQLRETTMAPDTRRLVQLTVEIADDTEEKMDML---LAKKRAS 670

Query: 669 ERFKFIQERASFID 682
           +R ++++ + +  +
Sbjct: 671 DRREWLESKGNLAE 684


>gi|125569849|gb|EAZ11364.1| hypothetical protein OsJ_01229 [Oryza sativa Japonica Group]
          Length = 753

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 236/694 (34%), Positives = 373/694 (53%), Gaps = 48/694 (6%)

Query: 27  GEIPDSPAFANQSASDNYDASSIR------------------------ILEGLEPVRMRP 62
                S A   +  +  Y A++++                        +LE L+ VR RP
Sbjct: 72  ASTAASEAMQEKRVAGEYTAANVQHILWIPYFHGHILWIPYFDGGSWSVLEALDGVRTRP 131

Query: 63  GMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122
           GMYIG T  + LHHL  E++DNA+DE  AGYA  ++V L G+  ++V DNGRGIP + HP
Sbjct: 132 GMYIGSTGSRGLHHLVYEILDNAVDEAQAGYATKVDVILHGDNSVSVTDNGRGIPTDIHP 191

Query: 123 KFPNKSTLEIILTTLHA--GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
           +   KS +E +LT +HA        S Y +SGGLHGVG+SVVNALS+ L VTV R    +
Sbjct: 192 Q-TKKSCVETVLTLMHAGGKFGGSKSGYTVSGGLHGVGLSVVNALSEALEVTVWRDGKEY 250

Query: 181 SQKFSRGIPLSPLEKKE---KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            Q +SRG  ++ L  +    +  +++GTRI F PD  IF     FD   +    +  A+L
Sbjct: 251 RQNYSRGKAITMLTSRTLSDESSSRQGTRIRFWPDKHIFTTTMDFDFNTIAGRIRELAFL 310

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +    + +    E     +  E+ + GGL  Y++    ++  +       + E  G 
Sbjct: 311 NPELTIALTKE----EDDLQVQHNEYCYAGGLVEYVKWLNTDKKSLHDP-IAFRKEMDGI 365

Query: 298 HRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAI 355
               V         +  +  Y N+I T +GGTH  GL+ +LTR I  +A+ ++    + I
Sbjct: 366 T-VDVSLQWCSDSYSDTVLGYANSIRTIDGGTHIDGLKTSLTRTINNFAKKSKTLKDKDI 424

Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415
           S+  + +      I++V +  PEF GQTKT+L + + +R VE ++++    YL  +P   
Sbjct: 425 SLSGEHVREGMTCIIAVKVPNPEFEGQTKTRLGNPEVRRIVEQSVQENLTEYLELHPDVL 484

Query: 416 TKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSA 474
             +L   +         +R +  V  K+ ++   LPGKLADC+ +    +E+FIVEGDSA
Sbjct: 485 DSILSKSLNALKAALAAKRARELVRTKSVLKSSSLPGKLADCASSDPEESEIFIVEGDSA 544

Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-L 533
           GGSAKQ R+R  QA+LPLRGKILN+       +  N++I +L+ ALG   + +   ++ L
Sbjct: 545 GGSAKQGRDRKFQAILPLRGKILNIERRDEAALYKNEEIQNLIVALGLGVKGEDFNKEAL 604

Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHD 593
           RY K++I+TDADVDGAHI +LLLTFF++    L ++  +++  PPL+++ +G ++ Y +D
Sbjct: 605 RYHKIVILTDADVDGAHIRTLLLTFFFRYQKALFDEGCIYVGVPPLYKVERGKQAHYCYD 664

Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
           +   ++++  F  +      I RFKGLGEM+ +QL ET MD  +R L ++++        
Sbjct: 665 DADLKELVNTFPTN--ASYHIQRFKGLGEMMPAQLWETTMDPERRMLKQLKVED----AA 718

Query: 654 DTQDSINKLMGTKADERFKFIQERASFI--DDVG 685
           +     + LMGT+ D R + IQ  AS +  + + 
Sbjct: 719 EANVVFSSLMGTRVDVRKQLIQNAASMVNLEHLD 752


>gi|320334068|ref|YP_004170779.1| DNA topoisomerase [Deinococcus maricopensis DSM 21211]
 gi|319755357|gb|ADV67114.1| DNA topoisomerase (ATP-hydrolyzing) [Deinococcus maricopensis DSM
           21211]
          Length = 653

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 253/654 (38%), Positives = 358/654 (54%), Gaps = 22/654 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYI-GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            Y A  I IL+GLE VR RPGMY+ GGT     H L +E+IDN +DE +AG+A+ I+V +
Sbjct: 5   EYTADQISILKGLEAVRKRPGMYVQGGTGIDGYHQLLTEIIDNGIDEGLAGFADTIQVIM 64

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G  TV+DNGRGIPV+   K   +  +E+I   LHAGGKF    Y++SGGLHGVG SV
Sbjct: 65  HADGSATVIDNGRGIPVDIM-KSEGRPAIEVIFMELHAGGKFGQGAYKVSGGLHGVGSSV 123

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK--RGTRITFRPDPKIFGDK 219
           VNALS  L VTV +   + + +F RG   +PL             T+++F PDP +F + 
Sbjct: 124 VNALSSYLDVTVNKHGKLHNVRFERGELTTPLRVVGPTPADVDWSTKVSFHPDPAVFSEF 183

Query: 220 -AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              FD  R+ +  +  AYL+G  K     ++       +  +E F+  GG+  + +  + 
Sbjct: 184 ENKFDYDRIRRRLRELAYLTGL-KIVLRDERTDLHAGQV-REEIFHEKGGIANFARALVT 241

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
           + + +                  V +  A       I +Y N I T +GGT  +G + A 
Sbjct: 242 DDTKLLYAEPIVMRGTHSDVEVEVAFIHANTYSADNILTYANMIRTRDGGTPLTGFKTAY 301

Query: 339 TRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR + KYA+     ++ +     +DL+     ++SV + EP+F  Q K KL++ +AQ  V
Sbjct: 302 TRILNKYAKEKNLVKSGNPVPSGEDLLEGIYCVVSVKLGEPQFESQAKVKLLNSEAQTAV 361

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLAD 455
              + + F  +L +NP     ++E   E +  R   RK    V R   +    LPGKLAD
Sbjct: 362 NAIVGEKFAEFLEENPKIGKIIVEKAAEAARAREAARKARDIVRRSNPLENDDLPGKLAD 421

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS      +ELFIVEG+SAGGSAK  R R  QA+LPLRGKILNV  A   KI  N +I  
Sbjct: 422 CSSQDPSESELFIVEGNSAGGSAKSGRERRFQAILPLRGKILNVEKAELNKILKNAEIRA 481

Query: 516 LVQALG-----CRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           L+ A+G           +   +LRY KVIIMTDAD+DG HIA+LLLTFF++ M  ++EQ 
Sbjct: 482 LIGAIGAGVEGTGDNMHFDLSNLRYHKVIIMTDADMDGGHIATLLLTFFFRYMRPVVEQG 541

Query: 571 HLFLISPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           +L++  PPL+R+T G   K  Y ++E+  + + ++  + GK K EI RFKGLGEM A QL
Sbjct: 542 YLYIAQPPLYRLTVGREKKGTYLYNEDDLRVLTKQATRDGK-KFEIQRFKGLGEMNADQL 600

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            +T M+   RTL RV I      L    ++   LMG++   R  FIQE A F +
Sbjct: 601 WDTTMNPETRTLKRVSIED----LISANETFEALMGSEVAPRKLFIQENARFAE 650


>gi|309812868|ref|ZP_07706600.1| DNA gyrase, B subunit, C-terminal domain protein [Dermacoccus sp.
           Ellin185]
 gi|308433146|gb|EFP57046.1| DNA gyrase, B subunit, C-terminal domain protein [Dermacoccus sp.
           Ellin185]
          Length = 723

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 243/724 (33%), Positives = 352/724 (48%), Gaps = 68/724 (9%)

Query: 19  SSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLF 78
           SS ++ K  EIP      NQ   +NY A  +++LEGLE VR RPGMYIG TD + L H  
Sbjct: 2   SSVRVTKVKEIPQVSPSENQ---ENYTARHLQVLEGLEAVRKRPGMYIGSTDGRGLMHCL 58

Query: 79  SEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLH 138
            E+IDNA+DE + GY + IEV L  +G + V DNGRGIPV+  P+    S +E++ T LH
Sbjct: 59  WEIIDNAVDEALGGYCDRIEVILLPDGSVEVRDNGRGIPVDVEPR-TGLSGVEVVFTKLH 117

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL----- 193
           AGGKF   +Y  SGGLHGVG SVVNALS  L V V R +  +   F RG P +       
Sbjct: 118 AGGKFGGGSYTASGGLHGVGASVVNALSSRLDVEVDRASKTYGMSFRRGEPGTFADGDSS 177

Query: 194 --------------------EKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQ 232
                               E   K  R   G+R+ +  D  IF   A FD  +L+   +
Sbjct: 178 DPLAKSPTNPFTPFESGSQLEVVGKARRGVTGSRVRYWADTTIFLKTAQFDYDQLIARAR 237

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGI--PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
             ++L   +      ++ +A   G   P +E F   GG+  + +    + ++       G
Sbjct: 238 QTSFLVPGLTIIIRDERGLAGTPGENGPHEETFLHDGGISEFCEYLAPDAAVTGIWRLQG 297

Query: 291 KT-----------------EKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHES 332
                               +  T    V+ A+ W         S+ N I T +GGTH +
Sbjct: 298 SGSFTETVPVLDESSGHMTSQDVTRECGVDIALRWGTGYETKVRSFVNIIATPKGGTHNT 357

Query: 333 GLRVALTRGIKKYAELTQNKRAI---SIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           G   AL +  KK  E+   K  +    +  DD++     +++V + EP+F GQTK  L +
Sbjct: 358 GFEQALMKVFKKQLEVNARKLKVGNDKVEKDDVLAGLTAVVTVRLAEPQFEGQTKEVLGT 417

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKL----LEWVIERSEERLRRRKQRE-VNRKTAI 444
              +  V   +      +L     +        LE V+   + R+  R  +E   RKTA+
Sbjct: 418 AAVRAIVSKVVEKELSAHLTSTKRDDKAQAALLLEKVVAEMKSRISARAHKETQRRKTAL 477

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKL DC       +ELFIVEGDSA G+   ARN   QA+LP+RGKILNV  A  
Sbjct: 478 ESSSLPGKLKDCRSTDGERSELFIVEGDSALGTGMAARNSEYQALLPIRGKILNVQKASV 537

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
             +  N +   ++Q +G  +   +  + +RY K+I+MTDADVDGAHI +LLLT F++ M 
Sbjct: 538 GDMLKNAECASIIQVVGGGSGRSFDLDMVRYGKIILMTDADVDGAHIRTLLLTLFFRYMR 597

Query: 565 DLIEQKHLFLISPPLFRI------TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
            L+    ++   PPL R+          + +Y + E+  +  +  ++K G+   +  R+K
Sbjct: 598 PLVAAGRVYAAMPPLHRLEVSAQGRAKGEVIYTYSEDEMRATVAAWEKKGRTFKQPQRYK 657

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           GLGEM A QL ET MD   RTL RV +       +  +   + LMG++   R  FI   A
Sbjct: 658 GLGEMDADQLAETTMDPRHRTLRRVTL----KDAEMAEQVFDLLMGSEVAPRKDFIISSA 713

Query: 679 SFID 682
           + +D
Sbjct: 714 NDLD 717


>gi|260775392|ref|ZP_05884289.1| topoisomerase IV subunit B [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608573|gb|EEX34738.1| topoisomerase IV subunit B [Vibrio coralliilyticus ATCC BAA-450]
          Length = 626

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 251/645 (38%), Positives = 359/645 (55%), Gaps = 24/645 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A+ ++V 
Sbjct: 2   TEQYNAGAIEVLNGLEPVRRRPGMY---TDTARPNHLGQEVIDNSVDEALAGHASKVQVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+    S +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + VTV R   ++   F  G  +S L       R  +GT + F PD K F   
Sbjct: 118 VVNALSKRVEVTVRRDGQVYEIAFEHGDKVSDLTVTGTCGRRNKGTSVHFWPDAKYFDSA 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F   RL+   ++KA L   ++  +S      E        ++ +  GLK YL   ++ 
Sbjct: 178 N-FSVTRLINNLRAKAVLCPGLEITFSDKVNGNE-------HKWLYEDGLKDYLAEGVKG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
            +++  E FTG+   +                     SY N I T +GGTH +GLR  L 
Sbjct: 230 YTVLPEEPFTGEFSAETEA-ANWAVIWQPEGGEMITESYVNLIPTAQGGTHVNGLRQGLL 288

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R + +  DD+      +LSV +++P+FAGQTK +L S      V  
Sbjct: 289 DAMREFCEFRNLLPRGVKLTGDDVFDRCSYVLSVKMQDPQFAGQTKERLSSRQTAAFVSG 348

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L + P  A  L E  I  +  R+R    ++V RK       LPGKL DCS 
Sbjct: 349 VVKDAFSLWLNEKPQLAELLAEVCIANAHRRMR--ASKKVVRKKVASGPALPGKLTDCSV 406

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
              + TE+F VEGDSAGGSAKQAR+R  QAV+PLRGKILN     ++++  +Q++ D+  
Sbjct: 407 QDLNRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG    S    E LRY K+ I+ DAD DG HIA+LL   F +    L+E  H+++  PP
Sbjct: 467 ALGIDPDSDNL-ESLRYGKICILADADSDGLHIATLLCALFTRHFKALVEAGHIYVAMPP 525

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+RI  G +  YA D++ K+ +LE   K  K KI + RFKGLGEM   QL+ET MD N R
Sbjct: 526 LYRIDCGKEVFYALDDDEKEGVLERLSKK-KAKINVQRFKGLGEMNPLQLRETTMDPNTR 584

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            L+++ I+      + T + ++ L+G K AD+R  ++Q      +
Sbjct: 585 RLVQLTIDD----SQATMEMMDMLLGKKRADDRRSWLQNNGDLAE 625


>gi|27364066|ref|NP_759594.1| DNA topoisomerase IV subunit B [Vibrio vulnificus CMCP6]
 gi|37678772|ref|NP_933381.1| DNA topoisomerase IV subunit B [Vibrio vulnificus YJ016]
 gi|320157449|ref|YP_004189828.1| topoisomerase IV subunit B [Vibrio vulnificus MO6-24/O]
 gi|27360184|gb|AAO09121.1| DNA topoisomerase IV, B subunit [Vibrio vulnificus CMCP6]
 gi|37197513|dbj|BAC93352.1| topoisomerase IV, subunit B [Vibrio vulnificus YJ016]
 gi|319932761|gb|ADV87625.1| topoisomerase IV subunit B [Vibrio vulnificus MO6-24/O]
          Length = 626

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 249/645 (38%), Positives = 357/645 (55%), Gaps = 24/645 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A+ ++V 
Sbjct: 2   TEQYNAGAIEVLNGLEPVRRRPGMY---TDTARPNHLGQEVIDNSVDEALAGHASKVQVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+    S +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + VTV R   ++   F  G  +S L       R  RGT + F PD K F   
Sbjct: 118 VVNALSKRVEVTVRRDGQVYEIAFEHGDKVSDLTVTGTCGRRNRGTSVHFWPDTKYFDSP 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F   RL+   ++KA L   ++  +S            ++ ++ +  GLK YL   ++ 
Sbjct: 178 N-FSVTRLVNNLRAKAVLCPGLEITFSD-------RVNGKEHQWLYQDGLKDYLIEGVKG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
            +L+  E FTG+   +                     SY N I T +GGTH +GLR  L 
Sbjct: 230 YTLLPEEPFTGQFSAETEA-ADWAVIWQPEGGEMITESYVNLIPTAQGGTHVNGLRQGLL 288

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R + +  +D+      +LSV +++P+FAGQTK +L S      V  
Sbjct: 289 DAMREFCEFRNLLPRGVKLTGEDVFDRCSYVLSVKMQDPQFAGQTKERLSSRQTAAFVSG 348

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L + P  A +L E  I  +  R+R    ++V RK       LPGKL DCS 
Sbjct: 349 VVKDTFSLWLNEKPQLAEQLAEVCIANAHRRMR--ASKKVVRKKIASGPALPGKLTDCSV 406

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TE+F VEGDSAGGSAKQAR+R  QAV+PLRGKILN     ++++  +Q++ D+  
Sbjct: 407 QDLARTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG    S    E LRY K+ I+ DAD DG HIA+LL   F +    L+E  H+++  PP
Sbjct: 467 ALGIDPDSDNL-EGLRYGKICILADADSDGLHIATLLCALFTRHFRALVEAGHIYVAMPP 525

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+RI  G +  YA D+  K  +LE   +  + KI + RFKGLGEM   QL+ET MD N R
Sbjct: 526 LYRIDCGKEVFYALDDAEKDGVLERLSQK-RAKINVQRFKGLGEMNPLQLRETTMDPNTR 584

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            L+++ I+        T + ++ L+G K AD+R  ++Q      +
Sbjct: 585 RLVQLTIDD----SDATMEMMDMLLGKKRADDRRSWLQNNGDMAE 625


>gi|117919182|ref|YP_868374.1| DNA topoisomerase IV subunit B [Shewanella sp. ANA-3]
 gi|117611514|gb|ABK46968.1| DNA topoisomerase IV subunit B [Shewanella sp. ANA-3]
          Length = 628

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 246/645 (38%), Positives = 358/645 (55%), Gaps = 24/645 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y + +I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AG+A  IEV 
Sbjct: 2   TNQYTSDAIEVLNGLDPVKRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHATKIEVV 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V D+GRG+PV+ HP+      +E+ILT LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHTDNSLEVTDDGRGMPVDIHPE-EGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + VTV R   ++   F  G  +  L+      R   GTR+ F PD   F   
Sbjct: 118 VVNALSRRVEVTVRRDGQVYDIAFENGFKVEELKVTGTCGRRNTGTRVHFWPDASYFDSA 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  ++L+ + ++KA L   ++  ++            E  E+Y+  GL  YL+  + +
Sbjct: 178 N-FSNSKLIYLLRAKAVLCPGLRIKFTNK-------HTNEVHEWYYESGLTDYLKAAVGD 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
             ++  E F G   K                 +    SY N I T  GGTH +G R  L 
Sbjct: 230 NLMLPEEPFIGSF-KGQIEAADWAITWLPEGGDAINESYVNLIPTPLGGTHVNGFRQGLL 288

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R I +  +D+   A  ILSV +++P+FAGQTK KL S  +   V  
Sbjct: 289 ESMREFCEFRNLIPRGIKLSPEDIWDRAAFILSVKMQDPQFAGQTKEKLSSRQSSAFVSG 348

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            +RD F  +L  N   A  L +  I  ++ RL+    ++V RK       LPGKL DCS 
Sbjct: 349 IVRDAFSLWLNSNTELAESLADMCINNAQRRLK--ASKKVARKKVTSGPALPGKLTDCSG 406

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 ELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     + ++  +Q++ D+  
Sbjct: 407 QDPMRGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASQEVHDISV 466

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+GC   S     +LRY K+ I+ DAD DG HIA+LL   F +    L+EQ H+++  PP
Sbjct: 467 AIGCDPDSNDI-SELRYGKICILADADSDGLHIATLLCALFLKHYRVLVEQGHVYIAMPP 525

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           LFRI  G    YA DE  K+ IL+    ++ KGK++++RFKGLGEM   QL+ET MD N 
Sbjct: 526 LFRIDIGKDVYYALDEAEKEGILDRITAENKKGKVQVTRFKGLGEMNPLQLRETTMDPNT 585

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFI 681
           R L+++ I+     +++T   ++ L+  K + +R  +++++    
Sbjct: 586 RRLVQLTIDD----VEETDSLMDMLLAKKRSPDRKNWLEDKGDMA 626


>gi|260771893|ref|ZP_05880811.1| topoisomerase IV subunit B [Vibrio metschnikovii CIP 69.14]
 gi|260613185|gb|EEX38386.1| topoisomerase IV subunit B [Vibrio metschnikovii CIP 69.14]
          Length = 643

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 255/645 (39%), Positives = 364/645 (56%), Gaps = 24/645 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AGYA  ++V 
Sbjct: 18  TEQYNAGAIEVLNGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGYATKVQVI 74

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+  N S +E+IL  LHAGGKF N +Y+ SGGLHGVGIS
Sbjct: 75  LHADQSLEVIDDGRGMPVDIHPE-ENVSGVELILCKLHAGGKFSNKSYQFSGGLHGVGIS 133

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + VTV R   ++   F  G  +S L       R  RGT + F P+   + D 
Sbjct: 134 VVNALSKRVEVTVRRDGQVYDIAFEHGEKVSDLTVTGTCGRRNRGTSVHFWPEA-RYFDS 192

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
           A F  +RL+   ++KA L   ++  ++      E         + +  GLK YL   ++ 
Sbjct: 193 ANFSVSRLVNNLRAKAVLCPGLEITFTDKVNNNE-------YRWLYEDGLKDYLAEGVKG 245

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
            +L+  E FTG+  K  T              +    SY N I T +GGTH +GLR  L 
Sbjct: 246 YTLLPEEPFTGEF-KTETEAANWAVIWLPEGGDLITESYVNLIPTPQGGTHVNGLRQGLL 304

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R + +  +D+      +LS+ +++P+FAGQTK +L S      V +
Sbjct: 305 DAMREFCEFRNLLPRGVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQTASFVAS 364

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L + P  A  L E  I  +  R+R    ++V RK       LPGKL DCSQ
Sbjct: 365 VVKDSFSLWLNEKPQLAELLAEVCISNAHRRMR--ASKKVVRKKIASGPALPGKLTDCSQ 422

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TELF+VEGDSAGGSAKQARNR  QA++PLRGKILN     ++++  +Q++ D+  
Sbjct: 423 QDLSRTELFLVEGDSAGGSAKQARNREFQAIMPLRGKILNTWEVSADQVLASQEVHDISV 482

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG    +   E  LRY KV I+ DAD DG HIA+LL   F +    L+   H+++  PP
Sbjct: 483 ALGIDPDNDDLEA-LRYGKVCILADADSDGLHIATLLCALFTRHFRALVRAGHVYVAMPP 541

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+RI  G +  YA D+  K+ I+E      K KI + RFKGLGEM   QL+ET MD N R
Sbjct: 542 LYRIDCGKEVHYALDDNEKKAIIERLSSK-KAKINVQRFKGLGEMNPLQLRETTMDPNTR 600

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            L+++ I+ D    K+T + ++ L+G K AD+R  ++Q      +
Sbjct: 601 RLVQLTIDDD----KETDEMMDMLLGKKRADDRRSWLQRNGDMAE 641


>gi|270263149|ref|ZP_06191419.1| DNA topoisomerase IV subunit B [Serratia odorifera 4Rx13]
 gi|270042837|gb|EFA15931.1| DNA topoisomerase IV subunit B [Serratia odorifera 4Rx13]
          Length = 658

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 250/658 (37%), Positives = 364/658 (55%), Gaps = 26/658 (3%)

Query: 30  PDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEV 89
           P +    +      Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE 
Sbjct: 19  PSNHEKNSTMTQSTYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEA 75

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
           +AG+A  I+V L  +  L V+D+GRG+PV+ HP+      +E+I+  LHAGGKF N  Y+
Sbjct: 76  LAGHAKRIDVILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELIMCRLHAGGKFSNKNYQ 134

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRIT 208
            SGGLHGVGISVVNALS  + V V R   ++S  F  G  +  L       +   GT I 
Sbjct: 135 FSGGLHGVGISVVNALSTRVEVNVKRDGNVYSIAFENGDKVQELAVTGSCGKRNTGTSIH 194

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F PD + F D   F  +RL  + ++KA L   V+  +       E       + + +  G
Sbjct: 195 FWPD-EKFFDSPRFSVSRLSHLLKAKAVLCPGVEIYFIDKLNNTE-------QRWCYQDG 246

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDE 326
           L  YL   +     +    F G           V+WA+ W  E  E    SY N I T +
Sbjct: 247 LTDYLMEAVNGLITLPEAPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQ 303

Query: 327 GGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GGTH +GLR  L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK 
Sbjct: 304 GGTHVNGLRQGLLDAMREFCEFRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKE 363

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIR 445
           +L S      V   ++D F  +L QN   A +L E  I  ++ RLR    ++V RK    
Sbjct: 364 RLSSRQCAAFVSGVVKDAFSLWLNQNVQAAEQLAELAISSAQRRLR--AAKKVVRKKLTS 421

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC+    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+
Sbjct: 422 GPALPGKLADCTSQDLNMTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSD 481

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           ++  +Q++ D+  A+G    S+     LRY K+ I+ DAD DG HIA+LL   F +    
Sbjct: 482 EVLASQEVHDISVAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFSS 540

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           L++  H+++  PPL+RI  G +  YA DEE K  +LE+ K+  KGK  + RFKGLGEM  
Sbjct: 541 LVKGGHVYVAMPPLYRIDLGKEVFYALDEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNP 599

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            QL+ET +D N R L+++ ++ D   +  T   ++ L+  K +++R  ++Q++    D
Sbjct: 600 LQLRETTLDPNTRRLVQLTVSDD--DVVQTLAMMDMLLAKKRSEDRRNWLQDKGDMAD 655


>gi|284028009|ref|YP_003377940.1| DNA gyrase subunit B [Kribbella flavida DSM 17836]
 gi|283807302|gb|ADB29141.1| DNA gyrase, B subunit [Kribbella flavida DSM 17836]
          Length = 678

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 248/686 (36%), Positives = 367/686 (53%), Gaps = 18/686 (2%)

Query: 9   FSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGG 68
            +  P ++           E+P S   ++      YDAS+I++LEGL+ VR RPGMYIG 
Sbjct: 1   MTDEPTETDAIPSADDTGTEVPLSVIPSSV-VEKEYDASAIQVLEGLDAVRKRPGMYIGS 59

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T E+ LHHL  EV+DNA+DE +AGY + I V+L  +G + VVDNGRGIPV+   +   K 
Sbjct: 60  TGERGLHHLVYEVVDNAVDEALAGYCDKIVVTLLADGGVRVVDNGRGIPVDIV-ESEGKP 118

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
            + ++LT LHAGGKF    Y++SGGLHGVG+SVVNALS  L V V +    ++Q F+ G+
Sbjct: 119 AVTVVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSSRLQVDVRKNGKAYTQSFTVGV 178

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
           P + L +     +  GT ITF P P +F     +    L    +  A+L+  ++     +
Sbjct: 179 PDADLAEVG-TSDSNGTTITFWPSPDVFET-TTYSYETLSTRFREYAFLNKGLELVIRDE 236

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +      G+P ++ F +  GL  Y++     R  + S +   +  +      ++E A+ W
Sbjct: 237 RPDHTPEGVPVEQSFKYDDGLVDYVKYLTGIRETVHSNVIAFEAAQADD-SLSLEVAMQW 295

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
                  + ++ NTI T EGGTHE G R ALT  +  + E      K+   +  DD+   
Sbjct: 296 SGSFQESVHTFANTINTHEGGTHEEGFRAALTSLVNSFGEDQGMIKKKEDRLTGDDVREG 355

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              I+SV +  P+F GQTKTKL + + +  V+  + D    +  QNP E  +++      
Sbjct: 356 LTAIISVKLGNPQFEGQTKTKLGNTEVKGFVQRVVNDRLGAWFEQNPAEGREIIRKATAA 415

Query: 426 SEERLRRRKQRE--VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483
           +  R+  RK R+   NRK  +    LPGKL+DC        E++IVEGDSAGGSAK  R+
Sbjct: 416 ASARIAARKARDLARNRKGLLGGGGLPGKLSDCQSTNPEECEVYIVEGDSAGGSAKGGRD 475

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTD 543
              QA+LP+RGKILNV  A  +K+  N ++  ++ ALG      + EE LRY K++IM D
Sbjct: 476 PKFQAILPIRGKILNVEKARIDKVLQNNEVQAIISALGTGIHEDFDEEKLRYHKIVIMAD 535

Query: 544 ADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVY-AHDEEHKQKILE 602
           ADVDG HI +LLLT  ++ M  LIE+ H++   PPL++I     +   A+ E  K  +L 
Sbjct: 536 ADVDGQHIRTLLLTLLFRFMRPLIERGHVYAAQPPLYKIRWSNSAHELAYTEREKDGLLA 595

Query: 603 EFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
              + GK   +     R+KGLGEM   +L ET MD   R LL++ ++          ++ 
Sbjct: 596 AGFEAGKKLPKENATQRYKGLGEMNPQELWETTMDPANRVLLQITLDD----AARADETF 651

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
             LMG   + R  FIQ  A  +  + 
Sbjct: 652 ATLMGDDIEARRNFIQRNAKDVRFLD 677


>gi|283836435|ref|ZP_06356176.1| DNA topoisomerase IV, B subunit [Citrobacter youngae ATCC 29220]
 gi|291067809|gb|EFE05918.1| DNA topoisomerase IV, B subunit [Citrobacter youngae ATCC 29220]
          Length = 630

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 248/647 (38%), Positives = 364/647 (56%), Gaps = 26/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R   +++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGDKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL  + ++KA L   V+  +  +   +E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEVNNSE-------QRWCYQDGLNDYLSEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G    +     TV+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LPTLPEKPFIGNFSGETE---TVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A  L E  I  ++ RLR    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFSLWLNQNVQSAELLAEMAISSAQRRLR--AAKKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKHGHVYVAL 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA  EE K  +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 524 PPLYRIDLGKEVYYALTEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ I+      + T   ++ L+  K +++R  ++QE+    D
Sbjct: 583 TRRLVQLIIDD--EDDQRTNAVMDMLLAKKRSEDRRNWLQEKGDLAD 627


>gi|237729956|ref|ZP_04560437.1| DNA topoisomerase IV subunit B [Citrobacter sp. 30_2]
 gi|226908562|gb|EEH94480.1| DNA topoisomerase IV subunit B [Citrobacter sp. 30_2]
          Length = 630

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 248/647 (38%), Positives = 364/647 (56%), Gaps = 26/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R   +++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGDKVQDLQVVGTCGKRNTGTSVHFWPD-ESFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL  + ++KA L   V+  +  +   +E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEVNNSE-------QRWCYQDGLNDYLSEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G    +     TV+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LPTLPEKPFIGNFSGETE---TVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A  L E  I  ++ RLR    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFSLWLNQNVQSAELLAEMAISSAQRRLR--AAKKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKHGHVYVAL 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA  EE K  +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 524 PPLYRIDLGKEVYYALTEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ I+      + T   ++ L+  K +++R  ++QE+    D
Sbjct: 583 TRRLVQLIIDD--EDDQRTNAMMDMLLAKKRSEDRRNWLQEKGDLAD 627


>gi|146313079|ref|YP_001178153.1| DNA topoisomerase IV subunit B [Enterobacter sp. 638]
 gi|145319955|gb|ABP62102.1| DNA topoisomerase IV subunit B [Enterobacter sp. 638]
          Length = 630

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 247/647 (38%), Positives = 360/647 (55%), Gaps = 26/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  I+V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRIDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + VTV R   + +  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVTVRRDGQVHNIAFENGDKVQELQVIGTCGKRNTGTSVHFWPD-ESFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F   R+  + ++KA L   V+  +  +   +E       + + +  GL  YL   +  
Sbjct: 177 PRFSVTRMTHILKAKAVLCPGVEITFKDEVNNSE-------QRWCYQDGLNDYLGEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G           V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LPTLPEKPFLGNFSGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A  L E  I  ++ R+R    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFSLWLNQNIQTAEMLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREFQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+ +  
Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKNGHVHVAL 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA  EE K  +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 524 PPLYRIDLGKEVYYALTEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPLQLRETTLDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ I+      + T   ++ L+  K +++R  ++QE+    D
Sbjct: 583 TRRLVQLIISD--EDEQQTNAMMDMLLAKKRSEDRRNWLQEKGDMAD 627


>gi|15186713|dbj|BAB62879.1| DNA topoisomerase IV subunit B [Streptococcus agalactiae]
          Length = 619

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 225/630 (35%), Positives = 349/630 (55%), Gaps = 32/630 (5%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIG TD   LHHL  E++DNA+DE ++G+ N I+V ++ +G +TV D+GRG+P   H  
Sbjct: 1   MYIGSTDGTGLHHLVWEIVDNAVDEALSGFGNRIDVIINKDGSITVTDHGRGMPTGMH-- 58

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
              K T+E+I T LHAGGKF    Y+ SGGLHGVG SVVNALS  L V + R   I+ Q+
Sbjct: 59  AMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSVVNALSSWLEVEIIRDGAIYRQR 118

Query: 184 FSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241
           F  G  P++ L+K     ++K GT ++F PD  +F     F    + +  +  A+L   V
Sbjct: 119 FENGGKPVTTLKKIGTAPKSKSGTSVSFMPDQSVFSTI-DFKFNTIAERLKESAFLLKNV 177

Query: 242 KTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
               + ++         E  EF++  G++ +++   E++  ++  +F    E++      
Sbjct: 178 TLTLTDNRSE-----EAEHLEFHYENGVQDFVEYLNEDKETLTPIMFFEGEEQEFHIEVA 232

Query: 302 VEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359
           +++   + +    I S+ N + T +GGTHE+GL+ A+T+ +  YA  T    ++  ++  
Sbjct: 233 LQYNDGFSDN---ILSFVNNVRTKDGGTHETGLKSAITKSMNDYARKTGLLKEKDKNLEG 289

Query: 360 DDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
            D       ILS+ +     +F GQTK KL S  A+  V+  + +   ++L++N   A+ 
Sbjct: 290 SDYREGLSAILSILVPEEHLQFEGQTKDKLGSPLARPIVDGIVSEKLTYFLMENGDLASN 349

Query: 418 LLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGKLADCSQNIAHGTELFIVEGDSA 474
           L+   I+  + R   RK R+ +R     K       GKL       A   EL++VEGDSA
Sbjct: 350 LIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSA 409

Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
           GGSAKQ R+R  QA+LPLRGK+LN A A    I  N++I  ++  +G      +  +D+ 
Sbjct: 410 GGSAKQGRDRKFQAILPLRGKVLNTAKAKMADIIKNEEINTMIHTIGAGVGPDFNIDDIN 469

Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT----KSVY 590
           Y+KVIIMTDAD DGAHI +LLLTFFY+ M  L+E+ H+++  PPL+++++G        Y
Sbjct: 470 YDKVIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGHVYIALPPLYKMSKGKGKKEIVEY 529

Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
           A  +   +++ ++F K       + R+KGLGEM A QL ET M+   RTL+RV I     
Sbjct: 530 AWTDIELEELRQKFGKGSL----LQRYKGLGEMNADQLWETTMNPETRTLIRVTIED--- 582

Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASF 680
            L   +  +N LMG K   R ++I++   F
Sbjct: 583 -LARAERRVNVLMGDKVPPRRQWIEDNVKF 611


>gi|15828843|ref|NP_326203.1| topoisomerase IV subunit B [Mycoplasma pulmonis UAB CTIP]
 gi|14089786|emb|CAC13545.1| TOPOISOMERASE IV SUBUNIT B [Mycoplasma pulmonis]
          Length = 642

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 231/647 (35%), Positives = 343/647 (53%), Gaps = 33/647 (5%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y    +++L+GLE VR RPGMYIG TD   LHHL  E+ DNA+DE +AGYA++I+VSL  
Sbjct: 4   YTVDDLKMLKGLEAVRKRPGMYIGSTDINGLHHLVWEIFDNAVDEALAGYASIIKVSLTK 63

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           N  + V DNGRGIPVE H     KS +E++ T LHAGGKF    Y  SGGLHGVG SVVN
Sbjct: 64  NQSIRVEDNGRGIPVEKH--SSGKSGVELVFTELHAGGKFSEGAYRTSGGLHGVGSSVVN 121

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS EL V+V +    +  KF  G  +     K    NK+GT + F P+ +IF   A F 
Sbjct: 122 ALSKELTVSVFKDGFEYRTKFENGDTIVEKTHKVGPSNKKGTIVEFLPNYEIFKR-AQFL 180

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              + +  +  ++L   +K  +  +           +E F +  G++ ++      +  +
Sbjct: 181 PETISERLREASFLIPNLKIVFYDE-------NQNLRETFNYENGIEAFVDFINNGKKTL 233

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIK 343
           +  +   +T+K        ++     + +  I S+ N + T +GGTHE+  + A T+ + 
Sbjct: 234 NKVVSFSETKKNIELSCAFQYND---DYSETIISFVNNVKTRDGGTHEAAFKSAFTKTLN 290

Query: 344 KYAELTQNKRAIS-IISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENAL 400
            YA   +  +        D       I+S+ I E   EF GQTK KL +++A+  VE  +
Sbjct: 291 DYAIEKKILKGGKTFEGSDFREGLTAIISLKIPESILEFVGQTKDKLGTIEAKNVVEEIV 350

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK---TAIRKLRLPGKLADCS 457
                ++L +   EA K+     +  E R+  RK R   R           L GKL    
Sbjct: 351 SQNLKYWLNEKKQEAEKVFNKFKKAYEARIAARKARNEARTLKSKMKETKILSGKLTPAQ 410

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                  E+F+VEGDSAGGSAK  RNR  QA+LPLRGK++N   +    I  N++I  ++
Sbjct: 411 SKNPKENEIFLVEGDSAGGSAKSGRNRRFQAILPLRGKVINTEKSRLIDILKNEEISTII 470

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            AL       +  ++L+Y K+IIMTDAD DGAHI  LLLTFF++ M++LIE+  +++  P
Sbjct: 471 NALNTGVGEDFEIKNLKYHKIIIMTDADTDGAHIQVLLLTFFFRYMHELIEKGMVYVALP 530

Query: 578 PLFRIT----QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           PLF++T    +  K  YA DE   ++I++         +EI R+KGLGEM A QL ET M
Sbjct: 531 PLFKVTFKNDKKNKIAYAWDENELKEIVK------NKSVEIQRYKGLGEMNADQLWETTM 584

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           +   R+L+++ I          +  ++ LMG   + R ++I +   F
Sbjct: 585 NPETRSLVKITIQD----AAIVERRVSTLMGENVEIRKEWINKNVKF 627


>gi|238918166|ref|YP_002931680.1| DNA topoisomerase IV subunit B [Edwardsiella ictaluri 93-146]
 gi|238867734|gb|ACR67445.1| DNA topoisomerase IV, B subunit, putative [Edwardsiella ictaluri
           93-146]
          Length = 631

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 255/649 (39%), Positives = 362/649 (55%), Gaps = 27/649 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  IEV L
Sbjct: 4   SSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHATRIEVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V+DNGRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGISV
Sbjct: 61  HPDQSLEVIDNGRGMPVDIHPE-EGVPAIELILCRLHAGGKFSNKNYQFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + V+V R   I+   F  G  +  L     V R   GT + F PD + F    
Sbjct: 120 VNALSRRVEVSVRRDGQIYQMAFENGEKVEDLHVSGTVGRRNTGTSVHFWPDAQFFDSAR 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L   V+  +      +E       + + +  GL  YL   +   
Sbjct: 180 -FSVSRLTHLLKAKAVLCPGVEILFRDLVNGSE-------QRWCYQDGLTDYLMESVNGL 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +  + FTG           V+WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 VTLPEQPFTGTFASDTE---AVDWALLWLPEGGELLTESYVNLIPTPQGGTHVNGLRQGL 288

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E      R + + +DD+      +LSV +++P+FAGQTK +L S      V 
Sbjct: 289 LDAMREFCEFRNLLPRGVKLTADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             ++D F  +L QN   A  L E  I  ++ R+R    ++V RK       LPGKLADCS
Sbjct: 349 GVVKDAFSLWLNQNVQSAELLAELAINSAQRRMR--AAKKVVRKKLTSGPALPGKLADCS 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
               + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+ 
Sbjct: 407 AQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S      LRY KV I+ DAD DG HIA+LL   F +    L++  H+++  P
Sbjct: 467 VAIGIDPDSDDL-SQLRYGKVCILADADSDGLHIATLLCALFVRHFRPLVQAGHVYVAMP 525

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G +  YA  EE K  +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N 
Sbjct: 526 PLYRIDLGKEVFYALSEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPLQLRETTLDPNT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDVG 685
           R L+++ I      ++ T   ++ L+  K A++R  ++QE  +  + + 
Sbjct: 585 RRLVQLAIED--EDMERTVAVMDMLLAKKRAEDRRNWLQENGNLAE-LD 630


>gi|261495914|ref|ZP_05992336.1| DNA topoisomerase 4 subunit B [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261308435|gb|EEY09716.1| DNA topoisomerase 4 subunit B [Mannheimia haemolytica serotype A2
           str. OVINE]
          Length = 635

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 255/650 (39%), Positives = 369/650 (56%), Gaps = 26/650 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           +   Y A  I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE ++G+A+ I+V
Sbjct: 2   SEKRYGADEITVLKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALSGFADKIDV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +  L VVDNGRG+PV+ H      S +E+ILT LHAGGKF N  Y  SGGLHGVGI
Sbjct: 59  ILHADNSLEVVDNGRGMPVDIHS-TEKISGVELILTKLHAGGKFSNKNYTFSGGLHGVGI 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS+ + + + R   ++S  F+ G+ +  L       + + GT + F P+PK F  
Sbjct: 118 SVVNALSERVEIQIKRGGEVYSIAFANGVKVEDLTVIGTCPKKQTGTTVRFYPNPKYFDS 177

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F  +RL  + ++KA L  ++   +       E       E +Y+  GL  YL   L 
Sbjct: 178 PR-FSVSRLRHLLRAKAVLCPKLTINFIDKINNTE-------ESWYYEDGLSDYLSEALN 229

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336
               + +  F G    +      V WA+ W  E  E    SY N I T +GGTH +GLR 
Sbjct: 230 GYETVPNPPFIGDVTAETE---AVSWALTWLPEGGELVAESYVNLIPTAQGGTHVNGLRN 286

Query: 337 ALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            L + + ++ E+     + + + +DD+      +LS+ I+EP+FAGQTK +L S  A   
Sbjct: 287 GLLKAMVEFCEIHNLLPKGVKLTADDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSY 346

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           V++ L+D F  +L QN      + E  I  ++ R+R    ++V RK  +    LPGKLAD
Sbjct: 347 VDSTLKDAFSLWLNQNVQTGKLIAEMAISSAQSRMR--AAKKVVRKKLVSGPALPGKLAD 404

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C+      TELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN     S+++  +Q++ D
Sbjct: 405 CTAQDLSRTELFLVEGDSAGGSAKQARDKEYQAILPLRGKILNTWEVSSDQVLASQEVHD 464

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  ALG    S    E+LRY KV I+ DAD DG HIA+LL   F +    L++  H+++ 
Sbjct: 465 IAVALGIDPDSDNL-EELRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQNGHVYVA 523

Query: 576 SPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
            PPL+RI  G  +  YA DE  K+ IL    K  KGK  + RFKGLGEM  SQL+ET MD
Sbjct: 524 MPPLYRIDIGKDEVHYALDEAEKEAILARLAKK-KGKPNVQRFKGLGEMNPSQLRETTMD 582

Query: 635 ANKRTLLRVEINKDLNSLK-DTQDSINKLMGTK-ADERFKFIQERASFID 682
            + R L+++  +      + +T + ++ L+G K A++R +++Q R    D
Sbjct: 583 PSTRRLVQLTFDDTAEEGELNTFEIMDMLLGKKRAEDRKQWLQNRGDEAD 632


>gi|219121994|ref|XP_002181340.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407326|gb|EEC47263.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 727

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 254/710 (35%), Positives = 378/710 (53%), Gaps = 39/710 (5%)

Query: 5   SIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGM 64
           S + FS  P            +    D+   A+  A+ +Y A  I +L+GL+PVR RPGM
Sbjct: 27  SCEAFSLYPQARSRPFSNPHYATVEADAVNGASSVAAQSYGAGQITVLKGLDPVRKRPGM 86

Query: 65  YIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKF 124
           YIG T    LHHL  EV+DN +DE +AG+A  +  ++  +G LTV D+GRGIP + H + 
Sbjct: 87  YIGSTGPDGLHHLVWEVVDNCVDEALAGHATFVTTTIHADGSLTVTDDGRGIPTDLHSE- 145

Query: 125 PNKSTLEIILTTLHAGGKFD----NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
             KS LE +LT LHAGGKFD    NS Y++SGGLHGVGISVVNALS+ +HV V R   ++
Sbjct: 146 TGKSALETVLTELHAGGKFDNQGSNSGYKVSGGLHGVGISVVNALSEFVHVKVDRTPELY 205

Query: 181 SQKFSRGIPLSPLEKKEK-----VRNKRGTRITFRPDPKIF-----GDKAGFDAARLLKM 230
             +F RG+P  PL+  +K      + K GT +TF PD K+F          FD++RL   
Sbjct: 206 QMRFERGVPTGPLQNLDKLKTLLSKRKSGTSVTFLPDLKVFKGDNGKPDITFDSSRLKGR 265

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
               AYL+  +      +++   +      + FY  GGL  Y +     ++ +     + 
Sbjct: 266 MDEIAYLNAGLVLTLKDERKSPGR---GRLQVFYHAGGLAEYAELLCRTKTPLFQGTTSS 322

Query: 291 KTEK-----KGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKY 345
           + +K     K +         +       I S+CN I T +GG+H  GL+  LTR + + 
Sbjct: 323 RKKKPARKQKDSASDDDALRWSSDMYAESILSFCNNIRTRDGGSHVEGLKACLTRTVNQA 382

Query: 346 AELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDP 403
           A+ +   +    ++  + +      I+SV + EPEF GQTK +L + + +  V++ L   
Sbjct: 383 AKRSNKAKEGAANLPGEFIREGLTAIVSVSVSEPEFEGQTKGRLGNPEVRPAVDSLLSAE 442

Query: 404 FDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAH 462
                   P     +              +  R++  RKT +    LPGKLADC+     
Sbjct: 443 LTKLFDFRPEILDAIYNKASSAQAAAAAAKAARDMVRRKTLLTSTILPGKLADCASRDPE 502

Query: 463 GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
            +E+FIVEGDSA GSAKQ R+R  QA+LPLRGKILN+  A +E+I  N ++  L+ ALG 
Sbjct: 503 ESEIFIVEGDSAAGSAKQGRDRRTQAILPLRGKILNIERAATERIYQNTELQGLISALGL 562

Query: 523 RTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581
             +    +   LRY +++IMTDADVDGAHI  LLLTFFY+   +L+E  H+++  PPL++
Sbjct: 563 GVKGSEFDPKSLRYGRIVIMTDADVDGAHIRVLLLTFFYRYQRELVENGHVYIAQPPLYK 622

Query: 582 ITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           ++ G     K  YA ++  +  ++   +    GK+ + RFKGLGEM+  QL  T MD  +
Sbjct: 623 VSVGSGRSRKEGYAFNDTERNTVM--MQALAAGKVSLQRFKGLGEMMPEQLWSTTMDPER 680

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF--IDDVG 685
           RT+L+V +N           +++ LMG     R +FI  +A    +DD+ 
Sbjct: 681 RTMLQVTVND----ASMADQTLSILMGDTVAPRKEFISTQAETLRVDDLD 726


>gi|240255313|ref|NP_187638.4| ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)
           [Arabidopsis thaliana]
          Length = 693

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 243/703 (34%), Positives = 378/703 (53%), Gaps = 58/703 (8%)

Query: 29  IPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDE 88
                +    S S +Y +  I++LEGL+PVR RPGMYIG T  + LHHL  E++DNA+DE
Sbjct: 2   SSTMESLQESSTSKDYSSEHIQVLEGLDPVRKRPGMYIGSTGSRGLHHLVYEILDNAIDE 61

Query: 89  VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST- 147
             AG+A+ I+V L  +  +++ DNGRGIP + HP    KS+LE +LT LHAGGKF   + 
Sbjct: 62  AQAGFASKIDVVLHSDDSVSISDNGRGIPTDLHP-ATGKSSLETVLTVLHAGGKFGGKSS 120

Query: 148 -YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK---EKVRNKR 203
            Y +SGGLHGVG+SVVNALS+ L V V R    F QK+SRG P++ L       + R  +
Sbjct: 121 GYSVSGGLHGVGLSVVNALSEALEVIVRRDGMEFQQKYSRGKPVTTLTCHVLPPESRGTQ 180

Query: 204 GTRITFRPDPK---IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
           GT I F PD +   +F     FD   +    +  A+L+ +V      + +  E+      
Sbjct: 181 GTCIRFWPDKEGFALFTTAIQFDHNTIAGRIRELAFLNPKVTISLKKEDDDPERDV---Y 237

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCN 320
            E+++ GGL  Y+     ++  +   +   K     T   +++W       +  +  Y N
Sbjct: 238 SEYFYAGGLTEYVSWLNTDKKPLHDVLGFRKEINGSTVDVSLQWCS--DAYSDTMLGYAN 295

Query: 321 TILTDEGGTHESGLRVALTRGIKK---------------YAELT---------------- 349
           +I T +GGTH  G++ +LTR +                 Y+                   
Sbjct: 296 SIRTIDGGTHIEGVKASLTRTLNSLAKKLKVIKVKGYIIYSSPWIETKFKYSSALKRHAL 355

Query: 350 ---QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
               N++ IS+  + +      I+SV +  PEF GQTKT+L + + ++ V+ ++++    
Sbjct: 356 RTINNEKDISLSGEHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTE 415

Query: 407 YLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTE 465
           YL  +P     ++   +   +  L  ++    V  K+ ++   LPGKLADCS      +E
Sbjct: 416 YLELHPDVLESIISKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPAESE 475

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
           +FIVEGDSAGGSAKQ R+R  QA+LPLRGKILN+       +  N++I +L+  LG   +
Sbjct: 476 IFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVK 535

Query: 526 -SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ 584
              + +E+LRY K+II+TDADVDGAHI +LLLTFF++    L +   +++  PPLF++ +
Sbjct: 536 GEDFNKENLRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVER 595

Query: 585 GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644
           G ++ Y +D+   +KI   F   G     I RFKGLGEM+ +QL ET M+ + R L ++ 
Sbjct: 596 GKQAHYCYDDAALKKITASFP--GNASYNIQRFKGLGEMMPAQLWETTMNPDTRILKQLV 653

Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERAS--FIDDVG 685
           ++       +T    + LMG + D R + I+  A+   ++++ 
Sbjct: 654 VDD----AAETNMVFSSLMGARVDVRKELIKSAATRMNLENLD 692


>gi|269794905|ref|YP_003314360.1| DNA topoisomerase IV subunit B [Sanguibacter keddieii DSM 10542]
 gi|269097090|gb|ACZ21526.1| DNA topoisomerase IV subunit B [Sanguibacter keddieii DSM 10542]
          Length = 709

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 236/708 (33%), Positives = 348/708 (49%), Gaps = 65/708 (9%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
               SA  +Y +  + +LEGLE VR RPGMYIG TD + L H   E+IDN++DE +AG+ 
Sbjct: 1   MTTASAESSYTSRHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALAGHC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             I + L  +  +TV D+GRGIPV+   K    + +E++ T LHAGGKF   +Y  SGGL
Sbjct: 61  TRIGIVLHADTSVTVTDDGRGIPVDIESK-TGLTGVEVVFTKLHAGGKFGGGSYTASGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP-LSPLEKKEKVRN------------ 201
           HGVG SVVNALS  L V V R + +    F RG P L    K     +            
Sbjct: 120 HGVGASVVNALSARLDVEVDRASKVHKMTFRRGEPGLFDDPKTGPSPDSAFTPFVSNSEL 179

Query: 202 ---------KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--E 250
                      GTR+ +  D ++F   A F    L+   +   +L   +      ++  E
Sbjct: 180 AIVGKAKRGTTGTRVRYWADRQVFPKTAVFAYDELVTRVRQTTFLVPGLTITVRDERGLE 239

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------K 294
                  P +E F   GG   +++    +  + ++   TG+                  +
Sbjct: 240 GTPGADGPHEETFVHHGGTVDFVEFLAPDTPVTATWHLTGEGSFKETVPVLDDRGHMVAQ 299

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR 353
           + +    V+ A+ W      E+ ++ N I T +GG+H SG    L + ++K  E    K 
Sbjct: 300 EVSRDCEVDLALRWGTGYDTEVRTFVNIISTPKGGSHLSGFEAGLLKVMRKAVETNARKL 359

Query: 354 AISII-------SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RTVENALRD 402
            +S          DD++     +L+V + EP+F GQTK  L +   +    R VE  +  
Sbjct: 360 KVSTKDNAERIEKDDVLAGLTAVLTVRLAEPQFEGQTKEVLGTAPVRAIVARVVEQQIGA 419

Query: 403 PFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK-TAIRKLRLPGKLADCSQNIA 461
                      +A  L++ V+     RL  RKQ+E++R+  A+    LP KLADC  +  
Sbjct: 420 MLTSAKRDEKTQAALLMDKVVAEMRARLSARKQKEISRRKNALETSSLPTKLADCRSDDV 479

Query: 462 HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
             +ELFIVEGDSA G+AK AR+   QA+LP+RGKILNV  A    +  N +   ++Q LG
Sbjct: 480 ARSELFIVEGDSALGTAKLARSSDFQALLPIRGKILNVQKASVSDMLRNAECAAIIQVLG 539

Query: 522 CRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581
             +   +  E  RY KV++MTDADVDGAHI +LLLT F++ M  L++   ++   PPL R
Sbjct: 540 AGSGRSFDLEAARYGKVVLMTDADVDGAHIRTLLLTLFFRYMRPLVDSGRVYAAVPPLHR 599

Query: 582 I------TQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMD 634
           +      ++  + +Y + E     +L++  + GK  K +I R+KGLGEM A QL ET MD
Sbjct: 600 VEVIGAGSRKNEYIYTYSEAELAAVLKKLDRSGKRYKDDIQRYKGLGEMDADQLAETTMD 659

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
              RTL RV         ++ +     LMG+    R  FI   AS +D
Sbjct: 660 PRHRTLRRVT----AEHAENAERVFELLMGSDVAPRKDFIVAGASDLD 703


>gi|288916706|ref|ZP_06411081.1| DNA gyrase, B subunit [Frankia sp. EUN1f]
 gi|288351961|gb|EFC86163.1| DNA gyrase, B subunit [Frankia sp. EUN1f]
          Length = 692

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 249/699 (35%), Positives = 354/699 (50%), Gaps = 67/699 (9%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YDASSI++LEGL+ VR RPGMYIG T E+ LHHL  EV+DNA+DE +AGY + I V+L  
Sbjct: 3   YDASSIKVLEGLDAVRKRPGMYIGSTGERGLHHLVYEVVDNAVDEALAGYCDTITVTLLA 62

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G + V DNGRGIPV  HP      T+E++LTTLHAGGKFD   Y +SGGLHGVG+SVVN
Sbjct: 63  DGGVRVTDNGRGIPVGEHP-VKKIPTVELLLTTLHAGGKFDGQAYAVSGGLHGVGVSVVN 121

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS  L V V      + Q +    P +PL K    +      I+F  DP IF     + 
Sbjct: 122 ALSTRLDVAVETDGHSWFQPYVASRPAAPLAKTGTSKKTGT-TISFWADPTIFETTT-YK 179

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK----------------------- 260
              L +  Q  A+L+  +      ++  A K                             
Sbjct: 180 YETLYRRLQEMAFLNKGLSITLRDERSAAAKNPALAAKAAEAAEAAAAAGEAEAPAAETA 239

Query: 261 --------------------EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                                 F +  GL  ++      +  +   + + +++  G    
Sbjct: 240 AVEASSAPAAAAEEVTEPVEVTFKYDNGLVDFVGHLNATKDAVHRSVISLESKGTGI--- 296

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI-- 357
             E A+ W       + ++ NTI T EGGTHE G R ALT  +  YA+     + +    
Sbjct: 297 EAELAMQWNSGYNESVYTFANTINTHEGGTHEEGFRAALTSAVNAYAKDQNLLKPVKAGS 356

Query: 358 -------ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
                    DD+      I+SV + +P+F GQTKTKL + +A++ V+         +   
Sbjct: 357 KNTDERLSGDDIREGLTAIISVKLAQPQFEGQTKTKLGNTEAKKFVQEMCYAALKDWFEV 416

Query: 411 NPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           N  EA  ++   ++    R+  R+ R+   RK  +    LPGKL+DC        EL+IV
Sbjct: 417 NRTEARAIVSKALDAQRARIAARQARDLTRRKGLLGGTGLPGKLSDCQYTDPERCELYIV 476

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           EGDSAGGSAK  R+   QA+LPLRGKILNV  A  +++  N ++  L+QALG      + 
Sbjct: 477 EGDSAGGSAKGGRDSKFQAILPLRGKILNVEKARIDRVLKNTEVQALIQALGTGIHDDFD 536

Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV 589
              LRY K+++M DADVDG HI +LLLT  ++ M  L+E  H+FL  PPL++I  G +  
Sbjct: 537 IAKLRYHKIVLMADADVDGQHIRTLLLTLLFRFMRPLVEAGHVFLAQPPLYKIKWGREDW 596

Query: 590 -YAHDEEHKQKILEEFKKHGKG--KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646
            YA+ +  +  +LE   + G+   K  I RFKGLGEM A++L +T MD ++R LL+V ++
Sbjct: 597 EYAYSDRERDGLLERGTEAGRKLPKDAIQRFKGLGEMNATELWDTTMDPDRRILLQVTLD 656

Query: 647 KDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
                     +  + LMG   D R  FIQ  A  +  + 
Sbjct: 657 D----AAVADELFSVLMGEDVDARRSFIQRNAKDVRFLD 691


>gi|317049581|ref|YP_004117229.1| DNA topoisomerase IV subunit B [Pantoea sp. At-9b]
 gi|316951198|gb|ADU70673.1| DNA topoisomerase IV, B subunit [Pantoea sp. At-9b]
          Length = 631

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 249/648 (38%), Positives = 367/648 (56%), Gaps = 26/648 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           +  +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  +EV
Sbjct: 2   SQSSYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVEV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGI
Sbjct: 59  ILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS  + VTV R   ++   F  G  +  L     V +   GT + F PD + F D
Sbjct: 118 SVVNALSKRVEVTVRRNGEVYDIAFENGEKVQDLHVTGTVAKRNTGTSVHFWPD-ESFFD 176

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F  +RL  + ++KA L   V+  +       E       + + +  GL  YL   + 
Sbjct: 177 SPRFSVSRLSHLLKAKAVLCPGVEIVFKDQVNNTE-------QRWCYQDGLTDYLCEAVN 229

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336
               +  + F G    +      V+WA+ W  E  E    SY N I T +GGTH +GLR 
Sbjct: 230 GLPTLPEKPFVGSFAGEVE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 286

Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      
Sbjct: 287 GLLDAMREFCEFRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 346

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           V   ++D F  +L QN   A +L E  I  ++ R+R    ++V RK       LPGKLAD
Sbjct: 347 VSAVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C+    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D
Sbjct: 405 CTAQDLNKTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 464

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++ 
Sbjct: 465 ISVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRTLVQNGHVYVA 523

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+RI  G +  YA DE+ K+ +LE+ K+  KGK  + RFKGLGEM   QL+ET +D 
Sbjct: 524 MPPLYRIDLGKEVYYALDEDEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPLQLRETTLDP 582

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           N R L+++ ++ D   ++ T   ++ L+  K +++R  ++QE+    D
Sbjct: 583 NTRRLVQLTVSDD--DVEQTLRVMDMLLAKKRSEDRRNWLQEKGDLAD 628


>gi|311278050|ref|YP_003940281.1| DNA topoisomerase IV, B subunit [Enterobacter cloacae SCF1]
 gi|308747245|gb|ADO46997.1| DNA topoisomerase IV, B subunit [Enterobacter cloacae SCF1]
          Length = 631

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 252/646 (39%), Positives = 364/646 (56%), Gaps = 26/646 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  +EV L
Sbjct: 4   SSYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVEVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGISV
Sbjct: 61  HADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + V V R   I+S  F  G  +  L     V +   GT + F PD + F D  
Sbjct: 120 VNALSKRVEVNVRRDGQIYSIAFENGEKVEELHVTGTVGKRNTGTSVHFWPD-ESFFDSP 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L   V+  +      +E       + + +  GL  YL   +   
Sbjct: 179 RFSVSRLTHLLKAKAVLCPGVEIVFKDRVNDSE-------QTWCYADGLNDYLCEAVNGL 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
            L+  + F G           V+WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 PLLPEKPFVGSFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGL 288

Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V 
Sbjct: 289 LDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             ++D F  +L QN   A  L E  I  ++ RLR    ++V RK       LPGKLADC+
Sbjct: 349 GVVKDAFSLWLNQNVQAAELLAEMAISSAQRRLR--AAKKVVRKKLTSGPALPGKLADCT 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
               + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+ 
Sbjct: 407 AQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    ++++ H+++  P
Sbjct: 467 VAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRAVVKEGHVYVAMP 525

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G +  YA DEE K  +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N 
Sbjct: 526 PLYRIDLGKEVYYALDEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPNT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++ I+      + T   ++ L+  K +++R  ++QE+    D
Sbjct: 585 RRLVQLTISD--EDEQQTDAVMDMLLAKKRSEDRRNWLQEKGDMAD 628


>gi|238750922|ref|ZP_04612419.1| DNA topoisomerase 4 subunit B [Yersinia rohdei ATCC 43380]
 gi|238710836|gb|EEQ03057.1| DNA topoisomerase 4 subunit B [Yersinia rohdei ATCC 43380]
          Length = 631

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 249/648 (38%), Positives = 361/648 (55%), Gaps = 26/648 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
              +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  I+V
Sbjct: 2   TESSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARRIDV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N +Y+ SGGLHGVGI
Sbjct: 59  ILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKSYQFSGGLHGVGI 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS  + VTV R + I+S  F  G  +  L+      +   GT + F PD   F  
Sbjct: 118 SVVNALSKRVEVTVRRDSQIYSIAFENGDKVQDLQVIGTCGKRNTGTSVHFWPDVSFFDS 177

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F  +RL  + ++KA L   V+  +       E       + + +  GL  YL   + 
Sbjct: 178 PR-FSVSRLSHLLKAKAVLCPGVEIIFKDKVNNTE-------QRWCYADGLTDYLMEAVN 229

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336
               +  + F G           ++WA+ W  E  E    SY N I T +GGTH +GLR 
Sbjct: 230 GWVTLPEDPFVGSFAGDTE---AIDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 286

Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            L   ++ + E      R + + +DD+      +LSV +++P+FAGQTK +L S      
Sbjct: 287 GLLDAMRDFCEYRNILPRGVKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 346

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           V   ++D F  +L QN   A +L E  I  ++ R+R    ++V RK       LPGKLAD
Sbjct: 347 VSGVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C+      TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D
Sbjct: 405 CTSQDLSMTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 464

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  A+G    S+     LRY K+ I+ DAD DG HIA+LL   F +    L+   H+++ 
Sbjct: 465 ISVAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVRNGHVYVA 523

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+RI  G +  YA DEE K  +LE+ K+  +GK  + RFKGLGEM   QL+ET +D 
Sbjct: 524 MPPLYRIDLGKEVFYALDEEEKAGVLEQLKRK-RGKPNVQRFKGLGEMNPLQLRETTLDP 582

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           N R L+++ I  D   +  T   ++ L+  K +++R  ++QE+    +
Sbjct: 583 NTRRLVQLTIGDD--DIDKTMAMMDMLLAKKRSEDRRNWLQEKGDTAE 628


>gi|288940508|ref|YP_003442748.1| DNA topoisomerase IV subunit B [Allochromatium vinosum DSM 180]
 gi|288895880|gb|ADC61716.1| DNA topoisomerase IV, B subunit [Allochromatium vinosum DSM 180]
          Length = 634

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 249/646 (38%), Positives = 359/646 (55%), Gaps = 25/646 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YDAS+I +L+GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A  I V+L  
Sbjct: 5   YDASAIEVLQGLDPVRKRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHAKRISVTLHA 61

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G L V D+GRG+PV+ HP+   +  +E+ILT LHAGGKF++  Y  SGGLHGVG+SVVN
Sbjct: 62  DGSLEVEDDGRGMPVDIHPQ-EGRPGVEVILTKLHAGGKFNSDNYRFSGGLHGVGVSVVN 120

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAGF 222
           ALS  L V V R    ++  F  G  +S L+    V+ N RGTR+ F PDP  F     F
Sbjct: 121 ALSRHLEVWVKRGGQEYNMAFKDGNKVSDLDVVGTVKRNDRGTRLRFWPDPGYFDSP-KF 179

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L  + Q+KA L   ++  +  +    E       + + +  GL+ YL   L     
Sbjct: 180 AVRPLTHLLQAKAVLCPGLEVRFRDETSGEE-------QVWCYQDGLQDYLLQSLSGVET 232

Query: 283 ISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPEI---TSYCNTILTDEGGTHESGLRVAL 338
           + SE F G  E +       + W               SY N I T +GGTH +GLR  L
Sbjct: 233 LPSEPFVGDMEGRTEAASWALVWLPEPIRAGGGEPIAESYVNLIPTVQGGTHVNGLRTGL 292

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           T  ++++ E      R + +  +D+      ILSV + +P+F+GQTK +L S +    V 
Sbjct: 293 TEAVREFCEFRNLLPRGVKLAPEDVWNRVSYILSVKLLDPQFSGQTKERLSSRECAAFVS 352

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             ++D F  +L Q+  E  ++ E  I  ++ RLR    R V RK   +   LPGKLADC+
Sbjct: 353 GVVKDSFSLWLNQHVAEGERIAELAIGAAQARLR--AGRTVTRKKITQGPALPGKLADCT 410

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                  ELF+VEGDSAGGSAKQAR+R  QA+LPLRGKILN      E++  +Q++ D+ 
Sbjct: 411 ATDPERGELFLVEGDSAGGSAKQARDREFQAILPLRGKILNTWEVAPEEVLASQEVHDIA 470

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S      LR+ K+ I+ DAD DGAHIA+LL   F +    L+ + H+++  P
Sbjct: 471 VAIGVDPGSDDL-SRLRFGKICILADADSDGAHIATLLCALFLKHFRRLVAEGHVYVAMP 529

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDAN 636
           PL+RI  G +  YA D++ K+ IL+       KGK+ + RFKGLGEM  +QL+ET +  +
Sbjct: 530 PLYRIDVGKQVYYALDDDEKKGILDRIAAEKIKGKVNVQRFKGLGEMNPAQLRETTIHPD 589

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            R L+++ I+ D  + +        L   +A +R  ++QE+    +
Sbjct: 590 TRRLVQLTIDDDRETDELLDRL---LAKKRAADRRAWLQEKGDLAE 632


>gi|261819682|ref|YP_003257788.1| DNA topoisomerase IV subunit B [Pectobacterium wasabiae WPP163]
 gi|261603695|gb|ACX86181.1| DNA topoisomerase IV, B subunit [Pectobacterium wasabiae WPP163]
          Length = 631

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 252/648 (38%), Positives = 363/648 (56%), Gaps = 26/648 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A  +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  I+V
Sbjct: 2   AQSSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARRIDV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF    Y+ SGGLHGVGI
Sbjct: 59  ILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSGKNYQFSGGLHGVGI 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS  + VTV R   ++   F  G  +  L       R   GTR+ F PD + F D
Sbjct: 118 SVVNALSTRVEVTVRRDGQVYDIAFENGDKVQELTVTGTCGRRNTGTRVHFWPD-ETFFD 176

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
            A F  +RL  + ++KA L   V+  +       E       + + +  GL  YL   + 
Sbjct: 177 SARFSVSRLTHLLKAKAVLCPGVEIVFKDKVNNTE-------QRWCYQDGLNDYLCEAIN 229

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336
               +  + F G    +      V+WA+ W  E  +    SY N I T  GGTH +GLR 
Sbjct: 230 GLITLPEKPFLGSITGETE---AVDWALLWLPEGGDLLTESYVNLIPTPMGGTHVNGLRQ 286

Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            L   ++++ E      R + + +DD+      +LSV ++EP+FAGQTK +L S      
Sbjct: 287 GLLDAMREFCEFRNILPRGVKLSADDIWERCAYVLSVKMQEPQFAGQTKERLSSRQCAAF 346

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           V   ++D F  +L QN   A +L E  I  ++ R+R    ++V RK       LPGKLAD
Sbjct: 347 VSGVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C+      TELF+VEGDSAGGSAKQAR R  QA++PL+GKILN     S+++  +Q++ D
Sbjct: 405 CTSQDLSRTELFLVEGDSAGGSAKQAREREFQAIMPLKGKILNTWEVSSDEVLASQEVHD 464

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++ 
Sbjct: 465 ISVAIGIDPDSTDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVQGGHVYVA 523

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+RI  G +  YA DEE K  +LE+ K+  +GK  + RFKGLGEM   QL+ET +D 
Sbjct: 524 MPPLYRIDLGKEVYYALDEEEKAGVLEQLKRK-RGKPNVQRFKGLGEMNPPQLRETTLDP 582

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           N R L+++ IN     ++ T   ++ L+  K +++R  ++QE+   ++
Sbjct: 583 NTRRLVQLTIND--EEMEQTMAMMDMLLAKKRSEDRRNWLQEKGDKVE 628


>gi|289827109|ref|ZP_06545898.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
          Length = 631

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 241/650 (37%), Positives = 360/650 (55%), Gaps = 26/650 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + VTV R   +++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVTVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ESFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL+ + ++KA L   V+  +  +   +E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLMHVLKAKAVLCPGVEITFKDEVNNSE-------QRWCYQDGLNDYLGEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G    +      V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LPTLPEKPFIGNFNGETE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A +L E  I  ++ RLR   ++    K +    R  G     
Sbjct: 347 SGVVKDAFSLWLNQNVQAAEQLAEMAIASAQRRLR-ADKKSGTTKNSPAVRRCRGNWRTV 405

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            + I   TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+
Sbjct: 406 PRRILIVTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 465

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 466 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVKNGHVYVAL 524

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA  EE K  +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 525 PPLYRIDLGKEVYYALTEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 583

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDVG 685
            R L+++ I+      + T   ++ L+  K +++R  ++QE+    D + 
Sbjct: 584 TRRLVQLTISD--EDDQRTNAMMDMLLAKKRSEDRRNWLQEKGDLAD-LD 630


>gi|253991001|ref|YP_003042357.1| DNA topoisomerase IV subunit B [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782451|emb|CAQ85615.1| topoisomerase IV subunit B [Photorhabdus asymbiotica]
          Length = 631

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 250/646 (38%), Positives = 369/646 (57%), Gaps = 26/646 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  IEV L
Sbjct: 4   SSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHAKHIEVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V+D+GRG+PV+ HP+    S +E+IL+ LHAGGKF N  Y+ SGGLHGVGISV
Sbjct: 61  HSDQSLEVIDDGRGMPVDIHPE-EGVSAVELILSRLHAGGKFSNKNYQFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + VTV R + ++   F  G  +  L       +   GT + F PD + F D  
Sbjct: 120 VNALSKRIEVTVRRSSQVYQIAFENGDKVQELAVIGSCGKRNTGTSVHFWPD-ESFFDSP 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F A+RL  + ++KA L   V+  +       E       +++ +  GL  YL   +   
Sbjct: 179 RFSASRLTHLLKAKAVLCPGVEIVFKDKINDTE-------QKWCYADGLTDYLMAAVNGL 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +    F G    +      V+WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 MTLPEAPFVGAFSGETE---AVDWALLWLPEGGELLAESYVNLIPTMQGGTHVNGLRQGL 288

Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E      R + + +DD+      +LSV +++P+FAGQTK +L S  +   V 
Sbjct: 289 LDAMREFCEFRNILPRGVKLSADDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQSAAFVS 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             ++D F  +L QN  EA +L E  I  ++ R+R    ++V RK       LPGKLADC+
Sbjct: 349 GVVKDAFSLWLNQNVQEAEQLAELAIASAQRRMR--AAKKVVRKKLTSGPALPGKLADCT 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
               + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+ 
Sbjct: 407 SQDLNFTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  P
Sbjct: 467 VAIGIDPDSNDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFPTLVKNGHVYMAMP 525

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G +  YA DEE K  +L+   +  +GK  + RFKGLGEM   QL+ET +D N 
Sbjct: 526 PLYRIDLGKEVYYALDEEEKSAVLDRLSRK-RGKPNVQRFKGLGEMNPLQLRETTLDPNT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++ I+    + ++T   ++ L+  K +++R  ++QE+   ++
Sbjct: 585 RRLVQLTIDD--ENYQETFSMMDMLLAKKRSEDRRNWLQEKGDTVE 628


>gi|94500377|ref|ZP_01306909.1| DNA topoisomerase IV, B subunit [Oceanobacter sp. RED65]
 gi|94427412|gb|EAT12390.1| DNA topoisomerase IV, B subunit [Oceanobacter sp. RED65]
          Length = 631

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 246/647 (38%), Positives = 355/647 (54%), Gaps = 26/647 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY A SI +L GL+PVR RPGMY   T+    +HL  EVIDN++DE +AG+ N I + L
Sbjct: 2   SNYTAQSIEVLSGLDPVRKRPGMY---TETTRPNHLAQEVIDNSVDEALAGHCNHITIEL 58

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V DNGRG+P + HP+    S +E+ILT LHAGGKF N  Y+ SGGLHGVG+SV
Sbjct: 59  FADQSLAVTDNGRGMPTDIHPEH-GVSGVELILTKLHAGGKFSNDNYQFSGGLHGVGVSV 117

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDK 219
           VNALS  L VT+ R   I    F  G     LEK  + +     GT + F PD K F   
Sbjct: 118 VNALSKALEVTIHRNGEIMRIAFQDGEKAIDLEKIGETKRKKDTGTTVRFLPDAKYFDSH 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F   RL  + ++KA L   +   +       +       E++++  GL  YL    + 
Sbjct: 178 -KFSVPRLKHVLRAKAVLCPGLTIEFINHGNKDDN------EKWFYEDGLIDYLTESTKG 230

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  E F G           V+WA+ W  E  E  + SY N I T +GGTH +GLR  
Sbjct: 231 YETLPQEPFEGSMSGNTE---AVDWAVQWLPEGGEQLMESYVNLIPTAQGGTHVNGLRTG 287

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + +  DD+      +LS  + +P+F+GQTK +L S +A   V
Sbjct: 288 LLEALREFCEFRNLLPRGVKLTPDDVWDKVAFVLSAKLADPQFSGQTKERLSSREAAAFV 347

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L ++     ++ E VI  ++ R+R    ++V RK   +   LPGKLADC
Sbjct: 348 SGVVKDSFSLWLNEHSSLGERIAEMVISNAQRRMR--SAKKVVRKKVTQGPALPGKLADC 405

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           + N    +ELF+VEGDSAGGSAKQAR+R NQA++PLRGKILN     S ++  +Q+I D+
Sbjct: 406 ASNDPAYSELFLVEGDSAGGSAKQARSRDNQAIMPLRGKILNSWEVASTEVLASQEIHDI 465

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             ALG    S     +LRY K+ I+ DAD DG HIA+LL   F +    L+   H+++  
Sbjct: 466 SVALGMDPGSDDL-SNLRYGKICILADADSDGLHIATLLCALFVKHFPALVRAGHVYVAM 524

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFK-KHGKGKIEISRFKGLGEMLASQLKETAMDA 635
           PPL+RI  G    YA DE  +  +L+  + +  KGKI + RFKGLGEM   QL+ET MD 
Sbjct: 525 PPLYRIDVGKDVYYALDEAERAGVLDRIQAEKKKGKINVQRFKGLGEMNPLQLRETTMDP 584

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           + R L+++ I +  ++ +        L   ++ +R  +++ + +  D
Sbjct: 585 DTRRLVQLSIEEGDDTNEMMDLL---LAKKRSADRKTWLESKGNKAD 628


>gi|88859081|ref|ZP_01133722.1| DNA topoisomerase IV, subunit B [Pseudoalteromonas tunicata D2]
 gi|88819307|gb|EAR29121.1| DNA topoisomerase IV, subunit B [Pseudoalteromonas tunicata D2]
          Length = 629

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 243/646 (37%), Positives = 352/646 (54%), Gaps = 22/646 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           ++ +Y+A SI +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AG+A+ I+V
Sbjct: 2   SNQDYNAESIEVLNGLDPVKRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHASKIDV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +  L V D+GRG+PV+ HP+      +E+ILT LHAGGKF N  Y+ SGGLHGVGI
Sbjct: 59  ILHEDNSLEVQDDGRGMPVDIHPE-EGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVGI 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS  + V+V R    +   F  G  +  L     V +   GT + F  D   F  
Sbjct: 118 SVVNALSTRVEVSVKRDGQQYQIAFENGDKVEDLSITGTVGKRNTGTSVRFWADSSYFDS 177

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              +  ++L  + ++KA L   ++  +             + +E+++  GLK YL+  ++
Sbjct: 178 PN-YSISKLTYLLKAKAVLCPGLRIRFINK-------QTKDTQEWFYEAGLKDYLKESIK 229

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
               +  E FTG+  +  T                   SY N I T +GGTH +GLR  L
Sbjct: 230 GYEALPEEPFTGEF-RGNTEGADWAICWLPEGGEGIYESYVNLIPTAQGGTHVNGLRQGL 288

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E      R + +  DD+      +LSV +++P+FAGQTK KL S      V 
Sbjct: 289 LEAMREFCEFRNLLPRGVKLTPDDIWDKCNYVLSVKMQDPQFAGQTKEKLSSRSCAAFVS 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             ++D F  +L ++  +A  L E  I  ++ R+R    ++V RK       LPGKL DCS
Sbjct: 349 GVVKDSFSLWLNEHTDKAELLAELCINNAQRRMR--AAKKVVRKKITSGPALPGKLTDCS 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
            +    +E+F VEGDSAGGSAKQAR+R  QA++PLRGKILN     S +I  +Q++ D+ 
Sbjct: 407 TSETSRSEIFFVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVESGQILASQEVHDIS 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG    SQ     LRY KV I+ DAD DG HIA+LL   F +    L+E  H+F+  P
Sbjct: 467 VALGIDPDSQDLTT-LRYGKVCILADADSDGLHIATLLCALFVKHFPTLVEAGHVFVAMP 525

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDAN 636
           PL+RI  G    YA DE+ K  ILE      K GK+ + RFKGLGEM   QL+ET MD N
Sbjct: 526 PLYRIDLGKDVYYALDEDEKNGILERITAEKKRGKVNVQRFKGLGEMNPLQLRETTMDPN 585

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            R L+++      N+++        L   +A +R +++++     +
Sbjct: 586 TRRLVQLTFEDKENTIEMMDML---LAKKRAPDRRQWLEDSGDKAE 628


>gi|289209261|ref|YP_003461327.1| DNA topoisomerase IV subunit beta [Thioalkalivibrio sp. K90mix]
 gi|288944892|gb|ADC72591.1| DNA topoisomerase IV, B subunit [Thioalkalivibrio sp. K90mix]
          Length = 628

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 252/646 (39%), Positives = 372/646 (57%), Gaps = 28/646 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y AS I +LEGL+PVR RPGMY   TD    +HL  EVIDN++DE I+G+A  I+V L 
Sbjct: 2   SYSASDIEVLEGLDPVRKRPGMY---TDTTRPNHLAQEVIDNSVDEAISGHAKRIDVILH 58

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V D+GRG+PV+ HP+  N+  +E+IL+TLHAGGKF +  Y+ SGGLHGVG+SVV
Sbjct: 59  KDDSVSVSDDGRGMPVDLHPR-ENRPGVEVILSTLHAGGKFSDKNYQFSGGLHGVGVSVV 117

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221
           NALS +L V + R    +   F+ G     LE    V +   GT + F PDP+ F     
Sbjct: 118 NALSKQLEVQIKRDGREYRMAFAGGYKTQDLEAVGDVGKRNTGTTLHFWPDPQYFDSA-K 176

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F   RL  + ++KA L   +   +  +          E  E+ +  GL+ YL   L+   
Sbjct: 177 FSVPRLKHILRAKAVLCPGLTVTFHDE-------TTGEACEWCYQAGLRDYLVEALDGLE 229

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVALT 339
            +  E F G            +WA+ W  E  E+   SY N I T +GGTH +GLR  LT
Sbjct: 230 RVPEEPFMGSVSG---ATEAADWAVTWLPEGGEVVSESYVNLIPTTQGGTHVNGLRTGLT 286

Query: 340 RGIKKYAEL-TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E  +   R I +  +D+      +LS  +++P+FAGQTK +L S  A   V  
Sbjct: 287 EAVREFCEFRSLLPRGIKLAPEDVWERVASVLSFKMQDPQFAGQTKERLSSRQAAPFVSG 346

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L Q+P +  ++ E  I+ +++R R    R+V RK   +   LPGKLADC+ 
Sbjct: 347 VVKDAFSLWLNQHPQQGERIAELAIQNAQKRSR--AGRKVVRKKVTQGPTLPGKLADCAS 404

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN      +++  +Q+I D+  
Sbjct: 405 QDLERTELFLVEGDSAGGSAKQARDRDFQAIMPLRGKILNSWEVDPDQVLGSQEIHDISV 464

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG         + LRY KV I+ DAD DGAHIA+LL   F +    L+E+ H+++  PP
Sbjct: 465 ALGVDPGQASL-DGLRYGKVCILADADSDGAHIATLLCALFLKHFRPLVERGHVYIAMPP 523

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANK 637
           L+R+  G ++ YA D++ K  +LE  +    KGK+ ++RFKGLGEM   QL+ET M+ + 
Sbjct: 524 LYRVDVGKQTFYALDDDEKAGVLERIEAEKMKGKVSVTRFKGLGEMNPLQLRETTMNPDT 583

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++ ++    +  DT   ++ L+G K A ER  +++ +    D
Sbjct: 584 RRLVQLTLD----AADDTMQLLDMLLGKKRASERRAWLEGKGHLAD 625


>gi|227112782|ref|ZP_03826438.1| DNA topoisomerase IV subunit B [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 631

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 255/648 (39%), Positives = 363/648 (56%), Gaps = 26/648 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A  +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  I+V
Sbjct: 2   AQSSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARRIDV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF    Y+ SGGLHGVGI
Sbjct: 59  ILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSGKNYQFSGGLHGVGI 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS  + VTV R   ++   F  G  +  L       R   GTR+ F PD + F D
Sbjct: 118 SVVNALSTRVEVTVKRDGQVYDIAFENGDKVQELTVTGTCGRRNTGTRVHFWPD-EKFFD 176

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
            A F  +RL  + ++KA L   V+  +       E       + + +  GL  YL   + 
Sbjct: 177 SARFSVSRLTHLLKAKAVLCPGVEIIFKDKVNNTE-------QRWCYQDGLNDYLCEAVN 229

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336
               +  + F G           V+WA+ W  E  E    SY N I T  GGTH +GLR 
Sbjct: 230 GLITLPEKPFLGSITGDTE---AVDWALLWLPEGGELLTESYVNLIPTPMGGTHVNGLRQ 286

Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            L   ++++ E      R + + +DD+      +LSV ++EP+FAGQTK +L S      
Sbjct: 287 GLLDAMREFCEFRNILPRGVKLSADDIWERCAYVLSVKMQEPQFAGQTKERLSSRQCAAF 346

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           V   ++D F  +L QN   A +L E  I  ++ R+R    ++V RK       LPGKLAD
Sbjct: 347 VSGVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C+    + TELF+VEGDSAGGSAKQAR R  QA++PL+GKILN     S+++  +Q++ D
Sbjct: 405 CTSQDLNRTELFLVEGDSAGGSAKQAREREFQAIMPLKGKILNTWEVSSDEVLASQEVHD 464

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++ 
Sbjct: 465 ISVAIGIDPDSADL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVQGGHVYVA 523

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+RI  G +  YA DEE K  +LE+ K+  KGK  + RFKGLGEM   QL+ET +D 
Sbjct: 524 MPPLYRIDLGKEVYYALDEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPLQLRETTLDP 582

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           N R L+++ IN+D   +  T   ++ L+  K +++R  ++QE+    +
Sbjct: 583 NTRRLVQLTINED--DVDQTMAMMDMLLAKKRSEDRRNWLQEKGDKAE 628


>gi|119964148|ref|YP_947523.1| DNA topoisomerase IV subunit B [Arthrobacter aurescens TC1]
 gi|119951007|gb|ABM09918.1| putative DNA gyrase subunit B [Arthrobacter aurescens TC1]
          Length = 702

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 241/700 (34%), Positives = 350/700 (50%), Gaps = 61/700 (8%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + S  Y+A  + +LEGLE VR RPGMYIG TD + L H   E+IDNA+DE +AG+ + I+
Sbjct: 2   APSSEYNARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNAVDEALAGFGHDIK 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V L  +  + + D+GRGIPV+  PK    S +E++ T LHAGGKF   +Y  SGGLHGVG
Sbjct: 62  VILHADNSVEIHDDGRGIPVDVEPK-TGLSGVEVVFTKLHAGGKFGGGSYTASGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE----------------------KK 196
            SVVNALS  L V V R +  +   F RG P   ++                        
Sbjct: 121 ASVVNALSSRLDVQVDRGSKTYQMSFRRGEPGRFIDSGAKPGPNATFEPFVENSVLDVVG 180

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
           +  R   GTR+ +  D +IF   A F    L    +  ++L   +K     ++++A   G
Sbjct: 181 KAKRGVTGTRVRYWADRQIFTPDAKFSYDDLAARARQTSFLVPGLKITVRDERKLAGTPG 240

Query: 257 IP--EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT----------------H 298
                +E F+  GG+  +++    +  +       G  + K T                 
Sbjct: 241 EAGVHEEVFHHDGGISEFVEFLAADSGVTDVWRLHGSGKFKETVPVLDENGHSKIAEVER 300

Query: 299 RGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK---RA 354
              V+ A+ W       + S+ N I T +GGTH+SG   AL +  +K  E    K     
Sbjct: 301 DCEVDIALRWGIGYETTMRSFVNIIATPKGGTHQSGFEAALLKTFRKAVETNARKLKAGN 360

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RTVENALRDPFDHYLVQ 410
             I  DD++     +L+V + EP+F GQTK  L +   +    + VE  +          
Sbjct: 361 DKIEKDDILAGLTAVLTVRLAEPQFEGQTKEILGTSAVRAIVAKVVEKEITARLGSANRN 420

Query: 411 NPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           +  ++  LLE ++   + R+  R  +E   RK A+    +P KLADC  +    +ELFIV
Sbjct: 421 DKAQSALLLEKMVAEMKSRISARVHKETQRRKNALETSSMPTKLADCRTDDVARSELFIV 480

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           EGDSA G+AK AR+   QA+LP+RGKILNV  A    + +N +   L+Q +G  +   + 
Sbjct: 481 EGDSALGTAKLARSSDFQALLPIRGKILNVQKASVGDMLSNAECAALIQVVGAGSGRSFD 540

Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI------T 583
            E  RY KVI+MTDADVDGAHI +LLLT F++ M  ++E   +F   PPL R+       
Sbjct: 541 IEAARYGKVILMTDADVDGAHIRTLLLTLFFRYMRPMVEAGRVFAAVPPLHRVEVINPGQ 600

Query: 584 QGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRTLLR 642
           +  + +Y + E     +L    K GK  K  I R+KGLGEM A QL ET MD   RTL +
Sbjct: 601 KANEMIYTYSEAELHVLLSNLAKEGKRYKEPIQRYKGLGEMDAQQLAETTMDPRHRTLRK 660

Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           V I     S +  ++  + LMG+    R +FI   A+ +D
Sbjct: 661 VGIE----SAQRAEEVFDLLMGSDVAPRKEFIIAGAATLD 696


>gi|332035446|gb|EGI71944.1| topoisomerase IV subunit B [Pseudoalteromonas haloplanktis ANT/505]
          Length = 629

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 239/641 (37%), Positives = 348/641 (54%), Gaps = 22/641 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY+A +I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AG+A  I+V L
Sbjct: 4   QNYNAEAIEVLNGLDPVKRRPGMY---TDTVRPNHLGQEVIDNSVDEAMAGHATRIDVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V D+GRG+P++ HP+      +E+I T LHAGGKF N  Y+ SGGLHGVGISV
Sbjct: 61  HEDNSLEVSDDGRGMPIDIHPE-EGIPGVELIFTKLHAGGKFSNKNYQFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + VTV R    +   F  G  +  L     V +   GT + F  D   F    
Sbjct: 120 VNALSTRVEVTVRRDAQQYRMAFENGDKVEDLSVIGTVGKRNTGTTVRFWADVSYFDSPN 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +   +L  + ++KA L   ++  +             E +E+++  GLK YL   ++  
Sbjct: 180 -YSITKLNHLLKAKAVLCPGLRIKFVNK-------QTKETKEWFYETGLKDYLIEAVKGF 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
             +  + F G+  K                      SY N I T +GGTH +GLR  L  
Sbjct: 232 ETLPQDPFVGEF-KSSIEGADWAVVWLPEGGESIAESYVNLIPTAQGGTHVNGLRQGLLE 290

Query: 341 GIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
            ++++ E      R + +  DD+      +LSV +++P+FAGQTK KL S      V   
Sbjct: 291 AMREFCEFRNLLPRGVKLTPDDIWERCSYVLSVKMQDPQFAGQTKEKLSSRSCAAFVSGV 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
           ++D F  +L ++   A  L E  I  ++ RLR    ++V RK       LPGKL DCS  
Sbjct: 351 VKDSFSLWLNEHTDTAELLAELCISNAQSRLR--AAKKVVRKRVTAGPALPGKLTDCSAA 408

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
               TELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     S +I  +Q++ D+  A
Sbjct: 409 DNDRTELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVESGQILASQEVHDISVA 468

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           LG    S      LRY K+ I+ DAD DG HIA+LL   F +   +L++  H+++  PPL
Sbjct: 469 LGIDPESTDM-SGLRYNKICILADADSDGLHIATLLCALFVRHFPELVKTGHVYVAMPPL 527

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANKR 638
           FRI  G +  YA DEE K  IL   +   K GK+ + RFKGLGEM   QL+ET MD N R
Sbjct: 528 FRIDIGKEVYYALDEEEKTAILARIEAEKKRGKVNVQRFKGLGEMNPLQLRETTMDPNTR 587

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679
            L+++ +++++ +++        L   ++ +R +++++  +
Sbjct: 588 RLVQLTLDEEVETMEMMDML---LAKKRSPDRRQWLEDHGN 625


>gi|157372496|ref|YP_001480485.1| DNA topoisomerase IV subunit B [Serratia proteamaculans 568]
 gi|157324260|gb|ABV43357.1| DNA topoisomerase IV, B subunit [Serratia proteamaculans 568]
          Length = 631

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 247/646 (38%), Positives = 361/646 (55%), Gaps = 26/646 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  I+V L
Sbjct: 4   SSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRIDVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V+D+GRG+PV+ HP+      +E+I+  LHAGGKF N  Y+ SGGLHGVGISV
Sbjct: 61  HADQSLEVIDDGRGMPVDIHPE-EGVPAVELIMCRLHAGGKFSNKNYQFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + V V R   ++S  F  G  +  L       +   GT I F PD + F D  
Sbjct: 120 VNALSTRVEVNVKRDGNVYSIAFENGDKVQDLAVTGSCGKRNTGTSIHFWPD-EKFFDSP 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L   V+  +       E       + + +  GL  YL   +   
Sbjct: 179 RFSVSRLSHLLKAKAVLCPGVEIYFIDKLNNTE-------QRWCYQDGLTDYLMEAVNGL 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +    F G           V+WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 ITLPEAAFVGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGL 288

Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V 
Sbjct: 289 LDAMREFCEFRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             ++D F  +L QN   A +L E  I  ++ RLR    ++V RK       LPGKLADC+
Sbjct: 349 GVVKDAFSLWLNQNIQAAEQLAELAISSAQRRLR--AAKKVVRKKLTSGPALPGKLADCT 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
               + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+ 
Sbjct: 407 SQDLNMTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S+     LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  P
Sbjct: 467 VAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRSLVKGGHVYVAMP 525

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G +  YA DEE K  +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N 
Sbjct: 526 PLYRIDLGKEVFYALDEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPPQLRETTLDPNT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++ ++     +  T   ++ L+  K +++R  ++Q++    +
Sbjct: 585 RRLVQLTVSD--EDVDQTLAMMDMLLAKKRSEDRRNWLQDKGDMAE 628


>gi|227326913|ref|ZP_03830937.1| DNA topoisomerase IV subunit B [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 631

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 252/648 (38%), Positives = 361/648 (55%), Gaps = 26/648 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A  +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  I+V
Sbjct: 2   AQSSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARRIDV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF    Y+ SGGLHGVGI
Sbjct: 59  ILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSGKNYQFSGGLHGVGI 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS  + VTV R   ++   F  G  +  L       R   GTR+ F PD + F D
Sbjct: 118 SVVNALSTRVEVTVKRDGQVYDIAFENGDKVQELTVTGTCGRRNTGTRVHFWPD-EKFFD 176

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F  +RL  + ++KA L   V+  +       E       + + +  GL  YL   + 
Sbjct: 177 SPRFSVSRLTHLLKAKAVLCPGVEIIFKDKVNNTE-------QRWCYQDGLNDYLCEAVN 229

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336
               +  + F G           V+WA+ W  E  E    SY N I T  GGTH +GLR 
Sbjct: 230 GLITLPEKPFLGSITGDTE---AVDWALLWLPEGGELLTESYVNLIPTPMGGTHVNGLRQ 286

Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            L   ++++ E      R + + +DD+      +LSV ++EP+FAGQTK +L S      
Sbjct: 287 GLLDAMREFCEFRNILPRGVKLSADDIWERCAYVLSVKMQEPQFAGQTKERLSSRQCAAF 346

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           V   ++D F  +L QN   A +L E  I  ++ R+R    ++V RK       LPGKLAD
Sbjct: 347 VSGVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C+    + TELF+VEGDSAGGSAKQAR R  QA++PL+GKILN     S+++  +Q++ D
Sbjct: 405 CTSQDLNRTELFLVEGDSAGGSAKQAREREFQAIMPLKGKILNTWEVSSDEVLASQEVHD 464

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++ 
Sbjct: 465 ISVAIGIDPDSADL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVQGGHVYVA 523

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+RI  G +  YA DEE K  +LE+ K+  KGK  + RFKGLGEM   QL+ET +D 
Sbjct: 524 MPPLYRIDLGKEVYYALDEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPLQLRETTLDP 582

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           N R L+++ I++    +  T   ++ L+  K +++R  ++QE+    +
Sbjct: 583 NTRRLVQLTISE--EDMDQTMAMMDMLLAKKRSEDRRNWLQEKGDKAE 628


>gi|331006356|ref|ZP_08329667.1| Topoisomerase IV subunit B [gamma proteobacterium IMCC1989]
 gi|330419838|gb|EGG94193.1| Topoisomerase IV subunit B [gamma proteobacterium IMCC1989]
          Length = 628

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 253/645 (39%), Positives = 362/645 (56%), Gaps = 26/645 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY +  I +L GL+PV+ RPGMY   T+    +HL  EVIDN++DE +AG+A  IEV+L 
Sbjct: 3   NYSSEDIEVLTGLDPVKKRPGMY---TETTRPNHLAQEVIDNSVDEALAGHAKTIEVTLH 59

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            N  +TV D+GRG+PV+ HP    K  +E+IL+TLHAGGKF +  YE SGGLHGVG+SVV
Sbjct: 60  KNQAITVSDDGRGMPVDMHP-VQKKPGVEVILSTLHAGGKFSDKNYEFSGGLHGVGVSVV 118

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221
           NALS +L V++ R   +   +FS G  +  L    +  +   GT + F P P+ F     
Sbjct: 119 NALSQKLVVSIKRDGKVHDIEFSHGDKVKDLHVTGECGKRNTGTTVYFLPAPEYFDSP-K 177

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F  +RL  + ++KA L   +K  ++ +          E EE+Y+  GL  YL        
Sbjct: 178 FSVSRLRHVLRAKAVLCPGLKIVFTNE-------QTAETEEWYYEDGLTDYLVDATRGWE 230

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALT 339
           ++    FTG           V+WA+ W  E  E    SY N I T +GGTH +GLR  L 
Sbjct: 231 VLPRAPFTGSFSGSTE---AVDWAVQWLPEGGEVIQESYVNLIPTAQGGTHVNGLRTGLL 287

Query: 340 RGIKKYAEL-TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             +++Y E  +   R + +  DD+ +S   +LS  + +P+F+GQTK +L S +A   V  
Sbjct: 288 DAMREYCEFRSLLPRGVKLAPDDIWVSCCFVLSSKLSDPQFSGQTKERLSSREAAAFVSG 347

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
             +D F  +L Q+  +  KL ++ I  +++R+R    ++V RK   +   LPGKLADCS 
Sbjct: 348 VAKDAFSLWLNQHTEDGDKLADFCIHNAQKRVR--SSKKVARKKITQGPALPGKLADCSS 405

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 ELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     S +I  +Q++ D+  
Sbjct: 406 AEPERGELFLVEGDSAGGSAKQARSREFQAIMPLRGKILNTWEVDSAEILASQEVHDISV 465

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+G         E LRY KV I+ DAD DG HIA+LL   F +    L+   H+F+  PP
Sbjct: 466 AIGVDPGVDNL-EKLRYHKVCILADADSDGLHIATLLCALFLRHFPALVNNGHVFVAMPP 524

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           LFRI  G    YA DE  KQ IL+    +  KGK+ + RFKGLGEM   QL+ET MD + 
Sbjct: 525 LFRIDVGNDVYYALDESEKQGILDRIVAEKKKGKVNVQRFKGLGEMNPMQLRETTMDPDT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           R L+++ I+ +  + +        L   +A +R  +++   +  D
Sbjct: 585 RRLVQLTIDAEDGAHQMLDML---LAKKRAADRKSWLENSGNLAD 626


>gi|327395271|dbj|BAK12693.1| topoisomerase IV subunit B ParE [Pantoea ananatis AJ13355]
          Length = 631

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 250/648 (38%), Positives = 365/648 (56%), Gaps = 26/648 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           +  +Y+A  I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  +EV
Sbjct: 2   SQSSYNAGDIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARRVEV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +  L V D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGI
Sbjct: 59  ILHADQSLEVTDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS  + V V R   I+S  F  G  +  L     V +   GT + F PD + F D
Sbjct: 118 SVVNALSKRVEVNVRRNGEIYSIAFENGEKVQDLTVTGTVAKRNTGTSVHFWPD-EHFFD 176

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F  +RL  + ++KA L   V+  +       E       + + +  GL  YL   + 
Sbjct: 177 SPRFSVSRLSHLLKAKAVLCPGVEIVFKDKLNNTE-------QRWCYEDGLTDYLCEAVN 229

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336
               +  + F G           V+WA+ W  E  E    SY N I T +GGTH +GLR 
Sbjct: 230 GLPTLPEKPFVGTFAGDIE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 286

Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      
Sbjct: 287 GLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 346

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           V   ++D F  +L QN   A +L E  I  ++ R+R    ++V RK       LPGKLAD
Sbjct: 347 VSAVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C+    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D
Sbjct: 405 CTAQDLNKTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 464

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  A+G    S+     LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++ 
Sbjct: 465 ISVAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKNGHVYVA 523

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+RI  G +  YA DE+ K+ +LE+ K+  KGK  + RFKGLGEM   QL+ET +D 
Sbjct: 524 MPPLYRIDLGKEVYYALDEDEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPLQLRETTLDP 582

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           N R L+++ ++ D   ++ T   ++ L+  K +++R  ++QE+    D
Sbjct: 583 NTRRLVQLTVSDD--DIEQTLRVMDMLLAKKRSEDRRNWLQEKGDKAD 628


>gi|197286191|ref|YP_002152063.1| DNA topoisomerase IV subunit B [Proteus mirabilis HI4320]
 gi|227357310|ref|ZP_03841667.1| DNA topoisomerase IV subunit B [Proteus mirabilis ATCC 29906]
 gi|194683678|emb|CAR44632.1| DNA topoisomerase IV subunit B [Proteus mirabilis HI4320]
 gi|227162573|gb|EEI47562.1| DNA topoisomerase IV subunit B [Proteus mirabilis ATCC 29906]
          Length = 631

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 252/646 (39%), Positives = 363/646 (56%), Gaps = 26/646 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y+A  I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  +EV L
Sbjct: 4   SSYNAKDIEVLNGLEPVRRRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHATKVEVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  + V+DNGRG+PV+ HP+    S +E+IL  LHAGGKF N  Y+ SGGLHGVGISV
Sbjct: 61  YADQSIEVIDNGRGMPVDIHPEL-KVSAIELILAHLHAGGKFSNKNYQYSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + VTV R+  I+   F  G  +  L +     +   GT + F PD   + D  
Sbjct: 120 VNALSKRIEVTVRREGKIYQIAFENGDKVEELHQIGTCAKRDTGTSVHFWPD-STYFDIP 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F +  L  + ++KA L   V   ++             +E + +  GL  YL   +   
Sbjct: 179 RFSSKSLSHVLKAKAVLCPGVNVSFTDK-------VNNTQETWCYADGLTDYLSEAVAEF 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +  E FTGK E        VEW++ W  E  +    SY N I T +GGTH +GLR  +
Sbjct: 232 VRLPEEPFTGKFEGDNE---AVEWSMLWLPEGGDLLTESYVNLIPTVQGGTHVNGLRQGV 288

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E      R I + +DD       +LSV +++P+FAGQTK +L S      V 
Sbjct: 289 LDAMREFCEFHNLLPRGIKLTADDTWERCAYVLSVKMQDPQFAGQTKERLSSRQTSAFVA 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
           +A+++ F  +L QN      L E  I  ++ R+R    ++V RK       LPGKLADC+
Sbjct: 349 SAVKNAFSLWLNQNVQVGELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADCT 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     S+++  +Q++ D+ 
Sbjct: 407 SQDLRYTELFLVEGDSAGGSAKQARDREYQAIMPLRGKILNTWEVSSDEVLASQEVHDIS 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++Q H+++  P
Sbjct: 467 VAIGMDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFPALVKQGHVYMAMP 525

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G +  YA DE  K  IL+   +  KGK  + RFKGLGEM   QL+ET +D N 
Sbjct: 526 PLYRIDLGKEVSYALDEAEKNAILQRLSRK-KGKPNVQRFKGLGEMNPLQLRETTLDPNT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++ I+    + ++T   ++ L+  K +++R  ++QE+   +D
Sbjct: 585 RRLVQLVIDD--ENYQETLGMMDMLLAKKRSEDRRNWLQEKGDEVD 628


>gi|206578624|ref|YP_002236552.1| DNA topoisomerase IV, B subunit [Klebsiella pneumoniae 342]
 gi|288933535|ref|YP_003437594.1| DNA topoisomerase IV subunit beta [Klebsiella variicola At-22]
 gi|290511406|ref|ZP_06550775.1| DNA topoisomerase IV, B subunit [Klebsiella sp. 1_1_55]
 gi|206567682|gb|ACI09458.1| DNA topoisomerase IV, B subunit [Klebsiella pneumoniae 342]
 gi|288888264|gb|ADC56582.1| DNA topoisomerase IV, B subunit [Klebsiella variicola At-22]
 gi|289776399|gb|EFD84398.1| DNA topoisomerase IV, B subunit [Klebsiella sp. 1_1_55]
          Length = 631

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 251/646 (38%), Positives = 364/646 (56%), Gaps = 26/646 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  +EV L
Sbjct: 4   SSYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVEVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGISV
Sbjct: 61  HADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + VTV R   ++S  F  G  +  L       +   GT + F PD + F D  
Sbjct: 120 VNALSKRVEVTVRRDGQVYSIAFENGEKVEDLHVTGTCGKRNTGTSVHFWPD-ESFFDSP 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L   V+  +      +E       + + +  GL  YL   +   
Sbjct: 179 RFSVSRLTHLLKAKAVLCPGVEIVFRDQVNDSE-------QRWCYADGLNDYLCEAVNGL 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
            L+  + F G    +      V+WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 PLLPEKPFVGTFSGETE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGL 288

Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V 
Sbjct: 289 LDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             ++D F  +L QN   A  L E  I  ++ RLR    ++V RK       LPGKLADC+
Sbjct: 349 GVVKDAFSLWLNQNVQAAELLAEMAISSAQRRLR--AAKKVVRKKLTSGPALPGKLADCT 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
               + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+ 
Sbjct: 407 AQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L+++ H+++  P
Sbjct: 467 VAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRTLVKEGHVYVALP 525

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G +  YA  EE K  +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N 
Sbjct: 526 PLYRIDLGKEVYYALTEEEKTGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPNT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++ I+      + T   ++ L+  K +++R  ++QE+    D
Sbjct: 585 RRLVQLVISD--EDEQQTTAMMDMLLAKKRSEDRRNWLQEKGDMAD 628


>gi|261342468|ref|ZP_05970326.1| DNA topoisomerase IV, B subunit [Enterobacter cancerogenus ATCC
           35316]
 gi|288315107|gb|EFC54045.1| DNA topoisomerase IV, B subunit [Enterobacter cancerogenus ATCC
           35316]
          Length = 630

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 245/647 (37%), Positives = 359/647 (55%), Gaps = 26/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R   +++  F  G  +  L+      +   GT + F PD   F   
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDGSFFDSP 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL  + ++KA L   V+  +  +    E       + + +  GL  YL   +  
Sbjct: 178 R-FSVSRLTHLLKAKAVLCPGVEITFKDNVNNTE-------QTWCYADGLNDYLCEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G           V+WA+ W  E  E    SY N I T  GGTH +GLR  
Sbjct: 230 LPTLPEKPFVGNFSGDTE---AVDWALLWLPEGGELLTESYVNLIPTMLGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A  L E  I  ++ RLR    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFTLWLNQNVQAAEMLAELAISSAQRRLR--AAKKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S+     LRY K+ I+ DAD DG HIA+LL   F +    L++  H+ +  
Sbjct: 465 SVAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKNGHVHVAL 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA  EE K+ +L++ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLDQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ I+      + T   ++ L+  K +++R  ++QE+    D
Sbjct: 583 TRRLVQLTISD--EDEQQTNAMMDMLLAKKRSEDRRNWLQEKGDMAD 627


>gi|188532591|ref|YP_001906388.1| DNA topoisomerase IV subunit B [Erwinia tasmaniensis Et1/99]
 gi|188027633|emb|CAO95483.1| DNA topoisomerase IV subunit B [Erwinia tasmaniensis Et1/99]
          Length = 631

 Score =  549 bits (1413), Expect = e-154,   Method: Composition-based stats.
 Identities = 251/646 (38%), Positives = 360/646 (55%), Gaps = 26/646 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y+A SI +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  +EV L
Sbjct: 4   SSYNADSIEVLSGLEPVRRRPGMY---TDTARPNHLGQEVIDNSVDEALAGHAKRVEVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V+D+GRG+PV+ HP+      +E+I   LHAGGKF N  Y+ SGGLHGVGISV
Sbjct: 61  HPDQSLEVIDDGRGMPVDIHPE-EGVPAVELIFCRLHAGGKFSNKNYQFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + VTV R   ++   F  G  +  L     V +   GTR+ F PD + F D  
Sbjct: 120 VNALSKRVEVTVRRNAEVYEMAFENGDKVQELTVTGTVAKRNTGTRVQFWPD-ESFFDSP 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L   V+  +       E       + + +  GL  YL   +   
Sbjct: 179 RFSVSRLSHLLKAKAVLCPGVEIVFKDKLNKTE-------QSWCYADGLTDYLMEAVNGL 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
            L+  + F G           V+WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 PLLPEKPFVGTFSGDVE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGL 288

Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V 
Sbjct: 289 LDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             ++D F  +L QN   A  L E  I  ++ R+R    ++V RK       LPGKLADC+
Sbjct: 349 GVVKDAFSLWLNQNVQAAEMLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADCT 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+ 
Sbjct: 407 AQDLSRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S+     LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  P
Sbjct: 467 VAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRTLVKNGHVYVAMP 525

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G +  YA DE  K  ILE+ K+  KGK  + RFKGLGEM   QL+ET +D N 
Sbjct: 526 PLYRIDLGKEVYYALDEAEKAGILEQLKRK-KGKPGVQRFKGLGEMNPLQLRETTLDPNT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++ I      +  T   ++ L+  K +++R  ++QE+    +
Sbjct: 585 RRLVQLTIGD--EDVDQTLAVMDMLLAKKRSEDRRNWLQEKGDSAE 628


>gi|115499623|dbj|BAF33486.1| topoisomerase IV subunit B [Listonella anguillarum]
          Length = 627

 Score =  549 bits (1413), Expect = e-154,   Method: Composition-based stats.
 Identities = 247/645 (38%), Positives = 353/645 (54%), Gaps = 24/645 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE + GYA+ ++V 
Sbjct: 2   TEQYNAGAIEVLNGLEPVRRRPGMY---TDTARPNHLGQEVIDNSVDEALRGYASKVQVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+    S +E+I   LHAGGKF N +Y+ SGGLHGVGIS
Sbjct: 59  LHEDQSLEVIDDGRGMPVDIHPE-EKISGVELIFCKLHAGGKFSNKSYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + VTV R   I+   F  G  +  L       R  +GT + F PD   F   
Sbjct: 118 VVNALSKRVEVTVRRDGQIYEMAFEHGNKVEELTVTGTCGRRNKGTSVHFWPDTSYFDSP 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F   RL+   ++KA L   ++  +S      E         +Y+  GLK YL   ++ 
Sbjct: 178 N-FSVTRLINNLRAKAVLCPGLEITFSDKVNNLE-------HRWYYEDGLKDYLAEGVKG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
            +L+  E FTG+   +                     SY N I T +GGTH + LR  L 
Sbjct: 230 YTLLPEEPFTGEFVAETEA-ANWAVIWLPEGGEMITESYVNLIPTAQGGTHVNRLRQGLL 288

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R + +  +D+      +LSV +++P+FAGQTK +L S      V  
Sbjct: 289 DAMREFCEFRNLLPRGVKLTGEDVFDRCSYVLSVKMQDPQFAGQTKERLSSRQTAAFVSG 348

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L + P  A  L E  I  +  R+R    ++V RK       LPGKL DCS 
Sbjct: 349 VIKDSFSLWLNEKPQLAELLAEVCIANAHRRMR--ASKKVVRKKIASGPALPGKLTDCSV 406

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TE+F VEGDSAGGSAKQAR+R  QAV+PLRGKILN     ++++  +Q++ D+  
Sbjct: 407 QDLSRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG    +    + LRY K+ I+ DAD DG HIA+LL   F +    L++  H+F+  PP
Sbjct: 467 ALGIDPDNDDL-DGLRYGKICILADADSDGLHIATLLCALFTKHFRALVKAGHIFVAMPP 525

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+RI  G +  YA D+  K+ ILE   +  K KI + RFKGLGEM   QL+ET MD N R
Sbjct: 526 LYRIDCGKEVFYALDDAEKEGILERLSQK-KAKINVQRFKGLGEMNPLQLRETTMDPNTR 584

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            L+++ I+      + T + ++ L+G K AD+R  ++Q      +
Sbjct: 585 RLVQLTIDD----AEATDEMMDMLLGKKRADDRRAWLQRYGDMAE 625


>gi|304396845|ref|ZP_07378725.1| DNA topoisomerase IV, B subunit [Pantoea sp. aB]
 gi|304355641|gb|EFM20008.1| DNA topoisomerase IV, B subunit [Pantoea sp. aB]
          Length = 631

 Score =  549 bits (1413), Expect = e-154,   Method: Composition-based stats.
 Identities = 251/648 (38%), Positives = 365/648 (56%), Gaps = 26/648 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           +  NY+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE + G+A  +EV
Sbjct: 2   SQSNYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALGGHAKRVEV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGI
Sbjct: 59  ILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS  + VTV R   I+   F  G  +  L     V +   GTR+ F PD + F D
Sbjct: 118 SVVNALSKRVEVTVRRNGEIYDMAFENGDKVQDLTVTGTVAKRNTGTRVHFWPD-ESFFD 176

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F  +RL  + ++KA L   V+  +       E       + + +  GL  YL   + 
Sbjct: 177 SPRFSVSRLSHLLKAKAVLCPGVEIVFKDKLNNTE-------QTWCYEDGLTDYLCEAVN 229

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336
               +  + F G           V+WA+ W  E  E    SY N I T +GGTH +GLR 
Sbjct: 230 GLPTLPEKPFVGSFAGDVE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 286

Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      
Sbjct: 287 GLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 346

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           V   ++D F  +L QN   A +L E  I  ++ R+R    ++V RK       LPGKLAD
Sbjct: 347 VSGVVKDAFSLWLNQNIQTAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C+    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D
Sbjct: 405 CTAQDLNKTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 464

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  A+G    S+     LRY K+ I+ DAD DG HIA+LL   F +    L+   H+++ 
Sbjct: 465 ISVAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRSLVSNGHVYVA 523

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+RI  G +  YA DE+ K+ +LE+ K+  KGK  + RFKGLGEM   QL+ET +D 
Sbjct: 524 MPPLYRIDLGKEVYYALDEDEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPLQLRETTLDP 582

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           N R L+++ I++    +  T   ++ L+  K +++R  ++QE+    D
Sbjct: 583 NTRRLVQLTISE--EDVDQTIRMMDMLLAKKRSEDRRNWLQEKGDTAD 628


>gi|261493164|ref|ZP_05989695.1| DNA topoisomerase 4 subunit B [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261311167|gb|EEY12339.1| DNA topoisomerase 4 subunit B [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 635

 Score =  549 bits (1413), Expect = e-154,   Method: Composition-based stats.
 Identities = 255/650 (39%), Positives = 368/650 (56%), Gaps = 26/650 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           +   Y A  I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE ++G+A+ I+V
Sbjct: 2   SEKRYGADEITVLKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALSGFADKIDV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +  L VVDNGRG+PV+ H      S +E+ILT LHAGGKF N  Y  SGGLHGVGI
Sbjct: 59  ILHADNSLEVVDNGRGMPVDIHS-TEKISGVELILTKLHAGGKFSNKNYTFSGGLHGVGI 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS+ + + + R   ++S  F+ G+ +  L       + + GT + F P+PK F  
Sbjct: 118 SVVNALSERVEIQIKRGGEVYSIAFANGVKVEDLTVIGTCPKKQTGTTVRFYPNPKYFDS 177

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F  +RL  + ++KA L  ++   +       E       E +Y+  GL  YL   L 
Sbjct: 178 PR-FSVSRLRHLLRAKAVLCPKLTINFIDKINNTE-------ESWYYEDGLSDYLSEALN 229

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336
               + +  F G    +      V WA+ W  E  E    SY N I T +GGTH +GLR 
Sbjct: 230 GYETVPNPPFIGDVTAETE---AVSWALTWLPEGGELVAESYVNLIPTAQGGTHVNGLRN 286

Query: 337 ALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            L +   ++ E+     + + + +DD+      +LS+ I+EP+FAGQTK +L S  A   
Sbjct: 287 GLLKATVEFCEIHNLLPKGVKLTADDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSY 346

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           V++ L+D F  +L QN      + E  I  ++ R+R    ++V RK  +    LPGKLAD
Sbjct: 347 VDSTLKDAFSLWLNQNVQTGKLIAEMAISSAQSRMR--AAKKVVRKKLVSGPALPGKLAD 404

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C+      TELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN     S+++  +Q++ D
Sbjct: 405 CTAQDLSRTELFLVEGDSAGGSAKQARDKEYQAILPLRGKILNTWEVSSDQVLASQEVHD 464

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  ALG    S    E+LRY KV I+ DAD DG HIA+LL   F +    L++  H+++ 
Sbjct: 465 IAVALGIDPDSDNL-EELRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQNGHVYVA 523

Query: 576 SPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
            PPL+RI  G  +  YA DE  K+ IL    K  KGK  + RFKGLGEM  SQL+ET MD
Sbjct: 524 MPPLYRIDIGKDEVHYALDEAEKEAILARLAKK-KGKPNVQRFKGLGEMNPSQLRETTMD 582

Query: 635 ANKRTLLRVEINKDLNSLK-DTQDSINKLMGTK-ADERFKFIQERASFID 682
            + R L+++  +      + +T + ++ L+G K A++R +++Q R    D
Sbjct: 583 PSTRRLVQLTFDDTAEEGELNTFEIMDMLLGKKRAEDRKQWLQNRGDEAD 632


>gi|238793656|ref|ZP_04637279.1| DNA topoisomerase 4 subunit B [Yersinia intermedia ATCC 29909]
 gi|238727071|gb|EEQ18602.1| DNA topoisomerase 4 subunit B [Yersinia intermedia ATCC 29909]
          Length = 631

 Score =  549 bits (1413), Expect = e-154,   Method: Composition-based stats.
 Identities = 248/648 (38%), Positives = 358/648 (55%), Gaps = 26/648 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
              +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  I+V
Sbjct: 2   TESSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARRIDV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +  L V D+GRG+PV+ HP+      +E+I+  LHAGGKF N  Y+ SGGLHGVGI
Sbjct: 59  ILHADQSLEVTDDGRGMPVDIHPE-EGVPAVELIMCRLHAGGKFSNKNYQFSGGLHGVGI 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS  + VTV R + I+S  F  G  +  L+      +   GT + F PD   F  
Sbjct: 118 SVVNALSKRVEVTVRRDSQIYSIAFENGDKVQELQVIGTCGKRNTGTSVHFWPDVSFFDS 177

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F  +RL  + ++KA L   V+  +       E       + + +  GL  YL   + 
Sbjct: 178 PR-FSVSRLSHLLKAKAVLCPGVEIVFKDQVNNTE-------QRWCYADGLTDYLMEAVN 229

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336
               +    F G           ++WA+ W  E  E    SY N I T +GGTH +GLR 
Sbjct: 230 GLITLPEVPFVGSFAGDTE---AIDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 286

Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            L   ++ + E      R + + +DD+      +LSV +++P+FAGQTK +L S      
Sbjct: 287 GLLDAMRDFCEYRNILPRGVKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 346

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           V   ++D F  +L QN   A +L E  I  ++ R+R    ++V RK       LPGKLAD
Sbjct: 347 VSGVVKDAFSLWLNQNIQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C+      TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D
Sbjct: 405 CTSQDLSMTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 464

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  A+G    S+     LRY K+ I+ DAD DG HIA+LL   F +    L+   H+++ 
Sbjct: 465 ISVAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVRNGHVYVA 523

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+RI  G +  YA DEE K  +LE+ K+  +GK  + RFKGLGEM   QL+ET +D 
Sbjct: 524 MPPLYRIDLGKEVFYALDEEEKAGVLEQLKRK-RGKPNVQRFKGLGEMNPLQLRETTLDP 582

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           N R L+++ I  D   +  T   ++ L+  K +++R  ++QE+    +
Sbjct: 583 NTRRLVQLTIGDD--DIDKTLAMMDMLLAKKRSEDRRNWLQEKGDTAE 628


>gi|24375387|ref|NP_719430.1| DNA topoisomerase IV subunit B [Shewanella oneidensis MR-1]
 gi|24350217|gb|AAN56874.1|AE015822_6 DNA topoisomerase IV, B subunit [Shewanella oneidensis MR-1]
          Length = 628

 Score =  549 bits (1413), Expect = e-154,   Method: Composition-based stats.
 Identities = 246/645 (38%), Positives = 357/645 (55%), Gaps = 24/645 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y + +I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AG+A  IEV 
Sbjct: 2   TNQYTSDAIEVLNGLDPVKRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHATKIEVV 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V D+GRG+PV+ HP+      +E+ILT LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHTDNSLEVTDDGRGMPVDIHPE-EGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + VTV R   ++   F  G  +  L+      R   GTR+ F PD   F   
Sbjct: 118 VVNALSRRVEVTVRRDGQVYDIAFENGFKVEELKVTGTCGRRNTGTRVHFWPDTSYFDSP 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  ++L+ + ++KA L   ++  ++            E  E+Y+  GL  YL+  + +
Sbjct: 178 N-FSNSKLIYLLRAKAVLCPGLRIKFTNK-------HTNEVHEWYYESGLTDYLKAAVGD 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
             ++  E F G   K                      SY N I T  GGTH +G R  L 
Sbjct: 230 NIMLPEEPFIGSF-KGQIEAADWAITWLPEGGESINESYVNLIPTPLGGTHVNGFRQGLL 288

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R I +  +D+   A  ILSV +++P+FAGQTK KL S  +   V  
Sbjct: 289 ESMREFCEFRNLIPRGIKLSPEDIWDRAAFILSVKMQDPQFAGQTKEKLSSRQSSAFVSG 348

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            +RD F  +L  N   A  L E  I  +++RL+  K  +V RK       LPGKL DCS 
Sbjct: 349 IVRDAFSLWLNSNTELAESLAEMCINNAQKRLKAAK--KVARKKVTSGPALPGKLTDCSG 406

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 ELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     + ++  +Q++ D+  
Sbjct: 407 QDPMRGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASQEVHDISV 466

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+GC   S     +LRY K+ I+ DAD DG HIA+LL   F +    L+EQ H+++  PP
Sbjct: 467 AIGCDPDSNDI-SELRYGKICILADADSDGLHIATLLCALFLKHYRVLVEQGHVYIAMPP 525

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFK-KHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           LFRI  G    YA D+  K+ +L+    ++ KGK++++RFKGLGEM   QL+ET MD N 
Sbjct: 526 LFRIDIGKDVYYALDDAEKEGVLDRINAENKKGKVQVTRFKGLGEMNPLQLRETTMDPNT 585

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFI 681
           R L+++ I+      ++T   ++ L+  K + +R  +++++    
Sbjct: 586 RRLVQLTIDD----AEETDSLMDMLLAKKRSPDRKNWLEDKGDMA 626


>gi|238789175|ref|ZP_04632963.1| DNA topoisomerase 4 subunit B [Yersinia frederiksenii ATCC 33641]
 gi|238722707|gb|EEQ14359.1| DNA topoisomerase 4 subunit B [Yersinia frederiksenii ATCC 33641]
          Length = 631

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 248/648 (38%), Positives = 360/648 (55%), Gaps = 26/648 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
              +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  I+V
Sbjct: 2   TESSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARRIDV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +  L V+D+GRG+PV+ HP+      +E+I+  LHAGGKF N  Y+ SGGLHGVGI
Sbjct: 59  ILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELIMCRLHAGGKFSNKNYQFSGGLHGVGI 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS  + VTV R + I+S  F  G  +  L+      +   GT + F PD   F  
Sbjct: 118 SVVNALSKRVEVTVRRDSQIYSIAFENGDKVQDLQVIGTCGKRNTGTSVHFWPDVSFFDS 177

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F  +RL  + ++KA L   V+  +       E       + + +  GL  YL   + 
Sbjct: 178 PR-FSVSRLSHLLKAKAVLCPGVEIVFKDQVNNTE-------QRWCYADGLTDYLMEAVN 229

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336
               +    F G           ++WA+ W  E  E    SY N I T +GGTH +GLR 
Sbjct: 230 GLITLPEVPFVGSFAGDTE---AIDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 286

Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            L   ++++ E      R + + +DD+      +LSV +++P+FAGQTK +L S      
Sbjct: 287 GLLDAMREFCEYRNILPRGVKLSADDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 346

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           V   ++D F  +L QN   A +L E  I  ++ R+R    ++V RK       LPGKLAD
Sbjct: 347 VSGVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C+      TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D
Sbjct: 405 CTSQDLSMTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 464

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  A+G    S+     LRY K+ I+ DAD DG HIA+LL   F +    L+   H+++ 
Sbjct: 465 ISVAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVRNGHVYVA 523

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+RI  G +  YA DEE K  +LE+ K+  +GK  + RFKGLGEM   QL+ET +D 
Sbjct: 524 MPPLYRIDLGKEVFYALDEEEKAGVLEQLKRK-RGKPNVQRFKGLGEMNPLQLRETTLDP 582

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           N R L+++ I  D   +  T   ++ L+  K +++R  ++QE+    +
Sbjct: 583 NTRRLVQLTIGDD--DIDKTMAMMDMLLAKKRSEDRRNWLQEKGDTAE 628


>gi|240047651|ref|YP_002961039.1| Topoisomerase IV subunit B [Mycoplasma conjunctivae HRC/581]
 gi|239985223|emb|CAT05236.1| Topoisomerase IV subunit B [Mycoplasma conjunctivae]
          Length = 645

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 241/646 (37%), Positives = 357/646 (55%), Gaps = 30/646 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y A  +++L+GLE VR RPGMYIG TD   LHHL  E+ DNA+DE IAG+A  I++ L 
Sbjct: 2   EYSAEKLKVLKGLEAVRKRPGMYIGSTDIGGLHHLIWEIFDNAVDEAIAGFATEIKLILK 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  + + DNGRGIPV+ H     K+ +E++ + LHAGGKF N  Y+ + GLHGVG SVV
Sbjct: 62  KDNSIEISDNGRGIPVDKHK--SGKTGVELVFSELHAGGKFSNDVYKTAAGLHGVGSSVV 119

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS +L V V R    +   F  G  L    +K +    RGT + F PD  IF  +  F
Sbjct: 120 NALSSKLEVWVYRDGYSYFTSFKNGGHLDVSTQKVEKSKNRGTTVRFWPDFSIF-SQTSF 178

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
            +  + +  +  ++L   +K  +  +          E E F+F  GL ++++     +SL
Sbjct: 179 SSDIISERLRETSFLVSNLKISFYNEISN-------ENEIFFFQKGLISFVEFINVGKSL 231

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRG 341
           +  ++   + E +G     +E A+ +     + I S+ N + TD+GGTHE+G R AL R 
Sbjct: 232 VHKDVVFLEGESQGIQ---LEVALQYVSSYQDTIISFVNNVKTDQGGTHENGFRGALLRA 288

Query: 342 IKKYAELT-QNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVEN 398
           I  Y +     K   ++   D+      ILS+ + EP  EF GQTK KL +L A+   E 
Sbjct: 289 ITTYGQQKSLLKAKTNLEFSDVKQGLSAILSLRVPEPILEFVGQTKNKLSTLIAKSVTEE 348

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR---EVNRKTAIRKLRLPGKLAD 455
            + +    Y VQN  +A K++  V    +ER+  +  +   + ++  +  K  L GKL  
Sbjct: 349 IIYNSLMTYFVQNKEDAAKIITHVNNSYQERISAKLAKIENKTSKNISKEKRILSGKLTP 408

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
                A   E+F+VEG+SAGGSAK  RNR NQA+LPL+GKI+N        +  N++I+ 
Sbjct: 409 AQSKNAKEREIFLVEGESAGGSAKLGRNRFNQAILPLKGKIVNAEKTKLIDLLKNEEIIA 468

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +V ALG      +  ++L Y+K+IIMTDAD DGAHI  L+LTF ++ M  LIE  H+++ 
Sbjct: 469 IVSALGTGLGVNFNLKNLNYDKIIIMTDADTDGAHIQILILTFIFRYMKPLIENGHVYIA 528

Query: 576 SPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
            PPL++++ +     YA DE+   K+L +     K   +I R+KGLGEM A+QL ET MD
Sbjct: 529 QPPLYKLSYKNKDVRYAWDEKELAKLLAK-----KPNAQIQRYKGLGEMNAAQLWETTMD 583

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
              R+L++V IN     +   +  I  LMG K D R  +I++   F
Sbjct: 584 PKTRSLVKVSIND----IAIVERRIFTLMGDKTDIRKTWIEKNVDF 625


>gi|228982416|ref|ZP_04142675.1| DNA topoisomerase [Bacillus thuringiensis Bt407]
 gi|228776599|gb|EEM24907.1| DNA topoisomerase [Bacillus thuringiensis Bt407]
          Length = 644

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 231/663 (34%), Positives = 354/663 (53%), Gaps = 39/663 (5%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S+ Y+  SI ILEGLE VR RPGMYIG T+ K LHH+  E+ DN++DE +AGY + I   
Sbjct: 2   SEEYNGDSIEILEGLEAVRKRPGMYIGSTNTKGLHHMIKEITDNSVDEAVAGYCDEIITR 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  +++ DNGRG+PV+ H K    ST  +I T LHAGGKF  + Y++SGGLHGVG S
Sbjct: 62  IHKDNSISIEDNGRGVPVDVHRKA-GYSTARVIYTILHAGGKFGGNGYKVSGGLHGVGAS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEK-----VRNKRGTRITFRPDPK 214
           VVNALS  L V + R   I+  ++   G+P+ PL +  +       ++RGT++ F PD  
Sbjct: 121 VVNALSSYLEVEIHRNGKIYKDRYENGGVPVIPLTENGELPSIGDTDRRGTKVRFLPDNT 180

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           I      ++   + K  Q  A+L+  +K  +  ++   EK        F    G+   ++
Sbjct: 181 ILET-TEWNIETIEKRLQESAFLNKGLKFVFIDERTGYEKT-------FCEKDGIGGLVK 232

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333
               ++  ++  I      K       V+ A  + +E  E    YCN I+T  GGTH  G
Sbjct: 233 EINHSKPTLTDVISFSGVSKD----IEVQIAFQYVQEYNEHLISYCNNIITPHGGTHIVG 288

Query: 334 LRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           L+  +TR I  YA+     +          +    V ++S+    P++ GQTK KL S D
Sbjct: 289 LKSGITRLINGYAKELGLLKTKDNTIDGAHIRTGIVAVVSIRHSNPQYEGQTKEKLGSTD 348

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           A+  VE  +++    +   +  E  +++E  +  S+ R    K R+ + +    +L+  G
Sbjct: 349 AKGAVEEVIKNEGSKFFDLHVEEVKRIIENAMRVSKIRETEEKSRDNSLQKKDAQLQTNG 408

Query: 452 KLA-DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           KLA   S+      E+++VEGDSAGG+AKQAR+R  QA+LP +GKI+NV  A  +K+ +N
Sbjct: 409 KLASASSKTPVKKKEIYLVEGDSAGGTAKQARDRKTQAILPAKGKIINVEKARIDKVLSN 468

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  ++ A+G      +    + Y +V+IMTDADVDGAHI +LLLTFFY+ M  LIE+ 
Sbjct: 469 EEIQSIIVAIGGGHGKAFDISKVNYGRVVIMTDADVDGAHIRTLLLTFFYRYMRPLIEEG 528

Query: 571 HLFLISPPLFRI----TQGTKSV----YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
           ++++  PPL++I     +G K V    YA+ +E    +        K    I R+KGLGE
Sbjct: 529 YVWIAVPPLYQIVHEEQKGRKKVETSMYAYSDEELVSVKNLLGNKIKR---IQRYKGLGE 585

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           M A+QL +T ++   R  ++V I       K+       LMG K   R +FI   A    
Sbjct: 586 MSATQLWDTTLNPETRKQIQVRIED----AKEADAVTELLMGDKVAPRREFIISEAHKA- 640

Query: 683 DVG 685
           ++ 
Sbjct: 641 NID 643


>gi|315127627|ref|YP_004069630.1| DNA topoisomerase IV subunit B [Pseudoalteromonas sp. SM9913]
 gi|315016141|gb|ADT69479.1| DNA topoisomerase IV subunit B [Pseudoalteromonas sp. SM9913]
          Length = 629

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 241/641 (37%), Positives = 346/641 (53%), Gaps = 22/641 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY+A +I +L GLEPV+ RPGMY   TD    +HL  EVIDN++DE +AG+A  I+V L
Sbjct: 4   QNYNAEAIEVLNGLEPVKRRPGMY---TDTSRPNHLGQEVIDNSVDEAMAGHATRIDVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V D+GRG+P++ HP+      +E+I T LHAGGKF N  Y+ SGGLHGVGISV
Sbjct: 61  HEDNSLEVSDDGRGMPIDIHPE-EGIPGVELIFTKLHAGGKFSNKNYQFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + VTV R    F   F  G  +  L     V +   GT + F PD   F    
Sbjct: 120 VNALSTRVEVTVRRDAQQFRMAFEHGDKVEDLNVIGSVGKRNTGTTVRFWPDTSYFDSAN 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F   +L  + ++KA L   ++  +             E +E+++  GLK YL   ++  
Sbjct: 180 -FSLTKLNHLLKAKAVLCPGLRIKFVNK-------QTKETQEWFYETGLKDYLVEAVKGY 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
            ++  + F G+                         SY N I T +GGTH +GLR  L  
Sbjct: 232 EILPKDPFVGEFSS-SIEGADWAVVWMPEGGESTAESYVNLIPTAQGGTHVNGLRQGLLE 290

Query: 341 GIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
            ++++ E      R + +  DD+      +LSV +++P+FAGQTK KL S      V   
Sbjct: 291 AMREFCEFRNLLPRGVKLTPDDIWERCSYVLSVKMQDPQFAGQTKEKLSSRSCAAFVSGV 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
           ++D F  +L ++   A  L E  I  ++ RLR    ++V RK       LPGKL DCS  
Sbjct: 351 VKDAFSLWLNEHTDTAELLSELCISNAQRRLR--AAKKVVRKRVTSGPALPGKLTDCSAA 408

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
               TELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     S +I  +Q++ D+  A
Sbjct: 409 DNDRTELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVESGQILASQEVHDISVA 468

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           LG    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  PPL
Sbjct: 469 LGIDPDSSDL-SGLRYNKICILADADSDGLHIATLLCALFVRHFPQLVKTGHVYVAMPPL 527

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANKR 638
           FRI  G    YA DE+ K  IL   +   K GK+ + RFKGLGEM   QL+ET MD N R
Sbjct: 528 FRIDIGKDVYYALDEDEKTGILARIEAEKKRGKVNVQRFKGLGEMNPLQLRETTMDPNTR 587

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679
            L+++ ++++  +++        L   ++ +R +++++  +
Sbjct: 588 RLVQLTLDEEEQTMEMMDML---LAKKRSSDRRQWLEDHGN 625


>gi|325106678|ref|YP_004267746.1| DNA topoisomerase IV subunit B [Planctomyces brasiliensis DSM 5305]
 gi|324966946|gb|ADY57724.1| DNA topoisomerase IV subunit B [Planctomyces brasiliensis DSM 5305]
          Length = 639

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 265/653 (40%), Positives = 375/653 (57%), Gaps = 20/653 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
             ++   Y AS I +LEGLE VR RP MYIGG D + LHHL  EV+DN++DE +AG+A+ 
Sbjct: 2   ATASPTKYSASDIEVLEGLEAVRRRPSMYIGGVDVRGLHHLLWEVVDNSVDEFLAGHADT 61

Query: 97  IEVSLDGNGF-LTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
           I+++L  +G  LTV DNGRGIPV+ HPKF  KS LE+ILTTLHAGGKF +  Y  SGGLH
Sbjct: 62  IKITLHKDGSSLTVADNGRGIPVDKHPKF-KKSALEVILTTLHAGGKFSDKNYARSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS+E+  TV R    + Q++ RG   +P++K +  +   GT I FRPD +I
Sbjct: 121 GVGSSVVNALSEEMVATVHRDGHEWMQRYKRGKATTPVKKVKPFKGH-GTVIFFRPDEEI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     F +  + +  +   Y+   +K  ++ +          E  E + P G+K Y++ 
Sbjct: 180 FRKTT-FSSDTIRQHLEDICYIHAGLKIRYTDE-------VKNETFELHQPDGIKAYVEK 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLR 335
              +             EK      T          +  I SY N I T  GGTH +G+R
Sbjct: 232 LTRDEKKKPVHETIFTAEKDDGDIKTEFVLRWTEATDEHIRSYVNGIRTHAGGTHLNGIR 291

Query: 336 VALTRGIKKYAELTQNK-RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
             + + +K Y ++   K + ++I +DD+    +G++SVF+ +P F GQTK KL + +   
Sbjct: 292 SGIAKAVKNYMDVHDIKPKGVTISADDIREGCLGVVSVFLGDPMFQGQTKEKLNNPEVTA 351

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ--REVNRKTAIRKLRLPGK 452
            VE  +R   + +L  N   A  +L  +I  +  R   R        +    ++  LPGK
Sbjct: 352 AVEGLIRPGLETWLNNNSSIADAILGRIILAARARQASRDAVASIKRKTPGGKRTNLPGK 411

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L DC  N    TELFIVEGDSAGG+A   R+   QA+LPLRGK+LN  S    K   NQ+
Sbjct: 412 LLDCRSNNPDETELFIVEGDSAGGTAASGRDSRIQAILPLRGKVLNTESIKINKAMANQE 471

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           + DLV+ LG      +    LRY ++I++ DAD DG HI++LLLTFF++ M DLI  + L
Sbjct: 472 LSDLVETLGTGIGPSFDAHKLRYGRIILLMDADADGYHISTLLLTFFFRHMPDLIRSEKL 531

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           F+  PPL+RIT G +S YA D+ HK++IL     +   K+EISRFKGLGEM ASQL+ET 
Sbjct: 532 FIGQPPLYRITYGNQSQYALDDLHKEEILASIPAN--RKVEISRFKGLGEMNASQLRETT 589

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +D  +R LL+VEI   +    D   + ++L+G  A ER++ I   ++  DD+ 
Sbjct: 590 LDPTQRVLLKVEIENQV----DADQTFHQLLGKDARERYRIIMSESALADDLD 638


>gi|259907122|ref|YP_002647478.1| DNA topoisomerase IV subunit B [Erwinia pyrifoliae Ep1/96]
 gi|224962744|emb|CAX54199.1| DNA topoisomerase 4 subunit (topoisomerase IV subunit B) [Erwinia
           pyrifoliae Ep1/96]
 gi|283476925|emb|CAY72799.1| DNA topoisomerase IV, B subunit [Erwinia pyrifoliae DSM 12163]
 gi|310766325|gb|ADP11275.1| DNA topoisomerase IV subunit B [Erwinia sp. Ejp617]
          Length = 631

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 253/646 (39%), Positives = 361/646 (55%), Gaps = 26/646 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y+A SI +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  +EV L
Sbjct: 4   SSYNADSIEVLSGLEPVRRRPGMY---TDTARPNHLGQEVIDNSVDEALAGHAKRVEVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V+D+GRG+PV+ HP+      +E+I   LHAGGKF N  Y+ SGGLHGVGISV
Sbjct: 61  HPDQSLEVIDDGRGMPVDIHPE-EGVPAVELIFCRLHAGGKFSNKNYQFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + VTV R   ++   F  G  +  L     V +   GTR+ F PD + F D  
Sbjct: 120 VNALSKRVEVTVRRNGEVYEMAFENGDKVQDLTVTGTVGKRNTGTRVQFWPD-ESFFDSP 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F   RL  + ++KA L   V+  +       E       + + +  GL  YL   +   
Sbjct: 179 RFSVTRLSHLLKAKAVLCPGVEIVFKDRLNKTE-------QSWCYADGLTDYLMEAVNGL 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
            L+  + F G           V+WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 PLLPEKPFVGAFSGDVE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGL 288

Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V 
Sbjct: 289 LDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             ++D F  +L QN   A  L E  I  ++ R+R    ++V RK       LPGKLADCS
Sbjct: 349 GVVKDAFSLWLNQNVQAAEMLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADCS 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+ 
Sbjct: 407 AQDLSRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S+     LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  P
Sbjct: 467 VAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRTLVKNGHVYVAMP 525

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G +  YA DEE K  ILE+ K+  KGK  + RFKGLGEM   QL+ET +D N 
Sbjct: 526 PLYRIDLGKEVYYALDEEEKAGILEQLKRK-KGKPGVQRFKGLGEMNPLQLRETTLDPNT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++ I+     +  T   ++ L+  K +++R  ++QE+    +
Sbjct: 585 RRLVQLTISD--EDVDQTLAVMDMLLAKKRSEDRRNWLQEKGDSAE 628


>gi|254491811|ref|ZP_05104990.1| DNA topoisomerase IV, B subunit [Methylophaga thiooxidans DMS010]
 gi|224463289|gb|EEF79559.1| DNA topoisomerase IV, B subunit [Methylophaga thiooxydans DMS010]
          Length = 633

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 234/645 (36%), Positives = 347/645 (53%), Gaps = 20/645 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ YDAS+I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE IAG+A  ++V 
Sbjct: 2   TNTYDASAIEVLTGLEPVRKRPGMY---TDTTRPNHLAQEVIDNSVDEAIAGHARQLQVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V D+GRG+PV+ HP+      +E+ILT LHAGGKF N  Y  SGGLHGVG+S
Sbjct: 59  LHPDNSLEVSDDGRGMPVDMHPE-EGVPGVEVILTRLHAGGKFSNKNYRFSGGLHGVGVS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  L V + R  T +   F +G     L +   V +   GT + F P+   F   
Sbjct: 118 VVNALSSRLDVKIRRNATEYQIAFEQGALKESLTEIGTVGKRNTGTTVRFWPEASFFDSP 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL  + ++KA L   +   ++             ++ + +  GLK+YL   + +
Sbjct: 178 -KFLVSRLRHVLRAKAVLCPGLIVTFTDL-----SGKEKVEDRWCYEDGLKSYLAVAMTD 231

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
              + +  F G      +                   SY N I T +GGTH +GLR  + 
Sbjct: 232 EPCVPATPFVGHV-GDDSEEADWALMWQLEPGEVLAESYVNLIPTAQGGTHVNGLRSGVL 290

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R + +  +D+      +LSV + +P+F+GQTK +L S      V  
Sbjct: 291 EALREFCEFRNLLPRGVKLAPEDVWERCCYVLSVKLEDPQFSGQTKERLSSRQCAGFVSG 350

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L  +  +  K+ +  I  ++ RL+  + ++V RK       LPGKLADC+ 
Sbjct: 351 VVKDSFSLWLNHHVEDGEKIADLAINNAQSRLK--QAKKVVRKRVQSGPALPGKLADCTS 408

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TELF+VEGDSAGGSAKQ R+R  QA++PLRGKILN       ++  +Q++ D+  
Sbjct: 409 QDPARTELFLVEGDSAGGSAKQGRSREFQAIMPLRGKILNTWEVEPTQVLASQEVHDIAV 468

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+G    S      LRY K+ I+ DAD DGAHIA+LL   F +    L+E  H+ +  PP
Sbjct: 469 AIGVDPGSDDL-AGLRYGKICILADADSDGAHIATLLCALFVRHFRPLVEAGHICVAMPP 527

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANK 637
           L+RI  G +  YA D+E +Q IL+  +K   KGK+   RFKGLGEM   QL+ET M  + 
Sbjct: 528 LYRIDVGKQIFYALDDEERQIILDRIEKEKIKGKVSTQRFKGLGEMNPMQLRETTMAPDT 587

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           R L+R+ I+ + +++         L   +A +R  ++++     D
Sbjct: 588 RRLIRLTISAEDDTMMTLDKL---LAKKRASDRKSWLEQHGDLAD 629


>gi|90415523|ref|ZP_01223457.1| DNA topoisomerase IV subunit B [marine gamma proteobacterium
           HTCC2207]
 gi|90332846|gb|EAS48016.1| DNA topoisomerase IV subunit B [marine gamma proteobacterium
           HTCC2207]
          Length = 630

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 248/645 (38%), Positives = 365/645 (56%), Gaps = 26/645 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y+A  I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A+ I+V+L
Sbjct: 2   STYNAEDIEVLTGLDPVRKRPGMY---TDTARPNHLAQEVIDNSVDEALAGHASRIDVTL 58

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G L+V D+GRG+PV+ HP+      +E+IL+TLH+GGKF N  Y+ SGGLHGVG+SV
Sbjct: 59  HKDGSLSVCDDGRGMPVDIHPEQ-GIPGVEVILSTLHSGGKFSNKNYQFSGGLHGVGVSV 117

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALSD+L +TV R   +    F+ G   S L+  +   +   GT + F P+  I+ D  
Sbjct: 118 VNALSDKLELTVKRGGNVHQITFANGDKTSDLQVIDSCGQRNTGTILRFWPN-SIYFDSV 176

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F   RL  + ++KA L   +   +  +          E EE+++  GL+ YL   L+  
Sbjct: 177 KFSLLRLRHVLRAKAVLCSGLTVSFYDE-------NTDESEEWHYQDGLQDYLSGSLQGW 229

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
            ++ +  F G      +     +WA+ W  +  +    SY N I T +GGTH +GLR  L
Sbjct: 230 DILPATPFIGTY---ASANEAADWAVQWMPDGGDLVQESYVNLIPTPQGGTHVNGLRTGL 286

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E      R + +  DD+      +LS  + +P+F+GQTK +L S  A   V 
Sbjct: 287 LDAMREFCEFRNLLPRGVKLTPDDIWDRCSFVLSSKLEDPQFSGQTKDRLSSRQAAAFVS 346

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             ++D F  +L Q+  EA KL E  I  ++ R+R    ++V RK   +   LPGKLADCS
Sbjct: 347 GVVKDSFSLWLNQHTEEAEKLAELCIFSAQSRMR--ASKKVVRKKITQGPALPGKLADCS 404

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                  E+F VEGDSAGGSAKQARNR NQA++PLRGKILN     S++I  +Q++ D+ 
Sbjct: 405 SAEPERCEIFFVEGDSAGGSAKQARNRENQAIMPLRGKILNTWEVDSQEILGSQEVHDIS 464

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG     +   E LRY KV I+ DAD DG HIA+L+   F +    L+   H+++  P
Sbjct: 465 VALGIDPGLENL-EKLRYHKVCILADADSDGLHIATLICALFVRHFRPLVTAGHVYVAMP 523

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDAN 636
           PLFRI  G +  YA DE  K+ IL+  +   K GK+ + RFKGLGEM   QL+ET M+ +
Sbjct: 524 PLFRIDVGKEVFYALDESEKEGILDRIEAENKRGKVNVQRFKGLGEMNPLQLRETTMNPD 583

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
            R L+++ ++ D N+          L   +A +R  +++ + +  
Sbjct: 584 TRRLVQLTVDTDDNTDSTMDML---LAKKRAPDRRSWLESKGNLA 625


>gi|330723480|gb|AEC45850.1| Topoisomerase IV subunit B [Mycoplasma hyorhinis MCLD]
          Length = 649

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 238/652 (36%), Positives = 363/652 (55%), Gaps = 32/652 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y   ++++L+GL+ VR RPGMYIG TD + LHHL  E++ NA+DE +AG+A  I VSL
Sbjct: 2   SSYTVENLKVLKGLDAVRKRPGMYIGSTDFEGLHHLVWEIVSNAVDEALAGFAKNIYVSL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + NG + V D+GRGIP+E H      S +E++ T LHAGGKF +  Y+ SGGLHGVG SV
Sbjct: 62  EENGSIVVEDDGRGIPIEKH--TSGLSGVELVFTELHAGGKFSDEVYKNSGGLHGVGSSV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS +L V V + N  +  KF  G  +          NK+GTR+ F PD KIF  +  
Sbjct: 120 VNALSSKLIVNVYKNNKNYQTKFINGGQIEQRTTVVGDSNKKGTRVQFWPDKKIF-AQNK 178

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F    + +  +   +L   +K          E     +KE F+F  G+K +++   + ++
Sbjct: 179 FSFDMISERLRETCFLISELKITL-------EDQITFQKEAFFFKNGIKDFVEFINQGKT 231

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTR 340
           L++ +       ++      VE A  + +   + I S+ N I T  GGTHE GL+ AL R
Sbjct: 232 LLNKQAALINETQEKI---NVEIAFQYTDSYSDSIISFVNNIKTKSGGTHELGLKQALVR 288

Query: 341 GIKKYAELT--QNKRAISIISDDLMISAVGILSVFIRE--PEFAGQTKTKLVSLDAQRTV 396
               +A+       +  ++   D+      +LS+ + E   EF GQTK KL +  A+  V
Sbjct: 289 VFNDFAQQKSIFKNKTHTLDILDIKEGLTLVLSLKVPEFLLEFVGQTKDKLGTQIAKSVV 348

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR---EVNRKTAIRKLRLPGKL 453
           E+        +L +N  EA K++  + +  ++R+  +  +   + ++  +  K  L GKL
Sbjct: 349 EDICYKQVLLWLNKNQQEANKIINKIKDAFDQRMSTKLSKIESKKSKDASKEKKILSGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           A          ELFIVEG+SAGGSAK  R+R  QA+LPL+GKI+N        +  N +I
Sbjct: 409 APAQSKNKAEKELFIVEGESAGGSAKLGRDRKFQAILPLKGKIINAEKTRLIDLLKNNEI 468

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
           + ++ +LG      +   +L Y+K+IIMTDAD DGAHI  LLLTF ++ M +LIE+ H++
Sbjct: 469 VAIISSLGTGIGQDFNINNLEYDKIIIMTDADTDGAHIQILLLTFIFRYMKELIEKGHVY 528

Query: 574 LISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           +  PPL++I+ +  ++VYA +E   ++I+E      K   ++ R+KGLGEM A QL +T 
Sbjct: 529 IAQPPLYKISFKNKEAVYAWNENELKQIIE-----NKSNFDLQRYKGLGEMNAQQLWDTT 583

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF-IDD 683
           M+  KRTL++V+I      L   +  I  LMG K D R ++I+    F +DD
Sbjct: 584 MNPEKRTLIKVKIED----LAIAERRIFTLMGDKIDIRKQWIKNNVHFSLDD 631


>gi|315179146|gb|ADT86060.1| DNA topoisomerase IV subunit B [Vibrio furnissii NCTC 11218]
          Length = 626

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 255/645 (39%), Positives = 359/645 (55%), Gaps = 24/645 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AGYA  ++V 
Sbjct: 2   TEQYNAGAIEVLNGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGYATKVQVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+    S +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + VTV R   ++   F  G  +S L       R  RGT + F P+ K F   
Sbjct: 118 VVNALSKRVEVTVRRDGQVYDIAFEHGDKVSDLTVTGTCGRRNRGTSVHFWPETKYFDSP 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F   RL+   ++KA L   ++  +S      E         +++  GLK YL   ++ 
Sbjct: 178 N-FSVTRLINNLRAKAVLCPGLEITFSDKVNNNE-------YRWFYEDGLKDYLAEGVKG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
            +L+  E FTG+   +     T               SY N I T +GGTH +GLR  L 
Sbjct: 230 YTLLPEEPFTGEFSAETEA-ATWAVIWLPEGGEMITESYVNLIPTAQGGTHVNGLRQGLL 288

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R + +  +D+      +LSV +++P+FAGQTK +L S      V  
Sbjct: 289 DAMREFCEFRNLLPRGVKLTGEDVFDRCAYVLSVKMQDPQFAGQTKERLSSRQTAAFVSG 348

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L + P  A +L E  I  +  R+R    ++V RK       LPGKL DCSQ
Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEVCIANAHRRMR--AAKKVVRKKVASGPALPGKLTDCSQ 406

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN      +++  +Q++ D+  
Sbjct: 407 QDLSRTELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVSGDQVLGSQEVHDISV 466

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG    S   E  LRY KV I+ DAD DG HIA+LL   F +    L+ + H+++  PP
Sbjct: 467 ALGIDPDSDNLET-LRYGKVCILADADSDGLHIATLLCALFTRHFSALVREGHIYVAMPP 525

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+RI  G +  YA D+  K  ILE   K  K K+ + RFKGLGEM   QL+ET MD N R
Sbjct: 526 LYRIDCGKEVFYALDDNEKDAILERLAKK-KAKVNVQRFKGLGEMNPIQLRETTMDPNTR 584

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            L+++ I+      K T++ ++ L+G K AD+R  ++Q      +
Sbjct: 585 RLVQLTIDD----AKATEEMMDMLLGKKRADDRRNWLQSNGDLAE 625


>gi|304372931|ref|YP_003856140.1| Topoisomerase IV subunit B [Mycoplasma hyorhinis HUB-1]
 gi|304309122|gb|ADM21602.1| Topoisomerase IV subunit B [Mycoplasma hyorhinis HUB-1]
          Length = 649

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 237/652 (36%), Positives = 363/652 (55%), Gaps = 32/652 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y   ++++L+GL+ VR RPGMYIG TD + LHHL  E++ NA+DE +AG+A  I VSL
Sbjct: 2   SSYTVENLKVLKGLDAVRKRPGMYIGSTDFEGLHHLVWEIVSNAVDEALAGFAKNIYVSL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + NG + V D+GRGIP+E H      S +E++ T LHAGGKF +  Y+ SGGLHGVG SV
Sbjct: 62  EENGSIVVEDDGRGIPIEKH--TSGLSGVELVFTELHAGGKFSDEVYKNSGGLHGVGSSV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS +L V V + N  +  KF  G  +          NK+GTR+ F PD KIF  +  
Sbjct: 120 VNALSSKLIVNVYKNNKNYQTKFINGGQIEQRTTVVGDSNKKGTRVQFWPDKKIF-AQNK 178

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F    + +  +   +L   +K          E     +KE F+F  G+K +++   + ++
Sbjct: 179 FSFDMISERLRETCFLISELKITL-------EDQITFQKEAFFFKNGIKDFVEFINQGKT 231

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTR 340
           L++ +       ++      VE A  + +   + I S+ N I T  GGTHE GL+ AL R
Sbjct: 232 LLNKQAALINETQEKI---NVEIAFQYTDSYSDSIISFVNNIKTKSGGTHELGLKQALVR 288

Query: 341 GIKKYAELT--QNKRAISIISDDLMISAVGILSVFIRE--PEFAGQTKTKLVSLDAQRTV 396
               +A+       +  ++   D+      +LS+ + E   EF GQTK KL +  A+  V
Sbjct: 289 VFNDFAQQKSIFKNKTHTLDILDIKEGLTLVLSLKVPEFLLEFVGQTKDKLGTQIAKSVV 348

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR---EVNRKTAIRKLRLPGKL 453
           E+        +L +N  +A K++  + +  ++R+  +  +   + ++  +  K  L GKL
Sbjct: 349 EDICYKQVLLWLNKNQQDANKIINKIKDAFDQRMSTKLSKIESKKSKDASKEKKILSGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           A          ELFIVEG+SAGGSAK  R+R  QA+LPL+GKI+N        +  N +I
Sbjct: 409 APAQSKNKAEKELFIVEGESAGGSAKLGRDRKFQAILPLKGKIINAEKTRLIDLLKNNEI 468

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
           + ++ +LG      +   +L Y+K+IIMTDAD DGAHI  LLLTF ++ M +LIE+ H++
Sbjct: 469 VAIISSLGTGIGQDFNINNLEYDKIIIMTDADTDGAHIQILLLTFIFRYMKELIEKGHVY 528

Query: 574 LISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           +  PPL++I+ +  ++VYA +E   ++I+E      K   ++ R+KGLGEM A QL +T 
Sbjct: 529 IAQPPLYKISFKNKEAVYAWNENELKQIIE-----NKSNFDLQRYKGLGEMNAQQLWDTT 583

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF-IDD 683
           M+  KRTL++V+I      L   +  I  LMG K D R ++I+    F +DD
Sbjct: 584 MNPEKRTLIKVKIED----LAIAERRIFTLMGDKIDIRKQWIKNNVHFSLDD 631


>gi|294507492|ref|YP_003571550.1| DNA gyrase subunit B [Salinibacter ruber M8]
 gi|294343820|emb|CBH24598.1| DNA gyrase subunit B [Salinibacter ruber M8]
          Length = 643

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 269/650 (41%), Positives = 379/650 (58%), Gaps = 18/650 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y    I +LEGLEPVR RPGMYIGGT    LHH+  EV+DNA+DE   GYA+ IEV L 
Sbjct: 4   TYTGEDIDVLEGLEPVRKRPGMYIGGTGRPGLHHILWEVVDNAVDEATNGYASRIEVVLH 63

Query: 103 GNG-FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
            +G  ++V DNGRGIPV++HP+     T+++ILTTLH+GGKFD S Y  SGGLHGVG+SV
Sbjct: 64  EDGESISVSDNGRGIPVDDHPE-KGVPTVQLILTTLHSGGKFDGSNYITSGGLHGVGVSV 122

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+EL  TV R    + Q+F +G P++ L+  ++     GT I FRPDP IF     
Sbjct: 123 VNALSEELVATVKRDGQEYQQRFRQGTPVTGLDTTKESARGTGTDIYFRPDPDIFESV-E 181

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD + + +    K YL+  +K  +  +          E+ E +  GG++ YL   +E+  
Sbjct: 182 FDPSWIREHLDVKTYLNRDLKIIFRDE-------TSGERHELHHEGGIQEYLDYLVEDLQ 234

Query: 282 LISSEIFTGKTEKKGTHRGTV-EWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALT 339
           +          E          E A+ W +    ++ ++ N I T++GGTHE GL+  + 
Sbjct: 235 VSPIHDDVFMMEDDDLDGDGRLEIALQWTDAPKEQLHTFVNGIPTEDGGTHEQGLKSGIR 294

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             I+ + +        + I  DD     VGI+++F  +P+F GQTK KL +   +  V  
Sbjct: 295 AVIRSFMDTHDLVPHRLEIKGDDTREGLVGIVNLFHVDPQFQGQTKDKLNNPSVRSQVSG 354

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK--LRLPGKLADC 456
           ALR   + YL  +      +   V++ ++ R  RR     +   +  K  L+LPGKLADC
Sbjct: 355 ALRTELEQYLNDHSSTGEAIASRVVQAAKARRARRSASGGSSGRSGSKSRLQLPGKLADC 414

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S +     ELFIVEGDSAGGSAKQAR+R  QAVLPLRGK+LN   A  ++++NN+++ ++
Sbjct: 415 SSSTPSECELFIVEGDSAGGSAKQARDRETQAVLPLRGKVLNAEQATLDRVQNNKELSNI 474

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           VQALGC         DLRY KVI++ DAD DG HIA+LLLTFFY+ M  LIE   + +  
Sbjct: 475 VQALGCGIGDALDLSDLRYRKVILLMDADSDGHHIATLLLTFFYRYMRPLIEGGFVHIAQ 534

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDA 635
           PPL+RI  G ++ +A DE  K++IL+E +  G+   ++I RFKGLGEM+   L ET +  
Sbjct: 535 PPLYRIEAGKETHWALDEPDKEQILDEIRSDGRNPNVDIQRFKGLGEMMPDTLNETTLSP 594

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             R LL V I      +  T+ +I +LMG  +  RFKFI + A+  D++ 
Sbjct: 595 EGRRLLEVSIPDTERMV--TEQTITELMGRDSSARFKFIMQHAAEADELD 642


>gi|238760033|ref|ZP_04621184.1| DNA topoisomerase 4 subunit B [Yersinia aldovae ATCC 35236]
 gi|238701720|gb|EEP94286.1| DNA topoisomerase 4 subunit B [Yersinia aldovae ATCC 35236]
          Length = 631

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 248/648 (38%), Positives = 362/648 (55%), Gaps = 26/648 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
              +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  I+V
Sbjct: 2   TESSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARRIDV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +  L V+D+GRG+PV+ HP+      +E+I+  LHAGGKF N  Y+ SGGLHGVGI
Sbjct: 59  ILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELIMCRLHAGGKFSNKNYQFSGGLHGVGI 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS  + VTV R + I+S  F  G  +  L+      +   GT + F PD   F  
Sbjct: 118 SVVNALSKRVEVTVRRDSQIYSIAFENGDKVQELQVIGTCGKRNTGTSVHFWPDVSFFDS 177

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F  +RL  + ++KA L   V+  +       E       + + +  GL  YL   ++
Sbjct: 178 PR-FSVSRLSHLLKAKAVLCPGVEIVFKDLVNNTE-------QRWCYADGLTDYLMEAVD 229

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336
               +  + F G           ++WA+ W  E  E    SY N I T +GGTH +GLR 
Sbjct: 230 GLITLPEKAFVGSFAGDTE---AIDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 286

Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            L   ++ + E      R + + +DD+      +LSV +++P+FAGQTK +L S      
Sbjct: 287 GLLDAMRDFCEYRNILPRGVKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 346

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           V   ++D F  +L QN   A +L E  I  ++ R+R    ++V RK       LPGKLAD
Sbjct: 347 VSGVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C+      TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D
Sbjct: 405 CTSQDLSMTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 464

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  A+G    S+     LRY K+ I+ DAD DG HIA+LL   F +    L+   H+++ 
Sbjct: 465 ISVAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVRNGHVYVA 523

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+RI  G +  YA DEE K  +LE+ K+  +GK  + RFKGLGEM   QL+ET +D 
Sbjct: 524 MPPLYRIDLGKEVFYALDEEEKAGVLEQLKRK-RGKPNVQRFKGLGEMNPLQLRETTLDP 582

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           N R L+++ I+ D   +  T   ++ L+  K +++R  ++QE+    +
Sbjct: 583 NTRRLVQLTISDD--DIDKTMAMMDMLLAKKRSEDRRNWLQEKGDTAE 628


>gi|15602235|ref|NP_245307.1| DNA topoisomerase IV subunit B [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|12720616|gb|AAK02454.1| ParE [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 632

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 260/647 (40%), Positives = 364/647 (56%), Gaps = 24/647 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + NY A  I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE +AGYAN IEV 
Sbjct: 2   TSNYSAQEITVLKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALAGYANKIEVV 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+DNGRG+PV+ HP     S +E+ILT LHAGGKF N  YE SGGLHGVGIS
Sbjct: 59  LHKDQSLEVIDNGRGMPVDIHP-VEKLSGVEVILTKLHAGGKFSNKNYEFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS+ + VTV R   ++   F  G  +  LE      R   GT + F+P+PK F   
Sbjct: 118 VVNALSERVDVTVKRNGEVYKIAFENGRKVEELEVIGTCGRRNTGTTVHFKPNPKYFDSD 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL  + ++KA L   ++  +       E       + + +  GL  YL   +  
Sbjct: 178 -KFSVSRLRHLLRAKAVLCSGLEIKFIDKINQTE-------DCWCYEDGLADYLSEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +    F G  +        V WA+ W  E  +    SY N I T +GGTH +GLR  
Sbjct: 230 LETLPETPFIGDFKGDTE---AVSWALLWLPEGGDLLSESYVNLIPTIQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + +DD+      +LS+ +++P+FAGQTK +L S  +   V
Sbjct: 287 LLDAMREFCEFRNLLPRGVKLSADDIWERCAYVLSLKMQDPQFAGQTKERLSSRQSAVFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L Q+  +A  L E  I  ++ RLR    ++V RK  +    LPGKLADC
Sbjct: 347 AGVVKDAFSLWLNQHVQQAELLAEMAISSAQRRLR--AAKKVVRKKLVSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           SQ     TELF+VEGDSAGGSAKQAR+R  QA+LPLRGKILN     SE++ ++ +I D+
Sbjct: 405 SQQDLDKTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSSEQVLSSSEIHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             ALG    ++     LRY KV I+ DAD DG HIA+LL   F +    L+++ H+++  
Sbjct: 465 AVALGIDPDNEDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQKGHVYVAM 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G    YA DE  K  IL+  K   KGK  + RFKGLGEM   QL+ET MD N
Sbjct: 524 PPLYRIDLGKDVFYALDESEKDAILDRLKGK-KGKPNVQRFKGLGEMNPLQLRETTMDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++    +      T + ++ L+  K A++R  ++Q +   +D
Sbjct: 583 TRRLVQLTYALEQEEQAATLELMDMLLAKKRAEDRKNWLQTKGDQVD 629


>gi|325962992|ref|YP_004240898.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV)
           subunit beta [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469079|gb|ADX72764.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Arthrobacter phenanthrenivorans Sphe3]
          Length = 702

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 239/700 (34%), Positives = 344/700 (49%), Gaps = 61/700 (8%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + S +Y A  + +LEGLE VR RPGMYIG TD + L H   E+IDN++DE +AG+ + I+
Sbjct: 2   APSSDYTARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALAGFGHDIK 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           + L  +  + + D+GRGIP++  PK    + +E++ T LHAGGKF   +Y  SGGLHGVG
Sbjct: 62  IILHADNSVEIHDDGRGIPIDKEPK-TGLTGVEVVFTKLHAGGKFGGGSYTASGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------------------- 199
            SVVNALS  L V V R    +   F RG P    +   K                    
Sbjct: 121 ASVVNALSSRLDVEVDRGGKTYKMSFRRGEPGRFQDTGSKSDPAAPFTPFVDDSVLDIVG 180

Query: 200 ---RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
              R   GTRI +  D +IF   A F    L    +  ++L   +K     ++ I    G
Sbjct: 181 KAKRGVTGTRIRYWADRQIFTPDAKFSYDELAARARQTSFLVPGLKLTVRDERRIPGTPG 240

Query: 257 IP--EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT----------------H 298
                +E F+  GG+  +++    + ++       G  + K T                 
Sbjct: 241 EAGVHEEVFHHDGGISEFVEFLAADPAVTDVWRLHGSGKFKETVPVLDERGHSQLAEVER 300

Query: 299 RGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK---RA 354
              V+ A+ W         S+ N I T +GGTH+SG   AL +  +K  E    K     
Sbjct: 301 DCEVDVALRWGIGYESTVRSFVNIISTPKGGTHQSGFEQALVKTFRKAVESNARKLKAGN 360

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RTVENALRDPFDHYLVQ 410
             I  DD+      +L+V + EP+F GQTK  L +   +    + VE  +          
Sbjct: 361 DKIEKDDIFAGLTAVLTVRLAEPQFEGQTKEILGTSAVRAIVAKVVEREISAKLSSANRN 420

Query: 411 NPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           +  ++  LLE ++   + R+  R  +E   RK A+    +P KLADC  +    +ELFIV
Sbjct: 421 DKAQSALLLEKIVNEMKSRISARVHKETQRRKNALETSSMPTKLADCRTDDVDRSELFIV 480

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           EGDSA G+AK AR+   QA+LP+RGKILNV  A    + +N +   L+Q +G  +   + 
Sbjct: 481 EGDSALGTAKLARSSDFQALLPIRGKILNVQKASVGDMLSNAECAALIQVVGAGSGRSFD 540

Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI------T 583
               RY KVI+MTDADVDGAHI +LLLT F++ M  +IE+  +F   PPL R+       
Sbjct: 541 LAAARYGKVILMTDADVDGAHIRTLLLTLFFRYMRPMIEEGRVFAAVPPLHRVEVINAGQ 600

Query: 584 QGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRTLLR 642
           +  + +Y + E     +L    K GK  K  I R+KGLGEM A QL ET MD   RTL +
Sbjct: 601 KANEMIYTYSEAELHVLLARLAKEGKRYKEPIQRYKGLGEMDAEQLAETTMDPRHRTLRK 660

Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           V I     + K  ++  + LMG+    R  FI   A+ +D
Sbjct: 661 VGIE----NAKQAEEIFDLLMGSDVSPRKDFIIAGAASLD 696


>gi|292486926|ref|YP_003529796.1| DNA topoisomerase IV subunit B [Erwinia amylovora CFBP1430]
 gi|292900680|ref|YP_003540049.1| topoisomerase IV subunit B [Erwinia amylovora ATCC 49946]
 gi|291200528|emb|CBJ47657.1| topoisomerase IV subunit B [Erwinia amylovora ATCC 49946]
 gi|291552343|emb|CBA19388.1| DNA topoisomerase IV, B subunit [Erwinia amylovora CFBP1430]
 gi|312170996|emb|CBX79255.1| DNA topoisomerase IV, B subunit [Erwinia amylovora ATCC BAA-2158]
          Length = 631

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 253/646 (39%), Positives = 362/646 (56%), Gaps = 26/646 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y+A SI +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  +EV L
Sbjct: 4   SSYNADSIEVLSGLEPVRRRPGMY---TDTARPNHLGQEVIDNSVDEALAGHAKRVEVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V+D+GRG+PV+ HP+      +E+I   LHAGGKF N  Y+ SGGLHGVGISV
Sbjct: 61  HPDQSLEVIDDGRGMPVDIHPE-EGVPAVELIFCRLHAGGKFSNKNYQFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + VTV R   ++   F  G  +  L     V +   GTR+ F PD + F D  
Sbjct: 120 VNALSKRVEVTVRRNAEVYEMAFENGDKVQDLTVTGTVAKRNTGTRVQFWPD-ESFFDSP 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L   V+  +       E       + + +  GL  YL   +   
Sbjct: 179 RFSVSRLSHLLKAKAVLCPGVEIVFKDQLNKTE-------QSWCYADGLTDYLMEAVNGL 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
            L+  + F G           V+WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 PLLPEKPFVGAFSGDVE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGL 288

Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V 
Sbjct: 289 LDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             ++D F  +L QN   A  L E  I  ++ R+R    ++V RK       LPGKLADCS
Sbjct: 349 GVVKDAFSLWLNQNVQAAEMLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADCS 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+ 
Sbjct: 407 AQDLSRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S+     LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  P
Sbjct: 467 VAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRTLVKNGHVYVAMP 525

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G +  YA DEE K  ILE+ K+  KGK  + RFKGLGEM   QL+ET +D N 
Sbjct: 526 PLYRIDLGKEVYYALDEEEKAGILEQLKRK-KGKPGVQRFKGLGEMNPLQLRETTLDPNT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++ I+     +  T   ++ L+  K +++R  ++QE+    +
Sbjct: 585 RRLVQLTISD--EDVNQTLAVMDMLLAKKRSEDRRNWLQEKGDSAE 628


>gi|269468716|gb|EEZ80341.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [uncultured SUP05 cluster bacterium]
          Length = 627

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 245/642 (38%), Positives = 365/642 (56%), Gaps = 22/642 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YDA+SI +L GLEPVR RPGMY   TD +  +HL  EVIDN++DE +AG+A+ I V L  
Sbjct: 4   YDAASIEVLTGLEPVRKRPGMY---TDTERPNHLAQEVIDNSVDEAVAGHASKINVVLYK 60

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           NG L+V D+GRG+PV+ HPK   +  +E+ILT LHAGGKF N +Y+ SGGLHGVGISVVN
Sbjct: 61  NGSLSVEDDGRGMPVDIHPK-EGQPGVEVILTKLHAGGKFSNDSYQFSGGLHGVGISVVN 119

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222
           ALS  + + + R    +   F+ G   + LE+   V +   GT + F PD + F D   F
Sbjct: 120 ALSTSVEIWIKRDAKQYYITFADGFKKTELEELGNVGKRNTGTMVKFMPDTQ-FFDTIKF 178

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
              RL    +SKA L   ++  +  + +          +++ +  GLK YL   L+    
Sbjct: 179 SVTRLRHNLRSKAVLCPGLEINFYNEVD-------GTTDKWIYKEGLKDYLSMALDGLDC 231

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGI 342
           + +  F          +     A      N    SY N I T  GGTH +GLR  LT  +
Sbjct: 232 LPTSPFVVDFTS-PEQQLNCSLAWTEYNTNVVAESYVNLIPTINGGTHVNGLRSGLTDAL 290

Query: 343 KKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
           K++ E      + I I  DD+      +LS+ I +P+F+GQTK +L S ++   V N ++
Sbjct: 291 KEFCEFRNLIPKNIKITPDDVWQKIAYVLSIKILDPQFSGQTKERLSSRESAGFVSNVIK 350

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIA 461
           D F  +L Q+   A K+ E  I  ++ RL+    +++ RK  I    LPGKL+DC+ +  
Sbjct: 351 DAFSLWLNQHTNVAEKIAELAIMNAQARLK--TGKKIVRKKIISGPALPGKLSDCTSSDL 408

Query: 462 HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
           + TE+F+VEGDSAGGSAKQAR++  QA+LPLRGKILN     SE++  + +I D+  A+G
Sbjct: 409 NQTEVFLVEGDSAGGSAKQARDKEYQAILPLRGKILNTWEVDSEQVLASNEIHDISVAIG 468

Query: 522 CRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581
               S     +LRY K+ I+ DAD DGAHIA+L+   F +    L+ + H+F+  PPL+R
Sbjct: 469 LEPDSSDL-SELRYGKICILADADSDGAHIATLICALFVKHFPKLVREGHVFVAMPPLYR 527

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRTL 640
           +  G +  YA D   +  I+ + +   K  KI++ RFKGLGEM  SQL+ET M  + R L
Sbjct: 528 VDAGKQVHYALDNNERDSIIRKIESENKRVKIQVQRFKGLGEMNPSQLRETTMFPDTRRL 587

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           +++ ++  L   +     ++K    +A +R ++++E+ +  +
Sbjct: 588 IQLTLDNPLQVEQTMDMLLSK---KRAPDRKQWLEEKGNLAN 626


>gi|254362507|ref|ZP_04978612.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Mannheimia haemolytica
           PHL213]
 gi|153094104|gb|EDN75008.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Mannheimia haemolytica
           PHL213]
          Length = 635

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 254/650 (39%), Positives = 370/650 (56%), Gaps = 26/650 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           +   Y A  I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE ++G+A+ I+V
Sbjct: 2   SEKRYGADEITVLKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALSGFADKIDV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +  L VVDNGRG+PV+ H      S +E+ILT LHAGGKF N  Y  SGGLHGVGI
Sbjct: 59  ILHADNSLEVVDNGRGMPVDIHS-TEKISGVELILTKLHAGGKFSNKNYTFSGGLHGVGI 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS+ + + + R   ++S  F+ G+ +  L       + + GT + F P+PK F  
Sbjct: 118 SVVNALSERVEIQIKRGGEVYSIAFANGVKVEDLTVIGTCPKKQTGTTVRFYPNPKYFDS 177

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F  +RL  + ++KA L  ++   +       E       E +Y+  GL  YL   L 
Sbjct: 178 PR-FSVSRLRHLLRAKAVLCPKLTINFIDKINNTE-------ESWYYEDGLSDYLSEALN 229

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336
               + +  F G    +      V WA+ W  E  E    SY N I T +GGTH +GLR 
Sbjct: 230 GYETVPNPPFIGDVTAETE---AVSWALTWLPEGGELVAESYVNLIPTAQGGTHVNGLRN 286

Query: 337 ALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            L + + ++ E+     + + + +DD+      +LS+ I+EP+FAGQTK +L S  A   
Sbjct: 287 GLLKAMVEFCEIHNLLPKGVKLTADDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSY 346

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           V++ L+D F  +L QN      + E  I  ++ R+R    ++V RK  +    LPGKLAD
Sbjct: 347 VDSTLKDAFSLWLNQNVQTGKLIAEMAISSAQSRMR--AAKKVVRKKLVSGPALPGKLAD 404

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C+      TELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN     S+++  +Q++ D
Sbjct: 405 CTAQDLSRTELFLVEGDSAGGSAKQARDKEYQAILPLRGKILNTWEVSSDQVLASQEVHD 464

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  ALG    S    E+LRY KV I+ DAD DG HIA+LL   F +    L++  H+++ 
Sbjct: 465 IAVALGIDPDSDNL-EELRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQNGHVYVA 523

Query: 576 SPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
            PPL+RI  G  +  YA DE  K+ IL    K  KGK  + RFKGLGEM  SQL+ET M+
Sbjct: 524 MPPLYRIDIGKDEVHYALDEAEKEAILARLAKK-KGKPNVQRFKGLGEMNPSQLRETTME 582

Query: 635 ANKRTLLRVEINKDLNSLK-DTQDSINKLMGTK-ADERFKFIQERASFID 682
            + R L+++  +  +   + +T + ++ L+G K A++R +++Q R    D
Sbjct: 583 PSTRRLVQLTFDDTVEEGELNTFEIMDMLLGKKRAEDRKQWLQNRGDEAD 632


>gi|167854608|ref|ZP_02477389.1| DNA topoisomerase 4 subunit B [Haemophilus parasuis 29755]
 gi|167854363|gb|EDS25596.1| DNA topoisomerase 4 subunit B [Haemophilus parasuis 29755]
          Length = 633

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 254/650 (39%), Positives = 377/650 (58%), Gaps = 26/650 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           +   Y A  I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE ++G+AN I+V
Sbjct: 2   SEKRYGADEITVLKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALSGFANQIDV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +  L VVDNGRG+PV+ H      S +E+ILT LHAGGKF N  Y  SGGLHGVGI
Sbjct: 59  ILHSDNSLEVVDNGRGMPVDIHS-TEKISGVELILTKLHAGGKFSNKNYTFSGGLHGVGI 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS+ + +T+ R   I++  F+ G+ +  L+      + + GT + F P+PK F  
Sbjct: 118 SVVNALSESVEITIKRNGEIYTIAFANGVKVEELKVIGSCPKRQTGTTVRFYPNPKYFDS 177

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F  +RL  + ++KA L  ++   ++        +    +E +Y+  GL+ YL   L+
Sbjct: 178 P-KFSVSRLRHLLRAKAVLCPKLTINFTD-------HINNTQETWYYEDGLRDYLTDTLK 229

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRV 336
               + + +F G+   +      V WA++W  E  E    SY N I T  GGTH +GLR 
Sbjct: 230 EYEYLPNPLFVGEVIGETE---AVSWALSWLTEGGEQINESYVNLIPTALGGTHVNGLRQ 286

Query: 337 ALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            L + + ++ +      + + + +DD+      +LS+ ++EP+FAGQTK +L S  A   
Sbjct: 287 GLFKAMAEFCDFRNLLPKGVKLTADDVWGRCCYVLSLKMQEPQFAGQTKERLSSRQAASY 346

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           VEN+++D F  +L QN   A +L E  I  ++ RLR   +++V RK  +    LPGKLAD
Sbjct: 347 VENSVKDAFSLWLNQNVQVAEQLAEMAISSAQNRLR--AEKKVVRKKLVSGPALPGKLAD 404

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C       TELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN      +++  + ++ D
Sbjct: 405 CISQDLMRTELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVSPDQVLASTEVHD 464

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  ALG    ++     LRY KV I+ DAD DG HIA+LL   F +    L++  H+++ 
Sbjct: 465 IAVALGIDPDNEDI-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPTLVKNGHVYVA 523

Query: 576 SPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
            PPL+RI  G  +  YA DE  K+ IL    K  KGK  + RFKGLGEM  SQL+ET MD
Sbjct: 524 MPPLYRIDIGKDEVHYALDESEKEAILARLAKK-KGKPNVQRFKGLGEMNPSQLRETTMD 582

Query: 635 ANKRTLLRVEINKDLNSLK-DTQDSINKLMGTK-ADERFKFIQERASFID 682
            N R L+++ +  + +  +  T + ++ L+  K A++R +++Q+R    D
Sbjct: 583 PNTRRLVQLTLEDNSDDEEVSTFELMDMLLAKKRAEDRKQWLQDRGDEAD 632


>gi|113971563|ref|YP_735356.1| DNA topoisomerase IV subunit B [Shewanella sp. MR-4]
 gi|114046265|ref|YP_736815.1| DNA topoisomerase IV subunit B [Shewanella sp. MR-7]
 gi|113886247|gb|ABI40299.1| DNA topoisomerase IV subunit B [Shewanella sp. MR-4]
 gi|113887707|gb|ABI41758.1| DNA topoisomerase IV subunit B [Shewanella sp. MR-7]
          Length = 628

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 246/644 (38%), Positives = 353/644 (54%), Gaps = 22/644 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y + +I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AG+A  IEV 
Sbjct: 2   TNQYTSDAIEVLNGLDPVKRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHATKIEVV 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V D+GRG+PV+ HP+      +E+ILT LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHTDNSLEVTDDGRGMPVDIHPE-EGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + VTV R   ++   F  G  +  L+      R   GTR+ F PD   F   
Sbjct: 118 VVNALSRRVEVTVRRDGQVYDIAFENGFKVEELKVTGTCGRRNTGTRVHFWPDASYFDSA 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  ++L+ + ++KA L   ++  ++            E  E+Y+  GL  YL+  + +
Sbjct: 178 N-FSNSKLIYLLRAKAVLCPGLRIKFTNK-------HTNEVHEWYYESGLTDYLKAAVGD 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
             ++  E F G   K                 +    SY N I T  GGTH +G R  L 
Sbjct: 230 NLMLPEEPFIGSF-KGQIEAADWAITWLPEGGDAINESYVNLIPTPLGGTHVNGFRQGLL 288

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R I +  +D+   A  ILSV +++P+FAGQTK KL S  +   V  
Sbjct: 289 ESMREFCEFRNLIPRGIKLSPEDIWDRAAFILSVKMQDPQFAGQTKEKLSSRQSSAFVSG 348

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            +RD F  +L  N   A  L E  I  +++RL+  K  +V RK       LPGKL DCS 
Sbjct: 349 IVRDAFSLWLNSNTELAESLAEMCINNAQKRLKAAK--KVARKKVTSGPALPGKLTDCSG 406

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 ELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     + ++  +Q++ D+  
Sbjct: 407 QDPMRGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASQEVHDISV 466

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+GC   S     +LRY K+ I+ DAD DG HIA+LL   F +    L+EQ H+++  PP
Sbjct: 467 AIGCDPDSNDI-SELRYGKICILADADSDGLHIATLLCALFLKHYRVLVEQGHVYIAMPP 525

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           LFRI  G    YA DE  K+ IL+    ++ KGK++++RFKGLGEM   QL+ET MD N 
Sbjct: 526 LFRIDIGKDVYYALDEAEKEGILDRISAENKKGKVQVTRFKGLGEMNPLQLRETTMDPNT 585

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           R L+++ I+    +          L   ++ +R  +++++    
Sbjct: 586 RRLVQLTIDDAEETNSLMDML---LAKKRSPDRKNWLEDKGDMA 626


>gi|253686724|ref|YP_003015914.1| DNA topoisomerase IV, B subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251753302|gb|ACT11378.1| DNA topoisomerase IV, B subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 631

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 254/648 (39%), Positives = 363/648 (56%), Gaps = 26/648 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A  +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  I+V
Sbjct: 2   AQSSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARRIDV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF    Y+ SGGLHGVGI
Sbjct: 59  ILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSGKNYQFSGGLHGVGI 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS  + VTV R   ++   F+ G  +  L       R   GTR+ F PD + F D
Sbjct: 118 SVVNALSTRVEVTVKRDGQVYDIAFANGDKVQDLTVTGTCGRRNTGTRVHFWPD-EKFFD 176

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
            A F  +RL  + ++KA L   V+  +       E       + + +  GL  YL   + 
Sbjct: 177 SARFSVSRLTHLLKAKAVLCPGVEIIFKDKVNNTE-------QRWCYQDGLNDYLCEAVN 229

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336
               +  + F G           V+WA+ W  E  E  + SY N I T  GGTH +GLR 
Sbjct: 230 GLITLPEKPFLGSITGDTE---AVDWALLWLPEGGELLMESYVNLIPTPMGGTHVNGLRQ 286

Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            L   ++++ E      R + + +DD+      +LSV ++EP+FAGQTK +L S      
Sbjct: 287 GLLDAMREFCEFRNILPRGVKLSADDIWERCAYVLSVKMQEPQFAGQTKERLSSRQCAAF 346

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           V   ++D F  +L QN   A +L E  I  ++ R+R    ++V RK       LPGKLAD
Sbjct: 347 VSGVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C+      TELF+VEGDSAGGSAKQAR R  QA++PL+GKILN     S+++  +Q++ D
Sbjct: 405 CTSQDLSRTELFLVEGDSAGGSAKQAREREFQAIMPLKGKILNTWEVSSDEVLASQEVHD 464

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++ 
Sbjct: 465 ISVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVQGGHVYVA 523

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+RI  G +  YA DEE K  +LE+ K+  KGK  + RFKGLGEM   QL+ET +D 
Sbjct: 524 MPPLYRIDLGKEVYYALDEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPLQLRETTLDP 582

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           N R L+++ I +D   +  T   ++ L+  K +++R  ++QE+    +
Sbjct: 583 NTRRLVQLTIKED--DIDQTMAMMDMLLAKKRSEDRRNWLQEKGDKAE 628


>gi|50119294|ref|YP_048461.1| DNA topoisomerase IV subunit B [Pectobacterium atrosepticum
           SCRI1043]
 gi|49609820|emb|CAG73254.1| topoisomerase IV subunit B [Pectobacterium atrosepticum SCRI1043]
          Length = 631

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 253/648 (39%), Positives = 360/648 (55%), Gaps = 26/648 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A  +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  I+V
Sbjct: 2   AQSSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARRIDV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF    Y+ SGGLHGVGI
Sbjct: 59  ILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSGKNYQFSGGLHGVGI 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS  + VTV R   ++   F  G  +  L       R   GTR+ F PD + F D
Sbjct: 118 SVVNALSTRVEVTVKRDGQVYDIAFENGDKVQELTVTGTCGRRNTGTRVHFWPD-EKFFD 176

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
            A F  +RL  + ++KA L   V+  +       E       + + +  GL  YL   + 
Sbjct: 177 SARFSVSRLTHLLKAKAVLCPGVEIIFKDKVNNTE-------QRWCYLDGLNDYLCEAIN 229

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336
               +  + F G           V+WA+ W  E  E    SY N I T  GGTH +GLR 
Sbjct: 230 GLITLPEKPFLGSISGDTE---AVDWALLWLPEGGELLTESYVNLIPTPMGGTHVNGLRQ 286

Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            L   ++++ E      R + + +DD+      +LSV ++EP+FAGQTK +L S      
Sbjct: 287 GLLDAMREFCEFRNILPRGVKLSADDIWERCAYVLSVKMQEPQFAGQTKERLSSRQCAAF 346

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           V   ++D F  +L QN   A +L E  I  ++ R+R    ++V RK       LPGKLAD
Sbjct: 347 VSGVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C+    + TELF+VEGDSAGGSAKQAR R  QA++PL+GKILN     S+++  +Q++ D
Sbjct: 405 CTSQDLNRTELFLVEGDSAGGSAKQAREREFQAIMPLKGKILNTWEVSSDEVLASQEVHD 464

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L+   H+++ 
Sbjct: 465 ISVAIGIDPDSTDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVLGGHVYVA 523

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+RI  G +  YA DEE K  +LE+ K+  +GK  + RFKGLGEM   QL+ET +D 
Sbjct: 524 MPPLYRIDLGKEVYYALDEEEKAGVLEQLKRK-RGKPNVQRFKGLGEMNPPQLRETTLDP 582

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           N R L+++ IN +      T   ++ L+  K +++R  ++QE+    +
Sbjct: 583 NTRRLVQLTINDEEMD--QTMAMMDMLLAKKRSEDRRNWLQEKGDRAE 628


>gi|152971961|ref|YP_001337070.1| DNA topoisomerase IV subunit B [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238896538|ref|YP_002921278.1| DNA topoisomerase IV subunit B [Klebsiella pneumoniae NTUH-K2044]
 gi|262042299|ref|ZP_06015464.1| DNA topoisomerase IV [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|330008928|ref|ZP_08306334.1| DNA topoisomerase IV, B subunit [Klebsiella sp. MS 92-3]
 gi|150956810|gb|ABR78840.1| DNA topoisomerase IV subunit B [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238548860|dbj|BAH65211.1| DNA topoisomerase IV subunit B [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259040363|gb|EEW41469.1| DNA topoisomerase IV [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|328535028|gb|EGF61552.1| DNA topoisomerase IV, B subunit [Klebsiella sp. MS 92-3]
          Length = 631

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 250/646 (38%), Positives = 363/646 (56%), Gaps = 26/646 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  +EV L
Sbjct: 4   SSYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVEVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGISV
Sbjct: 61  HADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + V V R   ++S  F  G  +  L       +   GT + F PD + F D  
Sbjct: 120 VNALSKRVEVNVRRDGQVYSIAFENGEKVEDLHVTGTCGKRNTGTSVHFWPD-ESFFDSP 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L   V+  +      +E       + + +  GL  YL   +   
Sbjct: 179 RFSVSRLTHLLKAKAVLCPGVEIVFRDQVNNSE-------QSWCYADGLNDYLSEAVNGL 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
            L+  + F G    +      V+WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 PLLPEKPFVGAFSGETE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGL 288

Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V 
Sbjct: 289 LDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             ++D F  +L QN   A  L E  I  ++ RLR    ++V RK       LPGKLADC+
Sbjct: 349 GVVKDAFSLWLNQNVQAAELLAEMAISSAQRRLR--AAKKVVRKKLTSGPALPGKLADCT 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
               + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+ 
Sbjct: 407 AQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L+++ H+++  P
Sbjct: 467 VAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRTLVKEGHVYVALP 525

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G +  YA  EE K  +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N 
Sbjct: 526 PLYRIDLGKEVYYALTEEEKTGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPNT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++ I+      + T   ++ L+  K +++R  ++QE+    D
Sbjct: 585 RRLVQLVISD--EDEQQTTAIMDMLLAKKRSEDRRNWLQEKGDMAD 628


>gi|238762440|ref|ZP_04623411.1| DNA topoisomerase 4 subunit B [Yersinia kristensenii ATCC 33638]
 gi|238699425|gb|EEP92171.1| DNA topoisomerase 4 subunit B [Yersinia kristensenii ATCC 33638]
          Length = 631

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 250/648 (38%), Positives = 360/648 (55%), Gaps = 26/648 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
              +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  I+V
Sbjct: 2   TESSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARRIDV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +  L V+D+GRG+PV+ HP+      +E+I+  LHAGGKF N  Y+ SGGLHGVGI
Sbjct: 59  ILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELIMCRLHAGGKFSNKNYQFSGGLHGVGI 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS  + VTV R + I+S  F  G  +  L+      +   GT + F PD   F  
Sbjct: 118 SVVNALSKRVEVTVRRDSQIYSIAFENGDKVQDLQVIGTCGKRNTGTSVHFWPDVSFFDS 177

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F  +RL  + ++KA L   V+  +       E       + + +  GL  YL   + 
Sbjct: 178 PR-FSVSRLSHLLKAKAVLCPGVEIVFKDQVNNTE-------QRWCYADGLTDYLMEAVN 229

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336
               +    F G           ++WA+ W  E  E    SY N I T +GGTH +GLR 
Sbjct: 230 GLITLPEVPFVGSFAGDTE---AIDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 286

Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            L   ++++ E      R I + +DD+      +LSV +++P+FAGQTK +L S      
Sbjct: 287 GLLDAMREFCEYRNILPRGIKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 346

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           V   ++D F  +L QN   A +L E  I  ++ R+R    ++V RK       LPGKLAD
Sbjct: 347 VSGVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C+      TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D
Sbjct: 405 CTSQDLSMTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 464

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  A+G    S+     LRY KV I+ DAD DG HIA+LL   F +    L+   H+++ 
Sbjct: 465 ISVAIGIDPDSEDL-SQLRYGKVCILADADSDGLHIATLLCALFVRHFRALVRNGHVYVA 523

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+RI  G +  YA DEE K  +LE+ K+  +GK  + RFKGLGEM   QL+ET +D 
Sbjct: 524 MPPLYRIDLGKEVFYALDEEEKAGVLEQLKRK-RGKPNVQRFKGLGEMNPLQLRETTLDP 582

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           N R L+++ I  D   +  T   ++ L+  K +++R  ++QE+    +
Sbjct: 583 NTRRLVQLTIGDD--DIDKTMAMMDMLLAKKRSEDRRNWLQEKGDTAE 628


>gi|197336300|ref|YP_002157023.1| DNA topoisomerase IV, B subunit [Vibrio fischeri MJ11]
 gi|197317790|gb|ACH67237.1| DNA topoisomerase IV, B subunit [Vibrio fischeri MJ11]
          Length = 626

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 255/647 (39%), Positives = 359/647 (55%), Gaps = 28/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  +EV 
Sbjct: 2   TEQYNAGAIEVLNGLEPVRRRPGMY---TDTVRPNHLGQEVIDNSVDEALAGHAKKVEVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP     S +E+IL  LHAGGKF    YE SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHP-VEKVSGVELILCKLHAGGKFSGKNYEFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + VTV R   ++   F  G  +S L       R  RGT + F PD   F   
Sbjct: 118 VVNALSKRVEVTVRRDGQVYEIAFEHGDKVSDLTVTGTCGRRNRGTSVHFWPDASYFDSA 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F   RL+   ++KA L   ++  +       E         + +  GLK YL   +  
Sbjct: 178 -KFSVTRLINNLKAKAVLCPGLEIVFKDKVNDKEHN-------WCYEDGLKDYLLEGVTG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
            +L+    FTG     G      +WA+ W  E  E    SY N I T +GGTH +G+R  
Sbjct: 230 FTLLPEIPFTGAFSGTGE---AADWAVTWLPEGGELVAESYVNLIPTAQGGTHVNGMRQG 286

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + +DD+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEFRNLVPRGVKLTADDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L + P  A +L E  I  +  R+R    ++V RK       LPGKL DC
Sbjct: 347 SGVVKDAFSLWLNEKPQIAEQLAEACIANAHRRMR--AAKKVVRKKIASGPALPGKLTDC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      TELF+VEGDSAGGSAKQAR+R  QAV+PLRGKILN     ++++  +Q++ D+
Sbjct: 405 SVQDLARTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             ALG    S      LRY KV I+ DAD DG HIA+LL   + +    L++  H+++  
Sbjct: 465 SVALGIDPDSDDL-SGLRYGKVCILADADSDGLHIATLLCALYLKHFKALVQAGHVYVAM 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA DEE K+ +L+    + + KI + RFKGLGEM   QL+ET MD N
Sbjct: 524 PPLYRIDCGKEVFYALDEEEKEGVLDRLS-NKRAKINVQRFKGLGEMNPLQLRETTMDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ I+ D    + T + ++ L+G K AD+R  ++Q      +
Sbjct: 583 TRRLVQLTIDDD----EQTDEMMDMLLGKKRADDRRAWLQSNGDQAE 625


>gi|332162978|ref|YP_004299555.1| DNA topoisomerase IV subunit B [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318604198|emb|CBY25696.1| topoisomerase IV subunit B [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325667208|gb|ADZ43852.1| DNA topoisomerase IV subunit B [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862268|emb|CBX72429.1| DNA topoisomerase 4 subunit B [Yersinia enterocolitica W22703]
          Length = 631

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 249/648 (38%), Positives = 361/648 (55%), Gaps = 26/648 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
              +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A+ I+V
Sbjct: 2   TESSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAHRIDV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGI
Sbjct: 59  ILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS  + VTV R + I+S  F  G  +  L+      +   GT + F PD   F  
Sbjct: 118 SVVNALSKRVEVTVRRDSQIYSIAFENGDKVQELQVIGTCGKRNTGTSVHFWPDVSFFDS 177

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F  +RL  + ++KA L   V+  +       E       + + +  GL  YL   + 
Sbjct: 178 PR-FSVSRLSHLLKAKAVLCPGVEIVFKDQVNNTE-------QRWCYADGLTDYLMEAVN 229

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336
               +    F G           ++WA+ W  E  E    SY N I T +GGTH +GLR 
Sbjct: 230 GLITLPEVPFVGSFAGDTE---AIDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 286

Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            L   ++++ E      R + + +DD+      +LSV +++P+FAGQTK +L S      
Sbjct: 287 GLLDAMREFCEYRNILPRGVKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 346

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           V   ++D F  +L QN   A +L E  I  ++ R+R    ++V RK       LPGKLAD
Sbjct: 347 VSGVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C+      TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D
Sbjct: 405 CTSQDLSMTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 464

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  A+G    S+     LRY K+ I+ DAD DG HIA+LL   F +    L+   H+++ 
Sbjct: 465 ISVAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVRNGHVYVA 523

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+RI  G +  YA DEE K  +LE+ K+  +GK  + RFKGLGEM   QL+ET +D 
Sbjct: 524 MPPLYRIDLGKEVFYALDEEEKAGVLEQLKRK-RGKPNVQRFKGLGEMNPLQLRETTLDP 582

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           N R L+++ I  D   +  T   ++ L+  K +++R  ++QE+    +
Sbjct: 583 NTRRLVQLTIGDD--DIDKTMAMMDMLLAKKRSEDRRNWLQEKGDTAE 628


>gi|268590586|ref|ZP_06124807.1| DNA topoisomerase IV, B subunit [Providencia rettgeri DSM 1131]
 gi|291313974|gb|EFE54427.1| DNA topoisomerase IV, B subunit [Providencia rettgeri DSM 1131]
          Length = 631

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 250/646 (38%), Positives = 362/646 (56%), Gaps = 26/646 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A+ IEV L
Sbjct: 4   SSYNAEAIEVLSGLEPVRRRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHASHIEVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V+D+GRG+PV+ HP+    S +E+IL  LHAGGKF N  Y+ SGGLHGVGISV
Sbjct: 61  HADQSLEVIDDGRGMPVDIHPEM-KVSAVELILGQLHAGGKFSNKNYQFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + VTV R + ++   F  G  +  L       +   GT + F PD   F    
Sbjct: 120 VNALSKRIEVTVRRDSQVYQIAFENGDKVEDLHVIGTCGKRNTGTSVHFWPDGSYFDSP- 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F   RL    ++KA L   VK  +       E       + + +  GL  YL   ++  
Sbjct: 179 KFSVTRLTHNLKAKAVLCPGVKITFKDKLNDTE-------QSWCYSDGLTDYLMESIDGL 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +  + FTG+   +       +WA+ W  E  E    SY N I T  GGTH +GLR  L
Sbjct: 232 EALPPKPFTGEFSGETE---AAQWALLWLPEGGELLTESYVNLIPTALGGTHVNGLRQGL 288

Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E      R + + +DD+      +LSV +++P+FAGQTK +L S      V 
Sbjct: 289 LDAMREFCEFRNILPRGVKLSADDIWERCTYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             ++D F  +L QN   A +L E  I  ++ R+R    ++V RK       LPGKLADCS
Sbjct: 349 GVVKDAFSLWLNQNVQVAEQLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADCS 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     S+++  +Q++ D+ 
Sbjct: 407 SQDLSMTELFLVEGDSAGGSAKQARDREYQAIMPLRGKILNTWEVSSDEVLASQEVHDIS 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S+     LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  P
Sbjct: 467 VAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFPTLVKAGHVYMAMP 525

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G ++ YA DE  K  +LE   +  +GK  + RFKGLGEM   QL+ET +D N 
Sbjct: 526 PLYRIDLGKETFYALDESEKNAVLERLSRK-RGKPNVQRFKGLGEMNPLQLRETTLDPNT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++ I+    + ++T   ++ L+  K +++R  ++QE+    +
Sbjct: 585 RRLVQLIIDD--ENYQETLAVMDMLLAKKRSEDRRNWLQEKGDIAE 628


>gi|83815720|ref|YP_445608.1| type II DNA topoisomerase, B subunit [Salinibacter ruber DSM 13855]
 gi|83757114|gb|ABC45227.1| type II DNA topoisomerase, B subunit [Salinibacter ruber DSM 13855]
          Length = 643

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 269/650 (41%), Positives = 379/650 (58%), Gaps = 18/650 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y    I +LEGLEPVR RPGMYIGGT    LHH+  EV+DNA+DE   GYA+ IEV L 
Sbjct: 4   TYTGEDIDVLEGLEPVRKRPGMYIGGTGRPGLHHILWEVVDNAVDEATNGYASRIEVVLH 63

Query: 103 GNG-FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
            +G  ++V DNGRGIPV++HP+     T+++ILTTLH+GGKFD S Y  SGGLHGVG+SV
Sbjct: 64  EDGESISVSDNGRGIPVDDHPE-KGVPTVQLILTTLHSGGKFDGSNYITSGGLHGVGVSV 122

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+EL  TV R    + Q+F +G P++ L+  ++     GT I FRPDP IF     
Sbjct: 123 VNALSEELVATVKRDGQEYQQRFRQGTPVTGLDTTKESARGTGTDIYFRPDPDIFESV-E 181

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD + + +    K YL+  +K  +  +          E+ E +  GG++ YL   +E+  
Sbjct: 182 FDPSWIREHLDVKTYLNRDLKIIFRDE-------TSNERYELHHEGGIQEYLDYLVEDLQ 234

Query: 282 LISSEIFTGKTEKKGTHRGTV-EWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALT 339
           +          E          E A+ W +    ++ ++ N I T++GGTHE GL+  + 
Sbjct: 235 VSPIHDDVFMMEDDDLDGDGRLEIALQWTDAPKEQLHTFVNGIPTEDGGTHEQGLKSGIR 294

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             I+ + +        + I  DD     VGI+++F  +P+F GQTK KL +   +  V  
Sbjct: 295 AVIRSFMDTHDLVPHRLEIKGDDTREGLVGIVNLFHVDPQFQGQTKDKLNNPSVRSQVSG 354

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK--LRLPGKLADC 456
           ALR   + YL  +      +   V++ ++ R  RR     +   +  K  L+LPGKLADC
Sbjct: 355 ALRTELEQYLNDHSSTGEAIASRVVQAAKARRARRSASGGSSGRSGSKSRLQLPGKLADC 414

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S +     ELFIVEGDSAGGSAKQAR+R  QAVLPLRGK+LN   A  ++++NN+++ ++
Sbjct: 415 SSSTPSECELFIVEGDSAGGSAKQARDRETQAVLPLRGKVLNAEQATLDRVQNNKELSNI 474

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           VQALGC         DLRY KVI++ DAD DG HIA+LLLTFFY+ M  LIE   + +  
Sbjct: 475 VQALGCGIGDALDLSDLRYRKVILLMDADSDGHHIATLLLTFFYRYMRPLIEGGFVHIAQ 534

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDA 635
           PPL+RI  G ++ +A DE  K++IL+E +  G+   ++I RFKGLGEM+   L ET +  
Sbjct: 535 PPLYRIEAGKETHWALDEPDKEQILDEIRSDGRNPNVDIQRFKGLGEMMPDTLNETTLSP 594

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             R LL V I      +  T+ +I +LMG  +  RFKFI + A+  D++ 
Sbjct: 595 EGRRLLEVSIPDTERMV--TEQTITELMGRDSSARFKFIMQHAAEADELD 642


>gi|326796567|ref|YP_004314387.1| DNA topoisomerase IV, B subunit [Marinomonas mediterranea MMB-1]
 gi|326547331|gb|ADZ92551.1| DNA topoisomerase IV, B subunit [Marinomonas mediterranea MMB-1]
          Length = 632

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 245/645 (37%), Positives = 368/645 (57%), Gaps = 24/645 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y+A SI +L GLEPV+ RPGMY   T+    +HL  EVIDN++DE +AG+A+ IEV+L
Sbjct: 4   KEYNAGSIEVLSGLEPVQKRPGMY---TETTRPNHLGQEVIDNSVDEALAGHADKIEVTL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G L+V DNGRG+PV+ HP+    S +E+ILT LHAGGKF   +Y+ SGGLHGVG+SV
Sbjct: 61  YKDGSLSVEDNGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSGDSYQFSGGLHGVGVSV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS++L V V R    +   F+ G   S L +   V +   GT++ F+ DPK F    
Sbjct: 120 VNALSNQLDVWVKRDGKQYHIAFADGFKTSELAEVGTVGKKNTGTKVKFKADPKYFDSA- 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L   +   +       E       EE+++  GLK YL    +  
Sbjct: 179 KFSLSRLRHLLKAKAVLCSGLHVVFVDQSGSEETR-----EEWFYQDGLKDYLALANKGY 233

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
            L+  E F G           V+WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 234 ELLPEEPFIGSL---IETTQGVDWAVQWLPEGGELITESYVNLIPTAQGGTHVNGLRTGL 290

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              I+++ +      R + + ++D+      +LS  ++EP+F+GQTK +L S      + 
Sbjct: 291 LEAIREFCDFHNLLPRGVKLTAEDVWERCSYVLSAKLQEPQFSGQTKERLSSRQIVPFIT 350

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             ++D F  +L ++  +A K+ + +I  +++R+R    ++V RK   +   LPGKLADC+
Sbjct: 351 ATVKDAFSLWLNKHVEDAQKIADVIISSAQKRMR--ASKKVVRKKVTQGPALPGKLADCA 408

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
              +  +ELF+VEGDSAGGSAKQAR++  QA++PLRGKILN       ++  +Q+I D+ 
Sbjct: 409 GQDSSRSELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNSWEVDQSQVLASQEIHDIS 468

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG     +     LRY KV I+ DAD DG HIA+LL   F +    L+   H+F+  P
Sbjct: 469 VALGVDPGQEDL-SGLRYGKVCILADADSDGLHIATLLCALFVKHFPTLVNSGHVFVAMP 527

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDAN 636
           PL+RI  G +  YA D+E K  I+ + +   K GK+++ RFKGLGEM   QL+ET M  +
Sbjct: 528 PLYRIDIGKEVHYALDDEEKDIIIHKIEAEKKRGKLDVQRFKGLGEMNPPQLRETTMAPD 587

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
            R L+++ ++  L + +     ++K    +A +R  +++   +  
Sbjct: 588 TRRLIQLTMDDPLETGEVLDKLLSK---KRAADRKDWLETYGNLA 629


>gi|315225745|ref|ZP_07867533.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Parascardovia
           denticolens DSM 10105]
 gi|315119877|gb|EFT83009.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Parascardovia
           denticolens DSM 10105]
          Length = 701

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 235/668 (35%), Positives = 355/668 (53%), Gaps = 29/668 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           D+YDAS +R+LEGLE VR+RPGMYIG T  + LHHL  E++DN++DE +AGYA  IEV++
Sbjct: 40  DHYDASDLRVLEGLEAVRIRPGMYIGSTGPRGLHHLVYEIVDNSVDEALAGYATHIEVTI 99

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  + VVD+GRGIPV+  P    KS +E ++T LHAGGKF    Y +SGGLHGVGISV
Sbjct: 100 LEDNGIRVVDDGRGIPVDEVP-GEGKSGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISV 158

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK--KEKVRNKRGTRITFRPDPKIFGDK 219
           VNALS  + V V RQ   ++Q +    P++PL+K          GT +TF  DP IF D+
Sbjct: 159 VNALSTRVDVEVRRQGFHWTQTYIDQKPIAPLKKGQPMGEEETTGTSVTFWADPAIF-DQ 217

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI------------PEKEEFYFPG 267
             +D   L    Q  A+L+  +K   +  + + +                 +   + +  
Sbjct: 218 TDYDFETLRARFQQMAFLNKGLKISLTDLRSVDQAGDEVTGDGDNPLEELHQTVTYQYVN 277

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           G++ Y+   ++ +     E      + +      + E A+ W       + ++ NTI T 
Sbjct: 278 GIEDYVNYLVKTKKANPIEEDIIALDAEDPQQGISAEIAMQWTSAYSESVHTFANTISTT 337

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           EGGTHE G R ALT  + +YA        +  ++  DD+    V ++SV +  P+F GQT
Sbjct: 338 EGGTHEEGFRAALTSLVNRYAREKGILKDKDENLSGDDVREGLVAVISVKLTVPQFEGQT 397

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKT 442
           KTKL +  A+  V+  + +  + +   +P EA  +++  +E        ++ +    RK+
Sbjct: 398 KTKLGNAIAKTFVQRVMTERMNDWFDAHPNEAKAIIQKGMEAARARLAAKKARETTRRKS 457

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
                 +P KL DC  +     ELFIVEGDSAGGSA Q RN   QA+LPLRGKILN   A
Sbjct: 458 IFESAGMPDKLKDCQSSNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILNTERA 517

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
             +++  +  I  L+ A+G      +    +RY K+IIM DADVDGAHIA+L LT F++ 
Sbjct: 518 SFDRMMKSDTIESLITAVGGGYGEDFDINKVRYHKIIIMADADVDGAHIATLNLTLFFRY 577

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGK---GKIEISRFK 618
           +  +I   ++++  PPL+R+        + + +  + ++LEE +  G+       I R+K
Sbjct: 578 IRPMIYAGYVYVAMPPLYRLKWTKGPHDFVYTDAERDRVLEEGRSKGRQLPKGEGIQRYK 637

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           GLGEM   +L ET MD + R L ++ I           ++ + LMG   + R  FIQ  A
Sbjct: 638 GLGEMTYQELWETTMDPDHRILKQIHIED----AAQADETFSMLMGEDVEPRRLFIQRNA 693

Query: 679 SFIDDVGT 686
                +  
Sbjct: 694 HDARFIDA 701


>gi|330432984|gb|AEC18043.1| DNA topoisomerase IV subunit B [Gallibacterium anatis UMN179]
          Length = 636

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 261/651 (40%), Positives = 367/651 (56%), Gaps = 27/651 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           + + Y+A+ I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE +AGYA  IEV
Sbjct: 2   SENIYNANDITVLKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALAGYATKIEV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +  L V+DNGRG+PV+ HP     S +E+ILT LHAGGKF N  Y+ +GGLHGVGI
Sbjct: 59  ILYQDQSLEVIDNGRGMPVDIHP-VEKISGIELILTKLHAGGKFSNKNYQFAGGLHGVGI 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS  + V+V R   I+   F+ G  +  LE      R   GT + F P+ K F  
Sbjct: 118 SVVNALSARVDVSVKRNGEIYHIAFADGKKIEELEVVGTCGRRTTGTAVRFWPNAKYFDL 177

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F  +RL  + ++KA L   ++  +       E       E + +  GL  YL   ++
Sbjct: 178 A-KFSVSRLRHLLRAKAVLCPGLEIKFIDKVNQTE-------ERWCYQDGLSDYLLEAVD 229

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRV 336
               +  + F G+ +        V WA+ W  E   I   SY N I T  GGTH +GLR 
Sbjct: 230 GVVTLPEQPFIGEFKSDTE---AVNWALFWLPEGGNIIGESYVNLIPTPLGGTHVNGLRQ 286

Query: 337 ALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            L   ++++ E      R + + +DD+      ILS+ +++P+FAGQTK +L S  +   
Sbjct: 287 GLLDAMREFCEFRNLLPRGVKLTADDIWERCAYILSLKMQDPQFAGQTKERLSSRQSAVF 346

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           V   ++D F  +L QN  +A +L E  I  ++ RLR    ++V RK  +    LPGKLAD
Sbjct: 347 VSGVVKDSFSLWLNQNIQQAEQLAEMAIASAQRRLR--SAKKVVRKKLVSGPALPGKLAD 404

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C+Q     TELF+VEGDSAGGSAKQAR+R  QA+LPLRGKILN      +++  +Q+I D
Sbjct: 405 CTQQDLSRTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVAGDQVLGSQEIHD 464

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  ALG    +      LRY KV I+ DAD DG HIA+LL   F +    L+E+ H+++ 
Sbjct: 465 IAVALGIDPDTDDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVEEGHVYVA 523

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+RI  G +  YA DE  K+ ILE   K  KGKI + RFKGLGEM   QL+ET MD 
Sbjct: 524 MPPLYRIDLGKEVHYALDENEKEAILERL-KSKKGKINVQRFKGLGEMNPLQLRETTMDP 582

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKL-M---GTKADERFKFIQERASFID 682
           N R L+++    +  S  +   ++  L M     +AD+R  ++QE+    +
Sbjct: 583 NTRRLVQLVYQPNQGSDDEADHTLEMLDMLLAKKRADDRKNWLQEKGDHAE 633


>gi|164510808|emb|CAK18887.1| topoisomerase IV subunit B [Staphylococcus intermedius]
          Length = 637

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 227/629 (36%), Positives = 342/629 (54%), Gaps = 31/629 (4%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIG TD++ LHHL  EV+DN++DE++ GY N I V+++ +  +TV DNGRG+P   H  
Sbjct: 1   MYIGSTDKRGLHHLVYEVVDNSVDEILNGYGNEINVTINEDESITVADNGRGMPTGTH-- 58

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
              K T+E+I T LHAGGKF    Y+ SGGLHGVG SVVNALS+ L V + R   IF Q+
Sbjct: 59  RSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSESLTVEIHRDGEIFEQQ 118

Query: 184 FSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
           F+ G +P + L KK K +   GT +TF+PDP+IF     F+   L +  Q  A+L   +K
Sbjct: 119 FAHGGVPQTKLIKKGKTKR-TGTTVTFKPDPEIFKAATSFNFETLSERLQESAFLLQNLK 177

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
                 +   E+      E +++  G+K ++    E + ++        T  +     + 
Sbjct: 178 ITLEDRRAGKERS-----EVYHYEEGIKAFVSYVNEGKEVLHDVALFQGTSNEIEVDVSF 232

Query: 303 EWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISD 360
           ++   +   +  I S+ N + T +GGTHE G + A+TR   +YA        +  ++  +
Sbjct: 233 QYNDQY---SESIMSFVNNVRTKDGGTHEVGFKTAMTRVFNEYARRIGDLKAKDKNLEGN 289

Query: 361 DLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
           D+      I+SV I E   +F GQTK+KL + +A+  V+  + +    YL +    +  L
Sbjct: 290 DIREGLTAIISVRIPEHLLQFEGQTKSKLGTPEARSAVDAIVAEKLPFYLEEKGQLSKSL 349

Query: 419 LEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLADCSQNIAHGTELFIVEGDSAG 475
           ++  I+  + R   RK RE  R     K     L GKL           EL++VEGDSAG
Sbjct: 350 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAG 409

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           GSAK  R+R  QA+LPLRGK++N   A  E I  N++I  ++  +G    + +  ED  Y
Sbjct: 410 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGNDFNLEDSNY 469

Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG----TKSVYA 591
            ++IIMTDAD DGAHI  LLLTFF++ M  L+    +++  PPL+++ +G     K  YA
Sbjct: 470 NRIIIMTDADTDGAHIQVLLLTFFFKYMRPLVMAGRVYIALPPLYKLEKGKGKNKKIAYA 529

Query: 592 HDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651
             +E  +K+  E  K       + R+KGLGEM   QL ET M+   RTL+RV+I+ ++ S
Sbjct: 530 WTDEELEKLQREMGK----GFVLQRYKGLGEMNPDQLWETTMNPETRTLIRVQIDDEVRS 585

Query: 652 LKDTQDSINKLMGTKADERFKFIQERASF 680
            +     ++ LMG K   R ++I+    F
Sbjct: 586 SQR----VSTLMGDKVAPRREWIERHVQF 610


>gi|294786215|ref|ZP_06751469.1| DNA gyrase, B subunit [Parascardovia denticolens F0305]
 gi|294485048|gb|EFG32682.1| DNA gyrase, B subunit [Parascardovia denticolens F0305]
          Length = 704

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 235/668 (35%), Positives = 355/668 (53%), Gaps = 29/668 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           D+YDAS +R+LEGLE VR+RPGMYIG T  + LHHL  E++DN++DE +AGYA  IEV++
Sbjct: 43  DHYDASDLRVLEGLEAVRIRPGMYIGSTGPRGLHHLVYEIVDNSVDEALAGYATHIEVTI 102

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  + VVD+GRGIPV+  P    KS +E ++T LHAGGKF    Y +SGGLHGVGISV
Sbjct: 103 LEDNGIRVVDDGRGIPVDEVP-GEGKSGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISV 161

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK--KEKVRNKRGTRITFRPDPKIFGDK 219
           VNALS  + V V RQ   ++Q +    P++PL+K          GT +TF  DP IF D+
Sbjct: 162 VNALSTRVDVEVRRQGFHWTQTYIDQKPIAPLKKGQPMGEEETTGTSVTFWADPAIF-DQ 220

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI------------PEKEEFYFPG 267
             +D   L    Q  A+L+  +K   +  + + +                 +   + +  
Sbjct: 221 TDYDFETLRARFQQMAFLNKGLKISLTDLRSVDQAGDEVTGDGDNPLEELHQTVTYQYVN 280

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           G++ Y+   ++ +     E      + +      + E A+ W       + ++ NTI T 
Sbjct: 281 GIEDYVNYLVKTKKANPIEEDIIALDAEDPQQGISAEIAMQWTSAYSESVHTFANTISTT 340

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           EGGTHE G R ALT  + +YA        +  ++  DD+    V ++SV +  P+F GQT
Sbjct: 341 EGGTHEEGFRAALTSLVNRYAREKGILKDKDENLSGDDVREGLVAVISVKLTVPQFEGQT 400

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKT 442
           KTKL +  A+  V+  + +  + +   +P EA  +++  +E        ++ +    RK+
Sbjct: 401 KTKLGNAIAKTFVQRVMTERMNDWFDAHPNEAKAIIQKGMEAARARLAAKKARETTRRKS 460

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
                 +P KL DC  +     ELFIVEGDSAGGSA Q RN   QA+LPLRGKILN   A
Sbjct: 461 IFESAGMPDKLKDCQSSNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILNTERA 520

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
             +++  +  I  L+ A+G      +    +RY K+IIM DADVDGAHIA+L LT F++ 
Sbjct: 521 SFDRMMKSDTIESLITAVGGGYGEDFDINKVRYHKIIIMADADVDGAHIATLNLTLFFRY 580

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGK---GKIEISRFK 618
           +  +I   ++++  PPL+R+        + + +  + ++LEE +  G+       I R+K
Sbjct: 581 IRPMIYAGYVYVAMPPLYRLKWTKGPHDFVYTDAERDRVLEEGRSKGRQLPKGEGIQRYK 640

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           GLGEM   +L ET MD + R L ++ I           ++ + LMG   + R  FIQ  A
Sbjct: 641 GLGEMTYQELWETTMDPDHRILKQIHIED----AAQADETFSMLMGEDVEPRRLFIQRNA 696

Query: 679 SFIDDVGT 686
                +  
Sbjct: 697 HDARFIDA 704


>gi|170728515|ref|YP_001762541.1| DNA topoisomerase IV subunit B [Shewanella woodyi ATCC 51908]
 gi|169813862|gb|ACA88446.1| DNA topoisomerase IV, B subunit [Shewanella woodyi ATCC 51908]
          Length = 631

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 242/649 (37%), Positives = 363/649 (55%), Gaps = 26/649 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ Y + +I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AG+A  I+
Sbjct: 3   AMTNQYTSDAIEVLNGLDPVKRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHATKID 59

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V L  +  L V+D+GRG+P++ HP+      +E+ILT LHAGGKF N  Y+ SGGLHGVG
Sbjct: 60  VILHKDNSLEVIDDGRGMPIDIHPE-EGIPGVELILTKLHAGGKFSNDNYQFSGGLHGVG 118

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFG 217
           ISVVNALS+ + +TV R   ++   F  G  +  L +     R   GTR+ F P P  F 
Sbjct: 119 ISVVNALSNRVEITVRRNGLVYDMAFEHGDKVEDLTETGTCGRRNTGTRVHFWPTPSYFD 178

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F   +L  + ++KA L   +K  +             E  E+++  GL  YL + +
Sbjct: 179 SAN-FSIPKLTYLLRAKAVLCPGLKIKFVNK-------QTDETTEWHYESGLTDYLISSV 230

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLR 335
           ++  ++  + F G  +     +  V+WAI W  E  +    SY N I T  GGTH +G R
Sbjct: 231 KDSLMLPEDPFVGSMKGN---QEAVDWAITWLPEGGDYLNESYVNLIPTPLGGTHVNGFR 287

Query: 336 VALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
             L   ++++ E      R I +  +D+   +  ILSV +++P+FAGQTK KL S  +  
Sbjct: 288 QGLLDSMREFCEFRNLIPRGIKLTPEDIWDRSSFILSVKMQDPQFAGQTKEKLSSRQSAA 347

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454
            V   +RD F  +L  +  +A  L E  I  +++RL+    ++V RK       LPGKL 
Sbjct: 348 FVSGIVRDAFSLWLNTHTDQAAALAEMCINNAQKRLK--SAKKVARKKVTSGPALPGKLT 405

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS       ELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     + ++  +Q++ 
Sbjct: 406 DCSGQDPMRGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASQEVH 465

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           D+  A+GC    +    +LRY K+ I+ DAD DG HIA+LL   F +    L+E  H+++
Sbjct: 466 DISVAIGCDPDCEDI-SELRYGKICILADADSDGLHIATLLCALFMKHYKVLVEHGHVYV 524

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAM 633
             PPLFR+  G +  YA DE  K  IL+    +  KGK++++RFKGLGEM   QL+ET M
Sbjct: 525 AMPPLFRVDVGKEVFYALDEAEKDGILDRITAEKKKGKVQVTRFKGLGEMNPLQLRETTM 584

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           D N R L+++ I+   +++         L   ++ +R  +++ +    D
Sbjct: 585 DPNTRRLVQLTIDDVEDTMAVMDML---LAKKRSGDRKTWLETKGDLAD 630


>gi|239994107|ref|ZP_04714631.1| DNA topoisomerase IV subunit B [Alteromonas macleodii ATCC 27126]
          Length = 631

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 249/645 (38%), Positives = 359/645 (55%), Gaps = 21/645 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S+ Y++ +I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AG+A+ I+V 
Sbjct: 2   SNQYNSDAIEVLNGLDPVKRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHASNIKVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+    S +E+IL  LHAGGKF N  Y  SGGLHGVGIS
Sbjct: 59  LHEDQSLEVIDDGRGMPVDIHPE-EGISGVELILCKLHAGGKFSNKNYAFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + VT+ R + ++   F  G  +  L+  +   +   GTR+ F PDP+ F   
Sbjct: 118 VVNALSTRVEVTIRRDSNVYQIAFENGDKVEDLQVIDTCGKRNTGTRVHFWPDPQYFDSA 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F A+RL+   ++KA LS  ++  +       +     E +E+Y+  GLK YL   +E 
Sbjct: 178 -KFSASRLVHNLRAKAVLSPGLRIRF-------DNKITKESQEWYYEDGLKDYLYQAVEE 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
              + S+     T    T              +    SY N I T +GGTH +GLR  L 
Sbjct: 230 FETLPSDTPFVGTFSGNTEAADWAVMWLPEGGDLVTESYVNLIPTAQGGTHVNGLRQGLL 289

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R + +  DD+      ILS  +++P+FAGQTK +L S  A   V  
Sbjct: 290 ESMREFCEFRNLMPRGVKLSPDDIWDRCAYILSTKMQDPQFAGQTKERLSSRQASAFVSG 349

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L Q+   A  L E  I  ++ RLR+   ++V RK   +   LPGKL DCS 
Sbjct: 350 VVKDAFSLWLNQHTEIAEALAEMCINNAQRRLRQT--KKVARKKVTQGPALPGKLTDCSS 407

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +ELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     S ++  +Q+I D+  
Sbjct: 408 QDISYSELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNSWEVDSSQVLASQEIHDISV 467

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG    S      LRY K+ I+ DAD DG HIA+LL   F +    L+EQ H+++  PP
Sbjct: 468 ALGIDPDSTDL-SGLRYGKICILADADSDGLHIATLLCALFVRHFRTLVEQGHVYVAMPP 526

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANK 637
           LFRI  G +  YA DE  KQ IL+  +   K GK+ + RFKGLGEM   QL+ET M  N 
Sbjct: 527 LFRIDVGKEVYYALDEGEKQGILDRIEAEKKRGKVNVQRFKGLGEMNPLQLRETTMGPNT 586

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           R L+++ I      ++        L   ++ +R  +++ + +  +
Sbjct: 587 RRLVQLTIEDAEEMMELMDML---LAKKRSGDRKTWLESKGNMAE 628


>gi|220912381|ref|YP_002487690.1| DNA topoisomerase IV subunit B [Arthrobacter chlorophenolicus A6]
 gi|219859259|gb|ACL39601.1| DNA topoisomerase (ATP-hydrolyzing) [Arthrobacter chlorophenolicus
           A6]
          Length = 702

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 238/700 (34%), Positives = 343/700 (49%), Gaps = 61/700 (8%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + S  Y A  + +LEGLE VR RPGMYIG TD + L H   E+IDN++DE +AG+ + I 
Sbjct: 2   APSSEYTARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALAGFGHDIR 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           + L  +  + + D+GRGIP++  PK    + +E++ T LHAGGKF   +Y  SGGLHGVG
Sbjct: 62  IILHADNSVEIHDDGRGIPIDKEPK-TGLTGVEVVFTKLHAGGKFGGGSYTASGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------------------- 199
            SVVNALS  L V V R    +   F RG P    +   K                    
Sbjct: 121 ASVVNALSSRLDVEVDRGGKTYRMSFRRGEPGRFKDVGSKTDPAAAFTPFVDDSVLDIVG 180

Query: 200 ---RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
              R   GTRI +  D +IF   A F    L    +  ++L   +K     ++ +    G
Sbjct: 181 KAKRGVTGTRIRYWADRQIFTPDAKFSYDELAARARQTSFLVPGLKLTVRDERRVPGTAG 240

Query: 257 I--PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT----------------H 298
              P +E F+  GG+  ++     +  +       G  + K T                 
Sbjct: 241 EAGPHEEVFHHDGGISEFVDFLAADPPVTDVWRLHGSGKFKETVPVLDERGHSQLAEVER 300

Query: 299 RGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK---RA 354
              V+ A+ W       + S+ N I T +GGTH+SG   AL +  +K  E    K     
Sbjct: 301 DCEVDVALRWGIGYDSTVRSFVNIISTPKGGTHQSGFEQALVKTFRKAVETNARKLKAGN 360

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RTVENALRDPFDHYLVQ 410
             I  DD+      +L+V + EP+F GQTK  L +   +    + VE  +    +     
Sbjct: 361 DKIEKDDIFAGLTAVLTVRLAEPQFEGQTKEILGTSAVRAIVAKVVEREIVAKLNSANRN 420

Query: 411 NPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           +  ++  LLE ++   + R+  R  +E   RK A+    +P KLADC  +    +ELFIV
Sbjct: 421 DKAQSALLLEKIVSEMKSRISARVHKETQRRKNALETSSMPTKLADCRTDDVERSELFIV 480

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           EGDSA G+AK AR+   QA+LP+RGKILNV  A    + +N +   L+Q +G  +   + 
Sbjct: 481 EGDSALGTAKLARSSDFQALLPIRGKILNVQKASVGDMLSNAECAALIQVVGAGSGRSFD 540

Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI------T 583
               RY KVI+MTDADVDGAHI +LLLT F++ M  +IE+  +F   PPL R+       
Sbjct: 541 ISAARYGKVILMTDADVDGAHIRTLLLTLFFRYMRPMIEEGRVFAAVPPLHRVEVVNAGQ 600

Query: 584 QGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRTLLR 642
           +  + +Y + E     +L    K GK  K  I R+KGLGEM A QL ET MD   R L +
Sbjct: 601 KANEMIYTYSEAELHVLLARLAKEGKRYKEPIQRYKGLGEMDAEQLAETTMDPRHRMLRK 660

Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           V I      L++ + + + LMG+    R  FI   A+ +D
Sbjct: 661 VGI----AELEEAEKTFDLLMGSDVSPRKDFIIAGAASLD 696


>gi|192360165|ref|YP_001983359.1| DNA topoisomerase IV subunit B [Cellvibrio japonicus Ueda107]
 gi|190686330|gb|ACE84008.1| DNA topoisomerase IV, B subunit [Cellvibrio japonicus Ueda107]
          Length = 629

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 247/645 (38%), Positives = 362/645 (56%), Gaps = 26/645 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY A  I +L GL+PV+ RPGMY   T+    +HL  E+IDN++DE +AG+A  IEV L 
Sbjct: 3   NYSAEDIEVLTGLDPVKKRPGMY---TETTRPNHLAQEIIDNSVDEALAGHAKSIEVILH 59

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV D+GRG+PV+ HP+   K  +E+IL TLHAGGKF N  Y+ SGGLHGVG+SVV
Sbjct: 60  KDNSVTVADDGRGMPVDIHPEQ-GKPGVEVILCTLHAGGKFSNKNYQFSGGLHGVGVSVV 118

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221
           NALS++L VT+ R   ++   F+ G   + L+  +   + + GT + F P+P ++ D   
Sbjct: 119 NALSEQLEVTIKRDGNVYRMGFANGDKATDLDIIDTCPKRQTGTSVRFLPNP-VYFDSPK 177

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F   R+  + ++KA L   +   +  +          EK+ +Y+  GLK YL    +   
Sbjct: 178 FSVTRMRHVLRAKAVLCPGLTVSFLDE-------ATGEKDVWYYEDGLKDYLAGATQEWI 230

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALT 339
            +  + F G  + +      + WA+ W  E  E    SY N I T +GGTH +GLR  L 
Sbjct: 231 SLPEQPFVGDFKAETE---AISWAVQWLPEGGELVQESYVNLIPTAQGGTHVNGLRTGLM 287

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++ Y E      R I +  +DL  +   +LS    +P+F+GQTK +L S +A   V  
Sbjct: 288 DAMRDYCEFRNLIPRGIKLAPEDLWNNCCFVLSYKHYDPQFSGQTKERLTSREAAAFVSG 347

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
             +D F  +L Q+  E  KL E+ I  +++R+R    ++V RK   +   LPGKLADCS 
Sbjct: 348 IAKDAFALWLNQHTEEGDKLAEFCISNAQKRVR--SGKKVARKKVTQGPALPGKLADCSS 405

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +ELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     S +I  +Q++ D+  
Sbjct: 406 GDTSRSELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDSAEILASQEVHDISV 465

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+G    S+    +LRY K+ I+ DAD DG HIA+LL   F +    L+   H+F+  PP
Sbjct: 466 AIGMDPGSEDL-SELRYNKICILADADSDGLHIATLLCALFVKHFPVLVRNGHVFVAMPP 524

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANK 637
           L+RI  G    YA DE  K  IL       K GK+ + RFKGLGEM   QL+ET M  + 
Sbjct: 525 LYRIDIGKDVYYALDESEKNGILNRIAAENKRGKVNVQRFKGLGEMNPLQLRETTMAPDT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           R L+++ I     +L+        L   +A++R  +++E+ +  +
Sbjct: 585 RRLVQLTIEDVDGTLQIMDM---MLAKKRANDRKTWLEEKGNLAE 626


>gi|59712835|ref|YP_205611.1| DNA topoisomerase IV subunit B [Vibrio fischeri ES114]
 gi|59480936|gb|AAW86723.1| DNA topoisomerase IV, subunit B [Vibrio fischeri ES114]
          Length = 626

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 255/647 (39%), Positives = 359/647 (55%), Gaps = 28/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  +EV 
Sbjct: 2   TEQYNAGAIEVLNGLEPVRRRPGMY---TDTVRPNHLGQEVIDNSVDEALAGHAKKVEVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP     S +E+IL  LHAGGKF    YE SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHP-VEKVSGVELILCKLHAGGKFSGKNYEFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + VTV R   ++   F  G  +S L       R  RGT + F PD   F   
Sbjct: 118 VVNALSKRVEVTVRRDGQVYEIAFENGDKVSDLTVTGTCGRRNRGTSVHFWPDASYFDSA 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F   RL+   ++KA L   ++  +       E         + +  GLK YL   +  
Sbjct: 178 -KFSVTRLINNLKAKAVLCPGLEIVFKDKVNDKEHN-------WCYEDGLKDYLLEGVTG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
            +L+    FTG     G      +WA+ W  E  E    SY N I T +GGTH +G+R  
Sbjct: 230 FTLLPEIPFTGAFSGTGE---AADWAVTWLPEGGELVAESYVNLIPTAQGGTHVNGMRQG 286

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + +DD+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEFRNLVPRGVKLTADDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L + P  A +L E  I  +  R+R    ++V RK       LPGKL DC
Sbjct: 347 SGVVKDAFSLWLNEKPQIAEQLAEACIANAHRRMR--AAKKVVRKKIASGPALPGKLTDC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      TELF+VEGDSAGGSAKQAR+R  QAV+PLRGKILN     ++++  +Q++ D+
Sbjct: 405 SVQDLARTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             ALG    S      LRY KV I+ DAD DG HIA+LL   + +    L++  H+++  
Sbjct: 465 SVALGIDPDSDDL-SGLRYGKVCILADADSDGLHIATLLCALYLKHFKALVQAGHVYVAM 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA DEE K+ +L+    + + KI + RFKGLGEM   QL+ET MD N
Sbjct: 524 PPLYRIDCGKEVFYALDEEEKEGVLDRLS-NKRAKINVQRFKGLGEMNPLQLRETTMDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ I+ D    + T + ++ L+G K AD+R  ++Q      +
Sbjct: 583 TRRLVQLTIDDD----EQTDEMMDMLLGKKRADDRRSWLQSNGDQAE 625


>gi|123443845|ref|YP_001007816.1| DNA topoisomerase IV subunit B [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090806|emb|CAL13688.1| topoisomerase IV subunit B [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 631

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 247/648 (38%), Positives = 360/648 (55%), Gaps = 26/648 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
              +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A+ I+V
Sbjct: 2   TESSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAHRIDV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGI
Sbjct: 59  ILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS  + VTV R + I+S  F  G  +  L+      +   GT + F PD   F  
Sbjct: 118 SVVNALSKRVEVTVRRDSQIYSIAFENGDKVQELQVIGTCGKRNTGTSVHFWPDVSFFDS 177

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F  +RL  + ++KA L   V+  +       E       + + +  GL  YL   + 
Sbjct: 178 PR-FSVSRLSHLLKAKAVLCPGVEIVFKDQVNNTE-------QRWCYADGLTDYLMEAVN 229

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336
               +    F G           ++WA+ W  E  E    SY N I T +GGTH +GLR 
Sbjct: 230 GLITLPEVPFVGSFAGDTE---AIDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 286

Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            L   ++++ E      R + + +DD+      +LSV +++P+FAGQTK +L S      
Sbjct: 287 GLLDAMREFCEYRNILPRGVKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 346

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           V   ++D F  +L QN   A +L E  I  ++ R+R    ++V RK       LPGKLAD
Sbjct: 347 VSGVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C+      TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D
Sbjct: 405 CTSQDLSMTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 464

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  A+G    S+     LRY K+ I+ DAD DG HIA+LL   F +    L+   H+++ 
Sbjct: 465 ISVAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVRNGHVYVA 523

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+RI  G +  YA DEE K  +L++ K+  +GK  + RFKGLGEM   QL+ET +D 
Sbjct: 524 MPPLYRIDLGKEVFYALDEEEKAGVLDQLKRK-RGKPNVQRFKGLGEMNPLQLRETTLDP 582

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           N R L+++ I      +  T   ++ L+  K +++R  ++QE+    +
Sbjct: 583 NTRRLVQLTIGD--EDIDKTMAMMDMLLAKKRSEDRRNWLQEKGDTAE 628


>gi|256823223|ref|YP_003147186.1| DNA topoisomerase IV subunit B [Kangiella koreensis DSM 16069]
 gi|256796762|gb|ACV27418.1| DNA topoisomerase IV, B subunit [Kangiella koreensis DSM 16069]
          Length = 629

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 249/648 (38%), Positives = 364/648 (56%), Gaps = 26/648 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A++ Y A SI +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AG+A  I+V
Sbjct: 2   ANNQYTAESIEVLSGLDPVKKRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHAKTIKV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +  L V D+GRG+PV+ HP+      +E+I++ LHAGGKF N  Y+ SGGLHGVGI
Sbjct: 59  TLHKDSSLEVEDDGRGMPVDIHPE-EGIPGVELIMSKLHAGGKFSNKNYQFSGGLHGVGI 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS  + VTV R    +   F  G  +  LE   +V +   GT + F PD K F  
Sbjct: 118 SVVNALSKRVEVTVKRDGNQYFMAFEDGFKVKDLEVVAEVGKRNTGTSVKFWPDSKYFDS 177

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F  +RL  + ++KA L   +K  +       +     E++E+ +  GL  YL  +  
Sbjct: 178 D-KFSISRLKHLLKAKAILCPGLKVVF-------DNKAAGEQDEWLYEDGLTAYLLEQAG 229

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRV 336
               +  E FTG  + +      V+WA  W  E  E    SY N I T +GGTH +GLR 
Sbjct: 230 GFERLPEEPFTGSLQGEAE---AVDWAFMWLPEGGECLAESYVNLIPTPQGGTHVNGLRN 286

Query: 337 ALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            L   ++++ E      R + + ++D+      +LSV + +P+F+GQTK +L S      
Sbjct: 287 GLLDAMREFCEFRNLLPRGVKLSAEDVWDRISYVLSVKLDDPQFSGQTKERLSSRQCATF 346

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           V   ++D F  +L QNP+    L E  I  + +R+R    +++ RK   +   LPGKLAD
Sbjct: 347 VAGVVKDAFSLWLNQNPVIGDALAERAISNAHKRMR--ASKKIVRKKVTQGPALPGKLAD 404

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C+   A  +ELF+VEGDSAGGSAKQAR++  QA++PLRGKILN     S +I  +Q++ D
Sbjct: 405 CAGTDAMSSELFLVEGDSAGGSAKQARDKEYQAIMPLRGKILNTWEVDSNQILASQEVHD 464

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  A+G    S      LRY KV I+ DAD DG HIA+LL   F +    L+   H+F+ 
Sbjct: 465 ISVAIGLDPSSDDL-SKLRYGKVCILADADSDGLHIATLLCALFVRHFRPLVRAGHVFVA 523

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMD 634
            PPL+RI  G +  YA DE+ KQ +L+  K   K GKI++ RFKGLGEM   QL+ET M 
Sbjct: 524 MPPLYRIDVGKEVFYALDEDEKQGLLDRIKAENKRGKIQVQRFKGLGEMNPKQLRETTMA 583

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
              R L+++ +  D  +       ++K    +A +R ++++ + +  +
Sbjct: 584 RETRRLVQLTLGGDGEAEHIMDMLLSK---KRASDRKEWLELKGNKAE 628


>gi|238796970|ref|ZP_04640474.1| DNA topoisomerase 4 subunit B [Yersinia mollaretii ATCC 43969]
 gi|238719230|gb|EEQ11042.1| DNA topoisomerase 4 subunit B [Yersinia mollaretii ATCC 43969]
          Length = 631

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 249/648 (38%), Positives = 360/648 (55%), Gaps = 26/648 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
              +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  I+V
Sbjct: 2   TESSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARRIDV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGI
Sbjct: 59  ILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS  + VTV R   I+S  F  G  +  L+      +   GT + F PD   F  
Sbjct: 118 SVVNALSKRVEVTVRRDGQIYSIAFENGDKVQDLQVIGTCGKRNTGTSVHFWPDVSFFDS 177

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F  +RL  + ++KA L   V+  +       E       + + +  GL  YL   ++
Sbjct: 178 PR-FSVSRLSHLLKAKAVLCPGVEIVFKDLVNNTE-------QRWCYADGLTDYLMEAVD 229

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336
               +  + F G           ++WA+ W  E  E    SY N I T +GGTH +GLR 
Sbjct: 230 GLITLPEKAFVGSFAGDTE---AIDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 286

Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            L   ++ + E      R + + +DD+      +LSV +++P+FAGQTK +L S      
Sbjct: 287 GLLDAMRDFCEYRNILPRGVKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 346

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           V   ++D F  +L QN   A +L E  I  ++ R+R    ++V RK       LPGKLAD
Sbjct: 347 VSGVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C+      TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D
Sbjct: 405 CTSQDLSMTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 464

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  A+G    S+     LRY K+ I+ DAD DG HIA+LL   F +    L+   H+++ 
Sbjct: 465 ISVAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVRNGHVYVA 523

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+RI  G +  YA DEE K  +LE+ K+  +GK  + RFKGLGEM   QL+ET +D 
Sbjct: 524 MPPLYRIDLGKEVFYALDEEEKAGVLEQLKRK-RGKPNVQRFKGLGEMNPLQLRETTLDP 582

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           N R L+++ I  D   +  T   ++ L+  K +++R  ++QE+    +
Sbjct: 583 NTRRLVQLTIGDD--DIDKTMAMMDMLLAKKRSEDRRNWLQEKGDTAE 628


>gi|120600194|ref|YP_964768.1| DNA topoisomerase IV subunit B [Shewanella sp. W3-18-1]
 gi|146291878|ref|YP_001182302.1| DNA topoisomerase IV subunit B [Shewanella putrefaciens CN-32]
 gi|120560287|gb|ABM26214.1| DNA topoisomerase IV subunit B [Shewanella sp. W3-18-1]
 gi|145563568|gb|ABP74503.1| DNA topoisomerase IV subunit B [Shewanella putrefaciens CN-32]
 gi|319425113|gb|ADV53187.1| DNA topoisomerase IV, B subunit [Shewanella putrefaciens 200]
          Length = 628

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 246/645 (38%), Positives = 356/645 (55%), Gaps = 24/645 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y + +I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AG+A  IEV 
Sbjct: 2   TNQYTSDAIEVLNGLDPVKRRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHATKIEVV 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V D+GRG+PV+ HP+      +E+ILT LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHLDNSLEVTDDGRGMPVDIHPE-EGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + VTV R   ++   F  G  +  L+      R   GTR+ F PD   F   
Sbjct: 118 VVNALSRRVEVTVRRDGQVYDIAFEHGFKVEELKVTGTCGRRNTGTRVHFWPDASYFDSA 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  ++L+ + ++KA L   ++  ++            E  E+++  GL  YL+  + +
Sbjct: 178 N-FSNSKLIYLLRAKAVLCPGLRIKFTNK-------QTNEVHEWFYESGLTDYLKAAVGD 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
             ++  E F G  + K                     SY N I T  GGTH +G R  L 
Sbjct: 230 NVMLPEEPFVGSFKGK-IEAADWAITWLPEGGESINESYVNLIPTPLGGTHVNGFRQGLL 288

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R I +  +D+   A  ILSV +++P+FAGQTK KL S      V  
Sbjct: 289 ESMREFCEFRNLIPRGIKLSPEDIWDRAAFILSVKMQDPQFAGQTKEKLSSRQCSAFVSG 348

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            +RD F  +L  N   A  L E  I  ++ RL+  K  +V RK       LPGKL DCS 
Sbjct: 349 IVRDAFSLWLNSNTELAESLAELCINNAQRRLKAAK--KVARKKVTSGPALPGKLTDCSG 406

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 ELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     + ++  +Q++ D+  
Sbjct: 407 QDPMRGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASQEVHDISV 466

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+GC         +LRY K+ I+ DAD DG HIA+LL   F +    L+EQ H+++  PP
Sbjct: 467 AIGCDPDCNDI-SELRYGKICILADADSDGLHIATLLCALFLKHYRILVEQGHVYIAMPP 525

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           LFRI  G    YA DE  K+ IL+    ++ KGK++++RFKGLGEM   QL+ET MD N 
Sbjct: 526 LFRIDIGKDVYYALDEAEKEGILDRISAENKKGKVQVTRFKGLGEMNPLQLRETTMDPNT 585

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFI 681
           R L+++ I+     +++T   ++ L+  K + +R  +++++    
Sbjct: 586 RRLVQLTIDD----VEETDSLMDMLLAKKRSPDRKSWLEDKGDMA 626


>gi|153873771|ref|ZP_02002242.1| Gram negative topoisomerase IV, subunit B [Beggiatoa sp. PS]
 gi|152069763|gb|EDN67758.1| Gram negative topoisomerase IV, subunit B [Beggiatoa sp. PS]
          Length = 632

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 261/650 (40%), Positives = 375/650 (57%), Gaps = 27/650 (4%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A  N  A+ +YDA+ I +L GLEPVR RPGMY   TD    +HL  EV+DN++DE IAGY
Sbjct: 2   ARKNYDAAKSYDAADIEVLTGLEPVRKRPGMY---TDTTRPNHLAQEVVDNSVDEAIAGY 58

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           AN I+V L  +G L+V DNGRG+PV+ HP+    S +E+ILT LHAGGKF N  Y+ SGG
Sbjct: 59  ANQIDVVLHADGSLSVRDNGRGMPVDKHPE-EGISGVEVILTRLHAGGKFSNKNYQFSGG 117

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPD 212
           LHGVG+SVVNALS  L V + R + ++   F+ G   S L     V +   GT + F  +
Sbjct: 118 LHGVGVSVVNALSSHLEVNIKRDSQLYQMSFADGEKTSELRVIGNVGKRNTGTMLRFWAN 177

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           PK F     F   RL+ + ++KA L   ++  +  +          EK ++Y+  GL TY
Sbjct: 178 PKYFDSPR-FLVPRLMHVLRAKAVLCAGLRLTFEDE-------NTGEKFQWYYKDGLTTY 229

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHE 331
           L   L +   +  E F G  E        V++A+ W  E      SY N I T +GGTH 
Sbjct: 230 LLDNLGDVDSLPEEPFVGHFEG---TTEAVDYALMWLSEGELLTESYVNLIPTTQGGTHV 286

Query: 332 SGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           +GLR  L   ++++ +      R + +  +D+      ILSV + EP+F+GQTK +L S 
Sbjct: 287 NGLRSGLLDAMREFCDYRNLLPRGVKLAPEDVWERCTYILSVKLEEPQFSGQTKERLSSR 346

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
                V   +RD F  +L Q+     K+ E VI  +++RLR    ++V RK A     LP
Sbjct: 347 ACATFVSGVVRDAFSLWLNQHVEIGEKIAELVISHAQKRLRAD--KKVVRKKATNGPTLP 404

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS      TELF+VEGDSAGGS +QAR+R+ QA++PLRGKILN     + ++  +
Sbjct: 405 GKLADCSLQDVSRTELFLVEGDSAGGSCRQARDRTFQAIMPLRGKILNTWEVDTSQVLAS 464

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           Q++ D+  ALG         E+LRY KV I+ DAD DGAHIA+LL   F +    L+EQ 
Sbjct: 465 QEVHDIAVALGIDPGIDNL-EELRYGKVCILADADSDGAHIATLLCALFVKHFPTLVEQG 523

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK-IEISRFKGLGEMLASQLK 629
           H+++ +PPL+RI  G    YA +++ KQ IL+      K   + + RFKGLGEM   QL+
Sbjct: 524 HIYIATPPLYRIDVGNTVYYALNDDEKQGILDRIAAEKKRGTVNVQRFKGLGEMNPLQLR 583

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERA 678
           ET M  + R L+++ +N+    +++T++ +N L+  K A +R  +++ +A
Sbjct: 584 ETTMSPDTRRLIQLTLNE----VEETENMMNMLLSKKRAHDRKVWLEIKA 629


>gi|255073667|ref|XP_002500508.1| predicted protein [Micromonas sp. RCC299]
 gi|226515771|gb|ACO61766.1| predicted protein [Micromonas sp. RCC299]
          Length = 703

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 255/686 (37%), Positives = 371/686 (54%), Gaps = 24/686 (3%)

Query: 15  QSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKAL 74
             + ++  +  +     + A A    SD Y ASSI++L+GLEPVR RPGMYIG T  K L
Sbjct: 26  APRDNTGDIIAAKAAAKAAAAAATGGSDAYGASSIQVLKGLEPVRKRPGMYIGNTSTKGL 85

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           HH+  EV+DN +DEV AG+A+LI V+++ +G + V D+GRGIP + HP     S+LE +L
Sbjct: 86  HHMVWEVLDNGVDEVQAGHASLITVTVEADGSVAVEDDGRGIPTDVHP-ATGTSSLETVL 144

Query: 135 TTLHAGGKFDNST--YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
           T LHAGGKF      Y +SGGLHGVGISVVNALSD   VTV R +  + Q FSRG  L+P
Sbjct: 145 TVLHAGGKFGGDESGYHVSGGLHGVGISVVNALSDSTEVTVWRGDREYRQSFSRGAALAP 204

Query: 193 LEKKE----KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
           + +       V  K+GTR+ F+PDP IF ++  FD   +L   +  A+L+       S D
Sbjct: 205 MTEGSQDVANVGKKKGTRVRFKPDPSIFKERQDFDPNIILARMKELAFLNSTATDEASMD 264

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +   +K     +E   FPGGLK Y+    E    +     T + E  G            
Sbjct: 265 EGDVKKTEEYYEEVLSFPGGLKDYVVDLNEGAEPLHEP-ITFRAEVDGVQVEGA-LQWTK 322

Query: 309 CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISA 366
                 +  Y N+I T +GGTH  GL+ +LTR +   A   +  +    ++  + +    
Sbjct: 323 EAYTDTLLGYANSIRTSDGGTHLDGLKQSLTRAVNTQARKAKLLKEADANLGGEHIREGL 382

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             +++V++ +PEF GQTKT+L + + ++ VE+ + +    +L   P     +     +  
Sbjct: 383 SAVIAVWVPQPEFEGQTKTRLGNPEVRKVVESVIGEQVSEHLEFYPNTLGSIFSKASQAQ 442

Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
           +     ++ RE V RK+ +R   LPGKL+DCS +    TE+F+VEGDSAGGSAKQ R+R 
Sbjct: 443 KAAEAAKRARELVRRKSVLRSGSLPGKLSDCSVSDPESTEIFLVEGDSAGGSAKQGRDRR 502

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDA 544
            QAVLPLRGKILNV       +  N +I  +V ALG   + +  +E  LRY K++I+TDA
Sbjct: 503 FQAVLPLRGKILNVERKDEASMYKNTEISSMVTALGLGLKGEPFDESQLRYSKIVILTDA 562

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT-----QGTKSVYAHDEEHKQK 599
           DVDGAHI +LLLTF ++    L EQ  +++  PPL+++      +     Y +DE   Q 
Sbjct: 563 DVDGAHIRTLLLTFLFRYQRGLFEQGKVYVAVPPLYKVESGRAGKNNPPTYCYDEAQLQA 622

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
            L    +       I RFKGLGEM+  QL  T ++   R L R+ ++           + 
Sbjct: 623 HLATLPEGASR--SIQRFKGLGEMMPEQLWSTTLNPETRLLKRLTVDD----AAMANKTF 676

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
             LM  K   R +FI+     ++D+ 
Sbjct: 677 QLLMSDKVAPRREFIETEGPKLEDID 702


>gi|162452728|ref|YP_001615095.1| DNA gyrase subunit B [Sorangium cellulosum 'So ce 56']
 gi|161163310|emb|CAN94615.1| DNA gyrase subunit B [Sorangium cellulosum 'So ce 56']
          Length = 645

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 262/658 (39%), Positives = 381/658 (57%), Gaps = 24/658 (3%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
            + +    ++   Y A+ I +LEGLEPVR RP MYIGGTD +  HHL  E++DNA+DE I
Sbjct: 3   ATNSPVRAASGARYTAADIEVLEGLEPVRKRPAMYIGGTDARGYHHLLWEIVDNAVDEAI 62

Query: 91  AGYANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
            G+A  IEV+LD +    TV D+GRGIPV+ HP++  +  LE+I  TLHAGGKF +  Y+
Sbjct: 63  NGHAKRIEVTLDADLQGATVTDDGRGIPVDVHPRY-KRPALELIFCTLHAGGKFASDNYK 121

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG SVVNALS+ + V V R  +   Q FSRG P S L+K      K GT I F
Sbjct: 122 VSGGLHGVGSSVVNALSELVEVRVLRDGSEHQQTFSRGAPTSKLKK-GAPTRKHGTTIHF 180

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           RPDP+IFG    FD   + +  ++KAYL G ++  +             E  E   P G+
Sbjct: 181 RPDPEIFGQGRRFDPETIRERLEAKAYLHGGLEIAFRD-------LSSGESIELLHPNGI 233

Query: 270 KTYLQT--KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEG 327
             +L        + +    IF    E +      ++W  +    +  + SY N I T  G
Sbjct: 234 ADFLPKLVAQRGKPVTHPSIFYVAREGEIRLEAALQWTES---TDEYVKSYVNGIPTHAG 290

Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           G HESG   A+ + ++ + +  +   + +++ +DD+    VG+LS++I++P+F GQTK +
Sbjct: 291 GAHESGFSGAIVKAVRAFMDAKKVQPKGVTLTADDIREGIVGVLSIYIQDPQFQGQTKDR 350

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR--KQREVNRKTAI 444
           L + +A   VE  +R   + +++ N      ++   I  +  R  RR   Q+ + +    
Sbjct: 351 LNNAEAGPAVEGMVRPALEQWMLHNGTAGESIVARAILAARAREARREATQQVLRKTPVS 410

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
            +L LPGKLADC+      +ELFIVEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A +
Sbjct: 411 HRLNLPGKLADCASTDPSESELFIVEGDSAGGSAKQGRDRRTQAILPLRGKVLNAEQAST 470

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
            K+  N+++ D+V ALGC     +    LRY ++ ++ DAD DG HIA+LLLTFFY+ + 
Sbjct: 471 SKVLGNKELQDIVSALGCGFGKDFDASKLRYGRIFLLMDADSDGQHIATLLLTFFYRHLP 530

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
            L+   H+FL  PPL+RI  G ++ +A D+  + ++L +  K  K   +ISRFKGLGEM 
Sbjct: 531 GLLRGGHVFLAQPPLYRIDVGKETHWALDDAERDRVLAKLPKTAKA--DISRFKGLGEMP 588

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           A  LK T +D  +R  LR+ I  ++    +T   +N+LMG  A  RF+FI ERA   +
Sbjct: 589 AEDLKATTLDIRRRRALRIVIEGEI----ETDRILNELMGKDAQARFRFIMERAPNAE 642


>gi|229829024|ref|ZP_04455093.1| hypothetical protein GCWU000342_01109 [Shuttleworthia satelles DSM
           14600]
 gi|229792187|gb|EEP28301.1| hypothetical protein GCWU000342_01109 [Shuttleworthia satelles DSM
           14600]
          Length = 640

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 241/660 (36%), Positives = 344/660 (52%), Gaps = 35/660 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +   +YD SSI +LEGL+ VRMRPGMYIG T  K L+HL  E++DN++DE +AG  + I 
Sbjct: 2   AKKKSYDESSIHVLEGLDAVRMRPGMYIGSTSTKGLNHLIYEIVDNSVDEHLAGDCDTIH 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           VSL+ +G  TV D+GRGIPV  H K    S   ++ +TLHAGGKFDN  Y+ SGGLHGVG
Sbjct: 62  VSLNLDGSCTVEDDGRGIPVGMHAK--GVSAARLVFSTLHAGGKFDNEAYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP-----LEKKEKVRNKRGTRITFRPDP 213
            SVVNALS  + + + R   I    ++ G P        L    K +   GT+ITF PDP
Sbjct: 120 SSVVNALSSYMDIEIRRDGEIHHDHYAMGKPTEKLVNGLLPVIGKTKE-TGTKITFLPDP 178

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IF     F    +       AYL+ R+   +   +         E   F+   G++ ++
Sbjct: 179 QIFEK-TRFSEKDVKSRLHETAYLNPRLTIIYDDLR-----QETAEHLVFHEKEGIRGFV 232

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHES 332
           +   +    ++  I+  K E +G     VE A  +  E +  I  +CN I   EGG H +
Sbjct: 233 RELNKKAEGLTDVIYY-KGEFEGIQ---VEAAFQYVNEFHENILGFCNNIYNAEGGEHIT 288

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G +   T  I  YA        +  +    D+      ++S+   +P F GQTKTKL + 
Sbjct: 289 GFKTQFTTVINSYARELGILKDKDANFTGTDVRNGMTAVISIKHPDPRFEGQTKTKLDNK 348

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
           DA +       D    Y  +N      ++    + ++ R    + +              
Sbjct: 349 DASKATAKVTGDEIVLYFDRNLETLKTVISCAEKAAKIRRTEERTKTNLLTKQKFSFDQN 408

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLA+C    A   E+FIVEGDSAGGSAK ARNR  QA++P+RGKILNV  A  +K+  N
Sbjct: 409 GKLANCESRDASKCEIFIVEGDSAGGSAKMARNRLYQAIMPIRGKILNVEKASIDKVLAN 468

Query: 511 QQIMDLVQALGCRTR----SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
            +I  ++ A GC       + +  + LRY+K+I+MTDADVDGAHI +LLLT FY+ M +L
Sbjct: 469 AEIKTMINAFGCGFSEGFGNDFDIKKLRYDKIIVMTDADVDGAHIDTLLLTLFYRFMPEL 528

Query: 567 IEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           I + H++L  PPL++      +  Y +D+      LE+++K   G   + R+KGLGEM A
Sbjct: 529 IYEGHVYLAMPPLYKAMPAKGEEEYLYDDA----ALEKYRKRQTGSFTLQRYKGLGEMDA 584

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +QL ET M+   R L RV I     +   T+     LMG +   R  FI E A+  D + 
Sbjct: 585 AQLYETTMNPKTRRLRRVGIEDGRMASDVTE----MLMGNEVGPRRDFIYENANDAD-LD 639


>gi|157373918|ref|YP_001472518.1| DNA topoisomerase IV subunit B [Shewanella sediminis HAW-EB3]
 gi|157316292|gb|ABV35390.1| DNA topoisomerase (ATP-hydrolyzing) [Shewanella sediminis HAW-EB3]
          Length = 628

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 243/647 (37%), Positives = 361/647 (55%), Gaps = 26/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y + +I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AG+A  I+V 
Sbjct: 2   TNQYTSDAIEVLNGLDPVKRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHATKIDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+ILT LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHKDNSLEVIDDGRGMPVDIHPE-EGIPGVELILTKLHAGGKFSNDNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + +TV R   ++   F  G  +  L +     R   GTR+ F P P  F   
Sbjct: 118 VVNALSSRVEITVRRNGIVYDMAFEHGHKVEDLVETGTCGRRNSGTRVHFWPTPSYFD-F 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  ++L+ + ++KA L   +K  +             E  E+Y+  GL  YL + +++
Sbjct: 177 ENFSISKLVYLLKAKAVLCPGLKIKFVNK-------QTDEVLEWYYESGLTDYLTSSIKD 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVA 337
             ++  E F G  +        V+WAI W  E  +    SY N I T  GGTH +G R  
Sbjct: 230 ALMLPEEPFVGSLKGN---LEAVDWAITWLPEGGDYLNESYVNLIPTPLGGTHVNGFRQG 286

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R I +  +D+   +  ILSV +++P+F+GQTK KL S  +   V
Sbjct: 287 LLDSMREFCEFRNLIPRGIKLTPEDIWDRSSFILSVKMQDPQFSGQTKEKLSSRQSAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              +RD F  +L  +  +A  L E  I  +++RL+    ++V RK       LPGKL DC
Sbjct: 347 SGIVRDAFSLWLNTHTEQAEALAEMCINNAQKRLK--SAKKVARKKVTSGPALPGKLTDC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S       ELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     + ++  +Q++ D+
Sbjct: 405 SGQDPMRGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+GC         +LRY K+ I+ DAD DG HIA+LL   F +    L+E  H+++  
Sbjct: 465 SVAIGCDPDCDNI-SELRYGKICILADADSDGLHIATLLCALFMKHYKVLVEHGHIYVAM 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
           PPLFR+  G +  YA DE  K+ IL+    +  KGK++++RFKGLGEM   QL+ET MD 
Sbjct: 524 PPLFRVDVGKEVFYALDEAEKEGILDRIAAEKKKGKVQVTRFKGLGEMNPLQLRETTMDP 583

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           N R L+++ ++    ++         L   ++ +R  +++ +    D
Sbjct: 584 NTRRLVQLTVDDAEATIALMDML---LAKKRSGDRKTWLETKGDLAD 627


>gi|242241013|ref|YP_002989194.1| DNA topoisomerase IV subunit B [Dickeya dadantii Ech703]
 gi|242133070|gb|ACS87372.1| DNA topoisomerase IV, B subunit [Dickeya dadantii Ech703]
          Length = 631

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 251/649 (38%), Positives = 367/649 (56%), Gaps = 27/649 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  +EV L
Sbjct: 4   SSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARRVEVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGISV
Sbjct: 61  HPDQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + VTV R   ++   F +G  +  L       R   GTR+ F P+ + F D  
Sbjct: 120 VNALSRRVEVTVRRDGQVYDIAFEQGAKVQDLTITGTCGRRNTGTRVRFWPE-ESFFDSP 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L   V+  +       E       + + +  GL  YL   +   
Sbjct: 179 RFSVSRLTHLLKAKAVLCPGVEILFVDKVNETE-------QRWCYQDGLNDYLCEAVNGL 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +  + FTG           VEWA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 PTLPEKPFTGTISGDTE---AVEWALLWLPEGGELLTESYVNLIPTPQGGTHVNGLRQGL 288

Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E      R + + ++D+      +LS+ +++P+FAGQTK +L S  +   V 
Sbjct: 289 LDAMREFCEFRNILPRGVKLSAEDIWERCAYVLSLKMQDPQFAGQTKERLSSRQSAAFVS 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             ++D F  +L QN   A +L E  I  ++ R+R    ++V RK       LPGKLADC+
Sbjct: 349 GVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADCT 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+ 
Sbjct: 407 SQDLGKTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L+   H+++  P
Sbjct: 467 VAIGIDPDSDDL-TQLRYGKICILADADSDGLHIATLLCALFVRHFRPLVRDGHVYVAMP 525

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G +  YA DEE K  ILE+ K+  KGK  + RFKGLGEM   QL+ET +D N 
Sbjct: 526 PLYRIDLGKEVYYALDEEEKAGILEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPNT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDVG 685
           R L+++ I++    ++ T  +++ L+  K +++R  ++QE+    + + 
Sbjct: 585 RRLVQLTISE--EDVEQTLATMDMLLAKKRSEDRRNWLQEKGDRAE-LD 630


>gi|269103508|ref|ZP_06156205.1| topoisomerase IV subunit B [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268163406|gb|EEZ41902.1| topoisomerase IV subunit B [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 627

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 261/646 (40%), Positives = 367/646 (56%), Gaps = 28/646 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  +EV L
Sbjct: 4   QSYNAGAIEVLNGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARKVEVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L VVD+GRG+PV+ HP+    S +E+IL  LHAGGKF    Y+ SGGLHGVGISV
Sbjct: 61  HADQSLEVVDDGRGMPVDIHPE-EGVSGVELILCKLHAGGKFSGKNYQFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS+ + VTV R   I+   F  G  +S LE      R  +GTR+ F PD K F    
Sbjct: 120 VNALSNRVEVTVKRDGQIYQIAFEHGNKVSELEVIGTCGRRAKGTRVHFWPDAKYFDSA- 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL    ++KA L   ++  ++            E   + +  GLK YL   ++  
Sbjct: 179 KFSVSRLRNNLKAKAVLCPGLEIVFTDK-------VNGENYRWCYEDGLKDYLAEGVKGF 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
           +L+  E FTG            +WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 TLLPEEPFTGSFSG---QTEAADWALLWLPEGGELITESYVNLIPTAQGGTHVNGLRQGL 288

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E      R + + +DD+      +LSV +++P+FAGQTK +L S      V 
Sbjct: 289 LDAMREFCEFRNLLPRGVKLTADDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             ++D F  +L + P  A +L E  I  +  R+R    ++V RK       LPGKLADCS
Sbjct: 349 GVVKDAFSLWLNERPQLAEQLAEVCIANAHRRMR--ASKKVVRKKITSGPALPGKLADCS 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           Q   + TELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     ++++  +Q++ D+ 
Sbjct: 407 QQDLNRTELFLVEGDSAGGSAKQARDRMYQAIMPLRGKILNTWEVSADQVLASQEVHDIS 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG    S      LRY K+ ++ DAD DG HIA+LL   F +    L+   H+F+  P
Sbjct: 467 VALGIDPDSDDL-SGLRYGKICVLADADSDGLHIATLLCALFMKHFKALVRAGHVFIAMP 525

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G +  YA DE  K  ILE      +GK+ + RFKGLGEM   QL+ET MD N 
Sbjct: 526 PLYRIDLGKEVHYALDEAEKNVILERLSGK-RGKVNVQRFKGLGEMNPLQLRETTMDPNT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++ I+ D    + T + ++ L+G K A++R  ++QE+    +
Sbjct: 585 RRLVQLTIDDD----EQTNEMMDMLLGKKRAEDRRHWLQEKGDMAE 626


>gi|317493396|ref|ZP_07951817.1| DNA topoisomerase IV [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918339|gb|EFV39677.1| DNA topoisomerase IV [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 631

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 253/649 (38%), Positives = 362/649 (55%), Gaps = 27/649 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y+A SI +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A+ +EV L
Sbjct: 4   SSYNADSIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHASRVEVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGISV
Sbjct: 61  YPDQSLEVIDDGRGMPVDIHPE-EGVPAIELILCRLHAGGKFSNKNYQFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + VTV R   ++   F  G  +  L       +   GT + F PD + F D  
Sbjct: 120 VNALSKRVEVTVRRDGQVYQMAFENGDKVEDLHVTGTCGKRNTGTSVHFWPD-EQFFDSP 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L   V+  +       E       + + +  GL  YL   +   
Sbjct: 179 KFSVSRLNHLLKAKAVLCPGVEIVFKDKLNNTE-------QRWCYQDGLTDYLMEAVNGL 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +  + FTG           V+WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 ITLPEQAFTGSFSGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGL 288

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E      R + + +DD+      +LSV +++P+FAGQTK +L S      V 
Sbjct: 289 LDAMREFCEFRNLLPRGVKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             ++D F  +L QN   A +L E  I  ++ R+R    ++V RK       LPGKLADC+
Sbjct: 349 AIVKDAFSVWLNQNVQVAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADCT 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+ 
Sbjct: 407 AQDLSRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L+   H+++  P
Sbjct: 467 VAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFQSLVRGGHVYVAMP 525

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PLFRI  G +  YA DEE K  +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N 
Sbjct: 526 PLFRIDLGKEVYYALDEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPLQLRETTLDPNT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDVG 685
           R L+++ I+     +  T   ++ L+  K +++R  ++QE+    D + 
Sbjct: 585 RRLVQLTIDDT--DVDQTMAVMDMLLAKKRSEDRRNWLQEKGDLAD-LD 630


>gi|308177804|ref|YP_003917210.1| putative DNA gyrase subunit B [Arthrobacter arilaitensis Re117]
 gi|307745267|emb|CBT76239.1| putative DNA gyrase subunit B [Arthrobacter arilaitensis Re117]
          Length = 702

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 240/700 (34%), Positives = 346/700 (49%), Gaps = 61/700 (8%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           ++SDNY A  + +LEGLE VR RPGMYIG TD + L H   E+IDN++DE + G+   I+
Sbjct: 2   ASSDNYSARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALGGFGQAID 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V L  +G + V D+GRGIPV+  PK    S LE++ T LHAGGKF   +Y  SGGLHGVG
Sbjct: 62  VILHSDGSVEVQDDGRGIPVDLEPK-TGLSGLEVVFTKLHAGGKFGGGSYSASGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN----------------- 201
            SVVNALS  L V V R    +  +F RG P    +K  K  +                 
Sbjct: 121 ASVVNALSARLDVEVDRGGKTYGLQFRRGEPGKFTDKGRKKADAPFKAHVTATPPGIIGK 180

Query: 202 ----KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK--Y 255
                 GTRI +  D  IF  +A F  + L    +  ++L   ++     ++ + +    
Sbjct: 181 AKRGVTGTRIRYWADNHIFTPEAKFSYSDLQDRARQTSFLVPGLRITLRDERGLPDTPGA 240

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHR 299
             P +E F   GG+  ++     +  +     F G                   +     
Sbjct: 241 EGPHEEVFQHDGGISEFVDYLSSDSPVTDIWRFQGSGSFHEKVPVIDGNGRSHIEDVQRV 300

Query: 300 GTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK----RA 354
             V+ A+ W         S+ N I T +GGTH +G   A+ +  +K  E    K    + 
Sbjct: 301 CEVDVALRWGIGYETSLRSFVNIIATPKGGTHTAGFEQAMLKSFRKNVEANARKLKFGQK 360

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             +  DD++     +L+V + EP+F GQTK  L +   ++ V   L    +  L  N   
Sbjct: 361 DKLEKDDVLAGMTAVLTVRLAEPQFEGQTKEILGTPQVRQIVSKVLEKALNERLGSNKRN 420

Query: 415 ATKL----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
                   +E V+   + R+  R  +E   RKTA+    LP KL DC       +ELFIV
Sbjct: 421 EKAEASTLMEKVVNEMKSRVSARMHKETQRRKTALESSSLPTKLLDCRSKEVGKSELFIV 480

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           EGDSA G+A+ AR+  +QA+LP+RGKILNV  A    + +N +   ++Q +G  +   + 
Sbjct: 481 EGDSALGTARLARSSEHQALLPIRGKILNVQKASISDMLSNAECAAMIQVIGAGSGRSFD 540

Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI------T 583
            E  RY K+I+MTDADVDGAHI +LLLT FY+ M  +IE   ++   PPL RI      +
Sbjct: 541 IEQARYGKIILMTDADVDGAHIRTLLLTLFYRYMRPMIEHGRVYAAVPPLHRIEVINAGS 600

Query: 584 QGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRTLLR 642
           +  + +Y + E    K+L   +K G+  K  I R+KGLGEM A QL ET MD   R L R
Sbjct: 601 KQNEVIYTYSEAEMTKLLATLEKEGRRYKEPIQRYKGLGEMDADQLAETTMDPRHRMLRR 660

Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           V I       +  ++  + LMG+    R KFI + A  ++
Sbjct: 661 VGIEH----AQAAEEVFDLLMGSDVAPRKKFIIDGADDLE 696


>gi|292492462|ref|YP_003527901.1| DNA topoisomerase IV subunit beta [Nitrosococcus halophilus Nc4]
 gi|291581057|gb|ADE15514.1| DNA topoisomerase IV, B subunit [Nitrosococcus halophilus Nc4]
          Length = 628

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 254/647 (39%), Positives = 365/647 (56%), Gaps = 26/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S NY+A++I +L GLEPVR RPGMY   TD +  +HL  EVIDN++DE IAG+A  IEV 
Sbjct: 2   SGNYNAAAIEVLTGLEPVRKRPGMY---TDTQRPNHLAQEVIDNSVDEAIAGFATQIEVV 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +G L+V D+GRG+PV+ HP+      +E+ILT LHAGGKF + +Y  +GGLHGVG+S
Sbjct: 59  LHPDGSLSVGDDGRGMPVDLHPE-EQLPGVEVILTRLHAGGKFSSKSYRFAGGLHGVGVS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  L V + R    +   F+ G  +S L    KV +   GT + F PDP +F D 
Sbjct: 118 VVNALSSRLEVWIRRNGCEYHMAFANGERISALRAVNKVGKRNTGTLLHFWPDP-VFFDT 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  ARL  + ++KA L   +   +        +    E   + +  GL  YL+ +L  
Sbjct: 177 PKFSVARLKHVLRAKAVLCPGLNVIFR-------EAATGETVNWCYQEGLLAYLRDELGE 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVA 337
              +  + FTG+ +        V WA+AW  E  E+   SY N I T +GGTH +GLR  
Sbjct: 230 TPRLPEQPFTGEMQGNTE---EVCWALAWLPEGGEVVAESYVNLIPTPQGGTHVNGLRAG 286

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   I+++ E      R + +  DD+      +LSV + +P+F+GQTK +L S +    V
Sbjct: 287 LLEAIREFCEFRNLLPRGVKLAPDDVWDRVSYVLSVKLLDPQFSGQTKERLSSRECASFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L Q+ I    + E  I  ++ RLR  + + V RK       LPGKLADC
Sbjct: 347 SGVIKDAFSLWLNQHVITGEAIAELAISNAQRRLR--QAKRVVRKRIQTGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +      TELF+VEGDSAGGSAKQ R+R  QA++PLRGKILN       ++  +Q++ ++
Sbjct: 405 TSQDVSLTELFLVEGDSAGGSAKQGRDREFQAIMPLRGKILNTWEVDPAQVLGSQEVHNV 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S    + LRY K+ I+ DAD DGAHIA+LL   F +    L+E  H+++  
Sbjct: 465 AIAVGVDPGSDNL-DGLRYGKICILADADSDGAHIATLLSALFLRHFRPLVEAGHVYVAM 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDA 635
           PPL+RI  G    YA DE  +Q IL+       +GKI I RFKGLGEM   QL+ET M  
Sbjct: 524 PPLYRIDVGKHVFYALDEAERQGILDRIAAEKIRGKINIQRFKGLGEMNPMQLRETTMAP 583

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
             R L+R+ +    ++ +     ++K    +A +R ++++ER +  +
Sbjct: 584 ETRRLVRLTVAPHDDTDQLLDRLLSK---RRAADRRQWLEERGNLAE 627


>gi|160892781|ref|ZP_02073571.1| hypothetical protein CLOL250_00312 [Clostridium sp. L2-50]
 gi|156865822|gb|EDO59253.1| hypothetical protein CLOL250_00312 [Clostridium sp. L2-50]
          Length = 634

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 238/652 (36%), Positives = 349/652 (53%), Gaps = 36/652 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y A +I +L+GLEPVR+RPGMYIG T    L+HL  E+IDN++DE +AGY   I VS++
Sbjct: 2   SYSAKNIEVLKGLEPVRLRPGMYIGNTGRSGLNHLIQELIDNSVDEHLAGYCKNIYVSIN 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G  TV D+GRG+PV+ H +        ++ T LHAGGKF++STY+ISGGLHGVG +VV
Sbjct: 62  EDGSATVSDDGRGVPVDIH-ETEGIPAERVVYTVLHAGGKFNSSTYKISGGLHGVGSAVV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK------VRNKRGTRITFRPDPKIF 216
           NALS +L V VAR   +++  +  G+P++ L  +           + GT++T  PD  IF
Sbjct: 121 NALSKKLLVEVARDGYLYTDSYEYGVPVTELTPEGNLPRTRLKEKRTGTKVTLYPDDTIF 180

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                F A  +++  +  AYL+  +   +   ++  E         F+ PGGL  +++  
Sbjct: 181 ET-VKFKADAIMQRIKETAYLNPELTITFHNKRDGKE------PVVFHQPGGLSAFVEDI 233

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRV 336
            E  +  S        EK+      V       +    I  + N I   EGGTH +G + 
Sbjct: 234 SEGLTHTSPI-IAISGEKENITADIVFVMT--EDGEENIIGFTNNITNPEGGTHVTGFKS 290

Query: 337 ALTRGIKKYAELT---QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
              + I  YA        ++  ++   D+      I+SV   +P+F GQTKTKL + D  
Sbjct: 291 GFAKLINSYARNELGLLKEKDANLSGADIRSGMQAIISVKHPDPQFEGQTKTKLSNTDVT 350

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
           + V++ +++    Y  +N      + +  +  S+++       +             GKL
Sbjct: 351 KAVDDIVKEQLTVYFDRNYDVLKDICDRAVSLSKKKAL----EKSKINLNKFSFEGNGKL 406

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           A    N +   E+FIVEGDSAGGSAK ARNR  QA+LPLRGKILNV      K+  N +I
Sbjct: 407 AKQESNDSSKCEIFIVEGDSAGGSAKTARNRKYQAILPLRGKILNVEKKTVAKVLENAEI 466

Query: 514 MDLVQALGCRTRS----QYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
             L+ A GC         +    L Y+K+IIMTDADVDGAHIA+LLLTFFY+   DLI +
Sbjct: 467 KALINAFGCGFMQGYGNDFDINKLNYDKIIIMTDADVDGAHIATLLLTFFYRFYPDLINE 526

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
            H+++  PPL+R+ +G    Y + +E   +     +K   GK  I R+KGLGEM A QL 
Sbjct: 527 GHIYIAIPPLYRVGEGKHMQYLYSDEELNRY----RKKHTGKFTIQRYKGLGEMDADQLY 582

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           ET M+   R L +V IN  + + K TQ     LMGT+   R ++I+  ++  
Sbjct: 583 ETTMNPESRVLKQVSINSIVEANKLTQ----TLMGTEVAPRREYIETHSTDA 630


>gi|87119648|ref|ZP_01075545.1| DNA topoisomerase IV subunit B [Marinomonas sp. MED121]
 gi|86165124|gb|EAQ66392.1| DNA topoisomerase IV subunit B [Marinomonas sp. MED121]
          Length = 632

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 241/647 (37%), Positives = 358/647 (55%), Gaps = 24/647 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           +++ Y+A SI +L GLEPV+ RPGMY   TD    +HL  EVIDN++DE +A +A+ +EV
Sbjct: 2   SANQYNADSIEVLSGLEPVQKRPGMY---TDTSRPNHLAQEVIDNSVDEALAKHADKVEV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G L+V DNGRG+PV+ HP+    S +E+ILT LHAGGKF    Y+ SGGLHGVG+
Sbjct: 59  TLHKDGSLSVEDNGRGMPVDIHPE-EGISGVELILTKLHAGGKFSGDNYQFSGGLHGVGV 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS +L V V R    F   F+ G+    L +     +   GT+++F+ DPK F  
Sbjct: 118 SVVNALSTQLDVWVKRDGKQFHIAFADGLKTQDLTEIGTCGKKNTGTKVSFKADPKYFDS 177

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
                  RL  + ++KA L   +   +       E      KEE++F  GLK YL     
Sbjct: 178 A-KISVTRLKHLLKAKAVLCSGLHMIFID-----ESGAETVKEEWFFQDGLKDYLAQANA 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336
              L+    F G           V+WA+ W  E  E    SY N I T +GGTH +GLR 
Sbjct: 232 GFELLPESPFVGGM---TEVTQGVDWAVQWLPEGGELVTESYVNLIPTAQGGTHVNGLRT 288

Query: 337 ALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            L   I+++ +      R + + ++D+      +LS  ++EP+F+GQTK +L S      
Sbjct: 289 GLLEAIREFCDFRNLLPRGVKLTAEDVWERCSYVLSAKLQEPQFSGQTKERLSSRQIVAF 348

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           +   ++D F  +L ++  +  K+ + VI  +++R+R    ++V RK   +   LPGKLAD
Sbjct: 349 ISATVKDAFSLWLNKHVEDGQKIADIVISSAQKRMR--ASKKVVRKKITQGPALPGKLAD 406

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C+      +ELF+VEGDSAGGSAKQAR++  QA++PLRGKILN     S ++  +Q+I D
Sbjct: 407 CAGQDTVRSELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNSWEVDSSEVLASQEIHD 466

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  ALG     +     LRY K+ I+ DAD DG HIA+LL   F +    L++  H+F+ 
Sbjct: 467 ISVALGVDPADEDL-SQLRYGKLCILADADSDGLHIATLLCALFVRHFPALVKAGHIFVA 525

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK-IEISRFKGLGEMLASQLKETAMD 634
            PPL+RI    +  YA D+E K  IL +     K     + RFKGLGEM  SQL+ET M 
Sbjct: 526 MPPLYRIDVAKEVHYALDDEEKDIILHKLAAEHKRSTPNVQRFKGLGEMNPSQLRETTMA 585

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
            + R L+++ +     + +     ++K    +A +R  +++   +  
Sbjct: 586 PDTRRLIQLTMEDADTTGEALDRLLSK---KRAGDRKIWLETYGNLA 629


>gi|163814200|ref|ZP_02205592.1| hypothetical protein COPEUT_00354 [Coprococcus eutactus ATCC 27759]
 gi|158450649|gb|EDP27644.1| hypothetical protein COPEUT_00354 [Coprococcus eutactus ATCC 27759]
          Length = 647

 Score =  545 bits (1404), Expect = e-153,   Method: Composition-based stats.
 Identities = 240/651 (36%), Positives = 353/651 (54%), Gaps = 35/651 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y A +I +L+GLEPVR+RPGMYIG T    L+HL  E+IDN++DE +AGY N I VS++
Sbjct: 16  SYSAKNIEVLKGLEPVRLRPGMYIGNTGRSGLNHLIQELIDNSVDEHLAGYCNNIWVSIN 75

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G  TV D+GRG+PV+ H +        ++ T LHAGGKF++STY+ISGGLHGVG +VV
Sbjct: 76  EDGSATVSDDGRGVPVDLHEQ-EGIPAERVVYTVLHAGGKFNSSTYKISGGLHGVGSAVV 134

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLS-----PLEKKEKVRNKRGTRITFRPDPKIFG 217
           NALS++L V VAR   ++   + +GIP +      L K +    + GT +T  PD  IF 
Sbjct: 135 NALSNKLIVDVARDGYLYHDTYEKGIPTTELVDGMLPKTKLKEKRTGTTVTLYPDDTIFE 194

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F A  + +  +  AYL+  +   +   ++  E         F+ PGGL  +++   
Sbjct: 195 T-VKFKADAIKQRIKETAYLNPNLTITFQNKRDGEE------PIVFHQPGGLSAFVEDIS 247

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337
           +  +  S        EK G     V       +    I  + N I   EGGTH +G + A
Sbjct: 248 QGLTHTSPV-VAISGEKDGIAADIVFLMT--DDGEENIIGFTNNITNPEGGTHVTGFKSA 304

Query: 338 LTRGIKKYAELT---QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
             + I  YA        ++  ++   D+      I+SV   +P+F GQTKTKL + D  +
Sbjct: 305 FAKLINNYARNELGVLKEKDSNLTGADIRSGMQAIISVKHPDPQFEGQTKTKLSNTDVSK 364

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454
            V++ +++    Y  +N      +++  +    +R    K +    K +       GKLA
Sbjct: 365 AVDDIVKEQLTVYFDRNYDVLKDIVDRAV-ALSKRKALEKSKININKFSFEG---NGKLA 420

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
               + +   E+FIVEGDSAGGSAK ARNR  QA+LPLRGKILNV      K+  N +I 
Sbjct: 421 KQESSDSSKCEIFIVEGDSAGGSAKTARNRKYQAILPLRGKILNVEKKPVAKVLENAEIK 480

Query: 515 DLVQALGCRTRS----QYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
            L+ A GC         +    L Y+K+IIMTDADVDGAHIA+LLLTFFY+   DLI + 
Sbjct: 481 ALINAFGCGFMQGYGNDFDISKLNYDKIIIMTDADVDGAHIATLLLTFFYRFYPDLISEG 540

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           H+++  PPL+R+ +G    Y + ++     L +++K    K  I R+KGLGEM A QL E
Sbjct: 541 HIYIAIPPLYRVGEGKNIKYLYSDDE----LAKYRKTHTSKFTIQRYKGLGEMDADQLYE 596

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           T M+   R L +V +N  + + + TQ     LMGT+   R ++I+  ++  
Sbjct: 597 TTMNPETRLLKQVSVNSRIEANQLTQ----TLMGTEVAPRREYIETHSADA 643


>gi|116670180|ref|YP_831113.1| DNA topoisomerase IV subunit B [Arthrobacter sp. FB24]
 gi|116610289|gb|ABK03013.1| DNA topoisomerase IV subunit B [Arthrobacter sp. FB24]
          Length = 702

 Score =  545 bits (1404), Expect = e-153,   Method: Composition-based stats.
 Identities = 240/700 (34%), Positives = 347/700 (49%), Gaps = 61/700 (8%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + S +Y A  + +LEGLE VR RPGMYIG TD + L H   E+IDN++DE +AG+ + I+
Sbjct: 2   APSSDYTARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALAGFGHDIK 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           + L  +  + + D+GRGIP++  PK    + +E++ T LHAGGKF   +Y  SGGLHGVG
Sbjct: 62  IILHADNSVEIHDDGRGIPIDVEPK-TGLTGVEVVFTKLHAGGKFGGGSYTASGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------------------- 199
            SVVNALS  L V V R    +   F RG P    +   K                    
Sbjct: 121 ASVVNALSSRLDVEVDRGGKTYKMSFRRGEPGRFKDPGTKPDPAAAFEPFVNDSVLDVVG 180

Query: 200 ---RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
              R   GTRI +  D +IF   A F    L    +  ++L   +K      + IA   G
Sbjct: 181 KAKRGVTGTRIRYWADRQIFTPDAKFSYDELAARARQTSFLIPGLKLTVRDQRRIAGTPG 240

Query: 257 I--PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT----------------H 298
                +E F+  GG+  ++     + ++  +    G  + K T                 
Sbjct: 241 ELAGHEEIFHHDGGISEFVDFLAADPAVTDTWRLHGSGKFKETVPVLDERGHSQLAEVER 300

Query: 299 RGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK---RA 354
              V+ A+ W       + S+ N I T +GGTH+SG   AL +  +K  E    K     
Sbjct: 301 DCEVDVALRWGIGYDSTVRSFVNIISTPKGGTHQSGFEQALVKTFRKAVETNARKLKAGN 360

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RTVENALRDPFDHYLVQ 410
             I  DD+      +L+V + EP+F GQTK  L +   +    R VE  +    +     
Sbjct: 361 DKIEKDDIFAGLTAVLTVRLAEPQFEGQTKEILGTSAVRAIVARVVEKEINAKLNSANRN 420

Query: 411 NPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           +  ++  LLE ++   + R+  R  +E   RK A+    +P KLADC  +    +ELFIV
Sbjct: 421 DKAQSALLLEKIVSEMKSRISARVHKETQRRKNALETSSMPTKLADCRTDDVARSELFIV 480

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           EGDSA G+AK AR+   QA+LP+RGKILNV  A    + +N +   L+Q +G  +   + 
Sbjct: 481 EGDSALGTAKLARSSDFQALLPIRGKILNVQKASVGDMLSNAECAALIQVVGAGSGRSFD 540

Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI------T 583
               RY KVI+MTDADVDGAHI +LLLT F++ M  +I++  +F   PPL R+       
Sbjct: 541 ISAARYGKVILMTDADVDGAHIRTLLLTLFFRYMRPMIDEGRVFAAVPPLHRVEVINAGQ 600

Query: 584 QGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRTLLR 642
           +  + +Y + E     +L    K GK  K  I R+KGLGEM A QL ET MD   RTL +
Sbjct: 601 KANEMIYTYSEAELHVLLARLAKEGKRYKEPIQRYKGLGEMDAEQLAETTMDPRHRTLRK 660

Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           V I     + K  +++ + LMG+    R  FI   A+ +D
Sbjct: 661 VGIE----NAKQAEETFDLLMGSDVAPRKDFIIAGAAGLD 696


>gi|89092022|ref|ZP_01164977.1| DNA topoisomerase IV subunit B [Oceanospirillum sp. MED92]
 gi|89083757|gb|EAR62974.1| DNA topoisomerase IV subunit B [Oceanospirillum sp. MED92]
          Length = 630

 Score =  545 bits (1404), Expect = e-153,   Method: Composition-based stats.
 Identities = 249/647 (38%), Positives = 368/647 (56%), Gaps = 24/647 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S  Y+A SI +L GL+PVR RPGMY   T+    +HL  EVIDN++DE +AG+A  I+V 
Sbjct: 2   SKQYNAGSIEVLSGLDPVRRRPGMY---TETDRPNHLAQEVIDNSVDEALAGHAKQIDVV 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L+ +  L+V D+GRG+PV+ HP+    S +E+IL  LHAGGKF+N  Y  SGGLHGVG+S
Sbjct: 59  LNKDQSLSVTDDGRGMPVDIHPEQ-GVSGVELILCKLHAGGKFNNDNYNYSGGLHGVGVS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  L V V R + ++   F+ G  +S LE  +   +   GT + F PDP+ F   
Sbjct: 118 VVNALSKLLEVQVRRDSQVYRIGFADGEKVSDLEVIDTCGKRNTGTTVRFLPDPQYFDTH 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL    ++KA L   +K  ++            EKEE+Y+  GL  YL+   + 
Sbjct: 178 -KFSVSRLKHNLRAKAVLCPGLKVTFTDL-----TGAKREKEEWYYEDGLVDYLKGTTQV 231

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS--YCNTILTDEGGTHESGLRVA 337
             ++ +E F+G  + +      VEWA+ W  E  E+T   Y N I T +GGTH +GLR  
Sbjct: 232 FEVLPAEPFSGSLQGELD---AVEWAVQWLPEGGEMTCESYVNLIPTAQGGTHVNGLRTG 288

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + +DD+      +LS  +++P+FAGQTK +L S +    +
Sbjct: 289 LLEAMREFCEFRNLLPRGVKLTADDVWDKCCYVLSAKMQDPQFAGQTKERLSSREIAAFI 348

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L ++  E  +L E +I  ++ R+R    ++V RK   +   LPGKLADC
Sbjct: 349 SGTIKDAFSLWLNRHVEEGEQLAEVIISNAQRRMRSN--KKVVRKKVTQGPALPGKLADC 406

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S   A  +ELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN       ++  +Q+I D+
Sbjct: 407 SGGDAMQSELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDPTEVLGSQEIHDI 466

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S+   E LRY K+ I+ DAD DG HIA+LL   F +    L+   H+++  
Sbjct: 467 SVAIGVEPASENF-EGLRYGKICILADADSDGLHIATLLCALFVRHFKPLVTAGHVYVAM 525

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDA 635
           PPL+RI    +  YA D+  K  I+E  K   K  KI + RFKGLGEM   QL+ET M  
Sbjct: 526 PPLYRIDVAKEVFYALDDAEKDGIIERIKADRKNAKIGVQRFKGLGEMNPLQLRETTMSP 585

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           + R L+++ +     + +        L   ++ +R  ++Q + +  D
Sbjct: 586 DTRRLVQLTVEPGDGTNEVMDML---LAKKRSGDRKDWLQSKGNLAD 629


>gi|294634295|ref|ZP_06712836.1| DNA topoisomerase IV, B subunit [Edwardsiella tarda ATCC 23685]
 gi|291092288|gb|EFE24849.1| DNA topoisomerase IV, B subunit [Edwardsiella tarda ATCC 23685]
          Length = 631

 Score =  545 bits (1404), Expect = e-153,   Method: Composition-based stats.
 Identities = 252/649 (38%), Positives = 364/649 (56%), Gaps = 27/649 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  +EV L
Sbjct: 4   SSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSIDEALAGHATRVEVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGISV
Sbjct: 61  HPDQSLEVIDDGRGMPVDIHPE-EGVPAIELILCRLHAGGKFSNKNYQFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + V+V R   I+   F  G  +  L     V R   GT + F PD + F    
Sbjct: 120 VNALSHRVEVSVRRDGQIYQIAFENGEKVEELHVTGTVGRRNTGTSVHFWPDAQFFDSAR 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L   V+  +      +E       + + +  GL  YL   +   
Sbjct: 180 -FSVSRLSHLLKAKAVLCPGVEILFRDLVNGSE-------QRWCYQDGLTDYLMESVNGL 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +  + FTG      T    V+WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 VTLPEQPFTGTF---ATESEAVDWALLWLPEGGELLTESYVNLIPTQQGGTHVNGLRQGL 288

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E      R + + +DD+      +LSV +++P+FAGQTK +L S      V 
Sbjct: 289 LDAMREFCEFRNLLPRGVKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             ++D F  +L QN   A +L E  I  ++ R+R    ++V RK       LPGKLADCS
Sbjct: 349 GVVKDAFSLWLNQNVQAAEQLAELAINSAQRRMR--AAKKVVRKKLTSGPALPGKLADCS 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+ 
Sbjct: 407 AQDLARTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  P
Sbjct: 467 VAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRPLVQAGHVYVAMP 525

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G +  YA  EE K  +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N 
Sbjct: 526 PLYRIDLGKEVFYALSEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPLQLRETTLDPNT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDVG 685
           R L+++ I+     ++ T   ++ L+  K +++R  ++QE  +  + + 
Sbjct: 585 RRLVQLTIDD--EEMERTVAVMDMLLAKKRSEDRRNWLQENGNLAE-LD 630


>gi|209696078|ref|YP_002264008.1| DNA topoisomerase IV subunit B [Aliivibrio salmonicida LFI1238]
 gi|208010031|emb|CAQ80354.1| topoisomerase IV subunit B [Aliivibrio salmonicida LFI1238]
          Length = 626

 Score =  545 bits (1404), Expect = e-153,   Method: Composition-based stats.
 Identities = 255/647 (39%), Positives = 359/647 (55%), Gaps = 28/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  +EV 
Sbjct: 2   TEQYNAGAIEVLNGLEPVRRRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHAKKVEVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP     S +E+IL  LHAGGKF    YE SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHP-VEKVSGVELILCKLHAGGKFSGKNYEFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + VTV R   I+   F  G  +S L       R  RGT + F PD   F   
Sbjct: 118 VVNALSKRVEVTVRRDGEIYEIAFEHGEKVSDLTVVGTCGRRNRGTSVHFWPDTSYFDSP 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL+   ++KA L   ++  +       E        ++ +  GLK YL   +  
Sbjct: 178 -KFSVSRLVNNLKAKAVLCPGLEIVFKDKVNDKE-------YQWCYEDGLKDYLLEGVAG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
            +L+    FTG    KG      +WA+ W  E  E    SY N I T +GGTH +G+R  
Sbjct: 230 YTLLPEIPFTGAFLGKGE---AADWAVTWLPEGGELVSESYVNLIPTAQGGTHVNGMRQG 286

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + +DD+      +LSV +++P+FAGQTK +L S      +
Sbjct: 287 LLDAMREFCEFRNLLPRGVKLTADDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFI 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              L+D F  +L + P  A  + E  I  +  R+R    ++V RK       LPGKL DC
Sbjct: 347 SGVLKDAFSLWLNEKPQIAELIAEACIANAHRRMR--AAKKVVRKKIASGPTLPGKLTDC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      TELF+VEGDSAGGSAKQAR+R  QAV+PLRGKILN     ++++  +Q++ ++
Sbjct: 405 SIQDLARTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHNI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             ALG    S      LRY KV I+ DAD DG HIA+LL   + +    L+   H+++  
Sbjct: 465 SVALGIDPDSDDL-SGLRYGKVCILADADSDGLHIATLLCALYLKHFTSLVRAGHVYVAM 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA DE  K+ +LE    + + KI + RFKGLGEM   QL+ET MD N
Sbjct: 524 PPLYRIDCGKEVFYALDEAEKEGVLERLS-NKRAKINVQRFKGLGEMNPLQLRETTMDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ I+ D    + T + ++ L+G K AD+R  ++Q      +
Sbjct: 583 TRRLVQLTIDDD----EKTNEMMDMLLGKKRADDRRAWLQSNGDLAE 625


>gi|16273428|ref|NP_439677.1| DNA topoisomerase IV subunit B [Haemophilus influenzae Rd KW20]
 gi|260580311|ref|ZP_05848140.1| DNA topoisomerase IV, B subunit [Haemophilus influenzae RdAW]
 gi|1172018|sp|P43703|PARE_HAEIN RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|1574369|gb|AAC23174.1| topoisomerase IV, subunit B (parE) [Haemophilus influenzae Rd KW20]
 gi|260092988|gb|EEW76922.1| DNA topoisomerase IV, B subunit [Haemophilus influenzae RdAW]
          Length = 632

 Score =  545 bits (1404), Expect = e-153,   Method: Composition-based stats.
 Identities = 256/647 (39%), Positives = 362/647 (55%), Gaps = 24/647 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + NY A  I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE +AG+A  IEV 
Sbjct: 2   TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRPNHLAQEVIDNSVDEALAGFATKIEVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  + V DNGRG+PV+ HP     S +E+ILT LHAGGKF N  YE +GGLHGVGIS
Sbjct: 59  LHPDQSIEVTDNGRGMPVDIHP-TEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS+ + + V R   I+   F  G  +  LE      R   GT + F+P+PK F   
Sbjct: 118 VVNALSERVDIQVKRNGEIYKIAFENGSKVEELEIIGTCGRRTTGTIVHFKPNPKYFDSA 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL  + ++KA L   ++  +              ++ + +  GL  YL   +  
Sbjct: 178 -KFSVSRLRHLLRAKAVLCSGLEIKFIDK-------VNNTQDIWLYEDGLSDYLIEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G+ +        V WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 FETLPKKPFVGEFKG---ANEAVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   I+++ E      R + + +DD+      ILS+ +++ +FAGQTK +L S  +   V
Sbjct: 287 LLDAIREFCEFRNLLPRGVKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              L+D F  +L QN  +A KL E  I  ++ RLR    ++V RK  +    LPGKLADC
Sbjct: 347 SGVLKDAFSLWLNQNVQDAEKLAEIAISSAQRRLR--AAKKVVRKKLVSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
                  TELF+VEGDSAGGSAKQAR+R  QA+LPLRGKILN      +++  + +I D+
Sbjct: 405 GSQDLEKTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             ALG    S      LRY KV I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 465 AVALGIDPDSNDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAM 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI    +  YA DE  K+ IL+   K+ KGK  + RFKGLGEM  SQL+ET MD N
Sbjct: 524 PPLYRIDLNKEVFYALDENEKEAILDRL-KNKKGKPNVQRFKGLGEMNPSQLRETTMDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++  +   +   DT + ++ L+  K +++R  ++Q +   +D
Sbjct: 583 TRRLVQLTYDLGEDQGSDTLELMDMLLAKKRSEDRKNWLQAKGDQVD 629


>gi|332140122|ref|YP_004425860.1| DNA topoisomerase IV subunit B [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550144|gb|AEA96862.1| DNA topoisomerase IV subunit B [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 631

 Score =  545 bits (1404), Expect = e-153,   Method: Composition-based stats.
 Identities = 247/645 (38%), Positives = 359/645 (55%), Gaps = 21/645 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S+ Y++ +I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AG+A+ I+V 
Sbjct: 2   SNQYNSDAIEVLNGLDPVKRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHASSIKVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+    S +E+IL  LHAGGKF N  Y  SGGLHGVGIS
Sbjct: 59  LHEDQSLEVIDDGRGMPVDIHPE-EGISGVELILCKLHAGGKFSNKNYAFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS+ + VT+ R ++++   F  G  +  L+  +   +   GTR+ F PDP+ F   
Sbjct: 118 VVNALSNRVEVTIRRDSSVYQIAFENGDKVEDLQVIDTCGKRNTGTRVHFWPDPQYFDSA 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL    ++KA LS  ++  +       +     E +E+++  GLK YL   +E 
Sbjct: 178 -KFSVSRLKHNLRAKAVLSPGLRIRF-------DNKIAKESQEWFYEDGLKDYLYQAVEE 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
              + S+          T              +    SY N I T +GGTH +GLR  L 
Sbjct: 230 FETLPSDTPFVGNFTGNTEAADWAVMWLPEGGDLVTESYVNLIPTAQGGTHVNGLRQGLL 289

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R + +  DD+      ILS  +++P+FAGQTK +L S  A   V  
Sbjct: 290 ESMREFCEFRNLMPRGVKLSPDDIWDRCAYILSTKMQDPQFAGQTKERLSSRQASAFVSG 349

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L Q+   A  L E  I  ++ RLR+   ++V RK   +   LPGKL DCS 
Sbjct: 350 VVKDAFSLWLNQHTEIAEALAEMCINNAQRRLRQT--KKVARKKVTQGPALPGKLTDCSS 407

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +ELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     S ++  +Q+I D+  
Sbjct: 408 QDISYSELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNSWEVDSSQVLASQEIHDISV 467

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG    S      LRY K+ I+ DAD DG HIA+LL   F +    L+EQ H+++  PP
Sbjct: 468 ALGIDPDSTDL-SGLRYGKICILADADSDGLHIATLLCALFVRHFRTLVEQGHVYVAMPP 526

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANK 637
           LFRI  G +  YA DE  KQ IL+  +   K GK+ + RFKGLGEM   QL+ET MD N 
Sbjct: 527 LFRIDVGKEVYYALDEGEKQGILDRIEAEKKRGKVNVQRFKGLGEMNPLQLRETTMDPNT 586

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           R L+++ I      ++        L   ++ +R  +++ + +  +
Sbjct: 587 RRLVQLTIEDAEEMMELMDML---LAKKRSGDRKTWLESKGNMAE 628


>gi|78707341|gb|ABB46477.1| DNA gyrase subunit B [Acholeplasma brassicae]
          Length = 591

 Score =  545 bits (1404), Expect = e-153,   Method: Composition-based stats.
 Identities = 241/606 (39%), Positives = 351/606 (57%), Gaps = 18/606 (2%)

Query: 58  VRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIP 117
           VR RPGMYIG T E+ LHHL  E++DN++DE +AGYA+ I + L  N  + V DNGRGIP
Sbjct: 1   VRKRPGMYIGSTGERGLHHLVWEIVDNSIDECMAGYADEITIELLPNNIVKVTDNGRGIP 60

Query: 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN 177
           V+ HPK  ++  +E ILT LHAGGKFD  +Y++SGGLHGVG SVVNAL+    VT+AR  
Sbjct: 61  VDLHPK-THRPAVETILTVLHAGGKFDGKSYKVSGGLHGVGSSVVNALTVWFRVTIARDG 119

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            ++ Q++ RG+P   L+   +     GT I F  D +IF +   +D  RL    Q  A+L
Sbjct: 120 KLYQQEYKRGVPQYDLKVIGESS-HTGTVIEFLADDEIFKEVNTYDFERLRNRIQELAFL 178

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  VK   S  ++   K        + + GG+  Y+     ++  ++  +   + E  G 
Sbjct: 179 NRNVKINISDQRDP--KTEKHVYYSYQYEGGIIEYVHFLNTSKQEVNKTVIYIEKEIDGI 236

Query: 298 HRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAI 355
              TVE A+ +  +       + N I T EGG HE G ++ALTR + +YA+     K+  
Sbjct: 237 ---TVELALQYNSDYSTNLFSFANNIHTHEGGMHEDGFKLALTRVLGRYAQEQNILKKDE 293

Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415
           S I +D       I+S+   +P+F GQTKTKL + + ++       +  + YL++NP +A
Sbjct: 294 SFIGEDTREGLTAIVSIKHPDPQFEGQTKTKLGNPEVRQITSQITGEILERYLMENPADA 353

Query: 416 TKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSA 474
             ++E ++  S  R+  RK RE  R+ + +  L    KLADC       +E++IVEGDSA
Sbjct: 354 KAIIEKILMASRARIAARKAREATRRKSPLDMLGFASKLADCRNKSPEISEIYIVEGDSA 413

Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
           GGSAKQ R+   QA+LPLRGK+LNV  +  +KI +N++I+ ++QA G      +     R
Sbjct: 414 GGSAKQGRDSEFQAILPLRGKVLNVEKSRLDKILSNKEILSMIQAFGTGIGEDFDAAKAR 473

Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDE 594
           Y K++IMTDADVDGAHI +LLLTF Y+ +  LI+  ++++  PPL+++  G K  Y +DE
Sbjct: 474 YHKIVIMTDADVDGAHIRTLLLTFLYRHLKGLIDMGYVYIAQPPLYKVQSGKKVEYVYDE 533

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
           E   K+LE F     G+ +I R+KGLGEM   QL ET MD   RTLLRV +   +N    
Sbjct: 534 ERLPKVLEAFG----GRPQIQRYKGLGEMNPEQLWETTMDPTTRTLLRVSLQDAMN---- 585

Query: 655 TQDSIN 660
                +
Sbjct: 586 ADQVFS 591


>gi|183597858|ref|ZP_02959351.1| hypothetical protein PROSTU_01192 [Providencia stuartii ATCC 25827]
 gi|188022618|gb|EDU60658.1| hypothetical protein PROSTU_01192 [Providencia stuartii ATCC 25827]
          Length = 631

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 254/646 (39%), Positives = 365/646 (56%), Gaps = 26/646 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  IEV L
Sbjct: 4   SSYNAEAIEVLSGLEPVRRRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHAGHIEVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V+D+GRG+PV+ HP+    S +E+IL  LHAGGKF N  Y+ SGGLHGVGISV
Sbjct: 61  YPDQSLEVIDDGRGMPVDIHPEM-KVSAVELILGQLHAGGKFSNKNYQFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + VTV R   I+   F  G  +  L       +   GT + F PD + + D  
Sbjct: 120 VNALSKRIEVTVRRDGQIYQIAFENGDKVEELHVIGTCAKRNTGTSVHFWPD-ESYFDNP 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL    ++KA L   VK  +       E       + + +  GL  YL   +   
Sbjct: 179 RFSVSRLAHNLKAKAVLCPGVKITFKDQLNNTE-------QSWCYTDGLTDYLMEAVNGL 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
            L+  + FTG+   +       EWA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 ELLPDQPFTGEFSGE---SEAAEWALLWLPEGGELLTESYVNLIPTAQGGTHVNGLRQGL 288

Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E      R + + +DD+      +LSV +++P+FAGQTK +L S      V 
Sbjct: 289 LDAMREFCEFRNILPRGVKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVA 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             ++D F  +L QN   A +L E  I  ++ R+R    ++V RK       LPGKLADCS
Sbjct: 349 GVVKDAFSLWLNQNVQVAEQLAEMAIASAQRRMR--AAKKVVRKKLTSGPALPGKLADCS 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     S+++  +Q++ D+ 
Sbjct: 407 SQDLSMTELFLVEGDSAGGSAKQARDREYQAIMPLRGKILNTWEVSSDEVLASQEVHDIS 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S+     LRY KV I+ DAD DG HIA+LL   F +    L+++ H+++  P
Sbjct: 467 VAIGMDPDSEDL-SQLRYGKVCILADADSDGLHIATLLCALFVRHFPKLVKEGHVYMAMP 525

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G ++ YA DE  K  +L+   +  +GK  + RFKGLGEM   QL+ET +D N 
Sbjct: 526 PLYRIDLGKETFYALDESEKNAVLDRLSRK-RGKPNVQRFKGLGEMNPIQLRETTLDPNT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++ I+    + K+T   ++ L+  K +++R  ++QE+    +
Sbjct: 585 RRLVQLTIDD--ENYKETVAVMDMLLAKKRSEDRRNWLQEKGDMAE 628


>gi|254482729|ref|ZP_05095967.1| DNA topoisomerase IV, B subunit [marine gamma proteobacterium
           HTCC2148]
 gi|214037088|gb|EEB77757.1| DNA topoisomerase IV, B subunit [marine gamma proteobacterium
           HTCC2148]
          Length = 628

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 258/647 (39%), Positives = 367/647 (56%), Gaps = 28/647 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y A  I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A+ I+V L
Sbjct: 2   SQYTAEDIEVLTGLEPVRKRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHADQIDVIL 58

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G ++V DNGRG+PV+ HP+   K  +E+IL+TLHAGGKF N  YE SGGLHGVG+SV
Sbjct: 59  HKGGSVSVSDNGRGMPVDIHPEQ-GKPGVEVILSTLHAGGKFSNKNYEFSGGLHGVGVSV 117

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS EL V++ R  ++    FS G   S L   +   +   GT + F PD K F    
Sbjct: 118 VNALSSELVVSIKRDGSVHQITFSGGEKTSDLAVIDSCGKRNTGTMVKFTPDAKYFDSIN 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL+ + ++KA L   ++  +  +K+        E +E+Y+  GL  YL     + 
Sbjct: 178 -FSVSRLVHVLRAKAVLCPGLRVKFKDEKK-------GETQEWYYEDGLTDYLADATIDF 229

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVAL 338
             I  E F G           V+WA+ W  E  E+   SY N I T +GGTH +GLR  L
Sbjct: 230 PAIPEEPFVGSFSG---SSEGVDWAVQWLPEGGEVIAESYVNLIPTAQGGTHVNGLRTGL 286

Query: 339 TRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E  +   R I +  DD+      +LS  + +P+F+GQTK +L S +A   V 
Sbjct: 287 LDAMREFCELRSLLPRGIKLAPDDIWDRCCYVLSSKLGDPQFSGQTKERLSSREAAAFVS 346

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
              +D F  +L Q+  EA KL E  I  ++ R+R    +++ RK       LPGKLADCS
Sbjct: 347 GVSKDAFSLWLNQHTEEAEKLAEMCINNAQSRMR--SAKKIVRKKVSAGPALPGKLADCS 404

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                  ELF+VEGDSAGGSAKQAR+R  QA+LPLRGKILN     S++I  +Q++ ++ 
Sbjct: 405 GEDPTRGELFLVEGDSAGGSAKQARDREFQAILPLRGKILNTWEVDSQEILASQEVHNIS 464

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG    S     DLRY KV I+ DAD DG HIA+L+   F +    L+   H+++  P
Sbjct: 465 IALGIDPASDDL-SDLRYHKVCILADADSDGLHIATLICALFVRHFRSLVAAGHVYVAMP 523

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDAN 636
           PL+RI  G +  YA DE  KQ +L+  +   K G + + RFKGLGEM   QL+ET MD +
Sbjct: 524 PLYRIDVGKEVFYALDEGEKQGVLDRIEAEKKRGNVNVQRFKGLGEMNPLQLRETTMDPD 583

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+R+ ++    +   T + ++ L+  K A +R  +++++    +
Sbjct: 584 TRRLVRLVLD----AGDGTNNMLDMLLAKKRASDRKAWLEKKGDLAE 626


>gi|317125075|ref|YP_004099187.1| DNA topoisomerase IV subunit B [Intrasporangium calvum DSM 43043]
 gi|315589163|gb|ADU48460.1| DNA topoisomerase IV subunit B [Intrasporangium calvum DSM 43043]
          Length = 710

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 239/708 (33%), Positives = 348/708 (49%), Gaps = 61/708 (8%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
            S +    + + +Y A  +++LEGLE VR RPGMYIG TD++ L H   E+IDNA+DE +
Sbjct: 2   ASASRPAPNGNGDYTARHLQVLEGLEAVRKRPGMYIGSTDQRGLMHCLWEIIDNAVDEAL 61

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AG  + I+V L  +G + V DNGRGIPV+  P+    S +E++ T LHAGGKF  ++Y  
Sbjct: 62  AGVCDHIDVILARDGSIEVRDNGRGIPVDMEPR-TGLSGVELVFTKLHAGGKFGGTSYAA 120

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL----------------- 193
           +GGLHGVG SVVNALS  L V V R    +   F RG P                     
Sbjct: 121 TGGLHGVGASVVNALSARLDVEVDRDGRTYGMSFRRGEPGIFTDSGSGHSPDSPFEPYEK 180

Query: 194 ----EKKEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
                   K +    G+R+ F PDP IF   +  D   L+   +  ++L   ++     +
Sbjct: 181 RSAVPVIGKTKRGVTGSRVRFWPDPHIFLKGSVLDYDALVGRARQTSFLVPGLRLVIRDE 240

Query: 249 KE--IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT--------- 297
           +          P +E F+  GG+  +++    +  +       G    K T         
Sbjct: 241 RRLPGTPAADGPVEEVFHHDGGITEFVEFLAPDPPVTDVWRLQGSGTFKETVPILDNEGH 300

Query: 298 -------HRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
                      V+ A+ W +     + S+ N I T +GGTH +G   AL +  ++  E+ 
Sbjct: 301 MSPTELERECVVDVALRWGQGYDARMQSFVNIITTPKGGTHVAGFEQALLKVFRRQLEIN 360

Query: 350 Q---NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RTVENALRD 402
                        DD++     +++V + EP+F GQTK  L +   +    R VE  L  
Sbjct: 361 GRRLKVGNDKPDKDDVLAGMTAVVTVRLAEPQFEGQTKEVLGTNAVRAIVARVVETELTA 420

Query: 403 PFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIA 461
                   +  +A  LLE V+   + R+  R  +E   RK A+    LP KL DC  N  
Sbjct: 421 RLTSTKRGDKAQAALLLEKVVSEMKSRISARLHKETQRRKNALESSTLPTKLRDCRTNDV 480

Query: 462 HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
             +ELFIVEGDSA G+AK+ARN   QA+LP+RGKILNV  A    +  N +   ++Q +G
Sbjct: 481 DRSELFIVEGDSAMGTAKEARNSEFQALLPIRGKILNVQKASVSDMLKNAECASIIQVIG 540

Query: 522 CRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581
             +   +     RY KVIIMTDADVDGAHI +LLLT F++ M  L+E   ++   PPL R
Sbjct: 541 AGSGRSFDLAAARYGKVIIMTDADVDGAHIRTLLLTLFFRYMRPLVEAGRVYAAMPPLHR 600

Query: 582 IT------QGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMD 634
           I       +  + +Y ++E   ++ +   +K GK  K  + R+KGLGEM A QL +T MD
Sbjct: 601 IEVVNAGAKKNELIYTYNEIEMRRTVARLEKTGKKIKQPMQRYKGLGEMNADQLADTTMD 660

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
              RTL RV +       +  + +   LMG +   R  FI E A+ +D
Sbjct: 661 PRHRTLRRVTM----RDFEAAEGTFELLMGNEVAPRKDFIIESAAEVD 704


>gi|296129899|ref|YP_003637149.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulomonas flavigena DSM
           20109]
 gi|296021714|gb|ADG74950.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulomonas flavigena DSM
           20109]
          Length = 713

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 236/708 (33%), Positives = 344/708 (48%), Gaps = 61/708 (8%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
               S    Y A  + +LEGLE VR RPGMYIG TD + L H   E+IDN++DE + G+ 
Sbjct: 1   MTTTSPQAGYTARHLSVLEGLEAVRKRPGMYIGTTDSRGLMHCLWEIIDNSVDEALGGHG 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + IEV L  +  + V DNGRGIPV+  PK    + +E++LT LHAGGKF   +Y  SGGL
Sbjct: 61  DRIEVVLHADSSVEVRDNGRGIPVDVEPK-TGLTGVEVVLTKLHAGGKFGGGSYAASGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV--------------- 199
           HGVG SVVNALS  L V V R        F RG P    +                    
Sbjct: 120 HGVGASVVNALSARLDVEVDRNGRTHRMTFHRGEPGVFDDSAGVSPESPFEPFVQGSELA 179

Query: 200 ------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
                 +   GTR+ +  D +IF   A F    L+   +  ++L   +      ++ I  
Sbjct: 180 VVGKVGKGVTGTRVRYWADRQIFPKTAVFSYDELVTRARQTSFLVPGLAITVRDERGIPG 239

Query: 254 K--YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KK 295
                 P +E F   GG+  ++     +  +  +   TG                   ++
Sbjct: 240 TPGEHGPHEETFLHTGGVLDFVDHLAPDAPVTDTWHLTGSGTFTETVPVLDSRGHMTPQE 299

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA 354
            T    V+ A+ W      E+ S+ N I T +GGTH +G   AL + ++        +  
Sbjct: 300 VTRDCEVDVAVRWGTGYATEVRSFVNIISTPKGGTHLAGFETALLKTLRTQVTANARRLK 359

Query: 355 ISII--------SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RTVENALRD 402
           IS           +D++     +++V + EP+F GQTK  L +   +    + VE+ L  
Sbjct: 360 ISAKDSSSERLEKEDVLAGLTAVVTVRLAEPQFEGQTKEVLGTGPVRGIVAKVVESELTA 419

Query: 403 PFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK-TAIRKLRLPGKLADCSQNIA 461
            F     ++      LL+ V+     R+  RKQ+E++R+  A+    LP KLADC  +  
Sbjct: 420 LFSSSKREHKAHTALLLDKVVGEMRARVSARKQKEISRRKNALESSSLPAKLADCRIDDV 479

Query: 462 HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
             +ELFIVEGDSA G+AK AR+   QA+LP+RGKILNV  A    +  N +   ++Q +G
Sbjct: 480 SRSELFIVEGDSALGTAKLARSSDFQALLPIRGKILNVQKASVGDMLKNAECAAIIQVVG 539

Query: 522 CRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581
             +   +  E  RY K+++MTDADVDGAHI +LLLT F++ M  L+E   ++   PPL R
Sbjct: 540 AGSGRTFDLEAARYGKIVLMTDADVDGAHIRTLLLTLFFRYMRPLVEDGRVYAAVPPLHR 599

Query: 582 I------TQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMD 634
           I      ++  + +Y + E      L++  + G+  K +I R+KGLGEM A QL ET MD
Sbjct: 600 IEVIGAGSRKNEYLYTYSEAELAATLKKLDRAGRRYKDDIQRYKGLGEMDADQLAETTMD 659

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
              RTL RV I +   +    +     LMG+    R  FI   A  +D
Sbjct: 660 PRHRTLRRVRIGEAEAAAAQVEKVFELLMGSDVAPRKDFIVANAHALD 707


>gi|240950305|ref|ZP_04754580.1| DNA topoisomerase IV subunit B [Actinobacillus minor NM305]
 gi|240295207|gb|EER46015.1| DNA topoisomerase IV subunit B [Actinobacillus minor NM305]
          Length = 636

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 253/649 (38%), Positives = 372/649 (57%), Gaps = 27/649 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y A  I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE ++GYA  I+V L
Sbjct: 4   KRYGADEITVLKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALSGYATQIDVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V+DNGRG+PV+ H      S +E+ILT LHAGGKF N  Y  SGGLHGVGISV
Sbjct: 61  HKDNSLEVIDNGRGMPVDIHS-TEKMSGVELILTKLHAGGKFSNKNYTFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS+ + +T+ R   I++  F+ G+ +  L       + + GT + F P+PK F    
Sbjct: 120 VNALSERVEITIKRNGEIYTIAFANGVKVEDLTVVGSCPKRQTGTTVRFYPNPKYFDSP- 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L  ++   ++             +E +Y+  GL  YL   L+  
Sbjct: 179 KFSVSRLRHLLKAKAVLCPKLTINFTDK-------INDTQESWYYEDGLSDYLSEALKEY 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             + +  F G    +      V WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 ECLPNPPFIGDVTSETE---AVSWALTWLPEGGELLAESYVNLIPTAQGGTHVNGLRNGL 288

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
            + I ++ E+     + I + +DD+      +LS+ I+EP+FAGQTK +L S  A   V+
Sbjct: 289 LKAITEFCEIHNLLPKGIKLTADDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVD 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
           + ++D F  +L QN      L E  I  ++ RLR    ++V RK  +    LPGKLADC+
Sbjct: 349 STIKDAFSLWLNQNVQIGKTLAELAISSAQSRLR--AAKKVVRKKLVSGPALPGKLADCT 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN     S+++  +Q++ D+ 
Sbjct: 407 SQDLSRTELFLVEGDSAGGSAKQARDKEYQAILPLRGKILNTWEVSSDQVLASQEVHDIA 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    +    ++LRY KV I+ DAD DG HIA+LL   F +   +L++  H+++  P
Sbjct: 467 IAMGIDPDNDNL-DELRYGKVCILADADSDGLHIATLLCALFLRHFPNLVKNGHVYVAMP 525

Query: 578 PLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PL+RI  G  +  YA DE+ K+ IL    K  KGK  + RFKGLGEM  SQL+ET MD +
Sbjct: 526 PLYRIDIGKDEVHYALDEDEKEAILARLAKK-KGKPNVQRFKGLGEMNPSQLRETTMDPS 584

Query: 637 KRTLLRVEINKDLNSLKD--TQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++   +     +D  T + ++ L+  K +++R +++Q R +  +
Sbjct: 585 TRRLVQLTFEEREEDGQDSQTFELMDMLLAKKRSEDRKQWLQNRGNEAE 633


>gi|119470529|ref|ZP_01613232.1| DNA topoisomerase IV subunit B [Alteromonadales bacterium TW-7]
 gi|119446230|gb|EAW27507.1| DNA topoisomerase IV subunit B [Alteromonadales bacterium TW-7]
          Length = 629

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 237/641 (36%), Positives = 347/641 (54%), Gaps = 22/641 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY+A +I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AG+A  I+V L
Sbjct: 4   QNYNAEAIEVLNGLDPVKRRPGMY---TDTVRPNHLGQEVIDNSVDEAMAGHATKIDVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V D+GRG+P++ HP+      +E+I T LHAGGKF N  Y+ SGGLHGVGISV
Sbjct: 61  HEDNSLEVSDDGRGMPIDIHPE-EGIPGIELIFTKLHAGGKFSNKNYQFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + VTV R    +   F  G  +  L     V +   GT + F  D   F    
Sbjct: 120 VNALSTRVEVTVRRDAQQYRMAFENGDKVEDLNVIGTVGKRNTGTTVRFWADASYFDSAN 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +   +L  + ++KA L   ++  +             E +E+++  GLK YL   ++  
Sbjct: 180 -YSITKLNHLLKAKAVLCPGLRIKFVNK-------QTKETQEWFYETGLKDYLIEAVKGF 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
             +  + F G+  K                      SY N I T +GGTH +GLR  L  
Sbjct: 232 ETLPQDPFVGEF-KSAIEGVDWAVVWLPEGGESIAESYVNLIPTAQGGTHVNGLRQGLLE 290

Query: 341 GIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
            ++++ E      R + +  DD+      +LSV +++P+FAGQTK KL S      V   
Sbjct: 291 AMREFCEFRNLLPRGVKLTPDDIWERCSYVLSVKMQDPQFAGQTKEKLSSRTCAALVSGV 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
           ++D F  +L ++   A  L E  I  ++ RL+    ++V RK       LPGKL DCS  
Sbjct: 351 VKDAFSLWLNEHTDTAELLAELCISNAQSRLK--AAKKVVRKRVTAGPALPGKLTDCSAA 408

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
               TELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     S +I  +Q++ D+  A
Sbjct: 409 DNDRTELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVESGQILASQEVHDISVA 468

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           LG    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  PPL
Sbjct: 469 LGIDPDSADM-SGLRYNKICILADADSDGLHIATLLCALFVRHFPQLVKTGHVYVAMPPL 527

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANKR 638
           FRI  G +  YA DE+ K  IL   +   K GK+ + RFKGLGEM   QL+ET MD N R
Sbjct: 528 FRIDIGKEVYYALDEDEKTSILARIEAEKKRGKVNVQRFKGLGEMNPLQLRETTMDPNTR 587

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679
            L+++ +++++ +++        L   ++ +R +++++  +
Sbjct: 588 RLVQLTLDEEVQTMEMMDML---LAKKRSPDRRQWLEDHGN 625


>gi|212633643|ref|YP_002310168.1| DNA topoisomerase IV subunit B [Shewanella piezotolerans WP3]
 gi|212555127|gb|ACJ27581.1| DNA gyrase, B subunit [Shewanella piezotolerans WP3]
          Length = 631

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 240/648 (37%), Positives = 357/648 (55%), Gaps = 26/648 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ Y + +I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AG+A+ I+
Sbjct: 3   AMTNQYTSDAIEVLNGLDPVKRRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHASRID 59

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V L  +  L V D+GRG+PV+ HP+      +E+ILT LHAGGKF N  Y+ SGGLHGVG
Sbjct: 60  VILHADNSLEVTDDGRGMPVDIHPE-EGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVG 118

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFG 217
           ISVVNALS  + +TV R   ++   F  G  +  L       R   GTR+ F PD   F 
Sbjct: 119 ISVVNALSSRVEITVRRNAEVYDMAFEHGEKVEDLRVTGTCGRRNTGTRVHFWPDASYFD 178

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F   +L  + ++KA L   ++  +             E +E+++  GL+ YL++ +
Sbjct: 179 SGN-FSITKLSYLLKAKAVLCPGLRIKFVNK-------QTNETQEWFYESGLEDYLKSSI 230

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLR 335
           +   ++    F G  +         +WAI W  E  +    SY N I T  GGTH +G R
Sbjct: 231 DGVPMLPEVPFVGNFKGN---LEAADWAITWLPEGGDYLNESYVNLIPTPLGGTHVNGFR 287

Query: 336 VALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
             L   ++++ E      R I +  +D+      ILS+ +++P+FAGQTK KL S     
Sbjct: 288 QGLLESMREFCEFRNLVPRGIKLTPEDIWDRCTFILSIKMQDPQFAGQTKEKLSSRQCAA 347

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454
            V   +RD F  +L  N  +A  L +  I  +++RL+    ++V RK       LPGKL 
Sbjct: 348 FVSGIVRDAFSLWLNTNTEQAEALADMCINNAQKRLK--AAKKVARKRITSGPALPGKLT 405

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS       ELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     + ++  +Q++ 
Sbjct: 406 DCSGQDPMRGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDATQVLASQEVH 465

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           D+  A+GC   S     +LRY K+ I+ DAD DG HIA+LL   F +    L+E+ H+++
Sbjct: 466 DISVAIGCDPDSSDI-SELRYGKICILADADSDGLHIATLLCALFMKHYRVLVEEGHIYV 524

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAM 633
             PPLFRI  G +  YA DE  +  IL+       KGK++++RFKGLGEM   QL+ET M
Sbjct: 525 AMPPLFRIDIGKEVFYALDEAERDGILDRIAAEKRKGKVQVTRFKGLGEMNPLQLRETTM 584

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           D N R L+++ ++   ++L         L   ++ +R  +++ +    
Sbjct: 585 DPNTRRLVQLTVDDADDTLAVMDML---LAKKRSSDRKVWLETKGDLA 629


>gi|260599300|ref|YP_003211871.1| DNA topoisomerase IV subunit B [Cronobacter turicensis z3032]
 gi|260218477|emb|CBA33631.1| DNA topoisomerase 4 subunit B [Cronobacter turicensis z3032]
          Length = 630

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 250/647 (38%), Positives = 365/647 (56%), Gaps = 26/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQSYNADAIEVLTGLEPVRRRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHARRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R   I++  F  G  +  L       + + GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVNVKRDGQIYNIAFENGEKVKELSVVGTCPKRQTGTSVHFWPD-EKFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL  + ++KA L   V+  +       E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLTHLLKAKAVLCPGVEINFKDQVNNTE-------QRWCYLDGLNDYLCEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G    +      V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LITLPEKPFIGNFSGETE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A +L E  I  ++ RLR    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFSLWLNQNVQAAEQLAELAIASAQRRLR--AAKKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY KV I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKVCILADADSDGLHIATLLCALFVKHFRSLVKGGHVYVAM 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA DEE K  +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 524 PPLYRIDLGKEVYYALDEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ I+ D ++       ++ L+  K +++R  ++QE+    D
Sbjct: 583 TRRLVQLTISDDDDARTLA--VMDMLLAKKRSEDRRNWLQEKGDMAD 627


>gi|51597693|ref|YP_071884.1| DNA topoisomerase IV subunit B [Yersinia pseudotuberculosis IP
           32953]
 gi|186896834|ref|YP_001873946.1| DNA topoisomerase IV subunit B [Yersinia pseudotuberculosis PB1/+]
 gi|51590975|emb|CAH22633.1| topoisomerase IV subunit B [Yersinia pseudotuberculosis IP 32953]
 gi|186699860|gb|ACC90489.1| DNA topoisomerase IV, B subunit [Yersinia pseudotuberculosis PB1/+]
          Length = 631

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 249/648 (38%), Positives = 359/648 (55%), Gaps = 26/648 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
              +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  I+V
Sbjct: 2   TESSYNADAIEVLSGLEPVRRRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHARRIDV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGI
Sbjct: 59  ILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS  + VTV R + I+S  F  G  +  L+      +   GT + F PD   F  
Sbjct: 118 SVVNALSKRVEVTVRRDSQIYSIAFENGDKVQDLQVIGTCGKRNTGTSVHFWPDVSFFDS 177

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F  +RL  + ++KA L   V+  +       E       + + +  GL  YL   + 
Sbjct: 178 PR-FSVSRLSHLLKAKAVLCPGVEIVFKDQVNNTE-------QRWCYADGLTDYLMEAVN 229

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336
               +    F G           ++WA+ W  E  E    SY N I T +GGTH +GLR 
Sbjct: 230 GFITLPEAPFVGSFAGDTE---AIDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 286

Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            L   ++ + E      R + + +DD+      +LSV +++P+FAGQTK +L S      
Sbjct: 287 GLLDAMRDFCEYRNILPRGVKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 346

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           V   ++D F  +L QN   A +L E  I  ++ R+R    ++V RK       LPGKLAD
Sbjct: 347 VSGVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C+    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D
Sbjct: 405 CTSQDLNLTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 464

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  A+G    S+     LRY KV I+ DAD DG HIA+LL   F +    L+   H+++ 
Sbjct: 465 ISVAIGIDPDSEDL-SQLRYGKVCILADADSDGLHIATLLCALFVRHFRALVRNGHVYVA 523

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+RI  G +  YA DEE K  +LE+ K+  +GK  + RFKGLGEM   QL+ET +D 
Sbjct: 524 MPPLYRIDLGKEVFYALDEEEKAGVLEQLKRK-RGKPNVQRFKGLGEMNPLQLRETTLDP 582

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           N R L+++ I+ D          ++ L+  K +++R  ++QE+    +
Sbjct: 583 NTRRLVQLTISDDDIDHTLA--VMDMLLAKKRSEDRRNWLQEKGDTAE 628


>gi|156932596|ref|YP_001436512.1| DNA topoisomerase IV subunit B [Cronobacter sakazakii ATCC BAA-894]
 gi|156530850|gb|ABU75676.1| hypothetical protein ESA_00378 [Cronobacter sakazakii ATCC BAA-894]
          Length = 630

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 249/647 (38%), Positives = 365/647 (56%), Gaps = 26/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQSYNADAIEVLTGLEPVRRRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHARRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R   I++  F  G  +  L       + + GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVNVKRDGQIYNIAFENGEKVKELSVVGTCPKRQTGTSVHFWPD-EKFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL  + ++KA L   V+  +       E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLTHLLKAKAVLCPGVEINFKDQVNNTE-------QRWCYQDGLNDYLSEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G    +      V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LITLPEKPFIGNFSGETE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A +L E  I  ++ RLR    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDVFSLWLNQNVQAAEQLAELAIASAQRRLR--AAKKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKGGHVYVAM 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA DEE K  +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 524 PPLYRIDLGKEVYYALDEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ I+ D ++       ++ L+  K +++R  ++QE+    D
Sbjct: 583 TRRLVQLTISDDDDARTLA--VMDMLLAKKRSEDRRNWLQEKGDMAD 627


>gi|90020023|ref|YP_525850.1| DNA topoisomerase IV subunit B [Saccharophagus degradans 2-40]
 gi|89949623|gb|ABD79638.1| DNA topoisomerase IV subunit B [Saccharophagus degradans 2-40]
          Length = 631

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 251/645 (38%), Positives = 368/645 (57%), Gaps = 26/645 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY A  I +L GL+PV+ RPGMY   TD    +HL  E+IDN++DE +AG+A  IEV L 
Sbjct: 3   NYSAEDIEVLTGLDPVKKRPGMY---TDTVRPNHLAQEIIDNSVDEALAGHAKKIEVILH 59

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV D+GRG+PV+ HP+   K  +E+IL+TLHAGGKF N  Y+ SGGLHGVG+SVV
Sbjct: 60  KDQSVTVTDDGRGMPVDLHPEQ-KKPGVEVILSTLHAGGKFSNKNYQFSGGLHGVGVSVV 118

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L VT+ R   ++   F  G  +S LE  +   +   GT + F P+P  F     
Sbjct: 119 NALSESLEVTIRRDGQVYRMGFKNGDKVSDLEVIDTCGKRNTGTSVRFLPNPSYFDSH-K 177

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F  +RL    ++KA L   ++  ++ +          +K+ +Y+  GLK YL    E   
Sbjct: 178 FSVSRLRHNLRAKAVLCPGLEVVFTDE-------QTGDKDTWYYEDGLKDYLSQATEGWE 230

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALT 339
            + ++ F G            +WA+ W  E  E    SY N I T +GGTH +GLR  L 
Sbjct: 231 TLPADPFVGSFTG---TTEAADWAVQWLPEGGEVTQESYVNLIPTAQGGTHVNGLRTGLM 287

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             +++Y E+     R I I  DD+ ++   +LS  + +P+F+GQTK +L S +A   V  
Sbjct: 288 EAMREYCEIRNLVPRGIKITPDDVWMNCCFVLSSKLADPQFSGQTKERLSSREAAAFVSG 347

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
             +D F  +L Q+  E  KL E+ I  +++R+R    ++V RK       LPGKLADCS 
Sbjct: 348 VAKDAFSLWLNQHTEEGDKLAEFCINNAQKRVR--SSKKVARKKITAGPALPGKLADCSS 405

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
           +     ELF+VEGDSAGGSAKQAR+R +QA++PLRGKILN     S+++  +Q++ D+  
Sbjct: 406 DDPANGELFLVEGDSAGGSAKQARDRDHQAIMPLRGKILNTWEVESQEVLASQEVHDISV 465

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG    S    + LRY K+ I+ DAD DG HIA+LL   FYQ    L+   H+++  PP
Sbjct: 466 ALGIDPGSDNL-DGLRYHKICILADADSDGLHIATLLCALFYQHFRALVSAGHVYVAMPP 524

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           L+RI  G    YA D+  KQ IL+    +  KGK+ + RFKGLGEM   QL+ET M  + 
Sbjct: 525 LYRIDIGQDVYYALDDSEKQGILDRIVAEKKKGKVNVQRFKGLGEMNPLQLRETTMARDT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           R L+++ I+++  + +        L   ++ +R  +++++    D
Sbjct: 585 RRLVQLTIDEEDETTQLMDML---LAKKRSGDRKTWLEDKGDLAD 626


>gi|90580747|ref|ZP_01236550.1| DNA topoisomerase IV subunit B [Vibrio angustum S14]
 gi|90438015|gb|EAS63203.1| DNA topoisomerase IV subunit B [Vibrio angustum S14]
          Length = 627

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 262/646 (40%), Positives = 368/646 (56%), Gaps = 28/646 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  +EV L
Sbjct: 4   QSYNAGAIEVLNGLEPVRRRPGMY---TDTARPNHLGQEVIDNSVDEALAGHARKVEVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L VVD+GRG+PV+ HP+    S +E+IL  LHAGGKF    Y+ SGGLHGVGISV
Sbjct: 61  HADQSLEVVDDGRGMPVDIHPE-EGVSGVELILCKLHAGGKFSGKNYQFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + VTV R   ++   F  G  +S LE      R  +GTR+ F PDPK F    
Sbjct: 120 VNALSKRVEVTVKRDGQVYQIAFENGDKVSDLEVIGTCGRRAKGTRVHFWPDPKYFDSA- 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL    ++KA L   ++  ++            E   + +  GLK YL   ++  
Sbjct: 179 KFSVSRLKSNLKAKAVLCPGLEIVFTNK-------ITDETIRWCYEDGLKDYLAEGVKGY 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
           +L+  E FTG      +     +WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 TLLPEEPFTGVFS---SQTEAADWALLWLPEGGELITESYVNLIPTAQGGTHVNGLRQGL 288

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E      R + + +DD+      +LSV I++P+FAGQTK +L S      V 
Sbjct: 289 LDAMREFCEFRNLLPRGVKLTADDIWERCAYVLSVKIQDPQFAGQTKERLSSRQCAAFVS 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             ++D F  +L + P  A +L E  I  +  R+R    ++V RK       LPGKLADCS
Sbjct: 349 GVVKDAFSLWLNERPQLAEQLAEVCIANAHRRMR--ASKKVVRKKIASGPALPGKLADCS 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           Q   + TELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     ++++  +Q++ D+ 
Sbjct: 407 QQDLNRTELFLVEGDSAGGSAKQARDRMFQAIMPLRGKILNTWEVSADQVLASQEVHDIS 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG    S      LRY K+ ++ DAD DG HIA+LL   F +    L+   H+F+  P
Sbjct: 467 VALGIDPDSDDL-SGLRYGKICVLADADSDGLHIATLLCALFMKHFETLVRAGHVFIAMP 525

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G +  YA DE  K  ILE  K   +GK+ + RFKGLGEM   QL+ET MD N 
Sbjct: 526 PLYRIDLGKEVYYALDEAEKNSILERLKGK-RGKVNVQRFKGLGEMNPLQLRETTMDPNT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++ I+ D     +T + ++ L+G K A++R  ++Q +    +
Sbjct: 585 RRLVQLTIDDD----SETNEMMDMLLGKKRAEDRRHWLQSKGDMAE 626


>gi|22127385|ref|NP_670808.1| DNA topoisomerase IV subunit B [Yersinia pestis KIM 10]
 gi|45442746|ref|NP_994285.1| DNA topoisomerase IV subunit B [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108810691|ref|YP_646458.1| DNA topoisomerase IV subunit B [Yersinia pestis Nepal516]
 gi|145597760|ref|YP_001161836.1| DNA topoisomerase IV subunit B [Yersinia pestis Pestoides F]
 gi|150260300|ref|ZP_01917028.1| topoisomerase IV subunit B [Yersinia pestis CA88-4125]
 gi|153950532|ref|YP_001399571.1| DNA topoisomerase IV subunit B [Yersinia pseudotuberculosis IP
           31758]
 gi|162420269|ref|YP_001604896.1| DNA topoisomerase IV subunit B [Yersinia pestis Angola]
 gi|165924916|ref|ZP_02220748.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165939896|ref|ZP_02228435.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166008986|ref|ZP_02229884.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166212022|ref|ZP_02238057.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167419067|ref|ZP_02310820.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167425082|ref|ZP_02316835.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|170022910|ref|YP_001719415.1| DNA topoisomerase IV subunit B [Yersinia pseudotuberculosis YPIII]
 gi|218927861|ref|YP_002345736.1| DNA topoisomerase IV subunit B [Yersinia pestis CO92]
 gi|229837350|ref|ZP_04457513.1| topoisomerase IV subunit B [Yersinia pestis Pestoides A]
 gi|229840562|ref|ZP_04460721.1| topoisomerase IV subunit B [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229842890|ref|ZP_04463042.1| topoisomerase IV subunit B [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229900889|ref|ZP_04516013.1| topoisomerase IV subunit B [Yersinia pestis Nepal516]
 gi|270487739|ref|ZP_06204813.1| DNA topoisomerase IV, B subunit [Yersinia pestis KIM D27]
 gi|294502735|ref|YP_003566797.1| DNA topoisomerase IV subunit B [Yersinia pestis Z176003]
 gi|21960472|gb|AAM87059.1|AE013954_3 DNA topoisomerase IV subunit B [Yersinia pestis KIM 10]
 gi|45437612|gb|AAS63162.1| topoisomerase IV subunit B [Yersinia pestis biovar Microtus str.
           91001]
 gi|108774339|gb|ABG16858.1| DNA topoisomerase IV subunit B [Yersinia pestis Nepal516]
 gi|115346472|emb|CAL19345.1| topoisomerase IV subunit B [Yersinia pestis CO92]
 gi|145209456|gb|ABP38863.1| DNA topoisomerase IV subunit B [Yersinia pestis Pestoides F]
 gi|149289708|gb|EDM39785.1| topoisomerase IV subunit B [Yersinia pestis CA88-4125]
 gi|152962027|gb|ABS49488.1| DNA topoisomerase IV, B subunit [Yersinia pseudotuberculosis IP
           31758]
 gi|162353084|gb|ABX87032.1| DNA topoisomerase IV, B subunit [Yersinia pestis Angola]
 gi|165912207|gb|EDR30845.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165923116|gb|EDR40267.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165992325|gb|EDR44626.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166206768|gb|EDR51248.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166963061|gb|EDR59082.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167055845|gb|EDR65626.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|169749444|gb|ACA66962.1| DNA topoisomerase IV, B subunit [Yersinia pseudotuberculosis YPIII]
 gi|229682228|gb|EEO78320.1| topoisomerase IV subunit B [Yersinia pestis Nepal516]
 gi|229690157|gb|EEO82214.1| topoisomerase IV subunit B [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229696928|gb|EEO86975.1| topoisomerase IV subunit B [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229705473|gb|EEO91483.1| topoisomerase IV subunit B [Yersinia pestis Pestoides A]
 gi|262360767|gb|ACY57488.1| DNA topoisomerase IV subunit B [Yersinia pestis D106004]
 gi|262364712|gb|ACY61269.1| DNA topoisomerase IV subunit B [Yersinia pestis D182038]
 gi|270336243|gb|EFA47020.1| DNA topoisomerase IV, B subunit [Yersinia pestis KIM D27]
 gi|294353194|gb|ADE63535.1| DNA topoisomerase IV subunit B [Yersinia pestis Z176003]
 gi|320016769|gb|ADW00341.1| topoisomerase IV subunit B [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 631

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 249/648 (38%), Positives = 358/648 (55%), Gaps = 26/648 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
              +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  I+V
Sbjct: 2   TESSYNADAIEVLSGLEPVRRRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHARRIDV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGI
Sbjct: 59  ILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS  + VTV R + I+S  F  G  +  L+      +   GT + F PD   F  
Sbjct: 118 SVVNALSKRVEVTVRRDSQIYSIAFENGDKVQDLQVIGTCGKRNTGTSVHFWPDVSFFDS 177

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F  +RL  + ++KA L   V+  +       E       + + +  GL  YL   + 
Sbjct: 178 PR-FSVSRLSHLLKAKAVLCPGVEIVFKDQVNNTE-------QRWCYADGLTDYLMEAVN 229

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336
               +    F G           ++WA+ W  E  E    SY N I T +GGTH +GLR 
Sbjct: 230 GFITLPEAPFVGSFAGDTE---AIDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 286

Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            L   ++ + E      R + + +DD+      +LSV +++P+FAGQTK +L S      
Sbjct: 287 GLLDAMRDFCEYRNILPRGVKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 346

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           V   ++D F  +L QN   A +L E  I  ++ R+R    ++V RK       LPGKLAD
Sbjct: 347 VSGVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C+      TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D
Sbjct: 405 CTSQDLSLTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 464

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  A+G    S+     LRY KV I+ DAD DG HIA+LL   F +    L+   H+++ 
Sbjct: 465 ISVAIGIDPDSEDL-SQLRYGKVCILADADSDGLHIATLLCALFVRHFRALVRNGHVYVA 523

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+RI  G +  YA DEE K  +LE+ K+  +GK  + RFKGLGEM   QL+ET +D 
Sbjct: 524 MPPLYRIDLGKEVFYALDEEEKAGVLEQLKRK-RGKPNVQRFKGLGEMNPLQLRETTLDP 582

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           N R L+++ I+ D          ++ L+  K +++R  ++QE+    +
Sbjct: 583 NTRRLVQLTISDDDIDHTLA--VMDMLLAKKRSEDRRNWLQEKGDTAE 628


>gi|251791330|ref|YP_003006051.1| DNA topoisomerase IV subunit B [Dickeya zeae Ech1591]
 gi|247539951|gb|ACT08572.1| DNA topoisomerase IV, B subunit [Dickeya zeae Ech1591]
          Length = 631

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 250/649 (38%), Positives = 363/649 (55%), Gaps = 27/649 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  I+V L
Sbjct: 4   SSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARRIDVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGISV
Sbjct: 61  HPDQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + VTV R   ++   F  G  +  L       R   GTR+ F PD   F    
Sbjct: 120 VNALSTRVEVTVRRDGQVYDIAFENGDKVQELTVTGTCGRRNTGTRVHFWPDASFFDSPR 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L  + ++KA L   V+  +       E       + + + GGL  YL   +   
Sbjct: 180 -FSVLSLTHLLKAKAVLCPGVEIVFKDGVNDTE-------QRWCYQGGLSDYLCEAVNGL 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +  + F             VEWA+ W  E  E  + SY N I T +GGTH +GLR  L
Sbjct: 232 PTLPEKPFVAAIPGDTE---AVEWALLWLPEGGELLMESYVNLIPTLQGGTHVNGLRQGL 288

Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E      R + + ++D+      +LS+ +++P+FAGQTK +L S  +   V 
Sbjct: 289 LDAMREFCEFRNILPRGVKLSAEDIWERCAYVLSLKMQDPQFAGQTKERLSSRQSAAFVS 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             ++D F  +L QN   A +L E  I  ++ R+R    ++V RK       LPGKLADC+
Sbjct: 349 GVVKDAFSLWLNQNVQAAEQLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADCT 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+ 
Sbjct: 407 SQDLSKTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S+     LRY K+ I+ DAD DG HIA+LL   F +    L+   H+++  P
Sbjct: 467 VAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVRGGHVYVAMP 525

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G +  YA DEE K  ILE+ K+  KGK  + RFKGLGEM   QL+ET +D N 
Sbjct: 526 PLYRIDLGKEVYYALDEEEKAGILEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPNT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDVG 685
           R L+++ IN+    ++ T  +++ L+  K +++R  ++QE+    + + 
Sbjct: 585 RRLVQLTINE--QDIEQTLATMDMLLAKKRSEDRRNWLQEKGDKAE-LD 630


>gi|256825419|ref|YP_003149379.1| DNA topoisomerase IV subunit B [Kytococcus sedentarius DSM 20547]
 gi|256688812|gb|ACV06614.1| DNA topoisomerase IV subunit B [Kytococcus sedentarius DSM 20547]
          Length = 710

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 230/705 (32%), Positives = 345/705 (48%), Gaps = 60/705 (8%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
            A A+ +++ +YDA  +++LEGLE VR RPGMYIG TD + L H   E+IDN++DE + G
Sbjct: 5   TAKASTTSTSSYDARHLQVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALGG 64

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           +A  ++V+L  +G + V D+GRG+PV+  P+    + +E++ T LHAGGKF   +Y  SG
Sbjct: 65  FATGVDVTLHADGSVEVADDGRGVPVDIEPR-SGLTGVELVYTKLHAGGKFGGGSYTASG 123

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP----------------------L 190
           GLHGVG SVVNALS  L V V R    +   F RG P                       
Sbjct: 124 GLHGVGASVVNALSSRLDVEVDRGGKTWVMSFRRGEPGVFDDAGGEPSPDNPFTPFTTGS 183

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
             +E+ +  R   GTR+ +  DP+IF   A F   +L    +  ++L   ++   +  + 
Sbjct: 184 ELIERGKTKRGVTGTRVRYWADPQIFLADAEFSHRQLTDRARQTSFLVPGLRIGLTDKRR 243

Query: 251 IAEKYGI--PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE--------------- 293
           I    G      E F   GG+  ++     ++++  +    G                  
Sbjct: 244 IPGTPGETATHTETFLHSGGITEFVDYLAPDQAVTDTWRLQGTGTFTETVPVLDDAGHMV 303

Query: 294 -KKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRGIKKY---AEL 348
             +      V+ A+ W         S+ N I T +GGTH +G   AL + ++K       
Sbjct: 304 PTEVERDCEVDIALRWGTGYDAVQRSFVNIIATPKGGTHVAGFEQALLKVVRKQVEANSR 363

Query: 349 TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
                   +  DD +     +++V + EP+F GQTK  L +   +  V   +        
Sbjct: 364 KLKPGKDKVEKDDALAGLTAVVTVRLAEPQFEGQTKEVLGTSAVRSIVSKGVETELTEIF 423

Query: 409 VQNPIEATKL----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHG 463
             +     +     LE ++   + R+  R  +E   RK A+    LP KL DC       
Sbjct: 424 TSSARGRKQQAGAVLEKIVTEMKSRVSARMHKETQRRKNALETSSLPTKLVDCRSTETEA 483

Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523
           +ELFIVEGDSA G+AK AR    QA+LP+RGKILN   A    +  N++   ++Q++G  
Sbjct: 484 SELFIVEGDSALGTAKLARQSDFQALLPIRGKILNTQKASVADMLGNEECAAIIQSIGAG 543

Query: 524 TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT 583
           +   +     RY K+IIMTDADVDGAHI +LLLT F++ M  +++   +F   PPL RI 
Sbjct: 544 SGRSFDLASARYGKIIIMTDADVDGAHIRTLLLTLFFRYMRPMVDAGRVFAAVPPLHRIE 603

Query: 584 -----QGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANK 637
                +    VY + E H +K L   K++G+  K  + R+KGLGEM A QL ET MD   
Sbjct: 604 VVNRGKANDYVYTYSEAHLRKELARLKRNGRTLKDPLQRYKGLGEMDADQLAETTMDPAH 663

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           RTL R+ +       +  +D  N LMG+    R +FI   A+ +D
Sbjct: 664 RTLRRITM----RDAQVGEDVFNLLMGSDVAPRKEFIISNAATLD 704


>gi|167625558|ref|YP_001675852.1| DNA topoisomerase IV subunit B [Shewanella halifaxensis HAW-EB4]
 gi|167355580|gb|ABZ78193.1| DNA topoisomerase IV, B subunit [Shewanella halifaxensis HAW-EB4]
          Length = 631

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 242/646 (37%), Positives = 355/646 (54%), Gaps = 26/646 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ Y + +I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AG+A+ I+
Sbjct: 3   AMTNQYTSDAIEVLNGLDPVKRRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHASRID 59

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V L  +  L V D+GRG+PV+ HP+      +E+ILT LHAGGKF N  Y+ SGGLHGVG
Sbjct: 60  VILHADNSLEVTDDGRGMPVDIHPE-EGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVG 118

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFG 217
           ISVVNALS  + +TV R   ++   F  G  +  L       R   GT + F PDP  F 
Sbjct: 119 ISVVNALSSRVEITVRRNAEVYEMAFEHGEKVEDLHVTGTCGRRNTGTSVHFWPDPSYFD 178

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F  ++L  + ++KA L   ++  +             E +E+++  GL+ YL++ +
Sbjct: 179 SGN-FSISKLTYLLKAKAVLCPGLRIKFVNK-------QTNETQEWFYESGLEDYLKSSI 230

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLR 335
                +    F G            +WAI W  E  +    SY N I T  GGTH +G R
Sbjct: 231 NGVPTLPEVPFVGSFAGN---LEAADWAITWLPEGGDYLNESYVNLIPTPLGGTHVNGFR 287

Query: 336 VALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
             L   ++++ E      R I +  +D+   +  ILS+ +++P+FAGQTK KL S     
Sbjct: 288 QGLLESMREFCEFRNLMPRGIKLTPEDIWDRSTFILSIKMQDPQFAGQTKEKLSSRQCAA 347

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454
            V   +RD F  +L  N  +A  L +  I  +++RL+    ++V RK       LPGKL 
Sbjct: 348 FVSGIVRDAFSLWLNTNTEQAEALADMCINNAQKRLK--AAKKVARKRITSGPALPGKLT 405

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS       ELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     + ++  +Q++ 
Sbjct: 406 DCSGQDPMRGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASQEVH 465

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           D+  A+GC   S     +LRY K+ I+ DAD DG HIA+LL   F +    L+EQ H+++
Sbjct: 466 DISVAIGCDPDSADI-SELRYGKICILADADSDGLHIATLLCALFMKHYRVLVEQGHIYV 524

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAM 633
             PPLFRI  G    YA DE  K  IL+       KGK++++RFKGLGEM   QL+ET M
Sbjct: 525 AMPPLFRIDIGKDVFYALDEAEKNGILDRITAEKRKGKVQVTRFKGLGEMNPLQLRETTM 584

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679
           D N R L+++ I+   +++         L   ++ +R  +++ +  
Sbjct: 585 DPNTRRLVQLTIDDADDTMALMDML---LAKKRSGDRKTWLEAKGD 627


>gi|225020879|ref|ZP_03710071.1| hypothetical protein CORMATOL_00887 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946361|gb|EEG27570.1| hypothetical protein CORMATOL_00887 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 646

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 241/658 (36%), Positives = 360/658 (54%), Gaps = 49/658 (7%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIG T+E+ LHHL  EV+DN++DE +AGYA+ +EV++  +G + V+DNGRGIPVE HP 
Sbjct: 1   MYIGSTNERGLHHLVWEVVDNSVDEAMAGYADKVEVTILADGGIEVIDNGRGIPVEMHP- 59

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
                T+++++T LHAGGKFD+ +Y +SGGLHGVGISVVNALS  +   + R    + Q 
Sbjct: 60  -SGAPTVQVVMTQLHAGGKFDSESYAVSGGLHGVGISVVNALSTRVEADIKRDGKHWYQN 118

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           F+  IP              GT + F PDP++F     F    + +  Q  A+L+  +  
Sbjct: 119 FTNAIPEEL--VAGGPAEGTGTTVRFWPDPEVFETTV-FSFELIARRLQEMAFLNKGLTI 175

Query: 244 CWSCDKEIAEK---------------------------YGIPEKEEFYFPGGLKTYLQTK 276
             +  +   E+                               +K+ FY+P GL+ Y++  
Sbjct: 176 TLTDKRASEEEIELETLAEEIAEGDPETAVEAAEEKVVKKKEKKKTFYYPNGLQDYVEHL 235

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            ++++ I   I + + + +      VE A+ W       + ++ NTI T EGGTHE G R
Sbjct: 236 NKSKTAIHPTIISLEVKGEN---LEVEVAMQWNSGYAQSVHTFANTINTIEGGTHEEGFR 292

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALT  + KYA   +   ++  ++  DD       ++SV + EP+F GQTKTKL + + +
Sbjct: 293 AALTSLMNKYAREHKLLKEKEQNLTGDDCREGLAAVISVRVGEPQFEGQTKTKLGNSEVR 352

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGK 452
             V+ A+ +    +L  NP EA  ++   +  +  R+  RK RE+  RK+A     LPGK
Sbjct: 353 GFVQKAINEHVSDWLDANPAEAKVIINKAVSSAHARVAARKAREMVRRKSATDLGGLPGK 412

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC       +EL+IVEGDSAGGSAK  R+   QA+LPLRGKILNV  A  +K+  N +
Sbjct: 413 LADCRSKDPAKSELYIVEGDSAGGSAKGGRDSMYQAILPLRGKILNVEKARLDKVLKNNE 472

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           +  ++ ALG     ++  + LRY K+++M DADVDG HIA+LLLT  ++ M  LIE+ H+
Sbjct: 473 VQAIITALGTGIHDEFDIQKLRYGKIVLMADADVDGQHIATLLLTLLFRFMPQLIEEGHV 532

Query: 573 FLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIE----ISRFKGLGEMLASQ 627
           FL  PPL+++        +A+ +  + ++L E    G+ KI     I R+KGLGEM AS+
Sbjct: 533 FLAQPPLYKLKWAKGDPGFAYSDNQRDELLAEGLAAGR-KINKDDGIQRYKGLGEMNASE 591

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           L ET +D   R L RV    D+N  +   +  + LMG     R  FI  +A  +  + 
Sbjct: 592 LWETTLDPQVRILRRV----DMNDAQLADELFSILMGDDVAARRSFITRKAKDVRFLD 645


>gi|304413731|ref|ZP_07395175.1| DNA topoisomerase IV subunit B [Candidatus Regiella insecticola
           LSR1]
 gi|304283822|gb|EFL92216.1| DNA topoisomerase IV subunit B [Candidatus Regiella insecticola
           LSR1]
          Length = 647

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 250/646 (38%), Positives = 366/646 (56%), Gaps = 26/646 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AGYA+ I V L
Sbjct: 21  SNYNADAIEVLSGLEPVRRRPGMY---TDTSRPNHLGQEVIDNSIDEALAGYAHRINVIL 77

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L++ D+GRG+PV+ HP+      +E+IL  LHAGGKF N +Y+ SGGLHGVGISV
Sbjct: 78  HADQSLSISDDGRGMPVDLHPE-EGVPAIELILCRLHAGGKFSNKSYQFSGGLHGVGISV 136

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE-KVRNKRGTRITFRPDPKIFGDKA 220
           VNALS  L VTV R   I+   F +G  +  L+      ++  GT + F PD   F    
Sbjct: 137 VNALSRRLEVTVQRNGKIYRIVFEQGNKVQDLQIIGTCTKSHTGTHVHFWPDASFFDSPR 196

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L   +K C+  +    E       + + +  GL  YL   +   
Sbjct: 197 -FSVSRLSHLLKAKAVLCPGIKICFKDEVNNTE-------QRWCYADGLTDYLMESVNGL 248

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +  + F G           ++WA+ W  E  E    SY N I T +GGTH +GLR  +
Sbjct: 249 ITLPKKPFIGTFSA---ATEAIDWALLWLPEGGELLTESYVNLIPTIQGGTHVNGLRQGV 305

Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E      R + + +DD+      +LSV +++P+FAGQTK +L S        
Sbjct: 306 LDAMREFCEFCNILPRGVKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFAS 365

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             ++D F  +L +N   A +L E+V+  ++ RLR    ++V RK  +    LPGKLADCS
Sbjct: 366 GIVKDTFSLWLHKNRSTAEQLAEFVVSNAQRRLR--AAKKVVRKKLMSGPALPGKLADCS 423

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
            N    TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S++I  +Q++ D+ 
Sbjct: 424 SNELSLTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNSWEIASDEILASQEVHDIS 483

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    ++     LRY K+ I+ DAD DG HIA+LL   F +    L+    +++  P
Sbjct: 484 VAIGIDPDNEDL-SQLRYGKICILADADSDGLHIAALLCALFVRHFRSLVRDGRIYVAMP 542

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G +  YA DEE K  ILE+ ++  +GK  + RFKGLGEM   QL+ET +D N 
Sbjct: 543 PLYRIDLGKEVFYALDEEEKTGILEQLQRK-RGKPNVQRFKGLGEMNPLQLRETTLDPNT 601

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++ I+ D          ++ L+  K A++R  ++QE+ +  +
Sbjct: 602 RRLVQLTIDDDNMDHTLA--IMDMLLAKKRAEDRRNWLQEKGNLAE 645


>gi|85713135|ref|ZP_01044168.1| DNA topoisomerase IV subunit B [Idiomarina baltica OS145]
 gi|85693051|gb|EAQ31016.1| DNA topoisomerase IV subunit B [Idiomarina baltica OS145]
          Length = 630

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 247/646 (38%), Positives = 358/646 (55%), Gaps = 28/646 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y + SI +L GLEPV+ RPGMY   TD    +HL  EVIDN++DE +AG+A  I V L 
Sbjct: 3   DYKSDSIEVLNGLEPVQRRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHAKTITVVLH 59

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  L V D+GRG+PV+ HP+      +E+I++ LHAGGKF N  Y+ SGGLHGVGISVV
Sbjct: 60  KDQSLEVTDDGRGMPVDIHPE-EKIPGVELIMSKLHAGGKFSNKNYQFSGGLHGVGISVV 118

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221
           NALS  + +T+ R + ++   F  G  +S L+      +   GTR+ F PD + + D + 
Sbjct: 119 NALSKRVEITIRRDSQVYEMAFENGDKVSELDVTGTCGKRNTGTRVHFWPD-EQYFDSSK 177

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F   +L  + ++KA L   +   +    +  E         +++  GL  YL+  +E   
Sbjct: 178 FSVLKLTHLLRAKAVLCPGLTIRFINHVDGEETS-------WFYEDGLTDYLREAVEEYP 230

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALT 339
            +    F G    K       EWA+ W  E  E    SY N I T  GGTH +GLR  L 
Sbjct: 231 TLPEAPFDGSFVSKTE---AAEWAVTWLPEGGEAVTESYVNLIPTALGGTHVNGLRQGLL 287

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R + +  DD+      ILS+ + +P+FAGQTK +L S  +   V  
Sbjct: 288 EAMREFCEFRNLTPRGVKLTPDDVWERCSYILSLKMEDPQFAGQTKERLSSRQSASFVSG 347

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L ++  +A  L E  I  ++ RL+    ++V RK       LPGKL DCS 
Sbjct: 348 VVKDSFSLWLNEHTEQAEALAELCISNAQRRLK--ASKKVVRKKVTSGPALPGKLTDCSG 405

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
             +  +ELF+VEGDSAGGSAKQAR+R  QAV+PLRGKILN      E+I  +Q+I D+  
Sbjct: 406 QDSERSELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVDPEQILASQEIHDISV 465

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+G    S    + LRY K+ I+ DAD DG HIA+LL   F +    L+E  H+F+  PP
Sbjct: 466 AVGVDPNSVDL-DKLRYNKICILADADSDGLHIATLLCALFVKHFRPLVENGHIFVAMPP 524

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANK 637
           L+RI  G    YA DE  KQ IL+  +    KGK+ + RFKGLGEM    L+ET MD N 
Sbjct: 525 LYRIDVGKDVFYALDEGEKQGILDRIEAEKRKGKVNVQRFKGLGEMNPLTLRETTMDPNT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++ I+      +  ++ ++ L+  K A +R  +++ + +  D
Sbjct: 585 RRLVQLTIDD----AEAMEELMDMLLAKKRAADRRTWLESKGNMAD 626


>gi|293363914|ref|ZP_06610650.1| DNA gyrase, B subunit, C-terminal domain protein [Mycoplasma
           alligatoris A21JP2]
 gi|292552404|gb|EFF41178.1| DNA gyrase, B subunit, C-terminal domain protein [Mycoplasma
           alligatoris A21JP2]
          Length = 637

 Score =  544 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 232/657 (35%), Positives = 344/657 (52%), Gaps = 33/657 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           S ++ Y A +I  L+GLE VR RPGMYIG TD   LHHL  E++DN++DE +AG+AN I 
Sbjct: 2   SNNNTYTAKNITQLKGLEAVRKRPGMYIGSTDVNGLHHLVWEIVDNSIDEALAGFANKIS 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V L  +G +T+ DNGRGIPV        +S +E++ T LHAGGKF+   Y+ SGGLHGVG
Sbjct: 62  VKLGIDGSVTIEDNGRGIPVGK--TESGRSAVELVFTELHAGGKFNEGAYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS ++ VTV R    +  +F +   L   +   K +   GT++ F PD   F  
Sbjct: 120 SSVVNALSTKVVVTVYRDGNEYLTEFCQDKILKKTQVVGKSKKV-GTKVQFWPDYD-FFK 177

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
           +A  +   + +  +   +L   ++     +            E F F  G+  +L    +
Sbjct: 178 RAKLNYDVISERLKESCFLISNLEIKLYDE-------STSTSETFRFSDGIAAFLGFVND 230

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
           ++S I+  I    + K        ++  ++   N  I S+ N + T +GGTHE+GL+ AL
Sbjct: 231 SKSAITQAITFNDSRKGIEVDCGFQYTDSY---NELIVSFVNNVKTRDGGTHETGLKTAL 287

Query: 339 TRGIKKYAELTQNKRAIS-IISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395
           T+    +       +  +     D+      ILS+ + E   EF GQTK KL + DA+  
Sbjct: 288 TKVFNDFGIEEGVLKNKNVFEPSDIREGLSVILSLKVPEKLLEFVGQTKDKLGTPDAKGV 347

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA---IRKLRLPGK 452
           VE  +      +++++   A K+L+ +    E R   +KQR+  RKT      K  L  K
Sbjct: 348 VEELVTKHLKMWIIEHKQLAKKVLDKIKRAYEIRNEEKKQRQELRKTKSILKDKPILSDK 407

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L           ELF+VEGDSAGGSAK  R+R  QA+LPLRGK++NV  +    I  N +
Sbjct: 408 LTPAQSKKPEEKELFLVEGDSAGGSAKSGRDRRYQAILPLRGKVINVEKSKLIDILKNTE 467

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++ ++G     ++     +Y K+IIMTDAD DGAHI  LLLTF Y+ M  LIE   +
Sbjct: 468 IGTIINSIGAGYGKEFDLSKAQYGKIIIMTDADTDGAHIQILLLTFLYRYMKPLIEAGKV 527

Query: 573 FLISPPLFRITQGTK--SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++  PPL++ +   K    YA DE   ++IL +      G  EI R+KGLGEM A QL E
Sbjct: 528 YIALPPLYKASNKAKNLVYYAWDESELKEILSK-----PGSWEIQRYKGLGEMNADQLWE 582

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF--IDDVG 685
           T M+   R++++V +      +   +  ++ LMG  A  R  +I +   F   D+  
Sbjct: 583 TTMNPATRSIIKVTMED----ITLAERRVSTLMGNNASLRKNWIDKHVDFSNEDNFD 635


>gi|82798482|gb|ABB91904.1| DNA gyrase subunit B [Acholeplasma cavigenitalium]
          Length = 588

 Score =  544 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 234/606 (38%), Positives = 339/606 (55%), Gaps = 21/606 (3%)

Query: 58  VRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIP 117
           VR RPGMYIG T     HHL  E++DN++DE +AGYA  I + +     + V D+GRGIP
Sbjct: 1   VRKRPGMYIGTTGSDGFHHLVWEIVDNSIDEALAGYAKEILLEILPGEIIRVSDDGRGIP 60

Query: 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN 177
           V+ HP    +  +E I+TTLH+GGKFD  +Y++SGGLHGVG +VVNALS+   V V R N
Sbjct: 61  VDIHP-HTGRPAVETIMTTLHSGGKFDGESYKVSGGLHGVGAAVVNALSEWFVVEVHRNN 119

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
             + Q F RGIP   LE   +     GT I ++ DP+IF +   +D  RL +  Q  A+L
Sbjct: 120 QAYRQSFKRGIPDGDLEVCGESA-HSGTIIEYKFDPEIFIETTSYDFERLRQRIQQLAFL 178

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  VK   +  ++            + + GGL  Y +     ++ I+ E+F  +      
Sbjct: 179 NRGVKLTIADKRKSEAVEFE-----YLYEGGLVEYAEFLNGGKAKINQELFYTEEMVDDI 233

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAI 355
               +E  I + +     I S+ N I T EGG HE G ++AL R +  YA+  +  K   
Sbjct: 234 ---NIEITIQYNDTYNENIYSFANNIPTREGGMHEDGFKMALRRVLFNYAKDNKLVKEEE 290

Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415
           +   +D+    V I+SV   +P+F GQTKTKL + + +      L+   + +L++NP +A
Sbjct: 291 AFAGEDVREGLVAIISVKHPDPQFEGQTKTKLGNTEVRAITSQVLQSGLERFLLENPNDA 350

Query: 416 TKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSA 474
             ++E   +    R+   K RE  R+   + +L    KLADC    A   EL+IVEGDSA
Sbjct: 351 KAIIEKAKKARLARIAAHKAREQTRRKNPLDQLGFASKLADCRTKDATRAELYIVEGDSA 410

Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
           GGSAKQ R    QA+LPLRGK+LNV  A  E+I NNQ+I+ L QA+G     ++     R
Sbjct: 411 GGSAKQGRESEFQAILPLRGKVLNVEKANIERILNNQEILTLFQAIGTGFGDEFDASKAR 470

Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDE 594
           Y K+IIMTDADVDGAHI +LLLTF Y+ +  LIE  +++   PPL++I+ G +  Y + +
Sbjct: 471 YHKIIIMTDADVDGAHIRTLLLTFLYRYLRPLIELGYIYFAQPPLYKISYGRREEYVYSD 530

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
           +  ++ L+ F +    + +I R+KGLGEM   QL +T M+   RTLLRV +   +    D
Sbjct: 531 QELEETLKTFGE----RYQIQRYKGLGEMNPEQLWDTTMNPETRTLLRVTLKDAM----D 582

Query: 655 TQDSIN 660
                 
Sbjct: 583 ADQVFT 588


>gi|323465562|gb|ADX69249.1| DNA gyrase subunit B [Lactobacillus helveticus H10]
          Length = 613

 Score =  544 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 232/628 (36%), Positives = 346/628 (55%), Gaps = 20/628 (3%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIG T  + LHHL  E+IDN++DE +AG+A  IE++++ +G +TV D+GRGIPV+   K
Sbjct: 1   MYIGSTSSQGLHHLVWEIIDNSIDERLAGFATKIEITVNEDGSVTVQDDGRGIPVDIQKK 60

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
              +  LE + T LHAGGKF    Y++SGGLHGVG SVVNALS +L VTV R    +   
Sbjct: 61  -TGRPALETVFTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDGKKYFID 119

Query: 184 FSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
           F  G     +++   V  ++ GT + F PDP IF +   FD   L    +  A+L+  +K
Sbjct: 120 FDHGRVKDEMKQIGTVPLDQHGTIVHFYPDPDIFTETTTFDDKILKNRIRELAFLNKGLK 179

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
             ++  ++ +      E + + + GG+K Y+    + + ++  E    ++   G     V
Sbjct: 180 LTFTDKRKDS-----AETDVYKYEGGIKEYVAFLNKGQEVLFDEPIYVESTYNGI---DV 231

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359
           E A+ +       + ++ N I T EGG HE+G + ALTR +  YA   +    +  ++  
Sbjct: 232 EVALQYTNGYKTTLMTFANNIHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSG 291

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           +D+      ++SV    P+F GQTKTKL + DA+  V+ +  + F  +L++NP    K++
Sbjct: 292 EDIREGMTAVVSVKHPSPQFEGQTKTKLGNSDARTAVDKSFSETFSRFLMENPSVGRKIV 351

Query: 420 EW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
           E   +        +R +    +K+ +    LPGKLAD + N    +ELFIVEG+SAGGSA
Sbjct: 352 EKGQLAERARTAAKRAREVTRKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSA 411

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538
           KQ R+R  QA+LP+RGKILNV  A  ++I  NQ+I  L  ALG    + +     RY K+
Sbjct: 412 KQGRSRLTQAILPIRGKILNVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKL 471

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQ 598
           IIMTDADVDGAHI +LLLT FY  M  +IE+ ++++  PPL+++ QG    Y   +E   
Sbjct: 472 IIMTDADVDGAHIRTLLLTLFYNYMRPMIEKGYVYIARPPLYQVRQGKVIKYLDTDEELH 531

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
             L   +     K  + R+KGLGEM   QL ET M+   R L RV         KD    
Sbjct: 532 DYLGSLQPS--PKPVVQRYKGLGEMDPEQLWETTMNPENRRLDRVSPEY----AKDADAV 585

Query: 659 INKLMGTKADERFKFIQERASFIDDVGT 686
              LMG +   R  FIQ+ A +++++  
Sbjct: 586 FELLMGNEVAPRRDFIQKNAKYVENLDA 613


>gi|271498905|ref|YP_003331930.1| DNA topoisomerase IV subunit B [Dickeya dadantii Ech586]
 gi|270342460|gb|ACZ75225.1| DNA topoisomerase IV, B subunit [Dickeya dadantii Ech586]
          Length = 631

 Score =  544 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 249/649 (38%), Positives = 363/649 (55%), Gaps = 27/649 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  I+V L
Sbjct: 4   SSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARRIDVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGISV
Sbjct: 61  HPDQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + VTV R   ++   F  G  +  L       R   GTR+ F PD   F    
Sbjct: 120 VNALSTRVEVTVRRDGQVYDIAFENGDKVQDLMVTGTCGRRNTGTRVRFWPDVTFFDSPR 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L  + ++KA L   V+  +       E       + + + GGL  YL   +   
Sbjct: 180 -FSVLSLTHLLKAKAVLCPGVEIVFKDGVNDTE-------QRWCYQGGLSDYLCEAVNGL 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +  + F G           VEWA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 PTLPEKPFVGAIPGDTE---AVEWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGL 288

Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E      R + + ++D+      +LS+ +++P+FAGQTK +L S  +   V 
Sbjct: 289 LDAMREFCEFRNILPRGVKLSAEDIWERCAYVLSLKMQDPQFAGQTKERLSSRQSAAFVS 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             ++D F  +L QN   A +L E  I  ++ R+R    ++V RK       LPGKLADC+
Sbjct: 349 GVVKDAFSLWLNQNVQAAEQLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADCT 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+ 
Sbjct: 407 SQDLSKTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  P
Sbjct: 467 VAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVQGGHVYVAMP 525

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G +  YA DEE K  ILE+ K+  KGK  + RFKGLGEM   QL+ET +D N 
Sbjct: 526 PLYRIDLGKEVYYALDEEEKAGILEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPNT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDVG 685
           R L+++ +++    ++ T  +++ L+  K +++R  ++QE+    + + 
Sbjct: 585 RRLVQLTVSE--QDIEQTMATMDMLLAKKRSEDRRNWLQEKGDKAE-LD 630


>gi|307822419|ref|ZP_07652651.1| DNA topoisomerase IV, B subunit [Methylobacter tundripaludum SV96]
 gi|307736985|gb|EFO07830.1| DNA topoisomerase IV, B subunit [Methylobacter tundripaludum SV96]
          Length = 630

 Score =  544 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 251/648 (38%), Positives = 367/648 (56%), Gaps = 27/648 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S+ Y+A++I +L GLEPVR RPGMY   TD    +HL  EV+DN++DE +AG+A  I+V 
Sbjct: 2   SNEYNAAAIEVLSGLEPVRKRPGMY---TDTTRPNHLVQEVVDNSVDEAMAGHATAIDVV 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +G + V DNGRG+PV+ HP+      +E+ILT LHAGGKF N  Y+ SGGLHGVG+S
Sbjct: 59  LYKDGSVLVSDNGRGMPVDIHPEQ-GIPGVEVILTQLHAGGKFSNKNYQFSGGLHGVGVS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS +L V V R   I+   ++ G   + L +   V +N  GT I F P+ + + D 
Sbjct: 118 VVNALSAKLEVEVKRNGKIYRMDYADGEKQTELVETGTVGKNNTGTSIRFWPN-EKYFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
                 +L  + ++KA L   +K     D          E+  + +  GLK YL  ++ +
Sbjct: 177 NKISVLKLKHVLRAKAVLCPGLKISLKVD-------QTDEEYFWCYQDGLKEYLLDRIGD 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI---TSYCNTILTDEGGTHESGLRV 336
                 + F G           VEW I W  ENP      SY N + T +GGTH +GLR 
Sbjct: 230 IDYCPEQPFMGNMAAN---HEAVEWGIVWAIENPAEVLAESYVNLVPTAQGGTHVNGLRA 286

Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            LT  ++++ ++     R + +  +D+  +   +LSV + +P+F+GQTK +L S +    
Sbjct: 287 GLTEAMREFCDIRNILPRGVKVAPEDVWENCHFVLSVKLEDPQFSGQTKERLSSRECVAF 346

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           V    +D F  +L QNP E  K+ E +I  +++RLR    +++ RK       LPGKLAD
Sbjct: 347 VSGVAKDSFSLWLNQNPAEGEKIAEIIISSAQKRLRSN--KKIIRKKITSGPALPGKLAD 404

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS      TELF+VEGDSAGGSAKQAR R  QA++PLRGKILN     S ++  +Q++ D
Sbjct: 405 CSAQDIARTELFLVEGDSAGGSAKQARERDFQAIMPLRGKILNTWEVESNQVMASQEVHD 464

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  ALG    S    ++LRY KV I+ DAD DG HIA+L+   FYQ    L+   H+F+ 
Sbjct: 465 IAVALGIEPGSSDL-QNLRYGKVCILADADSDGNHIATLICALFYQHFNALVVAGHVFVA 523

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMD 634
            PPL+RI  G +  YA DE  +Q +L+       KG+I + RFKGLGEM  SQL+ET M+
Sbjct: 524 MPPLYRIDVGKRVFYALDEAERQGVLDRITAEKLKGQINVQRFKGLGEMNPSQLRETTMN 583

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            + R L+++ + +D ++          L   ++ +R  +++ + +  D
Sbjct: 584 PDTRRLVQLTVLEDDDTNGQLDLL---LAKKRSQDRKVWLETKGNLAD 628


>gi|165976673|ref|YP_001652266.1| DNA topoisomerase IV subunit B [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165876774|gb|ABY69822.1| DNA topoisomerase IV subunit B [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 637

 Score =  544 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 252/650 (38%), Positives = 371/650 (57%), Gaps = 28/650 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y A  I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE ++GYA+ I+V L
Sbjct: 4   KRYGADEITVLKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALSGYASQIDVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V+DNGRG+PV+ H      S +E+I+T LHAGGKF N  Y  SGGLHGVGISV
Sbjct: 61  HADNSLEVIDNGRGMPVDIHS-TEKISGVELIMTKLHAGGKFSNKNYTFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + + + R   I++  F  G+ +  L       + + GT + F P+PK F    
Sbjct: 120 VNALSQRVEIKIKRNGEIYTIAFENGVKVEELTVIGSCPKKQTGTTVRFYPNPKYFDSPR 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L  ++   +         +     E +Y+  GL  YL   L+  
Sbjct: 180 -FSVSRLRHLLRAKAVLCPKLTINFVD-------HINNNSETWYYEDGLSDYLSEALKEF 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             + +  F G    +      V WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 ECLPNPPFIGDVISETE---AVSWALTWLPEGGELVAESYVNLIPTAQGGTHVNGLRNGL 288

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
            + + ++ E+     +++ + +DD+      +LS+ I+EP+FAGQTK +L S  A   V+
Sbjct: 289 LKAMVEFCEIHNLLPKSVKLTTDDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVD 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
           + ++D F  +L QN      + E  I  ++ RLR    ++V RK  +    LPGKLADC+
Sbjct: 349 STIKDAFSLWLNQNVQTGKLIAEMAISSAQSRLR--AAKKVVRKKLVSGPALPGKLADCT 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
               + TELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN     S+++  +Q++ D+ 
Sbjct: 407 SQDLNRTELFLVEGDSAGGSAKQARDKDYQAILPLRGKILNTWEVSSDQVLASQEVHDIA 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG    S    E+LRY KV I+ DAD DG HIA+LL   F +   +L++  H+++  P
Sbjct: 467 VALGIDPDSDSL-EELRYGKVCILADADSDGLHIATLLCALFLRHFPNLVKNGHVYVAMP 525

Query: 578 PLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PL+RI  G  +  YA DE  K+ IL    K  KGK  + RFKGLGEM  SQL+ET MD +
Sbjct: 526 PLYRIDIGKDEVHYALDEAEKEAILARLAKK-KGKPNVQRFKGLGEMNPSQLRETTMDPS 584

Query: 637 KRTLLRVEINK---DLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ +++      +  DT + ++ L+  K A++R +++Q R    +
Sbjct: 585 TRRLVQLTLDELDVAEENEPDTFEIMDMLLAKKRAEDRKQWLQNRGDEAE 634


>gi|300724859|ref|YP_003714184.1| DNA topoisomerase IV subunit B [Xenorhabdus nematophila ATCC 19061]
 gi|297631401|emb|CBJ92098.1| DNA topoisomerase IV, subunit B [Xenorhabdus nematophila ATCC
           19061]
          Length = 631

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 247/646 (38%), Positives = 366/646 (56%), Gaps = 26/646 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  IEV L
Sbjct: 4   SSYNAEAIEVLSGLEPVRRRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHAKHIEVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V+D+GRG+PV+ HP+    S +E+ILT LHAGGKF N  Y+ SGGLHGVGISV
Sbjct: 61  HSDQSLEVIDDGRGMPVDIHPE-EKVSAVELILTRLHAGGKFSNKNYQFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + VTV R + +    F  G  +  L+      +   GT + F PD + + D  
Sbjct: 120 VNALSKRVEVTVRRYSQVHQIAFENGEKVQELDVIGSCGKRNTGTSVHFWPD-ESYFDIP 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F   RL  + ++KA L   V+  +       E       +++ +  GL  YL   +   
Sbjct: 179 RFSVTRLTHLLKAKAVLCPGVEIVFKDKLNGTE-------QKWCYADGLTDYLLEAVNGL 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +    F G    +       +WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 VTLPQSPFVGTFSGETE---AADWAVLWLPEGGELLAESYVNLIPTVQGGTHVNGLRQGL 288

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E      R + + +DD+      +LS+ +++P+FAGQTK +L S  +   V 
Sbjct: 289 LDAMREFCEFRNLLPRGVKLSADDIWDRCAYVLSLKMQDPQFAGQTKERLSSRQSAAFVS 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             ++D F  +L Q+  +A +L E  I  ++ R+R    ++V RK       LPGKLADC+
Sbjct: 349 GVVKDAFSLWLNQHTQDAEQLAEMAIASAQRRMR--AAKKVVRKKLTNGPALPGKLADCT 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
               + TELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     S+++  +Q++ D+ 
Sbjct: 407 AQDLNITELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVSSDEVLASQEVHDIS 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L+++ H+++  P
Sbjct: 467 VAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFPTLVKRGHVYMAMP 525

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G +  YA DE  K  IL+   +  +GK  + RFKGLGEM   QL+ET +D N 
Sbjct: 526 PLYRIDLGKEVHYALDEGEKSAILDRLSRK-RGKPNVQRFKGLGEMNPIQLRETTLDPNT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++ I+    + ++T   ++ L+  K +++R  ++QE+   I+
Sbjct: 585 RRLVQLTIDD--ENYQETLSVMDMLLAKKRSEDRRNWLQEKGDSIN 628


>gi|170719135|ref|YP_001784282.1| DNA topoisomerase IV subunit B [Haemophilus somnus 2336]
 gi|168827264|gb|ACA32635.1| DNA topoisomerase IV, B subunit [Haemophilus somnus 2336]
          Length = 630

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 252/644 (39%), Positives = 362/644 (56%), Gaps = 23/644 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY A  I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE +AG+A  IEV L 
Sbjct: 3   NYSAQEITVLKDLEPVQLRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHATKIEVILY 59

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  L V+DNGRG+PV+ HP     S +E+ILT LHAGGKF N  YE +GGLHGVGISVV
Sbjct: 60  KDQSLEVIDNGRGMPVDIHP-TEKVSGVEVILTKLHAGGKFSNKHYEFAGGLHGVGISVV 118

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221
           NALS+ + + V R   I+   F  G+ +  LE      +   GT + F+P+PK F     
Sbjct: 119 NALSERVDIQVKRNGEIYKIAFENGVKVEELEIIGTCGKRTTGTSVHFKPNPKYFDSAN- 177

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F  +RL  + ++KA L   ++  +       E         + +  GL  YL   +   +
Sbjct: 178 FSVSRLRHLLRAKAVLCSGLEIKFIDKINNTEDT-------WLYQDGLSDYLMENVNGYN 230

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALT 339
           L+    F G      T++    WA+ W  E  E    SY N I T +GGTH +GLR  L 
Sbjct: 231 LLPQNPFVGNFS---TNKEAASWALLWLPEGGELLNESYVNLIPTIQGGTHVNGLRQGLL 287

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      + + + +DD+      +LSV + + +FAGQTK +L S  +   V  
Sbjct: 288 DAMREFCEFRNLLPKNVKLTADDIWDRCAYVLSVKMHDAQFAGQTKERLSSRQSAVFVGG 347

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L QN  +A +L + VI  +E RLR    ++V RK  +    LPGKLADCS+
Sbjct: 348 VVKDSFSLWLNQNIQDAEELAKMVISSAERRLR--AAKKVVRKKLVSGPALPGKLADCSE 405

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TELF+VEGDSAGGSAKQARNR +QA+LPLRGKILN      +++  +Q++ D+  
Sbjct: 406 QDLSKTELFLVEGDSAGGSAKQARNREHQAILPLRGKILNTWEVSPDQVLRSQEVHDIAI 465

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG    ++     LRY KV I+ DAD DG HIA+LL   F +    L++  H+++  PP
Sbjct: 466 ALGIDPDNEDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQHGHVYVAMPP 524

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+RI  G +  YA DE  K+ IL    K+ +GK+ + RFKGLGEM  +QL+ET MD N R
Sbjct: 525 LYRIDLGNEVFYALDENEKESILARL-KNKRGKLNVQRFKGLGEMNPNQLRETTMDPNTR 583

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            L+++        +   +     L   ++++R  ++Q     +D
Sbjct: 584 RLVQLTYEPHEEDVSTLELMDMLLAKKRSEDRKIWLQNNGDQVD 627


>gi|251792940|ref|YP_003007666.1| DNA topoisomerase IV subunit B [Aggregatibacter aphrophilus NJ8700]
 gi|247534333|gb|ACS97579.1| DNA topoisomerase IV, B subunit [Aggregatibacter aphrophilus
           NJ8700]
          Length = 632

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 253/647 (39%), Positives = 365/647 (56%), Gaps = 24/647 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + NY A+ I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE +AG+A+ IEV 
Sbjct: 2   TTNYSANEITVLKDLEPVQLRPGMY---TDTTRPNHLAQEVIDNSVDEALAGFASKIEVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  N  + V+DNGRG+PV+ HP     S +E+I++ LHAGGKF N  Y  SGGLHGVGIS
Sbjct: 59  LHKNQSIEVIDNGRGMPVDIHP-VEKVSGVEVIMSKLHAGGKFSNKNYTFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS+ + V++ R   ++   F  G  +  L       R   GT + F+P+PK F  +
Sbjct: 118 VVNALSERVDVSIKRNGEVYKIAFENGKKVEDLTVIGICGRRTTGTTVHFKPNPKYFDSE 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL  + ++KA L   ++  +       E         + +  GL  YL   +  
Sbjct: 178 -KFSVSRLRHLLRAKAVLCSGLEIKFIDKVNDTEDT-------WLYQDGLNDYLMEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G+ + +   +  V WA+ W  E  E    SY N I T  GGTH +GLR  
Sbjct: 230 LVTLPEQPFIGEFKGE---KEAVSWALLWLPEGGELIGESYVNLIPTALGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++K+ E      R + + +DDL      +LS+ +++P+FAGQTK +L S  +   +
Sbjct: 287 LLDAMRKFCEFRNLLPRGVKLTADDLWDRCAYVLSLKMQDPQFAGQTKERLSSRQSAMFI 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A  L +  I  ++ RLR    ++V RK  +    LPGKLADC
Sbjct: 347 GGVVKDAFSLWLNQNIQTAELLADMAISSAQRRLRAT--KKVVRKKLVSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S    + TELF+VEGDSAGGSAKQAR R  QA+LPLRGKILN      E++  +Q++ D+
Sbjct: 405 SSQDLNLTELFLVEGDSAGGSAKQAREREYQAILPLRGKILNTWEVSPEQVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             ALG    +      LRY KV I+ DAD DG HIA+LL   F +    L+EQ H+++  
Sbjct: 465 AVALGIDPDNDDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVEQGHVYVAM 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G    YA DE  K+ IL+  K   KGK  + RFKGLGEM   QL+ET MD +
Sbjct: 524 PPLYRIDLGKDVFYALDESEKEAILDRLKGK-KGKPNVQRFKGLGEMNPMQLRETTMDPS 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++         ++T ++++ L+  K A++R  ++Q +   +D
Sbjct: 583 TRRLVQLTFEAQGEESQETMETMDMLLAKKRAEDRKNWLQAKGDQVD 629


>gi|156888537|gb|ABU96673.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 621

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 252/624 (40%), Positives = 361/624 (57%), Gaps = 20/624 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +  +  YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A  I
Sbjct: 9   EEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFATHI 68

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +  +TVVDNGRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGV
Sbjct: 69  QVFIEADNSITVVDNGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS +L V V +   I  Q+F RG  ++ LE          T + F PDP+IF 
Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVIGTTDVTG-TTVHFTPDPEIFT 186

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   FD   L K  Q  A+L+  +K   +  +   E     ++E F++ GG+ +Y++   
Sbjct: 187 ETTEFDYKVLAKRIQELAFLNRGLKISITDKRSGME-----QEEHFHYEGGIGSYVEFLN 241

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           + + +I         E +G     VE A+ +       + S+ N I T EGGTHE G R 
Sbjct: 242 DKKDVIFETPIYTDGELEGI---AVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRA 298

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA+  +   +   ++  +D+      ++SV    P+F GQTKTKL + +  +
Sbjct: 299 ALTRVINDYAKKNKILKENDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKL 453
                  + F  +L++NP  A K++E  I  S+ R+  ++ REV RK +      LPGKL
Sbjct: 359 ITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGWEISNLPGKL 418

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS N A   ELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I
Sbjct: 419 ADCSSNDASQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 478

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             L  A+G    + +     RY+KV+IMTDADVDGAHI +LLLT  Y+ M  ++E  +++
Sbjct: 479 RSLFTAMGTGFGADFDVSKARYQKVVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVY 538

Query: 574 LISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           +  PP++ +  G++   Y       EE  +  LE++   G+ K  + R+KGLGEM   QL
Sbjct: 539 IAQPPIYGVKVGSEIKEYIQPGIEQEEQLKTALEKYS-VGRSKPTVQRYKGLGEMDDHQL 597

Query: 629 KETAMDANKRTLLRVEINKDLNSL 652
            ET MD   R + RV ++    + 
Sbjct: 598 WETTMDPENRLMARVTVDDAAEAD 621


>gi|307252887|ref|ZP_07534776.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306859676|gb|EFM91700.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 637

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 252/650 (38%), Positives = 370/650 (56%), Gaps = 28/650 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y A  I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE ++GYA+ I+V L
Sbjct: 4   KRYGADEITVLKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALSGYASQIDVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V+DNGRG+PV+ H      S +E+I+T LHAGGKF N  Y  SGGLHGVGISV
Sbjct: 61  HADNSLEVIDNGRGMPVDIHS-TEKISGVELIMTKLHAGGKFSNKNYTFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + + + R   I++  F  G+ +  L       + + GT + F P+PK F    
Sbjct: 120 VNALSQRVEIKIKRNGEIYTIAFENGVKVEELTVIGSCPKKQTGTTVRFYPNPKYFDSPR 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L  ++   +         +     E +Y+  GL  YL   L+  
Sbjct: 180 -FSVSRLRHLLRAKAVLCPKLTINFVD-------HINNNSETWYYEDGLSDYLSEALKEF 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             + +  F G    +      V WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 ECLPNPPFIGDVISETE---AVSWALTWLPEGGELVAESYVNLIPTAQGGTHVNGLRNGL 288

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
            + + ++ E+     +++ + +DD+      +LS+ I+EP+FAGQTK +L S  A   V+
Sbjct: 289 LKAMVEFCEIHNLLPKSVKLTTDDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVD 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
           + ++D F  +L QN      + E  I  ++ RLR    ++V RK  +    LPGKLADC+
Sbjct: 349 STIKDAFSLWLNQNVQTGKLIAEMAISSAQSRLR--AAKKVVRKKLVSGPALPGKLADCT 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN     S+++  +Q++ D+ 
Sbjct: 407 SQDLSRTELFLVEGDSAGGSAKQARDKDYQAILPLRGKILNTWEVSSDQVLASQEVHDIA 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG    S    E+LRY KV I+ DAD DG HIA+LL   F +   +L++  H+++  P
Sbjct: 467 VALGIDPDSDSL-EELRYGKVCILADADSDGLHIATLLCALFLRHFPNLVKNGHVYVAMP 525

Query: 578 PLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PL+RI  G  +  YA DE  K+ IL    K  KGK  + RFKGLGEM  SQL+ET MD +
Sbjct: 526 PLYRIDIGKDEVHYALDEAEKEAILARLAKK-KGKPNVQRFKGLGEMNPSQLRETTMDPS 584

Query: 637 KRTLLRVEINK---DLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ +++      +  DT + ++ L+  K A++R +++Q R    +
Sbjct: 585 TRRLVQLTLDELDVAEENEPDTFEIMDMLLAKKRAEDRKQWLQNRGDEAE 634


>gi|261344789|ref|ZP_05972433.1| hypothetical protein PROVRUST_06054 [Providencia rustigianii DSM
           4541]
 gi|282567234|gb|EFB72769.1| DNA topoisomerase IV, B subunit [Providencia rustigianii DSM 4541]
          Length = 631

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 252/646 (39%), Positives = 361/646 (55%), Gaps = 26/646 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y+A  I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  IEV L
Sbjct: 4   SSYNAEDIEVLSGLEPVRRRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHAGHIEVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V+DNGRG+PV+ HP+    S +E+IL  LHAGGKF N  Y+ SGGLHGVGISV
Sbjct: 61  YPDQSLEVIDNGRGMPVDIHPEM-KVSAVELILGQLHAGGKFSNKNYQFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + VTV R   ++   F  G  +  L       +   GT + F PD   F    
Sbjct: 120 VNALSKRIEVTVRRDGQVYQIAFENGDKVEDLHVIGTCGKRNTGTSVHFWPDVSYFDSPR 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL    ++KA L   V+  +       E       + + +  GL  YL   ++  
Sbjct: 180 -FSVSRLTHNLKAKAVLCPGVQITFKDLLNETE-------QSWCYSDGLTDYLMESVDGY 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +  + FTG+   +       +WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 ETLPVKPFTGELSGEVE---AAQWALLWLPEGGELLTESYVNLIPTAQGGTHVNGLRQGL 288

Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V 
Sbjct: 289 LDAMREFCEFRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             ++D F  +L QN   A +L E  I  ++ RLR    ++V RK       LPGKLADCS
Sbjct: 349 GVVKDAFSLWLNQNVQVAEQLAEMAISSAQRRLR--ASKKVVRKKLTSGPALPGKLADCS 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     S+++  +Q++ D+ 
Sbjct: 407 SQDLSMTELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVSSDEVLASQEVHDIS 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S+     LRY KV I+ DAD DG HIA+LL   F +    L+ + H+++  P
Sbjct: 467 VAIGMDPDSEDM-SQLRYGKVCILADADSDGLHIATLLCALFVRHFPKLVREGHVYMAMP 525

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G ++ YA DE  K  +L+   +  KGK  + RFKGLGEM   QL+ET +D N 
Sbjct: 526 PLYRIDLGKETHYALDESEKNAVLDRLSRK-KGKPNVQRFKGLGEMNPPQLRETTLDPNT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++ I+ D  +  +T   ++ L+  K +++R  ++QE+    +
Sbjct: 585 RRLVQLTIDDDNYT--ETMSMMDMLLAKKRSEDRRNWLQEKGDTAE 628


>gi|219872242|ref|YP_002476617.1| DNA topoisomerase IV subunit B [Haemophilus parasuis SH0165]
 gi|219692446|gb|ACL33669.1| DNA topoisomerase 4 subunit B [Haemophilus parasuis SH0165]
          Length = 633

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 253/650 (38%), Positives = 376/650 (57%), Gaps = 26/650 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           +   Y A  I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE ++G+AN I+V
Sbjct: 2   SEKRYGADEITVLKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALSGFANQIDV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +  L VVDNGRG+PV+ H      S +E+ILT LHAGGKF N  Y  SGGLHGVGI
Sbjct: 59  ILHSDNSLEVVDNGRGMPVDIHS-TEKISGVELILTKLHAGGKFSNKNYTFSGGLHGVGI 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS+ + +T+ R   I++  F+  + +  L+      + + GT + F P+PK F  
Sbjct: 118 SVVNALSESVEITIKRNGEIYTIAFANSVKVEELKVIGSCPKRQTGTTVRFYPNPKYFDS 177

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F  +RL  + ++KA L  ++   ++        +    +E +Y+  GL+ YL   L+
Sbjct: 178 P-KFSVSRLRHLLRAKAVLCPKLTINFTD-------HINNTQETWYYEDGLRDYLTDALK 229

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRV 336
               + + +F G+   +      V WA++W  E  E    SY N I T  GGTH +GLR 
Sbjct: 230 EYEYLPNPLFVGEVIGETE---AVSWALSWLTEGGEQINESYVNLIPTALGGTHVNGLRQ 286

Query: 337 ALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            L + + ++ +      + + + +DD+      +LS+ ++EP+FAGQTK +L S  A   
Sbjct: 287 GLFKAMAEFCDFRNLLPKGVKLTADDVWGRCCYVLSLKMQEPQFAGQTKERLSSRQAASY 346

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           VEN+++D F  +L QN   A +L E  I  ++ RLR   +++V RK  +    LPGKLAD
Sbjct: 347 VENSVKDAFSLWLNQNVQVAEQLAEMAISSAQNRLR--AEKKVVRKKLVSGPALPGKLAD 404

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C       TELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN      +++  + ++ D
Sbjct: 405 CISQDLTRTELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVSPDQVLASTEVHD 464

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  ALG    ++     LRY KV I+ DAD DG HIA+LL   F +    L++  H+++ 
Sbjct: 465 IAVALGIDPDNEDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPTLVKNGHVYVA 523

Query: 576 SPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
            PPL+RI  G  +  YA DE  K+ IL    K  KGK  + RFKGLGEM  SQL+ET MD
Sbjct: 524 MPPLYRIDIGKDEVHYALDESEKEAILARLAKK-KGKPNVQRFKGLGEMNPSQLRETTMD 582

Query: 635 ANKRTLLRVEINKDLNSLK-DTQDSINKLMGTK-ADERFKFIQERASFID 682
            N R L+++ +  + +  +  T + ++ L+  K A++R +++Q+R    D
Sbjct: 583 PNTRRLVQLTLEDNSDDEEVSTFELMDMLLAKKRAEDRKQWLQDRGDEAD 632


>gi|156888535|gb|ABU96672.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|156888539|gb|ABU96674.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 621

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 251/624 (40%), Positives = 361/624 (57%), Gaps = 20/624 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +  +  YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A  I
Sbjct: 9   EEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFATHI 68

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +  +TVVDNGRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGV
Sbjct: 69  QVFIEADNSITVVDNGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS +L V V +   I  Q+F RG  ++ LE          T + F PDP+IF 
Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVIGTTDVTG-TTVHFTPDPEIFT 186

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   FD   L K  Q  A+L+  +K   +  +   E     ++E F++ GG+ +Y++   
Sbjct: 187 ETTEFDYKVLAKRIQELAFLNRGLKISITDKRSGME-----QEEHFHYEGGIGSYVEFLN 241

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           + + +I         E +G     VE A+ +       + S+ N I T EGGTHE G R 
Sbjct: 242 DKKDVIFETPIYTDGELEGI---AVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRA 298

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA+  +   +   ++  +D+      ++SV    P+F GQTKTKL + +  +
Sbjct: 299 ALTRVINDYAKKNKILKENDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKL 453
                  + F  +L++NP  A K++E  I  S+ R+  ++ REV RK +      LPGKL
Sbjct: 359 ITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGWEISNLPGKL 418

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS N A   ELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I
Sbjct: 419 ADCSSNDASQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 478

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             L  A+G    + +     RY+K++IMTDADVDGAHI +LLLT  Y+ M  ++E  +++
Sbjct: 479 RSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVY 538

Query: 574 LISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           +  PP++ +  G++   Y       EE  +  LE++   G+ K  + R+KGLGEM   QL
Sbjct: 539 IAQPPIYGVKVGSEIKEYIQPGIEQEEQLKTALEKYS-VGRSKPTVQRYKGLGEMDDHQL 597

Query: 629 KETAMDANKRTLLRVEINKDLNSL 652
            ET MD   R + RV ++    + 
Sbjct: 598 WETTMDPENRLMARVTVDDAAEAD 621


>gi|156888541|gb|ABU96675.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|156888543|gb|ABU96676.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|156888545|gb|ABU96677.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 621

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 251/624 (40%), Positives = 361/624 (57%), Gaps = 20/624 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +  +  YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A  I
Sbjct: 9   EEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFATHI 68

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +  +TVVDNGRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGV
Sbjct: 69  QVFIEADNSITVVDNGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS +L V V +   I  Q+F RG  ++ LE          T + F PDP+IF 
Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVIGTTDVTG-TTVHFTPDPEIFT 186

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   FD   L K  Q  A+L+  +K   +  +   E     ++E F++ GG+ +Y++   
Sbjct: 187 ETTEFDYKVLAKRIQELAFLNRGLKISITDKRSGME-----QEEHFHYEGGIGSYVEFLN 241

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           + + +I         E +G     VE A+ +       + S+ N I T EGGTHE G R 
Sbjct: 242 DKKEVIFDTPIYTDGELEGI---AVEVAMQYTTSYHEVVMSFANNIHTHEGGTHEQGFRT 298

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA+  +   +   ++  +D+      ++SV    P+F GQTKTKL + +  +
Sbjct: 299 ALTRVINDYAKKNKILKENDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKL 453
                  + F  +L++NP  A K++E  I  S+ R+  ++ REV RK +      LPGKL
Sbjct: 359 ITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGWEISNLPGKL 418

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS N A   ELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I
Sbjct: 419 ADCSSNDASQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 478

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             L  A+G    + +     RY+K++IMTDADVDGAHI +LLLT  Y+ M  ++E  +++
Sbjct: 479 RSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVY 538

Query: 574 LISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           +  PP++ +  G++   Y       EE  +  LE++   G+ K  + R+KGLGEM   QL
Sbjct: 539 IAQPPIYGVKVGSEIKEYIQPGIEQEEQLKTALEKYS-VGRSKPTVQRYKGLGEMDDHQL 597

Query: 629 KETAMDANKRTLLRVEINKDLNSL 652
            ET MD   R + RV ++    + 
Sbjct: 598 WETTMDPENRLMARVTVDDAAEAD 621


>gi|163841158|ref|YP_001625563.1| DNA topoisomerase IV subunit B [Renibacterium salmoninarum ATCC
           33209]
 gi|162954634|gb|ABY24149.1| DNA gyrase subunit B [Renibacterium salmoninarum ATCC 33209]
          Length = 703

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 237/706 (33%), Positives = 340/706 (48%), Gaps = 63/706 (8%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +   +Y+A  + +LEGL+ VR RPGMYIG TD + L H   E++DNA+DE + G+   I 
Sbjct: 3   ATKSDYNARHLSVLEGLDAVRKRPGMYIGSTDSRGLMHCLWEILDNAVDEALGGFGQKIL 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V L  +  + V D+GRGIPV+  PK    + +E++LT LHAGGKF  S+Y  SGGLHGVG
Sbjct: 63  VILHKDNSVEVHDDGRGIPVDIEPK-TGLTGVEVVLTKLHAGGKFGGSSYAASGGLHGVG 121

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE---------------------KKE 197
            SVVNALS  L   V R    +   F RG P    E                        
Sbjct: 122 ASVVNALSARLDAQVDRGGKTYQMSFRRGEPGVFKETGRSLSPNSTFEPFVQKSVLGVIG 181

Query: 198 KVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
             +    GTRI +  D +IF   A F    L    +  ++L   ++     ++ +A   G
Sbjct: 182 TTKRGVTGTRIRYWADQQIFTPDAKFSYEELAARARQTSFLVPGLRITIRDERGLANTAG 241

Query: 257 I--PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT----------------H 298
              P KE F+  GG+  ++     +  +       G    K T                 
Sbjct: 242 ELGPHKEVFHHDGGISEFVDFLAVDAPVTDIWRLHGTASFKETVPVLDDNGHMMPTEVER 301

Query: 299 RGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK---RA 354
              V+ A+ W       + S+ N I T +GG H+ G   AL R  +K  E    K     
Sbjct: 302 DCEVDIALRWGIGYETTMRSFVNIISTPKGGRHQEGFEQALLRTFRKVIEANARKLKAGN 361

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RTVENALRDPFDHYLVQ 410
             I  DD+      +L+V + EP+F GQTK  L +   +    + VE  +    +     
Sbjct: 362 DKIEKDDVQAGLTAVLTVRLAEPQFEGQTKEVLGTPAVRAIVAKVVEQEITAKLNSSNRN 421

Query: 411 NPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           +  ++  LLE V+   + R+  R  +E   RK A+    LP KLADC       TELFIV
Sbjct: 422 DKAQSALLLEKVVSEMKSRISARVHKETQRRKNALETSSLPAKLADCRSEETERTELFIV 481

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           EGDSA G+A+ AR+   QA+LP+RGKILNV  A    + +N +   L+Q +G  +   + 
Sbjct: 482 EGDSALGTARLARSSDFQALLPIRGKILNVQKASVGDMLSNAECAALIQVVGAGSGRSFD 541

Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI------T 583
            E  RY K+I+MTDADVDGAHI +LLLT F++ M  +I+   ++   PPL R+       
Sbjct: 542 IEGARYGKIIVMTDADVDGAHIRTLLLTLFFRYMRPMIDAGRVYAAVPPLHRVEVINHGQ 601

Query: 584 QGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRTLLR 642
           +  + +Y + E     +L+  +K GK  K  I R+KGLGEM A QL ET MD   RTL R
Sbjct: 602 KANELIYTYTENELNDLLKRLEKEGKRYKEPIQRYKGLGEMDADQLAETTMDPRHRTLRR 661

Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVGT 686
           V         +  + +   LMG+    R +FI   ++ +D   +  
Sbjct: 662 VT----ATHAEAAEKTFELLMGSDVAPRKEFIIAGSAMLDRERLDA 703


>gi|149907751|ref|ZP_01896498.1| DNA topoisomerase IV subunit B [Moritella sp. PE36]
 gi|149809421|gb|EDM69350.1| DNA topoisomerase IV subunit B [Moritella sp. PE36]
          Length = 629

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 252/646 (39%), Positives = 348/646 (53%), Gaps = 22/646 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A SI +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  I V+
Sbjct: 2   TQEYNAGSIEVLNGLEPVRRRPGMY---TDTVRPNHLGQEVIDNSVDEALAGHAQSITVT 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V D+GRG+PV+ HP     S +E+IL+ LHAGGKF N +Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVSDDGRGMPVDIHP-VEGVSGVELILSKLHAGGKFSNDSYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDK 219
           VVNALS  + +T+ R   I+   F  G  +S LE    +     GT++ F PDP  F   
Sbjct: 118 VVNALSKRVEITIRRGGQIYQIAFEHGEKVSELEVIGTIGIRTTGTKVHFWPDPSYFDSG 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F A RL+   ++KA L   +   +  DK   EK        + F  GL+ YL   L+ 
Sbjct: 178 N-FSAKRLVHNLRAKAVLCPGLSIKF-DDKVNKEK------HAWCFEKGLEDYLMESLDK 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
              I    F G                          SY N I T  GGTH +GLR  L 
Sbjct: 230 WPTIPETPFVGSFSANNEA-ADWAVIWLPEGGESVTESYVNLIPTVLGGTHVNGLRQGLL 288

Query: 340 RGIKKYAEL-TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E  +   R + +  DD+      ILSV +++P+FAGQTK +L S      V  
Sbjct: 289 DAMREFCEFRSLLPRGVKLTPDDIWDRCSYILSVKMQDPQFAGQTKERLSSRQCAAFVSG 348

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L  N   A  L E  I  +++RL+    ++V RK       LPGKL DCS 
Sbjct: 349 VVKDSFSLWLNSNTDLAELLAEVCINNAQKRLK--ASKKVARKRVTSGPALPGKLTDCSG 406

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +ELF+VEGDSAGGSAKQAR+R  QAV+PLRGKILN     S ++  ++++ ++  
Sbjct: 407 QDPMRSELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVDSAQVLASEEVHNISV 466

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG    S      LRY KV I+ DAD DG HIA+LL   FY+    ++E  H F+  PP
Sbjct: 467 ALGIDPDSDDI-SGLRYGKVCILADADSDGLHIATLLCALFYKHFRAMVEAGHAFVAMPP 525

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANK 637
           L+RI  G +  YA DE  K  IL+  +   K GK+ + RFKGLGEM   QL+ET MD N 
Sbjct: 526 LYRIDIGKEVFYALDEAEKNGILDRIEAEKKRGKVNVQRFKGLGEMNPLQLRETTMDPNT 585

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
           R L+R+ I+    +          L   ++ +R  +++++ + + D
Sbjct: 586 RRLVRLTIDDADETFAMMDML---LAKKRSADRRAWLEDKGNMLSD 628


>gi|190150573|ref|YP_001969098.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307263918|ref|ZP_07545522.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189915704|gb|ACE61956.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306870783|gb|EFN02523.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 637

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 252/650 (38%), Positives = 370/650 (56%), Gaps = 28/650 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y A  I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE ++GYA+ I+V L
Sbjct: 4   KRYGADEITVLKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALSGYASQIDVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V+DNGRG+PV+ H      S +E+I+T LHAGGKF N  Y  SGGLHGVGISV
Sbjct: 61  HTDNSLEVIDNGRGMPVDIHS-TEKISGVELIMTKLHAGGKFSNKNYTFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + + + R   I++  F  G+ +  L       + + GT + F P+PK F    
Sbjct: 120 VNALSQRVEIKIKRNGEIYTIAFENGVKVEELTVIGSCPKKQTGTTVRFYPNPKYFDSPR 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L  ++   +         +     E +Y+  GL  YL   L+  
Sbjct: 180 -FSVSRLRHLLRAKAVLCPKLTINFVD-------HINNNSETWYYEDGLSDYLSEALKEF 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             + +  F G    +      V WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 ECLPNPPFIGDVISETE---AVSWALTWLPEGGELVAESYVNLIPTAQGGTHVNGLRNGL 288

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
            + + ++ E+     +++ + +DD+      +LS+ I+EP+FAGQTK +L S  A   V+
Sbjct: 289 LKAMVEFCEIHNLLPKSVKLTADDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVD 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
           + ++D F  +L QN      + E  I  ++ RLR    ++V RK  +    LPGKLADC+
Sbjct: 349 STIKDAFSLWLNQNVQTGKLIAEMAISSAQSRLR--AAKKVVRKKLVSGPALPGKLADCT 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN     S+++  +Q++ D+ 
Sbjct: 407 SQDLSRTELFLVEGDSAGGSAKQARDKDYQAILPLRGKILNTWEVSSDQVLASQEVHDIA 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG    S    E+LRY KV I+ DAD DG HIA+LL   F +   +L++  H+++  P
Sbjct: 467 VALGIDPDSDSL-EELRYGKVCILADADSDGLHIATLLCALFLRHFPNLVKNGHVYVAMP 525

Query: 578 PLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PL+RI  G  +  YA DE  K+ IL    K  KGK  + RFKGLGEM  SQL+ET MD +
Sbjct: 526 PLYRIDIGKDEVHYALDEAEKEAILARLAKK-KGKPNVQRFKGLGEMNPSQLRETTMDPS 584

Query: 637 KRTLLRVEINK---DLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ +++      +  DT + ++ L+  K A++R +++Q R    +
Sbjct: 585 TRRLVQLTLDELDVAEENEPDTFEIMDMLLAKKRAEDRKQWLQNRGDEAE 634


>gi|113460744|ref|YP_718811.1| DNA topoisomerase IV subunit B [Haemophilus somnus 129PT]
 gi|112822787|gb|ABI24876.1| DNA topoisomerase IV subunit B [Haemophilus somnus 129PT]
          Length = 630

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 253/644 (39%), Positives = 363/644 (56%), Gaps = 23/644 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY A  I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE +AG+A  IEV L 
Sbjct: 3   NYSAQEITVLKDLEPVQLRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHATKIEVILY 59

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  L V+DNGRG+PV+ HP     S +E+ILT LHAGGKF N  YE +GGLHGVGISVV
Sbjct: 60  KDQSLEVIDNGRGMPVDIHP-TEKVSGVEVILTKLHAGGKFSNKHYEFAGGLHGVGISVV 118

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221
           NALS+ + + V R   I+   F  G+ +  LE      +   GT + F+P+PK F     
Sbjct: 119 NALSERVDIQVKRNGEIYKIAFENGVKVEELEIIGTCGKRTTGTSVHFKPNPKYFDSAN- 177

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F  +RL  + ++KA L   ++  +       E         + +  GL  YL   +   +
Sbjct: 178 FSVSRLRHLLRAKAVLCSGLEIKFIDKINNTEDT-------WLYQDGLSDYLMENVNGYN 230

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALT 339
           L+    F G      T++    WA+ W  E  E    SY N I T +GGTH +GLR  L 
Sbjct: 231 LLPQTPFVGDF---TTNKEAASWALLWLPEGGELLNESYVNLIPTIQGGTHVNGLRQGLL 287

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      + + + +DD+      +LSV + + +FAGQTK +L S  +   V  
Sbjct: 288 DAMREFCEFRNLLPKNVKLTADDIWDRCAYVLSVKMHDAQFAGQTKERLSSRQSAVFVGG 347

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L QN  +A +L + VI  +E RLR    ++V RK  +    LPGKLADCS+
Sbjct: 348 VVKDSFSLWLNQNIQDAEELAKMVISSAERRLR--AAKKVVRKKLVSGPALPGKLADCSE 405

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TELF+VEGDSAGGSAKQARNR +QA+LPLRGKILN      +++  +Q++ D+  
Sbjct: 406 QDLSKTELFLVEGDSAGGSAKQARNREHQAILPLRGKILNTWEVSPDQVLRSQEVHDIAI 465

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG    ++     LRY KV I+ DAD DG HIA+LL   F +    L++Q H+++  PP
Sbjct: 466 ALGIDPDNEDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQQGHVYVAMPP 524

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+RI  G +  YA DE  K+ IL    K+ +GK+ + RFKGLGEM  +QL+ET MD N R
Sbjct: 525 LYRIDLGNEVFYALDENEKESILARL-KNKRGKLNVQRFKGLGEMNPNQLRETTMDPNTR 583

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            L+++        +   +     L   ++++R  ++Q     +D
Sbjct: 584 RLVQLTYKPHEEDVSTLELMDMLLAKKRSEDRKIWLQNNGDQVD 627


>gi|77361502|ref|YP_341077.1| DNA topoisomerase IV subunit B [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876413|emb|CAI87635.1| DNA topoisomerase IV, subunit B [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 629

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 238/643 (37%), Positives = 346/643 (53%), Gaps = 22/643 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           +  NY+A +I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AG+A  I+V
Sbjct: 2   SQQNYNAEAIEVLNGLDPVKRRPGMY---TDTSRPNHLGQEVIDNSVDEAMAGHATRIDV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +  L V D+GRG+P++ HP+      +E+I T LHAGGKF N  Y+ SGGLHGVGI
Sbjct: 59  ILHEDNSLEVSDDGRGMPIDIHPE-EGIPGVELIFTKLHAGGKFSNKNYQFSGGLHGVGI 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS  + VTV R    +   F  G  +  L     V +   GT + F PD   F  
Sbjct: 118 SVVNALSTRVEVTVRRDAQQYRMAFENGEKVEDLSVIGVVGKRNTGTTVRFWPDVSYFDS 177

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              +   +L  + ++KA L   ++  +             E +E+++  GLK YL   ++
Sbjct: 178 PN-YSITKLNHLLKAKAVLCPGLRIKFVNK-------QTKETQEWFYETGLKDYLIEAIK 229

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
               +    F G+                         SY N I T +GGTH +GLR  L
Sbjct: 230 GYETLPDVPFVGEFSS-SIEGADWALIWLPEGGESIAESYVNLIPTAQGGTHVNGLRQGL 288

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E      R + +  DD+      +LSV +++P+FAGQTK KL S      V 
Sbjct: 289 LEAMREFCEFRNLLPRGVKLTPDDIWERCSYVLSVKMQDPQFAGQTKEKLSSRSCAAFVS 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             ++D F  +L ++   A +L E  I  ++ RLR    ++V RK       LPGKL DCS
Sbjct: 349 GVVKDSFSLWLNEHTDIAEQLSELCISNAQRRLR--AAKKVIRKRVTAGPALPGKLTDCS 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     S +I  +Q++ D+ 
Sbjct: 407 AADNDRTELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDSGQILASQEVHDIS 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  P
Sbjct: 467 VALGIDPDSDDLTA-LRYNKICILADADSDGLHIATLLCALFVRHFKPLVKAGHVYVAMP 525

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDAN 636
           PLFRI  G    YA DE+ K  IL   +   K GK+ + RFKGLGEM   QL+ET MD N
Sbjct: 526 PLFRIDIGKDVYYALDEDEKTGILARIEAEKKRGKVNVQRFKGLGEMNPLQLRETTMDPN 585

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679
            R L+++ ++++  +++        L   ++ +R +++++  +
Sbjct: 586 TRRLVQLTLDEEELTMEMMDML---LAKKRSADRRQWLEDHGN 625


>gi|238755475|ref|ZP_04616815.1| DNA topoisomerase 4 subunit B [Yersinia ruckeri ATCC 29473]
 gi|238706316|gb|EEP98693.1| DNA topoisomerase 4 subunit B [Yersinia ruckeri ATCC 29473]
          Length = 631

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 245/646 (37%), Positives = 361/646 (55%), Gaps = 26/646 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  I+V L
Sbjct: 4   SSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARRIDVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V+D+GRG+PV+ HP+      +E+I   LHAGGKF N  Y+ SGGLHGVGISV
Sbjct: 61  HADQSLEVIDDGRGMPVDIHPE-EGVPAIELIFCRLHAGGKFSNKNYQFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + V V R   ++S  F  G  +  L+      +   GT + F PD + F D  
Sbjct: 120 VNALSRRVEVNVRRDGQVYSMAFENGDKVQDLQVIGTCGKRNTGTSVHFWPD-ESFFDSP 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L   V+  +       E       + + +  GL  YL   +   
Sbjct: 179 RFSVSRLSHLLKAKAVLCPGVEIVFKDLLNNTE-------QRWCYADGLTDYLMEAVNGL 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +    F G           ++WA+ W  E  +    SY N I T +GGTH +GLR  L
Sbjct: 232 ITLPEVPFVGSFAGDTE---AIDWALLWLPEGGDLLTESYVNLIPTMQGGTHVNGLRQGL 288

Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E      R + + +DD+      +LSV +++P+FAGQTK +L S      V 
Sbjct: 289 LDAMREFCEFRNILPRGVKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             ++D F  +L QN   A +L E  I  ++ R+R    ++V RK       LPGKLADC+
Sbjct: 349 GVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADCT 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+ 
Sbjct: 407 SQDLSMTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S+     LRY KV I+ DAD DG HIA+LL   F +    L+   H+++  P
Sbjct: 467 VAIGIDPDSEDL-SQLRYGKVCILADADSDGLHIATLLCALFVRHFSSLVRGGHVYVAMP 525

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G +  YA DEE K  +LE+ K+  +GK  + RFKGLGEM   QL+ET +D N 
Sbjct: 526 PLYRIDLGKEVFYALDEEEKAGVLEQLKRK-RGKPNVQRFKGLGEMNPLQLRETTLDPNT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++ ++   + ++ T   ++ L+  K +++R  ++QE+    +
Sbjct: 585 RRLVQLTVDD--SDIEKTMAVMDMLLAKKRSEDRRNWLQEKGDTAE 628


>gi|108809114|ref|YP_653030.1| DNA topoisomerase IV subunit B [Yersinia pestis Antiqua]
 gi|167399281|ref|ZP_02304805.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|108781027|gb|ABG15085.1| DNA topoisomerase IV subunit B [Yersinia pestis Antiqua]
 gi|167051785|gb|EDR63193.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
          Length = 631

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 248/648 (38%), Positives = 357/648 (55%), Gaps = 26/648 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
              +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+   I+V
Sbjct: 2   TESSYNADAIEVLSGLEPVRRRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHTRRIDV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGI
Sbjct: 59  ILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS  + VTV R + I+S  F  G  +  L+      +   GT + F PD   F  
Sbjct: 118 SVVNALSKRVEVTVRRDSQIYSIAFENGDKVQDLQVIGTCGKRNTGTSVHFWPDVSFFDS 177

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F  +RL  + ++KA L   V+  +       E       + + +  GL  YL   + 
Sbjct: 178 PR-FSVSRLSHLLKAKAVLCPGVEIVFKDQVNNTE-------QRWCYADGLTDYLMEAVN 229

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336
               +    F G           ++WA+ W  E  E    SY N I T +GGTH +GLR 
Sbjct: 230 GFITLPEAPFVGSFAGDTE---AIDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 286

Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            L   ++ + E      R + + +DD+      +LSV +++P+FAGQTK +L S      
Sbjct: 287 GLLDAMRDFCEYRNILPRGVKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 346

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           V   ++D F  +L QN   A +L E  I  ++ R+R    ++V RK       LPGKLAD
Sbjct: 347 VSGVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C+      TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D
Sbjct: 405 CTSQDLSLTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 464

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  A+G    S+     LRY KV I+ DAD DG HIA+LL   F +    L+   H+++ 
Sbjct: 465 ISVAIGIDPDSEDL-SQLRYGKVCILADADSDGLHIATLLCALFVRHFRALVRNGHVYVA 523

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+RI  G +  YA DEE K  +LE+ K+  +GK  + RFKGLGEM   QL+ET +D 
Sbjct: 524 MPPLYRIDLGKEVFYALDEEEKAGVLEQLKRK-RGKPNVQRFKGLGEMNPLQLRETTLDP 582

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           N R L+++ I+ D          ++ L+  K +++R  ++QE+    +
Sbjct: 583 NTRRLVQLTISDDDIDHTLA--VMDMLLAKKRSEDRRNWLQEKGDTAE 628


>gi|226356526|ref|YP_002786266.1| DNA topoisomerase [Deinococcus deserti VCD115]
 gi|226318516|gb|ACO46512.1| putative DNA topoisomerase (ATP-hydrolyzing) (DNA gyrase, subunit
           B) [Deinococcus deserti VCD115]
          Length = 674

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 251/662 (37%), Positives = 350/662 (52%), Gaps = 22/662 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYI-GGTDEKALHHLFSEVIDNAMDEVIAGY 93
            ++     NY A  I +LEG++ VR RPGMY+ GGT     H L +E+IDN +DE +AG+
Sbjct: 18  NSSSQGKTNYTADDISVLEGMDAVRKRPGMYVQGGTGIDGYHQLLTEIIDNGIDEGLAGF 77

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A  + V +  +G  TV D+GRGIPV+   K   +  +E+I + LHAGGKF    Y++SGG
Sbjct: 78  ATEVHVIMHADGSATVTDDGRGIPVDIM-KSKGRPAIEVIFSELHAGGKFGGGAYKVSGG 136

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV--RNKRGTRITFRP 211
           LHGVG +VVNALS  L V V +   I   +F +G  + PL+            T ++F+P
Sbjct: 137 LHGVGSTVVNALSTFLDVKVNKGGKIHHIRFEQGQLVQPLQVLGDTPAEITWATSVSFQP 196

Query: 212 DPKIFGDK-AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           DP IF +    FD  R+    +  AYL+G  K     ++       + E E F+  GG+ 
Sbjct: 197 DPSIFKEFDNQFDYTRIRNRLRELAYLTGL-KIVVRDERTELHAGMVKE-EIFHEKGGIA 254

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330
            + +  + + + +  +       K       V +  A    +  I +Y N I T +GGT 
Sbjct: 255 NFARALVVDDNKLLYDQPIVMRGKHSDVEVEVAFIHANTYASDNILTYANMIRTRDGGTP 314

Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G + A TR + KYA      +        DDL+     ++SV + EP+F  Q K KL+
Sbjct: 315 LTGFKTAYTRILNKYARDKNLIKSGHPVPSGDDLLEGIYCVVSVKLGEPQFESQAKVKLL 374

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKL 447
           + +AQ  V   + + F  +L +NP     ++E   E +  R   RK    V R   +   
Sbjct: 375 NSEAQTAVNAVVGEKFAEFLEENPRVGKTIVEKAAEAARAREAARKARDIVRRSNPLEND 434

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADCS      +E+FIVEG SAGGSAK  R R  QA+LPLRGKILNV  A   KI
Sbjct: 435 DLPGKLADCSSQDPAESEMFIVEGISAGGSAKGGRERRFQAILPLRGKILNVEKADLNKI 494

Query: 508 RNNQQIMDLVQALG-----CRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
             N +I  L+ A+G        R  +   +LRY K+IIMTDAD+DG HIA+LLLTFFY+ 
Sbjct: 495 LKNAEIRALIGAIGAGVEGTGDRMHFDLSNLRYHKIIIMTDADMDGGHIATLLLTFFYRY 554

Query: 563 MYDLIEQKHLFLISPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           M  ++E  +L++  PPL+RI  G   K  Y +  E  +  +    K GK K +I RFKGL
Sbjct: 555 MRPVVEAGYLYIAQPPLYRIMVGREKKGTYLYTNEDLKIHVARATKEGK-KFDIQRFKGL 613

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GEM A QL +T M+   R L RV+I      L    +    LMGT+   R  FIQE A F
Sbjct: 614 GEMNADQLWDTTMNPETRALKRVQIED----LIVANEVFENLMGTEVAPRKTFIQENARF 669

Query: 681 ID 682
            +
Sbjct: 670 AE 671


>gi|52424933|ref|YP_088070.1| DNA topoisomerase IV subunit B [Mannheimia succiniciproducens
           MBEL55E]
 gi|52306985|gb|AAU37485.1| GyrB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 632

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 259/647 (40%), Positives = 371/647 (57%), Gaps = 24/647 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++NY A  I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE +AG+AN IEV 
Sbjct: 2   ANNYSAEDITVLKDLEPVQLRPGMY---TDTSRPNHLGQEVIDNSVDEALAGFANKIEVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+DNGRG+PV+ HP     S +E+IL+ LHAGGKF N  YE SGGLHGVGIS
Sbjct: 59  LHKDQSLEVIDNGRGMPVDIHP-TEKVSGIELILSKLHAGGKFSNKNYEYSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS+ + V V R   I+   FS G  +  L+      R   GT + F+P+PK F   
Sbjct: 118 VVNALSELVEVIVKRDGQIYKIVFSNGQKIEELQVIGTCGRRNTGTTVRFKPNPKYFDSD 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F   RL  + ++KA L   ++  ++      E       E + +  GL  YL   ++ 
Sbjct: 178 -KFSVTRLRHLLRAKAVLCSGLEIKFTDKVNDTE-------ESWCYQDGLSDYLIEAVQG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
            + +    F G           V WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 YNALPQTPFIGDFSAD---SEAVSWALLWLPEGGELIAESYVNLIPTIQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + +++DD+      +LS+ + +P+FAGQTK +L S  +   +
Sbjct: 287 LLDAMREFCEFRNLLPRGVKLVADDIWDRCAYVLSLKMHDPQFAGQTKERLSSRQSAVFI 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN     +L E  I  ++ RLR    ++V RK  +    LPGKLADC
Sbjct: 347 GGVVKDAFSLWLNQNVEIGQQLAELAINSAQRRLR--ASKKVVRKKLVSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           SQ     TELF+VEGDSAGGSAKQAR+R  QA+LPLRGKILN     S+++  ++++ ++
Sbjct: 405 SQQDLEKTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSSDQVLGSEEVHNI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             ALG    S      LRY KV I+ DAD DG HIA+LL   F +    L++Q H+F+  
Sbjct: 465 AIALGIDPDSDDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQQGHVFVAM 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA DE  K+ IL+   K  +GK  + RFKGLGEM  SQL+ET M+ N
Sbjct: 524 PPLYRIDLGKEVFYALDESEKEGILDRL-KSKRGKPNVQRFKGLGEMNPSQLRETTMEPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++   +D  ++ +T + ++ L+  K A++R  ++Q +   +D
Sbjct: 583 TRRLVQLTYEQDETNMTETFELMDMLLAKKRAEDRKNWLQTKGDQVD 629


>gi|257068604|ref|YP_003154859.1| DNA topoisomerase IV subunit B [Brachybacterium faecium DSM 4810]
 gi|256559422|gb|ACU85269.1| DNA topoisomerase IV subunit B [Brachybacterium faecium DSM 4810]
          Length = 705

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 233/704 (33%), Positives = 346/704 (49%), Gaps = 61/704 (8%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           +  + +    YDA ++++LEGLE VR RPGMY+G TD + L H   E++DNA+DE + GY
Sbjct: 2   STTSTAKKSAYDARNLQVLEGLEAVRKRPGMYVGSTDSRGLMHCLWEILDNAVDEALGGY 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
            + IEV L  +  + V D GRG+PV+  P+    + +E++ T LHAGGKF   +Y  SGG
Sbjct: 62  GDSIEVILHPDHSVEVRDTGRGVPVDVEPR-TGLTGVEVVYTKLHAGGKFGGGSYAASGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN------------ 201
           LHGVG SVVNALS  L V V R   I++  F RG P    +      +            
Sbjct: 121 LHGVGASVVNALSGRLDVEVDRGGKIYAMSFRRGQPGEFADADGPSPDSEFTPLTGPDAL 180

Query: 202 ---------KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
                      GTR+ +  DP+IF   + F    L + ++  A+L   +K   +  +   
Sbjct: 181 RVVGKAKRGVTGTRVRYWADPQIFVKGSHFSLDDLTRRSRQTAFLVPGLKLSVTDHR-PE 239

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKG 296
                P    F + GG+  +++   +++ +       G  E                   
Sbjct: 240 ASPDQPATRTFKYDGGISEFVEYLAQDQKITDVIRLRGTGEYTETIPVLDKNGHMVSTDV 299

Query: 297 THRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL-----TQ 350
                V+ A+ W  + +  + S+ N + T +GGTH +G   AL + ++K  E        
Sbjct: 300 ERSCEVDIALRWGADFDATVRSFVNIVATPKGGTHVTGFEQALVKTVRKQVENHARRVKF 359

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
           N +   I  DD +     ++SV I EP+F GQTK  L +   +  V   + D    +L  
Sbjct: 360 NAKNEKIEKDDTLAGLTAVVSVRIDEPQFEGQTKEVLGTPAIRAIVAKVVEDRLTEFLTS 419

Query: 411 NPIEATKLLEWVIER----SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTE 465
                 +    VI++       R+  R  +E   RK A+    +P KLADC  +    +E
Sbjct: 420 TTKGEKEQAALVIDKVVSEMRARIAARMHKEVSRRKNALESSTMPTKLADCRTHDVDRSE 479

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
           LFIVEGDSA G+AK AR+  +QA+LP+RGKILN   A    +  N +   ++Q +G  + 
Sbjct: 480 LFIVEGDSALGTAKNARSSEHQALLPIRGKILNTQKASVTDMLKNTECAAIIQVIGAGSG 539

Query: 526 SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI--- 582
             +  E  RY K+I+MTDADVDGAHI +LLLT F++ M  L+E   ++   PPL R+   
Sbjct: 540 RTFDLEAARYGKIIMMTDADVDGAHIRTLLLTLFHRYMRPLVEAGRVYAAVPPLHRVEII 599

Query: 583 ---TQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKR 638
               +  + VY + E    K+L+  ++ GK  K  I R+KGLGEM A QL +T MD   R
Sbjct: 600 HGGKKKNELVYTYSEAELHKLLKNLERRGKRYKEPIQRYKGLGEMDADQLADTTMDPGHR 659

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           TL RV I       +        LMG++   R +FI E A  +D
Sbjct: 660 TLRRVRIED----AEAASAVFELLMGSEVAPRKQFIIEGAEELD 699


>gi|182623989|ref|ZP_02951777.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium
           perfringens D str. JGS1721]
 gi|177910882|gb|EDT73236.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium
           perfringens D str. JGS1721]
          Length = 648

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 225/663 (33%), Positives = 353/663 (53%), Gaps = 36/663 (5%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            + ++NYD +S+  LE LEPVR+RPGMYIG T  K LHH   E++DN++DE+  GY N  
Sbjct: 2   SNKNNNYDVTSLTSLEKLEPVRVRPGMYIGSTGSKGLHHCIWEILDNSIDEISNGYGNKA 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V L+ +  +TV+DNGRGIP   HP    K+ +E++ T LH GGKF+N  Y+ SGGLHGV
Sbjct: 62  KVILNKDKSVTVIDNGRGIPTGMHP-IKKKTGVEMVFTELHTGGKFNNQNYKTSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTR 206
           G +VVNALS  L V V +   I+ Q+F             G P++PLE   + +   GT+
Sbjct: 121 GAAVVNALSRWLEVEVKQNGKIYRQRFEYAYDKELKKDMPGTPVTPLEVVGESKE-TGTK 179

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           +TF PD ++F   + F    + +  Q  A+ +  ++     +++            +Y  
Sbjct: 180 VTFLPDREVFST-SDFKFDIIDERLQELAFQNKGIRLELIDNRKEESVSKE-----YYSE 233

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCE-ENPEITSYCNTILT 324
            GL  ++    E+++ +       + EK+    +   E  + + +     I SY N I T
Sbjct: 234 RGLLDFIDYLNESKTPLHPTPVLFEGEKEVNNIQMYGEICLQFTDSTTENIVSYVNNIPT 293

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            E GTHE+G +  +TR  K++A+      ++      DDL      I+ + I  P F GQ
Sbjct: 294 TEAGTHETGFKTGMTRAFKEWAKKLNLIKEKDKEFEGDDLREGMTAIVRIKITNPVFEGQ 353

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TKTKL + +A   + +     F H++  N   AT ++   ++ +  R + +K  +  RK 
Sbjct: 354 TKTKLGNNEAYTMMNDLAYTKFGHWIEDNKEVATMIINNALDAAARREKIKKINDAERKK 413

Query: 443 AIRKL-RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    L GK+A C+       E  +VEGDSAGGSAKQAR+R  Q ++P +GKI+N   
Sbjct: 414 IGKGTAPLAGKVAVCTLKNKEANEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEK 473

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
              E +  ++++     A+G      Y EEDL+Y+K+IIM+DADVDG HI +L +T+ Y+
Sbjct: 474 QKLENVIASEELKIFNTAIGTGILDNYNEEDLKYDKIIIMSDADVDGYHIRTLWMTYIYR 533

Query: 562 EMYDLIEQKHLFLISPPLFRITQ----GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
            M  LI   HL+L  PPL+++ +      K +YA+ ++  +++ ++  K       I RF
Sbjct: 534 YMRPLIANGHLYLAQPPLYKVAKLGKGKDKILYAYSDDELEEVKKKVGKGA----TIQRF 589

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           KGLGEM   QL ET ++   RTL++V I          +  ++ LMG     R  ++ + 
Sbjct: 590 KGLGEMNPDQLWETTLNPETRTLVQVTIED----AAKAEKMVSLLMGDVVQPRKNYMYKY 645

Query: 678 ASF 680
           A F
Sbjct: 646 AEF 648


>gi|330828212|ref|YP_004391164.1| DNA topoisomerase IV subunit B [Aeromonas veronii B565]
 gi|328803348|gb|AEB48547.1| DNA topoisomerase IV, B subunit [Aeromonas veronii B565]
          Length = 636

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 250/651 (38%), Positives = 363/651 (55%), Gaps = 28/651 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  +EV 
Sbjct: 2   STQYNADAIEVLNGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARNLEVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+    S +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHEDQSLEVIDDGRGMPVDIHPE-EGVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALSD + VTV R   ++   F RG  +  L       R   GTR+ F P    F   
Sbjct: 118 VVNALSDRVEVTVRRDGQVYDIAFERGEKVQELTITGTCGRRNTGTRVRFWPQASYFDSP 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F   +L  + ++KA L   +   +              K E+ +  GLK YL   ++ 
Sbjct: 178 -KFSVTKLEHLLKAKAVLCPGLTIKFLDK-------NTGIKLEWCYEDGLKDYLVDAVKQ 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVA 337
            + +  + F G    +   +  V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 FTCLPEQPFIGSFSSE---QSAVDWALCWLPEGGECLAESYVNLIPTAQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + +  +D+      ILS+ +++P+FAGQTK +L S  +   V
Sbjct: 287 LLDAMREFCEFRNLLPRGVKLTPEDIWDRCAYILSIKMQDPQFAGQTKERLSSRQSSAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  YL  N   A ++ E  I  ++ R+R    + V RK   +   LPGKL DC
Sbjct: 347 SGVVKDAFSLYLNSNTELAEQIAEICISSAQRRMR--AAKTVVRKKITQGPALPGKLTDC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +       ELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     + ++  +Q++ D+
Sbjct: 405 NCADPMQGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVEAGQVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S+     LRY KV I+ DAD DG HIA+LL   F +    L+E+ H+++  
Sbjct: 465 SVAIGLDPDSEDL-SGLRYGKVCILADADSDGLHIATLLCALFVKHFRTLVEKGHVYVAM 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFK-KHGKGKIEISRFKGLGEMLASQLKETAMDA 635
           PPL+RI  G +  YA DE+ K  +L+  + +  KGK+ ++RFKGLGEM   QL+ET MD 
Sbjct: 524 PPLYRIDIGKEVYYALDEDEKNGVLQRVEAEKKKGKVMVTRFKGLGEMNPKQLRETTMDP 583

Query: 636 NKRTLLRVEINKDLNSLKDTQD----SINKLMGTK-ADERFKFIQERASFI 681
           N R L+++ +     S  D  D     ++ L+  K A +R ++++E+ +  
Sbjct: 584 NTRRLVQLTMEPAGESEGDAADETLQLMDMLLAKKRASDRREWLEEKGNLA 634


>gi|168208771|ref|ZP_02634396.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium
           perfringens B str. ATCC 3626]
 gi|170713087|gb|EDT25269.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium
           perfringens B str. ATCC 3626]
          Length = 648

 Score =  542 bits (1395), Expect = e-152,   Method: Composition-based stats.
 Identities = 225/663 (33%), Positives = 353/663 (53%), Gaps = 36/663 (5%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            + ++NYD +S+  LE LEPVR+RPGMYIG T  K LHH   E++DN++DE+  GY N  
Sbjct: 2   SNKNNNYDVTSLTSLEKLEPVRVRPGMYIGSTGSKGLHHCIWEILDNSIDEISNGYGNKA 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V L+ +  +TV+DNGRGIP   HP    K+ +E++ T LH GGKF+N  Y+ SGGLHGV
Sbjct: 62  KVILNKDKSVTVIDNGRGIPTGMHP-IKKKTGVEMVFTELHTGGKFNNQNYKTSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTR 206
           G +VVNALS  L V V +   I+ Q+F             G P++PLE   + +   GT+
Sbjct: 121 GAAVVNALSRWLEVEVKQNGKIYRQRFEYAYDKELKKDMPGTPVTPLEVVGESKE-TGTK 179

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           +TF PD ++F   + F    + +  Q  A+ +  ++     +++            +Y  
Sbjct: 180 VTFLPDREVFST-SDFKFDIIDERLQELAFQNKGIRLELIDNRKEESVSKE-----YYSE 233

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCE-ENPEITSYCNTILT 324
            GL  ++    E+++ +       + EK+    +   E  + + +     I SY N I T
Sbjct: 234 RGLLDFIDYLNESKTPLHPTPVLFEGEKEVNNIQMYGEICLQFTDSTTENIVSYVNNIPT 293

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            E GTHE+G +  +TR  K++A+      ++      DDL      I+ + I  P F GQ
Sbjct: 294 TEAGTHETGFKTGMTRAFKEWAKKLNLVKEKDKEFEGDDLREGMTAIVRIKITNPVFEGQ 353

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TKTKL + +A   + +     F H++  N   AT ++   ++ +  R + +K  +  RK 
Sbjct: 354 TKTKLGNNEAYTMMNDLAYTKFGHWIEDNKEVATMIINNALDAAARREKIKKINDAERKK 413

Query: 443 AIRKL-RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    L GK+A C+       E  +VEGDSAGGSAKQAR+R  Q ++P +GKI+N   
Sbjct: 414 IGKGTAPLAGKVAVCTLKNKEANEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEK 473

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
              E +  ++++     A+G      Y EEDL+Y+K+IIM+DADVDG HI +L +T+ Y+
Sbjct: 474 QKLENVIASEELKIFNTAIGTGILDNYNEEDLKYDKIIIMSDADVDGYHIRTLWMTYIYR 533

Query: 562 EMYDLIEQKHLFLISPPLFRITQ----GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
            M  LI   HL+L  PPL+++ +      K +YA+ ++  +++ ++  K       I RF
Sbjct: 534 YMRPLIANGHLYLAQPPLYKVAKSGKGKDKILYAYSDDELEEVKKKVGKGA----TIQRF 589

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           KGLGEM   QL ET ++   RTL++V I          +  ++ LMG     R  ++ + 
Sbjct: 590 KGLGEMNPDQLWETTLNPETRTLVQVTIED----AAKAEKMVSLLMGDVVQPRKNYMYKY 645

Query: 678 ASF 680
           A F
Sbjct: 646 AEF 648


>gi|157963372|ref|YP_001503406.1| DNA topoisomerase IV subunit B [Shewanella pealeana ATCC 700345]
 gi|157848372|gb|ABV88871.1| DNA topoisomerase IV, B subunit [Shewanella pealeana ATCC 700345]
          Length = 631

 Score =  542 bits (1395), Expect = e-152,   Method: Composition-based stats.
 Identities = 243/648 (37%), Positives = 355/648 (54%), Gaps = 26/648 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ Y + +I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AG+A+ I+
Sbjct: 3   AMTNQYTSDAIEVLNGLDPVKRRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHASRID 59

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V L  +  L V+D+GRG+PV+ HP+      +E+ILT LHAGGKF N  Y+ SGGLHGVG
Sbjct: 60  VILHADNSLEVIDDGRGMPVDIHPE-EGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVG 118

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFG 217
           ISVVNALS  + +TV R   ++   F  G  +  L       R   GT + F PD   F 
Sbjct: 119 ISVVNALSSRVEITVRRNAEVYEMAFEHGEKVEDLHVTGTCGRRNTGTSVHFWPDASYFD 178

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F  ++L  + ++KA L   ++  +             E +E+++  GL+ YL++  
Sbjct: 179 SGN-FSISKLTYLLKAKAVLCPGLRIKFVNK-------QTNETQEWFYESGLEDYLRSSF 230

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLR 335
           +    +    F G            +WAI W  E  E    SY N I T  GGTH +G R
Sbjct: 231 KGVPTLPEVPFVGSFAGN---LEAADWAITWLPEGGEYLNESYVNLIPTPLGGTHVNGFR 287

Query: 336 VALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
             L   ++++ E      R I +  +D+   +  ILS+ +++P+FAGQTK KL S     
Sbjct: 288 QGLLESMREFCEFRNLMPRGIKLTPEDIWDRSTFILSIKMQDPQFAGQTKEKLSSRQCAA 347

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454
            V   +RD F  +L  N  +A  L +  I  +++RL+    ++V RK       LPGKL 
Sbjct: 348 FVSGIVRDAFSLWLNTNTEQAEALADMCINNAQKRLK--AAKKVARKRITSGPALPGKLT 405

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS       ELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     + ++  +Q++ 
Sbjct: 406 DCSGQDPMRGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASQEVH 465

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           D+  A+GC   S     +LRY K+ I+ DAD DG HIA+LL   F +    L+EQ H+++
Sbjct: 466 DISVAIGCDPDSADI-SELRYGKICILADADSDGLHIATLLCALFMKHYRVLVEQGHIYV 524

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAM 633
             PPLFRI  G    YA DE  K  IL+       KGK++++RFKGLGEM   QL+ET M
Sbjct: 525 AMPPLFRIDIGKDVFYALDEAEKNGILDRITAEKRKGKVQVTRFKGLGEMNPLQLRETTM 584

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           D N R L+++ I+   ++L         L   ++ +R  +++ +    
Sbjct: 585 DPNTRRLVQLTIDDAEDTLALMDML---LAKKRSGDRKIWLETKGDLA 629


>gi|110801950|ref|YP_699349.1| DNA topoisomerase IV subunit B [Clostridium perfringens SM101]
 gi|110682451|gb|ABG85821.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium
           perfringens SM101]
          Length = 648

 Score =  542 bits (1395), Expect = e-152,   Method: Composition-based stats.
 Identities = 226/663 (34%), Positives = 353/663 (53%), Gaps = 36/663 (5%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            + ++NYD +S+  LE LEPVR+RPGMYIG T  K LHH   E++DN++DE+  GY N  
Sbjct: 2   SNKNNNYDVTSLTSLEKLEPVRVRPGMYIGSTGSKGLHHCIWEILDNSIDEISNGYGNKA 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V L+ +  +TV+DNGRGIP   HP    K+ +E++ T LH GGKF+N  Y+ SGGLHGV
Sbjct: 62  KVILNKDKSVTVIDNGRGIPTGMHP-IKKKTGVEMVFTELHTGGKFNNQNYKTSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTR 206
           G +VVNALS  L V V +   I+ Q+F             G P++PLE   + +   GT+
Sbjct: 121 GAAVVNALSRWLEVEVKQNGKIYRQRFEYAYDKELKKDMPGTPVTPLEVVGESKE-TGTK 179

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           +TF PD ++F   + F    + +  Q  A+ +  ++     +++            +Y  
Sbjct: 180 VTFLPDREVFST-SDFKFDIIDERLQELAFQNKGIRLELIDNRKEESVSKE-----YYSE 233

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCE-ENPEITSYCNTILT 324
            GL  ++    E+++ +       + EK+    +   E  + + +     I SY N I T
Sbjct: 234 RGLLDFIDYLNESKTPLHPTPVLFEGEKEVNNIQMYGEICLQFTDSTTENIVSYVNNIPT 293

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            E GTHE+G +  +TR  K++A+      ++      DDL      I+ + I  P F GQ
Sbjct: 294 TEAGTHETGFKTGMTRAFKEWAKKLNLIKEKDKEFEGDDLREGMTAIVRIKITNPVFEGQ 353

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TKTKL + +A   + +     F H++  N   AT ++   +E +  R + +K  +  RK 
Sbjct: 354 TKTKLGNNEAYTMMNDLAYTKFGHWIEDNKEVATMIINNALEAAARREKIKKINDAERKK 413

Query: 443 AIRKL-RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    L GK+A C+       E  +VEGDSAGGSAKQAR+R  Q ++P +GKI+N   
Sbjct: 414 IGKGTAPLAGKVAVCTLKNKEANEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEK 473

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
              E +  ++++     A+G      Y EEDL+Y+K+IIM+DADVDG HI +L +T+ Y+
Sbjct: 474 QKLENVIASEELKIFNTAIGTGILDNYNEEDLKYDKIIIMSDADVDGYHIRTLWMTYIYR 533

Query: 562 EMYDLIEQKHLFLISPPLFRITQ----GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
            M  LI   HL+L  PPL+++ +      K +YA+ ++  +++ ++  K       I RF
Sbjct: 534 YMRPLIANGHLYLAQPPLYKVAKSGKGKDKILYAYSDDELEEVKKKVGKGA----TIQRF 589

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           KGLGEM   QL ET ++   RTL++V I          +  ++ LMG     R  ++ + 
Sbjct: 590 KGLGEMNPDQLWETTLNPETRTLVQVTIED----AAKAEKMVSLLMGDVVQPRKNYMYKY 645

Query: 678 ASF 680
           A F
Sbjct: 646 AEF 648


>gi|307129110|ref|YP_003881126.1| Topoisomerase IV subunit B [Dickeya dadantii 3937]
 gi|306526639|gb|ADM96569.1| Topoisomerase IV subunit B [Dickeya dadantii 3937]
          Length = 631

 Score =  542 bits (1395), Expect = e-152,   Method: Composition-based stats.
 Identities = 253/649 (38%), Positives = 362/649 (55%), Gaps = 27/649 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  I+V L
Sbjct: 4   SSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARRIDVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGISV
Sbjct: 61  HPDQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + VTV R   ++   F  G  +  L       R   GTR+ F PD   F    
Sbjct: 120 VNALSTRVEVTVRRDGQVYDIAFENGDKVQDLTVTGTCGRRNTGTRVHFWPDASFFDSPR 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L  + ++KA L   V+  +       E       + + + GGL  YL   +   
Sbjct: 180 -FSVLSLTHLLKAKAVLCPGVEIVFKDGVNDTE-------QRWCYQGGLSDYLCEAVNGL 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +  + F G           VEWA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 PTLPEKPFIGTIPGDTE---AVEWALLWLPEGGELLTESYVNLIPTLQGGTHVNGLRQGL 288

Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E      R + + ++D+      +LS+ +++P+FAGQTK +L S  +   V 
Sbjct: 289 LDAMREFCEFRNILPRGVKLSAEDIWERCAYVLSLKMQDPQFAGQTKERLSSRQSAAFVS 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             ++D F  +L QN   A +L E  I  ++ R+R    ++V RK       LPGKLADC+
Sbjct: 349 GVVKDAFSLWLNQNVQAAEQLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADCT 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+ 
Sbjct: 407 SQDLSKTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S      LRY KV I+ DAD DG HIA+LL   F +    L++  H+ +  P
Sbjct: 467 VAIGIDPDSDDL-SQLRYGKVCILADADSDGLHIATLLCALFVRHFRALVQGGHVHVAMP 525

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G +  YA DEE K  ILE+ K+  KGK  + RFKGLGEM   QL+ET +D N 
Sbjct: 526 PLYRIDLGKEVYYALDEEEKAGILEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPNT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDVG 685
           R L+++ IN+    ++ T  +++ L+  K A++R  ++QE+    + + 
Sbjct: 585 RRLVQLTINE--QDIEQTLATMDMLLAKKRAEDRRNWLQEKGDKAE-LD 630


>gi|110800719|ref|YP_696749.1| DNA topoisomerase IV subunit B [Clostridium perfringens ATCC 13124]
 gi|168205877|ref|ZP_02631882.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium
           perfringens E str. JGS1987]
 gi|168212894|ref|ZP_02638519.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium
           perfringens CPE str. F4969]
 gi|168215696|ref|ZP_02641321.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium
           perfringens NCTC 8239]
 gi|169343680|ref|ZP_02864679.1| DNA topoisomerase II (N-terminal region) [Clostridium perfringens C
           str. JGS1495]
 gi|110675366|gb|ABG84353.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium
           perfringens ATCC 13124]
 gi|169298240|gb|EDS80330.1| DNA topoisomerase II (N-terminal region) [Clostridium perfringens C
           str. JGS1495]
 gi|170662593|gb|EDT15276.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium
           perfringens E str. JGS1987]
 gi|170715591|gb|EDT27773.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium
           perfringens CPE str. F4969]
 gi|182382313|gb|EDT79792.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium
           perfringens NCTC 8239]
          Length = 648

 Score =  542 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 225/663 (33%), Positives = 353/663 (53%), Gaps = 36/663 (5%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            + ++NYD +S+  LE LEPVR+RPGMYIG T  K LHH   E++DN++DE+  GY N  
Sbjct: 2   SNKNNNYDVTSLTSLEKLEPVRVRPGMYIGSTGSKGLHHCIWEILDNSIDEISNGYGNKA 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V L+ +  +TV+DNGRGIP   HP    K+ +E++ T LH GGKF+N  Y+ SGGLHGV
Sbjct: 62  KVILNKDKSVTVIDNGRGIPTGMHP-IKKKTGVEMVFTELHTGGKFNNQNYKTSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTR 206
           G +VVNALS  L V V +   I+ Q+F             G P++PLE   + +   GT+
Sbjct: 121 GAAVVNALSRWLEVEVKQNGKIYRQRFEYAYDKELKKDMPGTPVTPLEVVGESKE-TGTK 179

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           +TF PD ++F   + F    + +  Q  A+ +  ++     +++            +Y  
Sbjct: 180 VTFLPDREVFST-SDFKFDIIDERLQELAFQNKGIRLELIDNRKEESVSKE-----YYSE 233

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCE-ENPEITSYCNTILT 324
            GL  ++    E+++ +       + EK+    +   E  + + +     I SY N I T
Sbjct: 234 RGLLDFIDYLNESKTPLHPTPVLFEGEKEVNNIQMYGEICLQFTDSTTENIVSYVNNIPT 293

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            E GTHE+G +  +TR  K++A+      ++      DDL      I+ + I  P F GQ
Sbjct: 294 TEAGTHETGFKTGMTRAFKEWAKKLNLIKEKDKEFEGDDLREGMTAIVRIKITNPVFEGQ 353

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TKTKL + +A   + +     F H++  N   AT ++   ++ +  R + +K  +  RK 
Sbjct: 354 TKTKLGNNEAYTMMNDLAYTKFGHWIEDNKEVATMIINNALDAAARREKIKKINDAERKK 413

Query: 443 AIRKL-RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    L GK+A C+       E  +VEGDSAGGSAKQAR+R  Q ++P +GKI+N   
Sbjct: 414 IGKGTAPLAGKVAVCTLKNKEANEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEK 473

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
              E +  ++++     A+G      Y EEDL+Y+K+IIM+DADVDG HI +L +T+ Y+
Sbjct: 474 QKLENVIASEELKIFNTAIGTGILDNYNEEDLKYDKIIIMSDADVDGYHIRTLWMTYIYR 533

Query: 562 EMYDLIEQKHLFLISPPLFRITQ----GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
            M  LI   HL+L  PPL+++ +      K +YA+ ++  +++ ++  K       I RF
Sbjct: 534 YMRPLIANGHLYLAQPPLYKVAKSGKGKDKILYAYSDDELEEVKKKVGKGA----TIQRF 589

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           KGLGEM   QL ET ++   RTL++V I          +  ++ LMG     R  ++ + 
Sbjct: 590 KGLGEMNPDQLWETTLNPETRTLVQVTIED----AAKAEKMVSLLMGDVVQPRKNYMYKY 645

Query: 678 ASF 680
           A F
Sbjct: 646 AEF 648


>gi|254238319|ref|ZP_04931642.1| topoisomerase IV subunit B [Pseudomonas aeruginosa C3719]
 gi|126170250|gb|EAZ55761.1| topoisomerase IV subunit B [Pseudomonas aeruginosa C3719]
          Length = 629

 Score =  542 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 244/647 (37%), Positives = 356/647 (55%), Gaps = 26/647 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+A +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V L 
Sbjct: 3   TYNADAIEVLSGLDPVRKRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHAKSVQVILH 59

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  L V+D+GRG+PV+ HP+      +E+ILT LHAGGKF N  Y+ SGGLHGVGISVV
Sbjct: 60  QDNSLEVIDDGRGMPVDIHPE-EGVPGVELILTKLHAGGKFSNKNYQFSGGLHGVGISVV 118

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221
           NALS  + V V R    +   F+ G   S LE    V +   GT + F PDPK F     
Sbjct: 119 NALSTRVEVRVKRDANEYRMTFADGFKDSDLEVIGTVGKRNTGTSVHFWPDPKYFDSA-K 177

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F  +RL  + ++KA L   +   +             E+ E++F  GL++YL   +    
Sbjct: 178 FSVSRLKHVLKAKAVLCPGLSVVFEDK-------NTGERVEWHFEDGLRSYLTDAVAELP 230

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALT 339
            +  E F G  E     +  V WA+ W  E  E    SY N I T +GGTH +GLR  L 
Sbjct: 231 RLPDEPFCGNLEG---SKEAVSWALLWLPEGGESVQESYVNLIPTAQGGTHVNGLRQGLL 287

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R + +  +D+      +LS+ ++EP+F+GQTK +L S +A   V  
Sbjct: 288 DAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSG 347

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L ++     +L E  I  +  RL+    ++V RK   +   LPGKLADC+ 
Sbjct: 348 VVKDAFSLWLNEHAEIGLQLAELAISNAGRRLK--AGKKVERKKITQGPALPGKLADCAG 405

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 ELF+VEGDSAGGSAKQAR++  QA++PLRGKILN       ++  +Q++ D+  
Sbjct: 406 QEPMRAELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNTWEVDGGEVLASQEVHDIAV 465

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+G           LRY K+ I+ DAD DG HIA+LL   F +    L+E  H+++  PP
Sbjct: 466 AIGVDPGVSDL-AQLRYGKICILADADSDGLHIATLLCALFVRHFRPLVEAGHVYVAMPP 524

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANK 637
           L+RI  G +  YA DE  +  ILE      K GK +++RFKGLGEM   QL+ET MD N 
Sbjct: 525 LYRIDLGKEIYYALDEAERDGILERLAAEKKRGKPQVTRFKGLGEMNPLQLRETTMDPNT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           R L+++ +     +L+        L   +A +R  +++ + +  + +
Sbjct: 585 RRLVQLTLEDATGTLEIMDML---LAKKRAGDRKSWLESKGNLAEVL 628


>gi|107104066|ref|ZP_01367984.1| hypothetical protein PaerPA_01005139 [Pseudomonas aeruginosa PACS2]
 gi|116053115|ref|YP_793435.1| DNA topoisomerase IV subunit B [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296391808|ref|ZP_06881283.1| DNA topoisomerase IV subunit B [Pseudomonas aeruginosa PAb1]
 gi|313109973|ref|ZP_07795899.1| topoisomerase IV subunit B [Pseudomonas aeruginosa 39016]
 gi|115588336|gb|ABJ14351.1| topoisomerase IV subunit B [Pseudomonas aeruginosa UCBPP-PA14]
 gi|310882401|gb|EFQ40995.1| topoisomerase IV subunit B [Pseudomonas aeruginosa 39016]
          Length = 629

 Score =  542 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 244/647 (37%), Positives = 357/647 (55%), Gaps = 26/647 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+A +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V L 
Sbjct: 3   TYNADAIEVLSGLDPVRKRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHAKSVQVILH 59

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  L V+D+GRG+PV+ HP+      +E+ILT LHAGGKF N  Y+ SGGLHGVGISVV
Sbjct: 60  QDNSLEVIDDGRGMPVDIHPE-EGVPGVELILTKLHAGGKFSNKNYQFSGGLHGVGISVV 118

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221
           NALS  + V V R    +   F+ G   S LE    V +   GT + F PDPK F     
Sbjct: 119 NALSTRVEVRVKRDANEYRMTFADGFKDSDLEVIGTVGKRNTGTSVHFWPDPKYFDSA-K 177

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F  +RL  + ++KA L   +   +             E+ E++F  GL++YL   +    
Sbjct: 178 FSVSRLKHVLKAKAVLCPGLSVVFEDK-------NTGERVEWHFEDGLRSYLTDAVAELP 230

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALT 339
            +  E F G  E     +  V WA+ W  E  E    SY N I T +GGTH +GLR  L 
Sbjct: 231 RLPDEPFCGNLEG---SKEAVSWALLWLPEGGESVQESYVNLIPTAQGGTHVNGLRQGLL 287

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R + +  +D+      +LS+ ++EP+F+GQTK +L S +A   V  
Sbjct: 288 DAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSG 347

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L ++     +L E  I  +  RL+    ++V RK   +   LPGKLADC+ 
Sbjct: 348 VVKDAFSLWLNEHAEIGLQLAELAISNAGRRLK--AGKKVERKKITQGPALPGKLADCAG 405

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 ELF+VEGDSAGGSAKQAR++  QA++PLRGKILN       ++  +Q++ D+  
Sbjct: 406 QEPMRAELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNTWEVDGGEVLASQEVHDIAV 465

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+G    +      LRY K+ I+ DAD DG HIA+LL   F +    L+E  H+++  PP
Sbjct: 466 AIGVDPGASDL-AQLRYGKICILADADSDGLHIATLLCALFVRHFRPLVEAGHVYVAMPP 524

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANK 637
           L+RI  G +  YA DE  +  ILE      K GK +++RFKGLGEM   QL+ET MD N 
Sbjct: 525 LYRIDLGKEIYYALDEAERDGILERLAAEKKRGKPQVTRFKGLGEMNPLQLRETTMDPNT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           R L+++ +     +L+        L   +A +R  +++ + +  + +
Sbjct: 585 RRLVQLTLEDATGTLEIMDML---LAKKRAGDRKSWLESKGNLAEVL 628


>gi|90407086|ref|ZP_01215275.1| DNA topoisomerase IV subunit B [Psychromonas sp. CNPT3]
 gi|90311808|gb|EAS39904.1| DNA topoisomerase IV subunit B [Psychromonas sp. CNPT3]
          Length = 629

 Score =  542 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 243/646 (37%), Positives = 352/646 (54%), Gaps = 26/646 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S+ Y++ SI +L GL+PVR RPGMY   T+    +HL  EVIDN++DE +AG+A  I+V 
Sbjct: 2   SEQYNSDSIEVLNGLDPVRHRPGMY---TETNRPNHLAQEVIDNSVDEALAGHATSIQVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  + V D+GRG+PV+ HP+    S +E+I   LHAGGKF    Y ISGGLHGVGIS
Sbjct: 59  LHEDQSIEVTDDGRGMPVDIHPE-EKISGVELIFCKLHAGGKFSGKNYAISGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V + R   ++   F  G  +  L++ +   +   GT + FRPDP  + D 
Sbjct: 118 VVNALSARVDVNIRRNAKVYHIAFEHGEKVEELKEIDTCGKRNTGTSVHFRPDP-RYFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
           A F  +RLL + ++KA L   +   +                 + +  GL  YL   +  
Sbjct: 177 AKFSVSRLLHLLKAKAVLCPGLSIKFKD-------RVNKNNYHWCYKDGLNDYLLEAVHE 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVA 337
             L+ +  F G+    G    TV+WAI W  E       SY N I T +GGTH +G R  
Sbjct: 230 NELLPATPFVGQLMANGE---TVDWAIVWLPEGGNSLSESYVNLIPTIQGGTHVNGFRQG 286

Query: 338 LTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ +  +   R I +  +D+      ILSV I+EP+FAGQ K +L S      +
Sbjct: 287 LLDAMREFCDIRSLLPRGIKLSPEDIWDKCAYILSVKIKEPQFAGQMKERLSSRQCVAFI 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L  +  EA +L  + I+ ++ R R  K ++V RK   +   LPGKL DC
Sbjct: 347 CGVVKDAFSLWLNAHVGEAEELALFCIQNAQIRSR--KSKKVARKKITQGPALPGKLTDC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S       ELF+VEGDSAGGSAKQAR+R  QA+LPLRGKI N     S+ I N+++I ++
Sbjct: 405 SCQEPERGELFLVEGDSAGGSAKQARDREFQAILPLRGKIKNTWEDDSDVILNSEEIYNI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY K+ I+ DAD DG HIA+L+   F +    +++  H ++  
Sbjct: 465 SIAIGIDPASNDL-SGLRYGKICILADADSDGLHIATLICALFVRHFRAVVDAGHFYVAM 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
           PPL+RI  G +  YA DE  K+ ILE    K+ + KI + RFKGLGEM   QL+ET MD 
Sbjct: 524 PPLYRIDAGKEVFYALDEGEKEIILERIANKNKRSKINVQRFKGLGEMNPDQLRETTMDP 583

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           N R L+++        L+        L   +A +R ++++     +
Sbjct: 584 NTRRLVQLTTEDSEKMLEVMDML---LAKKRAGDRKEWLETSGDML 626


>gi|300741336|ref|ZP_07071357.1| DNA gyrase, B subunit [Rothia dentocariosa M567]
 gi|300380521|gb|EFJ77083.1| DNA gyrase, B subunit [Rothia dentocariosa M567]
          Length = 700

 Score =  542 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 237/703 (33%), Positives = 343/703 (48%), Gaps = 62/703 (8%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A+ NY A  + +LEGLE VR RPGMYIG TD + L H   E+IDN++DE +AGY   I++
Sbjct: 2   AASNYTARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALAGYGQSIQI 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +G + V D+GRGIP +  P+    S LE++ T LHAGGKF   +Y  SGGLHGVG 
Sbjct: 62  ILYRDGSVEVQDDGRGIPTDVEPR-TGLSGLEVVFTKLHAGGKFGGGSYTASGGLHGVGA 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK----------------- 202
           SVVNALS  L V V R +  +   F  G+P      +                       
Sbjct: 121 SVVNALSSRLDVQVDRGSKTYQMSFRHGLPGVFDSGRTPKPEDSFTPADEKHPALQIVGR 180

Query: 203 -----RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
                 GTR+ +  DP+IF   A F    L+   +  ++L   ++     ++ I    G 
Sbjct: 181 AKRGVTGTRVRYWADPQIFTPDARFSYEDLVARARQTSFLIPGLRIAIRDERRIPGTPGE 240

Query: 258 --PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHR 299
             P +E F   GG+  +++    + ++     F+G+                   +    
Sbjct: 241 FGPYEEVFQHDGGISEFVEFLAHDSAVTDIWRFSGRGSFTETVPVLGSDGRSKLTEVDRE 300

Query: 300 GTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--- 355
             V+ A+ W         S+ N I T +GGTH +G    L +  +K+      K  +   
Sbjct: 301 CEVDIALRWGIGYETTIRSFVNIIATPKGGTHATGFEQGLLKTFRKHLADNARKFKVGND 360

Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN---- 411
            I  DD +     +L+V + EP+F GQTK  L +   ++ V   + D     L       
Sbjct: 361 KIEKDDALAGLTAVLTVRLAEPQFEGQTKEILGTPAVRQIVSKVVGDQLKARLNSTARAE 420

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
             +A  L E V+   + R+  R  +E   RKTA+    +P KL DC       +ELFIVE
Sbjct: 421 KAQAAALCEKVVSEMKTRISARIHKETQRRKTALESSSMPTKLVDCRSTNVEHSELFIVE 480

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530
           GDSA G+A+ AR+ + QA+LP+RGKILN   A    +  N +   L+Q +G  +   +  
Sbjct: 481 GDSALGTARLARSSAYQALLPIRGKILNTQRASVTDMLANAECAALIQVIGAGSGRTFEL 540

Query: 531 EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT-----QG 585
           E  RY KVI+MTDADVDGAHI +LLLT  Y+ M  LIE   ++   PPL R+      + 
Sbjct: 541 EAARYSKVIMMTDADVDGAHIRTLLLTLMYRYMRPLIEDGRVYAAVPPLHRVEVINRGKP 600

Query: 586 TKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644
            + VY + E    ++L + +  GKG K  I R+KGLGEM A QL ET MD   R L R+ 
Sbjct: 601 NEMVYTYSERQLHELLSQLQAEGKGYKEPIQRYKGLGEMDADQLAETTMDPRHRMLRRIR 660

Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI--DDVG 685
           I       +  + + + LMG +   R +FI   A  +  D++ 
Sbjct: 661 IED----AEAAEQAFSLLMGAEVAPRKEFIIAGAHQLDQDNID 699


>gi|56461054|ref|YP_156335.1| DNA topoisomerase IV subunit B [Idiomarina loihiensis L2TR]
 gi|56180064|gb|AAV82786.1| DNA topoisomerase IV subunit B [Idiomarina loihiensis L2TR]
          Length = 630

 Score =  542 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 243/646 (37%), Positives = 359/646 (55%), Gaps = 28/646 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y + SI +L GLEPV+ RPGMY   TD    +HL  EVIDN++DE +AG+A  + V L 
Sbjct: 3   DYKSDSIEVLNGLEPVQRRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHAKSLLVILH 59

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  L   D+GRG+PV+ HP+      +E+I++ LHAGGKF N  Y+ SGGLHGVGISVV
Sbjct: 60  PDQSLETTDDGRGMPVDIHPE-EGVPGVELIMSKLHAGGKFSNKNYQFSGGLHGVGISVV 118

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221
           NALS  + +T+ R   ++   +  G  +S LE    V +   GTR+ F PDP+ F     
Sbjct: 119 NALSKRVELTIKRDGQVYEMAYENGDKVSELEVTGTVGKRNTGTRVHFWPDPQYFDSA-K 177

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F   +L  + ++KA L   +K  +    +  E         +++  GL  YL   +++  
Sbjct: 178 FSVTKLKHILRAKAVLCPGLKITFRNKIDDTEDT-------WFYQDGLTDYLVEAVKDVP 230

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALT 339
            +    F G      +    V+WA+ W  E  E    SY N I T  GGTH +GLR  L 
Sbjct: 231 TLPEMPFDGSFS---SQTEGVDWAVTWLPEGGEGVSESYVNLIPTTLGGTHVNGLRQGLL 287

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R + +  +D+      ILS  +++P+FAGQTK +L S  +   V  
Sbjct: 288 EAMREFCEFRNLLPRGVKLTPEDVWERCSYILSTKMQDPQFAGQTKERLSSRQSASFVSG 347

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L ++  +A  L +  I  ++ RL+    ++V RK   +   LPGKL DCS 
Sbjct: 348 VVKDAFSLWLNEHTDQAELLADVCISNAQRRLK--ASKKVVRKKVTQGPALPGKLTDCSS 405

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +ELF+VEGDSAGGSAKQAR+R  QAV+PLRGKILN      E+I  +Q+I D+  
Sbjct: 406 QEPGRSELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVDPEQILGSQEIHDISV 465

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+G    S    + LRY K+ I+ DAD DG HIA+LL   F +    L+E  H+F+  PP
Sbjct: 466 AVGVDPNSVDL-DKLRYGKICILADADSDGLHIATLLCALFVKHFRPLVEHGHIFVAMPP 524

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANK 637
           L+R+  G +  YA DE  KQ IL+  +    KGK+ + RFKGLGEM    L+ET MD N 
Sbjct: 525 LYRVDVGKEVFYALDEAEKQGILDRIEAEKRKGKVNVQRFKGLGEMNPLTLRETTMDPNT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++ I+      +  ++ ++ L+  K A +R  +++ + +  D
Sbjct: 585 RRLVQLTIDDG----EVMEELMDMLLAKKRAGDRRTWLESKGNMAD 626


>gi|294815531|ref|ZP_06774174.1| DNA topoisomerase IV subunit B [Streptomyces clavuligerus ATCC
           27064]
 gi|294328130|gb|EFG09773.1| DNA topoisomerase IV subunit B [Streptomyces clavuligerus ATCC
           27064]
          Length = 739

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 241/726 (33%), Positives = 359/726 (49%), Gaps = 53/726 (7%)

Query: 3   DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRP 62
           D    L      + Q  + ++     +P +     +    NY A  + +LEGLE VR RP
Sbjct: 15  DRRRALPHRATSEIQRGANRVTAETSVPSTTLLTAERDGSNYTARHLLVLEGLEAVRKRP 74

Query: 63  GMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122
           GMYIG TD + L H   E+IDN++DE + GY + IEV L  +G + V DNGRGIPV+  P
Sbjct: 75  GMYIGSTDSRGLMHCLWEIIDNSVDEALGGYCDHIEVILHDDGSVEVRDNGRGIPVDVEP 134

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
           K    S +E+++T LHAGGKF   +Y  SGGLHGVG SVVNALS  L V V R  +  + 
Sbjct: 135 K-TGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGASVVNALSARLDVEVDRNGSTHAI 193

Query: 183 KFSRGIPLSPLEKKEKV---------------RNKRGTRITFRPDPKIFGDKAGFDAARL 227
            F RG+P    E+                   + + GTR+ +  D +IF  +A      L
Sbjct: 194 SFRRGVPGIFTEQGPDAPFDPANGLRKGKRVPKTRTGTRVRYWTDRQIFLKEARLALETL 253

Query: 228 LKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEI 287
            +  +  A+L   +      ++++A +     +E F F GG+  + +   +++++     
Sbjct: 254 HQRARQTAFLVPGLTIVVRDERDLAGEG--KSQEIFRFDGGISEFCEYLAQDKAVCDVLR 311

Query: 288 FTGKTE----------------KKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTH 330
            TG+                   + T    V+ A+ W       + S+ N I T +GGTH
Sbjct: 312 LTGQGTFKETVPVLDDRGHMTPTEVTRELGVDIALRWGTGYDTAVRSFVNIIATPKGGTH 371

Query: 331 ESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G   ++T+ + +     +  R        DD +     +++V + EP+F GQTK  L 
Sbjct: 372 VTGFERSVTKTVNEVLRSAKLLRVAEDDIVKDDALEGLTAVVTVRLAEPQFEGQTKEVLG 431

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER-----SEERLRRRKQREVNRKTA 443
           +  A R V N +      +L     +A      V+E+           R+ +    RKTA
Sbjct: 432 TSAANRIVSNVVARELKAFLTSTKRDAKAQARAVLEKAVAAARTRIAARQHKEAQRRKTA 491

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LP KLADC  +    +ELFIVEGDSA G+AK ARN   QA+LP+RGKILNV  + 
Sbjct: 492 LETSSLPAKLADCRSDDVERSELFIVEGDSALGTAKLARNSEFQALLPIRGKILNVQKSS 551

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
              +  N +   ++Q +G  +   +  +  RY K++++ DADVDGAHI  LLLT F + M
Sbjct: 552 VSDMLKNAECGAIIQVIGAGSGRTFDLDAARYGKIVLLVDADVDGAHIRCLLLTLFQRYM 611

Query: 564 YDLIEQKHLFLISPPLFRI-----TQGT-KSVYAHDEEHKQKILEEFKKHG-KGKIEISR 616
             ++E   +F   PPL RI      +G  K VY + +   ++ L EF++ G + K  I R
Sbjct: 612 RPMVEAGRVFAAVPPLHRIELVQPKKGQDKYVYTYSDNELRQTLLEFQRKGVRYKDSIQR 671

Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           +KGLGEM A QL ET MD   RTL R+ I      L   +   + LMG +   R +FI  
Sbjct: 672 YKGLGEMDADQLAETTMDPRHRTLRRINIGD----LDAAEQVFDLLMGNEVAPRKEFITS 727

Query: 677 RASFID 682
            A+ +D
Sbjct: 728 SAATLD 733


>gi|149377750|ref|ZP_01895484.1| DNA topoisomerase IV subunit B [Marinobacter algicola DG893]
 gi|149357976|gb|EDM46464.1| DNA topoisomerase IV subunit B [Marinobacter algicola DG893]
          Length = 631

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 253/649 (38%), Positives = 366/649 (56%), Gaps = 28/649 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           +   Y+A +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A  I+V
Sbjct: 2   SQKQYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHARRIDV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +G L+V D+GRG+PV+ H +      +E+ILT LHAGGKF    Y  SGGLHGVG+
Sbjct: 59  ILHSDGSLSVEDDGRGMPVDMHKEH-GVPGVELILTRLHAGGKFSQGNYNFSGGLHGVGV 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS  L V++ R   +    F+ G   + L   + V +   GTR+ F PDP  F  
Sbjct: 118 SVVNALSTHLEVSIKRDGQLHQMTFANGHKETDLTVVDSVGKRNTGTRLKFTPDPSYFDS 177

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F  +RL    ++KA L   +   +  +          +K+E+ + GGL+ YL+T+L 
Sbjct: 178 P-KFSVSRLRHNLRAKAVLCPGLNVTFLQE-------HTGDKDEWCYEGGLRDYLRTELA 229

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336
           +   +  E FTG        +  V+WA  W  E  E  + SY N I T +GGTH +GLR 
Sbjct: 230 DIEAVPLEPFTGSFSGN---KEAVDWAFQWLPEGGEAVMESYVNLIPTAQGGTHVNGLRT 286

Query: 337 ALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            L   ++++ E      R + +  +D+      +LS  ++EP+F+GQTK +L S +A   
Sbjct: 287 GLLEAMREFCEFRNLLPRGVKLSPEDIWERCAYVLSFKMQEPQFSGQTKERLSSREAAAF 346

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           +   ++D F  +L Q+   A  L E  I  ++ RLR    ++V RK       LPGKLAD
Sbjct: 347 ISGVVKDAFSLWLNQHTDIAEALAELFISNAQRRLR--ASKKVARKKVTSGPALPGKLAD 404

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS +  + +ELF+VEGDSAGGSAKQAR+R  QAV+PLRGKILN     S +I  +Q++ D
Sbjct: 405 CSGSDTNRSELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVDSSEILASQEVHD 464

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  A+G    S    E LRY K+ I+ DAD DG HIA+LL   F +    ++   H+F+ 
Sbjct: 465 IAVAIGVDPGSDKL-EGLRYNKICILADADSDGLHIATLLCALFVKHFRPVVAAGHVFVA 523

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMD 634
            PPL+R+  G ++ YA DE  KQ I++       +GKI ++RFKGLGEM   QL+ET M 
Sbjct: 524 MPPLYRVDLGKETFYALDEHEKQGIIDRLAAENRRGKISVTRFKGLGEMNPLQLRETTMA 583

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            + R L+ + I        DT   ++ L+G K A +R  +++   +  D
Sbjct: 584 PDTRRLVMLTIEDG----DDTDSRMDMLLGKKRASDRRTWLETYGNMAD 628


>gi|254497819|ref|ZP_05110586.1| DNA topoisomerase IV subunit B [Legionella drancourtii LLAP12]
 gi|254352950|gb|EET11718.1| DNA topoisomerase IV subunit B [Legionella drancourtii LLAP12]
          Length = 629

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 246/646 (38%), Positives = 355/646 (54%), Gaps = 25/646 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S+NY A +I +L GLEPV+ RPGMY   TD    +HL  EVIDN++DEV+AG+A  I V+
Sbjct: 4   SENYTAQAIEVLSGLEPVQRRPGMY---TDTTRPNHLAQEVIDNSVDEVLAGFATHITVT 60

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +G + V D+GRG+PV+ HP+    S +E+I+T LHAGGKF +  Y  SGGLHGVG+S
Sbjct: 61  LHEDGSVEVEDDGRGMPVDLHPQL-GLSGVEVIMTRLHAGGKFSDKNYSFSGGLHGVGVS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPDPKIFGDK 219
           VVNALSD L VT+ R   ++   F+ G     L +    + +  GT I F P+ K F   
Sbjct: 120 VVNALSDRLEVTIKRNGIVYQMSFANGDKTCELNEIGITKKRDTGTTIRFWPNAKYFDTT 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
                  L  + ++KA L   +   +       E         + +  GL  Y+   L +
Sbjct: 180 R-ISIKHLTHILRAKAVLCTGLSMTFINKTNNEE-------SHWCYEHGLVDYMNQSLGD 231

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWA--IAWCEENPEITSYCNTILTDEGGTHESGLRVA 337
              +  E F G+ +       TV+WA   +         SY N I T +GGTH +G R  
Sbjct: 232 GDYLPEEPFAGEFKSDD---ATVDWALVWSNGASAGFSESYVNLIPTIQGGTHVNGFRSG 288

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   + ++ EL     R + + +DDL      +LS+ ++EP+FAGQTK +L S      V
Sbjct: 289 LFEAMNEFCELRNLLPRGVKLAADDLWEPCQYVLSIKMKEPQFAGQTKERLSSRQISAVV 348

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
            N ++D F  +L Q+  +   +    IER++ RL+  + ++V RK   +   LPGKLADC
Sbjct: 349 SNVVKDAFALWLNQHRNQGEAIASLAIERAQRRLK--QAKQVARKRVSQGPALPGKLADC 406

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            Q      ELF+VEGDSAGGSAKQARN+  QA+LPLRGKILN     S ++  +Q+I D+
Sbjct: 407 LQTDLSQAELFLVEGDSAGGSAKQARNKDFQAILPLRGKILNSWEVDSSQVLASQEIHDI 466

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY KV I+ DAD DGAHIA+L+   F +    L++  H+F+  
Sbjct: 467 SVAIGVDPGSIDL-TGLRYGKVCILADADSDGAHIATLICALFLRHFKPLVQAGHVFVAM 525

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G    YA D+E K ++L    +  K K  + RFKGLGEM   QL+ET MD N
Sbjct: 526 PPLYRIDAGKIVHYALDDEEKNRLLSHLAQTSKAKANVQRFKGLGEMNPIQLRETTMDPN 585

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            R L+++ +  +  +       +NK    +A +R  +++ + +  +
Sbjct: 586 TRRLVQLTLEDEEGAEAIMDMMLNK---KRAGDRKIWLETKGNLAE 628


>gi|320104795|ref|YP_004180386.1| DNA topoisomerase IV subunit B [Isosphaera pallida ATCC 43644]
 gi|319752077|gb|ADV63837.1| DNA topoisomerase IV subunit B [Isosphaera pallida ATCC 43644]
          Length = 652

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 274/661 (41%), Positives = 385/661 (58%), Gaps = 20/661 (3%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
            S   +  +AS NY + SI +LEGLEPVR RPGMYIGG D+  LHHL  E++DNA+DEV+
Sbjct: 5   TSSPGSRSAASTNYTSESITVLEGLEPVRKRPGMYIGGLDKAGLHHLCWEIVDNAIDEVM 64

Query: 91  AGYANLIEVSLDGNG-FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
            G+A+ I V L+ +G  L+V DNGRGIPV+ H K   KS LE+I TTLHAGGKFDN+ Y+
Sbjct: 65  NGHASRIVVELEADGRTLSVSDNGRGIPVDLHAK-TGKSALEVIFTTLHAGGKFDNNAYK 123

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           ++GGLHGVG SVVNALS+ L V V R    FSQ + RG P S + K  +     GT + F
Sbjct: 124 VAGGLHGVGASVVNALSERLEVKVKRDGFHFSQTYQRGKPTSEVVK-GEPARGTGTTVRF 182

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD +IF D+  FD   + +    KAYL+  +   +   K          + E+   GG+
Sbjct: 183 TPDREIFHDQV-FDPVLIGERLDIKAYLNKGLSIQFVDRK-------AGTQVEYRHDGGV 234

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRG-TVEWAIAWCE-ENPEITSYCNTILTDEG 327
             +L      R+ +         E+     G  +  A+AW E  +  + S+ NTI T +G
Sbjct: 235 ADFLNEIHRRRNDVKVAPTVFVLERDDPREGLRLHLALAWTEATDEHVLSFVNTIPTRDG 294

Query: 328 GTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           GTHE G+R A+++ ++K+       K+ + I  +D+      +LSV I EP+F GQTK +
Sbjct: 295 GTHEQGMREAVSKAVRKFFADHDLLKKGMEIKGEDIREGLTAVLSVNIAEPQFQGQTKGR 354

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK--QREVNRKTAI 444
           L + + +  VE+A+R   + +  +N      + E VI+    R   R    +   +   +
Sbjct: 355 LNNPEVRALVESAIRPRLEDFFHKNKSVGEAVAERVIQAWRAREASRAAANQARRKSPVV 414

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
            +L LPGKL DC  +    +ELF+VEGDSAGGSAKQ R+R  QA+LPL+GK+LN   AG 
Sbjct: 415 GRLTLPGKLHDCDSSKVEESELFLVEGDSAGGSAKQGRDRRIQAILPLKGKVLNAEQAGR 474

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
            K+ +N+++ D+V ALGC    QY    LRY K+I++TDAD DG HIA+LLLTFFY+ + 
Sbjct: 475 AKVLDNKELSDIVSALGCGMDDQYDPSRLRYGKIILLTDADSDGHHIATLLLTFFYRHLP 534

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
            L+ +  +FL  PPL++IT G  + +A DE  K  IL +  K+   KI ++RFKGLGEM 
Sbjct: 535 GLLNEGRVFLACPPLYKITHGQDTYWAADEAAKAAILAKLPKN--AKITMTRFKGLGEMP 592

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           A  L ET +D  +R LL+V +            +I  LMG   + RF+FI E A    D+
Sbjct: 593 AKLLFETTLDPARRRLLKVVVPD--EDRHYVDSTITDLMGKDPEPRFRFIMEEAYNARDI 650

Query: 685 G 685
            
Sbjct: 651 D 651


>gi|297562245|ref|YP_003681219.1| DNA topoisomerase (ATP-hydrolyzing) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296846693|gb|ADH68713.1| DNA topoisomerase (ATP-hydrolyzing) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 701

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 240/692 (34%), Positives = 335/692 (48%), Gaps = 59/692 (8%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           ++Y A  + +LEGLE VR RPGMYIG TD + L H   E+IDN++DE + G+   I+V+L
Sbjct: 12  EDYSARHLSVLEGLEAVRKRPGMYIGSTDSRGLTHCMWEIIDNSVDEALGGFCTRIDVTL 71

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G ++V D+GRGIPV+  PK    S +E+++T LHAGGKF + +Y  SGGLHGVG SV
Sbjct: 72  HSDGSVSVSDDGRGIPVDAEPK-SGLSGVELVMTKLHAGGKFGSGSYTASGGLHGVGASV 130

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR---------------NKRGTR 206
           VNALS  + V V RQ    +  F RGIP                             GTR
Sbjct: 131 VNALSSRVDVEVDRQGRTHAISFRRGIPGRFAGSGPDAEFTPVSGLEQVRKVAQKITGTR 190

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F PD +IF   A      LL   +  A+L   +      ++   E       EEF F 
Sbjct: 191 IRFWPDMQIFLKDADIAREALLDRARQTAFLVPGLTLSVRDERVEGEPAHE---EEFRFD 247

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTVEWAIAWCE 310
           GG+  +      +  +       G                        R  V+ A+ W  
Sbjct: 248 GGIGEFCTFLAPDEPVSDVLRIQGSGNFTETVPVLDDAGHMVPADVERRLDVDVALRWGT 307

Query: 311 ENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAV 367
                  S+ N I T +GGTH +G   AL R I +    T+  R        DD      
Sbjct: 308 GYDTTVRSFVNVIATPKGGTHINGFERALVRVINEQLRTTKLLRNSDDPVTKDDTQEGLT 367

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL----LEWVI 423
            +++V + EP+F GQTK  L +  A R V   +      +L              LE V+
Sbjct: 368 AVVTVRLPEPQFEGQTKEILGTSAATRIVSQVVGKELREFLTSTKKVEKARARSVLEKVV 427

Query: 424 ERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
             ++ RL  R+QRE   RKTA+    LP KL DC       +ELFIVEGDSA G+AK AR
Sbjct: 428 GAAKARLAARQQRETQRRKTALENSALPAKLVDCRSEGLEHSELFIVEGDSALGTAKLAR 487

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           +   QA+LP+RGKILNV  +    +  N +   ++Q +G  +   +  +  RY ++I+M 
Sbjct: 488 DSEFQALLPIRGKILNVQKSSVADMLKNAECAAILQVVGAGSGRTFDIDAARYGRIILMA 547

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-------TQGTK----SVYA 591
           DADVDGAHI  LLLT  Y+ M  ++E   ++   PPL RI        +G+K     VY 
Sbjct: 548 DADVDGAHIRCLLLTLIYRYMRPMLEAGRVYAAVPPLHRIELTNTRRKRGSKPEDRYVYT 607

Query: 592 HDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
           + +    + L + +K     K  + R+KGLGEM A QL ET MD   RTL R+ + +   
Sbjct: 608 YSDAELSRTLLDLEKRKISWKEPVQRYKGLGEMDADQLAETTMDPRYRTLRRIRVEQ--- 664

Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFID 682
             ++     N LMG +   R +FIQ+ A  +D
Sbjct: 665 -AEEASSVFNLLMGNEVAPRRRFIQQGAQELD 695


>gi|218894062|ref|YP_002442931.1| DNA topoisomerase IV subunit B [Pseudomonas aeruginosa LESB58]
 gi|218774290|emb|CAW30107.1| topoisomerase IV subunit B [Pseudomonas aeruginosa LESB58]
          Length = 629

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 244/647 (37%), Positives = 356/647 (55%), Gaps = 26/647 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+A +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V L 
Sbjct: 3   TYNADAIEVLSGLDPVRKRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHAKSVQVILH 59

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  L V+D+GRG+PV+ HP+      +E+ILT LHAGGKF N  Y+ SGGLHGVGISVV
Sbjct: 60  QDNSLEVIDDGRGMPVDIHPE-EGVPGVELILTKLHAGGKFSNKNYQFSGGLHGVGISVV 118

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221
           NALS  + V V R    +   F+ G   S LE    V +   GT + F PDPK F     
Sbjct: 119 NALSTRVEVRVKRDANEYRMTFANGFKDSDLEVIGTVGKRNTGTSVHFWPDPKYFDSA-K 177

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F  +RL  + ++KA L   +   +             E+ E++F  GL++YL   +    
Sbjct: 178 FSVSRLKHVLKAKAVLCPGLSVVFEDK-------NTGERVEWHFEDGLRSYLTDAVAELP 230

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALT 339
            +  E F G  E     +  V WA+ W  E  E    SY N I T +GGTH +GLR  L 
Sbjct: 231 RLPDEPFCGNLEG---SKEAVSWALLWLPEGGESVQESYVNLIPTAQGGTHVNGLRQGLL 287

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R + +  +D+      +LS+ ++EP+F+GQTK +L S +A   V  
Sbjct: 288 DAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSG 347

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L ++     +L E  I  +  RL+    ++V RK   +   LPGKLADC+ 
Sbjct: 348 VVKDAFSLWLNEHAEIGLQLAELAISNAGRRLK--AGKKVERKKITQGPALPGKLADCAG 405

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 ELF+VEGDSAGGSAKQAR++  QA++PLRGKILN       ++  +Q++ D+  
Sbjct: 406 QEPMRAELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNTWEVDGGEVLASQEVHDIAV 465

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+G    +      LRY K+ I+ DAD DG HIA+LL   F +    L+E  H+++  PP
Sbjct: 466 AIGVDPGASDL-AQLRYGKICILADADSDGLHIATLLCALFVRHFRPLVEAGHVYVAMPP 524

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANK 637
           L+RI  G    YA DE  +  ILE      K GK +++RFKGLGEM   QL+ET MD N 
Sbjct: 525 LYRIDLGKDIYYALDEAERDGILERLAAEKKRGKPQVTRFKGLGEMNPLQLRETTMDPNT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           R L+++ +     +L+        L   +A +R  +++ + +  + +
Sbjct: 585 RRLVQLTLEDATGTLEIMDML---LAKKRAGDRKSWLESKGNLAEVL 628


>gi|212711189|ref|ZP_03319317.1| hypothetical protein PROVALCAL_02261 [Providencia alcalifaciens DSM
           30120]
 gi|212686357|gb|EEB45885.1| hypothetical protein PROVALCAL_02261 [Providencia alcalifaciens DSM
           30120]
          Length = 631

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 250/645 (38%), Positives = 362/645 (56%), Gaps = 24/645 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y+A  I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  I+V L
Sbjct: 4   SSYNAEDIEVLSGLEPVRRRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHAGHIQVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V+D+GRG+PV+ HP+    S +E+IL  LHAGGKF N  Y+ SGGLHGVGISV
Sbjct: 61  YPDQSLEVIDDGRGMPVDIHPEM-KVSAVELILGQLHAGGKFSNKNYQFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + VTV R   ++   F  G  +  L+      +   GT + F PD + + D  
Sbjct: 120 VNALSKRIEVTVRRDGQVYQIAFENGDKVEDLQVIGTCGKRNTGTSVHFWPD-ESYFDSP 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL    ++KA L   V+  +       E       + + +  GL  YL   ++  
Sbjct: 179 RFSVSRLTHNLKAKAVLCPGVQITFKDLLNDTE-------QSWCYSDGLTDYLMESVDGF 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             + ++ FTG+   +       +WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 EALPAKPFTGEFSAEVE---AAQWALLWLPEGGELLTESYVNLIPTAQGGTHVNGLRQGL 288

Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E      R + + +DD+      +LSV +++P+FAGQTK +L S      V 
Sbjct: 289 LDAMREFCEFRNILPRGVKLSADDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             ++D F  +L QN   A +L E  I  ++ RLR    ++V RK       LPGKLADCS
Sbjct: 349 GVVKDAFSLWLNQNVQVAEQLAEMAISSAQRRLR--ASKKVVRKKLTSGPALPGKLADCS 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     S+++  +Q++ D+ 
Sbjct: 407 SQDLSMTELFLVEGDSAGGSAKQARDREYQAIMPLRGKILNTWEVSSDEVLASQEVHDIS 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S+     LRY KV I+ DAD DG HIA+LL   F +    L+++ H+++  P
Sbjct: 467 VAIGMDPDSEDI-SQLRYGKVCILADADSDGLHIATLLCALFVRHFPKLVKEGHVYMAMP 525

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G ++ YA DE  K  +L+   +  KGK  + RFKGLGEM   QL+ET +D N 
Sbjct: 526 PLYRIDLGKETYYALDESEKNAVLDRLSRK-KGKPNVQRFKGLGEMNPPQLRETTLDPNT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           R L+++ I+ D N  +        L   ++++R  ++QE+    +
Sbjct: 585 RRLVQLTIDDD-NYTETMSKMDMLLAKKRSEDRRNWLQEKGDTAE 628


>gi|89075922|ref|ZP_01162297.1| DNA topoisomerase IV subunit B [Photobacterium sp. SKA34]
 gi|89048363|gb|EAR53941.1| DNA topoisomerase IV subunit B [Photobacterium sp. SKA34]
          Length = 627

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 260/646 (40%), Positives = 368/646 (56%), Gaps = 28/646 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  +EV L
Sbjct: 4   QSYNAGAIEVLNGLEPVRRRPGMY---TDTARPNHLGQEVIDNSVDEALAGHARKVEVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L VVD+GRG+PV+ HP+    S +E+IL  LHAGGKF +  Y+ SGGLHGVGISV
Sbjct: 61  HADQSLEVVDDGRGMPVDIHPE-EGVSGVELILCKLHAGGKFSSKNYQFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + VTV R   ++   F  G  +S LE      R  +GTR+ F PD K F    
Sbjct: 120 VNALSKRVEVTVKRDGQVYQIAFENGDKVSELEVIGTCGRRAKGTRVHFWPDAKYFDSA- 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL    ++KA L   ++  ++            E   + +  GLK YL   ++  
Sbjct: 179 KFSVSRLKSNLKAKAVLCPGLEIVFTNK-------ITDETIRWCYEDGLKDYLAEGVKGY 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
           +L+  E FTG            +WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 TLLPEEPFTGVFSA---QTEAADWALLWLPEGGELITESYVNLIPTAQGGTHVNGLRQGL 288

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E      R + + +DD+      +LSV I++P+FAGQTK +L S      V 
Sbjct: 289 LDAMREFCEFRNLLPRGVKLTADDIWERCAYVLSVKIQDPQFAGQTKERLSSRQCAAFVS 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             ++D F  +L + P  A +L E  I  +  R+R    ++V RK       LPGKLADCS
Sbjct: 349 GVVKDAFSLWLNERPQLAEQLAEVCIANAHRRMR--ASKKVVRKKIASGPALPGKLADCS 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           Q   + TELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     S+++  ++++ ++ 
Sbjct: 407 QQDLNRTELFLVEGDSAGGSAKQARDRMYQAIMPLRGKILNTWEVSSDQVLASEEVHNIS 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG    S+     LRY K+ ++ DAD DG HIA+LL   F +    L+   H+F+  P
Sbjct: 467 IALGIDPDSEDL-SGLRYGKICVLADADSDGLHIATLLCALFMKHFEHLVRAGHVFIAMP 525

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G +  YA DE  K  ILE  K   +GK+ + RFKGLGEM   QL+ET MD N 
Sbjct: 526 PLYRIDLGKEVYYALDEAEKNSILERLKGK-RGKVNVQRFKGLGEMNPLQLRETTMDPNT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++ I+ D     +T + ++ L+G K A++R  ++Q +    +
Sbjct: 585 RRLVQLTIDDDN----ETNEMMDMLLGKKRAEDRRHWLQSKGDMAE 626


>gi|139439853|ref|ZP_01773218.1| Hypothetical protein COLAER_02252 [Collinsella aerofaciens ATCC
           25986]
 gi|133774781|gb|EBA38601.1| Hypothetical protein COLAER_02252 [Collinsella aerofaciens ATCC
           25986]
          Length = 650

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 242/662 (36%), Positives = 342/662 (51%), Gaps = 51/662 (7%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIG T    LHHL  E++DN++DE +AG+   I+V++  +  +TVVDNGRGIPV+ HP 
Sbjct: 1   MYIGSTSASGLHHLVWEIVDNSVDEAMAGFCTEIQVTVHADNSITVVDNGRGIPVDEHP- 59

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
                TLE+++T LHAGGKFDNS Y++SGGLHGVGISVVNALS  + V V R    +  +
Sbjct: 60  VKKIPTLEVVMTILHAGGKFDNSAYKVSGGLHGVGISVVNALSKRVVVQVRRDGNTYEME 119

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           FSRG  +  +E      +  GT +TF PD +IF     +D   L    Q  A+L+  +K 
Sbjct: 120 FSRGKTVKKMEVVG-TSDSTGTTVTFWPDDEIFETCI-YDFDTLHNRLQETAFLNKNLKI 177

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS--SEIFTGKTEKKGT---- 297
             + ++E       P  EEF + GG+  +++   E + +     E    + +        
Sbjct: 178 VLTDERE-----ATPHVEEFCYEGGIIDFVKFLNEGKDVPEAFKEPIYIEGKSDPDAPVA 232

Query: 298 HRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
             G VE ++ W     E   S+ N I T EGG H  G R ALTR I  YA       ++ 
Sbjct: 233 KMGEVEVSLQWNSGYGENVMSFANDIYTPEGGMHLEGFRTALTRVINDYARKQNLLKEKD 292

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
            ++  DD+      ++SV + +P+F GQTK KL S   +      + D    YL ++P  
Sbjct: 293 ANLTGDDVREGLSAVISVKLPDPQFEGQTKAKLGSSYMRALTLKIVTDGLVDYLEEHPKP 352

Query: 415 ATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A ++++   +  + R   RK RE  R+ + +    LPGKLADCS   A  TELFIVEGDS
Sbjct: 353 AREIVKKAQQACKARNAARKAREATRRKSLLETASLPGKLADCSVRDAELTELFIVEGDS 412

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS------Q 527
           AGGSAK  R R  QA+LPLRGKILNV   G  +  ++  I  L+ A+GC   +       
Sbjct: 413 AGGSAKDGRRRDIQAILPLRGKILNVERVGDHRAFSSDTIQSLITAIGCGVTTSAGDGGD 472

Query: 528 YREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTK 587
           +     RY K+IIMTDADVDGAHI  LLLTFFY+ M  LI+  ++++  PP+F I    K
Sbjct: 473 FDITKARYHKIIIMTDADVDGAHIRILLLTFFYKYMRPLIDAGYVYVACPPIFGIKVRNK 532

Query: 588 SVYAH-----------------------DEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
             Y +                       D +   K  +      +    + R+KGLGEM 
Sbjct: 533 IHYVYPNGRQPEDEILRDTIQSLGLNPDDNDEDGKAKDGKITKKRKGYTVQRYKGLGEMD 592

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
             QL  T MD   R L RV I   +        ++ +LMG++   R ++I++ A     +
Sbjct: 593 PKQLASTTMDPKTRILQRVSIEDAVV----ADRAVRELMGSEVGYRREYIEKHAHDARFL 648

Query: 685 GT 686
             
Sbjct: 649 DA 650


>gi|18311051|ref|NP_562985.1| DNA topoisomerase IV subunit B [Clostridium perfringens str. 13]
 gi|18145733|dbj|BAB81775.1| DNA topoisomerase IV subunit B [Clostridium perfringens str. 13]
          Length = 650

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 225/663 (33%), Positives = 353/663 (53%), Gaps = 36/663 (5%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            + ++NYD +S+  LE LEPVR+RPGMYIG T  K LHH   E++DN++DE+  GY N  
Sbjct: 4   SNKNNNYDVTSLTSLEKLEPVRVRPGMYIGSTGSKGLHHCIWEILDNSIDEISNGYGNKA 63

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V L+ +  +TV+DNGRGIP   HP    K+ +E++ T LH GGKF+N  Y+ SGGLHGV
Sbjct: 64  KVILNKDKSVTVIDNGRGIPTGMHP-IKKKTGVEMVFTELHTGGKFNNQNYKTSGGLHGV 122

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTR 206
           G +VVNALS  L V V +   I+ Q+F             G P++PLE   + +   GT+
Sbjct: 123 GAAVVNALSRWLEVEVKQNGKIYRQRFEYAYDKELKKDMPGTPVTPLEVVGESKE-TGTK 181

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           +TF PD ++F   + F    + +  Q  A+ +  ++     +++            +Y  
Sbjct: 182 VTFLPDREVFST-SDFKFDIIDERLQELAFQNKGIRLELIDNRKEESVSKE-----YYSE 235

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCE-ENPEITSYCNTILT 324
            GL  ++    E+++ +       + EK+    +   E  + + +     I SY N I T
Sbjct: 236 RGLLDFIDYLNESKTPLHPTPVLFEGEKEVNNIQMYGEICLQFTDSTTENIVSYVNNIPT 295

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            E GTHE+G +  +TR  K++A+      ++      DDL      I+ + I  P F GQ
Sbjct: 296 TEAGTHETGFKTGMTRAFKEWAKKLNLIKEKDKEFEGDDLREGMTAIVRIKITNPVFEGQ 355

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TKTKL + +A   + +     F H++  N   AT ++   ++ +  R + +K  +  RK 
Sbjct: 356 TKTKLGNNEAYTMMNDLAYTKFGHWIEDNKEVATMIINNALDAAARREKIKKINDAERKK 415

Query: 443 AIRKL-RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    L GK+A C+       E  +VEGDSAGGSAKQAR+R  Q ++P +GKI+N   
Sbjct: 416 IGKGTAPLAGKVAVCTLKNKEANEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEK 475

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
              E +  ++++     A+G      Y EEDL+Y+K+IIM+DADVDG HI +L +T+ Y+
Sbjct: 476 QKLENVIASEELKIFNTAIGTGILDNYNEEDLKYDKIIIMSDADVDGYHIRTLWMTYIYR 535

Query: 562 EMYDLIEQKHLFLISPPLFRITQ----GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
            M  LI   HL+L  PPL+++ +      K +YA+ ++  +++ ++  K       I RF
Sbjct: 536 YMRPLIANGHLYLAQPPLYKVAKSGKGKDKILYAYSDDELEEVKKKVGKGA----TIQRF 591

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           KGLGEM   QL ET ++   RTL++V I          +  ++ LMG     R  ++ + 
Sbjct: 592 KGLGEMNPDQLWETTLNPETRTLVQVTIED----AAKAEKMVSLLMGDVVQPRKNYMYKY 647

Query: 678 ASF 680
           A F
Sbjct: 648 AEF 650


>gi|15600160|ref|NP_253654.1| DNA topoisomerase IV subunit B [Pseudomonas aeruginosa PAO1]
 gi|254244145|ref|ZP_04937467.1| topoisomerase IV subunit B [Pseudomonas aeruginosa 2192]
 gi|81783542|sp|Q9HUJ8|PARE_PSEAE RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|9951249|gb|AAG08352.1|AE004909_8 topoisomerase IV subunit B [Pseudomonas aeruginosa PAO1]
 gi|126197523|gb|EAZ61586.1| topoisomerase IV subunit B [Pseudomonas aeruginosa 2192]
          Length = 629

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 244/647 (37%), Positives = 356/647 (55%), Gaps = 26/647 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+A +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V L 
Sbjct: 3   TYNADAIEVLSGLDPVRKRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHAKSVQVILH 59

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  L V+D+GRG+PV+ HP+      +E+ILT LHAGGKF N  Y+ SGGLHGVGISVV
Sbjct: 60  QDNSLEVIDDGRGMPVDIHPE-EGVPGVELILTKLHAGGKFSNKNYQFSGGLHGVGISVV 118

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221
           NALS  + V V R    +   F+ G   S LE    V +   GT + F PDPK F     
Sbjct: 119 NALSTRVEVRVKRDANEYRMTFADGFKDSDLEVIGTVGKRNTGTSVHFWPDPKYFDSA-K 177

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F  +RL  + ++KA L   +   +             E+ E++F  GL++YL   +    
Sbjct: 178 FSVSRLKHVLKAKAVLCPGLSVVFEDK-------NTGERVEWHFEDGLRSYLTDAVAELP 230

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALT 339
            +  E F G  E     +  V WA+ W  E  E    SY N I T +GGTH +GLR  L 
Sbjct: 231 RLPDEPFCGNLEG---SKEAVSWALLWLPEGGESVQESYVNLIPTAQGGTHVNGLRQGLL 287

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R + +  +D+      +LS+ ++EP+F+GQTK +L S +A   V  
Sbjct: 288 DAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSG 347

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L ++     +L E  I  +  RL+    ++V RK   +   LPGKLADC+ 
Sbjct: 348 VVKDAFSLWLNEHAEIGLQLAELAISNAGRRLK--AGKKVERKKITQGPALPGKLADCAG 405

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 ELF+VEGDSAGGSAKQAR++  QA++PLRGKILN       ++  +Q++ D+  
Sbjct: 406 QEPMRAELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNTWEVDGGEVLASQEVHDIAV 465

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+G    +      LRY K+ I+ DAD DG HIA+LL   F +    L+E  H+++  PP
Sbjct: 466 AIGVDPGASDL-AQLRYGKICILADADSDGLHIATLLCALFVRHFRPLVEAGHVYVAMPP 524

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANK 637
           L+RI  G    YA DE  +  ILE      K GK +++RFKGLGEM   QL+ET MD N 
Sbjct: 525 LYRIDLGKDIYYALDEAERDGILERLAAEKKRGKPQVTRFKGLGEMNPLQLRETTMDPNT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           R L+++ +     +L+        L   +A +R  +++ + +  + +
Sbjct: 585 RRLVQLTLEDATGTLEIMDML---LAKKRAGDRKSWLESKGNLAEVL 628


>gi|322513687|ref|ZP_08066782.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Actinobacillus ureae ATCC
           25976]
 gi|322120495|gb|EFX92402.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Actinobacillus ureae ATCC
           25976]
          Length = 637

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 247/650 (38%), Positives = 366/650 (56%), Gaps = 28/650 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y A  I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE ++GYA+ I+V L
Sbjct: 4   KRYGADEITVLKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALSGYASQIDVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V+DNGRG+PV+ H      S +E+ILT LHAGGKF N  Y  SGGLHGVGISV
Sbjct: 61  HADNSLEVIDNGRGMPVDIHS-TEKISGVELILTKLHAGGKFSNKNYTFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + + + R   I++  F  G  +  L       + + GT + F P+PK F    
Sbjct: 120 VNALSQRVEIKIKRNGEIYTIAFENGAKVEELTVIGSCPKKQTGTTVRFYPNPKYFDSPR 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L  ++   +         +     E +Y+  GL  YL   L+  
Sbjct: 180 -FSVSRLRHLLRAKAVLCPKLTINFVD-------HINNNSESWYYEDGLSDYLSEALKEF 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             + +  F G    +      V WA+ W  E  E    SY N I T + GTH +GLR  L
Sbjct: 232 ECLPNPPFIGDVSSETE---AVSWALTWLPEGGELLAESYVNLIPTAQCGTHVNGLRNGL 288

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
            + + ++ E+     +++ + +DD+      +LS+ I+EP+FAGQTK +L S  A   V+
Sbjct: 289 LKAMVEFCEIHNLLPKSVKLTADDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVD 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
           + ++D F  +L QN      + E  I  ++ RLR    ++V RK  +    LPGKLADC+
Sbjct: 349 STIKDAFSLWLNQNMQTGKLIAEMAISSAQSRLR--AAKKVVRKKLVSGPALPGKLADCT 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN     S+++  +Q++ D+ 
Sbjct: 407 SQDLSRTELFLVEGDSAGGSAKQARDKDYQAILPLRGKILNTWEVSSDQVLASQEVHDIA 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    +    ++LRY KV I+ DAD DG HIA+LL   F +   +L++  H+++  P
Sbjct: 467 VAMGIDPDNDNL-DELRYGKVCILADADSDGLHIATLLCALFLRHFPNLVKNGHVYVAMP 525

Query: 578 PLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PL+RI  G  +  YA DE  K+ IL    K  KGK  + RFKGLGEM  SQL+ET MD +
Sbjct: 526 PLYRIDIGKDEVHYALDEVEKEAILARLAKK-KGKPNVQRFKGLGEMNPSQLRETTMDPS 584

Query: 637 KRTLLRVEINKDLNSLKDTQDSINK----LMGTKADERFKFIQERASFID 682
            R L+++ +++   + ++  ++       L   +A++R +++Q R    D
Sbjct: 585 TRRLVQLTLDELDTTEENEPNTFEIMDMLLAKKRAEDRKQWLQNRGDEAD 634


>gi|118602571|ref|YP_903786.1| DNA topoisomerase IV subunit B [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567510|gb|ABL02315.1| DNA topoisomerase IV subunit B [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 627

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 250/644 (38%), Positives = 365/644 (56%), Gaps = 22/644 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NYD+SSI IL GLE VR RPGMY   T+ +  +HL  EVIDN++DE IAGYA+ I V L
Sbjct: 2   SNYDSSSIEILTGLEAVRKRPGMY---TETERPNHLAQEVIDNSVDETIAGYASKISVIL 58

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G L+V DNGRG+PV+ HPK   KS +E+ILT LHAGGKF N +Y+ SGGLHGVGISV
Sbjct: 59  YKDGSLSVEDNGRGMPVDIHPK-EGKSGVEVILTKLHAGGKFSNDSYQFSGGLHGVGISV 117

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + + + R        FS G   + LE   KV +   GT + F+PD + F D  
Sbjct: 118 VNALSTLVEIWIKRDAKEHYITFSNGFKQTELEITRKVGKRNTGTTVKFKPDAQ-FFDTI 176

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F   +L    +SKA L   ++  +  + + A        +++ +  GLK YL   L+  
Sbjct: 177 KFSVTKLRHNLRSKAVLCPGLEVNFYNEIDEA-------TDKWIYKEGLKDYLSISLDVL 229

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
             +          K    +     A      N    SY N I T  GGTH +GLR  L  
Sbjct: 230 DCL-PPTPFIIDYKTDEQQLNCSLAWTQYNTNVVAESYVNLIPTIGGGTHVNGLRSGLNE 288

Query: 341 GIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
            +K++ E      + I +  DD+       LS+ I +P+F+GQTK +L S ++   V N 
Sbjct: 289 ALKEFCEFRNLIPKNIKLTPDDIWQKIAYTLSIKILDPQFSGQTKERLSSRESASFVANV 348

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
           ++D F  +L Q+   A ++ +  I  ++ RL+    ++V RK  I    LPGKL+DC+  
Sbjct: 349 VKDAFSLWLNQHTSIAEQIAQLAIANAQARLKTN--KKVIRKKIISGPALPGKLSDCTST 406

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
             + TE+F+VEGDSAGGSAKQAR++  QA+LPLRGKILN     SE++  + +I D+  A
Sbjct: 407 DLNQTEVFLVEGDSAGGSAKQARDKEYQAILPLRGKILNTWEVDSEQVLASNEIHDIAIA 466

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           +G    S+     LRY K+ I+ DAD DGAHIA+L+ T F +    LI++ H+F+  PPL
Sbjct: 467 IGLEPNSEDL-SGLRYGKICILADADSDGAHIATLICTLFVKHFQKLIQKGHIFVAMPPL 525

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKR 638
           +R+  G    YA D+  +  I+++ +   K  KI++ RFKGLGEM   QL+ET M  + R
Sbjct: 526 YRVDAGKYVHYALDDNERDAIIKKIENKNKHVKIQVQRFKGLGEMNPYQLRETTMLPDTR 585

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            L+++ ++  L   +     ++K    +A +R K+++E+ +  +
Sbjct: 586 HLIQLTLDDPLQVFQTMDMLLSK---KRAADRKKWLEEKGNLAN 626


>gi|85058249|ref|YP_453951.1| DNA topoisomerase IV subunit B [Sodalis glossinidius str.
           'morsitans']
 gi|84778769|dbj|BAE73546.1| topoisomerase IV subunit B [Sodalis glossinidius str. 'morsitans']
          Length = 631

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 252/646 (39%), Positives = 361/646 (55%), Gaps = 26/646 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  I+V L
Sbjct: 4   SSYNADAIEVLSGLEPVRRRPGMY---TDTLRPNHLGQEVIDNSVDEALAGHARRIDVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGISV
Sbjct: 61  HPDQSLEVTDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + VTV R   ++   F  G  +  L       +   GT + F PD + F D  
Sbjct: 120 VNALSTRVEVTVRRNGNVYRIAFENGDKVEDLSVVGTCPKRNTGTSVHFWPD-EHFFDSP 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L   V+  +       E       + + +  GL  YL   +   
Sbjct: 179 RFSVSRLTHLLKAKAVLCPGVEIVFQDRVNNTE-------QRWCYEAGLTDYLNEAINGL 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +    F G          TV+W + W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 ITLPETPFVGAVSGDTE---TVDWVLLWLPEGGELLTESYVNLIPTPQGGTHVNGLRQGL 288

Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E      R + + +DD+      +LSV +++P+FAGQTK +L S  +   V 
Sbjct: 289 LDAMREFCEYRNILPRGVKLSADDIWERCTYVLSVKMQDPQFAGQTKERLSSRQSAAFVS 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             ++D F  +L QN   A +L E  I  ++ RLR    ++V RK       LPGKLADC+
Sbjct: 349 GVVKDAFILWLNQNIQVAEQLAELAIASAQRRLR--AAKKVVRKKLTSGPALPGKLADCT 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+ 
Sbjct: 407 AQDLVRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG    S      LRY K+ I+ DAD DG HIA+LL   F Q    L+E+ H+++  P
Sbjct: 467 VALGIDPDSNDL-SQLRYGKICILADADSDGLHIATLLCALFMQHFRKLVEEGHVYVAMP 525

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G +  YA DEE K  +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N 
Sbjct: 526 PLYRIDLGKEVYYALDEEEKTGVLEQLKRK-KGKPNVQRFKGLGEMNPLQLRETTLDPNT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++ +    + ++ T   ++ L+  K +++R  ++QE+    +
Sbjct: 585 RRLVQLTV--GADDVQQTLAMMDMLLAKKRSEDRRNWLQEKGDEAE 628


>gi|72162533|ref|YP_290190.1| DNA topoisomerase IV subunit B [Thermobifida fusca YX]
 gi|71916265|gb|AAZ56167.1| DNA topoisomerase (ATP-hydrolyzing) [Thermobifida fusca YX]
          Length = 702

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 239/692 (34%), Positives = 335/692 (48%), Gaps = 59/692 (8%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + Y A  + +LEGLE VR RPGMYIG TD + L H   E+IDN++DE +AGY   IEV L
Sbjct: 13  EEYSARHLSVLEGLEAVRKRPGMYIGSTDSRGLTHCMWEIIDNSVDEALAGYCTRIEVVL 72

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G + V DNGRGIPV+  P     S +E+++T LHAGGKF + +Y  SGGLHGVG SV
Sbjct: 73  HADGSVEVRDNGRGIPVDIEP-SSGLSGVELVMTKLHAGGKFGSGSYTASGGLHGVGASV 131

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIP---------------LSPLEKKEKVRNKRGTR 206
           VNALS  L V V R    ++  F RGIP                   + ++      GTR
Sbjct: 132 VNALSARLDVEVDRGGHTYAMSFRRGIPGVFDMDGPDAGFTPRSGLEKIRKIPAKVTGTR 191

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F  D +IF   A      L++  +  A+L   +      ++   E+      EEF F 
Sbjct: 192 VRFWADRQIFLKDAEISREALVERARQTAFLVPGLSIAIRDERTEGEEPYE---EEFRFD 248

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTVEWAIAWCE 310
           GG+  +      + ++       G                        R  V+ A+ W  
Sbjct: 249 GGIGEFCDYLAPDTAVSPLLRIEGSGTFTETVPVLDDQGHMVPTDVERRLDVDIALRWGT 308

Query: 311 ENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAV 367
                + S+ N I T +GGTH SG   AL R I      T+  +A       +D++    
Sbjct: 309 GYDTVVRSFVNVIATPKGGTHVSGFERALVRVINDQLRATKLLKANDEPVTKEDVLEGLT 368

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL----LEWVI 423
            +++V + EP+F GQTK  L +  A R V   +      +L        +     LE ++
Sbjct: 369 AVVTVRLPEPQFEGQTKEVLGTSAASRIVSQIVSQHMRAFLTSTKRAEKQQARTVLEKIV 428

Query: 424 ERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
             ++ RL  R+QRE   RK A+    LP KL DC       +ELFIVEGDSA G+AK AR
Sbjct: 429 NAAKARLAARQQRETQRRKNALENSALPAKLVDCRSEGLERSELFIVEGDSALGTAKLAR 488

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           +   QA+LP+RGKILNV  A    +  N +   ++Q +G  +   +  +  RY +VI+M 
Sbjct: 489 DSEFQALLPIRGKILNVQKASVADMLKNAECAAIIQVIGAGSGRTFDLDAARYGRVILMA 548

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-------TQG----TKSVYA 591
           DADVDGAHI  LLLT FY+ M  ++E   +F   PPL RI        +G     + +Y 
Sbjct: 549 DADVDGAHIRCLLLTLFYRYMRPMLEAGRVFAAVPPLHRIELTNVRRKRGARPEDRYIYT 608

Query: 592 HDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
           + +    + L E    G   K  + R+KGLGEM A QL ET MD   RTL R+ +     
Sbjct: 609 YSDAELHQKLAELAAKGITWKEPVQRYKGLGEMDADQLAETTMDPRYRTLRRIRL----K 664

Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFID 682
              + +     LMG +   R  FI + A  +D
Sbjct: 665 DAAEAEAMFELLMGNEVAPRRAFIAQGARELD 696


>gi|284031369|ref|YP_003381300.1| DNA topoisomerase [Kribbella flavida DSM 17836]
 gi|283810662|gb|ADB32501.1| DNA topoisomerase (ATP-hydrolyzing) [Kribbella flavida DSM 17836]
          Length = 694

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 237/698 (33%), Positives = 341/698 (48%), Gaps = 55/698 (7%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
            +P   +      Y+A ++ +LEGLE VR RPGMYIG TD + L H   E+IDNA+DE +
Sbjct: 2   AAPTPRSTELDPTYNARNLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNAVDEAL 61

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AG+ + I+V L  +G + V D  RGIPV+  PK    S +E++ T LHAGGKF   +Y  
Sbjct: 62  AGHGDRIDVVLHKDGSVEVRDKARGIPVDIEPK-TKLSGVEVVFTKLHAGGKFGGGSYNA 120

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI--------------PLSPLEKK 196
           SGGLHGVG SVVNALS  L V V R   +++  F RG+              P   L K 
Sbjct: 121 SGGLHGVGASVVNALSARLDVEVDRGGVVWTTSFRRGVAGEFDGEGATAGFTPAKGLRKA 180

Query: 197 EKVRN-KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
            + +    GTRI +  D +IF   A F+   L+   +  ++L   ++     ++      
Sbjct: 181 GRAKKGVTGTRIRYWADRQIFTRDAAFNYDELVTRARQTSFLVPGLELVIRDER-----G 235

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHR 299
             P +E F   GG+  + +    ++ +      TG                         
Sbjct: 236 HEPTEESFKHDGGISEFCEFLATDQKVTDVIRLTGTGHFTETVPMLDDAGHMTPTDVERD 295

Query: 300 GTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKK-YAELTQNKRAISI 357
             V+ A+ W +       S+ N + T +GGTH +G   AL++            K    +
Sbjct: 296 LDVDIAVRWGDGYETEVRSFVNIVATPKGGTHVAGFERALSKAFTGVLTGTRLLKSGEEV 355

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
           I DD++     +++V + EP+F GQTK  L +  A R V   ++   + +L      A  
Sbjct: 356 IKDDVLEGLTSVVTVRLAEPQFDGQTKEVLGTPAASRIVAKVVQTELEKFLTSAKGAAKA 415

Query: 418 L----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
                LE V+  S  R+  R+ RE   RKTA+    LP KLADC  N    +ELFIVEGD
Sbjct: 416 QARAVLEKVVAASRTRVAARQHRELQRRKTALESSALPAKLADCRSNDVDRSELFIVEGD 475

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           SA G+AK ARN   QA+LP+RGKILNV  A    +  N +   ++Q +G  +   +  E 
Sbjct: 476 SALGTAKLARNSEFQALLPIRGKILNVQKASVGDMLKNAECASIIQVVGAGSGRTFDLEQ 535

Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-----TQGT- 586
            RY K+I M DAD DGAHI  LL T F++ M  L++   ++   PPL R       +G  
Sbjct: 536 ARYGKIIFMADADSDGAHIRCLLATLFFRYMRPLVDAGRVYTAVPPLHRFELTNPKKGQD 595

Query: 587 KSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645
           K +Y + +   Q+   E  K G + K    R+KGLGEM A QL ET MD   RTL R+ +
Sbjct: 596 KYIYTYSDAEYQRKSAELMKKGVRWKEPPQRYKGLGEMDADQLAETTMDPRHRTLRRITV 655

Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
           +      +      + LMG     R +FI + A  +D+
Sbjct: 656 DDG----EAAASVFDLLMGNDVAPRKEFIVQGAYELDE 689


>gi|294631850|ref|ZP_06710410.1| DNA gyrase, B subunit [Streptomyces sp. e14]
 gi|292835183|gb|EFF93532.1| DNA gyrase, B subunit [Streptomyces sp. e14]
          Length = 707

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 242/707 (34%), Positives = 355/707 (50%), Gaps = 55/707 (7%)

Query: 24  KKSGEIPDSP--AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEV 81
                +P +   A A++  S+ Y A  + +LEGLE VR RPGMYIG TD + L H   E+
Sbjct: 2   TADTSVPSTALLAGADRDGSN-YTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEI 60

Query: 82  IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141
           IDN++DE +AG  + IEV L  +G + V DNGRGIPV+  P+    S +E+++T LHAGG
Sbjct: 61  IDNSVDEALAGVCDHIEVVLHDDGSVEVRDNGRGIPVDVEPR-TGLSGVEVVMTKLHAGG 119

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------ 189
           KF   +Y  SGGLHGVG SVVNALS  L V V R     +  F RG+P            
Sbjct: 120 KFGGGSYAASGGLHGVGASVVNALSARLDVEVDRGGHTHAISFRRGVPGAFTGSGPEAKF 179

Query: 190 ---LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
                  + K+  +++ GTR+ +  D +IF   A      L +  +  A+L   +     
Sbjct: 180 EATSGLRKVKKIPKSRTGTRVRYWADRQIFLKDAKLSLETLHQRARQTAFLVPGLTIVVR 239

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE------------- 293
            +  + E     E E F F GG+  + +    +R +      +G+               
Sbjct: 240 DEFGLGEGGSKGE-ESFRFDGGISEFCEYLANDRPVCDVLRLSGQGTFKETVPVLDEHGQ 298

Query: 294 ---KKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
               + T    V+ A+ W         S+ N I T +GGTH +G   A+T+ + +     
Sbjct: 299 MTPTEVTRELGVDVALRWGTGYDTTLRSFVNIIATPKGGTHVAGFEQAVTKTMNEVLRAK 358

Query: 350 QNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
           +  R        DD +     +++V + EP+F GQTK  L +  A+R V N +      +
Sbjct: 359 KLLRVAEDDIVKDDALEGLTAVVTVRLAEPQFEGQTKEVLGTAAARRIVNNVISKELKAF 418

Query: 408 LVQNPIEATKLLEWVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAH 462
           L     +A +    V+E+           R+ +    RKTA+    LP KLADC  +   
Sbjct: 419 LTSTKRDAAQQARVVMEKAVAAARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDDVD 478

Query: 463 GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
            +ELFIVEGDSA G+AK ARN   QA+LP+RGKILNV  +    +  N +   ++Q +G 
Sbjct: 479 RSELFIVEGDSALGTAKLARNSEFQALLPIRGKILNVQKSSVTDMLKNAECGAIIQVIGA 538

Query: 523 RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI 582
            +   +  +  RY K+I+MTDADVDG+HI +LLLT F++ M  ++E   +F   PPL RI
Sbjct: 539 GSGRTFDLDAARYGKIIMMTDADVDGSHIRTLLLTLFHRYMRPMVESGRVFAAVPPLHRI 598

Query: 583 -----TQGT-KSVYAHDEEH-KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
                 +G  K VY + +   + K+LE   K+ + K  I R+KGLGEM A QL ET MD 
Sbjct: 599 ELVQPKKGQDKYVYTYSDRELRDKLLEFQSKNIRYKDSIQRYKGLGEMDADQLAETTMDP 658

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
             RTL R+ ++     L+  +   + LMG     R +FI   A+ +D
Sbjct: 659 RHRTLRRINLSD----LEAAEQVFDLLMGNDVAPRKEFIASSAATLD 701


>gi|145344184|ref|XP_001416617.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576843|gb|ABO94910.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 662

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 254/654 (38%), Positives = 364/654 (55%), Gaps = 22/654 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S +YDA SI++L+GLEPVR RPGMYIG T  K LHHL  EV+DN++DEV AG+A+ + V 
Sbjct: 21  SGDYDAGSIQVLQGLEPVRKRPGMYIGSTSTKGLHHLVWEVLDNSVDEVQAGHASHVRVV 80

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST--YEISGGLHGVG 158
           ++ NGF++VVD+GRGIP + HP    KS+LE +LT LHAGGKF   +  Y +SGGLHGVG
Sbjct: 81  VEENGFVSVVDDGRGIPTDVHP-VTGKSSLETVLTILHAGGKFGGDSSGYHVSGGLHGVG 139

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL--EKKEKVRNKRGTRITFRPDPKIF 216
           ISVVNALS+ + VTV R    + Q FSRGI L P+  +K++    K+GT I F+PD +IF
Sbjct: 140 ISVVNALSELVEVTVWRNGNEYIQSFSRGIALGPMQEKKQDGSGQKKGTMIRFKPDDQIF 199

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                FD   +    +  A+L+   +      +   +K    E E+  F  GLK Y+   
Sbjct: 200 DK-VKFDPTIIRTRMKELAFLNSGTELHL---RTFDKKTKEYEDEKLLFAEGLKDYVLDL 255

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRV 336
             + + +     T      G  R            +  +  Y N+I T +GGTH  GL+ 
Sbjct: 256 TSDATRLHEP-ITFSGTMDGV-RVEGALCWTADSYSDTLLGYANSIRTTDGGTHLDGLKY 313

Query: 337 ALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           +LT+ +   +   +  +    ++  D +     G+++V++ EPEF GQTKT+L + + +R
Sbjct: 314 SLTKTLNVVSRKAKLLKDSDPNLGGDHIREGLSGVIAVWVPEPEFEGQTKTRLGNSEVRR 373

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIER-SEERLRRRKQREVNRKTAIRKLRLPGKL 453
            VEN   D    ++  NP     +              +R +  V RKT +   RLPGKL
Sbjct: 374 IVENIANDAVAGHMEFNPSVLKSIFAKAQSAFKAAEAAKRAREMVRRKTVLTSNRLPGKL 433

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA-SAGSEKIRNNQQ 512
           +DCS + A  TE+F+VEGDSAGGS KQ R+R  QAVLPLRGKI+NV     +  +  N +
Sbjct: 434 SDCSSSDADQTEIFLVEGDSAGGSCKQGRDRGFQAVLPLRGKIMNVERKLDAAALYKNTE 493

Query: 513 IMDLVQALGC-RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           I +++ ALG            LRY K+II+TDADVDGAHI +LLLTF Y+   DL E+ +
Sbjct: 494 ITNMISALGLGGMGEDLDTTALRYSKIIILTDADVDGAHIRTLLLTFLYRYQRDLFEKGY 553

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           ++   PPL+++  G K  Y +DE+  Q++L    + G     I RFKGLGEM+  QL  T
Sbjct: 554 VYAAVPPLYKVVVGKKETYCYDEDDLQEVLVSLPEGGAK--HIQRFKGLGEMMPEQLWST 611

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            ++   R L R+ ++             + LM    + R K I +  S +  + 
Sbjct: 612 TLNPKTRVLKRLTVDD----ASAANHMFSTLMSKDVEPRRKLITDEGSTLASID 661


>gi|309811435|ref|ZP_07705222.1| DNA gyrase, B subunit [Dermacoccus sp. Ellin185]
 gi|308434742|gb|EFP58587.1| DNA gyrase, B subunit [Dermacoccus sp. Ellin185]
          Length = 713

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 246/721 (34%), Positives = 370/721 (51%), Gaps = 45/721 (6%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           M D   D   ++ P +Q  S      G                YDA +I++LEGLE VR 
Sbjct: 1   MADKPSD--DSIDPTTQDPSLADAADGASEQVEQHVRSQIDTEYDADAIQVLEGLEAVRK 58

Query: 61  RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           RPGMYIG T E+ LHHL  E++DN++DE +AG+A  ++V++  +  + V DNGRGIP   
Sbjct: 59  RPGMYIGSTGERGLHHLVWEIVDNSVDEALAGHATRVDVTILPDNGIRVSDNGRGIPTGR 118

Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
           + +  + ST+E++LT LHAGGKF    Y++SGGLHGVG SVVNALS  L   V ++  ++
Sbjct: 119 N-EAYDMSTVELVLTQLHAGGKFGGGGYKVSGGLHGVGSSVVNALSTRLEAEVRQKGHVY 177

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
             +F+ G+PL  L ++ +  ++ GT ITF   P+IF     +D   +    Q  A+L+  
Sbjct: 178 RMEFAGGVPLGELREE-EESDETGTTITFWASPEIFETTV-YDFETIRARFQQMAFLNKG 235

Query: 241 VKTCWSCDK---------------------------EIAEKYGIPEKEEFYFPGGLKTYL 273
           +    + ++                           E A +        + +  GL  Y+
Sbjct: 236 LTISLTDERPDAVDEGAAEEAAADAAAEGADAAQADEAAARAKKGRSVTYCYADGLLDYV 295

Query: 274 QTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           +    ++            E +      +VE A+ W       + +Y NTI T EGGTHE
Sbjct: 296 KHLNSSKRAEVVNEDIIAFEHEDAERYLSVEVAMQWTTAYSESVHTYANTINTHEGGTHE 355

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G R A+T+ +  +A   +   ++  ++  DD+      ++SV + EP+F GQTKTKL +
Sbjct: 356 EGFRAAMTKLVNDFARREKLLKEKDDNLTGDDIREGLTAVISVKLAEPQFEGQTKTKLGN 415

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLR 448
            + +  V+ A+RD FDH+L  +P E   ++   I  +  R+  RK RE  R+  +     
Sbjct: 416 SEVKGFVQTAVRDEFDHWLQMHPREGKAIVSKAIAAASARMAARKARETARRKGLLESGG 475

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKL DC       +E+FIVEGDSAGGSA Q RN  NQA+LP+RGKILNV  A  +K+ 
Sbjct: 476 LPGKLRDCQSKDPSISEVFIVEGDSAGGSAVQGRNPFNQAILPIRGKILNVEKARLDKVL 535

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            N ++  L+   G      +  E  RY K+++M DADVDG HI +LLLT  ++ M  LIE
Sbjct: 536 ANNEVQGLISGFGTGIGEDFTIEKARYHKIVLMADADVDGMHIRTLLLTLLFRFMRPLIE 595

Query: 569 QKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEML 624
             +++L  PPL+RI        +A  +  +  +++  +  G    +   + R+KGLGEM 
Sbjct: 596 AGYVYLAQPPLYRIKWSNHEHEFAFTDRERDAMIDAGQSKGWRLPKENGVQRYKGLGEMN 655

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
             +L ET MD   RTLL+V +           +    LMG   + R  FIQ  A  +  +
Sbjct: 656 YQELWETTMDPESRTLLQVTLED----AAAADEIFAVLMGEDVESRRSFIQRNAKDVRFL 711

Query: 685 G 685
            
Sbjct: 712 D 712


>gi|152986866|ref|YP_001351015.1| DNA topoisomerase IV subunit B [Pseudomonas aeruginosa PA7]
 gi|150962024|gb|ABR84049.1| DNA topoisomerase IV, B subunit [Pseudomonas aeruginosa PA7]
          Length = 629

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 244/647 (37%), Positives = 356/647 (55%), Gaps = 26/647 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+A +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V L 
Sbjct: 3   TYNADAIEVLSGLDPVRKRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHAKSVQVILH 59

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  L V+D+GRG+PV+ HP+      +E+ILT LHAGGKF N  Y+ SGGLHGVGISVV
Sbjct: 60  QDNSLEVIDDGRGMPVDIHPE-EGVPGVELILTKLHAGGKFSNKNYQFSGGLHGVGISVV 118

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221
           NALS  + V V R    +   F+ G   + LE    V R   GT + F PDPK F     
Sbjct: 119 NALSTRVEVRVKRDANEYRMTFADGFKDTDLEVIGTVGRRNTGTSVHFWPDPKYFDSA-K 177

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F  +RL  + ++KA L   +   +             E+ E++F  GL++YL   +    
Sbjct: 178 FSVSRLKHVLKAKAVLCPGLSVVFEDK-------NTGERVEWHFEDGLRSYLTDAVAELP 230

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALT 339
            +  E F G  E     +  V WA+ W  E  E    SY N I T +GGTH +GLR  L 
Sbjct: 231 RLPDEPFCGNLEG---SKEAVSWALLWLPEGGESVQESYVNLIPTAQGGTHVNGLRQGLL 287

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R + +  +D+      +LS+ ++EP+F+GQTK +L S +A   V  
Sbjct: 288 DAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSG 347

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L ++     +L E  I  +  RL+    ++V RK   +   LPGKLADC+ 
Sbjct: 348 VVKDAFSLWLNEHAEIGLQLAELAISNAGRRLK--AGKKVERKKITQGPALPGKLADCAG 405

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 ELF+VEGDSAGGSAKQAR++  QA++PLRGKILN       ++  +Q++ D+  
Sbjct: 406 QEPMRAELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNTWEVDGGEVLASQEVHDIAV 465

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+G    +      LRY K+ I+ DAD DG HIA+LL   F +    L+E  H+++  PP
Sbjct: 466 AIGVDPGASDL-AQLRYGKICILADADSDGLHIATLLCALFVRHFRPLVEAGHVYVAMPP 524

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANK 637
           L+RI  G    YA DE  +  ILE      K GK +++RFKGLGEM   QL+ET MD N 
Sbjct: 525 LYRIDLGKDIYYALDEAERDGILERLAAEKKRGKPQVTRFKGLGEMNPLQLRETTMDPNT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           R L+++ +     +L+        L   +A +R  +++ + +  + +
Sbjct: 585 RRLVQLTLEDATGTLEIMDML---LAKKRAGDRKSWLESKGNLAEVL 628


>gi|54296715|ref|YP_123084.1| DNA topoisomerase IV subunit B [Legionella pneumophila str. Paris]
 gi|148360657|ref|YP_001251864.1| DNA topoisomerase IV subunit B [Legionella pneumophila str. Corby]
 gi|53750500|emb|CAH11894.1| Topoisomerase IV subunit B [Legionella pneumophila str. Paris]
 gi|148282430|gb|ABQ56518.1| DNA topoisomerase IV subunit B [Legionella pneumophila str. Corby]
          Length = 626

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 247/644 (38%), Positives = 356/644 (55%), Gaps = 22/644 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S+NY A +I +L GLEPV+ RPGMY   TD    +HL  EVIDN++DEV+AG+A+ I V+
Sbjct: 2   SENYTAEAIEVLSGLEPVQRRPGMY---TDTTRPNHLAQEVIDNSVDEVLAGFASRIIVT 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +G + V D+GRG+PV+ HP+    S +E+I+T LHAGGKF +  Y  SGGLHGVG+S
Sbjct: 59  LHEDGSIEVEDDGRGMPVDLHPQL-GLSGVEVIMTRLHAGGKFSDKNYSFSGGLHGVGVS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPDPKIFGDK 219
           VVNALS+ L VT+ R   I+   F+ G  L  L +    + +  GT I F P+ K F   
Sbjct: 118 VVNALSERLDVTIKRNGIIYQMTFANGDKLCELNETGVTKKRETGTVIRFWPNGKYFDTT 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
                  L  + ++KA L   +   +       E         + +  GL  YLQ  L  
Sbjct: 178 -KISVKHLTHVLRAKAVLCSGLSMTFINKITNEE-------MNWCYEQGLTDYLQQTLP- 228

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
                 E       K          A +         SY N I T +GGTH +GLR  L 
Sbjct: 229 -EDYLPEEPFAGAFKSDEATVDWALAWSDSANGNLNESYVNLIPTIQGGTHVNGLRSGLF 287

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             + ++ EL     R + + +DDL  S   +LS+ ++EP+FAGQTK +L S      V N
Sbjct: 288 EAMSEFCELRNLLPRGVKLTADDLWESCQYVLSIKMKEPQFAGQTKERLSSRQTSGLVSN 347

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L Q+  +   +    IER+++RL+  + ++V RK   +   LPGKLADC Q
Sbjct: 348 VIKDAFAIWLNQHRNQGEAIAALAIERAQKRLK--QAKQVARKRVSQGPALPGKLADCLQ 405

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 ELF+VEGDSAGGSAKQARN+  QA+LPLRGKILN     S ++  +Q+I D+  
Sbjct: 406 TDLSQAELFLVEGDSAGGSAKQARNKDYQAILPLRGKILNSWEVDSSQVLASQEIHDISV 465

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+G    S    E LRY K+ I+ DAD DGAHIA+L+   F +    L++  H+F+  PP
Sbjct: 466 AIGVDPGSSDL-EGLRYGKICILADADSDGAHIATLICALFLRHFKPLVKAGHVFVAMPP 524

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+RI  G    YA D+E K +I++   +  K K+ + RFKGLGEM   QL+ET MD N R
Sbjct: 525 LYRIDAGKLIHYALDDEEKNRIIQHLSQTTKSKVNVQRFKGLGEMNPIQLRETTMDPNTR 584

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            L+++ ++ +  +       +NK    +A +R  +++ + +  +
Sbjct: 585 RLVQLTLDDEEQTEAIMDMMLNK---KRAADRKLWLETKGNLAE 625


>gi|330448753|ref|ZP_08312400.1| DNA topoisomerase IV, B subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492944|dbj|GAA06897.1| DNA topoisomerase IV, B subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 627

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 260/646 (40%), Positives = 366/646 (56%), Gaps = 28/646 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  +EV L
Sbjct: 4   QSYNAGAIEVLNGLEPVRRRPGMY---TDTARPNHLGQEVIDNSVDEALAGHARKVEVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L VVD+GRG+PV+ HP+    S +E+IL  LHAGGKF    Y+ SGGLHGVGISV
Sbjct: 61  HADQSLEVVDDGRGMPVDIHPE-EGVSGVELILCKLHAGGKFSGKNYQFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + VTV R   ++   F  G  +S LE      R  +GTR+ F PD K F    
Sbjct: 120 VNALSKRVEVTVKRDGQVYQIAFENGDKVSELEVIGTCGRRAKGTRVHFWPDAKYFDSA- 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL    ++KA L   ++  ++            E   + +  GLK YL   ++  
Sbjct: 179 KFSVSRLKSNLKAKAVLCPGLEIVFTNK-------ITDETIRWCYEDGLKDYLAEGVKGY 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
           +L+  E FTG            +WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 TLLPEEPFTGVFSA---QTEAADWALLWLPEGGELITESYVNLIPTAQGGTHVNGLRQGL 288

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E      R + + +DD+      +LSV I++P+FAGQTK +L S      V 
Sbjct: 289 LDAMREFCEFRNLLPRGVKLTADDIWDRCAYVLSVKIQDPQFAGQTKERLSSRQCAAFVS 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             ++D F  +L + P  A +L E  I  +  R+R    ++V RK       LPGKLADCS
Sbjct: 349 GVVKDAFSLWLNERPQLAEQLAEVCIANAHRRMR--ASKKVVRKKIASGPALPGKLADCS 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           Q   + TELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     ++++  +Q++ D+ 
Sbjct: 407 QQDLNRTELFLVEGDSAGGSAKQARDRMYQAIMPLRGKILNTWEVSADQVLASQEVHDIS 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG    S      LRY K+ ++ DAD DG HIA+LL   F +    L+   H+F+  P
Sbjct: 467 VALGIDPDSDDL-SGLRYGKICVLADADSDGLHIATLLCALFMKHFEALVRAGHVFIAMP 525

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G +  YA DE  K  IL+  K   +GK+ + RFKGLGEM   QL+ET MD N 
Sbjct: 526 PLYRIDLGKEVYYALDEAEKNGILDRLKGK-RGKVNVQRFKGLGEMNPLQLRETTMDPNT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++ I+ D     +T + ++ L+G K A++R  ++Q +    +
Sbjct: 585 RRLVQLTIDDD----SETNEMMDMLLGKKRAEDRRHWLQSKGDMAE 626


>gi|302557980|ref|ZP_07310322.1| DNA gyrase subunit B [Streptomyces griseoflavus Tu4000]
 gi|302475598|gb|EFL38691.1| DNA gyrase subunit B [Streptomyces griseoflavus Tu4000]
          Length = 707

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 239/706 (33%), Positives = 349/706 (49%), Gaps = 52/706 (7%)

Query: 23  LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82
             ++     +          NY A  + +LEGLE VR RPGMYIG TD + L H   E+I
Sbjct: 2   TAETSVPSTALLAGADRDGSNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEII 61

Query: 83  DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142
           DN++DE + GY + I+V L  +G + V DNGRGIPV+  PK    S +E+++T LHAGGK
Sbjct: 62  DNSVDEALGGYCDHIDVVLHDDGSVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHAGGK 120

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV--- 199
           F   +Y  SGGLHGVG SVVNALS  L V V R     +  F RG+P +      +    
Sbjct: 121 FGGGSYAASGGLHGVGASVVNALSARLDVEVDRGGHTHAISFRRGVPGAFAAVGPEAKFE 180

Query: 200 ------------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247
                       +++ GTR+ +  D +IF   A      L +  +  A+L   +      
Sbjct: 181 AGSGLRKARKIPKSRSGTRVRYWADRQIFLKDAKLALDTLHQRARQTAFLVPGLTIVVRD 240

Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-------------- 293
           +  + E     E E F F GG+  + +    +R +  +  FTG+                
Sbjct: 241 EYGLGEGGSKGE-ESFRFDGGISEFCEFLASDRPVCDTLRFTGQGIFKETVPVLDEHGQM 299

Query: 294 --KKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
              + T    V+ A+ W         S+ N I T +GGTH +G   A+ + + +     +
Sbjct: 300 TPTEVTRELGVDVAMRWGTGYDTTLRSFVNIIATPKGGTHVAGFEQAVAKTMNEVLRTKK 359

Query: 351 NKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
             R        DD +     +++V + EP+F GQTK  L +  A+R V N +      +L
Sbjct: 360 MLRVAEDDIVKDDALEGLTAVVTVRLAEPQFEGQTKEVLGTSAARRIVNNVISKELKAFL 419

Query: 409 VQNPIEATKLLEWVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHG 463
                +A +    V+E+           R+ +    RKTA+    LP KLADC  +    
Sbjct: 420 TSTKRDAAQQARVVMEKAVAAARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDDVDR 479

Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523
           +ELFIVEGDSA G+AK ARN   QA+LP+RGKILNV  +    +  N +   ++Q +G  
Sbjct: 480 SELFIVEGDSALGTAKLARNSEFQALLPIRGKILNVQKSSVTDMLKNAECGAIIQVIGAG 539

Query: 524 TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI- 582
           +   +  +  RY K+I+MTDADVDG+HI +LLLT F++ M  ++E   +F   PPL RI 
Sbjct: 540 SGRTFDIDTARYGKIIMMTDADVDGSHIRTLLLTLFHRYMRPMVEAGRVFAAVPPLHRIE 599

Query: 583 ----TQGT-KSVYAHDEEHKQKILEEFK-KHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
                +G  K VY + +   +  L EF+ K+ + K  I R+KGLGEM A QL ET MD  
Sbjct: 600 LVQPRKGQDKYVYTYSDRELRDTLMEFQSKNIRYKDSIQRYKGLGEMDADQLAETTMDPR 659

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            RTL R+ +      L+  +   + LMG     R +FI   A+ +D
Sbjct: 660 HRTLRRINLTD----LEAAEQVFDLLMGNDVAPRKEFISSSAATLD 701


>gi|296120379|ref|YP_003628157.1| DNA topoisomerase (ATP-hydrolyzing) [Planctomyces limnophilus DSM
           3776]
 gi|296012719|gb|ADG65958.1| DNA topoisomerase (ATP-hydrolyzing) [Planctomyces limnophilus DSM
           3776]
          Length = 635

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 264/646 (40%), Positives = 363/646 (56%), Gaps = 20/646 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y AS I ++EGLE VR RP MYIGG D + LHHL  E++DN++DE +AG A  I V+L  
Sbjct: 5   YTASDIEVIEGLEAVRRRPSMYIGGVDARGLHHLLWEIVDNSVDECLAGEATEITVTLHK 64

Query: 104 NG-FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
           +G   +V DNGRGIPV+ HPK   KS LE ILTTLH+GGKF  + Y  SGGLHGVG SVV
Sbjct: 65  DGESCSVSDNGRGIPVDLHPK-TKKSALETILTTLHSGGKFSKNAYARSGGLHGVGSSVV 123

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+E+  T+ R    + Q+F RG P + L++    R  RGT + FRPD +IF     F
Sbjct: 124 NALSEEMVATIHRDGFEWQQRFKRGKPTTALKQVRPFRG-RGTDVFFRPDKEIFARTV-F 181

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               +    +  +Y+   +K     +          E    + P GL+TYL   +     
Sbjct: 182 SIETIKAHLEDISYIHAGLKITLIDE-------AKKETVVLHHPDGLQTYLARLMTEGQR 234

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGI 342
                   +  K                 +  + SY N I T  GGTHESGL+ A+ + +
Sbjct: 235 KPVHENLFQFSKDDGSYKVEAVFRWSESTDEHLRSYVNGIRTHAGGTHESGLKSAIGKAV 294

Query: 343 KKYAELTQNK-RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
           + Y E+   K + ++I +DD+    VG+LSVF+ EP F GQTK KL + +    VE  +R
Sbjct: 295 RNYMEVHDIKVKGLTIQNDDIREGIVGLLSVFLAEPMFQGQTKEKLNNPEMSSVVEGQIR 354

Query: 402 DPFDHYLVQNPIEATKLLEWVI--ERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
              +++L  N   A  ++  ++   R+    R        +  A R+L LPGKL DC   
Sbjct: 355 PALENWLSSNKTTADAIVGRIVLAARARAASREAASEVRRKSPAARRLSLPGKLLDCRST 414

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
            A  +ELFIVEG SAGG+A   R+   QAVLPLRGK+LN  +  + KI +NQ+I DLV+ 
Sbjct: 415 NADESELFIVEGLSAGGTAGMGRDSRTQAVLPLRGKVLNTQNMTTAKILDNQEIKDLVET 474

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           LG      +    LRY K+I+M DAD DG HI++LLLTFF+  M  LI Q  LFL  PPL
Sbjct: 475 LGTGIGPNFDLHRLRYGKIILMMDADSDGYHISTLLLTFFFGHMPVLITQGKLFLAQPPL 534

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           +RI  G +  YA D+ HK++ L+    +     ++ RFKGLGEM  SQLKET +D   R 
Sbjct: 535 YRIQSGNQIFYARDDLHKEEFLDSLPAN--RNPDVLRFKGLGEMTPSQLKETTLDPKTRI 592

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           LLR++I+  L    +   +  KL+G +  ER+K I E+A+ +DD+ 
Sbjct: 593 LLRIDIDNQL----EADQTFEKLLGKEPAERYKLIMEQANQVDDLD 634


>gi|290474836|ref|YP_003467716.1| DNA topoisomerase IV subunit B [Xenorhabdus bovienii SS-2004]
 gi|289174149|emb|CBJ80936.1| DNA topoisomerase IV, subunit B [Xenorhabdus bovienii SS-2004]
          Length = 631

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 254/646 (39%), Positives = 369/646 (57%), Gaps = 26/646 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  IEV L
Sbjct: 4   SSYNAEAIEVLSGLEPVRRRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHAKHIEVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V+D+GRG+PV+ HP+    S +E+ILT LHAGGKF N  Y+ SGGLHGVGISV
Sbjct: 61  HSDQSLEVIDDGRGMPVDIHPE-EKVSAVELILTRLHAGGKFSNKNYQFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + VTV R + +    F  G  +  LE      +   GT + F PD + + D  
Sbjct: 120 VNALSRRVEVTVRRDSQVHQIAFESGDKVQELEVIGSCGKRNTGTSVHFWPD-ESYFDIP 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F A+RL  + ++KA L   V+  +       E       +++ +  GL  YL   +   
Sbjct: 179 RFSASRLTHLLKAKAVLCPGVEIVFKDKLAGTE-------QKWCYADGLTDYLLEAVNGL 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +    F G           V+WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 VTLPQTPFVGVLRGDTE---AVDWALLWLPEGGELLAESYVNLIPTIQGGTHVNGLRQGL 288

Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E      R + + +DD+      +LS+ +++P+FAGQTK +L S  +   V 
Sbjct: 289 LDAMREFCEFRNILPRGVKLSADDIWDRCAYVLSLKMQDPQFAGQTKERLSSRQSAAFVS 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             ++D F  +L Q+  +A +L E  I  ++ R+R    ++V RK       LPGKLADC+
Sbjct: 349 GVVKDAFSLWLNQHIQDAEQLAEMAIASAQRRMR--AAKKVVRKKLTNGPALPGKLADCT 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     S+++  +Q++ D+ 
Sbjct: 407 SQDLKLTELFLVEGDSAGGSAKQARDREYQAIMPLRGKILNTWEVSSDEVLASQEVHDIS 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S      LRY KV I+ DAD DG HIA+LL   F +    L+++ H+++  P
Sbjct: 467 VAIGIDPDSDDL-SQLRYGKVCILADADSDGLHIATLLCALFVRHFLTLVKRGHVYMAMP 525

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G +  YA DE  K  ILE   +  +GK  + RFKGLGEM   QL+ET +D N 
Sbjct: 526 PLYRIDLGKEVHYALDEGEKGAILERLSRK-RGKPNVQRFKGLGEMNPIQLRETTLDPNT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++ I+ D  + ++T   ++ L+  K +++R  ++QE+ + ID
Sbjct: 585 RRLVQLTIDDD--NYQETFSVMDMLLAKKRSEDRRNWLQEKGNSID 628


>gi|126208721|ref|YP_001053946.1| DNA topoisomerase IV subunit B [Actinobacillus pleuropneumoniae
           L20]
 gi|307250504|ref|ZP_07532449.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|126097513|gb|ABN74341.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|306857446|gb|EFM89557.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 637

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 251/650 (38%), Positives = 370/650 (56%), Gaps = 28/650 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y A  I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE ++GYA+ I+V L
Sbjct: 4   KRYGADEITVLKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALSGYASQIDVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V+DNGRG+PV+ H      S +E+I+T LHAGGKF N  Y  SGGLHGVGISV
Sbjct: 61  HTDNSLEVIDNGRGMPVDIHS-TEKISGVELIMTKLHAGGKFSNKNYTFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + + + R   I++  F  G+ +  L       + + GT + F P+PK F    
Sbjct: 120 VNALSQRVEIKIKRNGEIYTIAFENGVKVEELTVIGSCPKKQTGTTVRFYPNPKYFDSPR 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L  ++   +         +     E +Y+  GL  YL   L+  
Sbjct: 180 -FSVSRLRHLLRAKAVLCPKLTLNFVD-------HINNSSETWYYEDGLSDYLSEALKEF 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             + +  F G    +      V WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 ECLPNPPFIGDVTSETE---AVSWALTWLPEGGELVAESYVNLIPTAQGGTHVNGLRNGL 288

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
            + + ++ E+     +++ + +DD+      +LS+ I+EP+FAGQTK +L S  A   V+
Sbjct: 289 LKAMVEFCEIHNLLPKSVKLTADDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVD 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
           + ++D F  +L QN      + E  I  ++ RLR    ++V RK  +    LPGKLADC+
Sbjct: 349 STIKDAFSLWLNQNVQTGKLIAEMAISSAQSRLR--AAKKVVRKKLVSGPALPGKLADCT 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN     S+++  +Q++ D+ 
Sbjct: 407 SQDLSRTELFLVEGDSAGGSAKQARDKDYQAILPLRGKILNTWEVSSDQVLASQEVHDIA 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG    S    ++LRY KV I+ DAD DG HIA+LL   F +   +L++  H+++  P
Sbjct: 467 VALGIDPDSDSL-DELRYGKVCILADADSDGLHIATLLCALFLRHFPNLVKNGHVYVAMP 525

Query: 578 PLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PL+RI  G  +  YA DE  K+ IL    K  KGK  + RFKGLGEM  SQL+ET MD +
Sbjct: 526 PLYRIDIGKDEVHYALDEAEKEAILARLAKK-KGKPNVQRFKGLGEMNPSQLRETTMDPS 584

Query: 637 KRTLLRVEINK---DLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ +++      +  DT + ++ L+  K A++R +++Q R    +
Sbjct: 585 TRRLVQLTLDELDVAEENEPDTFEIMDMLLAKKRAEDRKQWLQNRGDEAE 634


>gi|120555705|ref|YP_960056.1| DNA topoisomerase IV subunit B [Marinobacter aquaeolei VT8]
 gi|120325554|gb|ABM19869.1| DNA topoisomerase IV subunit B [Marinobacter aquaeolei VT8]
          Length = 631

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 258/649 (39%), Positives = 367/649 (56%), Gaps = 28/649 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           +   Y+A +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A  I+V
Sbjct: 2   SEQQYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHARRIDV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +  L+V D+GRG+PV+ H K      +E+IL+ LHAGGKF    Y  SGGLHGVG+
Sbjct: 59  VLHSDNSLSVEDDGRGMPVDLH-KEEGLPGVELILSRLHAGGKFSQGNYNFSGGLHGVGV 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS  L VT+ R   +    F+ G   S LE  + V +   GTR+ F PDPK F  
Sbjct: 118 SVVNALSTHLEVTIKRDGQVHRMTFANGDKASELEVVDTVGKRNTGTRLKFTPDPKYFDS 177

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F  +RL    ++KA L   +   +  +K         EK+E+++  GL+ YL+T L 
Sbjct: 178 PN-FSVSRLRHNLRAKAVLCPGLTVTFLQEK-------TGEKDEWFYEDGLRDYLRTALA 229

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRV 336
           +   +  E FTG        +  V+WAI W  E  +    SY N I T +GGTH +GLR 
Sbjct: 230 DIEAVPLEPFTGSFSGN---KEAVDWAIQWLPEGGDAVLESYVNLIPTAQGGTHVNGLRT 286

Query: 337 ALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            L   ++++ E      R + +  +D+      +LS  ++EP+F+GQTK +L S +A   
Sbjct: 287 GLLEAMREFCEFRNLLPRGVKLSPEDIWERVAYVLSFKMQEPQFSGQTKERLSSREAAAF 346

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           V   ++D F  +L Q+   A  L E  I  ++ RLR    ++V RK       LPGKLAD
Sbjct: 347 VSGVVKDAFSLWLNQHTDIAEALAELFISNAQRRLR--ASKKVARKKVTSGPALPGKLAD 404

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS      +ELF+VEGDSAGGSAKQAR+R  QAV+PLRGKILN     S +I  +Q++ D
Sbjct: 405 CSGGDTARSELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVDSGEILASQEVHD 464

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L+   H+F+ 
Sbjct: 465 IAVAIGVDPGSDDL-AGLRYNKICILADADSDGLHIATLLCALFVKHFRPLVAAGHVFVA 523

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMD 634
            PPL+R+  G ++ YA DE  KQ I++       KGKI+++RFKGLGEM   QL+ET M 
Sbjct: 524 MPPLYRVDLGKETFYALDEHEKQGIIDRLAAENRKGKIQVTRFKGLGEMNPLQLRETTMA 583

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            + R L+ + + +      DT + ++ L+G K A +R  +++   +  D
Sbjct: 584 PDTRRLVMLTLEEG----DDTDERMDMLLGKKRASDRRAWLEAYGNMAD 628


>gi|126175769|ref|YP_001051918.1| DNA topoisomerase IV subunit B [Shewanella baltica OS155]
 gi|160873940|ref|YP_001553256.1| DNA topoisomerase IV subunit B [Shewanella baltica OS195]
 gi|217972001|ref|YP_002356752.1| DNA topoisomerase IV subunit B [Shewanella baltica OS223]
 gi|304411164|ref|ZP_07392779.1| DNA topoisomerase IV, B subunit [Shewanella baltica OS183]
 gi|307306459|ref|ZP_07586202.1| DNA topoisomerase IV, B subunit [Shewanella baltica BA175]
 gi|125998974|gb|ABN63049.1| DNA topoisomerase IV subunit B [Shewanella baltica OS155]
 gi|160859462|gb|ABX47996.1| DNA topoisomerase IV, B subunit [Shewanella baltica OS195]
 gi|217497136|gb|ACK45329.1| DNA topoisomerase IV, B subunit [Shewanella baltica OS223]
 gi|304350357|gb|EFM14760.1| DNA topoisomerase IV, B subunit [Shewanella baltica OS183]
 gi|306910750|gb|EFN41178.1| DNA topoisomerase IV, B subunit [Shewanella baltica BA175]
 gi|315266172|gb|ADT93025.1| DNA topoisomerase IV, B subunit [Shewanella baltica OS678]
          Length = 628

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 252/647 (38%), Positives = 361/647 (55%), Gaps = 28/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y + +I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AG+A  IEV 
Sbjct: 2   TNQYTSDAIEVLNGLDPVKRRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHATKIEVV 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V D+GRG+PV+ HP+      +E+ILT LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHTDNSLEVTDDGRGMPVDIHPE-EGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + VTV R   ++   F  G  +  L       R   GTR+ F PD   F   
Sbjct: 118 VVNALSRRVEVTVRRDGQVYDIAFENGFKVEELRPTGTCGRRNTGTRVHFWPDASYFDSA 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  ++L+ + ++KA L   ++  ++            E  E+++  GL  YL+  + +
Sbjct: 178 N-FSNSKLIYLLRAKAVLCPGLRIKFTNK-------QTNEVHEWFYESGLTDYLKAAIGD 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVA 337
              +  E F G  +         +WAI W  E  E    SY N I T  GGTH +G R  
Sbjct: 230 NLRLPDEPFVGCFKG---QLEAADWAITWLPEGGESIGESYVNLIPTPLGGTHVNGFRQG 286

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R I +  +D+   A  ILSV ++EP+FAGQTK KL S      V
Sbjct: 287 LLESMREFCEFRNLIPRGIKLSPEDIWDRAAFILSVKMQEPQFAGQTKEKLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              +RD F  +L  N   A  L E  I  ++ RL+  K  +V RK       LPGKL DC
Sbjct: 347 SGVVRDAFSLWLNSNTELAESLAEMCINNAQSRLKAAK--KVARKKVTSGPALPGKLTDC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S       ELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     + ++  +Q++ D+
Sbjct: 405 SGQDPMRGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+GC   S     +LRY K+ I+ DAD DG HIA+LL   F +    L+EQ H+++  
Sbjct: 465 SVAIGCDPDSSDI-SELRYGKICILADADSDGLHIATLLCALFLKHYRILVEQGHVYIAM 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
           PPLFRI  G +  YA DE  +  IL+    ++ KGK++++RFKGLGEM   QL+ET MD 
Sbjct: 524 PPLFRIDIGKEVYYALDEAERAGILDRIAAENKKGKVQVTRFKGLGEMNPLQLRETTMDP 583

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFI 681
           N R L+++ I+     +++T   ++ L+  K + +R  +++++    
Sbjct: 584 NTRRLVQLTIDD----IEETDALMDMLLAKKRSPDRKNWLEDKGDMA 626


>gi|307261731|ref|ZP_07543397.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306868549|gb|EFN00360.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 637

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 251/650 (38%), Positives = 370/650 (56%), Gaps = 28/650 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y A  I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE ++GYA+ I+V L
Sbjct: 4   KRYGADEITVLKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALSGYASQIDVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V+DNGRG+PV+ H      S +E+I+T LHAGGKF N  Y  SGGLHGVGISV
Sbjct: 61  HTDNSLEVIDNGRGMPVDIHS-TEKISGVELIMTKLHAGGKFSNKNYTFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + + + R   I++  F  G+ +  L       + + GT + F P+PK F    
Sbjct: 120 VNALSQRVEIKIKRNGEIYTIAFENGVKVEELTVIGSCPKKQTGTTVRFYPNPKYFDSPR 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L  ++   +         +     E +Y+  GL  YL   L+  
Sbjct: 180 -FSVSRLRHLLRAKAVLCPKLTLNFVD-------HINNSSETWYYEDGLSDYLSEALKEF 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             + +  F G    +      V WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 ECLPNPPFIGDVTSETE---AVSWALTWLPEGGELVAESYVNLIPTAQGGTHVNGLRNGL 288

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
            + + ++ E+     +++ + +DD+      +LS+ I+EP+FAGQTK +L S  A   V+
Sbjct: 289 LKAMVEFCEIHNLLPKSVKLTTDDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVD 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
           + ++D F  +L QN      + E  I  ++ RLR    ++V RK  +    LPGKLADC+
Sbjct: 349 STIKDAFSLWLNQNVQTGKLIAEMAISSAQSRLR--AAKKVVRKKLVSGPALPGKLADCT 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN     S+++  +Q++ D+ 
Sbjct: 407 SQDLSRTELFLVEGDSAGGSAKQARDKDYQAILPLRGKILNTWEVSSDQVLASQEVHDIA 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG    S    ++LRY KV I+ DAD DG HIA+LL   F +   +L++  H+++  P
Sbjct: 467 VALGIDPDSDSL-DELRYGKVCILADADSDGLHIATLLCALFLRHFPNLVKNGHVYVAMP 525

Query: 578 PLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PL+RI  G  +  YA DE  K+ IL    K  KGK  + RFKGLGEM  SQL+ET MD +
Sbjct: 526 PLYRIDIGKDEVHYALDEAEKEAILARLAKK-KGKPNVQRFKGLGEMNPSQLRETTMDPS 584

Query: 637 KRTLLRVEINK---DLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ +++      +  DT + ++ L+  K A++R +++Q R    +
Sbjct: 585 TRRLVQLTLDELDVAEENEPDTFEIMDMLLAKKRAEDRKQWLQNRGDEAE 634


>gi|319790160|ref|YP_004151793.1| DNA gyrase, B subunit [Thermovibrio ammonificans HB-1]
 gi|317114662|gb|ADU97152.1| DNA gyrase, B subunit [Thermovibrio ammonificans HB-1]
          Length = 804

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 245/582 (42%), Positives = 347/582 (59%), Gaps = 16/582 (2%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
              DNYDAS+I++LEGLE VR RPGMYIG T    LHHL  EV+DN++DE +AGY   IE
Sbjct: 3   QKQDNYDASAIKVLEGLEAVRKRPGMYIGDTGVYGLHHLVFEVVDNSVDEALAGYCTEIE 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +  +TV DNGRGIPV+ HP++  K   EI+LT LHAGGKF+   Y+ SGGLHGVG
Sbjct: 63  VTIHPDNSITVADNGRGIPVDIHPEY-GKPAAEIVLTVLHAGGKFEKKAYKYSGGLHGVG 121

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+ L + + R   ++ Q + RG P++         NKRGT ITF+PDP+IF  
Sbjct: 122 VSVVNALSEWLKLEIHRDGKVYKQVYERGKPVTQFTCVG-TSNKRGTIITFKPDPEIFEV 180

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L    +  A+L+  +K   + ++        P++E FY+ GG+  +++   E
Sbjct: 181 T-EFSWDILANRLRELAFLNKGLKITLTDER-----VDPPKREVFYYEGGIVEFVKKINE 234

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            +  +  E      EK       VE A+ +      +I S+ N I T EGGTH SG R A
Sbjct: 235 KKDPLFPEPIYITGEKDDIL---VEVALQYNSTYTEQIFSFVNNINTREGGTHVSGFRSA 291

Query: 338 LTRGIKKYAELTQ---NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           LTR I K+ E          ISI  DD     V ++SV +  P+F GQTK KL + + + 
Sbjct: 292 LTRAITKFIEEHNLLPKNSKISITGDDTREGLVAVISVKVPNPQFEGQTKAKLGNSEVRP 351

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            V + + +   +YL + P    K+ E VI  +  R   ++ RE   RK+A+ +  LPGKL
Sbjct: 352 VVASVVYEKLWNYLTERPDIGRKIAEKVITAARAREAAKRARELTRRKSALEEFSLPGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS+     TELF+VEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  EK+ +N +I
Sbjct: 412 ADCSERDPQKTELFLVEGDSAGGSAKQGRDRRFQAILPLKGKIINVEKARIEKVLSNDEI 471

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ ALG      +    LRY K+IIMTDADVDGAHI +LLLTFF+++  +++E+ HL+
Sbjct: 472 KTIITALGTGVGKNFDISKLRYNKIIIMTDADVDGAHIRTLLLTFFFRQFPEIVERGHLY 531

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615
           +  PPL+R+ +G K +Y   ++  + ++ EF       ++  
Sbjct: 532 IAQPPLYRLKKGKKEMYIKSDKELESVILEFALDSVKLLDPQ 573



 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 8/132 (6%)

Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613
           LL++  Y++   L  +    L  PP ++  +  K +     E     L +    G+  I 
Sbjct: 680 LLISDLYRQARKLKGEIRAKLGEPP-YKAQKKGKELTFKTLEELYTFLID---SGREGIY 735

Query: 614 ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKF 673
           I R+KGLGEM   QL ET M+   RTLL+V +   +       +    LMG K + R +F
Sbjct: 736 IQRYKGLGEMNPEQLWETTMNPENRTLLKVTVEDAV----SADEVFTVLMGDKVEPRREF 791

Query: 674 IQERASFIDDVG 685
           IQ+ A  + ++ 
Sbjct: 792 IQKFAKEVRNLD 803


>gi|53728805|ref|ZP_00135065.2| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), B subunit [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
          Length = 637

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 251/650 (38%), Positives = 370/650 (56%), Gaps = 28/650 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y A  I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE ++GYA+ I+V L
Sbjct: 4   KRYGADEITVLKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALSGYASQIDVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V+DNGRG+PV+ H      S +E+I+T LHAGGKF N  Y  SGGLHGVGISV
Sbjct: 61  HTDNSLEVIDNGRGMPVDIHS-TEKISGVELIMTKLHAGGKFSNKNYTFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + + + R   I++  F  G+ +  L       + + GT + F P+PK F    
Sbjct: 120 VNALSQRVEIKIKRNGEIYTIAFENGVKVEELTVIGSCPKKQTGTTVRFYPNPKFFDSPR 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L  ++   +         +     E +Y+  GL  YL   L+  
Sbjct: 180 -FSVSRLRHLLRAKAVLCPKLTLNFVD-------HINNSSETWYYEDGLSDYLSEALKEF 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             + +  F G    +      V WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 ECLPNPPFIGDVTSETE---AVSWALTWLPEGGELVAESYVNLIPTAQGGTHVNGLRNGL 288

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
            + + ++ E+     +++ + +DD+      +LS+ I+EP+FAGQTK +L S  A   V+
Sbjct: 289 LKAMVEFCEIHNLLPKSVKLTADDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVD 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
           + ++D F  +L QN      + E  I  ++ RLR    ++V RK  +    LPGKLADC+
Sbjct: 349 STIKDAFSLWLNQNVQTGKLIAEMAISSAQSRLR--AAKKVVRKKLVSGPALPGKLADCT 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN     S+++  +Q++ D+ 
Sbjct: 407 SQDLSRTELFLVEGDSAGGSAKQARDKDYQAILPLRGKILNTWEVSSDQVLASQEVHDIA 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG    S    ++LRY KV I+ DAD DG HIA+LL   F +   +L++  H+++  P
Sbjct: 467 VALGIDPDSDSL-DELRYGKVCILADADSDGLHIATLLCALFLRHFPNLVKNGHVYVAMP 525

Query: 578 PLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PL+RI  G  +  YA DE  K+ IL    K  KGK  + RFKGLGEM  SQL+ET MD +
Sbjct: 526 PLYRIDIGKDEVHYALDEAEKEAILARLAKK-KGKPNVQRFKGLGEMNPSQLRETTMDPS 584

Query: 637 KRTLLRVEINK---DLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ +++      +  DT + ++ L+  K A++R +++Q R    +
Sbjct: 585 TRRLVQLTLDELDVAEENEPDTFEIMDMLLAKKRAEDRKQWLQNRGDEAE 634


>gi|162447245|ref|YP_001620377.1| DNA topoisomerase IV subunit B [Acholeplasma laidlawii PG-8A]
 gi|161985352|gb|ABX81001.1| DNA topoisomerase IV, subunit B [Acholeplasma laidlawii PG-8A]
          Length = 651

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 247/662 (37%), Positives = 356/662 (53%), Gaps = 34/662 (5%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A  NYD +SI+ILEGLE VR RPGMYIG TD + LHHL  E++DNAMDEV+AG+ + I V
Sbjct: 2   AKTNYDETSIQILEGLEAVRKRPGMYIGSTDHRGLHHLVWEIVDNAMDEVLAGFGSEITV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGVG 158
           ++  +  + V+D+GRG+P + H       T ++I T LHAGGKF  +  Y+++GGLHGVG
Sbjct: 62  TIKPDNAIEVLDDGRGMPYKKH--TSGVPTTQVIFTVLHAGGKFGGDGAYKVAGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS  L VTV +   IF Q+F  G      ++K     K GT++ F+PDP IF  
Sbjct: 120 SSVVNALSSVLEVTVYKDGGIFRQRFENGGKKIFNQEKIGDTKKTGTQVYFKPDPSIFST 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              ++   + +  +  AYL   +K     ++         +KE F F  G+K Y++    
Sbjct: 180 TL-YNYDTIKERLKESAYLIKGLKINLIDER-------NNKKETFKFDEGIKAYVEFMNT 231

Query: 279 NRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            ++ +       G           VE A+ + +     I S+ N + T +GGTHE G + 
Sbjct: 232 GKNALHDVTDVEGTFNTAKDSAIEVEVALQYTDSYSENIISFVNNVRTKDGGTHEIGFKS 291

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392
           ALT+ I  YA       ++  +I   D+      I+S+ I E   EF GQTK KL + +A
Sbjct: 292 ALTKVINDYARKYNHIKEKDSNIDGVDIREGLTAIVSLRIPETVLEFEGQTKGKLGTPEA 351

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRL 449
           +  +E    + F+ +L +N   A  ++   +  +  R   RK RE  R    R    + L
Sbjct: 352 RNALETVFYEKFNTFLEENSDAALSIITKAVAAANAREAARKAREEARAGKKRSKKEVIL 411

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
            GKL           ELF+VEGDSAGGSAKQ RNR  QA+LPLRGK++N     +E I  
Sbjct: 412 SGKLTPAQGKDKSINELFLVEGDSAGGSAKQGRNRRFQAILPLRGKVINTERTNTETILK 471

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N++I  ++  +G      +  +   Y KVIIMTDAD DGAHI +LLLTFF++ M  LIE 
Sbjct: 472 NEEISTMIYTIGADFGEDFDIKKCNYNKVIIMTDADDDGAHIQTLLLTFFFRYMRPLIEA 531

Query: 570 KHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
             L++  PP +++T       ++VYA  +E  ++ LE   ++      I+RFKGLGEM  
Sbjct: 532 GRLYIAQPPFYKVTYKKNKKEETVYAWSDEDLKETLESIGQN----YMITRFKGLGEMNF 587

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI--DD 683
            QL ET M+   RTL++V I+    S       I+ LMG +   R ++I+    F   D+
Sbjct: 588 YQLWETTMNPESRTLIQVTIDDLNVS----DKHISVLMGDQVAPRREWIEANVDFEVTDE 643

Query: 684 VG 685
             
Sbjct: 644 FD 645


>gi|152997556|ref|YP_001342391.1| DNA topoisomerase IV subunit B [Marinomonas sp. MWYL1]
 gi|150838480|gb|ABR72456.1| DNA topoisomerase IV, B subunit [Marinomonas sp. MWYL1]
          Length = 632

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 247/647 (38%), Positives = 358/647 (55%), Gaps = 24/647 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           ++  Y+A SI +L GLEPV+ RPGMY   TD    +HL  EVIDN++DE +A +A+ IEV
Sbjct: 2   SAKEYNAGSIEVLSGLEPVQKRPGMY---TDTSRPNHLAQEVIDNSVDEALASHADRIEV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +G L+V DNGRG+PV+ HP+    S +E+ILT LHAGGKF    Y+ SGGLHGVG+
Sbjct: 59  ILYKDGSLSVEDNGRGMPVDIHPE-EGISGVELILTKLHAGGKFSGDNYQFSGGLHGVGV 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS  L V V R    +   F  G   S L++   V +   GT++ F  D K F +
Sbjct: 118 SVVNALSTSLEVWVRRNGIQYHIGFENGFKTSELKEIGTVGKKNTGTKVKFTADSKYFDN 177

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F  +RL  + ++KA L   +   +       E       EE++F  GLK YL    +
Sbjct: 178 P-KFSISRLKHLLKAKAVLCSGLHVVFIDQTGSEEAR-----EEWFFQDGLKDYLAQAND 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336
              L+  E F G   +K      V+WA+ W  E  E    SY N I T +GGTH +GLR 
Sbjct: 232 GFVLLPDEPFIGGLTEKT---QGVDWAVQWLPEGGELVTESYVNLIPTAQGGTHVNGLRT 288

Query: 337 ALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            L   I+++ +      R + + ++D+      +LS  I+EP+F+GQTK +L S      
Sbjct: 289 GLLEAIREFCDFHNLLPRGVKLTAEDVWDRCSYVLSAKIQEPQFSGQTKERLSSRQIVAF 348

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           +   ++D F  +L  +  +  K+ + VI  +++RL+    ++V RK   +   LPGKLAD
Sbjct: 349 ISATVKDSFSLWLNSHVEDGKKIADIVINSAQKRLK--DSKKVVRKRVTQGPALPGKLAD 406

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS   +  +ELF+VEGDSAGGSAKQAR +  QA+LPLRGKILN     S ++  +Q+I D
Sbjct: 407 CSGQDSSRSELFLVEGDSAGGSAKQAREKDFQAILPLRGKILNTWEVDSNQVLASQEIHD 466

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  ALG     +     LRY KV I+ DAD DG HIA+L+   F +    L+   H+F+ 
Sbjct: 467 ISVALGVDPGDEDL-SGLRYGKVCILADADSDGLHIATLICALFVRHFPALVNSGHVFVA 525

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK-IEISRFKGLGEMLASQLKETAMD 634
            PPL+RI  G +  YA D+E K   L +     K     + RFKGLGEM  SQL+ET M 
Sbjct: 526 MPPLYRIDIGKEVYYALDDEEKDITLHKIAAENKRGTPNVQRFKGLGEMNPSQLRETTMA 585

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
            + R L+++ +    ++ +     ++K    +A +R  +++   +  
Sbjct: 586 PDTRRLIQLTMEDKPDTNELLDKLLSK---KRAGDRKSWLETYGNLA 629


>gi|145297604|ref|YP_001140445.1| DNA topoisomerase IV subunit B [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850376|gb|ABO88697.1| DNA topoisomerase IV, B subunit [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 631

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 246/646 (38%), Positives = 360/646 (55%), Gaps = 23/646 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  +EV+
Sbjct: 2   STQYNADAIEVLNGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARTLEVT 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+    S +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LFEDQSLEVIDDGRGMPVDIHPE-EGVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALSD + VTV R   ++   F RG  +  L       R   GTR+ F P    F   
Sbjct: 118 VVNALSDRVEVTVRRDGQVYDIAFERGDKVQELTITGTCGRRNTGTRVRFWPQASYFDSP 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F   +L  + ++KA L   +   +              K E+ +  GLK YL   ++ 
Sbjct: 178 R-FSVTKLEHLLKAKAVLCPGLTIKFLDK-------NTGIKLEWCYEDGLKDYLVDAVKQ 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVA 337
            + +  + F G    +   +  V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 FTCLPEQPFVGAFSTE---QSAVDWALCWLPEGGECLAESYVNLIPTPQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + +  +D+      ILS+ +++P+FAGQTK +L S  +   V
Sbjct: 287 LLDAMREFCEFRNLLPRGVKLTPEDIWDRCAYILSIKMQDPQFAGQTKERLSSRQSSAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L  N   A ++ E  I  ++ RLR    + V RK   +   LPGKL DC
Sbjct: 347 SGVVKDSFSLFLNSNTELAEQIAEICISSAQRRLR--AAKTVVRKKITQGPALPGKLTDC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +       ELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     + ++  +Q++ D+
Sbjct: 405 NCADPMQGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVEAGQVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S+     LRY KV I+ DAD DG HIA+LL   F +    L+ + H+++  
Sbjct: 465 SVAIGLDPDSEDL-SGLRYGKVCILADADSDGLHIATLLCALFVRHFRTLVNKGHVYVAM 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFK-KHGKGKIEISRFKGLGEMLASQLKETAMDA 635
           PPL+RI  G +  YA DE+ K  +L+  + +  KGK+ ++RFKGLGEM   QL+ET MD 
Sbjct: 524 PPLYRIDIGKEVYYALDEDEKNGVLQRVEAEKKKGKVMVTRFKGLGEMNPKQLRETTMDP 583

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           N R L+++ + +     +  Q     L   +A +R ++++E+ +  
Sbjct: 584 NTRRLVQLTMGELEEGDETLQLMDMLLAKKRAPDRREWLEEKGNLA 629


>gi|71279877|ref|YP_270827.1| DNA topoisomerase IV subunit B [Colwellia psychrerythraea 34H]
 gi|71145617|gb|AAZ26090.1| DNA topoisomerase IV, B subunit [Colwellia psychrerythraea 34H]
          Length = 628

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 238/646 (36%), Positives = 358/646 (55%), Gaps = 26/646 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +D Y++ SI +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  I V 
Sbjct: 2   TDQYNSDSIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAQNISVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L+ +  L ++D+GRG+P + HP+    S +E+I   LHAGGKF N +Y+ SGGLHGVGIS
Sbjct: 59  LEKDQSLEIIDDGRGMPTDIHPE-EGVSGVELIFCKLHAGGKFSNKSYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V+V R + ++   F  G  +  L +   V +   GT + F PD   F   
Sbjct: 118 VVNALSTRVDVSVRRDSKVYEMAFENGDKVEELRETGTVGKRNTGTSVKFWPDASYFDTS 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L  + ++KA L   +   +    E        +K ++ +  GL  YL+  +++
Sbjct: 178 -KFSVRHLTHLLKAKAVLCPGLTIKFHDKIE-------DKKYQWCYEDGLTDYLKDSVKD 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVA 337
              +  + F G      +     +WA+ W  E  E    SY N I T  GGTH +G+R  
Sbjct: 230 YVSLPEDPFVGSF---TSQLEAADWAVTWLPEGGESIGESYVNLIPTIAGGTHVNGMRQG 286

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + +  DD+      ILS+ +++P+FAGQTK +L S      V
Sbjct: 287 LLESMREFCEFRHLLPRGVKLTPDDIWDKCSYILSIKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L ++  +A  L ++ I  +++R+R    ++V RK   +   LPGKL DC
Sbjct: 347 SGVVKDAFSLWLNEHTDKAELLADFCINNAQKRMR--ASKKVVRKKITQGPALPGKLTDC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
                  TELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     S +I  + ++ D+
Sbjct: 405 GSQDLARTELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDSGQILASVEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             ALG    S     +LRY K+ I+ DAD DG HIA+LL   F Q    L++  H+++  
Sbjct: 465 SVALGIDPDSDDL-SELRYGKICILADADSDGLHIATLLCALFMQHFLPLVQAGHVYVAM 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDA 635
           PPL+RI  G +  YA DE  K  IL+  +   K GK+ + RFKGLGEM   QL+ET MD 
Sbjct: 524 PPLYRIDIGKEVFYALDEAEKDGILDRIEAEKKRGKVNVQRFKGLGEMNPPQLRETTMDP 583

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           N R L+++ +++   +++     ++K    ++ +R  ++Q +    
Sbjct: 584 NTRRLVQLTVDEHSETMELMDMLLSK---KRSPDRKIWLQSKGDMA 626


>gi|296106278|ref|YP_003617978.1| DNA topoisomerase IV subunit B [Legionella pneumophila 2300/99
           Alcoy]
 gi|295648179|gb|ADG24026.1| DNA topoisomerase IV subunit B [Legionella pneumophila 2300/99
           Alcoy]
          Length = 626

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 247/644 (38%), Positives = 356/644 (55%), Gaps = 22/644 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S+NY A +I +L GLEPV+ RPGMY   TD    +HL  EVIDN++DEV+AG+A+ I V+
Sbjct: 2   SENYTAEAIEVLSGLEPVQRRPGMY---TDTTRPNHLAQEVIDNSVDEVLAGFASRIIVT 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +G + V D+GRG+PV+ HP+    S +E+I+T LHAGGKF +  Y  SGGLHGVG+S
Sbjct: 59  LHEDGSIEVEDDGRGMPVDLHPQL-GLSGVEVIMTRLHAGGKFSDKNYSFSGGLHGVGVS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPDPKIFGDK 219
           VVNALS+ L VT+ R   I+   F+ G  L  L +    + +  GT I F P+ K F   
Sbjct: 118 VVNALSERLDVTIKRNGIIYQMTFANGDKLCELNETGVTKKRETGTVIRFWPNGKYFDTT 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
                  L  + ++KA L   +   +       E         + +  GL  YLQ  L  
Sbjct: 178 -KISVKHLTHVLRAKAVLCSGLSMTFINKITNEE-------MNWCYEQGLTDYLQQTLP- 228

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
                 E       K          A +         SY N I T +GGTH +GLR  L 
Sbjct: 229 -EDYLPEEPFAGAFKSDEATVDWALAWSDSANGNLNESYVNLIPTIQGGTHVNGLRSGLF 287

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             + ++ EL     R + + +DDL  S   +LS+ ++EP+FAGQTK +L S      V N
Sbjct: 288 EAMSEFCELRNLLPRGVKLTADDLWESCQYVLSIKMKEPQFAGQTKERLSSRQTSGLVSN 347

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L Q+  +   +    IER+++RL+  + ++V RK   +   LPGKLADC Q
Sbjct: 348 VIKDAFAIWLNQHRNQGEAIAALAIERAQKRLK--QAKQVARKRVSQGPALPGKLADCLQ 405

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 ELF+VEGDSAGGSAKQARN+  QA+LPLRGKILN     S ++  +Q+I D+  
Sbjct: 406 TDLSQAELFLVEGDSAGGSAKQARNKDYQAILPLRGKILNSWEVDSSQVLASQEIHDISV 465

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+G    S    E LRY K+ I+ DAD DGAHIA+L+   F +    L++  H+F+  PP
Sbjct: 466 AIGVDPGSSDL-EGLRYGKICILADADSDGAHIATLICALFLRHFKPLVKAGHVFVAMPP 524

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+RI  G    YA D+E K +I++   +  K K+ + RFKGLGEM   QL+ET MD N R
Sbjct: 525 LYRIDAGKLIHYALDDEEKNRIVQHLSQTTKSKVNVQRFKGLGEMNPIQLRETTMDPNTR 584

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            L+++ ++ +  +       +NK    +A +R  +++ + +  +
Sbjct: 585 RLVQLTLDDEEQTEAIMDMMLNK---KRAADRKLWLETKGNLAE 625


>gi|329893839|ref|ZP_08269910.1| Topoisomerase IV subunit B [gamma proteobacterium IMCC3088]
 gi|328923438|gb|EGG30753.1| Topoisomerase IV subunit B [gamma proteobacterium IMCC3088]
          Length = 629

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 252/649 (38%), Positives = 360/649 (55%), Gaps = 28/649 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y A  I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A+ I+V +
Sbjct: 2   SQYTAQDIEVLTGLEPVRKRPGMY---TDTARPNHLAQEVIDNSVDEALAGFASEIDVVV 58

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G ++V DNGRG+PV+ HP+   K  +E+IL+TLHAGGKF N  Y+ SGGLHGVG+SV
Sbjct: 59  FKDGSVSVSDNGRGMPVDIHPEQ-GKPGVEVILSTLHAGGKFSNKNYQFSGGLHGVGVSV 117

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  L +T+ R   ++S  F+ G     LE  +   R   GT + F PDP+ F    
Sbjct: 118 VNALSQRLEITIKRDAQVYSMAFAGGEKSRDLEVIDTCGRRNTGTTVHFWPDPQYFDSVN 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
                RL  + ++KA L   ++  +  D          E E +Y+  GLK YLQ   +  
Sbjct: 178 -ISIPRLKHVLRAKAVLCPGLRVNFLDD-------AKKESESWYYEDGLKDYLQQATDGY 229

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
            ++    +TG           V+WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 230 EVLPPTPYTGSFSA---QHSAVDWAVQWLPEGGELITESYVNLIPTSQGGTHVNGLRTGL 286

Query: 339 TRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++ + E  +   R I +  +D+      +LSV + +P+F+GQTK +L S +A   V 
Sbjct: 287 LDALRDFCELRSLLPRGIKLAPEDIWDRCAFVLSVKLEDPQFSGQTKERLSSREAAAFVS 346

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
              +D F  +L Q    A +L E  I  ++ R+R    ++V RK       LPGKLADCS
Sbjct: 347 GVAKDAFSLWLNQETEYAEQLAELCINNAQRRVR--SAKKVVRKKVTSGPALPGKLADCS 404

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                  ELF+VEGDSAGGSAKQAR+R  QA+LPLRGKILN     S++I  +Q++ ++ 
Sbjct: 405 GEDPARGELFLVEGDSAGGSAKQARDREFQAILPLRGKILNTWEVDSQEILASQEVHNIS 464

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG    S      LRY KV I+ DAD DG HIA+L+   F +    LI   H+++  P
Sbjct: 465 VALGVDPASDDL-SGLRYHKVCILADADSDGLHIATLICALFVRHFKPLITAGHVYVAMP 523

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDAN 636
           PL+RI  G +  YA D+  KQ IL+  +   K  K+ + RFKGLGEM   QL+ET M  +
Sbjct: 524 PLYRIDVGKEVYYALDDSEKQGILDRIEAENKRAKVNVQRFKGLGEMNPLQLRETTMAPD 583

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDV 684
            R L+++ ++       DT    + L+  K + +R ++++ +    + +
Sbjct: 584 TRRLVQLRLDHG----DDTMQVFDMLLAKKRSSDRRQWLETKGDIAEVL 628


>gi|119503630|ref|ZP_01625713.1| DNA topoisomerase IV subunit B [marine gamma proteobacterium
           HTCC2080]
 gi|119460692|gb|EAW41784.1| DNA topoisomerase IV subunit B [marine gamma proteobacterium
           HTCC2080]
          Length = 629

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 245/647 (37%), Positives = 363/647 (56%), Gaps = 28/647 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A+ ++V L
Sbjct: 2   SQYNADAIEVLTGLEPVRKRPGMY---TDTLRPNHLAQEVIDNSVDEALAGHADQVDVVL 58

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G +++ DNGRG+PV+ HP       +E+IL+TLHAGGKF +  Y+ SGGLHGVG+SV
Sbjct: 59  HSTGGISIQDNGRGMPVDLHP-VQKLPGVEVILSTLHAGGKFSDKNYQFSGGLHGVGVSV 117

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  L +T+ R   I++  F  G  +  L       +   GT+I F PDP+ F    
Sbjct: 118 VNALSKRLDITIKRDGNIYTMAFEGGEKVEDLAVAGTCGKRNTGTQIRFDPDPQYFDSPN 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F   RL+ + ++KA L   ++     +K+        E+ E+++  G+  YL     + 
Sbjct: 178 -FSMPRLIHVLRAKAVLCPGLRVTLLDEKKN-------ERSEWFYEDGISDYLMDATIDY 229

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVAL 338
            +I  + FT     +      V+WAI W  E  ++   SY N I T +GGTH +GLR  L
Sbjct: 230 PVIPEKPFTYHFSGETE---AVDWAIQWLPEGGDVVAESYVNLIPTAQGGTHVNGLRSGL 286

Query: 339 TRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E  +   R + + ++D+      +LS  +++P+F+GQTK +L S +A   V 
Sbjct: 287 LEALREFCELRSLLPRGVKLTAEDIWDRCCFVLSSKLQDPQFSGQTKERLSSREAAGFVS 346

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
              +D F  +L Q+  EA  L E  I R++ RLR    ++V RK       LPGKLADC+
Sbjct: 347 GVAKDAFSLWLNQHTAEAELLAELCINRAQARLR--SAKKVVRKKVTSGPALPGKLADCT 404

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                  ELF+VEGDSAGGSAKQARNR  QA+LPLRGKILN     +++I  + ++ ++ 
Sbjct: 405 SEDPAYGELFLVEGDSAGGSAKQARNREFQAILPLRGKILNTWEVDAQEILASAEVYNIS 464

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG    S      LRY KV I+ DAD DG HIA+L+   F +    L+   H+++  P
Sbjct: 465 VALGIDPASDDL-SGLRYHKVCILADADSDGLHIATLICALFLRHFQPLVRAGHVYVAMP 523

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDAN 636
           PL+RI  G +  YA D+  +  ILE      K  K  + RFKGLGEM   QL+ET MD +
Sbjct: 524 PLYRIDVGKEVYYALDDAERNGILERLAAENKRAKPNVQRFKGLGEMNPGQLRETTMDPD 583

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ ++    +  DT  + + L+  K + +R  +++ +    D
Sbjct: 584 TRRLVQLVLD----ADADTHGTFDMLLAKKRSGDRKTWLESKGDLAD 626


>gi|307609486|emb|CBW98983.1| topoisomerase IV subunit B [Legionella pneumophila 130b]
          Length = 626

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 246/644 (38%), Positives = 356/644 (55%), Gaps = 22/644 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S+NY A +I +L GLEPV+ RPGMY   TD    +HL  EVIDN++DEV+AG+A+ I V+
Sbjct: 2   SENYTAEAIEVLSGLEPVQRRPGMY---TDTTRPNHLAQEVIDNSVDEVLAGFASRIIVT 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +G + V D+GRG+PV+ HP+    S +E+I+T LHAGGKF +  Y  SGGLHGVG+S
Sbjct: 59  LHEDGSIEVEDDGRGMPVDLHPQL-GLSGVEVIMTRLHAGGKFSDKNYSFSGGLHGVGVS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPDPKIFGDK 219
           VVNALS+ L VT+ R   I+   F+ G  L  L +    + +  GT I F P+ K F   
Sbjct: 118 VVNALSERLDVTIKRNGIIYQMTFANGDKLCELNETGVTKKRETGTVIRFWPNGKYFDTT 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
                  L  + ++KA L   +   +       E         + +  GL  YL+  L  
Sbjct: 178 -KISVKHLTHVLRAKAVLCSGLSMTFINKITNEE-------MNWCYEQGLTDYLRQTLP- 228

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
                 E       K          A +         SY N I T +GGTH +GLR  L 
Sbjct: 229 -EDYLPEEPFAGAFKSDEATVDWALAWSDSANGNLNESYVNLIPTIQGGTHVNGLRSGLF 287

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             + ++ EL     R + + +DDL  S   +LS+ ++EP+FAGQTK +L S      V N
Sbjct: 288 EAMSEFCELRNLLPRGVKLTADDLWESCQYVLSIKMKEPQFAGQTKERLSSRQTSGLVSN 347

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L Q+  +   +    IER+++RL+  + ++V RK   +   LPGKLADC Q
Sbjct: 348 VIKDAFAIWLNQHRNQGEAIAALAIERAQKRLK--QAKQVARKRVSQGPALPGKLADCLQ 405

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 ELF+VEGDSAGGSAKQARN+  QA+LPLRGKILN     S ++  +Q+I D+  
Sbjct: 406 TDLSQAELFLVEGDSAGGSAKQARNKDYQAILPLRGKILNSWEVDSSQVLASQEIHDISV 465

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+G    S    E LRY K+ I+ DAD DGAHIA+L+   F +    L++  H+F+  PP
Sbjct: 466 AIGVDPGSSDL-EGLRYGKICILADADSDGAHIATLICALFLRHFKPLVKAGHVFVAMPP 524

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+RI  G    YA D+E K +I++   +  K K+ + RFKGLGEM   QL+ET MD N R
Sbjct: 525 LYRIDAGKLIHYALDDEEKNRIVQHLSQTTKSKVNVQRFKGLGEMNPIQLRETTMDPNTR 584

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            L+++ ++ +  +       +NK    +A +R  +++ + +  +
Sbjct: 585 RLVQLTLDDEEQTEAIMDMMLNK---KRAADRKLWLETKGNLAE 625


>gi|109896764|ref|YP_660019.1| DNA topoisomerase IV subunit B [Pseudoalteromonas atlantica T6c]
 gi|109699045|gb|ABG38965.1| DNA topoisomerase IV subunit B [Pseudoalteromonas atlantica T6c]
          Length = 629

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 245/645 (37%), Positives = 351/645 (54%), Gaps = 21/645 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S+ Y+A +I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE + G+A+ I+V 
Sbjct: 2   SNQYNADAIEVLNGLDPVKRRPGMY---TDTTRPNHLSQEVIDNSVDEALGGFASSIKVV 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V D+GRG+PV+ H +    S +E+I+T LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHPDQSLEVTDDGRGMPVDIHAE-EGISGVELIMTKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V++ R  +++   F  G  +  L+  +   +   GTR+ F PD + + D 
Sbjct: 118 VVNALSKRVEVSIRRDGSVYQIAFENGEKVEDLKVVDTCGKRNSGTRVHFWPD-EQYFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
           A F   +LL + ++KA L   ++  +             E  E+YF  GLK YL   + +
Sbjct: 177 AKFSVTKLLHVLRAKAVLCPGLRIRFDDK-------VSKETHEWYFEDGLKDYLYQSVGD 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
              + ++          T                   SY N I T +GGTH +GLR  L 
Sbjct: 230 SISLPADAPFVGAVSGNTEAVDWAVIWLPEGGEMITESYVNLIPTAQGGTHVNGLRQGLL 289

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R I +  +D+      +LS  +++P+FAGQ K +L S  A   V  
Sbjct: 290 ESMREFCEFRNLLPRGIKLTPEDIWDRCSYVLSTKMQDPQFAGQIKERLSSRQAAAFVSG 349

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L Q+   A +L E  I  ++ RLR  + ++V RK   +   LPGKL DCS 
Sbjct: 350 IVKDAFSLWLNQHTAIAEQLAEMCISNAQTRLR--QSKKVARKKVTQGPALPGKLTDCST 407

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +ELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     S ++  +Q+I D+  
Sbjct: 408 QDTGRSELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNSWEVDSSQVLASQEIHDISV 467

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG    S      LRY KV I+ DAD DG HIA+LL   F +    L+E  H ++  PP
Sbjct: 468 ALGIDPDSDDL-SGLRYNKVCILADADSDGLHIATLLCALFVKHFRTLVENGHAYVAMPP 526

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANK 637
           LFRI  G +  YA DE  KQ IL+      K GK+ + RFKGLGEM   QL+ET MD N 
Sbjct: 527 LFRIDVGKEVFYALDEGEKQGILDRIAAEKKRGKVNVQRFKGLGEMNPLQLRETTMDPNT 586

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           R L+++ I      L+        L   +A +R  +++ + +  D
Sbjct: 587 RRLVQLTIEDPTEMLETMDML---LAKKRAGDRKSWLESKGNMAD 628


>gi|294139238|ref|YP_003555216.1| DNA topoisomerase IV subunit B [Shewanella violacea DSS12]
 gi|293325707|dbj|BAJ00438.1| DNA topoisomerase IV, B subunit [Shewanella violacea DSS12]
          Length = 628

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 251/647 (38%), Positives = 364/647 (56%), Gaps = 26/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y + SI +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AG+A  IE++
Sbjct: 2   TNQYTSDSIEVLNGLDPVKRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHATKIEIT 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+    S +E+ILT LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHKDNSLEVIDDGRGMPVDIHPE-EGISGVELILTKLHAGGKFSNDNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + +TV R   ++   F  G  +  L +     R   GTR+ F P P  F   
Sbjct: 118 VVNALSSRVEITVRRSGIVYDIAFENGDMVEELRETGTCGRRNTGTRVHFWPIPSYFDSA 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F   +L  + ++KA L   +K  ++            E +E+++  GL  YLQ+  ++
Sbjct: 178 N-FSVPKLTYLLKAKAVLCPGLKIKFTNK-------QTDEVQEWFYESGLTDYLQSSTKD 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVA 337
             ++  E F G  +        V+WAI W  E  E    SY N I T  GGTH +G R  
Sbjct: 230 AIMLPEEPFIGSLKGNNE---AVDWAITWLPEGGEYLNESYVNLIPTPLGGTHVNGFRQG 286

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R I +  +D+   +  ILS+ + +P+F+GQTK KL S  +   V
Sbjct: 287 LLESMREFCEFRNLMPRGIKLTPEDIWDRSSFILSIKLLDPQFSGQTKEKLSSRQSSAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              +RD F  +L  N  +A  L E  I  + +RL+    ++V RK       LPGKL DC
Sbjct: 347 SGIVRDSFSLWLNTNTEQALALAEMCINNAHKRLK--SAKKVARKKVTSGPALPGKLTDC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S       ELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     S ++  +Q++ D+
Sbjct: 405 SGQDPMRGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDSSQVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+GC   S     +LRY K+ I+ DAD DG HIA+LL   F +    L+E+ H+++  
Sbjct: 465 SVAIGCDPDSSDI-SELRYGKICILADADSDGLHIATLLCALFMKHYKILVEKGHIYVAM 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
           PPLFRI  G +  YA DE  KQ IL+    +  KGK++++RFKGLGEM   QL+ET MD 
Sbjct: 524 PPLFRIDIGKEIFYALDEAEKQGILDRIAAEKKKGKVQVTRFKGLGEMNPLQLRETTMDP 583

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           N R L+++ I+    ++         L   ++ +R  +++ + +  D
Sbjct: 584 NTRRLVQLTIDDVEETISMMDML---LAKKRSGDRKIWLESKGNLAD 627


>gi|284008571|emb|CBA75135.1| DNA topoisomerase IV subunit B [Arsenophonus nasoniae]
          Length = 631

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 254/646 (39%), Positives = 367/646 (56%), Gaps = 26/646 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AGYA  I+V L
Sbjct: 4   SNYNAEAIEVLSGLEPVRRRPGMY---TDTSRPNHLAQEVIDNSVDEALAGYAKRIDVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGISV
Sbjct: 61  YEDQSLEVIDDGRGMPVDIHPE-KKVPAVELILGQLHAGGKFSNKNYQFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + VTV+R + I+   F  G  +  LE      +   GT + F PD   F D  
Sbjct: 120 VNALSKRIEVTVSRDSQIYRIAFENGEKVQELEVIGSCAKRTTGTGVRFWPD-SHFFDNP 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL+ + ++KA L   V+  +       E       + + +  GL  YL   +   
Sbjct: 179 RFSISRLVHVLKAKAVLCPGVEIIFKDKINNTE-------QTWRYNDGLTDYLMEAVNGL 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +  + F G    +      V+WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 VTLPEKAFVGNFAGQLEM---VDWALLWLPEGGELLTESYVNLIPTAQGGTHVNGLRQGL 288

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E      R + +  DD+      +LSV +++P+FAGQTK +L S  +   V 
Sbjct: 289 LDAMREFCEYRNLLPRGVKLTGDDIWERCAYVLSVKMQDPQFAGQTKERLSSRQSAAFVS 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             ++D F  +L QN  EA +L E  I  ++ RLR    ++V RK       LPGKLADC+
Sbjct: 349 GVVKDAFSLWLNQNVQEAEQLAELTISSAQRRLR--AAKKVVRKKLTSGPALPGKLADCT 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
               + TELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     S+++  +Q++ D+ 
Sbjct: 407 SQDLNFTELFLVEGDSAGGSAKQARDREYQAIMPLRGKILNTWEVSSDEVLASQEVHDIS 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S      LRY K+ ++ DAD DG HIA+LL   F +    L++  H+++  P
Sbjct: 467 VAIGIDPDSNDL-SQLRYGKICVLADADSDGLHIATLLCALFVRHFPTLVKAGHIYIAMP 525

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G +  YA DE  K  +L+    + +GK  + RFKGLGEM  +QL+ET +D N 
Sbjct: 526 PLYRIDLGKEVYYALDEGEKAAVLDRLS-YKRGKPNVQRFKGLGEMNPTQLRETTLDPNT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++ IN D  + ++T   ++ L+  K A++R  ++Q +   I+
Sbjct: 585 RRLVQLIINDD--NYQETLAMMDMLLAKKRAEDRRNWLQNKGDAIE 628


>gi|297191607|ref|ZP_06909005.1| DNA topoisomerase IV subunit B [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197719347|gb|EDY63255.1| DNA topoisomerase IV subunit B [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 708

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 238/706 (33%), Positives = 346/706 (49%), Gaps = 52/706 (7%)

Query: 24  KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVID 83
                +P +          NY A  + +LEGLE VR RPGMYIG TD + L H   E+ID
Sbjct: 2   TAESSVPSTALLTADRDGSNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLLHCLWEIID 61

Query: 84  NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143
           N++DE + G+ + IEV L  +G + V DNGRGIPV+  PK    S +E+++T LHAGGKF
Sbjct: 62  NSVDEALGGHCDHIEVILHEDGSVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHAGGKF 120

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV---- 199
              +Y  SGGLHGVG SVVNALS  L V V R        F RG+P    E         
Sbjct: 121 GGGSYAASGGLHGVGASVVNALSARLDVEVDRGGATHMISFRRGVPGIFTESGPDAPFDP 180

Query: 200 -----------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
                      + + GTR+ +  D +IF   A      L +  +  A+L   +      +
Sbjct: 181 ANGLRKGKRVPKARTGTRVRYWADRQIFLKDAKLSLETLHQRARQTAFLVPGLTIVVHDE 240

Query: 249 KEIAEKYGIPE-KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-------------- 293
           + + E  G  +  E F F GG+  + +   +++ +      TG+                
Sbjct: 241 RGLTEAGGEGKSVETFRFDGGISEFCEYLAQDKPVCDVLRLTGQGTFKETVPVLDDRGHM 300

Query: 294 --KKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
              + T    V+ A+ W         S+ N I T +GGTH +G   ++T+ + +     +
Sbjct: 301 TPTEVTRELGVDIALRWGTGYDTNLKSFVNIIATPKGGTHVTGFERSVTKTMNEVLRSAK 360

Query: 351 NKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
             R        DD +     +++V + EP+F GQTK  L +  A R V N +      +L
Sbjct: 361 MLRVAEDDIVKDDALEGLTAVVTVRLAEPQFEGQTKEVLGTSAANRIVANVVAKELKAFL 420

Query: 409 VQNPIEATKLLEWVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHG 463
                +A      V+E+           R+ +    RKTA+    LP KLADC  +    
Sbjct: 421 TSTKRDAKAQARAVLEKAVAAARTRIAARQHKEAQRRKTALESSSLPAKLADCRSDDVER 480

Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523
           +ELFIVEGDSA G+AK ARN   QA+LP+RGKILNV  +    +  N +   ++Q +G  
Sbjct: 481 SELFIVEGDSALGTAKLARNSEFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVIGAG 540

Query: 524 TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI- 582
           +   +  +  RY K++++ DADVDGAHI  LLLT F + M  ++E   +F   PPL RI 
Sbjct: 541 SGRTFDIDAARYGKIVLLVDADVDGAHIRCLLLTLFQRYMRPMVEAGRVFAAVPPLHRIE 600

Query: 583 ----TQGT-KSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDAN 636
                +G  K VY + +   ++ L EF++ G + K  I R+KGLGEM A QL ET MD  
Sbjct: 601 LIQPKKGQDKYVYTYSDNELRQTLLEFQRKGVRFKDSIQRYKGLGEMDADQLAETTMDPR 660

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            RTL R+ I      L+ ++   + LMG +   R +FI   A+ +D
Sbjct: 661 HRTLRRINIGD----LESSEQIFDLLMGNEVAPRKEFITSSAATLD 702


>gi|152978653|ref|YP_001344282.1| DNA topoisomerase IV subunit B [Actinobacillus succinogenes 130Z]
 gi|150840376|gb|ABR74347.1| DNA topoisomerase IV, B subunit [Actinobacillus succinogenes 130Z]
          Length = 641

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 254/654 (38%), Positives = 367/654 (56%), Gaps = 32/654 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           ++YD+ +I +L+GLEPV++RPGMY   TD    +HL  EVIDN++DE +AG+A+ IEV L
Sbjct: 4   NDYDSINITVLKGLEPVQIRPGMY---TDTTRPNHLGQEVIDNSVDEALAGFASKIEVVL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V DNGRG+PV+ HP     S +E+I+T LHAGGKF N+ YE +GGLHGVG+SV
Sbjct: 61  HSDQSLEVTDNGRGMPVDIHP-TEKISGVEVIMTKLHAGGKFSNANYEFAGGLHGVGVSV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS+ + VTV R   ++   F+ G  +  LE      R   GT + F+P+PK F    
Sbjct: 120 VNALSERVDVTVRRGGQVYHIAFADGEKVEELEVVGTCGRRNTGTSLHFKPNPKYFDSD- 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L   ++  ++      E       E + +  GL  YL       
Sbjct: 179 KFSVSRLRHLLRAKAVLCSGLEIKFTDQVNNTE-------ESWCYQDGLSDYLSETAAEF 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +    F G+ +  G     VEWA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 VTVPETPFVGEFKGSGE---AVEWALFWLPEGGELTTESYVNLIPTIQGGTHVNGLRKGL 288

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              + ++ E      + + + +DDL      +LS+ + + +FAGQTK +L S ++   V 
Sbjct: 289 IDAMAEFCEFHNLLPKGVKLTADDLWDRCAYVLSLKMHDAQFAGQTKERLSSRESAVFVG 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             ++D F  +L  N   A  L E  I  ++ RLR    ++V RK       LPGKLADCS
Sbjct: 349 GVVKDAFSLWLNNNMEPAKLLAEMTINSAQRRLR--AAKKVVRKKLTSGPALPGKLADCS 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           Q     TELF+VEGDSAGGSAKQAR+R  QA+LPLRGKILN     SE++  ++++ ++ 
Sbjct: 407 QQDLERTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSSEQVLGSEEVHNIA 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG    S      LRY KV I+ DAD DG HIA+LL   F +    L+E  H+++  P
Sbjct: 467 VALGIDPDSDDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVEDGHVYVAMP 525

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G +  YA DE  K  +L+      +GK  + RFKGLGEM  SQL+ET M+ + 
Sbjct: 526 PLYRIDLGKEVYYALDENEKDAVLDRLSGK-RGKPNVQRFKGLGEMNPSQLRETTMEPST 584

Query: 638 RTLLRVEINKDLNSLK--------DTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++   + + +          +T + ++ L+  K A++R  ++Q +    D
Sbjct: 585 RRLVQLTYEEPIATESAVKNSQQNETIELMDMLLNKKRAEDRKNWLQTKGDQAD 638


>gi|119717182|ref|YP_924147.1| DNA topoisomerase IV subunit B [Nocardioides sp. JS614]
 gi|119537843|gb|ABL82460.1| DNA topoisomerase IV subunit B [Nocardioides sp. JS614]
          Length = 710

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 229/708 (32%), Positives = 346/708 (48%), Gaps = 57/708 (8%)

Query: 22  KLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEV 81
             +++     +    + +  + Y+A+ + +LEGLE VR RPGMYIG TD + L H   E+
Sbjct: 7   AARRTDRHDRTGTTRSPTIDNTYNAAHLLVLEGLEAVRKRPGMYIGSTDTRGLMHCLWEI 66

Query: 82  IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141
           IDN +DE + G+A+ +EV+L  +G   V D+GRGIP +  PK      +E++ T LHAGG
Sbjct: 67  IDNGVDEALGGHASHVEVTLHPDGSAEVYDDGRGIPTDKEPK-TGLPGVEVVATKLHAGG 125

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--------- 192
           KF   +Y  +GGLHGVG+SVVNAL+  + + V R        F RG+P            
Sbjct: 126 KFGGGSYVATGGLHGVGLSVVNALATRMDIDVDRSPARQGISFRRGVPGVFSGDGPQADF 185

Query: 193 -------LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
                   +     + + GTRI F PD +IF   A F    L+   +  +++   ++   
Sbjct: 186 EARSGLTRKGSRVAKGRSGTRIVFWPDRQIFTKDAQFVYEDLVARARQTSFIVPGLELVI 245

Query: 246 SCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGK-------------- 291
              +        P +E+F   GG+  +      +  +       G               
Sbjct: 246 RDLRGPD-----PVEEKFRHDGGIAEFADFLAPDEPVTDILRLQGTDTFTETVPLLDEKG 300

Query: 292 --TEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
             T ++      V+ A+ W      +  S+ N I T +GGTH SG   A+TR   +  + 
Sbjct: 301 QMTPQEVERELQVDVALRWGTGYDTVLRSFVNVIATPKGGTHVSGFEQAVTRTFNEVMKS 360

Query: 349 TQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
            +  +     +I DD++     +++V + EP+F GQTK  L +  A+  V   +      
Sbjct: 361 AKVLKVNDDDVIKDDVLEGMTCVVTVRLSEPQFEGQTKEILGTPAARTVVRRVVSAELKK 420

Query: 407 YLVQNPIEATKLLEWVIE----RSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIA 461
           +L           + V+E     ++ R+  R+ +E   RK A+    LP KLADC     
Sbjct: 421 FLTSTKRAEKAQAKLVMEKVAGAAKTRITARQHKETQRRKNALESSALPSKLADCRAADN 480

Query: 462 HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
             TELFIVEGDSA G+AK ARN   QA+LP+RGKILNV  A    +  N +   ++Q +G
Sbjct: 481 DRTELFIVEGDSALGTAKLARNSEFQALLPIRGKILNVQKASVGDMLKNAECASIIQVVG 540

Query: 522 CRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581
             +   +  +  RY ++I M DAD DGAHI  LL T FY+ M +LI++  ++   PPL R
Sbjct: 541 AGSGRTFDLDARRYGRIIFMADADSDGAHIRCLLATLFYKYMPELIQEGRVYTAVPPLHR 600

Query: 582 I-----TQG-TKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMD 634
           +      +G  K VY + ++  Q+ L E KK G + K  + R+KGLGEM A QL ET MD
Sbjct: 601 VEISNPKKGMEKYVYTYSDDELQRKLAELKKKGVRWKDPVQRYKGLGEMDADQLAETTMD 660

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
              RTL R+ I+    +          LMG+    R +FI + A  +D
Sbjct: 661 PRHRTLRRITIDNAEEAAG----VFELLMGSDVAPRKEFIVQGAYEVD 704


>gi|52840928|ref|YP_094727.1| DNA topoisomerase IV subunit B [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52628039|gb|AAU26780.1| DNA topoisomerase IV subunit B [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 626

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 246/644 (38%), Positives = 356/644 (55%), Gaps = 22/644 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S+NY A +I +L GLEPV+ RPGMY   TD    +HL  EVIDN++DEV+AG+A+ I V+
Sbjct: 2   SENYTAEAIEVLSGLEPVQRRPGMY---TDTTRPNHLAQEVIDNSVDEVLAGFASRIIVT 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +G + V D+GRG+PV+ HP+    S +E+I+T LHAGGKF +  Y  SGGLHGVG+S
Sbjct: 59  LHEDGSIEVEDDGRGMPVDLHPQL-GLSGVEVIMTRLHAGGKFSDKNYSFSGGLHGVGVS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPDPKIFGDK 219
           VVNALS+ L VT+ R   I+   F+ G  L  L +    + +  GT I F P+ K F   
Sbjct: 118 VVNALSERLDVTIKRNGIIYQMTFANGDKLCELNETGVTKKRETGTVIRFWPNGKYFDTT 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
                  L  + ++KA L   +   +       E         +Y+  GL  YL   L  
Sbjct: 178 -KISVKHLTHVLRAKAVLCSGLSMTFINKITNEE-------MNWYYEQGLTDYLLQTLP- 228

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
                 E       K          A +         SY N I T +GGTH +GLR  L 
Sbjct: 229 -EDYLPEEPFAGAFKSDEATVDWALAWSDSANGNLNESYVNLIPTIQGGTHVNGLRSGLF 287

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             + ++ +L     R + + +DDL  S   +LS+ ++EP+FAGQTK +L S      V N
Sbjct: 288 EAMSEFCDLRNLLPRGVKLTADDLWESCQYVLSIKMKEPQFAGQTKERLSSRQTSGLVSN 347

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L Q+  +   +    IER+++RL+  + ++V RK   +   LPGKLADC Q
Sbjct: 348 VIKDAFAIWLNQHRNQGEAIAALAIERAQKRLK--QAKQVARKRVSQGPALPGKLADCLQ 405

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 ELF+VEGDSAGGSAKQARN+  QA+LPLRGKILN     S ++  +Q+I D+  
Sbjct: 406 TDLSQAELFLVEGDSAGGSAKQARNKDYQAILPLRGKILNSWEVDSSQVLASQEIHDISV 465

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+G    S    E LRY K+ I+ DAD DGAHIA+L+   F +    L++  H+F+  PP
Sbjct: 466 AIGVDPGSSDL-EGLRYGKICILADADSDGAHIATLICALFLRHFKPLVKAGHVFVAMPP 524

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+RI  G    YA D+E K +I++   +  K K+ + RFKGLGEM   QL+ET MD N R
Sbjct: 525 LYRIDAGKLIHYALDDEEKNRIVQHLSQTTKSKVNVQRFKGLGEMNPIQLRETTMDPNTR 584

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            L+++ ++ +  +       +NK    +A +R  +++ + +  +
Sbjct: 585 RLVQLTLDDEEQTEAIMDMMLNK---KRAADRKLWLETKGNLAE 625


>gi|47459221|ref|YP_016083.1| topoisomerase IB subunit B [Mycoplasma mobile 163K]
 gi|47458550|gb|AAT27872.1| topoisomerase IB subunit B [Mycoplasma mobile 163K]
          Length = 638

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 234/648 (36%), Positives = 351/648 (54%), Gaps = 32/648 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NYD+ SI+  + LE V+ RPGMYIG TD K LHHL  E++DN++DE IA +AN I+V+L 
Sbjct: 4   NYDSKSIKSYKDLEAVKKRPGMYIGSTDAKGLHHLVWEIVDNSIDEAIANFANKIQVTLT 63

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G + V DNGRGIPV+       K+T+E + T LH GGKF +  Y+ SGGLHGVG SVV
Sbjct: 64  KDGSVIVEDNGRGIPVDKF--SDQKTTVEAVFTELHTGGKFGDGAYKTSGGLHGVGSSVV 121

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS +L  TV R   I+   F  G  +S   K      KRGT+I F PD  I   +A  
Sbjct: 122 NALSIKLIATVYRDKKIYETIFENGGEISQSTKIIGSTTKRGTKIEFWPDY-IIFKRAKL 180

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               + +  +  ++L   ++     +          +KE F +  G+  ++      +  
Sbjct: 181 SYEIISERLRESSFLIQNLEIVLVDE-------NTNQKETFKYENGIVEFVDFINSGKDA 233

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           I+S+       KK      VE AI + +     I S+ N I T +GG+HE+G++ ALT+ 
Sbjct: 234 INSKTIYINDTKKDI---NVEIAIQYTDSYNETIVSFVNNIKTRDGGSHENGVKTALTKV 290

Query: 342 IKKYAELTQNKRAISII--SDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397
             +Y +     +  +     +D+      ++S+ I E   EF GQTK KL + +A+   E
Sbjct: 291 FNEYVKDKNLLKGKNNSFEGNDIREGITIVISLRIPENILEFVGQTKDKLGTQEAKSITE 350

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA---IRKLRLPGKLA 454
           + L +    +L +N  +A K++  + +  + R+  +  R+ +R+T      +  L GKL+
Sbjct: 351 DILSNSLWIWLNENKEDALKIINKIKKSQDSRIAAKNARKESRETKNSLKEQKILSGKLS 410

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
                 A   ELF+VEGDSAGGSAK  RN   QA+LPL+GK++N        +  N++I 
Sbjct: 411 PARSKKASEKELFLVEGDSAGGSAKLGRNSQFQAILPLKGKVINCEKTKLIDVLKNEEIS 470

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++  +G    + +  +   Y KV+IMTDADVDG+HI  LLLTF Y+ M  LIE   +++
Sbjct: 471 TIINTIGAGIGADFDLKKANYHKVVIMTDADVDGSHIQVLLLTFLYRYMKPLIEAGMVYI 530

Query: 575 ISPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
             PPLF+IT     K  Y  DE+    ++++     +   EI R+KGLGEM   QL ETA
Sbjct: 531 ALPPLFKITNKKTKKFKYVLDEDELNNLMKK-----ENDFEIQRYKGLGEMNPDQLWETA 585

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           M+   RTL++VEI   L     T+  ++ LMG + + R ++I +   F
Sbjct: 586 MNPETRTLIKVEIEDAL----ITERRVSTLMGDQIELRKEWINKNVVF 629


>gi|78484709|ref|YP_390634.1| DNA topoisomerase IV subunit B [Thiomicrospira crunogena XCL-2]
 gi|78362995|gb|ABB40960.1| DNA topoisomerase IV subunit B [Thiomicrospira crunogena XCL-2]
          Length = 628

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 241/646 (37%), Positives = 363/646 (56%), Gaps = 25/646 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S+NY+AS I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE IAG+A+ I V+
Sbjct: 2   SENYNASEIEVLTGLDPVRKRPGMY---TDTTRPNHLAQEVIDNSVDEAIAGHASKIIVT 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
              +G + V D+GRG+PV+ HP+      +E+ILT LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  HFADGSIAVEDDGRGMPVDIHPEQ-GMPGVEVILTKLHAGGKFSNKAYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + + + R   +    F +G+ + PLE   KV +   GT + F PD   F D 
Sbjct: 118 VVNALSKRVEIQIKRDGKVHQIAFEQGLVVEPLEVIGKVGKKNTGTTLRFWPDA-RFFDT 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             +   +L  + ++KA LS  +   +  +          E  E+ +  GL+ YL   L+ 
Sbjct: 177 PKYALTKLKHLLRAKAVLSPGLHVTFIDE-------VSNETSEWQYEDGLRDYLNQALDG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
              +  E F G+T  +         A      +  + SY N I T  GGTH +GLR   T
Sbjct: 230 VDRVPVEGFVGETNGENE-GVAWAIAWLAEPADTVLESYVNLIPTPLGGTHVNGLRAGAT 288

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             I+++ E      R + +  +D+  +   +LS  +REP+FAGQTK +L S +    +  
Sbjct: 289 DAIREFCEFRNLLPRGVKVTPEDVWQNVAFVLSAKVREPQFAGQTKERLSSRECVPFISG 348

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D    +L Q+   A K+ E VI  +  R ++ K  ++ RK       LPGKLADC++
Sbjct: 349 VVKDSLSLWLNQHTDVAEKIAEIVINNAHNRNKKAK--KITRKKITSGPALPGKLADCTE 406

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
           +  + TELF+VEGDSAGGSAKQAR+++ QA++PLRGKILN     S ++  + +I D+  
Sbjct: 407 SDLNRTELFLVEGDSAGGSAKQARDKNFQAIMPLRGKILNTWEVDSSQVLASSEIHDISV 466

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+G    S      LRY K+ I+ DAD DGAHIA+L+   F +    L+E  H+++  PP
Sbjct: 467 AIGVDPGSDDL-SGLRYGKICILADADSDGAHIATLICALFVKHFPKLVENGHVYVAMPP 525

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANK 637
           L+RI  G +  YA DE  +  +L+  +     GK++++RFKGLGEM   QL+ET M    
Sbjct: 526 LYRIDVGKQLFYALDESERAGVLDRIESEKMPGKVQVTRFKGLGEMNPKQLRETTMMPET 585

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++ +      ++     ++KL+  K + +R  +++E+    +
Sbjct: 586 RRLIQLGL-----DIESADPMMDKLLAKKRSGDRKIWLEEKGDLAE 626


>gi|303252116|ref|ZP_07338285.1| DNA topoisomerase IV subunit B [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307248277|ref|ZP_07530303.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302649098|gb|EFL79285.1| DNA topoisomerase IV subunit B [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306855211|gb|EFM87388.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 637

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 251/650 (38%), Positives = 370/650 (56%), Gaps = 28/650 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y A  I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE ++GYA+ I+V L
Sbjct: 4   KRYGADEITVLKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALSGYASQIDVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V+DNGRG+PV+ H      S +E+I+T LHAGGKF N  Y  SGGLHGVGISV
Sbjct: 61  HTDNSLEVIDNGRGMPVDIHS-TEKISGVELIMTKLHAGGKFSNKNYTFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + + + R   I++  F  G+ +  L       + + GT + F P+PK F    
Sbjct: 120 VNALSQRVEIKIKRNGEIYTIAFENGVKVEELTVIGSCPKKQTGTTVRFYPNPKYFDSPR 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L  ++   +         +     E +Y+  GL  YL   L+  
Sbjct: 180 -FSVSRLRHLLRAKAVLCPKLTLNFVD-------HINNSSETWYYEDGLSDYLSEALKEF 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             + +  F G    +      V WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 ECLPNPPFIGDVTSETE---AVSWALTWLPEGGELVAESYVNLIPTAQGGTHVNGLRNGL 288

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
            + + ++ E+     +++ + +DD+      +LS+ I+EP+FAGQTK +L S  A   V+
Sbjct: 289 LKAMVEFCEIHNLLPKSVKLTTDDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVD 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
           + ++D F  +L QN      + E  I  ++ RLR    ++V RK  +    LPGKLADC+
Sbjct: 349 STIKDAFSLWLNQNVQTGKLIAEMAISSAQSRLR--AAKKVVRKKLVSGPALPGKLADCT 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN     S+++  +Q++ D+ 
Sbjct: 407 SQDLSRTELFLVEGDSAGGSAKQARDKDYQAILPLRGKILNTWEVSSDQVLASQEVHDIA 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG    S    E+LRY KV I+ DAD DG HIA+LL   F +   +L++  H+++  P
Sbjct: 467 VALGIDPDSDSL-EELRYGKVCILADADSDGLHIATLLCALFLRHFPNLVKNGHVYVAMP 525

Query: 578 PLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PL+RI  G  +  YA DE  K+ IL    K  KGK  + RFKGLGEM  SQL+ET MD +
Sbjct: 526 PLYRIDIGKDEVHYALDEAEKEAILARLAKK-KGKPNVQRFKGLGEMNPSQLRETTMDPS 584

Query: 637 KRTLLRVEINK---DLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ +++      +  +T + ++ L+  K A++R +++Q R    +
Sbjct: 585 TRRLVQLTLDELDVAEENEPNTFEIMDMLLAKKRAEDRKQWLQNRGDEAE 634


>gi|313238122|emb|CBY13220.1| unnamed protein product [Oikopleura dioica]
          Length = 613

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 235/640 (36%), Positives = 352/640 (55%), Gaps = 46/640 (7%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIG  DE+ LHH   EV+DN++DE +AGY + I+V++  +G +++ DNGRGIPV+ HPK
Sbjct: 1   MYIGDPDERGLHHCVFEVLDNSIDEHLAGYCSRIKVAIHVDGSVSISDNGRGIPVDMHPK 60

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
           F     +E++LT LHAGGKF    Y+ SGGLHGVG   VNAL+D     + R   +    
Sbjct: 61  F-GIPAVELVLTNLHAGGKFGQGAYKYSGGLHGVGAKCVNALADWFRADIMRNGKVHRIA 119

Query: 184 FSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
           F RG     L    +V  NK GT ITF PD  IF D   F   RL    +  A+L+  + 
Sbjct: 120 FERGKTTEQLHVVGEVDPNKTGTTITFFPDATIFVDTIEFKFDRLATRLRELAFLNPGLI 179

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE--------- 293
                ++         +K  FY+  G++ ++    EN+++I  +      +         
Sbjct: 180 IDLEDER-----PESAKKASFYYAKGIEEFVVQLGENKTVIHDDPVVLNGKRQIELDYDG 234

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350
           K+ T     +    + +    +I  + N+I   +GGTH +G R ALTRGI +YA++ +  
Sbjct: 235 KQTTDDVFADVVFQYNDSYNDQILCFANSIPNGDGGTHLTGFRTALTRGINQYAKVNKIL 294

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
             +  ++  DD+    V ++SV +  P F+ QTK KLV+ + +  V + + +    Y  +
Sbjct: 295 KDKDPALSGDDVREGLVCVISVKMPNPRFSSQTKDKLVNTEIEGVVSSIVYEGIMQYFDE 354

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           NP  A K++E  +  +  R   RK RE  RK+A+    LPGKLADCS+     +EL+IVE
Sbjct: 355 NPALARKVIEKSVNAARAREAARKARETVRKSALSGGGLPGKLADCSERDPAKSELYIVE 414

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS---- 526
           GDSAGGSAKQ R+R  QA+LPLRGK++NV  A   +   N++I +L+ A+G         
Sbjct: 415 GDSAGGSAKQGRDRRTQAILPLRGKLINVEKARLHRALQNKEIQNLITAIGAGIGDGEQE 474

Query: 527 -QYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG 585
             +  + +RY KV+IMTDADVDG+HI +LLLTFF + M +L+++  L++  PPL+ +T+ 
Sbjct: 475 GSFNIDKVRYHKVVIMTDADVDGSHIRTLLLTFFCRHMPELVKRGFLYIAQPPLYLVTR- 533

Query: 586 TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645
                   E  KQ             ++I RFKGLGEM A QL ET MD   R  LRV +
Sbjct: 534 --------EGEKQ-----------HGVQIKRFKGLGEMNAKQLFETTMDPETRQFLRVRL 574

Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           ++D  +  +     + LMG   + R +FI++ A  + ++ 
Sbjct: 575 DED--NAVEADKMFDVLMGDIVEPRKRFIEDNALNVRNLD 612


>gi|297202866|ref|ZP_06920263.1| DNA gyrase, B subunit [Streptomyces sviceus ATCC 29083]
 gi|197715205|gb|EDY59239.1| DNA gyrase, B subunit [Streptomyces sviceus ATCC 29083]
          Length = 707

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 238/706 (33%), Positives = 345/706 (48%), Gaps = 52/706 (7%)

Query: 23  LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82
             ++     +          NY A  + +LEGLE VR RPGMYIG TD + L H   E+I
Sbjct: 2   TAETSVPSTALLAGADRDGSNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEII 61

Query: 83  DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142
           DN++DE + GY + IEV L  +  + V DNGRGIPV+  PK    S +E+++T LHAGGK
Sbjct: 62  DNSVDEALGGYCDHIEVILHDDASVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHAGGK 120

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN- 201
           F   +Y  SGGLHGVG SVVNALS  L V V R     +  F RG+P +        +  
Sbjct: 121 FGGGSYAASGGLHGVGASVVNALSARLDVEVDRAGNTHAISFRRGVPGAFAANGPDAKFD 180

Query: 202 --------------KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247
                         + GTR+ +  D +IF   A      L +  +  A+L   +      
Sbjct: 181 AASGLRKTKRIPKTRTGTRVRYWADRQIFLKDAKLSLDNLHQRARQTAFLVPGLTIVVRD 240

Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-------------- 293
           +  + E     E E F F GG+  + +    ++ +     F+G+                
Sbjct: 241 EYGLGEGGSKGE-ESFRFDGGISEFCEYLASDKPVNDVLRFSGQGSFKETVPVLDDHGQM 299

Query: 294 --KKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
              + T    V+ A+ W         S+ N I T +GGTH +G   A+T+ + +     +
Sbjct: 300 TPTEVTRELGVDVAMRWGTGYDTTLRSFVNIIATPKGGTHVAGFEQAVTKTMNEVLRAKK 359

Query: 351 NKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
             R        DD +     +++V + EP+F GQTK  L +  A+R V   +      +L
Sbjct: 360 MLRVAEDDIVKDDALEGLTAVVTVRLAEPQFEGQTKEVLGTSAARRIVNTVISKELKAFL 419

Query: 409 VQNPIEATKLLEWVIE----RSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHG 463
                +A      V+E     +  R+  R+ ++   RKTA+    LP KLADC  +    
Sbjct: 420 TSTKRDAAAQARVVMEKAVSAARTRIAARQHKDAQRRKTALETSSLPAKLADCRSDDVDR 479

Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523
           +ELFIVEGDSA G+AK ARN   QA+LP+RGKILNV  +    +  N +   ++Q +G  
Sbjct: 480 SELFIVEGDSALGTAKLARNSEFQALLPIRGKILNVQKSSVTDMLKNVECGAIIQVIGAG 539

Query: 524 TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI- 582
           +   +  +  RY K+I+MTDADVDG+HI  LLLT F + M  ++E   +F   PPL RI 
Sbjct: 540 SGRTFDIDAARYGKIIMMTDADVDGSHIRCLLLTLFQRYMRPMVEAGRVFAAVPPLHRIE 599

Query: 583 ----TQGT-KSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDAN 636
                +G  K VY + +   ++ L EF+  G + K  I R+KGLGEM A QL ET MD  
Sbjct: 600 LVQPKKGQDKYVYTYSDRELREKLLEFQSKGVRYKDSIQRYKGLGEMDADQLAETTMDPR 659

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            RTL R+ +      L+  +   + LMG     R +FI   A+ +D
Sbjct: 660 HRTLRRINL----ADLEAAEQVFDLLMGNDVAPRKEFISGSAATLD 701


>gi|127511483|ref|YP_001092680.1| DNA topoisomerase IV subunit B [Shewanella loihica PV-4]
 gi|126636778|gb|ABO22421.1| DNA topoisomerase IV subunit B [Shewanella loihica PV-4]
          Length = 628

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 244/646 (37%), Positives = 360/646 (55%), Gaps = 26/646 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y + +I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AG+A  I+V 
Sbjct: 2   TNQYTSDAIEVLNGLDPVKRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHATRIDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+ILT LHAGGKF N+ Y+ SGGLHGVGIS
Sbjct: 59  LHKDNSLEVIDDGRGMPVDIHPE-EGIPGVELILTKLHAGGKFSNNNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS+ + +TV R   ++   F  G  +  L       R   GTR+ F P    F   
Sbjct: 118 VVNALSNRVEITVRRSGQVYEMAFEHGDKVEELTVTGTCGRRNTGTRVHFWPTASYFDSV 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F   +L+ + ++KA L   ++  ++            + EE+ +  GL  YL++  + 
Sbjct: 178 N-FSIPKLIYLLRAKAVLCPGLRIKFTNK-------QTGDVEEWCYESGLTDYLKSSTQG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  E F G           V+WAI W  E  +    SY N I T  GGTH +G R  
Sbjct: 230 ALTLPEEPFIGSMAGNTE---AVDWAITWLPEGGDSLNESYVNLIPTPLGGTHVNGFRQG 286

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R I +  +D+   +  ILS+ +++P+FAGQTK KL S  +   V
Sbjct: 287 LLEAMREFCEFRNLIPRGIKLSPEDIWDRSSFILSIKMQDPQFAGQTKEKLSSRQSAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              +RD F  +L  +  +A  L E  I  +++RL+  K  +V RK       LPGKL DC
Sbjct: 347 SGIVRDAFSLWLNTHTDQAEALAEMCISNAQKRLKAAK--KVARKKVTSGPALPGKLTDC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S       ELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     + ++  +Q++ D+
Sbjct: 405 SGQDPMRGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVEASQVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+GC   S     +LRY K+ I+ DAD DG HIA+LL   F +    L+E+ H+++  
Sbjct: 465 SVAIGCDPDSNDI-SELRYGKICILADADSDGLHIATLLCALFMKHYKVLVEKGHIYVAM 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
           PPLFR+  G +  YA DE  KQ IL+    +  KGK++++RFKGLGEM   QL+ET MD 
Sbjct: 524 PPLFRVDVGKEVYYALDEAEKQGILDRISAEKKKGKVQVTRFKGLGEMNPLQLRETTMDP 583

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           N R L+++ I+   ++L         L   ++ +R  +++ +    
Sbjct: 584 NTRRLVQLTIDDAEDTLAIMDML---LAKKRSGDRKTWLETKGDLA 626


>gi|332172215|gb|AEE21469.1| DNA topoisomerase IV, B subunit [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 629

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 245/645 (37%), Positives = 352/645 (54%), Gaps = 21/645 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S+ Y+A +I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE + G+A+ I+V 
Sbjct: 2   SNQYNADAIEVLNGLDPVKRRPGMY---TDTTRPNHLSQEVIDNSVDEALGGFASSIKVV 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V D+GRG+PV+ H +    S +E+I+T LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHPDQSLEVTDDGRGMPVDIHAE-EGISGVELIMTKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V++ R+ +++   F  G  +  L+  +   +   GTR+ F PD + + D 
Sbjct: 118 VVNALSKRVEVSIRREGSVYQIAFENGEKVEDLKVVDTCGKRNSGTRVHFWPD-EQYFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
           A F   +LL + ++KA L   ++  +             E  E+YF  GLK YL      
Sbjct: 177 AKFSVTKLLHVLRAKAVLCPGLRIRFDDK-------VSKETHEWYFEDGLKDYLYQSTGE 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
              + ++          T                   SY N I T +GGTH +GLR  L 
Sbjct: 230 SITLPADTPFVGAVSGNTEAVDWAVIWLPEGGEMITESYVNLIPTAQGGTHVNGLRQGLL 289

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R I +  +D+      +LS  +++P+FAGQ K +L S  A   V  
Sbjct: 290 EAMREFCEFRNLLPRGIKLTPEDIWDRCSYVLSTKMQDPQFAGQIKERLSSRQAAAFVSG 349

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L Q+   A +L E  I  ++ RLR  + ++V RK   +   LPGKL DCS 
Sbjct: 350 IVKDAFSLWLNQHTGVAEQLAEMCISNAQSRLR--QSKKVARKKVTQGPALPGKLTDCST 407

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +ELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     S ++  +Q+I D+  
Sbjct: 408 QDTGRSELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNSWEVDSSQVLASQEIHDISV 467

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG    S+     LRY KV I+ DAD DG HIA+LL   F +    L+E  H ++  PP
Sbjct: 468 ALGIDPDSEDL-SGLRYNKVCILADADSDGLHIATLLCALFVRHFRALVENGHAYVAMPP 526

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANK 637
           LFRI  G +  YA DE  KQ IL+      K GK+ + RFKGLGEM   QL+ET MD N 
Sbjct: 527 LFRIDVGKEVFYALDEGEKQGILDRIAAEKKRGKVNVQRFKGLGEMNPLQLRETTMDPNT 586

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           R L+++ I +    L+        L   +A +R  +++ + +  D
Sbjct: 587 RRLVQLTIEEPSEMLETMDML---LAKKRAGDRKSWLESKGNMAD 628


>gi|307246171|ref|ZP_07528253.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306853106|gb|EFM85329.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
          Length = 637

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 252/650 (38%), Positives = 371/650 (57%), Gaps = 28/650 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y A  I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE ++GYA+ I+V L
Sbjct: 4   KRYGADEITVLKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALSGYASQIDVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V+DNGRG+PV+ H      S +E+I+T LHAGGKF N  Y  SGGLHGVGISV
Sbjct: 61  HTDNSLEVIDNGRGMPVDIHS-TEKISGVELIMTKLHAGGKFSNKNYTFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + + + R   I++  F  G+ +  L       + + GT + F P+PK F    
Sbjct: 120 VNALSQRVEIKIKRNGEIYTIAFENGVKVEELTVIGSCPKKQTGTTVRFYPNPKYFDSPR 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F A+RL  + ++KA L  ++   +         +     E +Y+  GL  YL   L+  
Sbjct: 180 -FSASRLRHLLRAKAVLCPKLTLNFVD-------HINNSSETWYYEDGLSDYLSETLKEF 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             + +  F G    +      V WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 ECLPNPPFIGDVTSETE---AVTWALTWLPEGGELLAESYVNLIPTAQGGTHVNGLRNGL 288

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
            + + ++ E+     +++ + +DD+      +LS+ I+EP+FAGQTK +L S  A   V+
Sbjct: 289 LKAMVEFCEIHNLLPKSVKLTADDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVD 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
           + ++D F  +L QN      + E  I  ++ RLR    ++V RK  +    LPGKLADC+
Sbjct: 349 STIKDAFSLWLNQNVQTGKLIAEMAISSAQSRLR--AAKKVVRKKLVSGPALPGKLADCT 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN     S+++  +Q++ D+ 
Sbjct: 407 SQDLSRTELFLVEGDSAGGSAKQARDKDYQAILPLRGKILNTWEVSSDQVLASQEVHDIA 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG    S    E+LRY KV I+ DAD DG HIA+LL   F +   +L++  H+++  P
Sbjct: 467 VALGIDPDSDSL-EELRYGKVCILADADSDGLHIATLLCALFLRHFPNLVKNGHVYVAMP 525

Query: 578 PLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PL+RI  G  +  YA DE  K+ IL    K  KGK  + RFKGLGEM  SQL+ET MD +
Sbjct: 526 PLYRIDIGKDEVHYALDEAEKEAILARLAKK-KGKPNVQRFKGLGEMNPSQLRETTMDPS 584

Query: 637 KRTLLRVEINK---DLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ +++      +  +T + ++ L+  K A++R +++Q R    +
Sbjct: 585 TRRLVQLTLDELDVAEENEPNTFEIMDMLLAKKRAEDRKQWLQNRGDEAE 634


>gi|54293674|ref|YP_126089.1| DNA topoisomerase IV subunit B [Legionella pneumophila str. Lens]
 gi|53753506|emb|CAH14961.1| Topoisomerase IV subunit B [Legionella pneumophila str. Lens]
          Length = 626

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 246/644 (38%), Positives = 356/644 (55%), Gaps = 22/644 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S+NY A +I +L GLEPV+ RPGMY   TD    +HL  EVIDN++DEV+AG+A+ I V+
Sbjct: 2   SENYTAEAIEVLSGLEPVQRRPGMY---TDTTRPNHLAQEVIDNSVDEVLAGFASRIIVT 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +G + V D+GRG+PV+ HP+    S +E+I+T LHAGGKF +  Y  SGGLHGVG+S
Sbjct: 59  LHEDGSIEVEDDGRGMPVDLHPQL-GLSGVEVIMTRLHAGGKFSDKNYSFSGGLHGVGVS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPDPKIFGDK 219
           VVNALS+ L VT+ R   I+   F+ G  L  L +    + +  GT I F P+ K F   
Sbjct: 118 VVNALSERLDVTIKRNGIIYQMTFANGDKLCELNETGVTKKRETGTVIRFWPNGKYFDTT 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
                  L  + ++KA L   +   +       E         + +  GL  YL+  L  
Sbjct: 178 -KISVKHLTHVLRAKAVLCSGLSMTFINKITNEE-------MNWCYEQGLTDYLRQTLP- 228

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
                 E       K          A +         SY N I T +GGTH +GLR  L 
Sbjct: 229 -EDYLPEEPFAGAFKSDEATVDWALAWSDSANGNLNESYVNLIPTIQGGTHVNGLRSGLF 287

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             + ++ EL     R + + +DDL  S   +LS+ ++EP+FAGQTK +L S      V N
Sbjct: 288 EAMSEFCELRNLLPRGVKLTADDLWESCQYVLSIKMKEPQFAGQTKERLSSRQTSGLVSN 347

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L Q+  +   +    IER+++RL+  + ++V RK   +   LPGKLADC Q
Sbjct: 348 VIKDAFAIWLNQHRNQGEAIAALAIERAQKRLK--QAKQVARKRVSQGPALPGKLADCLQ 405

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 ELF+VEGDSAGGSAKQARN+  QA+LPLRGKILN     S ++  +Q+I D+  
Sbjct: 406 TDLGQAELFLVEGDSAGGSAKQARNKDYQAILPLRGKILNSWEVDSSQVLASQEIHDISV 465

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+G    S    E LRY K+ I+ DAD DGAHIA+L+   F +    L++  H+F+  PP
Sbjct: 466 AIGVDPGSSDL-EGLRYGKICILADADSDGAHIATLICALFLRHFKPLVKAGHVFVAMPP 524

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+RI  G    YA D+E K +I++   +  K K+ + RFKGLGEM   QL+ET MD N R
Sbjct: 525 LYRIDAGKLIHYALDDEEKNRIVQHLSQTTKSKVNVQRFKGLGEMNPIQLRETTMDPNTR 584

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            L+++ ++ +  +       +NK    +A +R  +++ + +  +
Sbjct: 585 RLVQLTLDDEEQTEAIMDMMLNK---KRASDRKLWLETKGNLAE 625


>gi|163749330|ref|ZP_02156579.1| DNA topoisomerase IV subunit B [Shewanella benthica KT99]
 gi|161331049|gb|EDQ01975.1| DNA topoisomerase IV subunit B [Shewanella benthica KT99]
          Length = 628

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 245/647 (37%), Positives = 361/647 (55%), Gaps = 26/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y + SI +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AG+A  IE++
Sbjct: 2   TKQYTSDSIEVLNGLDPVKRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHATKIEIT 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+    S +E+ILT LHAG KF N  Y+ SGGLHGVGIS
Sbjct: 59  LHKDNSLEVIDDGRGMPVDIHPE-EGISGVELILTKLHAGAKFSNDNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + +TV R   ++   F  G  +  L +     R   GTR+ F P P  F   
Sbjct: 118 VVNALSSRVEITVRRSGIVYDIAFEHGDMVEELRETGTCGRRNTGTRVHFWPIPSYFDSA 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  ++L  + ++KA L   +K  ++            E +E+ +  GL  YLQ+ +++
Sbjct: 178 N-FSVSKLTYLLKAKAVLCPGLKIKFTNK-------QTDEVQEWLYESGLTDYLQSSVKD 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVA 337
             ++  E F G  +     +  V+WAI W  E  E    SY N I T  GGTH +G R  
Sbjct: 230 ALMLPEEPFIGSLQGN---KEAVDWAITWLPEGGEYLNESYVNLIPTPLGGTHVNGFRQG 286

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + +  +D+   +  ILS+ + +P+F+GQTK KL S  +   V
Sbjct: 287 LLESMREFCEFRNLMPRGVKLTPEDIWDRSSFILSIKLLDPQFSGQTKEKLSSRQSAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              +RD F  +L  N  +A  L E  I  + +RL+    ++V RK       LPGKL DC
Sbjct: 347 SGIVRDAFSLWLNTNIEQALALAEMCINNAHKRLK--SAKKVARKKVTSGPALPGKLTDC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S       ELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     + ++  ++++ ++
Sbjct: 405 SGQDPMRGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASEEVHNI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+GC         +LRY K+ I+ DAD DG HIA+LL   F +    L+E+ H+++  
Sbjct: 465 SVAIGCDPDCSDI-SELRYGKICILADADSDGLHIATLLCALFMKHYKILVEKGHIYVAM 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDA 635
           PPLFRI  G +  YA DE  KQ IL+       KGK++++RFKGLGEM   QL+ET MD 
Sbjct: 524 PPLFRIDVGKEIFYALDEAEKQGILDRIAAEKMKGKVQVTRFKGLGEMNPLQLRETTMDP 583

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           N R L+++ I+    ++         L   ++ +R  +++ +    D
Sbjct: 584 NTRRLVQLTIDDVEETVALMDML---LAKKRSGDRKIWLESKGDLAD 627


>gi|302554628|ref|ZP_07306970.1| DNA gyrase, B subunit [Streptomyces viridochromogenes DSM 40736]
 gi|302472246|gb|EFL35339.1| DNA gyrase, B subunit [Streptomyces viridochromogenes DSM 40736]
          Length = 706

 Score =  539 bits (1387), Expect = e-151,   Method: Composition-based stats.
 Identities = 239/705 (33%), Positives = 348/705 (49%), Gaps = 51/705 (7%)

Query: 23  LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82
             ++     +          NY A  + +LEGLE VR RPGMYIG TD + L H   E+I
Sbjct: 2   TAETSVPSTALLAGADRDGSNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEII 61

Query: 83  DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142
           DN++DE + GY + IEV L  +G + V DNGRGIPV+  PK    S +E+++T LHAGGK
Sbjct: 62  DNSVDEALGGYCDHIEVILQDDGSVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHAGGK 120

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP---------- 192
           F   +Y  SGGLHGVG SVVNALS  L V V R     +  F RG+P +           
Sbjct: 121 FGGGSYAASGGLHGVGASVVNALSARLDVEVDRGGHTHAISFRRGVPGAFSASGPDAKFE 180

Query: 193 ----LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
                + K+  + + GTR+ +  D +IF   A      L +  +  A+L   +      +
Sbjct: 181 AGGLRKVKKIPKTRTGTRVRYWADRQIFLKDAKLSLETLHQRARQTAFLVPGLTIVVRDE 240

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG------------ 296
             + E     E E F F GG+  + +    ++ +     F+G+   +             
Sbjct: 241 FGLGEGGSKGE-ESFRFDGGISEFCEYLASDKPVCDVLRFSGQGTFRETVPVLDEHGQMT 299

Query: 297 ----THRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN 351
               T    V+ A+ W         S+ N I T +GGTH +G   A+   + +     + 
Sbjct: 300 PTQVTRELDVDVAMRWGTGYDTTLRSFVNIIATPKGGTHVAGFEQAVATTMNEVLRTKKL 359

Query: 352 KRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
            R        DD +     +++V + EP+F GQTK  L +  A+R V N +      +L 
Sbjct: 360 LRVAEDDIVKDDALEGLTAVVTVRLAEPQFEGQTKEVLGTSAARRIVNNVISKELKGFLT 419

Query: 410 QNPIEATKLLEWVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGT 464
               +A +    V+E+           R+ +    RKTA+    LP KLADC  +    +
Sbjct: 420 STKRDAAQQARVVLEKAVAAARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDDVDRS 479

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           ELFIVEGDSA G+AK ARN   QA+LP+RGKILNV  +    +  N +   ++Q +G  +
Sbjct: 480 ELFIVEGDSALGTAKLARNSEFQALLPIRGKILNVQKSSVTDMLKNAECGAIIQVIGAGS 539

Query: 525 RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-- 582
              +  +  RY K+I+MTDADVDG+HI +LLLT F++ M  ++E   +F   PPL RI  
Sbjct: 540 GRTFDIDTARYGKIIMMTDADVDGSHIRTLLLTLFHRYMRPMVEAGRVFAAVPPLHRIEI 599

Query: 583 ---TQGT-KSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANK 637
               +G  K VY + +   +  L EF+  G + K  I R+KGLGEM A QL ET MD   
Sbjct: 600 VQPKKGQDKYVYTYSDRELRDKLMEFQSKGIRYKDSIQRYKGLGEMDADQLAETTMDPRH 659

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           RTL R+ ++     L+  +   + LMG     R +FI   A+ +D
Sbjct: 660 RTLRRINLSD----LEAAEQVFDLLMGNDVAPRKEFISNSAATLD 700


>gi|307257307|ref|ZP_07539077.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306864157|gb|EFM96070.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 637

 Score =  539 bits (1387), Expect = e-151,   Method: Composition-based stats.
 Identities = 253/650 (38%), Positives = 370/650 (56%), Gaps = 28/650 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y A  I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE ++GYA+ I+V L
Sbjct: 4   KRYGADEITVLKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALSGYASQIDVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V+DNGRG+PV+ H      S +E+ILT LHAGGKF N  Y  SGGLHGVGISV
Sbjct: 61  HTDNSLEVIDNGRGMPVDIHS-TEKISGVELILTKLHAGGKFSNKNYTFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + + + R   I++  F  G+ +  L       + + GT + F P+PK F    
Sbjct: 120 VNALSQRVEIKIKRNGEIYTIAFENGVKVEELTVIGSCPKKQTGTTVRFYPNPKYFDSPR 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L  ++   +         +     E +Y+  GL  YL   L+  
Sbjct: 180 -FSVSRLRHLLRAKAVLCPKLTLNFVD-------HINNSSETWYYEDGLSDYLSEALKEF 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             + +  F G    +      V WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 ECLPNPPFIGDVISETE---AVSWALTWLPEGGELVAESYVNLIPTAQGGTHVNGLRNGL 288

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
            + + ++ E+     +++ + +DD+      +LS+ I+EP+FAGQTK +L S  A   V+
Sbjct: 289 LKAMVEFCEIHNLLPKSVKLTTDDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVD 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
           + ++D F  +L QN      + E  I  ++ RLR    ++V RK  +    LPGKLADC+
Sbjct: 349 STIKDAFSLWLNQNVQTGKLIAEMAISSAQSRLR--AAKKVVRKKLVSGPALPGKLADCT 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN     S+++  +Q++ D+ 
Sbjct: 407 SQDLSRTELFLVEGDSAGGSAKQARDKDYQAILPLRGKILNTWEVSSDQVLASQEVHDIA 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG    S    E+LRY KV I+ DAD DG HIA+LL   F +   +L++  H+++  P
Sbjct: 467 VALGIDPDSDSL-EELRYGKVCILADADSDGLHIATLLCALFLRHFPNLVKNGHVYVAMP 525

Query: 578 PLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PL+RI  G  +  YA DE  K+ IL    K  KGK  + RFKGLGEM  SQL+ET MD +
Sbjct: 526 PLYRIDIGKDEVHYALDEAEKEAILARLAKK-KGKPNVQRFKGLGEMNPSQLRETTMDPS 584

Query: 637 KRTLLRVEINK---DLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ +++      +  DT + ++ L+  K A++R +++Q R    +
Sbjct: 585 TRRLVQLTLDELDVAEENEPDTFEIMDMLLAKKRAEDRKQWLQNRGDEAE 634


>gi|238782858|ref|ZP_04626887.1| DNA topoisomerase 4 subunit B [Yersinia bercovieri ATCC 43970]
 gi|238716281|gb|EEQ08264.1| DNA topoisomerase 4 subunit B [Yersinia bercovieri ATCC 43970]
          Length = 631

 Score =  539 bits (1387), Expect = e-151,   Method: Composition-based stats.
 Identities = 248/648 (38%), Positives = 359/648 (55%), Gaps = 26/648 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
              +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  I+V
Sbjct: 2   TESSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARRIDV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGI
Sbjct: 59  ILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS  + VTV R   I+S  F  G  +  L+      +   GT + F PD   F  
Sbjct: 118 SVVNALSKRVEVTVRRDGQIYSIAFENGDKVQDLQVIGTCGKRNTGTSVHFWPDVSFFDS 177

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F  +RL  + ++KA L   V+  +       E       + + +  GL  YL   ++
Sbjct: 178 PR-FSVSRLSHLLKAKAVLCPGVEIVFKDLVNNTE-------QRWCYADGLTDYLMEAVD 229

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336
               +    F G           ++WA+ W  E  E    SY N I T +GGTH +GLR 
Sbjct: 230 GLITLPEAPFVGSFAGDTE---AIDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 286

Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            L   ++ + E      R + + +DD+      +LSV +++P+FAGQTK +L S      
Sbjct: 287 GLLDAMRDFCEYRNILPRGVKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 346

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           V   ++D F  +L QN   A +L E  I  ++ R+R    ++V RK       LPGKLAD
Sbjct: 347 VSGVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C+      TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D
Sbjct: 405 CTSQDLSMTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 464

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  A+G    S+     LRY K+ I+ DAD DG HIA+LL   F +    L+   H+++ 
Sbjct: 465 ISVAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVRNGHVYVA 523

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+RI  G +  YA DEE K  +LE+ K+  +GK  + RFKGLGEM   QL+ET +D 
Sbjct: 524 MPPLYRIDLGKEVFYALDEEEKAGVLEQLKRK-RGKPNVQRFKGLGEMNPLQLRETTLDP 582

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           N R L+++    D + +  T   ++ L+  K +++R  ++QE+    +
Sbjct: 583 NTRRLVQLT--IDDDDIDKTMAMMDMLLAKKRSEDRRNWLQEKGDTAE 628


>gi|328885549|emb|CCA58788.1| Topoisomerase IV subunit B [Streptomyces venezuelae ATCC 10712]
          Length = 705

 Score =  539 bits (1387), Expect = e-151,   Method: Composition-based stats.
 Identities = 241/705 (34%), Positives = 351/705 (49%), Gaps = 53/705 (7%)

Query: 24  KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVID 83
                +P S        + NY A  + +LEGLE VR RPGMYIG TD + L H   E+ID
Sbjct: 2   TAETSVPSSALLTADRDASNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCIWEIID 61

Query: 84  NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143
           N++DE + GY + IEV L  +G + V DNGRGIPV+  PK    S +E+++T LHAGGKF
Sbjct: 62  NSVDEALGGYCDHIEVILHDDGSVEVQDNGRGIPVDVEPK-TGLSGVEVVMTKLHAGGKF 120

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV---- 199
              +Y  SGGLHGVG SVVNALS  L V V R +   +  F RG+P    E+        
Sbjct: 121 GGGSYAASGGLHGVGASVVNALSARLDVEVDRNSATHAISFRRGVPGIFTEQGPDSPFDP 180

Query: 200 -----------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
                      + + GTR+ +  D +IF   A      L +  +  A+L   +      +
Sbjct: 181 GNGLRKGKRVPKTRTGTRVRYWADRQIFLKDAKLSLETLHQRARQTAFLVPGLTIVVRDE 240

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE--------------- 293
           +++A       +E F F GG+  + +   +++++   +  TG+                 
Sbjct: 241 RDLA--GIGKSEETFRFDGGISEFCEYLAQDKAVCDIQRLTGQGTFKETVPVLDERGHMT 298

Query: 294 -KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN 351
             + T    V+ A+ W       + S+ N I T +GGTH SG   A+T+ + +     + 
Sbjct: 299 PTEVTRELAVDVALRWGTGYDSTVKSFVNIIATPKGGTHVSGFEQAVTKTVNEVLRSAKM 358

Query: 352 KRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
            R        DD +     +++V + EP+F GQTK  L +  A+R V N +      +L 
Sbjct: 359 LRVAEDDIVKDDALEGLTAVVTVRLAEPQFEGQTKEILGTSAARRIVANVVAKELKAFLT 418

Query: 410 QNPIEATKLLEWVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGT 464
               +A      V+E+           R+ +    RKTA+    LP KLADC  +    +
Sbjct: 419 STKRDAKAQARAVLEKAVAAARTRIAARQHKEAQRRKTALESSSLPAKLADCRSDDVERS 478

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           ELFIVEGDSA G+AK ARN   QA+LP+RGKILNV  +    +  N +   ++Q +G  +
Sbjct: 479 ELFIVEGDSALGTAKLARNSEFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVIGAGS 538

Query: 525 RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-- 582
              +  +  RY K++++ DADVDGAHI  LLLT F + M  ++E   +F   PPL RI  
Sbjct: 539 GRTFDIDAARYGKIVLLVDADVDGAHIRCLLLTLFQRYMRPMVEAGRVFAAVPPLHRIEL 598

Query: 583 ---TQGT-KSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANK 637
               +G  K VY + +   ++ L EF++ G + K  I R+KGLGEM A QL ET MD   
Sbjct: 599 VQPKKGQDKYVYTYSDNELRQTLLEFQRKGVRYKDAIQRYKGLGEMDADQLAETTMDPRH 658

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           RTL R+ I      L   +   + LMG     R +FI   A+ +D
Sbjct: 659 RTLRRINIGD----LDAAEQVFDLLMGNDVAPRKEFITGSAATLD 699


>gi|260913631|ref|ZP_05920107.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Pasteurella dagmatis ATCC
           43325]
 gi|260632170|gb|EEX50345.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Pasteurella dagmatis ATCC
           43325]
          Length = 632

 Score =  539 bits (1387), Expect = e-151,   Method: Composition-based stats.
 Identities = 258/646 (39%), Positives = 366/646 (56%), Gaps = 22/646 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++NY A+ I IL+ LEPV++RPGMY   TD    +HL  EVIDN++DE +AGYA  IEV 
Sbjct: 2   TNNYSANEITILKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALAGYATKIEVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+DNGRG+PV+ HP     S +E+ILT LHAGGKF N  YE SGGLHGVGIS
Sbjct: 59  LHKDQSLEVIDNGRGMPVDIHP-VEKVSGVEVILTKLHAGGKFSNKNYEFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ + VTV R   ++   F  G+ +  LE       +             + D  
Sbjct: 118 VVNALSERVDVTVKRNGEVYKIAFENGVKVEELEVIGTCGRRTTGTTVRFKPNPKYFDSD 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L   ++  +       E       + + +  GL  YL   +   
Sbjct: 178 KFSISRLRHLLRAKAVLCSGLEIKFIDKVNDTE-------DVWLYEDGLSDYLSEAVNGL 230

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +    F G  +     +  V WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 231 LTLPESPFIGDFKGD---KEAVSWALLWLPEGGELLGESYVNLIPTIQGGTHVNGLRQGL 287

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E      R + + +DD+      +LSV +++P+FAGQTK +L S  +   V 
Sbjct: 288 LDAMREFCEFRNLLPRGVKLTADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQSAVFVS 347

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             ++D F  +L QN  +A +L E  I  ++ RLR    ++V RK  +    LPGKLADCS
Sbjct: 348 GVVKDAFSLWLNQNVQQAEQLAEMAISSAQRRLR--ASKKVVRKKLVSGPALPGKLADCS 405

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           Q     TELF+VEGDSAGGSAKQAR+R  QA+LPLRGKILN     SE++ ++ +I D+ 
Sbjct: 406 QQDLEKTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSSEQVLSSTEIHDIA 465

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG    S      LRY KV I+ DAD DG HIA+LL   F +    L++  H+++  P
Sbjct: 466 VALGIDPDSDDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMP 524

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G +  YA DE  K+ IL+   K+ KGK  + RFKGLGEM   QL+ET MD N 
Sbjct: 525 PLYRIDLGKEVFYALDEGEKEAILDRL-KNKKGKPNVQRFKGLGEMNPIQLRETTMDPNT 583

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++  NK+ ++  +T + ++ L+  K +++R  ++Q +   +D
Sbjct: 584 RRLVQLTYNKEEDNGAETLELMDMLLAKKRSEDRKNWLQTKGDQVD 629


>gi|254391061|ref|ZP_05006269.1| DNA topoisomerase IV subunit B [Streptomyces clavuligerus ATCC
           27064]
 gi|326443881|ref|ZP_08218615.1| DNA topoisomerase IV subunit B [Streptomyces clavuligerus ATCC
           27064]
 gi|197704756|gb|EDY50568.1| DNA topoisomerase IV subunit B [Streptomyces clavuligerus ATCC
           27064]
          Length = 705

 Score =  539 bits (1387), Expect = e-151,   Method: Composition-based stats.
 Identities = 238/705 (33%), Positives = 352/705 (49%), Gaps = 53/705 (7%)

Query: 24  KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVID 83
                +P +     +    NY A  + +LEGLE VR RPGMYIG TD + L H   E+ID
Sbjct: 2   TAETSVPSTTLLTAERDGSNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIID 61

Query: 84  NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143
           N++DE + GY + IEV L  +G + V DNGRGIPV+  PK    S +E+++T LHAGGKF
Sbjct: 62  NSVDEALGGYCDHIEVILHDDGSVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHAGGKF 120

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV---- 199
              +Y  SGGLHGVG SVVNALS  L V V R  +  +  F RG+P    E+        
Sbjct: 121 GGGSYAASGGLHGVGASVVNALSARLDVEVDRNGSTHAISFRRGVPGIFTEQGPDAPFDP 180

Query: 200 -----------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
                      + + GTR+ +  D +IF  +A      L +  +  A+L   +      +
Sbjct: 181 ANGLRKGKRVPKTRTGTRVRYWTDRQIFLKEARLALETLHQRARQTAFLVPGLTIVVRDE 240

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE--------------- 293
           +++A +     +E F F GG+  + +   +++++      TG+                 
Sbjct: 241 RDLAGEG--KSQEIFRFDGGISEFCEYLAQDKAVCDVLRLTGQGTFKETVPVLDDRGHMT 298

Query: 294 -KKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN 351
             + T    V+ A+ W       + S+ N I T +GGTH +G   ++T+ + +     + 
Sbjct: 299 PTEVTRELGVDIALRWGTGYDTAVRSFVNIIATPKGGTHVTGFERSVTKTVNEVLRSAKL 358

Query: 352 KRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
            R        DD +     +++V + EP+F GQTK  L +  A R V N +      +L 
Sbjct: 359 LRVAEDDIVKDDALEGLTAVVTVRLAEPQFEGQTKEVLGTSAANRIVSNVVARELKAFLT 418

Query: 410 QNPIEATKLLEWVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGT 464
               +A      V+E+           R+ +    RKTA+    LP KLADC  +    +
Sbjct: 419 STKRDAKAQARAVLEKAVAAARTRIAARQHKEAQRRKTALETSSLPAKLADCRSDDVERS 478

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           ELFIVEGDSA G+AK ARN   QA+LP+RGKILNV  +    +  N +   ++Q +G  +
Sbjct: 479 ELFIVEGDSALGTAKLARNSEFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVIGAGS 538

Query: 525 RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-- 582
              +  +  RY K++++ DADVDGAHI  LLLT F + M  ++E   +F   PPL RI  
Sbjct: 539 GRTFDLDAARYGKIVLLVDADVDGAHIRCLLLTLFQRYMRPMVEAGRVFAAVPPLHRIEL 598

Query: 583 ---TQGT-KSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANK 637
               +G  K VY + +   ++ L EF++ G + K  I R+KGLGEM A QL ET MD   
Sbjct: 599 VQPKKGQDKYVYTYSDNELRQTLLEFQRKGVRYKDSIQRYKGLGEMDADQLAETTMDPRH 658

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           RTL R+ I      L   +   + LMG +   R +FI   A+ +D
Sbjct: 659 RTLRRINIGD----LDAAEQVFDLLMGNEVAPRKEFITSSAATLD 699


>gi|311113416|ref|YP_003984638.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Rothia dentocariosa
           ATCC 17931]
 gi|310944910|gb|ADP41204.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Rothia dentocariosa
           ATCC 17931]
          Length = 700

 Score =  539 bits (1387), Expect = e-151,   Method: Composition-based stats.
 Identities = 233/703 (33%), Positives = 339/703 (48%), Gaps = 62/703 (8%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A+ NY A  + +LEGLE VR RPGMYIG TD + L     E+IDN++DE +AGY   I++
Sbjct: 2   AASNYTARHLSVLEGLEAVRKRPGMYIGSTDSRGLMQCLWEIIDNSVDEALAGYGQSIQI 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +G + V D+GRGIP +  P+    S LE++ T LHAGGKF   +Y  SGGLHGVG 
Sbjct: 62  ILYRDGSVEVQDDGRGIPTDVEPR-TGLSGLEVVFTKLHAGGKFGGGSYTASGGLHGVGA 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK----------------- 202
           SVVNALS  L V V R +  +   F  G+P      +                       
Sbjct: 121 SVVNALSSRLDVQVDRGSKTYQMSFRHGLPGVFDSGRTPKPEDSFTPADEKHPALQIVGR 180

Query: 203 -----RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
                 GTR+ +  DP+IF   A F    L+   +  ++L   ++     ++ I    G 
Sbjct: 181 AKRGVTGTRVRYWADPQIFTPDARFSYEDLVARARQTSFLIPGLRIAIRDERRIPGTPGE 240

Query: 258 --PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHR 299
             P +E F   GG+  +++    + ++     F+G+                   +    
Sbjct: 241 FGPYEEVFQHDGGISEFVEFLAHDSAVTDIWRFSGRGSFTETVPVLGSDGRSKLTEVDRE 300

Query: 300 GTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--- 355
             V+ A+ W         S+ N I T +GGTH +G    L +  +K+      K  +   
Sbjct: 301 CEVDIALRWGIGYETTIRSFVNIIATPKGGTHSTGFEQGLLKTFRKHLADNARKFKVGND 360

Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415
            +  DD +     +L+V + EP+F GQTK  L +   ++ V   + D     L       
Sbjct: 361 KVEKDDALAGLTAVLTVRLAEPQFEGQTKEILGTPAVRQIVSKVVGDQLKARLNSTARAE 420

Query: 416 TKL----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
                   E V+   + R+  R  +E   RKTA+    +P KL DC       +ELFIVE
Sbjct: 421 KAQATALCEKVVSEMKTRISARIHKETQRRKTALESSSMPTKLVDCRSTNVEHSELFIVE 480

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530
           GDSA G+A+ AR+ + QA+LP+RGKILN   A    +  N +   L+Q +G  +   +  
Sbjct: 481 GDSALGTARLARSSAYQALLPIRGKILNTQRASVTDMLANAECAALIQVIGAGSGRTFEL 540

Query: 531 EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT-----QG 585
           E  RY KVI+MTDADVDGAHI +LLLT  Y+ M  LIE   ++   PPL R+      + 
Sbjct: 541 EAARYSKVIMMTDADVDGAHIRTLLLTLMYRYMRPLIEDGRVYAAVPPLHRVEVINRGKP 600

Query: 586 TKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644
            + VY + E    ++L + +  GKG K  I R+KGLGEM A QL ET MD   R L R+ 
Sbjct: 601 NEMVYTYSERQLHELLGQLQAEGKGYKEPIQRYKGLGEMDADQLAETTMDPRHRMLRRIR 660

Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI--DDVG 685
           I       +  + + + LMG +   R +FI   A  +  D++ 
Sbjct: 661 IED----AEAAEQAFSLLMGAEVAPRKEFIIAGAHQLDQDNID 699


>gi|150019136|ref|YP_001311390.1| DNA topoisomerase IV subunit B [Clostridium beijerinckii NCIMB
           8052]
 gi|149905601|gb|ABR36434.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium beijerinckii NCIMB
           8052]
          Length = 649

 Score =  539 bits (1387), Expect = e-151,   Method: Composition-based stats.
 Identities = 229/662 (34%), Positives = 347/662 (52%), Gaps = 36/662 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
             ++ YD + +  LE LEPVR+RPGMYIG T  K LHH   E+IDN++DE+  GY N + 
Sbjct: 4   KNTNAYDVTDLTSLEKLEPVRIRPGMYIGSTGSKGLHHCIWEIIDNSIDEIANGYGNKVT 63

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           ++L+ +  +TV+DNGRGIP   HP    KS +E++ T LH GGKFDN  Y+ SGGLHGVG
Sbjct: 64  ITLNEDKSVTVLDNGRGIPTGIHP-IKKKSGVEMVFTELHTGGKFDNKNYKTSGGLHGVG 122

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTRI 207
            +VVNALS+ L V V +   I+ Q+F             G  +  L+   K     GT+I
Sbjct: 123 AAVVNALSEWLEVEVYQNGNIYRQRFEYAFDKELKREMPGTSVGSLKVIGKTDKV-GTKI 181

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
           TF+PD +IF     F    +    Q  A+ +  ++      ++  E         +Y   
Sbjct: 182 TFKPDKEIFST-TDFKFDIIDSRLQELAFQNKGIRLELIDKRKGQEITKE-----YYSEN 235

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEENPEIT-SYCNTILTD 325
           GL  ++    E+++ I  E      E+  G  +   E  I + +   E   SY N I T 
Sbjct: 236 GLLDFINYLNESKTPIHEEPIIFDGERTVGELQLYGEVCIQFTDSTTEYIASYVNNIPTT 295

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           E GTHE+G +  +TR  K++++      ++      DDL      I+ + I  P F GQT
Sbjct: 296 EAGTHETGFKTGMTRSFKEWSKKLGLVKEKDKEFEGDDLREGMTAIVRIKITNPIFEGQT 355

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKT 442
           KTKL + +A   + + +   F  ++  N   AT ++   +E ++ R + +K  E   +K 
Sbjct: 356 KTKLGNNEAYTMMNDLVYTKFSEWIEDNKTLATSIINNALEAAKRRDKIKKINEAEKKKI 415

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
                 L GK+A C+       E  +VEGDSAGGSAKQAR+R  Q ++P +GKI+N    
Sbjct: 416 GKGTAPLAGKVAVCTLKDKTVNEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQ 475

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
             E +  ++++     A+G  T   YREEDL+Y+K+IIM+DADVDG HI +L +T+ Y+ 
Sbjct: 476 KLENVLASEELKIFNTAVGTGTLDNYREEDLKYDKIIIMSDADVDGYHIRTLWMTYIYRY 535

Query: 563 MYDLIEQKHLFLISPPLFRI---TQGTK-SVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           M  LI   HL+L  PPL+++   T+G     YA+ ++  +   ++  K       I R+K
Sbjct: 536 MRPLIANGHLYLAQPPLYKVYRETKGKTIVKYAYSDDELENTKKQVGKGAL----IQRYK 591

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           GLGEM   QL +T ++   RTLL+V I          +  ++ LMG   + R  ++ +  
Sbjct: 592 GLGEMNPDQLWDTTLNPESRTLLQVTIED----AAKAEKMVSLLMGDIVEPRKNYMYKYG 647

Query: 679 SF 680
            F
Sbjct: 648 EF 649


>gi|320008123|gb|ADW02973.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces flavogriseus ATCC
           33331]
          Length = 708

 Score =  539 bits (1387), Expect = e-151,   Method: Composition-based stats.
 Identities = 238/709 (33%), Positives = 349/709 (49%), Gaps = 53/709 (7%)

Query: 20  SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79
                       + A      S NY A  + +LEGLE VR RPGMYIG TD + L H   
Sbjct: 1   MTADSVPSTALLTGAGGADRDSSNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLW 60

Query: 80  EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139
           E+IDN++DE + GY + IEV L  +  + V DNGRGIPV+  PK    S +E+++T LHA
Sbjct: 61  EIIDNSVDEALGGYCDTIEVILHDDASVEVRDNGRGIPVDVEPK-TGLSGIEVVMTKLHA 119

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKF   +Y  SGGLHGVG SVVNALS  L V V R +   +  F RG+P    E+    
Sbjct: 120 GGKFGGGSYAASGGLHGVGASVVNALSARLDVEVDRNSATHAISFRRGVPGMFTEQGPDS 179

Query: 200 ---------------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244
                          + + GTR+ +  D +IF   A  +   L +  +  A+L   +   
Sbjct: 180 PFDPANGLRKGKRVPKTRTGTRVRYWADRQIFLKDAKLNLETLYQRARQTAFLVPGLTIV 239

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------- 293
              ++ +  +      E F F GG+  + +   +++++   +  +G              
Sbjct: 240 VRDERGVDGEGKTE--ETFRFDGGISEFCEYLAQDKAVCDVQRLSGTGTFKETVPVLDDR 297

Query: 294 -----KKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
                 + T    V+ A+ W         S+ N I T +GGTH +G   +LT+ + +   
Sbjct: 298 GHMTATEVTRELGVDIALRWGTGYDTNLKSFVNIIATPKGGTHVTGFERSLTKTVNEVLR 357

Query: 348 LTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
             +  R        DD +     +++V + EP+F GQTK  L +  A R V N +     
Sbjct: 358 SAKLLRVAEDDIVKDDALEGLTAVVTVRLAEPQFEGQTKEVLGTSAANRIVANVVSKELK 417

Query: 406 HYLVQNPIEATKLLEWVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
            +L     +A      V+++           R+ +    RKTA+    LP KLADC  + 
Sbjct: 418 AFLTSTKRDAKAQARAVLDKAVAAARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDD 477

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +ELFIVEGDSA G+AK ARN   QA+LP+RGKILNV  +    +  N +   ++Q +
Sbjct: 478 VERSELFIVEGDSALGTAKLARNSEFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVI 537

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           G  +   +  +  RY KVI+MTDADVDG+HI +LLLT F + M  ++E   +F   PPL 
Sbjct: 538 GAGSGRTFDIDAARYGKVIMMTDADVDGSHIRTLLLTLFQRYMRPMVEAGRVFAAVPPLH 597

Query: 581 RI-----TQGT-KSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAM 633
           RI      +G  K VY + +   ++ L E  +K+ + K  I R+KGLGEM A QL ET M
Sbjct: 598 RIELVQPKKGQDKYVYTYSDNELRQTLLELQRKNVRFKDSIQRYKGLGEMDADQLAETTM 657

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           D   RTL R+ I      L+ ++   + LMG +   R +FI   A+ +D
Sbjct: 658 DPRHRTLRRINIGD----LESSEQIFDLLMGNEVAPRKEFITSSAATLD 702


>gi|239928501|ref|ZP_04685454.1| DNA topoisomerase IV subunit B [Streptomyces ghanaensis ATCC 14672]
 gi|291436826|ref|ZP_06576216.1| DNA topoisomerase IV subunit B [Streptomyces ghanaensis ATCC 14672]
 gi|291339721|gb|EFE66677.1| DNA topoisomerase IV subunit B [Streptomyces ghanaensis ATCC 14672]
          Length = 707

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 243/707 (34%), Positives = 354/707 (50%), Gaps = 55/707 (7%)

Query: 24  KKSGEIPDSP--AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEV 81
                +P +   A A++  S+ Y A  + +LEGLE VR RPGMYIG TD + L H   E+
Sbjct: 2   TADTSVPSTALLAGADRDGSN-YTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEI 60

Query: 82  IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141
           IDN++DE + GY + IEV L  +G + V DNGRGIPV+  PK    S +E+++T LHAGG
Sbjct: 61  IDNSVDEALGGYCDRIEVVLHDDGSVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHAGG 119

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------ 189
           KF   +Y  SGGLHGVG SVVNALS  L V V R     +  F RG+P            
Sbjct: 120 KFGGGSYAASGGLHGVGASVVNALSARLDVEVDRGGHTHAISFRRGVPGAFAAGGPDGKF 179

Query: 190 ---LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
                  + K+  +++ GTR+ +  D +IF   A      L +  +  A+L   +     
Sbjct: 180 EAGNGLRKVKKIPKSRSGTRVRYWADRQIFLKDAKLSLETLHQRARQTAFLVPGLTIVVR 239

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE------------- 293
            +  + E     E E F F GG+  + +    +R +  +  FTG+               
Sbjct: 240 DEYGLGEGGSKGE-ESFRFDGGISEFCEFLATDRPVCDTLRFTGQGTFKETVPVLDEHGQ 298

Query: 294 ---KKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
               + T    V+ A+ W       + S+ N I T +GGTH +G   A+ + + +     
Sbjct: 299 MTPTEVTRELGVDVALRWGTGYDATVRSFVNIIATPKGGTHVAGFEQAVAKTMNEVLRAK 358

Query: 350 QNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
           +  R        DD +     +++V + EP+F GQTK  L +  A+R V   +      +
Sbjct: 359 KMLRVAEDDIVKDDALEGLTAVVTVRLAEPQFEGQTKEVLGTSAARRIVNTVVSRELKAF 418

Query: 408 LVQNPIEATKLLEWVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAH 462
           L     +A +    V+E+           R+ +    RKTA+    LP KLADC  +   
Sbjct: 419 LTSTKRDAAQQARVVLEKAVAAARTRIAARQHKDAQRRKTALESSTLPAKLADCRSDNVD 478

Query: 463 GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
            +ELFIVEGDSA G+AK ARN   QA+LP+RGKILNV  +    +  N +   ++Q +G 
Sbjct: 479 RSELFIVEGDSALGTAKLARNSEFQALLPIRGKILNVQKSSVTDMLKNAECGAIIQVIGA 538

Query: 523 RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI 582
            +   +  +  RY K+I+MTDADVDG+HI +LLLT F++ M  ++E   +F   PPL RI
Sbjct: 539 GSGRTFDIDAARYGKIIMMTDADVDGSHIRTLLLTLFHRYMRPMVEAGRVFAAVPPLHRI 598

Query: 583 -----TQGT-KSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDA 635
                 +G  K VY + +   +  L EF+  G + K  I R+KGLGEM A QL ET MD 
Sbjct: 599 ELVQPKRGQEKYVYTYSDRELRDKLMEFQSKGVRYKDSIQRYKGLGEMDADQLAETTMDP 658

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
             RTL R+ +      L+  +   + LMG     R +FI   A+ +D
Sbjct: 659 RHRTLRRINLTD----LEAAEQVFDLLMGNDVAPRKEFISSSAATLD 701


>gi|90411890|ref|ZP_01219898.1| DNA topoisomerase IV subunit B [Photobacterium profundum 3TCK]
 gi|90327148|gb|EAS43520.1| DNA topoisomerase IV subunit B [Photobacterium profundum 3TCK]
          Length = 627

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 256/648 (39%), Positives = 367/648 (56%), Gaps = 28/648 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
              +Y+A SI +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  +EV
Sbjct: 2   TEQSYNAGSIEVLNGLEPVRRRPGMY---TDTVRPNHLGQEVIDNSVDEALAGHARKVEV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +  L V+D+GRG+PV+ HP     S +E+IL  LHAGGKF N +Y+ SGGLHGVGI
Sbjct: 59  ILHADQSLEVIDDGRGMPVDIHP-VEGVSGVELILCKLHAGGKFSNDSYQFSGGLHGVGI 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS  + V+V R   I+   F  G  +S LE      R  +GTR+ F PD   + D
Sbjct: 118 SVVNALSKRVEVSVKRDGQIYQIAFEHGDKVSELEVIGTCGRRAKGTRVHFWPDA-RYFD 176

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
            A F   RL  + ++KA L   ++  ++            E   + +  GLK YL   ++
Sbjct: 177 SAKFSVTRLKSVLKAKAVLCPGLEIVFTNK-------IADETVRWCYEDGLKDYLLEGVK 229

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336
             +L+  E F G      +     +WA+ W  E  E    SY N I T +GGTH +GLR 
Sbjct: 230 GYTLLPEEPFVGVF---TSQIEAADWALLWLPEGGELITESYVNLIPTAQGGTHVNGLRQ 286

Query: 337 ALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            L   ++++ E      R + + +DD+      +LSV +++P+FAGQTK +L S      
Sbjct: 287 GLLDAMREFCEFRNLLPRGVKLTADDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 346

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           V   ++D F  +L + P  A +L E  I  +  R+R    ++V RK       LPGKLAD
Sbjct: 347 VSGVVKDAFSLWLNERPQLAEQLAETCIANAHRRMR--ASKKVVRKKIASGPALPGKLAD 404

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CSQ   + TELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     ++++  +Q++ D
Sbjct: 405 CSQQDLNRTELFLVEGDSAGGSAKQARDRMFQAIMPLRGKILNTWEVSADQVLASQEVHD 464

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  ALG    S      LRY K+ ++ DAD DG HIA+LL   F +    L+   H+++ 
Sbjct: 465 ISVALGIDPDSDDL-SGLRYGKICVLADADSDGLHIATLLCALFMKHFETLVRAGHVYIA 523

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+RI    +  YA DE+ K  IL+      +GK+ + RFKGLGEM   QL+ET MD 
Sbjct: 524 MPPLYRIDLAKEVYYALDEDEKNGILDRLSTK-RGKVNVQRFKGLGEMNPLQLRETTMDP 582

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           N R L+++ I+ D      T + ++ L+G K A++R  ++Q++    +
Sbjct: 583 NTRRLVQLTIDDDTK----TNEMMDMLLGKKRAEDRRFWLQDKGDMAE 626


>gi|270157507|ref|ZP_06186164.1| DNA topoisomerase IV B subunit [Legionella longbeachae D-4968]
 gi|289164107|ref|YP_003454245.1| Topoisomerase IV subunit B [Legionella longbeachae NSW150]
 gi|269989532|gb|EEZ95786.1| DNA topoisomerase IV B subunit [Legionella longbeachae D-4968]
 gi|288857280|emb|CBJ11107.1| Topoisomerase IV subunit B [Legionella longbeachae NSW150]
          Length = 627

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 249/646 (38%), Positives = 361/646 (55%), Gaps = 25/646 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S+NY A +I +L GLEPV+ RPGMY   TD    +HL  EVIDN++DEV+AG+A+ I V+
Sbjct: 2   SENYTAQAIEVLSGLEPVQRRPGMY---TDTTRPNHLAQEVIDNSVDEVLAGFASHIRVT 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +G + V D+GRG+PV+ HP+    S +E+I+T LHAGGKF +  Y  SGGLHGVG+S
Sbjct: 59  LHEDGSIEVEDDGRGMPVDLHPQL-GLSGVEVIMTRLHAGGKFSDKNYSFSGGLHGVGVS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPDPKIFGDK 219
           VVNALS+ L VT+ R   I+   F+ G  L  L +    + +  GT I F P+ K F   
Sbjct: 118 VVNALSERLDVTIKRNGLIYQMSFANGDKLCELNEAGLTKKRDTGTTIRFWPNSKYFDTT 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
                  L+ + ++KA L   +   +       E         + +  GL  YL   L +
Sbjct: 178 R-ISIKHLMHVLRAKAVLCTGLSMTFINKVNNEE-------MHWCYEKGLIDYLNQSLPD 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWA--IAWCEENPEITSYCNTILTDEGGTHESGLRVA 337
              +  E F G+ +       TV+WA   +         SY N I T +GGTH +GLR  
Sbjct: 230 GDYLPEEPFIGEFKSD---EATVDWALVWSNTANTGFSESYVNLIPTVQGGTHVNGLRSG 286

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   + ++ EL     R + + +DDL      +LSV ++EP+FAGQTK +L S      V
Sbjct: 287 LFDAMAEFCELRNLLPRGVKLTADDLWEPCQYVLSVKMKEPQFAGQTKERLSSRQISAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
            N ++D F  +L Q+  +   +    IER+++RL+  + ++V RK   +   LPGKLADC
Sbjct: 347 SNVVKDAFALWLNQHRNQGEAIAALTIERAQKRLK--QAKQVARKRVSQGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            Q      ELF+VEGDSAGGSAKQARN+  QA+LPLRGKILN     S ++  +Q+I D+
Sbjct: 405 LQTDLSQAELFLVEGDSAGGSAKQARNKDFQAILPLRGKILNTWEVDSSQVLASQEIHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY K+ I+ DAD DGAHIA+L+   F +    L++  H+F+  
Sbjct: 465 SVAIGVDPGSDDL-SGLRYGKLCILADADSDGAHIATLICALFLRHFKPLVQAGHVFVAM 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA D+E K +IL    +  + K  + RFKGLGEM   QL+ET MD N
Sbjct: 524 PPLYRIDAGKEVYYALDDEEKNRILNHLTQTTRAKANVQRFKGLGEMNPIQLRETTMDPN 583

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            R L+++ +    ++       +NK    +A +R  +++ + +  +
Sbjct: 584 TRRLVQLTLGDQGDAEAIMDMMLNK---KRASDRKVWLETKGNLAE 626


>gi|307255152|ref|ZP_07536970.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307259589|ref|ZP_07541314.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306862025|gb|EFM94001.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866525|gb|EFM98388.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 637

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 251/650 (38%), Positives = 371/650 (57%), Gaps = 28/650 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y A  I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE ++GYA+ I+V L
Sbjct: 4   KRYGADEITVLKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALSGYASQIDVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V+DNGRG+PV+ H      S +E+I+T LHAGGKF N  Y  SGGLHGVGISV
Sbjct: 61  HTDNSLEVIDNGRGMPVDIHS-TEKISGVELIMTKLHAGGKFSNKNYTFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + + + R   I++  F  G+ +  L       + + GT + F P+PK F    
Sbjct: 120 VNALSQRVEIKIKRNGEIYTIAFENGVKVEELTVIGSCPKKQTGTTVRFYPNPKYFDSPR 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F A+RL  + ++KA L  ++   +         +     E +Y+  GL  YL   L+  
Sbjct: 180 -FSASRLRHLLRAKAVLCPKLTLNFVD-------HINNSSETWYYEDGLSDYLSETLKEF 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             + +  F G    +      V WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 ECLPNPPFIGDVTSETE---AVTWALTWLPEGGELLAESYVNLIPTAQGGTHVNGLRNGL 288

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
            + + ++ E+     +++ + +DD+      +LS+ I+EP+FAGQTK +L S  A   V+
Sbjct: 289 LKAMVEFCEIHNLLPKSVKLTADDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVD 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
           + ++D F  +L QN      + E  I  ++ RLR    ++V RK  +    LPGKLADC+
Sbjct: 349 STIKDAFSLWLNQNVQTGKLIAEMAISSAQSRLR--AAKKVVRKKLVSGPALPGKLADCT 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN     S+++  +Q++ D+ 
Sbjct: 407 SQDLSRTELFLVEGDSAGGSAKQARDKDYQAILPLRGKILNTWEVSSDQVLASQEVHDIA 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG    S    E+LRY KV I+ DAD DG HIA+LL   F +   +L++  H+++  P
Sbjct: 467 VALGIDPDSDSL-EELRYGKVCILADADSDGLHIATLLCALFLRHFPNLVKNGHVYVAMP 525

Query: 578 PLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PL+RI  G  +  YA DE  K+ IL    K  KGK  + RFKGLGEM  SQL+ET MD +
Sbjct: 526 PLYRIDIGKDEVHYALDEAEKEAILARLAKK-KGKPNVQRFKGLGEMNPSQLRETTMDPS 584

Query: 637 KRTLLRVEINK---DLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++ +++      +  +T + ++ L+  K A++R ++++ R    +
Sbjct: 585 TRRLVQLTLDELDVAEENEPNTFEIMDMLLAKKRAEDRKQWLRNRGDEAE 634


>gi|78707335|gb|ABB46474.1| DNA gyrase subunit B [Acholeplasma axanthum]
 gi|78707337|gb|ABB46475.1| DNA gyrase subunit B [Acholeplasma axanthum]
 gi|78707339|gb|ABB46476.1| DNA gyrase subunit B [Acholeplasma axanthum]
          Length = 589

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 241/607 (39%), Positives = 340/607 (56%), Gaps = 22/607 (3%)

Query: 58  VRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIP 117
           VR RPGMYIG T    LHHL  E++DN++DE +AGYA+ I + L     + V DNGRGIP
Sbjct: 1   VRKRPGMYIGTTGADGLHHLVWEIVDNSIDEALAGYADDIILELLPGEVVRVTDNGRGIP 60

Query: 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN 177
           V+ HP    +  +E ILTTLHAGGKFD+ +Y++SGGLHGVG SVVNALS+   V V R N
Sbjct: 61  VDIHP-HTGRPAVETILTTLHAGGKFDSDSYKVSGGLHGVGASVVNALSEWYTVNVHRNN 119

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
             + Q ++RGIP   L +K  +    GT   F+ DP IF +   +D  RL +  Q  A+L
Sbjct: 120 KNYYQMYNRGIPAGDLIEKG-LSEHTGTITEFKFDPTIFKETQEYDFERLRQRIQQLAFL 178

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +K      +  A          +++ GGL  Y +    NR  ++  +F  +      
Sbjct: 179 NRGIKITIKDLRTEAVVENT-----YHYEGGLVEYAEFLNGNRVKVNKSLFYVEKMVDDI 233

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
               VE  + + +     I S+ N I T EGG HE G ++ALTR +  YA+  +  +   
Sbjct: 234 ---NVEITMQYNDSFNQNIYSFTNNIPTREGGMHEDGFKMALTRILNNYAKANKMLKDTE 290

Query: 357 --IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
              I +D     + ILSV   +P+F GQTKTKL + + ++ V   L +  D +L++NP +
Sbjct: 291 DGFIGEDTREGLIVILSVKHPDPQFEGQTKTKLGNTEVRQIVSQILSEGLDRFLLENPQD 350

Query: 415 ATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  +++ VI  +      R+ +    RK  +  L    KLADC    A   EL+IVEGDS
Sbjct: 351 AKAIIDKVILAQRARVAARKAREATRRKNPLDSLGFASKLADCRTKNAEKAELYIVEGDS 410

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAKQ R    QA+LPLRGK+LNV  A  +KI +N +I+ L QA+G     +      
Sbjct: 411 AGGSAKQGRESEYQAILPLRGKVLNVEKARLDKILSNNEILMLFQAIGTGIGDELDPSKA 470

Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHD 593
           RY K++IMTDADVDGAHI +LLLTFFY+ +  LI+  +++   PPL++++ G +  Y +D
Sbjct: 471 RYHKIVIMTDADVDGAHIRTLLLTFFYRHLRPLIDLGYIYFAQPPLYKLSSGKRIEYVYD 530

Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
           +E     L E      G+ ++ R+KGLGEM   QL ET MD   RTLLRV +   +    
Sbjct: 531 DE----ALPEIAATFDGRYQMQRYKGLGEMNPEQLWETTMDPETRTLLRVTLKDAM---- 582

Query: 654 DTQDSIN 660
           D     +
Sbjct: 583 DADQVFS 589


>gi|78707333|gb|ABB46473.1| DNA gyrase subunit B [Acholeplasma axanthum]
          Length = 589

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 240/607 (39%), Positives = 340/607 (56%), Gaps = 22/607 (3%)

Query: 58  VRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIP 117
           VR RPGMYIG T    LHHL  E++DN++DE +AGYA+ I + L     + V DNGRGIP
Sbjct: 1   VRKRPGMYIGTTGTDGLHHLVWEIVDNSIDEALAGYADDIILELLPGEVVRVTDNGRGIP 60

Query: 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN 177
           V+ HP    +  +E ILTTLHAGGKFD+ +Y++SGGLHGVG SVVNALS+   V V R N
Sbjct: 61  VDIHP-HTGRPAVETILTTLHAGGKFDSDSYKVSGGLHGVGASVVNALSEWYTVNVHRNN 119

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
             + Q ++RGIP   L +K  +    GT   F+ DP IF +   +D  RL +  Q  A+L
Sbjct: 120 KNYYQMYNRGIPAGDLIEKG-LSEHTGTITEFKFDPTIFKETQEYDFERLRQRIQQLAFL 178

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +K      +  A          +++ GGL  Y +    NR  ++  +F  +      
Sbjct: 179 NRGIKITIKDLRTEAVVENT-----YHYEGGLVEYAEFLNGNRVKVNKSLFYVEKMVDDI 233

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
               VE  + + +     I S+ N I T EGG HE G ++ALTR +  YA+  +  +   
Sbjct: 234 ---NVEITMQYNDSFNQNIYSFTNNIPTREGGMHEDGFKMALTRILNNYAKANKMLKDTE 290

Query: 357 --IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
              I +D     + ILSV   +P+F GQTKTKL + + ++ V   L +  D +L++NP +
Sbjct: 291 DGFIGEDTREGLIVILSVKHPDPQFEGQTKTKLGNTEVRQIVSQILSEGLDRFLLENPQD 350

Query: 415 ATKLLEWV-IERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  +++ V + +      R+ +    RK  +  L    KLADC    A   EL+IVEGDS
Sbjct: 351 AKAIIDKVVLAQRARVAARKAREATRRKNPLDSLGFASKLADCRTKNAEKAELYIVEGDS 410

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAKQ R    QA+LPLRGK+LNV  A  +KI +N +I+ L QA+G     +      
Sbjct: 411 AGGSAKQGRESEYQAILPLRGKVLNVEKARLDKILSNNEILMLFQAIGSGIGDELDPSKA 470

Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHD 593
           RY K++IMTDADVDGAHI +LLLTFFY+ +  LI+  +++   PPL++++ G +  Y +D
Sbjct: 471 RYHKIVIMTDADVDGAHIRTLLLTFFYRHLRPLIDLGYIYFAQPPLYKLSSGKRIEYVYD 530

Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
           +E     L E      G+ ++ R+KGLGEM   QL ET MD   RTLLRV +   +    
Sbjct: 531 DE----ALPEIAATFDGRYQMQRYKGLGEMNPEQLWETTMDPETRTLLRVTLKDAM---- 582

Query: 654 DTQDSIN 660
           D     +
Sbjct: 583 DADQVFS 589


>gi|282862334|ref|ZP_06271396.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces sp. ACTE]
 gi|282562673|gb|EFB68213.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces sp. ACTE]
          Length = 708

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 244/709 (34%), Positives = 351/709 (49%), Gaps = 53/709 (7%)

Query: 20  SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79
                       + A      S NY A  + +LEGLE VR RPGMYIG TD + L H   
Sbjct: 1   MTADSVPSTALLTGAGGADRESSNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLW 60

Query: 80  EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139
           E+IDN++DE + GY + IEV L  +  + V DNGRGIPV+  PK    S +E+++T LHA
Sbjct: 61  EIIDNSVDEALGGYCDAIEVILHDDASVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHA 119

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKF   +Y  SGGLHGVG SVVNALS  L V V R +T  S  F RG+P    E+    
Sbjct: 120 GGKFGGGSYAASGGLHGVGASVVNALSARLDVEVDRNSTTHSISFRRGVPGMFTEQGPDS 179

Query: 200 ---------------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244
                          + + GTR+ +  D +IF   A  D   L +  +  A+L   +   
Sbjct: 180 PFDPANGLRKGKRIPKTRTGTRVRYWADRQIFLKDAKLDLETLYQRARQTAFLVPGLTIV 239

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------- 293
              ++ I  +      E F F GG+  + +   +++++   +  TG              
Sbjct: 240 VRDERGINGEGKTE--ETFRFDGGISEFCEYLAQDKAVCDVQRLTGTGTFKETVPVLDDR 297

Query: 294 -----KKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
                 + T    V+ A+ W         S+ N I T +GGTH SG   +LT+ + +   
Sbjct: 298 GHMTATEVTRELGVDIALRWGTGYDTTVRSFVNIIATPKGGTHVSGFERSLTKTVNEALR 357

Query: 348 LTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
            T+  R        DD +     +++V + EP+F GQTK  L +  A R V N +     
Sbjct: 358 STKLLRVAEDDVVKDDALEGLTAVVTVRLAEPQFEGQTKEVLGTSAANRIVANVVAKELK 417

Query: 406 HYLVQNPIEATKLLEWVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
            +L     +A      V+++           R+ +    RKTA+    LP KLADC  + 
Sbjct: 418 AFLTSTKRDAKAQARAVLDKAVAAARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDD 477

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +ELFIVEGDSA G+AK ARN   QA+LP+RGKILNV  +    +  N +   ++Q +
Sbjct: 478 VERSELFIVEGDSALGTAKLARNSEFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVI 537

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           G  +   +  +  RY KVI+MTDADVDG+HI +LLLT F + M  ++E   +F   PPL 
Sbjct: 538 GAGSGRTFDIDAARYGKVIMMTDADVDGSHIRTLLLTLFQRYMRPMVEAGRVFAAVPPLH 597

Query: 581 RI-----TQGT-KSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAM 633
           RI      +G  K +Y + +   ++ L E  +K+ + K  I R+KGLGEM A QL ET M
Sbjct: 598 RIELVQPKKGQDKYIYTYSDNELRQTLLELQRKNVRVKDSIQRYKGLGEMDADQLAETTM 657

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           D   RTL R+ I      L+ ++   + LMG +   R +FI   A+ +D
Sbjct: 658 DPRHRTLRRINIGD----LESSEQVFDLLMGNEVAPRKEFITSSAATLD 702


>gi|54307668|ref|YP_128688.1| DNA topoisomerase IV subunit B [Photobacterium profundum SS9]
 gi|46912091|emb|CAG18886.1| putative topoisomerase IV, subunit B [Photobacterium profundum SS9]
          Length = 627

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 254/647 (39%), Positives = 364/647 (56%), Gaps = 26/647 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
              +Y+A SI +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  +EV
Sbjct: 2   TEQSYNAGSIEVLNGLEPVRRRPGMY---TDTARPNHLGQEVIDNSVDEALAGHARKVEV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +  L V+D+GRG+PV+ HP     S +E+IL  LHAGGKF N +Y+ SGGLHGVGI
Sbjct: 59  ILYADQSLEVIDDGRGMPVDIHP-VEGVSGVELILCKLHAGGKFSNDSYQFSGGLHGVGI 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS  + V+V R   I+   F  G  +S LE      R  +GTR+ F PD   + D
Sbjct: 118 SVVNALSKRVEVSVKRDGQIYQIAFEHGDKVSELEVIGTCGRRAKGTRVHFWPDA-RYFD 176

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
            A F   RL  + ++KA L   ++  ++            E   + +  GLK YL   ++
Sbjct: 177 NAKFSVTRLKSVLKAKAVLCPGLEIVFTDK-------IADETIRWCYEDGLKDYLLEGVK 229

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336
             +L+  E F G      +     +WA+ W  E  E    SY N I T +GGTH +GLR 
Sbjct: 230 GYTLLPEEPFIGVF---TSQIEAADWALLWLPEGGELITESYVNLIPTAQGGTHVNGLRQ 286

Query: 337 ALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            L   ++++ E      R + + +DD+      +LSV +++P+FAGQTK +L S      
Sbjct: 287 GLLDAMREFCEFRNLLPRGVKLTADDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 346

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           V   ++D F  +L + P  A +L E  I  +  R+R    ++V RK       LPGKLAD
Sbjct: 347 VSGVVKDAFSLWLNERPQLAEQLAEVCIANAHRRMR--ASKKVVRKKIASGPTLPGKLAD 404

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CSQ   + TELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     ++++  +Q++ +
Sbjct: 405 CSQQDLNRTELFLVEGDSAGGSAKQARDRMFQAIMPLRGKILNTWEVSADQVLASQEVHN 464

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  ALG    S      LRY K+ ++ DAD DG HIA+LL   F +    L+   H+++ 
Sbjct: 465 ISIALGIDPDSDDL-SGLRYGKICVLADADSDGLHIATLLCALFMKHFEALVRAGHVYIA 523

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+RI    +  YA DE  K  IL+      +GK+ + RFKGLGEM   QL+ET MD 
Sbjct: 524 MPPLYRIDLAKEVYYALDEAEKNGILDRLSTK-RGKVNVQRFKGLGEMNPLQLRETTMDP 582

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           N R L+++ I+ D  + +     +NK    +A++R  ++Q++    D
Sbjct: 583 NTRRLVQLTIDDDEKTNEMMDMLLNK---KRAEDRRFWLQDKGDMAD 626


>gi|294155351|ref|YP_003559735.1| DNA topoisomerase IV, B subunit [Mycoplasma crocodyli MP145]
 gi|291600024|gb|ADE19520.1| DNA topoisomerase IV, B subunit [Mycoplasma crocodyli MP145]
          Length = 640

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 233/650 (35%), Positives = 342/650 (52%), Gaps = 31/650 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ Y A +I  L+GLE VR RPGMYIG TD   LHHL  E++DN++DE +AGYAN I 
Sbjct: 3   ADNNTYTAKNITQLKGLEAVRKRPGMYIGSTDVNGLHHLVWEIVDNSIDESLAGYANKII 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           ++L  +G + + DNGRGIPV        +S +E++ T LHAGGKF+   Y+ SGGLHGVG
Sbjct: 63  LTLKEDGSVIIEDNGRGIPVGKVDAT--RSAVELVFTELHAGGKFNEGAYKTSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS +L VTV R    +  +F +   +    K    R   GT + F PD   F  
Sbjct: 121 SSVVNALSTKLMVTVYRDGFEYLTEFKQDKIIQKTHKVGPTRKV-GTIVQFWPDYD-FFK 178

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
           +A  +   + +  +  ++L   ++     +K  +E       E F    G+  +L    +
Sbjct: 179 QAKLNYEVISERLKESSFLISGLEIKIIDEKTKSE-------EIFKHVDGIAAFLGFLND 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
           +++ I+  I     +K+       ++  ++   N  I S+ N + T +GGTHE+GL+ AL
Sbjct: 232 SKNAITQPITFSDVKKEIEVDFGFQYTDSY---NELIVSFVNNVKTRDGGTHETGLKTAL 288

Query: 339 TRGIKKYAELTQNKRAIS-IISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQRT 395
           T+    +       +  +     D+      ILS+ +     EF GQTK KL + +A+  
Sbjct: 289 TKVFNDFGTDEGVLKNRNVFDPSDIREGLTVILSLKVPEKHLEFVGQTKDKLGTPEAKNI 348

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA---IRKLRLPGK 452
           VE  +      ++ +N   A K+LE +    E R   +KQR+  RKT      K  L  K
Sbjct: 349 VEELVTKHLKLWIAENKQLAKKVLEKIKRAYEIRNEEKKQRQELRKTKSILKDKPILSDK 408

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L           ELF+VEGDSAGGSAK  R+R  QA+LPLRGK++NV  +    I  N +
Sbjct: 409 LTPAQSKKPEEKELFLVEGDSAGGSAKSGRDRRYQAILPLRGKVINVEKSKLIDILKNTE 468

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++ ++G     ++     +Y K+IIMTDAD DGAHI  LLLTF Y+ M  LIE   +
Sbjct: 469 IGTIINSIGAGYGKEFDLTKAQYGKIIIMTDADTDGAHIQILLLTFLYRYMKPLIEDGRV 528

Query: 573 FLISPPLFRITQGTK--SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           F+  PPL++    +K  S YA DE   + I+ +      G  EI R+KGLGEM A QL E
Sbjct: 529 FIALPPLYKALNKSKNVSKYAWDELELKAIISKA-----GSWEIQRYKGLGEMNADQLWE 583

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           T M+   R++++V I+    S    +  ++ LMG  A  R  +I     F
Sbjct: 584 TTMNPETRSIVKVTIDDITLS----ERRVSTLMGNNASLRKNWIDRHVDF 629


>gi|223041848|ref|ZP_03612036.1| DNA topoisomerase IV subunit B [Actinobacillus minor 202]
 gi|223017341|gb|EEF15764.1| DNA topoisomerase IV subunit B [Actinobacillus minor 202]
          Length = 636

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 251/649 (38%), Positives = 371/649 (57%), Gaps = 27/649 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y A  I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE ++GYA  I+V L
Sbjct: 4   KRYGADEITVLKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALSGYATQIDVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V+DNGRG+PV+ H      S +E+ILT LHAGGKF N  Y  SGGLHGVGISV
Sbjct: 61  HKDNSLEVIDNGRGMPVDIHS-TEKMSGVELILTKLHAGGKFSNKNYTFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS+ + +T+ R   I++  F+ G+ +  L       + + GT + F P+PK F    
Sbjct: 120 VNALSERVEITIKRNGEIYTIAFANGVKVEDLTVVGSCPKRQTGTTVRFYPNPKYFDSP- 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L  ++   ++             +E +Y+  GL  YL   L+  
Sbjct: 179 KFSVSRLRHLLKAKAVLCPKLTINFTDK-------INDTQESWYYEDGLSDYLSEALKEY 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             + +  F G    +      V WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 EYLPNPPFIGDVTSETE---AVSWALTWLPEGGELLAESYVNLIPTAQGGTHVNGLRNGL 288

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
            + + ++ E+     + I + +DD+      +LS+ I+EP+FAGQTK +L S  A   V+
Sbjct: 289 LKAMTEFCEIHNLLPKGIKLTADDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVD 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
           + ++D F  +L QN      L E  I  ++ RLR    ++V RK  +    LPGKLADC+
Sbjct: 349 STIKDAFSLWLNQNVQIGKTLAELAISSAQSRLR--AAKKVVRKKLVSGPALPGKLADCT 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN     S+++  +Q++ D+ 
Sbjct: 407 SQDLSRTELFLVEGDSAGGSAKQARDKEYQAILPLRGKILNTWEVSSDQVLASQEVHDIA 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    +    ++LRY KV I+ DAD DG HIA+LL   F +   +L++  H+++  P
Sbjct: 467 IAMGIDPDNDNL-DELRYGKVCILADADSDGLHIATLLCALFLRHFPNLVKNGHVYVAMP 525

Query: 578 PLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PL+RI  G  +  YA DE+ K+ IL    K  KGK  + RFKGLGEM  SQL+ET MD +
Sbjct: 526 PLYRIDIGKDEVHYALDEDEKEAILARLAKK-KGKPNVQRFKGLGEMNPSQLRETTMDPS 584

Query: 637 KRTLLRVEI--NKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            R L+++     ++      T + ++ L+  K +++R +++Q R +  +
Sbjct: 585 TRRLVQLTFEEREEDEQESHTFELMDMLLAKKRSEDRKQWLQNRGNEAE 633


>gi|53805052|ref|YP_113319.1| DNA topoisomerase IV subunit B [Methylococcus capsulatus str. Bath]
 gi|53758813|gb|AAU93104.1| DNA topoisomerase IV, B subunit [Methylococcus capsulatus str.
           Bath]
          Length = 628

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 259/647 (40%), Positives = 371/647 (57%), Gaps = 28/647 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + YDAS+I +L GL+PVR RPGMY   TD     HL  EVIDNA+DE +AG+A LIE+ L
Sbjct: 3   EVYDASAIEVLSGLDPVRRRPGMY---TDTTRPDHLAQEVIDNAVDEALAGFARLIEIRL 59

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G L V D+GRG+PV+ HP+    S +E+ILT LHAGGKF    Y  SGGLHGVG+SV
Sbjct: 60  LADGGLEVRDDGRGMPVDIHPEL-GVSGVEVILTRLHAGGKFSRKAYRYSGGLHGVGVSV 118

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPDPKIFGDKA 220
           VNALS  L V V R   + +  F +G  +  L +      +  GT + F P+   F +  
Sbjct: 119 VNALSLRLEVEVRRDGKVHAIAFEKGEKVGDLTETGTTPRRATGTTVRFWPEAHYFDNAR 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L   ++   + D          E E + +  GL  YL  +L+  
Sbjct: 179 -FSRSRLKHLLRAKAVLCPGLEIRMTDD-------ASGETETWCYRNGLPQYLLDQLQGC 230

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN--PEITSYCNTILTDEGGTHESGLRVAL 338
           + I  E FTG  E     +  VEWA+ WC E   P   SY N + T +GGTH +GLR  L
Sbjct: 231 ACIPDEPFTGAMEG---RQEAVEWAVLWCPEGAAPVAESYVNLVPTVQGGTHVNGLRTGL 287

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           T  ++++ E      R I I+ DD+      +LSV ++EP+FAGQTK +L S +    V 
Sbjct: 288 TEAVREFCEYRNLLPRGIKIVPDDVWERCNHVLSVKMQEPQFAGQTKERLNSRECASFVS 347

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             ++D F  +L Q+P    ++ E VIE +++RLR    R V RK       LPGKLADC+
Sbjct: 348 GVVKDAFSLWLNQHPAVGERIAELVIESAQKRLR--AARRVTRKKVSSGPALPGKLADCA 405

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
               + TELF+VEGDSAGGSAKQAR++  QA++PLRGKILN     S  I  +Q++ D+ 
Sbjct: 406 AQDVNRTELFLVEGDSAGGSAKQARDKDFQAIMPLRGKILNTWEVESGAILASQEVHDIS 465

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    +      LRY K+ ++ DAD DG HIA+LL   F +    L++  H+F+  P
Sbjct: 466 LAIGVDPGATDL-SGLRYGKICVLADADSDGNHIATLLCALFLRHFRALVKAGHVFIAMP 524

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDAN 636
           PL+RI  G +  YA DE  K+ +L+  +    KGK+ + RFKGLGEM   QL+ET M+ +
Sbjct: 525 PLYRIDVGKQVYYALDEAEKKGVLDRIEAEKIKGKVNVLRFKGLGEMNPVQLRETTMNPD 584

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQERASFID 682
            R L+++ ++        T + ++ L+   +A +R  +++E+ +  D
Sbjct: 585 TRRLVQLSLDD----AAATDERLDMLLAKRRAGDRRVWLEEKGNLAD 627


>gi|254448183|ref|ZP_05061646.1| DNA topoisomerase IV, B subunit [gamma proteobacterium HTCC5015]
 gi|198262309|gb|EDY86591.1| DNA topoisomerase IV, B subunit [gamma proteobacterium HTCC5015]
          Length = 629

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 250/646 (38%), Positives = 362/646 (56%), Gaps = 28/646 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y AS I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AG+A  IEV L 
Sbjct: 3   DYKASDIEVLSGLDPVKKRPGMY---TDTTRPNHLAQEVIDNSVDEAMAGHAKKIEVVLY 59

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G L V D+GRG+PV+ HP+      +E+ILT LHAGGKF N  Y  SGGLHGVGISVV
Sbjct: 60  KDGSLEVSDDGRGMPVDIHPEQ-GVPGVELILTRLHAGGKFSNKNYAFSGGLHGVGISVV 118

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221
           NAL+  L V + R   +    FS G   S L   + V +   GT + F  DP+ F     
Sbjct: 119 NALTSRLDVHIKRDGKLHHIAFSAGEKTSDLTVVDSVGQRNTGTTVRFWADPQYFDSD-K 177

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +   RL  + ++KA L   +   +  +K   +         + +  GL  YL   L+   
Sbjct: 178 YSLPRLRHLLRAKAVLCPGLMVRFKDEKSGDKNE-------WCYKDGLNDYLLEALQGWE 230

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALT 339
           L+  ++FTG    +   +  V+WA+ W  E  E    SY N I T +GGTH +GLR  LT
Sbjct: 231 LLPPDLFTGHLSSE---KEAVDWALTWLPEGGEPVQESYVNLIPTPQGGTHVNGLRTGLT 287

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             I+++ E      R + I  +D+      ++S+ +++P+FAGQTK +L S ++   V  
Sbjct: 288 EAIREFCEFRNLLPRGVKITPEDVWDKISYVISLKMQDPQFAGQTKERLSSRESAAFVSG 347

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  YL QN      L +  I  ++ RLR    ++V RK       LPGKLADC+ 
Sbjct: 348 VVKDAFSLYLNQNADTGEALAQMAITSAQRRLR--SAKKVVRKKVTSGPALPGKLADCTS 405

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
           +    TELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN      +++  +Q++ D+  
Sbjct: 406 SDPAMTELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVEPDQVLASQEVHDISI 465

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG    S      LRY KV I+ DAD DGAHIA+LL   F +    L+E  H++L  PP
Sbjct: 466 ALGIEPGSTDL-GKLRYGKVCILADADSDGAHIATLLCALFLRHFPALVEGGHVYLAMPP 524

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFK-KHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           L+RI  G +  YA DE  ++ IL+  + +  KGK+  +RFKGLGEM  +QL+ET++  + 
Sbjct: 525 LYRIDVGKQVYYAVDEPERRGILDRIEAEKKKGKVTTTRFKGLGEMNPAQLRETSIHPDT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+R+ +     +        + L+  K + +R ++++ +    D
Sbjct: 585 RRLVRLTVE----ASDSAHSVFDMLLAKKRSGDRKQWLESKGDLAD 626


>gi|329940010|ref|ZP_08289292.1| DNA topoisomerase IV subunit B [Streptomyces griseoaurantiacus
           M045]
 gi|329300836|gb|EGG44732.1| DNA topoisomerase IV subunit B [Streptomyces griseoaurantiacus
           M045]
          Length = 707

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 239/706 (33%), Positives = 347/706 (49%), Gaps = 52/706 (7%)

Query: 23  LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82
             ++     +          NY A  + +LEGLE VR RPGMYIG TD + L H   E+I
Sbjct: 2   TAETSVPSTALLTGADRDGSNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEII 61

Query: 83  DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142
           DN++DE + G+ + IEV L  +G + V DNGRGIPV+  PK    S +E+++T LHAGGK
Sbjct: 62  DNSVDESLGGHCDHIEVVLHDDGSVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHAGGK 120

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP---------- 192
           F   +Y  SGGLHGVG SVVNALS  L V V R     +  F RG+P +           
Sbjct: 121 FGGGSYAASGGLHGVGASVVNALSARLDVEVDRNGHTHAVSFRRGVPGAFTGAGPDAKFE 180

Query: 193 -----LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247
                 + K+  +++ GTR+ +  D +IF   A      L +  +  A+L   +      
Sbjct: 181 AGGGLRKTKKIPKSRVGTRVRYWADRQIFLKDAKLSLETLHQRARQTAFLVPGLTIVVRD 240

Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-------------- 293
           +  + E     E E F F GG+  + +    +R +     FTG+                
Sbjct: 241 EYGLGEGGSKGE-ESFRFDGGISEFCEYLATDRPVCDVLRFTGQGTFKETVPVLGEDGQM 299

Query: 294 --KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
                     V+ A+ W       + S+ N I T +GGTH +G   A+ R   +     +
Sbjct: 300 TPTDVVRELGVDVALRWGTGYDSAVRSFVNIIATPKGGTHVAGFEQAVARTFNEVLRAKK 359

Query: 351 NKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
             R        DD +     +++V + EP+F GQTK  L +  A+R V N +      +L
Sbjct: 360 LLRVAEDDIVKDDALEGLTAVVTVRLAEPQFEGQTKEVLGTSAARRIVANVVSKELKAFL 419

Query: 409 VQNPIEATKLLEWVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHG 463
                +A      V+E+           R+ +    RKTA+    LP KLADC  +    
Sbjct: 420 TSTKRDAAAQARVVMEKAVAAARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDDVGR 479

Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523
           +ELFIVEGDSA G+AK ARN   QA+LP+RGKILNV  +    +  N +   ++Q +G  
Sbjct: 480 SELFIVEGDSALGTAKLARNSEFQALLPIRGKILNVQKSSVTDMLKNAECGAIIQVIGAG 539

Query: 524 TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI- 582
           +   +  +  RY K+I+MTDADVDG+HI +LLLT F++ M  ++E   +F   PPL RI 
Sbjct: 540 SGRTFDIDTARYGKIIMMTDADVDGSHIRTLLLTLFHRYMRPMVEAGRVFAAVPPLHRIE 599

Query: 583 ----TQGT-KSVYAHDEEH-KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
                +G  K VY + +   + ++LE   K+ + K  I R+KGLGEM A QL ET MD  
Sbjct: 600 LVQPKKGQDKYVYTYSDRELRDRLLEFQSKNIRYKDSIQRYKGLGEMDADQLAETTMDPR 659

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            RTL R+ +      L+  +   + LMG     R +FI   A+ +D
Sbjct: 660 HRTLRRINLTD----LEAAETVFDLLMGNDVAPRKEFISSSAATLD 701


>gi|152999325|ref|YP_001365006.1| DNA topoisomerase IV subunit B [Shewanella baltica OS185]
 gi|151363943|gb|ABS06943.1| DNA topoisomerase IV, B subunit [Shewanella baltica OS185]
          Length = 628

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 251/647 (38%), Positives = 360/647 (55%), Gaps = 28/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y + +I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AG+A  IEV 
Sbjct: 2   TNQYTSDAIEVLNGLDPVKRRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHATKIEVV 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V D+GRG+PV+ H +      +E+ILT LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHTDNSLEVTDDGRGMPVDIHLE-EGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + VTV R   ++   F  G  +  L       R   GTR+ F PD   F   
Sbjct: 118 VVNALSRRVEVTVRRDGQVYDIAFENGFKVEELRPTGTCGRRNTGTRVHFWPDASYFDSA 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  ++L+ + ++KA L   ++  ++            E  E+++  GL  YL+  + +
Sbjct: 178 N-FSNSKLIYLLRAKAVLCPGLRIKFTNK-------QTNEVHEWFYESGLTDYLKAAIGD 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVA 337
              +  E F G  +         +WAI W  E  E    SY N I T  GGTH +G R  
Sbjct: 230 NLRLPDEPFVGCFKG---QLEAADWAITWLPEGGESIGESYVNLIPTPLGGTHVNGFRQG 286

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R I +  +D+   A  ILSV ++EP+FAGQTK KL S      V
Sbjct: 287 LLESMREFCEFRNLIPRGIKLSPEDIWDRAAFILSVKMQEPQFAGQTKEKLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              +RD F  +L  N   A  L E  I  ++ RL+  K  +V RK       LPGKL DC
Sbjct: 347 SGVVRDAFSLWLNSNTELAESLAEMCINNAQSRLKAAK--KVARKKVTSGPALPGKLTDC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S       ELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     + ++  +Q++ D+
Sbjct: 405 SGQDPMRGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+GC   S     +LRY K+ I+ DAD DG HIA+LL   F +    L+EQ H+++  
Sbjct: 465 SVAIGCDPDSSDI-SELRYGKICILADADSDGLHIATLLCALFLKHYRILVEQGHVYIAM 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
           PPLFRI  G +  YA DE  +  IL+    ++ KGK++++RFKGLGEM   QL+ET MD 
Sbjct: 524 PPLFRIDIGKEVYYALDEAERAGILDRIAAENKKGKVQVTRFKGLGEMNPLQLRETTMDP 583

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFI 681
           N R L+++ I+     +++T   ++ L+  K + +R  +++++    
Sbjct: 584 NTRRLVQLTIDD----IEETDALMDMLLAKKRSPDRKNWLEDKGDMA 626


>gi|221133993|ref|ZP_03560298.1| DNA topoisomerase IV subunit B [Glaciecola sp. HTCC2999]
          Length = 630

 Score =  537 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 243/644 (37%), Positives = 354/644 (54%), Gaps = 21/644 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S+ Y++ +I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AG+A+ I+V 
Sbjct: 2   SEQYNSDAIEVLNGLDPVKRRPGMY---TDTTRPNHLSQEVIDNSVDEALAGHASSIKVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+    S +E+I+T LHAGGKF N  YE SGGLHGVGIS
Sbjct: 59  LHDDQSLEVIDDGRGMPVDIHPE-EKISGVELIMTKLHAGGKFSNKNYEFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + VT+ R   +    F+ G  +S L   +   +   GT + F PD   F   
Sbjct: 118 VVNALSKRVEVTIRRDAQVHQIVFANGDKISELAVIDTCGKRNTGTSVHFWPDASYFDSG 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F   +LL + ++KA L   ++  +       +     E  E+Y+  GL+ YL   ++ 
Sbjct: 178 N-FSVRQLLHVLRAKAVLCPGLRIRF-------DNKISKETTEWYYEDGLRDYLYDSVKE 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
              + ++                         +    SY N I T +GGTH +GLR  L 
Sbjct: 230 FETLPTDEPFVGAYSGNHEAADWAVMWLPEGGDMVTESYVNLIPTAQGGTHVNGLRQGLL 289

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R + +  DD+      ILS  +++P+FAGQTK +L S  A   V  
Sbjct: 290 ESMREFCEFRNLLPRGVKLSPDDIWDRCSYILSTKMQDPQFAGQTKERLSSRQAAAFVSG 349

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L Q+   A  L E  I  +++RLR+   ++V RK   +   LPGKL DCS 
Sbjct: 350 IVKDAFSLWLNQHTDIAELLAEMCINNAQKRLRQT--KKVARKKVTQGPALPGKLTDCSS 407

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +ELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     S ++  +Q+I D+  
Sbjct: 408 QDNSRSELFLVEGDSAGGSAKQARDREIQAIMPLRGKILNSWEVDSSQVLASQEIHDISV 467

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG    S+     LRY K+ I+ DAD DG HIA+LL   F +    L+EQ H+++  PP
Sbjct: 468 ALGIDPDSEDL-SGLRYGKICILADADSDGLHIATLLCALFVKHFRTLVEQGHVYVAMPP 526

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANK 637
           LFRI  G +  YA DE  KQ IL+  +   K GK+ + RFKGLGEM   QL+ET MD N 
Sbjct: 527 LFRIDIGKEVYYALDESEKQGILDRIEAENKRGKVNVQRFKGLGEMNPLQLRETTMDPNT 586

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           R L+++ +      L+        L   ++ +R  +++ + +  
Sbjct: 587 RRLVQLTVGDAEQMLELMDML---LAKKRSGDRKVWLESKGNLA 627


>gi|262277071|ref|ZP_06054864.1| DNA topoisomerase IV, B subunit [alpha proteobacterium HIMB114]
 gi|262224174|gb|EEY74633.1| DNA topoisomerase IV, B subunit [alpha proteobacterium HIMB114]
          Length = 646

 Score =  537 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 294/643 (45%), Positives = 415/643 (64%), Gaps = 7/643 (1%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + S  Y A  I +LEGL PVR RPGMYIGGTDE A HHL +E++DN++DE +AGYA  I 
Sbjct: 2   AISKTYSAKDIEVLEGLAPVRKRPGMYIGGTDETAYHHLANEILDNSIDEAVAGYAKEIV 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           + L     + + D+GRGIP++ HPK   K+ LE+++TTLH+GGKF++S Y+ S GLHGVG
Sbjct: 62  IKLVNKNTIIISDDGRGIPIDKHPK-KKKTALEVVMTTLHSGGKFNDSVYKSSAGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS +L++ V + + I+SQ +S+G  L+ L+ K K + K GT+ITF PDP+IFG 
Sbjct: 121 LSVVNALSSKLNIQVTKSSKIYSQDYSKGKILNKLKTKGKNKIKNGTQITFSPDPEIFGK 180

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI-AEKYGIPEKEEFYFPGGLKTYLQTKL 277
              F   ++ ++ ++KAYL   +K  W C+K++   K  +P KE   F  GL+ +L+ ++
Sbjct: 181 DVNFKPEKIYELAKNKAYLQKGIKISWECNKDLLNRKSSVPSKETLLFSKGLEDFLKNEI 240

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRV 336
              +++  ++       +   +G +E+A+ +  E+     ++CNT+    GGTH++G R 
Sbjct: 241 NQNNVLHEKVSFQSGNLED-KKGKIEFALQFNKEKIKYNKAFCNTVYNMNGGTHDAGFRS 299

Query: 337 ALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
            + + I+KYA+   NK       DD+   A  I+SV+I  PEF GQTK KL S   Q+  
Sbjct: 300 GIAKSIRKYAKNKNNKIVSKATQDDIFDQAAYIISVYISNPEFEGQTKHKLSSNFVQKYC 359

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           ++     FD +L +N   A  +L  + E+  E+      + V R++A RK+RLPGKL+DC
Sbjct: 360 DSFASSAFDEWLNRNSKAAKNILNVLEEKIREKNIYDLNQNVERQSAFRKIRLPGKLSDC 419

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           + +   GTELFIVEGDSAGGSAKQAR+R+ QA+LPLRGKILNV S+ + KI  N +I +L
Sbjct: 420 TSDKTEGTELFIVEGDSAGGSAKQARDRTTQAILPLRGKILNVKSSNAAKILANSEINNL 479

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           +QALGC     Y ++DLRYEK+IIMTDADVDG HI++LLLTFF  EM  LI   HL+L  
Sbjct: 480 LQALGCGRGKNYSKKDLRYEKIIIMTDADVDGDHISTLLLTFFISEMPQLILDGHLYLAV 539

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+++    KS YA DE  K K     K + K KIEISRFKGLGEM+ +QLKET M+  
Sbjct: 540 PPLYKLNISGKSTYAIDESEKNK---LLKDNKKAKIEISRFKGLGEMMPAQLKETTMNIE 596

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679
            R L++V +      +K T   ++ LMG  A+ R KFI E A+
Sbjct: 597 TRKLIKVVLPVQKPKMKKTNKLVSDLMGKNAELRLKFISENAN 639


>gi|114320108|ref|YP_741791.1| DNA topoisomerase IV subunit B [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226502|gb|ABI56301.1| DNA topoisomerase IV subunit B [Alkalilimnicola ehrlichii MLHE-1]
          Length = 630

 Score =  537 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 252/648 (38%), Positives = 371/648 (57%), Gaps = 28/648 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S+ YDA+ I +L GLEPVR RPGMY   TD    +HL  EVIDN++DEV+AG+A  ++V+
Sbjct: 2   SNRYDAADIEVLTGLEPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEVMAGHATRVDVT 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +G L V D+GRG+PV+ HP    +  +E+IL TLHAGGKF    Y+ SGGLHGVG+S
Sbjct: 59  LFRDGSLEVRDDGRGMPVDVHP-GQGRPGVEVILGTLHAGGKFSGKNYQYSGGLHGVGVS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  L V V R    +   F+ G   S L +  KV +   GT + F PD K F   
Sbjct: 118 VVNALSRRLEVRVRRGGIEYMMSFAHGEKTSELTEVGKVAKKDTGTLLRFWPDTKYFDSP 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F   R+  + ++KA L   +   +  +    E         + +  GLK YL   L+ 
Sbjct: 178 -KFSIPRMRHVLRAKAVLCPGLVVRFYDEAAEEETV-------WCYEDGLKDYLSGALQE 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              + +E F G+           EWA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 WQTLPTEPFIGRMSSD---HEAAEWAVTWLPEGGEAITESYVNLIPTAQGGTHVNGLRSG 286

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           LT  I+++ E      R + I  +D+      +LSV + +P+F+GQTK +L S +    V
Sbjct: 287 LTEAIREFCEFRNLLPRGVRITPEDVWERVSYVLSVKLEDPQFSGQTKERLSSRECATFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L Q+  +A  +++ +I  ++ R+R    R+V RK   +   LPGKLADC
Sbjct: 347 SGVVKDAFSLWLNQHVEDAEAIVQLIISAAQRRMR--ASRKVARKRVTQGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +      TELF+VEGDSAGGSAKQAR+R  QAV+PLRGKILN      +++  +Q++ D+
Sbjct: 405 AAQDPARTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVAPDEVMASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             ALG    S+ + + LRY K+ I+ DAD DGAHIA+LL   F +    L+   H+F+  
Sbjct: 465 AVALGTDPGSE-QLDGLRYGKICILADADPDGAHIATLLCALFLKHFPALVRAGHVFVAM 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDA 635
           PPL+RI  G ++ YA DE  +Q +L+       KGK+ ++RFKGLGEM   QL+ET M  
Sbjct: 524 PPLYRIDVGKQTFYALDEHERQGVLDRIAAEKLKGKVAVTRFKGLGEMNPLQLRETTMAP 583

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQERASFID 682
           + R L+++ ++      + T+  + +L+G   A +R ++++++ +  +
Sbjct: 584 DTRRLVQLMVDD----AEATEALMAQLLGKRNASQRRRWLEDKGNMAE 627


>gi|154508954|ref|ZP_02044596.1| hypothetical protein ACTODO_01470 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798588|gb|EDN81008.1| hypothetical protein ACTODO_01470 [Actinomyces odontolyticus ATCC
           17982]
          Length = 706

 Score =  537 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 232/702 (33%), Positives = 343/702 (48%), Gaps = 63/702 (8%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
             + + +Y+A  + +LEGLE VR RPGMYIG TD + L H   E+IDNA+DE + G+ + 
Sbjct: 6   TPTDASDYNARHLSVLEGLEAVRKRPGMYIGSTDHRGLMHCLWEIIDNAVDEALEGHCDT 65

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+V L  +   +V DNGRGIPV+  P     + +E++ T LHAGGKF   +Y  SGGLHG
Sbjct: 66  IDVRLHPDHSASVADNGRGIPVDIVP-GQGLTGVEVVYTKLHAGGKFGGGSYAASGGLHG 124

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL--------------------EKK 196
           VG SVVNALS  L V V R        F RG P                        +  
Sbjct: 125 VGASVVNALSARLDVQVDRGGKTHEMCFRRGEPGEFDDSKQRTPNSPFKPFVDGSTLKTV 184

Query: 197 EKVRN-KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
            KV+  + GTR+ F  D +IF    GF    LL   +  A+L   +      ++   E  
Sbjct: 185 GKVKKSQTGTRVRFWADFQIFPSTEGFSWENLLARARQTAFLVPGLTINCYDERGEEE-- 242

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR---------------- 299
                E F F GG+  +      +  +  +   TG+     T +                
Sbjct: 243 ---LHESFRFDGGVVDFANWLATDGPVTDTWHITGEGTYNETVQALDSETGHLRATEVER 299

Query: 300 -GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK----- 352
              V+ A+ W       + S+ N I T +GGTH +G   A+ + ++   +    K     
Sbjct: 300 TCEVDIALRWGIGYDTSVQSFVNIIATPKGGTHVTGFEQAVLKTLRAAIDKNARKLKVGA 359

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
           +      DD+      +++V   EP+F GQTK  L +   +  V   + D        + 
Sbjct: 360 KDGRPEKDDVQAGMTAVITVRFPEPQFEGQTKETLGTPQIRTVVNRVVSDWLKAKFASSK 419

Query: 413 IEATKL----LEWVIERSEERLRRRKQREVNR-KTAIRKLRLPGKLADCSQNIAHGTELF 467
            +  +     +E V+   + R+  R  +E++R K A+    LP KLADC       TELF
Sbjct: 420 RDDKQQTSLLMEKVVGEMKARVSARLHKEISRKKNALETSSLPAKLADCRLEDVEETELF 479

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           IVEGDSA G+AK ARN   QA+ P+RGKILNV  A +  +  N +  +++Q +G  +   
Sbjct: 480 IVEGDSALGTAKAARNSHYQALFPIRGKILNVQKASTADMLANAECANIIQVIGAGSGRT 539

Query: 528 YREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI----- 582
           +     RY KVI+MTDADVDGAHI +LLLT F++ M  ++E   ++   PPL RI     
Sbjct: 540 FDLSQARYGKVILMTDADVDGAHIRTLLLTLFFRYMRPMVEAGRIYAAVPPLHRIEVAGK 599

Query: 583 -TQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANKRTL 640
             +  + +Y + E+   + L   ++ G+  K  I R+KGLGEM A QL ET MD   R+L
Sbjct: 600 GRKKREYIYTYSEDELHRKLAALRRSGRTWKEPIQRYKGLGEMDADQLAETTMDRAHRSL 659

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            R+ +  +  +L+  +D    LMG+    R +FI E ++ +D
Sbjct: 660 RRITLADE-EALRQAEDVFELLMGSTVGPRKEFIVEESAGLD 700


>gi|182418445|ref|ZP_02949739.1| DNA gyrase subunit B [Clostridium butyricum 5521]
 gi|237666793|ref|ZP_04526778.1| DNA gyrase subunit B [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182377827|gb|EDT75371.1| DNA gyrase subunit B [Clostridium butyricum 5521]
 gi|237657992|gb|EEP55547.1| DNA gyrase subunit B [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 649

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 232/659 (35%), Positives = 350/659 (53%), Gaps = 36/659 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + YD + +  LE LEPVR+RPGMYIG T  K LHH   E+IDN++DE+  GY N + ++L
Sbjct: 7   NTYDVTDLTSLEKLEPVRVRPGMYIGSTGSKGLHHCIWEIIDNSIDEIANGYGNKVTITL 66

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +  +T++DNGRGIP   HP    KS +E++ T LH GGKFDN  Y+ SGGLHGVG +V
Sbjct: 67  NEDKSVTIIDNGRGIPTGIHP-IKKKSGVEMVYTELHTGGKFDNKNYKTSGGLHGVGAAV 125

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTRITFR 210
           VNALS  + V V +   I+ Q+F             G P++ LE   K  +K GT+ITFR
Sbjct: 126 VNALSKWVEVEVYQNGKIYRQRFEYAFDKELKRNMPGTPVTALEVIGKT-DKTGTKITFR 184

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PD +IF     F    +    Q  A+ +  ++      ++  E         +Y   GL 
Sbjct: 185 PDEEIFSTI-DFKFDIIDSRLQELAFQNKGIRLELVDTRKGQEASKE-----YYSENGLL 238

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKG-THRGTVEWAIAWCEENPEIT-SYCNTILTDEGG 328
            +++   E+++ +         E+     +   E  I + +   E   SY N I T E G
Sbjct: 239 DFIKYLNESKTPLHEIPIIFDGERTVSNIQMYGEICIQFTDSTTEYIASYVNNIPTTEAG 298

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           THE+G +  +TR  K++A+      ++      DDL      I+ + I  P F GQTKTK
Sbjct: 299 THETGFKTGMTRAFKEWAKKLGLVKEKDKEFEGDDLREGMTAIVRIKITNPVFEGQTKTK 358

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L + +A   + + +   F  ++  N   AT ++   +E ++ R + +K  +  RK   + 
Sbjct: 359 LGNSEAYTMMNDLVYTKFSEWIEDNKELATFVINNALEAAKRRDKIKKINDAERKKIGKG 418

Query: 447 L-RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              L GK+A C+       E  +VEGDSAGGSAKQAR+R  Q ++P +GKI+N      E
Sbjct: 419 TAPLAGKVAVCTMKDKTVNEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKLE 478

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
            +  ++++     A+G  T   Y+EEDL+Y+K+IIM+DADVDG HI +L +T+ Y+ M  
Sbjct: 479 NVLASEELKIFNTAVGTGTLDNYKEEDLKYDKIIIMSDADVDGYHIRTLWMTYIYRYMRP 538

Query: 566 LIEQKHLFLISPPLFRI---TQGTK-SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
           LI   HL+L  PPL+++   T+G     YA+ ++   K+ +E  K       I R+KGLG
Sbjct: 539 LIANGHLYLAQPPLYKVYRETKGKSIVKYAYSDDDLDKVKKEVGKGAL----IQRYKGLG 594

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           EM   QL ET ++   RTLLRV I          +  ++ LMG   + R  ++ +   F
Sbjct: 595 EMNPDQLWETTLNPESRTLLRVNIED----AAKAEKMVSLLMGDVVEPRKNYMYKYGEF 649


>gi|311695418|gb|ADP98291.1| DNA topoisomerase IV, subunit B [marine bacterium HP15]
          Length = 631

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 259/649 (39%), Positives = 369/649 (56%), Gaps = 28/649 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           +   Y+A +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A  I+V
Sbjct: 2   SQQQYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHAKRIDV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +G L+V D+GRG+PV+ H K      +E+ILT LHAGGKF    Y  SGGLHGVG+
Sbjct: 59  VLYSDGSLSVEDDGRGMPVDLH-KEEGLPGVELILTRLHAGGKFSQGNYNFSGGLHGVGV 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS  L VT+ R   +    F+ G   S LE  + V +   GTR+ F+PD   F  
Sbjct: 118 SVVNALSTHLEVTIKRDGQLHRMTFANGDKASELEVIDTVGKRNTGTRLKFKPDITYFDS 177

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F  +RL    ++KA L   +   +  +K         EK+E+++  GL+ YL+T L 
Sbjct: 178 PN-FSVSRLRHNLRAKAVLCPGLTVTFLQEK-------TGEKDEWFYEDGLRDYLRTALA 229

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336
           +  ++  E FTG        +  V+WAI W  E  E  + SY N I T +GGTH +GLR 
Sbjct: 230 DIEVVPLEPFTGSFSGN---KEAVDWAIQWLPEGGEAIMESYVNLIPTAQGGTHVNGLRT 286

Query: 337 ALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            L   ++++ E      R + +  +D+   A  +LS  ++EP+F+GQTK +L S +A   
Sbjct: 287 GLLEAMREFCEFRNLLPRGVKLSPEDIWERAAYVLSFKMQEPQFSGQTKERLSSREAAAF 346

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           +   ++D F  +L Q+   A  L E  I  ++ RLR    ++V RK       LPGKLAD
Sbjct: 347 ISGVVKDAFSLWLNQHTDVAEALAELFISNAQRRLR--ASKKVARKKVTSGPALPGKLAD 404

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS      +ELF+VEGDSAGGSAKQAR+R  QAV+PLRGKILN     S +I  +Q++ D
Sbjct: 405 CSGGDTARSELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVDSGEILASQEVHD 464

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  A+G    S  + + LRY K+ I+ DAD DG HIA+LL   F +    ++   H+F+ 
Sbjct: 465 IAVAIGVDPGSD-QLDGLRYNKICILADADSDGLHIATLLCALFVKHFRPVVAAGHVFVA 523

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMD 634
            PPL+R+  G ++ YA DE  KQ I++       KGKI ++RFKGLGEM   QL+ET M 
Sbjct: 524 MPPLYRVDLGKETFYALDEHEKQGIIDRIAAEKRKGKISVTRFKGLGEMNPLQLRETTMA 583

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            + R L+ + I        DT   ++ L+G K A +R  +++   +  D
Sbjct: 584 PDTRRLVMLTIEDG----DDTDSRMDMLLGKKRASDRRAWLETYGNMAD 628


>gi|293192587|ref|ZP_06609541.1| DNA gyrase, B subunit [Actinomyces odontolyticus F0309]
 gi|292820094|gb|EFF79091.1| DNA gyrase, B subunit [Actinomyces odontolyticus F0309]
          Length = 706

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 232/702 (33%), Positives = 341/702 (48%), Gaps = 63/702 (8%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
             + + +Y+A  + +LEGLE VR RPGMYIG TD + L H   E+IDNA+DE + G+ + 
Sbjct: 6   TPTDASDYNARHLSVLEGLEAVRKRPGMYIGSTDHRGLMHCLWEIIDNAVDEALEGHCDT 65

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+V L  +   +V DNGRGIPV+  P     + +E++ T LHAGGKF   +Y  SGGLHG
Sbjct: 66  IDVRLHPDHSASVADNGRGIPVDIVP-GQGLTGVEVVYTKLHAGGKFGGGSYAASGGLHG 124

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL--------------------EKK 196
           VG SVVNALS  L V V R        F RG P                        +  
Sbjct: 125 VGASVVNALSARLDVQVDRGGKTHEMCFRRGEPGEFDDSKQRTPNSPFKPFVDGSTLKTV 184

Query: 197 EKVRNK-RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
            KV+    GTR+ F  D +IF    GF    LL   +  A+L   +      ++   E  
Sbjct: 185 GKVKKSLTGTRVRFWADFQIFPSTEGFSWENLLARARQTAFLVPGLTINCYDERGEEE-- 242

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR---------------- 299
                E F F GG+  +      +  +  +   TG+     T +                
Sbjct: 243 ---LHESFRFDGGVVDFANWLASDGPVTDTWHITGEGTYNETVQALDSETGHLRATEVER 299

Query: 300 -GTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK----- 352
              V+ A+ W         S+ N I T +GGTH +G   A+ + ++   +    K     
Sbjct: 300 TCEVDIALRWGIGYDTTVQSFVNIIATPKGGTHVTGFEQAVLKTLRAAIDKNARKLKVGA 359

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
           +      DD+      +++V   EP+F GQTK  L +   +  V   + D        + 
Sbjct: 360 KDGRPEKDDVQAGMTAVITVRFPEPQFEGQTKETLGTPQIRTVVNRVVSDWLKAKFASSK 419

Query: 413 IEATKL----LEWVIERSEERLRRRKQREVNR-KTAIRKLRLPGKLADCSQNIAHGTELF 467
            +  +     +E V+   + R+  R  +E++R K A+    LP KLADC       TELF
Sbjct: 420 RDDKQQTSLLMEKVVGEMKARVSARLHKEISRKKNALETSSLPAKLADCRLEDVEETELF 479

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           IVEGDSA G+AK ARN   QA+ P+RGKILNV  A +  +  N +  +++Q +G  +   
Sbjct: 480 IVEGDSALGTAKAARNSHYQALFPIRGKILNVQKASTADMLANAECANIIQVIGAGSGRT 539

Query: 528 YREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI----- 582
           +     RY KVI+MTDADVDGAHI +LLLT F++ M  ++E   ++   PPL RI     
Sbjct: 540 FDLSQARYGKVILMTDADVDGAHIRTLLLTLFFRYMRPMVEAGRIYAAVPPLHRIEVAGK 599

Query: 583 -TQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANKRTL 640
             +  + +Y + E+   + L   ++ G+  K  I R+KGLGEM A QL ET MD   R+L
Sbjct: 600 GRKKREYIYTYSEDELHRKLAALRRSGRTWKEPIQRYKGLGEMDADQLAETTMDRAHRSL 659

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            R+ +  +  +L+  +D    LMG+    R +FI E ++ +D
Sbjct: 660 RRITLADE-EALRQAEDVFELLMGSTVGPRKEFIVEESAGLD 700


>gi|187934374|ref|YP_001884982.1| DNA topoisomerase IV subunit B [Clostridium botulinum B str. Eklund
           17B]
 gi|187722527|gb|ACD23748.1| DNA gyrase subunit B [Clostridium botulinum B str. Eklund 17B]
          Length = 649

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 227/661 (34%), Positives = 350/661 (52%), Gaps = 36/661 (5%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
            ++NYD + +  LE LEPVR+RPGMYIG T  K LHH   E++DNA+DE+  GY + + +
Sbjct: 4   KNNNYDVTDLTSLEKLEPVRIRPGMYIGSTGTKGLHHCIWEILDNAIDEITNGYGDKVTI 63

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L+ +   T+ DNGRGIP   HP    KS +E++ T LH GGKFDN  Y+ SGGLHGVG 
Sbjct: 64  VLNADKSATIYDNGRGIPTGIHP-IKKKSGVEMVFTELHTGGKFDNKNYKTSGGLHGVGA 122

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTRIT 208
           +VVNALS  + V V + + I+ Q+F             G P+S L+   K  +K GT++T
Sbjct: 123 AVVNALSKWVEVEVYQNSNIYRQRFEYAFDKELKRSMPGTPVSKLQVIGKT-DKTGTKVT 181

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F+PD +IF     F    +    Q  A+ +  ++      ++  E         +Y   G
Sbjct: 182 FKPDSEIF-SYIDFKFDVIDSRLQELAFQNKGIRLELIDRRKDEEIQKE-----YYSENG 235

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEENPEIT-SYCNTILTDE 326
           L  ++    E++++I       + E+     +   E  I + + + E   SY N I T E
Sbjct: 236 LLDFINYLNESKTVIHEIPIIFEGERTVNNLQVQGEICIQFTDSSTEYIASYVNNIPTTE 295

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
            GTHE+G +  +TR  K+ A+      ++      +DL      IL + I  P F GQTK
Sbjct: 296 AGTHETGFKTGMTRAFKEGAKRLNLIKEKDKEFEGNDLREGMTAILRIKITNPIFEGQTK 355

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
           TKL + +A   + + +      ++  N   AT L+   +E ++ R + +K  +   +K  
Sbjct: 356 TKLGNNEAYTMMNDLVYTKLLEWIEDNKELATTLISNALESAKRREKIKKINDAEKKKVG 415

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    L GK+A C+       E  +VEGDSAGGSAKQAR+R  Q ++P +GKI+N     
Sbjct: 416 VGTAPLAGKIAVCTLKDKSVNEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQK 475

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            E +  ++++     A+G  T   Y+++D++Y+KVIIM+DADVDG HI +L +T+ Y+ M
Sbjct: 476 LENVLASEELRIFNAAIGTGTLENYKQDDMKYDKVIIMSDADVDGYHIRTLWMTYIYRYM 535

Query: 564 YDLIEQKHLFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
             LI   HL+L  PPL+++ +  K      YA+ +E  +K  +E  K       I R+KG
Sbjct: 536 RSLIANGHLYLAQPPLYKVYKVNKGSETVKYAYSDEELEKAKKEIGKGAL----IQRYKG 591

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679
           LGEM   QL ET ++   RTL++V I+         +  I+ LMG   + R  ++ +   
Sbjct: 592 LGEMNPEQLWETTLNPETRTLIQVTIDD----AAKAEKMISLLMGDVVEPRKNYMYKYGE 647

Query: 680 F 680
           F
Sbjct: 648 F 648


>gi|146305639|ref|YP_001186104.1| DNA topoisomerase IV subunit B [Pseudomonas mendocina ymp]
 gi|145573840|gb|ABP83372.1| DNA topoisomerase IV subunit B [Pseudomonas mendocina ymp]
          Length = 632

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 238/651 (36%), Positives = 358/651 (54%), Gaps = 26/651 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  + Y+A +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A  I+
Sbjct: 2   AQQNAYNADAIEVLSGLDPVRKRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHAKSIQ 58

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V L  +  L V+D+GRG+PV+ HP+      +E+ILT LHAGGKF N  Y+ SGGLHGVG
Sbjct: 59  VILHEDNSLEVIDDGRGMPVDIHPE-EGVPGVELILTKLHAGGKFSNKNYQFSGGLHGVG 117

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFG 217
           ISVVNALS  + VTV R    +   F+ G   S LE    V +   GT + F PD K F 
Sbjct: 118 ISVVNALSTRVVVTVKRDGNEYQMSFADGFKASELEVIGTVGKRNTGTSVHFWPDAKYFD 177

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F  +RL  + ++KA L   +   +             EK E+++  GL++YL   +
Sbjct: 178 SF-KFSVSRLKHVLKAKAVLCPGLSVTFEDK-------AAGEKVEWHYEDGLRSYLVDAV 229

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLR 335
                + +E F G        +  V+WA+ W  E  +    SY N I T +GGTH +GLR
Sbjct: 230 SEFERLPAEPFVGSLAGN---KEAVDWALLWLPEGGDAVQESYVNLIPTAQGGTHVNGLR 286

Query: 336 VALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
             L   ++++ E      R + +  +D+      +LS+ +++ +F+GQTK +L S +A  
Sbjct: 287 QGLLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQDAQFSGQTKERLSSREAAA 346

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454
            V   ++D F  +L  +P     L E  I  +  RL+    ++V RK   +   LPGKLA
Sbjct: 347 FVSGVVKDAFSLWLNAHPETGLALAELAISNAGRRLK--AGKKVERKKITQGPALPGKLA 404

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC+       ELF+VEGDSAGGSAKQAR++  QA++PLRGKILN       ++  +Q++ 
Sbjct: 405 DCAGQNPLRCELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNTWEVDGSEVLASQEVH 464

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           D+  A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++
Sbjct: 465 DIAVAIGIDPGSSDL-SGLRYGKICILADADSDGLHIATLLCALFVRHFRPLVDAGHVYV 523

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAM 633
             PPL+RI  G +  YA D+  +  IL+       +GK +++RFKGLGEM   QL+ET M
Sbjct: 524 AMPPLYRIDLGKEIFYALDDAERDGILDRLVAEKRRGKPQVTRFKGLGEMNPPQLRETTM 583

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           D N R L+++ ++    + +        L   +A +R  +++ + +  + +
Sbjct: 584 DPNTRRLVQLTLDDFEGTREVMDML---LAKKRAGDRKSWLETKGNLAEVL 631


>gi|117618295|ref|YP_858204.1| DNA topoisomerase IV subunit B [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559702|gb|ABK36650.1| DNA topoisomerase IV, B subunit [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 631

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 245/646 (37%), Positives = 359/646 (55%), Gaps = 23/646 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  +EV+
Sbjct: 2   STQYNADAIEVLNGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARTLEVT 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LYEDQSLEVIDDGRGMPVDIHPE-EGVCGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS+ + VTV R   ++   F +G  +  L       R   GTR+ F P+   F   
Sbjct: 118 VVNALSERVEVTVRRDGQVYDIAFEKGEKVQELTITGTCGRRNTGTRVRFWPEAHYFDSP 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  ++L  + ++KA L   +   +              K E+ +  GLK YL   ++ 
Sbjct: 178 R-FSVSKLEHLLKAKAVLCPGLTIKFLDK-------NTGIKLEWCYEDGLKDYLVDAVKQ 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVA 337
            + +  + F G    +   +  V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 FTCLPEQPFVGAFSTE---QSAVDWALCWLPEGGECLAESYVNLIPTAQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + +  +D+      ILS+ +++P+FAGQTK +L S  +   V
Sbjct: 287 LLDAMREFCEFRNLLPRGVKLTPEDIWDRCAYILSIKMQDPQFAGQTKERLSSRQSSAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  YL  N   A +L E  I  ++ R+R    + V RK   +   LPGKL DC
Sbjct: 347 SGVVKDAFSLYLNSNTELAEQLAELCISSAQRRMR--AAKTVVRKKITQGPALPGKLTDC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
                   ELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     + ++  +Q++ D+
Sbjct: 405 GCADPMQGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVEAGQVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY KV I+ DAD DG HIA+LL   F +    L+ Q H+++  
Sbjct: 465 SVAIGLDPDSDDL-SGLRYGKVCILADADSDGLHIATLLCALFVKHFRALVNQGHVYVAM 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFK-KHGKGKIEISRFKGLGEMLASQLKETAMDA 635
           PPL+RI  G +  YA DE+ K  +L+  + +  KGK+ ++RFKGLGEM   QL+ET MD 
Sbjct: 524 PPLYRIDIGKEVYYALDEDEKNGVLQRVEAEKKKGKVMVTRFKGLGEMNPKQLRETTMDP 583

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           N R L+++ +  +    +  Q     L   +A +R ++++E+ +  
Sbjct: 584 NTRRLVQLTMGPEAEGDETLQLMDMLLAKKRASDRREWLEEKGNLA 629


>gi|88856909|ref|ZP_01131561.1| DNA gyrase subunit B [marine actinobacterium PHSC20C1]
 gi|88813877|gb|EAR23747.1| DNA gyrase subunit B [marine actinobacterium PHSC20C1]
          Length = 692

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 227/690 (32%), Positives = 334/690 (48%), Gaps = 63/690 (9%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           AS +Y A  + +LEGLE VR RPGMYIG TD + L H   EVIDN++DE + G+ + I V
Sbjct: 2   ASSDYSARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEVIDNSVDEALDGHGSEISV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +  + V D  RGIPV+  PK    S +E++ T LHAGGKF + +Y  SGGLHGVG 
Sbjct: 62  ILHADESVEVRDQARGIPVDIEPK-TGLSGVEVVFTKLHAGGKFGSGSYAASGGLHGVGA 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN------------------ 201
           SVVNALS+ L V V R    ++  F RG P +  +      +                  
Sbjct: 121 SVVNALSERLDVEVDRDGKTWAMSFHRGEPGTFADTGAPTPDAPFTPFVSGSELRIVGKV 180

Query: 202 ---KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
              + GTR+ +  D +IF   A F +  L+   +  A+L   +    + ++        P
Sbjct: 181 PKARTGTRVRYWADRQIFTKGATFQSDGLIDRLRQTAFLVPNLTLNVTDER-----GDEP 235

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT----------------EKKGTHRGTV 302
             E F F GG+  +++    +  +      TG                    + +    V
Sbjct: 236 RHESFAFEGGISEFVEHLATDPPITDIWRLTGSGGFTESVPVLQENGHMVSTEVSRDCVV 295

Query: 303 EWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIK---KYAELTQNKRAISII 358
           + A+ W       I S+ N I T +GGTH +G   +L + ++   +         +  + 
Sbjct: 296 DVALRWGTGYDTVIKSFVNIIATPKGGTHMAGFEQSLLKFLRTETEKNSRRLKLGSDKLD 355

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD++     +L+V + EP+F GQTK  L +   +  V   + +           +    
Sbjct: 356 KDDVLAGLTVVLTVRLPEPQFEGQTKEILGTPAVRSIVAKVIANSMAEKFASTKRDDKAQ 415

Query: 419 ----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
               L+ V+   + R+  R  +E   RK A+    LP KL DC  +    +ELFIVEGDS
Sbjct: 416 ASLVLDKVVAEMKSRISARAHKETQRRKNALESSSLPAKLVDCRSSDVANSELFIVEGDS 475

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           A G+AK  R+   QA+LP+RGKILNV  A    + +N +   ++Q +G  +   +     
Sbjct: 476 ALGTAKLGRDSEYQALLPIRGKILNVQKASISDMLSNAECASIIQVIGAGSGRSFDLASA 535

Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI------TQGTK 587
           RY KVIIM DADVDGAHI +LLLT F++ M D+I    ++   PPL RI      ++  +
Sbjct: 536 RYGKVIIMADADVDGAHIRTLLLTLFFRYMPDMIRDGRVYAAVPPLHRIVVMNPGSKPNE 595

Query: 588 SVYAHDEEHKQKILEEFKKHGKGKIE-ISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646
           ++Y + E+    +L   KK GK   + I R+KGLGEM A QL  T MD N R L RV I+
Sbjct: 596 TIYTYSEKELNTVLASLKKSGKRYQDPIQRYKGLGEMDADQLATTTMDRNNRVLRRVNIS 655

Query: 647 KDLNSLKDTQDSINKLMGTKADERFKFIQE 676
               +          LMG +   R +FI +
Sbjct: 656 DAEGAGA----VFELLMGNEVAPRKEFIIQ 681


>gi|29828984|ref|NP_823618.1| DNA topoisomerase IV subunit B [Streptomyces avermitilis MA-4680]
 gi|29606089|dbj|BAC70153.1| putative a subunit of topoisomerase IV [Streptomyces avermitilis
           MA-4680]
          Length = 707

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 238/687 (34%), Positives = 342/687 (49%), Gaps = 52/687 (7%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY A  + +LEGLE VR RPGMYIG TD + L H   E+IDN++DE + GY + I+V L
Sbjct: 21  SNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALGGYCDHIDVIL 80

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G + V DNGRGIPV+  PK    S +E+++T LHAGGKF   +Y  SGGLHGVG SV
Sbjct: 81  HDDGSVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGASV 139

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN---------------KRGTR 206
           VNALS  L V V R     +  F RG+P +        +                + GTR
Sbjct: 140 VNALSARLDVEVDRSGHTHAISFRRGVPGAFATVGPDAKFDATAGLRKAKKIPRTRTGTR 199

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + +  D +IF   A      L +  +  A+L   +      +  + E     E E F F 
Sbjct: 200 VRYWADRQIFLKDAKLSLENLHQRARQTAFLVPGLTIVVRDEYGLGEGGSKGE-ESFRFD 258

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTVEWAIAWCE 310
           GG+  + +    ++ +     F+G+                   + T    V+ A+ W  
Sbjct: 259 GGISEFCEYLATDKPVCDVLRFSGQGTFKETVPVLDDHGQMTPTEVTRELGVDVAMRWGT 318

Query: 311 ENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAV 367
                  S+ N I T +GGTH +G   A+T+ + +     +  R        DD +    
Sbjct: 319 GYDTTLKSFVNIIATPKGGTHVAGFEQAVTKTVNEVLRAKKLLRVAEDDVVKDDALEGLT 378

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER-- 425
            +++V + EP+F GQTK  L +  A+R V N +      +L     +A      V+E+  
Sbjct: 379 VVVTVRLAEPQFEGQTKEVLGTSAARRIVTNVVSKELKAFLTSTKRDAAAQARVVLEKAV 438

Query: 426 ---SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
                    R+ +    RKTA+    LP KLADC  +    +ELFIVEGDSA G+AK AR
Sbjct: 439 AAARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDDVERSELFIVEGDSALGTAKLAR 498

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           N   QA+LP+RGKILNV  A    +  N +   ++Q +G  +   +  +  RY K+I++ 
Sbjct: 499 NSEFQALLPIRGKILNVQKASVTDMLKNAECGAIIQVIGAGSGRTFDIDAARYGKIILLV 558

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-----TQGT-KSVYAHDEEH 596
           DADVDGAHI  LLLT F + M  ++E   +F   PPL RI      +G  K VY + +  
Sbjct: 559 DADVDGAHIRILLLTLFQRYMRPMVEAGRVFAAVPPLHRIELSQPKKGQDKYVYTYSDRE 618

Query: 597 KQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
            ++ L E  +K+ + K  I R+KGLGEM A QL ET MD   RTL R+ I+     L+ +
Sbjct: 619 LRETLLELQRKNVRYKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRINISD----LEAS 674

Query: 656 QDSINKLMGTKADERFKFIQERASFID 682
           +   + LMG     R +FI   A+ +D
Sbjct: 675 EQVFDLLMGNDVAPRKEFISSSAATLD 701


>gi|329667368|gb|AEB93316.1| topoisomerase IV subunit B [Lactobacillus johnsonii DPC 6026]
          Length = 622

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 227/629 (36%), Positives = 339/629 (53%), Gaps = 33/629 (5%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIG TD   L+HL  E++DN++DE +AGY   I V++  +  +TV D GRG+P   H  
Sbjct: 1   MYIGSTDRHGLNHLIYEIVDNSVDEAMAGYGKEINVTIHKDNSVTVQDFGRGMPTGMHE- 59

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
                T+E+ILT LHAGGKF    Y+ SGGLHGVG SVVNALS  L V V R    + ++
Sbjct: 60  -SGIPTIEVILTVLHAGGKFTEKNYQTSGGLHGVGSSVVNALSSYLKVRVVRDGQAYEEE 118

Query: 184 FSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
           F  G  P+  L+   K ++K GT ITF+PDP IF     ++   + +  +  A+L   VK
Sbjct: 119 FENGGHPIGTLKHLGKTKDKNGTTITFKPDPTIFSTT-TYNYETIQERIRESAFLLKGVK 177

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
              + ++E          +EF +  G+K+++    E++  +  ++F    ++ G     V
Sbjct: 178 FTLTDEREPE------HHDEFLYEDGIKSFVSYLNEDKDTMG-DVFYFSGKQNGI---EV 227

Query: 303 EWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--IS 359
           E++  + +   E   S+ N + T +GG+HE+G R   T+    YA+     +        
Sbjct: 228 EFSGQYNDGYSENFVSFVNNVRTADGGSHEAGARSGFTKAFNDYAKKQGLLKNKDKGLEG 287

Query: 360 DDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
            D       +LSV I E   EF GQTK KL +  A+  V++ + +   +YL++N   A  
Sbjct: 288 SDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSVVDSIVYEQLSYYLMENGEFAQS 347

Query: 418 LLEWVIERSEERLRRRKQREVNRKTAI--RKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
           L++   +  + R   +K R+ +R      +K  L GKL           ELF+VEGDSAG
Sbjct: 348 LVQKAQKARDAREAAKKARDESRSGKKRRKKEILSGKLTPAQSRNPKKNELFLVEGDSAG 407

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           GSAKQ R+R  QA+LPLRGK+LN   A  + I  N++I  ++  +G    S ++ +D  Y
Sbjct: 408 GSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIHTIGAGVGSDFQIKDANY 467

Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT----KSVYA 591
           +K+IIMTDAD DGAHI  LLLTFFY+ M  ++E   +++  PPL+++ +G     K  YA
Sbjct: 468 DKIIIMTDADTDGAHIQILLLTFFYRYMRPMVEAGRVYIALPPLYKLQKGNGAKAKIKYA 527

Query: 592 HDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651
             +E   +  ++  K       + RFKGLGEM A QL ET M+   RTL+RV+I+     
Sbjct: 528 WTDEELSEDSKDMGK----GFALQRFKGLGEMNADQLWETTMNPETRTLIRVKIDD---- 579

Query: 652 LKDTQDSINKLMGTKADERFKFIQERASF 680
            +  +  +  LMG K   R K+I E   F
Sbjct: 580 AQLAEKRVTTLMGDKVAPRRKWIDENVKF 608


>gi|304312518|ref|YP_003812116.1| Gram negative topoisomerase IV, subunit B [gamma proteobacterium
           HdN1]
 gi|301798251|emb|CBL46473.1| Gram negative topoisomerase IV, subunit B [gamma proteobacterium
           HdN1]
          Length = 629

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 251/647 (38%), Positives = 365/647 (56%), Gaps = 26/647 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           +++ Y+A SI +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+AN + V
Sbjct: 2   SANTYNAESIEVLSGLDPVRRRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHANTVSV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +G + + DNGRG+PV+ HP+   +  +E+IL TLHAGGKF N  Y  SGGLHGVG+
Sbjct: 59  ILHPDGSMEISDNGRGMPVDIHPEQ-GRPGVEVILCTLHAGGKFSNKNYTFSGGLHGVGV 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS  L VTV R   +    F  G   S LE      +   GT I F PDP  F  
Sbjct: 118 SVVNALSSVLEVTVKRDGKVHRMGFKGGEKASELEVVGNCAKRDTGTTIRFLPDPSYFDT 177

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F  ++LL + ++KA L  R++  +          G  E++E+Y+  GL+ YL +   
Sbjct: 178 P-KFLVSKLLHLLRAKAVLCPRLRVTFKD-------AGTGEEQEWYYENGLRDYLMSSHV 229

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336
           +  L+ ++ F G    +       +WA++W  E  +    SY N I T +GGTH +G R 
Sbjct: 230 DTPLLPADPFVGSVSGE---SEVADWAVSWLPEGGDLVAESYVNLIPTLQGGTHVNGFRS 286

Query: 337 ALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            LT  +++Y E      R + +  +DL   A  +LSV +++P+FAGQ K +L S      
Sbjct: 287 GLTDAMREYCEFRNLMPRGVKLSPEDLWDQASYVLSVKMQDPQFAGQIKERLSSRQIAAF 346

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           V   ++D F  +L QN  E   L E  I  +  R+R    ++V RK       LPGKLAD
Sbjct: 347 VSGVVKDAFSLWLSQNTQEGDALAELAINNANRRMR--AAKKVARKKVTAGPALPGKLAD 404

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C+   +   ELF+VEGDSAGGSAKQAR+R  QAV+PLRGKILN     S +I  +Q++ D
Sbjct: 405 CTSQDSENGELFLVEGDSAGGSAKQARDREYQAVMPLRGKILNTWEVDSSEILASQEVHD 464

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  A+G    S    E+LRY K+ I+ DAD DGAHIA+LL   F +    +++  H+++ 
Sbjct: 465 IAVAIGVDPASSDL-ENLRYNKICILADADSDGAHIATLLCALFLRHFRPVVDAGHIYIA 523

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK-IEISRFKGLGEMLASQLKETAMD 634
            PPL+RI  G +  YA DE  KQ +L+  K   K   I+++RFKGLGEM   QL+ET M 
Sbjct: 524 MPPLYRIDIGKEVFYALDEGEKQGVLDRIKAEKKRGQIQVTRFKGLGEMNPIQLRETTMA 583

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
            + R L+++ +    ++          L   ++ +R  +++++ +  
Sbjct: 584 RDTRRLVQLTVEDAESTCDLVDLL---LAKKRSSDRRAWLEDKGNLA 627


>gi|4176381|dbj|BAA37153.1| topoisomerase IV subunit [Pseudomonas aeruginosa]
          Length = 629

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 242/647 (37%), Positives = 354/647 (54%), Gaps = 26/647 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+A +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V L 
Sbjct: 3   TYNADAIEVLSGLDPVRKRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHAKSVQVILH 59

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  L V+D+GRG+PV+ HP+      +E+ L  LHAGGKF N  Y+ SGGLHGVGISVV
Sbjct: 60  QDNSLEVIDDGRGMPVDIHPE-EGVPGVELTLIKLHAGGKFSNKNYQFSGGLHGVGISVV 118

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221
           NALS  + V V R    +   F+ G   S LE    V +   GT + F PDPK F     
Sbjct: 119 NALSTRVEVRVKRDANEYRMTFADGFKDSDLEVIGTVGKRNTGTSVHFWPDPKYFDSA-K 177

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F  +RL  + ++KA L   +   +             E+ E++F  GL++YL   +    
Sbjct: 178 FSVSRLKHVLKAKAVLCPGLSVVFEDK-------NTGERVEWHFEDGLRSYLTDAVAELP 230

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALT 339
            +  E F G  E     +  V WA+ W  E  E    SY N I T +GGTH +GLR  L 
Sbjct: 231 RLPDEPFCGNLEG---SKEAVSWALLWLPEGGESVQESYVNLIPTAQGGTHVNGLRQGLL 287

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R + +  +D+      +LS+ ++EP+F+GQTK +L S +A   V  
Sbjct: 288 DAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSG 347

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L ++     +L E  I  +  RL+    ++V RK   +   LPGKLADC+ 
Sbjct: 348 VVKDAFSLWLNEHAEIGLQLAELAISNAGRRLK--AGKKVERKKITQGPALPGKLADCAG 405

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 ELF+VEGDSAGGSAKQAR++  QA++PLRGKILN       ++  +Q++ D+  
Sbjct: 406 QEPMRAELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNTWEVDGGEVLASQEVHDIAV 465

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+G    +      LRY K+ I+ DAD DG HIA+LL   F +    L+E  H+++  PP
Sbjct: 466 AIGVDPGASDL-AQLRYGKICILADADSDGLHIATLLCALFVRHFRPLVEAGHVYVAMPP 524

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANK 637
           L+RI  G    YA DE  +  ILE      K GK +++RFKGLGEM   QL+ET MD N 
Sbjct: 525 LYRIDLGKDIYYALDEAERDGILERLAAEKKRGKPQVTRFKGLGEMNPLQLRETTMDPNT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           R L+++ +     +L+        L   +A +R  +++ + +  + +
Sbjct: 585 RRLVQLTLEDATGTLEIMDML---LAKKRAGDRKSWLESKGNLAEVL 628


>gi|119776175|ref|YP_928915.1| DNA topoisomerase IV subunit B [Shewanella amazonensis SB2B]
 gi|119768675|gb|ABM01246.1| DNA topoisomerase IV subunit B [Shewanella amazonensis SB2B]
          Length = 628

 Score =  535 bits (1378), Expect = e-150,   Method: Composition-based stats.
 Identities = 249/646 (38%), Positives = 361/646 (55%), Gaps = 26/646 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y++ +I +L GLEPV+ RPGMY   TD    +HL  EVIDN++DE +AG+A+ I+V 
Sbjct: 2   TNLYNSDAIEVLNGLEPVKRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHASRIDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+ILT LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LQTDNSLEVIDDGRGMPVDIHPE-EGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + +TV R   ++   F  G  +  L       R   GTR+ F P+P  F   
Sbjct: 118 VVNALSRRVEITVRRDAQVYDMAFEHGDKVESLTVTGTCGRRNTGTRVHFWPEPSYFDSP 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F   +L+ + ++KA L   ++  ++            E  E+YF  GL  YL++ + +
Sbjct: 178 N-FSITKLIHLLKAKAVLCPGLRIKFTNK-------QTGEVHEWYFEAGLTDYLKSAVGD 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVA 337
             ++  E F G            +WAI W  E  E    SY N I T  GGTH +G R  
Sbjct: 230 APMLPQEPFVGSFAGNNE---AADWAITWLPEGGEYLAESYVNLIPTPLGGTHVNGFRQG 286

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R I +  +D+      ILS+ +++P+FAGQTK KL S  +   V
Sbjct: 287 LLESMREFCEFRNLIPRGIKLSPEDIWDKTAFILSIKMQDPQFAGQTKEKLSSRQSAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              +RD F  YL  +   A  L E  I  +++R++  K+    + TA     LPGKL DC
Sbjct: 347 SGIVRDAFSLYLNSHTDLAEMLAEMCISNAQKRMKAAKKVARKKVTA--GPALPGKLTDC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +ELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     + ++  +Q++ D+
Sbjct: 405 SGQDPMTSELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVEASQVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+GC   S     +LRY KV I+ DAD DG HIA+LL   F +    L+E+ H+++  
Sbjct: 465 SVAIGCDPDSDDI-SELRYGKVCILADADSDGLHIATLLCALFLKHYRVLVERGHVYIAM 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDA 635
           PPLFRI  G +  YA DE  KQ IL+     G KGK +++RFKGLGEM   QL+ET MD 
Sbjct: 524 PPLFRIDIGKEVYYALDESEKQGILDRIAAEGKKGKPQVTRFKGLGEMNPLQLRETTMDP 583

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           N R L+++ I+   +++         L   ++ +R  +++ +    
Sbjct: 584 NTRRLVQLTIDDSDDTVALMDML---LAKKRSGDRKTWLETKGDLA 626


>gi|229588054|ref|YP_002870173.1| DNA topoisomerase IV subunit B [Pseudomonas fluorescens SBW25]
 gi|229359920|emb|CAY46774.1| topoisomerase IV subunit B [Pseudomonas fluorescens SBW25]
          Length = 634

 Score =  535 bits (1378), Expect = e-150,   Method: Composition-based stats.
 Identities = 243/655 (37%), Positives = 371/655 (56%), Gaps = 28/655 (4%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
              ++ +Y+A +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A  
Sbjct: 2   ATPSASSYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHAKS 58

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           + V L  +  L V D+GRG+PV+ HP+    S +E+ILT LHAGGKF N  Y+ SGGLHG
Sbjct: 59  VHVILHADHSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGLHG 117

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKI 215
           VGISVVNALS+ + V V R    +   F+ G   + L+    V +   GT + F PDPK 
Sbjct: 118 VGISVVNALSNHVRVKVKRDGNEYEMTFADGYKATDLQVIGTVGKRNTGTSVYFAPDPKY 177

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     F  +RL  + ++KA L   +   +          G  EK E+++  GL++YL+ 
Sbjct: 178 FDSP-KFSISRLKHVLKAKAVLCPGLLVTFEDK-------GTNEKVEWHYEDGLRSYLED 229

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESG 333
            + +   + +E F G        +  V+WA+ W  E  +    SY N I T +GGTH +G
Sbjct: 230 SVRDFERLPNEPFCGSLAGN---KEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHVNG 286

Query: 334 LRVALTRGIKKYAEL-TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           LR  L   ++++ E  +   R + +  +D+      +LS+ ++EP+F+GQTK +L S +A
Sbjct: 287 LRQGLLDAMREFCEYRSLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREA 346

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
              V   ++D F  +L ++P     L E  I  +  RL+    ++V RK   +   LPGK
Sbjct: 347 AAFVSGVVKDAFSLWLNEHPELGLALAELAINNAGRRLK--ASKKVERKRITQGPALPGK 404

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC+      +ELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN       ++  +Q+
Sbjct: 405 LADCAGQDPMRSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGSEVLASQE 464

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           + ++  A+G    +      LRY K+ I+ DAD DG HIA+LL   F Q    L++  H+
Sbjct: 465 VHNIAVAIGVDPGAADM-SQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHV 523

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKET 631
           ++  PPL+RI  G +  YA DE  +  IL+    +  +GK +++RFKGLGEM   QL+ET
Sbjct: 524 YVAMPPLYRIDLGKEIFYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRET 583

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDVG 685
            MD N R L+++ ++        T + ++ L+  K A +R  +++ + +  + +G
Sbjct: 584 TMDPNTRRLVQLTLDD----FAATSEMMDMLLAKKRAPDRKSWLESKGNLAEVLG 634


>gi|114564488|ref|YP_752002.1| DNA topoisomerase IV subunit B [Shewanella frigidimarina NCIMB 400]
 gi|114335781|gb|ABI73163.1| DNA topoisomerase IV subunit B [Shewanella frigidimarina NCIMB 400]
          Length = 628

 Score =  535 bits (1378), Expect = e-150,   Method: Composition-based stats.
 Identities = 249/646 (38%), Positives = 355/646 (54%), Gaps = 26/646 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S+ Y + +I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AG+A  IEV 
Sbjct: 2   SNQYTSDAIEVLNGLDPVKRRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHATKIEVV 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V D+GRG+PV+ H +      +E+ILT LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHTDNSLEVTDDGRGMPVDIHAE-EGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + ++V R   I+   F  G  +  L       R   GTR+ F PD   F   
Sbjct: 118 VVNALSTRVEISVRRDAQIYQMAFENGFKVEELVVTGTCGRRNTGTRVHFWPDVSYFDSP 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  ++L+ + ++KA L   ++  ++            +  E+++  GL  YL+  +++
Sbjct: 178 N-FSVSKLIYILRAKAVLCPGLRIKFTNK-------QNGDVHEWFYESGLTDYLKEAIKD 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVA 337
             L+  E F G  + K       EWAI W  E  E    SY N I T  GGTH +G R  
Sbjct: 230 SVLLPEEPFVGSFKGK---LEAAEWAITWLPEGGESLSESYVNLIPTPLGGTHVNGFRQG 286

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R I +  +D+   A  ILS+ +++P+FAGQTK KL S  +   V
Sbjct: 287 LLESMREFCEFRNLVPRGIKLSPEDIWDRAAFILSIKMQDPQFAGQTKEKLSSRQSSAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
               RD F  +L  N   A +L E  I  +  RL+  K  +V RK       LPGKL DC
Sbjct: 347 SGIARDAFSLWLNSNTELAEQLAELCIGNALRRLKAAK--KVARKKVTSGPALPGKLTDC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S       ELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     S ++  +Q++ ++
Sbjct: 405 SGQDPMRGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDSGQVLASQEVHNI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+GC   S     +LRY K+ I+ DAD DG HIA+LL   F +    L+   H+++  
Sbjct: 465 SIAIGCDPDSDDI-SELRYGKICILADADSDGLHIATLLCALFLKHYRVLVNNGHVYIAM 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
           PPLFRI  G +  YA DE  K  IL+    ++ KGK++++RFKGLGEM   QL+ET MD 
Sbjct: 524 PPLFRIDIGKEVFYALDEAEKVGILDRITAENKKGKVQVTRFKGLGEMNPLQLRETTMDP 583

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           N R L+++ I+    ++         L   +A +R  +++ +    
Sbjct: 584 NTRRLVQLTIDDADETVALMDML---LAKKRAPDRKSWLETKGDLA 626


>gi|330501591|ref|YP_004378460.1| DNA topoisomerase IV subunit B [Pseudomonas mendocina NK-01]
 gi|328915877|gb|AEB56708.1| DNA topoisomerase IV subunit B [Pseudomonas mendocina NK-01]
          Length = 632

 Score =  535 bits (1378), Expect = e-150,   Method: Composition-based stats.
 Identities = 239/651 (36%), Positives = 358/651 (54%), Gaps = 26/651 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  + Y+A +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A  I+
Sbjct: 2   AQQNAYNADAIEVLSGLDPVRKRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHAKSIQ 58

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V L  +  L V+D+GRG+PV+ HP+      +E+ILT LHAGGKF N  Y+ SGGLHGVG
Sbjct: 59  VILHEDNSLEVLDDGRGMPVDIHPE-EGVPGVELILTKLHAGGKFSNKNYQFSGGLHGVG 117

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFG 217
           ISVVNALS  + VTV R    +   F+ G   S LE    V +   GT + F PD K F 
Sbjct: 118 ISVVNALSTRVVVTVKRDGNEYQMSFADGFKASDLEVIGTVGKRNTGTSVHFWPDAKYFD 177

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F  +RL  + ++KA L   +   +             EK E+ +  GL++YL   +
Sbjct: 178 SF-KFSVSRLKHVLKAKAVLCPGLSVTFEDK-------AAGEKVEWLYEDGLRSYLVDAV 229

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLR 335
                + +E F G        +  V+WA+ W  E  +    SY N I T +GGTH +GLR
Sbjct: 230 SEFERLPAEPFCGALAGN---KEAVDWALLWLPEGGDAVQESYVNLIPTAQGGTHVNGLR 286

Query: 336 VALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
             L   ++++ E      R + +  +D+      +LS+ +++ +F+GQTK +L S +A  
Sbjct: 287 QGLLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQDAQFSGQTKERLSSREAAA 346

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454
            V   ++D F  +L  NP    +L E  I  +  RL+    ++V RK   +   LPGKLA
Sbjct: 347 FVSGVVKDAFSLWLNANPETGLQLAELAISNAGRRLK--AGKKVERKKITQGPALPGKLA 404

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC+       ELF+VEGDSAGGSAKQAR++  QA++PLRGKILN       ++  +Q++ 
Sbjct: 405 DCAGQNPLRCELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNTWEVDGSEVLASQEVH 464

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           D+  A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++
Sbjct: 465 DIAVAIGIDPGSNDL-SGLRYGKICILADADSDGLHIATLLCALFVRHFRPLVDAGHVYV 523

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAM 633
             PPL+RI  G +  YA D+  +  IL+       +GK +++RFKGLGEM   QL+ET M
Sbjct: 524 AMPPLYRIDLGKEIFYALDDAERDGILDRLVAEKRRGKPQVTRFKGLGEMNPPQLRETTM 583

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           D N R L+++ ++    + +        L   +A +R  +++ + +  + +
Sbjct: 584 DPNTRRLVQLTLDDFDGTREVMDML---LAKKRASDRKNWLETKGNLAEVL 631


>gi|297156705|gb|ADI06417.1| DNA topoisomerase IV subunit B [Streptomyces bingchenggensis BCW-1]
          Length = 710

 Score =  535 bits (1378), Expect = e-150,   Method: Composition-based stats.
 Identities = 242/689 (35%), Positives = 344/689 (49%), Gaps = 53/689 (7%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY A  + +LEGLE VR RPGMYIG TD + L H   E+IDN++DE + GY + IEV L
Sbjct: 21  SNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALGGYCDRIEVIL 80

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G + V DNGRGIPV+  PK    S +E+++T LHAGGKF   +Y  SGGLHGVG SV
Sbjct: 81  HDDGSVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGASV 139

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV---------------RNKRGTR 206
           VNALS  L V V R     S  F RG+P    E   +                + + GTR
Sbjct: 140 VNALSSRLDVEVDRDAKTHSISFRRGVPGIFTESGPEAPFDPSSGLLKGKRVPKTRTGTR 199

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--EIAEKYGIPEKEEFY 264
           I +  D +IF   A      L    +  A+L   +      ++  E  +    P +E F 
Sbjct: 200 IRYWADRQIFLKDAKLSLETLYARARQTAFLVPGLTLIVRDERTAEGRDGAEGPSEEIFR 259

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTVEWAIAW 308
           F GG+  + +   +++++      +G+                   + T    V+ A+ W
Sbjct: 260 FDGGISEFCEYLAQDKAVCDVLRLSGQGTFKETVPVLDERGHMTPTEVTRELGVDIALRW 319

Query: 309 CEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMIS 365
                  T S+ N I T +GGTH SG   ++T+ + +     +  R        DD M  
Sbjct: 320 GTGYDSTTKSFVNIIATLKGGTHVSGFERSVTKTVNEVLRTAKLLRVAEDDVVKDDAMEG 379

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              +++V + EP+F GQTK  L +  A R V N +      +L     +  +    V+E+
Sbjct: 380 LTAVVTVRLAEPQFEGQTKEVLGTSAASRIVANVVAKELKAFLTSTKRDDKQQARAVLEK 439

Query: 426 -----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
                      R+ +    RKTA+    LP KLADC  +    +ELFIVEGDSA G+AK 
Sbjct: 440 IVAAARTRIAARQHKEAQRRKTALESSSLPAKLADCRSDDVDRSELFIVEGDSALGTAKL 499

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           ARN   QA+LP+RGKILNV  A    +  N +   ++Q +G  +   +  +  RY KVI 
Sbjct: 500 ARNSEFQALLPIRGKILNVQKASVSDMLKNAECGSIIQVIGAGSGRTFDIDQARYGKVIF 559

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-----TQGT-KSVYAHDE 594
           + DADVDGAHI  LLLT F + M  ++EQ  +F   PPL R+      +G  K VY + +
Sbjct: 560 LADADVDGAHIRILLLTLFQRYMRPMVEQGRVFSAVPPLHRVELVNPKRGQDKYVYTYSD 619

Query: 595 EHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
              Q+ L + ++   + K  I R+KGLGEM A QL ET MD   RTL R+ I+     L+
Sbjct: 620 HELQETLLDLQRRNVRYKDGIQRYKGLGEMDADQLAETTMDPRHRTLRRINISD----LE 675

Query: 654 DTQDSINKLMGTKADERFKFIQERASFID 682
             +   + LMG +   R +FI   A+ +D
Sbjct: 676 AAEQVFDLLMGNEVAPRKEFITNSAATLD 704


>gi|262195363|ref|YP_003266572.1| DNA topoisomerase (ATP-hydrolyzing) [Haliangium ochraceum DSM
           14365]
 gi|262078710|gb|ACY14679.1| DNA topoisomerase (ATP-hydrolyzing) [Haliangium ochraceum DSM
           14365]
          Length = 647

 Score =  535 bits (1378), Expect = e-150,   Method: Composition-based stats.
 Identities = 263/657 (40%), Positives = 371/657 (56%), Gaps = 23/657 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A  +Y A  I +LEGLEPVR RP MYIGGTD+   HHL  E++DN++DEVI  +A  ++V
Sbjct: 2   AQSSYTAQDITVLEGLEPVRKRPAMYIGGTDKVGFHHLLWEIVDNSIDEVINKHATRVDV 61

Query: 100 SLDGNGF-LTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGV 157
           +L  +G  +T+ DNGRGIP++  PK+  K  LEII+TTLHAGGKF     Y+ SGGLHGV
Sbjct: 62  TLHDDGTRVTIEDNGRGIPIDTLPKY-KKPALEIIMTTLHAGGKFERGKNYKHSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS EL   V R   ++ Q + RG+P   ++K    R   GT ITF PDP+IFG
Sbjct: 121 GASVVNALSSELIAEVKRDGDLYQQTYERGVPTGKMKKAGSSRG-SGTIITFTPDPQIFG 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
            K  FDA  + +  ++K+YL   VK                    +    G+  YL   L
Sbjct: 180 KKQRFDAKHIAERLEAKSYLHRGVKLVLHDKLSKPNATHT-----YQHDQGIAEYLSKLL 234

Query: 278 ENRSLISSEIFTGK------TEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHE 331
            +R   +              E+ G     V         +  I SY N I T  GGTHE
Sbjct: 235 GDRQYPTVPTKMDGLYFERAGEEDGDIDLEVALVWTE-APDEYIRSYVNGIPTPAGGTHE 293

Query: 332 SGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
            GL+ A+ +G++ Y    +   + I++ ++D+    V ILS ++ +P+F GQTK +L + 
Sbjct: 294 QGLKSAVVKGMRNYMNTHKLVPKGITLTAEDIREGLVVILSCYVGDPQFQGQTKQRLNNT 353

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE--VNRKTAIRKLR 448
           +    V+ ALR   + Y  QN   A  ++  +I  +  R+  R   +    +     +L 
Sbjct: 354 EVSAQVDGALRPAIERYFNQNQNIAEAVVARMILAARARIASRAASQAVSRKTAVSHRLN 413

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS      +ELFIVEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A ++K+ 
Sbjct: 414 LPGKLADCSSTNPGDSELFIVEGDSAGGSAKQGRDRRTQAILPLRGKVLNAEQASTQKLL 473

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            N+++ D+V ALGC    +     LRY K+ ++ DAD DG HIA+LLLTFFY+ M  LI+
Sbjct: 474 ANKELSDIVSALGCGMGPKLDLSRLRYGKIFLLMDADADGHHIATLLLTFFYRHMRQLID 533

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             H++L  PPL+RI  G ++ +A D+ HK +IL   + +   K  I+RFKGLGEM  S L
Sbjct: 534 HGHVYLAQPPLYRIDLGKETFWALDDIHKDQILANARSN--AKPNITRFKGLGEMNPSVL 591

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           K+T +D   R+ LR+ + +       T  +I +LMG  A  R+  I +    +D++ 
Sbjct: 592 KKTTLDPRYRSALRITVPEGE--ALGTDQTIAQLMGKDASARYDIITDGIHEVDELD 646


>gi|239944798|ref|ZP_04696735.1| DNA topoisomerase IV subunit B [Streptomyces roseosporus NRRL
           15998]
 gi|239991263|ref|ZP_04711927.1| DNA topoisomerase IV subunit B [Streptomyces roseosporus NRRL
           11379]
 gi|291448262|ref|ZP_06587652.1| DNA topoisomerase IV subunit B [Streptomyces roseosporus NRRL
           15998]
 gi|291351209|gb|EFE78113.1| DNA topoisomerase IV subunit B [Streptomyces roseosporus NRRL
           15998]
          Length = 708

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 241/709 (33%), Positives = 349/709 (49%), Gaps = 53/709 (7%)

Query: 20  SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79
                         A      S NY A  + +LEGLE VR RPGMYIG TD + L H   
Sbjct: 1   MTAETSVPSTAMLAAAGGDRDSSNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLW 60

Query: 80  EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139
           E+IDN++DE + GY + IEV L  +  + V DNGRGIPV+  PK    S +E+++T LHA
Sbjct: 61  EIIDNSVDEALGGYCDQIEVILHDDASVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHA 119

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKF   +Y  SGGLHGVG SVVNALS  L V V R +   S  F RG+P    E+    
Sbjct: 120 GGKFGGGSYAASGGLHGVGASVVNALSARLDVEVDRSSATHSISFRRGVPGMFTEQGPDS 179

Query: 200 ---------------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244
                          + + GTR+ +  D +IF   A  +   L +  +  A+L   +   
Sbjct: 180 PFDPANGLRKGKRVPKTRTGTRVRYWADRQIFLKDAKLNLETLYQRARQTAFLVPGLTII 239

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------- 293
              ++ +  +      E F F GG+  + +   +++++   +  +G              
Sbjct: 240 VRDERGLDGEGKTE--ETFRFDGGISEFCEYLAQDKAVCDVQRLSGTGTFKETVPVLDDR 297

Query: 294 -----KKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
                 + T    V+ A+ W         S+ N I T +GGTH +G   +LT+ + +   
Sbjct: 298 GHMTATEVTRELGVDIALRWGTGYDTTVRSFVNIIATPKGGTHVTGFERSLTKTVNEALR 357

Query: 348 LTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
             +  R        DD +     +++V + EP+F GQTK  L +  A R V N +     
Sbjct: 358 SAKMLRVAEDDVVKDDALEGLTAVVTVRLAEPQFEGQTKEVLGTSAANRIVANVVAKELK 417

Query: 406 HYLVQNPIEATKLLEWVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
            +L     +A      V+E+           R+ +    RKTA+    LP KLADC  + 
Sbjct: 418 SFLTSTKRDAKAQARAVLEKAVAAARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDD 477

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +ELFIVEGDSA G+AK ARN   QA+LP+RGKILNV  +    +  N +   ++Q +
Sbjct: 478 VDRSELFIVEGDSALGTAKLARNSEFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVI 537

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           G  +   +  +  RY KVI+MTDADVDG+HI +LLLT F + M  ++E   +F   PPL 
Sbjct: 538 GAGSGRTFDIDAARYGKVIMMTDADVDGSHIRTLLLTLFQRYMRPMVEAGRVFAAVPPLH 597

Query: 581 RI-----TQGT-KSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAM 633
           RI      +G  K VY + +   ++ L EF +K+ + K  I R+KGLGEM A QL ET M
Sbjct: 598 RIELVQPKKGQDKYVYTYSDNELRQTLLEFQRKNVRIKESIQRYKGLGEMDADQLAETTM 657

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           D   RTL R+ I      L+ ++   + LMG +   R +FI   A+ +D
Sbjct: 658 DPRHRTLRRINIGD----LESSEQVFDLLMGNEVAPRKEFITSSAATLD 702


>gi|145631948|ref|ZP_01787702.1| DNA topoisomerase IV subunit B [Haemophilus influenzae R3021]
 gi|144982399|gb|EDJ89973.1| DNA topoisomerase IV subunit B [Haemophilus influenzae R3021]
          Length = 632

 Score =  535 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 249/646 (38%), Positives = 355/646 (54%), Gaps = 22/646 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + NY A  I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE +AG+A  IEV 
Sbjct: 2   TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRPNHLAQEVIDNSVDEALAGFATKIEVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  + V DNGRG+PV+ HP     S +E+ILT LHAGGKF N  YE +GGLHGVGIS
Sbjct: 59  LHPDQSIEVTDNGRGMPVDIHP-TEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ + + V R   ++   F  G  +  LE       +             + D A
Sbjct: 118 VVNALSERVDIQVKRNGEVYKIAFENGSKVEELEVIGTCGRRTTGTTVHFKPNPKYFDSA 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L   ++  +              ++ + +  GL  YL   +   
Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDK-------VNNTQDIWLYEDGLSDYLIEAVNGF 230

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +  + F G+ +        V WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 231 ETLPEKPFVGEFKG---TNEAVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGL 287

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              I+++ E      R + + +DD+      ILS+ +++ +FAGQTK +L S  +   V 
Sbjct: 288 LDAIREFCEFRNLLPRGVKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVS 347

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             L+D F  +L QN  +A KL E  I  ++ RLR    ++V RK  +    LPGKLADC 
Sbjct: 348 GVLKDAFSLWLNQNVQDAEKLAEIAISSAQRRLR--AAKKVVRKKLVSGPALPGKLADCG 405

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR+R  QA+LPLRGKILN      +++  + +I D+ 
Sbjct: 406 SQDLEKTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDIA 465

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG    S      LRY KV I+ DAD DG HIA+LL   F +    L++  H+++  P
Sbjct: 466 VALGIDPDSNDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMP 524

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI    +  YA DE  K+ IL+   K+ KGK  + RFKGLGEM  SQL+ET MD N 
Sbjct: 525 PLYRIDLNKEVFYALDENEKEAILDRL-KNKKGKPNVQRFKGLGEMNPSQLRETTMDPNT 583

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++  +   +   DT + ++ L+  K +++R  ++Q +   +D
Sbjct: 584 RRLVQLTYDLGEDQSSDTLELMDMLLAKKRSEDRKNWLQAKGDQVD 629


>gi|164510814|emb|CAK18891.1| topoisomerase IV subunit B [Staphylococcus pseudintermedius]
          Length = 637

 Score =  535 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 222/628 (35%), Positives = 336/628 (53%), Gaps = 29/628 (4%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIG TD++ LHHL  EV+DN++DE++ GY N I V+++ +  +TV DNGRG+P   H  
Sbjct: 1   MYIGSTDKRGLHHLVYEVVDNSVDEILNGYGNEINVTINEDESITVADNGRGMPTGTH-- 58

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
              K T+E+I T LHAGGKF    Y+ SGGLHGVG SVVNALS+ L V + R   IF Q+
Sbjct: 59  RSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSESLSVEIHRDGEIFEQQ 118

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           F+ G        K+    K GT +TF+PD +IF     F+   L +  Q  A+L   +K 
Sbjct: 119 FAHGGVPQTKLIKKGKTKKTGTTVTFKPDAEIFKSATSFNFETLSERLQESAFLLQNLKI 178

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
                +   E+      E +++  G+K ++    E + ++        T  +     + +
Sbjct: 179 TLEDRRVGKERS-----EVYHYEEGIKAFVSYVNEGKEVLHDVALFQGTANEIEVDVSFQ 233

Query: 304 WAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDD 361
           +   +   +  I S+ N + T +GGTHE G + A+TR   +YA        +  ++  +D
Sbjct: 234 YNDQY---SESIMSFVNNVRTKDGGTHEVGFKTAMTRVFNEYARRIGDLKAKDKNLEGND 290

Query: 362 LMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           +      I+SV I E   +F GQTK+KL + +A+  V+  + +    YL +    +  L+
Sbjct: 291 IREGLTAIISVRIPEHLLQFEGQTKSKLGTPEARSAVDAIVAEKLPFYLEEKGQLSKSLV 350

Query: 420 EWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           +  I+  + R   RK RE  R     K     L GKL           EL++VEGDSAGG
Sbjct: 351 KKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAGG 410

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+R  QA+LPLRGK++N   A  E I  N++I  ++  +G    + +  +D  Y 
Sbjct: 411 SAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGNDFNLKDSNYN 470

Query: 537 KVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG----TKSVYAH 592
           ++IIMTDAD DGAHI  LLLTFF++ M  L+    +++  PPL+++ +G     K  YA 
Sbjct: 471 RIIIMTDADTDGAHIQVLLLTFFFKYMRPLVMAGRVYIALPPLYKLEKGKGKNKKIAYAW 530

Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652
            +E  +K+  E  K       + R+KGLGEM   QL ET M+   RTL+RV+I+ ++ S 
Sbjct: 531 TDEELEKLQREMGK----GFVLQRYKGLGEMNPDQLWETTMNPETRTLIRVQIDDEVRSS 586

Query: 653 KDTQDSINKLMGTKADERFKFIQERASF 680
           +     ++ LMG K   R ++I+    F
Sbjct: 587 QR----VSTLMGDKVAPRREWIERHVQF 610


>gi|145639071|ref|ZP_01794679.1| DNA topoisomerase IV subunit B [Haemophilus influenzae PittII]
 gi|145272043|gb|EDK11952.1| DNA topoisomerase IV subunit B [Haemophilus influenzae PittII]
 gi|309751023|gb|ADO81007.1| DNA topoisomerase IV, subunit B [Haemophilus influenzae R2866]
          Length = 632

 Score =  535 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 249/646 (38%), Positives = 355/646 (54%), Gaps = 22/646 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + NY A  I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE +AG+A  IEV 
Sbjct: 2   TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRPNHLAQEVIDNSVDEALAGFATKIEVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  + V DNGRG+PV+ HP     S +E+ILT LHAGGKF N  YE +GGLHGVGIS
Sbjct: 59  LHPDQSIEVTDNGRGMPVDIHP-TEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ + + V R   ++   F  G  +  LE       +             + D A
Sbjct: 118 VVNALSERVDIQVKRNGEVYKIAFENGSKVEELEVIGTCGRRTTGTTVHFKPNPKYFDSA 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L   ++  +              ++ + +  GL  YL   +   
Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDK-------VNNTQDIWLYEDGLSDYLIEAVNGF 230

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +  + F G+ +        V WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 231 ETLPEKPFVGEFKG---TNEAVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGL 287

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              I+++ E      R + + +DD+      ILS+ +++ +FAGQTK +L S  +   V 
Sbjct: 288 LDAIREFCEFRNLLPRGVKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVS 347

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             L+D F  +L QN  +A KL E  I  ++ RLR    ++V RK  +    LPGKLADC 
Sbjct: 348 GVLKDAFSLWLNQNVQDAEKLAEIAISSAQRRLR--AAKKVVRKKLVSGPALPGKLADCG 405

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR+R  QA+LPLRGKILN      +++  + +I D+ 
Sbjct: 406 SQDLEKTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDIA 465

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG    S      LRY KV I+ DAD DG HIA+LL   F +    L++  H+++  P
Sbjct: 466 VALGIDPDSNDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMP 524

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI    +  YA DE  K+ IL+   K+ KGK  + RFKGLGEM  SQL+ET MD N 
Sbjct: 525 PLYRIDLNKEVFYALDENEKEAILDRL-KNKKGKPNVQRFKGLGEMNPSQLRETTMDPNT 583

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++  +   +   DT + ++ L+  K +++R  ++Q +   +D
Sbjct: 584 RRLVQLTYDLGEDQGSDTLELMDMLLAKKRSEDRKNWLQAKGDQVD 629


>gi|315633998|ref|ZP_07889287.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Aggregatibacter segnis
           ATCC 33393]
 gi|315477248|gb|EFU67991.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Aggregatibacter segnis
           ATCC 33393]
          Length = 634

 Score =  535 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 247/648 (38%), Positives = 355/648 (54%), Gaps = 22/648 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + + NY A+ I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE +AG+A  IE
Sbjct: 2   TMTTNYSANEITVLKDLEPVQLRPGMY---TDTTRPNHLAQEVIDNSVDEALAGFATKIE 58

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V L  +  + V DNGRG+PV+ HP     S +E+I++ LHAGGKF N  Y  SGGLHGVG
Sbjct: 59  VILHKDQSIEVTDNGRGMPVDIHP-VEKVSGVEVIMSKLHAGGKFSNKNYTFSGGLHGVG 117

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           ISVVNALS+ + VTV R   ++   F  G  +  L        +             + D
Sbjct: 118 ISVVNALSERVDVTVKRNGEVYKIAFENGQKVEDLTVIGTCGRRTTGTTVHFKPNPKYFD 177

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F  +RL  + ++KA L   ++  +       E         + +  GL  YL   + 
Sbjct: 178 SEKFSVSRLRHLLRAKAVLCSGLEIKFIDKVNDTEDT-------WLYQDGLNDYLMEAVN 230

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336
               +  + F G+ + +   +  V WA+ W  E  E    SY N I T  GGTH +GLR 
Sbjct: 231 GLVTLPEQPFIGEFKGE---KEAVSWALLWLPEGGELIGESYVNLIPTALGGTHVNGLRQ 287

Query: 337 ALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            L   ++++ E      R + + +DDL      +LS+ +++P+FAGQTK +L S  +   
Sbjct: 288 GLLDAMREFCEFRNLLPRGVKLTADDLWDRCAYVLSLKMQDPQFAGQTKERLSSRQSAVF 347

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           +   ++D F  +L QN   A  L +  I  ++ RLR    ++V RK  +    LPGKLAD
Sbjct: 348 IGGVVKDAFSLWLNQNVQTAELLADMAISSAQRRLR--AAKKVVRKKLVSGPALPGKLAD 405

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS    + TELF+VEGDSAGGSAKQAR R  QA+LPLRGKILN      E++  +Q++ D
Sbjct: 406 CSSQDINLTELFLVEGDSAGGSAKQAREREYQAILPLRGKILNTWEVSPEQVLASQEVHD 465

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  ALG    +      LRY KV I+ DAD DG HIA+LL   F +    L+EQ H+++ 
Sbjct: 466 IAVALGIDPDNDDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVEQGHVYVA 524

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+RI  G +  YA DE  K  IL+  K   KGK  + RFKGLGEM   QL+ET MD 
Sbjct: 525 MPPLYRIDLGKEVFYALDESEKDAILDRLKGK-KGKPNVQRFKGLGEMNPMQLRETTMDP 583

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           N R L+++         ++T ++++ L+  K A++R  ++Q +   +D
Sbjct: 584 NTRRLVQLTFEAQGEQSQETIETMDMLLAKKRAEDRKNWLQAKGDQVD 631


>gi|254516014|ref|ZP_05128074.1| DNA topoisomerase IV, B subunit [gamma proteobacterium NOR5-3]
 gi|219675736|gb|EED32102.1| DNA topoisomerase IV, B subunit [gamma proteobacterium NOR5-3]
          Length = 640

 Score =  535 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 257/661 (38%), Positives = 371/661 (56%), Gaps = 28/661 (4%)

Query: 30  PDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEV 89
           P S    +  A  +Y + SI +L GLEPVR RPGMY   TD    +HL  E+IDN++DE 
Sbjct: 2   PRSFQSGDFPAVSDYSSESIEVLTGLEPVRKRPGMY---TDTTRPNHLAQEIIDNSVDEA 58

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
           +AG+A  I+V L  +G L+  D+GRG+PV+ HP+   K  +E+IL TLHAGGKF +  Y+
Sbjct: 59  LAGFARQIDVVLHTDGSLSASDDGRGMPVDMHPEQ-KKPGVEVILCTLHAGGKFSSKNYQ 117

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRIT 208
            SGGLHGVG+SVVNALS +L VT+ R   +    F+ G   S LE  +   +   GT + 
Sbjct: 118 FSGGLHGVGVSVVNALSKQLTVTIRRDGEVHQMSFAGGEKTSELEVIDTCGKRNTGTNVR 177

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F PDP+ F     F   RL  + ++KA L   ++  +  +K+        EKEE+Y+  G
Sbjct: 178 FTPDPQYFDSIN-FSVPRLQHVLRAKAVLCPGLRVTFFDEKKN-------EKEEWYYEDG 229

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDE 326
           L  YL +  +  + + +E FTG           V+WA+ W  E  E    SY N I T +
Sbjct: 230 LTDYLLSATDGFTTLPTEPFTGSFSGSTE---AVDWAVQWLPEGGELITESYVNLIPTAQ 286

Query: 327 GGTHESGLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GGTH +GLR  L   ++ + E  +   R + +  DD+      +LS  + +P+F+GQTK 
Sbjct: 287 GGTHVNGLRTGLLDAMRDFCEIRSLLPRGVKLAPDDIWERCSYVLSSKLEDPQFSGQTKE 346

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIR 445
           +L S +A   V    +D F  +L Q+  +A  L E  I  ++ RLR    ++V RK    
Sbjct: 347 RLSSREAAAFVSGVAKDAFSLWLNQHTSDAEALAELCINTAQRRLR--SAKKVVRKKVSA 404

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS      TELF+VEGDSAGGSAKQAR+R  QA+LPLRGKILN     S+
Sbjct: 405 GPALPGKLADCSGEDISRTELFLVEGDSAGGSAKQARDREIQAILPLRGKILNTWEVDSQ 464

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           +I  +Q++ ++  ALG           LRY KV I+ DAD DG HIA+L+   F +    
Sbjct: 465 EILASQEVHNISIALGIDPADDDL-SGLRYGKVCILADADSDGLHIATLICALFVRHFRP 523

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEML 624
           L+   H+++  PPL+RI  G +  YA DE  KQ IL+  +   K GK+ + RFKGLGEM 
Sbjct: 524 LVSAGHVYVAMPPLYRIDIGKEVFYALDEAEKQGILDRIEAEKKRGKVNVQRFKGLGEMN 583

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDD 683
             QL+ET M  + R L+++ +     +  +T + ++ L+  K A +R  +++ +    + 
Sbjct: 584 PLQLRETTMSPDTRRLVQLRLE----AGDETNEMLDMLLAKKRAGDRKSWLETKGDLAEV 639

Query: 684 V 684
           +
Sbjct: 640 L 640


>gi|71894602|ref|YP_278710.1| topoisomerase IV subunit B [Mycoplasma synoviae 53]
 gi|71851390|gb|AAZ43999.1| topoisomerase IV subunit B [Mycoplasma synoviae 53]
          Length = 641

 Score =  535 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 239/655 (36%), Positives = 359/655 (54%), Gaps = 30/655 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
            ++ Y A SI+ L+GLE VR RPGMYIGG D   LHHL +E++DN++DE +AGYA+ I V
Sbjct: 2   PNNLYTAESIKKLKGLEAVRKRPGMYIGGADIHGLHHLVAEIVDNSIDEALAGYASEITV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +  ++V DNGRGIPVE   K   K+ +E++ T LHAGGKF + +Y+ SGGLHGVG 
Sbjct: 62  TLHSDLSVSVFDNGRGIPVEKV-KGEFKTAVELVFTELHAGGKFSSDSYKTSGGLHGVGS 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L V V+R +  +   F +   +     +  ++ KRGT + F PD K F   
Sbjct: 121 SVVNALSSKLEVIVSRNDKSYKTAFIQ-DSIVEKTHEIPLQFKRGTLVKFWPDYK-FFKD 178

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
           A  + + + +  +  ++L   +K     + +  +       E +    GL+ +L     +
Sbjct: 179 ARLNFSTIAERLKESSFLVSNLKITIIDEIKNHK-------EVYQSQKGLEEFLDFINGS 231

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVAL 338
           +S+IS  +   +T K       VE+A  + ++    I S+ N + T +GG+HE+G++ A 
Sbjct: 232 KSVISKPVSYKETLKN----IEVEFAFQYSDDYSSIILSFVNNVKTIDGGSHEAGIKSAF 287

Query: 339 TRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395
            + I  YA      K+      +D+      ILS+ I E   EF GQTK+KL + +A+  
Sbjct: 288 VKVINDYAFKEAFIKKQNIFDFEDIKEGLSLILSLKIPENLLEFVGQTKSKLGTTEARHI 347

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA---IRKLRLPGK 452
           VE       + + + N  EA  ++  +    E RL  RK+R+ NRK+      K  L  K
Sbjct: 348 VEEIATKKLEIWFLDNKKEAKNIVNKIKNAYEIRLEERKRRQENRKSKNILKEKYILSDK 407

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L           ELF+VEGDSAGGSAK  RNR+ QA+LPLRGK++N   +    I  N +
Sbjct: 408 LTPAMSKNPLEKELFLVEGDSAGGSAKSGRNRNFQAILPLRGKVINSEKSKMLDILENTE 467

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++ ++G      +     +Y K+IIMTDAD DGAHI  LLLTFFY+ M  LIE   +
Sbjct: 468 IATIINSIGAGFGKDFDSSKAQYNKIIIMTDADTDGAHIQILLLTFFYRFMRKLIEDGKI 527

Query: 573 FLISPPLFRITQGTK--SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++   PL+++T  +K    YA D+   + ILE   K+ +   EI R+KGLGEM + QL E
Sbjct: 528 YIALAPLYKVTYKSKNQYYYAWDDSELKDILE---KNAQSSYEIQRYKGLGEMNSDQLWE 584

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T M+   RTL++  I+  +      +  ++ LMG     R ++I    +F +D  
Sbjct: 585 TTMNPETRTLIKATISDAI----LAEKRVSTLMGDNVKIRKEWIDNNVNFSNDDD 635


>gi|239621278|ref|ZP_04664309.1| DNA gyrase subunit B [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|239515739|gb|EEQ55606.1| DNA gyrase subunit B [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 758

 Score =  535 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 239/756 (31%), Positives = 342/756 (45%), Gaps = 118/756 (15%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
             + Y A  + +LEGL+ VR RPGMYIG TD + L H   E+IDN++DE +AG+ N I V
Sbjct: 2   PKEEYGAKDLAVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNSVDEALAGFCNDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G + V DNGRGIPV+  PK    S +E++LT LHAG KF NS+Y   GGLHGVG 
Sbjct: 62  TLHTDGSVEVADNGRGIPVDKEPK-TGLSGVEVVLTKLHAGAKFGNSSYNAVGGLHGVGS 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPL------------------------SPLEK 195
           SVVNALS  L V V R        F +G P                         + LE 
Sbjct: 121 SVVNALSSRLDVEVDRDGKTHHMTFHQGHPGVYTDADPANPSPDSPFKRTRKNRPTELEI 180

Query: 196 KEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA-- 252
             KV     GTRI +  DP+IF   A F   +L+   +  ++L   +K     +      
Sbjct: 181 IGKVSPKTTGTRIRYWYDPEIFNKTAEFSYEQLIDRVRQTSFLVPGLKITIIDENVPETA 240

Query: 253 ---------------------------EKYGIPEKEEF---------------------- 263
                                      +    P +E+F                      
Sbjct: 241 ATDTVEATDDATVEPAQDQAPALDVSSDDAESPAEEDFSLTAGDQVVDGAFGEQPAHPRV 300

Query: 264 ---YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR----------------GTVEW 304
                 GG+K ++    +   +       G+   K   +                  V+ 
Sbjct: 301 VEFLHTGGVKDFVDFLSKGEPISDIWRIQGEGTYKEETQAVGEGGELHAQEIERTCGVDI 360

Query: 305 AIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII----- 358
           A+ W       I S+ N + T  GGTH  G   A+T+ I+K  E    K  +++      
Sbjct: 361 ALRWVNGYDTTIMSFVNIVETPGGGTHVDGFMNAITKQIRKAVEDNARKLKVNMKDSAMK 420

Query: 359 --SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
              DD+    V +++  + EP+F GQTK  L +   +  V       F   +  +     
Sbjct: 421 VERDDIQAGLVAVVTARVAEPQFQGQTKDVLGTAQVKPIVTRLTDKQFGEMITGSKRGYK 480

Query: 417 KL----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           +     LE ++     R++ RK +E   RK A+    +P KL+DC        ELFIVEG
Sbjct: 481 EQSGRVLEKIVGEMHARIQSRKAKEVTRRKNALESASMPAKLSDCQPGNDDVAELFIVEG 540

Query: 472 DSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE 531
           DSA G+AK ARN   QA+LP+RGKILNV  A   ++ +N++   ++Q +G  +   +  E
Sbjct: 541 DSALGTAKAARNAGFQALLPIRGKILNVQKASITQMLSNKECAAIIQVVGAGSGQSFDIE 600

Query: 532 DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI----TQGTK 587
             RY K+I+MTDADVDGAHI  LLLT FY+ M  LIE  +++   PPL RI    +   +
Sbjct: 601 QSRYHKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGYVYAAVPPLHRIALTGSHKGE 660

Query: 588 SVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646
            +Y + ++     L +  KKH     +I R+KGLGEM A QL +T MD   R L R+ + 
Sbjct: 661 YIYTYSDDELAGKLADLDKKHIGYNDDIQRYKGLGEMDADQLADTTMDPRTRMLRRIRME 720

Query: 647 KDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
                     +  + LMG     R +FI + A   D
Sbjct: 721 D----AAQASEIFSLLMGDDVPPRKQFIVDNADDFD 752


>gi|260583321|ref|ZP_05851095.1| DNA topoisomerase IV, B subunit [Haemophilus influenzae NT127]
 gi|260093634|gb|EEW77548.1| DNA topoisomerase IV, B subunit [Haemophilus influenzae NT127]
          Length = 632

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 249/646 (38%), Positives = 355/646 (54%), Gaps = 22/646 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + NY A  I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE +AG+A  IEV 
Sbjct: 2   TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRPNHLAQEVIDNSVDEALAGFATKIEVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  + V DNGRG+PV+ HP     S +E+ILT LHAGGKF N  YE +GGLHGVGIS
Sbjct: 59  LHPDQSIEVTDNGRGMPVDIHP-TEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ + + V R   ++   F  G  +  LE       +             + D A
Sbjct: 118 VVNALSERVDIQVKRNGEVYKIAFENGSKVEELEVIGTCGRRTTGTTVHFKPNPKYFDSA 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L   ++  +              ++ + +  GL  YL   +   
Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDK-------VNNTQDIWLYEDGLSDYLIEAVNGF 230

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +  + F G+ +        V WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 231 ETLPEKPFVGEFKG---ANEAVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGL 287

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              I+++ E      R + + +DD+      ILS+ +++ +FAGQTK +L S  +   V 
Sbjct: 288 LDAIREFCEFRNLLPRGVKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVS 347

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             L+D F  +L QN  +A KL E  I  ++ RLR    ++V RK  +    LPGKLADC 
Sbjct: 348 GVLKDAFSLWLNQNVQDAEKLAEIAISSAQRRLR--AAKKVVRKKLVSGPALPGKLADCG 405

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR+R  QA+LPLRGKILN      +++  + +I D+ 
Sbjct: 406 SQDLEKTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDIA 465

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG    S      LRY KV I+ DAD DG HIA+LL   F +    L++  H+++  P
Sbjct: 466 VALGIDPDSNDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMP 524

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI    +  YA DE  K+ IL+   K+ KGK  + RFKGLGEM  SQL+ET MD N 
Sbjct: 525 PLYRIDLNKEVFYALDESEKEAILDRL-KNKKGKPNVQRFKGLGEMNPSQLRETTMDPNT 583

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++  +   +   DT + ++ L+  K +++R  ++Q +   +D
Sbjct: 584 RRLVQLTYDLGEDQGSDTLELMDMLLAKKRSEDRKNWLQAKGDQVD 629


>gi|168186943|ref|ZP_02621578.1| DNA gyrase subunit B [Clostridium botulinum C str. Eklund]
 gi|169295143|gb|EDS77276.1| DNA gyrase subunit B [Clostridium botulinum C str. Eklund]
          Length = 652

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 217/663 (32%), Positives = 344/663 (51%), Gaps = 34/663 (5%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +   ++YD + +  LE LEPVR+RPGMYIG T  K LHH   E++DN++DE+  GY N 
Sbjct: 5   QEKNKNSYDVTDLTSLEKLEPVRVRPGMYIGSTGTKGLHHCIWEILDNSIDEIANGYGNK 64

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           + + L+ +  +T++DNGRGIP   HP    KS +E++ T LH GGKF+N  Y+ SGGLHG
Sbjct: 65  VVLILNKDKSVTIMDNGRGIPTGIHP-IKKKSGVEMVFTELHTGGKFNNKNYKTSGGLHG 123

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV----------RNKRGTR 206
           VG +VVNALS+ L V V ++  ++ Q+F      S  +K               +K GT+
Sbjct: 124 VGAAVVNALSEWLEVEVYQKGHVYKQRFEYAEDKSLNKKMPGTPIFPLKIAGDTDKTGTK 183

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           ITF+PD ++F     F    + +  Q  A+ +  +      +++            ++  
Sbjct: 184 ITFKPDKEVFSTT-EFKFEVIDERLQELAFQNKGITLVVKDERKEEVIEKE-----YHSE 237

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GL  ++    E++  I  +    + EK+  + +   E  I + + +   I SY N I T
Sbjct: 238 RGLLDFIDYLNESKIPIHKDPLLYEGEKEVNSIKVYCEVCIQFTDSSTENIASYVNNIPT 297

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            E GTHE+G +  +TR  K++A+      ++      DDL      IL V I  P F GQ
Sbjct: 298 TESGTHETGFKTGMTRIFKEWAKKLNILKEKDKGFEGDDLREGMTAILRVKISNPIFEGQ 357

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TKTKL + +A   +          ++  N   AT+++   +  +  R + +K  +   +K
Sbjct: 358 TKTKLGNNEAYTVMNELAYIKIGEWIEDNKEIATQIINNAVSAAARREKIKKINDAEKKK 417

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
                  L GK++ C+       E  +VEGDSAGGSAKQAR+R  Q ++P +GKI+N   
Sbjct: 418 VGKGTAPLAGKVSICTLKRPEFCEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEK 477

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
              E +  ++++     A+G      Y E+DL+Y+K+II++DADVDG HI +L +T+ Y+
Sbjct: 478 QRLENVLASEELKLFNAAIGTGVLENYNEDDLKYDKIIILSDADVDGYHIRTLWITYIYR 537

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
            M  LI   HL++  PPL+++ + +K    S YA+ +E      +E  K       I R+
Sbjct: 538 YMRSLITNGHLYIALPPLYKVYKNSKKGEVSKYAYSDEELNSAKKEIGKGAL----IQRY 593

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           KGLGEM   QL +T ++   RTL ++ I          +  I+ LMG   + R  ++ + 
Sbjct: 594 KGLGEMNPDQLWDTTLNPETRTLQQITIED----AAKAEKMISLLMGDVVEPRRNYMYKY 649

Query: 678 ASF 680
           A F
Sbjct: 650 AEF 652


>gi|188588859|ref|YP_001920142.1| DNA topoisomerase IV subunit B [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188499140|gb|ACD52276.1| DNA gyrase subunit B [Clostridium botulinum E3 str. Alaska E43]
          Length = 649

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 227/661 (34%), Positives = 349/661 (52%), Gaps = 36/661 (5%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
            ++NYD + +  LE LEPVR+RPGMYIG T  K LHH   E++DNA+DE+  GY + + +
Sbjct: 4   KNNNYDVTDLTSLEKLEPVRIRPGMYIGSTGTKGLHHCIWEILDNAIDEITNGYGDKVTI 63

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L+ +   T+ DNGRGIP   HP    KS +E++ T LH GGKFDN  Y+ SGGLHGVG 
Sbjct: 64  ILNEDKSATIYDNGRGIPTGIHP-IKKKSGVEMVFTELHTGGKFDNKNYKTSGGLHGVGA 122

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTRIT 208
           +VVNALS  + V V + + I+ Q+F             G P+S L+   K  +K GT++T
Sbjct: 123 AVVNALSKWVEVEVYQNSNIYRQRFEYAFDKELKRSMPGTPVSKLQAIGKT-DKTGTKVT 181

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F+PD +IF     F    +    Q  A+ +  ++      ++  E         +Y   G
Sbjct: 182 FKPDSEIFSS-TDFKFDVIDSRLQELAFQNKGIRLELIDRRKDEEIQKE-----YYSENG 235

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEENPEIT-SYCNTILTDE 326
           L  ++    E++++I         E+     +   E  I + + + E   SY N I T E
Sbjct: 236 LLDFINYLNESKTVIHETPIIFDGERTVNNLQVQGEICIQFTDSSTEYIASYVNNIPTTE 295

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
            GTHE+G +  +TR  K+ A+      ++      +DL      IL + I  P F GQTK
Sbjct: 296 AGTHETGFKTGMTRAFKEGAKRLNLIKEKDKEFEGNDLREGMTAILRIKITNPIFEGQTK 355

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
           TKL + +A   + + +      ++  N   AT L+   +E ++ R + +K  +   +K  
Sbjct: 356 TKLGNNEAYTMMNDLVYTKLLEWIEDNKELATTLISNALESAKRREKIKKINDAEKKKVG 415

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    L GK+A C+       E  +VEGDSAGGSAKQAR+R  Q ++P +GKI+N     
Sbjct: 416 VGTAPLAGKIAVCTLKDKSVNEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQK 475

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            E +  ++++     A+G  T   Y+++D++Y+KVIIM+DADVDG HI +L +T+ Y+ M
Sbjct: 476 LENVLASEELRIFNAAIGTGTLENYKQDDMKYDKVIIMSDADVDGYHIRTLWMTYIYRYM 535

Query: 564 YDLIEQKHLFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
             LI   HL+L  PPL+++ +  K      YA+ +E  +K  +E  K       I R+KG
Sbjct: 536 RSLIANGHLYLAQPPLYKVYKVNKGSETVKYAYSDEELEKAKKEIGKGAL----IQRYKG 591

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679
           LGEM   QL ET ++   RTL++V I+         +  I+ LMG   + R  ++ +   
Sbjct: 592 LGEMNPEQLWETTLNPETRTLIQVTIDD----AAKAEKMISLLMGDVVEPRKNYMYKYGE 647

Query: 680 F 680
           F
Sbjct: 648 F 648


>gi|269115287|ref|YP_003303050.1| Topoisomerase IV subunit B [Mycoplasma hominis]
 gi|21903715|gb|AAC33841.2| topoisomerase IV subunit [Mycoplasma hominis ATCC 23114]
 gi|268322912|emb|CAX37647.1| Topoisomerase IV subunit B [Mycoplasma hominis ATCC 23114]
          Length = 639

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 223/648 (34%), Positives = 351/648 (54%), Gaps = 32/648 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+AS +++L+GL+ VR RPGMYIG TD   LHHL  E+ DNA+DE ++G+AN I V+L
Sbjct: 4   NNYEASDLKVLKGLDAVRKRPGMYIGSTDSSGLHHLIWEIFDNAIDEALSGFANKIIVTL 63

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  + V DNGRGIPV  H     KS +E++ T LHAGGKF +  Y+ SGGLHGVG SV
Sbjct: 64  KKDSSVIVEDNGRGIPVNKHE--SGKSGVELVFTELHAGGKFGDGAYKTSGGLHGVGSSV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS ++ VTV R    +   F +   +    +      + GT++ F  D  IF   + 
Sbjct: 122 VNALSSKVEVTVWRDKKAYFTAFQQDTIIEKTHEISPTTKQ-GTKVQFWADFSIFKK-SK 179

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +    + +  +  ++L   +   +  +          E   F    G+K Y+    E + 
Sbjct: 180 YSPEIIKEKLREASFLMPNLTIEFYNE-------NTDEHVTFKTKDGIKEYINFVGEGKK 232

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            IS   +         +   ++ A+ + +     I S+ N + T +GGTHE+ L+ ALT+
Sbjct: 233 FISEIFYASGM---CNYGIEIDLALVYTDGYSESIYSFVNNVKTRDGGTHETALKTALTK 289

Query: 341 GIKKYAELTQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVEN 398
            I  YA      + I+    D+    + ++S+ + E   EF GQTK KL + +A+  VE+
Sbjct: 290 TINDYASKNGLAKKITFEGSDVREGIIAVISLKVPEEILEFVGQTKDKLGTPEAREVVED 349

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIR---KLRLPGKLAD 455
            +   F  +L +N IEA K++  + +  E ++  R  +   RK   +   +  L GKL  
Sbjct: 350 FVSQKFYFFLNENKIEAEKIISKIKKAYEAKVAARNAKNEARKIKNKFENRKILSGKLTP 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
                    ELF+VEGDSAGGSAK  RNR  QA+LPLRGK++N   A    +  N++I  
Sbjct: 410 AQSKNPAVKELFLVEGDSAGGSAKLGRNRVTQAILPLRGKVINTDKAKLSDVLANEEIAT 469

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++  +G      +  ++ +Y K+IIMTDAD DGAHI +LLLTFF++ M  L+E   +++ 
Sbjct: 470 IINTIGAGIGEDFNLKNAQYHKIIIMTDADTDGAHIQTLLLTFFWRYMKKLVENGMVYIA 529

Query: 576 SPPLFRI---TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
            PPL++I   ++ T+ +YA DE+  ++I  ++        EI R+KGLGEM A QL ET 
Sbjct: 530 LPPLYKISIKSKNTQPLYAWDEDQLKEITSKYTN-----YEIQRYKGLGEMNADQLWETT 584

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           M+   R++++V++  ++      + +++ LM      R ++I     F
Sbjct: 585 MNPETRSIIKVDVEDEI----LVERNVSTLMSDDVIARKQWINNNVDF 628


>gi|251778309|ref|ZP_04821229.1| DNA gyrase subunit B [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082624|gb|EES48514.1| DNA gyrase subunit B [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 649

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 227/661 (34%), Positives = 351/661 (53%), Gaps = 36/661 (5%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
            ++NYD + +  LE LEPVR+RPGMYIG T  K LHH   E++DNA+DE+  GY + + +
Sbjct: 4   KNNNYDVTDLTSLEKLEPVRIRPGMYIGSTGTKGLHHCIWEILDNAIDEITNGYGDKVTI 63

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L+ +   T+ DNGRGIP   HP    KS +E++ T LH GGKFDN  Y+ SGGLHGVG 
Sbjct: 64  ILNEDKSATIYDNGRGIPTGIHP-IKKKSGVEMVFTELHTGGKFDNKNYKTSGGLHGVGA 122

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTRIT 208
           +VVNALS  + V V + + I+ Q+F             G P+S L+   K  +K GT++T
Sbjct: 123 AVVNALSKWVEVEVYQNSNIYRQRFEYAFDKELKRSMPGTPVSKLQAIGKT-DKTGTKVT 181

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F+PD +IF     F    +    Q  A+ +  ++      ++  E         +Y   G
Sbjct: 182 FKPDSEIFSS-TDFKFDVIDSRLQELAFQNKGIRLELIDRRKDEEIQKE-----YYSENG 235

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPEIT-SYCNTILTDE 326
           L  ++    E++++I         E+  ++ +   E  I + + + E   SY N I T E
Sbjct: 236 LLDFINYLNESKTVIHETPIIFDGERTVSNLQVQGEICIQFTDSSTEYIASYVNNIPTTE 295

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
            GTHE+G +  +TR  K+ A+      ++      +DL      IL + I  P F GQTK
Sbjct: 296 AGTHETGFKTGMTRAFKEGAKRLNLIKEKDKEFEGNDLREGMTAILRIKITNPIFEGQTK 355

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
           TKL + +A   + + +      ++  N   AT L+   +E ++ R + +K  +   +K  
Sbjct: 356 TKLGNNEAYTMMNDLVYTKLLEWIEDNKELATTLISNALESAKRREKIKKINDAEKKKVG 415

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    L GK+A C+       E  +VEGDSAGGSAKQAR+R  Q ++P +GKI+N     
Sbjct: 416 VGTAPLAGKIAVCTLKDKSVNEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQK 475

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            E +  ++++     A+G  T   Y+++D++Y+KVIIM+DADVDG HI +L +T+ Y+ M
Sbjct: 476 LENVLASEELRIFNAAIGTGTLENYKQDDMKYDKVIIMSDADVDGYHIRTLWMTYIYRYM 535

Query: 564 YDLIEQKHLFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
             LI   HL+L  PPL+++ +  K      YA+ +E  +K  +E  K       I R+KG
Sbjct: 536 RSLIANGHLYLAQPPLYKVYKVNKGSETVKYAYSDEELEKAKKEIGKGAL----IQRYKG 591

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679
           LGEM   QL ET ++   RTL++V I+         +  I+ LMG   + R  ++ +   
Sbjct: 592 LGEMNPEQLWETTLNPETRTLIQVTIDD----AAKAEKMISLLMGDVVEPRKNYMYKYGE 647

Query: 680 F 680
           F
Sbjct: 648 F 648


>gi|319897148|ref|YP_004135343.1| DNA topoisomerase iv, subunit b [Haemophilus influenzae F3031]
 gi|317432652|emb|CBY81015.1| DNA topoisomerase IV, subunit B [Haemophilus influenzae F3031]
          Length = 632

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 249/646 (38%), Positives = 355/646 (54%), Gaps = 22/646 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + NY A  I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE +AG+A  IEV 
Sbjct: 2   TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRPNHLAQEVIDNSVDEALAGFATKIEVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  + V DNGRG+PV+ HP     S +E+ILT LHAGGKF N  YE +GGLHGVGIS
Sbjct: 59  LHPDQSIEVTDNGRGMPVDIHP-TEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ + + V R   ++   F  G  +  LE       +             + D A
Sbjct: 118 VVNALSERVDIQVKRNGEVYKIAFENGSKVEELEIIGTCGRRTTGTTVHFKPNPKYFDSA 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L   ++  +              ++ + +  GL  YL   +   
Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDK-------VNNTQDIWLYEDGLSDYLIEAVNGF 230

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
            ++  + F G+ +        V WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 231 EILPEKPFVGEFKG---ANEAVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGL 287

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              I+++ E      R + + +DD+      ILS+ +++ +FAGQTK +L S  +   V 
Sbjct: 288 LDAIREFCEFRNLLPRGVKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVS 347

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             L+D F  +L QN  +A KL E  I  ++ RLR    ++V RK  +    LPGKLADC 
Sbjct: 348 GVLKDAFSLWLNQNVQDAEKLAEIAISSAQRRLR--AAKKVVRKKLVSGPALPGKLADCG 405

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR+R  QA+LPLRGKILN      +++  + +I D+ 
Sbjct: 406 SQDLEKTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDIA 465

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG    S      LRY KV I+ DAD DG HIA+LL   F +    L++  H+++  P
Sbjct: 466 VALGIDPDSNDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMP 524

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI    +  YA DE  K+ IL+   K+ KGK  + RFKGLGEM  SQL+ET MD N 
Sbjct: 525 PLYRIDLNKEVFYALDENEKEAILDRL-KNKKGKPNVQRFKGLGEMNPSQLRETTMDPNT 583

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++  +       DT + ++ L+  K +++R  ++Q +   +D
Sbjct: 584 RRLVQLTYDLGEEQGSDTLELMDMLLAKKRSEDRKNWLQAKGDQVD 629


>gi|164510811|emb|CAK18889.1| topoisomerase IV subunit B [Staphylococcus pseudintermedius]
          Length = 637

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 222/628 (35%), Positives = 336/628 (53%), Gaps = 29/628 (4%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIG TD++ LHHL  EV+DN++DE++ GY N I V+++ +  +TV DNGRG+P   H  
Sbjct: 1   MYIGSTDKRGLHHLVYEVVDNSVDEILNGYGNEINVTINEDESITVADNGRGMPTGTH-- 58

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
              K T+E+I T LHAGGKF    Y+ SGGLHGVG SVVNALS+ L V + R   IF Q+
Sbjct: 59  RSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSESLSVEIHRDGEIFEQQ 118

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           F+ G        K+    K GT +TF+PD +IF     F+   L +  Q  A+L   +K 
Sbjct: 119 FAHGGVPQTKLIKKGKTKKTGTTVTFKPDAEIFKSATSFNFETLSERLQESAFLLQNLKI 178

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
                +   E+      E +++  G+K ++    E + ++        T  +     + +
Sbjct: 179 TLEDRRVGKERS-----EVYHYEEGIKAFVSYVNEGKEVLHDVALFQGTANEIEVDVSFQ 233

Query: 304 WAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDD 361
           +   +   +  I S+ N + T +GGTHE G + A+TR   +YA        +  ++  +D
Sbjct: 234 YNDQY---SESIMSFVNNVRTKDGGTHEVGFKTAMTRVFNEYARRIGDLKAKDKNLEGND 290

Query: 362 LMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           +      I+SV I E   +F GQTK+KL + +A+  V+  + +    YL +    +  L+
Sbjct: 291 IREGLTAIISVRIPEHLLQFEGQTKSKLGTPEARSAVDAIVAEKLPFYLEEKGQLSKSLV 350

Query: 420 EWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           +  I+  + R   RK RE  R     K     L GKL           EL++VEGDSAGG
Sbjct: 351 KKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAGG 410

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+R  QA+LPLRGK++N   A  E I  N++I  ++  +G    + +  +D  Y 
Sbjct: 411 SAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGMGNDFNLKDSNYN 470

Query: 537 KVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG----TKSVYAH 592
           ++IIMTDAD DGAHI  LLLTFF++ M  L+    +++  PPL+++ +G     K  YA 
Sbjct: 471 RIIIMTDADTDGAHIQVLLLTFFFKYMRPLVMAGRVYIALPPLYKLEKGKGKNKKIAYAW 530

Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652
            +E  +K+  E  K       + R+KGLGEM   QL ET M+   RTL+RV+I+ ++ S 
Sbjct: 531 TDEELEKLQREMGK----GFVLQRYKGLGEMNPDQLWETTMNPETRTLIRVQIDDEVRSS 586

Query: 653 KDTQDSINKLMGTKADERFKFIQERASF 680
           +     ++ LMG K   R ++I+    F
Sbjct: 587 QR----VSTLMGDKVAPRREWIERHVQF 610


>gi|312958632|ref|ZP_07773152.1| DNA topoisomerase IV, B subunit [Pseudomonas fluorescens WH6]
 gi|311287175|gb|EFQ65736.1| DNA topoisomerase IV, B subunit [Pseudomonas fluorescens WH6]
          Length = 634

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 243/655 (37%), Positives = 369/655 (56%), Gaps = 28/655 (4%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
              ++ +Y+A +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A  
Sbjct: 2   ATPSASSYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHAKS 58

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           + V L  +  L V D+GRG+PV+ HP+    S +E+ILT LHAGGKF N  Y+ SGGLHG
Sbjct: 59  VHVILHADHSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGLHG 117

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKI 215
           VGISVVNALS  + V V R    +   F+ G   + L+    V +   GT + F PDPK 
Sbjct: 118 VGISVVNALSTLVRVKVKRDGNEYEMTFADGYKATDLQVIGTVGKRNTGTSVYFAPDPKY 177

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     F  +RL  + ++KA L   +   +          G  EK E+++  GL++YL+ 
Sbjct: 178 FDSP-KFSISRLKHVLKAKAVLCPGLLVTFEDK-------GTGEKVEWHYEDGLRSYLED 229

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESG 333
            + +   + +E F G        +  V+WA+ W  E  +    SY N I T +GGTH +G
Sbjct: 230 SVSDFERLPNEPFCGSLAGN---KEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHVNG 286

Query: 334 LRVALTRGIKKYAEL-TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           LR  L   ++++ E  +   R + +  +D+      +LS+ ++EP+F+GQTK +L S +A
Sbjct: 287 LRQGLLDAMREFCEYRSLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREA 346

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
              V   ++D F  +L ++P     L E  I  +  RL+    ++V RK   +   LPGK
Sbjct: 347 AAFVSGVVKDAFSLWLNEHPELGLALAELAINNAGRRLK--ASKKVERKRITQGPALPGK 404

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC+      +ELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN       ++  +Q+
Sbjct: 405 LADCAGQDPMRSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGSEVLASQE 464

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           + ++  A+G    +      LRY K+ I+ DAD DG HIA+LL   F Q    L++  H+
Sbjct: 465 VHNIAVAIGVDPGAADM-TQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHV 523

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKET 631
           ++  PPL+RI  G +  YA DE  +  IL+    +  +GK +++RFKGLGEM   QL+ET
Sbjct: 524 YVAMPPLYRIDLGKEIFYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRET 583

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDVG 685
            MD N R L+++ +         T + ++ L+  K A +R  +++ + +  + +G
Sbjct: 584 TMDPNTRRLVQLTLED----FAATSEMMDMLLAKKRAPDRKSWLESKGNLAEVLG 634


>gi|239917827|ref|YP_002957385.1| putative glutamate--cysteine ligase/putative amino acid ligase
           [Micrococcus luteus NCTC 2665]
 gi|239839034|gb|ACS30831.1| putative glutamate--cysteine ligase/putative amino acid ligase
           [Micrococcus luteus NCTC 2665]
          Length = 701

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 234/699 (33%), Positives = 335/699 (47%), Gaps = 60/699 (8%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
            A+  Y+A  + +LEGLE VR RPGMYIG TD + L H   E+IDN++DE +AG+   IE
Sbjct: 2   PANTEYNARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALAGFGQSIE 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           ++L  +G + V DNGRGIPV+  P+    S +E++ T LHAGGKF   +Y  SGGLHGVG
Sbjct: 62  ITLHPDGSVEVEDNGRGIPVDVEPR-TGLSGVEVVFTKLHAGGKFGGGSYAASGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE---------------------KKE 197
            SVVNALS  L V V R   +    F RG P    +                       +
Sbjct: 121 ASVVNALSSRLDVQVLRGGKVHQMSFRRGEPGRFQDGSRPSPDAPFEPSTDASPLDVVGK 180

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK--Y 255
             R + GTR+ +  D +IF   A F A  L    +  AYL   ++      +        
Sbjct: 181 AKRGQTGTRVRYWADEQIFVKDATFSAEELQARARQTAYLIPGLRITVKDLRRRPGTPGA 240

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT----------------EKKGTHR 299
             P +E F + GG+  +++       +       G                   +     
Sbjct: 241 DGPVEEVFQYDGGISEFVEHLTPATPVTDVWRIQGSGTFKERVPVLGEDGRTSMQDVQRT 300

Query: 300 GTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIK---KYAELTQNKRAI 355
             V+ A+ W      +  S+ N I T +GGTH+SG   AL +  +   +         + 
Sbjct: 301 CEVDVALRWDVGYDTVFRSFVNIIATPKGGTHQSGFEAALLKVFRAQVEANARRLKAGSD 360

Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415
            +  DD++     +L+V + EP+F GQTK  L +   +R V   +       L       
Sbjct: 361 KVEKDDVLAGMTAVLTVRLAEPQFEGQTKEILGTSAVRRIVSQVVEKQLTARLTSTARAQ 420

Query: 416 TKLLE----WVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
            + +      V+   + R+  R  +    RK A+    +P KLADC  N    +ELFIVE
Sbjct: 421 KQQVHTLLEKVVAEMKSRISARTHKENQRRKNALETSTMPAKLADCRSNDVASSELFIVE 480

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530
           GDSA G+AK AR+   QA+LP+RGKILNV  A    I  N +   L+Q +G      +  
Sbjct: 481 GDSALGTAKLARSSDFQALLPIRGKILNVQKASVSDILANAECAALIQVVGGGAGRSFDL 540

Query: 531 EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI---TQG-- 585
           +  RY KV++MTDADVDGAHI +LLLT F++ M  ++E   ++   PPL RI   T+G  
Sbjct: 541 DAARYGKVVLMTDADVDGAHIRTLLLTLFFRYMRPMVEAGRVYAAVPPLHRIEAVTRGVK 600

Query: 586 -TKSVYAHDEEHKQKILEEFKKHGKGKIE-ISRFKGLGEMLASQLKETAMDANKRTLLRV 643
             + +Y + E+     L   ++ G+   E I R+KGLGEM A QL ET MD   R L RV
Sbjct: 601 EREVIYTYSEQELHATLARLEQEGRSYREPIQRYKGLGEMDADQLAETTMDPRHRMLRRV 660

Query: 644 EINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            I      ++  +   + LMG+    R  FI   A  +D
Sbjct: 661 NI----AEVEAAERVFDLLMGSAVAPRKDFIISHADELD 695


>gi|289706927|ref|ZP_06503264.1| DNA gyrase, B subunit, carboxyl terminus [Micrococcus luteus SK58]
 gi|289556362|gb|EFD49716.1| DNA gyrase, B subunit, carboxyl terminus [Micrococcus luteus SK58]
          Length = 701

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 237/699 (33%), Positives = 337/699 (48%), Gaps = 60/699 (8%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
            A+  Y+A  + +LEGLE VR RPGMYIG TD + L H   E+IDN++DE +AG+   IE
Sbjct: 2   PANTEYNARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALAGFGQSIE 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           ++L  +G + V DNGRGIPV+  P+    S +E++ T LHAGGKF   +Y  SGGLHGVG
Sbjct: 62  ITLHPDGSVEVEDNGRGIPVDVEPR-TGLSGVEVVFTKLHAGGKFGGGSYAASGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE---------------------KKE 197
            SVVNALS  L V V R   +    F RG P    +                       +
Sbjct: 121 ASVVNALSSRLDVQVLRGGKVHQMSFRRGEPGRFQDGSRPSPDAPFEPSTDASPLDVVGK 180

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK--Y 255
             R + GTR+ +  D +IF   A F A  L    +  AYL   ++      +        
Sbjct: 181 AKRGQTGTRVRYWADEQIFVKDATFSAEELQARARQTAYLIPGLRITVKDLRRRPGTPGA 240

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT----------------EKKGTHR 299
             P +E F + GG+  +++       +       G                   +     
Sbjct: 241 DGPVEEVFQYDGGISEFVEHLTPATPVTDVWRIQGSGTFKERVPVLGEDGRTSMQDVQRT 300

Query: 300 GTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIK---KYAELTQNKRAI 355
             V+ A+ W      +  S+ N I T +GGTH+SG   AL +  +   +         + 
Sbjct: 301 CEVDVALRWDVGYDTVFRSFVNIIATPKGGTHQSGFEAALLKAFRAQVEANARRLKAGSD 360

Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RTVENALRDPFDHYLVQN 411
            +  DD++     +L+V + EP+F GQTK  L +   +    + VE  L           
Sbjct: 361 KVEKDDVLAGMTAVLTVRLAEPQFEGQTKEILGTSAVRRIVSQVVEKQLTARLTSTARAQ 420

Query: 412 PIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
             +   LLE V+   + R+  R  +    RK A+    +P KLADC  N    +ELFIVE
Sbjct: 421 RQQVHTLLEKVVAEMKSRISARTHKENQRRKNALETSTMPAKLADCRSNDVASSELFIVE 480

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530
           GDSA G+AK AR+   QA+LP+RGKILNV  A    I  N +   L+Q +G      +  
Sbjct: 481 GDSALGTAKLARSSDFQALLPIRGKILNVQKASVSDILANAECAALIQVVGGGAGRSFDL 540

Query: 531 EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI---TQG-- 585
           +  RY KV++MTDADVDGAHI +LLLT F++ M  ++E   ++   PPL RI   T+G  
Sbjct: 541 DAARYGKVVLMTDADVDGAHIRTLLLTLFFRYMRPMVEAGRVYAAVPPLHRIEAVTRGVK 600

Query: 586 -TKSVYAHDEEHKQKILEEFKKHGKGKIE-ISRFKGLGEMLASQLKETAMDANKRTLLRV 643
             + +Y + E+     L   ++ G+   E I R+KGLGEM A QL ET MD   R L RV
Sbjct: 601 EREVIYTYSEQELHATLARLEREGRSYREPIQRYKGLGEMDADQLAETTMDPRHRMLRRV 660

Query: 644 EINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            I      ++  +   + LMG+    R  FI   A  +D
Sbjct: 661 NI----AEVEAAERVFDLLMGSAVAPRKDFIVSHADELD 695


>gi|329123547|ref|ZP_08252110.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Haemophilus aegyptius
           ATCC 11116]
 gi|327470363|gb|EGF15821.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Haemophilus aegyptius
           ATCC 11116]
          Length = 632

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 249/646 (38%), Positives = 355/646 (54%), Gaps = 22/646 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + NY A  I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE +AG+A  IEV 
Sbjct: 2   TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRPNHLAQEVIDNSVDEALAGFATKIEVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  + V DNGRG+PV+ HP     S +E+ILT LHAGGKF N  YE +GGLHGVGIS
Sbjct: 59  LHPDQSIEVTDNGRGMPVDIHP-TEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ + + V R   ++   F  G  +  LE       +             + D A
Sbjct: 118 VVNALSERVDIQVKRNGEVYKIAFENGSKVEELEIIGTCGRRTTGTTVHFKPNPKYFDSA 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L   ++  +              ++ + +  GL  YL   +   
Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDK-------VNNTQDIWLYEDGLSDYLIEAVNGF 230

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +  + F G+ +        V WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 231 ETLPEKPFVGEFKG---ANEAVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGL 287

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              I+++ E      R + + +DD+      ILS+ +++ +FAGQTK +L S  +   V 
Sbjct: 288 LDAIREFCEFRNLLPRGVKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVS 347

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             L+D F  +L QN  +A KL E  I  ++ RLR    ++V RK  +    LPGKLADC 
Sbjct: 348 GVLKDAFSLWLNQNVQDAEKLAEIAISSAQRRLR--AAKKVVRKKLVSGPALPGKLADCG 405

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR+R  QA+LPLRGKILN      +++  + +I D+ 
Sbjct: 406 SQDLEKTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDIA 465

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG    S      LRY KV I+ DAD DG HIA+LL   F +    L++  H+++  P
Sbjct: 466 VALGIDPDSNDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMP 524

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI    +  YA DE  K+ IL+   K+ KGK  + RFKGLGEM  SQL+ET MD N 
Sbjct: 525 PLYRIDLNKEVFYALDENEKEAILDRL-KNKKGKPNVQRFKGLGEMNPSQLRETTMDPNT 583

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++  +   +   DT + ++ L+  K +++R  ++Q +   +D
Sbjct: 584 RRLVQLTYDLGEDQGSDTLELMDMLLAKKRSEDRKNWLQAKGDQVD 629


>gi|322691363|ref|YP_004220933.1| DNA topoisomerase IV subunit B [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320456219|dbj|BAJ66841.1| DNA topoisomerase IV subunit B [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 758

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 239/756 (31%), Positives = 342/756 (45%), Gaps = 118/756 (15%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
             + Y A  + +LEGL+ VR RPGMYIG TD + L H   E+IDN++DE +AG+ N I V
Sbjct: 2   PKEEYGAKDLAVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNSVDEALAGFCNDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G + V DNGRGIPV+  PK    S +E++LT LHAG KF NS+Y   GGLHGVG 
Sbjct: 62  TLHTDGSVEVADNGRGIPVDKEPK-TGLSGVEVVLTKLHAGAKFGNSSYNAVGGLHGVGS 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPL------------------------SPLEK 195
           SVVNALS  L V V R        F +G P                         + LE 
Sbjct: 121 SVVNALSSRLDVEVDRDGKTHHMTFHQGHPGVYTDADPANPSPDSPFKRTRKNRPTELEI 180

Query: 196 KEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA-- 252
             KV     GTRI +  DP+IF   A F   +L+   +  ++L   +K     +      
Sbjct: 181 IGKVSPKTTGTRIRYWYDPEIFNKTAEFSYEQLIDRVRQTSFLVPGLKITIIDENVPETA 240

Query: 253 ---------------------------EKYGIPEKEEF---------------------- 263
                                      +    P +E+F                      
Sbjct: 241 ATDTVEATDDTTVEPAQDQAPALDVSSDDAESPAEEDFSLTAGDQVVDGAFGEQPAHPRV 300

Query: 264 ---YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR----------------GTVEW 304
                 GG+K ++    +   +       G+   K   +                  V+ 
Sbjct: 301 VEFLHTGGVKDFVDFLSKGEPISDIWRIQGEGTYKEETQAVGKGGELHAQEIERTCGVDI 360

Query: 305 AIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII----- 358
           A+ W       I S+ N + T  GGTH  G   A+T+ I+K  E    K  +++      
Sbjct: 361 ALRWVNGYDTTIMSFVNIVETPGGGTHVDGFMNAITKQIRKAVEDNARKLKVNMKDSAMK 420

Query: 359 --SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
              DD+    V +++  + EP+F GQTK  L +   +  V       F   +  +     
Sbjct: 421 VERDDIQAGLVAVVTARVAEPQFQGQTKDVLGTAQVKPIVTRLTDKQFGEMITGSKRGYK 480

Query: 417 KL----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           +     LE ++     R++ RK +E   RK A+    +P KL+DC        ELFIVEG
Sbjct: 481 EQSGRVLEKIVGEMHARIQSRKAKEVTRRKNALESASMPAKLSDCQPGNDDVAELFIVEG 540

Query: 472 DSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE 531
           DSA G+AK ARN   QA+LP+RGKILNV  A   ++ +N++   ++Q +G  +   +  E
Sbjct: 541 DSALGTAKAARNAGFQALLPIRGKILNVQKASITQMLSNKECAAIIQVVGAGSGQSFDIE 600

Query: 532 DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI----TQGTK 587
             RY K+I+MTDADVDGAHI  LLLT FY+ M  LIE  +++   PPL RI    +   +
Sbjct: 601 QSRYHKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGYVYAAVPPLHRIALTGSHKGE 660

Query: 588 SVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646
            +Y + ++     L +  KKH     +I R+KGLGEM A QL +T MD   R L R+ + 
Sbjct: 661 YIYTYSDDELAGKLADLDKKHIGYNDDIQRYKGLGEMDADQLADTTMDPRTRMLRRIRME 720

Query: 647 KDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
                     +  + LMG     R +FI + A   D
Sbjct: 721 D----AAQASEIFSLLMGDDVPPRKQFIVDNADDFD 752


>gi|317123186|ref|YP_004097298.1| DNA gyrase subunit B [Intrasporangium calvum DSM 43043]
 gi|315587274|gb|ADU46571.1| DNA gyrase subunit B [Intrasporangium calvum DSM 43043]
          Length = 704

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 253/709 (35%), Positives = 373/709 (52%), Gaps = 50/709 (7%)

Query: 20  SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79
           S+  + + +  + P   ++    +YDAS+I +LEGLE VR RPGMYIG T E+ LHHL  
Sbjct: 2   SDAAETTADSTNRPNVDHRPNGVDYDASAITVLEGLEAVRKRPGMYIGSTGERGLHHLVY 61

Query: 80  EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139
           E++DN++DE +AGYA+ I+++L  +G + V DNGRGIP + HP     S +E++LT LHA
Sbjct: 62  EIVDNSVDEALAGYADTIDITLLADGGVRVKDNGRGIPTDIHP-VEKMSAVELVLTQLHA 120

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKF    Y++SGGLHGVG SVVNALS  L V V ++  +    F+ G+P  PL + E+ 
Sbjct: 121 GGKFGGGGYKVSGGLHGVGSSVVNALSTTLKVAVRQKGYVHRMSFTMGVPDGPLRR-EEA 179

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------- 249
            ++ GT ITF P+ +IF     FD   L    Q  A+L+  +      ++          
Sbjct: 180 TDETGTTITFWPNAEIFDSV-DFDFETLRARLQQMAFLNKGLTLNLVDERVDQRAEASED 238

Query: 250 ------------------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
                                       K    +   + + GGL  Y+     ++     
Sbjct: 239 VDLDGVESDLATVVEDGDNGHDVPTSGRKTLTAKTATYRYDGGLVDYVNHLNSSKRSEPV 298

Query: 286 EIFTGKTEKKGTHRG-TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
                  E +   R  ++E A+ W       + +Y NTI T EGGTHE G R A+T+ I 
Sbjct: 299 HPEVIAIEVEDEARSLSLELAMQWTSAYSESVHTYANTINTHEGGTHEEGFRAAMTKLIN 358

Query: 344 KYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            +A       ++  ++  DD+      ++SV + +P+F GQTKTKL + + +  V+ A+ 
Sbjct: 359 DFARKQNLLKEKDENLTGDDVREGLTAVISVKLGDPQFEGQTKTKLGNSEVKGFVQRAMT 418

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNI 460
           D F H+L  +P E   ++   I+ +  R+  RK RE  R+  +     LPGKL DC    
Sbjct: 419 DEFGHWLETHPNEGKDIVRKSIQAAAARMAARKAREATRRKGLLESGGLPGKLKDCQSKD 478

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +E+FIVEGDSAGGSA QARN   QA+LP+RGKILNV  A  +KI  NQ++  L+ A 
Sbjct: 479 PSLSEVFIVEGDSAGGSATQARNPHIQAILPIRGKILNVEKARIDKILANQEVQALISAF 538

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           G      +     RY K+I+M DADVDG HI +LLLT  ++ M  LIE  +++L  PPLF
Sbjct: 539 GTGIGEDFDLAKARYHKIILMADADVDGMHIRTLLLTLLFRFMRPLIEAGYVYLAQPPLF 598

Query: 581 RITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDAN 636
           R+        +A+ +  +  + E  K +G    +   + R+KGLGEM   +L ET MD +
Sbjct: 599 RLRWSNAPHQFAYSDRERDGLTELGKANGWRLPKDNPVQRYKGLGEMNYQELGETTMDQS 658

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            RTLL+V ++          +    LMG   + R  FIQ+ A  +  + 
Sbjct: 659 TRTLLQVTLDD----AAKADEVFAVLMGEDVESRRTFIQKNARDVRFLD 703


>gi|46191321|ref|ZP_00206767.1| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), B subunit [Bifidobacterium longum DJO10A]
 gi|189439161|ref|YP_001954242.1| DNA topoisomerase plasmid partition protein B [Bifidobacterium
           longum DJO10A]
 gi|189427596|gb|ACD97744.1| DNA topoisomerase plasmid partition protein B [Bifidobacterium
           longum DJO10A]
          Length = 758

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 238/756 (31%), Positives = 341/756 (45%), Gaps = 118/756 (15%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
             + Y A  + +LEGL+ VR RPGMYIG TD + L H   E+IDN++DE +AG+ N I V
Sbjct: 2   PKEEYGAKDLAVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNSVDEALAGFCNDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G + V DNGRGIPV+  PK    S +E++LT LHAG KF NS+Y   GGLHGVG 
Sbjct: 62  TLHTDGSVEVADNGRGIPVDKEPK-TGLSGVEVVLTKLHAGAKFGNSSYNAVGGLHGVGS 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPL------------------------SPLEK 195
           SVVNALS  L V V R        F +G P                         + LE 
Sbjct: 121 SVVNALSSRLDVEVDRDGKTHHMTFHQGHPGVYTDADPANPSPDSPFKRTRKNRPTELEI 180

Query: 196 KEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA-- 252
             KV     GTRI +  DP+IF   A F   +L+   +  ++L   +K     +      
Sbjct: 181 IGKVSPKTTGTRIRYWYDPEIFNKTAEFSYEQLIDRVRQTSFLVPGLKITIIDENVPETA 240

Query: 253 ---------------------------EKYGIPEKEEF---------------------- 263
                                      +    P +E+F                      
Sbjct: 241 ATDTVEATDDATVEPAQDQAPALDVSSDDAESPAEEDFSLTAGDQVVDGAFGEQPAHPRV 300

Query: 264 ---YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR----------------GTVEW 304
                 GG+K ++    +   +       G+   K   +                  V+ 
Sbjct: 301 VEFLHTGGVKDFVDFLSKGEPISDIWRIQGEGTYKEETQAVGKGGELHAQEIERTCGVDI 360

Query: 305 AIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII----- 358
           A+ W       I S+ N + T  GGTH  G   A+T+ I+K  E    K  +++      
Sbjct: 361 ALRWVNGYDTTIMSFVNIVETPGGGTHVDGFMNAITKQIRKAVEDNARKLKVNMKDSAMK 420

Query: 359 --SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
              DD+    V +++  + EP+F GQTK  L +   +  V       F   +  +     
Sbjct: 421 VERDDIQAGLVAVVTARVAEPQFQGQTKDVLGTAQVKPIVTRLTDKQFGEMITGSKRGYK 480

Query: 417 KL----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           +     LE ++     R++ RK +E   RK A+    +P KL+DC        ELFIVEG
Sbjct: 481 EQSGRVLEKIVGEMHARIQSRKAKEVTRRKNALESASMPAKLSDCQPGNDDVAELFIVEG 540

Query: 472 DSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE 531
           DSA G+AK ARN   QA+LP+RGKILNV  A   ++ +N++   ++Q +G  +   +  E
Sbjct: 541 DSALGTAKAARNAGFQALLPIRGKILNVQKASITQMLSNKECAAIIQVVGAGSGQSFDIE 600

Query: 532 DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI----TQGTK 587
             RY K+I+MTDADVDGAHI  LLLT FY+ M  LIE  +++   PPL RI    +   +
Sbjct: 601 QSRYHKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGYVYAAVPPLHRIALTGSHKGE 660

Query: 588 SVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646
            +Y + ++     L +  K   G   +I R+KGLGEM A QL +T MD   R L R+ + 
Sbjct: 661 YIYTYSDDELAGKLADLDKKRIGYNDDIQRYKGLGEMDADQLADTTMDPRTRMLRRIRME 720

Query: 647 KDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
                     +  + LMG     R +FI + A   D
Sbjct: 721 D----AAQASEIFSLLMGDDVPPRKQFIVDNADDFD 752


>gi|319776382|ref|YP_004138870.1| DNA topoisomerase IV subunit B [Haemophilus influenzae F3047]
 gi|317450973|emb|CBY87202.1| DNA topoisomerase IV, subunit B [Haemophilus influenzae F3047]
          Length = 632

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 249/646 (38%), Positives = 355/646 (54%), Gaps = 22/646 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + NY A  I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE +AG+A  IEV 
Sbjct: 2   TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRPNHLAQEVIDNSVDEALAGFATKIEVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  + V DNGRG+PV+ HP     S +E+ILT LHAGGKF N  YE +GGLHGVGIS
Sbjct: 59  LHPDQSIEVTDNGRGMPVDIHP-TEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ + + V R   ++   F  G  +  LE       +             + D A
Sbjct: 118 VVNALSERVDIQVKRNGEVYKIAFENGSKVEELEIIGTCGRRTTGTTVHFKPNPKYFDSA 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L   ++  +              ++ + +  GL  YL   +   
Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDK-------VNNTQDIWLYEDGLSDYLIEAVNGF 230

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +  + F G+ +        V WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 231 ETLPEKPFVGEFKG---ANEAVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGL 287

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              I+++ E      R + + +DD+      ILS+ +++ +FAGQTK +L S  +   V 
Sbjct: 288 LDAIREFCEFRNLLPRGVKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVS 347

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             L+D F  +L QN  +A KL E  I  ++ RLR    ++V RK  +    LPGKLADC 
Sbjct: 348 GVLKDAFSLWLNQNVQDAEKLTEIAISSAQRRLR--AAKKVVRKKLVSGPALPGKLADCG 405

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR+R  QA+LPLRGKILN      +++  + +I D+ 
Sbjct: 406 SQDLEKTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDIA 465

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG    S      LRY KV I+ DAD DG HIA+LL   F +    L++  H+++  P
Sbjct: 466 VALGIDPDSNDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMP 524

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI    +  YA DE  K+ IL+   K+ KGK  + RFKGLGEM  SQL+ET MD N 
Sbjct: 525 PLYRIDLNKEVFYALDENEKEAILDRL-KNKKGKPNVQRFKGLGEMNPSQLRETTMDPNT 583

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++  +   +   DT + ++ L+  K +++R  ++Q +   +D
Sbjct: 584 RRLVQLTYDLGEDQGSDTLELMDMLLAKKRSEDRKNWLQAKGDQVD 629


>gi|254519462|ref|ZP_05131518.1| DNA topoisomerase IV subunit B [Clostridium sp. 7_2_43FAA]
 gi|226913211|gb|EEH98412.1| DNA topoisomerase IV subunit B [Clostridium sp. 7_2_43FAA]
          Length = 649

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 227/664 (34%), Positives = 341/664 (51%), Gaps = 36/664 (5%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           N+     YD + +  LE LEPVR+RPGMYIG T  K LHH   EV+DN++DE+  GY N 
Sbjct: 2   NEDLMKGYDVTDLTSLEKLEPVRIRPGMYIGSTGTKGLHHCVWEVLDNSIDEISNGYGNK 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
             + ++ +  +TV+DNGRGIP   HP    KS +E++ T LH GGKF+N  Y+ SGGLHG
Sbjct: 62  ATIVINKDKSITVIDNGRGIPTGIHP-IKKKSGVEMVFTELHTGGKFNNKNYKTSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKF-----------SRGIPLSPLEKKEKVRNKRGT 205
           VG +VVNALS  L V V +   I+ Q+F             G P++ LE   K +N  GT
Sbjct: 121 VGAAVVNALSSWLEVEVHQNGNIYKQRFGYAYDKELKRDMPGTPITKLEVVGKTKN-TGT 179

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           ++TF PD ++F     F    + +  Q  A+ +  +       ++  E         +Y 
Sbjct: 180 KVTFMPDKEVFSSV-DFKIDVIDERLQELAFQNKGIHLELIDLRKEEEFRKE-----YYS 233

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEK--KGTHRGTVEWAIAWCEENPEITSYCNTIL 323
             GL  +++   E+++ +       + E+                      I SY N I 
Sbjct: 234 ERGLLDFIEYLNESKTTLHQVPIYFEGERVVNNIQMFGELCIQFTDSSTENIASYVNNIP 293

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T E GTHE+G +  +TR  K+ A+      ++      DDL      I+ + I  P F G
Sbjct: 294 TTEAGTHETGFKTGMTRAFKEGAKKLGLVKEKDKDFEGDDLREGMTAIVRIKITNPMFEG 353

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL S +A   + +     F  ++  N   AT L+   ++ ++ R + +K  E   +
Sbjct: 354 QTKTKLGSTEAYTMMNDLAYTKFSEWIEDNKEVATMLINNALQAAQRREKIKKINEAEKK 413

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K       L GK+A C+       E  +VEGDSAGGSAKQAR+R  Q ++P +GKI+N  
Sbjct: 414 KVGKGAAPLAGKVAVCTLKDNTVNEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTE 473

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
               E +  ++++     ALG  T   Y+EEDL+Y+K+IIM+DADVDG HI +L +T+ Y
Sbjct: 474 KQKLENVLASEELKIFNTALGTGTLDNYKEEDLKYDKIIIMSDADVDGYHIRTLWMTYIY 533

Query: 561 QEMYDLIEQKHLFLISPPLFRITQ---GTKSV-YAHDEEHKQKILEEFKKHGKGKIEISR 616
           + M  LI   HL+L  PPL+++ +   G +   YA+ +E  + + +E  K       I R
Sbjct: 534 RYMRPLIANGHLYLAQPPLYKVYKTVKGKEVHKYAYSDEELENVKKEIGKGAL----IQR 589

Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           +KGLGEM   QL +T ++   RTLL+V I          +  ++ LMG   + R  ++ +
Sbjct: 590 YKGLGEMNPDQLWQTTLNPETRTLLQVTIED----AAKAEKMVSLLMGDIVEPRKTYMYK 645

Query: 677 RASF 680
              F
Sbjct: 646 YGEF 649


>gi|229844202|ref|ZP_04464343.1| DNA topoisomerase IV subunit B [Haemophilus influenzae 6P18H1]
 gi|229847154|ref|ZP_04467259.1| DNA topoisomerase IV subunit B [Haemophilus influenzae 7P49H1]
 gi|229809983|gb|EEP45704.1| DNA topoisomerase IV subunit B [Haemophilus influenzae 7P49H1]
 gi|229813196|gb|EEP48884.1| DNA topoisomerase IV subunit B [Haemophilus influenzae 6P18H1]
 gi|309973201|gb|ADO96402.1| DNA topoisomerase IV, subunit B [Haemophilus influenzae R2846]
          Length = 632

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 249/646 (38%), Positives = 355/646 (54%), Gaps = 22/646 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + NY A  I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE +AG+A  IEV 
Sbjct: 2   TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRPNHLAQEVIDNSVDEALAGFATKIEVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  + V DNGRG+PV+ HP     S +E+ILT LHAGGKF N  YE +GGLHGVGIS
Sbjct: 59  LHPDQSIKVTDNGRGMPVDIHP-TEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ + + V R   ++   F  G  +  LE       +             + D A
Sbjct: 118 VVNALSERVDIQVKRNGEVYKIAFENGSKVEELEVIGTCGRRTTGTTVHFKPNPKYFDNA 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L   ++  +              ++ + +  GL  YL   +   
Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDK-------VNNTQDIWLYEDGLSDYLIEAVNGF 230

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +  + F G+ +        V WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 231 ETLPEKPFVGEFKG---ANEAVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGL 287

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              I+++ E      R + + +DD+      ILS+ +++ +FAGQTK +L S  +   V 
Sbjct: 288 LDAIREFCEFRNLLPRGVKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVS 347

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             L+D F  +L QN  +A KL E  I  ++ RLR    ++V RK  +    LPGKLADC 
Sbjct: 348 GVLKDAFSLWLNQNVQDAEKLAEIAISSAQRRLR--AAKKVVRKKLVSGPALPGKLADCG 405

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR+R  QA+LPLRGKILN      +++  + +I D+ 
Sbjct: 406 SQDLEKTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDIA 465

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG    S      LRY KV I+ DAD DG HIA+LL   F +    L++  H+++  P
Sbjct: 466 VALGIDPDSNDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMP 524

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI    +  YA DE  K+ IL+   K+ KGK  + RFKGLGEM  SQL+ET MD N 
Sbjct: 525 PLYRIDLNKEVFYALDESEKEAILDRL-KNKKGKPNVQRFKGLGEMNPSQLRETTMDPNT 583

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++  +   +   DT + ++ L+  K +++R  ++Q +   +D
Sbjct: 584 RRLVQLTYDLGEDQGSDTLELMDMLLAKKRSEDRKNWLQAKGDQVD 629


>gi|254787783|ref|YP_003075212.1| DNA topoisomerase IV subunit B [Teredinibacter turnerae T7901]
 gi|237684233|gb|ACR11497.1| DNA topoisomerase IV, B subunit [Teredinibacter turnerae T7901]
          Length = 628

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 248/645 (38%), Positives = 363/645 (56%), Gaps = 26/645 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY A  I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AG+A  I+V+L 
Sbjct: 3   NYTAEDIEVLTGLDPVKKRPGMY---TDTNRPNHLAQEVIDNSVDEALAGFARKIQVTLH 59

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V D+GRG+PV+ HP+  NK  +E+IL+TLHAGGKF N  Y+ SGGLHGVG+SVV
Sbjct: 60  KDNSISVADDGRGMPVDLHPEQ-NKPGVEVILSTLHAGGKFSNKNYQFSGGLHGVGVSVV 118

Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS  L VT+ R   ++   F  G   +         +   GT + F PDPK F     
Sbjct: 119 NALSKILEVTIKRDGQVYRIGFQSGDKSVDLHVVDTCGKRNTGTSVRFLPDPKYFDSP-K 177

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F  +RL  + ++KA L   ++  ++ +          E + +Y+  GL+ YL    +   
Sbjct: 178 FSVSRLRHVLRAKAVLCPGLEVVFTDE-------QSGETDTWYYEDGLRDYLTAATQGWE 230

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALT 339
            + +E F G            +WA+ W  E  E    SY N I T +GGTH +GLR  L 
Sbjct: 231 TLPAEPFVGSFSA---ATEAADWAVQWLPEGGEITQESYVNLIPTAQGGTHVNGLRTGLM 287

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             +++Y E+     R + +  DD+  +   +LS  + +P+F+GQTK +L S +A   V  
Sbjct: 288 EAMREYCEIRNLIPRGVKLAPDDIWANCCFVLSSKLADPQFSGQTKERLSSREAAAFVSG 347

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
             +D F  +L QN  +  KL ++ I  +++R+R    +++ RK       LPGKLADCS 
Sbjct: 348 VAKDAFSLWLNQNTDDGDKLADYCISNAQKRVR--SSKKIARKKVTAGPALPGKLADCSS 405

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
           +     ELF+VEGDSAGGSAKQAR+R NQA++PLRGKILN     S ++  +Q++ D+  
Sbjct: 406 DDPAAGELFLVEGDSAGGSAKQARDRVNQAIMPLRGKILNTWEVDSAEVLASQEVHDISV 465

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG    S    E+LRY KV I+ DAD DG HIA+LL   F +    L++  H+F+  PP
Sbjct: 466 ALGIDPGSDNL-ENLRYHKVCILADADSDGLHIATLLCALFVRHFPALVKAGHVFVAMPP 524

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           LFRI  G    YA DE  KQ IL+    +  KGK+ + RFKGLGEM   QL+ET M  + 
Sbjct: 525 LFRIDIGQDVYYALDESEKQGILDRIAAEKKKGKVNVQRFKGLGEMNPMQLRETTMAVDT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           R L+++ I    ++ +        L   ++ +R ++++ +    +
Sbjct: 585 RRLVQLVIEPGDDTHQIMDML---LAKKRSGDRKEWLETKGDMAE 626


>gi|215918876|ref|NP_819117.2| DNA topoisomerase IV subunit B [Coxiella burnetii RSA 493]
 gi|206583761|gb|AAO89631.2| topoisomerase IV subunit B [Coxiella burnetii RSA 493]
          Length = 641

 Score =  534 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 248/652 (38%), Positives = 366/652 (56%), Gaps = 24/652 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              ++    Y A +I +L GLEPV+ RPGMY   TD    +HL  E IDN++DE IAG+A
Sbjct: 7   PTKKTTGKGYTAEAIEVLSGLEPVKRRPGMY---TDTSRPNHLAHEAIDNSVDEAIAGFA 63

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             +EV L  +G L V+D+GRG+P++ HP+    + +E+ILT LHAG KF   TYE SGGL
Sbjct: 64  QNVEVILYKDGSLEVIDDGRGMPIDVHPEH-KLTGVELILTRLHAGAKFSTKTYEYSGGL 122

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213
           HGVGISVVNALS +L V V +   I+   F+ G   S L       +++ GT I F PD 
Sbjct: 123 HGVGISVVNALSKKLTVQVKKDGKIYQMDFAHGEKTSKLRPVGSCNKSESGTSIHFWPD- 181

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
             + D   F  + L    ++KA L   +   +  +          ++ ++Y+  GLKTYL
Sbjct: 182 SHYFDSVKFGVSALKHTMRAKAVLCPGLTVHFIDE-------NTGQRLQWYYAEGLKTYL 234

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESG 333
              L +R  +  E + G    + T +     A    ++     SY N I T +GGTH +G
Sbjct: 235 ADSLRDRERLPEEPWVGSFSGE-TEKADWALAWLPEDDEGIRESYVNLIPTPQGGTHVNG 293

Query: 334 LRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           LR  L   ++++ E+ +   R + + S+D+      +LSV ++EP+F+GQTK +L S  +
Sbjct: 294 LRTGLLEAMREFCEIHKLLPRNLKLASEDIWEQCHYVLSVKMQEPQFSGQTKERLTSRQS 353

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
              V   ++D F  +L  N      L E VI  +++RLR    +++ RK       LPGK
Sbjct: 354 AVFVSGVVKDAFSLWLNHNVEIGKTLAELVIANAQKRLRM--SKKIERKKVTTGPALPGK 411

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC  +     ELF+VEGDSAGGSAKQAR+++ QA++PLRGKILN     +E++  +Q 
Sbjct: 412 LADCILSDPMQCELFLVEGDSAGGSAKQARDKNFQAIMPLRGKILNTWEVDTEQVLASQT 471

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           + D+  A+G    S    E LRY K+ I+ DAD DG HIA+LL   F +  Y L+   H+
Sbjct: 472 VHDIAIAIGVDPDSSNL-EGLRYGKICILADADSDGYHIATLLCALFMKHFYPLVVSGHV 530

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKET 631
           ++  PPL+RI  G    YA DEE K+ +L+  K    KG I I RFKGLGEM  SQL+ET
Sbjct: 531 YVAMPPLYRIDVGKDVFYALDEEEKEGVLDRIKAEKLKGAINIQRFKGLGEMNPSQLRET 590

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            M+ + R L+R+ +     S   T+  ++ L+  K A +R  +++++ +  +
Sbjct: 591 TMNPDTRHLVRLTV----KSKDKTEQLLDMLLAKKRAADRRDWLEKKGNLAE 638


>gi|161830424|ref|YP_001596021.1| DNA topoisomerase IV subunit B [Coxiella burnetii RSA 331]
 gi|161762291|gb|ABX77933.1| DNA topoisomerase IV, B subunit [Coxiella burnetii RSA 331]
          Length = 636

 Score =  534 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 248/652 (38%), Positives = 366/652 (56%), Gaps = 24/652 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              ++    Y A +I +L GLEPV+ RPGMY   TD    +HL  E IDN++DE IAG+A
Sbjct: 2   PTKKTTGKGYTAEAIEVLSGLEPVKRRPGMY---TDTSRPNHLAHEAIDNSVDEAIAGFA 58

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             +EV L  +G L V+D+GRG+P++ HP+    + +E+ILT LHAG KF   TYE SGGL
Sbjct: 59  QNVEVILYKDGSLEVIDDGRGMPIDVHPEH-KLTGVELILTRLHAGAKFSTKTYEYSGGL 117

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213
           HGVGISVVNALS +L V V +   I+   F+ G   S L       +++ GT I F PD 
Sbjct: 118 HGVGISVVNALSKKLTVQVKKDGKIYQMDFAHGEKTSKLRPVGSCNKSESGTSIHFWPD- 176

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
             + D   F  + L    ++KA L   +   +  +          ++ ++Y+  GLKTYL
Sbjct: 177 SHYFDSVKFGVSALKHTMRAKAVLCPGLTVHFIDE-------NTGQRLQWYYAEGLKTYL 229

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESG 333
              L +R  +  E + G    + T +     A    ++     SY N I T +GGTH +G
Sbjct: 230 ADSLRDRERLPEEPWVGSFSGE-TEKADWALAWLPEDDEGIRESYVNLIPTPQGGTHVNG 288

Query: 334 LRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           LR  L   ++++ E+ +   R + + S+D+      +LSV ++EP+F+GQTK +L S  +
Sbjct: 289 LRTGLLEAMREFCEIHKLLPRNLKLASEDIWEQCHYVLSVKMQEPQFSGQTKERLTSRQS 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
              V   ++D F  +L  N      L E VI  +++RLR    +++ RK       LPGK
Sbjct: 349 AVFVSGVVKDAFSLWLNHNVEIGKTLAELVIANAQKRLRM--SKKIERKKVTTGPALPGK 406

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC  +     ELF+VEGDSAGGSAKQAR+++ QA++PLRGKILN     +E++  +Q 
Sbjct: 407 LADCILSDPMQCELFLVEGDSAGGSAKQARDKNFQAIMPLRGKILNTWEVDTEQVLASQT 466

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           + D+  A+G    S    E LRY K+ I+ DAD DG HIA+LL   F +  Y L+   H+
Sbjct: 467 VHDIAIAIGVDPDSSNL-EGLRYGKICILADADSDGYHIATLLCALFMKHFYPLVVSGHV 525

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKET 631
           ++  PPL+RI  G    YA DEE K+ +L+  K    KG I I RFKGLGEM  SQL+ET
Sbjct: 526 YVAMPPLYRIDVGKDVFYALDEEEKEGVLDRIKAEKLKGAINIQRFKGLGEMNPSQLRET 585

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            M+ + R L+R+ +     S   T+  ++ L+  K A +R  +++++ +  +
Sbjct: 586 TMNPDTRHLVRLTV----KSKDKTEQLLDMLLAKKRAADRRDWLEKKGNLAE 633


>gi|238897993|ref|YP_002923673.1| DNA topoisomerase IV, subunit B [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229465751|gb|ACQ67525.1| DNA topoisomerase IV, subunit B [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 632

 Score =  534 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 248/650 (38%), Positives = 364/650 (56%), Gaps = 28/650 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           ++Y+ASSI +L GLEPVR RPGMY   T+    +HL  EVIDN++DE + G A  I+V++
Sbjct: 4   NHYNASSIEVLTGLEPVRRRPGMY---TETTRPNHLAQEVIDNSVDEALEGKARRIDVTV 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V DNGRG+PV+ HP+      +E+IL+ LHAGGKF N  Y  SGGLHGVG+SV
Sbjct: 61  YPDHSLKVSDNGRGMPVDLHPE-EQVPAIELILSRLHAGGKFSNKNYHFSGGLHGVGLSV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  L VTV R   I+   F +G     LE      +   GT + F PD   F    
Sbjct: 120 VNALSLRLEVTVKRGGQIYRIAFEKGNKTEDLEIIGTCAQRDTGTCVHFWPDASFFDTPH 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L   ++  +  +    E       + + +  GLK YL   L   
Sbjct: 180 -FSISRLSHLLKAKAVLCPSLQIVFKNELNNTE-------QRWCYEDGLKHYLIETLGAS 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE---ITSYCNTILTDEGGTHESGLRVA 337
             +    F G   ++      V+WA+ W  E        SY N I T +GGTH +GLR  
Sbjct: 232 VTLPKFPFLGSFSEET---KAVDWALCWLPEGGGELLTESYVNLIPTTQGGTHVNGLRQG 288

Query: 338 LTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + +  +D+ +    +LSV +++P+F+GQTK +  S      V
Sbjct: 289 LLDALREFCEFRQHLPRGVKLSGEDVWVGCAYLLSVKMQDPQFSGQTKERFSSRQCATFV 348

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN  EA +L E VI  +++RLR    ++V RK       LPGKLADC
Sbjct: 349 STVVKDAFSLWLNQNLSEAEQLAEMVINNAQQRLR--AAKKVVRKKLTSGPALPGKLADC 406

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      TELF+VEGDSAGGSAKQAR+R  QAV+PL+GKILN     S+++  ++++ D+
Sbjct: 407 SSQDVQQTELFLVEGDSAGGSAKQARDRQYQAVMPLKGKILNTWEVSSDEVLASKEVHDI 466

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S+     LRY K+ I+ DAD DG HIA+LL   F++    L++  H+++  
Sbjct: 467 SVAIGMDPESEDL-SALRYGKICILADADSDGLHIATLLCALFFRHFRSLVQAGHIYVAM 525

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA DEE K++IL +  K  +G   + RFKGLGEM   QL+ET +D N
Sbjct: 526 PPLYRIDLGKEVFYALDEEEKKRILGDL-KQKRGTPNVQRFKGLGEMNPVQLRETTLDPN 584

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID-DV 684
            R L+++ +  +          I+ L+  K +++R  ++QE+    + ++
Sbjct: 585 TRRLVQLRVQDNEMDHTVA--IIDMLLAKKRSEDRRHWLQEKGDIAEVNL 632


>gi|118444670|ref|YP_878399.1| DNA topoisomerase IV subunit B [Clostridium novyi NT]
 gi|118135126|gb|ABK62170.1| DNA topoisomerase IV subunit B [Clostridium novyi NT]
          Length = 652

 Score =  534 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 216/663 (32%), Positives = 342/663 (51%), Gaps = 34/663 (5%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +   ++YD + +  LE LEPVR+RPGMYIG T  K LHH   E++DN++DE+  GY N 
Sbjct: 5   QEKNKNSYDVTDLTSLEKLEPVRVRPGMYIGSTGTKGLHHCIWEILDNSIDEIANGYGNK 64

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           + + L+ +  +T++DNGRGIP   HP    KS +E++ T LH GGKF+N  Y+ SGGLHG
Sbjct: 65  VVLILNKDKSVTIMDNGRGIPTGIHP-VKKKSGVEMVFTELHTGGKFNNKNYKTSGGLHG 123

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV----------RNKRGTR 206
           VG +VVNALS+ L V V ++  I  Q+F      S  +K                + GT+
Sbjct: 124 VGAAVVNALSEWLEVEVYQKGHIHKQRFEYAEDKSLNKKMPGTPIFPLKIVGDTERTGTK 183

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           ITF+PD ++F     F    + +  Q  A+ +  +      +++            ++  
Sbjct: 184 ITFKPDKEVFSTT-EFKFEVIDERLQELAFQNKGITLVIKDERKEEVIEKE-----YHSE 237

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GL  ++    E++  I  +    + EK+  + +   E  + + + +   I SY N I T
Sbjct: 238 RGLLDFIDYLNESKIPIHKDPLLYEGEKEVNSIKVYCEVCMQFTDSSTENIASYVNNIPT 297

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            E GTHE+G +  +TR  K++A+      ++      DDL      IL V I  P F GQ
Sbjct: 298 TESGTHETGFKTGMTRAFKEWAKKLNIVKEKDKGFEGDDLREGMTAILRVKISNPIFEGQ 357

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TKTKL + +A   +          ++  N   AT+++   +  +  R + +K  +   +K
Sbjct: 358 TKTKLGNNEAYTVMNELAYIKIGEWIEDNKEIATQIINNAVSAAARREKIKKINDAEKKK 417

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
                  L GK++ C+       E  +VEGDSAGGSAKQAR+R  Q ++P +GKI+N   
Sbjct: 418 VGKGTAPLAGKVSICTLKRPEFCEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEK 477

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
              E +  ++++     A+G      Y E+DL+Y+K+II++DADVDG HI +L +T+ Y+
Sbjct: 478 QRLENVLASEELKLFNAAIGTGVLENYNEDDLKYDKIIILSDADVDGYHIRTLWITYIYR 537

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
            M  LI   HL++  PPL+++ + +K    S YA+ +E      +E  K       I R+
Sbjct: 538 YMRSLITNGHLYIALPPLYKVYKNSKKGEISRYAYSDEELASAKKEIGKGAL----IQRY 593

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           KGLGEM   QL +T ++   RTL ++ I          +  I+ LMG   + R  ++ + 
Sbjct: 594 KGLGEMNPDQLWDTTLNPETRTLQQITIED----AAKAEKMISLLMGDVVEPRRNYMYKY 649

Query: 678 ASF 680
           A F
Sbjct: 650 AEF 652


>gi|91794568|ref|YP_564219.1| DNA topoisomerase IV subunit B [Shewanella denitrificans OS217]
 gi|91716570|gb|ABE56496.1| DNA topoisomerase IV subunit B [Shewanella denitrificans OS217]
          Length = 628

 Score =  534 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 242/644 (37%), Positives = 349/644 (54%), Gaps = 22/644 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y + +I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AG+A  IEV 
Sbjct: 2   TNQYTSDAIEVLNGLDPVKRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHATKIEVV 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V D+GRG+PV+ H +    S +E+ILT LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHSDNSLEVTDDGRGMPVDIHQE-EGMSGVELILTKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + +TV R   ++   F  G  +  L       R   GTR+ F PDP  F   
Sbjct: 118 VVNALSKRVEITVRRDAQVYEMAFENGFKVEELTVTGTCGRRNTGTRVHFWPDPSYFDSA 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             +   +L+ + ++KA L   ++  ++            E  E+ +  GL  YLQ  ++ 
Sbjct: 178 N-YSLTKLIYLLRAKAVLCPGLRIKFTNK-------QNGETHEWCYESGLTDYLQEAVKG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
             L+  E F G  +                  N    SY N I T  GGTH +G R  L 
Sbjct: 230 SVLLPPEPFVGSFKGDLEA-ADWAVTWLPEGGNSIFESYVNLIPTPLGGTHVNGFRQGLL 288

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R + +  +D+      +LSV +++P+FAGQTK KL S      V  
Sbjct: 289 ESMREFCEFRNLVPRGLKLSPEDIWDKVSYVLSVKMQDPQFAGQTKEKLSSRQCAAFVSG 348

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            +RD F  +L  +   A +L E  I  +++RL+  K  +V RK       LPGKL DCS 
Sbjct: 349 LVRDSFSLWLNSHIELAEQLAELCISSAQKRLKAAK--KVARKKVTSGPALPGKLTDCSG 406

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 ELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     + ++  +Q++ D+  
Sbjct: 407 QDPMRGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASQEVHDISV 466

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+GC   S     +LRY K+ I+ DAD DG HIA+LL   F +    L+E+ H+++  PP
Sbjct: 467 AIGCDPDSDDI-SELRYGKICILADADSDGLHIATLLCALFLKHYRVLVEKGHVYIAMPP 525

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           LFRI  G    YA DE  K  IL+    +  KGK++++RFKGLGEM   QL+ET MD N 
Sbjct: 526 LFRIDIGKDVFYALDEGEKAGILDRITAEKKKGKVQVTRFKGLGEMNPLQLRETTMDPNT 585

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           R L+++ I++ L +          L   ++ +R  +++ +    
Sbjct: 586 RRLVQLTIDEPLQTDAMMDML---LAKKRSSDRKLWLESKGDLA 626


>gi|227549441|ref|ZP_03979490.1| DNA gyrase subunit B [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078518|gb|EEI16481.1| DNA gyrase subunit B [Corynebacterium lipophiloflavum DSM 44291]
          Length = 662

 Score =  534 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 233/673 (34%), Positives = 351/673 (52%), Gaps = 63/673 (9%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIG T  + LHHL  EV+DN++DE +AGYA+ ++V+L  +G + V+DNGRGIPVE HP 
Sbjct: 1   MYIGSTGARGLHHLVWEVVDNSVDEAMAGYADRVDVTLLADGGIEVIDNGRGIPVEMHP- 59

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
                T+++++T LHAGGKFD+ +Y +SGGLHGVGISVVNALS  +   + R    + Q 
Sbjct: 60  -SGAPTVQVVMTQLHAGGKFDSESYAVSGGLHGVGISVVNALSTRVEADIKRDGKHWYQN 118

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           F+  +P     ++       GT I F PD +IF     FD   + +  Q  A+L+  +  
Sbjct: 119 FTNAVPHEL--EQGGNARGTGTTIRFWPDAEIFETI-EFDYNTISRRLQEMAFLNKGLTI 175

Query: 244 CWSCDKEIAEK-------------------------------------------YGIPEK 260
               ++   E+                                               +K
Sbjct: 176 TLKDERVTDEELELEAIVEEGDTAALVDGDSFDDTVVEESTGDDAGAEVAPAVQKKREKK 235

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
             +++P GL  Y+    ++++ I   +   + +         E A+ W       + ++ 
Sbjct: 236 VTYHYPNGLIDYVDHLNKSKTPIHPSVIGFEAKGTDH---EAEVAMQWNNGFKESVHTFA 292

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREP 377
           NTI T EGGTHE G R ALT  + +YA   +   ++  ++  +D       I+SV + +P
Sbjct: 293 NTINTHEGGTHEEGFRAALTSIMNRYARDHKLLREKEPNLTGEDCREGLSAIVSVRVGDP 352

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F GQTKTKL + + +  V+ A+ +    +   NP EA  ++   +  S+ R   RK R+
Sbjct: 353 QFEGQTKTKLGNTEIKGFVQRAVNEHLSDWFDANPAEAKVIINKAVSSSQARQAARKARD 412

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
            V RK+A     LPGKLADC       +ELFIVEGDSAGGSAKQ R+   QA+LPLRGKI
Sbjct: 413 LVRRKSAGDMGGLPGKLADCRSKDPKASELFIVEGDSAGGSAKQGRDSMYQAILPLRGKI 472

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556
           LNV  A  +++  N ++  ++ ALG     ++    LRY K+++M DADVDG HIA+LLL
Sbjct: 473 LNVEKARMDRVLKNAEVQAIITALGTGIHDEFDISRLRYHKIVLMADADVDGQHIATLLL 532

Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIE-- 613
           T  ++ M +LIEQ H++L +PPL+++     +  YA  +  +   L E ++ G+      
Sbjct: 533 TLLFRFMPELIEQGHVYLANPPLYKLKWAKGEPGYAFSDRERDAQLAEGQEAGRKINTDD 592

Query: 614 -ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
            I R+KGLGEM  S+L ET +D   R L RV    D+   +   +  + LMG     R  
Sbjct: 593 GIQRYKGLGEMNPSELWETTLDPEHRILRRV----DVEDAQHADELFSILMGDDVAARRS 648

Query: 673 FIQERASFIDDVG 685
           FI  +A  +  + 
Sbjct: 649 FITRKAKDVRFLD 661


>gi|161833805|ref|YP_001598001.1| DNA gyrase B subunit [Candidatus Sulcia muelleri GWSS]
 gi|152206295|gb|ABS30605.1| DNA gyrase B subunit [Candidatus Sulcia muelleri GWSS]
          Length = 625

 Score =  534 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 248/632 (39%), Positives = 365/632 (57%), Gaps = 23/632 (3%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIG    K LHH+  EVI+N++DE ++G+ + I V++  +  +TV+DNGRGIPVE H K
Sbjct: 1   MYIGDIGIKGLHHMVYEVINNSIDESLSGFCDKIYVTIHKDNSITVLDNGRGIPVELHEK 60

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
               S LE+++T + AGGKFDN++Y+ SGGLHGVGIS VNALS +L   + R   I+ QK
Sbjct: 61  -EGISALELVMTKIGAGGKFDNNSYKFSGGLHGVGISCVNALSSKLIAKIFRNGKIYVQK 119

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           +SRG+P+S LE     +N+RGT+ITF+ D  IF     ++ + L    +  ++L+  +  
Sbjct: 120 YSRGVPISKLEIIGDSKNQRGTQITFKADKFIFKKI-SYNYSILKNRLRELSFLNKGLSI 178

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-------KKG 296
               +++   K G  +K  F+   G+K +L    +N+  I     + K+        KK 
Sbjct: 179 SLLDERK-IYKTGFFKKNHFFSKKGIKEFLMFIEKNKESIIENYKSKKSRIKDFFYLKKN 237

Query: 297 THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI 355
                +E  + +      +I SY N I T EGGTH SGL+ ALT+  KKY    +  + +
Sbjct: 238 KKNINLELVMRYNSSYKEKIFSYVNNINTSEGGTHISGLKKALTKTFKKYFSKNRRFKKL 297

Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415
            I     +     IL++ I  P+F GQTK KLV+ +    VE  ++  F+ +L +NP+  
Sbjct: 298 KISGGYFIEGLTAILTIKIINPKFEGQTKNKLVNYEIIGLVEKIVKKKFNSFLEKNPLYL 357

Query: 416 TKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            K+L  V   ++ R   ++ RE+ +    +K  LP KLADCS    +  EL++VEGDSAG
Sbjct: 358 KKILNKVFLSAKARQAYKRVRELIKTKTSKKNNLPIKLADCSSKNPNLCELYLVEGDSAG 417

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR- 534
           G+AKQ R R  QAVLPLRGKILNV  +   KI  N++I ++  ALG     +     L  
Sbjct: 418 GTAKQGRERKFQAVLPLRGKILNVEKSIKNKIFENEEIKNIFLALGVFFFKKKNIIKLNI 477

Query: 535 ----YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVY 590
               Y+K+IIMTDAD+DG+HI++L+LTFF++ M  LIE+ ++++ +PPLF I    K +Y
Sbjct: 478 KKIRYKKIIIMTDADIDGSHISTLVLTFFFRYMRILIEKGYIYIATPPLFLIKNYKKKIY 537

Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
           A + + ++KIL   KK     I I R+KGLGEM A QL ET M+   RTL +V I    +
Sbjct: 538 AWNYKEREKIL---KKSLLKGISIQRYKGLGEMNAEQLWETTMNPINRTLRKVTI----H 590

Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFID 682
           ++K      + LMG     R +FI+  A F  
Sbjct: 591 NIKIANKIFSMLMGENVLPRKQFIETNALFAK 622


>gi|209364253|ref|YP_001425349.2| DNA topoisomerase IV subunit B [Coxiella burnetii Dugway 5J108-111]
 gi|207082186|gb|ABS78278.2| topoisomerase IV subunit B [Coxiella burnetii Dugway 5J108-111]
          Length = 641

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 245/651 (37%), Positives = 364/651 (55%), Gaps = 22/651 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              ++    Y A +I +L GLEPV+ RPGMY   TD    +HL  E IDN++DE IAG+A
Sbjct: 7   PTKKTTGKGYTAEAIEVLSGLEPVKRRPGMY---TDTSRPNHLAHEAIDNSVDEAIAGFA 63

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             +EV L  +G L V+D+GRG+P++ HP+    + +E+ILT LHAG KF   TYE SGGL
Sbjct: 64  QNVEVILYKDGSLEVIDDGRGMPIDVHPEH-KLTGVELILTRLHAGAKFSTKTYEYSGGL 122

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213
           HGVGISVVNALS +L V V +   I+   F+ G   S L       +++ GT I F PD 
Sbjct: 123 HGVGISVVNALSKKLTVQVKKDGKIYQMDFAHGEKTSKLRPVGSCNKSESGTSIHFWPD- 181

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
             + D   F  + L    ++KA L   +   +  +          ++ ++Y+  GLKTYL
Sbjct: 182 SHYFDSVKFGVSALKHTMRAKAVLCPGLTVHFIDE-------NTGQRLQWYYAEGLKTYL 234

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESG 333
              L +R  +  E + G    + T +     A    ++     SY N I T +GGTH +G
Sbjct: 235 ADSLRDRERLPEEPWVGSFSGE-TEKADWALAWLPEDDEGIRESYVNLIPTPQGGTHVNG 293

Query: 334 LRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           LR  L   ++++ E+ +   R + + S+D+      +LSV ++EP+F+GQTK +L S  +
Sbjct: 294 LRTGLLEAMREFCEIHKLLPRNLKLASEDIWEQCHYVLSVKMQEPQFSGQTKERLTSRQS 353

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
              V   ++D F  +L  N      L E VI  +++RLR    +++ RK       LPGK
Sbjct: 354 AVFVSGVVKDAFSLWLNHNVEIGKTLAELVIANAQKRLRM--SKKIERKKVTTGPALPGK 411

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC  +     ELF+VEGDSAGGSAKQAR+++ QA++PLRGKILN     +E++  +Q 
Sbjct: 412 LADCILSDPMQCELFLVEGDSAGGSAKQARDKNFQAIMPLRGKILNTWEVDTEQVLASQA 471

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           + D+  A+G    S    E LRY K+ I+ DAD DG HIA+LL   F +  Y L+   H+
Sbjct: 472 VHDIAIAIGVDPDSSNL-EGLRYGKICILADADSDGYHIATLLCALFMKHFYPLVVSGHV 530

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKET 631
           ++  PPL+RI  G    YA DEE K+ +L+  K    KG I I RFKGLGEM  SQL+ET
Sbjct: 531 YVAMPPLYRIDVGKDVFYALDEEEKEGVLDRIKAEKLKGAINIQRFKGLGEMNPSQLRET 590

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            M+ + R L+R+ +     + +     ++K    +A +R  +++++ +  +
Sbjct: 591 TMNPDTRHLVRLTVKSKDKTEQLLDMLLDK---KRAADRRDWLEKKGNLAE 638


>gi|160871833|ref|ZP_02061965.1| DNA topoisomerase IV, B subunit [Rickettsiella grylli]
 gi|159120632|gb|EDP45970.1| DNA topoisomerase IV, B subunit [Rickettsiella grylli]
          Length = 630

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 245/645 (37%), Positives = 360/645 (55%), Gaps = 22/645 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +S+   Y A +I +L GL+PV+ RPGMY   +D    +HL  EVIDN++DE IAGYA  
Sbjct: 2   TKSSPKKYTAEAIEVLSGLDPVKRRPGMY---SDTSRPNHLAQEVIDNSVDEAIAGYARH 58

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+V L  +  L V D+GRG+PV+ HP+    + +E+ILT LHAGGKF++  Y  SGGLHG
Sbjct: 59  IDVVLHVDNSLEVSDDGRGMPVDVHPE-EKVTGVELILTRLHAGGKFNHKNYRFSGGLHG 117

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR-GTRITFRPDPKI 215
           VG+SVVNALS  L VT+ R   I+  +F +G   S L+K  K+     GT + F PD   
Sbjct: 118 VGVSVVNALSHRLQVTIRRDGFIYQMQFEQGNKKSNLKKIGKMETATSGTSLRFWPDK-R 176

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           + D   F  +RL    ++KA L   +   ++            +K+++++  G+ +YL+ 
Sbjct: 177 YFDNEKFSVSRLKHSLRAKAVLCPGLTVRFTDK-------QANKKDKWFYVDGVLSYLKD 229

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLR 335
            L     I  E F G    +                +  + SY N + T +GGTH +GLR
Sbjct: 230 SLRQVERIPKEPFHGHFATE-IEEVDWALCWLLESGDGLMESYVNLVPTVQGGTHVNGLR 288

Query: 336 VALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
             L   ++++ E      R + +  +D+      ILSV + EP+F+GQTK +L S  +  
Sbjct: 289 TGLLEAMREFCELRDLLPRGLKLAPEDVWEGCHYILSVKLLEPQFSGQTKERLTSRQSAL 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454
            V   ++D F  +L Q+  EA  L E +I  +++R R    + V RK  +    LPGKLA
Sbjct: 349 FVSGVIKDAFSLWLNQHVAEAENLAELMIAHAQKRQR---SKHVARKKVLGGAVLPGKLA 405

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC++   + TELF+VEGDSAGGSAKQAR+R+ QA++PLRGKILN     S  +  +Q+I 
Sbjct: 406 DCTETDLNRTELFLVEGDSAGGSAKQARDRAFQAIMPLRGKILNTWEVTSNHVLGSQEIH 465

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           D+  A+G    S+     LRY K+ I+ DAD DG HIA+LL   F +    LIE  H+++
Sbjct: 466 DIAVAIGIDPGSKDL-SGLRYGKICILADADSDGLHIATLLCGLFLKHFSALIEAGHIYI 524

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
             PPL+RI +G +  YA D+E KQ IL+      KGKI I RFKGLGEM   QL+ET M 
Sbjct: 525 AMPPLYRIDRGKEVFYALDDEEKQIILDRLIAENKGKISIQRFKGLGEMNPMQLRETTMA 584

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679
            + R L+++ I+    +          L   ++ +R  +++++  
Sbjct: 585 PDTRRLVQLIIDHPQKTFSLMDLL---LAKKRSGDRKIWLEKKGD 626


>gi|145632919|ref|ZP_01788652.1| DNA topoisomerase IV subunit B [Haemophilus influenzae 3655]
 gi|144986575|gb|EDJ93141.1| DNA topoisomerase IV subunit B [Haemophilus influenzae 3655]
          Length = 632

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 249/646 (38%), Positives = 356/646 (55%), Gaps = 22/646 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + NY A  I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE +AG+A+ IEV 
Sbjct: 2   TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRPNHLAQEVIDNSVDEALAGFASKIEVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  + V DNGRG+PV+ HP     S +E+ILT LHAGGKF N  YE +GGLHGVGIS
Sbjct: 59  LHPDQSIEVTDNGRGMPVDTHP-TEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ + + V R   ++   F  G  +  LE       +             + D A
Sbjct: 118 VVNALSERVDIQVKRNGEVYKIAFENGSKVEELEVIGTCGRRTTGTTVHFKPNPKYFDSA 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L   ++  +              ++ + +  GL  YL   +   
Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDK-------VNNTQDIWLYEDGLSDYLIEAVNGF 230

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +  + F G+ +        V WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 231 ETLPEKPFVGEFKG---TNEAVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGL 287

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              I+++ E      R + + +DD+      ILS+ +++ +FAGQTK +L S  +   V 
Sbjct: 288 LDAIREFCEFRNLLPRGVKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVS 347

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             L+D F  +L QN  +A KL E  I  ++ RLR    ++V RK  +    LPGKLADC 
Sbjct: 348 GVLKDAFSLWLNQNVQDAEKLAEIAISSAQRRLR--AAKKVVRKKLVSGPALPGKLADCG 405

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR+R  QA+LPLRGKILN      +++  + +I D+ 
Sbjct: 406 SQDLEKTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDIA 465

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG    S      LRY KV I+ DAD DG HIA+LL   F +    L++  H+++  P
Sbjct: 466 VALGIDPDSNDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMP 524

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI    +  YA DE  K+ IL+   K+ KGK  + RFKGLGEM  SQL+ET MD N 
Sbjct: 525 PLYRIDLNKEVFYALDESEKEAILDRL-KNKKGKPNVQRFKGLGEMNPSQLRETTMDPNT 583

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++  +   +   DT + ++ L+  K +++R  ++Q +   +D
Sbjct: 584 RRLVQLTYDLGEDQGSDTLELMDMLLAKKRSEDRKNWLQAKGDQVD 629


>gi|212213404|ref|YP_002304340.1| DNA topoisomerase IV subunit B [Coxiella burnetii CbuG_Q212]
 gi|212011814|gb|ACJ19195.1| topoisomerase IV subunit B [Coxiella burnetii CbuG_Q212]
          Length = 641

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 248/652 (38%), Positives = 366/652 (56%), Gaps = 24/652 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              ++    Y A +I +L GLEPV+ RPGMY   TD    +HL  E IDN++DE IAG+A
Sbjct: 7   PTKKTTGKGYTAEAIEVLSGLEPVKRRPGMY---TDTSRPNHLAHEAIDNSVDEAIAGFA 63

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             +EV L  +G L V+D+GRG+P++ HP+    + +E+ILT LHAG KF   TYE SGGL
Sbjct: 64  QNVEVILYKDGSLEVIDDGRGMPIDVHPEH-KLTGVELILTRLHAGAKFSTKTYEYSGGL 122

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213
           HGVGISVVNALS +L V V +   I+   F+ G   S L       +++ GT I F PD 
Sbjct: 123 HGVGISVVNALSKKLTVQVKKDGKIYQMDFAHGEKTSKLRPVGSCNKSESGTSIHFWPD- 181

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
             + D   F  + L    ++KA L   +   +  +          ++ ++Y+  GLKTYL
Sbjct: 182 SHYFDSVKFWVSALKHTMRAKAVLCPGLTVHFIDE-------NTGQRLQWYYAEGLKTYL 234

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESG 333
              L +R  +  E + G    + T +     A    ++     SY N I T +GGTH +G
Sbjct: 235 ADSLRDRERLPEEPWVGSFSGE-TEKADWALAWLPEDDEGIRESYVNLIPTPQGGTHVNG 293

Query: 334 LRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           LR  L   ++++ E+ +   R + + S+D+      +LSV ++EP+F+GQTK +L S  +
Sbjct: 294 LRTGLLEAMREFCEIHKLLPRNLKLASEDIWEQCHYVLSVKMQEPQFSGQTKERLTSRQS 353

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
              V   ++D F  +L  N      L E VI  +++RLR    +++ RK       LPGK
Sbjct: 354 AVFVSGVVKDAFSLWLNHNVEIGKTLAELVIANAQKRLRM--SKKIERKKVTTGPALPGK 411

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC  +     ELF+VEGDSAGGSAKQAR+++ QA++PLRGKILN     +E++  +Q 
Sbjct: 412 LADCILSDPMQCELFLVEGDSAGGSAKQARDKNFQAIMPLRGKILNTWEVDTEQVLASQT 471

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           + D+  A+G    S    E LRY K+ I+ DAD DG HIA+LL   F +  Y L+   H+
Sbjct: 472 VHDIAIAIGVDPDSSNL-EGLRYGKICILADADSDGYHIATLLCALFMKHFYPLVVSGHV 530

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKET 631
           ++  PPL+RI  G    YA DEE K+ +L+  K    KG I I RFKGLGEM  SQL+ET
Sbjct: 531 YVAMPPLYRIDVGKDVFYALDEEEKEGVLDRIKAEKLKGAINIQRFKGLGEMNPSQLRET 590

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            M+ + R L+R+ +     S   T+  ++ L+  K A +R  +++++ +  +
Sbjct: 591 TMNPDTRHLVRLTV----KSKDKTEQLLDMLLAKKRAADRRDWLEKKGNLAE 638


>gi|119946960|ref|YP_944640.1| DNA topoisomerase IV subunit B [Psychromonas ingrahamii 37]
 gi|119865564|gb|ABM05041.1| DNA topoisomerase IV subunit B [Psychromonas ingrahamii 37]
          Length = 629

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 237/644 (36%), Positives = 344/644 (53%), Gaps = 22/644 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           SD Y++ SI +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A  I+V 
Sbjct: 2   SDQYNSDSIEVLNGLDPVRHRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHAATIQVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+    S +E+I   LHAGGKF    YEISGGLHGVGIS
Sbjct: 59  LHEDQSLEVIDDGRGMPVDIHPE-ERISGVELIFCKLHAGGKFSGKNYEISGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V++ R   ++   F  G  +  L       +   GT + F PDP  F   
Sbjct: 118 VVNALSKRVDVSIRRDGQVYEIAFENGEKVEELHVTGVCGKRNTGTTVHFHPDPAYFDSA 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RLL + ++KA L   +   +                ++ +  GL  YL   + +
Sbjct: 178 R-FSVSRLLHLLKAKAVLCAGLTIKFKDK-------VNKNDYQWCYQDGLNDYLLEAVAD 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
             L+  + FTGK   K                     SY N I T +GGTH +G R  L 
Sbjct: 230 NELLPPQPFTGKFSAKSET-AEWSVVWLPDGGPSLSESYVNLIPTVQGGTHVNGFRQGLL 288

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ ++     R + +  +D+      ILSV I+EP+FAGQTK +L S      V  
Sbjct: 289 DAMREFCDIRNLLPRGLKLSPEDIWDRCAYILSVKIKEPQFAGQTKERLSSRQCVAFVSG 348

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L  +  EA  L ++ I  ++ R R+   +++ RK   +   LPGKL DCS 
Sbjct: 349 IVKDAFSLWLNAHVNEAELLADFCINNAQTRTRKT--KKIARKKITQGPALPGKLTDCST 406

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E+F+VEGDSAGGSAKQAR+R  QA++PLRGKI N     S+ I N+++I ++  
Sbjct: 407 QETMRGEIFLVEGDSAGGSAKQARDREFQAIMPLRGKIKNTWEDDSDIILNSEEIHNISV 466

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+G    S      LRY K+ I+ DAD DG HIA+L+   F +    +++  HLF+  PP
Sbjct: 467 AIGIDPASSDL-SGLRYGKICILADADSDGLHIATLICALFVRHFRAVVDAGHLFVAMPP 525

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANK 637
           L+RI  G +  YA DE  K  +L+  +   K GK+ + RFKGLGEM   QL+ET MD N 
Sbjct: 526 LYRIDIGKEVYYALDEAEKDGVLDRIEAEKKRGKVNVQRFKGLGEMNPLQLRETTMDPNT 585

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           R L+++        L+        L   +A +R  +++++    
Sbjct: 586 RRLVQLTTEGAEEMLEMMDML---LAKKRAGDRKVWLEDKGDMA 626


>gi|145634903|ref|ZP_01790610.1| DNA topoisomerase IV subunit B [Haemophilus influenzae PittAA]
 gi|145267769|gb|EDK07766.1| DNA topoisomerase IV subunit B [Haemophilus influenzae PittAA]
          Length = 632

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 248/646 (38%), Positives = 354/646 (54%), Gaps = 22/646 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + NY A  I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE +AG+A  IEV 
Sbjct: 2   TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRPNHLAQEVIDNSVDEALAGFATKIEVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  + V DNGRG+PV+ HP     S +E+ILT LHAGGKF N  YE +GGLHGVGIS
Sbjct: 59  LHPDQSIEVTDNGRGMPVDIHP-TEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ + + V R   ++   F  G  +  LE       +             + D A
Sbjct: 118 VVNALSERVDIQVKRNGEVYKIAFENGSKVEELEVIGTCGRRTTGTTVHFKPNPKYFDSA 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++K  L   ++  +              ++ + +  GL  YL   +   
Sbjct: 178 KFSVSRLRHLLRAKGVLCSGLEIKFIDK-------VNNTQDIWLYEDGLSDYLIEAVNGF 230

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +  + F G+ +        V WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 231 ETLPEKPFVGEFKG---TNEAVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGL 287

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              I+++ E      R + + +DD+      ILS+ +++ +FAGQTK +L S  +   V 
Sbjct: 288 LDAIREFCEFRNLLPRGVKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVS 347

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             L+D F  +L QN  +A KL E  I  ++ RLR    ++V RK  +    LPGKLADC 
Sbjct: 348 GVLKDAFSLWLNQNVQDAEKLAEIAISSAQRRLR--AAKKVVRKKLVSGPALPGKLADCG 405

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR+R  QA+LPLRGKILN      +++  + +I D+ 
Sbjct: 406 SQDLEKTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDIA 465

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG    S      LRY KV I+ DAD DG HIA+LL   F +    L++  H+++  P
Sbjct: 466 VALGIDPDSNDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMP 524

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI    +  YA DE  K+ IL+   K+ KGK  + RFKGLGEM  SQL+ET MD N 
Sbjct: 525 PLYRIDLNKEVFYALDENEKEAILDRL-KNKKGKPNVQRFKGLGEMNPSQLRETTMDPNT 583

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++  +   +   DT + ++ L+  K +++R  ++Q +   +D
Sbjct: 584 RRLVQLTYDLGEDQGSDTLELMDMLLAKKRSEDRKNWLQAKGDQVD 629


>gi|301170268|emb|CBW29873.1| DNA topoisomerase IV, subunit B [Haemophilus influenzae 10810]
          Length = 632

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 250/646 (38%), Positives = 355/646 (54%), Gaps = 22/646 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + NY A  I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE +AG+A  IEV 
Sbjct: 2   TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRPNHLAQEVIDNSVDEALAGFATKIEVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  + V DNGRG+PV+ HP     S +E+ILT LHAGGKF N  YE +GGLHGVGIS
Sbjct: 59  LHTDQSIEVTDNGRGMPVDIHP-TEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ + + V R   I+   F  G  +  LE       +             + D A
Sbjct: 118 VVNALSERVDIQVKRNGEIYKIAFENGSKVEELEIIGTCGRRTTGTTVHFKPNPKYFDSA 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L   ++  +              ++ + +  GL  YL   +   
Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDK-------VNNTQDIWLYEDGLSDYLIEAVNGF 230

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +  + F G+ +        V WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 231 ETLPEKPFVGEFKG---ANEAVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGL 287

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              I+++ E      R + + +DD+      ILS+ +++ +FAGQTK +L S  +   V 
Sbjct: 288 LDAIREFCEFRNLLPRGVKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVS 347

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             L+D F  +L QN  +A KL E  I  ++ RLR    ++V RK  +    LPGKLADC 
Sbjct: 348 GVLKDAFSLWLNQNVQDAEKLAEIAISSAQRRLR--AAKKVVRKKLVSGPALPGKLADCG 405

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR+R  QA+LPLRGKILN      +++  + +I D+ 
Sbjct: 406 SQDLEKTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDIA 465

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG    S      LRY KV I+ DAD DG HIA+LL   F +    L++  H+++  P
Sbjct: 466 VALGIDPDSNDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMP 524

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI    +  YA DE  K+ IL+   K+ KGK  + RFKGLGEM  SQL+ET MD N 
Sbjct: 525 PLYRIDLNKEVFYALDESEKEAILDRL-KNKKGKPNVQRFKGLGEMNPSQLRETTMDPNT 583

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++  +   +   DT + ++ L+  K +++R  ++Q +   +D
Sbjct: 584 RRLVQLTYDLGEDQGSDTLELMDMLLAKKRSEDRKNWLQAKGDQVD 629


>gi|318059563|ref|ZP_07978286.1| DNA topoisomerase IV subunit B [Streptomyces sp. SA3_actG]
 gi|318075444|ref|ZP_07982776.1| DNA topoisomerase IV subunit B [Streptomyces sp. SA3_actF]
          Length = 707

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 234/687 (34%), Positives = 344/687 (50%), Gaps = 52/687 (7%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY A  + +LEGLE VR RPGMYIG TD + L H   E+IDN++DE + GY + I+V+L
Sbjct: 21  SNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALGGYCDHIDVTL 80

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G + V DNGRGIPV+  PK    S +E+++T LHAGGKF   +Y  SGGLHGVG SV
Sbjct: 81  HEDGSVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGASV 139

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIP---------------LSPLEKKEKVRNKRGTR 206
           VNALS  L V V R  ++ +  F RG+P                   + K   + + GTR
Sbjct: 140 VNALSARLDVEVDRGGSVHTTSFRRGVPGQFKGAGPEGAFEPTTGLRKTKRIPKTRTGTR 199

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + +  D +IF   A      L +  +  A+L   +      +  + E     E E F + 
Sbjct: 200 VRYWADRQIFLKDAKLSLETLHQRARQTAFLVPGLTLVVHDEYGLGEGGSKGE-ESFRYD 258

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTVEWAIAWCE 310
           GG+  + +    ++++      +G+                   +      V+ A+ W  
Sbjct: 259 GGISEFCEYLARDKAVCDVLRLSGQGTFKETVPVLDEYGQMTPTEVVRDLGVDVALRWGT 318

Query: 311 ENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAV 367
                + S+ N I T +GGTH +G   A+TR +       +  R        DD +    
Sbjct: 319 GYETSVRSFVNIIATPKGGTHVAGFERAVTRTVNDVLRSAKLLRVAEDDVVKDDALEGLT 378

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER-- 425
            +++V + EP+F GQTK  L +  A R V N +      +L     +A      V+++  
Sbjct: 379 AVVTVRLAEPQFEGQTKEVLGTSAANRIVANVVAKELKAFLTSTKRDAKAQARAVLDKVV 438

Query: 426 ---SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
                    R+ +    RKTA+    LP KLADC  +    +ELFIVEGDSA G+AK AR
Sbjct: 439 AAARTRIAARQHKEAQRRKTALESSSLPAKLADCRSDDVDRSELFIVEGDSALGTAKLAR 498

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           N   QA+LP+RGKILNV  +    +  N +   ++Q +G  +   +  +  RY K+I++ 
Sbjct: 499 NSEFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVIGAGSGRTFDLDAARYGKIILLV 558

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-----TQGT-KSVYAHDEEH 596
           DADVDGAHI  LLLT F + M  ++E   +F   PPL RI      +G  K VY + +  
Sbjct: 559 DADVDGAHIRCLLLTLFQRYMRPMVEAGRVFAAVPPLHRIELSQPKKGQDKYVYTYSDRE 618

Query: 597 -KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
            ++ +L+  +K+ + K  I R+KGLGEM A QL ET MD   RTL R+ +N     L   
Sbjct: 619 LRETLLDFERKNVRYKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRISMND----LDSA 674

Query: 656 QDSINKLMGTKADERFKFIQERASFID 682
           +   + LMG +   R +FI   A+ +D
Sbjct: 675 EQVFDLLMGNEVAPRKEFITNSAATLD 701


>gi|302522323|ref|ZP_07274665.1| DNA gyrase, B subunit [Streptomyces sp. SPB78]
 gi|302431218|gb|EFL03034.1| DNA gyrase, B subunit [Streptomyces sp. SPB78]
          Length = 707

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 234/687 (34%), Positives = 344/687 (50%), Gaps = 52/687 (7%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY A  + +LEGLE VR RPGMYIG TD + L H   E+IDN++DE + GY + I+V+L
Sbjct: 21  SNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALGGYCDHIDVTL 80

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G + V DNGRGIPV+  PK    S +E+++T LHAGGKF   +Y  SGGLHGVG SV
Sbjct: 81  HEDGSVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGASV 139

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIP---------------LSPLEKKEKVRNKRGTR 206
           VNALS  L V V R  ++ +  F RG+P                   + K   + + GTR
Sbjct: 140 VNALSARLDVEVDRGGSVHTTSFRRGVPGQFKGAGPEGAFEPTTGLRKTKRIPKTRTGTR 199

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + +  D +IF   A      L +  +  A+L   +      +  + E     E E F + 
Sbjct: 200 VRYWADRQIFLKDAKLSLETLHQRARQTAFLVPGLTLVVRDEYGLGEGGSKGE-ESFRYD 258

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTVEWAIAWCE 310
           GG+  + +    ++++      +G+                   +      V+ A+ W  
Sbjct: 259 GGISEFCEYLARDKAVCDVLRLSGQGTFKETVPVLDEYGQMTPTEVVRDLGVDVALRWGT 318

Query: 311 ENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAV 367
                + S+ N I T +GGTH +G   A+TR +       +  R        DD +    
Sbjct: 319 GYETSVRSFVNIIATPKGGTHVAGFERAVTRTVNDVLRSAKLLRVAEDDVVKDDALEGLT 378

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER-- 425
            +++V + EP+F GQTK  L +  A R V N +      +L     +A      V+++  
Sbjct: 379 AVVTVRLAEPQFEGQTKEVLGTSAANRIVANVVAKELKAFLTSTKRDAKAQARAVLDKIV 438

Query: 426 ---SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
                    R+ +    RKTA+    LP KLADC  +    +ELFIVEGDSA G+AK AR
Sbjct: 439 AAARTRIAARQHKEAQRRKTALESSSLPAKLADCRSDDVDRSELFIVEGDSALGTAKLAR 498

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           N   QA+LP+RGKILNV  +    +  N +   ++Q +G  +   +  +  RY K+I++ 
Sbjct: 499 NSEFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVIGAGSGRTFDLDAARYGKIILLV 558

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-----TQGT-KSVYAHDEEH 596
           DADVDGAHI  LLLT F + M  ++E   +F   PPL RI      +G  K VY + +  
Sbjct: 559 DADVDGAHIRCLLLTLFQRYMRPMVEAGRVFAAVPPLHRIELSQPKKGQDKYVYTYSDRE 618

Query: 597 -KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
            ++ +L+  +K+ + K  I R+KGLGEM A QL ET MD   RTL R+ +N     L   
Sbjct: 619 LRETLLDFERKNVRYKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRISMND----LDSA 674

Query: 656 QDSINKLMGTKADERFKFIQERASFID 682
           +   + LMG +   R +FI   A+ +D
Sbjct: 675 EQVFDLLMGNEVAPRKEFITNSAATLD 701


>gi|68249955|ref|YP_249067.1| DNA topoisomerase IV subunit B [Haemophilus influenzae 86-028NP]
 gi|148826055|ref|YP_001290808.1| DNA topoisomerase IV subunit B [Haemophilus influenzae PittEE]
 gi|68058154|gb|AAX88407.1| topoisomerase IV subunit B [Haemophilus influenzae 86-028NP]
 gi|148716215|gb|ABQ98425.1| DNA topoisomerase IV subunit B [Haemophilus influenzae PittEE]
          Length = 632

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 250/646 (38%), Positives = 356/646 (55%), Gaps = 22/646 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + NY A  I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE +AG+A+ IEV 
Sbjct: 2   TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRPNHLAQEVIDNSVDEALAGFASKIEVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  + V DNGRG+PV+ HP     S +E+ILT LHAGGKF N  YE +GGLHGVGIS
Sbjct: 59  LHPDQSIEVTDNGRGMPVDTHP-TEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ + + V R   I+   F  G  +  LE       +             + D A
Sbjct: 118 VVNALSERVDIQVKRNGEIYKIAFENGSKVEELEIIGTCGRRTTGTTVHFKPNPKYFDSA 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L   ++  +              ++ + +  GL  YL   +   
Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDK-------VNNTQDIWLYEDGLSDYLIEAVNGF 230

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +  + F G+ +        V WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 231 ETLPEKPFVGEFKG---TNEAVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGL 287

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              I+++ E      R + + +DD+      ILS+ +++ +FAGQTK +L S  +   V 
Sbjct: 288 LDAIREFCEFRNLLPRGVKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVS 347

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             L+D F  +L QN  +A KL E  I  ++ RLR    ++V RK  +    LPGKLADC 
Sbjct: 348 GVLKDAFSLWLNQNVQDAEKLAEIAISSAQRRLR--AAKKVVRKKLVSGPALPGKLADCG 405

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR+R  QA+LPLRGKILN      +++  + +I D+ 
Sbjct: 406 SQDLEKTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDIA 465

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG    S      LRY KV I+ DAD DG HIA+LL   F +    L++  H+++  P
Sbjct: 466 VALGIDPDSNDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMP 524

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI    +  YA DE  K+ IL+   K+ KGK  + RFKGLGEM  SQL+ET MD N 
Sbjct: 525 PLYRIDLNKEVFYALDENEKEAILDRL-KNKKGKPNVQRFKGLGEMNPSQLRETTMDPNT 583

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++  +   +   DT + ++ L+  K +++R  ++Q +   +D
Sbjct: 584 RRLVQLTYDLGEDQGSDTLELMDMLLAKKRSEDRKNWLQAKGDQVD 629


>gi|21224166|ref|NP_629945.1| DNA topoisomerase IV subunit B [Streptomyces coelicolor A3(2)]
 gi|256784752|ref|ZP_05523183.1| DNA topoisomerase IV subunit B [Streptomyces lividans TK24]
 gi|289768639|ref|ZP_06528017.1| DNA topoisomerase IV subunit B [Streptomyces lividans TK24]
 gi|3036887|emb|CAA18520.1| putative DNA gyrase subunit B [Streptomyces coelicolor A3(2)]
 gi|289698838|gb|EFD66267.1| DNA topoisomerase IV subunit B [Streptomyces lividans TK24]
          Length = 707

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 235/706 (33%), Positives = 346/706 (49%), Gaps = 52/706 (7%)

Query: 23  LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82
             ++     +          NY A  + +LEGLE VR RPGMYIG TD + L H   E+I
Sbjct: 2   TAETSVPSTALLAGADRDGSNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEII 61

Query: 83  DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142
           DN++DE + GY + IEV L  +  + V DNGRGIPV+  PK    S +E+++T LHAGGK
Sbjct: 62  DNSVDEALGGYCDHIEVILHDDASVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHAGGK 120

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV--- 199
           F    Y  SGGLHGVG SVVNALS  L + V       +  F RG+P +  +        
Sbjct: 121 FGGGAYAASGGLHGVGASVVNALSARLDIEVDLGGHTHAISFRRGVPGTFAKAGPDAKFE 180

Query: 200 ------------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247
                       +++RGTR+ +  D +IF   A      L +  +  A+L   +      
Sbjct: 181 AGSGLRKVKKVPKSRRGTRVRYWADRQIFLKDAKLSLDNLHQRARQTAFLVPGLTIVVRD 240

Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-------------- 293
           +  + +     E E F F GG+  + +    +R +     F+G+                
Sbjct: 241 EFGLGDGGSKGE-ESFRFDGGISEFCEFLAGDRPVCDVLRFSGQGSFKETVPVLDEDGQM 299

Query: 294 --KKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
              + T    V+ A+ W         S+ N I T +GGTH +G   A+ + + +     +
Sbjct: 300 TPSEVTRDLGVDVALRWGTGYDTTVRSFVNIIATPKGGTHVAGFEQAVAKTMNEVLRTKK 359

Query: 351 NKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
             R        DD +     +++V + EP+F GQTK  L +  A+R V N +      +L
Sbjct: 360 MLRVAEDDIVKDDALEGLTAVVTVRLAEPQFEGQTKEVLGTSAARRIVNNVISRELKAFL 419

Query: 409 VQNPIEATKLLEWVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHG 463
                +A +    V+E+           R+ +    RKTA+    LP KLADC  +    
Sbjct: 420 TSTKRDAAQQARVVMEKAVAAARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDDVDR 479

Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523
           +ELFIVEGDSA G+AK ARN   QA+LP+RGKILNV  +    +  N +   ++Q +G  
Sbjct: 480 SELFIVEGDSALGTAKLARNSEFQALLPIRGKILNVQKSSVTDMLKNAECGAIIQVIGAG 539

Query: 524 TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI- 582
           +   +  +  RY K+I+MTDADVDG+HI +LLLT F++ M  ++E   +F   PPL RI 
Sbjct: 540 SGRTFDIDAARYGKIIMMTDADVDGSHIRTLLLTLFHRYMRPMVEAGRVFAAVPPLHRIE 599

Query: 583 ----TQGT-KSVYAHDEEH-KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
                +G  K VY + +   + K++E   K+ + K  I R+KGLGEM A QL ET MD  
Sbjct: 600 LVQPKKGQDKYVYTYSDRELRDKLMEFQSKNIRYKDSIQRYKGLGEMDADQLAETTMDPR 659

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           +RTL R+ +      L   +   + LMG     R +FI   A+ +D
Sbjct: 660 RRTLRRINLTD----LDSAEQVFDLLMGNDVAPRKEFISSSAATLD 701


>gi|70734049|ref|YP_257689.1| DNA topoisomerase IV subunit B [Pseudomonas fluorescens Pf-5]
 gi|68348348|gb|AAY95954.1| DNA topoisomerase IV, B subunit [Pseudomonas fluorescens Pf-5]
          Length = 634

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 240/653 (36%), Positives = 365/653 (55%), Gaps = 26/653 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
              ++ +Y+A +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A  
Sbjct: 2   ATPSASSYNADAIEVLSGLDPVRKRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHAKS 58

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+V L  +  L V D+GRG+PV+ HP+    S +E+ILT LHAGGKF N  Y+ SGGLHG
Sbjct: 59  IQVILHADHSLEVSDDGRGMPVDIHPE-EGVSGIELILTKLHAGGKFSNKNYQFSGGLHG 117

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKI 215
           VGISVVNALS+++ V V R    +   F+ G   + LE    V +   GT + F PDPK 
Sbjct: 118 VGISVVNALSNQVRVRVKRDGNEYQMTFADGYKATELEVVGTVGKRNTGTSVYFAPDPKY 177

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     F  +RL  + ++KA L   +   +             EK E+++  GL++YL  
Sbjct: 178 FDSP-KFSVSRLKHVLKAKAVLCPGLLVSFEDK-------SSGEKVEWHYEDGLRSYLVD 229

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESG 333
            +     + +E F G        +  V+WA+ W  E  +    SY N I T +GGTH +G
Sbjct: 230 AVSEFERLPAEPFCGSLAGN---KEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHVNG 286

Query: 334 LRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           LR  L   ++++ E      R + +  +D+      +LS+ +++ +F+GQTK +L S +A
Sbjct: 287 LRQGLLDAMREFCEFRNLLPRGLKLAPEDVWERIAFVLSMKMQDAQFSGQTKERLSSREA 346

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
              V   ++D F  +L  NP    +L E  I  +  RL+    ++V RK   +   LPGK
Sbjct: 347 AAFVSGVVKDAFSLWLNANPELGMQLAELAISNAGRRLK--ASKKVERKRITQGPALPGK 404

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC+      +ELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN       ++  +Q+
Sbjct: 405 LADCAGQDPMRSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGSEVLASQE 464

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           + ++  A+G    ++     LRY K+ I+ DAD DG HIA+LL   F Q    L++  H+
Sbjct: 465 VHNIAVAIGVDPGAEDM-SQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHV 523

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKET 631
           ++  PPL+RI  G +  YA DE  +  IL+    +  +GK +++RFKGLGEM   QL+ET
Sbjct: 524 YVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRET 583

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
            MD N R L+++ ++    + +        L   +A +R  +++ + +  + +
Sbjct: 584 TMDPNTRRLVQLTLDDVEATAEIMDML---LAKKRAGDRKSWLESKGNLAEVL 633


>gi|229825735|ref|ZP_04451804.1| hypothetical protein GCWU000182_01098 [Abiotrophia defectiva ATCC
           49176]
 gi|229790298|gb|EEP26412.1| hypothetical protein GCWU000182_01098 [Abiotrophia defectiva ATCC
           49176]
          Length = 677

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 244/694 (35%), Positives = 355/694 (51%), Gaps = 73/694 (10%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S+NYD S I ILEGLE VR RPGMYIG T  + LHHL  E++DN +DE +AG+ + I++ 
Sbjct: 2   SENYDGSQIVILEGLEAVRKRPGMYIGSTGTRGLHHLIWEILDNGIDEHLAGFCSQIDLI 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +G +T+ D GRG+PV+ HP      T  ++ T LHAGGKF    Y++SGGLHGVG S
Sbjct: 62  LRNDGGITIRDYGRGVPVDIHP-TKKIPTERVVYTVLHAGGKFSGGAYKVSGGLHGVGAS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRG-------IPLSPLEKKEKVRNKRGTRITFRPDP 213
           VVNALS ++ V + R   ++  ++  G       +       K   ++ +GT +TF PD 
Sbjct: 121 VVNALSTKMIVEIRRDGNVYVDEYENGGHPVTALVKGELPAVKTCKKSDKGTSVTFYPDD 180

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF     F A  + K  +  A+L+  +K  +  +    EK    +        G+K+Y+
Sbjct: 181 TIFET-IEFKADIIKKKLKETAFLNKGLKLNFKDEITGEEKTYEEK-------DGIKSYV 232

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +       +I  E+   + E        VE A  +      +I +YCN I   +GGT  +
Sbjct: 233 KYINRETEVIHDEVVYVEGESGDI---EVEVAFQYTNGFSEQINAYCNRINVVDGGTLVT 289

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G + ALTR + +YA        +  +    D+    V I+S+   +P+F GQTKTKL + 
Sbjct: 290 GFKTALTRVMNQYARELGYLKGKDDNFDGKDIRNGIVAIISIKHPDPQFEGQTKTKLGNT 349

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
           DA+  VE  +      Y  +N      +L+   +    R    K R      ++    + 
Sbjct: 350 DAKTAVEEVVSKEIVRYFDKNIEVLKSILDLAQKSYSARTASDKARN-AVLKSLNDFDVK 408

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
            KLA CS   A   E+++VEGDSAGG+ K ARNR  QAVLPLRGKILNV  A  EKI  N
Sbjct: 409 SKLASCSSKNAEECEIYLVEGDSAGGTVKTARNRKTQAVLPLRGKILNVEKAALEKILVN 468

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
            +I  ++   GC    ++    LRY+K+II+TDADVDGAHI++LLLTFFY+ M DLI++ 
Sbjct: 469 NEIKSMIATFGCGIGDEFDITKLRYDKIIILTDADVDGAHISTLLLTFFYRFMPDLIKEG 528

Query: 571 HLFLISPPLFRIT---QGTKSV-------------------------------------- 589
            ++   PPL+++     G K +                                      
Sbjct: 529 KIYRGLPPLYKVDYEESGAKVLEEKKLGEGQLDIFQLGVEDKPSEKQLKAKSGKKKKKSE 588

Query: 590 YAHDEEHKQKILEEFKKHGKGKI-EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648
           Y  ++      LE+FKK+   KI EI R+KGLGEM ASQL ET +D   R+L R++I+  
Sbjct: 589 YIFNDYE----LEKFKKNKNRKILEIQRYKGLGEMDASQLWETTLDPKTRSLARIDISDT 644

Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           +    +  +  + LM +    R +FI   A +  
Sbjct: 645 V----EADEVTSLLMSSVVPPRREFIMNEAKYAK 674


>gi|315604341|ref|ZP_07879407.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Actinomyces sp. oral
           taxon 180 str. F0310]
 gi|315314047|gb|EFU62098.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Actinomyces sp. oral
           taxon 180 str. F0310]
          Length = 706

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 233/702 (33%), Positives = 341/702 (48%), Gaps = 63/702 (8%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
             + + +Y+A  + +LEGLE VR RPGMYIG TD + L H   E+IDNA+DE + GY + 
Sbjct: 6   TPTDASDYNARHLSVLEGLEAVRKRPGMYIGSTDHRGLMHCLWEIIDNAVDEALEGYCDT 65

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+V L  +   +V DNGRGIPV+  P     + +E++ T LHAGGKF   +Y  SGGLHG
Sbjct: 66  IDVRLHPDHSASVADNGRGIPVDIVP-GQGLTGVEVVYTKLHAGGKFGGGSYAASGGLHG 124

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL--------------------EKK 196
           VG SVVNALS  L V V R        F RG P                        +  
Sbjct: 125 VGASVVNALSARLDVQVDRGGKTHEMCFRRGEPGEFDDSKQRTPNSPFRPFVDGSTLKTV 184

Query: 197 EKVRN-KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
            KV+  + GTR+ F  D +IF    GF    LL   +  A+L   +      ++   E  
Sbjct: 185 GKVKKSQTGTRVRFWADFQIFPATEGFSWENLLARARQTAFLVPGLTINCYDERGDEEIT 244

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-----------------KKGTH 298
                E F F GG+  +      + ++  +   TG                     +   
Sbjct: 245 -----ESFRFDGGVVDFANWLANDGAVTDTWHITGSGTYSETVQVLDPESGHLRATEVER 299

Query: 299 RGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK----- 352
              V+ A+ W         S+ N I T +GGTH +G   A+ + ++   +    K     
Sbjct: 300 TCDVDVALRWGIGYDTNLRSFVNIIATPKGGTHVAGFEQAVLKTLRAAIDKNARKLKVGA 359

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
           +      DD+      +++V   EP+F GQTK  L +   +  V   + D        + 
Sbjct: 360 KDGRPEKDDVQAGMTAVVTVRFPEPQFEGQTKETLGTPQIRTVVNRVVTDWLKAKFASSK 419

Query: 413 IEATKL----LEWVIERSEERLRRRKQREVNR-KTAIRKLRLPGKLADCSQNIAHGTELF 467
            +  +     +E V+   + R+  R  +E++R K A+    LP KLADC       TELF
Sbjct: 420 RDDKQQTSLLMEKVVGEMKARVSARIHKEISRKKNALETSSLPAKLADCRLEDVAETELF 479

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           IVEGDSA G+AK ARN   QA+ P+RGKILNV  A +  +  N +  +++Q +G  +   
Sbjct: 480 IVEGDSALGTAKAARNSHYQALFPIRGKILNVQKASTADMLANAECANIIQVIGAGSGRT 539

Query: 528 YREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI----- 582
           +     RY KVI+MTDADVDGAHI +LLLT F++ M  ++E   ++   PPL RI     
Sbjct: 540 FDLSQARYGKVILMTDADVDGAHIRTLLLTLFFRYMRPMVEAGRIYAAVPPLHRIEVAGK 599

Query: 583 -TQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANKRTL 640
             +  + VY + E+   + L   ++ G+  K  I R+KGLGEM A QL ET MD   R+L
Sbjct: 600 GRKKREYVYTYSEDELHRKLASLRRSGRTWKEPIQRYKGLGEMDADQLAETTMDRAHRSL 659

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            R+ +  +  +L+  +D    LMG+    R +FI E ++ +D
Sbjct: 660 RRITLADE-EALRQAEDVFELLMGSTVGPRREFIVEESAGLD 700


>gi|218281306|ref|ZP_03487794.1| hypothetical protein EUBIFOR_00359 [Eubacterium biforme DSM 3989]
 gi|218217491|gb|EEC91029.1| hypothetical protein EUBIFOR_00359 [Eubacterium biforme DSM 3989]
          Length = 641

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 242/650 (37%), Positives = 352/650 (54%), Gaps = 30/650 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
               YD SSI ILEGL+ VR RPGMYIG TD K LHHL  E++DNA+DE + GY N I +
Sbjct: 2   PKQQYDESSIVILEGLDAVRKRPGMYIGSTDSKGLHHLVWEIVDNAIDEALNGYGNEIAI 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN-STYEISGGLHGVG 158
           +L+ +G +TV D+GRG+PV  H      STL++I T LHAGGKF +   Y  +GGLHGVG
Sbjct: 62  TLEKDGSVTVEDHGRGMPVGKHK--SGVSTLQVIFTILHAGGKFTSHGGYTSAGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNAL     VTV     I+S  F  G       +K    N+ G+ +TF+PDP IF  
Sbjct: 120 ASVVNALCTWCKVTVHDGKDIWSMTFEDGGSKIGKLEKVGKTNRTGSTVTFKPDPTIFKT 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F  + + +  Q  A+L   +K      ++        ++  + +  GLK ++    +
Sbjct: 180 VH-FSYSTICERAQEDAFLLKGLKMIVRDKRK------EEKEVIYQYEDGLKAFIDEVNQ 232

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           + + +   I      +  +++  VE    + +E    I S+ N + T +GG+HE+G + A
Sbjct: 233 DHTPMHDSISF----RGESNQIVVEGCFQYTDEYQENIFSFTNMVRTRDGGSHETGAKQA 288

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
            T+   +YA       ++      +D+      ++++ I E   +F GQTK KL S +A+
Sbjct: 289 FTKVFNEYARKNGFLKEKDKGFDGNDVREGLTLVINLTIPEDYLQFEGQTKEKLGSPEAK 348

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LP 450
              E  + +   ++L +N   A  L+  +I+ ++ R   RK R   R    +      L 
Sbjct: 349 PATETVVSENLRYFLEENKEIANALVRKIIKAAQARNAARKARADIRNGKGKNRSERVLS 408

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLA      A   EL++VEGDSAGGSAKQ R+   QA+LPLRGK+LN   A  E I  N
Sbjct: 409 GKLASAQSKDARRKELYLVEGDSAGGSAKQGRDSKYQAILPLRGKVLNTEKASLEAIEKN 468

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           +++  ++ ALG    + +  ED  Y KVIIMTDAD DGAHI +LLLTFFY+ M +LI  +
Sbjct: 469 EELNTIIHALGAGVGANFTAEDSNYYKVIIMTDADDDGAHIQNLLLTFFYRYMRELITHE 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
            L++  PPL+RI +G K  Y +  E   +   E K        I+R+KGLGEM A+QL +
Sbjct: 529 MLYIALPPLYRIAKGGKEYYLYTNEELDEKKAELKN----GYTITRYKGLGEMNATQLWD 584

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           T M+   RTLL V I   +      +  + +LMG KA+ R  +I++   F
Sbjct: 585 TTMNPESRTLLCVTIENAMM----AEKRVTELMGDKAELRRNWIEDNVVF 630


>gi|302542033|ref|ZP_07294375.1| DNA gyrase, B subunit [Streptomyces hygroscopicus ATCC 53653]
 gi|302459651|gb|EFL22744.1| DNA gyrase, B subunit [Streptomyces himastatinicus ATCC 53653]
          Length = 707

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 239/687 (34%), Positives = 346/687 (50%), Gaps = 52/687 (7%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY A  + +LEGLE VR RPGMYIG TD + L H   E+IDN++DE + GY + IEV L
Sbjct: 21  SNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALGGYCDRIEVHL 80

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G + V DNGRGIPV+  PK    S +E+++T LHAGGKF    Y  SGGLHGVG SV
Sbjct: 81  HDDGSVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHAGGKFGGGAYAASGGLHGVGASV 139

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV---------------RNKRGTR 206
           VNALS  L V V       S  F RG+P    E                    + + GTR
Sbjct: 140 VNALSSRLDVEVDLHGKTHSISFRRGVPGIFTESGPDAPFDPSSGILKGKRVPKTRTGTR 199

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I +  D +IF   A      L    +  A+L   +      ++   +    P +EEF + 
Sbjct: 200 IRYWSDRQIFLKDAKLSLETLHARARQTAFLVPGLTLVVRDER-ALDGREGPVEEEFRYD 258

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTVEWAIAWCE 310
           GG+  + +   +++++      +G+                   + T    V+ A+ W  
Sbjct: 259 GGISEFCEYLAQDKAVCDVMRLSGQGTFKETVPVLDERGHMTPTEVTRDLGVDIALRWGT 318

Query: 311 ENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAV 367
                T S+ N I T +GGTH SG   ++T+ + +    ++  R        DD+M    
Sbjct: 319 GYDATTKSFVNIIATPKGGTHVSGFERSVTKTVNEVLRSSKLLRVAEDDVVKDDVMEGLT 378

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER-- 425
            +++V + EP+F GQTK  L +  A R V N +      +L     +A +    V+E+  
Sbjct: 379 AVVTVRLAEPQFEGQTKEVLGTSAASRIVANVVAKELKAFLTSAKRDAKQQARAVLEKIV 438

Query: 426 ---SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
                    R+ +    RKTA+    LP KLADC  +    +ELFIVEGDSA G+AK AR
Sbjct: 439 AAARTRIAARQHKEAQRRKTALESSSLPAKLADCRSDDVDRSELFIVEGDSALGTAKLAR 498

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           N   QA+LP+RGKILNV  +    +  N +   ++Q +G  +   +  +  RY KVI + 
Sbjct: 499 NSEFQALLPIRGKILNVQKSSVSDMLKNAECGSIIQVIGAGSGRTFDIDQARYGKVIFLA 558

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-----TQGT-KSVYAHDEEH 596
           DADVDGAHI  LLLT F + M  ++EQ  +F   PPL R+      +G  K +Y + +  
Sbjct: 559 DADVDGAHIRCLLLTLFQRYMRPMVEQGRVFSAVPPLHRVELVNPKRGQEKYIYTYSDNE 618

Query: 597 KQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
            ++ L + ++ G + K  I R+KGLGEM A QL ET MD   RTL R+ I+     L+  
Sbjct: 619 LRETLLDLERRGVRYKDGIQRYKGLGEMDADQLAETTMDPRHRTLRRINISD----LEAA 674

Query: 656 QDSINKLMGTKADERFKFIQERASFID 682
           + + + LMG +   R +FI   A+ +D
Sbjct: 675 EQAFHLLMGNEVAPRKEFITNSAATLD 701


>gi|320538929|ref|ZP_08038605.1| DNA topoisomerase IV, subunit B [Serratia symbiotica str. Tucson]
 gi|320031089|gb|EFW13092.1| DNA topoisomerase IV, subunit B [Serratia symbiotica str. Tucson]
          Length = 631

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 243/645 (37%), Positives = 359/645 (55%), Gaps = 26/645 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y+A +I +L GLEP+R RPGMY   TD    +HL  EVIDN++DE +A +A  IEV L 
Sbjct: 5   SYNADAIEVLSGLEPIRRRPGMY---TDTTRPNHLGQEVIDNSVDEALANHAKRIEVILH 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGISVV
Sbjct: 62  ADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221
           NALS  + V V R   ++   F  G  +  L       +   GT + F PD + F D   
Sbjct: 121 NALSKRVEVNVKRDGNVYGIAFENGDKVQDLTVTGTCGKRNTGTSVHFWPD-EQFFDSPR 179

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F  +RL  + ++KA L   V+  +       E       + + +  GL  YL   +    
Sbjct: 180 FSVSRLSHLLKAKAVLCPGVEIDFIDQVNNTE-------QRWCYQDGLTDYLMEAVNGLM 232

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALT 339
            + +  F             V+WA+ W  E  E    SY N I T +GGTH +GLR  L 
Sbjct: 233 TLPTAPFVRNFAGDTE---AVDWALLWLPEAGELLTESYVNLIPTMQGGTHVNGLRQGLL 289

Query: 340 RGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V  
Sbjct: 290 DAMREFCEFRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSG 349

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L QN   A +L E  I  ++ RLR    ++V RK       LPGKLADC+ 
Sbjct: 350 VVKDAFSLWLNQNVQAAEQLAELAISSAQRRLR--AAKKVVRKKLTSGPALPGKLADCTS 407

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+  
Sbjct: 408 QDLSMTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISV 467

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+G    ++     LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  PP
Sbjct: 468 AIGIDPDNEDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFSSLVKGGHVYVAMPP 526

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+RI  G +  Y  DEE K  +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N R
Sbjct: 527 LYRIDLGKEVFYVLDEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPLQLRETTLDPNTR 585

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            L+++ +N   +++  T   ++ L+  K +++R  ++Q++    +
Sbjct: 586 RLVQLTVN--ADNVVQTLAVMDMLLAKKRSEDRRNWLQDKGDMAE 628


>gi|7387745|sp|Q9ZAQ6|GYRB_MYCAT RecName: Full=DNA gyrase subunit B
 gi|4099106|gb|AAD09234.1| gyrase B [Mycoplasma arthritidis]
          Length = 638

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 248/620 (40%), Positives = 345/620 (55%), Gaps = 21/620 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + Q     Y A +I+ LEGLE VR RPGMYIG    + LHHL  E++DN++DE +AG+A
Sbjct: 1   MSKQEEISKYGAKNIQFLEGLEAVRKRPGMYIGSIGFRGLHHLIWEIVDNSVDEAMAGFA 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             IEV L  N  + V+DNGRG+PV+ HP    KS +E ILT L+AGGKFD++ Y++SGGL
Sbjct: 61  TNIEVKLHPNNEIEVIDNGRGMPVDIHP-TTKKSAVETILTVLYAGGKFDSTNYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKV-RNKRGTRITFRPD 212
           HGVG+SVVNALSD   V V R    + QK+ + G P+ PLE   +V +++ GTRI F PD
Sbjct: 120 HGVGVSVVNALSDSFEVWVKRGGKFYYQKYINGGHPVKPLEVIGEVNKDETGTRIKFHPD 179

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            +I      FD   ++   +  AYL+  +           E         F F GG+  Y
Sbjct: 180 YQIMDKV-AFDFGTIIDHAKQIAYLNKGLSIS-------CEDITKNTIRNFCFEGGIIDY 231

Query: 273 LQTKLENRSLISSEIFTGKT----EKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           +      + +I  +I   +     +        V  AI + E     I SY N I T EG
Sbjct: 232 VSELNRGKKVIIPDIIYAEGTFRDKTPNAQDVIVNVAIQYNETYTSNIVSYANNIQTGEG 291

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKT 385
           GTHE G   ALTR   KYAE  +  +  +     +D     V I+S+   +P F GQTK 
Sbjct: 292 GTHEQGFYDALTRIYNKYAEDNKLFKNNNEKISREDTKDGLVAIISIKHTDPIFEGQTKG 351

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT-AI 444
           KL + DA+      + +  + Y+ +NP  A  ++E  +     RL     RE +RK    
Sbjct: 352 KLENKDARIATNKIISEQLERYMAENPSHAKAIIEKCLLTQRSRLAANAAREASRKKEGS 411

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADCS   A   ELFIVEG+SAGGSAK  R+R+ QA+LPLRGKI+N      
Sbjct: 412 EFGNLPGKLADCSSKNAEVRELFIVEGNSAGGSAKMGRDRATQAILPLRGKIINAEKQDF 471

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
             + +N+++  ++ ALG     ++    L+Y K++IMTDADVDGAHIA+LLLTFFY+ M 
Sbjct: 472 TSVMSNKEVSSMIHALGTGITDEFNINKLKYHKIVIMTDADVDGAHIATLLLTFFYRYMR 531

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
            LIE   +++  PPL++I+    + YA+++  K++IL +        I I R+KGLGEM 
Sbjct: 532 PLIEYGFVYIAQPPLYKISTAKVTEYAYNDAQKEEILSKL--EDSKNISIQRYKGLGEMD 589

Query: 625 ASQLKETAMDANKRTLLRVE 644
             QL ET M+   R   + +
Sbjct: 590 PEQLWETTMNPATRKYCKFK 609


>gi|325578618|ref|ZP_08148718.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159854|gb|EGC71984.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 632

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 248/646 (38%), Positives = 356/646 (55%), Gaps = 22/646 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + NY A  I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE +AG+A  +EV 
Sbjct: 2   TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRPNHLAQEVIDNSVDEALAGFATKVEVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+DNGRG+PV+ HP     S +E+ILT LHAGGKF N  YE +GGLHGVGIS
Sbjct: 59  LHADQSLEVIDNGRGMPVDIHP-TEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ + + V R   ++   F  G+ +  LE       +             + D  
Sbjct: 118 VVNALSERVDIQVKRNGEVYKIAFENGVKVEELEVIGTCGRRTTGTTVHFKPNPKYFDSK 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L   ++  +       E       + + +  GL  YL   +   
Sbjct: 178 NFSVSRLRHLLRAKAVLCSGLEIKFVDKVNNTE-------DVWCYQDGLSDYLTEAVNGF 230

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +  + F G+ +        V WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 231 ETLPEKPFVGEFKGSTE---AVSWALLWLPEGGELIAESYVNLIPTVQGGTHVNGLRQGL 287

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              + +Y E      R + + +DD+      ILS+ +++ +FAGQTK +L S  +   V 
Sbjct: 288 LNAMTEYCEFRNKLPRGVKLTADDIWDRCAYILSLKMQDAQFAGQTKERLSSRQSAVFVA 347

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             L+D F  +L QN  +A +L E  I  ++ RL     ++V RK  +    LPGKLADC+
Sbjct: 348 GVLKDAFSLWLNQNVQDADRLAEMAISSAQRRL--NAAKKVVRKKLVSGPALPGKLADCA 405

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR+R  QA+LPLRGKILN     S+++  + +I D+ 
Sbjct: 406 SQNLEKTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVASDQVLGSTEIHDIA 465

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG    ++     LRY KV I+ DAD DG HIA+LL   F +    L++  H+++  P
Sbjct: 466 VALGIDPDNEDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMP 524

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G +  YA DE  K+ ILE  K   KG + + RFKGLGEM  SQL+ET MD N 
Sbjct: 525 PLYRIDLGKEVFYALDENEKEAILERLKGK-KGTLNVQRFKGLGEMDPSQLRETTMDPNT 583

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++  + + +    T + ++ L+  K A++R  ++Q     +D
Sbjct: 584 RRLVQLTYDLEEDQGAATLELMDMLLAKKRAEDRKNWLQTNGDQVD 629


>gi|242237464|ref|YP_002985645.1| DNA gyrase subunit B [Dickeya dadantii Ech703]
 gi|242129521|gb|ACS83823.1| DNA gyrase, B subunit [Dickeya dadantii Ech703]
          Length = 803

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 228/566 (40%), Positives = 346/566 (61%), Gaps = 17/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L + + R+  +  Q++  G P +PL          GT + F P  + F + 
Sbjct: 121 SVVNALSEKLELVIRREGKLHRQEYKHGEPQAPLAVVGDAS-TTGTTVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V      ++E        + + F++ GG+K ++     N
Sbjct: 180 VEFEYDILAKRLRELSFLNSGVSIRLRDERE------ENKADHFHYEGGIKAFVDYLNRN 233

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  ++F    EK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 234 KTPIHPQVFYFSAEKDGI---GVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y E      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNNYMEKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+ + D    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 351 ESLMNDRLVDYLMENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+F+
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVFI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  D+E   + 
Sbjct: 531 AQPPLYKVKKGKQEQYIKDDEAMDQY 556



 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ LE   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 718 FEQALEWLTKESRRGLAIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAM----AAD 773

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           +    LMG   + R  FI+E A    ++ 
Sbjct: 774 ELFTTLMGDAVEPRRAFIEENALKAANID 802


>gi|110835355|ref|YP_694214.1| DNA topoisomerase IV subunit B [Alcanivorax borkumensis SK2]
 gi|110648466|emb|CAL17942.1| DNA topoisomerase IV, B subunit [Alcanivorax borkumensis SK2]
          Length = 628

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 245/647 (37%), Positives = 369/647 (57%), Gaps = 26/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++NY + +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A  I+V+
Sbjct: 2   TNNYTSENIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHAKSIKVT 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +G + V D+GRG+PV+ HP    K  +E+IL+TLH+GGKF N+ Y+ SGGLHGVG+S
Sbjct: 59  LFKDGGVEVEDDGRGMPVDMHP-VQKKPGVEVILSTLHSGGKFSNNNYQFSGGLHGVGVS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS +L + V R   +   +F  G   S LE  + V +   GT + F PD + F   
Sbjct: 118 VVNALSTKLEILVKRDGQLHRMEFGDGEKRSDLEVIDTVGKRNTGTILRFWPDSQYFDSP 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
                +RL  + ++KA L   +           +     E + + F  GL  YL      
Sbjct: 178 -KISVSRLKHLLRAKAVLCPGLLVTL-------DNQQTGESDAWQFDDGLIEYLLESSTG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              + +E F G    +      V+WA+ W  E  E    +Y N I T +GGTH +GLR  
Sbjct: 230 WERVPAEPFNGAMSAETE---AVDWAVTWLPEGGELVQEAYVNLIPTAQGGTHVNGLRSG 286

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + +  +D+   A  +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLEAMREFCEFRNLLPRGVKLTPEDIWDRAAFVLSVKMQDPQFAGQTKERLSSRQTAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L Q+  EA KL +  I  +++RLR    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFSLWLNQHTDEAEKLADLCINNAQKRLR--AAKKVTRKKVTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           + +    +E+F+VEGDSAGGSAKQAR+R  QA++PLRGKI+N     S ++  +Q+I D+
Sbjct: 405 TSDDPSQSEIFLVEGDSAGGSAKQARDRVYQAIMPLRGKIMNTWEVDSNEVLGSQEIHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             ALG    S      LRY KV I+ DAD DG HIA+L+   F +    L++Q H+F+  
Sbjct: 465 AVALGIEPGSDDL-SSLRYGKVCILADADSDGLHIATLICALFLRHFPALVKQGHVFVAM 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDA 635
           PPL+RI  G +  YA D++ +  +L+  K   K GK+ ++RFKGLGEM   QL+ET M  
Sbjct: 524 PPLYRIDVGKEVYYALDKQERDGVLDRIKAEKKRGKVNVTRFKGLGEMNPLQLRETTMAR 583

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           + R L+R++++ D  + +     ++K    +A +R  +++E+ +  +
Sbjct: 584 DTRRLVRLDVSTDDGTHQLMDMLLSK---KRASDRKVWLEEKGNLAE 627


>gi|326329136|ref|ZP_08195464.1| DNA gyrase, B subunit [Nocardioidaceae bacterium Broad-1]
 gi|325953023|gb|EGD45035.1| DNA gyrase, B subunit [Nocardioidaceae bacterium Broad-1]
          Length = 687

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 245/681 (35%), Positives = 368/681 (54%), Gaps = 45/681 (6%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YDAS+I++LEGLE VR RPGMYIG T  + LHHL  E++DNA+DE +AGY + I+V+L  
Sbjct: 12  YDASAIQVLEGLEAVRKRPGMYIGSTGARGLHHLIWEIVDNAVDEALAGYCDTIKVTLRE 71

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G+++V DNGRGIP +            + LT LHAGGKF    Y++SGGLHGVG SVVN
Sbjct: 72  DGWVSVADNGRGIPTDT-AAGQEIPAATLALTVLHAGGKFGGGGYKVSGGLHGVGSSVVN 130

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDKAG 221
           ALS  LH+ +  +  ++ Q+F+RG+P   L +  ++    + GT I++    +IF     
Sbjct: 131 ALSTNLHMEIKNRGRLWEQEFTRGVPDYDLREVRELEEGERTGTTISWNASAEIFES-TD 189

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDK--------------------EIAEKYGIPEKE 261
           ++   +    +  A+L+  ++     ++                       E +G    E
Sbjct: 190 YNLETISSHFRETAFLNKGLRIELRDERPQASAIAEAVEDGTIESDTDSADELHGTGNGE 249

Query: 262 E-----FYFPGGLKTYLQTKLENRSLISSEIFTG-KTEKKGTHRGTVEWAIAWC--EENP 313
                 FY+  GL  Y+    + ++ +SS I    +T+ K  +  +VE A+ W     N 
Sbjct: 250 RVLEQSFYYERGLADYVDHLNKRKTPVSSIIAFEAETDDKAPNPMSVEIAMQWQASSYNE 309

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
            + ++ NT+ T  GGTHE G R ALT  I ++ E      K+   +  DD+      I+S
Sbjct: 310 SVHTFANTVNTPGGGTHEEGFRAALTTLINRWGEEWGLIKKKEDRLTGDDIREGLTAIIS 369

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V I EP+F GQTK KL + + +  V+ A+ D    +L QNP E  +++   +  +  R+ 
Sbjct: 370 VKISEPQFEGQTKDKLGNTEVKGFVQGAVNDQLGAWLEQNPAEGKEVIRKSMAAASARIA 429

Query: 432 RRKQRE--VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
            RK R+   NRK       LPGKLADC        E+FIVEGDSAGGSAK  R+   QA+
Sbjct: 430 ARKARDLARNRKGIGGGGGLPGKLADCQSTNPEECEIFIVEGDSAGGSAKSGRDPRIQAI 489

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549
           LP+RGKILNV  A  +K+  NQ++  ++ ALG      +    LRY K+++M DADVDG 
Sbjct: 490 LPIRGKILNVEKARIDKVLANQEVQSIISALGTGVHDDFDINRLRYHKIVMMADADVDGH 549

Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT--KSVYAHDEEHKQKILEEFKKH 607
           HI +LLLT  ++ M  LIEQ +++L  PPL+R+      +  + + +  +  ++ +  + 
Sbjct: 550 HINTLLLTLLFRFMKPLIEQGYVYLAQPPLYRLRWNKPAEHEFVYSDAERDALMRDGLEQ 609

Query: 608 GKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMG 664
           GK   +   + R+KGLGEM A +L ET MD ++R LL+V +           +  + LMG
Sbjct: 610 GKKLPKENPVQRYKGLGEMNADELWETTMDPSQRLLLQVTLED----AAHADEIFSILMG 665

Query: 665 TKADERFKFIQERASFIDDVG 685
               ER  FIQ  A  +  + 
Sbjct: 666 EDVAERRSFIQRNAKDVRFLD 686


>gi|104783895|ref|YP_610393.1| DNA topoisomerase IV subunit B [Pseudomonas entomophila L48]
 gi|95112882|emb|CAK17610.1| topoisomerase IV subunit B [Pseudomonas entomophila L48]
          Length = 634

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 249/655 (38%), Positives = 365/655 (55%), Gaps = 27/655 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            AN SAS  Y+A +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A
Sbjct: 1   MANPSASA-YNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHA 56

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             ++V L  +  L V D+GRG+PV+ HP+    S +E+ILT LHAGGKF N  Y+ SGGL
Sbjct: 57  RSVQVILHADHSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213
           HGVGISVVNALS ++ V V R    +   F+ G   S LE    V +   GT + F PDP
Sbjct: 116 HGVGISVVNALSSQVRVRVKRDGNEYQMTFADGFKASELEVVGSVGKRNTGTSVYFTPDP 175

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     F  +RL  + ++KA L   +   +          G  EK E+++  GL++YL
Sbjct: 176 KYFDSP-KFSISRLKHVLKAKAVLCPGLSISFEDK-------GTGEKVEWHYEDGLRSYL 227

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHE 331
              +     +  E F G        +  V+WA+ W  E  +    SY N I T +GGTH 
Sbjct: 228 VDSVSEFPRLPDEPFCGSLAGN---KEAVDWALLWLPEGGDSIQESYVNLIPTAQGGTHV 284

Query: 332 SGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           +GLR  L   ++++ E      R + +  +D+      +LS+ ++EP+F+GQTK +L S 
Sbjct: 285 NGLRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERISFVLSMKMQEPQFSGQTKERLSSR 344

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
           +A   V   ++D F  +L  +P    +L E  I  +  RL+    ++V RK   +   LP
Sbjct: 345 EAAAFVSGVVKDAFSLWLNAHPELGMQLAELAISNAGRRLK--ASKKVERKRVTQGPALP 402

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC+       ELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN       ++  +
Sbjct: 403 GKLADCAGQDPMRAELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLAS 462

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           Q++ ++  A+G    +      LRY KV I+ DAD DG HIA+LL   F Q    L+E  
Sbjct: 463 QEVHNIAVAIGVDPGATDL-SQLRYGKVCILADADSDGLHIATLLCALFVQHFRPLVEAG 521

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLK 629
           H+++  PPL+RI  G +  YA DE  +  IL+    +  +GK +++RFKGLGEM   QL+
Sbjct: 522 HVYVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLR 581

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           ET MD N R L+++ ++    + +        L   +A +R  +++ + +  + +
Sbjct: 582 ETTMDPNTRRLVQLTLDDVQGTTEIMDML---LAKKRAGDRKNWLETKGNLAEVL 633


>gi|301156477|emb|CBW15948.1| DNA topoisomerase IV, subunit B [Haemophilus parainfluenzae T3T1]
          Length = 632

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 248/646 (38%), Positives = 355/646 (54%), Gaps = 22/646 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + NY A  I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE +AG+A  +EV 
Sbjct: 2   TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRPNHLAQEVIDNSVDEALAGFATKVEVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+DNGRG+PV+ HP     S +E+ILT LHAGGKF N  YE +GGLHGVGIS
Sbjct: 59  LHADQSLEVIDNGRGMPVDIHP-TEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ + + V R   ++   F  G+ +  LE       +             + D  
Sbjct: 118 VVNALSERVDIQVKRNGEVYKIAFENGVKVEELEVIGTCGRRTTGTTVHFKPNPKYFDSK 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L   ++  +       E       + + +  GL  YL   +   
Sbjct: 178 NFSVSRLRHLLRAKAVLCSGLEIKFVDKVNNTE-------DVWCYQDGLSDYLTEAVNGF 230

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +  + F G+ +        V WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 231 ETLPEKPFVGEFKGSTE---AVSWALLWLPEGGELIAESYVNLIPTVQGGTHVNGLRQGL 287

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              + +Y E      R + + +DD+      ILS+ +++ +FAGQTK +L S  +   V 
Sbjct: 288 LNAMTEYCEFRNKLPRGVKLTADDIWDRCAYILSLKMQDAQFAGQTKERLSSRQSAVFVA 347

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             L+D F  +L QN  +A +L E  I  ++ RL     ++V RK  +    LPGKLADC+
Sbjct: 348 GVLKDAFSLWLNQNVQDADRLAEMAISSAQRRL--NAAKKVVRKKLVSGPALPGKLADCA 405

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR+R  QA+LPLRGKILN     S+++  + +I D+ 
Sbjct: 406 SQNLEKTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVASDQVLGSTEIHDIA 465

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG    ++     LRY KV I+ DAD DG HIA+LL   F +    L++  H+++  P
Sbjct: 466 VALGIDPDNEDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMP 524

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G +  YA DE  K+ ILE  K   KG + + RFKGLGEM  SQL+ET MD N 
Sbjct: 525 PLYRIDLGKEVFYALDESEKEAILERLKGK-KGTLNVQRFKGLGEMDPSQLRETTMDPNT 583

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++      +   +T + ++ L+  K A++R  ++Q     +D
Sbjct: 584 RRLVQLTYELGEDQGAETLELMDMLLAKKRAEDRKNWLQTNGDQVD 629


>gi|77456727|ref|YP_346232.1| DNA topoisomerase IV subunit B [Pseudomonas fluorescens Pf0-1]
 gi|77380730|gb|ABA72243.1| topoisomerase IV subunit B [Pseudomonas fluorescens Pf0-1]
          Length = 635

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 244/654 (37%), Positives = 367/654 (56%), Gaps = 27/654 (4%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
              ++ +Y+A +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A  
Sbjct: 2   ATPSASSYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHAKS 58

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+V L  +  L V D+GRG+PV+ HP+    S +E+ILT LHAGGKF N  Y+ SGGLHG
Sbjct: 59  IQVILHADHSLEVCDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGLHG 117

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKI 215
           VGISVVNALS ++ V V R    +   F+ G   + L+    V +   GT + F PDPK 
Sbjct: 118 VGISVVNALSTQVRVRVKRDGNEYEMTFADGFKATDLQVIGTVGKRNTGTSVYFAPDPKY 177

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     F  +RL  + ++KA L   +   +          G  EK E+++  GL++YL  
Sbjct: 178 FDSP-KFSISRLKHVLKAKAVLCPGLLISFEDK-------GTGEKVEWHYEDGLRSYLVD 229

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESG 333
            +     +    F G        +  VEWA+ W  E       SY N I T++GGTH +G
Sbjct: 230 AVSEFERLPDAPFCGNL---AGTKEAVEWALLWLPEGGTSVTESYVNLIPTEQGGTHVNG 286

Query: 334 LRVALTRGIKKYAEL-TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           LR  L   ++++ E  +   R + +  +D+      +LS+ ++EP+F+GQTK +L S +A
Sbjct: 287 LRQGLLDAMREFCEFRSLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREA 346

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
              V   ++D F  +L  NP     L E  I  +  RL+    ++V RK   +   LPGK
Sbjct: 347 AAFVSGVVKDAFSLWLNANPETGLALAELAISNAGRRLK--ASKKVERKRITQGPALPGK 404

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC+      +ELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN       ++  +Q+
Sbjct: 405 LADCAGQDPMRSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGSEVLASQE 464

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           + ++  A+G    ++     LRY K+ I+ DAD DG HIA+LL   F Q    L++  H+
Sbjct: 465 VHNIAVAIGVDPGAEDM-SQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHV 523

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKET 631
           ++  PPL+RI  G +  YA DE  +  IL+    +  +GK +++RFKGLGEM   QL+ET
Sbjct: 524 YVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRET 583

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDV 684
            MD N R L+++ +        +T + ++ L+  K A +R  +++ + +  + +
Sbjct: 584 TMDPNTRRLVQLTL---GGDFAETSEMMDMLLAKKRAGDRKTWLESKGNLAEVL 634


>gi|254427031|ref|ZP_05040738.1| DNA topoisomerase IV, B subunit [Alcanivorax sp. DG881]
 gi|196193200|gb|EDX88159.1| DNA topoisomerase IV, B subunit [Alcanivorax sp. DG881]
          Length = 628

 Score =  532 bits (1369), Expect = e-149,   Method: Composition-based stats.
 Identities = 246/647 (38%), Positives = 366/647 (56%), Gaps = 26/647 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++NY + +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A  I+V+
Sbjct: 2   ANNYTSENIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHAKSIKVT 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +G + V D+GRG+PV+ HP    K  +E+IL+TLH+GGKF N+ Y+ SGGLHGVG+S
Sbjct: 59  LLKDGGVEVEDDGRGMPVDMHP-VQKKPGVEVILSTLHSGGKFSNNNYQFSGGLHGVGVS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS +L + V R   +   +F  G   S LE  + V +   GT + F PD K F   
Sbjct: 118 VVNALSTKLEILVKRDGQLHRMEFGDGEKRSDLEVIDTVGKRNTGTILRFWPDAKYFDSP 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
                 RL  + ++KA L   +           +     E + + F  GL  YL      
Sbjct: 178 -KMSVTRLKHLLRAKAVLCPGLLVTL-------DNQLTGESDAWQFDDGLIEYLLESSRG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  E F G    +      V+WA+ W  E  E    +Y N I T +GGTH +GLR  
Sbjct: 230 WERVPQEPFNGAMSAETE---AVDWAVTWLPEGGELIQEAYVNLIPTAQGGTHVNGLRSG 286

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + +  +D+   A  +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEFRNLLPRGVKLTPEDIWDRAAFVLSVKMQDPQFAGQTKERLSSRQTAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L Q+  EA KL +  I  +++RLR    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFSLWLNQHTDEAEKLADLCINNAQKRLR--AAKKVTRKKVTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           + +    +E+F+VEGDSAGGSAKQAR+R  QA++PLRGKI+N     S ++  +Q+I D+
Sbjct: 405 TSDDPSQSEIFLVEGDSAGGSAKQARDRVYQAIMPLRGKIMNTWEVDSNEVLGSQEIHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             ALG    S      LRY KV I+ DAD DG HIA+L+   F +    L++  H+F+  
Sbjct: 465 AVALGIEPGSDDL-GSLRYGKVCILADADSDGLHIATLICALFLRHFPALVKHGHVFVAM 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDA 635
           PPL+RI  G +  YA D+E +  +L+  K   K GK+ ++RFKGLGEM   QL+ET M  
Sbjct: 524 PPLYRIDVGKEVYYALDKEERDGVLDRIKAEKKRGKVNVTRFKGLGEMNPLQLRETTMAR 583

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           + R L+R++++ D  + +     ++K    +A +R  +++E+ +  +
Sbjct: 584 DTRRLVRLDVSTDDGTHQLMDMLLSK---KRASDRKVWLEEKGNLAE 627


>gi|226946371|ref|YP_002801444.1| DNA topoisomerase IV subunit B [Azotobacter vinelandii DJ]
 gi|226721298|gb|ACO80469.1| DNA topoisomerase IV, B subunit [Azotobacter vinelandii DJ]
          Length = 630

 Score =  532 bits (1369), Expect = e-149,   Method: Composition-based stats.
 Identities = 248/649 (38%), Positives = 360/649 (55%), Gaps = 26/649 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   AQTYNADAIEVLSGLDPVRKRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHAKSVQVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+ILT LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHEDNSLEVIDDGRGMPVDIHPE-EGVPGVELILTKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R    +   F+ G   S LE    V +   GT + F PD   + D 
Sbjct: 118 VVNALSTRVEVRVRRDGNEYRMAFADGFKASELEIVGSVGKRNTGTSVHFWPDA-RYFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  ARL  + ++KA L   +   +             EK E+++  GL++YL   + +
Sbjct: 177 PRFSVARLKHVLKAKAVLCPGLSVGFEDKGS-------GEKVEWHYEDGLRSYLADAVGD 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVA 337
              +  E FTG        R  VEWA+ W  E  E    SY N I TD+GGTH +GLR  
Sbjct: 230 FPRLPEEPFTGSF---AASREAVEWALLWLPEGGEFRSESYVNLIPTDQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAEL-TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E  +   R + +  +D+      +LS+ + EP+F+GQTK +L S +A   V
Sbjct: 287 LLDAMREFCEFRSLLPRGVKLAPEDVWERIAFVLSMKLAEPQFSGQTKERLSSREAAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L ++P    +L E  I  +  RL+    R+V RK   +   LPGKLADC
Sbjct: 347 SGVVKDAFSLWLNEHPELGLQLAELAISNAGRRLK--AGRKVERKKITQGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +       ELF+VEGDSAGGSAKQAR++  QA++PLRGKILN       ++  +Q++ D+
Sbjct: 405 AGQDPLRAELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNTWEVDGGEVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L+E  H+ +  
Sbjct: 465 AVAIGIDPGSADL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRPLVEAGHVHVAM 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDA 635
           PPL+RI  G +  YA DE  +  ILE      K GK +++RFKGLGEM   QL+ET MD 
Sbjct: 524 PPLYRIDLGKEIHYALDEAERDGILERLTAEKKRGKPQVTRFKGLGEMNPLQLRETTMDP 583

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           N R L+++ ++    + +        L   +A +R  +++ + +  + +
Sbjct: 584 NTRRLVQLTLDDFDGTREVMDML---LAKKRAGDRKSWLETKGNLAEVL 629


>gi|238917987|ref|YP_002931501.1| DNA gyrase subunit B [Edwardsiella ictaluri 93-146]
 gi|238867555|gb|ACR67266.1| DNA gyrase, B subunit, putative [Edwardsiella ictaluri 93-146]
          Length = 804

 Score =  532 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 230/574 (40%), Positives = 346/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+ YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY   I V
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHSDNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L + + R   +  Q +  G+P +PL+      +  GTR+ F P  + F + 
Sbjct: 121 SVVNALSEKLELVIRRDGHVHEQIYRHGVPAAPLKVVGDT-DLTGTRVRFWPSMETFSNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V       +   E       + F++ GG+K +++   +N
Sbjct: 180 VEFQYDILAKRLRELSFLNSGVSIRLCDKRNDRE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   +F   T K       VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y E      K  IS   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNSYMENEGYTKKSKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+ + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 350 ESLMNERLAEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPAHSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQMSIALDG 563



 Score =  136 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV I   +       
Sbjct: 719 FEQALDWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPEGRRMLRVTIKDAV----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKASNLD 803


>gi|119713193|gb|ABL97261.1| DNA topoisomerase IV subunit B [uncultured marine bacterium
           EB0_50A10]
          Length = 631

 Score =  532 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 239/647 (36%), Positives = 364/647 (56%), Gaps = 22/647 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A ++YDA +I +L GL+PV+ RPGMY   TD    +HL  EV+DN++DE ++G+ + I++
Sbjct: 2   AKNSYDAEAIEVLSGLDPVKKRPGMY---TDTSNPNHLIQEVLDNSVDEALSGHCSNIKI 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +G + V D+GRG+PV+ HP+    S +E+IL  LHAG KF    Y  SGGLHGVG+
Sbjct: 59  AVLKDGNIRVSDDGRGMPVDIHPEH-KVSGVELILCKLHAGAKFSGDDYNFSGGLHGVGV 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGD 218
           SVVNALS+ L V V R +      FS G  +S L++  +V     GT ITF+P+PK F D
Sbjct: 118 SVVNALSENLEVRVKRDSKEHQITFSNGNKVSELKEVGEVGLRNTGTSITFKPNPKYFED 177

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
                   L  + ++KA L   ++  ++ +K+  +K      E++YF  GLK+YL    E
Sbjct: 178 I-EVQIKTLKHLLKAKAVLCPGLRIEFNNEKKSNDK------EKWYFEDGLKSYLVDSSE 230

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVA 337
              L+         +             +    +N    +Y N I T +GG+H +G +  
Sbjct: 231 GLELVLEHSMVCSKQSD-VQELEFAINWSQKTLKNKLDETYVNLIPTPQGGSHLNGFKSG 289

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   IK++ +      + + I +DD++ SA+ I+S  ++ P+FAGQTK +L S D    V
Sbjct: 290 LLDSIKEFCDYRNLLPKGLKINADDVINSAIFIVSSKLQNPQFAGQTKERLDSKDHMSFV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
            +  +D F  +L  +  E  K+ E  I  ++ R +     E  +    +   LPGKL+DC
Sbjct: 350 SSTTKDTFSIWLNTHTEEGEKIAELAIISAQTRAKVSNIVERKKT--FKGPALPGKLSDC 407

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR RS QA++PLRGKILN     S +I  +Q+I +L
Sbjct: 408 NSQDLNETELFLVEGDSAGGSAKQARERSFQAIMPLRGKILNTWDLESSEIIKSQEIKNL 467

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    +      LRY K+ I+ DAD DG HIA+LL   F +    L+++  +++  
Sbjct: 468 STAIGVLPGNSDL-SSLRYGKICILADADSDGLHIATLLCALFLRHYKPLVQEGRIYISM 526

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFK-KHGKGKIEISRFKGLGEMLASQLKETAMDA 635
           PPL+RI  G   +YA D++ +++I+  FK K GK KI   RFKGLGEM  SQL+ET MD 
Sbjct: 527 PPLYRIDCGKDVLYALDDKQREEIVSTFKGKKGKPKINTQRFKGLGEMNPSQLRETVMDP 586

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
             R L+++ I+   N+       ++K     A  R ++++++ S   
Sbjct: 587 ATRQLVQLSISSSDNANSMMDLLLSK---KNAPARKEWLEKKGSLAK 630


>gi|261868257|ref|YP_003256179.1| DNA topoisomerase IV subunit B [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413589|gb|ACX82960.1| DNA topoisomerase IV, B subunit [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 632

 Score =  532 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 247/646 (38%), Positives = 356/646 (55%), Gaps = 22/646 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + NY A+ I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE +AG+A  IEV 
Sbjct: 2   TTNYSANEITVLKDLEPVQLRPGMY---TDTTRPNHLAQEVIDNSVDEALAGFATKIEVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  + V+DNGRG+PV+ HP     S +E+I++ LHAGGKF N  Y  SGGLHGVGIS
Sbjct: 59  LHKDQSIEVIDNGRGMPVDIHP-VEKVSGVEVIMSKLHAGGKFSNKNYTFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ + VTV R   I+   F  G  +  L        +             + D  
Sbjct: 118 VVNALSERVDVTVKRNGEIYKIAFENGKKVEDLTVIGTCGRRTTGTTVHFKPNPKYFDSE 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L   ++  +  +    E         + + GGL  YL   +   
Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDNVNDTEDT-------WLYQGGLNDYLMEAVNGL 230

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +  + F G+   +   +  V WA+ W  E  E    SY N I T  GGTH +GLR  L
Sbjct: 231 VTLPEQPFIGEFNGE---KEAVSWALLWLPEGGELIGESYVNLIPTALGGTHVNGLRQGL 287

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E      R + + +DDL      +LS+ +++P+FAGQTK +L S  +   + 
Sbjct: 288 LDAMREFCEFRNLLPRGVKLTADDLWDRCAYVLSLKMQDPQFAGQTKERLSSRQSAVFIG 347

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             ++D F  +L QN  +A  L +  I  ++ RLR    ++V RK  +    LPGKLADCS
Sbjct: 348 GVVKDAFSLWLNQNIQQAELLADMAISSAQRRLR--AAKKVVRKKLVSGPALPGKLADCS 405

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
               + TELF+VEGDSAGGSAKQAR+R  QA+LPLRGKILN      E++  +Q++ D+ 
Sbjct: 406 SQDINFTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPEQVLASQEVHDIA 465

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG    +      LRY KV I+ DAD DG HIA+LL   F +    L+E  H+++  P
Sbjct: 466 VALGIDPDNSDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVELGHVYVAMP 524

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G    YA DE  K+ IL+  K   K K  + RFKGLGEM   QL+ET MD N 
Sbjct: 525 PLYRIDLGKDVFYALDESEKEAILDRLKGK-KCKPNVQRFKGLGEMNPMQLRETTMDPNT 583

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++         ++T ++++ L+  K A++R  ++Q +   +D
Sbjct: 584 RRLVQLTFEAQSEEKRETIETMDMLLAKKRAEDRKNWLQAKGDQVD 629


>gi|121998762|ref|YP_001003549.1| DNA topoisomerase IV subunit B [Halorhodospira halophila SL1]
 gi|121590167|gb|ABM62747.1| DNA topoisomerase IV subunit B [Halorhodospira halophila SL1]
          Length = 636

 Score =  532 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 246/650 (37%), Positives = 361/650 (55%), Gaps = 22/650 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
                  YDAS I +L GLEPVR RPGMY   T+     HL  EVIDN++DE +AG+A  
Sbjct: 2   TTKTQQTYDASDIEVLTGLEPVRRRPGMY---TETNRPDHLAQEVIDNSVDEAVAGHARR 58

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV++  +G L V D+GRG+PV+ HP       +E+IL  LHAGGKF + +Y  SGGLHG
Sbjct: 59  IEVTVHADGSLEVSDDGRGMPVDMHP-TEGVPAVEVILGRLHAGGKFSSKSYRYSGGLHG 117

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+SVVNALS  L V + R     +  FS G  + PLE+  K R   GT + F PD   F
Sbjct: 118 VGVSVVNALSTRLQVHIRRDGAEHTIAFSAGERIEPLERVGKTRE-TGTTLRFWPDTSYF 176

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                F  ARL  + ++KA L   +            +   PE   +Y+  GL+ YL   
Sbjct: 177 DSPR-FSRARLEHLLRAKAVLCPGLTVILRD--ATGGEGQEPEVLTWYYEDGLRDYLAGA 233

Query: 277 LENRSLISSEIFTGK-TEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLR 335
           + +   +    FT +   +       + W     E +    SY N I T +GGTH +GLR
Sbjct: 234 VADYEHLPDPPFTARLGSEHEEMECALVW---LPEGSGPAESYVNLIPTPQGGTHVNGLR 290

Query: 336 VALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
             LT  ++++ EL     R + I  +D+      +LSV + EP+FAGQTK +L S +   
Sbjct: 291 TGLTEAMREFCELRNLLPRGVRIAPEDVWEHISYVLSVKMHEPQFAGQTKERLSSRNCAA 350

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454
            V  A++D F  +L ++   A ++++ V+  ++   R+R  ++V RK       LPGKLA
Sbjct: 351 FVSGAVKDAFSLWLNEHTQSAEQIVDLVVRAAQ--RRQRAAKKVTRKRVGSGPALPGKLA 408

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC+      +ELF+VEGDSAGGSAKQAR R  QAV+PLRGKILN      +++  +Q++ 
Sbjct: 409 DCTGQDPARSELFLVEGDSAGGSAKQAREREFQAVMPLRGKILNTWEVAPDEVMASQEVH 468

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           D+  ALG    S+     LRY KV ++ DAD DGAHIA+LL   F +    L+   H+++
Sbjct: 469 DIAVALGVDPGSEDL-SGLRYHKVCVLADADPDGAHIATLLCALFQRHFPALVAGGHVYV 527

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAM 633
             PPL+RI  G ++ YA D + +Q IL+  +    KGK++ +RFKGLGEM   QL+ET M
Sbjct: 528 AMPPLYRIDVGKQTFYALDRDERQGILDRIEAERIKGKVQETRFKGLGEMNPVQLRETTM 587

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQERASFID 682
             + R L+++ ++       +T+  +  L+G   A +R ++++ + +  +
Sbjct: 588 APDTRRLVQLTVDD----PDETERLLGMLLGRGAAAQRREWLESKGNLAE 633


>gi|212219466|ref|YP_002306253.1| DNA topoisomerase IV subunit B [Coxiella burnetii CbuK_Q154]
 gi|212013728|gb|ACJ21108.1| topoisomerase IV subunit B [Coxiella burnetii CbuK_Q154]
          Length = 641

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 247/652 (37%), Positives = 365/652 (55%), Gaps = 24/652 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              ++    Y A +I +L GLEPV+ RPGMY   TD    +HL  E IDN++DE IAG+A
Sbjct: 7   PTKKTTGKGYTAEAIEVLSGLEPVKRRPGMY---TDTSRPNHLAHEAIDNSVDEAIAGFA 63

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             +EV L  +G L V+D+GRG+P++ HP+    + +E+ILT LHAG KF   TYE SGGL
Sbjct: 64  QNVEVILYKDGSLEVIDDGRGMPIDVHPEH-KLTGVELILTRLHAGAKFSTKTYEYSGGL 122

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213
           HGVGISVVNALS +L V V +   I+   F+ G   S L       +++ GT I F PD 
Sbjct: 123 HGVGISVVNALSKKLTVQVKKDGKIYQMDFAHGEKTSKLRPVGSCNKSESGTSIHFWPD- 181

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
             + D   F  + L    ++KA L   +   +  +          ++ ++Y+  GLKTYL
Sbjct: 182 SHYFDSVKFGVSALKHTMRAKAVLCLGLTVHFIDE-------NTGQRLQWYYAEGLKTYL 234

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESG 333
              L +R  +  E + G    + T +     A    ++     SY N I T +GGTH +G
Sbjct: 235 ADSLRDRERLPEEPWVGSFSGE-TEKADWALAWLPEDDEGIRESYVNLIPTPQGGTHVNG 293

Query: 334 LRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           LR  L   ++++ E+ +   R + + S+D+      +LSV ++EP+F+GQTK +L S  +
Sbjct: 294 LRTGLLEAMREFCEIHKLLPRNLKLASEDIWEQCHYVLSVKMQEPQFSGQTKERLTSRQS 353

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
              V   ++D F  +L  N      L E VI  +++RL     +++ RK       LPGK
Sbjct: 354 AVFVSGVVKDAFSLWLNHNVEIGKTLAELVIANAQKRLCM--SKKIERKKVTTGPALPGK 411

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC  +     ELF+VEGDSAGGSAKQAR+++ QA++PLRGKILN     +E++  +Q 
Sbjct: 412 LADCILSDPMQCELFLVEGDSAGGSAKQARDKNFQAIMPLRGKILNTWEVDTEQVLASQA 471

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           + D+  A+G    S    E LRY K+ I+ DAD DG HIA+LL   F +  Y L+   H+
Sbjct: 472 VHDIAIAIGVDPDSSNL-EGLRYGKICILADADSDGYHIATLLCALFMKHFYPLVVSGHV 530

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKET 631
           ++  PPL+RI  G    YA DEE K+ +L+  K    KG I I RFKGLGEM  SQL+ET
Sbjct: 531 YVAMPPLYRIDVGKDVFYALDEEEKEGVLDRIKAEKLKGAINIQRFKGLGEMNPSQLRET 590

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            M+ + R L+R+ +     S   T+  ++ L+  K A +R  +++++ +  +
Sbjct: 591 TMNPDTRHLVRLTV----KSKDKTEQLLDMLLAKKRAADRRDWLEKKGNLAE 638


>gi|161348145|ref|ZP_02095533.1| DNA topoisomerase IV, B subunit [Coxiella burnetii 'MSU Goat Q177']
 gi|164601296|gb|EDQ95073.1| DNA topoisomerase IV, B subunit [Coxiella burnetii 'MSU Goat Q177']
          Length = 636

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 247/652 (37%), Positives = 365/652 (55%), Gaps = 24/652 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              ++    Y A +I +L GLEPV+ RPGMY   TD    +HL  E IDN++DE IAG+A
Sbjct: 2   PTKKTTGKGYTAEAIEVLSGLEPVKRRPGMY---TDTSRPNHLAHEAIDNSVDEAIAGFA 58

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             +EV L  +G L V+D+GRG+P++ HP+    + +E+ILT LHAG KF   TYE SGGL
Sbjct: 59  QNVEVILYKDGSLEVIDDGRGMPIDVHPEH-KLTGVELILTRLHAGAKFSTKTYEYSGGL 117

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213
           HGVGISVVNALS +L V V +   I+   F+ G   S L       +++ GT I F PD 
Sbjct: 118 HGVGISVVNALSKKLTVQVKKDGKIYQMDFAHGEKTSKLRPVGSCNKSESGTSIHFWPD- 176

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
             + D   F  + L    ++KA L   +   +  +          ++ ++Y+  GLKTYL
Sbjct: 177 SHYFDSVKFGVSALKHTMRAKAVLCLGLTVHFIDE-------NTGQRLQWYYAEGLKTYL 229

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESG 333
              L +R  +  E + G    + T +     A    ++     SY N I T +GGTH +G
Sbjct: 230 ADSLRDRERLPEEPWVGSFSGE-TEKADWALAWLPEDDEGIRESYVNLIPTPQGGTHVNG 288

Query: 334 LRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           LR  L   ++++ E+ +   R + + S+D+      +LSV ++EP+F+GQTK +L S  +
Sbjct: 289 LRTGLLEAMREFCEIHKLLPRNLKLASEDIWEQCHYVLSVKMQEPQFSGQTKERLTSRQS 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
              V   ++D F  +L  N      L E VI  +++RL     +++ RK       LPGK
Sbjct: 349 AVFVSGVVKDAFSLWLNHNVEIGKTLAELVIANAQKRLCM--SKKIERKKVTTGPALPGK 406

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC  +     ELF+VEGDSAGGSAKQAR+++ QA++PLRGKILN     +E++  +Q 
Sbjct: 407 LADCILSDPMQCELFLVEGDSAGGSAKQARDKNFQAIMPLRGKILNTWEVDTEQVLASQA 466

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           + D+  A+G    S    E LRY K+ I+ DAD DG HIA+LL   F +  Y L+   H+
Sbjct: 467 VHDIAIAIGVDPDSSNL-EGLRYGKICILADADSDGYHIATLLCALFMKHFYPLVVSGHV 525

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKET 631
           ++  PPL+RI  G    YA DEE K+ +L+  K    KG I I RFKGLGEM  SQL+ET
Sbjct: 526 YVAMPPLYRIDVGKDVFYALDEEEKEGVLDRIKAEKLKGAINIQRFKGLGEMNPSQLRET 585

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            M+ + R L+R+ +     S   T+  ++ L+  K A +R  +++++ +  +
Sbjct: 586 TMNPDTRHLVRLTV----KSKDKTEQLLDMLLAKKRAADRRDWLEKKGNLAE 633


>gi|84496197|ref|ZP_00995051.1| DNA gyrase subunit B [Janibacter sp. HTCC2649]
 gi|84382965|gb|EAP98846.1| DNA gyrase subunit B [Janibacter sp. HTCC2649]
          Length = 715

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 241/713 (33%), Positives = 347/713 (48%), Gaps = 62/713 (8%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86
                +   A   +S +Y A  +++LEGLE VR RPGMYIG TD + L H   E+IDNA+
Sbjct: 2   SPTSTAKKAATTKSSTDYSAHHLQVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNAV 61

Query: 87  DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146
           DE + G+ + IEV L  +G + V D  RGIPV+  P+    + +E++ T LHAGGKF   
Sbjct: 62  DEALGGHGDRIEVILHKDGSVEVRDVARGIPVDIEPR-TGLTGVEVVFTKLHAGGKFGGG 120

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK----------- 195
           +Y  SGGLHGVG SVVNALS  L V V R    ++  F RG P    +            
Sbjct: 121 SYTASGGLHGVGASVVNALSARLDVEVDRGGNTYAMSFRRGEPGYFPDVASADKSPDHEF 180

Query: 196 ------------KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
                        +  R   GTRI +  DP+IF   A FD   LL   +  ++L   +  
Sbjct: 181 TPYERTSELAIIGKAKRGVTGTRIRYWADPQIFIRDAEFDYDGLLGRARQTSFLVPGLAL 240

Query: 244 CWSCDKEIAEKYGI--PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-------- 293
               ++ +    G   P +E F   GG+  Y +    + ++       G           
Sbjct: 241 VIRDERGLPGTAGESGPHEEVFLHDGGISEYAEFLAPDPAVTDVWRLQGTGNFTETVPVL 300

Query: 294 --------KKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRGIKK 344
                   ++      V+ A+ W      +++S+ N I T +GGTH +G   AL +  +K
Sbjct: 301 DAKGHMSPQEVERECEVDVAVRWGTGYDAKVSSFVNIIATPKGGTHMAGFEQALLKVFRK 360

Query: 345 YAELT---QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV----E 397
             E+        +  +  DD++     +++V + EP+F GQTK  L +   +  V    E
Sbjct: 361 QLEVNARRLKVGSDKVDKDDILAGLTAVVTVRLAEPQFEGQTKEVLGTNAVRAIVGRVIE 420

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
             L             +A  LLE V    + R+  R  +E   +K A+    LP KLADC
Sbjct: 421 KELTANLTSTKRGEKQQAAMLLEKVTAEMKSRISARLHKETQRKKNALETSSLPAKLADC 480

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
             N    TELFIVEGDSA G+AK ARN   QA+LP+RGKILNV  A    +  N +   +
Sbjct: 481 RSNDVDRTELFIVEGDSALGTAKLARNSDIQALLPIRGKILNVQKASLTDMLGNAECAAI 540

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           +Q LG  +   +  +  RY KVIIMTDADVDGAHI +LLLT F++ M  L+E   ++   
Sbjct: 541 IQVLGAGSGRSFDVDAARYGKVIIMTDADVDGAHIRTLLLTLFFRYMRPLVEAGRVYAAV 600

Query: 577 PPLFRIT------QGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLK 629
           PPL RI       +  + +Y + E   +K +    K G+  K  + R+KGLGEM A QL 
Sbjct: 601 PPLHRIEVAGMGARKGELIYTYSEGEMRKTVASLAKKGRNIKQPMQRYKGLGEMDADQLA 660

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           ET MD + RTL +V +       + ++     LMG +   R  FI + ++ +D
Sbjct: 661 ETTMDPHHRTLRKVTM----ADAEASERIFELLMGNEVAPRRDFIVKGSARLD 709


>gi|269137362|ref|YP_003294062.1| DNA gyrase subunit B [Edwardsiella tarda EIB202]
 gi|267983022|gb|ACY82851.1| DNA gyrase subunit B [Edwardsiella tarda EIB202]
 gi|304557463|gb|ADM40127.1| DNA gyrase subunit B [Edwardsiella tarda FL6-60]
          Length = 804

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 230/574 (40%), Positives = 346/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+ YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY   I V
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHSDNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L + + R   +  Q +  G+P +PL+       + GTR+ F P  + F + 
Sbjct: 121 SVVNALSEKLELVIRRDGHVHEQIYRHGVPAAPLKVVGDT-EQTGTRVRFWPSMETFSNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V       +   E       + F++ GG+K +++   +N
Sbjct: 180 VEFQYDILAKRLRELSFLNSGVSIRLRDKRNDRE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   +F   T K       VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y E      K  IS   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNSYMENEGYTKKSKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+ + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 350 ESLMNERLAEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPAHSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQMSIALDG 563



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV I   +       
Sbjct: 719 FEQALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPEGRRMLRVTIKDAV----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKASNLD 803


>gi|259508306|ref|ZP_05751206.1| DNA gyrase subunit B [Corynebacterium efficiens YS-314]
 gi|259164124|gb|EEW48678.1| DNA gyrase subunit B [Corynebacterium efficiens YS-314]
          Length = 660

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 240/672 (35%), Positives = 354/672 (52%), Gaps = 63/672 (9%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIG T  + LHHL  EV+DN++DE +AGYA+ ++V+L  +G + V+DNGRGIPVE H  
Sbjct: 1   MYIGSTGSRGLHHLIWEVVDNSVDEAMAGYADRVDVTLLEDGGVEVIDNGRGIPVEMH-- 58

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
                T+++++T LHAGGKFD+ +Y +SGGLHGVGISVVNALS  +   + +    + Q 
Sbjct: 59  ASGAPTVQVVMTQLHAGGKFDSDSYAVSGGLHGVGISVVNALSTRVEAHIKKDGKHWYQN 118

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           F+  IP   +E         GT I F PD +IF     FD   + +  Q  A+L+  +  
Sbjct: 119 FNNSIPEDLVE--GANARGTGTSIRFWPDAEIFETT-DFDFDTISRRLQEMAFLNKGLTM 175

Query: 244 CWSCDKEIAEKYGIPEKEE----------------------------------------- 262
             + ++   E+  +    E                                         
Sbjct: 176 TLTDNRASDEELELEALAEQGDTAVELSLDQIDADGETQLVDAEVTDAPKKPKKREKKKI 235

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           F++P GL+ Y+      ++ I   I + + +        VE A+ W       + ++ NT
Sbjct: 236 FHYPNGLEDYVNHLNRTKTPIHPSIVSFEAKA---AEHEVEIAMQWNSSYKESVHTFANT 292

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I T EGGTHE G R ALT  + +YA   +   ++  ++  DD       ++SV + EP+F
Sbjct: 293 INTFEGGTHEEGFRSALTSLMNRYAREHKLLKEKEANLTGDDCREGLSAVISVRVSEPQF 352

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-V 438
            GQTKTKL + + +  V+    +   H+L  NP EA  ++   +  ++ RL  RK R+ V
Sbjct: 353 EGQTKTKLGNTEIKSFVQRMANEHIGHWLEANPAEAKVIINKAVGSAQARLAARKARDLV 412

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK+A     LPGKLADC       +EL+IVEGDSAGGSAK  R+   QA+LPLRGKILN
Sbjct: 413 RRKSATDLGGLPGKLADCRSKDPEKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKILN 472

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  +K+  N ++  ++ ALG     ++    LRY K+++M DADVDG HIA+LLLT 
Sbjct: 473 VEKARLDKVLKNSEVQAIITALGTGIHDEFDINKLRYHKIVLMADADVDGQHIATLLLTL 532

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIE---- 613
            ++ M DLI + H++L  PPL+++     +  +A+ +E + + LEE    G+ KI     
Sbjct: 533 LFRFMPDLIAEGHVYLAQPPLYKLKWQRGEPGFAYSDEERDQQLEEGLAAGR-KINKDDG 591

Query: 614 ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKF 673
           I R+KGLGEM  ++L ET MD + R L RV    DL   +   +  + LMG     R  F
Sbjct: 592 IQRYKGLGEMNPNELWETTMDPSVRILRRV----DLADAQRADELFSILMGDDVVARRSF 647

Query: 674 IQERASFIDDVG 685
           I   A  +  + 
Sbjct: 648 ITRNAKDVRFLD 659


>gi|293390334|ref|ZP_06634668.1| DNA topoisomerase IV, B subunit [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290950868|gb|EFE00987.1| DNA topoisomerase IV, B subunit [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 632

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 247/646 (38%), Positives = 358/646 (55%), Gaps = 22/646 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + NY A+ I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DEV+AG+A  IEV 
Sbjct: 2   TTNYSANEITVLKDLEPVQLRPGMY---TDTTRPNHLAQEVIDNSVDEVLAGFATKIEVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  + V+DNGRG+PV+ HP     S +E+I++ LHAGGKF N  Y  SGGLHGVGIS
Sbjct: 59  LHKDQSIEVIDNGRGMPVDIHP-VEKVSGVEVIMSKLHAGGKFSNKNYTFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ + VTV R   ++   F  G  +  L        +             + D  
Sbjct: 118 VVNALSERVDVTVKRNGEVYKIAFENGKKVEDLTVIGTCGRRTTGTTVHFKPNPKYFDSE 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L   ++  +  +    E         + +  GL  YL   +   
Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDNVNDTEDT-------WLYQDGLNDYLMEAVNGL 230

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +  + F G+   +   +  V WA+ W  E  E    SY N I T  GGTH +GLR  L
Sbjct: 231 VTLPEQPFIGEFNGE---KEAVSWALLWLPEGGELIGESYVNLIPTALGGTHVNGLRQGL 287

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E      R + + +DDL      +LS+ +++P+FAGQTK +L S  +   + 
Sbjct: 288 LDAMREFCEFRNLLPRGVKLTADDLWDRCAYVLSLKMQDPQFAGQTKERLSSRQSAVFIG 347

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             ++D F  +L QN  +A  L +  I  ++ RLR    ++V RK  +    LPGKLADCS
Sbjct: 348 GVVKDAFSLWLNQNIQQAELLADMAISSAQRRLR--AAKKVIRKKLVSGPALPGKLADCS 405

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
               + TELF+VEGDSAGGSAKQAR+R  QA+LPLRGKILN      E++  +Q++ D+ 
Sbjct: 406 SQDINFTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPEQVLASQEVHDIA 465

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG    +      LRY KV I+ DAD DG HIA+LL   F +    L+E  H+++  P
Sbjct: 466 VALGIDPDNSDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVELGHVYVAMP 524

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G +  YA DE  K+ IL+  K   KGK  + RFKGLGEM   QL+ET MD N 
Sbjct: 525 PLYRIDLGKEVFYALDESEKEAILDRLKGK-KGKPNVQRFKGLGEMNPMQLRETTMDPNT 583

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++         ++T ++++ L+  K A++R  ++Q +   +D
Sbjct: 584 RRLVQLTFEAQSEEKRETIETMDMLLAKKRAEDRKNWLQAKGDQVD 629


>gi|330721164|gb|EGG99282.1| Topoisomerase IV subunit B [gamma proteobacterium IMCC2047]
          Length = 631

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 244/647 (37%), Positives = 356/647 (55%), Gaps = 26/647 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           ++  Y+A SI +L GL+PV+ RPGMY   T+    +HL  EVIDN++DE +AG+A  ++V
Sbjct: 2   STGTYNADSIEVLSGLDPVKRRPGMY---TETTRPNHLAQEVIDNSIDEAMAGFARRVDV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +G L+V D+GRG+PV+ HP+    S +E+ILT LHAGGKF N  Y+ SGGLHGVG+
Sbjct: 59  ELHNDGSLSVSDDGRGMPVDIHPE-EGVSGVELILTRLHAGGKFSNKNYQFSGGLHGVGV 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS  L+V + R    +   F+ G     L +   V +   GT + F P+ K F  
Sbjct: 118 SVVNALSYRLNVEIKRGGKKYRIAFASGDKTEDLIEIGTVGQRNTGTLVHFWPEAKYFDS 177

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F  +RL    ++KA L   ++  +         +   E+E + +  GL+ YL    +
Sbjct: 178 P-KFSVSRLKHTLRAKAVLCPGLEVNFID-------HNSGERESWCYEDGLQDYLTQATQ 229

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336
               I  E FTG            EWA+ W  E  E    SY N I T +GGTH +G R 
Sbjct: 230 GFETIPKEPFTGSLSGD---EEAAEWAVQWLPEGGELITESYVNLIPTAQGGTHVNGFRS 286

Query: 337 ALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            +   ++++ E      R + + ++DL      ILS+ + +P+F+GQTK +L S      
Sbjct: 287 GMIDSLREFCEFRNLLPRGVKLSAEDLWDRCAYILSIKMSDPQFSGQTKERLSSRQCAPF 346

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           V   ++D F  +L  N   A  L +  I  ++ RLR    ++V RK   +   LPGKLAD
Sbjct: 347 VSGVVKDAFSLWLNSNTEAAELLADMAINNAQRRLR--ASKKVVRKKVTQGPALPGKLAD 404

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS    + TELF+VEGDSAGGSAKQAR+R  QA+LPLRGKILN     S +I  +Q++ D
Sbjct: 405 CSSQDVNQTELFLVEGDSAGGSAKQARDRVFQAILPLRGKILNTWEVDSSEILGSQEVHD 464

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  ALG    S    + LRY K+ I+ DAD DG HIA+LL   F +    ++   H+++ 
Sbjct: 465 ISVALGVDPGSDNL-DGLRYGKICILADADSDGLHIATLLCALFVRHFKPMVMAGHVYVA 523

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMD 634
            PPLFRI  G +  YA  E  KQ +L+      K GK+ + RFKGLGEM   QL+ET M 
Sbjct: 524 MPPLFRIDVGKEVYYALSEYEKQGVLDRIAAEKKRGKVNVQRFKGLGEMNPMQLRETTMT 583

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
            + R L+R+ ++    + +        L   ++ +R ++++E  + +
Sbjct: 584 PDTRRLVRLTLDAGDGTHEVMDKL---LAKKRSQDRKQWLEESGNLV 627


>gi|308801547|ref|XP_003078087.1| putative DNA gyrase B subunit (ISS) [Ostreococcus tauri]
 gi|116056538|emb|CAL52827.1| putative DNA gyrase B subunit (ISS) [Ostreococcus tauri]
          Length = 684

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 245/652 (37%), Positives = 359/652 (55%), Gaps = 32/652 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S  YDA SI++L+GLEPVR RPGMYIG T  K LHHL  EV+DN++DEV AG+A+ ++V+
Sbjct: 57  SGEYDAGSIQVLQGLEPVRKRPGMYIGSTSTKGLHHLVWEVLDNSVDEVQAGHASHVQVT 116

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST--YEISGGLHGVG 158
           +D +GF+TV+D+GRGIP + HP    KS+LE +LT LHAGGKF   +  Y +SGGLHGVG
Sbjct: 117 VDDDGFVTVMDDGRGIPTDVHP-VTGKSSLETVLTILHAGGKFGGDSSGYHVSGGLHGVG 175

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           ISVVNALS+ + VTV     +              ++++   NK+GT + F+PD +IF  
Sbjct: 176 ISVVNALSELVEVTVHATGNMKE------------KQQDGSGNKKGTMVRFKPDDQIFDK 223

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              FD   +    +  A+L+   +      K    K     +E+  +  GLK Y+     
Sbjct: 224 -VKFDNNIIRTRMKELAFLNKGTELHL---KTFNTKTKSYVEEKLVYAEGLKDYVLDLTA 279

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
           + + +     T   E +G  R            +  +  Y N+I T +GGTH  GL+ +L
Sbjct: 280 DATRLHEP-ITFSGEMEGI-RVEGSLCWTADSYSDTLLGYANSIRTIDGGTHIDGLKYSL 337

Query: 339 TRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           T+ I   +   +  +    ++  D +     G+++V++ EPEF GQTKT+L + + +R V
Sbjct: 338 TKTINNASRKAKLLKDADSNLGGDHVREGLSGVIAVWVPEPEFEGQTKTRLGNSEVRRIV 397

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIER-SEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           EN   D    +   N  +   +              +R +  V RKT +   RLPGKL+D
Sbjct: 398 ENIASDAVMGHFEFNSADLKAVFAKAQSAFKAAEAAKRARELVRRKTVLTANRLPGKLSD 457

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA-SAGSEKIRNNQQIM 514
           CS + A  TE+F+VEGDSAGGS KQ R+RS QAVLPLRGKI+NV     +  +  N +I 
Sbjct: 458 CSSSDADRTEIFLVEGDSAGGSCKQGRDRSFQAVLPLRGKIMNVERKLDAAALYKNTEIT 517

Query: 515 DLVQALGCRTRSQY-REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
           +++ ALG  T  +      LRY K+II+TDADVDGAHI +LLLTF Y+   DL E+  ++
Sbjct: 518 NMISALGLGTMGEDLDTSALRYSKIIILTDADVDGAHIRTLLLTFLYRYQRDLFEKGFVY 577

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
              PPL+++  G K  Y +D++  Q++L    +       I RFKGLGEM+  QL  T +
Sbjct: 578 AAVPPLYKVAVGKKETYCYDDDDLQRVLAALPEGANK--HIQRFKGLGEMMPEQLWSTTL 635

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D   R L R+ ++             + LM  + D R + I+E  + +  + 
Sbjct: 636 DPKTRLLKRLTVDD----ASAANHMFSTLMSKEVDPRRRLIEEEGAALASID 683


>gi|145637577|ref|ZP_01793234.1| DNA topoisomerase IV subunit B [Haemophilus influenzae PittHH]
 gi|145269263|gb|EDK09209.1| DNA topoisomerase IV subunit B [Haemophilus influenzae PittHH]
          Length = 632

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 249/646 (38%), Positives = 357/646 (55%), Gaps = 22/646 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + NY A  I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE +AG+A+ IEV 
Sbjct: 2   TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRPNHLAQEVIDNSVDEALAGFASKIEVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  + V DNGRG+PV+ HP   + S +E+ILT LHAGGKF N  YE +GGLHGVGIS
Sbjct: 59  LHPDQSIEVTDNGRGMPVDTHP-TESVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ + + V R   ++   F  G  +  LE       +             + D A
Sbjct: 118 VVNALSERVDIQVKRNGEVYKIAFENGSKVEELEVIGTCGRRTTGTTVHFKPNPKYFDSA 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L   ++  +              ++ + +  GL  YL   +   
Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDK-------VNNTQDIWLYEDGLSDYLIEAVNGF 230

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +  + F G+ +        V WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 231 ETLPEKPFVGEFKG---TNEAVSWALLWLPEGSELIGESYVNLIPTIQGGTHVNGLRQGL 287

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              I+++ E      R + + +DD+      ILS+ +++ +FAGQTK +L S  +   V 
Sbjct: 288 LDAIREFCEFRNLLPRGVKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVS 347

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             L+D F  +L QN  +A KL E  I  ++ RLR    ++V RK  +    LPGKLADC 
Sbjct: 348 GVLKDAFSLWLNQNVQDAEKLAEIAISSAQRRLR--AAKKVVRKKLVSGPALPGKLADCG 405

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR+R  QA+LPLRGKILN      +++  + +I D+ 
Sbjct: 406 SQDLEKTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDIA 465

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG    S      LRY KV I+ DAD DG HIA+LL   F +    L++  H+++  P
Sbjct: 466 VALGIDPDSNDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMP 524

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI    +  YA DE  K+ IL+   K+ KGK  + RFKGLGEM  SQL+ET MD N 
Sbjct: 525 PLYRIDLNKEVFYALDESEKEAILDRL-KNKKGKPNVQRFKGLGEMNPSQLRETTMDPNT 583

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++  +   +   DT + ++ L+  K +++R  ++Q +   +D
Sbjct: 584 RRLVQLTYDLGEDQGSDTLELMDMLLAKKRSEDRKNWLQAKGDQVD 629


>gi|237729021|ref|ZP_04559502.1| DNA gyrase subunit B [Citrobacter sp. 30_2]
 gi|226909643|gb|EEH95561.1| DNA gyrase subunit B [Citrobacter sp. 30_2]
          Length = 804

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 227/574 (39%), Positives = 349/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVTDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+  +  Q +  G+P +PL    +     GT++ F P  + F + 
Sbjct: 121 SVVNALSQKLELVIRREGKVHQQTYVHGVPQAPLAVTGET-ELTGTQVRFWPSHETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 VEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ LE  +K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALEWLQKESRRGLAIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|327482439|gb|AEA85749.1| DNA topoisomerase IV subunit B [Pseudomonas stutzeri DSM 4166]
          Length = 628

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 243/647 (37%), Positives = 355/647 (54%), Gaps = 26/647 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y A +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V L 
Sbjct: 2   SYTAEAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHARSVQVILH 58

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  L V+D+GRG+PV+ HP+      +E+ILT LHAGGKF N  Y+ SGGLHGVGISVV
Sbjct: 59  QDNSLEVIDDGRGMPVDIHPE-EGVPGVELILTKLHAGGKFSNKNYQFSGGLHGVGISVV 117

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221
           NALS  + VTV R    +   F+ G   S LE    V +   GT + F  DPK F     
Sbjct: 118 NALSTRVEVTVKRDGNEYRMSFADGFKASDLEVIGSVGKRNTGTSVRFWADPKYFDSP-K 176

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F  +RL  + ++KA L   +   +             EK E+++  GL++YL   +    
Sbjct: 177 FSISRLKHVLKAKAVLCPGLSVSFEDK-------STGEKVEWHYEDGLRSYLVDSVSEYQ 229

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALT 339
            +  E F G           V+WA+ W  E  E    SY N I T +GGTH +GLR  L 
Sbjct: 230 RLPDEPFVGALAGNTE---AVDWALLWLPEGGESVQESYVNLIPTAQGGTHVNGLRQGLL 286

Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E      R + +  +D+      +LS+ ++EP+F+GQTK +L S +A   V  
Sbjct: 287 DAMREFCEFRNLLPRGLKLAPEDIWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSG 346

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L  +P    +L E  I  +  RL+    ++V RK   +   LPGKLADC+ 
Sbjct: 347 VVKDAFSLWLNAHPELGMQLAELAISNAGRRLK--AGKKVERKKITQGPALPGKLADCAG 404

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 ELF+VEGDSAGGSAKQAR++  QA++PLRGKILN       ++  +Q++ D+  
Sbjct: 405 QDPMRAELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNTWEVDGGEVLASQEVHDIAV 464

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+G    +      LRY K+ I+ DAD DG HIA+LL   F Q    L+E  H+++  PP
Sbjct: 465 AIGVDPGATDL-AQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVEAGHVYVAMPP 523

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANK 637
           L+RI  G    YA DE  +  ILE       +GK +++RFKGLGEM   QL+ET MD N 
Sbjct: 524 LYRIDLGKDIFYALDEAERDGILERLVAEKRRGKPQVTRFKGLGEMNPPQLRETTMDPNT 583

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           R L+++ ++    + +        L   +A +R  +++ + +  + +
Sbjct: 584 RRLVQLTLDDFEGAREVMDML---LAKKRAGDRKSWLESKGNLAEVL 627


>gi|156936079|ref|YP_001439995.1| DNA gyrase subunit B [Cronobacter sakazakii ATCC BAA-894]
 gi|156534333|gb|ABU79159.1| hypothetical protein ESA_03973 [Cronobacter sakazakii ATCC BAA-894]
          Length = 804

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 228/566 (40%), Positives = 350/566 (61%), Gaps = 18/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVSDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+  I  Q +  G+P +PL       ++ GT++ F P  + F + 
Sbjct: 121 SVVNALSQKLELVIRREGKIHQQTYVHGVPQAPLAVTGDT-DQTGTQVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++        +++ F++ GG+K +++   +N
Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLVDKRD-------GKQDHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLAEYLLENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPAHSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  D+E   + 
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQY 555



 Score =  136 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|294651940|ref|ZP_06729229.1| DNA topoisomerase IV subunit B [Acinetobacter haemolyticus ATCC
           19194]
 gi|292822172|gb|EFF81086.1| DNA topoisomerase IV subunit B [Acinetobacter haemolyticus ATCC
           19194]
          Length = 627

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 258/645 (40%), Positives = 375/645 (58%), Gaps = 28/645 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y A S+ +L GL+PVR RPGMY   TD    +HL  EVIDNA+DE +AG+AN + V++ 
Sbjct: 3   QYTAQSLEVLSGLDPVRRRPGMY---TDTSRPNHLAQEVIDNAVDEALAGHANQVTVTIY 59

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G L+V DNGRG+PV+ HP++  +S +EIILT LHAGGKF    Y+ SGGLHGVGISVV
Sbjct: 60  EDGSLSVEDNGRGMPVDIHPEY-GQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISVV 118

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGDKA 220
           NALS  + V V R   ++   F +G P++PL   E    +   GT + F P+ K F    
Sbjct: 119 NALSTRVEVAVQRHGNLYQMAFEQGEPVAPLSVLEGKVAKRATGTTVRFWPEAKYFDSP- 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L    ++KA L+  +K  +  DK   EK        + F  GL  YL  +LE+R
Sbjct: 178 KFALKALKHNLKAKAVLAAGLKIIY-DDKINNEKIE------WQFENGLVDYLMDELEDR 230

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVAL 338
            ++ +  F    + +   R   E+AI W  E  E    SY N I T +GGTH +GLR  +
Sbjct: 231 EILPAPAFVSSGQAE---RAACEFAICWNVEGGEQIQESYVNLIPTAQGGTHVNGLRSGV 287

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           T  ++++ EL     R + + ++D+      ILS+  +EP+F+GQTK +L S +A   V 
Sbjct: 288 TEALREFCELRNLLPRNMKLSAEDVWDGVNFILSLKFQEPQFSGQTKERLSSREASNIVL 347

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
           N  +D F  +L Q+   AT+L E  I ++  RL+    ++V RK  +    LPGKLADC 
Sbjct: 348 NIAKDAFALWLNQHAEIATQLAEMAIAKAGRRLK--AAKKVERKKIVAGPALPGKLADCV 405

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +ELFIVEGDSAGGSAKQAR+++ QA++P+RGKILN     S+++  +Q++ D+ 
Sbjct: 406 GLTREDSELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIA 465

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S     +LRY K+ I+ DAD DG HIA+LL   F +    L+E+ HL++  P
Sbjct: 466 IAIGVDPGSDDL-SELRYGKICILADADSDGLHIATLLCALFVKHFPTLVEEGHLYVAMP 524

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G    YA D++  + IL+  K  G    +I+RFKGLGEM ASQL+ET MD N 
Sbjct: 525 PLYRIDIGKDVHYALDDDELEAILKNIK--GNKNPQITRFKGLGEMNASQLRETTMDPNT 582

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           R L++++++    +          L   +A +R  +++++ +  D
Sbjct: 583 RRLVQLDLDDAHLTAGLLDKL---LAKKRAADRKHWLEQKGNLAD 624


>gi|321309552|ref|YP_004191881.1| DNA gyrase subunit B [Mycoplasma haemofelis str. Langford 1]
 gi|319801396|emb|CBY92042.1| DNA gyrase subunit B [Mycoplasma haemofelis str. Langford 1]
          Length = 662

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 235/656 (35%), Positives = 359/656 (54%), Gaps = 28/656 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY  SSI++LEGLE VR RPGMYIG TD K LHHL  EV+DN++DEV+AG+A+ + ++L 
Sbjct: 21  NYTDSSIKVLEGLEAVRERPGMYIGSTDFKGLHHLIWEVLDNSVDEVLAGHADEVVLTLK 80

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            N  +++ DNGRGIP   +P+  N S L  + T LHAGGKFDN++Y+ SGGLHGVG + V
Sbjct: 81  PNHVISISDNGRGIPTGINPQ-TNISNLITVFTILHAGGKFDNNSYKTSGGLHGVGSTCV 139

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGDKA 220
           NALS+ + +TV R        F  G  +             K GT++T++PD  IF   +
Sbjct: 140 NALSEFMEITVCRNGEEHFVSFKNGGKIDKEPTLVSQVPAEKTGTKVTWKPDFSIFDK-S 198

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +D   +    +  AYL+   +  +        K        F+F  G+  ++     +R
Sbjct: 199 DYDVELIETRLERLAYLNKGKRFVFDNQISNEVKE-------FFFKEGISDWVTNLNHSR 251

Query: 281 SLISSEIFTGKT-------EKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
             I+  IF  +             +  ++  A  +   + P + S+CN I T  GGTH  
Sbjct: 252 KAINDVIFLKEDGTVKNRRTPDVQNSISISCAFQYTLGDAPIVYSFCNNIYTASGGTHLE 311

Query: 333 GLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
             +  L   I++ +   +  K ++ I+  D++     I+S+    PE++GQTK  L +++
Sbjct: 312 SFKDGLLSCIRERSLEAKLIKESVDILKSDILAGLTAIVSLNYSNPEYSGQTKEVLSNIE 371

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK-LRLP 450
            +  +   + + F  +L +N  +   +L+ V +    RL+    R+ +RK A+   +   
Sbjct: 372 IKSFIREKVEELFGRFLEENTDQCKAILQRVDQERNLRLKVEMARQTDRKLALEGFMSFA 431

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA-GSEKIRN 509
           GKLADC+      +EL++VEGDSAGGSAK ARNR  QA+LP++GK+LNV     +  I  
Sbjct: 432 GKLADCTTKSVDFSELYVVEGDSAGGSAKSARNREYQAILPIKGKLLNVWKKTNTSSIVE 491

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N++I  L+ ++GC    ++  E LRY K+IIMTDADVDG+HI  LLLTF Y+ M  LIE+
Sbjct: 492 NEEIKSLISSIGCAYGDKFDREKLRYNKIIIMTDADVDGSHIRILLLTFIYRFMRPLIEE 551

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
            H+++  PPL+R     + VY  D++ K + + +  K      EISRFKGLGEM   QL 
Sbjct: 552 GHVYIAQPPLYRAFTNKEVVYLFDDKKKDEFMADKGKS--KSWEISRFKGLGEMSPEQLW 609

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +T M+  +R + +V +      ++      + LMG K   R +FI    S I ++ 
Sbjct: 610 QTTMNPEERIICKVTVED----MEQVTGIFDDLMGKKVHPRTEFILANYSNIRNLD 661


>gi|50954716|ref|YP_062004.1| DNA topoisomerase IV subunit B [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50951198|gb|AAT88899.1| DNA gyrase subunit B [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 694

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 236/696 (33%), Positives = 340/696 (48%), Gaps = 64/696 (9%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           AS +Y A  + +LEGLE VR RPGMYIG TD + L H   E+IDN++DE +AG+ + I+V
Sbjct: 2   ASSDYSARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALAGHGSSIDV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +  + V D  RGIPV+  PK    + +E++ T LHAGGKF + +Y  SGGLHGVG 
Sbjct: 62  VLHPDNSVEVRDRARGIPVDVEPK-TGLTGVEVVFTKLHAGGKFGSGSYAASGGLHGVGA 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIP---------------------LSPLEKKEK 198
           SVVNALS+ L V V R    ++  F RG P                      S L    K
Sbjct: 121 SVVNALSERLDVEVDRDGKTWAMSFHRGEPGVFEDGEAVPGPDAPFTPFVSGSELRVVGK 180

Query: 199 V-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           V +   GTRI +  D  IF   A F    L+   +  A+L   +       +        
Sbjct: 181 VAKGVTGTRIRYWADRHIFTKGAEFSVDDLIGRARQTAFLVPGIAITIDDKRS-----AE 235

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT----------------HRGT 301
            E   F + GGL  +      +  +  +   TG+     T                    
Sbjct: 236 GESTTFKYDGGLSEFADFLAPDSPITETWRLTGEGTFTETVPVLSDSGAMVTTELKRECH 295

Query: 302 VEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIK---KYAELTQNKRAISI 357
           V+ A+ W       + S+ N I T +GG+H++G    L + ++   +            +
Sbjct: 296 VDIALRWGTGYDTVMRSFVNIIATPKGGSHQAGFDQGLLKFLRQRVELNARRLKAGTDKL 355

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT----VENALRDPFDHYLVQNPI 413
             DD+M     +L+V + EP+F GQTK  L +   +      V+ +L + F      +  
Sbjct: 356 EKDDVMAGLTAVLTVRLPEPQFEGQTKEVLGTPAVRAIVAGVVQKSLSERFGSSKRDDKT 415

Query: 414 EATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
           ++  LL+ V+   + R+  R  +E   RK A+    LP KL DC  +    +ELFIVEGD
Sbjct: 416 QSALLLDKVVAEMKSRISARAHKETQRRKNALETSSLPAKLVDCRSSDVANSELFIVEGD 475

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           SA G+A++AR+   QA+LP+RGKILNV  A    + +N +   ++Q +G  +   +    
Sbjct: 476 SALGTARRARDSEYQALLPIRGKILNVQKASVSDMLSNAECAAIIQVIGAGSGRTFDIGS 535

Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI------TQGT 586
            RY KVIIM+DADVDGAHI +LLLT F++ M  +IE+  +F   PPL R+      +   
Sbjct: 536 ARYGKVIIMSDADVDGAHIRTLLLTLFFRYMRPMIEEGRVFAAVPPLHRVVVVNPGSNPN 595

Query: 587 KSVYAHDEEHKQKILEEFKKHGKGKIE-ISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645
           ++VY + E   Q +L + KK GK   E I R+KGLGEM A QL  T MD   RTL RV +
Sbjct: 596 ETVYTYSEAELQAVLGDLKKRGKKYQEPIQRYKGLGEMDADQLATTTMDRGHRTLRRVRV 655

Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           +      +        LMG     R +FI   A  +
Sbjct: 656 SH----AEGANRVFELLMGNDVAPRKEFIIAGADDL 687


>gi|78047304|ref|YP_363479.1| DNA topoisomerase IV subunit B [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78035734|emb|CAJ23425.1| topoisomerase IV subunit B [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 673

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 248/676 (36%), Positives = 372/676 (55%), Gaps = 25/676 (3%)

Query: 10  STLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT 69
           +  PP  + S  K + S     S     +  +  Y+A+ I +L GL+PV+ RPGMY   T
Sbjct: 15  AARPPTERRSRAKNRLSPHTCASFHVPTRCMNTRYNAADIEVLSGLDPVKRRPGMY---T 71

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
           D    +HL  EVIDN++DE +AG+A  +EV+L  +G   V D+GRG+PV+ HP+      
Sbjct: 72  DTARPNHLAQEVIDNSVDEALAGHAKQVEVTLYKDGSCEVSDDGRGMPVDIHPE-EKIPG 130

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
           +E+ILT LHAGGKF N  Y  SGGLHGVG+SVVNALS ++ + + R+ +    +F  G  
Sbjct: 131 VELILTRLHAGGKFSNRNYTFSGGLHGVGVSVVNALSTKVELFIKREGSEHRMEFRDGNA 190

Query: 190 LSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
            S LE    V +   GTR+ F  DPK F     F+   L  + ++KA L   +      +
Sbjct: 191 ASKLEVVGTVGKKNTGTRLRFWADPKYFDTP-KFNVRALRHLLRAKAVLCPGLTVKLHDE 249

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
                     E++ +YF  GL+ YL+ ++    L+ +++F G  +K       V+WA AW
Sbjct: 250 -------ATGEQDSWYFENGLRDYLKGEMAEHELLPADLFVGSLKKDTEI---VDWAAAW 299

Query: 309 CEENP-EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISA 366
             E      SY N I T + GTH +GLR  LT  ++++ +      R + +  +D+    
Sbjct: 300 VPEGELVQESYVNLIPTAQHGTHVNGLRSGLTDALREFCDFRNLLPRGVKLAPEDVWDRV 359

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             +LS+ + +P+F+GQTK +L S  A   +E A  D F  YL QN     K+ +  I+R+
Sbjct: 360 TFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAAHDAFSLYLNQNVEIGEKIAQIAIDRA 419

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
             RL+   ++++ RK   +   LPGKLADC       TELF+VEGDSAGGSAKQAR++  
Sbjct: 420 SARLK--TEKQIVRKKVTQGPALPGKLADCISQDLSRTELFLVEGDSAGGSAKQARDKDF 477

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADV 546
           QA+LPLRGKILN     S  +  ++++ +L  A+GC          LRY KV+I+ DAD 
Sbjct: 478 QAILPLRGKILNTWEVASGSVLASEEVHNLAIAIGCDPGKDDI-TGLRYGKVVILADADS 536

Query: 547 DGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKK 606
           DG HIA+LL   F Q    L+   H+F+  PPLFR+  G +  YA DEE K  +L++  +
Sbjct: 537 DGLHIATLLTALFLQHFPALVAAGHVFVAMPPLFRVDVGKQVFYALDEEEKTTLLDKIAR 596

Query: 607 HG-KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT 665
              KG+I ++RFKGLGEM   QL+E+ +  + R L+++ I+    +          L   
Sbjct: 597 EKMKGQISVTRFKGLGEMNPQQLRESTIHPDTRRLVQLTIDDGEQTRSLMDML---LAKK 653

Query: 666 KADERFKFIQERASFI 681
           +A +R ++++ +    
Sbjct: 654 RASDRKQWLETKGDLA 669


>gi|290956928|ref|YP_003488110.1| GyrB-like gyrase subunit [Streptomyces scabiei 87.22]
 gi|260646454|emb|CBG69551.1| GyrB-like gyrase subunit [Streptomyces scabiei 87.22]
          Length = 706

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 237/686 (34%), Positives = 338/686 (49%), Gaps = 51/686 (7%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY A  + +LEGLE VR RPGMYIG TD + L H   E+IDN++DE + GY + IEV L
Sbjct: 21  SNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALGGYCDHIEVIL 80

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  + V DNGRGIPV+  PK    S +E+++T LHAGGKF   +Y  SGGLHGVG SV
Sbjct: 81  HDDASVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGASV 139

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN--------------KRGTRI 207
           VNALS  L V V R  +  +  F RG+P +        +               + GTR+
Sbjct: 140 VNALSARLDVEVDRNGSTHAISFRRGVPGAFAGIGPDAKFETGGLRKGKRIPKTRTGTRV 199

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            +  D +IF   A      L +  +  A+L   +      +  + E     E E F F G
Sbjct: 200 RYWADRQIFLKDAKLSLEHLHQRARQTAFLVPGLTIVVRDEFGLGEGGSKGE-ESFRFDG 258

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKG----------------THRGTVEWAIAWCEE 311
           G+  + +    ++ +     F+G+   K                 T    V+ A+ W   
Sbjct: 259 GISEFCEYLASDKPVCDILRFSGQGTFKETVPVLDEHGQMTPTQVTRELGVDVAMRWGTG 318

Query: 312 NPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVG 368
                 S+ N I T +GGTH +G   A+   + +     +  R        DD +     
Sbjct: 319 YDTTLKSFVNIIATPKGGTHVAGFEQAVASTMNEVLRAKKMLRVAEDDIVKDDALEGLTA 378

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER--- 425
           +++V + EP+F GQTK  L +  A+R V   +      +L     +A      V+E+   
Sbjct: 379 VVTVRLAEPQFEGQTKEVLGTSAARRIVAQVIAKELKAFLTSAKRDAAAQARVVMEKAVA 438

Query: 426 --SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483
                   R+ +    RKTA+    LP KLADC  +    +ELFIVEGDSA G+AK ARN
Sbjct: 439 AARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDDVERSELFIVEGDSALGTAKLARN 498

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTD 543
              QA+LP+RGKILNV  +    +  N +   ++Q +G  +   +  +  RY K+I+MTD
Sbjct: 499 SEFQALLPIRGKILNVQKSSVTDMLKNAECGAIIQVIGAGSGRTFDIDAARYGKIIMMTD 558

Query: 544 ADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-----TQGT-KSVYAHDEEHK 597
           ADVDG+HI  LLLT F + M  ++E   +F   PPL RI      +G  K VY + +   
Sbjct: 559 ADVDGSHIRCLLLTLFQRYMRPMVEAGRVFAAVPPLHRIELVQPKKGQDKYVYTYSDREL 618

Query: 598 QKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
           +  L EF+  G + K  I R+KGLGEM A QL ET MD   RTL R+ ++     L+  +
Sbjct: 619 RDRLLEFQSKGVRYKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRINLSD----LEAAE 674

Query: 657 DSINKLMGTKADERFKFIQERASFID 682
              + LMG     R +FI   A+ +D
Sbjct: 675 QVFDLLMGNDVAPRKEFISSSAATLD 700


>gi|317046242|ref|YP_004113890.1| DNA gyrase subunit B [Pantoea sp. At-9b]
 gi|316947859|gb|ADU67334.1| DNA gyrase, B subunit [Pantoea sp. At-9b]
          Length = 802

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 227/574 (39%), Positives = 350/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY + I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCSDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L +T+ R   +  Q +  G+P +PL       +  GTR+ F P  + F + 
Sbjct: 121 SVVNALSQKLELTIRRDGKVHQQTYVHGVPQAPLAVVGDT-DATGTRVRFWPSHETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++        +K+ +++ GG+K +++    N
Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLEDKRD-------DKKDHYHYEGGIKAFVEYLNRN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   +F   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KNPIHPNVFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLAEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +E+++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQIAIALDG 563



 Score =  136 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ ++   K  +  + + R+KGLGEM   QL ET MD + R +LRV I   +       
Sbjct: 717 FEQAIDWLVKESRRGLSVQRYKGLGEMNPEQLWETTMDPDSRRMLRVTIKDAI----AAD 772

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 773 QLFTTLMGDAVEPRRAFIEENALKAANID 801


>gi|227875503|ref|ZP_03993643.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC
           35243]
 gi|227843839|gb|EEJ54008.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC
           35243]
          Length = 736

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 237/697 (34%), Positives = 342/697 (49%), Gaps = 63/697 (9%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y A  + +LEGLE VR RP MYIG TD++ L H   E+IDN++DE +AG+ + IEV L
Sbjct: 41  QDYSAHHLSVLEGLEAVRKRPAMYIGSTDQRGLMHCLWEIIDNSVDEALAGFCDHIEVFL 100

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +    V DNGRG+PV+  P     S +E++ T LHAGGKFD+  Y+++GGLHGVG SV
Sbjct: 101 YPDYSAEVRDNGRGVPVDTVP-GTGLSGVEVVYTKLHAGGKFDSGLYKVAGGLHGVGASV 159

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIP--------------------LSPLEKKEKVRN 201
           VNALS  + V V R   I   +F RG P                     S L K  KV  
Sbjct: 160 VNALSARMDVQVDRGGDIHQLQFRRGEPGVFTDHEALSPNNPFAAFEDESKLTKLGKVSK 219

Query: 202 -KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
            + GTR+ F  D +IF     FD   L +  +  ++L   ++   +  +        P+ 
Sbjct: 220 SRTGTRVRFWADFQIFPKSTAFDFESLKERARKTSFLVPGLRITVTDSR-----GEEPQS 274

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-----------------KKGTHRGTVE 303
           E +   GG   Y++    ++ +  +    G                    ++      V+
Sbjct: 275 ETYLHKGGTVDYVEFLAPDKGITGTWQLVGSGTFQETVQVLNPKTGHLEPQELERTCEVD 334

Query: 304 WAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK-----RAISI 357
            A+ W      +  SY N I T  GGTH  G   AL + ++   +    K     +   I
Sbjct: 335 IALRWGVGYDTVEQSYVNIIETPVGGTHVQGFETALVKTLRTEIQANSRKLKLGSKDNKI 394

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             +D++     +++V + EPEF GQTK  L S   +  V   + +    +L     +   
Sbjct: 395 EKEDILAGMTAVITVRLPEPEFEGQTKEALGSAAVKPIVSQVVTERLKAFLHSKKRDDKT 454

Query: 418 L----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
                LE ++     RL  R  +E   RK A+    LP KL DC  N    +ELFIVEGD
Sbjct: 455 QVSALLEKIVAEMRSRLSARLSKEITRRKNALETSTLPTKLVDCRSNDVEKSELFIVEGD 514

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           SA G+AK ARN   QA+ P+RGKILNV   G+ ++  N +   ++Q +G  +   +  + 
Sbjct: 515 SALGTAKSARNSEFQALFPIRGKILNVQKTGTAQMLGNAECAAIIQVIGAGSGRTFDLDQ 574

Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT---QGT--- 586
            RY KVI+MTDADVDGAHI +LLLT F++ M  LI    ++   PPL RI    +G    
Sbjct: 575 ARYGKVIMMTDADVDGAHIRTLLLTLFFRYMRPLIAAGRVYAAVPPLHRIQVNAKGKTPG 634

Query: 587 KSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645
           +  Y + E+   + L    ++G+  K  I R+KGLGEM A QL ET MD   RTL R+ +
Sbjct: 635 EFRYTYSEDQLHRELAYLARNGRSYKEPIQRYKGLGEMDADQLAETTMDPQHRTLRRIRL 694

Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
             +   L   +D    LMG+    R  FI + A+ +D
Sbjct: 695 VDE-QPLHTAEDVFEVLMGSAVPPRRDFIVQGAARLD 730


>gi|307325031|ref|ZP_07604235.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces violaceusniger Tu
           4113]
 gi|306889177|gb|EFN20159.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces violaceusniger Tu
           4113]
          Length = 707

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 237/687 (34%), Positives = 343/687 (49%), Gaps = 52/687 (7%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY A  + +LEGLE VR RPGMYIG TD + L H   E+IDN++DE + G+ + IEV L
Sbjct: 21  SNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLSHCLWEIIDNSVDEALGGFCDHIEVIL 80

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G + V DNGRGIPV+  PK    S +E+++T LHAGGKF   +Y  SGGLHGVG SV
Sbjct: 81  HDDGSVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGASV 139

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV---------------RNKRGTR 206
           VNALS  L V V R     +  F RG+P    E                    + + GTR
Sbjct: 140 VNALSARLDVEVDRDAKTHAISFRRGVPGIFTESGPDAPFDPSSGLLKGKRVPKTRTGTR 199

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I +  D +IF   A      L    +  A+L   +      ++   E    P +E F + 
Sbjct: 200 IRYWADRQIFLKDAKLSLETLYARARQTAFLVPGLTLVVRDER-ALEGREGPVEETFRYD 258

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTVEWAIAWCE 310
           GG+  + +   +++++      +G                    + T    V+ A+ W  
Sbjct: 259 GGISEFCEYLAQDKAVCDVLRLSGHGTFKETVPVLDERGHMTPTEVTRDLGVDIALRWGT 318

Query: 311 ENP-EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAV 367
                + S+ N I T +GGTH +G   A+ R + +     +  R        DD M    
Sbjct: 319 GYDATVKSFVNIIATPKGGTHVAGFERAIARTVNEALRSAKLLRVAEDDVVKDDAMEGLT 378

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER-- 425
            +++V + EP+F GQTK  L +  A R V N +      +L     +A +    V+E+  
Sbjct: 379 AVVTVRLAEPQFEGQTKEVLGTSAASRIVANVVSKELKEFLTSPKRDAKQQARAVLEKVV 438

Query: 426 ---SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
                    R+ +    RKTA+    LP KLADC  +    +ELFIVEGDSA G+AK AR
Sbjct: 439 AAARTRIAARQHKEAQRRKTALESSSLPAKLADCRSDDVGRSELFIVEGDSALGTAKLAR 498

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           N   QA+LP+RGKILNV  +    +  N +   ++Q +G  +   +  +  RY KVI + 
Sbjct: 499 NSEFQALLPIRGKILNVQKSSISDMLKNVECGAIIQVIGAGSGRTFDIDQARYGKVIFLA 558

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-----TQGT-KSVYAHDEEH 596
           DADVDGAHI  LLLT F + M  ++EQ  +F   PPL R+      +G  K +Y + ++ 
Sbjct: 559 DADVDGAHIRCLLLTLFQRYMRPMVEQGRVFSAVPPLHRVELVNPKRGQSKYIYTYSDQE 618

Query: 597 KQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
            Q+ L +  ++  + K  I R+KGLGEM A QL ET MD   RTL R+ I+     L+  
Sbjct: 619 LQETLLDLQRREVRYKDGIQRYKGLGEMDADQLAETTMDPRHRTLRRINISD----LEAA 674

Query: 656 QDSINKLMGTKADERFKFIQERASFID 682
           + + + LMG +   R +FI   A+ +D
Sbjct: 675 ERAFDLLMGNEVAPRKEFITNSAATLD 701


>gi|261341641|ref|ZP_05969499.1| hypothetical protein ENTCAN_08109 [Enterobacter cancerogenus ATCC
           35316]
 gi|288315998|gb|EFC54936.1| DNA gyrase, B subunit [Enterobacter cancerogenus ATCC 35316]
          Length = 803

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 228/566 (40%), Positives = 349/566 (61%), Gaps = 18/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVTDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+  I  Q ++ G+P +PL       +K GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQREGKIHRQVYTHGVPQAPLAVTGDT-DKTGTLVRFWPSHETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG++ +++   +N
Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLKDKRDGKE-------DHFHYEGGIRAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  D+E   + 
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQY 555



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ LE   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 718 FEQALEWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 773

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 774 QLFTTLMGDAVEPRRAFIEENALKAANID 802


>gi|253681965|ref|ZP_04862762.1| DNA gyrase subunit B [Clostridium botulinum D str. 1873]
 gi|253561677|gb|EES91129.1| DNA gyrase subunit B [Clostridium botulinum D str. 1873]
          Length = 652

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 214/663 (32%), Positives = 341/663 (51%), Gaps = 34/663 (5%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
                ++YD + +  LE LEPVR+RPGMYIG T  K LHH   E++DN++DE+  GY + 
Sbjct: 5   ENKNKNSYDVTDLTSLEKLEPVRVRPGMYIGSTGTKGLHHCIWEILDNSIDEIANGYGDK 64

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           + + L+ +  +T++DNGRGIP   HP    KS +E++ T LH GGKF+N  Y+ SGGLHG
Sbjct: 65  VTLILNKDKSVTIIDNGRGIPTGIHP-IKKKSGVEMVFTELHTGGKFNNKNYKTSGGLHG 123

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV----------RNKRGTR 206
           VG +VVNALS+ + V V ++  I+ Q+F      S  +K               N  GT+
Sbjct: 124 VGAAVVNALSEWVEVEVYQKGHIYKQRFEYAEDKSLNKKMPGTPITPLEIIGDTNNTGTK 183

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           ITF+PD ++F     F    + +  Q  A+ +  +      +++            ++  
Sbjct: 184 ITFKPDKEVFSTT-DFKFEVIDERLQELAFQNKGITLVIKDERKEDIIEKE-----YHSE 237

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GL  +++   E+++ I  E    + E++  + +   E  I + + +   I SY N I T
Sbjct: 238 RGLLDFIEYLNESKTPIHKEPLIFEGEREVNSIKVYSEVCIQFTDSSTENIASYVNNIPT 297

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            E GTHE+G +  +TR  K++A       ++      DDL      IL V I  P F GQ
Sbjct: 298 TESGTHETGFKTGMTRAFKEWARKLNIVKEKDRGFEGDDLREGMTAILRVKISNPIFEGQ 357

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TKTKL + +A   +          ++  N   AT+++   +  +  R + +K  +   +K
Sbjct: 358 TKTKLGNNEAYTVMNELAYTKIGEWIEDNKEIATQIINNAVSAAARRDKIKKINDAEKKK 417

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
                  L GK++ C+       E  +VEGDSAGGSAKQAR+R  Q ++P +GKI+N   
Sbjct: 418 IGKGAAPLAGKVSICTLKKPDVCEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEK 477

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
              E +  ++++     A+G      Y E+DL+Y K+II++DADVDG HI +L +T+ Y+
Sbjct: 478 QRLENVLASEELKLFNTAIGTGVLENYNEDDLKYNKIIILSDADVDGYHIRTLWITYIYR 537

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
            M  LI   HL++  PPL+++ + +K      YA+ ++  +    E  K       I R+
Sbjct: 538 YMKSLITNGHLYIALPPLYKVYKNSKNGEVKRYAYSDDELEVAKREIGKGAL----IQRY 593

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           KGLGEM   QL +T ++   RTL ++ I          +  I+ LMG   + R  ++ + 
Sbjct: 594 KGLGEMNPDQLWDTTLNPETRTLQQITIED----AAKAEKMISLLMGDVVEPRRNYMYKY 649

Query: 678 ASF 680
           A F
Sbjct: 650 AEF 652


>gi|330807209|ref|YP_004351671.1| Topoisomerase IV subunit B [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375317|gb|AEA66667.1| Topoisomerase IV subunit B [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 634

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 244/654 (37%), Positives = 366/654 (55%), Gaps = 28/654 (4%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
              ++ +Y+A +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A  
Sbjct: 2   ATPSASSYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHARS 58

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           ++V L  +  L V D+GRG+PV+ HP+    S +E+ILT LHAGGKF N  Y+ SGGLHG
Sbjct: 59  VQVILHADHSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGLHG 117

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKI 215
           VGISVVNALS ++ V V R    +   F+ G   + LE    V +   GT + F PDPK 
Sbjct: 118 VGISVVNALSTQVRVRVKRDGNEYQMTFADGYKATELEVVGTVGKRNTGTSVYFAPDPKY 177

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     F  +RL  + ++KA L   +   +             EK E+++  GL++YL  
Sbjct: 178 FDSP-KFSVSRLKHVLKAKAVLCPGLLVSFEDK-------ATGEKVEWHYEDGLRSYLVD 229

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESG 333
            +     + +E F G        +  V+WA+ W  E  E    SY N I T +GGTH +G
Sbjct: 230 AVNYFERLPNEPFCGSLAGN---KEAVDWALLWLPEGGESVQESYVNLIPTAQGGTHVNG 286

Query: 334 LRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           LR  L   ++++ E      R + +  +D+      +LS+ ++EP+F+GQTK +L S +A
Sbjct: 287 LRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREA 346

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
              V   ++D F  +L  NP     L E  I  +  RL+    ++V RK   +   LPGK
Sbjct: 347 AAFVSGVVKDAFSLWLNANPETGLALAELAINNAGRRLK--ASKKVERKRITQGPALPGK 404

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC+      +ELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN       ++  +Q+
Sbjct: 405 LADCAGQDPMRSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGSEVLASQE 464

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           + ++  A+G    +      LRY K+ I+ DAD DG HIA+LL   F Q    L++  H+
Sbjct: 465 VHNIAVAIGVDPGAADM-SQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHV 523

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKET 631
           ++  PPL+RI  G +  YA DE  +  IL+    +  +GK +++RFKGLGEM   QL+ET
Sbjct: 524 YVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRET 583

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDV 684
            MD N R L+++ ++      + T + ++ L+  K A +R  +++ +    + +
Sbjct: 584 TMDPNTRRLVQLTLDD----FEATSEMMDMLLAKKRAGDRKSWLESKGDLAEVL 633


>gi|294638324|ref|ZP_06716577.1| DNA gyrase, B subunit [Edwardsiella tarda ATCC 23685]
 gi|291088577|gb|EFE21138.1| DNA gyrase, B subunit [Edwardsiella tarda ATCC 23685]
          Length = 804

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 229/566 (40%), Positives = 345/566 (60%), Gaps = 18/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+ YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY   I V
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHSDNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L + + R   +  Q +  G+P +PL+       + GTR+ F P  + F + 
Sbjct: 121 SVVNALSEKLELVIRRDGHVHEQIYHHGVPAAPLKMVGDT-EQTGTRVRFWPSMQTFSNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V       +   E       + F++ GG+K +++   +N
Sbjct: 180 VEFQYDILAKRLRELSFLNSGVSIRLRDKRNDRE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   +F   T K       VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y E      K  IS   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNSYMESEGYTKKNKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+ + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 350 ESLMNERLAEYLLENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPAHSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  D+E   + 
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQY 555



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV I   +       
Sbjct: 719 FEQALDWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPEGRRMLRVTIKDAV----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANLD 803


>gi|326776128|ref|ZP_08235393.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces cf. griseus
           XylebKG-1]
 gi|326656461|gb|EGE41307.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces cf. griseus
           XylebKG-1]
          Length = 708

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 235/709 (33%), Positives = 345/709 (48%), Gaps = 53/709 (7%)

Query: 20  SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79
                                S NY A  + +LEGLE VR RPGMYIG TD + L H   
Sbjct: 1   MTAETSVPSTAMLTGAGGDRDSSNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLW 60

Query: 80  EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139
           E+IDN++DE + G+ + IEV L  +  + V DNGRGIPV+  PK    S +E+++T LHA
Sbjct: 61  EIIDNSVDEALGGHCDQIEVILHDDASVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHA 119

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKF   +Y  SGGLHGVG SVVNALS  L V V R +   S  F RG+P    E+    
Sbjct: 120 GGKFGGGSYAASGGLHGVGASVVNALSARLDVEVDRNSATHSISFRRGVPGMFTEQGPDS 179

Query: 200 ---------------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244
                          + + GTR+ +  D +IF   A  +   L +  +  A+L   +   
Sbjct: 180 PFDPANGLRKGKRVPKTRTGTRVRYWADRQIFLKDARLNLDTLHQRARQTAFLVPGLTII 239

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------- 293
              ++ +  +      E F F GG+  + +   +++++   +  +G              
Sbjct: 240 VRDERGLDGEGKTE--ETFRFDGGISEFCEYLAQDKAVCDVQRLSGTGTFKETVPVLDDR 297

Query: 294 -----KKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
                 + T    V+ A+ W         S+ N I T +GGTH +G   +LT+ + +   
Sbjct: 298 GHMTATEVTRELAVDIALRWGTGYDTTVRSFVNIIATPKGGTHVTGFERSLTKTVNEALR 357

Query: 348 LTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
             +  R        DD +     +++V + EP+F GQTK  L +  A R V   +     
Sbjct: 358 SAKMLRVAEDDIVKDDALEGLTAVVTVRLAEPQFEGQTKEVLGTSAANRIVAGVVAKELK 417

Query: 406 HYLVQNPIEATKLLEWVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
            +L     +A      V+E+           R+ +    RKTA+    LP KLADC  + 
Sbjct: 418 AFLTSTKRDAKAQARAVLEKAVAAARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDD 477

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +ELFIVEGDSA G+AK ARN   QA+LP+RGKILNV  +    +  N +   ++Q +
Sbjct: 478 VERSELFIVEGDSALGTAKLARNSEFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVI 537

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           G  +   +  +  RY K++++ DADVDGAHI  LLLT F + M  ++E   +F   PPL 
Sbjct: 538 GAGSGRTFDIDAARYGKIVLLVDADVDGAHIRCLLLTLFQRYMRPMVEAGRVFAAVPPLH 597

Query: 581 RI-----TQGT-KSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAM 633
           RI      +G  K VY + +   ++ L EF +K+ + K  I R+KGLGEM A QL ET M
Sbjct: 598 RIELVQPKKGQDKYVYTYSDNELRQTLLEFQRKNVRIKESIQRYKGLGEMDADQLAETTM 657

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           D   RTL R+ I      L+ ++   + LMG +   R +FI   A+ +D
Sbjct: 658 DPRHRTLRRINIGD----LESSEQVFDLLMGNEVAPRKEFITSSAATLD 702


>gi|202078776|gb|ACH96434.1| DNA gyrase subunit B [Edwardsiella tarda]
          Length = 804

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 230/574 (40%), Positives = 346/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+ YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY   I V
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHSDNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L + + R   +  Q +  G+P +PL+       + GTR+ F P  + F + 
Sbjct: 121 SVVNALSEKLELVIRRDGHVHEQIYRHGVPAAPLKVVGDT-EQTGTRVRFWPSMETFSNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V       +   E       + F++ GG+K +++   +N
Sbjct: 180 VEFQYDILAKRLRELSFLNSGVSIRLRDKRNDRE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   +F   T K       VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y E      K  IS   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNSYMENEGYTKKSKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+ + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 350 ESLMNERLAEYLLENPSDAYIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPAHSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQMSIALDG 563



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV I   +       
Sbjct: 719 FEQALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPEGRRMLRVTIKDAV----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKASNLD 803


>gi|307701026|ref|ZP_07638051.1| DNA gyrase, B subunit, C-terminal domain protein [Mobiluncus
           mulieris FB024-16]
 gi|307614021|gb|EFN93265.1| DNA gyrase, B subunit, C-terminal domain protein [Mobiluncus
           mulieris FB024-16]
          Length = 722

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 237/697 (34%), Positives = 341/697 (48%), Gaps = 63/697 (9%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y A  + +LEGLE VR RP MYIG TD++ L H   E+IDN++DE +AG+ + IEV L
Sbjct: 27  QDYSAHHLSVLEGLEAVRKRPAMYIGSTDQRGLMHCLWEIIDNSVDEALAGFCDHIEVFL 86

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +    V DNGRG+PV+  P     S +E++ T LHAGGKFD+  Y+++GGLHGVG SV
Sbjct: 87  YPDYSAEVRDNGRGVPVDTVP-GTGLSGVEVVYTKLHAGGKFDSGLYKVAGGLHGVGASV 145

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIP--------------------LSPLEKKEKVRN 201
           VNALS  + V V R   I   +F RG P                     S L K  KV  
Sbjct: 146 VNALSARMDVQVDRGGDIHQLQFRRGEPGVFTDHEALSPNNPFAAFEDESKLTKLGKVSK 205

Query: 202 -KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
            + GTR+ F  D +IF     FD   L +  +  ++L   +    +  +        P+ 
Sbjct: 206 SRTGTRVRFWADFQIFPKSTAFDFESLKERARKTSFLVPGLCITVTDLR-----GEEPQS 260

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-----------------KKGTHRGTVE 303
           E +   GG   Y++    ++ +  +    G                    ++      V+
Sbjct: 261 ETYLHKGGTVDYVEFLAPDKGITDTWQLVGSGTFQETVQVLNPKTGHLEPQELERTCEVD 320

Query: 304 WAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK-----RAISI 357
            A+ W      +  SY N I T  GGTH  G   AL + ++   +    K     +   I
Sbjct: 321 IALRWGAGYDTVEQSYVNIIETPVGGTHVQGFETALVKTLRTEIQANSRKLKLGSKDNKI 380

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             +D++     +++V + EPEF GQTK  L S   +  V   + +    +L     +   
Sbjct: 381 EKEDILAGMTAVITVRLPEPEFEGQTKEALGSAAVKPIVSQVVTERLKAFLHSKKRDDKI 440

Query: 418 L----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
                LE ++     RL  R  +E   RK A+    LP KL DC  N    +ELFIVEGD
Sbjct: 441 QVSALLEKIVAEMRSRLSARLSKEITRRKNALETSTLPTKLVDCRSNDVEKSELFIVEGD 500

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           SA G+AK ARN   QA+ P+RGKILNV   G+ ++  N +   ++Q +G  +   +  + 
Sbjct: 501 SALGTAKSARNSEFQALFPIRGKILNVQKTGTAQMLGNAECAAIIQVIGAGSGRTFDLDQ 560

Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT---QGT--- 586
            RY KVI+MTDADVDGAHI +LLLT F++ M  LI    ++   PPL RI    +G    
Sbjct: 561 ARYGKVIMMTDADVDGAHIRTLLLTLFFRYMRPLIAAGRVYAAVPPLHRIQVNAKGKTPG 620

Query: 587 KSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645
           +  Y + E+   + L    ++G+  K  I R+KGLGEM A QL ET MD   RTL R+ +
Sbjct: 621 EFRYTYSEDQLHRELAYLARNGRSYKEPIQRYKGLGEMDADQLAETTMDPQHRTLRRIRL 680

Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
             +   L   +D    LMG+    R  FI + A+ +D
Sbjct: 681 VDE-QPLHTAEDVFEVLMGSAVPPRRDFIVQGAARLD 716


>gi|281413680|ref|ZP_06245422.1| DNA topoisomerase IV subunit B [Micrococcus luteus NCTC 2665]
          Length = 692

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 233/695 (33%), Positives = 333/695 (47%), Gaps = 60/695 (8%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
            A+  Y+A  + +LEGLE VR RPGMYIG TD + L H   E+IDN++DE +AG+   IE
Sbjct: 2   PANTEYNARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALAGFGQSIE 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           ++L  +G + V DNGRGIPV+  P+    S +E++ T LHAGGKF   +Y  SGGLHGVG
Sbjct: 62  ITLHPDGSVEVEDNGRGIPVDVEPR-TGLSGVEVVFTKLHAGGKFGGGSYAASGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE---------------------KKE 197
            SVVNALS  L V V R   +    F RG P    +                       +
Sbjct: 121 ASVVNALSSRLDVQVLRGGKVHQMSFRRGEPGRFQDGSRPSPDAPFEPSTDASPLDVVGK 180

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK--Y 255
             R + GTR+ +  D +IF   A F A  L    +  AYL   ++      +        
Sbjct: 181 AKRGQTGTRVRYWADEQIFVKDATFSAEELQARARQTAYLIPGLRITVKDLRRRPGTPGA 240

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT----------------EKKGTHR 299
             P +E F + GG+  +++       +       G                   +     
Sbjct: 241 DGPVEEVFQYDGGISEFVEHLTPATPVTDVWRIQGSGTFKERVPVLGEDGRTSMQDVQRT 300

Query: 300 GTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIK---KYAELTQNKRAI 355
             V+ A+ W      +  S+ N I T +GGTH+SG   AL +  +   +         + 
Sbjct: 301 CEVDVALRWDVGYDTVFRSFVNIIATPKGGTHQSGFEAALLKVFRAQVEANARRLKAGSD 360

Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415
            +  DD++     +L+V + EP+F GQTK  L +   +R V   +       L       
Sbjct: 361 KVEKDDVLAGMTAVLTVRLAEPQFEGQTKEILGTSAVRRIVSQVVEKQLTARLTSTARAQ 420

Query: 416 TKLLE----WVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
            + +      V+   + R+  R  +    RK A+    +P KLADC  N    +ELFIVE
Sbjct: 421 KQQVHTLLEKVVAEMKSRISARTHKENQRRKNALETSTMPAKLADCRSNDVASSELFIVE 480

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530
           GDSA G+AK AR+   QA+LP+RGKILNV  A    I  N +   L+Q +G      +  
Sbjct: 481 GDSALGTAKLARSSDFQALLPIRGKILNVQKASVSDILANAECAALIQVVGGGAGRSFDL 540

Query: 531 EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI---TQG-- 585
           +  RY KV++MTDADVDGAHI +LLLT F++ M  ++E   ++   PPL RI   T+G  
Sbjct: 541 DAARYGKVVLMTDADVDGAHIRTLLLTLFFRYMRPMVEAGRVYAAVPPLHRIEAVTRGVK 600

Query: 586 -TKSVYAHDEEHKQKILEEFKKHGKGKIE-ISRFKGLGEMLASQLKETAMDANKRTLLRV 643
             + +Y + E+     L   ++ G+   E I R+KGLGEM A QL ET MD   R L RV
Sbjct: 601 EREVIYTYSEQELHATLARLEQEGRSYREPIQRYKGLGEMDADQLAETTMDPRHRMLRRV 660

Query: 644 EINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
            I      ++  +   + LMG+    R  FI   A
Sbjct: 661 NI----AEVEAAERVFDLLMGSAVAPRKDFIISHA 691


>gi|269977250|ref|ZP_06184223.1| DNA gyrase subunit B [Mobiluncus mulieris 28-1]
 gi|269934553|gb|EEZ91114.1| DNA gyrase subunit B [Mobiluncus mulieris 28-1]
          Length = 706

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 237/697 (34%), Positives = 341/697 (48%), Gaps = 63/697 (9%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y A  + +LEGLE VR RP MYIG TD++ L H   E+IDN++DE +AG+ + IEV L
Sbjct: 11  QDYSAHHLSVLEGLEAVRKRPAMYIGSTDQRGLMHCLWEIIDNSVDEALAGFCDHIEVFL 70

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +    V DNGRG+PV+  P     S +E++ T LHAGGKFD+  Y+++GGLHGVG SV
Sbjct: 71  YPDYSAEVRDNGRGVPVDTVP-GTGLSGVEVVYTKLHAGGKFDSGLYKVAGGLHGVGASV 129

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIP--------------------LSPLEKKEKVRN 201
           VNALS  + V V R   I   +F RG P                     S L K  KV  
Sbjct: 130 VNALSARMDVQVDRGGDIHQLQFRRGEPGVFTDHEALSPNNPFAAFEDESKLTKLGKVSK 189

Query: 202 -KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
            + GTR+ F  D +IF     FD   L +  +  ++L   +    +  +        P+ 
Sbjct: 190 SRTGTRVRFWADFQIFPKSTAFDFESLKERARKTSFLVPGLCITVTDLR-----GEEPQS 244

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-----------------KKGTHRGTVE 303
           E +   GG   Y++    ++ +  +    G                    ++      V+
Sbjct: 245 ETYLHKGGTVDYVEFLAPDKGITDTWQLVGSGTFQETVQVLNPKTGHLEPQELERTCEVD 304

Query: 304 WAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK-----RAISI 357
            A+ W      +  SY N I T  GGTH  G   AL + ++   +    K     +   I
Sbjct: 305 IALRWGAGYDTVEQSYVNIIETPVGGTHIQGFESALVKTLRTEIQANSRKLKLGSKDNKI 364

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             +D++     +++V + EPEF GQTK  L S   +  V   + +    +L     +   
Sbjct: 365 EKEDILAGMTAVITVRLPEPEFEGQTKEALGSAAVKPIVSQVVTERLKAFLHSKKRDDKT 424

Query: 418 L----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
                LE ++     RL  R  +E   RK A+    LP KL DC  N    +ELFIVEGD
Sbjct: 425 QVSALLEKIVAEMRSRLSARLSKEITRRKNALETSTLPTKLVDCRSNDVEKSELFIVEGD 484

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           SA G+AK ARN   QA+ P+RGKILNV   G+ ++  N +   ++Q +G  +   +  + 
Sbjct: 485 SALGTAKSARNSEFQALFPIRGKILNVQKTGTAQMLGNAECAAIIQVIGAGSGRTFDLDQ 544

Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT---QGT--- 586
            RY KVI+MTDADVDGAHI +LLLT F++ M  LI    ++   PPL RI    +G    
Sbjct: 545 ARYGKVIMMTDADVDGAHIRTLLLTLFFRYMRPLIAAGRVYAAVPPLHRIQVNAKGKTPG 604

Query: 587 KSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645
           +  Y + E+   + L    ++G+  K  I R+KGLGEM A QL ET MD   RTL R+ +
Sbjct: 605 EFRYTYSEDQLHRELAYLARNGRSYKEPIQRYKGLGEMDADQLAETTMDPQHRTLRRIRL 664

Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
             +   L   +D    LMG+    R  FI + A+ +D
Sbjct: 665 VDE-QPLHTAEDVFEVLMGSAVPPRRDFIVQGAARLD 700


>gi|295836120|ref|ZP_06823053.1| DNA gyrase subunit B [Streptomyces sp. SPB74]
 gi|197695215|gb|EDY42148.1| DNA gyrase subunit B [Streptomyces sp. SPB74]
          Length = 707

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 232/687 (33%), Positives = 341/687 (49%), Gaps = 52/687 (7%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY A  + +LEGLE VR RPGMYIG TD + L H   E+IDN++DE + GY + I+V+L
Sbjct: 21  SNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALGGYCDHIDVTL 80

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G + V DNGRGIPV+  PK    S +E+++T LHAGGKF   +Y  SGGLHGVG SV
Sbjct: 81  HADGSVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGASV 139

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK---------------VRNKRGTR 206
           VNALS  L + V R  ++ +  F RG+P                         + + GTR
Sbjct: 140 VNALSARLDIEVDRGGSVHATSFRRGVPGQFKGTGPDGAFEPTTGLRRVKRIPKTRTGTR 199

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + +  D +IF   A      L +  +  A+L   +      +  + E     E E F + 
Sbjct: 200 VRYWADRQIFLKDAKLSLETLHQRARQTAFLVPGLTLVVRDEYGLGEGGAKGE-ESFRYD 258

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTVEWAIAWCE 310
           GG+  + +    ++++      +G+                   +      V+ A+ W  
Sbjct: 259 GGISEFCEYLARDKAVCDVLRLSGQGTFKETVPVLDEHGQMTPTEVVRDLGVDVALRWGT 318

Query: 311 ENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAV 367
                  S+ N I T +GGTH +G   A+TR +       +  R        DD +    
Sbjct: 319 GYETTVRSFVNIIATPKGGTHVTGFERAVTRTVNDVLRGAKLLRVAEDDVVKDDALEGLT 378

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER-- 425
            +++V + EP+F GQTK  L +  A R V N +      +L     +A      V+++  
Sbjct: 379 AVVTVRLAEPQFEGQTKEVLGTSAANRIVANVVAKELKAFLTSTKRDAKAQARAVLDKVV 438

Query: 426 ---SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
                    R+ +    RKTA+    LP KLADC  +    +ELFIVEGDSA G+AK AR
Sbjct: 439 AAARTRIAARQHKEAQRRKTALESSSLPAKLADCRSDDVDRSELFIVEGDSALGTAKLAR 498

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           N   QA+LP+RGKILNV  +    +  N +   ++Q +G  +   +  +  RY K+I++ 
Sbjct: 499 NSEFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVIGAGSGRTFDLDAARYGKIILLV 558

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-----TQGT-KSVYAHDEEH 596
           DADVDGAHI  LLLT F + M  ++E   +F   PPL RI      +G  K VY + +  
Sbjct: 559 DADVDGAHIRCLLLTLFQRYMRPMVEAGRVFAAVPPLHRIELSQPKKGQDKYVYTYSDRE 618

Query: 597 -KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
            ++ +L+  +K+ + K  I R+KGLGEM A QL ET MD   RTL R+ +N     L   
Sbjct: 619 LRETLLDFERKNVRYKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRISMND----LDSA 674

Query: 656 QDSINKLMGTKADERFKFIQERASFID 682
           +   + LMG +   R +FI   A+ +D
Sbjct: 675 ERVFDLLMGNEVAPRKEFITNSAATLD 701


>gi|297162917|gb|ADI12629.1| DNA topoisomerase IV subunit B [Streptomyces bingchenggensis BCW-1]
          Length = 703

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 236/702 (33%), Positives = 344/702 (49%), Gaps = 52/702 (7%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86
             +P   A +      +Y A  + +LEGLE VR RPGMYIG +D + L H   E+IDN++
Sbjct: 2   STLPVPAAGSRPQDGSDYTARHLMVLEGLEAVRKRPGMYIGSSDSRGLMHCLWEIIDNSV 61

Query: 87  DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146
           DE +AG  + IEV L  +G + V DNGRGIPV+N P+    S +EI  T LHAGGKF   
Sbjct: 62  DEALAGACDHIEVVLHDDGSVEVTDNGRGIPVDNEPR-TGLSGVEIAYTKLHAGGKFGGG 120

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------- 199
           +Y  SGGLHGVG SVVNALS  L + V R     +  F RG P +               
Sbjct: 121 SYAASGGLHGVGASVVNALSARLDIEVDRHGRTHAISFRRGTPGTYTGPGPDAPFTPAQG 180

Query: 200 --------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
                   + + GTR+ +  D +IF   A      L +  +  A+L   +      +  +
Sbjct: 181 LRQTTKVPKPRTGTRVRYWADRQIFVKDAKLSLENLHQRARQTAFLVPGLTIVVRDEFGL 240

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KK 295
            E     E E F F GG+  + +    +R +     F+G+                   +
Sbjct: 241 GEGGSKGE-ESFRFDGGISEFCEFLASDRPVCDVLRFSGQGTFKETVPVLDEHGRMTPTE 299

Query: 296 GTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA 354
            T    V+ A+ W         S+ N I T +GGTH +G   A+ + + +     +  R 
Sbjct: 300 VTRELGVDVALRWGTGYDTALRSFVNIIATPKGGTHVAGFEQAVAKTMNEVLRAKKLLRV 359

Query: 355 ISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
                  DD +     +++V + EP+F GQTK  L +  A+R V   +      +L    
Sbjct: 360 AEDDIVKDDALEGLTAVVTVRLAEPQFEGQTKEVLGTSAARRIVNTLISKELKAFLTSTK 419

Query: 413 IEATKLLEWVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
            +A +    V+E+           R+ +    RKTA+    LP KLADC  +    +ELF
Sbjct: 420 RDAAQQARVVLEKAVAAARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDDVDRSELF 479

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           IVEGDSA G+AK ARN   QA+LP+RGKILNV  +    +  N +   ++Q +G  +   
Sbjct: 480 IVEGDSALGTAKLARNSEFQALLPIRGKILNVQKSSVTDMLKNAECGAIIQVIGAGSGRT 539

Query: 528 YREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI----- 582
           +  +  RY K+I+MTDADVDG+HI  LLLT  ++ M  ++E   +F   PPL R+     
Sbjct: 540 FDLDAARYGKIIMMTDADVDGSHIRILLLTLCHRYMRPMVEAGRVFAAVPPLHRVELIQP 599

Query: 583 TQGT-KSVYAHDEEH-KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
            +G  K VY + +   + K+LE   K+ + K  I R+KGLGEM A QL ET MD   RTL
Sbjct: 600 KKGQDKYVYTYSDRELRDKLLEFQSKNIRYKDSIQRYKGLGEMDADQLAETTMDPRHRTL 659

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            R+ ++     L+  +   + LMG +   R +FI   A+ +D
Sbjct: 660 RRINLSD----LEAAERVFDLLMGNEVAPRKEFIANSAATLD 697


>gi|157144341|ref|YP_001451660.1| DNA gyrase subunit B [Citrobacter koseri ATCC BAA-895]
 gi|157081546|gb|ABV11224.1| hypothetical protein CKO_00045 [Citrobacter koseri ATCC BAA-895]
          Length = 804

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 230/574 (40%), Positives = 350/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R N I  Q +  G+P +PL    +  +K GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQRDNKIHRQIYEHGVPQAPLAVTGET-DKTGTMVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLKDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ LE   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALEWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|161505634|ref|YP_001572746.1| DNA gyrase subunit B [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160866981|gb|ABX23604.1| hypothetical protein SARI_03810 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 804

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 229/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVTDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R   I  Q +  G+P +PL       +K GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQRDGKIHRQLYEHGVPQAPLAITGDT-DKTGTMVRFWPSHETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ LE   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALEWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|188991959|ref|YP_001903969.1| DNA topoisomerase IV subunit B [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167733719|emb|CAP51924.1| Topoisomerase IV subunit B [Xanthomonas campestris pv. campestris]
          Length = 673

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 247/685 (36%), Positives = 376/685 (54%), Gaps = 26/685 (3%)

Query: 2   TDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDN-YDASSIRILEGLEPVRM 60
           ++ +  + S   P ++  S    +      +         +  Y+A+ I +L GL+PV+ 
Sbjct: 6   SESNASIVSGARPGTERLSRAKNRPRPHTCASFHVPTRCMNTRYNAADIEVLSGLDPVKR 65

Query: 61  RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           RPGMY   TD    +HL  EVIDN++DE +AG+A  +EV+L  +G   V D+GRG+PV+ 
Sbjct: 66  RPGMY---TDTARPNHLAQEVIDNSVDEALAGHAKQVEVTLYKDGSCEVSDDGRGMPVDM 122

Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
           HP+      +E+ILT LHAGGKF N  Y  SGGLHGVG+SVVNALS ++ + + R+ +  
Sbjct: 123 HPE-EKIPGVELILTRLHAGGKFSNRNYTFSGGLHGVGVSVVNALSTKVELFIKREGSEH 181

Query: 181 SQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
             +F  GI  S LE    V +   GTR+ F  DPK F     F+   L  + ++KA L  
Sbjct: 182 RMEFRDGIAASKLEVVGTVGKKNTGTRLRFWADPKYFDTP-KFNVRALRHLLRAKAVLCP 240

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            +      +          E++ +YF  GL+ YL+ ++ +R L+ +++F G  +K     
Sbjct: 241 GLTVKLHDE-------ATGEQDSWYFEDGLRDYLKGEMADRELLPADLFAGSLKKDTEI- 292

Query: 300 GTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISI 357
             V+WA AW  E      SY N I T + GTH +GLR  LT  ++++ +      R + +
Sbjct: 293 --VDWAAAWVPEGELTQESYVNLIPTAQHGTHVNGLRSGLTDALREFCDFRNLLPRGVKL 350

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             +D+      +LS+ + +P+F+GQTK +L S  A   +E A  D F  YL QN     K
Sbjct: 351 APEDVWDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAAHDAFSLYLNQNVEIGEK 410

Query: 418 LLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           + +  I+R+  RL+   ++++ RK   +   LPGKLADC       TELF+VEGDSAGGS
Sbjct: 411 IAQIAIDRASARLK--TEKQIVRKKVTQGPALPGKLADCISQDLSRTELFLVEGDSAGGS 468

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AKQAR++  QA+LPLRGKILN     S  +  ++++ +L  A+GC          LRY K
Sbjct: 469 AKQARDKDFQAILPLRGKILNTWEVASGSVLASEEVHNLAIAIGCDPGKDDI-TGLRYGK 527

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           V+I+ DAD DG HIA+LL   F Q    L+   H+F+  PPLFR+  G +  YA DEE K
Sbjct: 528 VVILADADSDGLHIATLLTALFLQHFPALVAAGHVFVAMPPLFRVDVGKQVFYALDEEEK 587

Query: 598 QKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
             +L++  +   KG+I ++RFKGLGEM   QL+E+ +  + R L+++ I+    +     
Sbjct: 588 TTLLDKIAREKMKGQISVTRFKGLGEMNPQQLRESTIHPDTRRLVQLTIDDGEQTRSLMD 647

Query: 657 DSINKLMGTKADERFKFIQERASFI 681
                L   +A +R ++++ +    
Sbjct: 648 ML---LAKKRAGDRKQWLETKGDLA 669


>gi|297626463|ref|YP_003688226.1| DNA gyrase subunit B [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296922228|emb|CBL56798.1| DNA gyrase subunit B [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 706

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 230/714 (32%), Positives = 331/714 (46%), Gaps = 58/714 (8%)

Query: 14  PQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKA 73
           P SQ ++ +       P   A     A   Y+A ++ +LEGLE VR RP MYIG TD + 
Sbjct: 2   PDSQSTASQSTAKKSAPGKAA----QAGREYEAKNLLVLEGLEAVRKRPAMYIGSTDTRG 57

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133
           L H   E+IDNA+DE +AG+   I+V L+ +G + V D GRGIPV+  P+  + + +E++
Sbjct: 58  LMHCLWEIIDNAVDEALAGFGRHIDVRLNADGSIHVADAGRGIPVDIEPR-THLTGVEVV 116

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP---- 189
            T LHAGGKF   +Y  +GGLHGVG SVVNALS  L V V R    ++  F RG P    
Sbjct: 117 FTKLHAGGKFGAGSYTATGGLHGVGASVVNALSSRLDVEVDRNGHTWAMSFQRGKPGVFD 176

Query: 190 -----------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLS 238
                          +     +   GTR+T+ PD +IF  +A   A +LL   +  ++L 
Sbjct: 177 GPGPSAGFTPGSGLRKTGRTAKGVTGTRVTYWPDRQIFLKQAQLSAEQLLDRARQTSFLV 236

Query: 239 GRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----- 293
             ++   + D+        P +  F   GG+  ++        +       G        
Sbjct: 237 PGLRITVNDDR-----GEEPVETTFQHEGGISEFVDFLSVGEPITDVLRLQGSDHFVETV 291

Query: 294 -----------KKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRG 341
                           R  V+ A+ W      +  S+ N I T +GGTH  G    L R 
Sbjct: 292 PELDENGAMTPTDVDRRLDVDVAVRWSNNFDTVERSFVNIIATPKGGTHVQGFERGLVRA 351

Query: 342 IKK-YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
                      K    +I DD++     +++V + EP+F GQTK  L +    R V   +
Sbjct: 352 FAAGLEGTRLLKSGEEVIKDDVLEGMTAVVTVRLPEPQFEGQTKEVLGTPPVTRLVARIV 411

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERS----EERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
                 +L             V+E++      RL  R  R    RK A+    +P KL D
Sbjct: 412 ESELTEFLKSTKAATRAQARLVMEKAVNASRTRLAARAHRENQRRKNALESSSMPPKLKD 471

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C       +ELFIVEGDSA G+A +ARN   QA+LP+RGKILNV  A    +  N +   
Sbjct: 472 CRNADGERSELFIVEGDSALGTALRARNSEFQALLPIRGKILNVQKASVGDMLKNAECAS 531

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++Q +G  +   +  +  RY K+I M DAD DGAHI  LL T F++ M  ++E   +F  
Sbjct: 532 IIQVVGAGSGKTFDVDQARYGKIIFMADADSDGAHIRCLLATLFFRYMRPMVEAGRIFSA 591

Query: 576 SPPLFRI-----TQG-TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
            PPL R       +G  K +Y + +   Q+   E  K G    E  R+KGLGEM A QL 
Sbjct: 592 VPPLHRFELTNPKKGMEKYIYTYSDPEYQRKAAELTKKGIHFKEPQRYKGLGEMDADQLA 651

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
           +T M+   R L R+ ++    +     D    LMG     R +FI E A  +D+
Sbjct: 652 DTTMNPRHRLLRRITVDDAAGAA----DVFELLMGNNVAPRKEFIVEGAYQLDE 701


>gi|193216448|ref|YP_001999690.1| topoiosmerase IV subunit B [Mycoplasma arthritidis 158L3-1]
 gi|193001771|gb|ACF06986.1| topoiosmerase IV subunit B [Mycoplasma arthritidis 158L3-1]
          Length = 637

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 233/648 (35%), Positives = 350/648 (54%), Gaps = 32/648 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY+AS +++L+GL+ VR RPGMYIG TD   LHHL  E++DNA+DE +AG+A  I+V+L
Sbjct: 2   SNYEASDLKVLKGLDAVRKRPGMYIGSTDITGLHHLVWEIVDNALDEALAGFATDIKVTL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  + V DNGRGIPV  H     K+ +E++ T LHAGGKFD   Y+ SGGLHGVG SV
Sbjct: 62  KKDDSVIVEDNGRGIPVSKH--GSGKTGVELVFTELHAGGKFDEGVYKTSGGLHGVGSSV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS++L V V R    +   F +   +             GT++ F PD  IF     
Sbjct: 120 VNALSEKLIVKVYRDKKEYKTVFEQDKIIEGTNVVGPTTKH-GTKVQFWPDKTIFKK-TK 177

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F +  + +  +  ++L   +K  ++ ++         E   F    G+K Y++   E ++
Sbjct: 178 FSSDIVKEKLREASFLIPNLKIHFNHEES-------GEAITFEAAEGIKEYIKFVGEGKN 230

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
            ISS  +   T KK      + +          I S+ N + T +GGTHE+  + ALT+ 
Sbjct: 231 FISSIFYAKGTFKKIEMEIALVYTD---NYTENIYSFVNNVKTRDGGTHETAFKSALTKT 287

Query: 342 IKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVEN 398
           I +YA      K   +   DD+    + ++S+ I E   EF GQTK KL +L+A+  VE+
Sbjct: 288 INEYASQHNLLKNKNNFEGDDVREGIIAVVSLKIPESILEFVGQTKDKLGTLEAREAVED 347

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIR---KLRLPGKLAD 455
              + F  YL +N +++ K+L  + +  + R+  R  R   RK   +   K  L GKL  
Sbjct: 348 FFSEKFGFYLNENKLDSDKILNKIKKSYDARMAARTARNEIRKIKNKLENKKILSGKLTP 407

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
                +   ELF+VEGDSAGGSAK  R+R+ QA+LPLRGK++N   A    I +N++I  
Sbjct: 408 AQTKNSSLKELFLVEGDSAGGSAKMGRDRNTQAILPLRGKVINTVKAKLTDILSNEEIAT 467

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++  +G      +  ++ +Y K+IIMTDAD DGAHI  LLLTFFY+ M  LI+   +++ 
Sbjct: 468 IINTIGAGIGQDFNIKNSQYGKIIIMTDADTDGAHIQVLLLTFFYRYMKKLIDAGMVYIA 527

Query: 576 SPPLFRITQGT---KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
            PPL+++T      K  Y  D++  + +  ++        EI R+KGLGEM   QL +T 
Sbjct: 528 LPPLYKLTVKGAKAKHFYVWDDDELRDLTSKY-----SNYEIQRYKGLGEMNPDQLWDTT 582

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           M+   R++LRV IN +      T+ ++  LM    + R  +I     F
Sbjct: 583 MNPETRSILRVRINDEG----LTERNVTTLMSDDINARKLWINTYVDF 626


>gi|306818812|ref|ZP_07452534.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus mulieris
           ATCC 35239]
 gi|304648498|gb|EFM45801.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus mulieris
           ATCC 35239]
          Length = 706

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 236/697 (33%), Positives = 340/697 (48%), Gaps = 63/697 (9%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y A  + +LEGLE VR RP MYIG TD++ L H   E+IDN++DE +AG+ + IEV L
Sbjct: 11  QDYSAHHLSVLEGLEAVRKRPAMYIGSTDQRGLMHCLWEIIDNSVDEALAGFCDHIEVFL 70

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +    V DNGRG+PV+  P     S +E++ T LHAGGKFD+  Y+++GGLHGVG SV
Sbjct: 71  YPDYSAEVRDNGRGVPVDTVP-GTGLSGVEVVYTKLHAGGKFDSGLYKVAGGLHGVGASV 129

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIP--------------------LSPLEKKEKVRN 201
           VNALS  + V V R   I   +F RG P                     S L K  KV  
Sbjct: 130 VNALSARMDVQVDRGGDIHQLQFRRGEPGVFTDHEALSPNNPFAAFEDESKLTKLGKVSK 189

Query: 202 -KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
            + GTR+ F  D +IF     FD   L +  +  ++L   +    +  +        P+ 
Sbjct: 190 SRTGTRVRFWADFQIFPKSTAFDFESLKERARKTSFLVPGLCITVTDLR-----GEEPQS 244

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-----------------KKGTHRGTVE 303
           E +   GG   Y++    ++ +  +    G                    ++      V+
Sbjct: 245 ETYLHKGGTVDYVEFLAPDKGITDTWQLVGSGTFQETVQVLNPKTGHLEPQELERTCEVD 304

Query: 304 WAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK-----RAISI 357
            A+ W      +  SY N I T  GGTH  G   AL + ++   +    K     +   I
Sbjct: 305 IALRWGAGYDTVEQSYVNIIETPVGGTHIQGFESALVKTLRTEIQANSRKLKLGSKDNKI 364

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             +D++     +++V + EPEF GQTK  L S   +  V   + +    +L     +   
Sbjct: 365 EKEDILAGMTAVITVRLPEPEFEGQTKEALGSAAVKPIVSQVVTERLKAFLHSKKRDDKT 424

Query: 418 L----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
                LE ++     RL  R  +E   RK A+    LP KL DC  N    +ELFIVEGD
Sbjct: 425 QVSALLEKIVAEMRSRLSARLSKEITRRKNALETSTLPTKLVDCRSNDVEKSELFIVEGD 484

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           SA G+AK ARN   QA+ P+RGKILNV   G+ ++  N +   ++Q +G  +   +  + 
Sbjct: 485 SALGTAKSARNSEFQALFPIRGKILNVQKTGTAQMLGNAECAAIIQVIGAGSGRTFDLDQ 544

Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT---QGT--- 586
            RY KVI+MTDADVDGAHI +LLLT F++ M  LI    ++   PPL RI    +G    
Sbjct: 545 ARYGKVIMMTDADVDGAHIRTLLLTLFFRYMRPLIAAGRVYAAVPPLHRIQVNAKGKTPG 604

Query: 587 KSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645
           +  Y + E+   + L    ++G+  K  I R+KGLGEM A QL ET MD   RTL R+ +
Sbjct: 605 EFRYTYSEDQLHRELAYLAENGRSYKEPIQRYKGLGEMDADQLAETTMDPQHRTLRRIRL 664

Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
             +       +D    LMG+    R  FI + A+ +D
Sbjct: 665 VDE-QPFHTAEDVFEVLMGSAVPPRRDFIVQGAARLD 700


>gi|182435491|ref|YP_001823210.1| DNA topoisomerase IV subunit B [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178464007|dbj|BAG18527.1| putative B subunit of topoisomerase IV [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 708

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 236/709 (33%), Positives = 345/709 (48%), Gaps = 53/709 (7%)

Query: 20  SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79
                                S NY A  + +LEGLE VR RPGMYIG TD + L H   
Sbjct: 1   MTAETSVPSTAMLTGAGGDRDSSNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLW 60

Query: 80  EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139
           E+IDN++DE + GY + IEV L  +  + V DNGRGIPV+  PK    S +E+++T LHA
Sbjct: 61  EIIDNSVDEALGGYCDQIEVILHDDASVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHA 119

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKF   +Y  SGGLHGVG SVVNALS  L V V R +   S  F RG+P    E+    
Sbjct: 120 GGKFGGGSYAASGGLHGVGASVVNALSARLDVEVDRNSATHSISFRRGVPGMFTEQGPDS 179

Query: 200 ---------------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244
                          + + GTR+ +  D +IF   A  +   L +  +  A+L   +   
Sbjct: 180 PFDPANGLRKGKRVPKTRTGTRVRYWADRQIFLKDARLNLDTLHQRARQTAFLVPGLTII 239

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------- 293
              ++ +  +      E F F GG+  + +   +++++   +  +G              
Sbjct: 240 VRDERGLDGEGKTE--ETFRFDGGISEFCEYLAQDKAVCDVQRLSGTGTFKETVPVLDDR 297

Query: 294 -----KKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
                 + T    V+ A+ W         S+ N I T +GGTH +G   +LT+ + +   
Sbjct: 298 GHMTATEVTRELAVDIALRWGTGYDTTVRSFVNIIATPKGGTHVTGFERSLTKTVNEALR 357

Query: 348 LTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
             +  R        DD +     +++V + EP+F GQTK  L +  A R V   +     
Sbjct: 358 SAKMLRVAEDDIVKDDALEGLTAVVTVRLAEPQFEGQTKEVLGTSAANRIVAGVVAKELK 417

Query: 406 HYLVQNPIEATKLLEWVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
            +L     +A      V+E+           R+ +    RKTA+    LP KLADC  + 
Sbjct: 418 AFLTSTKRDAKAQARAVLEKAVAAARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDD 477

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +ELFIVEGDSA G+AK ARN   QA+LP+RGKILNV  +    +  N +   ++Q +
Sbjct: 478 VERSELFIVEGDSALGTAKLARNSEFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVI 537

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           G  +   +  +  RY K++++ DADVDGAHI  LLLT F + M  ++E   +F   PPL 
Sbjct: 538 GAGSGRTFDIDAARYGKIVLLVDADVDGAHIRCLLLTLFQRYMRPMVEAGRVFAAVPPLH 597

Query: 581 RI-----TQGT-KSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAM 633
           RI      +G  K VY + +   ++ L EF +K+ + K  I R+KGLGEM A QL ET M
Sbjct: 598 RIELVQPKKGQDKYVYTYSDNELRQTLLEFQRKNVRIKESIQRYKGLGEMDADQLAETTM 657

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           D   RTL R+ I      L+ ++   + LMG +   R +FI   A+ +D
Sbjct: 658 DPRHRTLRRINIGD----LESSEQVFDLLMGNEVAPRKEFITSSAATLD 702


>gi|260595833|ref|YP_003208404.1| DNA gyrase subunit B [Cronobacter turicensis z3032]
 gi|260215010|emb|CBA26674.1| DNA gyrase subunit B [Cronobacter turicensis z3032]
          Length = 804

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 229/574 (39%), Positives = 350/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVSDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+  I  Q +  G+P +PL        + GT++ F P  + F + 
Sbjct: 121 SVVNALSQKLELVIRREGKIHQQTYVHGVPQAPLAVTGDT-EQTGTQVRFWPSHETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++        +++ F++ GG+K +++   +N
Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLVDKRD-------GKQDHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLAEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPAHSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|170723865|ref|YP_001751553.1| DNA topoisomerase IV subunit B [Pseudomonas putida W619]
 gi|169761868|gb|ACA75184.1| DNA topoisomerase IV, B subunit [Pseudomonas putida W619]
          Length = 634

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 247/655 (37%), Positives = 364/655 (55%), Gaps = 27/655 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            AN SAS  Y+A +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A
Sbjct: 1   MANPSASA-YNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHA 56

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             ++V L  +  L V D+GRG+PV+ HP+    S +E+ILT LHAGGKF N  Y+ SGGL
Sbjct: 57  RSVQVILHADHSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213
           HGVGISVVNALS ++ V V R    +   F+ G   S LE    V +   GT + F PDP
Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYQMTFADGFKASELEVVGTVGKRNTGTSVYFSPDP 175

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     F  +RL  + ++KA L   +   +             EK E+++  GL++YL
Sbjct: 176 KYFDSP-KFSISRLKHVLKAKAVLCPGLLVSFEDK-------ASGEKVEWHYEDGLRSYL 227

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHE 331
              +     +  E F G        +  V+WA+ W  E  +    SY N I T +GGTH 
Sbjct: 228 VDSVSEFQRLPDEPFCGSLAGN---KEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHV 284

Query: 332 SGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           +GLR  L   ++++ E      R + +  +D+      +LS+ ++EP+F+GQTK +L S 
Sbjct: 285 NGLRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERITFVLSMKMQEPQFSGQTKERLSSR 344

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
           +A   V   ++D F  +L  +P    +L E  I  +  RL+    ++V RK   +   LP
Sbjct: 345 EAAAFVSGVVKDAFSLWLNAHPELGMQLAELAISNAGRRLK--ASKKVERKRVTQGPALP 402

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC+       ELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN       ++  +
Sbjct: 403 GKLADCAGQDPMRAELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLAS 462

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           Q++ ++  A+G    +      LRY K+ I+ DAD DG HIA+LL   F Q    L+E  
Sbjct: 463 QEVHNIAVAIGVDPGAADL-SQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVEAG 521

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLK 629
           H+++  PPL+RI  G +  YA DE  +  IL+    +  +GK +++RFKGLGEM   QL+
Sbjct: 522 HVYVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLR 581

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           ET MD N R L+++ ++    + +        L   +A +R  +++ + +  + +
Sbjct: 582 ETTMDPNTRRLVQLTLDDLQGTTEIMDML---LAKKRAGDRKNWLETKGNLAEVL 633


>gi|283836132|ref|ZP_06355873.1| hypothetical protein CIT292_10552 [Citrobacter youngae ATCC 29220]
 gi|291068320|gb|EFE06429.1| DNA gyrase, B subunit [Citrobacter youngae ATCC 29220]
          Length = 804

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 227/574 (39%), Positives = 349/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVTDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+  +  Q +  G+P +PL    +     GT++ F P  + F + 
Sbjct: 121 SVVNALSQKLELVIRREGKVHQQTYVHGVPQAPLAVTGET-EVTGTQVRFWPSHETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ LE  +K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALEWLQKESRRGLAIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|296100375|ref|YP_003610521.1| DNA gyrase subunit B [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295054834|gb|ADF59572.1| DNA gyrase subunit B [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 803

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 227/566 (40%), Positives = 345/566 (60%), Gaps = 18/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+  I  Q +  G+P +PL          GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYQHGVPEAPLAVTGDTEK-TGTMVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL +NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLSDYLQENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  D++   + 
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDDAMDQY 555



 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ LE   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 718 FEQALEWLVKESRRGLSIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAI----AAD 773

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 774 QLFTTLMGDAVEPRRAFIEENALKAANID 802


>gi|299768369|ref|YP_003730395.1| DNA topoisomerase IV subunit B [Acinetobacter sp. DR1]
 gi|298698457|gb|ADI89022.1| DNA topoisomerase IV subunit B [Acinetobacter sp. DR1]
          Length = 627

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 255/645 (39%), Positives = 373/645 (57%), Gaps = 28/645 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y A S+ +L GL+PVR RPGMY   TD    +HL  EVIDNA+DE +AG+A+ I V++ 
Sbjct: 3   QYTAQSLEVLSGLDPVRRRPGMY---TDTTRPNHLAQEVIDNAVDEALAGHADKICVTVY 59

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G L+V DNGRG+PV+ HP++  +S +EIILT LHAGGKF    Y+ SGGLHGVGISVV
Sbjct: 60  KDGSLSVEDNGRGMPVDIHPEY-GQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISVV 118

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGDKA 220
           NALS  + V V RQ  ++   F +G P++PL   E    +   GT + F P+ K F    
Sbjct: 119 NALSTRVEVEVQRQGNLYQMAFEQGEPVAPLAVLEGKAPKRATGTTVHFWPEAKYFDSP- 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L    ++KA L+  +K  +             EK E+ F  GL  YL  +L++R
Sbjct: 178 KFALKALKHNLKAKAVLAAGLKIIYIDQ-------INDEKIEWQFENGLVDYLMDELQDR 230

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVAL 338
            ++ +  F    +     R   E+AI W  E  E    SY N I T +GGTH +GLR  +
Sbjct: 231 EILPNPAFVSSGQAD---RAACEFAICWNVEGGEQVQESYVNLIPTAQGGTHVNGLRSGV 287

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           T  ++++ EL     R + + ++D+      ILS+  +EP+F+GQTK +L S +A   V 
Sbjct: 288 TEALREFCELRNLLPRNLKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREASNIVL 347

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
           N  +D F  +L Q+   A +L E  I ++  RL+    ++V RK  +    LPGKLADC 
Sbjct: 348 NIAKDAFSLWLNQHAEIAMQLAEMAISKAGRRLK--AAKKVERKKIVSGPALPGKLADCV 405

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +ELFIVEGDSAGGSAKQAR+++ QA++P+RGKILN     S+++  +Q++ D+ 
Sbjct: 406 GQTREDSELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIA 465

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S     +LRY K+ I+ DAD DG HIA+LL   F +    L+E+ HL++  P
Sbjct: 466 IAIGVDPGSDDL-SELRYGKICILADADSDGLHIATLLCALFVKHFPTLVEEGHLYVAMP 524

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PLFRI  G    YA D++  + IL+  K  G    +I+RFKGLGEM A QL+ET MD N 
Sbjct: 525 PLFRIDIGKDVHYALDDDELETILKNIK--GNRNPQITRFKGLGEMNAIQLRETTMDPNT 582

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           R L++++++    +          L   ++ +R ++++++ +  D
Sbjct: 583 RRLVQLDLDDAHFTAGLLDKL---LAKKRSADRKQWLEQKGNLAD 624


>gi|16762490|ref|NP_458107.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|16767120|ref|NP_462735.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29143978|ref|NP_807320.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|161616952|ref|YP_001590917.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|167548876|ref|ZP_02342635.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|167992428|ref|ZP_02573526.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168233389|ref|ZP_02658447.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168235474|ref|ZP_02660532.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168242054|ref|ZP_02666986.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168260381|ref|ZP_02682354.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|168464835|ref|ZP_02698727.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|168818305|ref|ZP_02830305.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194442844|ref|YP_002043085.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194449732|ref|YP_002047868.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194472695|ref|ZP_03078679.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194737072|ref|YP_002116779.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197262274|ref|ZP_03162348.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|198244047|ref|YP_002217785.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|200387101|ref|ZP_03213713.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204928757|ref|ZP_03219956.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205354578|ref|YP_002228379.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207859061|ref|YP_002245712.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|213424954|ref|ZP_03357704.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhi str. E02-1180]
 gi|224585634|ref|YP_002639433.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|238913088|ref|ZP_04656925.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|289826402|ref|ZP_06545514.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|61225454|sp|P0A2I3|GYRB_SALTY RecName: Full=DNA gyrase subunit B
 gi|61225456|sp|P0A2I4|GYRB_SALTI RecName: Full=DNA gyrase subunit B
 gi|25292820|pir||AD0958 DNA gyrase chain B [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16422408|gb|AAL22694.1| DNA gyrase, subunit B [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|16504795|emb|CAD03160.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29139614|gb|AAO71180.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|149693011|emb|CAK55540.1| DNA gyrase subunit [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|149693013|emb|CAK55541.1| DNA gyrase subunit [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|161366316|gb|ABX70084.1| hypothetical protein SPAB_04773 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194401507|gb|ACF61729.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194408036|gb|ACF68255.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194459059|gb|EDX47898.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194712574|gb|ACF91795.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195632426|gb|EDX50910.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|197240529|gb|EDY23149.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197291517|gb|EDY30869.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197938563|gb|ACH75896.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|199604199|gb|EDZ02744.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204322190|gb|EDZ07388.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205274359|emb|CAR39384.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205325567|gb|EDZ13406.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205329403|gb|EDZ16167.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205332584|gb|EDZ19348.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205338996|gb|EDZ25760.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205344661|gb|EDZ31425.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205350152|gb|EDZ36783.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|206710864|emb|CAR35228.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224470162|gb|ACN47992.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261248976|emb|CBG26833.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267996120|gb|ACY91005.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301160368|emb|CBW19893.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312914965|dbj|BAJ38939.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|320088256|emb|CBY98018.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|321225553|gb|EFX50608.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322617252|gb|EFY14157.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322619060|gb|EFY15946.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625127|gb|EFY21955.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322630178|gb|EFY26949.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322634396|gb|EFY31130.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322635281|gb|EFY31996.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322642908|gb|EFY39491.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322647625|gb|EFY44112.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322650569|gb|EFY46976.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322656405|gb|EFY52697.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322661585|gb|EFY57808.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322661666|gb|EFY57885.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322668220|gb|EFY64378.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322672851|gb|EFY68959.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322674968|gb|EFY71054.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322683658|gb|EFY79671.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322687734|gb|EFY83703.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323132196|gb|ADX19626.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323192051|gb|EFZ77286.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323200533|gb|EFZ85611.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323204959|gb|EFZ89944.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323206702|gb|EFZ91659.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323211774|gb|EFZ96607.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323218636|gb|EGA03343.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323220037|gb|EGA04507.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323224807|gb|EGA09072.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323232484|gb|EGA16586.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323235259|gb|EGA19344.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323241047|gb|EGA25084.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323241403|gb|EGA25435.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323248634|gb|EGA32564.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323252067|gb|EGA35927.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323258629|gb|EGA42292.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323262340|gb|EGA45898.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323268176|gb|EGA51652.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323270590|gb|EGA54035.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
 gi|326625571|gb|EGE31916.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
 gi|326629714|gb|EGE36057.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 804

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 229/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVTDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R   I  Q +  G+P +PL       +K GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWPSHETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ LE   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALEWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|311898776|dbj|BAJ31184.1| putative type II topoisomerase [Kitasatospora setae KM-6054]
          Length = 706

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 236/703 (33%), Positives = 339/703 (48%), Gaps = 53/703 (7%)

Query: 26  SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNA 85
           SGE     +        +Y A  + +LEGLE VR RPGMYIG TD + L H   E+IDN+
Sbjct: 5   SGEKTGPSSLVTGEGGSDYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNS 64

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE + G+ + I+V L  +G + V DNGRGIPV+  PK    S +E+++T LHAGGKF  
Sbjct: 65  VDEALGGFCDRIDVLLHQDGSVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHAGGKFGG 123

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG--------------IPLS 191
            +Y  SGGLHGVG SVVNALS  L V V R     +  F RG               P S
Sbjct: 124 GSYAASGGLHGVGASVVNALSARLDVEVDRSGATHAISFRRGTPGAYAGEGPDAAFEPGS 183

Query: 192 PLEKKEK-VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            + K+ K  + + GTRI +  D +IF   A      L    +  A+L   +      ++ 
Sbjct: 184 GMTKRGKFAKTRTGTRIRYWADRQIFLKDAKLSLESLHSRARQTAFLVPGLTIVVRDERL 243

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------K 294
              +      E F + GG+  + +    +R +       G+                   
Sbjct: 244 TESEQVAE--ETFRYDGGISEFCEFLAPDRPISDVLRLRGEGTFKETVPVLDELGHMTPT 301

Query: 295 KGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR 353
           + T    V+ A+ W         S+ N I T +GGTH +G    L + + +     +  R
Sbjct: 302 EVTRELGVDIALRWGAGYDTTQRSFVNIISTPKGGTHVTGFERQLAKTVNEALRAAKLLR 361

Query: 354 AISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
                   DD       +++V + EP+F GQTK  L +  A R V   +      +L   
Sbjct: 362 VAEDDITKDDAQEGLTAVITVRLAEPQFEGQTKEVLGTSAANRIVAAVVAKELKAFLTSA 421

Query: 412 PIEATKLLEWVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
             +       V+E+           R+ +    RKTA+    LP KLADC  +    +EL
Sbjct: 422 KKDEKLQARAVLEKVVAAARTRVAARQHKEAQRRKTALETSSLPAKLADCRSDDVERSEL 481

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS 526
           FIVEGDSA G+AK ARN   QA+LP+RGKILNV  A    +  N +   ++Q +G  +  
Sbjct: 482 FIVEGDSALGTAKLARNSEFQALLPIRGKILNVQKASVSDMLKNAECASIIQVIGAGSGR 541

Query: 527 QYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI---- 582
            +  +  RY KVI M DADVDG+HI +LLLT F++ M  ++EQ  +F   PPL RI    
Sbjct: 542 TFDIDQARYGKVIFMADADVDGSHIRTLLLTLFHRYMRPMVEQGRVFAAVPPLHRIELTN 601

Query: 583 -TQGT-KSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRT 639
             +G  K  Y + +   ++ L +F+  G + K  I R+KGLGEM A QL ET MD   R 
Sbjct: 602 PKRGQEKYHYTYSDAELRRTLLQFQGKGLRWKDPIQRYKGLGEMDADQLAETTMDPRFRI 661

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           L R+ +      L+  + + + LMG     R +FI + A+ +D
Sbjct: 662 LRRINLGD----LESAEKTFDLLMGNDVAPRREFIVDSAATLD 700


>gi|331269786|ref|YP_004396278.1| DNA topoisomerase [Clostridium botulinum BKT015925]
 gi|329126336|gb|AEB76281.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium botulinum
           BKT015925]
          Length = 652

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 219/659 (33%), Positives = 345/659 (52%), Gaps = 36/659 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           ++YD + +  LE LEPVR+RPGMYIG T  K LHH   E++DN++DE+  GY + + + L
Sbjct: 10  NSYDVTDLTSLEKLEPVRVRPGMYIGSTGTKGLHHCIWEILDNSIDEIANGYGDKVTLIL 69

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +  +T++DNGRGIP   HP    KS +E++ T LH GGKF+N  Y+ SGGLHGVG +V
Sbjct: 70  NEDKSVTIIDNGRGIPTGIHP-IKKKSGVEMVFTELHTGGKFNNKNYKTSGGLHGVGAAV 128

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTRITFR 210
           VNALS+ + V V ++  I+ Q+F             G P++PLE      +  GTRITF+
Sbjct: 129 VNALSEWVEVEVYQKGHIYKQRFEYAEDKSLNKKMPGTPITPLEIIGDTND-TGTRITFK 187

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PD ++F     F    + +  Q  A+ +  +      +++            +    GL 
Sbjct: 188 PDKEVFST-TDFKFEVIDERLQELAFQNKGITLVIKDERKEETVEKE-----YRSERGLL 241

Query: 271 TYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
            +++   E+++ I  E    + EK+  + +   E  I + + +   I SY N I T E G
Sbjct: 242 DFIEYLNESKTPIHKEPLIFEGEKEVNSIKVYSEVCIQFTDSSTENIASYVNNIPTTESG 301

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           THE+G +  +TR  K++A       ++      DDL      IL V I  P F GQTKTK
Sbjct: 302 THETGFKTGMTRAFKEWARKLNIVKEKDRGFEGDDLREGMTAILRVKISNPIFEGQTKTK 361

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           L + +A   +          ++  N   AT+++   +  +  R + +K  +   +K    
Sbjct: 362 LGNNEAYTVMNELAYTKIGEWIEDNKEIATQIINNAVSAAARRDKIKKINDAEKKKIGKG 421

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              L GK++ C+   +   E  +VEGDSAGGSAKQAR+R  Q ++P +GKI+N      E
Sbjct: 422 AAPLAGKVSICTLKKSDICEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQRLE 481

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
            +  ++++     A+G      Y EEDL+Y K+II++DADVDG HI +L +T+ Y+ M  
Sbjct: 482 NVLASEELKLFNTAIGTGVLENYNEEDLKYNKIIILSDADVDGYHIRTLWITYIYRYMKS 541

Query: 566 LIEQKHLFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
           LI   HL++  PPL+++ +  K      YA+ ++  +   +E  K       I R+KGLG
Sbjct: 542 LITNGHLYIALPPLYKVYKNAKNGEVRRYAYSDDELELAKKEIGKGAL----IQRYKGLG 597

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           EM   QL +T ++   RTL ++ I          +  I+ LMG   + R  ++ + A F
Sbjct: 598 EMNPDQLWDTTLNPETRTLQQITIED----AAKAEKMISLLMGDVVEPRRNYMYKYAEF 652


>gi|170766845|ref|ZP_02901298.1| DNA gyrase, B subunit [Escherichia albertii TW07627]
 gi|170124283|gb|EDS93214.1| DNA gyrase, B subunit [Escherichia albertii TW07627]
          Length = 804

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 230/574 (40%), Positives = 349/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+  I  Q +  G+P +PL       +K GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLKDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|197250721|ref|YP_002148773.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197214424|gb|ACH51821.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
          Length = 804

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 229/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVTDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R   I  Q +  G+P +PL       +K GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWPSHETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ LE   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALEWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|311277336|ref|YP_003939567.1| DNA gyrase, B subunit [Enterobacter cloacae SCF1]
 gi|308746531|gb|ADO46283.1| DNA gyrase, B subunit [Enterobacter cloacae SCF1]
          Length = 804

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 229/566 (40%), Positives = 349/566 (61%), Gaps = 18/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVTDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+  I  Q ++ G+P +PL       +K GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQREGKIHRQLYTHGVPQAPLAVTGDT-DKTGTMVRFWPSHETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLKDKRDNKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  D+E   + 
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQY 555



 Score =  136 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|226953356|ref|ZP_03823820.1| topoisomerase IV subunit B [Acinetobacter sp. ATCC 27244]
 gi|226835894|gb|EEH68277.1| topoisomerase IV subunit B [Acinetobacter sp. ATCC 27244]
          Length = 627

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 258/645 (40%), Positives = 375/645 (58%), Gaps = 28/645 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y A S+ +L GL+PVR RPGMY   TD    +HL  EVIDNA+DE +AG+AN + V++ 
Sbjct: 3   QYTAQSLEVLSGLDPVRRRPGMY---TDTSRPNHLAQEVIDNAVDEALAGHANQVTVTVY 59

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G L+V DNGRG+PV+ HP++  +S +EIILT LHAGGKF    Y+ SGGLHGVGISVV
Sbjct: 60  EDGSLSVEDNGRGMPVDIHPEY-GQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISVV 118

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGDKA 220
           NALS  + V V R   ++   F +G P++PL   E    +   GT + F P+ K F    
Sbjct: 119 NALSTRVEVAVQRHGNLYQMAFEQGEPVAPLSVLEGKVAKRATGTTVRFWPEAKYFDSP- 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L    ++KA L+  +K  +  DK   EK        + F  GL  YL  +LE+R
Sbjct: 178 KFALKALKHNLKAKAVLAAGLKIIY-DDKINNEKIE------WQFENGLVDYLMDELEDR 230

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVAL 338
            ++ +  F    + +   R   E+AI W  E  E    SY N I T +GGTH +GLR  +
Sbjct: 231 EILPAPAFVSSGQAE---RAACEFAICWNVEGGEQIQESYVNLIPTAQGGTHVNGLRSGV 287

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           T  ++++ EL     R + + ++D+      ILS+  +EP+F+GQTK +L S +A   V 
Sbjct: 288 TEALREFCELRNLLPRNMKLSAEDVWDGVNFILSLKFQEPQFSGQTKERLSSREASNIVL 347

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
           N  +D F  +L Q+   AT+L E  I ++  RL+    ++V RK  +    LPGKLADC 
Sbjct: 348 NIAKDAFALWLNQHAEIATQLAEMAIAKAGRRLK--AAKKVERKKIVAGPALPGKLADCV 405

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +ELFIVEGDSAGGSAKQAR+++ QA++P+RGKILN     S+++  +Q++ D+ 
Sbjct: 406 GLTREDSELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIA 465

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S     +LRY K+ I+ DAD DG HIA+LL   F +    L+E+ HL++  P
Sbjct: 466 IAIGVDPGSDDL-SELRYGKICILADADSDGLHIATLLCALFVKHFPTLVEEGHLYVAMP 524

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G    YA D++  + IL+  K  G    +I+RFKGLGEM ASQL+ET MD N 
Sbjct: 525 PLYRIDIGKDVHYALDDDELEAILKNIK--GNKNPQITRFKGLGEMNASQLRETTMDPNT 582

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           R L++++++    +          L   +A +R  +++++ +  D
Sbjct: 583 RRLVQLDLDDAHLTAGLLDKL---LAKKRAADRKHWLEQKGNLAD 624


>gi|307105660|gb|EFN53908.1| hypothetical protein CHLNCDRAFT_48978 [Chlorella variabilis]
          Length = 663

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 255/687 (37%), Positives = 366/687 (53%), Gaps = 53/687 (7%)

Query: 26  SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNA 85
            G+  D+ A     AS +Y A  I++L+GLEPVR RPGMYIG T ++ LHHL  E++DNA
Sbjct: 2   PGQTADADAPEAAEASTSYGAQQIQVLQGLEPVRKRPGMYIGSTGQRGLHHLVYEILDNA 61

Query: 86  MDEVIAGYANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144
           +DEV AG+A  + V L+ + G++T+ DNGRGIP + HP    KS LE +LT LHAGGKF 
Sbjct: 62  IDEVQAGFATEVHVELNLDTGWVTISDNGRGIPTDVHP-VTGKSALETVLTVLHAGGKFG 120

Query: 145 NST--YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN- 201
             +  Y +SGGLHGVG+SVVNALSDEL V+V R  + FSQ+FSRG+  SPL +       
Sbjct: 121 GDSSGYSVSGGLHGVGLSVVNALSDELEVSVWRGRSQFSQRFSRGVAQSPLVEAPAAAGA 180

Query: 202 -KRGTRITFRPDPKIF-------------GDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247
            KRGTR+ F  D  IF                A FD   +    +  A+L+ R    +  
Sbjct: 181 PKRGTRVRFIYDDTIFSKTHTSPRPPLLPHCSATFDPDTIRSRLRELAFLNSRATIYFRA 240

Query: 248 DKEIAE----KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
               +         P+ E F++ GGL  Y++    ++  I   +   K            
Sbjct: 241 GNGSSNGAAAAEAEPDWEVFHYSGGLAEYVRFLNRDKVPIHEPLCFSK------------ 288

Query: 304 WAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDD 361
              +       I  + N+I T +GGTH  G + ALTR +       +  +    ++  + 
Sbjct: 289 -QASGLRRGDTIIGFVNSIKTIDGGTHIDGTKAALTRTVNSLGRKLKAIKEGESNLAGEY 347

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
           +      ++SV +  PEF GQTKT+L + + +R VE  +       L   P     +L  
Sbjct: 348 IREGLGAVVSVKVPNPEFEGQTKTRLGNPEVRRIVEGVVSSAVGEALEMEPTTFNTILAK 407

Query: 422 VIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
            ++  +     +K RE V RK+ + K  LPGKLADCS      TE+F+VEGDSAGGS KQ
Sbjct: 408 AMQAFKAAEAAKKARELVRRKSVLTKSTLPGKLADCSSTNRAETEIFLVEGDSAGGSTKQ 467

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           AR+R  QAVLPLRGKILN  S    K+  N +I +L+  LG   + +    +LRY K+II
Sbjct: 468 ARDRRYQAVLPLRGKILNDDS----KLYKNNEIANLIVGLGLGLKGED-AVNLRYGKIII 522

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKI 600
           +TDADVDGAHI +LLLTF ++    + E+ H+++  PPL+++  G ++ Y + EE  +  
Sbjct: 523 LTDADVDGAHIRTLLLTFLFRYQRAIFEKGHVYVGVPPLYKLDVGRRAQYCYTEEELKAA 582

Query: 601 LEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660
           L E          + RFKGLGEM+  QL  T ++   RTL ++ I+       +      
Sbjct: 583 LAELAPC---SYTMQRFKGLGEMMPEQLWSTTLNPETRTLRKLTIDD----AAEASHMFA 635

Query: 661 KLMGTKADERFKFIQERASF--IDDVG 685
            LMG K   R + I+   S   ++++ 
Sbjct: 636 LLMGDKVGPRRELIERHGSRLALEELD 662


>gi|147108|gb|AAA24298.1| topoisomerase IV subunit [Escherichia coli str. K-12 substr. W3110]
          Length = 601

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 239/614 (38%), Positives = 347/614 (56%), Gaps = 23/614 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R   +++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL  + ++KA L   V+  +  +    E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G           V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A  L E  I  ++ R+R    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  
Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI  G +  YA  EE K+ +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N
Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582

Query: 637 KRTLLRVEINKDLN 650
            R L+++ I+ + +
Sbjct: 583 TRRLVQLTIDDEDD 596


>gi|169634797|ref|YP_001708533.1| DNA topoisomerase IV subunit B [Acinetobacter baumannii SDF]
 gi|169153589|emb|CAP02766.1| topoisomerase IV subunit B [Acinetobacter baumannii]
          Length = 627

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 258/645 (40%), Positives = 374/645 (57%), Gaps = 28/645 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y A S+ +L GL+PVR RPGMY   TD    +HL  EVIDNA+DE +AG+A+ I V++ 
Sbjct: 3   QYTAQSLEVLSGLDPVRRRPGMY---TDTSRPNHLAQEVIDNAVDEALAGHADKICVTVY 59

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G L+V DNGRG+PV+ HP++  +S +EIILT LHAGGKF    Y+ SGGLHGVGISVV
Sbjct: 60  KDGSLSVEDNGRGMPVDIHPEY-GQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISVV 118

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGDKA 220
           NALS  + V V RQ  ++   F +G P++PL   E    +   GT + F P+ K F    
Sbjct: 119 NALSTRVEVEVQRQGNLYQMAFEQGEPVAPLAVLEGKAPKRATGTTVRFWPEAKYFDSP- 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L    ++KA L+  +K  +             EK E+ F  GL  YL  +L++R
Sbjct: 178 KFALKALKHNLKAKAVLAAGLKITYIDQ-------INDEKIEWQFENGLVDYLMDELQDR 230

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVAL 338
            ++ +  F    +     R   E+AI W  E  E    SY N I T +GGTH +GLR  +
Sbjct: 231 EILPNPAFVSSGQAD---RAACEFAICWNVEGGEQVQESYVNLIPTAQGGTHVNGLRSGV 287

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           T  ++++ EL     R + + ++D+      ILS+  +EP+F+GQTK +L S +A   V 
Sbjct: 288 TEALREFCELRNLLPRNLKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREAANIVL 347

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
           N  +D F  +L Q+   A +L E VI ++  RL+    ++V RK  +    LPGKLADC 
Sbjct: 348 NIAKDAFALWLNQHAEIAMQLAEMVISKAGRRLK--AAKKVERKKIVSGPALPGKLADCV 405

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +ELFIVEGDSAGGSAKQAR+++ QA++P+RGKILN     S+++  +Q++ D+ 
Sbjct: 406 GQTREESELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIA 465

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S     +LRY K+ I+ DAD DG HIA+LL   F +    L+E+ HL++  P
Sbjct: 466 IAIGVDPGSDDL-SELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAMP 524

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PLFRI  G    YA D+E  + IL+  K  G    +I+RFKGLGEM A QL+ET MD N 
Sbjct: 525 PLFRIDIGKDVHYALDDEELETILKNVK--GNKNPQITRFKGLGEMNAIQLRETTMDPNT 582

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           R L++++++    +          L   +A +R ++++++ +  D
Sbjct: 583 RRLVQLDLDDAHLTAGLLDKL---LAKKRAADRKQWLEQKGNLAD 624


>gi|255526781|ref|ZP_05393681.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium carboxidivorans
           P7]
 gi|255509509|gb|EET85849.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium carboxidivorans
           P7]
          Length = 653

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 213/659 (32%), Positives = 339/659 (51%), Gaps = 36/659 (5%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YD +++  LE LEPVR+RPGMYIG T  K LHH   E++DN++DE+  G+ +   V L+ 
Sbjct: 11  YDVTALTSLEKLEPVRVRPGMYIGSTGSKGLHHCIWEILDNSIDEISNGFGDKAIVILNK 70

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +  +T++DNGRGIP   HP    KS +E++ T LH GGKF+N  Y+ SGGLHGVG +VVN
Sbjct: 71  DKSVTIIDNGRGIPTGIHP-VKKKSGVEMVFTELHTGGKFNNDVYKTSGGLHGVGAAVVN 129

Query: 164 ALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTRITFRPD 212
           ALS  + V + +   I++Q+F             G P++ L+     +   GT++TF PD
Sbjct: 130 ALSKWVVVEIKQNGHIYTQRFEYAYDKSLKRDMPGTPVTALKIAGNTKE-TGTKVTFLPD 188

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
             +F +   F    + +  Q  A+ +  +       +E            ++   GL  +
Sbjct: 189 KDVFSNT-EFKFDVIDERLQELAFQNKGITLKIIDKREDEVVEKE-----YHSERGLLDF 242

Query: 273 LQTKLENRSLISSEIFTGKTEKK--GTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330
           ++   E+++ + +     + E++  G    +             I SY N I T E GTH
Sbjct: 243 IEYLNESKTALHTPPILFEGEREVNGISMYSEVCVQFTDSTTEYIASYVNNIPTTESGTH 302

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           ESG +  +TR  K++ +      ++      DDL      I+ + I  P F GQTKTKL 
Sbjct: 303 ESGFKAGMTRAFKEWTKKLNLLKEKDKEFEGDDLREGMTAIVRIKITNPIFEGQTKTKLG 362

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447
           + +A   + +     F  ++  N   A+ ++   I+ +  R + +K  E   +K      
Sbjct: 363 NTEAYTMMNDLAYTKFSEWIEDNKDTASSIINNAIDAAARREKIKKINEAEKKKIGKGTA 422

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            L GK+A C+      +E  +VEGDSAGGSAKQAR+R  Q ++P +GKI+N      E +
Sbjct: 423 PLAGKIAVCTLKDPSFSEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKLENV 482

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             ++++     A+G      Y+E+DL+Y K+IIM+DADVDG HI +L +T+ Y+ M  +I
Sbjct: 483 LGSEELKIFNTAIGTGVLQNYKEQDLKYNKIIIMSDADVDGYHIRTLWMTYIYRYMRQII 542

Query: 568 EQKHLFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
              HL++  PPL+++ +  K      YA+ +E  +K  ++  K       I R+KGLGEM
Sbjct: 543 SNGHLYIALPPLYKVYKQNKNKEIVRYAYSDEELEKEKKQVGKGAL----IQRYKGLGEM 598

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
              QL ET ++   RTL ++ I          +  ++ LMG     R  ++ + A F D
Sbjct: 599 NPDQLWETTLNPETRTLQQITIED----AAKAEKMVSLLMGDVVAPRKNYMYKYAVFND 653


>gi|529464|gb|AAA91333.1| topoisomerase II subunit B [Mycoplasma gallisepticum]
          Length = 633

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 238/647 (36%), Positives = 355/647 (54%), Gaps = 28/647 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY+   I++L+GLEPVR RPGMYIG TD + LHHL  E+ DNA+DE + G AN IEV  
Sbjct: 3   SNYNEKHIKVLKGLEPVRKRPGMYIGSTDTRGLHHLVWELFDNAVDEALNGSANKIEVVH 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G + V DNGRGIPV  +    N ST++ + T LHAGGKFD+  Y++SGGLHGVG SV
Sbjct: 63  KKDGSIIVTDNGRGIPVGKNL-ATNLSTVDTVYTVLHAGGKFDDQAYKVSGGLHGVGASV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS +L VTV R   ++   +  G  +    KK     K GT I F PDP IF +   
Sbjct: 122 VNALSRKLIVTVHRDGGMYESIYQDGGKIIQPLKKMGSSTKHGTIIQFWPDPTIFKN-IQ 180

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F+   + +     ++L   +K  +  +            + F    G+  YL+   EN+ 
Sbjct: 181 FNPYMIKERLHESSFLFKGLKIVFVDE------NNPELSQTFIAKDGILEYLKYVNENKK 234

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
            IS  I      +K    G  ++      E+  I S+ N++ T EGG+HE+G + A+   
Sbjct: 235 TISKIIPFKGDYEKIVVDGCFQYTD---NESELIISFANSVKTSEGGSHENGFKQAMLET 291

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397
           I  Y++  +  N +       DL      +LSV + E    + GQTK KL + + +  V 
Sbjct: 292 INDYSKKYKLINNKDKGFDWSDLKEGLSVVLSVQVPEKIIAYEGQTKNKLFTQEVKVAVA 351

Query: 398 NALRDPFDHYLVQNPIEATKLL--EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
             L     ++L +N  +A +L+    +I+ ++E  ++ K+     K+A  +  L GKL  
Sbjct: 352 KILTQQLFYFLEENQADAKQLIERFKLIKEAKEAAKKAKENTKKLKSAKSERVLYGKLTP 411

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
             Q      E+F+VEGDSAGG+AK  R++  QA+LPLRGK++NV  +  + +  N++I+ 
Sbjct: 412 AQQKNPLQNEIFLVEGDSAGGTAKSGRDKRFQAILPLRGKVVNVEKSRLQDLLKNEEILS 471

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++  LGC   + +  ++L+Y K+IIMTDAD DGAHI  LLLTFFY+ M +LIEQ  +++ 
Sbjct: 472 IISCLGCGIGNNFNIKNLKYHKIIIMTDADTDGAHIQVLLLTFFYRYMKELIEQGKVYIA 531

Query: 576 SPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
             PL++IT     KS +A D+    ++  ++     G  E+ R+KGLGEM + QL  T M
Sbjct: 532 LAPLYKITAKNSNKSAFAWDDYQLDELRTKY-----GSYEVQRYKGLGEMNSEQLWTTTM 586

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           D +KR L++V I     +    +  ++ LMG  A  R  +I E   F
Sbjct: 587 DPSKRQLIQVSI----QNAAQAERKVSILMGDDASIRKNWINENVDF 629


>gi|325271262|ref|ZP_08137804.1| DNA topoisomerase IV subunit B [Pseudomonas sp. TJI-51]
 gi|324103599|gb|EGC00904.1| DNA topoisomerase IV subunit B [Pseudomonas sp. TJI-51]
          Length = 634

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 246/653 (37%), Positives = 363/653 (55%), Gaps = 27/653 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            AN SAS  Y+A +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A
Sbjct: 1   MANPSASA-YNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHA 56

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             ++V L  +  L V D+GRG+PV+ HP+    S +E+ILT LHAGGKF N  Y+ SGGL
Sbjct: 57  RSVQVILHADHSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213
           HGVGISVVNALS ++ V V R    +   F+ G   S LE    V +   GT + F PDP
Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYQMTFADGFKASELEVVGSVGKRNTGTSVYFSPDP 175

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     F  +RL  + ++KA L   +   +             EK E+++  GL++YL
Sbjct: 176 KYFDSP-KFSISRLKHVLKAKAVLCPGLLVSFEDK-------ASGEKVEWHYEDGLRSYL 227

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHE 331
              +     +  E F G        +  V+WA+ W  E  +    SY N I T +GGTH 
Sbjct: 228 VDSVNEFQRLPDEPFCGSLAGN---KEAVDWALLWLPEGGDSIQESYVNLIPTAQGGTHV 284

Query: 332 SGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           +GLR  L   ++++ E      R + +  +D+      +LS+ +++P+F+GQTK +L S 
Sbjct: 285 NGLRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERITFVLSMKMQDPQFSGQTKERLSSR 344

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
           +A   V   ++D F  +L  +P    +L E  I  +  RL+    ++V RK   +   LP
Sbjct: 345 EAAAFVSGVVKDAFSLWLNAHPELGMQLAELAISNAGRRLK--ASKKVERKRITQGPALP 402

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC+       ELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN       ++  +
Sbjct: 403 GKLADCAGQDPMRAELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLAS 462

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           Q++ ++  A+G    +      LRY K+ I+ DAD DG HIA+LL   F Q    L+E  
Sbjct: 463 QEVHNIAVAIGVDPGATDL-AQLRYGKICILADADSDGLHIATLLCALFVQHFRALVEAG 521

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLK 629
           H+++  PPL+RI  G +  YA DE  +  IL+    +  +GK +++RFKGLGEM   QL+
Sbjct: 522 HVYVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLR 581

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           ET MD N R L+++ ++    + +        L   +A +R  +++ + +  +
Sbjct: 582 ETTMDPNTRRLVQLTLDDVQATCELMDKL---LAKKRAGDRKNWLETKGNLAE 631


>gi|26991593|ref|NP_747018.1| DNA topoisomerase IV subunit B [Pseudomonas putida KT2440]
 gi|24986682|gb|AAN70482.1|AE016689_10 DNA topoisomerase IV, B subunit [Pseudomonas putida KT2440]
          Length = 634

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 246/653 (37%), Positives = 363/653 (55%), Gaps = 27/653 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            AN SAS  Y+A +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A
Sbjct: 1   MANPSASA-YNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHA 56

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             ++V L  +  L V D+GRG+PV+ HP+    S +E+ILT LHAGGKF N  Y+ SGGL
Sbjct: 57  RSVQVILHADHSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213
           HGVGISVVNALS ++ V V R    +   F+ G   S LE    V +   GT + F PDP
Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYQMTFADGFKASELEVVGSVGKRNTGTSVYFSPDP 175

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     F  +RL  + ++KA L   +   +             EK E+++  GL++YL
Sbjct: 176 KYFDSP-KFSISRLKHVLKAKAVLCPGLLVSFEDK-------ASGEKVEWHYEDGLRSYL 227

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHE 331
              +     +  E F G        +  V+WA+ W  E  +    SY N I T +GGTH 
Sbjct: 228 VDSVNEFQRLPDEPFCGSLAGN---KEAVDWALLWLPEGGDSIQESYVNLIPTAQGGTHV 284

Query: 332 SGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           +GLR  L   ++++ E      R + +  +D+      +LS+ +++P+F+GQTK +L S 
Sbjct: 285 NGLRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERITFVLSMKMQDPQFSGQTKERLSSR 344

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
           +A   V   ++D F  +L  +P    +L E  I  +  RL+    ++V RK   +   LP
Sbjct: 345 EAAAFVSGVVKDAFSLWLNAHPELGMQLAELAISNAGRRLK--ASKKVERKRITQGPALP 402

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC+       ELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN       ++  +
Sbjct: 403 GKLADCAGQDPMRAELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLAS 462

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           Q++ ++  A+G    +      LRY K+ I+ DAD DG HIA+LL   F Q    L+E  
Sbjct: 463 QEVHNIAVAIGVDPGATDL-AQLRYGKICILADADSDGLHIATLLCALFVQHFRTLVEAG 521

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLK 629
           H+++  PPL+RI  G +  YA DE  +  IL+    +  +GK +++RFKGLGEM   QL+
Sbjct: 522 HVYVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLR 581

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           ET MD N R L+++ ++    + +        L   +A +R  +++ + +  +
Sbjct: 582 ETTMDPNTRRLVQLTLDDVEATCELMDKL---LAKKRAGDRKSWLETKGNLAE 631


>gi|331649525|ref|ZP_08350611.1| DNA gyrase, B subunit [Escherichia coli M605]
 gi|330908018|gb|EGH36537.1| DNA gyrase subunit B [Escherichia coli AA86]
 gi|331042023|gb|EGI14167.1| DNA gyrase, B subunit [Escherichia coli M605]
          Length = 804

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|262040463|ref|ZP_06013706.1| DNA gyrase subunit B [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259042216|gb|EEW43244.1| DNA gyrase subunit B [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 804

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 230/574 (40%), Positives = 351/574 (61%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHSDNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R N +  Q +  G+P +PL    +  +K GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQRDNKVHKQMYEHGVPQAPLAVTGET-DKTGTMVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L+K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYDILVKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD + R +LRV +   +       
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPDQLWETTMDPDSRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|152972606|ref|YP_001337752.1| DNA gyrase subunit B [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|330005216|ref|ZP_08305175.1| DNA gyrase, B subunit [Klebsiella sp. MS 92-3]
 gi|150957455|gb|ABR79485.1| DNA gyrase subunit B [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|328536348|gb|EGF62710.1| DNA gyrase, B subunit [Klebsiella sp. MS 92-3]
          Length = 804

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 230/574 (40%), Positives = 350/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHSDNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R N +  Q +  G+P +PL    +  +K GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQRDNKVHKQMYEHGVPQAPLAVTGET-DKTGTMVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD + R +LRV +   +       
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPDQLWETTMDPDSRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|251787656|ref|YP_003002377.1| DNA gyrase subunit B [Dickeya zeae Ech1591]
 gi|247536277|gb|ACT04898.1| DNA gyrase, B subunit [Dickeya zeae Ech1591]
          Length = 803

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 227/566 (40%), Positives = 347/566 (61%), Gaps = 17/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L + + R+  I  Q++  G P +PL       +  GT + F P  + F + 
Sbjct: 121 SVVNALSEKLELVIRREGKIHRQEYKHGEPQAPLGVIGDA-DATGTTVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V      ++E        + + F++ GG+K +++    N
Sbjct: 180 VEFEYDILAKRLRELSFLNSGVSIRLRDERE------ANKADHFHYEGGIKAFVEYLNRN 233

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  ++F    EK       VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 234 KTPIHPQVFYFSAEKDDI---GVEIAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNNYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+ + D    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 351 ESLMNDRLVDYLMENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+F+
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVFI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  D+E   + 
Sbjct: 531 AQPPLYKVKKGKQEQYIKDDEAMDQY 556



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + + R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 718 FEQALDWLVKESRRGLAVQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 773

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           +    LMG   + R  FI+E A    ++ 
Sbjct: 774 ELFTTLMGDAVEPRRAFIEENALKAANID 802


>gi|58582592|ref|YP_201608.1| DNA topoisomerase IV subunit B [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58427186|gb|AAW76223.1| topoisomerase IV subunit B [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 673

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 246/673 (36%), Positives = 370/673 (54%), Gaps = 25/673 (3%)

Query: 13  PPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEK 72
           P   + S  K + S     S     +  +  Y+A+ I +L GL+PV+ RPGMY   TD  
Sbjct: 18  PCTERLSRAKNRPSPHTCASFHVPTRCMNTRYNAADIEVLSGLDPVKRRPGMY---TDTA 74

Query: 73  ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
             +HL  EVIDN++DE +AG+A  IEV+L  +G   V D+GRG+PV+ HP+      +E+
Sbjct: 75  RPNHLAQEVIDNSVDEALAGHAKQIEVTLYKDGSCEVSDDGRGMPVDIHPE-EKIPGVEL 133

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
           ILT LHAGGKF+N  Y  SGGLHGVG+SVVNALS ++ + + R+ +    +F  G   S 
Sbjct: 134 ILTRLHAGGKFNNRNYTFSGGLHGVGVSVVNALSTKVELFIKREGSEHRMEFRDGNAASK 193

Query: 193 LEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
           LE    V +   GTR+ F  DPK F     F+   L  + ++KA L   +      +   
Sbjct: 194 LEVVGTVGKKNTGTRLRFWADPKYFDTP-KFNVRALRHLLRAKAVLCPGLTVKLHDE--- 249

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
                  E++ +YF  GL+ YL+ ++    ++ +++F G  +K       V+WA  W  E
Sbjct: 250 ----ATGEQDSWYFENGLRDYLKGEMAEHEMLPADLFVGSLKKDTEI---VDWAAGWVPE 302

Query: 312 NP-EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGI 369
                 SY N I T + GTH +GLR  LT  ++++ +      R + +  +D+      +
Sbjct: 303 GELVQESYVNLIPTAQHGTHVNGLRSGLTDALREFCDFRNLLPRGVKLAPEDVWDRVTFV 362

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           LS+ + +P+F+GQTK +L S  A   +E A  D F  YL QN     K+ +  I+R+  R
Sbjct: 363 LSLKMTDPQFSGQTKERLSSRQAAGFIEGAAHDAFSLYLNQNVEIGEKIAQIAIDRASAR 422

Query: 430 LRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
           L+   ++++ RK   +   LPGKLADC       TELF+VEGDSAGGSAKQAR++  QA+
Sbjct: 423 LK--TEKQIVRKKVTQGPALPGKLADCISQDLSRTELFLVEGDSAGGSAKQARDKDFQAI 480

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549
           LPLRGKILN     S  +  ++++ +L  A+GC          LRY KV+I+ DAD DG 
Sbjct: 481 LPLRGKILNTWEVASGSVLASEEVHNLAIAIGCDPGKDDI-TGLRYGKVVILADADSDGL 539

Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG- 608
           HIA+LL   F Q    L+   H+F+  PPLFR+  G +  YA DEE K  +L++  +   
Sbjct: 540 HIATLLTALFLQHFPALVAAGHVFVAMPPLFRVDVGKQVFYALDEEEKTTLLDKIAREKM 599

Query: 609 KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKAD 668
           KG+I ++RFKGLGEM   QL+E+ +  + R L+++ I+    +          L   +A 
Sbjct: 600 KGQISVTRFKGLGEMNPQQLRESTIHPDTRRLVQLTIDDGEQTRLLMDML---LAKKRAS 656

Query: 669 ERFKFIQERASFI 681
           +R ++++ +    
Sbjct: 657 DRKQWLETKGDLA 669


>gi|260557877|ref|ZP_05830090.1| DNA topoisomerase IV, B subunit [Acinetobacter baumannii ATCC
           19606]
 gi|260408668|gb|EEX01973.1| DNA topoisomerase IV, B subunit [Acinetobacter baumannii ATCC
           19606]
          Length = 627

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 257/645 (39%), Positives = 374/645 (57%), Gaps = 28/645 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y A S+ +L GL+PVR RPGMY   TD    +HL  EVIDNA+DE +AG+A+ I V++ 
Sbjct: 3   QYTAQSLEVLSGLDPVRRRPGMY---TDTSRPNHLAQEVIDNAVDEALAGHADKICVTVY 59

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G L+V DNGRG+PV+ HP++  +S +EIILT LHAGGKF    Y+ SGGLHGVGISVV
Sbjct: 60  KDGSLSVEDNGRGMPVDIHPEY-GQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISVV 118

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGDKA 220
           NALS  + V V RQ  ++   F +G P++PL   E    +   GT + F P+ K F    
Sbjct: 119 NALSTRVEVEVQRQGNLYQMAFEQGEPVAPLAVLEGKAPKRATGTTVRFWPEAKYFDSP- 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L    ++KA L+  +K  +             EK E+ F  GL  YL  +L++R
Sbjct: 178 KFALKALKHNLKAKAVLAAGLKITYIDQ-------INDEKIEWQFENGLVDYLMDELQDR 230

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVAL 338
            ++ + +F    +     R   E+AI W  E  E    SY N I T +GGTH +GLR  +
Sbjct: 231 EILPNPVFVSSGQAD---RAACEFAICWNVEGGEQVQESYVNLIPTAQGGTHVNGLRSGV 287

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           T  ++++ EL     R + + ++D+      ILS+  +EP+F+GQTK +L S +A   V 
Sbjct: 288 TEALREFCELRNLLPRNLKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREAANIVL 347

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
           N  +D F  +L Q+   A +L E  I ++  RL+    ++V RK  +    LPGKLADC 
Sbjct: 348 NIAKDAFALWLNQHAEIAMQLAEMAISKAGRRLK--AAKKVERKKIVSGPALPGKLADCV 405

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +ELFIVEGDSAGGSAKQAR+++ QA++P+RGKILN     S+++  +Q++ D+ 
Sbjct: 406 GQTREESELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIA 465

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S     +LRY K+ I+ DAD DG HIA+LL   F +    L+E+ HL++  P
Sbjct: 466 IAIGVDPGSDDL-SELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAMP 524

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PLFRI  G    YA D+E  + IL+  K  G    +I+RFKGLGEM A QL+ET MD N 
Sbjct: 525 PLFRIDIGKDVHYALDDEELETILKNVK--GNKNPQITRFKGLGEMNAIQLRETTMDPNT 582

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           R L++++++    +          L   +A +R ++++++ +  D
Sbjct: 583 RRLVQLDLDDAHLTAGLLDKL---LAKKRAADRKQWLEQKGNLAD 624


>gi|312967891|ref|ZP_07782103.1| DNA gyrase, B subunit [Escherichia coli 2362-75]
 gi|312287452|gb|EFR15360.1| DNA gyrase, B subunit [Escherichia coli 2362-75]
          Length = 804

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|320321905|gb|EFW78001.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. glycinea
           str. B076]
          Length = 634

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 244/656 (37%), Positives = 369/656 (56%), Gaps = 29/656 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            AN SAS +Y+A +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A
Sbjct: 1   MANPSAS-SYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHA 56

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             ++V L  +  L V D+GRG+PV+ HP+    S +E+ILT LHAGGKF N  Y+ SGGL
Sbjct: 57  RSVQVILHADNSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213
           HGVG+SVVNALS ++ V V R    +   F+ G   + L     V +   GT + F PDP
Sbjct: 116 HGVGVSVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVIGTVGKRNTGTSVYFAPDP 175

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     F  +RL  + ++KA L   +   +             EK E+++  GL++YL
Sbjct: 176 KYFDTP-KFSVSRLKHVLKAKAVLCPGLLVSFEDK-------STNEKVEWHYEDGLRSYL 227

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHE 331
           Q  + +   +  E F G        +  V+WA+ W  E  +    SY N I T +GGTH 
Sbjct: 228 QDSVSDFLRLPDEPFCGSFAGN---KEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHV 284

Query: 332 SGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           +GLR  L   ++++ E      R + +  +D+      +LS+ ++EP+F+GQTK +L S 
Sbjct: 285 NGLRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSR 344

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
           +A   V   ++D F  +L  +     +L +  I  +  RL+    ++V RK   +   LP
Sbjct: 345 EAAAFVSGVVKDAFSLWLNTHSELGLQLADLAINNAGRRLK--ASKKVERKRITQGPALP 402

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC+      +ELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN       ++  +
Sbjct: 403 GKLADCAGQDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLAS 462

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           Q++ ++  A+G    +      LRY K+ I+ DAD DG HIA+LL   F Q    L++  
Sbjct: 463 QEVHNIAVAIGVDPGAADI-SQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAG 521

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLK 629
           H+++  PPL+RI  G +  YA DE  +  IL+    +  +GK +++RFKGLGEM   QL+
Sbjct: 522 HVYVAMPPLYRIDLGKEIYYALDESERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLR 581

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDV 684
           ET MD N R L+++ ++        T + ++ L+  K A +R  +++ + +  + +
Sbjct: 582 ETTMDPNTRRLVQLTLDD----FAATSEMMDMLLAKKRAGDRKSWLESKGNLAEVL 633


>gi|256021283|ref|ZP_05435148.1| DNA gyrase subunit B [Shigella sp. D9]
 gi|331670543|ref|ZP_08371382.1| DNA gyrase, B subunit [Escherichia coli TA271]
 gi|331062605|gb|EGI34525.1| DNA gyrase, B subunit [Escherichia coli TA271]
 gi|332104866|gb|EGJ08212.1| DNA gyrase subunit B [Shigella sp. D9]
          Length = 804

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|169794326|ref|YP_001712119.1| DNA topoisomerase IV subunit B [Acinetobacter baumannii AYE]
 gi|213159099|ref|YP_002321097.1| DNA topoisomerase IV, B subunit [Acinetobacter baumannii AB0057]
 gi|215481883|ref|YP_002324065.1| DNA topoisomerase IV, B subunit [Acinetobacter baumannii
           AB307-0294]
 gi|294836665|ref|ZP_06781348.1| DNA topoisomerase IV subunit B [Acinetobacter sp. 6013113]
 gi|294841351|ref|ZP_06786034.1| DNA topoisomerase IV subunit B [Acinetobacter sp. 6014059]
 gi|294860381|ref|ZP_06798150.1| DNA topoisomerase IV subunit B [Acinetobacter sp. 6013150]
 gi|301345700|ref|ZP_07226441.1| DNA topoisomerase IV subunit B [Acinetobacter baumannii AB056]
 gi|301596077|ref|ZP_07241085.1| DNA topoisomerase IV subunit B [Acinetobacter baumannii AB059]
 gi|169147253|emb|CAM85112.1| topoisomerase IV subunit B [Acinetobacter baumannii AYE]
 gi|213058259|gb|ACJ43161.1| DNA topoisomerase IV, B subunit [Acinetobacter baumannii AB0057]
 gi|213985902|gb|ACJ56201.1| DNA topoisomerase IV, B subunit [Acinetobacter baumannii
           AB307-0294]
 gi|322509788|gb|ADX05242.1| Topoisomerase IV subunit B [Acinetobacter baumannii 1656-2]
 gi|323519801|gb|ADX94182.1| DNA topoisomerase IV subunit B [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 627

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 257/645 (39%), Positives = 373/645 (57%), Gaps = 28/645 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y A S+ +L GL+PVR RPGMY   TD    +HL  EVIDNA+DE +AG+A+ I V++ 
Sbjct: 3   QYTAQSLEVLSGLDPVRRRPGMY---TDTSRPNHLAQEVIDNAVDEALAGHADKICVTVY 59

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G L+V DNGRG+PV+ HP++  +S +EIILT LHAGGKF    Y+ SGGLHGVGISVV
Sbjct: 60  KDGSLSVEDNGRGMPVDIHPEY-GQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISVV 118

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGDKA 220
           NALS  + V V RQ  ++   F +G P++PL   E    +   GT + F P+ K F    
Sbjct: 119 NALSTRVEVEVQRQGNLYQMAFEQGEPVAPLAVLEGKAPKRATGTTVRFWPEAKYFDSP- 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L    ++KA L+  +K  +             EK E+ F  GL  YL  +L++R
Sbjct: 178 KFALKALKHNLKAKAVLAAGLKITYIDQ-------INDEKIEWQFENGLVDYLMDELQDR 230

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVAL 338
            ++ +  F    +     R   E+AI W  E  E    SY N I T +GGTH +GLR  +
Sbjct: 231 EILPNPAFVSSGQAD---RAACEFAICWNVEGGEQVQESYVNLIPTAQGGTHVNGLRSGV 287

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           T  ++++ EL     R + + ++D+      ILS+  +EP+F+GQTK +L S +A   V 
Sbjct: 288 TEALREFCELRNLLPRNLKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREAANIVL 347

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
           N  +D F  +L Q+   A +L E  I ++  RL+    ++V RK  +    LPGKLADC 
Sbjct: 348 NIAKDAFALWLNQHAEIAMQLAEMAISKAGRRLK--AAKKVERKKIVSGPALPGKLADCV 405

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +ELFIVEGDSAGGSAKQAR+++ QA++P+RGKILN     S+++  +Q++ D+ 
Sbjct: 406 GQTREESELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIA 465

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S     +LRY K+ I+ DAD DG HIA+LL   F +    L+E+ HL++  P
Sbjct: 466 IAIGVDPGSDDL-SELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAMP 524

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PLFRI  G    YA D+E  + IL+  K  G    +I+RFKGLGEM A QL+ET MD N 
Sbjct: 525 PLFRIDIGKDVHYALDDEELETILKNVK--GNKNPQITRFKGLGEMNAIQLRETTMDPNT 582

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           R L++++++    +          L   +A +R ++++++ +  D
Sbjct: 583 RRLVQLDLDDAHLTAGLLDKL---LAKKRAADRKQWLEQKGNLAD 624


>gi|194431109|ref|ZP_03063402.1| DNA gyrase, B subunit [Shigella dysenteriae 1012]
 gi|194420564|gb|EDX36640.1| DNA gyrase, B subunit [Shigella dysenteriae 1012]
 gi|320180040|gb|EFW54982.1| DNA gyrase subunit B [Shigella boydii ATCC 9905]
 gi|332084055|gb|EGI89262.1| DNA gyrase, B subunit [Shigella dysenteriae 155-74]
 gi|332084889|gb|EGI90072.1| DNA gyrase, B subunit [Shigella boydii 5216-82]
          Length = 804

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|1546916|emb|CAA69221.1| subunit B of DNA gyrase [Salmonella enterica subsp. enterica
           serovar Typhimurium]
          Length = 804

 Score =  528 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 229/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVTDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R   I  Q +  G+P +PL       +K GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWPSHETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|331685423|ref|ZP_08386009.1| DNA gyrase, B subunit [Escherichia coli H299]
 gi|331077794|gb|EGI49006.1| DNA gyrase, B subunit [Escherichia coli H299]
          Length = 804

 Score =  528 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|56415708|ref|YP_152783.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197364636|ref|YP_002144273.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56129965|gb|AAV79471.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197096113|emb|CAR61709.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 804

 Score =  528 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVTDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R   I  Q +  G+P +PL       +K GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWPSHETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     +E A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GIEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ LE   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALEWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|331675189|ref|ZP_08375942.1| DNA gyrase, B subunit [Escherichia coli TA280]
 gi|284923782|emb|CBG36880.1| DNA gyrase subunit B [Escherichia coli 042]
 gi|331067634|gb|EGI39036.1| DNA gyrase, B subunit [Escherichia coli TA280]
          Length = 804

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|82546037|ref|YP_409984.1| DNA gyrase subunit B [Shigella boydii Sb227]
 gi|187731654|ref|YP_001882467.1| DNA gyrase subunit B [Shigella boydii CDC 3083-94]
 gi|81247448|gb|ABB68156.1| DNA gyrase subunit B [Shigella boydii Sb227]
 gi|187428646|gb|ACD07920.1| DNA gyrase, B subunit [Shigella boydii CDC 3083-94]
 gi|320174827|gb|EFW49950.1| DNA gyrase subunit B [Shigella dysenteriae CDC 74-1112]
 gi|332089417|gb|EGI94521.1| DNA gyrase, B subunit [Shigella boydii 3594-74]
          Length = 804

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 LLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|71737102|ref|YP_272846.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257482433|ref|ZP_05636474.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|289628173|ref|ZP_06461127.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289649095|ref|ZP_06480438.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|298484936|ref|ZP_07003034.1| Topoisomerase IV subunit B [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|71557655|gb|AAZ36866.1| DNA topoisomerase IV, B subunit [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298160490|gb|EFI01513.1| Topoisomerase IV subunit B [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|320330990|gb|EFW86964.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330865872|gb|EGH00581.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330984582|gb|EGH82685.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 634

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 245/656 (37%), Positives = 369/656 (56%), Gaps = 29/656 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            AN SAS +Y+A +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A
Sbjct: 1   MANPSAS-SYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHA 56

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             ++V L  +  L V D+GRG+PV+ HP+    S +E+ILT LHAGGKF N  Y+ SGGL
Sbjct: 57  RSVQVILHADNSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213
           HGVGISVVNALS ++ V V R    +   F+ G   + L     V +   GT + F PDP
Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVIGTVGKRNTGTSVYFAPDP 175

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     F  +RL  + ++KA L   +   +             EK E+++  GL++YL
Sbjct: 176 KYFDTP-KFSVSRLKHVLKAKAVLCPGLLVSFEDK-------STNEKVEWHYEDGLRSYL 227

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHE 331
           Q  + +   +  E F G        +  V+WA+ W  E  +    SY N I T +GGTH 
Sbjct: 228 QDSVSDFLRLPDEPFCGSFAGN---KEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHV 284

Query: 332 SGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           +GLR  L   ++++ E      R + +  +D+      +LS+ ++EP+F+GQTK +L S 
Sbjct: 285 NGLRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSR 344

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
           +A   V   ++D F  +L  +     +L +  I  +  RL+    ++V RK   +   LP
Sbjct: 345 EAAAFVSGVVKDAFSLWLNTHSELGLQLADLAINNAGRRLK--ASKKVERKRITQGPALP 402

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC+      +ELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN       ++  +
Sbjct: 403 GKLADCAGQDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLAS 462

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           Q++ ++  A+G    +      LRY K+ I+ DAD DG HIA+LL   F Q    L++  
Sbjct: 463 QEVHNIAVAIGVDPGAADI-SQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAG 521

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLK 629
           H+++  PPL+RI  G +  YA DE  +  IL+    +  +GK +++RFKGLGEM   QL+
Sbjct: 522 HVYVAMPPLYRIDLGKEIYYALDESERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLR 581

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDV 684
           ET MD N R L+++ ++        T + ++ L+  K A +R  +++ + +  + +
Sbjct: 582 ETTMDPNTRRLVQLTLDD----FAATSEMMDMLLAKKRAGDRKSWLESKGNLAEVL 633


>gi|271498582|ref|YP_003331607.1| DNA gyrase subunit B [Dickeya dadantii Ech586]
 gi|270342137|gb|ACZ74902.1| DNA gyrase, B subunit [Dickeya dadantii Ech586]
          Length = 803

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 227/574 (39%), Positives = 348/574 (60%), Gaps = 17/574 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L + + R+  +  Q++  G P +PL       +  GT + F P  + F + 
Sbjct: 121 SVVNALSEKLELVIRREGKLHRQEYKHGEPQAPLGVIGDA-DATGTTVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V      ++E        + + F++ GG+K +++    N
Sbjct: 180 VEFEYDILAKRLRELSFLNSGVSIRLRDERE------ANKADHFHYEGGIKAFVEYLNRN 233

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  ++F    EK       VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 234 KTPIHPQVFYFSAEKDDI---GVEIAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNNYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+ + D    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 351 ESLMNDRLVDYLMENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+F+
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVFI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 531 AQPPLYKVKKGKQEQYIKDDEAMDQYQIALALDG 564



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 718 FEQALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 773

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           +    LMG   + R  FI+E A    ++ 
Sbjct: 774 ELFTTLMGDAVEPRRAFIEENALKAANID 802


>gi|238897209|ref|YP_002921957.1| DNA gyrase subunit B [Klebsiella pneumoniae NTUH-K2044]
 gi|238549539|dbj|BAH65890.1| DNA gyrase subunit B [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 805

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 230/574 (40%), Positives = 350/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY   I V
Sbjct: 3   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIVV 62

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 63  TIHSDNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 121

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R N +  Q +  G+P +PL    +  +K GT + F P  + F + 
Sbjct: 122 SVVNALSQKLELVIQRDNKVHKQMYEHGVPQAPLAVTGET-DKTGTMVRFWPSLETFTNV 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 181 TEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 233

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 234 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 351 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 531 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 564



 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD + R +LRV +   +       
Sbjct: 720 FEQALDWLVKESRRGLSIQRYKGLGEMNPDQLWETTMDPDSRRMLRVTVKDAI----AAD 775

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 776 QLFTTLMGDAVEPRRAFIEENALKAANID 804


>gi|215489039|ref|YP_002331470.1| DNA gyrase subunit B [Escherichia coli O127:H6 str. E2348/69]
 gi|215267111|emb|CAS11558.1| DNA gyrase, subunit B [Escherichia coli O127:H6 str. E2348/69]
          Length = 804

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQREGKIHCQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|148654052|ref|YP_001281145.1| DNA topoisomerase IV subunit B [Psychrobacter sp. PRwf-1]
 gi|148573136|gb|ABQ95195.1| DNA topoisomerase IV subunit B [Psychrobacter sp. PRwf-1]
          Length = 629

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 248/646 (38%), Positives = 370/646 (57%), Gaps = 26/646 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY A S+ +LEGLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  I+V L
Sbjct: 2   SNYTAQSLEVLEGLEPVRRRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHAKTIKVQL 58

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G L+V D+GRG+P + HP+F  ++ +EIILT LHAGGKF+ S Y++SGGLHGVGISV
Sbjct: 59  HNDGSLSVEDDGRGMPTDIHPEF-KQTGIEIILTRLHAGGKFNTSNYQVSGGLHGVGISV 117

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSP-LEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VNALS  + VTV R  + +   F  G P++  +E     + K+GT++ F  D + F D  
Sbjct: 118 VNALSKRVEVTVWRDGSQYDIAFENGAPVTELVESVSSNKRKKGTKVRFWVD-ESFFDTP 176

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F   +L    ++KA L+  +   +  +    +         + F  G+  YL  +L+  
Sbjct: 177 KFSVKQLKHNLKAKAVLAAGLTIEFFDEINNDK-------VVWQFADGVVEYLNEQLDGL 229

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +  E F    E K   R  V +A++W  +       SY N I T +GGTH +GLR  +
Sbjct: 230 ETLPPEPFYFSYEAKEGERSGVTFALSWLPQGGTPIQESYVNLIPTAQGGTHVNGLRTGI 289

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E+     R + +  +D+      ILS+   EP+F+GQTK +L S +A   V+
Sbjct: 290 LEALREFCEIHNLLPRNVKLTGEDVWDGVNYILSLKFSEPQFSGQTKERLSSREAAGAVQ 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
              +D F  +L Q+     ++ E  I ++  RL+    ++V RK   +   LPGKLADC 
Sbjct: 350 AQAKDAFSLWLNQHADLGAQIAELAISKAGRRLK--SAKKVARKKITQGPALPGKLADCR 407

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
             +  G ELF+VEGDSAGGSAKQAR+R  QA+LPLRGKILN      + + ++++I D+ 
Sbjct: 408 GGVRDGAELFLVEGDSAGGSAKQARDRHFQAILPLRGKILNTWEVSPDTVLSSREIHDIA 467

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S     +LRY+KV I+ DAD DG HIA+L+   F +    L++  HLF+  P
Sbjct: 468 IAIGVDPASDDL-SELRYDKVCILADADSDGLHIATLICALFVKHFPALVDAGHLFVAMP 526

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G +  YA DE   + IL      G  K +I+RFKGLGEM A QL+ET M+ + 
Sbjct: 527 PLYRIDIGKEVHYALDESELEHILSNVP--GNKKPQITRFKGLGEMSAEQLRETTMNPDT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++    D++ ++ T   ++ L+  K A +R  +++ +    +
Sbjct: 585 RRLVQL----DMDDMQLTNSVMDMLLAKKRAGDRKTWLESKGDLAE 626


>gi|62182323|ref|YP_218740.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62129956|gb|AAX67659.1| DNA gyrase, subunit B (type II topoisomerase) [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|322716814|gb|EFZ08385.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 804

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 229/574 (39%), Positives = 349/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V+D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVMDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R   I  Q +  G+P +PL       +K GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWPSHETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ LE   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALEWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|323155375|gb|EFZ41558.1| DNA gyrase, B subunit [Escherichia coli EPECa14]
          Length = 790

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  117 bits (292), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERF 671
                LMG   + R 
Sbjct: 775 QLFTTLMGDAVEPRR 789


>gi|170680955|ref|YP_001746027.1| DNA gyrase subunit B [Escherichia coli SMS-3-5]
 gi|170518673|gb|ACB16851.1| DNA gyrase, B subunit [Escherichia coli SMS-3-5]
          Length = 804

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|110644042|ref|YP_671772.1| DNA gyrase subunit B [Escherichia coli 536]
 gi|117625975|ref|YP_859298.1| DNA gyrase subunit B [Escherichia coli APEC O1]
 gi|191170615|ref|ZP_03032168.1| DNA gyrase, B subunit [Escherichia coli F11]
 gi|218560774|ref|YP_002393687.1| DNA gyrase subunit B [Escherichia coli S88]
 gi|218691987|ref|YP_002400199.1| DNA gyrase subunit B [Escherichia coli ED1a]
 gi|227883920|ref|ZP_04001725.1| DNA gyrase subunit B [Escherichia coli 83972]
 gi|300983650|ref|ZP_07176691.1| DNA gyrase, B subunit [Escherichia coli MS 200-1]
 gi|300984543|ref|ZP_07177033.1| DNA gyrase, B subunit [Escherichia coli MS 45-1]
 gi|301047517|ref|ZP_07194593.1| DNA gyrase, B subunit [Escherichia coli MS 185-1]
 gi|331660041|ref|ZP_08360979.1| DNA gyrase, B subunit [Escherichia coli TA206]
 gi|110345634|gb|ABG71871.1| DNA gyrase subunit B [Escherichia coli 536]
 gi|115515099|gb|ABJ03174.1| DNA gyrase subunit B [Escherichia coli APEC O1]
 gi|190909423|gb|EDV69009.1| DNA gyrase, B subunit [Escherichia coli F11]
 gi|218367543|emb|CAR05328.1| DNA gyrase, subunit B [Escherichia coli S88]
 gi|218429551|emb|CAR10515.2| DNA gyrase, subunit B [Escherichia coli ED1a]
 gi|227839198|gb|EEJ49664.1| DNA gyrase subunit B [Escherichia coli 83972]
 gi|294493517|gb|ADE92273.1| DNA gyrase, B subunit [Escherichia coli IHE3034]
 gi|300300577|gb|EFJ56962.1| DNA gyrase, B subunit [Escherichia coli MS 185-1]
 gi|300306873|gb|EFJ61393.1| DNA gyrase, B subunit [Escherichia coli MS 200-1]
 gi|300408376|gb|EFJ91914.1| DNA gyrase, B subunit [Escherichia coli MS 45-1]
 gi|307555839|gb|ADN48614.1| DNA gyrase subunit B [Escherichia coli ABU 83972]
 gi|307628775|gb|ADN73079.1| DNA gyrase subunit B [Escherichia coli UM146]
 gi|315285496|gb|EFU44941.1| DNA gyrase, B subunit [Escherichia coli MS 110-3]
 gi|315292857|gb|EFU52209.1| DNA gyrase, B subunit [Escherichia coli MS 153-1]
 gi|323949942|gb|EGB45826.1| hypothetical protein ERKG_03785 [Escherichia coli H252]
 gi|323955007|gb|EGB50785.1| hypothetical protein ERLG_03725 [Escherichia coli H263]
 gi|324012740|gb|EGB81959.1| DNA gyrase, B subunit [Escherichia coli MS 60-1]
 gi|331053256|gb|EGI25289.1| DNA gyrase, B subunit [Escherichia coli TA206]
          Length = 804

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|300940884|ref|ZP_07155411.1| DNA gyrase, B subunit [Escherichia coli MS 21-1]
 gi|300454365|gb|EFK17858.1| DNA gyrase, B subunit [Escherichia coli MS 21-1]
          Length = 804

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|15833888|ref|NP_312661.1| DNA gyrase subunit B [Escherichia coli O157:H7 str. Sakai]
 gi|30065007|ref|NP_839178.1| DNA gyrase subunit B [Shigella flexneri 2a str. 2457T]
 gi|49176395|ref|YP_026241.1| DNA gyrase, subunit B [Escherichia coli str. K-12 substr. MG1655]
 gi|56480411|ref|NP_709501.2| DNA gyrase subunit B [Shigella flexneri 2a str. 301]
 gi|74314013|ref|YP_312432.1| DNA gyrase subunit B [Shigella sonnei Ss046]
 gi|89110314|ref|AP_004094.1| DNA gyrase, subunit B [Escherichia coli str. K-12 substr. W3110]
 gi|110807611|ref|YP_691131.1| DNA gyrase subunit B [Shigella flexneri 5 str. 8401]
 gi|157155879|ref|YP_001465184.1| DNA gyrase subunit B [Escherichia coli E24377A]
 gi|157163179|ref|YP_001460497.1| DNA gyrase subunit B [Escherichia coli HS]
 gi|168748585|ref|ZP_02773607.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4113]
 gi|168753588|ref|ZP_02778595.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4401]
 gi|168759885|ref|ZP_02784892.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4501]
 gi|168766186|ref|ZP_02791193.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4486]
 gi|168772266|ref|ZP_02797273.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4196]
 gi|168779921|ref|ZP_02804928.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4076]
 gi|168785654|ref|ZP_02810661.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC869]
 gi|168798734|ref|ZP_02823741.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC508]
 gi|170018065|ref|YP_001723019.1| DNA gyrase subunit B [Escherichia coli ATCC 8739]
 gi|188496243|ref|ZP_03003513.1| DNA gyrase, B subunit [Escherichia coli 53638]
 gi|191165787|ref|ZP_03027625.1| DNA gyrase, B subunit [Escherichia coli B7A]
 gi|193063868|ref|ZP_03044955.1| DNA gyrase, B subunit [Escherichia coli E22]
 gi|193069227|ref|ZP_03050184.1| DNA gyrase, B subunit [Escherichia coli E110019]
 gi|194428131|ref|ZP_03060675.1| DNA gyrase, B subunit [Escherichia coli B171]
 gi|194435834|ref|ZP_03067937.1| DNA gyrase, B subunit [Escherichia coli 101-1]
 gi|195936320|ref|ZP_03081702.1| DNA gyrase subunit B [Escherichia coli O157:H7 str. EC4024]
 gi|208808465|ref|ZP_03250802.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4206]
 gi|208812166|ref|ZP_03253495.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4045]
 gi|208821994|ref|ZP_03262314.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4042]
 gi|209921176|ref|YP_002295260.1| DNA gyrase subunit B [Escherichia coli SE11]
 gi|218556264|ref|YP_002389178.1| DNA gyrase subunit B [Escherichia coli IAI1]
 gi|218697421|ref|YP_002405088.1| DNA gyrase subunit B [Escherichia coli 55989]
 gi|238902789|ref|YP_002928585.1| DNA gyrase, subunit B [Escherichia coli BW2952]
 gi|253771439|ref|YP_003034270.1| DNA gyrase subunit B [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254163650|ref|YP_003046758.1| DNA gyrase subunit B [Escherichia coli B str. REL606]
 gi|254795702|ref|YP_003080539.1| DNA gyrase subunit B [Escherichia coli O157:H7 str. TW14359]
 gi|256025570|ref|ZP_05439435.1| DNA gyrase subunit B [Escherichia sp. 4_1_40B]
 gi|260846516|ref|YP_003224294.1| DNA gyrase subunit B [Escherichia coli O103:H2 str. 12009]
 gi|260857890|ref|YP_003231781.1| DNA gyrase subunit B [Escherichia coli O26:H11 str. 11368]
 gi|260870430|ref|YP_003236832.1| DNA gyrase subunit B [Escherichia coli O111:H- str. 11128]
 gi|261225852|ref|ZP_05940133.1| DNA gyrase subunit B [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258897|ref|ZP_05951430.1| DNA gyrase subunit B [Escherichia coli O157:H7 str. FRIK966]
 gi|291285118|ref|YP_003501936.1| DNA gyrase subunit B [Escherichia coli O55:H7 str. CB9615]
 gi|293417172|ref|ZP_06659799.1| hypothetical protein ECDG_04325 [Escherichia coli B185]
 gi|293464023|ref|ZP_06664437.1| hypothetical protein ECCG_04105 [Escherichia coli B088]
 gi|300815054|ref|ZP_07095279.1| DNA gyrase, B subunit [Escherichia coli MS 107-1]
 gi|300824316|ref|ZP_07104432.1| DNA gyrase, B subunit [Escherichia coli MS 119-7]
 gi|300903026|ref|ZP_07120968.1| DNA gyrase, B subunit [Escherichia coli MS 84-1]
 gi|300917471|ref|ZP_07134131.1| DNA gyrase, B subunit [Escherichia coli MS 115-1]
 gi|300925523|ref|ZP_07141398.1| DNA gyrase, B subunit [Escherichia coli MS 182-1]
 gi|300932330|ref|ZP_07147598.1| DNA gyrase, B subunit [Escherichia coli MS 187-1]
 gi|301020912|ref|ZP_07184967.1| DNA gyrase, B subunit [Escherichia coli MS 69-1]
 gi|301305955|ref|ZP_07212037.1| DNA gyrase, B subunit [Escherichia coli MS 124-1]
 gi|301325009|ref|ZP_07218559.1| DNA gyrase, B subunit [Escherichia coli MS 78-1]
 gi|301644371|ref|ZP_07244372.1| DNA gyrase, B subunit [Escherichia coli MS 146-1]
 gi|307140399|ref|ZP_07499755.1| DNA gyrase subunit B [Escherichia coli H736]
 gi|307313232|ref|ZP_07592857.1| DNA gyrase, B subunit [Escherichia coli W]
 gi|309795752|ref|ZP_07690167.1| DNA gyrase, B subunit [Escherichia coli MS 145-7]
 gi|312972009|ref|ZP_07786183.1| DNA gyrase, B subunit [Escherichia coli 1827-70]
 gi|331644423|ref|ZP_08345552.1| DNA gyrase, B subunit [Escherichia coli H736]
 gi|331655359|ref|ZP_08356358.1| DNA gyrase, B subunit [Escherichia coli M718]
 gi|331665349|ref|ZP_08366250.1| DNA gyrase, B subunit [Escherichia coli TA143]
 gi|331679797|ref|ZP_08380467.1| DNA gyrase, B subunit [Escherichia coli H591]
 gi|84028819|sp|P0AES7|GYRB_ECO57 RecName: Full=DNA gyrase subunit B
 gi|84028820|sp|P0AES6|GYRB_ECOLI RecName: Full=DNA gyrase subunit B
 gi|84028821|sp|P0AES8|GYRB_SHIFL RecName: Full=DNA gyrase subunit B
 gi|41646|emb|CAA27871.1| unnamed protein product [Escherichia coli K-12]
 gi|13364109|dbj|BAB38057.1| DNA gyrase subunit B GyrB [Escherichia coli O157:H7 str. Sakai]
 gi|30043268|gb|AAP18989.1| DNA gyrase subunit B, type II topoisomerase [Shigella flexneri 2a
           str. 2457T]
 gi|48994957|gb|AAT48201.1| DNA gyrase, subunit B [Escherichia coli str. K-12 substr. MG1655]
 gi|56383962|gb|AAN45208.2| DNA gyrase subunit B, type II topoisomerase [Shigella flexneri 2a
           str. 301]
 gi|73857490|gb|AAZ90197.1| DNA gyrase subunit B [Shigella sonnei Ss046]
 gi|85676345|dbj|BAE77595.1| DNA gyrase, subunit B [Escherichia coli str. K12 substr. W3110]
 gi|110617159|gb|ABF05826.1| DNA gyrase subunit B [Shigella flexneri 5 str. 8401]
 gi|157068859|gb|ABV08114.1| DNA gyrase, B subunit [Escherichia coli HS]
 gi|157077909|gb|ABV17617.1| DNA gyrase, B subunit [Escherichia coli E24377A]
 gi|169752993|gb|ACA75692.1| DNA gyrase, B subunit [Escherichia coli ATCC 8739]
 gi|187771557|gb|EDU35401.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4196]
 gi|188016891|gb|EDU55013.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4113]
 gi|188491442|gb|EDU66545.1| DNA gyrase, B subunit [Escherichia coli 53638]
 gi|189002544|gb|EDU71530.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4076]
 gi|189359308|gb|EDU77727.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4401]
 gi|189364475|gb|EDU82894.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4486]
 gi|189369611|gb|EDU88027.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4501]
 gi|189374237|gb|EDU92653.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC869]
 gi|189378801|gb|EDU97217.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC508]
 gi|190904111|gb|EDV63822.1| DNA gyrase, B subunit [Escherichia coli B7A]
 gi|192930583|gb|EDV83190.1| DNA gyrase, B subunit [Escherichia coli E22]
 gi|192957551|gb|EDV87997.1| DNA gyrase, B subunit [Escherichia coli E110019]
 gi|194413889|gb|EDX30167.1| DNA gyrase, B subunit [Escherichia coli B171]
 gi|194425377|gb|EDX41361.1| DNA gyrase, B subunit [Escherichia coli 101-1]
 gi|208728266|gb|EDZ77867.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4206]
 gi|208733443|gb|EDZ82130.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4045]
 gi|208742117|gb|EDZ89799.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4042]
 gi|209754140|gb|ACI75377.1| DNA repair and genetic recombination protein RecF [Escherichia
           coli]
 gi|209754142|gb|ACI75378.1| DNA repair and genetic recombination protein RecF [Escherichia
           coli]
 gi|209754144|gb|ACI75379.1| DNA repair and genetic recombination protein RecF [Escherichia
           coli]
 gi|209754146|gb|ACI75380.1| DNA repair and genetic recombination protein RecF [Escherichia
           coli]
 gi|209914435|dbj|BAG79509.1| DNA gyrase subunit B [Escherichia coli SE11]
 gi|218354153|emb|CAV00752.1| DNA gyrase, subunit B [Escherichia coli 55989]
 gi|218363033|emb|CAR00672.1| DNA gyrase, subunit B [Escherichia coli IAI1]
 gi|222035413|emb|CAP78158.1| DNA gyrase subunit B [Escherichia coli LF82]
 gi|238860819|gb|ACR62817.1| DNA gyrase, subunit B [Escherichia coli BW2952]
 gi|242379238|emb|CAQ34043.1| DNA gyrase, subunit B, subunit of DNA gyrase [Escherichia coli
           BL21(DE3)]
 gi|253322483|gb|ACT27085.1| DNA gyrase, B subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253975551|gb|ACT41222.1| DNA gyrase subunit B [Escherichia coli B str. REL606]
 gi|253979707|gb|ACT45377.1| DNA gyrase subunit B [Escherichia coli BL21(DE3)]
 gi|254595102|gb|ACT74463.1| DNA gyrase, subunit B [Escherichia coli O157:H7 str. TW14359]
 gi|257756539|dbj|BAI28041.1| DNA gyrase subunit B [Escherichia coli O26:H11 str. 11368]
 gi|257761663|dbj|BAI33160.1| DNA gyrase subunit B [Escherichia coli O103:H2 str. 12009]
 gi|257766786|dbj|BAI38281.1| DNA gyrase subunit B [Escherichia coli O111:H- str. 11128]
 gi|260447283|gb|ACX37705.1| DNA gyrase, B subunit [Escherichia coli DH1]
 gi|281603074|gb|ADA76058.1| DNA gyrase subunit B [Shigella flexneri 2002017]
 gi|290764991|gb|ADD58952.1| DNA gyrase subunit B [Escherichia coli O55:H7 str. CB9615]
 gi|291321655|gb|EFE61091.1| hypothetical protein ECCG_04105 [Escherichia coli B088]
 gi|291431203|gb|EFF04196.1| hypothetical protein ECDG_04325 [Escherichia coli B185]
 gi|300398379|gb|EFJ81917.1| DNA gyrase, B subunit [Escherichia coli MS 69-1]
 gi|300404932|gb|EFJ88470.1| DNA gyrase, B subunit [Escherichia coli MS 84-1]
 gi|300415275|gb|EFJ98585.1| DNA gyrase, B subunit [Escherichia coli MS 115-1]
 gi|300418363|gb|EFK01674.1| DNA gyrase, B subunit [Escherichia coli MS 182-1]
 gi|300459916|gb|EFK23409.1| DNA gyrase, B subunit [Escherichia coli MS 187-1]
 gi|300523203|gb|EFK44272.1| DNA gyrase, B subunit [Escherichia coli MS 119-7]
 gi|300531946|gb|EFK53008.1| DNA gyrase, B subunit [Escherichia coli MS 107-1]
 gi|300838806|gb|EFK66566.1| DNA gyrase, B subunit [Escherichia coli MS 124-1]
 gi|300848103|gb|EFK75863.1| DNA gyrase, B subunit [Escherichia coli MS 78-1]
 gi|301077312|gb|EFK92118.1| DNA gyrase, B subunit [Escherichia coli MS 146-1]
 gi|306906915|gb|EFN37424.1| DNA gyrase, B subunit [Escherichia coli W]
 gi|308120631|gb|EFO57893.1| DNA gyrase, B subunit [Escherichia coli MS 145-7]
 gi|309704146|emb|CBJ03493.1| DNA gyrase subunit B [Escherichia coli ETEC H10407]
 gi|310334386|gb|EFQ00591.1| DNA gyrase, B subunit [Escherichia coli 1827-70]
 gi|312948266|gb|ADR29093.1| DNA gyrase subunit B [Escherichia coli O83:H1 str. NRG 857C]
 gi|313647707|gb|EFS12155.1| DNA gyrase, B subunit [Shigella flexneri 2a str. 2457T]
 gi|315063005|gb|ADT77332.1| DNA gyrase, subunit B [Escherichia coli W]
 gi|315138283|dbj|BAJ45442.1| DNA gyrase subunit B [Escherichia coli DH1]
 gi|315254614|gb|EFU34582.1| DNA gyrase, B subunit [Escherichia coli MS 85-1]
 gi|315618595|gb|EFU99181.1| DNA gyrase, B subunit [Escherichia coli 3431]
 gi|320191201|gb|EFW65851.1| DNA gyrase subunit B [Escherichia coli O157:H7 str. EC1212]
 gi|320201273|gb|EFW75854.1| DNA gyrase subunit B [Escherichia coli EC4100B]
 gi|320639424|gb|EFX09039.1| DNA gyrase subunit B [Escherichia coli O157:H7 str. G5101]
 gi|320655479|gb|EFX23414.1| DNA gyrase subunit B [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320661105|gb|EFX28541.1| DNA gyrase subunit B [Escherichia coli O55:H7 str. USDA 5905]
 gi|320666231|gb|EFX33237.1| DNA gyrase subunit B [Escherichia coli O157:H7 str. LSU-61]
 gi|323161049|gb|EFZ46968.1| DNA gyrase, B subunit [Escherichia coli E128010]
 gi|323164689|gb|EFZ50484.1| DNA gyrase, B subunit [Shigella sonnei 53G]
 gi|323173317|gb|EFZ58946.1| DNA gyrase, B subunit [Escherichia coli LT-68]
 gi|323177711|gb|EFZ63295.1| DNA gyrase, B subunit [Escherichia coli 1180]
 gi|323182494|gb|EFZ67898.1| DNA gyrase, B subunit [Escherichia coli 1357]
 gi|323189566|gb|EFZ74846.1| DNA gyrase, B subunit [Escherichia coli RN587/1]
 gi|323376401|gb|ADX48669.1| DNA gyrase, B subunit [Escherichia coli KO11]
 gi|323934950|gb|EGB31328.1| hypothetical protein ERCG_03773 [Escherichia coli E1520]
 gi|323939117|gb|EGB35331.1| hypothetical protein ERDG_04214 [Escherichia coli E482]
 gi|323944171|gb|EGB40251.1| hypothetical protein EREG_04262 [Escherichia coli H120]
 gi|323971176|gb|EGB66422.1| hypothetical protein ERHG_02793 [Escherichia coli TA007]
 gi|324018433|gb|EGB87652.1| DNA gyrase, B subunit [Escherichia coli MS 117-3]
 gi|324115949|gb|EGC09875.1| hypothetical protein ERBG_04036 [Escherichia coli E1167]
 gi|326337252|gb|EGD61087.1| DNA gyrase subunit B [Escherichia coli O157:H7 str. 1044]
 gi|326341623|gb|EGD65412.1| DNA gyrase subunit B [Escherichia coli O157:H7 str. 1125]
 gi|331036717|gb|EGI08943.1| DNA gyrase, B subunit [Escherichia coli H736]
 gi|331047374|gb|EGI19452.1| DNA gyrase, B subunit [Escherichia coli M718]
 gi|331057859|gb|EGI29845.1| DNA gyrase, B subunit [Escherichia coli TA143]
 gi|331072969|gb|EGI44294.1| DNA gyrase, B subunit [Escherichia coli H591]
          Length = 804

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|209754138|gb|ACI75376.1| DNA repair and genetic recombination protein RecF [Escherichia
           coli]
 gi|320644867|gb|EFX13903.1| DNA gyrase subunit B [Escherichia coli O157:H- str. 493-89]
 gi|320650131|gb|EFX18627.1| DNA gyrase subunit B [Escherichia coli O157:H- str. H 2687]
          Length = 804

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|251793709|ref|YP_003008439.1| DNA gyrase subunit B [Aggregatibacter aphrophilus NJ8700]
 gi|247535106|gb|ACS98352.1| DNA gyrase, B subunit [Aggregatibacter aphrophilus NJ8700]
          Length = 806

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 232/570 (40%), Positives = 351/570 (61%), Gaps = 19/570 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           + +  +NY A+SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY +
Sbjct: 2   STNTPENYGANSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCD 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V D+GRGIPV+ HP+    S  E+I+T LHAGGKFD+++Y++SGGLH
Sbjct: 62  DIVVTIHSDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD+L +T+ RQ  +  Q +S G P +PL    +  N+ GT + F P P I
Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGKVHEQFYSLGDPKAPLAVIGET-NQTGTTVRFWPSPTI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   F+   L K  +  ++L+  V      ++   E       + F++ GG++ +++ 
Sbjct: 180 FTNI-EFEYDTLAKRLRELSFLNSGVSIRLVDERNGKE-------DHFHYEGGIQAFVEY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
               ++ I  + F    EK G     VE A+ W +     I  + N I   +GGTH +G 
Sbjct: 232 INRGKTPIHPKPFYFSAEKDGI---GVEIALQWNDGYAENIYCFTNNIPQRDGGTHLAGF 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R A+TR +  Y E      K  ++   DD     V ++SV + +P+F+ QTK KLVS + 
Sbjct: 289 RGAMTRTLNNYMENEGYTKKSKVATSGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEV 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451
           +  VE+ + +    YL++NP +   ++  +I+ +  R   RK R    RK A+    LPG
Sbjct: 349 KSAVESLMNEYLQTYLLENPNDVKIIVSKIIDAARAREAARKAREMTRRKGALDLGGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++ 
Sbjct: 409 KLADCQERDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSA 468

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ 
Sbjct: 469 EVGTLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKI 600
           ++++  PPL+++ +G +  Y  D+E   + 
Sbjct: 529 YVYIAQPPLYKVKKGKQEQYIKDDEAMAEF 558



 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ ++   K  +  + I R+KGLGEM   QL ET MD N R +L+V I   +       
Sbjct: 722 FEQAIDWLMKESRRGLLIQRYKGLGEMNPEQLWETTMDPNSRRMLKVSIKDAV----AAD 777

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG + + R  FI+  A    ++ 
Sbjct: 778 QLFTTLMGDEVEPRRDFIESNALRA-NLD 805


>gi|306815948|ref|ZP_07450086.1| DNA gyrase subunit B [Escherichia coli NC101]
 gi|305850344|gb|EFM50801.1| DNA gyrase subunit B [Escherichia coli NC101]
          Length = 804

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLLDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|2160009|dbj|BAA20341.1| DNA gyrase subunit B [Escherichia coli]
          Length = 804

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 227/574 (39%), Positives = 347/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ  NR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGGNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD  +  +LRV +   +       
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPERCRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|293413153|ref|ZP_06655819.1| hypothetical protein ECEG_04465 [Escherichia coli B354]
 gi|291468286|gb|EFF10781.1| hypothetical protein ECEG_04465 [Escherichia coli B354]
          Length = 804

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|218551229|ref|YP_002385021.1| DNA gyrase subunit B [Escherichia fergusonii ATCC 35469]
 gi|218358771|emb|CAQ91428.1| DNA gyrase, subunit B [Escherichia fergusonii ATCC 35469]
 gi|323965760|gb|EGB61211.1| hypothetical protein ERJG_02832 [Escherichia coli M863]
 gi|323975234|gb|EGB70338.1| hypothetical protein ERFG_03936 [Escherichia coli TW10509]
 gi|324111596|gb|EGC05577.1| hypothetical protein ERIG_03892 [Escherichia fergusonii B253]
 gi|325499506|gb|EGC97365.1| DNA gyrase subunit B [Escherichia fergusonii ECD227]
 gi|327250842|gb|EGE62544.1| DNA gyrase, B subunit [Escherichia coli STEC_7v]
          Length = 804

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|218702548|ref|YP_002410177.1| DNA gyrase subunit B [Escherichia coli IAI39]
 gi|218372534|emb|CAR20409.1| DNA gyrase, subunit B [Escherichia coli IAI39]
          Length = 804

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|323959764|gb|EGB55414.1| hypothetical protein ERGG_03715 [Escherichia coli H489]
          Length = 804

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FERALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|320185536|gb|EFW60302.1| DNA gyrase subunit B [Shigella flexneri CDC 796-83]
          Length = 804

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 LLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|293407339|ref|ZP_06651261.1| gyrB [Escherichia coli FVEC1412]
 gi|298383080|ref|ZP_06992675.1| DNA gyrase subunit B [Escherichia coli FVEC1302]
 gi|300896028|ref|ZP_07114589.1| DNA gyrase, B subunit [Escherichia coli MS 198-1]
 gi|291425630|gb|EFE98666.1| gyrB [Escherichia coli FVEC1412]
 gi|298276916|gb|EFI18434.1| DNA gyrase subunit B [Escherichia coli FVEC1302]
 gi|300360088|gb|EFJ75958.1| DNA gyrase, B subunit [Escherichia coli MS 198-1]
          Length = 804

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|66043818|ref|YP_233659.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. syringae
           B728a]
 gi|302189665|ref|ZP_07266338.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. syringae
           642]
 gi|63254525|gb|AAY35621.1| Gram negative topoisomerase IV, subunit B [Pseudomonas syringae pv.
           syringae B728a]
          Length = 634

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 245/656 (37%), Positives = 368/656 (56%), Gaps = 29/656 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            AN SAS +Y+A +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A
Sbjct: 1   MANPSAS-SYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHA 56

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             ++V L  +  L V D+GRG+PV+ HP+    S +E+ILT LHAGGKF N  Y+ SGGL
Sbjct: 57  RSVQVILHADNSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213
           HGVGISVVNALS ++ V V R    +   F+ G   + L     V +   GT + F PDP
Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVVGTVGKRNTGTSVYFAPDP 175

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     F  +RL  + ++KA L   +   +             EK E+++  GL++YL
Sbjct: 176 KYFDTP-KFSVSRLKHVLKAKAVLCPGLLVSFEDK-------SSGEKVEWHYEDGLRSYL 227

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHE 331
           Q  +     +  E F G        +  V+WA+ W  E  +    SY N I T +GGTH 
Sbjct: 228 QDSVTEFLRLPDEPFCGSFTGN---KEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHV 284

Query: 332 SGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           +GLR  L   ++++ E      R + +  +D+      +LS+ ++EP+F+GQTK +L S 
Sbjct: 285 NGLRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSR 344

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
           +A   V   ++D F  +L  +     +L +  I  +  RL+    ++V RK   +   LP
Sbjct: 345 EAAAFVSGVVKDAFSLWLNTHSELGLQLADLAINNAGRRLK--ASKKVERKRITQGPALP 402

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC+      +ELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN       ++  +
Sbjct: 403 GKLADCAGQDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLAS 462

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           Q++ ++  A+G    +      LRY K+ I+ DAD DG HIA+LL   F Q    L++  
Sbjct: 463 QEVHNIAVAIGVDPGAADI-SQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAG 521

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLK 629
           H+++  PPL+RI  G +  YA DE  +  IL+    +  +GK +++RFKGLGEM   QL+
Sbjct: 522 HVYVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLR 581

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDV 684
           ET MD N R L+++ ++        T + ++ L+  K A +R  +++ + +  + +
Sbjct: 582 ETTMDPNTRRLVQLTLDD----FAATSEMMDMLLAKKRAGDRKSWLESKGNLAEVL 633


>gi|301510004|ref|ZP_07235241.1| DNA topoisomerase IV subunit B [Acinetobacter baumannii AB058]
          Length = 627

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 257/645 (39%), Positives = 372/645 (57%), Gaps = 28/645 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y A S+ +L GL+PVR RPGMY   TD    +HL  EVIDNA+DE +AG+A+ I V++ 
Sbjct: 3   QYTAQSLEVLSGLDPVRRRPGMY---TDTSRPNHLAQEVIDNAVDEALAGHADKICVTVY 59

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G L+V DNGRG+PV+ HP++  +S +EIILT LHAGGKF    Y+ SGGLHGVGISVV
Sbjct: 60  KDGSLSVEDNGRGMPVDIHPEY-GQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISVV 118

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGDKA 220
           NALS  + V V RQ  ++   F +G P++PL   E    +   GT + F P+ K F    
Sbjct: 119 NALSTRVEVEVQRQGNLYQMAFEQGEPVAPLAVLEGKAPKRATGTTVRFWPEAKYFDSP- 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L    ++KA L+  +K  +             EK E+ F  GL  YL  +L++R
Sbjct: 178 KFALKALKHNLKAKAVLAAGLKITYIDQ-------INDEKIEWQFENGLVDYLMDELQDR 230

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVAL 338
            ++ +  F    +     R   E+AI W  E  E    SY N I T +GGTH +GLR  +
Sbjct: 231 EILPNPAFVSSGQAD---RAACEFAICWNVEGGEQVQESYVNLIPTAQGGTHVNGLRSGV 287

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           T  ++++ EL     R + + ++D+      ILS+  +EP+F+GQTK +L S +A   V 
Sbjct: 288 TEALREFCELRNLLPRNLKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREAANIVL 347

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
           N  +D F  +L Q+   A +L E  I ++  RL+    ++V RK  +    LPGKLADC 
Sbjct: 348 NIAKDAFALWLNQHAEIAMQLAEMAISKAGRRLK--AAKKVERKKIVSGPALPGKLADCV 405

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +ELFIVEGDSAGGSAKQAR+++ QA++P+RGKILN     S+++   Q++ D+ 
Sbjct: 406 GQTREESELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLAYQEVHDIA 465

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S     +LRY K+ I+ DAD DG HIA+LL   F +    L+E+ HL++  P
Sbjct: 466 IAIGVDPGSDDL-SELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAMP 524

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PLFRI  G    YA D+E  + IL+  K  G    +I+RFKGLGEM A QL+ET MD N 
Sbjct: 525 PLFRIDIGKDVHYALDDEELETILKNVK--GNKNPQITRFKGLGEMNAIQLRETTMDPNT 582

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           R L++++++    +          L   +A +R ++++++ +  D
Sbjct: 583 RRLVQLDLDDAHLTAGLLDKL---LAKKRAADRKQWLEQKGNLAD 624


>gi|294660440|ref|NP_853202.2| DNA topoisomerase IV subunit B [Mycoplasma gallisepticum str.
           R(low)]
 gi|33860191|sp|Q59526|PARE_MYCGA RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B; Short=TopIIB
 gi|284812100|gb|AAP56770.2| DNA topoisomerase IV subunit B [Mycoplasma gallisepticum str.
           R(low)]
 gi|284930684|gb|ADC30623.1| DNA topoisomerase IV subunit B [Mycoplasma gallisepticum str.
           R(high)]
          Length = 633

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 236/647 (36%), Positives = 354/647 (54%), Gaps = 28/647 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY+   I++L+GLEPVR RPGMYIG TD + LHHL  E+ DNA+DE + G AN IEV  
Sbjct: 3   SNYNEKHIKVLKGLEPVRKRPGMYIGSTDTRGLHHLVWELFDNAVDEALNGSANKIEVVH 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G + V DNGRGIPV  +    N ST++ + T LHAGGKFD+  Y++SGGLHGVG SV
Sbjct: 63  KKDGSIIVTDNGRGIPVGKNL-ATNLSTVDTVYTVLHAGGKFDDQAYKVSGGLHGVGASV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS +L VTV R   ++   +  G  +    KK     K GT + F PDP IF +   
Sbjct: 122 VNALSRKLIVTVHRDGGMYESIYQDGGKIIQPLKKVGNSTKHGTIVQFWPDPTIFKN-IQ 180

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F+   + +     ++L   +K  +  +            + F    G+  YL+   EN+ 
Sbjct: 181 FNPYMIKERLHESSFLFKGLKIVFVDE------NNPELSQTFIAKDGILEYLKYVNENKK 234

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
            IS  I      +K    G  ++      E+  I S+ N++ T EGG+HE+G + A+   
Sbjct: 235 SISKIIPFKGDYEKIVVDGCFQYTD---NESELIISFANSVKTSEGGSHENGFKQAMLET 291

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397
           I  Y++  +  N +       DL      +LSV + E    + GQTK KL + + +  V 
Sbjct: 292 INDYSKKYKLINNKDKGFDWSDLKEGLSVVLSVQVPEKIIAYEGQTKNKLFTQEVKVAVA 351

Query: 398 NALRDPFDHYLVQNPIEATKLL--EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
             L     ++L +N  +A +L+    +I+ ++E  ++ K+     K+A  +  L GKL  
Sbjct: 352 KILTQQLFYFLEENQADAKQLIERFKLIKEAKEAAKKAKENTKKLKSAKSERVLYGKLTP 411

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
             Q      E+F+VEGDSAGG+AK  R++  QA+LPLRGK++NV  +  + +  N++I+ 
Sbjct: 412 AQQKNPLQNEIFLVEGDSAGGTAKSGRDKRFQAILPLRGKVVNVEKSRLQDLLKNEEILS 471

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++  LGC   + +  ++L+Y K+IIMTDAD DGAHI  LLLTFFY+ M +LIEQ  +++ 
Sbjct: 472 IISCLGCGIGNNFNIKNLKYHKIIIMTDADTDGAHIQVLLLTFFYRYMKELIEQGKVYIA 531

Query: 576 SPPLFRI--TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
             PL++I      KS +A D+    ++  ++     G  E+ R+KGLGEM + QL  T M
Sbjct: 532 LAPLYKISAKNSNKSAFAWDDYQLDELRTKY-----GSYEVQRYKGLGEMNSEQLWTTTM 586

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           D +KR L++V I     +    +  ++ LMG  A  R  +I E   F
Sbjct: 587 DPSKRQLIQVSI----QNAAQAERKVSILMGDDASIRKNWINENVDF 629


>gi|295095337|emb|CBK84427.1| DNA gyrase subunit B [Enterobacter cloacae subsp. cloacae NCTC
           9394]
          Length = 803

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 228/566 (40%), Positives = 348/566 (61%), Gaps = 18/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVTDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+  I  Q +  G+P +PL       +K GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYQHGVPDAPLAVTGDT-DKTGTMVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  D++   + 
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDDAMDQY 555



 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ LE   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 718 FEQALEWLVKESRRGLSIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAI----AAD 773

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 774 QLFTTLMGDAVEPRRAFIEENALKAANID 802


>gi|28627817|gb|AAN75469.1| topoisomerase II subunit B [Streptomyces roseochromogenes subsp.
           oscitans]
          Length = 702

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 235/701 (33%), Positives = 345/701 (49%), Gaps = 51/701 (7%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86
             +P   A +      +Y A  + +LEGLE VR RPGMYIG +D + L H   E+IDNA+
Sbjct: 2   STLPAPAAGSRPQDGSDYTARHLMVLEGLEAVRKRPGMYIGSSDSRGLMHCLWEIIDNAV 61

Query: 87  DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146
           DE +AG  + IEV L  +G + V DNGRGIPV+  P+    S +EI  T LHAGGKF   
Sbjct: 62  DEALAGACDYIEVILHDDGSVEVTDNGRGIPVDTEPR-TGLSGVEIAYTKLHAGGKFGGG 120

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------- 199
           +Y  SGGLHGVG SVVNALS  L V V R     +  F RG P +               
Sbjct: 121 SYAASGGLHGVGASVVNALSARLDVEVDRHGRTHAISFRRGTPGTYTGPGPDAPFTPAQG 180

Query: 200 --------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
                   +++ GTR+ +  D + F   A      L +  +  A+L   +      +  +
Sbjct: 181 LRQTTKIPKSRTGTRVRYWADRQSFLKDAKLSLENLHQRARQTAFLVPGLTIVVRDEFGL 240

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KK 295
            E     E E F F GG+  + +    +  +     F+G+                   +
Sbjct: 241 GEGGSKGE-ESFRFDGGISEFCEFLASDTPVCDILRFSGQGTFKETVPVLDEHGQMTPTE 299

Query: 296 GTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA 354
            T    V+ A+ W         S+ N I T +GGTH +G   A+ + + +     +  R 
Sbjct: 300 VTRELGVDVALRWGTGYDTTVRSFVNIIATPKGGTHVAGFEQAVGKTLNEVLRAKKLLRV 359

Query: 355 ISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
                  DD +     +++V + EP+F GQTK  L +  A+R V N +      +L    
Sbjct: 360 AEDDIAKDDALEGLTAVVTVRLAEPQFEGQTKEVLGTSAARRIVNNVISKELKAFLTSTK 419

Query: 413 IEATKLLEWVIER----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFI 468
            +A +    V+E+    +  R+  R+ ++  RK+A+    LP KLADC  +    +ELFI
Sbjct: 420 RDAAQQARVVMEKAVAAARTRIAARQHKDAQRKSALESSSLPAKLADCRSDDVDRSELFI 479

Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528
           VEGDSA G+AK ARN   QA+LP+RGKILNV  +    +  N +   ++Q +G  +   +
Sbjct: 480 VEGDSALGTAKLARNSEFQALLPIRGKILNVQRSSVSDMLKNAECGAIIQVIGAGSGRTF 539

Query: 529 REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-----T 583
             +  RY K+I+MTDADVDG+HI +LLLT F++ M  ++E   +F   PPL RI      
Sbjct: 540 DIDTARYRKIIMMTDADVDGSHIRTLLLTLFHRYMRPMVEAGRVFAAVPPLHRIELVQPR 599

Query: 584 QGTKSV-YAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           +G +   Y + +   +  L EF+  G + K  + R+KGLGEM A QL ET MD   RTL 
Sbjct: 600 KGQERYVYTYSDRELRDKLMEFQSKGIRYKDSVQRYKGLGEMDADQLAETTMDPRHRTLR 659

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           R+ +      L+  +   + LMG     R +FI   A+ +D
Sbjct: 660 RINLTD----LEAAEGVFDLLMGNDVAPRKEFITSSAATLD 696


>gi|315296897|gb|EFU56185.1| DNA gyrase, B subunit [Escherichia coli MS 16-3]
          Length = 804

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|302132290|ref|ZP_07258280.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 634

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 243/655 (37%), Positives = 365/655 (55%), Gaps = 27/655 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            AN SAS +Y+A +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A
Sbjct: 1   MANPSAS-SYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHA 56

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             ++V L  +  L V D+GRG+PV+ HP+    S +E+ILT LHAGGKF N  Y+ SGGL
Sbjct: 57  RSVQVILHADNSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213
           HGVGISVVNALS ++ V V R    +   F+ G   + L     V +   GT + F PDP
Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVIGTVGKRNTGTSVYFAPDP 175

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     F  +RL  + ++KA L   +   +             EK E+++  GL++YL
Sbjct: 176 KYFDTP-KFSVSRLKHVLKAKAVLCPGLLVSFEDK-------SSGEKIEWHYEDGLRSYL 227

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHE 331
           Q  +     +  E F G        +  V+WA+ W  E  +    SY N I T +GGTH 
Sbjct: 228 QDSVTEFLRLPDEPFCGSFSGN---KEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHV 284

Query: 332 SGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           +GLR  L   ++++ E      R + +  +D+      +LS+ ++EP+F+GQTK +L S 
Sbjct: 285 NGLRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSR 344

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
           +A   V   ++D F  +L  +     +L +  I  +  RL+    ++V RK   +   LP
Sbjct: 345 EAAAFVSGVVKDAFSLWLNTHSELGLQLADLAINNAGRRLK--ASKKVERKRVTQGPALP 402

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC+      +ELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN       ++  +
Sbjct: 403 GKLADCAGQDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLAS 462

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           Q++ ++  A+G    +      LRY K+ I+ DAD DG HIA+LL   F Q    L++  
Sbjct: 463 QEVHNIAVAIGVDPGAADI-SQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAG 521

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLK 629
           H+++  PPL+RI  G +  YA DE  +  IL+    +  +GK +++RFKGLGEM   QL+
Sbjct: 522 HVYVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLR 581

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           ET MD N R L+++ ++    + +        L   +A +R  +++ + +  + +
Sbjct: 582 ETTMDPNTRRLVQLTLDDYAATSEMMDML---LAKKRAGDRKSWLESKGNLAEVL 633


>gi|218707345|ref|YP_002414864.1| DNA gyrase subunit B [Escherichia coli UMN026]
 gi|218434442|emb|CAR15370.1| DNA gyrase, subunit B [Escherichia coli UMN026]
          Length = 804

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 228/574 (39%), Positives = 347/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E         F++ GG+K +++   +N
Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEN-------HFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|320193755|gb|EFW68388.1| DNA gyrase subunit B [Escherichia coli WV_060327]
          Length = 804

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|26250440|ref|NP_756480.1| DNA gyrase subunit B [Escherichia coli CFT073]
 gi|91213221|ref|YP_543207.1| DNA gyrase subunit B [Escherichia coli UTI89]
 gi|237703499|ref|ZP_04533980.1| subunit B [Escherichia sp. 3_2_53FAA]
 gi|26110870|gb|AAN83054.1|AE016769_169 DNA gyrase subunit B [Escherichia coli CFT073]
 gi|91074795|gb|ABE09676.1| DNA gyrase subunit B [Escherichia coli UTI89]
 gi|226902763|gb|EEH89022.1| subunit B [Escherichia sp. 3_2_53FAA]
          Length = 805

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 3   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 62

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 63  TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 121

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + F P  + F + 
Sbjct: 122 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 181 TEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 233

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 234 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 351 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 531 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 564



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 720 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 775

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 776 QLFTTLMGDAVEPRRAFIEENALKAANID 804


>gi|283787601|ref|YP_003367466.1| DNA gyrase subunit B [Citrobacter rodentium ICC168]
 gi|282951055|emb|CBG90733.1| DNA gyrase subunit B [Citrobacter rodentium ICC168]
          Length = 804

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 230/574 (40%), Positives = 349/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R N I  Q +  G+P +PL       +K GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQRDNKIHRQIYVHGVPQAPLAVTGDT-DKTGTMVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLKDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|166712481|ref|ZP_02243688.1| DNA topoisomerase IV subunit B [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 629

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 242/642 (37%), Positives = 362/642 (56%), Gaps = 25/642 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y+A+ I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AG+A  IEV+L  
Sbjct: 5   YNAADIEVLSGLDPVKRRPGMY---TDTARPNHLAQEVIDNSVDEALAGHAKQIEVTLYK 61

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G   V D+GRG+PV+ HP+      +E+ILT LHAGGKF+N  Y  SGGLHGVG+SVVN
Sbjct: 62  DGSCEVSDDGRGMPVDIHPE-EKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVSVVN 120

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222
           ALS ++ + + R+ +    +F  G   S LE    V +   GTR+ F  DPK F     F
Sbjct: 121 ALSTKVELFIKREGSEHRMEFRDGNAASKLEVVGTVGKKNTGTRLRFWADPKYFDTP-KF 179

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L  + ++KA L   +      +          E++ +YF  GL+ YL+ ++    +
Sbjct: 180 NVRALRHLLRAKAVLCPGLTVKLHDE-------ATGEQDSWYFENGLRDYLKGEMAEHEM 232

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRG 341
           + +++F G  +K       V+WA AW  E      SY N I T + GTH +GLR  LT  
Sbjct: 233 LPADLFVGSLKKDTEI---VDWAAAWVPEGELVQESYVNLIPTAQHGTHVNGLRSGLTDA 289

Query: 342 IKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
           ++++ +      R + +  +D+      +LS+ + +P+F+GQTK +L S  A   +E A 
Sbjct: 290 LREFCDFRNLLPRGVKLAPEDVWDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAA 349

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
            D F  YL QN     K+ +  I+R+  RL+   ++++ RK   +   LPGKLADC    
Sbjct: 350 HDAFSLYLNQNVEIGEKIAQIAIDRASARLK--TEKQIVRKKVTQGPALPGKLADCISQD 407

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              TELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN     S  +  ++++ +L  A+
Sbjct: 408 LSRTELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASEEVHNLAIAI 467

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           GC          LRY KV+I+ DAD DG HIA+LL   F Q    L+   H+F+  PPLF
Sbjct: 468 GCDPGKDDI-TGLRYGKVVILADADSDGLHIATLLTALFLQHFPALVAAGHVFVAMPPLF 526

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           R+  G +  YA DEE K  +L++  +   KG+I ++RFKGLGEM   QL+E+ +  + R 
Sbjct: 527 RVDVGKQVFYALDEEEKTTLLDKVAREKMKGQISVTRFKGLGEMNPQQLRESTIHPDTRR 586

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           L+++ I+    +          L   +A +R ++++ +    
Sbjct: 587 LVQLTIDDGEQTRSLMDML---LAKKRASDRKQWLETKGDLA 625


>gi|82779228|ref|YP_405577.1| DNA gyrase subunit B [Shigella dysenteriae Sd197]
 gi|81243376|gb|ABB64086.1| DNA gyrase subunit B [Shigella dysenteriae Sd197]
 gi|281180753|dbj|BAI57083.1| DNA gyrase subunit B [Escherichia coli SE15]
 gi|324008035|gb|EGB77254.1| DNA gyrase, B subunit [Escherichia coli MS 57-2]
          Length = 804

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|209396545|ref|YP_002273225.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4115]
 gi|217325601|ref|ZP_03441685.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. TW14588]
 gi|254038916|ref|ZP_04872968.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|209157945|gb|ACI35378.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4115]
 gi|217321822|gb|EEC30246.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. TW14588]
 gi|226838881|gb|EEH70908.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
          Length = 805

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 3   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 62

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 63  TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 121

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + F P  + F + 
Sbjct: 122 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 181 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 233

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 234 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 351 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 531 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 564



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 720 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 775

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 776 QLFTTLMGDAVEPRRAFIEENALKAANID 804


>gi|290547|gb|AAA62050.1| DNA gyrase, subunit B [Escherichia coli]
          Length = 804

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAPRRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRXFIEENALKAANID 803


>gi|33152015|ref|NP_873368.1| DNA topoisomerase IV subunit B [Haemophilus ducreyi 35000HP]
 gi|33148237|gb|AAP95757.1| DNA topoisomerase IV subunit B [Haemophilus ducreyi 35000HP]
          Length = 638

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 249/650 (38%), Positives = 367/650 (56%), Gaps = 29/650 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y A  I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE ++G+A  I+V L
Sbjct: 4   KRYGADQITVLKDLEPVQLRPGMY---TDTSRPNHLAQEVIDNSVDEALSGFATQIDVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V+DNGRG+PV+ H      S +E+ILT LHAGGKF N  Y  SGGLHGVGISV
Sbjct: 61  HSDNSLEVIDNGRGMPVDIHS-TEQISGVELILTKLHAGGKFSNKNYTFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS+++ + + R   I+   F+ G     L       + + GT + F P+PK F    
Sbjct: 120 VNALSEQVKIKIKRDGNIYQIAFANGAKTEELHVVGSCAKKQTGTSVHFYPNPKYFDSPR 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L  ++   ++             +E +Y+  GL  YL   L   
Sbjct: 180 -FSVSRLRHLLRAKAVLCPKLTINFTDHINHN-------QESWYYEDGLADYLSEALAET 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             + +  F G    +      V WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 ESLPNPPFIGNVTSETE---AVSWALTWLPEGGELLAESYVNLIPTAQGGTHVNGLRNGL 288

Query: 339 TRGIKKYAELTQNK-RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
            + I ++ E+     + I + +DD+      +LS+ ++EP+FAGQTK +L S  A   V+
Sbjct: 289 LKAIVEFCEIHNLLLKGIKLTADDVWNRCAYVLSLKMQEPQFAGQTKERLSSRQASSYVD 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
           N L++ F  +L QN      + E  I  ++ RLR    ++V RK  +    LPGKLADC+
Sbjct: 349 NTLKNAFSLWLNQNVQVGKSIAEMAIASAQSRLR--AAKKVVRKKLVSGPALPGKLADCT 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN     S+++  +Q++ D+ 
Sbjct: 407 AQDLTRTELFLVEGDSAGGSAKQARDKEYQAILPLRGKILNTWEVSSDQVLASQEVHDIA 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    +  R ++LRY K+ I+ DAD DG HIA+LL   F +   +L+ Q H+++  P
Sbjct: 467 VAMGIDPDND-RLDELRYGKICILADADSDGLHIATLLCALFLRHFPNLVRQGHVYVAMP 525

Query: 578 PLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PL+RI  G  +  YA DE  K+ IL     H K K  + RFKGLGEM  SQL+ET MD +
Sbjct: 526 PLYRIDIGKDEVHYALDEVEKEAILARL-AHKKAKPNVQRFKGLGEMNPSQLRETTMDPS 584

Query: 637 KRTLLRVEINKDLNSLK----DTQDSINKLMGTK-ADERFKFIQERASFI 681
            R L+++ ++      +    +T   ++ L+  K +++R +++Q+R +  
Sbjct: 585 TRRLVQLVLDDSEEDQQDDALNTFAIMDMLLAKKRSEDRKQWLQKRGNEA 634


>gi|119714278|ref|YP_921243.1| DNA gyrase subunit B [Nocardioides sp. JS614]
 gi|119534939|gb|ABL79556.1| DNA gyrase subunit B [Nocardioides sp. JS614]
          Length = 711

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 241/728 (33%), Positives = 370/728 (50%), Gaps = 61/728 (8%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           M+D+        P ++         + E  D           +YDAS+I++LEGLE VR 
Sbjct: 1   MSDE-------TPIENPAEGGSGTAAAEATDRRPNGV-----DYDASAIQVLEGLEAVRK 48

Query: 61  RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           RPGMYIG T E+ LHHL  E++DNA+DE +AGY + I ++L  +G + V DNGRGIP   
Sbjct: 49  RPGMYIGSTGERGLHHLIWEIVDNAVDEALAGYCDRIVLTLLADGGIRVEDNGRGIPTGT 108

Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
            P       L + LT LHAGGKF    Y++SGGLHGVG+SVVNALS  L   V  +  ++
Sbjct: 109 APGQE-LPALTLALTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSTRLVAEVKNRGHLW 167

Query: 181 SQKFSRGIPLSPLE--KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLS 238
            Q FS G+P   LE  +  +     GT IT+   P IF          +    +  A+L+
Sbjct: 168 RQSFSAGVPDGELEQVRPVEPDEGTGTTITYWASPDIFETTTH-SLETITSRIREYAFLN 226

Query: 239 GRVKTCWSCDK--------EIAEKYGIPEK---------------------EEFYFPGGL 269
             ++     ++         + +    P+                      + F +  GL
Sbjct: 227 KGLEIVVRDERPAAAEIVDAVEDDTVDPDHRGGIDDAGHDAIKRGEGGALEQIFKYDRGL 286

Query: 270 KTYLQTKLENRSLISSEIFTGKTE--KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
             Y++     ++  +  +   + E  +   +  ++E A+ W       + ++ NTI T E
Sbjct: 287 IDYVEHLNRRKTAANPTVIAFEAETPESVENHMSLEVAMQWNTSFSESVHTFANTINTHE 346

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTHE G R ALT  +  +       +        DD+      I+S+ + EP+F GQTK
Sbjct: 347 GGTHEEGFRAALTSLVNNWGFEWGLMKKPEDRVSGDDIREGLTAIISIKLGEPQFEGQTK 406

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE--VNRKT 442
           TKL + +A+  V+  + D    +L QNP E   ++      +  R+  RK R+   +RK 
Sbjct: 407 TKLGNTEAKGFVQRLVNDQLGAWLEQNPAEGRDIVRKAQAAASARIAARKARDLARSRKG 466

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
            +    LPGKL+DC        E+FIVEGDSAGGSA+Q R+   QA+LP+RGKILNV  A
Sbjct: 467 LLGGGGLPGKLSDCQSTNPAECEVFIVEGDSAGGSARQGRDPRIQAILPIRGKILNVEKA 526

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
             +K+ +NQ++  ++ ALG   + ++  E LRY KV++M DADVDG HI +LLLT  ++ 
Sbjct: 527 RIDKVLSNQEVQSIISALGTGIQDEFDIEKLRYHKVVLMADADVDGHHINTLLLTLLFRF 586

Query: 563 MYDLIEQKHLFLISPPLFRITQGT--KSVYAHDEEHKQKILEEFKKHGKGKIE---ISRF 617
           M  LIE  ++++  PPL+R+      +  + + +  +  +L   ++ GK   +   + R+
Sbjct: 587 MKPLIEGGYVYMAQPPLYRLRWNKPHEHEFVYSDAERDALLRAGQEAGKKLPKENPVQRY 646

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           KGLGEM A +L ET MD  +R +L+V ++          +  + LMG   ++R  FIQ  
Sbjct: 647 KGLGEMNAKELWETTMDPEQRLMLQVTLDD----AAHADEIFSILMGEDVEQRRSFIQRN 702

Query: 678 ASFIDDVG 685
           A  +  + 
Sbjct: 703 AKDVRFLD 710


>gi|330960110|gb|EGH60370.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 634

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 243/655 (37%), Positives = 365/655 (55%), Gaps = 27/655 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            AN SAS +Y+A +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A
Sbjct: 1   MANPSAS-SYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHA 56

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             ++V L  +  L V D+GRG+PV+ HP+    S +E+ILT LHAGGKF N  Y+ SGGL
Sbjct: 57  RSVQVILHADNSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213
           HGVGISVVNALS ++ V V R    +   F+ G   + L     V +   GT + F PDP
Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVIGTVGKRNTGTSVYFAPDP 175

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     F  +RL  + ++KA L   +   +             EK E+++  GL++YL
Sbjct: 176 KYFDTP-KFSVSRLKHVLKAKAVLCPGLLVSFEDK-------ATGEKVEWHYEDGLRSYL 227

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHE 331
           Q  +     +  E F G        +  V+WA+ W  E  +    SY N I T +GGTH 
Sbjct: 228 QDSVTEFLRLPDEPFCGSFAGN---KEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHV 284

Query: 332 SGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           +GLR  L   ++++ E      R + +  +D+      +LS+ ++EP+F+GQTK +L S 
Sbjct: 285 NGLRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSR 344

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
           +A   V   ++D F  +L  +     +L +  I  +  RL+    ++V RK   +   LP
Sbjct: 345 EAAAFVSGVVKDAFSLWLNTHSELGLQLADLAINNAGRRLK--ASKKVERKRITQGPALP 402

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC+      +ELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN       ++  +
Sbjct: 403 GKLADCAGQDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLAS 462

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           Q++ ++  A+G    +      LRY K+ I+ DAD DG HIA+LL   F Q    L++  
Sbjct: 463 QEVHNIAVAIGVDPGAADI-SQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAG 521

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLK 629
           H+++  PPL+RI  G +  YA DE  +  IL+    +  +GK +++RFKGLGEM   QL+
Sbjct: 522 HVYVAMPPLYRIDLGKEIYYALDESERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLR 581

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           ET MD N R L+++ ++    + +        L   +A +R  +++ + +  + +
Sbjct: 582 ETTMDPNTRRLVQLTLDDYAATSEMMDML---LAKKRAGDRKSWLESKGNLAEVL 633


>gi|237798258|ref|ZP_04586719.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021110|gb|EGI01167.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 634

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 243/655 (37%), Positives = 366/655 (55%), Gaps = 27/655 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            AN SAS +Y+A +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A
Sbjct: 1   MANPSAS-SYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHA 56

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             ++V L  +  L V D+GRG+PV+ HP+    S +E+ILT LHAGGKF N  Y+ SGGL
Sbjct: 57  RSVQVILHADNSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213
           HGVGISVVNALS ++ V V R    +   F+ G   + L     V +   GT + F PDP
Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVIGTVGKRNTGTSVYFAPDP 175

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     F  +RL  + ++KA L   +   +             EK E+++  GL++YL
Sbjct: 176 KYFDTP-KFSVSRLKHVLKAKAVLCPGLLVSFEDK-------SSGEKVEWHYEDGLRSYL 227

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHE 331
           Q  + +   +  E F G        +  V+WA+ W  E  +    SY N I T +GGTH 
Sbjct: 228 QDSVTDFLRLPDEPFCGSFAGN---KEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHV 284

Query: 332 SGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           +GLR  L   ++++ E      R + +  +D+      +LS+ ++EP+F+GQTK +L S 
Sbjct: 285 NGLRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSR 344

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
           +A   V   ++D F  +L  +     +L +  I  +  RL+    ++V RK   +   LP
Sbjct: 345 EAAAFVSGVVKDAFSLWLNTHSELGLQLADLAINNAGRRLK--ASKKVERKRITQGPALP 402

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC+      +ELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN       ++  +
Sbjct: 403 GKLADCAGQDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLAS 462

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           Q++ ++  A+G    +      LRY K+ I+ DAD DG HIA+LL   F Q    L++  
Sbjct: 463 QEVHNIAVAIGVDPGAADI-SQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAG 521

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLK 629
           H+++  PPL+RI  G +  YA DE  +  IL+    +  +GK +++RFKGLGEM   QL+
Sbjct: 522 HVYVAMPPLYRIDLGKEIYYALDESERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLR 581

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           ET MD N R L+++ ++    + +        L   +A +R  +++ + +  + +
Sbjct: 582 ETTMDPNTRRLVQLTLDDYAATSEMMDML---LAKKRAGDRKSWLESKGNLAEVL 633


>gi|1617217|emb|CAA69665.1| subunit B of DNA gyrase [Salmonella enterica subsp. enterica
           serovar Typhimurium]
          Length = 804

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 229/574 (39%), Positives = 347/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVTDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R   I  Q +  G+P +PL       +K GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWPSHETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ + Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSFQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|289672548|ref|ZP_06493438.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. syringae
           FF5]
 gi|330939840|gb|EGH43074.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 634

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 240/654 (36%), Positives = 365/654 (55%), Gaps = 28/654 (4%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
              ++ +Y+A +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A  
Sbjct: 2   ATPSASSYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHARS 58

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           ++V L  +  L V D+GRG+PV+ HP+    S +E+ILT LHAGGKF N  Y+ SGGLHG
Sbjct: 59  VQVILHADNSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGLHG 117

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKI 215
           VGISVVNALS ++ V V R    +   F+ G   + L     V +   GT + F PDPK 
Sbjct: 118 VGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVVGTVGKRNTGTSVYFAPDPKY 177

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     F  +RL  + ++KA L   +   +             EK E+++  GL++YLQ 
Sbjct: 178 FDTP-KFSVSRLKHVLKAKAVLCPGLLVSFEDK-------SSGEKVEWHYEDGLRSYLQD 229

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESG 333
            +     +  E F G        +  V+WA+ W  E  +    SY N I T +GGTH +G
Sbjct: 230 SVTEFLRLPDEPFCGSFTGN---KEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHVNG 286

Query: 334 LRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           LR  L   ++++ E      R + +  +D+      +LS+ ++EP+F+GQTK +L S +A
Sbjct: 287 LRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREA 346

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
              V   ++D F  +L  +     +L +  I  +  RL+    ++V RK   +   LPGK
Sbjct: 347 AAFVSGVVKDAFSLWLNTHSELGLQLADLAINNAGRRLK--ASKKVERKRITQGPALPGK 404

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC+      +ELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN       ++  +Q+
Sbjct: 405 LADCAGQDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQE 464

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           + ++  A+G    +      LRY K+ I+ DAD DG HIA+LL   F Q    L++  H+
Sbjct: 465 VHNIAVAIGVDPGAADI-SQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHV 523

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKET 631
           ++  PPL+RI  G +  YA DE  +  IL+    +  +GK +++RFKGLGEM   QL+ET
Sbjct: 524 YVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRET 583

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDV 684
            MD N R L+++ ++        T + ++ L+  K A +R  +++ + +  + +
Sbjct: 584 TMDPNTRRLVQLTLDD----FAATSEMMDMLLAKKRAGDRKSWLESKGNLAEVL 633


>gi|284931406|gb|ADC31344.1| DNA topoisomerase IV subunit B [Mycoplasma gallisepticum str. F]
          Length = 633

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 236/647 (36%), Positives = 353/647 (54%), Gaps = 28/647 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY+   I++L+GLEPVR RPGMYIG TD + LHHL  E+ DNA+DE + G AN IEV  
Sbjct: 3   SNYNEKHIKVLKGLEPVRKRPGMYIGSTDTRGLHHLVWELFDNAVDEALNGSANKIEVVH 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G + V DNGRGIPV  +    N ST++ + T LHAGGKFD+  Y++SGGLHGVG SV
Sbjct: 63  KKDGSIIVTDNGRGIPVGKNL-ATNLSTVDTVYTVLHAGGKFDDQAYKVSGGLHGVGASV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS +L V V R   ++   +  G  +    KK     K GT I F PDP IF +   
Sbjct: 122 VNALSRKLIVNVHRDGGMYESIYQDGGKIIQPLKKMGSSTKHGTIIQFWPDPTIFKN-IQ 180

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F+   + +     ++L   +K  +  +            + F    G+  YL+   EN+ 
Sbjct: 181 FNPYMIKERLHESSFLFKGLKIVFVDE------NNPELSQTFIAKDGILEYLKYVNENKK 234

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
            IS  I      +K    G  ++      E+  I S+ N++ T EGG+HE+G + A+   
Sbjct: 235 TISKIIPFKGDYEKIVVDGCFQYTD---NESELIISFANSVKTSEGGSHENGFKQAMLET 291

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397
           I  Y++  +  N +       DL      +LSV + E    + GQTK KL + + +  V 
Sbjct: 292 INDYSKKYKLINNKDKGFDWSDLKEGLSVVLSVQVPEKIIAYEGQTKNKLFTQEVKVAVA 351

Query: 398 NALRDPFDHYLVQNPIEATKLL--EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
             L     ++L +N  +A +L+    +I+ ++E  ++ K+     K+A  +  L GKL  
Sbjct: 352 KILTQQLFYFLEENQADAKQLIERFKLIKEAKEAAKKAKENTKKLKSAKSERVLYGKLTP 411

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
             Q      E+F+VEGDSAGG+AK  R++  QA+LPLRGK++NV  +  + +  N++I+ 
Sbjct: 412 AQQKNPLQNEIFLVEGDSAGGTAKSGRDKRFQAILPLRGKVVNVEKSRLQDLLKNEEILS 471

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++  LGC   + +  ++L+Y K+IIMTDAD DGAHI  LLLTFFY+ M +LIEQ  +++ 
Sbjct: 472 IISCLGCGIGNNFNIKNLKYHKIIIMTDADTDGAHIQVLLLTFFYRYMKELIEQGKVYIA 531

Query: 576 SPPLFRI--TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
             PL++I      KS +A D+    ++  ++     G  E+ R+KGLGEM + QL  T M
Sbjct: 532 LAPLYKISAKNSNKSAFAWDDYQLDELRVKY-----GSYEVQRYKGLGEMNSEQLWTTTM 586

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           D +KR L++V I   +      +  ++ LMG  A  R  +I E   F
Sbjct: 587 DPSKRQLIQVSIQNAV----QAERKVSILMGDDASIRKNWINENVDF 629


>gi|262373790|ref|ZP_06067068.1| DNA topoisomerase IV, B subunit [Acinetobacter junii SH205]
 gi|262311543|gb|EEY92629.1| DNA topoisomerase IV, B subunit [Acinetobacter junii SH205]
          Length = 627

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 260/645 (40%), Positives = 376/645 (58%), Gaps = 28/645 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y A S+ +L GL+PVR RPGMY   TD    +HL  EVIDNA+DE +AG+A+ I V++ 
Sbjct: 3   QYTAQSLEVLSGLDPVRRRPGMY---TDTSRPNHLAQEVIDNAVDEALAGHADQICVTVY 59

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G L+V DNGRG+PV+ HP++  +S +EIILT LHAGGKF    Y+ SGGLHGVGISVV
Sbjct: 60  EDGSLSVEDNGRGMPVDIHPEY-GQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISVV 118

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGDKA 220
           NALS  + V V RQ  ++   F +G P++PL   E    +   GT + F P+ K F    
Sbjct: 119 NALSTRVEVAVQRQGNLYQMAFEQGEPVAPLSVLEGKVAKRATGTTVRFWPEAKYFDSP- 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L    ++KA L+  +K  +  DK   EK        + F  GL  YL  +LE+R
Sbjct: 178 KFALKALKHNLKAKAVLAAGLKIIY-DDKINNEKIE------WQFENGLVDYLMDELEDR 230

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVAL 338
            ++ +  F    + +   R   E+AI W  E  E    SY N I T +GGTH +GLR  +
Sbjct: 231 EILPAPAFVSSGQAE---RAACEFAICWNVEGGEQIQESYVNLIPTAQGGTHVNGLRSGV 287

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           T  ++++ EL     R + + ++D+      ILS+  +EP+F+GQTK +L S +A   V 
Sbjct: 288 TEALREFCELRNLLPRNMKLSAEDVWDGVNFILSLKFQEPQFSGQTKERLSSREASNIVL 347

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
           N  +D F  +L Q+   AT+L E  I ++  RL+    ++V RK  +    LPGKLADC 
Sbjct: 348 NIAKDAFALWLNQHAEIATQLAEMAIAKAGRRLK--AAKKVERKKIVAGPALPGKLADCV 405

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +ELFIVEGDSAGGSAKQAR+++ QA++P+RGKILN     S+++  +Q++ D+ 
Sbjct: 406 GLTREDSELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIA 465

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S     +LRY K+ I+ DAD DG HIA+LL   F +    L+E  HLF+  P
Sbjct: 466 IAIGVDPGSDDL-SELRYGKICILADADSDGLHIATLLCALFVKHFPALVEDGHLFVAMP 524

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G    YA D++  + IL++ K  G    +I+RFKGLGEM ASQL+ET MD N 
Sbjct: 525 PLYRIDIGKDVHYALDDDELEAILKKVK--GNKNPQITRFKGLGEMNASQLRETTMDPNT 582

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           R L++++++    +          L   +A +R  +++++ +  D
Sbjct: 583 RRLVQLDLDDAHLTAGLLDKL---LAKKRAADRKHWLEQKGNLAD 624


>gi|88705315|ref|ZP_01103026.1| DNA topoisomerase IV subunit B; gyrase B [Congregibacter litoralis
           KT71]
 gi|88700405|gb|EAQ97513.1| DNA topoisomerase IV subunit B; gyrase B [Congregibacter litoralis
           KT71]
          Length = 628

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 253/649 (38%), Positives = 369/649 (56%), Gaps = 28/649 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y + SI +L GLEPVR RPGMY   TD    +HL  E+IDN++DE +AG+A  I+V L
Sbjct: 2   SDYSSDSIEVLTGLEPVRKRPGMY---TDTTRPNHLAQEIIDNSVDEALAGFARQIDVIL 58

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G L+  D+GRG+PV+ HP+   K  +E+IL+TLHAGGKF +  Y+ SGGLHGVG+SV
Sbjct: 59  HTDGSLSACDDGRGMPVDMHPEQ-KKPGVEVILSTLHAGGKFSSKNYQFSGGLHGVGVSV 117

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS +L VT+ R   +    F+ G   S L+  +   +   GT + F PDP+ F    
Sbjct: 118 VNALSKQLTVTIRRDGQVHEMSFAGGEKTSELKVIDSCGKRNTGTMVRFTPDPQYFDSIN 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F   RL+ + ++KA L   ++  +  +K+        EKEE+++  GL  YL +  E  
Sbjct: 178 -FSVPRLMHVLRAKAVLCPGLRVTFLDEKKN-------EKEEWFYEDGLTDYLLSATEGF 229

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             + +  FTG           V+WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 230 PTVPAAPFTGSFSGSTE---AVDWAVQWLPEGGELITESYVNLIPTAQGGTHVNGLRTGL 286

Query: 339 TRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E  +   R + +  DD+      +LS  + +P+F+GQTK +L S +A   V 
Sbjct: 287 LDAMREFCELRSLLPRGVKLAPDDIWERCSYVLSSKLEDPQFSGQTKERLSSREAAAFVS 346

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
              +D F  +L Q+  +A  L E  I  ++ RLR    ++V RK       LPGKLADCS
Sbjct: 347 GVAKDAFSLWLNQHTGDAEALAELCINTAQRRLR--SAKKVVRKKVSAGPALPGKLADCS 404

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR+R  QA+LPLRGKILN     S++I  +Q++ ++ 
Sbjct: 405 GEDISRTELFLVEGDSAGGSAKQARDRETQAILPLRGKILNTWEVDSQEILASQEVHNIS 464

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG           LRY KV I+ DAD DG HIA+L+   F +    L+   H+++  P
Sbjct: 465 VALGIDPADDDL-TGLRYGKVCILADADSDGLHIATLICALFVRHFRALVSAGHVYVAMP 523

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDAN 636
           PL+RI  G +  YA DE  KQ IL+  +   K GK+ + RFKGLGEM   QL+ET M A+
Sbjct: 524 PLYRIDIGKEVFYALDEGEKQGILDRIEAEKKRGKVNVQRFKGLGEMNPLQLRETTMSAD 583

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDV 684
            R L+++ +     +  +T + ++ L+  K A +R  +++ +    + +
Sbjct: 584 TRRLVQLRLE----AGDETNEVLDMLLAKKRAGDRKSWLETKGDLAEVL 628


>gi|285017938|ref|YP_003375649.1| DNA topoisomerase iv subunit b protein [Xanthomonas albilineans GPE
           PC73]
 gi|283473156|emb|CBA15662.1| probable dna topoisomerase iv subunit b protein [Xanthomonas
           albilineans]
          Length = 629

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 241/646 (37%), Positives = 371/646 (57%), Gaps = 26/646 (4%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y+A+ I +L GL+PV+ RPGMY   TD    +HL  EVIDNA+DE +AG+A  IEV+L  
Sbjct: 5   YNAADIEVLSGLDPVKRRPGMY---TDTSRPNHLAQEVIDNAVDEALAGHARHIEVTLYK 61

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G   V D+GRG+PV+ HP+    S +E+ILT LHAGGKF +  Y  SGGLHGVG+SVVN
Sbjct: 62  DGSCEVSDDGRGMPVDIHPE-EKISGVELILTRLHAGGKFSDRNYTFSGGLHGVGVSVVN 120

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222
           ALS ++ + + R+   +   F+ G   S LE    V +   GTR+ F PDP  F     F
Sbjct: 121 ALSKQVQLFIRREGNEYRMAFADGHAASKLEIVGSVGKKNTGTRLRFLPDPNYFDTP-KF 179

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L  + ++KA L   +      +          E + ++F  GL+ YL+ +L  R L
Sbjct: 180 AVRALRHLLRAKAVLCPGLTVKLHDE-------ATDEHDTWHFEDGLRDYLRGELAEREL 232

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTRG 341
           + +++F G  +K    R  V+WA AW  + +    SY N I T + GTH +GLR  LT  
Sbjct: 233 LPADLFVGSLKKD---REIVDWAAAWVVDGDLVQESYVNLIPTAQHGTHVNGLRSGLTDA 289

Query: 342 IKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
           ++++ +      R + +  +D+      +LS+ + +P+F+GQTK +L S  A   +E A 
Sbjct: 290 LREFCDFRNLLPRGVKLAPEDVWDRVAFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAA 349

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
            D F  +L QN    T++ +  I+R+  RL+   ++++ RK   +   LPGKLADC    
Sbjct: 350 HDAFSLWLNQNVETGTRIAQIAIDRASARLK--TEKQITRKKVTQGPALPGKLADCISQD 407

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              TELF+VEGDSAGGSA+QAR++  QA+LPLRGKILN     S  +  ++++ +L  A+
Sbjct: 408 LSRTELFLVEGDSAGGSARQARDKDFQAILPLRGKILNTWEVASGSVLASEEVHNLAIAI 467

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           GC    +   + LRY KV+I+ DAD DG HIA+LL   F +    L++  H+F+  PPLF
Sbjct: 468 GCDPGKEEI-DGLRYGKVVILADADSDGLHIATLLTALFLRHFPSLVKAGHVFVAMPPLF 526

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           R+  G +  YA DEE K+ +LE+  +   KG++ ++RFKGLGEM   QL+E+ +  + R 
Sbjct: 527 RVDVGKQVFYALDEEEKRSLLEKIAREKIKGQVSVTRFKGLGEMNPQQLRESTIHPDTRR 586

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           L+++ +++  ++          L   +A +R ++++ +      + 
Sbjct: 587 LVQLTVDEGDDTPALMDML---LAKKRASDRKQWLETKGDLAS-LD 628


>gi|331009741|gb|EGH89797.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 634

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 245/656 (37%), Positives = 369/656 (56%), Gaps = 29/656 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            AN SAS +Y+A +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A
Sbjct: 1   MANPSAS-SYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHA 56

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             ++V L  +  L V D+GRG+PV+ HP+    S +E+ILT LHAGGKF N  Y+ SGGL
Sbjct: 57  RSVQVILHADNSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213
           HGVGISVVNALS ++ V V R    +   F+ G   + L     V +   GT + F PDP
Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVIGTVGKRNTGTSVYFAPDP 175

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     F  +RL  + ++KA L   +   +             EK E+++  GL++YL
Sbjct: 176 KYFDTP-KFSVSRLKHVPKAKAVLCPGLLVSFEDK-------STNEKVEWHYEDGLRSYL 227

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHE 331
           Q  + +   +  E F G        +  V+WA+ W  E  +    SY N I T +GGTH 
Sbjct: 228 QDSVSDFLRLPDEPFCGSFAGN---KEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHV 284

Query: 332 SGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           +GLR  L   ++++ E      R + +  +D+      +LS+ ++EP+F+GQTK +L S 
Sbjct: 285 NGLRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSR 344

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
           +A   V   ++D F  +L  +     +L +  I  +  RL+    ++V RK   +   LP
Sbjct: 345 EAAAFVSGVVKDAFSLWLNTHSELGLQLADLAINNAGRRLK--ASKKVERKRITQGPALP 402

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC+      +ELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN       ++  +
Sbjct: 403 GKLADCAGQDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLAS 462

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           Q++ ++  A+G    +      LRY K+ I+ DAD DG HIA+LL   F Q    L++  
Sbjct: 463 QEVHNIAVAIGVDPGAADI-SQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAG 521

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLK 629
           H+++  PPL+RI  G +  YA DE  +  IL+    +  +GK +++RFKGLGEM   QL+
Sbjct: 522 HVYVAMPPLYRIDLGKEIYYALDESERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLR 581

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDV 684
           ET MD N R L+++ ++        T + ++ L+  K A +R  +++ + +  + +
Sbjct: 582 ETTMDPNTRRLVQLTLDD----FAATSEMMDMLLAKKRAGDRKSWLESKGNLAEVL 633


>gi|28872077|ref|NP_794696.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213967903|ref|ZP_03396049.1| DNA topoisomerase IV, B subunit [Pseudomonas syringae pv. tomato
           T1]
 gi|301384422|ref|ZP_07232840.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062286|ref|ZP_07253827.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. tomato
           K40]
 gi|28855331|gb|AAO58391.1| DNA topoisomerase IV, B subunit [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213927246|gb|EEB60795.1| DNA topoisomerase IV, B subunit [Pseudomonas syringae pv. tomato
           T1]
 gi|330963729|gb|EGH63989.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. actinidiae
           str. M302091]
 gi|331014588|gb|EGH94644.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 634

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 243/655 (37%), Positives = 365/655 (55%), Gaps = 27/655 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            AN SAS +Y+A +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A
Sbjct: 1   MANPSAS-SYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHA 56

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             ++V L  +  L V D+GRG+PV+ HP+    S +E+ILT LHAGGKF N  Y+ SGGL
Sbjct: 57  RSVQVILHADNSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213
           HGVGISVVNALS ++ V V R    +   F+ G   + L     V +   GT + F PDP
Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVIGTVGKRNTGTSVYFAPDP 175

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     F  +RL  + ++KA L   +   +             EK E+++  GL++YL
Sbjct: 176 KYFDTP-KFSVSRLKHVLKAKAVLCPGLLVSFEDK-------SSGEKIEWHYEDGLRSYL 227

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHE 331
           Q  +     +  E F G        +  V+WA+ W  E  +    SY N I T +GGTH 
Sbjct: 228 QDSVTEFLRLPDEPFCGSFAGN---KEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHV 284

Query: 332 SGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           +GLR  L   ++++ E      R + +  +D+      +LS+ ++EP+F+GQTK +L S 
Sbjct: 285 NGLRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSR 344

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
           +A   V   ++D F  +L  +     +L +  I  +  RL+    ++V RK   +   LP
Sbjct: 345 EAAAFVSGVVKDAFSLWLNTHSELGLQLADLAINNAGRRLK--ASKKVERKRITQGPALP 402

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC+      +ELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN       ++  +
Sbjct: 403 GKLADCAGQDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLAS 462

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           Q++ ++  A+G    +      LRY K+ I+ DAD DG HIA+LL   F Q    L++  
Sbjct: 463 QEVHNIAVAIGVDPGAADI-SQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAG 521

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLK 629
           H+++  PPL+RI  G +  YA DE  +  IL+    +  +GK +++RFKGLGEM   QL+
Sbjct: 522 HVYVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLR 581

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           ET MD N R L+++ ++    + +        L   +A +R  +++ + +  + +
Sbjct: 582 ETTMDPNTRRLVQLTLDDYAATSEMMDML---LAKKRAGDRKSWLESKGNLAEVL 633


>gi|148244667|ref|YP_001219361.1| DNA topoisomerase IV subunit B [Candidatus Vesicomyosocius okutanii
           HA]
 gi|146326494|dbj|BAF61637.1| topoisomerase IV subunit B [Candidatus Vesicomyosocius okutanii HA]
          Length = 626

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 251/645 (38%), Positives = 365/645 (56%), Gaps = 24/645 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           ++YD+SSI +L GLEPVR  PGMY   T+ +  +HL  EVIDN++DE IAG+A+ I V L
Sbjct: 2   NSYDSSSIEVLTGLEPVRKHPGMY---TETECPNHLAQEVIDNSVDEAIAGFASKINVVL 58

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             N  L+V D+GRG+PV+ HPK   KS +E+ILT LHAGGKF N  Y+ SGGLHGVGISV
Sbjct: 59  YKNNSLSVEDDGRGMPVDIHPK-EGKSGVEVILTKLHAGGKFSNDLYQFSGGLHGVGISV 117

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPDPKIFGDKA 220
           VNALS  + + + R        FS G   + L+   KV     GT + F+PD   F D  
Sbjct: 118 VNALSTLVEIWIKRDAKEHHITFSNGSKKTELKVTRKVSKYNTGTIVKFKPDA-RFFDNI 176

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F A +L    +SKA L   ++  +  +          + +++ +  GLK YL   L+  
Sbjct: 177 KFSATKLHNNLRSKAVLCPDLEINFYNE-------INEKTDKWIYKEGLKDYLSKSLDGL 229

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
             + ++ F     K    +            N    SY N I T   GTH +GLR  LT 
Sbjct: 230 DCLPTDPFVVN-YKTNEQQLNCSVTWTQYNTNIIAESYVNLIPTI-SGTHVNGLRSGLTE 287

Query: 341 GIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
            +K++ E      + I +  DD+      +LS+ I +P+F+GQTK +L S +    V N 
Sbjct: 288 ALKEFCEFRNLIPKNIKLTPDDVWQKISYVLSIKIMDPQFSGQTKKRLSSRECASFVANI 347

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
           ++D F  +L Q+   A ++ +  I  ++ +L+    ++V RK       LPGKL+DC   
Sbjct: 348 VKDTFSIWLNQHTSMAKEIAQLAIINAQIKLKTN--KKVIRKKIFSGPILPGKLSDCIST 405

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
             + TE+F+VEGDSAGGSAKQARN+  QA+LPLRGKILN     SE+I  N++I D+  A
Sbjct: 406 DLNQTEVFLVEGDSAGGSAKQARNKEYQAILPLRGKILNTWEINSEQILANKEIHDISIA 465

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           +G    S+    +LRY K+ I+ DAD DGAHIA+L+ T F +    L+++ H+F+  PPL
Sbjct: 466 IGLEPNSEDL-SNLRYGKICILADADSDGAHIATLICTLFMKHFPKLVQEGHIFVAMPPL 524

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKR 638
           +RI  G +  YA +   +  I+ + K   K  KI++ RFKGLGEM  SQL+ET M +N R
Sbjct: 525 YRIDAGKQVYYALNNNERDTIIRKVKNENKRVKIQVQRFKGLGEMNPSQLRETTMLSNTR 584

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
            L+++  N  L   K     ++K    +A +R K+++E  + +D+
Sbjct: 585 HLIQLTSNNPLQIFKTMDMLLSK---KRAADRKKWLEENGN-LDN 625


>gi|256390961|ref|YP_003112525.1| DNA topoisomerase IV subunit B [Catenulispora acidiphila DSM 44928]
 gi|256357187|gb|ACU70684.1| DNA topoisomerase (ATP-hydrolyzing) [Catenulispora acidiphila DSM
           44928]
          Length = 709

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 235/707 (33%), Positives = 343/707 (48%), Gaps = 68/707 (9%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
              +     +Y A  + +LEGL+ VR RPGMYIG  D + L H   E+IDN++DE +AG+
Sbjct: 7   PAPSADKDGSYTARHLLVLEGLDAVRKRPGMYIGSNDGRGLMHCLWEIIDNSVDEALAGF 66

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
            + IE+ L  +G   V D GRGIPV+  PK    S +E+++T LHAGGKF   +Y  SGG
Sbjct: 67  GDKIEIILHKDGSAEVRDTGRGIPVDVEPK-TGLSGVEVVMTMLHAGGKFGGGSYAASGG 125

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP--------------LSPLEKKEKV 199
           LHGVG SVVNALS  + + V R  T+ +  F RGIP               S L K  KV
Sbjct: 126 LHGVGASVVNALSSRVDMEVDRAGTVHAMSFQRGIPGVFADEGPEAKFKAESGLRKVGKV 185

Query: 200 RN-------------KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
                            GTR  F PD +IF   A F    L    +  A+L   +     
Sbjct: 186 SRALVPKSADGRRAAPTGTRTRFWPDRQIFLKDAEFVLEDLHARARQTAFLVPGLTIRVV 245

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE------------- 293
            +++  +       E F + GG+  +++    +R +  +  FTG  +             
Sbjct: 246 DERDGKQDE-----EIFSYAGGISEFVEFLAPDRPITDTLRFTGSGKFTETVPVLDEQGH 300

Query: 294 ---KKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
                      V+ A+ W  E    I S+ N I T +GGTH  G    L +   +    T
Sbjct: 301 MTPADIERELFVDVALRWGTEYDTVIRSFVNIIATPKGGTHLVGFGKGLLKAANEQLRAT 360

Query: 350 QNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
           +  +     +I +D+      +++V + EP+F GQTK  L +  A R V   + + F  +
Sbjct: 361 KLLKVNDDDVIREDVFEGLTAVVTVRLAEPQFEGQTKEVLGTPAANRIVTRVVDNAFKEF 420

Query: 408 ----LVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAH 462
                  +   A  +LE +   +  R+  R+ +E   RK A+    LP KLADC  +   
Sbjct: 421 LTSAKRNDKPMARGVLEKIANAARTRITARQHKEAQRRKNALETSALPAKLADCRSDDVD 480

Query: 463 GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
            +E+FI+EGDSA GSAK ARN   QA+LP+RGKILNV  +    +  N +   ++Q +G 
Sbjct: 481 RSEMFIIEGDSAMGSAKAARNSEFQALLPIRGKILNVQKSSIADMLKNTECAAIIQVVGA 540

Query: 523 RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI 582
            +   +  +  RY KVI+M DADVDG+HI  LLLT F++ M  ++E   ++   PPL RI
Sbjct: 541 GSGRSFDIDQARYGKVILMADADVDGSHIRCLLLTLFHRYMRPMLEAGRVYAAVPPLHRI 600

Query: 583 ------TQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDA 635
                     + +Y + +   ++ + E  K GK  K  I R+KGLGEM A QL ET MD 
Sbjct: 601 EVIGAGRAKNEFIYTYSDNEMRRTVAELLKKGKRIKEPIQRYKGLGEMDADQLAETTMDP 660

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
             RTL R+ +       +    + + LMG     R +FI   A+ +D
Sbjct: 661 RHRTLRRITV----ADGESADKAFDLLMGNDVAPRREFIINSAAVLD 703


>gi|323144110|ref|ZP_08078750.1| DNA topoisomerase IV, B subunit [Succinatimonas hippei YIT 12066]
 gi|322416125|gb|EFY06819.1| DNA topoisomerase IV, B subunit [Succinatimonas hippei YIT 12066]
          Length = 638

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 234/657 (35%), Positives = 359/657 (54%), Gaps = 28/657 (4%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +   + Y  +SI +LEGLEPVR RPGMY   TD +  +HL  EVIDN++DE +AG+A  
Sbjct: 2   TKEQINEYTGASIEVLEGLEPVRRRPGMY---TDTQNPNHLGMEVIDNSVDEALAGFATK 58

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV+L  +G L V+DNGRG+PV+ HP       +E+I + LHAGGKF N  Y  SGGLHG
Sbjct: 59  IEVNLYKDGSLEVIDNGRGMPVDMHP-TEKIPAIELIFSRLHAGGKFSNDNYAFSGGLHG 117

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKI 215
           VG+SVVNALS  L   V+R   ++S  +S G  +  L+      +++ GT I F PD + 
Sbjct: 118 VGVSVVNALSKRLEAKVSRDGQVYSIVYSGGEKIEDLKVIGTCPKSRTGTAIRFWPD-EK 176

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           + D   F+   L  + ++KA L   +   +  +    E       EE++  G L +YL T
Sbjct: 177 YFDGIAFNVKALTHLLRAKAVLCKGLSVVFKDENSGKE-------EEWHHEGSLSSYLLT 229

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE---ITSYCNTILTDEGGTHES 332
           ++++  ++    F G   +       VEWA+ W  ++ +     S+ N I T EGGTH +
Sbjct: 230 QMQDAEIVPDPPFDGSFSQ---PESEVEWAVTWNVDSADKLLHESFVNLIPTPEGGTHVN 286

Query: 333 GLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           G R  L   ++++ +      R + +++DD+      +L+V I++P+FAGQTK KL S  
Sbjct: 287 GFRSGLLIALREFCDLHALLPRNLKLVADDVWAHCSFVLAVKIQDPQFAGQTKEKLSSRQ 346

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
               VE  ++D    Y   +      + + +IE ++ R      + V RK ++R  +LPG
Sbjct: 347 CASLVEGIVKDAAALYFNSHTEIGKAVAKLIIESAKRRE--SAAKVVERKKSVRGPQLPG 404

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL DC+       ELFIVEGDSAGGSA+QAR+ S QA+LPLRGKILN     +     ++
Sbjct: 405 KLVDCTSTDPSRGELFIVEGDSAGGSARQARDSSYQAILPLRGKILNTWEVSANTALASE 464

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  +  A+G    S     +LRY+K+ I+ DAD DG HI +LL   F +    L+   H
Sbjct: 465 EIRAISVAMGLDPDSDDL-TNLRYDKICILADADSDGLHIGTLLCALFVKHFPALVRAGH 523

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG--KIEISRFKGLGEMLASQLK 629
           +++  PPL+R+  G    YA D+E      ++F K G     I+I RFKGLGEM   QL+
Sbjct: 524 VYVACPPLYRLDCGKIKEYALDDEELALKQKQFLKRGIKAENIKIQRFKGLGEMNPEQLR 583

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDVG 685
           ET +  + R L+++ +    +        ++ L+  K A +R +++++     + + 
Sbjct: 584 ETTLSPDSRRLMQLTLEDLGDGPVYA--LMDMLLSKKRAADRRQWLEKNGDKAELID 638


>gi|239502848|ref|ZP_04662158.1| DNA topoisomerase IV subunit B [Acinetobacter baumannii AB900]
          Length = 627

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 258/645 (40%), Positives = 374/645 (57%), Gaps = 28/645 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y A S+ +L GL+PVR RPGMY   TD    +HL  EVIDNA+DE +AG+A+ I V++ 
Sbjct: 3   QYTAQSLEVLSGLDPVRRRPGMY---TDTSRPNHLAQEVIDNAVDEALAGHADKICVTVY 59

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G L+V DNGRG+PV+ HP++  +S +EIILT LHAGGKF    Y+ SGGLHGVGISVV
Sbjct: 60  KDGSLSVEDNGRGMPVDIHPEY-GQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISVV 118

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGDKA 220
           NALS  + V V RQ  ++   F +G P++PL   E    +   GT + F P+ K F    
Sbjct: 119 NALSTRVEVEVQRQGNLYQMAFEQGEPVAPLAVLEGKAPKRATGTTVRFWPEAKYFDSP- 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L    ++KA L+  +K  +             EK E+ F  GL  YL  +L++R
Sbjct: 178 KFALKALKHNLKAKAVLAAGLKITYIDQ-------INDEKIEWQFENGLVDYLMDELQDR 230

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVAL 338
            ++ + +F    +     R   E+AI W  E  E    SY N I T +GGTH +GLR  +
Sbjct: 231 EILPNPVFVSSGQAD---RAACEFAICWNVEGGEQVQESYVNLIPTAQGGTHVNGLRSGV 287

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           T  ++++ EL     R + + ++D+      ILS+  +EP+F+GQTK +L S +A   V 
Sbjct: 288 TEALREFCELRNLLPRNLKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREAANIVL 347

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
           N  +D F  +L Q+   A +L E  I ++  RL+    ++V RK  +    LPGKLADC 
Sbjct: 348 NIAKDAFALWLNQHAEIAMQLAEMAISKAGRRLK--AAKKVERKKIVSGPALPGKLADCV 405

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +ELFIVEGDSAGGSAKQAR+++ QA++P+RGKILN     S+++  +Q++ D+ 
Sbjct: 406 GQTREESELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIA 465

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S     +LRY K+ I+ DAD DG HIA+LL   F +    L+E+ HLF+  P
Sbjct: 466 IAIGVDPGSDDL-SELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLFVAMP 524

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PLFRI  G    YA D+E  + IL+  K  G    +I+RFKGLGEM A QL+ET MD N 
Sbjct: 525 PLFRIDIGKDVHYALDDEELETILKNVK--GNKNPQITRFKGLGEMNAIQLRETTMDPNT 582

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           R L++++++    +          L   +A +R ++++++ +  D
Sbjct: 583 RRLVQLDLDDAHLTAGLLDKL---LAKKRAADRKQWLEQKGNLAD 624


>gi|260550166|ref|ZP_05824379.1| topoisomerase IV subunit B [Acinetobacter sp. RUH2624]
 gi|260406694|gb|EEX00174.1| topoisomerase IV subunit B [Acinetobacter sp. RUH2624]
          Length = 627

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 258/645 (40%), Positives = 373/645 (57%), Gaps = 28/645 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y A S+ +L GL+PVR RPGMY   TD    +HL  EVIDNA+DE +AG+A+ I V++ 
Sbjct: 3   QYTAQSLEVLSGLDPVRRRPGMY---TDTSRPNHLAQEVIDNAVDEALAGHADKICVTVY 59

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G L+V DNGRG+PV+ HP++  +S +EIILT LHAGGKF    Y+ SGGLHGVGISVV
Sbjct: 60  KDGSLSVEDNGRGMPVDIHPEY-GQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISVV 118

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGDKA 220
           NALS  + V V RQ  ++   F +G P++PL   E    +   GT + F P+ K F    
Sbjct: 119 NALSTRVEVEVQRQGNLYQMAFEQGEPVAPLAVLEGKAPKRATGTTVRFWPEAKYFDSP- 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L    ++KA L+  +K  +             EK E+ F  GL  YL  +L++R
Sbjct: 178 KFALKALKHNLKAKAVLAAGLKITYIDQ-------INDEKIEWQFENGLVDYLMDELQDR 230

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVAL 338
            ++ +  F    +     R   E+AI W  E  E    SY N I T +GGTH +GLR  +
Sbjct: 231 EILPNPAFVSSGQAD---RAACEFAICWNVEGGEQVQESYVNLIPTAQGGTHVNGLRSGV 287

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           T  ++++ EL     R + + ++D+      ILS+  +EP+F+GQTK +L S +A   V 
Sbjct: 288 TEALREFCELRNLLPRNLKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREASNIVL 347

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
           N  +D F  +L Q+   A +L E  I ++  RL+    ++V RK  +    LPGKLADC 
Sbjct: 348 NIAKDAFALWLNQHAEIAMQLAEMAISKAGRRLK--AAKKVERKKIVSGPALPGKLADCV 405

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +ELFIVEGDSAGGSAKQAR+++ QA++P+RGKILN     S+++  +Q++ D+ 
Sbjct: 406 GQTREESELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIA 465

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S     +LRY K+ I+ DAD DG HIA+LL   F +    L+E+ HLF+  P
Sbjct: 466 IAIGVDPGSDDL-SELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLFVAMP 524

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PLFRI  G    YA D+E  + IL+  K  G    +I+RFKGLGEM A QL+ET MD N 
Sbjct: 525 PLFRIDIGKDVHYALDDEELETILKNVK--GNKNPQITRFKGLGEMNAIQLRETTMDPNT 582

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           R L++++++    +          L   +A +R ++++++ +  D
Sbjct: 583 RRLVQLDLDDAHLTAGLLDKL---LAKKRAADRKQWLEQKGNLAD 624


>gi|300956295|ref|ZP_07168597.1| DNA gyrase, B subunit [Escherichia coli MS 175-1]
 gi|300316882|gb|EFJ66666.1| DNA gyrase, B subunit [Escherichia coli MS 175-1]
          Length = 804

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 228/574 (39%), Positives = 347/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ + Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSYQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|148380730|ref|YP_001255271.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium botulinum
           A str. ATCC 3502]
 gi|153932289|ref|YP_001385014.1| DNA topoisomerase IV subunit B [Clostridium botulinum A str. ATCC
           19397]
 gi|153937688|ref|YP_001388484.1| DNA topoisomerase IV subunit B [Clostridium botulinum A str. Hall]
 gi|170761352|ref|YP_001788088.1| DNA topoisomerase IV subunit B [Clostridium botulinum A3 str. Loch
           Maree]
 gi|148290214|emb|CAL84333.1| DNA gyrase subunit B [Clostridium botulinum A str. ATCC 3502]
 gi|152928333|gb|ABS33833.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium botulinum
           A str. ATCC 19397]
 gi|152933602|gb|ABS39101.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium botulinum
           A str. Hall]
 gi|169408341|gb|ACA56752.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium botulinum
           A3 str. Loch Maree]
          Length = 651

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 227/660 (34%), Positives = 354/660 (53%), Gaps = 36/660 (5%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +YD + +  LE LEPVR+RPGMYIG T  K LHH   E++DNA+DE+  GY +  EV 
Sbjct: 8   TKDYDVTKLTSLEKLEPVRVRPGMYIGSTGIKGLHHCIWEILDNAIDEISNGYGDTAEVI 67

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L+ +  +TVVDNGRGIP   HP    KS +E++ T LH GGKF+NS Y+ SGGLHGVG S
Sbjct: 68  LNKDKSVTVVDNGRGIPTGIHP-IKKKSGVEMVFTELHTGGKFNNSIYKTSGGLHGVGAS 126

Query: 161 VVNALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTRITF 209
           VVNALS+   V V + + I+ Q+F             G P++ L+      +K GTR+TF
Sbjct: 127 VVNALSEWTEVEVYQNDKIYKQRFEYALDKKLNKKMPGTPVTKLKIVGDT-DKTGTRVTF 185

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +PD ++F     F    + +  Q  A+ +  +      +++       PE +E++   GL
Sbjct: 186 KPDKEVFST-IDFKFDVIDERLQELAFQNKGITLKLIDNRK-----EEPEIKEYHSERGL 239

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
             ++    E+++ I +     + EK+    +   E    + + +   I SY N I T E 
Sbjct: 240 LDFIDYLNESKTPIHNPAVLFEGEKEINNLKMEGEICFQFTDSSTENIASYVNNIPTTEA 299

Query: 328 GTHESGLRVALTRGIKK--YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTHE+G +  +TR  K+         ++      DDL      I+ + I  P F GQTKT
Sbjct: 300 GTHETGFKTGMTRAFKEGAKKLSLIKEKDKEFDGDDLREGITAIVRIKISNPVFEGQTKT 359

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444
           KL + +A   + +     F  ++  N   +T ++   +  +  R + +K  E   +K   
Sbjct: 360 KLGNNEAYTMMNDLAYSKFLEWIEDNKEVSTLIINNALAAAARREKIKKINEAEKKKIGK 419

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               L GK+A C+   ++ TE  +VEGDSAGGSAKQAR+R  Q ++P +GKI+N      
Sbjct: 420 GLAPLAGKIAVCTLRDSNVTEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKI 479

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           E +  ++++     A+G      Y+EEDL+Y+K+II++DADVDG HI +L +T+ Y+ M 
Sbjct: 480 ENVLGSEELKIFNTAIGTGVLDNYKEEDLKYDKIIILSDADVDGYHIRTLWMTYIYRYMK 539

Query: 565 DLIEQKHLFLISPPLFRI----TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
            L+   HL++  PPL+++     +G KSVY +++E  +K  ++  +       I R+KGL
Sbjct: 540 SLVANGHLYIAMPPLYKVYKKDKKGEKSVYCYNDEELEKAKKQIGR----GYLIQRYKGL 595

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GEM   QL ET ++   RTL R+ I          +  ++ LMG   + R  ++ + A F
Sbjct: 596 GEMNPEQLWETTLNPETRTLQRITIED----AAKAEKMVSLLMGDVVEPRKNYLYKYAEF 651


>gi|261867418|ref|YP_003255340.1| DNA gyrase subunit B [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412750|gb|ACX82121.1| DNA gyrase, B subunit [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 806

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 229/570 (40%), Positives = 350/570 (61%), Gaps = 19/570 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           + +  + Y A+SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY +
Sbjct: 2   STNTPETYGANSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCD 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V D+GRGIPV+ HP+    S  E+I+T LHAGGKFD+++Y++SGGLH
Sbjct: 62  DIVVTIHSDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD+L +T+ RQ  +  Q +S G P +PL    +   + GT + F P P I
Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGKVHEQFYSLGDPQAPLAVIGETT-QTGTTVRFWPSPTI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   F+   L K  +  ++L+  V      ++         +++ F++ GG++ +++ 
Sbjct: 180 FTNI-EFEYDILAKRLRELSFLNSGVSIRLIDER-------TDKQDHFHYKGGIQAFVEY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
               ++ I  + F    EK G     VE A+ W +     I  + N I   +GGTH +G 
Sbjct: 232 INRGKTPIHPKPFYFSAEKDGI---GVEIALQWNDGYAENIYCFTNNIPQRDGGTHLAGF 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R A+TR +  Y E      K  ++   DD     V ++SV + +P+F+ QTK KLVS + 
Sbjct: 289 RGAMTRTLNNYMENEGYTKKSKVATSGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEV 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451
           +  VE+ + +    YL++NP +   ++  +I+ +  R   RK R    RK A+    LPG
Sbjct: 349 KSAVESLMNEYLQTYLLENPNDVKIIVTKIIDAARAREAARKAREMTRRKGALDLGGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++ 
Sbjct: 409 KLADCQERDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSA 468

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ 
Sbjct: 469 EVGTLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKI 600
           ++++  PPL+++ +G +  Y  D+E   + 
Sbjct: 529 YVYIAQPPLYKVKKGKQEQYIKDDEAMAEF 558



 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ +E   +  +  + I R+KGLGEM   QL ET MD N R +L+V I   +       
Sbjct: 722 FEQAIEWLMRESRRGLMIQRYKGLGEMNPEQLWETTMDPNIRRMLKVSIKDAV----AAD 777

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG + + R  FI+  A    ++ 
Sbjct: 778 QLFTTLMGDEVEPRRDFIESNALRA-NLD 805


>gi|168180821|ref|ZP_02615485.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium botulinum
           NCTC 2916]
 gi|182668281|gb|EDT80260.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium botulinum
           NCTC 2916]
          Length = 651

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 227/660 (34%), Positives = 353/660 (53%), Gaps = 36/660 (5%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +YD + +  LE LEPVR+RPGMYIG T  K LHH   E++DNA+DE+  GY +  EV 
Sbjct: 8   TKDYDVTKLTSLEKLEPVRVRPGMYIGSTGIKGLHHCIWEILDNAIDEISNGYGDTAEVI 67

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L+ +  +TVVDNGRGIP   HP    KS +E++ T LH GGKF+NS Y+ SGGLHGVG S
Sbjct: 68  LNKDKSVTVVDNGRGIPTGIHP-IKKKSGVEMVFTELHTGGKFNNSIYKTSGGLHGVGAS 126

Query: 161 VVNALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTRITF 209
           VVNALS+   V V + + I+ Q+F             G P++ L+         GTR+TF
Sbjct: 127 VVNALSEWTEVEVYQNDKIYKQRFEYALDKKLNKKMPGTPVTKLKIVGDTGE-TGTRVTF 185

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +PD ++F     F    + +  Q  A+ +  +      +++       PE +E++   GL
Sbjct: 186 KPDKEVFST-IDFKFDVIDERLQELAFQNKGITLKLIDNRK-----EEPEIKEYHSERGL 239

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
             ++    E+++ I +     + EK+    +   E    + + +   I SY N I T E 
Sbjct: 240 LDFIDYLNESKTPIHNPAVLFEGEKEINNLKMEGEICFQFTDSSTENIASYVNNIPTTEA 299

Query: 328 GTHESGLRVALTRGIKK--YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTHE+G +  +TR  K+         ++      DDL      I+ + I  P F GQTKT
Sbjct: 300 GTHETGFKTGMTRAFKEGAKKLSLIKEKDKEFDGDDLREGITAIVRIKISNPVFEGQTKT 359

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444
           KL + +A   + +     F  ++  N   +T ++   +  +  R + +K  E   +K   
Sbjct: 360 KLGNNEAYTMMNDLAYTKFLEWIEDNKEVSTLIINNALAAAARREKIKKINEAEKKKIGK 419

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               L GK+A C+   ++ TE  +VEGDSAGGSAKQAR+R  Q+++P +GKI+N      
Sbjct: 420 GLAPLAGKIAVCTLRDSNVTEFIVVEGDSAGGSAKQARDRRFQSIMPSKGKIMNTEKQKI 479

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           E +  ++++     A+G      Y+EEDL+Y+K+II++DADVDG HI +L +T+ Y+ M 
Sbjct: 480 ENVLGSEELKIFNTAIGTGVLDNYKEEDLKYDKIIILSDADVDGYHIRTLWMTYIYRYMK 539

Query: 565 DLIEQKHLFLISPPLFRI----TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
            L+   HL++  PPL++I     +G KSVY +++E  +K  ++  +       I R+KGL
Sbjct: 540 SLVANGHLYIAMPPLYKIYKKDKKGEKSVYCYNDEELEKAKKQIGR----GYLIQRYKGL 595

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GEM   QL ET ++   RTL R+ I          +  ++ LMG   + R  ++ + A F
Sbjct: 596 GEMNPEQLWETTLNPETRTLQRITIED----AAKAEKMVSLLMGDVVEPRKNYLYKYAEF 651


>gi|84624476|ref|YP_451848.1| DNA topoisomerase IV subunit B [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188575893|ref|YP_001912822.1| DNA topoisomerase IV subunit B [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|84368416|dbj|BAE69574.1| topoisomerase IV subunit B [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188520345|gb|ACD58290.1| DNA topoisomerase IV, B subunit [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 629

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 241/642 (37%), Positives = 361/642 (56%), Gaps = 25/642 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y+A+ I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AG+A  IEV+L  
Sbjct: 5   YNAADIEVLSGLDPVKRRPGMY---TDTARPNHLAQEVIDNSVDEALAGHAKQIEVTLYK 61

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G   V D+GRG+PV+ HP+      +E+ILT LHAGGKF+N  Y  SGGLHGVG+SVVN
Sbjct: 62  DGSCEVSDDGRGMPVDIHPE-EKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVSVVN 120

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222
           ALS ++ + + R+ +    +F  G   S LE    V +   GTR+ F  DPK F     F
Sbjct: 121 ALSTKVELFIKREGSEHRMEFRDGNAASKLEVVGTVGKKNTGTRLRFWADPKYFDTP-KF 179

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L  + ++KA L   +      +          E++ +YF  GL+ YL+ ++    +
Sbjct: 180 NVRALRHLLRAKAVLCPGLTVKLHDE-------ATGEQDSWYFENGLRDYLKGEMAEHEM 232

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRG 341
           + +++F G  +K       V+WA  W  E      SY N I T + GTH +GLR  LT  
Sbjct: 233 LPADLFVGSLKKDTEI---VDWAAGWVPEGELVQESYVNLIPTAQHGTHVNGLRSGLTDA 289

Query: 342 IKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
           ++++ +      R + +  +D+      +LS+ + +P+F+GQTK +L S  A   +E A 
Sbjct: 290 LREFCDFRNLLPRGVKLAPEDVWDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAA 349

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
            D F  YL QN     K+ +  I+R+  RL+   ++++ RK   +   LPGKLADC    
Sbjct: 350 HDAFSLYLNQNVEIGEKIAQIAIDRASARLK--TEKQIVRKKVTQGPALPGKLADCISQD 407

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              TELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN     S  +  ++++ +L  A+
Sbjct: 408 LSRTELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASEEVHNLAIAI 467

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           GC          LRY KV+I+ DAD DG HIA+LL   F Q    L+   H+F+  PPLF
Sbjct: 468 GCDPGKDDI-TGLRYGKVVILADADSDGLHIATLLTALFLQHFPALVAAGHVFVAMPPLF 526

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           R+  G +  YA DEE K  +L++  +   KG+I ++RFKGLGEM   QL+E+ +  + R 
Sbjct: 527 RVDVGKQVFYALDEEEKTTLLDKIAREKMKGQISVTRFKGLGEMNPQQLRESTIHPDTRR 586

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           L+++ I+    +          L   +A +R ++++ +    
Sbjct: 587 LVQLTIDDGEQTRLLMDML---LAKKRASDRKQWLETKGDLA 625


>gi|325123890|gb|ADY83413.1| topoisomerase IV subunit B [Acinetobacter calcoaceticus PHEA-2]
          Length = 627

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 255/645 (39%), Positives = 373/645 (57%), Gaps = 28/645 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y A S+ +L GL+PVR RPGMY   TD    +HL  EVIDNA+DE +AG+A+ I V++ 
Sbjct: 3   QYTAQSLEVLSGLDPVRRRPGMY---TDTTRPNHLAQEVIDNAVDEALAGHADKICVTVY 59

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G L+V DNGRG+PV+ HP++  +S +EIILT LHAGGKF    Y+ SGGLHGVGISVV
Sbjct: 60  KDGSLSVEDNGRGMPVDIHPEY-GQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISVV 118

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGDKA 220
           NALS  + V V RQ  ++   F +G P++PL   E    +   GT + F P+ K F    
Sbjct: 119 NALSTRVEVEVQRQGNLYQMAFEQGEPVAPLAVLEGKAPKRATGTTVHFWPEAKYFDSP- 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L    ++KA L+  +K  +             EK E+ F  GL  YL  +L++R
Sbjct: 178 KFALKALKHNLKAKAVLAAGLKIIYIDQ-------INDEKIEWQFENGLVDYLMDELQDR 230

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVAL 338
            ++ +  F    +     R   E+AI W  E  E    SY N I T +GGTH +GLR  +
Sbjct: 231 EILPNPAFVSSGQAD---RAACEFAICWNVEGGEQVQESYVNLIPTAQGGTHVNGLRSGV 287

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           T  ++++ EL     R + + ++D+      ILS+  +EP+F+GQTK +L S +A   V 
Sbjct: 288 TEALREFCELRNLLPRNLKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREASNIVL 347

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
           N  +D F  +L Q+   A +L E  I ++  RL+    ++V RK  +    LPGKLADC 
Sbjct: 348 NIAKDAFALWLNQHAEIAMQLAEMAISKAGRRLK--AAKKVERKKIVSGPALPGKLADCV 405

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +ELFIVEGDSAGGSAKQAR+++ QA++P+RGKILN     S+++  +Q++ D+ 
Sbjct: 406 GQTREDSELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIA 465

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S     +LRY K+ I+ DAD DG HIA+LL   F +    L+E+ HL++  P
Sbjct: 466 IAIGVDPGSDDL-SELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAMP 524

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PLFRI  G    YA D++  + IL+  K  G    +I+RFKGLGEM A QL+ET MD N 
Sbjct: 525 PLFRIDIGKDVHYALDDDELETILKNIK--GNRNPQITRFKGLGEMNAIQLRETTMDPNT 582

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           R L++++++    +          L   ++ +R ++++++ +  D
Sbjct: 583 RRLVQLDLDDVHLTAGLLDKL---LAKKRSADRKQWLEQKGNLAD 624


>gi|330873813|gb|EGH07962.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 634

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 243/655 (37%), Positives = 366/655 (55%), Gaps = 27/655 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            AN SAS +Y+A +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A
Sbjct: 1   MANPSAS-SYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHA 56

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             ++V L  +  L V D+GRG+PV+ HP+    S +E+ILT LHAGGKF N  Y+ SGGL
Sbjct: 57  RSVQVILHADNSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213
           HGVGISVVNALS ++ V V R    +   F+ G   + L     V +   GT + F PDP
Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVIGTVGKRNTGTSVYFAPDP 175

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     F  +RL  + ++KA L   +   +             EK E+++  GL++YL
Sbjct: 176 KYFDTP-KFSVSRLKHVLKAKAVLCPGLLVSFEDK-------SSGEKIEWHYEDGLRSYL 227

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHE 331
           Q  +     + +E F G        +  V+WA+ W  E  +    SY N I T +GGTH 
Sbjct: 228 QDSVTEFLRLPNEPFCGSFAGN---KEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHV 284

Query: 332 SGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           +GLR  L   ++++ E      R + +  +D+      +LS+ ++EP+F+GQTK +L S 
Sbjct: 285 NGLRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSR 344

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
           +A   V   ++D F  +L  +     +L +  I  +  RL+    ++V RK   +   LP
Sbjct: 345 EAAAFVSGVVKDAFSLWLNTHSELGLQLADLAINNAGRRLK--ASKKVERKRITQGPALP 402

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC+      +ELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN       ++  +
Sbjct: 403 GKLADCAGQDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLAS 462

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           Q++ ++  A+G    +      LRY K+ I+ DAD DG HIA+LL   F Q    L++  
Sbjct: 463 QEVHNIAVAIGVDPGAADI-SQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAG 521

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLK 629
           H+++  PPL+RI  G +  YA DE  +  IL+    +  +GK +++RFKGLGEM   QL+
Sbjct: 522 HVYVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLR 581

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           ET MD N R L+++ ++    + +        L   +A +R  +++ + +  + +
Sbjct: 582 ETTMDPNTRRLVQLTLDDYAATSEMMDML---LAKKRAGDRKSWLESKGNLAEVL 633


>gi|302537373|ref|ZP_07289715.1| DNA gyrase subunit B [Streptomyces sp. C]
 gi|302446268|gb|EFL18084.1| DNA gyrase subunit B [Streptomyces sp. C]
          Length = 706

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 236/706 (33%), Positives = 344/706 (48%), Gaps = 53/706 (7%)

Query: 23  LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82
              +     +          NY A  + +LEGLE VR RPGMYIG TD + L H   E+I
Sbjct: 2   TADTSVPSSALLSGADRDGSNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEII 61

Query: 83  DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142
           DN++DE + G+ + IEV L  +  + V DNGRGIPV+  PK    S +E+++T LHAGGK
Sbjct: 62  DNSVDEALGGFCDHIEVILHDDASVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHAGGK 120

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV--- 199
           F   +Y  SGGLHGVG SVVNALS  L V V R ++  +  F RG+P    E+  +    
Sbjct: 121 FGGGSYAASGGLHGVGASVVNALSARLDVEVDRNSSTHAISFRRGVPGVFTEQGPESPFD 180

Query: 200 ------------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247
                       + K GTRI +  D +IF   A      L +  +  A+L   +      
Sbjct: 181 PANGLRKAKRIAKGKTGTRIRYWADRQIFLKDARLSLETLYQRARQTAFLVPGLTIVVRD 240

Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-------------- 293
           ++ I         E F F GG+  + +   +++++      TG                 
Sbjct: 241 ERGIDGAGKTE--ETFRFDGGISEFCEYLAQDKAVCDVLRLTGTGTFKETVPVLDDRGHM 298

Query: 294 --KKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
              + T    V+ A+ W       + S+ N I T +GGTH SG   ++T+ + +     +
Sbjct: 299 TPTEVTRELGVDIALRWGTGYETGVKSFVNIIATPKGGTHVSGFERSVTKTVNEVLRSAK 358

Query: 351 NKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
             R        DD M     +++V + EP+F GQTK  L +  A R V   +      +L
Sbjct: 359 LLRVAEDDVVKDDAMEGMTAVVTVRLAEPQFEGQTKEVLGTSAATRIVAAVVAKELKAFL 418

Query: 409 VQNPIEATKLLEWVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHG 463
                +  +    V+E+           R+ +    RKTA+    LP KLADC  +    
Sbjct: 419 TSTKRDDKQQARAVMEKIVAAARTRIAARQHKEAQRRKTALETSSLPAKLADCRSDDVDR 478

Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523
           +ELFIVEGDSA G+AK ARN   QA+LP+RGKILNV  +    +  N +   ++Q +G  
Sbjct: 479 SELFIVEGDSALGTAKLARNSEFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVIGAG 538

Query: 524 TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI- 582
           +   +  +  RY K++++ DADVDGAHI  LLLT F + M  ++E   +F   PPL RI 
Sbjct: 539 SGRTFDIDAARYGKIVLLVDADVDGAHIRCLLLTLFQRYMRPMVEAGRVFAAVPPLHRIE 598

Query: 583 ----TQGT-KSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
                +G  K VY + +   ++ L E+ +K+ + K  I R+KGLGEM A QL ET MD  
Sbjct: 599 LVQPKKGQDKYVYTYSDNELRQTLLEYQRKNIRYKDAIQRYKGLGEMDADQLAETTMDPR 658

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            RTL R+ I      L   +   + LMG +   R +FI   A+ +D
Sbjct: 659 HRTLRRINIGD----LDSAEQVFDLLMGNEVAPRKEFITGSAATLD 700


>gi|15894905|ref|NP_348254.1| DNA topoisomerase IV subunit B [Clostridium acetobutylicum ATCC
           824]
 gi|15024585|gb|AAK79594.1|AE007672_1 DNA gyrase B subunit [Clostridium acetobutylicum ATCC 824]
 gi|325509042|gb|ADZ20678.1| DNA topoisomerase IV subunit B [Clostridium acetobutylicum EA 2018]
          Length = 650

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 223/666 (33%), Positives = 353/666 (53%), Gaps = 36/666 (5%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
                  ++YD +S+  LE LEPVR+RPGMYIG T  K LHH   E++DNA+DE+  G+ 
Sbjct: 1   MNKNENIEDYDVTSLTSLEKLEPVRIRPGMYIGSTGSKGLHHCIWEILDNAIDELTNGFG 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           ++ ++ L+ +  +T++DNGRGIP   HP    KS +E++ T LH GGKF+N  Y+ SGGL
Sbjct: 61  DMAKIILNKDKSVTIIDNGRGIPTGIHP-IKKKSGVEMVYTELHTGGKFNNKNYKTSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKR 203
           HGVG +VVNALS    V V +   I+ Q+F             G P++ +EK  K  +K+
Sbjct: 120 HGVGAAVVNALSKWTEVEVYQNGYIYRQRFEYAYDKELKRDMPGTPVTEIEKIGKT-DKK 178

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT++TF+PD ++F     F    + +  +  A+ +  +       +E       P+ + +
Sbjct: 179 GTKVTFKPDEEVFTS-TDFKFDVIDERLKEIAFQNKGITLILEDHRE-----DEPQVKTY 232

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPEIT-SYCNT 321
           +   GL  ++    E++++I         E++    +   E  + + +   E   SY N 
Sbjct: 233 HSERGLLDFIDYLNESKTVIHKNPIIFDGEREINGLKLYGEVCLQFTDSTTEYIASYVNN 292

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I T E GTHE+G +  +TR  K++A+      ++      +D+      I+ + +  P F
Sbjct: 293 IPTTEAGTHEAGFKTGMTRAFKEWAKKLGVLKEKDKEFEGNDVREGMTAIIRIKLTNPVF 352

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-V 438
            GQTKTKL + +A   + +     F  ++  N   AT +++  +  +  R + +K  E  
Sbjct: 353 EGQTKTKLGNNEAYTMMNDLAYSGFSEWIEDNKDTATMIIKNAVNAASRREKIKKINEAE 412

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            +K       L GK+A C+   A   E  IVEGDSAGGSAKQAR+R  Q+++P +GKI+N
Sbjct: 413 KKKIGKGTSPLAGKIAVCTLKDASLCEFIIVEGDSAGGSAKQARDRRFQSIMPSKGKIMN 472

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
                 E +  ++++     A+G      YREEDLRY+K+IIM+DADVDG HI +L +T+
Sbjct: 473 TEKQKLENVLGSEELKIFNTAVGTGILDNYREEDLRYDKIIIMSDADVDGYHIRTLWMTY 532

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEI 614
            Y+ M  LI  +HL++  PPL+++ + +K      YA+ +E   K  +E  K       I
Sbjct: 533 IYRYMRQLISNEHLYIALPPLYKVYKNSKKGEVVEYAYSDEQLDKAKKEVGK----GYLI 588

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
            R+KGLGEM   QL ET ++   RTL  V I          +  ++ LMG   + R  ++
Sbjct: 589 QRYKGLGEMNPDQLWETTLNPETRTLQMVTIED----AAKAEKMVSLLMGDVVEPRKNYM 644

Query: 675 QERASF 680
            + A F
Sbjct: 645 YKYAEF 650


>gi|293610546|ref|ZP_06692846.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826890|gb|EFF85255.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 627

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 255/645 (39%), Positives = 373/645 (57%), Gaps = 28/645 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y A S+ +L GL+PVR RPGMY   TD    +HL  EVIDNA+DE +AG+A+ I V++ 
Sbjct: 3   QYTAQSLEVLSGLDPVRRRPGMY---TDTTRPNHLAQEVIDNAVDEALAGHADKICVTVY 59

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G L+V DNGRG+PV+ HP++  +S +EIILT LHAGGKF    Y+ SGGLHGVGISVV
Sbjct: 60  KDGSLSVEDNGRGMPVDIHPEY-GQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISVV 118

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGDKA 220
           NALS  + V V RQ  ++   F +G P++PL   E    +   GT + F P+ K F    
Sbjct: 119 NALSTRVEVEVQRQGNLYQMAFEQGEPVAPLAVLEGKAPKRATGTTVHFWPEAKYFDSP- 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L    ++KA L+  +K  +             EK E+ F  GL  YL  +L++R
Sbjct: 178 KFALKALKHNLKAKAVLAAGLKITYIDQ-------INDEKIEWQFENGLVDYLMDELQDR 230

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVAL 338
            ++ +  F    +     R   E+AI W  E  E    SY N I T +GGTH +GLR  +
Sbjct: 231 EILPNPAFVSSGQAD---RAACEFAICWNVEGGEQVQESYVNLIPTAQGGTHVNGLRSGV 287

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           T  ++++ EL     R + + ++D+      ILS+  +EP+F+GQTK +L S +A   V 
Sbjct: 288 TEALREFCELRNLLPRNLKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREASNIVL 347

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
           N  +D F  +L Q+   A +L E  I ++  RL+    ++V RK  +    LPGKLADC 
Sbjct: 348 NIAKDAFALWLNQHAEIAMQLAEMAISKAGRRLK--AAKKVERKKIVSGPALPGKLADCV 405

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +ELFIVEGDSAGGSAKQAR+++ QA++P+RGKILN     S+++  +Q++ D+ 
Sbjct: 406 GQTREDSELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIA 465

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S     +LRY K+ I+ DAD DG HIA+LL   F +    L+E+ HL++  P
Sbjct: 466 IAIGVDPGSDDL-SELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAMP 524

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PLFRI  G    YA D++  + IL+  K  G    +I+RFKGLGEM A QL+ET MD N 
Sbjct: 525 PLFRIDIGKDVHYALDDDELETILKNIK--GNRNPQITRFKGLGEMNAIQLRETTMDPNT 582

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           R L++++++    +          L   ++ +R ++++++ +  D
Sbjct: 583 RRLVQLDLDDVHLTAGLLDKL---LAKKRSADRKQWLEQKGNLAD 624


>gi|304389375|ref|ZP_07371339.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|304327364|gb|EFL94598.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 703

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 232/697 (33%), Positives = 343/697 (49%), Gaps = 63/697 (9%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y A  + +LEGLE VR RP MYIG TD++ L H   E+IDN++DE +AG+ + IEV L
Sbjct: 8   SDYSAHHLSVLEGLEAVRKRPAMYIGSTDKRGLMHCLWEIIDNSVDEALAGFCDHIEVVL 67

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +    V DNGRG+P++  P     S +E++ T LHAGGKFD   Y+++GGLHGVG SV
Sbjct: 68  YPDHSAEVRDNGRGVPIDEVP-GTGLSGVEVVYTKLHAGGKFDAGLYKVAGGLHGVGASV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIP--------------------LSPLEKKEKVRN 201
           VNALS  + V V R       +F RG P                     S L K  KV+ 
Sbjct: 127 VNALSARMDVAVDRDGYTHGLQFRRGEPGVFSDTEELNPNNAFLPFEDSSKLTKLGKVKK 186

Query: 202 -KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
              GTR+ F  D +IF  +  F    L    +  ++L   +    +  +           
Sbjct: 187 GTTGTRVRFWADYQIFPKEVDFSYEDLSNRARKTSFLVPGLAITITDLR-----GEETLT 241

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-----------------KKGTHRGTVE 303
           + F   GG   ++     +R++  +    G                    K+      V+
Sbjct: 242 DTFLHKGGTVDFVDYLAPDRAITDTWQLQGSGTFMEIVQVPNQQTGHLEPKEMERTCEVD 301

Query: 304 WAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK-----RAISI 357
            A+ W      +  SY N I T  GGTH +G    L + ++   +    +     +   I
Sbjct: 302 VALRWGVGYDTVEQSYVNIIETPVGGTHLAGFEAGLVKTLRAAIQANSRRLKLGAKESKI 361

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY----LVQNPI 413
             +D++     +++V + EPEF GQTK  L S   +  V   + +  +        ++  
Sbjct: 362 EKEDILAGMTAVITVRLPEPEFEGQTKEALGSAKVKPIVTKVVTEELEAKLNSRKREDKN 421

Query: 414 EATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
           + + LL+ ++     RL  R  +E   RK A+    LP KL DC  +    +ELFIVEGD
Sbjct: 422 QVSALLDKIVAEMRSRLSARLSKEITRRKNALETSTLPTKLVDCRSDDVEKSELFIVEGD 481

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           SA G+AK ARN   QA+ P+RGKILNV   G+ ++  N +   ++Q LG  +   +    
Sbjct: 482 SALGTAKAARNSEFQALFPIRGKILNVQKTGTAQMLANAECAAIIQVLGAGSGRTFDISQ 541

Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT---QGT--- 586
            RY KVI+MTDADVDGAHI +LLLT F++ M  +I    +F   PPL RI    +G    
Sbjct: 542 ARYGKVIMMTDADVDGAHIRTLLLTLFFRYMRPMIAAGRVFAAVPPLHRIQVNAKGKTPG 601

Query: 587 KSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645
           + +Y + E+   K L + ++ G+  K  I R+KGLGEM A QL ET MD   RTL R+ +
Sbjct: 602 EFLYTYSEDQLHKELGKLEQTGRTYKEPIQRYKGLGEMDADQLAETTMDPQHRTLRRIRL 661

Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           + +  ++   ++    LMG+    R +FI E AS +D
Sbjct: 662 SDE-AAVNRAEEVFELLMGSAVPPRREFIIEGASKLD 697


>gi|257054877|ref|YP_003132709.1| DNA topoisomerase IV subunit B [Saccharomonospora viridis DSM
           43017]
 gi|256584749|gb|ACU95882.1| DNA topoisomerase IV subunit B [Saccharomonospora viridis DSM
           43017]
          Length = 701

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 230/689 (33%), Positives = 338/689 (49%), Gaps = 52/689 (7%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
             SA + Y A  +  LEGLE VR RPGMYIG TD + ++HLF+E++DN+ DE +AG+A  
Sbjct: 18  TASAENLYGADDLTHLEGLEAVRKRPGMYIGSTDSRGVNHLFTEIVDNSTDEGVAGHATK 77

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V+L  +G + V D+GRGIP   H K    S +E++LT LHAGGKF  S Y+ SGGLHG
Sbjct: 78  IVVTLHADGSVEVDDDGRGIPTGTHGK-SGLSGVELVLTRLHAGGKFGGSGYKASGGLHG 136

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP----------------LEKKEKVR 200
           VG S VNALS  L VTV R   +    F RG+P                     +K K  
Sbjct: 137 VGASAVNALSLRLDVTVKRDGKVHEMSFRRGVPGIFDGPGPRAKFTPKSGLRFVRKMKRG 196

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
              GT I +  D + F   A  D  ++    ++ A+L   V                  +
Sbjct: 197 ESTGTTIRYWHDARYFEKGAALDPEQVRMKLRNTAFLVPGVTYVLRTA-----TDSTINE 251

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE---------------KKGTHRGTVEWA 305
           E F++P GL   ++           +      E                    R  VE A
Sbjct: 252 ETFHYPNGLVDMVEFLAPAGDRPVCDTQLITGEGTYRENAADANGVMQSNVERRAEVEIA 311

Query: 306 IAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ---NKRAISIISDD 361
           + W          + NTI    GGTH  G    L R +      T+     +    I DD
Sbjct: 312 LRWGTGYERTVECFTNTIRNIHGGTHRKGFERGLVRAVHDAISKTRGLLKPKEEPPILDD 371

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY--LVQNPIEATKLL 419
           +      ++ V I EP+F  QTK +L +    + V+  +      +    +   E   +L
Sbjct: 372 VCEGLTAVVHVRIPEPQFTSQTKDELSTAGITKVVQGLVEKHIKAWAEHRRTRAEVKTVL 431

Query: 420 EWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
           + +++ S  RL +++Q++   RKTA+    +P KL DC       +ELF+VEGDSA GSA
Sbjct: 432 QKIVDASRVRLAQKQQKDAARRKTALEGAAMPPKLVDCRSTGVSRSELFLVEGDSALGSA 491

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538
           + AR    QA+LPLRGKILNV  A   +   N +I  +VQ LG  T   +    +RY +V
Sbjct: 492 RLARVSEYQALLPLRGKILNVQKANLSEALKNAEIASIVQVLGAGTGRTFDISSMRYGRV 551

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-TQGTK--SVYAHDEE 595
           I+M DADVDG+HI +LL+T F + M  +I +  L+   PPL +I T+G K  + Y + E 
Sbjct: 552 ILMADADVDGSHIRTLLITLFARYMRPVITEGRLYAAMPPLHKIVTKGRKPETHYTYTER 611

Query: 596 HKQKILEEFKKHGKGKIE-ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
             +  + E ++ GK  ++ + RFKGLGEM A +L ET M+   R++ R+ ++     +  
Sbjct: 612 EMEAKVAELERSGKQVVKPVPRFKGLGEMDADELWETTMNPATRSVRRITLDD----VDA 667

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDD 683
            + ++  LMG K + R K++   A  ++ 
Sbjct: 668 AEATLELLMGEKVEPRRKWLITSAERVNQ 696


>gi|148549993|ref|YP_001270095.1| DNA topoisomerase IV subunit B [Pseudomonas putida F1]
 gi|148514051|gb|ABQ80911.1| DNA topoisomerase IV subunit B [Pseudomonas putida F1]
          Length = 634

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 246/653 (37%), Positives = 364/653 (55%), Gaps = 27/653 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            AN SAS  Y+A +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A
Sbjct: 1   MANPSASA-YNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHA 56

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             ++V L  +  L V D+GRG+PV+ HP+    S +E+ILT LHAGGKF N  Y+ SGGL
Sbjct: 57  RSVQVILHADHSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213
           HGVGISVVNALS ++ V V R    +   F+ G   S LE    V +   GT + F PDP
Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYQMTFADGFKASELEVVGSVGKRNTGTSVYFSPDP 175

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     F  +RL  + ++KA L   +   +             EK E+++  GL++YL
Sbjct: 176 KYFDSP-KFSISRLKHVLKAKAVLCPGLLVSFEDK-------ASGEKVEWHYEDGLRSYL 227

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHE 331
              +     +  E F G        +  V+WA+ W  E  +    SY N I T +GGTH 
Sbjct: 228 VDSVNEFQRLPDEPFCGSLAGN---KEAVDWALLWLPEGGDSIQESYVNLIPTAQGGTHV 284

Query: 332 SGLRVALTRGIKKYAEL-TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           +GLR  L   ++++ E  +   R + +  +D+      +LS+ +++P+F+GQTK +L S 
Sbjct: 285 NGLRQGLLDAMREFCEFRSLLPRGVKLAPEDVWERITFVLSMKMQDPQFSGQTKERLSSR 344

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
           +A   V   ++D F  +L  +P    +L E  I  +  RL+    ++V RK   +   LP
Sbjct: 345 EAAAFVSGVVKDAFSLWLNAHPELGMQLAELAISNAGRRLK--ASKKVERKRITQGPALP 402

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC+       ELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN       ++  +
Sbjct: 403 GKLADCAGQDPMRAELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLAS 462

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           Q++ ++  A+G    +      LRY K+ I+ DAD DG HIA+LL   F Q    L+E  
Sbjct: 463 QEVHNIAVAIGVDPGATDL-AQLRYGKICILADADSDGLHIATLLCALFVQHFRALVEAG 521

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLK 629
           H+++  PPL+RI  G +  YA DE  +  IL+    +  +GK +++RFKGLGEM   QL+
Sbjct: 522 HVYVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLR 581

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           ET MD N R L+++ ++    + +        L   +A +R  +++ + +  +
Sbjct: 582 ETTMDPNTRRLVQLTLDDVEATCELMDKL---LAKKRAGDRKSWLETKGNLAE 631


>gi|50086499|ref|YP_048009.1| DNA topoisomerase IV subunit B [Acinetobacter sp. ADP1]
 gi|49532475|emb|CAG70187.1| topoisomerase IV subunit B [Acinetobacter sp. ADP1]
          Length = 626

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 256/646 (39%), Positives = 371/646 (57%), Gaps = 29/646 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y A S+ +L GL+PVR RPGMY   TD    +HL  EVIDNA+DE +AG+AN I V++
Sbjct: 2   SQYTAQSLEVLSGLDPVRRRPGMY---TDTTRPNHLAQEVIDNAVDEALAGHANKIRVTV 58

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G L V DNGRG+PV+ HP++  +S +EIILT LHAGGKF    Y+ SGGLHGVGISV
Sbjct: 59  YQDGSLAVEDNGRGMPVDIHPEY-GQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISV 117

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK--KEKVRNKRGTRITFRPDPKIFGDK 219
           VNALS  + V V RQ  ++   F  G P++PLE    +  +   GT + F P+ K F   
Sbjct: 118 VNALSSRVEVEVQRQGNLYKMAFEHGEPVAPLEVLAGKAPKRASGTTVHFWPEAKYFDSP 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L    ++KA L+  ++  +  +          E  E+ F  GL  YL  +LE+
Sbjct: 178 -KFALKALKHNLKAKAVLAAGLQIIYVDE-------INNETIEWQFENGLVDYLMDELED 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVA 337
           R ++ +  F    +     R + E+AI W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 RDILPNPAFLSSGQ---VERASCEFAICWNVEGGEQIQESYVNLIPTAQGGTHVNGLRSG 286

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           +T  ++++ EL     R + + ++D+      ILS+  +EP+F+GQTK +L S +A   V
Sbjct: 287 VTEALREFCELRNLLPRNLKLSAEDVWDGVNFILSLKFQEPQFSGQTKERLSSREASGVV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
            N  +D F  +L QN   A +L E  I ++  RL+    ++V RK  +    LPGKLADC
Sbjct: 347 LNIAKDAFALWLNQNSEIAMQLAEMAISKAGRRLK--AAKKVERKKIVSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
                  +ELFIVEGDSAGGSAKQAR+++ QA++P+RGKILN     S+++  +Q++ D+
Sbjct: 405 VGQTREESELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S     +LRY K+ I+ DAD DG HIA+LL   F +    L+E+ HL++  
Sbjct: 465 AIAIGVDPGSDDL-SELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAM 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLFRI  G    YA D+E    IL + K       +I+RFKGLGEM ASQL+ET MD +
Sbjct: 524 PPLFRIDAGKDVFYALDDEELDAILSKLK---TKNPQITRFKGLGEMNASQLRETTMDPD 580

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            R L++++++    +          L   ++ +R  +++++ +  D
Sbjct: 581 TRRLVQLDLDDAHMTAGLLDKL---LAKKRSADRKHWLEQKGNLAD 623


>gi|168183163|ref|ZP_02617827.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium botulinum
           Bf]
 gi|237796208|ref|YP_002863760.1| DNA topoisomerase IV subunit B [Clostridium botulinum Ba4 str. 657]
 gi|182673723|gb|EDT85684.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium botulinum
           Bf]
 gi|229263801|gb|ACQ54834.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium botulinum
           Ba4 str. 657]
          Length = 651

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 227/660 (34%), Positives = 354/660 (53%), Gaps = 36/660 (5%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +YD + +  LE LEPVR+RPGMYIG T  K LHH   E++DNA+DE+  GY N  EV 
Sbjct: 8   TKDYDVTKLTSLEKLEPVRVRPGMYIGSTGIKGLHHCIWEILDNAIDEISNGYGNTAEVI 67

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L+ +  +TVVDNGRGIP   HP    KS +E++ T LH GGKF+NS Y+ SGGLHGVG S
Sbjct: 68  LNKDKSVTVVDNGRGIPTGIHP-IKKKSGVEMVFTELHTGGKFNNSIYKTSGGLHGVGAS 126

Query: 161 VVNALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTRITF 209
           VVNALS+   V V + + I+ Q+F             G P++ L+      +K GTR+TF
Sbjct: 127 VVNALSEWTEVEVYQNDKIYKQRFEYALDKKLNKKMPGTPVTKLKIVGDT-DKTGTRVTF 185

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +PD ++F     F    + +  Q  A+ +  +      +++       PE +E++   GL
Sbjct: 186 KPDKEVFST-IDFKFDVIDERLQELAFQNKGITLKLIDNRK-----EEPEIKEYHSERGL 239

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
             ++    E+++ I +     + EK+    +   E    + + +   I SY N I T E 
Sbjct: 240 LDFIDYLNESKTPIHNPAVLFEGEKEINNLKMEGEICFQFTDSSTENIASYVNNIPTTEA 299

Query: 328 GTHESGLRVALTRGIKK--YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTHE+G +  +TR  K+         ++      DDL      I+ + I  P F GQTKT
Sbjct: 300 GTHETGFKTGMTRAFKEGAKKLSLIKEKDKEFDGDDLREGITAIVRIKISNPVFEGQTKT 359

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444
           KL + +A   + +     F  ++  N   +T ++   +  +  R + +K  E   +K   
Sbjct: 360 KLGNNEAYTMMNDLAYSKFLEWIEDNKEVSTLIINNALAAAARREKIKKINEAEKKKIGK 419

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               L GK+A C+   ++ TE  +VEGDSAGGSAKQAR+R  Q+++P +GKI+N      
Sbjct: 420 GLAPLAGKIAVCTLRDSNVTEFIVVEGDSAGGSAKQARDRRFQSIMPSKGKIMNTEKQKI 479

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           E +  ++++     A+G      Y+EEDL+Y+K+II++DADVDG HI +L +T+ Y+ M 
Sbjct: 480 ENVLGSEELKIFNTAIGTGVLDNYKEEDLKYDKIIILSDADVDGYHIRTLWMTYIYRYMK 539

Query: 565 DLIEQKHLFLISPPLFRI----TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
            L+   HL++  PPL+++     +G K VY +++E  +K  ++  +       I R+KGL
Sbjct: 540 SLVANGHLYIAMPPLYKVYKKDKKGEKLVYCYNDEELEKAKKQIGR----GYLIQRYKGL 595

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GEM   QL ET ++   RTL R+ I          +  ++ LMG   + R  ++ + A F
Sbjct: 596 GEMNPEQLWETTLNPETRTLQRITIED----AAKAEKMVSLLMGDVVEPRKNYLYKYAEF 651


>gi|329297784|ref|ZP_08255120.1| DNA gyrase subunit B [Plautia stali symbiont]
          Length = 802

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 222/566 (39%), Positives = 344/566 (60%), Gaps = 18/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ + I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSNIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R      Q +  G+P +PL       +  GTR+ F P    F + 
Sbjct: 121 SVVNALSQKLELIIRRDGKEHQQTYVHGVPQAPLAVTGDT-DATGTRVRFWPSHDTFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++        + + +++ GG+K +++    N
Sbjct: 180 TDFEYEILAKRLRELSFLNSGVSIRLEDKRD-------DKNDHYHYEGGIKAFVEYLNRN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           +  I   +F   TEK G     VE A+ W +   +    + N I   +GGTH +G R A+
Sbjct: 233 KKPIHPNVFYFCTEKDGI---GVEVALQWNDGFQKNIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     V ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLVAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +E+++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE+ ++++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  D++   + 
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDDAMDQY 555



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ ++   K  +  + + R+KGLGEM   QL ET MD + R +LRV I   +       
Sbjct: 717 FEQAIDWLVKESRRGLSVQRYKGLGEMNPDQLWETTMDPDSRRMLRVTIKDAI----AAD 772

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 773 QLFTTLMGDAVEPRRAFIEENALKAANID 801


>gi|298346918|ref|YP_003719605.1| DNA topoisomerase [Mobiluncus curtisii ATCC 43063]
 gi|315656629|ref|ZP_07909516.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|298236979|gb|ADI68111.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus curtisii ATCC
           43063]
 gi|315492584|gb|EFU82188.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 703

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 232/697 (33%), Positives = 343/697 (49%), Gaps = 63/697 (9%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y A  + +LEGLE VR RP MYIG TD++ L H   E+IDN++DE +AG+ + IEV L
Sbjct: 8   SDYSAHHLSVLEGLEAVRKRPAMYIGSTDKRGLMHCLWEIIDNSVDEALAGFCDHIEVVL 67

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +    V DNGRG+P++  P     S +E++ T LHAGGKFD   Y+++GGLHGVG SV
Sbjct: 68  YPDHSAEVRDNGRGVPIDEVP-GTGLSGVEVVYTKLHAGGKFDAGLYKVAGGLHGVGASV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIP--------------------LSPLEKKEKVRN 201
           VNALS  + V V R       +F RG P                     S L K  KV+ 
Sbjct: 127 VNALSARMDVAVDRDGYTHGLQFRRGEPGVFSDTEELNPNNAFLPFEDSSKLTKLGKVKK 186

Query: 202 -KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
              GTR+ F  D +IF  +  F    L    +  ++L   +    +  +           
Sbjct: 187 GTTGTRVRFWADYQIFPKEVDFSYEDLSNRARKTSFLVPGLAITITDLR-----GEETLT 241

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-----------------KKGTHRGTVE 303
           + F   GG   ++     +R++  +    G                    K+      V+
Sbjct: 242 DTFLHKGGTVDFVDYLAPDRAITDTWQLQGSGTFMEIVQVPNQQTGHLEPKEMERTCEVD 301

Query: 304 WAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK-----RAISI 357
            A+ W      +  SY N I T  GGTH +G    L + ++   +    +     +   I
Sbjct: 302 VALRWGVGYDTVEQSYVNIIETPVGGTHLAGFEAGLVKTLRAAIQANSRRLKLGAKESKI 361

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY----LVQNPI 413
             +D++     +++V + EPEF GQTK  L S   +  V   + +  +        ++  
Sbjct: 362 EKEDILTGMTAVITVRLPEPEFEGQTKEALGSAKVKPIVTKVVTEELEAKLNSRKREDKN 421

Query: 414 EATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
           + + LL+ ++     RL  R  +E   RK A+    LP KL DC  +    +ELFIVEGD
Sbjct: 422 QVSALLDKIVAEMRSRLSARLSKEITRRKNALETSTLPTKLVDCRSDDVEKSELFIVEGD 481

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           SA G+AK ARN   QA+ P+RGKILNV   G+ ++  N +   ++Q LG  +   +    
Sbjct: 482 SALGTAKAARNSEFQALFPIRGKILNVQKTGTAQMLANAECAAIIQVLGAGSGRTFDISQ 541

Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT---QGT--- 586
            RY KVI+MTDADVDGAHI +LLLT F++ M  +I    +F   PPL RI    +G    
Sbjct: 542 ARYGKVIMMTDADVDGAHIRTLLLTLFFRYMRPMIAAGRVFAAVPPLHRIQVNAKGKTPG 601

Query: 587 KSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645
           + +Y + E+   K L + ++ G+  K  I R+KGLGEM A QL ET MD   RTL R+ +
Sbjct: 602 EFLYTYSEDQLHKELGKLEQTGRTYKEPIQRYKGLGEMDADQLAETTMDPQHRTLRRIRL 661

Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           + +  ++   ++    LMG+    R +FI E AS +D
Sbjct: 662 SDE-AAVNRAEEVFELLMGSAVPPRREFIIEGASKLD 697


>gi|167035957|ref|YP_001671188.1| DNA topoisomerase IV subunit B [Pseudomonas putida GB-1]
 gi|166862445|gb|ABZ00853.1| DNA topoisomerase IV, B subunit [Pseudomonas putida GB-1]
          Length = 634

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 247/653 (37%), Positives = 363/653 (55%), Gaps = 27/653 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            AN SAS  Y+A +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A
Sbjct: 1   MANPSASA-YNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHA 56

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             ++V L  +  L V D+GRG+PV+ HP+    S +E+ILT LHAGGKF N  Y+ SGGL
Sbjct: 57  RSVQVILHADHSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213
           HGVGISVVNALS ++ V V R    +   F+ G   S LE    V +   GT + F PDP
Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYQMTFADGFKASELEVVGSVGKRNTGTSVYFSPDP 175

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     F  +RL  + ++KA L   +   +             EK E+++  GL++YL
Sbjct: 176 KYFDSA-KFSISRLKHVLKAKAVLCPGLLVTFEDK-------ASGEKVEWHYEDGLRSYL 227

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHE 331
              +     +  E F G        +  V+WA+ W  E  +    SY N I T +GGTH 
Sbjct: 228 VDSVSEFLRLPDEPFCGSLAGN---KEAVDWALLWLPEGGDSIQESYVNLIPTAQGGTHV 284

Query: 332 SGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           +GLR  L   ++++ E      R + +  +D+      +LS+ ++EP+F+GQTK +L S 
Sbjct: 285 NGLRQGLLDAMREFCEFRNLLPRGVKLAPEDIWERISFVLSMKMQEPQFSGQTKERLSSR 344

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
           +A   V   ++D F  +L  +P    +L E  I  +  RL+    ++V RK   +   LP
Sbjct: 345 EAAAFVSGVVKDAFSLWLNAHPELGMQLAELAISNAGRRLK--ASKKVERKRITQGPALP 402

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC+       ELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN       ++  +
Sbjct: 403 GKLADCAGQDPMRAELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLAS 462

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           Q++ ++  A+G    +      LRY K+ I+ DAD DG HIA+LL   F Q    L+E  
Sbjct: 463 QEVHNIAVAIGVDPGATDL-AQLRYGKICILADADSDGLHIATLLCALFVQHFRALVEAG 521

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLK 629
           H+++  PPL+RI  G +  YA DE  +  IL+    +  +GK +++RFKGLGEM   QL+
Sbjct: 522 HVYVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLR 581

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           ET MD N R L+++ ++    + +        L   +A +R  +++ + +  +
Sbjct: 582 ETTMDPNTRRLVQLTLDDVEATCELMDKL---LAKKRAGDRKSWLETKGNLAE 631


>gi|300947540|ref|ZP_07161717.1| DNA gyrase, B subunit [Escherichia coli MS 116-1]
 gi|300452877|gb|EFK16497.1| DNA gyrase, B subunit [Escherichia coli MS 116-1]
          Length = 804

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 228/574 (39%), Positives = 347/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEGIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|308188762|ref|YP_003932893.1| DNA gyrase subunit B [Pantoea vagans C9-1]
 gi|308059272|gb|ADO11444.1| DNA gyrase subunit B [Pantoea vagans C9-1]
          Length = 802

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 225/566 (39%), Positives = 348/566 (61%), Gaps = 18/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ + I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L +T+ R+  +  Q +  G+P +PL       +  GTR+ F P  + F + 
Sbjct: 121 SVVNALSQKLELTIRREGKVHQQIYVHGVPEAPLAVTGDT-DITGTRVRFWPSYETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++        + + F++ GG+K +++   +N
Sbjct: 180 RDFEYEILAKRLRELSFLNSGVSIRLEDKRD-------GKTDHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   +F   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPTVFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLAEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +E+++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+  +Q++  
Sbjct: 410 CQERDPALSEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  D+E   + 
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQY 555



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ +E   K  +  + + R+KGLGEM   QL ET MD + R +LRV I   +       
Sbjct: 717 FEQAIEWLVKESRRGLSVQRYKGLGEMNPDQLWETTMDPDSRRMLRVTIKDAIG----AD 772

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 773 QLFTTLMGDAVEPRRAFIEENALKAANID 801


>gi|146284122|ref|YP_001174275.1| DNA topoisomerase IV subunit B [Pseudomonas stutzeri A1501]
 gi|145572327|gb|ABP81433.1| DNA topoisomerase IV, B subunit [Pseudomonas stutzeri A1501]
          Length = 670

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 247/681 (36%), Positives = 363/681 (53%), Gaps = 29/681 (4%)

Query: 12  LPPQSQGSSEKLKKSGEIPDSPAFANQSASD---NYDASSIRILEGLEPVRMRPGMYIGG 68
            P + Q  S         P +   +    S    +Y A +I +L GL+PVR RPGMY   
Sbjct: 10  SPGELQRWSPAGALVFSRPLAADCSEHKDSARQMSYTAEAIEVLSGLDPVRKRPGMY--- 66

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           TD    +HL  EVIDN++DE +AG+A  ++V L  +  L V+D+GRG+PV+ HP+     
Sbjct: 67  TDTSRPNHLAQEVIDNSVDEALAGHARAVQVILHQDSSLEVIDDGRGMPVDIHPE-EGVP 125

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
            +E+ILT LHAGGKF N  Y+ SGGLHGVGISVVNALS  + VTV R  + +   F+ G 
Sbjct: 126 GVELILTKLHAGGKFSNKNYQFSGGLHGVGISVVNALSTRVEVTVKRDGSEYRMSFAGGF 185

Query: 189 PLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247
             + LE    V +   GT + F  DPK F     F   RL  + ++KA L   +   +  
Sbjct: 186 KATDLEVIGSVGKRNTGTSVRFWADPKYFDSP-KFSITRLKHVLKAKAVLCPGLSVSFED 244

Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307
                      EK E+++  GL++YL   +     +  E F G           V+WA+ 
Sbjct: 245 K-------STGEKVEWHYEDGLRSYLVDSVSEYQRLPDEPFVGALAGNTE---AVDWALL 294

Query: 308 WCEENPE--ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMI 364
           W  E  E    SY N I T +GGTH +GLR  L   ++++ E      R + +  +D+  
Sbjct: 295 WLPEGGESVQESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNLLPRGLKLAPEDIWE 354

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
               +LS+ ++EP+F+GQTK +L S +A   V   ++D F  +L  +P    +L E  I 
Sbjct: 355 RIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGVVKDAFSLWLNAHPELGMQLAELAIS 414

Query: 425 RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
            +  RL+    ++V RK   +   LPGKLADC+       ELF+VEGDSAGGSAKQAR++
Sbjct: 415 NAGRRLK--AGKKVERKKITQGPALPGKLADCAGQDPMRAELFLVEGDSAGGSAKQARDK 472

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA++PLRGKILN       ++  +Q++ D+  A+G    +      LRY K+ I+ DA
Sbjct: 473 EFQAIMPLRGKILNTWEVDGGEVLASQEVHDIAVAIGVDPGATDL-AQLRYGKICILADA 531

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           D DG HIA+LL   F Q    L+E  H+++  PPL+RI  G    YA DE  +  ILE  
Sbjct: 532 DSDGLHIATLLCALFVQHFRPLVEAGHVYVAMPPLYRIDLGKDIFYALDEAERDGILERL 591

Query: 605 KKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLM 663
                +GK +++RFKGLGEM   QL+ET MD N R L+++ ++    + +        L 
Sbjct: 592 VAEKRRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDFEGTREVMDML---LA 648

Query: 664 GTKADERFKFIQERASFIDDV 684
             +A +R  +++ + +  + +
Sbjct: 649 KKRAGDRKSWLESKGNLAEVL 669


>gi|293390763|ref|ZP_06635097.1| DNA gyrase, B subunit [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951297|gb|EFE01416.1| DNA gyrase, B subunit [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 806

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 229/570 (40%), Positives = 350/570 (61%), Gaps = 19/570 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           + +  + Y A+SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY +
Sbjct: 2   STNTPETYGANSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCD 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V D+GRGIPV+ HP+    S  E+I+T LHAGGKFD+++Y++SGGLH
Sbjct: 62  DIVVTIHSDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD+L +T+ RQ  +  Q +S G P +PL    +   + GT + F P P I
Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGKVHEQFYSLGDPQAPLVVIGETT-QTGTTVRFWPSPTI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   F+   L K  +  ++L+  V      ++         +++ F++ GG++ +++ 
Sbjct: 180 FTNI-EFEYDILAKRLRELSFLNSGVSIRLIDER-------TDKQDHFHYEGGIQAFVEY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
               ++ I  + F    EK G     VE A+ W +     I  + N I   +GGTH +G 
Sbjct: 232 INRGKTPIHPKSFYFSAEKDGI---GVEIALQWNDGYAENIYCFTNNIPQRDGGTHLAGF 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R A+TR +  Y E      K  ++   DD     V ++SV + +P+F+ QTK KLVS + 
Sbjct: 289 RGAMTRTLNNYMENEGYTKKSKVATSGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEV 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451
           +  VE+ + +    YL++NP +   ++  +I+ +  R   RK R    RK A+    LPG
Sbjct: 349 KSAVESLMNEYLQTYLLENPNDVKIIVTKIIDAARAREAARKAREMTRRKGALDLGGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++ 
Sbjct: 409 KLADCQERDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSA 468

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ 
Sbjct: 469 EVGTLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKI 600
           ++++  PPL+++ +G +  Y  D+E   + 
Sbjct: 529 YVYIAQPPLYKVKKGKQEQYIKDDEAMAEF 558



 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ +E   K  +  + I R+KGLGEM   QL ET MD N R +L+V I   +       
Sbjct: 722 FEQAIEWLMKESRRGLMIQRYKGLGEMNPEQLWETTMDPNIRRMLKVSIKDAV----AAD 777

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG + + R  FI+  A    ++ 
Sbjct: 778 QLFTTLMGDEVEPRRDFIESNALRA-NLD 805


>gi|289662651|ref|ZP_06484232.1| DNA topoisomerase IV subunit B [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 629

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 242/642 (37%), Positives = 362/642 (56%), Gaps = 25/642 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y+A+ I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AG+A  +EV+L  
Sbjct: 5   YNAADIEVLSGLDPVKRRPGMY---TDTARPNHLAQEVIDNSVDEALAGHAKQVEVTLYK 61

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G   V D+GRG+PV+ HP+      +E+ILT LHAGGKF+N  Y  SGGLHGVG+SVVN
Sbjct: 62  DGSCEVSDDGRGMPVDIHPE-EKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVSVVN 120

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222
           ALS ++ + + R+ +    +F  G   S LE    V +   GTR+ F  DPK F     F
Sbjct: 121 ALSTKVELFIKREGSEHRMEFRDGNAASKLEVVGTVGKKNTGTRLRFWADPKYFDTP-KF 179

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L  + ++KA L   +      +          E++ +YF  GL+ YL+ ++    +
Sbjct: 180 NVRALRHLLRAKAVLCPGLTVKLHDE-------ATGEQDSWYFENGLRDYLKGEMAEHEM 232

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRG 341
           + +E+F G  +K       V+WA AW  E      SY N I T + GTH +GLR  LT  
Sbjct: 233 LPAELFVGSLKKDTEI---VDWAAAWVPEGELVQESYVNLIPTAQHGTHVNGLRSGLTDA 289

Query: 342 IKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
           ++++ +      R + +  +D+      +LS+ + +P+F+GQTK +L S  A   +E A 
Sbjct: 290 LREFCDFRNLLPRGVKLAPEDVWDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAA 349

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
            D F  YL QN     K+ +  I+R+  RL+   ++++ RK   +   LPGKLADC    
Sbjct: 350 HDAFSLYLNQNVEIGEKIAQIAIDRASARLK--TEKQIVRKKVTQGPALPGKLADCISQD 407

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              TELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN     S  +  ++++ +L  A+
Sbjct: 408 LSRTELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASEEVHNLAIAI 467

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           GC          LRY KV+I+ DAD DG HIA+LL   F Q    L+   H+F+  PPLF
Sbjct: 468 GCDPGKDDI-TGLRYGKVVILADADSDGLHIATLLTALFLQHFPALVAAGHVFVAMPPLF 526

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           R+  G +  YA DEE K  +L++  +   KG+I ++RFKGLGEM   QL+E+ +  + R 
Sbjct: 527 RVDVGKQVFYALDEEEKTTLLDKIAREKMKGQISVTRFKGLGEMNPQQLRESTIHPDTRR 586

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           L+++ I+    +          L   +A +R ++++ +    
Sbjct: 587 LVQLTIDDGEQTRSLMDML---LAKKRASDRKQWLEAKGDLA 625


>gi|288932896|ref|YP_003436955.1| DNA gyrase subunit beta [Klebsiella variicola At-22]
 gi|288887625|gb|ADC55943.1| DNA gyrase, B subunit [Klebsiella variicola At-22]
          Length = 804

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 230/574 (40%), Positives = 350/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHSDNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R N +  Q +  G+P +PL    +  +K GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQRDNKVHKQIYVHGVPQAPLAVTGET-DKTGTMVRFWPSHETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQIAIALDG 563



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD + R +LRV +   +       
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPDQLWETTMDPDSRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|206576571|ref|YP_002235889.1| DNA gyrase, B subunit [Klebsiella pneumoniae 342]
 gi|206565629|gb|ACI07405.1| DNA gyrase, B subunit [Klebsiella pneumoniae 342]
          Length = 804

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 230/574 (40%), Positives = 350/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHSDNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R N +  Q +  G+P +PL    +  +K GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQRDNKVHKQIYVHGVPQAPLAVTGET-DKTGTMVRFWPSHETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQIAIALDG 563



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD + R +LRV +   +       
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPDQLWETTMDPDSRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|187778654|ref|ZP_02995127.1| hypothetical protein CLOSPO_02249 [Clostridium sporogenes ATCC
           15579]
 gi|187772279|gb|EDU36081.1| hypothetical protein CLOSPO_02249 [Clostridium sporogenes ATCC
           15579]
          Length = 651

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 225/659 (34%), Positives = 352/659 (53%), Gaps = 34/659 (5%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +YD + +  LE LEPVR+RPGMYIG T  K LHH   E++DNA+DE+  GY N  EV 
Sbjct: 8   TKDYDVTKLTSLEKLEPVRVRPGMYIGSTGTKGLHHCIWEILDNAIDEISNGYGNTAEVI 67

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L+ +  +TVVDNGRGIP   HP    KS +E++ T LH GGKF+NS Y+ SGGLHGVG S
Sbjct: 68  LNKDKSVTVVDNGRGIPTGIHP-IKKKSGVEMVFTELHTGGKFNNSIYKTSGGLHGVGAS 126

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV----------RNKRGTRITFR 210
           VVNALS+   V V +   I+ Q+F   I     +K               +K GT++TF+
Sbjct: 127 VVNALSEWTEVEVFQNGKIYKQRFEYAIDKKLNKKMPGTPVTKLKVIQDTDKTGTKVTFK 186

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PD ++F     F    + +  Q  A+ +  +      +++       PE +E++   GL 
Sbjct: 187 PDKEVFST-IDFKFDVIDERLQELAFQNKGITLKLIDNRK-----EEPEIKEYHSERGLL 240

Query: 271 TYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
            ++    E+++ I +     + EK+    +   E    + + +   I SY N I T E G
Sbjct: 241 DFIDYLNESKTPIHNPAVLFEGEKEINNLKMEGEICFQFTDSSTENIASYVNNIPTTEAG 300

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           THE+G +  +TR  K+ A+      ++      DDL      I+ + I  P F GQTKTK
Sbjct: 301 THETGFKTGMTRAFKEGAKKLNLIKEKDKEFDGDDLREGITAIVRIKISNPVFEGQTKTK 360

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           L + +A   + +     F  ++  N   +T ++   +  +  R + +K  E   +K    
Sbjct: 361 LGNNEAYTMMNDLAYTKFLEWIEDNKEISTLIINNALAAAARREKIKKINEAEKKKIGKG 420

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              L GK+A C+   ++ TE  +VEGDSAGGSAKQAR+R  Q+++P +GKI+N      E
Sbjct: 421 LAPLAGKIAVCTLRDSNVTEFIVVEGDSAGGSAKQARDRRFQSIMPSKGKIMNTEKQKIE 480

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
            +  ++++     A+G      Y+E+DL+Y+K+II++DADVDG HI +L +T+ Y+ M  
Sbjct: 481 NVLGSEELKIFNTAIGTGVLDNYKEQDLKYDKIIILSDADVDGYHIRTLWMTYIYRYMKS 540

Query: 566 LIEQKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
           L+   HL++  PPL+++ +      KS+Y +++E  +K  ++  K       I R+KGLG
Sbjct: 541 LVANGHLYIAMPPLYKVYKKDKKSEKSIYCYNDEELEKAKKQIGK----GYLIQRYKGLG 596

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           EM   QL ET ++   RTL R+ I          +  ++ LMG   + R  ++ + A F
Sbjct: 597 EMNPEQLWETTLNPETRTLQRITIED----AAKAEKMVSLLMGDVVEPRKNYLYKYAEF 651


>gi|195537257|dbj|BAG68217.1| DNA gyrase subunit B [Glaciibacter superstes]
 gi|195537259|dbj|BAG68218.1| DNA gyrase subunit B [Glaciibacter superstes]
          Length = 621

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 236/628 (37%), Positives = 347/628 (55%), Gaps = 17/628 (2%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIG T  + LHHL SE++DN++DE +AGY + I++ +  +G + V DNGRGIPV+ + K
Sbjct: 1   MYIGSTGPRGLHHLVSEIVDNSVDEALAGYCDTIDIRILADGAIRVEDNGRGIPVDIN-K 59

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
              +ST+E++LT LHAGGKF    Y +SGGLHGVG SVVNALS  L V V RQ  ++ Q 
Sbjct: 60  AQGRSTVEVVLTVLHAGGKFGGGGYAVSGGLHGVGSSVVNALSSRLEVEVRRQGHVWRQS 119

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           F+ GIP +PL+K E+     GT ITF P  + F     FD   L    Q  A+L+  ++ 
Sbjct: 120 FADGIPDAPLKKGEESAE-TGTIITFWPSAETFETI-EFDYETLRVRFQQMAFLNKGLRL 177

Query: 244 CWSCDK-EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR-GT 301
             + ++ + A++ G P    F +  GL  Y++     R            E + T R   
Sbjct: 178 TLTDERPDQADEEGGPVVNSFMYEQGLVDYVEYLNRVRKAELVNDEIISFESEDTDRKIA 237

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISII 358
           +E A+ W       + +Y NTI T EGGTHE G R ALT  I KYA       ++  ++ 
Sbjct: 238 LEVAMQWTTSYTESVHTYANTINTHEGGTHEEGFRAALTTLINKYAREKGILKEKDDNLS 297

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+      ++S+ + EP+F GQTKTKL + +A+  V+    D    +  +NPI+A ++
Sbjct: 298 GDDVREGLTAVISIKLAEPQFEGQTKTKLGNTEAKSFVQKVASDQLADWFARNPIQAKEI 357

Query: 419 LEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           +   ++ +  R+  RK RE  R+  +     +PGKL DC       +E+FIVEGDSAGGS
Sbjct: 358 IRKALQAATARMAARKARETARRKGLLEGGGMPGKLKDCQSKDPSISEIFIVEGDSAGGS 417

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           A Q RN   QA+LPLRGKILNV  A  ++   N ++  ++ A G      +  + +RY K
Sbjct: 418 AVQGRNPETQAILPLRGKILNVEKARLDRALGNNEVQAMITAFGAGIGEDFNPDKVRYHK 477

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEH 596
           +++M DADVDG HI +LLLT  ++ M  LI+  +++L  PPL+R+        Y + +  
Sbjct: 478 IVLMADADVDGQHITTLLLTLLFRYMRPLIDLGYVYLAQPPLYRLKWSNSPHEYVYSDLE 537

Query: 597 KQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
           +  +L +    GK   +   I R+KGLGEM   +L ET M    RTLL+V ++       
Sbjct: 538 RDALLADGAAAGKRIPKDNGIQRYKGLGEMDYKELWETTMAPETRTLLQVTLDD----AA 593

Query: 654 DTQDSINKLMGTKADERFKFIQERASFI 681
              +  + LMG   + R  FIQ+ A  +
Sbjct: 594 AADEIFSTLMGEDVESRRNFIQKNAKDV 621


>gi|92114662|ref|YP_574590.1| DNA topoisomerase IV subunit B [Chromohalobacter salexigens DSM
           3043]
 gi|91797752|gb|ABE59891.1| DNA topoisomerase IV subunit B [Chromohalobacter salexigens DSM
           3043]
          Length = 626

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 242/644 (37%), Positives = 346/644 (53%), Gaps = 27/644 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y ASSI +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A+ I V L 
Sbjct: 3   QYSASSIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHASHIRVRLH 59

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G + V D+GRG+P++ HP+    S +E+ILT LHAGGKF  S+Y  SGGLHGVG+SVV
Sbjct: 60  DDGGIEVSDDGRGMPIDMHPEH-GVSGVELILTRLHAGGKFSQSSYRFSGGLHGVGVSVV 118

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221
           NALS  L + V R        F+ G  +  L       +  +GT + F PD + + D   
Sbjct: 119 NALSRRLEIEVCRDGDRHGMAFAHGDKVEDLTVIGTCSKKAKGTVVRFWPD-ESYFDSPR 177

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
               RL  + ++KA L   ++                 +  + +  GL+ YL    ++  
Sbjct: 178 LALPRLKHLLRAKAVLCPGLEVTLI--------EADGTESVWQYADGLRDYLAQATDDVE 229

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALT 339
            + +  F G  E +      V+WAI W  E  E    SY N I T  GGTH +GLR  L 
Sbjct: 230 TLPASPFLGHFEDED---QGVDWAIQWLPEGGELLQESYVNLIPTPLGGTHVNGLRSGLL 286

Query: 340 RGIKKYAEL-TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E  +   R + +  DDL      +LSV + +P+FAGQTK +L S      V  
Sbjct: 287 DALREFCEYRSLLPRGVKLTGDDLWERVSFVLSVKLLDPQFAGQTKERLSSRVVAGFVSG 346

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L  +  +A  L E VI  ++ R +    ++V RK       LPGKLADCS 
Sbjct: 347 VVKDAFSLWLNHHVDQAEALAELVINAAQRRQK--SAKKVARKKVTSGPALPGKLADCSG 404

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +ELF+VEGDSAGGSAKQAR+R  QA+LPLRGKILN     +  I  +Q++ D+  
Sbjct: 405 QDPAASELFLVEGDSAGGSAKQARDRETQAILPLRGKILNTWEVEAHDIYGSQEVHDIAV 464

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+F+  PP
Sbjct: 465 AIGMDPGSDDL-SKLRYHKICILADADSDGLHIATLLCALFVRHFPALVDAGHVFVAMPP 523

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+RI  G +  YA DE  K  IL+  +   +G   + RFKGLGEM   QL+ET M A+ R
Sbjct: 524 LYRIDLGKEVHYALDESEKTAILKRLEGK-RGTPNVQRFKGLGEMSPLQLRETTMAADTR 582

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            L+++ +     + +        L   +A +R  ++++  +  D
Sbjct: 583 RLVQLTLTVGDGTREMMDML---LAKKRAGDRKNWLEDYGNLAD 623


>gi|85057982|ref|YP_453684.1| DNA gyrase subunit B [Sodalis glossinidius str. 'morsitans']
 gi|84778502|dbj|BAE73279.1| DNA gyrase subunit B GyrB [Sodalis glossinidius str. 'morsitans']
          Length = 804

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 229/574 (39%), Positives = 346/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            +  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  KIHEDNSVSVQDDGRGIPTGIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L + + R+  +  Q +  G+P SPLE   +  ++ GT + F P    F + 
Sbjct: 121 SVVNALSEKLELMIKREGKVHQQTYHAGVPQSPLEVVGET-DQTGTTVRFWPSFVTFTNN 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V       +   E       + F++ GG+K +++   +N
Sbjct: 180 TEFQYEILAKRLRELSFLNSGVSIRLRDKRNDKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   +F   TEK G     VE A+ W +     I  + N I   +GG H +G R A+
Sbjct: 233 KTPIHPNVFYFSTEKDGI---GVEIALQWNDGFQENIYCFTNNIPQRDGGAHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNSYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+ + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 350 ESLMNERLVEYLLENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE  H+F+
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIELGHVFI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQIALAMDG 563



 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ LE   K  +  + + R+KGLGEM   QL ET MD + R +LRV +   +       
Sbjct: 719 FEQALEWLVKESRRGLAVQRYKGLGEMNPEQLWETTMDPDSRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|152980258|ref|YP_001352397.1| DNA topoisomerase IV subunit B [Janthinobacterium sp. Marseille]
 gi|151280335|gb|ABR88745.1| topoisomerase IV subunit B [Janthinobacterium sp. Marseille]
          Length = 661

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 254/674 (37%), Positives = 368/674 (54%), Gaps = 42/674 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            A + +S +Y  SSIR+L+GLEPV+ RPGMY   T  +   H+  EVIDNA DE + GY 
Sbjct: 1   MATKKSSADYSESSIRVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYC 57

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST---YEIS 151
             I V+L+ +G ++V D+GRGIPV  HP+     T+EI+ T LHAGGKFD  +   Y  S
Sbjct: 58  KNIVVTLNTDGSVSVEDDGRGIPVGLHPE-EKVPTVEIVFTRLHAGGKFDKGSGGAYAFS 116

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN--KRGTRITF 209
           GGLHGVG+SV NALS  L +TV R+N + S  F+ G  + PL+ +   R+  + GTR+T 
Sbjct: 117 GGLHGVGVSVTNALSTRLEITVWRENGVHSLAFAGGDVVEPLKSRPLTRDEKRSGTRVTA 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD K F        A L ++ +SKA L   VK      K         E + + +  GL
Sbjct: 177 WPDAKYFDSSV-IPQAELQRLLRSKAVLLPGVKVTLVHAKS-------GETQTWQYDQGL 228

Query: 270 KTYLQTKLENRSLISSEIFTGKTEK------KGTHRGT-VEWAIAWCEENP-EITSYCNT 321
           + YL   L   S   + I   + E+      +G   G    W +AW E+      SY N 
Sbjct: 229 RGYLTESLAQASNSETLIPLFEGEQYAGADAEGFAEGEGAAWVVAWTEDGAVVRESYVNL 288

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFA 380
           I T  GGTHESGLR  L   +K + E+     + + ++ +D+      +LS  + +P+F 
Sbjct: 289 IPTSNGGTHESGLREGLFGAVKSFVEMHSLLPKGVKLLPEDVFARVSFVLSAKVLDPQFQ 348

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQ K +L S DA R V +  R   + +L Q+     KL E VI++++ RLR  ++ E  +
Sbjct: 349 GQIKERLNSRDAVRLVASFTRPSLELWLNQHVEYGKKLAELVIKQAQSRLRSAQKVEKKK 408

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
            + +  L  PGKL DC        ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN  
Sbjct: 409 SSGVAVL--PGKLTDCESTDISRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNSW 466

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLLT 557
               +++  N +I D+  A+G     +       +LRY ++ I++DADVDG+HI  LLLT
Sbjct: 467 ETERDRLFANNEIHDIAVAIGVDPHGKNDTVDLSNLRYGRICILSDADVDGSHIQVLLLT 526

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--K 609
            F++    LI++ H+ +  PPL+R+    +G K    +YA D+   + I ++ +K G  +
Sbjct: 527 LFFKHFPQLIDRGHICIARPPLYRVDAPARGKKPVQKIYALDDGELEAIEDKLRKDGVKE 586

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KAD 668
               ISRFKGLGEM A QL ET M+ + R LL V + +      +     N LMG  +A 
Sbjct: 587 NAWTISRFKGLGEMNAEQLWETTMNPDTRRLLPVSLGEFDLDFSEA--RFNMLMGKGEAA 644

Query: 669 ERFKFIQERASFID 682
            R  +I+E  +  +
Sbjct: 645 ARRTWIEEHGNEAE 658


>gi|238783051|ref|ZP_04627078.1| DNA gyrase subunit B [Yersinia bercovieri ATCC 43970]
 gi|238716052|gb|EEQ08037.1| DNA gyrase subunit B [Yersinia bercovieri ATCC 43970]
          Length = 804

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 226/574 (39%), Positives = 346/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+ YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHSDNSVSVQDDGRGIPTGLHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L + + R+  +  Q +  G+P +PL+   +  +  GT + F P  + F + 
Sbjct: 121 SVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DLTGTTVRFWPSFETFTNN 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V       +   E       + F++ GG+K +++   +N
Sbjct: 180 TEFQYEILAKRLRELSFLNSGVSIKLKDKRNDRE-------DHFHYEGGIKAFVEYLSKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  ++F   T K       VE A+ W +     I  + N I   +GGTH  G R A+
Sbjct: 233 KNPIHPKVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  IS   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 350 ETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+F+
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D++  ++        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDDAMEQYQMSLALDG 563



 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            +  L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEDALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPTSRRMLRVMVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALRAANID 803


>gi|119475370|ref|ZP_01615723.1| DNA topoisomerase IV, B subunit [marine gamma proteobacterium
           HTCC2143]
 gi|119451573|gb|EAW32806.1| DNA topoisomerase IV, B subunit [marine gamma proteobacterium
           HTCC2143]
          Length = 627

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 248/646 (38%), Positives = 363/646 (56%), Gaps = 26/646 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y+A SI +L GL+PVR RPGMY   T+    +HL  EVIDN++DE +AG+A+ I+V +
Sbjct: 2   SDYNAGSIEVLTGLDPVRKRPGMY---TETTRPNHLAQEVIDNSVDEALAGFAHQIDVIM 58

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G LT  D+GRG+PV+ HP+   K  +E+ILTTLHAGGKF++  Y+ SGGLHGVG+SV
Sbjct: 59  HKDGSLTCSDDGRGMPVDMHPEQ-KKPGVEVILTTLHAGGKFNSDNYQFSGGLHGVGVSV 117

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  L +T+ R   ++  +F  G     LE  +   +   GT I F PD   F    
Sbjct: 118 VNALSKLLEITIRRDGEVYKMEFKNGDKSKDLEVIDSCGKRNTGTSIRFTPDGSYFDSA- 176

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  AR+  + ++KA L   ++     +          EKEE+++  GL+ Y+       
Sbjct: 177 KFSVARMKHVLRAKAVLCPGLRVTCLDE-------ASGEKEEWHYEDGLRDYMVASTHGW 229

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +  E F G           V+WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 230 ETLPKEPFIGSFSGSNE---GVDWAVQWLPEGGELTTESYVNLIPTAQGGTHVNGLRTGL 286

Query: 339 TRGIKKYAEL-TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              I+++ E  +   R I +  DD+      +LS  + +P+F+GQTK +L S +A   V 
Sbjct: 287 LEAIREFCEFRSLLPRGIKLSPDDIWDKCCYVLSSKLEDPQFSGQTKERLSSREAAAFVS 346

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
              +D F  +L Q+  +A KL +  I  ++ R+++ K  +V RK       LPGKLADCS
Sbjct: 347 GVAKDSFSLWLNQHTEDAEKLADMCINNAQSRMKKSK--KVARKKVTSGPALPGKLADCS 404

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
            N     ELF+VEGDSAGGSAKQ R+R  QA+LPLRGKILN     S++I  ++++ ++ 
Sbjct: 405 GNDVERGELFLVEGDSAGGSAKQGRDRQYQAILPLRGKILNTWEIDSQEILASEEVHNIA 464

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S      LRY KV I+ DAD DG HIA+L+   F +    L++  H+F+  P
Sbjct: 465 VAIGVDPASDDL-SGLRYHKVCILADADSDGLHIATLICALFVRHFRPLVQAGHVFVAMP 523

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFK-KHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PL+RI  G    YA D+  KQ IL+  + ++ KGK+ + RFKGLGEM   QL+ET M  +
Sbjct: 524 PLYRIDVGKDVYYALDDSEKQGILDRIEAENKKGKVNVQRFKGLGEMNPLQLRETVMSGD 583

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            R L+R+ I     + +        L   ++ +R  +++E+ +  +
Sbjct: 584 TRRLVRLSIESGDETNQLMDML---LAKKRSGDRKIWLEEKGNLAE 626


>gi|325916059|ref|ZP_08178349.1| DNA topoisomerase IV subunit B [Xanthomonas vesicatoria ATCC 35937]
 gi|325537735|gb|EGD09441.1| DNA topoisomerase IV subunit B [Xanthomonas vesicatoria ATCC 35937]
          Length = 629

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 242/642 (37%), Positives = 363/642 (56%), Gaps = 25/642 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y+A+ I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AG+A  +EV+L  
Sbjct: 5   YNAADIEVLSGLDPVKRRPGMY---TDTARPNHLAQEVIDNSVDEALAGHAKQVEVTLYK 61

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G   V D+GRG+PV+ HP+      +E+ILT LHAGGKF+N  Y  SGGLHGVG+SVVN
Sbjct: 62  DGSCEVSDDGRGMPVDMHPE-EKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVSVVN 120

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222
           ALS ++ + + R+ +    +F  GI  S LE    V +   GTR+ F  DPK F     F
Sbjct: 121 ALSTKVELFIKREGSEHRMEFRDGIAASKLEVVGTVGKKNTGTRLRFWADPKYFDTP-KF 179

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L  + ++KA L   +      +          E++ +YF  GL+ YL+ ++    +
Sbjct: 180 NVRALRHLLRAKAVLCPGLTVKLHDE-------ATGEQDSWYFENGLRDYLKGEMAEHEM 232

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRG 341
           + +++F G  +K       V+WA AW  E      SY N I T + GTH +GLR  LT  
Sbjct: 233 LPADLFAGSLKKDTEI---VDWAAAWVPEGELVQESYVNLIPTAQHGTHVNGLRSGLTDA 289

Query: 342 IKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
           ++++ +      R + +  +D+      +LS+ + +P+F+GQTK +L S  A   +E A 
Sbjct: 290 LREFCDFRNLLPRGVKLAPEDVWDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAA 349

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
            D F  YL QN     K+ +  I+R+  RL+   ++++ RK   +   LPGKLADC    
Sbjct: 350 HDAFSLYLNQNVEIGEKIAQIAIDRASARLK--TEKQIVRKKVTQGPALPGKLADCISQD 407

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              TELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN     S  +  ++++ +L  A+
Sbjct: 408 LSRTELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASEEVHNLAIAI 467

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           GC          LRY KV+I+ DAD DG HIA+LL   F Q    L+   H+F+  PPLF
Sbjct: 468 GCDPGKDDI-TGLRYGKVVILADADSDGLHIATLLTALFLQHFPALVAAGHVFVAMPPLF 526

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           R+  G +  YA DEE K  +L++  +   KG+I ++RFKGLGEM   QL+E+ +  + R 
Sbjct: 527 RVDVGKQVFYALDEEEKTTLLDKIAREKMKGQISVTRFKGLGEMNPQQLRESTIHPDTRR 586

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           L+++ I+    +          L   +A +R ++++ +    
Sbjct: 587 LVQLTIDDGEQTRSLMDML---LAKKRAGDRKQWLESKGDLA 625


>gi|238797842|ref|ZP_04641334.1| DNA gyrase subunit B [Yersinia mollaretii ATCC 43969]
 gi|238718258|gb|EEQ10082.1| DNA gyrase subunit B [Yersinia mollaretii ATCC 43969]
          Length = 804

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 226/574 (39%), Positives = 346/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+ YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHSDNSVSVQDDGRGIPTGLHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L + + R+  +  Q +  G+P +PL+   +  +  GT + F P  + F + 
Sbjct: 121 SVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DLTGTTVRFWPSFETFTNN 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V       +   E       + F++ GG+K +++   +N
Sbjct: 180 TEFQYEILAKRLRELSFLNSGVSIKLKDKRNDRE-------DHFHYEGGIKAFVEYLSKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  ++F   T K       VE A+ W +     I  + N I   +GGTH  G R A+
Sbjct: 233 KNPIHPKVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  IS   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 350 ETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+F+
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D++  ++        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDDAMEEYQMSLALDG 563



 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            +  L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEDALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPTSRRMLRVMVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALRAANID 803


>gi|304398065|ref|ZP_07379940.1| DNA gyrase, B subunit [Pantoea sp. aB]
 gi|304354351|gb|EFM18723.1| DNA gyrase, B subunit [Pantoea sp. aB]
          Length = 802

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 225/566 (39%), Positives = 349/566 (61%), Gaps = 18/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ + I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEE-EGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L +T+ R+  +  Q +  G+P SPL    +  +  GTR+ F P  + F + 
Sbjct: 121 SVVNALSQKLELTIRREGKVHQQVYVHGVPQSPLAVTGET-DITGTRVRFWPSHETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++        + + F++ GG++ +++   +N
Sbjct: 180 RDFEYDILAKRLRELSFLNSGVSIRLEDKRD-------GKNDHFHYEGGIRAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   +F   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPTVFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLAEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +E+++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+  +Q++  
Sbjct: 410 CQERDPALSEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  D+E   + 
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQY 555



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ +E   K  +  + + R+KGLGEM   QL ET MD + R +LRV I   +       
Sbjct: 717 FEQAIEWLVKESRRGLSVQRYKGLGEMNPDQLWETTMDPDSRRMLRVTIKDAIG----AD 772

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 773 QLFTTLMGDAVEPRRAFIEENALKAANID 801


>gi|296118608|ref|ZP_06837186.1| DNA gyrase, B subunit [Corynebacterium ammoniagenes DSM 20306]
 gi|295968507|gb|EFG81754.1| DNA gyrase, B subunit [Corynebacterium ammoniagenes DSM 20306]
          Length = 666

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 237/677 (35%), Positives = 353/677 (52%), Gaps = 67/677 (9%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIG T  + LHHL  EV+DN++DE +AG+A+ + V L  +G + V D+GRGIPV  H  
Sbjct: 1   MYIGSTGPRGLHHLIWEVVDNSVDEAMAGHASKVIVRLMEDGGVEVTDDGRGIPVGMH-- 58

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
                T+++++T LHAGGKFD+ +Y ISGGLHGVGISVVNALS  +   +      + Q 
Sbjct: 59  ASGAPTVQVVMTQLHAGGKFDSDSYAISGGLHGVGISVVNALSTRVEAEIKTDGKHWYQV 118

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           F+  IP    E         GT+I F  DP+IF     +D   + +  Q  A+L+  +  
Sbjct: 119 FNNSIPEELQE--GGNARGSGTKIRFWADPEIFESV-EYDYDTIARRLQEMAFLNKGLTI 175

Query: 244 CWSCDKEIAE-----------------------------------------------KYG 256
               ++   E                                               K  
Sbjct: 176 QLIDERVTKEQLDLEAIADAESGEKQLDETSFDDEEVDDFVEEGAVTPAPVETSGSSKKK 235

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
           + +K  +++P GL  Y++   + +S I   +     +        VE A+ W +      
Sbjct: 236 LQKKVTYHYPDGLIDYVKFLNKTKSAIHPTVVAFDVKGN---EHEVEVAMQWNQGYKEST 292

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVF 373
            ++ NTI T EGGTHE G R ALT  + +YA+  +   ++  S+  DD       ++S+ 
Sbjct: 293 HTFANTINTYEGGTHEEGFRSALTSLMNRYAKEHKLMREKDGSLTGDDCREGLAAVVSLK 352

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + +P+F GQTKTKL + + +  V+ A+ +  + +   NP EA  ++   +  S+ R+  R
Sbjct: 353 VADPQFEGQTKTKLGNSEIKGFVQRAVNEHLNDWFDANPAEAKAIVNKAVASSQARVAAR 412

Query: 434 KQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           K RE V RK+A     LPGKLADC       +EL+IVEGDSAGGSAK  R+   QA+LPL
Sbjct: 413 KARELVRRKSATDLGGLPGKLADCRTKDPKISELYIVEGDSAGGSAKGGRDSMFQAILPL 472

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIA 552
           RGKILNV  A  +K+  N ++  ++ ALG     ++    LRY K+++M DADVDG HIA
Sbjct: 473 RGKILNVEKARMDKVLKNAEVQAIITALGTGIHEEFDITKLRYNKIVLMADADVDGQHIA 532

Query: 553 SLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGK 611
           +LLLT  ++ M  L+E+ H++L +PPL+++  G  K  YA+ +  + ++LEE    G+  
Sbjct: 533 TLLLTLLFRFMPQLVEEGHVYLANPPLYKLKWGKGKPGYAYSDAERDELLEEGLNAGRKI 592

Query: 612 IE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKAD 668
            +   I R+KGLGEM AS+L ET +D + R L RV    DL   +   +  + LMG    
Sbjct: 593 NKDDGIQRYKGLGEMNASELWETTLDPSNRILRRV----DLEDAQRADELFSILMGDDVA 648

Query: 669 ERFKFIQERASFIDDVG 685
            R  FI  RA  +  + 
Sbjct: 649 ARRSFITRRAKDVRFLD 665


>gi|238750286|ref|ZP_04611788.1| DNA gyrase subunit B [Yersinia rohdei ATCC 43380]
 gi|238711519|gb|EEQ03735.1| DNA gyrase subunit B [Yersinia rohdei ATCC 43380]
          Length = 804

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 225/574 (39%), Positives = 347/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+ YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHSDNSVSVQDDGRGIPTGMHDE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L + + R+  +  Q +  G+P +PL+   +  ++ GT + F P  + F + 
Sbjct: 121 SVVNALSEKLELVIRREGKVHEQTYRMGVPQAPLKVVGET-DQTGTTVRFWPSFQTFTNN 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V       +   E       + F++ GG+K +++   +N
Sbjct: 180 TEFQYEILAKRLRELSFLNSGVSIKLRDKRNDKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  ++F   T K       VE A+ W +     I  + N I   +GGTH  G R A+
Sbjct: 233 KNPIHPKVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  IS   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 350 ETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D++  ++        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDDAMEQYQMTLALDG 563



 Score =  131 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            +  L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEGALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPEGRRMLRVMVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALRAANID 803


>gi|226950184|ref|YP_002805275.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium botulinum
           A2 str. Kyoto]
 gi|226841974|gb|ACO84640.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium botulinum
           A2 str. Kyoto]
          Length = 651

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 228/660 (34%), Positives = 355/660 (53%), Gaps = 36/660 (5%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +YD + +  LE LEPVR+RPGMYIG T  K LHH   E++DNA+DE+  GY +  EV 
Sbjct: 8   TKDYDVTKLTSLEKLEPVRVRPGMYIGSTGIKGLHHCIWEILDNAIDEISNGYGDTAEVI 67

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L+ +  +TVVDNGRGIP   HP    KS +E++ T LH GGKF+NS Y+ SGGLHGVG S
Sbjct: 68  LNKDKSVTVVDNGRGIPTGIHP-IKKKSGVEMVFTELHTGGKFNNSIYKTSGGLHGVGAS 126

Query: 161 VVNALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTRITF 209
           VVNALS+   V V + + I+ Q+F             G P++ L+      +K GTR+TF
Sbjct: 127 VVNALSEWTEVEVYQNDKIYKQRFEYALDKKLNKKMPGTPVTKLKIVGDT-DKTGTRVTF 185

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +PD ++F     F    + +  Q  A+ +  +      +++       PE +E++   GL
Sbjct: 186 KPDKEVFST-IDFKFDVIDERLQELAFQNKGIILKLIDNRK-----EEPEIKEYHSERGL 239

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
             ++    E+++ I +     + EK+    +   E    + + +   I SY N I T E 
Sbjct: 240 LDFIDYLNESKAPIHNPAVLFEGEKEINNLKMEGEICFQFTDSSTENIASYVNNIPTTEA 299

Query: 328 GTHESGLRVALTRGIKK--YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTHE+G +  +TR  K+         ++      DDL      I+ + I  P F GQTKT
Sbjct: 300 GTHETGFKTGMTRAFKEGAKKLSLIKEKDKEFDGDDLREGITAIVRIKISNPVFEGQTKT 359

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444
           KL + +A   + +     F  ++  N   +T ++   +  +  R + +K  E   +K   
Sbjct: 360 KLGNNEAYTMMNDLAYSKFLEWIEDNKEVSTLIINNALAAAARREKIKKINEAEKKKIGK 419

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               L GK+A C+   ++ TE  +VEGDSAGGSAKQAR+R  Q+++P +GKI+N      
Sbjct: 420 GLAPLAGKIAVCTLRDSNVTEFIVVEGDSAGGSAKQARDRRFQSIMPSKGKIMNTEKQKI 479

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           E +  ++++     A+G      Y+EEDL+Y+K+II++DADVDG HI +L +T+ Y+ M 
Sbjct: 480 ENVLGSEELKIFNTAIGTGVLDNYKEEDLKYDKIIILSDADVDGYHIRTLWMTYIYRYMK 539

Query: 565 DLIEQKHLFLISPPLFRI----TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
            L+   HL++  PPL+++     +G KSVY +++E  QK  ++  +       I R+KGL
Sbjct: 540 SLVANGHLYIAMPPLYKVYKKDKKGEKSVYCYNDEELQKAKKQIGR----GYLIQRYKGL 595

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GEM   QL ET ++   RTL R+ I          +  ++ LMG   + R  ++ + A F
Sbjct: 596 GEMNPEQLWETTLNPETRTLQRITIED----AAKAEKMVSLLMGDVVEPRKNYLYKYAEF 651


>gi|227495521|ref|ZP_03925837.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM
           15436]
 gi|226831068|gb|EEH63451.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM
           15436]
          Length = 704

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 235/701 (33%), Positives = 344/701 (49%), Gaps = 53/701 (7%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
              AS +Y A  + +LEGLE VR RPGMYIG TD + L H   E+IDNA+DE + G+ + 
Sbjct: 6   KNDASQSYTARHLTVLEGLEAVRKRPGMYIGSTDHRGLMHCLWEIIDNAVDEALEGHCDH 65

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V+L  +   ++ DNGRGIPV+   K  N S +E++ T LHAGGKF   +Y  SGGLHG
Sbjct: 66  IVVTLHDDYSASISDNGRGIPVDTV-KGLNLSGVEVVFTKLHAGGKFGAGSYGSSGGLHG 124

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIP--------------------LSPLEKK 196
           VG SVVNALS  L V V R        F RG P                     S LE  
Sbjct: 125 VGASVVNALSARLDVQVDRGGKTHQMSFRRGEPGIFDDSKQRTPNSPFTPFLDESKLEIV 184

Query: 197 EKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
            KV+    GTR+ F  D +IF    GF    L++  +  A+L   +      ++      
Sbjct: 185 GKVKRGVSGTRVRFWADFQIFPADEGFSWNSLVERARQTAFLVPGLTLTVIDERGEERVE 244

Query: 256 GIPEKE-------EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG---THRGTVEWA 305
            +   +       +F    G  T         +         + E++         V+ A
Sbjct: 245 EVLRFDGGVVDFVDFLAKDGPVTDTLHIKGEGTFKELVPLVEEGERRVAELERVCEVDIA 304

Query: 306 IAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK-----RAISIIS 359
           + W         S+ N + T +GGTH  G   AL + ++ + E    K     +   +  
Sbjct: 305 MRWGVGYDTIDRSFVNIVATPKGGTHVQGFEQALVKVVRAHVEKNARKFKVNAKDGRVEK 364

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL- 418
           DD++     +++V   EP+F GQTK  L +   ++ V   + D F      N  E  +  
Sbjct: 365 DDILAGLTYVVTVRFPEPQFEGQTKEILGTAPVRQVVSKVVTDFFKERFSSNKREIKQTN 424

Query: 419 ---LEWVIERSEERLRRRKQREVNRK-TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSA 474
              +E ++   + R+  R  +E++R+  A+    LP KLADC  N    +ELFIVEGDSA
Sbjct: 425 DALMEKIVGEMKARVSARIHKEISRRKNALETSSLPAKLADCRSNDVEQSELFIVEGDSA 484

Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
            G+AK AR+   QA+ P+RGKILNV    +  +  N +   ++Q +G  +   +     R
Sbjct: 485 LGTAKFARSSEYQALFPIRGKILNVQKKSTADMLANAECAAIIQVIGAGSGRTFDLSQAR 544

Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI------TQGTKS 588
           Y K+++MTDADVDGAHI +LLLT F++ M  L+E   ++   PPL RI       +  + 
Sbjct: 545 YGKIVLMTDADVDGAHIRTLLLTLFFRYMRPLVEAGRVYAAVPPLHRIEVPKQGKKPKEL 604

Query: 589 VYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINK 647
           +Y + EE   + L + K+ G+  K  I R+KGLGEM A QL ET MD   RTL R+ +  
Sbjct: 605 IYTYSEEELHQKLAQLKRQGRTYKEPIQRYKGLGEMDADQLAETTMDPAHRTLRRITLAD 664

Query: 648 DLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVGT 686
           +  +LK  ++    LMG++   R +FI   AS +D   +  
Sbjct: 665 E-AALKQAEEMFELLMGSEVVPRKEFIVAGASELDRSQIDA 704


>gi|183597169|ref|ZP_02958662.1| hypothetical protein PROSTU_00412 [Providencia stuartii ATCC 25827]
 gi|188023483|gb|EDU61523.1| hypothetical protein PROSTU_00412 [Providencia stuartii ATCC 25827]
          Length = 804

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 227/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+ YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ + I +
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGFCDDIVI 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L +T+ R   +  Q +  G P  PL    +  ++ GTR+ F P    F   
Sbjct: 121 SVVNALSEKLELTIRRDGKVHEQTYCHGEPQGPLTVVGET-DQTGTRVRFWPSLDTFKGV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++    N
Sbjct: 180 TEFEYDVLAKRLRELSFLNSGVSIRLIDKRDGKE-------DHFHYEGGIKAFVEYLSRN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   +F   TEK G     VE A+ W +     +  Y N I   +GGTH +G R ++
Sbjct: 233 KTPIHPSVFYFSTEKDGI---GVEIAMQWNDGFQENVYCYTNNIPQRDGGTHLAGFRASM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNNYMDKEGYQKKAKVSATGDDAREGLIAVISVKVPDPKFSSQTKEKLVSSEVKTAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + + F  YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 350 ETMMNERFVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D++   + L      G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDDAMDEYLISIALDG 563



 Score =  133 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L    +  +  + + R+KGLGEM   QL ET M+ + R ++RV +   +     T 
Sbjct: 719 FEEALAWLSRESRRGLSVQRYKGLGEMNPEQLWETTMNPDTRRMMRVTVKDAI----ATD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 LLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|290473098|ref|YP_003465959.1| DNA gyrase subunit B (type II topoisomerase) [Xenorhabdus bovienii
           SS-2004]
 gi|289172392|emb|CBJ79159.1| DNA gyrase, subunit B (type II topoisomerase) [Xenorhabdus bovienii
           SS-2004]
          Length = 804

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 224/582 (38%), Positives = 343/582 (58%), Gaps = 18/582 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+ YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ + I V
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCDKILV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHTDNSVSVQDDGRGIPTGIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L + + R   +  Q +  G+P +PL+       + GT + F P    F   
Sbjct: 121 SVVNALSEKLELIIRRDGKVHEQTYQHGVPQAPLKTVGDT-EQTGTTVRFWPSMDTFKLN 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       +  AE       + F++ GG+K +++    N
Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLVDKRTNAE-------DHFHYEGGIKAFVEFLSRN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   +F   TEK G     VE ++ W +     I  + N I   +GG H  G R A+
Sbjct: 233 KTPIHPNVFYFSTEKDGI---GVEISMQWNDGFQENIYCFTNNIPQRDGGAHLVGFRAAM 289

Query: 339 TRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  I+   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNSYMDKEGYNKKSKINATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 350 ETQMNEKLVEYLLENPNDAKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE+ ++++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616
             PPL+++ +G +  Y  D++  +         G        
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDDAMEAYQMSIALDGASLYTNQY 571



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ LE   K  +  + I R+KGLGEM   QL ET M+   R ++RV +   +     T 
Sbjct: 719 FEQALEWLTKESRRGLSIQRYKGLGEMNPDQLWETTMNPETRRMMRVTVKDAI----ATD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 LLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|146309671|ref|YP_001174745.1| DNA gyrase subunit B [Enterobacter sp. 638]
 gi|145316547|gb|ABP58694.1| DNA gyrase subunit B [Enterobacter sp. 638]
          Length = 804

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 229/574 (39%), Positives = 346/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++ G+  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHGDNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+     Q +S G+P +PL          GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIYREGKAHHQVYSHGVPQAPLAVTGDTEK-TGTTVRFWPSHETFSNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 VEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GG H  G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGAHLVGFRTAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPARSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHIYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ LE   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALEWLVKESRRGLYIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|330899871|gb|EGH31290.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 634

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 239/654 (36%), Positives = 364/654 (55%), Gaps = 28/654 (4%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
              ++ +Y+A +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A  
Sbjct: 2   ATPSASSYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHARS 58

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           ++V L  +  L V D+GRG+PV+ HP+    S +E+ILT LHAGGKF N  Y+ SGGLHG
Sbjct: 59  VQVILHADNSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGLHG 117

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKI 215
           VGISVVNALS ++ V V R    +   F+ G   + L     V +   GT + F PDPK 
Sbjct: 118 VGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVVGTVGKRNTGTSVYFAPDPKY 177

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     F  +RL  + ++KA L   +   +             EK E+++  GL++YLQ 
Sbjct: 178 FDTP-KFSVSRLKHVLKAKAVLCPGLLVSFEDK-------SSGEKVEWHYEDGLRSYLQD 229

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESG 333
            +     +    F G        +  V+WA+ W  E  +    SY N I T +GGTH +G
Sbjct: 230 SVTEFLRLPDGPFCGSFTGN---KEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHVNG 286

Query: 334 LRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           LR  L   ++++ E      R + +  +D+      +LS+ ++EP+F+GQTK +L S +A
Sbjct: 287 LRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREA 346

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
              V   ++D F  +L  +     +L +  I  +  RL+    ++V RK   +   LPGK
Sbjct: 347 AAFVSGVVKDAFSLWLNTHSELGLQLADLAINNAGRRLK--ASKKVERKRITQGPALPGK 404

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC+      +ELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN       ++  +Q+
Sbjct: 405 LADCAGQDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQE 464

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           + ++  A+G    +      LRY K+ I+ DAD DG HIA+LL   F Q    L++  H+
Sbjct: 465 VHNIAVAIGVDPGAADI-SQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHV 523

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKET 631
           ++  PPL+RI  G +  YA DE  +  IL+    +  +GK +++RFKGLGEM   QL+ET
Sbjct: 524 YVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRET 583

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDV 684
            MD N R L+++ ++        T + ++ L+  K A +R  +++ + +  + +
Sbjct: 584 TMDPNTRRLVQLTLDD----FAATSEMMDMLLAKKRAGDRKSWLESKGNLAEVL 633


>gi|47779376|gb|AAT38605.1| predicted topoisomerase IV subunit B [uncultured gamma
           proteobacterium eBACHOT4E07]
          Length = 630

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 235/646 (36%), Positives = 362/646 (56%), Gaps = 23/646 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A + YD+ +I +L GL+PV+ RPGMY   TD    +HL  EV+DN++DE I+G+   I++
Sbjct: 2   AKNTYDSKAIEVLSGLDPVKKRPGMY---TDTSCPNHLIQEVLDNSVDEAISGHCTNIKI 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            +  +GF+ V D+GRG+PV+ HP+    S +E+IL  LHAG KF    Y  SGGLHGVG+
Sbjct: 59  KIQKDGFINVSDDGRGMPVDIHPEH-KLSGVELILCKLHAGAKFSGDEYNFSGGLHGVGV 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGD 218
           SVVNALS+ L V + R +     +FS G   + L+    V     GT I F+P+P  F  
Sbjct: 118 SVVNALSESLQVNIKRDSKEHEMRFSNGDKKNELKVVGDVGLRNTGTSIKFKPNPDYFES 177

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
                   L  + ++KA L   +   +  +          EK ++++  GLK+YL+ + +
Sbjct: 178 D-KIKTNELKHLLKAKAVLCPGLTIDFHDE-------SKKEKIKWFYEDGLKSYLEDQSD 229

Query: 279 NRS-LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337
               ++S  I +  + K       + W  +   +N    +Y N I T +GG+H +G +  
Sbjct: 230 GIDLILSESIVSSNSSKDQEVEFVINWT-SKPYKNKLDETYVNLIPTAQGGSHLNGFKSG 288

Query: 338 LTRGIKKYAEL-TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   +K++ E  +   + + I +DD++ +A+ ++S  ++ P+FAGQTK +L S D    V
Sbjct: 289 LLDALKEFCEYRSLLPKGLKINADDVINNAIFVVSSKMQNPQFAGQTKERLDSKDHMTFV 348

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
             + +D    +  ++  E  K+ E  I  ++ R++     E  +    +   LPGKL+DC
Sbjct: 349 SGSTKDILSIWFNKHTEEGEKIAELAIISAQARVKASSTVERKKT--FKGPALPGKLSDC 406

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR RS QA++PLRGKILN     S +I  +Q+I +L
Sbjct: 407 NSEDLNKTELFLVEGDSAGGSAKQARERSFQAIMPLRGKILNTWDLESSEIIKSQEIKNL 466

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    +      LRY K+ I+ DAD DG HIA+LL   F +    L+    +F+  
Sbjct: 467 STAIGVLPGNADV-SSLRYGKICILADADSDGLHIATLLCALFLRHFKPLVNDGRIFIAM 525

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFK-KHGKGKIEISRFKGLGEMLASQLKETAMDA 635
           PPL+R+  G + +YA DE  K KI+++FK K GK KI I RFKGLGEM  SQL+ET MD 
Sbjct: 526 PPLYRVDCGKEVLYALDELQKDKIVKDFKNKKGKPKINIQRFKGLGEMNPSQLRETVMDP 585

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
             R L+R+ I+   N+       ++K     A  R ++++++ S +
Sbjct: 586 ESRQLVRLSISATDNANAMMDLLLSK---KNAPARKEWLEKKGSLV 628


>gi|170718151|ref|YP_001785179.1| DNA gyrase subunit B [Haemophilus somnus 2336]
 gi|168826280|gb|ACA31651.1| DNA gyrase, B subunit [Haemophilus somnus 2336]
          Length = 807

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 238/583 (40%), Positives = 354/583 (60%), Gaps = 20/583 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           +++ ++NY A SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY  
Sbjct: 2   SENTTENYGAGSIKVLKGLEAVRTRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCK 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V D+GRGIPV+ HP+    S  ++I+T LHAGGKFD+++Y++SGGLH
Sbjct: 62  DIIVTIHADNSVSVQDDGRGIPVDIHPE-EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVGISVVNALSD+L +T+ RQ  +  Q +  G P  PL    +     GT + F P P I
Sbjct: 121 GVGISVVNALSDKLQLTIRRQGKVHEQFYHLGDPQEPLSVIGETEK-TGTTVRFWPSPTI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   F+   L K  +  ++L+  V       +          ++ F++ GG+K +++ 
Sbjct: 180 FTNI-DFEYEILAKRLRELSFLNSGVSIKLLDKR-------NDRQDHFHYEGGIKAFVEY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             +N++ I  +IF    EK       VE A+ W +     +  + N I   +GGTH +G 
Sbjct: 232 LNKNKTPIHQKIFYFSAEKDDI---GVEVALQWNDSYQENVYCFTNNIPQRDGGTHLAGF 288

Query: 335 RVALTRGIKKY---AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           R ALTR + KY       ++K+ I+   DD     V I+SV + +P+F+ QTK KLVS +
Sbjct: 289 RGALTRILNKYVEENSNKKDKKDIATSGDDAREGLVAIVSVKVPDPKFSSQTKDKLVSSE 348

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLP 450
            +  VE+ + D    +L +NP +A  ++  +IE +  R   RK R    RK A+    LP
Sbjct: 349 VRAPVESVMSDYLQEFLEENPNDAKIIVMKIIEAARAREAARKAREMTRRKGALDIAGLP 408

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 409 GKLADCQERDPALSELYLVEGDSAGGSAKQGRNRQNQAILPLKGKILNVEKARFDKMLSS 468

Query: 511 QQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY+++ +LIE+
Sbjct: 469 QEVGTLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQLPELIER 528

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612
            H+++  PPL+++ +G +  Y  D+E  Q+        G    
Sbjct: 529 GHVYIAQPPLYKVKKGKQEQYIKDDEEMQQFELNLALEGSSLY 571



 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 8/104 (7%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           +++G +          ++ +E   K  +  + I R+KGLGEM + QL ET MD NKRT+L
Sbjct: 711 VSRGERQQSVSS---FEQAIEWLTKESRRGLIIQRYKGLGEMNSDQLFETTMDPNKRTML 767

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R +FI+  A    ++ 
Sbjct: 768 KVSIKDAV----AADQLFTTLMGDEVEPRREFIEMNALRA-NLD 806


>gi|153212956|ref|ZP_01948550.1| DNA gyrase, subunit B [Vibrio cholerae 1587]
 gi|124116182|gb|EAY35002.1| DNA gyrase, subunit B [Vibrio cholerae 1587]
          Length = 805

 Score =  525 bits (1352), Expect = e-147,   Method: Composition-based stats.
 Identities = 231/574 (40%), Positives = 349/574 (60%), Gaps = 17/574 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGY   I V
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+++ +T+ R   I +Q +  G+P +PL        + GT + F P  + F + 
Sbjct: 121 SVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDT-ERTGTTVRFWPSAQTFTNI 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V    + ++E  +K      + F + GG++ ++     N
Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEGGIQAFVTHLNRN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  ++F    E++     +VE A+ W +     I  + N I   +GGTH +G R AL
Sbjct: 233 KTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGAL 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 351 ESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  DEE   +        G
Sbjct: 531 AQPPLYKVKKGKQEQYIKDEEAMNQYQVALAMDG 564



 Score =  140 bits (352), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G +             L+   K  +  + I R+KGLGEM   QL ET MD   R ++
Sbjct: 708 IKRGERVQPISS---FAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMM 764

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +       +    LMG + + R  FI+  A  + ++ 
Sbjct: 765 QVTIEDAVG----ADELFTTLMGDQVEPRRAFIETNALKVANLD 804


>gi|262280518|ref|ZP_06058302.1| topoisomerase IV subunit B [Acinetobacter calcoaceticus RUH2202]
 gi|262258296|gb|EEY77030.1| topoisomerase IV subunit B [Acinetobacter calcoaceticus RUH2202]
          Length = 627

 Score =  525 bits (1352), Expect = e-147,   Method: Composition-based stats.
 Identities = 258/645 (40%), Positives = 373/645 (57%), Gaps = 28/645 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y A S+ +L GL+PVR RPGMY   TD    +HL  EVIDNA+DE +AG+A+ I V++ 
Sbjct: 3   QYTAQSLEVLSGLDPVRRRPGMY---TDTTRPNHLAQEVIDNAVDEALAGHADKICVTVY 59

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G L+V DNGRG+PV+ HP++  +S +EIILT LHAGGKF    Y+ SGGLHGVGISVV
Sbjct: 60  KDGSLSVEDNGRGMPVDIHPEY-GQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISVV 118

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGDKA 220
           NALS  + V V RQ  ++   F +G P++PL   E    +   GT + F P+ K F    
Sbjct: 119 NALSTRVEVEVQRQGNLYQMAFEQGEPVAPLAVLEGKAPKRATGTTVHFWPETKYFDSP- 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L    ++KA L+  +K  +             EK E+ F  GL  YL  +L++R
Sbjct: 178 KFALKALKHNLKAKAVLAAGLKIIYIDQ-------INDEKIEWQFENGLVDYLMDELQDR 230

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVAL 338
            ++ +  F    +     R   E+AI W  E  E    SY N I T +GGTH +GLR  +
Sbjct: 231 EILPNPAFVSHGQAD---RAACEFAICWNVEGGEQVQESYVNLIPTAQGGTHVNGLRSGV 287

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           T  ++++ EL     R + + ++D+      ILS+  +EP+F+GQTK +L S +A   V 
Sbjct: 288 TEALREFCELRNLLPRNLKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREASNIVL 347

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
           N  +D F  +L Q+   A +L E  I ++  RL+    ++V RK  +    LPGKLADC 
Sbjct: 348 NIAKDAFSLWLNQHAEIAMQLAEMAISKAGRRLK--AAKKVERKKIVSGPALPGKLADCV 405

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELFIVEGDSAGGSAKQAR+++ QA++P+RGKILN     S+++  +Q++ D+ 
Sbjct: 406 GQTREDTELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIA 465

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S     +LRY KV I+ DAD DG HIA+LL   F +    L+E+ HLF+  P
Sbjct: 466 IAIGVDPGSDDL-SELRYGKVCILADADSDGLHIATLLCALFVKHFPTLVEEGHLFVAMP 524

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PLFRI  G    YA D++  + IL+  K  G    +I+RFKGLGEM A QL+ET MD N 
Sbjct: 525 PLFRIDIGKDVYYALDDDELEVILKNVK--GNRNPQITRFKGLGEMNAIQLRETTMDPNT 582

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           R L++++++    +          L   ++ +R ++++++ +  D
Sbjct: 583 RRLVQLDLDDAHFTAGLLDKL---LAKKRSADRKQWLEQKGNLAD 624


>gi|21231148|ref|NP_637065.1| DNA topoisomerase IV subunit B [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66768844|ref|YP_243606.1| DNA topoisomerase IV subunit B [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21112786|gb|AAM40989.1| topoisomerase IV subunit B [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66574176|gb|AAY49586.1| topoisomerase IV subunit B [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 634

 Score =  525 bits (1352), Expect = e-147,   Method: Composition-based stats.
 Identities = 243/642 (37%), Positives = 363/642 (56%), Gaps = 25/642 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y+A+ I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AG+A  +EV+L  
Sbjct: 10  YNAADIEVLSGLDPVKRRPGMY---TDTARPNHLAQEVIDNSVDEALAGHAKQVEVTLYK 66

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G   V D+GRG+PV+ HP+      +E+ILT LHAGGKF N  Y  SGGLHGVG+SVVN
Sbjct: 67  DGSCEVSDDGRGMPVDMHPE-EKIPGVELILTRLHAGGKFSNRNYTFSGGLHGVGVSVVN 125

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222
           ALS ++ + + R+ +    +F  G   S LE    V +   GTR+ F  DPK F     F
Sbjct: 126 ALSTKVELFIKREGSEHRMEFRDGNAASKLEVVGTVGKKNTGTRLRFWADPKYFDTP-KF 184

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L  + ++KA L   +      +          E++ +YF  GL+ YL+ ++ +R L
Sbjct: 185 NVRALRHLLRAKAVLCPGLTVKLHDE-------ATGEQDSWYFEDGLRDYLKGEMADREL 237

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRG 341
           + +++F G  +K       V+WA AW  E      SY N I T + GTH +GLR  LT  
Sbjct: 238 LPADLFAGSLKKDTEI---VDWAAAWVPEGELTQESYVNLIPTAQHGTHVNGLRSGLTDA 294

Query: 342 IKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
           ++++ +      R + +  +D+      +LS+ + +P+F+GQTK +L S  A   +E A 
Sbjct: 295 LREFCDFRNLLPRGVKLAPEDVWDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAA 354

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
            D F  YL QN     K+ +  I+R+  RL+   ++++ RK   +   LPGKLADC    
Sbjct: 355 HDAFSLYLNQNVEIGEKIAQIAIDRASARLK--TEKQIVRKKVTQGPALPGKLADCISQD 412

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              TELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN     S  +  ++++ +L  A+
Sbjct: 413 LSRTELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASEEVHNLAIAI 472

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           GC          LRY KV+I+ DAD DG HIA+LL   F Q    L+   H+F+  PPLF
Sbjct: 473 GCDPGKDDI-TGLRYGKVVILADADSDGLHIATLLTALFLQHFPALVAAGHVFVAMPPLF 531

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           R+  G +  YA DEE K  +L++  +   KG+I ++RFKGLGEM   QL+E+ +  + R 
Sbjct: 532 RVDVGKQVFYALDEEEKTTLLDKIAREKMKGQISVTRFKGLGEMNPQQLRESTIHPDTRR 591

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           L+++ I+    +          L   +A +R ++++ +    
Sbjct: 592 LVQLTIDDGEQTRSLMDML---LAKKRAGDRKQWLETKGDLA 630


>gi|300854105|ref|YP_003779089.1| DNA gyrase subunit B [Clostridium ljungdahlii DSM 13528]
 gi|300434220|gb|ADK13987.1| DNA gyrase subunit B [Clostridium ljungdahlii DSM 13528]
          Length = 649

 Score =  525 bits (1352), Expect = e-147,   Method: Composition-based stats.
 Identities = 213/659 (32%), Positives = 341/659 (51%), Gaps = 36/659 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + YD +S+  LE LEPVR+RPGMYIG T  K LHH   E++DNA+DE+  G+ +   V+L
Sbjct: 7   NVYDVNSLTSLEKLEPVRVRPGMYIGSTGSKGLHHCIWELLDNAIDEISNGFGDRAYVTL 66

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G ++V DNGRGIP   HP    K+ +E++ T LH GGKF+NS Y+ SGGLHGVG +V
Sbjct: 67  NKDGSVSVQDNGRGIPTGIHP-VKKKNGVEMVFTELHTGGKFNNSVYKTSGGLHGVGAAV 125

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTRITFR 210
           VNALS  + V V ++  ++ Q+F             G P++ ++      +  GT++TF 
Sbjct: 126 VNALSTWMEVEVRQKGHVYKQRFEYAYDKSLKKNMPGTPVTAIKVIGNTDD-TGTKVTFM 184

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PD K+F     F    + +  +  A+ +  +      +              ++   GL 
Sbjct: 185 PDNKVFSTT-DFKIDVIDERLKELAFQNKGITLKLIDNTGEERVERE-----YHSERGLL 238

Query: 271 TYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGG 328
            ++    E+++ I  +    + E+K        E  + + +       SY N I T E G
Sbjct: 239 DFIDYLNESKTPIHKDPILFEGERKINDLSMYGEVCMQFTDSTTYHIASYVNNIPTTESG 298

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           THESG +  +TR  K++A+      ++      DDL      I+ + I  P F GQTKTK
Sbjct: 299 THESGFKTGMTRAFKEWAKKLNLLKEKDKEFEGDDLREGMTAIVKIKITNPIFEGQTKTK 358

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           L + +A   + +        ++  N   A+ ++   +  +  R + +K  +   +K    
Sbjct: 359 LGNTEAYTMMNDLAYTKLSEWIEDNKDIASAIINNALHAAARREKIKKINDAEKKKIGKG 418

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              L GK+A C+   +   E  +VEGDSAGGSAKQAR+R  Q ++P +GKI+N      E
Sbjct: 419 AAPLAGKVAVCTLKDSSKCEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKLE 478

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
            +  ++++     A+G      Y E DLRY+K+II++DADVDG HI SL +T+ Y+ M  
Sbjct: 479 NVLGSEELKIFNTAIGTGILENYNESDLRYDKIIILSDADVDGYHIRSLWMTYIYRYMRQ 538

Query: 566 LIEQKHLFLISPPLFRI---TQGTKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
           LI   HL++  PPL+++    +G + + YA+ +E      ++  K     + + R+KGLG
Sbjct: 539 LISNGHLYIALPPLYKVYKQNKGKEVIKYAYSDETLPDAKKKIGK----GVLVQRYKGLG 594

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           EM   QL ET ++   RTL ++ I+         +  ++ LMG     R K++ + A F
Sbjct: 595 EMNPDQLWETTLNPETRTLQQITIDD----AAKAEKMVSLLMGDVVAPRKKYMYKYAQF 649


>gi|293393724|ref|ZP_06638032.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Serratia odorifera
           DSM 4582]
 gi|291423768|gb|EFE96989.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Serratia odorifera
           DSM 4582]
          Length = 804

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 226/574 (39%), Positives = 351/574 (61%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ + I+V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDIQV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  ++I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEE-EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L + + R+  +  Q +S G P +PL+   +   + GT + F P  + F ++
Sbjct: 121 SVVNALSEKLELVIRREGKVHEQTYSHGEPQTPLKVVGET-EQTGTTVRFWPSYQTFTNQ 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFQYDILAKRLRELSFLNSGVSIRLKDKRDDKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   +F   T K       VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPTVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  IS   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNNYMDKEGYSKKSKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+ + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 350 ESLMNEKLVDYLMENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPAMSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+F+
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D++   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDDAMDQYQIAIALDG 563



 Score =  133 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ LE   K  +  + + R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALEWLVKESRRGLAVQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDSVEPRRAFIEENALKAANID 803


>gi|238754008|ref|ZP_04615367.1| DNA gyrase subunit B [Yersinia ruckeri ATCC 29473]
 gi|238707760|gb|EEQ00119.1| DNA gyrase subunit B [Yersinia ruckeri ATCC 29473]
          Length = 804

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 226/574 (39%), Positives = 347/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+ YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHSDNSVSVQDDGRGIPTGMHDE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L + + R+  +  Q +  G+P +PL+   +  ++ GT + F P  + F + 
Sbjct: 121 SVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKMVGET-DQTGTTVRFWPSFQTFTNN 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V       +   E       + F++ GG+K +++   +N
Sbjct: 180 TEFQYEILAKRLRELSFLNSGVSIKLKDKRNDKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  ++F   T K       VE A+ W +     I  + N I   +GGTH  G R A+
Sbjct: 233 KTPIHPKVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  IS   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 350 ETLMNEKLVEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+F+
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D++  ++        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDDAMEQYQMSLALDG 563



 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            +  L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEGALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPESRRMLRVMVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALRAANID 803


>gi|254225547|ref|ZP_04919156.1| DNA gyrase, subunit B [Vibrio cholerae V51]
 gi|254291124|ref|ZP_04961921.1| DNA gyrase, subunit B [Vibrio cholerae AM-19226]
 gi|125621867|gb|EAZ50192.1| DNA gyrase, subunit B [Vibrio cholerae V51]
 gi|150422969|gb|EDN14919.1| DNA gyrase, subunit B [Vibrio cholerae AM-19226]
          Length = 805

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 231/574 (40%), Positives = 349/574 (60%), Gaps = 17/574 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGY   I V
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+++ +T+ R   I +Q +  G+P +PL        + GT + F P  + F + 
Sbjct: 121 SVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDT-ERTGTTVRFWPSAQTFTNI 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V    + ++E  +K      + F + GG++ ++     N
Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEGGIQAFVTHLNRN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  ++F    E++     +VE A+ W +     I  + N I   +GGTH +G R AL
Sbjct: 233 KTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGAL 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 351 ESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  DEE   +        G
Sbjct: 531 AQPPLYKVKKGKQEQYIKDEEAMNQYQVALAMDG 564



 Score =  140 bits (352), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G +             L+   K  +  + I R+KGLGEM   QL ET MD   R ++
Sbjct: 708 IKRGERVQPISS---FAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMM 764

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +       +    LMG + + R  FI+  A  + ++ 
Sbjct: 765 QVTIEDAVG----ADELFTTLMGDQVEPRRAFIETNALKVANLD 804


>gi|153938307|ref|YP_001392050.1| DNA topoisomerase IV subunit B [Clostridium botulinum F str.
           Langeland]
 gi|170757231|ref|YP_001782378.1| DNA topoisomerase IV subunit B [Clostridium botulinum B1 str. Okra]
 gi|152934203|gb|ABS39701.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium botulinum
           F str. Langeland]
 gi|169122443|gb|ACA46279.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium botulinum
           B1 str. Okra]
          Length = 651

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 227/660 (34%), Positives = 354/660 (53%), Gaps = 36/660 (5%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +YD + +  LE LEPVR+RPGMYIG T  K LHH   E++DNA+DE+  GY +  EV 
Sbjct: 8   TKDYDVTKLTSLEKLEPVRVRPGMYIGSTGIKGLHHCIWEILDNAIDEISNGYGDTAEVI 67

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L+ +  +TVVDNGRGIP   HP    KS +E++ T LH GGKF+NS Y+ SGGLHGVG S
Sbjct: 68  LNKDKSVTVVDNGRGIPTGIHP-IKKKSGVEMVFTELHTGGKFNNSIYKTSGGLHGVGAS 126

Query: 161 VVNALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTRITF 209
           VVNALS+   V V + + I+ Q+F             G P++ L+      +K GTR+TF
Sbjct: 127 VVNALSEWTEVEVYQNDKIYKQRFEYALDKKLNKKMPGTPVTKLKIVGDT-DKTGTRVTF 185

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +PD ++F     F    + +  Q  A+ +  +      +++       PE +E++   GL
Sbjct: 186 KPDKEVFST-IDFKFDVIDERLQELAFQNKGITLKLIDNRK-----EEPEIKEYHSERGL 239

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
             ++    E+++ I +     + EK+    +   E    + + +   I SY N I T E 
Sbjct: 240 LDFIDYLNESKAPIHNPAVLFEGEKEINNLKMEGEICFQFTDSSTENIASYVNNIPTTEA 299

Query: 328 GTHESGLRVALTRGIKK--YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTHE+G +  +TR  K+         ++      DDL      I+ + I  P F GQTKT
Sbjct: 300 GTHETGFKTGMTRAFKEGAKKLSLIKEKDKEFDGDDLREGITAIVRIKISNPVFEGQTKT 359

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444
           KL + +A   + +     F  ++  N   +T ++   +  +  R + +K  E   +K   
Sbjct: 360 KLGNNEAYTMMNDLAYSKFLEWIEDNKEVSTLIINNALAAAARREKIKKINEAEKKKIGK 419

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               L GK+A C+   ++ TE  +VEGDSAGGSAKQAR+R  Q+++P +GKI+N      
Sbjct: 420 GLAPLAGKIAVCTLRDSNVTEFIVVEGDSAGGSAKQARDRRFQSIMPSKGKIMNTEKQKI 479

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           E +  ++++     A+G      Y+EEDL+Y+K+II++DADVDG HI +L +T+ Y+ M 
Sbjct: 480 ENVLGSEELKIFNTAIGTGVLDNYKEEDLKYDKIIILSDADVDGYHIRTLWMTYIYRYMK 539

Query: 565 DLIEQKHLFLISPPLFRI----TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
            L+   HL++  PPL+++     +G KSVY ++ E  +K  ++  +       I R+KGL
Sbjct: 540 SLVANGHLYIAMPPLYKVYKKDKKGEKSVYCYNNEELEKAKKQIGR----GYLIQRYKGL 595

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GEM   QL ET ++   RTL R+ I          +  ++ LMG   + R  ++ + A F
Sbjct: 596 GEMNPEQLWETTLNPETRTLQRITIED----AAKAEKMVSLLMGDVVEPRKNYLYKYAEF 651


>gi|254386996|ref|ZP_05002276.1| DNA topoisomerase IV subunit B [Streptomyces sp. Mg1]
 gi|194345821|gb|EDX26787.1| DNA topoisomerase IV subunit B [Streptomyces sp. Mg1]
          Length = 706

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 236/687 (34%), Positives = 338/687 (49%), Gaps = 53/687 (7%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY A  + +LEGLE VR RPGMYIG TD + L H   E+IDN++DE + GY + IEV L
Sbjct: 21  SNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALGGYCDHIEVIL 80

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  + V DNGRGIPV+  PK    S +E+++T LHAGGKF   +Y  SGGLHGVG SV
Sbjct: 81  HEDSSVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGASV 139

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV---------------RNKRGTR 206
           VNALS  L V V R ++  +  F RG+P    E+                   + K GTR
Sbjct: 140 VNALSARLDVEVDRNSSTHAISFRRGVPGMFTEQGPDSPFDPANGLRKVKRVAKGKTGTR 199

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + +  D +IF   A      L +  +  A+L   +      ++ I         E F F 
Sbjct: 200 VRYWADRQIFLKDARLSLEHLYQRARQTAFLVPGLTLVVRDERGIDGAGKTE--ETFRFD 257

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTVEWAIAWCE 310
           GG+  + +   +++ +      TG                    + T    V+ A+ W  
Sbjct: 258 GGISEFCEYLAQDKGVCDVLRLTGAGTFKETVPVLDDRGHMTPTEVTRELGVDIALRWGT 317

Query: 311 ENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAV 367
                  S+ N I T +GGTH SG   ++ + + +     +  R        DD M    
Sbjct: 318 GYETNVKSFVNIIATPKGGTHVSGFERSVAKTVNEVLRSAKLLRVAEDDVVKDDAMEGMT 377

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER-- 425
            +++V + EP+F GQTK  L +  A R V   +      +L     +  +    V+E+  
Sbjct: 378 AVVTVRLAEPQFEGQTKEVLGTSAATRIVAAVVAKELKAFLTSTKRDDKQQARSVMEKIV 437

Query: 426 ---SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
                    R+ +    RKTA+    LP KLADC  +    +ELFIVEGDSA G+AK AR
Sbjct: 438 AAARTRIAARQHKEAQRRKTALESSSLPAKLADCRSDDVDRSELFIVEGDSALGTAKLAR 497

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           N   QA+LP+RGKILNV  +    +  N +   ++Q +G  +   +  +  RY K++++ 
Sbjct: 498 NSEFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVIGAGSGRTFDIDAARYGKIVLLV 557

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-----TQGT-KSVYAHDEEH 596
           DADVDGAHI  LLLT F + M  ++E   +F   PPL RI      +G  K VY + +  
Sbjct: 558 DADVDGAHIRCLLLTLFQRYMRPMVEAGRVFAAVPPLHRIELVQPKKGQDKYVYTYSDNE 617

Query: 597 KQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
            ++ L EF +K+ + K  I R+KGLGEM A QL ET MD   RTL R+ I      L   
Sbjct: 618 LRQTLLEFQRKNVRYKDSIQRYKGLGEMDADQLAETTMDPRFRTLRRINIGD----LDSA 673

Query: 656 QDSINKLMGTKADERFKFIQERASFID 682
           +   + LMG +   R +FI   A+ +D
Sbjct: 674 EQVFDLLMGNEVAPRKEFITGSAATLD 700


>gi|238793146|ref|ZP_04636774.1| DNA gyrase subunit B [Yersinia intermedia ATCC 29909]
 gi|238727519|gb|EEQ19045.1| DNA gyrase subunit B [Yersinia intermedia ATCC 29909]
          Length = 804

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 225/574 (39%), Positives = 345/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+ YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHSDNSVSVQDDGRGIPTGMHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L + + R   +  Q +  G+P +PL+   +  +  GT + F P  + F + 
Sbjct: 121 SVVNALSEKLELVIRRDGKVHEQTYKMGVPQAPLKMVGET-DLTGTTVRFWPSFQTFTNN 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V       +   E       + F++ GG++ +++   +N
Sbjct: 180 IEFQYEILAKRLRELSFLNSGVSIKLKDKRNDRE-------DHFHYEGGIRAFVEYLSKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  ++F   T K       VE A+ W +     I  + N I   +GGTH  G R A+
Sbjct: 233 KNPIHPKVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  IS   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 350 ETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+F+
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D++  ++        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDDAMEQYQMTLALDG 563



 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            +  L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEDALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPTSRRMLRVMVKDAV----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALRAANID 803


>gi|294626653|ref|ZP_06705250.1| DNA topoisomerase IV subunit B [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292599073|gb|EFF43213.1| DNA topoisomerase IV subunit B [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 629

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 240/642 (37%), Positives = 360/642 (56%), Gaps = 25/642 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y+A+ I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V+L  
Sbjct: 5   YNAADIEVLSGLDPVKRRPGMY---TDTARPNHLAQEVIDNSVDEALAGHAKQVDVTLYK 61

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G   V D+GRG+PV+ HP+      +E+ILT LHAGGKF N  Y  SGGLHGVG+SVVN
Sbjct: 62  DGSCEVSDDGRGMPVDIHPE-EKIPGVELILTRLHAGGKFSNRNYTFSGGLHGVGVSVVN 120

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222
           ALS ++ + + R+ +    +F  G   S LE    V +   GTR+ F  DPK F     F
Sbjct: 121 ALSTKVELFIKREGSEHRMEFRDGNAASKLEVVGTVGKKNTGTRLRFWADPKYFDTP-KF 179

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L  + ++KA L   +      +          E++ +YF  GL+ YL+ ++    L
Sbjct: 180 NVRALRHLLRAKAVLCPGLTVKLHDE-------ATGEQDSWYFENGLRDYLKGEMAEHEL 232

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRG 341
           + +++F G  +K       V+WA AW  E      SY N I T + GTH +GLR  LT  
Sbjct: 233 LPADLFVGSLKKDTEI---VDWAAAWVPEGELVQESYVNLIPTAQHGTHVNGLRSGLTDA 289

Query: 342 IKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
           ++++ +      R + +  +D+      +LS+ + +P+F+GQTK +L S  A   +E   
Sbjct: 290 LREFCDFRNLLPRGVKLAPEDVWDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGPA 349

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
            D F  YL QN     K+ +  I+R+  RL+   ++++ RK   +   LPGKLADC    
Sbjct: 350 HDAFSLYLNQNVEIGEKIAQIAIDRASARLK--TEKQIVRKKVTQGPALPGKLADCISQD 407

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              TELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN     S  +  ++++ +L  A+
Sbjct: 408 LSRTELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASEEVHNLAIAI 467

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           GC          LRY KV+I+ DAD DG HIA+LL   F Q    L+   H+F+  PPLF
Sbjct: 468 GCDPGKDDI-TGLRYGKVVILADADSDGLHIATLLTALFLQHFPALVAAGHVFVAMPPLF 526

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           R+  G +  YA DEE K  +L++  +   KG+I ++RFKGLGEM   QL+E+ +  + R 
Sbjct: 527 RVDVGKQVFYALDEEEKTTLLDKIAREKMKGQISVTRFKGLGEMNPQQLRESTIHPDTRR 586

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           L+++ I+    +          L   +A +R ++++ +    
Sbjct: 587 LVQLTIDDGEQTRSLMDML---LAKKRASDRKQWLETKGDLA 625


>gi|302875224|ref|YP_003843857.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium cellulovorans
           743B]
 gi|307688905|ref|ZP_07631351.1| DNA topoisomerase IV subunit B [Clostridium cellulovorans 743B]
 gi|302578081|gb|ADL52093.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium cellulovorans
           743B]
          Length = 643

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 204/656 (31%), Positives = 333/656 (50%), Gaps = 32/656 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           ++YD +S+  LE LEPVR+RPGMYIG T  K LHH   E++DN++DE+  GY N + + L
Sbjct: 3   NSYDVTSLTSLEKLEPVRVRPGMYIGSTGSKGLHHCLWEILDNSIDEITNGYGNKVTIIL 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +  +T++DNGRG+P   HP    K+ +E++ T LH GGKF++S Y+ SGGLHGVG +V
Sbjct: 63  NKDKSITIMDNGRGVPTGIHP-IKKKTGVEMVYTELHTGGKFNSSNYKTSGGLHGVGAAV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV----------RNKRGTRITFRP 211
           VNALS  L V V +   IF Q+F         +                N+ GT++TF P
Sbjct: 122 VNALSKWLEVEVCQDGKIFKQRFEYAYDKKLKKVMPGTAVTNLEVIGQTNETGTKVTFLP 181

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           D ++F          + +  +  ++ +  +      D+          ++E++   GL  
Sbjct: 182 DKEVFSTI-DIKFDTVDERLKEISFQNKGIFLELIDDR-----GEEQVRKEYFSERGLLD 235

Query: 272 YLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGT 329
           ++    E ++ +  E      E++ G  +   E  + + +     I SY N I T E GT
Sbjct: 236 FIDYLNEAKTCLHKEPILISGEREIGNVKMYAEVCMQFTDSTTETIMSYVNNIPTTEAGT 295

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           HE+G +  +TR  K   +     +      +DL      I+ + +  P F GQTKTKL +
Sbjct: 296 HETGFKTGMTRAFKDCGKKFGIIKDKDFDGEDLREGLTAIVKINLTNPIFEGQTKTKLGN 355

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLR 448
            +A   + +        ++  N   A+  +   +   + +   ++      +K       
Sbjct: 356 SEATTMMNDLSYTKLCQWIEDNKELASMFINNALATAARKEKIKKINELERKKVGKGAAP 415

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           L GK+A C+      +E  +VEGDSAGGSAKQAR+R  Q ++P +GKI+N      E + 
Sbjct: 416 LAGKIAVCTSKDKAISEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKLENVL 475

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            ++++     A+G      Y E+DL+Y+K+IIM+DADVDG HI +L +T+ Y+ M  LI 
Sbjct: 476 GSEELKIFNTAIGTGILDAYDEKDLKYDKIIIMSDADVDGYHIRTLWMTYIYRYMRPLIA 535

Query: 569 QKHLFLISPPLFRI----TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
             HL++  PPL+++     +G    YA+ ++  + + +E  K       I R+KGLGEM 
Sbjct: 536 NGHLYMAQPPLYKVYKESKKGEIHKYAYSDDELESVKKEIGKGAL----IQRYKGLGEMN 591

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
             QL +T ++   RTL ++ I          +  ++ LMG   + R  ++ + A F
Sbjct: 592 PEQLWQTTLNPETRTLYQITIED----AAKAEKMVSLLMGEVVEPRKNYMYKYAEF 643


>gi|21242463|ref|NP_642045.1| DNA topoisomerase IV subunit B [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|325924935|ref|ZP_08186364.1| DNA topoisomerase IV subunit B [Xanthomonas perforans 91-118]
 gi|21107909|gb|AAM36581.1| topoisomerase IV subunit B [Xanthomonas axonopodis pv. citri str.
           306]
 gi|325544658|gb|EGD16012.1| DNA topoisomerase IV subunit B [Xanthomonas perforans 91-118]
          Length = 629

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 242/642 (37%), Positives = 361/642 (56%), Gaps = 25/642 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y+A+ I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AG+A  +EV+L  
Sbjct: 5   YNAADIEVLSGLDPVKRRPGMY---TDTARPNHLAQEVIDNSVDEALAGHAKQVEVTLYK 61

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G   V D+GRG+PV+ HP+      +E+ILT LHAGGKF N  Y  SGGLHGVG+SVVN
Sbjct: 62  DGSCEVSDDGRGMPVDIHPE-EKIPGVELILTRLHAGGKFSNRNYTFSGGLHGVGVSVVN 120

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222
           ALS ++ + + R+ +    +F  G   S LE    V +   GTR+ F  DPK F     F
Sbjct: 121 ALSTKVELFIKREGSEHRMEFRDGNAASKLEVVGTVGKKNTGTRLRFWADPKYFDTP-KF 179

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L  + ++KA L   +      +          E++ +YF  GL+ YL+ ++    L
Sbjct: 180 NVRALRHLLRAKAVLCPGLTVKLHDE-------ATGEQDSWYFENGLRDYLKGEMAEHEL 232

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRG 341
           + +++F G  +K       V+WA AW  E      SY N I T + GTH +GLR  LT  
Sbjct: 233 LPADLFVGSLKKDTEI---VDWAAAWVPEGELVQESYVNLIPTAQHGTHVNGLRSGLTDA 289

Query: 342 IKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
           ++++ +      R + +  +D+      +LS+ + +P+F+GQTK +L S  A   +E A 
Sbjct: 290 LREFCDFRNLLPRGVKLAPEDVWDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAA 349

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
            D F  YL QN     K+ +  I+R+  RL+   ++++ RK   +   LPGKLADC    
Sbjct: 350 HDAFSLYLNQNVEIGEKIAQIAIDRASARLK--TEKQIVRKKVTQGPALPGKLADCISQD 407

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              TELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN     S  +  ++++ +L  A+
Sbjct: 408 LSRTELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASEEVHNLAIAI 467

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           GC          LRY KV+I+ DAD DG HIA+LL   F Q    L+   H+F+  PPLF
Sbjct: 468 GCDPGKDDI-TGLRYGKVVILADADSDGLHIATLLTALFLQHFPALVAAGHVFVAMPPLF 526

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           R+  G +  YA DEE K  +L++  +   KG+I ++RFKGLGEM   QL+E+ +  + R 
Sbjct: 527 RVDVGKQVFYALDEEEKTTLLDKIAREKMKGQISVTRFKGLGEMNPQQLRESTIHPDTRR 586

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           L+++ I+    +          L   +A +R ++++ +    
Sbjct: 587 LVQLTIDDGEQTRSLMDML---LAKKRASDRKQWLETKGDLA 625


>gi|290511692|ref|ZP_06551060.1| DNA gyrase, B subunit [Klebsiella sp. 1_1_55]
 gi|289775482|gb|EFD83482.1| DNA gyrase, B subunit [Klebsiella sp. 1_1_55]
          Length = 806

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 230/574 (40%), Positives = 350/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHSDNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R N +  Q +  G+P +PL    +  +K GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQRDNKVHKQIYVHGVPQAPLAVTGET-DKTGTMVRFWPSHETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQIAIALDG 563



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD + R +LRV +   +       
Sbjct: 721 FEQALDWLVKESRRGLSIQRYKGLGEMNPDQLWETTMDPDSRRMLRVTVKDAI----AAD 776

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 777 QLFTTLMGDAVEPRRAFIEENALKAANID 805


>gi|229530199|ref|ZP_04419588.1| DNA gyrase subunit B [Vibrio cholerae 12129(1)]
 gi|229332332|gb|EEN97819.1| DNA gyrase subunit B [Vibrio cholerae 12129(1)]
          Length = 805

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 232/574 (40%), Positives = 349/574 (60%), Gaps = 17/574 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGY   I V
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+++ +T+ R   I SQ +  G+P +PL        + GT + F P  + F + 
Sbjct: 121 SVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGDT-ERTGTTVRFWPSAQTFTNI 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V    + ++E  +K      + F + GG++ ++     N
Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEGGIQAFVTHLNRN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  ++F    E++     +VE A+ W +     I  + N I   +GGTH +G R AL
Sbjct: 233 KTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGAL 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 351 ESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  DEE   +        G
Sbjct: 531 AQPPLYKVKKGKQEQYIKDEEAMNQYQVALAMDG 564



 Score =  140 bits (352), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G +             L+   K  +  + I R+KGLGEM   QL ET MD   R ++
Sbjct: 708 IKRGERVQPISS---FAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMM 764

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +       +    LMG + + R  FI+  A  + ++ 
Sbjct: 765 QVTIEDAVG----ADELFTTLMGDQVEPRRAFIETNALKVANLD 804


>gi|259910292|ref|YP_002650648.1| DNA gyrase subunit B [Erwinia pyrifoliae Ep1/96]
 gi|224965914|emb|CAX57447.1| DNA gyrase subunit B [Erwinia pyrifoliae Ep1/96]
 gi|310765871|gb|ADP10821.1| DNA gyrase subunit B [Erwinia sp. Ejp617]
          Length = 802

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 222/566 (39%), Positives = 349/566 (61%), Gaps = 18/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ + I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDILV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEE-EGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L +T+ R+  +  Q +  G+P + L    +  +  GTR+ F P  + F + 
Sbjct: 121 SVVNALSEKLELTIRREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++        + + +++ GG+K +++   +N
Sbjct: 180 VEFEYEILAKRLRELSFLNSGVSIKLEDKRD-------GKNDHYHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   +F   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNVFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL+++P +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLSEYLLEHPGDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +E+++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+  +Q++  
Sbjct: 410 CQERDPALSEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  D+E   + 
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQY 555



 Score =  138 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ ++   K  +  + + R+KGLGEM   QL ET MD + R +LRV I   +       
Sbjct: 717 FEQAIDWLGKESRRGLSVQRYKGLGEMNPEQLWETTMDPDSRRMLRVTIKDAV----AAD 772

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 773 QLFTTLMGDAVEPRRAFIEENALRAANID 801


>gi|28198449|ref|NP_778763.1| DNA topoisomerase IV subunit B [Xylella fastidiosa Temecula1]
 gi|182681122|ref|YP_001829282.1| DNA topoisomerase IV subunit B [Xylella fastidiosa M23]
 gi|28056533|gb|AAO28412.1| topoisomerase IV subunit B [Xylella fastidiosa Temecula1]
 gi|182631232|gb|ACB92008.1| DNA topoisomerase IV, B subunit [Xylella fastidiosa M23]
          Length = 629

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 242/646 (37%), Positives = 364/646 (56%), Gaps = 26/646 (4%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y+A+ I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AGYAN IEV+L  
Sbjct: 5   YNAADIEVLTGLDPVKRRPGMY---TDTTRPNHLAQEVIDNSVDEALAGYANRIEVTLYK 61

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G   V DNGRG+PV+ HP+      +E+ILT LHAGGKF N  Y  SGGLHGVG+SVVN
Sbjct: 62  DGSCEVADNGRGMPVDIHPE-EKIPGVELILTRLHAGGKFSNRNYTFSGGLHGVGVSVVN 120

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222
           ALS ++ + + R+ +    +F  G  +S L+    V +   GTR+ F PD K F     F
Sbjct: 121 ALSSKVDLFIKREGSEHHMEFREGFAVSKLKVLGTVSKKNTGTRLRFWPDSKYFDTP-KF 179

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L  + ++KA L   +      +          E   ++F  GL+ YL+ ++    L
Sbjct: 180 NVRVLRHLLRAKAVLCPGLTVELLEE-------ATGEINTWHFKDGLRDYLKGEMTESEL 232

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRG 341
           + +E+F G  +K       V+WA+AW  E      SY N I T + GTH +GLR  LT  
Sbjct: 233 LPAELFIGCLKKDTE---VVDWAVAWVPEGELTQESYVNLIPTPQHGTHVNGLRSGLTDA 289

Query: 342 IKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
           ++++ +      R I +  +D+      +LS+ + +P+F+GQTK +L S  A   +E+ +
Sbjct: 290 LREFCDFRNLLPRGIKLAPEDVWDRVTFVLSLKMSDPQFSGQTKERLSSRQAAGFIESTV 349

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
            D F  +L QN      + +  IER+  RL+   +++V RK       LPGKLADC    
Sbjct: 350 HDAFSLWLNQNVDIGEHIAQIAIERASARLK--TEKQVTRKKITHGPALPGKLADCISLD 407

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              TELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN     S  +  + ++ +L  A+
Sbjct: 408 LSRTELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASDEVHNLAIAI 467

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           GC          LRY K++I+ DAD DG HIA+LL   F +    L+   H+F+  PPLF
Sbjct: 468 GCDPGKDNL-SGLRYGKIVILADADSDGLHIATLLTALFLKHFPGLVAAGHVFVAMPPLF 526

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           R+  G +  YA D+E K  +LE+ ++   KG+I ++RFKGLGEM   QL+E+ +  + R 
Sbjct: 527 RVDVGKQVFYALDDEEKTILLEKIQREKIKGQISVTRFKGLGEMNPQQLRESTIHPDTRR 586

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           L+++ ++ +  +          L   +A +R ++++ + +    + 
Sbjct: 587 LVQLTMDDNTQTCSLMDML---LAKKRASDRKQWLETKGNLAS-LD 628


>gi|15640047|ref|NP_062599.1| DNA gyrase subunit B [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121727887|ref|ZP_01680946.1| DNA gyrase, subunit B [Vibrio cholerae V52]
 gi|147673680|ref|YP_001218397.1| DNA gyrase subunit B [Vibrio cholerae O395]
 gi|153819850|ref|ZP_01972517.1| DNA gyrase, subunit B [Vibrio cholerae NCTC 8457]
 gi|153821919|ref|ZP_01974586.1| DNA gyrase, subunit B [Vibrio cholerae B33]
 gi|227080252|ref|YP_002808803.1| DNA gyrase, subunit B [Vibrio cholerae M66-2]
 gi|229508300|ref|ZP_04397804.1| DNA gyrase subunit B [Vibrio cholerae BX 330286]
 gi|229508861|ref|ZP_04398352.1| DNA gyrase subunit B [Vibrio cholerae B33]
 gi|229517132|ref|ZP_04406578.1| DNA gyrase subunit B [Vibrio cholerae RC9]
 gi|229606574|ref|YP_002877222.1| DNA gyrase subunit B [Vibrio cholerae MJ-1236]
 gi|254851580|ref|ZP_05240930.1| DNA gyrase subunit B [Vibrio cholerae MO10]
 gi|255746803|ref|ZP_05420749.1| DNA gyrase subunit B [Vibrio cholera CIRS 101]
 gi|262155882|ref|ZP_06029004.1| DNA gyrase subunit B [Vibrio cholerae INDRE 91/1]
 gi|262167103|ref|ZP_06034818.1| DNA gyrase subunit B [Vibrio cholerae RC27]
 gi|298501200|ref|ZP_07010999.1| DNA gyrase, B subunit [Vibrio cholerae MAK 757]
 gi|11386840|sp|Q9KVX3|GYRB_VIBCH RecName: Full=DNA gyrase subunit B
 gi|9654406|gb|AAF93193.1| DNA gyrase, subunit B [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121629831|gb|EAX62246.1| DNA gyrase, subunit B [Vibrio cholerae V52]
 gi|126509611|gb|EAZ72205.1| DNA gyrase, subunit B [Vibrio cholerae NCTC 8457]
 gi|126520539|gb|EAZ77762.1| DNA gyrase, subunit B [Vibrio cholerae B33]
 gi|146315563|gb|ABQ20102.1| DNA gyrase, subunit B [Vibrio cholerae O395]
 gi|227008140|gb|ACP04352.1| DNA gyrase, subunit B [Vibrio cholerae M66-2]
 gi|227011982|gb|ACP08192.1| DNA gyrase, subunit B [Vibrio cholerae O395]
 gi|229346195|gb|EEO11167.1| DNA gyrase subunit B [Vibrio cholerae RC9]
 gi|229354136|gb|EEO19068.1| DNA gyrase subunit B [Vibrio cholerae B33]
 gi|229354573|gb|EEO19495.1| DNA gyrase subunit B [Vibrio cholerae BX 330286]
 gi|229369229|gb|ACQ59652.1| DNA gyrase subunit B [Vibrio cholerae MJ-1236]
 gi|254847285|gb|EET25699.1| DNA gyrase subunit B [Vibrio cholerae MO10]
 gi|255735560|gb|EET90959.1| DNA gyrase subunit B [Vibrio cholera CIRS 101]
 gi|262024489|gb|EEY43175.1| DNA gyrase subunit B [Vibrio cholerae RC27]
 gi|262030334|gb|EEY48976.1| DNA gyrase subunit B [Vibrio cholerae INDRE 91/1]
 gi|297540072|gb|EFH76134.1| DNA gyrase, B subunit [Vibrio cholerae MAK 757]
          Length = 805

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 232/574 (40%), Positives = 350/574 (60%), Gaps = 17/574 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGY   I V
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+++ +T+ R   I SQ +  G+P +PL    +   + GT + F P  + F + 
Sbjct: 121 SVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGET-ERTGTTVRFWPSAQTFTNI 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V    + ++E  +K      + F + GG++ ++     N
Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEGGIQAFVTHLNRN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  ++F    E++     +VE A+ W +     I  + N I   +GGTH +G R AL
Sbjct: 233 KTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGAL 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 351 ESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  DEE   +        G
Sbjct: 531 AQPPLYKVKKGKQEQYIKDEEAMNQYQVALAMDG 564



 Score =  140 bits (352), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G +             L+   K  +  + I R+KGLGEM   QL ET MD   R ++
Sbjct: 708 IKRGERVQPISS---FAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMM 764

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +       +    LMG + + R  FI+  A  + ++ 
Sbjct: 765 QVTIEDAVG----ADELFTTLMGDQVEPRRAFIETNALKVANLD 804


>gi|113461844|ref|YP_719913.1| DNA gyrase subunit B [Haemophilus somnus 129PT]
 gi|112823887|gb|ABI25976.1| DNA gyrase subunit B [Haemophilus somnus 129PT]
          Length = 807

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 238/583 (40%), Positives = 354/583 (60%), Gaps = 20/583 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           +++ ++NY A SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY  
Sbjct: 2   SENTTENYGAGSIKVLKGLEAVRTRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCK 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V D+GRGIPV+ HP+    S  ++I+T LHAGGKFD+++Y++SGGLH
Sbjct: 62  DIIVTIHADNSVSVQDDGRGIPVDIHPE-EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVGISVVNALSD+L +T+ RQ  +  Q +  G P  PL    +     GT + F P P I
Sbjct: 121 GVGISVVNALSDKLQLTIRRQGKVHEQFYHLGDPQEPLSVIGETEK-TGTTVRFWPSPTI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   F+   L K  +  ++L+  V       +          ++ F++ GG+K +++ 
Sbjct: 180 FTNI-DFEYEILAKRLRELSFLNSGVSIKLLDKR-------NDRQDHFHYEGGIKAFVEY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             +N++ I  +IF    EK       VE A+ W +     +  + N I   +GGTH +G 
Sbjct: 232 LNKNKTPIHQKIFYFSAEKDDI---GVEVALQWNDSYQENVYCFTNNIPQRDGGTHLAGF 288

Query: 335 RVALTRGIKKY---AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           R ALTR + KY       ++K+ I+   DD     V I+SV + +P+F+ QTK KLVS +
Sbjct: 289 RGALTRVLNKYVEENSNKKDKKDIATSGDDAREGLVAIVSVKVPDPKFSSQTKDKLVSSE 348

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLP 450
            +  VE+ + D    +L +NP +A  ++  +IE +  R   RK R    RK A+    LP
Sbjct: 349 VRAPVESVMSDYLQEFLEENPNDAKIIVMKIIEAARAREAARKAREMTRRKGALDIAGLP 408

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 409 GKLADCQERDPALSELYLVEGDSAGGSAKQGRNRQNQAILPLKGKILNVEKARFDKMLSS 468

Query: 511 QQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY+++ +LIE+
Sbjct: 469 QEVGTLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQLPELIER 528

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612
            H+++  PPL+++ +G +  Y  D+E  Q+        G    
Sbjct: 529 GHVYIAQPPLYKVKKGKQEQYIKDDEEMQQFELNLALEGSSLY 571



 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 8/104 (7%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           +++G +          ++ +E   K  +  + I R+KGLGEM + QL ET MD NKRT+L
Sbjct: 711 VSRGERQQSVSS---FEQAIEWLTKESRRGLIIQRYKGLGEMNSDQLFETTMDPNKRTML 767

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R +FI+  A    ++ 
Sbjct: 768 KVSIKDAV----AADQLFTTLMGDEVEPRREFIEMNALRA-NLD 806


>gi|229520187|ref|ZP_04409614.1| DNA gyrase subunit B [Vibrio cholerae TM 11079-80]
 gi|229342781|gb|EEO07772.1| DNA gyrase subunit B [Vibrio cholerae TM 11079-80]
          Length = 805

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 231/574 (40%), Positives = 349/574 (60%), Gaps = 17/574 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGY   I V
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+++ +T+ R   I +Q +  G+P +PL        + GT + F P  + F + 
Sbjct: 121 SVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDT-ERTGTTVRFWPSAQTFTNI 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V    + ++E  +K      + F + GG++ ++     N
Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEGGIQAFVTHLNRN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  ++F    E++     +VE A+ W +     I  + N I   +GGTH +G R AL
Sbjct: 233 KTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGAL 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 351 ESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  DEE   +        G
Sbjct: 531 AQPPLYKVKKGKQEQYIKDEEAMNQYQVALAMDG 564



 Score =  140 bits (352), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G +             L+   K  +  + I R+KGLGEM   QL ET MD   R ++
Sbjct: 708 IKRGERVQPISS---FAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMM 764

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +       +    LMG + + R  FI+  A  + ++ 
Sbjct: 765 QVTIEDAVG----ADELFTTLMGDQVEPRRAFIETNALKVANLD 804


>gi|153826434|ref|ZP_01979101.1| DNA gyrase, subunit B [Vibrio cholerae MZO-2]
 gi|229515946|ref|ZP_04405403.1| DNA gyrase subunit B [Vibrio cholerae TMA 21]
 gi|149739820|gb|EDM54015.1| DNA gyrase, subunit B [Vibrio cholerae MZO-2]
 gi|229347046|gb|EEO12008.1| DNA gyrase subunit B [Vibrio cholerae TMA 21]
          Length = 805

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 231/574 (40%), Positives = 348/574 (60%), Gaps = 17/574 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGY   I V
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+++ +T+ R   I +Q +  G+P +PL        + GT + F P  + F + 
Sbjct: 121 SVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDT-ERTGTTVRFWPSAQTFTNI 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V      ++E  +K      + F + GG++ ++     N
Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLIDEREEDKK------DHFMYEGGIQAFVTHLNRN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  ++F    E++     +VE A+ W +     I  + N I   +GGTH +G R AL
Sbjct: 233 KTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGAL 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 351 ESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  DEE   +        G
Sbjct: 531 AQPPLYKVKKGKQEQYIKDEEAMNQYQVALAMDG 564



 Score =  140 bits (352), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G +             L+   K  +  + I R+KGLGEM   QL ET MD   R ++
Sbjct: 708 IKRGERVQPISS---FAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMM 764

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +       +    LMG + + R  FI+  A  + ++ 
Sbjct: 765 QVTIEDAVG----ADELFTTLMGDQVEPRRAFIETNALKVANLD 804


>gi|325924529|ref|ZP_08186048.1| DNA topoisomerase IV subunit B [Xanthomonas gardneri ATCC 19865]
 gi|325545024|gb|EGD16359.1| DNA topoisomerase IV subunit B [Xanthomonas gardneri ATCC 19865]
          Length = 629

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 239/642 (37%), Positives = 362/642 (56%), Gaps = 25/642 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y+A+ I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AG+A  +EV+L  
Sbjct: 5   YNAADIEVLSGLDPVKRRPGMY---TDTARPNHLAQEVIDNSVDEALAGHAKQVEVTLFK 61

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G   V D+GRG+PV+ HP+      +E+ILT LHAGGKF+N  Y  SGGLHGVG+SVVN
Sbjct: 62  DGSCEVSDDGRGMPVDMHPE-EKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVSVVN 120

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222
           ALS ++ + + R+ +    +F  GI  S LE    V +   GTR+ F  DPK F     F
Sbjct: 121 ALSTKVELFIKREGSEHRMEFRDGIAASKLEVVGTVGKKNTGTRLRFWADPKYFDTP-KF 179

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L  + ++KA L   +                 E++ ++F  GL+ YL+ ++    +
Sbjct: 180 NVRALRHLLRAKAVLCPGLTVKLHD-------GATGEQDSWHFENGLRDYLKGEMAEHEM 232

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRG 341
           + +++F G  +K       V+WA AW  E      SY N I T + GTH +GLR  LT  
Sbjct: 233 LPADLFAGSLKKDTEI---VDWAAAWVPEGELVQESYVNLIPTAQHGTHVNGLRSGLTDA 289

Query: 342 IKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
           ++++ +      R + +  +D++     +LS+ + +P+F+GQTK +L S  A   +E A 
Sbjct: 290 LREFCDFRNLLPRGVKLAPEDVLDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAA 349

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
            D F  YL QN     K+ +  I+R+  RL+   ++++ RK   +   LPGKLADC    
Sbjct: 350 HDAFSLYLNQNVEIGEKIAQIAIDRASARLK--TEKQIVRKKVTQGPALPGKLADCISQD 407

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              TELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN     S  +  ++++ +L  A+
Sbjct: 408 LSRTELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASEEVHNLAIAI 467

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           GC          LRY KV I+ DAD DG HIA+LL   F +    L+   H+F+  PPLF
Sbjct: 468 GCDPGKDDI-SGLRYGKVTILADADSDGLHIATLLTALFLRHFPALVAAGHVFVAMPPLF 526

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           R+  G +  YA DEE K  +L++  +   KG++ ++RFKGLGEM   QL+E+ +  + R 
Sbjct: 527 RVDVGKQVFYALDEEEKTTLLDKIAREKIKGQVSVTRFKGLGEMNPQQLRESTIHPDTRR 586

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           L+++ I+    +          L   +A +R ++++ +    
Sbjct: 587 LVQLTIDDGEQTRSLMDML---LAKKRAGDRKQWLESKGDLA 625


>gi|294663738|ref|ZP_06729289.1| DNA topoisomerase IV subunit B [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292606396|gb|EFF49590.1| DNA topoisomerase IV subunit B [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 629

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 241/642 (37%), Positives = 361/642 (56%), Gaps = 25/642 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y+A+ I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V+L  
Sbjct: 5   YNAADIEVLSGLDPVKRRPGMY---TDTARPNHLAQEVIDNSVDEALAGHAKQVDVTLYK 61

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G   V D+GRG+PV+ HP+      +E+ILT LHAGGKF N  Y  SGGLHGVG+SVVN
Sbjct: 62  DGSCEVSDDGRGMPVDIHPE-EKIPGVELILTRLHAGGKFSNRNYTFSGGLHGVGVSVVN 120

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222
           ALS ++ + + R+ +    +F  G   S LE    V +   GTR+ F  DPK F     F
Sbjct: 121 ALSTKVELFIKREGSEHRMEFRDGNAASKLEVVGTVGKKNTGTRLRFWADPKYFDTP-KF 179

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L  + ++KA L   +      +          E++ +YF  GL+ YL+ ++    L
Sbjct: 180 NVRALRHLLRAKAVLCPGLTVKLHDE-------ATGEQDSWYFENGLRDYLKGEMAEHEL 232

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRG 341
           + +++F G  +K       V+WA AW  E      SY N I T + GTH +GLR  LT  
Sbjct: 233 LPADLFVGSLKKDTEI---VDWAAAWVPEGELVQESYVNLIPTAQHGTHVNGLRSGLTDA 289

Query: 342 IKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
           ++++ +      R + +  +D+      +LS+ + +P+F+GQTK +L S  A   +E A 
Sbjct: 290 LREFCDFRNLLPRGVKLAPEDVWDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAA 349

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
            D F  YL QN     K+ +  I+R+  RL+   ++++ RK   +   LPGKLADC    
Sbjct: 350 HDAFSLYLNQNVEIGEKIAQIAIDRASARLK--TEKQIVRKKVTQGPALPGKLADCISQD 407

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              TELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN     S  +  ++++ +L  A+
Sbjct: 408 LSRTELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASEEVHNLAVAI 467

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           GC          LRY KV+I+ DAD DG HIA+LL   F Q    L+   H+F+  PPLF
Sbjct: 468 GCDPGKDDI-TGLRYGKVVILADADSDGLHIATLLTALFLQHFPALVAAGHVFVAMPPLF 526

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           R+  G +  YA DEE K  +L++  +   KG+I ++RFKGLGEM   QL+E+ +  + R 
Sbjct: 527 RVDVGKQVFYALDEEEKTTLLDKIAREKIKGQISVTRFKGLGEMNPQQLRESTIHPDTRR 586

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           L+++ I+    +          L   +A +R ++++ +    
Sbjct: 587 LVQLTIDDGEQTRSLMDML---LAKKRASDRKQWLETKGDLA 625


>gi|123444339|ref|YP_001008304.1| DNA gyrase subunit B [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|122091300|emb|CAL14186.1| DNA gyrase subunit B [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 804

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 226/574 (39%), Positives = 347/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+ YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHSDNSVSVQDDGRGIPTGMHDE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L + + R+  +  Q +  G+P +PL+   +  ++ GT + F P  + F + 
Sbjct: 121 SVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DQTGTTVRFWPSFQTFTNN 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V       +   E       + F++ GG+K +++   +N
Sbjct: 180 TEFQYEILAKRLRELSFLNSGVSIKLKDKRNDKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  ++F   T K       VE A+ W +     I  + N I   +GGTH  G R A+
Sbjct: 233 KNPIHPKVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  IS   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 350 ETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+F+
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D++  ++        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDDAMEQYQMTLALDG 563



 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            +  L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEDALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPTSRRMLRVMVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALRAANID 803


>gi|121587244|ref|ZP_01677017.1| DNA gyrase, subunit B [Vibrio cholerae 2740-80]
 gi|121548490|gb|EAX58546.1| DNA gyrase, subunit B [Vibrio cholerae 2740-80]
          Length = 805

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 232/574 (40%), Positives = 350/574 (60%), Gaps = 17/574 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGY   I V
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP E HP+  N S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDNSVSVSDDGRGIPTEMHPE-ENVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+++ +T+ R   I +Q +  G+P +PL        + GT + F P  + F + 
Sbjct: 121 SVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDT-ERTGTTVRFWPSAQTFTNI 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V    + ++E  +K      + F + GG++ ++     N
Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEGGIQAFVTHLNRN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  ++F    E++     +VE A+ W +     I  + N I   +GGTH +G R AL
Sbjct: 233 KTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGAL 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 351 ESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  DEE   +        G
Sbjct: 531 AQPPLYKVKKGKQEQYIKDEEAMNQYQVALAMDG 564



 Score =  140 bits (352), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G +             L+   K  +  + I R+KGLGEM   QL ET MD   R ++
Sbjct: 708 IKRGERVQPISS---FAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMM 764

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +       +    LMG + + R  FI+  A  + ++ 
Sbjct: 765 QVTIEDAVG----ADELFTTLMGDQVEPRRAFIETNALKVANLD 804


>gi|134094035|ref|YP_001099110.1| DNA topoisomerase IV subunit B [Herminiimonas arsenicoxydans]
 gi|133737938|emb|CAL60983.1| DNA topoisomerase 4 subunit B (Topoisomerase IV subunit B)
           [Herminiimonas arsenicoxydans]
          Length = 661

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 254/674 (37%), Positives = 366/674 (54%), Gaps = 42/674 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            A + +S +Y  SSIR+L+GLEPV+ RPGMY   T  +   H+  EVIDNA DE + GY 
Sbjct: 1   MATKKSSADYSESSIRVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYC 57

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST---YEIS 151
             I V+L+ +G ++V D+GRGIPV  HP+     T+EI+ T LHAGGKFD S+   Y  S
Sbjct: 58  KHIVVTLNTDGSVSVEDDGRGIPVGLHPE-EKIPTVEIVFTRLHAGGKFDKSSGGAYAFS 116

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN--KRGTRITF 209
           GGLHGVG+SV NALS  L +TV R++ + +  FS G  + PL+ +   R+  + GTR+T 
Sbjct: 117 GGLHGVGVSVTNALSTRLEITVWRESGVHTLTFSGGDVIEPLKSRAIARDEKRSGTRVTA 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PDPK F        A L ++ +SKA L   VK      K         E + + +  GL
Sbjct: 177 WPDPKYFDSSV-IPQAELQRLLRSKAVLLPGVKVTLVHAKS-------GETQTWQYDQGL 228

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGT-------VEWAIAWCEENP-EITSYCNT 321
           + YL   L   S   + I   + E+                W +AW E+      SY N 
Sbjct: 229 RGYLTESLAQASNAETVIPLFEGEQYANADTEGFAEGEGAAWVVAWTEDGAVVRESYVNL 288

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFA 380
           I T  GGTHESGLR  L   +K + E+     + + ++ +D+      +LS  + +P+F 
Sbjct: 289 IPTSNGGTHESGLREGLFGAVKSFVEMHSLLPKGVKLLPEDVFARVSFVLSAKVLDPQFQ 348

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQ K +L S DA R V    R   + +L Q+     KL E VI++++ RLR  ++ E  +
Sbjct: 349 GQIKERLNSRDAVRLVATYTRPALELWLNQHVDYGKKLAELVIKQAQSRLRSAQKVEKKK 408

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
            + +  L  PGKL DC  +     E+F+VEGDSAGGSAK  R++  QA+LPLRGK+LN  
Sbjct: 409 SSGVAVL--PGKLTDCESSDTSRNEIFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNSW 466

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLT 557
               +++  N +I D+  A+G     +    D   LRY ++ I++DADVDG+HI  LLLT
Sbjct: 467 ETERDRLFANNEIHDIAVAIGIDPHGKNDTVDFSSLRYGRICILSDADVDGSHIQVLLLT 526

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--K 609
            F++    LIE+ H+ +  PPL+R+    +G K    +YA D+     I ++ +K G  +
Sbjct: 527 LFFKHFPQLIERGHICIARPPLYRVDAPARGKKPIQKIYALDDGELAAIEDKLRKDGVKE 586

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KAD 668
               ISRFKGLGEM A QL ET M+ + R LL V + +      +     N LMG  +A 
Sbjct: 587 SAWAISRFKGLGEMNAEQLWETTMNPDTRRLLPVALGEFDLDFSEA--RFNMLMGKGEAA 644

Query: 669 ERFKFIQERASFID 682
            R  +I+E  +  +
Sbjct: 645 ARRTWIEEHGNEAE 658


>gi|330886496|gb|EGH20237.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. mori str.
           301020]
          Length = 634

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 245/656 (37%), Positives = 369/656 (56%), Gaps = 29/656 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            AN SAS +Y+A +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A
Sbjct: 1   MANPSAS-SYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHA 56

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             ++V L  +  L V D+GRG+PV+ HP+    S +E+ILT LHAGGKF N  Y+ SGGL
Sbjct: 57  RSVQVILHADNSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213
           HGVGISVVNALS ++ V V R    +   F+ G   + L     V +   GT + F PDP
Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVIGTVGKRNTGTSVYFAPDP 175

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     F  +RL  + ++KA L   +   +             EK E+++  GL++YL
Sbjct: 176 KYFDTP-KFSVSRLKHVLKAKAVLCPGLLVSFEDK-------STNEKVEWHYEDGLRSYL 227

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHE 331
           Q  + +   +  E F G        +  V+WA+ W  E  +    SY N I T +GGTH 
Sbjct: 228 QDSVSDFLRLPDEPFCGSFAGN---KEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHV 284

Query: 332 SGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           +GLR  L   ++++ E      R + +  +D+      +LS+ ++EP+F+GQTK +L S 
Sbjct: 285 NGLRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSR 344

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
           +A   V   ++D F  +L  +     +L +  I  +  RL+    ++V RK   +   LP
Sbjct: 345 EAAAFVSGVVKDAFSLWLNTHSELGLQLADLAINNAGRRLK--ASKKVERKRITQGPALP 402

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC+      +ELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN       ++  +
Sbjct: 403 GKLADCAGQDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLAS 462

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           Q++ ++  A+G    +      LRY K+ I+ DAD DG HIA+LL   F Q    L++  
Sbjct: 463 QEVHNIAVAIGVDPGAADI-SQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAG 521

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLK 629
           H+++  PPL+RI  G +  YA DE  +  IL+    +  +GK +++RFKGLGEM   QL+
Sbjct: 522 HVYVAMPPLYRIDLGKEIYYALDESERDGILDRLVAEKKRGKPQVTRFKGLGEMKPPQLR 581

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDV 684
           ET MD N R L+++ ++        T + ++ L+  K A +R  +++ + +  + +
Sbjct: 582 ETTMDPNTRRLVQLTLDD----FAATSEMMDMLLAKKRAGDRKSWLESKGNLAEVL 633


>gi|322807083|emb|CBZ04657.1| topoisomerase IV subunit B [Clostridium botulinum H04402 065]
          Length = 651

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 227/660 (34%), Positives = 354/660 (53%), Gaps = 36/660 (5%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +YD + +  LE LEPVR+RPGMYIG T  K LHH   E++DNA+DE+  GY +  EV 
Sbjct: 8   TKDYDVTKLTSLEKLEPVRVRPGMYIGSTGLKGLHHCIWEILDNAIDEISNGYGDTAEVI 67

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L+ +  +TVVDNGRGIP   HP    KS +E++ T LH GGKF+NS Y+ SGGLHGVG S
Sbjct: 68  LNKDKSVTVVDNGRGIPTGIHP-IKKKSGVEMVFTELHTGGKFNNSIYKTSGGLHGVGAS 126

Query: 161 VVNALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTRITF 209
           VVNALS+   V V + + I+ Q+F             G P++ L+      +K GTR+TF
Sbjct: 127 VVNALSEWTEVEVYQNDKIYKQRFEYALDKKLNKKMPGTPVTKLKIVGDT-DKTGTRVTF 185

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +PD ++F     F    + +  Q  A+ +  +      +++       PE +E++   GL
Sbjct: 186 KPDKEVFST-IDFKFDVIDERLQELAFQNKGITLKLIDNRK-----EEPEIKEYHSERGL 239

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
             ++    E+++ I +     + EK+    +   E    + + +   I SY N I T E 
Sbjct: 240 LDFIDYLNESKAPIHNPAVLFEGEKEINNLKMEGEICFQFTDSSTENIASYVNNIPTTEA 299

Query: 328 GTHESGLRVALTRGIKK--YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTHE+G +  +TR  K+         ++      DDL      I+ + I  P F GQTKT
Sbjct: 300 GTHETGFKTGMTRAFKEGAKKLSLIKEKDKEFDGDDLREGITAIVRIKISNPVFEGQTKT 359

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444
           KL + +A   + +     F  ++  N   +T ++   +  +  R + +K  E   +K   
Sbjct: 360 KLGNNEAYTMMNDLAYSKFLEWIEDNKEVSTLIINNALAAAARREKIKKINEAEKKKIGK 419

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               L GK+A C+   ++ TE  +VEGDSAGGSAKQAR+R  Q+++P +GKI+N      
Sbjct: 420 GLAPLAGKIAVCTLRDSNVTEFIVVEGDSAGGSAKQARDRRFQSIMPSKGKIMNTEKQKI 479

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           E +  ++++     A+G      Y+EEDL+Y+K+II++DADVDG HI +L +T+ Y+ M 
Sbjct: 480 ENVLGSEELKIFNTAIGTGVLDNYKEEDLKYDKIIILSDADVDGYHIRTLWMTYIYRYMK 539

Query: 565 DLIEQKHLFLISPPLFRI----TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
            L+   HL++  PPL+++     +G KSVY ++ E  +K  ++  +       I R+KGL
Sbjct: 540 SLVANGHLYIAMPPLYKVYKKDKKGEKSVYCYNNEELEKAKKQIGR----GYLIQRYKGL 595

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GEM   QL ET ++   RTL R+ I          +  ++ LMG   + R  ++ + A F
Sbjct: 596 GEMNPEQLWETTLNPETRTLQRITIED----AAKAEKMVSLLMGDVVEPRKNYLYKYAEF 651


>gi|261346739|ref|ZP_05974383.1| DNA gyrase, B subunit [Providencia rustigianii DSM 4541]
 gi|282565139|gb|EFB70674.1| DNA gyrase, B subunit [Providencia rustigianii DSM 4541]
          Length = 804

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 227/574 (39%), Positives = 345/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+ YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ + I +
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGFCDDIVI 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L + + R   +  Q +  G P  PL    +  ++ GTR+ F P    F   
Sbjct: 121 SVVNALSEKLELVIRRDGKVHEQIYKHGEPQGPLTVVGET-DQTGTRVRFWPSMDTFKGI 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++    N
Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLIDKRDGKE-------DHFHYDGGIKAFVEYLSRN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   +F   TEK G     VE A+ W +     +  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPSVFYFSTEKDGI---GVEVAMQWNDGFQENVYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y E      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNNYMEKEGYQKKTKVSATGDDAREGLIAVISVKVPDPKFSSQTKEKLVSSEVKTAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 350 ETLMNEKLVEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHIYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E     L      G
Sbjct: 530 AQPPLYKVKRGKQEQYIKDDEAMDDYLISIALDG 563



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   +  +  + + R+KGLGEM   QL ET M+ + R ++RV +   +     T 
Sbjct: 719 FEQALDWLSRESRRGLAVQRYKGLGEMNPEQLWETTMNPDTRRMMRVTVKDAI----ATD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|37524036|ref|NP_927380.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36783459|emb|CAE12299.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 804

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 230/579 (39%), Positives = 346/579 (59%), Gaps = 18/579 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+ YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ + + V
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSEVIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L + + R   +  Q +  G+P SPL+   +   + GTR+ F P    F D 
Sbjct: 121 SVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGET-EQTGTRVRFWPSMDTFRDN 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V       +   E       + F++ GG+K +++   +N
Sbjct: 180 TEFQHDILAKRLRELSFLNSGVSIRLIDKRTNIE-------DHFHYEGGIKAFVEFLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   +F   TEK G     VE ++ W +     I  + N I   +GGTH  G R A+
Sbjct: 233 KTPIHPNVFYFSTEKDGI---GVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 289

Query: 339 TRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     V ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 350 ETLMNEKLVEYLLENPNDAKTVVSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+F+
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613
             PPL+++ +G +  Y  D+E   +        G     
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDEYQLSIALDGASLYT 568



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L    K  +  + I R+KGLGEM   QL ET M+   R ++RV +   +     T 
Sbjct: 719 FEQALNWLTKESRRGLSIQRYKGLGEMNPEQLWETTMNPETRRMMRVTVKDAI----ATD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|153802491|ref|ZP_01957077.1| DNA gyrase, subunit B [Vibrio cholerae MZO-3]
 gi|124121961|gb|EAY40704.1| DNA gyrase, subunit B [Vibrio cholerae MZO-3]
          Length = 805

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 231/574 (40%), Positives = 348/574 (60%), Gaps = 17/574 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGY   I V
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+++ +T+ R   I +Q +  G+P +PL        + GT + F P  + F + 
Sbjct: 121 SVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDT-ERTGTTVRFWPSAQTFTNI 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V      ++E  +K      + F + GG++ ++     N
Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLIDEREEDKK------DHFMYEGGIQAFVTHLNRN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  ++F    E++     +VE A+ W +     I  + N I   +GGTH +G R AL
Sbjct: 233 KTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGAL 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 351 ESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  DEE   +        G
Sbjct: 531 AQPPLYKVKKGKQEQYIKDEEAMNQYQVALAMDG 564



 Score =  140 bits (352), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G +             L+   K  +  + I R+KGLGEM   QL ET MD   R ++
Sbjct: 708 IKRGERVQPISS---FAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMM 764

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +       +    LMG + + R  FI+  A  + ++ 
Sbjct: 765 QVTIEDAVG----ADELFTTLMGDQVEPRRAFIETNALKVANLD 804


>gi|297625214|ref|YP_003686977.1| DNA gyrase subunit B [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296920979|emb|CBL55516.1| DNA gyrase subunit B [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 680

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 258/674 (38%), Positives = 370/674 (54%), Gaps = 19/674 (2%)

Query: 22  KLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEV 81
           + +K  +        + S    Y A  I++LEGLE VR RPGMYIG T E+ LHHL  E+
Sbjct: 15  EDEKRMDALTLTDTEDDSVDGEYGADEIQVLEGLEAVRKRPGMYIGSTGERGLHHLVREI 74

Query: 82  IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141
           +DN++DE +AGYA+ IEV+L   G   VVDNGRGIPV  HP   + STL ++LT LHAGG
Sbjct: 75  VDNSVDEALAGYADSIEVTLLNGGGCRVVDNGRGIPVAEHP-AEHISTLTLVLTVLHAGG 133

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KF    Y++SGGLHGVG SVVNALS      V R    + Q F+ G P++P+E+ E+   
Sbjct: 134 KFGGGGYKVSGGLHGVGSSVVNALSSRFDADVYRDGYHWHQSFTLGDPVAPVERLEET-E 192

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEK 260
           + GT ITF P   IF     F    L    +  A+L+  ++   + ++ +  ++ G    
Sbjct: 193 RTGTTITFYPSADIFET-TDFSYETLATGFREIAFLNKGLRIAITDERTDHVDEDGKQLH 251

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
           + F F  GL  Y+     NR  ++  I       +      VE A+ W       + ++ 
Sbjct: 252 DVFKFDNGLVDYVTFLNGNRETMTPVIDVEAHAPEVGM--GVEVAMQWNTSYVTSLHTFA 309

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           NTI T EGGTHE G R ALT  I K+ E      KR   + +DD+      I+SV +  P
Sbjct: 310 NTINTREGGTHEEGFRAALTTTINKWGENWGLIKKREDRVSNDDIREGLTAIVSVKLVNP 369

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F GQTKT+L + +A+  V+ A+ +    ++ QNP +   ++      +  R+  RK R+
Sbjct: 370 QFEGQTKTRLGNTEARGFVQRAVNERLGDWMEQNPGDGKLIVRKAQAAASARIAARKARD 429

Query: 438 V--NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           +  NRK  +    LPGKLADCS N     E+FIVEGDSAGGSAK  RN   QA+LPLRGK
Sbjct: 430 MARNRKGLLGSGGLPGKLADCSSNNPEECEIFIVEGDSAGGSAKGGRNPRIQAILPLRGK 489

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLL 555
           ILNV  A  ++   ++ I  ++ ALG     ++    LRY K+++M DADVDGAHI +LL
Sbjct: 490 ILNVEKARIDRALQSETIEAIISALGTGVHEEFDINKLRYHKIVLMADADVDGAHIRTLL 549

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVY-AHDEEHKQKILEEFKKHGKGKIE- 613
           LT  ++ M +LI+  +++L  PPLFR+         A+++  +  + ++  + GK     
Sbjct: 550 LTLLFRFMPELIDGGYVYLAQPPLFRLRWTNAPHELAYNDGERDSLRDKGLEAGKKLPSV 609

Query: 614 --ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERF 671
             I R+KGLGEM A  L  T MD + R LL+V ++           + + LMG   +ER 
Sbjct: 610 NPIQRYKGLGEMDAQDLWTTTMDPDNRILLQVNLDD----AARADQTFSILMGEDVEERR 665

Query: 672 KFIQERASFIDDVG 685
           +FIQ  A  +  + 
Sbjct: 666 RFIQRNAKDVRFLD 679


>gi|283480416|emb|CAY76332.1| DNA gyrase subunit B [Erwinia pyrifoliae DSM 12163]
          Length = 803

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 222/566 (39%), Positives = 349/566 (61%), Gaps = 18/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ + I V
Sbjct: 3   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDILV 62

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 63  TIHADNSVSVQDDGRGIPTGIHEE-EGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 121

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L +T+ R+  +  Q +  G+P + L    +  +  GTR+ F P  + F + 
Sbjct: 122 SVVNALSEKLELTIRREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNV 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++        + + +++ GG+K +++   +N
Sbjct: 181 VEFEYEILAKRLRELSFLNSGVSIKLEDKRD-------GKNDHYHYEGGIKAFVEYLNKN 233

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   +F   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 234 KTPIHPNVFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL+++P +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 351 EQQMNELLSEYLLEHPGDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +E+++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+  +Q++  
Sbjct: 411 CQERDPALSEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  D+E   + 
Sbjct: 531 AQPPLYKVKKGKQEQYIKDDEAMDQY 556



 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ ++   K  +  + + R+KGLGEM   QL ET MD + R +LRV I   +       
Sbjct: 718 FEQAIDWLGKESRRGLSVQRYKGLGEMNPEQLWETTMDPDSRRMLRVTIKDAV----AAD 773

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 774 QLFTTLMGDAVEPRRAFIEENALRAANID 802


>gi|292490133|ref|YP_003533028.1| DNA gyrase subunit B [Erwinia amylovora CFBP1430]
 gi|292901137|ref|YP_003540506.1| DNA gyrase subunit B [Erwinia amylovora ATCC 49946]
 gi|291200985|emb|CBJ48124.1| DNA gyrase subunit B [Erwinia amylovora ATCC 49946]
 gi|291555575|emb|CBA24167.1| DNA gyrase subunit B [Erwinia amylovora CFBP1430]
 gi|312174326|emb|CBX82579.1| DNA gyrase subunit B [Erwinia amylovora ATCC BAA-2158]
          Length = 802

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 222/566 (39%), Positives = 349/566 (61%), Gaps = 18/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ + I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDILV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEE-EGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L +T+ R+  +  Q +  G+P + L    +  +  GTR+ F P  + F + 
Sbjct: 121 SVVNALSEKLELTIRREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++        + + +++ GG+K +++   +N
Sbjct: 180 VEFEYEILAKRLRELSFLNSGVSIKLEDKRD-------GKNDHYHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   +F   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNVFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL+++P +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLSEYLLEHPGDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +E+++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+  +Q++  
Sbjct: 410 CQERDPALSEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  D+E   + 
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQY 555



 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ ++   K  +  + + R+KGLGEM   QL ET MD + R +LRV I   +       
Sbjct: 717 FEQAIDWLGKESRRGLSVQRYKGLGEMNPEQLWETTMDPDSRRMLRVTIKDAV----AAD 772

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 773 QLFTTLMGDAVEPRRAFIEENALRAANID 801


>gi|257454361|ref|ZP_05619624.1| DNA topoisomerase IV, B subunit [Enhydrobacter aerosaccus SK60]
 gi|257448264|gb|EEV23244.1| DNA topoisomerase IV, B subunit [Enhydrobacter aerosaccus SK60]
          Length = 629

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 248/646 (38%), Positives = 376/646 (58%), Gaps = 26/646 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY ++S+ +LEGL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A  I V L
Sbjct: 2   SNYTSTSLEVLEGLDPVRRRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHAKNITVIL 58

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G L+V D+GRG+P + HP+F  +S +E+ILT LHAGGKF    Y++SGGLHGVGISV
Sbjct: 59  HTDGSLSVEDDGRGMPTDIHPEF-KQSGIELILTRLHAGGKFSTDNYQVSGGLHGVGISV 117

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS ++ VTV R   +F+ +F  G  ++PL       + KRGT + F  + + + D  
Sbjct: 118 VNALSHKVDVTVWRNGEVFTMQFIDGNAVAPLAVAPSSNKKKRGTLVRFWVN-ETYFDSP 176

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F+  +L    ++KA LS  +   +  + +  +       + + F  GL  YL  +L   
Sbjct: 177 KFNIKQLKHHLKAKAVLSAGLTITFINEIDGDK-------DVWQFTDGLSQYLTEQLVEE 229

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +  + F    + K   R  + +AI W  E       SY N I T +GGTH +GLR  +
Sbjct: 230 ITLPEQPFVFNYDAKKGERAGLSFAICWLSEGGTPVQESYVNLIPTAQGGTHVNGLRTGI 289

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           T  +K++ EL     R + +  +D+      ILS+   EP+F+GQTK +L S +A   V+
Sbjct: 290 TDALKEFCELHNLLPRNVKLAPEDVWDGVNYILSLKFSEPQFSGQTKERLSSREAAGVVQ 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
              +D F  +L QN   A ++ E  I ++ +RL+    ++V RK   +   LPGKLADC 
Sbjct: 350 AFAKDGFSLWLNQNSEIAKQIAELAINKAGKRLK--SAKKVERKKITQGPALPGKLADCR 407

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
            N+  G ELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN      + +  +++I ++ 
Sbjct: 408 GNLRDGAELFLVEGDSAGGSAKQARDRHFQAIMPLRGKILNTWEVSPDTVLASEEIHNIA 467

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S     +LRY+K+ I+ DAD DG HIA+LL   F +    +++  HL++  P
Sbjct: 468 IAIGVDPDSDDL-SELRYDKICILADADSDGLHIATLLCALFVKHFKAVVDAGHLYVAMP 526

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G +  YA D +  ++IL++  K+   K +I+RFKGLGEM A QL+ET M+ + 
Sbjct: 527 PLYRIDIGKEVEYALDNDELEQILKKVAKN--KKPQITRFKGLGEMSAEQLRETTMNPDT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++    DL+    T   ++ L+  K A +R  +++++    +
Sbjct: 585 RRLVQL----DLDDPTATDSVMDMLLAKKRASDRKTWLEQKGDLAE 626


>gi|152965502|ref|YP_001361286.1| DNA topoisomerase IV subunit B [Kineococcus radiotolerans SRS30216]
 gi|151360019|gb|ABS03022.1| DNA topoisomerase (ATP-hydrolyzing) [Kineococcus radiotolerans
           SRS30216]
          Length = 693

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 234/696 (33%), Positives = 340/696 (48%), Gaps = 57/696 (8%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
              + +  D Y A+++ +LEGLE VR RPGMYIG TD + L H   E+IDN++DE + G+
Sbjct: 2   TPPSPTPDDKYTAANLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALGGH 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
            + I+V L  +G + V D+GRGIPV+   K    S +E++ T LHAGGKF   +Y  SGG
Sbjct: 62  CSRIDVVLRRDGSVEVRDDGRGIPVDA-EKRTGLSGVEVVFTHLHAGGKFGGGSYSASGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-------------- 199
           LHGVG SVVNALS  L V V R    ++  F RG P     +                  
Sbjct: 121 LHGVGASVVNALSARLDVEVDRGGKTYATSFRRGTPGRYAGEGPDADFTPETGLAVVGRA 180

Query: 200 -RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
            R   GTR+ +  D +IF  +A F    L+   +  ++L   ++     ++      G  
Sbjct: 181 KRGVTGTRVRYWADRQIFLKEAAFSYEDLVARARQTSFLVPGLRIVLRDERS-----GEA 235

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTV 302
            +E F   GG+  Y      +  + S     G+                  ++ T    V
Sbjct: 236 TEEVFQHDGGIGEYADFLTPDAPVTSVWRLQGEDTFTETVPVLDDSGHMSPQEVTRDCVV 295

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK----RAISI 357
           + A+ W     P + S+ N I T +GG+H SG    L   +KK  +    +    R   +
Sbjct: 296 DIALRWGTGYDPTVRSFVNIISTPKGGSHLSGFEQGLHAAVKKQVDAQARRLKVGRDEKL 355

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD----AQRTVENALRDPFDHYLVQNPI 413
             DD++     +++V + EP+F GQTK  L +       ++ VEN L   F      +  
Sbjct: 356 EKDDVLAGLTAVVTVRLAEPQFEGQTKEVLGTAAVRAIVRKVVENELGAVFASPKRDDKQ 415

Query: 414 EATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
           EAT +L+ V+   + R+  R  +E   RK A+    LP KL DC  +    TELF+VEGD
Sbjct: 416 EATAVLDKVVAEMKSRISARLHKETQRRKNALESSSLPAKLKDCRSDDVDNTELFLVEGD 475

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           SA G+A  ARN   QA+LPLRGKILNV  A    +  N +   ++Q +G  +   +    
Sbjct: 476 SALGTAMGARNSEYQALLPLRGKILNVQKASVTDMLKNAECASIIQVVGGGSGRSFDLSA 535

Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI------TQGT 586
           +RY K+++MTDADVDGAHI +LLLT F++ M  LIE   +F   PPL R+       +G 
Sbjct: 536 VRYGKIVLMTDADVDGAHIRTLLLTLFFRYMRPLIEAGRVFAAVPPLHRLEVTQPGKKGK 595

Query: 587 KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646
           + VY + +   +++  +  + G+   E  R+KGLGEM   QL ET M+   RTL RV + 
Sbjct: 596 EVVYTYSDAELRRVTADLNRRGRSYREPQRYKGLGEMDEDQLAETTMERQHRTLRRVTV- 654

Query: 647 KDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
                          LMG     R  FI   A  +D
Sbjct: 655 ---ADGAVADRVFELLMGNDVAPRKDFIIAGAEKLD 687


>gi|157368284|ref|YP_001476273.1| DNA gyrase subunit B [Serratia proteamaculans 568]
 gi|157320048|gb|ABV39145.1| DNA gyrase, B subunit [Serratia proteamaculans 568]
          Length = 804

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 226/574 (39%), Positives = 349/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ + I+V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDIQV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  ++I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEE-EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L + + R+  +  Q ++ G P +PL+   +  ++ GT + F P  + F + 
Sbjct: 121 SVVNALSEKLELVIRREGKVHEQTYAMGEPQAPLKVVGET-DQTGTTVRFWPSYETFTNN 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       +   E       + F++ GG+K +++   +N
Sbjct: 180 VEFEYDILAKRLRELSFLNSGVSIRLKDKRTDKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   +F   T K       VE A+ W +     I  + N I   +GGTH  G R A+
Sbjct: 233 KTPIHPNVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  IS   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 350 ETLMNEKLVDYLMENPGDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+F+
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIAMDG 563



 Score =  133 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
           E  ++ LE   K  +  + + R+KGLGEM   QL ET MD   R +LRV +   +     
Sbjct: 717 ESFEQALEWLVKESRRGLAVQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----A 772

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
                  LMG   + R  FI+E A    ++ 
Sbjct: 773 ADQLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|71274921|ref|ZP_00651209.1| Gram negative topoisomerase IV, subunit B [Xylella fastidiosa
           Dixon]
 gi|170729813|ref|YP_001775246.1| DNA topoisomerase IV subunit B [Xylella fastidiosa M12]
 gi|71164653|gb|EAO14367.1| Gram negative topoisomerase IV, subunit B [Xylella fastidiosa
           Dixon]
 gi|167964606|gb|ACA11616.1| DNA topoisomerase (ATP-hydrolyzing) [Xylella fastidiosa M12]
          Length = 629

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 241/646 (37%), Positives = 364/646 (56%), Gaps = 26/646 (4%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y+A+ I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AGYAN IEV+L  
Sbjct: 5   YNAADIEVLTGLDPVKRRPGMY---TDTTRPNHLAQEVIDNSVDEALAGYANRIEVTLYK 61

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G   V DNGRG+PV+ HP+      +E+ILT LHAGGKF N  Y  SGGLHGVG+SVVN
Sbjct: 62  DGSCEVADNGRGMPVDIHPE-EKIPGVELILTRLHAGGKFSNRNYTFSGGLHGVGVSVVN 120

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222
           ALS ++ + + R+ +    +F  G  +S L+    V +   GTR+ F PD K F     F
Sbjct: 121 ALSSKVDLFIKREGSEHHMEFREGFAVSKLKVLGTVSKKNTGTRLRFWPDSKYFDTP-KF 179

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L  + ++KA L   +      +          E   ++F  GL+ YL+ ++    L
Sbjct: 180 NVRVLRHLLRAKAVLCPGLTVELLEE-------ATGEINTWHFKDGLRDYLKGEMTESEL 232

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRG 341
           + +E+F G  +K       V+WA+AW  E      SY N I T + GTH +GLR  LT  
Sbjct: 233 LPAELFIGCLKKDTE---VVDWAVAWVPEGELTQESYVNLIPTPQHGTHVNGLRSGLTDA 289

Query: 342 IKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
           ++++ +      R I +  +D+      +LS+ + +P+F+GQTK +L S  A   +E+ +
Sbjct: 290 LREFCDFRNLLPRGIKLAPEDVWDRVTFVLSLKMSDPQFSGQTKERLSSRQAAGFIESTV 349

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
            D F  +L QN      + +  IER+  RL+   +++V RK       LPGKLADC    
Sbjct: 350 HDAFSLWLNQNVDIGEHIAQIAIERASARLK--TEKQVTRKKITHGPALPGKLADCISLD 407

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              TELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN     S  +  + ++ +L  A+
Sbjct: 408 LSRTELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASDEVHNLAIAI 467

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           GC          LRY K++I+ DAD DG HIA+LL   F +    L+   H+F+  PPLF
Sbjct: 468 GCDPGKDNL-SGLRYGKIVILADADSDGLHIATLLTALFLKHFPGLVAAGHVFVAMPPLF 526

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           R+  G +  YA D+E K  +LE+ ++   KG++ ++RFKGLGEM   QL+E+ +  + R 
Sbjct: 527 RVDVGKQVFYALDDEEKTILLEKIQREKIKGQVSVTRFKGLGEMNPQQLRESTIHPDTRR 586

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           L+++ ++ +  +          L   +A +R ++++ + +    + 
Sbjct: 587 LVQLTMDDNTQTCSLMDML---LAKKRASDRKQWLETKGNLAS-LD 628


>gi|296270359|ref|YP_003652991.1| DNA topoisomerase [Thermobispora bispora DSM 43833]
 gi|296093146|gb|ADG89098.1| DNA topoisomerase (ATP-hydrolyzing) [Thermobispora bispora DSM
           43833]
          Length = 690

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 230/700 (32%), Positives = 334/700 (47%), Gaps = 58/700 (8%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
                A   Y A  + +L+GLE VR RPGMYIG TD + L H   E++DNA+DE ++GY 
Sbjct: 1   MTAVRAEAGYTARHLSVLDGLEAVRKRPGMYIGSTDSRGLMHCLWEIVDNAVDEALSGYC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             IEV L  +G + V DNGRGIPV+  P+      +E++ T LHAGGKF   +Y  +GGL
Sbjct: 61  TRIEVELYPDGSIEVRDNGRGIPVDIEPR-TGLPGVELVYTRLHAGGKFGGGSYGATGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-------------- 200
           HGVG SVVNALS  L V V R   +    F RG+P     +    +              
Sbjct: 120 HGVGASVVNALSSRLDVEVDRDGRVHQISFRRGVPGIFDGEGPNAKFRKKSGLRDGGPTE 179

Query: 201 -NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
               GTR+ + PD KIF   A      +    +  A+L   +       +          
Sbjct: 180 PGVTGTRVRWWPDRKIFLPDAEISLDEVRVRLRQTAFLVPGLTLMLRDGR-----GEEVV 234

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTVE 303
           +E F F GG+  + +    +  +       G                    +      V+
Sbjct: 235 EETFAFQGGIAEFTEFLAPDEPVCDVLRLQGTGHFHETVPVLDEQGHMVLTEVERELEVD 294

Query: 304 WAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISD 360
            A+ W +     + S+ N I T +GGTH +G   AL R + +    T+  R      I +
Sbjct: 295 VALRWGKGYDTVVRSFVNVIATPKGGTHVAGFERALVRTVNEQLRETRLLRNGDEPVIKE 354

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D++     +++V + EP+F GQTK  L +  A R V + +                + L 
Sbjct: 355 DVLEGLTAVVAVRMPEPQFEGQTKEILGTAAASRIVAHVVSRELKALFATPKRGQKQQLR 414

Query: 421 WVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            V+E+           R ++    RK+A+    LP KL DC  +    +ELFIVEGDSA 
Sbjct: 415 AVLEKIVAAAKARIAAREQRDNQRRKSALENSALPAKLVDCRSDDVERSELFIVEGDSAL 474

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           G+AK AR+   QA+LP+RGKILNV  A    +  N +   ++Q +G  +   +     RY
Sbjct: 475 GTAKLARDSEFQALLPIRGKILNVQKASVSDMLKNAECAAIIQVVGAGSGRTFDLSAARY 534

Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT-----QGT-KSV 589
            K+I+M DADVDGAHI  LLLT F++ M  +IE   +F   PPL RI      +G  K +
Sbjct: 535 GKIILMADADVDGAHIRCLLLTLFHRYMRPMIEAGRVFAAVPPLHRIEILNPGKGQDKYL 594

Query: 590 YAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648
           Y + +    ++L + ++ GK  K  + R+KGLGEM A QL ET MD   R L RV I   
Sbjct: 595 YTYSDAELHRVLADLERRGKRWKEPVQRYKGLGEMDADQLAETTMDPRHRVLRRVRIED- 653

Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVGT 686
               ++ +   N LMG++   R +FI + A+ ID  ++  
Sbjct: 654 ---AEEAERIFNLLMGSEVGPRREFIVQNAAAIDRENIDA 690


>gi|332163518|ref|YP_004300095.1| DNA gyrase subunit B [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|318608022|emb|CBY29520.1| DNA gyrase subunit B [Yersinia enterocolitica subsp. palearctica
           Y11]
 gi|325667748|gb|ADZ44392.1| DNA gyrase subunit B [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|330861742|emb|CBX71916.1| DNA gyrase subunit B [Yersinia enterocolitica W22703]
          Length = 804

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 226/574 (39%), Positives = 347/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+ YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHSDNSVSVQDDGRGIPTGMHDE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L + + R+  +  Q +  G+P +PL+   +  ++ GT + F P  + F + 
Sbjct: 121 SVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DQTGTTVRFWPSFQTFTNN 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V       +   E       + F++ GG+K +++   +N
Sbjct: 180 TEFQYEILAKRLRELSFLNSGVSIKLKDKRNDKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  ++F   T K       VE A+ W +     I  + N I   +GGTH  G R A+
Sbjct: 233 KNPIHPKVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  IS   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 350 ETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+F+
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D++  ++        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDDAMEQYQMTLALDG 563



 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            +  L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEDALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPTSRRMLRVMVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALRAANID 803


>gi|15804293|ref|NP_290332.1| DNA gyrase subunit B [Escherichia coli O157:H7 EDL933]
 gi|25292809|pir||D86054 hypothetical protein gyrB [imported] - Escherichia coli  (strain
           O157:H7, substrain EDL933)
 gi|12518538|gb|AAG58896.1|AE005601_2 DNA gyrase subunit B, type II topoisomerase, ATPase activity
           [Escherichia coli O157:H7 str. EDL933]
          Length = 804

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 226/574 (39%), Positives = 346/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  + + +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIXDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEG SAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGXSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|15837887|ref|NP_298575.1| DNA topoisomerase IV subunit B [Xylella fastidiosa 9a5c]
 gi|9106275|gb|AAF84095.1|AE003962_5 topoisomerase IV subunit B [Xylella fastidiosa 9a5c]
          Length = 629

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 243/646 (37%), Positives = 364/646 (56%), Gaps = 26/646 (4%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y+A+ I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AGYAN IEV+L  
Sbjct: 5   YNAADIEVLTGLDPVKRRPGMY---TDTTRPNHLAQEVIDNSVDEALAGYANRIEVTLYK 61

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G   V DNGRG+PV+ HP+      +E+ILT LHAGGKF N  Y  SGGLHGVG+SVVN
Sbjct: 62  DGSCEVADNGRGMPVDIHPE-EKIPGVELILTRLHAGGKFSNRNYTFSGGLHGVGVSVVN 120

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222
           ALS ++ + + R+ +    +F  G  +S L+    V +   GTR+ F PD K F     F
Sbjct: 121 ALSSKVDLFIKREGSEHHMEFREGFAVSKLKVLGTVSKKNTGTRLRFWPDSKYFDTP-KF 179

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L  + ++KA L   +      +          E   ++F  GL+ YL+ ++    L
Sbjct: 180 NVRVLRHLLRAKAVLCPGLTVELLEE-------ATGEINTWHFKDGLRDYLKGEMTESEL 232

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRG 341
           + +E+F G  +K       V+WA+AW  E      SY N I T + GTH +GLR  LT  
Sbjct: 233 LPAELFIGCLKKDTE---VVDWAVAWVPEGELTQESYVNLIPTPQHGTHVNGLRSGLTDA 289

Query: 342 IKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
           ++++ +      R I +  +D+      +LS+ + +P+F+GQTK +L S  A   +E  +
Sbjct: 290 LREFCDFRNLLPRGIKLAPEDVWDRVTFVLSLKMSDPQFSGQTKERLSSRQAAGFIEGTV 349

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
            D F  +L QN     ++ +  IER+  RL+   +++V RK       LPGKLADC    
Sbjct: 350 HDAFSLWLNQNVDIGEQIAQIAIERASARLK--TEKQVTRKKITHGPALPGKLADCISLD 407

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              TELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN     S  +  + ++ +L  A+
Sbjct: 408 LSRTELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGNVLASDEVHNLAIAI 467

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           GC          LRY KV+I+ DAD DG HIA+LL   F +    L+   H+F+  PPLF
Sbjct: 468 GCDPGKDNL-SGLRYGKVVILADADSDGLHIATLLTALFLKHFPALVAAGHVFVAMPPLF 526

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           R+  G +  YA D+E K  +LE+ K+   KG++ ++RFKGLGEM   QL+E+ +  + R 
Sbjct: 527 RVDVGKQVFYALDDEEKTMLLEKIKREKIKGQVSVTRFKGLGEMNPQQLRESTIHPDTRR 586

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           L+++ ++ +  +          L   +A +R ++++ + +    + 
Sbjct: 587 LVQLTMDDNTQTCSLMDML---LAKKRASDRKQWLETKGNLAS-LD 628


>gi|322830737|ref|YP_004210764.1| DNA gyrase, B subunit [Rahnella sp. Y9602]
 gi|321165938|gb|ADW71637.1| DNA gyrase, B subunit [Rahnella sp. Y9602]
          Length = 804

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 224/574 (39%), Positives = 346/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I+V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIQV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  ++I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEE-EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L + + R+  + +Q +  G P  PL+      +  GT + F P    F + 
Sbjct: 121 SVVNALSEKLELVIRREGKVHTQTYVHGEPQDPLKVIGDT-DVTGTTVRFWPSFNTFTNH 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++        + + F++ GG+K +++   +N
Sbjct: 180 TEFEYEILAKRLRELSFLNSGVAIRLLDKRD-------GKNDHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   +F   T K       VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPTVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  IS   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKSKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 350 ETLMNEKLVDYLMENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPAHSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+F+
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVFI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIAMDG 563



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ LE   K  +  + I R+KGLGEM   QL ET MD  +R +LRV +   +       
Sbjct: 719 FEQALEWLVKESRRGLSIQRYKGLGEMNPDQLWETTMDPEQRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|189423086|ref|YP_001950263.1| DNA gyrase B subunit [Geobacter lovleyi SZ]
 gi|189419345|gb|ACD93743.1| DNA gyrase, B subunit [Geobacter lovleyi SZ]
          Length = 802

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 238/577 (41%), Positives = 348/577 (60%), Gaps = 17/577 (2%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
              +AS+ Y A SI++LEGL  VR RP MYIG T    LHHL  E++DN++DE +AG+ N
Sbjct: 7   NGTAASNEYGAGSIKVLEGLSAVRKRPAMYIGSTASAGLHHLVYEIVDNSIDEALAGHCN 66

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            + V+++ +G +TVVDNGRGIP + HP    +S  E++LT LHAGGKFDN +Y++SGGLH
Sbjct: 67  DVSVTINTDGSITVVDNGRGIPTDMHP-TEGRSAAEVVLTVLHAGGKFDNDSYKVSGGLH 125

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS  L + + R   I+ Q + RG P SPLE       +RGT+ITF PD +I
Sbjct: 126 GVGVSVVNALSKWLDLEIRRDGKIWRQTYHRGEPQSPLEVTG-TTRRRGTKITFMPDEEI 184

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     +    L +  +  A+L+  V+   + ++         +  +F++ GG+ ++++ 
Sbjct: 185 FET-TEYSFDVLSQRLRELAFLNAGVRIKINDER------ADGKSHDFFYEGGINSFVEY 237

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
               ++ +  +    K EK G     +E ++ + +    +I S+ N I T EGGTH +G 
Sbjct: 238 LNRAKTPLHQKPIYFKGEKGGV---EMEVSMQYNDTYDEKIFSFANNINTHEGGTHLAGF 294

Query: 335 RVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           + ALTR +  YA      +     I  DDL      ++SV I +P+F GQTKTKL + + 
Sbjct: 295 KAALTRTMNTYAAGNNLTKNAKVAISGDDLREGMTCVISVKIPQPQFEGQTKTKLGNSEV 354

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
           +  VE+ L +    YL +NP  A ++LE  IE +  R   RK R+   RK A+    LPG
Sbjct: 355 KGYVESLLNEKLAVYLEENPQVAKRILEKSIEAARAREAARKARDLTRRKGALDLGGLPG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +      EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++Q
Sbjct: 415 KLADCQEKDPALCELYLVEGDSAGGSAKQGRDRRFQAILPLKGKILNVEKARFDKMLSSQ 474

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           +I  L+ A+G    +  +    LRY ++I+MTDADVDG+HI +LLLTFFY+ M +LIE+ 
Sbjct: 475 EIRTLITAMGTGIGKDDFDIAKLRYGRIIVMTDADVDGSHILTLLLTFFYRNMQELIERG 534

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607
           HL++  PPL+++ +G K +Y  +E   Q  L E    
Sbjct: 535 HLYIAQPPLYKVKRGKKELYLRNEAALQTFLLEEGAE 571



 Score =  136 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 4/88 (4%)

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           +++L  F  + K  + I R+KGLGEM   QL ET M+   R LL+V+I   +    +   
Sbjct: 718 EELLSYFLDYAKKGLAIQRYKGLGEMNPDQLWETTMNPENRILLQVKIEDVV----EADQ 773

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
               LMG + + R +FI+  A  + ++ 
Sbjct: 774 IFTVLMGDQVEPRREFIELNALNVVNLD 801


>gi|315655462|ref|ZP_07908362.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii
           ATCC 51333]
 gi|315490402|gb|EFU80027.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii
           ATCC 51333]
          Length = 703

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 233/697 (33%), Positives = 341/697 (48%), Gaps = 63/697 (9%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y A  + +LEGLE VR RP MYIG TD + L H   E+IDN++DE +AG+ + IEV L
Sbjct: 8   SDYSAHHLSVLEGLEAVRKRPAMYIGSTDRRGLMHCLWEIIDNSVDEALAGFCDHIEVVL 67

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +    V DNGRG+P++  P     S +E++ T LHAGGKFD   Y+++GGLHGVG SV
Sbjct: 68  YPDHSAEVRDNGRGVPIDEVP-GTGLSGVEVVYTKLHAGGKFDAGLYKVAGGLHGVGASV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIP--------------------LSPLEKKEKVRN 201
           VNALS  + V V R       +F RG P                     S L K  KV+ 
Sbjct: 127 VNALSARMDVAVDRGGVTHGLQFRRGEPGVFSDTEELNPNNAFQPFEHSSKLTKLGKVKK 186

Query: 202 -KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
              GTR+ F  D +IF  +  F    L    +  ++L   +    +  +      G    
Sbjct: 187 GTTGTRVRFWADYQIFPKEVDFSYEDLSNRARKTSFLVPGLAITVTDLR-----GGETLT 241

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-----------------KKGTHRGTVE 303
           + F   GG   ++     +R++  +    G                    K+      V+
Sbjct: 242 DTFLHKGGTVDFVDYLAPDRAITDTWQLQGSGTFTEIVQVPNQQTGHLEPKEMERTCEVD 301

Query: 304 WAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK-----RAISI 357
            A+ W      +  SY N I T  GGTH +G    L + ++   +    +     +   I
Sbjct: 302 VALRWGVGYDTVEQSYVNIIETPVGGTHLAGFEAGLVKTLRAAIQANSRRLKLGAKESKI 361

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY----LVQNPI 413
             +D++     +++V + EPEF GQTK  L S   +  V   +    +        ++  
Sbjct: 362 EKEDILAGMTAVITVRLPEPEFEGQTKEALGSAKVKPIVTKVVAKELEAKLNSRKREDKN 421

Query: 414 EATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
           + + LL+ ++     RL  R  +E   RK A+    LP KL DC  +    +ELFIVEGD
Sbjct: 422 QVSTLLDKIVAEMRSRLSARLSKEITRRKNALETSTLPTKLVDCRSDDVEKSELFIVEGD 481

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           SA G+AK ARN   QA+ P+RGKILNV   G+ ++  N +   ++Q LG  +   +    
Sbjct: 482 SALGTAKAARNSEFQALFPIRGKILNVQKTGTAQMLANAECAAIIQVLGAGSGRTFDISQ 541

Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT---QGT--- 586
            RY KVI+MTDADVDGAHI +LLLT F++ M  +I    +F   PPL RI    +G    
Sbjct: 542 ARYGKVIMMTDADVDGAHIRTLLLTLFFRYMRPMIAAGRVFAAVPPLHRIQVNAKGKTPG 601

Query: 587 KSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645
           +  Y + E+   K L + ++ G+  K  I R+KGLGEM A QL ET MD   RTL R+ +
Sbjct: 602 EFRYTYSEDQLHKELGKLEQTGRTYKEPIQRYKGLGEMDADQLAETTMDPRHRTLRRIRL 661

Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           + +  ++   ++    LMG+    R +FI E AS +D
Sbjct: 662 SDE-AAVNRAEEVFELLMGSAVPPRREFIIEGASKLD 697


>gi|51598224|ref|YP_072415.1| DNA gyrase subunit B [Yersinia pseudotuberculosis IP 32953]
 gi|108810130|ref|YP_654046.1| DNA gyrase subunit B [Yersinia pestis Antiqua]
 gi|108814112|ref|YP_649879.1| DNA gyrase subunit B [Yersinia pestis Nepal516]
 gi|145597328|ref|YP_001161403.1| DNA gyrase subunit B [Yersinia pestis Pestoides F]
 gi|150260971|ref|ZP_01917699.1| DNA gyrase subunit B [Yersinia pestis CA88-4125]
 gi|153947743|ref|YP_001403092.1| DNA gyrase subunit B [Yersinia pseudotuberculosis IP 31758]
 gi|162420836|ref|YP_001608445.1| DNA gyrase subunit B [Yersinia pestis Angola]
 gi|165926159|ref|ZP_02221991.1| DNA gyrase, B subunit [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165936896|ref|ZP_02225462.1| DNA gyrase, B subunit [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166009503|ref|ZP_02230401.1| DNA gyrase, B subunit [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166213310|ref|ZP_02239345.1| DNA gyrase, B subunit [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167401541|ref|ZP_02307035.1| DNA gyrase, B subunit [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167422871|ref|ZP_02314624.1| DNA gyrase, B subunit [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167425446|ref|ZP_02317199.1| DNA gyrase, B subunit [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|170022266|ref|YP_001718771.1| DNA gyrase subunit B [Yersinia pseudotuberculosis YPIII]
 gi|186893348|ref|YP_001870460.1| DNA gyrase subunit B [Yersinia pseudotuberculosis PB1/+]
 gi|218931071|ref|YP_002348946.1| DNA gyrase subunit B [Yersinia pestis CO92]
 gi|229839801|ref|ZP_04459960.1| DNA gyrase subunit B [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229841886|ref|ZP_04462042.1| DNA gyrase subunit B [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229896763|ref|ZP_04511926.1| DNA gyrase subunit B [Yersinia pestis Pestoides A]
 gi|229904651|ref|ZP_04519762.1| DNA gyrase subunit B [Yersinia pestis Nepal516]
 gi|270488362|ref|ZP_06205436.1| DNA gyrase, B subunit [Yersinia pestis KIM D27]
 gi|294505622|ref|YP_003569684.1| DNA gyrase subunit B [Yersinia pestis Z176003]
 gi|51591506|emb|CAH23178.1| DNA gyrase subunit B [Yersinia pseudotuberculosis IP 32953]
 gi|108777760|gb|ABG20279.1| DNA gyrase subunit B [Yersinia pestis Nepal516]
 gi|108782043|gb|ABG16101.1| DNA gyrase subunit B [Yersinia pestis Antiqua]
 gi|115349682|emb|CAL22663.1| DNA gyrase subunit B [Yersinia pestis CO92]
 gi|145209024|gb|ABP38431.1| DNA gyrase subunit B [Yersinia pestis Pestoides F]
 gi|149290379|gb|EDM40456.1| DNA gyrase subunit B [Yersinia pestis CA88-4125]
 gi|152959238|gb|ABS46699.1| DNA gyrase, B subunit [Yersinia pseudotuberculosis IP 31758]
 gi|162353651|gb|ABX87599.1| DNA gyrase, B subunit [Yersinia pestis Angola]
 gi|165915138|gb|EDR33749.1| DNA gyrase, B subunit [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165922019|gb|EDR39196.1| DNA gyrase, B subunit [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165991425|gb|EDR43726.1| DNA gyrase, B subunit [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166205608|gb|EDR50088.1| DNA gyrase, B subunit [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166958263|gb|EDR55284.1| DNA gyrase, B subunit [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167048923|gb|EDR60331.1| DNA gyrase, B subunit [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167055460|gb|EDR65253.1| DNA gyrase, B subunit [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169748800|gb|ACA66318.1| DNA gyrase, B subunit [Yersinia pseudotuberculosis YPIII]
 gi|186696374|gb|ACC87003.1| DNA gyrase, B subunit [Yersinia pseudotuberculosis PB1/+]
 gi|229678769|gb|EEO74874.1| DNA gyrase subunit B [Yersinia pestis Nepal516]
 gi|229691225|gb|EEO83278.1| DNA gyrase subunit B [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229696167|gb|EEO86214.1| DNA gyrase subunit B [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229700201|gb|EEO88237.1| DNA gyrase subunit B [Yersinia pestis Pestoides A]
 gi|262363786|gb|ACY60507.1| DNA gyrase subunit B [Yersinia pestis D106004]
 gi|262367723|gb|ACY64280.1| DNA gyrase subunit B [Yersinia pestis D182038]
 gi|270336866|gb|EFA47643.1| DNA gyrase, B subunit [Yersinia pestis KIM D27]
 gi|294356081|gb|ADE66422.1| DNA gyrase subunit B [Yersinia pestis Z176003]
 gi|320017424|gb|ADW00996.1| DNA gyrase subunit B [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 804

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 226/574 (39%), Positives = 346/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+ YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEILV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGMHDE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L + + R+  +  Q +  G+P +PL+   +   + GT + F P  + F + 
Sbjct: 121 SVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-EQTGTTVRFWPSFQTFTNN 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V       +   E       + F++ GG+K +++   +N
Sbjct: 180 TEFQYEILAKRLRELSFLNSGVSIKLKDKRNDKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  ++F   T K       VE A+ W +     I  + N I   +GGTH  G R A+
Sbjct: 233 KNPIHPKVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  IS   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 350 ETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+F+
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D++  ++        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDDAMEQYQMTLALDG 563



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEEALDWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVMVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALRAANID 803


>gi|326561292|gb|EGE11651.1| DNA topoisomerase IV subunit B [Moraxella catarrhalis 46P47B1]
 gi|326567837|gb|EGE17941.1| DNA topoisomerase IV subunit B [Moraxella catarrhalis 12P80B1]
 gi|326573752|gb|EGE23710.1| DNA topoisomerase IV subunit B [Moraxella catarrhalis O35E]
          Length = 629

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 250/646 (38%), Positives = 366/646 (56%), Gaps = 26/646 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y++  + +LEGLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  I V L
Sbjct: 2   STYNSQKLEVLEGLEPVRRRPGMY---TDTMRPNHLAQEVIDNSVDEALAGFARHIIVIL 58

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G L+V D+GRG+P + HP+F N+S +E+ILT LHAGGKF    Y++SGGLHGVGISV
Sbjct: 59  HKDGSLSVEDDGRGMPTDIHPEF-NQSGVELILTRLHAGGKFSTENYQVSGGLHGVGISV 117

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + VTV R   + +  F  G P++ L   +   + KRGT++ F  D + F    
Sbjct: 118 VNALSTRVEVTVWRDGLMHTMAFEHGEPVTALIADKSANKKKRGTKVQFWVDGQYFDTP- 176

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L    ++KA L+  +   +  + E  +       E + F  G+  YL  +L+  
Sbjct: 177 KFSIKTLKHNLKAKAVLAAGLHIDFISEIEPND------SESWQFTDGVVQYLTEQLDGS 230

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVAL 338
             +  E F    E     RG   +A++W  E       SY N I T +GGTH +GLR  +
Sbjct: 231 DTLPKEPFYVSQEPTLGERGGATFALSWLAEGGTPITESYVNLIPTAQGGTHVNGLRTGV 290

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ ++     R I +  +D+      ILS+   EP+F+GQTK +L S +A   V+
Sbjct: 291 LEALREFCDIHNLLPRQIKLSGEDVWDGVNYILSLKFVEPQFSGQTKERLSSREAAPLVQ 350

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
              +D F  +L Q+P  A  + E  I ++ +RL     ++V RK   +   LPGKL DC 
Sbjct: 351 TLAKDAFSLWLNQHPDHAKAIAELAISKATKRLA--TAQKVARKKVTQGPALPGKLWDCR 408

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
             +  G+ELF+VEG SAGGSAKQAR+ + QA+LPLRGKILN     S+ + ++Q+I D+ 
Sbjct: 409 GGLKEGSELFLVEGQSAGGSAKQARDNAFQAILPLRGKILNAWEVSSDTVLSSQEIHDIA 468

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S     +LRY+K+ I+ DAD DG HIA+L+   F +    LIE  HL++  P
Sbjct: 469 IAIGVDPASDDL-SELRYDKICILADADSDGLHIATLICALFVKHFPALIEAGHLYVAVP 527

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G    YA D E  +++L      G  K +I+RFKGLGEM  SQLKET M+ + 
Sbjct: 528 PLYRIDAGKDVYYALDNEELEQVLARL---GNKKTQITRFKGLGEMNPSQLKETTMNPDT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+R+    DL+    T   ++ L+  K + +R ++++ +    D
Sbjct: 585 RKLIRL----DLDDTASTNSIMDMLLAKKRSADRKQWLETKGDLAD 626


>gi|238759587|ref|ZP_04620749.1| DNA gyrase subunit B [Yersinia aldovae ATCC 35236]
 gi|238702246|gb|EEP94801.1| DNA gyrase subunit B [Yersinia aldovae ATCC 35236]
          Length = 804

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 225/574 (39%), Positives = 345/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+ YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHSDNSVSVQDDGRGIPTGMHDE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L + + R   +  Q +  G+P +PL+   +     GT + F P  + F + 
Sbjct: 121 SVVNALSEKLELVIRRDGKVHEQTYKMGVPQAPLKMVGET-ELTGTTVRFWPSFQTFTNN 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V      ++   E       + F++ GG++ +++   +N
Sbjct: 180 IEFQYEILAKRLRELSFLNSGVSIKLKDNRNDKE-------DHFHYEGGIRAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  ++F   T K       VE A+ W +     I  + N I   +GGTH  G R A+
Sbjct: 233 KNPIHPKVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  IS   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 350 ETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+F+
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D++  ++        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDDAMEQYQMTLALDG 563



 Score =  130 bits (327), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            +  LE   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEDALEWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPTSRRMLRVMVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALRAANID 803


>gi|184159873|ref|YP_001848212.1| DNA topoisomerase IV subunit B [Acinetobacter baumannii ACICU]
 gi|183211467|gb|ACC58865.1| Type topoisomerase IV (DNA gyrase/topo IV) [Acinetobacter baumannii
           ACICU]
          Length = 628

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 257/646 (39%), Positives = 373/646 (57%), Gaps = 29/646 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y A S+ +L GL+PVR RPGMY   TD    +HL  EVIDNA+DE +AG+A+ I V++ 
Sbjct: 3   QYTAQSLEVLSGLDPVRRRPGMY---TDTSRPNHLAQEVIDNAVDEALAGHADKICVTVY 59

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G L+V DNGRG+PV+ HP++  +S +EIILT LHAGGKF    Y+ SGGLHGVGISVV
Sbjct: 60  KDGSLSVEDNGRGMPVDIHPEY-GQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISVV 118

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGDKA 220
           NALS  + V V RQ  ++   F +G P++PL   E    +   GT + F P+ K F    
Sbjct: 119 NALSTRVEVEVQRQGNLYQMAFEQGEPVAPLAVLEGKAPKRATGTTVRFWPEAKYFDSP- 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L    ++KA L+  +K  +             EK E+ F  GL  YL  +L++R
Sbjct: 178 KFALKALKHNLKAKAVLAAGLKITYIDQ-------INDEKIEWQFENGLVDYLMDELQDR 230

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVAL 338
            ++ +  F    +     R   E+AI W  E  E    SY N I T +GGTH +GLR  +
Sbjct: 231 EILPNPAFVSSGQAD---RAACEFAICWNVEGGEQVQESYVNLIPTAQGGTHVNGLRSGV 287

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           T  ++++ EL     R + + ++D+      ILS+  +EP+F+GQTK +L S +A   V 
Sbjct: 288 TEALREFCELRNLLPRNLKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREAANIVL 347

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
           N  +D F  +L Q+   A +L E  I ++  RL+    ++V RK  +    LPGKLADC 
Sbjct: 348 NIAKDAFALWLNQHAEIAMQLAEMAISKAGRRLK--AAKKVERKKIVSGPALPGKLADCV 405

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN-QQIMDL 516
                 +ELFIVEGDSAGGSAKQAR+++ QA++P+RGKILN     S+++  + Q++ D+
Sbjct: 406 GQTREESELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASSQEVHDI 465

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S     +LRY K+ I+ DAD DG HIA+LL   F +    L+E+ HL++  
Sbjct: 466 AIAIGVDPGSDDL-SELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAM 524

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLFRI  G    YA D+E  + IL+  K  G    +I+RFKGLGEM A QL+ET MD N
Sbjct: 525 PPLFRIDIGKDVHYALDDEELETILKNVK--GNKNPQITRFKGLGEMNAIQLRETTMDPN 582

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            R L++++++    +          L   +A +R ++++++ +  D
Sbjct: 583 TRRLVQLDLDDAHLTAGLLDKL---LAKKRAADRKQWLEQKGNLAD 625


>gi|168699793|ref|ZP_02732070.1| DNA gyrase subunit B [Gemmata obscuriglobus UQM 2246]
          Length = 650

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 254/656 (38%), Positives = 363/656 (55%), Gaps = 26/656 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y    I++LEGLEPVR RP MYIGG D K LHHL  E++DNA+DE I GYA+ I V+
Sbjct: 9   TAAYRTEDIQVLEGLEPVRKRPAMYIGGVDAKGLHHLAWEILDNAVDEYINGYADHITVT 68

Query: 101 LDGNG-FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST--YEISGGLHGV 157
           L  +G  +T+ DNGRGIPV+ HPK   K+ LE++LT LHAGGKF  S   Y  SGGLHGV
Sbjct: 69  LHKSGQAITIFDNGRGIPVDMHPKH-KKTGLELVLTVLHAGGKFGESESGYIHSGGLHGV 127

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS  L  TV R    + Q++++G PL+ +EK    R   GT I F PD  IF 
Sbjct: 128 GASVVNALSKRLVATVRRDGFEYRQEYAKGTPLAKIEKVGPFRGH-GTGIYFEPDDTIFK 186

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               FD   L    +  +++   ++  +  +          E  E   PGGL  +L   +
Sbjct: 187 TVR-FDPDTLRARLEDTSFVHSGLRITFKNE-------VTGETLELANPGGLPAFLGRLV 238

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337
            +         +    ++   +  V              SY N I T +GGTHE+GL+ A
Sbjct: 239 LDGQKPPVTEASFSAVRETGDKIEVALQWTE-STEETYRSYANGIRTPQGGTHENGLKSA 297

Query: 338 LTRGIKKYAEL----TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
           L + ++ Y +      +  + + I +DD+    V +LSVF+R+P F  QTK +L + + +
Sbjct: 298 LRKAVQSYIDTHDDVKKQSKGLKITADDIREGIVAVLSVFLRDPMFQSQTKDRLTNTEME 357

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV--NRKTAIRKLRLPG 451
            +V+N +R   + +L  N   A  ++  ++  +  R   R  +E    +    ++L LPG
Sbjct: 358 GSVDNFVRPALEAWLNNNKTAADSIVGRIVIAARMREASRAAKEEVKRKAPGSKRLSLPG 417

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC       TELFIVEGDSAGGSAKQ RN S QAVLPLRGKILN     + K   NQ
Sbjct: 418 KLADCKSTDRDETELFIVEGDSAGGSAKQGRNNSTQAVLPLRGKILNCEGLPASKALTNQ 477

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I DLV A+G     ++    LRY K+I++ DAD DG HI +L+L F ++ M DLI   H
Sbjct: 478 EIADLVTAIGTGIGDKFNYGGLRYGKIILLMDADADGCHITTLMLAFLFRHMPDLIRHGH 537

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPL+R+  G    +  D++ K++++E+  K  + K E++RFKGLGEM A  L  T
Sbjct: 538 VYIGRPPLYRVNVGKDIHWVQDDQGKEELVEKLTKANR-KFEVTRFKGLGEMDAKDLAAT 596

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI--DDVG 685
            +D   RTLL+V  +    +  +T  +   L+G  A  R+ FI  +A     +D+ 
Sbjct: 597 TLDRRTRTLLKVSTDG---AALETDRTFADLLGKDAKPRYDFIMAKADQAVDEDLD 649


>gi|258622961|ref|ZP_05717976.1| DNA gyrase, subunit B [Vibrio mimicus VM573]
 gi|258626085|ref|ZP_05720936.1| DNA gyrase, subunit B [Vibrio mimicus VM603]
 gi|258581611|gb|EEW06509.1| DNA gyrase, subunit B [Vibrio mimicus VM603]
 gi|258584744|gb|EEW09478.1| DNA gyrase, subunit B [Vibrio mimicus VM573]
          Length = 805

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 230/574 (40%), Positives = 350/574 (60%), Gaps = 17/574 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGY   I V
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+++ +T+ R   I +Q +  G+P +PL    +   + GT + F P  + F + 
Sbjct: 121 SVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLSVVGET-ERTGTTVRFWPSAQTFTNI 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V    + ++E  +K      + F + GG++ ++     N
Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEGGIQAFVTHLNRN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  ++F    E++     +VE A+ W +     I  + N I   +GGTH +G R AL
Sbjct: 233 KTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGAL 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 351 ESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  DE+   +        G
Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMNQYQVALAMDG 564



 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G +             LE   K  +  + I R+KGLGEM   QL ET MD + R ++
Sbjct: 708 IKRGERVQPISS---FAAALEWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPDTRRMM 764

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +       +    LMG + + R  FI+  A  + ++ 
Sbjct: 765 QVTIEDAVG----ADELFTTLMGDQVEPRRAFIETNALKVANLD 804


>gi|22127978|ref|NP_671401.1| DNA gyrase subunit B [Yersinia pestis KIM 10]
 gi|45443725|ref|NP_995264.1| DNA gyrase subunit B [Yersinia pestis biovar Microtus str. 91001]
 gi|21961123|gb|AAM87652.1|AE014012_9 DNA gyrase subunit B, type II topoisomerase [Yersinia pestis KIM
           10]
 gi|45438595|gb|AAS64141.1| DNA gyrase subunit B [Yersinia pestis biovar Microtus str. 91001]
          Length = 805

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 226/574 (39%), Positives = 346/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+ YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 3   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEILV 62

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 63  TIHADNSVSVQDDGRGIPTGMHDE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 121

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L + + R+  +  Q +  G+P +PL+   +   + GT + F P  + F + 
Sbjct: 122 SVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-EQTGTTVRFWPSFQTFTNN 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V       +   E       + F++ GG+K +++   +N
Sbjct: 181 TEFQYEILAKRLRELSFLNSGVSIKLKDKRNDKE-------DHFHYEGGIKAFVEYLNKN 233

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  ++F   T K       VE A+ W +     I  + N I   +GGTH  G R A+
Sbjct: 234 KNPIHPKVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  IS   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 351 ETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+F+
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D++  ++        G
Sbjct: 531 AQPPLYKVKKGKQEQYIKDDDAMEQYQMTLALDG 564



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 720 FEEALDWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVMVKDAI----AAD 775

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 776 QLFTTLMGDAVEPRRAFIEENALRAANID 804


>gi|262172781|ref|ZP_06040459.1| DNA gyrase subunit B [Vibrio mimicus MB-451]
 gi|261893857|gb|EEY39843.1| DNA gyrase subunit B [Vibrio mimicus MB-451]
          Length = 805

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 230/574 (40%), Positives = 350/574 (60%), Gaps = 17/574 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGY   I V
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+++ +T+ R   I +Q +  G+P +PL    +   + GT + F P  + F + 
Sbjct: 121 SVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLSVVGET-ERTGTTVRFWPSAQTFTNI 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V    + ++E  +K      + F + GG++ ++     N
Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEGGIQAFVTHLNRN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  ++F    E++     +VE A+ W +     I  + N I   +GGTH +G R AL
Sbjct: 233 KTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGAL 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 351 ESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  DE+   +        G
Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMNQYQVALAMDG 564



 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G +             LE   K  +  + I R+KGLGEM   QL ET MD + R ++
Sbjct: 708 IKRGERVQPISS---FAAALEWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPDTRRMM 764

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +       +    LMG + + R  FI+  A  + ++ 
Sbjct: 765 QVTIEDAVG----ADELFTTLMGDQVEPRRAFIETNALKVANLD 804


>gi|238765067|ref|ZP_04626002.1| DNA gyrase subunit B [Yersinia kristensenii ATCC 33638]
 gi|238696684|gb|EEP89466.1| DNA gyrase subunit B [Yersinia kristensenii ATCC 33638]
          Length = 804

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 225/574 (39%), Positives = 346/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+ YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHSDNSVSVQDDGRGIPTGMHDE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L + + R+  +  Q +  G+P +PL+   +  ++ GT + F P  + F + 
Sbjct: 121 SVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DQTGTTVRFWPSFQTFTNN 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V       +   E       + F++ GG++ +++   +N
Sbjct: 180 TEFQYEILAKRLRELSFLNSGVSIKLKDKRNDRE-------DHFHYEGGIRAFVEYLSKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  ++F   T K       VE A+ W +     I  + N I   +GGTH  G R A+
Sbjct: 233 KNPIHPKVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y        K  IS   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNSYMGKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 350 ETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+F+
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D++  ++        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDDAMEQYQMTLALDG 563



 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEEALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPTSRRMLRVMVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALRAANID 803


>gi|269125855|ref|YP_003299225.1| DNA topoisomerase [Thermomonospora curvata DSM 43183]
 gi|268310813|gb|ACY97187.1| DNA topoisomerase (ATP-hydrolyzing) [Thermomonospora curvata DSM
           43183]
          Length = 696

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 232/685 (33%), Positives = 329/685 (48%), Gaps = 57/685 (8%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y A  + +LEGLE VR RPGMYIG TD + L H   E++DN++DE +AG+   I V L  
Sbjct: 17  YSARHLSVLEGLEAVRKRPGMYIGSTDSRGLTHCLWEIVDNSVDEALAGHCTKISVVLHA 76

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G   V DNGRGIPV+  P+      +E+++T LHAGGKF   +Y  SGGLHGVG SVVN
Sbjct: 77  DGSYEVCDNGRGIPVDIEPR-TGLPGVELVMTRLHAGGKFGGVSYTASGGLHGVGASVVN 135

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSP---------------LEKKEKVRNKRGTRIT 208
           ALS  L V V R     +  F RG+P                   +  E      GTR+ 
Sbjct: 136 ALSARLDVEVDRDGHTHAMSFKRGLPGEFAAPGPERRFKKKSGLRKIAEVPPGVTGTRVR 195

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F PD +IF   A  D   ++   +  A+L   ++     ++        P  E F F GG
Sbjct: 196 FWPDLQIFLKDARIDTETVMDRMRQTAFLVPGLEISVRDER-----GEEPVAETFKFDGG 250

Query: 269 LKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTVEWAIAWCEEN 312
           +  +     ++  +  +  F G+                          V+ A+ W    
Sbjct: 251 ISEFCDYLAKDEPICDTLRFRGRGHFTETVPVLDEQGHLTPTDVERDLEVDVALRWGTGY 310

Query: 313 PE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGI 369
                S+ N I T + GTH +G   AL R I +    T+  +        DD++     +
Sbjct: 311 DTVCKSFVNVIATPKHGTHVTGFDRALVRTINEQLRATKLLKNGDEPVTKDDILEGLTAV 370

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER---- 425
           ++V + EP+F GQTK  L +  A R V   + +            A + +  V+E+    
Sbjct: 371 VTVRLPEPQFEGQTKEVLGTSAATRIVARVVSEGLKEAFDNPKRGARQQMRAVLEKIVAA 430

Query: 426 -SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
                  R  +    RK A+    LP KL DC       +ELFIVEGDSA G+AK ARN 
Sbjct: 431 AKARIAARTHRDNQRRKNALENSALPAKLVDCRTTDD-RSELFIVEGDSALGTAKLARNS 489

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA+LP+RGKILNV  A    +  N +   ++Q +G  +   +  E  RY +VI+M DA
Sbjct: 490 EFQALLPIRGKILNVQKASMADMLKNAECAAIIQVVGAGSGRTFDLEAARYGRVILMADA 549

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-----TQGT-KSVYAHDEEHKQ 598
           DVDGAHI  LLLT FY+ M  ++E   +F   PPL RI      +G  K VY + +   +
Sbjct: 550 DVDGAHIRCLLLTLFYRYMRPMLEAGRVFAAVPPLHRIQLTNPKKGQDKYVYCYTDAELR 609

Query: 599 KILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           + L EF++ G + K  I R+KGLGEM A QL ET MD  +R          L+  ++   
Sbjct: 610 RKLVEFERRGIRWKEPIQRYKGLGEMDADQLAETTMDPRRRM----LRRIRLHDAEEAAR 665

Query: 658 SINKLMGTKADERFKFIQERASFID 682
             + LMG++   R +FI   A+ +D
Sbjct: 666 IFDLLMGSEVAPRREFITAGAAELD 690


>gi|317494670|ref|ZP_07953082.1| DNA gyrase, subunit B [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917272|gb|EFV38619.1| DNA gyrase, subunit B [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 804

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 227/574 (39%), Positives = 343/574 (59%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+ YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY   I V
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHSDNSVSVQDDGRGIPTGLHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L + + R+  +  Q ++ G+P  PL+         GT + F P  + F + 
Sbjct: 121 SVVNALSEKLELVIRREGKVHEQTYAHGVPQFPLKVVGDT-ETTGTTVRFWPSMETFSNH 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFQYDILAKRLRELSFLNSGVSIRLRDKRDNRE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   +F   T K       VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y E      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNSYMEKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL +NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 350 ETQMNELLAEYLQENPGDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPAHSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+F+
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D++   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDDAMDQYQLSIALDG 563



 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ LE   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALEWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPQSRRMLRVTVKDAV----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALRAANLD 803


>gi|262166787|ref|ZP_06034524.1| DNA gyrase subunit B [Vibrio mimicus VM223]
 gi|262026503|gb|EEY45171.1| DNA gyrase subunit B [Vibrio mimicus VM223]
          Length = 805

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 231/574 (40%), Positives = 350/574 (60%), Gaps = 17/574 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGY   I V
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+++ +T+ R   I SQ +  G+P +PL    +   + GT + F P  + F + 
Sbjct: 121 SVVNALSEKVLLTIHRGGKIHSQTYHHGVPQAPLSVVGET-ERTGTTVRFWPSAQTFTNI 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V    + ++E  +K      + F + GG++ ++     N
Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEGGIQAFVTHLNRN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  ++F    E++     +VE A+ W +     I  + N I   +GGTH +G R AL
Sbjct: 233 KTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGAL 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 351 ESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  DE+   +        G
Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMNQYQVALAMDG 564



 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G +             LE   K  +  + I R+KGLGEM   QL ET MD + R ++
Sbjct: 708 IKRGERVQPISS---FAAALEWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPDTRRMM 764

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +       +    LMG + + R  FI+  A  + ++ 
Sbjct: 765 QVTIEDAVG----ADELFTTLMGDQVEPRRAFIETNALKVANLD 804


>gi|188535559|ref|YP_001909356.1| DNA gyrase subunit B [Erwinia tasmaniensis Et1/99]
 gi|188030601|emb|CAO98496.1| DNA gyrase subunit B [Erwinia tasmaniensis Et1/99]
          Length = 802

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 222/566 (39%), Positives = 348/566 (61%), Gaps = 18/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ + I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDILV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEE-EGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L +T+ R+  +  Q +  G+P + L    +  +  GTR+ F P  + F + 
Sbjct: 121 SVVNALSEKLELTIRREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++        + + +++ GG+K +++   +N
Sbjct: 180 VEFEYEILAKRLRELSFLNSGVSIKLEDKRD-------GKTDHYHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I    F   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNAFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL+++P +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLAEYLLEHPGDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +E+++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+  +Q++  
Sbjct: 410 CQERDPALSEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  D+E   + 
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQY 555



 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ +E   K  +  + + R+KGLGEM   QL ET MD + R +LRV I   +       
Sbjct: 717 FEQAIEWLGKESRRGLSVQRYKGLGEMNPEQLWETTMDPDSRRMLRVTIKDAV----AAD 772

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 773 QLFTTLMGDAVEPRRAFIEENALRAANID 801


>gi|253987487|ref|YP_003038843.1| DNA gyrase subunit B [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253778937|emb|CAQ82097.1| DNA gyrase subunit B [Photorhabdus asymbiotica]
          Length = 805

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 230/579 (39%), Positives = 346/579 (59%), Gaps = 18/579 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+ YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ N + V
Sbjct: 3   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCNEVIV 62

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 63  TIHADNSVSVQDDGRGIPTGIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 121

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L + + R   +  Q +  G+P SPL+   +   + GTR+ F P    F + 
Sbjct: 122 SVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKIVGET-EQTGTRVRFWPSMDTFRNN 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V       +   E       + F++ GG+K +++   +N
Sbjct: 181 TEFQHDILAKRLRELSFLNSGVSIRLIDKRTNTE-------DHFHYEGGIKAFVEFLNKN 233

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   +F   TEK G     VE ++ W +     I  + N I   +GGTH  G R A+
Sbjct: 234 KTPIHPNVFYFSTEKDGI---GVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 290

Query: 339 TRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     V ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 351 ETLMNEKLVEYLLENPNDAKTVVSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+F+
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613
             PPL+++ +G +  Y  D+E   +        G     
Sbjct: 531 AQPPLYKVKKGKQEQYIKDDEAMDEYQLSIALDGASLYT 569



 Score =  136 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             ++ LE   K  +  + I R+KGLGEM   QL ET M+   R ++RV +   +     T
Sbjct: 719 DFEQALEWLTKESRRGLSIQRYKGLGEMNPEQLWETTMNPETRRMMRVTVKDAI----AT 774

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
                 LMG   + R  FI+E A    ++ 
Sbjct: 775 DQLFTTLMGDAVEPRRAFIEENALKAANID 804


>gi|253686413|ref|YP_003015603.1| DNA gyrase, B subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251752991|gb|ACT11067.1| DNA gyrase, B subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 805

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 221/566 (39%), Positives = 345/566 (60%), Gaps = 17/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY   I +
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIII 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEE-EGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L + + R   +  Q +  G+P +PL    +  N+ GT + F P  + F + 
Sbjct: 121 SVVNALSEKLKLVIHRDGKLHEQTYKHGVPQAPLAVTGET-NRTGTTVRFWPSHETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V      ++E        + + +++ GG+K ++     N
Sbjct: 180 VEFEYEILAKRLRELSFLNSGVSIRLIDEREKD------KADHYHYDGGIKAFVDYLNRN 233

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   +F   T K       VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 234 KTPIHPNVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNTYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLAD 455
           E+ + +    YL++NP +A  ++  +I+ +  R   RK      RK A+    LPGKLAD
Sbjct: 351 ESLMNEKLVDYLMENPSDAKIVVGKIIDAARAREAARKARDMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY+++ +++E+ H+++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQLPEIVERGHVYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  D+E   + 
Sbjct: 531 AQPPLYKVKKGKQEQYIKDDEAMDQY 556



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ LE   K  +  + + R+KGLGEM   QL ET MD N R +LRV +   +       
Sbjct: 720 FEQALEWLVKESRRGLTVQRYKGLGEMNPDQLWETTMDPNSRRMLRVTVKDAI----AAD 775

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           +    LMG   + R  FI+E A    ++ 
Sbjct: 776 ELFTTLMGDAVEPRRAFIEENALKAMNID 804


>gi|326559446|gb|EGE09869.1| DNA topoisomerase IV subunit B [Moraxella catarrhalis 7169]
 gi|326565180|gb|EGE15371.1| DNA topoisomerase IV subunit B [Moraxella catarrhalis 103P14B1]
 gi|326568161|gb|EGE18243.1| DNA topoisomerase IV subunit B [Moraxella catarrhalis BC8]
 gi|326572201|gb|EGE22197.1| DNA topoisomerase IV subunit B [Moraxella catarrhalis BC7]
 gi|326572804|gb|EGE22789.1| DNA topoisomerase IV subunit B [Moraxella catarrhalis CO72]
 gi|326574623|gb|EGE24559.1| DNA topoisomerase IV subunit B [Moraxella catarrhalis 101P30B1]
          Length = 629

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 250/646 (38%), Positives = 366/646 (56%), Gaps = 26/646 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y++  + +LEGLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  I V L
Sbjct: 2   STYNSQKLEVLEGLEPVRRRPGMY---TDTMRPNHLAQEVIDNSVDEALAGFARHIIVIL 58

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G L+V D+GRG+P + HP+F N+S +E+ILT LHAGGKF    Y++SGGLHGVGISV
Sbjct: 59  HKDGSLSVEDDGRGMPTDIHPEF-NQSGVELILTRLHAGGKFSTENYQVSGGLHGVGISV 117

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + VTV R   + +  F  G P++ L   +   + KRGT++ F  D + F    
Sbjct: 118 VNALSTRVEVTVWRDGLMHTMAFEHGEPVTALIADKSANKKKRGTKVQFWVDGQYFDTP- 176

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L    ++KA L+  +   +  + E  +       E + F  G+  YL  +L+  
Sbjct: 177 KFSIKTLKHNLKAKAVLAAGLHIDFISEIEPND------SESWQFTDGVVQYLTEQLDGS 230

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVAL 338
             +  E F    E     RG   +A++W  E       SY N I T +GGTH +GLR  +
Sbjct: 231 DTLPKEPFYVSQEPTLGERGGATFALSWLAEGGTPITESYVNLIPTAQGGTHVNGLRTGV 290

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ ++     R I +  +D+      ILS+   EP+F+GQTK +L S +A   V+
Sbjct: 291 LEALREFCDIHNLLPRQIKLSGEDVWDGVNYILSLKFVEPQFSGQTKERLSSREAAPLVQ 350

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
              +D F  +L Q+P  A  + E  I ++ +RL     ++V RK   +   LPGKL DC 
Sbjct: 351 TLAKDAFSLWLNQHPDHAKAIAELAISKATKRLA--TAQKVARKKVTQGPALPGKLWDCR 408

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
             +  G+ELF+VEG SAGGSAKQAR+ + QA+LPLRGKILN     S+ + ++Q+I D+ 
Sbjct: 409 GGLKEGSELFLVEGQSAGGSAKQARDNAFQAILPLRGKILNAWEVSSDTVLSSQEIHDIA 468

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S     +LRY+K+ I+ DAD DG HIA+L+   F +    LIE  HL++  P
Sbjct: 469 IAIGVDPASDDL-SELRYDKICILADADSDGLHIATLICALFVKHFPALIEAGHLYVAVP 527

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI  G    YA D E  +++L      G  K +I+RFKGLGEM  SQLKET M+ + 
Sbjct: 528 PLYRIDAGKDVYYALDNEELEQVLARL---GNKKTQITRFKGLGEMNPSQLKETTMNPDT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+R+    DL+    T   ++ L+  K + +R ++++ +    D
Sbjct: 585 RKLIRL----DLDDTASTNSIMDMLLAKKRSADRKRWLETKGDLAD 626


>gi|300719138|ref|YP_003743941.1| DNA gyrase subunit B [Erwinia billingiae Eb661]
 gi|299064974|emb|CAX62094.1| DNA gyrase subunit B [Erwinia billingiae Eb661]
          Length = 802

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 224/574 (39%), Positives = 349/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDILV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEE-EGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L +T+ R+  + +Q +  G+P +PL    +  +  GTR+ F P  + F + 
Sbjct: 121 SVVNALSEKLELTIRREGKVHNQIYVHGVPQAPLHVTGET-DLTGTRVRFWPSHQTFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++         ++ +++ GG+K +++   +N
Sbjct: 180 TDFEYEILAKRLRELSFLNSGVSIKLEDKRDA-------RQDHYHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   +F   TEK G     VE A+ W +     I  + N I   +GGTH  G R A+
Sbjct: 233 KTPIHPNVFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +      E+++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+  +Q++  
Sbjct: 410 CQERDPALCEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D++   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDDAMDQYQIAIALDG 563



 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 4/91 (4%)

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
           E  ++ ++   K  +  + + R+KGLGEM   QL ET MD + R +LRV +   +     
Sbjct: 715 ESFEQAMDWLVKESRRGLTVQRYKGLGEMNPEQLWETTMDPDSRRMLRVTVKDAI----A 770

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
                  LMG   + R  FI+E A    ++ 
Sbjct: 771 ADQLFTTLMGDAVEPRRAFIEENALRAANID 801


>gi|313772173|gb|EFS38139.1| DNA gyrase, B subunit [Propionibacterium acnes HL074PA1]
 gi|313810038|gb|EFS47759.1| DNA gyrase, B subunit [Propionibacterium acnes HL083PA1]
 gi|313830365|gb|EFS68079.1| DNA gyrase, B subunit [Propionibacterium acnes HL007PA1]
 gi|313833738|gb|EFS71452.1| DNA gyrase, B subunit [Propionibacterium acnes HL056PA1]
 gi|314973369|gb|EFT17465.1| DNA gyrase, B subunit [Propionibacterium acnes HL053PA1]
 gi|314976048|gb|EFT20143.1| DNA gyrase, B subunit [Propionibacterium acnes HL045PA1]
 gi|314983931|gb|EFT28023.1| DNA gyrase, B subunit [Propionibacterium acnes HL005PA1]
 gi|315095914|gb|EFT67890.1| DNA gyrase, B subunit [Propionibacterium acnes HL038PA1]
 gi|327326196|gb|EGE67986.1| DNA gyrase, B subunit [Propionibacterium acnes HL096PA2]
 gi|327445914|gb|EGE92568.1| DNA gyrase, B subunit, carboxyl terminus [Propionibacterium acnes
           HL043PA2]
 gi|327448106|gb|EGE94760.1| DNA gyrase, B subunit [Propionibacterium acnes HL043PA1]
 gi|328760843|gb|EGF74409.1| DNA gyrase, B subunit [Propionibacterium acnes HL099PA1]
          Length = 719

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 235/720 (32%), Positives = 337/720 (46%), Gaps = 56/720 (7%)

Query: 18  GSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHL 77
            +S                  S S  Y A ++ +LEGLE VR RP MYIG TD + L H 
Sbjct: 5   STSSANSSETPRGKGDTVRTASTSREYGAKNLLVLEGLEAVRKRPAMYIGSTDTRGLMHC 64

Query: 78  FSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137
             E+ DN +DE +AGY   I V+L+  G + V D GRGIPV+  P     S LE++ T L
Sbjct: 65  LWEIFDNGVDEALAGYGRRITVTLEKAGSILVTDEGRGIPVDVEP-HTGLSGLEVVYTKL 123

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP-------- 189
           HAGGKF    Y +SGGLHGVG SVVNA+S  L V V R++T++   F RG+P        
Sbjct: 124 HAGGKFGGGAYNVSGGLHGVGASVVNAVSVRLDVEVDRKSTVWGMSFRRGVPGVFEGEGP 183

Query: 190 -------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
                      +  +  R   GTR+ + PD +IF   A    ++L    +  A+L   ++
Sbjct: 184 DAPFTPGSGVRKVGKAKRGVTGTRVRYWPDRQIFLPDAKLSWSKLADRARQTAFLVPGLE 243

Query: 243 TCWSCDKEIAEKYGIPEK-----EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE---- 293
              + ++ I       +      E   F GG+  + +    ++ + +     G+T     
Sbjct: 244 IVITDERGIQTDPETGDVLETVSETMRFDGGISEFAEYLATDQPVNNVMRLQGETSFTET 303

Query: 294 ------------KKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340
                               V+ A+ W         S+ N I T +GGTH  G    L R
Sbjct: 304 VPMLDENGGMTPTDVDRDLGVDIALRWGTGYDTTVRSFVNIIATPKGGTHVQGFEQGLLR 363

Query: 341 GIKK-YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RT 395
                       K +  I+ DD++     +++V + EP+F GQTK  L +   +    R 
Sbjct: 364 AFSAGLEGTRILKSSEEIVKDDVLEGMTAVVTVSLAEPQFEGQTKEVLGTPPVRRLVARI 423

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454
           VE+ +          +   A  L+E V+  S  R+  R  +    RK A+    LP KL 
Sbjct: 424 VEDKMTAFLTSAKAADKPVARALMEKVVNASRTRVAARAHKENQRRKNALESSHLPPKLK 483

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC  +    TELFIVEGDSA G+A  ARN  +QA+LP+RGKILNV  A    +  N +  
Sbjct: 484 DCRSSDPDVTELFIVEGDSALGTANVARNSEHQALLPIRGKILNVQKADLGAMLKNAECA 543

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++Q +G  +   +  +  RY KVI M DAD DGAHI  LL T F++ M  ++E   +F 
Sbjct: 544 SIIQVVGAGSGKTFDLDQARYGKVIFMADADSDGAHIRCLLATLFFRYMRPMVEAGRVFS 603

Query: 575 ISPPLFRI-----TQG-TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             PPL R       +G  K +Y + +   Q+   +  K G    E  R+KGLGEM ASQL
Sbjct: 604 AVPPLHRFELINPKRGMDKYLYTYTDAEYQRTAAQLAKKGVRFKEPQRYKGLGEMDASQL 663

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVGT 686
           KET MD   RTL R+ ++       + + +   LMG +   R +FI E A  +D   +  
Sbjct: 664 KETTMDPRHRTLRRITVDD----AAEAEGTFEILMGNEVAPRKQFIVEGAYRLDAEQIDA 719


>gi|261213260|ref|ZP_05927542.1| DNA gyrase subunit B [Vibrio sp. RC341]
 gi|262402079|ref|ZP_06078643.1| DNA gyrase subunit B [Vibrio sp. RC586]
 gi|260837534|gb|EEX64237.1| DNA gyrase subunit B [Vibrio sp. RC341]
 gi|262351725|gb|EEZ00857.1| DNA gyrase subunit B [Vibrio sp. RC586]
          Length = 805

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 232/574 (40%), Positives = 349/574 (60%), Gaps = 17/574 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGY   I V
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+++ +T+ R   I SQ +  G+P +PL        + GT + F P  + F + 
Sbjct: 121 SVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGDT-ERTGTTVRFWPSAQTFTNI 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V    S ++E  +K      + F + GG++ ++     N
Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLSDEREEDKK------DHFMYEGGIQAFVTHLNRN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  ++F    E++     +VE A+ W +     I  + N I   +GGTH +G R AL
Sbjct: 233 KTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGAL 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 351 ESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  DE+   +        G
Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMNQYQVALAMDG 564



 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G +             LE   K  +  + I R+KGLGEM   QL ET MD + R ++
Sbjct: 708 IKRGERVQPISS---FAAALEWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPDTRRMM 764

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +       +    LMG + + R  FI+  A  + ++ 
Sbjct: 765 QVTIEDAVG----ADELFTTLMGDQVEPRRAFIETNALKVANLD 804


>gi|315502965|ref|YP_004081852.1| DNA topoisomerase (ATP-hydrolyzing) [Micromonospora sp. L5]
 gi|315409584|gb|ADU07701.1| DNA topoisomerase (ATP-hydrolyzing) [Micromonospora sp. L5]
          Length = 704

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 225/681 (33%), Positives = 337/681 (49%), Gaps = 52/681 (7%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y A  +  LEGL+ VR RPGMYIG TD + + HL +E++DN+ DE +AG+A  ++V L  
Sbjct: 28  YGADDLTHLEGLDAVRKRPGMYIGSTDSRGVGHLVNEILDNSTDEGVAGHATKVDVILHA 87

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G + V D+GRGIP + H K    S +E++LT LHAGGKF  S Y+ SGGLHGVG S VN
Sbjct: 88  DGSVQVDDDGRGIPTDVHAK-SGISGVELVLTRLHAGGKFGGSGYKTSGGLHGVGASAVN 146

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR----------------NKRGTRI 207
           ALS    VTV R   + +  F  G+P                            + GT I
Sbjct: 147 ALSRRFDVTVRRGGKVHAMSFRHGVPGVFDGDGPDAPFTPGPGLQIVGAMKRGQRTGTSI 206

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            +  DP+ F   A  D   +    ++ A+L   V           E    P +E F+FP 
Sbjct: 207 RWWHDPRYFETGATLDTETVRLKLRNTAFLVPGVAYRLRD-----ETGEEPGEESFHFPD 261

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTE---------------KKGTHRGTVEWAIAWCEEN 312
           GL   ++          S       E                    R  VE A  W    
Sbjct: 262 GLTDMVEFLAPAGDRPVSGTLLVTGEGTYRENAADANGVMQSNVQRRAEVEVAFRWGTGY 321

Query: 313 PEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ---NKRAISIISDDLMISAVG 368
                 + NTI    GGTH  G   AL R +   A   +     +  +   DD++     
Sbjct: 322 ERTVECFTNTIRNAHGGTHRKGFERALARTLADAARNARGLLKPKEDAPTLDDVLEGMTA 381

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL--VQNPIEATKLLEWVIERS 426
           ++ V I EP+F  QTK +L +    + ++  +      +L   +   EA  +L+ +++ +
Sbjct: 382 VVHVRIPEPQFTSQTKDELSTAGITKVLQGLVEAHLKSWLEDRRTKAEARTVLQKIVDAA 441

Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
             RL +++Q++   RKTA+    +P KL DC       +ELFIVEGDSA G+++ AR+  
Sbjct: 442 RVRLTQKQQKDAARRKTALEGAAMPAKLVDCRATGVERSELFIVEGDSALGTSRMARSSE 501

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545
            QA+LP+RGKILNV  A  +++ +N +   +VQ LG  +   +    LRY +V+IM DAD
Sbjct: 502 YQALLPIRGKILNVQKANLQQVLDNAECAAIVQVLGAGSGRTFDLSALRYGRVLIMADAD 561

Query: 546 VDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT---QGTKSVYAHDEEHKQKILE 602
           VDGAHI +LL+T F + M  LIE   L+   PPL +IT   +  ++VY + +   +  + 
Sbjct: 562 VDGAHIRTLLITLFARYMRPLIEAGRLYAAMPPLHKITTKGRNPQTVYTYTQAEMEATVR 621

Query: 603 EFKKHGKGKIE-ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
           + +K GK  +  I RFKGLGEM A +L ET M+   R + R+ ++     ++  +  +  
Sbjct: 622 KLEKAGKQIVTPIPRFKGLGEMDADELWETTMNPATRAVRRITLDD----VEAAERILEL 677

Query: 662 LMGTKADERFKFIQERASFID 682
           LMG K + R  ++ + A  +D
Sbjct: 678 LMGEKVEPRRNWLIDSADRVD 698


>gi|320539857|ref|ZP_08039516.1| DNA gyrase, subunit B [Serratia symbiotica str. Tucson]
 gi|320030043|gb|EFW12063.1| DNA gyrase, subunit B [Serratia symbiotica str. Tucson]
          Length = 804

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 229/574 (39%), Positives = 351/574 (61%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ + I+V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDIQV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  AIHADNSVSVQDDGRGIPTGLHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L + + R+  +  Q +  G P +PL+   +  ++ GT + F P  + F + 
Sbjct: 121 SVVNALSEKLELVIRREGKVHEQTYGHGEPQAPLKVVGET-DQTGTMVRFWPSYQTFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       +   E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLKDKRTDRE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   +F   T K       VE A+ W +     I  + N I   +GGTH  G R A+
Sbjct: 233 KTPIHPNVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y E      K  IS   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNSYMEKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+  + LPGKLAD
Sbjct: 350 ETLMNEKLVDYLMENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLVGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE+ ++F+
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYVFI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   + L      G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYLISIAMDG 563



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            +++LE   K  +  + + R+KGLGEM   QL ET MD   R +LRV I   +       
Sbjct: 719 FEQVLEWLVKESRRGLSVQRYKGLGEMNPDQLWETTMDPESRRMLRVTIKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRVFIEENALKAANID 803


>gi|325577000|ref|ZP_08147571.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160958|gb|EGC73077.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 808

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 233/569 (40%), Positives = 346/569 (60%), Gaps = 19/569 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
                  + Y ASSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY
Sbjct: 2   SETPVTENAYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGY 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
            + I V++  +  ++V D+GRGIPV+ HP+    S  E+I+T LHAGGKFD+++Y++SGG
Sbjct: 62  CSDIIVTIHDDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALSD+L +T+ RQ  +  Q +  G P  PL    + +   GT + F P P
Sbjct: 121 LHGVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQGPLTVIGETQ-TTGTTVRFWPSP 179

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IF     FD   L K  +  ++L+  V       ++  E       + F++ GG++ ++
Sbjct: 180 EIFA-ITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGTE-------DHFHYEGGIQAFV 231

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHES 332
           +   +N++ I  + F    EK G     VE A+ W +  N  +  + N I   +GGTH +
Sbjct: 232 EYLNKNKNPIHPKPFYFSAEKDGI---GVEVALQWNDGVNENVYCFTNNIPQRDGGTHLA 288

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR +  Y E      K  +S   DD     V I+SV + +P+F+ QTK KLVS 
Sbjct: 289 GFRGALTRSLNNYMESEGLLKKEKVSTSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSS 348

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRL 449
           + +  VE+A+ +    YL++NP +A  ++  +I  +  R   RK R    RK A+    L
Sbjct: 349 EVKSAVESAMNERMQEYLLENPADAKIIVNQIITAARAREAARKAREMTRRKGALDIAGL 408

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +EL++VEGDSAGGSAK  R+R  QA+LPL+GKILNV  A  +K+ +
Sbjct: 409 PGKLADCQEKDPALSELYLVEGDSAGGSAKSGRDRKTQAILPLKGKILNVEKARFDKMLS 468

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE
Sbjct: 469 SQEVGTLITALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIE 528

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           + ++++  PPL+++ +G +  Y  D +  
Sbjct: 529 RGYVYIAQPPLYKVKKGKQERYIKDNDEM 557



 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 8/104 (7%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           +T+G K+         ++ +E   K  +  +EI R+KGLGEM A QL ET MD N R +L
Sbjct: 712 VTRGEKTQPVQS---FEQAVEWLMKESRRGLEIQRYKGLGEMNAEQLWETTMDPNARRML 768

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R +FI+  A    ++ 
Sbjct: 769 KVSIKDAV----AADQLFTTLMGDEVEPRREFIEMNALRA-NLD 807


>gi|301169283|emb|CBW28880.1| DNA gyrase, subunit B [Haemophilus influenzae 10810]
          Length = 806

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 234/578 (40%), Positives = 353/578 (61%), Gaps = 19/578 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           +++ +DNY ASSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   SETTNDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCS 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V D+GRGIPV+ HP+    S  E+I+T LHAGGKFD+++Y++SGGLH
Sbjct: 62  DIIVTIHDDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD+L +T+ RQ  +  Q +  G P SPL    +     GT + F P   I
Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGET-EATGTTVRFWPSSDI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     FD   L K  +  ++L+  V       ++ +E       + F++ GG++ +++ 
Sbjct: 180 FA-ITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE-------DHFHYEGGIQAFVEY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGL 334
             +N++ I  + F    EK G     VE A+ W +  N  +  + N I   +GGTH +G 
Sbjct: 232 LNKNKNPIHPKPFYFTAEKDGI---GVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGF 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y E      K  ++   DD     V I+SV + +P+F+ QTK KLVS + 
Sbjct: 289 RGALTRSLNSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEV 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451
           +  VE+A+ +    YL++NP +A  ++  +I  +  R   RK R    RK A+    LPG
Sbjct: 349 KSAVESAMNEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSAK  R+R  QA+LPL+GKILNV  A  +K+ ++Q
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQ 468

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ 
Sbjct: 469 EVGTLITALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++++  PPL+++ +G +  Y  D +  ++        G
Sbjct: 529 YVYIAQPPLYKVKKGKQERYIKDADEMEQYELTLALDG 566



 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 8/104 (7%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K          ++ +E   K  +  +E+ R+KGLGEM A QL ET MD N R +L
Sbjct: 710 VIRGEKVQPVRS---FEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRML 766

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R +FI+  A    ++ 
Sbjct: 767 KVSIKDAV----AADQLFTTLMGDEVEPRREFIELNALRA-NLD 805


>gi|261856340|ref|YP_003263623.1| DNA topoisomerase IV subunit beta [Halothiobacillus neapolitanus
           c2]
 gi|261836809|gb|ACX96576.1| DNA topoisomerase IV, B subunit [Halothiobacillus neapolitanus c2]
          Length = 638

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 247/654 (37%), Positives = 370/654 (56%), Gaps = 26/654 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            A+ + +  YDA +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE ++G+A
Sbjct: 1   MADSTNTQQYDARAIEVLTGLEPVRKRPGMY---TDTTRPNHLAQEVIDNSVDEAVSGFA 57

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I+V L  +G L+V D+GRG+PV+ HP+    + +E+ILT LHAGGKF + TY  SGGL
Sbjct: 58  SRIDVVLHADGSLSVTDDGRGMPVDIHPEH-GVTGVELILTRLHAGGKFSDKTYRFSGGL 116

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213
           HGVG+SVVNALS++L V + R   I+   F+ G P+  L +   V + + GTR+ F P  
Sbjct: 117 HGVGVSVVNALSEKLTVEIRRDGKIWQMAFADGAPVGELAEAGTVPKKQTGTRLHFWPRA 176

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
             F     F  +RLL + ++KA L   +   +  +           ++ ++F  GL  YL
Sbjct: 177 SYFDQP-KFLVSRLLHVLRAKAVLCPGLTVTFIDESSDEP------QKIWHFENGLCDYL 229

Query: 274 QTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTH 330
              LE R++I ++ F G    +       V+WA+ W EE  E    SY N I T +GGTH
Sbjct: 230 LGALEGRAIIPAQGFVGHMSAELAERPQMVDWALVWLEEGGEPLTESYVNLIPTPQGGTH 289

Query: 331 ESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            +GLR  LT  ++++ +      R + +  +D+      +LS  + EP+FAGQ K +L S
Sbjct: 290 VNGLRQGLTEAVREFCDFRNLVPRGVKLTPEDVFDRVAFVLSAKLSEPQFAGQMKERLSS 349

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
            ++   +   ++D    +L Q+P +   +    I+ ++ RL+    ++V RK       L
Sbjct: 350 RESASFIGGVIKDSLSLWLNQHPEQGEIIARIAIDAAQTRLKND--KKVARKRVTAGPAL 407

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC+ +    TELF+VEGDSAGGSAKQAR R  QA++PLRGKILN    G +++  
Sbjct: 408 PGKLADCTASDISRTELFLVEGDSAGGSAKQARERDFQAIMPLRGKILNTWETGVDQVLA 467

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           +Q++ D+  A+G    S      LRY KV I+ DAD DG HIA+LL   F +    L+  
Sbjct: 468 SQEVHDIAVAIGLEPGSDDL-SKLRYGKVCILADADSDGLHIATLLCALFLRHFTALVRA 526

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQL 628
            H+F+  PPL+RI  G ++ YA DE  +  IL  F     +GK +++RFKGLGEM  SQL
Sbjct: 527 GHVFVAMPPLYRIDLGKETFYALDEAERDGILGRFAAEHRRGKPQVTRFKGLGEMNPSQL 586

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFI 681
           +E+ +    R L+++ I  D          ++ L+  K A +R  +++ +    
Sbjct: 587 RESTLAPQTRRLVQLSITDDDPYA-----LMDMLLAKKRAADRRGWLEAKGDLA 635


>gi|227502246|ref|ZP_03932295.1| DNA gyrase subunit B [Corynebacterium accolens ATCC 49725]
 gi|227077070|gb|EEI15033.1| DNA gyrase subunit B [Corynebacterium accolens ATCC 49725]
          Length = 663

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 234/674 (34%), Positives = 359/674 (53%), Gaps = 64/674 (9%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIG T  + LHHL  E++DN++DE +AG+A+ + V L  +G + V+DNGRGIPVE H  
Sbjct: 1   MYIGSTGSRGLHHLIWEIVDNSVDEAMAGFADKVTVKLLEDGGVEVIDNGRGIPVEMH-- 58

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
                T+++++T LHAGGKFD+ +Y +SGGLHGVGISVVNALS  +   + R+   + Q 
Sbjct: 59  ASGAPTVQVVMTQLHAGGKFDSDSYAVSGGLHGVGISVVNALSTRVEAEIKREGKHWYQN 118

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           F   IP   +E         GT+I F  DP+IF     FD   + +  Q  A+L+  +  
Sbjct: 119 FQNAIPDDLVE--GGNARGTGTKIRFWADPEIFETT-EFDYDTIARRLQEMAFLNKGLTI 175

Query: 244 CWSCDKEIAEKYGIP--------------------------------------------E 259
               ++   E+  +                                             +
Sbjct: 176 ELIDERVTQEQIELEEIADAESGEASADETSFDDVPDAGDTFNEEADSKNVTKADKKRRK 235

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
           K  F++P GL  Y++   +++S I   I + + + +      VE A+ W +     + ++
Sbjct: 236 KITFHYPEGLTDYVKFLNKSKSAIHPTIVSFEAKGEDH---EVEVALQWNQGYKQSVHTF 292

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            NTI T EGGTHE G R ALT  + +YA+  +    +  ++  DD       ++SV + +
Sbjct: 293 ANTINTHEGGTHEEGFRAALTSLMNRYAKEHKLIKDKDGNLSGDDCREGLAAVISVKVGD 352

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F GQTKTKL + + +  V+ ++ +  + +   NP EA  ++   +  +  R+  RK R
Sbjct: 353 PQFEGQTKTKLGNSEIKGFVQRSVNEYVNDWFDANPAEAKAIINKAVSSAHARMAARKAR 412

Query: 437 EV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E+  RK+A     LPGKLADC       +EL+IVEGDSAGGSAK  R+   QA+LPLRGK
Sbjct: 413 EMVRRKSATDLGGLPGKLADCRSKDPRSSELYIVEGDSAGGSAKAGRDSMFQAILPLRGK 472

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLL 555
           ILNV  A  +K+  N ++  ++ ALG     ++  + LRY+K+++M DADVDG HIA+LL
Sbjct: 473 ILNVEKARMDKVLKNAEVQAIITALGTGIHEEFDIKKLRYDKIVLMADADVDGQHIATLL 532

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE- 613
           LT  ++ M  L+E  H++L +PPL+++     +  YA  ++ + K+L E  +  +   + 
Sbjct: 533 LTLLFRFMPQLVEDGHVYLANPPLYKLKWSKGTPGYAFSDDERDKLLAEGLEQNRKINKD 592

Query: 614 --ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERF 671
             I R+KGLGEM AS+L ET +D + R L RV    DL   +   +  + LMG     R 
Sbjct: 593 DGIQRYKGLGEMNASELWETTLDPSTRLLRRV----DLEDAQRADELFSILMGDDVAARR 648

Query: 672 KFIQERASFIDDVG 685
            FI  RA  +  + 
Sbjct: 649 SFITRRAKDVRFLD 662


>gi|71902107|ref|ZP_00684141.1| Gram negative topoisomerase IV, subunit B [Xylella fastidiosa
           Ann-1]
 gi|71728125|gb|EAO30322.1| Gram negative topoisomerase IV, subunit B [Xylella fastidiosa
           Ann-1]
          Length = 629

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 242/646 (37%), Positives = 365/646 (56%), Gaps = 26/646 (4%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y+A+ I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AGYAN IEV+L  
Sbjct: 5   YNAADIEVLTGLDPVKRRPGMY---TDTTRPNHLAQEVIDNSVDEALAGYANRIEVTLYK 61

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G   V DNGRG+PV+ HP+      +E+ILT LHAGGKF N  Y  SGGLHGVG+SVVN
Sbjct: 62  DGSCEVADNGRGMPVDIHPE-EKIPGVELILTRLHAGGKFSNRNYTFSGGLHGVGVSVVN 120

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222
           ALS ++ + + R+ +    +F  G  +S L+    V +   GTR+ F PD K F     F
Sbjct: 121 ALSSKVDLFIKREGSEHHMEFREGFAVSKLKVLGTVSKKNTGTRLRFWPDSKYFDTP-KF 179

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L  + ++KA L   +      +          E   ++F  GL+ YL+ ++    L
Sbjct: 180 NVRVLRHLLRAKAVLCPGLTVELLEE-------ATGEINTWHFKDGLRDYLKGEMTESEL 232

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRG 341
           + +E+F G  +K       V+WA+AW  E      SY N I T + GTH +GLR  LT  
Sbjct: 233 LPAELFIGCLKKDTE---VVDWAVAWVPEGELTQESYVNLIPTPQHGTHVNGLRSGLTDA 289

Query: 342 IKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
           ++++ +      R I +  +D+      +LS+ + +P+F+GQTK +L S  A   +E+ +
Sbjct: 290 LREFCDFRNLLPRGIKLAPEDVWDRVTFVLSLKMSDPQFSGQTKERLSSRQAAGFIESTV 349

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
            D F  +L QN      + +  IER+  RL+   +++V RK       LPGKLADC    
Sbjct: 350 HDAFSLWLNQNVDIGEHIAQIAIERASARLK--TEKQVTRKKITHGPALPGKLADCISLD 407

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              TELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN     S  +  + ++ +L  A+
Sbjct: 408 LSRTELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASDEVHNLAIAI 467

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           GC          LRY K++I+ DAD DG HIA+LL   F +    L+   H+F+  PPLF
Sbjct: 468 GCDPGKDNL-SGLRYGKIVILADADSDGLHIATLLTALFLKHFPGLVAAGHVFVAMPPLF 526

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           R+  G +  YA D+E K  +LE+ ++   KG+I ++RFKGLGEM   QL+E+ +  + R 
Sbjct: 527 RVDVGKQVFYAVDDEEKTILLEKIQREKIKGQISVTRFKGLGEMNPQQLRESTIHPDTRR 586

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           L+++ ++ +  +          L   +A++R ++++ + +    + 
Sbjct: 587 LVQLTMDDNTQTCSLMDML---LAKKRANDRKQWLETKGNLAS-LD 628


>gi|148827759|ref|YP_001292512.1| DNA gyrase subunit B [Haemophilus influenzae PittGG]
 gi|148719001|gb|ABR00129.1| DNA gyrase subunit B [Haemophilus influenzae PittGG]
          Length = 806

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 234/578 (40%), Positives = 353/578 (61%), Gaps = 19/578 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           +++ +DNY ASSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   SETTNDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCS 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V D+GRGIPV+ HP+    S  E+I+T LHAGGKFD+++Y++SGGLH
Sbjct: 62  DIIVTIHDDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD+L +T+ RQ  +  Q +  G P SPL    +     GT + F P   I
Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGET-EATGTTVRFWPSSDI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     FD   L K  +  ++L+  V       ++ +E       + F++ GG++ +++ 
Sbjct: 180 FA-ITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE-------DHFHYEGGIQAFVEY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGL 334
             +N++ I  + F    EK G     VE A+ W +  N  +  + N I   +GGTH +G 
Sbjct: 232 LNKNKNPIHPKPFYFTAEKDGI---GVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGF 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y E      K  ++   DD     V I+SV + +P+F+ QTK KLVS + 
Sbjct: 289 RGALTRSLNSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEV 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451
           +  VE+A+ +    YL++NP +A  ++  +I  +  R   RK R    RK A+    LPG
Sbjct: 349 KSAVESAMNEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSAK  R+R  QA+LPL+GKILNV  A  +K+ ++Q
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQ 468

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ 
Sbjct: 469 EVGTLITALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++++  PPL+++ +G +  Y  D +  ++        G
Sbjct: 529 YVYIAQPPLYKVKKGKQERYIKDADEMEQYELTLALDG 566



 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 8/104 (7%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K          ++ +E   K  +  +E+ R+KGLGEM A QL ET MD N R +L
Sbjct: 710 VIRGEKVQPVRS---FEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRML 766

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R +FI+  A    ++ 
Sbjct: 767 KVSIKDAV----AADQLFTTLMGDEVEPRREFIELNALRA-NLD 805


>gi|313818570|gb|EFS56284.1| DNA gyrase, B subunit [Propionibacterium acnes HL046PA2]
 gi|314959992|gb|EFT04094.1| DNA gyrase, B subunit [Propionibacterium acnes HL002PA2]
 gi|315085646|gb|EFT57622.1| DNA gyrase, B subunit [Propionibacterium acnes HL002PA3]
          Length = 719

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 235/720 (32%), Positives = 338/720 (46%), Gaps = 56/720 (7%)

Query: 18  GSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHL 77
            +S                  S S  Y A ++ +LEGLE VR RP MYIG TD + L H 
Sbjct: 5   STSSANSSETPRGKGDTVRTASTSREYGAKNLLVLEGLEAVRKRPAMYIGSTDTRGLMHC 64

Query: 78  FSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137
             E+ DN +DE +AGY   I V+L+  G + V D GRGIPV+  P+    S LE++ T L
Sbjct: 65  LWEIFDNGVDEALAGYGRRITVTLEKAGSILVTDEGRGIPVDVEPR-TGLSGLEVVYTKL 123

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP-------- 189
           HAGGKF    Y +SGGLHGVG SVVNA+S  L V V R++T++   F RG+P        
Sbjct: 124 HAGGKFGGGAYNVSGGLHGVGASVVNAVSVRLDVEVDRKSTVWGMSFRRGVPGDFEGEGP 183

Query: 190 -------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
                      +  +  R   GTR+ + PD +IF   A    ++L    +  A+L   ++
Sbjct: 184 DAPFTPGSGVRKVGKAKRGVTGTRVRYWPDRQIFLPDAKLSWSKLADRARQTAFLVPGLE 243

Query: 243 TCWSCDKEIAEKYGIPEK-----EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE---- 293
              + ++ I       +      E   F GG+  + +    ++ + +     G+T     
Sbjct: 244 IVITDERGIQTDPETGDVLETVSETMRFDGGISEFAEYLATDQPVNNVMRLQGETSFTET 303

Query: 294 ------------KKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340
                               V+ A+ W         S+ N I T +GGTH  G    L R
Sbjct: 304 VPMLDENGGMTPTDVDRDLGVDIALRWGTGYDTTVRSFVNIIATPKGGTHVQGFEQGLLR 363

Query: 341 GIKK-YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RT 395
                       K +  I+ DD++     +++V + EP+F GQTK  L +   +    R 
Sbjct: 364 AFSAGLEGTRILKSSEEIVKDDVLEGMTAVVTVSLAEPQFEGQTKEVLGTPPVRRLVARI 423

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454
           VE+ +          +   A  L+E V+  S  R+  R  +    RK A+    LP KL 
Sbjct: 424 VEDKMTAFLTSAKAADKPVARALMEKVVNASRTRVAARAHKENQRRKNALESSHLPPKLK 483

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC  +    TELFIVEGDSA G+A  ARN  +QA+LP+RGKILNV  A    +  N +  
Sbjct: 484 DCRSSDPDVTELFIVEGDSALGTANVARNSEHQALLPIRGKILNVQKADLGAMLKNAECA 543

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++Q +G  +   +  +  RY KVI M DAD DGAHI  LL T F++ M  ++E   +F 
Sbjct: 544 SIIQVVGAGSGKTFDLDQARYGKVIFMADADSDGAHIRCLLATLFFRYMRPMVEAGRVFS 603

Query: 575 ISPPLFRI-----TQG-TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             PPL R       +G  K +Y + +   Q+   +  K G    E  R+KGLGEM ASQL
Sbjct: 604 AVPPLHRFELINPKRGMDKYLYTYTDAEYQRTAAQLAKKGVRFKEPQRYKGLGEMDASQL 663

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVGT 686
           KET MD   RTL R+ ++       + + +   LMG +   R +FI E A  +D   +  
Sbjct: 664 KETTMDPRHRTLRRITVDD----AAEAEGTFEILMGNEVAPRKQFIVEGAYRLDAEQIDA 719


>gi|313764445|gb|EFS35809.1| DNA gyrase, B subunit [Propionibacterium acnes HL013PA1]
 gi|313792132|gb|EFS40233.1| DNA gyrase, B subunit [Propionibacterium acnes HL110PA1]
 gi|313801916|gb|EFS43150.1| DNA gyrase, B subunit [Propionibacterium acnes HL110PA2]
 gi|313807528|gb|EFS46015.1| DNA gyrase, B subunit [Propionibacterium acnes HL087PA2]
 gi|313815984|gb|EFS53698.1| DNA gyrase, B subunit [Propionibacterium acnes HL059PA1]
 gi|313820337|gb|EFS58051.1| DNA gyrase, B subunit [Propionibacterium acnes HL036PA1]
 gi|313822857|gb|EFS60571.1| DNA gyrase, B subunit [Propionibacterium acnes HL036PA2]
 gi|313825212|gb|EFS62926.1| DNA gyrase, B subunit [Propionibacterium acnes HL063PA1]
 gi|313827500|gb|EFS65214.1| DNA gyrase, B subunit [Propionibacterium acnes HL063PA2]
 gi|313838742|gb|EFS76456.1| DNA gyrase, B subunit [Propionibacterium acnes HL086PA1]
 gi|314915439|gb|EFS79270.1| DNA gyrase, B subunit [Propionibacterium acnes HL005PA4]
 gi|314918280|gb|EFS82111.1| DNA gyrase, B subunit [Propionibacterium acnes HL050PA1]
 gi|314920092|gb|EFS83923.1| DNA gyrase, B subunit [Propionibacterium acnes HL050PA3]
 gi|314925225|gb|EFS89056.1| DNA gyrase, B subunit [Propionibacterium acnes HL036PA3]
 gi|314931614|gb|EFS95445.1| DNA gyrase, B subunit [Propionibacterium acnes HL067PA1]
 gi|314955667|gb|EFT00069.1| DNA gyrase, B subunit [Propionibacterium acnes HL027PA1]
 gi|314958181|gb|EFT02284.1| DNA gyrase, B subunit [Propionibacterium acnes HL002PA1]
 gi|314962791|gb|EFT06891.1| DNA gyrase, B subunit [Propionibacterium acnes HL082PA1]
 gi|314967842|gb|EFT11941.1| DNA gyrase, B subunit [Propionibacterium acnes HL037PA1]
 gi|314978414|gb|EFT22508.1| DNA gyrase, B subunit [Propionibacterium acnes HL072PA2]
 gi|314988116|gb|EFT32207.1| DNA gyrase, B subunit [Propionibacterium acnes HL005PA2]
 gi|314989921|gb|EFT34012.1| DNA gyrase, B subunit [Propionibacterium acnes HL005PA3]
 gi|315078006|gb|EFT50057.1| DNA gyrase, B subunit [Propionibacterium acnes HL053PA2]
 gi|315080631|gb|EFT52607.1| DNA gyrase, B subunit [Propionibacterium acnes HL078PA1]
 gi|315084303|gb|EFT56279.1| DNA gyrase, B subunit [Propionibacterium acnes HL027PA2]
 gi|315088932|gb|EFT60908.1| DNA gyrase, B subunit [Propionibacterium acnes HL072PA1]
 gi|315098545|gb|EFT70521.1| DNA gyrase, B subunit [Propionibacterium acnes HL059PA2]
 gi|315101098|gb|EFT73074.1| DNA gyrase, B subunit [Propionibacterium acnes HL046PA1]
 gi|315105643|gb|EFT77619.1| DNA gyrase, B subunit [Propionibacterium acnes HL030PA1]
 gi|315108318|gb|EFT80294.1| DNA gyrase, B subunit [Propionibacterium acnes HL030PA2]
 gi|327330265|gb|EGE72014.1| DNA gyrase, B subunit [Propionibacterium acnes HL097PA1]
 gi|327331929|gb|EGE73666.1| DNA gyrase, B subunit [Propionibacterium acnes HL096PA3]
 gi|327443131|gb|EGE89785.1| DNA gyrase, B subunit [Propionibacterium acnes HL013PA2]
 gi|327450773|gb|EGE97427.1| DNA gyrase, B subunit, carboxyl terminus [Propionibacterium acnes
           HL087PA3]
 gi|327453150|gb|EGE99804.1| DNA gyrase, B subunit, carboxyl terminus [Propionibacterium acnes
           HL092PA1]
 gi|327453883|gb|EGF00538.1| DNA gyrase, B subunit [Propionibacterium acnes HL083PA2]
 gi|328753461|gb|EGF67077.1| DNA gyrase, B subunit [Propionibacterium acnes HL020PA1]
 gi|328754191|gb|EGF67807.1| DNA gyrase, B subunit [Propionibacterium acnes HL087PA1]
 gi|328754557|gb|EGF68173.1| DNA gyrase, B subunit [Propionibacterium acnes HL025PA2]
          Length = 719

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 235/720 (32%), Positives = 338/720 (46%), Gaps = 56/720 (7%)

Query: 18  GSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHL 77
            +S                  S S  Y A ++ +LEGLE VR RP MYIG TD + L H 
Sbjct: 5   STSSANSSETPRGKGDTVRTASTSREYGAKNLLVLEGLEAVRKRPAMYIGSTDTRGLMHC 64

Query: 78  FSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137
             E+ DN +DE +AGY   I V+L+  G + V D GRGIPV+  P+    S LE++ T L
Sbjct: 65  LWEIFDNGVDEALAGYGRRITVTLEKAGSILVTDEGRGIPVDVEPR-TGLSGLEVVYTKL 123

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP-------- 189
           HAGGKF    Y +SGGLHGVG SVVNA+S  L V V R++T++   F RG+P        
Sbjct: 124 HAGGKFGGGAYNVSGGLHGVGASVVNAVSVRLDVEVDRKSTVWGMSFRRGVPGVFEGEGP 183

Query: 190 -------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
                      +  +  R   GTR+ + PD +IF   A    ++L    +  A+L   ++
Sbjct: 184 DAPFTPGSGVRKVGKAKRGVTGTRVRYWPDRQIFLPDAKLSWSKLADRARQTAFLVPGLE 243

Query: 243 TCWSCDKEIAEKYGIPEK-----EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE---- 293
              + ++ I       +      E   F GG+  + +    ++ + +     G+T     
Sbjct: 244 IVITDERGIQTDPETGDVLETVSETMRFDGGISEFAEYLATDQPVNNVMRLQGETSFTET 303

Query: 294 ------------KKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340
                               V+ A+ W         S+ N I T +GGTH  G    L R
Sbjct: 304 VPMLDENGGMTPTDVDRDLGVDIALRWGTGYDTTVRSFVNIIATPKGGTHVQGFEQGLLR 363

Query: 341 GIKK-YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RT 395
                       K +  I+ DD++     +++V + EP+F GQTK  L +   +    R 
Sbjct: 364 AFSAGLEGTRILKSSEEIVKDDVLEGMTAVVTVSLAEPQFEGQTKEVLGTPPVRRLVARI 423

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454
           VE+ +          +   A  L+E V+  S  R+  R  +    RK A+    LP KL 
Sbjct: 424 VEDKMTAFLTSAKAADKPVARALMEKVVNASRTRVAARAHKENQRRKNALESSHLPPKLK 483

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC  +    TELFIVEGDSA G+A  ARN  +QA+LP+RGKILNV  A    +  N +  
Sbjct: 484 DCRSSDPDVTELFIVEGDSALGTANVARNSEHQALLPIRGKILNVQKADLGAMLKNAECA 543

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++Q +G  +   +  +  RY KVI M DAD DGAHI  LL T F++ M  ++E   +F 
Sbjct: 544 SIIQVVGAGSGKTFDLDQARYGKVIFMADADSDGAHIRCLLATLFFRYMRPMVEAGRVFS 603

Query: 575 ISPPLFRI-----TQG-TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             PPL R       +G  K +Y + +   Q+   +  K G    E  R+KGLGEM ASQL
Sbjct: 604 AVPPLHRFELINPKRGMDKYLYTYTDAEYQRTAAQLAKKGVRFKEPQRYKGLGEMDASQL 663

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVGT 686
           KET MD   RTL R+ ++       + + +   LMG +   R +FI E A  +D   +  
Sbjct: 664 KETTMDPRHRTLRRITVDD----AAEAEGTFEILMGNEVAPRKQFIVEGAYRLDAEQIDA 719


>gi|319775512|ref|YP_004138000.1| DNA gyrase subunit B [Haemophilus influenzae F3047]
 gi|319897917|ref|YP_004136114.1| DNA gyrase, subunit b [Haemophilus influenzae F3031]
 gi|329122446|ref|ZP_08251033.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Haemophilus
           aegyptius ATCC 11116]
 gi|317433423|emb|CBY81804.1| DNA gyrase, subunit B [Haemophilus influenzae F3031]
 gi|317450103|emb|CBY86317.1| DNA gyrase, subunit B [Haemophilus influenzae F3047]
 gi|327473728|gb|EGF19147.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Haemophilus
           aegyptius ATCC 11116]
          Length = 806

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 234/578 (40%), Positives = 353/578 (61%), Gaps = 19/578 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           +++ +DNY ASSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   SETTNDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCS 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V D+GRGIPV+ HP+    S  E+I+T LHAGGKFD+++Y++SGGLH
Sbjct: 62  DIIVTIHDDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD+L +T+ RQ  +  Q +  G P SPL    +     GT + F P   I
Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGET-EATGTTVRFWPSSDI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     FD   L K  +  ++L+  V       ++ +E       + F++ GG++ +++ 
Sbjct: 180 FA-ITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE-------DHFHYEGGIQAFVEY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGL 334
             +N++ I  + F    EK G     VE A+ W +  N  +  + N I   +GGTH +G 
Sbjct: 232 LNKNKNPIHPKPFYFTAEKDGI---GVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGF 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y E      K  ++   DD     V I+SV + +P+F+ QTK KLVS + 
Sbjct: 289 RGALTRSLNSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEV 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451
           +  VE+A+ +    YL++NP +A  ++  +I  +  R   RK R    RK A+    LPG
Sbjct: 349 KSAVESAMNEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSAK  R+R  QA+LPL+GKILNV  A  +K+ ++Q
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQ 468

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ 
Sbjct: 469 EVGTLITALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++++  PPL+++ +G +  Y  D +  ++        G
Sbjct: 529 YVYIAQPPLYKVKKGKQERYIKDADEMEQYELTLALDG 566



 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 8/104 (7%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K          ++++E   K  +  +E+ R+KGLGEM A QL ET MD N R +L
Sbjct: 710 VIRGEKVQPVRS---FEQVVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRML 766

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R +FI+  A    ++ 
Sbjct: 767 KVSIKDAV----AADQLFTTLMGDEVEPRREFIELNALRA-NLD 805


>gi|319786497|ref|YP_004145972.1| DNA topoisomerase IV subunit beta [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465009|gb|ADV26741.1| DNA topoisomerase IV, B subunit [Pseudoxanthomonas suwonensis 11-1]
          Length = 629

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 245/645 (37%), Positives = 363/645 (56%), Gaps = 25/645 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S  Y+A+ I +L GL+PV+ RPGMY   TD    +HL  EVIDNA+DE +AG+A  +EV+
Sbjct: 2   SSRYNAADIEVLSGLDPVKRRPGMY---TDTSRPNHLAQEVIDNAVDEALAGHARTVEVT 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +G   V D+GRG+PV+ HP+      +E+ILT LHAGGKF N  Y  SGGLHGVG+S
Sbjct: 59  LYRDGSCEVSDDGRGMPVDIHPE-EKIPGVELILTRLHAGGKFSNKNYTFSGGLHGVGVS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V + R        F  G   +PLE    V +   GTR+ F PDPK F   
Sbjct: 118 VVNALSTLVEVHIKRDGAEHRIAFRDGNRATPLEVVGTVGKKNTGTRVRFWPDPKYFDSP 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
              +   L  + ++KA L   +      +          E++ +++  GL+ YL+ +L  
Sbjct: 178 -KINVRALRHLLRAKAVLCPGLTVNLFDE-------ASGERDSWHYEDGLRDYLRNELAG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVAL 338
           R L+ +++F+G  +K+      V+WA+AW  E      SY N I T + GTH +GLR  L
Sbjct: 230 RELLPADLFSGALKKETE---VVDWAVAWIPEGELVQESYVNLIPTAQHGTHVNGLRTGL 286

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           T  ++++ +      R + +  +D+      +LS+ + +P+F+GQTK +L S  A   +E
Sbjct: 287 TDALREFCDFRNLLPRGVKLAPEDVWDRVAFVLSLKMTDPQFSGQTKERLSSRQAAGFIE 346

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
            A  D F  +L QN     K+ +  I+R+  RL+   +++V RK   +   LPGKLADC 
Sbjct: 347 GAAHDAFSLWLNQNVEMGEKIAQIAIDRASARLK--TEKQVTRKKVTQGPALPGKLADCI 404

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN     S  +  +Q++ DL 
Sbjct: 405 SQDLSRTELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASQEVHDLA 464

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+GC          LRY KV+I+ DAD DG HIA+LL   F +    L+   H+F+  P
Sbjct: 465 VAIGCDPGKDDL-TGLRYGKVVILADADSDGLHIATLLSALFLRHFPALVAAGHVFVAMP 523

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDAN 636
           PLFR+  G +  YA DEE K+ +LE+  +   KG++ ++RFKGLGEM   QL+E+ +  +
Sbjct: 524 PLFRVDVGKQVFYALDEEEKRLLLEKIAREKIKGQVSVTRFKGLGEMNPQQLRESTIHPD 583

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
            R L+++ ++    +          L   +A +R  +++ +    
Sbjct: 584 TRRLVQLTVDDGDQTHSLMDML---LAKKRASDRKAWLETKGDLA 625


>gi|302820792|ref|XP_002992062.1| hypothetical protein SELMODRAFT_162108 [Selaginella moellendorffii]
 gi|300140184|gb|EFJ06911.1| hypothetical protein SELMODRAFT_162108 [Selaginella moellendorffii]
          Length = 618

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 231/633 (36%), Positives = 354/633 (55%), Gaps = 27/633 (4%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIG T  + LHHL  EV+DNA+DEV AG+A  ++V L  +G +++ DNGRGIP + HP 
Sbjct: 1   MYIGSTGPRGLHHLIYEVLDNAIDEVQAGFATQVDVVLHSDGSVSITDNGRGIPTDVHP- 59

Query: 124 FPNKSTLEIILTTLHAGGKFDNST--YEISGGLHGVGISVVNALSDELHVTVARQNTIFS 181
              KSTLE +LT LHAGGKF      Y +SGGLHGVG+SVVNALS  L  TV R    + 
Sbjct: 60  ATGKSTLETVLTVLHAGGKFGGDESGYTVSGGLHGVGVSVVNALSKRLEATVWRNGQEYR 119

Query: 182 QKFSRGIPLSPLEKKE---KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLS 238
           Q F RG  +  L  +    +  ++ GT + F PD ++F     FD   +    +  A+L+
Sbjct: 120 QVFQRGKAVGSLTTRSLPRESSSRTGTCVKFLPDDEVFTTTTAFDPNIVSSRLREVAFLN 179

Query: 239 GRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH 298
             V      +    +       E F+F GGL  Y++   ++++ I   I     +   + 
Sbjct: 180 PEVTINLKEESATTD-------EVFHFGGGLVEYVEWLNQDKTKIHDPISFSVEKDDISV 232

Query: 299 RGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
             +++W       +  +  Y N+I T +GGTH  GL++ LTR +      ++   ++  +
Sbjct: 233 NVSMQWCS--DAYSDTLLGYANSIRTADGGTHLDGLKMGLTRTLNILGRRSKAIREKGDN 290

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           +  +        ++SV + EPEF GQTKT+L +++ ++ VE A+ +    YL   P    
Sbjct: 291 LSGEHAREGLTCVISVKVPEPEFEGQTKTRLGNVEVRKIVEQAVIEQVTEYLEFRPDTLE 350

Query: 417 KLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            +L   ++  +     +K RE V RK  ++   LPGKLADC+ +    +E+FIVEG+SAG
Sbjct: 351 AILSKALQAYKAAEAAKKARELVRRKNVLKTSTLPGKLADCTSSDPRVSEIFIVEGESAG 410

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LR 534
           GSAKQ R+R+ QA+LPL+GKILN+       I  NQ+I DL+ ALG  TR +   +D LR
Sbjct: 411 GSAKQGRDRAFQAILPLKGKILNIERKDDAAIYKNQEIQDLIVALGLGTRGEEFHKDTLR 470

Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDE 594
           Y K+II+TDADVDGAHI +LLLTFF++    L +  ++++  PPL+++ +G  + Y + E
Sbjct: 471 YHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDGGYIYVGVPPLYKVERGKHAHYCYSE 530

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
              Q +L  F  +      I RFKGLGEM+  QL +T +D +KR L ++ +   +    +
Sbjct: 531 NELQGLLGTFAANAP--YNIQRFKGLGEMMPLQLWDTTLDPSKRMLKKLTLEDAV----E 584

Query: 655 TQDSINKLMGTKADERFKFIQERASFID--DVG 685
              + ++LMG K + R + I + A+     ++ 
Sbjct: 585 ASFTFSRLMGDKVEPRKELILKSAAQFKQQNLD 617


>gi|301155295|emb|CBW14761.1| DNA gyrase, subunit B [Haemophilus parainfluenzae T3T1]
          Length = 808

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 233/569 (40%), Positives = 347/569 (60%), Gaps = 19/569 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
                  + Y ASSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY
Sbjct: 2   SETPVTENAYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGY 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
            + I V++  +  ++V D+GRGIPV+ HP+    S  E+I+T LHAGGKFD+++Y++SGG
Sbjct: 62  CSDIIVTIHDDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALSD+L +T+ RQ  ++ Q +  G P  PL    + +   GT + F P P
Sbjct: 121 LHGVGVSVVNALSDKLQLTIRRQGHVYEQFYHLGEPQGPLTIIGETQ-ATGTTVRFWPSP 179

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IF     FD   L K  +  ++L+  V       ++  E       + F++ GG++ ++
Sbjct: 180 EIFA-ITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGTE-------DHFHYEGGIQAFV 231

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHES 332
           +   +N++ I  + F    EK G     VE A+ W +  N  +  + N I   +GGTH +
Sbjct: 232 EYLNKNKNPIHPKPFYFSAEKDGI---GVEVALQWNDGVNENVYCFTNNIPQRDGGTHLA 288

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR +  Y E      K  +S   DD     V I+SV + +P+F+ QTK KLVS 
Sbjct: 289 GFRGALTRSLNNYMESEGLLKKEKVSTSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSS 348

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRL 449
           + +  VE+A+ +    YL++NP +A  ++  +I  +  R   RK R    RK A+    L
Sbjct: 349 EVKSAVESAMNERMQEYLLENPADAKIIVNQIITAARAREAARKAREMTRRKGALDIAGL 408

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +EL++VEGDSAGGSAK  R+R  QA+LPL+GKILNV  A  +K+ +
Sbjct: 409 PGKLADCQEKDPALSELYLVEGDSAGGSAKSGRDRKTQAILPLKGKILNVEKARFDKMLS 468

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE
Sbjct: 469 SQEVGTLITALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIE 528

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           + ++++  PPL+++ +G +  Y  D +  
Sbjct: 529 RGYVYIAQPPLYKVKKGKQERYIKDNDEM 557



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 17/130 (13%)

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615
           +T F Q++  L+E+   +        +T+G K+         ++ +E   K  +  +EI 
Sbjct: 695 ITAFGQQVNGLLEEG-AY--------VTRGEKTQPVQS---FEQAVEWLMKESRRGLEIQ 742

Query: 616 RFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675
           R+KGLGEM A QL ET MD N R +L+V I   +            LMG + + R +FI+
Sbjct: 743 RYKGLGEMNAEQLWETTMDPNARRMLKVSIKDAV----AADQLFTTLMGDEVEPRREFIE 798

Query: 676 ERASFIDDVG 685
             A    ++ 
Sbjct: 799 MNALRA-NLD 807


>gi|330447266|ref|ZP_08310916.1| DNA gyrase, B subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491457|dbj|GAA05413.1| DNA gyrase, B subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 805

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 228/574 (39%), Positives = 350/574 (60%), Gaps = 17/574 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I V
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCEDIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +G ++V D+GRGIP E H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDGSVSVSDDGRGIPTELHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+++ +T+ R   I  Q +  G+P +PL       ++ GTRI F P  + F + 
Sbjct: 121 SVVNALSEKVELTIKRGGHIHQQVYRHGVPDAPLAVIGDT-DETGTRIRFWPSEETFTNI 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V    + ++E        + + F + GG++ +++    N
Sbjct: 180 -EFQYEILAKRLRELSFLNSGVSIKLNDERE------EGKHDHFMYEGGIQAFVEHLNRN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  ++F   +E+      +VE A+ W +     I  + N I   +GGTH +G R AL
Sbjct: 233 KTPIHPKVFHFDSERDD--GISVEVAMQWNDGFQESIFCFTNNIPQRDGGTHLAGFRGAL 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+A+ +    +L++NP +A  +   +I+ S  R   RK R    RK A+    LPGKLAD
Sbjct: 351 ESAMNEKLAEFLLENPADAKTVCTKIIDASRAREAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ A+GC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ H+++
Sbjct: 471 LITAMGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +         
Sbjct: 531 AQPPLYKVKKGKQEQYIKDDEDMNQYQTTLALDN 564



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            +  LE   K  +  + + R+KGLGEM   QL ET MD   R +++V IN  +       
Sbjct: 720 FKDALEWLNKESRRGLSLQRYKGLGEMNPEQLWETTMDPESRRMMQVTINDAV----AAD 775

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           +    LMG + + R  FI+E A  + ++ 
Sbjct: 776 ELFTCLMGDQVEPRRNFIEENALKVANLD 804


>gi|145628949|ref|ZP_01784749.1| DNA gyrase subunit B [Haemophilus influenzae 22.1-21]
 gi|144979419|gb|EDJ89105.1| DNA gyrase subunit B [Haemophilus influenzae 22.1-21]
          Length = 806

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 234/578 (40%), Positives = 353/578 (61%), Gaps = 19/578 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           +++ +DNY ASSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   SETTNDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCS 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V D+GRGIPV+ HP+    S  E+I+T LHAGGKFD+++Y++SGGLH
Sbjct: 62  DIIVTIHDDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD+L +T+ RQ  +  Q +  G P SPL    +     GT + F P   I
Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGET-EATGTTVRFWPSSDI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     FD   L K  +  ++L+  V       ++ +E       + F++ GG++ +++ 
Sbjct: 180 FA-ITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE-------DHFHYEGGIQAFVEY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGL 334
             +N++ I  + F    EK G     VE A+ W +  N  +  + N I   +GGTH +G 
Sbjct: 232 LNKNKNPIHPKPFYFTAEKDGI---GVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGF 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y E      K  ++   DD     V I+SV + +P+F+ QTK KLVS + 
Sbjct: 289 RGALTRSLNSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEV 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451
           +  VE+A+ +    YL++NP +A  ++  +I  +  R   RK R    RK A+    LPG
Sbjct: 349 KSAVESAMNEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSAK  R+R  QA+LPL+GKILNV  A  +K+ ++Q
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQ 468

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ 
Sbjct: 469 EVGTLITALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++++  PPL+++ +G +  Y  D +  ++        G
Sbjct: 529 YVYIAQPPLYKVKKGKQERYIKDADEMEQYELTLALDG 566



 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 8/104 (7%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K          ++ +E   K  +  +E+ R+KGLGEM A QL ET MD N R +L
Sbjct: 710 VIRGEKVQPVRS---FEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRML 766

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R +FI+  A    ++ 
Sbjct: 767 KVSIKDAV----AADQLFTTLMGDEVEPRREFIELNALRA-NLD 805


>gi|145637927|ref|ZP_01793569.1| DNA gyrase subunit B [Haemophilus influenzae PittHH]
 gi|145268867|gb|EDK08828.1| DNA gyrase subunit B [Haemophilus influenzae PittHH]
          Length = 806

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 234/578 (40%), Positives = 352/578 (60%), Gaps = 19/578 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           +++ +DNY ASSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   SETTNDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCS 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V D+GRGIPV+ HP+    S  E+I+T LHAGGKFD+++Y++SGGLH
Sbjct: 62  DIIVTIHDDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD+L +T+ RQ  +  Q +  G P SPL    +     GT + F P   I
Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGET-EATGTTVRFWPSSDI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     FD   L K  +  ++L+  V       ++ +E         F++ GG++ +++ 
Sbjct: 180 FA-ITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSEN-------HFHYEGGIQAFVEY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGL 334
             +N++ I  + F    EK G     VE A+ W +  N  +  + N I   +GGTH +G 
Sbjct: 232 LNKNKNPIHPKPFYFTAEKDGI---GVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGF 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y E      K  ++   DD     V I+SV + +P+F+ QTK KLVS + 
Sbjct: 289 RGALTRSLNSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEV 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451
           +  VE+A+ +    YL++NP +A  ++  +I  +  R   RK R    RK A+    LPG
Sbjct: 349 KSAVESAMNEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSAK  R+R  QA+LPL+GKILNV  A  +K+ ++Q
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQ 468

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ 
Sbjct: 469 EVGTLITALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++++  PPL+++ +G +  Y  D +  ++        G
Sbjct: 529 YVYIAQPPLYKVKKGKQERYIKDADEMEQYELTLALDG 566



 Score =  130 bits (326), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 8/104 (7%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K          ++++E   K  +  +E+ R+KGLGEM A QL ET MD N R +L
Sbjct: 710 VIRGEKVQPVRS---FEQVVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRML 766

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R +FI+  A    ++ 
Sbjct: 767 KVSIKDAV----AADQLFTTLMGDEVEPRREFIELNALRA-NLD 805


>gi|39995114|ref|NP_951065.1| DNA gyrase subunit B [Geobacter sulfurreducens PCA]
 gi|39981876|gb|AAR33338.1| DNA gyrase, B subunit [Geobacter sulfurreducens PCA]
 gi|298504144|gb|ADI82867.1| DNA gyrase, B subunit [Geobacter sulfurreducens KN400]
          Length = 795

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 235/571 (41%), Positives = 348/571 (60%), Gaps = 17/571 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y A  I++LEGLE VR RP MYIG T  + LHHL  E++DN++DE +AGY N + V++ 
Sbjct: 8   DYGADKIKVLEGLEAVRKRPAMYIGSTAAQGLHHLVYEIVDNSIDEALAGYCNEVNVTIH 67

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G LTVVDNGRGIP + HP    K   E+ LT LHAGGKFDN++Y++SGGLHGVG+SVV
Sbjct: 68  LDGSLTVVDNGRGIPTDIHP-TEGKPAAEVALTVLHAGGKFDNTSYKVSGGLHGVGVSVV 126

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS +L + + R   ++ Q ++ G P +PLE   + +  RGT+ITF PD  IF     F
Sbjct: 127 NALSRKLELEIRRDGKVYRQSYACGDPQTPLEVMGETKK-RGTKITFLPDDTIFET-TEF 184

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L +  +  A+L+  V+   + ++E        +  +F++ GG+ ++++    NR+ 
Sbjct: 185 SFDVLSQRLRELAFLNAGVRITITDERE------EGKHHDFHYEGGIVSFVEYLNRNRTA 238

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +  +    K EK G     +E A+ + +    ++ S+ N I T EGGTH  G R ALTR 
Sbjct: 239 LHPKPIYFKGEKAGV---EMEVALQYNDSYDEKVFSFANNINTHEGGTHLVGFRAALTRT 295

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +  YA   +   K  ++I  +DL      ++SV I +P+F GQTKTKL + + +  VE+ 
Sbjct: 296 MNTYAAANELLKKEKVAISGEDLREGLTAVISVKIPQPQFEGQTKTKLGNSEVKGYVESL 355

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    +L +NP  A  ++   IE +  R   RK RE   RK A+    LPGKLADC +
Sbjct: 356 MNEKLAVFLEENPKIAKDIIGKSIEAARAREAARKARELTRRKGALDISNLPGKLADCQE 415

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++Q+I  L+ 
Sbjct: 416 RDPALCELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKMLSSQEIGTLIT 475

Query: 519 ALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
           ALG    +  +    LRY ++I+MTDADVDG+HI +LLLTFF+++M +++E+ HL++  P
Sbjct: 476 ALGTGIGKDDFDIAKLRYHRIIVMTDADVDGSHILTLLLTFFFRQMPEVVERGHLYIAQP 535

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           PL+++ +G K +Y  +E   Q  L E     
Sbjct: 536 PLYKVKRGRKELYLRNEAAMQAYLLEEGTED 566



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L  F    K  + I R+KGLGEM   QL ET M+   RTLL+V+I   +    +    
Sbjct: 712 DLLSFFMDSAKKGLSIQRYKGLGEMNPEQLWETTMEPVNRTLLQVKIEDAI----EADTI 767

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
              LMG + + R  FI++ A  + ++ 
Sbjct: 768 FTILMGDQVEPRRDFIEQNALNVSNLD 794


>gi|145635346|ref|ZP_01791048.1| DNA gyrase subunit B [Haemophilus influenzae PittAA]
 gi|145267352|gb|EDK07354.1| DNA gyrase subunit B [Haemophilus influenzae PittAA]
          Length = 806

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 234/578 (40%), Positives = 353/578 (61%), Gaps = 19/578 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           +++ +DNY ASSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   SETTNDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCS 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V D+GRGIPV+ HP+    S  E+I+T LHAGGKFD+++Y++SGGLH
Sbjct: 62  DIIVTIHDDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD+L +T+ RQ  +  Q +  G P SPL    +     GT + F P   I
Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGET-EATGTTVRFWPSSDI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     FD   L K  +  ++L+  V       ++ +E       + F++ GG++ +++ 
Sbjct: 180 FA-ITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE-------DHFHYEGGIQAFVEY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGL 334
             +N++ I  + F    EK G     VE A+ W +  N  +  + N I   +GGTH +G 
Sbjct: 232 LNKNKNPIHPKPFYFTAEKDGI---GVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGF 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y E      K  ++   DD     V I+SV + +P+F+ QTK KLVS + 
Sbjct: 289 RGALTRSLNSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEV 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451
           +  VE+A+ +    YL++NP +A  ++  +I  +  R   RK R    RK A+    LPG
Sbjct: 349 KSAVESAMNEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSAK  R+R  QA+LPL+GKILNV  A  +K+ ++Q
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQ 468

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ 
Sbjct: 469 EVGTLITALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++++  PPL+++ +G +  Y  D +  ++        G
Sbjct: 529 YVYIAQPPLYKVKKGKQERYIKDADEMEQYELTLALDG 566



 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 8/104 (7%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K     +    ++++E   K  +  +E+ R+KGLGEM A QL ET MD N R +L
Sbjct: 710 VIRGEKVQPVRN---FEQVVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRML 766

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R +FI+  A    ++ 
Sbjct: 767 KVSIKDAV----AADQLFTTLMGDEVEPRREFIELNALRA-NLD 805


>gi|145638524|ref|ZP_01794133.1| DNA gyrase subunit B [Haemophilus influenzae PittII]
 gi|145272119|gb|EDK12027.1| DNA gyrase subunit B [Haemophilus influenzae PittII]
 gi|309750028|gb|ADO80012.1| DNA gyrase subunit B [Haemophilus influenzae R2866]
          Length = 806

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 234/578 (40%), Positives = 353/578 (61%), Gaps = 19/578 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           +++ +DNY ASSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   SETTNDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCS 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V D+GRGIPV+ HP+    S  E+I+T LHAGGKFD+++Y++SGGLH
Sbjct: 62  DIIVTIHDDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD+L +T+ RQ  +  Q +  G P SPL    +     GT + F P   I
Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGET-EATGTTVRFWPSSDI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     FD   L K  +  ++L+  V       ++ +E       + F++ GG++ +++ 
Sbjct: 180 FA-ITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE-------DYFHYEGGIQAFVEY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGL 334
             +N++ I  + F    EK G     VE A+ W +  N  +  + N I   +GGTH +G 
Sbjct: 232 LNKNKNPIHPKPFYFTAEKDGI---GVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGF 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y E      K  ++   DD     V I+SV + +P+F+ QTK KLVS + 
Sbjct: 289 RGALTRSLNSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEV 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451
           +  VE+A+ +    YL++NP +A  ++  +I  +  R   RK R    RK A+    LPG
Sbjct: 349 KSAVESAMNEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSAK  R+R  QA+LPL+GKILNV  A  +K+ ++Q
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQ 468

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ 
Sbjct: 469 EVGTLITALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++++  PPL+++ +G +  Y  D +  ++        G
Sbjct: 529 YVYIAQPPLYKVKKGKQERYIKDADEMEQYELTLALDG 566



 Score =  130 bits (326), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 8/104 (7%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K          ++++E   K  +  +E+ R+KGLGEM A QL ET MD N R +L
Sbjct: 710 VIRGEKVQPVRS---FEQVVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRML 766

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R +FI+  A    ++ 
Sbjct: 767 KVSIKDAV----AADQLFTTLMGDEVEPRREFIELNALRA-NLD 805


>gi|68249167|ref|YP_248279.1| DNA gyrase subunit B [Haemophilus influenzae 86-028NP]
 gi|229845696|ref|ZP_04465819.1| DNA gyrase subunit B [Haemophilus influenzae 6P18H1]
 gi|68057366|gb|AAX87619.1| DNA gyrase subunit B [Haemophilus influenzae 86-028NP]
 gi|229811382|gb|EEP47088.1| DNA gyrase subunit B [Haemophilus influenzae 6P18H1]
          Length = 806

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 234/578 (40%), Positives = 353/578 (61%), Gaps = 19/578 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           +++ +DNY ASSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   SETTNDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCS 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V D+GRGIPV+ HP+    S  E+I+T LHAGGKFD+++Y++SGGLH
Sbjct: 62  DIIVTIHDDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD+L +T+ RQ  +  Q +  G P SPL    +     GT + F P   I
Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGET-EATGTTVRFWPSSDI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     FD   L K  +  ++L+  V       ++ +E       + F++ GG++ +++ 
Sbjct: 180 FA-ITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE-------DHFHYEGGIQAFVEY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGL 334
             +N++ I  + F    EK G     VE A+ W +  N  +  + N I   +GGTH +G 
Sbjct: 232 LNKNKNPIHPKPFYFTAEKDGI---GVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGF 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y E      K  ++   DD     V I+SV + +P+F+ QTK KLVS + 
Sbjct: 289 RGALTRSLNSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEV 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451
           +  VE+A+ +    YL++NP +A  ++  +I  +  R   RK R    RK A+    LPG
Sbjct: 349 KSAVESAMNEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSAK  R+R  QA+LPL+GKILNV  A  +K+ ++Q
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQ 468

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ 
Sbjct: 469 EVGTLITALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++++  PPL+++ +G +  Y  D +  ++        G
Sbjct: 529 YVYIAQPPLYKVKKGKQERYIKDADEMEQYELTLALDG 566



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 8/104 (7%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           +T+G K          ++ +E   K  +  +E+ R+KGLGEM A QL ET MD N R +L
Sbjct: 710 VTRGEKVQPVRS---FEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRML 766

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R +FI+  A    ++ 
Sbjct: 767 KVSIKDAV----AADQLFTTLMGDEVEPRREFIELNALRA-NLD 805


>gi|270264122|ref|ZP_06192389.1| DNA gyrase subunit B [Serratia odorifera 4Rx13]
 gi|270041771|gb|EFA14868.1| DNA gyrase subunit B [Serratia odorifera 4Rx13]
          Length = 804

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 226/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ + I+V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDIQV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            +  +  ++V D+GRGIP   H +    S  ++I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  VIHADNSVSVQDDGRGIPTGIHEE-EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L + + R+  +  Q ++ G P +PL+   +  ++ GT + F P  + F + 
Sbjct: 121 SVVNALSEKLELVIRREGKVHEQTYAMGEPQAPLKVVGET-DQTGTTVRFWPSYETFTNN 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       +   E       + F++ GG+K +++   +N
Sbjct: 180 VEFEYDILAKRLRELSFLNSGVSIRLKDKRTDKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   +F   T K       VE A+ W +     I  + N I   +GGTH  G R A+
Sbjct: 233 KTPIHPNVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  IS   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 350 ETLMNEKLVDYLMENPGDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+F+
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQIAIAMDG 563



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ LE   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEQALEWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|78221232|ref|YP_382979.1| DNA gyrase subunit B [Geobacter metallireducens GS-15]
 gi|78192487|gb|ABB30254.1| DNA gyrase subunit B [Geobacter metallireducens GS-15]
          Length = 795

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 238/572 (41%), Positives = 352/572 (61%), Gaps = 17/572 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           ++Y A  I++LEGLE VR RP MYIG T  + LHHL  E++DN++DE +AGY N + V++
Sbjct: 7   NDYGADKIKVLEGLEAVRKRPAMYIGSTASQGLHHLVYEIVDNSIDEALAGYCNEVNVTI 66

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G +TVVDNGRGIP E HP    K   E+ LT LHAGGKFDN++Y++SGGLHGVG+SV
Sbjct: 67  HLDGSITVVDNGRGIPTEMHP-TEGKPAAEVALTVLHAGGKFDNTSYKVSGGLHGVGVSV 125

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS +L + + R   +F Q ++ G PL+PLE   + +  RGTRITF PD  IF     
Sbjct: 126 VNALSKKLELGIRRDGKVFQQSYAYGAPLTPLEIVGETKK-RGTRITFLPDDTIFET-TE 183

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F    L +  +  A+L+  V+   S ++E        +  +F++ GG+ ++++    NR+
Sbjct: 184 FSFDILSQRLRELAFLNAGVRITISDERE------EGKHHDFHYEGGIVSFVEYLNRNRT 237

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
           ++  +    + E+ G     +E AI + +    ++ ++ N I T EGGTH  G R ALTR
Sbjct: 238 VLHPKPVYFRGERAGI---DMEIAIQYNDSYDEKVFTFANNINTHEGGTHLVGFRAALTR 294

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +  YA   +   K  +SI  +DL      ++SV I +P+F GQTKTKL + + +  VE+
Sbjct: 295 SMNSYAAANELTKKEKVSISGEDLREGLTAVISVKIPQPQFEGQTKTKLGNSEVKGFVES 354

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            + +    +L +NP  A  ++   IE +  R   RK RE   RK+A+    LPGKLADC 
Sbjct: 355 LMNEQLAVFLEENPKIAKDIIGKSIEAARAREAARKARELTRRKSALDISSLPGKLADCQ 414

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           +      EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++Q+I  L+
Sbjct: 415 ERDPALCELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKMLSSQEIGTLI 474

Query: 518 QALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
            ALG     +  +   LRY ++I+MTDADVDG+HI +LLLTFF+++M +++E+ HL++  
Sbjct: 475 TALGTSIGKEDFDVAKLRYHRIIVMTDADVDGSHILTLLLTFFFRQMPEVVERGHLYIAQ 534

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           PPL+++ +G K +Y  +E   Q  L E     
Sbjct: 535 PPLYKVKRGRKELYLRNEAAMQAYLLEEGTED 566



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L  F    K  + I R+KGLGEM   QL ET M+   RTLL+V+I   +    +    
Sbjct: 712 DLLSFFMDSAKKGLSIQRYKGLGEMNPDQLWETTMEPTNRTLLQVKIEDAI----EADTI 767

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
              LMG + + R  FI++ A  + ++ 
Sbjct: 768 FTILMGDQVEPRRDFIEKNALNVSNLD 794


>gi|190573692|ref|YP_001971537.1| DNA topoisomerase IV subunit B [Stenotrophomonas maltophilia K279a]
 gi|190011614|emb|CAQ45233.1| putative topoisomerase IV subunit B [Stenotrophomonas maltophilia
           K279a]
          Length = 629

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 244/642 (38%), Positives = 361/642 (56%), Gaps = 25/642 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y+A+ I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AG+A  IE++L  
Sbjct: 5   YNAADIEVLSGLDPVKRRPGMY---TDTARPNHLAQEVIDNSVDEALAGHARSIEITLYK 61

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G + V D+GRG+PV+ HP+      +E+ILT LHAGGKF N+ Y  SGGLHGVG+SVVN
Sbjct: 62  DGSVEVSDDGRGMPVDIHPE-EKIPGVELILTRLHAGGKFSNNNYTFSGGLHGVGVSVVN 120

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222
           ALS  + V + R+       F  G   +PLE    V +   GTR+ F PDPK F     F
Sbjct: 121 ALSTLVEVHIKREGAEHRITFRNGDRATPLEVVGSVGKKNTGTRVRFWPDPKYFDTP-KF 179

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L  + ++KA L   +    + +          E + +Y+  GL+ YL+ ++  R  
Sbjct: 180 AVRALKHLLRAKAVLCPGLTVKLTDE-------ATGEVDTWYYEDGLRDYLKLEMGERES 232

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRG 341
           + +++F G  +K       V+WA+AW  E      SY N I T + GTH +GLR  LT  
Sbjct: 233 LPADLFVGNLKKDTE---VVDWAVAWLPEGELVQESYVNLIPTAQHGTHVNGLRTGLTEA 289

Query: 342 IKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
           ++++ +      R + +  +D+      +LS+ + +P+F+GQTK +L S  A   VE A 
Sbjct: 290 LREFCDFRNLLPRGVKLAPEDVWDRVSFVLSLKMTDPQFSGQTKERLSSRQAAGFVEGAA 349

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
            D F   L QN     K+ +  IER+  RL+   ++ V RK   +   LPGKLADC    
Sbjct: 350 HDAFSLLLNQNVELGEKIAQIAIERASARLK--TEKLVVRKKVTQGPALPGKLADCISQD 407

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              TELF+VEGDSAGGSAKQAR++  QA++PLRGKILN     S  +  ++++ +L  A+
Sbjct: 408 LSRTELFLVEGDSAGGSAKQARDKDFQAIMPLRGKILNTWEVSSNSVLASEEVHNLAIAI 467

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           GC          LRY KVII+ DAD DG HIA+LL   F +    L++  H+F+  PPLF
Sbjct: 468 GCDPGKDDI-SGLRYGKVIILADADSDGLHIATLLTALFLKHFPALVDAGHVFVAMPPLF 526

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           RI  G +  YA DEE K+ +L++ ++   KG I ++RFKGLGEM   QL+E+ +  + R 
Sbjct: 527 RIDVGKQVFYALDEEEKRSMLDKIEREKIKGAINVTRFKGLGEMNPPQLRESTIHPDTRR 586

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           L+++ ++    +          L   +A +R  +++ +    
Sbjct: 587 LVQLTVDDREQTSSLMDML---LAKKRASDRKGWLESKGDLA 625


>gi|260581013|ref|ZP_05848836.1| DNA gyrase, B subunit [Haemophilus influenzae RdAW]
 gi|260092372|gb|EEW76312.1| DNA gyrase, B subunit [Haemophilus influenzae RdAW]
          Length = 806

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 234/578 (40%), Positives = 353/578 (61%), Gaps = 19/578 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           +++ +DNY ASSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   SETTNDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCS 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V D+GRGIPV+ HP+    S  E+I+T LHAGGKFD+++Y++SGGLH
Sbjct: 62  DIIVTIHDDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD+L +T+ RQ  +  Q +  G P SPL    +     GT + F P   I
Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGET-EATGTTVRFWPSSDI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     FD   L K  +  ++L+  V       ++ +E       + F++ GG++ +++ 
Sbjct: 180 FA-ITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE-------DHFHYEGGIQAFVEY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGL 334
             +N++ I  + F    EK G     VE A+ W +  N  +  + N I   +GGTH +G 
Sbjct: 232 LNKNKNPIHPKPFYFTAEKDGI---GVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGF 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y E      K  ++   DD     V I+SV + +P+F+ QTK KLVS + 
Sbjct: 289 RGALTRSLNSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEV 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451
           +  VE+A+ +    YL++NP +A  ++  +I  +  R   RK R    RK A+    LPG
Sbjct: 349 KSAVESAMNEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSAK  R+R  QA+LPL+GKILNV  A  +K+ ++Q
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQ 468

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ 
Sbjct: 469 EVGTLITALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++++  PPL+++ +G +  Y  D +  ++        G
Sbjct: 529 YVYIAQPPLYKVKKGKQERYIKDADEMEQYELTLALDG 566



 Score =  130 bits (327), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 8/104 (7%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K          ++ +E   K  +  +E+ R+KGLGEM A QL ET MD N R +L
Sbjct: 710 VIRGEKVQPVRS---FEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRML 766

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R +FI+  A    ++ 
Sbjct: 767 KVSIKDAV----AADQLFTTLMGDEVEPRREFIELNALRA-NLD 805


>gi|145633477|ref|ZP_01789206.1| DNA gyrase subunit B [Haemophilus influenzae 3655]
 gi|144985846|gb|EDJ92454.1| DNA gyrase subunit B [Haemophilus influenzae 3655]
          Length = 806

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 234/578 (40%), Positives = 353/578 (61%), Gaps = 19/578 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           +++ +DNY ASSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   SETTNDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCS 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V D+GRGIPV+ HP+    S  E+I+T LHAGGKFD+++Y++SGGLH
Sbjct: 62  DIIVTIHDDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD+L +T+ RQ  +  Q +  G P SPL    +     GT + F P   I
Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGET-EATGTTVRFWPSSDI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     FD   L K  +  ++L+  V       ++ +E       + F++ GG++ +++ 
Sbjct: 180 FA-ITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE-------DYFHYEGGIQAFVEY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGL 334
             +N++ I  + F    EK G     VE A+ W +  N  +  + N I   +GGTH +G 
Sbjct: 232 LNKNKNPIHPKPFYFTAEKDGI---GVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGF 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y E      K  ++   DD     V I+SV + +P+F+ QTK KLVS + 
Sbjct: 289 RGALTRSLNSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEV 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451
           +  VE+A+ +    YL++NP +A  ++  +I  +  R   RK R    RK A+    LPG
Sbjct: 349 KSAVESAMNEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSAK  R+R  QA+LPL+GKILNV  A  +K+ ++Q
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQ 468

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ 
Sbjct: 469 EVGTLITALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++++  PPL+++ +G +  Y  D +  ++        G
Sbjct: 529 YVYIAQPPLYKVKKGKQERYIKDADEMEQYELTLALDG 566



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 8/104 (7%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           +T+G K          ++ +E   K  +  +E+ R+KGLGEM A QL ET MD N R +L
Sbjct: 710 VTRGEKVQPVRS---FEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRML 766

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R +FI+  A    ++ 
Sbjct: 767 KVSIKDAV----AADQLFTTLMGDEVEPRREFIELNALRA-NLD 805


>gi|302866555|ref|YP_003835192.1| DNA topoisomerase [Micromonospora aurantiaca ATCC 27029]
 gi|302569414|gb|ADL45616.1| DNA topoisomerase (ATP-hydrolyzing) [Micromonospora aurantiaca ATCC
           27029]
          Length = 704

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 225/681 (33%), Positives = 337/681 (49%), Gaps = 52/681 (7%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y A  +  LEGL+ VR RPGMYIG TD + + HL +E++DN+ DE +AG+A  ++V L  
Sbjct: 28  YGADDLTHLEGLDAVRKRPGMYIGSTDSRGVGHLVNEILDNSTDEGVAGHATKVDVILHA 87

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G + V D+GRGIP + H K    S +E++LT LHAGGKF  S Y+ SGGLHGVG S VN
Sbjct: 88  DGSVQVDDDGRGIPTDVHAK-SGISGVELVLTRLHAGGKFGGSGYKTSGGLHGVGASAVN 146

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR----------------NKRGTRI 207
           ALS    VTV R   + +  F  G+P                            + GT I
Sbjct: 147 ALSRRFDVTVRRGGKVHAMSFRHGVPGVFDGDGPDAPFTPGPGLQIVGAMKRGQRTGTSI 206

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            +  DP+ F   A  D   +    ++ A+L   V           E    P +E F+FP 
Sbjct: 207 RWWHDPRYFETGAALDTEAVRLKLRNTAFLVPGVAYRLRD-----ETGEEPVEESFHFPD 261

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTE---------------KKGTHRGTVEWAIAWCEEN 312
           GL   ++          S       E                    R  VE A  W    
Sbjct: 262 GLTDMVEFLAPAGDRPVSGTLLVTGEGTYRENAADANGVMQSNVQRRAEVEVAFRWGTGY 321

Query: 313 PEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ---NKRAISIISDDLMISAVG 368
                 + NTI    GGTH  G   AL R +   A   +     +  +   DD++     
Sbjct: 322 ERTVECFTNTIRNAHGGTHRKGFERALARTLADAARNARGLLKPKEDAPTLDDVLEGMTA 381

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL--VQNPIEATKLLEWVIERS 426
           ++ V I EP+F  QTK +L +    + ++  +      +L   +   EA  +L+ +++ +
Sbjct: 382 VVHVRIPEPQFTSQTKDELSTAGITKVLQGLVEAHLKSWLEDRRTKAEARTVLQKIVDAA 441

Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
             RL +++Q++   RKTA+    +P KL DC       +ELFIVEGDSA G+++ AR+  
Sbjct: 442 RVRLTQKQQKDAARRKTALEGAAMPAKLVDCRATGVERSELFIVEGDSALGTSRMARSSE 501

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545
            QA+LP+RGKILNV  A  +++ +N +   +VQ LG  +   +    LRY +V+IM DAD
Sbjct: 502 YQALLPIRGKILNVQKANLQQVLDNAECAAIVQVLGAGSGRTFDLSALRYGRVLIMADAD 561

Query: 546 VDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT---QGTKSVYAHDEEHKQKILE 602
           VDGAHI +LL+T F + M  LIE   L+   PPL +IT   +  ++VY + +   +  + 
Sbjct: 562 VDGAHIRTLLITLFARYMRPLIEAGRLYAAMPPLHKITTKGRNPQTVYTYTQAEMEATVR 621

Query: 603 EFKKHGKGKIE-ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
           + +K GK  +  I RFKGLGEM A +L ET M+   R + R+ ++     ++  +  +  
Sbjct: 622 KLEKTGKQIVTPIPRFKGLGEMDADELWETTMNPATRAVRRITLDD----VEAAERILEL 677

Query: 662 LMGTKADERFKFIQERASFID 682
           LMG K + R  ++ + A  +D
Sbjct: 678 LMGEKVEPRRNWLIDSADRVD 698


>gi|325294445|ref|YP_004280959.1| DNA gyrase, B subunit [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325064893|gb|ADY72900.1| DNA gyrase, B subunit [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 804

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 231/571 (40%), Positives = 341/571 (59%), Gaps = 16/571 (2%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ YDAS+I++LEGLE VR RPGMYIG T    LHHL  E+IDN++DE +AGY   I+
Sbjct: 2   ANNEKYDASAIKVLEGLEAVRKRPGMYIGDTGSYGLHHLVFEIIDNSVDEALAGYCTEIK 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V +  +  +TV DNGRGIPV+ HP++  K   EI++T LHAGGKF+   Y+ SGGLHGVG
Sbjct: 62  VIIHEDNSITVEDNGRGIPVDIHPEY-GKPAAEIVMTVLHAGGKFEKKAYKYSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+ L + + +   ++ Q + +G P++      + +  RGT +TF+PDP+IF  
Sbjct: 121 VSVVNALSEWLKLEIHKDGKVYKQIYEKGNPVTEFACIGETKK-RGTIVTFKPDPEIFEV 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L    +  A+L+  +K     ++   +K      E FY+ GG+  +++   E
Sbjct: 180 T-EFSWDILANRLRELAFLNKGLKITLIDERTEPQKE-----ETFYYEGGIVEFVKKINE 233

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            +  +         EK       VE A+ +      ++ S+ N I T EGGTH SG R A
Sbjct: 234 KKDPLFPNPIYIAGEKDDIL---VEVALQYNSTYTEQVFSFVNNINTREGGTHVSGFRTA 290

Query: 338 LTRGIKKYAELTQ---NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           LTR I K+ E          IS+  DD+    V ++SV +  P+F GQTK KL + + + 
Sbjct: 291 LTRAIIKFIEENNLLPKNAKISVTGDDVREGLVTVISVKVPNPQFEGQTKAKLGNSEVRP 350

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            V + + D    +L + P    K+ E VI  +  R   ++ RE   RK+A+ +  LPGKL
Sbjct: 351 IVASIVYDKLYAFLTERPDIGRKIAEKVITAARAREAAKRARELTRRKSALEEFSLPGKL 410

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS+     TELF+VEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  EK+ +N +I
Sbjct: 411 ADCSERDPQKTELFLVEGDSAGGSAKQGRDRRFQAILPLKGKIINVEKARIEKVLSNDEI 470

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             ++ ALG      +    LRY K+IIMTDADVDGAHI +LLLTFF+++  +++E+ HL+
Sbjct: 471 KTIITALGTGIGKNFDMSKLRYSKIIIMTDADVDGAHIRTLLLTFFFRQFPEIVERGHLY 530

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           +  PPL+R+ +G + +Y   +   + ++ +F
Sbjct: 531 IAQPPLYRVKKGKREMYIKSDSELESVVLDF 561



 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/133 (30%), Positives = 62/133 (46%), Gaps = 9/133 (6%)

Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRI-TQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612
           LL++  Y+    L  +    L  PP +++ T+  +       E     L +  K G   I
Sbjct: 679 LLISDLYKHGRGLKSRIREKLGEPP-YKVETKKGEVKEFLTLEELYNYLLQVGKEG---I 734

Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
            I R+KGLGEM   QL ET M+   RTLL+V +   +       +    LMG K + R +
Sbjct: 735 YIQRYKGLGEMNPDQLWETTMNPENRTLLKVSVEDAVK----ADEIFTILMGDKVEPRKE 790

Query: 673 FIQERASFIDDVG 685
           FIQ+ A  + ++ 
Sbjct: 791 FIQKFAKEVRNLD 803


>gi|268593491|ref|ZP_06127712.1| DNA gyrase, B subunit [Providencia rettgeri DSM 1131]
 gi|291310913|gb|EFE51366.1| DNA gyrase, B subunit [Providencia rettgeri DSM 1131]
          Length = 804

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 225/574 (39%), Positives = 345/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+ YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ + I +
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGFCDDIVI 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSISVQDDGRGIPTGIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L + + R   +  Q +  G P  PL    +  ++ GTR+ F P    F   
Sbjct: 121 SVVNALSEKLELVIRRDGKVHEQIYKHGEPQGPLTVVGET-DQTGTRVRFWPSMDTFKGV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++    N
Sbjct: 180 TEFEYDVLAKRLRELSFLNSGVSIKLVDKRDGKE-------DHFHYEGGIKAFVEYLSRN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   +F   TEK G     VE ++ W +     +  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPSVFYFSTEKDGI---GVEVSMQWNDGFQENVYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y E      K  ++   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNNYMEKEGYQKKSKVNATGDDAREGLIAVISVKVPDPKFSSQTKEKLVSSEVKTAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 350 ETMMNEKLVEYLLENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+F+
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHIFI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D++     L      G
Sbjct: 530 AQPPLYKVKRGKQEQYIKDDDAMDDYLISIALDG 563



 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G +     D  + ++ L    +  +  + + R+KGLGEM   QL ET M+   R ++
Sbjct: 707 IKRGERRQ---DISNFEEALAWLTRESRRGLYVQRYKGLGEMNPEQLWETTMNPETRRMM 763

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           RV +   +     T      LMG   + R  FI+E A    ++ 
Sbjct: 764 RVTVKDAI----ATDLLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|229524916|ref|ZP_04414321.1| DNA gyrase subunit B [Vibrio cholerae bv. albensis VL426]
 gi|229338497|gb|EEO03514.1| DNA gyrase subunit B [Vibrio cholerae bv. albensis VL426]
          Length = 805

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 229/574 (39%), Positives = 349/574 (60%), Gaps = 17/574 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGY   I +
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVI 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+++ +T+ R   I +Q +  G+P +PL        + GT + F P  + F + 
Sbjct: 121 SVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDT-ERTGTTVRFWPSAQTFTNI 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V    + ++E  +K      + F + GG++ ++     N
Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEGGIQAFVTHLNRN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  ++F    E++     +VE A+ W +     I  + N I   +GGTH +G R AL
Sbjct: 233 KTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGAL 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 351 ESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  DE+   +        G
Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMNQYQVALAMDG 564



 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
               LE   K  +  + I R+KGLGEM   QL ET MD   R +++V I   +       
Sbjct: 720 FAAALEWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVG----AD 775

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           +    LMG + + R  FI+  A  + ++ 
Sbjct: 776 ELFTTLMGDQVEPRRAFIETNALKVANLD 804


>gi|323450751|gb|EGB06631.1| hypothetical protein AURANDRAFT_29093 [Aureococcus anophagefferens]
          Length = 698

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 246/694 (35%), Positives = 356/694 (51%), Gaps = 42/694 (6%)

Query: 22  KLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEV 81
              +S     +     ++ +  Y A  I +LEGLE VR RPGMYIG T  K LHHL  E+
Sbjct: 16  SAPRSSAATRTTTRLYEATTGAYGAGQITVLEGLEAVRKRPGMYIGSTGPKGLHHLCFEI 75

Query: 82  IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141
           +DN++DEV+AG+A  + V L  +G   V D+GRGIP + HP+   KS LE +L  LHAGG
Sbjct: 76  LDNSIDEVMAGHATKVAVELRADGSCAVGDDGRGIPCDLHPQ-TGKSALETVLCVLHAGG 134

Query: 142 KFDN--STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           KF    S Y +SGGLHGVG+SVVNALS +L V V R  ++ S  FSRG P   + + +  
Sbjct: 135 KFGGAESGYRVSGGLHGVGLSVVNALSHQLDVEVTRDGSVASMAFSRGTPTGDMTRVDAA 194

Query: 200 RN-KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI- 257
                GTR+ F PD  IF     FD   L       A+L+  V+   +  +E  +K    
Sbjct: 195 PGAATGTRVVFSPDGDIFEKTV-FDYDVLAARMDELAFLNAGVELSLTDFREPKKKKKKG 253

Query: 258 ---PEKEEFYFPGGLKTYLQTKLENRSLIS-------------SEIFTGKTEKKGTHRGT 301
              P  + F   GG+  Y       ++ +               E F  +  K G     
Sbjct: 254 DGGPRVDVFRHDGGISEYADFLTSEKTPLHAALGPSVTKGKHTKEAFVARGTKDGV-EVE 312

Query: 302 VEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--S 359
                +         S+ N I T +GGTH  GLR  + R +   A+ + + ++ +     
Sbjct: 313 CALRWSSDAYAEVTVSFANGIRTADGGTHVDGLRSVVARSVNAAAKRSPSGKSDNAYVPG 372

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           + +      +L V + EPEF GQTKT+L S   ++ V+  +          +P     ++
Sbjct: 373 EYVREGLTAVLLVNVPEPEFEGQTKTRLGSPGVRQVVDAVVGAALQQLFEWHPQALKAIV 432

Query: 420 EWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
           +  +   +     +  R++ R+ + +    LPGKLADCS   A  +E+FIVEGDSA GSA
Sbjct: 433 DKALAAQKAAGAAKAARDLVRRKSLLATTVLPGKLADCSLRDAALSEIFIVEGDSAAGSA 492

Query: 479 KQARNRSNQAVLP----LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR-SQYREEDL 533
           KQ R+R +QA+LP    LRGKILNV     E+I  N ++  L+ ALG   R  ++  ++L
Sbjct: 493 KQGRDRESQAILPLRAVLRGKILNVEKCAPERIYLNAELQALISALGLGVRGEEFNRDNL 552

Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHD 593
           RY +++IMTDADVDGAHI +L+LTFFY+    LIE  H+F+  PPL+++++G K  Y   
Sbjct: 553 RYHRIVIMTDADVDGAHIRALILTFFYRYQRSLIEDGHVFIACPPLYKVSRGRKDTYCWS 612

Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
           ++  +  L      G GK  I RFKGLGEM+ +QL  T MD   R + +V ++       
Sbjct: 613 DDDLEAALA-----GDGKATIQRFKGLGEMMPNQLWATTMDPTARKMQQVVVDD----AA 663

Query: 654 DTQDSINKLMGTKADERFKFIQER--ASFIDDVG 685
                I  LMG    ER ++I     A   +D+ 
Sbjct: 664 KADKVITLLMGDSVAERKEYIVANSVALDAEDLD 697


>gi|327395906|dbj|BAK13328.1| DNA gyrase subunit B GyrB [Pantoea ananatis AJ13355]
          Length = 802

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 226/576 (39%), Positives = 346/576 (60%), Gaps = 18/576 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L +T+ R+  +  Q +  G+P +PL       +  GTRI F P    F + 
Sbjct: 121 SVVNALSQKLELTIRREGKVHQQIYLHGVPEAPLAVTGDT-DATGTRIRFWPSHDTFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++          + F++ GG++ +++   +N
Sbjct: 180 TDFEYDILAKRLRELSFLNSGVSIRLEDKRDA-------RNDHFHYEGGIRAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   +F   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPTVFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLAEYLLENPGDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +E+++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+  +Q++  
Sbjct: 410 CQERDPALSEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
             PPL+++ +G +  Y  D+E   +        G  
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMLQYQIAIALDGTS 565



 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ ++  +K  +  + + R+KGLGEM   QL ET MD + R +LRV I   +       
Sbjct: 717 FEQAIDWLEKESRRGLSVQRYKGLGEMNPEQLWETTMDPDSRRMLRVTIKDAI----AAD 772

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 773 QLFTTLMGDAVEPRRAFIEENALKAANID 801


>gi|254524349|ref|ZP_05136404.1| DNA topoisomerase IV, B subunit [Stenotrophomonas sp. SKA14]
 gi|219721940|gb|EED40465.1| DNA topoisomerase IV, B subunit [Stenotrophomonas sp. SKA14]
          Length = 629

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 245/642 (38%), Positives = 361/642 (56%), Gaps = 25/642 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y+A+ I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AG+A  IE++L  
Sbjct: 5   YNAADIEVLSGLDPVKRRPGMY---TDTARPNHLAQEVIDNSVDEALAGHARSIEITLYK 61

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G + V D+GRG+PV+ HP+      +E+ILT LHAGGKF N+ Y  SGGLHGVG+SVVN
Sbjct: 62  DGSVEVSDDGRGMPVDIHPE-EKIPGVELILTRLHAGGKFSNNNYTFSGGLHGVGVSVVN 120

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222
           ALS  + V + R+       F  G   +PLE    V +   GTR+ F PDPK F     F
Sbjct: 121 ALSTLVEVHIKREGAEHRITFRNGDRATPLEVVGSVGKKNTGTRVRFWPDPKYFDTP-KF 179

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L  + ++KA L   +    + +          E + +Y+  GL+ YL+ +L  R  
Sbjct: 180 AVRALKHLLRAKAVLCPGLTVKLTDE-------ATGEVDTWYYEDGLRDYLKLELGERES 232

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRG 341
           + +++F G  +K       V+WA+AW  E      SY N I T + GTH +GLR  LT  
Sbjct: 233 LPADLFVGNLKKDTE---VVDWAVAWLPEGELVQESYVNLIPTAQHGTHVNGLRTGLTEA 289

Query: 342 IKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
           ++++ +      R + +  +D+      +LS+ + +P+F+GQTK +L S  A   VE A 
Sbjct: 290 LREFCDFRNLLPRGVKLAPEDVWDRVSFVLSLKMTDPQFSGQTKERLSSRQAAGFVEGAA 349

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
            D F   L QN     K+ +  IER+  RL+   ++ V RK   +   LPGKLADC    
Sbjct: 350 HDAFSLLLNQNVELGEKIAQIAIERASARLK--TEKLVVRKKVTQGPALPGKLADCISQD 407

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              TELF+VEGDSAGGSAKQAR++  QA++PLRGKILN     S  +  ++++ +L  A+
Sbjct: 408 LSRTELFLVEGDSAGGSAKQARDKDFQAIMPLRGKILNTWEVSSNSVLASEEVHNLAIAI 467

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           GC          LRY KVII+ DAD DG HIA+LL   F +    L++  H+F+  PPLF
Sbjct: 468 GCDPGKDDI-SGLRYGKVIILADADSDGLHIATLLTALFLKHFPALVDAGHVFVAMPPLF 526

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           RI  G +  YA DEE K+ +L++ ++   KG I ++RFKGLGEM   QL+E+ +  + R 
Sbjct: 527 RIDVGKQVFYALDEEEKRSMLDKIEREKIKGAINVTRFKGLGEMNPPQLRESTIHPDTRR 586

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           L+++ ++    +          L   +A +R  +++ +    
Sbjct: 587 LVQLTVDDGEQTRSLMDML---LAKKRASDRKGWLETKGDLA 625


>gi|329911523|ref|ZP_08275558.1| Topoisomerase IV subunit B [Oxalobacteraceae bacterium IMCC9480]
 gi|327545863|gb|EGF30975.1| Topoisomerase IV subunit B [Oxalobacteraceae bacterium IMCC9480]
          Length = 662

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 252/674 (37%), Positives = 363/674 (53%), Gaps = 42/674 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              ++A  +Y  SSIR+L+GLEPV+ RPGMY   T  +   H+  EVIDNA DE + GY 
Sbjct: 2   ATKKTAPSDYSESSIRVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYC 58

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST---YEIS 151
             I V+ + +G +TV D+GRGIPV  HP+     T+EI+ T LHAGGKFD  +   Y  S
Sbjct: 59  KHITVTQNADGSVTVDDDGRGIPVGIHPE-EGVPTVEIVFTRLHAGGKFDKGSGGAYAFS 117

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR--GTRITF 209
           GGLHGVG+SV NALS  L +TV R+  + S  F+ G  +  +  +   R+ +  GTR+T 
Sbjct: 118 GGLHGVGVSVTNALSTRLEITVWREGGVHSLAFASGDLIEKISTRPITRDDKKSGTRVTA 177

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PDPK F        + L ++ +SKA L   VK      K         E + + +  GL
Sbjct: 178 WPDPKYFDS-PAISQSELQRLLRSKAVLLPGVKVTLVNGK-------TGESQTWQYEQGL 229

Query: 270 KTYLQTKLENRSLISSEIFTGKTE----KKGTHRGTVE---WAIAWCEENP-EITSYCNT 321
           + YL   L   +     I   + E    K        E   W +AW E+      SY N 
Sbjct: 230 RGYLVECLAQATSSDPLIPLFEGEQYAGKDAEGFAEGEGAAWVVAWTEDGGVVRESYVNL 289

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFA 380
           I T  GGTHESGLR  L   +K +AE+     + + ++S+D+      +LS  + +P+F 
Sbjct: 290 IPTSAGGTHESGLREGLFGAVKSFAEMHSLLPKGVKLLSEDVFARVSFVLSAKVLDPQFQ 349

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQ K +L S DA + V   +R   + +L ++     KL + VI++++ RLR  ++ E  +
Sbjct: 350 GQIKERLNSRDAVKLVSTFVRPSLELWLSEHVEYGKKLADLVIKQAQSRLRSSQKVEKKK 409

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
            + +  L  PGKL DC  N     E+F+VEGDSAGGSAK  R++  QA+LPLRGK+LN  
Sbjct: 410 SSGVAVL--PGKLTDCESNDIKRNEIFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNAW 467

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLT 557
               +++  N +I D+  A+G     +    D   LRY ++ I++DADVDG+HI  LLLT
Sbjct: 468 ETERDRLFANNEIHDIAVAIGVDPHGKNDTPDLSNLRYGRICILSDADVDGSHIQVLLLT 527

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--K 609
            F++    LI+  H+ +  PPLFR+    +G K    +YA D      I ++ +K G  +
Sbjct: 528 LFFKHFPKLIDHGHICIARPPLFRVDAPARGKKPAQKIYALDSGELVAIEDKLRKDGVKE 587

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KAD 668
           G   ISRFKGLGEM A QL ET M+ + R LL V        L  +++  N LMG  +A 
Sbjct: 588 GAWSISRFKGLGEMNAEQLWETTMNPDTRRLLPVAF--GEFDLVSSEERFNMLMGKGEAA 645

Query: 669 ERFKFIQERASFID 682
            R  +I+E  +  +
Sbjct: 646 ARRAWIEEHGNEAE 659


>gi|225351335|ref|ZP_03742358.1| hypothetical protein BIFPSEUDO_02928 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157679|gb|EEG70962.1| hypothetical protein BIFPSEUDO_02928 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 776

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 251/757 (33%), Positives = 350/757 (46%), Gaps = 121/757 (15%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           DNY A S+ +LEGL+ VR RPGMYIG TD + L H   E+IDN++DE +AG  N I V+L
Sbjct: 19  DNYGAGSLTVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNSVDEALAGVCNHIVVTL 78

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G + V DNGRGIPV+  PK    + +E++LT LHAG KF NS+Y  SGGLHGVG SV
Sbjct: 79  HSDGSVEVADNGRGIPVDIEPK-TKLTGVEVVLTKLHAGAKFGNSSYGASGGLHGVGSSV 137

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPL------------------------SPLEKKE 197
           VNALS  L V V R        F +G P                         + LE   
Sbjct: 138 VNALSSRLDVEVDRDGKTHHMSFHQGHPGVYTDADPEHPSPDAPFKRTRKNRPTELEIIG 197

Query: 198 KVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK-------TCWSCDK 249
           KV     GTRI +  DP+IF D A F   +L+   +  ++L   +K          + D+
Sbjct: 198 KVSPKTTGTRIRYWADPEIFNDTAEFSYEQLIDRVRQTSFLVPGLKITVIDENIPETGDE 257

Query: 250 EIAE--------------------------------------------------KYGIPE 259
            + E                                                  KY    
Sbjct: 258 SVDEMLEVDDIANAAGDEPQEIAESDESEHDAAGHEEAAEQIEEADVAAQPQGSKYTHSR 317

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTVE 303
            EEF   GG+K ++    +  ++ +    TG+                  +K T    V+
Sbjct: 318 IEEFCHTGGVKDFVDYLSKGEAVSAIWRITGEDTYVEETQAVGDGGELHAQKVTRNCAVD 377

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDL 362
            A+ W       + S+ N + T  GGTH  G  + LT+ I+K  E    K  +++   ++
Sbjct: 378 IAMRWTNGYDTTMRSFVNVVETPGGGTHVDGYLLGLTKQIRKAIEDNARKLKVNLKDSNM 437

Query: 363 M-------ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415
                      V +++V I EP+F GQTK  L +   +  V       F   +  +    
Sbjct: 438 KVERDDILAGLVAVVTVRIAEPQFQGQTKDVLGTAQVKPIVSKMTDRQFGEMITGSKRGY 497

Query: 416 TKL----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
            +     LE ++     R++ RK +E   RK A+    +P KL+DC        ELFIVE
Sbjct: 498 KEQSGRVLEKIVGEMHARIQARKTKEVTRRKNALESASMPPKLSDCQPGNDDVAELFIVE 557

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530
           GDSA G+AK ARN   QA+LP+RGKILNV  A   ++ +N++   ++Q +G  + + +  
Sbjct: 558 GDSALGTAKAARNSGFQALLPIRGKILNVQKASLSQMLSNKECAAIIQVVGAGSGASFDI 617

Query: 531 EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI----TQGT 586
           E  RY KVI+MTDADVDGAHI  LLLT FY  M  LIE  H++   PPL RI        
Sbjct: 618 EQARYNKVIMMTDADVDGAHIRILLLTLFYCYMRPLIEYGHVYAAVPPLHRIALTGAHKG 677

Query: 587 KSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645
           + +Y + ++     L +  KKH     +I R+KGLGEM A QL +T MD   R L R+ +
Sbjct: 678 EYIYTYSDDELAGKLADLDKKHISYNEDIQRYKGLGEMDADQLADTTMDPRTRMLRRIRM 737

Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
                  +      + LMG     R  FI E A   D
Sbjct: 738 ED----AEQASQIFSLLMGDDVPPRKAFIVENADDFD 770


>gi|239982746|ref|ZP_04705270.1| DNA topoisomerase IV subunit B [Streptomyces albus J1074]
 gi|291454594|ref|ZP_06593984.1| DNA topoisomerase IV subunit B [Streptomyces albus J1074]
 gi|291357543|gb|EFE84445.1| DNA topoisomerase IV subunit B [Streptomyces albus J1074]
          Length = 707

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 244/706 (34%), Positives = 349/706 (49%), Gaps = 52/706 (7%)

Query: 23  LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82
             ++     +          NY A  + +LEGLE VR RPGMYIG TD + L H   E+I
Sbjct: 2   TAETSVPSTALLAGADQDGSNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEII 61

Query: 83  DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142
           DN++DE + GY + IEV L  +G + V DNGRGIPV+  PK    S +E++LT LHAGGK
Sbjct: 62  DNSVDEALGGYCDHIEVILHDDGSVEVRDNGRGIPVDVEPK-TGLSGVEVVLTKLHAGGK 120

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------- 189
           F   +Y  SGGLHGVG SVVNALS  L + V R     +  F RG+P             
Sbjct: 121 FGGGSYAASGGLHGVGASVVNALSARLDIEVDRGGATHAISFRRGVPGAFAKTGVDAPFE 180

Query: 190 --LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247
                 + K+  + + GTR+ +  D +IF   A  D A L +  +  A+L   +      
Sbjct: 181 AASGLRKVKKVAKARTGTRVRYWADRQIFLKDAKLDLATLHQRARQTAFLVPGLTLVVRD 240

Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-------------- 293
           +  + +     E E F F GG+  + +   ++R+L      +GK                
Sbjct: 241 EYGLGDGGSKGE-ESFRFDGGISEFCEYLADDRALCDVLRLSGKGTFKETVPVLDDFGQM 299

Query: 294 --KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
              + T    V+ A+ W      +I S+ N I T +GGTH +G   +LTR + +     +
Sbjct: 300 TPTEVTRELGVDIALRWGTGYDTKIRSFVNIIATPKGGTHVTGFERSLTRTMNEVLRSAK 359

Query: 351 NKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
             R        DD +     +++V + EP+F GQTK  L +  A R V   +      +L
Sbjct: 360 LLRVAEDDIVKDDALEGLTAVVTVRLAEPQFEGQTKEVLGTSAANRIVSQVVAKELKAFL 419

Query: 409 VQNPIEATKLLEWVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHG 463
                +A      V+E+           R+ +    RKTA+    LP KLADC  +    
Sbjct: 420 TSTKRDAKAQARAVMEKAVAAARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDDVER 479

Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523
           +ELFIVEGDSA G+AK ARN   QA+LP+RGKILNV  +    +  N +   ++Q +G  
Sbjct: 480 SELFIVEGDSALGTAKLARNSEFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVIGAG 539

Query: 524 TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI- 582
           +   +  +  RY K+I++ DADVDGAHI  LLLT F + M  ++E   +F   PPL RI 
Sbjct: 540 SGRTFDLDAARYGKIILLVDADVDGAHIRCLLLTLFQRYMRPMVESGRVFAAVPPLHRIE 599

Query: 583 ----TQGT-KSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
                +G  K VY + +   +  L EF +K+ + K  I R+KGLGEM A QL ET MD  
Sbjct: 600 LVQPKRGQDKYVYTYSDRELRDTLMEFQRKNVRYKDSIQRYKGLGEMDADQLAETTMDPR 659

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            RTL R+ I      L  ++   + LMG +   R +FI   A+ +D
Sbjct: 660 HRTLRRINI----ADLDSSEHVFDLLMGNEVAPRKEFITSSAATLD 701


>gi|281356695|ref|ZP_06243186.1| DNA gyrase, B subunit [Victivallis vadensis ATCC BAA-548]
 gi|281316822|gb|EFB00845.1| DNA gyrase, B subunit [Victivallis vadensis ATCC BAA-548]
          Length = 824

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 232/593 (39%), Positives = 350/593 (59%), Gaps = 16/593 (2%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
             ++  Y AS I +LEGLE VR+RP MYIG T ++ LHHL  EV+DN++DE +AGYA+ I
Sbjct: 9   TGSASEYSASKITVLEGLEAVRVRPSMYIGDTGQRGLHHLVYEVVDNSIDEALAGYASHI 68

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           EV++  +  ++V D+GRGIPV+ H +  +K  +E++LT LHAGGKFD+++Y++SGGLHGV
Sbjct: 69  EVTIHSDNSISVEDDGRGIPVDMH-EGEHKPAVEVVLTILHAGGKFDHNSYKVSGGLHGV 127

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+S VNALSD L   V R +  ++ +F RG+ + PL +       RGTR++F+PD  IF 
Sbjct: 128 GVSCVNALSDWLVAEVYRNSKAYTIRFERGVTVDPLRELGPTTK-RGTRVSFKPDGTIFP 186

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           D   +    L K  +  A+L+  ++   + ++   E       E F++ GG++ ++    
Sbjct: 187 DTV-YVWDILAKRLRELAFLNSGIRITLTDERL-EEGQTAGRSETFHYEGGIREFVSMLN 244

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N+++I+ ++     E+ G     VE A+ + +     I SY N I T EGG+H +G + 
Sbjct: 245 VNKTVINPDVIYFHRERNGI---DVEVAMQYNDGTAENIYSYANNINTIEGGSHLTGFQT 301

Query: 337 ALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           ALTR I  Y + T  K    +   D+      ++SV + +P+F GQTKTKL + + +  V
Sbjct: 302 ALTRTINNYTK-TMMKNDTPLSGTDVREGLSAVISVKVPDPQFEGQTKTKLGNSEVRGIV 360

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLAD 455
           E+ + D    YL ++P  A  +    +  S  R   RK RE   RK A+  + LPGKLAD
Sbjct: 361 ESVINDELGAYLEEHPKIAENIGNNAMLASRAREAARKARETVRRKGALEGIGLPGKLAD 420

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS       EL+IVEGDSAGGSAK  R+   QA+LP+RGK+LNV     +K+  N++I  
Sbjct: 421 CSNRDPSMCELYIVEGDSAGGSAKSGRDSGFQAILPIRGKLLNVEKVRFDKVLENKEIQS 480

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           L+ A+GC    ++     RY +V+IMTDADVDG+HI +LLLTFF+++M  LIE  ++++ 
Sbjct: 481 LIYAIGCGIAEEFDVSKARYHRVVIMTDADVDGSHIRTLLLTFFFRQMKPLIEAGYVYIA 540

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE-MLASQ 627
            PPLF++T+G K  Y   E+     L    +     + +    G GE +   Q
Sbjct: 541 KPPLFKVTKGRKEQYIDTEDQLDSYLVRLGEED---LTVK--NGDGELLTPEQ 588



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 51/89 (57%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            +++ +  +++G+  + I R+KGLGEM A QL ET MD   RT+++V +   +    +  
Sbjct: 739 LEELFKLVRQNGQAGLRIQRYKGLGEMNAEQLWETTMDPATRTMIKVRMEDAV----EAD 794

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
              N LMG   + R ++I++ A+ + D+ 
Sbjct: 795 QIFNLLMGDVVEPRREYIEKHAAGVKDLD 823


>gi|260582729|ref|ZP_05850516.1| DNA gyrase, B subunit [Haemophilus influenzae NT127]
 gi|260094179|gb|EEW78080.1| DNA gyrase, B subunit [Haemophilus influenzae NT127]
          Length = 806

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 233/578 (40%), Positives = 353/578 (61%), Gaps = 19/578 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           +++ +DNY A+SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   SETTNDNYGAASIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCS 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V D+GRGIPV+ HP+    S  E+I+T LHAGGKFD+++Y++SGGLH
Sbjct: 62  DIIVTIHDDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD+L +T+ RQ  +  Q +  G P SPL    +     GT + F P   I
Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGET-EATGTTVRFWPSSDI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     FD   L K  +  ++L+  V       ++ +E       + F++ GG++ +++ 
Sbjct: 180 FA-ITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE-------DHFHYEGGIQAFVEY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGL 334
             +N++ I  + F    EK G     VE A+ W +  N  +  + N I   +GGTH +G 
Sbjct: 232 LNKNKNPIHPKPFYFTAEKDGI---GVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGF 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y E      K  ++   DD     V I+SV + +P+F+ QTK KLVS + 
Sbjct: 289 RGALTRSLNSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEV 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451
           +  VE+A+ +    YL++NP +A  ++  +I  +  R   RK R    RK A+    LPG
Sbjct: 349 KSAVESAMNEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSAK  R+R  QA+LPL+GKILNV  A  +K+ ++Q
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQ 468

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ 
Sbjct: 469 EVGTLITALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++++  PPL+++ +G +  Y  D +  ++        G
Sbjct: 529 YVYIAQPPLYKVKKGKQERYIKDADEMEQYELTLALDG 566



 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 8/104 (7%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K          ++ +E   K  +  +E+ R+KGLGEM A QL ET MD N R +L
Sbjct: 710 VIRGEKVQPVRS---FEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRML 766

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R +FI+  A    ++ 
Sbjct: 767 KVSIKDAV----AADQLFTTLMGDEVEPRREFIELNALRA-NLD 805


>gi|309378433|emb|CBX22928.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 661

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 243/672 (36%), Positives = 353/672 (52%), Gaps = 38/672 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ Y  SSI +L+GLEPV+ RPGMY   T   +  H+  EVIDNA DE + G+A  I+
Sbjct: 2   AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATEID 58

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154
           V +  +G L+V DNGRGIPV  HP+      +E++ T LHAGGKF+       Y  SGGL
Sbjct: 59  VQIHEDGSLSVRDNGRGIPVGLHPE-EGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213
           HGVG+SV NALS  L VTV R+  I    F+ G  + PL +  K      GT +   PD 
Sbjct: 118 HGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRVWPDG 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     +  + L ++  +KA L   V+   +      +       + +++P GLK+YL
Sbjct: 178 KYFESPN-YSISELERLLCAKAVLLPGVRVSLT---RPVKGEDEARTQTWHYPDGLKSYL 233

Query: 274 QTKLENRS-----LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEG 327
              + +              +       +      +A+ W EE      SY N I T  G
Sbjct: 234 TDLIADAQEAVPLFSCENYISDDHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293

Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           GTHE+GL+ A+   +  +  L     R + + SDD+      +LS  + +P+F GQTK K
Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRGVKVQSDDVFGKTAFVLSARVLDPQFQGQTKDK 353

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L + DA + V     DP + +L QN     K+ E  I +++ R+R    +++ +K     
Sbjct: 354 LTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSV--KKIEKKKGSGV 411

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKL DC        ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN      ++
Sbjct: 412 AVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +  N +I D+  A+G          D   LRY K+ I++DADVDG+HI  LLLT FY+  
Sbjct: 472 LFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531

Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614
             L+   H+++  PPLFR+    QG     +  YA D+     ILE  +K G  +    I
Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDGILERLQKEGVKETAYSI 591

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673
           SRFKGLGEM   QLK+T M  + R LL+V+I++  +   +T+D   KLMG  +A  R  +
Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQISEGADD--ETRDIFVKLMGKGEAAARRAW 649

Query: 674 IQERASFIDDVG 685
           ++      + + 
Sbjct: 650 MEREGDTAE-LD 660


>gi|312601000|gb|ADQ90255.1| Topoisomerase IV subunit B [Mycoplasma hyopneumoniae 168]
          Length = 642

 Score =  522 bits (1343), Expect = e-146,   Method: Composition-based stats.
 Identities = 223/656 (33%), Positives = 350/656 (53%), Gaps = 35/656 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y    +++L+GLE VR RPGMYIG TD+  LH L  E+ DNA+DE IAG+AN I + ++
Sbjct: 2   TYSVEKLKLLKGLEAVRKRPGMYIGSTDKNGLHQLIWEIFDNAIDEAIAGFANEISLIIN 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  + + DNGRGIP E H K   K+ +E++ + LH+G KF    Y+ +GGLHGVG SVV
Sbjct: 62  SDNSIEISDNGRGIPTEIHKK-TGKTGVELVFSELHSGAKFSTDIYKTAGGLHGVGSSVV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS++L V + R   +F   F  G  +    K        GT+I F PD  +F   + F
Sbjct: 121 NALSEKLEVYINRDKKLFYTSFINGGKIETRTKIIGKSTITGTKIRFWPDFSLF-SHSEF 179

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D+  ++   +   +L   +K  +   K   EK        F    G++++++    ++  
Sbjct: 180 DSEMIISRLRETCFLINNLKINFFDTKNNIEKK-------FLCERGIESFIEFLNNDQEK 232

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRG 341
           I  +I T    K+      VE+   +   +   I S+ N + T+ GG+HE+G +    + 
Sbjct: 233 IHDKIITF---KEKMQEIIVEFGFQYVNSQQENIISFVNNVKTNLGGSHENGFKSGFLKA 289

Query: 342 IKKYAELTQNKRAISIISDDL-MISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVEN 398
           I  Y +     +   I+      +    +LS+ I E   EF GQTK KL ++ A+   E 
Sbjct: 290 INNYGQQNNLLKTKQILEFSDAKVGLSAVLSLRIPESILEFVGQTKNKLSTILAKTVTEE 349

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR---KQREVNRKTAIRKLRLPGKLAD 455
            +      +   N   A+K++ +++E   +R + +    + + ++     K  L GKL  
Sbjct: 350 VIFTNLMTFFALNKEVASKIINFILETYTQRQKSKLSIIESKTSKSITKEKRILSGKLTP 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
            +   A   ELF+VEG+SAGGSAK ARNR  QA+LPL+GKI+N        +  N++I+ 
Sbjct: 410 ANSKKAMNRELFLVEGESAGGSAKLARNREFQAILPLKGKIVNAQKTRLIDLLKNEEIIA 469

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ ALG      +  ++L Y K+IIMTDAD DGAHI  L+LTF +  M  LIE+  +++ 
Sbjct: 470 IISALGTGIGQNFNLKNLNYGKIIIMTDADNDGAHIQILILTFLFLHMRPLIEKGFVYIA 529

Query: 576 SPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
            PPL+RI+ +G K +Y  DEE  +K ++         ++I R+KGLGEM A+QL +T MD
Sbjct: 530 QPPLYRISEKGRKDIYIWDEEKFEKYIK-----NSTNLQIQRYKGLGEMNANQLWQTTMD 584

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA------SFIDDV 684
             +RTL +V I          +++   LMG +AD R  +I++         FI+++
Sbjct: 585 PERRTLEKVLIENYPK----VEENFQILMGERADLRKSWIEKNVDFSLEDKFIENL 636


>gi|148825154|ref|YP_001289907.1| DNA gyrase subunit B [Haemophilus influenzae PittEE]
 gi|89892398|gb|ABD78983.1| HI0567-like protein [Haemophilus influenzae]
 gi|148715314|gb|ABQ97524.1| DNA gyrase subunit B [Haemophilus influenzae PittEE]
          Length = 806

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 233/578 (40%), Positives = 353/578 (61%), Gaps = 19/578 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           +++ +DNY ASSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   SETTNDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCS 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V D+GRGIPV+ HP+    S  E+I+T LHAGGKFD+++Y++SGGLH
Sbjct: 62  DIIVTIHDDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD+L +T+ RQ  +  Q +  G P +PL          GT + F P   I
Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQAPLTVIGNT-ETTGTTVRFWPSSDI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     FD   L K  +  ++L+  V       ++ AE       + F++ GG++ +++ 
Sbjct: 180 FA-ITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGAE-------DHFHYEGGIQAFVEY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGL 334
             +N++ I  + F    EK G     VE A+ W +  N  +  + N I   +GGTH +G 
Sbjct: 232 LNKNKNPIHPKPFYFTAEKDGI---GVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGF 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y E      K  ++   DD     V I+SV + +P+F+ QTK KLVS + 
Sbjct: 289 RGALTRSLNSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEV 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
           +  VE+A+ +    YL++NP +A  ++  +I  +  R   RK RE+ R+   +    LPG
Sbjct: 349 KSAVESAMNEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGVLDIAGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSAK  R+R  QA+LPL+GKILNV  A  +K+ ++Q
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQ 468

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ 
Sbjct: 469 EVGTLITALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++++  PPL+++ +G +  Y  D +  ++        G
Sbjct: 529 YVYIAQPPLYKVKKGKQERYIKDADEMEQYELTLALDG 566



 Score =  130 bits (326), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 8/104 (7%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K          ++ +E   K  +  +E+ R+KGLGEM A QL ET MD N R +L
Sbjct: 710 VIRGEKVQPVRT---FEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRML 766

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R +FI+  A    ++ 
Sbjct: 767 KVSIKDAV----AADQLFTTLMGDEVEPRREFIELNALRA-NLD 805


>gi|309972282|gb|ADO95483.1| DNA gyrase subunit B [Haemophilus influenzae R2846]
          Length = 806

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 233/578 (40%), Positives = 353/578 (61%), Gaps = 19/578 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           +++ +DNY A+SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   SETTNDNYGAASIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCS 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V D+GRGIPV+ HP+    S  E+I+T LHAGGKFD+++Y++SGGLH
Sbjct: 62  DIIVTIHDDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD+L +T+ RQ  +  Q +  G P SPL    +     GT + F P   I
Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGET-EATGTTVRFWPSSDI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     FD   L K  +  ++L+  V       ++ +E       + F++ GG++ +++ 
Sbjct: 180 FA-ITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE-------DHFHYEGGIQAFVEY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGL 334
             +N++ I  + F    EK G     VE A+ W +  N  +  + N I   +GGTH +G 
Sbjct: 232 LNKNKNPIHPKPFYFTAEKDGI---GVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGF 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y E      K  ++   DD     V I+SV + +P+F+ QTK KLVS + 
Sbjct: 289 RGALTRSLNSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEV 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451
           +  VE+A+ +    YL++NP +A  ++  +I  +  R   RK R    RK A+    LPG
Sbjct: 349 KSAVESAMNEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSAK  R+R  QA+LPL+GKILNV  A  +K+ ++Q
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQ 468

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ 
Sbjct: 469 EVGTLITALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++++  PPL+++ +G +  Y  D +  ++        G
Sbjct: 529 YVYIAQPPLYKVKKGKQERYIKDADEMEQYELTLALDG 566



 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 8/104 (7%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K          ++ +E   K  +  +E+ R+KGLGEM A QL ET MD N R +L
Sbjct: 710 VIRGEKVQPVRS---FEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRML 766

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R +FI+  A    ++ 
Sbjct: 767 KVSIKDAV----AADQLFTTLMGDEVEPRREFIELNALRA-NLD 805


>gi|291615640|ref|YP_003518382.1| GyrB [Pantoea ananatis LMG 20103]
 gi|291150670|gb|ADD75254.1| GyrB [Pantoea ananatis LMG 20103]
          Length = 803

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 226/576 (39%), Positives = 346/576 (60%), Gaps = 18/576 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 3   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 62

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 63  TIHADNSVSVQDDGRGIPTGIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 121

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L +T+ R+  +  Q +  G+P +PL       +  GTRI F P    F + 
Sbjct: 122 SVVNALSQKLELTIRREGKVHQQIYLHGVPEAPLAVTGDT-DATGTRIRFWPSHDTFTNV 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++          + F++ GG++ +++   +N
Sbjct: 181 TDFEYDILAKRLRELSFLNSGVSIRLEDKRDA-------RNDHFHYEGGIRAFVEYLNKN 233

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   +F   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 234 KTPIHPTVFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 351 EQQMNELLAEYLLENPGDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +E+++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+  +Q++  
Sbjct: 411 CQERDPALSEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
             PPL+++ +G +  Y  D+E   +        G  
Sbjct: 531 AQPPLYKVKKGKQEQYIKDDEAMLQYQIAIALDGTS 566



 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ ++  +K  +  + + R+KGLGEM   QL ET MD + R +LRV I   +       
Sbjct: 718 FEQAIDWLEKESRRGLSVQRYKGLGEMNPEQLWETTMDPDSRRMLRVTIKDAI----AAD 773

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 774 QLFTTLMGDAVEPRRAFIEENALKAANID 802


>gi|300721093|ref|YP_003710361.1| DNA gyrase subunit B [Xenorhabdus nematophila ATCC 19061]
 gi|297627578|emb|CBJ88097.1| DNA gyrase, subunit B (type II topoisomerase) [Xenorhabdus
           nematophila ATCC 19061]
          Length = 804

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 227/579 (39%), Positives = 343/579 (59%), Gaps = 18/579 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+ YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ + I V
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCDKIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L +T+ R   +  Q +  G+P SPL        + GT + F P    F   
Sbjct: 121 SVVNALSEKLELTIRRDGKVHEQTYHHGVPQSPLNIVGDT-EQTGTTVRFWPSMDTFKIN 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       +  AE         F++ GG+K +++    N
Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLVDKRTNAEDL-------FHYKGGIKAFVEFLSRN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   +F   TEK G     VE ++ W +     I  + N I   +GGTH  G R A+
Sbjct: 233 KNPIHPNVFYFSTEKDGI---GVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 289

Query: 339 TRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNSYMDKEGYNKKSKVSATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 350 ETLMNEKLVEYLLENPNDAKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE+ ++++
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613
             PPL+++ +G +  Y  D++  +         G     
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDDAMEAYQMSIALDGAALYT 568



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            +  LE   K  +  + I R+KGLGEM   QL ET M+   R ++RV +   +     T 
Sbjct: 719 FEHALEWLSKESRRGLSIQRYKGLGEMNPEQLWETTMNPETRRMMRVTVKDAI----ATD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 LLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|126208297|ref|YP_001053522.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae L20]
 gi|126097089|gb|ABN73917.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 5b
           str. L20]
          Length = 810

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 236/584 (40%), Positives = 354/584 (60%), Gaps = 20/584 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
            + Q+ +++YD+SSI++L GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+
Sbjct: 1   MSEQNQTNSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 60

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
              I +++  +  ++V D+GRGIPV  HP+    S  E+I+T LHAGGKFD+++Y++SGG
Sbjct: 61  CKDIIITIHSDNSVSVQDDGRGIPVGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGG 119

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS +L +T+ R+  +  Q +S G P +PL       +K GT + F P  
Sbjct: 120 LHGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGEPDAPLTVIGDT-DKTGTMVRFWPSL 178

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF +K  F+   L K  +  ++L+  V      +++  E       E F + GG+K Y+
Sbjct: 179 DIFKNKTEFEYKILSKRLRELSFLNSGVSIRLIDERDGKE-------EHFKYEGGIKAYV 231

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   E ++ I +  F   TEK G     VE ++ W +     +  + N I   +GGTH +
Sbjct: 232 EYLNEGKTHIHNTPFYLSTEKDGI---GVEVSLQWNDSYNENVYCFTNNIPQRDGGTHLA 288

Query: 333 GLRVALTRGIKKYAELTQNKR----AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           G R ALTR +K Y + +   +     I    DD     V ++SV + +P+F+ QTK KLV
Sbjct: 289 GFRGALTRALKNYMDNSGVVKKADANIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLV 348

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447
           S + +  VE+++ +    YL +NP +A  ++  +I+ +  R   RK R    RK A+   
Sbjct: 349 SSEVRGAVESSMNEALSEYLAENPDDAKNIVTKIIDAARAREAARKAREMTRRKGALDLG 408

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +EL++VEGDSAGGSAKQ R+R NQA+LPL+GKILNV  A  +K+
Sbjct: 409 GLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKM 468

Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
            ++Q++  L+ ALG    R  Y  E LRY K+IIMTDADVDGAHI +LLLTFFY++M +L
Sbjct: 469 LSSQEVATLITALGTGIGRDDYNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPEL 528

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           IE  ++++  PPL+++ +G +  Y  D +   +   +    G G
Sbjct: 529 IENGYVYIAQPPLYKVKKGKQERYIQDNDEMSQYEIDIALEGAG 572



 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 5/89 (5%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
             + L+   +  +  + I R+KGLGEM   QL ET MD   R +L+V I   +       
Sbjct: 726 FAEALDWLVRESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNITDAI----AAD 781

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
              + LMG + + R  FI+  A +   + 
Sbjct: 782 KLFSTLMGDEVEPRRDFIESNALYA-QLD 809


>gi|313812934|gb|EFS50648.1| DNA gyrase, B subunit [Propionibacterium acnes HL025PA1]
          Length = 719

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 235/720 (32%), Positives = 339/720 (47%), Gaps = 56/720 (7%)

Query: 18  GSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHL 77
            +S                  S S  Y A ++ +LEGLE VR RP MYIG TD + L H 
Sbjct: 5   STSSANSSETPRGKGDTVRTASTSREYGAKNLLVLEGLEAVRKRPAMYIGSTDTRGLIHC 64

Query: 78  FSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137
             E+ DN +DE +AGY   I V+L+  G + V D GRGIPV+  P+    S LE++ T L
Sbjct: 65  LWEIFDNGVDEALAGYGRRITVTLEKAGSILVTDEGRGIPVDVEPR-TGLSGLEVVYTKL 123

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP-------- 189
           HAGGKF    Y +SGGLHGVG SVVNA+S  L V V R++T++   F RG+P        
Sbjct: 124 HAGGKFGGGAYNVSGGLHGVGASVVNAVSVRLDVEVDRKSTVWGMSFRRGVPGVFEGEGP 183

Query: 190 -------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
                      +  +  R+  GTR+ + PD +IF   A    ++L    +  A+L   ++
Sbjct: 184 DAPFTPGSGVRKVGKAKRDVTGTRVRYWPDRQIFLPDAKLSWSKLADRARQTAFLVPGLE 243

Query: 243 TCWSCDKEIAEKYGIPEK-----EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE---- 293
              + ++ I       +      E   F GG+  + +    ++ + +     G+T     
Sbjct: 244 IVITDERGIQTDPETGDVLETVSETMRFDGGISEFAEYLATDQPVNNVMRLQGETSFTET 303

Query: 294 ------------KKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340
                               V+ A+ W         S+ N I T +GGTH  G    L R
Sbjct: 304 VPMLDENGGMTPTDVDRDLGVDIALRWGTGYDTTVRSFVNIIATPKGGTHVQGFEQGLLR 363

Query: 341 GIKK-YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RT 395
                       K +  I+ DD++     +++V + EP+F GQTK  L +   +    R 
Sbjct: 364 AFSAGLEGTRILKSSEEIVKDDVLEGMTAVVTVSLAEPQFEGQTKEVLGTPPVRRLVARI 423

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454
           VE+ +          +   A  L+E V+  S  R+  R  +    RK A+    LP KL 
Sbjct: 424 VEDKMTAFLTSAKAADKPVARALMEKVVNASRTRVAARAHKENQRRKNALESSHLPPKLK 483

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC  +    TELFIVEGDSA G+A  ARN  +QA+LP+RGKILNV  A    +  N +  
Sbjct: 484 DCRSSDPDVTELFIVEGDSALGTANVARNSEHQALLPIRGKILNVQKADLGAMLKNAECA 543

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++Q +G  +   +  +  RY KVI M DAD DGAHI  LL T F++ M  ++E   +F 
Sbjct: 544 SIIQVVGAGSGKTFDLDQARYGKVIFMADADSDGAHIRCLLATLFFRYMRPMVEAGRVFS 603

Query: 575 ISPPLFRI-----TQG-TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             PPL R       +G  K +Y + +   Q+   +  K G    E  R+KGLGEM ASQL
Sbjct: 604 AVPPLHRFELINPKRGMDKYLYTYTDAEYQRTAAQLAKKGVRFKEPQRYKGLGEMDASQL 663

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVGT 686
           KET MD   RTL R+ ++       + + +   LMG +   R +FI E A  +D   +  
Sbjct: 664 KETTMDPRHRTLRRITVDD----AAEAEGTFEILMGNEVAPRKQFIVEGAYRLDAEQIDA 719


>gi|319638655|ref|ZP_07993415.1| topoisomerase IV subunit B [Neisseria mucosa C102]
 gi|317400039|gb|EFV80700.1| topoisomerase IV subunit B [Neisseria mucosa C102]
          Length = 661

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 245/672 (36%), Positives = 353/672 (52%), Gaps = 38/672 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ Y  SSI +L+GLEPV+ RPGMY   T   +  H+  EVIDNA DE + G+A  I+
Sbjct: 2   AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATEID 58

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154
           V +  +G L+V DNGRGIP+  HP+      +E++ T LHAGGKF+       Y  SGGL
Sbjct: 59  VQIHEDGSLSVRDNGRGIPIGLHPE-EGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213
           HGVG+SV NALS  L VTV R+  I    FS G  + PL +  K      GT +   PD 
Sbjct: 118 HGVGVSVTNALSTRLEVTVKREGKIHRIVFSGGDVIEPLTEVGKCAVKDSGTEVRVWPDG 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     +    L ++ ++KA L   V+   +      +       + +++P GLK+YL
Sbjct: 178 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEAHTQTWHYPDGLKSYL 233

Query: 274 QTKLENRSLISSEIFTGKTEKKGTH-----RGTVEWAIAWCEENPE-ITSYCNTILTDEG 327
              + +                G +          +A+ W EE      SY N I T  G
Sbjct: 234 TDLIADAQEAVPIFSCENYISDGHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293

Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           GTHE+GL+ A+   +  +  L     R + + SDD+      +LS  + +P+F GQTK K
Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRGVKVQSDDVFSKTAFVLSARVLDPQFQGQTKDK 353

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L + DA + V     DP + +L QN     K+ E  I +++ R+R    +++ +K     
Sbjct: 354 LTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSV--KKIEKKKGSGV 411

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKL DC        ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN      ++
Sbjct: 412 AVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +  N +I D+  A+G          D   LRY K+ I++DADVDG+HI  LLLT FY+  
Sbjct: 472 LFGNAEIHDISVAIGVDPHGINDNPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531

Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614
             LI   H+++  PPLFR+    QG     +  YA D+     ILE  +K G  +    I
Sbjct: 532 PKLIADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDSILERLQKEGVKETAYSI 591

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673
           SRFKGLGEM   QLK+T M  + R LL+V+I +  +   +T+D   KLMG  +A  R  +
Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETRDIFVKLMGKGEAAARRAW 649

Query: 674 IQERASFIDDVG 685
           +++     + + 
Sbjct: 650 MEKEGDTAE-LD 660


>gi|159037300|ref|YP_001536553.1| DNA gyrase subunit B [Salinispora arenicola CNS-205]
 gi|157916135|gb|ABV97562.1| DNA gyrase subunit B domain protein [Salinispora arenicola CNS-205]
          Length = 730

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 232/715 (32%), Positives = 345/715 (48%), Gaps = 56/715 (7%)

Query: 10  STLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT 69
              P  ++ +     ++ E     A         Y+A  +  LEGL+ VR RPGMYIG T
Sbjct: 24  CRTPADARRARHHTAETWEYDQLTAEPETL----YEADDLTHLEGLDAVRKRPGMYIGST 79

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
           D + + HL +E++DN+ DE +AG+A  IEV+L  +G + V D+GRGIP + H K    S 
Sbjct: 80  DSRGVGHLVNEILDNSTDEGVAGHATSIEVTLHADGSVQVDDDGRGIPTDVHAK-SGISG 138

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
           +E++LT LHAGGKF  S Y+ SGGLHGVG S VNALS    VTV R   I +  F  G+P
Sbjct: 139 VELVLTRLHAGGKFGGSGYKTSGGLHGVGASAVNALSRRFDVTVRRGGKIHTMSFRHGVP 198

Query: 190 LSPLEKKEKV----------------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
            +      +                 R + GT I +  DP+ F   A  DA  +    ++
Sbjct: 199 GTFDGDGPEAPFRAGPGLQVIGAVKRRQRTGTSIRYWYDPRYFEVGATLDAEAVRMKLRN 258

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            A+L   V                P +E F++P GL   +           S I     E
Sbjct: 259 TAFLVPGVSYLLRD-----HTGAEPVEERFHYPNGLTDMVDFLAPAGDRPVSGILVVSGE 313

Query: 294 ---------------KKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVA 337
                               R  VE A  W          + NTI    GGTH  G   A
Sbjct: 314 GTYRENAADANGVMQANVPRRAEVELAFRWGTGYERTVECFTNTIRNAHGGTHRKGFERA 373

Query: 338 LTRGIKKYAELTQ---NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           LTR +       +     +      DD++     ++ V I EP+F  QTK +L +    +
Sbjct: 374 LTRTLADAVRNARGLLKAKEDPPTLDDILEGMTAVVHVRIPEPQFTSQTKDELSTAGITK 433

Query: 395 TVENALRDPFDHYLVQ--NPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
            ++  +      +L +     EA  +L+ + + +  RL +++Q++   RKTA+    +P 
Sbjct: 434 VLQRLVEQHLKVWLEERRTKAEARTVLQKIADAARVRLTQKQQKDAARRKTALEGASMPA 493

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL DC       +E+FIVEGDSA G+A+ AR+   QA+LP+RGKILNV  A  +++ +N 
Sbjct: 494 KLVDCRSTGVARSEMFIVEGDSALGTARLARSSEYQALLPIRGKILNVQKANLQQVLDNA 553

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +   +VQ LG  +   +    +RY +V+IM DADVDGAHI +LL+T F + M  LIE   
Sbjct: 554 ECAAIVQVLGAGSGRTFDLSAVRYGRVLIMADADVDGAHIRTLLITLFARYMRPLIEAGR 613

Query: 572 LFLISPPLFRIT---QGTKSVYAHDEEHKQKILEEFKKHGKGKIE-ISRFKGLGEMLASQ 627
           L+   PPL +IT   +  ++VY + +E  +  +   +K GK  +  I RFKGLGEM A +
Sbjct: 614 LYAAMPPLHKITTRGRNPQTVYTYTQEEMEATVRRLEKAGKQIVTPIPRFKGLGEMNADE 673

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           L ET M+   R + R+ +       +  +  +  LMG K + R  ++   A  +D
Sbjct: 674 LWETTMNPAGRAVRRITLED----AEAAEQVLELLMGEKVEPRRNWLIASADRVD 724


>gi|50123356|ref|YP_052523.1| DNA gyrase subunit B [Pectobacterium atrosepticum SCRI1043]
 gi|49613882|emb|CAG77334.1| DNA gyrase subunit B [Pectobacterium atrosepticum SCRI1043]
          Length = 805

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 221/566 (39%), Positives = 345/566 (60%), Gaps = 17/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY   I +
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIII 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEE-EGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L + + R+  +  Q +  G+  +PL    +  ++ GT + F P  + F + 
Sbjct: 121 SVVNALSEKLKLVIHREGKLHEQTYKHGVAQAPLAVTGET-DRTGTTVRFWPSHETFSNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V      D+E        + + +++ GG+K ++     N
Sbjct: 180 LEFEYEILAKRLRELSFLNSGVSIRLIDDREKD------KADHYHYDGGIKAFVDYLNRN 233

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   +F   T K       VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 234 KTPIHPNVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  IS   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNTYMDKEGYSKKSKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLAD 455
           E+ + +    YL++NP +A  ++  +I+ +  R   RK      RK A+    LPGKLAD
Sbjct: 351 ESLVNEKLVDYLMENPSDAKIVVGKIIDAARAREAARKARDMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY+++ +++E+ H+++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQLPEIVERGHVYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  D+E   + 
Sbjct: 531 AQPPLYKVKKGKQEQYIKDDEAMDQY 556



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ LE   K  +  + + R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 720 FEQALEWLVKESRRGLTVQRYKGLGEMNPDQLWETTMDPTSRRMLRVTVKDAI----AAD 775

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           +    LMG   + R  FI+E A    ++ 
Sbjct: 776 ELFTTLMGDAVEPRRAFIEENALKAMNID 804


>gi|46143431|ref|ZP_00135256.2| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), B subunit [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|165976237|ref|YP_001651830.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|190150147|ref|YP_001968672.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|303251321|ref|ZP_07337499.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|303252819|ref|ZP_07338978.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|307245683|ref|ZP_07527769.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|307247805|ref|ZP_07529841.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|307250051|ref|ZP_07532015.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|307252443|ref|ZP_07534339.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307254650|ref|ZP_07536479.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|307256870|ref|ZP_07538648.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|307259097|ref|ZP_07540827.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
 gi|307261303|ref|ZP_07542978.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
 gi|307263484|ref|ZP_07545099.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
 gi|165876338|gb|ABY69386.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|189915278|gb|ACE61530.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|302648249|gb|EFL78446.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|302649863|gb|EFL80041.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306853385|gb|EFM85604.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|306855607|gb|EFM87774.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|306857911|gb|EFM90003.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|306860035|gb|EFM92052.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306862395|gb|EFM94360.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|306864604|gb|EFM96509.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|306866764|gb|EFM98622.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
 gi|306869034|gb|EFN00836.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
 gi|306871127|gb|EFN02856.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
          Length = 810

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 236/584 (40%), Positives = 354/584 (60%), Gaps = 20/584 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
            + Q+ +++YD+SSI++L GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+
Sbjct: 1   MSEQNQTNSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 60

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
              I +++  +  ++V D+GRGIPV  HP+    S  E+I+T LHAGGKFD+++Y++SGG
Sbjct: 61  CKDIIITIHSDNSVSVQDDGRGIPVGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGG 119

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS +L +T+ R+  +  Q +S G P +PL       +K GT + F P  
Sbjct: 120 LHGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGEPDAPLTVIGDT-DKTGTMVRFWPSL 178

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF +K  F+   L K  +  ++L+  V      +++  E       E F + GG+K Y+
Sbjct: 179 DIFKNKTEFEYKILSKRLRELSFLNSGVSIRLIDERDGKE-------EHFKYEGGIKAYV 231

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   E ++ I +  F   TEK G     VE ++ W +     +  + N I   +GGTH +
Sbjct: 232 EYLNEGKTHIHNTPFYLSTEKDGI---GVEVSLQWNDSYNENVYCFTNNIPQRDGGTHLA 288

Query: 333 GLRVALTRGIKKYAELTQNKR----AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           G R ALTR +K Y + +   +     I    DD     V ++SV + +P+F+ QTK KLV
Sbjct: 289 GFRGALTRALKNYMDNSGVVKKADANIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLV 348

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447
           S + +  VE+++ +    YL +NP +A  ++  +I+ +  R   RK R    RK A+   
Sbjct: 349 SSEVRGAVESSMNEALSEYLAENPDDAKNIVTKIIDAARAREAARKAREMTRRKGALDLG 408

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +EL++VEGDSAGGSAKQ R+R NQA+LPL+GKILNV  A  +K+
Sbjct: 409 GLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKM 468

Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
            ++Q++  L+ ALG    R  Y  E LRY K+IIMTDADVDGAHI +LLLTFFY++M +L
Sbjct: 469 LSSQEVATLITALGTGIGRDDYNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPEL 528

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           IE  ++++  PPL+++ +G +  Y  D +   +   +    G G
Sbjct: 529 IENGYVYIAQPPLYKVKKGKQERYIQDNDEMSQYEIDIALEGAG 572



 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 5/89 (5%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
             + L+   +  +  + I R+KGLGEM   QL ET MD   R +L+V I   +       
Sbjct: 726 FAEALDWLVRESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNITDAI----AAD 781

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
              + LMG + + R  FI+  A +   + 
Sbjct: 782 KLFSTLMGDEVEPRRDFIESNALYA-QLD 809


>gi|163856283|ref|YP_001630581.1| DNA topoisomerase IV subunit B [Bordetella petrii DSM 12804]
 gi|163260011|emb|CAP42312.1| topoisomerase IV subunit B [Bordetella petrii]
          Length = 680

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 249/668 (37%), Positives = 352/668 (52%), Gaps = 39/668 (5%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A+  Y  +SIR+L+GLEPVR RPGMY   T  +   H+  EVIDNA DE +AGY   I+V
Sbjct: 29  ATPRYTEASIRVLKGLEPVRQRPGMY---TRTENPLHVVQEVIDNAADEALAGYGKQIQV 85

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLHG 156
           +L  +G ++V D+GRGIPV  HP+      +E++ T LHAGGKFD      Y  SGGLHG
Sbjct: 86  TLHADGSVSVEDDGRGIPVGLHPE-EKAPVVELVFTRLHAGGKFDKQGGGAYAFSGGLHG 144

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKI 215
           VG+SV NAL+  L V V R        F  G    PL    +  R K GTR+   PDPK 
Sbjct: 145 VGVSVTNALATRLEVVVWRDGATSRLVFKGGDVAEPLAPYTEAGRKKSGTRVRVWPDPKY 204

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F          L  + +SKA L   VK   + +K    K        + +  GL+ YL  
Sbjct: 205 FDS-PQIPPGELTHLLRSKAVLLPGVKVTLTNEKTGDTKT-------WQYEDGLRGYLAE 256

Query: 276 KLENRSLISS----EIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTH 330
            L    L+      + + G   +        +W +AW E+      SY N I T  GGTH
Sbjct: 257 ALAGAELMVPFFEGQQYAGADHETFADGEGAQWVVAWTEDGNAVRESYVNLIPTPAGGTH 316

Query: 331 ESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           ESGLR  L   +K +AEL     + + ++ +D+   A  +LS  + +P+F GQ K +L S
Sbjct: 317 ESGLREGLYGAVKGFAELHGLLPKGVKLLPEDVFARASFVLSAKVLDPQFQGQIKERLNS 376

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
            DA R V    +   D +L  N     KL E  I +++ R R    ++V ++ +     L
Sbjct: 377 RDAVRLVGGFSKSALDLWLHSNVEYGKKLAELAIRQAQARAR--SAQKVEKRKSSGVAVL 434

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKL DC  + A  TE+F+VEGDSAGGSAK  R++  QA+LPLRGK+LN      +++  
Sbjct: 435 PGKLTDCESSDASRTEVFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNSWEVDRDRLFA 494

Query: 510 NQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           N +I D+  A+G          D   LRY ++ I++DADVDG+HI  LLLT FY+    L
Sbjct: 495 NNEIHDIAVAIGVDPHGPNDTPDLSGLRYGRICILSDADVDGSHIQVLLLTLFYRHFPRL 554

Query: 567 IEQKHLFLISPPLFRIT---QGT---KSVYAHDEEHKQKILEEFKKHG--KGKIEISRFK 618
           +E  ++++  PPLFR+    QG    + +Y  D+   +   ++ +K G  +G   ISRFK
Sbjct: 555 VEAGNVYVAKPPLFRLDVPAQGKRPARKIYCLDQGELEAAQDKLRKEGVREGAWSISRFK 614

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQER 677
           GLGEM   QL ET M+ + R LL V       S  DT    + LMG  ++ +R  +I+E+
Sbjct: 615 GLGEMNPEQLWETTMNPDTRRLLPVGY--GSLSPDDTTRMFDMLMGKGESSQRRAWIEEK 672

Query: 678 ASFIDDVG 685
            +  + + 
Sbjct: 673 GNLAE-LD 679


>gi|153954762|ref|YP_001395527.1| DNA topoisomerase IV subunit B [Clostridium kluyveri DSM 555]
 gi|219855226|ref|YP_002472348.1| hypothetical protein CKR_1883 [Clostridium kluyveri NBRC 12016]
 gi|146347620|gb|EDK34156.1| GyrB2 [Clostridium kluyveri DSM 555]
 gi|219568950|dbj|BAH06934.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 649

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 216/662 (32%), Positives = 344/662 (51%), Gaps = 36/662 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
             S  YD +S+  LE LEPVR+RPGMYIG T  K LHH   E++DN++DE+  G+ + + 
Sbjct: 4   KISSVYDVNSLTSLEKLEPVRVRPGMYIGSTGSKGLHHCIWEILDNSIDEISNGFGDKVC 63

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V L+ +G ++V+DNGRGIP   HP    K+ +E++ T+LH GGKF+N  Y+ SGGLHGVG
Sbjct: 64  VILNEDGSVSVIDNGRGIPTGTHP-VTKKNGVEMVFTSLHTGGKFNNDIYKTSGGLHGVG 122

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTRI 207
            +VVNALS  + V V +   I+ QKF             G P++ LE      +  GT++
Sbjct: 123 GAVVNALSSWMEVEVKQNGHIYKQKFEYAYDSTLKKIMPGTPVTGLEIIGNT-DDTGTKV 181

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
           TF PD K+F     F    + +  +  A+ +  +           EK  + +  E++   
Sbjct: 182 TFMPDNKVFST-VDFKLDIIEERLKELAFQNKGITLKLI---HWEEKNKVEK--EYHSDR 235

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGT-HRGTVEWAIAWCEENPEIT-SYCNTILTD 325
           GL  +++   E+++ +  E    + E+     +   E  I + +       SY N I T 
Sbjct: 236 GLLDFIEYLNESKTPLHKEPILFQGERSVEGIKMKGEVCIQFTDSTTYHIASYVNNIPTT 295

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           E GTHESG +  +TR  K++A+      ++      +DL      I+ V I  P F GQT
Sbjct: 296 ESGTHESGFKTGMTRAFKEWAKKLNLIKEKDREFEGEDLREGMTAIVKVSINNPVFEGQT 355

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKT 442
           KTKL + +A   +          ++  N   A+ ++   +  +  R + +K  +   +K 
Sbjct: 356 KTKLGNSEAYTIMNELSYTKLSEWIEDNKNTASIIINNALHAAARREKIKKINDAEKKKI 415

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
                 L GK+A C+   +   E  +VEGDSAGGSAKQAR+R  Q ++P +GKI+N    
Sbjct: 416 GKGAAPLAGKIAVCTLKDSSKCEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQ 475

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
             E +  ++++     A+G      Y E+DL+Y+K+II++DADVDG HI +L +T+ Y+ 
Sbjct: 476 KLENVLGSEELKIFNTAIGTGILKNYNEKDLKYDKIIILSDADVDGYHIRALWMTYIYRY 535

Query: 563 MYDLIEQKHLFLISPPLFRITQ---GTK-SVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           M +LI   HL++  PPL+++ +   G +   YA+ +    +   E          I R+K
Sbjct: 536 MRELILNGHLYIALPPLYKVYKQVRGKEVVKYAYSDNQLLQAKREIGPKAL----IQRYK 591

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           GLGEM   QL +T ++   RTL ++ I+  +      +  ++ LMG     R K++ + A
Sbjct: 592 GLGEMNPDQLWDTTLNPESRTLQQITIDDVIK----AEKMVSLLMGDVVAPRKKYMYKHA 647

Query: 679 SF 680
            F
Sbjct: 648 EF 649


>gi|255320043|ref|ZP_05361239.1| DNA topoisomerase IV, B subunit [Acinetobacter radioresistens SK82]
 gi|262380549|ref|ZP_06073703.1| DNA topoisomerase IV, B subunit [Acinetobacter radioresistens
           SH164]
 gi|255302911|gb|EET82132.1| DNA topoisomerase IV, B subunit [Acinetobacter radioresistens SK82]
 gi|262297995|gb|EEY85910.1| DNA topoisomerase IV, B subunit [Acinetobacter radioresistens
           SH164]
          Length = 626

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 262/646 (40%), Positives = 374/646 (57%), Gaps = 29/646 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y A S+ +L GL+PVR RPGMY   TD    +HL  EVIDNA+DE +AG+AN I V +
Sbjct: 2   SQYTAQSLEVLSGLDPVRRRPGMY---TDTTRPNHLAQEVIDNAVDEALAGHANQIAVKV 58

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G L+V DNGRG+PV+ HP++  +S +EIILT LHAGGKF    Y+ SGGLHGVGISV
Sbjct: 59  YKDGSLSVEDNGRGMPVDIHPEY-GQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISV 117

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGDK 219
           VNALS  + V V RQ  ++   F  G P++PLE  E    +   GT + F P+   + D 
Sbjct: 118 VNALSTRVEVEVQRQGNLYKMAFEHGEPVAPLEVLEGKAPKRASGTTVRFWPE-TRYFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L    ++KA L+  +K  +  +          EK E+ F  GL  YL  +L+ 
Sbjct: 177 PKFALKALKHNLKAKAVLAAGLKINYIDE-------INNEKIEWQFENGLVDYLMDELQE 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVA 337
           R ++    F    E +   R + E+AI W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 REIVPQPAFVATGEAE---RASAEFAICWNTEGGEQIQESYVNLIPTAQGGTHVNGLRSG 286

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           +T  ++++ EL     R + + ++D+      ILS+  +EP+F+GQTK +L S +A   V
Sbjct: 287 ITDALREFCELRNLLPRNLKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREASSIV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +N  +D F  +L QN   A +L E  I ++  RL+    ++V RK  +    LPGKLADC
Sbjct: 347 QNIAKDAFTLWLNQNSEIAMQLAEMAISKAGRRLK--AAKKVERKKIVSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +      +ELFIVEGDSAGGSAKQAR+++ QA++P+RGKILN     S+++  +Q++ D+
Sbjct: 405 AGLTREDSELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLGSQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S     +LRY KV I+ DAD DG HIA+LL   F +    L+E+ HLF+  
Sbjct: 465 AIAIGVDPGSDDL-SELRYGKVCILADADSDGLHIATLLCALFVKHFPALVEEGHLFVAM 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLFRI  G    YA DE+  + IL   KK      +I+RFKGLGEM ASQL+ET MD N
Sbjct: 524 PPLFRIDDGKDVHYALDEDELEAIL---KKTKTKTPQITRFKGLGEMNASQLRETTMDPN 580

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            R L++++++    +          L   ++ +R  +++++ +  D
Sbjct: 581 TRRLVQLDLDDIQLTAGLLDKL---LAKKRSSDRKHWLEQKGNLAD 623


>gi|94471630|gb|ABF21081.1| DNA gyrase subunit B [Spiroplasma culicicola]
          Length = 606

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 235/622 (37%), Positives = 360/622 (57%), Gaps = 20/622 (3%)

Query: 67  GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           G T++  LHH+  E++DNA+DE +AG+ + I + +     + + DNGRGIPV+ HPK  N
Sbjct: 1   GNTNKNGLHHMIWEILDNAVDESLAGFCDEITIIMTEENEIIIKDNGRGIPVDLHPK-TN 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           KSTLE I T LHAGGKFD STY+ISGGLHGVG SVVNALS  +   ++R N ++ QKF  
Sbjct: 60  KSTLETIFTVLHAGGKFDESTYKISGGLHGVGASVVNALSLYVEAIISRDNVLYHQKFYD 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G   +   K+  + +  G+ I F+PDP+IF +   FD   +    +  A+L+  +K    
Sbjct: 120 GGTKATELKEIGISDSTGSIIKFKPDPEIFKETIEFDFKVVQTKIKQLAFLNKGLKIELY 179

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             K         +   + F  G+K Y++     +  I+ EIF          +  VE ++
Sbjct: 180 DQK-------NDKFLSYRFDDGIKDYIKEINSGKEKINEEIFYI---NDTYEKIEVEVSV 229

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
            + +     I S+CN I T EGG+HE G + ++ R +  Y    +N +    + +D+   
Sbjct: 230 QYNDTYDENIFSFCNNIFTSEGGSHEDGFKTSILRSLNTYTNELKNFKGNKFVFEDIKEG 289

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              ++S+   +P + GQTK KL + DA+  V N + + F  +L++NP +A K+++ ++  
Sbjct: 290 MCAVISIKHVDPLYEGQTKAKLSNPDAKDAVNNIVFESFKEFLLKNPNDAKKIIDKILIS 349

Query: 426 SEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
            + R   ++ RE   RK+AI    LPGKLADC    A+ +E+++VEGDSAGGSAK  RNR
Sbjct: 350 QKARKAAQRAREDTRRKSAIDNFSLPGKLADCESKDANESEIYLVEGDSAGGSAKTGRNR 409

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA+L L+GK+LNV      K+  N +I  ++ A+G   ++ +    +RY+K+IIMTDA
Sbjct: 410 KTQAILSLKGKVLNVEKVKQSKVFENNEIQSIIAAIGTGVKNDFNIAKIRYKKIIIMTDA 469

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603
           DVDGAHI  LLLTFFY+ M +LI   ++++  PPL++I  G  K  YA+ ++  +K+  E
Sbjct: 470 DVDGAHIRVLLLTFFYRYMKELILNGNIYIAQPPLYKIDAGKNKVDYAYSDQELEKLKNE 529

Query: 604 FKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLM 663
             K+   K  I R+KGLGEM   QL ET MD  +RT+L++++           +  + LM
Sbjct: 530 --KYKDTKYIIQRYKGLGEMDPIQLWETTMDPTRRTMLQIKVEDAFM----ANEVFSSLM 583

Query: 664 GTKADERFKFIQERASFIDDVG 685
           G  A+ R  FI E A F++++ 
Sbjct: 584 GESAELRRNFITENAQFVENID 605


>gi|227113113|ref|ZP_03826769.1| DNA gyrase subunit B [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 805

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 221/574 (38%), Positives = 345/574 (60%), Gaps = 17/574 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY   I +
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIII 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEE-EGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L + + R   +  Q +  G+  +PL    +  N+ GT + F P  + F + 
Sbjct: 121 SVVNALSEKLTLVIHRDGKLHEQTYKHGVAQAPLAVTGET-NRTGTTVRFWPSHETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V      ++E        + + +++ GG+K ++     N
Sbjct: 180 VEFEYEILAKRLRELSFLNSGVSIRLIDEREKD------KADHYHYDGGIKAFVDYLNRN 233

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   +F   T K       VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 234 KTPIHPNVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNTYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLAD 455
           E+ + +    YL++NP +A  ++  +I+ +  R   RK      RK A+    LPGKLAD
Sbjct: 351 ESLMNEKLVDYLMENPSDAKIVVGKIIDAARAREAARKARDMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY+++ +++E+ H+++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQLPEIVERGHVYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +        G
Sbjct: 531 AQPPLYKVKKGKQEQYIKDDEAMDQYQIALALDG 564



 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ LE   K  +  + + R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 720 FEQALEWLVKESRRGLTVQRYKGLGEMNPDQLWETTMDPTSRRMLRVTVKDAI----AAD 775

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           +    LMG   + R  FI+E A    ++ 
Sbjct: 776 ELFTTLMGDAVEPRRAFIEENALKAMNID 804


>gi|54020320|ref|YP_115550.1| topoisomerase IV subunit B [Mycoplasma hyopneumoniae 232]
 gi|53987493|gb|AAV27694.1| topoisomerase IV subunit B [Mycoplasma hyopneumoniae 232]
          Length = 641

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 222/656 (33%), Positives = 350/656 (53%), Gaps = 35/656 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y    +++L+GLE VR RPGMYIG TD+  LH L  E+ DNA+DE IAG+AN I + ++
Sbjct: 2   TYSVEKLKLLKGLEAVRKRPGMYIGSTDKNGLHQLIWEIFDNAIDEAIAGFANEISLIIN 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  + + DNGRGIP E H K   K+ +E++ + LH+G KF    Y+ +GGLHGVG SVV
Sbjct: 62  SDNSIEISDNGRGIPTEIHKK-TGKTGVELVFSELHSGAKFSTDIYKTAGGLHGVGSSVV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS++L V + R   +F   F  G  +    K        GT+I F PD  +F   + F
Sbjct: 121 NALSEKLEVYINRDKKLFYTSFINGGKIETRTKIIGKSATTGTKIRFWPDFSLF-SHSEF 179

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D+  ++   +   +L   +K  +   K   EK        F    G++++++    ++  
Sbjct: 180 DSEMIISRLRETCFLINNLKINFFDTKNNIEKK-------FLCERGIESFIEFLNNDQEK 232

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRG 341
           I  ++ T    K+      VE+   +   +   I S+ N + T+ GG+HE+G +    + 
Sbjct: 233 IHDKVITF---KEKMQEIIVEFGFQYVNSQQENIISFVNNVKTNLGGSHENGFKSGFLKA 289

Query: 342 IKKYAELTQNKRAISIISDDL-MISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVEN 398
           I  Y +     +   I+      +    +LS+ I E   EF GQTK KL ++ A+   E 
Sbjct: 290 INTYGQQNNLLKTKQILEFSDAKVGLSAVLSLRIPESILEFVGQTKNKLSTILAKTVTEE 349

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR---KQREVNRKTAIRKLRLPGKLAD 455
            +      +   N   A+K++ +++E   +R + +    + + ++     K  L GKL  
Sbjct: 350 VIFTNLMTFFALNKEVASKIINFILETYTQRQKSKLSIIESKTSKSITKEKRILSGKLTP 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
            +   A   ELF+VEG+SAGGSAK ARNR  QA+LPL+GKI+N        +  N++I+ 
Sbjct: 410 ANSKKAMNRELFLVEGESAGGSAKLARNREFQAILPLKGKIVNAQKTRLIDLLKNEEIIA 469

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ ALG      +  ++L Y K+IIMTDAD DGAHI  L+LTF +  M  LIE+  +++ 
Sbjct: 470 IISALGTGIGQNFNLKNLNYGKIIIMTDADNDGAHIQILILTFLFLHMRPLIEKGFVYIA 529

Query: 576 SPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
            PPL+RI+ +G K +Y  DEE  +K ++         ++I R+KGLGEM A+QL +T MD
Sbjct: 530 QPPLYRISEKGRKDIYIWDEEKFEKYIK-----NSTNLQIQRYKGLGEMNANQLWQTTMD 584

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA------SFIDDV 684
             +RTL +V I          +++   LMG +AD R  +I++         FI+++
Sbjct: 585 PERRTLEKVLIENYPK----VEENFQILMGERADLRKSWIEKNVDFSLEDKFIENL 636


>gi|297180059|gb|ADI16284.1| type IIa topoisomerase (DNA gyrase/topo II, topoisomerase IV), b
           subunit [uncultured bacterium HF0010_16H03]
          Length = 633

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 240/647 (37%), Positives = 367/647 (56%), Gaps = 22/647 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A  +YDA +I +L GL+PVR RPGMY   TD    +HL  EV+DN++DE ++G+ + I++
Sbjct: 2   AKKSYDAQAIEVLSGLDPVRKRPGMY---TDTSNPNHLIQEVLDNSVDEALSGHCSNIKI 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +G + + DNGRG+PV+ HP+  N S +E+IL  LHAG KF    Y  SGGLHGVG+
Sbjct: 59  NILKDGNIKISDNGRGMPVDIHPEH-NVSGVELILCKLHAGAKFSGDDYNFSGGLHGVGV 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGD 218
           SVVNALS+ L V V R +  +   F  G  +S L++  +V     GT I FRP+P ++ +
Sbjct: 118 SVVNALSERLEVNVRRNSKEYQIIFENGHKVSELKEVGEVGIRNTGTSIIFRPNP-VYFE 176

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
                   L  + ++KA L   +   ++ +K+  +K      E++YF  GLK+YL    E
Sbjct: 177 NIEVQIKALKHLLKAKAVLCPGLTLEFANEKKPKDK------EKWYFEDGLKSYLLESAE 230

Query: 279 NRSLISSEIFTGKTEKKG-THRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337
              LI  E      E KG      + W+     +N    +Y N I T +GG+H +G +  
Sbjct: 231 GAELILDESIVCSKEGKGQELEFAINWS-QRLPKNKLDETYVNLIPTAQGGSHLNGFKSG 289

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   IK++ +      + + I +DD++ +A+ I+S  ++ P+FAGQTK +L S D    V
Sbjct: 290 LLDSIKEFCDYRNLLPKGLKINADDVINNAIFIVSSKLQNPQFAGQTKERLDSKDHMSFV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
            +  +D F  +L  +  E  K+ E  +  ++ R +     E  +    +   LPGKL+DC
Sbjct: 350 SSVTKDTFSIWLNTHTEEGEKIAELAVISAQTRAKASNIIERKKT--FKGPALPGKLSDC 407

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR RS QA++PLRGKILN     S +I  +Q+I +L
Sbjct: 408 NSQDLNETELFLVEGDSAGGSAKQARERSFQAIMPLRGKILNTWDLESSEIIKSQEIKNL 467

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    +      LRY K+ I+ DAD DG HIA+LL   F +    L+++  +++  
Sbjct: 468 STAIGVLPGNNDL-SSLRYGKICILADADSDGLHIATLLCALFLRHYKPLVQEGRIYISM 526

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFK-KHGKGKIEISRFKGLGEMLASQLKETAMDA 635
           PPL+RI  G   +YA D+  ++K++  F+ K GK KI I RFKGLGEM  SQL+ET MD 
Sbjct: 527 PPLYRIDCGKDVLYAVDDVQREKVISNFQNKKGKSKINIQRFKGLGEMNPSQLRETVMDP 586

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
             R L+++ ++   N+       ++K     A  R ++++++ S   
Sbjct: 587 ETRLLVKLSLSSSDNANSMMDLLLSK---KNASARKEWLEKKGSLAK 630


>gi|229846657|ref|ZP_04466765.1| DNA gyrase subunit B [Haemophilus influenzae 7P49H1]
 gi|229810750|gb|EEP46468.1| DNA gyrase subunit B [Haemophilus influenzae 7P49H1]
          Length = 806

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 233/578 (40%), Positives = 353/578 (61%), Gaps = 19/578 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           +++ +DNY ASSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   SETTNDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCS 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V D+GRGIPV+ HP+    S  E+I+T LHAGGKFD+++Y++SGGLH
Sbjct: 62  DIIVTIHDDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD+L +T+ RQ  +  Q +  G P +PL          GT + F P   I
Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQAPLTVIGNT-ETTGTTVRFWPSSDI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     FD   L K  +  ++L+  V       ++ AE       + F++ GG++ +++ 
Sbjct: 180 FA-ITTFDYKILAKRLRELSFLNFGVSIRLIDKRDGAE-------DHFHYEGGIQAFVEY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGL 334
             +N++ I  + F    EK G     VE A+ W +  N  +  + N I   +GGTH +G 
Sbjct: 232 LNKNKNPIHPKPFYFTAEKDGI---GVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGF 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y E      K  ++   DD     V I+SV + +P+F+ QTK KLVS + 
Sbjct: 289 RGALTRSLNSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEV 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
           +  VE+A+ +    YL++NP +A  ++  +I  +  R   RK RE+ R+   +    LPG
Sbjct: 349 KSAVESAMNEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGVLDIAGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSAK  R+R  QA+LPL+GKILNV  A  +K+ ++Q
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQ 468

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ 
Sbjct: 469 EVGTLITALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++++  PPL+++ +G +  Y  D +  ++        G
Sbjct: 529 YVYIAQPPLYKVKKGKQERYIKDADEMEQYELTLALDG 566



 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 8/104 (7%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K          ++ +E   K  +  +E+ R+KGLGEM A QL ET MD N R +L
Sbjct: 710 VIRGEKVQPVRS---FEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRML 766

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R +FI+  A    ++ 
Sbjct: 767 KVSIKDAV----AADQLFTTLMGDEVEPRREFIELNALRA-NLD 805


>gi|254494123|ref|ZP_05107294.1| topoisomerase IV subunit B [Neisseria gonorrhoeae 1291]
 gi|226513163|gb|EEH62508.1| topoisomerase IV subunit B [Neisseria gonorrhoeae 1291]
          Length = 661

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 242/672 (36%), Positives = 351/672 (52%), Gaps = 38/672 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ Y  SSI +L+GLEPV+ RPGMY   T   +  H+  EVIDNA DE + G+A  I+
Sbjct: 2   AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATEID 58

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154
           V +  +G L+V DNGRGIPV  HP+      +E++ T LHAGGKF+       Y  SGGL
Sbjct: 59  VQIHEDGSLSVRDNGRGIPVGLHPE-EGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213
           HGVG+SV NALS  L V+V R   +    F+ G  + PL +  K      GT +   PD 
Sbjct: 118 HGVGVSVTNALSTRLEVSVKRDGKVHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRVWPDG 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     +    L ++ ++KA L   V+   +      +       + +++P GLK+YL
Sbjct: 178 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEAHTQTWHYPDGLKSYL 233

Query: 274 QTKLENRSLISSEIFTGKTEKKGTH-----RGTVEWAIAWCEENPE-ITSYCNTILTDEG 327
              + +                G +          +A+ W EE      SY N I T  G
Sbjct: 234 TDLIADAQEAVPLFSCENYISDGHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTSLG 293

Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           GTHE+GL+ A+   +  +  L     R + + SDD+      +LS  + +P+F GQTK K
Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRGVKVQSDDVFGKTAFVLSACVLDPQFQGQTKDK 353

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L + DA + V     DP + +L QN     K+ E  I +++ R+R    +++ +K     
Sbjct: 354 LTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARIRSV--KKIEKKKGSGV 411

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKL DC        ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN      ++
Sbjct: 412 AILPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +  N +I D+  A+G    +     D   LRY K+ I++DADVDG+HI  LLLT FY+  
Sbjct: 472 LFGNAEIHDISVAIGVDPHAINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531

Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614
             L+   H+++  PPLFR+    QG     +  YA D+     ILE  +K G  +    I
Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDGILERLQKEGVKETAYSI 591

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673
           SRFKGLGEM   QLK+T M  + R LL+V+I +  +   +T+D   KLMG  +A  R  +
Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETRDIFVKLMGKGEAAARRAW 649

Query: 674 IQERASFIDDVG 685
           ++        + 
Sbjct: 650 MEREGDTA-QLD 660


>gi|295130602|ref|YP_003581265.1| DNA gyrase, B subunit, C-terminal domain protein [Propionibacterium
           acnes SK137]
 gi|291375117|gb|ADD98971.1| DNA gyrase, B subunit, C-terminal domain protein [Propionibacterium
           acnes SK137]
          Length = 698

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 234/703 (33%), Positives = 335/703 (47%), Gaps = 56/703 (7%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
               S S  Y A ++ +LEGLE VR RP MYIG TD + L H   E+ DN +DE +AGY 
Sbjct: 1   MRTASTSREYGAKNLLVLEGLEAVRKRPAMYIGSTDTRGLMHCLWEIFDNGVDEALAGYG 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             I V+L+  G + V D GRGIPV+  P     S LE++ T LHAGGKF    Y +SGGL
Sbjct: 61  RRITVTLEKAGSILVTDEGRGIPVDVEP-HTGLSGLEVVYTKLHAGGKFGGGAYNVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP---------------LSPLEKKEKV 199
           HGVG SVVNA+S  L V V R++T++   F RG+P                   +  +  
Sbjct: 120 HGVGASVVNAVSVRLDVEVDRKSTVWGMSFRRGVPGVFEGEGPDAPFTPGSGVRKVGKAK 179

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
           R   GTR+ + PD +IF   A    ++L    +  A+L   ++   + ++ I       +
Sbjct: 180 RGVTGTRVRYWPDRQIFLPDAKLSWSKLADRARQTAFLVPGLEIVITDERGIQTDPETGD 239

Query: 260 K-----EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTH 298
                 E   F GG+  + +    ++ + +     G+T                      
Sbjct: 240 VLETVSETMRFDGGISEFAEYLATDQPVNNVMRLQGETSFTETVPMLDENGGMTPTDVDR 299

Query: 299 RGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKK-YAELTQNKRAIS 356
              V+ A+ W         S+ N I T +GGTH  G    L R            K +  
Sbjct: 300 DLGVDIALRWGTGYDTTVRSFVNIIATPKGGTHVQGFEQGLLRAFSAGLEGTRILKSSEE 359

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RTVENALRDPFDHYLVQNP 412
           I+ DD++     +++V + EP+F GQTK  L +   +    R VE+ +          + 
Sbjct: 360 IVKDDVLEGMTAVVTVSLAEPQFEGQTKEVLGTPPVRRLVARIVEDKMTAFLTSAKAADK 419

Query: 413 IEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
             A  L+E V+  S  R+  R  +    RK A+    LP KL DC  +    TELFIVEG
Sbjct: 420 PVARALMEKVVNASRTRVAARAHKENQRRKNALESSHLPPKLKDCRSSDPDVTELFIVEG 479

Query: 472 DSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE 531
           DSA G+A  ARN  +QA+LP+RGKILNV  A    +  N +   ++Q +G  +   +  +
Sbjct: 480 DSALGTANVARNSEHQALLPIRGKILNVQKADLGAMLKNAECASIIQVVGAGSGKTFDLD 539

Query: 532 DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-----TQG- 585
             RY KVI M DAD DGAHI  LL T F++ M  ++E   +F   PPL R       +G 
Sbjct: 540 QARYGKVIFMADADSDGAHIRCLLATLFFRYMRPMVEAGRVFSAVPPLHRFELINPKRGM 599

Query: 586 TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645
            K +Y + +   Q+   +  K G    E  R+KGLGEM ASQLKET MD   RTL R+ +
Sbjct: 600 DKYLYTYTDAEYQRTAAQLAKKGVRFKEPQRYKGLGEMDASQLKETTMDPRHRTLRRITV 659

Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVGT 686
           +       + + +   LMG +   R +FI E A  +D   +  
Sbjct: 660 DD----AAEAEGTFEILMGNEVAPRKQFIVEGAYRLDAEQIDA 698


>gi|224369432|ref|YP_002603596.1| DNA topoisomerase IV subunit B [Desulfobacterium autotrophicum
           HRM2]
 gi|223692149|gb|ACN15432.1| ParE [Desulfobacterium autotrophicum HRM2]
          Length = 651

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 246/649 (37%), Positives = 362/649 (55%), Gaps = 32/649 (4%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y+A SI +L+GL+PVR RPGMY   TD  +  HL  EVIDN++DE IAG+AN I+V L  
Sbjct: 17  YNADSIEVLKGLDPVRRRPGMY---TDTTSPDHLAHEVIDNSVDEAIAGFANRIDVVLHA 73

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +  L V DNGRG+PV+ HP+    + +E+ILT LHAG KF N  Y  SGGLHGVG+SVVN
Sbjct: 74  DNCLEVGDNGRGMPVDIHPE-EGVTGVELILTRLHAGAKFSNKDYNFSGGLHGVGVSVVN 132

Query: 164 ALSDELHVTVARQNTIFSQKFSRG---IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           ALS  L V + R   +    F  G    PL+ ++   K  N  GT + F PD   F    
Sbjct: 133 ALSSYLEVNIQRGGALHRITFKNGYRDQPLTLVKSIGK--NNSGTNLKFYPDASYFDRPN 190

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L    ++KA L   +      ++         EK E+ F  GL+ YL   L   
Sbjct: 191 -FSKKALKHALKAKAVLCPGLMITLFIEE-------TGEKHEWQFEFGLRDYLTEALAGC 242

Query: 281 SLISSEIFTGK-TEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
             I    FTG  T ++ T    V+W            SY N I T  GGTH +G R  L 
Sbjct: 243 PTIFGSPFTGDITAEEATVAWAVDWTEERQAN--TCESYVNLIPTPLGGTHVNGFRSGLL 300

Query: 340 RGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             I+++ +      + +++  +D+  +   ILSV + + +F+GQTK +L S      V +
Sbjct: 301 ESIREFCKFRDILPKGVNLAPEDIWENIAFILSVKLVDAQFSGQTKERLSSRHCTVIVNS 360

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
           A++D F  +L QN     +L    ++ + ERL+  K ++V RK       LPGKL+DC+ 
Sbjct: 361 AVKDAFSLWLNQNTDFGERLANLAVDNARERLK--KAKKVTRKRITNGPALPGKLSDCTS 418

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
           +    +ELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S +I ++++I D+  
Sbjct: 419 SDPEKSELFLVEGDSAGGSAKQARDRRFQAIMPLKGKILNTWDTDSSQILSSKEIHDISV 478

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+G    S+     LRY K+ I+ DAD DG HIA+LL   F++   +++ + H+F+  PP
Sbjct: 479 AMGVDPDSEDI-SSLRYNKICILADADSDGLHIATLLCALFFRHFREVVRKGHIFMAMPP 537

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANK 637
           LFRI  G +  YA D+  ++ I++  +   K GKI + RFKGLGEM   QL+ET +  + 
Sbjct: 538 LFRIDVGKEVFYALDDPERESIIKRIQTKKKHGKINVQRFKGLGEMNPIQLRETTIAPDT 597

Query: 638 RTLLRVEINK--DLNSLKDTQ----DSINKLMGTK-ADERFKFIQERAS 679
           R L+++ I+K       +D +    + ++ L+G K A +R ++I+ + +
Sbjct: 598 RRLVQLVIDKEGADEDGQDAEKRVFEIMDMLLGKKRAPDRRRWIEAKGN 646


>gi|145594225|ref|YP_001158522.1| DNA topoisomerase type IIA subunit B region 2 domain-containing
           protein [Salinispora tropica CNB-440]
 gi|145303562|gb|ABP54144.1| DNA topoisomerase, type IIA, subunit B, region 2 domain protein
           [Salinispora tropica CNB-440]
          Length = 702

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 228/681 (33%), Positives = 342/681 (50%), Gaps = 52/681 (7%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y+A  +  LEGL+ VR RPGMYIG TD + + HL +E++DN+ DE +AG+A  IEV+L  
Sbjct: 26  YEADDLTHLEGLDAVRKRPGMYIGSTDSRGVGHLVNEILDNSTDEGVAGHATSIEVTLHA 85

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G + V D+GRGIP + H K    S +E++LT LHAGGKF  S Y+ SGGLHGVG S VN
Sbjct: 86  DGSVQVDDDGRGIPTDVHAK-SGISGVELVLTRLHAGGKFGGSGYKTSGGLHGVGASAVN 144

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPL--------------EKKEKVRNK--RGTRI 207
           ALS    VTV R   I +  F  G+P +                +    V+ +   GT I
Sbjct: 145 ALSRRFDVTVRRGGKIHTMSFRHGVPGTFDGDGPQAPFAAGPGLQVIGAVKRQQRTGTSI 204

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            +  DP+ F   A  DA  +    ++ A+L   V                P +E F++P 
Sbjct: 205 RYWYDPRYFEVGATLDADAVRMKLRNTAFLVPGVSYLLRD-----HTGAEPVEERFHYPN 259

Query: 268 GLKTYLQT---------------KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
           GL   +                   E     ++    G  +     R  VE A  W    
Sbjct: 260 GLTDMVDFLAPASDRPVSGTLLVCGEGAYRENAADANGVMQANVPRRAEVEVAFRWGTGY 319

Query: 313 PEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ---NKRAISIISDDLMISAVG 368
                 + NTI    GGTH  G   ALTR + +    T+     +      DD++     
Sbjct: 320 ERTVECFTNTIRNAHGGTHRKGFERALTRTLAEAIRNTRGLLKAKEDPPTLDDILEGLTA 379

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL--VQNPIEATKLLEWVIERS 426
           ++ V I EP+F  QTK +L +    + ++  +      +L   +   EA  +L+ + + +
Sbjct: 380 VVHVRIPEPQFTSQTKDELSTAGITKVLQRLVEQHLKAWLEERKTKTEARTVLQKIADAA 439

Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
             RL +++Q+E   RKTA+    +P KL DC       +E+FIVEGDSA G+A+ AR+  
Sbjct: 440 RVRLTQKQQKEAARRKTALEGASMPAKLVDCRSTGVERSEMFIVEGDSALGTARLARSSE 499

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545
            QA+LP+RGKILNV  A  +++ +N +   +VQ LG  +   +    +RY +V+IM DAD
Sbjct: 500 YQALLPIRGKILNVQKANLQQVLDNAECAAIVQVLGAGSGRTFDLSAVRYGRVLIMADAD 559

Query: 546 VDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT---KSVYAHDEEHKQKILE 602
           VDGAHI +LL+T F + M  LIE   L+   PPL +IT      +++Y + +E  +  + 
Sbjct: 560 VDGAHIRTLLITLFARYMRPLIEAGRLYAAMPPLHKITTKGRRPQTIYTYTQEEMEATVR 619

Query: 603 EFKKHGKGKIE-ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
             ++ GK  +  I RFKGLGEM A +L ET M+   R + R+ +       ++ +  +  
Sbjct: 620 RLEQAGKQIVTPIPRFKGLGEMDADELWETTMNPAGRAVRRITMED----AEEAERILEL 675

Query: 662 LMGTKADERFKFIQERASFID 682
           LMG K + R  ++   A  +D
Sbjct: 676 LMGEKVEPRRNWLIASADRVD 696


>gi|315093331|gb|EFT65307.1| DNA gyrase, B subunit [Propionibacterium acnes HL060PA1]
          Length = 719

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 235/720 (32%), Positives = 340/720 (47%), Gaps = 56/720 (7%)

Query: 18  GSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHL 77
            +S          +       S S  Y A ++ +LEGLE VR RP MYIG TD + L H 
Sbjct: 5   STSSANSSETPRGEGDTVRTASTSREYGAKNLLVLEGLEAVRKRPAMYIGSTDTRGLMHC 64

Query: 78  FSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137
             E+ DN +DE +AGY   I V+L+  G + V D GRGIPV+  P+    S LE++ T L
Sbjct: 65  LWEIFDNGVDEALAGYGRRITVTLEKAGSILVTDEGRGIPVDVEPR-TGLSGLEVVYTKL 123

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP-------- 189
           HAGGKF    Y +SGGLHGVG SVVNA+S  L V V R++T++   F RG+P        
Sbjct: 124 HAGGKFGGGAYNVSGGLHGVGASVVNAVSVRLDVEVDRKSTVWGMSFRRGVPGVFEGEGP 183

Query: 190 -------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
                      +  +  R   GTR+ + PD +IF   A    ++L    +  A+L   ++
Sbjct: 184 DAPFTPGSGVRKVGKAKRGVTGTRVRYWPDRQIFLPDAKLSWSKLADRARQTAFLVPGLE 243

Query: 243 TCWSCDKEIAEKYGIPEK-----EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE---- 293
              + ++ I       +      E   F GG+  + +    ++ + +     G+T     
Sbjct: 244 IVITDERGIQTDPETGDVLETVSETMRFDGGISEFAEYLATDQPVNNVMRLQGETSFTET 303

Query: 294 ------------KKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340
                               V+ A+ W         S+ N I T +GGTH  G    L R
Sbjct: 304 VPMLDENGGMTPTDVDRDLGVDIALRWGTGYDTTVRSFVNIIATPKGGTHVQGFEQGLLR 363

Query: 341 GIKK-YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RT 395
                       K +  I+ DD++     +++V + EP+F GQTK  L +   +    R 
Sbjct: 364 AFSAGLEGTRILKSSEEIVKDDVLEGMTAVVTVSLAEPQFEGQTKEVLGTPPVRRLVARI 423

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454
           VE+ +          +   A  L+E V+  S  R+  R  +    RK A+    LP KL 
Sbjct: 424 VEDKMTAFLTSAKAADKPVARALMEKVVNASRTRVAARAHKENQRRKNALESSHLPPKLK 483

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC  +    TELFIVEGDSA G+A  ARN  +QA+LP+RGKILNV  A    +  N +  
Sbjct: 484 DCRSSDPDVTELFIVEGDSALGTANVARNSEHQALLPIRGKILNVQKADLGAMLKNAECA 543

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++Q +G  +   +  + +RY KVI M DAD DGAHI  LL T F++ M  ++E   +F 
Sbjct: 544 SIIQVVGAGSGKTFDLDQVRYGKVIFMADADSDGAHIRCLLATLFFRYMRPMVEAGRVFS 603

Query: 575 ISPPLFRI-----TQG-TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             PPL R       +G  K +Y + +   Q+   +  K G    E  R+KGLGEM ASQL
Sbjct: 604 AVPPLHRFELINPKRGMDKYLYTYTDADYQRTAAQLAKKGVRFKEPQRYKGLGEMDASQL 663

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVGT 686
           KET MD   RTL R+ ++       + + +   LMG +   R +FI E A  +D   +  
Sbjct: 664 KETTMDPRHRTLRRITVDD----AAEAEGTFEILMGNEVAPRKQFIVEGAYRLDAEQIDA 719


>gi|261819374|ref|YP_003257480.1| DNA gyrase subunit B [Pectobacterium wasabiae WPP163]
 gi|261603387|gb|ACX85873.1| DNA gyrase, B subunit [Pectobacterium wasabiae WPP163]
          Length = 805

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 220/566 (38%), Positives = 344/566 (60%), Gaps = 17/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY   I +
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIII 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEE-EGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L + + R   +  Q +  G+  +PL    +  N+ GT + F P  + F + 
Sbjct: 121 SVVNALSEKLKLVIHRDGKLHEQIYKHGVAQAPLAVTGET-NRTGTTVRFWPSHETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V      ++E        + + +++ GG+K ++     N
Sbjct: 180 VEFEYEILAKRLRELSFLNSGVSIRLIDEREKD------KADHYHYDGGIKAFVDYLNRN 233

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   +F   T K       VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 234 KTPIHPNVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNTYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLAD 455
           E+ + +    YL++NP +A  ++  +I+ +  R   RK      RK A+    LPGKLAD
Sbjct: 351 ESLMNEKLVDYLMENPSDAKIVVGKIIDAARAREAARKARDMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY+++ +++E+ H+++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQLPEIVERGHVYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  D+E   + 
Sbjct: 531 AQPPLYKVKKGKQEQYIKDDEAMDQY 556



 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ LE   K  +  + + R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 720 FEQALEWLVKESRRGLSVQRYKGLGEMNPDQLWETTMDPTSRRMLRVTVKDAI----AAD 775

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           +    LMG   + R  FI+E A    ++ 
Sbjct: 776 ELFTTLMGDAVEPRRAFIEENALKAMNID 804


>gi|314923406|gb|EFS87237.1| DNA gyrase, B subunit [Propionibacterium acnes HL001PA1]
 gi|314966753|gb|EFT10852.1| DNA gyrase, B subunit [Propionibacterium acnes HL082PA2]
 gi|314981087|gb|EFT25181.1| DNA gyrase, B subunit [Propionibacterium acnes HL110PA3]
 gi|315091912|gb|EFT63888.1| DNA gyrase, B subunit [Propionibacterium acnes HL110PA4]
 gi|315103413|gb|EFT75389.1| DNA gyrase, B subunit [Propionibacterium acnes HL050PA2]
 gi|327327578|gb|EGE69354.1| DNA gyrase, B subunit [Propionibacterium acnes HL103PA1]
          Length = 719

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 235/720 (32%), Positives = 339/720 (47%), Gaps = 56/720 (7%)

Query: 18  GSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHL 77
            +S          +       S S  Y A ++ +LEGLE VR RP MYIG TD + L H 
Sbjct: 5   STSSANSSETPRGEGDTVRTASTSREYGAKNLLVLEGLEAVRKRPAMYIGSTDTRGLMHC 64

Query: 78  FSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137
             E+ DN +DE +AGY   I V+L+  G + V D GRGIPV+  P+    S LE++ T L
Sbjct: 65  LWEIFDNGVDEALAGYGRRITVTLEKAGSILVTDEGRGIPVDVEPR-TGLSGLEVVYTKL 123

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP-------- 189
           HAGGKF    Y +SGGLHGVG SVVNA+S  L V V R++T++   F RG+P        
Sbjct: 124 HAGGKFGGGAYNVSGGLHGVGASVVNAVSVRLDVEVDRKSTVWGMSFRRGVPGVFEGEGP 183

Query: 190 -------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
                      +  +  R   GTR+ + PD +IF   A    ++L    +  A+L   ++
Sbjct: 184 DAPFTPGSGVRKVGKAKRGVTGTRVRYWPDRQIFLPDAKLSWSKLADRARQTAFLVPGLE 243

Query: 243 TCWSCDKEIAEKYGIPEK-----EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE---- 293
              + ++ I       +      E   F GG+  + +    ++ + +     G+T     
Sbjct: 244 IVITDERGIQTDPETGDVLETVSETMRFDGGISEFAEYLATDQPVNNVMRLQGETSFTET 303

Query: 294 ------------KKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340
                               V+ A+ W         S+ N I T +GGTH  G    L R
Sbjct: 304 VPMLDENGGMTPTDVDRDLGVDIALRWGTGYDTTVRSFVNIIATPKGGTHVQGFEQGLLR 363

Query: 341 GIKK-YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RT 395
                       K +  I+ DD++     +++V + EP+F GQTK  L +   +    R 
Sbjct: 364 AFSAGLEGTRILKSSEEIVKDDVLEGMTAVVTVSLAEPQFEGQTKEVLGTPPVRRLVARI 423

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454
           VE+ +          +   A  L+E V+  S  R+  R  +    RK A+    LP KL 
Sbjct: 424 VEDKMTAFLTSAKAADKPVARALMEKVVNASRTRVAARAHKENQRRKNALESSHLPPKLK 483

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC  +    TELFIVEGDSA G+A  ARN  +QA+LP+RGKILNV  A    +  N +  
Sbjct: 484 DCRSSDPDVTELFIVEGDSALGTANVARNSEHQALLPIRGKILNVQKADLGAMLKNAECA 543

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++Q +G  +   +  +  RY KVI M DAD DGAHI  LL T F++ M  ++E   +F 
Sbjct: 544 SIIQVVGAGSGKTFDLDQARYGKVIFMADADSDGAHIRCLLATLFFRYMRPMVEAGRVFS 603

Query: 575 ISPPLFRI-----TQG-TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             PPL R       +G  K +Y + +   Q+   +  K G    E  R+KGLGEM ASQL
Sbjct: 604 AVPPLHRFELINPKRGMDKYLYTYTDADYQRTAAQLAKKGVRFKEPQRYKGLGEMDASQL 663

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVGT 686
           KET MD   RTL R+ ++       + + +   LMG +   R +FI E A  +D   +  
Sbjct: 664 KETTMDPRHRTLRRITVDD----AAEAEGTFEILMGNEVAPRKQFIVEGAYRLDAEQIDA 719


>gi|261380858|ref|ZP_05985431.1| DNA topoisomerase IV, B subunit [Neisseria subflava NJ9703]
 gi|284796328|gb|EFC51675.1| DNA topoisomerase IV, B subunit [Neisseria subflava NJ9703]
          Length = 661

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 243/672 (36%), Positives = 352/672 (52%), Gaps = 38/672 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ Y  SSI +L+GLEPV+ RPGMY   T   +  H+  EVIDNA DE + G+A  I+
Sbjct: 2   AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATAID 58

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154
           V +  +G L+V DNGRGIPV  HP+      +E++ T LHAGGKF+       Y  SGGL
Sbjct: 59  VQIHEDGSLSVRDNGRGIPVGLHPE-EGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213
           HGVG+SV NALS  L VTV R+  +    FS G  +  L +  K      GT +   PD 
Sbjct: 118 HGVGVSVTNALSTRLEVTVKREGKVHRIVFSGGNVIESLTEVGKCAVKDSGTEVRVWPDG 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     +    L ++ ++KA L   V+   +      +       + +++P GLK+YL
Sbjct: 178 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGENETYTQTWHYPDGLKSYL 233

Query: 274 QTKLENRSLISSEIFTGKTEKKGTH-----RGTVEWAIAWCEENPE-ITSYCNTILTDEG 327
              + +                G +          +A+ W EE      SY N I T  G
Sbjct: 234 TDLIADAQEAVPIFSCENYISDGHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293

Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           GTHE+GL+ A+   +  +  L     R + + SDD+      +LS  + +P+F GQTK K
Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRGVKVQSDDVFSKTAFVLSARVLDPQFQGQTKDK 353

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L + DA + V     DP + +L QN     K+ E  I +++ R+R    +++ +K     
Sbjct: 354 LTNRDALKLVATVSGDPLELWLNQNVDYGKKIAELAIRQAQARMRSV--KKIEKKKGSGV 411

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKL DC        ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN      ++
Sbjct: 412 AVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +  N +I D+  A+G          D   LRY K+ I++DADVDG+HI  LLLT FY+  
Sbjct: 472 LFGNAEIHDISVAIGVDPHGINDNPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531

Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614
             L+   H+++  PPLFR+    QG     +  YA D+     ILE  +K G  +    I
Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDSILERLQKEGVKETAYSI 591

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673
           SRFKGLGEM   QLK+T M  + R LL+V+I +  +   +T+D   KLMG  +A  R  +
Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETRDIFVKLMGKGEAAARRAW 649

Query: 674 IQERASFIDDVG 685
           +++     + + 
Sbjct: 650 MEKEGDTAE-LD 660


>gi|71893389|ref|YP_278835.1| topoisomerase IV subunit B [Mycoplasma hyopneumoniae J]
 gi|71851516|gb|AAZ44124.1| topoisomerase IV subunit B [Mycoplasma hyopneumoniae J]
          Length = 642

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 222/656 (33%), Positives = 349/656 (53%), Gaps = 35/656 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y    +++L+GLE VR RPGMYIG TD+  LH L  E+ DNA+DE IAG+AN I + ++
Sbjct: 2   TYSVEKLKLLKGLEAVRKRPGMYIGSTDKNGLHQLIWEIFDNAIDEAIAGFANEISLIIN 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  + + DNGRGIP E H K   K+ +E++ + LH+G KF    Y+ +GGLHGVG SVV
Sbjct: 62  SDNSIEISDNGRGIPTEIHKK-TGKTGVELVFSELHSGAKFSTDIYKTAGGLHGVGSSVV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS++L V + R   +F   F  G  +    K        GT+I F PD  +F   + F
Sbjct: 121 NALSEKLEVYINRDKKLFYTSFINGGKIETRTKIIGKSATTGTKIRFWPDFSLF-SHSEF 179

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D+  ++   +   +L   +K  +   K   EK        F    G++++++    ++  
Sbjct: 180 DSEMIISRLRETCFLINNLKINFFDTKNNIEKK-------FLCERGIESFIEFLNNDQEK 232

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRG 341
           I  ++ T    K+      VE+   +   +   I S+ N + T+ GG+HE+G +    + 
Sbjct: 233 IHDKVITF---KEKMQEIIVEFGFQYVNSQQENIISFVNNVKTNLGGSHENGFKSGFLKA 289

Query: 342 IKKYAELTQNKRAISIISDDL-MISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVEN 398
           I  Y +     +   I+      +    +LS+ I E   EF GQTK KL ++ A+   E 
Sbjct: 290 INTYGQQNNLLKTKQILEFSDAKVGLSAVLSLRIPESILEFVGQTKNKLSTILAKTVTEE 349

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR---KQREVNRKTAIRKLRLPGKLAD 455
            +      +   N   A+K++ +++E   +R + +    + + ++     K  L GKL  
Sbjct: 350 VIFTNLMTFFALNKEVASKIINFILETYTQRQKSKLSIIESKTSKSITKEKRILSGKLTP 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
            +   A   ELF+VEG+SAGGSAK ARNR  QA+LPL+GKI+N        +  N++I+ 
Sbjct: 410 ANSKKAMNRELFLVEGESAGGSAKLARNREFQAILPLKGKIVNAQKTRLIDLLKNEEIIA 469

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ ALG      +  ++L Y K+IIMTDAD DGAHI  L+LTF +  M  LIE+  +++ 
Sbjct: 470 IISALGTGIGQNFNLKNLNYGKIIIMTDADNDGAHIQILILTFLFLHMRPLIEKGFVYIA 529

Query: 576 SPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
            PPL+RI+ +G K +Y  DEE  +K ++         ++I R+KGLGEM A+QL +T MD
Sbjct: 530 QPPLYRISEKGRKDIYIWDEEKFEKYIK-----NSTNLQIQRYKGLGEMNANQLWQTTMD 584

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA------SFIDDV 684
             +RTL +V I          + +   LMG +AD R  +I++         FI+++
Sbjct: 585 PERRTLEKVLIENYPK----VEKNFQILMGERADLRKSWIEKNVNFSLEDKFIENL 636


>gi|238898809|ref|YP_002924491.1| DNA gyrase, subunit B (type II topoisomerase) [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229466569|gb|ACQ68343.1| DNA gyrase, subunit B (type II topoisomerase) [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 804

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 231/574 (40%), Positives = 347/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+ YD+S+I++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY   I V
Sbjct: 2   SNTYDSSNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDESLAGYCKKITV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            +  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  IIHEDNSVSVEDDGRGIPTGIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L +T++R+ +I  Q +  G P +PL+   K     GTR+ F P  K F ++
Sbjct: 121 SVVNALSEKLELTISREGSIHQQTYVMGEPQAPLKVMGKT-ELTGTRVRFWPSLKTFTNQ 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V  C    +   EK        F++ GG++ ++    +N
Sbjct: 180 TEFQYDILAKRLRELSFLNSGVFICLEDKRNDQEK-------HFHYEGGIQAFVTYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  ++F   T K       VE A+ W +     I  + N I   +GGTH  G R A+
Sbjct: 233 KTPIHPKVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y E      K  I+   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTMNSYMEKEGFSKKSKINATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 350 ETLMNEKLVEYLLENPSDAKTIVNKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +E+++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+  ++++  
Sbjct: 410 CQERDPALSEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASEEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDAD+DG+HI +LLLTFFY++M +LIE+ H+F+
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADIDGSHIRTLLLTFFYRQMPELIERGHIFI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D++  +K        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDDAMEKYQMSLALEG 563



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +L+V I   +       
Sbjct: 719 FEEALDWLMKESRRGLAIQRYKGLGEMNPGQLWETTMDPETRRMLQVRIKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRNFIEENALKAANID 803


>gi|317403447|gb|EFV83958.1| topoisomerase IV subunit B [Achromobacter xylosoxidans C54]
          Length = 653

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 248/671 (36%), Positives = 352/671 (52%), Gaps = 45/671 (6%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A+  Y+ +SIR+L+GLEPVR RPGMY   T  +   H+  EVIDNA DE +AG+   I V
Sbjct: 2   ATPRYNEASIRVLKGLEPVRQRPGMY---TRTENPLHIVQEVIDNAADEALAGHGKQILV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLHG 156
           +L  +G ++V D+GRGIPV  HP+  N   +E++ T LHAGGKFD      Y  SGGLHG
Sbjct: 59  TLHIDGSVSVEDDGRGIPVGLHPE-ENAPVVELVFTRLHAGGKFDKAGGGAYAFSGGLHG 117

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG---IPLSPLEKKEKVRNKRGTRITFRPDP 213
           VG+SV NAL+  L V V R   +    F  G    PL+P ++    R K GTR+   PD 
Sbjct: 118 VGVSVTNALATRLEVVVWRDGAVNRLVFKGGDVAEPLAPYDQGG--RKKSGTRVRVWPDA 175

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F          L  + +SKA L   VK     +K    K        + +  GL+ YL
Sbjct: 176 KYFDSPN-IPLGELTHLLRSKAVLLPGVKVSLVNEKTGDTKT-------WQYQDGLRGYL 227

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC------EENPEITSYCNTILTDEG 327
              L    L+    F G+      H    E   A        + N    SY N I T  G
Sbjct: 228 SEALAGAELMVP-FFEGQQYADADHETFAEGEGAQWVVAWTEDGNAVRESYVNLIPTPAG 286

Query: 328 GTHESGLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           GTHESGLR  L   +K +AE  +   + + ++ +D+   A  +LS  + +P+F GQ K +
Sbjct: 287 GTHESGLREGLFGAVKGFAELHSLLPKGVKLLPEDVFARASFVLSAKVLDPQFQGQIKER 346

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L S DA R V    +   D +L  N     KL E  I +++ R R    ++V ++ +   
Sbjct: 347 LNSRDAVRLVGGFAKSALDLWLHSNVEYGKKLAELAIRQAQARQR--SAQKVEKRKSSGV 404

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKL DC  + A  TE+F+VEGDSAGGSAK  R++  QA+LPLRGK+LN      ++
Sbjct: 405 AVLPGKLTDCESSDATRTEVFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNSWEVDRDR 464

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +  N +I D+  A+G          D   LRY ++ I++DADVDG+HI  LLLT FY+  
Sbjct: 465 LFANNEIHDISVAIGVDPHGPGDTPDLSGLRYGRICILSDADVDGSHIQVLLLTLFYKHF 524

Query: 564 YDLIEQKHLFLISPPLFRIT---QGT---KSVYAHDEEHKQKILEEFKKHG--KGKIEIS 615
             L+E  H+++  PPLFR+    QG    + +Y  DE   +   ++ +K G  +    +S
Sbjct: 525 PKLVEAGHVYVAKPPLFRLDVPAQGKRPARKIYCLDEGELEAAQDKLRKEGSRESSWAVS 584

Query: 616 RFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFI 674
           RFKGLGEM   QL ET M+ + R LL V       + +DT    + LMG  ++ +R  +I
Sbjct: 585 RFKGLGEMNPEQLWETTMNPDTRRLLPVGYGD--QTPEDTTRMFDMLMGKGESSQRRAWI 642

Query: 675 QERASFIDDVG 685
           +E+ +  + + 
Sbjct: 643 EEKGNLAE-LD 652


>gi|12045055|ref|NP_072865.1| DNA topoisomerase IV, B subunit [Mycoplasma genitalium G37]
 gi|1352716|sp|P47445|PARE_MYCGE RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|3844801|gb|AAC71421.1| DNA topoisomerase IV, B subunit [Mycoplasma genitalium G37]
 gi|166078913|gb|ABY79531.1| DNA topoisomerase IV, B subunit [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 633

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 234/653 (35%), Positives = 363/653 (55%), Gaps = 33/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY A++I+IL+GL+ V+ RPGMYIG TD K LHH+  E++ N++DEV+AGYA  I V+L
Sbjct: 3   SNYSATNIKILKGLDAVKKRPGMYIGSTDSKGLHHMLWEILANSVDEVLAGYATNITVTL 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           D N  +TV D+GRGIP E H +  N ST++ + T LHAGGKFD+ +Y+++GGLHGVG SV
Sbjct: 63  DLNNTITVSDDGRGIPYEIH-QDSNISTIDTVFTFLHAGGKFDDQSYKLAGGLHGVGASV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALSD L VTV R   I+   +  G  +    KK       GT ++F  DPK+F   A 
Sbjct: 122 VNALSDHLEVTVKRNGQIYQSVYQAGGKIIQKAKKIGDTTSHGTTVSFHADPKVFKK-AQ 180

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD+  +    +  ++L  ++K  ++  K         +   F+   GL  +L        
Sbjct: 181 FDSNIIKSRLKELSFLFAKLKLTFTDQK-------TNKTTVFFSTSGLVQFLDEINNTVE 233

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            +  +    K EK G     VE    + + +   I S+ N+I T EGG+HE+G  +A++ 
Sbjct: 234 TLG-QKTLIKGEKDGI---EVEVVFQFNQSDQETILSFANSIKTFEGGSHENGFCLAISD 289

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE--FAGQTKTKLVSLDAQRTV 396
            I  Y        ++  +    ++      I+ V + E    F GQTK+KL S + +  V
Sbjct: 290 VINSYCRKYNLLKEKDKNFQLSEIRQGLNAIIKVNLPEKNIAFEGQTKSKLFSKEVKNVV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLPGKLA 454
              ++  +  +L +N  +A  +++ ++   + + + ++QRE+ +  +   ++  L GKLA
Sbjct: 350 YELVQQHYFQFLERNNNDAKLIIDKLLNARKIKEQIKQQRELKKSLSSPQKEKILFGKLA 409

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK-IRNNQQI 513
            C        ELFIVEGDSAGG+AK  R+R  QA+LPLRGK+LNV    ++K    N++I
Sbjct: 410 PCQTKKTSEKELFIVEGDSAGGTAKMGRDRIFQAILPLRGKVLNVEKINNKKEAITNEEI 469

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
           + L+  +G    + +  +DL+Y K+IIMTDAD DGAHI  LLLTFFY+ M  LIE  H++
Sbjct: 470 LTLIFCIGTGILTNFNIKDLKYGKIIIMTDADNDGAHIQILLLTFFYRYMQPLIELGHVY 529

Query: 574 LISPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           L  PPL+++         Y   +   + +  +          + R+KGLGEM A QL +T
Sbjct: 530 LALPPLYKLETKDRKTVKYLWSDLELESVKLKLNN-----FTLQRYKGLGEMNADQLWDT 584

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF-IDD 683
            M+   R L++V+++  +N+ K      N  MG K+D R  +I+   +F +++
Sbjct: 585 TMNPTTRKLVQVKLDDLINAEKQI----NIFMGEKSDLRKHWIEANINFSVEN 633


>gi|50842524|ref|YP_055751.1| DNA topoisomerase IV subunit B [Propionibacterium acnes KPA171202]
 gi|289425254|ref|ZP_06427031.1| DNA gyrase, B subunit, C-terminal domain protein [Propionibacterium
           acnes SK187]
 gi|289427186|ref|ZP_06428902.1| DNA gyrase, B subunit, C-terminal domain protein [Propionibacterium
           acnes J165]
 gi|50840126|gb|AAT82793.1| DNA gyrase subunit B [Propionibacterium acnes KPA171202]
 gi|289154232|gb|EFD02920.1| DNA gyrase, B subunit, C-terminal domain protein [Propionibacterium
           acnes SK187]
 gi|289159655|gb|EFD07843.1| DNA gyrase, B subunit, C-terminal domain protein [Propionibacterium
           acnes J165]
          Length = 698

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 234/703 (33%), Positives = 336/703 (47%), Gaps = 56/703 (7%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
               S S  Y A ++ +LEGLE VR RP MYIG TD + L H   E+ DN +DE +AGY 
Sbjct: 1   MRTASTSREYGAKNLLVLEGLEAVRKRPAMYIGSTDTRGLMHCLWEIFDNGVDEALAGYG 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             I V+L+  G + V D GRGIPV+  P+    S LE++ T LHAGGKF    Y +SGGL
Sbjct: 61  RRITVTLEKAGSILVTDEGRGIPVDVEPR-TGLSGLEVVYTKLHAGGKFGGGAYNVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP---------------LSPLEKKEKV 199
           HGVG SVVNA+S  L V V R++T++   F RG+P                   +  +  
Sbjct: 120 HGVGASVVNAVSVRLDVEVDRKSTVWGMSFRRGVPGVFEGEGPDAPFTPGSGVRKVGKAK 179

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
           R   GTR+ + PD +IF   A    ++L    +  A+L   ++   + ++ I       +
Sbjct: 180 RGVTGTRVRYWPDRQIFLPDAKLSWSKLADRARQTAFLVPGLEIVITDERGIQTDPETGD 239

Query: 260 K-----EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTH 298
                 E   F GG+  + +    ++ + +     G+T                      
Sbjct: 240 VLETVSETMRFDGGISEFAEYLATDQPVNNVMRLQGETSFTETVPMLDENGGMTPTDVDR 299

Query: 299 RGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKK-YAELTQNKRAIS 356
              V+ A+ W         S+ N I T +GGTH  G    L R            K +  
Sbjct: 300 DLGVDIALRWGTGYDTTVRSFVNIIATPKGGTHVQGFEQGLLRAFSAGLEGTRILKSSEE 359

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RTVENALRDPFDHYLVQNP 412
           I+ DD++     +++V + EP+F GQTK  L +   +    R VE+ +          + 
Sbjct: 360 IVKDDVLEGMTAVVTVSLAEPQFEGQTKEVLGTPPVRRLVARIVEDKMTAFLTSAKAADK 419

Query: 413 IEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
             A  L+E V+  S  R+  R  +    RK A+    LP KL DC  +    TELFIVEG
Sbjct: 420 PVARALMEKVVNASRTRVAARAHKENQRRKNALESSHLPPKLKDCRSSDPDVTELFIVEG 479

Query: 472 DSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE 531
           DSA G+A  ARN  +QA+LP+RGKILNV  A    +  N +   ++Q +G  +   +  +
Sbjct: 480 DSALGTANVARNSEHQALLPIRGKILNVQKADLGAMLKNAECASIIQVVGAGSGKTFDLD 539

Query: 532 DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-----TQG- 585
             RY KVI M DAD DGAHI  LL T F++ M  ++E   +F   PPL R       +G 
Sbjct: 540 QARYGKVIFMADADSDGAHIRCLLATLFFRYMRPMVEAGRVFSAVPPLHRFELINPKRGM 599

Query: 586 TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645
            K +Y + +   Q+   +  K G    E  R+KGLGEM ASQLKET MD   RTL R+ +
Sbjct: 600 DKYLYTYTDAEYQRTAAQLAKKGVRFKEPQRYKGLGEMDASQLKETTMDPRHRTLRRITV 659

Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVGT 686
           +       + + +   LMG +   R +FI E A  +D   +  
Sbjct: 660 DD----AAEAEGTFEILMGNEVAPRKQFIVEGAYRLDAEQIDA 698


>gi|293604498|ref|ZP_06686903.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Achromobacter piechaudii
           ATCC 43553]
 gi|292817079|gb|EFF76155.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Achromobacter piechaudii
           ATCC 43553]
          Length = 653

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 249/670 (37%), Positives = 354/670 (52%), Gaps = 43/670 (6%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A+  Y  +SIR+L+GLEPVR RPGMY   T  +   H+  EVIDNA DE +AGY   I+V
Sbjct: 2   ATPRYTEASIRVLKGLEPVRQRPGMY---TRTENPLHVVQEVIDNAADEALAGYGKQIQV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLHG 156
           +L  +G ++V D+GRGIPV  HP+      +E++ T LHAGGKFD      Y  SGGLHG
Sbjct: 59  TLHSDGSVSVEDDGRGIPVGLHPE-EGAPVVELVFTRLHAGGKFDKAGGGAYAFSGGLHG 117

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG---IPLSPLEKKEKVRNKRGTRITFRPDP 213
           VG+SV NAL+  L V V R   +    F  G    PL+P E     R K GTR+   PD 
Sbjct: 118 VGVSVTNALATRLEVVVWRDGAVNRLVFKGGDVAEPLAPYEAGG--RKKSGTRVRVWPDA 175

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F          L  + +SKA L   VK     +K    K        + +  GL+ YL
Sbjct: 176 KYFDSPN-IPLGELTHLLRSKAVLLPGVKVTLVNEKTGDTKT-------WQYQDGLRGYL 227

Query: 274 QTKLENRSLISS----EIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGG 328
              L    L+      + + G   +        +W +AW E+      SY N I T  GG
Sbjct: 228 AEALTGAELMVPFFEGQQYAGADHENFAEGEGAQWVVAWTEDGNAVRESYVNLIPTPAGG 287

Query: 329 THESGLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           THESGLR  L   +K +AE  +   + + ++ +D+   A  +LS  + +P+F GQ K +L
Sbjct: 288 THESGLREGLFGAVKGFAELHSLLPKGVKLLPEDVFARASFVLSAKVLDPQFQGQIKERL 347

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL 447
            S DA R V    +   D +L  N     KL E  I +++ R R    ++V ++ +    
Sbjct: 348 NSRDAVRLVGGFSKSALDLWLHSNVEYGKKLAELAIRQAQARQR--SAQKVEKRKSSGVA 405

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKL DC  + A  TE+F+VEGDSAGGSAK  R++  QA+LPLRGK+LN      +++
Sbjct: 406 VLPGKLTDCESSDASRTEVFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNSWEVDRDRL 465

Query: 508 RNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
             N +I D+  A+G          D   LRY ++ I++DADVDG+HI  LLLT FY+   
Sbjct: 466 FANNEIHDISVAIGVDPHGPNDTPDLSGLRYGRICILSDADVDGSHIQVLLLTLFYKHFP 525

Query: 565 DLIEQKHLFLISPPLFRIT---QGT---KSVYAHDEEHKQKILEEFKKHG--KGKIEISR 616
            L+E  ++F+  PPLFR+    QG    + +Y  DE   +   ++ +K G  +G   +SR
Sbjct: 526 KLVEAGNVFVAKPPLFRLDVPAQGKRPARKIYCLDEGELEAAQDKLRKEGVREGAWAVSR 585

Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQ 675
           FKGLGEM   QL ET M+ + R LL V       + +DT    + LMG  ++ +R  +I+
Sbjct: 586 FKGLGEMNPEQLWETTMNPDTRRLLPVGYGD--QTPEDTTRMFDMLMGKGESSQRRAWIE 643

Query: 676 ERASFIDDVG 685
           E+ +  + + 
Sbjct: 644 EKGNLAE-LD 652


>gi|237748747|ref|ZP_04579227.1| topoisomerase IV subunit B [Oxalobacter formigenes OXCC13]
 gi|229380109|gb|EEO30200.1| topoisomerase IV subunit B [Oxalobacter formigenes OXCC13]
          Length = 659

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 250/669 (37%), Positives = 365/669 (54%), Gaps = 42/669 (6%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
              +Y  +SI++L+GLEPVR RPGMY   T  +   H+ +EVIDNA DE I GY   I V
Sbjct: 4   KETSYSEASIKVLKGLEPVRQRPGMY---TRTENPLHIITEVIDNASDEAIGGYCKNINV 60

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD---NSTYEISGGLHG 156
           +L+ +G ++V D+GRGIPV  HP+     T+EI+ T LH+GGKF    ++ Y  SGGLHG
Sbjct: 61  TLNADGSVSVEDDGRGIPVGMHPE-EKVPTVEIVFTRLHSGGKFTKGGDNAYAFSGGLHG 119

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDPK 214
           VG+SV NALS  + VTV R+  +    F+ G    PL  +   R   K GT++T  PD  
Sbjct: 120 VGVSVTNALSKRIEVTVWREKEVHQIAFTDGEVTEPLTSRPIARGEKKSGTKVTVWPDA- 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
            + D      A L  + +SKA L   V      +K         E E +++  GL+ YL 
Sbjct: 179 RYFDSMTIPLAELKHLLRSKAILLPGVHVELQNEK-------TNETETWHYENGLRGYLS 231

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGT-------VEWAIAWCEENP-EITSYCNTILTDE 326
            +LE  +     I   + E    H            W +AW  E P    S+ N I T  
Sbjct: 232 QELELTTGEEIVIPLFEGELYADHDNEGFASGEGAAWVVAWTTEGPLIRESFVNLIPTTA 291

Query: 327 GGTHESGLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GGTHESGLR  L   +K + E  +   + + ++ +D+      +LS  + +P+F GQ K 
Sbjct: 292 GGTHESGLRDGLFNAVKSFTEIHSLLPKGVRLLPEDVFARVSFVLSAKVLDPQFQGQIKE 351

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIR 445
           +L S DA R V + ++  F+ +L QN     KL E VI++++ R+R+ ++ E  + +A+ 
Sbjct: 352 RLNSRDAVRLVSHFVKPAFETWLHQNVEYGRKLAELVIKQAQSRMRQLQKVEKKKSSAVA 411

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
            L  PGKL DC  +     ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN      +
Sbjct: 412 VL--PGKLTDCESHDISRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNSWETEKD 469

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
           ++  NQ+I D+  A+G    +   + D   LRY K+ I++DADVDG+HI  LLLT F++ 
Sbjct: 470 RLFANQEIHDISVAIGVDPHTPADDPDLSGLRYGKICILSDADVDGSHIQVLLLTLFFRH 529

Query: 563 MYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHGKG--KIEI 614
              LIE  ++ +  PPL+RI    +G K    +YA D+     ILE+ K  G     + I
Sbjct: 530 FPKLIENGNICVARPPLYRIDAPARGKKPMQKLYALDDSELNGILEKLKSEGIKDNALGI 589

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673
           SRFKGLGEM A QL ET ++ + R LL +     + S  ++++    LMG  +A  R  +
Sbjct: 590 SRFKGLGEMNAEQLWETTLNPDTRRLLPITF--GIFSRNESEERFQMLMGKGEAAARRNW 647

Query: 674 IQERASFID 682
           ++E  +  +
Sbjct: 648 MEEHGNEAE 656


>gi|194099098|ref|YP_002002183.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae NCCP11945]
 gi|239999404|ref|ZP_04719328.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae 35/02]
 gi|240014581|ref|ZP_04721494.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae DGI18]
 gi|240017026|ref|ZP_04723566.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae FA6140]
 gi|240081338|ref|ZP_04725881.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae FA19]
 gi|240113547|ref|ZP_04728037.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae MS11]
 gi|240118387|ref|ZP_04732449.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae PID1]
 gi|240121103|ref|ZP_04734065.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae PID24-1]
 gi|240123932|ref|ZP_04736888.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae PID332]
 gi|240126132|ref|ZP_04739018.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae SK-92-679]
 gi|240128609|ref|ZP_04741270.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae SK-93-1035]
 gi|268595224|ref|ZP_06129391.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae 35/02]
 gi|268597440|ref|ZP_06131607.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae FA19]
 gi|268599612|ref|ZP_06133779.1| topoisomerase IV subunit B [Neisseria gonorrhoeae MS11]
 gi|268604099|ref|ZP_06138266.1| topoisomerase IV subunit B [Neisseria gonorrhoeae PID1]
 gi|268682557|ref|ZP_06149419.1| topoisomerase IV subunit B [Neisseria gonorrhoeae PID332]
 gi|268684718|ref|ZP_06151580.1| topoisomerase IV subunit B [Neisseria gonorrhoeae SK-92-679]
 gi|268686997|ref|ZP_06153859.1| topoisomerase IV subunit B [Neisseria gonorrhoeae SK-93-1035]
 gi|293398679|ref|ZP_06642857.1| topoisomerase IV subunit B [Neisseria gonorrhoeae F62]
 gi|193934388|gb|ACF30212.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae NCCP11945]
 gi|268548613|gb|EEZ44031.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae 35/02]
 gi|268551228|gb|EEZ46247.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae FA19]
 gi|268583743|gb|EEZ48419.1| topoisomerase IV subunit B [Neisseria gonorrhoeae MS11]
 gi|268588230|gb|EEZ52906.1| topoisomerase IV subunit B [Neisseria gonorrhoeae PID1]
 gi|268622841|gb|EEZ55241.1| topoisomerase IV subunit B [Neisseria gonorrhoeae PID332]
 gi|268625002|gb|EEZ57402.1| topoisomerase IV subunit B [Neisseria gonorrhoeae SK-92-679]
 gi|268627281|gb|EEZ59681.1| topoisomerase IV subunit B [Neisseria gonorrhoeae SK-93-1035]
 gi|291611150|gb|EFF40247.1| topoisomerase IV subunit B [Neisseria gonorrhoeae F62]
 gi|317164652|gb|ADV08193.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 661

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 242/672 (36%), Positives = 351/672 (52%), Gaps = 38/672 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ Y  SSI +L+GLEPV+ RPGMY   T   +  H+  EVIDNA DE + G+A  I+
Sbjct: 2   AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATEID 58

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154
           V +  +G L+V DNGRGIPV  HP+      +E++ T LHAGGKF+       Y  SGGL
Sbjct: 59  VQIHEDGSLSVRDNGRGIPVGLHPE-EGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213
           HGVG+SV NALS  L V+V R   +    F+ G  + PL +  K      GT +   PD 
Sbjct: 118 HGVGVSVTNALSTRLEVSVKRDGKVHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRVWPDG 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     +    L ++ ++KA L   V+   +      +       + +++P GLK+YL
Sbjct: 178 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEAHTQTWHYPDGLKSYL 233

Query: 274 QTKLENRSLISSEIFTGKTEKKGTH-----RGTVEWAIAWCEENPE-ITSYCNTILTDEG 327
              + +                G +          +A+ W EE      SY N I T  G
Sbjct: 234 TDLIADAQEAVPLFSCENYISDGHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTSLG 293

Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           GTHE+GL+ A+   +  +  L     R + + SDD+      +LS  + +P+F GQTK K
Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRGVKVQSDDVFGKTAFVLSARVLDPQFQGQTKDK 353

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L + DA + V     DP + +L QN     K+ E  I +++ R+R    +++ +K     
Sbjct: 354 LTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARIRSV--KKIEKKKGSGV 411

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKL DC        ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN      ++
Sbjct: 412 AILPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +  N +I D+  A+G    +     D   LRY K+ I++DADVDG+HI  LLLT FY+  
Sbjct: 472 LFGNAEIHDISVAIGVDPHAINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531

Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614
             L+   H+++  PPLFR+    QG     +  YA D+     ILE  +K G  +    I
Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDGILERLQKEGVKETAYSI 591

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673
           SRFKGLGEM   QLK+T M  + R LL+V+I +  +   +T+D   KLMG  +A  R  +
Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETRDIFVKLMGKGEAAARRAW 649

Query: 674 IQERASFIDDVG 685
           ++        + 
Sbjct: 650 MEREGDTA-QLD 660


>gi|77165746|ref|YP_344271.1| DNA topoisomerase IV subunit B [Nitrosococcus oceani ATCC 19707]
 gi|254433384|ref|ZP_05046892.1| DNA topoisomerase IV, B subunit [Nitrosococcus oceani AFC27]
 gi|76884060|gb|ABA58741.1| DNA topoisomerase IV subunit B [Nitrosococcus oceani ATCC 19707]
 gi|207089717|gb|EDZ66988.1| DNA topoisomerase IV, B subunit [Nitrosococcus oceani AFC27]
          Length = 628

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 249/624 (39%), Positives = 354/624 (56%), Gaps = 23/624 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S NYDA++I +L GL+PVR RPGMY   TD +  +HL  EVIDN++DE IAG+A  I+V 
Sbjct: 2   SGNYDAAAIEVLTGLDPVRKRPGMY---TDTQRPNHLAQEVIDNSVDEAIAGFATQIDVV 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +G LTV D+GRG+PV+ HP+      +E+ILT LHAGGKF + +Y  +GGLHGVG+S
Sbjct: 59  LQPDGSLTVCDDGRGMPVDLHPE-ERLPGVEVILTRLHAGGKFSSKSYRFAGGLHGVGVS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  L V V R+   +   F+ G  +S L+   KV +   GT + F PDP +F D 
Sbjct: 118 VVNALSSRLEVWVRREGCEYHIAFANGERVSALKAINKVGKRNTGTVLRFWPDP-VFFDT 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  ARL  + ++KA L   +   +S            E   + +  GL  YL+ +L  
Sbjct: 177 PKFAVARLKHILRAKAVLCPGLCVTFSD-------VATGETVNWRYQEGLLAYLRDELRE 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
            S +    FTG+ +        V WA  W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LSYLPDPPFTGEMQGNTE---EVCWAFTWLPEGGEVVTESYVNLIPTPQGGTHVNGLRAG 286

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           +   ++++ E      + + +  DD+      +LSV + +P+F+GQTK +L S +    V
Sbjct: 287 MLEAVREFCEFRNLLPKGVKLAPDDVWDRVSYVLSVKLLDPQFSGQTKERLSSRECASFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L Q+ +    + E  I  ++ RLR  + ++V RK       LPGKLADC
Sbjct: 347 SGVVKDSFSLWLNQHVVTGETIAELAIGNAQRRLR--QAKKVVRKRIQAGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +      TELF+VEGDSAGGSAKQ R+R  QA++PLRGKILN     S ++  +Q++ ++
Sbjct: 405 TSQEVSLTELFLVEGDSAGGSAKQGRDRVFQAIMPLRGKILNTWEIDSAQVLASQEVHNI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             ALG    S    + LRY K+ I+ DAD DGAHIA+LL   F++    L+E  H+++  
Sbjct: 465 AVALGVDPGSDKL-DSLRYGKICILADADSDGAHIAALLSALFFRHFRPLVEAGHIYVAM 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDA 635
           PPL+RI  G +  YA DE  +Q +L+       KGKI I RFKGLGEM   QL+ET M  
Sbjct: 524 PPLYRIDVGKRVFYALDEAERQGVLDRIAAERIKGKINIQRFKGLGEMNPMQLRETTMAP 583

Query: 636 NKRTLLRVEINKDLNSLKDTQDSI 659
             R L+R+ +  + +  +     +
Sbjct: 584 ETRRLVRLTVTPNDDPDQLLDRLL 607


>gi|72080376|ref|YP_287434.1| topoisomerase IV subunit B [Mycoplasma hyopneumoniae 7448]
 gi|71913500|gb|AAZ53411.1| topoisomerase IV subunit B [Mycoplasma hyopneumoniae 7448]
          Length = 642

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 223/656 (33%), Positives = 349/656 (53%), Gaps = 35/656 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y    +++L GLE VR RPGMYIG TD+  LH L  E+ DNA+DE IAG+AN I + ++
Sbjct: 2   TYSVEKLKLLRGLEAVRKRPGMYIGSTDKNGLHQLIWEIFDNAIDEAIAGFANEISLIIN 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  + + DNGRGIP E H K   K+ +E++ + LH+G KF    Y+ +GGLHGVG SVV
Sbjct: 62  SDNSIEISDNGRGIPTEIHKK-TGKTGVELVFSELHSGAKFSTDIYKTAGGLHGVGSSVV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS++L V + R   +F   F  G  +    K        GT+I F PD  +F   + F
Sbjct: 121 NALSEKLEVYINRDKKLFYTSFINGGKIETRTKIIGKSTTTGTKIRFWPDFSLF-SHSEF 179

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D+  ++   +   +L   +K  +   K   EK        F    G++++++    ++  
Sbjct: 180 DSEMIISRLRETCFLVNNLKINFFDTKNNIEKK-------FLCERGIESFIEFLNNDQEK 232

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRG 341
           I  +I T    K+      VE+   +   +   I S+ N + T+ GG+HE+G +    + 
Sbjct: 233 IHDKIITF---KEKMQEIIVEFGFQYVNSQQENIISFVNNVKTNLGGSHENGFKSGFLKA 289

Query: 342 IKKYAELTQNKRAISIISDDL-MISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVEN 398
           I  Y +     +   I+      +    +LS+ I E   EF GQTK KL ++ A+   E 
Sbjct: 290 INTYGQQNNLLKTKQILEFSDAKVGLSAVLSLRIPESILEFVGQTKNKLSTILAKTVTEE 349

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR---KQREVNRKTAIRKLRLPGKLAD 455
            +      +   N   A+K++ +++E   +R + +    + + ++     K  L GKL  
Sbjct: 350 VIFTNLMTFFALNKEVASKIINFILETYTQRQKSKLSIIESKTSKSITKEKRILSGKLTP 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
            +   A   ELF+VEG+SAGGSAK ARNR  QA+LPL+GKI+N        +  N++I+ 
Sbjct: 410 ANSKKAMNRELFLVEGESAGGSAKLARNREFQAILPLKGKIVNAQKTRLIDLLKNEEIIA 469

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ ALG      +  ++L Y K+IIMTDAD DGAHI  L+LTF +  M  LIE+  +++ 
Sbjct: 470 IISALGTGIGQNFNLKNLNYGKIIIMTDADNDGAHIQILILTFLFLHMRPLIEKGFVYIA 529

Query: 576 SPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
            PPL+RI+ +G K +Y  DEE  +K ++         ++I R+KGLGEM A+QL +T MD
Sbjct: 530 QPPLYRISEKGRKDIYIWDEEKFEKYIK-----NSTNLQIQRYKGLGEMNANQLWQTTMD 584

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA------SFIDDV 684
             +RTL +V I          +++   LMG +AD R  +I++         FI+++
Sbjct: 585 PERRTLEKVLIENYPK----VEENFQILMGERADLRKSWIEKNVDFSLEDKFIENL 636


>gi|308047726|ref|YP_003911292.1| DNA gyrase subunit B [Ferrimonas balearica DSM 9799]
 gi|307629916|gb|ADN74218.1| DNA gyrase subunit B [Ferrimonas balearica DSM 9799]
          Length = 805

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 230/575 (40%), Positives = 352/575 (61%), Gaps = 18/575 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
           A ++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I 
Sbjct: 2   AENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDIV 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +G ++V D+GRGIPV+ HP+    S  ++I+T LHAGGKFD+++Y++SGGLHGVG
Sbjct: 62  VTIHADGSVSVQDDGRGIPVDMHPE-EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALSD+L +TV RQ  I  Q++S G P++PL+      +K GT I F P  +IF D
Sbjct: 121 VSVVNALSDKLELTVRRQGHIHEQEYSLGDPVAPLKAVGDT-DKTGTTIRFWPSSQIFSD 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      +++  E       + + + GG+  +++   +
Sbjct: 180 TT-FHYDILAKRLRELSFLNSGVSIRLVDERDAKE-------DHYCYEGGIHAFVEFLNQ 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ +  ++F    E++      VE A+ W +     I  + N I   +GGTH +G R A
Sbjct: 232 NKTPVHQQVFHFTIERED--GIGVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAA 289

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y +      K   S   DD       ++SV + +P+F+ QTK KLVS + +  
Sbjct: 290 LTRTLNNYMDKEGYSKKAKTSASGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTA 349

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454
           VE  + +    +L++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLA
Sbjct: 350 VEQTMGEQLQDFLLENPGDAKTVVSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLA 409

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL+IVEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++ 
Sbjct: 410 DCQEKDPALSELYIVEGDSAGGSAKQGRNRKYQAILPLKGKILNVEKARFDKMLSSQEVA 469

Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            L+ A+GC   R +Y  +  RY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ +++
Sbjct: 470 TLITAMGCGIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIY 529

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +  PPL+++ +G +  Y  DE    + L       
Sbjct: 530 IAQPPLYKVKKGKQERYIKDEAALTEYLTSLALDN 564



 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            +K L       K  + I R+KGLGEM   QL ET MD   R +LRV I   +       
Sbjct: 720 FEKGLTWLMNESKRGLYIQRYKGLGEMNPDQLWETTMDPETRRMLRVTIEDAIG----AD 775

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG + + R  FI++ A  + ++ 
Sbjct: 776 QLFTTLMGDQVEPRRDFIEKNALLVANLD 804


>gi|59801683|ref|YP_208395.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae FA 1090]
 gi|59718578|gb|AAW89983.1| putative DNA topoisomerase IV subunit B [Neisseria gonorrhoeae FA
           1090]
          Length = 661

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 242/672 (36%), Positives = 351/672 (52%), Gaps = 38/672 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ Y  SSI +L+GLEPV+ RPGMY   T   +  H+  EVIDNA DE + G+A  I+
Sbjct: 2   AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATEID 58

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154
           V +  +G L+V DNGRGIPV  HP+      +E++ T LHAGGKF+       Y  SGGL
Sbjct: 59  VQIHEDGSLSVRDNGRGIPVGLHPE-EGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213
           HGVG+SV NALS  L V+V R   +    F+ G  + PL +  K      GT +   PD 
Sbjct: 118 HGVGVSVTNALSTRLEVSVKRDGKVHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRVWPDG 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     +    L ++ ++KA L   V+   +      +       + +++P GLK+YL
Sbjct: 178 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEAHTQTWHYPDGLKSYL 233

Query: 274 QTKLENRSLISSEIFTGKTEKKGTH-----RGTVEWAIAWCEENPE-ITSYCNTILTDEG 327
              + +                G +          +A+ W EE      SY N I T  G
Sbjct: 234 TDLIADAQEAVPLFSCENYISDGHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTSLG 293

Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           GTHE+GL+ A+   +  +  L     R + + SDD+      +LS  + +P+F GQTK K
Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRGVKVQSDDVFGKTAFVLSARVLDPQFQGQTKDK 353

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L + DA + V     DP + +L QN     K+ E  I +++ R+R    +++ +K     
Sbjct: 354 LTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARIRSV--KKIEKKKGSGV 411

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKL DC        ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN      ++
Sbjct: 412 AILPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +  N +I D+  A+G    +     D   LRY K+ I++DADVDG+HI  LLLT FY+  
Sbjct: 472 LFGNAEIHDISVAVGVDPHAINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531

Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614
             L+   H+++  PPLFR+    QG     +  YA D+     ILE  +K G  +    I
Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDGILERLQKEGVKETAYSI 591

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673
           SRFKGLGEM   QLK+T M  + R LL+V+I +  +   +T+D   KLMG  +A  R  +
Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETRDIFVKLMGKGEAAARRAW 649

Query: 674 IQERASFIDDVG 685
           ++        + 
Sbjct: 650 MEREGDTA-QLD 660


>gi|262273133|ref|ZP_06050950.1| DNA gyrase subunit B [Grimontia hollisae CIP 101886]
 gi|262222889|gb|EEY74197.1| DNA gyrase subunit B [Grimontia hollisae CIP 101886]
          Length = 805

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 228/566 (40%), Positives = 352/566 (62%), Gaps = 17/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ N I V
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCNDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +G ++V D+GRGIPV+ H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDGSVSVKDDGRGIPVDIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L +T+ R   +  Q +  G+P  PLE      ++ GTRI F P  + F D 
Sbjct: 121 SVVNALSEKLELTIWRHGHVHQQIYRMGVPEKPLEVIGDT-DETGTRIRFWPSDETFSDT 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V      ++E        + + F + GG++ +++    N
Sbjct: 180 T-FHYDILAKRLRELSFLNSGVSIKLIDERE------ENKHDHFMYEGGIRAFVEHLNRN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   +F  + E++     +VE ++ W +     I  + N I   +GGTH +G R AL
Sbjct: 233 KTPIHPTVFHFEHERED--GVSVEVSMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAL 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNNFMDKEGYSKKAKAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+A+ +    +L++NP ++  +   +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 351 ESAMGEKLAEFLIENPQDSKIVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  D+E  ++ 
Sbjct: 531 AQPPLYKVKKGKQEQYIKDDEAMEQY 556



 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G +             L    K     +   R+KGLGEM   QL ET MD   R ++
Sbjct: 708 IQRGERKQPVKS---FADALAWLIKESNRGLTRQRYKGLGEMNPDQLWETTMDPESRRMM 764

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           RV I   +       +    LMG   + R  FI++ A  + ++ 
Sbjct: 765 RVTIQDAV----AADELFTTLMGDHVEPRRAFIEDNALKVANLD 804


>gi|325144924|gb|EGC67208.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis M01-240013]
 gi|325205601|gb|ADZ01054.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis M04-240196]
          Length = 661

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 244/672 (36%), Positives = 352/672 (52%), Gaps = 38/672 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ Y  SSI +L+GLEPV+ RPGMY   T   +  H+  EVIDNA DE + G+A  I+
Sbjct: 2   AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATAID 58

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154
           V +  +G L+V DNGRGIPV  HP+      +E++ T LHAGGKF+       Y  SGGL
Sbjct: 59  VQIHEDGSLSVRDNGRGIPVGLHPE-EGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213
           HGVG+SV NALS  L VTV R+  I    F+ G  + PL +  K      GT +   PD 
Sbjct: 118 HGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRVWPDG 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     +    L ++ ++KA L   V+   +      +       + +++P GLK+YL
Sbjct: 178 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEAHTQTWHYPDGLKSYL 233

Query: 274 QTKLENRSLISSEIFTGKTEKKGTH-----RGTVEWAIAWCEENPE-ITSYCNTILTDEG 327
              + +                G +          +A+ W EE      SY N I T  G
Sbjct: 234 TDLIADAQEAVPLFSCENYISDGHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293

Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           GTHE+GL+ A+   +  +  L     R + + SDD+      +LS  + +P+F GQTK K
Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRGVKVQSDDVFGKTAFVLSARVLDPQFQGQTKDK 353

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L + DA + V     DP + +L QN     K+ E  I +++ R+R    +++ +K     
Sbjct: 354 LTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSV--KKIEKKKGSGV 411

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKL DC        ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN      ++
Sbjct: 412 AVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +  N +I D+  A+G          D   LRY K+ I++DADVDG+HI  LLLT FY+  
Sbjct: 472 LFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531

Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614
             L+   H+++  PPLFR+    QG     +  YA D+     ILE  +K G  +    I
Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDSILERLQKEGVKETAYSI 591

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673
           SRFKGLGEM   QLK+T M  + R LL+V+I +  +   +T+D   KLMG  +A  R  +
Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETRDIFVKLMGKGEAAARRAW 649

Query: 674 IQERASFIDDVG 685
           ++      + + 
Sbjct: 650 MEREGDTAE-LD 660


>gi|262377153|ref|ZP_06070378.1| DNA topoisomerase IV, B subunit [Acinetobacter lwoffii SH145]
 gi|262307891|gb|EEY89029.1| DNA topoisomerase IV, B subunit [Acinetobacter lwoffii SH145]
          Length = 626

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 256/646 (39%), Positives = 375/646 (58%), Gaps = 29/646 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y A S+ +L GL+PVR RPGMY   TD    +HL  EVIDNA+DE +AG+AN I V++
Sbjct: 2   SQYTAQSLEVLSGLDPVRRRPGMY---TDTSRPNHLAQEVIDNAVDEALAGHANKITVTV 58

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G L+V DNGRG+PV+ HP++  +S +EII+T LHAGGKF    Y+ SGGLHGVGISV
Sbjct: 59  YKDGSLSVEDNGRGMPVDIHPEY-GQSGIEIIMTKLHAGGKFSTDNYQFSGGLHGVGISV 117

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK--KEKVRNKRGTRITFRPDPKIFGDK 219
           VNALS  + V V RQ  ++   F  G P++PLE    +  +   GT + F P+ K F   
Sbjct: 118 VNALSTRVEVEVQRQGNLYKMAFENGEPVAPLEVLAGKAPKRVSGTTVQFWPEAKYFDSP 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L    ++KA L+  ++  +             EK  + F  GL  YL  +LE+
Sbjct: 178 -KFALKALKHNLKAKAVLAAGLQINYVDQ-------INDEKITWQFENGLVDYLMDELED 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
           R +I +  F    + +   R + E+AI W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 REIIPAPAFVATGDAE---RASAEFAICWNVEGGESVQESYVNLIPTAQGGTHVNGLRSG 286

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           +T  ++++ EL     R + + ++D+      ILS+  +EP+F+GQTK +L S +A   V
Sbjct: 287 VTDAMREFCELRNLLPRNMKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREAAGIV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +N  +D F  +L QN   A +L E  I ++  RL+    ++V RK  +    LPGKL+DC
Sbjct: 347 QNIAKDAFALWLNQNSDIAMQLAEMAISKAGRRLK--AAKKVERKKIVAGPTLPGKLSDC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
             +    +ELFIVEGDSAGGSAKQAR+++ QA++P+RGKILN     S+++  +Q++ ++
Sbjct: 405 VGHDLDQSELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHNI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S     +LRY KV I+ DAD DG HIA+LL   F +    L+E+ HLF+  
Sbjct: 465 AIAIGVDPGSDDL-SELRYGKVCILADADSDGLHIATLLCALFVKHFPTLVEEGHLFVAM 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPLFRI       YA DE+    IL++ K       +I+RFKGLGEM ASQL+ET +D N
Sbjct: 524 PPLFRIDDNKDVHYALDEDELNSILKKCK---TKNPQITRFKGLGEMNASQLRETTLDPN 580

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            R L++++++   ++          L   +A +R  +++++ +  D
Sbjct: 581 TRRLVQLDLDDAHHTAGLLDKL---LAKKRASDRKDWLEQKGNLAD 623


>gi|325201661|gb|ADY97115.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis M01-240149]
 gi|325208604|gb|ADZ04056.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis NZ-05/33]
          Length = 661

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 243/672 (36%), Positives = 353/672 (52%), Gaps = 38/672 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ Y  SSI +L+GLEPV+ RPGMY   T   +  H+  EVIDNA DE + G+A  I+
Sbjct: 2   AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATAID 58

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154
           V +  +G L+V DNGRGIPV  HP+      +E++ T LHAGGKF+       Y  SGGL
Sbjct: 59  VQIHEDGSLSVRDNGRGIPVGLHPE-EGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213
           HGVG+SV NALS  L VTV R+  I    F+ G  + PL +  K      GT +   PD 
Sbjct: 118 HGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRVWPDG 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     +    L ++ ++KA L   V+   +      +       + +++P GLK+YL
Sbjct: 178 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEAHTQTWHYPDGLKSYL 233

Query: 274 QTKLENRS-----LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEG 327
              + +              + +     +      +A+ W EE      SY N I T  G
Sbjct: 234 TDLIADAQEAVPLFSCENYISDEHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293

Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           GTHE+GL+ A+   +  +  L     R + + SDD+      +LS  + +P+F GQTK K
Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRGVKVQSDDVFGKTAFVLSARVLDPQFQGQTKDK 353

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L + DA + V     DP + +L QN     K+ E  I +++ R+R    +++ +K     
Sbjct: 354 LTNRDALKLVAAVAGDPLELWLNQNVDFGKKIAELAIRQAQARMRSV--KKIEKKKGSGV 411

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKL DC        ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN      ++
Sbjct: 412 AVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +  N +I D+  A+G          D   LRY K+ I++DADVDG+HI  LLLT FY+  
Sbjct: 472 LFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531

Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614
             L+   H+++  PPLFR+    QG     +  YA D+     ILE  +K G  +    I
Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDGILERLQKEGVKETAYSI 591

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673
           SRFKGLGEM   QLK+T M  + R LL+V+I +  +   +T+D   KLMG  +A  R  +
Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETRDIFVKLMGKGEAAARRAW 649

Query: 674 IQERASFIDDVG 685
           ++      + + 
Sbjct: 650 MEREGDTAE-LD 660


>gi|325136669|gb|EGC59269.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis M0579]
          Length = 661

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 243/672 (36%), Positives = 352/672 (52%), Gaps = 38/672 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ Y  SSI +L+GLEPV+ RPGMY   T   +  H+  EVIDNA DE + G+A  I+
Sbjct: 2   AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATAID 58

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154
           V +  +G L+V DNGRGIPV  HP+      +E++ T LHAGGKF+       Y  SGGL
Sbjct: 59  VQIHEDGSLSVRDNGRGIPVGLHPE-EGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213
           HGVG+SV NALS  L VTV R+  I    F+ G  + PL +  K      GT +   PD 
Sbjct: 118 HGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRVWPDG 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     +    L ++ ++KA L   V+   +      +       + +++P GLK+YL
Sbjct: 178 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEAHTQTWHYPDGLKSYL 233

Query: 274 QTKLENRS-----LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEG 327
              + +              +       +      +A+ W EE      SY N I T  G
Sbjct: 234 TDLIADAQEAVPIFSCENYISDDHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293

Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           GTHE+GL+ A+   +  +  L     R + + SDD+      +LS  + +P+F GQTK K
Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRGVKVQSDDVFGKTAFVLSARVLDPQFQGQTKDK 353

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L + DA + V     DP + +L QN     K+ E  I +++ R+R    +++ +K     
Sbjct: 354 LTNRDALKLVAAVAGDPLELWLNQNVDFGKKIAELAIRQAQARMRSV--KKIEKKKGSGV 411

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKL DC        ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN      ++
Sbjct: 412 AVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +  N +I D+  A+G          D   LRY K+ I++DADVDG+HI  LLLT FY+  
Sbjct: 472 LFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531

Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614
             L+   H+++  PPLFR+    QG     +  YA D+     ILE  +K G  +    I
Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDSILERLQKEGVKETAYSI 591

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673
           SRFKGLGEM   QLK+T M  + R LL+V+I +  +   +T+D   KLMG  +A  R  +
Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETRDIFVKLMGKGEAAARRAW 649

Query: 674 IQERASFIDDVG 685
           ++      + + 
Sbjct: 650 MEREGDTAE-LD 660


>gi|225076315|ref|ZP_03719514.1| hypothetical protein NEIFLAOT_01356 [Neisseria flavescens
           NRL30031/H210]
 gi|224952439|gb|EEG33648.1| hypothetical protein NEIFLAOT_01356 [Neisseria flavescens
           NRL30031/H210]
          Length = 661

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 243/672 (36%), Positives = 352/672 (52%), Gaps = 38/672 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ Y  SSI +L+GLEPV+ RPGMY   T   +  H+  EVIDNA DE + G+A  I+
Sbjct: 2   TKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATEID 58

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154
           V +  +G L+V DNGRGIPV  HP       +E++ T LHAGGKF+       Y  SGGL
Sbjct: 59  VRIHDDGSLSVHDNGRGIPVGLHP-VEGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213
           HGVG+SV NALS  L VTV R+  +    F+ G  + PL +  K      GT +   PD 
Sbjct: 118 HGVGVSVTNALSTRLEVTVKREGKVHRIVFAGGDVVEPLAEVGKCAVKDSGTEVRVWPDG 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     +    L ++ ++KA L   V+   +      +       + +++P GLK+YL
Sbjct: 178 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEAHTQTWHYPDGLKSYL 233

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHR-----GTVEWAIAWCEENPE-ITSYCNTILTDEG 327
              + +                G +          +A+ W EE      SY N I T  G
Sbjct: 234 TDLIADAQEAVPIFSCENYISDGHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293

Query: 328 GTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           GTHE+GL+ A+   +  +  L     R + + SDD+      +LS  + +P+F GQTK K
Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRGVKVQSDDVFGKTAFVLSARVLDPQFQGQTKDK 353

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L + DA + V     DP + +L QN     K+ E  I +++ R+R    +++ +K     
Sbjct: 354 LTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSV--KKIEKKKGSGV 411

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKL DC        ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN      ++
Sbjct: 412 AVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDL---RYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +  N +I D+  A+G          DL   RY K+ I++DADVDG+HI  LLLT FY+  
Sbjct: 472 LFGNAEIHDISVAIGVDPHGINDNPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531

Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614
             L+   H+++  PPLFR+    QG     +  YA D+     ILE  +K G  +    I
Sbjct: 532 PKLVANGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDSILERLQKEGVKETAYSI 591

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673
           SRFKGLGEM   QLK+T M  + R LL+V+I +  +   +T+D   KLMG  +A  R  +
Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETRDIFVKLMGKGEAAARRAW 649

Query: 674 IQERASFIDDVG 685
           +++     + + 
Sbjct: 650 MEKEGDTAE-LD 660


>gi|194365224|ref|YP_002027834.1| DNA topoisomerase IV subunit B [Stenotrophomonas maltophilia
           R551-3]
 gi|194348028|gb|ACF51151.1| DNA topoisomerase IV, B subunit [Stenotrophomonas maltophilia
           R551-3]
          Length = 629

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 244/642 (38%), Positives = 363/642 (56%), Gaps = 25/642 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y+A+ I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AG+A  IE++L  
Sbjct: 5   YNAADIEVLSGLDPVKRRPGMY---TDTARPNHLAQEVIDNSVDEALAGHARSIEITLFK 61

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G + V D+GRG+PV+ HP+      +E+ILT LHAGGKF+N+ Y  SGGLHGVG+SVVN
Sbjct: 62  DGSVEVSDDGRGMPVDIHPE-EKIPGVELILTRLHAGGKFNNNNYTFSGGLHGVGVSVVN 120

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222
           ALS  + + + R+       F  G   SPLE    V +   GTR+ F PDPK F     F
Sbjct: 121 ALSTLVEIHIKREGAEHRITFRNGDRASPLEVVGSVGKKNTGTRLRFWPDPKYFDTP-KF 179

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L  + ++KA L   +    + +          + + +Y+  GL+ YL+ +L +R  
Sbjct: 180 AVRALKHLLRAKAVLCPGLTVKLTDE-------ATGDVDTWYYEDGLRDYLKLELGDRES 232

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRG 341
           + +++F G  +K       V+WA+AW  E      SY N I T + GTH +GLR  LT  
Sbjct: 233 LPADLFVGNLKKDTEI---VDWAVAWLPEGELVQESYVNLIPTAQHGTHANGLRTGLTEA 289

Query: 342 IKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
           ++++ +      R + +  +D+      +LS+ + +P+F+GQTK +L S  A   VE A 
Sbjct: 290 LREFCDFRNLLPRGVKLAPEDVWDRVSFVLSLKMTDPQFSGQTKERLSSRQAAGFVEGAA 349

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
            D F   L QN     K+ +  IER+  RL+   ++ V RK   +   LPGKLADC    
Sbjct: 350 HDAFSLLLNQNVELGEKIAQIAIERASARLK--TEKLVVRKKVTQGPALPGKLADCISQD 407

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              TELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN     S  +  ++++ +L  A+
Sbjct: 408 LSRTELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVSSNSVLASEEVHNLAVAI 467

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           GC          LRY KVII+ DAD DG HIA+LL   F +    L++  H+F+  PPLF
Sbjct: 468 GCDPGKDDI-SGLRYGKVIILADADSDGLHIATLLTALFLKHFPALVDAGHVFVAMPPLF 526

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           RI  G +  YA DEE K+ +L++ ++   KG + ++RFKGLGEM   QL+E+ +  + R 
Sbjct: 527 RIDVGKQVFYALDEEEKRSMLDKIEREKIKGAVNVTRFKGLGEMNPPQLRESTIHPDTRR 586

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           L+++ ++    +          L   +A +R  +++ +    
Sbjct: 587 LVQLTVDDREQTSSLMDML---LAKKRASDRKGWLETKGDLA 625


>gi|28896788|ref|NP_796393.1| DNA gyrase subunit B [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839074|ref|ZP_01991741.1| DNA gyrase, B subunit [Vibrio parahaemolyticus AQ3810]
 gi|260363487|ref|ZP_05776320.1| DNA gyrase, B subunit [Vibrio parahaemolyticus K5030]
 gi|260876546|ref|ZP_05888901.1| DNA gyrase, B subunit [Vibrio parahaemolyticus AN-5034]
 gi|260897307|ref|ZP_05905803.1| DNA gyrase, B subunit [Vibrio parahaemolyticus Peru-466]
 gi|260901413|ref|ZP_05909808.1| DNA gyrase, B subunit [Vibrio parahaemolyticus AQ4037]
 gi|29611941|sp|O51859|GYRB_VIBPA RecName: Full=DNA gyrase subunit B
 gi|28804996|dbj|BAC58277.1| DNA gyrase, subunit B [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747457|gb|EDM58411.1| DNA gyrase, B subunit [Vibrio parahaemolyticus AQ3810]
 gi|308087831|gb|EFO37526.1| DNA gyrase, B subunit [Vibrio parahaemolyticus Peru-466]
 gi|308090372|gb|EFO40067.1| DNA gyrase, B subunit [Vibrio parahaemolyticus AN-5034]
 gi|308107191|gb|EFO44731.1| DNA gyrase, B subunit [Vibrio parahaemolyticus AQ4037]
 gi|308113561|gb|EFO51101.1| DNA gyrase, B subunit [Vibrio parahaemolyticus K5030]
 gi|328471241|gb|EGF42143.1| DNA gyrase subunit B [Vibrio parahaemolyticus 10329]
          Length = 805

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 232/566 (40%), Positives = 350/566 (61%), Gaps = 17/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I V
Sbjct: 2   SENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+++ +T+ R   I +Q +  G P +PL       +K GT+I F P  + F + 
Sbjct: 121 SVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKTGTQIRFWPSAETFSNT 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V      ++E        +++ F + GG++ ++Q    N
Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KQDHFMYEGGIQAFVQHLNTN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  +IF    E++     +VE A+ W +     I  + N I   +GGTH +G R AL
Sbjct: 233 KTPIIEKIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAAL 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+A+ +    +LV+NP EA  +   +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 351 ESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  DEE   + 
Sbjct: 531 AQPPLYKVKKGKQEQYIKDEEAMNQY 556



 Score =  136 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G +++         + LE   K     +   R+KGLGEM   QL ET MD   R ++
Sbjct: 708 IKRGERTLPVSS---FAEALEWLVKESMRGLSRQRYKGLGEMNPDQLWETTMDPETRRMM 764

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R  FI+E A  + ++ 
Sbjct: 765 QVTIEDAVG----ADQLFTTLMGDQVEPRRHFIEENALKVANLD 804


>gi|323493784|ref|ZP_08098902.1| DNA gyrase subunit B [Vibrio brasiliensis LMG 20546]
 gi|323311918|gb|EGA65064.1| DNA gyrase subunit B [Vibrio brasiliensis LMG 20546]
          Length = 805

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 231/566 (40%), Positives = 347/566 (61%), Gaps = 17/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I V
Sbjct: 2   SENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+++ +T+ R   I +Q +  G P +PL       +K GT+I F P  + F + 
Sbjct: 121 SVVNALSEKVTLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DKTGTQIRFWPSAETFSNT 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V      ++E        + + F F GG++ ++     N
Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLIDERE------EDKSDHFMFEGGIQAFVDHLNTN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  +IF    E++      VE A+ W +     I  + N I   +GGTH +G R AL
Sbjct: 233 KTPIIEKIFHFDFERED--GIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAL 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+A+ +    +LV+NP EA  +   +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 351 ESAMGEKLSEFLVENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  DE+   + 
Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMNQY 556



 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
             LE   K  +  + + R+KGLGEM   QL ET MD   R +++V I   +         
Sbjct: 722 DALEWLIKESRRGLSLQRYKGLGEMNPEQLWETTMDPETRRMMQVTIEDAVG----ADQL 777

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
              LMG + + R  FI+E A  + ++ 
Sbjct: 778 FTTLMGDQVEPRRNFIEENALKVANLD 804


>gi|260431693|ref|ZP_05785664.1| DNA gyrase, B subunit [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415521|gb|EEX08780.1| DNA gyrase, B subunit [Silicibacter lacuscaerulensis ITI-1157]
          Length = 805

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 226/573 (39%), Positives = 334/573 (58%), Gaps = 16/573 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
             +  A+  Y A SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DN +DE +AG+
Sbjct: 2   SEDAQANQEYGAESIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGH 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ + V +  +  ++V DNGRGIPV+ HP+    S  E+I+T LHAGGKFD+++Y++SGG
Sbjct: 62  ADHVTVKIHADSSVSVSDNGRGIPVDIHPE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALSD L + + R       +F RG  +  L+   +  ++ GT + F    
Sbjct: 121 LHGVGVSVVNALSDWLELRIWRNGKEHFARFERGETVEHLKVVGECGDRTGTEVRFLAST 180

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
             F +   +    L K  +  A+L+  V+     ++              ++ GG+K ++
Sbjct: 181 DTFSNL-EYSFETLEKRLRELAFLNSGVRIILVDERPAERLETE-----LFYEGGVKEFV 234

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +    +++    E    K E+       VE A+ W +     +  + N I   +GGTH +
Sbjct: 235 KYLDRSKTPAMPEPIYIKGERDDI---GVEIAMWWNDSYHETVLPFTNNIPQRDGGTHVA 291

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR I  YA+ +    K  ++   DD       +LSV + +P+F+ QTK KLVS 
Sbjct: 292 GFRAALTRTINNYAQSSGIAKKEKVNFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 351

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           + +  VE  + +    +  +NP EA  ++  +IE +  R   RK RE   RKTA+    L
Sbjct: 352 EVRPAVEGMVNEKLAEWFEENPNEAKTIVGKIIEAALAREAARKARELTRRKTAMDVNYL 411

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
            GKL DCS+     TELF+VEGDSAGGSA+  R+R  QAVLPLRGKILNV  A  +++ +
Sbjct: 412 AGKLKDCSEKDPSKTELFLVEGDSAGGSAQTGRDRLTQAVLPLRGKILNVERARFDRMLS 471

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q+I +LV ALG    R ++    LRY K++IMTDADVDGAHI +LLLTFFY++M +LIE
Sbjct: 472 SQEIGNLVMALGTGIGRDEFDISKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIE 531

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
             +L++  PPL+++++G   VY  D+      L
Sbjct: 532 GGYLYIAQPPLYKVSRGKSEVYLKDQAALDDYL 564



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L    + G+  + + R+KGLGEM   QL ET +D + RTLL+V ++     + +  D 
Sbjct: 722 DLLRAILEEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVRVDD----MVEADDL 777

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R +FIQ+ A  ++++ 
Sbjct: 778 FTKLMGDVVEPRREFIQKNALSVENLD 804


>gi|261378873|ref|ZP_05983446.1| DNA topoisomerase IV, B subunit [Neisseria cinerea ATCC 14685]
 gi|269144688|gb|EEZ71106.1| DNA topoisomerase IV, B subunit [Neisseria cinerea ATCC 14685]
          Length = 661

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 243/672 (36%), Positives = 351/672 (52%), Gaps = 38/672 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ Y  SSI +L+GLEPV+ RPGMY   T   +  H+  EVIDNA DE + G+A  I+
Sbjct: 2   AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATEID 58

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154
           V +  +G L+V DNGRGIPV  HP       +E++ T LHAGGKF+       Y  SGGL
Sbjct: 59  VQIHEDGSLSVRDNGRGIPVGLHP-VEGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213
           HGVG+SV NALS  L VTV R+  I    F+ G  + PL +  K      GT +   PD 
Sbjct: 118 HGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLTEVGKCAVKDSGTEVRVWPDG 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     +  + L ++ ++KA L   V+   +      +       + +++P GLK+YL
Sbjct: 178 KYFESPN-YSISELERLLRAKAVLLPGVRVSLT---RPVKGEDEAHTQTWHYPDGLKSYL 233

Query: 274 QTKLENRS-----LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEG 327
              + +              +       +      +A+ W EE      SY N I T  G
Sbjct: 234 TDLIADAQEAVPLFSCENYISDDHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293

Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           GTHE+GL+ A+   +  +  L     R + + SDD+      +LS  + +P+F GQTK K
Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRGVKVQSDDVFSKTAFVLSARVLDPQFQGQTKDK 353

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L + DA + V     DP + +L QN     K+ E  I +++ R+R    +++ +K     
Sbjct: 354 LTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSV--KKIEKKKGSGV 411

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKL DC        ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN      ++
Sbjct: 412 AVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +  N +I D+  A+G          D   LRY K+ I++DADVDG+HI  LLLT FY+  
Sbjct: 472 LFGNAEIHDISVAIGVDPHGINDNPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531

Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614
             L+   H+++  PPLFR+    QG     +  YA D+     ILE  +K G  +    I
Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDSILERLQKEGVKETAYSI 591

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673
           SRFKGLGEM   QLK+T M  + R LL+V+I +  +   +T+D   KLMG  +A  R  +
Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETRDIFIKLMGKGEAAARRAW 649

Query: 674 IQERASFIDDVG 685
           ++        + 
Sbjct: 650 MEREGDTA-QLD 660


>gi|315635217|ref|ZP_07890494.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Aggregatibacter
           segnis ATCC 33393]
 gi|315475963|gb|EFU66718.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Aggregatibacter
           segnis ATCC 33393]
          Length = 806

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 229/570 (40%), Positives = 351/570 (61%), Gaps = 19/570 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           + +  + Y A+SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY +
Sbjct: 2   STTTPETYGANSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCD 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V D+GRGIPV+ HP+    S  E+I+T LHAGGKFD+++Y++SGGLH
Sbjct: 62  DIVVTIHSDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD+L +T+ RQ  +  Q +S G P +PL    +   + GT + F P P I
Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGKVHEQFYSLGDPQAPLAVIGETT-QTGTTVRFWPSPTI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   F+   L K  +  ++L+  V      ++         +++ F++ GG++ +++ 
Sbjct: 180 FTNI-EFEYDILAKRLRELSFLNSGVSIRLIDER-------TDKQDHFHYEGGIQAFVEY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
               ++ I  + F    EK G     VE A+ W +     I  + N I   +GGTH +G 
Sbjct: 232 INRGKTPIHPKPFYFSAEKDGI---GVEIALQWNDGYAENIYCFTNNIPQRDGGTHLAGF 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R A+TR +  Y E      K  ++   DD     V ++SV + +P+F+ QTK KLVS + 
Sbjct: 289 RGAMTRTLNNYMENEGYTKKSKVATSGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEV 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451
           + +VE+ + +    YL++NP +   ++  +I+ +  R   RK R    RK A+    LPG
Sbjct: 349 KSSVESLMNEYLQTYLLENPNDVKIIVTKIIDAARAREAARKAREMTRRKGALDLGGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++ 
Sbjct: 409 KLADCQERDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSA 468

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ 
Sbjct: 469 EVGTLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKI 600
           ++++  PPL+++ +G +  Y  D+E   + 
Sbjct: 529 YVYIAQPPLYKVKKGKQEQYIKDDEAMAEF 558



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 5/89 (5%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ +E   K  +  + I R+KGLGEM   QL ET MD N R +L+V I   +       
Sbjct: 722 FEQAIEWLMKESRRGLMIQRYKGLGEMNPEQLWETTMDPNTRRMLKVSIKDAV----AAD 777

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG + + R +FI+  A    ++ 
Sbjct: 778 QLFTTLMGDEVEPRREFIESNALRA-NLD 805


>gi|89074699|ref|ZP_01161157.1| DNA gyrase subunit B [Photobacterium sp. SKA34]
 gi|89049463|gb|EAR55024.1| DNA gyrase subunit B [Photobacterium sp. SKA34]
          Length = 805

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 17/574 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I V
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCEDIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +G ++V D+GRGIP E H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDGSVSVSDDGRGIPTEIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+++ +T+ R    + Q +  G+P +PL          GTRI F P    F + 
Sbjct: 121 SVVNALSEKVELTIQRAGHTYQQVYRHGVPDAPLAVIGDTEK-TGTRIRFWPSEDTFTNI 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V    S ++E        +++ F + GG++ +++    N
Sbjct: 180 -EFHYEILAKRLRELSFLNSGVSINLSDERE------EGKEDHFMYEGGIRAFVEHLNRN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  ++F   +E+      +VE A+ W +     I  + N I   +GGTH +G R AL
Sbjct: 233 KTPIHPKVFHFDSERDD--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGAL 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKAAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+A+ +    +L++NP +A  +   +I+ S  R   RK R    RK A+    LPGKLAD
Sbjct: 351 ESAMNEKLAEFLLENPSDAKTVCSKIIDASRAREAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ A+GC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ H+++
Sbjct: 471 LITAMGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +         
Sbjct: 531 AQPPLYKVKKGKQEQYIKDDEDMNQYQTTLALDN 564



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 4/86 (4%)

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
            LE   K  +  + + R+KGLGEM   QL ET MD   R +++V IN  +       +  
Sbjct: 723 ALEWLNKESRRGLSLQRYKGLGEMNPEQLWETTMDPESRRMMQVTINDAV----AADELF 778

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
             LMG + + R  FI++ A  + ++ 
Sbjct: 779 TCLMGDQVEPRRNFIEDNALKVANLD 804


>gi|269962694|ref|ZP_06177039.1| DNA gyrase, subunit B [Vibrio harveyi 1DA3]
 gi|269832617|gb|EEZ86731.1| DNA gyrase, subunit B [Vibrio harveyi 1DA3]
          Length = 805

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 229/566 (40%), Positives = 348/566 (61%), Gaps = 17/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I V
Sbjct: 2   SENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDNSVSVTDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+++ +T+ R   I +Q +  G P +PL       ++ GT+I F P  + F + 
Sbjct: 121 SVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETFTNI 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V      ++E        + + F F GG++ +++    N
Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KSDHFMFEGGIQAFVEHLNTN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  +IF    E++      VE A+ W +     I  + N I   +GGTH +G R AL
Sbjct: 233 KTPIIEKIFHFDFERED--GIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAL 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+A+ +    +L++NP EA  +   +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 351 ESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  DE+   + 
Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMNQY 556



 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G ++            LE   K  +  + + R+KGLGEM   QL ET MD   R ++
Sbjct: 708 IKRGERTQPVSS---FASALEWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMM 764

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R  FI+E A  + ++ 
Sbjct: 765 QVTIEDAVG----ADQLFTTLMGDQVEPRRNFIEENALKVANLD 804


>gi|187478868|ref|YP_786892.1| DNA topoisomerase IV subunit B [Bordetella avium 197N]
 gi|115423454|emb|CAJ49988.1| topoisomerase IV subunit B [Bordetella avium 197N]
          Length = 670

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 246/668 (36%), Positives = 354/668 (52%), Gaps = 39/668 (5%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A+  Y  SSIR+L+GLEPVR RPGMY   T  +   H+  EVIDNA DE +AG+   I+V
Sbjct: 19  ATPRYTESSIRVLKGLEPVRQRPGMY---TRTENPLHIVQEVIDNAADEALAGHGKQIQV 75

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLHG 156
           +L  +G ++V D+GRGIPV  HP+  N   +E++ T LHAGGKFD      Y  SGGLHG
Sbjct: 76  TLHADGSISVEDDGRGIPVGLHPE-ENAPVVELVFTRLHAGGKFDKQGGGAYAFSGGLHG 134

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK-EKVRNKRGTRITFRPDPKI 215
           VG+SV NAL+  L V V R+  +    F+ G  +  L    E  R K GTR+   PDPK 
Sbjct: 135 VGVSVTNALAKRLEVVVWREGGVHRLVFAGGDVIEALAPYPEGGRKKSGTRVRVWPDPKY 194

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F          L  + +SKA L   VK     +K    K        + +  GL+ YL  
Sbjct: 195 FDSPN-IPMGELTHLLRSKAVLLSGVKVVLVNEKTGDTKT-------WQYQDGLRGYLSE 246

Query: 276 KLENRSLISS----EIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTH 330
            L    L+      E + G   +        +W +AW E+      SY N I T  GGTH
Sbjct: 247 ALAGAELMVPFFEGEQYAGADHETFAEGEGAQWVVAWAEDGNVVRESYVNLIPTPAGGTH 306

Query: 331 ESGLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           ESGLR  L   +K +AE  +   + + ++ +D+   A  +LS  + +P+F GQ K +L S
Sbjct: 307 ESGLREGLFGAVKSFAELHSLLPKGVKLLPEDVFARASFVLSAKVLDPQFQGQIKERLNS 366

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
            DA R V    +   D +L  N     KL E  I +++ R R    ++V ++ +     L
Sbjct: 367 RDAVRLVGGFSKSALDLWLHSNVEYGKKLAELAIRQAQARAR--SAQKVEKRKSSGVAVL 424

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKL DC  + A  TE+F+VEGDSAGGSAK  R++  QA+LPLRGK+LN      +++  
Sbjct: 425 PGKLTDCEASDASRTEIFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNSWEVDRDRLFA 484

Query: 510 NQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           N +I D+  A+G          D   LRY ++ I++DADVDG+HI  LLLT F++    L
Sbjct: 485 NNEIHDIAVAIGVDPHGPGDTPDLSGLRYGRICILSDADVDGSHIQVLLLTLFFKHFPKL 544

Query: 567 IEQKHLFLISPPLFRIT---QGT---KSVYAHDEEHKQKILEEFKKHG--KGKIEISRFK 618
           +E  H+++  PPL+R+    QG    + +Y  D+       ++ +K G     + +SRFK
Sbjct: 545 VEAGHVYVARPPLYRLDVPAQGKRPARKIYCLDDGELAAAQDKLRKEGVRDNALSVSRFK 604

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQER 677
           GLGEM  +QL ET M+ + R LL V       S  DT    + LMG  ++ +R  +I+++
Sbjct: 605 GLGEMNPAQLWETTMNPDTRRLLPVAYGD--LSPADTTRMFDMLMGKGESAQRRAWIEDK 662

Query: 678 ASFIDDVG 685
            +  + + 
Sbjct: 663 GNLAE-LD 669


>gi|153835131|ref|ZP_01987798.1| DNA gyrase, B subunit [Vibrio harveyi HY01]
 gi|148868403|gb|EDL67517.1| DNA gyrase, B subunit [Vibrio harveyi HY01]
          Length = 805

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 228/566 (40%), Positives = 348/566 (61%), Gaps = 17/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I V
Sbjct: 2   SENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDNSVSVTDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+++ +T+ R   I +Q +  G P +PL       ++ GT+I F P  + F + 
Sbjct: 121 SVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETFTNI 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V      ++E        + + F F GG++ +++    N
Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KSDHFMFEGGIQAFVEHLNTN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  +IF    E++      VE A+ W +     I  + N I   +GGTH +G R AL
Sbjct: 233 KTPIIEKIFHFDFERED--GIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAL 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+++ +    +L++NP EA  +   +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 351 ESSMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  DE+   + 
Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMNQY 556



 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G ++            LE   K  +  + + R+KGLGEM   QL ET MD   R ++
Sbjct: 708 IKRGERTQPVSS---FASALEWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMM 764

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R  FI+E A  + ++ 
Sbjct: 765 QVTIEDAVG----ADQLFTTLMGDQVEPRRNFIEENALKVANLD 804


>gi|71066648|ref|YP_265375.1| DNA topoisomerase IV subunit B [Psychrobacter arcticus 273-4]
 gi|71039633|gb|AAZ19941.1| DNA topoisomerase IV subunit B [Psychrobacter arcticus 273-4]
          Length = 628

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 254/646 (39%), Positives = 374/646 (57%), Gaps = 26/646 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y+A S+ +LEGLEPVR RPGMY   TD    +HL  EVIDN++DE + GYA  I+V L
Sbjct: 2   SQYNAQSLEVLEGLEPVRRRPGMY---TDTTRPNHLAQEVIDNSVDEALGGYAKTIKVQL 58

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G L+V D+GRG+P + HP+F N+S +E+ILT LHAGGKF  S YE+SGGLHGVGISV
Sbjct: 59  HSDGSLSVEDDGRGMPTDTHPEF-NQSGIELILTRLHAGGKFSTSNYEVSGGLHGVGISV 117

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + VTV R +  F   F  G P++ L +     + KRGTR+ F  D   F D  
Sbjct: 118 VNALSTRVEVTVWRDSMQFEMAFENGAPVTALTETISSNKRKRGTRVRFWADGS-FFDTP 176

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F+  +L    ++KA L+  +   +  D          EK  + F  G+  YL  +L+  
Sbjct: 177 KFNIKQLKHNLKAKAVLAAGLTIEFVDD-------INNEKVVWQFTDGVVEYLSAQLDGL 229

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +  E F    + K   R  + +A++W  +       SY N I T +GGTH +GLR  +
Sbjct: 230 ETLPPEPFYYHYDAKKGERAGITFALSWLPDGGTPIQESYVNLIPTAQGGTHVNGLRTGI 289

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ ++     R++ + ++D+      ILS+   EP+F+GQTK +L S +A   V+
Sbjct: 290 LEALREFCDIHNLLPRSVKLTAEDVWDGVNYILSLKFSEPQFSGQTKERLSSREAAAAVQ 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
              +D F  +L Q+     ++ E  I ++  RL+    ++V RK   +   LPGKLADC 
Sbjct: 350 TLAKDAFSLWLNQHADMGAQIAELAINKAGRRLK--SAKKVARKKITQGPALPGKLADCR 407

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
            ++  G ELF+VEGDSAGGSAKQAR+R  QA+LPLRGKILN     S+ + ++Q+I D+ 
Sbjct: 408 GDLRDGAELFLVEGDSAGGSAKQARDRHYQAILPLRGKILNTWEVSSDTVLSSQEIHDIA 467

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S     +LRY+KV I+ DAD DG HIA+L+   F +    L++  HLF+  P
Sbjct: 468 IAIGVDPASDDL-SELRYDKVCILADADSDGLHIATLICALFVKHFPALVDAGHLFVAMP 526

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+R+    +  YA DE   Q IL      G  K +I+RFKGLGEM A QL+ET M+ + 
Sbjct: 527 PLYRVDVAKEVHYALDETELQHILANVP--GNKKAQITRFKGLGEMSAEQLRETTMNRDT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++    D++ +  T   ++ L+  K A +R  +++++ +  D
Sbjct: 585 RRLVQL----DMDDMVLTNSVMDMLLAKKRAADRKSWLEDKGNLAD 626


>gi|304414285|ref|ZP_07395653.1| DNA gyrase B subunit [Candidatus Regiella insecticola LSR1]
 gi|304283499|gb|EFL91895.1| DNA gyrase B subunit [Candidatus Regiella insecticola LSR1]
          Length = 804

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 227/574 (39%), Positives = 346/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+ YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNIYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            +  +  ++V D+GRGIP   H +    S  ++I+T LHAGGKFD+++Y++SGGLHGVGI
Sbjct: 62  KIHMDNSVSVQDDGRGIPTGLHEE-EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGI 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L + + R+  I  Q +  G P +PL    +   + GTR+ F P  + F + 
Sbjct: 121 SVVNALSEKLELVIHREGKIHEQTYMMGEPQTPLRIVGETA-QTGTRVRFWPSLQTFTNN 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  +      +++  E       + F++ GG++ +++   +N
Sbjct: 180 TEFQYDPLAKRLRELSFLNSGISIKLHDERDNKE-------DHFHYEGGIRAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  +IF   T K       VE A+ W +     I  + N I   +GGTH  G R A+
Sbjct: 233 KNPIHPKIFYFSTIKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 289

Query: 339 TRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  IS   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNSYMDKEGYNKKTKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLAD
Sbjct: 350 ETLMNEKLIEYLLENPTDAKIVVNKIIDAARAREAARRAREMTRRKGALDLGGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+F+
Sbjct: 470 LITALGCGIGRDEYDPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E  ++        G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMEQYQISLALDG 563



 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            +  L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 719 FEAALDWLVKESRRGLTIQRYKGLGEMNPDQLWETTMDPANRRMLRVMVKDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803


>gi|240116103|ref|ZP_04730165.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae PID18]
 gi|260440087|ref|ZP_05793903.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae DGI2]
 gi|268601769|ref|ZP_06135936.1| topoisomerase IV subunit B [Neisseria gonorrhoeae PID18]
 gi|291043375|ref|ZP_06569098.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae DGI2]
 gi|268585900|gb|EEZ50576.1| topoisomerase IV subunit B [Neisseria gonorrhoeae PID18]
 gi|291012981|gb|EFE04964.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae DGI2]
          Length = 661

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 242/672 (36%), Positives = 350/672 (52%), Gaps = 38/672 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ Y  SSI +L+GLEPV+ RPGMY   T   +  H+  EVIDNA DE + G+A  I+
Sbjct: 2   AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATEID 58

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154
           V +  +G L+V DNGRGIPV  HP+       E++ T LHAGGKF+       Y  SGGL
Sbjct: 59  VQIHEDGSLSVRDNGRGIPVGLHPE-EGVPVAELVFTRLHAGGKFNKKDGGSAYAFSGGL 117

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213
           HGVG+SV NALS  L V+V R   +    F+ G  + PL +  K      GT +   PD 
Sbjct: 118 HGVGVSVTNALSTRLEVSVKRDGKVHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRVWPDG 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     +    L ++ ++KA L   V+   +      +       + +++P GLK+YL
Sbjct: 178 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEAHTQTWHYPDGLKSYL 233

Query: 274 QTKLENRSLISSEIFTGKTEKKGTH-----RGTVEWAIAWCEENPE-ITSYCNTILTDEG 327
              + +                G +          +A+ W EE      SY N I T  G
Sbjct: 234 TDLIADAQEAVPLFSCENYISDGHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTSLG 293

Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           GTHE+GL+ A+   +  +  L     R + + SDD+      +LS  + +P+F GQTK K
Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRGVKVQSDDVFGKTAFVLSARVLDPQFQGQTKDK 353

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L + DA + V     DP + +L QN     K+ E  I +++ R+R    +++ +K     
Sbjct: 354 LTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARIRSV--KKIEKKKGSGV 411

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKL DC        ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN      ++
Sbjct: 412 AILPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +  N +I D+  A+G    +     D   LRY K+ I++DADVDG+HI  LLLT FY+  
Sbjct: 472 LFGNAEIHDISVAIGVDPHAINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531

Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614
             L+   H+++  PPLFR+    QG     +  YA D+     ILE  +K G  +    I
Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDGILERLQKEGVKETAYSI 591

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673
           SRFKGLGEM   QLK+T M  + R LL+V+I +  +   +T+D   KLMG  +A  R  +
Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETRDIFVKLMGKGEAAARRAW 649

Query: 674 IQERASFIDDVG 685
           ++        + 
Sbjct: 650 MEREGDTA-QLD 660


>gi|27364430|ref|NP_759958.1| DNA gyrase subunit B [Vibrio vulnificus CMCP6]
 gi|37678198|ref|NP_932807.1| DNA gyrase subunit B [Vibrio vulnificus YJ016]
 gi|320157813|ref|YP_004190192.1| DNA gyrase subunit B [Vibrio vulnificus MO6-24/O]
 gi|27360549|gb|AAO09485.1| DNA gyrase, B subunit [Vibrio vulnificus CMCP6]
 gi|37196937|dbj|BAC92778.1| DNA gyrase, subunit B [Vibrio vulnificus YJ016]
 gi|319933125|gb|ADV87989.1| DNA gyrase subunit B [Vibrio vulnificus MO6-24/O]
          Length = 805

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 228/566 (40%), Positives = 345/566 (60%), Gaps = 17/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I V
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP E HP+  N S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDNSVSVSDDGRGIPTEMHPE-ENVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+++ +T+ R     SQ +  G+P +PL          GT + F P  + F + 
Sbjct: 121 SVVNALSEKVLLTIHRGGHTHSQTYRHGVPDAPLAIIGDTEK-TGTTVRFWPSAETFTNI 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V      ++E  +K      + F + GG++ ++     N
Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLFDEREEDKK------DHFMYEGGIQAFVTHLNRN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  ++F    E++      VE A+ W +     I  + N I   +GGTH +G R AL
Sbjct: 233 KTPIHEKVFHFNAERED--GIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAL 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNSYMDKEGYSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+ + D  + +L ++P EA  +   +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 351 ESFMADKLNDFLAEHPSEAKTVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  DE+   + 
Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMNQY 556



 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
               LE   K  +  + + R+KGLGEM   QL ET MD   R ++RV I   +       
Sbjct: 720 FASALEWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMMRVTIEDAVG----AD 775

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           +    LMG + + R  FI+E A  + ++ 
Sbjct: 776 ELFTTLMGDQVEPRRNFIEENALKVANLD 804


>gi|328907309|gb|EGG27075.1| DNA topoisomerase IV subunit B [Propionibacterium sp. P08]
          Length = 721

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 232/705 (32%), Positives = 331/705 (46%), Gaps = 56/705 (7%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
                 S S  Y A ++ +LEGLE VR RP MYIG TD + L H   E+ DN +DE +AG
Sbjct: 22  ATVRTASTSREYGAKNLLVLEGLEAVRKRPAMYIGSTDTRGLMHCLWEIFDNGVDEALAG 81

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           Y   I V+L+  G + V D GRGIPV+  P+    S +E++ T LHAGGKF    Y +SG
Sbjct: 82  YGRRITVTLEKAGSILVTDEGRGIPVDVEPR-TGLSGVEVVYTKLHAGGKFGGGAYNVSG 140

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP---------------LSPLEKKE 197
           GLHGVG SVVNA+S  L V V R++T++   F RG+P                   +  +
Sbjct: 141 GLHGVGASVVNAVSARLDVEVDRKSTVWGMSFRRGVPGIFDGGGPDAPFTPESGVRKVGK 200

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
             R   GTR+ + PD +IF   A     +L    +  A+L   ++   + D+ I      
Sbjct: 201 AKRGATGTRVRYWPDRQIFLPDAKLSWTKLADRARQTAFLVPGLEIVITDDRGIQTDPET 260

Query: 258 PEK-----EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKG 296
            +      E   F GG+  + +    +  +       G+                     
Sbjct: 261 GDVLGTVSETMRFDGGISEFAEYLATDEPVNDVMRLQGEASFTETVPMLDENGGMTPTDV 320

Query: 297 THRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKK-YAELTQNKRA 354
                V+ A+ W         S+ N I T +GGTH  G    L R            K +
Sbjct: 321 DRDLGVDIALRWGSGYDTTVRSFVNIIATPKGGTHVQGFEQGLLRAFNAGLEGTRILKSS 380

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RTVENALRDPFDHYLVQ 410
             I+ DD++     +++V + EP+F GQTK  L +   +    R VE  +          
Sbjct: 381 EEIVKDDVLEGLTAVVTVSLAEPQFEGQTKEVLGTPPVRRLVARIVEEKMTAFLTSAKAA 440

Query: 411 NPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           +   A  L+E V+  S  R+  R  +    RK A+    LP KL DC  +    TELFIV
Sbjct: 441 DKPVARTLMEKVVSASRTRVAARAHKENQRRKNALESSHLPPKLKDCRSSDPDVTELFIV 500

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           EGDSA G+A  ARN  +QA+LP+RGKILNV  A    +  N +   ++Q +G  +   + 
Sbjct: 501 EGDSALGTANVARNSEHQALLPIRGKILNVQKADLGAMLKNVECASIIQVVGAGSGKTFG 560

Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-----TQ 584
            +  RY +VI M DAD DGAHI  LL T F++ M  ++E   +F   PPL R       +
Sbjct: 561 LDQARYGRVIFMADADSDGAHIRCLLATLFFRYMRPMVEAGRVFSAVPPLHRFELINPKR 620

Query: 585 G-TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRV 643
           G  K +Y + +   Q+   +  K G    E  R+KGLGEM ASQLKET MD   RTL R+
Sbjct: 621 GMDKYLYTYTDAEYQRTAAQLTKKGVRFKEPQRYKGLGEMDASQLKETTMDPRHRTLRRI 680

Query: 644 EINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVGT 686
            ++       + + +   LMG +   R +FI E A  +D   +  
Sbjct: 681 TVDD----AAEAEGTFEVLMGNEVAPRKQFIVEGAYRLDAEQIDA 721


>gi|313837127|gb|EFS74841.1| DNA gyrase, B subunit [Propionibacterium acnes HL037PA2]
 gi|314927849|gb|EFS91680.1| DNA gyrase, B subunit [Propionibacterium acnes HL044PA1]
 gi|314971900|gb|EFT15998.1| DNA gyrase, B subunit [Propionibacterium acnes HL037PA3]
          Length = 719

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 232/705 (32%), Positives = 331/705 (46%), Gaps = 56/705 (7%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
                 S S  Y A ++ +LEGLE VR RP MYIG TD + L H   E+ DN +DE +AG
Sbjct: 20  ATVRTASTSREYGAKNLLVLEGLEAVRKRPAMYIGSTDTRGLMHCLWEIFDNGVDEALAG 79

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           Y   I V+L+  G + V D GRGIPV+  P+    S +E++ T LHAGGKF    Y +SG
Sbjct: 80  YGRRITVTLEKAGSILVTDEGRGIPVDVEPR-TGLSGVEVVYTKLHAGGKFGGGAYNVSG 138

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP---------------LSPLEKKE 197
           GLHGVG SVVNA+S  L V V R++T++   F RG+P                   +  +
Sbjct: 139 GLHGVGASVVNAVSARLDVEVDRKSTVWGMSFRRGVPGIFDGGGPDAPFTPESGVRKVGK 198

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
             R   GTR+ + PD +IF   A     +L    +  A+L   ++   + D+ I      
Sbjct: 199 AKRGATGTRVRYWPDRQIFLPDAKLSWTKLADRARQTAFLVPGLEIVITDDRGIQTDPET 258

Query: 258 PEK-----EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKG 296
            +      E   F GG+  + +    +  +       G+                     
Sbjct: 259 GDVLGTVSETMRFDGGISEFAEYLATDEPVNDVMRLQGEASFTETVPMLDENGGMTPTDV 318

Query: 297 THRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKK-YAELTQNKRA 354
                V+ A+ W         S+ N I T +GGTH  G    L R            K +
Sbjct: 319 DRDLGVDIALRWGSGYDTTVRSFVNIIATPKGGTHVQGFEQGLLRAFNAGLEGTRILKSS 378

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RTVENALRDPFDHYLVQ 410
             I+ DD++     +++V + EP+F GQTK  L +   +    R VE  +          
Sbjct: 379 EEIVKDDVLEGLTAVVTVSLAEPQFEGQTKEVLGTPPVRRLVARIVEEKMTAFLTSAKAA 438

Query: 411 NPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           +   A  L+E V+  S  R+  R  +    RK A+    LP KL DC  +    TELFIV
Sbjct: 439 DKPVARTLMEKVVSASRTRVAARAHKENQRRKNALESSHLPPKLKDCRSSDPDVTELFIV 498

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           EGDSA G+A  ARN  +QA+LP+RGKILNV  A    +  N +   ++Q +G  +   + 
Sbjct: 499 EGDSALGTANVARNSEHQALLPIRGKILNVQKADLGAMLKNVECASIIQVVGAGSGKTFG 558

Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-----TQ 584
            +  RY +VI M DAD DGAHI  LL T F++ M  ++E   +F   PPL R       +
Sbjct: 559 LDQARYGRVIFMADADSDGAHIRCLLATLFFRYMRPMVEAGRVFSAVPPLHRFELINPKR 618

Query: 585 G-TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRV 643
           G  K +Y + +   Q+   +  K G    E  R+KGLGEM ASQLKET MD   RTL R+
Sbjct: 619 GMDKYLYTYTDAEYQRTAAQLTKKGVRFKEPQRYKGLGEMDASQLKETTMDPRHRTLRRI 678

Query: 644 EINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVGT 686
            ++       + + +   LMG +   R +FI E A  +D   +  
Sbjct: 679 TVDD----AAEAEGTFEVLMGNEVAPRKQFIVEGAYRLDAEQIDA 719


>gi|90413729|ref|ZP_01221717.1| DNA gyrase subunit B [Photobacterium profundum 3TCK]
 gi|90325198|gb|EAS41695.1| DNA gyrase subunit B [Photobacterium profundum 3TCK]
          Length = 805

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 229/566 (40%), Positives = 351/566 (62%), Gaps = 17/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I +
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCEDIII 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP + H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDNSVSVSDDGRGIPTDIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+++ +T+ R  +I  Q +  G+P  PLE   +  +K GTRI F P    F + 
Sbjct: 121 SVVNALSEKVELTIYRHGSIHHQIYHHGVPDKPLEAIGET-DKTGTRIRFWPSEDTFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V      ++E        +++ F + GG+K +++    N
Sbjct: 180 V-FHYEILAKRLRELSFLNSGVSIRLIDERE------EGKQDHFMYEGGIKAFVEHLNRN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I S++F    E++     +VE A+ W +     I  + N I   +GG+H +G R AL
Sbjct: 233 KTPIHSKVFHFDFERED--GISVEVAMQWNDGFQEGIYCFTNNIPQRDGGSHLAGFRGAL 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  + +      K   S   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNTFMDKEGYSKKEKTSTSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKPAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+A+ +    +L++NP +A  +   +I+ S  R   RK R    RK A+    LPGKLAD
Sbjct: 351 ESAMNEKLSEFLLENPSDAKIVCSKIIDASRAREAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ A+GC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ H+++
Sbjct: 471 LITAMGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  D+E   + 
Sbjct: 531 AQPPLYKVKKGKQEQYIKDDEDMDQY 556



 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G + +        ++ L+   K  +  + + R+KGLGEM   QL ET MD   R +L
Sbjct: 708 VQRGERKLSVSS---FKEGLDWLIKESRRGVYLQRYKGLGEMNPEQLWETTMDPESRRML 764

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V IN  +       +    LMG + + R  FI+E A  + ++ 
Sbjct: 765 QVTINDAV----AADELFTTLMGDQVEPRRNFIEENALKVANLD 804


>gi|319792862|ref|YP_004154502.1| DNA topoisomerase (ATP-hydrolyzing) [Variovorax paradoxus EPS]
 gi|315595325|gb|ADU36391.1| DNA topoisomerase (ATP-hydrolyzing) [Variovorax paradoxus EPS]
          Length = 662

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 251/674 (37%), Positives = 359/674 (53%), Gaps = 38/674 (5%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
            +P      ++  Y   SIR+L+GLEPV+ RPGMY   T      H+  EV+DNA DE +
Sbjct: 2   ATPPKTTSDSASGYSEGSIRVLKGLEPVKQRPGMY---TRTDNPLHIIQEVLDNAADEAL 58

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST--- 147
           AGY   I+V+L  +  +++ D+GRGIP   HP+      +E++ T LHAGGKFD  +   
Sbjct: 59  AGYGKKIKVTLHADNSVSIEDDGRGIPFGLHPE-EKAPVVELVFTRLHAGGKFDKGSGGA 117

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE--KKEKVRNKRGT 205
           Y  SGGLHGVG+SV NALS  L VT  R+ +I    FS G  +  LE  K E    K+GT
Sbjct: 118 YSFSGGLHGVGVSVTNALSKRLEVTSHREGSIARLAFSAGDVIEALEIRKLEAGERKQGT 177

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            +   PD K F   A    + L  + +SKA L   V    + +K         E +++ +
Sbjct: 178 TVRAWPDAKYFET-AALPMSELTHLLRSKAVLMPGVSVTLTVEK-------TKETQQWLY 229

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW----CEENPEITSYCNT 321
            GGL  YL   L    +I     +G  +K   +    E A        +  P   SY N 
Sbjct: 230 KGGLSDYLMQTLNGDPVIPLFEGSGHADKNADNFAEGEGADWCVAFTEDGQPVRESYVNL 289

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFA 380
           I T  GGTHESGLR  L   +K + E  +   + + ++ +D+   A  +LS  + +P+F 
Sbjct: 290 IPTSAGGTHESGLRDGLFTAVKGFIELHSLLPKGVKLLPEDVFARASYVLSAKVLDPQFQ 349

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQ K +L S DA R V + +R   + +L Q+     KL E  I+ ++ R R  ++ E  +
Sbjct: 350 GQIKERLNSRDAVRLVSSFVRPALELWLNQHVDYGKKLAELAIKAAQTRQRAGQKVEKRK 409

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
            + +  L  PGKL DC        E+F+VEGDSAGGSAK  R++ +QA+LPLRGK+LN  
Sbjct: 410 GSGVAVL--PGKLTDCESKDISHNEVFLVEGDSAGGSAKMGRDKESQAILPLRGKVLNTW 467

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLT 557
               +++  N +I D+  A+G          D   LRY K+ I++DADVDG+HI  LLLT
Sbjct: 468 EVERDRLFANTEIHDISVAVGVDPHGPNDTPDMSGLRYGKICILSDADVDGSHIQVLLLT 527

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--K 609
            F++    LIE  H+++  PPLFR+    +G K    VYA DE      L++ +K G  +
Sbjct: 528 LFFRHFPKLIETGHVYVAKPPLFRVDAPARGKKPASKVYALDEGELTATLDKLRKDGVRE 587

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KAD 668
           G   ISRFKGLGEM A QL ET ++ + R L++V++         TQ  I KLMG  +A 
Sbjct: 588 GAWSISRFKGLGEMSAEQLWETTLNPDTRRLMQVQL--GRFDFTSTQGEITKLMGKGEAA 645

Query: 669 ERFKFIQERASFID 682
            R + ++ RA  +D
Sbjct: 646 ARRELMELRADDVD 659


>gi|114319170|ref|YP_740853.1| DNA gyrase subunit B [Alkalilimnicola ehrlichii MLHE-1]
 gi|114225564|gb|ABI55363.1| DNA gyrase subunit B [Alkalilimnicola ehrlichii MLHE-1]
          Length = 805

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 223/568 (39%), Positives = 349/568 (61%), Gaps = 19/568 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +YD+ SI++L GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGY + I+V++
Sbjct: 6   SYDSDSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSVDEALAGYCSEIQVTI 65

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
            G+  +TV DNGRGIPV+ H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SV
Sbjct: 66  HGDNSVTVADNGRGIPVDIHTE-EGCSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 124

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+ L + + R   + +Q++  G+P+ PL+   + +   GTR+TF P  ++F     
Sbjct: 125 VNALSERLRLVIQRNGKVHTQEYRMGVPVEPLKVVGETQE-TGTRLTFLPSREVFTQT-Q 182

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L K  +  ++L+  V+     ++   E       + F + GG+K +++    N+ 
Sbjct: 183 YNYDILAKRFRELSFLNPGVRIALKDERTEKE-------DVFEYAGGIKAFVEHLNRNKD 235

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            +   +F     ++      V+ A+ W +     I  + N I   +GGTH SG R ALTR
Sbjct: 236 PLHPTVFYLAGMRESV---GVDVAMQWNDSYQENIFCFTNNIPQRDGGTHLSGFRAALTR 292

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            + +Y E      K  ++   DD+      ++SV   +P+F+ QTK KLVS + +  VE 
Sbjct: 293 TLNQYLEAQGYAKKLKVTPTGDDIREGLTAVVSVKAPDPKFSSQTKDKLVSSEIKGIVEG 352

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCS 457
            L + F+ +L +NP EA  + E +I+ S  R   RK RE+ R+   +    LPGKLADC 
Sbjct: 353 VLAEAFNDFLYENPAEAKAIAEKIIDASRAREAARKAREMTRRKGVLDVAGLPGKLADCQ 412

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           +     +E+++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+  + ++  L+
Sbjct: 413 EKDPAQSEIYLVEGDSAGGSAKQGRDRRYQAILPLKGKILNVEKARFDKMLASVEVGTLI 472

Query: 518 QALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
            ALGC   + ++  + LRY ++IIMTDADVDG+HI +LLLTFFY++M +L+E+ H+++  
Sbjct: 473 TALGCGIGKDEFDPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMRELVERGHVYIAQ 532

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEF 604
           PPL+++ +G +  Y  DE    + L + 
Sbjct: 533 PPLYKVKRGKQEHYVKDEAELTEYLLQI 560



 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            Q++++      +    I R+KGLGEM   QL ET M+ + R LLRV I   + S     
Sbjct: 720 LQEVVDWLMDEARRGQSIQRYKGLGEMNPDQLWETTMNPDTRRLLRVTIEDAVAS----D 775

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           +    LMG + + R  FI++ A  + ++ 
Sbjct: 776 EIFTTLMGDQVEPRRDFIEQNALTVANLD 804


>gi|325204644|gb|ADZ00098.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis M01-240355]
          Length = 661

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 244/672 (36%), Positives = 352/672 (52%), Gaps = 38/672 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ Y  SSI +L+GLEPV+ RPGMY   T   +  H+  EVIDNA DE + G+A  I+
Sbjct: 2   AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATAID 58

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154
           V +  +G L+V DNGRGIPV  HP+      +E++ T LHAGGKF+       Y  SGGL
Sbjct: 59  VQIHEDGSLSVRDNGRGIPVGLHPE-EGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213
           HGVG+SV NALS  L VTV R+  I    F+ G  + PL +  K      GT +   PD 
Sbjct: 118 HGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRVWPDG 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     +    L ++ ++KA L   V+   +      +       + +++P GLK+YL
Sbjct: 178 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEAHTQTWHYPDGLKSYL 233

Query: 274 QTKLENRSLISSEIFTGKTEKKGTH-----RGTVEWAIAWCEENPE-ITSYCNTILTDEG 327
              + +                G +          +A+ W EE      SY N I T  G
Sbjct: 234 TDLIADAQEAVPLFSCENYISDGHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293

Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           GTHE+GL+ A+   +  +  L     R + + SDD+      +LS  + +P+F GQTK K
Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRGVKVQSDDVFGKTAFVLSARVLDPQFQGQTKDK 353

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L + DA + V     DP + +L QN     K+ E  I +++ R+R    +++ +K     
Sbjct: 354 LTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSV--KKIEKKKGSGV 411

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKL DC        ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN      ++
Sbjct: 412 AVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +  N +I D+  A+G          D   LRY K+ I++DADVDG+HI  LLLT FY+  
Sbjct: 472 LFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531

Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHG--KGKIEI 614
             L+   H+++  PPLFR+    QG     +  YA D+     ILE  +K G  +    I
Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQGKNKPARKFYALDQNELDSILERLQKEGFKETAYSI 591

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673
           SRFKGLGEM   QLK+T M  + R LL+V+I +  +   +T+D   KLMG  +A  R  +
Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQILEGADD--ETRDIFVKLMGKGEAAARRAW 649

Query: 674 IQERASFIDDVG 685
           ++      + + 
Sbjct: 650 MEREGDTAE-LD 660


>gi|33152675|ref|NP_874028.1| DNA gyrase subunit B [Haemophilus ducreyi 35000HP]
 gi|33148899|gb|AAP96417.1| DNA gyrase subunit B [Haemophilus ducreyi 35000HP]
          Length = 810

 Score =  518 bits (1335), Expect = e-145,   Method: Composition-based stats.
 Identities = 238/586 (40%), Positives = 354/586 (60%), Gaps = 20/586 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
            + Q+ +++YD+SSI++L GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+
Sbjct: 1   MSEQNQTNSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 60

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
              I V++  +  ++V D+GRGIPV  HP+    S  E+I+T LHAGGKFD+++Y++SGG
Sbjct: 61  CQDIIVTIHSDNSISVQDDGRGIPVGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGG 119

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS +L +T+ R+  +  Q +S G P +PL       +K GT + F P  
Sbjct: 120 LHGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGEPDAPLTIIGNT-DKTGTSVRFWPSL 178

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF +K  F+   L K  +  ++L+  V      ++E  E       E F + GG+K Y+
Sbjct: 179 AIFKNKTEFEYKILSKRLRELSFLNSGVSIKLIDEREGKE-------EHFKYEGGIKAYV 231

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   E ++ I +  F   TEK G     VE ++ W +     +  + N I   +GGTH +
Sbjct: 232 EYLNEGKTHIHNTPFYLATEKDGI---GVEVSLQWNDSYNENVYCFTNNIPQRDGGTHLA 288

Query: 333 GLRVALTRGIKKYAELTQNKR----AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           G R ALTR +K Y + +   +     I    DD     V ++SV + +P+F+ QTK KLV
Sbjct: 289 GFRGALTRALKNYMDNSGVVKKVDANIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLV 348

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447
           S + +  VE+++ +    YL +NP +A  ++  +I+ +  R   RK R    RK A+   
Sbjct: 349 SSEVRGAVESSMNEALAEYLAENPDDAKNIVTKIIDAARAREAARKAREMTRRKGALDLG 408

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +EL++VEGDSAGGSAKQ R+R NQA+LPL+GKILNV  A  +K+
Sbjct: 409 GLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKM 468

Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
            ++Q++  L+ ALG    R  Y  E LRY K+IIMTDADVDGAHI +LLLTFFY++M +L
Sbjct: 469 LSSQEVATLITALGAGIGRDDYNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPEL 528

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612
           IE  ++++  PPL+++ +G +  Y  D +   +   +    G G  
Sbjct: 529 IENGYVYIAQPPLYKVKKGKQERYIQDNDEMLQYEIDIALEGAGLY 574



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 5/89 (5%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
             + L+   K  +  + I R+KGLGEM   QL ET MD   R +L+V I+  +       
Sbjct: 726 FAEALDWLVKESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNISDAI----AAD 781

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
              + LMG + + R  FI+  A +  ++ 
Sbjct: 782 KLFSTLMGDEVEPRRDFIESNALYA-NLD 809


>gi|156972780|ref|YP_001443687.1| DNA gyrase subunit B [Vibrio harveyi ATCC BAA-1116]
 gi|156524374|gb|ABU69460.1| hypothetical protein VIBHAR_00445 [Vibrio harveyi ATCC BAA-1116]
          Length = 805

 Score =  518 bits (1335), Expect = e-145,   Method: Composition-based stats.
 Identities = 229/566 (40%), Positives = 348/566 (61%), Gaps = 17/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I V
Sbjct: 2   SENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDNSVSVTDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+++ +T+ R   I +Q +  G P +PL       ++ GT+I F P  + F + 
Sbjct: 121 SVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETFTNI 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V      ++E        + + F F GG++ +++    N
Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KSDHFMFEGGIQAFVEHLNTN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  +IF    E++      VE A+ W +     I  + N I   +GGTH +G R AL
Sbjct: 233 KTPIIEKIFHFDFERED--GIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAL 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+A+ +    +L++NP EA  +   +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 351 ESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  DE+   + 
Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMNQY 556



 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G ++            LE   K  +  + + R+KGLGEM   QL ET MD   R ++
Sbjct: 708 IKRGERTQPVSS---FASALEWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMM 764

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R  FI+E A  + ++ 
Sbjct: 765 QVTIEDAVG----ADQLFTTLMGDQVEPRRNFIEENALKVANLD 804


>gi|197286953|ref|YP_002152825.1| DNA gyrase subunit B [Proteus mirabilis HI4320]
 gi|227354806|ref|ZP_03839223.1| DNA gyrase subunit B [Proteus mirabilis ATCC 29906]
 gi|194684440|emb|CAR46165.1| DNA gyrase subunit B [Proteus mirabilis HI4320]
 gi|227165124|gb|EEI49955.1| DNA gyrase subunit B [Proteus mirabilis ATCC 29906]
          Length = 804

 Score =  518 bits (1335), Expect = e-145,   Method: Composition-based stats.
 Identities = 231/574 (40%), Positives = 345/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+ YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY + I V
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCDEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHSDNSVSVRDDGRGIPTGIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L +T+ R   I  Q +  G+P   L+   +  +K GT + F P    F  +
Sbjct: 121 SVVNALSEKLELTIHRDGKIHQQIYRSGVPDDRLKVIGET-DKSGTFVRFWPSLDTFKGE 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V       ++  E       + F++ GG+K +++    N
Sbjct: 180 TEFQYDILAKRLRELSFLNSGVSIRLIDKRDNRE-------DHFHYEGGIKAFVEYLSRN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   +F   TEK G     VE A+ W +     +  + N I   +GGTH  G R A+
Sbjct: 233 KTPIHQNVFYFSTEKDGI---GVEVAMLWNDGFQENVYCFTNNIPQRDGGTHLVGFRTAM 289

Query: 339 TRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  IS   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNNYMDKEGFNKKSKISATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 350 ETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS+     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+  +Q++  
Sbjct: 410 CSERDPAFSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMLASQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+F+
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHIFI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D++   + L      G
Sbjct: 530 AQPPLYKVKKGKQEQYIKDDDAMDEYLMSIALDG 563



 Score =  136 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ LE   K  +  + + R+KGLGEM   QL ET M+ + R +++V +   +     T 
Sbjct: 719 FEEALEWLTKESRRGLAVQRYKGLGEMNPEQLWETTMNPDTRRMMQVTVKDAI----ATD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           +    LMG   + R  FI+E A   +++ 
Sbjct: 775 ELFTTLMGDAVEPRRAFIEENALKAENID 803


>gi|76798992|ref|ZP_00781191.1| DNA gyrase, B subunit [Streptococcus agalactiae 18RS21]
 gi|76585663|gb|EAO62222.1| DNA gyrase, B subunit [Streptococcus agalactiae 18RS21]
          Length = 599

 Score =  518 bits (1335), Expect = e-145,   Method: Composition-based stats.
 Identities = 228/614 (37%), Positives = 349/614 (56%), Gaps = 25/614 (4%)

Query: 81  VIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140
           ++DN++DE +AG+A  I+V ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAG
Sbjct: 1   IVDNSIDEALAGFAGHIKVYIEPDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAG 59

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKF    Y++SGGLHGVG SVVNALS +L V V +   +  Q++ RG+ ++ LE      
Sbjct: 60  GKFGGGGYKVSGGLHGVGSSVVNALSTQLDVKVYKNGKVHYQEYQRGVVVNDLEIIGDT- 118

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
           +  GT + F PDP+IF +   FD  +L K  Q  A+L+  ++   S  +E  E       
Sbjct: 119 DLSGTTVHFTPDPEIFTETTVFDFDKLAKRIQELAFLNRGLRISISDKREGQEVEKE--- 175

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
             +++ GG+ +Y++   EN+ +I         E  G    +VE A+ +       + S+ 
Sbjct: 176 --YHYEGGIGSYVEFINENKEVIFENPIYTDGELDGI---SVEVAMQYTTGYQETVMSFA 230

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I T EGGTHE G R ALTR I  YA+  +   +   ++  +D+      ++SV    P
Sbjct: 231 NNIHTHEGGTHEQGFRTALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNP 290

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F GQTKTKL + +  +       + F+ +L++NP  A K++E  I  S+ R+  ++ RE
Sbjct: 291 QFEGQTKTKLGNSEVVKITNRLFSEAFNRFLLENPQVAKKIVEKGILASKARIAAKRARE 350

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              +K+ +    LPGKLADCS N A   ELFIVEGDSAGGSAK  RNR  QA+LP+RGKI
Sbjct: 351 VTRKKSGLEISNLPGKLADCSSNNAEMNELFIVEGDSAGGSAKSGRNREFQAILPIRGKI 410

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556
           LNV  A  +KI  N++I  L  A+G    + +    +RY+K++IMTDADVDGAHI +LLL
Sbjct: 411 LNVEKATMDKILANEEIRSLFTAMGTGFGADFDVSKVRYQKLVIMTDADVDGAHIRTLLL 470

Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGK 611
           T  Y+ M  ++E  ++++  PP++ +  G++   Y       EE  ++ L+ +   G+ K
Sbjct: 471 TLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKAYIQPGVNQEEELRQALDTYS-SGRSK 529

Query: 612 IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERF 671
             + R+KGLGEM   QL ET MD   R + RV ++       +     + LMG + + R 
Sbjct: 530 PTVQRYKGLGEMDDHQLWETTMDPENRLMARVSVDD----AAEADKIFDMLMGDRVEPRR 585

Query: 672 KFIQERASFIDDVG 685
           +FI+  A +  ++ 
Sbjct: 586 EFIEANAVY-SNLD 598


>gi|254507351|ref|ZP_05119487.1| DNA gyrase, B subunit [Vibrio parahaemolyticus 16]
 gi|219549811|gb|EED26800.1| DNA gyrase, B subunit [Vibrio parahaemolyticus 16]
          Length = 805

 Score =  518 bits (1335), Expect = e-145,   Method: Composition-based stats.
 Identities = 227/566 (40%), Positives = 346/566 (61%), Gaps = 17/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I V
Sbjct: 2   SENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCQDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDNSVSVRDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS ++ +T+ R   I +Q +  G P +PL    +  +K GT I F P  + F + 
Sbjct: 121 SVVNALSKQVTLTIHRGGQIHTQTYHHGEPQAPLAVIGET-DKTGTEIRFWPSEETFSNT 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V      ++E        +++ F + GG++ ++     N
Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLRDERE------EDKQDHFMYEGGIQAFVDHLNTN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  ++F    E++      VE A+ W +     I  + N I   +GGTH +G R AL
Sbjct: 233 KTPIIEKVFHFNAERED--GIAVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLAGFRAAL 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLAD 455
           E+A+ +    +LV++P EA  +   +I+ +  R   RK      RK A+    LPGKLAD
Sbjct: 351 ESAMGEKLSEFLVEHPTEAKIVCTKIIDAARARDAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  DE+   + 
Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMNQY 556



 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G ++            LE   K  +  + + R+KGLGEM   QL ET MD   R ++
Sbjct: 708 IKRGERTQ---PVASFVDALEWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMM 764

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R  FI+E A  + ++ 
Sbjct: 765 QVTIEDAVG----ADQLFTTLMGDQVEPRRNFIEENALKVANLD 804


>gi|313667941|ref|YP_004048225.1| topoisomerase IV subunit B [Neisseria lactamica ST-640]
 gi|313005403|emb|CBN86837.1| topoisomerase IV subunit B [Neisseria lactamica 020-06]
          Length = 661

 Score =  518 bits (1335), Expect = e-145,   Method: Composition-based stats.
 Identities = 243/672 (36%), Positives = 352/672 (52%), Gaps = 38/672 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ Y  SSI +L+GLEPV+ RPGMY   T   +  H+  EVIDNA DE + G+A  I+
Sbjct: 2   AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATEID 58

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154
           V +  +G L+V DNGRGIPV  HP+    S +E++ T LHAGGKF+       Y  SGGL
Sbjct: 59  VQIHEDGSLSVHDNGRGIPVGLHPE-EGVSVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213
           HGVG+SV NALS  L VTV R+  I    F+ G  + PL +  K      GT +   PD 
Sbjct: 118 HGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRVWPDG 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     +    L ++ ++KA L   V+   +      +       + +++P GLK+YL
Sbjct: 178 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEARTQTWHYPDGLKSYL 233

Query: 274 QTKLENRS-----LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEG 327
              + +              +       +      +A+ W  E      SY N I T  G
Sbjct: 234 TDLIADAQEAVPLFSCENYISDDHNGDFSIGEGAAFALTWLGEGSCANESYVNLIPTPLG 293

Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           GTHE+GL+ A+   +  +  L     R + + SDD+      +LS  + +P+F GQTK K
Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRGVKVQSDDVFGKTAFVLSARVLDPQFQGQTKDK 353

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L + DA + V     DP + +L QN     K+ E  I +++ R+R    +++ +K     
Sbjct: 354 LTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSV--KKIEKKKGSGV 411

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKL DC        ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN      ++
Sbjct: 412 AVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +  N +I D+  A+G          D   LRY K+ I++DADVDG+HI  LLLT FY+  
Sbjct: 472 LFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531

Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614
             L+   H+++  PPLFR+    QG     +  YA D+     ILE  +K G  +    I
Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDSILERLQKEGVKETAYSI 591

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673
           SRFKGLGEM   QLK+T M  + R LL+V+I +  +   +T+D   KLMG  +A  R  +
Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETRDIFVKLMGKGEAAARRAW 649

Query: 674 IQERASFIDDVG 685
           ++      + + 
Sbjct: 650 MEREGDTAE-LD 660


>gi|261399940|ref|ZP_05986065.1| DNA topoisomerase IV, B subunit [Neisseria lactamica ATCC 23970]
 gi|269210391|gb|EEZ76846.1| DNA topoisomerase IV, B subunit [Neisseria lactamica ATCC 23970]
          Length = 661

 Score =  518 bits (1335), Expect = e-145,   Method: Composition-based stats.
 Identities = 243/672 (36%), Positives = 353/672 (52%), Gaps = 38/672 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ Y  SSI +L+GLEPV+ RPGMY   T   +  H+  EVIDNA DE + G+A  I+
Sbjct: 2   AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATAID 58

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154
           V +  +G L+V DNGRGIPV  HP+      +E++ T LHAGGKF+       Y  SGGL
Sbjct: 59  VQIHEDGSLSVHDNGRGIPVGLHPE-EGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213
           HGVG+SV NALS  L VTV R+  I    F+ G  + PL +  K      GT +   PD 
Sbjct: 118 HGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRVWPDG 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     +  + L ++ ++KA L   V+   +      +       + +++P GLK+YL
Sbjct: 178 KYFESPN-YSISELERLLRAKAVLLPGVRVSLT---RPVKGEDEARTQTWHYPDGLKSYL 233

Query: 274 QTKLENRS-----LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEG 327
              + +              +       +      +A+ W EE      SY N I T  G
Sbjct: 234 TDLIADAQEAVPLFSCENYISDDHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293

Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           GTHE+GL+ A+   +  +  L     R + + SDD+      +LS  + +P+F GQTK K
Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRGVKVQSDDVFGKTAFVLSARVLDPQFQGQTKDK 353

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L + DA + V     DP + +L QN     K+ E  I +++ R+R    +++ +K     
Sbjct: 354 LTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSV--KKIEKKKGSGV 411

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKL DC        ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN      ++
Sbjct: 412 AVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +  N +I D+  A+G          D   LRY K+ I++DADVDG+HI  LLLT FY+  
Sbjct: 472 LFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531

Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614
             L+   H+++  PPLFR+    QG     +  YA D+     ILE  +K G  +    I
Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDGILERLQKEGVKETAYSI 591

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673
           SRFKGLGEM   QLK+T M  + R LL+V+I +  +   +T+D   KLMG  +A  R  +
Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETRDIFVKLMGKGEAAARRAW 649

Query: 674 IQERASFIDDVG 685
           ++      + + 
Sbjct: 650 MEREGDTAE-LD 660


>gi|254472258|ref|ZP_05085658.1| DNA gyrase, B subunit [Pseudovibrio sp. JE062]
 gi|211958541|gb|EEA93741.1| DNA gyrase, B subunit [Pseudovibrio sp. JE062]
          Length = 817

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 242/583 (41%), Positives = 344/583 (59%), Gaps = 16/583 (2%)

Query: 25  KSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVID 83
                P++      + +  Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+D
Sbjct: 2   SETSTPENGGPEQANGAGEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVD 61

Query: 84  NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143
           N++DE +AG+A+ + V+L+ +G +TV DNGRGIPV+ HP+    S  E+I+T LHAGGKF
Sbjct: 62  NSIDEALAGHADYVTVTLNADGSVTVTDNGRGIPVDIHPE-EGISAAEVIMTQLHAGGKF 120

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS  L + + R +     +F  G    PLE       K 
Sbjct: 121 DSNSYKVSGGLHGVGVSVVNALSTTLDLRIYRNDKEHFIRFHHGESAGPLEVVGDAPGKS 180

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF P P+ F     FD   L    +  A+L+   +   + ++        P  EE 
Sbjct: 181 GTEVTFTPSPETFTKT-EFDYDTLEHRLRELAFLNSGARIILTDNR-----GVEPHVEEL 234

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTI 322
           Y+ GGL+ +++     +  +  E  T   EK G    TVE A+ W     E    + N I
Sbjct: 235 YYEGGLEAFVRYLDRAKHPLIEEPVTMMAEKDGI---TVEVAMWWNSSYHENVLCFTNNI 291

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  YA+ +   +        +D       +LSV + +P+F+
Sbjct: 292 PQRDGGTHLAGFRAALTRQLTGYADTSGLLKREKVSPTGEDCREGLSCVLSVKVPDPKFS 351

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VN 439
            QTK KLVS + +  VEN + +    +L +NP  A  ++  V+E +  R   RK RE   
Sbjct: 352 SQTKDKLVSSEVRPVVENLVGEALSTWLEENPAPAKSIVSKVVEAASAREAARKARELTR 411

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +  A   ELFIVEGDSAGGSAKQ R+RSNQAVLPL+GKILNV
Sbjct: 412 RKGALDIASLPGKLADCQERDASKAELFIVEGDSAGGSAKQGRDRSNQAVLPLKGKILNV 471

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTF 558
             A  +K+ ++Q+I  L+ ALG    ++    E LRY K+IIMTDADVDGAHI +LLLTF
Sbjct: 472 ERARFDKMISSQEIGTLITALGTGIGNEEFNLEKLRYHKIIIMTDADVDGAHIRTLLLTF 531

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
            +++M DLIE  ++++  PPL+++T+G    Y  DE   ++ L
Sbjct: 532 LFRQMPDLIENGYVYIAQPPLYKVTRGKSEQYLKDEAAFEEYL 574



 Score =  133 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 4/88 (4%)

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           Q +LE     G+  I + R+KGLGEM   QL ET +D N R+LL+V+I           D
Sbjct: 733 QALLEAVYAQGRKGISMQRYKGLGEMNPEQLWETTLDPNVRSLLQVKI----KEADAADD 788

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
              KLMG + + R  FIQ  A  + ++ 
Sbjct: 789 IFTKLMGDEVEPRRDFIQTNALSVANLD 816


>gi|222053121|ref|YP_002535483.1| DNA gyrase, B subunit [Geobacter sp. FRC-32]
 gi|221562410|gb|ACM18382.1| DNA gyrase, B subunit [Geobacter sp. FRC-32]
          Length = 794

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 239/579 (41%), Positives = 349/579 (60%), Gaps = 18/579 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            +N   S +Y A  I++LEGL  VR RP MYIG T  + LHHL  EV+DN++DE +AG+ 
Sbjct: 1   MSNDETSKDYGADKIKVLEGLSAVRKRPAMYIGSTSIQGLHHLVYEVVDNSIDEALAGHC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I V+++ +G +TVVDNGRGIP + HP    KS  E++LT LHAGGKFDN++Y++SGGL
Sbjct: 61  DDIAVTINVDGSVTVVDNGRGIPTDMHP-TEGKSAAEVVLTVLHAGGKFDNTSYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS +L + + R   IF Q +  G P  PLE   + +  RGT+I F PD +
Sbjct: 120 HGVGVSVVNALSKKLELEIRRDGKIFKQSYRCGDPQGPLEVVGETKK-RGTKIIFFPDDE 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     F    L +  +  A+L+  VK     ++         +  EF++ GG++++++
Sbjct: 179 IFET-TEFSFDILSQRLRELAFLNAGVKIKIVDER-------TEKVHEFFYEGGIRSFVE 230

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  +      EK G     +E A+ + +    ++ S+ N I T EGGTH  G
Sbjct: 231 YLNKNKTPIHPQPIFINGEKGGV---EMEIAMQYNDSYDEKVFSFANNINTHEGGTHLVG 287

Query: 334 LRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            + ALTR +  YA      + +  +I  +DL      ++SV I +P+F GQTKTKL + +
Sbjct: 288 FKAALTRTMNTYANTNNLLKNVKENISGEDLREGLTAVISVKISQPQFEGQTKTKLGNSE 347

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE  + +    YL +NP  A ++LE  I+ +  R   R+ R+   RK A+    LP
Sbjct: 348 VKGYVETLMNEKLATYLEENPQIAKRILEKSIDAARAREAARRARDLTRRKGALEVGTLP 407

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +      ELF+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++
Sbjct: 408 GKLADCQEKDPALCELFLVEGDSAGGSAKQGRDRKYQAILPLKGKILNVEKARFDKMLSS 467

Query: 511 QQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           Q+I  L+ ALG    +  +    LRY ++IIMTDADVDG+HI +LLLTFF+++M +LIE+
Sbjct: 468 QEIRTLIAALGTSVGKGDFDIAKLRYHRIIIMTDADVDGSHILTLLLTFFFRQMLELIER 527

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
            +L++  PPL++I +G K  Y  +E   Q  L E     
Sbjct: 528 GYLYIAQPPLYKIKRGKKEQYLKNEAALQSYLLEEGTED 566



 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           +++L  F +  K  + I R+KGLGEM   QL ET M    R LL+V+I   +    + ++
Sbjct: 710 EELLAFFLETAKKGLYIQRYKGLGEMNPEQLWETTMHPENRLLLQVKIEDTV----EAEE 765

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
               LMG + + R +FI+  A  + ++ 
Sbjct: 766 IFTVLMGDQVEPRREFIELNALNVSNLD 793


>gi|282854010|ref|ZP_06263347.1| DNA gyrase, B subunit, C-terminal domain protein [Propionibacterium
           acnes J139]
 gi|282583463|gb|EFB88843.1| DNA gyrase, B subunit, C-terminal domain protein [Propionibacterium
           acnes J139]
          Length = 698

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 234/703 (33%), Positives = 336/703 (47%), Gaps = 56/703 (7%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
               S S  Y A ++ +LEGLE VR RP MYIG TD + L H   E+ DN +DE +AGY 
Sbjct: 1   MRTASTSREYGAKNLLVLEGLEAVRKRPAMYIGSTDTRGLMHCLWEIFDNGVDEALAGYG 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             I V+L+  G + V D GRGIPV+  P+    S LE++ T LHAGGKF    Y +SGGL
Sbjct: 61  RRITVTLEKAGSILVTDEGRGIPVDVEPR-TGLSGLEVVYTKLHAGGKFGGGAYNVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP---------------LSPLEKKEKV 199
           HGVG SVVNA+S  L V V R++T++   F RG+P                   +  +  
Sbjct: 120 HGVGASVVNAVSVRLDVEVDRKSTVWGMSFRRGVPGVFEGEGPDAPFTPGSGVRKVGKAK 179

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
           R   GTR+ + PD +IF   A    ++L    +  A+L   ++   + ++ I       +
Sbjct: 180 RGVTGTRVRYWPDRQIFLPDAKLSWSKLADRARQTAFLVPGLEIVITDERGIQTDPETGD 239

Query: 260 K-----EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTH 298
                 E   F GG+  + +    ++ + +     G+T                      
Sbjct: 240 VLETVSETMRFDGGISEFAEYLATDQPVNNVMRLQGETSFTETVPMLDENGGMTPTDVDR 299

Query: 299 RGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKK-YAELTQNKRAIS 356
              V+ A+ W         S+ N I T +GGTH  G    L R            K +  
Sbjct: 300 DLGVDIALRWGTGYDTTVRSFVNIIATPKGGTHVQGFEQGLLRAFSAGLEGTRILKSSEE 359

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RTVENALRDPFDHYLVQNP 412
           I+ DD++     +++V + EP+F GQTK  L +   +    R VE+ +          + 
Sbjct: 360 IVKDDVLEGMTAVVTVSLAEPQFEGQTKEVLGTPPVRRLVARIVEDKMTAFLTSAKAADK 419

Query: 413 IEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
             A  L+E V+  S  R+  R  +    RK A+    LP KL DC  +    TELFIVEG
Sbjct: 420 PVARALMEKVVNASRTRVAARAHKENQRRKNALESSHLPPKLKDCRSSDPDVTELFIVEG 479

Query: 472 DSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE 531
           DSA G+A  ARN  +QA+LP+RGKILNV  A    +  N +   ++Q +G  +   +  +
Sbjct: 480 DSALGTANVARNSEHQALLPIRGKILNVQKADLGAMLKNAECASIIQVVGAGSGKTFDLD 539

Query: 532 DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-----TQG- 585
             RY KVI M DAD DGAHI  LL T F++ M  ++E   +F   PPL R       +G 
Sbjct: 540 QARYGKVIFMADADSDGAHIRCLLATLFFRYMRPMVEAGRVFSAVPPLHRFELINPKRGM 599

Query: 586 TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645
            K +Y + +   Q+   +  K G    E  R+KGLGEM ASQLKET MD   RTL R+ +
Sbjct: 600 DKYLYTYTDADYQRTAAQLAKKGVRFKEPQRYKGLGEMDASQLKETTMDPRHRTLRRITV 659

Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVGT 686
           +       + + +   LMG +   R +FI E A  +D   +  
Sbjct: 660 DD----AAEAEGTFEILMGNEVAPRKQFIVEGAYRLDAEQIDA 698


>gi|117619604|ref|YP_854532.1| DNA gyrase, B subunit [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117561011|gb|ABK37959.1| DNA gyrase, B subunit [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 803

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 234/575 (40%), Positives = 355/575 (61%), Gaps = 19/575 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
           + + YD+S+I++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGY + I+
Sbjct: 2   SENTYDSSNIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGYCSDIQ 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V +  +G ++V DNGRGIPV+ HP+   +S  E+I+T LHAGGKFD+++Y++SGGLHGVG
Sbjct: 62  VKIHSDGSVSVRDNGRGIPVDIHPE-EGRSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D
Sbjct: 121 VSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSD 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      +++  E         F + GG+K +++   +
Sbjct: 180 TL-FHYEILAKRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVEYLNQ 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G R A
Sbjct: 232 NKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTA 288

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  
Sbjct: 289 LTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTA 348

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454
           VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLA
Sbjct: 349 VEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLA 408

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++ 
Sbjct: 409 DCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVG 468

Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            L+ ALGC   R +Y  + LRY  +IIMTDADVDGAHI +LLLTFFY++M ++IE+ +++
Sbjct: 469 TLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGAHIRTLLLTFFYRQMPEIIERGYVY 528

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +  PPL+++ +G +  Y  DE+   +        G
Sbjct: 529 IAQPPLYKVKKGKQEQYLKDEDALLQYQTAMALDG 563



 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G K           + +E     GK  I I R+KGLGEM   QL ET MD   R +L
Sbjct: 706 IKRGEKV---KPVASFVEAVEWLMGEGKRGIYIQRYKGLGEMNPDQLWETTMDPEARRML 762

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           RV I+  +          + LMG   + R  FI+  A  + ++ 
Sbjct: 763 RVTIDDAVG----ADQLFSTLMGDAVEPRRDFIETNALRVANLD 802


>gi|90581121|ref|ZP_01236920.1| DNA gyrase subunit B [Vibrio angustum S14]
 gi|90437642|gb|EAS62834.1| DNA gyrase subunit B [Vibrio angustum S14]
          Length = 805

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 17/574 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I V
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCEDIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +G ++V D+GRGIP E H +    S  E+I+T LHAGGKFD+++Y++ GGLHGVG+
Sbjct: 62  TIHEDGSVSVSDDGRGIPTEMHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVPGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+++ +T+ R   I+ Q +  G+P +PL          GTRI F P    F + 
Sbjct: 121 SVVNALSEKVELTIQRAGHIYQQVYRHGVPDAPLAVIGDTEK-TGTRIRFWPSEDTFTNI 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V    S ++E        +++ F + GG++ +++    N
Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSINLSDERE------EGKEDHFMYEGGIRAFVEHLNRN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  ++F   +E+      +VE A+ W +     I  + N I   +GGTH +G R AL
Sbjct: 233 KTPIHPKVFHFDSERDD--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGAL 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKAAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+A+ +    +L++NP +A  +   +I+ S  R   RK R    RK A+    LPGKLAD
Sbjct: 351 ESAMNEKLAEFLLENPSDAKTVCSKIIDASRAREAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ A+GC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ H+++
Sbjct: 471 LITAMGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  D+E   +         
Sbjct: 531 AQPPLYKVKKGKQEQYIKDDEDMNQYQTTLALDN 564



 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            +  LE   K  +  + + R+KGLGEM   QL ET MD   R +++V IN  +       
Sbjct: 720 FKGALEWLNKESRRGLSLQRYKGLGEMNPEQLWETTMDPESRRMMQVTINDAV----AAD 775

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           +    LMG + + R  FI+E A  + ++ 
Sbjct: 776 ELFTCLMGDQVEPRRNFIEENALKVANLD 804


>gi|254805438|ref|YP_003083659.1| topoisomerase IV subunit B [Neisseria meningitidis alpha14]
 gi|304386839|ref|ZP_07369103.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Neisseria meningitidis
           ATCC 13091]
 gi|254668980|emb|CBA07308.1| topoisomerase IV subunit B [Neisseria meningitidis alpha14]
 gi|254671649|emb|CBA09375.1| topoisomerase IV subunit B [Neisseria meningitidis alpha153]
 gi|304339093|gb|EFM05183.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Neisseria meningitidis
           ATCC 13091]
 gi|308389804|gb|ADO32124.1| topoisomerase IV subunit B [Neisseria meningitidis alpha710]
          Length = 661

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 243/672 (36%), Positives = 353/672 (52%), Gaps = 38/672 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ Y  SSI +L+GLEPV+ RPGMY   T   +  H+  EVIDNA DE + G+A  I+
Sbjct: 2   AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATAID 58

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154
           V +  +G L+V DNGRGIPV  HP+      +E++ T LHAGGKF+       Y  SGGL
Sbjct: 59  VQIHEDGSLSVRDNGRGIPVGLHPE-EGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213
           HGVG+SV NALS  L VTV R+  I    F+ G  + PL +  K      GT +   PD 
Sbjct: 118 HGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRVWPDG 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     +    L ++ ++KA L   V+   +      +       + +++P GLK+YL
Sbjct: 178 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEAHTQTWHYPDGLKSYL 233

Query: 274 QTKLENRS-----LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEG 327
              + +              + +     +      +A+ W EE      SY N I T  G
Sbjct: 234 TDLIADAQEAVPLFSCENYISDEHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293

Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           GTHE+GL+ A+   +  +  L     R + + SDD+      +LS  + +P+F GQTK K
Sbjct: 294 GTHEAGLKQAVFNAVSNFINLHNLLPRGVKVQSDDVFGKTAFVLSARVLDPQFQGQTKDK 353

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L + DA + V     DP + +L QN     K+ E  I +++ R+R    +++ +K     
Sbjct: 354 LTNRDALKLVATVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSV--KKIEKKKGSGV 411

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKL DC        ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN      ++
Sbjct: 412 AVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +  N +I D+  A+G          D   LRY K+ I++DADVDG+HI  LLLT FY+  
Sbjct: 472 LFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531

Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614
             L+   H+++  PPLFR+    QG     +  YA D+     ILE  +K G  +    I
Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDSILERLQKEGVKETAYSI 591

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673
           SRFKGLGEM   QLK+T M  + R LL+V+I +  +   +T+D   KLMG  +A  R  +
Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETRDIFVKLMGKGEAAARRAW 649

Query: 674 IQERASFIDDVG 685
           ++      + + 
Sbjct: 650 MEREGDTAE-LD 660


>gi|107023297|ref|YP_621624.1| DNA topoisomerase IV subunit B [Burkholderia cenocepacia AU 1054]
 gi|116690380|ref|YP_836003.1| DNA topoisomerase IV subunit B [Burkholderia cenocepacia HI2424]
 gi|170733717|ref|YP_001765664.1| DNA topoisomerase IV subunit B [Burkholderia cenocepacia MC0-3]
 gi|254247559|ref|ZP_04940880.1| DNA topoisomerase [Burkholderia cenocepacia PC184]
 gi|105893486|gb|ABF76651.1| DNA topoisomerase IV subunit B [Burkholderia cenocepacia AU 1054]
 gi|116648469|gb|ABK09110.1| DNA topoisomerase IV subunit B [Burkholderia cenocepacia HI2424]
 gi|124872335|gb|EAY64051.1| DNA topoisomerase [Burkholderia cenocepacia PC184]
 gi|169816959|gb|ACA91542.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia cenocepacia
           MC0-3]
          Length = 660

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 245/676 (36%), Positives = 363/676 (53%), Gaps = 47/676 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +  S  Y  +SI++L+GLEPV+ RPGMY   T  +   H+  EVIDNA DE + GY 
Sbjct: 1   MSTKKPSAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYG 57

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151
             I V+L  +  ++V D+GRGIP   HP+      +EI+ T LHAGGKFD      Y  S
Sbjct: 58  KQITVTLHADQSVSVEDDGRGIPFGMHPE-EGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITF 209
           GGLHGVG+SV NAL+  L VTV R   I    F+ G  + PL  +   R   K GTR+  
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKIAELGFADGDVVKPLSTQGAGRGEKKSGTRVQV 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P+PK F          L ++ +SKA L   V+     +K         E++ + +  GL
Sbjct: 177 WPNPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVVLVNEK-------TGERQTWKYEDGL 228

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE---------WAIAWCEENP-EITSYC 319
           + YL  ++    L+       + E+    R T E         W +AW EE      SY 
Sbjct: 229 RGYLLDEMNGSELLIP---LFEGERFADSRSTDETFAEGEGASWVVAWSEEGSLVRESYV 285

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPE 378
           N I T  GGTHESGLR  L + +K + EL     + + ++++D+      +LS  + +P+
Sbjct: 286 NLIPTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQ 345

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
           F GQ K +L S DA + V +  R   + +L Q+     KL E VI++++ R R  ++ E 
Sbjct: 346 FQGQIKERLNSRDAVKLVSSFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKVEK 405

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +  L  PGKL DC        ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN
Sbjct: 406 RKSSGVAVL--PGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLN 463

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLL 555
                 +++  N ++ D+  A+G    S        +LRY K+ I++DADVDG+HI  LL
Sbjct: 464 TWETERDRLFANNEVHDISVAIGVDPHSPDDTVDLSNLRYGKICILSDADVDGSHIQVLL 523

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG- 608
           LT F++    LIE+ H+++  PPLFR+    +G K    +YA D+   + IL++ +K G 
Sbjct: 524 LTLFFKHFPQLIERGHVYVARPPLFRVDAPARGKKPAQKLYALDDGELEAILDKLRKDGV 583

Query: 609 -KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-K 666
              +  ISRFKGLGEM A QL +T M+ + R L+ V++       + T   +  LMG  +
Sbjct: 584 RDTQWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKL--GELDYEATVARMTMLMGKGE 641

Query: 667 ADERFKFIQERASFID 682
           A  R  +++E+ + ++
Sbjct: 642 AAARRGWLEEKGNDVE 657


>gi|16272510|ref|NP_438724.1| DNA gyrase subunit B [Haemophilus influenzae Rd KW20]
 gi|1170145|sp|P43701|GYRB_HAEIN RecName: Full=DNA gyrase subunit B
 gi|1573554|gb|AAC22225.1| DNA gyrase, subunit B (gyrB) [Haemophilus influenzae Rd KW20]
          Length = 806

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 233/578 (40%), Positives = 352/578 (60%), Gaps = 19/578 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           +++ +DNY ASSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   SETTNDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCS 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V D+G GIPV+ HP+    S  E+I+T LHAGGKFD+++Y++SGGLH
Sbjct: 62  DIIVTIHDDNSVSVQDDGGGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD+L +T+ RQ  +  Q +  G P SPL    +     GT + F P   I
Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGET-EATGTTVRFWPSSDI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     FD   L K  +  ++L+  V       ++ +E       + F++ GG++ +++ 
Sbjct: 180 FA-ITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE-------DHFHYEGGIQAFVEY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGL 334
             +N++ I  + F    EK G     VE A+ W +  N  +  + N I   +GGTH +G 
Sbjct: 232 LNKNKNPIHPKPFYFTAEKDGI---GVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGF 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y E      K  ++   DD     V I+SV + +P+F+ QTK KLVS + 
Sbjct: 289 RGALTRSLNSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEV 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451
           +  VE+A+ +    YL++NP +A  ++  +I  +  R   RK R    RK A+    LPG
Sbjct: 349 KSAVESAMNEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSAK  R+R  QA+LPL+GKILNV  A  +K+ ++Q
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQ 468

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ 
Sbjct: 469 EVGTLITALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++++  PPL+++ +G +  Y  D +  ++        G
Sbjct: 529 YVYIAQPPLYKVKKGKQERYIKDADEMEQYELTLALDG 566



 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 8/104 (7%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K          ++ +E   K  +  +E+ R+KGLGEM A QL ET MD N R +L
Sbjct: 710 VIRGEKVQPVRS---FEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRML 766

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R +FI+  A    ++ 
Sbjct: 767 KVSIKDAV----AADQLFTTLMGDEVEPRREFIELNALRA-NLD 805


>gi|256370765|ref|YP_003108590.1| DNA gyrase B subunit [Candidatus Sulcia muelleri SMDSEM]
 gi|256009557|gb|ACU52917.1| DNA gyrase B subunit [Candidatus Sulcia muelleri SMDSEM]
          Length = 634

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 249/654 (38%), Positives = 373/654 (57%), Gaps = 30/654 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY + +I+ L+G+E +R+RP MYIG      LH L +EVIDN++DE ++GY   I ++ 
Sbjct: 2   ENYTSKNIQYLDGIEHIRLRPAMYIGDIGINGLHQLLTEVIDNSIDEYLSGYCTKIRITF 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             N ++TV+DNGRGIPV+ + K    STLE+I+T + AGGKFD   Y+ISGGLHGVGIS 
Sbjct: 62  HKNEYITVLDNGRGIPVDLY-KNKGISTLEVIMTKVGAGGKFDKKAYKISGGLHGVGISC 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK--KEKVRNKRGTRITFRPDPKIFGDK 219
           VNALS  L   + R   I+ Q +S+GIP++ L+K  ++  +  RGT ITF+ +   F  K
Sbjct: 121 VNALSCYLLARIFRNGKIYEQIYSKGIPITKLKKLDQKNKKQMRGTEITFKVEK-YFFGK 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             FD   +L   +  +YL+  +       +    K         Y   G+K ++    ++
Sbjct: 180 KIFDYNLILNRIKELSYLNKGLLLILIDKRFYPNKKEFC-----YSKKGIKEFILNLSKD 234

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
           ++ +    +  K  KK      +++  ++ E   +I SY N I T  GGTH SG + ALT
Sbjct: 235 KNYLKKFFYLKKKNKKIQLELAMKFNSSFKE---KIYSYVNNIPTPSGGTHISGFKRALT 291

Query: 340 RGI--KKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           +      Y      K  I I   D+    + I+S+ I  P+F GQTK KL + +    VE
Sbjct: 292 KTFKKFYYKYNLYKKYKIEISGKDIREGIIAIISMRIANPQFEGQTKKKLGNNEIIGLVE 351

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             + +  + ++  NP+   K+L  V    +     +K R + +K  I    LP KLADCS
Sbjct: 352 KIVSNELNLFINANPLLKKKILNKVFLTVKALQAYKKVRNLIQKQII----LPLKLADCS 407

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
            N  +  E+++VEGDSAGG+AKQ R R  QAV PLRGKILNV  +  EKI  N++I +L 
Sbjct: 408 SNNHNLCEIYLVEGDSAGGTAKQGRERKFQAVFPLRGKILNVEKSMKEKIFENEEIRNLF 467

Query: 518 QALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             LG   R +        +++RY+K+IIMTDAD+DG+HI++L+LTFF++ +  LIE+ ++
Sbjct: 468 SVLGIFLRKKEKKIVLNIKNIRYKKIIIMTDADIDGSHISTLILTFFFRNLKILIEKGYI 527

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++ +PPLF I    K +YA +E+ K+KIL+         I I R+KGLGEM A QL ET 
Sbjct: 528 YIATPPLFLIKHFNKKLYAWNEKEKEKILKNIG--NLKGIHIQRYKGLGEMDAEQLWETT 585

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           M+   RTL +V+I+    + K+     + LMG    +R KFI++ A F  ++  
Sbjct: 586 MNPLNRTLRQVKID----NFKNANYIFSMLMGKNVFKRRKFIEQNALFA-NIDA 634


>gi|121635323|ref|YP_975568.1| DNA topoisomerase IV subunit B [Neisseria meningitidis FAM18]
 gi|161870530|ref|YP_001599702.1| DNA topoisomerase IV subunit B [Neisseria meningitidis 053442]
 gi|120867029|emb|CAM10792.1| topoisomerase IV subunit B [Neisseria meningitidis FAM18]
 gi|161596083|gb|ABX73743.1| topoisomerase IV subunit B [Neisseria meningitidis 053442]
 gi|325132822|gb|EGC55502.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis M6190]
 gi|325134784|gb|EGC57421.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis M13399]
 gi|325138725|gb|EGC61277.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis ES14902]
 gi|325198780|gb|ADY94236.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis G2136]
          Length = 661

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 244/672 (36%), Positives = 352/672 (52%), Gaps = 38/672 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ Y  SSI +L+GLEPV+ RPGMY   T   +  H+  EVIDNA DE + G+A  I+
Sbjct: 2   AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATAID 58

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154
           V +  +G L+V DNGRGIPV  HP+      +E++ T LHAGGKF+       Y  SGGL
Sbjct: 59  VQIHEDGSLSVRDNGRGIPVGLHPE-EGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213
           HGVG+SV NALS  L VTV R+  I    F+ G  + PL +  K      GT +   PD 
Sbjct: 118 HGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRVWPDG 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     +    L ++ ++KA L   V+   +      +       + +++P GLK+YL
Sbjct: 178 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEAHTQTWHYPDGLKSYL 233

Query: 274 QTKLENRSLISSEIFTGKTEKKGTH-----RGTVEWAIAWCEENPE-ITSYCNTILTDEG 327
              + +                G +          +A+ W EE      SY N I T  G
Sbjct: 234 TDLIADAQEAVPIFSCENYISDGHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293

Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           GTHE+GL+ A+   +  +  L     R + + SDD+      +LS  + +P+F GQTK K
Sbjct: 294 GTHEAGLKQAVFNAVSNFINLHNLLPRGVKVQSDDVFGKTAFVLSARVLDPQFQGQTKDK 353

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L + DA + V     DP + +L QN     K+ E  I +++ R+R    +++ +K     
Sbjct: 354 LTNRDALKLVATVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSV--KKIEKKKGSGV 411

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKL DC        ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN      ++
Sbjct: 412 AVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +  N +I D+  A+G          D   LRY K+ I++DADVDG+HI  LLLT FY+  
Sbjct: 472 LFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531

Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614
             L+   H+++  PPLFR+    QG     +  YA D+     ILE  +K G  +    I
Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDGILERLQKEGVKETAYSI 591

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673
           SRFKGLGEM   QLK+T M  + R LL+V+I +  +   +T+D   KLMG  +A  R  +
Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETRDIFVKLMGKGEAAARRAW 649

Query: 674 IQERASFIDDVG 685
           ++      + + 
Sbjct: 650 MEREGDTAE-LD 660


>gi|93007238|ref|YP_581675.1| DNA topoisomerase IV subunit B [Psychrobacter cryohalolentis K5]
 gi|92394916|gb|ABE76191.1| DNA topoisomerase IV subunit B [Psychrobacter cryohalolentis K5]
          Length = 628

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 256/646 (39%), Positives = 378/646 (58%), Gaps = 26/646 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y+A S+ +LEGLEPVR RPGMY   TD    +HL  EVIDN++DE +AGYA  I+V L
Sbjct: 2   SQYNAQSLEVLEGLEPVRRRPGMY---TDTTRPNHLAQEVIDNSVDEALAGYAKTIKVQL 58

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G L+V D+GRG+P + HP+F N+S +E+ILT LHAGGKF  S YE+SGGLHGVGISV
Sbjct: 59  HSDGSLSVEDDGRGMPTDIHPEF-NQSGIELILTRLHAGGKFSTSNYEVSGGLHGVGISV 117

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + VTV R +T F   F  G P++PL +     + KRGT++ F  D   F D  
Sbjct: 118 VNALSTRVEVTVWRDSTQFDMAFENGAPVTPLTEAVSSNKRKRGTKVHFWADGS-FFDTP 176

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F+  +L    ++KA L+  +   ++ D          EK  + F  G+  YL  +L+  
Sbjct: 177 KFNVKQLKHNLKAKAVLAAGLTIEFTDD-------INDEKVVWQFTDGVVEYLSEQLDGL 229

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +    F    + K   R  + +A++W  +       SY N I T +GGTH +GLR  +
Sbjct: 230 ETLPEAPFYYNYDAKAGERAAITFALSWLPDGGTPVQESYVNLIPTAQGGTHVNGLRTGI 289

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ ++     R++ + ++D+      ILS+   EP+F+GQTK +L S +A   V+
Sbjct: 290 LEALREFCDIHNLLPRSVKLTAEDVWDGVNYILSLKFSEPQFSGQTKERLSSREAAGAVQ 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
              +D F  +L Q+    T++ E  I ++  RL+    ++V RK   +   LPGKLADC 
Sbjct: 350 TLAKDAFSLWLNQHADMGTQIAELAISKAGRRLK--SAKKVARKKITQGPALPGKLADCR 407

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
            ++  G ELF+VEGDSAGGSAKQAR+R  QA+LPLRGKILN     S+ + ++Q+I D+ 
Sbjct: 408 GDLRDGAELFLVEGDSAGGSAKQARDRHYQAILPLRGKILNTWEVSSDTVLSSQEIHDIA 467

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S     +LRY+KV I+ DAD DG HIA+L+   F +    L++  HLF+  P
Sbjct: 468 IAIGVDPASDDL-SELRYDKVCILADADSDGLHIATLICALFVKHFPALVDAGHLFVAMP 526

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+R+    +  YA DE   Q IL      G  K +I+RFKGLGEM A QL+ET M+ + 
Sbjct: 527 PLYRVDVAKEVHYALDETELQHILANVP--GNKKAQITRFKGLGEMSAEQLRETTMNRDT 584

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           R L+++    D++ +  T   ++ L+  K A +R  +++++ +  D
Sbjct: 585 RRLVQL----DMDDMVLTNSVMDMLLAKKRAADRKIWLEDKGNLAD 626


>gi|325989383|ref|YP_004249082.1| DNA gyrase subunit B [Mycoplasma suis KI3806]
 gi|323574468|emb|CBZ40118.1| DNA gyrase subunit B [Mycoplasma suis]
          Length = 655

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 232/660 (35%), Positives = 349/660 (52%), Gaps = 28/660 (4%)

Query: 29  IPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDE 88
             +     N + +  Y  SSI++LEGLE +R+RPGMYIG    + LHHL  E +DNA+DE
Sbjct: 2   STEEKKLINPTPNVEYGDSSIQVLEGLEAIRVRPGMYIGSLGVEGLHHLIWEALDNAVDE 61

Query: 89  VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148
             AGYA  I+++L+    ++V DNGRGIP+  +P+    S +  I T LHAGGKF+NS+Y
Sbjct: 62  ATAGYATEIKLTLEEEHIVSVEDNGRGIPIGINPQ-TGLSNIVTIFTHLHAGGKFNNSSY 120

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE--KKEKVRNKRGTR 206
           + SGGLHGVGI  VNALS  L V V R+      KF+ G  L        E V +K GT+
Sbjct: 121 KTSGGLHGVGIKCVNALSTFLEVNVCREGKEVFTKFTEGGKLESQPSVISESVGSKTGTK 180

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I ++PD  +      +D   + +  Q+ +YL+  +   +       E     E E+F   
Sbjct: 181 IRWQPDFSVLER-NDYDIGLIKERLQNLSYLNKNLSFIF-------ENKNTGEVEQFLSS 232

Query: 267 GGLKTYLQTKLENRSLISS-------EIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYC 319
            GL  ++++  +    +         E    K E   + R  V +  +   ++P I S+C
Sbjct: 233 QGLADWVESINQGFETVHPIQNIVIEEQQVKKKEAVNSLRCEVSFQYSLERDHPVIYSFC 292

Query: 320 NTILTDEGGTHESGLRVALTRGIKKY-AELTQNKRAISIISDDLMISAVGILSVFIREPE 378
           N I T  GG H   ++  +   +++Y  +          I +D++     ++SV+  +P 
Sbjct: 293 NNIKTSLGGVHLETVKEGILSCVRQYAEDWKIIDDKYKWIKEDVISGISLVVSVYYTDPS 352

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER-LRRRKQRE 437
           + GQTK  L+S + +  +   +          N   A  +L  + +   +R  R +    
Sbjct: 353 YKGQTKETLISNEIRPILREQIEGKLHTSFQDNIEVAKLILGHIQQEYRKRINREQMLEM 412

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
             +      L    KLADC+      +EL+IVEGDSAGGSAK ARNR  QA+LP++GK+ 
Sbjct: 413 SKKIHKENLLGFAEKLADCTIKNPEFSELYIVEGDSAGGSAKGARNREFQAILPIKGKLA 472

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557
           N AS    KI +N+++ +L+ A+GC     +    LRY K+I+MTDADVDG+HI  L++ 
Sbjct: 473 N-ASKKKNKIFDNEEVKNLITAIGCSYGHNFDISKLRYNKIILMTDADVDGSHIQVLIMN 531

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
           FFY+ M  L+E  H+++   PL++ +   +++Y  DEE K++     K +     E SRF
Sbjct: 532 FFYKYMKPLLENGHVYIARSPLYKASSKKETIYLLDEEEKREFE---KNNKSSSYEFSRF 588

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           KGLGEM  +QL ET MD  +RT L+V+I  D      TQ ++ KLMG K   R  FI E 
Sbjct: 589 KGLGEMSPAQLWETTMDPKRRTFLQVQIIDDPK----TQATMEKLMGAKVKPRKIFITEN 644


>gi|261250636|ref|ZP_05943211.1| DNA gyrase subunit B [Vibrio orientalis CIP 102891]
 gi|260939205|gb|EEX95192.1| DNA gyrase subunit B [Vibrio orientalis CIP 102891]
          Length = 805

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 230/566 (40%), Positives = 347/566 (61%), Gaps = 17/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I V
Sbjct: 2   SENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+++ +T+ R     +Q +  G P +PL       +K GT+I F P  + F + 
Sbjct: 121 SVVNALSEKVTLTIHRGGHTHTQTYHHGEPQAPLAVVGDT-DKTGTQIRFWPSGETFTNT 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V      ++E        + + F F GG++ ++     N
Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIMLKDERE------EDKSDHFMFEGGIQAFVDHLNTN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  +IF    E++     +VE A+ W +     I  + N I   +GGTH +G R AL
Sbjct: 233 KTPIIEKIFHFDFERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAL 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+A+ +    +LV+NP EA  +   +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 351 ESAMGEKLSEFLVENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  DE+   + 
Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMNQY 556



 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           + LE   K  +  + + R+KGLGEM   QL ET MD   R +++V I   +         
Sbjct: 722 EALEWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVG----ADQL 777

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
              LMG + + R  FI+E A  + ++ 
Sbjct: 778 FTTLMGDQVEPRRNFIEENALKVANLD 804


>gi|15677530|ref|NP_274686.1| DNA topoisomerase IV subunit B [Neisseria meningitidis MC58]
 gi|7226935|gb|AAF42030.1| topoisomerase IV subunit B [Neisseria meningitidis MC58]
 gi|316984829|gb|EFV63786.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis H44/76]
 gi|325140855|gb|EGC63365.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis CU385]
 gi|325199724|gb|ADY95179.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis H44/76]
          Length = 661

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 244/672 (36%), Positives = 354/672 (52%), Gaps = 38/672 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ Y  SSI +L+GLEPV+ RPGMY   T   +  H+  EVIDNA DE + G+A  I+
Sbjct: 2   AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNASDEALGGFATAID 58

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154
           V +  +G L+V DNGRGIPV  HP+    S +E++ T LHAGGKF+       Y  SGGL
Sbjct: 59  VQIHEDGSLSVHDNGRGIPVGLHPE-EGVSVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213
           HGVG+SV NALS  L VTV R+  I    F+ G  + PL +  K      GT +   PD 
Sbjct: 118 HGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRVWPDG 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     +    L ++ ++KA L   V+   +      +       + +++P GLK+YL
Sbjct: 178 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEAHTQTWHYPDGLKSYL 233

Query: 274 QTKLENRS-----LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEG 327
              + +              + +     +      +A+ W EE      SY N I T  G
Sbjct: 234 TDLIADAQEAVPLFSCENYISDEHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293

Query: 328 GTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           GTHE+GL+ A+   +  +  L     R + + SDD+      +LS  + +P+F GQTK K
Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRGVKVQSDDVFGKTAFVLSARVLDPQFQGQTKDK 353

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L + DA + V     DP + +L QN     K+ E  I +++ R+R    +++ +K     
Sbjct: 354 LTNRDALKLVATVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSV--KKIEKKKGSGV 411

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKL DC        ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN      ++
Sbjct: 412 AVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDL---RYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +  N +I D+  A+G          DL   RY K+ I++DADVDG+HI  LLLT FY+  
Sbjct: 472 LFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531

Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614
             L+   H+++  PPLFR+    QG     +  YA D+     ILE  +K G  +    I
Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDSILERLQKEGVKETAYSI 591

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673
           SRFKGLGEM   QLK+T M  + R LL+V+I +  +   +T+D   KLMG  +A  R  +
Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETRDIFVKLMGKGEAAARRAW 649

Query: 674 IQERASFIDDVG 685
           ++      + + 
Sbjct: 650 MEREGDTAE-LD 660


>gi|218768702|ref|YP_002343214.1| DNA topoisomerase IV subunit B [Neisseria meningitidis Z2491]
 gi|121052710|emb|CAM09053.1| topoisomerase IV subunit B [Neisseria meningitidis Z2491]
 gi|319410935|emb|CBY91330.1| topoisomerase IV subunit B [Neisseria meningitidis WUE 2594]
          Length = 661

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 243/672 (36%), Positives = 353/672 (52%), Gaps = 38/672 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ Y  SSI +L+GLEPV+ RPGMY   T   +  H+  EVIDNA DE + G+A  I+
Sbjct: 2   AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATAID 58

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154
           V +  +G L+V DNGRGIPV  HP+      +E++ T LHAGGKF+       Y  SGGL
Sbjct: 59  VQIHEDGSLSVRDNGRGIPVGLHPE-EGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213
           HGVG+SV NALS  L VTV R+  I    F+ G  + PL +  K      GT +   PD 
Sbjct: 118 HGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRVWPDG 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     +    L ++ ++KA L   V+   +      +       + +++P GLK+YL
Sbjct: 178 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEAHTQTWHYPDGLKSYL 233

Query: 274 QTKLENRS-----LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEG 327
              + +              + +     +      +A+ W EE      SY N I T  G
Sbjct: 234 TDLIADAQEAVPLFSCENYISDEHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293

Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           GTHE+GL+ A+   +  +  L     R + + SDD+      +LS  + +P+F GQTK K
Sbjct: 294 GTHEAGLKQAVFNAVSNFINLHNLLPRGVKVQSDDVFGKTAFVLSARVLDPQFQGQTKDK 353

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L + DA + V     DP + +L QN     K+ E  I +++ R+R    +++ +K     
Sbjct: 354 LTNRDALKLVATVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSV--KKIEKKKGSGV 411

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKL DC        ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN      ++
Sbjct: 412 AVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +  N +I D+  A+G          D   LRY K+ I++DADVDG+HI  LLLT FY+  
Sbjct: 472 LFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531

Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614
             L+   H+++  PPLFR+    QG     +  YA D+     ILE  +K G  +    I
Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDGILERLQKEGVKETAYSI 591

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673
           SRFKGLGEM   QLK+T M  + R LL+V+I +  +   +T+D   KLMG  +A  R  +
Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETRDIFFKLMGKGEAAARRAW 649

Query: 674 IQERASFIDDVG 685
           ++      + + 
Sbjct: 650 MEREGDTAE-LD 660


>gi|325142847|gb|EGC65215.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis 961-5945]
          Length = 661

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 242/672 (36%), Positives = 348/672 (51%), Gaps = 38/672 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ Y  SSI +L+GLEPV+ RPGMY   T   +  H+  EVIDNA DE + G+A  I+
Sbjct: 2   AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATAID 58

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154
           V +  +G L+V DNGRGIPV  HP+      +E++ T LHAGGKF+       Y  SGGL
Sbjct: 59  VQIHEDGSLSVRDNGRGIPVGLHPE-EGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213
           HGVG+SV NALS  L VTV R+  I    F+ G  + PL +  K      GT +   PD 
Sbjct: 118 HGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRVWPDG 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     +    L ++ ++KA L   V+   +      +       + +++P GLK+YL
Sbjct: 178 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEAHTQTWHYPDGLKSYL 233

Query: 274 QTKLENRSLISSEIFTGKTEKKG------THRGTVEWAIAWCEENPEITSYCNTILTDEG 327
              + +                G         G         E +    SY N I T  G
Sbjct: 234 TDLIADAQEAVPIFSCENYISDGHNGDFSIGEGAAFALTWLEESSCANESYVNLIPTPLG 293

Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           GTHE+GL+ A+   +  +  L     R + + SDD+      +LS  + +P+F GQTK K
Sbjct: 294 GTHEAGLKQAVFNAVSNFINLHNLLPRGVKVQSDDVFGKTAFVLSARVLDPQFQGQTKDK 353

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L + DA + V     DP + +L QN     K+ E  I +++ R+R    +++ +K     
Sbjct: 354 LTNRDALKLVATVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSV--KKIEKKKGSGV 411

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKL DC        ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN      ++
Sbjct: 412 AVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +  N +I D+  A+G          D   LRY K+ I++DADVDG+HI  LLLT FY+  
Sbjct: 472 LFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531

Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614
             L+   H+++  PPLFR+    QG     +  YA D+     ILE  +K G  +    I
Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDGILERLQKEGVKETAYSI 591

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673
           SRFKGLGEM   QLK+T M  + R LL+V+I +  +   +T+D   KLMG  +A  R  +
Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETRDIFVKLMGKGEAAARRAW 649

Query: 674 IQERASFIDDVG 685
           ++      + + 
Sbjct: 650 MEREGDTAE-LD 660


>gi|300783223|ref|YP_003763514.1| DNA gyrase subunit B [Amycolatopsis mediterranei U32]
 gi|299792737|gb|ADJ43112.1| DNA gyrase subunit B [Amycolatopsis mediterranei U32]
          Length = 683

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 227/681 (33%), Positives = 336/681 (49%), Gaps = 42/681 (6%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +A   Y A  +  LEGLE VR RPGMYIG TD + ++HLFSEV+DN+ DE +AG+A  I 
Sbjct: 2   TAETLYGADDLTHLEGLEAVRKRPGMYIGSTDSRGINHLFSEVVDNSTDEGVAGHATKIV 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+L  +G + V D+GRGIP   H K    S +E++LT LHAGGKF  S Y+ SGGLHGVG
Sbjct: 62  VTLHADGSVQVDDDGRGIPTGTHAK-SGLSGVELVLTRLHAGGKFGGSGYKTSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR----------------NK 202
            S VNALS    VTV +   +    F  G+P +      K +                 +
Sbjct: 121 ASAVNALSHRFDVTVKQDGKVHQMSFKHGVPGTFDAPGPKAKFTRRSGLNLTGKMKRGER 180

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC---DKEIAEKYGIPE 259
            GT I +  D + F   A  D   +    ++ A+L   V         D    E +  P 
Sbjct: 181 SGTSIRYWYDARYFESGAALDVEGVRAKLRNTAFLVPGVTYVLRTAIEDTINEETFHFPH 240

Query: 260 ----KEEFYFPGGLKTYLQTKLENRSLISSEI---FTGKTEKKGTHRGTVEWAIAWCEEN 312
                 +F  P G K    T L        E      G  +        VE A+ W    
Sbjct: 241 GLVDMVDFLTPSGEKPVCGTLLITGEGTYKENAADAAGVMQSNVERHAEVEVAMRWGTGY 300

Query: 313 PEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ---NKRAISIISDDLMISAVG 368
                 + NTI    GGTH  G   A+T+ +++    T+     +      +D++     
Sbjct: 301 ERTVECFTNTIRNVHGGTHRRGFDRAVTKALQEAISKTRGLLKPKEDMPTLEDVLEGMTA 360

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL--VQNPIEATKLLEWVIERS 426
           ++ V + EP+F  QTK +L +    R ++  +      +    +   EA  +L+ V++ S
Sbjct: 361 VVHVRLPEPQFTSQTKDELSTAGITRVLQAIVDKHVKAWTEDRKTKSEAKVVLQKVVDAS 420

Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
             RL +++Q++   RKTA+    +P KL DC       +ELF+VEGDSA GSA+ AR   
Sbjct: 421 RVRLTQKQQKDAARRKTALEGAAMPPKLVDCRTTGVARSELFLVEGDSALGSARMARVSE 480

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545
            QA+LPLRGKILNV  A       N +I  +VQ LG  T   +    +RY +VI+M DAD
Sbjct: 481 YQALLPLRGKILNVQKASLGDTLKNAEIASIVQVLGAGTGRTFDLTTMRYGRVILMADAD 540

Query: 546 VDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR-ITQGT--KSVYAHDEEHKQKILE 602
           VDG+HI +LL+T F + M  +IE   L+   PPL + +T+G   ++ +   +   +    
Sbjct: 541 VDGSHIRTLLITLFAKYMRPVIEDGRLYAAMPPLHKLVTKGRNPETHFTFTQREMETKFA 600

Query: 603 EFKKHGKGKIE-ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
           E +K GK  +  + RFKGLGEM A +L ET M+   R++ R+ ++      +  + ++  
Sbjct: 601 ELEKAGKSIVTPVPRFKGLGEMDADELWETTMNPATRSVRRITMDD----AEAAEGALEL 656

Query: 662 LMGTKADERFKFIQERASFID 682
           LMG K + R  ++   +  +D
Sbjct: 657 LMGEKVEPRRNWLVASSDRVD 677


>gi|325972890|ref|YP_004249954.1| DNA gyrase subunit B [Mycoplasma suis str. Illinois]
 gi|323651492|gb|ADX97574.1| DNA gyrase, subunit B [Mycoplasma suis str. Illinois]
          Length = 655

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 232/660 (35%), Positives = 349/660 (52%), Gaps = 28/660 (4%)

Query: 29  IPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDE 88
             +     N + +  Y  SSI++LEGLE +R+RPGMYIG    + LHHL  E +DNA+DE
Sbjct: 2   STEEKKLINPTPNVEYGDSSIQVLEGLEAIRVRPGMYIGSLGVEGLHHLIWEALDNAVDE 61

Query: 89  VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148
             AGYA  I+++L+    ++V DNGRGIP+  +P+    S +  I T LHAGGKF+NS+Y
Sbjct: 62  ATAGYATEIKLTLEEEHIVSVEDNGRGIPIGINPQ-TGLSNIVTIFTHLHAGGKFNNSSY 120

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE--KKEKVRNKRGTR 206
           + SGGLHGVGI  VNALS  L V V R+      KF+ G  L        E V +K GT+
Sbjct: 121 KTSGGLHGVGIKCVNALSTFLEVNVCREGKEVFTKFTEGGKLESQPSVISESVGSKTGTK 180

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I ++PD  +      +D   + +  Q+ +YL+  +   +       E     E E+F   
Sbjct: 181 IRWQPDFSVLER-NDYDIGLIKERLQNLSYLNKNLSFIF-------ENKNTGEVEQFLSS 232

Query: 267 GGLKTYLQTKLENRSLISS-------EIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYC 319
            GL  ++++  +    +         E    K E   + R  V +  +   ++P I S+C
Sbjct: 233 QGLADWVESINQGFETVHPIQNIVIEEQQVKKKETVNSLRCEVSFQYSLERDHPVIYSFC 292

Query: 320 NTILTDEGGTHESGLRVALTRGIKKY-AELTQNKRAISIISDDLMISAVGILSVFIREPE 378
           N I T  GG H   ++  +   +++Y  +          I +D++     ++SV+  +P 
Sbjct: 293 NNIKTSLGGVHLETVKEGILSCVRQYAEDWKIIDDKYKWIKEDVISGISLVVSVYYTDPS 352

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER-LRRRKQRE 437
           + GQTK  L+S + +  +   +          N   A  +L  + +   +R  R +    
Sbjct: 353 YKGQTKETLISNEIRPILREQIEGKLHTSFQDNIEVAKLILGHIQQEYRKRINREQMLEM 412

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
             +      L    KLADC+      +EL+IVEGDSAGGSAK ARNR  QA+LP++GK+ 
Sbjct: 413 SKKIHKENLLGFAEKLADCTIKNPEFSELYIVEGDSAGGSAKGARNREFQAILPIKGKLA 472

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557
           N AS    KI +N+++ +L+ A+GC     +    LRY K+I+MTDADVDG+HI  L++ 
Sbjct: 473 N-ASKKKNKIFDNEEVKNLITAIGCSYGHNFDISKLRYNKIILMTDADVDGSHIQVLIMN 531

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
           FFY+ M  L+E  H+++   PL++ +   +++Y  DEE K++     K +     E SRF
Sbjct: 532 FFYKYMKPLLENGHVYIARSPLYKASSKKETIYLLDEEEKREFE---KNNKSSSYEFSRF 588

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           KGLGEM  +QL ET MD  +RT L+V+I  D      TQ ++ KLMG K   R  FI E 
Sbjct: 589 KGLGEMSPAQLWETTMDPKRRTFLQVQIIDDPK----TQATMEKLMGAKVKPRKIFITEN 644


>gi|33592391|ref|NP_880035.1| DNA topoisomerase IV subunit B [Bordetella pertussis Tohama I]
 gi|33572036|emb|CAE41560.1| topoisomerase IV subunit B [Bordetella pertussis Tohama I]
          Length = 653

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 249/668 (37%), Positives = 353/668 (52%), Gaps = 39/668 (5%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A+  Y  +SIR+L+GLEPVR RPGMY   T  +   H+  EVIDNA DE +AGY   I+V
Sbjct: 2   ATPRYTEASIRVLKGLEPVRQRPGMY---TRTENPLHIVQEVIDNAADEALAGYGKQIQV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLHG 156
           +L G+G ++V D+GRGIPV  HP+  N   +E++ T LHAGGKFD      Y  SGGLHG
Sbjct: 59  TLHGDGSISVEDDGRGIPVGLHPE-ENAPVVELVFTRLHAGGKFDKQGGGAYAFSGGLHG 117

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK-EKVRNKRGTRITFRPDPKI 215
           VG+SV NAL+  L V V R   +    F+ G  +  L    E  R K GTR+   PD K 
Sbjct: 118 VGVSVTNALATRLEVVVWRDGAVHRLVFAGGDVIEALAPYPEGGRKKSGTRVRVWPDAKY 177

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F        A L  + +SKA L   VK     +K         +   + +  GL+ YL  
Sbjct: 178 FDS-PAIPMAELTHLLRSKAVLLPGVKVSLVNEK-------TGDTRTWQYQEGLRGYLAE 229

Query: 276 KLENRSLISS----EIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTH 330
            L    L+      + + G            +W +AW E+      SY N I T  GGTH
Sbjct: 230 ALAGAELMIPFFEGQQYAGADHDSFAEGEGAQWVVAWAEDGNVVRESYVNLIPTPAGGTH 289

Query: 331 ESGLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           ESGLR  L   +K +AE  +   + + ++ +D+   A  +LS  + +P+F GQ K +L S
Sbjct: 290 ESGLREGLFGAVKGFAELHSLLPKGVKLLPEDVFTRASFVLSAKVLDPQFQGQIKERLNS 349

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
            DA R V    +   D +L  N     KL E  I +++ R R    ++V ++ +     L
Sbjct: 350 RDAVRLVGCFAKSALDLWLHSNVEYGKKLAELAIRQAQARQR--SAQKVEKRKSSGVAVL 407

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKL DC  + A  TE+F+VEGDSAGGSAK  R++  QA+LPLRGK+LN      +++  
Sbjct: 408 PGKLTDCESSDASRTEVFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNSWEVDRDRLFA 467

Query: 510 NQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           N +I D+  A+G        E D   LRY ++ I++DADVDG+HI  LLLT FY+    L
Sbjct: 468 NNEIHDISVAIGVDPHGPGDEPDLSGLRYGRICILSDADVDGSHIQVLLLTLFYRHFPKL 527

Query: 567 IEQKHLFLISPPLFRIT---QGT---KSVYAHDEEHKQKILEEFKKHG--KGKIEISRFK 618
           IE  ++F+  PPLFR+    QG    + +Y  D    +   ++ +K G  +    +SRFK
Sbjct: 528 IEAGNVFVARPPLFRVDVPAQGKRPARKIYCLDAGELEAAQDKLRKEGVRESAWSVSRFK 587

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQER 677
           GLGEM   QL ET M+ + R LL V       +  DT    + LMG  ++ +R  +I+E+
Sbjct: 588 GLGEMNPEQLWETTMNPDTRRLLPVGYGD--LTPGDTTRMFDMLMGKGESSQRRAWIEEK 645

Query: 678 ASFIDDVG 685
            +  + + 
Sbjct: 646 GNLAE-LD 652


>gi|312797004|ref|YP_004029926.1| Topoisomerase IV subunit B [Burkholderia rhizoxinica HKI 454]
 gi|312168779|emb|CBW75782.1| Topoisomerase IV subunit B (EC 5.99.1.-) [Burkholderia rhizoxinica
           HKI 454]
          Length = 680

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 246/674 (36%), Positives = 359/674 (53%), Gaps = 43/674 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            A + +   Y  +SI++L+GLEPV+ RPGMY   T  +   H+  EVIDNA DE + G+ 
Sbjct: 19  MATKKSGPAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIVQEVIDNASDEALGGFG 75

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151
             I V+L  +G ++V D+GRGIP   HP+      +EI+ T LHAGGKFD      Y  S
Sbjct: 76  TQIIVTLHTDGSVSVEDDGRGIPFGLHPE-EGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 134

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK---KEKVRNKRGTRIT 208
           GGLHGVG+SV NALS  L VTV R   +    FS G  +  L       +V  K GTR+T
Sbjct: 135 GGLHGVGVSVTNALSQRLDVTVWRDGKVADIGFSHGDVVRALTVRAANGRVDKKSGTRVT 194

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
             PDPK F        + L ++ +SKA L   V+     +K         E++ + +  G
Sbjct: 195 AWPDPKYFDSAN-LPQSELQRLLRSKAVLLPGVEVVLITEK-------TGERQSWKYKDG 246

Query: 269 LKTYLQTKLENRSLISSEIFTGK-------TEKKGTHRGTVEWAIAWCEENP-EITSYCN 320
           L+ YL   L     +       +       T+          W +AW EE P    SY N
Sbjct: 247 LRGYLLEGLAGYDTLIPLFEGERYAGSSRTTDDTFAEGEGASWVVAWSEEGPLLRESYVN 306

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEF 379
            I T  GGTHESGLR  L + +K + EL     + + ++++D+      +LS  + +P+F
Sbjct: 307 LIPTPAGGTHESGLRDGLFQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQF 366

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN 439
            GQ K +L S DA R V + +R   + +L Q+     KL E VI++++ R R  ++ E  
Sbjct: 367 QGQIKERLNSRDAVRLVSSFVRPSLELWLNQHVEHGRKLAELVIKQAQARTRAGQKVEKR 426

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           + + +  L  PGKL DC        ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN 
Sbjct: 427 KSSGVAVL--PGKLVDCESTDVARNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNT 484

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLL 556
                +++  N ++ D+  A+G    +        +LRY K+ I++DADVDG+HI  LLL
Sbjct: 485 WETERDRLFANNEVHDIAVAIGVDPHASDDAIDLSNLRYGKICILSDADVDGSHIQVLLL 544

Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG-- 608
           T F++    LIE+ H+++  PPLFR+    +G K    +YA DE   + IL++ +K G  
Sbjct: 545 TLFFRHFPQLIERGHVYVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDGVR 604

Query: 609 KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KA 667
           +    ISRFKGLGEM A QL +T M+ + R L+ V++         T   +  LMG  +A
Sbjct: 605 ESAWTISRFKGLGEMNAEQLWDTTMNPDTRRLMPVQL--GGLDFDATIGRMTMLMGKGEA 662

Query: 668 DERFKFIQERASFI 681
             R  +++E+ +  
Sbjct: 663 AARRAWLEEKGNEA 676


>gi|261392093|emb|CAX49590.1| topoisomerase IV subunit B [Neisseria meningitidis 8013]
          Length = 661

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 243/672 (36%), Positives = 353/672 (52%), Gaps = 38/672 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ Y  SSI +L+GLEPV+ RPGMY   T   +  H+  EVIDNA DE + G+A  I+
Sbjct: 2   AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATAID 58

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154
           V +  +G L+V DNGRGIPV  HP+      +E++ T LHAGGKF+       Y  SGGL
Sbjct: 59  VQIHEDGSLSVRDNGRGIPVGLHPE-EGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213
           HGVG+SV NALS  L VTV R+  I    F+ G  + PL +  K      GT +   PD 
Sbjct: 118 HGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRVWPDG 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     +    L ++ ++KA L   V+   +      +       + +++P GLK+YL
Sbjct: 178 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEAHTQTWHYPDGLKSYL 233

Query: 274 QTKLENRS-----LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEG 327
              + +              + +     +      +A+ W EE      SY N I T  G
Sbjct: 234 TDLIADAQEAVPLFSCENYISDEHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293

Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           GTHE+GL+ A+   +  +  L     R + + SDD+      +LS  + +P+F GQTK K
Sbjct: 294 GTHEAGLKQAVFNAVSNFINLHNLLPRGVKVQSDDVFGKTAFVLSARVLDPQFQGQTKDK 353

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L + DA + V     DP + +L QN     K+ E  I +++ R+R    +++ +K     
Sbjct: 354 LTNRDALKLVATVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSV--KKIEKKKGSGV 411

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKL DC        ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN      ++
Sbjct: 412 AVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +  N +I D+  A+G          D   LRY K+ I++DADVDG+HI  LLLT FY+  
Sbjct: 472 LFGNAEIHDISVAIGVDPHGINDNPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531

Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614
             L+   H+++  PPLFR+    QG     +  YA D+     ILE  +K G  +    I
Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDSILERLQKEGVKETAYSI 591

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673
           SRFKGLGEM   QLK+T M  + R LL+V+I +  +   +T+D   KLMG  +A  R  +
Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETRDIFVKLMGKGEAAARRAW 649

Query: 674 IQERASFIDDVG 685
           ++      + + 
Sbjct: 650 MEREGDTAE-LD 660


>gi|262392780|ref|YP_003284634.1| DNA gyrase subunit B [Vibrio sp. Ex25]
 gi|262336374|gb|ACY50169.1| DNA gyrase subunit B [Vibrio sp. Ex25]
          Length = 805

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 230/566 (40%), Positives = 349/566 (61%), Gaps = 17/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I V
Sbjct: 2   SENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP E H +  N S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDNSVSVSDDGRGIPTEIHSE-ENVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+++ +T+ R   I +Q +  G P +PL       +K GT+I F P  + F + 
Sbjct: 121 SVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQIRFWPSAETFSNT 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V      ++E        + + F + GG++ ++     N
Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KHDHFMYEGGIQAFVDHLNTN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  +IF   +E++     +VE A+ W +     I  + N I   +GGTH +G R AL
Sbjct: 233 KTPIIEKIFHFNSERED--GISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAAL 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+A+ +    +L++NP EA  +   +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 351 ESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  DEE   + 
Sbjct: 531 AQPPLYKVKKGKQEQYIKDEEAMNQY 556



 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G ++          + L+   K     +   R+KGLGEM   QL ET MD   R ++
Sbjct: 708 IKRGERT---MPVASFAEALDWLVKESMRGLSRQRYKGLGEMNPDQLWETTMDPETRRMM 764

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R  FI+E A  + ++ 
Sbjct: 765 QVTIEDAVG----ADQLFTTLMGDQVEPRRNFIEENALKVANLD 804


>gi|298369978|ref|ZP_06981294.1| DNA topoisomerase IV, B subunit [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298281438|gb|EFI22927.1| DNA topoisomerase IV, B subunit [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 661

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 244/672 (36%), Positives = 351/672 (52%), Gaps = 38/672 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ Y  SSI +L+GLEPV+ RPGMY   T   +  H+  EVIDNA DE + G+A  I+
Sbjct: 2   TKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATEID 58

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154
           V +  +G L+V DNGRGIPV  HP       +E++ T LHAGGKF+       Y  SGGL
Sbjct: 59  VRIHNDGSLSVHDNGRGIPVGLHP-VEGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213
           HGVG+SV NALS  L VTV R+  I    F+ G  + PL +  K      GT +   PD 
Sbjct: 118 HGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAEVGKCAVKDSGTEVRVWPDG 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     +    L ++ ++KA L   V+   +      +       + +++P GLK+YL
Sbjct: 178 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEAHTQTWHYPDGLKSYL 233

Query: 274 QTKLENRS-----LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEG 327
              + +              +       +      +A+ W EE      SY N I T  G
Sbjct: 234 TDLIADAQEAVPLFSCENYISDDHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293

Query: 328 GTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           GTHE+GL+ A+   +  +  L     R + + SDD+      +LS  + +P+F GQTK K
Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRGVKVQSDDVFSKTAFVLSARVLDPQFQGQTKDK 353

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L + DA + V     DP + +L QN     K+ E  I +++ R+R    +++ +K     
Sbjct: 354 LTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSV--KKIEKKKGSGV 411

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKL DC        ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN      ++
Sbjct: 412 AVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDL---RYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +  N +I D+  A+G          DL   RY K+ I++DADVDG+HI  LLLT FY+  
Sbjct: 472 LFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531

Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614
             L+   H+++  PPLFR+    QG     +  YA D+     ILE  +K G  +    I
Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDSILERLQKEGVKETAYSI 591

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673
           SRFKGLGEM   QLK+T M  + R LL+V+I K  +   +T+D   KLMG  +A  R  +
Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPKGADD--ETRDIFVKLMGKGEAAARRAW 649

Query: 674 IQERASFIDDVG 685
           ++      + + 
Sbjct: 650 MEREGDTAE-LD 660


>gi|284007066|emb|CBA72341.1| DNA gyrase subunit B [Arsenophonus nasoniae]
          Length = 805

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 228/579 (39%), Positives = 347/579 (59%), Gaps = 18/579 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+ YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY   I V
Sbjct: 3   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCTDIIV 62

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V+DNGRGIP + H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 63  TIHTDNSISVLDNGRGIPTDIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 121

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L + + R+  I  Q +  G+P +PL    +    RGT I F P  + F   
Sbjct: 122 SVVNALSEKLSLVIRREGKIHEQTYQLGVPQAPLTIAGETEE-RGTYIRFWPSLETFKTV 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  +       ++  E       + F++ GG+K +++    N
Sbjct: 181 TEFEYDILAKRLRELSFLNSGISIRLFDKRDNKE-------DHFHYEGGIKAFVEYLSRN 233

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   +F    EK+G     VE ++ W +     +  + N I   +GGTH  G R A+
Sbjct: 234 KTPIHPSVFYFSAEKEGI---NVEISMQWNDGFQENVYCFTNNIPQRDGGTHLVGFRTAM 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNSYMDKEGYQKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTVV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 351 ETLMNEKLVEYLLENPNDAKIVVSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQERDPSLSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+++
Sbjct: 471 LITALGCGIGRDEYDPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613
             PPL+++ +G +  Y  D+E   + L            
Sbjct: 531 AQPPLYKVKKGKQEQYIKDDEAMNEYLISIALDNAALYT 569



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            +  L    K  +  + + R+KGLGEM   QL ET M+ + R ++RV +   +     T 
Sbjct: 720 FEDALNWLSKESRRGLMVQRYKGLGEMNPEQLWETTMNPDTRHMMRVTVKDAI----ATD 775

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A   +++ 
Sbjct: 776 QLFTTLMGDAVEPRRAFIEENALKAENID 804


>gi|330431465|gb|AEC16524.1| DNA gyrase subunit B [Gallibacterium anatis UMN179]
          Length = 806

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 237/578 (41%), Positives = 354/578 (61%), Gaps = 19/578 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           +   S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY  
Sbjct: 2   SNQTSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCK 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V D+GRGIPV  H +    S  E+I+T LHAGGKFD+++Y++SGGLH
Sbjct: 62  DIIVTIHEDNSVSVQDDGRGIPVGIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD+L +T+ R+  +  Q +  G P +PL    +  +K GT + F P P I
Sbjct: 121 GVGVSVVNALSDKLQLTIRREGHVHEQFYRLGEPQAPLAVIGE-SDKTGTTVRFWPSPSI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F D   F    L K  +  ++L+  V       +           + F++ GG++ +++ 
Sbjct: 180 FSDT-EFQYEVLSKRLRELSFLNSGVSIRLIDLR-------TNRSDHFHYEGGIQAFVEY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
             +N++ I S+ F   TEK G     VE A+ W +   E    + N I   +GGTH +G 
Sbjct: 232 LNKNKNPIHSKPFYLNTEKDGI---GVEVALQWNDGFQENLYCFTNNIPQRDGGTHLAGF 288

Query: 335 RVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R A+TR +  Y E      K  +++  DD     V I+SV + +P+F+ QTK KLVS + 
Sbjct: 289 RAAMTRTLNNYMEKEGYNKKSKVAMAGDDAREGLVAIVSVKVPDPKFSSQTKDKLVSSEV 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451
           +  VE+A+ +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPG
Sbjct: 349 KSVVESAVGERLQEYLLENPNDAKIIVGKIIDAARAREAARKAREMTRRKGALDLGGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +++ ++Q
Sbjct: 409 KLADCQERDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDRMLSSQ 468

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ 
Sbjct: 469 EVAALITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           H+++  PPL+++ +G +  Y  D++   +        G
Sbjct: 529 HVYIAQPPLYKVKKGKQEQYIKDDDAMTQYELAIALDG 566



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 20/147 (13%)

Query: 542 TDADVDGAHIAS---LLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQ 598
           TD  +D   I      LL     ++ +L+E+   +        +T+G + +   +    +
Sbjct: 676 TDHALDFHFIEGSEYALLLKLGHQLRNLLEEG-AY--------VTRGERRL---NVSSFE 723

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           + ++   K  +  + + R+KGLGEM   QL ET MD   R +L+V I   +         
Sbjct: 724 QAIDWLVKESRRGLSVQRYKGLGEMNPEQLWETTMDPEARRMLKVSIRDAV----AADQI 779

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
              LMG + + R  FI+  A    ++ 
Sbjct: 780 FTTLMGDEVEPRRDFIETNALHA-NLD 805


>gi|91228345|ref|ZP_01262273.1| DNA gyrase subunit B [Vibrio alginolyticus 12G01]
 gi|269965275|ref|ZP_06179396.1| DNA gyrase, subunit B [Vibrio alginolyticus 40B]
 gi|91188105|gb|EAS74409.1| DNA gyrase subunit B [Vibrio alginolyticus 12G01]
 gi|269830076|gb|EEZ84304.1| DNA gyrase, subunit B [Vibrio alginolyticus 40B]
          Length = 805

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 230/566 (40%), Positives = 349/566 (61%), Gaps = 17/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I V
Sbjct: 2   SENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP E H +  N S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDNSVSVSDDGRGIPTEIHSE-ENVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+++ +T+ R   I +Q +  G P +PL       +K GT+I F P  + F + 
Sbjct: 121 SVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQIRFWPSAETFSNT 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V      ++E        + + F + GG++ ++     N
Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KHDHFMYEGGIQAFVDHLNTN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  +IF   +E++     +VE A+ W +     I  + N I   +GGTH +G R AL
Sbjct: 233 KTPIIEKIFHFNSERED--GISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAAL 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+A+ +    +L++NP EA  +   +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 351 ESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  DEE   + 
Sbjct: 531 AQPPLYKVKKGKQEQYIKDEEAMNQY 556



 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G ++       +  + L+   K     +   R+KGLGEM   QL ET MD   R ++
Sbjct: 708 IKRGERT---MPVANFAEALDWLVKESMRGLSRQRYKGLGEMNPDQLWETTMDPETRRMM 764

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R  FI+E A  + ++ 
Sbjct: 765 QVTIEDAVG----ADQLFTTLMGDQVEPRRNFIEENALKVANLD 804


>gi|269799050|gb|ACZ43803.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 726

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 229/578 (39%), Positives = 352/578 (60%), Gaps = 18/578 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
           + +NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   + 
Sbjct: 2   SENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCTDVV 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +G ++V D+GRGIPV+ H +    S  E+ILT LHAGGKFD+++Y++SGGLHGVG
Sbjct: 62  VTIHEDGSVSVSDDGRGIPVDIHEE-EGVSAAEVILTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS++L +T+ R   I  Q +  G P +P+     + +  GT + F P  + F +
Sbjct: 121 VSVVNALSEKLELTIHRHGHIHQQIYRHGEPQAPIAVIGDI-DTTGTELRFWPSHETFTN 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++E        + + F + GG+K ++     
Sbjct: 180 TL-FHYDILAKRLRELSFLNSGVSIKLIDERED------GKSDHFVYEGGIKAFVDYLNV 232

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ I+ + F    E++     TVE A+ W +     I  + N I   +GGTH +G R A
Sbjct: 233 NKTPINKDAFHFSVERED--GITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGA 290

Query: 338 LTRGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           LTR +  Y E     +  ++ +   DD       ++SV + +P+F+ QTK KLVS + + 
Sbjct: 291 LTRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKS 350

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE A+ +    YL++NP EA+ ++  +I+ S  R   RK R    RK A+    LPGKL
Sbjct: 351 AVEQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKAREMTRRKGALDLAGLPGKL 410

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 411 ADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 470

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ A+GC   R +Y  +  RY ++IIMTDADVDG+HI +LLLTFF+++M +LIE+ ++
Sbjct: 471 ATLITAMGCGIGRDEYNPDKTRYHQIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYI 530

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           ++  PPL+++ +G +  Y  D+    + L      G G
Sbjct: 531 YIAQPPLYKMKKGKQERYIKDDADLTQYLTTIALDGAG 568


>gi|300311161|ref|YP_003775253.1| DNA topoisomerase IV subunit B [Herbaspirillum seropedicae SmR1]
 gi|300073946|gb|ADJ63345.1| DNA topoisomerase IV subunit B protein [Herbaspirillum seropedicae
           SmR1]
          Length = 662

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 249/674 (36%), Positives = 368/674 (54%), Gaps = 42/674 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              +++  +Y  SSIR+L+GLEPV+ RPGMY   T  +   H+  EVIDNA DE + GY 
Sbjct: 2   ATKKTSPSDYSESSIRVLKGLEPVKQRPGMY---TRTENPLHILQEVIDNASDEALGGYG 58

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST---YEIS 151
             I V+++ +G ++V D+GRGIPV  HP+     T+EI+ T LHAGGKFD  +   Y  S
Sbjct: 59  KSIIVTMNADGSVSVEDDGRGIPVGLHPE-EKVPTVEIVFTRLHAGGKFDKGSGGAYAFS 117

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR--GTRITF 209
           GGLHGVG+SV NAL+  L +TV R+  + +  FS G  +  L+ +   R+ +  GTR+T 
Sbjct: 118 GGLHGVGVSVTNALATRLEITVWREGGVHTLAFSGGDVIEKLKSRPATRDDKKSGTRVTV 177

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD K F          L ++ +SKA L   VK   +  K         + + + +  GL
Sbjct: 178 WPDAKYFDS-PTIPMGELQRLLRSKAVLLPGVKVTLTNGK-------TGDSQSWQYDQGL 229

Query: 270 KTYLQTKLENRSLISSEIFTGKTEK------KGTHRGT-VEWAIAWCEENP-EITSYCNT 321
           + YL  +L       + I   + E+       G   G    W +AW EE      SY N 
Sbjct: 230 RGYLMEQLAQTGSGETLIPLFEGEQFAGKDADGFAEGEGASWVVAWTEEGAVVRESYVNL 289

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFA 380
           I T  GGTHESGLR  L   +K +AE+     + + ++++D+      +LS  + +P+F 
Sbjct: 290 IPTSNGGTHESGLREGLFSAVKSFAEMHSLLPKGVKLLAEDVFARVSFVLSAKVLDPQFQ 349

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQ K +L S DA R V    R   + +L Q+     KL E VI++++ RLR  ++ E  +
Sbjct: 350 GQIKERLNSRDAVRLVAGFSRPALELWLNQHVDYGKKLAELVIKQAQSRLRSAQKVEKKK 409

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
            + +  L  PGKL DC  +     ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN  
Sbjct: 410 SSGVAVL--PGKLTDCESSDVSRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNAW 467

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLT 557
               +++  N +I D+  A+G          D   LRY K+ I++DADVDG+HI  LLLT
Sbjct: 468 ETERDRLFANNEIHDIAVAIGVDPHGINDTPDLSGLRYGKICILSDADVDGSHIQVLLLT 527

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--K 609
            F++    LIE  ++ +  PPL+R+    +G K    +YA D+   + I ++ +K G  +
Sbjct: 528 LFFRHFPKLIENGNICVARPPLYRVDAPARGKKPVQKLYALDDGELEAIEDKLRKDGLKE 587

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KAD 668
           G   ISRFKGLGEM A QL ET M+ + R LL +   +    ++ +++  N LMG  +A 
Sbjct: 588 GAWSISRFKGLGEMNAEQLWETTMNPDTRRLLPISFGEPG--VQTSEERFNMLMGKGEAA 645

Query: 669 ERFKFIQERASFID 682
            R  +I+E  +  +
Sbjct: 646 SRRAWIEEHGNEAE 659


>gi|254360771|ref|ZP_04976919.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mannheimia
           haemolytica PHL213]
 gi|261492363|ref|ZP_05988924.1| DNA gyrase subunit B [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|153091341|gb|EDN73315.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mannheimia
           haemolytica PHL213]
 gi|261311967|gb|EEY13109.1| DNA gyrase subunit B [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 810

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 234/586 (39%), Positives = 349/586 (59%), Gaps = 20/586 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
            + Q+ + +YD+SSI++L GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+
Sbjct: 1   MSEQTQATSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 60

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
              I V++  +  ++V D+GRGIPV  HP+    S  E+I+T LHAGGKFD+++Y++SGG
Sbjct: 61  CKDIIVTIHSDNSVSVQDDGRGIPVGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGG 119

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS +L +T+ R+  +  Q +S G P +PL          GT + F P  
Sbjct: 120 LHGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGEPDAPLAIIGNTEK-TGTSVRFWPSL 178

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF +K  F+   L K  +  ++L+  V      +++  E       E F + GG+K Y+
Sbjct: 179 DIFKNKTEFEYKILSKRLRELSFLNSGVSIKLIDERDGKE-------EHFKYEGGIKAYV 231

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   E ++ I +  F   TEK G     VE ++ W +     +  + N I   +GGTH +
Sbjct: 232 EYLNEGKTHIHNTPFYLTTEKDGI---GVEISLQWNDSYNENVYCFTNNIPQRDGGTHLA 288

Query: 333 GLRVALTRGIKKYAELTQNKR----AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           G R ALTR +K Y + +   +     I    DD     V ++SV + +P+F+ QTK KLV
Sbjct: 289 GFRGALTRALKNYMDNSGVLKKADANIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLV 348

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447
           S + +  VE+++ +    YL +NP +A  ++  +I+ +  R   RK R    RK A+   
Sbjct: 349 SSEVRGAVESSMNEALSDYLAENPDDAKNIVTKIIDAARAREAARKAREMTRRKGALDLG 408

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +EL++VEGDSAGGSAKQ R+R NQA+LPL+GKILNV  A  +K+
Sbjct: 409 GLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKM 468

Query: 508 RNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
            ++Q++  L+ ALG          E LRY K+IIMTDADVDGAHI +LLLTFFY++M +L
Sbjct: 469 LSSQEVATLITALGTGIGRDDYNLEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPEL 528

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612
           IE  ++++  PPL+++ +G +  Y  D +   +   +    G G  
Sbjct: 529 IENGYIYIAQPPLYKVKKGKQERYIQDNDEMSQYEIDIALEGAGLY 574



 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 5/89 (5%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
             + L+   K  +  + I R+KGLGEM   QL ET MD   R +L+V I   +       
Sbjct: 726 FAEALDWLVKESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNITDAI----AAD 781

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
              + LMG + + R  FI+  A +   + 
Sbjct: 782 KLFSTLMGDEVEPRRDFIETNALYA-QLD 809


>gi|269799052|gb|ACZ43804.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 700

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 229/578 (39%), Positives = 352/578 (60%), Gaps = 18/578 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
           + +NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   + 
Sbjct: 2   SENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCTDVV 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +G ++V D+GRGIPV+ H +    S  E+ILT LHAGGKFD+++Y++SGGLHGVG
Sbjct: 62  VTIHEDGSVSVSDDGRGIPVDIHEE-EGVSAAEVILTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS++L +T+ R   I  Q +  G P +P+     + +  GT + F P  + F +
Sbjct: 121 VSVVNALSEKLELTIHRHGHIHQQIYRHGEPQAPIAVIGDI-DTTGTELRFWPSHETFTN 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++E        + + F + GG+K ++     
Sbjct: 180 TL-FHYDILAKRLRELSFLNSGVSIKLIDERED------GKSDHFVYEGGIKAFVDYLNV 232

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ I+ + F    E++     TVE A+ W +     I  + N I   +GGTH +G R A
Sbjct: 233 NKTPINKDAFHFSVERED--GITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGA 290

Query: 338 LTRGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           LTR +  Y E     +  ++ +   DD       ++SV + +P+F+ QTK KLVS + + 
Sbjct: 291 LTRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKS 350

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE A+ +    YL++NP EA+ ++  +I+ S  R   RK R    RK A+    LPGKL
Sbjct: 351 AVEQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKAREMTRRKGALDLAGLPGKL 410

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 411 ADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 470

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ A+GC   R +Y  +  RY ++IIMTDADVDG+HI +LLLTFF+++M +LIE+ ++
Sbjct: 471 ATLITAMGCGIGRDEYNPDKTRYHQIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYI 530

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           ++  PPL+++ +G +  Y  D+    + L      G G
Sbjct: 531 YIAQPPLYKMKKGKQERYIKDDADLTQYLTTIALDGAG 568


>gi|325519490|gb|EGC98871.1| DNA topoisomerase IV subunit B [Burkholderia sp. TJI49]
          Length = 660

 Score =  517 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 239/673 (35%), Positives = 359/673 (53%), Gaps = 41/673 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +  S  Y  +SI++L+GLEPV+ RPGMY   T  +   H+  EVIDNA DE + GY 
Sbjct: 1   MSTKKPSAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYG 57

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151
             I V+L  +  ++V D+GRGIP   HP+      +EI+ T LHAGGKFD      Y  S
Sbjct: 58  RQITVTLHADQSVSVEDDGRGIPFGMHPE-EGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--LEKKEKVRNKRGTRITF 209
           GGLHGVG+SV NAL+  L VTV R   I    F+ G  + P   +   +   K GTR+  
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKIAELGFADGDVVKPLSTQSAGRGEKKSGTRVQV 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P+PK F          L ++ +SKA L   V+     +K         E++ + +  GL
Sbjct: 177 WPNPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVVLVNEKS-------GERQSWKYEDGL 228

Query: 270 KTYLQTKLENRSLISSEI------FTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTI 322
           + YL  ++    L+           +   +          W +AW EE      SY N I
Sbjct: 229 RGYLLDEMNGSELLIPLFEGERFADSRSGDDTFAEGEGASWVVAWSEEGSLVRESYVNLI 288

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAG 381
            T  GGTHESGLR  L + +K + EL     + + ++++D+      +LS  + +P+F G
Sbjct: 289 PTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQG 348

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           Q K +L S DA + V +  R   + +L Q+     KL E VI++++ R R  ++ E  + 
Sbjct: 349 QIKERLNSRDAVKLVSSFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKVEKRKS 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +  L  PGKL DC        ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN   
Sbjct: 409 SGVAVL--PGKLTDCETEDTARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWE 466

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLLTF 558
              +++  N ++ D+  A+G    S        +LRY K+ I++DADVDG+HI  LLLT 
Sbjct: 467 TERDRLFANNEVHDISVAIGVDPHSPDDGVDLSNLRYGKICILSDADVDGSHIQVLLLTL 526

Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KG 610
           F++    LIE+ H+++  PPLFR+    +G K    +YA D+   + IL++ +K G    
Sbjct: 527 FFKHFPQLIERGHVYVARPPLFRVDAPARGKKPAQKLYALDDGELEAILDKLRKDGVRDT 586

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669
           +  ISRFKGLGEM A QL +T M+ + R L+ V++       + T + +  LMG  +A  
Sbjct: 587 QWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKL--GELDYEATVERMTMLMGKGEAAA 644

Query: 670 RFKFIQERASFID 682
           R  +++E+ + ++
Sbjct: 645 RRGWLEEKGNDVE 657


>gi|311105320|ref|YP_003978173.1| DNA topoisomerase 4 subunit B [Achromobacter xylosoxidans A8]
 gi|310760009|gb|ADP15458.1| DNA topoisomerase 4 subunit B [Achromobacter xylosoxidans A8]
          Length = 653

 Score =  517 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 249/670 (37%), Positives = 356/670 (53%), Gaps = 43/670 (6%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A+  Y  +SIR+L+GLEPVR RPGMY   T  +   H+  EVIDNA DE +AGY   I+V
Sbjct: 2   ATPRYTEASIRVLKGLEPVRQRPGMY---TRTENPLHVVQEVIDNAADEALAGYGKQIQV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLHG 156
           +L  +G ++V D+GRGIPV  HP+  +   +E++ T LHAGGKFD      Y  SGGLHG
Sbjct: 59  TLHIDGSVSVEDDGRGIPVGLHPE-EHAPVVELVFTRLHAGGKFDKAGGGAYAFSGGLHG 117

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG---IPLSPLEKKEKVRNKRGTRITFRPDP 213
           VG+SV NAL+  L V V R   +    F  G    PL+P ++    R K GTR+   PD 
Sbjct: 118 VGVSVTNALATRLEVVVWRDGAVNRLVFKGGDVAEPLAPYDQGG--RKKSGTRVRVWPDA 175

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F          L  + +SKA L   VK     +K    K        + +  GL+ YL
Sbjct: 176 KYFDSPN-IPLGELTHLLRSKAVLLPGVKVSLVNEKTGDTKT-------WQYQDGLRGYL 227

Query: 274 QTKLENRSLISS----EIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGG 328
              L    L+      E + G   +        +W +AW E+      SY N I T  GG
Sbjct: 228 SEALAGAELMVPFFEGEQYAGADHENFAEGEGAQWVVAWTEDGNAVRESYVNLIPTPAGG 287

Query: 329 THESGLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           THESGLR  L   +K +AE  +   + + ++ +D+   A  +LS  + +P+F GQ K +L
Sbjct: 288 THESGLREGLFSAVKGFAELHSLLPKGVKLLPEDVFARASFVLSAKVLDPQFQGQIKERL 347

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL 447
            S DA R V    +   D +L  N     KL E  I +++ R R    ++V ++ +    
Sbjct: 348 NSRDAVRLVGGFSKSALDLWLHSNVEYGKKLAELAIRQAQARQR--SAQKVEKRKSSGVA 405

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKL DC  + A  TE+F+VEGDSAGGSAK  R++  QA+LPLRGK+LN      +++
Sbjct: 406 VLPGKLTDCESSDATRTEVFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNSWEVDRDRL 465

Query: 508 RNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
             N +I D+  A+G          D   LRY ++ I++DADVDG+HI  LLLT FY+   
Sbjct: 466 FANNEIHDISVAIGVDPHGPGDTPDLSGLRYGRICILSDADVDGSHIQVLLLTLFYKHFP 525

Query: 565 DLIEQKHLFLISPPLFRIT---QGT---KSVYAHDEEHKQKILEEFKKHG--KGKIEISR 616
            L+E  ++F+  PPLFR+    QG    + +Y  DE   +   ++ +K G  +G   +SR
Sbjct: 526 KLVEAGNVFVAKPPLFRLDVPAQGKRPARKIYCLDEGELEAAQDKLRKEGVREGAWAVSR 585

Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQ 675
           FKGLGEM   QL ET M+ + R LL V       + +DT    + LMG  ++ +R  +I+
Sbjct: 586 FKGLGEMNPEQLWETTMNPDTRRLLPVGYGD--LTPEDTTRMFDMLMGKGESSQRRAWIE 643

Query: 676 ERASFIDDVG 685
           E+ +  + + 
Sbjct: 644 EKGNLAE-LD 652


>gi|323496930|ref|ZP_08101958.1| DNA gyrase subunit B [Vibrio sinaloensis DSM 21326]
 gi|323318004|gb|EGA70987.1| DNA gyrase subunit B [Vibrio sinaloensis DSM 21326]
          Length = 805

 Score =  517 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 227/566 (40%), Positives = 345/566 (60%), Gaps = 17/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I V
Sbjct: 2   SENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDCSVSVRDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS ++ +T+ R   I +Q +  G P +PL    +  +K GT I F P  + F + 
Sbjct: 121 SVVNALSKQVTLTIHRGGQIHTQTYHHGEPQAPLAVIGET-DKTGTEIRFWPSEETFSNT 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V      ++E        + + F + GG++ +++    N
Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLRDERE------EDKNDHFMYEGGIQAFVEHLNTN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  ++F    E++      VE A+ W +     I  + N I   +GGTH +G R AL
Sbjct: 233 KTPIIEKVFHFNAERED--GIAVEVAMQWNDGYQENIYCFTNNIPQRDGGTHLAGFRAAL 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLAD 455
           E A+ +    +LV++P EA  +   +I+ +  R   RK      RK A+    LPGKLAD
Sbjct: 351 EQAMGEKLSEFLVEHPAEAKTVCTKIIDAARARDAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  DE+   + 
Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMNQY 556



 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
             LE   K  +  + + R+KGLGEM   QL ET MD   R +++V I   +         
Sbjct: 722 DALEWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVG----ADQL 777

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
              LMG + + R  FI+E A  + ++ 
Sbjct: 778 FTTLMGDQVEPRRNFIEENALKVANLD 804


>gi|206560814|ref|YP_002231579.1| DNA topoisomerase IV subunit B [Burkholderia cenocepacia J2315]
 gi|198036856|emb|CAR52756.1| topoisomerase IV subunit B [Burkholderia cenocepacia J2315]
          Length = 660

 Score =  517 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 243/676 (35%), Positives = 363/676 (53%), Gaps = 47/676 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +  S  Y  +SI++L+GLEPV+ RPGMY   T  +   H+  EVIDNA DE + GY 
Sbjct: 1   MSTKKPSAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYG 57

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151
             I V+L  +  ++V D+GRGIP   HP+      +EI+ T LHAGGKFD      Y  S
Sbjct: 58  KQITVTLHADQSVSVEDDGRGIPFGMHPE-EGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK--EKVRNKRGTRITF 209
           GGLHGVG+SV NAL+  L VTV R   +    F+ G  + PL  +   +   K GTR+  
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKMAELGFAEGDVVKPLATQAVGRGEKKSGTRVQV 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P+PK F          L ++ +SKA L   V+     +K         E++ + +  GL
Sbjct: 177 WPNPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVVLVNEK-------TGERQTWKYEDGL 228

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE---------WAIAWCEENP-EITSYC 319
           + YL  ++    L+       + E+    R T E         W +AW EE      SY 
Sbjct: 229 RGYLLDEMNGSELLIP---LFEGERFADSRSTDETFAEGEGASWVVAWSEEGSLVRESYV 285

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPE 378
           N I T  GGTHESGLR  L + +K + EL     + + ++++D+      +LS  + +P+
Sbjct: 286 NLIPTPAGGTHESGLREGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQ 345

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
           F GQ K +L S DA + V +  R   + +L Q+     KL E VI++++ R R  ++ E 
Sbjct: 346 FQGQIKERLNSRDAVKLVSSFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKVEK 405

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +  L  PGKL DC        ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN
Sbjct: 406 RKSSGVAVL--PGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLN 463

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLL 555
                 +++  N ++ D+  A+G    S        +LRY K+ I++DADVDG+HI  LL
Sbjct: 464 TWETERDRLFANNEVHDISVAIGVDPHSPDDGVDLSNLRYGKICILSDADVDGSHIQVLL 523

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG- 608
           LT F++    LIE+ H+++  PPLFR+    +G K    +YA D+   + IL++ +K G 
Sbjct: 524 LTLFFKHFPQLIERGHVYVARPPLFRVDAPARGKKPAQKLYALDDGELEAILDKLRKDGV 583

Query: 609 -KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-K 666
              +  ISRFKGLGEM A QL +T M+ + R L+ V++       + T   +  LMG  +
Sbjct: 584 RDTQWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKL--GELDYEATVARMTMLMGKGE 641

Query: 667 ADERFKFIQERASFID 682
           A  R  +++E+ + ++
Sbjct: 642 AAARRGWLEEKGNDVE 657


>gi|254251764|ref|ZP_04945082.1| Type IIA topoisomerase [Burkholderia dolosa AUO158]
 gi|124894373|gb|EAY68253.1| Type IIA topoisomerase [Burkholderia dolosa AUO158]
          Length = 660

 Score =  517 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 238/673 (35%), Positives = 357/673 (53%), Gaps = 41/673 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +  S  Y  +SI++L+GLEPV+ RPGMY   T  +   H+  EVIDNA DE + GY 
Sbjct: 1   MSTKKPSAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYG 57

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151
             I V+L  +  ++V D+GRGIP   HP+      +EI+ T LHAGGKFD      Y  S
Sbjct: 58  KQITVTLHADHSVSVEDDGRGIPFGLHPE-EGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--LEKKEKVRNKRGTRITF 209
           GGLHGVG+SV NAL+  L VTV R   I    F+ G  + P   +   +   K GTR+  
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKIAELGFADGDVVKPLSTQPAGRGDKKSGTRVQV 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P+PK F          L ++ +SKA L   V+     +K         E++ + +  GL
Sbjct: 177 WPNPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVVLVNEK-------TGERQTWKYDDGL 228

Query: 270 KTYLQTKLENRSLISSEI------FTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTI 322
           + YL  ++    L+           +   +          W +AW EE      SY N I
Sbjct: 229 RGYLLDEMNGSELLIPLFEGERFADSRSGDDTFAEGEGASWVVAWSEEGSLVRESYVNLI 288

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAG 381
            T  GGTHESGLR  L + +K + EL     + + ++++D+      +LS  + +P+F G
Sbjct: 289 PTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQG 348

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           Q K +L S DA + V +  R   + +L Q+     KL E VI++++ R R  ++ E  + 
Sbjct: 349 QIKERLNSRDAVKLVSSFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKVEKRKS 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +  L  PGKL DC        ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN   
Sbjct: 409 SGVAVL--PGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWE 466

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLLTF 558
              +++  N ++ D+  A+G             +LRY K+ I++DADVDG+HI  LLLT 
Sbjct: 467 TERDRLFANNEVHDISVAIGVDPHGPDDSVDLSNLRYGKICILSDADVDGSHIQVLLLTL 526

Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KG 610
           F++    LIE+ H+++  PPLFR+    +G K    +YA DE   + IL++ +K G  + 
Sbjct: 527 FFKHFPQLIERGHVYVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDGVRET 586

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669
           +  ISRFKGLGEM A QL +T M+ + R L+ V++ +           +  LMG  +A  
Sbjct: 587 QWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKLGELDYDATVA--RMTMLMGKGEAAA 644

Query: 670 RFKFIQERASFID 682
           R  +++E+ + ++
Sbjct: 645 RRGWLEEKGNDVE 657


>gi|220933197|ref|YP_002512096.1| DNA gyrase, B subunit [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994507|gb|ACL71109.1| DNA gyrase, B subunit [Thioalkalivibrio sp. HL-EbGR7]
          Length = 807

 Score =  517 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 227/565 (40%), Positives = 344/565 (60%), Gaps = 19/565 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
             +   +  YD+S+I++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY
Sbjct: 1   MTDPQQAKTYDSSNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGY 60

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
            N I+V +  +G ++V D+GRGIPV+ HP+   +S  E+I+T LHAGGKFD+++Y++SGG
Sbjct: 61  CNKIQVIIHSDGSVSVQDDGRGIPVDIHPE-EGRSAAEVIMTVLHAGGKFDDNSYKVSGG 119

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS+ L +T+ R + +  Q +  G+P +PL +        GTR+ FRP  
Sbjct: 120 LHGVGVSVVNALSEWLELTIFRNSRVHRQVYRLGVPDAPLAEVGDT-ELTGTRVHFRPST 178

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IF D   F    L K  +  ++L+  V+   S ++   E       + F + GG++ ++
Sbjct: 179 EIFSDT-EFHYDILSKRLRELSFLNSGVRIQLSDERSGKE-------DVFEYQGGIRAFV 230

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +    N++ +   +     ++      TVE A+ W +     I  + N I   +GGTH +
Sbjct: 231 EHLNRNKTPLHQNVIYCVADRDDI---TVEVALQWNDSYQENIFCFTNNIPQRDGGTHMA 287

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTRG+ +Y E      K+ ++   DD       +LSV + +P+F+ QTK KLVS 
Sbjct: 288 GFRAALTRGLNQYMEAEGILKKQKVATTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSS 347

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRL 449
           + +  VE  L D    +L++NP +A  +   +I+ +  R   R+      RK A+    L
Sbjct: 348 EVKAVVEGVLYDHLQSFLLENPGDAKVITAKIIDAARARDAARRAREMTRRKGALDVAGL 407

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +ELF+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ +
Sbjct: 408 PGKLADCQEKDPALSELFLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLS 467

Query: 510 NQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           + ++  L+ ALGC         + LRY ++IIMTDADVDG+HI +LLLTFFY++M  LIE
Sbjct: 468 SAEVGTLITALGCGIGKDEFNADKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPVLIE 527

Query: 569 QKHLFLISPPLFRITQGTKSVYAHD 593
           + H+++  PPL+++ +G +  Y  D
Sbjct: 528 RGHVYIAQPPLYKVKKGKQEQYVKD 552



 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            +++++      +  + + R+KGLGEM   QL ET M+A  R LL+V+I   +       
Sbjct: 722 FRQVMDWLLGEARRGLNVQRYKGLGEMNPEQLWETTMNAETRRLLQVKIEDAVR----AD 777

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           +    LMG + + R +FI+  A    ++ 
Sbjct: 778 EVFTTLMGDQVEPRREFIEANALTASNID 806


>gi|219870586|ref|YP_002474961.1| DNA gyrase subunit B [Haemophilus parasuis SH0165]
 gi|219690790|gb|ACL32013.1| DNA gyrase subunit B [Haemophilus parasuis SH0165]
          Length = 810

 Score =  517 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 236/586 (40%), Positives = 353/586 (60%), Gaps = 20/586 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
            + Q+  ++YD+SSI++L GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY
Sbjct: 1   MSEQNQPNSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGY 60

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
            N I V++  +  ++V D+GRGIPV  HP+    S  E+I+T LHAGGKFD+++Y++SGG
Sbjct: 61  CNDIVVTIHSDNSVSVQDDGRGIPVGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGG 119

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS +L +T+ R+  +  Q +S G P +PL    +     GT + F P  
Sbjct: 120 LHGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGDPDAPLAVIGETEK-TGTTVRFWPSY 178

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF +K  F+ A L K  +  ++L+  V      ++   E       E F + GG++ Y+
Sbjct: 179 DIFKNKTEFEYAILSKRLRELSFLNSGVSIRLVDERNDKE-------EHFKYEGGIRAYV 231

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   E +++I    F   TEK G     +E ++ W +     +  + N I   +GGTH +
Sbjct: 232 EYLNEGKNVIHPTPFYLSTEKDGI---GIEISMQWNDSFNENVYCFTNNIPQRDGGTHLA 288

Query: 333 GLRVALTRGIKKYAELTQNKRA----ISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           G R ALTR +K Y E     +     I    DD     V ++SV + +P+F+ QTK KLV
Sbjct: 289 GFRGALTRALKNYMETGAKLKKEDAKIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLV 348

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447
           S + +  +E+++ +    YL++NP +A  ++  +I+ +  R   RK R    RK A+   
Sbjct: 349 SSEVRNPLESSMNEALQEYLLENPNDAQNIVTKIIDAARAREAARKAREMTRRKGALDLG 408

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +EL++VEGDSAGGSAKQ R+R NQA+LPL+GKILNV  A  +K+
Sbjct: 409 GLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKM 468

Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
            ++Q++  L+ ALG    R +Y  E LRY K+IIMTDADVDGAHI +LLLTFFY++M +L
Sbjct: 469 LSSQEVATLITALGAGIGRDEYNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPEL 528

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612
           IE+ ++++  PPL+++ +G +  Y  D    ++        G    
Sbjct: 529 IERGYVYIAQPPLYKVKKGKQEKYIQDNTEMEQYELALALDGASLY 574



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 8/104 (7%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G +             ++   K  +  + I R+KGLGEM   QL ET MD   R +L
Sbjct: 714 VQRGERQQSIESVAE---AIDWLVKESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKML 770

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R  FI+  A +  ++ 
Sbjct: 771 QVTITDAI----AADKLFTTLMGDEVEPRRDFIENNALYA-NLD 809


>gi|145297128|ref|YP_001139969.1| DNA gyrase subunit B [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142849900|gb|ABO88221.1| DNA gyrase subunit B [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 804

 Score =  517 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 232/575 (40%), Positives = 354/575 (61%), Gaps = 18/575 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
           + + YD+S+I++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGY + I 
Sbjct: 2   SENTYDSSNIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGYCSDIL 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V +  +G ++V DNGRGIPV+ H +   +S  E+I+T LHAGGKFD+++Y++SGGLHGVG
Sbjct: 62  VKIHSDGSVSVRDNGRGIPVDMHEE-EGRSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALSD+L +T+ R   ++ Q +  G P +PL++     +  GT + F P P IF D
Sbjct: 121 VSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTD 180

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              +    L K  +  ++L+  V      +++  E         F + GG+K +++   +
Sbjct: 181 TL-YHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVEYLNQ 232

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G R A
Sbjct: 233 NKTPIHPKVFHFSTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTA 289

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  
Sbjct: 290 LTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTA 349

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454
           VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLA
Sbjct: 350 VEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLA 409

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++ 
Sbjct: 410 DCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVG 469

Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            L+ ALGC   R +Y  + LRY  +IIMTDADVDGAHI +LLLTFFY++M ++IE+ +++
Sbjct: 470 TLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGAHIRTLLLTFFYRQMPEIIERGYIY 529

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +  PPL+++ +G +  Y  DE+   +        G
Sbjct: 530 IAQPPLYKVKKGKQEQYLKDEDALLQYQTAMALDG 564



 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G K        +  + ++     GK  I I R+KGLGEM   QL ET MD   R +L
Sbjct: 707 IKRGEKV---KPIANFVEAVDWLMGEGKRGIYIQRYKGLGEMNPDQLWETTMDPEARRML 763

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           RV I+  +          + LMG   + R  FI+  A  + ++ 
Sbjct: 764 RVTIDDAVG----ADQLFSTLMGDAVEPRRDFIETNALRVANLD 803


>gi|289207191|ref|YP_003459257.1| DNA gyrase subunit beta [Thioalkalivibrio sp. K90mix]
 gi|288942822|gb|ADC70521.1| DNA gyrase, B subunit [Thioalkalivibrio sp. K90mix]
          Length = 810

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 235/573 (41%), Positives = 351/573 (61%), Gaps = 18/573 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + YD+S IR+L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + IEV+
Sbjct: 10  ETYDSSQIRVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDTIEVT 69

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  ++V DNGRGIPV+ H +   KS  E+ILT LHAGGKFDN++Y++SGGLHGVG+S
Sbjct: 70  IHEDNAVSVSDNGRGIPVDIHEE-EGKSAAEVILTVLHAGGKFDNNSYKVSGGLHGVGVS 128

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+EL + + R      Q +  G+P +PL       ++ GTRI FRP  +IF D  
Sbjct: 129 VVNALSEELRLEIHRAGERHEQVYHLGVPDAPLAVAGST-DRTGTRIWFRPSDEIFTDI- 186

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L K  +  ++L+  V+      ++  E       E F F GG++ +++   + +
Sbjct: 187 EFHYEILAKRLRELSFLNSGVRITLRDQRDNRE-------ETFLFEGGIRAFVEHLNQKK 239

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + +   +      ++  +   VE A+ W +     I  Y N I   +GGTH +G R ALT
Sbjct: 240 TALHPTVIYANQTREDDY--VVEVALQWNDSYQENIFCYTNNIPQRDGGTHMAGFRAALT 297

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R + +Y E      K  ++   DD+      +LSV + +P+F+ QTK KLVS + +  VE
Sbjct: 298 RTVNQYLEKEGLIKKAKVATAGDDMREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKPIVE 357

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
           + L D   ++L++NP EA  + + V+E +  R   RK RE   RK A+    LPGKLADC
Sbjct: 358 SVLSDALTNFLLENPPEAKAITDKVLEAARAREAARKAREVTRRKGALDIAGLPGKLADC 417

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +++  + ++  L
Sbjct: 418 QEKDPAHSELYLVEGDSAGGSAKQGRDRHFQAILPLKGKILNVERARFDRMLGSAEVGTL 477

Query: 517 VQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           + ALGC   + +Y  + LRY ++IIMTDADVDG+HI +LLLTFF+++M +LIE+ H+++ 
Sbjct: 478 ITALGCGIGKDEYDPDKLRYHRIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGHVYIA 537

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
            PPL++I +G +  Y  DE    +I+      G
Sbjct: 538 QPPLYKIKRGKREQYVRDEAEMGEIVVSLALDG 570



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
             + +E   + G+  +   R+KGLGEM   QL ET M+   R LL+V +   +       
Sbjct: 725 FSEAMEWLLQEGRRGLATQRYKGLGEMNPEQLWETTMNPETRRLLQVRVEDAIR----AD 780

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           +    LMG + + R  FI+ RA   ++V 
Sbjct: 781 EIFTTLMGDQVEPRRDFIESRALSAENVD 809


>gi|269799054|gb|ACZ43805.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 656

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 229/578 (39%), Positives = 352/578 (60%), Gaps = 18/578 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
           + +NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   + 
Sbjct: 2   SENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCTDVV 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +G ++V D+GRGIPV+ H +    S  E+ILT LHAGGKFD+++Y++SGGLHGVG
Sbjct: 62  VTIHEDGSVSVSDDGRGIPVDIHEE-EGVSAAEVILTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS++L +T+ R   I  Q +  G P +P+     + +  GT + F P  + F +
Sbjct: 121 VSVVNALSEKLELTIHRHGHIHQQIYRHGEPQAPIAVIGDI-DTTGTELRFWPSHETFTN 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++E        + + F + GG+K ++     
Sbjct: 180 TL-FHYDILAKRLRELSFLNSGVSIKLIDERED------GKSDHFVYEGGIKAFVDYLNV 232

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ I+ + F    E++     TVE A+ W +     I  + N I   +GGTH +G R A
Sbjct: 233 NKTPINKDAFHFSVERED--GITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGA 290

Query: 338 LTRGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           LTR +  Y E     +  ++ +   DD       ++SV + +P+F+ QTK KLVS + + 
Sbjct: 291 LTRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKS 350

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE A+ +    YL++NP EA+ ++  +I+ S  R   RK R    RK A+    LPGKL
Sbjct: 351 AVEQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKAREMTRRKGALDLAGLPGKL 410

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 411 ADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 470

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ A+GC   R +Y  +  RY ++IIMTDADVDG+HI +LLLTFF+++M +LIE+ ++
Sbjct: 471 ATLITAMGCGIGRDEYNPDKTRYHQIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYI 530

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           ++  PPL+++ +G +  Y  D+    + L      G G
Sbjct: 531 YIAQPPLYKMKKGKQERYIKDDADLTQYLTTIALDGAG 568


>gi|15603341|ref|NP_246415.1| DNA gyrase subunit B [Pasteurella multocida subsp. multocida str.
           Pm70]
 gi|12721859|gb|AAK03560.1| GyrB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 806

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 233/565 (41%), Positives = 351/565 (62%), Gaps = 19/565 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           + +  +NY A+SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGYA 
Sbjct: 2   SNNTPENYGANSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYAK 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V D+GRGIPV+ HP+    S  E+I+T LHAGGKFD+++Y++SGGLH
Sbjct: 62  DITVTIHTDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD+L +T+ RQ  +  Q +  G P +PL    +  ++ GT + F P P I
Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGKVHEQIYHLGEPQAPLAAIGET-DQTGTTVRFWPSPTI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   F+   L K  +  ++L+  V       +          ++ F++ GG++ +++ 
Sbjct: 180 FNNI-EFEYDILAKRLRELSFLNSGVSIKLFDKR-------NDRQDHFHYEGGIQAFVEY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              N++ I  + F   TEK G     VE ++ W +     +  + N I   +GGTH +G 
Sbjct: 232 LNRNKNPIHQKPFYFSTEKDGI---GVEVSMQWNDSFNENVYCFTNNIPQRDGGTHLAGF 288

Query: 335 RVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y +      K  ++   DD     V I+SV + +P+F+ QTK KLVS + 
Sbjct: 289 RGALTRSLNNYMDNEGHNKKSKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEV 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451
           +  VE+ + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPG
Sbjct: 349 KSAVESVMNEYLQQYLLENPSDAKIIVGKIIDAARAREAARKAREMTRRKGALDLGGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++ 
Sbjct: 409 KLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSA 468

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALGC   R +Y  E LRY  +IIMTDADVDGAHI +LLLTFFY++M +LIE+ 
Sbjct: 469 EVGTLITALGCGIGRDEYNPEKLRYHSIIIMTDADVDGAHIRTLLLTFFYRQMPELIERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEE 595
           H+++  PPL+++ +G +  Y  D+E
Sbjct: 529 HVYIAQPPLYKVKKGKQEQYIKDDE 553



 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 5/89 (5%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ +E   K  +  + + R+KGLGEM   QL ET MD N R +L+V I   +       
Sbjct: 722 FEQAIEWLVKESRRGLMVQRYKGLGEMNPEQLWETTMDPNARRMLKVSIKDAV----AAD 777

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG + + R +FI+  A    ++ 
Sbjct: 778 LLFTTLMGDEVEPRREFIESNALHA-NLD 805


>gi|33596500|ref|NP_884143.1| DNA topoisomerase IV subunit B [Bordetella parapertussis 12822]
 gi|33602205|ref|NP_889765.1| DNA topoisomerase IV subunit B [Bordetella bronchiseptica RB50]
 gi|33566269|emb|CAE37180.1| topoisomerase IV subunit B [Bordetella parapertussis]
 gi|33576643|emb|CAE33721.1| topoisomerase IV subunit B [Bordetella bronchiseptica RB50]
          Length = 670

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 249/668 (37%), Positives = 353/668 (52%), Gaps = 39/668 (5%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A+  Y  +SIR+L+GLEPVR RPGMY   T  +   H+  EVIDNA DE +AGY   I+V
Sbjct: 19  ATPRYTEASIRVLKGLEPVRQRPGMY---TRTENPLHIVQEVIDNAADEALAGYGKQIQV 75

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLHG 156
           +L G+G ++V D+GRGIPV  HP+  N   +E++ T LHAGGKFD      Y  SGGLHG
Sbjct: 76  TLHGDGSISVEDDGRGIPVGLHPE-ENAPVVELVFTRLHAGGKFDKQGGGAYAFSGGLHG 134

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK-EKVRNKRGTRITFRPDPKI 215
           VG+SV NAL+  L V V R   +    F+ G  +  L    E  R K GTR+   PD K 
Sbjct: 135 VGVSVTNALATRLEVVVWRDGAVHRLVFAGGDVIEALAPYPEGGRKKSGTRVRVWPDAKY 194

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F        A L  + +SKA L   VK     +K         +   + +  GL+ YL  
Sbjct: 195 FDS-PAIPMAELTHLLRSKAVLLPGVKVSLVNEK-------TGDTRTWQYQEGLRGYLAE 246

Query: 276 KLENRSLISS----EIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTH 330
            L    L+      + + G            +W +AW E+      SY N I T  GGTH
Sbjct: 247 ALAGAELMIPFFEGQQYAGADHDSFAEGEGAQWVVAWAEDGNVVRESYVNLIPTPAGGTH 306

Query: 331 ESGLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           ESGLR  L   +K +AE  +   + + ++ +D+   A  +LS  + +P+F GQ K +L S
Sbjct: 307 ESGLREGLFGAVKGFAELHSLLPKGVKLLPEDVFARASFVLSAKVLDPQFQGQIKERLNS 366

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
            DA R V    +   D +L  N     KL E  I +++ R R    ++V ++ +     L
Sbjct: 367 RDAVRLVGGFAKSALDLWLHSNVEYGKKLAELAIRQAQARQR--SAQKVEKRKSSGVAVL 424

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKL DC  + A  TE+F+VEGDSAGGSAK  R++  QA+LPLRGK+LN      +++  
Sbjct: 425 PGKLTDCESSDASRTEVFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNSWEVDRDRLFA 484

Query: 510 NQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           N +I D+  A+G        E D   LRY ++ I++DADVDG+HI  LLLT FY+    L
Sbjct: 485 NNEIHDISVAIGVDPHGPGDEPDLSGLRYGRICILSDADVDGSHIQVLLLTLFYRHFPKL 544

Query: 567 IEQKHLFLISPPLFRIT---QGT---KSVYAHDEEHKQKILEEFKKHG--KGKIEISRFK 618
           IE  ++F+  PPLFR+    QG    + +Y  D    +   ++ +K G  +    +SRFK
Sbjct: 545 IEAGNVFVARPPLFRVDVPAQGKRPARKIYCLDAGELEAAQDKLRKEGVRESAWSVSRFK 604

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQER 677
           GLGEM   QL ET M+ + R LL V       +  DT    + LMG  ++ +R  +I+E+
Sbjct: 605 GLGEMNPEQLWETTMNPDTRRLLPVGYGD--LTPGDTTRMFDMLMGKGESSQRRAWIEEK 662

Query: 678 ASFIDDVG 685
            +  + + 
Sbjct: 663 GNLAE-LD 669


>gi|152977818|ref|YP_001343447.1| DNA gyrase subunit B [Actinobacillus succinogenes 130Z]
 gi|150839541|gb|ABR73512.1| DNA gyrase, B subunit [Actinobacillus succinogenes 130Z]
          Length = 811

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 232/570 (40%), Positives = 352/570 (61%), Gaps = 24/570 (4%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           +++ ++NY A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY  
Sbjct: 2   SENTAENYGAGSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCK 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V D+GRGIPV+ HP+    S  E+I+T LHAGGKFD+++Y++SGGLH
Sbjct: 62  DIIVTIHEDNSISVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD+L +T+ RQ  +  Q +  G P +PL+         GT + F P   I
Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQAPLKIIGDSEK-TGTTVHFWPSSAI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     F+   L K  +  ++L+  V      +++        + + F++ GG++ +++ 
Sbjct: 180 FTKTV-FEYDILKKRLRELSFLNSGVSIKLFDERD-------GKNDHFHYEGGIQAFVEF 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             +N++ I  + F    EK+G     VE A+ W +     I  + N I   +GGTH +G 
Sbjct: 232 LNQNKTPIHQKPFYFTMEKEGI---GVEVALQWNDSYNENIYCFTNNIPQRDGGTHLAGF 288

Query: 335 RVALTRGIKKYAELTQN-------KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           R ALTR +  Y + +         K  +    DD     V ++SV + +P+F+ QTK KL
Sbjct: 289 RGALTRTLNAYMDKSGLNKKGKSDKDKVDTSGDDAREGLVAVISVKVPDPKFSSQTKDKL 348

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRK 446
           VS + +  VE+A+ +    YL +NP +A  +   ++E +  R   RK RE+ R+   +  
Sbjct: 349 VSSEVKGAVESAMNERLQEYLEENPNDAKIIATKIVEAARAREAARKAREMTRRKGVLDI 408

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 409 AGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 468

Query: 507 IRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           + ++Q++  L+ ALGC   R +Y  E LRY K+IIMTDADVDG+HI +LLLTFFY++M +
Sbjct: 469 MLSSQEVGTLITALGCGIGRDEYNPEKLRYHKIIIMTDADVDGSHIRTLLLTFFYRQMPE 528

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEE 595
           LIE+ ++++  PPL+++ +G +  Y  D+E
Sbjct: 529 LIERGYVYIAQPPLYKVKKGKQEQYLKDDE 558



 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 5/89 (5%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ +       +  + + R+KGLGEM   QL ET MD   R +L+V I   +    +  
Sbjct: 727 FEEGINWLVAQSRRGLTVQRYKGLGEMNPEQLWETTMDPEARHMLQVTIKDAV----EAD 782

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG + + R  FI+  A    ++ 
Sbjct: 783 QLFTTLMGDEVEPRRDFIETNALRA-NLD 810


>gi|28211416|ref|NP_782360.1| DNA topoisomerase IV subunit B [Clostridium tetani E88]
 gi|28203857|gb|AAO36297.1| DNA gyrase subunit B [Clostridium tetani E88]
          Length = 651

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 227/658 (34%), Positives = 349/658 (53%), Gaps = 36/658 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NYD S++  LE LEPVR+RPGMYIG T  K LHH   E++DN++DE+  GY +   + L+
Sbjct: 10  NYDVSTLTSLEKLEPVRVRPGMYIGSTGAKGLHHCVWEILDNSIDEISNGYGDTATIILN 69

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +T++DNGRGIP   HP    KS +E++ T LH G KF+NS Y+ SGGLHGVG SVV
Sbjct: 70  KDKSVTIMDNGRGIPTGIHP-IKKKSGIEMVFTELHTGSKFNNSVYKTSGGLHGVGASVV 128

Query: 163 NALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTRITFRP 211
           NALS  L V V++   I+ Q+F             G+P+  +E   K ++  GT+I+F P
Sbjct: 129 NALSKWLEVEVSQNGNIYKQRFEYAYDKKLKKNMPGMPIGQVEIVGKSKS-TGTKISFLP 187

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           D  +F     F    + +  Q  A+ +  +   +  ++          ++E++   GL  
Sbjct: 188 DDDVFSTT-DFKFEIIDERLQELAFQNQGITLKFIDNR-----GEETVEKEYHSKRGLLD 241

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGT-HRGTVEWAIAWCE-ENPEITSYCNTILTDEGGT 329
           ++    E++++I +     + E++    R   E  I + +     I  Y N I T E GT
Sbjct: 242 FIDYLNESKTIIHNPPILFEGEREIKGIRIHGEVCIQFTDSTTENIAGYVNNIPTTESGT 301

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           HE+G ++ +TR  K++A+       +      DDL      I+ V I  P F GQTKTKL
Sbjct: 302 HETGFKMGMTRAFKEWAKKLNLIKDKDKDFEGDDLREGMTAIVKVKINNPIFEGQTKTKL 361

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL 447
            + +A   +          ++  N   AT ++   +E +  R + +K  E  RK   +  
Sbjct: 362 GNNEAYTLMNELTYTKLCEWIEDNKETATLIMNNALEVATRREKIKKINEAERKKVGKGT 421

Query: 448 -RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             L GK+A C+       E  +VEGDSAGGSAKQAR+R  Q ++P +GKI+N      E 
Sbjct: 422 APLAGKVAVCTLRNPKLCEFIVVEGDSAGGSAKQARDRKFQTIMPSKGKIMNTEKQKIEN 481

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           +  ++++     A+G      YREEDL+Y K+IIM+DADVDG HI +L +T+ Y+ M  L
Sbjct: 482 VIGSEELKIFNTAIGTGVLENYREEDLKYHKIIIMSDADVDGFHIRTLWMTYIYRYMKQL 541

Query: 567 IEQKHLFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
           I   HL++  PPL+R+ +  K    S YA++++  +KI +E  K       + R+KGLGE
Sbjct: 542 ITNGHLYVAMPPLYRVYKNLKGKEISKYAYNDDDLEKIKKELGK----GTNVQRYKGLGE 597

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           M   QL ET ++   R L ++ I+         +  ++ LMG   + R K+I +   F
Sbjct: 598 MNPDQLWETTLNPESRILHKITIDD----AAKAEKMVSLLMGDVVEPRKKYIYKYCKF 651


>gi|53802866|ref|YP_115417.1| DNA gyrase subunit B [Methylococcus capsulatus str. Bath]
 gi|53756627|gb|AAU90918.1| DNA gyrase, B subunit [Methylococcus capsulatus str. Bath]
          Length = 804

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 227/573 (39%), Positives = 355/573 (61%), Gaps = 19/573 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANL 96
            +  + YD+S I+IL+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGY   
Sbjct: 2   TTKPNEYDSSHIKILKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEAMAGYCKR 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V++  +  +TV D+GRGIPV+ HP+   +S  E+I+T LHAGGKFD++ Y++SGGLHG
Sbjct: 62  ICVTVHEDESVTVSDDGRGIPVDIHPE-EGRSAAEVIMTVLHAGGKFDDNAYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+SVVNALS+ L + + R    + Q++  G PL+PL +     +  GT + F+P P+IF
Sbjct: 121 VGVSVVNALSERLWLEICRGGRRYRQEYRDGEPLAPLAEVGPA-DTTGTTVRFKPSPQIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   F    L K  +  ++L+  V+      +         + E F F GG++ +++  
Sbjct: 180 SNI-EFHYEILAKRLRELSFLNSGVRIELEDKRS-------GKNEVFEFEGGIRAFVEHL 231

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            +N++ +  ++F  + E+ G     VE A+ W +     +  Y N I   +GGTH +G R
Sbjct: 232 NKNKTPLFDKVFHLQAERDGV---GVEIAMQWNDSYQENVFCYTNNIPQRDGGTHLAGFR 288

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR + +Y E      K+ ++ + DD       +LSV + +P+F+ QTK KLVS + +
Sbjct: 289 AALTRTVNQYIEEQGLLKKQKVATVGDDAREGLTAVLSVKVPDPKFSSQTKEKLVSSEVK 348

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGK 452
             VE+ + +  + +L++NP  A  +   V++ +  R   RK R    RK+A+    LPGK
Sbjct: 349 SVVESVMAEKLNDFLLENPSIARTIANKVVDAARAREAARKAREMTRRKSALDIAGLPGK 408

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +     +ELFIVEGDSAGGSAKQ R+R +QA+LPL+GKILNV  A  +K+ ++++
Sbjct: 409 LADCQEKDPALSELFIVEGDSAGGSAKQGRDRRSQAILPLKGKILNVERARFDKMLSSEE 468

Query: 513 IMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +  L+ ALGC   R +Y  + LRY ++IIMTDADVDG+HI +LLLTFFY++M +L+++ H
Sbjct: 469 VGTLITALGCGIGREEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELVDRGH 528

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           +++  PPL+++ +G +  Y  D+    + L + 
Sbjct: 529 VYIAQPPLYKVKKGRQEHYVKDDAELNEYLLQL 561



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 9/106 (8%)

Query: 585 GTKSVYAHDEEHK-----QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           G  S    ++E +     +++ +      K    I R+KGLGEM   QL ET +DAN R 
Sbjct: 702 GDTSTVCFNDERRPVRSFKELFDWMLTEAKKGQHIQRYKGLGEMNPEQLWETTLDANTRR 761

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           LL+V I   +       +    LMG + + R +FI+  A  + ++ 
Sbjct: 762 LLQVRIEDAI----AADEVFTTLMGDQVEPRREFIERNALQVANLD 803


>gi|307133244|ref|YP_003885260.1| DNA gyrase subunit B [Dickeya dadantii 3937]
 gi|306530773|gb|ADN00704.1| DNA gyrase subunit B [Dickeya dadantii 3937]
          Length = 803

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 225/566 (39%), Positives = 344/566 (60%), Gaps = 17/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L + + R+  I  Q++  G P +PL             + F P  + F + 
Sbjct: 121 SVVNALSEKLELVIRREGKIHRQEYRHGEPQAPLSVTGDADTTGT-TVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V      ++E        + + F++ GG+K +++    N
Sbjct: 180 VEFEYEILAKRLRELSFLNSGVSIRLRDERE------ENKADHFHYEGGIKAFVEYLNRN 233

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  ++F    EK       VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 234 KTPIHPQVFYFSAEKDDI---GVEIAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNNYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+ + D    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 351 ESLMNDRLVDYLMENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+F+
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVFI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  D+E   + 
Sbjct: 531 AQPPLYKVKKGKQEQYIKDDEAMDQY 556



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 718 FEQALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 773

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           +    LMG   + R  FI+E A    ++ 
Sbjct: 774 ELFTTLMGDAVEPRRAFIEENALKAANID 802


>gi|260774984|ref|ZP_05883884.1| DNA gyrase subunit B [Vibrio coralliilyticus ATCC BAA-450]
 gi|260609074|gb|EEX35233.1| DNA gyrase subunit B [Vibrio coralliilyticus ATCC BAA-450]
          Length = 805

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 228/566 (40%), Positives = 347/566 (61%), Gaps = 17/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I V
Sbjct: 2   SENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP E HP+  N S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDCSVSVRDDGRGIPTEMHPE-ENVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS ++ +T+ R   I +Q +  G P +PL    +  +K GT I F P  + F + 
Sbjct: 121 SVVNALSKQVTLTIHRGGQIHTQTYHHGEPQAPLSVIGET-DKTGTEIRFWPSEETFSNT 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V      ++E        + + F + GG++ +++    N
Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLVDERE------EDKSDHFMYEGGIQAFVEHLNTN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  ++F    E++      VE A+ W +     I  + N I   +GGTH +G R AL
Sbjct: 233 KTPIIEKVFHFNAERED--GIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAL 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+ + +    +LV++P EA  +   +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 351 ESVMGEKLSEFLVEHPTEAKAVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  DE+   + 
Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMNQY 556



 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           + L    K  +  + + R+KGLGEM   QL ET MD   R +++V I   +         
Sbjct: 722 EALNWLVKESRRGLSLQRYKGLGEMNPEQLWETTMDPETRRMMQVTIEDAVG----ADQL 777

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
              LMG + + R  FI+E A  + ++ 
Sbjct: 778 FTTLMGDQVEPRRNFIEENALKVANLD 804


>gi|167470305|ref|ZP_02335009.1| DNA topoisomerase IV, B subunit [Yersinia pestis FV-1]
          Length = 593

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 243/611 (39%), Positives = 342/611 (55%), Gaps = 23/611 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
              +Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  I+V
Sbjct: 2   TESSYNADAIEVLSGLEPVRRRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHARRIDV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGI
Sbjct: 59  ILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALS  + VTV R + I+S  F  G  +  L+      +   GT + F PD   F  
Sbjct: 118 SVVNALSKRVEVTVRRDSQIYSIAFENGDKVQDLQVIGTCGKRNTGTSVHFWPDVSFFDS 177

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F  +RL  + ++KA L   V+  +       E       + + +  GL  YL   + 
Sbjct: 178 PR-FSVSRLSHLLKAKAVLCPGVEIVFKDQVNNTE-------QRWCYADGLTDYLMEAVN 229

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336
               +    F G           ++WA+ W  E  E    SY N I T +GGTH +GLR 
Sbjct: 230 GFITLPEAPFVGSFAGDTE---AIDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 286

Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            L   ++ + E      R + + +DD+      +LSV +++P+FAGQTK +L S      
Sbjct: 287 GLLDAMRDFCEYRNILPRGVKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 346

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           V   ++D F  +L QN   A +L E  I  ++ R+R    ++V RK       LPGKLAD
Sbjct: 347 VSGVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C+      TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D
Sbjct: 405 CTSQDLSLTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 464

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  A+G    S+     LRY KV I+ DAD DG HIA+LL   F +    L+   H+++ 
Sbjct: 465 ISVAIGIDPDSEDL-SQLRYGKVCILADADSDGLHIATLLCALFVRHFRALVRNGHVYVA 523

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+RI  G +  YA DEE K  +LE+ K+  +GK  + RFKGLGEM   QL+ET +D 
Sbjct: 524 MPPLYRIDLGKEVFYALDEEEKAGVLEQLKRK-RGKPNVQRFKGLGEMNPLQLRETTLDP 582

Query: 636 NKRTLLRVEIN 646
           N R L+++ I+
Sbjct: 583 NTRRLVQLTIS 593


>gi|323359915|ref|YP_004226311.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Microbacterium testaceum StLB037]
 gi|323276286|dbj|BAJ76431.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Microbacterium testaceum StLB037]
          Length = 689

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 223/687 (32%), Positives = 339/687 (49%), Gaps = 62/687 (9%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y A  +++LEGLE VR RPGMYIG TD + L H   E+IDN++DE +AG+ + I++ 
Sbjct: 2   TSEYSAHHLQVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALAGHGSRIDIV 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +G + V D  RGIPV+  P+    + +E++ T LHAGGKF   +Y  SGGLHGVG S
Sbjct: 62  LHADGSVEVRDRARGIPVDVEPR-TGLTGVEVVFTKLHAGGKFGGGSYAASGGLHGVGAS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------------------RNK 202
           VVNALS+ L V V R    ++  F RG P                            R  
Sbjct: 121 VVNALSERLDVEVDRAGKTYAMSFHRGEPGQFAGDTPDSEFTPFERSSELRVIGKAPRGV 180

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GTRI +  D +IF   A F    L++  +  A+L   ++     ++          +  
Sbjct: 181 TGTRIRYWADRQIFTKDAAFGLDELVQRVRQTAFLVPGLEIVVLDER-----GDEKVETS 235

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTVEWAI 306
           + F GG+  + +    + ++  +   TG                    +      V+ A+
Sbjct: 236 YRFDGGISEFAEFLAPDAAVTDTWRLTGTGTFTETVPVLQPGGSMIPTEVHRECEVDIAV 295

Query: 307 AWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI---SIISDDL 362
            W       T S+ N I T +GGTH+ G    L + ++   E    K  +    I  DDL
Sbjct: 296 RWGTGYDTTTRSFVNIIATPKGGTHQQGFEQGLMKILRAQVEQNARKLKVGNDKIEKDDL 355

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL----VQNPIEATKL 418
           +     +L+V + EP+F GQTK  L +   ++ V + ++             +  +  +L
Sbjct: 356 LAGLTAVLTVRLPEPQFEGQTKEVLGTPAVRQIVASVVQKELAARFASPKRDDKAQTAQL 415

Query: 419 LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           LE ++   + R+  R  +E   RK A+    LP KL DC  N  + +ELFIVEGDSA G+
Sbjct: 416 LEKIVSEMKARISARTHKETQRRKNALESSSLPAKLVDCRSNDVNDSELFIVEGDSALGT 475

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK ARN   QA+LP+RGKILN   A    +  N +   ++Q +G  +   +     RY K
Sbjct: 476 AKLARNSEYQALLPIRGKILNTQKASISDMLGNAECASIIQVIGAGSGRSFDLSAARYGK 535

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI------TQGTKSVYA 591
           +I+M+DADVDGAHI +LLLT F++ M  L+E+  +F   PPL R+      ++  +++Y 
Sbjct: 536 IILMSDADVDGAHIRTLLLTLFFRYMRPLVEEGRVFAAVPPLHRVVVMNPGSKPNETIYT 595

Query: 592 HDEEHKQKILEEFKKHGKGKIE--ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDL 649
           + E+    +L + K+  K   +  + R+KGLGEM A QL  T MD   RTL RV +    
Sbjct: 596 YSEQELHNLLTKLKRSNKR-WQEPVQRYKGLGEMDADQLATTTMDRAGRTLRRVRVQD-- 652

Query: 650 NSLKDTQDSINKLMGTKADERFKFIQE 676
             ++      + LMG+    R +FI +
Sbjct: 653 --MEAAASVFDLLMGSDVAPRREFIID 677


>gi|296313483|ref|ZP_06863424.1| DNA topoisomerase IV, B subunit [Neisseria polysaccharea ATCC
           43768]
 gi|296840002|gb|EFH23940.1| DNA topoisomerase IV, B subunit [Neisseria polysaccharea ATCC
           43768]
          Length = 661

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 242/672 (36%), Positives = 349/672 (51%), Gaps = 38/672 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +    Y  SSI +L+GLEPV+ RPGMY   T   +  H+  EVIDNA DE + G+A  I+
Sbjct: 2   TKKTQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATEID 58

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154
           V +  +G L+V DNGRGIPV  HP       +E++ T LHAGGKF+       Y  SGGL
Sbjct: 59  VRIHDDGSLSVHDNGRGIPVGLHP-VEGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213
           HGVG+SV NALS  L VTV R+  +    F+ G  + PL +  K      GT +   PD 
Sbjct: 118 HGVGVSVTNALSTRLEVTVKREGKVHRIVFAGGDVIEPLTEVGKCAVKDSGTEVRVWPDG 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     +    L ++ ++KA L   V+   +      +       + +++P GLK+YL
Sbjct: 178 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEARTQTWHYPDGLKSYL 233

Query: 274 QTKLENRS-----LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEG 327
              + +              +       +      +A+ W EE      SY N I T  G
Sbjct: 234 TDLIADAQEAVPIFSCENYISDDHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293

Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           GTHE+GL+ A+   +  +  L     R + + SDD+      +LS  + +P+F GQTK K
Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRGVKVQSDDVFGKTAFVLSARVLDPQFQGQTKDK 353

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L + DA + V     DP + +L QN     K+ E  I +++ R+R    +++ +K     
Sbjct: 354 LTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSV--KKIEKKKGSGV 411

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKL DC        ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN      ++
Sbjct: 412 AVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +  N +I D+  A+G          D   LRY K+ I++DADVDG+HI  LLLT FY+  
Sbjct: 472 LFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531

Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHG--KGKIEI 614
             L+   H+++  PPLFR+    QG     +  YA D+     ILE  +K G  +    I
Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDSILERLQKEGVRETAYSI 591

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673
           SRFKGLGEM   QLK+T M  + R LL+V+I +  +   +T+D   KLMG  +A  R  +
Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETRDIFVKLMGKGEAAARRAW 649

Query: 674 IQERASFIDDVG 685
           ++      + + 
Sbjct: 650 MEREGDTAE-LD 660


>gi|148980121|ref|ZP_01815901.1| DNA gyrase subunit B [Vibrionales bacterium SWAT-3]
 gi|145961422|gb|EDK26728.1| DNA gyrase subunit B [Vibrionales bacterium SWAT-3]
          Length = 805

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 232/566 (40%), Positives = 346/566 (61%), Gaps = 17/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           SDNYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ N I V
Sbjct: 2   SDNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCNDIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP E HP+  N S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDNSVSVRDDGRGIPTEIHPE-ENVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS ++ +T+ R   I +Q +  G P +PL       ++ GT I F P  + F + 
Sbjct: 121 SVVNALSKQVTLTIHRGGKIHTQTYHHGEPQAPLAVIGDT-DQTGTEIRFWPSEETFSNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V      ++E        + + F F GG++ ++     N
Sbjct: 180 L-FHYDILAKRLRELSFLNSGVSIKLIDERE------EDKSDHFMFEGGIQAFVDHLNTN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  +IF    E++     TVE A+ W +     I  + N I   +GGTH +G R AL
Sbjct: 233 KTPIIQKIFHFDHERED--GITVEVAMQWNDGYQENIYCFTNNIPQRDGGTHLAGFRAAL 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLAD 455
           E A+ +    +L++NP EA  +   +I+ +  R   RK      RK A+    LPGKLAD
Sbjct: 351 EQAMGEKLSEFLIENPTEAKTVCTKIIDAARARDAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  DE+   + 
Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMNQY 556



 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           + L    K  +  + + R+KGLGEM   QL ET MD   R +++V I   +         
Sbjct: 722 EALNWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVG----ADQL 777

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
              LMG + + R  FI+E A  + ++ 
Sbjct: 778 FTTLMGDQVEPRRNFIEENALKVSNLD 804


>gi|271968328|ref|YP_003342524.1| DNA topoisomerase [Streptosporangium roseum DSM 43021]
 gi|270511503|gb|ACZ89781.1| DNA topoisomerase (ATP-hydrolyzing) [Streptosporangium roseum DSM
           43021]
          Length = 690

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 235/694 (33%), Positives = 335/694 (48%), Gaps = 56/694 (8%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
               S    Y A  + +LEGLE VR RPGMYIG TD + L H   E++DN +DE +AGY 
Sbjct: 1   MTAVSVETGYTARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIVDNGVDEALAGYC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + IEV L  +G + V DNGRGIPV+  PK    + +E++ T LHAGGKF   +Y  SGGL
Sbjct: 61  DRIEVELHADGSIEVRDNGRGIPVDVEPK-SGLAGVELVYTKLHAGGKFGGGSYGASGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP-----LSPLEKKEK----------V 199
           HGVG SVVNALS  L V V R   I    F RG+P       P  K +K           
Sbjct: 120 HGVGASVVNALSSRLDVEVDRDGQIHEISFRRGVPGVFDGDGPTAKFKKKSGLRDGGKLA 179

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
           R   GTR+ F  D +IF  +A      +    +  A+L   +       +          
Sbjct: 180 RKVTGTRVRFWVDHQIFLPEAEVSLDEIHVRLRQTAFLVPGLTLAVRDSR-----GEEAV 234

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTVE 303
           +EEF+F GG+  + +    + ++       G                    +     TV+
Sbjct: 235 EEEFHFDGGISEFTEFLARDEAVCQVLRLQGVGHFHETVPVLDDLGHMTPTEVQRELTVD 294

Query: 304 WAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISD 360
            A+ W +       S+ N I T +GGTH +G   AL R + +    T+  +     +  +
Sbjct: 295 VALRWGKGYDTTVRSFVNVIATPKGGTHVNGFERALVRTLNEQLRETRLLKNGDAPVSRE 354

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D++    G+++V + EP+F GQTK  L +  A R V + +                  L 
Sbjct: 355 DILEGLTGVVTVRVPEPQFEGQTKEVLGTSAASRIVSHVVSRELKELFTNPSRALKPQLR 414

Query: 421 WVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
             +E+           R  +    RKTA+    LP KL DC  +    +ELFIVEGDSA 
Sbjct: 415 AALEKIVAAAKARIAAREHRDNQRRKTALENSALPAKLVDCRSDDVDRSELFIVEGDSAL 474

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           G+A+ AR+   QA+LP+RGKILNV  A    +  N +   ++Q +G  +   +  E  RY
Sbjct: 475 GTARAARDSEFQALLPIRGKILNVQKASVADMLKNTECAAIIQVIGAGSGRSFDIEAARY 534

Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT------KSV 589
            KVI+M DADVDGAHI  LLLT F++ M  ++    +F   PPL RI          K V
Sbjct: 535 GKVILMADADVDGAHIRCLLLTLFHRYMRPMVAAGRVFAAVPPLHRIEVTNPGRGQGKYV 594

Query: 590 YAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648
           Y + +    ++L + ++ GK  K  + R+KGLGEM A QL ET M+   RTL RV I   
Sbjct: 595 YCYSDAELHRVLRDLERRGKRWKDPVQRYKGLGEMDADQLAETTMEPRHRTLRRVRIED- 653

Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
              +++ +   + LMG+    R +FI   A+ +D
Sbjct: 654 ---IEEAERIFDLLMGSDVAPRREFIVGSAAEVD 684


>gi|59710619|ref|YP_203395.1| DNA gyrase subunit B [Vibrio fischeri ES114]
 gi|59478720|gb|AAW84507.1| DNA gyrase, subunit B [Vibrio fischeri ES114]
          Length = 805

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 227/566 (40%), Positives = 346/566 (61%), Gaps = 17/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I V
Sbjct: 2   SENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDNSVSVSDDGRGIPTAIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+++ +T+ R   I  Q +  G P +PL    K  +  GT+I F P  + F + 
Sbjct: 121 SVVNALSEKVELTIHRAGEIHQQVYHHGEPEAPLAVIGKT-DTTGTKIRFWPSEETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V       +E        + + F + GG++ ++Q    N
Sbjct: 180 V-FVYEILAKRLRELSFLNSGVSIKLQDMRE------EDKADHFMYEGGIQAFVQHLNRN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  ++F   +E++     +VE ++ W +     I  + N I   +GGTH +G R AL
Sbjct: 233 KTPIHQKVFHFDSERED--GISVEVSMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSAL 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNTFMDKEGFSKKAKAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 351 ESAMGEKLSEFLAENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPGLSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVGT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  DE+   + 
Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMAEY 556



 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            +  L    K  +    + R+KGLGEM   QL ET MD   R +++V IN  +       
Sbjct: 720 FEDALAWLTKESRRGFSLQRYKGLGEMNPEQLWETTMDPESRRMMQVTINDAV----AAD 775

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           +    LMG + + R  FI+E A  + ++ 
Sbjct: 776 ELFTTLMGDQVEPRRNFIEENALRVSNLD 804


>gi|315178623|gb|ADT85537.1| DNA gyrase, subunit B [Vibrio furnissii NCTC 11218]
          Length = 805

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 228/566 (40%), Positives = 350/566 (61%), Gaps = 17/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGY   I V
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDNSVSVSDDGRGIPTELHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+++ +T+ R   + +Q +  G+P +PL       ++ GT + F P  + F + 
Sbjct: 121 SVVNALSEKVVLTIHRGGKVHTQTYRHGVPEAPLAVVGDT-DRSGTMVRFWPSAETFTNI 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V      ++E        +++ F + GG++ ++     N
Sbjct: 180 -EFHYEILAKRLRELSFLNSGVSIKLVDEREDN------KQDHFMYEGGIQAFVNHLNRN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  ++F   +E++     +VE A+ W +     I  + N I   +GGTH +G R AL
Sbjct: 233 KTPIHEKVFHFNSERED--GISVEVAMQWNDGFQESIYCFTNNIPQRDGGTHLAGFRAAL 290

Query: 339 TRGIKKYAE--LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNTYMDKECYTKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+A+ +  + +L +NP EA  +   +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 351 ESAMGEKLNDFLAENPSEAKIVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  DEE   + 
Sbjct: 531 AQPPLYKVKKGKQEQYIKDEEAMNQY 556



 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G ++            L+   K  +  + + R+KGLGEM   QL ET MD   R ++
Sbjct: 708 IKRGERTQ---PVASFAAALDWLIKESRRGLSVQRYKGLGEMNPDQLWETTMDPETRRMM 764

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I+  +       +    LMG + + R  FI+  A  + ++ 
Sbjct: 765 QVTIDDAVG----ADELFTTLMGDQVEPRRAFIENNALKVANLD 804


>gi|297539210|ref|YP_003674979.1| DNA topoisomerase [Methylotenera sp. 301]
 gi|297258557|gb|ADI30402.1| DNA topoisomerase (ATP-hydrolyzing) [Methylotenera sp. 301]
          Length = 661

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 239/671 (35%), Positives = 351/671 (52%), Gaps = 42/671 (6%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A   YDA S+++L GLEPVR RPGMY   T  ++  H+  EVIDNA DE + G+A  I+V
Sbjct: 2   AEKEYDADSVKVLRGLEPVRARPGMY---TRTESPTHIVQEVIDNAADEALGGHATTIQV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD----NSTYEISGGLH 155
           ++  +G + V DNGRGIPVE  PK   +  +E++   LHAGGKFD    NS+Y  SGGLH
Sbjct: 59  TIFKDGAVEVSDNGRGIPVEI-PKGETQPAVELVFVQLHAGGKFDKEDENSSYRFSGGLH 117

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPK 214
           GVG+SV NALS  L VTV R   + S  F  G  ++PL +  K  +   GT +   PDPK
Sbjct: 118 GVGVSVTNALSTRLDVTVKRDGKVHSLSFENGNCVTPLTETGKCLKKDTGTTVKCWPDPK 177

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
            F         +L  + +SKA L   V    S      E     E+  + +  GL  YL 
Sbjct: 178 YFDS-PKVSLQQLEHLIKSKAVLLRGVSVTLS-----IEGNDGFEERSWTYVDGLPQYLD 231

Query: 275 TKLENRSLISSEI--------FTGKTEKKGTHRGT-VEWAIAWCEENPEITSYCNTILTD 325
             +  R     E         F       G  +G    WA+++        SY N I T 
Sbjct: 232 ELIGEREYEDDETPIPIISGEFYHHENTDGISKGEGAIWALSFGSGGGRGESYVNLIPTL 291

Query: 326 EGGTHESGLRVALTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
            GGTHE+G+R  +   +K + E     +R + + S+D+  +   +L+  + +P+F GQTK
Sbjct: 292 SGGTHEAGMRNGVFEAVKSFMEHHSMMQRGVKVSSEDVWNNVCYVLAAKVLDPQFQGQTK 351

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI 444
            KL + DA + V +A++   + +L QN   A ++ + V   +  R +  ++ E  + + I
Sbjct: 352 EKLTNRDAMKMVASAVKPYMETWLSQNVDHAKRISDLVNRSAAARNKSTQKIEKRKSSGI 411

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               +P KL DC        ELF+VEGDSAGGSAK  RN   Q++LPLRGK+LN     +
Sbjct: 412 N--LMPAKLTDCEAAGTMEAELFLVEGDSAGGSAKMGRNNEFQSLLPLRGKVLNTWEVDA 469

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
            +I  N ++ D+  ALG    +     D   LRY K+ I++DADVDG+HI  LLLT   +
Sbjct: 470 GRIFGNSEVHDIFVALGIEPHTLKDNPDFSGLRYGKLCILSDADVDGSHIQVLLLTMLLR 529

Query: 562 EMYDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHG--KGKI 612
               LIE+ H+++  PPL+RI    QG     + +Y  D+  K   +E+ K+ G  + K+
Sbjct: 530 HAPKLIERGHVYISQPPLYRIDVPAQGKSKPLRKIYVSDDSEKMSTIEKLKREGIAEEKL 589

Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERF 671
            I RFKGLGEM   QL ET +  + R L++V + +   +        + LM    +  R 
Sbjct: 590 GIQRFKGLGEMNPEQLWETTLCPDTRRLVQVRLPEGEVAGAL--KMFDMLMAKNESAARK 647

Query: 672 KFIQERASFID 682
           ++I+ R + ++
Sbjct: 648 EWIERRGNDVE 658


>gi|241759917|ref|ZP_04758017.1| DNA topoisomerase IV, B subunit [Neisseria flavescens SK114]
 gi|241319925|gb|EER56321.1| DNA topoisomerase IV, B subunit [Neisseria flavescens SK114]
          Length = 674

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 243/672 (36%), Positives = 351/672 (52%), Gaps = 38/672 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ Y  SSI +L+GLEPV+ RPGMY   T   +  H+  EVIDNA DE + G+A  I+
Sbjct: 15  TKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATEID 71

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154
           V +  +G L+V DNGRGIPV  HP       +E++ T LHAGGKF+       Y  SGGL
Sbjct: 72  VRIHDDGSLSVHDNGRGIPVGLHP-VEGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 130

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213
           HGVG+SV NALS  L VTV R+  I    F+ G  + PL +  K      GT +   PD 
Sbjct: 131 HGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAEVGKCAVKDSGTEVRVWPDG 190

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     +    L ++ ++KA L   V+   +      +       + +++P GLK+YL
Sbjct: 191 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEAHTQTWHYPDGLKSYL 246

Query: 274 QTKLENRS-----LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEG 327
              + +              +       +      +A+ W EE      SY N I T  G
Sbjct: 247 TDLIADAQEAVPLFSCENYISDDHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 306

Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           GTHE+GL+ A+   +  +  L     R + + SDD+      +LS  + +P+F GQTK K
Sbjct: 307 GTHEAGLKQAVFNAVSNFINLHNLLPRGVKVQSDDVFGKTAFVLSARVLDPQFQGQTKDK 366

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L + DA + V     DP + +L QN     K+ E  I +++ R+R    +++ +K     
Sbjct: 367 LTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSV--KKIEKKKGSGV 424

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKL DC        ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN      ++
Sbjct: 425 AVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 484

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +  N +I D+  A+G          D   LRY K+ I++DADVDG+HI  LLLT FY+  
Sbjct: 485 LFGNAEIHDISVAIGVDPHGINDNPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 544

Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614
             L+   H+++  PPLFR+    QG     +  YA D+     ILE  +K G  +    I
Sbjct: 545 PKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDSILERLQKEGVKETAYSI 604

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673
           SRFKGLGEM   QLK+T M  + R LL+V+I +  +   +T D   KLMG  +A  R  +
Sbjct: 605 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETHDIFVKLMGKGEAAARRAW 662

Query: 674 IQERASFIDDVG 685
           +++     + + 
Sbjct: 663 MEKEGDTAE-LD 673


>gi|238063681|ref|ZP_04608390.1| DNA gyrase subunit B gyrB [Micromonospora sp. ATCC 39149]
 gi|237885492|gb|EEP74320.1| DNA gyrase subunit B gyrB [Micromonospora sp. ATCC 39149]
          Length = 703

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 224/681 (32%), Positives = 336/681 (49%), Gaps = 52/681 (7%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y A  +  LEGL+ VR RPGMYIG TD + + HL +E++DN+ DE +AG+A  IEV L  
Sbjct: 27  YGADDLTHLEGLDAVRKRPGMYIGSTDSRGVGHLVNEILDNSTDEGVAGHATRIEVILHA 86

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G + V D+GRGIP + H K    S +E++LT LHAGGKF  S Y+ SGGLHGVG S VN
Sbjct: 87  DGSVQVDDDGRGIPTDVHAK-SGISGVELVLTRLHAGGKFGGSGYKTSGGLHGVGASAVN 145

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV----------------RNKRGTRI 207
           ALS    VTV R   + +  F  G+P +                          + GT I
Sbjct: 146 ALSRRFDVTVRRGGKVHAMSFQHGVPGAFAGPGPDAAFTPGPGLQIVGAMKRGQRTGTSI 205

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            +  D + F   A  DA  +    ++ A+L   V                P +E F+FP 
Sbjct: 206 RYWHDARYFETGASLDAEAVRLKLRNTAFLVPGVSYLLRD-----HTGEEPVEETFHFPN 260

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTE---------------KKGTHRGTVEWAIAWCEEN 312
           GL   ++          S       E                    R  VE A  W    
Sbjct: 261 GLTDMVEFLAPAGDRPVSGTLLVTGEGTYRENAADANGVMQSNVQRRAEVEIAFRWGTGY 320

Query: 313 PEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ---NKRAISIISDDLMISAVG 368
                 + NTI    GGTH  G   AL R +   A   +     +  +   DD++     
Sbjct: 321 ERTVECFTNTIRNAHGGTHRKGFERALARALADAARAARGLLRPKEDAPTLDDVLEGMTA 380

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL--VQNPIEATKLLEWVIERS 426
           ++ V I EP+F  QTK +L +    + ++  +      +L   +   EA  +L+ +++ +
Sbjct: 381 VVHVRIPEPQFTSQTKDELSTAGITKVLQGLVEAHVKAWLEDRRTKAEARTVLQKIVDAA 440

Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
             RL +++Q++   RKTA+    +P KL DC  +    +ELFIVEGDSA G+ + AR+  
Sbjct: 441 RVRLTQKQQKDAARRKTALEGASMPAKLVDCRASGIDRSELFIVEGDSALGTGRLARSAE 500

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545
            QA+LP+RGKILNV  A  +++ +N +   +VQ LG  +   +    +RY +V+IM DAD
Sbjct: 501 YQALLPIRGKILNVQKANLQQVLDNAECAAIVQVLGAGSGRTFDLASMRYGRVLIMADAD 560

Query: 546 VDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT---QGTKSVYAHDEEHKQKILE 602
           VDGAHI +LL+T F + M  LIE   L+   PPL +IT   +  +++Y + +   +  + 
Sbjct: 561 VDGAHIRTLLITLFARYMRPLIEAGRLYAAMPPLHKITTRGRNPQTIYTYTQAEMEATVR 620

Query: 603 EFKKHGKGKIE-ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
           + +K G+  +  I RFKGLGEM A +L ET M+   R + R+ ++     +   +  +  
Sbjct: 621 KLEKAGRQIVTPIPRFKGLGEMDADELWETTMNPATRAVRRITLDD----VDAAERILEL 676

Query: 662 LMGTKADERFKFIQERASFID 682
           LMG K + R  ++ E A  +D
Sbjct: 677 LMGEKVEPRRNWLIESADRVD 697


>gi|83719101|ref|YP_441494.1| DNA topoisomerase IV subunit B [Burkholderia thailandensis E264]
 gi|167580262|ref|ZP_02373136.1| DNA topoisomerase IV subunit B [Burkholderia thailandensis TXDOH]
 gi|167618385|ref|ZP_02387016.1| DNA topoisomerase IV subunit B [Burkholderia thailandensis Bt4]
 gi|257139822|ref|ZP_05588084.1| DNA topoisomerase IV subunit B [Burkholderia thailandensis E264]
 gi|83652926|gb|ABC36989.1| DNA topoisomerase IV, subunit B [Burkholderia thailandensis E264]
          Length = 660

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 242/673 (35%), Positives = 359/673 (53%), Gaps = 41/673 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +  +  Y  +SI++L+GLEPV+ RPGMY   T  +   H+  EVIDNA DE + G+ 
Sbjct: 1   MSTKKPAAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGFG 57

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151
             I V+L  +  ++V D+GRGIP   HP+      +EI+ T LHAGGKFD      Y  S
Sbjct: 58  KQITVTLHPDQSVSVEDDGRGIPFGLHPE-EKVPVVEIVFTRLHAGGKFDKAKGGAYTFS 116

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITF 209
           GGLHGVG+SV NAL+  L VTV R   I    F+ G  + PL  +   R   K GTR+T 
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKIAQLGFADGDVVKPLATQGAGRGEKKSGTRVTV 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P+PK F          L ++ +SKA L   V+     +K         E++ + +  GL
Sbjct: 177 WPNPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVVLVNEK-------TGERQSWKYEDGL 228

Query: 270 KTYLQTKLENRSLISSEI------FTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTI 322
           + YL  ++    L+           +   +          W +AW EE      SY N I
Sbjct: 229 RGYLLDEMNGSELLIPLFEGERFADSRSGDDTFAEGEGASWVVAWSEEGSLVRESYVNLI 288

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAG 381
            T  GGTHESGLR  L + +K + EL     + + ++++D+      +LS  + +P+F G
Sbjct: 289 PTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQG 348

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           Q K +L S DA + V +  R   + +L Q+     KL E VI++++ R R  ++ E  + 
Sbjct: 349 QIKERLNSRDAVKLVSSFTRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKIEKKKS 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +  L  PGKL DC        ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN   
Sbjct: 409 SGVAVL--PGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWE 466

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQY---REEDLRYEKVIIMTDADVDGAHIASLLLTF 558
              +++  N ++ D+  A+G             +LRY K+ I++DADVDGAHI  LLLT 
Sbjct: 467 TERDRLFANNEVHDISVAIGVDPHGPDDSVDVSNLRYGKICILSDADVDGAHIQVLLLTL 526

Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KG 610
           F++    LIE+ H+F+  PPLFR+    +G K    +YA DE   + IL++ +K G  + 
Sbjct: 527 FFKHFPQLIERGHVFVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDGVRES 586

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669
           +  ISRFKGLGEM A QL +T M+ + R L+ V +       + T   +  LMG  +A  
Sbjct: 587 QWTISRFKGLGEMSAEQLWDTTMNPDTRRLMPVAL--GELDFEATVARMTMLMGKGEAAA 644

Query: 670 RFKFIQERASFID 682
           R  +++E+ + ++
Sbjct: 645 RRNWLEEKGNEVE 657


>gi|257464605|ref|ZP_05628976.1| DNA gyrase subunit B [Actinobacillus minor 202]
 gi|257450265|gb|EEV24308.1| DNA gyrase subunit B [Actinobacillus minor 202]
          Length = 809

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 237/582 (40%), Positives = 351/582 (60%), Gaps = 20/582 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           ++    +YD+SSI++L GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY  
Sbjct: 2   SEQNQQSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCQ 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V D+GRGIPV  HP+    S  E+I+T LHAGGKFD+++Y++SGGLH
Sbjct: 62  DIVVTIHSDNSVSVQDDGRGIPVGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS +L +T+ R+  +  Q +S G P +PL       +K GT + F P   I
Sbjct: 121 GVGVSVVNALSSKLQLTIRREGHVHEQFYSLGEPNAPLTVIGNT-DKTGTMVRFWPSLDI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +K  F+   L K  +  ++L+  V      +++  E       E F + GG+K Y++ 
Sbjct: 180 FKNKTEFEYKILSKRLRELSFLNSGVSIRLVDERDGKE-------EHFKYEGGIKAYVEY 232

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             E ++ I +  F   TEK G     VE ++ W +     +  + N I   +GGTH +G 
Sbjct: 233 LNEGKTHIHNTPFYLSTEKDGI---GVEVSLQWNDSYNENVYCFTNNIPQRDGGTHLAGF 289

Query: 335 RVALTRGIKKYAELTQNKR----AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           R ALTR +K Y + +   +     I    DD     V ++SV + +P+F+ QTK KLVS 
Sbjct: 290 RAALTRALKNYMDNSGVLKKADANIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLVSS 349

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRL 449
           + +  VE+++ +    YL +NP +A  ++  +I+ +  R   RK R    RK A+    L
Sbjct: 350 EVRGAVESSMNEALAEYLAENPDDAKNIVSKIIDAARAREAARKAREMTRRKGALDLGGL 409

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +EL++VEGDSAGGSAKQ R+R NQA+LPL+GKILNV  A  +K+ +
Sbjct: 410 PGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLS 469

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q++  L+ ALG    R  Y  E LRY K+IIMTDADVDGAHI +LLLTFFY++M +LIE
Sbjct: 470 SQEVATLITALGTGIGREDYNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELIE 529

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
             ++++  PPL+++ +G +  Y  D +   +   +    G G
Sbjct: 530 NGYIYIAQPPLYKVKKGKQERYIQDNDEMSQYEIDIALEGAG 571



 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 5/89 (5%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
             + L+   K  +  + I R+KGLGEM   QL ET MD   R +L+V I   +       
Sbjct: 725 FAEALDWLVKESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNITDAI----AAD 780

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
              + LMG + + R  FI+  A +   + 
Sbjct: 781 KLFSTLMGDEVEPRRDFIESNALYA-QLD 808


>gi|262370827|ref|ZP_06064151.1| topoisomerase IV subunit B [Acinetobacter johnsonii SH046]
 gi|262314189|gb|EEY95232.1| topoisomerase IV subunit B [Acinetobacter johnsonii SH046]
          Length = 626

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 247/646 (38%), Positives = 373/646 (57%), Gaps = 29/646 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y A S+ +L GL+PVR RPGMY   TD    +HL  EVIDNA+DE +AG+AN I V++
Sbjct: 2   SQYTAQSLEVLSGLDPVRRRPGMY---TDTTRPNHLAQEVIDNAVDEALAGHANKITVTV 58

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G L+V DNGRG+PV+ HP++  +S +EIILT LHAGGKF    Y+ SGGLHGVGISV
Sbjct: 59  YKDGSLSVEDNGRGMPVDIHPEY-GQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISV 117

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGDK 219
           VNALS  + V V RQ  ++   F  G P +PL   E    +   GT + F P+ K F   
Sbjct: 118 VNALSSRVEVEVQRQGNLYQMAFEHGEPTAPLVVLEGKAPKRATGTTVHFWPEAKYFDSP 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L    ++KA L+  ++  +             EK  + F  GL  YL  ++E+
Sbjct: 178 -KFALKALKHNLKAKAVLAAGLQINYVDQ-------INDEKIVWQFENGLVDYLMDEIED 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
           R ++    F    + +   R + E+AI W  +  E    SY N I T +GGTH +GLR  
Sbjct: 230 REILPHPAFVATGDAE---RASAEFAICWNVDGGELVQESYVNLIPTAQGGTHVNGLRSG 286

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           +T  ++++ EL     R + + ++D+      ILS+  +EP+F+GQTK +L S +A   V
Sbjct: 287 VTDAMREFCELRNLLPRNMKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREASGIV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +N  +D F  +L QN   A +L E  I ++  RL+    ++V RK  +    LPGKL+DC
Sbjct: 347 QNIAKDAFALWLNQNSDIAMQLAEMAISKAGRRLK--AAKKVERKKIVAGPTLPGKLSDC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
             +    +ELFIVEGDSAGGSAKQAR+++ QA++P+RGKILN     S+++  +Q++ ++
Sbjct: 405 VGHTLEESELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHNI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    S     +LRY K+ I+ DAD DG HIA+LL   F +    L+E+ HL++  
Sbjct: 465 AIAIGVDPGSDDL-SELRYGKICILADADSDGLHIATLLCALFVKHFPILVEEGHLYVAM 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+RI       YA D++  + +L++ K       +I+RFKGLGEM ASQL+ET +D N
Sbjct: 524 PPLYRIDDAKDVHYALDDDELESMLKKCK---TKNPQITRFKGLGEMNASQLRETTLDPN 580

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            R L++++++    +          L   ++ +R ++++++ +  +
Sbjct: 581 TRRLVQLDLDDSHFTAGLLDKL---LAKKRSSDRKEWLEQKGNLAE 623


>gi|167856132|ref|ZP_02478872.1| DNA gyrase subunit B [Haemophilus parasuis 29755]
 gi|167852728|gb|EDS24002.1| DNA gyrase subunit B [Haemophilus parasuis 29755]
          Length = 810

 Score =  515 bits (1326), Expect = e-144,   Method: Composition-based stats.
 Identities = 235/586 (40%), Positives = 352/586 (60%), Gaps = 20/586 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
            + Q+  ++YD+SSI++L GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY
Sbjct: 1   MSEQNQPNSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGY 60

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
            N I V++  +  ++V D+GRGIPV  HP+    S  E+I+T LHAGGKFD+++Y++SGG
Sbjct: 61  CNDIVVTIHSDNSVSVQDDGRGIPVGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGG 119

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS +L +T+ R+  +  Q +S G P +PL    +     GT + F P  
Sbjct: 120 LHGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGDPDAPLAVIGETEK-TGTTVRFWPSY 178

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF +K  F+ A L K  +  ++L+  V      ++   E       E F + GG++ Y+
Sbjct: 179 DIFKNKTEFEYAILSKRLRELSFLNSGVSIRLVDERNDKE-------EHFKYEGGIRAYV 231

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   E +++I    F   TEK       +E ++ W +     +  + N I   +GGTH +
Sbjct: 232 EYLNEGKNVIHPTPFYLSTEKDDI---GIEISMQWNDSFNENVYCFTNNIPQRDGGTHLA 288

Query: 333 GLRVALTRGIKKYAELTQNKRA----ISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           G R ALTR +K Y E     +     I    DD     V ++SV + +P+F+ QTK KLV
Sbjct: 289 GFRGALTRALKNYMETGAKLKKEDAKIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLV 348

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447
           S + +  +E+++ +    YL++NP +A  ++  +I+ +  R   RK R    RK A+   
Sbjct: 349 SSEVRNPLESSMNEALQEYLLENPNDAQNIVTKIIDAARAREAARKAREMTRRKGALDLG 408

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +EL++VEGDSAGGSAKQ R+R NQA+LPL+GKILNV  A  +K+
Sbjct: 409 GLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKM 468

Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
            ++Q++  L+ ALG    R +Y  E LRY K+IIMTDADVDGAHI +LLLTFFY++M +L
Sbjct: 469 LSSQEVATLITALGAGIGRDEYNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPEL 528

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612
           IE+ ++++  PPL+++ +G +  Y  D    ++        G    
Sbjct: 529 IERGYVYIAQPPLYKVKKGKQEKYIQDNTEMEQYELALALDGASLY 574



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 8/104 (7%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G +             ++   K  +  + I R+KGLGEM   QL ET MD   R +L
Sbjct: 714 VQRGERQQSIESVAE---AIDWLVKESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKML 770

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R  FI+  A +  ++ 
Sbjct: 771 QVTITDAI----AADKLFTTLMGDEVEPRRDFIENNALYA-NLD 809


>gi|78067168|ref|YP_369937.1| DNA topoisomerase IV subunit B [Burkholderia sp. 383]
 gi|77967913|gb|ABB09293.1| DNA topoisomerase IV subunit B [Burkholderia sp. 383]
          Length = 660

 Score =  515 bits (1326), Expect = e-144,   Method: Composition-based stats.
 Identities = 241/673 (35%), Positives = 359/673 (53%), Gaps = 41/673 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +  S  Y  +SI++L+GLEPV+ RPGMY   T  +   H+  EVIDNA DE + GY 
Sbjct: 1   MSTKKPSAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYG 57

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151
             I V+L  +  ++V D+GRGIP   HP+      +EI+ T LHAGGKFD      Y  S
Sbjct: 58  KQITVTLHADQSVSVEDDGRGIPFGMHPE-EGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITF 209
           GGLHGVG+SV NAL+  L VTV R   I    F+ G  + PL  +   R   K GTR+  
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKIAELGFAEGDVVKPLATQGAGRGEKKSGTRVQV 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P+PK F          L ++ +SKA L   V+     +K         E++ + +  GL
Sbjct: 177 WPNPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVVLVNEKS-------GERQTWKYEDGL 228

Query: 270 KTYLQTKLENRSLISSEI------FTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTI 322
           + YL  ++    L+           +   +          W +AW EE      SY N I
Sbjct: 229 RGYLLDEMNGSELLIPLFEGERFADSRSGDDTFAEGEGASWVVAWSEEGSLVRESYVNLI 288

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAG 381
            T  GGTHESGLR  L + +K + EL     + + ++++D+      +LS  + +P+F G
Sbjct: 289 PTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQG 348

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           Q K +L S DA + V +  R   + +L Q+     KL E VI++++ R R  ++ E  + 
Sbjct: 349 QIKERLNSRDAVKLVSSFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKVEKRKS 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +  L  PGKL DC        ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN   
Sbjct: 409 SGVAVL--PGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWE 466

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLLTF 558
              +++  N ++ D+  A+G    S        +LRY K+ I++DADVDG+HI  LLLT 
Sbjct: 467 TERDRLFANNEVHDISVAIGVDPHSPDESVDLSNLRYGKICILSDADVDGSHIQVLLLTL 526

Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KG 610
           F++    LIE+ H+ +  PPLFR+    +G K    +YA D+   + IL++ +K G  + 
Sbjct: 527 FFKHFPQLIERGHVCVARPPLFRVDAPARGKKAAQKLYALDDGELEAILDKLRKDGVRET 586

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669
           +  ISRFKGLGEM A QL +T M+ + R L+ V++       + T   +  LMG  +A  
Sbjct: 587 QWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKL--GELDYEATVARMTMLMGKGEAAA 644

Query: 670 RFKFIQERASFID 682
           R  +++E+ + ++
Sbjct: 645 RRGWLEEKGNDVE 657


>gi|83950587|ref|ZP_00959320.1| DNA gyrase subunit B [Roseovarius nubinhibens ISM]
 gi|83838486|gb|EAP77782.1| DNA gyrase subunit B [Roseovarius nubinhibens ISM]
          Length = 805

 Score =  515 bits (1326), Expect = e-144,   Method: Composition-based stats.
 Identities = 224/580 (38%), Positives = 338/580 (58%), Gaps = 16/580 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
               +A + Y A SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DN +DE +AG+
Sbjct: 2   SEAAAAPEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGH 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ + V++  +  ++V DNGRGIPV+ H +    S  E+I+T LHAGGKFD+++Y++SGG
Sbjct: 62  ADHVTVTIHDDSSVSVSDNGRGIPVDLHEE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALSD L + + R       +F RG     L+       ++GT + F    
Sbjct: 121 LHGVGVSVVNALSDWLELRIWRNGKEHVARFERGDTAEHLKVVGDANGRKGTEVRFLAST 180

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
             F +   +    L +  +  A+L+  V+     ++        P + E ++ GG+K ++
Sbjct: 181 DTFSNL-EYSFETLERRLRELAFLNSGVRIILRDER-----PAEPLETELHYDGGVKEFV 234

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +    ++S +  E      E+       VE A+ W +     +  + N I   +GGTH +
Sbjct: 235 KYLDRHKSPMIPEPIFITGERDEI---GVEVAMWWNDSYHETVLPFTNNIPQRDGGTHMA 291

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR I  YA+ +    K  ++   DD       +LSV + +P+F+ QTK KLVS 
Sbjct: 292 GFRGALTRTINNYAQSSGIAKKEKVNFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 351

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           + +  VE  + +  + +  +NP EA  ++  +IE +  R   RK RE   RKTA+    L
Sbjct: 352 EVRPAVEGLMNEKLNEWFEENPNEAKMIVGKIIEAALAREAARKARELTRRKTAMDVNFL 411

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
            GKL DCS+     TELF+VEGDSAGGSA+  R+R  QA+LPL+GKILNV  A  +++  
Sbjct: 412 AGKLKDCSEKDPSKTELFLVEGDSAGGSAQTGRDRGTQAILPLKGKILNVERARFDRMLG 471

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q+I +LV ALG    R ++  + LRY K++IMTDADVDGAHI +LLLTFFY++M +LI+
Sbjct: 472 SQEIGNLVMALGTGIGRDEFNIDKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELID 531

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             +L++  PPL+++++G   VY  D+   +  L E     
Sbjct: 532 GGYLYIAQPPLYKVSRGKSEVYLKDQAAMEDYLIEQGTDD 571



 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L+   K G+  + + R+KGLGEM   QL ET +D   RTLL+V++N     + +  D 
Sbjct: 722 DLLDAILKEGEKGLSLQRYKGLGEMNPDQLWETTLDPEARTLLQVKVND----VAEADDL 777

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R +FIQE A  ++++ 
Sbjct: 778 FTKLMGDVVEPRREFIQENALNVENLD 804


>gi|254461194|ref|ZP_05074610.1| DNA gyrase, B subunit [Rhodobacterales bacterium HTCC2083]
 gi|206677783|gb|EDZ42270.1| DNA gyrase, B subunit [Rhodobacteraceae bacterium HTCC2083]
          Length = 805

 Score =  515 bits (1326), Expect = e-144,   Method: Composition-based stats.
 Identities = 229/580 (39%), Positives = 334/580 (57%), Gaps = 16/580 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
              +  +  Y A SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DN +DE +AG+
Sbjct: 2   SETEQNNAEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGH 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ + V +  +  ++V DNGRGIPV  H +    S  E+I+T LHAGGKFD+++Y++SGG
Sbjct: 62  ADAVNVKIHADSSVSVSDNGRGIPVGIHEE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS+ L + + R       +F  G     L+       + GT + F    
Sbjct: 121 LHGVGVSVVNALSNWLELRIWRDGKEHVARFEHGDTAEHLKVVGDAGERTGTEVRFLASL 180

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
             F +   +    L K  +  A+L+  V+     ++        P + E Y+ GG+K ++
Sbjct: 181 DTFSNL-EYVFDTLEKRLRELAFLNSGVRIILEDER-----PAEPLRTELYYDGGVKEFV 234

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHES 332
           +    ++S I  E      EK       VE A+ W +   E    + N I   +GGTH +
Sbjct: 235 KYLDRSKSSIMPEPVYMIGEKDDI---GVEVAMWWNDSYHENVLPFTNNIPQRDGGTHMA 291

Query: 333 GLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR I  YA  +   +   ++   DD       +LSV + +P+F+ QTK KLVS 
Sbjct: 292 GFRGALTRTINNYAASSGIAKREKVNFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 351

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           + +  VE+ + +    +  +NP EA  ++  +IE +  R   RK RE   RKTA+    L
Sbjct: 352 EVRPAVESLVNEKLAEWFEENPNEAKIIVGKIIEAAHAREAARKARELTRRKTAMDVNYL 411

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
            GKL DCS+     TE+F+VEGDSAGGSA+  R+R  QA+LPL+GKILNV  A  +K+ N
Sbjct: 412 AGKLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDKMLN 471

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q+I +LV ALG    R ++  E LRY K++IMTDADVDGAHI +LLLTFFY++M +LIE
Sbjct: 472 SQEIGNLVMALGTGIGRDEFNIEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIE 531

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             +L++  PPL+++++G   VY  D+    + L E    G
Sbjct: 532 GGYLYIAQPPLYKVSRGKSEVYLKDQAEMDEYLIEQGIDG 571



 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L    + G+  + + R+KGLGEM   QL ET +D + RTLL+V+IN     + +  D 
Sbjct: 722 DLLSAILQEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVKIND----VAEADDL 777

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R +FIQ+ A  ++++ 
Sbjct: 778 FTKLMGDIVEPRREFIQQNALNVENLD 804


>gi|312882232|ref|ZP_07741978.1| DNA gyrase subunit B [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370076|gb|EFP97582.1| DNA gyrase subunit B [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 805

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 233/566 (41%), Positives = 347/566 (61%), Gaps = 17/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I V
Sbjct: 2   SENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP E HP+  N S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDNSVSVRDDGRGIPTEMHPE-ENVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+++ +T+ R   I SQ +  G P +PL      +N  GT I F P  + F + 
Sbjct: 121 SVVNALSEKVVLTIHRGGNIHSQTYHHGEPQAPLAVLGDTQN-TGTEIRFWPSAETFSNT 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V      ++E        + + F F GG++ ++     N
Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLIDEREDD------KSDHFMFEGGIQAFVDHLNTN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  +IF    E++     +VE A+ W +     I  + N I   +GGTH +G R AL
Sbjct: 233 KTPIIDKIFHFDFERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAL 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+A+ +    +LV+NP EA  +   +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 351 ESAMGEKLAEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  DE+     
Sbjct: 531 AQPPLYKVKKGKQERYIKDEDAMNDY 556



 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G ++          + LE   K  +  + + R+KGLGEM   QL ET MD   R ++
Sbjct: 708 IKRGERTQ---PVASFVEALEWLMKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMM 764

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R  FI+E A  + ++ 
Sbjct: 765 QVTIEDAVG----ADQLFTTLMGDQVEPRRNFIEENALKVANLD 804


>gi|148262089|ref|YP_001228795.1| DNA gyrase, B subunit [Geobacter uraniireducens Rf4]
 gi|146395589|gb|ABQ24222.1| DNA gyrase subunit B [Geobacter uraniireducens Rf4]
          Length = 794

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 236/579 (40%), Positives = 350/579 (60%), Gaps = 18/579 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            ++ + S +Y A  I++LEGL  VR RP MYIG T  + LHHL  E++DN++DE +AG+ 
Sbjct: 1   MSDDTTSKDYGADKIKVLEGLSAVRKRPAMYIGSTSVQGLHHLVYEIVDNSIDEALAGHC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I V+++ +G +TVVDNGRGIP + HP    KS  E++LT LHAGGKFDNS+Y++SGGL
Sbjct: 61  DDILVTINVDGSVTVVDNGRGIPTDMHP-TEGKSAAEVVLTVLHAGGKFDNSSYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS +L + + R   +F Q +  G P  PLE   + +  RGT+ITF PD +
Sbjct: 120 HGVGVSVVNALSKKLELEIRRDGKLFRQSYRCGDPQGPLEVVGETKK-RGTKITFFPDDE 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     F    L +  +  A+L+  V+     ++         +  EF++ GG+ ++++
Sbjct: 179 IFET-TEFSFDTLSQRLREMAFLNAGVRIKIVDER-------TEKVHEFFYEGGINSFVE 230

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  +      EK G     +E A+ + +    +I ++ N I T EGGTH  G
Sbjct: 231 YLNKNKTPIHPKPIYISGEKGGV---EMEIAMQYNDSYDEKIFTFANNINTHEGGTHLIG 287

Query: 334 LRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            + ALTR +  YA      + +  +I  +DL      ++SV I +P+F GQTKTKL + +
Sbjct: 288 FKAALTRTMNTYANANNLLKNVKENISGEDLREGLTSVISVKIPQPQFEGQTKTKLGNSE 347

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE  + +    YL +NP  A ++LE  I+ +  R   R+ R+   RK A+    LP
Sbjct: 348 VKGYVETLMNEKLATYLEENPQIAKRILEKSIDAARAREAARRARDLTRRKGALEVGTLP 407

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +      ELF+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++
Sbjct: 408 GKLADCQEKDPALCELFLVEGDSAGGSAKQGRDRKYQAILPLKGKILNVEKARFDKMLSS 467

Query: 511 QQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           Q+I  L+ ALG    +  +    LRY ++IIMTDADVDG+HI +LLLTFF+++M ++IE+
Sbjct: 468 QEIRTLIAALGTSIGKGDFDIAKLRYHRIIIMTDADVDGSHILTLLLTFFFRQMLEMIER 527

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
            +L++  PPL++I +G K  Y  +E   Q  L E     
Sbjct: 528 GYLYIAQPPLYKIKRGRKEQYLKNEAALQNYLLEEGTED 566



 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 4/106 (3%)

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
            + T  T+     + E  +++L  F +  K  + I R+KGLGEM   QL ET M    R 
Sbjct: 692 VKATVSTEEKQLFESESHEELLAFFFETAKKGLYIQRYKGLGEMNPEQLWETTMHPENRV 751

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           LL+V+I   +    + ++    LMG + + R +FI++ A  + ++ 
Sbjct: 752 LLQVKIEDIV----EAEEIFTVLMGDQVEPRREFIEQNALNVSNLD 793


>gi|163802136|ref|ZP_02196031.1| DNA gyrase subunit B [Vibrio sp. AND4]
 gi|159173941|gb|EDP58751.1| DNA gyrase subunit B [Vibrio sp. AND4]
          Length = 805

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 226/566 (39%), Positives = 346/566 (61%), Gaps = 17/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I V
Sbjct: 2   SENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP E H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDNSVSVTDDGRGIPTEMHSE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+++ +T+ R     +Q +  G P +PL       ++ GT+I F P  + F + 
Sbjct: 121 SVVNALSEKVVLTIHRGGHTHTQTYHHGDPQAPLAVVGDT-DQTGTQIRFWPSAETFTNI 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V      ++E        + + F + GG++ +++    N
Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLVDERE------EDKSDHFMYEGGIQAFVEHLNTN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  +IF    E++      VE A+ W +     I  + N I   +GGTH +G R AL
Sbjct: 233 KTPIVEKIFHFDFERED--GIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAL 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+A+ +    +L++NP EA  +   +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 351 ESAMGEKLSEFLIENPAEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  DE+   + 
Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMTQY 556



 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G ++            LE   K  +  + + R+KGLGEM   QL ET MD   R ++
Sbjct: 708 IKRGERTQPVTS---FASALEWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMM 764

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R  FI+E A  + ++ 
Sbjct: 765 QVTIEDAVG----ADQLFTTLMGDQVEPRRNFIEENALKVANLD 804


>gi|261494473|ref|ZP_05990959.1| DNA gyrase subunit B [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261309857|gb|EEY11074.1| DNA gyrase subunit B [Mannheimia haemolytica serotype A2 str.
           OVINE]
          Length = 810

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 234/586 (39%), Positives = 349/586 (59%), Gaps = 20/586 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
            + Q+ + +YD+SSI++L GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+
Sbjct: 1   MSEQTQATSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 60

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
              I V++  +  ++V D+GRGIPV  HP+    S  E+I+T LHAGGKFD+++Y++SGG
Sbjct: 61  CKDIIVTIHSDNSVSVQDDGRGIPVGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGG 119

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS +L +T+ R+  +  Q +S G P +PL          GT + F P  
Sbjct: 120 LHGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGEPDAPLAIIGNTEK-TGTSVRFWPSL 178

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF +K  F+   L K  +  ++L+  V      +++  E       E F + GG+K Y+
Sbjct: 179 DIFKNKTEFEYKILSKRLRELSFLNSGVSIKLIDERDGKE-------EHFKYEGGIKAYV 231

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   E ++ I +  F   TEK G     VE ++ W +     +  + N I   +GGTH +
Sbjct: 232 EYLNEGKTHIHNTPFYLTTEKDGI---GVEISLLWNDSYNENVYCFTNNIPQRDGGTHLA 288

Query: 333 GLRVALTRGIKKYAELTQNKR----AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           G R ALTR +K Y + +   +     I    DD     V ++SV + +P+F+ QTK KLV
Sbjct: 289 GFRGALTRALKNYMDNSGVLKKADANIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLV 348

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447
           S + +  VE+++ +    YL +NP +A  ++  +I+ +  R   RK R    RK A+   
Sbjct: 349 SSEVRGAVESSMNEALSDYLAENPDDAKNIVTKIIDAARAREAARKAREMTRRKGALDLG 408

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +EL++VEGDSAGGSAKQ R+R NQA+LPL+GKILNV  A  +K+
Sbjct: 409 GLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKM 468

Query: 508 RNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
            ++Q++  L+ ALG          E LRY K+IIMTDADVDGAHI +LLLTFFY++M +L
Sbjct: 469 LSSQEVATLITALGTGIGRDDYNLEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPEL 528

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612
           IE  ++++  PPL+++ +G +  Y  D +   +   +    G G  
Sbjct: 529 IENGYIYIAQPPLYKVKKGKQERYIQDNDEMSQYEIDIALEGAGLY 574



 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 5/89 (5%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
             + L+   K  +  + I R+KGLGEM   QL ET MD   R +L+V I   +       
Sbjct: 726 FAEALDWLVKESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNITDAI----AAD 781

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
              + LMG + + R  FI+  A +   + 
Sbjct: 782 KLFSTLMGDEVEPRRDFIETNALYA-QLD 809


>gi|238020581|ref|ZP_04601007.1| hypothetical protein GCWU000324_00467 [Kingella oralis ATCC 51147]
 gi|237867561|gb|EEP68567.1| hypothetical protein GCWU000324_00467 [Kingella oralis ATCC 51147]
          Length = 662

 Score =  515 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 246/666 (36%), Positives = 353/666 (53%), Gaps = 35/666 (5%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y  SSI++L+GLEPV+ RPGMY   T   +  H+  EVIDNA DE + GYA  I V +  
Sbjct: 7   YTESSIKVLKGLEPVKERPGMY---TRTDSPTHIIQEVIDNAADEALGGYATRISVEIHS 63

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN----STYEISGGLHGVGI 159
           +  +TV DNGRGIP  NHP   +   +E++ T LHAGGKF+       Y  SGGLHGVG+
Sbjct: 64  DQSITVRDNGRGIPTGNHP-TEHLPVVELVFTQLHAGGKFNKTEGSGAYAFSGGLHGVGV 122

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SV NALS  L VTV R   I    F+ G  + PL       +   GT +   PD   + +
Sbjct: 123 SVTNALSKRLDVTVKRDGKIQHIAFAGGDVVEPLHPIGTCAQKDTGTEVRVYPD-THYFE 181

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
           +  ++ A L ++ ++KA L   V+   +      +       + +++P GL +YL+  L 
Sbjct: 182 QPSYNLAELERLLRAKAVLLQGVEVSLT-RPSKGQPENATTTQTWHYPQGLPSYLEDLLA 240

Query: 279 NR----SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESG 333
           N      + +SE +  ++           +A+ W EE      SY N I T  GGTHE+G
Sbjct: 241 NAQEAVPIFASENYLAQSNDDFHAGEGAAFALTWLEEGTCANESYVNLIPTPLGGTHEAG 300

Query: 334 LRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           L+ A+   +  +        R + + SDD+   A  +LS  I +P+F GQTK KL + DA
Sbjct: 301 LKQAMFNAVNNFINHHNLLPRGVKLNSDDVFSRAAFVLSARILDPQFQGQTKDKLTNRDA 360

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
            + V +   DP + +L QN     K+ E  I++++ RLR    +++ +K       LPGK
Sbjct: 361 LKLVSSVCSDPLELWLNQNIEHGKKIAELAIKQAQARLRST--KKIEKKKGSGVAVLPGK 418

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L DC        ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN      +++  N +
Sbjct: 419 LTDCESEDIRENELFLVEGDSAGGSAKLARDKNTQAILPLRGKVLNSFEIHRDQLFGNAE 478

Query: 513 IMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           I D+  A+G        + D   LRY K+ I++DADVDG+HI  LLLT FY+    LIE 
Sbjct: 479 IHDISVAIGIDPHGASDQPDLSTLRYGKIAILSDADVDGSHIQVLLLTLFYKHFPKLIEH 538

Query: 570 KHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKG--KIEISRFKGL 620
            H+++  PPLFR+    QG     + +YA D+     ILE   K         ISRFKGL
Sbjct: 539 GHIYVAQPPLFRVDINAQGKNKPARKLYALDQAELDSILERLHKENIKPSAYSISRFKGL 598

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQERAS 679
           GEM   QLK+T +  + R LL+V I        DT++   KLMG  +A  R  +++    
Sbjct: 599 GEMNPDQLKDTTLHPDTRRLLQVTIPDLER--HDTENIFIKLMGKGEAASRRAWMEREGD 656

Query: 680 FIDDVG 685
             + + 
Sbjct: 657 QAE-LD 661


>gi|302341697|ref|YP_003806226.1| DNA gyrase, B subunit [Desulfarculus baarsii DSM 2075]
 gi|301638310|gb|ADK83632.1| DNA gyrase, B subunit [Desulfarculus baarsii DSM 2075]
          Length = 795

 Score =  515 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 228/564 (40%), Positives = 331/564 (58%), Gaps = 16/564 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY A  I++LEGLE VR RP MYIG T    LHHL  EV+DN++DE +AG+   I V + 
Sbjct: 7   NYTADKIKVLEGLEAVRKRPAMYIGSTSVDGLHHLVYEVVDNSVDEAMAGFCENIRVVIH 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++VVD+GRGIPV+ H      S +++++T LHAGGKFD+  Y+++GGLHGVG+SVV
Sbjct: 67  ADNSVSVVDDGRGIPVDFHA-HEGMSAVQVVMTKLHAGGKFDDKAYQVAGGLHGVGVSVV 125

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L V ++R   ++ Q++ RG P+S LE   K R  RGT++TF+PD +IF     +
Sbjct: 126 NALSQWLEVEISRDGKVYHQRYMRGKPVSELEVIGKTRR-RGTKVTFKPDEEIFET-TEY 183

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L+   +  A+L+  ++   + ++   EK        F++ GG+  +++    N + 
Sbjct: 184 SYDILVARMRELAFLNRGLRIDLADERSDEEKS-------FHYKGGINEFVEYISRNSAP 236

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +  +      +K       VE A+ + +     + S+ N I T EGGTH +G + ALTR 
Sbjct: 237 LHPKPIYLAGQKGMVQ---VEIALQYADSYKERLFSFANNINTKEGGTHLTGFKAALTRT 293

Query: 342 IKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
           I  Y      K       DD      G++SV I +P+F GQTK KL + + +  VE  + 
Sbjct: 294 INAYIANNFPKIKTPPSGDDAREGLFGVISVRIPQPQFEGQTKMKLGNSEVKGLVEQIVN 353

Query: 402 DPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
           D    Y  +NP  A ++++ V          R+ +  V RK  + +  LPGKLADCS   
Sbjct: 354 DQLATYFEENPAVARRVVDKVTEAARAREAARKARELVRRKGVLGEHSLPGKLADCSNRD 413

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
           A   ELF+VEGDSAGGSAKQAR+R+ QA+LPL+GKILNV  A   K+  N +I  ++ AL
Sbjct: 414 ATVCELFLVEGDSAGGSAKQARDRNFQAILPLKGKILNVEKARFHKMIENAEIGTIITAL 473

Query: 521 GCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           G     +      LRY K++IMTDADVDG+HI +L+LTFF+++M +LIE  HL++  PPL
Sbjct: 474 GAGIGEEDFNLAKLRYHKIVIMTDADVDGSHIRTLILTFFFRQMPELIEAGHLYIAQPPL 533

Query: 580 FRITQGTKSVYAHDEEHKQKILEE 603
           +RI  G K  Y  DE+  + +L E
Sbjct: 534 YRIVDGKKENYIKDEQSLRSMLLE 557



 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 4/88 (4%)

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           + +L    + G   + + R+KGLGEM   QL +T MD  +RTLL+V+++  +        
Sbjct: 711 EGLLSRLLEDGAKGLGLQRYKGLGEMNPEQLWQTTMDPERRTLLQVKVDDAI----AADT 766

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
               LMG + + R +FI E A     + 
Sbjct: 767 MFATLMGDQVEPRKEFIIENALEARALD 794


>gi|77917622|ref|YP_355437.1| DNA gyrase subunit B [Pelobacter carbinolicus DSM 2380]
 gi|77543705|gb|ABA87267.1| DNA gyrase subunit B [Pelobacter carbinolicus DSM 2380]
          Length = 795

 Score =  515 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 232/571 (40%), Positives = 345/571 (60%), Gaps = 18/571 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y A SI++LEGL  VR RP MYIG T    LHHL  EV+DN++DE +AG  + I V L 
Sbjct: 8   EYGAGSIKVLEGLSAVRKRPAMYIGSTGVMGLHHLVYEVVDNSIDESLAGVCDEISVILH 67

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G +TV DNGRGIPV+ HP   NKS  E+++T LHAGGKFD+ +Y++SGGLHGVG+SVV
Sbjct: 68  LDGSVTVEDNGRGIPVDMHP-TQNKSAAEVVMTVLHAGGKFDSDSYKVSGGLHGVGVSVV 126

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS +L + + R   I+ Q + RG+P +PL ++      RGTRITF PDP+IF +   F
Sbjct: 127 NALSKKLELEIRRNGRIYRQGYVRGVPDAPLREEGDTTK-RGTRITFWPDPEIF-EITDF 184

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  A+L+G V      ++         ++ +F++ GG+ +++      ++ 
Sbjct: 185 SFETLSKRLRELAFLNGGVHIHIVDERS-------EKRHDFHYEGGIISFVSYLNRAKTP 237

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           + +E      E++G     +E A  + +    +I ++ N I T EGGTH  G + ALTR 
Sbjct: 238 LHAEPIFFSGEREGVQ---IEVAFQYNDGYDEKIFTFANNINTHEGGTHLVGFKAALTRT 294

Query: 342 IKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +  YA      + +   I  DDL      ++SV + +P+F GQTKTKL + + +  VE  
Sbjct: 295 MNSYATANNLLKNVKASISGDDLREGMAAVISVKVPDPQFEGQTKTKLGNSEIKGYVETL 354

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458
           + +    ++ +NP  A ++LE  IE +  R   RK R++ R+   +  L LPGKLADC +
Sbjct: 355 INEKLATFMEENPNVAKRILEKGIEAARAREAARKARDLTRRKGVLDSLALPGKLADCQE 414

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E+++VEGDSAGGSAKQ R+R NQA+LPL+GKILNV  A  +K+  + +I  L+ 
Sbjct: 415 KDPALCEIYLVEGDSAGGSAKQGRDRRNQAILPLKGKILNVEKARFDKMLTSNEIRTLIT 474

Query: 519 ALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
           A+G    +  +    LRY ++IIMTDADVDG+HI +LLLTFF+++M +LIE+ +L++  P
Sbjct: 475 AMGTGIGKGDFDISKLRYHRIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYLYIAQP 534

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           PL++  +G + +Y  DE    + L +    G
Sbjct: 535 PLYKAKRGKRELYLKDESALTEYLLDEGVDG 565



 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 4/88 (4%)

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           Q++L+ F+   +    I R+KGLGEM   QL ET MD  KR LL+V++   +    +  +
Sbjct: 711 QELLDFFQARARKGQYIQRYKGLGEMNPDQLWETTMDPEKRILLQVQVEDAV----EANE 766

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
               LMG + + R +FI+  A  + ++ 
Sbjct: 767 IFTVLMGDQVEPRREFIENNALNVSNLD 794


>gi|115499633|dbj|BAF33490.1| DNA gyrase subunit B [Listonella anguillarum]
          Length = 804

 Score =  515 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 229/574 (39%), Positives = 348/574 (60%), Gaps = 17/574 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           SDNYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I V
Sbjct: 2   SDNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP + H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDSSVSVSDDGRGIPTDLHEE-EQVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+++ +T+ R   I +Q +  G+P +PL    +  +K GT + F P  + F + 
Sbjct: 121 SVVNALSEKVLLTIYRNGAIHTQTYCHGVPQAPLAVVGET-DKTGTTLRFWPSAETFTNI 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V      ++E  +K      + F + GG+K ++     N
Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLFDEREEDKK------DHFRYEGGIKAFVGHLNRN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  ++F   +E+      TVE A+ W +     I  + N I   +GG H +G R AL
Sbjct: 233 KTPIHEKVFHFSSERDD--GITVEVAMQWNDGFQENIYCFTNNIPQRDGGAHLAGFRGAL 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNTFMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 351 ESAMGEKLAEFLAENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  DE+   +        G
Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMNQYQVALALDG 564



 Score =  138 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
             L    K  +  + + R+KGLGEM   QL ET MD   R +L+V I   +       + 
Sbjct: 721 DALNWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPESRRMLQVTIEDAVG----ADEL 776

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
              LMG + + R  FI+E A  + ++ 
Sbjct: 777 FTTLMGDQVEPRRAFIEENALKVANLD 803


>gi|224826214|ref|ZP_03699316.1| DNA topoisomerase IV, B subunit [Lutiella nitroferrum 2002]
 gi|224601315|gb|EEG07496.1| DNA topoisomerase IV, B subunit [Lutiella nitroferrum 2002]
          Length = 654

 Score =  515 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 244/664 (36%), Positives = 361/664 (54%), Gaps = 36/664 (5%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  YD SS+R+L+GLEPV+ RPGMY   TD     H+  EVIDNA DE + G+A  I V+
Sbjct: 2   TQQYDESSVRVLKGLEPVKERPGMYTRTTDPT---HICQEVIDNAADEALGGFARKIAVT 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS---TYEISGGLHGV 157
           L  +G L+V D+GRGIPV  HP+      +E++ T LHAGGKF+      Y  SGGLHGV
Sbjct: 59  LHQDGSLSVEDDGRGIPVGLHPQ-EGVPVVELVFTRLHAGGKFNKKDGGAYAFSGGLHGV 117

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR-GTRITFRPDPKIF 216
           G+SV NALS  L V V R+  ++   F+ G  + PL +      +  GTR+   PD K F
Sbjct: 118 GVSVTNALSTRLEVEVKREGGVYRMAFAGGDVIEPLARVGDCGARTSGTRVRVWPDGKYF 177

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                     L ++ ++KA L   V    + ++   +     E + + +P GLK+YL   
Sbjct: 178 ESPRYSLPE-LERLLRAKAVLLPGVAVTLTIERPSGD-----EVKVWQYPQGLKSYLAEL 231

Query: 277 LENRSLISS----EIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHES 332
                 ++     E + G   ++      V+WA+AW E+     SY N I T  GGTHE+
Sbjct: 232 CNGDEPVAPLFSGEAYIGDDHEQFAKGEGVQWALAWFEDGAGGESYVNLIPTPSGGTHEA 291

Query: 333 GLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           GLR  +   +K + +      R + ++++D+      +LS  + +P+F GQTK KL S D
Sbjct: 292 GLRAGVFEAVKSFVDHHNLLPRGVKLMAEDVWSRVRFVLSARVLDPQFQGQTKEKLTSRD 351

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           A + +    RDP + +L Q+     K+ E  I +++ RL+  K+ E  + + +  L  PG
Sbjct: 352 ALKLISGLARDPVELWLNQHVEAGKKIAELAIRQAQSRLKSVKKVEKKKGSGVAVL--PG 409

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL DC        ELF+VEGDSAGGSAK AR++  QA+LPLRGK+LN      +++ +N 
Sbjct: 410 KLTDCESEDIERNELFLVEGDSAGGSAKLARDKEYQAILPLRGKVLNSWETDRDQLFSNA 469

Query: 512 QIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +I D+  A+G    +   + D   LRY K+ I++DADVDG+HI  LLLT FY+    L+ 
Sbjct: 470 EIHDISVAIGVDPHAPGEKADLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHFSALLA 529

Query: 569 QKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHG--KGKIEISRFKG 619
             H+ +  PPLFR+    QG     K +YA DE   + IL+  +  G  +    ISRFKG
Sbjct: 530 NGHICIAQPPLFRVDVPGQGKHRPPKKLYALDEGELEAILDRLRSEGVRENAWSISRFKG 589

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQERA 678
           LGEM   QLK+T M  + R L +V +     +  DT+     LMG  +A  R  +++ + 
Sbjct: 590 LGEMNPEQLKDTTMHPDTRRLTQVRV--RPEAEADTRRMFTMLMGKGEAASRRGWMEAKG 647

Query: 679 SFID 682
           + ++
Sbjct: 648 NEVE 651


>gi|240015025|ref|ZP_04721938.1| DNA gyrase subunit B [Neisseria gonorrhoeae DGI18]
 gi|240081614|ref|ZP_04726157.1| DNA gyrase subunit B [Neisseria gonorrhoeae FA19]
 gi|240122094|ref|ZP_04735056.1| DNA gyrase subunit B [Neisseria gonorrhoeae PID24-1]
 gi|240124387|ref|ZP_04737343.1| DNA gyrase subunit B [Neisseria gonorrhoeae PID332]
          Length = 871

 Score =  515 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 232/634 (36%), Positives = 353/634 (55%), Gaps = 25/634 (3%)

Query: 5   SIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFA-NQSASDNYDASSIRILEGLEPVRMRPG 63
           +  L++   P     ++      +   +PA    +   + Y A SI++LEGLE VR RPG
Sbjct: 44  NTQLYAPSRPLFPQGADCFGGIAKSFQNPAKNMTEQKHEEYGADSIQVLEGLEAVRKRPG 103

Query: 64  MYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122
           MYIG T D   LHH+  EV+DNA+DE +AG+ + I V++  +  ++V DNGRG+P   HP
Sbjct: 104 MYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCDKITVTIHADHSVSVADNGRGMPTGIHP 163

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
           K   +S  E+I+T LHAGGKFDN++Y+ISGGLHGVG+SVVNALSD + +T+ R       
Sbjct: 164 K-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLHGVGVSVVNALSDWVTLTIYRDGKEHFV 222

Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
           +F RG    PL+      +K+GT + F    + FG+   +    L K  +  ++L+  V 
Sbjct: 223 RFVRGETEEPLKIVGD-SDKKGTTVRFLAGTETFGNI-EYSFDILAKRIRELSFLNNGVD 280

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
              + +++        + E F   GG+  ++Q     ++ +  +IF    EK G    +V
Sbjct: 281 IELTDERD-------GKHESFALSGGVAGFVQYMNRKKTPLHEKIFYAFGEKDG---MSV 330

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359
           E A+ W +     +  + N I   +GGTH + LR  +TR I  Y E  +   K  +    
Sbjct: 331 ECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTINSYIEANEVAKKAKVETAG 390

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD+      +LSV + +P+F+ QTK KLVS +    V   +      +L +NP EA  + 
Sbjct: 391 DDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVINQALTDFLEENPNEAKIIT 450

Query: 420 EWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
             +++ +  R   RK RE+ R+   +  L LPGKLADC +     +EL++VEGDSAGGSA
Sbjct: 451 GKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEKDPALSELYLVEGDSAGGSA 510

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537
            Q R+R  QA+LPL+GKILNV  A  EK+  +Q++  L+ ALG    + ++  E LRY +
Sbjct: 511 MQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLITALGAGIGKEEFNPEKLRYHR 570

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           +IIMTDADVDGAHI +LLLTFFY++M +L+E+ ++++  PPL++   G +  Y  DE  K
Sbjct: 571 IIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPPLYKAKYGKQERYLKDELEK 630

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
            + L          +   R      +  ++L +T
Sbjct: 631 DQWLLGLALEKAKIVSDGR-----TIEGAELADT 659



 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%)

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           ++ +G      +D +  +  L+      +  + I R+KGLGEM   QL ET MD   R L
Sbjct: 773 KLYKGENE---YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRL 829

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           L+V I   +       +    LMG + + R  FI+  A    ++  
Sbjct: 830 LKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 871


>gi|83745763|ref|ZP_00942820.1| Topoisomerase IV subunit B [Ralstonia solanacearum UW551]
 gi|207725317|ref|YP_002255713.1| dna topoisomerase iv (subunit b) protein [Ralstonia solanacearum
           MolK2]
 gi|83727453|gb|EAP74574.1| Topoisomerase IV subunit B [Ralstonia solanacearum UW551]
 gi|206590552|emb|CAQ37514.1| dna topoisomerase iv (subunit b) protein [Ralstonia solanacearum
           MolK2]
          Length = 669

 Score =  515 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 252/677 (37%), Positives = 358/677 (52%), Gaps = 45/677 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            ++ S +  Y  +SI++L+GLEPV+ RPGMY   T      H+  EVIDNA DE + G+ 
Sbjct: 6   PSSMSKTPQYSEASIKVLKGLEPVKQRPGMY---TRTDNPLHIVQEVIDNAADEALGGFG 62

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151
            LI V+L  +G ++V D  RGIPV  HP+      +EI+ T LHAGGKFD      Y  S
Sbjct: 63  KLIAVTLHKDGSVSVEDEARGIPVGIHPE-EGVPVVEIVFTRLHAGGKFDKGRGGAYAFS 121

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--LEKKEKVRNKRGTRITF 209
           GGLHGVG+SV NALS  L VTV R   + +  FS G  +      K E+   K GTR+  
Sbjct: 122 GGLHGVGVSVTNALSTRLEVTVWRDGNVSTLTFSGGDVIEQLTTRKAERGEKKNGTRVRV 181

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD K F  +     A L ++ +SKA L   VK   + +K         E  E+ +  GL
Sbjct: 182 WPDAKYFDSEN-IPQAELQRLLRSKAVLLPGVKVALTLEKS-------GETVEWQYDQGL 233

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE----------WAIAWCEENPE-ITSY 318
           + YL   L   S     I   + E         E          W +AW EE      SY
Sbjct: 234 RGYLIESLAQGSGADPVIPLFEGEHFADPDKPGEEGFAFGEGASWVVAWTEEGSPVRESY 293

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREP 377
            N I T  GGTHESGLR  L + +K + E+     + + ++ +D+   A  +LS  + +P
Sbjct: 294 VNLIPTPAGGTHESGLREGLFQAVKSFVEMHALLPKGVKLMPEDVFARASFVLSAKVLDP 353

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F GQ K +L S DA R V    R   + +L Q+     KL E VI +++ R R  ++ E
Sbjct: 354 QFQGQIKERLNSRDAVRLVSTFGRPALELWLNQHVEHGKKLAELVIRQAQARTRAAQKVE 413

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
             + + +  L  PGKL DC  +     ELF+VEGDSAGGSAK  R++  QA+LPLRGK+L
Sbjct: 414 KKKGSGVAVL--PGKLTDCESDDVSRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVL 471

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASL 554
           N      +++  N ++ D+  A+G          D   LRY K+ I++DADVDGAHI  L
Sbjct: 472 NTWETERDRLFANNEVHDIAVAIGVDPHGPTDSVDLSGLRYGKICILSDADVDGAHIQVL 531

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG 608
           LLT F++    LIE+ ++ +  PPL+R+    +G K    +YA D+   + I ++ +K G
Sbjct: 532 LLTLFFKHFPQLIERGNVCVARPPLYRVDAPARGKKPAQKLYALDDGELEAIEDKLRKDG 591

Query: 609 KG--KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT- 665
                 +ISRFKGLGEM A QL ET M+ + R LL V I +     + T + +N LMG  
Sbjct: 592 LKEDSWQISRFKGLGEMSAEQLWETTMNPDTRRLLPVSIGEPG--PEQTVNMMNMLMGKG 649

Query: 666 KADERFKFIQERASFID 682
           +A  R  +++ R + ++
Sbjct: 650 EAGARRTWLEARGNEVE 666


>gi|301633245|gb|ADK86799.1| DNA topoisomerase IV, B subunit [Mycoplasma pneumoniae FH]
          Length = 635

 Score =  515 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 234/649 (36%), Positives = 360/649 (55%), Gaps = 30/649 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY  ++I+IL+GL+ V+ RPGMYIG TD +  HHL  E++DN +DEV++G+AN I V L
Sbjct: 3   NNYSEANIKILKGLDAVKKRPGMYIGSTDSRGFHHLLWEILDNCVDEVLSGFANTIAVVL 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
                +TV DNGRGIP E H      ST++ + T LHAGGKFDN +Y+I+GGLHGVG SV
Sbjct: 63  HAENQITVSDNGRGIPFETHS-DSKISTIDTVFTYLHAGGKFDNDSYKIAGGLHGVGASV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDK 219
           VNALSD+L VTV RQ  ++   +  G  +            ++ GT +TFRPDPK+F   
Sbjct: 122 VNALSDQLQVTVKRQGKVYRSVYENGGKIKQKAHCIGNAKIDEHGTSVTFRPDPKVFKKI 181

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             FD+  +    +  A+L  +++  +  +    EK      E F+   G+  YL     +
Sbjct: 182 H-FDSELIRARLKELAFLFKKLQLTFVDETGSGEK------EVFFTEAGISQYLDELNAD 234

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
              I+ +IF   TE         ++      E+ ++ S+ N+I T EGG+HE+G R ++ 
Sbjct: 235 SKQIAQKIFVSGTEDDIELEAVFQFIDG---EDEKLLSFANSIRTSEGGSHEAGFRQSVG 291

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395
             I  Y        +R  +  + ++     GI+ V + E    F GQTK+KL S + +  
Sbjct: 292 DVINNYCRKYNFLKERDKNFEASEIREGLNGIIKVNLPEKIIAFEGQTKSKLFSKEVKAV 351

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP--GKL 453
           V+   +  F  +L +N ++A  ++E +    + R   ++QR++ +  +  K      GKL
Sbjct: 352 VQKLTQKHFFQFLERNSVDAKLIVEKLFYNRKLRQELKQQRQIKKNLSNPKAERILFGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK-IRNNQQ 512
           A          ELF+VEGDSAGG+AK  R+R  QA+LPLRGK+LNV    ++K   NN++
Sbjct: 412 APAQSKKVAERELFVVEGDSAGGTAKMGRDRFLQAILPLRGKVLNVEKINNKKEAINNEE 471

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           ++ L+  +G    + +   D +Y+K+IIMTDAD DGAHI  LLLTFFY+ M  LIE+ H+
Sbjct: 472 LLTLIFCIGTGIGNNFTIRDRKYDKIIIMTDADNDGAHIQILLLTFFYRYMKPLIEKGHI 531

Query: 573 FLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +L  PPL++   +  K+ Y   E+  ++   +          + R+KGLGEM A QL ET
Sbjct: 532 YLALPPLYKFEGRDKKARYLWTEQELEQYRAKH-----SHFNVQRYKGLGEMNADQLWET 586

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            M+   R L++++++  + + K      N  MG K + R  +I+   +F
Sbjct: 587 TMNPMTRKLIQIKLDNFIQAEKQI----NVFMGDKTELRKSWIEANINF 631


>gi|254429302|ref|ZP_05043009.1| DNA gyrase, B subunit [Alcanivorax sp. DG881]
 gi|196195471|gb|EDX90430.1| DNA gyrase, B subunit [Alcanivorax sp. DG881]
          Length = 805

 Score =  515 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 231/580 (39%), Positives = 348/580 (60%), Gaps = 20/580 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
           A  NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I+
Sbjct: 2   AEKNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGFCSEIK 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V +  +  +++ DNGRGIP E H +    S  E+I+T LHAGGKFD++TY++SGGLHGVG
Sbjct: 62  VVIHPDESMSIQDNGRGIPTELHEE-EGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +T+ R   +  Q +  G+P +PLE      +  GT + FRP P+ F +
Sbjct: 121 VSVVNALSEELKLTIRRNGQVHEQIYHHGVPANPLEVVG-TTDSSGTAVHFRPSPETFSN 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V+     ++   E       + F + GGL  ++     
Sbjct: 180 I-KFHYDILAKRLRELSFLNSGVRIHLMDERSGDE-------DVFEYEGGLSAFVSYLNT 231

Query: 279 NRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           N++ ++       + E+ G     VE A+ W +     I  + N I   +GGTH +G R 
Sbjct: 232 NKTALNQVFHFNFEREEDGI---AVEVAMQWNDSYQENIFCFTNNIPQRDGGTHLAGFRA 288

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y +      K   +   DD       ++SV + +P+F+ QTK KLVS + + 
Sbjct: 289 ALTRTLNSYMDKEGFLKKEKANPSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKS 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKL 453
            VE  + D F  YL++NP EA  +++ +I+ +  R   RK      RK A+    LPGKL
Sbjct: 349 AVEQTMGDLFQDYLLENPGEARSIVQKIIDAARARDAARKAREMTRRKGALDIAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC Q     +EL+IVEGDSAGGSAKQ R+R NQA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 409 ADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSQEV 468

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC   R +Y  + LRY ++IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++
Sbjct: 469 GTLITALGCGIGRDEYNIDKLRYHRIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612
           ++  PPL+++ +G +  Y  D+   ++ L        G  
Sbjct: 529 YIAQPPLYKVKKGKQETYLKDDPAMEEYLTTLALDKTGLY 568



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 4/91 (4%)

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
            H  + L+      +      R+KGLGEM A QL ET MD   R +L+V I   +     
Sbjct: 718 RHFAEALDWLMVQARRGTSFQRYKGLGEMNADQLWETTMDPESRRMLQVTIEDAI----A 773

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
                  LMG   D R +FI+  A  + ++ 
Sbjct: 774 ADQIFTCLMGDDVDPRRQFIESNALQVSNLD 804


>gi|172061321|ref|YP_001808973.1| DNA topoisomerase IV subunit B [Burkholderia ambifaria MC40-6]
 gi|171993838|gb|ACB64757.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia ambifaria MC40-6]
          Length = 660

 Score =  515 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 243/676 (35%), Positives = 362/676 (53%), Gaps = 47/676 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +  S  Y  +SI++L+GLEPV+ RPGMY   T  +   H+  EVIDNA DE + G+ 
Sbjct: 1   MSTKKPSAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGHG 57

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151
             I V+L  +  ++V D+GRGIP   HP+      +EI+ T LHAGGKFD      Y  S
Sbjct: 58  KQITVTLHADQSVSVEDDGRGIPFGMHPE-EGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITF 209
           GGLHGVG+SV NAL+  L VTV R   I    F+ G  + PL  +   R   + GTR+  
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKIAELGFADGDVVKPLTTQGAGRGEKRSGTRVQV 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P+PK F          L ++ +SKA L   V+     +K         E++ + +  GL
Sbjct: 177 WPNPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVVLVNEK-------TGERQTWKYEDGL 228

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE---------WAIAWCEENP-EITSYC 319
           + YL  ++    L+       + E+    R T E         W +AW EE      SY 
Sbjct: 229 RGYLLDEMNGSELLIP---LFEGERFADARSTDETFAEGEGASWVVAWSEEGSLVRESYV 285

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPE 378
           N I T  GGTHESGLR  L + +K + EL     + + ++++D+      +LS  + +P+
Sbjct: 286 NLIPTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQ 345

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
           F GQ K +L S DA + V +  R   + +L Q+     KL E VI++++ R R  ++ E 
Sbjct: 346 FQGQIKERLNSRDAVKLVSSFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKVEK 405

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +  L  PGKL DC        ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN
Sbjct: 406 RKSSGVAVL--PGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLN 463

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLL 555
                 +++  N ++ D+  A+G    S        +LRY K+ I++DADVDG+HI  LL
Sbjct: 464 TWETERDRLFANNEVHDISVAIGVDPHSPDETVDLSNLRYGKICILSDADVDGSHIQVLL 523

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG- 608
           LT F++    LIE+ H+ +  PPLFR+    +G K    +YA DE   +  L++ +K G 
Sbjct: 524 LTLFFKHFPQLIERGHVHVARPPLFRVDAPARGKKPAQKLYALDEGELEATLDKLRKDGV 583

Query: 609 -KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-K 666
            + +  ISRFKGLGEM A QL +T M+ + R L+ V++       + T   +  LMG  +
Sbjct: 584 RETQWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKL--GELDYESTVARMTMLMGKGE 641

Query: 667 ADERFKFIQERASFID 682
           A  R  +++E+ + ++
Sbjct: 642 AAARRGWLEEKGNDVE 657


>gi|240949606|ref|ZP_04753941.1| DNA gyrase subunit B [Actinobacillus minor NM305]
 gi|240295864|gb|EER46540.1| DNA gyrase subunit B [Actinobacillus minor NM305]
          Length = 809

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 237/582 (40%), Positives = 351/582 (60%), Gaps = 20/582 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           ++    +YD+SSI++L GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY  
Sbjct: 2   SEQNQQSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCQ 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V D+GRGIPV  HP+    S  E+I+T LHAGGKFD+++Y++SGGLH
Sbjct: 62  DIVVTIHSDNSVSVQDDGRGIPVGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS +L +T+ R+  +  Q +S G P +PL       +K GT + F P   I
Sbjct: 121 GVGVSVVNALSSKLQLTIRREGHVHEQFYSLGEPNAPLTVIGNT-DKTGTMVRFWPSLDI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +K  F+   L K  +  ++L+  V      +++  E       E F + GG+K Y++ 
Sbjct: 180 FKNKTEFEYKILSKRLRELSFLNSGVSIRLVDERDGKE-------EHFKYEGGIKAYVEY 232

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             E ++ I +  F   TEK G     VE ++ W +     +  + N I   +GGTH +G 
Sbjct: 233 LNEGKTHIHNMPFYLSTEKDGI---GVEVSLQWNDSYNENVYCFTNNIPQRDGGTHLAGF 289

Query: 335 RVALTRGIKKYAELTQNKR----AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           R ALTR +K Y + +   +     I    DD     V ++SV + +P+F+ QTK KLVS 
Sbjct: 290 RAALTRALKNYMDNSGVLKKADANIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLVSS 349

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRL 449
           + +  VE+++ +    YL +NP +A  ++  +I+ +  R   RK R    RK A+    L
Sbjct: 350 EVRGAVESSMNEALAEYLAENPDDAKNIVSKIIDAARAREAARKAREMTRRKGALDLGGL 409

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +EL++VEGDSAGGSAKQ R+R NQA+LPL+GKILNV  A  +K+ +
Sbjct: 410 PGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLS 469

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q++  L+ ALG    R  Y  E LRY K+IIMTDADVDGAHI +LLLTFFY++M +LIE
Sbjct: 470 SQEVATLITALGTGIGRDDYNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELIE 529

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
             ++++  PPL+++ +G +  Y  D +   +   +    G G
Sbjct: 530 NGYIYIAQPPLYKVKKGKQERYIQDNDEMSQYEIDIALEGAG 571



 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 5/89 (5%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
             + L+   K  +  + I R+KGLGEM   QL ET MD   R +L+V I   +       
Sbjct: 725 FAEALDWLVKESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNITDAI----AAD 780

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
              + LMG + + R  FI+  A +   + 
Sbjct: 781 KLFSTLMGDEVEPRRDFIESNALYA-QLD 808


>gi|239997997|ref|ZP_04717921.1| DNA gyrase subunit B [Neisseria gonorrhoeae 35/02]
 gi|240017473|ref|ZP_04724013.1| DNA gyrase subunit B [Neisseria gonorrhoeae FA6140]
 gi|240113895|ref|ZP_04728385.1| DNA gyrase subunit B [Neisseria gonorrhoeae MS11]
 gi|240116627|ref|ZP_04730689.1| DNA gyrase subunit B [Neisseria gonorrhoeae PID18]
 gi|240124740|ref|ZP_04737626.1| DNA gyrase subunit B [Neisseria gonorrhoeae SK-92-679]
 gi|240129064|ref|ZP_04741725.1| DNA gyrase subunit B [Neisseria gonorrhoeae SK-93-1035]
 gi|291042854|ref|ZP_06568595.1| DNA gyrase subunit B [Neisseria gonorrhoeae DGI2]
 gi|291013288|gb|EFE05254.1| DNA gyrase subunit B [Neisseria gonorrhoeae DGI2]
 gi|317165439|gb|ADV08980.1| DNA gyrase subunit B [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 871

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 232/634 (36%), Positives = 353/634 (55%), Gaps = 25/634 (3%)

Query: 5   SIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFA-NQSASDNYDASSIRILEGLEPVRMRPG 63
           +  L++   P     ++      +   +PA    +   + Y A SI++LEGLE VR RPG
Sbjct: 44  NTQLYAPSRPLFPQGADCFGGIAKSFQNPAKNMTEQKHEEYGADSIQVLEGLEAVRKRPG 103

Query: 64  MYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122
           MYIG T D   LHH+  EV+DNA+DE +AG+ + I V++  +  ++V DNGRG+P   HP
Sbjct: 104 MYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCDKITVTIHADHSVSVADNGRGMPTGIHP 163

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
           K   +S  E+I+T LHAGGKFDN++Y+ISGGLHGVG+SVVNALSD + +T+ R       
Sbjct: 164 K-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLHGVGVSVVNALSDWVTLTIYRDGKEHFV 222

Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
           +F RG    PL+      +K+GT + F    + FG+   +    L K  +  ++L+  V 
Sbjct: 223 RFVRGETEEPLKIVGD-SDKKGTTVRFLAGTETFGNI-EYSFDILAKRIRELSFLNNGVD 280

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
              + +++        + E F   GG+  ++Q     ++ +  +IF    EK G    +V
Sbjct: 281 IELTDERD-------GKHESFALSGGVAGFVQYMNRKKTPLHEKIFYAFGEKDG---MSV 330

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359
           E A+ W +     +  + N I   +GGTH + LR  +TR I  Y E  +   K  +    
Sbjct: 331 ECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTINSYIEANEVAKKAKVETAG 390

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD+      +LSV + +P+F+ QTK KLVS +    V   +      +L +NP EA  + 
Sbjct: 391 DDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVINQALTDFLEENPNEAKIIT 450

Query: 420 EWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
             +++ +  R   RK RE+ R+   +  L LPGKLADC +     +EL++VEGDSAGGSA
Sbjct: 451 GKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEKDPALSELYLVEGDSAGGSA 510

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537
            Q R+R  QA+LPL+GKILNV  A  EK+  +Q++  L+ ALG    + ++  E LRY +
Sbjct: 511 MQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLITALGAGIGKEEFNPEKLRYHR 570

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           +IIMTDADVDGAHI +LLLTFFY++M +L+E+ ++++  PPL++   G +  Y  DE  K
Sbjct: 571 IIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPPLYKAKYGKQERYLKDELEK 630

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
            + L          +   R      +  ++L +T
Sbjct: 631 DQWLLGLALEKAKIVSDGR-----TIEGAELADT 659



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%)

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           ++ +G      +D +  +  L+      +  + I R+KGLGEM   QL ET MD   R L
Sbjct: 773 KLYKGENE---YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRL 829

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           L+V I   +       +    LMG + + R  FI+  A    ++  
Sbjct: 830 LKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 871


>gi|53718706|ref|YP_107692.1| DNA topoisomerase IV subunit B [Burkholderia pseudomallei K96243]
 gi|53726261|ref|YP_103773.1| DNA topoisomerase IV subunit B [Burkholderia mallei ATCC 23344]
 gi|76812112|ref|YP_332710.1| DNA topoisomerase IV subunit B [Burkholderia pseudomallei 1710b]
 gi|121598410|ref|YP_992040.1| DNA topoisomerase IV subunit B [Burkholderia mallei SAVP1]
 gi|124384898|ref|YP_001028484.1| DNA topoisomerase IV subunit B [Burkholderia mallei NCTC 10229]
 gi|126440609|ref|YP_001058186.1| DNA topoisomerase IV subunit B [Burkholderia pseudomallei 668]
 gi|126450291|ref|YP_001081617.1| DNA topoisomerase IV subunit B [Burkholderia mallei NCTC 10247]
 gi|126455235|ref|YP_001065424.1| DNA topoisomerase IV subunit B [Burkholderia pseudomallei 1106a]
 gi|134281153|ref|ZP_01767862.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei 305]
 gi|166998425|ref|ZP_02264285.1| DNA topoisomerase IV, B subunit [Burkholderia mallei PRL-20]
 gi|167737678|ref|ZP_02410452.1| DNA topoisomerase IV subunit B [Burkholderia pseudomallei 14]
 gi|167821799|ref|ZP_02453479.1| DNA topoisomerase IV subunit B [Burkholderia pseudomallei 91]
 gi|167823284|ref|ZP_02454755.1| DNA topoisomerase IV subunit B [Burkholderia pseudomallei 9]
 gi|167844836|ref|ZP_02470344.1| DNA topoisomerase IV subunit B [Burkholderia pseudomallei B7210]
 gi|167901843|ref|ZP_02489048.1| DNA topoisomerase IV subunit B [Burkholderia pseudomallei NCTC
           13177]
 gi|167910066|ref|ZP_02497157.1| DNA topoisomerase IV subunit B [Burkholderia pseudomallei 112]
 gi|167918094|ref|ZP_02505185.1| DNA topoisomerase IV subunit B [Burkholderia pseudomallei BCC215]
 gi|217420238|ref|ZP_03451744.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei 576]
 gi|226194456|ref|ZP_03790054.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei Pakistan
           9]
 gi|237811436|ref|YP_002895887.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei MSHR346]
 gi|238561081|ref|ZP_00442775.2| DNA topoisomerase IV, B subunit [Burkholderia mallei GB8 horse 4]
 gi|242316466|ref|ZP_04815482.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei 1106b]
 gi|254175499|ref|ZP_04882159.1| DNA topoisomerase IV, subunit B [Burkholderia mallei ATCC 10399]
 gi|254181318|ref|ZP_04887915.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei 1655]
 gi|254195128|ref|ZP_04901557.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei S13]
 gi|254202474|ref|ZP_04908837.1| DNA topoisomerase IV, subunit B [Burkholderia mallei FMH]
 gi|254207809|ref|ZP_04914159.1| DNA topoisomerase IV, subunit B [Burkholderia mallei JHU]
 gi|254259070|ref|ZP_04950124.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei 1710a]
 gi|254298402|ref|ZP_04965854.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei 406e]
 gi|254356286|ref|ZP_04972562.1| DNA topoisomerase IV, subunit B [Burkholderia mallei 2002721280]
 gi|52209120|emb|CAH35064.1| topoisomerase IV subunit B [Burkholderia pseudomallei K96243]
 gi|52429684|gb|AAU50277.1| DNA topoisomerase IV, subunit B [Burkholderia mallei ATCC 23344]
 gi|76581565|gb|ABA51040.1| DNA topoisomerase IV, subunit B [Burkholderia pseudomallei 1710b]
 gi|121227220|gb|ABM49738.1| DNA topoisomerase IV, subunit B [Burkholderia mallei SAVP1]
 gi|124292918|gb|ABN02187.1| DNA topoisomerase IV, B subunit [Burkholderia mallei NCTC 10229]
 gi|126220102|gb|ABN83608.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei 668]
 gi|126228877|gb|ABN92417.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei 1106a]
 gi|126243161|gb|ABO06254.1| DNA topoisomerase IV, B subunit [Burkholderia mallei NCTC 10247]
 gi|134247459|gb|EBA47544.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei 305]
 gi|147746721|gb|EDK53798.1| DNA topoisomerase IV, subunit B [Burkholderia mallei FMH]
 gi|147751703|gb|EDK58770.1| DNA topoisomerase IV, subunit B [Burkholderia mallei JHU]
 gi|148025283|gb|EDK83437.1| DNA topoisomerase IV, subunit B [Burkholderia mallei 2002721280]
 gi|157808181|gb|EDO85351.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei 406e]
 gi|160696543|gb|EDP86513.1| DNA topoisomerase IV, subunit B [Burkholderia mallei ATCC 10399]
 gi|169651876|gb|EDS84569.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei S13]
 gi|184211856|gb|EDU08899.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei 1655]
 gi|217397542|gb|EEC37558.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei 576]
 gi|225933541|gb|EEH29530.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei Pakistan
           9]
 gi|237504774|gb|ACQ97092.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei MSHR346]
 gi|238525514|gb|EEP88942.1| DNA topoisomerase IV, B subunit [Burkholderia mallei GB8 horse 4]
 gi|242139705|gb|EES26107.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei 1106b]
 gi|243065486|gb|EES47672.1| DNA topoisomerase IV, B subunit [Burkholderia mallei PRL-20]
 gi|254217759|gb|EET07143.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei 1710a]
          Length = 660

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 242/673 (35%), Positives = 359/673 (53%), Gaps = 41/673 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +  +  Y  +SI++L+GLEPV+ RPGMY   T  +   H+  EVIDNA DE + G+ 
Sbjct: 1   MSTKKPAAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGFG 57

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151
             I V+L  +  ++V D+GRGIP   HP+      +EI+ T LHAGGKFD      Y  S
Sbjct: 58  KQITVTLHPDQSVSVEDDGRGIPFGLHPE-EKVPVVEIVFTRLHAGGKFDKAKGGAYTFS 116

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITF 209
           GGLHGVG+SV NAL+  L VTV R   I    F+ G  + PL  +   R   K GTR+T 
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGRIAQLGFADGDVVKPLATQGAGRGEKKSGTRVTV 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P+PK F          L ++ +SKA L   V+     +K         E++ + +  GL
Sbjct: 177 WPNPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVVLVNEK-------TGERQSWKYDDGL 228

Query: 270 KTYLQTKLENRSLISSEI------FTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTI 322
           + YL  ++    L+           +   +          W +AW EE      SY N I
Sbjct: 229 RGYLLDEMNGSELLIPLFEGERFADSRSGDDTFAEGEGASWVVAWSEEGSLVRESYVNLI 288

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAG 381
            T  GGTHESGLR  L + +K + EL     + + ++++D+      +LS  + +P+F G
Sbjct: 289 PTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQG 348

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           Q K +L S DA + V +  R   + +L Q+     KL E VI++++ R R  ++ E  + 
Sbjct: 349 QIKERLNSRDAVKLVSSFTRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKVEKKKS 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +  L  PGKL DC        ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN   
Sbjct: 409 SGVAVL--PGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWE 466

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQY---REEDLRYEKVIIMTDADVDGAHIASLLLTF 558
              +++  N ++ D+  A+G             +LRY K+ I++DADVDGAHI  LLLT 
Sbjct: 467 TERDRLFANNEVHDISVAIGVDPHGPDDSVDVSNLRYGKICILSDADVDGAHIQVLLLTL 526

Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KG 610
           F++    LIE+ H+F+  PPLFR+    +G K    +YA DE   + IL++ +K G  + 
Sbjct: 527 FFKHFPQLIERGHVFVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDGVRES 586

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669
           +  ISRFKGLGEM A QL +T M+ + R L+ V +       + T   +  LMG  +A  
Sbjct: 587 QWTISRFKGLGEMSAEQLWDTTMNPDTRRLMPVAL--GELDFEATVARMTMLMGKGEAAA 644

Query: 670 RFKFIQERASFID 682
           R  +++E+ + ++
Sbjct: 645 RRNWLEEKGNEVE 657


>gi|54307248|ref|YP_128268.1| DNA gyrase subunit B [Photobacterium profundum SS9]
 gi|46911668|emb|CAG18466.1| Putative DNA gyrase, subunit B [Photobacterium profundum SS9]
          Length = 805

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 224/566 (39%), Positives = 346/566 (61%), Gaps = 17/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I +
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCEDIII 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP + H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDNSVSVSDDGRGIPTDIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+++ +T+ R   I  Q +  G+P  PLE   +  +K GT + F P    F + 
Sbjct: 121 SVVNALSEKVELTIYRHGFIHHQIYRHGVPDKPLETIGET-DKTGTLLRFWPSEGTFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V      ++E        +++ F + GG++ ++     N
Sbjct: 180 V-FHYEILAKRLRELSFLNSGVSIRLIDERE------EGKQDHFMYEGGIRAFVAHLNRN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I +++F    E++      VE A+ W +     I  + N I   +GG+H +G R AL
Sbjct: 233 KTPIHAKVFHFDFERED--GIVVEVAMQWNDGFQENIYCFTNNIPQRDGGSHLAGFRGAL 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  + +      K   S   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNTFMDKEGYSKKEKTSTCGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+ + +    +L++NP +A  +   +I+ S  R   RK R    RK A+    LPGKLAD
Sbjct: 351 ESVMGEKLSEFLLENPSDAKIVCGKIIDASRAREAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ A+GC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ H+++
Sbjct: 471 LITAMGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  D+E   + 
Sbjct: 531 AQPPLYKVKKGKQEQYIKDDEDMDQY 556



 Score =  137 bits (344), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + + R+KGLGEM   QL ET MD   R +L+V IN  +       
Sbjct: 720 FKEGLDWLIKESRRGVYLQRYKGLGEMNPEQLWETTMDPESRRMLQVTINDAV----AAD 775

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           +    LMG + + R  FI+E A  + ++ 
Sbjct: 776 ELFTTLMGDQVEPRRNFIEENALKVANLD 804


>gi|307544310|ref|YP_003896789.1| DNA topoisomerase IV subunit B [Halomonas elongata DSM 2581]
 gi|307216334|emb|CBV41604.1| DNA topoisomerase IV subunit B [Halomonas elongata DSM 2581]
          Length = 626

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 239/644 (37%), Positives = 337/644 (52%), Gaps = 27/644 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y ASSI +L GLEPVR RPGMY   TD    +HL  EVIDN++DE + G+A  I V L 
Sbjct: 3   QYSASSIEVLAGLEPVRKRPGMY---TDTSRPNHLIQEVIDNSVDEALGGHAKAIAVRLF 59

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G + V D+GRG+P++ HP+    S +E+I+T LHAGGKF  S+Y  SGGLHGVG+SVV
Sbjct: 60  EDGGVEVSDDGRGMPIDIHPEH-GVSGIELIMTKLHAGGKFSASSYRFSGGLHGVGVSVV 118

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221
           NALS  L V V +  +     F  G   S L       +   GT + F P+   F     
Sbjct: 119 NALSRRLEVEVLKDGSRHHMAFEHGERASDLTVIGSAAKRATGTLVRFWPEASYFDSP-K 177

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
               RL  + ++KA L   ++                 +  + F  GL+ YL    +   
Sbjct: 178 LSLTRLKHLLRAKAVLCPGLQVTLV--------EADGTESVWQFEDGLRDYLAQATDGYE 229

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVALT 339
           ++ +  F G    +      V+WAI W  E  E    SY N I T  GGTH +GLR  + 
Sbjct: 230 VLPASPFVGHFADE---EQAVDWAIQWLPEGGEPLLESYVNLIPTPLGGTHVNGLRSGML 286

Query: 340 RGIKKYAEL-TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             ++++ E  +   R + + ++DL      +LSV + EP+FAGQTK +L S      V  
Sbjct: 287 EALREFCEYRSLLPRGVKLTAEDLWERVSYVLSVKMLEPQFAGQTKERLSSRTVAGFVSG 346

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++D F  +L  +  +   L E VI  ++ R +    ++V RK       LPGKLADCS 
Sbjct: 347 VVKDAFSLWLNHHVDQGEALAELVISAAQRRQK--SAKKVARKKVTSGPALPGKLADCSG 404

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +ELF+VEGDSAGGSAKQAR R  QA+LPLRGKILN     +  I  +Q++ D+  
Sbjct: 405 QDPASSELFLVEGDSAGGSAKQARQRETQAILPLRGKILNTWEVEAHDIYGSQEVHDIAV 464

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+F+  PP
Sbjct: 465 AIGMEPGSDDL-SKLRYHKICILADADSDGLHIATLLCALFVRHFPALVDAGHVFVAMPP 523

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+RI  G +  YA DE  K  IL   +   +G   + RFKGLGEM   QL+ET M A  R
Sbjct: 524 LYRIDLGKEVFYALDESEKAAILRRLEGK-RGTPNVQRFKGLGEMSPLQLRETTMAAETR 582

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            L+++       +L+        L   +A +R  ++++  +  +
Sbjct: 583 RLVQLTREVGDGTLEMMDML---LAKKRASDRKSWLEDYGNLAE 623


>gi|170700644|ref|ZP_02891642.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia ambifaria
           IOP40-10]
 gi|170134463|gb|EDT02793.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia ambifaria
           IOP40-10]
          Length = 660

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 244/676 (36%), Positives = 362/676 (53%), Gaps = 47/676 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +  S  Y  +SI++L+GLEPV+ RPGMY   T  +   H+  EVIDNA DE + G+ 
Sbjct: 1   MSTKKPSAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGHG 57

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151
             I V+L  +  ++V D+GRGIP   HP+      +EI+ T LHAGGKFD      Y  S
Sbjct: 58  KQITVTLHADQSVSVEDDGRGIPFGMHPE-EGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITF 209
           GGLHGVG+SV NAL+  L VTV R   I    F+ G  + PL  +   R   K GTR+  
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKIAELGFADGDVVKPLTTQGAGRGEKKSGTRVQV 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P+PK F          L ++ +SKA L   V+     +K         E++ + +  GL
Sbjct: 177 WPNPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVVLVNEK-------TGERQTWKYEDGL 228

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE---------WAIAWCEENP-EITSYC 319
           + YL  ++    L+       + E+    R T E         W +AW EE      SY 
Sbjct: 229 RGYLLDEMNGSELLIP---LFEGERFADARSTDETFAEGEGASWVVAWSEEGSLVRESYV 285

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPE 378
           N I T  GGTHESGLR  L + +K + EL     + + ++++D+      +LS  + +P+
Sbjct: 286 NLIPTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQ 345

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
           F GQ K +L S DA + V +  R   + +L Q+     KL E VI++++ R R  ++ E 
Sbjct: 346 FQGQIKERLNSRDAVKLVSSFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKVEK 405

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +  L  PGKL DC        ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN
Sbjct: 406 RKSSGVAVL--PGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLN 463

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLL 555
                 +++  N ++ D+  A+G    S        +LRY K+ I++DADVDG+HI  LL
Sbjct: 464 TWETERDRLFANNEVHDISVAIGVDPHSPDETVDLSNLRYGKICILSDADVDGSHIQVLL 523

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG- 608
           LT F++    LIE+ H+ +  PPLFR+    +G K    +YA DE   +  L++ +K G 
Sbjct: 524 LTLFFKHFPQLIERGHVHVARPPLFRVDAPARGKKPAQKLYALDEGELEATLDKLRKDGV 583

Query: 609 -KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-K 666
            + +  ISRFKGLGEM A QL +T M+ + R L+ V++       + T   +  LMG  +
Sbjct: 584 RETQWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKL--GELDYESTVARMTMLMGKGE 641

Query: 667 ADERFKFIQERASFID 682
           A  R  +++E+ + ++
Sbjct: 642 AAARRGWLEEKGNDVE 657


>gi|254477019|ref|ZP_05090405.1| DNA gyrase, B subunit [Ruegeria sp. R11]
 gi|214031262|gb|EEB72097.1| DNA gyrase, B subunit [Ruegeria sp. R11]
          Length = 805

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 228/580 (39%), Positives = 335/580 (57%), Gaps = 16/580 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
             N+ A   Y A SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DN +DE +AG+
Sbjct: 2   SGNEQAPAEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGH 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ + V +  +  ++V DNGRGIPV+ HP+    S  E+I+T LHAGGKFD+++Y++SGG
Sbjct: 62  ADRVVVKIHADSSVSVSDNGRGIPVDIHPE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALSD L + + R       +F RG     L       ++ GT + F    
Sbjct: 121 LHGVGVSVVNALSDWLELRIWRNGKEHVARFERGDTAKHLTVVGDCGDQTGTEVRFLAST 180

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
             F +   +    L K  +  A+L+  V+     ++            E ++ GG+K ++
Sbjct: 181 DTFSNL-EYSFETLEKRLRELAFLNSGVRIILEDER-----PAEKLTAELFYEGGVKEFV 234

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +    +++ +         EK       VE A+ W +     +  + N I   +GGTH +
Sbjct: 235 KYLDRSKTPVMDAPVYITGEKDDI---GVEVAMWWNDSYHETVLPFTNNIPQRDGGTHVA 291

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR I  YA+ +    K  +S   DD       +LSV + +P+F+ QTK KLVS 
Sbjct: 292 GFRGALTRTINNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 351

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           + +  VE+ + +    +  +NP EA +++  +IE +  R   RK RE   RKTA+    L
Sbjct: 352 EVRPVVESLVGEKLAEWFEENPNEAKQIVGKIIEAALAREAARKARELTRRKTAMDVNYL 411

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
            GKL DCS+     TE+F+VEGDSAGGSA+  R+R  QA+LPLRGKILNV  A  +++  
Sbjct: 412 AGKLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRMTQAILPLRGKILNVERARFDRMLG 471

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q+I +LV ALG    R ++  E LRY K++IMTDADVDGAHI +LLLTFFY++M +LIE
Sbjct: 472 SQEIGNLVMALGTGIGRDEFNIEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIE 531

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             +L++  PPL+++++G   VY  D+    + L      G
Sbjct: 532 GGYLYIAQPPLYKVSRGKSEVYLKDQAALDEYLINQGVEG 571



 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 4/86 (4%)

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
           +L+   + G+  + + R+KGLGEM   QL ET +D + RTLL+V +      + +  D  
Sbjct: 723 LLQAILEEGEKGLTLQRYKGLGEMNPDQLWETTLDPDARTLLQVRVED----MVEADDLF 778

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
            KLMG   + R +FIQ+ A  ++++ 
Sbjct: 779 TKLMGDVVEPRREFIQKNALSVENLD 804


>gi|145629698|ref|ZP_01785494.1| DNA topoisomerase IV subunit B [Haemophilus influenzae 22.1-21]
 gi|144978035|gb|EDJ87814.1| DNA topoisomerase IV subunit B [Haemophilus influenzae 22.1-21]
          Length = 617

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 246/630 (39%), Positives = 345/630 (54%), Gaps = 21/630 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + NY A  I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE +AG+A  IEV 
Sbjct: 2   TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRPNHLAQEVIDNSVDEALAGFATKIEVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  + V DNGRG+PV+ HP     S +E+ILT LHAGGKF N  YE +GGLHGVGIS
Sbjct: 59  LHPDQSIEVTDNGRGMPVDIHP-TEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ + + V R   ++   F  G  +  LE       +             + D A
Sbjct: 118 VVNALSERVDIQVKRNGEVYKIAFENGSKVEELEIIGTCGRRTTGTTVHFKPNPKYFDSA 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L   ++  +              ++ + +  GL  YL   +   
Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDK-------VNNTQDIWLYEDGLSDYLIEAVNGF 230

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +  + F G+ +        V WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 231 ETLPEKPFVGEFKG---ANEAVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGL 287

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              I+++ E      R + + +DD+      ILS+ +++ +FAGQTK +L S  +   V 
Sbjct: 288 LDAIREFCEFRNLLPRGVKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVS 347

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             L+D F  +L QN  +A KL E  I  ++ RLR    ++V RK  +    LPGKLADC 
Sbjct: 348 GVLKDAFSLWLNQNVQDAEKLAEIAISSAQRRLR--AAKKVVRKKLVSGPALPGKLADCG 405

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR+R  QA+LPLRGKILN      +++  + +I D+ 
Sbjct: 406 SQDLEKTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDIA 465

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG    S      LRY KV I+ DAD DG HIA+LL   F +    L++  H+++  P
Sbjct: 466 VALGIDPDSNDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMP 524

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+RI    +  YA DE  K+ IL+   K+ KGK  + RFKGLGEM  SQL+ET MD N 
Sbjct: 525 PLYRIDLNKEVFYALDENEKEAILDRL-KNKKGKPNVQRFKGLGEMNPSQLRETTMDPNT 583

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKA 667
           R L+++  +   +   DT + ++ L+  K 
Sbjct: 584 RRLVQLTYDLGEDQGSDTLELMDMLLDEKT 613


>gi|119471661|ref|ZP_01614046.1| DNA gyrase, subunit B (type II topoisomerase) [Alteromonadales
           bacterium TW-7]
 gi|119445440|gb|EAW26727.1| DNA gyrase, subunit B (type II topoisomerase) [Alteromonadales
           bacterium TW-7]
          Length = 808

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 227/581 (39%), Positives = 352/581 (60%), Gaps = 18/581 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I V
Sbjct: 2   SENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDDIFV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +G ++V DNGRGIPV  H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHLDGSVSVRDNGRGIPVSIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L +TV R+  +  Q ++ G+P +PL          GT + F P  + F + 
Sbjct: 121 SVVNALSEKLKLTVRREGKLHEQFYTMGVPDAPLAVIGD-SETTGTELRFWPSAETFTNL 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V    + ++E        + + F + GG++ +++    N
Sbjct: 180 -DFHYDILAKRLRELSFLNSGVSIILNDERE------ENKSDHFKYEGGIQAFVEYINRN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   +F    E+      +VE ++ W +     I  + N I   +GGTH +G R AL
Sbjct: 233 KTPIHKGVFHFTHER-VEDGISVEVSMQWNDAYQENIYCFTNNIPQRDGGTHLAGFRSAL 291

Query: 339 TRGIKKYA----ELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           TR +  +        + K   +   DD       ++SV + +P+F+ QTK KLVS + + 
Sbjct: 292 TRTLNNFMEKEGFNKKAKTTSNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKS 351

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE A+ + F  +L++NP++A  ++  +I+ S  R   RK R    RK A+    LPGKL
Sbjct: 352 AVEQAMAEKFTEFLLENPVDAKIVVGKIIDASRAREAARKAREMTRRKGAMDLAGLPGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 412 ADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 471

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC   R +Y  E LRY ++IIMTDADVDG+HI +LLLTFFY++M +++E+ ++
Sbjct: 472 ATLITALGCGIGRDEYNPEKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGYI 531

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613
           ++  PPL+++ +G +  Y  D+    + L     +      
Sbjct: 532 YIAQPPLYKVKKGKQERYIKDDPALVEYLTSLALNNAALYT 572



 Score =  133 bits (334), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G K+      ++    LE      K  I I R+KGLGEM  +QL ET MD + R +L
Sbjct: 711 IQRGEKT---KPVDNFVDALEWLITESKRGIYIQRYKGLGEMNPNQLWETTMDPDARRML 767

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R  FI+  A  + ++ 
Sbjct: 768 QVTIEDAVG----ADQLFATLMGDQVEPRRDFIETNALRVVNLD 807


>gi|194099990|ref|YP_002003129.1| DNA gyrase subunit B [Neisseria gonorrhoeae NCCP11945]
 gi|193935280|gb|ACF31104.1| DNA gyrase subunit B [Neisseria gonorrhoeae NCCP11945]
          Length = 871

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 232/634 (36%), Positives = 353/634 (55%), Gaps = 25/634 (3%)

Query: 5   SIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFA-NQSASDNYDASSIRILEGLEPVRMRPG 63
           +  L++   P     ++      +   +PA    +   + Y A SI++LEGLE VR RPG
Sbjct: 44  NTQLYAPSRPLFPQGADCFGGIAKSFQNPAKNMTEQKHEEYGADSIQVLEGLEAVRKRPG 103

Query: 64  MYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122
           MYIG T D   LHH+  EV+DNA+DE +AG+ + I V++  +  ++V DNGRG+P   HP
Sbjct: 104 MYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCDKITVTIHADHSVSVADNGRGMPTGIHP 163

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
           K   +S  E+I+T LHAGGKFDN++Y+ISGGLHGVG+SVVNALSD + +T+ R       
Sbjct: 164 K-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLHGVGVSVVNALSDWVTLTIYRDGKEHFV 222

Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
           +F RG    PL+      +K+GT + F    + FG+   +    L K  +  ++L+  V 
Sbjct: 223 RFVRGETEEPLKIVGD-SDKKGTTVRFLAGTETFGNI-EYSFDILAKRIRELSFLNNGVD 280

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
              + +++        + E F   GG+  ++Q     ++ +  +IF    EK G    +V
Sbjct: 281 IELTDERD-------GKHESFALSGGVAGFVQYMNRKKTPLHEKIFYAFGEKDG---MSV 330

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359
           E A+ W +     +  + N I   +GGTH + LR  +TR I  Y E  +   K  +    
Sbjct: 331 ECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTINSYIEANEVAKKAKVETAG 390

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD+      +LSV + +P+F+ QTK KLVS +    V   +      +L +NP EA  + 
Sbjct: 391 DDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVINQALTDFLEENPNEAKIIT 450

Query: 420 EWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
             +++ +  R   RK RE+ R+   +  L LPGKLADC +     +EL++VEGDSAGGSA
Sbjct: 451 GKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEKDPALSELYLVEGDSAGGSA 510

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537
            Q R+R  QA+LPL+GKILNV  A  EK+  +Q++  L+ ALG    + ++  E LRY +
Sbjct: 511 MQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLITALGAGIGKEEFNPEKLRYHR 570

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           +IIMTDADVDGAHI +LLLTFFY++M +L+E+ ++++  PPL++   G +  Y  DE  K
Sbjct: 571 IIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPPLYKAKYGKQERYLKDELEK 630

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
            + L          +   R      +  ++L +T
Sbjct: 631 DQWLLGLALEKAKIVSDGR-----TIEGAELADT 659



 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%)

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           ++ +G      +D +  +  L+      +  + I R+KGLGEM   QL ET MD   R L
Sbjct: 773 KLYKGENE---YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPTVRRL 829

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           L+V I   +       +    LMG + + R  FI+  A    ++  
Sbjct: 830 LKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 871


>gi|294138805|ref|YP_003554783.1| DNA gyrase subunit B [Shewanella violacea DSS12]
 gi|23307486|dbj|BAC16536.1| DNA topoisomerase chain B [Shewanella violacea]
 gi|293325274|dbj|BAJ00005.1| DNA gyrase, B subunit [Shewanella violacea DSS12]
          Length = 806

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 221/575 (38%), Positives = 350/575 (60%), Gaps = 17/575 (2%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + + 
Sbjct: 2   SENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCSEVI 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           +++  +  ++V D+GRGIPV+ HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG
Sbjct: 62  ITIHADNSVSVKDDGRGIPVDIHPE-EGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS++L +T+ R   ++ Q ++ G+P +P+++     +  GT + F P  + F  
Sbjct: 121 VSVVNALSEKLQLTIRRNGKLYEQFYTMGVPDAPIKEIGDATS-TGTELRFWPSHETFTT 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L+K  +  ++L+  V      +++  +       E F + GG+  ++     
Sbjct: 180 NIKFHFDILVKRVRELSFLNSGVGIRLIDERDNRD-------EFFQYQGGISAFVDYLNV 232

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++ ++F    E+      TVE A+ W +     I  + N I   +GGTH +G R A
Sbjct: 233 NKTAVNKDVFHFIQERDD--GITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRGA 290

Query: 338 LTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K   +   DD       ++SV + +P+F+ QTK KLVS + +  
Sbjct: 291 LTRNLNAYMEREGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSA 350

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454
           VE  + +    YL+++P EA  ++  +I+ S  R   RK R    RK A+    LPGKLA
Sbjct: 351 VEQTMGEKLGDYLMEHPNEARLIVGKIIDASRAREAARKAREMTRRKGALDLGGLPGKLA 410

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++ 
Sbjct: 411 DCQEKDPALSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 470

Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            L+ ALGC   R +Y  +  RY  ++IMTDADVDG+HI +LLLTFF+++M +LIE+ +++
Sbjct: 471 TLITALGCGIGRDEYDPDKTRYHNIVIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIY 530

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +  PPL+++ +G +  Y  DE    + L      G
Sbjct: 531 IAQPPLYKVKKGRQEQYLKDELALTEFLTNLALDG 565



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           + L       +  + I R+KGLGEM   QL ET MD   R +L V I   +         
Sbjct: 723 EALNWLMNDSRRGLYIQRYKGLGEMNPEQLWETTMDPETRRMLVVTIEDAIG----ADQL 778

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
              LMG + + R +FI+E A  + ++ 
Sbjct: 779 FTCLMGDQVEPRRQFIEENALNVANLD 805


>gi|149191879|ref|ZP_01870113.1| DNA gyrase subunit B [Vibrio shilonii AK1]
 gi|148834271|gb|EDL51274.1| DNA gyrase subunit B [Vibrio shilonii AK1]
          Length = 805

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 233/566 (41%), Positives = 345/566 (60%), Gaps = 17/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ N I V
Sbjct: 2   SENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCNDIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDNSVSVSDDGRGIPTEMHPE-EQVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS ++ +T+ R   I +Q +  G P +PL       +K GT I F P  + F + 
Sbjct: 121 SVVNALSKKVTLTIHRGGQIHTQTYHHGEPEAPLTVIGDT-DKTGTEIRFWPSEETFTNI 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V       +E        + + F F GG++ +++    N
Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLIDKRE------EDKMDHFMFEGGIQAFVEHLNTN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  +IF    E+      TVE A+ W +     I  + N I   +GGTH +G R AL
Sbjct: 233 KTPIIQKIFHFDNERDD--GITVEVAMQWNDGYQENIYCFTNNIPQRDGGTHLAGFRAAL 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  + +      K   +   DD       I+SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNTFMDKEGFSKKAKTATSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLAD 455
           E+A+ +    +LV+NP EA  +   +I+ +  R   RK      RK A+    LPGKLAD
Sbjct: 351 ESAMGEKLSEFLVENPGEAKIVCTKIIDAARARDAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  DE+   + 
Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMNQY 556



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G ++    +       LE   K  +  + + R+KGLGEM   QL ET MD   R ++
Sbjct: 708 IKRGERTQEVTN---FVDALEWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMM 764

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R  FI+E A  + ++ 
Sbjct: 765 QVTIEDAVG----ADQLFTTLMGDQVEPRRNFIEENALKVANLD 804


>gi|240118850|ref|ZP_04732912.1| DNA gyrase subunit B [Neisseria gonorrhoeae PID1]
          Length = 871

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 232/634 (36%), Positives = 353/634 (55%), Gaps = 25/634 (3%)

Query: 5   SIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFA-NQSASDNYDASSIRILEGLEPVRMRPG 63
           +  L++   P     ++      +   +PA    +   + Y A SI++LEGLE VR RPG
Sbjct: 44  NTQLYAPSRPLFPQGADCFGGIAKSFQNPAKNMTEQKHEEYGADSIQVLEGLEAVRKRPG 103

Query: 64  MYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122
           MYIG T D   LHH+  EV+DNA+DE +AG+ + I V++  +  ++V DNGRG+P   HP
Sbjct: 104 MYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCDKITVTIHADHSVSVADNGRGMPTGIHP 163

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
           K   +S  E+I+T LHAGGKFDN++Y+ISGGLHGVG+SVVNALSD + +T+ R       
Sbjct: 164 K-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLHGVGVSVVNALSDWVTLTIYRDGKEHFV 222

Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
           +F RG    PL+      +K+GT + F    + FG+   +    L K  +  ++L+  V 
Sbjct: 223 RFVRGETEEPLKIVGD-SDKKGTTVRFLAGTETFGNI-EYSFDILAKRIRELSFLNNGVD 280

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
              + +++        + E F   GG+  ++Q     ++ +  +IF    EK G    +V
Sbjct: 281 IELTDERD-------GKHESFALSGGVAGFVQYMNRKKTPLHEKIFYAFGEKDG---MSV 330

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359
           E A+ W +     +  + N I   +GGTH + LR  +TR I  Y E  +   K  +    
Sbjct: 331 ECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTINSYIEANEVAKKAKVETAG 390

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD+      +LSV + +P+F+ QTK KLVS +    V   +      +L +NP EA  + 
Sbjct: 391 DDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVINQALTDFLEENPNEAKIIT 450

Query: 420 EWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
             +++ +  R   RK RE+ R+   +  L LPGKLADC +     +EL++VEGDSAGGSA
Sbjct: 451 GKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEKDPALSELYLVEGDSAGGSA 510

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537
            Q R+R  QA+LPL+GKILNV  A  EK+  +Q++  L+ ALG    + ++  E LRY +
Sbjct: 511 MQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLITALGAGIGKEEFNPEKLRYHR 570

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           +IIMTDADVDGAHI +LLLTFFY++M +L+E+ ++++  PPL++   G +  Y  DE  K
Sbjct: 571 IIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPPLYKAKYGKQERYLKDELEK 630

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
            + L          +   R      +  ++L +T
Sbjct: 631 DQWLLGLALEKAKIVSDGR-----TIEGAELADT 659



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%)

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           ++ +G      +D +  +  L+      +  + I R+KGLGEM   QL ET MD   R L
Sbjct: 773 KLYKGENE---YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPTVRRL 829

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           L+V I   +       +    LMG + + R  FI+  A    ++  
Sbjct: 830 LKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 871


>gi|50083301|ref|YP_044811.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter sp.
           ADP1]
 gi|49529277|emb|CAG66989.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter sp.
           ADP1]
          Length = 822

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 228/581 (39%), Positives = 340/581 (58%), Gaps = 19/581 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85
                S +   Q+    YD+SSI++L GL+ VR RPGMYIG TD+   LHH+  EV+DNA
Sbjct: 2   SSESQSASPTEQTIEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNA 61

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AG+ + I V++  +  ++V DNGRGIP + HP+    S  E+ILT LHAGGKFD+
Sbjct: 62  IDEALAGHCDEIIVTIHEDESVSVSDNGRGIPTDIHPE-EGVSAAEVILTILHAGGKFDD 120

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +L +T+ R   I  Q++  G P  PL+   +     GT
Sbjct: 121 NSYKVSGGLHGVGVSVVNALSSKLQLTIHRAGQIHEQEYQHGDPQYPLKVVGETS-TTGT 179

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            + F P    F     F+   L +  +  ++L+  VK     ++   E         + +
Sbjct: 180 TVRFWPSGDTFSQTI-FNVDILARRLRELSFLNAGVKIVLRDERVNFE-------HIYAY 231

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GGL  +++   E ++ ++           G     VE A+ W +     +  + N I  
Sbjct: 232 EGGLSEFVKYINEGKNHLNDIFHFTADSDNGI---AVEVALQWNDSYQENVRCFTNNIPQ 288

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTRG+  Y E      K  +++  DD       I+SV + +P+F+ Q
Sbjct: 289 KDGGTHLAGFRAALTRGLNSYLENENILKKEKVNVSGDDAREGLTAIISVKVPDPKFSSQ 348

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441
           TK KLVS + +  VE A+   F  YL++NP  A  +   +I+ +  R   RK      RK
Sbjct: 349 TKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRK 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           +A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  
Sbjct: 409 SALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +K+ ++Q++  L+ ALGC   R +Y  + LRY K+IIMTDADVDG+HI +LLLTFF+
Sbjct: 469 ARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFF 528

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++M +L+E+ H+++  PPL+++ +G +  Y  D +  +  L
Sbjct: 529 RQMPELVERGHIYIAQPPLYKLKKGKQEQYIKDNDALETFL 569



 Score =  133 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 5/90 (5%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
             ++ ++  +  +  + I R+KGLGEM A QL ET MD + R +L+V I+  +    +  
Sbjct: 738 FHQVWQQILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPDNRHMLQVTIDDAI----EAD 793

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVGT 686
              + LMG   + R  FI+E A   D +  
Sbjct: 794 RMFSCLMGDDVEPRRAFIEENALNAD-IDA 822


>gi|145589083|ref|YP_001155680.1| DNA topoisomerase IV subunit B [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047489|gb|ABP34116.1| DNA topoisomerase IV subunit B [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 662

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 243/674 (36%), Positives = 357/674 (52%), Gaps = 44/674 (6%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
               +  Y  SSI++L+GLEPVR RPGMY   T      H+  EV+DNA DE + G+   
Sbjct: 2   ATRKTSEYSESSIQVLKGLEPVRQRPGMY---TRTDNPLHIIQEVLDNASDEALGGFGKH 58

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGG 153
           I V+L  +  ++V D+GRGIPV  HP       +EI+ T LHAGGKF+      Y  SGG
Sbjct: 59  ITVTLHTDSSVSVEDDGRGIPVGIHP-TEKLPVVEIVFTQLHAGGKFEKGTGGAYAFSGG 117

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRP 211
           LHGVG+SV NALS  L VTV R+  + +  F+ G  +  L+ +   +     GTR+   P
Sbjct: 118 LHGVGVSVTNALSKRLEVTVWREGQVSTLTFADGKVIEKLKTRASSKEDKSHGTRVRAWP 177

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           D K F   A      L+++ +SKA L   VK     +K         + + + +  GL+ 
Sbjct: 178 DSKYFDSAAIPMPE-LIRLLRSKAVLLPGVKVTLIQEKS-------GDSQTWQYAQGLRG 229

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVE---------WAIAWCEEN-PEITSYCNT 321
           YL   +         I   + E+  T  G  +         W ++W E+  P   SY N 
Sbjct: 230 YLNEAIAQAGHGPEVIPPFEGEQYATGNGEDDSFAEGEGAAWVVSWTEDGAPVRESYVNL 289

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFA 380
           I T  GGTHESGLR  L   +K + E+     + + ++ +D+   A  ILS  + +P+F 
Sbjct: 290 IPTPAGGTHESGLREGLFNAVKGFIEMHALQPKGVKLMPEDVFARASFILSAKVLDPQFQ 349

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQ K +L S DA R V    +   + +L Q+     KL + VI++++ R R  ++ E  +
Sbjct: 350 GQIKERLNSRDAVRLVSGYAKSALELWLNQHVDYGRKLADLVIKQAQARTRAGQKVEKKK 409

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
            + +  L  PGKL DC        E+F+VEGDSAGGSAK  RN+  QA+LPLRGK+LN  
Sbjct: 410 SSGVAVL--PGKLTDCESEDIAQNEIFLVEGDSAGGSAKMGRNKEYQAILPLRGKVLNTW 467

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLT 557
            A  +++  N ++ D+  A+G          D   LRY KV I++DADVDGAHI  LLLT
Sbjct: 468 EAERDRLFANNEVHDIAVAIGVDPHGLNDTPDLSNLRYGKVCILSDADVDGAHIQVLLLT 527

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHGKGK 611
            FY+    LI+  H+++  PPLFR+    +G K    +YA D    Q I ++ +K G  +
Sbjct: 528 LFYKHFPKLIDLGHIYISRPPLFRVDAPARGKKPAQKIYALDASELQAIEDKLRKDGVKE 587

Query: 612 --IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KAD 668
              +ISRFKGLGEM A QL +T ++ + R LL V +        +T  +++ LMG  ++ 
Sbjct: 588 TAWQISRFKGLGEMSAEQLWDTTLNPDTRRLLPVTLGAWTED--ETFKTMDMLMGKSESG 645

Query: 669 ERFKFIQERASFID 682
            R  +++ER + ++
Sbjct: 646 ARRDWLEERGNEVE 659


>gi|260906544|ref|ZP_05914866.1| DNA topoisomerase IV subunit B [Brevibacterium linens BL2]
          Length = 703

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 234/700 (33%), Positives = 340/700 (48%), Gaps = 63/700 (9%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            ++Y A  + +L GLE VR RPGMYIG TD + L H   E+IDNA+DE + G+   I + 
Sbjct: 3   EESYGARHLSVLSGLEAVRKRPGMYIGTTDSRGLMHCLWEIIDNAVDEALGGFGKSILIE 62

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L+ +G + V D+GRGIPV+  PK    + +E++LT LHAGGKF  S+Y  SGGLHGVG S
Sbjct: 63  LEPDGSVAVTDSGRGIPVDIEPK-TGLTGVEVVLTKLHAGGKFGGSSYAASGGLHGVGAS 121

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE----------------------K 198
           VVNALS  L V V R + +    F RG+P    +                          
Sbjct: 122 VVNALSARLDVEVTRGSKVHKMSFRRGVPGRFDDSSGQPGPDNPFEEFHEPTGLDVVRKA 181

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD----KEIAEK 254
            +   GTR+ +  DP+IF  KA FD   L++  +  A+L   ++          ++   +
Sbjct: 182 KKGVTGTRVQYWADPQIFLSKAQFDYQHLVERARQTAFLVPGLELRIEDRRGVARDETGE 241

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTH 298
                 E F F GG+  ++     +  +  +       +                K+   
Sbjct: 242 VIAERLEVFRFDGGITEFVDHLSIDPPMTDTWRLQDTGKFSETVPVLDSSGHLVSKEVER 301

Query: 299 RGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK---RA 354
              V+ A+ W         S+ N + T  GGTH +G   A  + ++K  E    K     
Sbjct: 302 EVGVDIALRWGTGYDTKVKSFVNVVSTPHGGTHLAGFEQASLKAMRKAVEANARKLKLGK 361

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             +  DD++     +++V + EP+F GQTK  L +   ++ V   +       L      
Sbjct: 362 DKLEKDDVLAGLTAVVTVQLAEPQFEGQTKEVLGTAAVRQIVAKTVERQLGDILSSTKRA 421

Query: 415 ATKL----LEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
             +     +E V+   + R+  R  +    RKTA+    LP KL DC  N    TELFIV
Sbjct: 422 EKQQAAVLMEKVVAELKSRISARTHKENQRRKTALEASSLPAKLYDCRDNGVENTELFIV 481

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           EGDSA G+AK ARN  +QA+ P+RGKILNV  A    +  N +   L+Q +G  +   + 
Sbjct: 482 EGDSAMGTAKAARNSDHQALFPIRGKILNVQKASLSDMLANVECAALIQVIGAGSGRSFD 541

Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI----TQG 585
            +  RY +VIIMTDADVDGAHI +LLLT F++ M  L+EQ  +F   PPL R+     +G
Sbjct: 542 IDAARYGRVIIMTDADVDGAHIRTLLLTLFFRYMKPLVEQGRVFAAVPPLHRVEVVTKRG 601

Query: 586 --TKSVYAHDEEHKQK-ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLR 642
                +Y + E   Q  + +  K     K  I R+KGLGEM A QL ET MD + RTL R
Sbjct: 602 TPNDVIYTYSEAELQALLKKLEKSKKTYKEPIQRYKGLGEMDADQLAETTMDPSMRTLRR 661

Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           V +       +  +++   LMG+    R +FI   A+ +D
Sbjct: 662 VTM----ADAEAAENTFELLMGSSVGPRKEFIVSGAAVLD 697


>gi|260913523|ref|ZP_05920001.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Pasteurella dagmatis
           ATCC 43325]
 gi|260632463|gb|EEX50636.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Pasteurella dagmatis
           ATCC 43325]
          Length = 806

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 234/565 (41%), Positives = 351/565 (62%), Gaps = 19/565 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           + +  +NY A+SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGYA 
Sbjct: 2   SNNTPENYGANSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYAK 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V D+GRGIPV+ HP+    S  E+I+T LHAGGKFD+++Y++SGGLH
Sbjct: 62  DITVTIHTDNSVSVQDDGRGIPVDIHPE-EGISAAEVIMTVLHAGGKFDDNSYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD+L +T+ RQ  +  Q +  G P +PL    +  ++ GT + F P P I
Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGKVHEQIYHLGEPEAPLAAIGET-DQTGTSVRFWPSPTI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   F+   L K  +  ++L+  V       +          ++ F++ GG++ +++ 
Sbjct: 180 FNNI-EFEYDILAKRLRELSFLNSGVSIKLFDKR-------NDRQDHFHYEGGIQAFVEY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              N++ I  + F   TEK G     VE ++ W +     +  + N I   +GGTH +G 
Sbjct: 232 LNRNKNPIHQKPFYFSTEKDGI---GVEVSMQWNDSFNENVYCFTNNIPQRDGGTHLAGF 288

Query: 335 RVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y E      K  ++   DD     V I+SV + +P+F+ QTK KLVS + 
Sbjct: 289 RGALTRSLNNYMENEGHNKKSKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEV 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451
           +  VE+ + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPG
Sbjct: 349 KSAVESVMNEYLQQYLLENPSDAKIIVGKIIDAARAREAARKAREMTRRKGALDLGGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++ 
Sbjct: 409 KLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSA 468

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALGC   R +Y  E LRY  +IIMTDADVDGAHI +LLLTFFY++M +LIE+ 
Sbjct: 469 EVGTLITALGCGIGRDEYNPEKLRYHSIIIMTDADVDGAHIRTLLLTFFYRQMPELIERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEE 595
           H+++  PPL+++ +G +  Y  D+E
Sbjct: 529 HVYIAQPPLYKVKKGKQEQYIKDDE 553



 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 5/89 (5%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ +E   K  +  + + R+KGLGEM   QL ET MD N R +L+V I   +       
Sbjct: 722 FEQAVEWLVKESRRGLMVQRYKGLGEMNPEQLWETTMDPNARRMLKVSIKDAV----AAD 777

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG + + R +FI+  A    ++ 
Sbjct: 778 QLFTTLMGDEVEPRREFIESNALHA-NLD 805


>gi|330827704|ref|YP_004390656.1| DNA gyrase subunit B [Aeromonas veronii B565]
 gi|328802840|gb|AEB48039.1| DNA gyrase subunit B [Aeromonas veronii B565]
          Length = 803

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 233/575 (40%), Positives = 353/575 (61%), Gaps = 19/575 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
           + + YD+S+I++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGY + I 
Sbjct: 2   SENTYDSSNIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGYCSDIL 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V +  +G ++V DNGRGIPV+ H +   +S  E+I+T LHAGGKFD+++Y++SGGLHGVG
Sbjct: 62  VKIHSDGSVSVRDNGRGIPVDMHEE-EGRSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D
Sbjct: 121 VSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPAIFSD 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      +++  E         F + GG+K +++   +
Sbjct: 180 TL-FHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------AHFCYEGGIKAFVEYLNQ 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G R A
Sbjct: 232 NKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTA 288

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  
Sbjct: 289 LTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTA 348

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454
           VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLA
Sbjct: 349 VEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLA 408

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++ 
Sbjct: 409 DCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVG 468

Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            L+ ALGC   R +Y  + LRY  +IIMTDADVDGAHI +LLLTFFY++M ++IE+ +++
Sbjct: 469 TLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGAHIRTLLLTFFYRQMPEIIERGYVY 528

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +  PPL+++ +G +  Y  DE+   +        G
Sbjct: 529 IAQPPLYKVKKGKQEQYLKDEDALLQYQTAMALDG 563



 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G K        +  + +E     GK  I I R+KGLGEM   QL ET MD   R +L
Sbjct: 706 IKRGEKV---KPVANFVEAVEWLMGEGKRGIYIQRYKGLGEMNPDQLWETTMDPEARRML 762

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           RV I+  +          + LMG   + R  FI+  A  + ++ 
Sbjct: 763 RVTIDDAVG----ADQLFSTLMGDAVEPRRDFIETNALRVANLD 802


>gi|240849719|ref|YP_002971107.1| DNA gyrase subunit B [Bartonella grahamii as4aup]
 gi|240266842|gb|ACS50430.1| DNA gyrase subunit B [Bartonella grahamii as4aup]
          Length = 810

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 235/572 (41%), Positives = 340/572 (59%), Gaps = 16/572 (2%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYA 94
            + + SD+Y ASSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+A
Sbjct: 6   TSAAQSDDYGASSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHA 65

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
            L+ V+L  +G  +V DNGRGIP + HP     S  E+I+T LHAGGKFD ++Y++SGGL
Sbjct: 66  TLVNVTLHADGSCSVRDNGRGIPTDIHP-TEGVSAAEVIMTQLHAGGKFDQNSYKVSGGL 124

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS  L + + R   I    F+ G+  +PL+       + GT I F P  +
Sbjct: 125 HGVGVSVVNALSVWLKLQIRRNGKIHEISFTHGVADAPLKVIGDCDKESGTEIRFLPSSE 184

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
            F     FD   L +  +  A+L+  V      ++    K         ++ GGL  +++
Sbjct: 185 TFT-MVEFDFETLERRLRELAFLNSGVYILLVDERHADTKSVE-----LHYEGGLTEFVK 238

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +++  +        +EK G    +V+ A+ W +    ++  + N I   +GGTH  G
Sbjct: 239 YIDQSKKALLDNPIYIASEKDG---MSVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLIG 295

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR I  YAE +    K  +++  DD       ILSV + +P+F+ QTK KLVS +
Sbjct: 296 FRSALTRQINGYAESSGIAKKEKVNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSE 355

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VEN + +    +L ++P EA  L+  V+E +  R   RK RE   RK A+    LP
Sbjct: 356 VRPIVENLVNEGLSVWLEEHPHEAKLLISKVVEAATAREAARKARELTRRKGALDITSLP 415

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +E+FIVEGDSAGGSAK  R+R NQA+LPLRGKILNV  A  +++ ++
Sbjct: 416 GKLADCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERARFDRMLSS 475

Query: 511 QQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
             I  L+ ALG          + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE+
Sbjct: 476 DMIGTLITALGTSIGKDEFSPDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIER 535

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
            HL++  PPL+++++G  S Y  +E   ++ L
Sbjct: 536 GHLYIAQPPLYKVSRGKSSQYIKNEAAFEEFL 567



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 8/119 (6%)

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           I Q  + +  PP+    +               +LE    +GK  I + R+KGLGEM A 
Sbjct: 699 ISQNFIDIYHPPVLLRRKDKTERIFGPM----SLLESIFTNGKKGITLQRYKGLGEMNAE 754

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           QL ET +D N R+LL+V+IN       D     ++LMG + + R  FIQ+ A  + ++ 
Sbjct: 755 QLWETTLDPNARSLLQVKINDAT----DADSLFSRLMGDEVEPRRIFIQDNALSVANLD 809


>gi|254190689|ref|ZP_04897196.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei Pasteur
           52237]
 gi|157938364|gb|EDO94034.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei Pasteur
           52237]
          Length = 660

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 242/673 (35%), Positives = 359/673 (53%), Gaps = 41/673 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +  +  Y  +SI++L+GLEPV+ RPGMY   T  +   H+  EVIDNA DE + G+ 
Sbjct: 1   MSTKKPAAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGFG 57

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151
             I V+L  +  ++V D+GRGIP   HP+      +EI+ T LHAGGKFD      Y  S
Sbjct: 58  KQITVTLHPDQSVSVEDDGRGIPFGLHPE-EKVPVVEIVFTRLHAGGKFDKAKGGAYTFS 116

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITF 209
           GGLHGVG+SV NAL+  L VTV R   I    F+ G  + PL  +   R   K GTR+T 
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGRIAQLGFADGDVVKPLATQGAGRGEKKSGTRVTV 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P+PK F          L ++ +SKA L   V+     +K         E++ + +  GL
Sbjct: 177 WPNPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVVLVNEK-------TGERQSWKYDDGL 228

Query: 270 KTYLQTKLENRSLISSEI------FTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTI 322
           + YL  ++    L+           +   +          W +AW EE      SY N I
Sbjct: 229 RGYLLDEMNGSELLIPLFEGERFADSRSGDDTFAEGEGASWVVAWSEEGSLVRESYVNLI 288

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAG 381
            T  GGTHESGLR  L + +K + EL     + + ++++D+      +LS  + +P+F G
Sbjct: 289 PTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQG 348

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           Q K +L S DA + V +  R   + +L Q+     KL E VI++++ R R  ++ E  + 
Sbjct: 349 QIKERLNSRDAVKLVSSFTRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKVEKKKS 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +  L  PGKL DC        ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN   
Sbjct: 409 SGVAVL--PGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWE 466

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQY---REEDLRYEKVIIMTDADVDGAHIASLLLTF 558
              +++  N ++ D+  A+G             +LRY K+ I++DADVDGAHI  LLLT 
Sbjct: 467 TERDRLFANNEVHDISVAIGVDPHGPDDSVDVSNLRYGKICILSDADVDGAHIQVLLLTL 526

Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KG 610
           F++    LIE+ H+F+  PPLFR+    +G K    +YA DE   + IL++ +K G  + 
Sbjct: 527 FFKHFPQLIERGHVFVARPPLFRVDAPARGKKPAQKLYALDEGELETILDKLRKDGVRES 586

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669
           +  ISRFKGLGEM A QL +T M+ + R L+ V +       + T   +  LMG  +A  
Sbjct: 587 QWTISRFKGLGEMSAEQLWDTTMNPDTRRLMPVAL--GELDFEATVARMTMLMGKGEAAA 644

Query: 670 RFKFIQERASFID 682
           R  +++E+ + ++
Sbjct: 645 RRNWLEEKGNEVE 657


>gi|117918471|ref|YP_867663.1| DNA gyrase subunit B [Shewanella sp. ANA-3]
 gi|117610803|gb|ABK46257.1| DNA gyrase subunit B [Shewanella sp. ANA-3]
          Length = 805

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 225/582 (38%), Positives = 346/582 (59%), Gaps = 18/582 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I 
Sbjct: 2   SENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTDIT 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           +++  +G ++V D+GRGIPV  HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG
Sbjct: 62  ITIHVDGSVSVRDDGRGIPVAIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS +L +T+ R+  +  Q ++ G+P  P++         GT I F P  + F D
Sbjct: 121 VSVVNALSKKLQLTIRREGKVHEQFYTHGVPDEPIKVIGDATK-TGTEIRFWPSEETFSD 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      +++        + E F + GG+  ++     
Sbjct: 180 V-EFHFEILAKRVRELSFLNSGVGIRLVDERDN-------KNEFFKYEGGISAFVDYLNR 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++ ++F    E+      TVE A+ W +     I  + N I   +GGTH +G R A
Sbjct: 232 NKTPVNKDVFHFMQERDD--GITVEVAMQWNDGYQESIFCFTNNIPQRDGGTHLAGFRSA 289

Query: 338 LTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K   +   DD       ++SV + +P+F+ QTK KLVS + +  
Sbjct: 290 LTRNLNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAA 349

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454
           VE  + +  + YL++NP +A  ++  +++ +  R   RK R    RK A+    LPGKLA
Sbjct: 350 VEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLA 409

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++ 
Sbjct: 410 DCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 469

Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            L+ ALGC   R +Y  +  RY  +IIMTDADVDG+HI +LLLTFF+++M +LIE+ +++
Sbjct: 470 TLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVY 529

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615
           +  PPLF++ +G +  Y  DE    + L      G       
Sbjct: 530 IAQPPLFKVKKGKQEQYLKDEAALTQYLTTQALDGTSIYPSQ 571



 Score =  133 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           + L+      K  + I R+KGLGEM   QL ET MD   R +L+V I+  +         
Sbjct: 722 EALDWTIGEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVG----ADQL 777

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
              LMG + + R  FI+  A  + ++ 
Sbjct: 778 FTCLMGDQVEPRRDFIEANALNVANLD 804


>gi|163867345|ref|YP_001608539.1| DNA gyrase subunit B [Bartonella tribocorum CIP 105476]
 gi|161016986|emb|CAK00544.1| DNA gyrase subunit B [Bartonella tribocorum CIP 105476]
          Length = 816

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 236/582 (40%), Positives = 342/582 (58%), Gaps = 16/582 (2%)

Query: 26  SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDN 84
           S EI       + +  D+Y A+SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN
Sbjct: 2   SDEITSPTQSTSPTKGDDYGAASIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDN 61

Query: 85  AMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144
           A+DE +AG+A L+ V+L  +G  +V DNGRGIP + HP     S  E+I+T LHAGGKFD
Sbjct: 62  AIDEALAGHATLVNVTLHADGSCSVRDNGRGIPTDIHP-TEGISAAEVIMTQLHAGGKFD 120

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS  L + + R   I    F+ G+  +PL+       + G
Sbjct: 121 QNSYKVSGGLHGVGVSVVNALSVWLKLQIRRNGKIHEISFTHGVADAPLKVVGDCDQESG 180

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I F P  + F     FD   L +  +  A+L+  V      ++    K         +
Sbjct: 181 TEIRFLPSSETFT-MVEFDFETLERRLRELAFLNSGVHILLVDERHADIKAVE-----LH 234

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   +++  +        +EK G    +V+ A+ W +    ++  + N I 
Sbjct: 235 YEGGLIEFVKYIDQSKKALLDTPIYIASEKDG---MSVDVALWWNDSYHEKVLCFTNNIP 291

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH  G R ALTR I  YAE +    K  +++  DD       ILSV + +P+F+ 
Sbjct: 292 QRDGGTHLIGFRSALTRQINGYAESSGIAKKEKVNLTGDDCREGLTAILSVKVPDPKFSS 351

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTK KLVS + +  VEN + +    +L ++P EA  L+  V+E +  R   RK RE   R
Sbjct: 352 QTKDKLVSSEVRPIVENLVNEGLSTWLEEHPNEAKLLISKVVEAATAREAARKARELTRR 411

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +E+FIVEGDSAGGSAK  R+R NQA+LPLRGKILNV 
Sbjct: 412 KGALDITSLPGKLADCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVE 471

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
            A  +++ ++  I  L+ ALG          + LRY K+IIMTDADVDGAHI +LLLTFF
Sbjct: 472 RARFDRMLSSDMIGTLITALGTSIGKDEFSPDKLRYHKIIIMTDADVDGAHIRTLLLTFF 531

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +++M +LIE+ HL++  PPL+++++G  S Y  +E   ++ L
Sbjct: 532 FRQMPELIERGHLYIAQPPLYKVSRGKSSQYIKNEAAFEEFL 573



 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 8/109 (7%)

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL    +               +LE    +GK  I + R+KGLGEM A QL ET +D N
Sbjct: 715 PPLLLRRKDKTERIFGPM----SLLESIFTNGKKGITLQRYKGLGEMNAEQLWETTLDPN 770

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            R+LL+V+IN       D     ++LMG + + R  FIQ+ A  + ++ 
Sbjct: 771 ARSLLQVKINDAT----DADSLFSRLMGDEVEPRRIFIQDNALSVANLD 815


>gi|309781095|ref|ZP_07675833.1| DNA topoisomerase IV, B subunit [Ralstonia sp. 5_7_47FAA]
 gi|308920161|gb|EFP65820.1| DNA topoisomerase IV, B subunit [Ralstonia sp. 5_7_47FAA]
          Length = 661

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 255/673 (37%), Positives = 360/673 (53%), Gaps = 45/673 (6%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           S +  Y  SSI++L+GLEPV+ RPGMY   T      H+  EVIDN+ DE + GY  LI 
Sbjct: 2   SKTSQYSESSIKVLKGLEPVKQRPGMY---TRTDNPLHIVQEVIDNSADEALGGYGKLIA 58

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLH 155
           V+L  +G ++V D+ RGIPV  HP+      +EI+ T LHAGGKFD      Y  SGGLH
Sbjct: 59  VTLHRDGSVSVEDDARGIPVGIHPE-EGVPVVEIVYTRLHAGGKFDKGRGGAYAFSGGLH 117

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--LEKKEKVRNKRGTRITFRPDP 213
           GVG+SV NALS  L VTV R   + +  FS G  + P    K E+   K GTR+   PD 
Sbjct: 118 GVGVSVTNALSTRLEVTVWRDGNVSTLAFSGGDVIEPLTTRKAERGEKKSGTRVRAWPDA 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F  +     A L ++ +SKA L   VK   + +K         E  E+ +  GL+ YL
Sbjct: 178 KYFDSEN-IPLAELQRLLRSKAVLLPGVKVTLTLEK-------TGETLEWQYDQGLRGYL 229

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVE----------WAIAWCEENPE-ITSYCNTI 322
              L   S     I   + E         E          W +AW EE      SY N I
Sbjct: 230 VESLAQGSGAEPVIPLFEGEHFADPDKPGEEGFAFGEGASWVVAWTEEGSPVRESYVNLI 289

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFAG 381
            T  GGTHESGLR  L + +K + E+     + + ++S+D+   A  +LS  + +P+F G
Sbjct: 290 PTPAGGTHESGLREGLFQAVKSFVEMHALLPKGVKLMSEDVFARASFVLSAKVLDPQFQG 349

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           Q K +L S DA R V    R   + +L Q+     KL E VI++++ R R  ++ E  + 
Sbjct: 350 QIKERLNSRDAVRLVSTFSRPALELWLNQHVDHGKKLAELVIKQAQARTRAAQKVEKKKG 409

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +  L  PGKL DC  +     ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN   
Sbjct: 410 SGVAVL--PGKLTDCESDDVTRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTWE 467

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTF 558
              +++  N ++ D+  A+G          D   LRY K+ I++DADVDGAHI  LLLT 
Sbjct: 468 TERDRLFANNEVHDIAVAIGVDPHGPNDTVDLSGLRYGKICILSDADVDGAHIQVLLLTL 527

Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KG 610
           F++    LI++ H+ +  PPL+R+    +G K    +YA D+   + I ++ +K G   G
Sbjct: 528 FFKHFPQLIDRGHVCVARPPLYRVDAPARGKKPAQKLYALDDGELEAIEDKLRKDGVKDG 587

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669
             +ISRFKGLGEM A QL ET M+ + R LL V + +       T + +N LMG  +A  
Sbjct: 588 AWQISRFKGLGEMSAEQLWETTMNPDTRRLLPVALGELGQD--QTINMMNMLMGKGEAGA 645

Query: 670 RFKFIQERASFID 682
           R  +++ R + ++
Sbjct: 646 RRTWLEARGNEVE 658


>gi|171317650|ref|ZP_02906835.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia ambifaria MEX-5]
 gi|171097178|gb|EDT42028.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia ambifaria MEX-5]
          Length = 660

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 245/676 (36%), Positives = 362/676 (53%), Gaps = 47/676 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +  S  Y  +SI++L+GLEPV+ RPGMY   T  +   H+  EVIDNA DE + GY 
Sbjct: 1   MSTKKPSAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYG 57

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151
             I V+L  +  ++V D+GRGIP   HP+      +EI+ T LHAGGKFD      Y  S
Sbjct: 58  KQIIVTLHTDQSVSVEDDGRGIPFGMHPE-EGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITF 209
           GGLHGVG+SV NAL+  L VTV R   I    F+ G  + PL  +   R   K GTR+  
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKIAELGFADGDVVKPLATQGAGRGEKKSGTRVQV 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P+PK F          L ++ +SKA L   V+     +K         E++ + +  GL
Sbjct: 177 WPNPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVVLVNEK-------TGERQTWKYEDGL 228

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE---------WAIAWCEENP-EITSYC 319
           + YL  ++    L+       + E+    R   E         W +AW EE      SY 
Sbjct: 229 RGYLLDEMNGSELLIP---LFEGERFADARSADETFAEGEGASWVVAWSEEGSLVRESYV 285

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPE 378
           N I T  GGTHESGLR  L + +K + EL     + + ++++D+      +LS  + +P+
Sbjct: 286 NLIPTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQ 345

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
           F GQ K +L S DA + V +  R   + +L Q+     KL E VI++++ R R  ++ E 
Sbjct: 346 FQGQIKERLNSRDAVKLVSSFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKVEK 405

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +  L  PGKL DC        ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN
Sbjct: 406 RKSSGVAVL--PGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLN 463

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLL 555
              A  +++  N ++ D+  A+G    S        +LRY K+ I++DADVDG+HI  LL
Sbjct: 464 TWEAERDRLFANNEVHDISVAIGVDPHSPDETVDLSNLRYGKICILSDADVDGSHIQVLL 523

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG- 608
           LT F++    LIE+ H+ +  PPLFR+    +G K    +YA DE   +  L++ +K G 
Sbjct: 524 LTLFFKHFPQLIERGHVHVARPPLFRVDAPARGKKPAQKLYALDEGELEATLDKLRKDGV 583

Query: 609 -KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-K 666
            + +  ISRFKGLGEM A QL +T M+ + R L+ V++       + T   +  LMG  +
Sbjct: 584 RETQWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKL--GELDYEATVARMTMLMGKGE 641

Query: 667 ADERFKFIQERASFID 682
           A  R  +++E+ + ++
Sbjct: 642 AAARRGWLEEKGNDVE 657


>gi|186476877|ref|YP_001858347.1| DNA topoisomerase IV subunit B [Burkholderia phymatum STM815]
 gi|184193336|gb|ACC71301.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia phymatum STM815]
          Length = 661

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 242/674 (35%), Positives = 359/674 (53%), Gaps = 42/674 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +  +  Y  +SI++L+GLEPV+ RPGMY   T  +   H+  EVIDNA DE + GY 
Sbjct: 1   MSTKKPNAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYG 57

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151
             I V+L  +  ++V D+GRGIP   HP+      +EI+ T LHAGGKFD      Y  S
Sbjct: 58  RQITVTLHADHSVSVEDDGRGIPFGMHPE-ERVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK--EKVRNKRGTRITF 209
           GGLHGVG+SV NALS  L VTV R   +    FS G  + PL+ +   K   K GTR+T 
Sbjct: 117 GGLHGVGVSVTNALSTRLDVTVWRDGKVAELSFSHGDVIKPLQVRAATKADKKSGTRVTA 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
             DPK F          L ++ +SKA L   V+     +K         E++ + +  GL
Sbjct: 177 WADPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVVLINEK-------TGERQSWKYEDGL 228

Query: 270 KTYLQTKLENRSLISSEIFTGKT-------EKKGTHRGTVEWAIAWCEENP-EITSYCNT 321
           + YL   +    L+       +        E+         W +AW EE P    SY N 
Sbjct: 229 RGYLMEGMAGSDLLIPLFEGERYAESSRSNEETFAEGEGAAWVVAWSEEGPLTRESYVNL 288

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFA 380
           I T  GGTHE+GLR  L + +K + EL     + + ++++D+      +LS  + +P+F 
Sbjct: 289 IPTPAGGTHEAGLRDGLFQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQ 348

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQ K +L S DA + V +  R   + +L Q+     KL + VI++++ R R  ++ E  +
Sbjct: 349 GQIKERLNSRDAVKLVSSFARPALELWLNQHVEHGKKLADLVIKQAQARTRAGQKVEKRK 408

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
            + +  L  PGKL DC        ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN  
Sbjct: 409 SSGVAVL--PGKLTDCESTEIGRNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTW 466

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLLT 557
               +++  N ++ D+  A+G    +        +LRY K+ I++DADVDG+HI  LLLT
Sbjct: 467 ETERDRLFANNEVHDISVAIGVDPHNPDDTVDLSNLRYGKICILSDADVDGSHIQVLLLT 526

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--K 609
            F++    LIE+ H+ +  PPLFR+    +G K    +YA DE   + IL++ +K G  +
Sbjct: 527 LFFKHFPQLIERGHVHVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDGVRE 586

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KAD 668
            +  ISRFKGLGEM A QL +T M+ + R L  V + +       T   +  LMG  +A 
Sbjct: 587 SQWSISRFKGLGEMSAEQLWDTTMNPDTRRLSPVALGELDFDATVT--RMTMLMGKGEAA 644

Query: 669 ERFKFIQERASFID 682
            R  +++E+ + ++
Sbjct: 645 SRRSWLEEKGNQVE 658


>gi|184156322|ref|YP_001844661.1| Type IIA topoisomerase [Acinetobacter baumannii ACICU]
 gi|183207916|gb|ACC55314.1| Type IIA topoisomerase (DNA gyrase/topo II) [Acinetobacter
           baumannii ACICU]
          Length = 822

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 228/581 (39%), Positives = 343/581 (59%), Gaps = 19/581 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85
                S +   Q+    YD+SSI++L GL+ VR RPGMYIG TD+   LHH+  EV+DNA
Sbjct: 2   SSESQSASQTEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNA 61

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AG+ + I V++  +  ++V DNGRGIP + HP+    S  E+ILT LHAGGKFD+
Sbjct: 62  IDEALAGHCDEIIVTIHEDESVSVSDNGRGIPTDIHPE-EGVSAAEVILTILHAGGKFDD 120

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +LH+T+ R   I  Q++  G P  PL    +  +  GT
Sbjct: 121 NSYKVSGGLHGVGVSVVNALSSKLHLTIYRAGQIHEQEYHHGDPQYPLRVIGET-DNTGT 179

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            + F P  + F     F+   L +  +  ++L+  V+     ++   E         + +
Sbjct: 180 TVRFWPSAETFSQTI-FNVEILARRLRELSFLNAGVRIVLRDERINLE-------HVYDY 231

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GGL  +++   E ++ ++           G     VE A+ W +     +  + N I  
Sbjct: 232 EGGLSEFVKYINEGKNHLNEIFHFTADADNGI---AVEVALQWNDSYQENVRCFTNNIPQ 288

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTRG+ +Y E      K  +++  DD       I+SV + +P+F+ Q
Sbjct: 289 KDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQ 348

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441
           TK KLVS + +  VE A+   F  YL++NP  A  +   +I+ +  R   RK      RK
Sbjct: 349 TKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRK 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           +A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  
Sbjct: 409 SALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +K+ ++Q++  L+ ALGC   R +Y  + LRY K+IIMTDADVDG+HI +LLLTFF+
Sbjct: 469 ARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFF 528

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++M +L+E+ H+++  PPL+++ +G +  Y  D +  +  L
Sbjct: 529 RQMPELVERGHIYIAQPPLYKLKKGKQEQYIKDNDALETYL 569



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 17/126 (13%)

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           +  + LIE    +L         +G + +   +     ++ +   +  +  + I R+KGL
Sbjct: 714 KSWFKLIEDG-AYL--------QKGDRRIQVAN---FHQVWQHILQDSRRGMMIQRYKGL 761

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GEM A QL ET MD   R +L+V I+  +    +     + LMG   + R  FI+E A  
Sbjct: 762 GEMNAEQLWETTMDPENRNMLQVTIDDAI----EADRMFSCLMGDDVEPRRAFIEENALN 817

Query: 681 IDDVGT 686
            D +  
Sbjct: 818 AD-IDA 822


>gi|269799058|gb|ACZ43807.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 781

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 229/578 (39%), Positives = 352/578 (60%), Gaps = 18/578 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
           + +NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I 
Sbjct: 2   SENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCTDIV 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +G ++V D+GRGIPV+ H +    S  E+ILT LHAGGKFD+++Y++SGGLHGVG
Sbjct: 62  VTIHDDGSVSVSDDGRGIPVDIHEE-EGVSAAEVILTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS++L +T+ R   I +Q +  G+P  P+ +   V +  GT + F P  + F +
Sbjct: 121 VSVVNALSEKLELTIFRHGKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFWPSHETFTN 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++E        + + F + GG+K ++     
Sbjct: 180 TL-FHYDILAKRLRELSFLNSGVSIKLIDERED------GKSDHFVYEGGIKAFVDYLNV 232

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ I+ + F    E++     TVE A+ W +     I  + N I   +GGTH +G R A
Sbjct: 233 NKTPINKDAFHFSVERED--GITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGA 290

Query: 338 LTRGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           LTR +  Y E     +  ++ +   DD       ++SV + +P+F+ QTK KLVS + + 
Sbjct: 291 LTRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKS 350

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKL 453
            VE A+ +    YL++NP EA+ ++  +I+ S  R   RK      RK A+    LPGKL
Sbjct: 351 AVEQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKARDMTRRKGALDLAGLPGKL 410

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 411 ADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 470

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ A+GC   R +Y  +  RY ++IIMTDADVDG+HI +LLLTFF+++M +LIE+ ++
Sbjct: 471 ATLITAMGCGIGRDEYNPDKTRYHQIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYI 530

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           ++  PPL+++ +G +  Y  D+    + L        G
Sbjct: 531 YIAQPPLYKMKKGKQERYIKDDADLTQYLTTIALDDAG 568



 Score = 95.6 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 7/81 (8%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G KS    +     + L       K    I R+KGLGEM  SQL ET MD   R +L
Sbjct: 708 IKRGEKSREVTN---FVEALNWLMAESKRGSYIQRYKGLGEMNPSQLWETTMDPETRRML 764

Query: 642 RVEINKDLNSLKDTQDSINKL 662
           +V I   +            L
Sbjct: 765 QVRIEDAV----AADQLFTTL 781


>gi|329120357|ref|ZP_08249024.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327462312|gb|EGF08638.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 721

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 253/677 (37%), Positives = 355/677 (52%), Gaps = 37/677 (5%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
            + + A  S +  Y  SSI +L+GLEPV+ RPGMY   T   +  H+  EVIDNA DE +
Sbjct: 54  SARSDAAMSRNSQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEAL 110

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST--- 147
            G+A+ IEV +  +G L+V DNGRGIPV  HP       +E++ T LHAGGKF+  +   
Sbjct: 111 GGFADRIEVEIHADGSLSVRDNGRGIPVGIHP-TEGLPVIELVFTRLHAGGKFNKKSGEG 169

Query: 148 -YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGT 205
            Y  SGGLHGVG+SV NALS  L VTV R+  I    FS G  + PL +  K      GT
Sbjct: 170 AYAFSGGLHGVGVSVTNALSTRLEVTVKREGKIHRIAFSGGDVIEPLHEAGKCAAKDSGT 229

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            +   PD K F     +  A L ++ ++KA L   V    +      +    P+ + +++
Sbjct: 230 EVRVWPDGKYFESPN-YSIAELERLLRAKAVLLPGVTVSLT---RPVKGEAQPQTQVWHY 285

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE-----WAIAWCEENPE-ITSYC 319
           P GLK YL   +                  G +    E     +A+ W EE      SY 
Sbjct: 286 PEGLKGYLNDLISEAQEAVPLFACENYLSDGHNGDFSEGEGAAFALTWLEEGSCANESYV 345

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPE 378
           N I T  GGTHE+GL+ A+ + +  +  L     R + + SDD+      +LS  + +P+
Sbjct: 346 NLIPTPLGGTHEAGLKQAVFQAVNNFINLHNLLPRGVKVQSDDVFGKVAFVLSARVLDPQ 405

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
           F GQTK KL + DA + V     DP + +L QN     K+ E  I +++ R+R    +++
Sbjct: 406 FQGQTKDKLTNRDALKLVAAVSGDPLELWLNQNVEYGKKIAELAIRQAQARMRSV--KKI 463

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            +K       LPGKL DC        ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN
Sbjct: 464 EKKKGSGVAVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLN 523

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLL 555
                 +++  N +I D+  A+G    S     D   LRY K+ I++DADVDG+HI  LL
Sbjct: 524 SFEVHPDQLFGNAEIHDISVAIGVDPHSANDSPDLSGLRYGKIAILSDADVDGSHIQVLL 583

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHG 608
           LT FY+    LI   H+++  PPLFR+    QG     +  YA D+     ILE  +K G
Sbjct: 584 LTLFYRHFPKLIADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDGILERLQKEG 643

Query: 609 KGK--IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT- 665
             +    ISRFKGLGEM   QLK+T M  + R LLRV I +   + ++T     KLMG  
Sbjct: 644 VKETAYSISRFKGLGEMNPDQLKDTTMHPDTRRLLRVAIPEG--AGEETYGIFVKLMGKG 701

Query: 666 KADERFKFIQERASFID 682
           +A  R  +++      +
Sbjct: 702 EAAARRSWMEREGDTAE 718


>gi|169794210|ref|YP_001712003.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter
           baumannii AYE]
 gi|215481765|ref|YP_002323947.1| DNA gyrase, B subunit [Acinetobacter baumannii AB307-0294]
 gi|294839208|ref|ZP_06783891.1| DNA gyrase, B subunit [Acinetobacter sp. 6013113]
 gi|294857145|ref|ZP_06794914.1| DNA gyrase, B subunit [Acinetobacter sp. 6013150]
 gi|301512866|ref|ZP_07238103.1| DNA gyrase, B subunit [Acinetobacter baumannii AB058]
 gi|169147137|emb|CAM84996.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter
           baumannii AYE]
 gi|213988939|gb|ACJ59238.1| DNA gyrase, B subunit [Acinetobacter baumannii AB307-0294]
          Length = 822

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 228/581 (39%), Positives = 343/581 (59%), Gaps = 19/581 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85
                S +   Q+    YD+SSI++L GL+ VR RPGMYIG TD+   LHH+  EV+DNA
Sbjct: 2   SSESQSASQTEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNA 61

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AG+ + I V++  +  ++V DNGRGIP + HP+    S  E+ILT LHAGGKFD+
Sbjct: 62  IDEALAGHCDEIIVTIHEDESVSVSDNGRGIPTDIHPE-EGVSAAEVILTILHAGGKFDD 120

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +LH+T+ R   I  Q++  G P  PL    +  +  GT
Sbjct: 121 NSYKVSGGLHGVGVSVVNALSSKLHLTIYRAGQIHEQEYHHGDPQYPLRVIGET-DNTGT 179

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            + F P  + F     F+   L +  +  ++L+  V+     ++   E         + +
Sbjct: 180 TVRFWPSAETFSQTI-FNVEILARRLRELSFLNAGVRIVLRDERINLE-------HVYDY 231

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GGL  +++   E ++ ++           G     VE A+ W +     +  + N I  
Sbjct: 232 EGGLSEFVKYINEGKNHLNEIFHFTADADNGI---AVEVALQWNDSYQENVRCFTNNIPQ 288

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTRG+ +Y E      K  +++  DD       I+SV + +P+F+ Q
Sbjct: 289 KDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQ 348

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441
           TK KLVS + +  VE A+   F  YL++NP  A  +   +I+ +  R   RK      RK
Sbjct: 349 TKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRK 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           +A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  
Sbjct: 409 SALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +K+ ++Q++  L+ ALGC   R +Y  + LRY K+IIMTDADVDG+HI +LLLTFF+
Sbjct: 469 ARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFF 528

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++M +L+E+ H+++  PPL+++ +G +  Y  D +  +  L
Sbjct: 529 RQMPELVERGHIYIAQPPLYKLKKGKQEQYIKDNDALETYL 569



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 17/126 (13%)

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           +  + LIE    +L         +G + +   +     ++ +   +  +  + I R+KGL
Sbjct: 714 KSWFKLIEDG-AYL--------QKGDRRIQVAN---FHQVWQHILQDSRRGMMIQRYKGL 761

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GEM A QL ET MD   R +L+V I+  +    +     + LMG   + R  FI+E A  
Sbjct: 762 GEMNAEQLWETTMDPENRNMLQVTIDDAI----EADRMFSCLMGDDVEPRRAFIEENALN 817

Query: 681 IDDVGT 686
            D +  
Sbjct: 818 AD-IDA 822


>gi|213155387|ref|YP_002317432.1| DNA gyrase, B subunit [Acinetobacter baumannii AB0057]
 gi|260558096|ref|ZP_05830307.1| DNA gyrase, B subunit [Acinetobacter baumannii ATCC 19606]
 gi|294842426|ref|ZP_06787109.1| DNA gyrase, B subunit [Acinetobacter sp. 6014059]
 gi|301345942|ref|ZP_07226683.1| DNA gyrase, B subunit [Acinetobacter baumannii AB056]
 gi|301594683|ref|ZP_07239691.1| DNA gyrase, B subunit [Acinetobacter baumannii AB059]
 gi|213054547|gb|ACJ39449.1| DNA gyrase, B subunit [Acinetobacter baumannii AB0057]
 gi|260408450|gb|EEX01757.1| DNA gyrase, B subunit [Acinetobacter baumannii ATCC 19606]
          Length = 822

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 228/581 (39%), Positives = 343/581 (59%), Gaps = 19/581 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85
                S +   Q+    YD+SSI++L GL+ VR RPGMYIG TD+   LHH+  EV+DNA
Sbjct: 2   SSESQSASQTEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNA 61

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AG+ + I V++  +  ++V DNGRGIP + HP+    S  E+ILT LHAGGKFD+
Sbjct: 62  IDEALAGHCDEIIVTIHEDESVSVSDNGRGIPTDIHPE-EGVSAAEVILTILHAGGKFDD 120

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +LH+T+ R   I  Q++  G P  PL    +  +  GT
Sbjct: 121 NSYKVSGGLHGVGVSVVNALSSKLHLTIYRAGQIHEQEYHHGDPQYPLRVIGET-DNTGT 179

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            + F P  + F     F+   L +  +  ++L+  V+     ++   E         + +
Sbjct: 180 TVRFWPSAETFSQTI-FNVEILARRLRELSFLNAGVRIVLRDERINLE-------HVYDY 231

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GGL  +++   E ++ ++           G     VE A+ W +     +  + N I  
Sbjct: 232 EGGLSEFVKYINEGKNHLNEIFHFTADADNGI---AVEVALQWNDSYQENVRCFTNNIPQ 288

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTRG+ +Y E      K  +++  DD       I+SV + +P+F+ Q
Sbjct: 289 KDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQ 348

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441
           TK KLVS + +  VE A+   F  YL++NP  A  +   +I+ +  R   RK      RK
Sbjct: 349 TKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRK 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           +A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  
Sbjct: 409 SALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +K+ ++Q++  L+ ALGC   R +Y  + LRY K+IIMTDADVDG+HI +LLLTFF+
Sbjct: 469 ARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFF 528

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++M +L+E+ H+++  PPL+++ +G +  Y  D +  +  L
Sbjct: 529 RQMPELVERGHIYIAQPPLYKLKKGKQEQYIKDNDALETYL 569



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 17/126 (13%)

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           +  + LIE    +L         +G + +   +     ++ +   +  +  + I R+KGL
Sbjct: 714 KSWFKLIEDG-AYL--------QKGDRRIQVAN---FHQVWQHILQDSRRGMMIQRYKGL 761

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GEM A QL ET MD   R +L+V I+  +    +     + LMG   + R  FI+E A  
Sbjct: 762 GEMNAEQLWETTMDPENRNMLQVTIDDAI----EADRMFSCLMGDDVEPRRAFIEENALN 817

Query: 681 IDDVGT 686
            D +  
Sbjct: 818 AD-IDA 822


>gi|322506191|gb|ADX01645.1| DNA gyrase subunit B [Acinetobacter baumannii 1656-2]
          Length = 822

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 228/581 (39%), Positives = 343/581 (59%), Gaps = 19/581 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85
                S +   Q+    YD+SSI++L GL+ VR RPGMYIG TD+   LHH+  EV+DNA
Sbjct: 2   SSESQSASQTEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNA 61

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AG+ + I V++  +  ++V DNGRGIP + HP+    S  E+ILT LHAGGKFD+
Sbjct: 62  IDEALAGHCDEIIVTIHEDESVSVSDNGRGIPTDIHPE-EGVSAAEVILTILHAGGKFDD 120

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +LH+T+ R   I  Q++  G P  PL    +  +  GT
Sbjct: 121 NSYKVSGGLHGVGVSVVNALSSKLHLTIYRAGQIHEQEYHHGDPQYPLRVIGET-DNTGT 179

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            + F P  + F     F+   L +  +  ++L+  V+     ++   E         + +
Sbjct: 180 TVRFWPSAETFSQTI-FNVEILARRLRELSFLNAGVRIVLRDERINLE-------HVYDY 231

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GGL  +++   E ++ ++           G     VE A+ W +     +  + N I  
Sbjct: 232 EGGLSEFVKYINEGKNHLNEIFHFTADADNGI---AVEVALQWNDSYQENVRCFTNNIPQ 288

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTRG+ +Y E      K  +++  DD       I+SV + +P+F+ Q
Sbjct: 289 KDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQ 348

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441
           TK KLVS + +  VE A+   F  YL++NP  A  +   +I+ +  R   RK      RK
Sbjct: 349 TKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRK 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           +A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  
Sbjct: 409 SALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +K+ ++Q++  L+ ALGC   R +Y  + LRY K+IIMTDADVDG+HI +LLLTFF+
Sbjct: 469 ARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFF 528

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++M +L+E+ H+++  PPL+++ +G +  Y  D +  +  L
Sbjct: 529 RQMPELVERGHIYIAQPPLYKLKKGKQEQYIKDNDALETYL 569



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 17/126 (13%)

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           +  + LIE    +L         +G + +   +     ++ +   +  +  + I R+KGL
Sbjct: 714 KSWFKLIEDG-AYL--------QKGDRRIQVAN---FHQVWQHILQDSRRGMMIQRYKGL 761

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GEM A QL ET MD   R +L+V I+  +    +     + LMG   + R  FI+E A  
Sbjct: 762 GEMNAEQLWETTMDPENRNMLQVTIDDAI----EADRMFSCLMGDDVEPRRAFIEENALN 817

Query: 681 IDDVGT 686
            D +  
Sbjct: 818 AD-IDA 822


>gi|193078690|gb|ABO13748.2| topoisomerase IV subunit B [Acinetobacter baumannii ATCC 17978]
          Length = 628

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 259/646 (40%), Positives = 370/646 (57%), Gaps = 29/646 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y A S+ +L GL+PVR RPGMY   TD    +HL  EVIDNA+DE +AG+A+ I V++ 
Sbjct: 3   QYTAQSLEVLSGLDPVRRRPGMY---TDTSRPNHLAQEVIDNAVDEALAGHADKICVTVY 59

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G L+V DNGRG+PV+ HP++  +S +EIILT LHAGGKF    Y+ SGGLHGVGISVV
Sbjct: 60  KDGSLSVEDNGRGMPVDIHPEY-GQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISVV 118

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGDKA 220
           NALS  + V V RQ  ++   F +G P++PL   E    +   GT + F P+ K F    
Sbjct: 119 NALSTRVEVEVQRQGNLYQMAFEQGEPVAPLAVLEGKAPKRATGTTVRFWPEAKYFDSP- 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L    ++KA L+  +K  +             EK E+ F  GL  YL  +L++R
Sbjct: 178 KFALKALKHNLKAKAVLAAGLKITYIDQ-------INDEKIEWQFENGLVDYLMDELQDR 230

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVAL 338
            ++ +  F    +     R   E+AI W  E  E    SY N I T +GGTH +GLR  +
Sbjct: 231 EILPNPAFVSSGQAD---RAACEFAICWNVEGGEQVQESYVNLIPTAQGGTHVNGLRSGV 287

Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           T  ++++ EL     R + + ++D+      ILS+  +EP+F+GQTK +L S +A   V 
Sbjct: 288 TEALREFCELRNLLPRNLKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREAANIVL 347

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
           N  +D F  +L Q+   A +L E  I ++  RL+    ++V RK  +    LPGKLADC 
Sbjct: 348 NIAKDAFALWLNQHAEIAMQLAEMAISKAGRRLK--AAKKVERKKIVSGPALPGKLADCV 405

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +ELFIVEGDSAGGSAKQAR+++ QA++P+RGKILN     S+++  +Q++ D+ 
Sbjct: 406 GQTREESELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIA 465

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+G    S     +LRY K+ I+ DAD DG HIA+LL   F +    L+E+ HL++  P
Sbjct: 466 IAIGVDPGSDDL-SELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAMP 524

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PLFRI  G    YA D+E  + IL+  K  G    +I+RFKGLGEM A QL+ET MD N 
Sbjct: 525 PLFRIDIGKDVHYALDDEELETILKNVK--GNKNPQITRFKGLGEMNAIQLRETTMDPNT 582

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKF-IQERASFID 682
           R L++++++    +          L   +A +R    +  RA+  D
Sbjct: 583 RRLVQLDLDDAHLTAGLLDKL---LAKKRAADRKTIGLSRRANLAD 625


>gi|262371170|ref|ZP_06064491.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262313900|gb|EEY94946.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 823

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 228/582 (39%), Positives = 345/582 (59%), Gaps = 19/582 (3%)

Query: 26  SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDN 84
           S E   + +   Q+    YD+SSI++L GL+ VR RPGMYIG TD+   LHH+  EV+DN
Sbjct: 2   SSEDQQAASQTEQTTEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDN 61

Query: 85  AMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144
           A+DE +AG+ + I V++  +  ++V DNGRGIP + HP+    S  E+ILT LHAGGKFD
Sbjct: 62  AIDEALAGHCDEILVTIHEDESVSVSDNGRGIPTDIHPE-EGVSAAEVILTILHAGGKFD 120

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L +T+ R   I  Q++  G P+ PL       +  G
Sbjct: 121 DNSYKVSGGLHGVGVSVVNALSRKLELTIHRAGHIHQQEYKHGDPVYPLTVVGNT-DTTG 179

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F     F+   L +  +  ++L+  V+     ++  AE         F 
Sbjct: 180 TTVRFWPSAETFSQTI-FNVDILARRLRELSFLNAGVRIVLRDERIHAE-------HVFD 231

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   + ++ ++         + G     VE A+ W +     +  + N I 
Sbjct: 232 YEGGLSEFVKYINQGKTHLNDIFHFTVQAENGI---GVEVALQWNDTYQENVRCFTNNIP 288

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  +++  DD       I+SV + +P+F+ 
Sbjct: 289 QKDGGTHLAGFRAALTRGLNSYMENENLLKKEKVAVSGDDAREGLTAIVSVKVPDPKFSS 348

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNR 440
           QTK KLVS + +  VE A+   F  YL++NP  A  +   +I+ +  R   RK      R
Sbjct: 349 QTKEKLVSSEVKPAVEQAMNKSFSEYLLENPQAAKSIAGKIIDAARARDAARKAREMTRR 408

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV 
Sbjct: 409 KSALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVE 468

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY K+IIMTDADVDG+HI +LLLTFF
Sbjct: 469 RARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFF 528

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +++M +L+E+ ++++  PPL+++ +G +  Y  D +  +  L
Sbjct: 529 FRQMPELVERGYIYIAQPPLYKLKKGKQEQYLKDNDALETYL 570



 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 17/126 (13%)

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           +  + L+E    +L         +G + +   +     ++ +      +  + I R+KGL
Sbjct: 715 KSWFTLLEDG-AYL--------QKGDRKIAVTN---FHQVWQHILSDSRRGMMIQRYKGL 762

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GEM A QL ET MD   R +L+V I   +    +     + LMG   + R  FI+E A  
Sbjct: 763 GEMNADQLWETTMDPENRNMLQVTIQDAI----EADRMFSCLMGDDVEPRRAFIEENALN 818

Query: 681 IDDVGT 686
            D +  
Sbjct: 819 AD-IDA 823


>gi|13507861|ref|NP_109810.1| topoisomerase IV subunit B [Mycoplasma pneumoniae M129]
 gi|2501299|sp|P78016|PARE_MYCPN RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|1673680|gb|AAB95680.1| topoisomerase IV subunit B [Mycoplasma pneumoniae M129]
          Length = 635

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 234/649 (36%), Positives = 359/649 (55%), Gaps = 30/649 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY  ++I+IL+GL+ V+ RPGMYIG TD +  HHL  E++DN +DEV++G+AN I V L
Sbjct: 3   NNYSEANIKILKGLDAVKKRPGMYIGSTDSRGFHHLLWEILDNCVDEVLSGFANTIAVVL 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
                +TV DNGRGIP E H      ST++ + T LHAGGKFDN +Y+I+GGLHGVG SV
Sbjct: 63  HAENQITVSDNGRGIPFETHS-DSKISTIDTVFTYLHAGGKFDNDSYKIAGGLHGVGASV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDK 219
           VNALSD+L VTV RQ  ++   +  G  +            ++ GT +TFRPDPK+F   
Sbjct: 122 VNALSDQLQVTVKRQGKVYRSVYENGGKIKQKAHCIGNAKIDEHGTSVTFRPDPKVFKKI 181

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             FD+  +    +  A+L  +++  +  +    EK      E F+   G+  YL     +
Sbjct: 182 H-FDSELIRARLKELAFLFKKLQLTFVDETGSGEK------EVFFTEAGISQYLDELNAD 234

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
              I+ +IF   TE         ++      E+ ++ S+ N+I T EGG+HE+  R ++ 
Sbjct: 235 SKQIAQKIFVSGTEDDIELEAVFQFIDG---EDEKLLSFANSIRTSEGGSHEASFRQSVG 291

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395
             I  Y        +R  +  + ++     GI+ V + E    F GQTK+KL S + +  
Sbjct: 292 DVINNYCRKYNFLKERDKNFEASEIREGLNGIIKVNLPEKIIAFEGQTKSKLFSKEVKAV 351

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP--GKL 453
           V+   +  F  +L +N ++A  ++E +    + R   ++QR++ +  +  K      GKL
Sbjct: 352 VQKLTQKHFFQFLERNSVDAKLIVEKLFYNRKLRQELKQQRQIKKNLSNPKAERILFGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK-IRNNQQ 512
           A          ELF+VEGDSAGG+AK  R+R  QA+LPLRGK+LNV    ++K   NN++
Sbjct: 412 APAQSKKVAERELFVVEGDSAGGTAKMGRDRFLQAILPLRGKVLNVEKINNKKEAINNEE 471

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           ++ L+  +G    + +   D +Y+K+IIMTDAD DGAHI  LLLTFFY+ M  LIE+ H+
Sbjct: 472 LLTLIFCIGTGIGNNFTIRDRKYDKIIIMTDADNDGAHIQILLLTFFYRYMKPLIEKGHI 531

Query: 573 FLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +L  PPL++   +  K+ Y   E+  ++   +          + R+KGLGEM A QL ET
Sbjct: 532 YLALPPLYKFEGRDKKARYLWTEQELEQYRAKH-----SHFNVQRYKGLGEMNADQLWET 586

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            M+   R L++V+++  + + K      N  MG K + R  +I+   +F
Sbjct: 587 TMNPMTRKLIQVKLDNFIQAEKQI----NVFMGDKTELRKSWIEANINF 631


>gi|262377662|ref|ZP_06070882.1| DNA gyrase, B subunit [Acinetobacter lwoffii SH145]
 gi|262307421|gb|EEY88564.1| DNA gyrase, B subunit [Acinetobacter lwoffii SH145]
          Length = 823

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 225/581 (38%), Positives = 344/581 (59%), Gaps = 18/581 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85
                + +   Q+    YD+SSI++L GL+ VR RPGMYIG TD+   LHH+  EV+DN+
Sbjct: 2   SSEDQAASQTEQTIEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNS 61

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AG+ + I V++  +  ++V DNGRGIP + HP+    S  E+ILT LHAGGKFD+
Sbjct: 62  IDEALAGHCDEIIVTIHEDESVSVSDNGRGIPTDIHPE-EGVSAAEVILTILHAGGKFDD 120

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS++L +T+ R   I  Q++  G    PL+      N+ GT
Sbjct: 121 NSYKVSGGLHGVGVSVVNALSEKLELTIHRAGKIHEQEYRHGDSQYPLKVVGDT-NRTGT 179

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           R+ F P  + F     F+   L +  +  ++L+  V+     ++  AE         F +
Sbjct: 180 RVRFWPSAETFSQTI-FNVDILARRLRELSFLNAGVRIVLRDERINAE-------HVFDY 231

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GGL  +++   E ++ ++        +       TVE A+ W +     +  + N I  
Sbjct: 232 EGGLSEFVKYINEGKTHLNDIFHFTAAQADN--GITVEVALQWNDSYQENVRCFTNNIPQ 289

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTRG+  Y +      K  +++  DD       I+SV + +P+F+ Q
Sbjct: 290 KDGGTHLAGFRAALTRGLNNYMDSENILKKEKVAVSGDDAREGLTAIVSVKVPDPKFSSQ 349

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441
           TK KLVS + +  VE A+   F  YL++NP  A  +   +I+ +  R   RK      RK
Sbjct: 350 TKEKLVSSEVKTAVEQAMNKAFSEYLLENPQAAKAIAGKIIDAARARDAARKAREMTRRK 409

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           +A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  
Sbjct: 410 SALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 469

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +++ ++ ++  L+ ALGC   R +Y  + LRY K+IIMTDADVDG+HI +LLLTFF+
Sbjct: 470 ARFDRMISSAEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFF 529

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++M +L+E+ H+++  PPL+++ +G +  Y  D +  +  L
Sbjct: 530 RQMPELVERGHIYIAQPPLYKLKKGKQEQYIKDNDALETYL 570



 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 17/126 (13%)

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           +  + L+E+   +L         +G + +   +     ++ +   +  +  + I R+KGL
Sbjct: 715 KSWFSLLEEG-AYL--------QKGDRKIQVSN---FHQVWQHILQDSRRGMMIQRYKGL 762

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GEM A QL ET MD + R +L+V +   +    +     + LMG   + R  FI+E A  
Sbjct: 763 GEMNAEQLWETTMDPDNRNMLQVTVTDAI----EADRMFSCLMGDDVEPRRAFIEENALN 818

Query: 681 IDDVGT 686
            D +  
Sbjct: 819 AD-IDA 823


>gi|209516133|ref|ZP_03264992.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia sp. H160]
 gi|209503417|gb|EEA03414.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia sp. H160]
          Length = 661

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 240/674 (35%), Positives = 357/674 (52%), Gaps = 42/674 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +  +  Y  +SI++L+GLEPV+ RPGMY   T  +   H+  EVIDNA DE + G+ 
Sbjct: 1   MSTKKPNAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGFG 57

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151
             I V+L  +  ++V D+GRGIP   HP       +EI+ T LHAGGKFD      Y  S
Sbjct: 58  RQITVTLHADHSVSVEDDGRGIPFGLHP-DEGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITF 209
           GGLHGVG+SV NALS  L VTV R   +    F+ G    PLE +   +   K GTR+T 
Sbjct: 117 GGLHGVGVSVTNALSTRLDVTVWRDGKVADLSFAHGDVKKPLEVRAAAKGEKKSGTRVTA 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
             DPK F          L ++ +SKA L   V+     +K         E++ + +  GL
Sbjct: 177 WADPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVTLVNEK-------TGEQQSWKYEDGL 228

Query: 270 KTYLQTKLENRSLISSEIF-------TGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNT 321
           + YL   +    L+            +  +E+         W +AW EE P +  SY N 
Sbjct: 229 RGYLLEGMNGSDLLIPLFEGERYAESSRSSEETFAEGEGAAWVVAWSEEGPLMRESYVNL 288

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFA 380
           I T  GGTHESGLR  L + +K + EL     + + ++++D+      +LS  + +P+F 
Sbjct: 289 IPTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQ 348

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQ K +L S DA + V +  R   + +L Q+     KL + VI++++ R R  ++ E  +
Sbjct: 349 GQIKERLNSRDAVKLVSSFARPALELWLNQHVEHGKKLADLVIKQAQARTRAGQKVEKRK 408

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
            + +  L  PGKL DC        ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN  
Sbjct: 409 SSGVAVL--PGKLTDCESTEIGRNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTW 466

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLLT 557
               +++  N ++ D+  A+G    +   +    +LRY K+ I++DADVDG+HI  LLLT
Sbjct: 467 ETERDRLFANNEVHDISVAIGVDPHNPDDKIDLSNLRYGKICILSDADVDGSHIQVLLLT 526

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--K 609
            F++    LIE+ H+ +  PPLFR+    +G K    +YA DE   + IL++ +K G   
Sbjct: 527 LFFKHFPQLIERGHVCVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDGVRD 586

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KAD 668
            +  ISRFKGLGEM A QL +T M+ + R L  V +             +  LMG  +A 
Sbjct: 587 NQWSISRFKGLGEMSAEQLWDTTMNPDTRRLQPVALGDLDYDATVA--RMTMLMGKGEAA 644

Query: 669 ERFKFIQERASFID 682
            R  +++E+ + ++
Sbjct: 645 SRRSWLEEKGNEVE 658


>gi|161594063|ref|NP_899673.2| DNA gyrase subunit B [Chromobacterium violaceum ATCC 12472]
          Length = 796

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 224/571 (39%), Positives = 342/571 (59%), Gaps = 19/571 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +   Y A SI++L+GL+ VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+A+ I+
Sbjct: 2   SEQEYGADSIKVLKGLDAVRKRPGMYIGDTQDGTGLHHMVFEVLDNAIDEALAGHADTIK 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+++ +  ++V DNGRGIP + HP+   +S  E+I+T LHAGGKFD+++Y+ISGGLHGVG
Sbjct: 62  VTINPDNSVSVEDNGRGIPTDIHPE-EGRSAAEVIMTILHAGGKFDSNSYKISGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALSD L + + R   +   +F RG  ++PL         RGT +TF    + FG 
Sbjct: 121 VSVVNALSDWLKLKIWRDGKVHEMEFRRGDAVAPLTVTGHTS-HRGTEVTFFASVETFG- 178

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              +    L K  +  ++L+  V       +   E       E F F GG+  +++    
Sbjct: 179 HIEYHFDILAKRIRELSFLNQGVGIQLIDKRSGKE-------ENFAFSGGVAGFVEYMNR 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++++  ++F G  EK G    +VE A+ W +     +  + N I   +GGTH + LR  
Sbjct: 232 NKTVLHPKVFYGIGEKDG---MSVEVAMQWNDSYQESVQCFTNNIPQRDGGTHMTALRQV 288

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           +TR + ++ E ++   K  +    DD+      +LSV + +P+F+ QTK KLVS +    
Sbjct: 289 MTRTLNQFIEESEAAKKAKVDTTGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPV 348

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLA 454
           V   + +    YL++NP +A  +   ++E +  R   RK RE+ R+   +  L LPGKLA
Sbjct: 349 VNEVISEALKTYLLENPNDAKIICGKIVEAARAREAARKAREITRRKGVMDGLGLPGKLA 408

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +      EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+  +Q++ 
Sbjct: 409 DCQEKDPSLCELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKMLQSQEVA 468

Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            L+ A+GC   + +Y  + LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ H++
Sbjct: 469 TLITAMGCGIGKDEYNPDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMTELVERGHIY 528

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           +  PPL++   G +  Y  D+    + L + 
Sbjct: 529 IAQPPLYKAKHGKQERYLKDDGELNQYLLQL 559



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 4/100 (4%)

Query: 586 TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645
            +           + L+      K  + I R+KGLGEM   QL ET MD   R LL+V I
Sbjct: 700 KRGETVKPVAEFGEALDWLLAEVKKGMNIQRYKGLGEMNPEQLWETTMDPTVRRLLKVRI 759

Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              +       D    LMG + + R +FI+  A    ++ 
Sbjct: 760 EDVMG----ADDVFTTLMGDEVEPRRQFIEGNALIARNID 795


>gi|254511739|ref|ZP_05123806.1| DNA gyrase, B subunit [Rhodobacteraceae bacterium KLH11]
 gi|221535450|gb|EEE38438.1| DNA gyrase, B subunit [Rhodobacteraceae bacterium KLH11]
          Length = 805

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 227/580 (39%), Positives = 334/580 (57%), Gaps = 16/580 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
             +  A   Y A SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DN +DE +AG+
Sbjct: 2   SEDAQAPQEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGH 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ + V +  +  ++V DNGRGIPV+ HP+    S  E+I+T LHAGGKFD+++Y++SGG
Sbjct: 62  ADHVTVKIHADSSVSVSDNGRGIPVDIHPE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALSD L + + R       +F  G     L+   +  ++ GT + F    
Sbjct: 121 LHGVGVSVVNALSDWLELRIWRNGKEHVARFEGGETAEHLKVVGECGDRTGTEVRFLAST 180

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
             F +   +    L K  +  A+L+  V+     ++              ++ GG+K ++
Sbjct: 181 NTFSNL-EYAFDTLEKRLRELAFLNSGVRIILIDERPAERLETE-----LFYEGGVKEFV 234

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +    +++   S+    K E+       VE A+ W +     +  + N I   +GGTH +
Sbjct: 235 KYLDRSKTPAMSDPIYIKGERDDI---GVEIAMWWNDSYHETVLPFTNNIPQRDGGTHVA 291

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR I  YA+ +    K  +S   DD       +LSV + +P+F+ QTK KLVS 
Sbjct: 292 GFRGALTRTINNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 351

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           + +  VE  + +    +  +NP EA  ++  +IE +  R   RK RE   RKTA+    L
Sbjct: 352 EVRPAVEGLMNEKLAEWFEENPNEAKGIVGKIIEAALAREAARKARELTRRKTAMDVNYL 411

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
            GKL DCS+     TE+F+VEGDSAGGSA+  R+R  QAVLPLRGKILNV  A  +++ +
Sbjct: 412 AGKLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRLTQAVLPLRGKILNVERARFDRMLS 471

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q+I +LV ALG    R ++  E LRY K++IMTDADVDGAHI +LLLTFFY++M +LIE
Sbjct: 472 SQEIGNLVMALGTGIGRDEFNIEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIE 531

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             +L++  PPL+++++G   VY  D+      L      G
Sbjct: 532 GGYLYIAQPPLYKVSRGKSEVYLKDQAALDDYLINQGVEG 571



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L    + G+  + + R+KGLGEM   QL ET +D + RTLL+V ++     + +  D 
Sbjct: 722 DLLRAILEEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVRVDD----MVEADDL 777

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R +FIQ+ A  ++++ 
Sbjct: 778 FTKLMGDVVEPRREFIQKNALSVENLD 804


>gi|221199539|ref|ZP_03572583.1| DNA topoisomerase IV, B subunit [Burkholderia multivorans CGD2M]
 gi|221205561|ref|ZP_03578576.1| DNA topoisomerase IV, B subunit [Burkholderia multivorans CGD2]
 gi|221174399|gb|EEE06831.1| DNA topoisomerase IV, B subunit [Burkholderia multivorans CGD2]
 gi|221180824|gb|EEE13227.1| DNA topoisomerase IV, B subunit [Burkholderia multivorans CGD2M]
          Length = 660

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 239/673 (35%), Positives = 357/673 (53%), Gaps = 41/673 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +  S  Y  +SI++L+GLEPV+ RPGMY   T  +   H+  EVIDNA DE + GY 
Sbjct: 1   MSTKKPSAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYG 57

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151
             I V+L  +  ++V D+GRGIP   HP       +EI+ T LHAGGKFD      Y  S
Sbjct: 58  KQITVTLHADQSVSVEDDGRGIPFGLHP-DEGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--LEKKEKVRNKRGTRITF 209
           GGLHGVG+SV NAL+  L VTV R   I    F+ G  + P   +   +   K GTR+  
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKIAELGFADGDVVKPLSTQPAGRGEKKSGTRVRV 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P+PK F          L ++ +SKA L   V+     +K         E++ + +  GL
Sbjct: 177 WPNPKYFDSAN-LPLGELQRLLRSKAVLLPGVEVVLVNEKS-------GERQSWKYEDGL 228

Query: 270 KTYLQTKLENRSLISSEI------FTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTI 322
           + YL  ++    L+           +   +          W +AW EE      SY N I
Sbjct: 229 RGYLLDEMNGSELLIPLFEGERFADSRSGDDTFAEGEGASWVVAWSEEGSLVRESYVNLI 288

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAG 381
            T  GGTHESGLR  L + +K + EL     + + ++++D+      +LS  + +P+F G
Sbjct: 289 PTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQG 348

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           Q K +L S DA + V +  R   + +L Q+     KL E VI++++ R R  ++ E  + 
Sbjct: 349 QIKERLNSRDAVKLVSSFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKVEKRKS 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +  L  PGKL DC        ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN   
Sbjct: 409 SGVAVL--PGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWE 466

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLLTF 558
              +++  N ++ D+  A+G             +LRY K+ I++DADVDG+HI  LLLT 
Sbjct: 467 TERDRLFANNEVHDISVAIGVDPHGPDDSVDLSNLRYGKICILSDADVDGSHIQVLLLTL 526

Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KG 610
           F++    LIE+ H+++  PPLFR+    +G K    +YA DE   + IL++ +K G  + 
Sbjct: 527 FFKHFPQLIERGHVYVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDGVRET 586

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669
           +  ISRFKGLGEM A QL +T M+ + R L+ V++       + T   +  LMG  +A  
Sbjct: 587 QWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKL--GELDYETTVARMTMLMGKGEAAA 644

Query: 670 RFKFIQERASFID 682
           R  +++E+ + ++
Sbjct: 645 RRGWLEEKGNDVE 657


>gi|313671974|ref|YP_004050085.1| DNA gyrase subunit b [Calditerrivibrio nitroreducens DSM 19672]
 gi|312938730|gb|ADR17922.1| DNA gyrase subunit B [Calditerrivibrio nitroreducens DSM 19672]
          Length = 796

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 236/585 (40%), Positives = 347/585 (59%), Gaps = 19/585 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           ++ ++Y   SI++LEGLE VR RPGMYIG  D K LHHL  EV+DN++DE +AGY   I 
Sbjct: 7   NSENSYSEESIKVLEGLEAVRQRPGMYIGSIDVKGLHHLVYEVVDNSIDEAMAGYCKNIF 66

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+L  +G +TV D+GRGIPV  HP    K T+E+++TTLHAGGKF++  Y  SGGLHGVG
Sbjct: 67  VTLHVDGSVTVEDDGRGIPVGIHP-TAKKPTVEVVMTTLHAGGKFNSGAYFASGGLHGVG 125

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+ L VTV R   ++ Q++ RGIP++  ++  K  +K GT++ F+PD +IF  
Sbjct: 126 VSVVNALSEYLEVTVKRDGKVYFQRYERGIPVTEFKEIGKT-DKTGTKVRFKPDSEIFET 184

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  A+L+  ++     +          +  +F F GG+ +Y++   +
Sbjct: 185 -TEFHFDSLAKRFRELAFLNSGIRIKAVDE-------ASEKVHDFCFDGGIVSYIKFLNK 236

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVA 337
            + L+  +      + +      VE AI +    + +I S+ N I T+EGGTHE+G + +
Sbjct: 237 GKELLFDDPIYVSGKYENV---VVECAILYNTSFDEKIISFVNNIHTEEGGTHEAGFKSS 293

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
            T+    +       K  IS+  DD+      I+S+ + EP F GQTK+KL S   +  V
Sbjct: 294 FTKAFNNFINKYNLLKDKISLEGDDVREGMSAIVSIKLNEPMFEGQTKSKLGSSIGKVAV 353

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
           E+ L      +  +N +   K+L+  ++    R   RK +E   RK A+    LPGKLAD
Sbjct: 354 ESVLGSFLPDFFEENSVVVKKILDKAVQAYRAREAARKAKELTRRKNALDISTLPGKLAD 413

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +E+FIVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ +N +I  
Sbjct: 414 CQEKDPALSEIFIVEGDSAGGSAKQCRDRRFQAILPLKGKILNVEKARYDKLLSNNEIKT 473

Query: 516 LVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           ++ ALGC    +  +   LRY K+IIMTDADVDGAHI++LLLTFF++ M  +IE+  L++
Sbjct: 474 IITALGCGIGKEDFDLNKLRYHKIIIMTDADVDGAHISTLLLTFFFRYMRPIIERGFLYI 533

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS--RF 617
             PPL++I +     Y H+EE  +  + +    G    EIS  R+
Sbjct: 534 ARPPLYKIKKNKVERYIHNEEEFEDFILDMGLDGVSIPEISEIRY 578



 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 7/106 (6%)

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
            +I    + +Y          +E     GK  + I R+KGLGEM   QL ET +D  +R 
Sbjct: 697 IKILVDGEELYFDKVSELVNFIES---RGKKGLTIQRYKGLGEMNPEQLWETTVDPERRV 753

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           L RV I       ++     + LMG     R +FI+E A +  ++ 
Sbjct: 754 LYRVTIED----AEEADGLFSLLMGDVVAPRREFIEENALYAKNID 795


>gi|226939535|ref|YP_002794608.1| DNA topoisomerase IV subunit B [Laribacter hongkongensis HLHK9]
 gi|226714461|gb|ACO73599.1| ParE [Laribacter hongkongensis HLHK9]
          Length = 656

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 246/665 (36%), Positives = 359/665 (53%), Gaps = 36/665 (5%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S  YD S++R+L+GLEPV+ RPGMY   TD     H+  EVIDNA DE + G+A  I V+
Sbjct: 2   SQIYDESAVRVLKGLEPVKERPGMYTRTTDPT---HICQEVIDNAADEALGGFARKIAVT 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLHGV 157
           +  +G L+V D+GRGIPV  HP       +E++ T LHAGGKFD      Y  SGGLHGV
Sbjct: 59  VHADGSLSVEDDGRGIPVGLHP-AEGVPVVELVFTRLHAGGKFDKQAGGAYAFSGGLHGV 117

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR-GTRITFRPDPKIF 216
           G+SV NALS  L V V R  +++   FS G  + PL +      +  GTR+   PDP  +
Sbjct: 118 GVSVTNALSTRLEVEVRRDGSVWQIAFSGGDVVEPLTRTGSCGPRTSGTRVRVWPDP-RY 176

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   +    L ++ ++KA L   V    + +K      G  +   + +P GLK+YL   
Sbjct: 177 FESPRYSLHELERLLRAKAVLLPGVAVTLTVEK----ADGSNDTRTWRYPDGLKSYLTEL 232

Query: 277 LENRSLISSEI---FTGKTEKKGTHRGT-VEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
            +  + ++           E     +G    WA AW EE      SY N I T  GGTHE
Sbjct: 233 CQGDAPLAPPFAGENYAGAEHDTFAQGEGAAWAFAWFEEGCGGGESYVNLIPTASGGTHE 292

Query: 332 SGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           +GLR  +   +K + E      R + ++++D+   A  +LS  + +P+F GQTK KL + 
Sbjct: 293 AGLRTGVFEAMKAFVEHHGLMPRGVKLVAEDVWGRARYVLSARVLDPQFQGQTKEKLNNR 352

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
           DA + V   +RDPF+++L  +  +  K+ E  I++++ RLR    +++ +K       LP
Sbjct: 353 DALKLVAAMVRDPFENWLNTHVEDGKKIAELAIKQAQSRLRSV--KKIEKKKGSGVAVLP 410

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL DC        ELF+VEGDSAGGSAK AR++  QA+LPLRGK+LN      +++  N
Sbjct: 411 GKLTDCESEDIERNELFLVEGDSAGGSAKLARDKETQAILPLRGKVLNSWETDRDQLFGN 470

Query: 511 QQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
            +I D+  A+G          D   LRY K+ I++DADVDG+HI  LLLT FY+    L+
Sbjct: 471 AEIHDIAVAIGVDPHGAGDTPDLSGLRYGKICILSDADVDGSHIQVLLLTLFYRHFPALV 530

Query: 568 EQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHG--KGKIEISRFK 618
              H+ +  PPLFR+    QG     +  YA DE   + I++  +     +G   +SRFK
Sbjct: 531 AAGHVCVAQPPLFRVDVPGQGKNRPPRKFYALDEAELEGIIDRLRAEKVREGSWSVSRFK 590

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQER 677
           GLGEM   QLK+T M+ + R LL V + +  + L  T+     LMG  +A  R  +++ R
Sbjct: 591 GLGEMNPEQLKDTTMNPDTRRLLPVRVREGADDL--TRRMFVMLMGKGEAASRRSWMESR 648

Query: 678 ASFID 682
              ++
Sbjct: 649 GHEVE 653


>gi|193075924|gb|ABO10501.2| DNA gyrase [Acinetobacter baumannii ATCC 17978]
          Length = 822

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 228/581 (39%), Positives = 343/581 (59%), Gaps = 19/581 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85
                S +   Q+    YD+SSI++L GL+ VR RPGMYIG TD+   LHH+  EV+DNA
Sbjct: 2   SSESQSASQTEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNA 61

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AG+ + I V++  +  ++V DNGRGIP + HP+    S  E+ILT LHAGGKFD+
Sbjct: 62  IDEALAGHCDEIIVTIHEDESVSVSDNGRGIPTDIHPE-EGVSAAEVILTILHAGGKFDD 120

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +LH+T+ R   I  Q++  G P  PL    +  +  GT
Sbjct: 121 NSYKVSGGLHGVGVSVVNALSSKLHLTIYRAGQIHEQEYHHGDPQYPLRVIGET-DNTGT 179

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            + F P  + F     F+   L +  +  ++L+  V+     ++   E         + +
Sbjct: 180 TVRFWPSAETFSQTI-FNVEILARRLRELSFLNAGVRIVLRDERINLE-------HVYDY 231

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GGL  +++   E ++ ++           G     VE A+ W +     +  + N I  
Sbjct: 232 EGGLSEFVKYINEGKNHLNEIFHFTADADNGI---AVEVALQWNDSYQENVRCFTNNIPQ 288

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTRG+ +Y E      K  +++  DD       I+SV + +P+F+ Q
Sbjct: 289 KDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQ 348

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441
           TK KLVS + +  VE A+   F  YL++NP  A  +   +I+ +  R   RK      RK
Sbjct: 349 TKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRK 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           +A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  
Sbjct: 409 SALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +K+ ++Q++  L+ ALGC   R +Y  + LRY K+IIMTDADVDG+HI +LLLTFF+
Sbjct: 469 ARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFF 528

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++M +L+E+ H+++  PPL+++ +G +  Y  D +  +  L
Sbjct: 529 RQMPELVERGHIYIAQPPLYKLKKGKQEQYIKDNDALETYL 569



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 17/126 (13%)

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           +  + LIE    +L         +G + +      +  ++ +   +  +  + I R+KGL
Sbjct: 714 KSWFKLIEDG-AYL--------QKGDRRIQV---ANFHQVWQHILQDSRRGMMIQRYKGL 761

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GEM A QL ET MD   R +L+V I+  +    +     + LMG   + R  FI+E A  
Sbjct: 762 GEMNAEQLWETTMDPENRNMLQVTIDDAI----EADRMFSCLMGDDVEPRRAFIEENALN 817

Query: 681 IDDVGT 686
            D +  
Sbjct: 818 AD-IDA 822


>gi|255746897|ref|ZP_05420842.1| topoisomerase IV subunit B [Vibrio cholera CIRS 101]
 gi|262147220|ref|ZP_06028023.1| topoisomerase IV subunit B [Vibrio cholerae INDRE 91/1]
 gi|262168411|ref|ZP_06036108.1| topoisomerase IV subunit B [Vibrio cholerae RC27]
 gi|262189725|ref|ZP_06048086.1| topoisomerase IV subunit B [Vibrio cholerae CT 5369-93]
 gi|255735299|gb|EET90699.1| topoisomerase IV subunit B [Vibrio cholera CIRS 101]
 gi|262023303|gb|EEY42007.1| topoisomerase IV subunit B [Vibrio cholerae RC27]
 gi|262031351|gb|EEY49962.1| topoisomerase IV subunit B [Vibrio cholerae INDRE 91/1]
 gi|262034393|gb|EEY52772.1| topoisomerase IV subunit B [Vibrio cholerae CT 5369-93]
          Length = 602

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 235/622 (37%), Positives = 343/622 (55%), Gaps = 24/622 (3%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MY   TD    +HL  EVIDN++DE +AGYA+ I+V L  +  L V+D+GRG+PV+ HP+
Sbjct: 1   MY---TDTTRPNHLGQEVIDNSVDEALAGYASKIQVILHADQSLEVIDDGRGMPVDIHPE 57

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
               S +E+IL  LHAGGKF N  Y+ SGGLHGVGISVVNALS  + V V R   ++   
Sbjct: 58  -EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVAVRRDGQVYEIA 116

Query: 184 FSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
           F  G  ++ L       R   GT + F PD K F     F  +RL+   ++KA L   ++
Sbjct: 117 FEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSPN-FSVSRLINNLRAKAVLCPGLE 175

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
             ++      E         + +  GLK YL   ++  +L+  E FTG+   +     T 
Sbjct: 176 IIFTDKVNNNE-------HRWLYEDGLKDYLAEGVKGYTLLPEEPFTGEFTAQTEA-ATW 227

Query: 303 EWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDD 361
                         SY N I T +GGTH +GLR  L   ++++ E      R + +  +D
Sbjct: 228 AVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNLLPRGVKLTGED 287

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
           +      +LS+ +++P+FAGQTK +L S  +   V   ++D F  +L + P  A +L E 
Sbjct: 288 VFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAFSLWLNEKPQLAEQLAEV 347

Query: 422 VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
            I  +  R+R    ++V RK       LPGKL DC+    + TELF+VEGDSAGGSAKQA
Sbjct: 348 CIANAHSRMR--ASKKVVRKKIASGPALPGKLTDCTVQDLNRTELFLVEGDSAGGSAKQA 405

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541
           R+R  QAV+PLRGKILN     ++++  +Q++ D+  ALG    S   E  LRY KV I+
Sbjct: 406 RDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVALGIDPDSDNLEA-LRYGKVCIL 464

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
            DAD DG HIA+LL   F +    L++  H+++  PPL+RI  G +  YA D++ K+ +L
Sbjct: 465 ADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRIDCGKEVFYALDDQEKEGVL 524

Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
           E   +  K K+ + RFKGLGEM   QL+ET MD N R L+++ I+      + T + ++ 
Sbjct: 525 ERLSQK-KAKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDD----AEATDEMMDM 579

Query: 662 LMGTK-ADERFKFIQERASFID 682
           L+G K AD+R  ++Q      +
Sbjct: 580 LLGKKRADDRRAWLQRNGDMAE 601


>gi|118578453|ref|YP_899703.1| DNA gyrase, B subunit [Pelobacter propionicus DSM 2379]
 gi|118501163|gb|ABK97645.1| DNA gyrase subunit B [Pelobacter propionicus DSM 2379]
          Length = 802

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 236/572 (41%), Positives = 345/572 (60%), Gaps = 17/572 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + Y A +I++LEGL  VR RP MYIG T    LHHL  E++DN++DE +AG+ + I V++
Sbjct: 13  EEYSADNIKVLEGLAAVRKRPAMYIGSTSGAGLHHLVYEIVDNSIDEALAGHCDNISVTI 72

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G +TV+DNGRGIP + HP    +S  E++LT LHAGGKFDN +Y++SGGLHGVG+SV
Sbjct: 73  NVDGSVTVIDNGRGIPTDMHP-TEGRSAAEVVLTVLHAGGKFDNDSYKVSGGLHGVGVSV 131

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  L + + R   IF Q + RG P++PL +    R  RGT++TF PD +IF     
Sbjct: 132 VNALSKWLELEIKRDGKIFRQSYRRGDPVAPLAETGATRK-RGTKVTFMPDEEIFET-TE 189

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F    L +  +  A+L+  V+   S  +         +  EFY+ GG+ ++++    N+ 
Sbjct: 190 FSFDVLSQRLRELAFLNAGVRIGISDMR------VDNKSHEFYYEGGINSFVEYLNRNKI 243

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            +  +    + EK G      E ++ + +    +I S+ N I T EGGTH  G + ALTR
Sbjct: 244 AVHPKPIYFRGEKGGV---ETEVSMQYNDSFDEKIFSFANNINTHEGGTHLVGFKAALTR 300

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +  YA       K  +SI  DDL      ++SV I +P+F GQTKTKL + + +  VE+
Sbjct: 301 TMNAYAAANNLLKKEKVSISGDDLREGLTCVISVKIPQPQFEGQTKTKLGNSEVKGYVES 360

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCS 457
            + +    +L +NP  A ++LE  IE +  R   R+ RE   RK A+    LPGKLADC 
Sbjct: 361 MINEKLAQFLEENPQVAKRILEKSIEAARAREAARRARETVRRKGALDLGGLPGKLADCQ 420

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           +      EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  +  +K+ ++Q+I  L+
Sbjct: 421 EKNPEHCELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKSRFDKMISSQEIRTLI 480

Query: 518 QALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
            ALG    +  +    LRY ++I+MTDADVDG+HI +LLLTFFY+ M +LI++ HL++  
Sbjct: 481 TALGTGIGKDDFDISKLRYGRIIVMTDADVDGSHILTLLLTFFYRNMNELIQRGHLYIAQ 540

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           PPL+++ +G K +Y  +E   Q  L E     
Sbjct: 541 PPLYKVKRGKKEMYLRNEAALQNFLLEEGAED 572



 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 4/88 (4%)

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           +++L  F ++ K  + I R+KGLGEM   QL ET M+   R LL+V+I   + S     +
Sbjct: 718 EELLVYFLENAKKGLGIQRYKGLGEMNPDQLWETTMNPENRVLLQVKIEDAVES----DE 773

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
               LMG + D R +FI+  A  + ++ 
Sbjct: 774 IFTILMGDQVDPRREFIETNALNVVNLD 801


>gi|167562025|ref|ZP_02354941.1| DNA topoisomerase IV subunit B [Burkholderia oklahomensis EO147]
 gi|167569283|ref|ZP_02362157.1| DNA topoisomerase IV subunit B [Burkholderia oklahomensis C6786]
          Length = 660

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 242/673 (35%), Positives = 361/673 (53%), Gaps = 41/673 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +  +  Y  +SI++L+GLEPV+ RPGMY   T  +   H+  EVIDNA DE + GY 
Sbjct: 1   MSTKKPAAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYG 57

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151
             I V+L  +  ++V D+GRGIP   HP+      +EI+ T LHAGGKFD      Y  S
Sbjct: 58  KQITVTLHPDQSVSVEDDGRGIPFGLHPE-ERVPVVEIVFTRLHAGGKFDKAKGGAYTFS 116

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK--EKVRNKRGTRITF 209
           GGLHGVG+SV NAL+  L VTV R   I    F+ G  + PL  +   +   K GTR+T 
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKIAQLGFADGDVVKPLATQAAGRGEKKSGTRVTV 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P+PK F          L ++ +SKA L   V+  +  +K         E++ + +  GL
Sbjct: 177 WPNPKYFDSPN-LPTGELQRLLRSKAVLLPGVEVVFVNEK-------TGERQSWRYEDGL 228

Query: 270 KTYLQTKLENRSLISSEI------FTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTI 322
           + YL   +    L+           +   +          W +AW EE      SY N I
Sbjct: 229 RGYLLEGMNGSELLIPLFEGERFADSRSGDDTFAEGEGASWVVAWSEEGSLVRESYVNLI 288

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAG 381
            T  GGTHESGLR  L + +K + EL     + + ++++D+      +LS  + +P+F G
Sbjct: 289 PTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQG 348

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           Q K +L S DA + V +  R   + +L Q+     KL E VI++++ R R  ++ E  + 
Sbjct: 349 QIKERLNSRDAVKLVSSFTRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKVEKKKS 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +  L  PGKL DC        ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN   
Sbjct: 409 SGVAVL--PGKLTDCETEDLARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWE 466

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLLTF 558
              +++  N ++ D+  A+G    S        +LRY K+ I++DADVDGAHI  LLLT 
Sbjct: 467 TERDRLFANNEVHDISVAIGVDPHSPDDGVDLSNLRYGKICILSDADVDGAHIQVLLLTL 526

Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KG 610
           F++    LIE+ H+F+  PPLFR+    +G K    +YA DE   + IL++ +K G  + 
Sbjct: 527 FFKHFPQLIERGHVFVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDGVRET 586

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669
           +  ISRFKGLGEM A QL +T M+ + R L+ + +       + T + +  LMG  +A  
Sbjct: 587 QWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPIALGD--LDFEATVERMTMLMGKGEAAA 644

Query: 670 RFKFIQERASFID 682
           R  +++E+ + ++
Sbjct: 645 RRNWLEEKGNDVE 657


>gi|167718666|ref|ZP_02401902.1| DNA topoisomerase IV subunit B [Burkholderia pseudomallei DM98]
          Length = 660

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 242/673 (35%), Positives = 359/673 (53%), Gaps = 41/673 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +  +  Y  +SI++L+GLEPV+ RPGMY   T  +   H+  EVIDNA DE + G+ 
Sbjct: 1   MSTKKPAAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGFG 57

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151
             I V+L  +  ++V D+GRGIP   HP+      +EI+ T LHAGGKFD      Y  S
Sbjct: 58  KQITVTLHPDQSVSVEDDGRGIPFGLHPE-EKVPVVEIVFTRLHAGGKFDKAKGGAYTFS 116

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITF 209
           GGLHGVG+SV NAL+  L VTV R   I    F+ G  + PL  +   R   K GTR+T 
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGRIAQLGFADGDVVKPLATQGAGRGEKKSGTRVTV 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P+PK F          L ++ +SKA L   V+     +K         E++ + +  GL
Sbjct: 177 WPNPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVVLVNEK-------TGERQSWKYDDGL 228

Query: 270 KTYLQTKLENRSLISSEI------FTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTI 322
           + YL  ++    L+           +   +          W +AW EE      SY N I
Sbjct: 229 RGYLLDEMNGSELLIPLFEGERFADSRSGDATFAEGEGASWVVAWSEEGSLVRESYVNLI 288

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAG 381
            T  GGTHESGLR  L + +K + EL     + + ++++D+      +LS  + +P+F G
Sbjct: 289 PTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQG 348

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           Q K +L S DA + V +  R   + +L Q+     KL E VI++++ R R  ++ E  + 
Sbjct: 349 QIKERLNSRDAVKLVSSFTRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKVEKKKS 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +  L  PGKL DC        ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN   
Sbjct: 409 SGVAVL--PGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWE 466

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQY---REEDLRYEKVIIMTDADVDGAHIASLLLTF 558
              +++  N ++ D+  A+G             +LRY K+ I++DADVDGAHI  LLLT 
Sbjct: 467 TERDRLFANNEVHDISVAIGVDPHGPDDSVDVSNLRYGKICILSDADVDGAHIQVLLLTL 526

Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KG 610
           F++    LIE+ H+F+  PPLFR+    +G K    +YA DE   + IL++ +K G  + 
Sbjct: 527 FFKHFPQLIERGHVFVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDGVRES 586

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669
           +  ISRFKGLGEM A QL +T M+ + R L+ V +       + T   +  LMG  +A  
Sbjct: 587 QWTISRFKGLGEMSAEQLWDTTMNPDTRRLMPVAL--GELDFEATVARMTMLMGKGEAAA 644

Query: 670 RFKFIQERASFID 682
           R  +++E+ + ++
Sbjct: 645 RRNWLEEKGNEVE 657


>gi|239503906|ref|ZP_04663216.1| DNA gyrase, B subunit [Acinetobacter baumannii AB900]
          Length = 822

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 228/581 (39%), Positives = 343/581 (59%), Gaps = 19/581 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85
                S +   Q+    YD+SSI++L GL+ VR RPGMYIG TD+   LHH+  EV+DNA
Sbjct: 2   SSESQSASQTEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNA 61

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AG+ + I V++  +  ++V DNGRGIP + HP+    S  E+ILT LHAGGKFD+
Sbjct: 62  IDEALAGHCDEIIVTIHEDESVSVSDNGRGIPTDIHPE-EGVSAAEVILTILHAGGKFDD 120

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +LH+T+ R   I  Q++  G P  PL    +  +  GT
Sbjct: 121 NSYKVSGGLHGVGVSVVNALSSKLHLTIYRAGQIHEQEYHHGDPQYPLRVIGET-DNTGT 179

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            + F P  + F     F+   L +  +  ++L+  V+     ++   E         + +
Sbjct: 180 TVRFWPSAETFSQTI-FNVEILARRLRELSFLNAGVRIVLRDERINLE-------HVYDY 231

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GGL  +++   E ++ ++           G     VE A+ W +     +  + N I  
Sbjct: 232 EGGLSEFVKYINEGKNHLNEIFHFTADADNGI---AVEVALQWNDSYQENVRCFTNNIPQ 288

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTRG+ +Y E      K  +++  DD       I+SV + +P+F+ Q
Sbjct: 289 KDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQ 348

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441
           TK KLVS + +  VE A+   F  YL++NP  A  +   +I+ +  R   RK      RK
Sbjct: 349 TKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRK 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           +A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  
Sbjct: 409 SALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +K+ ++Q++  L+ ALGC   R +Y  + LRY K+IIMTDADVDG+HI +LLLTFF+
Sbjct: 469 ARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFF 528

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++M +L+E+ H+++  PPL+++ +G +  Y  D +  +  L
Sbjct: 529 RQMPELVERGHIYIAQPPLYKLKKGKQEQYIKDNDALETYL 569



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 17/126 (13%)

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           +  + LIE    +L         +G + +      +  ++ +   +  +  + I R+KGL
Sbjct: 714 KSWFKLIEDG-AYL--------QKGDRRIQV---ANFHQVWQHILQDSRRGMMIQRYKGL 761

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GEM A QL ET MD   R +L+V I+  +    +     + LMG   + R  FI+E A  
Sbjct: 762 GEMNAEQLWETTMDPENRNMLQVTIDDAI----EADRMFSCLMGDDVEPRRAFIEENALN 817

Query: 681 IDDVGT 686
            D +  
Sbjct: 818 AD-IDA 822


>gi|161524095|ref|YP_001579107.1| DNA topoisomerase IV subunit B [Burkholderia multivorans ATCC
           17616]
 gi|189351148|ref|YP_001946776.1| DNA topoisomerase IV subunit B [Burkholderia multivorans ATCC
           17616]
 gi|160341524|gb|ABX14610.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia multivorans ATCC
           17616]
 gi|189335170|dbj|BAG44240.1| topoisomerase IV subunit B [Burkholderia multivorans ATCC 17616]
          Length = 660

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 239/673 (35%), Positives = 357/673 (53%), Gaps = 41/673 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +  S  Y  +SI++L+GLEPV+ RPGMY   T  +   H+  EVIDNA DE + GY 
Sbjct: 1   MSTKKPSAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYG 57

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151
             I V+L  +  ++V D+GRGIP   HP       +EI+ T LHAGGKFD      Y  S
Sbjct: 58  KQITVTLHADQSVSVEDDGRGIPFGLHP-DEGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--LEKKEKVRNKRGTRITF 209
           GGLHGVG+SV NAL+  L VTV R   I    F+ G  + P   +   +   K GTR+  
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKIAELGFADGDVVKPLSTQPAGRGEKKSGTRVRV 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P+PK F          L ++ +SKA L   V+     +K         E++ + +  GL
Sbjct: 177 WPNPKYFDSAN-LPLGELQRLLRSKAVLLPGVEVVLVNEKS-------GERQSWKYEDGL 228

Query: 270 KTYLQTKLENRSLISSEI------FTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTI 322
           + YL  ++    L+           +   +          W +AW EE      SY N I
Sbjct: 229 RGYLLDEMNGSELLIPLFEGERFADSRSGDDTFAEGEGASWVVAWSEEGSLVRESYVNLI 288

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAG 381
            T  GGTHESGLR  L + +K + EL     + + ++++D+      +LS  + +P+F G
Sbjct: 289 PTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQG 348

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           Q K +L S DA + V +  R   + +L Q+     KL E VI++++ R R  ++ E  + 
Sbjct: 349 QIKERLNSRDAVKLVSSFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKVEKRKS 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +  L  PGKL DC        ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN   
Sbjct: 409 SGVAVL--PGKLTDCEAEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWE 466

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLLTF 558
              +++  N ++ D+  A+G             +LRY K+ I++DADVDG+HI  LLLT 
Sbjct: 467 TERDRLFANNEVHDISVAIGVDPHGPDDSVDLSNLRYGKICILSDADVDGSHIQVLLLTL 526

Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KG 610
           F++    LIE+ H+++  PPLFR+    +G K    +YA DE   + IL++ +K G  + 
Sbjct: 527 FFKHFPQLIERGHVYVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDGVRET 586

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669
           +  ISRFKGLGEM A QL +T M+ + R L+ V++       + T   +  LMG  +A  
Sbjct: 587 QWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKL--GELDYETTVARMTMLMGKGEAAA 644

Query: 670 RFKFIQERASFID 682
           R  +++E+ + ++
Sbjct: 645 RRGWLEEKGNDVE 657


>gi|46446709|ref|YP_008074.1| DNA gyrase subunit B [Candidatus Protochlamydia amoebophila UWE25]
 gi|46400350|emb|CAF23799.1| probable DNA gyrase subunit B [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 835

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 232/585 (39%), Positives = 327/585 (55%), Gaps = 21/585 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             YDASSI +LEGL+ VR RPGMYIG T    LHHL  EVIDN +DE +AGY   I+V L
Sbjct: 16  KEYDASSITVLEGLQAVRERPGMYIGDTGVNGLHHLVYEVIDNCIDEAMAGYCTAIDVVL 75

Query: 102 DGNGFLTVVDNGRGIPVENHP-----KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
             +  +++ D+GRGIPVE H      +    S +E+++T LHAGGKFD  TY++SGGLHG
Sbjct: 76  HKDNSISIEDDGRGIPVERHENESRKQGREVSAIEVVMTILHAGGKFDKDTYKVSGGLHG 135

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+S VNALS ++ V V +   +   +FS+G  + P++   +    RGT++ F PDP++ 
Sbjct: 136 VGVSCVNALSKKMIVQVCKNGLMHEIEFSQGKVVKPVQVIGETTK-RGTKVWFWPDPEVM 194

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                FD   L K  +  A+L+  +   +       EK+   E   F + GGL +++   
Sbjct: 195 TT-IDFDYDILAKRFRELAFLNKGINIFFRD-----EKHAEKEDVNFCYQGGLSSFVSYL 248

Query: 277 LENRSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
            EN+  + S        K G       E A+ W +     I SY N I T +GG+H +G 
Sbjct: 249 NENKEPLFSNPIYFHGVKPGDDAPIEFEVAMQWNDGYSETIFSYVNNIPTRQGGSHLTGF 308

Query: 335 RVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
             ALTR +  Y +     ++  I    +D+      ++SV +  P+F GQTK +L + D 
Sbjct: 309 STALTRVLNNYIKNHNLLKSDKISINGEDMREGLTAVISVKVANPQFEGQTKQRLGNSDV 368

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN-RKTAIRKLRLPG 451
              V+  + +    +L +NP  A  + +  I  ++ R   RK RE+  RK+A+   RLPG
Sbjct: 369 GSVVQQIVGEELAIFLDENPSMAKLITDKAIIAAQAREAARKARELTLRKSALDSARLPG 428

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL DC +      E++IVEGDSAGGSAK  R+R  QA+LP+RGKILNV  A  EK+  N 
Sbjct: 429 KLTDCQEKNPALCEIYIVEGDSAGGSAKSGRDRRFQAILPIRGKILNVEKARLEKVLQNT 488

Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  +V ALGC         E LRY KVIIMTDADVDG+HI +LLLTFFY+ M  L+E  
Sbjct: 489 EVGTMVAALGCGIGKDGFNLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPALVENN 548

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615
            +++  PPL+R+++   S Y H E      L E    G   I+I 
Sbjct: 549 FIYIAQPPLYRVSRKKTSRYIHSEREMDDYLLEL---GLSDIQIK 590



 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K+   +     +++++  + +G+  IEI R+KGLGEM A QL ET MD  KRTL+
Sbjct: 738 VEEGGKTYTYYT---LREVIDFLRNNGRKGIEIQRYKGLGEMNADQLWETTMDPVKRTLI 794

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V +   +            LMG     R  FI++ A  + ++ 
Sbjct: 795 KVTLPDVI----AADHMFTMLMGEDVPPRRAFIEQHALSVKNLD 834


>gi|320093848|ref|ZP_08025690.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Actinomyces sp. oral
           taxon 178 str. F0338]
 gi|319979199|gb|EFW10700.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Actinomyces sp. oral
           taxon 178 str. F0338]
          Length = 705

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 240/704 (34%), Positives = 352/704 (50%), Gaps = 63/704 (8%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
             +Q+ + +Y A  + +LEGLE VR RPGMYIG TD K L H   E+IDNA+DE + G+ 
Sbjct: 3   PVSQTKASDYSARHLSVLEGLEAVRKRPGMYIGSTDHKGLMHCLWEIIDNAVDEALEGHC 62

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I+V L  +   +V DNGRG+PV+  P     S +E++ T LHAGGKF   +Y  +GGL
Sbjct: 63  DTIDVRLHPDHSASVSDNGRGVPVDEVP-GIGLSGVEVVYTKLHAGGKFGGGSYGAAGGL 121

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP--------------------LSPLE 194
           HGVG SVVNALS  + V V R +  +   F RG P                     S L+
Sbjct: 122 HGVGASVVNALSARMDVQVDRGSKTYEMCFRRGEPGEFDDSRQRTPNSPFTPFTDQSRLK 181

Query: 195 KKEKVRN-KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
              KV+  K GTR+ F  D +IF    GF    LL   +  A+L   +           E
Sbjct: 182 TVGKVKRTKTGTRVRFWADFQIFPATEGFSWESLLARARQTAFLVPGLTINCVD-----E 236

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR-------------- 299
           +      E F F GG+  +      +  +  +    G+     T +              
Sbjct: 237 RGEEERSESFRFDGGVVDFANWLATDGPVTDTWHIMGEGAYTETVQVLDADTGHLTASEL 296

Query: 300 ---GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK--- 352
               +V+ A+ W       + S+ N I T +GGTH +G   A+ R ++   +    K   
Sbjct: 297 ERVCSVDIALRWGIGYDTSVRSFVNIIATPKGGTHVAGFEQAVLRVLRAQIDKNSRKLKV 356

Query: 353 --RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY--- 407
             +      DD++     +++V   EP+F GQTK  L +   +  V   + D        
Sbjct: 357 GAKDGRPEKDDVLAGMTAVVTVRFPEPQFEGQTKEILGTPQIRSVVSKVVGDWLGAKLAS 416

Query: 408 -LVQNPIEATKLLEWVIERSEERLRRRKQREVNR-KTAIRKLRLPGKLADCSQNIAHGTE 465
               +  +A++L+E V+   + R+  R  +E++R K A+    LP KLADC       TE
Sbjct: 417 PKRDDKQQASQLMEKVVGEMKARVSARIHKEISRKKNALETSSLPAKLADCRLADVAETE 476

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
           LFIVEGDSA G+AK ARN   QA+ P+RGKILNV  A +  +  N +  +++Q +G  + 
Sbjct: 477 LFIVEGDSALGTAKAARNSHYQALFPIRGKILNVQKASTADMLANAECANIIQVIGAGSG 536

Query: 526 SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI--- 582
             +  E  RY KVI+MTDADVDGAHI +LLLT F++ M  ++E   ++   PPL RI   
Sbjct: 537 RTFDLESARYGKVILMTDADVDGAHIRTLLLTLFFRYMRPMVEAGRIYAAVPPLHRIEVA 596

Query: 583 ---TQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANKR 638
               +  + VY + E+   + L   +K G+  K  I R+KGLGEM A QL ET MD   R
Sbjct: 597 GKGRRKREYVYTYSEDELHRRLAALRKSGRTWKEPIQRYKGLGEMDADQLAETTMDRAHR 656

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           +L R+ +  +  +L+  +D    LMG+    R +FI E ++ +D
Sbjct: 657 SLRRITLADE-EALRRAEDVFELLMGSTVGPRREFIVEESAGLD 699


>gi|269799056|gb|ACZ43806.1| DNA gyrase subunit B [Moritella viscosa]
 gi|269799060|gb|ACZ43808.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 805

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 229/578 (39%), Positives = 352/578 (60%), Gaps = 18/578 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
           + +NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I 
Sbjct: 2   SENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCTDIV 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +G ++V D+GRGIPV+ H +    S  E+ILT LHAGGKFD+++Y++SGGLHGVG
Sbjct: 62  VTIHDDGSVSVSDDGRGIPVDIHEE-EGVSAAEVILTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS++L +T+ R   I +Q +  G+P  P+ +   V +  GT + F P  + F +
Sbjct: 121 VSVVNALSEKLELTIFRHGKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFWPSHETFTN 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++E        + + F + GG+K ++     
Sbjct: 180 TL-FHYDILAKRLRELSFLNSGVSIKLIDERED------GKSDHFVYEGGIKAFVDYLNV 232

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ I+ + F    E++     TVE A+ W +     I  + N I   +GGTH +G R A
Sbjct: 233 NKTPINKDAFHFSVERED--GITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGA 290

Query: 338 LTRGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           LTR +  Y E     +  ++ +   DD       ++SV + +P+F+ QTK KLVS + + 
Sbjct: 291 LTRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKS 350

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKL 453
            VE A+ +    YL++NP EA+ ++  +I+ S  R   RK      RK A+    LPGKL
Sbjct: 351 AVEQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKARDMTRRKGALDLAGLPGKL 410

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 411 ADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 470

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ A+GC   R +Y  +  RY ++IIMTDADVDG+HI +LLLTFF+++M +LIE+ ++
Sbjct: 471 ATLITAMGCGIGRDEYNPDKTRYHQIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYI 530

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           ++  PPL+++ +G +  Y  D+    + L        G
Sbjct: 531 YIAQPPLYKMKKGKQERYIKDDADLTQYLTTIALDDAG 568



 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G KS    +     + L       K    I R+KGLGEM  SQL ET MD   R +L
Sbjct: 708 IKRGEKSREVTN---FVEALNWLMAESKRGSYIQRYKGLGEMNPSQLWETTMDPETRRML 764

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG   + R +FI+E A  + ++ 
Sbjct: 765 QVRIEDAV----AADQLFTTLMGDHVEPRREFIEENALKVANLD 804


>gi|322514536|ref|ZP_08067569.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Actinobacillus ureae
           ATCC 25976]
 gi|322119475|gb|EFX91562.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Actinobacillus ureae
           ATCC 25976]
          Length = 810

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 237/588 (40%), Positives = 355/588 (60%), Gaps = 20/588 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
            + Q+ +++YD+SSI++L GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+
Sbjct: 1   MSEQNQTNSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 60

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
              I V++  +  ++V D+GRGIPV  HP+    S  E+I+T LHAGGKFD+++Y++SGG
Sbjct: 61  CKDIIVTIHSDNSVSVQDDGRGIPVGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGG 119

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS +L +T+ R+  ++ Q +S G P +PL       +K GT + F P  
Sbjct: 120 LHGVGVSVVNALSSKLQLTIRREGHVYEQFYSLGEPDAPLTIIGDT-DKTGTMVRFWPSL 178

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF +K  F+   L K  +  ++L+  V      +++  E       E F + GG+K Y+
Sbjct: 179 DIFKNKTEFEYKILSKRLRELSFLNSGVSIRLVDERDGKE-------EHFKYEGGIKAYV 231

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   E ++ I +  F   TEK G     VE ++ W +     +  + N I   +GGTH +
Sbjct: 232 EYLNEGKTHIHNTPFYLSTEKDGI---GVEVSLQWNDSYNENVYCFTNNIPQRDGGTHLA 288

Query: 333 GLRVALTRGIKKYAELTQNKR----AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           G R ALTR +K Y + +   +     I    DD     V ++SV + +P+F+ QTK KLV
Sbjct: 289 GFRGALTRALKNYMDNSGVVKKADANIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLV 348

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447
           S + +  VE+++ +    YL +NP +A  ++  +I+ +  R   RK R    RK A+   
Sbjct: 349 SSEVRGAVESSMNEALAEYLAENPDDAKNIVTKIIDAARAREAARKAREMTRRKGALDLG 408

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            L GKLADC +     +EL++VEGDSAGGSAKQ R+R NQA+LPL+GKILNV  A  +K+
Sbjct: 409 GLLGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKM 468

Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
            ++Q++  L+ ALG    R  Y  E LRY K+IIMTDADVDGAHI +LLLTFFY++M +L
Sbjct: 469 LSSQEVATLITALGTGIGRDDYNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPEL 528

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           IE  ++++  PPL+++ +G +  Y  D +   +   +    G G   I
Sbjct: 529 IENGYIYIAQPPLYKVKKGKQERYIQDNDEMSQYEIDIALEGAGLFVI 576



 Score =  130 bits (326), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 5/89 (5%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
             + L+   +  +  + I R+KGLGEM   QL ET MD   R +L+V I   +       
Sbjct: 726 FAEALDWLVRESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNITDAI----AAD 781

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
              + LMG + + R  FI+  A +   + 
Sbjct: 782 KLFSTLMGDEVEPRRDFIESNALYA-QLD 809


>gi|159464611|ref|XP_001690535.1| DNA gyrase subunit B-like protein [Chlamydomonas reinhardtii]
 gi|158280035|gb|EDP05794.1| DNA gyrase subunit B-like protein [Chlamydomonas reinhardtii]
          Length = 649

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 233/657 (35%), Positives = 348/657 (52%), Gaps = 31/657 (4%)

Query: 50  RILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD-GNGFLT 108
           ++LEGLEPVR RPGMYIGGT    LHHL  EV+DNA+DEV AG+A+ +EV +D  +G+++
Sbjct: 1   QVLEGLEPVRKRPGMYIGGTGSDGLHHLIWEVVDNAVDEVQAGHASAVEVDVDLSSGWVS 60

Query: 109 VVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST--YEISGGLHGVGISVVNALS 166
           VVDNGRGIPV+ HP    KS LE +LT LHAGGKF      Y++SGGLHGVGISVVNALS
Sbjct: 61  VVDNGRGIPVDVHP-VTGKSALETVLTVLHAGGKFGGDNSGYKVSGGLHGVGISVVNALS 119

Query: 167 DELHVTVARQNTIFSQKFSRGIPLSPLEKK-----EKVRNKRGTRITFRPDPKIFGDKAG 221
            EL VTV R  + +SQ++SRG PL  L  +      +   + GT++ F  D  IF     
Sbjct: 120 SELEVTVWRAGSRYSQRYSRGAPLEELRVQLLPPGSEEAGRSGTQVRFLYDASIFAKDVA 179

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           + A  +       A+L+ R    +   +         + + F + GGL+ ++       +
Sbjct: 180 YSADVIATRLHELAFLNARATIRFRALRRGK---PEGQWQVFQYSGGLREFVGCLQAAYT 236

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
            +   +   + +             A      E+  + N+I T +GGTH  GLR  LTR 
Sbjct: 237 PLHEALVVTRADGGSGVVVEAALQWAADSFKEEVRGFANSIHTVDGGTHMEGLRAGLTRA 296

Query: 342 IKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + +     +  +        + +      ++SV +  PEF GQTKT+L + + ++ VENA
Sbjct: 297 VTQLGRKAKQIKDSDPPLSGEHVREGLGAVVSVKVPNPEFEGQTKTRLGNPEVRKIVENA 356

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR---EVNRKTAIRKLRLPGKLADC 456
           + +    +L  +P     L    +  +      RK R            +  LPGKLADC
Sbjct: 357 VYEAVGEWLEAHPAALAALCAKALTSARAAEAARKARELVRRKTSLFTGRSTLPGKLADC 416

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK--IRNNQQIM 514
           +      TE++IVEGDSAGGSAKQAR+R  QA+LPL+GKILNV         +  N +I 
Sbjct: 417 TSTNREETEIYIVEGDSAGGSAKQARDRRFQAILPLKGKILNVERLTDANELMYKNTEIS 476

Query: 515 DLVQ-----ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           +L+       +G R+R    +  L Y K++++TDADVDGAHI +LLLTF ++    L   
Sbjct: 477 NLIALGYERTVGVRSRCHAFKL-LLYGKIVVLTDADVDGAHIRTLLLTFLFRHRPQLFAA 535

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
             +++  PPL+++ +G    +AH +     ++ E ++   G   + RFKGLGEM+  QL 
Sbjct: 536 GRVYVAVPPLYKVERGKSVWWAHSDAELAALVSE-QRLAPGGYSVQRFKGLGEMMPQQLW 594

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           +T ++   R L R+ +      + +    +  LMGTK + R   I+  +  +  +  
Sbjct: 595 DTTLNPESRLLRRLTV----RDVSEADSMLTMLMGTKVEPRKALIEAYSRRLS-LDA 646


>gi|27375934|ref|NP_767463.1| DNA gyrase subunit B [Bradyrhizobium japonicum USDA 110]
 gi|27349072|dbj|BAC46088.1| DNA gyrase subunit B [Bradyrhizobium japonicum USDA 110]
          Length = 811

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 244/582 (41%), Positives = 344/582 (59%), Gaps = 12/582 (2%)

Query: 26  SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDN 84
           +     +PA    S   +Y A SIR+L+GL+ VR RPGMYIG TD+   LHH+  EV+DN
Sbjct: 2   TEPARQTPAENEPSNPSDYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDN 61

Query: 85  AMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144
           A+DE +AG+A  ++V L+ +  +TV D+GRGIPV+ H K    S  E+I+T LHAGGKFD
Sbjct: 62  AIDEALAGHATRVDVVLNADNSVTVRDDGRGIPVDIH-KGEGISAAEVIMTQLHAGGKFD 120

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS +L + + R N     +F+ G  ++PL        KRG
Sbjct: 121 QNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAHGDAVAPLVVVGDAPGKRG 180

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF   P  F +   +D A L    +  A+L+  V    S  +   EK      EE +
Sbjct: 181 TEVTFLASPDTFKNI-EYDFATLEHRLRELAFLNSGVNIALSDMRHAVEKR-----EEMH 234

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG++ +++    N+  I       + E  G     VE A+ W +   E    + N I 
Sbjct: 235 YSGGVEEFVKYLDRNKKAIVPAPIMVRAEANGI---GVEAALWWNDSYHENVLCFTNNIP 291

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
             +GGTH +G R ALTR +  YAE    K  I++  DD       +LSV + +P+F+ QT
Sbjct: 292 QRDGGTHLAGFRGALTRQVNGYAEANAKKEKIALTGDDCREGLTAVLSVKVPDPKFSSQT 351

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443
           K KLVS + +  VEN L +    +  ++P EA  ++  VI+ +  R   RK RE+ RK+ 
Sbjct: 352 KDKLVSSEVRPVVENVLNEALQAWFEEHPSEAKMIVGKVIQAAAAREAARKARELTRKSP 411

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR  QAVLPLRGKILNV    
Sbjct: 412 LSVSSLPGKLADCQEKDPAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERVR 471

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            +K+  ++QI  L+ ALG     ++  E LRY K+I+MTDADVDGAHI +LLLTFFY++M
Sbjct: 472 PDKMLGSEQIGTLITALGTGISDEFSIEKLRYHKIIVMTDADVDGAHIRTLLLTFFYRQM 531

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605
            D+I+  +L++  PPL+++++G    Y  DE   +  L E  
Sbjct: 532 RDIIDGGYLYIAQPPLYKVSRGKSEQYLKDERALEDYLIETG 573



 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 4/79 (5%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            + E     G+  + + R+KGLGEM   QL ET +D N R+LL+V++      + +  D 
Sbjct: 729 DLFEAVTDAGRKGVTLQRYKGLGEMNPEQLWETTLDTNARSLLQVKV----KEVDEADDI 784

Query: 659 INKLMGTKADERFKFIQER 677
             KLMG   + R  FIQE 
Sbjct: 785 FTKLMGDVVEPRRDFIQEH 803


>gi|167835907|ref|ZP_02462790.1| DNA topoisomerase IV subunit B [Burkholderia thailandensis MSMB43]
          Length = 660

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 241/673 (35%), Positives = 359/673 (53%), Gaps = 41/673 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +  +  Y  +SI++L+GLEPV+ RPGMY   T  +   H+  EVIDNA DE + G+ 
Sbjct: 1   MSTKKPAAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGFG 57

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151
             I V+L  +  ++V D+GRGIP   HP+      +EI+ T LHAGGKFD      Y  S
Sbjct: 58  RQITVTLHPDQSVSVEDDGRGIPFGLHPE-EKVPVVEIVFTRLHAGGKFDKAKGGAYTFS 116

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITF 209
           GGLHGVG+SV NAL+  L VTV R   I    F+ G  + PL  +   R   K GTR+T 
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKIAQLGFADGDVVKPLATQGAGRGEKKSGTRVTV 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P+PK F          L ++ +SKA L   V+     +K         E++ + +  GL
Sbjct: 177 WPNPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVVLVNEK-------TGERQSWKYDDGL 228

Query: 270 KTYLQTKLENRSLISSEI------FTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTI 322
           + YL  ++    L+           +   +          W +AW EE      SY N I
Sbjct: 229 RGYLLDEMNGSELLIPLFEGERFADSRTGDDTFAEGEGASWVVAWSEEGSLARESYVNLI 288

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAG 381
            T  GGTHESGLR  L + +K + EL     + + ++++D+      +LS  + +P+F G
Sbjct: 289 PTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQG 348

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           Q K +L S DA + V +  R   + +L Q+     KL E VI++++ R R  ++ E  + 
Sbjct: 349 QIKERLNSRDAVKLVSSFTRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKIEKKKS 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +  L  PGKL DC        ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN   
Sbjct: 409 SGVAVL--PGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWE 466

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQY---REEDLRYEKVIIMTDADVDGAHIASLLLTF 558
              +++  N ++ D+  A+G             +LRY K+ I++DADVDGAHI  LLLT 
Sbjct: 467 TERDRLFANNEVHDISVAIGVDPHGPDDSVDVSNLRYGKICILSDADVDGAHIQVLLLTL 526

Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KG 610
           F++    LIE+ H+F+  PPLFR+    +G K    +YA D+   + IL++ +K G  + 
Sbjct: 527 FFKHFPQLIERGHVFVARPPLFRVDAPARGKKPAQKLYALDDGELEAILDKLRKDGVRES 586

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669
           +  ISRFKGLGEM A QL +T M+ + R L+ V +       + T   +  LMG  +A  
Sbjct: 587 QWTISRFKGLGEMSAEQLWDTTMNPDTRRLMPVAL--GELDFEATVARMTMLMGKGEAAA 644

Query: 670 RFKFIQERASFID 682
           R  +++E+ + ++
Sbjct: 645 RRNWLEEKGNEVE 657


>gi|114045517|ref|YP_736067.1| DNA gyrase subunit B [Shewanella sp. MR-7]
 gi|113886959|gb|ABI41010.1| DNA gyrase subunit B [Shewanella sp. MR-7]
          Length = 805

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 225/582 (38%), Positives = 347/582 (59%), Gaps = 18/582 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I 
Sbjct: 2   SENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTDIT 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           +++  +G ++V D+GRGIPV  HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG
Sbjct: 62  ITIHVDGSVSVRDDGRGIPVAIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS +L +T+ R+  +  Q ++ G+P  P++         GT I F P  + F D
Sbjct: 121 VSVVNALSKKLQLTIRREGKVHEQFYTHGVPDEPIKVIGDATK-TGTEIRFWPSEETFSD 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      +++        + E F + GG+  ++     
Sbjct: 180 V-EFHFEILAKRVRELSFLNSGVGIRLVDERDN-------KNEFFKYEGGISAFVDYLNR 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++ ++F    E++     TVE A+ W +     I  + N I   +GGTH +G R A
Sbjct: 232 NKTPVNKDVFHFMQERED--GITVEVAMQWNDGYQESIFCFTNNIPQRDGGTHLAGFRSA 289

Query: 338 LTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K   +   DD       ++SV + +P+F+ QTK KLVS + +  
Sbjct: 290 LTRNLNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAA 349

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454
           VE  + +  + YL++NP +A  ++  +++ +  R   RK R    RK A+    LPGKLA
Sbjct: 350 VEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLA 409

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++ 
Sbjct: 410 DCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 469

Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            L+ ALGC   R +Y  +  RY  +IIMTDADVDG+HI +LLLTFF+++M +LIE+ +++
Sbjct: 470 TLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVY 529

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615
           +  PPLF++ +G +  Y  DE    + L      G       
Sbjct: 530 IAQPPLFKVKKGKQEQYLKDEAALTQYLTTQALDGTSIYPSQ 571



 Score =  133 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           + L+      K  + I R+KGLGEM   QL ET MD   R +L+V I+  +         
Sbjct: 722 EALDWTIGEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVG----ADQL 777

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
              LMG + + R  FI+  A  + ++ 
Sbjct: 778 FTCLMGDQVEPRRDFIEANALNVANLD 804


>gi|86147178|ref|ZP_01065494.1| DNA gyrase subunit B [Vibrio sp. MED222]
 gi|218708101|ref|YP_002415722.1| DNA gyrase subunit B [Vibrio splendidus LGP32]
 gi|85835062|gb|EAQ53204.1| DNA gyrase subunit B [Vibrio sp. MED222]
 gi|218321120|emb|CAV17070.1| DNA gyrase subunit B [Vibrio splendidus LGP32]
          Length = 805

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 232/566 (40%), Positives = 345/566 (60%), Gaps = 17/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           SDNYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ N I V
Sbjct: 2   SDNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCNDIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDSSVSVSDDGRGIPTELHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS ++ +T+ R   I +Q +S G P +PL       +K GT I F P  + F + 
Sbjct: 121 SVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGDT-DKTGTEIRFWPSEETFTNI 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V       +E        + + F + GG++ +++    N
Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLIDKRE------EDKMDHFEYEGGIQAFVEHLNTN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  +IF   +E+      TVE A+ W +     I  + N I   +GG H +G R AL
Sbjct: 233 KTPIIQKIFHFDSERDD--GITVEVAMQWNDGYQENIYCFTNNIPQRDGGAHLAGFRAAL 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  + +      K   S   DD       I+SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLAD 455
           E+ + +    +L++NP EA  +   +I+ +  R   RK      RK A+    LPGKLAD
Sbjct: 351 ESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  DE+   + 
Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMNQY 556



 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G ++          + L    K  +  + + R+KGLGEM   QL ET MD   R ++
Sbjct: 708 IKRGERTQEVSS---FVEALNWLVKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMM 764

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R  FI+E A  + ++ 
Sbjct: 765 QVTIEDAVG----ADLLFTTLMGDQVEPRRNFIEENALKVANLD 804


>gi|187927924|ref|YP_001898411.1| DNA topoisomerase IV subunit B [Ralstonia pickettii 12J]
 gi|187724814|gb|ACD25979.1| DNA topoisomerase (ATP-hydrolyzing) [Ralstonia pickettii 12J]
          Length = 661

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 253/673 (37%), Positives = 361/673 (53%), Gaps = 45/673 (6%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           S +  Y  SSI++L+GLEPV+ RPGMY   T      H+  EVIDN+ DE + GY  LI 
Sbjct: 2   SKTSQYSESSIKVLKGLEPVKQRPGMY---TRTDNPLHIVQEVIDNSADEALGGYGKLIA 58

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLH 155
           V+L  +G ++V D+ RGIPV  HP+      +EI+ T LHAGGKFD      Y  SGGLH
Sbjct: 59  VTLHKDGSVSVEDDARGIPVGIHPE-EGVPVVEIVYTRLHAGGKFDKGRGGAYAFSGGLH 117

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--LEKKEKVRNKRGTRITFRPDP 213
           GVG+SV NALS  L VTV R   + +  FS G  + P    K E+   K GTR+   PD 
Sbjct: 118 GVGVSVTNALSTRLEVTVWRDGNVSTLAFSGGDVIEPLTTRKAERGEKKSGTRVRAWPDA 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F  +     A L ++ +SKA L   VK   + ++         E  E+ +  GL+ YL
Sbjct: 178 KYFDSEN-IPQAELQRLLRSKAVLLPGVKVTLTLER-------TGETLEWQYDQGLRGYL 229

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVE----------WAIAWCEENPE-ITSYCNTI 322
              L   S     I   + E         E          W +AW EE      SY N I
Sbjct: 230 VESLAQGSGAEPVIPLFEGEHFADPDKPGEEGFAFGEGASWVVAWTEEGSPVRESYVNLI 289

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFAG 381
            T  GGTHESGLR  L + +K + E+     + + ++S+D+   A  +LS  + +P+F G
Sbjct: 290 PTPAGGTHESGLREGLFQAVKSFVEMHALLPKGVKLMSEDVFARASFVLSAKVLDPQFQG 349

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           Q K +L S DA R V    R   + +L Q+     KL E VI++++ R R  ++ E  + 
Sbjct: 350 QIKERLNSRDAVRLVSTFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAAQKVEKKKG 409

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +  L  PGKL DC  +     ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN   
Sbjct: 410 SGVAVL--PGKLTDCESDDVTRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTWE 467

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTF 558
              +++  N ++ D+  A+G          D   LRY K+ I++DADVDGAHI  LLLT 
Sbjct: 468 TERDRLFANNEVHDIAVAIGVDPHGPNDTVDLSGLRYGKICILSDADVDGAHIQVLLLTL 527

Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KG 610
           F++    LI++ ++ +  PPL+R+    +G K    +YA D+   + I ++ +K G  +G
Sbjct: 528 FFKHFPQLIDRGNVCVARPPLYRVDAPARGKKPAQKLYALDDGELEAIEDKLRKDGVKEG 587

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669
             +ISRFKGLGEM A QL ET M+ + R LL V + +       T + +N LMG  +A  
Sbjct: 588 AWQISRFKGLGEMSAEQLWETTMNPDTRRLLPVALGELGQD--QTINMMNMLMGKGEAGA 645

Query: 670 RFKFIQERASFID 682
           R  +++ R + ++
Sbjct: 646 RRTWLEARGNEVE 658


>gi|113968350|ref|YP_732143.1| DNA gyrase subunit B [Shewanella sp. MR-4]
 gi|113883034|gb|ABI37086.1| DNA gyrase subunit B [Shewanella sp. MR-4]
          Length = 805

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 225/582 (38%), Positives = 347/582 (59%), Gaps = 18/582 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I 
Sbjct: 2   SENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTDIT 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           +++  +G ++V D+GRGIPV  HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG
Sbjct: 62  ITIHVDGSVSVRDDGRGIPVAIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS +L +T+ R+  +  Q ++ G+P  P++         GT I F P  + F D
Sbjct: 121 VSVVNALSKKLQLTIRREGKVHEQFYTHGVPDEPIKVIGDATK-TGTEIRFWPSEETFSD 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      +++        + E F + GG+  ++     
Sbjct: 180 V-EFHFEILAKRVRELSFLNSGVGIRLVDERDN-------KNEFFKYEGGISAFVDYLNR 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++ ++F    E++     TVE A+ W +     I  + N I   +GGTH +G R A
Sbjct: 232 NKTPVNKDVFHFMQERED--GITVEVAMQWNDGYQESIFCFTNNIPQRDGGTHLAGFRSA 289

Query: 338 LTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K   +   DD       ++SV + +P+F+ QTK KLVS + +  
Sbjct: 290 LTRNLNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAA 349

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454
           VE  + +  + YL++NP +A  ++  +++ +  R   RK R    RK A+    LPGKLA
Sbjct: 350 VEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLA 409

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++ 
Sbjct: 410 DCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 469

Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            L+ ALGC   R +Y  +  RY  +IIMTDADVDG+HI +LLLTFF+++M +LIE+ +++
Sbjct: 470 TLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVY 529

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615
           +  PPLF++ +G +  Y  DE    + L      G       
Sbjct: 530 IAQPPLFKVKKGKQEQYLKDEAALTQYLTTQALDGTSIYPSQ 571



 Score =  133 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           + L+      K  + I R+KGLGEM   QL ET MD   R +L+V I+  +         
Sbjct: 722 EALDWTIGEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVG----ADQL 777

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
              LMG + + R  FI+  A  + ++ 
Sbjct: 778 FTCLMGDQVEPRRDFIEANALNVANLD 804


>gi|207743677|ref|YP_002260069.1| dna topoisomerase iv (subunit b) protein [Ralstonia solanacearum
           IPO1609]
 gi|206595076|emb|CAQ62003.1| dna topoisomerase iv (subunit b) protein [Ralstonia solanacearum
           IPO1609]
          Length = 661

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 252/673 (37%), Positives = 356/673 (52%), Gaps = 45/673 (6%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           S +  Y  +SI++L+GLEPV+ RPGMY   T      H+  EVIDNA DE + G+  LI 
Sbjct: 2   SKTPQYSEASIKVLKGLEPVKQRPGMY---TRTDNPLHIVQEVIDNAADEALGGFGKLIA 58

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLH 155
           V+L  +G ++V D  RGIPV  HP+      +EI+ T LHAGGKFD      Y  SGGLH
Sbjct: 59  VTLHKDGSVSVEDEARGIPVGIHPE-EGVPVVEIVFTRLHAGGKFDKGRGGAYAFSGGLH 117

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--LEKKEKVRNKRGTRITFRPDP 213
           GVG+SV NALS  L VTV R   + +  FS G  +      K E+   K GTR+   PD 
Sbjct: 118 GVGVSVTNALSTRLEVTVWRDGNVSTLTFSGGDVIEQLTTRKAERGEKKNGTRVRVWPDA 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F  +     A L ++ +SKA L   VK   + +K         E  E+ +  GL+ YL
Sbjct: 178 KYFDSEN-IPQAELQRLLRSKAVLLPGVKVALTLEKS-------GETVEWQYDQGLRGYL 229

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVE----------WAIAWCEENPE-ITSYCNTI 322
              L   S     I   + E         E          W +AW EE      SY N I
Sbjct: 230 IESLAQGSGADPVIPLFEGEHFADPDKPGEEGFAFGEGASWVVAWTEEGSPVRESYVNLI 289

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFAG 381
            T  GGTHESGLR  L + +K + E+     + + ++ +D+   A  +LS  + +P+F G
Sbjct: 290 PTPAGGTHESGLREGLFQAVKSFVEMHALLPKGVKLMPEDVFARASFVLSAKVLDPQFQG 349

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           Q K +L S DA R V    R   + +L Q+     KL E VI +++ R R  ++ E  + 
Sbjct: 350 QIKERLNSRDAVRLVSTFGRPALELWLNQHVEHGKKLAELVIRQAQARTRAAQKVEKKKG 409

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +  L  PGKL DC  +     ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN   
Sbjct: 410 SGVAVL--PGKLTDCESDDVSRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTWE 467

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTF 558
              +++  N ++ D+  A+G          D   LRY K+ I++DADVDGAHI  LLLT 
Sbjct: 468 TERDRLFANNEVHDIAVAIGVDPHGPTDSVDLSGLRYGKICILSDADVDGAHIQVLLLTL 527

Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHGKG-- 610
           F++    LIE+ ++ +  PPL+R+    +G K    +YA D+   + I ++ +K G    
Sbjct: 528 FFKHFPQLIERGNVCVARPPLYRVDAPARGKKPAQKLYALDDGELEAIEDKLRKDGLKED 587

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669
             +ISRFKGLGEM A QL ET M+ + R LL V I +     + T + +N LMG  +A  
Sbjct: 588 SWQISRFKGLGEMSAEQLWETTMNPDTRRLLPVSIGEPG--PEQTVNMMNMLMGKGEAGA 645

Query: 670 RFKFIQERASFID 682
           R  +++ R + ++
Sbjct: 646 RRTWLEARGNEVE 658


>gi|255068060|ref|ZP_05319915.1| DNA gyrase, B subunit [Neisseria sicca ATCC 29256]
 gi|255047658|gb|EET43122.1| DNA gyrase, B subunit [Neisseria sicca ATCC 29256]
          Length = 834

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 229/596 (38%), Positives = 341/596 (57%), Gaps = 24/596 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + Y A SI++LEGLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ + I V+
Sbjct: 45  EEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCDKITVT 104

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  ++V DNGRG+P   HPK   +S  E+I+T LHAGGKFDN++Y+ISGGLHGVG+S
Sbjct: 105 IHADNSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLHGVGVS 163

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALSD + +T+ R       +F RG    PL+      +K+GT + F    + FG+  
Sbjct: 164 VVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGD-SDKKGTTVRFLASAETFGNV- 221

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +    L K  +  ++L+  V      +++        + E F   GG+  ++Q     +
Sbjct: 222 EYSFDILAKRIRELSFLNNGVDIELIDERD-------GKHESFALSGGVAGFVQYMNRKK 274

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + +  +IF    EK G    +VE A+ W +     +  + N I   +GGTH + LR  +T
Sbjct: 275 TPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMT 331

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y E  +   K  +    DD+      +LSV + +P+F+ QTK KLVS +    V 
Sbjct: 332 RTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVN 391

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADC 456
             +      +L +NP EA  +   +++ +  R   RK RE+ R+   +  L LPGKLADC
Sbjct: 392 EVINQALTDFLEENPNEAKIITSKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADC 451

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  EK+  +Q++  L
Sbjct: 452 QEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATL 511

Query: 517 VQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           + ALG    + ++  E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ ++++ 
Sbjct: 512 ITALGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIA 571

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
            PPL++   G +  Y  DE  K + L          +   R      +  ++L +T
Sbjct: 572 QPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVSDGR-----TIEGAELADT 622



 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 7/106 (6%)

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           ++ +G      +D +  +  L    ++ +  + I R+KGLGEM   QL ET MD   R L
Sbjct: 736 KLYKGENE---YDVDSFETALNILLQNAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRL 792

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           L+V I   +       +    LMG + + R  FI+  A    ++  
Sbjct: 793 LKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 834


>gi|116619148|ref|YP_821304.1| DNA gyrase subunit B [Candidatus Solibacter usitatus Ellin6076]
 gi|116222310|gb|ABJ81019.1| DNA gyrase subunit B [Candidatus Solibacter usitatus Ellin6076]
          Length = 815

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 229/631 (36%), Positives = 360/631 (57%), Gaps = 31/631 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + YD+SSI++LEGLE VR+RP MYIG T E  LHHL  EV+DN++DE +AGYA  IEV++
Sbjct: 13  NVYDSSSIKVLEGLEAVRLRPAMYIGSTGEMGLHHLVYEVVDNSVDEALAGYATHIEVTI 72

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  +TV D+GRGIPV  H +    S  ++++T LHAGGKFD+++Y++SGGLHGVG+S 
Sbjct: 73  HDDNSVTVEDDGRGIPVGIHEE-EGVSAAQVVMTKLHAGGKFDSNSYKVSGGLHGVGVSC 131

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS++L + + R+   ++Q++S G P + L +  K   + GTR+TF+PD  I      
Sbjct: 132 VNALSEKLELEIWREGYTWTQEYSCGKPKADLVRAGKAGKRTGTRVTFKPDSTIMEVAV- 190

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F+   L +  +  A+L+  +K   + ++   EK        F + GG+  +++     +S
Sbjct: 191 FNYDTLAQRLRELAFLNKGLKITLTDERVDPEKVT-----PFEYQGGISEFIKHLNRGKS 245

Query: 282 LISSEIFTGKTEKKGTHRGTV--EWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           ++  +    + E++   +GT+  E A+ + +   E   S+ N I T +GGTH SG R AL
Sbjct: 246 VLHEKPIHFEAEREMPEKGTITMEVALQYNDAYSENVFSFANNINTVDGGTHLSGFRSAL 305

Query: 339 TRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR I  + +     + +  ++  DD+      ++SV + +P+F GQTK KL + D    +
Sbjct: 306 TRTINAFGQKNGLFKDVKENLSGDDVREGLTAVVSVKVPQPQFEGQTKGKL-NSDIAGYM 364

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
              + D    Y  +N     K++   IE S  R   RK R+   RK A+    LPGKLAD
Sbjct: 365 TQFVNDKLSEYFDKNSAVGRKIVGKAIEASRAREAARKARDLTRRKGALDSGGLPGKLAD 424

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +      ELF+VEG+SAGG+AKQ R R  QA+LPL+GKILNV  A  +K+  +++I  
Sbjct: 425 CQEKDPKLCELFLVEGESAGGTAKQGRERRFQAILPLKGKILNVEKARYDKMLGHEEIRC 484

Query: 516 LVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           ++ ALG        +   LRY+K+IIMTDADVDG+HI +LLLTFF++ M +LI +  +++
Sbjct: 485 MITALGTGIGKDDFDVAKLRYDKIIIMTDADVDGSHIRTLLLTFFFRHMNELITRGKVYI 544

Query: 575 ISPPLFRITQGTKSVYAHDEEHK---------QKILEEFKKHGKGKIEISRFKGLGEMLA 625
             PPL+RI +G    Y  DE+           + +  E   +G GK + S       +  
Sbjct: 545 AQPPLYRIKKGKSEKYIKDEKEFTKEIMRRATENLTVEIHSNGDGKPKSS-------LEG 597

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            +L+   ++ ++   +  ++ + L   +   
Sbjct: 598 QELRTFLLNLDEFQQIFHKVERRLRDSRAVD 628



 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 15/129 (11%)

Query: 560 YQEMYDLIEQKHLFLI---SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616
           Y+    L       +     PP   +    +   A  +    ++LE  K  GK    + R
Sbjct: 698 YRRFRALART----IAKFNEPPFVVVK--NEHRDAQPD--WVELLEYVKNEGKKDASVQR 749

Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           +KGLGEM A QL +T M+  KRTLL V +   +      ++  + LMG   + R KFI+E
Sbjct: 750 YKGLGEMNAEQLADTTMNPEKRTLLEVRLEDAVQC----EEIFSTLMGEDVESRRKFIEE 805

Query: 677 RASFIDDVG 685
            A  + ++ 
Sbjct: 806 NALDVKNLD 814


>gi|253996177|ref|YP_003048241.1| DNA topoisomerase IV subunit B [Methylotenera mobilis JLW8]
 gi|253982856|gb|ACT47714.1| DNA topoisomerase (ATP-hydrolyzing) [Methylotenera mobilis JLW8]
          Length = 661

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 237/671 (35%), Positives = 350/671 (52%), Gaps = 42/671 (6%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A   YDA S+++L GLEPVR RPGMY   T   +  H+  EVIDNA DE + G+A  IEV
Sbjct: 2   AEKEYDADSVKVLRGLEPVRARPGMY---TRTDSPTHIVQEVIDNAADEALGGHATNIEV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD----NSTYEISGGLH 155
           ++  +G + V DNGRGIPVE  PK   +  +E++   LHAGGKFD    NS+Y  SGGLH
Sbjct: 59  TVYKDGAVEVTDNGRGIPVEI-PKGETQPAVELVFVQLHAGGKFDKEDENSSYRFSGGLH 117

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPK 214
           GVG+SV NALS  L V V R   +    F  G  + PL +  K  +   GT +   PDPK
Sbjct: 118 GVGVSVTNALSTRLEVKVKRGGKVHGLIFENGHCVEPLAEVGKCLKRDTGTTVKCWPDPK 177

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
            F         +L  + +SKA L   V    S +     +        + +  GL  YL 
Sbjct: 178 YFDS-PKVSIQQLEHLIKSKAVLLRGVSVSLSIEGTDGFEERT-----WTYADGLPQYLD 231

Query: 275 TKLENRSLISSE--------IFTGKTEKKGTHRGT-VEWAIAWCEENPEITSYCNTILTD 325
             +  R +   E         F  +    G  +G    WA+++        SY N I T 
Sbjct: 232 ELIGEREIADDEVPVPIIAGEFYHQENTDGISKGEGAIWALSFGPGGGRGESYVNLIPTL 291

Query: 326 EGGTHESGLRVALTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
            GGTHE+G+R  +   +K + E     +R + + S+D+  +   +L+  + +P+F GQTK
Sbjct: 292 SGGTHEAGMRNGVFEAVKSFMEHHSMMQRGVKVSSEDVWNNVYYVLAAKVLDPQFQGQTK 351

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI 444
            KL + DA + V +A++   + +L QN   A ++ + V   +  R +  ++ E  + T I
Sbjct: 352 EKLTNRDAMKMVASAVKPMMETWLTQNVDHAKRISDLVNRSAAARNKSTQKIEKRKTTGI 411

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               +P KL DC        ELF+VEGDSAGGSAK  RN   Q++LPLRGK+LN     +
Sbjct: 412 N--LMPAKLTDCEAAGTMEAELFLVEGDSAGGSAKMGRNNEFQSLLPLRGKVLNTWEVDA 469

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
            +I  N ++ D+  ALG    +     D   LRY K+ I++DADVDG+HI  LLLT   +
Sbjct: 470 GRIFANSEVHDIFVALGIEPHTLKDNPDFSGLRYGKLCILSDADVDGSHIQVLLLTMLLR 529

Query: 562 EMYDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHG--KGKI 612
               LIE+ H+++  PPL+RI    QG     + +Y  D+  K  ++E+ K+ G  + K+
Sbjct: 530 HAPKLIERGHVYISQPPLYRIDVPAQGKNKPLRKIYVSDDVEKMSMIEKLKREGIAEEKL 589

Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERF 671
            I RFKGLGEM   QL ET +  + R L++V + +   S  +     + LM    +  R 
Sbjct: 590 SIQRFKGLGEMNPEQLWETTLCPDTRRLIQVRLPEGEVS--EALKMFDMLMAKNESASRK 647

Query: 672 KFIQERASFID 682
           ++++ R + ++
Sbjct: 648 EWMERRGNDVE 658


>gi|294054231|ref|YP_003547889.1| DNA gyrase, B subunit [Coraliomargarita akajimensis DSM 45221]
 gi|293613564|gb|ADE53719.1| DNA gyrase, B subunit [Coraliomargarita akajimensis DSM 45221]
          Length = 846

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 226/600 (37%), Positives = 332/600 (55%), Gaps = 22/600 (3%)

Query: 22  KLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEV 81
             ++  E   + +    +  D YD+S I+ LEGLE VR RP MYIG T+E+ LHH   E+
Sbjct: 2   SDQELPENSTADSAQKNAQPDVYDSSKIQKLEGLEGVRKRPDMYIGDTNERGLHHCVFEI 61

Query: 82  IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141
           +DN++DE +AG+ + I VS+  +G  ++ D+GRGIPV+ HPK+     LE+++T LHAGG
Sbjct: 62  VDNSIDEALAGHCSQITVSIHNDGSCSIEDDGRGIPVDIHPKY-QIPALELVMTNLHAGG 120

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KF    Y++SGGLHGVG   VNA+S+   V V R   +   +FSRG+    ++   + + 
Sbjct: 121 KFGKGAYQVSGGLHGVGAKCVNAVSEWFEVEVRRDGKVHKMEFSRGLTTQKMKIIGETKR 180

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             GTRI F PDP+IF     F    L K  +  A+L+  +K  ++ ++       + + E
Sbjct: 181 -TGTRIAFSPDPQIFEATREFKYELLGKRLRELAFLNPGIKIIFTDER-------VSKTE 232

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK-----KGTHRGTVEWAIAWCEENPEI- 315
           EF F  G+  Y+    EN+++I  +  +   E             V+ A  + +   +  
Sbjct: 233 EFIFKDGIAEYVSFLNENKNIIHPDPISFHGEAPTPNPDLDANIVVDIAFQYNDGYSDQI 292

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
            SY N+I   EGGTH SG R ALTR I  YA+       +  ++  DD       ++SV 
Sbjct: 293 YSYANSIHNIEGGTHLSGFRTALTRVINAYAKQNGLLKDKDPNLSGDDAREGLTAVISVK 352

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + EP F GQTKTKL + +    V+    +    Y   NP  A KL++  +  +  R   R
Sbjct: 353 VPEPRFEGQTKTKLSNGEVDGIVQKITGEELKFYFETNPQVAKKLIDKCLNAARAREAAR 412

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
           K RE  RK A+    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R+ QA+LP+R
Sbjct: 413 KARETVRKGALSTGGLPGKLADCSSKDPSVSELYIVEGDSAGGSAKQGRDRATQAILPIR 472

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ-----YREEDLRYEKVIIMTDADVDG 548
           GK+LNV  A  +K+  N +I  L+ A+G           +     RY K+I+MTDADVDG
Sbjct: 473 GKLLNVEKARLDKVLGNNEIRSLITAVGTGIGDHEGDGAFDVSKARYHKIILMTDADVDG 532

Query: 549 AHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           AHI +LLLTF +++M  LIE  ++++  PPL++I +  +  Y  ++    +IL E     
Sbjct: 533 AHIMTLLLTFLFRQMKGLIEAGYVYIAQPPLYKIKRKRREQYVDNDPQLNRILLELGSED 592



 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           ++++  +  G+  + I R+KGLGEM   QL ET MD   R LL+V+I     +       
Sbjct: 763 ELVDNIRAIGRRGLSIQRYKGLGEMNPKQLFETTMDPKSRRLLKVDIADAAAADG----I 818

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            + LMG     R  FI++ A  +  + 
Sbjct: 819 FSMLMGEDVPSRRAFIEDNALNVSHLD 845


>gi|221211613|ref|ZP_03584592.1| DNA topoisomerase IV, B subunit [Burkholderia multivorans CGD1]
 gi|221168974|gb|EEE01442.1| DNA topoisomerase IV, B subunit [Burkholderia multivorans CGD1]
          Length = 660

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 238/673 (35%), Positives = 357/673 (53%), Gaps = 41/673 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +  S  Y  +SI++L+GLEPV+ RPGMY   T  +   H+  EVIDNA DE + GY 
Sbjct: 1   MSTKKPSAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYG 57

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151
             I V+L  +  ++V D+GRGIP   HP       +EI+ T LHAGGKFD      Y  S
Sbjct: 58  KQITVTLHADQSVSVEDDGRGIPFGLHP-DEGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--LEKKEKVRNKRGTRITF 209
           GGLHGVG+SV NAL+  L VTV R   +    F+ G  + P   +   +   K GTR+  
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKLAELGFADGDVVKPLSTQPAGRGEKKSGTRVRV 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P+PK F          L ++ +SKA L   V+     +K         E++ + +  GL
Sbjct: 177 WPNPKYFDSAN-LPLGELQRLLRSKAVLLPGVEVVLVNEKS-------GERQSWKYEDGL 228

Query: 270 KTYLQTKLENRSLISSEI------FTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTI 322
           + YL  ++    L+           +   +          W +AW EE      SY N I
Sbjct: 229 RGYLLDEMNGSELLIPLFEGERFADSRSGDDTFAEGEGASWVVAWSEEGSLVRESYVNLI 288

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAG 381
            T  GGTHESGLR  L + +K + EL     + + ++++D+      +LS  + +P+F G
Sbjct: 289 PTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQG 348

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           Q K +L S DA + V +  R   + +L Q+     KL E VI++++ R R  ++ E  + 
Sbjct: 349 QIKERLNSRDAVKLVSSFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKVEKRKS 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +  L  PGKL DC        ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN   
Sbjct: 409 SGVAVL--PGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWE 466

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLLTF 558
              +++  N ++ D+  A+G             +LRY K+ I++DADVDG+HI  LLLT 
Sbjct: 467 TERDRLFANNEVHDISVAIGVDPHGPDDSVDLSNLRYGKICILSDADVDGSHIQVLLLTL 526

Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KG 610
           F++    LIE+ H+++  PPLFR+    +G K    +YA DE   + IL++ +K G  + 
Sbjct: 527 FFKHFPQLIERGHVYVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDGVRET 586

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669
           +  ISRFKGLGEM A QL +T M+ + R L+ V++       + T   +  LMG  +A  
Sbjct: 587 QWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKL--GELDYETTVARMTMLMGKGEAAA 644

Query: 670 RFKFIQERASFID 682
           R  +++E+ + ++
Sbjct: 645 RRGWLEEKGNDVE 657


>gi|197334084|ref|YP_002154784.1| DNA gyrase, B subunit [Vibrio fischeri MJ11]
 gi|197315574|gb|ACH65021.1| DNA gyrase, B subunit [Vibrio fischeri MJ11]
          Length = 805

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 226/566 (39%), Positives = 345/566 (60%), Gaps = 17/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I V
Sbjct: 2   SENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDNSVSVSDDGRGIPTSIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+++ +T+ R   I  Q +  G P +PL    K  +  GT+I F P  + F + 
Sbjct: 121 SVVNALSEKVELTIHRAGEIHQQVYHHGEPEAPLAVIGKT-DTTGTKIRFWPSEETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V       +E        + + F + GG++ ++Q    N
Sbjct: 180 V-FVYEILAKRLRELSFLNSGVSIKLQDMRE------EDKADHFMYEGGIQAFVQHLNRN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  ++F   +E++     +VE ++ W +     I  + N I   +GGTH +G R AL
Sbjct: 233 KTPIHQKVFHFDSERED--GISVEVSMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSAL 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNTFMDKEGFSKKAKAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 351 ESAMGEKLSEFLAENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPGLSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVGT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  DE+   + 
Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMAEY 556



 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            +  L    K  +    + R+KGLGEM   QL ET MD   R +++V IN  +       
Sbjct: 720 FEDALAWLTKESRRGFSLQRYKGLGEMNPEQLWETTMDPESRRMMQVTINDAV----AAD 775

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           +    LMG + + R  FI+E A  + ++ 
Sbjct: 776 ELFTTLMGDQVEPRRNFIEENALRVSNLD 804


>gi|307942709|ref|ZP_07658054.1| DNA gyrase, B subunit [Roseibium sp. TrichSKD4]
 gi|307773505|gb|EFO32721.1| DNA gyrase, B subunit [Roseibium sp. TrichSKD4]
          Length = 817

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 241/581 (41%), Positives = 348/581 (59%), Gaps = 16/581 (2%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85
             +PD   F + +    Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA
Sbjct: 4   TSLPDQTPFDDPNQGAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNA 63

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AG+A+ + V L+ +G +TV DNGRGIP + H +    S  E+I+T LHAGGKFD 
Sbjct: 64  IDEALAGHADHVTVCLNADGSVTVADNGRGIPTDVHSE-EGVSAAEVIMTQLHAGGKFDQ 122

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +L + + R +     +F+ G  ++PL+       ++GT
Sbjct: 123 NSYKVSGGLHGVGVSVVNALSTKLELRIWRNDQEHHMEFAHGEAVAPLKVVGPANGQKGT 182

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           ++TF P P+ F     FD   L    +  A+L+  V+   +  + + E+      EE Y+
Sbjct: 183 QVTFLPSPETFTKT-EFDFGTLEHRLRELAFLNSGVRIILTDKRGVEERA-----EELYY 236

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILT 324
            GGL+ +++     +  +     T  TEK G    TVE A+ W +   E    + N I  
Sbjct: 237 EGGLEAFVRYLDRAKHPLIETPITISTEKDGI---TVEAAMWWNDSYHEQVLCFTNNIPQ 293

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTR +  YAE T    K  +S+  DD       +LSV + +P+F+ Q
Sbjct: 294 RDGGTHLAGFRAALTRQVTGYAESTGLLKKEKVSVTGDDCREGLTCVLSVKVPDPKFSSQ 353

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TK KLVS + +  VE+ +      +  +NP  A  ++  V+E +  R   RK RE   RK
Sbjct: 354 TKDKLVSSEVRPVVESQMSQALSEWFEENPAPAKAVVSKVVEAASAREAARKARELTRRK 413

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            A+    LPGKLADC +  A   ELF+VEGDSAGGSAKQ R+R NQAVLPLRGKILNV  
Sbjct: 414 GALDIASLPGKLADCQERDASKAELFLVEGDSAGGSAKQGRHRENQAVLPLRGKILNVER 473

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +K+ ++ +I  L+ ALG     +    E LRY K+IIMTDADVDGAHI +LLLTFF+
Sbjct: 474 ARFDKMLSSNEIGTLITALGTGIGKEEFNVEKLRYHKIIIMTDADVDGAHIRTLLLTFFF 533

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++M +L+E  ++++  PPL+++T+G    Y  D+   +  L
Sbjct: 534 RQMPELVENGYIYIAQPPLYKVTRGKSEQYLKDQAALENYL 574



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 4/88 (4%)

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           + +L++    G+  I + R+KGLGEM   QL ET +D N R+LL+V++        D  D
Sbjct: 733 RALLQQIFAFGQKGISMQRYKGLGEMNPEQLWETTLDPNVRSLLQVKV----READDADD 788

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
              KLMG + D R +FIQ+ A  + ++ 
Sbjct: 789 IFTKLMGDEVDPRREFIQDNALNVANLD 816


>gi|261378453|ref|ZP_05983026.1| DNA gyrase, B subunit [Neisseria cinerea ATCC 14685]
 gi|269145238|gb|EEZ71656.1| DNA gyrase, B subunit [Neisseria cinerea ATCC 14685]
          Length = 796

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 224/571 (39%), Positives = 332/571 (58%), Gaps = 19/571 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95
            +   + Y A SI++LEGLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V DNGRG+P   HPK   +S  E+I+T LHAGGKFDN++Y+ISGGLH
Sbjct: 62  KITVTIHADNSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS+ + +T+ R       +F RG    PL+      +K+GT + F    + 
Sbjct: 121 GVGVSVVNALSNWVTLTIYRDGKEHFVRFVRGETEEPLKVVGD-SDKKGTTVRFLASAET 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           FG+   +    L K  +  ++L+  V    + +++        + E F   GG+  ++Q 
Sbjct: 180 FGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
               ++ +  +IF    EK G    +VE A+ W +     +  + N I   +GGTH + L
Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R  +TR I  Y E  +   K  +    DD+      +LSV + +P+F+ QTK KLVS + 
Sbjct: 289 RQVMTRTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEI 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
              V   +      +L +NP EA  +   +++ +  R   RK RE+ R+   +  L LPG
Sbjct: 349 GPVVNEVINQALTDFLEENPNEAKIITSKIVDAARAREAARKAREITRRKGVMDGLGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSA Q R+R  QA+LPL+GKILNV  A  EK+  +Q
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468

Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALG     +    E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ 
Sbjct: 469 EVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++++  PPL++   G +  Y  DE  K + L
Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWL 559



 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 592 HDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651
           +     ++ L+   ++ +  + I R+KGLGEM   QL ET MD + R LL+V I   +  
Sbjct: 706 YPVGSFEEALDILLQNVQKGMSIQRYKGLGEMNPEQLWETTMDPSVRRLLKVRIEDAI-- 763

Query: 652 LKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
                +    LMG + + R  FI+  A    ++  
Sbjct: 764 --AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796


>gi|119773158|ref|YP_925898.1| DNA topoisomerase (ATP-hydrolyzing) [Shewanella amazonensis SB2B]
 gi|119765658|gb|ABL98228.1| DNA gyrase subunit B [Shewanella amazonensis SB2B]
          Length = 805

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 224/575 (38%), Positives = 346/575 (60%), Gaps = 18/575 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
           + + YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I 
Sbjct: 2   SENTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSEIT 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           +++  +G ++V D+GRGIPV  HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG
Sbjct: 62  ITIHVDGSVSVKDDGRGIPVAIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS +L +T+ R   +  Q ++ G+P +P++         GT + F P  + F D
Sbjct: 121 VSVVNALSKKLQLTIRRDGKVHEQFYTHGVPDAPIKVVGDATK-TGTEVRFWPSEETFSD 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      +++  +       E F + GG+  +++    
Sbjct: 180 TL-FHFDILAKRVRELSFLNSGVGIRLVDERDNKD-------EFFKYEGGISAFVEYLNR 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++ +IF    E++     TVE A+ W +     I  + N I   +GGTH +G R A
Sbjct: 232 NKTPVNKDIFHFAQERED--GITVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGA 289

Query: 338 LTRGIKKYAE--LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K   +   DD       ++SV + +P+F+ QTK KLVS + +  
Sbjct: 290 LTRNLNNYMEAEGYNKKNKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSA 349

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454
           VE  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLA
Sbjct: 350 VEQTMGEKLGDYLLENPGDAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLA 409

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++ 
Sbjct: 410 DCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 469

Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            L+ ALGC   R +Y  +  RY  +IIMTDADVDG+HI +LLLTFF+++M +LIE+ +++
Sbjct: 470 TLITALGCGIGRDEYDPDKTRYHYIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVY 529

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +  PPL+++ +G    Y  D+    + L      G
Sbjct: 530 IAQPPLYKVKKGKHEQYLKDDPALTEFLTTGALDG 564



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K           + L+      K  + I R+KGLGEM   QL ET MD   R +L
Sbjct: 708 VQRGEKVKPVTS---FIEALDWLVGESKRGLYIQRYKGLGEMNPEQLWETTMDPESRRML 764

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R  FI+  A  + ++ 
Sbjct: 765 QVTIEDAI----AADQLFTCLMGDQVEPRRDFIEANALNVANLD 804


>gi|254439392|ref|ZP_05052886.1| DNA gyrase, B subunit [Octadecabacter antarcticus 307]
 gi|198254838|gb|EDY79152.1| DNA gyrase, B subunit [Octadecabacter antarcticus 307]
          Length = 805

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 226/578 (39%), Positives = 335/578 (57%), Gaps = 16/578 (2%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
            Q   + Y A SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DN +DE +AG+A+
Sbjct: 4   EQQKPEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGHAD 63

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            + V +  +G ++V DNGRGIPV  H +    S  E+I+T LHAGGKFD+++Y++SGGLH
Sbjct: 64  AVNVKIHDDGSVSVSDNGRGIPVGIH-EGEGVSAAEVIMTQLHAGGKFDSNSYKVSGGLH 122

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD L + + R       +F  G  +  LE      ++ GT + F      
Sbjct: 123 GVGVSVVNALSDYLELRIWRNGKEHYARFEGGFTVKHLEVVADCGDRTGTEVRFLASLDT 182

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F ++  F    L K  +  A+L+  V+   + ++            E Y+ GG+K +++ 
Sbjct: 183 FSNR-EFYFETLEKRLRELAFLNSGVRIILTDER-----PAEHLVSELYYDGGVKEFVKY 236

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
              +++ I  E      E+       VE A+ W +   E+   + N I   +GGTH +G 
Sbjct: 237 LDRSKTSILPEPIYVIGERDEI---VVEVAMWWNDSYNEMVLPFTNNIPQRDGGTHMAGF 293

Query: 335 RVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR I  YA+ +   +        DD       +LS+ + +P+F+ QTK KLVS + 
Sbjct: 294 RAALTRTINNYAQSSGIAKREKISFTGDDAREGLTCVLSIKVPDPKFSSQTKDKLVSSEV 353

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
           +  VEN + +    +  +NP  A  ++  ++E +  R   RK R+   RKTA+    L G
Sbjct: 354 RPAVENIMNEKLSEWFEENPQIAKIVVSKIVEAAHAREAARKARDLTRRKTAMDVNFLAG 413

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL DCS+     TE+F+VEGDSAGGSA+  R+R  QA+LPL+GKILNV  A  +++  +Q
Sbjct: 414 KLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQ 473

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           +I +LV ALG    R ++  E LRY K++IMTDADVDGAHI +LLLTFF+++M +LIE+ 
Sbjct: 474 EIGNLVMALGTGIGRDEFNIEKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQMPELIERG 533

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           HL++  PPL+++++G   VY  D+      L E    G
Sbjct: 534 HLYIAQPPLYKVSRGKSEVYLKDQAAMNDYLTEQGVEG 571



 Score =  136 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L+   + G+  + + R+KGLGEM  SQL ET +D + RTLL+V++      + +  D 
Sbjct: 722 DLLKAVLEEGERGLSLQRYKGLGEMNPSQLWETTLDPDARTLLQVKVED----VAEADDL 777

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R +FIQ+ A  ++++ 
Sbjct: 778 FTKLMGDVVEPRREFIQQNALNVENLD 804


>gi|223997382|ref|XP_002288364.1| DNA topoisomerase [Thalassiosira pseudonana CCMP1335]
 gi|220975472|gb|EED93800.1| DNA topoisomerase [Thalassiosira pseudonana CCMP1335]
          Length = 678

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 253/688 (36%), Positives = 348/688 (50%), Gaps = 51/688 (7%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
           + ++ +  Y A+ I +L GLEPVR RPGMYIG T    LHHL  EV+DN++DE +AG+A+
Sbjct: 3   STEAINGAYSANQITVLSGLEPVRKRPGMYIGSTGPDGLHHLVYEVLDNSVDEALAGHAS 62

Query: 96  LIEVSLDG-------------NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142
           +I + L                   T+ D+GRGIP + HP     S LE +LT LHAGGK
Sbjct: 63  MISMVLHDAPGVDDSGENEKVGNCCTITDDGRGIPTDLHP-TTKISALETVLTVLHAGGK 121

Query: 143 FDN----STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE- 197
           FDN    S Y++SGGLHGVGISVVNALS+ + V V R +            ++       
Sbjct: 122 FDNSQQGSGYKVSGGLHGVGISVVNALSEFVEVRVDRGSKSAENDIENTSSVAYKTSLVQ 181

Query: 198 --KVRNKRGTRITFRPDPKIF-----GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
               + K GT +TF PD  +F          FDA+RL       AYL+  +       + 
Sbjct: 182 KLYSQRKAGTTVTFLPDITVFKGVNGKPDITFDASRLASRMDEIAYLNAGLVLTLQDKRI 241

Query: 251 IAEKYGIPEKEE---FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307
           ++ +  + +      F+      T L       S  S  I           R       +
Sbjct: 242 LSGRSKVDKSNIVTVFHHADDGATLLFHGTITPSSSSPGIQQLPITIDAALR------YS 295

Query: 308 WCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMIS 365
               +  I S+ N I T +GG+H  GL+  LTR + + A      +    ++  D +   
Sbjct: 296 ANTYSENILSFVNNIRTKDGGSHVEGLKSCLTRTLNQSARRLGKLKDGDSNLSGDFVREG 355

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              I+SV + EPEF GQTK +L + + +  VE AL      +   NP     + E     
Sbjct: 356 LTAIISVSVSEPEFEGQTKGRLGNPEVRPAVETALGAELTKFFDFNPDILNIIYENASRA 415

Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
               L  +  RE V RKT ++   LPGKLADC+      TELFIVEGDSA GSAKQ R+R
Sbjct: 416 QAAALAAKAAREVVRRKTLLQSTVLPGKLADCASRDLTETELFIVEGDSAAGSAKQGRDR 475

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR-SQYREEDLRYEKVIIMTD 543
             QA+LPLRGKILN+  A  E+I  N ++  L+ A G   + ++  E  LRY K++IMTD
Sbjct: 476 RTQAILPLRGKILNIERAAPERIYQNSELQGLISACGLGIKGAELEEASLRYGKIVIMTD 535

Query: 544 ADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG----TKSVYAHDEEHKQK 599
           ADVDGAHI  LLLTFF++   +L+E+ +L++  PPL++I  G     K  Y   +E K  
Sbjct: 536 ADVDGAHIRVLLLTFFFRYQRELVEKGYLYIAQPPLYKIVTGTGRARKEKYTFSDEEKDA 595

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
            L E    G   + I RFKGLGEM+  QL ET MD + RTLL+V +N           ++
Sbjct: 596 YLREDLSEGN--VMIQRFKGLGEMMPKQLWETTMDPDGRTLLQVSVND----CALADQTL 649

Query: 660 NKLMGTKADERFKFIQERASFID--DVG 685
           + LMG     R  FI E A  +   D+ 
Sbjct: 650 DILMGDAVAPRRNFISEHAESLKLGDLD 677


>gi|121998014|ref|YP_001002801.1| DNA gyrase subunit B [Halorhodospira halophila SL1]
 gi|121589419|gb|ABM61999.1| DNA gyrase subunit B [Halorhodospira halophila SL1]
          Length = 807

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 221/578 (38%), Positives = 345/578 (59%), Gaps = 19/578 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
               +  YD+ SI++L GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ +
Sbjct: 2   TTEITPQYDSESIQVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVLDNSIDEALAGHCS 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V+L  +  +TV DNGRGIPV+ H +       ++I+T LHAGGKFD+++Y++SGGLH
Sbjct: 62  EITVTLHADHSVTVTDNGRGIPVDIHAE-EGVPAAQVIMTVLHAGGKFDDNSYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS+ L + + R+  +  Q+++ G P++ L+   +   + GTRITF+P   I
Sbjct: 121 GVGVSVVNALSERLRLVIEREGKVHVQEYADGAPVTSLKVVGET-EQTGTRITFKPSEAI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   ++   L K  +  ++L+  V+     ++   E       + F + GG++ +++ 
Sbjct: 180 FTEV-QYNYDILAKRFRELSFLNPGVRVVLKDERTEKE-------DVFEYTGGIRAFVEH 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              N++ +   +F     + G     V+ A+ W +     I  + N I   +GGTH +G 
Sbjct: 232 LNRNKTPLHPTVFYVTAWRDGV---GVDVAMQWNDSYQENIFCFTNNIPQRDGGTHLAGF 288

Query: 335 RVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y E     + +      +D+      ++SV   +P+F+ QTK KLVS + 
Sbjct: 289 RGALTRTVNGYLEAEGYLKKLKSTPSGEDVREGLTAVVSVKAPDPKFSSQTKDKLVSSEV 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451
           +  VE+ L +    +L ++P EA  + E VI+ S  R   RK R    RK A+    LPG
Sbjct: 349 KGIVESLLSESLQTFLAEHPPEARAIAERVIQASRAREAARKAREMTRRKDALDIAGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +E+++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ 
Sbjct: 409 KLADCQERDPAKSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSA 468

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALGC   R  +  + LRY ++IIMTDADVDG+HI +LLLTFFY++M +L+E+ 
Sbjct: 469 EVGTLITALGCGIGRDDFDPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMRELVERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++++  PPL++I +G +  Y  DE    + L E    G
Sbjct: 529 NVYIAQPPLYKIKRGKQEHYVKDERELTEYLLELALDG 566



 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ +E   +  K    I R+KGLGEM   QL ET M+   R LLRV I+  +       
Sbjct: 722 LREAVEWLMEEAKRGQTIQRYKGLGEMNPDQLWETTMNPETRRLLRVTIDDAV----AAD 777

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           +    LMG   + R  FI+  A  + ++ 
Sbjct: 778 EIFTTLMGDHVEPRRDFIERNALAVSNLD 806


>gi|163733266|ref|ZP_02140710.1| DNA gyrase subunit B [Roseobacter litoralis Och 149]
 gi|161393801|gb|EDQ18126.1| DNA gyrase subunit B [Roseobacter litoralis Och 149]
          Length = 804

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 229/580 (39%), Positives = 338/580 (58%), Gaps = 17/580 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
             N+ A + Y A+SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DN +DE +AG+
Sbjct: 2   SENEQAPEEYGANSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGH 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ + V +  +  ++V DNGRGIPV  H +    S  E+I+T LHAGGKFD+++Y++SGG
Sbjct: 62  ADAVTVKIHADSSISVSDNGRGIPVGIHEE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALSD L + + R+      +F  G  +  L+      ++ GT + F    
Sbjct: 121 LHGVGVSVVNALSDWLELRIWREGKEHVARFEGGFTVDHLKVVGDT-DRTGTEVRFMAST 179

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
             F +   +    L K  +  A+L+  V+     ++   E          ++ GG+K ++
Sbjct: 180 DTFSNL-EYSFETLEKRLRELAFLNSGVRIILIDERPAEELRSE-----LFYEGGVKEFV 233

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHES 332
           +    ++S +  E      EK       VE A+ W +   E    + N I   +GGTH +
Sbjct: 234 KYLDRSKSSVMPEPIFITGEKDDI---GVEVAMWWNDSYHENVLPFTNNIPQRDGGTHMA 290

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR I  YA+ +    K  +S   DD       +LSV + +P+F+ QTK KLVS 
Sbjct: 291 GFRGALTRTINNYAQSSGIARKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 350

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           + +  VE  + +    +  +NP EA  ++  +IE +  R   RK R+   RKTA+    L
Sbjct: 351 EVRPAVEGLVNEKLAEWFEENPSEAKIVVGKIIEAAHAREAARKARDLTRRKTAMDVNFL 410

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
            GKL DCS+     TE+F+VEGDSAGGSA+  R+R  QA+LPL+GKILNV  A  +++  
Sbjct: 411 AGKLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLG 470

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q+I +LV ALG    R ++  + LRY K++IMTDADVDGAHI +LLLTFFY++M  LIE
Sbjct: 471 SQEIGNLVMALGTGIGRDEFNIDKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPQLIE 530

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           Q HL++  PPL+++++G   VY  DE   ++ L +    G
Sbjct: 531 QGHLYIAQPPLYKVSRGKSEVYLKDEAAMEEYLVQQGIDG 570



 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L    + G+  + + R+KGLGEM   QL ET +D + RTLL+V+++     + +  D 
Sbjct: 721 DLLNAILQEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVKVDD----MAEADDL 776

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R +FIQ+ A  ++++ 
Sbjct: 777 FTKLMGDVVEPRREFIQQNALSVENLD 803


>gi|254486166|ref|ZP_05099371.1| DNA gyrase, B subunit [Roseobacter sp. GAI101]
 gi|214043035|gb|EEB83673.1| DNA gyrase, B subunit [Roseobacter sp. GAI101]
          Length = 804

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 224/578 (38%), Positives = 336/578 (58%), Gaps = 17/578 (2%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           ++   + Y A SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DN +DE +AG+A+
Sbjct: 4   DKQIPEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGHAD 63

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            + V++  +  ++V DNGRGIPV  H +    S  E+I+T LHAGGKFD+++Y++SGGLH
Sbjct: 64  AVNVTIHEDNSVSVSDNGRGIPVGIH-QGEGVSAAEVIMTQLHAGGKFDSNSYKVSGGLH 122

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD L + + R+      +F  G     L       ++ GT + F      
Sbjct: 123 GVGVSVVNALSDWLELRIWREGKEHVARFEGGFTTEHLTVVGPT-DRTGTEVRFMASTST 181

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   +    L K  +  A+L+  V+   + ++        P + E ++ GG+K +++ 
Sbjct: 182 FSNL-EYSFETLEKRLRELAFLNSGVRIILTDER-----PAEPLRSELFYEGGVKEFVKY 235

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
              +++ +  E      EK       VE A+ W +   E    + N I   +GGTH +G 
Sbjct: 236 LDRSKTSVMPEPIFITGEKDDI---GVEVAMWWNDSYHENVLPFTNNIPQRDGGTHMAGF 292

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR I  YA+ +    K  ++   DD       +LSV + +P+F+ QTK KLVS + 
Sbjct: 293 RGALTRTINNYAQSSGIAKKEKVTFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEV 352

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
           +  VE  + +    +  +NP EA  ++  +IE +  R   RK R+   RKTA+    L G
Sbjct: 353 RPAVEGLVSEKLAEWFEENPTEARIVVGKIIEAAHAREAARKARDLTRRKTAMDVNFLAG 412

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL DCS+     TE+F+VEGDSAGGSA+  R+R  QA+LPL+GKILNV  A  +++  +Q
Sbjct: 413 KLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQ 472

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           +I +LV ALG    R ++  + LRY K++IMTDADVDGAHI +LLLTFFY++M  LIE  
Sbjct: 473 EIGNLVMALGTGIGRDEFNIDKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPQLIENG 532

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           HL++  PPL+++++G   VY  D+   +  L +    G
Sbjct: 533 HLYIAQPPLYKVSRGKSEVYLKDQAAMEDYLIQQGIDG 570



 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L+     G+  + + R+KGLGEM   QL ET +D + RTLL+V +      + +  D 
Sbjct: 721 DLLDAILAEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVRVED----MAEADDL 776

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R +FIQ+ A  ++++ 
Sbjct: 777 FTKLMGDVVEPRREFIQQNALNVENLD 803


>gi|259417608|ref|ZP_05741527.1| DNA gyrase, B subunit [Silicibacter sp. TrichCH4B]
 gi|259346514|gb|EEW58328.1| DNA gyrase, B subunit [Silicibacter sp. TrichCH4B]
          Length = 805

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 224/580 (38%), Positives = 338/580 (58%), Gaps = 16/580 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
             N+ A   Y A SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DN +DE +AG+
Sbjct: 2   SENEQAPTEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGH 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ + V++  +  ++V DNGRGIPV+ H +    S  E+I+T LHAGGKFD+++Y++SGG
Sbjct: 62  ADRVTVTIHADSSVSVSDNGRGIPVDIHAE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALSD L + + R       +F RG  +  L       ++ GT + F    
Sbjct: 121 LHGVGVSVVNALSDWLELRIWRNGKEHVARFERGDTVKHLAVVGDCGDRTGTEVRFLAST 180

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
             F +   +    L K  +  A+L+  V+   + ++          + E ++ GG+  ++
Sbjct: 181 DTFSNL-EYSFETLEKRLRELAFLNSGVRIVVTDER-----PAERLESELFYEGGVNEFV 234

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +    +++ +       K EK       +E A+ W +     +  + N I   +GGTH +
Sbjct: 235 KYLDRSKTPVMDAPIYIKGEKDDI---GIEIAMWWNDSYHETVLPFTNNIPQRDGGTHVA 291

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR I  YA+ +    K  +S   DD       +LSV + +P+F+ QTK KLVS 
Sbjct: 292 GFRGALTRTINNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 351

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           + +  VE+ + +    +  +NP  A +++  +IE +  R   RK RE   RKTA+    L
Sbjct: 352 EVRPVVESLMGEKLAEWFEENPHVAKQVVGKIIEAALAREAARKARELTRRKTAMDVNFL 411

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
            GKL DCS+     TE+F+VEGDSAGGSA+  R+R  QA+LPL+GKILNV  A  +++  
Sbjct: 412 AGKLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLG 471

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q+I +LV ALG    R ++  E LRY K++IMTDADVDGAHI +LLLTFFY++M +LIE
Sbjct: 472 SQEIGNLVMALGTGIGRDEFNIEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIE 531

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             +L++  PPL+++++G   VY  D+   ++ L      G
Sbjct: 532 GGYLYIAQPPLYKVSRGKSEVYLKDQAAMEEYLINQGVDG 571



 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L+   + G+  + + R+KGLGEM   QL ET +D + RTLL+V ++     + +  D 
Sbjct: 722 DLLKAILEEGEKGLTLQRYKGLGEMNPDQLWETTLDPDARTLLQVRVDD----MIEADDL 777

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R +FIQ+ A  ++++ 
Sbjct: 778 FTKLMGDVVEPRREFIQKNALSVENLD 804


>gi|34496568|ref|NP_900783.1| DNA topoisomerase IV subunit B [Chromobacterium violaceum ATCC
           12472]
 gi|34102422|gb|AAQ58788.1| topoisomerase IV subunit B [Chromobacterium violaceum ATCC 12472]
          Length = 655

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 245/663 (36%), Positives = 363/663 (54%), Gaps = 36/663 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             YD SS+R+L+GLEPV+ RPGMY   TD     H+  EVIDNA DE + G+A  I V++
Sbjct: 4   QQYDESSVRVLKGLEPVKERPGMYTRTTDPT---HICQEVIDNAADEALGGFARKIAVTV 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS---TYEISGGLHGVG 158
             +G L+V D+GRGIPV  HP+      +E++ T LHAGGKF+      Y  SGGLHGVG
Sbjct: 61  HQDGSLSVEDDGRGIPVGLHPQ-EGVPVVELVYTRLHAGGKFNKKDGGAYAFSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR-GTRITFRPDPKIFG 217
           +SV NALS  L V V R+  +    FS G  + PL +      +  GTR+   PD K F 
Sbjct: 120 VSVTNALSTRLEVEVKREGGVHRLVFSGGDVIEPLARVGDCGPRTSGTRVRVWPDGKYFE 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               +    L ++ ++KA L   V    +      EK    E + + +P GLK+YL    
Sbjct: 180 S-PRYSMQELERLLRAKAVLLPGVAVTLT-----VEKPSGDEVKAWQYPDGLKSYLAELC 233

Query: 278 ENRSLISS----EIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESG 333
                ++     E + G   ++       +WA+AW E+     SY N I T  GGTHE+G
Sbjct: 234 NGDEPVAPLFAGEAYIGDDHEQFAKGEGAQWAMAWFEDGASGESYVNLIPTPVGGTHEAG 293

Query: 334 LRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           LR  +   +K + +      R + ++++D+      +LS  + +P+F GQTK KL S DA
Sbjct: 294 LRAGVYDAVKSFIDHHNLLPRGVKLMAEDVWSRVRFVLSARVLDPQFQGQTKDKLTSRDA 353

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
            + +    RDP + +L Q+     K+ E  I +++ RL+  K+ E  + + +  L  PGK
Sbjct: 354 LKLISGLARDPVELWLNQHVEAGKKIAELAIRQAQSRLKSVKKVEKKKGSGVAVL--PGK 411

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L DC        ELF+VEGDSAGGSAK AR++  QA+LPLRGK+LN      +++ +N +
Sbjct: 412 LTDCESEDIERNELFLVEGDSAGGSAKLARDKEYQAILPLRGKVLNSWETDRDQLFSNAE 471

Query: 513 IMDLVQALGCRTRSQYREEDL---RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           I D+  A+G        + DL   RY K+ I++DADVDG+HI  LLLT F++    L+E 
Sbjct: 472 IHDIAVAIGVDPHGPNDDPDLSGQRYGKIAILSDADVDGSHIQVLLLTLFFRHFPRLVEN 531

Query: 570 KHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHG--KGKIEISRFKGL 620
            ++++  PPLFR+    QG     + +YA DE     IL+  +  G  +    ISRFKGL
Sbjct: 532 GNIYIAQPPLFRVDVPGQGKTRPPRKLYALDEGEMSAILDRLRSEGVRENAWSISRFKGL 591

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQERAS 679
           GEM   QLK+T M+ + R L+RV++   +  L++T D    LMG  +A  R  +++ + +
Sbjct: 592 GEMNPEQLKDTTMNPDTRRLVRVQVRPGM--LQETLDMFVMLMGKGEASSRRGWMEAKGN 649

Query: 680 FID 682
            ++
Sbjct: 650 EVE 652


>gi|115352447|ref|YP_774286.1| DNA topoisomerase IV subunit B [Burkholderia ambifaria AMMD]
 gi|115282435|gb|ABI87952.1| DNA topoisomerase IV subunit B [Burkholderia ambifaria AMMD]
          Length = 660

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 245/676 (36%), Positives = 362/676 (53%), Gaps = 47/676 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +  S  Y  +SI++L+GLEPV+ RPGMY   T  +   H+  EVIDNA DE + GY 
Sbjct: 1   MSTKKPSAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYG 57

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151
             I V+L  +  ++V D+GRGIP   HP+      +EI+ T LHAGGKFD      Y  S
Sbjct: 58  KQIIVTLHTDQSVSVEDDGRGIPFGMHPE-EGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITF 209
           GGLHGVG+SV NAL+  L VTV R   I    F+ G  + PL  +   R   K GTR+  
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKIAELGFADGDVVKPLATQGAGRGEKKSGTRVQV 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P+PK F          L ++ +SKA L   V+     +K         E++ + +  GL
Sbjct: 177 WPNPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVVLVNEK-------TGERQTWKYEDGL 228

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE---------WAIAWCEENP-EITSYC 319
           + YL  ++    L+       + E+    R T E         W +AW EE      SY 
Sbjct: 229 RGYLLDEMNGSELLIP---LFEGERFADARSTDETFAEGEGASWVVAWSEEGSLVRESYV 285

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPE 378
           N I T  GGTHESGLR  L + +K + EL     + + ++++D+      +LS  + +P+
Sbjct: 286 NLIPTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQ 345

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
           F GQ K +L S DA + V +  R   + +L Q+     KL E VI++++ R R  ++ E 
Sbjct: 346 FQGQIKERLNSRDAVKLVSSFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKVEK 405

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +  L  PGKL DC        ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN
Sbjct: 406 RKSSGVAVL--PGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLN 463

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLL 555
                 +++  N ++ D+  A+G    S        +LRY K+ I++DADVDG+HI  LL
Sbjct: 464 TWETERDRLFANNEVHDISVAIGVDPHSPDETVDLSNLRYGKICILSDADVDGSHIQVLL 523

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG- 608
           LT F++    LIE+ H+ +  PPLFR+    +G K    +YA DE   +  L++ +K G 
Sbjct: 524 LTLFFKHFPQLIERGHVHVARPPLFRVDAPARGKKPAQKLYALDEGELEATLDKLRKDGV 583

Query: 609 -KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-K 666
            + +  ISRFKGLGEM A QL +T M+ + R L+ V++       + T   +  LMG  +
Sbjct: 584 RETQWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKL--GELDYESTVARMTMLMGKGE 641

Query: 667 ADERFKFIQERASFID 682
           A  R  +++E+ + ++
Sbjct: 642 AAARRGWLEEKGNDVE 657


>gi|260553769|ref|ZP_05826039.1| type IIA topoisomerase [Acinetobacter sp. RUH2624]
 gi|260405073|gb|EEW98573.1| type IIA topoisomerase [Acinetobacter sp. RUH2624]
          Length = 822

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 227/581 (39%), Positives = 342/581 (58%), Gaps = 19/581 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85
                S +   Q+    YD+SSI++L GL+ VR RPGMYIG TD+   LHH+  EV+DNA
Sbjct: 2   SSESQSASQTEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNA 61

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AG+ + I V++  +  ++V DNGRGIP + HP+    S  E+ILT LHAGGKFD+
Sbjct: 62  IDEALAGHCDEIIVTIHEDESVSVSDNGRGIPTDIHPE-EGVSAAEVILTILHAGGKFDD 120

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +LH+ + R   I  Q++  G P  PL    +  +  GT
Sbjct: 121 NSYKVSGGLHGVGVSVVNALSSKLHLIINRAGQIHEQEYHHGDPQYPLRVIGET-DNTGT 179

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            + F P  + F     F+   L +  +  ++L+  V+     ++   E         + +
Sbjct: 180 IVRFWPSAETFSQTI-FNVEILARRLRELSFLNAGVRIVLRDERINLE-------HVYDY 231

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GGL  +++   E ++ ++           G     VE A+ W +     +  + N I  
Sbjct: 232 EGGLSEFVKYINEGKNHLNEIFHFTADADNGI---AVEVALQWNDSYQENVRCFTNNIPQ 288

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTRG+ +Y E      K  +++  DD       I+SV + +P+F+ Q
Sbjct: 289 KDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQ 348

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441
           TK KLVS + +  VE A+   F  YL++NP  A  +   +I+ +  R   RK      RK
Sbjct: 349 TKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRK 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           +A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  
Sbjct: 409 SALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +K+ ++Q++  L+ ALGC   R +Y  + LRY K+IIMTDADVDG+HI +LLLTFF+
Sbjct: 469 ARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFF 528

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++M +L+E+ H+++  PPL+++ +G +  Y  D +  +  L
Sbjct: 529 RQMPELVERGHIYIAQPPLYKLKKGKQEQYIKDNDALETYL 569



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 17/126 (13%)

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           +  ++LIE    +L         +G + +   +     ++ +   +  +  + I R+KGL
Sbjct: 714 KSWFNLIEDG-AYL--------QKGDRRIQVAN---FHQVWQHILQDSRRGMMIQRYKGL 761

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GEM A QL ET MD   R +L+V I+  +    +     + LMG   + R  FI+E A  
Sbjct: 762 GEMNAEQLWETTMDPENRNMLQVTIDDAI----EADRMFSCLMGDDVEPRRAFIEENALN 817

Query: 681 IDDVGT 686
            D +  
Sbjct: 818 AD-IDA 822


>gi|167585848|ref|ZP_02378236.1| DNA topoisomerase IV subunit B [Burkholderia ubonensis Bu]
          Length = 660

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 241/673 (35%), Positives = 359/673 (53%), Gaps = 41/673 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +  S  Y  +SI++L+GLEPV+ RPGMY   T  +   H+  EVIDNA DE + GY 
Sbjct: 1   MSTKKPSAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYG 57

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151
             I V+L  +  ++V D+GRGIP   HP+      +EI+ T LHAGGKFD      Y  S
Sbjct: 58  KQITVTLHADHSVSVEDDGRGIPFGLHPE-EGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK--EKVRNKRGTRITF 209
           GGLHGVG+SV NAL+  L VTV R   I    F+ G  + PL  +   +   K GTR+  
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKIAELGFAEGDVVKPLSTQAAGRGEKKSGTRVQV 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P+PK F          L ++ +SKA L   V+     +K         E++ + +  GL
Sbjct: 177 WPNPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVVLVNEK-------TGERQAWKYEDGL 228

Query: 270 KTYLQTKLENRSLISSEI------FTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTI 322
           + YL  ++    L+           +   +          W +AW EE      SY N I
Sbjct: 229 RGYLLDEMNGSELLIPLFEGERFADSRSGDDTFAEGEGASWVVAWSEEGSLVRESYVNLI 288

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAG 381
            T  GGTHESGLR  L + +K + EL     + + ++++D+      +LS  + +P+F G
Sbjct: 289 PTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQG 348

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           Q K +L S DA + V +  R   + +L Q+     KL E VI++++ R R  ++ E  + 
Sbjct: 349 QIKERLNSRDAVKLVSSFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKVEKRKS 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +  L  PGKL DC        ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN   
Sbjct: 409 SGVAVL--PGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWE 466

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLLTF 558
              +++  N ++ D+  A+G    S        +LRY K+ I++DADVDG+HI  LLLT 
Sbjct: 467 TERDRLFANNEVHDISVAIGVDPHSPDDGVDLSNLRYGKICILSDADVDGSHIQVLLLTL 526

Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KG 610
           F++    LIE+ ++F+  PPLFR+    +G K    +YA DE   + IL++ +K G    
Sbjct: 527 FFKHFPQLIERGNVFVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDGVRDT 586

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669
           +  ISRFKGLGEM A QL +T M+ + R L+ V++       + T   +  LMG  +A  
Sbjct: 587 QWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKL--GELDYESTVARMTMLMGKGEAAA 644

Query: 670 RFKFIQERASFID 682
           R  +++E+ + ++
Sbjct: 645 RRGWLEEKGNEVE 657


>gi|134296546|ref|YP_001120281.1| DNA topoisomerase IV subunit B [Burkholderia vietnamiensis G4]
 gi|134139703|gb|ABO55446.1| DNA topoisomerase IV subunit B [Burkholderia vietnamiensis G4]
          Length = 660

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 242/673 (35%), Positives = 360/673 (53%), Gaps = 41/673 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +  S  Y  +SI++L+GLEPV+ RPGMY   T  +   H+  EVIDNA DE + GY 
Sbjct: 1   MSTKKPSAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYG 57

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151
             I V+L  +  ++V D+GRGIP   HP+      +EI+ T LHAGGKFD      Y  S
Sbjct: 58  KQITVTLHADQSVSVEDDGRGIPFGMHPE-ERVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK--EKVRNKRGTRITF 209
           GGLHGVG+SV NAL+  L VTV R+  I S  F+ G  + PL  +   +   K GTR+  
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWREGKIASLGFADGDVVKPLATQAAGRGEKKSGTRVQV 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P+PK F          L ++ +SKA L   V+     +K         E++ + +  GL
Sbjct: 177 WPNPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVVLVNEK-------TGERQAWKYEDGL 228

Query: 270 KTYLQTKLENRSLISSEI------FTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTI 322
           + YL  ++    L+              T+          W +AW EE      SY N I
Sbjct: 229 RGYLLDEMNGSELLIPLFEGERFADARSTDDTFAEGEGASWVVAWSEEGSLVRESYVNLI 288

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAG 381
            T  GGTHESGLR  L + +K + EL     + + ++++D+      +LS  + +P+F G
Sbjct: 289 PTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQG 348

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           Q K +L S DA + V +  R   + +L Q+     KL E VI++++ R R  ++ E  + 
Sbjct: 349 QIKERLNSRDAVKLVSSFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKVEKRKS 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +  L  PGKL DC        ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN   
Sbjct: 409 SGVAVL--PGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWE 466

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLLTF 558
              +++  N ++ D+  A+G    S        +LRY K+ I++DADVDG+HI  LLLT 
Sbjct: 467 TERDRLFANNEVHDISVAIGVDPHSPDDTVDLSNLRYGKICILSDADVDGSHIQVLLLTL 526

Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KG 610
           F++    LIE+ H+++  PPLFR+    +G K    +YA DE   +  L++ +K G    
Sbjct: 527 FFKHFPQLIERGHVYVARPPLFRVDAPARGKKPAQKLYALDEGELEATLDKLRKDGVRDT 586

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669
           +  ISRFKGLGEM A QL +T M+ + R L+ V++       + T   +  LMG  +A  
Sbjct: 587 QWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKL--GELDYEATVARMTMLMGKGEAAA 644

Query: 670 RFKFIQERASFID 682
           R  +++E+ + ++
Sbjct: 645 RRGWLEEKGNDVE 657


>gi|226942174|ref|YP_002797247.1| DNA gyrase subunit B [Azotobacter vinelandii DJ]
 gi|226717101|gb|ACO76272.1| DNA gyrase protein, subunit B [Azotobacter vinelandii DJ]
          Length = 806

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 234/570 (41%), Positives = 347/570 (60%), Gaps = 20/570 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S +  YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGY N I
Sbjct: 2   SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCNEI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            +++  +  +TV DNGRGIPV+ H K    S  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  SITIHTDESITVRDNGRGIPVDLH-KEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+EL +T+ R   ++ Q +  G+P +PL       +  GT++ F+P  + F 
Sbjct: 121 GVSVVNALSEELVLTIRRDGKVWEQTYVHGVPQAPLATVGDT-DGTGTQVHFKPSAETFH 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGLK ++    
Sbjct: 180 NIH-FSWDILAKRLRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLKAFVDYLN 231

Query: 278 ENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLR 335
            N++ +S       + E+ G     VE A+ W +  N  I  + N I   +GGTH +G R
Sbjct: 232 TNKNAVSQVFHFNVQREEDGV---GVEVALQWNDGFNENILCFTNNIPQRDGGTHLAGFR 288

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +
Sbjct: 289 SALTRNLNAYIEQEGLAKKHKVTTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVK 348

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGK 452
             VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPGK
Sbjct: 349 TAVEQEMGKYFGDFLLENPNEARAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGK 408

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +     +EL+IVEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++ +
Sbjct: 409 LADCQEKDPALSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMLSSAE 468

Query: 513 IMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +  L+ ALGC   R +Y  E LRY  +IIMTDADVDG+HI +LLLTFF+++M +LIE+ +
Sbjct: 469 VGTLITALGCGIGREEYNIEKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGY 528

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +++  PPL+++ +G +  Y  D+E  ++ +
Sbjct: 529 VYIAQPPLYKVKKGKQEQYIKDDEAMEEYM 558



 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L         +  I R+KGLGEM   QL ET MD + R +L+V I   +     T 
Sbjct: 721 FKETLAWLMAETAKRHSIQRYKGLGEMNPEQLWETTMDPSVRRMLKVTIEDAI----ATD 776

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
              N LMG   + R +FI+  A  + ++ 
Sbjct: 777 QIFNTLMGDAVEPRREFIENNALAVANLD 805


>gi|241662513|ref|YP_002980873.1| DNA topoisomerase IV subunit B [Ralstonia pickettii 12D]
 gi|240864540|gb|ACS62201.1| DNA topoisomerase (ATP-hydrolyzing) [Ralstonia pickettii 12D]
          Length = 661

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 254/673 (37%), Positives = 361/673 (53%), Gaps = 45/673 (6%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           S +  Y  SSI++L+GLEPV+ RPGMY   T      H+  EVIDN+ DE + GY  LI 
Sbjct: 2   SKTSQYSESSIKVLKGLEPVKQRPGMY---TRTDNPLHIVQEVIDNSADEALGGYGKLIA 58

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLH 155
           V+L  +G ++V D+ RGIPV  HP+      +EI+ T LHAGGKFD      Y  SGGLH
Sbjct: 59  VTLHKDGSVSVEDDARGIPVGIHPE-EGVPVVEIVYTRLHAGGKFDKGRGGAYAFSGGLH 117

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--LEKKEKVRNKRGTRITFRPDP 213
           GVG+SV NALS  L VTV R   + +  FS G  + P    K E+   K GTR+   PD 
Sbjct: 118 GVGVSVTNALSKRLEVTVWRDGNVSTLAFSGGDVIEPLTTRKAERGEKKSGTRVRAWPDA 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F  +     A L ++ +SKA L   VK   + +K         E  E+ +  GL+ YL
Sbjct: 178 KYFDSEN-IPQAELQRLLRSKAVLLPGVKVTLTLEK-------TGETLEWQYDQGLRGYL 229

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVE----------WAIAWCEENPE-ITSYCNTI 322
              L   S     I   + E         E          W +AW EE      SY N I
Sbjct: 230 VESLAQGSGAEPVIPLFEGEHFADPDKPGEEGFAFGEGASWVVAWTEEGSPVRESYVNLI 289

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFAG 381
            T  GGTHESGLR  L + +K + E+     + + ++S+D+   A  +LS  + +P+F G
Sbjct: 290 PTPAGGTHESGLREGLFQAVKSFVEMHALLPKGVKLMSEDVFARASFVLSAKVLDPQFQG 349

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           Q K +L S DA R V    R   + +L Q+     KL E VI++++ R R  ++ E  + 
Sbjct: 350 QIKERLNSRDAVRLVSTFSRPALELWLNQHVDHGKKLAELVIKQAQARTRAAQKVEKKKG 409

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +  L  PGKL DC  +     ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN   
Sbjct: 410 SGVAVL--PGKLTDCESDDVTRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTWE 467

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTF 558
              +++  N ++ D+  A+G          D   LRY K+ I++DADVDGAHI  LLLT 
Sbjct: 468 TERDRLFANNEVHDIAVAIGVDPHGPTDTVDLSGLRYGKICILSDADVDGAHIQVLLLTL 527

Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KG 610
           F++    LI++ ++ +  PPL+R+    +G K    +YA D+   + I ++ +K G  +G
Sbjct: 528 FFKHFPQLIDRGNVCVARPPLYRVDAPARGKKPAQKLYALDDGELEAIEDKLRKDGVKEG 587

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669
             +ISRFKGLGEM A QL ET M+ + R LL V + +       T + +N LMG  +A  
Sbjct: 588 AWQISRFKGLGEMSAEQLWETTMNPDTRRLLPVALGELGQD--QTINMMNMLMGKGEAGA 645

Query: 670 RFKFIQERASFID 682
           R  +++ R + ++
Sbjct: 646 RRTWLEARGNEVE 658


>gi|224827188|ref|ZP_03700283.1| DNA gyrase, B subunit [Lutiella nitroferrum 2002]
 gi|224600581|gb|EEG06769.1| DNA gyrase, B subunit [Lutiella nitroferrum 2002]
          Length = 796

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 223/571 (39%), Positives = 341/571 (59%), Gaps = 19/571 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +   Y A SI++L+GL+ VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+A+ I+
Sbjct: 2   SEQEYGADSIKVLKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVLDNAIDEALAGHADTIK 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+++ +  ++V DNGRGIP + HP+   +S  E+I+T LHAGGKFD+++Y+ISGGLHGVG
Sbjct: 62  VTINPDNSISVEDNGRGIPTDIHPE-EGRSAAEVIMTVLHAGGKFDSNSYKISGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALSD L + + R   +   +F RG  ++PL         RGT +TF    + FG 
Sbjct: 121 VSVVNALSDWLRLKIWRDGKVHEMEFRRGEAVAPLTVTGHST-YRGTEVTFHASEETFGK 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V       +         ++E F F GG+  +++    
Sbjct: 180 I-EFHFDILAKRIRELSFLNQGVAITLIDKR-------TGKEENFAFSGGVAGFVEYMNR 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ +  ++F    EK+G    TVE A+ W +     +  + N I   +GG+H + LR  
Sbjct: 232 NKTALHPKVFHAIGEKEG---MTVEVAMQWNDSYQESVQCFTNNIPQRDGGSHLTALRQV 288

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           +TR +  Y E +    K  +    DD+      +LSV + +P+F+ QTK KLVS +    
Sbjct: 289 MTRTLNGYIEQSDTAKKAKVDTSGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPV 348

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLA 454
           V   + D    +L++NP +A  ++  +++ +  R   RK RE+ R+   +  L LPGKLA
Sbjct: 349 VNEVISDALKSFLLENPNDAKIIVGKIVDAARAREAARKAREITRRKGIMDGLGLPGKLA 408

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+  +Q++ 
Sbjct: 409 DCQEKDPAMSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKMLASQEVA 468

Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            L+ ALGC   + +Y  + LRY ++IIMTDADVDGAHI +LLLTFFY++  +L+E+ H++
Sbjct: 469 TLITALGCGIGKDEYNPDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQTPELVERGHIY 528

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           +  PPL++   G +  Y  D+    + L + 
Sbjct: 529 IAQPPLYKAKHGKQERYLKDDYELDQYLLQL 559



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 4/100 (4%)

Query: 586 TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645
            +           + L+      +  + I R+KGLGEM   QL ET MD   R LL+V+I
Sbjct: 700 KRGETVKPVADFGEALDWLLAEVRKGMNIQRYKGLGEMNPEQLWETTMDPTVRRLLKVKI 759

Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              +       D    LMG   + R  FI+  A    ++ 
Sbjct: 760 EDVMG----ADDVFTTLMGDNVEPRRAFIEGNALIARNID 795


>gi|28569045|gb|AAO47226.1|AF205853_2 DNA gyrase subunit B [Streptomyces rishiriensis]
          Length = 702

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 227/702 (32%), Positives = 334/702 (47%), Gaps = 53/702 (7%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86
              P   A +      +Y A  + +L+GLE VR RPGMYIG +D + L H   E+IDN++
Sbjct: 2   STFPAPAAGSRPQDGSDYTARHLMVLDGLEAVRKRPGMYIGSSDSRGLMHCLWEIIDNSV 61

Query: 87  DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146
           DE +AG  + IEV L  +G + V DNGRGIPV+  P+    S +E+  T LHAGGKF   
Sbjct: 62  DEALAGACDHIEVILHDDGSVEVTDNGRGIPVDTEPR-TGLSGVELAYTKLHAGGKFGGG 120

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------- 199
           +Y   G    VG SVVNALS  L + V R     +  F RG P +               
Sbjct: 121 SYGSGGLHG-VGASVVNALSARLDIEVDRHGRTHAISFRRGAPGTYSAPGPDAPFTRAQG 179

Query: 200 --------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
                   +++ GTR+ +  D +IF   A      L +  +  A+L   +      +  +
Sbjct: 180 LHRTARIPKSRTGTRVRYWADRQIFLKDAKLSLENLHQRARQTAFLVPGLTIVVRDEYGL 239

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KK 295
            E     E E F F GG+  + +    ++ +      TG+                   +
Sbjct: 240 GEGGSKGE-ESFRFDGGISEFCEYLAADKPVCDVLRLTGQGTFKETVPVLDEHGQMTPTE 298

Query: 296 GTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA 354
            T    V+ A+ W         S+ N I T +GGTH +G   A+ + + +     +  R 
Sbjct: 299 VTRELGVDVALRWGTGYDTTLRSFVNIIATPKGGTHVAGFEQAVAKTMNEVLRAKKLLRV 358

Query: 355 ISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
                  DD +     +++V + EP+F GQTK  L +  A+R V   +      +L    
Sbjct: 359 AEDDIVKDDALEGLTAVVTVRLAEPQFEGQTKEVLGTSAARRIVNTVISRELKAFLTSTK 418

Query: 413 IEATKLLEWVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
            +A      V+E+           R+ +    RKTA+    LP KLADC  +    +ELF
Sbjct: 419 RDAAAQARVVMEKAVAAARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDDVERSELF 478

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           IVEGDSA G+AK ARN   QA+LP+RGKILNV  +    +  N +   ++Q +G  +   
Sbjct: 479 IVEGDSALGTAKLARNSEFQALLPIRGKILNVQKSSVTDMLKNAECGAIIQVIGAGSGRT 538

Query: 528 YREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI----- 582
           +  +  RY K+I+MTDADVDG+HI +LLLT F++ M  ++E   +F   PPL RI     
Sbjct: 539 FDIDAARYGKIIMMTDADVDGSHIRTLLLTLFHRYMRPMVESGRVFAAVPPLHRIELVQP 598

Query: 583 TQGTKSV-YAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
            +G     Y + +   +  L EF+  G + K  I R+KGLGEM A QL ET MD   RTL
Sbjct: 599 KKGQDRYVYTYSDRELRDRLMEFQSKGVRYKDSIQRYKGLGEMDADQLAETTMDPRHRTL 658

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            R+ ++     L+  +   + LMG     R +FI   A+ +D
Sbjct: 659 RRINLSD----LEAAEQVFDLLMGNDVAPRKEFISSSAATLD 696


>gi|88812692|ref|ZP_01127939.1| DNA topoisomerase IV, B subunit [Nitrococcus mobilis Nb-231]
 gi|88790108|gb|EAR21228.1| DNA topoisomerase IV, B subunit [Nitrococcus mobilis Nb-231]
          Length = 630

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 250/629 (39%), Positives = 352/629 (55%), Gaps = 27/629 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +Y+A+SI +L GL+PVR RPGMY   TD    +HL  EVIDN +DE +AG+A+ IEV 
Sbjct: 2   TKHYNAASIEVLTGLDPVRRRPGMY---TDTTRPNHLAREVIDNGVDEALAGFADRIEVV 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +G L+V DNGRG+PV+ HP+      +E+IL+ LHAGGKF   +Y+ SGGLHGVG+S
Sbjct: 59  LHYDGSLSVSDNGRGMPVDLHPE-EGLPGVELILSRLHAGGKFSQHSYQFSGGLHGVGVS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDK 219
           VVNALS  L VT+ R    +   F  G   S LE    +   + GT + F PD   + D 
Sbjct: 118 VVNALSRRLEVTIRRDGQQWRMHFVEGEKCSELELIGALNKVETGTTLRFWPDA-RYFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F   RL    ++KA L   ++  +  +    E         +Y+  GL  YL   L  
Sbjct: 177 PRFSVPRLQYALRAKAVLCPGLRVRFYDEAAQEE-------FVWYYEDGLADYLCDTLGP 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +    F G+       + T EWA+ W  +  E    SY N I T +GGTH +GLR  
Sbjct: 230 VERLPEPPFLGQMSA---AQETAEWALVWLPDAGEAVQESYVNLIPTPQGGTHVNGLRAG 286

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           LT  I+++ E      R + I  DD+      ILSV +  P+F GQTK +L S +    V
Sbjct: 287 LTEAIREFCEFRNLLPRGVRIAPDDVWERLSFILSVKLENPQFTGQTKERLSSRECAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L Q+   A +++  +I+ ++ RLR    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDTFSLWLNQHIAPAQQIVALIIQNAQRRLR--TSKKVARKRVTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +      TELF+VEGDSAGGSAKQAR+R  QAV+PLRGKILN       ++  +Q++ D+
Sbjct: 405 TSQDLRQTELFLVEGDSAGGSAKQARSREYQAVMPLRGKILNTWEVDPAEVMGSQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             ALG    S      LRY K+ I+ DAD DGAHIA+LL   F +    L+ Q H+++  
Sbjct: 465 AVALGVEPGSADL-SRLRYGKICILADADPDGAHIATLLCALFLRHFPALVRQGHVYVAM 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
           PPL+RI  G ++ YA D E ++ +L+    ++ K K +I+RFKGLGEM   QL+ET M A
Sbjct: 524 PPLYRIDVGKQTYYALDGEERRGVLDRVAAENNKAKPQITRFKGLGEMNPKQLRETTMAA 583

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMG 664
             R L+R+ ++    S    +  +  L+G
Sbjct: 584 ETRRLVRLTVD----SEDAAEQLLGMLLG 608


>gi|52426304|ref|YP_089441.1| DNA gyrase subunit B [Mannheimia succiniciproducens MBEL55E]
 gi|52308356|gb|AAU38856.1| GyrB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 811

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 232/575 (40%), Positives = 355/575 (61%), Gaps = 24/575 (4%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           +++  +NY ASSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY  
Sbjct: 2   SENTQENYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCK 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V D+GRGIPV+ HP+    S  ++I+T LHAGGKFD+++Y++SGGLH
Sbjct: 62  DIIVTIHEDNSVSVQDDGRGIPVDIHPE-EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD+L +T+ RQ  ++ Q +S G P   L+   +  +K GT + F P P I
Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGHVYEQFYSLGEPNEQLKNIGET-DKTGTTVRFWPSPTI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   F+   L K  +  ++L+  V      +++ A        + F++ GG++ +++ 
Sbjct: 180 FSNTV-FEYEILKKRLRELSFLNSGVSIKLFDERDGAN-------DHFHYEGGIQAFVEY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             +N++ I  + F    EK+G     VE A+ W +     I  + N I   +GGTH +G 
Sbjct: 232 LNQNKTTIHPKPFYFSIEKEGI---GVEVALQWNDGYNENIYCFTNNIPQRDGGTHLAGF 288

Query: 335 RVALTRGIKKYAELTQNKRA-------ISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           R ALTR +  Y +     +        +    DD     V ++SV + +P+F+ QTK KL
Sbjct: 289 RGALTRTLNSYMDKAGLNKKGKNDKDKVETSGDDAREGLVAVISVKVPDPKFSSQTKDKL 348

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRK 446
           VS + +  VE+A+ +    YL +NP +A  +   +++ +  R   RK R    RK A+  
Sbjct: 349 VSSEVKGAVESAMNERLQEYLEENPNDAKIIATKIVDAARAREAARKAREMTRRKGALDI 408

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 409 AGLPGKLADCQERDPAFSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 468

Query: 507 IRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           + ++Q++  L+ ALGC   R +Y  + +RY KVIIMTDADVDG+HI +LLLTFFY++M +
Sbjct: 469 MLSSQEVGTLITALGCGIGRDEYNPDKMRYHKVIIMTDADVDGSHIRTLLLTFFYRQMPE 528

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKI 600
           +IE+ ++++  PPL+++ +G +  Y  DE    + 
Sbjct: 529 IIERGYVYIAQPPLYKVKKGKQEQYIKDEPAMTQY 563



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 8/104 (7%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           +T+G   +        ++ +E F K  +  + + R+KGLGEM   QL ET MD + R +L
Sbjct: 715 VTRGNGKLEISS---FEQAIEWFVKESRKGLTVQRYKGLGEMNPEQLWETTMDPDARHML 771

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R  FI+  A    ++ 
Sbjct: 772 KVTIKDAV----AADQLFTTLMGDEVEPRRDFIESNALRA-NLD 810


>gi|146337179|ref|YP_001202227.1| DNA gyrase subunit B [Bradyrhizobium sp. ORS278]
 gi|146189985|emb|CAL73977.1| DNA gyrase subunit B [Bradyrhizobium sp. ORS278]
          Length = 812

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 241/579 (41%), Positives = 345/579 (59%), Gaps = 13/579 (2%)

Query: 26  SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDN 84
           +     + A    + ++ Y A SIR+L+GL+ VR RPGMYIG TD+   LHH+  EV+DN
Sbjct: 2   TEPARQTIADNEPATANEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDN 61

Query: 85  AMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144
           A+DE +AGYA  +EV L+ +  +TV D+GRGIPV  H K    S  E+I+T LHAGGKFD
Sbjct: 62  AIDEALAGYATRVEVVLNADNSVTVRDDGRGIPVGIH-KDEGVSAAEVIMTQLHAGGKFD 120

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS +L + + R++     +F+ G  ++PL    + + KRG
Sbjct: 121 QNSYKVSGGLHGVGVSVVNALSSKLELRIWREDKEHLIEFAHGDAVAPLRVVGESKGKRG 180

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF    + F     +D A L    +  A+L+  V    S  +   EK      EE +
Sbjct: 181 TEVTFLASTETFK-MVEYDYATLEHRLRELAFLNSGVHIILSDMRHAVEKR-----EEMF 234

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG++ +++    N+  I       ++E  G    TVE A+ W +   E    + N I 
Sbjct: 235 YSGGVEEFVKYLDRNKKAIVPNPIMVRSEANGI---TVEAALWWNDSYHENVLCFTNNIP 291

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
             +GGTH +G R ALTR +  YAE    K  I++  DD       +LSV + +P+F+ QT
Sbjct: 292 QRDGGTHLAGFRGALTRQVNGYAEANAKKEKIALTGDDCREGLTAVLSVKVPDPKFSSQT 351

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443
           K KLVS + +  VEN + +    +  ++P EA  ++  VI+ +  R   RK RE+ RK  
Sbjct: 352 KDKLVSSEVRPVVENVINEALSAWFEEHPSEAKTVVGKVIQAAAAREAARKARELTRKNP 411

Query: 444 IR-KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           +     LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR  QAVLPLRGKILNV   
Sbjct: 412 LNNIASLPGKLADCQEKDPAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERV 471

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
             +K+ +++QI  L+ ALG      +  + LRY K+I+MTDADVDGAHI +LLLTFFY++
Sbjct: 472 RPDKMLSSEQIGTLITALGTGISDDFSIDKLRYHKIIVMTDADVDGAHIRTLLLTFFYRQ 531

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           M  +I++ HL++  PPL+++T+G    Y  DE   +  L
Sbjct: 532 MRQIIDRGHLYIAQPPLYKVTRGKSEQYLKDERALEDYL 570



 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 5/87 (5%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            + E     G+  I + R+KGLGEM   QL ET +D   RTLL+V++      + +  D 
Sbjct: 730 DLFEAVTDSGRKGIAMQRYKGLGEMNPQQLWETTLDTEARTLLQVKV----KEVDEADDI 785

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R +FIQ+ +    +V 
Sbjct: 786 FTKLMGDVVEPRREFIQDNSLSA-NVD 811


>gi|148251634|ref|YP_001236219.1| DNA gyrase subunit B [Bradyrhizobium sp. BTAi1]
 gi|146403807|gb|ABQ32313.1| DNA gyrase subunit B [Bradyrhizobium sp. BTAi1]
          Length = 812

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 239/579 (41%), Positives = 349/579 (60%), Gaps = 13/579 (2%)

Query: 26  SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDN 84
           +     + A    + +++Y A SIR+L+GL+ VR RPGMYIG TD+   LHH+  EV+DN
Sbjct: 2   TEPARQTIADNEPATANDYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDN 61

Query: 85  AMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144
           A+DE +AGYA+ +EV L+ +  +TV D+GRGIPV+ H K    S  E+I+T LHAGGKFD
Sbjct: 62  AIDEALAGYASRVEVVLNADNSVTVRDDGRGIPVDIH-KGEGVSAAEVIMTQLHAGGKFD 120

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS +L + + R++     +F+ G  ++PL+   + + +RG
Sbjct: 121 QNSYKVSGGLHGVGVSVVNALSSKLQLRIWREDKEHLIEFAHGDAVAPLKVVGEAQGRRG 180

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF    + F     +D A L    +  A+L+  V    S  +   EK      EE +
Sbjct: 181 TEVTFLASTETFK-MVEYDYATLEHRLRELAFLNSGVHIVLSDMRHAVEKR-----EEMF 234

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG++ +++    N+  I       ++E  G    TVE A+ W +   E    + N I 
Sbjct: 235 YSGGVEEFVRYLDRNKKAIVPSPIMVRSEVNGI---TVEAALWWNDSYHENVLCFTNNIP 291

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
             +GGTH +G R ALTR +  YA+    K  I++  DD       +LSV + +P+F+ QT
Sbjct: 292 QRDGGTHLAGFRGALTRQVNGYADAHAKKEKIALTGDDCREGLTAVLSVKVPDPKFSSQT 351

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443
           K KLVS + +  VEN + +    +  ++P EA  ++  VI+ +  R   RK RE+ RK  
Sbjct: 352 KDKLVSSEVRPVVENVINEALSAWFEEHPSEAKTVVGKVIQAAAAREAARKARELTRKNP 411

Query: 444 IR-KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           +     LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR  QAVLPLRGKILNV   
Sbjct: 412 LNNIASLPGKLADCQEKDPAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERV 471

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
             +K+ +++QI  L+ ALG      +  + LRY K+I+MTDADVDGAHI +LLLTFFY++
Sbjct: 472 RPDKMLSSEQIGTLITALGTGISDDFSIDKLRYHKIIVMTDADVDGAHIRTLLLTFFYRQ 531

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           M  +I++ HL++  PPL+++T+G    Y  DE   +  L
Sbjct: 532 MRQIIDRGHLYIAQPPLYKVTRGKSEQYLKDERALEDYL 570



 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 5/87 (5%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            + E     G+  I + R+KGLGEM   QL ET +D   RTLL+V++      + +  D 
Sbjct: 730 DLFEAVTDAGRKGIAMQRYKGLGEMNPQQLWETTLDTEARTLLQVKV----KEVDEADDI 785

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R +FIQ+ +    +V 
Sbjct: 786 FTKLMGDVVEPRREFIQDNSLSA-NVD 811


>gi|329118645|ref|ZP_08247349.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327465380|gb|EGF11661.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 796

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 226/571 (39%), Positives = 333/571 (58%), Gaps = 19/571 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95
            +   + Y A SI++LEGLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   AEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V DNGRG+P   HPK    S  E+I+T LHAGGKFDN++Y+ISGGLH
Sbjct: 62  KINVTIHADNSVSVSDNGRGMPTGIHPK-EGISAAEVIMTILHAGGKFDNNSYKISGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD + +T+ R       +F RG    PL       +K+GT + F    + 
Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFIRGASEKPLAVVGD-SDKKGTTVRFLASEET 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           FG+   +    L K  +  ++L+  V    + +++        + E F   GG+  ++Q 
Sbjct: 180 FGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
               ++ +  +IF    EK G    +VE A+ W +     +  + N I   +GGTH + L
Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R  +TR I  Y E  +   K  +    DD+      +LSV + +P+F+ QTK KLVS + 
Sbjct: 289 RQVMTRTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEI 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
              V   +      +L +NP EA  +   +++ +  R   RK RE+ R+   +  L LPG
Sbjct: 349 GPVVNEVINRALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  EK+  +Q
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALG    + ++  E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ 
Sbjct: 469 EVATLITALGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++++  PPL++   G +  Y  DE  K + L
Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDEFEKDQWL 559



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 7/106 (6%)

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           ++ +G      +D    +  LE   +  +  + I R+KGLGEM   QL ET MD   R L
Sbjct: 698 KLYKGDNE---YDISSFEDALEILLQTAQKGMAIQRYKGLGEMNPEQLWETTMDPAVRRL 754

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           L+V I   +       +    LMG + + R  FI+  A    ++  
Sbjct: 755 LKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796


>gi|325265831|ref|ZP_08132517.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Kingella denitrificans
           ATCC 33394]
 gi|324982469|gb|EGC18095.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Kingella denitrificans
           ATCC 33394]
          Length = 661

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 246/671 (36%), Positives = 353/671 (52%), Gaps = 36/671 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
             +  Y  SSI++L+GL+PV+ RPGMY   T   +  H+  EVIDNA DE + G+A  I+
Sbjct: 2   KPAAAYSESSIQVLKGLDPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATRID 58

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST----YEISGGL 154
           V +  +G L+V DNGRGIP   HP       +E++ T LHAGGKFD  +    Y  SGGL
Sbjct: 59  VEIHADGSLSVRDNGRGIPTGLHP-VEQIPVVELVFTQLHAGGKFDKKSGGGAYAFSGGL 117

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213
           HGVG+SV NALS  L VTV R   +    F+ G  + PL +  K      GT +   P+P
Sbjct: 118 HGVGVSVTNALSSRLEVTVKRDGQVSRIVFADGYVVEPLAQIGKCAVRDTGTEVRVYPNP 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     +    L ++ ++KA L   V    +  + +  +   P  + +++P GL++YL
Sbjct: 178 KYFES-PTYSIPELERLLRAKAVLLQGVTVSLT--RHVKGQPAHPVTQTWHYPQGLQSYL 234

Query: 274 QTKLENRSLISS----EIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGG 328
              LEN          E +   +           +A+ W EE      SY N I T  GG
Sbjct: 235 ADLLENAQEAVPVFAAENYISGSHDDFRAGEGAAFALTWLEEGSCANESYVNLIPTPLGG 294

Query: 329 THESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           THE+GL+ A    +  +        R + I SDD+   A  +LS  + +P+F GQTK KL
Sbjct: 295 THEAGLKQAAFNAVNNFIAHHNLLPRGVKINSDDVFSRAAFVLSARVLDPQFQGQTKDKL 354

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL 447
            + DA + V     DP + +L QN     K+ +  I++++ R+R    +++ +K      
Sbjct: 355 TNRDALKLVSAVCSDPLELWLNQNTEIGKKIADLAIKQAQARMRSV--KKIEKKKGSGVA 412

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKL DC        ELF+VEGDSAGGSAK AR++S QA+LPLRGK+LN      +++
Sbjct: 413 VLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKSYQAILPLRGKVLNSFEVHRDQL 472

Query: 508 RNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
             N +I D+  A+G        + D   LRY K+ I++DADVDG+HI  LLLT FY+   
Sbjct: 473 FGNAEIHDISVAIGVDPHGANDDVDLGGLRYGKIAILSDADVDGSHIQVLLLTLFYRHFP 532

Query: 565 DLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHG--KGKIEIS 615
            L+   H+++  PPLFR+    QG     +  YA DE     ILE  K+    +    IS
Sbjct: 533 KLVANGHIYVAQPPLFRVDVNAQGKSKPARKFYALDEAELNAILERLKQENVRETAYSIS 592

Query: 616 RFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFI 674
           RFKGLGEM   QLK+T +  + R LL+V I + +    DT++   KLMG  +A  R  ++
Sbjct: 593 RFKGLGEMNPDQLKDTTLYPDTRRLLQVRIPEHM--AGDTENVFLKLMGKGEAAARRAWM 650

Query: 675 QERASFIDDVG 685
           +      D + 
Sbjct: 651 EAEGDKAD-LD 660


>gi|295675917|ref|YP_003604441.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia sp. CCGE1002]
 gi|295435760|gb|ADG14930.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia sp. CCGE1002]
          Length = 661

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 242/674 (35%), Positives = 357/674 (52%), Gaps = 42/674 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +  +  Y  +SI++L+GLEPV+ RPGMY   T  +   H+  EVIDNA DE + GY 
Sbjct: 1   MSTKKPNAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYG 57

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151
             I V+L  +  ++V D+GRGIP   HP       +EI+ T LHAGGKFD      Y  S
Sbjct: 58  RQITVTLHADHSVSVDDDGRGIPFGLHP-DEGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK--EKVRNKRGTRITF 209
           GGLHGVG+SV NALS  L VTV R   +    F+ G    PL+ +   K   K GTR+T 
Sbjct: 117 GGLHGVGVSVTNALSTRLDVTVWRDGKVAELSFAHGDVAKPLQVRAATKADKKSGTRVTA 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
             DPK F          L ++ +SKA L   V+     +K         E++ + +  GL
Sbjct: 177 WADPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVTLVNEK-------TGEQQSWKYEDGL 228

Query: 270 KTYLQTKLENRSLISSEIF-------TGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNT 321
           + YL   +    L+            +  +E+         W +AW EE P    SY N 
Sbjct: 229 RGYLLEGMNGSDLLIPLFEGERYAESSRSSEETFAEGEGAAWVVAWSEEGPLTRESYVNL 288

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFA 380
           I T  GGTHESGLR  L + +K + EL     + + ++++D+      +LS  + +P+F 
Sbjct: 289 IPTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQ 348

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQ K +L S DA + V +  R   + +L Q+     KL + VI++++ R R  ++ E  +
Sbjct: 349 GQIKERLNSRDAVKLVSSFARPALELWLNQHVEHGKKLADLVIKQAQARTRAGQKVEKRK 408

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
            + +  L  PGKL DC        ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN  
Sbjct: 409 SSGVAVL--PGKLTDCESTEIGRNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTW 466

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLLT 557
               +++  N ++ D+  A+G    +   +    +LRY K+ I++DADVDG+HI  LLLT
Sbjct: 467 ETERDRLFANNEVHDISVAIGVDPHNPDDKVDLSNLRYGKICILSDADVDGSHIQVLLLT 526

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--K 609
            F++    LIE+ H+ +  PPLFR+    +G K    +YA DE   + IL++ +K G   
Sbjct: 527 LFFKHFPQLIERGHVCVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDGVRD 586

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KAD 668
            +  ISRFKGLGEM A QL +T M+ + R L  V + K           +  LMG  +A 
Sbjct: 587 NQWSISRFKGLGEMSAEQLWDTTMNPDTRRLQPVALGKLDYDATVA--RMTMLMGKGEAA 644

Query: 669 ERFKFIQERASFID 682
            R  +++E+ + ++
Sbjct: 645 SRRSWLEEKGNEVE 658


>gi|300704691|ref|YP_003746294.1| DNA topoisomerase iv subunit B [Ralstonia solanacearum CFBP2957]
 gi|299072355|emb|CBJ43693.1| DNA topoisomerase IV, subunit B [Ralstonia solanacearum CFBP2957]
          Length = 661

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 252/673 (37%), Positives = 356/673 (52%), Gaps = 45/673 (6%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           S +  Y  +SI++L+GLEPV+ RPGMY   T      H+  EVIDNA DE + G+  LI 
Sbjct: 2   SKTPQYSEASIKVLKGLEPVKQRPGMY---TRTDNPLHIVQEVIDNAADEALGGFGKLIA 58

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLH 155
           V+L  +G ++V D  RGIPV  HP+      +EI+ T LHAGGKFD      Y  SGGLH
Sbjct: 59  VTLHKDGSVSVEDEARGIPVGIHPE-EGVPVVEIVFTRLHAGGKFDKGRGGAYAFSGGLH 117

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--LEKKEKVRNKRGTRITFRPDP 213
           GVG+SV NALS  L VTV R   + +  FS G  +      K E+   K GTR+   PD 
Sbjct: 118 GVGVSVTNALSTRLEVTVWRDGNVSTLTFSGGDVIEQLTTRKAERGEKKNGTRVRVWPDA 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F  +     A L ++ +SKA L   VK   + +K         E  E+ +  GL+ YL
Sbjct: 178 KYFDSEN-IPQAELQRLLRSKAVLLPGVKVALTLEKS-------GETVEWQYDQGLRGYL 229

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVE----------WAIAWCEENPE-ITSYCNTI 322
              L   S     I   + E         E          W +AW EE      SY N I
Sbjct: 230 IESLAQGSGAEPVIPLFEGEHFADPDKPGEEGFAFGEGASWVVAWTEEGSPVRESYVNLI 289

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFAG 381
            T  GGTHESGLR  L + +K + E+     + + ++ +D+   A  +LS  + +P+F G
Sbjct: 290 PTPAGGTHESGLREGLFQAVKSFVEMHALLPKGVKLMPEDVFARASFVLSAKVLDPQFQG 349

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           Q K +L S DA R V    R   + +L Q+     KL E VI +++ R R  ++ E  + 
Sbjct: 350 QIKERLNSRDAVRLVSTFSRPALELWLNQHVEHGKKLAELVIRQAQARTRAAQKVEKKKG 409

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +  L  PGKL DC  +     ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN   
Sbjct: 410 SGVAVL--PGKLTDCESDDVSRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTWE 467

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTF 558
              +++  N ++ D+  A+G          D   LRY K+ I++DADVDGAHI  LLLT 
Sbjct: 468 TERDRLFANNEVHDIAVAIGVDPHGPTDSVDLSGLRYGKICILSDADVDGAHIQVLLLTL 527

Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHGKG-- 610
           F++    LIE+ ++ +  PPL+R+    +G K    +YA D+   + I ++ +K G    
Sbjct: 528 FFKHFPQLIERGNVCVARPPLYRVDAPARGKKPAQKLYALDDGELEAIEDKLRKDGLKED 587

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669
             +ISRFKGLGEM A QL ET M+ + R LL V I +     + T + +N LMG  +A  
Sbjct: 588 SWQISRFKGLGEMSAEQLWETTMNPDTRRLLPVFIGEPG--PEQTVNMMNMLMGKGEAGA 645

Query: 670 RFKFIQERASFID 682
           R  +++ R + ++
Sbjct: 646 RRTWLEARGNEVE 658


>gi|299768254|ref|YP_003730280.1| DNA gyrase, B subunit [Acinetobacter sp. DR1]
 gi|298698342|gb|ADI88907.1| DNA gyrase, B subunit [Acinetobacter sp. DR1]
          Length = 822

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 228/581 (39%), Positives = 344/581 (59%), Gaps = 19/581 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85
                S +   Q+    YD+SSI++L GL+ VR RPGMYIG TD+   LHH+  EV+DNA
Sbjct: 2   SSESQSASQTEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNA 61

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AG+ + I V++  +  ++V DNGRGIP + HP+    S  E+ILT LHAGGKFD+
Sbjct: 62  IDEALAGHCDEIIVTIHEDESVSVSDNGRGIPTDIHPE-EGVSAAEVILTILHAGGKFDD 120

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +LH+ ++R   +  Q++  G P  PL    +  +K GT
Sbjct: 121 NSYKVSGGLHGVGVSVVNALSRKLHLMISRAGQVHEQEYQHGDPQYPLRVIGET-DKSGT 179

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            + F P  + F     F+   L +  +  ++L+  V+     ++   E         + +
Sbjct: 180 TVRFWPSAETFSQTI-FNVEILARRLRELSFLNAGVRIVLRDERINLE-------HVYDY 231

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GGL  +++   E ++ ++           G     VE A+ W E     +  + N I  
Sbjct: 232 EGGLSEFVKYINEGKTHLNEIFHFTADTDNGI---VVEVALQWNESYQENVRCFTNNIPQ 288

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTRG+ +Y E      K  +++  DD       I+SV + +P+F+ Q
Sbjct: 289 KDGGTHLAGFRAALTRGLNQYLENENIIKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQ 348

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441
           TK KLVS + +  VE A+   F  YL++NP  A  +   +I+ +  R   RK      RK
Sbjct: 349 TKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRK 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           +A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  
Sbjct: 409 SALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +K+ ++Q++  L+ ALGC   R +Y  + LRY K+IIMTDADVDG+HI +LLLTFF+
Sbjct: 469 ARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFF 528

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++M +L+E+ H+++  PPL+++ +G +  Y  D +  +  L
Sbjct: 529 RQMPELVERGHIYIAQPPLYKLKKGKQEQYIKDNDALETYL 569



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 17/126 (13%)

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           +  + L+E    +L         +G + +      +  ++ +   +  +  + I R+KGL
Sbjct: 714 KSWFSLLEDG-AYL--------QKGDRRIQV---ANFHQVWQHILQDSRRGMMIQRYKGL 761

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GEM A QL ET MD   R +L+V I+  +    +     + LMG   + R  FI+E A  
Sbjct: 762 GEMNAEQLWETTMDPENRNMLQVTIDDAI----EADRMFSCLMGDDVEPRRAFIEENALN 817

Query: 681 IDDVGT 686
            D +  
Sbjct: 818 AD-IDA 822


>gi|91782490|ref|YP_557696.1| DNA topoisomerase IV subunit B [Burkholderia xenovorans LB400]
 gi|91686444|gb|ABE29644.1| DNA topoisomerase IV subunit B [Burkholderia xenovorans LB400]
          Length = 661

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 238/674 (35%), Positives = 357/674 (52%), Gaps = 42/674 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +  +  Y  +SI++L+GLEPV+ RPGMY   T  +   H+  EVIDNA DE + G+ 
Sbjct: 1   MSTKKPNAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGHG 57

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151
             I V+L  +  ++V D+GRGIP   HP+      +EI+ T LHAGGKFD      Y  S
Sbjct: 58  RQITVTLHVDHSVSVEDDGRGIPFGLHPE-EGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITF 209
           GGLHGVG+SV NALS  L VTV R+  +    F+ G     LE +   +   K GTR+T 
Sbjct: 117 GGLHGVGVSVTNALSTRLDVTVWREGKVAELSFANGDVARELEVRPATKGDKKSGTRVTA 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
             +PK F          L ++ +SKA L   V+     +K         E++ + +  GL
Sbjct: 177 WANPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVTLINEK-------TGEQQSWKYEDGL 228

Query: 270 KTYLQTKLENRSLISSEIFTGKT-------EKKGTHRGTVEWAIAWCEENPEI-TSYCNT 321
           + YL   +    L+       +        E+         W +AW EE   +  SY N 
Sbjct: 229 RGYLLEGMNGSDLLIPLFEGERYVENSRASEETFAEGEGASWVVAWSEEGTLMRESYVNL 288

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFA 380
           I T  GGTHESGLR  L + +K + EL     + + ++++D+      +LS  + +P+F 
Sbjct: 289 IPTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQ 348

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQ K +L S DA + V +  R   + +L Q+     KL + VI++++ R R  ++ E  +
Sbjct: 349 GQIKERLNSRDAVKLVSSFARPALELWLNQHVEHGKKLADLVIKQAQARTRAGQKVEKRK 408

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
            + +  L  PGKL DC        ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN  
Sbjct: 409 SSGVAVL--PGKLTDCESTEIGRNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTW 466

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLLT 557
               +++  N ++ D+  A+G    S   +    +LRY K+ I++DADVDG+HI  LLLT
Sbjct: 467 ETERDRLFANNEVHDISVAIGVDPHSPDDKVDLSNLRYGKICILSDADVDGSHIQVLLLT 526

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--K 609
            F++    LIE+ H+ +  PPLFR+    +G K    +YA DE   + IL++ +K G   
Sbjct: 527 LFFKHFPQLIERGHVCVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDGVRD 586

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KAD 668
            +  ISRFKGLGEM A QL +T M+ + R L  V + +           +  LMG  +A 
Sbjct: 587 TQWSISRFKGLGEMSAEQLWDTTMNPDTRRLTPVALGELDYDATVA--RMTMLMGKGEAA 644

Query: 669 ERFKFIQERASFID 682
            R  +++E+ + ++
Sbjct: 645 SRRSWLEEKGNEVE 658


>gi|296315053|ref|ZP_06864994.1| DNA gyrase, B subunit [Neisseria polysaccharea ATCC 43768]
 gi|296838081|gb|EFH22019.1| DNA gyrase, B subunit [Neisseria polysaccharea ATCC 43768]
          Length = 796

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 229/601 (38%), Positives = 343/601 (57%), Gaps = 24/601 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95
            +   + Y A SI++LEGLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V DNGRG+P   HPK   +S  E+I+T LHAGGKFDN++Y+ISGGLH
Sbjct: 62  KITVTIHADNSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD + +T+ R       +F RG    PL+      +K+GT + F    + 
Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGD-SDKKGTTVRFLASTET 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           FG+   +    L K  +  ++L+  V    + +++        + E F   GG+  ++Q 
Sbjct: 180 FGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
               ++ +  +IF    EK G    +VE A+ W +     +  + N I   +GGTH + L
Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R  +TR I  Y E  +   K  +    DD+      +LSV + +P+F+ QTK KLVS + 
Sbjct: 289 RQVMTRTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEI 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
              V   +      +L +NP EA  +   +++ +  R   RK RE+ R+   +  L LPG
Sbjct: 349 GPVVNEVISQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  EK+  +Q
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALG    + ++  E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ 
Sbjct: 469 EVATLITALGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPL++   G +  Y  DE  K + L          +   R      +  ++L +
Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVSDGR-----TIEGAELAD 583

Query: 631 T 631
           T
Sbjct: 584 T 584



 Score =  136 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 10/108 (9%)

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L++   G      +D +  +  L+      +  + I R+KGLGEM   QL ET MD   R
Sbjct: 699 LYKGENG------YDVDSFEAALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVR 752

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
            LL+V I   +       +    LMG + + R  FI+  A    ++  
Sbjct: 753 RLLKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796


>gi|325129012|gb|EGC51862.1| DNA gyrase, B subunit [Neisseria meningitidis N1568]
          Length = 796

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 225/571 (39%), Positives = 332/571 (58%), Gaps = 19/571 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95
            +   + Y A SI++LEGLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V DNGRG+P   HPK   +S  E+I+T LHAGGKFDN++Y+ISGGLH
Sbjct: 62  KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD + +T+ R       +F RG    PL+      +K+GT + F    + 
Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGD-SDKKGTTVRFLASAET 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           FG+   +    L K  +  ++L+  V    + +++        + E F   GG+  ++Q 
Sbjct: 180 FGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
               ++ +  +IF    EK G    +VE A+ W +     +  + N I   +GGTH + L
Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R  +TR I  Y E  +   K  +    DD+      +LSV + +P+F+ QTK KLVS + 
Sbjct: 289 RQVMTRTINNYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEI 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
              V   +      +L +NP EA  +   +++ +  R   RK RE+ R+   +  L LPG
Sbjct: 349 GPVVNEVISQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSA Q R+R  QA+LPL+GKILNV  A  EK+  +Q
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468

Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALG     +    E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ 
Sbjct: 469 EVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++++  PPL++   G +  Y  DE  K + L
Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWL 559



 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 592 HDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651
           +     ++ L+   ++ +  + I R+KGLGEM   QL ET MD + R LL+V I   +  
Sbjct: 706 YPVGSFEEALDILLQNVQKGMSIQRYKGLGEMNPEQLWETTMDPSVRRLLKVRIEDAI-- 763

Query: 652 LKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
                +    LMG + + R  FI+  A    ++  
Sbjct: 764 --AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796


>gi|296159125|ref|ZP_06841952.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia sp. Ch1-1]
 gi|295890686|gb|EFG70477.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia sp. Ch1-1]
          Length = 661

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 238/674 (35%), Positives = 357/674 (52%), Gaps = 42/674 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +  +  Y  +SI++L+GLEPV+ RPGMY   T  +   H+  EVIDNA DE + G+ 
Sbjct: 1   MSTKKPNAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGHG 57

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151
             I V+L  +  ++V D+GRGIP   HP+      +EI+ T LHAGGKFD      Y  S
Sbjct: 58  RQITVTLHADHSVSVEDDGRGIPFGLHPE-EGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITF 209
           GGLHGVG+SV NALS  L VTV R+  +    F+ G     LE +   +   K GTR+T 
Sbjct: 117 GGLHGVGVSVTNALSTRLDVTVWREGKVAELSFANGDVARELEVRPATKGDKKSGTRVTA 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
             +PK F          L ++ +SKA L   V+     +K         E++ + +  GL
Sbjct: 177 WANPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVTLINEK-------TGERQSWKYEDGL 228

Query: 270 KTYLQTKLENRSLISSEIFTGKT-------EKKGTHRGTVEWAIAWCEENPEI-TSYCNT 321
           + YL   +    L+       +        E+         W +AW EE   +  SY N 
Sbjct: 229 RGYLLEGMNGSDLLIPLFEGERYVENSRASEETFAEGEGASWVVAWSEEGTLMRESYVNL 288

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFA 380
           I T  GGTHESGLR  L + +K + EL     + + ++++D+      +LS  + +P+F 
Sbjct: 289 IPTPAGGTHESGLRDGLFQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQ 348

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQ K +L S DA + V +  R   + +L Q+     KL + VI++++ R R  ++ E  +
Sbjct: 349 GQIKERLNSRDAVKLVSSFARPALELWLNQHVELGKKLADLVIKQAQARTRAGQKVEKRK 408

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
            + +  L  PGKL DC        ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN  
Sbjct: 409 SSGVAVL--PGKLTDCESTEIGRNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTW 466

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLLT 557
               +++  N ++ D+  A+G    S   +    +LRY K+ I++DADVDG+HI  LLLT
Sbjct: 467 ETERDRLFANNEVHDISVAIGVDPHSPDDKVDLSNLRYGKICILSDADVDGSHIQVLLLT 526

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--K 609
            F++    LIE+ H+ +  PPLFR+    +G K    +YA DE   + IL++ +K G   
Sbjct: 527 LFFKHFPQLIERGHVCVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDGVRD 586

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KAD 668
            +  ISRFKGLGEM A QL +T M+ + R L  V + +           +  LMG  +A 
Sbjct: 587 TQWSISRFKGLGEMSAEQLWDTTMNPDTRRLTPVALGELDYDATVA--RMTMLMGKGEAA 644

Query: 669 ERFKFIQERASFID 682
            R  +++E+ + ++
Sbjct: 645 SRRSWLEEKGNEVE 658


>gi|326332699|ref|ZP_08198962.1| DNA gyrase subunit B [Nocardioidaceae bacterium Broad-1]
 gi|325949527|gb|EGD41604.1| DNA gyrase subunit B [Nocardioidaceae bacterium Broad-1]
          Length = 730

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 233/716 (32%), Positives = 346/716 (48%), Gaps = 58/716 (8%)

Query: 17  QGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHH 76
           + +  +   S       +     + + Y+A+ + +LEGLE VR RPGMYIG TD + L H
Sbjct: 23  RATPRRNPPSTIAATQYSQEPIISDNTYNAAHLLVLEGLEAVRKRPGMYIGSTDTRGLMH 82

Query: 77  LFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTT 136
              E+IDN +DE +AG A  +EV++  +G + V D+GRGIP +  P+      +E++ T 
Sbjct: 83  CLWEIIDNGVDEALAGVAGHVEVTMHPDGSVEVYDDGRGIPTDKEPR-TGLPGVEVVATK 141

Query: 137 LHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI-------- 188
           LHAGGKF   +Y  +GGLHGVG+SVVNALS  + + V R        F RG+        
Sbjct: 142 LHAGGKFGGGSYNATGGLHGVGLSVVNALSSRMDIDVDRSPAQQGMSFRRGVPGVFDGDG 201

Query: 189 ------PLSPLEKKEK--VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
                 P S L +K K   + K GTR+ F PD +IF   A F+   LL   +  +++   
Sbjct: 202 PTAGFTPQSGLSRKGKRVAKGKTGTRVRFWPDRQIFTKDARFELEGLLGRARQTSFIVPG 261

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGK--------- 291
           ++               P +E+F   GG+  ++    ++  +       G          
Sbjct: 262 LELVIRDLSGAD-----PVEEKFRHDGGIAEFVDFLAKDEPVSGVLRLQGSDTFTETVPM 316

Query: 292 -------TEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
                  T +       V+ A+ W      EI S+ N I T +GGTH SG   ALT+   
Sbjct: 317 LDDAGHMTPQDVERELGVDIAVRWGSGYDTEIRSFVNVIATPKGGTHVSGFENALTKTFN 376

Query: 344 KYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
                 +  +        +D++     +++V + EP+F GQTK  L +  A+  V   + 
Sbjct: 377 DAMRAAKVLKVNDKDIVKEDVLEGLTAVVTVRLAEPQFEGQTKEILGTPAARSVVRKVVA 436

Query: 402 DPFDHYLVQNPIEATKLLEWVIE----RSEERLRRRKQR-EVNRKTAIRKLRLPGKLADC 456
                +L ++     +  + V+E     S+ RL  R+Q+    RK A+    LP KLADC
Sbjct: 437 AEMKTFLTESRGAQKQQAKLVMEKVYAASKTRLSLRQQKENQRRKNALESSALPSKLADC 496

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
                   ELFIVEGDSA G+AK ARN   QA+LP+RGKILNV  A    +  N +   +
Sbjct: 497 RTTDD-RAELFIVEGDSALGTAKVARNSEFQALLPIRGKILNVQKASVGDMLKNAECSSI 555

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           +Q +G  T   +  +  RY K+I M DAD DGAHI +LL T F++ M +LI    ++   
Sbjct: 556 IQVVGTGTGRSFDLDAARYGKIIFMADADSDGAHIRTLLATLFFKYMPELIAAGKVYTAV 615

Query: 577 PPLFRI-----TQG-TKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLK 629
           PPL RI      +G  K +Y + +   Q+ L E KK     K  + R+KGLGEM A QL 
Sbjct: 616 PPLHRIEISNPKKGMEKYIYTYSDPELQRKLAELKKKNVSWKDPVQRYKGLGEMDADQLA 675

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           ET MD   RTL R+ ++    +        + LMG++   R +FI      + +  
Sbjct: 676 ETTMDPRHRTLRRLTLDDADAAAA----VFDLLMGSEVAPRKEFIVAGGGQLSETD 727


>gi|9971917|gb|AAG10479.1|AF279106_41 predicted topoisomerase IV subunit B [uncultured marine gamma
           proteobacterium EBAC31A08]
          Length = 631

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 242/649 (37%), Positives = 367/649 (56%), Gaps = 26/649 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A ++YDA +I +L GL+PV+ RPGMY   TD    +HL  EV+DN++DE ++GY + I+V
Sbjct: 2   AKNSYDAQAIEVLSGLDPVKKRPGMY---TDTSNPNHLIQEVLDNSVDEALSGYCSNIKV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           S+  +GF+ V D+GRG+P++ HP+    S +E+IL  LHAG KF    Y  SGGLHGVG+
Sbjct: 59  SVLKDGFIKVSDDGRGMPIDEHPEH-KVSGVELILCKLHAGAKFSGDDYNFSGGLHGVGV 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGD 218
           SVVNALSDEL V V R +  +   F+ G   S L+   +V     GT I F+P+P  F  
Sbjct: 118 SVVNALSDELEVRVKRDSKEYQITFNNGDKSSELKPIGEVGLRNSGTSIKFKPNPTYFET 177

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
                  +L  + ++KA L   +   +  +K+  +K      +++YF  GLK+YL    E
Sbjct: 178 I-EIQIKQLKHLLKAKAVLCPGLTIEFVNEKKTDDK------QKWYFEDGLKSYLIDSSE 230

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAW---CEENPEITSYCNTILTDEGGTHESGLR 335
              L+  +        K +    +E+AI W     +N    +Y N I T +GG+H +G +
Sbjct: 231 GADLVLLDSIVCS---KKSQAQELEFAINWSLRPPKNKLDETYVNLIPTAQGGSHLNGFK 287

Query: 336 VALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
             L   +K++ E      + + I +DD++ +A+ I+S  ++ P+FAGQTK +L S D   
Sbjct: 288 AGLLDSLKEFCEYRNLLPKGLKINADDVLNNAIFIISSKLQNPQFAGQTKERLDSKDHMS 347

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454
            V +  +D    +L  +  E  ++ E  I  ++ R +     E  +    R   LPGKL+
Sbjct: 348 FVSSTTKDILSIWLNTHTEEGERIAELAIMSAQTRAKVSNIVERKKT--FRGPALPGKLS 405

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC+    + TELF+VEGDSAGGSAKQAR RS QA++PLRGKILN     S +I  +Q+I 
Sbjct: 406 DCNSQDLNETELFLVEGDSAGGSAKQARERSFQAIMPLRGKILNTWDLESAEIIKSQEIK 465

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           +L  A+G    +      LRY K+ I+ DAD DG HIA+LL   F +    L+++  +++
Sbjct: 466 NLSTAIGVLPGNNDL-SSLRYGKICILADADSDGLHIATLLCALFLRHYKSLVQEGRIYI 524

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAM 633
             PPL+RI  G   +YA D++ + +I+ EF KK GK K+ I RFKGLGEM   QL+ET M
Sbjct: 525 SMPPLYRIDSGKDVLYALDDKQRDEIVTEFKKKKGKPKVNIQRFKGLGEMNPPQLRETVM 584

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           D   R L+++ I+   N+       ++K     A  R ++++++ S   
Sbjct: 585 DPATRQLVQLSISSSDNANSMMDLLLSK---KNAPARKEWLEKKGSLAK 630


>gi|327484923|gb|AEA79330.1| Topoisomerase IV subunit B [Vibrio cholerae LMA3894-4]
          Length = 602

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 234/622 (37%), Positives = 342/622 (54%), Gaps = 24/622 (3%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MY   TD    +HL  EVIDN++DE +AGY + I+V L  +  L V+D+GRG+PV+ HP+
Sbjct: 1   MY---TDTTRPNHLGQEVIDNSVDEALAGYTSKIQVILHADQSLEVIDDGRGMPVDIHPE 57

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
               S +E+IL  LHAGGKF N  Y+ SGGLHGVGISVVNALS  + V V R   ++   
Sbjct: 58  -EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVAVRRDGQVYEIA 116

Query: 184 FSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
           F  G  ++ L       R   GT + F PD K F     F  +RL+   ++KA L   ++
Sbjct: 117 FEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSPN-FSVSRLINNLRAKAVLCPGLE 175

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
             ++      E         + +  GLK YL   ++  +L+  E FTG+   +     T 
Sbjct: 176 IIFTDKVNNNE-------HRWLYEDGLKDYLAEGVKGYTLLPEEPFTGEFTAQTEA-ATW 227

Query: 303 EWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDD 361
                         SY N I T +GGTH +GLR  L   ++++ E      R + +  +D
Sbjct: 228 AVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNLLPRGVKLTGED 287

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
           +      +LS+ +++P+FAGQTK +L S  +   V   ++D F  +L + P  A +L E 
Sbjct: 288 VFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAFSLWLNEKPQLAEQLAEV 347

Query: 422 VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
            I  +  R+R    ++V RK       LPGKL DC+    + TELF+VEGDSAGGSAKQA
Sbjct: 348 CIANAHSRMR--ASKKVVRKKIASGPALPGKLTDCTVQDLNRTELFLVEGDSAGGSAKQA 405

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541
           R+R  QAV+PLRGKILN     ++++  +Q++ D+  ALG    S   E  LRY KV I+
Sbjct: 406 RDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVALGIDPDSDNLEA-LRYGKVCIL 464

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
            DAD DG HIA+LL   F +    L++  H+++  PPL+RI  G +  YA D++ K+ +L
Sbjct: 465 ADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRIDCGKEVFYALDDQEKEGVL 524

Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
           E   +  K K+ + RFKGLGEM   QL+ET MD N R L+++ I+      + T + ++ 
Sbjct: 525 ERLSQK-KAKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDD----AEATDEMMDM 579

Query: 662 LMGTK-ADERFKFIQERASFID 682
           L+G K AD+R  ++Q      +
Sbjct: 580 LLGKKRADDRRAWLQRNGDMAE 601


>gi|261364800|ref|ZP_05977683.1| DNA gyrase, B subunit [Neisseria mucosa ATCC 25996]
 gi|288566827|gb|EFC88387.1| DNA gyrase, B subunit [Neisseria mucosa ATCC 25996]
          Length = 796

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 229/596 (38%), Positives = 341/596 (57%), Gaps = 24/596 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + Y A SI++LEGLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ + I V+
Sbjct: 7   EEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCDKITVT 66

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  ++V DNGRG+P   HPK   +S  E+I+T LHAGGKFDN++Y+ISGGLHGVG+S
Sbjct: 67  IHADNSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLHGVGVS 125

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALSD + +T+ R       +F RG    PL+      +K+GT + F    + FG+  
Sbjct: 126 VVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGD-SDKKGTTVRFLASAETFGNV- 183

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +    L K  +  ++L+  V      +++        + E F   GG+  ++Q     +
Sbjct: 184 EYSFDILAKRIRELSFLNNGVDIELIDERD-------GKHESFALSGGVAGFVQYMNRKK 236

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + +  +IF    EK G    +VE A+ W +     +  + N I   +GGTH + LR  +T
Sbjct: 237 TPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMT 293

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y E  +   K  +    DD+      +LSV + +P+F+ QTK KLVS +    V 
Sbjct: 294 RTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVN 353

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADC 456
             +      +L +NP EA  +   +++ +  R   RK RE+ R+   +  L LPGKLADC
Sbjct: 354 EVINQALTDFLEENPNEAKIITSKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADC 413

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  EK+  +Q++  L
Sbjct: 414 QEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATL 473

Query: 517 VQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           + ALG    + ++  E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ ++++ 
Sbjct: 474 ITALGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIA 533

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
            PPL++   G +  Y  DE  K + L          +   R      +  ++L +T
Sbjct: 534 QPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVSDGR-----TIEGAELADT 584



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 7/106 (6%)

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           ++ +G      +D +  +  L    ++ +  + I R+KGLGEM   QL ET MD   R L
Sbjct: 698 KLYKGENE---YDVDSFETALNILLQNAQKGMSIQRYKGLGEMNPEQLWETTMDPTVRRL 754

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           L+V I   +       +    LMG + + R  FI+  A    ++  
Sbjct: 755 LKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796


>gi|86355681|ref|YP_467573.1| DNA gyrase subunit B [Rhizobium etli CFN 42]
 gi|86279783|gb|ABC88846.1| DNA gyrase subunit B protein [Rhizobium etli CFN 42]
          Length = 811

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 234/577 (40%), Positives = 343/577 (59%), Gaps = 16/577 (2%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEV 89
              +      S  Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE 
Sbjct: 2   SDTSATENGVSTEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEA 61

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
           +AG+A+++ V+L+ +G +TV DNGRGIP + H      S  E+I+T LHAGGKFD ++Y+
Sbjct: 62  LAGHADIVTVTLNPDGSVTVTDNGRGIPTDIHS-GEGVSAAEVIMTQLHAGGKFDQNSYK 120

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  L + + R   I    F+ G+  +PL+      +  GT ++F
Sbjct: 121 VSGGLHGVGVSVVNALSVWLKLKIRRHGKIHEMSFTHGVADAPLKVTGDAPDSTGTEVSF 180

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F     FD   L    +  A+L+  V+   +  +    K     +EE  + GGL
Sbjct: 181 MPSSETFT-MTEFDYGTLEHRLRELAFLNSGVRILLADKRHSDIK-----QEEMRYDGGL 234

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328
           + ++      +  +  +    + EK G    TVE A+ W +   E    + N I   +GG
Sbjct: 235 EAFVSYLDRAKKPLVDKPVAIRGEKDGI---TVEVAMWWNDSYHENVLCFTNNIPQRDGG 291

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  YA+ +    K  +++  +D       +LSV + +P+F+ QTK K
Sbjct: 292 THMAGFRAALTRQVVSYADNSGITKKEKVTLQGEDCREGLTAVLSVKVPDPKFSSQTKDK 351

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           LVS + +  VE+ + +  + +  ++P EA  L+  V+E +  R   RK RE   RK A+ 
Sbjct: 352 LVSSEVRPVVESLVNEALNTWFEEHPSEAKILVGKVVEAAAAREAARKARELTRRKGALD 411

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS+     +E+F+VEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  +
Sbjct: 412 IASLPGKLADCSERDPAKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 471

Query: 506 KIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           K+ ++Q+I  L+ ALG          E LRY K+IIMTDADVDGAHI +LLLTFF+++M 
Sbjct: 472 KMLSSQEIGTLITALGTGIGKDEFNAEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 531

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +LIE+ HL++  PPL+++ +G    Y  DE+  ++ L
Sbjct: 532 ELIERGHLYIAQPPLYKVARGKSVQYLKDEKALEEYL 568



 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 4/88 (4%)

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           + +L+     G+  + + R+KGLGEM A QL ET +D N R+LL+V++        D   
Sbjct: 727 RALLDAIFASGRKGLTMQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVADAT----DADG 782

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
              +LMG + + R +FIQ+ A  + ++ 
Sbjct: 783 LFARLMGDEVEPRREFIQDNALSVANLD 810


>gi|319639457|ref|ZP_07994207.1| DNA gyrase subunit B [Neisseria mucosa C102]
 gi|317399352|gb|EFV80023.1| DNA gyrase subunit B [Neisseria mucosa C102]
          Length = 796

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 237/645 (36%), Positives = 357/645 (55%), Gaps = 40/645 (6%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + Y A SI++LEGLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ + I V+
Sbjct: 7   EEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCDKITVT 66

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  ++V DNGRG+P   HPK   +S  E+I+T LHAGGKFDN++Y+ISGGLHGVG+S
Sbjct: 67  IHADNSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLHGVGVS 125

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALSD + +T+ R       +F RG    PL+      +K+GT + F    + FG+  
Sbjct: 126 VVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGD-SDKKGTTVRFLASAETFGNV- 183

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +    L K  +  ++L+  V    + +++        + E F   GG+  ++Q     +
Sbjct: 184 EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQYMNRKK 236

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + +  +IF    EK G    +VE A+ W +     +  + N I   +GGTH + LR  +T
Sbjct: 237 TPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMT 293

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y E  +   K  +    DD+      +LSV + +P+F+ QTK KLVS +    V 
Sbjct: 294 RTINNYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVN 353

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADC 456
             +      +L +NP EA  +   +++ +  R   RK RE+ R+   +  L LPGKLADC
Sbjct: 354 EVINQALTDFLEENPTEAKIITSKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADC 413

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            +     +EL++VEGDSAGGSA Q R+R  QA+LPL+GKILNV  A  EK+  +Q++  L
Sbjct: 414 QEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATL 473

Query: 517 VQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           + ALG     +    E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ ++++ 
Sbjct: 474 ITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIA 533

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI----EISRFKGLGE---MLASQ- 627
            PPL++   G +  Y  DE  K + L          +     I      GE     A Q 
Sbjct: 534 QPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVSDGRTIE-----GEELANTAKQF 588

Query: 628 -LKETAMDANKRTLLRVEINK-------DLNSLKDTQDSINKLMG 664
            L +T ++   R +  + ++        DL++ +    ++ +L G
Sbjct: 589 LLAKTVIEQESRIIDELVLHAMLHASPVDLSTAESADRAVAELSG 633



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%)

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           ++ +G      +D +  +  L+      +  + I R+KGLGEM   QL ET MD   R L
Sbjct: 698 KLYKGDNE---YDIDSFEAALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPTVRRL 754

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           L+V I   +       +    LMG + + R  FI+  A    ++  
Sbjct: 755 LKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALLAQNIDA 796


>gi|269219419|ref|ZP_06163273.1| putative DNA gyrase subunit B [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269211115|gb|EEZ77455.1| putative DNA gyrase subunit B [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 735

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 246/719 (34%), Positives = 366/719 (50%), Gaps = 77/719 (10%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +++++Y A  +++LEGLE VR RPGMYIG TD + L H   E+IDNA+DE + G+A+ +E
Sbjct: 13  TSNESYTARHLQVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNAVDEALEGHADAVE 72

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V L  +G + V DNGRG+PV+  P     S +E++ T LHAGGKF   +Y  SGGLHGVG
Sbjct: 73  VRLYADGSVEVRDNGRGVPVDEVP-GVGLSGVEVVYTKLHAGGKFGGGSYGSSGGLHGVG 131

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL---------------------EKKE 197
            SVVNALS+ + V V R    +  +F RG P                         +   
Sbjct: 132 ASVVNALSERMDVQVDRGGKTYQMQFHRGEPGRFSDGASGPDPRAPFSAFTESSVLDVVG 191

Query: 198 KV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-- 254
           KV +NK GTR+ +  DP+IF   A F    L++  +  A+L   +      ++E A    
Sbjct: 192 KVAKNKSGTRVRYWADPEIFLASAAFSYEELVERARQTAFLVPGLTISLVDEREGAAGEN 251

Query: 255 ----------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT------ 292
                           +  P  E F F GG   ++     + ++ ++   TG+       
Sbjct: 252 AAGENAEGEGDEGQAPHEGPRTETFRFDGGTVDFVDFLAPDAAVTATMRLTGEGTFAEKV 311

Query: 293 -----------EKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340
                       ++      V+ A+ W ++      S+ N I T  GGTH+SG    L +
Sbjct: 312 PVLDAESGHLVSREVERAVAVDVALRWGKDYETRVESFVNIIRTPGGGTHQSGFEQGLMK 371

Query: 341 GIKKYAEL-----TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            ++   E        + +   I  DD++     +++V + EP+F GQTK  L +   +  
Sbjct: 372 VVRSLVESNSRRLKMSAKDPRIEKDDVLAGLTAVVTVRLPEPQFEGQTKEILGTSAVRGI 431

Query: 396 ----VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK-TAIRKLRLP 450
               VE  L             E ++LLE V+     R+  R  +E++R+  A+    LP
Sbjct: 432 VSGVVERELGAILGSSKRDQKTETSRLLEKVVAEMRARVTARMHKEISRRKNALEASSLP 491

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
            KLADC       TELFIVEGDSA G+AK AR+   QA+LP+RGKILNV  A +  I  N
Sbjct: 492 AKLADCRSEDVAETELFIVEGDSALGTAKLARSSEFQALLPIRGKILNVQKASTADILKN 551

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           +++ +++Q +G  +   +     RY KVI+MTDADVDGAHI +LLLT F++ M  L+++ 
Sbjct: 552 KEVSEIIQVVGAGSGRTFDLPAARYGKVIMMTDADVDGAHIRTLLLTLFFRYMRPLVQEG 611

Query: 571 HLFLISPPLFRI-----TQGTKS-VYAHDEEHKQKILEEFKKHGKGKIE-ISRFKGLGEM 623
            ++   PPL RI       G KS +Y + E+     L + ++ GK   E I R+KGLGEM
Sbjct: 612 RVYAAVPPLHRIEVSGGKGGKKSYIYTYSEDQLHAELRKLERAGKSYREPIQRYKGLGEM 671

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            A QL ET MD ++RTL R+ +  +  +L + +     LMG     R +FI E A+ +D
Sbjct: 672 DAHQLAETTMDPSRRTLRRIRMEDE-RALMEAETVFELLMGNDVAPRREFIVEGAAAVD 729


>gi|149912808|ref|ZP_01901342.1| DNA gyrase, B subunit [Roseobacter sp. AzwK-3b]
 gi|149813214|gb|EDM73040.1| DNA gyrase, B subunit [Roseobacter sp. AzwK-3b]
          Length = 805

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 228/569 (40%), Positives = 336/569 (59%), Gaps = 16/569 (2%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
            + D Y A SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DN +DE +AG+A+ +
Sbjct: 6   PSPDEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGHADAV 65

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V++  +  ++V DNGRGIPVE H +    S  E+I+T LHAGGKFD ++Y++SGGLHGV
Sbjct: 66  NVTIHADSSISVSDNGRGIPVEIHEE-EGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGV 124

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+ L + V R       +F  G  +  L        ++GT + F    + F 
Sbjct: 125 GVSVVNALSEWLELRVWRNGKEHYARFEGGDTVEHLRVVGDANGRKGTEVRFLASTETFS 184

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   +    L K  +  A+L+  V+     ++        P   E ++ GG++ +++   
Sbjct: 185 NL-EYSFDTLEKRLRELAFLNSGVRIILRDER-----PAEPLVTELHYDGGVQEFVKYLD 238

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            +++ + +E  +   EK G     VE A+ W +     +  + N I   +GGTH +G R 
Sbjct: 239 RHKTSMIAEPISINGEKDGV---GVEVAMWWNDSYHETVLPFTNNIPQRDGGTHMAGFRG 295

Query: 337 ALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I+KYA+ +   +        DD       +LSV + +P+F+ QTK KLVS + + 
Sbjct: 296 ALTRTIQKYAQESGIAKREKVTFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRP 355

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            VE  + +    +  +NP EA +++  +IE +  R   RK R+   RKTA+    L GKL
Sbjct: 356 AVEGLVYEKLTEWFEENPNEAKQIVGKIIEAAMAREAARKARDLTRRKTAMDVNYLAGKL 415

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
            DCS+     TELF+VEGDSAGGSA+  R+RS QAVLPLRGKILNV  A  +++  +Q+I
Sbjct: 416 KDCSEKDPSKTELFLVEGDSAGGSAQTGRDRSTQAVLPLRGKILNVERARFDRMLGSQEI 475

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
            +LV ALG    R ++    LRY K++IMTDADVDGAHI +LLLTFFY++M +LIE  +L
Sbjct: 476 GNLVVALGTGIGRDEFNISKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIENGYL 535

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++  PPL+++ +G   VY  DE   +  L
Sbjct: 536 YIAQPPLYKVMRGKSEVYLKDEPALEDYL 564



 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L+   K G+  + + R+KGLGEM   QL ET +D + RTLL+V+I+     + +  D 
Sbjct: 722 DLLDAILKEGEKGLTLQRYKGLGEMNPGQLWETTLDPDARTLLQVKIDD----VAEADDL 777

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R +FIQ+ A  ++++ 
Sbjct: 778 FTKLMGDVVEPRREFIQQNALNVENLD 804


>gi|78484358|ref|YP_390283.1| DNA gyrase, B subunit [Thiomicrospira crunogena XCL-2]
 gi|78362644|gb|ABB40609.1| DNA gyrase subunit B [Thiomicrospira crunogena XCL-2]
          Length = 813

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 232/572 (40%), Positives = 346/572 (60%), Gaps = 19/572 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYA 94
           A       YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN +DE +AG+ 
Sbjct: 5   AENPIQPEYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNGIDEALAGHC 64

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + + V++  +G ++V DNGRGIPV  H +    S  E+I+T LHAGGKFD+++Y++SGGL
Sbjct: 65  DKVVVTIHTDGSVSVTDNGRGIPVGLHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 123

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS+ELH+T+ R+  ++ Q +  G+P  PL+   +  ++ GT I F P  +
Sbjct: 124 HGVGVSVVNALSEELHLTIKREGHVWKQTYRHGVPDEPLKAVSET-DETGTEIRFLPSRE 182

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
            F     F    LLK  +  ++L+  V       ++          E F F GG++ ++ 
Sbjct: 183 TFTQT-EFSFDYLLKRLRELSFLNSGVHIELLDKRD-------DRHEVFEFEGGIRAFVD 234

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               N++ I+ E F   T +      TVE A+ W E     I  + N I   +GGTH SG
Sbjct: 235 YINANKTPINQEAFYFSTVRDDI---TVEVAMQWSEAYQESIFCFTNNIPQRDGGTHLSG 291

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR + +YAE      K  +S+  DD       ++SV + +P+F+ QTK KLVS +
Sbjct: 292 FRAALTRTLNQYAEKEGLTKKYKMSVSGDDAREGLAAVISVKVPDPKFSSQTKDKLVSSE 351

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLP 450
            +  VE A+ +    YL++NP +A  +   +++ +  R   RK R    RK A+    LP
Sbjct: 352 VKTAVETAMNEKLAEYLLENPKDAQSVFAKIVDAARAREAARKAREMTRRKGALDIAGLP 411

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+  +
Sbjct: 412 GKLADCQEKDPARSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLAS 471

Query: 511 QQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
            ++  L+ ALGC     +Y  + LRY ++IIMTDADVDG+HI +LLLTFFY++M +LIE+
Sbjct: 472 AEVGTLITALGCGIGHEEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIER 531

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
            ++++  PPL+++ +G +  Y  D+   +  L
Sbjct: 532 GYIYIAQPPLYKVKKGKQEAYLKDDAELENYL 563



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G K     +    ++ ++      K    I R+KGLGEM   QL ET M+A  R LL
Sbjct: 716 IQRGEKQE---NVSSFKEAMDWLLSEAKRGQSIQRYKGLGEMNPEQLWETTMNAEARRLL 772

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I+  +            LMG + + R  FI+  A   +++ 
Sbjct: 773 QVTISDAIT----ADQVFTTLMGDEVEPRRNFIESNALKAENID 812


>gi|317050926|ref|YP_004112042.1| DNA gyrase subunit B [Desulfurispirillum indicum S5]
 gi|316946010|gb|ADU65486.1| DNA gyrase, B subunit [Desulfurispirillum indicum S5]
          Length = 799

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 248/601 (41%), Positives = 353/601 (58%), Gaps = 34/601 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y A SI++LEGLE VR RPGMYIG T    LHHL  EV+DN++DE +AG+ + +EV +
Sbjct: 4   QAYGADSIKVLEGLEAVRKRPGMYIGSTGITGLHHLVYEVVDNSIDEALAGHCDTVEVVI 63

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  +TV DNGRGIP E H K  N+S  E++LT LHAGGKFD+S+Y++SGGLHGVGISV
Sbjct: 64  HTDNSITVTDNGRGIPTEFH-KEQNRSAAEVVLTVLHAGGKFDSSSYKVSGGLHGVGISV 122

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+EL + + R   I  Q + RG P  PLE   + R+  GT+I F PD +IF     
Sbjct: 123 VNALSEELELEIKRDGKIHRQSYRRGFPQQPLEVVGETRS-TGTKIRFLPDSQIFET-TE 180

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F    L    + +A+L+  V    + ++       + +   F + GGL++++    +N+ 
Sbjct: 181 FSYEILSNRLREQAFLNAGVTIIITDER-------VEKTNTFLYEGGLRSFVTFLNKNKQ 233

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            +  E      EK       VE A+ + +     + +Y N I T +GGTH  G + ALTR
Sbjct: 234 TLHPEPVHVAGEKNDII---VEIALQYNDTYAETLFTYANNINTVDGGTHLVGFKSALTR 290

Query: 341 GIKKYAELTQNK--RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  Y    + K    I++  DD+      ++SV I +P+F GQTK KL + +A+  VE+
Sbjct: 291 CINTYISTAKIKGSEKITLSGDDIREGLTAVISVKIPDPQFEGQTKGKLGTTEAKSVVES 350

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCS 457
              + F  YL +NP  A ++L   I  +  R   RK RE+ R+   +    LPGKLADCS
Sbjct: 351 IFGEKFAAYLEENPDVAKQILNKAINAARAREAARKARELTRRKGVLEGNSLPGKLADCS 410

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           +     +EL+IVEGDSAGGSAKQ R+R NQA+LPL+GKILNV  A  +K+  +++I  L+
Sbjct: 411 EKDPAKSELYIVEGDSAGGSAKQGRDRRNQAILPLKGKILNVEKARFDKMLTSEEIKILI 470

Query: 518 QALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
            ALG    ++ +    +RY K+IIMTDADVDGAHI +LLLTFF+++M ++IE+ +L++  
Sbjct: 471 TALGTGIGQNDFDINKIRYHKIIIMTDADVDGAHIMTLLLTFFFRQMREIIERGYLYIAQ 530

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFK------KHGKGKIEISRFKGLGEMLASQLKE 630
           PPLF+I +G K +Y   E+  Q  L +        K  +GK           + A Q KE
Sbjct: 531 PPLFKIQKGKKEMYVKTEKQLQDYLIDLGLDNVELKDEEGK----------TITAEQCKE 580

Query: 631 T 631
            
Sbjct: 581 Y 581



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
             K      + GK  + I R+KGLGEM A QL +T M  + R+LL+V I+     L +  
Sbjct: 714 YLKFKNYVVERGKKGVGIQRYKGLGEMNADQLWDTTMCPDNRSLLQVSIDD----LVEAD 769

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
            +   LMG   + R +FI + A  + ++ 
Sbjct: 770 GAFTILMGDNVEPRREFIYDNALNVRNLD 798


>gi|110832865|ref|YP_691724.1| DNA gyrase subunit B [Alcanivorax borkumensis SK2]
 gi|110645976|emb|CAL15452.1| DNA gyrase, subunit B [Alcanivorax borkumensis SK2]
          Length = 805

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 232/580 (40%), Positives = 347/580 (59%), Gaps = 20/580 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
           A   YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I+
Sbjct: 2   AEKKYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGFCSEIK 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V +  +  +++ DNGRGIP E H +    S  E+I+T LHAGGKFD++TY++SGGLHGVG
Sbjct: 62  VVIHPDESMSIQDNGRGIPTEMHEE-EGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +T+ R   +  Q ++ G+P  PLE      +  GT + FRP P+ F +
Sbjct: 121 VSVVNALSEELKLTIRRNGQVHEQIYNHGVPAKPLEVVG-TTDSSGTAVHFRPSPETFSN 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V+     ++   E       + F + GGL  ++     
Sbjct: 180 I-KFHYDILAKRLRELSFLNSGVRIHLMDERSGDE-------DVFEYEGGLSAFVSYLNT 231

Query: 279 NRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           N++ ++       + E+ G     VE A+ W +     I  + N I   +GGTH +G R 
Sbjct: 232 NKTPLNQVFHFNYEREEDGI---AVEVAMQWNDSYQENIFCFTNNIPQRDGGTHLAGFRA 288

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y +      K   S   DD       ++SV + +P+F+ QTK KLVS + + 
Sbjct: 289 ALTRTLNSYMDKEGFLKKEKASPSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKS 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKL 453
            VE  + D F  YL++NP EA  +++ +I+ +  R   RK      RK A+    LPGKL
Sbjct: 349 AVEQTMGDLFQDYLLENPGEARSIVQKIIDAARARDAARKAREMTRRKGALDIAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC Q     +EL+IVEGDSAGGSAKQ R+R NQA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 409 ADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSQEV 468

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC   R +Y  E LRY ++IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++
Sbjct: 469 GTLITALGCGIGRDEYNIEKLRYHRIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYV 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612
           ++  PPL+++ +G +  Y  D+   ++ L        G  
Sbjct: 529 YIAQPPLYKVKKGKQETYLKDDPAMEEYLTTLALDKTGLY 568



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 4/91 (4%)

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
            H  + L+      +      R+KGLGEM A QL ET MD   R +L+V I   +     
Sbjct: 718 RHFAEALDWLMAQARRGTSFQRYKGLGEMNADQLWETTMDPESRRMLQVTIEDAI----A 773

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
                  LMG   D R +FI+  A  + ++ 
Sbjct: 774 ADQIFTCLMGDDVDPRRRFIESNALQVSNLD 804


>gi|225023582|ref|ZP_03712774.1| hypothetical protein EIKCOROL_00441 [Eikenella corrodens ATCC
           23834]
 gi|224943677|gb|EEG24886.1| hypothetical protein EIKCOROL_00441 [Eikenella corrodens ATCC
           23834]
          Length = 657

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 248/670 (37%), Positives = 364/670 (54%), Gaps = 40/670 (5%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y  SSI++L+GLEPV+ RPGMY   T   +  H+  E IDNA DE + G+A+ I+V 
Sbjct: 2   TKQYSESSIKVLKGLEPVKERPGMY---TRTDSPTHICQEAIDNAADEALGGFASRIDVE 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD----NSTYEISGGLHG 156
           +  +G L+V DNGRGIPV  HP+  N   +E++ T LHAGGKF+    +  Y  SGGLHG
Sbjct: 59  IHEDGSLSVSDNGRGIPVGLHPE-ENVPVVELVFTRLHAGGKFNKTSGDGAYAFSGGLHG 117

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKI 215
           VG+SV NALS  L V V R+   +   F  G  + PL +  K      GT +   PD   
Sbjct: 118 VGVSVTNALSRRLEVAVRREGCEYRIAFVGGDVVEPLTETGKCPAKDSGTTLRIWPDA-R 176

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           + +   +D A + ++ ++KA L   V    +         G+PE + +++P GL+ YL+T
Sbjct: 177 YFESPNYDIAEIERLLRAKAVLLPGVTVTLT-----RWHNGLPETQTWHYPDGLEGYLKT 231

Query: 276 KLENRSLISS-----EIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGT 329
            L  +             +G           V  A+ W EE      SY N I T  GGT
Sbjct: 232 LLAEQENTLPLLTLQNHVSGSHHGDFADGEGVSCALTWLEEGRITTESYVNLIPTPAGGT 291

Query: 330 HESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           HE+GL+ AL   +  +        R + I SDD+      +LSV + +P+F GQTK KL 
Sbjct: 292 HEAGLKQALFNAVSNFITHHNLLPRGVKIQSDDVFNRVAFVLSVRMLDPQFQGQTKDKLT 351

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR 448
           + DA + V +   DP + +L QN     K+ E  I++++ER+R    +++ ++       
Sbjct: 352 NRDALKLVASLAGDPVELWLNQNLEAGKKIAELAIKQAQERMRSV--KKIEKRKGSGISV 409

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKL DC        ELF+VEGDSAGGSAK AR+R+ QA+LPLRGK+LN      +++ 
Sbjct: 410 LPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDRNTQAILPLRGKVLNSFEVHRDQLF 469

Query: 509 NNQQIMDLVQALGCRTRSQYREEDL---RYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
            N +I D+  A+G     +    DL   RY K+ I++DADVDG+HI  LLLT FY+   +
Sbjct: 470 ANTEIHDISVAIGVDPHGEGDSPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHFPE 529

Query: 566 LIEQKHLFLISPPLFRI-------TQGTKSVYAHDEEHKQKILEEFKKHG--KGKIEISR 616
           LI + H+++  PPLFR+        +  +  YA D+   + ILE+ +K G  + +  ISR
Sbjct: 530 LIRRGHIYVAQPPLFRVDVAAQGRKKTARKFYALDQTELEGILEKLRKEGLRENQYSISR 589

Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQ 675
           FKGLGEM   QLK+T M  + R LLRV I +  +S + T +   KLMG  ++ +R  +++
Sbjct: 590 FKGLGEMNPDQLKDTTMHPDTRRLLRVHIPE--HSSEPTHNVFVKLMGKGESAQRRSWME 647

Query: 676 ERASFIDDVG 685
                 + + 
Sbjct: 648 AEGDKAE-LD 656


>gi|294668663|ref|ZP_06733759.1| DNA gyrase, B subunit [Neisseria elongata subsp. glycolytica ATCC
           29315]
 gi|291309425|gb|EFE50668.1| DNA gyrase, B subunit [Neisseria elongata subsp. glycolytica ATCC
           29315]
          Length = 796

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 229/596 (38%), Positives = 340/596 (57%), Gaps = 24/596 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + Y A SI++LEGLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ + I V+
Sbjct: 7   EEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCDKITVT 66

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  ++V DNGRG+P   HPK   +S  E+I+T LHAGGKFDN++Y+ISGGLHGVG+S
Sbjct: 67  IHADNSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLHGVGVS 125

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALSD + +T+ R       +F RG    PL       +K+GT + F    + FG+  
Sbjct: 126 VVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLRVVGD-SDKKGTTVRFLASAETFGNV- 183

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +    L K  +  ++L+  V      +++        + E F   GG+  ++Q     +
Sbjct: 184 EYSFDILAKRIRELSFLNNGVDIELIDERD-------GKHESFALSGGVAGFVQYMNRKK 236

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + +  +IF    EK G    +VE A+ W +     +  + N I   +GGTH + LR  +T
Sbjct: 237 TPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMT 293

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y E  +   K  +    DD+      +LSV + +P+F+ QTK KLVS +    V 
Sbjct: 294 RTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVN 353

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADC 456
             +      +L +NP EA  +   +++ +  R   RK RE+ R+   +  L LPGKLADC
Sbjct: 354 EVINQALTDFLEENPNEAKIITSKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADC 413

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  EK+  +Q++  L
Sbjct: 414 QEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATL 473

Query: 517 VQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           + ALG    + ++  E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ ++++ 
Sbjct: 474 ITALGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIA 533

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
            PPL++   G +  Y  DE  K + L          +   R      +  ++L +T
Sbjct: 534 QPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVSDGR-----TIEGAELADT 584



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%)

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           ++ +G      +D +  +  L    +  +  + I R+KGLGEM   QL ET MD   R L
Sbjct: 698 KLYKGENE---YDVDSFETALNILLQTAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRL 754

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           L+V I   +       +    LMG + + R  FI+  A    ++  
Sbjct: 755 LKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796


>gi|169632033|ref|YP_001705769.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter
           baumannii SDF]
 gi|169150825|emb|CAO99425.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter
           baumannii]
          Length = 822

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 229/581 (39%), Positives = 343/581 (59%), Gaps = 19/581 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85
                S +   Q+    YD+SSI++L GL+ VR RPGMYIG TD+   LHH+  EV+DNA
Sbjct: 2   SSESQSASQTEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNA 61

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AG+ + I V++     ++V DNGRGIP + HP+    S  E+ILT LHAGGKFD+
Sbjct: 62  IDEALAGHCDEIIVTIHEEESVSVSDNGRGIPTDIHPE-EGVSAAEVILTILHAGGKFDD 120

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +LH+T+ R   I  Q++  G P  PL    +  +  GT
Sbjct: 121 NSYKVSGGLHGVGVSVVNALSSKLHLTIYRAGQIHEQEYHHGDPQYPLRVIGET-DNTGT 179

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            + F P  + F     F+   L +  +  ++L+  V+     ++   E         + +
Sbjct: 180 TVRFWPSAETFSQTI-FNVEILARRLRELSFLNAGVRIVLRDERINLE-------HVYDY 231

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GGL  +++   E ++ ++           G    TVE A+ W +     +  + N I  
Sbjct: 232 EGGLSEFVKYINEGKNHLNEIFHFTADADNGI---TVEVALQWNDSYQENVRCFTNNIPQ 288

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTRG+ +Y E      K  +++  DD       I+SV + +P+F+ Q
Sbjct: 289 KDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQ 348

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441
           TK KLVS + +  VE A+   F  YL++NP  A  +   +I+ +  R   RK      RK
Sbjct: 349 TKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRK 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           +A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  
Sbjct: 409 SALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +K+ ++Q++  L+ ALGC   R +Y  + LRY K+IIMTDADVDG+HI +LLLTFF+
Sbjct: 469 ARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFF 528

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++M +L+E+ H+++  PPL+++ +G +  Y  D +  +  L
Sbjct: 529 RQMPELVERGHIYIAQPPLYKLKKGKQEQYIKDNDALETYL 569



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 17/126 (13%)

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           +  + LIE    +L         +G + +      +  ++ +   +  +  + I R+KGL
Sbjct: 714 KSWFKLIEDG-AYL--------QKGDRRIQV---ANFHQVWQHILQDSRRGMMIQRYKGL 761

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GEM A QL ET MD   R +L+V I+  +    +     + LMG   + R  FI+E A  
Sbjct: 762 GEMNAEQLWETTMDPENRNMLQVTIDDAI----EADRMFSCLMGDDVEPRRAFIEENALN 817

Query: 681 IDDVGT 686
            D +  
Sbjct: 818 AD-IDA 822


>gi|323516067|gb|ADX90448.1| Type IIA topoisomerase (DNA gyrase/topo II) [Acinetobacter
           baumannii TCDC-AB0715]
          Length = 822

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 228/581 (39%), Positives = 342/581 (58%), Gaps = 19/581 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85
                S +   Q+    YD+SSI++L GL+ VR RPGMYIG TD+   LHH+  EV+DNA
Sbjct: 2   SSESQSASQTEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNA 61

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AG+ + I V++  +  ++V DNGRGIP + HP+    S  E+ILT LHAGGKFD+
Sbjct: 62  IDEALAGHCDEIIVTIHEDESVSVSDNGRGIPTDIHPE-EGVSAAEVILTILHAGGKFDD 120

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +LH+T+ R   I  Q++  G P  PL    +  +  GT
Sbjct: 121 NSYKVSGGLHGVGVSVVNALSSKLHLTIYRAGQIHEQEYHHGDPQYPLRVIGET-DNTGT 179

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            + F P  + F     F+   L +  +  ++L+  V+     ++   E         + +
Sbjct: 180 TVRFWPSAETFSQTI-FNVEILARRLRELSFLNAGVRIVLRDERINLE-------HVYDY 231

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GGL  +++   E ++ ++           G     VE A+ W +     +  + N I  
Sbjct: 232 EGGLSEFVKYINEGKNHLNEIFHFTADADNGI---AVEVALQWNDSYQENVRCFTNNIPQ 288

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTRG+ +Y E      K  +++  DD       I+SV + +P+F+ Q
Sbjct: 289 KDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQ 348

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441
           TK KLVS + +  VE A+   F  YL++NP  A  +   +I+ +  R   RK      RK
Sbjct: 349 TKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRK 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           +A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  
Sbjct: 409 SALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +K+ ++Q +  L+ ALGC   R +Y  + LRY K+IIMTDADVDG+HI +LLLTFF+
Sbjct: 469 ARFDKMISSQDVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFF 528

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++M +L+E+ H+++  PPL+++ +G +  Y  D +  +  L
Sbjct: 529 RQMPELVERGHIYIAQPPLYKLKKGKQEQYIKDNDALETYL 569



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 17/126 (13%)

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           +  + LIE    +L         +G + +   +     ++ +   +  +  + I R+KGL
Sbjct: 714 KSWFKLIEDG-AYL--------QKGDRRIQVAN---FHQVWQHILQDSRRGMMIQRYKGL 761

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GEM A QL ET MD   R +L+V I+  +    +     + LMG   + R  FI+E A  
Sbjct: 762 GEMNAEQLWETTMDPENRNMLQVTIDDAI----EADRMFSCLMGDDVEPRRAFIEENALN 817

Query: 681 IDDVGT 686
            D +  
Sbjct: 818 AD-IDA 822


>gi|118590457|ref|ZP_01547859.1| DNA gyrase subunit B [Stappia aggregata IAM 12614]
 gi|118436920|gb|EAV43559.1| DNA gyrase subunit B [Stappia aggregata IAM 12614]
          Length = 817

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 237/581 (40%), Positives = 344/581 (59%), Gaps = 16/581 (2%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85
              PD+      +    Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA
Sbjct: 4   TSTPDNSPTPETNGGAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNA 63

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AG+A+ + V+L+ +G +TV DNGRGIP + H +    S  E+I+T LHAGGKFD 
Sbjct: 64  IDEALAGHADHVTVTLNPDGSVTVSDNGRGIPTDLHSE-EGVSAAEVIMTQLHAGGKFDQ 122

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +L + + R     S  F+ G  ++PL+       ++GT
Sbjct: 123 NSYKVSGGLHGVGVSVVNALSTKLELRIWRNGQEHSMTFAHGDAVAPLKVVGPANGRKGT 182

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            +TF P P  F     FD + L    +  A+L+  V+   +  + + ++      EE ++
Sbjct: 183 EVTFLPSPDTFTKT-EFDFSTLEHRLRELAFLNSGVRIILTDKRGVEDRV-----EELFY 236

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILT 324
            GGL+ +++     +  +       + E+ G    TVE A+ W +   E    + N I  
Sbjct: 237 EGGLEAFVRYLDRAKHPLIEAPINMRAERDGI---TVEAAMWWNDSYHEHVLCFTNNIPQ 293

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTR +  YAE T    K  +++  DD       +LSV + +P+F+ Q
Sbjct: 294 RDGGTHLAGFRAALTRQVTGYAESTGLMKKEKVNLSGDDCREGLTCVLSVKVPDPKFSSQ 353

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TK KLVS + +  VEN +      +L +NP  A  ++  V+E +  R   RK RE   RK
Sbjct: 354 TKDKLVSSEVRPVVENLISQILSEWLEENPAPAKTIVSKVVEAASAREAARKARELTRRK 413

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            A+    LPGKLADC +  A   ELF+VEGDSAGGSAKQ R+R NQAVLPLRGKILNV  
Sbjct: 414 GALDIASLPGKLADCQERDASKAELFLVEGDSAGGSAKQGRHRENQAVLPLRGKILNVER 473

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +K+ ++ +I  L+ ALG     +    E LRY K+IIMTDADVDGAHI +LLLTFF+
Sbjct: 474 ARFDKMLSSNEIGTLITALGTGIGKEEFNVEKLRYHKIIIMTDADVDGAHIRTLLLTFFF 533

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++M  LIE  ++++  PPL+++ +G    Y  D++  +  L
Sbjct: 534 RQMPQLIENGYIYIAQPPLYKVKRGQSEQYLKDQKALEDYL 574



 Score =  133 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 4/88 (4%)

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           + +L +    G+  I + R+KGLGEM   QL ET +D N R+LL+V++        D  D
Sbjct: 733 RALLTQIYAAGQKGISLQRYKGLGEMNPEQLWETTLDPNVRSLLQVKV----READDADD 788

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
              KLMG + + R +FIQE A  + ++ 
Sbjct: 789 IFTKLMGDEVEPRREFIQENALAVANLD 816


>gi|99079848|ref|YP_612002.1| DNA gyrase subunit B [Ruegeria sp. TM1040]
 gi|99036128|gb|ABF62740.1| DNA gyrase subunit B [Ruegeria sp. TM1040]
          Length = 805

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 225/580 (38%), Positives = 337/580 (58%), Gaps = 16/580 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
             N+ A   Y A SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DN +DE +AG+
Sbjct: 2   SENEQAPAEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGH 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ + V++  +  ++V DNGRGIPV+ H +    S  E+I+T LHAGGKFD+++Y++SGG
Sbjct: 62  ADRVTVTIHADSSVSVSDNGRGIPVDIHAE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALSD L + + R       +F RG  +  L       ++ GT + F    
Sbjct: 121 LHGVGVSVVNALSDWLELRIWRNGKEHVARFERGDTVKHLTVVGDCGDRTGTEVRFLAST 180

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
             F +   +    L K  +  A+L+  V+   + ++          + E ++ GG+  ++
Sbjct: 181 DTFSNL-EYSFETLEKRLRELAFLNSGVRIVVADER-----PAERLESELFYEGGVNEFV 234

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +    +++ +       K EK       VE A+ W +     +  + N I   +GGTH +
Sbjct: 235 KYLDRSKTPVMDAPIYIKGEKDDI---GVEIAMWWNDSYHETVLPFTNNIPQRDGGTHVA 291

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR I  YA+ +    K  +S   DD       +LSV + +P+F+ QTK KLVS 
Sbjct: 292 GFRGALTRTINSYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 351

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           + +  VE+ + +    +  +NP  A +++  +IE +  R   RK RE   RKTA+    L
Sbjct: 352 EVRPVVESLMGEKLAEWFEENPNVAKQVVGKIIEAALAREAARKARELTRRKTAMDVNFL 411

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
            GKL DCS+     TE+F+VEGDSAGGSA+  R+R  QA+LPL+GKILNV  A  +++ +
Sbjct: 412 AGKLKDCSEKDPAKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLS 471

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q+I +LV ALG    R ++  E LRY K++IMTDADVDGAHI +LLLTFFY++M +LIE
Sbjct: 472 SQEIGNLVMALGTGIGRDEFNIEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIE 531

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             +L++  PPL+++++G   VY  D+      L      G
Sbjct: 532 GGYLYIAQPPLYKVSRGKSEVYLKDQAAMDDYLINQGVDG 571



 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L+   + G+  + + R+KGLGEM   QL ET +D + RTLL+V ++     + +  D 
Sbjct: 722 DLLKAILEEGEKGLTLQRYKGLGEMNPDQLWETTLDPDARTLLQVRVDD----MIEADDL 777

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R +FIQ+ A  ++++ 
Sbjct: 778 FTKLMGDVVEPRREFIQKNALSVENLD 804


>gi|298370306|ref|ZP_06981622.1| DNA gyrase, B subunit [Neisseria sp. oral taxon 014 str. F0314]
 gi|298281766|gb|EFI23255.1| DNA gyrase, B subunit [Neisseria sp. oral taxon 014 str. F0314]
          Length = 796

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 229/596 (38%), Positives = 340/596 (57%), Gaps = 24/596 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
             Y A SI++LEGLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ + I V+
Sbjct: 7   KEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCDKITVT 66

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  ++V DNGRG+P   HPK   +S  E+I+T LHAGGKFDN++Y+ISGGLHGVG+S
Sbjct: 67  IHADNSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLHGVGVS 125

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALSD + +T+ R       +F RG    PL+      +K+GT + F    + FG+  
Sbjct: 126 VVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGD-SDKKGTTVRFLASAETFGNV- 183

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +    L K  +  ++L+  V      +++        + E F   GG+  ++Q     +
Sbjct: 184 EYSFDILAKRIRELSFLNNGVDIELIDERD-------GKHESFALSGGVAGFVQYMNRKK 236

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + +  +IF    EK G    +VE A+ W +     +  + N I   +GGTH + LR  +T
Sbjct: 237 TPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMT 293

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y E  +   K  +    DD+      +LSV + +P+F+ QTK KLVS +    V 
Sbjct: 294 RTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVN 353

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADC 456
             +      +L +NP EA  +   +++ +  R   RK RE+ R+   +  L LPGKLADC
Sbjct: 354 EVINQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADC 413

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  EK+  +Q++  L
Sbjct: 414 QEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATL 473

Query: 517 VQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           + ALG    + ++  E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ ++++ 
Sbjct: 474 ITALGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIA 533

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
            PPL++   G +  Y  DE  K + L          +   R      +  ++L +T
Sbjct: 534 QPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVSDGR-----TIEGAELADT 584



 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 7/106 (6%)

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           ++ +G      +D +  +  L    ++ +  + I R+KGLGEM   QL ET MD   R L
Sbjct: 698 KLYKGENE---YDVDSFETALNILLQNAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRL 754

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           L+V I   +       +    LMG + + R  FI+  A    ++  
Sbjct: 755 LKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796


>gi|119897406|ref|YP_932619.1| DNA topoisomerase IV subunit B [Azoarcus sp. BH72]
 gi|119669819|emb|CAL93732.1| topoisomerase IV subunit B [Azoarcus sp. BH72]
          Length = 657

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 243/662 (36%), Positives = 341/662 (51%), Gaps = 28/662 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
            S  YD SS R+L+GLEPVR RPGMY   T   +  H+  EVIDNA DE + G+A  I V
Sbjct: 2   TSKTYDESSFRVLKGLEPVRERPGMY---TRTDSPAHIIQEVIDNAADEALGGFAKKIHV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD----NSTYEISGGLH 155
           +L  +G +TV D+GRGIPV  HP+      + +  T LHAGGKFD    N  Y  SGGLH
Sbjct: 59  TLHLDGSVTVADDGRGIPVGLHPE-EGVPVVVLAYTRLHAGGKFDKREGNGAYAFSGGLH 117

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPK 214
           GVG++V NALS  + V V R   I    FS G   +  +  +     + GTR+   PDPK
Sbjct: 118 GVGVAVTNALSTRVEVEVKRDGKIHRIDFSDGGENIGAVRIEGDCGRQTGTRVRVWPDPK 177

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
            F          L ++ +SKA L   V      ++                 G LK    
Sbjct: 178 YFEAPR-VPMNELERLLRSKAVLLSGVSVRLDIEQAAGPALTKTWSYPEGLAGYLKELAG 236

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGL 334
                  + ++E + GK +          WA+AW E      SY N I T  GGTHESGL
Sbjct: 237 DVEPVAPIFTAEKYAGKDDASFAPGEGAAWALAWFESAVPSESYVNLIPTVNGGTHESGL 296

Query: 335 RVALTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
           R  +   +K + E      R + +  +D+      +LS  + +P+F GQ K KL S +A 
Sbjct: 297 RAGVFEAVKSFIEHHTLLPRGVKLQQEDVCGRMSFLLSARLLDPQFQGQVKEKLNSREAV 356

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
           + V   LRDPF+ +L  +      + E  I+++  R +  ++ E  + + +  L  PGKL
Sbjct: 357 KLVSTQLRDPFEIWLNNHVEAGKAIAELSIKQALARQKNAQKVEKKKTSGVAVL--PGKL 414

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           +DC        ELF+VEGDSAGGSAK ARN+  QA+LPLRGK+ N      +++  N +I
Sbjct: 415 SDCESEDIAENELFLVEGDSAGGSAKMARNKETQAILPLRGKVQNAWEIDPDRLLANAEI 474

Query: 514 MDLVQALGCRTRSQYREEDL---RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
            D+  ALG          DL   RY K++IM+DADVDG+HI +LLLT F++    LIE  
Sbjct: 475 HDIAVALGVDAHRADSSPDLSGLRYGKIVIMSDADVDGSHIQTLLLTLFFRHFPKLIENG 534

Query: 571 HLFLISPPLFRIT---QGTK----SVYAHDEEHKQKILEEFKKHG--KGKIEISRFKGLG 621
           H+++  PPL+R+    QG K     +YA D+     I +   + G     IEI RFKGLG
Sbjct: 535 HIYVAQPPLYRVDVPAQGKKRPARRLYALDDGELAAIRDRLAQEGFKPDAIEIGRFKGLG 594

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQERASF 680
           EM   QL+ET MD   R +L V++     +++ T      LMG  +A  R  +++E+   
Sbjct: 595 EMNPDQLRETTMDPATRRVLPVQV--RAEAIEQTLKMFTLLMGKGEASGRRAWMEEKGDT 652

Query: 681 ID 682
           ++
Sbjct: 653 VE 654


>gi|255261451|ref|ZP_05340793.1| DNA gyrase, B subunit [Thalassiobium sp. R2A62]
 gi|255103786|gb|EET46460.1| DNA gyrase, B subunit [Thalassiobium sp. R2A62]
          Length = 805

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 226/578 (39%), Positives = 340/578 (58%), Gaps = 16/578 (2%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           N+ +++ Y A SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DN +DE +AG+A+
Sbjct: 4   NEQSNEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGHAD 63

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            + V++  +  ++V DNGRGIPV  H +    S  E+I+T LHAGGKFD+++Y++SGGLH
Sbjct: 64  HVAVTIHADHSVSVSDNGRGIPVGMHEE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGGLH 122

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS  L + V R +     KFS G  +  L  + + + ++GT + F      
Sbjct: 123 GVGVSVVNALSVWLELRVWRDDKEHYAKFSHGETVEHLRVEGEAKGRKGTEVRFLASTDT 182

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   +    L +  +  A+L+  VK     ++          +   ++ GG+K +++ 
Sbjct: 183 FSNL-EYSFEILERRLRELAFLNSGVKIILRDER-----PAEALETTLFYDGGVKEFVKY 236

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
              +++ +  +      EK       +E A+ W +   E    + N I   +GGTH +G 
Sbjct: 237 LDRSKTAMIEDPIFIVGEKDDI---GIEVAMWWNDSYHENVLPFTNNIPQRDGGTHMAGF 293

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR I  YA+ +    K  +S   DD       +LSV + +P+F+ QTK KLVS + 
Sbjct: 294 RGALTRTINNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEV 353

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
           +  VE+ + +    +  +NP EA  ++  +IE +  R   RK RE   RKTA+    L G
Sbjct: 354 RPAVESLMNEKLSEWFEENPNEARLIVSKIIEAAVAREAARKARELTRRKTALDVNFLAG 413

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL DCS+     TE+F+VEGDSAGGSA+  R+R  QAVLPLRGKILNV  A  +++  +Q
Sbjct: 414 KLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRRTQAVLPLRGKILNVERARFDRMLGSQ 473

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           +I +LV ALG    R +++ E LRY K++IMTDADVDGAHI +LLLTFF+++M +LIE  
Sbjct: 474 EIGNLVMALGTGIGRDEFKIEKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQMPELIEGG 533

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +L++  PPL+++ +G   VY  D+      L +    G
Sbjct: 534 YLYIAQPPLYKVARGRSEVYLKDQAALDDYLIDQGIDG 571



 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L    + G+  + + R+KGLGEM   QL ET +D + RTLL+V++      + +  D 
Sbjct: 722 DLLNAILQEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVKVED----MAEADDL 777

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R +FIQ+ A  ++++ 
Sbjct: 778 FTKLMGDVVEPRREFIQQNALSVENLD 804


>gi|322417549|ref|YP_004196772.1| DNA gyrase subunit B [Geobacter sp. M18]
 gi|320123936|gb|ADW11496.1| DNA gyrase, B subunit [Geobacter sp. M18]
          Length = 796

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 238/577 (41%), Positives = 351/577 (60%), Gaps = 18/577 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           +    ++Y A  I+ILEGLE VR RP MYIG T  + LHHL  E++DNA+DE +AGY + 
Sbjct: 2   SSEEQNDYGADKIQILEGLEAVRKRPAMYIGSTAAQGLHHLVYELVDNAIDEALAGYCDA 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           ++V++  +G +TV DNGRGIP + HP    +S  E++LT LHAGGKFDNS+Y++SGGLHG
Sbjct: 62  VQVTIHLDGTVTVEDNGRGIPTDMHP-TEGRSAAEVVLTVLHAGGKFDNSSYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS  L + + R   +++Q + RG+P +PL    + +  RGT+ITF PD +IF
Sbjct: 121 VGSSVVNALSTRLELEIRRNGHLYTQSYRRGVPQAPLAITGETKR-RGTKITFLPDGEIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                F    L K  +  A+L+  V+     ++         +  +F++ GG++++++  
Sbjct: 180 ET-TEFSFDILSKRLRELAFLNAGVRIKIHDER-------TEKDHDFFYEGGIRSFVEYL 231

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            +N++L++ +    K EK G     +E A+ + +    ++ S+ N I T EGGTH  G +
Sbjct: 232 NKNKNLVNPDPIYIKGEKGGV---DIEIAMQYNDSYDEKVFSFANNINTHEGGTHLIGFK 288

Query: 336 VALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            +LTR +  YA      + +   I  +DL      ++SV I +P+F GQTKTKL + + +
Sbjct: 289 ASLTRTMNNYATANNLLKNVKVAISGEDLREGLTAVISVKISQPQFEGQTKTKLGNSEVK 348

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
             VE  + +    YL +NP  A K+LE  I+ +  R   RK RE   RK A+    LPGK
Sbjct: 349 GYVETLMNEKLATYLEENPAMARKILEKSIDAARAREAARKARELTRRKGALEVGTLPGK 408

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +      ELF+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+  +Q+
Sbjct: 409 LADCQEKDPALCELFLVEGDSAGGSAKQGRDRKYQAILPLKGKILNVEKARFDKMLASQE 468

Query: 513 IMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           I  L+ ALG    +  +    LRY ++IIMTDADVDG+HI +LLLTFF+++M ++IE+ +
Sbjct: 469 IRTLISALGTSIGKEDFDIAKLRYHRIIIMTDADVDGSHILTLLLTFFFRQMMEMIERGY 528

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           L++  PPL++I +G K  Y  +E   Q  L E     
Sbjct: 529 LYIAQPPLYKIKRGRKEQYLKNEAALQSYLLEEGTED 565



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 5/93 (5%)

Query: 594 EEHK-QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652
           E  + ++IL  F +  K  + I R+KGLGEM   QL ET M    R LL+V+I   +   
Sbjct: 707 ETERQEEILSFFLESAKKGLYIQRYKGLGEMNPEQLWETTMHQENRVLLQVKIEDAV--- 763

Query: 653 KDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              ++    LMG + + R  FI++ A  + ++ 
Sbjct: 764 -AAEEIFTVLMGDQVEPRRDFIEQNALNVSNLD 795


>gi|261400946|ref|ZP_05987071.1| DNA gyrase, B subunit [Neisseria lactamica ATCC 23970]
 gi|269209189|gb|EEZ75644.1| DNA gyrase, B subunit [Neisseria lactamica ATCC 23970]
          Length = 796

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 226/571 (39%), Positives = 332/571 (58%), Gaps = 19/571 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95
            +   + Y A SI++LEGLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V DNGRG+P   HPK   +S  E+I+T LHAGGKFDN++Y+ISGGLH
Sbjct: 62  KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD + +T+ R       +F RG    PL+      +KRGT + F    + 
Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGD-SDKRGTTVRFLAGTET 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           FG+   +    L K  +  ++L+  V    + +++        + E F   GG+  ++Q 
Sbjct: 180 FGNI-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
               ++ +  +IF    EK G    +VE A+ W +     +  + N I   +GGTH + L
Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R  +TR I  Y E  +   K  +    DD+      +LSV + +P+F+ QTK KLVS + 
Sbjct: 289 RQVMTRTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEI 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
              V   +      +L +NP EA  +   +++ +  R   RK RE+ R+   +  L LPG
Sbjct: 349 GPVVNEVISQALTDFLEENPTEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSA Q R+R  QA+LPL+GKILNV  A  EK+  +Q
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468

Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALG     +    E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ 
Sbjct: 469 EVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++++  PPL++   G +  Y  DE  K + L
Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWL 559



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 592 HDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651
           +     ++ L+   ++ +  + I R+KGLGEM   QL ET MD + R LL+V +   +  
Sbjct: 706 YPVGSFEEALDILLQNVQKGMGIQRYKGLGEMNPEQLWETTMDPSVRRLLKVHVEDAI-- 763

Query: 652 LKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
                +    LMG + + R  FI+  A    ++  
Sbjct: 764 --AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796


>gi|302830013|ref|XP_002946573.1| hypothetical protein VOLCADRAFT_79115 [Volvox carteri f.
           nagariensis]
 gi|300268319|gb|EFJ52500.1| hypothetical protein VOLCADRAFT_79115 [Volvox carteri f.
           nagariensis]
          Length = 676

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 237/662 (35%), Positives = 363/662 (54%), Gaps = 34/662 (5%)

Query: 50  RILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD-GNGFLT 108
           ++LEGLEPVR RPGMYIGGT  + LHHL  EV+DN++DEV AG+A  +EV +D  +G++ 
Sbjct: 21  QVLEGLEPVRKRPGMYIGGTGSEGLHHLVWEVVDNSVDEVQAGHATRVEVQVDLSSGWVV 80

Query: 109 VVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF--DNSTYEISGGLHGVGISVVNALS 166
           V D+GRGIPV+ HP    KS LE +LT LHAGGKF  ++S Y++SGGLHGVGISVVNALS
Sbjct: 81  VTDDGRGIPVDVHP-VTGKSALETVLTVLHAGGKFGGEDSGYKVSGGLHGVGISVVNALS 139

Query: 167 DELHVTVARQNTIFSQKFSRGIPLSPLEKKE-----KVRNKRGTRITFRPDPKIFGDKAG 221
           ++L VTV R    +SQ++SRG+ L  +++ E     +  ++ GT++ F  D  IF     
Sbjct: 140 EQLTVTVWRAGVRYSQRYSRGVALEEVQRTELQPDSEEADRTGTQVCFLYDRTIFASDVS 199

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   +       A+L+      ++  ++        E + F F GGL+ ++       +
Sbjct: 200 YNPDIIATRLHELAFLNSSATMRFNATRKGQ---LDGEWQVFQFSGGLREFVGCLQSGYT 256

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
            +   I   +++             A      EI  + N+I T +GGTH   LR ALTR 
Sbjct: 257 PLHEAICVSRSDPPSGVVVHAALQWAADSFREEIRGFANSIHTADGGTHLDALRSALTRT 316

Query: 342 IKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I   A+  +  +        + +      +++V +  PEF GQTKT+L + + ++ VE  
Sbjct: 317 ITALAKKMKLIKEGDPPLSGEHIREGLGAVIAVQVPNPEFEGQTKTRLGNPEVRKIVEAT 376

Query: 400 LRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
           + +    +L  +P + + LL + +         R+ +  + RKT++ +  LPGKLADC+ 
Sbjct: 377 VAEAVGEWLEAHPADLSALLGKALTAARAADAARKARELIRRKTSLSRSMLPGKLADCTS 436

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TE+++VEGDSAGGSAKQAR+R  QAVLPL+GKILNV       +  N +I  L+ 
Sbjct: 437 EERDRTEIYLVEGDSAGGSAKQARDRRFQAVLPLKGKILNVERVAGAAMYKNAEISSLIV 496

Query: 519 ALGCRTR--------------SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           ALG  T                    + L Y K++I+TDADVDGAHI +LLLTF ++   
Sbjct: 497 ALGLGTDRAPALATRGPDVAVRDTASKALEYGKIVILTDADVDGAHIRALLLTFLFRYRP 556

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
            L    H+++  PPL+++ +G    +AH EE  ++++ E  +   G   + RFKGLGEM+
Sbjct: 557 QLFYAGHVYVAVPPLYKVERGRSLWWAHTEEELRRVVSE-NRLAPGGYSVQRFKGLGEMM 615

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
             QL +T ++   R L R+ +        +    +  LMG +   R   IQE ++ +  +
Sbjct: 616 PQQLWDTTLNPATRLLRRLTV----RDAAEADALLTSLMGAQVGPRKALIQEYSNRLQSI 671

Query: 685 GT 686
            +
Sbjct: 672 SS 673


>gi|226942154|ref|YP_002797228.1| DNA gyrase subunit B [Laribacter hongkongensis HLHK9]
 gi|226717081|gb|ACO76219.1| GyrB [Laribacter hongkongensis HLHK9]
          Length = 797

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 222/575 (38%), Positives = 343/575 (59%), Gaps = 19/575 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +   Y A SI++L+GL+ VR RPGMYIG T D   LHH+  EV+DN++DE +AG+A+ + 
Sbjct: 2   SEQEYGADSIKVLKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVLDNSIDEALAGHADTVR 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+++ +  ++V DNGRGIP + HP+   +S  E+I+T LHAGGKFDN++Y+ISGGLHGVG
Sbjct: 62  VTINPDNSVSVEDNGRGIPTDIHPE-EGRSAAEVIMTILHAGGKFDNNSYKISGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALSD L + + R   +   +F RG P++PL+   +    RGT +TF    + FG 
Sbjct: 121 VSVVNALSDWLRLKIWRDGKVHEMEFRRGEPVAPLKVTGQTT-HRGTEVTFMASTETFGT 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              +    L K  +  ++L+  V    +            ++E F F GG+  +++    
Sbjct: 180 I-EYHYDILAKRIRELSFLNNGVGITLAD-------RLHGKEENFAFSGGVAGFVEYMNR 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++++  ++F    +K+G    TVE A+ W +     +  + N I   +GGTH + LR  
Sbjct: 232 NKTVLHPKVFHTIGDKEG---MTVEVAMQWNDSYQENVQCFTNNIPQRDGGTHLTALRQV 288

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           +TR + +Y E      K  +    DD+      +LSV + +P+F+ QTK KLVS +    
Sbjct: 289 MTRTLNQYIEENDIAKKAKVETTGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPV 348

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLA 454
           V   + +    +L++NP++A  +   ++E +  R   RK RE+ R+   +  L LPGKLA
Sbjct: 349 VNEIISEALKTFLLENPVDAKTITGKIVEAARAREAARKAREITRRKGVMDGLGLPGKLA 408

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +      EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+  +Q++ 
Sbjct: 409 DCQEKDPALCELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKMIASQEVA 468

Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            L+ A+G    +  Y  + LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ H++
Sbjct: 469 TLITAMGTSIGKDDYNPDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGHIY 528

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +  PPL+++  G +  Y  D+    + L E     
Sbjct: 529 IAQPPLYKLKHGKQERYLKDDSELNQYLLELALDN 563



 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 4/93 (4%)

Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652
                   L+      +  + I R+KGLGEM   QL ET MD + R LL+V I   +   
Sbjct: 708 TVSEFGMALDWLMGEVRRGMSIQRYKGLGEMNPGQLWETTMDPSVRRLLKVRIEDAM--- 764

Query: 653 KDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
               D    LMG + + R  FI+  A    ++ 
Sbjct: 765 -AADDVFTTLMGDQVEPRRHFIESNALIARNID 796


>gi|313667526|ref|YP_004047810.1| DNA gyrase subunit B [Neisseria lactamica ST-640]
 gi|309378243|emb|CBX23128.1| unnamed protein product [Neisseria lactamica Y92-1009]
 gi|313004988|emb|CBN86416.1| DNA gyrase subunit B [Neisseria lactamica 020-06]
          Length = 796

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 225/571 (39%), Positives = 332/571 (58%), Gaps = 19/571 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95
            +   + Y A SI++LEGLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V DNGRG+P   HPK   +S  E+I+T LHAGGKFDN++Y+ISGGLH
Sbjct: 62  KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD + +T+ R       +F RG    PL+      +K+GT + F    + 
Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGD-SDKKGTTVRFLAGTET 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           FG+   +    L K  +  ++L+  V    + +++        + E F   GG+  ++Q 
Sbjct: 180 FGNI-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
               ++ +  +IF    EK G    +VE A+ W +     +  + N I   +GGTH + L
Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R  +TR I  Y E  +   K  +    DD+      +LSV + +P+F+ QTK KLVS + 
Sbjct: 289 RQVMTRTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEI 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
              V   +      +L +NP EA  +   +++ +  R   RK RE+ R+   +  L LPG
Sbjct: 349 GPVVNEVISRALTDFLEENPTEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSA Q R+R  QA+LPL+GKILNV  A  EK+  +Q
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468

Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALG     +    E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ 
Sbjct: 469 EVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++++  PPL++   G +  Y  DE  K + L
Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWL 559



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 4/95 (4%)

Query: 592 HDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651
           +     ++ L+   ++ +  + I R+KGLGEM   QL ET MD   R LL+V +   +  
Sbjct: 706 YPVGSFEEALDILLQNVQKGMGIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRVEDAI-- 763

Query: 652 LKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
                +    LMG + + R  FI+  A    ++  
Sbjct: 764 --AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796


>gi|163757528|ref|ZP_02164617.1| DNA gyrase subunit B [Hoeflea phototrophica DFL-43]
 gi|162285030|gb|EDQ35312.1| DNA gyrase subunit B [Hoeflea phototrophica DFL-43]
          Length = 811

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 241/577 (41%), Positives = 348/577 (60%), Gaps = 16/577 (2%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEV 89
                 + +    Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE 
Sbjct: 2   TDTPETDPTVEAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEA 61

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
           +AG+A+ + V+L+ +G +TV DNGRGIP + H +    S  E+I+T LHAGGKFD ++Y+
Sbjct: 62  LAGHADRVTVTLNPDGSVTVTDNGRGIPTDMH-QGEGISAAEVIMTQLHAGGKFDQNSYK 120

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  L + V R+  I   +F+ G+  +PL+      ++ GT +TF
Sbjct: 121 VSGGLHGVGVSVVNALSVWLKLVVRRKGKIHEIRFTHGVADAPLQVLGDCGDETGTEVTF 180

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F     FD   L    +  A+L+  V+   +  +    K         Y+ GGL
Sbjct: 181 MPSSETFT-MIDFDFGTLEHRLRELAFLNSGVRILLADRRHSDAKELE-----LYYEGGL 234

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328
           + +++    ++  + ++  T   EK G    TVE A+ W +   E    + N I   +GG
Sbjct: 235 EAFVRYLDRSKKPLVNDPVTLIGEKDGI---TVELAMWWNDSYHENVLCFTNNIPQRDGG 291

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  YA+++    K  +S+  DD       +LSV + +P+F+ QTK K
Sbjct: 292 THMAGFRAALTRQMVSYADVSGMTKKEKVSLTGDDCREGLTAVLSVKVPDPKFSSQTKDK 351

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           LVS + +  VEN +      +L ++P EA  L+  VIE +  R   RK RE   RK A+ 
Sbjct: 352 LVSSEVRPVVENLVNSTLSSWLEEHPTEAKTLVGKVIEAAAAREAARKARELTRRKGALD 411

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS+     +ELF+VEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  +
Sbjct: 412 IASLPGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 471

Query: 506 KIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           K+ ++Q+I  L+ ALG          + LRY K+IIMTDADVDGAHI +LLLTFF+++M 
Sbjct: 472 KMLSSQEIGTLITALGTGIGKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 531

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
            LIE+ HL++  PPL+++++G  S Y  DE+  ++ L
Sbjct: 532 VLIERGHLYIAQPPLYKVSRGKSSQYLKDEKAMEEYL 568



 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 4/88 (4%)

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           +++L+     G+  + + R+KGLGEM A QL ET +D N R+LL+V +N  +    D   
Sbjct: 727 RELLDAVFSVGRKGLALQRYKGLGEMNAEQLWETTLDPNARSLLQVRVNDAV----DADS 782

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
             ++LMG + + R +FIQ+ A  + ++ 
Sbjct: 783 LFSRLMGDEVEPRREFIQDNALSVANLD 810


>gi|161870850|ref|YP_001600023.1| DNA gyrase subunit B [Neisseria meningitidis 053442]
 gi|161596403|gb|ABX74063.1| DNA gyrase subunit B [Neisseria meningitidis 053442]
          Length = 814

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 229/612 (37%), Positives = 342/612 (55%), Gaps = 24/612 (3%)

Query: 26  SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDN 84
           +    +      +   + Y A SI++LEGLE VR RPGMYIG T D   LHH+  EV+DN
Sbjct: 9   AKSFQNPAKNMTEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDN 68

Query: 85  AMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144
           A+DE +AG+ + I V++  +  ++V DNGRG+P   HPK   +S  E+I+T LHAGGKFD
Sbjct: 69  AIDEALAGHCDKITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFD 127

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           N++Y+ISGGLHGVG+SVVNALSD + +T+ R       +F RG    PL+      +K+G
Sbjct: 128 NNSYKISGGLHGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGD-SDKKG 186

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F    + FG+   +    L K  +  ++L+  V    + +++        + E F 
Sbjct: 187 TTVRFLASTETFGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFA 238

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
             GG+  ++Q     ++ +  +IF    EK G    +VE A+ W +     +  + N I 
Sbjct: 239 LSGGVAGFVQYMNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIP 295

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH + LR  +TR I  Y E  +   K  +    DD+      +LSV + +P+F+ 
Sbjct: 296 QRDGGTHLTALRQVMTRTINNYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSS 355

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK KLVS +    V   +      +L +NP EA  +   +++ +  R   RK RE+ R+
Sbjct: 356 QTKDKLVSGEIGPVVNEVISQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRR 415

Query: 442 TA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
              +  L LPGKLADC +     +EL++VEGDSAGGSA Q R+R  QA+LPL+GKILNV 
Sbjct: 416 KGVMDGLGLPGKLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVE 475

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFF 559
            A  EK+  +Q++  L+ ALG     +    E LRY ++IIMTDADVDGAHI +LLLTFF
Sbjct: 476 KARFEKMLASQEVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFF 535

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
           Y++M +L+E+ ++++  PPL++   G +  Y  DE  K + L          I   R   
Sbjct: 536 YRQMPELVERGYIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIISDGR--- 592

Query: 620 LGEMLASQLKET 631
              +  ++L +T
Sbjct: 593 --TIEGAELADT 602



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 10/108 (9%)

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L++   G      +D +  +  L+      +  + I R+KGLGEM   QL ET MD   R
Sbjct: 717 LYKGENG------YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVR 770

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
            LL+V I   +       +    LMG + + R  FI+  A    ++  
Sbjct: 771 RLLKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 814


>gi|254465523|ref|ZP_05078934.1| DNA gyrase, B subunit [Rhodobacterales bacterium Y4I]
 gi|206686431|gb|EDZ46913.1| DNA gyrase, B subunit [Rhodobacterales bacterium Y4I]
          Length = 805

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 225/580 (38%), Positives = 333/580 (57%), Gaps = 16/580 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
             N+ A   Y A SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DN +DE +AG+
Sbjct: 2   SGNEQAPAEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGH 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ + V +  +  ++V DNGRGIPV  H +    S  E+I+T LHAGGKFD+++Y++SGG
Sbjct: 62  ADHVTVKIHADSSVSVSDNGRGIPVGIHEE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALSD L + + R       +F RG  +  LE      ++ GT + F    
Sbjct: 121 LHGVGVSVVNALSDWLELRIWRDGKEHIARFERGDTVKHLEVVGDCGDRTGTEVRFMAST 180

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
             F +   +    L K  +  A+L+  V+     ++            E Y+ GG++ ++
Sbjct: 181 DTFSNL-EYSFETLEKRLRELAFLNSGVRIILEDER-----PAEKITAELYYEGGVREFV 234

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +    +++ +         EK       VE A+ W +     +  + N I   +GGTH +
Sbjct: 235 KYLDRHKTPVMDAPVYIVGEKD---YIGVEIAMWWNDSYHETVLPFTNNIPQRDGGTHVA 291

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR I  YA+ +    K  +S   DD       +LSV + +P+F+ QTK KLVS 
Sbjct: 292 GFRGALTRTINNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 351

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           + +  VE+ + +    +  +NP +A +++  ++E +  R   RK RE   RKTA+    L
Sbjct: 352 EVRPVVESLMGEKLAEWFEENPNQAKQIVGKIVEAALAREAARKARELTRRKTAMDVNYL 411

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
            GKL DCS+     TE+F+VEGDSAGGSA+  R+R  QA+LPLRGKILNV  A  +++ +
Sbjct: 412 AGKLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRMTQAILPLRGKILNVERARFDRMLS 471

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q+I +LV ALG    R ++    LRY K++IMTDADVDGAHI +LLLTFFY++M +LIE
Sbjct: 472 SQEIGNLVMALGTGIGRDEFDISKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIE 531

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             +L++  PPL+++ +G   VY  D+      L      G
Sbjct: 532 GGYLYIAQPPLYKVARGKSEVYLKDQAALDDYLINQGVDG 571



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 4/86 (4%)

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
           +L+   + G+  + + R+KGLGEM   QL ET +D + RTLL+V ++     + +  D  
Sbjct: 723 LLQAILEEGEKGLTLQRYKGLGEMNPDQLWETTLDPDARTLLQVRVDD----MVEADDLF 778

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
            KLMG   + R +FIQ+ A  ++++ 
Sbjct: 779 TKLMGDVVEPRREFIQKNALSVENLD 804


>gi|77358986|ref|YP_338561.1| DNA gyrase subunit B [Pseudoalteromonas haloplanktis TAC125]
 gi|76873897|emb|CAI85118.1| DNA gyrase, subunit B (type II topoisomerase) [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 808

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 225/581 (38%), Positives = 350/581 (60%), Gaps = 18/581 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I V
Sbjct: 2   SENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDDIFV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +G ++V DNGRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHLDGSVSVRDNGRGIPTSIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L +T+ R+  +  Q +S G+P +PL       +  GT + F P  + F + 
Sbjct: 121 SVVNALSEKLKLTIRREGKLHEQTYSHGVPDAPLAVIGDA-DTTGTELRFWPSDQTFTNL 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V    + ++E        + + F + GG++ +++    N
Sbjct: 180 -DFHYDILAKRLRELSFLNSGVSIILNDERE------ENKSDHFKYEGGIRAFVEYLNRN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   +F     ++      VE ++ W +     I  + N I   +GGTH +G R AL
Sbjct: 233 KTPIHKGVFHFTHTRE-EDGIVVEVSMQWNDAYQENIYCFTNNIPQRDGGTHLAGFRSAL 291

Query: 339 TRGIKKYA----ELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           TR +  Y        + K   +   DD       ++SV + +P+F+ QTK KLVS + + 
Sbjct: 292 TRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKS 351

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE A+ + F  +L+++P +A  ++  +I+ S  R   RK R    RK A+    LPGKL
Sbjct: 352 AVEQAMAEKFTEFLLEHPTDAKIVVGKIIDASRAREAARKAREMTRRKGAMDLAGLPGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 412 ADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 471

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC   R +Y  E LRY ++IIMTDADVDG+HI +LLLTFFY++M +++E+ ++
Sbjct: 472 ATLITALGCGIGRDEYNPEKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGYI 531

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613
           ++  PPL+++ +G +  Y  D+    + L     +      
Sbjct: 532 YIAQPPLYKVKKGKQERYIKDDPALVEYLTTLALNNATLYT 572



 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G K+      ++    LE      K  + I R+KGLGEM  SQL ET MD + R +L
Sbjct: 711 IQRGEKTQ---PVDNFVDALEWLIAESKRGLYIQRYKGLGEMNPSQLWETTMDPDARRML 767

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V +   +            LMG + + R +FI++ A  + ++ 
Sbjct: 768 QVTVEDAV----AADQLFATLMGDQVEPRREFIEQNALRVVNLD 807


>gi|325123497|gb|ADY83020.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 822

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 226/581 (38%), Positives = 344/581 (59%), Gaps = 19/581 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85
                S +   Q+    YD+SSI++L GL+ VR RPGMYIG TD+   LHH+  EV+DNA
Sbjct: 2   SSESQSASQTEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNA 61

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AG+ + I V++  +  ++V DNGRGIP + HP+    S  E+ILT LHAGGKFD+
Sbjct: 62  IDEALAGHCDEIIVTIHEDESVSVSDNGRGIPTDIHPE-EGVSAAEVILTILHAGGKFDD 120

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +LH+ + R   +  Q++  G P  PL    +  +  GT
Sbjct: 121 NSYKVSGGLHGVGVSVVNALSSKLHLIINRAGQVHEQEYHHGDPQYPLRVIGET-DSSGT 179

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            + F P  ++   +  F+   L +  +  ++L+  V+     ++   E         + +
Sbjct: 180 TVRFWPS-ELTFSQTIFNVEILARRLRELSFLNAGVRIVLRDERINLE-------HVYDY 231

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GGL  +++   E ++ ++         + G     VE A+ W E     +  + N I  
Sbjct: 232 EGGLSEFVKYINEGKTHLNEIFHFTADTENGI---GVEVALQWNESYQENVRCFTNNIPQ 288

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTRG+ +Y E      K  +++  DD       I+SV + +P+F+ Q
Sbjct: 289 KDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQ 348

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441
           TK KLVS + +  VE A+   F  YL++NP  A  +   +I+ +  R   RK      RK
Sbjct: 349 TKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRK 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           +A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  
Sbjct: 409 SALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +K+ ++Q++  L+ ALGC   R +Y  + LRY K+IIMTDADVDG+HI +LLLTFF+
Sbjct: 469 ARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFF 528

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++M +L+E+ H+++  PPL+++ +G +  Y  D +  +  L
Sbjct: 529 RQMPELVERGHIYIAQPPLYKLKKGKQEQYIKDNDALETYL 569



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
             ++ +   +  +  + I R+KGLGEM A QL ET MD   R +L+V I+  +    +  
Sbjct: 738 FHQVWQHILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRNMLQVTIDDAI----EAD 793

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVGT 686
              + LMG   + R  FI+E A   D +  
Sbjct: 794 RMFSCLMGDDVEPRRAFIEENALNAD-IDA 822


>gi|84394122|ref|ZP_00992856.1| DNA gyrase subunit B [Vibrio splendidus 12B01]
 gi|84375268|gb|EAP92181.1| DNA gyrase subunit B [Vibrio splendidus 12B01]
          Length = 805

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 231/566 (40%), Positives = 344/566 (60%), Gaps = 17/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           SDNYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ N I V
Sbjct: 2   SDNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCNDIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDSSVSVSDDGRGIPTELHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS ++ +T+ R   I +Q +  G P +PL       +K GT I F P  + F + 
Sbjct: 121 SVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVGDT-DKTGTEIRFWPSEETFNNI 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V       +E        + + F + GG++ +++    N
Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLIDKRE------EDKMDHFEYEGGIQAFVEHLNTN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  +IF    E++     TVE A+ W +     I  + N I   +GG H +G R AL
Sbjct: 233 KTPIIQKIFHFDHERED--GITVEVAMQWNDGYQENIYCFTNNIPQRDGGAHLAGFRGAL 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  + +      K   S   DD       I+SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLAD 455
           E+ + +    +L++NP EA  +   +I+ +  R   RK      RK A+    LPGKLAD
Sbjct: 351 ESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  DE+   + 
Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMNQY 556



 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           + L    K  +  + + R+KGLGEM   QL ET MD   R +++V I   +         
Sbjct: 722 EALNWLVKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVG----ADLL 777

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
              LMG + + R  FI+E A  + ++ 
Sbjct: 778 FTTLMGDQVEPRRNFIEENALKVANLD 804


>gi|297571340|ref|YP_003697114.1| DNA topoisomerase (ATP-hydrolyzing) [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931687|gb|ADH92495.1| DNA topoisomerase (ATP-hydrolyzing) [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 701

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 243/706 (34%), Positives = 351/706 (49%), Gaps = 65/706 (9%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
               + Y A  + +LEGLE VR RPGMYIG TD + L H   E+IDNA+DE   G+A  I
Sbjct: 2   PQTKEEYTARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCAWEIIDNAVDEATEGFATSI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            ++L  +  + V D+GRGIPV+  P     S +E++ T LHAGGKF   +Y  SGGLHGV
Sbjct: 62  SITLHPDTSVEVSDDGRGIPVDEVP-GTGASGVEVVYTKLHAGGKFGGGSYSSSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIP--------------------LSPLEKKE 197
           G SVVNALS  L V V R   +    F RG P                     SPL    
Sbjct: 121 GASVVNALSQRLDVAVKRNGKVHEISFQRGEPGMFDDSGNPSPDATFKPALDESPLRITG 180

Query: 198 KV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
           KV +   GTR+ +  DP+IF   + F    L++  + KA+L   +    S  +       
Sbjct: 181 KVAKKTTGTRVRYWYDPQIFPSDSQFSYDALIERVREKAFLVPGLTIRVSDLR-----GE 235

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-----------------KKGTHR 299
            P +EEF + GG+  ++     + ++ S+   TG+                         
Sbjct: 236 EPVEEEFTYNGGVVDFVDFLASDPAVTSTMHLTGEGTFTETVQVLDKKSGHLKASDVERT 295

Query: 300 GTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-----KR 353
             V+ A+ W      I  S+ N I T +GGTH +G    L + ++   +          R
Sbjct: 296 CVVDIALRWGSGYETIEESFVNIIATPKGGTHVTGFEQGLVKVLRTAIDQKSRQLKVTAR 355

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RTVENALRDPFDHYLV 409
              I  DD++     +++V   EP+F GQTK  L +   +    + VE  L         
Sbjct: 356 DPRIEKDDILAGLSAVVAVRFPEPQFEGQTKEILGTAPIRAIVAKVVETELSAILASTKR 415

Query: 410 QNPIEATKLLEWVIERSEERLRRRKQREVNRK-TAIRKLRLPGKLADCSQNIAHGTELFI 468
               E ++LLE ++     R+  R Q+E++R+  A+    LP KLADC       +ELFI
Sbjct: 416 DQKTENSRLLEKIVAEMRARVAARTQKEISRRKNALETSSLPAKLADCRAEDVERSELFI 475

Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528
           VEGDSA G+AK ARN   QA+LP+RGKILNV  A    I  NQ++  ++Q +G  +   +
Sbjct: 476 VEGDSALGTAKLARNSEFQALLPIRGKILNVQKASPADILKNQEVSSIIQVIGAGSGRTF 535

Query: 529 REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI------ 582
             +  RY KVI MTDADVDGAHI +LLLT F++ M  L+E   ++   PPL RI      
Sbjct: 536 DLDAARYGKVIFMTDADVDGAHIRTLLLTLFFRYMRPLVEAGRVYAAVPPLHRIEVAGQG 595

Query: 583 TQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRTLL 641
            +  + +Y + +    K L + ++  K  K  I R+KGLGEM A QL ET MD   R+L 
Sbjct: 596 RRKGEYIYTYSDTQLHKELTKLERAKKSYKEPIQRYKGLGEMDADQLAETTMDPAHRSLR 655

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI--DDVG 685
           R+ +  +  +L+  +++   LMG+    R +FI + A+ I  D + 
Sbjct: 656 RISMADE-AALRYAEETFELLMGSDVAPRKEFIIDGAAHISRDQID 700


>gi|293611381|ref|ZP_06693677.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826253|gb|EFF84622.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 822

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 226/581 (38%), Positives = 344/581 (59%), Gaps = 19/581 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85
                S +   Q+    YD+SSI++L GL+ VR RPGMYIG TD+   LHH+  EV+DNA
Sbjct: 2   SSESQSASQTEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNA 61

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AG+ + I V++  +  ++V DNGRGIP + HP+    S  E+ILT LHAGGKFD+
Sbjct: 62  IDEALAGHCDEIIVTIHEDESVSVSDNGRGIPTDIHPE-EGVSAAEVILTILHAGGKFDD 120

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +LH+ + R   +  Q++  G P  PL    +  +  GT
Sbjct: 121 NSYKVSGGLHGVGVSVVNALSSKLHLIINRAGQVHEQEYHHGDPQYPLRVIGET-DSSGT 179

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            + F P  ++   +  F+   L +  +  ++L+  V+     ++   E         + +
Sbjct: 180 TVRFWPS-ELTFSQTIFNVEILARRLRELSFLNAGVRIVLRDERINLE-------HVYDY 231

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GGL  +++   E ++ ++         + G     VE A+ W E     +  + N I  
Sbjct: 232 EGGLSEFVKYINEGKTHLNEIFHFTADTENGI---GVEVALQWNESYQENVRCFTNNIPQ 288

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTRG+ +Y E      K  +++  DD       I+SV + +P+F+ Q
Sbjct: 289 KDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQ 348

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441
           TK KLVS + +  VE A+   F  YL++NP  A  +   +I+ +  R   RK      RK
Sbjct: 349 TKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRK 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           +A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  
Sbjct: 409 SALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +K+ ++Q++  L+ ALGC   R +Y  + LRY K+IIMTDADVDG+HI +LLLTFF+
Sbjct: 469 ARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFF 528

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++M +L+E+ H+++  PPL+++ +G +  Y  D +  +  L
Sbjct: 529 RQMPELVERGHIYIAQPPLYKLKKGKQEQYIKDNDALETYL 569



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
             ++ +   +  +  + I R+KGLGEM A QL ET MD   R +L+V I+  +    +  
Sbjct: 738 FHQVWQHILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRNMLQVTIDDAI----EAD 793

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVGT 686
              + LMG   + R  FI+E A   D +  
Sbjct: 794 RMFSCLMGDDVEPRRAFIEENALNAD-IDA 822


>gi|126738622|ref|ZP_01754327.1| DNA gyrase subunit B [Roseobacter sp. SK209-2-6]
 gi|126720421|gb|EBA17127.1| DNA gyrase subunit B [Roseobacter sp. SK209-2-6]
          Length = 805

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 227/580 (39%), Positives = 334/580 (57%), Gaps = 16/580 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
             N+ +   Y A SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DN +DE +AG+
Sbjct: 2   SENEQSPAEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGH 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ + V +  +  ++V DNGRGIPV+ HP+    S  E+I+T LHAGGKFD+++Y++SGG
Sbjct: 62  ADHVTVKIHADSSVSVGDNGRGIPVDIHPE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALSD L + + R       +F RG     LE      ++ GT + F    
Sbjct: 121 LHGVGVSVVNALSDWLELRIWRNGKEHVARFERGDTAKHLEVVGDCGDRTGTEVRFMAST 180

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
             F +   +    L K  +  A+L+  V+     ++            E ++ GG+K ++
Sbjct: 181 DTFSNL-EYSFETLEKRLRELAFLNSGVRIILEDER-----PAEKLTAELFYDGGVKEFV 234

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +    +++ +         EK       VE A+ W +     +  + N I   +GGTH +
Sbjct: 235 KYLDRHKTPVMEAPVYIVGEKDDI---GVEIAMWWNDSYHETVLPFTNNIPQRDGGTHVA 291

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR I  YA+ +    K  +S   DD       +LSV + +P+F+ QTK KLVS 
Sbjct: 292 GFRGALTRTINNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 351

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           + +  VE+ + +    +  +NP +A +++  ++E +  R   RK RE   RKTA+    L
Sbjct: 352 EVRPVVESLMGEKLAEWFEENPNQAKQIVGKIVEAALAREAARKARELTRRKTAMDVNFL 411

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
            GKL DCS+     TE+F+VEGDSAGGSA+  R+R  QA+LPLRGKILNV  A  +++  
Sbjct: 412 AGKLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRMTQAILPLRGKILNVERARFDRMLG 471

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q+I +LV ALG    R ++  E LRY K++IMTDADVDGAHI +LLLTFFY++M +LIE
Sbjct: 472 SQEIGNLVMALGTGIGRDEFNIEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIE 531

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             +L++  PPLF++ +G   VY  D+      L      G
Sbjct: 532 GGYLYIAQPPLFKVARGKSEVYLKDQAALDDYLINQGVDG 571



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L+   + G+  + + R+KGLGEM   QL ET +D + RTLL+V ++     + +  D 
Sbjct: 722 DLLKAILEEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVRVDD----MVEADDL 777

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R +FIQ+ A  ++++ 
Sbjct: 778 FTKLMGDVVEPRREFIQKNALSVENLD 804


>gi|187250428|ref|YP_001874910.1| DNA gyrase subunit B [Elusimicrobium minutum Pei191]
 gi|186970588|gb|ACC97573.1| DNA gyrase, B subunit [Elusimicrobium minutum Pei191]
          Length = 825

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 225/589 (38%), Positives = 335/589 (56%), Gaps = 22/589 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +    NYD+S I++LEGLE VR RP MYIG T    LHHL  EV+DN++DE++AG A  
Sbjct: 6   KEKEQKNYDSSKIQVLEGLEAVRKRPAMYIGSTGLPGLHHLVYEVVDNSVDEILAGGATK 65

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENH-----PKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           I V++  +   +V D+GRGIPV+       PK   KS LE+++T LHAGGKFD+  Y++S
Sbjct: 66  ISVTIKDDMTCSVADDGRGIPVDPMVNAKDPKLKGKSALEVVMTVLHAGGKFDSGAYKVS 125

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+S VNALS+ L V V +    + Q++ RG P   +++    +  +GT +TF+ 
Sbjct: 126 GGLHGVGVSCVNALSEYLEVVVNKDGKQYFQRYHRGKPEEKVKEIGAAKE-KGTTVTFKA 184

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           D +IFG+   F    +    +  A+L+  VK   + ++        P+   F++ GG+  
Sbjct: 185 DTEIFGE-LSFSYDTIANRLRELAFLNAGVKIILTDER-----GDEPKTHTFFYEGGISQ 238

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ + +E      E    +   + +AI + +     I S+ N I T EGGTH
Sbjct: 239 FVKYINSNKTTLHAEPIYLTKEINNNY---ISFAIQYNDSYSENIYSFVNNINTIEGGTH 295

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            SG R +LTR I +Y +       + +++  DD+      +LSV I  P+F GQTKTKL 
Sbjct: 296 LSGFRSSLTRVINEYIKDNGLLKNKEVNVTGDDMREGLTAVLSVKIPHPQFEGQTKTKLG 355

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447
           + + +  V + + D    +  +NP  A  + E  I  +  R   RK R+   RK+A+   
Sbjct: 356 NSEIEGIVRSMVGDALTTFFEENPKTAKAVCEKCIGAAVAREAARKARDLTRRKSALEGG 415

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC + +A   ELFIVEG+SAGGSAKQ R+R  QA+LPLRGK+LNV  A   KI
Sbjct: 416 GLPGKLADCQERVAERCELFIVEGNSAGGSAKQGRDRVFQAILPLRGKVLNVEKAQLVKI 475

Query: 508 RNNQQIMDLVQAL---GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
            +N++I  L  AL          +    LRY K+++M DADVDG HI +LLLTFFY+++ 
Sbjct: 476 LSNEEIRTLFTALGTGVGEGEGGFDISRLRYHKIVLMADADVDGQHITTLLLTFFYRQLR 535

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613
            LIE  H+++  PPL+++ +G    Y   EE     L +   +    ++
Sbjct: 536 PLIEAGHVYIAQPPLYKVKKGKNEQYLQTEEQLVNWLSKEGINSTSVVK 584



 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 7/108 (6%)

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PLF +  G   V+ +         +  K  G     I R+KGLGEM   QL ET MD  K
Sbjct: 724 PLFTVNTGKSDVFVYSLHEL---FKTVKDAGSSGSTIQRYKGLGEMNPEQLWETTMDPAK 780

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           R+L++VEI        D +     LMG K + R  FI+  A  + ++ 
Sbjct: 781 RSLIKVEIQD----AADAEQIFTTLMGDKVEPRRAFIESHALEVKNLD 824


>gi|160331171|ref|XP_001712293.1| gyrB [Hemiselmis andersenii]
 gi|159765740|gb|ABW97968.1| gyrB [Hemiselmis andersenii]
          Length = 688

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 255/658 (38%), Positives = 369/658 (56%), Gaps = 31/658 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NYDA+ I +LEGLEPVR RPG++IG T  K LHHL  E+IDN++DE + G+ + I +SL+
Sbjct: 46  NYDATKITVLEGLEPVRRRPGVFIGSTGTKGLHHLAYEIIDNSVDEALGGFCDDILISLN 105

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            N  LT+ D GRGIP++ HP    K+ LE ++T LHAGGKF    Y++SGGLHGVG+SVV
Sbjct: 106 DNSTLTIKDKGRGIPIDTHP-VTGKTALETVMTILHAGGKFGGGGYKVSGGLHGVGVSVV 164

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE---KVRNKRGTRITFRPDPKIFGDK 219
           NALS+ LH+   R     S +F RG  +  ++ K+     +NK GT + F+PD +IF   
Sbjct: 165 NALSEFLHINTRRLEKGCSMRFVRGKTIGEIKAKKRNFNFKNKNGTSVNFKPDFQIFSST 224

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             +D   L       A+L+  +K      ++      I     F   GG+  Y+ +  + 
Sbjct: 225 FIYDPFILGGRLNELAFLNSNLKLILQDRRKKNINESI-----FVHNGGISEYIFSLSKK 279

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
           ++ +     + + E KG     V            I S+ N I T EGGTH   L++ +T
Sbjct: 280 KTPLHK-TISIEKELKGI-SVQVALQWTTDHSQENILSFANNIRTIEGGTHLDSLKIVIT 337

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  +   T   +    ++  + +     GI+SV I EPEF GQTK+KL + D +  V+
Sbjct: 338 RTLNFFGRKTGKFKDNFRNLSGEFIREGLTGIISVKIPEPEFEGQTKSKLGNPDVRSIVD 397

Query: 398 NALRDPFDHYLV-QNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
             + D   ++   Q       +LE  IE  +     +K RE V RK+ +    LPGKLAD
Sbjct: 398 TIVSDYLKNFFETQGKDACLSILEKAIEAYQASEAAKKARELVRRKSVLEFTTLPGKLAD 457

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS    + +E+FIVEGDSAGGSAKQAR+R  QA+LPLRGKI+N+      +I  N +I  
Sbjct: 458 CSLKDPNKSEIFIVEGDSAGGSAKQARDRMFQAILPLRGKIINIEKTDETRIYKNTEIQA 517

Query: 516 LVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALG  T+ +  + + LRY ++IIMTDADVDGAHI +LLLTFFY+    LIE+  +++
Sbjct: 518 LISALGLGTKKENFDINRLRYRRIIIMTDADVDGAHIRTLLLTFFYRYQKKLIEKGLVYI 577

Query: 575 ISPPLFRITQGTKSV-----YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
             PPL++I +  K++     Y + +   +  L +       K+ + RFKGLGEM+  QL 
Sbjct: 578 ACPPLYKIEETGKNLQNFKNYCYSDAELEFSLSK----HIKKLNVQRFKGLGEMMPEQLW 633

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS--FIDDVG 685
           ET MD  KR L RVE++     ++      N LMG K   R +FIQ  A    ++++ 
Sbjct: 634 ETTMDPEKRVLKRVEVSD----IEKANKIFNVLMGDKVFARKEFIQIHADKMNLENID 687


>gi|184201079|ref|YP_001855286.1| DNA topoisomerase IV subunit B [Kocuria rhizophila DC2201]
 gi|183581309|dbj|BAG29780.1| DNA gyrase subunit B [Kocuria rhizophila DC2201]
          Length = 702

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 232/706 (32%), Positives = 345/706 (48%), Gaps = 62/706 (8%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
             +   Y+A  + +LEGLE VR RPGMYIG TD + L H   E+IDN++DE +AGY   I
Sbjct: 2   TPSRSEYNARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALAGYGQDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V L  +G + V D+GRGIP++  P+    + +E++ T LHAGGKF   +Y  SGGLHGV
Sbjct: 62  AVILHRDGSVEVHDDGRGIPIDTEPR-TGLTGVEVVFTKLHAGGKFGGGSYSASGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------------------ 199
           G SVVNALS  L V V R    +   F RG P +  +K                      
Sbjct: 121 GASVVNALSARLDVQVDRGGKTYQMSFKRGEPGTFADKGAPSPSAPFEAFTTDSHLQVVG 180

Query: 200 ---RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-- 254
              R   GTRI +  D +IF   A F    L++  +  A+L   ++   + ++ +     
Sbjct: 181 RAKRGVTGTRIRYWADDQIFTPDAKFSTEELVRRARQTAFLIPGLRITVTDERRLPGTAG 240

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTH 298
              P +E F + GG+  + +    +  +       G+                  +    
Sbjct: 241 ADGPVEEVFQYDGGISEFAEFLAPDAPVTDVWRLQGQGSFTERVPVLDGSGHAQLQDVER 300

Query: 299 RGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK---RA 354
              V+ A+ W       + S+ N I T +GGTH SG   AL + ++K  +    K     
Sbjct: 301 TCEVDVALRWGVGYDTAVRSFVNIIATPKGGTHLSGFENALLKTLRKQVDANTRKLKAGN 360

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT----VENALRDPFDHYLVQ 410
             +  DD++     +L+V + EP+F GQTK  L +   ++     VE  L          
Sbjct: 361 DKLEKDDVLAGLTAVLTVRLAEPQFEGQTKEVLGTPAVRQIVAKVVETELTKQLTSKKRD 420

Query: 411 NPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           +  +A +LLE V+   + R+  R  +E   RK A+    +P KL +C       +ELFIV
Sbjct: 421 DKAQAGQLLEKVVAEMKSRISARVHKETQRRKNALETSSMPTKLVECRSADVARSELFIV 480

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           EGDSA G+A+ ARN ++QA+LP+RGKILNV  A    +  N +   L+Q +G  +   + 
Sbjct: 481 EGDSALGTARLARNSNHQALLPIRGKILNVQKASITDMLANAECAALIQVIGAGSGRSFD 540

Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI------T 583
            +  RY KVI+MTDADVDGAHI +LLLT FY+ M  L+E   ++   PPL R+      +
Sbjct: 541 LDAARYGKVIMMTDADVDGAHIRTLLLTLFYRYMRPLVEAGRVYAAVPPLHRVQIVNPGS 600

Query: 584 QGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRTLLR 642
           +  + VY + E     +L   ++ G+  K  I R+KGLGEM A QL ET MD       R
Sbjct: 601 KANEMVYTYSERELDTLLGSLEEQGRRYKEPIQRYKGLGEMDADQLAETTMDIR----HR 656

Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI--DDVGT 686
           V     +   +  + + + LMG++   R  FI   AS +  + +  
Sbjct: 657 VLRRVRVADAEAAERAFSLLMGSQVAPRKDFIVAGASHLNQEQIDA 702


>gi|110677620|ref|YP_680627.1| DNA gyrase subunit B [Roseobacter denitrificans OCh 114]
 gi|109453736|gb|ABG29941.1| DNA gyrase, B subunit [Roseobacter denitrificans OCh 114]
          Length = 804

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 229/580 (39%), Positives = 338/580 (58%), Gaps = 17/580 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
             N    + Y A+SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DN +DE +AG+
Sbjct: 2   SENDQTPEEYGANSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGH 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ + V +  +  ++V DNGRGIPV  H +    S  E+I+T LHAGGKFD+++Y++SGG
Sbjct: 62  ADAVTVKIHADSSVSVSDNGRGIPVGIHEE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALSD L + + R+      +F  G     LE      ++ GT + F    
Sbjct: 121 LHGVGVSVVNALSDWLELRIWREGKEHVARFEGGFTTRHLEVVGDT-DRTGTEVRFMAST 179

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           + F +   +    L K  +  A+L+  V+     ++   E      + + ++ GG+K ++
Sbjct: 180 ETFSNL-DYSFETLEKRLRELAFLNSGVRIILIDERPAEE-----LRSDLFYEGGVKEFV 233

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHES 332
           +    ++S +  E      EK       VE A+ W +   E    + N I   +GGTH +
Sbjct: 234 KYLDRSKSSVMPEPIFITGEKDDI---GVEVAMWWNDSYHENVLPFTNNIPQRDGGTHMA 290

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR I  YA+ +    K  +S   DD       +LSV + +P+F+ QTK KLVS 
Sbjct: 291 GFRGALTRTINNYAQSSGIARKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 350

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           + +  VE  + +    +  +NP EA  ++  +IE +  R   RK R+   RKTA+    L
Sbjct: 351 EVRPAVEGLVNEKLAEWFEENPAEAKIVVGKIIEAAHAREAARKARDLTRRKTAMDVNFL 410

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
            GKL DCS+     TE+F+VEGDSAGGSA+  R+R  QA+LPL+GKILNV  A  +++  
Sbjct: 411 AGKLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLG 470

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q+I +LV ALG    R ++  + LRY K++IMTDADVDGAHI +LLLTFFY++M  LIE
Sbjct: 471 SQEIGNLVMALGTGIGRDEFNIDKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPQLIE 530

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           Q HL++  PPL+++++G   VY  DE   ++ L +    G
Sbjct: 531 QGHLYIAQPPLYKVSRGKSEVYLKDEAAMEEYLIQQGIDG 570



 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L    + G+  + + R+KGLGEM   QL ET +D + RTLL+V+++     + +  D 
Sbjct: 721 DLLNAILQEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVKVDD----MAEADDL 776

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R +FIQ+ A  ++++ 
Sbjct: 777 FTKLMGDVVEPRREFIQQNALSVENLD 803


>gi|124267743|ref|YP_001021747.1| DNA topoisomerase IV subunit B [Methylibium petroleiphilum PM1]
 gi|124260518|gb|ABM95512.1| DNA topoisomerase IV subunit B [Methylibium petroleiphilum PM1]
          Length = 659

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 254/671 (37%), Positives = 360/671 (53%), Gaps = 39/671 (5%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
               S+   Y  SSIR+L+GLEPV+ RPGMY   T      H+  EVIDNA DE +AG+ 
Sbjct: 2   ATKSSSPGRYGESSIRVLKGLEPVKQRPGMY---TRTDNPLHIVQEVIDNAADEALAGHG 58

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151
             I V+L  +G ++V D+GRGIP   HP+      +EI+ T LHAGGKFD      Y  S
Sbjct: 59  QRIAVTLHADGSVSVDDDGRGIPFGLHPE-EQVPVVEIVFTRLHAGGKFDKGAGGAYSFS 117

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL--EKKEKVRNKRGTRITF 209
           GGLHGVG+SV NALS  L V V R+  + +  FS G  + P+   K      ++GT +  
Sbjct: 118 GGLHGVGVSVTNALSTRLQVEVFREGKVAALAFSGGDVIEPVASRKAGAADRRQGTSVRV 177

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PDPK F   A      L+ + +SKA L   V    + +K         E + + + GGL
Sbjct: 178 WPDPKYFES-AELPRNELVHLLRSKAVLMPGVSVTLTHEKS-------GEVQTWRYEGGL 229

Query: 270 KTYLQTKLENRSLIS---SEIFTGKTEKKGTHRGT-VEWAIAWCEENP-EITSYCNTILT 324
           + YL   L+   +I       +  + E +    G    W +A+ E+      SY N I T
Sbjct: 230 RDYLMQTLQADPVIPLFEGAHYAEEGETENFAEGEGAAWCVAFTEDGQAVRESYVNLIPT 289

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQT 383
             GGTHESGL+  L + +K + EL     + + ++ DD+   A  +LS  + +P+F GQT
Sbjct: 290 VAGGTHESGLKDGLFQAVKGFIELHALCPKGVKLMPDDVFSRASFVLSAKVLDPQFQGQT 349

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443
           K +L S DA R V   ++  F+ +L Q+     KL E VI +++ R R  ++ E  + + 
Sbjct: 350 KERLNSRDALRLVSTYVKPAFELWLSQHVEHGRKLAELVIRQAQARQRAGQKVEKRKGSG 409

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +  L  PGKL DC        ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN     
Sbjct: 410 VAVL--PGKLTDCESRDLALNELFLVEGDSAGGSAKMGRDKETQAILPLRGKVLNSWEVE 467

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFY 560
            +++  N +I D+  A+G        E D   LRY K+ I++DADVDG+HI  LLLT F+
Sbjct: 468 RDRLFANNEIHDISVAIGVDPHGAADEPDLSGLRYGKICILSDADVDGSHIQVLLLTLFF 527

Query: 561 QEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKI 612
           +    LIE+ H+ +  PPLFR+    +G K    +YA DE     IL++ +K G  +   
Sbjct: 528 RHFPKLIERGHICIAKPPLFRVDAPARGKKPAAKLYALDEGELTAILDKLRKEGARETSW 587

Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERF 671
            ISRFKGLGEM A QL +T ++ + R LL V     L     T+ S NKLMG  +A  R 
Sbjct: 588 TISRFKGLGEMNAEQLWDTTLNPDTRRLLPVS--WGLLDFGQTEGSFNKLMGKGEAASRR 645

Query: 672 KFIQERASFID 682
           + ++     ++
Sbjct: 646 ELMELHGDAVE 656


>gi|170691864|ref|ZP_02883028.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia graminis C4D1M]
 gi|170143148|gb|EDT11312.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia graminis C4D1M]
          Length = 661

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 240/674 (35%), Positives = 358/674 (53%), Gaps = 42/674 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +  +  Y  +SI++L+GLEPV+ RPGMY   T  +   H+  EVIDNA DE + GY 
Sbjct: 1   MSTKKPNAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYG 57

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151
             I V+L  +  ++V D+GRGIP   HP+      +EI+ T LHAGGKFD      Y  S
Sbjct: 58  RQITVTLHADHSVSVEDDGRGIPFGLHPE-EGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITF 209
           GGLHGVG+SV NALS  L VTV R   + +  F+ G    PLE +   R   K GTR+T 
Sbjct: 117 GGLHGVGVSVTNALSTRLDVTVWRDGKVAALSFANGDVAKPLEVRAAARGEKKSGTRVTA 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
             +PK F          L ++ +SKA L   V+     ++         E++ + +  GL
Sbjct: 177 WANPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVTLVNER-------TGEQQSWKYEDGL 228

Query: 270 KTYLQTKLENRSLISSEIFTGKT-------EKKGTHRGTVEWAIAWCEENP-EITSYCNT 321
           + YL   +    L+       +        E+         W +AW EE P    SY N 
Sbjct: 229 RGYLLEGMSGSDLLIPLFEGERYAENSRANEETFAEGEGAAWVVAWSEEGPLTRESYVNL 288

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFA 380
           I T  GGTHESGLR  L + +K + EL     + + ++++D+      +LS  + +P+F 
Sbjct: 289 IPTPAGGTHESGLREGLFQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQ 348

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQ K +L S DA + V +  R   + +L Q+     KL + VI++++ R R  ++ E  +
Sbjct: 349 GQIKERLNSRDAVKLVSSFARPALELWLNQHVEHGKKLADLVIKQAQARTRAGQKVEKRK 408

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
            + +  L  PGKL DC        ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN  
Sbjct: 409 SSGVAVL--PGKLTDCESTEIGRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTW 466

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLLT 557
               +++  N ++ D+  A+G    S   +    +LRY K+ I++DADVDG+HI  LLLT
Sbjct: 467 ETERDRLFANNEVHDISVAIGVDPHSPDDKIDLSNLRYGKICILSDADVDGSHIQVLLLT 526

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--K 609
            F++    LIE+ H+ +  PPLFR+    +G K    +YA D+   + IL++ +K G   
Sbjct: 527 LFFKHFPQLIERGHVCIARPPLFRVDAPARGKKPAQKLYALDQGELEAILDKLRKDGVRD 586

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KAD 668
            +  ISRFKGLGEM A QL +T M+ + R L  V + +           +  LMG  +A 
Sbjct: 587 TQWSISRFKGLGEMSAEQLWDTTMNPDTRRLTPVALGELDYDATVA--RMTMLMGKGEAA 644

Query: 669 ERFKFIQERASFID 682
            R  +++E+ + ++
Sbjct: 645 SRRNWLEEKGNEVE 658


>gi|182412481|ref|YP_001817547.1| DNA gyrase, B subunit [Opitutus terrae PB90-1]
 gi|177839695|gb|ACB73947.1| DNA gyrase, B subunit [Opitutus terrae PB90-1]
          Length = 861

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 219/596 (36%), Positives = 331/596 (55%), Gaps = 22/596 (3%)

Query: 26  SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNA 85
           + E        N + ++ YDAS I+ LEGLE VR RP MYIG T+E+ LHH   EV+DN+
Sbjct: 2   ADESAAEHTAKNLAGAEAYDASKIQKLEGLEGVRKRPDMYIGDTNERGLHHCVFEVVDNS 61

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AG+A+LI V++  +G  ++ D+GRGIPV+ HP       LE++LT LHAGGKF  
Sbjct: 62  VDEALAGFASLIVVTIHLDGSCSIEDDGRGIPVDMHP-VYKIPALELVLTNLHAGGKFGK 120

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y++SGGLHGVG   VNA+S+     V R   ++  +F +GI    ++     +   GT
Sbjct: 121 GAYQVSGGLHGVGAKCVNAVSEWFEAEVRRGGKVYQMRFEQGITTQKMQVIGDTKK-TGT 179

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           +ITF+PDP+IF     F    L K  +  A+L+  V    + ++         + + FYF
Sbjct: 180 KITFKPDPEIFKTTREFQYEILSKRLRELAFLNPGVHIELADERSQ-------KGDRFYF 232

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGT-----HRGTVEWAIAWCEENPEI-TSYC 319
             G+  +++   +N++++  +  T                 V+ ++ + +   +   +Y 
Sbjct: 233 RDGITEFVRYLNQNKNVVHDKPITFSDSVPNETNAALPNIVVDVSMQYNDSYNDQVFAYA 292

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N+I   EGGTH SG R ALTR +  +A       ++  SI  DD+    V ++SV + EP
Sbjct: 293 NSIYNIEGGTHLSGFRTALTRVVNNFARANNLLKEKDPSITGDDVREGLVAVISVKVPEP 352

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
            F GQTKTKL + +    V+  + +    Y   N   A ++++  +  +  R   RK RE
Sbjct: 353 RFEGQTKTKLSNGEIDGIVQRIVGEKLRFYFEANTNIAKRIIDKTLNAARAREAARKARE 412

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
             RK A+    LPGKLADCS+      EL+IVEGDSAGGSAKQ R+R  QA+LPLRGK++
Sbjct: 413 TVRKGALSGGGLPGKLADCSERDPALCELYIVEGDSAGGSAKQGRDRRYQAILPLRGKVI 472

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQ-----YREEDLRYEKVIIMTDADVDGAHIA 552
           NV  A  +K+  N++I  L+ A G           +  +  RY KVIIMTDADVDG+HI 
Sbjct: 473 NVEKARLDKVLANEEIRTLITAFGTGIGDHEGDGAFDGDKARYHKVIIMTDADVDGSHIR 532

Query: 553 SLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +LLLTF Y++M  L ++  +++  PPL++I +  +  Y  +++   +IL E     
Sbjct: 533 TLLLTFLYRQMRGLFDRGFVYIAQPPLYKIKRKKREQYIDNDDQLNRILLELGSED 588



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           +I+ E + +G+  + I R+KGLGEM   QL ET MD  KR LL+V IN            
Sbjct: 778 EIVTEIRANGRKGLSIQRYKGLGEMNPKQLFETTMDPEKRRLLKVSIND----AAKADAL 833

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
              LMG +   R +FI++ A  +  + 
Sbjct: 834 FTLLMGDEVPPRRQFIEDNALNVQYLD 860


>gi|83855146|ref|ZP_00948676.1| DNA gyrase subunit B [Sulfitobacter sp. NAS-14.1]
 gi|83941669|ref|ZP_00954131.1| DNA gyrase subunit B [Sulfitobacter sp. EE-36]
 gi|83842989|gb|EAP82156.1| DNA gyrase subunit B [Sulfitobacter sp. NAS-14.1]
 gi|83847489|gb|EAP85364.1| DNA gyrase subunit B [Sulfitobacter sp. EE-36]
          Length = 804

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 225/573 (39%), Positives = 334/573 (58%), Gaps = 17/573 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + Y A SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DN +DE +AG+A+ + V+
Sbjct: 9   EEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGHADAVNVT 68

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  ++V DNGRGIPV  H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+S
Sbjct: 69  IHDDSSVSVSDNGRGIPVGIHQE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGGLHGVGVS 127

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALSD L + + R+      +F  G     LE       + GT + F    + F +  
Sbjct: 128 VVNALSDWLELRIWREGKEHVARFEGGFTTKHLEVVGPT-ERTGTEVRFMASTETFSNL- 185

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +    L K  +  A+L+  V+   + ++        P + E ++ GG+K +++    ++
Sbjct: 186 DYSFETLEKRLRELAFLNSGVRIILTDER-----PAEPLRTELFYEGGVKEFVKYLDRSK 240

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
           + +  E      EK       VE A+ W +   E    + N I   +GGTH +G R ALT
Sbjct: 241 TSVMPEPIFISGEKDDI---GVEVAMWWNDSYHENVLPFTNNIPQRDGGTHTAGFRGALT 297

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA+ +    K  +S   DD       +LSV + +P+F+ QTK KLVS + +  VE
Sbjct: 298 RTINNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVE 357

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
             + +    +  +NP  A  ++  +IE +  R   RK R+   RKTA+    L GKL DC
Sbjct: 358 GLVNEKLAEWFEENPQIAKIVVGKIIEAAHAREAARKARDLTRRKTAMDVNFLAGKLKDC 417

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S+     TE+F+VEGDSAGGSA+  R+R  QA+LPL+GKILNV  A  +++  +Q+I +L
Sbjct: 418 SEKDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNL 477

Query: 517 VQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           V ALG    R ++  + LRY K++IMTDADVDGAHI +LLLTFFY++M  LIE  HL++ 
Sbjct: 478 VMALGTGIGRDEFNIDKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPQLIENGHLYIA 537

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
            PPL+++++G   VY  D+   +  L +    G
Sbjct: 538 QPPLYKVSRGKSEVYLKDQAAMEDYLIQQGIEG 570



 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +LE     G+  + + R+KGLGEM   QL ET +D + RTLL+V++      + +  D 
Sbjct: 721 DLLEAILAEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVKV----ADMAEADDL 776

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R +FIQ+ A  ++++ 
Sbjct: 777 FTKLMGDVVEPRREFIQQNALSVENLD 803


>gi|209883685|ref|YP_002287542.1| DNA gyrase, B subunit [Oligotropha carboxidovorans OM5]
 gi|209871881|gb|ACI91677.1| DNA gyrase, B subunit [Oligotropha carboxidovorans OM5]
          Length = 812

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 246/583 (42%), Positives = 340/583 (58%), Gaps = 14/583 (2%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85
            E    P      A+  Y A SIR+L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA
Sbjct: 2   SEPARLPTPDLTVAAAEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNA 61

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AGYA  +EV L+ +G +TV D+GRGIP + H K    S  E+I+T LHAGGKFD 
Sbjct: 62  IDEALAGYATRVEVILNPDGSVTVRDDGRGIPTDIH-KGEGISAAEVIMTQLHAGGKFDQ 120

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +L + + R       +F  G  ++PL        KRGT
Sbjct: 121 NSYKVSGGLHGVGVSVVNALSSKLALRIWRGGKEHYIEFQHGDAVAPLAVVGDAGGKRGT 180

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            +TF   P+ F     +D   L    +  A+L+  V    S  +   E+      EE ++
Sbjct: 181 EVTFHASPETFT-HIEYDFDTLEHRLRELAFLNSGVNILLSDMRHAVERR-----EELHY 234

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILT 324
            GG++ +++    N+  +  +    + E+ G    TVE A+ W +   E    + N I  
Sbjct: 235 EGGVEAFVKFLDRNKKAVVDKPIVMRAEQHGI---TVEVAMWWNDSYHENVLCFTNNIPQ 291

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
            +GGTH +G R ALTR I  YAE    K  I++  DD       +LSV + +P+F+ QTK
Sbjct: 292 RDGGTHLAGFRGALTRQITGYAEGMAKKEKIALTGDDCREGLTAVLSVKVPDPKFSSQTK 351

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
            KLVS + +  VE+ +      +L ++P EA  ++  VIE +  R   RK R+   RK A
Sbjct: 352 DKLVSSEVRPVVESIINTALSAWLEEHPTEARTIVGKVIEAAAAREAARKARDLTRRKGA 411

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR  QAVLPLRGKILNV  A 
Sbjct: 412 LDIASLPGKLADCQERDPAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERAR 471

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
            +K+ +++QI  L+ ALG        +   LRY K+I+MTDADVDGAHI +LLLTFF+++
Sbjct: 472 FDKMLSSEQIGTLITALGTGIGRDDFDLSKLRYHKIIVMTDADVDGAHIRTLLLTFFFRQ 531

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605
           M  LIE  HL++  PPL+++T+G    Y  DE   +  L E  
Sbjct: 532 MPQLIEAGHLYIAQPPLYKVTRGKSEQYLKDERALEDYLIETG 574



 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 5/87 (5%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            + E   + G+  +   R+KGLGEM   QL ET +D N R+LL+V+I      +    D 
Sbjct: 730 SLFEAVTEAGRKGVAYQRYKGLGEMNPEQLWETTLDTNARSLLQVKI----REVDAADDI 785

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R +FIQ+ +    +V 
Sbjct: 786 FTKLMGDIVEPRREFIQDNSLDA-NVD 811


>gi|121604106|ref|YP_981435.1| DNA topoisomerase IV subunit B [Polaromonas naphthalenivorans CJ2]
 gi|120593075|gb|ABM36514.1| DNA topoisomerase IV subunit B [Polaromonas naphthalenivorans CJ2]
          Length = 659

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 243/671 (36%), Positives = 349/671 (52%), Gaps = 38/671 (5%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A  N +AS  Y  SSIR+L+GLEPV+ RPGMY   T      H+  EV+DN+ DE +AG+
Sbjct: 2   AEKNITASPAYSESSIRVLKGLEPVKQRPGMY---TRTDNPLHIIQEVLDNSADEALAGH 58

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA---GGKFDNSTYEI 150
              I+V+L  +G +++ D+GRGIP   HP+      +E++ T LHA     K     Y  
Sbjct: 59  GKKIKVTLHTDGSVSIEDDGRGIPFGLHPE-EKAPVVELVFTRLHAGGKFDKGKGGAYSF 117

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--LEKKEKVRNKRGTRIT 208
           SGGLHGVG+SV NALS  L VT  R+  + S  FS G  + P  L        K GT + 
Sbjct: 118 SGGLHGVGVSVTNALSTRLEVTSYREGKVASLAFSGGDVIEPLVLRPNGNGDRKSGTTVR 177

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
             PD K F        A L  + +SKA L   V    + +K         E + + + GG
Sbjct: 178 AWPDAKYFES-PALPMAELTHLLRSKAVLMPGVTVTLTNEK-------TKEVQTWLYKGG 229

Query: 269 LKTYLQTKLENR---SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILT 324
           L+ YL   L       +   E F     +         W +A+ E+      SY N I T
Sbjct: 230 LRDYLMQTLTADPVIPMFEEEGFADAAHETFAEGEGASWCVAFTEDGQPVRESYVNLIPT 289

Query: 325 DEGGTHESGLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
             GGTHESGLR  L   +K + E  +   + + ++ +D+   A  +LS  + +P+F GQ 
Sbjct: 290 SAGGTHESGLRDGLFTAVKSFIELHSLLPKGVKLLPEDVFARASYVLSAKVLDPQFQGQI 349

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443
           K +L S DA R V + +R   + +L Q+     KL E  I+ ++ R +  ++ E  + + 
Sbjct: 350 KERLNSRDAVRLVSSFVRPALELWLNQHVDYGKKLAELAIKAAQSRQKAGQKVEKRKGSG 409

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +  L  PGKL DC        E+F+VEGDSAGGSAK  R++ NQAVLPLRGK+LN     
Sbjct: 410 VAVL--PGKLTDCESKDLANNEVFLVEGDSAGGSAKMGRDKENQAVLPLRGKVLNTWEVD 467

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFY 560
            +++  N +I D+  A+G          D   LRY KV I++DADVDG+HI  LLLT F+
Sbjct: 468 RDRLFANTEIHDISVAIGVDPHGPNDTPDLSALRYGKVCILSDADVDGSHIQVLLLTLFF 527

Query: 561 QEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKI 612
           +    LIE  H+++  PPL+R+    +G K    VYA DE     IL++ +K G  +   
Sbjct: 528 RHFPKLIETGHVYVARPPLYRVDAPARGKKPASKVYALDEGELTAILDKLRKDGVRENAW 587

Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERF 671
            ISRFKGLGEM A QL +T ++ + R L+ V++         T+  I KLMG  +A  R 
Sbjct: 588 SISRFKGLGEMSAEQLWDTTLNPDTRRLMPVQL--GNQDFGQTESLITKLMGKGEAAARR 645

Query: 672 KFIQERASFID 682
           + ++     ++
Sbjct: 646 ELMELHGDAVE 656


>gi|197116406|ref|YP_002136833.1| DNA gyrase subunit B [Geobacter bemidjiensis Bem]
 gi|197085766|gb|ACH37037.1| DNA gyrase, B subunit [Geobacter bemidjiensis Bem]
          Length = 796

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 239/576 (41%), Positives = 349/576 (60%), Gaps = 18/576 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           N     +Y A  I+ILEGLE VR RP MYIG T  + LHHL  E++DNA+DE +AGY + 
Sbjct: 2   NSEEQGDYGADKIQILEGLEAVRKRPAMYIGSTAAQGLHHLVYELVDNAIDEALAGYCDA 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           ++V +  +G +TV DNGRGIP + HP    +S  E++LT LHAGGKFDN++Y++SGGLHG
Sbjct: 62  VQVIIHLDGSVTVEDNGRGIPTDMHP-TEGRSAAEVVLTVLHAGGKFDNTSYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS  L + + R   + +Q + +G+P +PLE   + +  RGT+ITF PD +IF
Sbjct: 121 VGSSVVNALSTRLDLEIRRNGHVHTQTYRKGVPQAPLEITGETKR-RGTKITFFPDGEIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                F    L K  +  A+L+  V+     ++         +  +F++ GG++++++  
Sbjct: 180 ET-TEFSFDVLSKRLRELAFLNAGVRIKIHDER-------TEKDHDFFYEGGIRSFVEYL 231

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            +N++L++ E    + EK G     +E A+ + +    ++ S+ N I T EGGTH  G +
Sbjct: 232 NKNKNLVNPEPIYIRGEKSGV---DIEIAMQYNDSYDEKVFSFANNINTHEGGTHLVGFK 288

Query: 336 VALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            +LTR +  YA      + +   I  DDL      ++SV I +P+F GQTKTKL + + +
Sbjct: 289 ASLTRTMNTYATANNLLKNVKVAISGDDLREGLTAVISVKISQPQFEGQTKTKLGNSEVK 348

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
             VE  + +    YL +NP  A K+LE  I+ +  R   RK RE   RK A+    LPGK
Sbjct: 349 GYVETLMNEKLATYLEENPAMARKILEKSIDAARAREAARKARELTRRKGALEVGTLPGK 408

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +      ELF+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+  +Q+
Sbjct: 409 LADCQEKDPALCELFLVEGDSAGGSAKQGRDRKYQAILPLKGKILNVEKARFDKMLASQE 468

Query: 513 IMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           I  L+ ALG    +  +    LRY ++I+MTDADVDG+HI +LLLTFF+++M +LIE+ +
Sbjct: 469 IRTLISALGTSIGKEDFDMAKLRYHRIIVMTDADVDGSHILTLLLTFFFRQMLELIERGY 528

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607
           L++  PPL++I +G K  Y  +E   Q  L E    
Sbjct: 529 LYIAQPPLYKIKRGRKEQYLKNEAALQAYLLEEGTE 564



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 4/88 (4%)

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           + IL  F +  K  + I R+KGLGEM   QL ET M    R LL+V+I   +      ++
Sbjct: 712 EDILSFFMESAKKGLYIQRYKGLGEMNPEQLWETTMHQENRVLLQVKIEDAV----AAEE 767

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
               LMG + + R  FI++ A  + ++ 
Sbjct: 768 IFTVLMGDQVEPRRDFIEQNALNVSNLD 795


>gi|190889652|ref|YP_001976194.1| DNA gyrase protein, B subunit [Rhizobium etli CIAT 652]
 gi|190694931|gb|ACE89016.1| DNA gyrase protein, B subunit [Rhizobium etli CIAT 652]
 gi|327191183|gb|EGE58226.1| DNA gyrase protein, B subunit [Rhizobium etli CNPAF512]
          Length = 811

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 236/577 (40%), Positives = 342/577 (59%), Gaps = 16/577 (2%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEV 89
              +      S  Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE 
Sbjct: 2   SDTSATENGVSTEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEA 61

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
           +AG+A+++ VSL+ +G +TV DNGRGIP + H      S  E+I+T LHAGGKFD ++Y+
Sbjct: 62  LAGHADIVTVSLNPDGSVTVTDNGRGIPTDIHS-GEGVSAAEVIMTQLHAGGKFDQNSYK 120

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  L + + R   I    F+ G+  +PL+      +  GT ++F
Sbjct: 121 VSGGLHGVGVSVVNALSVWLKLKIRRHGKIHEMSFTHGVADAPLKVTGDAPDATGTEVSF 180

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F     FD   L    +  A+L+  V+   S  +    K     +EE  + GGL
Sbjct: 181 MPSSETFT-MTEFDYGTLEHRLRELAFLNSGVRILLSDKRHSDIK-----QEEMRYDGGL 234

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328
           + ++      +  +  +    + EK G    TVE A+ W +   E    + N I   +GG
Sbjct: 235 EAFVAYLDRAKKPLVDKPVAIRGEKDGI---TVEVAMWWNDSYHENVLCFTNNIPQRDGG 291

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  YA+ +    K  +++  +D       +LSV + +P+F+ QTK K
Sbjct: 292 THMAGFRAALTRQVVSYADNSGITKKEKVTLQGEDCREGLTAVLSVKVPDPKFSSQTKDK 351

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           LVS + +  VE+ + +    +  ++P EA  L+  V+E +  R   RK RE   RK A+ 
Sbjct: 352 LVSSEVRPVVESLVNEALSTWFEEHPSEAKILVGKVVEAAAAREAARKARELTRRKGALD 411

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS+     +E+F+VEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  +
Sbjct: 412 IASLPGKLADCSERDPAKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 471

Query: 506 KIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           K+ ++Q+I  L+ ALG          E LRY K+IIMTDADVDGAHI +LLLTFF+++M 
Sbjct: 472 KMLSSQEIGTLITALGTGIGKDEFNAEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 531

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +LIE+ HL++  PPL+++ +G    Y  DE+  ++ L
Sbjct: 532 ELIERGHLYIAQPPLYKVARGKSVQYLKDEKALEEYL 568



 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 4/88 (4%)

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           + +L+     G+  + + R+KGLGEM A QL ET +D N R+LL+V++        D   
Sbjct: 727 RALLDAIFASGRKGLTMQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVADAT----DADG 782

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
              +LMG + + R +FIQ+ A  + ++ 
Sbjct: 783 LFARLMGDEVEPRREFIQDNALSVANLD 810


>gi|26986758|ref|NP_742183.1| DNA gyrase subunit B [Pseudomonas putida KT2440]
 gi|148545263|ref|YP_001265365.1| DNA gyrase subunit B [Pseudomonas putida F1]
 gi|24981349|gb|AAN65647.1|AE016191_4 DNA gyrase, subunit B [Pseudomonas putida KT2440]
 gi|148509321|gb|ABQ76181.1| DNA gyrase subunit B [Pseudomonas putida F1]
 gi|313496421|gb|ADR57787.1| GyrB [Pseudomonas putida BIRD-1]
          Length = 806

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 225/569 (39%), Positives = 346/569 (60%), Gaps = 18/569 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S +  YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I
Sbjct: 2   SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V +  +  ++V DNGRGIPV+ H K    S  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  TVIIHPDESISVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS++L +TV R   I+ Q +  G+P +P+          GT I F+P  + F 
Sbjct: 121 GVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGD-SETTGTHIHFKPSAETFK 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++   
Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGILLKDERSGKE-------EFFKYEGGLRAFVEYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++S++F    ++       VE A+ W +     +  + N I   +GGTH  G R 
Sbjct: 232 TNKTPVNSQVFHFNVQRDD--GVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 289

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           +LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 290 SLTRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 349

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPGKL
Sbjct: 350 AVEQEMNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 409

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 410 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 469

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF++++ +L+E+ ++
Sbjct: 470 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGYI 529

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++  PPL+++ +G +  Y  D+E  ++ +
Sbjct: 530 YIAQPPLYKVKRGKQEQYIKDDEAMEEYM 558



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             ++ L+        +  I R+KGLGEM   QL ET MD   R +L+V I   +      
Sbjct: 720 EFKEGLDWLMNETTKRHTIQRYKGLGEMNPDQLWETTMDPTVRRMLKVTIEDAI----AA 775

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
               N LMG   + R  FI+  A  + ++ 
Sbjct: 776 DQIFNTLMGDAVEPRRDFIESNALSVSNLD 805


>gi|261391746|emb|CAX49196.1| DNA gyrase subunit B [Neisseria meningitidis 8013]
          Length = 796

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 229/601 (38%), Positives = 339/601 (56%), Gaps = 24/601 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95
            +   + Y A SI++LEGLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V DNGRG+P   HPK   +S  E+I+T LHAGGKFDN++Y+ISGGLH
Sbjct: 62  KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD + +T+ R       +F RG    PL+      +K+GT + F    + 
Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGD-SDKKGTTVRFLASAET 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           FG+   +    L K  +  ++L+  V    + +++        + E F   GG+  ++Q 
Sbjct: 180 FGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
               ++ +  +IF    EK G    +VE A+ W +     +  + N I   +GGTH + L
Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R  +TR I  Y E  +   K  +    DD+      +LSV + +P+F+ QTK KLVS + 
Sbjct: 289 RQVMTRTINNYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEI 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
              V   +      +L +NP EA  +   +++ +  R   RK RE+ R+   +  L LPG
Sbjct: 349 GPVVNEVINQALTDFLEENPTEAKIITSKIVDAARAREAARKAREITRRKGVMDGLGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSA Q R+R  QA+LPL+GKILNV  A  EK+  +Q
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468

Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALG     +    E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ 
Sbjct: 469 EVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPL++   G +  Y  DE  K + L          +  SR      +   +L  
Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVSDSR-----TIEGEELAN 583

Query: 631 T 631
           T
Sbjct: 584 T 584



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%)

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           ++ +G      +D +  +  L+      +  + I R+KGLGEM   QL ET MD   R L
Sbjct: 698 KLYKGDNE---YDIDSFEGALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRL 754

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           L+V I   +       +    LMG + + R  FI+  A    ++  
Sbjct: 755 LKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796


>gi|212632928|ref|YP_002309453.1| DNA gyrase subunit B [Shewanella piezotolerans WP3]
 gi|212554412|gb|ACJ26866.1| DNA gyrase, B subunit [Shewanella piezotolerans WP3]
          Length = 805

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 224/568 (39%), Positives = 347/568 (61%), Gaps = 18/568 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I 
Sbjct: 2   SENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDIT 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           +++  +G ++V D+GRGIPVE HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG
Sbjct: 62  ITIHADGSVSVTDDGRGIPVEIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS +L +T+ R   ++ Q ++ G P  P++   +  +  GT I F P  + F D
Sbjct: 121 VSVVNALSHKLQLTIRRDGKVYEQFYTMGEPNEPIKPVGEATS-TGTVIRFWPSEETFSD 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      +++  +       E F + GG+  ++     
Sbjct: 180 VL-FHFDILAKRVRELSFLNSGVGIRLVDERDNRD-------EFFKYEGGISAFVDYLNV 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++ E+F    E++     TVE A+ W +     I  + N I   +GGTH +G R A
Sbjct: 232 NKTPVNKEVFHFIQERED--GITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRGA 289

Query: 338 LTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K       DD       ++SV + +P+F+ QTK KLVS + +  
Sbjct: 290 LTRNLNNYMEREGFNKKGKTGATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSA 349

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454
           VE  + +    YL+++P EA  ++  +I+ +  R   RK R    RK A+    LPGKLA
Sbjct: 350 VEQTMGEQLGDYLMEHPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLA 409

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++ 
Sbjct: 410 DCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 469

Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            L+ ALGC   R +Y  +  RY  ++IMTDADVDG+HI +LLLTFF+++M +LIE+ +++
Sbjct: 470 TLITALGCGIGRDEYDPDKTRYHNIVIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIY 529

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +  PPL+++ +G +  Y  D+    + L
Sbjct: 530 IAQPPLYKVKKGKQEQYLKDDPALTEYL 557



 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 4/95 (4%)

Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
             D     + L+      K    I R+KGLGEM   QL ET MD   R +L+V I   + 
Sbjct: 714 TKDVSSFVEALDWLMSESKRGQYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIEDAIG 773

Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
                      LMG + + R  FI+  A  + ++ 
Sbjct: 774 ----ADQLFTCLMGDQVEPRRDFIESNALNVANLD 804


>gi|89069843|ref|ZP_01157178.1| DNA gyrase subunit B [Oceanicola granulosus HTCC2516]
 gi|89044644|gb|EAR50760.1| DNA gyrase subunit B [Oceanicola granulosus HTCC2516]
          Length = 805

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 224/580 (38%), Positives = 338/580 (58%), Gaps = 16/580 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
              +   ++Y A SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DN +DE +AG+
Sbjct: 2   AEPERIPEDYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGH 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ + V +  +  ++V DNGRGIPV+ H +    S  E+I+T LHAGGKFD+++Y++SGG
Sbjct: 62  ADHVHVKIHADSSVSVSDNGRGIPVDIH-QGEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS  L + V R       +F  G  +  L+       + GT + F    
Sbjct: 121 LHGVGVSVVNALSVWLELRVWRNGKEHVARFEHGETVEHLKVVGDAHGRSGTEVRFLAST 180

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
             F +   +D   L K  +  A+L+  V+     D+        P   E ++ GG+K ++
Sbjct: 181 DTFSNL-DYDFHTLEKRLRELAFLNSGVRIILEDDR-----PAEPLHVELFYEGGVKEFV 234

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHES 332
           +    ++S +  E    +  +      TVE A+ W +   E+   + N I   +GGTH +
Sbjct: 235 KYLDRSKSAMLPEPIHVEGMRDDI---TVEVAMWWNDSYNEMVLPFTNNIPQRDGGTHMA 291

Query: 333 GLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR + KYA  +   +   ++   DD+      +LSV + +P+F+ QTK KLVS 
Sbjct: 292 GFRAALTRTVTKYATESGIAKREKVNFTGDDMREGLTCVLSVKVPDPKFSSQTKDKLVSS 351

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           + +  VE+ + +    +  +NP +A  ++  ++E ++ R   RK RE   RKTA+    L
Sbjct: 352 EVRPAVESLVSEKLAEWFEENPGQAKMIVSKIVEAAQAREAARKARELTRRKTAMDVNYL 411

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
            GKL DCS+     TE+F+VEGDSAGGSA+  R+R  QAVLPL+GKILNV  A  +++  
Sbjct: 412 AGKLKDCSEKDPTQTEVFLVEGDSAGGSAQTGRDRRTQAVLPLKGKILNVERARFDRMLG 471

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q+I +LV ALG    R ++    LRY K++IMTDADVDGAHI +LLLTFF+++M  LIE
Sbjct: 472 SQEIGNLVMALGTGIGRDEFDISKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQMPQLIE 531

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             H+++  PPL+++++G   VY  D+    + L E    G
Sbjct: 532 NGHIYIAQPPLYKVSRGRSEVYLKDQAAMDEYLIEQGVDG 571



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 4/86 (4%)

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
           +L+   + G+  + + R+KGLGEM   QL ET +D + RT L+V+I+       +  D  
Sbjct: 723 LLQAILEEGERGLTLQRYKGLGEMNPEQLWETTLDPDARTFLQVKIDDVT----EADDLF 778

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
            KLMG   + R +FIQ+ A  ++++ 
Sbjct: 779 TKLMGDVVEPRREFIQQNALSVENLD 804


>gi|323525276|ref|YP_004227429.1| DNA topoisomerase [Burkholderia sp. CCGE1001]
 gi|323382278|gb|ADX54369.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia sp. CCGE1001]
          Length = 661

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 242/674 (35%), Positives = 359/674 (53%), Gaps = 42/674 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +  +  Y  +SI++L+GLEPV+ RPGMY   T  +   H+  EVIDNA DE + GY 
Sbjct: 1   MSTKKPNAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYG 57

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151
             I V+L  +  ++V D+GRGIP   HP+      +EI+ T LHAGGKFD      Y  S
Sbjct: 58  RQITVTLHADHSVSVEDDGRGIPFGLHPE-EGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITF 209
           GGLHGVG+SV NALS  L VTV R   + +  F+ G    PLE +   +   K GTR+T 
Sbjct: 117 GGLHGVGVSVTNALSTRLDVTVWRDGKVAALSFAHGDVAKPLEVRAAAKGDKKSGTRVTA 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
             DPK F          L ++ +SKA L   V+     +K         E++ + +  GL
Sbjct: 177 WADPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVTLVNEK-------TGEQQSWKYEDGL 228

Query: 270 KTYLQTKLENRSLISSEIFTGKT-------EKKGTHRGTVEWAIAWCEENP-EITSYCNT 321
           + YL   +    L+       +        E+         W +AW EE P    SY N 
Sbjct: 229 RGYLLEGMNGSDLLIPLFEGERYAENSRASEETFAEGEGAAWVVAWSEEGPLTRESYVNL 288

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFA 380
           I T  GGTHESGLR  L + +K + EL     + + ++++D+      +LS  + +P+F 
Sbjct: 289 IPTPAGGTHESGLREGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQ 348

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQ K +L S DA + V +  R   + +L Q+     KL + VI++++ R R  ++ E  +
Sbjct: 349 GQIKERLNSRDAVKLVASFARPALELWLNQHVEHGKKLADLVIKQAQARTRAGQKVEKRK 408

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
            + +  L  PGKL DC        ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN  
Sbjct: 409 SSGVAVL--PGKLTDCESTDIGRNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTW 466

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLLT 557
               +++  N ++ D+  A+G    S   +    +LRY K+ I++DADVDG+HI  LLLT
Sbjct: 467 ETERDRLFANNEVHDISVAIGVDPHSPDDKVDLSNLRYGKICILSDADVDGSHIQVLLLT 526

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--K 609
            F++    LIE+ H+ +  PPLFR+    +G K    +YA DE   + IL++ +K G  +
Sbjct: 527 LFFKHFPQLIERGHVCVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDGVRE 586

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KAD 668
            +  ISRFKGLGEM A QL +T M+ + R L  V + +           +  LMG  +A 
Sbjct: 587 TQWSISRFKGLGEMSAEQLWDTTMNPDTRRLTPVALGELDYDTTVA--RMTMLMGKGEAA 644

Query: 669 ERFKFIQERASFID 682
            R  +++E+ + ++
Sbjct: 645 SRRSWLEEKGNEVE 658


>gi|194290253|ref|YP_002006160.1| DNA topoisomerase iv subunit b [Cupriavidus taiwanensis LMG 19424]
 gi|193224088|emb|CAQ70097.1| DNA topoisomerase IV, subunit B [Cupriavidus taiwanensis LMG 19424]
          Length = 663

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 244/668 (36%), Positives = 347/668 (51%), Gaps = 34/668 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           S +  Y  SSIR+L+GLEPV+ RPGMY   T      H+  EVIDNA DE + G+ + I 
Sbjct: 3   SKTSQYSESSIRVLKGLEPVKQRPGMY---TRTDNPLHIVQEVIDNASDEALGGHGSEIL 59

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA---GGKFDNSTYEISGGLH 155
           V+L  +G L+V D+GRGIPV  HP+      +EI+ T LHA     K     Y  SGGLH
Sbjct: 60  VTLHRDGSLSVEDDGRGIPVGIHPE-EGVPVVEIVFTRLHAGGKFDKGKGGAYAFSGGLH 118

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--LEKKEKVRNKRGTRITFRPDP 213
           GVG+SV NALS +L VTV R     +  FS G    P    K E+   K GTR+   PD 
Sbjct: 119 GVGVSVTNALSTQLDVTVWRDGMCSTLTFSGGDVTVPLASRKLERGEKKNGTRVQVWPDA 178

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF------PG 267
             + D A    A L ++ +SKA L   VK     +K    +    ++    +       G
Sbjct: 179 -RYFDSAAIPLAELQRLLRSKAVLLPGVKVTLVTEKTGERQTWQYDQGLKGYLVEALAQG 237

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEG 327
                +    E       +   G+         +   A    +  P   SY N I T  G
Sbjct: 238 SGAELVIPMFEGEHFADPDANPGEEGFADGEGASWVVAWT-EDGAPVRESYVNLIPTPAG 296

Query: 328 GTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           GTHESGLR  L + +K + E+     + + ++S+D+   A  +LS  + +P+F GQ K +
Sbjct: 297 GTHESGLREGLFQAVKSFIEMHALQPKGVKLMSEDVFARASFVLSAKVLDPQFQGQIKER 356

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L S DA R V    R   + +L  +     KL E VI +++ R R  ++ E  + + +  
Sbjct: 357 LNSRDAVRLVSTFSRPALELWLNHHVEYGKKLAELVIRQAQARTRAAQKVEKKKGSGVAV 416

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
           L  PGKL DC        ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN      ++
Sbjct: 417 L--PGKLTDCESTDVTRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTWETERDR 474

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +  N ++ D+  A+G        E D   LRY K+ I++DADVDGAHI  LLLT F++  
Sbjct: 475 LFANNEVHDIAVAIGVDPHGANDEPDLSNLRYGKICILSDADVDGAHIQVLLLTLFFRHF 534

Query: 564 YDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKIEIS 615
             LIE  ++++  PPLFR+    +G K    +YA DE   + I ++  K G  +   +IS
Sbjct: 535 PKLIETGNVYVARPPLFRVDAPARGKKPAQKLYALDEGELEAIQDKLLKDGVKENSWQIS 594

Query: 616 RFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFI 674
           RFKGLGEM A QL ET M+ + R LL V +      L  T + +N LMG  +A +R  ++
Sbjct: 595 RFKGLGEMSAEQLWETTMNPDTRRLLPVTL--GEYDLPQTVEMMNMLMGKGEAAQRRSWL 652

Query: 675 QERASFID 682
           +E+ + ++
Sbjct: 653 EEKGNEVE 660


>gi|325205300|gb|ADZ00753.1| DNA gyrase, B subunit [Neisseria meningitidis M04-240196]
          Length = 796

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 229/601 (38%), Positives = 339/601 (56%), Gaps = 24/601 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95
            +   + Y A SI++LEGLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V DNGRG+P   HPK   +S  E+I+T LHAGGKFDN++Y+ISGGLH
Sbjct: 62  KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD + +T+ R       +F RG    PL+      +K+GT + F    + 
Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGD-SDKKGTTVRFLASAET 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           FG+   +    L K  +  ++L+  V    + +++        + E F   GG+  ++Q 
Sbjct: 180 FGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
               ++ +  +IF    EK G    +VE A+ W +     +  + N I   +GGTH + L
Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R  +TR I  Y E  +   K  +    DD+      +LSV + +P+F+ QTK KLVS + 
Sbjct: 289 RQVMTRTINNYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEI 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
              V   +      +L +NP EA  +   +++ +  R   RK RE+ R+   +  L LPG
Sbjct: 349 GPVVNEVISQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSA Q R+R  QA+LPL+GKILNV  A  EK+  +Q
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468

Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALG     +    E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ 
Sbjct: 469 EVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPL++   G +  Y  DE  K + L          +  SR      +   +L  
Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVSDSR-----TIEGEELAN 583

Query: 631 T 631
           T
Sbjct: 584 T 584



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%)

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           ++ +G      +D +  +  L+      +  + I R+KGLGEM   QL ET MD   R L
Sbjct: 698 KLYKGDNE---YDIDSFEGALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRL 754

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           L+V I   +       +    LMG + + R  FI+  A    ++  
Sbjct: 755 LKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796


>gi|294787816|ref|ZP_06753060.1| DNA gyrase, B subunit [Simonsiella muelleri ATCC 29453]
 gi|294484109|gb|EFG31792.1| DNA gyrase, B subunit [Simonsiella muelleri ATCC 29453]
          Length = 812

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 234/584 (40%), Positives = 333/584 (57%), Gaps = 31/584 (5%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95
            +     Y A SI++LEGLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   TEQIQQEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V+++ +  +T+ DNGRGIP   HPK   +S  E+I+T LHAGGKFDN++Y++SGGLH
Sbjct: 62  NITVAINADESITIEDNGRGIPTGIHPK-EGRSAAEVIMTILHAGGKFDNNSYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPK 214
           GVG+SVVNALSD L +T+ R+       F RG  + PL+   +   NK GTR+ F    +
Sbjct: 121 GVGVSVVNALSDWLRLTIWREGKEHFVAFKRGETVEPLKVVGECDPNKHGTRVQFLASEE 180

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
            FG    +    L K  +  ++L+  VK      ++        + E F   GG+  +++
Sbjct: 181 TFGTV-QYKFETLAKRIRELSFLNNGVKIELFDKRD-------GKYENFAESGGVTGFVE 232

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               ++  +  +IF    EK G    TVE A+ W +     +  + N I   +GGTH + 
Sbjct: 233 YTRGSKKPLHDKIFYALGEKDG---MTVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTA 289

Query: 334 LRVALTRGIKKYAELTQNKRAISI------ISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           LR  +TR I +Y E  +  +  S         DD+      ILSV + +P+F+ QTK KL
Sbjct: 290 LRQVMTRTINQYIEANEIIKKSSKNNKLDVSGDDMREGLTCILSVKLPDPKFSSQTKDKL 349

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRK 446
           VS +    +   L +   ++L +NP  A  + + +I  +  R   RK RE   RK     
Sbjct: 350 VSSEIAPVISEVLNEHLKNFLEENPKIAKIITDKIILAATAREAARKARENIQRKNVFEG 409

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
           L LPGKLADC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K
Sbjct: 410 LNLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDK 469

Query: 507 IRNNQQIMDLVQALGCR---------TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557
           + +NQ+I  L  ALG              +   E LRY +VIIMTDADVDGAHI +LLLT
Sbjct: 470 VLDNQEISALFAALGISFGKKTDDDSNTPKINLEKLRYHRVIIMTDADVDGAHIRTLLLT 529

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           FFY++M +L+E+ ++++  PPL++   G    Y  DE+ K + L
Sbjct: 530 FFYRQMPELLERGYVYIAQPPLYKAKHGKTERYLKDEQEKDEFL 573



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 66/181 (36%), Gaps = 17/181 (9%)

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD-VDGAHIASLLLTFFYQEMYD 565
              NQ+I     A             L    +I   D   VD      LL T   ++   
Sbjct: 648 SLKNQEIALEYVAGNDDNHFIKMTRQLHGNVMISYLDQKFVDSKAYQILLKTA--EQQRG 705

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           L++     L         +G     A   +  ++ L+      +  + I R+KGLGEM  
Sbjct: 706 LLDAAGAELF--------KGDGD--AQTVKSFEEALDILLAGAQKGMMIQRYKGLGEMNP 755

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL ET M+ + R LL+V I   +        +   LMG + + R  FI+  A    ++ 
Sbjct: 756 EQLWETTMNPDVRRLLKVRIEDAI----AADKTFVTLMGDEVEPRRAFIENNALIAQNID 811

Query: 686 T 686
            
Sbjct: 812 A 812


>gi|255020212|ref|ZP_05292281.1| DNA gyrase subunit B [Acidithiobacillus caldus ATCC 51756]
 gi|254970354|gb|EET27847.1| DNA gyrase subunit B [Acidithiobacillus caldus ATCC 51756]
          Length = 801

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 226/570 (39%), Positives = 348/570 (61%), Gaps = 18/570 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           ++ YD++SI++L GLE VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY + I V
Sbjct: 2   TEKYDSTSIQVLRGLEAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGYCDRILV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V DNGRGIPV+ H +   +S  E+ILT LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDESVSVRDNGRGIPVDIHAE-EGRSAAEVILTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+ LH+ + R    ++Q++  G PL+PL++  +   KRGT I F+P  ++F D 
Sbjct: 121 SVVNALSEYLHLQIDRDGYRWTQEYRDGEPLAPLQR-GEASRKRGTEIRFKPSAQVFADT 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L +  +  A+L+  V      ++          +E F++ GG++ +++    +
Sbjct: 180 H-FHFEILARRLRELAFLNSGVHIQLRDERG------EGREEVFHYEGGIRAFVEHLNRS 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   + +    + G     VE A+ W E     +  + N I   +GGTH +G R AL
Sbjct: 233 KNAIHPTVISLSGARDGVM---VEAALQWNEGYNESVLCFTNNIPQADGGTHLAGFRAAL 289

Query: 339 TRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR + +Y E      K  +++  DD       +LSV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNQYMEREGILAKAKVAVSGDDAREGLTAVLSVKVPDPKFSSQTKEKLVSSEVKPIV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
           E ++ +    +L ++P EA  +   V+E +  R   R+ RE   RK A+    LPGKLAD
Sbjct: 350 EASMAEALGIFLDEHPREAQAIAAKVVEAARAREAARRARELTRRKGALDIANLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +      E+++VEGDSAGGSAKQ R+R +QA+LPL+GKILNV  A  +K+ ++ +I  
Sbjct: 410 CQEKDPAKCEIYLVEGDSAGGSAKQGRDRRHQAILPLKGKILNVERARFDKMLSSDEIGT 469

Query: 516 LVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALG     +  +   LRY +VIIMTDADVDG+HI +LLLTFFY++M +L+ + H+++
Sbjct: 470 LITALGTGIGQEDFDVTKLRYHRVIIMTDADVDGSHIRTLLLTFFYRQMPELVARGHVYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
             PPL+++ +G    Y  D++     L E 
Sbjct: 530 AQPPLYKVKKGKDERYIKDDQELATYLREL 559



 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 9/106 (8%)

Query: 581 RITQGTKSVYAHDE-EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           RI +G KS     E  H ++ ++      +  +EI R+KGLGEM   QL ET M+A+ R 
Sbjct: 703 RIHRGDKS----SELRHFRQGMQWLLAQARQGVEIQRYKGLGEMNPEQLWETTMNADNRR 758

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           L+RV++   +       +  + LMG   + R +FI+E A F+  + 
Sbjct: 759 LVRVDVEDAI----AADEVFSMLMGDAVEPRRRFIEENARFVSRLD 800


>gi|253698660|ref|YP_003019849.1| DNA gyrase B subunit [Geobacter sp. M21]
 gi|251773510|gb|ACT16091.1| DNA gyrase, B subunit [Geobacter sp. M21]
          Length = 796

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 240/576 (41%), Positives = 350/576 (60%), Gaps = 18/576 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           N     +Y A  I+ILEGLE VR RP MYIG T  + LHHL  E++DNA+DE +AGY + 
Sbjct: 2   NSEEQGDYGADKIQILEGLEAVRKRPAMYIGSTAAQGLHHLVYELVDNAIDEALAGYCDA 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           ++V +  +G +TV DNGRGIP + HP    +S  E++LT LHAGGKFDNS+Y++SGGLHG
Sbjct: 62  VQVIIHLDGSVTVEDNGRGIPTDMHP-TEGRSAAEVVLTVLHAGGKFDNSSYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS  L + + R   +++Q + +G+P +PLE   + +  RGT+ITF PD +IF
Sbjct: 121 VGSSVVNALSTRLDLEIRRNGHVYTQTYRKGVPQAPLEITGETKR-RGTKITFFPDGEIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                F    L K  +  A+L+  V+     ++         +  +F++ GG++++++  
Sbjct: 180 ET-TEFSFDVLSKRLRELAFLNAGVRIKIHDER-------FDKDHDFFYEGGIRSFVEYL 231

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            +N++L++ E    + EK G     +E A+ + +    ++ S+ N I T EGGTH  G +
Sbjct: 232 NKNKNLVNPEPIYIRGEKSGV---DIEIAMQYNDSYDEKVFSFANNINTHEGGTHLIGFK 288

Query: 336 VALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR +  YA      + +   I  +DL      ++SV I +P+F GQTKTKL + + +
Sbjct: 289 AALTRTMNTYANTNNLLKNVKVAISGEDLREGLTAVISVKISQPQFEGQTKTKLGNSEVK 348

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
             VE  + +    YL +NP  A K+LE  I+ +  R   RK RE   RK A+    LPGK
Sbjct: 349 GYVETLMNEKLATYLEENPAMARKILEKSIDAARAREAARKARELTRRKGALEVGTLPGK 408

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +      ELF+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+  +Q+
Sbjct: 409 LADCQEKDPALCELFLVEGDSAGGSAKQGRDRKYQAILPLKGKILNVEKARFDKMLASQE 468

Query: 513 IMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           I  L+ ALG    +  +    LRY ++I+MTDADVDG+HI +LLLTFF+++M +LIE+ +
Sbjct: 469 IRTLISALGTSIGKEDFDIAKLRYHRIIVMTDADVDGSHILTLLLTFFFRQMLELIERGY 528

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607
           L++  PPL++I +G K  Y  +E   Q  L E    
Sbjct: 529 LYIAQPPLYKIKRGRKEQYLKNEAALQAYLLEEGTE 564



 Score =  133 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 4/88 (4%)

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           + IL  F +  K  + I R+KGLGEM   QL ET M    R LL+V+I   +      ++
Sbjct: 712 EDILSFFMESAKKGLYIQRYKGLGEMNPEQLWETTMHQENRVLLQVKIEDAV----AAEE 767

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
               LMG + + R  FI++ A  + ++ 
Sbjct: 768 IFTVLMGDQVEPRRDFIEQNALNVSNLD 795


>gi|115380006|ref|ZP_01467056.1| DNA gyrase subunit B [Stigmatella aurantiaca DW4/3-1]
 gi|115362985|gb|EAU62170.1| DNA gyrase subunit B [Stigmatella aurantiaca DW4/3-1]
          Length = 616

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 251/627 (40%), Positives = 357/627 (56%), Gaps = 17/627 (2%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNG-FLTVVDNGRGIPVENHP 122
           MYIGGTD    HHL  E++DN++DEVI G+A+ +EV+L  +   +TVVDNGRGIPV+  P
Sbjct: 1   MYIGGTDGTGYHHLLWEILDNSVDEVINGHASTVEVTLHKDSRTITVVDNGRGIPVDIMP 60

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
           K   K  +E+ILTTLHAGGKF+   Y  SGGLHGVG SVVNAL+ +L V + R+     Q
Sbjct: 61  KL-KKPAVEVILTTLHAGGKFEQGNYIHSGGLHGVGSSVVNALARKLLVEIKREGKRHVQ 119

Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
            ++RG   +PL+ +   R   GT ITF PDP+IFG+K  FD   + +  ++K+YL   + 
Sbjct: 120 HYARGKATTPLKVEGPARG-TGTSITFEPDPEIFGEKLKFDPELIRERLEAKSYLHKGMT 178

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
             W       E         +   GG+  YL   +  R+                    +
Sbjct: 179 VVWKD-----ETASPATSVTYKHDGGIAEYLNKVVAERNKPVVPPGGAVFYHARDSEVRL 233

Query: 303 EWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISD 360
           E A+ W E  +  I SY N I T +GGTHE+GLR A+ + ++ Y E      + +++ ++
Sbjct: 234 EAALVWTEATDENIRSYVNGIPTPQGGTHEAGLRGAVVKAVRNYIETHNLSPKGVTLTAE 293

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D+      ILS ++ EP+F GQTK +L + +    V+  LR   + +L  N       + 
Sbjct: 294 DIREGITAILSCYVVEPQFQGQTKGRLNNPEVTAQVDGVLRPALEKWLNDNKSIGEAAVA 353

Query: 421 WVIERSEERLRRRKQRE--VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
            +I  +  R   R   +    +     +L LPGKLADCS      +ELF+VEGDSAGGSA
Sbjct: 354 RIILAARAREASRAASQAVSRKTAVSHRLNLPGKLADCSSTEPSTSELFLVEGDSAGGSA 413

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538
           KQ R+R  QA+LPLRGK+LN   A ++K+  N+++ D+V ALGC   S +    LRY ++
Sbjct: 414 KQGRDRRTQAILPLRGKVLNAEQASTDKVATNKELQDIVSALGCGIGSDFDLSKLRYGRI 473

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQ 598
            ++ DAD DG HIA+LLLTFFY+ +  LIE   + +  PPL+++  G ++ +A DE  + 
Sbjct: 474 FLLMDADSDGHHIATLLLTFFYRHLRPLIESGAVHIAQPPLYKVEIGKETYWALDEADRD 533

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           +I+ E K  G  K  I RFKGLGEM A +LK T +D +KR  L+V I+  L    +T   
Sbjct: 534 RIVRE-KAKGNAKPNIMRFKGLGEMTADELKTTTLDPHKRMSLQVTIDNPL----ETDRV 588

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
           IN L+G     RFKFI ERA  + D+ 
Sbjct: 589 INDLLGKDVSARFKFIMERAGEVQDLD 615


>gi|325145282|gb|EGC67560.1| DNA gyrase, B subunit [Neisseria meningitidis M01-240013]
          Length = 796

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 229/601 (38%), Positives = 340/601 (56%), Gaps = 24/601 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95
            +   + Y A SI++LEGLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V DNGRG+P   HPK   +S  E+I+T LHAGGKFDN++Y+ISGGLH
Sbjct: 62  KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD + +T+ R       +F RG    PL+      +K+GT + F    + 
Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGD-SDKKGTTVRFLASAET 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           FG+   +    L K  +  ++L+  V    + +++        + E F   GG+  ++Q 
Sbjct: 180 FGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
               ++ +  +IF    EK G    +VE A+ W +     +  + N I   +GGTH + L
Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R  +TR I  Y E  +   K  +    DD+      +LSV + +P+F+ QTK KLVS + 
Sbjct: 289 RQVMTRTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEI 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
              V   +      +L +NP EA  +   +++ +  R   RK RE+ R+   +  L LPG
Sbjct: 349 GPVVNEVISQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSA Q R+R  QA+LPL+GKILNV  A  EK+  +Q
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468

Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALG     +    E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ 
Sbjct: 469 EVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPL++   G +  Y  DE  K + L          I   R      +  ++L +
Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIISDGR-----TIEGAELAD 583

Query: 631 T 631
           T
Sbjct: 584 T 584



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 10/108 (9%)

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L++   G      +D +  +  L+      +  + I R+KGLGEM   QL ET MD   R
Sbjct: 699 LYKGENG------YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVR 752

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
            LL+V I   +       +    LMG + + R  FI+  A    ++  
Sbjct: 753 RLLKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796


>gi|86139413|ref|ZP_01057982.1| DNA gyrase subunit B [Roseobacter sp. MED193]
 gi|85823916|gb|EAQ44122.1| DNA gyrase subunit B [Roseobacter sp. MED193]
          Length = 805

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 222/571 (38%), Positives = 334/571 (58%), Gaps = 16/571 (2%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           N+ +   Y A SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DN +DE +A +A+
Sbjct: 4   NEQSPAEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAKHAD 63

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            + V++  +  ++V DNGRGIPV  H +    S  E+I+T LHAGGKFD+++Y++SGGLH
Sbjct: 64  HVRVTIHADSSVSVYDNGRGIPVGIHEE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGGLH 122

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD L + + R+      +F RG     L+      ++ GT + F      
Sbjct: 123 GVGVSVVNALSDWLELRIWREGKEHVARFERGDTAEHLKVVGDCGDQTGTEVRFMASTDT 182

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   +    L K  +  A+L+  VK   + ++          + E ++ GG+K +++ 
Sbjct: 183 FSNL-EYSFETLEKRLRELAFLNSGVKIILADER-----PAERLESELFYEGGVKEFVKY 236

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              +++ +         EK       VE A+ W +     +  + N I   +GGTH +G 
Sbjct: 237 LDRSKTPVMDSPVYITGEKDDI---GVEVAMWWNDSYHESVLPFTNNIPQRDGGTHLAGF 293

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR I  YA+ +    K  +S   DD       +LSV + +P+F+ QTK KLVS + 
Sbjct: 294 RGALTRTINNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEV 353

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
           +  VE+ + +    +  +NP +A +++  ++E +  R   RK RE   RKTA+    L G
Sbjct: 354 RPVVESLVNEKLAEWFEENPNQAKQIVGKIVEAALAREAARKARELTRRKTAMDVNFLAG 413

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL DCS+     TE+F+VEGDSAGGSA+  R+R  QA+LPLRGKILNV  A  +++  +Q
Sbjct: 414 KLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLRGKILNVERARFDRMLGSQ 473

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           +I +LV ALG    R ++  + LRY K++IMTDADVDGAHI +LLLTFFY++M +LIE  
Sbjct: 474 EIGNLVMALGTGIGRDEFNIDKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIEGG 533

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +L++  PPL+++ +G   VY  D+      L
Sbjct: 534 YLYIAQPPLYKVARGKSEVYLKDQAALDDYL 564



 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L+   + G+  + + R+KGLGEM   QL ET +D + RTLL+V ++  +       D 
Sbjct: 722 DLLKAIMEEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVRVDDLVG----ADDL 777

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R +FIQ+ A  ++++ 
Sbjct: 778 FTKLMGDVVEPRREFIQKNALSVENLD 804


>gi|325143186|gb|EGC65528.1| DNA gyrase, B subunit [Neisseria meningitidis 961-5945]
 gi|325197495|gb|ADY92951.1| DNA gyrase, B subunit [Neisseria meningitidis G2136]
          Length = 796

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 229/601 (38%), Positives = 339/601 (56%), Gaps = 24/601 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95
            +   + Y A SI++LEGLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V DNGRG+P   HPK   +S  E+I+T LHAGGKFDN++Y+ISGGLH
Sbjct: 62  KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD + +T+ R       +F RG    PL+      +K+GT + F    + 
Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGD-SDKKGTTVRFLASAET 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           FG+   +    L K  +  ++L+  V    + +++        + E F   GG+  ++Q 
Sbjct: 180 FGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
               ++ +  +IF    EK G    +VE A+ W +     +  + N I   +GGTH + L
Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R  +TR I  Y E  +   K  +    DD+      +LSV + +P+F+ QTK KLVS + 
Sbjct: 289 RQVMTRTINNYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEI 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
              V   +      +L +NP EA  +   +++ +  R   RK RE+ R+   +  L LPG
Sbjct: 349 GPVVNEVISQALTDFLEENPTEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSA Q R+R  QA+LPL+GKILNV  A  EK+  +Q
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468

Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALG     +    E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ 
Sbjct: 469 EVATLITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPL++   G +  Y  DE  K + L          +  SR      +   +L  
Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVSDSR-----TIEGEELAN 583

Query: 631 T 631
           T
Sbjct: 584 T 584



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%)

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           ++ +G      +D +  +  L+      +  + I R+KGLGEM   QL ET MD   R L
Sbjct: 698 KLYKGDNE---YDIDSFEGALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPTVRRL 754

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           L+V I   +       +    LMG + + R  FI+  A    ++  
Sbjct: 755 LKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796


>gi|24371611|ref|NP_715653.1| DNA gyrase, B subunit [Shewanella oneidensis MR-1]
 gi|24345361|gb|AAN53098.1|AE015452_11 DNA gyrase, B subunit [Shewanella oneidensis MR-1]
          Length = 805

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 223/582 (38%), Positives = 346/582 (59%), Gaps = 18/582 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I 
Sbjct: 2   SENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTDIT 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           +++  +G ++V D+GRGIPV  H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG
Sbjct: 62  ITIHVDGSVSVKDDGRGIPVSIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS +L +T+ R   +  Q ++ G+P +P+++        GT I F P  + F +
Sbjct: 121 VSVVNALSKKLQLTIRRDGKVHEQFYTHGVPDAPIKEIGDATK-TGTEIRFWPSEQTFSN 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      +++        + E F + GG+  ++     
Sbjct: 180 V-EFHFEILAKRVRELSFLNSGVGIRLVDERDN-------KNEFFKYEGGISAFVDYLNR 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++ ++F    E+      TVE A+ W +     I  + N I   +GGTH +G R A
Sbjct: 232 NKTPVNKDVFHFMQERDD--GITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLAGFRSA 289

Query: 338 LTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K   +   DD       ++SV + +P+F+ QTK KLVS + +  
Sbjct: 290 LTRNLNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAA 349

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454
           VE  + +  + YL++NP +A  ++  +++ +  R   RK R    RK A+    LPGKLA
Sbjct: 350 VEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLA 409

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++ 
Sbjct: 410 DCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 469

Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            L+ ALGC   R +Y  +  RY  +IIMTDADVDG+HI +LLLTFF+++M +LIE+ +++
Sbjct: 470 TLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVY 529

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615
           +  PPLF++ +G +  Y  DE    + L      G       
Sbjct: 530 IAQPPLFKVKKGKQEQYLKDESALTQYLTTQALDGTSIYPSQ 571



 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           + L+      K  + I R+KGLGEM   QL ET MD   R +L+V I+  +         
Sbjct: 722 EALDWTISEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVG----ADQL 777

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
              LMG + + R +FI+  A  + ++ 
Sbjct: 778 FTCLMGDQVEPRREFIEANALNVANLD 804


>gi|308447343|ref|XP_003087405.1| hypothetical protein CRE_12456 [Caenorhabditis remanei]
 gi|308256863|gb|EFP00816.1| hypothetical protein CRE_12456 [Caenorhabditis remanei]
          Length = 822

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 225/581 (38%), Positives = 341/581 (58%), Gaps = 19/581 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85
                  +    +    YD+SSI++L GL+ VR RPGMYIG TD+   LHH+  EV+DNA
Sbjct: 2   SSEDQIASQTEPTIEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNA 61

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AG+ + I V++  +  ++V DNGRGIP + HP+    S  E+ILT LHAGGKFD+
Sbjct: 62  IDEALAGHCDEILVTIHEDESVSVADNGRGIPTDIHPE-EGVSAAEVILTILHAGGKFDD 120

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +L +T+ R   I  Q++  G P+ PL+    V    GT
Sbjct: 121 NSYKVSGGLHGVGVSVVNALSSKLELTIHRAGHIHQQEYKHGDPVYPLKIVGDV-ETTGT 179

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            + F P  + F     F+   L +  +  ++L+  V+     ++   E         F +
Sbjct: 180 IVRFWPSTETFSQTI-FNVDILARRLRELSFLNAGVRIVLRDERVALE-------HVFDY 231

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GGL  +++   + ++ ++         + G     VE A+ W +     +  + N I  
Sbjct: 232 EGGLSEFVKYINQGKTHLNEIFHFTTQAENGI---GVEVALQWNDTYQENVRCFTNNIPQ 288

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTRG+  Y E      K  +++  DD       I+SV + +P+F+ Q
Sbjct: 289 KDGGTHLAGFRAALTRGLNSYMENENLLKKEKVAVTGDDAREGLTAIVSVKVPDPKFSSQ 348

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441
           TK KLVS + +  VE A+   F  YL++NP  A  +   +I+ +  R   RK      RK
Sbjct: 349 TKEKLVSSEVKPAVEQAMNKAFSEYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRK 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           +A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  
Sbjct: 409 SALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +K+ ++Q++  L+ ALGC   R +Y  + LRY K+IIMTDADVDG+HI +LLLTFF+
Sbjct: 469 ARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFF 528

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++M +L+E+ ++++  PPL+++ +G +  Y  D +  +  L
Sbjct: 529 RQMPELVERGYIYIAQPPLYKLKKGKQEQYIKDNDALETYL 569



 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 17/126 (13%)

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           +  + L+E+   +L         +G + +   +     ++ +      +  + I R+KGL
Sbjct: 714 KSWFTLLEEG-AYL--------QKGERKI---NVSTFHQVWQHILTDSRRGMMIQRYKGL 761

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GEM A QL ET MD   R +L+V I+  +    +       LMG   + R  FI+E A  
Sbjct: 762 GEMNAEQLWETTMDPENRNMLQVTIDDAI----EADRMFACLMGDDVEPRRAFIEENALN 817

Query: 681 IDDVGT 686
            D +  
Sbjct: 818 AD-IDA 822


>gi|209693646|ref|YP_002261574.1| DNA gyrase subunit B [Aliivibrio salmonicida LFI1238]
 gi|208007597|emb|CAQ77697.1| DNA gyrase subunit B [Aliivibrio salmonicida LFI1238]
          Length = 805

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 233/566 (41%), Positives = 346/566 (61%), Gaps = 16/566 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I V
Sbjct: 2   SENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP E H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDDSVSVSDDGRGIPTEIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+++ +T+ R+  IF Q +  G+P +PL       +  GT+I F P  + F + 
Sbjct: 121 SVVNALSEKVELTINRRGEIFQQIYCHGVPQAPLAVIG-TTDTTGTKIRFWPSDQTFANI 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V       +E        + + F F GG+K ++     N
Sbjct: 180 -EFVYDILAKRLRELSFLNSGVSIRLQDMRE------EDKSDHFMFEGGIKAFVTHLNRN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ +  +IF   +E+K      VE A+ W +     I  Y N I   +GG H SG R AL
Sbjct: 233 KTPVHQKIFYFDSERK-EDGIVVEVAMQWNDSYQENIFCYTNNIPQRDGGAHLSGFRSAL 291

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  + +      K   S   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 292 TRTLNSFMDKEGFSKKAKSSASGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 351

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 352 ESAMNEKLAEFLAENPGEAKMVCSKIIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 411

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 412 CQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGT 471

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++
Sbjct: 472 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 531

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +  Y  DEE   + 
Sbjct: 532 AQPPLYKVKKGKQEQYIKDEEAMAEY 557



 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
             + +    K  +  + + R+KGLGEM   QL ET MD + R +++V IN  +       
Sbjct: 720 LDEAIAWLIKDSRRGVYLQRYKGLGEMNPEQLWETTMDPDSRRMMQVTINDAV----SAD 775

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           +    LMG   + R  FI+E A  + ++ 
Sbjct: 776 ELFTTLMGDHVEPRRNFIEENALRVANLD 804


>gi|85375173|ref|YP_459235.1| type IIA topoisomeraseb subunit [Erythrobacter litoralis HTCC2594]
 gi|84788256|gb|ABC64438.1| type IIA topoisomeraseB subunit [Erythrobacter litoralis HTCC2594]
          Length = 847

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 227/604 (37%), Positives = 353/604 (58%), Gaps = 29/604 (4%)

Query: 26  SGEIPDSPAFANQSASDN--YDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVI 82
           S E PD+P    +    N  Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV 
Sbjct: 2   SQETPDTPEAIPEKVRQNGEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVS 61

Query: 83  DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142
           DNA+DE +AG+ +L+ + L+ +G ++V DNGRGIPV+ H K    S  E+I+T LHAGGK
Sbjct: 62  DNAIDEALAGHCDLVLIELNPDGSVSVEDNGRGIPVDMH-KEEGVSAAEVIMTQLHAGGK 120

Query: 143 F----DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           F    D++ Y++SGGLHGVG+SVVNALS+ L + + R       +F  G  +  LE    
Sbjct: 121 FENTSDDNAYKVSGGLHGVGVSVVNALSEWLELVIWRDGKEHYMRFEHGEAVKSLEVTGD 180

Query: 199 VRN----------KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
                        K+GTR+TF      F +   FD  +L    +  A+L+  V+      
Sbjct: 181 APRVDQNPDDNGFKKGTRVTFMASHDTFKNVTDFDFEKLEHRYRELAFLNSGVRILLRDK 240

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +    +       + ++ GG+  +++    N+  + +E  +   EK G     ++ A+ W
Sbjct: 241 RHEDVREH-----DMFYEGGIAAFVKYLDRNKQPLVAEPISVSAEKDGI---GIDVALQW 292

Query: 309 CE-ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
            +     + ++ N I   +GGTH +  R ALTR +  YA  +    K  +S+  +D+   
Sbjct: 293 NDSYYENVLTFTNNIPQRDGGTHLAAFRSALTRTLNNYATASGLLKKEKVSLSGEDMREG 352

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              I+SV + +P+F  QTK KLVS + ++ +E+ + +    +L +NP +A  +++ +I+ 
Sbjct: 353 LTAIVSVKLPDPKFGSQTKDKLVSSEVRQPLESLMGEKMGEWLEENPNDAKAIVQKIIDA 412

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
           +  R   RK RE++RK A+    LPGKLADC +     +ELF+VEGDSAGGSAKQ R+R 
Sbjct: 413 AAAREAARKAREMSRKGAMSVASLPGKLADCQERDPAKSELFLVEGDSAGGSAKQGRDRK 472

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545
            QA+LPL+GKILNV  A  ++I +++++  L+QA+G   R ++  E LRY K++IMTDAD
Sbjct: 473 TQAILPLKGKILNVERARFDRIISSKEVGTLIQAMGTGLRDEFNLEKLRYHKIVIMTDAD 532

Query: 546 VDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605
           VDGAHI +LLLTFF+++M ++++  HLF+  PPL+++++G   VY  D+    + L    
Sbjct: 533 VDGAHIRTLLLTFFHRQMPEIVKAGHLFIAQPPLYKVSKGRSEVYLKDDRELDRYLISGG 592

Query: 606 KHGK 609
             G+
Sbjct: 593 LQGR 596



 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           ++L+     G+  + I+R+KGLGEM A QL ET +D   R LL+V++         T + 
Sbjct: 764 ELLDAVLAAGRKGLSIARYKGLGEMNAEQLWETTLDPEARILLQVKVED----ADVTDEI 819

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             +LMG   + R +FIQ+ A  + ++ 
Sbjct: 820 FTRLMGDVVEPRREFIQDNALNVANLD 846


>gi|152984068|ref|YP_001345400.1| DNA gyrase subunit B [Pseudomonas aeruginosa PA7]
 gi|150959226|gb|ABR81251.1| DNA gyrase, B subunit [Pseudomonas aeruginosa PA7]
          Length = 806

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 232/570 (40%), Positives = 349/570 (61%), Gaps = 20/570 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S ++ YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGY + I
Sbjct: 2   SENNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCSEI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            +++  +  +TV DNGRGIPV+ H K    S  E+I+T LHAGGKFD++TY++SGGLHGV
Sbjct: 62  SITIHTDESITVRDNGRGIPVDIH-KEEGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS EL +T+ R N ++ Q +  G+P  PL +  +  +  GT + F+P P+ F 
Sbjct: 121 GVSVVNALSHELRLTIRRHNKVWEQVYHHGVPQFPLREVGET-DGSGTEVHFKPSPETFS 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++         ++E F + GGLK +++   
Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGILLRDER-------TGKEELFKYEGGLKAFVEYLN 231

Query: 278 ENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            N+S ++       + E+ G     VE A+ W +     I  + N I   +GGTH +G R
Sbjct: 232 TNKSAVNQVFHFNVQREEDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFR 288

Query: 336 VALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR +  Y E     +        DD       I+SV + +P+F+ QTK KLVS + +
Sbjct: 289 SALTRNLNNYIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVK 348

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGK 452
             VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPGK
Sbjct: 349 TAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGK 408

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +     +EL+IVEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q+
Sbjct: 409 LADCQEKDPALSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMLSSQE 468

Query: 513 IMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF+++M +LIE+ +
Sbjct: 469 VGTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGY 528

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +++  PPL+++ +G +  Y  D++  ++ +
Sbjct: 529 VYIAQPPLYKVKRGKQEQYIKDDQAMEEYM 558



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 11/106 (10%)

Query: 582 ITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           + +G   + + A  +      L+     G  +  I R+KGLGEM   QL ET MD N R 
Sbjct: 709 VQKGERKRPISAFKDG-----LDWLMAEGTKRHSIQRYKGLGEMNPEQLWETTMDPNVRR 763

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +L+V I   +          N LMG   + R  FI+  A  + ++ 
Sbjct: 764 MLKVTIEDAI----AADQIFNTLMGDAVEPRRDFIESNALAVSNLD 805


>gi|300114694|ref|YP_003761269.1| DNA topoisomerase IV subunit B [Nitrosococcus watsonii C-113]
 gi|299540631|gb|ADJ28948.1| DNA topoisomerase IV, B subunit [Nitrosococcus watsonii C-113]
          Length = 628

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 246/624 (39%), Positives = 351/624 (56%), Gaps = 23/624 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S NY+A++I +L GL+PVR RPGMY   TD +  +HL  EVIDN++DE IAG+A  I+V 
Sbjct: 2   SGNYNAAAIEVLTGLDPVRKRPGMY---TDTQRPNHLAQEVIDNSVDEAIAGFATHIDVV 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +G LTV D+GRG+PV+ HP+      +E+IL+ LHAGGKF + +Y  +GGLHGVG+S
Sbjct: 59  LQSDGSLTVRDDGRGMPVDLHPE-ERLPGIEVILSRLHAGGKFSSKSYRFAGGLHGVGVS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  L V V R +  +   F+ G  +S L    KV +   GT + F PDP  F D 
Sbjct: 118 VVNALSSRLEVWVRRDSCEYHIAFANGERVSALRAINKVGKRSTGTVLRFWPDPA-FFDT 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  ARL  + ++KA L   ++  +S            E   + +  GL  YL+ +L  
Sbjct: 177 PKFSVARLKHILRAKAVLCPGLQVTFSD-------VVTGEAANWRYQEGLLAYLRDELGA 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVA 337
            S +    FTG+ +        V WA  W  E  E+   SY N I T +GGTH +GLR  
Sbjct: 230 LSYLPDPPFTGEMQGNTE---EVCWAFTWLPEGGEVVAESYVNLIPTPQGGTHVNGLRGG 286

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           +   ++++ E      + + +  DD+      +LSV + +P+F+GQTK +L S +    V
Sbjct: 287 VLEAVREFCEFRNLLPKGVKLAPDDVWERVSYVLSVKLLDPQFSGQTKERLSSRECASFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L Q+      + E  I+ ++ RLR  + ++V RK       LPGKLADC
Sbjct: 347 AGVVKDSFSLWLNQHVAIGEAIAELAIDNAQRRLR--QAKKVVRKRIQAGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +      TELF+VEGDSAGGSAKQ R+R  QA++PLRGKILN     S ++  +Q++ ++
Sbjct: 405 TSQEVSLTELFLVEGDSAGGSAKQGRDREFQAIMPLRGKILNTWEIDSAQVLASQEVHNI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             ALG    S    + LRY K+ I+ DAD DGAHIA+LL   F +    L+E  H+++  
Sbjct: 465 AVALGVDPGSDKL-DSLRYGKICILADADSDGAHIAALLSALFLRHFRPLVEAGHIYVAM 523

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDA 635
           PPL+RI  G +  YA D   +Q +L+       KGKI I RFKGLGEM   QL+ET M  
Sbjct: 524 PPLYRIDVGKRVFYALDGAERQGVLDRIAAEKIKGKINIQRFKGLGEMNPMQLRETTMAP 583

Query: 636 NKRTLLRVEINKDLNSLKDTQDSI 659
             R L+R+ +  + +        +
Sbjct: 584 ETRRLVRLTVTPEDDPEPLLDRLL 607


>gi|15595202|ref|NP_064724.1| DNA gyrase subunit B [Pseudomonas aeruginosa PAO1]
 gi|107098998|ref|ZP_01362916.1| hypothetical protein PaerPA_01000004 [Pseudomonas aeruginosa PACS2]
 gi|116053724|ref|YP_788159.1| DNA gyrase subunit B [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218888750|ref|YP_002437614.1| DNA gyrase subunit B [Pseudomonas aeruginosa LESB58]
 gi|296386476|ref|ZP_06875975.1| DNA gyrase subunit B [Pseudomonas aeruginosa PAb1]
 gi|313111474|ref|ZP_07797275.1| DNA gyrase subunit B [Pseudomonas aeruginosa 39016]
 gi|81857426|sp|Q9I7C2|GYRB_PSEAE RecName: Full=DNA gyrase subunit B
 gi|9945822|gb|AAG03394.1|AE004440_4 DNA gyrase subunit B [Pseudomonas aeruginosa PAO1]
 gi|115588945|gb|ABJ14960.1| DNA gyrase subunit B [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218768973|emb|CAW24731.1| DNA gyrase subunit B [Pseudomonas aeruginosa LESB58]
 gi|310883777|gb|EFQ42371.1| DNA gyrase subunit B [Pseudomonas aeruginosa 39016]
          Length = 806

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 230/570 (40%), Positives = 349/570 (61%), Gaps = 20/570 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S ++ YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGY + I
Sbjct: 2   SENNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCSEI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            +++  +  +TV DNGRGIPV+ H K    S  E+I+T LHAGGKFD++TY++SGGLHGV
Sbjct: 62  SITIHTDESITVRDNGRGIPVDIH-KEEGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS EL +T+ R N ++ Q +  G+P  PL +  +  +  GT + F+P P+ F 
Sbjct: 121 GVSVVNALSHELRLTIRRHNKVWEQVYHHGVPQFPLREVGET-DGSGTEVHFKPSPETFS 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++         ++E F + GGLK +++   
Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGILLRDER-------TGKEELFKYEGGLKAFVEYLN 231

Query: 278 ENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            N++ ++       + E+ G     VE A+ W +     +  + N I   +GGTH +G R
Sbjct: 232 TNKTAVNEVFHFNVQREEDGV---GVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFR 288

Query: 336 VALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR +  Y E     +        DD       I+SV + +P+F+ QTK KLVS + +
Sbjct: 289 SALTRNLNNYIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVK 348

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGK 452
             VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPGK
Sbjct: 349 TAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGK 408

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +     +EL+IVEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q+
Sbjct: 409 LADCQEKDPALSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMLSSQE 468

Query: 513 IMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF+++M +LIE+ +
Sbjct: 469 VGTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGY 528

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +++  PPL+++ +G +  Y  D++  ++ +
Sbjct: 529 IYIAQPPLYKVKRGKQEQYIKDDQAMEEYM 558



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 11/106 (10%)

Query: 582 ITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           + +G   + + A  +      L+     G  +  I R+KGLGEM   QL ET MD N R 
Sbjct: 709 VQKGERKRPISAFKDG-----LDWLMAEGTKRHSIQRYKGLGEMNPEQLWETTMDPNVRR 763

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +L+V I   +          N LMG   + R  FI+  A  + ++ 
Sbjct: 764 MLKVTIEDAI----AADQIFNTLMGDAVEPRRDFIESNALAVSNLD 805


>gi|88798536|ref|ZP_01114120.1| DNA gyrase subunit B [Reinekea sp. MED297]
 gi|88778636|gb|EAR09827.1| DNA gyrase subunit B [Reinekea sp. MED297]
          Length = 804

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 234/579 (40%), Positives = 341/579 (58%), Gaps = 20/579 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           SDNYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I V
Sbjct: 2   SDNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSEITV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  N  ++V DNGRGIP E H +   +S  E+ILT LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHPNESVSVEDNGRGIPTEIHEE-EGRSAAEVILTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS EL +T+ R   +  Q +S G+P+ PL+      +  GT+ITF P    F + 
Sbjct: 121 SVVNALSAELKLTIRRGGKVHEQDYSHGVPVEPLKVVGDA-DTTGTKITFLPSSGTFANI 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             +    L K  +  ++L+  V      ++   E       + F++ GGLK ++     N
Sbjct: 180 -KYSYDILAKRLRELSFLNSGVAIRLKDERTAQE-------DYFHYEGGLKAFVTYLNRN 231

Query: 280 RSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           +  ++       + E+ G     VE A+ W +     I SY N I   +GGTH +G R A
Sbjct: 232 KQTLNEVFHFSFEREEDGI---GVEVALQWNDSYQENIFSYTNNIPQRDGGTHLAGFRAA 288

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y +      K+ ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 289 LTRTLNSYIQQENLLKKQKVATSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKPA 348

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  +   F  YL+++P EA  ++  +I+ +  R   RK      RK A+    LPGKLA
Sbjct: 349 VEQEMSRVFSEYLIEHPNEAKVVVGKMIDAARAREAARKARDMTRRKGALDIAGLPGKLA 408

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL++VEGDSAGGSAK  R+R  QA+LPL+GKILNV  A  +K+  + ++ 
Sbjct: 409 DCQEKDPALSELYLVEGDSAGGSAKMGRDRRTQAILPLKGKILNVEKARFDKMLQSAEVG 468

Query: 515 DLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            L+ ALGC    +    E LRY  +IIMTDADVDG+HI +LLLTFF+++M +LIE  H++
Sbjct: 469 TLITALGCGIGREEFNVEKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMPELIENGHVY 528

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612
           +  PPLF+I +G +  Y  DE   +  L      G    
Sbjct: 529 IAQPPLFKIKKGKQETYIKDEPALESYLLSQALDGTSLY 567



 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +  K          +++++   K      +I R+KGLGEM   QL ET MD   R +L
Sbjct: 707 IQRNDKKHEISS---FEEVIQWLMKEASRGYQIQRYKGLGEMNPDQLWETTMDPEARRML 763

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG   + R +FI+  A  + ++ 
Sbjct: 764 QVTIEDAI----AADQIFTTLMGDDVEPRRQFIESNALLVSNLD 803


>gi|302524596|ref|ZP_07276938.1| DNA gyrase, B subunit [Streptomyces sp. AA4]
 gi|302433491|gb|EFL05307.1| DNA gyrase, B subunit [Streptomyces sp. AA4]
          Length = 697

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 223/686 (32%), Positives = 332/686 (48%), Gaps = 52/686 (7%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +A   Y A  +  LEGLE VR RPGMYIG TD + ++HLFSEV+DN+ DE +AG+A  I 
Sbjct: 16  TAETLYGADDLTHLEGLEAVRKRPGMYIGSTDSRGINHLFSEVVDNSTDEGVAGHATRIV 75

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+L  +G + V D+GRGIP   H K    S +E++LT LHAGGKF  S Y+ SGGLHGVG
Sbjct: 76  VTLHADGSVQVDDDGRGIPTGVHAK-SGLSGVELVLTRLHAGGKFGGSGYKTSGGLHGVG 134

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR----------------NK 202
            S VNALS    VTV +   +    F+ G+P        K +                 +
Sbjct: 135 ASAVNALSHRFDVTVKQNGKVHQMSFAHGVPGVFDGPGPKAKFTRRSGLNLVGKMKRGER 194

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT I +  D + F   A  D   +    ++ A+L   V        E         +E 
Sbjct: 195 SGTSIRYWYDARYFETGAALDVEGVRTKLRNTAFLVPGVTYVLRTTFE-----DTINEET 249

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTE---------------KKGTHRGTVEWAIA 307
           F+FP GL   +     +             E                       VE A+ 
Sbjct: 250 FHFPNGLADMVDFLAPDSEKPVCGTLMITGEGTYKENAADANGVMQSNVERHAEVEVALR 309

Query: 308 WCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKK---YAELTQNKRAISIISDDLM 363
           W          + NTI    GGTH  G   A+TR ++            +     ++D++
Sbjct: 310 WGTGYERTVECFTNTIRNVHGGTHRRGFDRAVTRALQDAIGKTRGLLKAKEDPPTTEDVL 369

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL--VQNPIEATKLLEW 421
                ++ V + EP+F  QTK +L +    R ++  +      +    +   EA  +L+ 
Sbjct: 370 EGMTAVIHVRLPEPQFTSQTKDELSTAGITRVLQGIVDKQVRAWTEDRKTKSEAKIVLQK 429

Query: 422 VIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
           V++ +  RL +++Q++   RKTA+    +P KL DC       +ELF+VEGDSA GSA+ 
Sbjct: 430 VVDAARVRLTQKQQKDAARRKTALEGAAMPPKLVDCRTTGVSRSELFLVEGDSALGSARM 489

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           AR    QA+LPLRGKILNV  A       N +I  +VQ LG  T   +    +RY +VI+
Sbjct: 490 ARVSEYQALLPLRGKILNVQKASLGDTLKNAEIASIVQVLGAGTGRTFDLSTMRYGRVIL 549

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT---QGTKSVYAHDEEHK 597
           M DADVDG+HI +LL+T F + M  +IE   L+   PPL +IT   +G+++++   +   
Sbjct: 550 MADADVDGSHIRTLLITLFAKYMRPVIEDGRLYAAMPPLHKITTKGRGSETIFTFTQREM 609

Query: 598 QKILEEFKKHGKGKIE-ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
           ++ + E +  GK  +  + RFKGLGEM A +L ET M+   R++ R+ +     +    +
Sbjct: 610 EQKVAELEAAGKQVVTPVPRFKGLGEMDADELWETTMNPATRSVRRITLEDVEAAELALE 669

Query: 657 DSINKLMGTKADERFKFIQERASFID 682
                 MG K + R  ++ E +  +D
Sbjct: 670 LL----MGEKVEPRRNWLVESSDRVD 691


>gi|221068512|ref|ZP_03544617.1| DNA topoisomerase (ATP-hydrolyzing) [Comamonas testosteroni KF-1]
 gi|220713535|gb|EED68903.1| DNA topoisomerase (ATP-hydrolyzing) [Comamonas testosteroni KF-1]
          Length = 656

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 238/666 (35%), Positives = 345/666 (51%), Gaps = 38/666 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
             S+ Y   SIR+L+GLEPV+ RPGMY   T      H+  EVIDNA DE +AGY   I+
Sbjct: 4   KPSNEYSEGSIRVLKGLEPVKQRPGMY---TRTDNPLHILQEVIDNAADEALAGYGKKIK 60

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST---YEISGGLH 155
            ++  +G  +V D+GRGIP   HP+      +E++ T LHAGGKFD      Y  SGGLH
Sbjct: 61  FTIHADGSYSVEDDGRGIPFGLHPE-EKAPVVELVFTRLHAGGKFDKGNGGAYSFSGGLH 119

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDP 213
           GVG+SV NAL+  L V V R   + +  FS G  + PL+ +       K+GT +   PD 
Sbjct: 120 GVGVSVTNALATRLEVQVHRDGQVATLVFSGGDVIEPLKVRPLQAGERKQGTTVRAWPDA 179

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F   +      L+ + +SKA L   V      +K           + + F GGL+ YL
Sbjct: 180 KYFES-SALPMGELVHLLRSKAVLMPGVAVSLINEKSRD-------TQRWQFKGGLRDYL 231

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW----CEENPEITSYCNTILTDEGGT 329
              L    +I      G  +K        E A        +  P   SY N I T  GGT
Sbjct: 232 AQSLHGEPVIPLFEGEGFADKNNDSFAEGEGAAWCVAFTEDGAPLRESYVNLIPTTAGGT 291

Query: 330 HESGLRVALTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           H+SGLR  L + +K + ++     + + ++ DD+   A  +L+  + +P+F GQ K +L 
Sbjct: 292 HDSGLRDGLFQAVKAFIDMHSLLPKGVKLMPDDVFARASYVLNAKVLDPQFQGQIKERLN 351

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR 448
           S DA R V   +R   + +L ++     KL E  I+ ++ R +  ++ E  + + +  L 
Sbjct: 352 SRDAVRLVSGFVRPALELWLNEHVDWGKKLAEIAIKAAQTRQKAGQKVEKRKGSGVAVL- 410

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
            PGKL DC        E+F+VEGDSAGGSAK  R++  QA+LPLRGK+LN      +++ 
Sbjct: 411 -PGKLTDCESKDIAVNEVFLVEGDSAGGSAKMGRDKETQAILPLRGKVLNTWEVDRDRLF 469

Query: 509 NNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
            N +I D+  A+G        E D   LRY K+ I++DADVDG+HI  LLLT F++    
Sbjct: 470 ANNEIHDISVAIGVDPHGPNDEPDLSGLRYGKICILSDADVDGSHIQVLLLTLFFKHFPK 529

Query: 566 LIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKIEISRF 617
           LIE  H+ +  PPLFR+    +G K    VYA D      I+E+  K G  + K ++SRF
Sbjct: 530 LIEAGHIHVALPPLFRVDVPARGKKPAIKVYALDAGELDAIIEKCAKDGVPREKCQVSRF 589

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQE 676
           KGLGEM A QL ET ++ + R LL V+          ++  + KLMG  +A  R + ++ 
Sbjct: 590 KGLGEMNAEQLWETTLNPDTRRLLPVQFMN--MDFAQSEAVVTKLMGKGEAAARRELMEL 647

Query: 677 RASFID 682
               ++
Sbjct: 648 HGDAVE 653


>gi|121893|sp|P13364|GYRB_PSEPU RecName: Full=DNA gyrase subunit B
 gi|45694|emb|CAA38447.1| unnamed protein product [Pseudomonas putida]
          Length = 806

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 225/569 (39%), Positives = 348/569 (61%), Gaps = 18/569 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S +  YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I
Sbjct: 2   SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V +  +  ++V DNGRGIPV+ H K    S  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  TVIIHTDESISVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS++L +TV R   I+ Q +  G+P +P+    +     GT I F+P  + F 
Sbjct: 121 GVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGE-SETTGTHIHFKPSAETFK 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++   
Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGILLKDERSGKE-------EFFKYEGGLRAFVEYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++S++F    +++      VE A+ W +     +  + N I   +GGTH  G R 
Sbjct: 232 TNKTPVNSQVFHFSVQRED--GVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 289

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           +LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 290 SLTRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 349

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPGKL
Sbjct: 350 AVEQEMNKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 409

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 410 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 469

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF++++ +L+E+ ++
Sbjct: 470 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGYI 529

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++  PPL+++ +G +  Y  D+E  ++ +
Sbjct: 530 YIAQPPLYKVKKGKQEQYIKDDEAMEEYM 558



 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             ++ L+        +  I R+KGLGEM   QL ET MD   R +L+V I   +      
Sbjct: 720 EFKEGLDWLMNETTKRHTIQRYKGLGEMNPDQLWETTMDPTVRRMLKVTIEDAI----AA 775

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
               N LMG   + R +FI+  A  + ++ 
Sbjct: 776 DQIFNTLMGDAVEPRREFIESNALSVSNLD 805


>gi|325202956|gb|ADY98410.1| DNA gyrase, B subunit [Neisseria meningitidis M01-240149]
 gi|325207246|gb|ADZ02698.1| DNA gyrase, B subunit [Neisseria meningitidis NZ-05/33]
          Length = 796

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 229/601 (38%), Positives = 339/601 (56%), Gaps = 24/601 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95
            +   + Y A SI++LEGLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V DNGRG+P   HPK   +S  E+I+T LHAGGKFDN++Y+ISGGLH
Sbjct: 62  KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD + +T+ R       +F RG    PL+      +K+GT + F    + 
Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGD-SDKKGTTVRFLASTET 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           FG+   +    L K  +  ++L+  V    + +++        + E F   GG+  ++Q 
Sbjct: 180 FGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
               ++ +  +IF    EK G    +VE A+ W +     +  + N I   +GGTH + L
Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R  +TR I  Y E  +   K  +    DD+      +LSV + +P+F+ QTK KLVS + 
Sbjct: 289 RQVMTRTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEI 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
              V   +      +L +NP EA  +   +++ +  R   RK RE+ R+   +  L LPG
Sbjct: 349 GPVVNEVINQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSA Q R+R  QA+LPL+GKILNV  A  EK+  +Q
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468

Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALG     +    E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ 
Sbjct: 469 EVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPL++   G +  Y  DE  K + L          +  SR      +   +L  
Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVSDSR-----TIEGEELAN 583

Query: 631 T 631
           T
Sbjct: 584 T 584



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%)

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           ++ +G      +D +  +  L+      +  + I R+KGLGEM   QL ET MD   R L
Sbjct: 698 KLYKGDNE---YDIDSFEGALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRL 754

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           L+V I   +       +    LMG + + R  FI+  A    ++  
Sbjct: 755 LKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796


>gi|187923202|ref|YP_001894844.1| DNA topoisomerase IV subunit B [Burkholderia phytofirmans PsJN]
 gi|187714396|gb|ACD15620.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia phytofirmans
           PsJN]
          Length = 661

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 241/674 (35%), Positives = 356/674 (52%), Gaps = 42/674 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +  +  Y  +SI++L+GLEPV+ RPGMY   T  +   H+  EVIDNA DE + GY 
Sbjct: 1   MSTKKPNAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYG 57

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151
             I V+L  +  ++V D+GRGIP   HP+      +EI+ T LHAGGKFD      Y  S
Sbjct: 58  RQITVTLHADHSVSVEDDGRGIPFGLHPE-EGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITF 209
           GGLHGVG+SV NALS  L VTV R   I    F+ G     LE +   +   K GTR+T 
Sbjct: 117 GGLHGVGVSVTNALSTRLDVTVWRDGKIAELSFANGDVAKELEVRPAAKGDKKSGTRVTA 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
             +PK F          L ++ +SKA L   V+     +K         E++ + +  GL
Sbjct: 177 WANPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVTLINEK-------TGEQQTWKYEDGL 228

Query: 270 KTYLQTKLENRSLISSEIFTGKT-------EKKGTHRGTVEWAIAWCEENPEI-TSYCNT 321
           + YL   +    L+       +        E+         W +AW EE   +  SY N 
Sbjct: 229 RGYLLEGMNGSDLLIPLFEGERYAENSRASEETFAEGEGAAWVVAWSEEGTLMRESYVNL 288

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFA 380
           I T  GGTHESGLR  L + +K + EL     + + ++++D+      +LS  + +P+F 
Sbjct: 289 IPTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQ 348

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQ K +L S DA + V +  R   + +L Q+     KL + VI++++ R R  ++ E  +
Sbjct: 349 GQIKERLNSRDAVKLVSSFARPALELWLNQHVELGKKLADLVIKQAQARTRAGQKVEKRK 408

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
            + +  L  PGKL DC        ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN  
Sbjct: 409 SSGVAVL--PGKLTDCESTEIGRNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTW 466

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLLT 557
               +++  N ++ D+  A+G    S   +    +LRY K+ I++DADVDG+HI  LLLT
Sbjct: 467 ETERDRLFANNEVHDISVAIGVDPHSPDDKVDLSNLRYGKICILSDADVDGSHIQVLLLT 526

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--K 609
            F++    LIE+ H+ +  PPLFR+    +G K    +YA DE   + IL++ +K G   
Sbjct: 527 LFFKHFPQLIERGHVCVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDGVRD 586

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KAD 668
            +  ISRFKGLGEM A QL +T M+ + R L  V +         T   +  LMG  +A 
Sbjct: 587 TQWSISRFKGLGEMSAEQLWDTTMNPDTRRLSPVAL--GALDYDATVARMTMLMGKGEAA 644

Query: 669 ERFKFIQERASFID 682
            R  +++E+ + ++
Sbjct: 645 SRRSWLEEKGNEVE 658


>gi|254237753|ref|ZP_04931076.1| DNA gyrase subunit B [Pseudomonas aeruginosa C3719]
 gi|126169684|gb|EAZ55195.1| DNA gyrase subunit B [Pseudomonas aeruginosa C3719]
          Length = 806

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 229/570 (40%), Positives = 348/570 (61%), Gaps = 20/570 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S ++ YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGY + I
Sbjct: 2   SENNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCSEI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            +++  +  +TV DNGRGIPV+ H K    S  E+I+T LHAGGKFD++TY++SGGLHGV
Sbjct: 62  SITIHTDESITVRDNGRGIPVDIH-KEEGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS EL +T+ R N ++ Q +  G+P  PL +  +  +  GT + F+P P+ F 
Sbjct: 121 GVSVVNALSHELRLTIRRHNKVWEQVYHHGVPQFPLREVGET-DGSGTEVHFKPSPETFS 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++         ++E F + GGLK +++   
Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGILLRDER-------TGKEELFKYEGGLKAFVEYLN 231

Query: 278 ENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            N++ ++       + E+ G     VE A+ W +     +  + N I   +GGTH +G R
Sbjct: 232 TNKTAVNEVFHFNVQREEDGV---GVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFR 288

Query: 336 VALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR +  Y E     +        DD       I+SV + +P+F+ QTK KLVS + +
Sbjct: 289 SALTRNLNNYIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVK 348

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGK 452
             VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPGK
Sbjct: 349 TAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGK 408

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +     +EL+IVEGDSAGGSAK  RNR  QA+LPL+GKILNV  A  +K+ ++Q+
Sbjct: 409 LADCQEKDPALSELYIVEGDSAGGSAKHGRNRRTQAILPLKGKILNVEKARFDKMLSSQE 468

Query: 513 IMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF+++M +LIE+ +
Sbjct: 469 VGTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGY 528

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +++  PPL+++ +G +  Y  D++  ++ +
Sbjct: 529 IYIAQPPLYKVKRGKQEQYIKDDQAMEEYM 558



 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 11/106 (10%)

Query: 582 ITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           + +G   + + A  +      L+     G  +  I R+KGLGEM A QL ET MD N R 
Sbjct: 709 VQKGERKRPISAFKDG-----LDWLMAEGTKRHSIQRYKGLGEMNAEQLWETTMDPNVRR 763

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +L+V I   +          N LMG   + R  FI+  A  + ++ 
Sbjct: 764 MLKVTIEDAI----AADQIFNTLMGDAVEPRRDFIESNALAVSNLD 805


>gi|163738140|ref|ZP_02145556.1| DNA gyrase, B subunit [Phaeobacter gallaeciensis BS107]
 gi|163743742|ref|ZP_02151116.1| DNA gyrase subunit B [Phaeobacter gallaeciensis 2.10]
 gi|161383003|gb|EDQ07398.1| DNA gyrase subunit B [Phaeobacter gallaeciensis 2.10]
 gi|161388756|gb|EDQ13109.1| DNA gyrase, B subunit [Phaeobacter gallaeciensis BS107]
          Length = 805

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 224/580 (38%), Positives = 335/580 (57%), Gaps = 16/580 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
             N+ A   Y A SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DN +DE +AG+
Sbjct: 2   SGNEQAPAEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGH 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ + V +  +  ++V DNGRGIPV  H +    S  E+I+T LHAGGKFD+++Y++SGG
Sbjct: 62  ADRVVVKIHADSSVSVNDNGRGIPVGIHEE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALSD L + + R       +F RG     L+      ++ GT + F    
Sbjct: 121 LHGVGVSVVNALSDWLELRIWRDGKEHVARFERGDTAEHLKVVGDCGDQTGTEVRFLAST 180

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
             F +   +    L K  +  A+L+  V+     ++          + E ++ GG+K ++
Sbjct: 181 DTFSNL-EYLFETLEKRLRELAFLNSGVRIILIDER-----PAERLEVELFYEGGVKEFV 234

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +    ++S +         ++       VE A+ W +     +  + N I   +GGTH +
Sbjct: 235 KYLDRSKSPVMEAPIYITGDRDEI---GVEVAMWWNDSYHETVLPFTNNIPQRDGGTHVA 291

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR I  YA+ +    K  +S   DD       +LSV + +P+F+ QTK KLVS 
Sbjct: 292 GFRGALTRTINNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 351

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           + +  VE+ + +    +  +NP +A +++  +IE +  R   RK RE   RKTA+    L
Sbjct: 352 EVRPVVESLVNEKLAEWFEENPNQAKQIVGKIIEAALAREAARKARELTRRKTAMDVNYL 411

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
            GKL DCS+     TE+F+VEGDSAGGSA+  R+R  QA+LPLRGKILNV  A  +++  
Sbjct: 412 AGKLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRMTQAILPLRGKILNVERARFDRMLG 471

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q+I +LV ALG    R ++  + LRY K++IMTDADVDGAHI +LLLTFFY++M +LIE
Sbjct: 472 SQEIGNLVMALGTGIGRDEFNIDKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIE 531

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             +L++  PPL+++++G   VY  D+    + L      G
Sbjct: 532 GGYLYIAQPPLYKVSRGKSEVYLKDQAALDEYLINQGVDG 571



 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 4/86 (4%)

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
           +L+   + G+  + + R+KGLGEM   QL ET +D + RTLL+V +      + +  D  
Sbjct: 723 LLKAILEEGEKGLALQRYKGLGEMNPDQLWETTLDPDARTLLQVRVED----MVEADDLF 778

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
            KLMG   + R +FIQ+ A  ++++ 
Sbjct: 779 TKLMGDVVEPRREFIQKNALSVENLD 804


>gi|56695080|ref|YP_165427.1| DNA gyrase subunit B [Ruegeria pomeroyi DSS-3]
 gi|56676817|gb|AAV93483.1| DNA gyrase, B subunit [Ruegeria pomeroyi DSS-3]
          Length = 805

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 222/570 (38%), Positives = 330/570 (57%), Gaps = 16/570 (2%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANL 96
           +   + Y A SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DN +DE +AG+A+ 
Sbjct: 5   EQPGNEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGHADH 64

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           + V +  +  ++V DNGRGIPV+ H +    S  E+I+T LHAGGKFD+++Y++SGGLHG
Sbjct: 65  VTVKIHADSSVSVADNGRGIPVDIHAE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGGLHG 123

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+SVVNALSD L + + R       +F RG  +  L    +  ++ GT + F      F
Sbjct: 124 VGVSVVNALSDWLELRIWRHGKEHVARFERGDTVEHLRVVGECGDRTGTEVRFLASTTTF 183

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   +    L K  +  A+L+  V+     ++              ++ GG++ +++  
Sbjct: 184 SNL-DYVFETLEKRLRELAFLNSGVRIILIDERPAERIETE-----LFYEGGVREFVKYL 237

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
             ++S +       K E+       VE A+ W +     +  + N I   +GGTH +G R
Sbjct: 238 DRSKSPVMPAPIYFKGERDDI---GVEIAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFR 294

Query: 336 VALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR I  YA+ +   +   I+   DD       +LSV + +P+F+ QTK KLVS + +
Sbjct: 295 GALTRTINNYAQSSGIAKREKINFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVR 354

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
             VEN + +    +  +NP  A +++  +IE +  R   RK RE   RKTA+    L GK
Sbjct: 355 PAVENLVNEKLAEWFEENPNVAKQIVGKIIEAALAREAARKARELTRRKTAMDVNYLAGK 414

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L DCS+     TE+F+VEGDSAGGSA+  R+R  QAVLPLRGKILNV  A  +++  +Q+
Sbjct: 415 LKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRRTQAVLPLRGKILNVERARFDRMLGSQE 474

Query: 513 IMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           I +LV ALG    R ++    LRY K++IMTDADVDGAHI +LLLTFFY++M +LIE  +
Sbjct: 475 IGNLVMALGTGIGRDEFNISKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIEGGY 534

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           L++  PPL+++ +G   VY  D+      L
Sbjct: 535 LYIAQPPLYKVARGKSEVYLKDQAALDDYL 564



 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L+     G+  + + R+KGLGEM   QL ET +D + RTLL+V +N     + +  D 
Sbjct: 722 TLLKAILDEGEKGLTLQRYKGLGEMNPEQLWETTLDPDARTLLQVRVND----MVEADDI 777

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R +FIQ+ A  ++++ 
Sbjct: 778 FTKLMGDSVEPRREFIQQNALSVENLD 804


>gi|19909691|dbj|BAB87041.1| DNA gyrase subunit B [Halobacterium salinarum]
          Length = 575

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 224/588 (38%), Positives = 338/588 (57%), Gaps = 18/588 (3%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
           D + LHHL  EV+DN++DE +AGY + I+V+L  +G ++V D+GRGIPV  H ++ ++  
Sbjct: 1   DARGLHHLVYEVVDNSIDEALAGYCDRIDVTLHDDGSVSVTDDGRGIPVATHEEY-DRPA 59

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
           +E+ILT LHAGGKFD  +Y++SGGLHGVG+SVVNALS+ L V V+R    + ++F RG P
Sbjct: 60  VEVILTVLHAGGKFDAKSYQVSGGLHGVGVSVVNALSERLAVEVSRDGARYREQFERGEP 119

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
           ++ L+      +  GT I FRPD +IF     +D + L    +  A+L+  V+   + ++
Sbjct: 120 VTDLQHVGD-SDDSGTLIRFRPDSEIFETT-AYDFSTLENRLRELAFLNSGVEITLTDER 177

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA-W 308
                   P +  F + GG++ +++   E R+ +  ++   + E  G    +VE A+   
Sbjct: 178 -----GDEPTQSTFEYEGGIREFVEYLNETRNALHDDVIYFQGEDDGI---SVEIAMQAS 229

Query: 309 CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK---RAISIISDDLMIS 365
            +      ++ N I T EGGTH +G + ALTR +  YA            ++  DD+   
Sbjct: 230 EDVQSSTHAFANNINTREGGTHLTGFKTALTRTVNDYANDNNLLSELDGENLTGDDIREG 289

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              ++SV   +P+F GQTKTKL + + +  VE A+ D    Y  +NP  A  ++   +E 
Sbjct: 290 LTAVISVKHPDPQFEGQTKTKLGNSEVRGIVERAVNDGLGTYFEENPATAKAVVRTAVEA 349

Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           ++ R   +K  E   RK+A+    LPGKLADC        ELF+VEGDSAGGSAKQ RN 
Sbjct: 350 AKARKAAKKAEELTRRKSALGSTSLPGKLADCQSKAPEDAELFVVEGDSAGGSAKQGRNP 409

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA+LPL GKILNV     ++I  + ++  ++ ALG     ++  ++LRYE +I+MTDA
Sbjct: 410 GFQAILPLGGKILNVEKHRLDRILEHDELRHIITALGTGIGDEFDIDELRYENIIMMTDA 469

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           DVDGAHI +LLLTFFY+ M  L+E  +++   PPL+RI     +  A  E  +++I+EE 
Sbjct: 470 DVDGAHIRTLLLTFFYRHMKPLLEAGYVYAAQPPLYRIRYRGNTYDAMTEADRERIVEEQ 529

Query: 605 KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652
                   ++ RFKGLGEM   QL +T MD   R L R+ +     + 
Sbjct: 530 CNGNPT--QVQRFKGLGEMNPQQLWDTTMDPENRILKRITVEDAAAAD 575


>gi|325275335|ref|ZP_08141286.1| DNA gyrase subunit B [Pseudomonas sp. TJI-51]
 gi|324099526|gb|EGB97421.1| DNA gyrase subunit B [Pseudomonas sp. TJI-51]
          Length = 806

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 224/569 (39%), Positives = 347/569 (60%), Gaps = 18/569 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S +  YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I
Sbjct: 2   SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V +  +  ++V DNGRGIPV+ H K    S  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  TVIIHPDESISVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS++L +TV R   I+ Q +  G+P +P+          GT I F+P  + F 
Sbjct: 121 GVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGD-SETTGTHIHFKPSAETFK 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++   
Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGILLKDERSGKE-------EFFKYEGGLRAFVEYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ +++++F    +++      VE A+ W +     +  + N I   +GGTH  G R 
Sbjct: 232 TNKTPVNNQVFHFNVQRED--GVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 289

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           +LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 290 SLTRSLNNYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 349

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPGKL
Sbjct: 350 AVEQEMNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 409

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 410 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 469

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF++++ +L+E+ ++
Sbjct: 470 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGYI 529

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++  PPL+++ +G +  Y  D+E  ++ +
Sbjct: 530 YIAQPPLYKVKRGKQEQYIKDDEAMEEYM 558



 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             ++ L+        +  I R+KGLGEM   QL ET MD   R +L+V I   +      
Sbjct: 720 EFKEALDWLMNESTKRHTIQRYKGLGEMNPEQLWETTMDPTVRRMLKVTIEDAI----AA 775

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
               N LMG   + R  FI+  A  + ++ 
Sbjct: 776 DQIFNTLMGDAVEPRRDFIESNALSVSNLD 805


>gi|325141053|gb|EGC63556.1| DNA gyrase, B subunit [Neisseria meningitidis CU385]
          Length = 796

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 229/601 (38%), Positives = 340/601 (56%), Gaps = 24/601 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95
            +   + Y A SI++LEGLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V DNGRG+P   HPK   +S  E+I+T LHAGGKFDN++Y+ISGGLH
Sbjct: 62  KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD + +T+ R       +F RG    PL+      +K+GT + F    + 
Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGD-SDKKGTTVRFLASTET 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           FG+   +    L K  +  ++L+  V    + +++        + E F   GG+  ++Q 
Sbjct: 180 FGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
               ++ +  +IF    EK G    +VE A+ W +     +  + N I   +GGTH + L
Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R  +TR I  Y E  +   K  +    DD+      +LSV + +P+F+ QTK KLVS + 
Sbjct: 289 RQVMTRTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEI 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
              V   +      +L +NP EA  +   +++ +  R   RK RE+ R+   +  L LPG
Sbjct: 349 GPVVNEVISQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSA Q R+R  QA+LPL+GKILNV  A  EK+  +Q
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468

Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALG     +    E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ 
Sbjct: 469 EVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPL++   G +  Y  DE  K + L          I   R      +  ++L +
Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIISDGR-----TIEGAELAD 583

Query: 631 T 631
           T
Sbjct: 584 T 584



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 10/108 (9%)

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L++   G      +D +  +  L+      +  + I R+KGLGEM   QL ET MD   R
Sbjct: 699 LYKGENG------YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVR 752

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
            LL+V I   +       +    LMG + + R  FI+  A    ++  
Sbjct: 753 RLLKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796


>gi|114762139|ref|ZP_01441607.1| DNA gyrase subunit B [Pelagibaca bermudensis HTCC2601]
 gi|114545163|gb|EAU48166.1| DNA gyrase subunit B [Roseovarius sp. HTCC2601]
          Length = 805

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 229/580 (39%), Positives = 333/580 (57%), Gaps = 16/580 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
                A   Y A SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DN +DE +AG+
Sbjct: 2   AEPAGAPQEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGH 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ + V +  +  ++V DNGRGIPV+ H +    S  E+I+T LHAGGKFD ++Y++SGG
Sbjct: 62  ADFVRVKIHADNSVSVRDNGRGIPVDMHAE-EGVSAAEVIMTQLHAGGKFDQNSYKVSGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS  L + + R       KFS G  +  L        ++GT + F    
Sbjct: 121 LHGVGVSVVNALSVWLELRIWRNGKEHYAKFSHGETVEHLRVVGDAEGEQGTEVRFLAST 180

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           + F +   F+ A L K  +  A+L+  V+     ++        P   E ++ GG+K ++
Sbjct: 181 ETFSNL-DFEFATLEKRLRELAFLNSGVRIILEDER-----PAEPLHTELHYEGGVKEFV 234

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHES 332
           +    ++  +  E      EK G     VE A+ W +   E+   + N I   +GGTH +
Sbjct: 235 KYLDRSKQPMMPEPIYMTGEKDGI---GVEVAMWWNDSYNEMVLPFTNNIPQRDGGTHMA 291

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR + +YA  +    K  +S   DD       +LSV + +P+F+ QTK KLVS 
Sbjct: 292 GFRGALTRTLTRYATDSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 351

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           + +  VEN + +    +  ++P EA  ++  ++E +  R   RK RE   RK  +    L
Sbjct: 352 EVRPAVENLVNEKLTEWFEEHPNEAKMVVGKIVEAALAREAARKARELTRRKNPMDVNFL 411

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
            GKL DCS+     TELFIVEGDSAGGSA+  R+R  QA+LPL+GKILNV  A  +++  
Sbjct: 412 AGKLKDCSEKDPSKTELFIVEGDSAGGSAQTGRDRGTQAILPLKGKILNVERARFDRMLG 471

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q+I +LV ALG    R ++  + LRY K+I+MTDADVDGAHI +LLLTFFY++M +LIE
Sbjct: 472 SQEIGNLVMALGTGIGRDEFNIDKLRYHKIILMTDADVDGAHIRTLLLTFFYRQMPELIE 531

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             +L++  PPLF++ +G   VY  D+      L +    G
Sbjct: 532 GGYLYIAQPPLFKVARGRSEVYVKDQAALDDYLIQQGVDG 571



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 4/86 (4%)

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
           +LE   + G+  + + R+KGLGEM   QL ET +D + RTLL+V ++     + +  D  
Sbjct: 723 LLEAILEEGEKGLSLQRYKGLGEMNPGQLWETTLDPDARTLLQVRVDD----MTEADDIF 778

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
            KLMG   + R +FIQ+ A  ++++ 
Sbjct: 779 TKLMGDVVEPRREFIQQNALSVENLD 804


>gi|218767099|ref|YP_002341611.1| DNA gyrase subunit B [Neisseria meningitidis Z2491]
 gi|121051107|emb|CAM07377.1| DNA gyrase subunit B [Neisseria meningitidis Z2491]
          Length = 796

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 229/601 (38%), Positives = 340/601 (56%), Gaps = 24/601 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95
            +   + Y A SI++LEGLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V DNGRG+P   HPK   +S  E+I+T LHAGGKFDN++Y+ISGGLH
Sbjct: 62  KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD + +T+ R       +F RG    PL+      +K+GT + F    + 
Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGD-SDKKGTTVRFLASTET 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           FG+   +    L K  +  ++L+  V    + +++        + E F   GG+  ++Q 
Sbjct: 180 FGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
               ++ +  +IF    EK G    +VE A+ W +     +  + N I   +GGTH + L
Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R  +TR I  Y E  +   K  +    DD+      +LSV + +P+F+ QTK KLVS + 
Sbjct: 289 RQVMTRTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEI 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
              V   +      +L +NP EA  +   +++ +  R   RK RE+ R+   +  L LPG
Sbjct: 349 GPVVNEVISQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSA Q R+R  QA+LPL+GKILNV  A  EK+  +Q
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468

Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALG     +    E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ 
Sbjct: 469 EVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPL++   G +  Y  DE  K + L          I   R      +  ++L +
Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIISDGR-----TIEGAELAD 583

Query: 631 T 631
           T
Sbjct: 584 T 584



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 10/108 (9%)

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L++   G      +D +  +  L+      +  + I R+KGLGEM   QL ET MD   R
Sbjct: 699 LYKGENG------YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVR 752

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
            LL+V I   +       +    LMG + + R  FI+  A    ++  
Sbjct: 753 RLLKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796


>gi|254670128|emb|CBA05114.1| DNA gyrase subunit B [Neisseria meningitidis alpha153]
          Length = 796

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 229/601 (38%), Positives = 340/601 (56%), Gaps = 24/601 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95
            +   + Y A SI++LEGLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V DNGRG+P   HPK   +S  E+I+T LHAGGKFDN++Y+ISGGLH
Sbjct: 62  KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD + +T+ R       +F RG    PL+      +K+GT + F    + 
Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGD-SDKKGTTVRFLASTET 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           FG+   +    L K  +  ++L+  V    + +++        + E F   GG+  ++Q 
Sbjct: 180 FGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
               ++ +  +IF    EK G    +VE A+ W +     +  + N I   +GGTH + L
Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R  +TR I  Y E  +   K  +    DD+      +LSV + +P+F+ QTK KLVS + 
Sbjct: 289 RQVMTRTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEI 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
              V   +      +L +NP EA  +   +++ +  R   RK RE+ R+   +  L LPG
Sbjct: 349 GPVVNEVINQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSA Q R+R  QA+LPL+GKILNV  A  EK+  +Q
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468

Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALG     +    E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ 
Sbjct: 469 EVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPL++   G +  Y  DE  K + L          I   R      +  ++L +
Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIISDGR-----TIEGAELAD 583

Query: 631 T 631
           T
Sbjct: 584 T 584



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 10/108 (9%)

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L++   G      +D +  +  L+      +  + I R+KGLGEM   QL ET MD   R
Sbjct: 699 LYKGENG------YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVR 752

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
            LL+V I   +       +    LMG + + R  FI+  A    ++  
Sbjct: 753 RLLKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796


>gi|319761821|ref|YP_004125758.1| DNA topoisomerase (ATP-hydrolyzing) [Alicycliphilus denitrificans
           BC]
 gi|330826319|ref|YP_004389622.1| DNA topoisomerase [Alicycliphilus denitrificans K601]
 gi|317116382|gb|ADU98870.1| DNA topoisomerase (ATP-hydrolyzing) [Alicycliphilus denitrificans
           BC]
 gi|329311691|gb|AEB86106.1| DNA topoisomerase (ATP-hydrolyzing) [Alicycliphilus denitrificans
           K601]
          Length = 658

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 244/668 (36%), Positives = 349/668 (52%), Gaps = 38/668 (5%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
             S++  Y   SIR+L+GLEPV+ RPGMY   T      H+  EV+DNA DE +AGY   
Sbjct: 4   KPSSASAYSEGSIRVLKGLEPVKQRPGMY---TRTDNPLHIVQEVLDNAADEALAGYGKK 60

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGG 153
           I+V+L  +G ++V D+GRGIP   HP+      +E++ T LHAGGKFD      Y  SGG
Sbjct: 61  IKVTLHEDGSVSVEDDGRGIPFGLHPE-EGAPVVELVFTRLHAGGKFDKGQGGAYSFSGG 119

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR--GTRITFRP 211
           LHGVG+SV NALS  L V+  R+  I    F+ G    PL  +     +R  GT +   P
Sbjct: 120 LHGVGVSVTNALSTRLEVSTHREGQIARLAFAAGDVAEPLLARPLAAGERRQGTTVRVWP 179

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           D K F   A      L  + +SKA L   V      +K          ++ + + GGL  
Sbjct: 180 DAKYFES-AQLPMGELTHLLRSKAVLMPGVSVSLVNEKTRD-------QQAWQYKGGLAD 231

Query: 272 YLQTKLENRSLIS---SEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEG 327
           YL   L    +I     E F               WA+A+ EE      SY N I T  G
Sbjct: 232 YLAQSLPADPVIPLFSGEGFADAGHDSFAEGEGAAWAVAFTEEGSPVRESYVNLIPTSAG 291

Query: 328 GTHESGLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           GTH+SGLR  L + +K + E      + + ++ +D+   A  +LS  + +P+F GQ K +
Sbjct: 292 GTHDSGLRDGLFQAVKGFIELHALLPKGVKLLPEDVFARASYVLSAKVLDPQFQGQIKER 351

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L S DA R V + +R   + +L Q+     +L E  I+ ++ R R  ++ E  + + +  
Sbjct: 352 LNSRDAVRLVSSFVRPALELWLNQHVDYGKRLAELAIKAAQTRQRAGQKVEKKKGSGVAV 411

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
           L  PGKL DC        E+F+VEGDSAGGSAK  R++  QA+LPLRGK+LN      + 
Sbjct: 412 L--PGKLTDCESRDTAYNEVFLVEGDSAGGSAKMGRDKETQAILPLRGKVLNTWEVERDL 469

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +  N ++ D+  A+G      +   D   LRY KV I++DADVDGAHI  LLLT F++  
Sbjct: 470 LFRNNEVHDISVAIGVDPHGPHDSPDLSGLRYGKVCILSDADVDGAHIQVLLLTLFFRHF 529

Query: 564 YDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKIEIS 615
             LIE   +++  PPL+R+    +G K    +YA DE   + IL++  K G  + K +IS
Sbjct: 530 PRLIEAGRIYVARPPLYRVDVPARGKKPAAKLYALDEGELEAILDKAAKDGVPREKCQIS 589

Query: 616 RFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFI 674
           RFKGLGEM A QL ET ++ + R LL V++         T+  I KLMG  +A  R + +
Sbjct: 590 RFKGLGEMNAEQLWETTLNPDTRRLLPVQL--GALDFAATEGLITKLMGKGEAASRRELM 647

Query: 675 QERASFID 682
           +     ++
Sbjct: 648 ELHGDAVE 655


>gi|116249778|ref|YP_765616.1| DNA gyrase subunit B [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254426|emb|CAK05500.1| putative DNA gyrase subunit B [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 811

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 234/577 (40%), Positives = 341/577 (59%), Gaps = 16/577 (2%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEV 89
              +      S  Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE 
Sbjct: 2   SDTSATENGVSTEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEA 61

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
           +AG+A+++ V+L+ +G +TV DNGRGIP + H      S  E+I+T LHAGGKFD ++Y+
Sbjct: 62  LAGHADIVTVTLNPDGSVTVTDNGRGIPTDIH-TGEGVSAAEVIMTQLHAGGKFDQNSYK 120

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  L + + R + I    F+ G+  +PL+      N+ GT ++F
Sbjct: 121 VSGGLHGVGVSVVNALSVWLKLKIRRHDKIHEMSFTHGVADAPLKVTGDAPNETGTEVSF 180

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P    F     FD   L    +  A+L+  V+   +  +    K     +EE  + GGL
Sbjct: 181 MPSTDTFT-MTEFDYGTLEHRLRELAFLNSGVRILLTDKRHSDIK-----QEELRYDGGL 234

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328
           + ++      +  +  +      EK G    TVE A+ W +   E    + N I   +GG
Sbjct: 235 EAFVAYLDRAKKSLVDKPVAIHGEKDGI---TVEVAMWWNDSYHENVLCFTNNIPQRDGG 291

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  YA+ +   +   +    +D       +LSV + +P+F+ QTK K
Sbjct: 292 THMAGFRAALTRQVVSYADSSGITKREKVTLQGEDCREGLTAVLSVKVPDPKFSSQTKDK 351

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           LVS + +  VE+ + +  + +  ++P EA  L+  V+E +  R   RK RE   RK A+ 
Sbjct: 352 LVSSEVRPVVESLVNEALNTWFEEHPSEAKILVGKVVEAAAAREAARKARELTRRKGALD 411

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS+     +E+F+VEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  +
Sbjct: 412 IASLPGKLADCSERDPTKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 471

Query: 506 KIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           K+ ++Q+I  L+ ALG          E LRY K+IIMTDADVDGAHI +LLLTFF+++M 
Sbjct: 472 KMLSSQEIGTLITALGTGIGKDEFNVEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 531

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
            LIE+ HL++  PPL+++++G    Y  DE+  ++ L
Sbjct: 532 QLIERGHLYIAQPPLYKVSRGKSVQYLKDEKALEEYL 568



 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 4/88 (4%)

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           + +L+     G+  + + R+KGLGEM A QL ET +D N R+LL+V +N       D   
Sbjct: 727 RALLDAIFASGRKGLTMQRYKGLGEMNAEQLWETTLDPNVRSLLQVRVNDAT----DADG 782

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
              +LMG + + R +FIQ+ A  + ++ 
Sbjct: 783 LFARLMGDEVEPRREFIQDNALSVANLD 810


>gi|117923324|ref|YP_863941.1| DNA gyrase subunit B [Magnetococcus sp. MC-1]
 gi|117607080|gb|ABK42535.1| DNA gyrase subunit B [Magnetococcus sp. MC-1]
          Length = 812

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 225/585 (38%), Positives = 349/585 (59%), Gaps = 19/585 (3%)

Query: 30  PDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDE 88
               A   Q     YD+++I++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE
Sbjct: 2   TTENAPEAQHDHSTYDSTNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDE 61

Query: 89  VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148
            +AG+ + +EV L  +G  +V DNGRGIP + H K   +S  E+I+T LHAGGKFD+++Y
Sbjct: 62  ALAGHCDRVEVILHTDGSCSVSDNGRGIPTDMH-KEEGRSAAEVIMTVLHAGGKFDDNSY 120

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           +ISGGLHGVG+SVVNALS+ L +T+ R   +  Q +  G P +PL       +  GT + 
Sbjct: 121 KISGGLHGVGVSVVNALSETLELTIKRGGKVCHQTYHLGEPTAPLAVIGDTPD-SGTTVR 179

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F+P P IF +   F    L +  +  ++L+  V+     +++        +   F++ GG
Sbjct: 180 FKPSPLIFHNVLEFSFDTLSQRLRELSFLNDGVRIFIHDERD-------DKSHNFFYEGG 232

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           ++++++   + R+ +   I      +   +  T E A+ W +     +  + N I   +G
Sbjct: 233 IRSFVEYLNKARTPLMPPIHF----RDERNGITAEVALQWNDSYQENVYCFTNNIPQRDG 288

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH +G R ALTR I  YA       K  ++I  DD       ++SV + +P+F+ QTK 
Sbjct: 289 GTHLAGFRGALTRTINNYASANNLLKKEKVTISGDDCREGLTAVISVKVPDPKFSSQTKD 348

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAI 444
           KLVS + +  VE+ + +    +  ++P EA  ++ + V   +     R+ +    RK+A+
Sbjct: 349 KLVSSEVRPVVESVIGESLGTFFEEHPAEAKAIIAKSVEAANAREAARKARELTRRKSAL 408

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC +      EL++VEGDSAGGSAKQAR+R +QAVLPL+GKILNV  A  
Sbjct: 409 EISSLPGKLADCQERDPAKCELYLVEGDSAGGSAKQARDRKHQAVLPLKGKILNVEKARF 468

Query: 505 EKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +K+ ++Q++  L+ ALG    R +Y  E LRY  +IIMTDADVDGAHI +LLLTFFY++M
Sbjct: 469 DKMISSQEVGTLITALGTGIGREEYNIEKLRYHHIIIMTDADVDGAHIRTLLLTFFYRQM 528

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
            +++++ HL++  PPL+R+++G +  Y  D++   ++L  +  HG
Sbjct: 529 PEIVKRGHLYIAQPPLYRVSKGKQEQYLKDDDALNQLLMNYGLHG 573



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
             L+     G+  + I R+KGLGEM   QL ET MD + RTLL+V ++ ++       + 
Sbjct: 729 DFLQLVLDEGRRGLTIQRYKGLGEMNPDQLWETTMDPSVRTLLQVRVDDEVG----ANEV 784

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
              LMG   + R  FIQE A  + ++ 
Sbjct: 785 FTTLMGDVVEPRRDFIQENALNVTNLD 811


>gi|77163566|ref|YP_342091.1| DNA gyrase, B subunit [Nitrosococcus oceani ATCC 19707]
 gi|254435249|ref|ZP_05048756.1| DNA gyrase, B subunit [Nitrosococcus oceani AFC27]
 gi|76881880|gb|ABA56561.1| DNA gyrase subunit B [Nitrosococcus oceani ATCC 19707]
 gi|207088360|gb|EDZ65632.1| DNA gyrase, B subunit [Nitrosococcus oceani AFC27]
          Length = 807

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 229/581 (39%), Positives = 349/581 (60%), Gaps = 19/581 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
            AS  YD+S I++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ N I
Sbjct: 2   KASTAYDSSHIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGFCNEI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            + +  +  +T+ DNGRGIP + H +   +S  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  SIIIHSDDSITISDNGRGIPTDIHQE-EGRSAAEVIMTVLHAGGKFDHNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS  L + + R   I+ Q +  G+P  PL        + GT I F P PKIF 
Sbjct: 121 GVSVVNALSAVLFLEIHRDGKIYQQHYQEGVPQGPLVAVG-TTERSGTTIRFSPSPKIFS 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F      K  +  A+L+ RV+     ++       I  KEEF++ GG+  +++   
Sbjct: 180 NIV-FSFDIFAKRLRELAFLNSRVRILLEDER-------IGRKEEFFYEGGISAFVEHLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           +N++ +   +F  + E+ G     VE A+ W +        + N I   +GGTH +G R 
Sbjct: 232 KNKTPLHGNVFYFQGERDGV---AVELAMQWNDSYQEHFFCFTNNIPQRDGGTHLAGFRS 288

Query: 337 ALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR + +Y E     +        DD       +LS+  ++P+F+ QTK KLVS + + 
Sbjct: 289 ALTRTLNQYIEKEALAKKTKVGTTGDDAREGLTAVLSIKAQDPKFSSQTKEKLVSSEVKP 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            V++ + + F ++L+++P++A  +   +IE +  R   RK RE   RK A+    LPGKL
Sbjct: 349 VVDSLVSEHFQNFLLEHPVDAKAIGGKMIEAARAREAARKARELTRRKGALDMAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +ELF+VEGDSAGGSAKQ R+R NQA+LPL+GKILNV  A  +K+ ++ ++
Sbjct: 409 ADCQERDPTLSELFLVEGDSAGGSAKQGRDRRNQAILPLKGKILNVEKARFDKMLSSVEV 468

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC   R +Y  + LRY ++IIMTDADVDG+HI +LLLTFFY++M +L+E+ H+
Sbjct: 469 ATLITALGCGIGREEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELVERGHI 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613
           ++  PPL+++ +G +  Y  D+   ++ L            
Sbjct: 529 YIAQPPLYKVKRGKQEQYIRDDAEMERYLINLSTDNAKIYS 569



 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G +    +D +     L E  + G+    + R+KGLGEM   QL ET M+   R L 
Sbjct: 710 VQRGDRRQLVNDIQEAVDWLMEEARRGQA---VQRYKGLGEMNPDQLWETTMNPATRRLS 766

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I+  +       +    LMG   + R  FI+  A  +  + 
Sbjct: 767 QVRIDDVIT----ADEIFTTLMGDHVEPRRDFIESHALSVAHLD 806


>gi|104779320|ref|YP_605818.1| DNA gyrase subunit B [Pseudomonas entomophila L48]
 gi|95108307|emb|CAK13001.1| DNA gyrase, subunit B [Pseudomonas entomophila L48]
          Length = 806

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 225/569 (39%), Positives = 347/569 (60%), Gaps = 18/569 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S +  YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I
Sbjct: 2   SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V +  +  ++V DNGRGIPV+ H K    S  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  TVIIHTDESISVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS++L +TV R   I+ Q +  G+P +P+    +     GT I F+P  + F 
Sbjct: 121 GVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGE-SETTGTHIHFKPSAETFK 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++   
Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGILLKDERSGKE-------EFFKYEGGLRAFVEYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++S++F    ++       VE A+ W +     +  + N I   +GGTH  G R 
Sbjct: 232 TNKTPVNSQVFHFNVQRDD--GVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 289

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           +LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 290 SLTRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 349

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPGKL
Sbjct: 350 AVEQEMNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 409

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 410 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 469

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF++++ +L+E+ ++
Sbjct: 470 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGYI 529

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++  PPL+++ +G +  Y  D+E  ++ +
Sbjct: 530 YIAQPPLYKVKKGKQEQYIKDDEAMEEYM 558



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             ++ L+        +  I R+KGLGEM   QL ET MD   R +L+V I   +      
Sbjct: 720 EFKEGLDWLMNESTKRHTIQRYKGLGEMNPDQLWETTMDPTVRRMLKVTIEDAI----AA 775

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
               N LMG   + R  FI+  A  + ++ 
Sbjct: 776 DQLFNTLMGDAVEPRRDFIESNALSVSNLD 805


>gi|241759142|ref|ZP_04757250.1| DNA gyrase, B subunit [Neisseria flavescens SK114]
 gi|241320561|gb|EER56838.1| DNA gyrase, B subunit [Neisseria flavescens SK114]
          Length = 796

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 225/566 (39%), Positives = 332/566 (58%), Gaps = 19/566 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + Y A SI++LEGLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ + I V+
Sbjct: 7   EEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCDKITVT 66

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  ++V DNGRG+P   HPK   +S  E+I+T LHAGGKFDN++Y+ISGGLHGVG+S
Sbjct: 67  IHADNSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLHGVGVS 125

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALSD + +T+ R       +F RG    PL       +K+GT + F    + FG+  
Sbjct: 126 VVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLRVVGD-SDKKGTTVRFLASVETFGNV- 183

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +    L K  +  ++L+  V    + +++        + E F   GG+  ++Q     +
Sbjct: 184 EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQYMNRKK 236

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + +  +IF    EK G    +VE A+ W +     +  + N I   +GGTH + LR  +T
Sbjct: 237 TPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMT 293

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y E  +   K  +    DD+      +LSV + +P+F+ QTK KLVS +    V 
Sbjct: 294 RTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVN 353

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADC 456
             +      +L +NP EA  +   +++ +  R   RK RE+ R+   +  L LPGKLADC
Sbjct: 354 EVINQALTDFLEENPTEAKIITSKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADC 413

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            +     +EL++VEGDSAGGSA Q R+R  QA+LPL+GKILNV  A  EK+  +Q++  L
Sbjct: 414 QEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATL 473

Query: 517 VQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           + ALG    + ++  E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ ++++ 
Sbjct: 474 ITALGTGIGKEEFNTEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIA 533

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKIL 601
            PPL++   G +  Y  DE  K + L
Sbjct: 534 QPPLYKAKYGKQERYLKDELEKDQWL 559



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%)

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           ++ +G      +D +  +  L+      +  + I R+KGLGEM   QL ET MD   R L
Sbjct: 698 KLYKGDNE---YDIDSFEGALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPTVRRL 754

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           L+V I   +       +    LMG + + R  FI+  A    ++  
Sbjct: 755 LKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALLAQNIDA 796


>gi|262380670|ref|ZP_06073823.1| DNA gyrase, B subunit [Acinetobacter radioresistens SH164]
 gi|262297618|gb|EEY85534.1| DNA gyrase, B subunit [Acinetobacter radioresistens SH164]
          Length = 822

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 225/581 (38%), Positives = 342/581 (58%), Gaps = 19/581 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85
                S +    +    YD+SSI++L GL+ VR RPGMYIG TD+   LHH+  EV+DN+
Sbjct: 2   SSESQSASPTEHTQEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNS 61

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AG+ + I V++  +  ++V DNGRGIP + HP+    S  E+ILT LHAGGKFD+
Sbjct: 62  IDEALAGHCDEILVTIHEDESVSVSDNGRGIPTDIHPE-EGVSAAEVILTILHAGGKFDD 120

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +L +TV R   I  Q++  G+P  PL    +   + GT
Sbjct: 121 NSYKVSGGLHGVGVSVVNALSSKLELTVQRAGQIHEQEYQHGVPQYPLRVVGQT-ERTGT 179

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           ++ F P  + F     F+   L +  +  ++L+  V+     ++   E         F +
Sbjct: 180 KVRFWPSAETFSQTI-FNVDILARRLRELSFLNAGVRIVLCDERINLE-------HVFDY 231

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GGL  +++   E ++ ++         + G     VE A+ W +     +  + N I  
Sbjct: 232 EGGLSEFVKYINEGKNHLNEIFHFTTQAENGI---GVEVALQWNDSYQENVRCFTNNIPQ 288

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTRG+  Y E      K  +++  DD       I+SV + +P+F+ Q
Sbjct: 289 KDGGTHLAGFRAALTRGLNSYLENENILKKEKVAVTGDDAREGLTAIVSVKVPDPKFSSQ 348

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441
           TK KLVS + +  VE A+   F  YL++NP  A  +   +I+ +  R   RK      RK
Sbjct: 349 TKEKLVSSEVKPAVEQAMNKAFSEYLLENPAAAKSIAGKIIDAARARDAARKAREMTRRK 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           +A+    LPGKLADC +     +ELF+VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  
Sbjct: 409 SALDIAGLPGKLADCQEKDPALSELFLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +++ ++ ++  L+ ALGC   R +Y  + LRY K++IMTDADVDG+HI +LLLTFF+
Sbjct: 469 ARFDRMISSAEVGTLITALGCGIGREEYNPDKLRYHKIVIMTDADVDGSHIRTLLLTFFF 528

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++M +L+E+ H+++  PPL+++ +G +  Y  D +  +  L
Sbjct: 529 RQMPELVERGHIYIAQPPLYKLKKGKQEQYIKDNDALETYL 569



 Score =  133 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 17/126 (13%)

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           +  + LIE+   +L         +G + V   +     ++ +   +  +  + I R+KGL
Sbjct: 714 RSWFSLIEEG-AYL--------EKGERRVQVSN---FHQVWQFILQDSRRGMMIQRYKGL 761

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GEM A QL ET MD   R +L+V I+  +    +     + LMG   + R  FI+E A  
Sbjct: 762 GEMNAEQLWETTMDPENRNMLQVTIDDAI----EADRMFSCLMGDDVEPRRAFIEENALN 817

Query: 681 IDDVGT 686
            D +  
Sbjct: 818 AD-IDA 822


>gi|255320699|ref|ZP_05361876.1| DNA gyrase, B subunit [Acinetobacter radioresistens SK82]
 gi|255302315|gb|EET81555.1| DNA gyrase, B subunit [Acinetobacter radioresistens SK82]
          Length = 822

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 225/581 (38%), Positives = 342/581 (58%), Gaps = 19/581 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85
                S +    +    YD+SSI++L GL+ VR RPGMYIG TD+   LHH+  EV+DN+
Sbjct: 2   SSESQSASPTEHTQEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNS 61

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AG+ + I V++  +  ++V DNGRGIP + HP+    S  E+ILT LHAGGKFD+
Sbjct: 62  IDEALAGHCDEILVTIHEDESVSVSDNGRGIPTDIHPE-EGVSAAEVILTILHAGGKFDD 120

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +L +TV R   I  Q++  G+P  PL    +   + GT
Sbjct: 121 NSYKVSGGLHGVGVSVVNALSSKLELTVQRAGQIHEQEYQHGVPQYPLRVVGQT-ERTGT 179

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           ++ F P  + F     F+   L +  +  ++L+  V+     ++   E         F +
Sbjct: 180 KVRFWPSAETFSQTI-FNVDILARRLRELSFLNAGVRIVLCDERINLE-------HVFDY 231

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GGL  +++   E ++ ++         + G     VE A+ W +     +  + N I  
Sbjct: 232 EGGLSEFVKYINEGKNHLNEIFHFTTQAENGI---GVEVALQWNDSYQENVRCFTNNIPQ 288

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTRG+  Y E      K  +++  DD       I+SV + +P+F+ Q
Sbjct: 289 KDGGTHLAGFRAALTRGLNSYLENENILKKEKVAVTGDDAREGLTAIVSVKVPDPKFSSQ 348

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441
           TK KLVS + +  VE A+   F  YL++NP  A  +   +I+ +  R   RK      RK
Sbjct: 349 TKEKLVSSEVKPAVEQAMNKAFSEYLLENPAAAKSIAGKIIDAARARDAARKAREMTRRK 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           +A+    LPGKLADC +     +ELF+VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  
Sbjct: 409 SALDIAGLPGKLADCQEKDPALSELFLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +++ ++ ++  L+ ALGC   R +Y  + LRY K++IMTDADVDG+HI +LLLTFF+
Sbjct: 469 ARFDRMISSAEVGTLITALGCGIGREEYNPDKLRYHKIVIMTDADVDGSHIRTLLLTFFF 528

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++M +L+E+ H+++  PPL+++ +G +  Y  D +  +  L
Sbjct: 529 RQMPELVERGHIYIAQPPLYKLKKGKQEQYIKDNDALETYL 569



 Score =  133 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 17/126 (13%)

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           +  + LIE+   +L         +G + V   +     ++ +   +  +  + I R+KGL
Sbjct: 714 RSWFSLIEEG-AYL--------EKGERRVQVSN---FHQVWQFILQDSRRGMMIQRYKGL 761

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GEM A QL ET MD   R +L+V I+  +    +     + LMG   + R  FI+E A  
Sbjct: 762 GEMNAEQLWETTMDPENRNMLQVTIDDAI----EADRMFSCLMGDDVEPRRAFIEENALN 817

Query: 681 IDDVGT 686
            D +  
Sbjct: 818 AD-IDA 822


>gi|209551517|ref|YP_002283434.1| DNA gyrase subunit B [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209537273|gb|ACI57208.1| DNA gyrase, B subunit [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 811

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 235/577 (40%), Positives = 344/577 (59%), Gaps = 16/577 (2%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEV 89
              +      S  Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE 
Sbjct: 2   SDTSATENGVSTEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEA 61

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
           +AG+A+++ V+L+ +G +TV DNGRGIP + H      S  E+I+T LHAGGKFD ++Y+
Sbjct: 62  LAGHADIVTVTLNPDGSVTVTDNGRGIPTDIH-TGEGVSAAEVIMTQLHAGGKFDQNSYK 120

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  L + + RQ  I    F+ G+  +PL+   +  N+ GT ++F
Sbjct: 121 VSGGLHGVGVSVVNALSVWLKLKIRRQGKIHEMSFTHGVADAPLKVTGEAPNETGTEVSF 180

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P    F     FD   L    +  A+L+  V+   +  +    K     +EE  + GGL
Sbjct: 181 MPSTDTFT-MTEFDYGTLEHRLRELAFLNSGVRILLTDKRHSDIK-----QEELRYDGGL 234

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328
           + ++      +  +  +    + EK G    TVE A+ W +   E    + N I   +GG
Sbjct: 235 EAFVAYLDRAKKSLVDKPVAIRGEKDGI---TVEVAMWWNDSYHENVLCFTNNIPQRDGG 291

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  YA+ +   +   +    +D       +LSV + +P+F+ QTK K
Sbjct: 292 THMAGFRAALTRQVVSYADSSGITKREKVTLQGEDCREGLTAVLSVKVPDPKFSSQTKDK 351

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           LVS + +  VE+ + +  + +  ++P EA  L+  V+E +  R   RK RE   RK A+ 
Sbjct: 352 LVSSEVRPVVESLVNEALNTWFEEHPSEAKILVGKVVEAAAAREAARKARELTRRKGALD 411

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS+     +E+F+VEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  +
Sbjct: 412 IASLPGKLADCSERDPTKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 471

Query: 506 KIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           K+ ++Q+I  L+ ALG          E LRY K+IIMTDADVDGAHI +LLLTFF+++M 
Sbjct: 472 KMLSSQEIGTLITALGTGIGKDEFNVEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 531

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +LIE+ HL++  PPL+++++G    Y  DE+  ++ L
Sbjct: 532 ELIERGHLYIAQPPLYKVSRGKSVQYLKDEKALEEYL 568



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 4/88 (4%)

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           + +L+     G+  + + R+KGLGEM A QL ET +D N R+LL+V++        D   
Sbjct: 727 RALLDAIFATGRKGLTMQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVPDAT----DADG 782

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
              +LMG + + R +FIQ+ A  + ++ 
Sbjct: 783 LFARLMGDEVEPRREFIQDNALSVANLD 810


>gi|325203331|gb|ADY98784.1| DNA gyrase, B subunit [Neisseria meningitidis M01-240355]
          Length = 796

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 228/601 (37%), Positives = 340/601 (56%), Gaps = 24/601 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95
            +   + Y A SI++LEGLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V DNGRG+P   HPK   +S  E+I+T LHAGGKFDN++Y+ISGGLH
Sbjct: 62  KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD + +T+ R       +F RG    PL+      +K+GT + F    + 
Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGD-SDKKGTTVRFLASAET 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           FG+   +    L K  +  ++L+  V    + +++        + E F   GG+  ++Q 
Sbjct: 180 FGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
               ++ +  +IF    EK G    +VE A+ W +     +  + N I   +GGTH + L
Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R  +TR I  Y E  +   K  +    DD+      +LSV + +P+F+ QTK KLVS + 
Sbjct: 289 RQVMTRTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEI 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
              V   +      +L +NP EA  +   +++ +  R   RK RE+ R+   +  L LPG
Sbjct: 349 GPVVNEVISQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSA Q R+R  QA+LPL+GKILNV  A  EK+  +Q
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468

Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALG     +    E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ 
Sbjct: 469 EVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPL++   G +  Y  DE  K + L          +   R      +  ++L +
Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVSDGR-----TIEGAELAD 583

Query: 631 T 631
           T
Sbjct: 584 T 584



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 10/108 (9%)

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L++   G      +D +  +  L+      +  + I R+KGLGEM   QL ET MD   R
Sbjct: 699 LYKGENG------YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVR 752

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
            LL+V I   +       +    LMG + + R  FI+  A    ++  
Sbjct: 753 RLLKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796


>gi|254805746|ref|YP_003083967.1| DNA gyrase subunit B [Neisseria meningitidis alpha14]
 gi|254669288|emb|CBA08244.1| DNA gyrase subunit B [Neisseria meningitidis alpha14]
          Length = 796

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 228/601 (37%), Positives = 340/601 (56%), Gaps = 24/601 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95
            +   + Y A SI++LEGLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V DNGRG+P   HPK   +S  E+I+T LHAGGKFDN++Y+ISGGLH
Sbjct: 62  KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD + +T+ R       +F RG    PL+      +K+GT + F    + 
Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGD-SDKKGTTVRFLASTET 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           FG+   +    L K  +  ++L+  V    + +++        + E F   GG+  ++Q 
Sbjct: 180 FGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
               ++ +  +IF    EK G    +VE A+ W +     +  + N I   +GGTH + L
Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R  +TR I  Y E  +   K  +    DD+      +LSV + +P+F+ QTK KLVS + 
Sbjct: 289 RQVMTRTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEI 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
              V   +      +L +NP EA  +   +++ +  R   RK RE+ R+   +  L LPG
Sbjct: 349 GPVVNEVISQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSA Q R+R  QA+LPL+GKILNV  A  EK+  +Q
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468

Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALG     +    E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ 
Sbjct: 469 EVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPL++   G +  Y  DE  K + L          +   R      +  ++L +
Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVSDGR-----TIEGAELAD 583

Query: 631 T 631
           T
Sbjct: 584 T 584



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 10/108 (9%)

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L++   G      +D +  +  L+      +  + I R+KGLGEM   QL ET MD   R
Sbjct: 699 LYKGENG------YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVR 752

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
            LL+V I   +       +    LMG + + R  FI+  A    ++  
Sbjct: 753 RLLKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796


>gi|149912065|ref|ZP_01900656.1| Putative DNA gyrase, subunit B [Moritella sp. PE36]
 gi|149804861|gb|EDM64898.1| Putative DNA gyrase, subunit B [Moritella sp. PE36]
          Length = 805

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 227/578 (39%), Positives = 348/578 (60%), Gaps = 18/578 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
           + +NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I 
Sbjct: 2   SENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCTDIV 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +G ++V D+GRGIPV+ H +    S  E+ILT LHAGGKFD+++Y++SGGLHGVG
Sbjct: 62  VTIHDDGSVSVSDDGRGIPVDIHEE-EGVSAAEVILTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS++L +T+ R   I +Q +  G+P +P+     V    GT++ F P    F +
Sbjct: 121 VSVVNALSEKLELTIFRHGKIHNQIYRHGVPEAPMAATG-VIEGTGTKLRFWPSHDTFTN 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++E        + + F + GG+K ++     
Sbjct: 180 TL-FHYDILAKRLRELSFLNSGVSIKLIDERED------GKSDHFVYQGGIKAFIDYLNV 232

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ I+ + F    E+      TVE A+ W +     I  + N I   +GG H +G R A
Sbjct: 233 NKTPINKDAFHFSVERDD--GITVEVAMQWNDGFQEAIYCFTNNIPQRDGGAHLAGFRGA 290

Query: 338 LTRGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           LTR +  Y E     +  ++ +   DD       ++SV + +P+F+ QTK KLVS + + 
Sbjct: 291 LTRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKS 350

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKL 453
            VE ++ +    YL++NP EA  ++  +I+ S  R   RK      RK A+    LPGKL
Sbjct: 351 AVEQSMGEKLAEYLLENPKEAATVVTKIIDASRAREAARKARDMTRRKGALDLAGLPGKL 410

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 411 ADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 470

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ A+GC   R +Y  +  RY ++IIMTDADVDG+HI +LLLTFF+++M +LIE+ ++
Sbjct: 471 ATLITAMGCGIGRDEYNPDKTRYHQIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYI 530

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           ++  PPL+++ +G +  Y  D+    + L        G
Sbjct: 531 YIAQPPLYKMKKGKQERYLKDDADLTQYLTTIALDDAG 568



 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G K+          + L       K    I R+KGLGEM  SQL ET MD + R +L
Sbjct: 708 IKRGEKTREVTS---FVEALNWLMAESKRGSYIQRYKGLGEMNPSQLWETTMDPDTRRML 764

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG   + R +FI+E A  + ++ 
Sbjct: 765 QVRIEDAV----AADQLFTTLMGDHVEPRREFIEENALKVANLD 804


>gi|260429429|ref|ZP_05783406.1| DNA gyrase, B subunit [Citreicella sp. SE45]
 gi|260420052|gb|EEX13305.1| DNA gyrase, B subunit [Citreicella sp. SE45]
          Length = 805

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 224/580 (38%), Positives = 331/580 (57%), Gaps = 16/580 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
                A   Y A SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DN +DE +AG+
Sbjct: 2   AEPAGAPQEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGH 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ + V +  +  ++V DNGRGIPV+ H +    S  E+I+T LHAGGKFD ++Y++SGG
Sbjct: 62  ADFVRVKIHADNSVSVRDNGRGIPVDMHHE-EGVSAAEVIMTQLHAGGKFDQNSYKVSGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS  L + + R       KF  G     L    +   ++GT + F    
Sbjct: 121 LHGVGVSVVNALSVWLELRIWRNGKEHYAKFEHGETTEHLRVVGEAPGEKGTEVRFLAST 180

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
             F +   FD   L K  +  A+L+  V+     ++        P + E ++ GG+K ++
Sbjct: 181 GTFSNL-DFDFHTLEKRLRELAFLNSGVRIILEDER-----PAEPLRIELHYDGGVKEFV 234

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +    ++  +  +      EK G     VE A+ W +     +  + N I   +GGTH +
Sbjct: 235 KYLDRSKQPMMPDPIYMTGEKDGI---GVEVAMWWNDSYHETVLPFTNNIPQRDGGTHLA 291

Query: 333 GLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR + +YA  +   +   ++   DD       +LSV + +P+F+ QTK KLVS 
Sbjct: 292 GFRGALTRTLTRYATDSGIAKREKVNFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 351

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           + +  VEN + +    +  ++P EA  ++  ++E +  R   RK RE   RK  +    L
Sbjct: 352 EVRPAVENLVNEKLTEWFEEHPNEAKIIVGKIVEAALAREAARKARELTRRKNPMDVNFL 411

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
            GKL DCS+     TELFIVEGDSAGGSA+  R+R  QA+LPL+GKILNV  A  +++  
Sbjct: 412 AGKLKDCSEKDPSKTELFIVEGDSAGGSAQTGRDRGTQAILPLKGKILNVERARFDRMLG 471

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q+I +LV ALG    R ++  E LRY K+I+MTDADVDGAHI +LLLTFFY++M +LIE
Sbjct: 472 SQEIGNLVMALGTGIGRDEFNIEKLRYHKIILMTDADVDGAHIRTLLLTFFYRQMPELIE 531

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             +L++  PPL+++++G   VY  D+      L +    G
Sbjct: 532 GGYLYIAQPPLYKVSRGKSEVYVKDQAALDAYLIDQGIDG 571



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 4/86 (4%)

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
           +LE   + G+  + + R+KGLGEM   QL ET +D + RTLL+V ++     L +  D  
Sbjct: 723 LLEGILEEGEKGLALQRYKGLGEMNPGQLWETTLDPDARTLLQVRVDD----LTEADDIF 778

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
            KLMG   + R +FIQ+ A  ++++ 
Sbjct: 779 TKLMGDVVEPRREFIQQNALSVENLD 804


>gi|92112140|ref|YP_572068.1| DNA gyrase subunit B [Chromohalobacter salexigens DSM 3043]
 gi|91795230|gb|ABE57369.1| DNA gyrase subunit B [Chromohalobacter salexigens DSM 3043]
          Length = 805

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 230/579 (39%), Positives = 340/579 (58%), Gaps = 19/579 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
           +   YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  E++DN++DE +AG+ + I 
Sbjct: 2   SEQAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFELVDNSIDEALAGHCSEIR 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V +  +  +TV DNGRGIP + H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG
Sbjct: 62  VVIHPDESITVSDNGRGIPTDIHSE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +TV R   ++ Q +  G+P SPL+   K     GT++ F+P  + F +
Sbjct: 121 VSVVNALSEELKLTVWRAGQVYEQIYHHGVPDSPLDVVGKTEK-SGTQVNFKPSTETFAN 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++  AE       E F++ GGL+ ++     
Sbjct: 180 I-EFHYDILAKRLRELSFLNSGVAIRLIDERSGAE-------ELFHYEGGLRAFVDHLNT 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++           G     VE A+ W +     I  Y N I   +GGTH +G R A
Sbjct: 232 NKTALNQIFHFETQRDDGI---AVEVAMQWNDTFSENIFCYTNNIPQHDGGTHLAGFRAA 288

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 289 LTRTLNHYIESEGLLKKAKVNTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKTA 348

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  +   F  YLV+ P EA  ++  +++ +  R   RK      RK A+    LPGKLA
Sbjct: 349 VEQEMGRQFSDYLVERPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLA 408

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 409 DCQEKDPSLSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 468

Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            L+ ALGC   R ++  + LRY  +IIMTDADVDG+HI +LLLTFF+++M +LIE+ H+F
Sbjct: 469 TLITALGCGIGREEFNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGHVF 528

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612
           +  PPL++I +G +  Y  DE+     L      G    
Sbjct: 529 IAQPPLYKIKRGKQETYLKDEQALTDYLTTTALDGARLY 567



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 5/87 (5%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           + L+      +  + + R+KGLGEM   QL ET MD   R +LRV I   + S       
Sbjct: 723 EALDWLMSEAQRGLSVQRYKGLGEMNPEQLWETTMDPQSRRMLRVSIEDAVAS----DMM 778

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            N LMG + + R  FI+  A  + ++ 
Sbjct: 779 FNTLMGDEVEPRRDFIERNAL-VANLD 804


>gi|15676138|ref|NP_273269.1| DNA gyrase subunit B [Neisseria meningitidis MC58]
 gi|7225433|gb|AAF40668.1| DNA gyrase subunit B [Neisseria meningitidis MC58]
 gi|316985132|gb|EFV64084.1| DNA gyrase, B subunit [Neisseria meningitidis H44/76]
 gi|325199420|gb|ADY94875.1| DNA gyrase, B subunit [Neisseria meningitidis H44/76]
          Length = 796

 Score =  508 bits (1309), Expect = e-142,   Method: Composition-based stats.
 Identities = 229/601 (38%), Positives = 340/601 (56%), Gaps = 24/601 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95
            +   + Y A SI++LEGLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V DNGRG+P   HPK   +S  E+I+T LHAGGKFDN++Y+ISGGLH
Sbjct: 62  KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD + +T+ R       +F RG    PL+      +K+GT + F    + 
Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKIVGD-SDKKGTTVRFLASTET 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           FG+   +    L K  +  ++L+  V    + +++        + E F   GG+  ++Q 
Sbjct: 180 FGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
               ++ +  +IF    EK G    +VE A+ W +     +  + N I   +GGTH + L
Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R  +TR I  Y E  +   K  +    DD+      +LSV + +P+F+ QTK KLVS + 
Sbjct: 289 RQVMTRTINNYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEI 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
              V   +      +L +NP EA  +   +++ +  R   RK RE+ R+   +  L LPG
Sbjct: 349 GPVVNEVISQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSA Q R+R  QA+LPL+GKILNV  A  EK+  +Q
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468

Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALG     +    E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ 
Sbjct: 469 EVATLITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPL++   G +  Y  DE  K + L          I   R      +  ++L +
Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIISDGR-----TIEGAELAD 583

Query: 631 T 631
           T
Sbjct: 584 T 584



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 10/108 (9%)

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L++   G      +D +  +  L+      +  + I R+KGLGEM   QL ET MD   R
Sbjct: 699 LYKGENG------YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVR 752

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
            LL+V I   +       +    LMG + + R  FI+  A    ++  
Sbjct: 753 RLLKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796


>gi|218665824|ref|YP_002424518.1| DNA gyrase, B subunit [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218518037|gb|ACK78623.1| DNA gyrase, B subunit [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 800

 Score =  508 bits (1309), Expect = e-142,   Method: Composition-based stats.
 Identities = 222/573 (38%), Positives = 345/573 (60%), Gaps = 19/573 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + YD+SSI++L+GLE VR RPGMYIG TD+   LHH+  EV+DNA+DE + GY + I V+
Sbjct: 3   ETYDSSSIQVLKGLEAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALGGYCDTIIVT 62

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  +++ DNGRGIPV+ H     +S  E+I+T LHAGGKFD++ Y++SGGLHGVG+S
Sbjct: 63  IHEDESVSISDNGRGIPVDMHA-GEGRSAAEVIMTVLHAGGKFDDNAYKVSGGLHGVGVS 121

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ L + + R   +++Q++  G P +P+ +      K G+ I F+P P++F D  
Sbjct: 122 VVNALSETLQLRIFRDGYVWTQEYHDGEPQAPIAR-GDASRKHGSTIRFKPSPQVFADTH 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    + K  +  A+L+  V      ++   E       E F++ GG++ +++    ++
Sbjct: 181 -FHFEIIAKRLRELAFLNSGVHITLLDERASRE-------ETFHYEGGIRAFVEHLNRSK 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + I   + T   E+ G     VE A+ W E     +  + N I   +GGTH +G R ALT
Sbjct: 233 TAIHPSVITLTGERDGI---VVEAALQWNEGYNEAVLCFTNNIPQADGGTHLAGFRGALT 289

Query: 340 RGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R + +Y E      K  +++  +D       +LSV + +P+F+ QTK KLVS + +  VE
Sbjct: 290 RTLNQYMEREGIIAKAKVAVSGEDAREGLTAVLSVKVPDPKFSSQTKEKLVSSEVKPIVE 349

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
           +++ +    +L ++P EA  +   ++E +  R   R+ RE   RK A+    LPGKLADC
Sbjct: 350 SSMSEALTMFLDEHPKEAQAIAAKIVEAARAREAARRARELTRRKGALDIANLPGKLADC 409

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            +      E+++VEGDSAGGSAKQ R+R +QA+LPL+GKILNV  A  +++ ++ +I  L
Sbjct: 410 QEKDPAQCEIYLVEGDSAGGSAKQGRDRRHQAILPLKGKILNVERARFDRMLSSDEIGTL 469

Query: 517 VQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           + ALG    +   +   LRY +VIIMTDADVDG+HI +LLLTFFY++M DL+ + H+++ 
Sbjct: 470 ITALGTGIGAGDFDVAKLRYHRVIIMTDADVDGSHIRTLLLTFFYRQMPDLVARGHIYIA 529

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
            PPL+++ +G +  Y  D+      L E    G
Sbjct: 530 QPPLYKVKKGKEERYLKDDGELAAYLREIAMQG 562



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            +  ++      +  +EI R+KGLGEM   QL ET M+A  R L+RV++   +       
Sbjct: 715 FRTAMDWLLADARRGVEIQRYKGLGEMNPEQLWETTMNAANRRLVRVDVEDAI----AAD 770

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           +  + LMG   + R +FI+E A F+  + 
Sbjct: 771 EVFSMLMGDAVEPRRRFIEENARFVSRLD 799


>gi|198282152|ref|YP_002218473.1| DNA gyrase subunit B [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|198246673|gb|ACH82266.1| DNA gyrase, B subunit [Acidithiobacillus ferrooxidans ATCC 53993]
          Length = 801

 Score =  508 bits (1309), Expect = e-142,   Method: Composition-based stats.
 Identities = 222/573 (38%), Positives = 345/573 (60%), Gaps = 19/573 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + YD+SSI++L+GLE VR RPGMYIG TD+   LHH+  EV+DNA+DE + GY + I V+
Sbjct: 4   ETYDSSSIQVLKGLEAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALGGYCDTIIVT 63

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  +++ DNGRGIPV+ H     +S  E+I+T LHAGGKFD++ Y++SGGLHGVG+S
Sbjct: 64  IHEDESVSISDNGRGIPVDMHA-GEGRSAAEVIMTVLHAGGKFDDNAYKVSGGLHGVGVS 122

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ L + + R   +++Q++  G P +P+ +      K G+ I F+P P++F D  
Sbjct: 123 VVNALSETLQLRIFRDGYVWTQEYHDGEPQAPIAR-GDASRKHGSTIRFKPSPQVFADTH 181

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    + K  +  A+L+  V      ++   E       E F++ GG++ +++    ++
Sbjct: 182 -FHFEIIAKRLRELAFLNSGVHITLLDERASRE-------ETFHYEGGIRAFVEHLNRSK 233

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + I   + T   E+ G     VE A+ W E     +  + N I   +GGTH +G R ALT
Sbjct: 234 TAIHPSVITLTGERDGI---VVEAALQWNEGYNEAVLCFTNNIPQADGGTHLAGFRGALT 290

Query: 340 RGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R + +Y E      K  +++  +D       +LSV + +P+F+ QTK KLVS + +  VE
Sbjct: 291 RTLNQYMEREGIIAKAKVAVSGEDAREGLTAVLSVKVPDPKFSSQTKEKLVSSEVKPIVE 350

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
           +++ +    +L ++P EA  +   ++E +  R   R+ RE   RK A+    LPGKLADC
Sbjct: 351 SSMSEALTMFLDEHPKEAQAIAAKIVEAARAREAARRARELTRRKGALDIANLPGKLADC 410

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            +      E+++VEGDSAGGSAKQ R+R +QA+LPL+GKILNV  A  +++ ++ +I  L
Sbjct: 411 QEKDPAQCEIYLVEGDSAGGSAKQGRDRRHQAILPLKGKILNVERARFDRMLSSDEIGTL 470

Query: 517 VQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           + ALG    +   +   LRY +VIIMTDADVDG+HI +LLLTFFY++M DL+ + H+++ 
Sbjct: 471 ITALGTGIGAGDFDVAKLRYHRVIIMTDADVDGSHIRTLLLTFFYRQMPDLVARGHIYIA 530

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
            PPL+++ +G +  Y  D+      L E    G
Sbjct: 531 QPPLYKVKKGKEERYLKDDGELAAYLREIAMQG 563



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            +  ++      +  +EI R+KGLGEM   QL ET M+A  R L+RV++   +       
Sbjct: 716 FRTAMDWLLADARRGVEIQRYKGLGEMNPEQLWETTMNAANRRLVRVDVEDAI----AAD 771

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           +  + LMG   + R +FI+E A F+  + 
Sbjct: 772 EVFSMLMGDAVEPRRRFIEENARFVSRLD 800


>gi|258546265|ref|ZP_05706499.1| DNA gyrase subunit B [Cardiobacterium hominis ATCC 15826]
 gi|258518531|gb|EEV87390.1| DNA gyrase subunit B [Cardiobacterium hominis ATCC 15826]
          Length = 800

 Score =  508 bits (1309), Expect = e-142,   Method: Composition-based stats.
 Identities = 235/569 (41%), Positives = 340/569 (59%), Gaps = 19/569 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S +++YD+S IR+L+GLE VR+RPGMYIG TD+   LHH+  EV+DNA+DE +AGY   I
Sbjct: 2   SDNNSYDSSRIRVLKGLEAVRIRPGMYIGNTDDGSGLHHMVFEVVDNAIDEALAGYCTEI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V +  +  +TV DNGRGIPV+ HP+   +S  E+I+T LHAGGKFD++ Y++SGGLHGV
Sbjct: 62  NVIIHQDESITVRDNGRGIPVDIHPE-EGRSAAEVIMTVLHAGGKFDDNAYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+ L +T+ R   I  Q +  G P +PL       +  GT I F      FG
Sbjct: 121 GVSVVNALSERLTMTIKRDGHIHQQTYRHGEPQAPLAIIGD-SDSTGTEINFLASSDTFG 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               +D   L +  +  ++L+  V+     ++         + + F + GG+K +++ + 
Sbjct: 180 TVI-YDYDTLAQRLRELSFLNAGVRIELRDERS-------DKNQIFQYEGGVKAFVEYQN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ I   IF    +K G     VE A+ W +     +  + N I   +GGTH +G R 
Sbjct: 232 RNKTPIHPSIFYCAADKDGV---AVEIALQWNDSYAENVYCFTNNIPQRDGGTHLAGFRA 288

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           A+TR +  Y E      K  I+   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 289 AMTRTLNAYMEEEGLLKKAKIATSGDDSREGLTAIVSVKVHDPKFSSQTKDKLVSSEVKS 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VEN L D    YL+++P EA  +   +++ +  R   RK R    RK A+    LPGKL
Sbjct: 349 AVENVLADKLKEYLLEHPGEAKTIAGKIVDAARAREAARKAREMTRRKDALDIAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +E+FIVEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+  + +I
Sbjct: 409 ADCQEKDPAHSEIFIVEGDSAGGSAKQGRNRKFQAILPLKGKILNVEKARFDKMLGSAEI 468

Query: 514 MDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALG        + E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ H+
Sbjct: 469 GTLITALGTGIGKDDFDAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGHI 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++  PPL+++T+G    Y  D+    ++L
Sbjct: 529 YIAQPPLYKVTKGRNKQYLKDDHELNELL 557



 Score =  130 bits (326), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 18/116 (15%)

Query: 583 TQGTKSV-------YAHDEEHK------QKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           T G K         Y  + + +       +++      GK   +I R+KGLGEM   QL 
Sbjct: 689 TFGKKVRGLLGDGAYFQNSKERLEVEHFHQVINALLAEGKKAYDIQRYKGLGEMNPEQLW 748

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           ET +D   R +L+V++       +   +    LMG + + R  FI++ A+   ++ 
Sbjct: 749 ETTLDPAVRRMLQVQL----KDARLADEIFTTLMGEEVEPRRAFIEDNANSA-NID 799


>gi|226952833|ref|ZP_03823297.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter sp.
           ATCC 27244]
 gi|294648699|ref|ZP_06726159.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Acinetobacter
           haemolyticus ATCC 19194]
 gi|226836454|gb|EEH68837.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter sp.
           ATCC 27244]
 gi|292825374|gb|EFF84117.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 822

 Score =  508 bits (1309), Expect = e-142,   Method: Composition-based stats.
 Identities = 226/581 (38%), Positives = 341/581 (58%), Gaps = 19/581 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85
                S +   Q+    YD+SSI++L GL+ VR RPGMYIG TD+   LHH+  EV+DNA
Sbjct: 2   SSESQSVSQTEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNA 61

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AG+ + I V++  +  ++V DNGRGIP + HP+    S  E+ILT LHAGGKFD+
Sbjct: 62  IDEALAGHCDEILVTIHEDESVSVSDNGRGIPTDIHPE-EGVSAAEVILTILHAGGKFDD 120

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +L +T+ R      Q++  G P  PL    +  ++ GT
Sbjct: 121 NSYKVSGGLHGVGVSVVNALSSKLQLTIHRAGQEHQQEYHHGDPQYPLRVIGET-DRTGT 179

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            + F P  + F     F+   L +  +  ++L+  V+     ++   E         + +
Sbjct: 180 IVRFWPSAETFSQTI-FNVDILARRLRELSFLNAGVRIVLRDERVNLENV-------YDY 231

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GGL  +++   E ++ ++           G    +VE A+ W +     +  + N I  
Sbjct: 232 EGGLSEFVRYINEGKTHLNEIFHFTTDADNGI---SVEVALQWNDSYQENVRCFTNNIPQ 288

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTRG+  Y E      K  + +  DD       I+SV + +P+F+ Q
Sbjct: 289 KDGGTHLAGFRAALTRGLNSYMENENLLKKEKVVVSGDDAREGLTAIISVKVPDPKFSSQ 348

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441
           TK KLVS + +  VE A+   F  YL++NP  A  +   +I+ +  R   RK      RK
Sbjct: 349 TKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRK 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           +A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  
Sbjct: 409 SALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +K+ ++Q++  L+ ALGC   R +Y  + LRY K+IIMTDADVDG+HI +LLLTFF+
Sbjct: 469 ARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFF 528

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++M +L+E+ ++++  PPL+++ +G +  Y  D E  +  L
Sbjct: 529 RQMPELVERGYIYIAQPPLYKLKKGKQEQYLQDNEALETFL 569



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
             ++ +   +  +  + I R+KGLGEM A QL ET MD   R +L+V I+  +    +  
Sbjct: 738 FHQVWQHILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRNMLQVTIDDAI----EAD 793

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVGT 686
              + LMG   + R  FI+E A   D +  
Sbjct: 794 RMFSCLMGDDVEPRRAFIEENALNAD-IDA 822


>gi|89052495|ref|YP_507946.1| DNA gyrase subunit B [Jannaschia sp. CCS1]
 gi|88862044|gb|ABD52921.1| DNA gyrase subunit B [Jannaschia sp. CCS1]
          Length = 805

 Score =  508 bits (1309), Expect = e-142,   Method: Composition-based stats.
 Identities = 228/570 (40%), Positives = 337/570 (59%), Gaps = 16/570 (2%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANL 96
            ++ D+Y A SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DN +DE +AG+A+ 
Sbjct: 5   PASGDDYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGHADA 64

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           + V+L  +  ++V DNGRGIPV  H +    S  E+I+T LHAGGKFD+++Y++SGGLHG
Sbjct: 65  VTVTLHADSSVSVSDNGRGIPVGIHEE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGGLHG 123

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+SVVNALSD L + + R       +F  G    PLE   +  ++ GT + F    + F
Sbjct: 124 VGVSVVNALSDWLELRIWRDGKEHIARFEGGFTTKPLEVVSECGDRTGTEVRFMASTETF 183

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   +    L    +  A+L+  V+     ++          + + ++ GG++ +++  
Sbjct: 184 SNL-DYVFKTLENRLRELAFLNSGVRIILRDER-----PAEALESDLFYEGGVREFVRYL 237

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335
             +++    E      EK       VE A+ W +   E    + N I   +GGTH +G R
Sbjct: 238 DRSKTSAMEEPIFITGEKDDI---GVEVAMWWNDSYHENVLPFTNNIPQRDGGTHLAGFR 294

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR I  YA+ +    K  +S   DD       +LSV + +P+F+ QTK KLVS + +
Sbjct: 295 GALTRTINLYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVR 354

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
             VE  + +    +  ++P EA  ++  ++E +  R   RK RE   RKTA+    LPGK
Sbjct: 355 PAVEGLVNEKLQEWFEEHPHEARVIVSKIVEAALAREAARKARELTRRKTAMDIASLPGK 414

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +     +ELF+VEGDSAGGSAKQ R+R NQAVLPLRGKILNV  A  +++  +Q+
Sbjct: 415 LADCQEKDPSKSELFLVEGDSAGGSAKQGRSRHNQAVLPLRGKILNVERARFDRMLGSQE 474

Query: 513 IMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           I  L+ ALG    R ++  + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE  +
Sbjct: 475 IGTLITALGTGIGRDEFNIDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIEGGY 534

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           L++  PPL+++++G   VY  DE   +  L
Sbjct: 535 LYIAQPPLYKVSRGKSEVYLKDETALEDYL 564



 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           ++L+     G    ++ R+KGLGEM   QL ET +D   RTLL+V+I+   ++       
Sbjct: 722 ELLKAILDEGAKGQQMQRYKGLGEMNPDQLWETTLDHEARTLLQVKIDDLADADDI---- 777

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R +FIQ  A  ++++ 
Sbjct: 778 FTKLMGDVVEPRREFIQNNALSVENLD 804


>gi|294788048|ref|ZP_06753292.1| DNA topoisomerase IV, B subunit [Simonsiella muelleri ATCC 29453]
 gi|294484341|gb|EFG32024.1| DNA topoisomerase IV, B subunit [Simonsiella muelleri ATCC 29453]
          Length = 657

 Score =  508 bits (1309), Expect = e-142,   Method: Composition-based stats.
 Identities = 246/660 (37%), Positives = 352/660 (53%), Gaps = 38/660 (5%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
              +Y  SSI++L+GLEPV+ RPGMY   T   +  H+  EVIDNA DE + G+A  I+V
Sbjct: 2   TKQSYSESSIQVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATQIDV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD----NSTYEISGGLH 155
            +  +G L V DNGRGIP   HP       +E++ T LHAGGKF+    +  Y  SGGLH
Sbjct: 59  KIQSDGSLCVRDNGRGIPTGLHP-IEKIPVVELVFTQLHAGGKFNKKSGDGAYAFSGGLH 117

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPK 214
           GVG+SV NALS  L V V R+  I    F+ G  + PL +  K      GT +   P+PK
Sbjct: 118 GVGVSVTNALSTRLEVMVKREGKISRIVFANGDVVEPLTQIGKCAIKDTGTEVRVYPNPK 177

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
            F     ++   L ++ ++KA L   V    +         G+PE + +++P GL++YL 
Sbjct: 178 YFESPN-YNIGELERLLRAKAVLLQGVTVSLT-----RHIKGLPETQTWHYPQGLRSYLT 231

Query: 275 TKLENRSLISS----EIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGT 329
             LEN   I      E +   +           +A+ W E+      SY N I T  GGT
Sbjct: 232 DLLENTQEIVPIFAAENYISGSHDDFNAGEGAAFALTWLEDGSCANESYVNLIPTPLGGT 291

Query: 330 HESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           HE+GL+ A    +  +        R + + SDD+      +LS  + +P+F GQTK KL 
Sbjct: 292 HEAGLKQAAFNAVNNFIMHHNLLPRGVKLQSDDVFSRVAFVLSARVLDPQFQGQTKDKLT 351

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR 448
           + DA + V     DP + +L QN     K+ E  I++++ R+R    +++ +K       
Sbjct: 352 NRDALKLVATVCSDPLELWLNQNVEIGRKIAELAIKQAQARMRSV--KKIEKKKGSGVAV 409

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKL DC        ELF+VEGDSAGGSAK AR++S QAVLPLRGK+LN      +++ 
Sbjct: 410 LPGKLTDCESEDTRENELFLVEGDSAGGSAKLARDKSFQAVLPLRGKVLNSFEVNRDQLF 469

Query: 509 NNQQIMDLVQALGCRTRSQYREEDL---RYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
            N +I D+  A+G     +  + DL   RY K+ I++DADVDG+HI  LLLT FY+    
Sbjct: 470 GNAEIHDISVAIGIDPHGKNEDVDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHFPK 529

Query: 566 LIEQKHLFLISPPLFRI-------TQGTKSVYAHDEEHKQKILEEFKKHG--KGKIEISR 616
           LIE  ++++  PPLFR+       T+  +  YA D+     ILE  KK    +    ISR
Sbjct: 530 LIENGNIYVAQPPLFRVDVNAQSKTKPARKFYALDQAELDGILERLKKENVKESAYSISR 589

Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQ 675
           FKGLGEM   QLK+T +  + R LL+V I + +    +T+    KLMG  +A  R  +++
Sbjct: 590 FKGLGEMNPDQLKDTTLHPDTRRLLQVHIPEAMAD--NTESVFLKLMGKGEASSRRAWME 647


>gi|268597708|ref|ZP_06131875.1| DNA gyrase subunit B [Neisseria gonorrhoeae FA19]
 gi|268683013|ref|ZP_06149875.1| DNA gyrase subunit B [Neisseria gonorrhoeae PID332]
 gi|268551496|gb|EEZ46515.1| DNA gyrase subunit B [Neisseria gonorrhoeae FA19]
 gi|268623297|gb|EEZ55697.1| DNA gyrase subunit B [Neisseria gonorrhoeae PID332]
          Length = 796

 Score =  508 bits (1309), Expect = e-142,   Method: Composition-based stats.
 Identities = 228/601 (37%), Positives = 342/601 (56%), Gaps = 24/601 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95
            +   + Y A SI++LEGLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V DNGRG+P   HPK   +S  E+I+T LHAGGKFDN++Y+ISGGLH
Sbjct: 62  KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD + +T+ R       +F RG    PL+      +K+GT + F    + 
Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKIVGD-SDKKGTTVRFLAGTET 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           FG+   +    L K  +  ++L+  V    + +++        + E F   GG+  ++Q 
Sbjct: 180 FGNI-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
               ++ +  +IF    EK G    +VE A+ W +     +  + N I   +GGTH + L
Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R  +TR I  Y E  +   K  +    DD+      +LSV + +P+F+ QTK KLVS + 
Sbjct: 289 RQVMTRTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEI 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
              V   +      +L +NP EA  +   +++ +  R   RK RE+ R+   +  L LPG
Sbjct: 349 GPVVNEVINQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSA Q R+R  QA+LPL+GKILNV  A  EK+  +Q
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALG    + ++  E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ 
Sbjct: 469 EVATLITALGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPL++   G +  Y  DE  K + L          +   R      +  ++L +
Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVSDGR-----TIEGAELAD 583

Query: 631 T 631
           T
Sbjct: 584 T 584



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%)

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           ++ +G      +D +  +  L+      +  + I R+KGLGEM   QL ET MD   R L
Sbjct: 698 KLYKGENE---YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRL 754

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           L+V I   +       +    LMG + + R  FI+  A    ++  
Sbjct: 755 LKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796


>gi|223936717|ref|ZP_03628627.1| DNA gyrase, B subunit [bacterium Ellin514]
 gi|223894568|gb|EEF61019.1| DNA gyrase, B subunit [bacterium Ellin514]
          Length = 853

 Score =  508 bits (1309), Expect = e-142,   Method: Composition-based stats.
 Identities = 231/626 (36%), Positives = 343/626 (54%), Gaps = 28/626 (4%)

Query: 23  LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82
            KK   + +  A A   A D+YDAS I  LEGL+ VR RPGMYIG TDE+ LHH   EV+
Sbjct: 2   SKKPEVLEEELAVAKPEAGDSYDASKIDKLEGLDGVRKRPGMYIGPTDERGLHHCVFEVM 61

Query: 83  DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142
           DN++DE +AG+ + IEV++  +G +++ DNGRGIPV++H K      +E +LT LHAGGK
Sbjct: 62  DNSIDEHLAGFCSKIEVTMHVDGSVSIRDNGRGIPVDSHEKTKGMPAVEFVLTHLHAGGK 121

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           F    Y+ SGGLHGVG   VNALSD   V V+R + ++   F RG     L+     +N 
Sbjct: 122 FGQGAYKYSGGLHGVGAKCVNALSDWFKVEVSRDSKVYHMAFERGKTTETLKVIGSSKN- 180

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT ITF+ DP IF     F    L    +  A+L+  +    + ++         + E+
Sbjct: 181 TGTLITFKADPTIFTITTEFKFEILANRLRELAFLNPGLVIQLTDER------AESKSEK 234

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEK----------KGTHRGTVEWAIAWCEEN 312
           F+F  G++ +++   +N+ +I  +       +          +      ++  + + +  
Sbjct: 235 FFFEDGVRDFVEQLGKNKQVIHPKPIVLNGRRPVKYKGKDGNEVEADMILDCVLQYNDSY 294

Query: 313 PEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369
            +    Y N I   +GG+H +G R ALTR I +YA+      ++  S+  DD+    V +
Sbjct: 295 SDQILCYTNAIPNPDGGSHSTGFRTALTRAINQYAKANNLIKEKDPSLTGDDVREGLVAV 354

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           +++    P F  QTK KLV+ +A+  V +   D    Y   NP  A K+++  +  +  R
Sbjct: 355 VAIKHPNPSFESQTKVKLVTPEAEGIVSSITYDGLMAYFDGNPSAAKKIVDKGLTAARAR 414

Query: 430 LRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
              RK RE  RK+A+    LPGKLADCS      TE++IVEGDSAGGSAKQ R+R  QA+
Sbjct: 415 EAARKARETVRKSALTGGGLPGKLADCSDRDPANTEVYIVEGDSAGGSAKQGRDRKFQAI 474

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS-----QYREEDLRYEKVIIMTDA 544
           LP+RGK++NV  A  +K+  N +I  ++ A+G           +  + LRY K+IIMTDA
Sbjct: 475 LPIRGKLINVEKARLDKVLQNTEIRTMITAVGTGIGDGEGEGSFNIQKLRYHKIIIMTDA 534

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           DVDG+HI +LLLTFFY++M  LI+   +++  PPL++I++  +  Y  D+    KIL + 
Sbjct: 535 DVDGSHIRTLLLTFFYRQMPQLIKGGFIYIAQPPLYQISRKKRVEYVEDDAQLNKILIQI 594

Query: 605 KKHGKGKIEISRFKGLGEMLASQLKE 630
                    I+  K   EM  SQL E
Sbjct: 595 ATDEVRLRNITDGK---EMSRSQLAE 617



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/109 (36%), Positives = 61/109 (55%), Gaps = 5/109 (4%)

Query: 578 PLFRITQG-TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PLF + +G  +           +IL+   + G+  I+I RFKGLGEM A+QL ET MD  
Sbjct: 748 PLFELIEGEGEKQTVKPLFSIAEILDSVLEVGRRGIQIKRFKGLGEMNAAQLFETTMDPA 807

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           KR LLRV    DL    + ++  +KLMG + + R +FI++ A  + ++ 
Sbjct: 808 KRKLLRV----DLADAVEAEEMFSKLMGDEVEPRRQFIEDNALNVRNLD 852


>gi|59802091|ref|YP_208803.1| DNA gyrase subunit B [Neisseria gonorrhoeae FA 1090]
 gi|254494648|ref|ZP_05107819.1| DNA gyrase subunit B [Neisseria gonorrhoeae 1291]
 gi|260439612|ref|ZP_05793428.1| DNA gyrase subunit B [Neisseria gonorrhoeae DGI2]
 gi|268593849|ref|ZP_06128016.1| DNA gyrase subunit B [Neisseria gonorrhoeae 35/02]
 gi|268599958|ref|ZP_06134125.1| DNA gyrase subunit B [Neisseria gonorrhoeae MS11]
 gi|268602293|ref|ZP_06136460.1| DNA gyrase subunit B [Neisseria gonorrhoeae PID18]
 gi|268683318|ref|ZP_06150180.1| DNA gyrase subunit B [Neisseria gonorrhoeae SK-92-679]
 gi|268687441|ref|ZP_06154303.1| DNA gyrase subunit B [Neisseria gonorrhoeae SK-93-1035]
 gi|293398129|ref|ZP_06642334.1| DNA gyrase, B subunit [Neisseria gonorrhoeae F62]
 gi|59718986|gb|AAW90391.1| putative DNA gyrase subunit B [Neisseria gonorrhoeae FA 1090]
 gi|226513688|gb|EEH63033.1| DNA gyrase subunit B [Neisseria gonorrhoeae 1291]
 gi|268547238|gb|EEZ42656.1| DNA gyrase subunit B [Neisseria gonorrhoeae 35/02]
 gi|268584089|gb|EEZ48765.1| DNA gyrase subunit B [Neisseria gonorrhoeae MS11]
 gi|268586424|gb|EEZ51100.1| DNA gyrase subunit B [Neisseria gonorrhoeae PID18]
 gi|268623602|gb|EEZ56002.1| DNA gyrase subunit B [Neisseria gonorrhoeae SK-92-679]
 gi|268627725|gb|EEZ60125.1| DNA gyrase subunit B [Neisseria gonorrhoeae SK-93-1035]
 gi|291611392|gb|EFF40462.1| DNA gyrase, B subunit [Neisseria gonorrhoeae F62]
          Length = 796

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 228/601 (37%), Positives = 342/601 (56%), Gaps = 24/601 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95
            +   + Y A SI++LEGLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V DNGRG+P   HPK   +S  E+I+T LHAGGKFDN++Y+ISGGLH
Sbjct: 62  KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD + +T+ R       +F RG    PL+      +K+GT + F    + 
Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKIVGD-SDKKGTTVRFLAGTET 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           FG+   +    L K  +  ++L+  V    + +++        + E F   GG+  ++Q 
Sbjct: 180 FGNI-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
               ++ +  +IF    EK G    +VE A+ W +     +  + N I   +GGTH + L
Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R  +TR I  Y E  +   K  +    DD+      +LSV + +P+F+ QTK KLVS + 
Sbjct: 289 RQVMTRTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEI 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
              V   +      +L +NP EA  +   +++ +  R   RK RE+ R+   +  L LPG
Sbjct: 349 GPVVNEVINQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSA Q R+R  QA+LPL+GKILNV  A  EK+  +Q
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALG    + ++  E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ 
Sbjct: 469 EVATLITALGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPL++   G +  Y  DE  K + L          +   R      +  ++L +
Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVSDGR-----TIEGAELAD 583

Query: 631 T 631
           T
Sbjct: 584 T 584



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%)

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           ++ +G      +D +  +  L+      +  + I R+KGLGEM   QL ET MD   R L
Sbjct: 698 KLYKGENE---YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRL 754

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           L+V I   +       +    LMG + + R  FI+  A    ++  
Sbjct: 755 LKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796


>gi|163783146|ref|ZP_02178140.1| gyrase B [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881480|gb|EDP74990.1| gyrase B [Hydrogenivirga sp. 128-5-R1-1]
          Length = 798

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 230/603 (38%), Positives = 341/603 (56%), Gaps = 21/603 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86
              P+      +    +Y A  I+ + GLE VR+RP MYIG   E+ LHHL  E++DNA+
Sbjct: 1   MTNPEDLKNPQEVQDVDYGAQDIKAVTGLEHVRLRPAMYIGDVGERGLHHLIWEILDNAV 60

Query: 87  DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146
           DE +AGYA  + V +  +G +TV D+GRGIPV+ HP+   K  +E++ T L AGGKF+  
Sbjct: 61  DEAMAGYAKNVSVIIHDDGSITVEDDGRGIPVDIHPE-TGKPAVEMVFTMLGAGGKFEKK 119

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
            Y  SGGLHGVG SVVNALS+ L V V R   I+ Q++ RG P+  L+        RGTR
Sbjct: 120 AYAYSGGLHGVGASVVNALSEWLLVEVYRDGKIYRQEYRRGEPVYELKVVGNTTK-RGTR 178

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           +TF+PDP IF          + K  +  AYL+  V+     ++   E         + F 
Sbjct: 179 VTFKPDPDIFETTR-IKFDIVEKRLRELAYLNPEVRFYLKDERSDKEIV-------YKFD 230

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
            G++  ++   + +  +  +I   + +K G     V+ A  +  +    I S+ N + T 
Sbjct: 231 RGIEELVEYLSQAKEPLFKDIVRIQGDKDGVI---VDIAFRYVRDYKELIDSFVNNVKTV 287

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQT 383
           EGGTH +G R  LT+ + + AE  +  + +      +D+    V ++S  + EP+F GQT
Sbjct: 288 EGGTHVTGFRSGLTKAVVRLAEGLKLSKELKTMFSGEDVREGLVAVISCKVPEPQFEGQT 347

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKT 442
           KTKL + + +  V++ + D    Y  +N      ++E  IE +  R   +K +E V RK+
Sbjct: 348 KTKLGNQNVKTIVDSIVYDYLTEYFNENKDVLKLIVEKAIEAALAREAAKKAKELVRRKS 407

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
            +    LPGKLADCS+      E+FIVEGDSAGGSAKQAR+R  QA+LPLRGKI+NV  A
Sbjct: 408 PLEDGILPGKLADCSEKDPEKCEIFIVEGDSAGGSAKQARDRRFQAILPLRGKIINVEKA 467

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
             +K+  N+++  +V ALGC    +     LRY K+I+MTDAD+DG+HI +LLLTFFY+ 
Sbjct: 468 RIDKVLANEEVKAIVSALGCGIGEELDLSKLRYHKIILMTDADIDGSHIRTLLLTFFYRF 527

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISR-FKG- 619
           M  LIE  ++++  PPL+++ +G K +Y  D+   +  L+E  K     K  + R F+G 
Sbjct: 528 MPQLIENGYVYIALPPLYKLKKGRKEMYVKDDRELEHFLQELVKEHSYIKDSVGREFRGE 587

Query: 620 -LG 621
            LG
Sbjct: 588 ELG 590



 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            +++ +   +  K  IEI R+KGLGEM   QL ET MD   R L+RV +   +    +  
Sbjct: 713 LKEVYDTVMELVKSGIEIQRYKGLGEMNPQQLWETTMDPKTRRLMRVTVEDAV----EAD 768

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG + + R +FI+  A  + ++ 
Sbjct: 769 RIFTILMGEQVEPRREFIETYAKEVKNLD 797


>gi|167031027|ref|YP_001666258.1| DNA gyrase subunit B [Pseudomonas putida GB-1]
 gi|166857515|gb|ABY95922.1| DNA gyrase, B subunit [Pseudomonas putida GB-1]
          Length = 806

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 225/569 (39%), Positives = 346/569 (60%), Gaps = 18/569 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S +  YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I
Sbjct: 2   SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V +  +  ++V DNGRGIPV+ H K    S  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  TVIIHTDESISVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS++L +TV R   I+ Q +  G+P +P+          GT I F+P  + F 
Sbjct: 121 GVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGD-SETTGTHIHFKPSAETFK 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++   
Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGILLKDERSGKE-------EFFKYEGGLRAFVEYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++S++F    ++       VE A+ W +     +  + N I   +GGTH  G R 
Sbjct: 232 TNKTPVNSQVFHFNVQRDD--GVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 289

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           +LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 290 SLTRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 349

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPGKL
Sbjct: 350 AVEQEMNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 409

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 410 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 469

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF++++ +L+E+ ++
Sbjct: 470 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGYI 529

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++  PPL+++ +G +  Y  D+E  ++ +
Sbjct: 530 YIAQPPLYKVKKGKQEQYIKDDEAMEEYM 558



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             ++ L+        +  I R+KGLGEM   QL ET MD   R +L+V I   +      
Sbjct: 720 EFKEGLDWLMNETTKRHTIQRYKGLGEMNPDQLWETTMDPTVRRMLKVTIEDAI----AA 775

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
               N LMG   + R  FI+  A  + ++ 
Sbjct: 776 DQIFNTLMGDAVEPRRDFIESNALSVSNLD 805


>gi|189023380|ref|YP_001934148.1| DNA gyrase subunit B [Brucella abortus S19]
 gi|225626666|ref|ZP_03784705.1| DNA gyrase, B subunit [Brucella ceti str. Cudo]
 gi|237814597|ref|ZP_04593595.1| DNA gyrase, B subunit [Brucella abortus str. 2308 A]
 gi|254694923|ref|ZP_05156751.1| DNA gyrase subunit B [Brucella abortus bv. 3 str. Tulya]
 gi|254696550|ref|ZP_05158378.1| DNA gyrase subunit B [Brucella abortus bv. 2 str. 86/8/59]
 gi|254700937|ref|ZP_05162765.1| DNA gyrase subunit B [Brucella suis bv. 5 str. 513]
 gi|254707179|ref|ZP_05169007.1| DNA gyrase subunit B [Brucella pinnipedialis M163/99/10]
 gi|254709277|ref|ZP_05171088.1| DNA gyrase subunit B [Brucella pinnipedialis B2/94]
 gi|254731465|ref|ZP_05190043.1| DNA gyrase subunit B [Brucella abortus bv. 4 str. 292]
 gi|256030800|ref|ZP_05444414.1| DNA gyrase subunit B [Brucella pinnipedialis M292/94/1]
 gi|256060267|ref|ZP_05450442.1| DNA gyrase subunit B [Brucella neotomae 5K33]
 gi|256158821|ref|ZP_05456682.1| DNA gyrase subunit B [Brucella ceti M490/95/1]
 gi|256254206|ref|ZP_05459742.1| DNA gyrase subunit B [Brucella ceti B1/94]
 gi|256258686|ref|ZP_05464222.1| DNA gyrase subunit B [Brucella abortus bv. 9 str. C68]
 gi|260169704|ref|ZP_05756515.1| DNA gyrase subunit B [Brucella sp. F5/99]
 gi|260546403|ref|ZP_05822143.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260759206|ref|ZP_05871554.1| DNA gyrase subunit B [Brucella abortus bv. 4 str. 292]
 gi|260760928|ref|ZP_05873271.1| DNA gyrase subunit B [Brucella abortus bv. 2 str. 86/8/59]
 gi|260885003|ref|ZP_05896617.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|261215258|ref|ZP_05929539.1| DNA gyrase subunit B [Brucella abortus bv. 3 str. Tulya]
 gi|261221355|ref|ZP_05935636.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261314658|ref|ZP_05953855.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261316784|ref|ZP_05955981.1| hypothetical protein BAHG_00433 [Brucella pinnipedialis B2/94]
 gi|261324241|ref|ZP_05963438.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261751453|ref|ZP_05995162.1| DNA gyrase subunit B [Brucella suis bv. 5 str. 513]
 gi|261759241|ref|ZP_06002950.1| DNA gyrase subunit B [Brucella sp. F5/99]
 gi|265987855|ref|ZP_06100412.1| hypothetical protein BALG_00432 [Brucella pinnipedialis M292/94/1]
 gi|265997315|ref|ZP_06109872.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|294851528|ref|ZP_06792201.1| hypothetical protein BAZG_00434 [Brucella sp. NVSL 07-0026]
 gi|297247522|ref|ZP_06931240.1| DNA gyrase, B subunit [Brucella abortus bv. 5 str. B3196]
 gi|189018952|gb|ACD71674.1| DNA gyrase subunit B [Brucella abortus S19]
 gi|225618323|gb|EEH15366.1| DNA gyrase, B subunit [Brucella ceti str. Cudo]
 gi|237789434|gb|EEP63644.1| DNA gyrase, B subunit [Brucella abortus str. 2308 A]
 gi|260096510|gb|EEW80386.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260669524|gb|EEX56464.1| DNA gyrase subunit B [Brucella abortus bv. 4 str. 292]
 gi|260671360|gb|EEX58181.1| DNA gyrase subunit B [Brucella abortus bv. 2 str. 86/8/59]
 gi|260874531|gb|EEX81600.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|260916865|gb|EEX83726.1| DNA gyrase subunit B [Brucella abortus bv. 3 str. Tulya]
 gi|260919939|gb|EEX86592.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261296007|gb|EEX99503.1| hypothetical protein BAHG_00433 [Brucella pinnipedialis B2/94]
 gi|261300221|gb|EEY03718.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261303684|gb|EEY07181.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261739225|gb|EEY27221.1| DNA gyrase subunit B [Brucella sp. F5/99]
 gi|261741206|gb|EEY29132.1| DNA gyrase subunit B [Brucella suis bv. 5 str. 513]
 gi|262551783|gb|EEZ07773.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|264660052|gb|EEZ30313.1| hypothetical protein BALG_00432 [Brucella pinnipedialis M292/94/1]
 gi|294820117|gb|EFG37116.1| hypothetical protein BAZG_00434 [Brucella sp. NVSL 07-0026]
 gi|297174691|gb|EFH34038.1| DNA gyrase, B subunit [Brucella abortus bv. 5 str. B3196]
          Length = 813

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 241/616 (39%), Positives = 354/616 (57%), Gaps = 26/616 (4%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           N  A   Y A SIR+L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+A 
Sbjct: 8   NSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAT 67

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
           L+ V+L+ +G  TV DNGRGIP + H K    S  E+I+T LHAGGKFD ++Y++SGGLH
Sbjct: 68  LVTVTLNADGSCTVTDNGRGIPTDIH-KEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 126

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS  L + + R   I    F+ G+  +PL       ++ GT ++F P P  
Sbjct: 127 GVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSFLPSPDT 186

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     FD   L +  +  A+L+  V+   +  +    K         ++ GGL  +++ 
Sbjct: 187 FS-MVEFDYETLERRLRELAFLNSGVRIKLADRRHADVKEQE-----LHYDGGLVEFVKY 240

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             +++  +  E    ++EK G    TVE A+ W +    ++  + N I   +GGTH +G 
Sbjct: 241 IDQSKKSLLEEPIYIRSEKDG---MTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGF 297

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR I  YA+ +    K  + +  DD       +LSV + +P+F+ QTK KLVS + 
Sbjct: 298 RGALTRQITGYADSSGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEV 357

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
           +  VE  + +    +L ++P     ++E VI+ +  R   RK R++ RK+ +    LPGK
Sbjct: 358 RPVVEGLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDITRKSNLSVTSLPGK 417

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +     +E+FIVEGDSAGGSAK  R+R NQA+LPLRGKILNV     +++ ++ Q
Sbjct: 418 LADCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQ 477

Query: 513 IMDLVQALGCRTRSQYRE----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +  L+ ALG             + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE
Sbjct: 478 VGTLITALGTSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIE 537

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS-Q 627
           + H+++  PPL+++T+G  S Y  +E   +  L E          ++     GEM A   
Sbjct: 538 RGHIYIAQPPLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELVT-----GEMRAGPD 592

Query: 628 LKETAMDANKRTLLRV 643
           L+    D   RTL ++
Sbjct: 593 LRSVVED--ARTLRQL 606



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 9/112 (8%)

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
            + PP+ R  +  K            +L+     G+  + + R+KGLGEM A QL ET +
Sbjct: 710 FMEPPVLR--RKDKVE---SLSGPVALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETTL 764

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D N R+LL+V++N       D     ++LMG + + R +FIQ+ A  + ++ 
Sbjct: 765 DPNVRSLLQVKVNDAT----DADSLFSRLMGDEVEPRREFIQDNALNVANLD 812


>gi|62289106|ref|YP_220899.1| DNA gyrase subunit B [Brucella abortus bv. 1 str. 9-941]
 gi|82699044|ref|YP_413618.1| DNA gyrase subunit B [Brucella melitensis biovar Abortus 2308]
 gi|256368589|ref|YP_003106095.1| DNA gyrase subunit B [Brucella microti CCM 4915]
 gi|62195238|gb|AAX73538.1| GyrB, DNA gyrase, B subunit [Brucella abortus bv. 1 str. 9-941]
 gi|82615145|emb|CAJ10078.1| Topoisomerase IV, subunit B:DNA gyrase, subunit B:DNA topoisomerase
           II:DNA gyrase, subunit B, C-terminal:ATP-binding region
           [Brucella melitensis biovar Abortus 2308]
 gi|255998747|gb|ACU47146.1| DNA gyrase subunit B [Brucella microti CCM 4915]
          Length = 810

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 241/616 (39%), Positives = 354/616 (57%), Gaps = 26/616 (4%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           N  A   Y A SIR+L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+A 
Sbjct: 5   NSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAT 64

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
           L+ V+L+ +G  TV DNGRGIP + H K    S  E+I+T LHAGGKFD ++Y++SGGLH
Sbjct: 65  LVTVTLNADGSCTVTDNGRGIPTDIH-KEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 123

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS  L + + R   I    F+ G+  +PL       ++ GT ++F P P  
Sbjct: 124 GVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSFLPSPDT 183

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     FD   L +  +  A+L+  V+   +  +    K         ++ GGL  +++ 
Sbjct: 184 FS-MVEFDYETLERRLRELAFLNSGVRIKLADRRHADVKEQE-----LHYDGGLVEFVKY 237

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             +++  +  E    ++EK G    TVE A+ W +    ++  + N I   +GGTH +G 
Sbjct: 238 IDQSKKSLLEEPIYIRSEKDG---MTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGF 294

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR I  YA+ +    K  + +  DD       +LSV + +P+F+ QTK KLVS + 
Sbjct: 295 RGALTRQITGYADSSGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEV 354

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
           +  VE  + +    +L ++P     ++E VI+ +  R   RK R++ RK+ +    LPGK
Sbjct: 355 RPVVEGLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDITRKSNLSVTSLPGK 414

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +     +E+FIVEGDSAGGSAK  R+R NQA+LPLRGKILNV     +++ ++ Q
Sbjct: 415 LADCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQ 474

Query: 513 IMDLVQALGCRTRSQYRE----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +  L+ ALG             + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE
Sbjct: 475 VGTLITALGTSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIE 534

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS-Q 627
           + H+++  PPL+++T+G  S Y  +E   +  L E          ++     GEM A   
Sbjct: 535 RGHIYIAQPPLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELVT-----GEMRAGPD 589

Query: 628 LKETAMDANKRTLLRV 643
           L+    D   RTL ++
Sbjct: 590 LRSVVED--ARTLRQL 603



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 9/112 (8%)

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
            + PP+ R  +  K            +L+     G+  + + R+KGLGEM A QL ET +
Sbjct: 707 FMEPPVLR--RKDKVE---SLSGPVALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETTL 761

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D N R+LL+V++N       D     ++LMG + + R +FIQ+ A  + ++ 
Sbjct: 762 DPNVRSLLQVKVNDAT----DADSLFSRLMGDEVEPRREFIQDNALNVANLD 809


>gi|254690434|ref|ZP_05153688.1| DNA gyrase subunit B [Brucella abortus bv. 6 str. 870]
 gi|260755982|ref|ZP_05868330.1| DNA gyrase subunit B [Brucella abortus bv. 6 str. 870]
 gi|260676090|gb|EEX62911.1| DNA gyrase subunit B [Brucella abortus bv. 6 str. 870]
          Length = 813

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 242/616 (39%), Positives = 354/616 (57%), Gaps = 26/616 (4%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           N  A   Y A SIR+L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+A 
Sbjct: 8   NSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAT 67

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
           L+ V+L+ +G  TV DNGRGIP + H K    S  E+I+T LHAGGKFD ++Y++SGGLH
Sbjct: 68  LVTVTLNADGSCTVTDNGRGIPTDIH-KEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 126

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS  L + + R   I    F+ G+  +PL       ++ GT ++F P P  
Sbjct: 127 GVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSFLPSPDT 186

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     FD   L +  +  A+L+  V+   +  +    K         ++ GGL  +++ 
Sbjct: 187 FS-MVEFDYETLERRLRELAFLNSGVRIKLADRRHADVKEQE-----LHYDGGLVEFVKY 240

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             +++  +  E    ++EK G    TVE A+ W +    ++  + N I   +GGTH +G 
Sbjct: 241 IDQSKKSLLEEPIYIRSEKDG---MTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGF 297

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR I  YA+ +    K  + +  DD       +LSV + +P+F+ QTK KLVS + 
Sbjct: 298 RGALTRQITGYADSSGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEV 357

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
           +  VE  + +    +L ++P     ++E VI+ +  R   RK R++ RK+ +    LPGK
Sbjct: 358 RPVVEGLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDITRKSNLSVTSLPGK 417

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +     +E+FIVEGDSAGGSAK  R+R NQA+LPLRGKILNV     +++ ++ Q
Sbjct: 418 LADCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQ 477

Query: 513 IMDLVQALGCRTRSQYRE----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +  L+ ALG             E LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE
Sbjct: 478 VGTLITALGTSIGKDETHGFNAEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIE 537

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS-Q 627
           + H+++  PPL+++T+G  S Y  +E   +  L E          ++     GEM A   
Sbjct: 538 RGHIYIAQPPLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELVT-----GEMRAGPD 592

Query: 628 LKETAMDANKRTLLRV 643
           L+    D   RTL ++
Sbjct: 593 LRSVVED--ARTLRQL 606



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 9/112 (8%)

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
            + PP+ R  +  K            +L+     G+  + + R+KGLGEM A QL ET +
Sbjct: 710 FMEPPVLR--RKDKVE---SLSGPVALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETTL 764

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D N R+LL+V++N       D     ++LMG + + R +FIQ+ A  + ++ 
Sbjct: 765 DPNVRSLLQVKVNDAT----DADSLFSRLMGDEVEPRREFIQDNALNVANLD 812


>gi|268604557|ref|ZP_06138724.1| DNA gyrase subunit B [Neisseria gonorrhoeae PID1]
 gi|268588688|gb|EEZ53364.1| DNA gyrase subunit B [Neisseria gonorrhoeae PID1]
          Length = 796

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 228/601 (37%), Positives = 342/601 (56%), Gaps = 24/601 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95
            +   + Y A SI++LEGLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V DNGRG+P   HPK   +S  E+I+T LHAGGKFDN++Y+ISGGLH
Sbjct: 62  KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD + +T+ R       +F RG    PL+      +K+GT + F    + 
Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKIVGD-SDKKGTTVRFLAGTET 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           FG+   +    L K  +  ++L+  V    + +++        + E F   GG+  ++Q 
Sbjct: 180 FGNI-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
               ++ +  +IF    EK G    +VE A+ W +     +  + N I   +GGTH + L
Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R  +TR I  Y E  +   K  +    DD+      +LSV + +P+F+ QTK KLVS + 
Sbjct: 289 RQVMTRTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEI 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
              V   +      +L +NP EA  +   +++ +  R   RK RE+ R+   +  L LPG
Sbjct: 349 GPVVNEVINQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSA Q R+R  QA+LPL+GKILNV  A  EK+  +Q
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALG    + ++  E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ 
Sbjct: 469 EVATLITALGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPL++   G +  Y  DE  K + L          +   R      +  ++L +
Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVSDGR-----TIEGAELAD 583

Query: 631 T 631
           T
Sbjct: 584 T 584



 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%)

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           ++ +G      +D +  +  L+      +  + I R+KGLGEM   QL ET MD   R L
Sbjct: 698 KLYKGENE---YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPTVRRL 754

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           L+V I   +       +    LMG + + R  FI+  A    ++  
Sbjct: 755 LKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796


>gi|299133396|ref|ZP_07026591.1| DNA gyrase, B subunit [Afipia sp. 1NLS2]
 gi|298593533|gb|EFI53733.1| DNA gyrase, B subunit [Afipia sp. 1NLS2]
          Length = 809

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 242/580 (41%), Positives = 338/580 (58%), Gaps = 14/580 (2%)

Query: 30  PDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDE 88
            +    +    +  Y A SIR+L+GL+ VR RPGMYIG TD+   LHH+  EV+DN +DE
Sbjct: 2   SEPARKSTSEPAAEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDE 61

Query: 89  VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148
           V+AG+A  +EV+L+ +  +TV D+GRGIP + H K    S  E+I+T LHAGGKFD ++Y
Sbjct: 62  VLAGHATRVEVTLNPDNSVTVYDDGRGIPTDIH-KGEGISAAEVIMTQLHAGGKFDQNSY 120

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS +L + + R +     +F  G  ++PL        KRGT +T
Sbjct: 121 KVSGGLHGVGVSVVNALSSKLALRIWRNDKEHYIEFKHGDAVAPLVVVGDANGKRGTEVT 180

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F    + F     +D   L    +  A+L+  V    S  +   E+      EE ++ GG
Sbjct: 181 FLASTETFT-HTDYDFDTLEHRLRELAFLNSGVHILLSDKRHAVERR-----EELHYEGG 234

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEG 327
           ++ +++    N+  +       + E+ G    +VE A+ W +   E    + N I   +G
Sbjct: 235 VEAFVKFLDRNKKAVVDTPIVMRAEQNGI---SVEVAMWWNDSYHENVLCFTNNIPQRDG 291

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           GTH +G R ALTR I  YAE    K  IS+  DD       +LSV + +P+F+ QTK KL
Sbjct: 292 GTHLAGFRGALTRQITGYAEGMAKKEKISLTGDDCREGLTAVLSVKVPDPKFSSQTKDKL 351

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
           VS + +  VEN L      +L ++P EA  ++  VIE +  R   RK R+   RK A+  
Sbjct: 352 VSSEVRPVVENVLNASLSAWLEEHPTEAKTIVGKVIEAAAAREAARKARDLTRRKGALDI 411

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR  QAVLPLRGKILNV  A  +K
Sbjct: 412 ASLPGKLADCQERDPAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERARFDK 471

Query: 507 IRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           + +++QI  L+ ALG        +   LRY K+I+MTDADVDGAHI +LLLTFF+++M  
Sbjct: 472 MLSSEQIGTLITALGTGIGRDDFDLSKLRYHKIIVMTDADVDGAHIRTLLLTFFFRQMPS 531

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605
           LIE  HL++  PPL+++T+G    Y  DE   +  L E  
Sbjct: 532 LIEGGHLYIAQPPLYKVTRGKSEQYLKDERALEDYLIETG 571



 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 5/87 (5%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            + E     G+  +   R+KGLGEM  +QL ET +D N R+LL+V+I      +    D 
Sbjct: 727 SLFEAVTDAGRKGVTYQRYKGLGEMNPNQLWETTLDTNARSLLQVKI----REVDAADDI 782

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R +FIQ+ +    +V 
Sbjct: 783 FTKLMGDIVEPRREFIQDNSLDA-NVD 808


>gi|17988106|ref|NP_540740.1| DNA gyrase subunit B [Brucella melitensis bv. 1 str. 16M]
 gi|225851665|ref|YP_002731898.1| DNA gyrase subunit B [Brucella melitensis ATCC 23457]
 gi|256045916|ref|ZP_05448790.1| DNA gyrase subunit B [Brucella melitensis bv. 1 str. Rev.1]
 gi|256112631|ref|ZP_05453552.1| DNA gyrase subunit B [Brucella melitensis bv. 3 str. Ether]
 gi|256264825|ref|ZP_05467357.1| DNA gyrase subunit B [Brucella melitensis bv. 2 str. 63/9]
 gi|260563202|ref|ZP_05833688.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|265992329|ref|ZP_06104886.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265994072|ref|ZP_06106629.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|17983859|gb|AAL53004.1| DNA gyrase subunit b [Brucella melitensis bv. 1 str. 16M]
 gi|225640030|gb|ACN99943.1| DNA gyrase, B subunit [Brucella melitensis ATCC 23457]
 gi|260153218|gb|EEW88310.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|262765053|gb|EEZ10974.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263003395|gb|EEZ15688.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263095280|gb|EEZ18907.1| DNA gyrase subunit B [Brucella melitensis bv. 2 str. 63/9]
 gi|326408144|gb|ADZ65209.1| DNA gyrase subunit B [Brucella melitensis M28]
 gi|326537855|gb|ADZ86070.1| DNA gyrase, B subunit [Brucella melitensis M5-90]
          Length = 813

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 241/616 (39%), Positives = 354/616 (57%), Gaps = 26/616 (4%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           N  A   Y A SIR+L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+A 
Sbjct: 8   NSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAT 67

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
           L+ V+L+ +G  TV DNGRGIP + H K    S  E+I+T LHAGGKFD ++Y++SGGLH
Sbjct: 68  LVTVTLNADGSCTVTDNGRGIPTDIH-KEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 126

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS  L + + R   I    F+ G+  +PL       ++ GT ++F P P  
Sbjct: 127 GVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSFLPSPDT 186

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     FD   L +  +  A+L+  V+   +  +    K         ++ GGL  +++ 
Sbjct: 187 FS-MVEFDYETLERRLRELAFLNSGVRIKLADRRHADVKEQE-----LHYDGGLVEFVKY 240

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             +++  +  E    ++EK G    TVE A+ W +    ++  + N I   +GGTH +G 
Sbjct: 241 TDQSKKSLLEEPIYIRSEKDG---MTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGF 297

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR I  YA+ +    K  + +  DD       +LSV + +P+F+ QTK KLVS + 
Sbjct: 298 RGALTRQITGYADSSGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEV 357

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
           +  VE  + +    +L ++P     ++E VI+ +  R   RK R++ RK+ +    LPGK
Sbjct: 358 RPVVEGLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDITRKSNLSVTSLPGK 417

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +     +E+FIVEGDSAGGSAK  R+R NQA+LPLRGKILNV     +++ ++ Q
Sbjct: 418 LADCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQ 477

Query: 513 IMDLVQALGCRTRSQYRE----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +  L+ ALG             + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE
Sbjct: 478 VGTLITALGTSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIE 537

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS-Q 627
           + H+++  PPL+++T+G  S Y  +E   +  L E          ++     GEM A   
Sbjct: 538 RGHIYIAQPPLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELVT-----GEMRAGPD 592

Query: 628 LKETAMDANKRTLLRV 643
           L+    D   RTL ++
Sbjct: 593 LRSVVED--ARTLRQL 606



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 9/112 (8%)

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
            + PP+ R  +  K            +L+     G+  + + R+KGLGEM A QL ET +
Sbjct: 710 FMEPPVLR--RKDKVE---SLSGPVALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETTL 764

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D N R+LL+V++N       D     ++LMG + + R +FIQ+ A  + ++ 
Sbjct: 765 DPNVRSLLQVKVNDAT----DADSLFSRLMGDEVEPRREFIQDNALNVANLD 812


>gi|330817903|ref|YP_004361608.1| DNA topoisomerase IV, B subunit [Burkholderia gladioli BSR3]
 gi|327370296|gb|AEA61652.1| DNA topoisomerase IV, B subunit [Burkholderia gladioli BSR3]
          Length = 661

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 236/674 (35%), Positives = 353/674 (52%), Gaps = 42/674 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +  +  Y  +SI++L+GLEPV+ RPGMY   T  +   H+  EVIDNA DE + GY 
Sbjct: 1   MSTKKPAAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYG 57

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151
             I V+L  +  ++V D+GRGIP   HP       +EI+ T LHAGGKFD      Y  S
Sbjct: 58  KQIIVTLHADQSVSVEDDGRGIPFGMHP-DEGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--LEKKEKVRNKRGTRITF 209
           GGLHGVG+SV NAL+  L VTV R+       F+ G  + P   +   +   K GTR+  
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWREGKFAELGFAHGDVVKPLVTQNAGRGEKKSGTRVRV 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD K F          L ++ +SKA L   V+     +K         E++ + +  GL
Sbjct: 177 WPDGKYFDSPN-LPLGELQRLLRSKAVLLPGVEVVLVTEK-------TGERQSWKYEDGL 228

Query: 270 KTYLQTKLENRSLISSEIFTG-------KTEKKGTHRGTVEWAIAWCEENP-EITSYCNT 321
           + YL  ++    L+                +          W +AW EE      SY N 
Sbjct: 229 RGYLLDEMNGSELLIPLFEGERFADAKTSGDDSFADGEGASWVVAWSEEGSLTRESYVNL 288

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFA 380
           I T  GGTHESGLR  L + +K + EL     + + ++++D+      +LS  + +P+F 
Sbjct: 289 IPTPAGGTHESGLRDGLFQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQ 348

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQ K +L S DA + V +  R   + +L Q+     KL + VI++++ R R  ++ E  +
Sbjct: 349 GQIKERLNSRDAVKLVSSFTRPALELWLNQHVEHGKKLADLVIKQAQARTRAGQKVEKRK 408

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
            + +  L  PGKL DC        ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN  
Sbjct: 409 SSGVAVL--PGKLTDCETQDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTW 466

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLLT 557
               +++  N ++ D+  A+G    +        +LRY K+ I++DADVDGAHI  LLLT
Sbjct: 467 ETERDRLFANNEVHDISVAIGVDPHAPDDHVDLSNLRYGKICILSDADVDGAHIQVLLLT 526

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--K 609
            F++    LIE+ H+F+  PPLFR+    +G K    +YA D+   + IL++ +K G  +
Sbjct: 527 LFFKHFPQLIERGHVFVARPPLFRVDAPARGKKPAQKLYALDDGELEAILDKLRKDGVRE 586

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KAD 668
            +  ISRFKGLGEM A QL +T M+ + R L  + +         T   +  LMG  +A 
Sbjct: 587 TQWSISRFKGLGEMSAEQLWDTTMNPDTRRLAPIALGGLDYDA--TVSRMTMLMGKGEAS 644

Query: 669 ERFKFIQERASFID 682
            R  +++E+ + ++
Sbjct: 645 ARRSWLEEKGNDVE 658


>gi|91789025|ref|YP_549977.1| DNA topoisomerase IV subunit B [Polaromonas sp. JS666]
 gi|91698250|gb|ABE45079.1| DNA topoisomerase IV subunit B [Polaromonas sp. JS666]
          Length = 659

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 241/669 (36%), Positives = 352/669 (52%), Gaps = 42/669 (6%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            +AS+ Y   SIR+L+GLEPV+ RPGMY   T      H+  EV+DN+ DE +AGY   I
Sbjct: 6   STASNEYSEGSIRVLKGLEPVKQRPGMY---TRTDNPLHIIQEVLDNSADEALAGYGKKI 62

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA---GGKFDNSTYEISGGL 154
           +V+L  +G ++V D+GRGIP   HP+      +E++ T LHA     K     Y  SGGL
Sbjct: 63  KVTLHTDGSVSVEDDGRGIPFGLHPE-EKAPVVELVFTRLHAGGKFDKGKGGAYSFSGGL 121

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR--GTRITFRPD 212
           HGVG+SV NALS  L V   R+  +    FS G  +  L+ ++     R  GT +   PD
Sbjct: 122 HGVGVSVTNALSKRLEVMSYREGMVARLVFSGGDVIEKLQLRKAAEGDRKCGTSVRAWPD 181

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            K F   A    A L  + +SKA L   V    + +K         E + + + GGL+ Y
Sbjct: 182 AKYFES-AALPMAELTHLLRSKAVLMPGVTVTLTNEK-------TKETQTWAYKGGLRDY 233

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC------EENPEITSYCNTILTDE 326
           L   L    +I   +F G+     +H    E   A        +  P   SY N I T  
Sbjct: 234 LMQTLTADPVI--PMFEGEGFADASHDSFAEGEGAQWCVAFTEDGQPMRESYVNLIPTSA 291

Query: 327 GGTHESGLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GGTHESGLR  L   +K + +  +   + + ++ +D+   A  +LS  + +P+F GQ K 
Sbjct: 292 GGTHESGLRDGLFTAVKSFIDLHSLLPKGVKLLPEDVFARASYVLSAKVLDPQFQGQIKE 351

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIR 445
           +L S DA R V + +R   + +L Q+     KL E  I+ ++ R +  ++ E  + + + 
Sbjct: 352 RLNSRDAVRLVSSFVRPTLELWLNQHVDYGRKLAELAIKAAQTRQKAGQKVEKRKGSGVA 411

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
            L  PGKL DC        E+F+VEGDSAGGSAK  R++ +QA+LPLRGK+LN      +
Sbjct: 412 VL--PGKLTDCESKDLAHNEVFLVEGDSAGGSAKMGRDKESQAILPLRGKVLNTWEVERD 469

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
           ++  N +I D+  A+G      + + D   LRY KV I++DADVDG+HI  LLLT F++ 
Sbjct: 470 RLFANTEIHDIAVAIGVDPHGPHDKPDLSGLRYGKVCILSDADVDGSHIQVLLLTLFFRH 529

Query: 563 MYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKIEI 614
              LIE  ++++  PPLFR+    +G K    VYA DE     IL++ +K G  +    I
Sbjct: 530 FPKLIEAGNVYVARPPLFRVDAPARGKKPASKVYALDEGELTAILDKLRKDGVRENAWSI 589

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673
           SRFKGLGEM A QL ET ++ + R LL V++         T+  I KLMG  +A  R + 
Sbjct: 590 SRFKGLGEMSAEQLWETTLNPDTRRLLPVQL--GNFDFLQTESLITKLMGKGEAAARREL 647

Query: 674 IQERASFID 682
           ++     ++
Sbjct: 648 MELHGDAVE 656


>gi|163745039|ref|ZP_02152399.1| DNA gyrase subunit B [Oceanibulbus indolifex HEL-45]
 gi|161381857|gb|EDQ06266.1| DNA gyrase subunit B [Oceanibulbus indolifex HEL-45]
          Length = 804

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 221/578 (38%), Positives = 334/578 (57%), Gaps = 17/578 (2%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
                  Y A SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DN +DE +AG+A+
Sbjct: 4   TAQTPQEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGHAD 63

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            + V++  +  ++V DNGRGIPV  H +    S  E+I+T LHAGGKFD+++Y++SGGLH
Sbjct: 64  AVTVTIHEDSSVSVSDNGRGIPVGIHEE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGGLH 122

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD L + + R+      +F  G     LE      ++ GT + F      
Sbjct: 123 GVGVSVVNALSDWLELRIWREGKEHIARFEGGFTTKHLEVLGDT-DRTGTEVRFMASTDT 181

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F ++  +    L K  +  A+L+  V+   + ++        P + E Y+ GG+K +++ 
Sbjct: 182 FSNR-EYIFETLEKRLRELAFLNSGVRIILTDER-----PVEPLRTELYYDGGVKEFVKY 235

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
              +++ +  E      E+       +E A+ W +   E    + N I   +GGTH +G 
Sbjct: 236 LDRHKTSVMPEPIFITGERDDI---GIEVAMWWNDSYHENVLPFTNNIPQRDGGTHMAGF 292

Query: 335 RVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR I  YA+ +   +   I+   DD       +LSV + +P+F+ QTK KLVS + 
Sbjct: 293 RGALTRTINGYAQSSGIAKREKINFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEV 352

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
           +  VE  + +    +  +NP EA +++  ++E ++ R   RK RE   RK+A+    L G
Sbjct: 353 RPAVEGLVNEKLAEWFEENPAEAKQIVGKIVEAAQAREAARKARELTRRKSAMDVNFLAG 412

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL DCS+     TE+F+VEGDSAGGSA+  R+R  QA+LPL+GKILNV  A  +++  +Q
Sbjct: 413 KLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQ 472

Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           +I +LV ALG            LRY K++IMTDADVDGAHI +LLLTFF+++M +LIE  
Sbjct: 473 EIGNLVMALGTGIGRDEFNLSKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQMPELIEHG 532

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           HL++  PPL+++++G   VY  D+   +  L +    G
Sbjct: 533 HLYIAQPPLYKVSRGKSEVYLKDQAAMEDYLIQQGVDG 570



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L+     G+  + + R+KGLGEM   QL ET +D + RTLL+V +      + +  D 
Sbjct: 721 DLLDAIFAEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVRVED----MAEADDL 776

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R +FIQ+ A  ++++ 
Sbjct: 777 FTKLMGDVVEPRREFIQQNALSVENLD 803


>gi|297184292|gb|ADI20409.1| type IIa topoisomerase (DNA gyrase/topo II, topoisomerase IV), b
           subunit [uncultured alpha proteobacterium EB080_L43F08]
          Length = 805

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 231/578 (39%), Positives = 335/578 (57%), Gaps = 16/578 (2%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           +Q  S+ Y A SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DN +DE +A +A+
Sbjct: 4   DQIKSEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAKHAD 63

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            + V++  +  ++V DNGRG+PV  H +    S  E+I+T LHAGGKFD+++Y++SGGLH
Sbjct: 64  FVSVTIHADESVSVRDNGRGVPVGIHEE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGGLH 122

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD L + + R   I   +F  G  +  LE       + GT + F    + 
Sbjct: 123 GVGVSVVNALSDWLELKIWRDGKIHIARFEHGDTVKHLEIIGDANGETGTEVRFMASTET 182

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F ++  +    L    +  A+L+  VK     ++               + GG+K +++ 
Sbjct: 183 FSNR-EYVFKTLENRLRELAFLNSGVKIILRDERPTEHLETT-----LLYDGGVKEFVKF 236

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
              ++S +  +      EK      TVE A+ W +   E    + N I   +GGTH +G 
Sbjct: 237 LDRSKSSVIEDPIYIIGEKDDI---TVECAMWWNDSYHENVLPFTNNIPQRDGGTHIAGF 293

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR I  YA  +    K  +S   DD       +LSV + +P+F+ QTK KLVS + 
Sbjct: 294 RGALTRTINNYAASSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEV 353

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
           +  VE+ + +    +  +NP  A +++  ++E +  R   RK RE   RKTA     LPG
Sbjct: 354 RPVVESLMNEKLSEWFEENPAHAKEIVTKIVEAALAREAARKARELTRRKTAFGGTSLPG 413

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC Q     +E+FIVEGDSAGGSAKQ R+R NQAVLPLRGKILN+  A  +K+  ++
Sbjct: 414 KLADCQQKDPSLSEIFIVEGDSAGGSAKQGRSRENQAVLPLRGKILNIERARFDKMLTSE 473

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           QI +L+ ALG    R ++    LRY KV+IMTDADVDGAHI +LLLTFF+++M +LIE  
Sbjct: 474 QITNLITALGTGIGRDEFDISKLRYHKVVIMTDADVDGAHIRTLLLTFFFRQMPELIEGG 533

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +L++  PPL+++ +G   VY  D+   +  L E    G
Sbjct: 534 YLYIAQPPLYKVARGKSEVYLKDQVSLEDFLAEQGIEG 571



 Score =  130 bits (326), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L      G+  + + R+KGLGEM   QL ET +D   R  L+V++      L D  D 
Sbjct: 722 DLLNIVNSEGEKGLSLQRYKGLGEMNPGQLWETTLDPEARIFLQVKVED----LADADDL 777

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R +FIQ+ A  ++++ 
Sbjct: 778 FTKLMGDVVEPRREFIQQNALSVENLD 804


>gi|241206955|ref|YP_002978051.1| DNA gyrase subunit B [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240860845|gb|ACS58512.1| DNA gyrase, B subunit [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 811

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 234/577 (40%), Positives = 340/577 (58%), Gaps = 16/577 (2%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEV 89
              +      S  Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE 
Sbjct: 2   SDTSATENGVSTEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEA 61

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
           +AG+A+++ V+L+ +G +TV DNGRGIP + H      S  E+I+T LHAGGKFD ++Y+
Sbjct: 62  LAGHADIVTVTLNPDGSVTVTDNGRGIPTDIH-TGEGVSAAEVIMTQLHAGGKFDQNSYK 120

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  L + + R + I    F+ G+  +PL+      N+ GT ++F
Sbjct: 121 VSGGLHGVGVSVVNALSVWLKLKIRRHDKIHEMSFTHGVADAPLKVTGDAPNETGTEVSF 180

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P    F     FD   L    +  A+L+  V+   +  +    K     +EE  + GGL
Sbjct: 181 MPSTGTFT-MTEFDYGTLEHRLRELAFLNSGVRILLTDKRHSDIK-----QEELRYDGGL 234

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328
           + ++      +  +  +      EK G    TVE A+ W +   E    + N I   +GG
Sbjct: 235 EAFVAYLDRAKKSLVDKPVAIHGEKDGI---TVEVAMWWNDSYHENVLCFTNNIPQRDGG 291

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  YA+ +   +   +    +D       +LSV + +P+F+ QTK K
Sbjct: 292 THMAGFRAALTRQVVSYADSSGITKREKVTLQGEDCREGLTAVLSVKVPDPKFSSQTKDK 351

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           LVS + +  VE+ + +    +  ++P EA  L+  V+E +  R   RK RE   RK A+ 
Sbjct: 352 LVSSEVRPVVESLVNEALSTWFEEHPSEAKILVGKVVEAAAAREAARKARELTRRKGALD 411

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS+     +E+F+VEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  +
Sbjct: 412 IASLPGKLADCSERDPTKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 471

Query: 506 KIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           K+ ++Q+I  L+ ALG          E LRY K+IIMTDADVDGAHI +LLLTFF+++M 
Sbjct: 472 KMLSSQEIGTLITALGTGIGKDEFNVEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 531

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
            LIE+ HL++  PPL+++++G    Y  DE+  ++ L
Sbjct: 532 QLIERGHLYIAQPPLYKVSRGKSVQYLKDEKALEEYL 568



 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 4/88 (4%)

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           + +L+     G+  + + R+KGLGEM A QL ET +D N R+LL+V +N       D   
Sbjct: 727 RALLDAIFASGRKGLTMQRYKGLGEMNAEQLWETTLDPNVRSLLQVRVNDAT----DADG 782

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
              +LMG + + R +FIQE A  + ++ 
Sbjct: 783 LFARLMGDEVEPRREFIQENALSVANLD 810


>gi|114769640|ref|ZP_01447250.1| DNA gyrase subunit B [alpha proteobacterium HTCC2255]
 gi|114549345|gb|EAU52227.1| DNA gyrase subunit B [alpha proteobacterium HTCC2255]
          Length = 805

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 231/578 (39%), Positives = 335/578 (57%), Gaps = 16/578 (2%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           +Q  S+ Y A SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DN +DE +A +A+
Sbjct: 4   DQIKSEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAKHAD 63

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            + V++  +  ++V DNGRG+PV  H +    S  E+I+T LHAGGKFD+++Y++SGGLH
Sbjct: 64  FVSVTIHADESVSVRDNGRGVPVGIHEE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGGLH 122

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD L + + R   I   +F  G  +  LE       + GT + F    + 
Sbjct: 123 GVGVSVVNALSDWLELKIWRDGKIHIARFEHGDTVKHLEIIGDANGETGTEVRFMASTET 182

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F ++  +    L    +  A+L+  VK     ++               + GG+K +++ 
Sbjct: 183 FSNR-EYVFKTLENRLRELAFLNSGVKIILRDERPTEHLETT-----LLYDGGVKEFVKF 236

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
              ++S +  +      EK      TVE A+ W +   E    + N I   +GGTH +G 
Sbjct: 237 LDRSKSSVIEDPIYIIGEKDDI---TVECAMWWNDSYHENVLPFTNNIPQRDGGTHIAGF 293

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR I  YA  +    K  +S   DD       +LSV + +P+F+ QTK KLVS + 
Sbjct: 294 RGALTRTINNYAASSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEV 353

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
           +  VE+ + +    +  +NP  A +++  ++E +  R   RK RE   RKTA     LPG
Sbjct: 354 RPVVESLMNEKLSEWFEENPAHAKEIVTKIVEAALAREAARKARELTRRKTAFGGTSLPG 413

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC Q     +E+FIVEGDSAGGSAKQ R+R NQAVLPLRGKILN+  A  +K+  ++
Sbjct: 414 KLADCQQKDPSLSEIFIVEGDSAGGSAKQGRSRENQAVLPLRGKILNIERARFDKMLTSE 473

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           QI +L+ ALG    R ++    LRY KV+IMTDADVDGAHI +LLLTFF+++M +LIE  
Sbjct: 474 QITNLITALGTGIGRDEFDISKLRYHKVVIMTDADVDGAHIRTLLLTFFFRQMPELIEGG 533

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +L++  PPL+++ +G   VY  D+   +  L E    G
Sbjct: 534 YLYIAQPPLYKVARGKSEVYLKDQVSLEDFLAEQGIEG 571



 Score =  130 bits (326), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L      G+  + + R+KGLGEM   QL ET +D   R  L+V++      L D  D 
Sbjct: 722 DLLNIVNSEGEKGLSLQRYKGLGEMNPGQLWETTLDPEARIFLQVKVED----LADADDL 777

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R +FIQ+ A  ++++ 
Sbjct: 778 FTKLMGDVVEPRREFIQQNALSVENLD 804


>gi|262374722|ref|ZP_06067994.1| DNA gyrase, B subunit [Acinetobacter junii SH205]
 gi|262310378|gb|EEY91470.1| DNA gyrase, B subunit [Acinetobacter junii SH205]
          Length = 822

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 228/581 (39%), Positives = 344/581 (59%), Gaps = 19/581 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85
                S +   Q+    YD+SSI++L GL+ VR RPGMYIG TD+   LHH+  EV+DNA
Sbjct: 2   SSESQSVSQTEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNA 61

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AG+ + I V++  +  ++V DNGRGIP + HP+    S  E+ILT LHAGGKFD+
Sbjct: 62  IDEALAGHCDEILVTIHEDESVSVSDNGRGIPTDIHPE-EGVSAAEVILTILHAGGKFDD 120

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +LH+T+ R   I  Q++  G P  PL+   K  +K GT
Sbjct: 121 NSYKVSGGLHGVGVSVVNALSKKLHLTIQRAGQIHEQEYCHGDPQYPLKVVGKT-DKTGT 179

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            + F P  ++   +  F    L +  +  ++L+  V+     ++   E         + +
Sbjct: 180 TVRFWPS-ELTFSQTIFSVDILARRLRELSFLNAGVRIVLRDERVNLENV-------YDY 231

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GGL  +++   E ++ ++           G     VE A+ W +     +  + N I  
Sbjct: 232 EGGLSEFVKYINEGKTHLNEIFHFTTDADNGI---GVEVALQWNDSYQENVRCFTNNIPQ 288

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTRG+  Y E      K  +++  DD       I+SV + +P+F+ Q
Sbjct: 289 KDGGTHLAGFRAALTRGLNSYMENENLLKKEKVAVSGDDAREGLTAIISVKVPDPKFSSQ 348

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441
           TK KLVS + +  VE A+   F  YL++NP  A  +   +I+ +  R   R+      RK
Sbjct: 349 TKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARRAREMTRRK 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           +A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  
Sbjct: 409 SALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +K+ ++Q++  L+ ALGC   R +Y  + LRY K+IIMTDADVDG+HI +LLLTFF+
Sbjct: 469 ARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFF 528

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++M +L+E+ H+++  PPL+++ +G +  Y  D +  +  L
Sbjct: 529 RQMPELVERGHIYIAQPPLYKLKKGKQEQYIKDNDALETYL 569



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
             ++ +   +  +  + I R+KGLGEM A QL ET MD   R +L+V I+  +    +  
Sbjct: 738 FHQVWQHILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRHMLQVTIDDAI----EAD 793

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVGT 686
              + LMG   + R  FI+E A   D +  
Sbjct: 794 RMFSCLMGDDVEPRRAFIEENALNAD-IDA 822


>gi|330952329|gb|EGH52589.1| DNA gyrase subunit B [Pseudomonas syringae Cit 7]
          Length = 727

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 226/569 (39%), Positives = 343/569 (60%), Gaps = 19/569 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S +  YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I
Sbjct: 2   SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            + +  +  +TV DNGRGIPV+ H K    S  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  SIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+I F+P  + F 
Sbjct: 121 GVSVVNALSEILLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDTTGTQIHFKPSAETFK 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++   
Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++           G     VE A+ W +     +  + N I   +GGTH  G R 
Sbjct: 232 TNKTPVNQVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 289 ALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPGKL
Sbjct: 349 AVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 468

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++
Sbjct: 469 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++  PPL+++ +G +  Y  D+E  ++ +
Sbjct: 529 YIAQPPLYKVKKGKQEQYIKDDEAMEEYM 557


>gi|299066932|emb|CBJ38127.1| DNA topoisomerase IV, subunit B [Ralstonia solanacearum CMR15]
          Length = 661

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 249/673 (36%), Positives = 357/673 (53%), Gaps = 45/673 (6%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           S +  Y  +SI++L+GLEPV+ RPGMY   T      H+  EVIDNA DE + GY   I+
Sbjct: 2   SKTPQYSEASIKVLKGLEPVKQRPGMY---TRTDNPLHIVQEVIDNAADEALGGYGKWIQ 58

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLH 155
           V+L  +G ++V D  RGIPV  HP+      +EI+ T LHAGGKFD      Y  SGGLH
Sbjct: 59  VTLHKDGSVSVEDEARGIPVGIHPE-EGVPVVEIVFTRLHAGGKFDKGRGGAYAFSGGLH 117

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS--PLEKKEKVRNKRGTRITFRPDP 213
           GVG+SV NALS  L V V R  ++ +  FS G  +      + E+   K GTR+   PD 
Sbjct: 118 GVGVSVTNALSTRLEVAVWRDGSVSTLAFSGGDVIEALATRRAERGEKKHGTRVRVWPDG 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F  +     A L ++ +SKA L   VK   + +K         E  E+ +  GL+ YL
Sbjct: 178 KYFDSEN-IPQAELQRLLRSKAVLLPGVKVSLTIEKS-------GETIEWQYDQGLRGYL 229

Query: 274 QTKLENRSLISSEIFTGK----------TEKKGTHRGTVEWAIAWCEENPE-ITSYCNTI 322
              L   S     I   +           E+         W +AW +E      SY N I
Sbjct: 230 IESLAQGSGADPVIPLFEGEHFADPDRLGEEGFAFGEGASWVVAWTDEGSPVRESYVNLI 289

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAG 381
            T  GGTHESGLR  L + +K + E+     + + ++S+D+   A  +LS  + +P+F G
Sbjct: 290 PTPAGGTHESGLREGLFQAVKSFVEMHALCPKGVKLMSEDVFARASFVLSAKVLDPQFQG 349

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           Q K +L S DA R V    R   + +L Q+     KL E VI +++ R R  ++ E  + 
Sbjct: 350 QIKERLNSRDAVRLVSTFSRPALELWLNQHVEFGKKLAELVIRQAQARTRAAQKVEKKKG 409

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +  L  PGKL DC  +     ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN   
Sbjct: 410 SGVAVL--PGKLTDCESDDVSRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTWE 467

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTF 558
              +++  N ++ D+  A+G          D   LRY K+ I++DADVDGAHI  LLLT 
Sbjct: 468 TERDRLFANNEVHDIAVAIGVDPHGPTDSVDLSGLRYGKICILSDADVDGAHIQVLLLTL 527

Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KG 610
           F++    LI + ++ +  PPL+R+    +G K    +YA D+   + I ++ +K G  +G
Sbjct: 528 FFKHFPQLIGRGNVCVARPPLYRVDAPARGKKPAQKLYALDDGELEAIEDKLRKEGLKEG 587

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669
             +ISRFKGLGEM A QL ET M+ + R LL V I +     + T   +N LMG  +A  
Sbjct: 588 SWQISRFKGLGEMSAEQLWETTMNPDTRRLLPVSIGEPG--AEQTVHVMNMLMGKGEAGA 645

Query: 670 RFKFIQERASFID 682
           R  +++ R + ++
Sbjct: 646 RRTWLEARGNEVE 658


>gi|307729036|ref|YP_003906260.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia sp. CCGE1003]
 gi|307583571|gb|ADN56969.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia sp. CCGE1003]
          Length = 661

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 241/674 (35%), Positives = 358/674 (53%), Gaps = 42/674 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +  +  Y  +SI++L+GLEPV+ RPGMY   T  +   H+  EVIDNA DE + GY 
Sbjct: 1   MSTKKPNAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYG 57

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151
             I V+L  +  ++V D+GRGIP   HP+      +EI+ T LHAGGKFD      Y  S
Sbjct: 58  RQITVTLHADHSVSVEDDGRGIPFGLHPE-EGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITF 209
           GGLHGVG+SV NALS  L VTV R   + +  F+ G    PLE +   +   K GTR+T 
Sbjct: 117 GGLHGVGVSVTNALSTRLDVTVWRDGKVAALSFANGDVAKPLEVRAAAKGEKKSGTRVTA 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
             +PK F          L ++ +SKA L   V+     +K         E++ + +  GL
Sbjct: 177 WANPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVTLINEK-------TGEQQSWKYEDGL 228

Query: 270 KTYLQTKLENRSLISSEIFTGKT-------EKKGTHRGTVEWAIAWCEENP-EITSYCNT 321
           + YL   +    L+       +        E+         W +AW EE P    SY N 
Sbjct: 229 RGYLLEGMNGSDLLIPLFEGERYAENSRANEETFAEGEGAAWVVAWSEEGPLTRESYVNL 288

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFA 380
           I T  GGTHESGLR  L + +K + EL     + + ++++D+      +LS  + +P+F 
Sbjct: 289 IPTPAGGTHESGLREGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQ 348

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQ K +L S DA + V +  R   + +L Q+     KL + VI++++ R R  ++ E  +
Sbjct: 349 GQIKERLNSRDAVKLVASFARPALELWLNQHVEHGKKLADLVIKQAQARTRAGQKVEKRK 408

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
            + +  L  PGKL DC        ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN  
Sbjct: 409 SSGVAVL--PGKLTDCESTEISRNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTW 466

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLLT 557
               +++  N ++ D+  A+G    S   +    +LRY K+ I++DADVDG+HI  LLLT
Sbjct: 467 ETERDRLFANNEVHDISVAIGVDPHSPDDKVDLSNLRYGKICILSDADVDGSHIQVLLLT 526

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--K 609
            F++    LIE+ H+ +  PPLFR+    +G K    +YA DE   + IL++ +K G   
Sbjct: 527 LFFKHFPQLIERGHVCVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDGVRD 586

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KAD 668
            +  ISRFKGLGEM A QL +T M+ + R L  V + +           +  LMG  +A 
Sbjct: 587 TQWSISRFKGLGEMSAEQLWDTTMNPDTRRLTPVALGELDYDTTVA--RMTMLMGKGEAA 644

Query: 669 ERFKFIQERASFID 682
            R  +++E+ + ++
Sbjct: 645 SRRSWLEEKGNEVE 658


>gi|254713300|ref|ZP_05175111.1| DNA gyrase subunit B [Brucella ceti M644/93/1]
 gi|254716346|ref|ZP_05178157.1| DNA gyrase subunit B [Brucella ceti M13/05/1]
 gi|261218128|ref|ZP_05932409.1| hypothetical protein BAJG_01573 [Brucella ceti M13/05/1]
 gi|261321025|ref|ZP_05960222.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|260923217|gb|EEX89785.1| hypothetical protein BAJG_01573 [Brucella ceti M13/05/1]
 gi|261293715|gb|EEX97211.1| conserved hypothetical protein [Brucella ceti M644/93/1]
          Length = 813

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 241/616 (39%), Positives = 354/616 (57%), Gaps = 26/616 (4%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           N  A   Y A SIR+L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+A 
Sbjct: 8   NSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAT 67

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
           L+ V+L+ +G  TV DNGRGIP + H K    S  E+I+T LHAGGKFD ++Y++SGGLH
Sbjct: 68  LVTVTLNADGSCTVTDNGRGIPTDIH-KEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 126

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS  L + + R   I    F+ G+  +PL       ++ GT ++F P P  
Sbjct: 127 GVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSFLPSPDT 186

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     FD   L +  +  A+L+  V+   +  +    K         ++ GGL  +++ 
Sbjct: 187 FS-MVEFDYETLERRLRELAFLNSGVRIKLADRRHADVKEQE-----LHYDGGLVEFVKY 240

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             +++  +  E    ++EK G    TVE A+ W +    ++  + N I   +GGTH +G 
Sbjct: 241 IDQSKKSLLEESIYIRSEKDG---MTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGF 297

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR I  YA+ +    K  + +  DD       +LSV + +P+F+ QTK KLVS + 
Sbjct: 298 RGALTRQITGYADSSGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEV 357

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
           +  VE  + +    +L ++P     ++E VI+ +  R   RK R++ RK+ +    LPGK
Sbjct: 358 RPVVEGLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDITRKSNLSVTSLPGK 417

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +     +E+FIVEGDSAGGSAK  R+R NQA+LPLRGKILNV     +++ ++ Q
Sbjct: 418 LADCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQ 477

Query: 513 IMDLVQALGCRTRSQYRE----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +  L+ ALG             + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE
Sbjct: 478 VGTLITALGTSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIE 537

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS-Q 627
           + H+++  PPL+++T+G  S Y  +E   +  L E          ++     GEM A   
Sbjct: 538 RGHIYIAQPPLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELVT-----GEMRAGPD 592

Query: 628 LKETAMDANKRTLLRV 643
           L+    D   RTL ++
Sbjct: 593 LRSVVED--ARTLRQL 606



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 9/112 (8%)

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
            + PP+ R  +  K            +L+     G+  + + R+KGLGEM A QL ET +
Sbjct: 710 FMEPPVLR--RKDKVE---SLSGPVALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETTL 764

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D N R+LL+V++N       D     ++LMG + + R +FIQ+ A  + ++ 
Sbjct: 765 DPNVRSLLQVKVNDAT----DADSLFSRLMGDEVEPRREFIQDNALNVANLD 812


>gi|328541628|ref|YP_004301737.1| DNA gyrase subunit B [Polymorphum gilvum SL003B-26A1]
 gi|326411380|gb|ADZ68443.1| DNA gyrase subunit B [Polymorphum gilvum SL003B-26A1]
          Length = 817

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 237/581 (40%), Positives = 342/581 (58%), Gaps = 16/581 (2%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85
             +PD+   A  +   +Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA
Sbjct: 4   TSLPDNTPPAGAADPQDYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNA 63

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AG+A+ + V+L+ +G +TV DNGRGIP + H      S  E+I+T LHAGGKFD 
Sbjct: 64  IDEALAGHADRVTVTLNADGSVTVTDNGRGIPTDVHA-TEGVSAAEVIMTQLHAGGKFDQ 122

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS  L + + R       +F  G   +PL +      ++GT
Sbjct: 123 NSYKVSGGLHGVGVSVVNALSTWLELRIWRAGKEHFIRFRHGDAEAPLVEVGPSNGRKGT 182

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            +TF P P+ F     FD A L    +  A+L+  V+   +  + + EK         ++
Sbjct: 183 EVTFLPSPETFTRI-EFDFATLEHRLRELAFLNSGVRILLTDRRGVEEKAVE-----LFY 236

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILT 324
            GGL+ +++     +  +     T   E+ G    TVE A+ W +   E    + N I  
Sbjct: 237 EGGLEAFVRYLDRAKHPLVEAPITVGAERDGI---TVEAALWWNDSYHEQVLCFTNNIPQ 293

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTR +  YA+ +    K  +S+  DD       +LSV + +P+F+ Q
Sbjct: 294 RDGGTHLAGFRAALTRQVTGYADSSGLLKKEKVSLTGDDCREGLTCVLSVKVPDPKFSSQ 353

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TK KLVS + +  VEN +      +L +NP  A  ++  V+E +  R   RK RE   RK
Sbjct: 354 TKDKLVSSEVRPVVENVINQALAEWLEENPARARAVVSKVVEAASAREAARKARELTRRK 413

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            A+    LPGKLADC +      ELF+VEGDSAGGSAKQ R+R NQAVLPLRGKILNV  
Sbjct: 414 GALDIASLPGKLADCQERDPAKAELFLVEGDSAGGSAKQGRHRENQAVLPLRGKILNVER 473

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +K+ ++ +I  L+ ALG     +    + LRY K+IIMTDADVDGAHI +LLLTFF+
Sbjct: 474 ARFDKMLSSNEIGTLITALGTGIGKEEFNLDKLRYHKIIIMTDADVDGAHIRTLLLTFFF 533

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++M +LIE+ H+++  PPL+++ +G    Y  D+   +  L
Sbjct: 534 RQMPELIERGHIYIAQPPLYKVKRGQSEQYLKDQTALEDYL 574



 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 4/88 (4%)

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           Q +L      G+  I + R+KGLGEM   QL ET +D N R+LL+V++        D  D
Sbjct: 733 QALLATVFAFGRKGISLQRYKGLGEMNPEQLWETTLDPNVRSLLQVKV----KEADDADD 788

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
              KLMG + + R +FIQ+ A  + ++ 
Sbjct: 789 IFTKLMGDEVEPRREFIQDNALSVANLD 816


>gi|325265954|ref|ZP_08132640.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Kingella
           denitrificans ATCC 33394]
 gi|324982592|gb|EGC18218.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Kingella
           denitrificans ATCC 33394]
          Length = 800

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 230/572 (40%), Positives = 334/572 (58%), Gaps = 19/572 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95
            +     Y A SI++LEGLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   TEPTQQEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V ++ +  +T+ DNGRGIP   HPK   +S  E+I+T LHAGGKFDN++Y++SGGLH
Sbjct: 62  NITVCINADESITIEDNGRGIPTGIHPK-EGRSAAEVIMTILHAGGKFDNNSYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPK 214
           GVG+SVVNALSD L +T+ R+      +F RG  + PL+   +   +K GTR+ F     
Sbjct: 121 GVGVSVVNALSDWLKLTIWREGKEHFVEFKRGETVEPLKVVGECSPDKHGTRVQFLASED 180

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
            FG    +    L K  +  ++L+  VK      ++        + E F   GG+  ++ 
Sbjct: 181 TFGLV-QYKFETLAKRIRELSFLNNGVKIELFDKRD-------GKHENFAESGGVVGFVN 232

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               ++  +  ++F    EK G    TVE A+ W +     +  + N I   +GGTH + 
Sbjct: 233 YITGSKKPLHEKVFYTIGEKDG---MTVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTA 289

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           LR A+TR I +Y E  +   K  I    DD+      +LSV + +P+F+ QTK KLVS +
Sbjct: 290 LRAAMTRTINQYIEANEIAKKAKIDTSGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSE 349

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLP 450
               V   L      +L +NP +A  +   ++E +  R   RK RE+ R+   +  L LP
Sbjct: 350 IAPVVNEVLSQALHDFLEENPQDAKIICGKIVEAARAREAARKARELTRRKGVMDGLGLP 409

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  E++  +
Sbjct: 410 GKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFERMLAS 469

Query: 511 QQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           Q++  L+ ALG     +    E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+
Sbjct: 470 QEVATLITALGTSIGKEEFNLEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVER 529

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
            ++++  PPL++   G +  Y  DE+ K + L
Sbjct: 530 GYIYIAQPPLYKAKAGKQERYLKDEQEKDEFL 561



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 4/90 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   +  +  + I R+KGLGEM   QL ET MD   R LL+V I   +       
Sbjct: 715 FEEALDSLLQSAQKGMTIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAI----AAD 770

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVGT 686
           ++   LMG + + R  FI+  A    ++  
Sbjct: 771 ETFVTLMGDEVEPRRAFIETNALVAQNIDA 800


>gi|6116692|dbj|BAA85765.1| DNA gyrase subunit B [Pseudomonas aeruginosa]
          Length = 807

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 228/570 (40%), Positives = 346/570 (60%), Gaps = 19/570 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S ++ YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGY + I
Sbjct: 2   SENNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCSEI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            +++  +  +TV DNGRGIPV+ H K    S  E+I+T LHAGGKFD++TY++SGGLHGV
Sbjct: 62  SITIHTDESITVRDNGRGIPVDIH-KEEGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS EL +T+ R N ++ Q +  G    P  +  +  +  GT + F+P P+ F 
Sbjct: 121 GVSVVNALSHELRLTIRRHNKVWEQVYHHGGSAVPTARSGRRTDGSGTEVHFKPSPETFS 180

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++         ++E F + GGLK +++   
Sbjct: 181 NIH-FSWDILAKRIRELSFLNSGVGILLRDER-------TGKEELFKYEGGLKAFVEYLN 232

Query: 278 ENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            N++ ++       + E+ G     VE A+ W +     +  + N I   +GGTH +G R
Sbjct: 233 TNKTAVNEVFHFNVQREEDGV---GVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFR 289

Query: 336 VALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR +  Y E     +        DD       I+SV + +P+F+ QTK KLVS + +
Sbjct: 290 SALTRNLNNYIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVK 349

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGK 452
             VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPGK
Sbjct: 350 TAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGK 409

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +     +EL+IVEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q+
Sbjct: 410 LADCQEKDPALSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMLSSQE 469

Query: 513 IMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF+++M +LIE+ +
Sbjct: 470 VGTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGY 529

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +++  PPL+++ +G +  Y  D++  ++ +
Sbjct: 530 IYIAQPPLYKVKRGKQEQYIKDDQAMEEYM 559



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 11/106 (10%)

Query: 582 ITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           + +G   + + A  +      L+     G  +  I R+KGLGEM   QL ET MD N R 
Sbjct: 710 VQKGERKRPISAFKDG-----LDWLMAEGTKRHSIQRYKGLGEMNPEQLWETTMDPNVRR 764

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +L+V I   +          N LMG   + R  FI+  A  + ++ 
Sbjct: 765 MLKVTIEDAI----AADQIFNTLMGDAVEPRRDFIESNALAVSNLD 806


>gi|325135020|gb|EGC57648.1| DNA gyrase, B subunit [Neisseria meningitidis M13399]
          Length = 796

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 229/601 (38%), Positives = 341/601 (56%), Gaps = 24/601 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95
            +   + Y A SI++LEGLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V DNGRG+P   HPK   +S  E+I+T LHAGGKFDN++Y+ISGGLH
Sbjct: 62  KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD + +T+ R       +F RG    PL       +K+GT + F    + 
Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLNVVGD-SDKKGTTVRFLASTET 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           FG+   +    L K  +  ++L+  V    + +++        + E F   GG+  ++Q 
Sbjct: 180 FGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
               ++ +  +IF    EK G    +VE A+ W +     +  + N I   +GGTH + L
Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R  +TR I  Y E  +   K  +    DD+      +LSV + +P+F+ QTK KLVS + 
Sbjct: 289 RQVMTRTINSYIETNEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEI 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
              V   +      +L +NP EA  +   +++ +  R   RK RE+ R+   +  L LPG
Sbjct: 349 GPVVNEVISQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSA Q R+R  QA+LPL+GKILNV  A  EK+  +Q
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALG    + ++  E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ 
Sbjct: 469 EVAALITALGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPL++   G +  Y  DE  K + L          +   R      +  S+L +
Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVSDGR-----TIEGSELAD 583

Query: 631 T 631
           T
Sbjct: 584 T 584



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%)

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           ++ +G      +D +  +  L+      +  + I R+KGLGEM   QL ET MD   R L
Sbjct: 698 KLYKGDNE---YDIDSFEGALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRL 754

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           L+V I   +       +    LMG + + R  FI+  A    ++  
Sbjct: 755 LKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796


>gi|304389025|ref|ZP_07371071.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Neisseria
           meningitidis ATCC 13091]
 gi|304337006|gb|EFM03194.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Neisseria
           meningitidis ATCC 13091]
          Length = 796

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 229/601 (38%), Positives = 338/601 (56%), Gaps = 24/601 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95
            +   + Y A SI++LEGLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V DNGRG+P   HPK   +S  E+I+T LHAGGKFDN++Y+ISGGLH
Sbjct: 62  KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD + +T+ R       +F RG    PL       +K+GT + F    + 
Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLNVVGD-SDKKGTTVRFLASTET 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           FG+   +    L K  +  ++L+  V    + +++        + E F   GG+  ++Q 
Sbjct: 180 FGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
               ++ +  +IF    EK G    +VE A+ W +     +  + N I   +GGTH + L
Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R  +TR I  Y E  +   K  +    DD+      +LSV + +P+F+ QTK KLVS + 
Sbjct: 289 RQVMTRTINSYIETNEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEI 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
              V   +      +L +NP EA  +   +++ +  R   RK RE+ R+   +  L LPG
Sbjct: 349 GPVVNEVISQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSA Q R+R  QA+LPL+GKILNV  A  EK+  +Q
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468

Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALG     +    E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ 
Sbjct: 469 EVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPL++   G +  Y  DE  K + L          +  SR      +   +L  
Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVSDSR-----TIEGEELAN 583

Query: 631 T 631
           T
Sbjct: 584 T 584



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 10/108 (9%)

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L++   G      +D +  +  L+      +  + I R+KGLGEM   QL ET MD   R
Sbjct: 699 LYKGENG------YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVR 752

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
            LL+V I   +       +    LMG + + R  FI+  A    ++  
Sbjct: 753 RLLKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796


>gi|148560385|ref|YP_001258162.1| DNA gyrase subunit B [Brucella ovis ATCC 25840]
 gi|148371642|gb|ABQ61621.1| DNA gyrase, B subunit [Brucella ovis ATCC 25840]
          Length = 810

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 242/616 (39%), Positives = 354/616 (57%), Gaps = 26/616 (4%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           N  A   Y A SIR+L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+A 
Sbjct: 5   NSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAT 64

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
           L+ V+L+ +G  TV DNGRGIP + H K    S  E+I+T LHAGGKFD ++Y++SGGLH
Sbjct: 65  LVTVTLNADGSCTVTDNGRGIPTDIH-KEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 123

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS  L + + R   I    F+ G+  +PL       ++ GT ++F P P  
Sbjct: 124 GVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSFLPSPDT 183

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     FD   L +  +  A+L+  V+   +  +    K         ++ GGL  +++ 
Sbjct: 184 FS-MVEFDYETLERRLRELAFLNSGVRIKLADCRHADVKEQE-----LHYDGGLVEFVKY 237

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             +++  +  E    ++EK G    TVE A+ W +    ++  + N I   +GGTH +G 
Sbjct: 238 IDQSKKSLLEEPIYIRSEKDG---MTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGF 294

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR I  YA+ +    K  + +  DD       ILSV + +P+F+ QTK KLVS + 
Sbjct: 295 RGALTRQITGYADSSGMTKKEKVQLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEV 354

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
           +  VE  + +    +L ++P     ++E VI+ +  R   RK R++ RK+ +    LPGK
Sbjct: 355 RPVVEGLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDITRKSNLSVTSLPGK 414

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +     +E+FIVEGDSAGGSAK  R+R NQA+LPLRGKILNV     +++ ++ Q
Sbjct: 415 LADCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQ 474

Query: 513 IMDLVQALGCRTRSQYRE----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +  L+ ALG             + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE
Sbjct: 475 VGTLITALGTSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIE 534

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS-Q 627
           + H+++  PPL+++T+G  S Y  +E   +  L E          ++     GEM A   
Sbjct: 535 RGHIYIAQPPLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELVT-----GEMRAGPD 589

Query: 628 LKETAMDANKRTLLRV 643
           L+    D   RTL ++
Sbjct: 590 LRSVVED--ARTLRQL 603



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 9/112 (8%)

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
            + PP+ R  +  K            +L+     G+  + + R+KGLGEM A QL ET +
Sbjct: 707 FMEPPVLR--RKDKVE---SLSGPVALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETTL 761

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D N R+LL+V++N       D     ++LMG + + R +FIQ+ A  + ++ 
Sbjct: 762 DPNVRSLLQVKVNDAT----DADSLFSRLMGDEVEPRREFIQDNALNVANLD 809


>gi|260771248|ref|ZP_05880175.1| topoisomerase IV subunit B [Vibrio furnissii CIP 102972]
 gi|260613845|gb|EEX39037.1| topoisomerase IV subunit B [Vibrio furnissii CIP 102972]
          Length = 602

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 242/622 (38%), Positives = 341/622 (54%), Gaps = 24/622 (3%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MY   TD    +HL  EVIDN++DE +AGYA  ++V L  +  L V+D+GRG+PV+ HP+
Sbjct: 1   MY---TDTTRPNHLGQEVIDNSVDEALAGYATKVQVILHADQSLEVIDDGRGMPVDIHPE 57

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
               S +E+IL  LHAGGKF N  Y+ SGGLHGVGISVVNALS  + VTV R   ++   
Sbjct: 58  -EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVTVRRDGQVYDIA 116

Query: 184 FSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
           F  G  +S L       R  RGT + F P+ K F     F   RL+   ++KA L   ++
Sbjct: 117 FEHGDKVSDLTVTGTCGRRNRGTSVHFWPETKYFDSPN-FSVTRLINNLRAKAVLCPGLE 175

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
             +S      E         +++  GLK YL   ++  +L+  E FTG+   +     T 
Sbjct: 176 ITFSDKVNNNE-------YRWFYEDGLKDYLAEGVKGYTLLPEEPFTGEFSAETEA-ATW 227

Query: 303 EWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDD 361
                         SY N I T +GGTH +GLR  L   ++++ E      R + +  +D
Sbjct: 228 AVIWLPEGGEMITESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNLLPRGVKLTGED 287

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
           +      +LSV +++P+FAGQTK +L S      V   ++D F  +L + P  A +L E 
Sbjct: 288 VFDRCAYVLSVKMQDPQFAGQTKERLSSRQTAAFVSGVVKDAFSLWLNEKPQLAEQLAEV 347

Query: 422 VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
            I  +  R+R    ++V RK       LPGKL DCSQ     TELF+VEGDSAGGSAKQA
Sbjct: 348 CIANAHRRMR--AAKKVVRKKVASGPALPGKLTDCSQQDLSRTELFLVEGDSAGGSAKQA 405

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541
           R+R  QA++PLRGKILN      +++  +Q++ D+  ALG    S   E  LRY KV I+
Sbjct: 406 RDREFQAIMPLRGKILNTWEVSGDQVLGSQEVHDISVALGIDPDSDNLET-LRYGKVCIL 464

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
            DAD DG HIA+LL   F +    L+ + H+++  PPL+RI  G +  YA D+  K  IL
Sbjct: 465 ADADSDGLHIATLLCALFTRHFSALVREGHIYVAMPPLYRIDCGKEVFYALDDNEKDAIL 524

Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
           E   K  K K+ + RFKGLGEM   QL+ET MD N R L+++ I+      K T++ ++ 
Sbjct: 525 ERLAKK-KAKVNVQRFKGLGEMNPIQLRETTMDPNTRRLVQLTIDD----AKATEEMMDM 579

Query: 662 LMGTK-ADERFKFIQERASFID 682
           L+G K AD+R  ++Q      +
Sbjct: 580 LLGKKRADDRRNWLQSNGDLAE 601


>gi|261854634|ref|YP_003261917.1| DNA gyrase subunit beta [Halothiobacillus neapolitanus c2]
 gi|261835103|gb|ACX94870.1| DNA gyrase, B subunit [Halothiobacillus neapolitanus c2]
          Length = 817

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 227/588 (38%), Positives = 347/588 (59%), Gaps = 19/588 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85
            +   + A  N   S  YD++SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA
Sbjct: 2   SDNTPNDASQNAGQSSGYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNA 61

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AG+ + + V++  +G ++V DNGRGIPV+ H +    S  E+I+T LHAGGKFD 
Sbjct: 62  VDEALAGHCDTVTVTMHADGSVSVSDNGRGIPVDIHAE-EGVSAAEVIMTVLHAGGKFDQ 120

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALSDEL + + R    + Q +  G+P +PL +        GT
Sbjct: 121 NSYKVSGGLHGVGVSVVNALSDELELDIYRGGHAYHQSYRLGVPQAPLAEVGATEK-SGT 179

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            I F P P IF D   F    L K  +  ++L+  ++   + +            + FY+
Sbjct: 180 SIRFLPSPTIFTDVV-FHYDILAKRLRELSFLNSGIRVFLNDEIS-------GRADTFYY 231

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILT 324
            GG++ +++   + +++I   + +   +K       VE A+ W +   E    Y N I  
Sbjct: 232 EGGIRAFVEHLNKGKTVIHKNVLSFSGQKDSVL---VELALQWNDSYQENLFCYTNNIPQ 288

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTR +  Y E      K  +S   +D     V ++SV + +P+F+ Q
Sbjct: 289 RDGGTHLTGFRTALTRTLNDYMERAGILKKAKVSTSGEDWREGLVAVISVKVPDPKFSSQ 348

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRK 441
           TK KLVS + +  VE+   +    +L +NP EA  +   +IE +  R   R+ R    RK
Sbjct: 349 TKEKLVSSEVKSAVESLTSERLAEFLEENPQEALLITNKIIEAARAREAARRAREMTRRK 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            A+    LPGKLADC +     +E+++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  
Sbjct: 409 GALDIAGLPGKLADCQEKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEK 468

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +K+ ++ ++  L+ ALGC   R  +  + LRY ++IIMTDADVDG+HI +LLLTFFY
Sbjct: 469 ARFDKMLSSAEVGTLITALGCGIGREDFNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFY 528

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++M +L+E+ H+++  PPL+++ +G +  Y  D+    + L +    G
Sbjct: 529 RQMKELVERGHIYIAQPPLYKVKKGKQEQYLKDDLALNQYLLQLAVDG 576



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 7/105 (6%)

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           R+ +G KS       H ++ ++   + G+  + I R+KGLGEM   QL ET M+   R L
Sbjct: 719 RVLRGEKSA---PITHFEQAIDWLMQEGRRGLGIQRYKGLGEMNPDQLWETTMNPETRRL 775

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           L+V I   + S     +    LMG   + R  FI++ A    ++ 
Sbjct: 776 LQVRIEDAIAS----DEIFTILMGDLVEPRRDFIEKFALSAVNID 816


>gi|319411305|emb|CBY91715.1| DNA gyrase subunit B [Neisseria meningitidis WUE 2594]
          Length = 796

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 229/601 (38%), Positives = 339/601 (56%), Gaps = 24/601 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95
            +   + Y A SI++LEGLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V DNGRG+P   HPK   +S  E+I+T LHAGGKFDN++Y+ISGGLH
Sbjct: 62  KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD + +T+ R       +F RG    PL       +K+GT + F    + 
Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLNVVGD-SDKKGTTVRFLASTET 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           FG+   +    L K  +  ++L+  V    + +++        + E F   GG+  ++Q 
Sbjct: 180 FGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
               ++ +  +IF    EK G    +VE A+ W +     +  + N I   +GGTH + L
Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R  +TR I  Y E  +   K  +    DD+      +LSV + +P+F+ QTK KLVS + 
Sbjct: 289 RQVMTRTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEI 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
              V   +      +L +NP EA  +   +++ +  R   RK RE+ R+   +  L LPG
Sbjct: 349 GPVVNEVISQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSA Q R+R  QA+LPL+GKILNV  A  EK+  +Q
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468

Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALG     +    E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ 
Sbjct: 469 EVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPL++   G +  Y  DE  K + L          I   R      +  ++L +
Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIISDGR-----TIEGAELAD 583

Query: 631 T 631
           T
Sbjct: 584 T 584



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 10/108 (9%)

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L++   G      +D +  +  L+      +  + I R+KGLGEM   QL ET MD   R
Sbjct: 699 LYKGENG------YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVR 752

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
            LL+V I   +       +    LMG + + R  FI+  A    ++  
Sbjct: 753 RLLKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796


>gi|17545695|ref|NP_519097.1| DNA topoisomerase IV subunit B [Ralstonia solanacearum GMI1000]
 gi|17427989|emb|CAD14678.1| probable dna topoisomerase iv (subunit b) protein [Ralstonia
           solanacearum GMI1000]
          Length = 661

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 248/673 (36%), Positives = 356/673 (52%), Gaps = 45/673 (6%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           S +  Y  +SI++L+GLEPV+ RPGMY   T      H+  EVIDNA DE + GY   I+
Sbjct: 2   SKTPQYSEASIKVLKGLEPVKQRPGMY---TRTDNPLHIVQEVIDNAADEALGGYGKWIQ 58

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLH 155
           V+L  +G ++V D  RGIPV  HP+      +EI+ T LHAGGKFD      Y  SGGLH
Sbjct: 59  VTLHKDGSVSVEDEARGIPVGIHPE-EGVPVVEIVFTRLHAGGKFDKGRGGAYAFSGGLH 117

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS--PLEKKEKVRNKRGTRITFRPDP 213
           GVG+SV NALS  L V V R  ++ +  FS G  +      + E+   K GTR+   PD 
Sbjct: 118 GVGVSVTNALSTRLEVAVWRDGSVSTLAFSGGDVIEALATRRAERGEKKNGTRVRVWPDG 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F  +     A L ++ +SKA L   VK   + +K         E  E+ +  GL+ YL
Sbjct: 178 KYFDSEN-IPQAELQRLLRSKAVLLPGVKVSLTIEKS-------GETLEWQYDQGLRGYL 229

Query: 274 QTKLENRSLISSEIFTGK----------TEKKGTHRGTVEWAIAWCEENPE-ITSYCNTI 322
              L   S     I   +           E+         W +AW +E      SY N I
Sbjct: 230 IESLAQGSGADPVIPLFEGEHFADPDRPGEEGFAFGEGASWVVAWTDEGSPVRESYVNLI 289

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAG 381
            T  GGTHESGLR  L + +K + E+     + + ++ +D+   A  +LS  + +P+F G
Sbjct: 290 PTPAGGTHESGLREGLFQAVKSFVEMHALCPKGVKLMPEDVFARASFVLSAKVLDPQFQG 349

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           Q K +L S DA R V    R   + +L Q+     KL E VI +++ R R  ++ E  + 
Sbjct: 350 QIKERLNSRDAVRLVSTFSRPALELWLNQHVEFGKKLAELVIRQAQARTRAAQKVEKKKG 409

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +  L  PGKL DC  +     ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN   
Sbjct: 410 SGVAVL--PGKLTDCESDDVSRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTWE 467

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTF 558
              +++  N ++ D+  A+G          D   LRY K+ I++DADVDGAHI  LLLT 
Sbjct: 468 TERDRLFANNEVHDIAVAIGVDPHGPADSVDLSGLRYGKICILSDADVDGAHIQVLLLTL 527

Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KG 610
           F++    LI + ++ +  PPL+R+    +G K    +YA D+   + I ++ +K G  +G
Sbjct: 528 FFKHFPQLIGRGNVCVARPPLYRVDAPARGKKPAQKLYALDDGELEAIEDKLRKEGLKEG 587

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669
             +ISRFKGLGEM A QL ET M+ + R LL V I +     + T   +N LMG  +A  
Sbjct: 588 SWQISRFKGLGEMSAEQLWETTMNPDTRRLLPVSIGEPG--AEQTVHVMNMLMGKGEAGA 645

Query: 670 RFKFIQERASFID 682
           R  +++ R + ++
Sbjct: 646 RRTWLEARGNEVE 658


>gi|121634083|ref|YP_974328.1| DNA gyrase subunit B [Neisseria meningitidis FAM18]
 gi|120865789|emb|CAM09520.1| DNA gyrase subunit B [Neisseria meningitidis FAM18]
 gi|325133030|gb|EGC55703.1| DNA gyrase, B subunit [Neisseria meningitidis M6190]
 gi|325139102|gb|EGC61648.1| DNA gyrase, B subunit [Neisseria meningitidis ES14902]
          Length = 796

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 229/601 (38%), Positives = 338/601 (56%), Gaps = 24/601 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95
            +   + Y A SI++LEGLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V DNGRG+P   HPK   +S  E+I+T LHAGGKFDN++Y+ISGGLH
Sbjct: 62  KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD + +T+ R       +F RG    PL       +K+GT + F    + 
Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLNVVGD-SDKKGTTVRFLASTET 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           FG+   +    L K  +  ++L+  V    + +++        + E F   GG+  ++Q 
Sbjct: 180 FGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
               ++ +  +IF    EK G    +VE A+ W +     +  + N I   +GGTH + L
Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R  +TR I  Y E  +   K  +    DD+      +LSV + +P+F+ QTK KLVS + 
Sbjct: 289 RQVMTRTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEI 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
              V   +      +L +NP EA  +   +++ +  R   RK RE+ R+   +  L LPG
Sbjct: 349 GPVVNEVISQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSA Q R+R  QA+LPL+GKILNV  A  EK+  +Q
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468

Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALG     +    E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ 
Sbjct: 469 EVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPL++   G +  Y  DE  K + L          +  SR      +   +L  
Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVSDSR-----TIEGEELAN 583

Query: 631 T 631
           T
Sbjct: 584 T 584



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 10/108 (9%)

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L++   G      +D +  +  L+      +  + I R+KGLGEM   QL ET MD   R
Sbjct: 699 LYKGENG------YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVR 752

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
            LL+V I   +       +    LMG + + R  FI+  A    ++  
Sbjct: 753 RLLKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796


>gi|161830408|ref|YP_001595905.1| DNA gyrase, B subunit [Coxiella burnetii RSA 331]
 gi|161762275|gb|ABX77917.1| DNA gyrase, B subunit [Coxiella burnetii RSA 331]
          Length = 808

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 230/562 (40%), Positives = 347/562 (61%), Gaps = 19/562 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           + SA   YD+S+I++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ +
Sbjct: 2   SVSAPQKYDSSTIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGFCS 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +G ++V DNGRGIP + HP+   +S  E+I+T LHAGGKFD + Y++SGGLH
Sbjct: 62  HIWVTIHADGSVSVRDNGRGIPTDIHPE-EGRSAAEVIMTVLHAGGKFDKNAYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVGISVVNALS+EL++T+ +   +++Q +  G+P +PL    K  +K GT I F+P   I
Sbjct: 121 GVGISVVNALSEELYMTIRQNGNVYTQTYKMGVPQAPLAVTGK-SDKTGTEIRFKPSNAI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   F    L K  +  A+L+  V+   + ++           + F + GG+K +++ 
Sbjct: 180 FSNT-EFHYDILAKRLRELAFLNLGVRIELTDERS-------GRGDIFEYEGGIKAFVEH 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             + ++ I S++F   TEK       VE A+ W +     I  + N I  ++GGTH +G 
Sbjct: 232 LNKKKTPIHSDVFHFSTEKNDI---VVEVAMQWNDGFQETIFCFTNNIPQNDGGTHLAGF 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y E      K  ++I  DD       +LSV + +P+F+ QTK KLVS + 
Sbjct: 289 RAALTRTLNNYIEGEALAKKSKVTISGDDTREGLTVVLSVKVPDPKFSSQTKDKLVSSEV 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPG 451
           +  VE+ +      YL++NP +A  +   VI+ +  R   RK      RK  +    LPG
Sbjct: 349 KPVVESTVAKQLHDYLLENPKQARIIAMKVIDAARAREAARKARDMTRRKNVLDLGGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +      ELF+VEGDSAGGSAKQAR+R  QA+LPL+GKILNV  A  +K+ ++ 
Sbjct: 409 KLADCQEKDPALCELFLVEGDSAGGSAKQARDRRYQAILPLKGKILNVEKARFDKMLSSA 468

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALGC   + +Y  + LRY ++I+MTDADVDG+HI +LLLTFFY++M +LIE+ 
Sbjct: 469 EVGTLITALGCGIGKEEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAH 592
           H+++  PPL+++ +  +  Y  
Sbjct: 529 HIYIAQPPLYKVKKSKQEQYVK 550



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 8/106 (7%)

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           + +    +        H  + LE F + GK  + I R+KGLGEM   QL ET MD   R 
Sbjct: 710 YIVRNDKRR----TVTHFGEALEWFIEEGKKGLNIQRYKGLGEMNPDQLWETTMDRESRR 765

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           LL V I   +       +    LMG + + R  FI++ A  ++++ 
Sbjct: 766 LLSVSIEDAVM----ADEIFTTLMGDQVEPRRLFIEQNALAVENLD 807


>gi|82701138|ref|YP_410704.1| DNA gyrase subunit B [Nitrosospira multiformis ATCC 25196]
 gi|82409203|gb|ABB73312.1| DNA gyrase subunit B [Nitrosospira multiformis ATCC 25196]
          Length = 810

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 231/573 (40%), Positives = 342/573 (59%), Gaps = 19/573 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94
               +S +Y + SI+IL+GL+ VR RPGMYIG T D   LHH+  EV+DNA+DE +AGY 
Sbjct: 10  QKSKSSADYGSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVLDNAIDEALAGYC 69

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFP-NKSTLEIILTTLHAGGKFDNSTYEISGG 153
           + I V +  +  +TV DNGRGIP          +S  EI++T LHAGGKFD+ +Y++SGG
Sbjct: 70  DEISVIIHPDNSVTVQDNGRGIPTGIKQDDELKRSAAEIVMTELHAGGKFDSDSYKVSGG 129

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS+ L +++ R   I   +F  G+P+ PL    K   +RGT + F    
Sbjct: 130 LHGVGVSVVNALSEWLRLSIRRDGKIHQIEFRMGVPVGPLATTGKT-ERRGTEVHFLASK 188

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IFGD   +      K  +  ++L+  VK      +   E       E F F GG+K+++
Sbjct: 189 EIFGDI-EYHYDIFAKRLRELSFLNNGVKIHLIDQRNAKE-------ETFAFVGGVKSFV 240

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +     +S++   IF    EK    R  VE ++ W +    ++  + N I   +GGTH +
Sbjct: 241 EYVNRTKSVLHPNIFYAAGEKD---RIAVEVSMQWNDSYTEQVLCFTNNIPQKDGGTHLT 297

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           GLR A+TR +  Y E +    K  I    DD+      +LSV + EP+F+ QTK KLVS 
Sbjct: 298 GLRAAMTRTLNNYIEKSDLAKKAKIETSGDDMREGLSCVLSVKLFEPKFSSQTKEKLVSS 357

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRL 449
           + +  VE  +      +L+++P++A  +   +IE +  R   RK RE+ R+   +  + L
Sbjct: 358 EVRPVVEEIVSLKLAEFLMEHPVDAKIICGKIIEAARAREAARKARELTRRKGVLDGMGL 417

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +EL++VEGDSAGGSAKQ R+R  QA++PL+GKILNV  A  +K+ +
Sbjct: 418 PGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKARFDKLIS 477

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q+I  L+ ALG    + +Y  + LRY ++IIMTDADVDG+HI +LLLTFFY++M +LIE
Sbjct: 478 SQEIASLITALGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIE 537

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           + H+F+  PPL++I  G +  Y  D+   ++ L
Sbjct: 538 RGHIFIAQPPLYKIKHGKQERYVKDDHELKQYL 570



 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             ++ L+   +  K  I   R+KGLGEM  +QL ET MD   R LLR +I   +      
Sbjct: 724 DFKQALDWLLEEVKKGIGTQRYKGLGEMNPAQLWETTMDPKVRLLLRAQIEDSI----AA 779

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
            +    LMG   + R  FI+  A  + ++ 
Sbjct: 780 DEIFTTLMGDIVEPRRAFIENNALGVRNLD 809


>gi|238028239|ref|YP_002912470.1| DNA topoisomerase IV subunit B [Burkholderia glumae BGR1]
 gi|237877433|gb|ACR29766.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia glumae BGR1]
          Length = 660

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 236/673 (35%), Positives = 354/673 (52%), Gaps = 41/673 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +  +  Y  +SI++L+GLEPV+ RPGMY   T  +   H+  EVIDNA DE + G+ 
Sbjct: 1   MSTKKPAAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGHG 57

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151
             I V+L  +  ++V D+GRGIP   HP       +EI+ T LHAGGKFD      Y  S
Sbjct: 58  KQITVTLHADQSVSVEDDGRGIPFGLHP-DEGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--LEKKEKVRNKRGTRITF 209
           GGLHGVG+SV NAL+  L VTV R+       F+ G  + P   +   +   K GTR+  
Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWREGKCAELGFAHGDVVKPLVTQPAGRGEKKSGTRVRV 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD K F          L ++ +SKA L   V+     +K         E++ + +  GL
Sbjct: 177 WPDGKYFDSPN-LPLGELQRLLRSKAVLLPGVEVVLVIEKS-------GERQSWKYEDGL 228

Query: 270 KTYLQTKLENRSLISSEI------FTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTI 322
           + YL  ++    L+           +   +          W +AW EE      SY N I
Sbjct: 229 RGYLLDEMNGSELLIPLFEGERFADSKSGDDSFADGEGASWVVAWSEEGSLTRESYVNLI 288

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAG 381
            T  GGTHESGLR  L + +K + EL     + + ++++D+      +LS  + +P+F G
Sbjct: 289 PTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQG 348

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           Q K +L S DA + V +  R   + +L Q+     KL E VI++++ R R  ++ E  + 
Sbjct: 349 QIKERLNSRDAVKLVSSFTRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKVEKRKS 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +  L  PGKL DC        ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN   
Sbjct: 409 SGVAVL--PGKLTDCETQDITRNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWE 466

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLLTF 558
              +++  N ++ D+  A+G             +LRY K+ I++DADVDGAHI  LLLT 
Sbjct: 467 TERDRLFANNEVHDISVAIGVDPHGPDDNVDLSNLRYGKICILSDADVDGAHIQVLLLTL 526

Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KG 610
           F++    LIE+ ++F+  PPLFR+    +G K    +YA D+   + IL++ +K G    
Sbjct: 527 FFKHFPQLIERGNVFVARPPLFRVDAPARGKKPAQKLYALDDGELEAILDKLRKDGVRDT 586

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669
           +  ISRFKGLGEM A QL +T M+ + R L+ V + +       T   +  LMG  +A  
Sbjct: 587 QWTISRFKGLGEMSAEQLWDTTMNPDTRRLMPVALGQLDYDA--TVSRMTMLMGKGEAAA 644

Query: 670 RFKFIQERASFID 682
           R  +++E+ + ++
Sbjct: 645 RRSWLEEKGNEVE 657


>gi|189218174|ref|YP_001938816.1| DNA gyrase subunit B [Methylacidiphilum infernorum V4]
 gi|189185032|gb|ACD82217.1| DNA gyrase subunit B [Methylacidiphilum infernorum V4]
          Length = 841

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 232/574 (40%), Positives = 331/574 (57%), Gaps = 15/574 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +YDAS I  LEGLE VR RPGMYIG TDE+ LHH   EV+DN++DE +AGY + IE+++ 
Sbjct: 16  SYDASRIEKLEGLEAVRKRPGMYIGPTDERGLHHCIFEVLDNSIDEHLAGYCSRIELTIH 75

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G ++++DNGRGIPV+ HPKF     +E++LT LHAGGKF    Y+ SGGLHGVG   V
Sbjct: 76  VDGSVSILDNGRGIPVDPHPKF-KIPAVELVLTNLHAGGKFSQGVYKYSGGLHGVGAKCV 134

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+   V V R   ++  +F RG    PLE   K     GT ITF+PDP+IF     F
Sbjct: 135 NALSEWFKVEVFRDGKVYRMEFRRGKTSKPLEVVGKTLK-TGTLITFKPDPEIFTQTLEF 193

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               + K  +  A+L+  ++     ++++      P    F+F  G+  ++    ++   
Sbjct: 194 KTEIIAKRLRELAFLNPGLEILLLDERQLD--GSKPSSLRFFFKEGIAEFVSQFTQDLKP 251

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +       + +K       V+  + + E    +I  Y N I   +GG+H SGLR ALTR 
Sbjct: 252 LCPRPIVIQKQKDD---LIVDCVLQYTEGYTEQIFCYTNGIPNPDGGSHLSGLRTALTRS 308

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I +Y +      ++   +  +D+    V ILS+    P F  QTK KLVS + +  V + 
Sbjct: 309 INQYGKANNLFKEKDPPLSGEDVREGLVCILSLKHPSPSFESQTKVKLVSPEVEGVVSSL 368

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
           + +   +YL  NP  A +++E  +  +  R   +K RE  RKTA+    LPGKLADCS  
Sbjct: 369 VYEGLMNYLELNPQVAKRIVEKALTAARAREAAKKAREAVRKTALSGGGLPGKLADCSVR 428

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
                ELFIVEGDSAGGSAKQ RNR  QA+LP+RGK++NV  A  +K+ NN++I  ++ A
Sbjct: 429 NPQEAELFIVEGDSAGGSAKQGRNRQFQAILPIRGKLINVEKARLDKVLNNEEIQTIITA 488

Query: 520 LGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           +G        E     E LRY K+I+MTDADVDG+HI +LLLTFFY++M +LI + H+++
Sbjct: 489 VGTGIGDGDGEGSFLLERLRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELINKGHVYI 548

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+ I +  +  Y  ++E   KIL E     
Sbjct: 549 AQPPLYLIGKKKEEYYVQNDEELNKILLEQGVKN 582



 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 6/110 (5%)

Query: 578 PLFR--ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
           PL++  + +G K     D     +ILE  K++GK  +EI RFKGLGEM   QL ET MD 
Sbjct: 735 PLYKMIVKKGEKGEKQLDIFSIGQILEVVKENGKEGVEIKRFKGLGEMNPKQLYETTMDP 794

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            KR LL+VEI   +    + +     LMG + + R +FI+E A  + ++ 
Sbjct: 795 QKRKLLKVEIADAI----EAERVFVTLMGEEVEPRKRFIEENALHVRNLD 840


>gi|73542044|ref|YP_296564.1| DNA topoisomerase IV subunit B [Ralstonia eutropha JMP134]
 gi|72119457|gb|AAZ61720.1| DNA topoisomerase IV subunit B [Ralstonia eutropha JMP134]
          Length = 663

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 245/668 (36%), Positives = 349/668 (52%), Gaps = 34/668 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           S +  Y  SSIR+L+GLEPV+ RPGMY   T      H+  EVIDNA DE + G+ + I 
Sbjct: 3   SKTSQYSESSIRVLKGLEPVKQRPGMY---TRTDNPLHIVQEVIDNASDEALGGFGSEIL 59

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA---GGKFDNSTYEISGGLH 155
           V+L  +G ++V D+GRGIPV  HP+      +EI+ T LHA     K     Y  SGGLH
Sbjct: 60  VTLHRDGSVSVEDDGRGIPVGIHPE-EGVPVVEIVFTRLHAGGKFDKGKGGAYAFSGGLH 118

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--LEKKEKVRNKRGTRITFRPDP 213
           GVG+SV NALS +L V+V R   + +  FS G   +P    K E+   K GTR+   PD 
Sbjct: 119 GVGVSVTNALSTQLDVSVWRDGMMSTLTFSGGDVTAPLTSRKLERGEKKNGTRVQVWPDA 178

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF------PG 267
           K F   A    A L ++ +SKA L   VK     +K    +    ++    +       G
Sbjct: 179 KYFDS-AAIPQAELQRLLRSKAVLLPGVKVTLVIEKSGETQTWQYDQGLKGYLVEALAQG 237

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEG 327
                +    E       +   G+         +   A    E  P   SY N I T  G
Sbjct: 238 SGAELVIPMFEGEHFADPDANPGEEGFADGEGASWVVAWT-EEGAPVRESYVNLIPTPAG 296

Query: 328 GTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           GTHESGLR  L + +K + E+     + + ++S+D+   A  +LS  + +P+F GQ K +
Sbjct: 297 GTHESGLREGLFQAVKSFIEMHALQPKGVKLMSEDVFARASFVLSAKVLDPQFQGQIKER 356

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L S DA R V    R   + +L  +     KL E VI +++ R R  ++ E  + + +  
Sbjct: 357 LNSRDAVRLVSTFSRPALELWLNHHVEYGKKLAELVIRQAQARTRAAQKVEKKKGSGVAV 416

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
           L  PGKL DC        ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN      ++
Sbjct: 417 L--PGKLTDCESTDVTRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTWETERDR 474

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +  N ++ D+  A+G        E D   LRY K+ I++DADVDGAHI  LLLT F++  
Sbjct: 475 LFANNEVHDIAVAIGVDPHGANDEPDLSNLRYGKICILSDADVDGAHIQVLLLTLFFRHF 534

Query: 564 YDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKIEIS 615
             LIE  ++ +  PPLFR+    +G K    +YA DE   + I ++  K G  +G  +IS
Sbjct: 535 PKLIEAGNVCVARPPLFRVDAPARGKKPAQKLYALDEGELEAIQDKLIKDGVKEGSWQIS 594

Query: 616 RFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFI 674
           RFKGLGEM A QL ET M+ + R LL V +      L  T + +N LMG  +A +R  ++
Sbjct: 595 RFKGLGEMSAEQLWETTMNPDTRRLLPVAL--GEYDLPQTVEMMNMLMGKGEAAQRRSWL 652

Query: 675 QERASFID 682
           +E+ + ++
Sbjct: 653 EEKGNEVE 660


>gi|308388431|gb|ADO30751.1| DNA gyrase subunit B [Neisseria meningitidis alpha710]
 gi|325130945|gb|EGC53672.1| DNA gyrase, B subunit [Neisseria meningitidis OX99.30304]
 gi|325137042|gb|EGC59638.1| DNA gyrase, B subunit [Neisseria meningitidis M0579]
          Length = 796

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 228/601 (37%), Positives = 339/601 (56%), Gaps = 24/601 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95
            +   + Y A SI++LEGLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V DNGRG+P   HPK   +S  E+I+T LHAGGKFDN++Y+ISGGLH
Sbjct: 62  KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD + +T+ R       +F RG    PL       +K+GT + F    + 
Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLNVVGD-SDKKGTTVRFLASTET 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           FG+   +    L K  +  ++L+  V    + +++        + E F   GG+  ++Q 
Sbjct: 180 FGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
               ++ +  +IF    EK G    +VE A+ W +     +  + N I   +GGTH + L
Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R  +TR I  Y E  +   K  +    DD+      +LSV + +P+F+ QTK KLVS + 
Sbjct: 289 RQVMTRTINSYIETNEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEI 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
              V   +      +L +NP EA  +   +++ +  R   RK RE+ R+   +  L LPG
Sbjct: 349 GPVVNEVISQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSA Q R+R  QA+LPL+GKILNV  A  EK+  +Q
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468

Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALG     +    E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ 
Sbjct: 469 EVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPL++   G +  Y  DE  K + L          +   R      +  ++L +
Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVSDGR-----TIEGAELAD 583

Query: 631 T 631
           T
Sbjct: 584 T 584



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 10/108 (9%)

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L++   G      +D +  +  L+      +  + I R+KGLGEM   QL ET MD   R
Sbjct: 699 LYKGENG------YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVR 752

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
            LL+V I   +       +    LMG + + R  FI+  A    ++  
Sbjct: 753 RLLKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796


>gi|212211673|ref|YP_002302609.1| DNA gyrase subunit B [Coxiella burnetii CbuG_Q212]
 gi|212010083|gb|ACJ17464.1| DNA gyrase subunit B [Coxiella burnetii CbuG_Q212]
          Length = 810

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 230/562 (40%), Positives = 347/562 (61%), Gaps = 19/562 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           + SA   YD+S+I++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ +
Sbjct: 4   SVSAPQKYDSSTIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGFCS 63

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +G ++V DNGRGIP + HP+   +S  E+I+T LHAGGKFD + Y++SGGLH
Sbjct: 64  HIWVTIHADGSVSVRDNGRGIPTDIHPE-EGRSAAEVIMTVLHAGGKFDKNAYKVSGGLH 122

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVGISVVNALS+EL++T+ +   +++Q +  G+P +PL    K  +K GT I F+P   I
Sbjct: 123 GVGISVVNALSEELYMTIRQNGNVYTQTYKMGVPQAPLAVTGK-SDKTGTEIRFKPSNAI 181

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   F    L K  +  A+L+  V+   + ++           + F + GG+K +++ 
Sbjct: 182 FSNT-EFHYDILAKRLRELAFLNLGVRIELTDERS-------GRGDIFEYEGGIKAFVEH 233

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             + ++ I S++F   TEK       VE A+ W +     I  + N I  ++GGTH +G 
Sbjct: 234 LNKKKTPIHSDVFHFSTEKNDI---VVEVAMQWNDGFQETIFCFTNNIPQNDGGTHLAGF 290

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y E      K  ++I  DD       +LSV + +P+F+ QTK KLVS + 
Sbjct: 291 RAALTRTLNNYIEGEALAKKSKVTISGDDTREGLTVVLSVKVPDPKFSSQTKDKLVSSEV 350

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPG 451
           +  VE+ +      YL++NP +A  +   VI+ +  R   RK      RK  +    LPG
Sbjct: 351 KPVVESTVAKQLHDYLLENPKQARIIAMKVIDAARAREAARKARDMTRRKNVLDLGGLPG 410

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +      ELF+VEGDSAGGSAKQAR+R  QA+LPL+GKILNV  A  +K+ ++ 
Sbjct: 411 KLADCQEKDPALCELFLVEGDSAGGSAKQARDRRYQAILPLKGKILNVEKARFDKMLSSA 470

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALGC   + +Y  + LRY ++I+MTDADVDG+HI +LLLTFFY++M +LIE+ 
Sbjct: 471 EVGTLITALGCGIGKEEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERG 530

Query: 571 HLFLISPPLFRITQGTKSVYAH 592
           H+++  PPL+++ +  +  Y  
Sbjct: 531 HIYIAQPPLYKVKKSKQEQYVK 552



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 8/106 (7%)

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           + +    +        H  + LE F + GK  + I R+KGLGEM   QL ET MD   R 
Sbjct: 712 YIVRNDKRR----TVTHFGEALEWFIEEGKKGLNIQRYKGLGEMNPDQLWETTMDRESRR 767

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           LL V I   +       +    LMG + + R  FI++ A  ++++ 
Sbjct: 768 LLSVSIEDAVM----ADEIFTTLMGDQVEPRRLFIEQNALAVENLD 809


>gi|66043275|ref|YP_233116.1| DNA gyrase subunit B [Pseudomonas syringae pv. syringae B728a]
 gi|289677553|ref|ZP_06498443.1| DNA gyrase subunit B [Pseudomonas syringae pv. syringae FF5]
 gi|63253982|gb|AAY35078.1| DNA gyrase, B subunit [Pseudomonas syringae pv. syringae B728a]
 gi|330937293|gb|EGH41304.1| DNA gyrase subunit B [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 805

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 226/569 (39%), Positives = 343/569 (60%), Gaps = 19/569 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S +  YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I
Sbjct: 2   SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            + +  +  +TV DNGRGIPV+ H K    S  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  SIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+I F+P  + F 
Sbjct: 121 GVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDSTGTQIHFKPSAETFK 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++   
Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++           G     VE A+ W +     +  + N I   +GGTH  G R 
Sbjct: 232 TNKTPVNEVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 289 ALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPGKL
Sbjct: 349 AVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 468

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++
Sbjct: 469 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++  PPL+++ +G +  Y  D+E  ++ +
Sbjct: 529 YIAQPPLYKVKKGKQEQYIKDDEAMEEYM 557



 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 4/91 (4%)

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
              ++ L         +  I R+KGLGEM   QL ET MD + R +L+V I   +     
Sbjct: 718 NEFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIG---- 773

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
                N LMG   + R  FI+  A  + ++ 
Sbjct: 774 ADQIFNTLMGDAVEPRRDFIESNALAVSNLD 804


>gi|215918859|ref|NP_819060.2| DNA gyrase subunit B [Coxiella burnetii RSA 493]
 gi|206583743|gb|AAO89574.2| DNA gyrase subunit B [Coxiella burnetii RSA 493]
          Length = 810

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 230/562 (40%), Positives = 347/562 (61%), Gaps = 19/562 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           + SA   YD+S+I++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ +
Sbjct: 4   SVSAPQKYDSSTIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGFCS 63

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +G ++V DNGRGIP + HP+   +S  E+I+T LHAGGKFD + Y++SGGLH
Sbjct: 64  HIWVTIHADGSVSVRDNGRGIPTDIHPE-EGRSAAEVIMTVLHAGGKFDKNAYKVSGGLH 122

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVGISVVNALS+EL++T+ +   +++Q +  G+P +PL    K  +K GT I F+P   I
Sbjct: 123 GVGISVVNALSEELYMTIRQNGNVYTQTYKMGVPQAPLAVTGK-SDKTGTEIRFKPSNAI 181

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   F    L K  +  A+L+  V+   + ++           + F + GG+K +++ 
Sbjct: 182 FSNT-EFHYDILAKRLRELAFLNLGVRIELTDERS-------GRGDIFEYEGGIKAFVEH 233

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             + ++ I S++F   TEK       VE A+ W +     I  + N I  ++GGTH +G 
Sbjct: 234 LNKKKTPIHSDVFHFSTEKNDI---VVEVAMQWNDGFQETIFCFTNNIPQNDGGTHLAGF 290

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y E      K  ++I  DD       +LSV + +P+F+ QTK KLVS + 
Sbjct: 291 RAALTRTLNNYIEGEALAKKSKVTISGDDTREGLTVVLSVKVPDPKFSSQTKDKLVSSEV 350

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPG 451
           +  VE+ +      YL++NP +A  +   VI+ +  R   RK      RK  +    LPG
Sbjct: 351 KPVVESTVAKQLHDYLLENPKQARIIAMKVIDAARAREAARKARDMTRRKNVLDLGGLPG 410

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +      ELF+VEGDSAGGSAKQAR+R  QA+LPL+GKILNV  A  +K+ ++ 
Sbjct: 411 KLADCQEKDPALCELFLVEGDSAGGSAKQARDRRYQAILPLKGKILNVEKARFDKMLSSA 470

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALGC   + +Y  + LRY ++I+MTDADVDG+HI +LLLTFFY++M +LIE+ 
Sbjct: 471 EVGTLITALGCGIGKEEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERG 530

Query: 571 HLFLISPPLFRITQGTKSVYAH 592
           H+++  PPL+++ +  +  Y  
Sbjct: 531 HIYIAQPPLYKVKKSKQEQYVK 552



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 8/106 (7%)

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           + +    +        H  + LE F + GK  + I R+KGLGEM   QL ET MD   R 
Sbjct: 712 YIVRNDKRR----TVTHFGEALEWFIEEGKKGLNIQRYKGLGEMNPDQLWETTMDRESRR 767

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           LL V I   +       +    LMG + + R  FI++ A  ++++ 
Sbjct: 768 LLSVSIEDAVM----ADEIFTTLMGDQVEPRRLFIEQNALAVENLD 809


>gi|153209811|ref|ZP_01947513.1| DNA gyrase, B subunit [Coxiella burnetii 'MSU Goat Q177']
 gi|120575235|gb|EAX31859.1| DNA gyrase, B subunit [Coxiella burnetii 'MSU Goat Q177']
          Length = 808

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 231/562 (41%), Positives = 347/562 (61%), Gaps = 19/562 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           + SA   YD+S+I++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ +
Sbjct: 2   SVSAPQKYDSSTIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGFCS 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +G ++V DNGRGIP + HP+   +S  E+I+T LHAGGKFD + Y++SGGLH
Sbjct: 62  HIWVTIHADGSVSVRDNGRGIPTDIHPE-EGRSAAEVIMTVLHAGGKFDKNAYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVGISVVNALS+EL++T+ +   I++Q +  G+P +PL    K  +K GT I F+P   I
Sbjct: 121 GVGISVVNALSEELYMTIRQNGNIYTQTYKMGVPQAPLAVTGK-SDKTGTEIRFKPSNAI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   F    L K  +  A+L+  V+   + ++           + F + GG+K +++ 
Sbjct: 180 FSNT-EFHYDILAKRLRELAFLNLGVRIELTDERS-------GRGDIFEYEGGIKAFVEH 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             + ++ I S++F   TEK       VE A+ W +     I  + N I  ++GGTH +G 
Sbjct: 232 LNKKKTPIHSDVFHFSTEKNDI---VVEVAMQWNDGFQETIFCFTNNIPQNDGGTHLAGF 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y E      K  ++I  DD       +LSV + +P+F+ QTK KLVS + 
Sbjct: 289 RAALTRTLNNYIEGEALAKKSKVTISGDDTREGLTVVLSVKVPDPKFSSQTKDKLVSSEV 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPG 451
           +  VE+ +      YL++NP +A  +   VI+ +  R   RK      RK  +    LPG
Sbjct: 349 KPVVESTVAKQLHDYLLENPKQARIIAMKVIDAARAREAARKARDMTRRKNVLDLGGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +      ELF+VEGDSAGGSAKQAR+R  QA+LPL+GKILNV  A  +K+ ++ 
Sbjct: 409 KLADCQEKDPALCELFLVEGDSAGGSAKQARDRRYQAILPLKGKILNVEKARFDKMLSSA 468

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALGC   + +Y  + LRY ++I+MTDADVDG+HI +LLLTFFY++M +LIE+ 
Sbjct: 469 EVGTLITALGCGIGKEEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAH 592
           H+++  PPL+++ +  +  Y  
Sbjct: 529 HIYIAQPPLYKVKKSKQEQYVK 550



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 8/106 (7%)

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           + +    +        H  + LE F + GK  + I R+KGLGEM   QL ET MD   R 
Sbjct: 710 YIVRNDKRR----TVTHFGEALEWFIEEGKKGLNIQRYKGLGEMNPDQLWETTMDRESRR 765

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           LL V I   +       +    LMG + + R  FI++ A  ++++ 
Sbjct: 766 LLSVSIEDAVM----ADEIFTTLMGDQVEPRRLFIEQNALAVENLD 807


>gi|189485008|ref|YP_001955949.1| DNA gyrase subunit B [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170286967|dbj|BAG13488.1| DNA gyrase subunit B [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 830

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 241/580 (41%), Positives = 357/580 (61%), Gaps = 20/580 (3%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
           +       S  D Y AS+I+ILEGLE VR RP MYIG T  + LHHL  EV+DN++DEV+
Sbjct: 3   NKEVKNESSEKDGYSASNIQILEGLEAVRKRPAMYIGSTGSQGLHHLVYEVVDNSIDEVL 62

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENH--PKFPNKSTLEIILTTLHAGGKFDNSTY 148
           AGY   I+V++  +  +TV+D+GRGIPV+ H  PKF   S LEI+LT LHAGGKFD ++Y
Sbjct: 63  AGYCKNIDVTVHSDNSITVLDDGRGIPVDPHPDPKFKGVSALEIVLTKLHAGGKFDKNSY 122

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+S VNALSD L   V R   ++ Q +S+G PL P+++   V  +RGT++T
Sbjct: 123 KVSGGLHGVGVSCVNALSDLLKAEVYRNGKVYVQNYSKGKPLCPVKESG-VTEERGTKVT 181

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F PDP+IF     +    L    +  A+L+   +   S +++  ++        F + GG
Sbjct: 182 FHPDPEIFSV-MKYSFDTLANRLRELAFLNAGTRIRISDERDDDKE------HIFDYNGG 234

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           +KT++Q    N+++I+ +      EK   +   VE A+ + +     I ++ N I T EG
Sbjct: 235 IKTFVQYLNTNKNVINKDPIYFVKEKDDVY---VEIAMQYNDSYNELIFTFVNNINTVEG 291

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH SG R ALTR + +Y +  +    + + +  +D+      I+S+ +++P+F GQTKT
Sbjct: 292 GTHLSGFRSALTRSVNEYIKKNEVSKIKDLKLSGEDVREGLTAIISIKVQDPQFEGQTKT 351

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444
           +L + + +  +++ + D    +L +NP  A+++L+  I  +E R   RK RE   RK A+
Sbjct: 352 RLGNSEVEGIMQSVVGDALTTFLEENPGIASQILDKAINAAEAREAARKARELTRRKGAL 411

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADCS+     TELFIVEGDSAGGSAKQ R+RS QA+LPL+GKILNV  +  
Sbjct: 412 DSASLPGKLADCSERDPQKTELFIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKSRL 471

Query: 505 EKIRNNQQIMDLVQALGCRT---RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
            KI  N +I  L+ A+G         +    +RY K+IIMTDADVDGAHI +LLLTFFY+
Sbjct: 472 TKILANDEIRTLITAIGAGIGKEEQDFNINKVRYHKIIIMTDADVDGAHIRTLLLTFFYR 531

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +M  L+++ ++++  PPL+++ +  + +Y   EE   K L
Sbjct: 532 QMPQLLDRGYIYIAQPPLYKVRRNKREMYLDSEEELDKFL 571



 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 6/110 (5%)

Query: 578 PLFRI--TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
           P++R+  T+       ++     +++E  ++ G     I R+KGLGEM   QL ET MD 
Sbjct: 724 PVYRLQDTEKKVQGEIYELYSTTELIETIRELGNKGATIQRYKGLGEMNPEQLWETTMDI 783

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             R LL++ +   +    +T      LMG + + R  FIQ  A  + ++ 
Sbjct: 784 KNRKLLQITLEDAI----ETDRVFTTLMGDQVEPRRLFIQTHALDVRNLD 829


>gi|170719191|ref|YP_001746879.1| DNA gyrase subunit B [Pseudomonas putida W619]
 gi|169757194|gb|ACA70510.1| DNA gyrase, B subunit [Pseudomonas putida W619]
          Length = 806

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 226/569 (39%), Positives = 348/569 (61%), Gaps = 18/569 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S +  YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I
Sbjct: 2   SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V +  +  ++V DNGRGIPV+ H K    S  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  TVIIHTDESISVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS++L +TV R   I+ Q +  G+P +P+    +     GT I F+P  + F 
Sbjct: 121 GVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGE-SETTGTHIHFKPSAETFK 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++   
Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGILLKDERSGKE-------EFFKYEGGLRAFVEYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++S++F    +++      VE A+ W +     +  + N I   +GGTH  G R 
Sbjct: 232 TNKTPVNSQVFHFNVQRED--GVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 289

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           +LTR +  Y E      K  +S   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 290 SLTRSLNSYIEQEGLAKKNKVSTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 349

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPGKL
Sbjct: 350 AVEQEMNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 409

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 410 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 469

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF++++ +L+E+ ++
Sbjct: 470 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGYI 529

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++  PPL+++ +G +  Y  D+E  ++ +
Sbjct: 530 YIAQPPLYKVKKGKQEQYIKDDEAMEEYM 558



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             ++ L+        +  I R+KGLGEM   QL ET MD   R +L+V I   +      
Sbjct: 720 EFKEGLDWLMNETTKRHTIQRYKGLGEMNPDQLWETTMDPTVRRMLKVTIEDAI----AA 775

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
               N LMG   + R  FI+  A  + ++ 
Sbjct: 776 DQIFNTLMGDAVEPRRDFIESNALSVSNLD 805


>gi|308188123|ref|YP_003932254.1| topoisomerase IV, subunit B [Pantoea vagans C9-1]
 gi|308058633|gb|ADO10805.1| putative topoisomerase IV, subunit B [Pantoea vagans C9-1]
          Length = 606

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 237/624 (37%), Positives = 346/624 (55%), Gaps = 26/624 (4%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MY   TD    +HL  EVIDN++DE + G+A  +EV L  +  L V+D+GRG+PV+ HP+
Sbjct: 1   MY---TDTTRPNHLGQEVIDNSVDEALGGHAKRVEVILHADQSLEVIDDGRGMPVDIHPE 57

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
                 +E+IL  LHAGGKF N  Y+ SGGLHGVGISVVNALS  + VTV R   I+   
Sbjct: 58  -EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVTVRRNGEIYDMA 116

Query: 184 FSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
           F  G  +  L     V +   GTR+ F PD + F D   F  +RL  + ++KA L   V+
Sbjct: 117 FENGDKVQDLTVTGTVAKRNTGTRVHFWPD-ESFFDSPRFSVSRLSHLLKAKAVLCPGVE 175

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
             +       E       + + +  GL  YL   +     +  + F G           V
Sbjct: 176 IVFKDKLNNTE-------QRWCYEDGLTDYLCEAVNGLPTLPEKPFVGSFAGDVE---AV 225

Query: 303 EWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAISIIS 359
           +WA+ W  E  E    SY N I T +GGTH +GLR  L   ++++ E      R + + +
Sbjct: 226 DWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSA 285

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           +D+      +LSV +++P+FAGQTK +L S      V   ++D F  +L QN   A  L 
Sbjct: 286 EDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFSLWLNQNIQTAEMLA 345

Query: 420 EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           E  I  ++ R+R    ++V RK       LPGKLADC+    + TELF+VEGDSAGGSAK
Sbjct: 346 ELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADCTAQDLNKTELFLVEGDSAGGSAK 403

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
           QAR+R  QA++PL+GKILN     S+++  +Q++ D+  A+G    S+     LRY K+ 
Sbjct: 404 QARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSEDL-SQLRYGKIC 462

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599
           I+ DAD DG HIA+LL   F +    L+   H+++  PPL+RI  G +  YA DE+ K+ 
Sbjct: 463 ILADADSDGLHIATLLCALFVKHFRSLVRNGHVYVAMPPLYRIDLGKEVYYALDEDEKEG 522

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
           +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N R L+++ I++    +  T   +
Sbjct: 523 VLEQLKRK-KGKPNVQRFKGLGEMNPLQLRETTLDPNTRRLVQLTISE--EDVDQTLRMM 579

Query: 660 NKLMGTK-ADERFKFIQERASFID 682
           + L+  K +++R  ++QE+    D
Sbjct: 580 DMLLAKKRSEDRRNWLQEKGDLAD 603


>gi|163842400|ref|YP_001626804.1| DNA gyrase subunit B [Brucella suis ATCC 23445]
 gi|254705305|ref|ZP_05167133.1| DNA gyrase subunit B [Brucella suis bv. 3 str. 686]
 gi|261756016|ref|ZP_05999725.1| DNA gyrase subunit B [Brucella suis bv. 3 str. 686]
 gi|163673123|gb|ABY37234.1| DNA gyrase, B subunit [Brucella suis ATCC 23445]
 gi|261745769|gb|EEY33695.1| DNA gyrase subunit B [Brucella suis bv. 3 str. 686]
          Length = 813

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 236/597 (39%), Positives = 346/597 (57%), Gaps = 23/597 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           N  A   Y A SIR+L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+A 
Sbjct: 8   NSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAT 67

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
           L+ V+L+ +G  TV DNGRGIP + H K    S  E+I+T LHAGGKFD ++Y++SGGLH
Sbjct: 68  LVTVTLNADGSCTVTDNGRGIPTDIH-KEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 126

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS  L + + R   I    F+ G+  +PL       ++ GT ++F P P  
Sbjct: 127 GVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSFLPSPDT 186

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     FD   L +  +  A+L+  V+   +  +    K         ++ GGL  +++ 
Sbjct: 187 FS-MVEFDYETLERRLRELAFLNSGVRIKLADRRHADVKEQE-----LHYDGGLVEFVKY 240

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             +++  +  E    ++EK G    TVE A+ W +    ++  + N I   +GGTH +G 
Sbjct: 241 IDQSKKSLLEEPIYIRSEKDG---MTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGF 297

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR I  YA+ +    K  + +  DD       +LSV + +P+F+ QTK KLVS + 
Sbjct: 298 RGALTRQITGYADSSGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEV 357

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
           +  VE  + +    +L ++P     ++E VI+ +  R   RK R++ RK+ +    LPGK
Sbjct: 358 RPVVEGLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDITRKSNLSVTSLPGK 417

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +     +E+FIVEGDSAGGSAK  R+R NQA+LPLRGKILNV     +++ ++ Q
Sbjct: 418 LADCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQ 477

Query: 513 IMDLVQALGCRTRSQYRE----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +  L+ ALG             + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE
Sbjct: 478 VGTLITALGTSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIE 537

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           + H+++  PPL+++T+G  S Y  +E   +  L E          ++     GEM A
Sbjct: 538 RGHIYIAQPPLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELVT-----GEMRA 589



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 9/112 (8%)

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
            + PP+ R  +  K            +L+     G+  + + R+KGLGEM A QL ET +
Sbjct: 710 FMEPPVLR--RKDKVE---SLSGPVALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETTL 764

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D N R+LL+V++N       D     ++LMG + + R +FIQ+ A  + ++ 
Sbjct: 765 DPNVRSLLQVKVNDAT----DADSLFSRLMGDEVEPRREFIQDNALNVANLD 812


>gi|161618113|ref|YP_001592000.1| DNA gyrase subunit B [Brucella canis ATCC 23365]
 gi|260567232|ref|ZP_05837702.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|161334924|gb|ABX61229.1| DNA gyrase, B subunit [Brucella canis ATCC 23365]
 gi|260156750|gb|EEW91830.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
          Length = 813

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 236/597 (39%), Positives = 346/597 (57%), Gaps = 23/597 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           N  A   Y A SIR+L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+A 
Sbjct: 8   NSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAT 67

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
           L+ V+L+ +G  TV DNGRGIP + H K    S  E+I+T LHAGGKFD ++Y++SGGLH
Sbjct: 68  LVTVTLNADGSCTVTDNGRGIPTDIH-KEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 126

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS  L + + R   I    F+ G+  +PL       ++ GT ++F P P  
Sbjct: 127 GVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSFLPSPDT 186

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     FD   L +  +  A+L+  V+   +  +    K         ++ GGL  +++ 
Sbjct: 187 FS-MVEFDYETLERRLRELAFLNSGVRIKLADRRHADVKEQE-----LHYDGGLVEFVKY 240

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             +++  +  E    ++EK G    TVE A+ W +    ++  + N I   +GGTH +G 
Sbjct: 241 IDQSKKSLLEEPIYIRSEKDG---MTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGF 297

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR I  YA+ +    K  + +  DD       +LSV + +P+F+ QTK KLVS + 
Sbjct: 298 RGALTRQITGYADSSGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEV 357

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
           +  VE  + +    +L ++P     ++E VI+ +  R   RK R++ RK+ +    LPGK
Sbjct: 358 RPVVEGLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDITRKSNLSVTSLPGK 417

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +     +E+FIVEGDSAGGSAK  R+R NQA+LPLRGKILNV     +++ ++ Q
Sbjct: 418 LADCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQ 477

Query: 513 IMDLVQALGCRTRSQYRE----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +  L+ ALG             + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE
Sbjct: 478 VGTLITALGTSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIE 537

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           + H+++  PPL+++T+G  S Y  +E   +  L E          ++     GEM A
Sbjct: 538 RGHIYIAQPPLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELVT-----GEMRA 589



 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 9/112 (8%)

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
            + PP+ R  +  K            +L+     G+  + + R+KGLGEM A QL ET +
Sbjct: 710 FMEPPVLR--RKDKVE---SLSGPVALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETIL 764

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D N R+LL+V++N       D     ++LMG + + R +FIQ+ A  + ++ 
Sbjct: 765 DPNVRSLLQVKVNDAT----DADSLFSRLMGDEVEPRREFIQDNALNVANLD 812


>gi|23501039|ref|NP_697166.1| DNA gyrase subunit B [Brucella suis 1330]
 gi|23346904|gb|AAN29081.1| DNA gyrase, B subunit [Brucella suis 1330]
          Length = 810

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 236/597 (39%), Positives = 346/597 (57%), Gaps = 23/597 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           N  A   Y A SIR+L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+A 
Sbjct: 5   NSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAT 64

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
           L+ V+L+ +G  TV DNGRGIP + H K    S  E+I+T LHAGGKFD ++Y++SGGLH
Sbjct: 65  LVTVTLNADGSCTVTDNGRGIPTDIH-KEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 123

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS  L + + R   I    F+ G+  +PL       ++ GT ++F P P  
Sbjct: 124 GVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSFLPSPDT 183

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     FD   L +  +  A+L+  V+   +  +    K         ++ GGL  +++ 
Sbjct: 184 FS-MVEFDYETLERRLRELAFLNSGVRIKLADRRHADVKEQE-----LHYDGGLVEFVKY 237

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             +++  +  E    ++EK G    TVE A+ W +    ++  + N I   +GGTH +G 
Sbjct: 238 IDQSKKSLLEEPIYIRSEKDG---MTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGF 294

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR I  YA+ +    K  + +  DD       +LSV + +P+F+ QTK KLVS + 
Sbjct: 295 RGALTRQITGYADSSGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEV 354

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
           +  VE  + +    +L ++P     ++E VI+ +  R   RK R++ RK+ +    LPGK
Sbjct: 355 RPVVEGLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDITRKSNLSVTSLPGK 414

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +     +E+FIVEGDSAGGSAK  R+R NQA+LPLRGKILNV     +++ ++ Q
Sbjct: 415 LADCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQ 474

Query: 513 IMDLVQALGCRTRSQYRE----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +  L+ ALG             + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE
Sbjct: 475 VGTLITALGTSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIE 534

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           + H+++  PPL+++T+G  S Y  +E   +  L E          ++     GEM A
Sbjct: 535 RGHIYIAQPPLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELVT-----GEMRA 586



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 9/112 (8%)

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
            + PP+ R  +  K            +L+     G+  + + R+KGLGEM A QL ET +
Sbjct: 707 FMEPPVLR--RKDKVE---SLSGPVALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETTL 761

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D N R+LL+V++N       D     ++LMG + + R +FIQ+ A  + ++ 
Sbjct: 762 DPNVRSLLQVKVNDAT----DADSLFSRLMGDEVEPRREFIQDNALNVANLD 809


>gi|315125115|ref|YP_004067118.1| DNA gyrase subunit B [Pseudoalteromonas sp. SM9913]
 gi|315013628|gb|ADT66966.1| DNA gyrase subunit B [Pseudoalteromonas sp. SM9913]
          Length = 808

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 226/581 (38%), Positives = 350/581 (60%), Gaps = 18/581 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I V
Sbjct: 2   SENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDDIYV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +G ++V DNGRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHLDGSVSVRDNGRGIPTSIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L +T+ R+  +  Q ++ G+P +PL          GT I F P  + F + 
Sbjct: 121 SVVNALSEKLKLTIRREGKLHEQFYTMGVPDAPLAVIGD-SETNGTEIRFWPSGETFTNL 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V    S ++E        + + F + GG++ +++    N
Sbjct: 180 -DFHYDILAKRLRELSFLNSGVSIILSDERE------ENKSDHFKYEGGIRAFVEYLNRN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ +   +F    E++     +VE ++ W +     I  + N I   +GGTH +G R AL
Sbjct: 233 KTPVHKGVFHFTHERE-EDGISVEVSMQWNDAFQENIYCFTNNIPQRDGGTHLAGFRSAL 291

Query: 339 TRGIKKYA----ELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           TR +  Y        + K   +   DD       ++SV + +P+F+ QTK KLVS + + 
Sbjct: 292 TRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKS 351

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE A+ + F  +L++NP++A  ++  +I+ +  R   RK R    RK A+    LPGKL
Sbjct: 352 AVEQAMAEKFTEFLLENPLDAKIVVGKIIDAARAREAARKAREMTRRKGAMDLAGLPGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 412 ADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 471

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC   R +Y  E LRY ++IIMTDADVDG+HI +LLLTFFY++M +++E+ ++
Sbjct: 472 ATLITALGCGIGRDEYNPEKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGYI 531

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613
           ++  PPL+++ +G +  Y  D+      L            
Sbjct: 532 YIAQPPLYKVKKGKQERYIKDDPALVDYLTSLALSNAALYT 572



 Score =  133 bits (334), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G K+      ++    LE      K  I I R+KGLGEM  +QL ET MD + R +L
Sbjct: 711 IQRGEKT---KPVDNFVDALEWLIAESKRGIYIQRYKGLGEMNPNQLWETTMDPSARRML 767

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R +FI+  A  + ++ 
Sbjct: 768 QVTIEDAV----AADQLFATLMGDQVEPRREFIETNALRVVNLD 807


>gi|306844398|ref|ZP_07476988.1| DNA gyrase, B subunit [Brucella sp. BO1]
 gi|306275211|gb|EFM56961.1| DNA gyrase, B subunit [Brucella sp. BO1]
          Length = 813

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 232/577 (40%), Positives = 340/577 (58%), Gaps = 18/577 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           N  A   Y A SIR+L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+A 
Sbjct: 8   NSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAT 67

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
           L+ V+L+ +G  TV DNGRGIP + H K    S  E+I+T LHAGGKFD ++Y++SGGLH
Sbjct: 68  LVTVTLNADGSCTVTDNGRGIPTDIH-KEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 126

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS  L + + R   I    F+ G+  +PL       ++ GT ++F P P  
Sbjct: 127 GVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSFLPSPDT 186

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     FD   L +  +  A+L+  V+   +  +    K         ++ GGL  +++ 
Sbjct: 187 FS-MVEFDYETLERRLRELAFLNSGVRIKLADRRHADVKEQE-----LHYDGGLVEFVKY 240

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             +++  +  E    ++EK G    TVE A+ W +    ++  + N I   +GGTH +G 
Sbjct: 241 IDQSKKSLLEEPIYIRSEKDG---MTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGF 297

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR I  YA+ +    K  + +  DD       +LSV + +P+F+ QTK KLVS + 
Sbjct: 298 RGALTRQITGYADSSGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEV 357

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
           +  VE  + +    +L ++P     ++E VI+ +  R   RK R++ RK+ +    LPGK
Sbjct: 358 RPVVEGLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDITRKSNLSVTSLPGK 417

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +     +E+FIVEGDSAGGSAK  R+R NQA+LPLRGKILNV     +++ ++ Q
Sbjct: 418 LADCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQ 477

Query: 513 IMDLVQALGCRTRSQYRE----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +  L+ ALG             + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE
Sbjct: 478 VGTLITALGTSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIE 537

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605
           + H+++  PPL+++T+G  S Y  +E   +  L E  
Sbjct: 538 RGHIYIAQPPLYKVTRGKSSQYIKNEAAFEDFLIETG 574



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 9/112 (8%)

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
            + PP+ R       V A        +L+     G+  + + R+KGLGEM A QL ET +
Sbjct: 710 FMEPPVLR---RKDKVEALSGP--VALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETTL 764

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D N R+LL+V++N       D     ++LMG + + R +FIQ+ A  + ++ 
Sbjct: 765 DPNVRSLLQVKVNDAT----DADSLFSRLMGDEVEPRREFIQDNALNVANLD 812


>gi|254718345|ref|ZP_05180156.1| DNA gyrase subunit B [Brucella sp. 83/13]
 gi|265983305|ref|ZP_06096040.1| hypothetical protein BAKG_01418 [Brucella sp. 83/13]
 gi|306839568|ref|ZP_07472374.1| DNA gyrase, B subunit [Brucella sp. NF 2653]
 gi|306842586|ref|ZP_07475236.1| DNA gyrase, B subunit [Brucella sp. BO2]
 gi|264661897|gb|EEZ32158.1| hypothetical protein BAKG_01418 [Brucella sp. 83/13]
 gi|306287282|gb|EFM58768.1| DNA gyrase, B subunit [Brucella sp. BO2]
 gi|306405354|gb|EFM61627.1| DNA gyrase, B subunit [Brucella sp. NF 2653]
          Length = 813

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 232/577 (40%), Positives = 340/577 (58%), Gaps = 18/577 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           N  A   Y A SIR+L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+A 
Sbjct: 8   NSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAT 67

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
           L+ V+L+ +G  TV DNGRGIP + H K    S  E+I+T LHAGGKFD ++Y++SGGLH
Sbjct: 68  LVTVTLNADGSCTVTDNGRGIPTDIH-KEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 126

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS  L + + R   I    F+ G+  +PL       ++ GT ++F P P  
Sbjct: 127 GVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSFLPSPDT 186

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     FD   L +  +  A+L+  V+   +  +    K         ++ GGL  +++ 
Sbjct: 187 FS-MVEFDYETLERRLRELAFLNSGVRIKLADRRHADVKEQE-----LHYDGGLVEFVKY 240

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             +++  +  E    ++EK G    TVE A+ W +    ++  + N I   +GGTH +G 
Sbjct: 241 IDQSKKSLLEEPIYIRSEKDG---MTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGF 297

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR I  YA+ +    K  + +  DD       +LSV + +P+F+ QTK KLVS + 
Sbjct: 298 RGALTRQITGYADSSGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEV 357

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
           +  VE  + +    +L ++P     ++E VI+ +  R   RK R++ RK+ +    LPGK
Sbjct: 358 RPVVEGLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDITRKSNLSVTSLPGK 417

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +     +E+FIVEGDSAGGSAK  R+R NQA+LPLRGKILNV     +++ ++ Q
Sbjct: 418 LADCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQ 477

Query: 513 IMDLVQALGCRTRSQYRE----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +  L+ ALG             + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE
Sbjct: 478 VGTLITALGTSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIE 537

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605
           + H+++  PPL+++T+G  S Y  +E   +  L E  
Sbjct: 538 RGHIYIAQPPLYKVTRGKSSQYIKNEAAFEDFLIETG 574



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 9/112 (8%)

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
            + PP+ R  +  K            +L+     G+  + + R+KGLGEM A QL ET +
Sbjct: 710 FMEPPVLR--RKDKVE---SLSGPVALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETTL 764

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D N R+LL+V++N       D     ++LMG + + R +FIQ+ A  + ++ 
Sbjct: 765 DPNVRSLLQVKVNDAT----DADSLFSRLMGDEVEPRREFIQDNALNVANLD 812


>gi|114704720|ref|ZP_01437628.1| DNA gyrase subunit B [Fulvimarina pelagi HTCC2506]
 gi|114539505|gb|EAU42625.1| DNA gyrase subunit B [Fulvimarina pelagi HTCC2506]
          Length = 812

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 235/571 (41%), Positives = 333/571 (58%), Gaps = 15/571 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S  Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+A+ + V
Sbjct: 12  SAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHADHVTV 71

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L+ +G  +V DNGRGIP   H      S  E+I+T LHAGGKFD ++Y++SGGLHGVG+
Sbjct: 72  TLNADGSCSVSDNGRGIPTGIHS-GEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGV 130

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS  L + + ++  IF   F+ G+   PL          GT ITF P    F   
Sbjct: 131 SVVNALSVWLKLKIRQKGKIFEMAFTHGVADGPLAVVGDAGEVTGTEITFMPSHDTFRGV 190

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             FD + L    +  A+L+  V+   +  +   EK         ++ GGL+ +++     
Sbjct: 191 TAFDYSTLEHRLRELAFLNSGVRIILTDKRPADEKRIE-----LFYEGGLEAFVRYVDRA 245

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  + S   +   EK G    TVE A+ W +     +  + N I   +GGTH +G R AL
Sbjct: 246 KKPLISTPISLTGEKDGI---TVEVAMWWNDAYNENVLCFTNNIPQRDGGTHLAGFRGAL 302

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  YAE +    K  +++  DD       ILSV + +P+F+ QTK KLVS + +  V
Sbjct: 303 TRQVGGYAEASGLLKKEKVTLTGDDCREGLSCILSVKVPDPKFSSQTKDKLVSSEVRPVV 362

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLAD 455
           EN +      +  +NP EA  ++  V+E +  R   R+      RK A+    LPGKLAD
Sbjct: 363 ENLVNQGLSEWFEENPQEAKIVISKVVEAAAARDAARRARELTRRKGALDITSLPGKLAD 422

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +E+FIVEGDSAGGSAK  R+R NQA+LPLRGKILNV  A  +++  + QI  
Sbjct: 423 CQERDPAKSEIFIVEGDSAGGSAKGGRSRQNQAILPLRGKILNVERARFDRMLGSDQIGT 482

Query: 516 LVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALG          + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE+ H+F+
Sbjct: 483 LITALGTSIGKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHVFI 542

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605
             PPL+++T+G +S Y  DE+  +  L E  
Sbjct: 543 AQPPLYKVTRGKQSQYLKDEKALENYLIEGG 573



 Score =  126 bits (317), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           ++L    + G+  I   R+KGLGEM + QL ET +D + RTL+RV++        D  + 
Sbjct: 729 QLLITVFEVGRKGITTQRYKGLGEMNSDQLWETTLDPDARTLVRVKVQDAT----DADNL 784

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             +LMG +   R +FIQ+ A  + ++ 
Sbjct: 785 FAQLMGDEVAPRREFIQDNALTVANLD 811


>gi|49474867|ref|YP_032908.1| DNA gyrase subunit B [Bartonella henselae str. Houston-1]
 gi|49237672|emb|CAF26857.1| DNA gyrase subunit B [Bartonella henselae str. Houston-1]
          Length = 810

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 233/572 (40%), Positives = 335/572 (58%), Gaps = 16/572 (2%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYA 94
            +Q   D+Y A+SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+A
Sbjct: 6   TSQMEGDDYGAASIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHA 65

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
            L+ V+L  +G  +V DNGRGIP + HP     S  E+I+T LHAGGKFD ++Y++SGGL
Sbjct: 66  TLVNVTLHADGSCSVRDNGRGIPTDIHP-TEGVSAAEVIMTQLHAGGKFDQNSYKVSGGL 124

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS  L + + R   I    F+ G+  +PL+       + G+ I F P  +
Sbjct: 125 HGVGVSVVNALSVWLQLRIRRNGKIHEMSFTHGVADAPLKIVGDCGKESGSEIRFLPSSE 184

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
            F     FD   L +  +  A+L+  V       +    K         ++ GGL  +++
Sbjct: 185 TFT-MVEFDFETLERRLRELAFLNSGVHILLVDQRHADIKSVE-----LHYEGGLTEFVK 238

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +++  +        +EK G     VE A+ W +    ++  + N I   +GGTH  G
Sbjct: 239 YIDQSKKALLDHPIYITSEKDG---MNVEVALWWNDSYHEKVLCFTNNIPQRDGGTHLVG 295

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR I  YAE +    K  +++  DD       ILSV + +P+F+ QTK KLVS +
Sbjct: 296 FRSALTRQINGYAESSGIVKKEKVNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSE 355

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VEN + +    +L ++P EA  +   V+E +  R   RK RE   RK A+    LP
Sbjct: 356 VRPIVENLVNEGLSAWLEEHPNEAKIVTSKVVEAAAAREAARKARELTRRKGALDITSLP 415

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +E+FIVEGDSAGGSAK  R+R NQA+LPLRGKILNV  A  +++ ++
Sbjct: 416 GKLADCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERARFDRMLSS 475

Query: 511 QQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
             I  L+ ALG          + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE+
Sbjct: 476 DMIGTLITALGTSIGKDEFSPDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIER 535

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
            HL++  PPL+++T+G    Y  +E   ++ L
Sbjct: 536 GHLYIAQPPLYKVTRGKSFQYIKNEAAFEEFL 567



 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +LE    +GK  I + R+KGLGEM A QL ET ++ + R LL+V+IN       D    
Sbjct: 727 SLLESIFTNGKKGITLQRYKGLGEMNAEQLWETTLNPDARALLQVKINDAT----DADSL 782

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            ++LMG + + R  FIQ+ A  + ++ 
Sbjct: 783 FSRLMGDEVEPRRAFIQDNALSVANLD 809


>gi|28867247|ref|NP_789866.1| DNA gyrase subunit B [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213968438|ref|ZP_03396581.1| DNA gyrase, subunit B [Pseudomonas syringae pv. tomato T1]
 gi|301384274|ref|ZP_07232692.1| DNA gyrase subunit B [Pseudomonas syringae pv. tomato Max13]
 gi|302063876|ref|ZP_07255417.1| DNA gyrase subunit B [Pseudomonas syringae pv. tomato K40]
 gi|302131959|ref|ZP_07257949.1| DNA gyrase subunit B [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28850481|gb|AAO53561.1| DNA gyrase, subunit B [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213926726|gb|EEB60278.1| DNA gyrase, subunit B [Pseudomonas syringae pv. tomato T1]
 gi|331017722|gb|EGH97778.1| DNA gyrase subunit B [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 805

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 226/569 (39%), Positives = 343/569 (60%), Gaps = 19/569 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S +  YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I
Sbjct: 2   SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            + +  +  +TV DNGRGIPV+ H K    S  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  SIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+I F+P  + F 
Sbjct: 121 GVSVVNALSELLLLTVRRSGKIWEQTYIHGVPQEPMKIVGE-SDSTGTQIHFKPSAETFK 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++   
Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++           G     VE A+ W +     +  + N I   +GGTH  G R 
Sbjct: 232 TNKTPVNEVFHFNVQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 289 ALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPGKL
Sbjct: 349 AVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 468

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++
Sbjct: 469 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++  PPL+++ +G +  Y  D+E  ++ +
Sbjct: 529 YIAQPPLYKVKKGKQEQYIKDDEAMEEYM 557



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             ++ L         +  I R+KGLGEM   QL ET MD + R +L+V I   +      
Sbjct: 719 EFKQALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIG----A 774

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
               N LMG   + R  FI+  A  + ++ 
Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804


>gi|127510939|ref|YP_001092136.1| DNA gyrase, B subunit [Shewanella loihica PV-4]
 gi|126636234|gb|ABO21877.1| DNA gyrase subunit B [Shewanella loihica PV-4]
          Length = 805

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 232/594 (39%), Positives = 354/594 (59%), Gaps = 30/594 (5%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGY N + 
Sbjct: 2   SENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCNDVI 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           +++  +G ++V D+GRGIPV  HP+    S  ++I+T LHAGGKFD+++Y++SGGLHGVG
Sbjct: 62  ITIHADGSVSVKDDGRGIPVAIHPE-EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS++L +T+ R   ++ Q ++ G P +P+ +     N  GT I F P  + F D
Sbjct: 121 VSVVNALSEKLKLTIRRDGKLYEQFYTMGEPDAPIAEIGDATN-TGTEIRFWPSAETFSD 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      +++  +       E F + GG+  ++     
Sbjct: 180 TL-FHFDILAKRVRELSFLNSGVGIRLIDERDNKD-------EFFKYEGGISAFVDYLNL 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++ EIF    E++     TVE A+ W +     I  + N I   +GGTH +G R A
Sbjct: 232 NKTPVNKEIFHFVQERED--GITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAA 289

Query: 338 LTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y +      K   S   DD       ++SV + +P+F+ QTK KLVS + +  
Sbjct: 290 LTRNLNSYMDKEGFNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSA 349

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454
           VE  + +    YL++NP EA  ++  +I+ +  R   RK R    RK A+    LPGKLA
Sbjct: 350 VEQTMGEKLGDYLLENPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLA 409

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++ 
Sbjct: 410 DCQEKDPALSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 469

Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            L+ ALGC   R +Y  +  RY  ++IMTDADVDG+HI +LLLTFF+++M +LIE+ ++F
Sbjct: 470 TLITALGCGIGRDEYDPDKTRYHNIVIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVF 529

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +  PPL+++ +G +  Y  D+    + L      G            GE+  SQ
Sbjct: 530 IAQPPLYKVKKGKQEQYLKDDPALTEYLTNLALDG------------GEIHPSQ 571



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
             L+      K  + I R+KGLGEM   QL ET MD   R +L+V I   +         
Sbjct: 722 DALDWLMNDSKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLKVTIEDAI----AADQL 777

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
              LMG + + R  FI+  A  + ++ 
Sbjct: 778 FTCLMGDQVEPRRDFIESNALNVANLD 804


>gi|212217692|ref|YP_002304479.1| DNA gyrase subunit B [Coxiella burnetii CbuK_Q154]
 gi|212011954|gb|ACJ19334.1| DNA gyrase subunit B [Coxiella burnetii CbuK_Q154]
          Length = 810

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 231/562 (41%), Positives = 347/562 (61%), Gaps = 19/562 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           + SA   YD+S+I++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ +
Sbjct: 4   SVSAPQKYDSSTIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGFCS 63

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +G ++V DNGRGIP + HP+   +S  E+I+T LHAGGKFD + Y++SGGLH
Sbjct: 64  HIWVTIHADGSVSVRDNGRGIPTDIHPE-EGRSAAEVIMTVLHAGGKFDKNAYKVSGGLH 122

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVGISVVNALS+EL++T+ +   I++Q +  G+P +PL    K  +K GT I F+P   I
Sbjct: 123 GVGISVVNALSEELYMTIRQNGNIYTQTYKMGVPQAPLAVTGK-SDKTGTEIRFKPSNAI 181

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   F    L K  +  A+L+  V+   + ++           + F + GG+K +++ 
Sbjct: 182 FSNT-EFHYDILAKRLRELAFLNLGVRIELTDERS-------GRGDIFEYEGGIKAFVEH 233

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             + ++ I S++F   TEK       VE A+ W +     I  + N I  ++GGTH +G 
Sbjct: 234 LNKKKTPIHSDVFHFSTEKNDI---VVEVAMQWNDGFQETIFCFTNNIPQNDGGTHLAGF 290

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y E      K  ++I  DD       +LSV + +P+F+ QTK KLVS + 
Sbjct: 291 RAALTRTLNNYIEGEALAKKSKVTISGDDTREGLTVVLSVKVPDPKFSSQTKDKLVSSEV 350

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPG 451
           +  VE+ +      YL++NP +A  +   VI+ +  R   RK      RK  +    LPG
Sbjct: 351 KPVVESTVAKQLHDYLLENPKQARIIAMKVIDAARAREAARKARDMTRRKNVLDLGGLPG 410

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +      ELF+VEGDSAGGSAKQAR+R  QA+LPL+GKILNV  A  +K+ ++ 
Sbjct: 411 KLADCQEKDPALCELFLVEGDSAGGSAKQARDRRYQAILPLKGKILNVEKARFDKMLSSA 470

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALGC   + +Y  + LRY ++I+MTDADVDG+HI +LLLTFFY++M +LIE+ 
Sbjct: 471 EVGTLITALGCGIGKEEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERG 530

Query: 571 HLFLISPPLFRITQGTKSVYAH 592
           H+++  PPL+++ +  +  Y  
Sbjct: 531 HIYIAQPPLYKVKKSKQEQYVK 552



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 8/106 (7%)

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           + +    +        H  + LE F + GK  + I R+KGLGEM   QL ET MD   R 
Sbjct: 712 YIVRNDKRR----TVTHFGEALEWFIEEGKKGLNIQRYKGLGEMNPDQLWETTMDRESRR 767

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           LL V I   +       +    LMG + + R  FI++ A  ++++ 
Sbjct: 768 LLSVSIEDAVM----ADEIFTTLMGDQVEPRRLFIEQNALAVENLD 809


>gi|270158399|ref|ZP_06187056.1| DNA gyrase B subunit [Legionella longbeachae D-4968]
 gi|289163357|ref|YP_003453495.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella
           longbeachae NSW150]
 gi|269990424|gb|EEZ96678.1| DNA gyrase B subunit [Legionella longbeachae D-4968]
 gi|288856530|emb|CBJ10325.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella
           longbeachae NSW150]
          Length = 805

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 229/576 (39%), Positives = 355/576 (61%), Gaps = 19/576 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S   +YD+++I++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGY   I
Sbjct: 2   SVDASYDSNNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKEI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V++  +  +TV D+GRGIPV+ H K   +S  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  FVTIHSDESITVKDDGRGIPVDIH-KEEGRSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+ELH+TV R   I  Q++  G+P +P+ +        GT+I F+P    F 
Sbjct: 121 GVSVVNALSEELHLTVRRHGKIHEQRYRNGVPDAPMAETGDAT-TTGTQIWFKPSADTFS 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  +YL+  V      ++          ++ F++ GG+K +++   
Sbjct: 180 NI-EFHYDILAKRLRELSYLNSGVCIHLFDERSQ-------RQDTFHYEGGIKAFVEHLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRV 336
           +N+++I   +F+   EK+      VE ++ W +   E    + N I   +GGTH +G R 
Sbjct: 232 KNKNVIMPIVFSMTAEKENI---VVELSMQWNDSYQETLYCFTNNIPQRDGGTHMAGFRA 288

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  +S   DD       ILSV + +P+F+ QTK KLVS + + 
Sbjct: 289 ALTRTLNNYIESEGYAKKAKVSPTGDDAREGLTAILSVKVPDPKFSSQTKDKLVSSEVKS 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE+++ + F+ +L++NP  A  ++  +I+ +  R   R+ R    RK A+    LPGKL
Sbjct: 349 VVESSVAEKFNDFLLENPSSAKAIVAKIIDAARAREAARRAREMTRRKGALDIAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKMLSSQEV 468

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC     +Y  + +RY ++IIMTDADVDG+HI +LLLTFFY++  +LIE+ ++
Sbjct: 469 ATLITALGCGIGPDEYDPDKVRYHRIIIMTDADVDGSHIRTLLLTFFYRQTPELIERGYI 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++  PPL+++ +G +  Y  D+E   + L +    G
Sbjct: 529 YIAQPPLYKVKRGKQEQYVKDDEALFEYLTQSALDG 564



 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G K +     E  ++ L+   +  K    I R+KGLGEM   QL ET MD   R +L
Sbjct: 708 IKRGDKELAV---ESFEQALDWLMEEAKRGQTIQRYKGLGEMNPEQLWETTMDPTVRRML 764

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG   + R +FI+  A   +++ 
Sbjct: 765 QVNIEDAV----AADAIFTTLMGDNVEPRREFIEFNALEAENID 804


>gi|15606321|ref|NP_213700.1| gyrase B [Aquifex aeolicus VF5]
 gi|4033398|sp|O67137|GYRB_AQUAE RecName: Full=DNA gyrase subunit B
 gi|2983522|gb|AAC07098.1| gyrase B [Aquifex aeolicus VF5]
          Length = 792

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 220/581 (37%), Positives = 335/581 (57%), Gaps = 18/581 (3%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
                     Y A +I+ + GLE VR+RP MYIG   E+ LHHL  E++DNA+DE +AGY
Sbjct: 2   KKRQSQTPQEYTAEAIKAVSGLEHVRLRPAMYIGDIGERGLHHLIWEILDNAVDEAVAGY 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A  I V++  +  +TV D+GRGIPV+ HP+   K  +E++ T L AGGKF+   Y  SGG
Sbjct: 62  ARNISVTIHRDNSVTVEDDGRGIPVDIHPE-TGKPAVEMVFTMLGAGGKFEKKVYTYSGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG SVVNALS+ L V V R   I+   F RG  + PL    + +  RGT+++F+PDP
Sbjct: 121 LHGVGASVVNALSEWLIVEVYRDGKIYRMAFKRGEVVEPLHVVGETKK-RGTKVSFKPDP 179

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IF          + K  +  AYL+  VK   + ++         +   + F  G++  +
Sbjct: 180 EIFETT-EIKFDIVEKRVRELAYLNPEVKFELTDERL-------GKHLIYKFDRGIEELV 231

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   E +  +  +I   + EK+G     V+ A  + ++    I S+ N I T EGGTH +
Sbjct: 232 KYLNEGKEPLFKDIIRIQGEKEGVI---VDIAFQYVKDYKERIESFVNNIKTVEGGTHVT 288

Query: 333 GLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R  L++ + + A+  +  + +      +D+      +++  +  P+F GQTKTKL + 
Sbjct: 289 GFRSGLSKAVIRMAQGLKLAKELKKSFTGEDVREGLTAVVACKVPNPQFEGQTKTKLGNQ 348

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           + ++ VE+   D    Y  +       ++E  IE +  R   +K +E V RK+ + +  L
Sbjct: 349 NVKQIVESITYDFLTSYFEKKRDVLKAIVEKAIEAALAREAAKKAKELVRRKSPLEEGVL 408

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADCS+      E+F+VEGDSAGGSAKQAR+R  QA+LPLRGKI+NV  A  +K+ +
Sbjct: 409 PGKLADCSETDPSKCEIFLVEGDSAGGSAKQARDRRYQAILPLRGKIINVEKARIDKVLS 468

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N +I  +V ALGC        + LRY K+I+MTDADVDG+HI +LLLTFFY+ M  L+E+
Sbjct: 469 NDEIKAIVSALGCGIGEDLDLKKLRYHKIILMTDADVDGSHIRTLLLTFFYRFMPKLVEE 528

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKI-LEEFKKHGK 609
            ++++  PPL+R+ +G K +Y  D++  +   L E ++ G+
Sbjct: 529 GYVYIAEPPLYRVKKGKKEIYIKDDKEFEHFLLNEIREKGR 569



 Score =  133 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           +I ++F    +  +E+ R+KGLGEM   QL ET M+   R L +V+I        +    
Sbjct: 709 EIYDKFMDFARSGMEVQRYKGLGEMNPEQLWETTMNPKTRRLKKVKIED----AAEADRI 764

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
              LMG + + R +FI+  A  +  + 
Sbjct: 765 FTILMGEQVEPRREFIEAYAKEVKHLD 791


>gi|90421533|ref|YP_529903.1| DNA gyrase subunit B [Rhodopseudomonas palustris BisB18]
 gi|90103547|gb|ABD85584.1| DNA gyrase subunit B [Rhodopseudomonas palustris BisB18]
          Length = 813

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 247/586 (42%), Positives = 337/586 (57%), Gaps = 16/586 (2%)

Query: 24  KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVI 82
            +    P +   A+      Y A SIR+L+GL+ VR RPGMYIG TD+   LHH+  EV+
Sbjct: 2   TEPARQPIAEPEASAPVE--YGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVV 59

Query: 83  DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142
           DNA+DE +AG+A  +EV L+ +G +TV D+GRGIPV  H K    S  E+I+T LHAGGK
Sbjct: 60  DNAIDEALAGHATAVEVVLNADGSVTVRDDGRGIPVGIH-KGEGISAAEVIMTQLHAGGK 118

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD ++Y++SGGLHGVG+SVVNALS +L + V R       +F+ G  ++PL        K
Sbjct: 119 FDQNSYKVSGGLHGVGVSVVNALSSKLQLRVWRDGKEHFIEFAHGDAVAPLVVVGDSNGK 178

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
           RGT +TF   P+ F     +D A L    +  A+L+  V    S  +   EK      EE
Sbjct: 179 RGTEVTFLASPETF-THIEYDFATLEHRLRELAFLNSGVTIVLSDLRHPVEKR-----EE 232

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNT 321
             + GG++ +++    N+  +         E  G     VE A+ W +   E    + N 
Sbjct: 233 MMYRGGVEEFVKYLDRNKKAMVPAPIMIAAELNGI---GVEAALWWNDSYHENVLCFTNN 289

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
           I   +GGTH +G R ALTR +  YA++   K  I++  DD       +LSV + +P+F+ 
Sbjct: 290 IPQRDGGTHLAGFRGALTRQVNGYADVIAKKEKIALTGDDCREGLTAVLSVKVPDPKFSS 349

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTK KLVS + +  VEN L +    +  ++P EA  ++  VIE    R   RK RE   R
Sbjct: 350 QTKDKLVSSEVRPVVENVLNEALAAWFEEHPAEAKIIVGKVIEAGAAREAARKARELTRR 409

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR  QAVLPLRGKILNV 
Sbjct: 410 KGALDIASLPGKLADCQERDPAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVE 469

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
            A  +K+  ++QI  L+ ALG    R  +    LRY K+I+MTDADVDGAHI +LLLTFF
Sbjct: 470 RARFDKMLGSEQIGTLITALGTGIGRDDFDISKLRYHKIILMTDADVDGAHIRTLLLTFF 529

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605
           +++M  LIE   L++  PPL+++T+G    Y  DE   +  L E  
Sbjct: 530 FRQMPSLIEGGFLYIAQPPLYKVTRGKSEQYLKDERALEDYLIETG 575



 Score =  110 bits (275), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 5/87 (5%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            + E     G+  + + R+KGLGEM   QL  T +D N R+LL+V++      + +  D 
Sbjct: 731 SLFEAVTDAGRKGVALQRYKGLGEMNPEQLWHTTLDTNARSLLQVKV----REVDEADDI 786

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R +FIQ+ +    +V 
Sbjct: 787 FTKLMGDVVEPRREFIQDNSLSA-NVD 812


>gi|94266205|ref|ZP_01289914.1| DNA gyrase, B subunit [delta proteobacterium MLMS-1]
 gi|93453212|gb|EAT03670.1| DNA gyrase, B subunit [delta proteobacterium MLMS-1]
          Length = 804

 Score =  507 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 232/570 (40%), Positives = 337/570 (59%), Gaps = 17/570 (2%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           N++ + +Y A  I++L GLE VR RP MYIG T  + LHHL  EV+DN++DE +AG+ + 
Sbjct: 7   NETKNMDYGAEQIKVLSGLEGVRKRPAMYIGNTAFEGLHHLVYEVVDNSIDEALAGHCSR 66

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V+L  +G ++V DNGRGIPV  HP     S LE+++ TLHAGGKFD+STY++SGGLHG
Sbjct: 67  IAVTLHKDGSVSVEDNGRGIPVGMHP-TEGVSALELVMCTLHAGGKFDHSTYKVSGGLHG 125

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+SVVNALS      + R   I  Q +  GI  S +E   +     G+RITF PDP+IF
Sbjct: 126 VGVSVVNALSVRTVAEIKRDGKIHRQHYRHGIKESEVEVVGET-EHSGSRITFLPDPEIF 184

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   FD   +    +  A+L+  VK     ++  AE         F+F GGL+++++  
Sbjct: 185 TEITDFDYETIQTRLRELAFLNRGVKILLHDERTGAEDE-------FHFKGGLRSFVEHL 237

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLR 335
             NR+ + +E    + EK       VE    + E  N  +  Y N I T EGG+H  G R
Sbjct: 238 NRNRTPVHAEPIFIEGEKDDVQ---VEVCFQYFEGFNERLYPYVNNIYTKEGGSHVVGFR 294

Query: 336 VALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALT+ I +YA      + +   +  DD+      ++SV +  P+F GQTKTKL + + +
Sbjct: 295 AALTKCINRYASDDIIPKNLREKLSGDDVREGITCVISVRVPNPQFEGQTKTKLGNSEVK 354

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIR-KLRLPGK 452
             VE    +    YL ++P EA K+L   ++ +  R   R+ ++++RK      + L  K
Sbjct: 355 WIVEGICHEKISSYLEEHPQEARKILSKAVDAARAREAARRAKDLSRKKGSGVDVMLAAK 414

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LA+C        E+F+VEGDSAGGSAKQ R+R  QA+LPLRGKI+NV  A  ++I N+++
Sbjct: 415 LAECQSKKPEEREIFLVEGDSAGGSAKQGRDRVFQAILPLRGKIMNVEKARFDRILNSEE 474

Query: 513 IMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           I  ++ ALG     +  + + LRY K+IIMTDADVDGAHI +LLLTFFY++M  LIEQ  
Sbjct: 475 IKQVIAALGTGIGREEFDSDKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMLPLIEQGR 534

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +++  PPLFR+++G K  +  D++     L
Sbjct: 535 VYIGQPPLFRLSRGKKEQFFLDDDSLNNFL 564



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 7/106 (6%)

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           F++    +   A      +++L   +        + R+KGLGEM   QL  T M+   R 
Sbjct: 705 FQVAVKNQQHSA---ADWRELLTVIRAESFKGSSLQRYKGLGEMNPEQLWATTMNPENRI 761

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           LL+V I       +   +    LMG K + R +FIQ  A  +  + 
Sbjct: 762 LLQVRIED----AEKADEIFTTLMGDKVEPRREFIQAHALEVSSLD 803


>gi|298484612|ref|ZP_07002717.1| DNA gyrase subunit B [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298160869|gb|EFI01885.1| DNA gyrase subunit B [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
          Length = 805

 Score =  507 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 226/569 (39%), Positives = 342/569 (60%), Gaps = 19/569 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S +  YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I
Sbjct: 2   SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            + +  +  +TV DNGRGIPV+ H K    S  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  SIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+I F+P    F 
Sbjct: 121 GVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDTTGTQIHFKPSADTFK 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++   
Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++           G     VE A+ W +     +  + N I   +GGTH  G R 
Sbjct: 232 TNKTPVNEVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 289 ALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPGKL
Sbjct: 349 AVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 468

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++
Sbjct: 469 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++  PPL+++ +G +  Y  D+E  ++ +
Sbjct: 529 YIAQPPLYKVKKGKQEQYIKDDEAMEEYM 557



 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
              + L         +  I R+KGLGEM   QL ET MD + R +L+V I   +      
Sbjct: 719 EFNEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIG----A 774

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
               N LMG   + R  FI+  A  + ++ 
Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804


>gi|320355370|ref|YP_004196709.1| DNA gyrase subunit B [Desulfobulbus propionicus DSM 2032]
 gi|320123872|gb|ADW19418.1| DNA gyrase subunit B [Desulfobulbus propionicus DSM 2032]
          Length = 803

 Score =  507 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 231/569 (40%), Positives = 335/569 (58%), Gaps = 16/569 (2%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           ++    +Y A  I++L+GLE VR RP MYIG T  + LHHL  EV+DN++DE +AG+ + 
Sbjct: 2   SELTETSYGAEQIKVLDGLEAVRKRPSMYIGNTGVEGLHHLIYEVVDNSIDEALAGHCDQ 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I + +  +  +TV DNGRGIPV+ HP   N S LE+++TTLHAGGKFD+STY++SGGLHG
Sbjct: 62  ISIVIHEDNAVTVEDNGRGIPVDMHP-TENMSALELVMTTLHAGGKFDHSTYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+SVVNALS      V R   I+ Q +  G+  S LE       + GT I+F+PDP IF
Sbjct: 121 VGVSVVNALSVRTVAQVQRNGKIYRQTYEYGMRTSELEVIG-TSEQTGTSISFKPDPSIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   F+   +    +  A+L+  +      +++ AE         F+F GG+ +Y++  
Sbjct: 180 TETTVFEYEIVKNRMRELAFLNKNIHITLKDERDGAENS-------FHFDGGIVSYVEYL 232

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLR 335
             NR+ +  +      E+       V+  + + +   E    + N I T EGG+H +G R
Sbjct: 233 NRNRTTVHPDPILISGERDTVQ---VDICLQYFDGYSERLFSFVNNINTKEGGSHVAGFR 289

Query: 336 VALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALT+ I +YA      + +      DD+      ++SV +  P+F GQTKTKL + + +
Sbjct: 290 AALTKCINRYASDDIIPKHLKEKMGGDDVREGLTCVISVRVPNPQFEGQTKTKLGNSEVK 349

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
             VE+   +    YL QNP  A  +L   +E +  R   RK R+++R  +   + + GKL
Sbjct: 350 SIVESLCNEKLGAYLEQNPAVARGILNKAVEAARAREAARKARDLSRTKSNISVMMAGKL 409

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           A+C        ELFIVEGDSAGGSAKQ R+R+ QA+LPLRGKI+NV  A  +KI ++++I
Sbjct: 410 AECQSKNPAERELFIVEGDSAGGSAKQGRDRAIQAILPLRGKIMNVEKARFDKILDSEEI 469

Query: 514 MDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             LV +LG    S+  + E LRY K+IIMTDADVDGAHI +LLLTFFY++M  LIE  H+
Sbjct: 470 KQLVASLGTGIGSEEFDLEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMLPLIENGHV 529

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++  PPL+R+ +G K  Y  +EE     L
Sbjct: 530 YIGQPPLYRLGKGKKEQYFLNEEELNAYL 558



 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 4/88 (4%)

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
            +++E  ++       + R+KGLGEM   QL +T M+   RTL++V+I+     ++ T D
Sbjct: 719 HRLIELVREETFKGSHLQRYKGLGEMNPEQLWDTTMNPTNRTLIQVKIDD----VEVTDD 774

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
               LMG K + R +FIQ  A  + D+ 
Sbjct: 775 MFTTLMGDKVEPRREFIQNHALEVADLD 802


>gi|94264231|ref|ZP_01288026.1| DNA gyrase, B subunit [delta proteobacterium MLMS-1]
 gi|93455342|gb|EAT05546.1| DNA gyrase, B subunit [delta proteobacterium MLMS-1]
          Length = 804

 Score =  507 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 231/570 (40%), Positives = 337/570 (59%), Gaps = 17/570 (2%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           N++ + +Y A  I++L GLE VR RP MYIG T  + LHHL  EV+DN++DE +AG+ + 
Sbjct: 7   NETKNMDYGAEQIKVLSGLEGVRKRPAMYIGNTAFEGLHHLVYEVVDNSIDEALAGHCSR 66

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V+L  +G ++V DNGRGIPV  HP     S LE+++ TLHAGGKFD+STY++SGGLHG
Sbjct: 67  IAVTLHKDGSVSVEDNGRGIPVGMHP-TEGVSALELVMCTLHAGGKFDHSTYKVSGGLHG 125

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+SVVNALS      + R   I  Q +  G+  S +E   +     G+RITF PDP+IF
Sbjct: 126 VGVSVVNALSVRTVAEIKRDGKIHRQHYRHGLKESEVEVVGET-EHSGSRITFLPDPEIF 184

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   FD   +    +  A+L+  VK     ++  AE         F+F GGL+++++  
Sbjct: 185 TEITDFDYETIQTRLRELAFLNRGVKILLHDERTGAEDE-------FHFKGGLRSFVEHL 237

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLR 335
             NR+ + +E    + EK       VE    + E  N  +  Y N I T EGG+H  G R
Sbjct: 238 NRNRTPVHAEPIFIEGEKDDVQ---VEVCFQYFEGFNERLYPYVNNIYTKEGGSHVVGFR 294

Query: 336 VALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALT+ I +YA      + +   +  DD+      ++SV +  P+F GQTKTKL + + +
Sbjct: 295 AALTKCINRYASDDIIPKNLREKLSGDDVREGITCVISVRVPNPQFEGQTKTKLGNSEVK 354

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIR-KLRLPGK 452
             VE    +    YL ++P EA K+L   ++ +  R   R+ ++++RK      + L  K
Sbjct: 355 WIVEGICHEKISSYLEEHPQEARKILSKAVDAARAREAARRAKDLSRKKGSGVDVMLAAK 414

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LA+C        E+F+VEGDSAGGSAKQ R+R  QA+LPLRGKI+NV  A  ++I N+++
Sbjct: 415 LAECQSKKPEEREIFLVEGDSAGGSAKQGRDRVFQAILPLRGKIMNVEKARFDRILNSEE 474

Query: 513 IMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           I  ++ ALG     +  + + LRY K+IIMTDADVDGAHI +LLLTFFY++M  LIEQ  
Sbjct: 475 IKQVIAALGTGIGREEFDSDKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMLPLIEQGR 534

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +++  PPLFR+++G K  +  D++     L
Sbjct: 535 VYIGQPPLFRLSRGKKEQFFLDDDSLNNFL 564



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 7/106 (6%)

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           F++    +   A      +++L   +        + R+KGLGEM   QL  T M+   R 
Sbjct: 705 FQVAVKNQQHSA---ADWRELLTVIRAESFKGSSLQRYKGLGEMNPEQLWATTMNPENRI 761

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           LL+V I       +   +    LMG K + R +FIQ  A  +  + 
Sbjct: 762 LLQVRIED----AEKADEIFTTLMGDKVEPRREFIQAHALEVSSLD 803


>gi|320321691|gb|EFW77790.1| DNA gyrase subunit B [Pseudomonas syringae pv. glycinea str. B076]
          Length = 807

 Score =  507 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 226/569 (39%), Positives = 342/569 (60%), Gaps = 19/569 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S +  YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I
Sbjct: 2   SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            + +  +  +TV DNGRGIPV+ H K    S  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  SIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+I F+P    F 
Sbjct: 121 GVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDTTGTQIHFKPSADTFK 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++   
Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++           G     VE A+ W +     +  + N I   +GGTH  G R 
Sbjct: 232 TNKTPVNEVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 289 ALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPGKL
Sbjct: 349 AVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 468

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++
Sbjct: 469 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++  PPL+++ +G +  Y  D+E  ++ +
Sbjct: 529 YIAQPPLYKVKKGKQEQYIKDDEAMEEYM 557



 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             ++ L         +  I R+KGLGEM   QL ET MD + R +L+V I   +      
Sbjct: 721 EFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIG----A 776

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
               N LMG   + R  FI+  A  + ++ 
Sbjct: 777 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 806


>gi|258593678|emb|CBE70019.1| DNA gyrase subunit B [NC10 bacterium 'Dutch sediment']
          Length = 826

 Score =  507 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 230/574 (40%), Positives = 347/574 (60%), Gaps = 17/574 (2%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            S  + YDA+ IRILEGLE VR RP MYIG T    LHHL  EV+DN++DE +AGY + +
Sbjct: 21  PSQGEVYDAAQIRILEGLEAVRKRPAMYIGSTGFDGLHHLVYEVVDNSVDEALAGYCDQV 80

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V++  +  ++V+DNGRGIPV+ H +   +  +E+++TTLHAGGKFDNS Y++SGGLHGV
Sbjct: 81  DVTIHSDNSVSVLDNGRGIPVDIHEQ-TGRPAVEVVMTTLHAGGKFDNSAYKVSGGLHGV 139

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNAL+++L V + R    + Q++ RG P   LE+  K R   GTR+TF PD +IF 
Sbjct: 140 GLSVVNALAEQLEVEIWRDGKRYLQQYERGKPTGDLEEVGKARK-TGTRVTFIPDSEIFE 198

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           D+  F    L    +  A+L+  ++   + ++       I E  EFY+ GG++++++   
Sbjct: 199 DRT-FSLDTLSNRLRELAFLNKGLRIRLTDER-------INEAREFYYTGGIRSFVELLN 250

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRV 336
           EN+ ++  +    + ++  T    VE AI + +   E   S+ N I T +GGTH  G R 
Sbjct: 251 ENKVVLHPKPIHIEVQRDPT---VVEVAIQYNDGYGETVFSFANNINTHDGGTHLIGFRS 307

Query: 337 ALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA      + +   +  DD+      ++SV +  P+F GQTK +L + D + 
Sbjct: 308 ALTRTINSYAASHDLLKNLKATVTGDDIREGLTAVISVKLPNPQFEGQTKARLNNPDMKG 367

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKL 453
            VE  + +    YL +NP+   +++E   E +  R   RK +E+ R+   +    LPGKL
Sbjct: 368 LVETIVNEKLAEYLEENPVIGRRIVEKATEAARAREAARKAKELARRKGPLDGDGLPGKL 427

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADCS+      EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILN   A ++K+ ++ +I
Sbjct: 428 ADCSEKDPALCELYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNTERARADKMLSSAEI 487

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             L+ ALG     ++    LRY ++I+MTDADVDG HI +LLLTFF++ + +++E  HL+
Sbjct: 488 RVLISALGAGIDPEFDLGRLRYHRIILMTDADVDGEHIRTLLLTFFFRHLREIVEGGHLY 547

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607
           +  PPL++I +G    Y  ++   ++ L E    
Sbjct: 548 IAQPPLYKIKRGKAERYLKNDRAMEEFLLETAGE 581



 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L++     +  + I R+KGLGEM   QL +T M+   RTLLRV +   +      +  
Sbjct: 743 DLLDKSMTLARKGLTIQRYKGLGEMNPEQLWQTTMNPESRTLLRVAVEDAV----AAEQI 798

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
              LMG + + R  FI+  A    ++ 
Sbjct: 799 FTTLMGDQVEPRRLFIERHALEASNLD 825


>gi|300692061|ref|YP_003753056.1| DNA topoisomerase IV, subunit B [Ralstonia solanacearum PSI07]
 gi|299079121|emb|CBJ51788.1| DNA topoisomerase IV, subunit B [Ralstonia solanacearum PSI07]
          Length = 661

 Score =  507 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 252/673 (37%), Positives = 359/673 (53%), Gaps = 45/673 (6%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           S +  Y  +SI++L+GLEPV+ RPGMY   T      H+  EVIDNA DE + GY  LI+
Sbjct: 2   SKTPQYSEASIKVLKGLEPVKQRPGMY---TRTDNPLHIVQEVIDNAADEALGGYGKLIQ 58

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLH 155
           V+L  +G ++V D  RGIPV  HP+      +EI+ T LHAGGKFD      Y  SGGLH
Sbjct: 59  VTLHKDGSVSVEDEARGIPVGIHPE-EGVPVVEIVFTRLHAGGKFDKGRGGAYAFSGGLH 117

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--LEKKEKVRNKRGTRITFRPDP 213
           GVG+SV NALS  L VTV R   + +  FS G  +      + E+   K GTR+   PD 
Sbjct: 118 GVGVSVTNALSTRLEVTVWRDGGVSTLTFSGGDVIETLATRRAERGEKKNGTRVRVWPDG 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F  +     A L ++ +SKA L   VK   + +K         E  E+ +  GL+ YL
Sbjct: 178 KYFDSEN-IPQAELQRLLRSKAVLLPGVKVSLTIEKS-------GETLEWQYEQGLRGYL 229

Query: 274 QTKLENRSLISSEIFTGK----------TEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
              L   S     I   +           E+         W +AW EE  P   SY N I
Sbjct: 230 IESLAQGSGADPVIPLFEGEHFADPDKLGEEGFAFGEGASWVVAWTEEGAPVRESYVNLI 289

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAG 381
            T  GGTHESGLR  L + +K + E+     + + ++S+D+   A  +LS  + +P+F G
Sbjct: 290 PTPAGGTHESGLREGLFQAVKSFVEMHALCPKGVKLMSEDVFARASFVLSAKVLDPQFQG 349

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           Q K +L S DA R V    R   + +L Q+     +L E VI +++ R R  ++ E  + 
Sbjct: 350 QIKERLNSRDAVRLVSTFSRPALELWLNQHVEHGKRLAELVIRQAQARTRAAQKVEKKKG 409

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +  L  PGKL DC  +     ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN   
Sbjct: 410 SGVAVL--PGKLTDCESDDVSRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTWE 467

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTF 558
              +++  N ++ D+  A+G          D   LRY K+ I++DADVDGAHI  LLLT 
Sbjct: 468 TERDRLFANNEVHDIAVAIGVDPHGPNDSVDLSGLRYGKICILSDADVDGAHIQVLLLTL 527

Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KG 610
           F++    LI + ++ +  PPL+R+    +G K    +YA D+   + I ++ +K G  +G
Sbjct: 528 FFKHFPQLIGRGNVCVARPPLYRVDAPARGKKPAQKLYALDDGELEAIEDKLRKDGLKEG 587

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669
             +ISRFKGLGEM A QL ET M+ + R LL V I +     + T   +N LMG  +A  
Sbjct: 588 SWQISRFKGLGEMSAEQLWETTMNPDTRRLLPVSIGEPG--PEQTVHVMNMLMGKGEAGA 645

Query: 670 RFKFIQERASFID 682
           R  +++ R + ++
Sbjct: 646 RRTWLEARGNEVE 658


>gi|257485596|ref|ZP_05639637.1| DNA gyrase subunit B [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 805

 Score =  507 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 226/569 (39%), Positives = 342/569 (60%), Gaps = 19/569 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S +  YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I
Sbjct: 2   SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            + +  +  +TV DNGRGIPV+ H K    S  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  SIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+I F+P    F 
Sbjct: 121 GVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDTTGTQIHFKPSADTFK 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++   
Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++           G     VE A+ W +     +  + N I   +GGTH  G R 
Sbjct: 232 TNKTPVNEVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 289 ALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPGKL
Sbjct: 349 AVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 468

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++
Sbjct: 469 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++  PPL+++ +G +  Y  D+E  ++ +
Sbjct: 529 YIAQPPLYKVKKGKQEQYIKDDEAMEEYM 557



 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             ++ L         +  I R+KGLGEM   QL ET MD + R +L+V I   +      
Sbjct: 719 EFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIG----A 774

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
               N LMG   + R  FI+  A  + ++ 
Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804


>gi|330987022|gb|EGH85125.1| DNA gyrase subunit B [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 805

 Score =  507 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 226/569 (39%), Positives = 342/569 (60%), Gaps = 19/569 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S +  YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I
Sbjct: 2   SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            + +  +  +TV DNGRGIPV+ H K    S  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  SIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+I F+P    F 
Sbjct: 121 GVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQKPMKIVGE-SDTTGTQIHFKPSADTFK 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++   
Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++           G     VE A+ W +     +  + N I   +GGTH  G R 
Sbjct: 232 TNKTPVNEVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 289 ALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPGKL
Sbjct: 349 AVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 468

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++
Sbjct: 469 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++  PPL+++ +G +  Y  D+E  ++ +
Sbjct: 529 YIAQPPLYKVKKGKQEQYIKDDEAMEEYM 557



 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             ++ L         +  I R+KGLGEM   QL ET MD + R +L+V I   +      
Sbjct: 719 EFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIG----A 774

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
               N LMG   + R  FI+  A  + ++ 
Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804


>gi|225874303|ref|YP_002755762.1| DNA gyrase, B subunit [Acidobacterium capsulatum ATCC 51196]
 gi|225791292|gb|ACO31382.1| DNA gyrase, B subunit [Acidobacterium capsulatum ATCC 51196]
          Length = 870

 Score =  507 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 223/593 (37%), Positives = 349/593 (58%), Gaps = 13/593 (2%)

Query: 23  LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82
             K       P  ++Q+    Y + +I++LEGLE VR+RP MYIG T E  LHHL  EV+
Sbjct: 2   STKELAPDTQPLPSSQAQKTTYTSDNIKVLEGLEAVRLRPAMYIGSTGEMGLHHLVYEVV 61

Query: 83  DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN--HPKFPNKSTLEIILTTLHAG 140
           DN++DE +AGYA  IEV++  +  +TVVD+GRGIPV+            ++++LT LHAG
Sbjct: 62  DNSVDEALAGYATRIEVTIHVDNSITVVDDGRGIPVDEKTLDNGEKMPAVQVVLTKLHAG 121

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD+STY++SGGLHGVG+S VNALS+E  V + R    + Q ++RGIP+S L +     
Sbjct: 122 GKFDSSTYKVSGGLHGVGVSCVNALSEEFDVEIWRDGHTWEQDYARGIPISKLRQAG-TS 180

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
            KRGT++ F PD  IF     ++   L +  +  A+L+  ++     ++    K G P++
Sbjct: 181 KKRGTKVHFLPDKSIFTV-TEYNYDTLAQRLRELAFLNKGLEIVLVDERTADPKTGQPKR 239

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
            +F + GG+  +++   + + ++  +    +  +       +E A+ + +     +  + 
Sbjct: 240 NDFKYAGGIAEFIKHINKGKQILHDKPIVMEGLRDNV---DMEIALQYNDSYSETVFCFA 296

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREP 377
           N I T +GGTH SG + ALTR I    +     + +  ++  DD+    V ++SV + +P
Sbjct: 297 NNINTADGGTHLSGFKTALTRTINSAGQQLGLFKDVKENLSGDDVREGLVAVISVKLPQP 356

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F GQTK KL + D   TV+  + +    +L QNP  A +++   IE +  R   RK R+
Sbjct: 357 QFEGQTKGKL-NSDIAGTVQALVNEKLGMFLEQNPPVAKRIINKAIEAARAREAARKARD 415

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              RK A+    LPGKLADCS+      EL++VEG+SAGG+AKQ R+R  QA+LPL+GKI
Sbjct: 416 LTRRKGALDGGGLPGKLADCSERQPDRCELYLVEGESAGGTAKQGRDRRFQAILPLKGKI 475

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDADVDGAHIASLL 555
           LNV  A  +K+  +++I  ++ ALGC    +  +   LRY ++I+MTDADVDG+HI +LL
Sbjct: 476 LNVEKARYDKMLGHEEIRAMITALGCGIGKEDFDPAKLRYGRIILMTDADVDGSHIRTLL 535

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           LTFF++ M +LI++ H+++  PPLF+I +G    Y  DE    +++ +    G
Sbjct: 536 LTFFFRHMTELIKRGHVYIAQPPLFKIKKGKFEQYIKDEREFVRVMVKRASDG 588



 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 4/88 (4%)

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           Q++ +   + GK   ++ R+KGLGEM +SQL ET MD  +RTLL V++      + +T+ 
Sbjct: 786 QELFDYVVEQGKRDYQVQRYKGLGEMTSSQLWETTMDPERRTLLSVKLED----IAETET 841

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
               LMG   + R KFI++ A  + ++ 
Sbjct: 842 IFTTLMGEDVEARRKFIEDNALDVKNLD 869


>gi|171059316|ref|YP_001791665.1| DNA topoisomerase IV subunit B [Leptothrix cholodnii SP-6]
 gi|170776761|gb|ACB34900.1| DNA topoisomerase (ATP-hydrolyzing) [Leptothrix cholodnii SP-6]
          Length = 658

 Score =  507 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 252/670 (37%), Positives = 358/670 (53%), Gaps = 39/670 (5%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            +    ++ Y  +SIR+L+GLEPV+ RPGMY   T      H+  E IDNA DE +AGY 
Sbjct: 1   MSTPKPNNAYAEASIRVLKGLEPVKQRPGMY---TRTDTPLHIVQEAIDNAADEALAGYG 57

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST---YEIS 151
             I V+L  +G ++V D+GRGIP   HP+      +EI+ T LHAGGKFD  +   Y  S
Sbjct: 58  KSIAVTLHADGSVSVEDDGRGIPFGLHPE-EQVPVVEIVFTRLHAGGKFDKGSGGAYSFS 116

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR--GTRITF 209
           GGLHGVG+SV NAL+  L V V+R   + +  F+ G  + PL  +      R  GT +  
Sbjct: 117 GGLHGVGVSVTNALATRLQVQVSRDKKVATLAFAGGDVIEPLVVRPIASGDRRQGTSVRV 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PDPK F   A      L+ + +SKA L   V      +K         + + + + GGL
Sbjct: 177 WPDPKYFES-AELPRGELMHLLRSKAVLMPGVTVTLRNEK-------TGDVQTWLYKGGL 228

Query: 270 KTYLQTKLENRSLIS---SEIFTGKTEKKGTHRGT-VEWAIAWCEEN-PEITSYCNTILT 324
           + YL   L    LI     E +    E +    G    W +A+ EE      SY N I T
Sbjct: 229 RDYLMQNLNAEPLIPLFEGEQYASAGETENFAEGEGAAWCVAFIEEGVNLRESYVNLIPT 288

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQT 383
             GGTHE+GL+  L + +K + EL     + + ++ DD+   A  +LS  + +P+F GQT
Sbjct: 289 VAGGTHEAGLKDGLFQAVKGFVELHALCPKGVKLMPDDVFGRASFVLSAKVLDPQFQGQT 348

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443
           K +L S DA R V   +R   + +L Q+     KL E VI +++ R +  ++ E  + + 
Sbjct: 349 KERLNSRDALRLVTAFVRPALELWLNQHVEHGKKLAELVIRQAQARQKAGQKVEKKKGSG 408

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +  L  PGKL DC        E+F+VEGDSAGGSAK  RN+  QA+LPLRGK+LN     
Sbjct: 409 VAVL--PGKLTDCESRDLSLNEVFLVEGDSAGGSAKMGRNKETQAILPLRGKVLNAWEVE 466

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFY 560
            +++  N +I D+  A+G          D   LRY K+ I++DADVDG+HI  LLLT F+
Sbjct: 467 RDRLFANNEIHDIAVAVGVDPHGANDSPDLSGLRYGKICILSDADVDGSHIQVLLLTLFF 526

Query: 561 QEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKI 612
           +    LIE  ++++  PPLFR+    +G K    +YA D+   Q IL++ +K G  +G  
Sbjct: 527 RHFPKLIENGNIYIAKPPLFRVDAPARGKKPAAKMYALDDGELQAILDKLRKEGAREGSW 586

Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERF 671
            ISRFKGLGEM A QL ET ++ + R LLRVE          T DS+ KLMG  +A  R 
Sbjct: 587 SISRFKGLGEMSAEQLWETTLNPDTRRLLRVEY--GRLDFAATVDSLTKLMGKGEAASRR 644

Query: 672 KFIQERASFI 681
           + ++     +
Sbjct: 645 ELMELHGDSV 654


>gi|239993753|ref|ZP_04714277.1| DNA gyrase subunit B [Alteromonas macleodii ATCC 27126]
          Length = 806

 Score =  507 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 230/576 (39%), Positives = 347/576 (60%), Gaps = 18/576 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           SA +NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I
Sbjct: 2   SAENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSEI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V +  +G ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  TVLIHSDGSVSVSDDGRGIPTELHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS  L + + R      Q++  G+P +PL       +K GT I F P    F 
Sbjct: 121 GVSVVNALSSRLKLRIRRGGKAHEQEYHHGVPQAPLAVTGDT-DKTGTMIRFWPSSDTFT 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           D   +    L K  +  ++L+  V      +++  E       + F + GG+K +++   
Sbjct: 180 DTL-YHYDILAKRLRELSFLNSGVSIRLKDERDGKE-------DHFMYEGGIKAFVEYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           E ++ +  ++F   +E++      VE A+ W +     +  + N I   +GGTH +G R 
Sbjct: 232 EKKTPVHQKVFHFSSEQED--GIAVEVAMQWNDSFQENVFCFTNNIPQRDGGTHLAGFRG 289

Query: 337 ALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K   +   DD       ++SV + +P+F+ QTK KLVS + + 
Sbjct: 290 ALTRTLNNYMEKEGLNKKAKTNASGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVRP 349

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE+A+ +    +L++NP E+  +   +I+ +  R   RK R    RK A+    LPGKL
Sbjct: 350 AVESAMNEKLAEFLLENPAESKIIAGKIIDAARAREAARKAREMTRRKGALDLAGLPGKL 409

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 410 ADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 469

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC   R +Y  E LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE+ ++
Sbjct: 470 ATLITALGCGIGRDEYDPEKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYV 529

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++  PPL+++ +G +  Y  D++     L      G
Sbjct: 530 YIAQPPLYKVKKGKQEQYLKDDDALTNYLTSIAIDG 565



 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 4/91 (4%)

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
           E  ++ LE      K    I R+KGLGEM   QL ET MD   R +L+V I   +     
Sbjct: 719 ESFKEALEWLMNEAKRGQYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIEDAIGC--- 775

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
                  LMG + + R +FI+  A  ++++ 
Sbjct: 776 -DQLFTTLMGDQVEPRREFIEANALKVENLD 805


>gi|71735115|ref|YP_272319.1| DNA gyrase subunit B [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71555668|gb|AAZ34879.1| DNA gyrase, B subunit [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320331107|gb|EFW87078.1| DNA gyrase subunit B [Pseudomonas syringae pv. glycinea str. race
           4]
 gi|330881905|gb|EGH16054.1| DNA gyrase subunit B [Pseudomonas syringae pv. glycinea str. race
           4]
          Length = 805

 Score =  507 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 226/569 (39%), Positives = 342/569 (60%), Gaps = 19/569 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S +  YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I
Sbjct: 2   SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            + +  +  +TV DNGRGIPV+ H K    S  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  SIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+I F+P    F 
Sbjct: 121 GVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDTTGTQIHFKPSADTFK 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++   
Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++           G     VE A+ W +     +  + N I   +GGTH  G R 
Sbjct: 232 TNKTPVNEVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 289 ALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPGKL
Sbjct: 349 AVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 468

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++
Sbjct: 469 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++  PPL+++ +G +  Y  D+E  ++ +
Sbjct: 529 YIAQPPLYKVKKGKQEQYIKDDEAMEEYM 557



 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             ++ L         +  I R+KGLGEM   QL ET MD + R +L+V I   +      
Sbjct: 719 EFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIG----A 774

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
               N LMG   + R  FI+  A  + ++ 
Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804


>gi|237801661|ref|ZP_04590122.1| DNA gyrase subunit B [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331024520|gb|EGI04576.1| DNA gyrase subunit B [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 805

 Score =  507 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 226/569 (39%), Positives = 342/569 (60%), Gaps = 19/569 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S +  YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I
Sbjct: 2   SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            + +  +  +TV DNGRGIPV+ H K    S  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  SIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+I F+P    F 
Sbjct: 121 GVSVVNALSELLLLTVRRSGKIWEQTYIHGVPQEPMKIVGE-SDSTGTQIHFKPSADTFK 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++   
Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++           G     VE A+ W +     +  + N I   +GGTH  G R 
Sbjct: 232 TNKTPVNEVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 289 ALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPGKL
Sbjct: 349 AVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 468

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++
Sbjct: 469 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++  PPL+++ +G +  Y  D+E  ++ +
Sbjct: 529 YIAQPPLYKVKKGKQEQYIKDDEAMEEYM 557



 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 4/91 (4%)

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
              ++ L         +  I R+KGLGEM   QL ET MD + R +L+V I   +     
Sbjct: 718 NEFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIG---- 773

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
                N LMG   + R  FI+  A  + ++ 
Sbjct: 774 ADQIFNTLMGDAVEPRRDFIESNALAVSNLD 804


>gi|89092267|ref|ZP_01165221.1| DNA gyrase subunit B [Oceanospirillum sp. MED92]
 gi|89083355|gb|EAR62573.1| DNA gyrase subunit B [Oceanospirillum sp. MED92]
          Length = 808

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 228/578 (39%), Positives = 341/578 (58%), Gaps = 18/578 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           +   + +YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ +
Sbjct: 2   SGEDNQDYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCS 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I+V +  +  +TV+DNGRGIP + HP+    S  E+I+T LHAGGKFD+++Y++SGGLH
Sbjct: 62  EIKVIIHPDESITVMDNGRGIPTDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS +L +T+ R   +  Q +  G P +PL    +     GT + F P  + 
Sbjct: 121 GVGVSVVNALSVKLKMTIRRNGQVHEQVYRHGEPEAPLSVVGET-ETSGTMVRFWPSEET 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   F    L K  +  ++L+  V+     ++   E       E F + GGL  +++ 
Sbjct: 180 FSNV-SFKFDILAKRLRELSFLNSGVRIVLKDERTAVE-------EVFEYEGGLGAFVEY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              N++ ++       T +       VE A+ W +     I S+ N I   +GGTH SG 
Sbjct: 232 LNTNKTTVNKLFHF--TAEHEASGVAVEVAMQWNDSFQESIHSFTNNIPQRDGGTHLSGF 289

Query: 335 RVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y E     +   IS   DD       I+SV + +P+F+ QTK KLVS + 
Sbjct: 290 RAALTRSLNNYIESESLNKGGKISTTGDDSREGLTAIISVKVPDPKFSSQTKDKLVSSEV 349

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451
           +  VE  + +    YL +NP EA  ++  +I+ +  R   RK R    RK A+    LPG
Sbjct: 350 KSAVEQTMGERLAEYLQENPQEAKAVVSKMIDAARAREAARKAREMTRRKGALDIAGLPG 409

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +E+++VEGDSAGGSAKQ R R  QA+LPL+GKILNV  A  +K+ ++ 
Sbjct: 410 KLADCQEKDPALSEIYLVEGDSAGGSAKQGRARKTQAILPLKGKILNVEKARFDKMLSSA 469

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF+++M +LIE+ 
Sbjct: 470 EVGTLITALGCGIGREEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFFRQMPELIERG 529

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++++  PPL++I +G +  Y  D+E     L +    G
Sbjct: 530 YVYIAQPPLYKIKKGKQEQYLKDDEALDSYLLQGALDG 567



 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G ++    D E     L +  + G     I R+KGLGEM   QL ET MD + R +L
Sbjct: 711 LQRGERTKEVTDFEEGLNWLLDLSRRGHY---IQRYKGLGEMNPEQLWETTMDPDSRRML 767

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R  FI+  A  + ++ 
Sbjct: 768 QVTIEDAI----AADQLFTTLMGDEVEPRRNFIESNALQVANLD 807


>gi|300112751|ref|YP_003759326.1| DNA gyrase subunit B [Nitrosococcus watsonii C-113]
 gi|299538688|gb|ADJ27005.1| DNA gyrase, B subunit [Nitrosococcus watsonii C-113]
          Length = 807

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 228/581 (39%), Positives = 348/581 (59%), Gaps = 19/581 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
            AS  YD+S I++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I
Sbjct: 2   KASTAYDSSHIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGFCDEI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V +  +  +T+ DNGRGIP + H +   +S  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  AVIVHSDDSITISDNGRGIPTDIHQE-EGRSAAEVIMTVLHAGGKFDHNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           GISVVNALS  L + + R   ++ Q +  G+P  PL        + GT I F P PKIF 
Sbjct: 121 GISVVNALSAALFLEIHRDGKVYQQHYREGVPQEPLVAIGAT-ERSGTTIRFSPSPKIFS 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F      K  +  A+L+ +V+     ++       I  KEEF++ GG+  +++   
Sbjct: 180 NIV-FSFDIFAKRLRELAFLNSKVRILLEDER-------IGRKEEFFYEGGISAFVEHLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           +N++ +   +F  + E+ G     VE A+ W +        + N I   +GGTH +G R 
Sbjct: 232 KNKTPLHGNVFYFQGERDGV---AVELAMQWNDSYQEHFFCFTNNIPQRDGGTHLAGFRS 288

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR + +Y E      K  +    DD       +LS+  ++P+F+ QTK KLVS + + 
Sbjct: 289 ALTRTLNQYIEKEGLTKKTKVGTSGDDAREGLTAVLSIKAQDPKFSSQTKEKLVSSEVKP 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            V++ + + F ++L+++P++A  +   +IE +  R   RK RE   RK A+    LPGKL
Sbjct: 349 VVDSLVSEHFQNFLLEHPVDAKAIGGKMIEAARAREAARKARELTRRKGALDMAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +ELF+VEGDSAGGSAKQ R+R NQA+LPL+GKILNV  A  +K+ ++ ++
Sbjct: 409 ADCQERDPTLSELFLVEGDSAGGSAKQGRDRRNQAILPLKGKILNVEKARFDKMLSSVEV 468

Query: 514 MDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC    +    D LRY ++IIMTDADVDG+HI +LLLTFFY++M +L+E+ H+
Sbjct: 469 ATLITALGCGIGREEYNPDRLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELVERGHI 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613
           ++  PPL+++ +G +  Y  D+   ++ L            
Sbjct: 529 YIAQPPLYKVKRGKQEQYIRDDAEMERYLINLSTDNAKIYS 569



 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G +    +D +     +       +    + R+KGLGEM   QL ET M+   R L 
Sbjct: 710 VQRGDRQQLVNDIQE---AINWLMGEARRGQAVQRYKGLGEMNPDQLWETTMNPATRRLS 766

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I+  +       +    LMG   + R  FI+  A  +  + 
Sbjct: 767 QVRIDDVI----AADEIFTTLMGDHVEPRRDFIESNALNVAHLD 806


>gi|297537200|ref|YP_003672969.1| DNA gyrase subunit B [Methylotenera sp. 301]
 gi|297256547|gb|ADI28392.1| DNA gyrase, B subunit [Methylotenera sp. 301]
          Length = 809

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 226/573 (39%), Positives = 339/573 (59%), Gaps = 21/573 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANL 96
           +  S +YD+SSI+ILEGL+ VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ + 
Sbjct: 9   KPVSPDYDSSSIKILEGLDAVRKRPGMYIGDTSDGSGLHHMVFEVLDNAIDEALAGHCDD 68

Query: 97  IEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           I+V++  +  ++V DNGRGIP +        P +S  EI++T LHAGGKFD ++Y++SGG
Sbjct: 69  IKVTIHSDNSISVSDNGRGIPTDIKDDDKHEPKRSAAEIVMTELHAGGKFDQNSYKVSGG 128

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALSD L + + RQ  +   +F RG+ +SPL +       RGT + F    
Sbjct: 129 LHGVGVSVVNALSDWLRLKIYRQGKVHQMEFQRGVAVSPLVQTGTTEK-RGTEVHFLASV 187

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           + F     +    L K  +  ++L+  VK      +         + E F + GG+K ++
Sbjct: 188 ETFVLV-EYHFEILAKRIRELSFLNNGVKIELVDQR-------TGKSENFAYSGGIKGFV 239

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +     ++++  + F    EK G    T+E A+ W +     +  + N I   +GGTH +
Sbjct: 240 EYMNRTKTVLHPKTFYAMGEKDG---MTIEVAMQWNDSYSETVQCFTNNIPQRDGGTHLT 296

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           GLR A+TR + +Y E +    K  +    DD+      +LSV + +P+F+ QTK KLVS 
Sbjct: 297 GLRTAMTRTLNQYIEQSDIAKKAKVETTGDDMREGICCVLSVKVPDPKFSSQTKDKLVSS 356

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRL 449
           + Q  V   +      +L +NP +A  ++  V++ +  R   RK RE+ R+   +  + L
Sbjct: 357 EVQPVVSEVVSAKLAEFLAENPADAKIIVGKVVDAARAREAARKAREITRRKGVMDTMGL 416

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +      E+++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+  
Sbjct: 417 PGKLADCQERDPAKCEIYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKLLG 476

Query: 510 NQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q+I  L+ ALG          E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E
Sbjct: 477 SQEIATLITALGTSIGKADFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMTELVE 536

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           + H+++  PPL+++ QG    Y  D++   + L
Sbjct: 537 RGHIYIAQPPLYKVKQGKDERYLKDQQELDQYL 569



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G K          ++ L+   +  K  + I R+KGLGEM  SQL ET MD   R LL
Sbjct: 712 IKRGEKEQ---TITTFKQALDWLLEEAKHNLNIQRYKGLGEMNPSQLWETTMDPTVRRLL 768

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V+I+  +       +    LMG + + R  FI+  A  + ++ 
Sbjct: 769 KVQIDDAI----AADEIFTTLMGDQVEPRRAFIESNALGVGNLD 808


>gi|126724511|ref|ZP_01740354.1| DNA gyrase subunit B [Rhodobacterales bacterium HTCC2150]
 gi|126705675|gb|EBA04765.1| DNA gyrase subunit B [Rhodobacterales bacterium HTCC2150]
          Length = 805

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 223/571 (39%), Positives = 332/571 (58%), Gaps = 16/571 (2%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           N+   ++Y A SI++L+GLE VR RPGMYIG TD+   LHH+  E +DN +DE +AG+A+
Sbjct: 4   NEQNQEDYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYECVDNGIDEALAGHAD 63

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            + V++  +  ++V DNGRGIPV  H +    S  E+I+T LHAGGKFD+++Y++SGGLH
Sbjct: 64  FVNVTIHDDNSISVRDNGRGIPVGIHEE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGGLH 122

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS  L + + R       KF+ G     L        ++GT + F    + 
Sbjct: 123 GVGVSVVNALSVWLELRIWRDGKEHYAKFAHGDTAEHLRVVGDANGQKGTEVRFLASTET 182

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   +    L    +  A+L+  V+     ++          K E ++ GG+K +++ 
Sbjct: 183 FSNL-EYSFKTLENRLRELAFLNSGVRIILKDER-----PAEHLKSELFYEGGVKEFVKY 236

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
              ++S +  E    + EK       +E A+ W +   E    + N I   +GGTH +G 
Sbjct: 237 LDRSKSSMLEEPIFVRGEKDDI---GIEVAMWWNDSYHENVLPFTNNIPQRDGGTHMAGF 293

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR I  YA+ +    K  ++   DD       +LSV + +P+F+ QTK KLVS + 
Sbjct: 294 RGALTRTINSYAQSSGIAKKEKVAFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEV 353

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
           +  VE+ + +    +  +NP  A  ++  ++E +  R   RK RE   RKTA+    L G
Sbjct: 354 RPAVESLMNEKLSEWFEENPQLAKMIVGKIVEAALAREAARKARELTRRKTALDVNFLAG 413

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL DCS+     TE+F+VEGDSAGGSA+  R+R  QAVLPLRGKILNV  A  +++  +Q
Sbjct: 414 KLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRLTQAVLPLRGKILNVERARFDRMLGSQ 473

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           +I +LV ALG    R ++  E LRY K++IMTDADVDGAHI +LLLTFF+++M +LIE  
Sbjct: 474 EIGNLVMALGTGIGRDEFNIEKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQMPELIEGG 533

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +L++  PPLF++++G   VY  D+      L
Sbjct: 534 YLYIAQPPLFKVSRGKSEVYLKDQPALDDYL 564



 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L      G+  + + R+KGLGEM   QL ET +D + RTLL+V+I+   ++       
Sbjct: 722 SLLAAILTEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVKIDDLADADDI---- 777

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R +FIQ  A  ++++ 
Sbjct: 778 FTKLMGDVVEPRREFIQNNALSVENLD 804


>gi|289628211|ref|ZP_06461165.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289649101|ref|ZP_06480444.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330870078|gb|EGH04787.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 805

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 226/569 (39%), Positives = 342/569 (60%), Gaps = 19/569 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S +  YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I
Sbjct: 2   SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            + +  +  +TV DNGRGIPV+ H K    S  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  SIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+I F+P    F 
Sbjct: 121 GVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDTTGTQIHFKPSADTFK 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++   
Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++           G     VE A+ W +     +  + N I   +GGTH  G R 
Sbjct: 232 TNKTPVNQVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 289 ALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPGKL
Sbjct: 349 AVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 468

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++
Sbjct: 469 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++  PPL+++ +G +  Y  D+E  ++ +
Sbjct: 529 YIAQPPLYKVKKGKQEQYIKDDEAMEEYM 557



 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             ++ L         +  I R+KGLGEM   QL ET MD + R +L+V I   +      
Sbjct: 719 EFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIG----A 774

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
               N LMG   + R  FI+  A  + ++ 
Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804


>gi|289549166|ref|YP_003474154.1| DNA gyrase subunit beta [Thermocrinis albus DSM 14484]
 gi|289182783|gb|ADC90027.1| DNA gyrase, B subunit [Thermocrinis albus DSM 14484]
          Length = 791

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 218/572 (38%), Positives = 330/572 (57%), Gaps = 18/572 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + Y A  I+ + GL+ VR+RP MYIG   E+ LHHL  E++DNA+DE +AGYA+ I V++
Sbjct: 9   EEYQAQDIKAVTGLQHVRLRPSMYIGDVGERGLHHLIWEILDNAVDEHMAGYASHITVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  ++V D+GRGIPV+ HP+      ++++ T L AGGKFD   Y  SGGLHGVG SV
Sbjct: 69  HADMSVSVEDDGRGIPVDIHPE-TGIPAVQMVFTVLGAGGKFDKKVYRYSGGLHGVGASV 127

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+ L V V R   I+ Q++ RG P +P++   K R  RGT++TF+PDP+IF     
Sbjct: 128 VNALSEWLVVEVYRDGNIYRQEYVRGEPTTPVQIVGKTRK-RGTKVTFKPDPEIFETT-K 185

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
                + K  +  AYL+         ++         +   + F  G++  +      + 
Sbjct: 186 IKFDIVEKRIRELAYLNPNCTFRLVDER-------TGKDLIYRFEKGIEELVLYLARGKE 238

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            +  E+     E +G     V+ A  + ++    + S+ N I T EGGTH +G R  LT+
Sbjct: 239 PLIKEVIRVGGEHEGVI---VDIAFTYTKDYKEVVESFVNNIKTLEGGTHVTGFRSGLTK 295

Query: 341 GIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            + +     + ++ +      +DL    V ++S  + +P+F GQTKTKL + + +  VE+
Sbjct: 296 AVMRLLPNIKLQKELKETITGEDLREGLVAVVSCKVPDPQFEGQTKTKLGNQNVKSIVES 355

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            + +    Y  +N      ++E  IE +  R   +K +E V R++ +    LPGKLADCS
Sbjct: 356 VVYEQLSSYFDKNRDVLRVIVEKAIEAALAREAAKKAKELVRRRSPLEDTTLPGKLADCS 415

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           +      ELFIVEG+SAGGSAKQ R+R  QA+LPLRGKILNV  A  +K+ +N++I  +V
Sbjct: 416 EKDPEKCELFIVEGESAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKVLSNEEIKAIV 475

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ++GC          LRY ++I+MTDADVDG+HI +LLLTFFY+ M  L+E  +L++  P
Sbjct: 476 SSIGCGIGEDMDLSKLRYHRIILMTDADVDGSHIRTLLLTFFYRYMPKLVEGGYLYIAQP 535

Query: 578 PLFRITQGTKSVYAHDEEHKQKIL-EEFKKHG 608
           PL+R  +G   VY  D+   +++L E+ KK G
Sbjct: 536 PLYRAKKGKTVVYLKDDRELEQLLMEDIKKEG 567



 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 8/109 (7%)

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL  +  G +       E    +  +     K   EI R+KGLGEM   QL ET M+  
Sbjct: 690 PPL-TVGVGKRE---KTLEDLFSLYRDILDLAKENWEIQRYKGLGEMNPEQLWETTMNPA 745

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            R LLRV I        +     + LMG + + R +FI+  A  + ++ 
Sbjct: 746 TRRLLRVTIED----AAEADRIFSILMGEEVEPRREFIEAYAREVRNLD 790


>gi|330500918|ref|YP_004377787.1| DNA gyrase subunit B [Pseudomonas mendocina NK-01]
 gi|328915204|gb|AEB56035.1| DNA gyrase subunit B [Pseudomonas mendocina NK-01]
          Length = 806

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 232/570 (40%), Positives = 348/570 (61%), Gaps = 20/570 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S +  YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGY + I
Sbjct: 2   SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGYCSEI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            +++  +  ++V DNGRGIPV+ H K    S  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  TITIHPDESISVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS EL +T+ R   I+ Q +  G+P +PL       +  GT+I F+P  + F 
Sbjct: 121 GVSVVNALSKELVLTIRRSGKIWEQTYVHGVPQAPLTAVGDT-DGTGTQIHFKPSEETFA 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++         ++E F + GGLK +++   
Sbjct: 180 NIH-FSWDILAKRLRELSFLNSGVGILLRDER-------TGKEELFKYEGGLKAFVEFLN 231

Query: 278 ENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            N+++++       + E+ G     VE A+ W +     I  + N I   +GGTH +G R
Sbjct: 232 TNKTVVNQVFHFNIQREEDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFR 288

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR +  Y E      K  IS   DD       I+SV + +P+F+ QTK KLVS + +
Sbjct: 289 SALTRHLNNYIEQEGLAKKFKISTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVK 348

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGK 452
             VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPGK
Sbjct: 349 TAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGK 408

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +     +EL+IVEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q+
Sbjct: 409 LADCQEKDPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMLSSQE 468

Query: 513 IMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF++++ +LIE+ +
Sbjct: 469 VGTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGY 528

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +++  PPL+++ +G +  Y  D+E   + +
Sbjct: 529 VYIAQPPLYKVKKGKQEQYIKDDEAMDEYM 558



 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+        +  I R+KGLGEM   QL ET MD   R +L+V I   +       
Sbjct: 721 FKEALDWLMNESTKRHSIQRYKGLGEMNPDQLWETTMDPEVRRMLKVTIEDAI----AAD 776

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
              N LMG   + R  FI+  A  + ++ 
Sbjct: 777 QIFNTLMGDAVEPRRDFIESNALAVSNLD 805


>gi|299530844|ref|ZP_07044259.1| DNA topoisomerase IV subunit B [Comamonas testosteroni S44]
 gi|298721360|gb|EFI62302.1| DNA topoisomerase IV subunit B [Comamonas testosteroni S44]
          Length = 656

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 238/666 (35%), Positives = 345/666 (51%), Gaps = 38/666 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
             S+ Y   SIR+L+GLEPV+ RPGMY   T      H+  EVIDNA DE +AGY   I+
Sbjct: 4   KPSNEYSEGSIRVLKGLEPVKQRPGMY---TRTDNPLHILQEVIDNAADEALAGYGKKIK 60

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST---YEISGGLH 155
            ++  +G  +V D+GRGIP   HP+      +E++ T LHAGGKFD      Y  SGGLH
Sbjct: 61  FTMHADGSYSVEDDGRGIPFGLHPE-EKAPVVELVFTRLHAGGKFDKGNGGAYSFSGGLH 119

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDP 213
           GVG+SV NAL+  L V V R   + +  FS G  + PL+ +       K+GT +   PD 
Sbjct: 120 GVGVSVTNALATRLEVQVHRDGQVATLVFSGGDVIEPLKVRPLQAGERKQGTTVRAWPDA 179

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F   +      L+ + +SKA L   V      +K           + + F GGL+ YL
Sbjct: 180 KYFES-SALPMGELVHLLRSKAVLMPGVAVSLINEKSRD-------TQSWQFKGGLRDYL 231

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW----CEENPEITSYCNTILTDEGGT 329
              L    +I      G  +K        E A        +  P   SY N I T  GGT
Sbjct: 232 AQSLHGEPVIPLFEGEGFADKNNDSFAEGEGAAWCVAFTEDGAPLRESYVNLIPTTAGGT 291

Query: 330 HESGLRVALTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           H+SGLR  L + +K + ++     + + ++ DD+   A  +L+  + +P+F GQ K +L 
Sbjct: 292 HDSGLRDGLFQAVKAFIDMHSLLPKGVKLMPDDVFARASYVLNAKVLDPQFQGQIKERLN 351

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR 448
           S DA R V   +R   + +L ++     KL E  I+ ++ R +  ++ E  + + +  L 
Sbjct: 352 SRDAVRLVSGFVRPALELWLNEHVDWGKKLAEIAIKAAQTRQKAGQKVEKRKGSGVAVL- 410

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
            PGKL DC        E+F+VEGDSAGGSAK  R++  QA+LPLRGK+LN      +++ 
Sbjct: 411 -PGKLTDCESKDIAVNEVFLVEGDSAGGSAKMGRDKETQAILPLRGKVLNTWEVDRDRLF 469

Query: 509 NNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
            N +I D+  A+G        E D   LRY K+ I++DADVDG+HI  LLLT F++    
Sbjct: 470 ANNEIHDISVAIGVDPHGPNDEPDLSGLRYGKICILSDADVDGSHIQVLLLTLFFKHFPK 529

Query: 566 LIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKIEISRF 617
           LIE  H+ +  PPLFR+    +G K    VYA D      I+E+  K G  + K ++SRF
Sbjct: 530 LIEAGHIHVALPPLFRVDVPARGKKPAIKVYALDAGELDAIIEKCAKDGVPREKCQVSRF 589

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQE 676
           KGLGEM A QL ET ++ + R LL V+          ++  + KLMG  +A  R + ++ 
Sbjct: 590 KGLGEMNAEQLWETTLNPDTRRLLPVQFMN--LDFAQSEAVVTKLMGKGEAAARRELMEL 647

Query: 677 RASFID 682
               ++
Sbjct: 648 HGDAVE 653


>gi|330964178|gb|EGH64438.1| DNA gyrase subunit B [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 805

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 226/569 (39%), Positives = 342/569 (60%), Gaps = 19/569 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S +  YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I
Sbjct: 2   SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            + +  +  +TV DNGRGIPV+ H K    S  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  SIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+I F+P    F 
Sbjct: 121 GVSVVNALSELLLLTVRRSGKIWEQTYIHGVPQEPMKIVGE-SDSTGTQIHFKPSADTFK 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++   
Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++           G     VE A+ W +     +  + N I   +GGTH  G R 
Sbjct: 232 TNKTPVNEVFHFNVQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 289 ALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPGKL
Sbjct: 349 AVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 468

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++
Sbjct: 469 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++  PPL+++ +G +  Y  D+E  ++ +
Sbjct: 529 YIAQPPLYKVKKGKQEQYIKDDEAMEEYM 557



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             ++ L         +  I R+KGLGEM   QL ET MD + R +L+V I   +      
Sbjct: 719 EFKQALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIG----A 774

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
               N LMG   + R  FI+  A  + ++ 
Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804


>gi|257092303|ref|YP_003165944.1| DNA topoisomerase IV subunit B [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044827|gb|ACV34015.1| DNA topoisomerase IV, B subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 649

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 244/663 (36%), Positives = 349/663 (52%), Gaps = 43/663 (6%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y A SI +L+GLEPVR RPGMY   T      H+  E IDNA DE + GY   I V+L 
Sbjct: 2   SYTAESIAVLKGLEPVRHRPGMY---TRTDCPLHIIQEAIDNAADEALGGYCKRISVTLH 58

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGLHGVG 158
            +  +TV D+GRGIPVE HP      TLE++ T LHAGGKF+       Y  SGGLHGVG
Sbjct: 59  RDHSVTVQDDGRGIPVEMHP-LEKVPTLEVVFTRLHAGGKFNKDDGASAYRFSGGLHGVG 117

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFG 217
           +SV NALS  L V V R        F+ G  + PL++     +   GTR+   PDP  F 
Sbjct: 118 VSVTNALSTRLEVEVVRDGARHRMAFAGGEVVEPLQRVGDAPKKTTGTRLRAWPDPA-FF 176

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           D      A+L ++ +SKA L   +    S +             E+ F  G+  YL  ++
Sbjct: 177 DTPAIPLAQLERLLRSKALLLPGLHVSLSVE--------DGATSEWCFANGMLQYLAEQI 228

Query: 278 ENR---SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESG 333
           +      + SSE +  K ++         WAI W  E      SY N I T  GGTHE+G
Sbjct: 229 DGEAVAPVFSSEKYAAKGDENFPAGSGAAWAICWTAEGGLARESYVNLIPTTAGGTHEAG 288

Query: 334 LRVALTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           LR A    I+ +AE      + + + ++D+   A  +L+V + +P F GQTK +L S DA
Sbjct: 289 LRQAALDAIRSFAEHHALLPKGVKLAAEDVFSRASFVLAVRMLDPSFQGQTKERLNSRDA 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
              V   LRDP + +L ++P  A ++ +  I  ++ R R  ++ E  +++ +    LPGK
Sbjct: 349 VALVARMLRDPLELWLNEHPEAAKRITDLAIRAAQARTRAGQKVEKRKQSGV--AILPGK 406

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L+DC     +  E+F+VEGDSAGGSAK  R++  QA+LPLRGK+LN     +  +  N++
Sbjct: 407 LSDCQSEDVNRNEIFLVEGDSAGGSAKSGRDKELQAILPLRGKVLNTWEVEAGSLFANRE 466

Query: 513 IMDLVQALGCRTRSQYREE----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           + D+  ALG         +    +LRY KV+IMTDADVDG+HI  LL T FY+    LI 
Sbjct: 467 VHDIAVALGIDPHPPSAPDAVLTNLRYGKVVIMTDADVDGSHIRVLLCTLFYRHFPKLIA 526

Query: 569 QKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKG--KIEISRFKG 619
           + HL+   PPL+R+    QG     + +YA D   +   ++  +  G     I ISRFKG
Sbjct: 527 RGHLYFAQPPLYRLDVPGQGKNRPPRKIYALDSAERDASIDRLRLEGVKPEAISISRFKG 586

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQERA 678
           LGEM   QL ET M  + R L+R+ +       +  +  +N LM   ++  R  +++E  
Sbjct: 587 LGEMNPEQLWETTMSPDTRRLMRIRMPG----TEAAKPVMNMLMAKGESAGRRAWMEENG 642

Query: 679 SFI 681
           + I
Sbjct: 643 AMI 645


>gi|225023722|ref|ZP_03712914.1| hypothetical protein EIKCOROL_00586 [Eikenella corrodens ATCC
           23834]
 gi|224943604|gb|EEG24813.1| hypothetical protein EIKCOROL_00586 [Eikenella corrodens ATCC
           23834]
          Length = 799

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 230/572 (40%), Positives = 338/572 (59%), Gaps = 19/572 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95
            +     Y A SI++LEGLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   TEQTQQEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I VS++ +  +T+ DNGRGIP   HPK   +S  E+I+T LHAGGKFDN++Y++SGGLH
Sbjct: 62  SITVSINADESITIEDNGRGIPTGIHPK-EGRSAAEVIMTILHAGGKFDNNSYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-KKEKVRNKRGTRITFRPDPK 214
           GVG+SVVNALSD L +T+ R+      +F RG  ++PL+   +   +K GTR+ F    +
Sbjct: 121 GVGVSVVNALSDWLKLTIWREGKEHFVEFRRGETVAPLKAVADCPADKHGTRVQFMASEE 180

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
            FG+   +    L K  +  ++L+  VK      ++        + E F   GG+  +++
Sbjct: 181 TFGEV-QYKFETLAKRIRELSFLNNGVKIELFDKRD-------GKHENFAESGGVAGFVR 232

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
                +  +  +IF    E+ G    TVE A+ W +     +  + N I   +GGTH + 
Sbjct: 233 YTTGGKKPLHDKIFYTLGERDG---MTVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTA 289

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           LR A+TR I +Y E  +   K  +    DD+    V +LSV + +P+F+ QTK KLVS +
Sbjct: 290 LRAAMTRTINQYIEANEIAKKAKVDTSGDDMREGLVCVLSVKLPDPKFSSQTKDKLVSSE 349

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLP 450
               V   L      +L +NP +A  +   +++ +  R   RK RE+ R+   +  L LP
Sbjct: 350 IAPVVNEVLSQALHEFLEENPQDAKIICSKIVDAARAREAARKAREITRRKGVMDGLGLP 409

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  EK+  +
Sbjct: 410 GKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFEKMLAS 469

Query: 511 QQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           Q++  L+ ALG     +    E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+
Sbjct: 470 QEVATLITALGTSIGKEEFNLEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVER 529

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
            ++++  PPL++   G +  Y  D+  K + L
Sbjct: 530 GYIYIAQPPLYKAKYGKQERYLKDDTEKDEFL 561



 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 4/90 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ ++      +  + I R+KGLGEM A QL ET MD   R LL+V I   +       
Sbjct: 714 FEQSIDILLAGAQKGMAIQRYKGLGEMNAEQLWETTMDPEVRRLLKVRIEDAI----AAD 769

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVGT 686
                LMG + + R +FI+  A    ++  
Sbjct: 770 KVFVTLMGDEVEPRREFIETNALIAQNIDA 799


>gi|120596837|ref|YP_961411.1| DNA gyrase subunit B [Shewanella sp. W3-18-1]
 gi|146291115|ref|YP_001181539.1| DNA gyrase subunit B [Shewanella putrefaciens CN-32]
 gi|120556930|gb|ABM22857.1| DNA gyrase subunit B [Shewanella sp. W3-18-1]
 gi|145562805|gb|ABP73740.1| DNA gyrase subunit B [Shewanella putrefaciens CN-32]
 gi|319424421|gb|ADV52495.1| DNA gyrase, B subunit [Shewanella putrefaciens 200]
          Length = 805

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 225/582 (38%), Positives = 346/582 (59%), Gaps = 18/582 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I 
Sbjct: 2   SENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDIT 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           +++  +G ++V D+GRGIPV  H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG
Sbjct: 62  ITIHVDGSVSVKDDGRGIPVAIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS +L +T+ R   ++ Q ++ G+P +P+++        GT I F P    F D
Sbjct: 121 VSVVNALSRKLQMTIRRAGKVYEQFYTHGVPDAPIKEIGDATK-TGTEIRFWPSEDTFSD 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      +++        + E F + GG+  ++     
Sbjct: 180 V-EFHFEILAKRVRELSFLNSGVGIRLIDERDN-------KNEFFKYEGGISAFVDYLNR 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++ E+F    E+      TVE A+ W +     I  + N I   +GGTH  G R A
Sbjct: 232 NKTPVNKEVFHFMQERDD--GITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLVGFRSA 289

Query: 338 LTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K   +   DD       ++SV + +P+F+ QTK KLVS + +  
Sbjct: 290 LTRNLNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTA 349

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454
           VE  + +  + YL++NP +A  ++  +++ +  R   RK R    RK A+    LPGKLA
Sbjct: 350 VEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLA 409

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++ 
Sbjct: 410 DCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 469

Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            L+ ALGC   R +Y  +  RY  +IIMTDADVDG+HI +LLLTFF+++M +LIE+ +++
Sbjct: 470 TLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVY 529

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615
           +  PPLF++ +G +  Y  DE    + L      G       
Sbjct: 530 IAQPPLFKVKKGKQEQYLKDEPALTQYLTTQALDGTVVYPTQ 571



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           + L+      K  + I R+KGLGEM   QL ET MD   R +L+V I+  +         
Sbjct: 722 EALDWTISEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVG----ADQL 777

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
              LMG + + R +FI+  A  + ++ 
Sbjct: 778 FTCLMGDQVEPRREFIEANALNVANLD 804


>gi|170746766|ref|YP_001753026.1| DNA gyrase, B subunit [Methylobacterium radiotolerans JCM 2831]
 gi|170653288|gb|ACB22343.1| DNA gyrase, B subunit [Methylobacterium radiotolerans JCM 2831]
          Length = 814

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 239/588 (40%), Positives = 349/588 (59%), Gaps = 23/588 (3%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAG 92
           A   Q+    Y A SIR+L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG
Sbjct: 2   ADTPQTEPAVYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAG 61

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           +A+L+ V+L+ +G  TV DNGRGIPV+ H K    S  E+I+T LHAGGKFD ++Y++SG
Sbjct: 62  HADLVTVTLNADGSCTVSDNGRGIPVDIH-KEEGVSAAEVIMTQLHAGGKFDQNSYKVSG 120

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS  L + + R +   + +F  G  ++PLE       +RGT +TF P 
Sbjct: 121 GLHGVGVSVVNALSSWLRLRIWRNDKEHAMEFRHGDAVAPLEVIGPGNGRRGTEVTFLPS 180

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            + F     FD A L K  +  A+L+  V+   +  +   +K      EE Y+ GG++ +
Sbjct: 181 TETFT-MIEFDYATLEKRLRELAFLNSGVRIVLTDARHAEKKR-----EELYYEGGIEAF 234

Query: 273 LQTKLENRSLIS--SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
           ++    +R  I   +      +E+ G     VE A  W +     +  + N I   +GGT
Sbjct: 235 VRYLDRSRKPIDGMTSPVVVSSERDGI---RVEVAFWWNDSFNETVLPFTNNIPQRDGGT 291

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R ALTR +  YAE +    K  +S+  +D       ++SV + +P+F+ QTK KL
Sbjct: 292 HMAGFRAALTRQVTGYAESSGIAKKEKVSLTGEDCREGLTAVISVQVPDPKFSSQTKDKL 351

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRK 446
           VS + +  VEN L +    +L +NP +A  ++  V+  +  R   RK RE   RK A+  
Sbjct: 352 VSSEVRPAVENVLNEGLSTWLEENPSQARSVMGKVVLAASAREAARKARETVTRKGALDI 411

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +      E+ +VEGDSAGGSAKQ R+R+ QAVLPLRGKILNV    +++
Sbjct: 412 ASLPGKLADCQERDPTKCEILLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERVRADR 471

Query: 507 IRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           + ++ +I  L+ ALG         R  +  E LRY ++IIMTDADVDG+HI +LLLTFF+
Sbjct: 472 MLSSAEIGTLITALGAGIGRSSTDREGFNPEKLRYHRIIIMTDADVDGSHIRTLLLTFFF 531

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++M +LIE+ HL++  PPL++  +G +++Y  DE   +  L +    G
Sbjct: 532 RQMPELIERGHLYIAQPPLYKAERGRRAIYLKDERALEDYLIDQGTEG 579



 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            + E     G+  +++ R+KGLGEM A QL ET +D + R+LL+V +      + D  D 
Sbjct: 731 ALFEAVMAFGRKGLQLQRYKGLGEMTAQQLWETTLDRDVRSLLQVRV----KDVTDADDL 786

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R +FIQE A  + ++ 
Sbjct: 787 FVKLMGDVVEPRREFIQENALSVANLD 813


>gi|149204288|ref|ZP_01881255.1| DNA gyrase subunit B [Roseovarius sp. TM1035]
 gi|149142173|gb|EDM30220.1| DNA gyrase subunit B [Roseovarius sp. TM1035]
          Length = 805

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 220/573 (38%), Positives = 331/573 (57%), Gaps = 16/573 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
               +A + Y A SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DN +DE +AG+
Sbjct: 2   SEPAAAPEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGH 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ + V++  +  ++V DNGRGIPV+ H +    S  E+I+T LHAGGKFD+++Y++SGG
Sbjct: 62  ADAVNVTIHADSSVSVSDNGRGIPVDIH-EGEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS+ L + + R       +F  G  +  L        ++GT + F    
Sbjct: 121 LHGVGVSVVNALSEWLELRIWRNGKEHYARFEGGFTVESLRVVGDANGRKGTEVRFLAST 180

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           + F +   +    L K  +  A+L+  V+   + ++        P + E ++ GG+K ++
Sbjct: 181 ETFSNL-EYIFETLEKRLRELAFLNSGVRIILTDER-----PTEPLRSELFYEGGVKEFV 234

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +    ++S    +      E+       +E A+ W +     +  + N I   +GGTH +
Sbjct: 235 KYLDRHKSPAMPDPIFITGERDDI---GIEVAMWWNDSYHETVLPFTNNIPQRDGGTHLA 291

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR I  YA+ +    K  ++   DD       +LSV + +P+F+ QTK KLVS 
Sbjct: 292 GFRGALTRTINTYAQTSGIAKKEKVTFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 351

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           + +  VE  + +    +  +NP  A  ++  +IE +  R   RK RE   RK  +    L
Sbjct: 352 EVRPAVEGLVGEKLAEWFEENPQVARVIVGKIIEAAHAREAARKARELTRRKNPMDVNFL 411

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
            GKL DCS      TELF+VEGDSAGGSA+  R+R  QAVLPLRGKILNV  A  +++  
Sbjct: 412 AGKLKDCSSKDPSKTELFLVEGDSAGGSAQTGRDRGTQAVLPLRGKILNVERARFDRMLG 471

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q+I +LV ALG    R ++  + LRY K++IMTDADVDGAHI +LLLTFFY++M +LIE
Sbjct: 472 SQEIGNLVMALGTGIGRDEFDIKKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIE 531

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
             +L++  PPL+++ +G   VY  D+   +  L
Sbjct: 532 GGYLYIAQPPLYKVMRGKSEVYLKDQGGLEDYL 564



 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L+   K G+  + + R+KGLGEM  +QL ET +D   RTLL+V+I+     + +  D 
Sbjct: 722 DLLDAILKEGEKGLSLQRYKGLGEMNPNQLWETTLDPEARTLLQVKIDD----VAEADDL 777

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R +FIQ+ A  + ++ 
Sbjct: 778 FTKLMGDVVEPRREFIQDNALNVANLD 804


>gi|302877248|ref|YP_003845812.1| DNA gyrase, B subunit [Gallionella capsiferriformans ES-2]
 gi|302580037|gb|ADL54048.1| DNA gyrase, B subunit [Gallionella capsiferriformans ES-2]
          Length = 792

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 223/566 (39%), Positives = 335/566 (59%), Gaps = 19/566 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
             YD++SI++L+GLE VR RPGMYIG T D   LHH+  E +DNA+DE +AG+ N I V 
Sbjct: 2   SEYDSTSIKVLKGLEAVRKRPGMYIGDTNDGTGLHHMVFEAVDNAVDEALAGHCNEINVI 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  ++V DNGRGIP + H K   +S  E+I+T LHAGGKFD+++Y++SGGLHGVG+S
Sbjct: 62  IHADNSISVSDNGRGIPTDIH-KEEGRSAAEVIMTILHAGGKFDSNSYKVSGGLHGVGVS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ L +T+ R+      +F  G P++PL+   + +  +GT + F    + FG   
Sbjct: 121 VVNALSEWLKLTIYREGKEHFMEFRHGDPVAPLKVIGESKK-KGTVVHFLAAKETFGLI- 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L K  +  ++L+  VK      +   E       E F F GG+K ++     N+
Sbjct: 179 EFHFDILAKRLRELSFLNNGVKIALIDHRNGKE-------ENFSFTGGIKGFVDYMNRNK 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + +   +F    EK G    T E A+ W +     +  + N I   +GGTH + +R A+T
Sbjct: 232 TALHPTVFHAIGEKDG---MTAEIAMQWNDTYQESVQCFTNNIPQRDGGTHLTAMRAAMT 288

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  Y E  Q   K  +    DD+      +LSV + +P+F+ QTK KLVS + +  +E
Sbjct: 289 RTLNNYIEAEQLAKKAKVEPTGDDMREGLTAVLSVKLPDPKFSSQTKDKLVSSEVRPVIE 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADC 456
             +      +L++ P +A  ++  +IE +  R   RK R++ R+   +  + LPGKLADC
Sbjct: 349 ELIGQQMSAFLLERPNDAKIIVGKIIEAARAREAARKARDLTRRKGVLDGMGLPGKLADC 408

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  EK+ ++Q+I  L
Sbjct: 409 QEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFEKLISSQEIATL 468

Query: 517 VQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           +  LG          + LRY ++IIMTDADVDG+HI +LLLTFFY++M +L+E+ H+++ 
Sbjct: 469 ITVLGTGIGKDEYNADKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELVERGHIYIA 528

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKIL 601
            PPL++I QG +  Y  D+   +  L
Sbjct: 529 QPPLYKIKQGREERYLKDDLEMKSYL 554



 Score =  126 bits (317), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ +E   +  K  + I R+KGLGEM   QL ET M    R LL+V I   +       
Sbjct: 707 FKQAIEWLLEEAKRGLSIQRYKGLGEMNPEQLWETTMFVKNRILLKVRIEDTI----AAD 762

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           +    LMG   + R  FI++ A    ++ 
Sbjct: 763 EVFTTLMGDLVEPRRAFIEKNALGAKNLD 791


>gi|170724374|ref|YP_001758400.1| DNA gyrase subunit B [Shewanella woodyi ATCC 51908]
 gi|169809721|gb|ACA84305.1| DNA gyrase, B subunit [Shewanella woodyi ATCC 51908]
          Length = 805

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 224/575 (38%), Positives = 348/575 (60%), Gaps = 18/575 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ N + 
Sbjct: 2   SENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCNDVI 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           +++  +G ++V D+GRGIPV  HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG
Sbjct: 62  ITIHADGSVSVKDDGRGIPVAIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS +L +T+ R   ++ Q ++ G P+ P++      N  GT I F P  + F D
Sbjct: 121 VSVVNALSSKLQLTIRRDGKLYEQFYNMGEPVEPIKAIGDATN-TGTEIRFWPSSETFSD 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      +++  +       E F + GG+  ++     
Sbjct: 180 TL-FHFDILAKRVRELSFLNSGVGIRLVDERDNKD-------EFFKYEGGISAFVDYLNV 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++ ++F    E++     TVE A+ W +     I  + N I   +GGTH +G R A
Sbjct: 232 NKTPVNKDVFHFIQERED--GITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRGA 289

Query: 338 LTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K       DD       ++SV + +P+F+ QTK KLVS + +  
Sbjct: 290 LTRNLNSYMEREGYNKKGKTGATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSA 349

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454
           VE  + +    YL+++P EA  ++  +I+ +  R   RK R    RK A+    LPGKLA
Sbjct: 350 VEQTMGEQLGDYLMEHPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLA 409

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q+++
Sbjct: 410 DCQEKDPALSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVV 469

Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            L+ ALGC   R +Y  +  RY  ++IMTDADVDG+HI +LLLTFF+++M +LIE+ +++
Sbjct: 470 TLITALGCGIGRDEYDPDKTRYHNIVIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVY 529

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +  PPL+++ +G +  Y  D+    + L      G
Sbjct: 530 IAQPPLYKVKKGKQEQYLKDDPALTEYLTNLALDG 564



 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           + L       K  + I R+KGLGEM   QL ET MD   R +L V I   +         
Sbjct: 722 EALNWLMNDSKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLVVTIEDAI----AADQL 777

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
              LMG   + R  FI+  A  + ++ 
Sbjct: 778 FTCLMGDHVEPRRDFIESNALNVANLD 804


>gi|330890246|gb|EGH22907.1| DNA gyrase subunit B [Pseudomonas syringae pv. mori str. 301020]
          Length = 805

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 226/569 (39%), Positives = 341/569 (59%), Gaps = 19/569 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S +  YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I
Sbjct: 2   SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            + +  +  +TV DNGRGIPV+ H K    S  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  SIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+I F+P    F 
Sbjct: 121 GVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDTTGTQIHFKPSADTFK 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++   
Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++           G     VE A+ W +     +  + N I   +GGTH  G R 
Sbjct: 232 TNKTPVNEVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 289 ALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPGKL
Sbjct: 349 AVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 468

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF++++ +LIE  ++
Sbjct: 469 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIESGYI 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++  PPL+++ +G +  Y  D+E  ++ +
Sbjct: 529 YIAQPPLYKVKKGKQEQYIKDDEAMEEYM 557



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             ++ L         +  I R+KGLGEM   QL ET MD + R +L+V I   +      
Sbjct: 719 EFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIG----A 774

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
                 LMG   + R  FI+  A  + ++ 
Sbjct: 775 DQIFTTLMGDAVEPRRDFIESNALAVSNLD 804


>gi|146280401|ref|YP_001170554.1| DNA gyrase subunit B [Pseudomonas stutzeri A1501]
 gi|145568606|gb|ABP77712.1| DNA gyrase subunit B [Pseudomonas stutzeri A1501]
          Length = 804

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 228/565 (40%), Positives = 342/565 (60%), Gaps = 20/565 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGY + I +++
Sbjct: 6   TYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCSDISITI 65

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  +TV DNGRGIPV+ H      S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SV
Sbjct: 66  HTDESITVRDNGRGIPVDIHE--EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 123

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+EL +T+ R+  ++ Q +  G+P +PL    +  +  GT+I F+P  + F +   
Sbjct: 124 VNALSEELLLTIRREGKVWEQLYRHGVPQAPLAAVGET-DTSGTQIHFKPSAETFQNIH- 181

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F    L K  +  ++L+  V      ++   E       E F + GGL  ++     N++
Sbjct: 182 FSWDILAKRLRELSFLNSGVGIVLRDERTAKE-------ELFKYEGGLSAFVAYLNTNKT 234

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            ++           G     VE A+ W +     I  + N I   +GGTH +G R ALTR
Sbjct: 235 AVNQVFHFNVQRDDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTR 291

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +  Y E      K  I+   DD       I+SV + +P+F+ QTK KLVS + +  VE 
Sbjct: 292 NLNNYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQ 351

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCS 457
            +   F  +L+++P EA  ++  +I+ +  R   RK R    RK A+    LPGKLADC 
Sbjct: 352 EMGKYFADFLLEHPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQ 411

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           +     +EL+IVEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++  L+
Sbjct: 412 EKDPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLI 471

Query: 518 QALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
            ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++++  
Sbjct: 472 TALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYVYIAQ 531

Query: 577 PPLFRITQGTKSVYAHDEEHKQKIL 601
           PPL+++ +G +  Y  D+E  ++ L
Sbjct: 532 PPLYKVKRGKQEQYIKDDEAMEEYL 556



 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+     G  +  + R+KGLGEM   QL ET MD N R +L+V I   +       
Sbjct: 719 FKEALDWLMNEGTRRHSVQRYKGLGEMNPDQLWETTMDPNVRRMLKVTIEDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
              N LMG   + R +FI+  A  + ++ 
Sbjct: 775 QIFNTLMGDAVEPRREFIETNALAVSNLD 803


>gi|95929989|ref|ZP_01312729.1| DNA gyrase, B subunit [Desulfuromonas acetoxidans DSM 684]
 gi|95133958|gb|EAT15617.1| DNA gyrase, B subunit [Desulfuromonas acetoxidans DSM 684]
          Length = 791

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 234/573 (40%), Positives = 348/573 (60%), Gaps = 18/573 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            +NY A +I++LEGL  VR RP MYIG T  + LHHL  EV+DN++DE +AG+ + + V+
Sbjct: 2   ENNYSAENIKVLEGLTAVRKRPAMYIGSTSSQGLHHLVYEVVDNSIDEALAGFCDSVYVT 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L+ +G +TV DNGRGIPV+ H    NKS  E+++T LHAGGKFD+ TY++SGGLHGVG+S
Sbjct: 62  LNVDGSVTVEDNGRGIPVDWHA-TENKSAAEVVMTVLHAGGKFDSDTYKVSGGLHGVGVS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L + + R   I+ Q +  GIP + L++       +GT+ITF PD  IF    
Sbjct: 121 VVNALSSKLELEIRRNGKIYEQTYETGIPKTDLKEVSDTIK-KGTKITFWPDASIFET-V 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +    L K  +  A+L+  V+   + D+         + +EFY+ GG+ ++++     +
Sbjct: 179 EYSYEVLSKRLRELAFLNAGVRVTITDDR-------TEKVQEFYYEGGISSFVEYLNRAK 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + + + I     EK+G     +E A  + +    +I ++ N I T EGGTH  G + ALT
Sbjct: 232 NPLHNNIIFFNGEKEGVQ---IEIAFQYNDGYDEKIYTFANNINTHEGGTHLVGFKAALT 288

Query: 340 RGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  YA      + I   +  DDL      ++SV + +P+F GQTKTKL + + +  VE
Sbjct: 289 RTMNAYATANNLLKNIKASVSGDDLREGMAAVISVKVPDPQFEGQTKTKLGNSEIKGYVE 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
             + +    YL +NP  A K+LE  IE +  R   RK R+   RK A+  L LPGKLADC
Sbjct: 349 TLINEKLAVYLEENPQVAKKILEKGIEAARAREAARKARDLTRRKGALDGLSLPGKLADC 408

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            +     +E++IVEGDSAGGSAKQ R+RSNQA+LPL+GKILNV  +  +K+  + +I  L
Sbjct: 409 QEKDPALSEIYIVEGDSAGGSAKQGRDRSNQAILPLKGKILNVEKSRFDKMLTSNEIRTL 468

Query: 517 VQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           + A+G    +  +    +RY ++IIMTDADVDG+HI +LLLTFF+++M ++IE+ +L++ 
Sbjct: 469 ITAMGAGIGKDDFDIAKIRYHRIIIMTDADVDGSHIRTLLLTFFFRQMPEIIERGYLYIA 528

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
            PPL+++ +G K +Y  DEE     L       
Sbjct: 529 QPPLYKLKKGKKEIYLKDEETLLDYLLSIGVEN 561



 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 4/93 (4%)

Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652
               ++++L+ F    K    I R+KGLGEM   QL ET MD  KR LL+V+I   +   
Sbjct: 702 SVNDREELLDFFLSRAKKGQYIQRYKGLGEMNPEQLWETTMDPEKRVLLQVKIEDAV--- 758

Query: 653 KDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             T +    LMG + + R +FI+  A  + ++ 
Sbjct: 759 -ATDNIFTVLMGDQVEPRREFIENNALNVSNLD 790


>gi|327478616|gb|AEA81926.1| DNA gyrase subunit B [Pseudomonas stutzeri DSM 4166]
          Length = 804

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 228/565 (40%), Positives = 342/565 (60%), Gaps = 20/565 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGY + I +++
Sbjct: 6   TYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCSDISITI 65

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  +TV DNGRGIPV+ H      S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SV
Sbjct: 66  HTDESITVRDNGRGIPVDIHE--EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 123

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+EL +T+ R+  ++ Q +  G+P +PL    +  +  GT+I F+P  + F +   
Sbjct: 124 VNALSEELLLTIRREGKVWEQLYRHGVPQAPLAAVGET-DTSGTQIHFKPSAETFQNIH- 181

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F    L K  +  ++L+  V      ++   E       E F + GGL  ++     N++
Sbjct: 182 FSWDILAKRLRELSFLNSGVGIVLRDERTAKE-------ELFKYEGGLSAFVAYLNTNKT 234

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            ++           G     VE A+ W +     I  + N I   +GGTH +G R ALTR
Sbjct: 235 AVNQVFHFNVQRDDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTR 291

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +  Y E      K  I+   DD       I+SV + +P+F+ QTK KLVS + +  VE 
Sbjct: 292 NLNNYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQ 351

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCS 457
            +   F  +L+++P EA  ++  +I+ +  R   RK R    RK A+    LPGKLADC 
Sbjct: 352 EMGKYFADFLLEHPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQ 411

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           +     +EL+IVEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++  L+
Sbjct: 412 EKDPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLI 471

Query: 518 QALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
            ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++++  
Sbjct: 472 TALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYVYIAQ 531

Query: 577 PPLFRITQGTKSVYAHDEEHKQKIL 601
           PPL+++ +G +  Y  D+E  ++ L
Sbjct: 532 PPLYKVKRGKQEQYIKDDEAMEEYL 556



 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+     G  +  + R+KGLGEM   QL ET MD N R +L+V I   +       
Sbjct: 719 FKEALDWLMNEGTRRHSVQRYKGLGEMNPDQLWETTMDPNVRRMLKVTIEDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
              N LMG   + R +FI+  A  + ++ 
Sbjct: 775 QIFNTLMGDAVEPRREFIETNALAVSNLD 803


>gi|160871558|ref|ZP_02061690.1| DNA gyrase, B subunit [Rickettsiella grylli]
 gi|159120357|gb|EDP45695.1| DNA gyrase, B subunit [Rickettsiella grylli]
          Length = 847

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 236/571 (41%), Positives = 352/571 (61%), Gaps = 18/571 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           YD+S+I++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGY + I++ L 
Sbjct: 47  YDSSNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDESLAGYCSQIDIILH 106

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G +TV DNGRGIPV+ H +  N+S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVV
Sbjct: 107 SDGSVTVKDNGRGIPVDIHTE-ENRSAAEVIMTVLHAGGKFDSNSYKVSGGLHGVGVSVV 165

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS++LH+ + R N ++ Q +  G P +PL+     +  RGT I F P+  IF     F
Sbjct: 166 NALSEKLHLIIRRNNNVYEQTYRLGEPTAPLQITGTTQE-RGTEIRFYPNKLIFQQNNKF 224

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               LLK  +  ++L+  V    + ++   E        +F + GG+K +++   +N++L
Sbjct: 225 HYDILLKRLRELSFLNSGVAINITDERTNEET-------QFKYIGGIKAFVEYLNQNKTL 277

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           I  + F    E+ G    +VE A+ W +     I  + N I   +GGTH +G R ALTR 
Sbjct: 278 IHKQPFYFSAERDGI---SVEVALQWNDSFQENIFCFTNNISQRDGGTHLAGFRAALTRT 334

Query: 342 IKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +  Y E   T  K  I+   DD       +LSV + +P+F+ QTK KLVS + +  VE  
Sbjct: 335 LNTYIEHEATNKKLKIATTGDDTREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKGIVETL 394

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458
             +  + +L++ P +A  ++  +I+ +  R   RK R    RKTA+    LPGKLADC +
Sbjct: 395 TSEKLEAFLLETPQDARAIMMKIIDAARAREAARKAREMTRRKTALDIADLPGKLADCQE 454

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 ELFIVEGDSAGGSAKQ RNR  QA+LPL GKILNV  +  +K+ +++ +  L+ 
Sbjct: 455 TDPALCELFIVEGDSAGGSAKQGRNRRYQAILPLTGKILNVEKSRFDKMLSSEAVGTLII 514

Query: 519 ALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
           ALGC   + +Y  + LRY ++IIMTDADVDG+HI +LLLTFFY++M +L+++  +++  P
Sbjct: 515 ALGCGIGKEEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELLQRGTIYIAQP 574

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           PL++I +G +  Y  D+   Q  L +   H 
Sbjct: 575 PLYKIKKGKQEQYLKDDAALQAYLTQTALHN 605



 Score =  133 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            +++ E      +    I R+KGLGEM   QL +T MD N R L+RV I   +     T 
Sbjct: 762 FKEVYEWLLAEARRGQAIQRYKGLGEMNPDQLWQTTMDPNTRCLVRVTIEDAI----ATD 817

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG + + R  FIQ+ A  + ++ 
Sbjct: 818 QIFTTLMGDQVEPRRDFIQQNALEVGNLD 846


>gi|237746615|ref|ZP_04577095.1| DNA topoisomerase IV subunit B [Oxalobacter formigenes HOxBLS]
 gi|229377966|gb|EEO28057.1| DNA topoisomerase IV subunit B [Oxalobacter formigenes HOxBLS]
          Length = 659

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 248/670 (37%), Positives = 354/670 (52%), Gaps = 42/670 (6%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
                Y   SI +L+GLEPVR RPGMY   T  +   H+ +EVIDNA DE I GY   I+
Sbjct: 3   EKKSIYSEESITVLKGLEPVRQRPGMY---TRTENPLHIVTEVIDNASDEAIGGYCKNIQ 59

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS---TYEISGGLH 155
           V L+ +G ++V D+GRGIPV  HP+     T+EI+ T LHAGGKF       Y  SGGLH
Sbjct: 60  VCLNADGSVSVEDDGRGIPVGLHPE-EKVPTVEIVFTRLHAGGKFAKGGESAYAFSGGLH 118

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDP 213
           GVG+SV NALS  + VTV R+  +    F+ G    PL  +   R   K GT++T  PD 
Sbjct: 119 GVGVSVTNALSKRIEVTVWREKQVHHIAFTDGDVSEPLTSRPLSRGEKKSGTKVTVWPDA 178

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F          L  + +SKA L   V       K         E E + +  GL+ YL
Sbjct: 179 KYFDSMTIPLPE-LKHLLRSKAILLPGVHVELHNAK-------TGETETWQYEDGLRGYL 230

Query: 274 QTKLE--NRSLISSEIFTGKTEKKGTHRG-----TVEWAIAWCEENP-EITSYCNTILTD 325
              LE  +       +F G+    G + G        W +AW  + P    S+ N I T 
Sbjct: 231 SQALELASGDETVIPLFAGEHYADGENEGFAGGEGAAWIVAWTADGPLVRESFVNLIPTT 290

Query: 326 EGGTHESGLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
            GGTHESGLR  L   ++ + +  +   + + ++ +D+      +LS  + +P+F GQ K
Sbjct: 291 AGGTHESGLRDGLFNAVRSFTDIHSLLPKGVRLLPEDVFARVSFVLSAKVLDPQFQGQIK 350

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI 444
            +L S DA R V + +R  F+ +L QN     KL E VI +++ R+R+ ++ E  + +A+
Sbjct: 351 ERLNSRDAVRLVSHFVRPAFELWLHQNVEYGRKLAELVIRQAQSRMRQLQKVEKKKSSAV 410

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
             L  PGKL DC        ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN      
Sbjct: 411 AVL--PGKLTDCESRDISRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNSWETEK 468

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
           +++  NQ+I D+  A+G          D   LRY K+ I++DADVDG+HI  LLLT F++
Sbjct: 469 DRLFANQEIHDIAVAVGVDPHGANDSPDLSGLRYGKICILSDADVDGSHIQVLLLTLFFR 528

Query: 562 EMYDLIEQKHLFLISPPLFRIT---QGTKSV---YAHDEEHKQKILEEFKKHG--KGKIE 613
               LIE  ++++  PPL+RI    +G K +   YA D+     IL++ K  G     + 
Sbjct: 529 HFPRLIENGNIYVARPPLYRIDAPARGRKPIQKLYALDDMELAGILDKLKSEGVKDSALG 588

Query: 614 ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFK 672
           ISRFKGLGEM A QL ET ++ + R LL +       +  ++ +    LMG  +A  R  
Sbjct: 589 ISRFKGLGEMNAEQLWETTLNPDTRRLLPITF--GAFTRDESTERFQMLMGKGEAAARRN 646

Query: 673 FIQERASFID 682
           +++E  +  +
Sbjct: 647 WMEEHGNEAE 656


>gi|103488449|ref|YP_618010.1| DNA gyrase, B subunit [Sphingopyxis alaskensis RB2256]
 gi|98978526|gb|ABF54677.1| DNA gyrase subunit B [Sphingopyxis alaskensis RB2256]
          Length = 858

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 224/586 (38%), Positives = 347/586 (59%), Gaps = 19/586 (3%)

Query: 26  SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDN 84
           + E       A Q  ++ Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV DN
Sbjct: 4   TPENSAPEGAAKQPNANAYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDN 63

Query: 85  AMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF- 143
           A+DE +AG+ +LI ++L+ +G ++V DNGRGIP + H +    S  E+I+T LHAGGKF 
Sbjct: 64  AIDEALAGHCDLILITLNSDGSVSVEDNGRGIPTDIHAE-EGVSAAEVIMTQLHAGGKFE 122

Query: 144 ---DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
              D++ Y++SGGLHGVG+SVVNALS+ L +T+ R       +F  G  ++PL       
Sbjct: 123 NTSDDNAYKVSGGLHGVGVSVVNALSEWLELTIWRDGQEHWMRFEHGDAVAPLRVNGPAP 182

Query: 201 -NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
             K+GTR+TF+     F +   FD  +L    +  A+L+  V+      +     +    
Sbjct: 183 AGKKGTRVTFQASTDTFKNVTEFDFEKLEHRYRELAFLNSGVRIKLVDAR-----HAEHV 237

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT-HRGTVEWAIAWCEENPEITSY 318
             + ++ GG+  +++    N++ +  +     +E+ G      +EW  ++      +  +
Sbjct: 238 SHDLFYEGGIAAFVKYLDRNKTPLLPDPIAISSERDGIGIDVALEWNDSY---YENVLCF 294

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +  R ALTR +  Y E +    K  +S+  +D+      I+SV + +
Sbjct: 295 TNNIPQRDGGTHLAAFRAALTRTLNGYGEKSGLLKKEKVSLTGEDMREGLTAIVSVKLPD 354

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F+ QTK KLVS + ++ +E+ + D    +L +NP  A  +++ V++ +  R   +K R
Sbjct: 355 PKFSSQTKDKLVSSEVRQPLESLMADRMTEWLEENPAYAKAVIQKVVDAAAAREAAKKAR 414

Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E   RK A+    LPGKLADC +      ELF+VEGDSAGGSAKQ R+R  QA+LPL+GK
Sbjct: 415 ELTRRKGAMDIASLPGKLADCQERDPAKCELFLVEGDSAGGSAKQGRDRHVQAILPLKGK 474

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLL 555
           ILNV  A  ++I +++++  L+QALG   R ++  E LRY K++IMTDADVDGAHI +LL
Sbjct: 475 ILNVERARFDRIISSKEVGTLIQALGTGIRDEFNIEKLRYHKIVIMTDADVDGAHIRTLL 534

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           LTFFY++M ++IE+ HL++  PPL+++ +G   VY  D+   +  L
Sbjct: 535 LTFFYRQMPEIIEKGHLYIAQPPLYKVAKGRSEVYLKDDSALENYL 580



 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           ++LE    H +  + ISR+KGLGEM A QL ET +D + R+LLRV    +        + 
Sbjct: 775 ELLEAIFAHSRKGLAISRYKGLGEMNAEQLWETTLDPSNRSLLRV----EAEQADIAHEI 830

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             +LMG + + R  FIQ  A  + ++ 
Sbjct: 831 FERLMGDEVEPRRDFIQTNALSVANLD 857


>gi|118498118|ref|YP_899168.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp.
           novicida U112]
 gi|194323345|ref|ZP_03057129.1| DNA topoisomerase IV, B subunit [Francisella tularensis subsp.
           novicida FTE]
 gi|208779469|ref|ZP_03246814.1| DNA topoisomerase IV, B subunit [Francisella novicida FTG]
 gi|118424024|gb|ABK90414.1| topoisomerase IV, subunit B [Francisella novicida U112]
 gi|194322709|gb|EDX20189.1| DNA topoisomerase IV, B subunit [Francisella tularensis subsp.
           novicida FTE]
 gi|208744430|gb|EDZ90729.1| DNA topoisomerase IV, B subunit [Francisella novicida FTG]
          Length = 627

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 242/642 (37%), Positives = 356/642 (55%), Gaps = 21/642 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY+A SI +L GL+PV+ RPGMY   T+ +  +HL  E+IDN++DEV+AG+A+ I ++L
Sbjct: 2   QNYNAKSIEVLTGLDPVKKRPGMY---TNTENPNHLIQEIIDNSVDEVLAGFASKINITL 58

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  + V D+GRG+PV+ HP+    S +E+I+T LH+GGKF N  Y  SGGLHGVG+SV
Sbjct: 59  YEDNSIEVADDGRGMPVDIHPEH-KMSGIELIMTKLHSGGKFSNKNYTHSGGLHGVGVSV 117

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  L   + R   ++   F  G     LE  + V +   GT+I F P+ K F D  
Sbjct: 118 VNALSTRLEAEIKRDGNVYHIVFEDGFKTKDLEIIDNVGKKNTGTKIRFWPNKKYFDDI- 176

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
             +   L  + ++KA L   +   +S + +        EK  ++F  GLK YL  KLE  
Sbjct: 177 KVNFKALKNLLEAKAILCKALTIKYSNEIK-------KEKLTWHFETGLKGYLDHKLEAE 229

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
           +L +            ++   V +            SY N I T + GTH +GL+  +  
Sbjct: 230 TLPAEPFMIDNFSNGDSYLDAV-FCWCEDPSESIKNSYVNLIPTPQDGTHVTGLKNGIYD 288

Query: 341 GIKKYAELTQNK-RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
            IK Y E      + I I ++D       ++SV I  P+FAGQTK KL + D    V   
Sbjct: 289 AIKAYIEKNSLSVKNIKITANDSFAQLNYVISVKITNPQFAGQTKEKLSNKDVTNFVATT 348

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
           ++D    +L QNP EA +++E + + +++R+    ++   ++     +RLPGKL DC  +
Sbjct: 349 VKDLLTIWLNQNPDEARQIVENISKVAQKRI-NADKKTTRKRIMNTTIRLPGKLTDCISS 407

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
             + TELFIVEGDSAGGSAKQAR+++ QAVLPL+GKILN     ++ I N+Q+I ++  A
Sbjct: 408 DVNSTELFIVEGDSAGGSAKQARDKNFQAVLPLKGKILNSWELDADTIMNSQEIHNIATA 467

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           +G    S      LRY K+ I+ DAD DG HIA+LL   F +    LIE  H+++  PPL
Sbjct: 468 IGVDPDSDDI-SALRYNKICILADADSDGLHIATLLCAMFLKHFRKLIENGHIYIAQPPL 526

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           FRI  G  + YA DE  +  IL +  K   GK+ I RFKGLGEM  +QL+E+AMD + R 
Sbjct: 527 FRIDIGKSTFYALDENERDAILAKNSKL-PGKVNIMRFKGLGEMNPAQLRESAMDVSSRR 585

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           LL++ I+   +  +        L   +A +R  +++      
Sbjct: 586 LLQLTISDVYDDAEMLDML---LAKKRAKDRRDWLENYGDRA 624


>gi|146305046|ref|YP_001185511.1| DNA gyrase subunit B [Pseudomonas mendocina ymp]
 gi|145573247|gb|ABP82779.1| DNA gyrase subunit B [Pseudomonas mendocina ymp]
          Length = 806

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 228/570 (40%), Positives = 343/570 (60%), Gaps = 20/570 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S +  YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGY + I
Sbjct: 2   SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGYCSEI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            +++  +  ++V DNGRGIPV+ H K    S  E+I+T LHAGGKFD++TY++SGGLHGV
Sbjct: 62  VITIHPDESISVRDNGRGIPVDIH-KEEGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+EL +T+ R   ++ Q +  G+P +PL       +  GT I F+   + F 
Sbjct: 121 GVSVVNALSEELRLTIRRAGKVWEQIYHHGVPQAPLATVGDT-DGTGTEIHFKASAETFS 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGLK +++   
Sbjct: 180 NIH-FSWDILAKRLRELSFLNSGVGILLRDERSGKE-------ELFKYEGGLKAFVEYLN 231

Query: 278 ENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            N+++++       + E+ G     VE A+ W +     I  + N I   +GGTH +G R
Sbjct: 232 TNKNVVNQVFHFNIQREEDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFR 288

Query: 336 VALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR +  Y E     +        DD       I+SV + +P+F+ QTK KLVS + +
Sbjct: 289 SALTRHLNNYIEQEGLAKKFKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVK 348

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGK 452
             VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPGK
Sbjct: 349 TAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGK 408

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +     +EL+IVEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++ +
Sbjct: 409 LADCQEKDPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMLSSAE 468

Query: 513 IMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF++++ +LIE+ +
Sbjct: 469 VGTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGY 528

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +++  PPL+++ +G +  Y  D+E   + +
Sbjct: 529 VYIAQPPLYKVKKGKQEQYIKDDEAMDEYM 558



 Score =  136 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+        +  I R+KGLGEM   QL ET MD   R +L+V I   +       
Sbjct: 721 FKEALDWLMAESTKRHSIQRYKGLGEMNPDQLWETTMDPEVRRMLKVTIEDAI----AAD 776

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
              N LMG   + R  FI+  A  + ++ 
Sbjct: 777 QIFNTLMGDAVEPRRDFIESNALAVSNLD 805


>gi|91974486|ref|YP_567145.1| DNA gyrase subunit B [Rhodopseudomonas palustris BisB5]
 gi|91680942|gb|ABE37244.1| DNA gyrase subunit B [Rhodopseudomonas palustris BisB5]
          Length = 813

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 245/580 (42%), Positives = 333/580 (57%), Gaps = 14/580 (2%)

Query: 26  SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDN 84
           +       A    S    Y A SIR+L+GL+ VR RPGMYIG TD+   LHH+  EV+DN
Sbjct: 2   TEPARQPIAETPPSVPAEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDN 61

Query: 85  AMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144
           A+DE +AG+A  +EV L+ +G +TV D+GRGIPV+ H K    S  E+I+T LHAGGKFD
Sbjct: 62  AIDEALAGHATAVEVVLNADGSVTVRDDGRGIPVDIH-KGEGISAAEVIMTQLHAGGKFD 120

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS +L + V R       +F+ G  ++PL        +RG
Sbjct: 121 QNSYKVSGGLHGVGVSVVNALSSKLILRVWRNGKEHIIEFAHGDAVAPLSMVGDANGRRG 180

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF   P+ F     +D A L    +  A+L+  V    S  +   EK      EE  
Sbjct: 181 TEVTFFASPETFT-HIEYDFATLEHRLRELAFLNSGVNIVLSDMRHAVEKR-----EEMR 234

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+  +++    N+  I         +  G     VE A+ W E   E    + N I 
Sbjct: 235 YEGGVTEFVKYLDRNKKPIVPAPIVLAADLNGI---GVEVALWWNETYHENVLCFTNNIP 291

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
             +GGTH +G R ALTR +  YA+    K  I++  DD       +LSV + +P+F+ QT
Sbjct: 292 QRDGGTHLAGFRAALTRQVNGYADSNAKKEKIALTGDDCREGLTAVLSVKVPDPKFSSQT 351

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKT 442
           K KLVS + +  VEN L +    +  ++P EA  ++  VIE +  R   RK RE   RK 
Sbjct: 352 KDKLVSSEVRPVVENVLNEALAAWFEEHPSEAKVIVGKVIEAAAAREAARKARELTRRKG 411

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR  QAVLPLRGKILNV  A
Sbjct: 412 ALDIASLPGKLADCQERDPSKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERA 471

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
             +K+  ++QI  L+ ALG        +   LRY K+I+MTDADVDGAHI +LLLTFF++
Sbjct: 472 RFDKMLGSEQIGTLITALGTGIGRDDFDLSKLRYHKIILMTDADVDGAHIRTLLLTFFFR 531

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +M  LIE   L++  PPL+++T+G    Y  DE   +  L
Sbjct: 532 QMPALIEGGFLYIAQPPLYKVTRGKSEQYLKDERALEDYL 571



 Score =  114 bits (284), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 4/79 (5%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            + E     G+  + + R+KGLGEM  SQL ET +D N R+LL+V++      + +  D 
Sbjct: 731 SLFEAVTDAGRKGVSLQRYKGLGEMNPSQLWETTLDTNARSLLQVKV----REVDEADDL 786

Query: 659 INKLMGTKADERFKFIQER 677
             KLMG   + R +FIQE 
Sbjct: 787 FTKLMGDVVEPRREFIQEN 805


>gi|330876358|gb|EGH10507.1| DNA gyrase subunit B [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 805

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 226/569 (39%), Positives = 342/569 (60%), Gaps = 19/569 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S +  YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I
Sbjct: 2   SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            + +  +  +TV DNGRGIPV+ H K    S  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  SIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+I F+P    F 
Sbjct: 121 GVSVVNALSELLLLTVRRSGKIWEQTYIHGVPQEPMKIVGE-SDSTGTQIHFKPSADTFK 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++   
Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++           G     VE A+ W +     +  + N I   +GGTH  G R 
Sbjct: 232 TNKTPVNEVFHFNVQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 289 ALTRNLNNYIEQEGLAKKYKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPGKL
Sbjct: 349 AVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 468

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++
Sbjct: 469 GTLITALGCGIGRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++  PPL+++ +G +  Y  D+E  ++ +
Sbjct: 529 YIAQPPLYKVKKGKQEQYIKDDEAMEEYM 557



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             ++ L         +  I R+KGLGEM   QL ET MD + R +L+V I   +      
Sbjct: 719 EFKQALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIG----A 774

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
               N LMG   + R  FI+  A  + ++ 
Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804


>gi|90420488|ref|ZP_01228395.1| DNA gyrase, subunit B [Aurantimonas manganoxydans SI85-9A1]
 gi|90335216|gb|EAS48969.1| DNA gyrase, subunit B [Aurantimonas manganoxydans SI85-9A1]
          Length = 811

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 233/586 (39%), Positives = 337/586 (57%), Gaps = 15/586 (2%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEV 89
            +    +  A+  Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE 
Sbjct: 2   SAIPETDPLANPEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEA 61

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
           +AG+A  + V+L+  G  TV DNGRGIP + H      S  E+I+T LHAGGKFD ++Y+
Sbjct: 62  LAGHATHVTVTLNPEGSCTVTDNGRGIPTDIH-TGEGVSAAEVIMTQLHAGGKFDQNSYK 120

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS +L + + R+  I    F+ G+P   LE      ++ GT ITF
Sbjct: 121 VSGGLHGVGVSVVNALSVKLSMKIRRKGKIHEMSFTHGVPDGSLEVTGDAGDETGTAITF 180

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P    F     FD   L    +  A+L+  V+   +  +   EK         ++ GGL
Sbjct: 181 LPSTDTFQGVTEFDYGTLEHRLRELAFLNSGVRIILTDKRHADEKVTE-----LFYEGGL 235

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           + +++     R  +  E      EK G     VE A+ W +     +  + N I   +GG
Sbjct: 236 EAFVRYLDRARKPLIPEPIVLYGEKDGI---VVEAALWWNDSYNESVLCFTNNIPQRDGG 292

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R  LTR +  YAE +   +   +    DD       +LSV + +P+F+ QTK K
Sbjct: 293 THMAGFRGGLTRQVTGYAETSGALKREKVTLTGDDCREGLSCVLSVKVPDPKFSSQTKDK 352

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIR 445
           LVS + +  VE+ + +    +  ++P E   ++  V+E +  R   RK      RK A+ 
Sbjct: 353 LVSSEVRPVVESLVNETLSTWFEEHPQEGKVVIAKVVEAASAREAARKARDLTRRKGALD 412

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC +     +E+FIVEGDSAGGSAK AR+R NQA+LPLRGKILNV  A  +
Sbjct: 413 ITSLPGKLADCQERDPAKSEIFIVEGDSAGGSAKGARSRKNQAILPLRGKILNVERARFD 472

Query: 506 KIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           ++  + QI  L+ ALG    + ++  E LRY K+IIMTDADVDGAHI +LLLTFF+++M 
Sbjct: 473 RMLGSDQIGTLITALGTSIGKDEFNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 532

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           +LIE+ ++++  PPL+++T+G +S Y  DE+  +  L E      G
Sbjct: 533 ELIERGYIYIAQPPLYKVTRGKQSQYLKDEKALENYLIEGGLDDAG 578



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 7/96 (7%)

Query: 593 DEEHKQ---KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDL 649
            E       ++L    + G+  + + R+KGLGEM   QL ET +D   RTL+ V+IN   
Sbjct: 719 TERELTGPLELLTAVFEVGRKGLTLQRYKGLGEMNPEQLWETTLDPEARTLVMVKINDAT 778

Query: 650 NSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
               D     ++LMG + + R +FIQE A  + ++ 
Sbjct: 779 ----DADQLFSRLMGDEVEPRREFIQEHALQVANLD 810


>gi|254374930|ref|ZP_04990411.1| hypothetical protein FTDG_01110 [Francisella novicida GA99-3548]
 gi|151572649|gb|EDN38303.1| hypothetical protein FTDG_01110 [Francisella novicida GA99-3548]
          Length = 627

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 243/642 (37%), Positives = 357/642 (55%), Gaps = 21/642 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY+A SI +L GL+PV+ RPGMY   T+ +  +HL  E+IDN++DEV+AG+A+ I ++L
Sbjct: 2   QNYNAKSIEVLTGLDPVKKRPGMY---TNTENPNHLIQEIIDNSVDEVLAGFASKINITL 58

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  + V D+GRG+PV+ HP+    S +E+I+T LH+GGKF N  Y  SGGLHGVG+SV
Sbjct: 59  YEDNSIEVADDGRGMPVDIHPEH-KMSGIELIMTKLHSGGKFSNKNYTHSGGLHGVGVSV 117

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  L   + R   ++   F  G     LE  + V +   GT+I F P+ K F D  
Sbjct: 118 VNALSTRLEAEIKRDGNVYHIVFEDGFKTKDLEIIDNVGKKNTGTKIRFWPNKKYFDDI- 176

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
             +   L  + ++KA L   +   +S + +        EK  ++F  GLK YL  KLE  
Sbjct: 177 KVNFKALKNLLEAKAILCKALTIKYSNEIK-------KEKLTWHFETGLKGYLDHKLEAE 229

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
           +L +            ++   V +            SY N I T + GTH +GL+  +  
Sbjct: 230 TLPAEPFMIDNFSNGDSYLDAV-FCWCEDPSESIKNSYVNLIPTPQDGTHVTGLKNGIYD 288

Query: 341 GIKKYAELTQNK-RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
            IK Y E      + I I ++D       ++SV I  P+FAGQTK KL + D    V  A
Sbjct: 289 AIKAYIEKNSLSVKNIKITANDSFAQLNYVISVKITNPQFAGQTKEKLSNKDVTNFVATA 348

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
           ++D    +L QNP EA +++E + + +++R+    ++   ++     +RLPGKL DC  +
Sbjct: 349 VKDLLTIWLNQNPDEARQIVENISKVAQKRI-NADKKTTRKRIMNTTIRLPGKLTDCISS 407

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
             + TELFIVEGDSAGGSAKQAR+++ QAVLPL+GKILN     ++ I N+Q+I ++  A
Sbjct: 408 DVNSTELFIVEGDSAGGSAKQARDKNFQAVLPLKGKILNSWELDADTIMNSQEIHNIATA 467

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           +G    S      LRY K+ I+ DAD DG HIA+LL   F +    LIE  H+++  PPL
Sbjct: 468 IGVDPDSDDI-SALRYNKICILADADSDGLHIATLLCAMFLKHFRKLIENGHIYIAQPPL 526

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           FRI  G  + YA DE  +  IL +  K   GK+ I RFKGLGEM  +QL+E+AMD + R 
Sbjct: 527 FRIDIGKSTFYALDENERDAILAKNSKL-PGKVNIMRFKGLGEMNPAQLRESAMDVSSRR 585

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           LL++ I+   +  +        L   +A +R  +++      
Sbjct: 586 LLQLTISDVYDDAEMLDML---LAKKRAKDRRDWLENYGDRA 624


>gi|94502204|ref|ZP_01308699.1| DNA gyrase subunit B [Oceanobacter sp. RED65]
 gi|94425665|gb|EAT10678.1| DNA gyrase subunit B [Oceanobacter sp. RED65]
          Length = 808

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 226/576 (39%), Positives = 346/576 (60%), Gaps = 16/576 (2%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S  +NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I
Sbjct: 2   STENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSEI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V +  +  ++V DNGRGIP + HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  RVVIHPDESISVSDNGRGIPTDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS++L +T+ R   ++ Q ++ G+P +PL +        GT I F P P+ F 
Sbjct: 121 GVSVVNALSNKLKMTIRRAGKVWEQSYTMGVPDAPLAEVGNT-ETSGTTIHFHPSPETFT 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F+   L K  +  ++L+  V+     ++   E       E F F GGLK++++   
Sbjct: 180 NIH-FNYDHLAKRLRELSFLNSGVRIVLKDERSDRE-------EVFEFEGGLKSFVEYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++                 VE A+ W +     I  + N I   +GGTH +G R 
Sbjct: 232 TNKTALNDIFHFQLEGDNREDGIGVEVAMQWNDSFSENIYCFTNNIPQRDGGTHLAGFRG 291

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  +S   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 292 ALTRSLNSYIEREGLAKKAKVSTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKS 351

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE  +   F+ +L++ P +A +++  +++ +  R   RK R    RK A+    LPGKL
Sbjct: 352 AVEQEMSRSFNDFLLEQPQQAKEIVSKMMDAARAREAARKAREMTRRKGALDVAGLPGKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +E+++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++
Sbjct: 412 ADCQEKDPSQSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEV 471

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC   R ++  + LRY  +IIMTDADVDG+HI +LLLTFF+++M ++IE+ H+
Sbjct: 472 GTLITALGCGIGREEFDPDKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMPEIIERGHV 531

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           F+  PPL++I +G    Y  D+   ++ L      G
Sbjct: 532 FIAQPPLYKIKRGKNEQYIKDDMALEEYLTSNALDG 567



 Score =  144 bits (362), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            +  L       +    I R+KGLGEM   QL ET MD   R +LRV I   +       
Sbjct: 723 FEGALAWLMGEARKGYSIQRYKGLGEMNPEQLWETTMDPEARRMLRVTIEDAV----AAD 778

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG + + R  FI+  A  +D++ 
Sbjct: 779 QIFTTLMGDEVEPRRDFIESNALLVDNLD 807


>gi|254373469|ref|ZP_04988957.1| topoisomerase IV [Francisella tularensis subsp. novicida GA99-3549]
 gi|151571195|gb|EDN36849.1| topoisomerase IV [Francisella novicida GA99-3549]
          Length = 627

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 243/642 (37%), Positives = 357/642 (55%), Gaps = 21/642 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY+A SI +L GL+PV+ RPGMY   T+ +  +HL  E+IDN++DEV+AG+A+ I ++L
Sbjct: 2   QNYNAKSIEVLTGLDPVKKRPGMY---TNTENPNHLIQEIIDNSVDEVLAGFASKINITL 58

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  + V D+GRG+PV+ HP+    S +E+I+T LH+GGKF N  Y  SGGLHGVG+SV
Sbjct: 59  YEDNSIEVADDGRGMPVDIHPEH-KMSGIELIMTKLHSGGKFSNKNYTHSGGLHGVGVSV 117

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  L   + R   ++   F  G     LE  + V +   GT+I F P+ K F D  
Sbjct: 118 VNALSTRLEAEIKRDGNVYHIVFEDGFKTKDLEIIDNVGKKNTGTKIRFWPNKKYFDDI- 176

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
             +   L  + ++KA L   +   +S + +        EK  ++F  GLK YL  KLE  
Sbjct: 177 KVNFKALKNLLEAKAILCKALTIKYSNEIK-------KEKLTWHFETGLKGYLDHKLEAE 229

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
           +L +            ++   V +            SY N I T + GTH +GL+  +  
Sbjct: 230 TLPAEPFMIDNFSNGDSYLDAV-FCWCEDPTESIKNSYVNLIPTPQDGTHVTGLKNGIYD 288

Query: 341 GIKKYAELTQNK-RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
            IK Y E      + I I ++D       ++SV I  P+FAGQTK KL + D    V  A
Sbjct: 289 AIKAYIEKNSLSVKNIKITANDSFAQLNYVISVKITNPQFAGQTKEKLSNKDVTNFVATA 348

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
           ++D    +L QNP EA +++E + + +++R+    ++   ++     +RLPGKL DC  +
Sbjct: 349 VKDLLTIWLNQNPDEARQIVENISKVAQKRI-NADKKTTRKRIMNTTIRLPGKLTDCISS 407

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
             + TELFIVEGDSAGGSAKQAR+++ QAVLPL+GKILN     ++ I N+Q+I ++  A
Sbjct: 408 DVNSTELFIVEGDSAGGSAKQARDKNFQAVLPLKGKILNSWELDADTIMNSQEIHNIATA 467

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           +G    S      LRY K+ I+ DAD DG HIA+LL   F +    LIE  H+++  PPL
Sbjct: 468 IGVDPDSDDI-SALRYNKICILADADSDGLHIATLLCAMFLKHFRKLIENGHIYIAQPPL 526

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           FRI  G  + YA DE  +  IL +  K   GK+ I RFKGLGEM  +QL+E+AMD + R 
Sbjct: 527 FRIDIGKSTFYALDENERDAILAKNSKL-PGKVNIMRFKGLGEMNPAQLRESAMDVSSRR 585

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           LL++ I+   +  +        L   +A +R  +++      
Sbjct: 586 LLQLTISDVYDDAEMLDML---LAKKRAKDRRDWLENYGDRA 624


>gi|239830977|ref|ZP_04679306.1| DNA gyrase, B subunit [Ochrobactrum intermedium LMG 3301]
 gi|239823244|gb|EEQ94812.1| DNA gyrase, B subunit [Ochrobactrum intermedium LMG 3301]
          Length = 826

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 229/577 (39%), Positives = 342/577 (59%), Gaps = 18/577 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           N  A   Y A SIR+L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+A 
Sbjct: 21  NSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAT 80

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
           L+ V+L+ +G  TV DNGRGIP + H K    S  E+I+T LHAGGKFD ++Y++SGGLH
Sbjct: 81  LVTVTLNPDGSCTVTDNGRGIPTDIH-KEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 139

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS  L + + R   I    F+ G+  +PL        + GT ++F P P+ 
Sbjct: 140 GVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGGETGTEVSFLPSPET 199

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     FD   L +  +  A+L+  V+   +  +              ++ GGL  +++ 
Sbjct: 200 FS-MVEFDFDTLERRLRELAFLNSGVRIKLADRRHADLVEHE-----LHYDGGLVEFVKY 253

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             +++  +  E    ++EK G    TVE A+ W +    ++  + N I   +GGTH +G 
Sbjct: 254 IDQSKKPLLEEPIYIRSEKDG---MTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGF 310

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  YA+ +    K  +++  DD       +LSV + +P+F+ QTK KLVS + 
Sbjct: 311 RGALTRQVTGYADASGMTKKEKVTLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEV 370

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
           +  VE+ + +    +L ++P     ++E VI+ +  R   RK R++ RK+ +    LPGK
Sbjct: 371 RPVVESLVNEALSTWLEEHPAGGKAVVEKVIQAAAAREAARKARDITRKSNLSVTSLPGK 430

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +     +E+FIVEGDSAGGSAK  R+R NQA+LPLRGKILNV     +++ ++ Q
Sbjct: 431 LADCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQ 490

Query: 513 IMDLVQALGCRT----RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +  L+ ALG          +  + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE
Sbjct: 491 VGTLITALGTSIGKDETHGFNPDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIE 550

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605
           + H+++  PPL+++++G  S Y  +E   +  L E  
Sbjct: 551 RGHIYIAQPPLYKVSRGKSSQYIKNEAAFEDFLIETG 587



 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 9/112 (8%)

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
              PP+ R       V          +L+     G+  + + R+KGLGEM A QL ET +
Sbjct: 723 FAEPPVLR---RKDKVETLSGP--MALLDAIFATGRKGLTLQRYKGLGEMNAEQLWETTL 777

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D N R+LL+V++        D     ++LMG + + R +FIQE A  + ++ 
Sbjct: 778 DPNVRSLLQVKVTDAT----DADSLFSRLMGDEVEPRREFIQENALSVANLD 825


>gi|332184662|gb|AEE26916.1| Topoisomerase IV subunit B [Francisella cf. novicida 3523]
          Length = 627

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 247/643 (38%), Positives = 359/643 (55%), Gaps = 21/643 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY+A SI +L GL+PV+ RPGMY   T+ +  +HL  E+IDN++DEV+AG+A+ I ++L
Sbjct: 2   QNYNAKSIEVLTGLDPVKKRPGMY---TNTENPNHLIQEIIDNSVDEVLAGFASKINITL 58

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  + V D+GRG+PV+ HP+    S +E+I+T LH+GGKF N +Y  SGGLHGVG+SV
Sbjct: 59  YEDNSIEVADDGRGMPVDIHPEH-KMSGIELIMTKLHSGGKFSNKSYTHSGGLHGVGVSV 117

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  L   + R   ++   F  G   S LE  + V +   GT+I F P+ K F D  
Sbjct: 118 VNALSTRLEAEIKRDGNVYHIVFEDGFKTSDLEIIDNVGKKNTGTKIRFWPNKKYFDDI- 176

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
             +   L  + ++KA L   +   +S + +        EK  ++F  GLK YL  KLE  
Sbjct: 177 KVNFKALKNLLEAKAILCKALTIKYSNEIK-------KEKLTWHFETGLKGYLDHKLEAE 229

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
           +L +            +    V +            SY N I T + GTH +GL+  +  
Sbjct: 230 TLPAEPFMIDNFSNGDSFLDAV-FCWCEDPTESIKNSYVNLIPTPQDGTHVTGLKNGVYD 288

Query: 341 GIKKYAELTQNK-RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
            IK Y E      + I I ++D       ++SV I  P+FAGQTK KL + D    V  A
Sbjct: 289 AIKAYIEKNSLSVKNIKITANDSFAQLNYVISVKITNPQFAGQTKEKLSNKDVTSFVATA 348

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
           +RD    +L QNP EA +++E + + +++R+    ++   ++     +RLPGKL DC  +
Sbjct: 349 VRDLLTIWLNQNPDEARQIVENISKVAQKRI-NADKKTTRKRIMNTAIRLPGKLTDCISS 407

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
             + TELFIVEGDSAGGSAKQAR+++ QAVLPL+GKILN     ++ I N+Q+I ++  A
Sbjct: 408 DVNSTELFIVEGDSAGGSAKQARDKNFQAVLPLKGKILNSWELDADTIMNSQEIHNIATA 467

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           +G    S      LRY K+ I+ DAD DG HIA+LL   F +    LIE  H+++  PPL
Sbjct: 468 IGVDPDSDDI-SGLRYNKICILADADSDGLHIATLLCAMFLKHFRKLIEYGHIYIAQPPL 526

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           FRI  G  + YA DE  K  IL +  K   GKI I RFKGLGEM  +QL+E+AMD + R 
Sbjct: 527 FRIDIGKSTFYALDENEKDTILAKNSKLS-GKINIMRFKGLGEMNPAQLRESAMDVSSRR 585

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           LL++ I+   +  +        L   +A +R  +++      +
Sbjct: 586 LLQLTISDVYDDAEMLDML---LAKKRAKDRRDWLENYGDRAE 625


>gi|319898232|ref|YP_004158325.1| DNA gyrase subunit B [Bartonella clarridgeiae 73]
 gi|319402196|emb|CBI75727.1| DNA gyrase subunit B [Bartonella clarridgeiae 73]
          Length = 809

 Score =  505 bits (1300), Expect = e-141,   Method: Composition-based stats.
 Identities = 229/565 (40%), Positives = 336/565 (59%), Gaps = 16/565 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +Y ASSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGYA L+ V+L
Sbjct: 12  DYGASSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYATLVNVTL 71

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G  +V DNGRGIP + HP     S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SV
Sbjct: 72  HADGSCSVRDNGRGIPTDIHP-TEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSV 130

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  L + + R   I    F+ G+  S L+      ++ GT ITF P  + F     
Sbjct: 131 VNALSVWLRLRIKRNGKIHEMSFTHGVADSALKIVGDCDSESGTEITFLPSSETFT-MVE 189

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F+   L +  +  A+L+  +    +  +    +         ++ GGL  +++   +++ 
Sbjct: 190 FNFETLERRLRELAFLNSGIHILLTDQRRADVQSVE-----LHYKGGLVEFVKHIDQSKR 244

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            +         EK G    +V+ A+ W +    ++  + N I   +GGTH +G R ALTR
Sbjct: 245 ALIDNPIYIANEKDGI---SVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRSALTR 301

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  YAE +    K  +++  DD       ILSV + +P+F+ QTK KLVS + +  VEN
Sbjct: 302 QINGYAESSGIAKKEKVNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVEN 361

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            + +    +L ++P EA   +  V+E +  R   RK RE   RK A+    LPGKLADC 
Sbjct: 362 LVNEGLSAWLEEHPNEAKIFISKVVEAAAAREAARKARELTRRKGALDITSLPGKLADCQ 421

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           +     +E+FIVEGDSAGGSAK  R+R NQA+LPLRGKILNV  A  +++ +++ I  L+
Sbjct: 422 ERDPTKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERARFDRMLSSEMIGTLI 481

Query: 518 QALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
            ALG          + +RY K+IIMTDADVDGAHI +LLLTFF+++M +LIE+ HL++  
Sbjct: 482 TALGTSIGKDEFSPDKVRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYIAQ 541

Query: 577 PPLFRITQGTKSVYAHDEEHKQKIL 601
           PPL+++++G    Y  +E   ++ L
Sbjct: 542 PPLYKVSRGKSFQYIKNEAAFEEFL 566



 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 4/86 (4%)

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
           +LE   K+GK  + + R+KGLGEM A QL ET +D + RTLL+V+IN       D     
Sbjct: 727 LLESIFKNGKKGLTLQRYKGLGEMNADQLWETTLDPDARTLLQVKINDAT----DADSLF 782

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
           ++LMG + + R  FIQ+ A  + ++ 
Sbjct: 783 SRLMGDEVEPRRAFIQDNALSVANLD 808


>gi|197311443|gb|ACH61925.1| DNA gyrase beta subunit [Acholeplasma sp. N93]
          Length = 549

 Score =  505 bits (1300), Expect = e-141,   Method: Composition-based stats.
 Identities = 225/563 (39%), Positives = 329/563 (58%), Gaps = 16/563 (2%)

Query: 67  GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           G T E+ LHHL  E++DN++DE +AGYA+ I+V +     + V DNGRGIPV+ HPK   
Sbjct: 1   GSTGERGLHHLVWEIVDNSIDEALAGYASTIKVEVLPGDIIQVTDNGRGIPVDIHPK-TG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           +  +E ILTTLHAGGKFD  +Y++SGGLHGVG SVVN LS    V + +  T + Q++  
Sbjct: 60  RPAVETILTTLHAGGKFDKGSYKVSGGLHGVGASVVNGLSTWYKVEIHKDGTAYEQRYEY 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           GIP   L+      +K GT  TF  DPKIF +   ++   L    Q  A+L+  +     
Sbjct: 120 GIPAYDLKIIGPT-DKTGTITTFLADPKIFTETTHYNIETLKNRIQQLAFLNKGLMITLI 178

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +          +E F++ GG+  Y+    +++S I  E+     E+ G    TVE A+
Sbjct: 179 DSR-----TEERYEETFHYEGGIIEYVHYLNQSKSKIHPEVIYIDKEQDGI---TVEIAL 230

Query: 307 AWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
            + +       S+ N I T EGG HE G ++ALTR + KYA+  + K+  +I  +D    
Sbjct: 231 QYVDSYSPNIYSFTNNISTTEGGMHEDGFKLALTRVLSKYADDQKMKKDDAISGEDTREG 290

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              I+SV   EP+F GQTKTKL + + +       ++  + +L++NP +A  ++E VI  
Sbjct: 291 LTAIISVKHPEPQFEGQTKTKLGNPEVRSITSQITQEALERFLLENPAQAKSIVEKVILA 350

Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           +  R+  RK +E   RK+ +  L    KLADC       +EL+IVEGDSAGGSAKQ R+ 
Sbjct: 351 TRARVAARKAKELTRRKSPLDALGFASKLADCRSKDPEKSELYIVEGDSAGGSAKQGRDS 410

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA+LPLRGK+LNV  A  +K+ NN++I++L+QA+G     ++     RY K++IMTDA
Sbjct: 411 EFQAILPLRGKVLNVEKARLDKMLNNKEIVNLIQAMGTGISDEFDITKSRYHKIVIMTDA 470

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           DVDGAHI +LLLTF ++ M  LI+  +++   PPL++IT G   VYA+ +E    ++ + 
Sbjct: 471 DVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYKITWGKNLVYAYSDEEMNAVVAK- 529

Query: 605 KKHGKGKIEISRFKGLGEMLASQ 627
               + K  I R+KGLGEM A Q
Sbjct: 530 ---AESKPSIQRYKGLGEMNAEQ 549


>gi|304570783|ref|YP_002515534.2| DNA gyrase subunit B [Caulobacter crescentus NA1000]
          Length = 821

 Score =  505 bits (1300), Expect = e-141,   Method: Composition-based stats.
 Identities = 232/605 (38%), Positives = 349/605 (57%), Gaps = 26/605 (4%)

Query: 20  SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLF 78
           +E  +       +P    + A+  Y A SI++L+GL+ VR RPGMYIG TD+   LHH+ 
Sbjct: 2   TENTEDQVPDLSTPEMTTEEAAAQYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMV 61

Query: 79  SEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLH 138
            EV+DNA+DE +AG+A  ++V L+ +G +TV D+GRGIPV+ H +    S  E+I+T LH
Sbjct: 62  YEVVDNAIDEALAGHATKVQVILNADGSVTVTDDGRGIPVDMH-EGEGVSAAEVIMTQLH 120

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD ++Y++SGGLHGVG+SVVNALSD L + + R   +   +F RG  ++ L+    
Sbjct: 121 AGGKFDQNSYKVSGGLHGVGVSVVNALSDWLELLIHRNGKVHQMRFERGDAVTSLKVTGD 180

Query: 199 V----------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
                          GT +TF P    F     FD   L    +  A+L+  V   +   
Sbjct: 181 SPVRTEGPKAGETLTGTEVTFFPSKDTFA-FIEFDRKTLEHRLRELAFLNSGVTIWFKDH 239

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +++      P +E+ ++ GG++ +++   + ++ +       K  K       ++ A+ W
Sbjct: 240 RDV-----EPWEEKLFYEGGIEAFVRHLDKAKTPLLKAPIAVKGVKDKV---EIDLALWW 291

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
            +    ++  + N I   +GGTH S  R ALTR I  YAE +    K  +S+  +D    
Sbjct: 292 NDSYHEQMLCFTNNIPQRDGGTHLSAFRAALTRIITSYAESSGILKKEKVSLGGEDSREG 351

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              +LSV + +P+F+ QTK KLVS + +  VE  + +    +  ++P EA  ++  + E 
Sbjct: 352 LTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGLVSEGLSTWFEEHPNEAKAIVTKIAEA 411

Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           +  R   RK RE   RK+A+    LPGKLADCS+     +E+FIVEGDSAGGSAKQARNR
Sbjct: 412 AAAREAARKARELTRRKSALDITSLPGKLADCSERDPAKSEIFIVEGDSAGGSAKQARNR 471

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTD 543
            NQAVLPLRGKILNV  A  +K+ ++ QI  L+ ALG    R  +  + +RY K+++MTD
Sbjct: 472 DNQAVLPLRGKILNVERARFDKMLSSDQIGTLITALGAGIGRDDFNPDKVRYHKIVLMTD 531

Query: 544 ADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEE 603
           ADVDGAHI +LLLTFFY++M +LIE+ ++++  PPL++ ++G  S Y  D+      L +
Sbjct: 532 ADVDGAHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKASKGKSSRYLKDDAEMDAFLVD 591

Query: 604 FKKHG 608
               G
Sbjct: 592 EGVDG 596



 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 4/84 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            ++      G+  + I R+KGLGEM   QL ET +DA  RTLL+V +N       D  D 
Sbjct: 739 DLVNAVLDAGRKGLTIQRYKGLGEMNPDQLWETTLDAEARTLLQVRVNH----ADDADDM 794

Query: 659 INKLMGTKADERFKFIQERASFID 682
            ++LMG   + R +FIQE A   +
Sbjct: 795 FSRLMGDLVEPRREFIQENALDAE 818


>gi|254283642|ref|ZP_04958610.1| DNA gyrase, B subunit [gamma proteobacterium NOR51-B]
 gi|219679845|gb|EED36194.1| DNA gyrase, B subunit [gamma proteobacterium NOR51-B]
          Length = 810

 Score =  505 bits (1300), Expect = e-141,   Method: Composition-based stats.
 Identities = 236/583 (40%), Positives = 347/583 (59%), Gaps = 20/583 (3%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAG 92
           +     + + YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  E++DN++DE +AG
Sbjct: 2   SETTGDSMNEYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFELVDNSIDEALAG 61

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           + + I+V +  +  +TV D+GRGIP E H      S  E+I+T LHAGGKFD++TY++SG
Sbjct: 62  HCSQIDVIIHPDESVTVADDGRGIPTETHE--EGVSAAEVIMTVLHAGGKFDDNTYKVSG 119

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS+ L +T+ RQN ++ Q +  G+P SPL    +     GT + F+P 
Sbjct: 120 GLHGVGVSVVNALSEHLQLTIRRQNKLYEQIYRHGVPDSPLAVVGETTE-TGTAVRFKPS 178

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P+ F +   F    L K  +  A+L+  VK     ++         + E + + GGL  +
Sbjct: 179 PETFTNI-EFHFDVLGKRLRELAFLNSGVKIVLKDERS-------GKSETYAYDGGLHAF 230

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           +Q    N++ I+           G     VE A+ W +     I  Y N I   +GGTH 
Sbjct: 231 VQFLNSNKTPINGVFHFMTEVDGGV---GVEVALQWNDSFQENIFCYTNNIPQRDGGTHL 287

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS
Sbjct: 288 AGFRSALTRTLNNYIEREGLAKKAKVNTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVS 347

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLR 448
            + +  VE  +   F  +L++NP EA  ++  +++ +  R   RK      RK A+    
Sbjct: 348 SEVKTAVEQTMGAAFADFLLENPAEAKLVVGKMLDAARAREAARKARDMTRRKGALDIAG 407

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADC +      EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ 
Sbjct: 408 LPGKLADCQERDPALCELYLVEGDSAGGSAKQGRNRKFQAILPLKGKILNVEKARFDKML 467

Query: 509 NNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
           ++Q++  +V ALGC   +S++  + LRY  +IIMTDADVDG+HI +LLLTFF+++M +LI
Sbjct: 468 SSQEVGTMVTALGCGIGKSEFDPDKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMRELI 527

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           E+ H+F+  PPL++I++G  S Y  DE   ++ L E    G G
Sbjct: 528 ERGHVFIAQPPLYKISRGKSSQYLKDEPALERYLTEGALDGAG 570



 Score =  144 bits (362), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 7/103 (6%)

Query: 583 TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLR 642
            +G K +   D     + L       +    I R+KGLGEM   QL ET MD   R +LR
Sbjct: 714 KRGEKVLETTD---FTEGLTWLLSEARKGYSIQRYKGLGEMNPDQLWETTMDPEHRRMLR 770

Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           V+I   +            LMG   + R +FI+  A  ++++ 
Sbjct: 771 VKIEDAI----LADQMFTTLMGDDVEPRREFIEANALAVENLD 809


>gi|171463638|ref|YP_001797751.1| ATP-binding region ATPase domain protein [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171193176|gb|ACB44137.1| ATP-binding region ATPase domain protein [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 662

 Score =  505 bits (1300), Expect = e-141,   Method: Composition-based stats.
 Identities = 237/674 (35%), Positives = 349/674 (51%), Gaps = 44/674 (6%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
               +  Y  SSI++L+GLEPVR R GMY   T      H+  EV+DNA DE + G+   
Sbjct: 2   ATRKTSEYSESSIQVLKGLEPVRQRSGMY---TRTDNPLHIIQEVLDNASDEALGGFGKQ 58

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGG 153
           I V++  +G ++V D+GRGIPV  HP       +EI+ T LHAGGKF+      Y  SGG
Sbjct: 59  IIVTMHTDGSVSVEDDGRGIPVGMHP-TEKLPVVEIVFTQLHAGGKFEKGTGGAYAFSGG 117

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRP 211
           LHGVG+SV NALS  L VTV R     +  F+ G  +  L+     +     GTR+   P
Sbjct: 118 LHGVGVSVTNALSKRLEVTVWRDGQKSTLTFADGKVIEKLKSNPSPKEDKSHGTRVRAWP 177

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           D K F   A      L+++ +SKA L   VK     +K         + + + +  GL+ 
Sbjct: 178 DGKYFDGLAIPIPE-LIRLLRSKAVLLPGVKVTLIQEKS-------GDTQTWQYAQGLRG 229

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVE----------WAIAWCEENPEITSYCNT 321
           YL   +      +  I   + E+  T  G  +                +  P   SY N 
Sbjct: 230 YLNEAIAQAGHGAEVISPFEGEQYATGSGDNDSFAEGEGAAWVVCWTEDGAPVRESYVNL 289

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFA 380
           I T  GGTHESGLR  L   +K + E+     + + ++ +D+   A  ILS  + +P+F 
Sbjct: 290 IPTPAGGTHESGLREGLFNAVKGFIEMHALQPKGVKLMPEDVFARASFILSAKVLDPQFQ 349

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQ K +L S DA R V   ++   + +L Q+     KL + VI++++ R R  ++ E  +
Sbjct: 350 GQIKERLNSRDAVRLVSGYVKSALELWLNQHVDYGRKLADLVIKQAQARTRAGQKVEKKK 409

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
            + +  L  PGKL DC        E+F+VEGDSAGGSAK  RN+  QA+LPLRGK+LN  
Sbjct: 410 SSGVAVL--PGKLTDCESQDISMNEIFLVEGDSAGGSAKMGRNKEYQAILPLRGKVLNTW 467

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLT 557
            A  +++  N ++ D+  A+G          D   LRY KV I++DADVDGAHI  LLLT
Sbjct: 468 EAERDRLFANNEVHDIAVAIGVDPHGFNDNPDLSNLRYGKVCILSDADVDGAHIQVLLLT 527

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRI------TQGTKSVYAHDEEHKQKILEEFKKHG--K 609
            FY+    LI+  H+++  PPLFR+       +  + +YA D    Q I ++ +K G  +
Sbjct: 528 LFYKHFPKLIDLGHVYISRPPLFRVDAPARDKKPAQKIYALDANELQAIEDKLRKDGVKE 587

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KAD 668
              +ISRFKGLGEM A QL +T ++ + R LL V +        +T  +++ LMG  ++ 
Sbjct: 588 AAWQISRFKGLGEMSAEQLWDTTLNPDTRRLLPVTLGTWTED--ETFKTMDMLMGKSESG 645

Query: 669 ERFKFIQERASFID 682
            R  + +ER + ++
Sbjct: 646 ARRDWFEERGNEVE 659


>gi|119713347|gb|ABL97411.1| DNA topoisomerase IV subunit B [uncultured marine bacterium
           EB80_02D08]
          Length = 631

 Score =  505 bits (1300), Expect = e-141,   Method: Composition-based stats.
 Identities = 244/647 (37%), Positives = 361/647 (55%), Gaps = 22/647 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A ++YDA +I +L GL+PVR RPGMY   TD    +HL  EV+DN++DE ++GY + I+V
Sbjct: 2   AKNSYDAQAIEVLSGLDPVRKRPGMY---TDTSNPNHLIQEVLDNSVDEALSGYCSNIKV 58

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           S+  +GF+ V D+GRG+P++ HP+    S +E+IL  LHAG KF    Y  SGGLHGVG+
Sbjct: 59  SVMKDGFIKVSDDGRGMPIDEHPEH-KVSGVELILCKLHAGAKFSGDDYNFSGGLHGVGV 117

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           SVVNALSDEL V V R +  +   F+ G  +S LE    V     GT I F+P+P  F  
Sbjct: 118 SVVNALSDELEVRVKRSSKEYQISFNNGEKVSELEPIGDVGPRNSGTSIKFKPNPSYFET 177

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
                  +L  + ++KA L   +   +  +K+  +K      + +YF  GLKTYL    E
Sbjct: 178 T-EIQIKKLKHLLKAKAVLCPGLTIDFVNEKKSDDK------QRWYFEDGLKTYLIESSE 230

Query: 279 NRSLISSEIFTGKTEKKG-THRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337
              LI  +      +         V W++    +N    +Y N I T +GG+H +G +  
Sbjct: 231 GADLILQDSIVCSKKSDAQELEFAVNWSL-RTPKNKLDETYVNLIPTAQGGSHLNGFKSG 289

Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           +   IK++ +      + + I +DD++ SA+ I+S  ++ P+FAGQTK +L S D    V
Sbjct: 290 ILDSIKEFCDYRNLLPKGLKINADDVLNSAIFIISSKLQNPQFAGQTKERLDSKDHMSFV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
            +  +D    +L  +  E  K+ E  I  ++ R +     E  +    R   LPGKL+DC
Sbjct: 350 ASTTKDILSIWLNTHTEEGEKIAELAIMSAQTRAKVSNIVERKKT--FRGPALPGKLSDC 407

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR RS QA++PLRGKILN     S +I  +Q+I +L
Sbjct: 408 NSQDLNETELFLVEGDSAGGSAKQARERSFQAIMPLRGKILNTWDLESTEIIKSQEIKNL 467

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    +      LRY K+ I+ DAD DG HIA+LL   F +    L+++  +++  
Sbjct: 468 STAIGVLPGNNDL-SSLRYGKICILADADSDGLHIATLLCALFLRHYKSLVQEGRIYISM 526

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
           PPL+RI      +YA D+  + +I+ EF KK GK KI I RFKGLGEM   QL+ET MD 
Sbjct: 527 PPLYRIDSAKDVLYALDDNQRDEIVAEFKKKKGKPKINIQRFKGLGEMNPPQLRETVMDP 586

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
             R L+++ I+   N+       ++K     A  R ++++++ S   
Sbjct: 587 LTRQLVQLSISSSDNANSMMDLLLSK---KNASARKEWLEKKGSLAK 630


>gi|28572427|ref|NP_789207.1| DNA topoisomerase IV subunit B [Tropheryma whipplei TW08/27]
 gi|28410558|emb|CAD66944.1| DNA gyrase subunit B [Tropheryma whipplei TW08/27]
          Length = 662

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 235/674 (34%), Positives = 337/674 (50%), Gaps = 39/674 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           S++ +Y+A  I +LEGL  VR RPGMYIG TD   L H   E+IDN++DEV+AG+ N++ 
Sbjct: 2   SSNTDYNADDIALLEGLAAVRKRPGMYIGSTDNHGLAHCLWEIIDNSVDEVLAGFGNVVN 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           ++L G+   +V D GRGIPV+   K    + +E++ T LHAGGKF    Y  SGGLHGVG
Sbjct: 62  ITLHGDNSFSVQDFGRGIPVDIESK-TGLTGVELVFTKLHAGGKFGTGAYFTSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS++L V V R    +  +F   +      K +   N  GTR+ F PDP IFG 
Sbjct: 121 ASVVNALSEKLSVEVDRDGMTWVMEFRNQVTSGLRSKCKIASNVTGTRVRFWPDPLIFGS 180

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
            A      L +     A+L   ++          E   + +   + F GG K +++    
Sbjct: 181 -AEICIESLHQRAMQTAFLVPGLRV-------NIEDRVLGKSSSYLFEGGCKQFVEHLSA 232

Query: 279 NRSLISSEIFTGKTE----------------KKGTHRGTVEWAIAWCEENPEIT-SYCNT 321
              +       GK                          V+ A+AW  +      S+ N 
Sbjct: 233 GELITDVLCIRGKGSFSEAVPVLKETGNLVISSVERVCDVDIALAWRNDFETHINSFVNV 292

Query: 322 ILTDEGGTHESGLRVALTRGI-KKYAELTQNKRAISIISDDL--MISAVGILSVFIREPE 378
           I T +GGTH SG   AL + I    +  ++  ++ +   +          ++SV + EP+
Sbjct: 293 IETPKGGTHYSGFEQALLKTIRNAVSSQSRYLKSGNNRPEREDVFSGLTAVVSVKLPEPQ 352

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLV--QNPIEATKLLEWVIERSEERLRRRKQR 436
           F GQTK  L +   +  V N + D         +   +  ++LE V+ +   RL  R  R
Sbjct: 353 FEGQTKEVLGTPAVKGIVANIVADNLQKLFEDPKYKTQIRRVLEKVVAQMHFRLAARASR 412

Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E   RK A+    LP KL DC  N  + +ELFIVEGDSA G+A++ARN   QA+LP+RGK
Sbjct: 413 ETQRRKNALETSSLPAKLVDCRSNDVNESELFIVEGDSALGTARRARNSEYQALLPIRGK 472

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLL 555
           ILNV  A       N +   ++Q +G  + S +     RY KVIIM+DADVDGAHI  LL
Sbjct: 473 ILNVQKASVADALANAECASIIQVIGAGSGSNFDIAQARYGKVIIMSDADVDGAHIRILL 532

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFR--ITQGTKSVYAHDEEHKQKILEEFKKHG-KGKI 612
           LT F++ M  +I    +F   PPL R  +    + +Y   +   + +L   K+ G + + 
Sbjct: 533 LTLFFRYMQPMISSGRVFSALPPLHRVVVKNSNEKIYTRSDRELEMVLSRLKQEGLEHRE 592

Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
            I R+KGLGEM A QL ET MD +KRTLLR+ ++      +   D    LMG     R +
Sbjct: 593 PIQRYKGLGEMDADQLAETTMDRSKRTLLRIRMSD----AQQASDIFALLMGNDVAPRRE 648

Query: 673 FIQERASFIDDVGT 686
           FI       D + +
Sbjct: 649 FIANSVVSTDRIDS 662


>gi|262281565|ref|ZP_06059344.1| type IIA topoisomerase [Acinetobacter calcoaceticus RUH2202]
 gi|262257024|gb|EEY75763.1| type IIA topoisomerase [Acinetobacter calcoaceticus RUH2202]
          Length = 822

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 225/581 (38%), Positives = 345/581 (59%), Gaps = 19/581 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85
                S +   Q+    YD+SSI++L GL+ VR RPGMYIG TD+   LHH+  EV+DNA
Sbjct: 2   SSESQSASQTEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNA 61

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AG+ + I V++  +  ++V DNGRGIP + HP+    S  E+ILT LHAGGKFD+
Sbjct: 62  IDEALAGHCDEIIVTIHEDESVSVSDNGRGIPTDIHPE-EGVSAAEVILTILHAGGKFDD 120

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +LH+ ++R   +  Q++  G P  PL    +  +K GT
Sbjct: 121 NSYKVSGGLHGVGVSVVNALSSKLHLMISRAGQVHEQEYQHGDPQYPLRVIGET-DKSGT 179

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            + F P  ++   +  F+   L +  +  ++L+  V+     ++   E         + +
Sbjct: 180 TVRFWPS-ELTFTQTIFNVEILARRLRELSFLNAGVRIVLRDERINLE-------HVYDY 231

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GGL  +++   E ++ ++           G     VE A+ W E     +  + N I  
Sbjct: 232 EGGLSEFVKYINEGKTHLNEIFHFTADTDSGI---GVEVALQWNESYQENVRCFTNNIPQ 288

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GG+H +G R ALTRG+ +Y E      K  +++  DD       I+SV + +P+F+ Q
Sbjct: 289 KDGGSHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQ 348

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441
           TK KLVS + +  VE A+   F  YL++NP  A  +   +I+ +  R   RK      RK
Sbjct: 349 TKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRK 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           +A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  
Sbjct: 409 SALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +K+ ++Q++  L+ ALGC   R +Y  + LRY K+IIMTDADVDG+HI +LLLTFF+
Sbjct: 469 ARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFF 528

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++M +L+E+ ++++  PPL+++ +G +  Y  D +  +  L
Sbjct: 529 RQMPELVERGYIYIAQPPLYKLKKGKQEQYIKDNDALENYL 569



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 17/126 (13%)

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           +  + L+E    +L         +G + +      +  ++ +   +  +  + I R+KGL
Sbjct: 714 KSWFSLLEDG-AYL--------QKGDRRIQV---ANFHQVWQHILQDSRRGMMIQRYKGL 761

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GEM A QL ET MD   R +L+V I+  +    +     + LMG   + R  FI+E A  
Sbjct: 762 GEMNAEQLWETTMDPENRHMLQVTIDDAI----EADRMFSCLMGDDVEPRRAFIEENALN 817

Query: 681 IDDVGT 686
            D +  
Sbjct: 818 AD-IDA 822


>gi|115522035|ref|YP_778946.1| DNA gyrase subunit B [Rhodopseudomonas palustris BisA53]
 gi|115515982|gb|ABJ03966.1| DNA gyrase subunit B [Rhodopseudomonas palustris BisA53]
          Length = 813

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 245/580 (42%), Positives = 335/580 (57%), Gaps = 14/580 (2%)

Query: 26  SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDN 84
           +       A +  +A   Y A SIR+L+GL+ VR RPGMYIG TD+   LHH+  EV+DN
Sbjct: 2   TEPARQPVAESEPAAPIEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDN 61

Query: 85  AMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144
           A+DE +AG+A  +EV L+ +G +TV D+GRGIPV+ H K    S  E+I+T LHAGGKFD
Sbjct: 62  AIDEALAGHATRVEVVLNADGSVTVRDDGRGIPVDIH-KGEGISAAEVIMTQLHAGGKFD 120

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS +L + V R       +F+ G  ++PL        KRG
Sbjct: 121 QNSYKVSGGLHGVGVSVVNALSSKLQLRVWRNGKEHFIEFAHGDAVAPLVVVGDSNGKRG 180

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF   P+ F     +D A L    +  A+L+  V    S  +   EK      EE  
Sbjct: 181 TEVTFLASPETFT-HIEYDFATLEHRLRELAFLNSGVNILLSDMRHAVEKR-----EEMR 234

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+  +++    N+  +         E  G     VE A+ W +   E    + N I 
Sbjct: 235 YEGGVVEFVKYLDRNKKAMVPAPIMIAAELNGI---GVEAALWWNDSYHENVLCFTNNIP 291

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
             +GGTH +G R ALTR +  YAE    K  I++  DD       +LSV + +P+F+ QT
Sbjct: 292 QRDGGTHLAGFRGALTRQVNGYAEGIAKKEKIALTGDDCREGLTAVLSVKVPDPKFSSQT 351

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKT 442
           K KLVS + +  VEN L +    +  ++P EA  ++  V+E +  R   RK RE   RK 
Sbjct: 352 KDKLVSSEVRPVVENVLNEALAAWFEEHPSEAKTIVGKVVEAAAAREAARKARELTRRKG 411

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR  QAVLPLRGKILNV  A
Sbjct: 412 ALDIASLPGKLADCQERDPAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERA 471

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
             +K+  ++QI  L+ ALG        +   LRY K+I+MTDADVDGAHI +LLLTFF++
Sbjct: 472 RFDKMLGSEQIGTLITALGTGIGRDDFDLAKLRYHKIILMTDADVDGAHIRTLLLTFFFR 531

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +M  LIE   L++  PPL+++T+G    Y  DE   +  L
Sbjct: 532 QMPSLIEGGFLYIAQPPLYKVTRGKSEQYLKDERALEDYL 571



 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 5/87 (5%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            + E     G+  + + R+KGLGEM  SQL ET +D N R+LL+V++      + +  D 
Sbjct: 731 SLFEAVTDAGRKGVALQRYKGLGEMNPSQLWETTLDTNARSLLQVKV----REVDEADDI 786

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R  FIQE +    +V 
Sbjct: 787 FTKLMGDVVEPRRDFIQENSLSA-NVD 812


>gi|86747132|ref|YP_483628.1| DNA gyrase subunit B [Rhodopseudomonas palustris HaA2]
 gi|86570160|gb|ABD04717.1| DNA gyrase subunit B [Rhodopseudomonas palustris HaA2]
          Length = 813

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 245/582 (42%), Positives = 337/582 (57%), Gaps = 16/582 (2%)

Query: 24  KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVI 82
            +    P +   +   A   Y A SIR+L+GL+ VR RPGMYIG TD+   LHH+  EV+
Sbjct: 2   TEPARQPIAETPSPVPAE--YGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVV 59

Query: 83  DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142
           DNA+DE +AG+A  +EV L+ +G +TV D+GRGIPV+ H K    S  E+I+T LHAGGK
Sbjct: 60  DNAIDEALAGHATAVEVVLNADGSVTVRDDGRGIPVDIH-KGEGISAAEVIMTQLHAGGK 118

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD ++Y++SGGLHGVG+SVVNALS +L + V R       +F+ G  ++PL        +
Sbjct: 119 FDQNSYKVSGGLHGVGVSVVNALSSKLVLRVWRNGKEHIIEFAHGDAVAPLSVVGDANGR 178

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
           RGT +TF   P+ F     +D A L    +  A+L+  V    S  +   EK      EE
Sbjct: 179 RGTEVTFFASPETFT-HIEYDFATLEHRLRELAFLNSGVNIVLSDMRHPVEKR-----EE 232

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNT 321
             + GG+  +++    N+  +         +  G     VE A+ W E   E    + N 
Sbjct: 233 MRYEGGVTEFVKYLDRNKKPMVPAPIVLAADLNGI---GVEAALWWNETYHENVLCFTNN 289

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
           I   +GGTH +G R ALTR +  YA+    K  I++  DD       +LSV + +P+F+ 
Sbjct: 290 IPQRDGGTHLAGFRAALTRQVNGYADSNAKKEKIALTGDDCREGLTAVLSVKVPDPKFSS 349

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTK KLVS + +  VEN L +    +  ++P EA  ++  VIE +  R   RK RE   R
Sbjct: 350 QTKDKLVSSEVRPVVENVLNEALAAWFEEHPAEAKVIVGKVIEAAAAREAARKARELTRR 409

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR  QAVLPLRGKILNV 
Sbjct: 410 KGALDIASLPGKLADCQERDPSKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVE 469

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
            A  +K+  ++QI  L+ ALG    R  +    LRY K+I+MTDADVDGAHI +LLLTFF
Sbjct: 470 RARFDKMLGSEQIGTLITALGTGIGRDDFDIAKLRYHKIILMTDADVDGAHIRTLLLTFF 529

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +++M  LIE   L++  PPL+++T+G    Y  DE   ++ L
Sbjct: 530 FRQMPALIEGGFLYIAQPPLYKVTRGKSEQYLKDERALEEYL 571



 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 4/79 (5%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            + E     G+  + + R+KGLGEM  SQL ET +D N R+LL+V++      + +  D 
Sbjct: 731 SLFEAVTDAGRKGVALQRYKGLGEMNPSQLWETTLDTNARSLLQVKV----REVDEADDI 786

Query: 659 INKLMGTKADERFKFIQER 677
             KLMG   + R +FIQE 
Sbjct: 787 FTKLMGDVVEPRREFIQEN 805


>gi|39933084|ref|NP_945360.1| DNA gyrase subunit B [Rhodopseudomonas palustris CGA009]
 gi|39652709|emb|CAE25448.1| DNA gyrase subunit B [Rhodopseudomonas palustris CGA009]
          Length = 813

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 245/580 (42%), Positives = 340/580 (58%), Gaps = 14/580 (2%)

Query: 26  SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDN 84
           +       A +   A   Y A SIR+L+GL+ VR RPGMYIG TD+   LHH+  EV+DN
Sbjct: 2   TEPARQPSAESVHPAPAEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDN 61

Query: 85  AMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144
           A+DE +AG+A+ +EV L+ +G +TV D+GRGIPV+ H K    S  E+I+T LHAGGKFD
Sbjct: 62  AIDEALAGHASRVEVILNADGSVTVRDDGRGIPVDIH-KGEGVSAAEVIMTQLHAGGKFD 120

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS +L + V R +     +F+ G  ++PL+       KRG
Sbjct: 121 QNSYKVSGGLHGVGVSVVNALSSKLLLRVWRNDKEHYIEFAHGDAVAPLKVVGDANGKRG 180

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF    + F     +D A L    +  A+L+  V    S  +   EK      EE  
Sbjct: 181 TEVTFYASAETFT-HIEYDFATLEHRLRELAFLNSGVYIVLSDMRHAVEKR-----EEMR 234

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+  +++    N+  I         E  G     VE A+ W +   E    + N I 
Sbjct: 235 YEGGVTEFVKYLDRNKKPIVPTPVVIGAELNGIM---VEAALWWNDTYHENVLCFTNNIP 291

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
             +GGTH +G R ALTR I  YAE    K  +++  DD       +LSV + +P+F+ QT
Sbjct: 292 QRDGGTHLAGFRAALTRQITGYAEAGSKKEKVALTGDDCREGLTAVLSVKVPDPKFSSQT 351

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKT 442
           K KLVS + +  VEN + +    +L ++P EA  ++  V+E +  R   RK RE   RK 
Sbjct: 352 KDKLVSSEVRPVVENVINEALAAWLEEHPSEAKIVIGKVVEAAAAREAARKARELTRRKG 411

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR  QAVLPLRGKILNV  A
Sbjct: 412 ALDIASLPGKLADCQERDPAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERA 471

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
             +K+ +++QI  L+ ALG     +  +   LRY K+I+MTDADVDGAHI +LLLTFF++
Sbjct: 472 RFDKMLSSEQIGTLITALGTGIGREDFDLSKLRYHKIILMTDADVDGAHIRTLLLTFFFR 531

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +M  LIE  +L++  PPL+++T+G    Y  DE   +  L
Sbjct: 532 QMPALIEGGYLYIAQPPLYKVTRGKSEQYLKDERALEDYL 571



 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 4/79 (5%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            + E     G+  + + R+KGLGEM  SQL ET +D N R+LL+V++      + +  D 
Sbjct: 731 SLFEAVTDAGRKGVALQRYKGLGEMNPSQLWETTLDTNARSLLQVKV----REVDEADDI 786

Query: 659 INKLMGTKADERFKFIQER 677
             KLMG   + R +FIQE 
Sbjct: 787 FTKLMGDVVEPRREFIQEN 805


>gi|192288437|ref|YP_001989042.1| DNA gyrase subunit B [Rhodopseudomonas palustris TIE-1]
 gi|192282186|gb|ACE98566.1| DNA gyrase, B subunit [Rhodopseudomonas palustris TIE-1]
          Length = 813

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 245/580 (42%), Positives = 340/580 (58%), Gaps = 14/580 (2%)

Query: 26  SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDN 84
           +       A +   A   Y A SIR+L+GL+ VR RPGMYIG TD+   LHH+  EV+DN
Sbjct: 2   TEPARQPSAESVHPAPAEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDN 61

Query: 85  AMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144
           A+DE +AG+A+ +EV L+ +G +TV D+GRGIPV+ H K    S  E+I+T LHAGGKFD
Sbjct: 62  AIDEALAGHASRVEVILNADGSVTVRDDGRGIPVDIH-KGEGVSAAEVIMTQLHAGGKFD 120

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS +L + V R +     +F+ G  ++PL+       KRG
Sbjct: 121 QNSYKVSGGLHGVGVSVVNALSSKLLLRVWRNDKEHYIEFAHGDAVAPLKVVGDANGKRG 180

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF    + F     +D A L    +  A+L+  V    S  +   EK      EE  
Sbjct: 181 TEVTFYASAETFT-HIEYDFATLEHRLRELAFLNSGVYIVLSDMRHAVEKR-----EEMR 234

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+  +++    N+  I         E  G     VE A+ W +   E    + N I 
Sbjct: 235 YEGGVTEFVKYLDRNKKPIVPTPVVIGAELNGIM---VEAALWWNDTYHENVLCFTNNIP 291

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
             +GGTH +G R ALTR I  YAE    K  +++  DD       +LSV + +P+F+ QT
Sbjct: 292 QRDGGTHLAGFRAALTRQITGYAEAGSKKEKVALTGDDCREGLTAVLSVKVPDPKFSSQT 351

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKT 442
           K KLVS + +  VEN + +    +L ++P EA  ++  V+E +  R   RK RE   RK 
Sbjct: 352 KDKLVSSEVRPVVENVINEALAAWLEEHPSEAKIVIGKVVEAAAAREAARKARELTRRKG 411

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR  QAVLPLRGKILNV  A
Sbjct: 412 ALDIASLPGKLADCQERDPAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERA 471

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
             +K+ +++QI  L+ ALG     +  +   LRY K+I+MTDADVDGAHI +LLLTFF++
Sbjct: 472 RFDKMLSSEQIGTLITALGTGIGREDFDLSKLRYHKIILMTDADVDGAHIRTLLLTFFFR 531

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +M  LIE  +L++  PPL+++T+G    Y  DE   +  L
Sbjct: 532 QMPALIEGGYLYIAQPPLYKVTRGKSEQYLKDERALEDYL 571



 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 4/79 (5%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            + E     G+  + + R+KGLGEM  SQL ET +D N R+LL+V++      + +  D 
Sbjct: 731 SLFEAVTDAGRKGVALQRYKGLGEMNPSQLWETTLDTNARSLLQVKV----REVDEADDI 786

Query: 659 INKLMGTKADERFKFIQER 677
             KLMG   + R +FIQE 
Sbjct: 787 FTKLMGDVVEPRREFIQEN 805


>gi|157373150|ref|YP_001471750.1| DNA topoisomerase (ATP-hydrolyzing) [Shewanella sediminis HAW-EB3]
 gi|157315524|gb|ABV34622.1| DNA topoisomerase (ATP-hydrolyzing) [Shewanella sediminis HAW-EB3]
          Length = 813

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 226/583 (38%), Positives = 345/583 (59%), Gaps = 18/583 (3%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVI 90
           +    N  + ++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +
Sbjct: 2   NNRRENNMSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEAL 61

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AG+ N + +++  +G ++V D+GRGIPV  HP+    S  E+I+T LHAGGKFD+++Y++
Sbjct: 62  AGHCNDVIITIHADGSVSVKDDGRGIPVAIHPE-EGISAAEVIMTVLHAGGKFDDNSYKV 120

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS +L +T+ R   ++ Q ++ G P  P++      N  GT I F 
Sbjct: 121 SGGLHGVGVSVVNALSHKLQLTIRRDGKLYEQFYTHGEPDEPIKAIGDATN-TGTEIRFW 179

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P    F D   F    L K  +  ++L+  V      +++  +       E F + GG+ 
Sbjct: 180 PSTDTFTDVL-FHFDILAKRVRELSFLNSGVGVRLVDERDNRD-------EFFKYDGGIS 231

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            ++     N++ ++ E+F    E+      TVE A+ W +     I  + N I   +GGT
Sbjct: 232 AFVDYLNVNKTPVNKEVFHFIQERDD--GITVEVAMQWNDGFQENIFCFTNNIPQRDGGT 289

Query: 330 HESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R ALTR +  Y E      K       DD       ++SV + +P+F+ QTK KL
Sbjct: 290 HLAGFRGALTRNLNTYMEREGYNKKGKTGATGDDAREGLTAVISVKVPDPKFSSQTKDKL 349

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRK 446
           VS + +  VE  + +    YL+++P EA  ++  +I+ +  R   RK R    RK A+  
Sbjct: 350 VSSEVKSAVEQTMGEQLGDYLMEHPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDL 409

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 410 GGLPGKLADCQEKDPALSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 469

Query: 507 IRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           + ++Q++  L+ ALGC   R +Y  +  RY  ++IMTDADVDG+HI +LLLTFF+++M +
Sbjct: 470 MLSSQEVATLITALGCGIGRDEYDPDKTRYHNIVIMTDADVDGSHIRTLLLTFFFRQMPE 529

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           LIE+  +++  PPL+++ +G +  Y  D+    + L      G
Sbjct: 530 LIERGFVYIAQPPLYKVKKGKQEQYLKDDPALTEFLTNLALDG 572



 Score =  133 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           + L+      +  + I R+KGLGEM   QL ET MD   R +L V I   +         
Sbjct: 730 EALDWLMNDSRRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLVVTIEDAI----AADQL 785

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
              LMG + + R +FI+  A  + ++ 
Sbjct: 786 FTCLMGDQVEPRREFIESNALNVANLD 812


>gi|254500251|ref|ZP_05112402.1| DNA gyrase, B subunit [Labrenzia alexandrii DFL-11]
 gi|222436322|gb|EEE43001.1| DNA gyrase, B subunit [Labrenzia alexandrii DFL-11]
          Length = 820

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 239/581 (41%), Positives = 342/581 (58%), Gaps = 16/581 (2%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85
              P+  A         Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA
Sbjct: 7   MSTPEPGATPEAENGAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNA 66

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AG+A+ + V+L+ +G +TV DNGRGIP + H +    S  E+I+T LHAGGKFD 
Sbjct: 67  IDEALAGHADHVTVTLNPDGSVTVSDNGRGIPTDLHSE-EGVSAAEVIMTQLHAGGKFDQ 125

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +L + + R +      F+ G  + PLE       K+GT
Sbjct: 126 NSYKVSGGLHGVGVSVVNALSTKLDLRIWRNDQEHFMTFAHGDAVGPLEVVGPANGKKGT 185

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            +TF P  + F     FD   L    +  A+L+   +   +  + + +       EE ++
Sbjct: 186 EVTFLPSSETFTKT-EFDFGTLEHRLRELAFLNSGARIILTDKRGVED-----VVEELFY 239

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILT 324
            GGL+ +++     +  +       + EK G    TVE A+ W +   E    + N I  
Sbjct: 240 DGGLEAFVRYLDRAKHPLIETPIAVRAEKDGI---TVEAAMWWNDSYHEQVLCFTNNIPQ 296

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTR +  YAE T    K  +S+  DD       +LSV + +P+F+ Q
Sbjct: 297 RDGGTHLAGFRGALTRQVTGYAESTGLMKKEKVSLSGDDCREGLTCVLSVKVPDPKFSSQ 356

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TK KLVS + +  VEN +      +L +NP  A  ++  V+E +  R   RK RE   RK
Sbjct: 357 TKDKLVSSEVRPVVENLISQTLSEWLEENPAPAKTIVSKVVEAASAREAARKARELTRRK 416

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            A+    LPGKLADC +  A   ELF+VEGDSAGGSAKQ R+R NQAVLPLRGKILNV  
Sbjct: 417 GALDVASLPGKLADCQERDASKAELFLVEGDSAGGSAKQGRHRENQAVLPLRGKILNVER 476

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +K+ ++ +I  L+ ALG    + ++  E LRY K+IIMTDADVDGAHI +LLLTFF+
Sbjct: 477 ARFDKMLSSNEIGTLITALGTGIGKEEFNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFF 536

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++M +LIE  ++++  PPL+++ +G    Y  D+E  +  L
Sbjct: 537 RQMPELIENGYVYIAQPPLYKVKRGQSEQYLKDQEALENYL 577



 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 4/88 (4%)

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           + +L+     G+  I + R+KGLGEM   QL ET +D N R+LL+V++        D  D
Sbjct: 736 RALLQHIFAFGQKGISLQRYKGLGEMNPEQLWETTLDPNVRSLLQVKV----READDADD 791

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
              KLMG + + R +FIQ+ A  + ++ 
Sbjct: 792 IFTKLMGDEVEPRREFIQDNALAVANLD 819


>gi|149185061|ref|ZP_01863378.1| type IIA topoisomeraseB subunit [Erythrobacter sp. SD-21]
 gi|148831172|gb|EDL49606.1| type IIA topoisomeraseB subunit [Erythrobacter sp. SD-21]
          Length = 841

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 221/601 (36%), Positives = 352/601 (58%), Gaps = 27/601 (4%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85
            +     +  N    + YD+ SI++L+GL+ VR RPGMYIG TD+   LHH+  EV DNA
Sbjct: 1   MDENTPESGENAPKKNAYDSDSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNA 60

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-- 143
           +DE +AG+ +L+ + L+ +G ++V DNGRGIPV+ H K    S  E+I+T LHAGGKF  
Sbjct: 61  IDEALAGHCDLVLIELNADGSVSVEDNGRGIPVDMH-KEEGVSAAEVIMTQLHAGGKFEN 119

Query: 144 --DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
             D++ Y++SGGLHGVG+SVVNALS+ L + + R       +F  G  +  L        
Sbjct: 120 TSDDNAYKVSGGLHGVGVSVVNALSEWLELVIWRDGKEHWMRFEHGDAVESLRVVGDAPP 179

Query: 202 ----------KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
                     K+GTR+TF+   + F +   +D  +L    +  A+L+  V+     ++  
Sbjct: 180 VASNGDENGLKKGTRVTFKASEETFKNVIEYDFDKLEHRYRELAFLNSGVRILLRDNR-- 237

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT-HRGTVEWAIAWCE 310
                 P + + ++ GG+  +++    N+  + +E  +   EK+G      +EW  ++  
Sbjct: 238 ---PEEPLEHDLFYEGGIAAFVKYLDRNKQALVAEPISVSAEKEGIGIDVALEWNDSY-- 292

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVG 368
               +  + N I   +GGTH +  R ALTR +  YA  +    K  +S+  +D+      
Sbjct: 293 -YENVLCFTNNIPQRDGGTHLAAFRAALTRTLNNYATASGLMKKEKVSLSGEDMREGLTA 351

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           I+SV + +P+F  QTK KLVS + ++ +E+ + +    +L +NP +A ++++ VI+ +  
Sbjct: 352 IVSVKLPDPKFGSQTKDKLVSSEVRQPLESLMGEKMTEWLEENPNDAKQIIQKVIDAAAA 411

Query: 429 RLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
           R   R+ RE++RK A+    LPGKL+DC +  A   ELF+VEGDSAGGSAK  R+   QA
Sbjct: 412 REAARRAREMSRKGAMSIASLPGKLSDCRERDASKAELFLVEGDSAGGSAKNGRDSQYQA 471

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           +LPL+GKILNV  A  ++I +++++  L+QA+G   R ++  E LRY K++IMTDADVDG
Sbjct: 472 ILPLKGKILNVERARFDRIISSKEVGTLIQAMGTGLRDEFNLEKLRYHKIVIMTDADVDG 531

Query: 549 AHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           AHI +LLLTFF+++M ++++  HLF+  PPL+++T+G   VY  D+    + L E    G
Sbjct: 532 AHIRTLLLTFFHRQMPEIVKAGHLFIAQPPLYKVTRGKSEVYLKDQPAFDRYLIEAGLSG 591

Query: 609 K 609
           +
Sbjct: 592 R 592



 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           ++++     G+  +++SRFKGLGEM A QL ET +D   R LL+V++         T + 
Sbjct: 758 QLVDAVMAAGRKGLKVSRFKGLGEMDAEQLWETTLDPENRALLQVKVED----ADVTDEI 813

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             +LMG   + R +FIQ  A  + ++ 
Sbjct: 814 FTRLMGDVVEPRREFIQANALNVANLD 840


>gi|304394414|ref|ZP_07376337.1| DNA gyrase, B subunit [Ahrensia sp. R2A130]
 gi|303293854|gb|EFL88231.1| DNA gyrase, B subunit [Ahrensia sp. R2A130]
          Length = 858

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 242/607 (39%), Positives = 348/607 (57%), Gaps = 17/607 (2%)

Query: 4   DSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPG 63
           DS D                +K   + +       S S+ Y A SI++L+GL+ VR RPG
Sbjct: 17  DSDDFVCLRESAKTSPVFAARKDDRLTEPTPENTPSNSEEYGADSIKVLKGLDAVRKRPG 76

Query: 64  MYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122
           MYIG TD+   LHH+  EV+DN +DEV+AG+A+ + V+++ +G +TV DNGRGIPV+ H 
Sbjct: 77  MYIGDTDDGSGLHHMVYEVVDNGIDEVLAGHADAVNVTINNDGSVTVTDNGRGIPVDMHE 136

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
           +    S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALS  L + +AR +     
Sbjct: 137 E-EGMSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSVSLKLRIARNDKWHEI 195

Query: 183 KFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241
            F+ G+   PLE          GT +TF P  + F +   FD  RL    +  A+L+   
Sbjct: 196 SFTHGVSDGPLEIVGDAEAGYSGTELTFMPSSETFTNI-KFDFDRLEHRLRELAFLNSGC 254

Query: 242 KTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
           +   S D+  A+K         Y+ GGLK +++     +  +       K+E+ G    T
Sbjct: 255 RIILSDDRGGADKQTE-----LYYEGGLKEFVRYLDRAKGALIEAPIYLKSERDGI---T 306

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISII 358
           VE A+ W +     +  + N I   +GGTH +G R ALTR +  YA+      K  +S+ 
Sbjct: 307 VELALWWNDSYNENVLCFTNNIPQRDGGTHLAGFRGALTRQVTGYADAQGIIKKEKVSLT 366

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD       +LSV + +P+F+ QTK KLVS + +  VE  + +    +  +NP +A  +
Sbjct: 367 GDDCREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVEGLVNETLKEWFEENPADAKTV 426

Query: 419 LEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           +  V+E +  R   RK RE+ R+   +    LPGKLADC +     +E+FIVEGDSAGGS
Sbjct: 427 VSKVVEAATAREAARKARELTRRKGVLDIASLPGKLADCQEKDPALSEIFIVEGDSAGGS 486

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYE 536
           AKQ R+R NQA+LPLRGK+LNV  A  +K+ +++QI  L+ ALG          +  RY 
Sbjct: 487 AKQGRSRKNQAILPLRGKVLNVERARFDKMLSSEQIGTLITALGTGIGPDEFNLDKARYH 546

Query: 537 KVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEH 596
           KVIIMTDADVDGAHI +LLLTFF+++M +LIE+ +L++  PPL+ I +G    Y  DEE 
Sbjct: 547 KVIIMTDADVDGAHIRTLLLTFFFRQMPELIERGYLYIAQPPLYSIKRGKSLQYLKDEEA 606

Query: 597 KQKILEE 603
           K+    E
Sbjct: 607 KENYFIE 613



 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 4/88 (4%)

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           + +LE   K G+  I + R+KGLGEM A QL ET +D + R+LL+V++ +      D  D
Sbjct: 774 RSLLEAVFKAGEKGITLQRYKGLGEMNAEQLWETTLDPDARSLLQVKVTE----ASDADD 829

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
              +LMG + + R  FIQ+ A  + ++ 
Sbjct: 830 LFTRLMGEEVEPRRNFIQDNALSVANLD 857


>gi|304309656|ref|YP_003809254.1| DNA gyrase (topoisomerase II) B subunit [gamma proteobacterium
           HdN1]
 gi|301795389|emb|CBL43587.1| DNA gyrase (topoisomerase II) B subunit [gamma proteobacterium
           HdN1]
          Length = 807

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 228/573 (39%), Positives = 345/573 (60%), Gaps = 20/573 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
            + +  +  YD+SSI++L GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+
Sbjct: 1   MSQEEDTKGYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGF 60

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
              I V++  +  +TV D+GRGIPV+ HP+    S  E+I+T LHAGGKFD++TY++SGG
Sbjct: 61  CKEITVTIHQDETITVCDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNTYKVSGG 119

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS+EL +T+ R+  ++ Q +  G+P  PL    +     GT++ F+P  
Sbjct: 120 LHGVGVSVVNALSEELVLTIRRKGKVWQQIYRHGVPQEPLAPIGESS-TTGTQVHFKPSS 178

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           + F +   F    L +  +  ++L+  VK     ++           + F + GGL+ ++
Sbjct: 179 ETFSNI-EFSHEILARRLRELSFLNSGVKILLKDER-------TDATDVFCYEGGLEQFV 230

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +    N++ ++       +EK G    +VE A+ W +     +  Y N I   +GGTH +
Sbjct: 231 KFLNLNKTPLNKVF-YFSSEKDGV---SVEVALQWNDGYQENVRCYTNNIPQRDGGTHLA 286

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R A+TR I +Y +      K  IS   DD     V I+SV + +P+F+ QTK KLVS 
Sbjct: 287 GFRSAMTRAINQYLDQEGITKKHKISASGDDAREGLVAIVSVKVGDPKFSSQTKDKLVSS 346

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRL 449
           + +  VE  + +    YL + P EA  + + +I+ +  R   RK R    RK A+    L
Sbjct: 347 EVKPAVETLMFEKLSEYLAEQPNEAKIVCQKIIDAARAREAARKAREMTRRKGALDIAGL 406

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ +
Sbjct: 407 PGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMLS 466

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           + ++  L+ ALGC   R +Y  +  RY  +IIMTDADVDG+HI +LLLTFF+++M +LIE
Sbjct: 467 SAEVGTLITALGCGIGREEYDPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIE 526

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           + ++++  PPL++I +G +  Y  D+E     L
Sbjct: 527 RGYIYIAQPPLYKIKKGKQEQYLKDDEALSHYL 559



 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 56/147 (38%), Gaps = 27/147 (18%)

Query: 550 HIASLLLTFF----YQEM-------YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQ 598
           H  +L   FF    Y+          +LI++            + +G K           
Sbjct: 676 HHYTLGRDFFISNDYRMFTTLGAKVRNLIQEGAF---------VKKGEKV---KTVSSFP 723

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           +++E      +   +I R+KGLGEM   QL ET MD   R +LRV +   +         
Sbjct: 724 EVVEWLMDESRRGHQIQRYKGLGEMNPEQLWETTMDPEMRRMLRVTVEDAI----AADQI 779

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
              LMG   + R  FI+  A  + ++ 
Sbjct: 780 FTTLMGDAVEPRRDFIETNALNVANLD 806


>gi|293394324|ref|ZP_06638624.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Serratia odorifera DSM
           4582]
 gi|291423302|gb|EFE96531.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Serratia odorifera DSM
           4582]
          Length = 606

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 237/624 (37%), Positives = 342/624 (54%), Gaps = 26/624 (4%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MY   TD    +HL  EVIDN++DE +AG+A  I+V L  +  L VVD+GRG+PV+ HP+
Sbjct: 1   MY---TDTSRPNHLGQEVIDNSVDEALAGHAKRIDVILHADQSLEVVDDGRGMPVDIHPE 57

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
                 +E+IL  LHAGGKF N  Y+ SGGLHGVGISVVNALS  + V V R   I+S  
Sbjct: 58  -EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVKRDGNIYSIA 116

Query: 184 FSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
           F  G  +  L       +   GT + F PD + F D   F  +RL  + ++KA L   V+
Sbjct: 117 FENGDKVQDLGVTGSCGKRNTGTSVHFWPD-EQFFDSPRFSVSRLSHLLKAKAVLCPGVE 175

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
             +       E       + + +  GL  YL   +     +    F G           V
Sbjct: 176 IYFIDKVNNTE-------QRWCYQDGLTDYLMEAVNGLITLPEAPFVGSFAGDIE---AV 225

Query: 303 EWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAISIIS 359
           +WA+ W  E  E    SY N I T +GGTH +GLR  L   ++++ E      R + + +
Sbjct: 226 DWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEFRNILPRGVKLSA 285

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           +D+      +LSV +++P+FAGQTK +L S      V   ++D F  +L QN   A +L 
Sbjct: 286 EDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFSLWLNQNVQAAEQLA 345

Query: 420 EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           E  I  ++ RLR    ++V RK       LPGKLADC+      TELF+VEGDSAGGSAK
Sbjct: 346 ELAISSAQRRLR--AAKKVVRKKLTSGPALPGKLADCTAQDLSLTELFLVEGDSAGGSAK 403

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
           QAR+R  QA++PL+GKILN     S+++  +Q++ D+  A+G    S      LRY K+ 
Sbjct: 404 QARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDL-SQLRYGKIC 462

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599
           I+ DAD DG HIA+LL   F +    L++  H+++  PPL+RI  G +  YA DEE K  
Sbjct: 463 ILADADSDGLHIATLLCALFVRHFRSLVKGGHVYVAMPPLYRIDLGKEVYYALDEEEKAG 522

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
           +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N R L+++ +N     +  T   +
Sbjct: 523 VLEQLKRK-KGKPNVQRFKGLGEMNPLQLRETTLDPNTRRLVQLTVND--EDVDQTLAMM 579

Query: 660 NKLMGTK-ADERFKFIQERASFID 682
           + L+  K +++R  ++Q++    +
Sbjct: 580 DMLLAKKRSEDRRNWLQDKGDMAE 603


>gi|237653590|ref|YP_002889904.1| DNA topoisomerase IV subunit B [Thauera sp. MZ1T]
 gi|237624837|gb|ACR01527.1| DNA topoisomerase (ATP-hydrolyzing) [Thauera sp. MZ1T]
          Length = 662

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 253/671 (37%), Positives = 352/671 (52%), Gaps = 36/671 (5%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              Q     YD SS R+L+GLEPVR RPGMY   T   +  H+  EVIDNA DE + G+A
Sbjct: 2   AGTQGTPKQYDESSFRVLKGLEPVRERPGMY---TRTDSPAHIIQEVIDNAADEALGGFA 58

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD----NSTYEI 150
             I V+L  +G +TV D+GRGIPV  HP+      + +  T LHAGGKFD    NS Y  
Sbjct: 59  KKIHVTLHVDGSVTVADDGRGIPVGLHPE-EGVPVVVLAYTRLHAGGKFDKREGNSAYAF 117

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITF 209
           SGGLHGVG+SV NALS  + V V R+  I    FS  G  + P+  +     + GTR+  
Sbjct: 118 SGGLHGVGVSVTNALSTRIEVEVRREGKIHRIDFSDGGETIGPVRVEGDCGRQTGTRVRV 177

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD K F          L ++ +SKA L   V      +    +  G    + + +P GL
Sbjct: 178 WPDGKYFES-PRVPMNELERLLRSKAVLLSGVAVRLDIE----QANGPALTKTWSYPDGL 232

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTH----RGTVEWAIAWCEENPEITSYCNTILTD 325
             YL+    +   ++      K   K            WA+AW E      SY N I T 
Sbjct: 233 AGYLKELAGDVEPVAPIFTAEKYAAKDDPTFAAGEGAAWALAWFESPVPSESYVNLIPTV 292

Query: 326 EGGTHESGLRVALTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
            GGTHESGLR  +   +K + +      R + +  +D+      +LS  + +P+F GQ K
Sbjct: 293 NGGTHESGLRAGVFEAMKSFIDHHTLLPRGVKLQQEDVCGRMSFVLSARLLDPQFQGQVK 352

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI 444
            KL S +A + V + LRDPF+ +L  +      + E  I+++  R +  ++ E  + + +
Sbjct: 353 EKLNSREAVKLVSSQLRDPFEIWLNNHVEAGRAIAELSIKQALARQKSAQKVEKKKTSGV 412

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
             L  PGKL+DC        ELF+VEGDSAGGSAK ARN+  QA+LPLRGK+ N      
Sbjct: 413 AVL--PGKLSDCESEDLADNELFLVEGDSAGGSAKMARNKETQAILPLRGKVQNAWEIDP 470

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
           +++  N +I D+  ALG    +     D   LRY KV+IM+DADVDGAHI +LLLT F++
Sbjct: 471 DRLFANAEIHDIAVALGVDAHTADSPIDLSGLRYGKVVIMSDADVDGAHIQTLLLTLFFR 530

Query: 562 EMYDLIEQKHLFLISPPLFRIT---QGTK----SVYAHDEEHKQKILEEFKKHG--KGKI 612
               LIE+ H+++  PPL+RI    QG K     +YA DE     + E  +K G     I
Sbjct: 531 HFPKLIERGHVYVAQPPLYRIDVPAQGKKRPPRRLYALDEGELAAMRERLEKEGFKPDAI 590

Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERF 671
           EI RFKGLGEM   QL+ET MD   R +L V++     +L+DT      LMG  +A  R 
Sbjct: 591 EIGRFKGLGEMNPDQLRETTMDPATRRVLPVKV--RSGALQDTLKMFTLLMGKGEASGRR 648

Query: 672 KFIQERASFID 682
            +++E+   ++
Sbjct: 649 AWMEEKGDSVE 659


>gi|149375632|ref|ZP_01893401.1| DNA gyrase, B subunit [Marinobacter algicola DG893]
 gi|149360034|gb|EDM48489.1| DNA gyrase, B subunit [Marinobacter algicola DG893]
          Length = 804

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 233/575 (40%), Positives = 344/575 (59%), Gaps = 19/575 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  NY++SSI++L+GL+ VR RPGMYIG TD+   LHH+  E++DN++DE +AG+ + I 
Sbjct: 2   SESNYNSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFELVDNSIDEALAGHCSEIG 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V +  +  +TV DNGRGIPV+ H K    S  E+I+T LHAGGKFD+++Y++SGGLHGVG
Sbjct: 62  VIIHPDESVTVRDNGRGIPVDLH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS  L +T+ R   ++ Q ++ G+P +PL+      +  GT++ F P P+ F  
Sbjct: 121 VSVVNALSSSLTLTIRRDGKVYEQTYNNGVPKAPLDVVGDT-DASGTKVHFIPSPETFTS 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  A+L+  V+     ++   E       E F + GGL+ +++    
Sbjct: 180 I-EFHWDILAKRLRELAFLNSGVRIRLQDERSGKE-------EVFEYEGGLRAFVEHLNS 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ I+      K  + G     VE A+ W +     I ++ N I   +GGTH +G R A
Sbjct: 232 NKTPINRVFHFIKEREDGI---AVEVAMQWNDAFQENIYTFTNNIPQRDGGTHLAGFRAA 288

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  +S   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 289 LTRSLNNYIEHEGLGKKAKVSTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 348

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  L   F  +L + P EA  ++  +IE +  R   RK      RK A+    LPGKLA
Sbjct: 349 VEQELYQSFADFLQEQPSEAKLIVNKMIEAARAREAARKARDMTRRKGALDIAGLPGKLA 408

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +ELFIVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 409 DCQEKDPALSELFIVEGDSAGGSAKQGRDRKTQAILPLKGKILNVEKARFDKMLSSAEVG 468

Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            L+ ALGC   R ++  E LRY  +IIMTDADVDG+HI +LLLTF +++M ++IE+ H+F
Sbjct: 469 TLITALGCGIGREEFNPEKLRYHSLIIMTDADVDGSHIRTLLLTFLFRQMREIIERGHVF 528

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +  PPL+++ +G +  Y  DE+ K+  L +    G
Sbjct: 529 IAMPPLYKVKRGKQEQYLKDEKAKEAYLTQTALEG 563



 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            +  L+   K  +  + I R+KGLGEM   QL ET MD   R +++V I   +       
Sbjct: 719 YEGALDWLMKEAQRGLNIQRYKGLGEMNPEQLWETTMDPETRRMMKVTIEDAI----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FIQ  A  + ++ 
Sbjct: 775 QIFTTLMGDDVEPRRLFIQSNALEVTNLD 803


>gi|220925683|ref|YP_002500985.1| DNA gyrase subunit B [Methylobacterium nodulans ORS 2060]
 gi|219950290|gb|ACL60682.1| DNA gyrase, B subunit [Methylobacterium nodulans ORS 2060]
          Length = 808

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 239/582 (41%), Positives = 349/582 (59%), Gaps = 16/582 (2%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIA 91
              A    +D Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +A
Sbjct: 2   AEPARDLTTDTYSADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+A L+ V+L+ +G  TV DNGRGIP + H +    S  E+I+T LHAGGKFD ++Y++S
Sbjct: 62  GHATLVTVTLNPDGSCTVSDNGRGIPTDIHAE-EGVSAAEVIMTQLHAGGKFDQNSYKVS 120

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS  L + + R     + +F  G  ++PL        KRGT +TF P
Sbjct: 121 GGLHGVGVSVVNALSTWLRLRIWRGGHEHAMEFRHGDAVAPLAVVGPAGEKRGTEVTFLP 180

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
            P+ F     FD A L K  +  A+L+  V+   +  +    K      EE  + GG++ 
Sbjct: 181 SPETFS-MVEFDYATLEKRLRELAFLNSGVRIVLTDARHAEHKR-----EELVYEGGVEA 234

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++     ++ + ++    + E+ G     VE A+ W +     +  + N I   +GGTH
Sbjct: 235 FVRYLDRTKTPLVAKPVVVRAERDGI---GVEVALWWNDSYHETVLPFTNNIPQRDGGTH 291

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR I  YAE +    K  +++  DD       I+SV + +P+F+ QTK KLV
Sbjct: 292 MAGFRAALTRQITGYAESSGIAKKEKVTLSGDDCREGLTAIISVKVPDPKFSSQTKDKLV 351

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447
           S + +  VEN L +   ++L ++P EA  ++  V E +  R   RK RE   RK A+   
Sbjct: 352 SSEVRPVVENVLNEGLSNWLEEHPSEAKTIVGKVAEAAAAREAARKARELTRRKGALDIA 411

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +      E+ +VEGDSAGGSAKQ R+R+ QAVLPLRGKILNV  A  +K+
Sbjct: 412 SLPGKLADCQERDPSKCEILLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERARFDKM 471

Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
            ++Q+I  L+ ALG    R ++  + LRY ++IIMTDADVDG+HI +LLLTFF+++M +L
Sbjct: 472 LSSQEIGTLITALGTGIGREEFNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFFRQMPEL 531

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           IE+ HL++  PPL++ ++G  ++Y  DE   +  L +    G
Sbjct: 532 IERGHLYIAQPPLYKASKGRSAIYLKDERALEDYLIDGGIEG 573



 Score =  123 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            + E     G+  +++ R+KGLGEM A QL ET +D + R+LL+V++        D  D 
Sbjct: 725 ALFETMMALGRKGLQLQRYKGLGEMTAQQLWETTLDRDVRSLLQVKV----KDTTDADDL 780

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R +FIQE A  + ++ 
Sbjct: 781 FVKLMGDVVEPRREFIQENALNVANLD 807


>gi|254447538|ref|ZP_05061004.1| DNA gyrase, B subunit [gamma proteobacterium HTCC5015]
 gi|198262881|gb|EDY87160.1| DNA gyrase, B subunit [gamma proteobacterium HTCC5015]
          Length = 802

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 222/567 (39%), Positives = 352/567 (62%), Gaps = 18/567 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           SDNYD+S+I++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I V
Sbjct: 2   SDNYDSSNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSEIRV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            +  +  ++V DNGRGIP + HP+   +S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  VIHNDESVSVSDNGRGIPTDIHPE-EGRSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L + + R      Q ++  +P +PLE      ++ GT+ITFR   +IF + 
Sbjct: 121 SVVNALSNKLTLEILRNGKRHIQHYTDSVPDAPLEVAGDT-DRSGTKITFRASEEIFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             +    L K  +  ++L+  ++     ++         +++ F + GG+  +++   +N
Sbjct: 180 T-YHYDILAKRLRELSFLNSGIRIVLRDER------AEGKEDVFEYEGGISAFVEHLSKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ +  ++    T K+      VE A+ W +     I  Y N I   +GGTH +G R AL
Sbjct: 233 KTPLHEQVIHFDTSKEDI---GVEVALQWSDSYQENIFCYTNNIPQRDGGTHLAGFRGAL 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +     +K  +S+  DD     V ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNNYIDREGVASKAKVSVSGDDAREGLVAVVSVKVPDPKFSSQTKDKLVSSEVKSVV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+A+ +    +L+++P EA  +   +++ +  R   RK R    RK  +    LPGKLAD
Sbjct: 350 ESAMTEKLSEFLLEHPNEAKAIAHKIVDAARAREAARKAREMTRRKDVLDVAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +ELFIVEGDSAGGSAKQ R+R  QAVLPL+GKILNV  A  +K+ ++ ++  
Sbjct: 410 CQEKDPTQSELFIVEGDSAGGSAKQGRDRRTQAVLPLKGKILNVEKARFDKMLSSAEVGT 469

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   + ++  + LRY ++IIMTDADVDG+HI +LLLTFFY++M +L+E+ H+++
Sbjct: 470 LITALGCGIGKEEFDPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELVERGHIYI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKIL 601
             PPL+++ +G +  Y  D++     L
Sbjct: 530 AQPPLYKVKKGKQERYLKDDKSLTDYL 556



 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G K             L       +    I R+KGLGEM   QL ET +D   R LL
Sbjct: 705 IKRGDKIQEVQT---FGAALMWLLADARKGQMIQRYKGLGEMNPDQLHETTLDPETRRLL 761

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +       +    LMG   + R  FI+  A  + ++ 
Sbjct: 762 QVRIEDAV----AADEVFTTLMGDHVEPRRDFIESNALSVANLD 801


>gi|292490174|ref|YP_003525613.1| DNA gyrase subunit beta [Nitrosococcus halophilus Nc4]
 gi|291578769|gb|ADE13226.1| DNA gyrase, B subunit [Nitrosococcus halophilus Nc4]
          Length = 805

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 228/581 (39%), Positives = 349/581 (60%), Gaps = 19/581 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
            AS  YD+S I++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ N +
Sbjct: 2   KASTAYDSSHIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGFCNEV 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V +  N  +T+ DNGRGIP + H +   +S  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  SVIVHSNDTVTISDNGRGIPTDIHHE-EGRSAAEVIMTVLHAGGKFDHNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS  L + + R   ++ Q +  G+P +PL      +   GT I F P PKIF 
Sbjct: 121 GVSVVNALSSTLFLEIHRDGQVYQQHYRDGVPQAPLTTVGSTK-HSGTTIRFSPSPKIFS 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F+     K  +  A+L+  V+     ++       +  KEEF + GG++ +++   
Sbjct: 180 NIV-FNFDIFAKRLRELAFLNAGVRILLEDER-------VGRKEEFLYEGGIQAFVEHLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           +N++ +   +F  + E+       VE A+ W +        + N I   +GGTH +G R 
Sbjct: 232 KNKTPLHDNVFYFQGERDDV---VVELAMQWNDSYQEHFFCFTNNIPQRDGGTHLAGFRS 288

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR + +Y E      K  +S   DD       +LS+ +R+P+F+ QTK KLVS + + 
Sbjct: 289 ALTRTLNQYIEREALAKKTKVSTTGDDAREGLTAVLSIKVRDPKFSSQTKEKLVSSEVKP 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            V+  + + F  +L+++P +A  +   +I+ +  R   RK RE   RK A+    LPGKL
Sbjct: 349 VVDALVSEYFQSFLLEHPADAKAIGSKMIDAARAREAARKARELTRRKGALDMAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +ELF+VEGDSAGGSAKQ R+R NQA+LPL+GKILNV  A  +K+ ++ ++
Sbjct: 409 ADCQERDPTLSELFVVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSAEV 468

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC   R +Y  + LRY ++IIMTDADVDG+HI +LLLTFFY++M +L+E+ H+
Sbjct: 469 ATLITALGCGVGREEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELVERGHI 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613
           ++  PPL+++ +G +  Y  D+   ++ L            
Sbjct: 529 YIAQPPLYKVKRGKQERYIRDDAEMERYLINLAIDNAKIYS 569



 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 45/115 (39%), Gaps = 14/115 (12%)

Query: 578 PLFR-------ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           PL +       + +  K       +     L E  + G+    + R+KGLGEM   QL E
Sbjct: 697 PLVKLITTESYVQRNDKQQPVSSIQGAVNWLMEEARRGQA---VQRYKGLGEMNPDQLWE 753

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T M+   R L +V I   +       +    LMG   + R  FI+  A  +  + 
Sbjct: 754 TTMNPATRRLSQVRIEDAI----AADEIFTTLMGDHVEPRRDFIEANALNVAHLD 804


>gi|330961508|gb|EGH61768.1| DNA gyrase subunit B [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 805

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 225/569 (39%), Positives = 342/569 (60%), Gaps = 19/569 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S +  YD++SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I
Sbjct: 2   SENQTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            + +  +  +TV DNGRGIPV+ H K    S  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  SIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+I F+P    F 
Sbjct: 121 GVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDTTGTQIHFKPSADTFK 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++   
Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++           G     VE A+ W +     +  + N I   +GGTH  G R 
Sbjct: 232 TNKTPVNEVFHFNVQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 289 ALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPGKL
Sbjct: 349 AVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 468

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++
Sbjct: 469 GTLITALGCGIGRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++  PPL+++ +G +  Y  D+E  ++ +
Sbjct: 529 YIAQPPLYKVKKGKQEQYIKDDEAMEEYM 557



 Score =  136 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             ++ L         +  I R+KGLGEM   QL ET MD + R +L+V I   +      
Sbjct: 719 EFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIG----A 774

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
               N LMG   + R  FI+  A  + ++ 
Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804


>gi|319407911|emb|CBI81565.1| DNA gyrase subunit B [Bartonella schoenbuchensis R1]
          Length = 809

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 235/572 (41%), Positives = 343/572 (59%), Gaps = 16/572 (2%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYA 94
              S++  Y A+SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+A
Sbjct: 5   TTSSSNSEYGAASIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHA 64

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
            L+ V+L  +G  +V DNGRGIP + HP     S  E+I+T LHAGGKFD ++Y++SGGL
Sbjct: 65  TLVNVTLHADGSCSVRDNGRGIPTDIHP-TEGVSAAEVIMTQLHAGGKFDQNSYKVSGGL 123

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS  L + + R   I    F+RG+  SPL+       + GT I+F P  +
Sbjct: 124 HGVGVSVVNALSVWLRLQIKRNGKIHEMSFTRGVADSPLKIVGDCDTESGTEISFLPSSE 183

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     FD   L +  +  A+L+  V    +  +         +  + ++ GGL  +++
Sbjct: 184 IFTKT-KFDFETLERRLRELAFLNSGVHILLTDQRHADV-----QSVKLHYDGGLIEFVK 237

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +++ ++         EK G    +VE A+ W +    ++  + N I   +GGTH +G
Sbjct: 238 YIDQSKKVLIDNPIYITNEKDG---MSVEVALWWNDSYHEKVLCFTNNIPQRDGGTHLAG 294

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR I  YAE +    K  +++  DD       ILSV + +P+F+ QTK KLVS +
Sbjct: 295 FRSALTRQINGYAESSGITKKEKVNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSE 354

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VEN + +    +L ++P EA  L+  V+E +  R   RK RE   RK A+    LP
Sbjct: 355 VRPIVENLVNEGLSAWLEEHPNEAKILISKVVEAAAAREAARKARELTRRKGALDITSLP 414

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +E+FIVEGDSAGGSAK  R+R NQA+LPLRGKILNV  A  +++ ++
Sbjct: 415 GKLADCQERDPTKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERARFDRMLSS 474

Query: 511 QQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           + I  L+ ALG          + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE+
Sbjct: 475 EMIGTLITALGTSIGKDEFSPDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIER 534

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
            HL++  PPL+++++G    Y  +E   ++ L
Sbjct: 535 GHLYIAQPPLYKVSRGKSFQYIKNETAFEEFL 566



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +LE    +GK  I + R+KGLGEM A QL ET +D + R+LL+V+IN       D    
Sbjct: 726 SLLESIFVNGKKGITLQRYKGLGEMNAEQLWETTLDPDARSLLQVKINDAT----DADSL 781

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            ++LMG + + R  FIQ  A  + ++ 
Sbjct: 782 FSRLMGDEVEPRRVFIQNNALSVANLD 808


>gi|264677300|ref|YP_003277206.1| DNA topoisomerase, type IIA, subunit B, region [Comamonas
           testosteroni CNB-2]
 gi|262207812|gb|ACY31910.1| DNA topoisomerase, type IIA, subunit B, region [Comamonas
           testosteroni CNB-2]
          Length = 656

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 238/666 (35%), Positives = 344/666 (51%), Gaps = 38/666 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
             S+ Y   SIR+L+GLEPV+ RPGMY   T      H+  EVIDNA DE +AGY   I+
Sbjct: 4   KPSNEYSEGSIRVLKGLEPVKQRPGMY---TRTDNPLHILQEVIDNAADEALAGYGKKIK 60

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST---YEISGGLH 155
             +  +G  +V D+GRGIP   HP+      +E++ T LHAGGKFD      Y  SGGLH
Sbjct: 61  FIMHADGSYSVEDDGRGIPFGLHPE-EKAPVVELVFTRLHAGGKFDKGNGGAYSFSGGLH 119

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDP 213
           GVG+SV NAL+  L V V R   + +  FS G  + PL+ +       K+GT +   PD 
Sbjct: 120 GVGVSVTNALATRLEVQVHRDGQVATLVFSGGDVIEPLKVRPLQAGERKQGTTVRAWPDA 179

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F   +      L+ + +SKA L   V      +K           + + F GGL+ YL
Sbjct: 180 KYFES-SALPMGELVHLLRSKAVLMPGVAVSLINEKSRD-------TQSWQFKGGLRDYL 231

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW----CEENPEITSYCNTILTDEGGT 329
              L    +I      G  +K        E A        +  P   SY N I T  GGT
Sbjct: 232 AQSLHGEPVIPLFEGEGFADKNNDSFAEGEGAAWCVAFTEDGAPLRESYVNLIPTTAGGT 291

Query: 330 HESGLRVALTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           H+SGLR  L + +K + ++     + + ++ DD+   A  +L+  + +P+F GQ K +L 
Sbjct: 292 HDSGLRDGLFQAVKAFIDMHSLLPKGVKLMPDDVFARASYVLNAKVLDPQFQGQIKERLN 351

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR 448
           S DA R V   +R   + +L ++     KL E  I+ ++ R +  ++ E  + + +  L 
Sbjct: 352 SRDAVRLVSGFVRPALELWLNEHVDWGKKLAEIAIKAAQTRQKAGQKVEKRKGSGVAVL- 410

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
            PGKL DC        E+F+VEGDSAGGSAK  R++  QA+LPLRGK+LN      +++ 
Sbjct: 411 -PGKLTDCESKDIAVNEVFLVEGDSAGGSAKMGRDKETQAILPLRGKVLNTWEVDRDRLF 469

Query: 509 NNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
            N +I D+  A+G        E D   LRY K+ I++DADVDG+HI  LLLT F++    
Sbjct: 470 ANNEIHDISVAIGVDPHGPNDEPDLSGLRYGKICILSDADVDGSHIQVLLLTLFFKHFPK 529

Query: 566 LIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKIEISRF 617
           LIE  H+ +  PPLFR+    +G K    VYA D      I+E+  K G  + K ++SRF
Sbjct: 530 LIEAGHIHVALPPLFRVDVPARGKKPAIKVYALDAGELDAIIEKCAKDGVPREKCQVSRF 589

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQE 676
           KGLGEM A QL ET ++ + R LL V+          ++  + KLMG  +A  R + ++ 
Sbjct: 590 KGLGEMNAEQLWETTLNPDTRRLLPVQFMN--LDFAQSEAVVTKLMGKGEAAARRELMEL 647

Query: 677 RASFID 682
               ++
Sbjct: 648 HGDAVE 653


>gi|113868628|ref|YP_727117.1| DNA topoisomerase IV subunit B [Ralstonia eutropha H16]
 gi|113527404|emb|CAJ93749.1| Topoisomerase IV subunit B [Ralstonia eutropha H16]
          Length = 663

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 245/668 (36%), Positives = 346/668 (51%), Gaps = 34/668 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           S +  Y  SSIR+L+GLEPV+ RPGMY   T      H+  EVIDNA DE + G+ + I 
Sbjct: 3   SKTSQYSESSIRVLKGLEPVKQRPGMY---TRTDNPLHIVQEVIDNASDEALGGHGSEIL 59

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA---GGKFDNSTYEISGGLH 155
           V+L  +G L+V D+GRGIPV  HP+      +EI+ T LHA     K     Y  SGGLH
Sbjct: 60  VTLHRDGSLSVEDDGRGIPVGIHPE-EGVPVVEIVFTRLHAGGKFDKGKGGAYAFSGGLH 118

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--LEKKEKVRNKRGTRITFRPDP 213
           GVG+SV NALS +L VTV R +   +  FS G    P    K E+   K GTR+   PD 
Sbjct: 119 GVGVSVTNALSTQLDVTVWRDSMCSTLTFSGGDVTVPLASRKIERGEKKSGTRVQVWPDA 178

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF------PG 267
             + D A    A L ++ +SKA L   VK     +K    +    ++    +       G
Sbjct: 179 -RYFDSAAIPLAELQRLLRSKAVLLPGVKVTLVTEKTGERQTWQYDQGLKGYLVEALAQG 237

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEG 327
                +    E       +   G          +   A    +  P   SY N I T  G
Sbjct: 238 SGAELVIPMFEGEHFADPDANPGDEGFADGEGASWVVAWT-EDGAPVRESYVNLIPTPAG 296

Query: 328 GTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           GTHESGLR  L + +K + E+     + + ++S+D+   A  +LS  + +P+F GQ K +
Sbjct: 297 GTHESGLREGLFQAVKSFIEMHALQPKGVKLMSEDVFARASFVLSAKVLDPQFQGQIKER 356

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L S DA R V    R   + +L  +     KL E VI +++ R R  ++ E  + + +  
Sbjct: 357 LNSRDAVRLVSTFSRPALELWLNHHVEYGKKLAELVIRQAQARTRAAQKVEKKKGSGVAV 416

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
           L  PGKL DC        ELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN      ++
Sbjct: 417 L--PGKLTDCESTDVTRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTWETERDR 474

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +  N ++ D+  A+G        E D   LRY K+ I++DADVDGAHI  LLLT F++  
Sbjct: 475 LFANNEVHDIAVAIGVDPHGANDEPDLSNLRYGKICILSDADVDGAHIQVLLLTLFFRHF 534

Query: 564 YDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKIEIS 615
             LIE  ++F+  PPLFR+    +G K    +YA DE     I ++  K G  +   +IS
Sbjct: 535 PKLIETGNVFVARPPLFRVDAPARGKKPAQKLYALDEGELLAIQDKLLKDGVKENSWQIS 594

Query: 616 RFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFI 674
           RFKGLGEM A QL ET M+ + R LL V +      L  T + +N LMG  +A +R  ++
Sbjct: 595 RFKGLGEMSAEQLWETTMNPDTRRLLPVSL--GEYDLPQTVEMMNMLMGKGEAAQRRSWL 652

Query: 675 QERASFID 682
           +E+ + ++
Sbjct: 653 EEKGNEVE 660


>gi|146329798|ref|YP_001209586.1| DNA topoisomerase IV subunit B [Dichelobacter nodosus VCS1703A]
 gi|146233268|gb|ABQ14246.1| DNA topoisomerase IV, B subunit [Dichelobacter nodosus VCS1703A]
          Length = 635

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 239/648 (36%), Positives = 348/648 (53%), Gaps = 26/648 (4%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y AS I +L+GLEPV+ RPGM+   TD     HL  EVIDN++DE +AG+A+ I+V+L  
Sbjct: 4   YQASDIELLKGLEPVKRRPGMF---TDTSRPDHLAQEVIDNSVDEALAGFAHAIDVTLYE 60

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G L V D+GRG+PV+ HP     S +E+ILT LHAGGKF    Y ISGGLHGVG++VVN
Sbjct: 61  DGSLAVCDDGRGMPVDEHP-GEKISGVELILTRLHAGGKFSQKNYAISGGLHGVGVAVVN 119

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK-VRNKRGTRITFRPDPKIFGDKAGF 222
           ALS  L V + R    +      G  + PL K EK  +N+ GTR+ F  +P  F   A F
Sbjct: 120 ALSSRLEVQIDRDGFRYQIVCEHGEVIEPLRKIEKIAKNQHGTRVRFWANPDYFE-HAQF 178

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               LL   +SKA L   +   +             +  ++ +  GL  YL   L   + 
Sbjct: 179 SVPWLLHALKSKAVLCAGLTVHF-------HHLATEKSYQWCYENGLVAYLTDALHQETT 231

Query: 283 ISSEIFTGKT-EKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
           I  + F+    ++ G       W       N    SY N I T +GGTH +GLR  L   
Sbjct: 232 IPDQPFSLHYQDENGELDIAFSWLETVKNTNSINESYANLIPTLDGGTHVNGLRAGLVDA 291

Query: 342 IKKYAELTQNKRAISIIS-DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
           ++++ +  Q       +  +D+      +LS+ I EP+FA QTK +L S      +   +
Sbjct: 292 LREFCDFRQLLPRGLRLLPEDIWQGCQYVLSIKIPEPQFASQTKERLTSRTCAAWINTII 351

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
            D F  +L Q+     KL +  IER+  RLR +K+    R    +   LP KLADC    
Sbjct: 352 ADRFGLFLNQHLEWGEKLAQLAIERAYARLREQKKTPRKRH---QGAPLPSKLADCLSQE 408

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              TELF+VEGDSAGGSAKQAR+R+ QA+LPLRGKILN     ++ I  NQ++ D+  A+
Sbjct: 409 LQETELFLVEGDSAGGSAKQARDRNTQAILPLRGKILNTWEIAADDIMMNQEVRDIAVAI 468

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           G    S      LRY K+ I+ DAD DG HIA+L+     +    L+   HL++  PPL+
Sbjct: 469 GVAPDSDDL-SGLRYGKICILADADSDGLHIATLINALMVKHFTALVAAGHLYVAMPPLY 527

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           R+  G K  YA D++ + + ++  ++ G  GKI ++RFKGLGEM   QL+ET M  + R 
Sbjct: 528 RLDAGKKVAYALDDDERNEWIKRQRRTGYTGKINVTRFKGLGEMNPQQLRETTMQPHSRR 587

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDVGT 686
           L+++         ++T   ++KL+  K + +R  +++   +   ++  
Sbjct: 588 LVQLTF-----DPEETYPLMDKLLAKKRSADRRAWLEMHGNQARNLDA 630


>gi|209363643|ref|YP_001423444.2| DNA gyrase subunit B [Coxiella burnetii Dugway 5J108-111]
 gi|207081576|gb|ABS76986.2| DNA gyrase subunit B [Coxiella burnetii Dugway 5J108-111]
          Length = 810

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 229/562 (40%), Positives = 346/562 (61%), Gaps = 19/562 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           + SA   YD+S+I++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ +
Sbjct: 4   SVSAPQKYDSSTIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGFCS 63

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V DNGRGIP + HP+   +S  E+I+T LHAGGKFD + Y++SGGLH
Sbjct: 64  HIWVTIHADCSVSVRDNGRGIPTDIHPE-EGRSAAEVIMTVLHAGGKFDKNAYKVSGGLH 122

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVGISVVNALS+EL++T+ +   +++Q +  G+P +PL    K  +K GT I F+P   I
Sbjct: 123 GVGISVVNALSEELYMTIRQNGNVYTQTYKMGVPQAPLAVTGK-SDKTGTEIRFKPSNAI 181

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   F    L K  +  A+L+  V+   + ++           + F + GG+K +++ 
Sbjct: 182 FSNT-EFHYDILAKRLRELAFLNLGVRIELTDERS-------GRGDIFEYEGGIKAFVEH 233

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             + ++ I S++F   TEK       VE A+ W +     I  + N I  ++GGTH +G 
Sbjct: 234 LNKKKTPIHSDVFHFSTEKNDI---VVEVAMQWNDGFQETIFCFTNNIPQNDGGTHLAGF 290

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y E      K  ++I  DD       +LSV + +P+F+ QTK KLVS + 
Sbjct: 291 RAALTRTLNNYIEGEALAKKSKVTISGDDTREGLTVVLSVKVPDPKFSSQTKDKLVSSEV 350

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPG 451
           +  VE+ +      YL++NP +A  +   VI+ +  R   RK      RK  +    LPG
Sbjct: 351 KPVVESTVAKQLHDYLLENPKQARIIAMKVIDAARAREAARKARDMTRRKNVLDLGGLPG 410

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +      ELF+VEGDSAGGSAKQAR+R  QA+LPL+GKILNV  A  +K+ ++ 
Sbjct: 411 KLADCQEKDPALCELFLVEGDSAGGSAKQARDRRYQAILPLKGKILNVEKARFDKMLSSA 470

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALGC   + +Y  + LRY ++I+MTDADVDG+HI +LLLTFFY++M +LIE+ 
Sbjct: 471 EVGTLITALGCGIGKEEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERG 530

Query: 571 HLFLISPPLFRITQGTKSVYAH 592
           H+++  PPL+++ +  +  Y  
Sbjct: 531 HIYIAQPPLYKVKKSKQEQYVK 552



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 8/106 (7%)

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           + +    +        H  + LE F + GK  + I R+KGLGEM   QL ET MD   R 
Sbjct: 712 YIVRNDKRR----TVTHFGEALEWFIEEGKKGLNIQRYKGLGEMNPDQLWETTMDRESRR 767

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           LL V I   +       +    LMG + + R  FI++ A  ++++ 
Sbjct: 768 LLSVSIEDAVM----ADEIFTTLMGDQVEPRRLFIEQNALAVENLD 809


>gi|330970328|gb|EGH70394.1| DNA gyrase subunit B [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 805

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 226/569 (39%), Positives = 343/569 (60%), Gaps = 19/569 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S +  YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I
Sbjct: 2   SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDETLAGHCDDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            + +  +  +TV DNGRGIPV+ H K    S  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  SIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+I F+P  + F 
Sbjct: 121 GVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDSTGTQIHFKPSAETFK 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++   
Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++           G     VE A+ W +     +  + N I   +GGTH  G R 
Sbjct: 232 TNKTPVNEVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 289 ALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPGKL
Sbjct: 349 AVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 468

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++
Sbjct: 469 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++  PPL+++ +G +  Y  D+E  ++ +
Sbjct: 529 YIAQPPLYKVKKGKQEQYIKDDEAMEEYM 557



 Score =  136 bits (343), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 4/91 (4%)

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
              ++ L         +  I R+KGLGEM   QL ET MD + R +L+V I   +     
Sbjct: 718 NEFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIG---- 773

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
                N LMG   + R  FI+  A  + ++ 
Sbjct: 774 ADQIFNTLMGDAVEPRRDFIESNALAVSNLD 804


>gi|258542323|ref|YP_003187756.1| DNA gyrase subunit B Hsp90-like ATPase [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256633401|dbj|BAH99376.1| DNA gyrase subunit B Hsp90-like ATPase [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256636460|dbj|BAI02429.1| DNA gyrase subunit B Hsp90-like ATPase [Acetobacter pasteurianus
           IFO 3283-03]
 gi|256639513|dbj|BAI05475.1| DNA gyrase subunit B Hsp90-like ATPase [Acetobacter pasteurianus
           IFO 3283-07]
 gi|256642569|dbj|BAI08524.1| DNA gyrase subunit B Hsp90-like ATPase [Acetobacter pasteurianus
           IFO 3283-22]
 gi|256645624|dbj|BAI11572.1| DNA gyrase subunit B Hsp90-like ATPase [Acetobacter pasteurianus
           IFO 3283-26]
 gi|256648677|dbj|BAI14618.1| DNA gyrase subunit B Hsp90-like ATPase [Acetobacter pasteurianus
           IFO 3283-32]
 gi|256651730|dbj|BAI17664.1| DNA gyrase subunit B Hsp90-like ATPase [Acetobacter pasteurianus
           IFO 3283-01-42C]
 gi|256654721|dbj|BAI20648.1| DNA gyrase subunit B Hsp90-like ATPase [Acetobacter pasteurianus
           IFO 3283-12]
          Length = 812

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 224/581 (38%), Positives = 335/581 (57%), Gaps = 17/581 (2%)

Query: 30  PDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDE 88
            D       + S+ YDA+SI +L+GL+ VR RPGMYIG TD+   LHH+  E+IDNA+DE
Sbjct: 2   TDLSQPTPSAVSEEYDAASISVLKGLDAVRKRPGMYIGDTDDGSGLHHMAFEIIDNAVDE 61

Query: 89  VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148
             AG+A+   V+ + +G ++V DNGRGIP + H +    S  E++LT LHAGGKF+ ++Y
Sbjct: 62  AQAGFASRCIVTFNADGSVSVRDNGRGIPTDMHAE-EGISAAEVVLTRLHAGGKFNQNSY 120

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG +VVNALS+ + V + R       +F  G   +PLE         GT +T
Sbjct: 121 KVSGGLHGVGAAVVNALSEWMEVRIWRNGQEHFIRFQHGERDAPLEVVGPSSEPSGTEVT 180

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F+P  + F     FD   L +  +  A+L+  ++      +          +E+F++ GG
Sbjct: 181 FKPSSETFPKT-DFDFTILERRLRELAFLNSGLEIVLRDAR-----VTPVREEKFFYEGG 234

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           L+ ++     +R+ + +   TG  E    +   VE+A+ W +     +  + N I   +G
Sbjct: 235 LEAFVNWLDRSRTSLFAPPITGSLE-NPDNGIKVEFALTWNDSFHETMLCFTNNIPQRDG 293

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           G H +G R ALTR + KYAE    K A S+  +D+      +LSV + +P+F+ QTK KL
Sbjct: 294 GAHLAGFRQALTRVVGKYAESIAKKDAHSLQGEDMREGLTAVLSVKVPDPKFSSQTKDKL 353

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRK 446
           VS + Q  V  A  D   H+   +P EA  ++  V++ +  R   RK RE+ R+   +  
Sbjct: 354 VSSEVQPVVHAAAADIISHWFETHPKEAKIVISKVLDAASAREAARKARELTRRKGVLDV 413

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC        ELFIVEGDSAGG+AKQ R+R  QA+LPL+GKILNV  A  ++
Sbjct: 414 SSLPGKLADCQARDPAKAELFIVEGDSAGGTAKQGRDRRFQAILPLKGKILNVERARFDR 473

Query: 507 IRNNQQIMDLVQALGCRTRSQYREE------DLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           +  + +I  L+ ALG        E+       LRY +++IMTDADVDG+HI +LLLTFF+
Sbjct: 474 MLGSAEIGTLITALGTGIGRGEPEQGGFSIEKLRYHRIVIMTDADVDGSHIRTLLLTFFF 533

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++M +LIE+ +L++  PPL+R  +G +  Y  D+   ++ L
Sbjct: 534 RQMPELIERGYLYIAQPPLYRAKRGNEETYLKDDAALEQYL 574



 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
                 G+  + I+RFKGLGEM  +QL ET +D   RTLL+V +      +++  D    
Sbjct: 732 ARLLAQGRRGLTINRFKGLGEMNDAQLWETTLDPAMRTLLQVRVGD----VEEAGDVFTT 787

Query: 662 LMGTKADERFKFIQERASFIDDVG 685
           LMG   + R  FI   A  + ++ 
Sbjct: 788 LMGDIVEPRRDFIVGNALKVANLD 811


>gi|319406439|emb|CBI80079.1| DNA gyrase subunit B [Bartonella sp. 1-1C]
          Length = 809

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 232/572 (40%), Positives = 339/572 (59%), Gaps = 16/572 (2%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYA 94
                 D+Y ASSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGYA
Sbjct: 5   TTSPVCDDYGASSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYA 64

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
            L+ V+L  +G  +V DNGRGIP + HP     S  E+I+T LHAGGKFD ++Y++SGGL
Sbjct: 65  TLVNVTLHADGSCSVRDNGRGIPTDIHP-TEGISAAEVIMTQLHAGGKFDQNSYKVSGGL 123

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS  L + + R   I    F+ G+   PL+  +   ++ GT ITF P  +
Sbjct: 124 HGVGVSVVNALSVWLRLRIKRNGKIHEMSFTHGVADFPLKIVDDCDSESGTEITFLPSSE 183

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
            F     FD   L +  +  A+L+  +    +  +    +         ++ GGL  +++
Sbjct: 184 TFT-MVEFDFETLERRLRELAFLNSGIHIILTDQRHADVQSVE-----LHYEGGLIEFVK 237

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +++  +         EK G    +V+ A+ W +    ++  + N I   +GGTH +G
Sbjct: 238 HIDQSKKALIDNPIYITNEKDG---MSVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLAG 294

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR I  YAE +    K  +++  DD       ILSV + +P+F+ QTK KLVS +
Sbjct: 295 FRSALTRQINGYAESSGIAKKEKVNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSE 354

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VEN + +    +L ++P EA  L+  V+E +  R   RK RE   RK A+    LP
Sbjct: 355 VRPIVENLVNEGLSAWLEEHPNEAKILISKVVEAAAAREAARKARELTRRKGALDITSLP 414

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +E+FIVEGDSAGGSAK  R+R NQA+LPLRGKILNV  A  +++ ++
Sbjct: 415 GKLADCQERDPTKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERARFDRMLSS 474

Query: 511 QQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           + I  L+ ALG          + +RY K+IIMTDADVDGAHI +LLLTFF+++M +LIE+
Sbjct: 475 EMIGTLITALGTSIGKDEFSPDKVRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIER 534

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
            HL++  PPL+++++G    Y  +E   ++ L
Sbjct: 535 GHLYIAQPPLYKVSRGKSFQYIKNEAAFEEFL 566



 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +LE   K+GK  + + R+KGLGEM A QL ET ++ + RTLL+V+IN       D    
Sbjct: 726 SLLESIFKNGKKGLTLQRYKGLGEMNADQLWETTLNPDARTLLQVKINDAT----DADSL 781

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            ++LMG + + R  FIQ+ A  + ++ 
Sbjct: 782 FSRLMGDEVEPRRSFIQDNALSVANLD 808


>gi|302185843|ref|ZP_07262516.1| DNA gyrase subunit B [Pseudomonas syringae pv. syringae 642]
          Length = 805

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 225/569 (39%), Positives = 342/569 (60%), Gaps = 19/569 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S +  YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I
Sbjct: 2   SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            + +  +  +TV DNGRGIPV+ H K    S  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  SIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+I F+P  + F 
Sbjct: 121 GVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDSTGTQIHFKPSAETFK 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++   
Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++           G     VE A+ W +     +  + N I   +GGTH  G R 
Sbjct: 232 TNKTPVNEVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 289 ALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
             E  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPGKL
Sbjct: 349 AGEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 468

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++
Sbjct: 469 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++  PPL+++ +G +  Y  D+E  ++ +
Sbjct: 529 YIAQPPLYKVKKGKQEQYIKDDEAMEEYM 557



 Score =  136 bits (343), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 4/91 (4%)

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
              ++ L         +  I R+KGLGEM   QL ET MD + R +L+V I   +     
Sbjct: 718 NEFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIG---- 773

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
                N LMG   + R  FI+  A  + ++ 
Sbjct: 774 ADQIFNTLMGDAVEPRRDFIESNALAVSNLD 804


>gi|159045895|ref|YP_001534689.1| DNA gyrase subunit B [Dinoroseobacter shibae DFL 12]
 gi|157913655|gb|ABV95088.1| DNA gyrase subunit B [Dinoroseobacter shibae DFL 12]
          Length = 805

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 221/573 (38%), Positives = 332/573 (57%), Gaps = 16/573 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
                 ++ Y A SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DN +DE +AG+
Sbjct: 2   AETAQVAEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGH 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ + V +  +  ++V DNGRGIPV  H +    S  E+I+T LHAGGKFD+++Y++SGG
Sbjct: 62  ADAVNVKIHADSSVSVSDNGRGIPVGVHEE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALSD L + + R       +F  G  +  LE      ++ GT + F    
Sbjct: 121 LHGVGVSVVNALSDWLELRIWRDGKEHVARFEHGDTVKHLEVIGDAGDRTGTEVRFMAST 180

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
             F +   +    L    +  A+L+  V+     ++        P + E ++ GG++ ++
Sbjct: 181 GTFSNL-DYSFKTLENRLRELAFLNSGVRIILEDER-----PAEPLRSELFYEGGVREFV 234

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +    +++    E      E+       +E A+ W +     +  + N I   +GGTH +
Sbjct: 235 RYLDRSKTSAMEEPIFITGERDDI---GIEVAMWWNDSYHETVLPFTNNIPQRDGGTHLA 291

Query: 333 GLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR I  YA+ +   +   ++   DD       +LSV + +P+F+ QTK KLVS 
Sbjct: 292 GFRGALTRTINAYAQSSGIAKREKVNFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 351

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           + +  VE  + +    +  +NP +A  ++  +IE +  R   RK RE   RKTA+    L
Sbjct: 352 EVRPAVEGLVNEKLGEWFEENPAQAKVIVGKIIEAALAREAARKARELTRRKTAMDVASL 411

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +ELF+VEGDSAGGSAKQ R+R NQAVLPLRGKILNV  A  +++ +
Sbjct: 412 PGKLADCQEKDPAHSELFLVEGDSAGGSAKQGRSRHNQAVLPLRGKILNVERARFDRMLS 471

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q+I  L+ ALG    R ++    LRY K+IIMTDADVDGAHI +LLLTFF+++M ++IE
Sbjct: 472 SQEIGTLITALGTGIGRDEFDIGKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPEIIE 531

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
             +L++  PPL+++ +G   VY  D+   +  L
Sbjct: 532 GGYLYIAQPPLYKVARGKSEVYLKDQAALEDHL 564



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L    + G+    + R+KGLGEM   QL ET +D   RTLL+V+I      L D  D 
Sbjct: 722 ALLSTILEEGEKGQSLQRYKGLGEMNPDQLWETTLDPEARTLLQVQIED----LADADDI 777

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R  FIQ+ A  ++++ 
Sbjct: 778 FTKLMGDVVEPRRAFIQQNALSVENLD 804


>gi|332139414|ref|YP_004425152.1| DNA gyrase subunit B [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549436|gb|AEA96154.1| DNA gyrase subunit B [Alteromonas macleodii str. 'Deep ecotype']
          Length = 806

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 229/576 (39%), Positives = 347/576 (60%), Gaps = 18/576 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           SA +NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I
Sbjct: 2   SAENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSEI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V +  +G ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  VVQIHSDGSVSVSDDGRGIPTELHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS  L + + R      Q++  G+P +PL       +K GT I F P    F 
Sbjct: 121 GVSVVNALSSRLKLRIRRGGKAHEQEYQHGVPQAPLAVTGDT-DKTGTMIRFWPSSDTFT 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           D   +    L K  +  ++L+  V      +++  E       + F + GG+K +++   
Sbjct: 180 DTL-YHYDILAKRLRELSFLNSGVSIRLKDERDGKE-------DHFMYEGGIKAFVEYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           + ++ +  ++F   +E++      VE A+ W +     +  + N I   +GGTH +G R 
Sbjct: 232 QKKTAVHQKVFHFSSEQED--GIAVEVAMQWNDSFQENVFCFTNNIPQRDGGTHLAGFRG 289

Query: 337 ALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K   +   DD       ++SV + +P+F+ QTK KLVS + + 
Sbjct: 290 ALTRTLNNYMEKEGLNKKAKTNASGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVRP 349

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE+A+ +    +L++NP E+  +   +I+ +  R   RK R    RK A+    LPGKL
Sbjct: 350 AVESAMNEKLAEFLLENPAESKIIAGKIIDAARAREAARKAREMTRRKGALDLAGLPGKL 409

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 410 ADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 469

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC   R +Y  E LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE+ ++
Sbjct: 470 ATLITALGCGIGRDEYDPEKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYV 529

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++  PPL+++ +G +  Y  D++     L      G
Sbjct: 530 YIAQPPLYKVKKGKQEQYLKDDDALTNYLTGIAIDG 565



 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G +       E  ++ L+      K    I R+KGLGEM   QL ET MD   R +L
Sbjct: 709 IKRGERKQ---PVESFKEALDWLMNEAKRGQYIQRYKGLGEMNPEQLWETTMDPEGRRML 765

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R +FI+  A  ++++ 
Sbjct: 766 QVTIEDAIGC----DQLFTTLMGDQVEPRREFIEANALKVENLD 805


>gi|329113486|ref|ZP_08242267.1| DNA gyrase subunit B [Acetobacter pomorum DM001]
 gi|326697311|gb|EGE48971.1| DNA gyrase subunit B [Acetobacter pomorum DM001]
          Length = 851

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 224/581 (38%), Positives = 336/581 (57%), Gaps = 17/581 (2%)

Query: 30  PDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDE 88
            D       + S+ YDA+SI +L+GL+ VR RPGMYIG TD+   LHH+  E+IDNA+DE
Sbjct: 41  TDLSQPTPSAVSEEYDAASISVLKGLDAVRKRPGMYIGDTDDGSGLHHMAFEIIDNAVDE 100

Query: 89  VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148
             AG+A+   V+ + +G ++V DNGRGIP + H +    S  E++LT LHAGGKF+ ++Y
Sbjct: 101 AQAGFASRCIVTFNADGSVSVRDNGRGIPTDMHTE-EGISAAEVVLTRLHAGGKFNQNSY 159

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG +VVNALS+ + V + R       +F  G   +PLE         GT +T
Sbjct: 160 KVSGGLHGVGAAVVNALSEWMEVRIWRNGQEHFIRFQHGERDAPLEVVGPSSEPSGTEVT 219

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F+P  + F     FD   L +  +  A+L+  ++      +          +E+F++ GG
Sbjct: 220 FKPSSETFPKT-DFDFTILERRLRELAFLNSGLEIVLRDAR-----VTPMREEKFFYEGG 273

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           L+ ++     +R+ + +   TG  E    +   VE+A+ W +     +  + N I   +G
Sbjct: 274 LEAFVDWLDRSRTSLFAPPITGSLE-NPDNGIKVEFALTWNDSFHETMLCFTNNIPQRDG 332

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           G H +G R ALTR + KYAE    K A+S+  +D+      +LSV + +P+F+ QTK KL
Sbjct: 333 GAHLAGFRQALTRVVGKYAESIAKKDALSLQGEDMREGLTAVLSVKVPDPKFSSQTKDKL 392

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRK 446
           VS + Q  V  A  D   H+   +P EA  ++  V++ +  R   RK RE+ R+   +  
Sbjct: 393 VSSEVQPVVHAAAADIISHWFETHPKEAKIVVSKVLDAASAREAARKARELTRRKGVLDV 452

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC        ELFIVEGDSAGG+AKQ R+R  QA+LPL+GKILNV  A  ++
Sbjct: 453 SSLPGKLADCQARDPAKAELFIVEGDSAGGTAKQGRDRRFQAILPLKGKILNVERARFDR 512

Query: 507 IRNNQQIMDLVQALGCRTRSQYREE------DLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           +  + +I  L+ ALG        E+       LRY +++IMTDADVDG+HI +LLLTFF+
Sbjct: 513 MLGSAEIGTLITALGTGIGRGEPEQGGFSIEKLRYHRIVIMTDADVDGSHIRTLLLTFFF 572

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++M +LIE+ +L++  PPL+R  +G +  Y  D+   ++ L
Sbjct: 573 RQMPELIERGYLYIAQPPLYRAKRGNEETYLKDDAALEQYL 613



 Score =  116 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 603 EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKL 662
                G+  + I+RFKGLGEM  +QL ET +D   RTLL+V +      +++  D    L
Sbjct: 772 RLLAQGRRGLTINRFKGLGEMNDAQLWETTLDPAMRTLLQVRVGD----VEEAGDVFTTL 827

Query: 663 MGTKADERFKFIQERASFIDDVG 685
           MG   + R  FI   A  + ++ 
Sbjct: 828 MGDIVEPRRDFIVGNALKVANLD 850


>gi|288959569|ref|YP_003449910.1| DNA gyrase subunit B [Azospirillum sp. B510]
 gi|288911877|dbj|BAI73366.1| DNA gyrase subunit B [Azospirillum sp. B510]
          Length = 827

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 235/592 (39%), Positives = 353/592 (59%), Gaps = 21/592 (3%)

Query: 26  SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDN 84
           + E   +    ++    +Y A SI +L GL+ VR RPGMYIG TD+   LHH+  EV+DN
Sbjct: 2   AQEALKNDLPQSEPQQADYGAESITVLRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDN 61

Query: 85  AMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144
           A+DE +AGY + +EV L+ +G +TV DNGRGIP + HP+    S  E+++T LHAGGKF+
Sbjct: 62  AIDEALAGYCDKVEVVLNADGSVTVRDNGRGIPTDIHPE-EGVSAAEVVMTQLHAGGKFN 120

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV----- 199
            ++Y++SGGLHGVG+SVVNALS+ L + + R    +S +F  G   +PL    +      
Sbjct: 121 QNSYKVSGGLHGVGVSVVNALSETLDLRIWRGGRTWSMRFRHGNAEAPLADVGEAPMVPE 180

Query: 200 --RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
             +   GT +TF P  + F +   FD A L    +  A+L+  V+   +  +        
Sbjct: 181 KGKPLSGTEVTFMPSAETFTNI-EFDFATLEHRLRELAFLNSGVRLLLTDAR-----GVE 234

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG--TVEWAIAWCEEN-PE 314
           P+ ++ ++ GGL+ ++     +++ +     T K+E+   H G  TVE A+ W +     
Sbjct: 235 PKVQDLHYEGGLEAFVSWLDRSKTALHKPAITLKSERPTEHGGVVTVECALQWNDSYHET 294

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSV 372
              + N I   +GGTH +G R ALTR I  YA  +    K  +++  DD       +LSV
Sbjct: 295 TLCFTNNIPQKDGGTHLAGFRAALTRAINNYAAESGIAKKEKVNLSGDDAREGLTCVLSV 354

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
            + +P+F+ QTK KLVS + +  VE  + +    Y  ++P +A ++++ V+E +  R   
Sbjct: 355 KVPDPKFSSQTKDKLVSSEVRPVVEAVVGEALAQYFEEHPADARRVVQKVVEAAAAREAA 414

Query: 433 RKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           RK RE+ RK+++    LPGKLADC +     +ELFIVEGDSAGGSAKQ R+R +QA+LPL
Sbjct: 415 RKAREMTRKSSLSMSSLPGKLADCQERDPALSELFIVEGDSAGGSAKQGRSRQSQAILPL 474

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIA 552
           RGKILNV  A  +K+ ++ +I  L+ ALG     ++  E  RY K+IIMTDADVDG+HI 
Sbjct: 475 RGKILNVERARLDKMLSSAEIGTLIAALGTGISDEFNAEKARYHKIIIMTDADVDGSHIR 534

Query: 553 SLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603
           +LLLTFF+++M DLIE+ +L++  PPL+RI +G  K  Y  D+   ++ L E
Sbjct: 535 TLLLTFFFRQMPDLIERGYLYIAQPPLYRIKRGNAKERYLKDDRALEEYLVE 586



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 4/78 (5%)

Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667
           G+  + I R+KGLGEM   QL ET +D +KR+LL+V +N         ++  + LMG   
Sbjct: 753 GRRGVTIQRYKGLGEMNPDQLWETTLDPSKRSLLQVRVNH----ADQAEEVFSTLMGDVV 808

Query: 668 DERFKFIQERASFIDDVG 685
           + R +FIQ+ A  + ++ 
Sbjct: 809 EPRREFIQDNALKVSNLD 826


>gi|331011884|gb|EGH91940.1| DNA gyrase subunit B [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 805

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 225/569 (39%), Positives = 341/569 (59%), Gaps = 19/569 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S +  YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I
Sbjct: 2   SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            + +  +  +TV DNGRGIPV+ H K    S  E+I+T L AGGKFD+++Y++SGGLHGV
Sbjct: 62  SIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLRAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+I F+P    F 
Sbjct: 121 GVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDTTGTQIHFKPSADTFK 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++   
Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++           G     VE A+ W +     +  + N I   +GGTH  G R 
Sbjct: 232 TNKTPVNEVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 289 ALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPGKL
Sbjct: 349 AVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 468

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++
Sbjct: 469 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++  PPL+++ +G +  Y  D+E  ++ +
Sbjct: 529 YIAQPPLYKVKKGKQEQYIKDDEAMEEYM 557



 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             ++ L         +  I R+KGLGEM   QL ET MD + R +L+V I   +      
Sbjct: 719 EFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIG----A 774

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
               N LMG   + R  FI+  A  + ++ 
Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804


>gi|56459116|ref|YP_154397.1| DNA gyrase subunit B [Idiomarina loihiensis L2TR]
 gi|56178126|gb|AAV80848.1| DNA gyrase subunit B [Idiomarina loihiensis L2TR]
          Length = 805

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 225/574 (39%), Positives = 345/574 (60%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
            +NY +SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I V
Sbjct: 3   ENNYGSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSEIMV 62

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +G ++V D+GRGIPV+ H +    S  ++I+T LHAGGKFD+++Y++SGGLHGVGI
Sbjct: 63  TIHSDGSVSVKDDGRGIPVDIHEE-EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGI 121

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L +T+ RQ  ++ Q +  G P S ++      +  GT + F P  + F D 
Sbjct: 122 SVVNALSEKLQLTIRRQGQVYEQTYHMGEPDSDVKPVGDT-DTTGTELRFWPSHETFTDT 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V      +++  E         F + GG+  ++    +N
Sbjct: 181 -EFHYDILAKRLRELSFLNSGVGIRLRDERDDREDL-------FKYEGGIAAFVNYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  + F   T+++      VE ++ W +     I  + N I   +GGTH +G R AL
Sbjct: 233 KTPIHEKAFYFTTQRED--GIGVEVSMQWNDSFQENIYCFTNNIPQRDGGTHLAGFRAAL 290

Query: 339 TRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  + E      K   S   DD       I+SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNSHMEKEGYNKKSKTSATGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E A+ +    YL++NP EA  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 351 EQAMNEQLADYLLENPGEAKLIINKIIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++ ++  
Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSVEVGT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ A+GC   R +Y  +  RY ++IIMTDADVDG+HI +LLLTFFY++M ++IE+ ++++
Sbjct: 471 LITAMGCGIGRDEYNPDKTRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYIYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G + VY  D+    + L       
Sbjct: 531 AQPPLYKVKKGKQEVYIKDDPALIRYLTSLALDN 564



 Score =  134 bits (336), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
           H  + +E      K  + + R+KGLGEM   QL ET MD + R +L+V I   +      
Sbjct: 719 HFVEAVEWLIGESKRGLYVQRYKGLGEMNPDQLWETTMDPDTRRMLQVTIEDAIG----A 774

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
                 LMG + + R  FI+  A  + ++ 
Sbjct: 775 DQLFTTLMGDEVEPRRAFIESNALKVANLD 804


>gi|329894833|ref|ZP_08270633.1| DNA gyrase subunit B [gamma proteobacterium IMCC3088]
 gi|328922727|gb|EGG30061.1| DNA gyrase subunit B [gamma proteobacterium IMCC3088]
          Length = 805

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 234/568 (41%), Positives = 339/568 (59%), Gaps = 18/568 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
           ++ NYD+SSI +L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + IE
Sbjct: 2   SNQNYDSSSITVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGFCSTIE 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           + +  +  +TV D+GRGIP E H      S  E+I+T LHAGGKFD++TY++SGGLHGVG
Sbjct: 62  IVVHPDESITVSDDGRGIPTEMHE--EGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS  L +TV RQ  +F Q +  G+P +PL    + +N  GT + F P P+ F +
Sbjct: 120 VSVVNALSSSLTLTVRRQGKVFEQHYQHGVPQAPLAVVGETQN-TGTTVRFSPSPETFSN 178

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  A+L+  V    + ++         E E + + GGL  ++     
Sbjct: 179 I-EFHFDILAKRLRELAFLNSGVNIKLTDERS-------GESETYNYDGGLGAFVDYLNR 230

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVA 337
           N++ I+        E        VE A+ W +   E    Y N I   +GGTH +G R A
Sbjct: 231 NKTPINKLFHFAN-EADEETGVAVEVALQWNDSFQENLLCYTNNIPQKDGGTHLAGFRAA 289

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTRG+  Y E      K  I    DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 290 LTRGLNSYIEREGLGKKAKIGTTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKTA 349

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454
           VE A+    + YL++NP +A  ++  +++ +  R   RK R    RK A+    LPGKLA
Sbjct: 350 VEQAMSARLNDYLLENPGDAKTIVGKMLDAARAREAARKAREMTRRKGALDIAGLPGKLA 409

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +E+++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+  + ++ 
Sbjct: 410 DCQEKDPALSEIYLVEGDSAGGSAKQGRNRKFQAILPLKGKILNVEKARFDKMLGSAEVG 469

Query: 515 DLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            +V ALGC    +  + E LRY  +IIMTDADVDG+HI +LLLTFF++ M +LIE+ H++
Sbjct: 470 TIVTALGCGIGKEEFDAEKLRYHSIIIMTDADVDGSHIRTLLLTFFFRHMRELIERGHIY 529

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +  PPL++I++G +S Y  D++     L
Sbjct: 530 IAQPPLYKISKGKQSQYLKDDDALNAFL 557



 Score =  150 bits (378), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G KS          + L            I R+KGLGEM   QL ET MD   R +L
Sbjct: 708 IRRGDKSQ---PVREFTEALAWLMTEAAKGYSIQRYKGLGEMNPEQLWETTMDPETRRML 764

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R +FI++ A  + ++ 
Sbjct: 765 QVTIEDAIM----ADQMFTTLMGDQVEPRREFIEQNALNVANLD 804


>gi|260223058|emb|CBA33241.1| DNA topoisomerase 4 subunit B [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 656

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 238/666 (35%), Positives = 339/666 (50%), Gaps = 38/666 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
             +  Y  SSIR+L+GLEPV+ RPGMY   T      H+  EV+DNA DE +AGY   I+
Sbjct: 4   KPTPEYSESSIRVLKGLEPVKQRPGMY---TRTDNPLHIIQEVLDNAADEALAGYGKKIK 60

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA---GGKFDNSTYEISGGLH 155
           V+L  +G ++V D+GRGIP   HP+      +E++ T LHA     K     Y  SGGLH
Sbjct: 61  VTLHADGSVSVEDDGRGIPFGMHPE-EKAPVIELVFTRLHAGGKFDKGKGGAYSFSGGLH 119

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS--PLEKKEKVRNKRGTRITFRPDP 213
           GVG+SV NAL   L  T  R+ ++    F  G       + K      K+GT +   PD 
Sbjct: 120 GVGVSVTNALGKRLEATSYREGSVAHLVFEGGDVTEALQVRKAGDGDRKQGTTVRVWPDA 179

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F          L  + +SKA L   V      +K         E + + + GGLK YL
Sbjct: 180 KYFESAV-LPMGELTHLLRSKAVLMPGVSVTLVNEK-------TKESQNWLYKGGLKDYL 231

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW----CEENPEITSYCNTILTDEGGT 329
              L    +I      G  +         E A        +  P   SY N I T  GGT
Sbjct: 232 GQTLSADPVIPMFDGEGFADGNNDTFAEGEGATWCVAFTEDGAPVRESYVNLIPTSAGGT 291

Query: 330 HESGLRVALTRGIKKY-AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           HESGLR  L + +K +    +   + + ++ +D+   A  +LS  + +P+F GQ K +L 
Sbjct: 292 HESGLRDGLFQAVKSFIEFHSLLPKGVKLMPEDVFARASYVLSAKVLDPQFQGQIKERLN 351

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR 448
           S DA R V + +R   + +L Q+     KL E  I+ ++ R +  ++ E  + + +  L 
Sbjct: 352 SRDAVRLVSSFVRPALELWLNQHVDYGKKLAELAIKAAQTRQKAGQKVEKRKSSGVAVL- 410

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
            PGKL DC        E+F+VEGDSAGGSAK  R++ NQA+LPLRGK+LN      +++ 
Sbjct: 411 -PGKLTDCESRDIAYNEVFLVEGDSAGGSAKMGRDKENQAILPLRGKVLNTWEVDRDRLF 469

Query: 509 NNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
            N +I D+  A+G          D   LRY KV I++DADVDG+HI  LLLT F++    
Sbjct: 470 ANTEIHDISVAIGVDPHGPNDTPDLSGLRYGKVCILSDADVDGSHIQVLLLTLFFRHFPK 529

Query: 566 LIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKIEISRF 617
           LIE  H+++  PPLFR+    +G K     YA DE     IL++ +K G  +G   ISRF
Sbjct: 530 LIETGHVYVARPPLFRVDAPARGKKPASKAYALDEGELTAILDKLRKEGVREGAWSISRF 589

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQE 676
           KGLGEM A QL +T ++ + R LL V +     +  DT+  I KLMG  +A  R + ++ 
Sbjct: 590 KGLGEMNAEQLWDTTLNPDTRRLLPVML--GAINFGDTEALITKLMGKGEASSRRELMEL 647

Query: 677 RASFID 682
               ++
Sbjct: 648 HGDSVE 653


>gi|192360461|ref|YP_001980528.1| DNA gyrase subunit B [Cellvibrio japonicus Ueda107]
 gi|190686626|gb|ACE84304.1| DNA gyrase, B subunit [Cellvibrio japonicus Ueda107]
          Length = 806

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 232/579 (40%), Positives = 340/579 (58%), Gaps = 21/579 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S  +NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGY   +
Sbjct: 2   SEENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGYCTEV 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V++  +  ++V DNGRGIPV+ H      S  E+I+T LHAGGKFD++TY++SGGLHGV
Sbjct: 62  RVTIHPDETVSVSDNGRGIPVDMHE--EGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGV 119

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+ L +T+ R   I  Q +  G+P +PL          GT I F+P  + F 
Sbjct: 120 GVSVVNALSEYLKLTIRRAGKIHEQIYCHGVPDAPLTVVGD-SVTTGTEIHFKPSAETFT 178

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V+     ++   E       E + + GGLK +++   
Sbjct: 179 NI-EFQYDILAKRLRELSFLNSGVRIVLKDERSGKE-------EIYQYEGGLKAFVEHLN 230

Query: 278 ENRSLISSEIFTG-KTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335
           +N++ I+  +       + G     VE A+ W +   E    Y N I   +GGTH +G R
Sbjct: 231 KNKTTINKMVHFVASGREDGI---GVEVALQWNDSFQENLFCYTNNIPQRDGGTHLAGFR 287

Query: 336 VALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR +  Y E     +        DD       I+SV + +P+F+ QTK KLVS + +
Sbjct: 288 AALTRLLNTYIEKEGIGKNAKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVK 347

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGK 452
             VE  + + F  YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGK
Sbjct: 348 TAVEQEMAEHFSSYLLENPNDAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGK 407

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +     +EL++VEGDSAGGSAKQ R R  QA+LPL+GKILNV  A  +K+ ++ +
Sbjct: 408 LADCQEKDPALSELYLVEGDSAGGSAKQGRARKTQAILPLKGKILNVEKARFDKMLSSAE 467

Query: 513 IMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +  L+ ALGC   +  Y  E LRY  +IIMTDADVDG+HI +LLLTFF+++M +LIE+ H
Sbjct: 468 VGTLITALGCGIGKEDYNPEKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMRELIERGH 527

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           +++  PPL++I +G +  Y  DE    + L +    G  
Sbjct: 528 IYIAQPPLYKIAKGKQEQYLKDEAAMTEFLTQAALDGSS 566



 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 4/85 (4%)

Query: 601 LEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660
           LE   K  +    I R+KGLGEM   QL ET M+   R +LRV I   +           
Sbjct: 725 LEWLMKESRKGYNIQRYKGLGEMNPEQLWETTMNPETRRMLRVTIQDAIT----ADQIFT 780

Query: 661 KLMGTKADERFKFIQERASFIDDVG 685
            LMG + + R  FI+  A  + ++ 
Sbjct: 781 TLMGDQVEPRRDFIETNALAVANLD 805


>gi|114561192|ref|YP_748705.1| DNA gyrase, B subunit [Shewanella frigidimarina NCIMB 400]
 gi|114332485|gb|ABI69867.1| DNA gyrase subunit B [Shewanella frigidimarina NCIMB 400]
          Length = 805

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 225/579 (38%), Positives = 348/579 (60%), Gaps = 18/579 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I 
Sbjct: 2   SENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDIT 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           +S+  +G ++V D+GRGIPV  H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG
Sbjct: 62  ISIHSDGSVSVKDDGRGIPVSIHEE-EGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS +L +T+ R   ++ Q ++ G+P +P+++        GT + F P    F D
Sbjct: 121 VSVVNALSQKLQLTIRRAGKVYEQFYTHGVPDAPIKEIGDAVK-TGTELRFWPSSDTFTD 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      +++  +       E F + GG+  ++     
Sbjct: 180 V-EFHFEILAKRVRELSFLNSGVGIRLVDERDGKD-------EFFKYEGGISAFVDYLNR 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ I+ ++F    E++     TVE A+ W +     I  + N I   +GGTH +G R A
Sbjct: 232 NKTPINKDVFHFSHERED--GITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLAGFRGA 289

Query: 338 LTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K   S   DD       ++SV + +P+F+ QTK KLVS + +  
Sbjct: 290 LTRNLNNYMEREGFNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSA 349

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454
           VE  + +  + YL++NP +A  ++  +++ +  R   RK R    RK A+    LPGKLA
Sbjct: 350 VEQTMGEQLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLA 409

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++ 
Sbjct: 410 DCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 469

Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            L+ ALGC   R +Y  +  RY  +IIMTDADVDG+HI +LLLTFF+++M +LI++ +++
Sbjct: 470 TLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIQRGYIY 529

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612
           +  PPLF++ +G +  Y  DE    + L      G    
Sbjct: 530 IAQPPLFKVKKGKQEQYLKDEPALTEYLTTQALDGTNIY 568



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           + L+      K  + I R+KGLGEM   QL ET MD   R +LRV I   +         
Sbjct: 722 EALDWTISEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLRVTIEDAV----AADQL 777

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
              LMG + + R +FI+  A  + ++ 
Sbjct: 778 FTCLMGDQVEPRREFIETNALNVANLD 804


>gi|92115637|ref|YP_575366.1| DNA gyrase subunit B [Nitrobacter hamburgensis X14]
 gi|91798531|gb|ABE60906.1| DNA gyrase subunit B [Nitrobacter hamburgensis X14]
          Length = 813

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 241/576 (41%), Positives = 342/576 (59%), Gaps = 14/576 (2%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAG 92
           A    +A   Y A SIR+L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG
Sbjct: 10  ADTEPAAPVEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAG 69

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           +A  +EV L+ +  +TV D+GRGIPV+ H K    S  E+I+T LHAGGKFD ++Y++SG
Sbjct: 70  HATRVEVILNADNSVTVRDDGRGIPVDIH-KGEGISAAEVIMTQLHAGGKFDQNSYKVSG 128

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS +L + + R++     +F+ G  ++PL+   +   KRGT +TF   
Sbjct: 129 GLHGVGVSVVNALSSKLILRIWRKDKEHLIEFAHGDAVAPLKVVGEANGKRGTEVTFLAS 188

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            + F +   +D A L    +  A+L+  V    S  +   EK      E+  + GG+  +
Sbjct: 189 RETFTNV-EYDFATLEHRLRELAFLNSGVNILLSDLRRAVEKR-----EQMMYDGGVVEF 242

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHE 331
           ++    N+  +  E    + +  G     VE A+ W +   E    + N I   +GGTH 
Sbjct: 243 VKYLDRNKKAMVPEPIMIRADMNG---LGVEAALWWNDSYHENVLCFTNNIPQRDGGTHL 299

Query: 332 SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           +G R ALTR +  YA+    K  I++  DD       +LSV + +P+F+ QTK KLVS +
Sbjct: 300 AGFRGALTRQVNGYADAMARKERIALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSE 359

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VEN + +    +  ++P EA  ++  V+E +  R   RK RE   RK A+    LP
Sbjct: 360 VRPVVENVINEALAAWFEEHPTEAKLIVGKVVEAAAAREAARKARELTRRKGALDVASLP 419

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +ELFIVEGDSAGGSAKQ RNR  QAVLPLRGKILNV  A  +K+ ++
Sbjct: 420 GKLADCQERDPAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERARFDKMLSS 479

Query: 511 QQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           +QI  L+ ALG     +  +   LRY K+I+MTDADVDGAHI +LLLTFF+++M  LIE 
Sbjct: 480 EQIGTLITALGTGIGREDFDLSKLRYHKIIVMTDADVDGAHIRTLLLTFFFRQMPTLIEA 539

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605
            HL++  PPL+++T+G    Y  DE   +  L E  
Sbjct: 540 GHLYIAQPPLYKVTRGKSEQYLKDERALEDYLIETG 575



 Score =  116 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 5/86 (5%)

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
           + E     G+  + + R+KGLGEM   QL ET +DA++R+LL+V+I      + +  D  
Sbjct: 732 LFEAVTDAGRKGVALQRYKGLGEMNPDQLWETTLDASERSLLQVKI----KEVDEADDIF 787

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
            KLMG   + R +FIQE +    +V 
Sbjct: 788 TKLMGDVVEPRREFIQENSLSA-NVD 812


>gi|239816401|ref|YP_002945311.1| DNA topoisomerase IV subunit B [Variovorax paradoxus S110]
 gi|239802978|gb|ACS20045.1| DNA topoisomerase (ATP-hydrolyzing) [Variovorax paradoxus S110]
          Length = 665

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 245/656 (37%), Positives = 352/656 (53%), Gaps = 38/656 (5%)

Query: 49  IRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLT 108
           IR+L+GLEPV+ RPGMY   T      H+  EV+DNA DE +AG+   I+V+L  +  ++
Sbjct: 23  IRVLKGLEPVKQRPGMY---TRTDNPLHVIQEVLDNAADEALAGHGKKIKVTLHADNSVS 79

Query: 109 VVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST---YEISGGLHGVGISVVNAL 165
           V D+GRGIP   HP+      +E++ T LHAGGKFD  +   Y  SGGLHGVG+SV NAL
Sbjct: 80  VEDDGRGIPFGLHPE-EKAPVVELVYTRLHAGGKFDKGSGGAYSFSGGLHGVGVSVTNAL 138

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLS--PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           S  L VT  R+ ++    FS G  +    + K E    K+GT +   PD K F   A   
Sbjct: 139 SKRLEVTTHREGSVARLAFSGGDVIEPLQVRKLEAGERKQGTTVRAWPDAKYFET-AALP 197

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
            A L  + +SKA L   V    + +K         E +++ + GGL  YL   L    +I
Sbjct: 198 MAELTHLLRSKAVLMPGVSVTLTVEK-------TKETQQWLYKGGLSDYLMQTLNGDPVI 250

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAW----CEENPEITSYCNTILTDEGGTHESGLRVALT 339
                +G  +K   +    E A        +  P   SY N I T  GGTHESGLR  L 
Sbjct: 251 PLFEGSGHADKNADNFAEGEGADWCVAFTEDGQPVRESYVNLIPTSAGGTHESGLRDGLF 310

Query: 340 RGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             +K + E  +   + + ++ +D+   A  +LS  + +P+F GQ K +L S DA R V +
Sbjct: 311 TAVKGFIELHSLLPKGVKLLPEDVFARASYVLSAKVLDPQFQGQIKERLNSRDAVRLVSS 370

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            +R   + +L Q+     +L E  I+ ++ R R  ++ E  + + +  L  PGKL DC  
Sbjct: 371 FVRPALELWLNQHVDYGRRLAELAIKAAQTRQRAGQKVEKRKGSGVAVL--PGKLTDCES 428

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E+F+VEGDSAGGSAK  R++ +QA+LPLRGK+LN      +++  N +I D+  
Sbjct: 429 KDISHNEVFLVEGDSAGGSAKMGRDKESQAILPLRGKVLNTWEVERDRLFANTEIHDISV 488

Query: 519 ALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           A+G          D   LRY K+ I++DADVDG+HI  LLLT F++    LIE  H+++ 
Sbjct: 489 AVGVDPHGPTDSPDMSGLRYGKICILSDADVDGSHIQVLLLTLFFRHFPKLIEAGHVYVA 548

Query: 576 SPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKIEISRFKGLGEMLASQ 627
            PPLFR+    +G K    VYA DE      L++ +K G  +G   ISRFKGLGEM A Q
Sbjct: 549 KPPLFRVDAPARGKKPASKVYALDEGELTATLDKLRKDGVREGAWSISRFKGLGEMSAEQ 608

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQERASFID 682
           L ET ++ + R L++V++         TQ  I KLMG  +A  R + ++ RA  +D
Sbjct: 609 LWETTLNPDTRRLMKVQL--GRFDFSSTQGEITKLMGKGEAAARRELMELRADDVD 662


>gi|148358143|ref|YP_001249350.1| DNA gyrase subunit B [Legionella pneumophila str. Corby]
 gi|148279916|gb|ABQ54004.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella
           pneumophila str. Corby]
          Length = 805

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 230/576 (39%), Positives = 357/576 (61%), Gaps = 19/576 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S   +YD+++I++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGY   I
Sbjct: 2   SVDASYDSNNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDESLAGYCKEI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V++  +  +TV D+GRGIPV+ H K   KS  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  FVTIHSDESITVKDDGRGIPVDIH-KEEGKSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+ELH+ V R   ++ Q +  G+P SP+ +  +  N  GT+I F+P  + F 
Sbjct: 121 GVSVVNALSEELHLLVRRHGKVYEQHYRHGVPESPIAETGE-SNSTGTQIWFKPSAETFS 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  +YL+  V      ++         +K+ F++ GG+K +++   
Sbjct: 180 NI-EFHYDILAKRLRELSYLNSGVCIHLFDER-------TQKKDTFHYEGGIKAFVEHLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           +N++ +   +F+  +EK G     +E A+ W +     I  + N I   +GGTH +G R 
Sbjct: 232 KNKTPVHPVVFSMTSEKDGI---VIELAMQWNDGYQETIFCFTNNIPQRDGGTHMAGFRA 288

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  +S   DD       +LSV + +P+F+ QTK KLVS + + 
Sbjct: 289 ALTRTLNNYIENEGYAKKAKVSPTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKP 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE+ + + F+ +L++NP  A  ++  +I+ +  R   R+ R    RK A+    LPGKL
Sbjct: 349 AVESCVAEKFNDFLLENPTAAKSIVAKIIDAARAREAARRAREMTRRKGALDIAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL++VEGDSAGGSAKQAR+R  QA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 409 ADCQEKDPSLSELYLVEGDSAGGSAKQARDRKFQAILPLKGKILNVEKARFDKMLSSQEV 468

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC     +Y  + +RY ++IIMTDADVDG+HI +LLLTFFY++  +L+E+ ++
Sbjct: 469 ATLITALGCGIGPEEYDPDKVRYHRIIIMTDADVDGSHIRTLLLTFFYRQTRELLERGYI 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++  PPL+++ +G +  Y  D+E     L +    G
Sbjct: 529 YIAQPPLYKVKRGKQEQYVKDDEALFDYLTQCALDG 564



 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G KS+     E+ +++L       K    I R+KGLGEM   QL ET MD   R +L
Sbjct: 708 IQRGDKSL---PVENFEQVLNWLMDEAKKGQTIQRYKGLGEMNPEQLWETTMDPEVRRML 764

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +       +    LMG   + R  FI+  A   +++ 
Sbjct: 765 QVSIEDAV----AADEIFTTLMGDNVEPRRDFIETNALDAENID 804


>gi|157959834|ref|YP_001499868.1| DNA gyrase subunit B [Shewanella pealeana ATCC 700345]
 gi|157844834|gb|ABV85333.1| DNA gyrase, B subunit [Shewanella pealeana ATCC 700345]
          Length = 813

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 223/576 (38%), Positives = 348/576 (60%), Gaps = 18/576 (3%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVI 90
           +    N  + ++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +
Sbjct: 2   NNRRENNMSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEAL 61

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AG+ N + +++  +G ++V D+GRGIPV  H +    S  E+I+T LHAGGKFD+++Y++
Sbjct: 62  AGHCNDVIITIHADGSVSVRDDGRGIPVSIHEE-EGISAAEVIMTVLHAGGKFDDNSYKV 120

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS +L +T+ R   ++ Q ++ G+P +P+    +     GT I F 
Sbjct: 121 SGGLHGVGVSVVNALSSKLQMTIRRDGKVYEQFYTHGVPDAPIAPIGEATK-TGTEIRFW 179

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F D   F    L K  +  ++L+  V      +++  +       E F + GG+ 
Sbjct: 180 PSTETFTDVL-FHFDILAKRVRELSFLNSGVGIRLVDERDNRD-------EFFKYEGGIS 231

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            ++     N++ ++ E+F    E++     TVE A+ W +     I  + N I   +GGT
Sbjct: 232 AFVDYLNVNKTPVNKEVFHFCQERED--GITVEVAMQWNDGFQENIFCFTNNIPQRDGGT 289

Query: 330 HESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R ALTR +  Y E      K   +   DD       ++SV + +P+F+ QTK KL
Sbjct: 290 HLAGFRGALTRNLNNYMEREGYNKKGKTAATGDDAREGLTAVISVKVPDPKFSSQTKDKL 349

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRK 446
           VS + +  VE  + +    YL+++P EA  ++  +I+ +  R   RK R    RK A+  
Sbjct: 350 VSSEVKSAVEQTMGEQLGDYLMEHPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDL 409

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 410 GGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 469

Query: 507 IRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           + ++Q++  L+ ALGC   R +Y  +  RY  ++IMTDADVDG+HI +LLLTFF+++M +
Sbjct: 470 MLSSQEVATLITALGCGIGRDEYNPDKTRYHNIVIMTDADVDGSHIRTLLLTFFFRQMPE 529

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           LIE+ ++++  PPL+++ +G +  Y  D+    + L
Sbjct: 530 LIERGYVYIAQPPLYKVKKGKQEQYLKDDPALTEYL 565



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           + L+      K  + I R+KGLGEM   QL ET MD   R +L+V I   +         
Sbjct: 730 EALDWLMNESKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIEDAIG----ADQL 785

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
              LMG + + R  FI+  A  + ++ 
Sbjct: 786 FTCLMGDQVEPRRDFIEANALNVANLD 812


>gi|54292968|ref|YP_125383.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella
           pneumophila str. Lens]
 gi|53752800|emb|CAH14234.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella
           pneumophila str. Lens]
          Length = 805

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 230/576 (39%), Positives = 357/576 (61%), Gaps = 19/576 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S   +YD+++I++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGY   I
Sbjct: 2   SVDASYDSNNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDESLAGYCKEI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V++  +  +TV D+GRGIPV+ H K   KS  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  FVTIHSDESITVKDDGRGIPVDIH-KEEGKSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+ELH+ V R   ++ Q +  G+P SP+ +  +  N  GT+I F+P  + F 
Sbjct: 121 GVSVVNALSEELHLLVRRHGKVYEQHYRHGVPESPIAETGEA-NSTGTQIWFKPSAETFS 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  +YL+  V      ++         +K+ F++ GG+K +++   
Sbjct: 180 NI-EFHYDILAKRLRELSYLNSGVCIHLFDER-------TQKKDTFHYEGGIKAFVEHLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           +N++ +   +F+  +EK G     +E A+ W +     I  + N I   +GGTH +G R 
Sbjct: 232 KNKTPVHPVVFSMTSEKDGI---VIELAMQWNDGYQETIFCFTNNIPQRDGGTHMAGFRA 288

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  +S   DD       +LSV + +P+F+ QTK KLVS + + 
Sbjct: 289 ALTRTLNNYIENEGYAKKAKVSPTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKP 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE+ + + F+ +L++NP  A  ++  +I+ +  R   R+ R    RK A+    LPGKL
Sbjct: 349 AVESCVAEKFNDFLLENPTAAKSIVAKIIDAARAREAARRAREMTRRKGALDIAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL++VEGDSAGGSAKQAR+R  QA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 409 ADCQEKDPSLSELYLVEGDSAGGSAKQARDRKFQAILPLKGKILNVEKARFDKMLSSQEV 468

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC     +Y  + +RY ++IIMTDADVDG+HI +LLLTFFY++  +L+E+ ++
Sbjct: 469 ATLITALGCGIGPEEYDPDKVRYHRIIIMTDADVDGSHIRTLLLTFFYRQTRELLERGYI 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++  PPL+++ +G +  Y  D+E     L +    G
Sbjct: 529 YIAQPPLYKVKRGKQEQYVKDDEALFDYLTQCALDG 564



 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G KS+     E+ +++L       K    I R+KGLGEM   QL ET MD   R +L
Sbjct: 708 IQRGDKSL---PVENFEQVLNWLMDEAKKGQTIQRYKGLGEMNPEQLWETTMDPEVRRML 764

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +       +    LMG   + R  FI+  A   +++ 
Sbjct: 765 QVSIEDAV----AADEIFTTLMGDNVEPRRDFIESNALDAENID 804


>gi|328952219|ref|YP_004369553.1| DNA gyrase, B subunit [Desulfobacca acetoxidans DSM 11109]
 gi|328452543|gb|AEB08372.1| DNA gyrase, B subunit [Desulfobacca acetoxidans DSM 11109]
          Length = 803

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 231/572 (40%), Positives = 344/572 (60%), Gaps = 18/572 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y A +IR+L GLE VR RP MYIG T  + LHHL  EV+DN++DE +AGY N I+V++ 
Sbjct: 14  DYGADNIRVLGGLEAVRQRPSMYIGNTGPEGLHHLVYEVVDNSIDEALAGYCNQIQVTIH 73

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV DNGRGIPV+ H K  N   +E+++T LHAGGKFD+ TY++SGGLHGVG+SVV
Sbjct: 74  SDNSVTVEDNGRGIPVDLH-KEENLPAVEVVMTKLHAGGKFDHKTYQVSGGLHGVGVSVV 132

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+ L V + R   ++ Q++ +G   + L    + +  RGT+I+F+PD +IF +   F
Sbjct: 133 NALSEYLEVEIRRDGRVYHQRYEQGNTSTQLAITGETKR-RGTKISFKPDAEIFSE-TTF 190

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L    +  ++L+  V+     ++   +         FY+ GG++ ++     N++L
Sbjct: 191 SYDILATRLRELSFLNRGVRIMLEDERSGKKND-------FYYEGGIQEFVIFLNRNKTL 243

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +          +       +E A  + +    +I +Y N I T EGGTH SG +  LTR 
Sbjct: 244 MHEPPIYLNGSR---AEVIIEIAFQYNDTYNEQIFTYANNINTREGGTHLSGFKAGLTRC 300

Query: 342 IKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I +Y       + +      DD+     G++S+ + +P+F GQTKTKL + D +  VEN 
Sbjct: 301 INQYMATADLPKNLKEHLTGDDVREGLTGVISIKLPDPQFEGQTKTKLGNSDIKGLVENL 360

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    YL +NP  A ++L  VIE +  R   R+ +E   +K  + +L LPGKLADC +
Sbjct: 361 VYENLLTYLGENPTIAKQILAKVIEAARAREAARRAKELARKKGGLSELALPGKLADCQE 420

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 EL++VEGDSAGGSAKQAR+R  QA+LPL+GKILNV  A  +K+  +Q+I  L+ 
Sbjct: 421 RDPSRRELYLVEGDSAGGSAKQARDRRFQAILPLKGKILNVEKARYDKMLQSQEIRTLIT 480

Query: 519 ALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
           ALG     + ++ E LRY ++IIMTDADVDG+HI +LLLTFFY++M +LI + +L++  P
Sbjct: 481 ALGAGIGKEEQDLEKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMAELISRGYLYIAQP 540

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGK 609
           PL+R+T+G + +Y  DE   Q  L       K
Sbjct: 541 PLYRLTRGNEKIYLKDEGPFQDYLLARGLDKK 572



 Score =  148 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 8/110 (7%)

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PP +R+ +G K+    +    +++++     G+  + + RFKGLGEM   QL ET MD 
Sbjct: 701 QPP-YRLQEGAKT---WEIATLEELVQVVLNEGQKGLSVQRFKGLGEMNPEQLWETTMDP 756

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             RTLL+V I   +       +    LMG K + R  FIQ  A  +  + 
Sbjct: 757 ETRTLLQVNIEDAV----AADEIFTILMGDKVEPRRDFIQNNALELSQLD 802


>gi|85857848|ref|YP_460050.1| DNA gyrase subunit B [Syntrophus aciditrophicus SB]
 gi|85720939|gb|ABC75882.1| DNA gyrase subunit B [Syntrophus aciditrophicus SB]
          Length = 800

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 239/583 (40%), Positives = 345/583 (59%), Gaps = 27/583 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +DNY A SI+ILEGLE VR+RP MYIG   ++ LHHL  EV+DN++DE  AGY + I V 
Sbjct: 2   TDNYSADSIKILEGLEAVRVRPAMYIGSIGKEGLHHLVYEVVDNSIDEASAGYCDKITVK 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  + V DNGRGIPV+ H      S  E+++T LHAGGKF N +Y+ISGGLHGVG+S
Sbjct: 62  IRVDNSIMVEDNGRGIPVDMHE--TGVSAAEVVMTKLHAGGKFSNDSYKISGGLHGVGVS 119

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  + + V R   ++SQ + RG+P +PL    +    RGT+I F+PD  IF +  
Sbjct: 120 VVNALSSSMELNVRRDGKVYSQSYVRGVPTAPLAVTGQTSG-RGTKIYFKPDDTIFEE-L 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F+   L    +  A+L+  V+     D+          K EF++ GG+ ++++    N+
Sbjct: 178 EFNFDILANRLRELAFLNSGVRIALIDDRS-------DRKSEFFYEGGIISFVEYINRNK 230

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
            ++  +      E++ +   TVE A+ + +     I S+ N+I T EGGTH SG R ALT
Sbjct: 231 KVLHKDPIYVSGEREDS---TVEVALQYNDTYTENIFSFANSINTTEGGTHLSGFRSALT 287

Query: 340 RGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R    YA      +        +DL      ++SV ++ P+F GQTKTKL + + +  VE
Sbjct: 288 RVFNNYAVNNGLLKNGKESLRGEDLREGLACVISVKVQNPQFEGQTKTKLGNSEVRGLVE 347

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
             + +    YL +NP  A +LL   +E S  R   R+ RE   RK+A+    LPGKLADC
Sbjct: 348 GIVYEKIGSYLEENPSVAKQLLNKCLEASRAREAARRARELTRRKSALEVGALPGKLADC 407

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            +     +EL++VEGDSAGGSAKQ R+R NQA+LPLRGK+LNV  A  +K+  N++I  +
Sbjct: 408 QERDPARSELYLVEGDSAGGSAKQGRDRRNQAILPLRGKVLNVEKARFDKMLQNEEIKTM 467

Query: 517 VQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           + ALG     +  +   +RY KVIIMTDADVDG+HI +LLLTFF+++M +L+E+ +L++ 
Sbjct: 468 ITALGTGIGQEDYDVSRIRYHKVIIMTDADVDGSHIRTLLLTFFFRQMRELVEKGYLYIA 527

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
            PPLF+IT+    VY  +EE     + +          + R K
Sbjct: 528 QPPLFKITEKKNEVYIRNEEEMNNFILQNG--------VKRIK 562



 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 4/78 (5%)

Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667
           GK  + + R+KGLGEM   QL ET M+  KRTLL+V ++  +       +    LMG + 
Sbjct: 726 GKKGLSVQRYKGLGEMNPEQLWETTMNPEKRTLLQVRVDDAV----QADEIFTTLMGDQV 781

Query: 668 DERFKFIQERASFIDDVG 685
           + R +FI + A ++ ++ 
Sbjct: 782 EPRREFIYQNALYVSNLD 799


>gi|54295987|ref|YP_122356.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella
           pneumophila str. Paris]
 gi|53749772|emb|CAH11152.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella
           pneumophila str. Paris]
          Length = 805

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 229/576 (39%), Positives = 357/576 (61%), Gaps = 19/576 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S   +YD+++I++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGY   I
Sbjct: 2   SVDASYDSNNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDESLAGYCKEI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V++  +  +TV D+GRGIPV+ H K   KS  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  FVTIHSDESITVKDDGRGIPVDIH-KEEGKSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+ELH+ V R   ++ Q +  G+P SP+ +  +  N  GT+I F+P  + F 
Sbjct: 121 GVSVVNALSEELHLLVRRHGKVYEQHYRHGVPESPIAETGEA-NSTGTQIWFKPSAETFS 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  +YL+  V      ++         +K+ F++ GG+K +++   
Sbjct: 180 NI-EFHYDILAKRLRELSYLNSGVCIHLFDER-------TQKKDTFHYEGGIKAFVEHLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           +N++ +   +F+  +EK G     +E A+ W +     I  + N I   +GGTH +G R 
Sbjct: 232 KNKTPVHPVVFSMTSEKDGI---VIELAMQWNDGYQETIFCFTNNIPQRDGGTHMAGFRA 288

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  +S   DD       +LSV + +P+F+ QTK KLVS + + 
Sbjct: 289 ALTRTLNNYIENEGYAKKAKVSPTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKP 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE+ + + F+ +L++NP  +  ++  +I+ +  R   R+ R    RK A+    LPGKL
Sbjct: 349 AVESCVAEKFNDFLLENPTASKSIVAKIIDAARAREAARRAREMTRRKGALDIAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL++VEGDSAGGSAKQAR+R  QA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 409 ADCQEKDPSLSELYLVEGDSAGGSAKQARDRKFQAILPLKGKILNVEKARFDKMLSSQEV 468

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC     +Y  + +RY ++IIMTDADVDG+HI +LLLTFFY++  +L+E+ ++
Sbjct: 469 ATLITALGCGIGPEEYDPDKVRYHRIIIMTDADVDGSHIRTLLLTFFYRQTRELLERGYI 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++  PPL+++ +G +  Y  D+E     L +    G
Sbjct: 529 YIAQPPLYKVKRGKQEQYVKDDEALFDYLTQCALDG 564



 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G KS+     E+ +++L       K    I R+KGLGEM   QL ET MD   R +L
Sbjct: 708 IQRGDKSL---PVENFEQVLNWLMDEAKKGQTIQRYKGLGEMNPEQLWETTMDPEVRRML 764

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +       +    LMG   + R  FI+  A   +++ 
Sbjct: 765 QVSIEDAV----AADEIFTTLMGDNVEPRRDFIETNALDAENID 804


>gi|332041519|gb|EGI77880.1| DNA topoisomerase IV subunit B [Hylemonella gracilis ATCC 19624]
          Length = 660

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 242/667 (36%), Positives = 350/667 (52%), Gaps = 32/667 (4%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
               +  Y   SIR+L+GLEPV+ RPGMY   T      H+  EV+DNA DE +AG+   
Sbjct: 2   ATKPTPEYSEGSIRVLKGLEPVQQRPGMY---TRTDNPLHIIQEVLDNAADEALAGHGKR 58

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST---YEISGG 153
           I V L  +G ++V D+GRGIP   HP+      +EI+ T LHAGGKFD  +   Y  SGG
Sbjct: 59  IAVILHADGSVSVEDDGRGIPHGLHPE-EKVPVIEIVYTRLHAGGKFDKGSGGAYSFSGG 117

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRG--IPLSPLEKKEKVRNKRGTRITFRP 211
           LHGVG+SV NAL+  L V   R+  + +  F+ G          ++    K GT +   P
Sbjct: 118 LHGVGVSVTNALAKRLEVMSYREGQVATMAFAGGAVEEKLRARAQKSEDRKSGTTVRVWP 177

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           D K F   A      L  + +SKA L   V    + +K    K    + + + + GGL+ 
Sbjct: 178 DAKYFES-AALPMGELTHLLRSKAVLMPGVTVTLTVEKGKDGKAS--DTQTWLYKGGLRD 234

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTH--RGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           YL   L    +I      G      +        WA+A+ E+  P   SY N I T  GG
Sbjct: 235 YLMQTLTADPVIPLFEGEGYAVDNDSFAEGEGAAWAVAFTEDGAPVRESYVNLIPTSAGG 294

Query: 329 THESGLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           TH+SGLR  L   +K + +  +   + + ++ +D+   A  +LS  + +P+F GQ K +L
Sbjct: 295 THDSGLRDGLFNAVKSFIDLHSLLPKGVKLLPEDVFARASYVLSAKVLDPQFQGQIKERL 354

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL 447
            S DA R V + +R   + +L Q+     KL E  I  ++ R R  ++ E  + + +  L
Sbjct: 355 NSRDAVRLVSSFVRPALELWLNQHVEYGKKLAELAIRAAQTRQRAGQKVEKKKGSGVAVL 414

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
             PGKL DC        ELF+VEGDSAGGSAK  R++ +QA+LPLRGK+LN      +++
Sbjct: 415 --PGKLTDCESKDLAHNELFLVEGDSAGGSAKMGRDKESQAILPLRGKVLNTWEVERDRL 472

Query: 508 RNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
             N +I D+  A+G        E D   LRY K+ I++DADVDG+HI  LLLT F++   
Sbjct: 473 FANTEIHDISVAIGVDPHGPNDEPDLSGLRYGKICILSDADVDGSHIQVLLLTLFFRHFP 532

Query: 565 DLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKIEISR 616
            LIE  H+++  PPLFR+    +G K     YA DE     IL++  K G  K + +ISR
Sbjct: 533 KLIETGHVYVARPPLFRVDVPARGKKPASKAYALDEGELTAILDKTAKEGVAKERCQISR 592

Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQ 675
           FKGLGEM A QL ET ++ + R LL+V++       + T+  I KLMG  +A  R + ++
Sbjct: 593 FKGLGEMNAEQLWETTLNPDTRRLLQVQL--GGYDTRQTEGEITKLMGKGEAAARRELME 650

Query: 676 ERASFID 682
                ++
Sbjct: 651 LHGDSVE 657


>gi|332171719|gb|AEE20973.1| DNA gyrase, B subunit [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 806

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 220/574 (38%), Positives = 343/574 (59%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
            + YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I V
Sbjct: 4   ENKYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTNINV 63

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            +  +G ++V D+GRGIP E H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 64  KIHTDGSVSVKDDGRGIPTEIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 122

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS  L + + R   +  Q++  G+P  PLE   +  +  GT I F P  + F   
Sbjct: 123 SVVNALSRRLQILIRRAGKVHEQEYQHGVPQKPLEVIGE-SDTSGTSIRFWPSEETFTGI 181

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V      +++        +++ F + GG++ +++   +N
Sbjct: 182 -EFHYDILAKRLRELSFLNSGVSIILEDERD-------GKRDHFMYEGGIQAFVEYLNQN 233

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ +  ++F   +E+      +VE A+ W +     +  + N I   +GG+H +G R AL
Sbjct: 234 KTPVHQQVFHFNSERDD--GISVEVALQWNDSFQENVFCFTNNIPQRDGGSHLAGFRGAL 291

Query: 339 TRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  + E      K   S   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 292 TRTLNAFMEKEGHNKKNKTSASGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVRPAV 351

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLAD 455
           E  + +  + +L++NP  +  ++  +I+ +  R   RK      RK A+    LPGKLAD
Sbjct: 352 ETVMGEKLNEFLLENPSASKIIINKIIDAARAREAARKARDMTRRKGALDLAGLPGKLAD 411

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 412 CQEKDPSLSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 471

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  E LRY ++IIMTDADVDG+HI +LLLTFFY++M ++IE+ ++++
Sbjct: 472 LITALGCGIGRDEYDPEKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYIYI 531

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL++  +G +  Y  D++   K L       
Sbjct: 532 AQPPLYKTKKGKQEQYLKDDDSLTKYLTAIALDN 565



 Score =  133 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +  K             L    K G+    I R+KGLGEM   QL ET MD   R +L
Sbjct: 709 VKRNDKVKPIFSFAEGLDWLMAESKKGQY---IQRYKGLGEMNPEQLWETTMDPGSRRML 765

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V++   +            LMG   + R  FI++ A  + ++ 
Sbjct: 766 QVKVEDAI----AADQLFTTLMGDHVEPRRAFIEDNALRVANLD 805


>gi|167621945|ref|YP_001672239.1| DNA gyrase subunit B [Shewanella halifaxensis HAW-EB4]
 gi|167351967|gb|ABZ74580.1| DNA gyrase, B subunit [Shewanella halifaxensis HAW-EB4]
          Length = 813

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 223/572 (38%), Positives = 347/572 (60%), Gaps = 18/572 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYA 94
            N  + ++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ 
Sbjct: 6   ENNMSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHC 65

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           N + +++  +G ++V D+GRGIPV  H +    S  E+I+T LHAGGKFD+++Y++SGGL
Sbjct: 66  NDVIITIHADGSVSVRDDGRGIPVSIHEE-EGISAAEVIMTVLHAGGKFDDNSYKVSGGL 124

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS +L +T+ R   ++ Q ++ G+P +P+    +     GT I F P  +
Sbjct: 125 HGVGVSVVNALSSKLQMTIRRDGKVYEQFYTHGVPDAPIAPIGEATK-TGTEIRFWPSTE 183

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
            F D   F    L K  +  ++L+  V      +++  +       E F + GG+  ++ 
Sbjct: 184 TFTDVL-FHFDILAKRVRELSFLNSGVGIRLVDERDNRD-------EFFKYEGGISAFVD 235

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               N++ ++ E+F    E++     TVE A+ W +     I  + N I   +GGTH +G
Sbjct: 236 YLNVNKTPVNKEVFHFCQERED--GITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAG 293

Query: 334 LRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y E      K   +   DD       ++SV + +P+F+ QTK KLVS +
Sbjct: 294 FRGALTRNLNNYMEREGYNKKGKTAATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSE 353

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLP 450
            +  VE  + +    YL+++P EA  ++  +I+ +  R   RK R    RK A+    LP
Sbjct: 354 VKSAVEQTMGEQLGDYLMEHPNEAKMIVGKIIDAARAREAARKAREMTRRKGALDLGGLP 413

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 414 GKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 473

Query: 511 QQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           Q++  L+ ALGC   R +Y  +  RY  ++IMTDADVDG+HI +LLLTFF+++M +LIE+
Sbjct: 474 QEVATLITALGCGIGRDEYNPDKTRYHNIVIMTDADVDGSHIRTLLLTFFFRQMPELIER 533

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
            ++++  PPL+++ +G +  Y  D+    + L
Sbjct: 534 GYVYIAQPPLYKVKKGKQEQYLKDDPALTEYL 565



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           + L+      K  + I R+KGLGEM   QL ET MD   R +L+V I   +         
Sbjct: 730 EALDWLMNESKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIEDAIG----ADQL 785

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
              LMG + + R  FI+  A  + ++ 
Sbjct: 786 FTCLMGDQVEPRRDFIEANALNVANLD 812


>gi|170743430|ref|YP_001772085.1| DNA gyrase, B subunit [Methylobacterium sp. 4-46]
 gi|168197704|gb|ACA19651.1| DNA gyrase, B subunit [Methylobacterium sp. 4-46]
          Length = 808

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 237/582 (40%), Positives = 347/582 (59%), Gaps = 16/582 (2%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIA 91
              A     D Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +A
Sbjct: 2   AEPARDLTPDTYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+A L+ V+L+ +G  TV DNGRGIP + H +    S  E+I+T LHAGGKFD ++Y++S
Sbjct: 62  GHATLVTVTLNPDGSCTVSDNGRGIPTDIHAE-EGVSAAEVIMTQLHAGGKFDQNSYKVS 120

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS  L + + R     + +F  G  ++PL       ++RGT +TF P
Sbjct: 121 GGLHGVGVSVVNALSTWLRLRIWRGGQEHAMEFRHGDAVAPLAVVGPAGDRRGTEVTFLP 180

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F     FD A L K  +  A+L+  V+   +  +    K      EE  + GG++ 
Sbjct: 181 STETFS-MVEFDYATLEKRLRELAFLNSGVRIVLTDARHAEHKR-----EELVYEGGVEA 234

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++     ++ + ++    + E+ G    +VE A+ W +     +  + N I   +GGTH
Sbjct: 235 FVRYLDRTKTPLVAKPVVVRAERDGI---SVEVALWWNDSYHETVLPFTNNIPQRDGGTH 291

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR I  YAE +    K  +++  DD       I+SV + +P+F+ QTK KLV
Sbjct: 292 MAGFRAALTRQITGYAESSGIAKKEKVTLTGDDCREGLTAIISVKVPDPKFSSQTKDKLV 351

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447
           S + +  VE  L +   ++L +NP EA  ++  V E +  R   RK RE   RK A+   
Sbjct: 352 SSEVRPVVEAVLGEGLSNWLEENPGEARTIVGKVAEAAAAREAARKARELTRRKGALDIA 411

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +      E+ +VEGDSAGGSAKQ R+R+ QAVLPLRGKILNV  A  +K+
Sbjct: 412 SLPGKLADCQERDPSKCEILLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERARFDKM 471

Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
            ++Q+I  L+ ALG    R ++  + LRY ++IIMTDADVDG+HI +LLLTFF+++M +L
Sbjct: 472 LSSQEIGTLITALGTGIGREEFNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFFRQMPEL 531

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           IE+ HL++  PPL++ ++G   +Y  DE   +  L +    G
Sbjct: 532 IERGHLYIAQPPLYKASKGRSHLYLKDERALEDYLIDGGVEG 573



 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            + E     G+  +++ R+KGLGEM A QL ET +D + R+LL+V++        D  D 
Sbjct: 725 ALFETTMALGRKGLQLQRYKGLGEMTAQQLWETTLDRDVRSLLQVKV----KDTTDADDL 780

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R +FIQE A  + ++ 
Sbjct: 781 FVKLMGDVVEPRREFIQENALNVANLD 807


>gi|325291465|ref|YP_004277329.1| DNA gyrase subunit B [Agrobacterium sp. H13-3]
 gi|325059318|gb|ADY63009.1| DNA gyrase subunit B [Agrobacterium sp. H13-3]
          Length = 811

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 235/575 (40%), Positives = 342/575 (59%), Gaps = 16/575 (2%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIA 91
            + +   A+  Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +A
Sbjct: 4   TSSSEVGANTEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALA 63

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+A+L+ V+L+ +G +TV DNGRGIP + H      S  E+I+T LHAGGKFD ++Y++S
Sbjct: 64  GHADLVTVTLNADGSVTVTDNGRGIPTDIHS-SEGVSAAEVIMTQLHAGGKFDQNSYKVS 122

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS  L + + R   +    F+ G+  +PL    +   + GT +TF  
Sbjct: 123 GGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGRSGTEVTFLA 182

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
            P  F     +D   L    +  A+L+  V+   +  +    K     +EE  + GGL+ 
Sbjct: 183 SPDTFT-MTDYDFGTLEHRLRELAFLNSGVRIVLTDKRHSDIK-----QEELLYDGGLEA 236

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTH 330
           +++     +  +  +      EK G    TVE A+ W +   E    + N I   +GGTH
Sbjct: 237 FVRYLDRAKKPLVDKPVAIHGEKDGI---TVEVALWWNDSYHENVLCFTNNIPQRDGGTH 293

Query: 331 ESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  YAE +   +   +    +D       ILSV + +P+F+ QTK KLV
Sbjct: 294 MAGFRAALTRQMTSYAETSGIMKREKVSLQGEDCREGLTAILSVKVPDPKFSSQTKDKLV 353

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447
           S + +  VE+ + +    +L ++P +A  L+  V+E +  R   RK RE   RK A+   
Sbjct: 354 SSEVRPVVESLVNEALSTWLEEHPSDAKILVGKVVEAAIAREAARKARELTRRKGALDIA 413

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADCS+     +ELF+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +K+
Sbjct: 414 SLPGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFDKM 473

Query: 508 RNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
            ++Q+I  L+ ALG          + LRY K+IIMTDADVDGAHI +LLLTFF+++M +L
Sbjct: 474 LSSQEIGTLITALGTSIGKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPEL 533

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           IE+ HL++  PPL+++T+G    Y  DE+  ++ L
Sbjct: 534 IERGHLYIAQPPLYKVTRGKSVQYLKDEKALEEYL 568



 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 4/88 (4%)

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           + +L+     G+  + + R+KGLGEM A QL ET +DAN R+LL+V++N       D   
Sbjct: 727 RALLDAIFAAGRKGLSMQRYKGLGEMNAEQLWETTLDANVRSLLQVKVNDAT----DADG 782

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
             ++LMG + + R  FIQE A  + ++ 
Sbjct: 783 LFSRLMGDEVEPRRDFIQENALSVANLD 810


>gi|307825353|ref|ZP_07655572.1| DNA gyrase, B subunit [Methylobacter tundripaludum SV96]
 gi|307733528|gb|EFO04386.1| DNA gyrase, B subunit [Methylobacter tundripaludum SV96]
          Length = 821

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 223/581 (38%), Positives = 347/581 (59%), Gaps = 19/581 (3%)

Query: 30  PDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDE 88
             S   A  +A+  YD+++I++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE
Sbjct: 11  TSSQTAAITTAAPEYDSTNIQVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDE 70

Query: 89  VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148
            +AGY   + V +  NG ++V D+GRGIPV+ H K    S  E+I+T LHAGGKFD++ Y
Sbjct: 71  ALAGYCKEVRVIIHSNGSVSVSDDGRGIPVDIH-KEEGVSAAEVIMTVLHAGGKFDDNAY 129

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS+EL++ V +   ++ Q++  G P++PL          GT I 
Sbjct: 130 KVSGGLHGVGVSVVNALSEELNLEVRKNGQLYKQQYRMGNPVAPLAAVGPAEG-SGTLIN 188

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F+P  + F D   F    L K  +  ++L+  V+     ++          ++ F F GG
Sbjct: 189 FKPSTETFTDV-EFHYDILAKRLRELSFLNSGVRISLEDERS-------DRQDVFEFEGG 240

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           +  ++    +N++ +  E+F    EK+G     VE A+ W +     +  Y N I   +G
Sbjct: 241 IGAFVVHLNKNKTPLFPEVFHFVAEKEGV---VVEIAMQWNDSYQENVFCYTNNIPQRDG 297

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           G+H +G R ALTR I +Y E +    K  +    DD       +LSV + +P+F+ QTK 
Sbjct: 298 GSHLAGFRGALTRTINQYIESSGLAKKEKVQTTGDDAREGLTAVLSVKVPDPKFSSQTKD 357

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444
           KLVS + +  VE+ + +    +L++ P  A  ++  ++E +  R   RK R+   RKT +
Sbjct: 358 KLVSSEIKPIVESTMNEKLQEFLLEKPQIAKAIVGKIVEAARAREAARKARDLTRRKTTL 417

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC +     +ELF+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  
Sbjct: 418 DIAGLPGKLADCQEKDPALSELFLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARF 477

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +K+ +++++  L+ ALGC           LRY ++IIMTDADVDG+HI +LLLTFFY+++
Sbjct: 478 DKMISSEEVGTLITALGCGIGKDEYNLAKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQL 537

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
            +++E+ ++++  PPL+++ +G +  Y  D+    + L + 
Sbjct: 538 PEIVEKGYIYIAQPPLYKVKKGKQEHYVKDDAQLNEYLIQL 578



 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++  E   K  K    I R+KGLGEM   QL ET +D+N R LL+V I   +       
Sbjct: 736 FKQAFEWMMKEIKKGQHIQRYKGLGEMNPEQLWETTLDSNNRRLLQVRIEDVI----AAD 791

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           +    LMG   + R  FI + A  + ++ 
Sbjct: 792 EIFTTLMGDVVEPRRDFIVKNALDVTNLD 820


>gi|83652312|gb|ABC36375.1| DNA gyrase, B subunit [Burkholderia thailandensis E264]
          Length = 867

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 235/614 (38%), Positives = 344/614 (56%), Gaps = 33/614 (5%)

Query: 16  SQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKAL 74
              ++ ++ +           N    ++Y ASSI+ILEGLE VR RPGMYIG T D   L
Sbjct: 30  KHPAATRVAQQNRKTPMTEQHNSQPENSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGL 89

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLE 131
           HHL  EV+DN++DE +AGY N I V++  +  ++V DNGRGIP +        P +S  E
Sbjct: 90  HHLVFEVLDNSIDEALAGYCNDIHVTIHADNSISVTDNGRGIPTDVKLNDKHEPKRSAAE 149

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP-- 189
           I++T LHAGGKFD ++Y++SGGLHGVG+S VNALS  L +TV R       +F RGI   
Sbjct: 150 IVMTELHAGGKFDQNSYKVSGGLHGVGVSCVNALSSWLRLTVRRDGKKHFMEFHRGIAQN 209

Query: 190 ----------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
                     +SP++      N RGT + F  D  IFG    +    L K  +  ++L+ 
Sbjct: 210 RVLEERDGEQVSPMQVIGDTEN-RGTEVHFMADSTIFGTV-EYHYDILAKRIRELSFLNN 267

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            V+   +  +   E         F F GG+K +++   + +S++   IF    EK G   
Sbjct: 268 GVRIRLTDQRSGKEDD-------FAFAGGVKGFVEYINKTKSVLHPTIFHINGEKDGV-- 318

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
             VE A+ W +     +  + N I   +GGTH +GLR A+TR I KY    +   K  + 
Sbjct: 319 -GVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVE 377

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
              DD+      +LSV + EP+F+ QTK KLVS + +  VE  +    + +L++ P +A 
Sbjct: 378 TSGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAK 437

Query: 417 KLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            +   ++E +  R   RK RE+ R+   +  + LPGKLADC +     +E++IVEGDSAG
Sbjct: 438 IICGKIVEAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAG 497

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLR 534
           GSAKQ R+R  QA+LPLRGK+LNV  A  +K+ +++QI+ LV ALGC         + LR
Sbjct: 498 GSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLR 557

Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDE 594
           Y ++IIMTDADVDGAHI +LLLTFFY++M ++IE+ ++++  PPL+++  G    Y  D+
Sbjct: 558 YHRIIIMTDADVDGAHIRTLLLTFFYRQMPEMIERGYVYIAQPPLYKVKAGRDERYLKDD 617

Query: 595 EHKQKILEEFKKHG 608
                 +      G
Sbjct: 618 TELNAHMLRLALQG 631



 Score =  130 bits (326), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 4/93 (4%)

Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652
           +    ++ ++      +  +   R+KGLGEM   QL ET MD   R LLRV+I   +   
Sbjct: 778 NVADFKEAMKWLMADAERNMSKQRYKGLGEMNPEQLWETTMDPAVRRLLRVQIEDAI--- 834

Query: 653 KDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
                    LMG + + R  FI+  A    ++ 
Sbjct: 835 -AADGIFTTLMGDEVEPRRAFIENNALRAGNID 866


>gi|93004837|ref|YP_579274.1| DNA gyrase, B subunit [Psychrobacter cryohalolentis K5]
 gi|92392515|gb|ABE73790.1| DNA gyrase subunit B [Psychrobacter cryohalolentis K5]
          Length = 871

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 225/607 (37%), Positives = 355/607 (58%), Gaps = 29/607 (4%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           M+D        LP   Q  +           + A A +    +Y +  IR+L GLE VR+
Sbjct: 1   MSDS-------LPTDHQQLTSDSAVET---IAAAVAPEVLPSDYSSKDIRVLRGLEAVRV 50

Query: 61  RPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119
           RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I++ +  +  ++V+DNGRG+PV+
Sbjct: 51  RPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQIDIIIHEDESVSVMDNGRGVPVD 110

Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179
            HP+    S  ++I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+   
Sbjct: 111 IHPE-EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYH 169

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
           + Q ++ G+P   +++ E   ++ GT+I F P   +F     F+   L K  +  ++L+ 
Sbjct: 170 YHQTYTDGVPDGDIQQMEAT-DQTGTQIRFYPSNDVFTGTI-FEYDILAKRLRELSFLNS 227

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            V+   + ++       I ++ EF   GGL  ++      +  I+        +  G   
Sbjct: 228 GVRIVLTDER-------IDKRHEFEHKGGLSEFVSYINAGKDGINDVFHFISNQDDGI-- 278

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
            +VE A+ W +    ++  + N I   +GGTH SG R ALTR +  Y +      K  ++
Sbjct: 279 -SVEVALQWTDTYNEKVFCFTNNIPQRDGGTHLSGFRSALTRCLNTYMDRENLFKKEKVA 337

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
              DD       I+SV + +P+F+ QTK KLVS + +  VE+A+ D F+ YL +NP    
Sbjct: 338 ATGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDYLQENPSAGK 397

Query: 417 KLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            +   +I+ +  R   RK      RKT +    LPGKLADC +     +EL+IVEGDSAG
Sbjct: 398 LIAGKIIDAARARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPALSELYIVEGDSAG 457

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLR 534
           GSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++Q++ +L+ ALGC     +Y  + +R
Sbjct: 458 GSAKQGRSRKTQAILPLKGKILNVERARFDKMLSSQEVGNLITALGCGIGPDEYNPDKVR 517

Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDE 594
           Y K+IIMTDADVDG+HI +LLLTFF+++  +LIE+ ++++  PPL+++ +G + +Y  D+
Sbjct: 518 YHKIIIMTDADVDGSHIRTLLLTFFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDD 577

Query: 595 EHKQKIL 601
           E  +  L
Sbjct: 578 EALKAYL 584



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 4/91 (4%)

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
                + ++     +  + I R+KGLGEM A QL +T MD   R +LRV I   +     
Sbjct: 784 RDFDYLWQQMMLDARRGLAIQRYKGLGEMNADQLWDTTMDPENRRMLRVNIEDAI----A 839

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
                  LMG   + R  FI+E A  + ++ 
Sbjct: 840 ADHMFTCLMGDHVEPRRIFIEENALTVSNLD 870


>gi|152998559|ref|YP_001364240.1| DNA gyrase subunit B [Shewanella baltica OS185]
 gi|160873130|ref|YP_001552446.1| DNA gyrase subunit B [Shewanella baltica OS195]
 gi|217971220|ref|YP_002355971.1| DNA gyrase subunit B [Shewanella baltica OS223]
 gi|151363177|gb|ABS06177.1| DNA gyrase, B subunit [Shewanella baltica OS185]
 gi|160858652|gb|ABX47186.1| DNA gyrase, B subunit [Shewanella baltica OS195]
 gi|217496355|gb|ACK44548.1| DNA gyrase, B subunit [Shewanella baltica OS223]
 gi|315265355|gb|ADT92208.1| DNA gyrase, B subunit [Shewanella baltica OS678]
          Length = 805

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 225/582 (38%), Positives = 347/582 (59%), Gaps = 18/582 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I 
Sbjct: 2   SENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDIT 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           +++  +G ++V D+GRGIPV  H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG
Sbjct: 62  ITIHVDGSVSVKDDGRGIPVSIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS +L +T+ R   ++ Q ++ G+P +P+++        GT I F P    F D
Sbjct: 121 VSVVNALSKKLQMTIRRAGKVYEQFYTHGVPDAPIKEIGDATK-TGTEIRFWPSEDTFSD 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      +++        + E F + GG+  ++     
Sbjct: 180 V-EFHFEILAKRVRELSFLNSGVGIRLVDERDN-------KNEFFKYEGGISAFVDYLNR 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++ ++F    E++     TVE A+ W +     I  + N I   +GGTH  G R A
Sbjct: 232 NKTPVNKDVFHFMQERED--GITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLVGFRSA 289

Query: 338 LTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K   S   DD       ++SV + +P+F+ QTK KLVS + +  
Sbjct: 290 LTRNLNSYMENEGYNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTA 349

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454
           VE  + +  + YL++NP +A  ++  +++ +  R   RK R    RK A+    LPGKLA
Sbjct: 350 VEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLA 409

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++ 
Sbjct: 410 DCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 469

Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            L+ ALGC   R +Y  +  RY  +IIMTDADVDG+HI +LLLTFF+++M +LIE+ +++
Sbjct: 470 TLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVY 529

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615
           +  PPLF++ +G +  Y  DE    + L      G       
Sbjct: 530 IAQPPLFKVKKGKQEQYLKDEPALTQYLTTQALDGTIVYPTQ 571



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           + L+      K  + I R+KGLGEM   QL ET MD   R +L+V I+  +         
Sbjct: 722 EALDWTISEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVG----ADQL 777

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
              LMG + + R +FI+  A  + ++ 
Sbjct: 778 FTCLMGDQVEPRREFIEANALNVANLD 804


>gi|253995377|ref|YP_003047441.1| DNA gyrase subunit B [Methylotenera mobilis JLW8]
 gi|253982056|gb|ACT46914.1| DNA gyrase, B subunit [Methylotenera mobilis JLW8]
          Length = 805

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 229/576 (39%), Positives = 342/576 (59%), Gaps = 21/576 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGY 93
             N + S +YD+SSI+ILEGL+ VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+
Sbjct: 2   SENNAISPDYDSSSIKILEGLDAVRKRPGMYIGDTSDGSGLHHMVFEVLDNAIDEALAGH 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
            + I+V +  +  ++V DNGRGIP +      K   +S  EI++T LHAGGKFD ++Y++
Sbjct: 62  CDDIKVIIHPDNSVSVSDNGRGIPTDIKQDDIKAVKRSAAEIVMTELHAGGKFDQNSYKV 121

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALSD L + + R   +   +F RG  ++PL +   V +K+GT + F 
Sbjct: 122 SGGLHGVGVSVVNALSDWLKLKIYRNGKVHQMEFRRGEAVAPLAETG-VTDKKGTEVHFL 180

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
              + F     +    L K  +  ++L+  VK      +         + E F + GG+K
Sbjct: 181 ASVETFVLV-EYHFEILAKRIRELSFLNNGVKIELIDQR-------NGKSENFAYSGGIK 232

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++    +++++  + F    EK G    T+E A+ W +     +  + N I   +GGT
Sbjct: 233 GFVEYMNRSKTVLHPKTFYASGEKDG---MTIEVAMQWNDSYSETVQCFTNNIPQRDGGT 289

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +GLR A+TR + +Y E ++   K  +    DD+      +LSV + +P+F+ QTK KL
Sbjct: 290 HLTGLRTAMTRTLNQYIEQSELAKKAKVETTGDDMREGITCVLSVKVPDPKFSSQTKDKL 349

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRK 446
           VS + Q  V   +      +L +NP +A  +   V+E +  R   RK RE+ R+   +  
Sbjct: 350 VSSEVQPVVSEIVAAKLAEFLQENPADAKIICGKVVEAARAREAARKAREITRRKGVMDT 409

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
           + LPGKLADC +      E+++VEGDSAGGSAKQ R+R NQA+LPL+GKILNV  A  +K
Sbjct: 410 MGLPGKLADCQEKDPALCEIYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDK 469

Query: 507 IRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           + ++Q+I  L+ ALG          E LRY ++IIMTDADVDGAHI +LLLTFFY++M +
Sbjct: 470 LLSSQEIATLITALGTSIGKADFSAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMTE 529

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           L+E+ H+++  PPL+++ QG    Y  DE+     L
Sbjct: 530 LVERGHIYIAQPPLYKVKQGRDERYLKDEQELDIYL 565



 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +  K          ++ L+  +   K  + I R+KGLGEM   QL ET MD   R LL
Sbjct: 708 VKRNDKEQ---TISTFKQALDWLQGEAKNTLNIQRYKGLGEMNPEQLWETTMDPTVRRLL 764

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V+I+  +       +    LMG   + R  FI+  A  + ++ 
Sbjct: 765 KVQIDDAI----AADEIFTTLMGDNVEPRRAFIESNALGVGNLD 804


>gi|52840260|ref|YP_094059.1| DNA gyrase subunit B [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|52627371|gb|AAU26112.1| DNA gyrase subunit B [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 806

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 230/576 (39%), Positives = 357/576 (61%), Gaps = 19/576 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S   +YD+++I++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGY   I
Sbjct: 3   SVDASYDSNNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDESLAGYCKEI 62

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V++  +  +TV D+GRGIPV+ H K   KS  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 63  FVTIHSDESITVKDDGRGIPVDIH-KEEGKSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 121

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+ELH+ V R   ++ Q +  G+P SP+ +  +  N  GT+I F+P  + F 
Sbjct: 122 GVSVVNALSEELHLLVRRHGKVYEQHYRHGVPESPIAETGEA-NSTGTQIWFKPSAETFS 180

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  +YL+  V      ++         +K+ F++ GG+K +++   
Sbjct: 181 NI-EFHYDILAKRLRELSYLNSGVCIHLFDER-------TQKKDTFHYEGGIKAFVEHLN 232

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           +N++ +   +F+  +EK G     +E A+ W +     I  + N I   +GGTH +G R 
Sbjct: 233 KNKTPVHPVVFSMTSEKDGI---VIELAMQWNDGYQETIFCFTNNIPQRDGGTHMAGFRA 289

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  +S   DD       +LSV + +P+F+ QTK KLVS + + 
Sbjct: 290 ALTRTLNNYIENEGYAKKAKVSPTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKP 349

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE+ + + F+ +L++NP  A  ++  +I+ +  R   R+ R    RK A+    LPGKL
Sbjct: 350 AVESCVAEKFNDFLLENPTAAKSIVAKIIDAARAREAARRAREMTRRKGALDIAGLPGKL 409

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL++VEGDSAGGSAKQAR+R  QA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 410 ADCQEKDPSLSELYLVEGDSAGGSAKQARDRKFQAILPLKGKILNVEKARFDKMLSSQEV 469

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC     +Y  + +RY ++IIMTDADVDG+HI +LLLTFFY++  +L+E+ ++
Sbjct: 470 ATLITALGCGIGPEEYDPDKVRYHRIIIMTDADVDGSHIRTLLLTFFYRQTRELLERGYI 529

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++  PPL+++ +G +  Y  D+E     L +    G
Sbjct: 530 YIAQPPLYKVKRGKQEQYVKDDEALFDYLTQCALDG 565



 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G KS+     E+ +++L       K    I R+KGLGEM   QL ET MD   R +L
Sbjct: 709 IQRGDKSL---PVENFEQVLNWLMDEAKKGQTIQRYKGLGEMNPEQLWETTMDPEVRRML 765

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +       +    LMG   + R  FI+  A   +++ 
Sbjct: 766 QVSIEDAV----AADEIFTTLMGDNVEPRRDFIETNALDAENID 805


>gi|120552949|ref|YP_957300.1| DNA gyrase subunit B [Marinobacter aquaeolei VT8]
 gi|120322798|gb|ABM17113.1| DNA gyrase subunit B [Marinobacter aquaeolei VT8]
          Length = 804

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 229/575 (39%), Positives = 346/575 (60%), Gaps = 19/575 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  NY++SSI++L+GL+ VR RPGMYIG TD+   LHH+  E++DN++DE +AGY + I 
Sbjct: 2   SESNYNSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFELVDNSIDEALAGYCSEIG 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           + +  +  +TV DNGRGIPV+ H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG
Sbjct: 62  IIIHPDESITVKDNGRGIPVDLHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS  L +T+ R   ++ Q ++ G+P +PL +  +  +  GT++ F P P+ F  
Sbjct: 121 VSVVNALSSSLTLTIRRDGKVYEQSYTHGVPNAPLGEVGET-DASGTKVHFIPSPETFT- 178

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  A+L+  V+   + ++   E       E F + GGL+ +++    
Sbjct: 179 HIQFHYDILAKRLRELAFLNSGVRIRLTDERSGKE-------EIFEYEGGLRAFVEHLNT 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ I+      +  + G     VE A+ W +     I  + N I   +GGTH +G R A
Sbjct: 232 NKTAINRVFHFNREREDGI---AVEVAMQWNDAFQENIYCFTNNIPQRDGGTHLAGFRAA 288

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y +      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 289 LTRSLNNYIDHEGLGKKAKVATSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 348

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  L   F  YL + P EA +++  +IE +  R   RK      RK A+    LPGKLA
Sbjct: 349 VEQELYQSFAEYLQEQPNEAKQIVNKMIEAARAREAARKARDMTRRKGALDIAGLPGKLA 408

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +ELFIVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 409 DCQEKDPALSELFIVEGDSAGGSAKQGRDRKTQAILPLKGKILNVEKARFDKMLSSAEVG 468

Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            L+ ALGC   R ++  + LRY  +IIMTDADVDG+HI +LLLTF +++M ++IE+ H+F
Sbjct: 469 TLITALGCGIGREEFNPDKLRYHSIIIMTDADVDGSHIRTLLLTFLFRQMREIIERGHVF 528

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +  PPL+++ +G +  Y  DE+ K+  L +    G
Sbjct: 529 IAMPPLYKVKRGKQEQYLKDEKAKEAYLTQSALEG 563



 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G +          +  LE   K  +  + I R+KGLGEM   QL ET MD   R ++
Sbjct: 707 IQRGERKQSVLS---FEGALEWLMKEAQRGLNIQRYKGLGEMNPDQLWETTMDPETRRMM 763

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG   + R  FIQ  A  + ++ 
Sbjct: 764 KVTIEDAI----AADQIFTTLMGDDVEPRRDFIQSNALEVTNLD 803


>gi|304412708|ref|ZP_07394311.1| DNA gyrase, B subunit [Shewanella baltica OS183]
 gi|307305827|ref|ZP_07585573.1| DNA gyrase, B subunit [Shewanella baltica BA175]
 gi|304348918|gb|EFM13333.1| DNA gyrase, B subunit [Shewanella baltica OS183]
 gi|306911320|gb|EFN41746.1| DNA gyrase, B subunit [Shewanella baltica BA175]
          Length = 805

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 225/582 (38%), Positives = 347/582 (59%), Gaps = 18/582 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I 
Sbjct: 2   SENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDIT 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           +++  +G ++V D+GRGIPV  H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG
Sbjct: 62  ITIHVDGSVSVKDDGRGIPVSIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS +L +T+ R   ++ Q ++ G+P +P+++        GT I F P    F D
Sbjct: 121 VSVVNALSKKLQMTIRRAGKVYEQFYTHGVPDAPIKEIGDATK-TGTEIRFWPSEDTFSD 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      +++        + E F + GG+  ++     
Sbjct: 180 V-EFHFEILAKRVRELSFLNSGVGIRLVDERDN-------KNEFFKYEGGISAFVDYLNR 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++ ++F    E++     TVE A+ W +     I  + N I   +GGTH  G R A
Sbjct: 232 NKTPVNKDVFHFMQERED--GITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLVGFRSA 289

Query: 338 LTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K   S   DD       ++SV + +P+F+ QTK KLVS + +  
Sbjct: 290 LTRNLNSYMENEGYNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTA 349

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454
           VE  + +  + YL++NP +A  ++  +++ +  R   RK R    RK A+    LPGKLA
Sbjct: 350 VEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLA 409

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++ 
Sbjct: 410 DCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 469

Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            L+ ALGC   R +Y  +  RY  +IIMTDADVDG+HI +LLLTFF+++M +LIE+ +++
Sbjct: 470 TLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVY 529

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615
           +  PPLF++ +G +  Y  DE    + L      G       
Sbjct: 530 IAQPPLFKVKKGKQEQYLKDEPALTQYLTTQALDGTIVYPTQ 571



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           + L+      K  + I R+KGLGEM   QL ET MD   R +L+V I+  +         
Sbjct: 722 EALDWTISEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVG----ADQL 777

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
              LMG + + R +FI+  A  + ++ 
Sbjct: 778 FTCLMGDQVEPRREFIEANALNVANLD 804


>gi|326793326|ref|YP_004311146.1| DNA gyrase B subunit [Marinomonas mediterranea MMB-1]
 gi|326544090|gb|ADZ89310.1| DNA gyrase, B subunit [Marinomonas mediterranea MMB-1]
          Length = 807

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 223/575 (38%), Positives = 342/575 (59%), Gaps = 16/575 (2%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
           + +NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I 
Sbjct: 2   SENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDTIT 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +  ++V DNGRGIPV+ H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG
Sbjct: 62  VTIHPDESVSVSDNGRGIPVDMHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+ L +T+ +   I+ Q +  G+P +PL       +  GT + F+P    F +
Sbjct: 121 VSVVNALSESLTLTIRKDGKIYEQNYVHGVPQAPLAIIGDT-DGAGTSVHFKPSADTFSN 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+++++    
Sbjct: 180 IL-FIYDILAKRLRELSFLNSGVAIHLKDERSGKE-------EFFNYEGGLRSFVEHLNT 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ I+                 VE A+ W E     I  Y N I   +GGTH +G R A
Sbjct: 232 NKTPINDIFHFICQRDDLEDGIAVEVALQWNEGFQENIYCYTNNIPQRDGGTHLAGFRGA 291

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  + E      K+ ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 292 LTRTLNNFIESEGLAKKQKVATTGDDSREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKTA 351

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  +   F  YL++ P EA  ++  +I+ +  R   R+      RK A+    LPGKLA
Sbjct: 352 VEQEMAKRFAEYLLEKPNEAKIIVNKMIDAARAREAARRARDMTRRKGALDIAGLPGKLA 411

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +E+++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 412 DCQEKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 471

Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            L+ ALGC   R ++  + LRY  ++IMTDADVDG+HI +LLLTFF+++M ++IE+ H+F
Sbjct: 472 TLITALGCGIGRDEFNPDKLRYHSIVIMTDADVDGSHIRTLLLTFFFRQMPEIIERGHIF 531

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +  PPL+++T+    +Y  DE   ++ L E    G
Sbjct: 532 IAQPPLYKVTRRKNELYIKDEHALEQHLIEVALDG 566



 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G ++    D +  +  L    K  K  +++ R+KGLGEM   QL ET MD + R +L
Sbjct: 710 IQRGERTQIVTDIDVMKTWL---MKEAKRGMDVQRYKGLGEMNPDQLWETTMDPDSRRML 766

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           RV I+  +            LMG + + R  FIQ+ A  + ++ 
Sbjct: 767 RVTIDDAV----AADQMFTTLMGDEVEPRRNFIQDNALSVANLD 806


>gi|146328853|ref|YP_001209522.1| DNA gyrase, B subunit [Dichelobacter nodosus VCS1703A]
 gi|146232323|gb|ABQ13301.1| DNA gyrase, B subunit [Dichelobacter nodosus VCS1703A]
          Length = 800

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 233/566 (41%), Positives = 338/566 (59%), Gaps = 19/566 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            +YD+S IR+L+GLE VR+RPGMYIG TD+   LHH+  EV+DNA+DE +AGY   I V 
Sbjct: 2   SSYDSSRIRVLKGLEAVRIRPGMYIGNTDDGSGLHHMVFEVVDNAIDEALAGYCTEINVI 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  N  +TV DNGRGIPV+ H K   +S  E+I+T LHAGGKFD S+Y++SGGLHGVG+S
Sbjct: 62  IHQNESITVRDNGRGIPVDIH-KEEGRSAAEVIMTILHAGGKFDASSYKVSGGLHGVGVS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS++L +T+ R   I  Q++  G P +PL          GT I F    + F +  
Sbjct: 121 VVNALSEKLELTIRRDGHIHYQQYRHGEPQAPLAIIGDTEE-TGTEIRFLASRETFHNV- 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   L K  Q  ++L+  V+   + +++        + E F + GG+  + +    N+
Sbjct: 179 EFDYDTLAKRLQELSFLNSGVRIVLTDERK-------DKTEVFQYEGGIIAFTRYLNRNK 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + I   IF    EK  +    VE ++ W +     +  + N I   +GGTH +G R A+T
Sbjct: 232 TPIHDTIFHCAIEKDASI---VEISLQWNDSYQENVYYFTNNIPQRDGGTHMAGFRSAMT 288

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  Y E      K  IS   DD       ++S+ I +P+F+ QTK KLVS + +  VE
Sbjct: 289 RTLNNYMEAEGIAKKAKISTSGDDAREGLTAVVSIKIPDPKFSSQTKDKLVSSEVKGLVE 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADC 456
             L +    +L ++P EA  ++  +++ +  R   RK R    RK A+    LPGKLADC
Sbjct: 349 GVLSEKLQEFLYEHPNEAKIIVNKIVDAARAREAARKAREMTRRKDALDITGLPGKLADC 408

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            +     +ELF+VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+  + +I  L
Sbjct: 409 QEKDPALSELFLVEGDSAGGSAKQGRNRKFQAILPLKGKILNVEKARFDKMLASAEIATL 468

Query: 517 VQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           + ALG    +  +  + LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ H+++ 
Sbjct: 469 ITALGTGIGKEDFDPDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGHIYIA 528

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKIL 601
            PPL+++ +G +S Y  D+    ++L
Sbjct: 529 QPPLYKVKKGKQSQYLKDDHELNELL 554



 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 10/98 (10%)

Query: 588 SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINK 647
             Y  D      +++     GK   EI R+KGLGEM   QL ET +D + R +L+V++  
Sbjct: 712 VHYFSD------VMQALFAEGKKSYEIQRYKGLGEMNPEQLWETTLDPSVRRMLQVKVQD 765

Query: 648 DLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            ++      +    LMG + + R  FI+E A    ++ 
Sbjct: 766 AMH----ADEVFTTLMGEEVEPRRAFIEENAIRAGNID 799


>gi|91791373|ref|YP_561024.1| DNA gyrase, B subunit [Shewanella denitrificans OS217]
 gi|91713375|gb|ABE53301.1| DNA gyrase subunit B [Shewanella denitrificans OS217]
          Length = 805

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 226/582 (38%), Positives = 347/582 (59%), Gaps = 18/582 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I 
Sbjct: 2   SENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDIT 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           +++  +G ++V D+GRGIPV  H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG
Sbjct: 62  ITIHTDGSVSVQDDGRGIPVAIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS +L +T+ R   I+ Q ++ G+P +P+          GT I F P  + F +
Sbjct: 121 VSVVNALSHKLQLTIRRGGKIYEQFYTMGVPDAPIAAIGDAIK-TGTEIRFWPSGETFTN 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      +++        + E F + GG+  ++     
Sbjct: 180 L-EFHFDILAKRVRELSFLNSGVGIRLIDERDN-------KNEFFKYEGGISAFVTYLNR 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++ ++F    E++     TVE A+ W +     I  + N I   +GGTH +G R A
Sbjct: 232 NKTPVNKDVFHFAHERED--GITVEVAMQWNDGYQENIYCFTNNIPQRDGGTHLAGFRGA 289

Query: 338 LTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K   S   DD       ++SV + +P+F+ QTK KLVS + +  
Sbjct: 290 LTRNLNTYMEREGFNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSA 349

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454
           VE  + +  + YL++NP +A  ++  +++ +  R   RK R    RK A+    LPGKLA
Sbjct: 350 VEQTMGEQLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLA 409

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++ 
Sbjct: 410 DCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 469

Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            L+ ALGC   R +Y  E  RY  +IIMTDADVDG+HI +LLLTFF+++M +LIE+ +++
Sbjct: 470 TLITALGCGIGRDEYDPEKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIY 529

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615
           +  PPLF++ +G +  Y  DE    + L      G       
Sbjct: 530 IAQPPLFKVKKGKQEQYLKDEPALTEYLTTQALDGTRIYPTQ 571



 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K       E   + L+      K  + I R+KGLGEM   QL ET MD   R +L
Sbjct: 708 VQRGEKVKEV---ETFLEALDWMISEAKRGLYIQRYKGLGEMNPEQLWETTMDPETRRML 764

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           RV I   +            LMG + + R +FI+  A  + ++ 
Sbjct: 765 RVTIEDAVG----ADQLFTTLMGDQVEPRREFIEANALNVANLD 804


>gi|28493461|ref|NP_787622.1| DNA topoisomerase IV subunit B [Tropheryma whipplei str. Twist]
 gi|28476502|gb|AAO44591.1| DNA gyrase subunit B-like protein [Tropheryma whipplei str. Twist]
          Length = 662

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 234/674 (34%), Positives = 336/674 (49%), Gaps = 39/674 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           S++ +Y+A  I +LEGL  VR RPGMYIG TD   L H   E+IDN++DEV+AG+ N++ 
Sbjct: 2   SSNTDYNADDIALLEGLAAVRKRPGMYIGSTDNHGLAHCLWEIIDNSVDEVLAGFGNVVN 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           ++L G+   +V D GRGIPV+   K    + +E++ T LHAGGKF    Y  SGGLHGVG
Sbjct: 62  ITLHGDNSFSVQDFGRGIPVDIESK-TGLTGVELVFTKLHAGGKFGTGAYFTSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS++L V V R    +  +F   +      K +   N  GTR+ F PDP IFG 
Sbjct: 121 ASVVNALSEKLSVEVDRDGMTWVMEFRNQVTSGLRSKCKIASNVTGTRVRFWPDPLIFGS 180

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
            A      L +     A+L   ++          E   + +   + F GG K +++    
Sbjct: 181 -AEICIESLHQRAMQTAFLVPGLRV-------NIEDRVLGKSSSYLFEGGCKQFVEHLSA 232

Query: 279 NRSLISSEIFTGKTE----------------KKGTHRGTVEWAIAWCEENPEIT-SYCNT 321
              +       GK                          V+ A+AW  +      S+ N 
Sbjct: 233 GELITDVLCIRGKGSFSEAVPVLKETGNLVISSVERVCDVDIALAWRNDFETHINSFVNV 292

Query: 322 ILTDEGGTHESGLRVALTRGI-KKYAELTQNKRAISIISDDL--MISAVGILSVFIREPE 378
           I T +GGTH SG   AL + I    +  ++  ++ +   +          ++SV + EP+
Sbjct: 293 IETPKGGTHYSGFEQALLKTIRNAVSSQSRYLKSGNNRPEREDVFSGLTAVVSVKLPEPQ 352

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLV--QNPIEATKLLEWVIERSEERLRRRKQR 436
           F GQTK  L +   +  V N + D         +   +  ++LE V+ +   RL  R  R
Sbjct: 353 FEGQTKEVLGTPAVKGIVANIVADNLQKLFEDPKYKTQIRRVLEKVVAQMHFRLAARASR 412

Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E   RK A+    LP KL DC  N  + +ELFIVEGDSA G+A++ARN   QA+LP+RGK
Sbjct: 413 ETQRRKNALETSSLPAKLVDCRSNDVNESELFIVEGDSALGTARRARNSEYQALLPIRGK 472

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLL 555
           ILNV  A       N +   ++Q +G  + S +     RY KVIIM+DADVDGAHI  LL
Sbjct: 473 ILNVQKASVADALANAECASIIQVIGAGSGSNFDIAQARYGKVIIMSDADVDGAHIRILL 532

Query: 556 LTFFYQEMYDLIEQKHLFLISPPL--FRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKI 612
           LT F++ M  +I    +F   PPL    +    + +Y   +   + +L   K+ G + + 
Sbjct: 533 LTLFFRYMQPMISSGRVFSALPPLHQVVVKNSNEKIYTRSDRELEMVLSRLKQEGLEHRE 592

Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
            I R+KGLGEM A QL ET MD +KRTLLR+ ++      +   D    LMG     R +
Sbjct: 593 PIQRYKGLGEMDADQLAETTMDRSKRTLLRIRMSD----AQQASDIFALLMGNDVAPRRE 648

Query: 673 FIQERASFIDDVGT 686
           FI       D + +
Sbjct: 649 FIANSVVSTDRIDS 662


>gi|83591344|ref|YP_425096.1| DNA gyrase subunit B [Rhodospirillum rubrum ATCC 11170]
 gi|83574258|gb|ABC20809.1| DNA gyrase subunit B [Rhodospirillum rubrum ATCC 11170]
          Length = 802

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 228/566 (40%), Positives = 340/566 (60%), Gaps = 16/566 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVS 100
             Y + SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY +  EV 
Sbjct: 4   QAYTSESIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYCDHSEVI 63

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L+G+G +TV DNGRGIPV+ H +    S  E+I+T LHAGGKFD ++Y++SGGLHGVG+S
Sbjct: 64  LNGDGSVTVCDNGRGIPVDIHRE-EGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVS 122

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALSD L + + R       +F  G  ++PL+      ++ GT ITF   P IF    
Sbjct: 123 VVNALSDWLDLRIWRDGKEHYVRFEHGEVVAPLKVVGDCGDRTGTEITFLASPAIFA-IT 181

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +D A L    +  A+L+  V+   +  +        P   +F++ GG++ +++   +++
Sbjct: 182 TYDYATLEHRLRELAFLNSGVRLLLTDKR-----GTEPRTTKFHYDGGIEEFVRYLDKSK 236

Query: 281 SLISSEIFTGKTEKKG-THRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
           +++ S   T   E+ G     ++EW  ++ E    +  + N I   +GGTH +G R  LT
Sbjct: 237 TVLHSPPVTAIGERDGMIVELSLEWTDSYHET---VLCFTNNIPQRDGGTHMAGFRGGLT 293

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  YA+ +    K  +++  DD+      +LSV + +P+F+ QTK KLVS + +  VE
Sbjct: 294 RTLNSYAQDSGLMKKEKVTLTGDDMREGLTCVLSVKVPDPKFSSQTKEKLVSSEVRPVVE 353

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
             + +    +L ++P EA K++  V+E +  R   R+ RE   RK A+    LPGKLADC
Sbjct: 354 AVVVERLGQWLEEHPQEARKIIGKVVEAAAAREAARRARELTRRKGALDMASLPGKLADC 413

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
                  +ELFIVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +K+ ++ +I  L
Sbjct: 414 QNRDPAQSELFIVEGDSAGGSAKQGRDRGYQAILPLRGKILNVERARFDKMLSSAEIGTL 473

Query: 517 VQALGCRTRSQYREE-DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           + ALG        +    RY K+IIMTDADVDG+HI +LLLTFF+++M +++E+ +L++ 
Sbjct: 474 IAALGTGIGKDDFDVGKARYHKIIIMTDADVDGSHIRTLLLTFFFRQMPEVVEKGYLYIA 533

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKIL 601
            PPL+R  +G    Y  D+   +  L
Sbjct: 534 QPPLYRAKRGNSEQYLKDDRELEDYL 559



 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            ++      G+  I I R+KGLGEM   QL ET +D N R LL+V++N+    + D +D 
Sbjct: 719 TLINAVMAAGRKGIAIQRYKGLGEMNPEQLWETTLDPNVRRLLQVKVNQ----VSDAEDV 774

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            + LMG   + R  FIQ+ A  + ++ 
Sbjct: 775 FSTLMGDIVEPRRDFIQDNALNVQNLD 801


>gi|119383170|ref|YP_914226.1| DNA gyrase subunit B [Paracoccus denitrificans PD1222]
 gi|119372937|gb|ABL68530.1| DNA gyrase subunit B [Paracoccus denitrificans PD1222]
          Length = 812

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 231/586 (39%), Positives = 333/586 (56%), Gaps = 21/586 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
                 + +Y A SI++L+GLE VR RPGMYIG TD+   LHH+ +EV+DN +DE +AG+
Sbjct: 2   TEPAPQTSDYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVTEVVDNGIDEALAGH 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ + V +  +G ++V DNGRGIPV+ HP     S  E+I+T LHAGGKFD ++Y++SGG
Sbjct: 62  ADFVRVKIHADGSVSVRDNGRGIPVDMHP-TEGVSAAEVIMTQLHAGGKFDQNSYKVSGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPD 212
           LHGVG+SVVNALSD L + + R       +F  G  +  L         ++GT + F   
Sbjct: 121 LHGVGVSVVNALSDWLELRIWRGGKEHYARFENGDTVEHLRVVGDAEPGEKGTEVRFLAS 180

Query: 213 -----PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
                P        +    L    +  A+L+  V+     ++        P + E Y+ G
Sbjct: 181 SKEDRPDGTFLNREYSYKVLENRLRELAFLNSGVRIILEDER-----PAEPLRTELYYEG 235

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G++ +++    +++ +  E      E+ G     +E A+ W +     +  + N I   +
Sbjct: 236 GVREFVKFIDRSKTPVMPEPIFITGERNGI---GIEVAMWWNDSYHETVLPFTNNIPQRD 292

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R ALTR I  YA+ +    K  +    DD       +LSV + +P+F+ QTK
Sbjct: 293 GGTHLAGFRGALTRVINNYAQSSGAARKEKVDFTGDDAREGLTCVLSVKVPDPKFSSQTK 352

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
            KLVS + +  VE  + +    +  +NP EA  +L  +IE +  R   RK RE   RKTA
Sbjct: 353 DKLVSSEVRPAVEGLIGEKLAEWFEENPAEAKSILGKIIEAALAREAARKARELTRRKTA 412

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +     +ELFIVEGDSAGGSAKQ R+R NQAVLPLRGKILNV  A 
Sbjct: 413 MDVASLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRSRQNQAVLPLRGKILNVERAR 472

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
            +++ ++ QI  L+ ALG          + LRY K++IMTDADVDGAHI +LLLTFF+++
Sbjct: 473 FDRMLSSDQIGTLITALGTGIGRDEFNLDKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQ 532

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           M +LIE  HL++  PPL+++++G   VY  DE   +  L E    G
Sbjct: 533 MPELIEAGHLYIAQPPLYKVSRGRSEVYLKDEAALEDYLIEQGVDG 578



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L+     G+  + + R+KGLGEM   QL ET +D   RT+L+V +      L +  D 
Sbjct: 729 SLLQAIFLEGEKGLSLQRYKGLGEMNPEQLWETTLDPAARTMLQVRVED----LGEADDI 784

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R  FIQ+ A  ++++ 
Sbjct: 785 FTKLMGDVVEPRRDFIQQNALSVENLD 811


>gi|294338943|emb|CAZ87287.1| DNA topoisomerase 4 subunit B (Topoisomerase IV subunit B)
           [Thiomonas sp. 3As]
          Length = 652

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 252/662 (38%), Positives = 356/662 (53%), Gaps = 44/662 (6%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y  SSIR+L+GLEPVR RPGMY   T      H+  EVIDN+ DE + GY   I V+L  
Sbjct: 9   YSESSIRVLKGLEPVRQRPGMY---TRTDNPLHIVQEVIDNSADEALGGYCQHIAVTLHT 65

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLHGVGIS 160
           +G ++V D+GRGIP   HP+  N   +E++ T LHAGGKFD      Y  SGGLHGVG+S
Sbjct: 66  DGSISVEDDGRGIPFGLHPE-ENAPVVELVFTRLHAGGKFDKLQGGAYSFSGGLHGVGVS 124

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR--GTRITFRPDPKIFGD 218
           V NAL+  L VTV R   +    FS G  + PL  ++  R++R  GTR+   PD K F  
Sbjct: 125 VTNALAARLEVTVWRDGQVAHLVFSGGDVIEPLAVRKAARDERRSGTRVRVWPDAKYFDS 184

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
                 A L  + +SKA L   VK     +K         +   + +  GL+ YL + L 
Sbjct: 185 PH-LPLAELTHLLRSKAVLLPGVKVDLIQEK-------TGDTTHWEYARGLRDYLLSSLP 236

Query: 279 NRSLIS---SEIFTGKTEKKGTHRGT-VEWAIAWCEENPE-ITSYCNTILTDEGGTHESG 333
               I     E +   +E++    G    W +A+ EE      SY N I T  GGTHE+G
Sbjct: 237 AEPYIDLFEGEHYASASEQESFAEGEGAAWCVAFTEEGAVLRESYVNLIPTPAGGTHEAG 296

Query: 334 LRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           LR  L + +K + EL     + + ++ +DL   A  +LS  + +P+F GQ K KL S DA
Sbjct: 297 LREGLFQAVKGFIELHNLQPKGVKLLPEDLFARASFVLSARVLDPQFQGQIKEKLNSRDA 356

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
            R V  A+R   + +L +   +  KL E VI +++ RLR  ++ E  + + +  L  PGK
Sbjct: 357 LRLVGQAVRPTLELWLHERVDQGKKLAELVIRQAQSRLRAAQKVEKKKGSGVAVL--PGK 414

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L DC       TELF+VEGDSAGGSAK  R++  QAVLPLRGK+LN      +++  N +
Sbjct: 415 LTDCESRDTERTELFLVEGDSAGGSAKMGRDKEFQAVLPLRGKVLNSWEIERDRLFANTE 474

Query: 513 IMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           I D+  A+G     +    D   LRY K+ I++DADVDG+HI  LLLT F++    LIE+
Sbjct: 475 IHDIAVAIGVDPHGKDDMPDLSNLRYGKICILSDADVDGSHIQVLLLTLFFRHFPKLIER 534

Query: 570 KHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKIEISRFKGLG 621
            H+ +  PPL+R+    +G K    +Y  D+   Q   ++ +K G   G  +ISRFKGLG
Sbjct: 535 GHVCVARPPLYRLDAPARGKKPAQKIYVLDDAELQAAQDKLRKDGLKDGAWQISRFKGLG 594

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQERASF 680
           EM A QL +T ++ + R L RV  +         +   ++LMG  +A  R   ++E    
Sbjct: 595 EMSAEQLWDTTLNPDTRRLYRVRPDD-------AEALFHQLMGKGEAQARRGLMEEYGDQ 647

Query: 681 ID 682
           I+
Sbjct: 648 IE 649


>gi|126172261|ref|YP_001048410.1| DNA gyrase subunit B [Shewanella baltica OS155]
 gi|125995466|gb|ABN59541.1| DNA gyrase subunit B [Shewanella baltica OS155]
          Length = 805

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 225/582 (38%), Positives = 347/582 (59%), Gaps = 18/582 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I 
Sbjct: 2   SENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDIT 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           +++  +G ++V D+GRGIPV  H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG
Sbjct: 62  ITIHVDGSVSVKDDGRGIPVSIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS +L +T+ R   ++ Q ++ G+P +P+++        GT I F P    F D
Sbjct: 121 VSVVNALSKKLQMTIRRAGKVYEQFYTHGVPDAPIKEIGDATK-TGTEIRFWPSEDTFSD 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      +++        + E F + GG+  ++     
Sbjct: 180 V-EFHFEILAKRVRELSFLNSGVGIRLIDERDN-------KNEFFKYEGGISAFVDYLNR 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++ ++F    E++     TVE A+ W +     I  + N I   +GGTH  G R A
Sbjct: 232 NKTPVNKDVFHFMQERED--GITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLVGFRSA 289

Query: 338 LTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K   S   DD       ++SV + +P+F+ QTK KLVS + +  
Sbjct: 290 LTRNLNSYMENEGYNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTA 349

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454
           VE  + +  + YL++NP +A  ++  +++ +  R   RK R    RK A+    LPGKLA
Sbjct: 350 VEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLA 409

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++ 
Sbjct: 410 DCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 469

Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            L+ ALGC   R +Y  +  RY  +IIMTDADVDG+HI +LLLTFF+++M +LIE+ +++
Sbjct: 470 TLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVY 529

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615
           +  PPLF++ +G +  Y  DE    + L      G       
Sbjct: 530 IAQPPLFKVKKGKQEQYLKDEPALTQYLTTQALDGTIVYPTQ 571



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           + L+      K  + I R+KGLGEM   QL ET MD   R +L+V I+  +         
Sbjct: 722 EALDWTISEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVG----ADQL 777

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
              LMG + + R +FI+  A  + ++ 
Sbjct: 778 FTCLMGDQVEPRREFIEANALNVANLD 804


>gi|229587582|ref|YP_002869701.1| DNA gyrase subunit B [Pseudomonas fluorescens SBW25]
 gi|229359448|emb|CAY46289.1| DNA gyrase subunit B [Pseudomonas fluorescens SBW25]
          Length = 805

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 225/569 (39%), Positives = 343/569 (60%), Gaps = 19/569 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S  + YD++SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I
Sbjct: 2   SEENTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            + +  +  +TV DNGRGIPV+ H K    S  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  SIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+EL +TV R   I+ Q +  G+P  P++         GT+I F+P  + F 
Sbjct: 121 GVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGD-SESTGTQIHFKPSAETFK 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++   
Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G R 
Sbjct: 232 TNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 289 ALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPGKL
Sbjct: 349 AVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 468

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++
Sbjct: 469 GTLITALGCGIGRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++  PPL+++ +G +  Y  D++  ++ +
Sbjct: 529 YIAQPPLYKVKKGKQEQYIKDDDAMEEYM 557



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
           +  ++ L+        +  I R+KGLGEM   QL ET MD  +R +LRV I   +     
Sbjct: 718 KEFKEALDWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPAQRRMLRVTIEDAIG---- 773

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
                N LMG   + R  FI+  A  + ++ 
Sbjct: 774 ADQIFNTLMGDAVEPRRDFIESNALAVSNLD 804


>gi|302035397|ref|YP_003795719.1| DNA gyrase subunit B [Candidatus Nitrospira defluvii]
 gi|300603461|emb|CBK39791.1| DNA gyrase, subunit B [Candidatus Nitrospira defluvii]
          Length = 824

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 230/593 (38%), Positives = 339/593 (57%), Gaps = 29/593 (4%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86
               D    + +  SD+Y A  I++LEGL+ VR RP MYIG T    LHHL  EV+DN++
Sbjct: 1   MAKDDQQDNSAKPKSDSYSADQIKVLEGLDAVRKRPAMYIGSTGVDGLHHLVYEVVDNSV 60

Query: 87  DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146
           DE +AG+   IEV++  +G +TVVDNGRGIP   H     KS  E+ LT LHAGGKF+  
Sbjct: 61  DEHMAGFGEAIEVTIHIDGSVTVVDNGRGIPTGMHS-TQKKSAAEVALTVLHAGGKFEQG 119

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
            Y +SGGLHGVGISVVNALS+ L + + +   +F Q++ RG P +PL    K +  RGT+
Sbjct: 120 AYTVSGGLHGVGISVVNALSEWLELEIWQDGQVFEQRYERGKPQAPLAVTGKTKR-RGTK 178

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F+PD +IF     F    L +  +  A+L+  +      D++  E       + F++ 
Sbjct: 179 VRFKPDGQIFET-LEFSFDVLAQRLRELAFLNKGLSITLKDDRKEKE-------QVFHYK 230

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+ +++    E ++ +   I+             +E A+ + +     + S+ N I T 
Sbjct: 231 GGIVSFVDHLNEAKTPLHKPIYVQTERADLI----LEVALQYNDGYAENLFSFANNINTK 286

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           EGGTH  G + ALTR I  YA       K   S+  DD+      ++SV +R P+F GQT
Sbjct: 287 EGGTHLVGFKAALTRTINSYANANDLLKKDTESLSGDDVREGLTAVVSVKVRNPQFEGQT 346

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKT 442
           K KL + + +  VE A+ D    Y  +NP  A K++   I+ +  R   RK ++ + RK+
Sbjct: 347 KAKLGNSEVKGIVEAAVNDALGTYFEENPPVARKIIGKAIDAARAREAARKAKDLIRRKS 406

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADCS+     +ELFIVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A
Sbjct: 407 ALDGGSLPGKLADCSEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKA 466

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREED-----------LRYEKVIIMTDADVDGAHI 551
             +K+ ++ +I  L+ ALG     +  + D            RY K+++MTDADVDG+HI
Sbjct: 467 RFDKMLSSDEIRTLILALGTGIGRKKEDSDKPDKEAFDIARTRYHKIVLMTDADVDGSHI 526

Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
            +LLLTFF+++M +L+E+ ++++  PPLF++ +G    Y  DE    + L + 
Sbjct: 527 RTLLLTFFFRQMPELLERGYIYIAQPPLFKVKKGKTERYLKDEPAMNEYLADL 579



 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 14/113 (12%)

Query: 576 SPPLFRITQGTKSVYAHDEEHKQ---KILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
            PP ++I           E HK    ++++   + GK  + I R+KGLGEM   QL ET 
Sbjct: 722 KPP-YKIKIKG------TEVHKNGSAELVQAILEEGKQGLNIQRYKGLGEMNPGQLWETT 774

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           MD  KRTLLRV++      +    +    LMG + + R  FIQ+ A  + ++ 
Sbjct: 775 MDPEKRTLLRVKLED----MTGVDEIFTILMGDEVEPRRNFIQQHALEVRNLD 823


>gi|288818582|ref|YP_003432930.1| DNA gyrase B subunit [Hydrogenobacter thermophilus TK-6]
 gi|288787982|dbj|BAI69729.1| DNA gyrase B subunit [Hydrogenobacter thermophilus TK-6]
 gi|308752173|gb|ADO45656.1| DNA gyrase, B subunit [Hydrogenobacter thermophilus TK-6]
          Length = 786

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 223/578 (38%), Positives = 331/578 (57%), Gaps = 17/578 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + Y A  I+ + GLE VR+RP MYIG   E+ LHHL  E++DNA+DE +AGYA  I V +
Sbjct: 4   ERYQAEDIKAVTGLEHVRLRPSMYIGDVGERGLHHLLWEILDNAVDEHVAGYAKNISVVI 63

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G ++V D+GRGIPV+ HP       ++++ T L AGGKFD   Y  SGGLHGVG SV
Sbjct: 64  HEDGSVSVEDDGRGIPVDLHP-DTGIPAVQMVFTMLGAGGKFDKKVYRYSGGLHGVGASV 122

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+ L V V R   I  Q++SRG PL PL+        RGT++TF+PD  IF     
Sbjct: 123 VNALSEWLAVEVYRDGKIHRQEYSRGEPLYPLKVIGSTIK-RGTKVTFKPDADIFETT-K 180

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
                + +  +  AYL+         ++   E         + F  G++  ++     + 
Sbjct: 181 IKLDLVERRVRELAYLNPDCTFRLLDERIGKE-------FVYKFDKGIEELVKFLSTGKE 233

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            +  ++   + E++G     V+ A  + ++    + S+ N I T EGGTH +G R  LT+
Sbjct: 234 PLFDQVIRIREEREGV---DVDVAFLYTKDYRELVESFVNNIKTVEGGTHITGFRSGLTK 290

Query: 341 GIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            + +  ++ + ++ +      +DL    V ++S  + EP+F GQTKTKL + + +  VE+
Sbjct: 291 AVMRSLQIIKLQKELKEAITGEDLREGLVAVVSCKVPEPQFEGQTKTKLGNQNVKSIVES 350

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            + +    Y  +N     K++E  +E +  R   +K +E V RK+ +    LPGKLADCS
Sbjct: 351 VVYEHLSEYFEENKEIYRKIVEKAVEAALAREAAKKAKELVRRKSPLEDTTLPGKLADCS 410

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           +      ELFIVEG+SAGGSAKQ R+R  QA+LPLRGKILNV  A  +K+ +N++I  +V
Sbjct: 411 EKDPQKCELFIVEGESAGGSAKQGRDRRTQAILPLRGKILNVEKARLDKVFSNEEIKAIV 470

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ++GC    +     LRY KVI+MTDADVDG+HI +LLLTFFY+ M  LIE  HL++  P
Sbjct: 471 SSIGCGIGDELDLSKLRYHKVILMTDADVDGSHIRTLLLTFFYRYMPKLIEAGHLYIAQP 530

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615
           PL+R+ +G   +Y  D+   +  L E+ K+    I+  
Sbjct: 531 PLYRLKKGKTVLYLKDDRELENTLMEYIKNQGTLIDAQ 568



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 4/88 (4%)

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
            +IL  F +  K   E+ R+KGLGEM   QL ET M+   R LL++ I        +   
Sbjct: 702 HQILSSFMELAKESFEVQRYKGLGEMNPEQLWETTMNPATRRLLKISIED----AAEADR 757

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
               LMG   + R +FI+  A  + ++ 
Sbjct: 758 IFTILMGEDVEPRREFIETYAREVRNLD 785


>gi|94967039|ref|YP_589087.1| DNA gyrase subunit B [Candidatus Koribacter versatilis Ellin345]
 gi|94549089|gb|ABF39013.1| DNA gyrase subunit B [Candidatus Koribacter versatilis Ellin345]
          Length = 879

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 219/600 (36%), Positives = 348/600 (58%), Gaps = 12/600 (2%)

Query: 15  QSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKAL 74
           ++  ++   KK     +     N + S +Y+  SI++L G+E VR RP MYIG T E  L
Sbjct: 5   ETAAAAAAEKKLNGATEPKKNGNGNGSSDYNEDSIKVLGGMEAVRKRPAMYIGSTGEMGL 64

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPV-ENHPKFPNKSTLEII 133
           HHL  EV+DN++DE +AG+A+ I+V++  +  +TV+DNGRGIP  +           +++
Sbjct: 65  HHLVYEVVDNSVDEALAGHADRIDVTIHIDNSITVIDNGRGIPTGDMDIDGEMIPAAQVV 124

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           +T LHAGGKFD+S Y++SGGLHGVG+S VNALS  L + + R   ++ Q++S G+P + L
Sbjct: 125 MTVLHAGGKFDSSNYKVSGGLHGVGVSCVNALSSLLELEIWRDGHVWQQEYSEGVPTTKL 184

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           +K  K     GT+I F PD KIF   + ++   L    +  A+L+  +    + ++    
Sbjct: 185 KKSGKTTKL-GTKIHFIPDAKIFTV-SEYNYDTLANRLRELAFLNKGLLITLTDERTTDP 242

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
           K G  + +EF + GG+  +++     +S++  +    + E+ G     +E A+ + +   
Sbjct: 243 KTGESKHQEFKYTGGIAEFIKHLNRGKSVLHEKPIYMEAERDGV---AMEIALQYNDAYS 299

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGIL 370
             + S+ N I T +GGTH  G R +LTR I    +     + +  ++  DD+    V ++
Sbjct: 300 ETVFSFANNINTVDGGTHLQGFRSSLTRTINYAGQQLGLFKDVKENLSGDDVREGLVAVI 359

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV + +P+F GQTK KL + D    V+  + +    +  QNP  A K++   IE S  R 
Sbjct: 360 SVKLSQPQFEGQTKGKL-NSDIAGIVQAFVNERLGAFFEQNPPVARKIINKAIEASRARE 418

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK R+   RK A+    LPGKLADCS+      E+++VEG+SAGG+AKQ R+R  QA+
Sbjct: 419 AARKARDLTRRKGALDGGGLPGKLADCSERQPERCEVYLVEGESAGGTAKQGRDRRFQAI 478

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDG 548
           LPL+GKILNV  A  +K+  +++I  ++ ALG    +  +    LRY K+I+MTDADVDG
Sbjct: 479 LPLKGKILNVEKARYDKMLGHEEIRAMITALGTGIGKDDFDYAKLRYGKIILMTDADVDG 538

Query: 549 AHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +HI +LLLTFF++ M +LI++ ++F+  PPL+RI +G    Y  +E    K++ +    G
Sbjct: 539 SHIRTLLLTFFFRHMQELIKRGNVFIAQPPLYRIKKGKFEQYIKNEAEFVKVMVKRAADG 598



 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 4/88 (4%)

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           +++ +     GK +  + R+KGLGEM A QL  T MD  +RTLL V++      + +T+ 
Sbjct: 795 RELFDYVLSEGKKEYSVQRYKGLGEMTAEQLWMTTMDPERRTLLEVKLED----MTETET 850

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
             + LMG   + R KFI+E A  + ++ 
Sbjct: 851 IFSTLMGEDVEARRKFIEENALDVKNLD 878


>gi|148272832|ref|YP_001222393.1| DNA topoisomerase IV subunit B [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830762|emb|CAN01702.1| putative topoisomerase II subunit B [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 692

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 230/697 (32%), Positives = 333/697 (47%), Gaps = 63/697 (9%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A+ NY A  + +LEGLE VR RPGMYIG TD + L H   E+IDN++DE + G+ + I+V
Sbjct: 2   AASNYSARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALGGHGDRIDV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +G + V D  RG+PV+  PK    S +E++ T LHAGGKF + +Y  SGGLHGVG 
Sbjct: 62  RLHPDGSVEVRDTARGVPVDIEPK-TGLSGVEVVFTKLHAGGKFGSGSYASSGGLHGVGA 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN------------------ 201
           SVVNALS+ L V V R     +  F RG P    ++ E   +                  
Sbjct: 121 SVVNALSERLDVEVDRGGKTHAMSFRRGEPGIFEDEGEASPDAPFRPFTSGSELRVVGKV 180

Query: 202 ---KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
                GTRI +  D +IF   A F    LL   +  A+L   +       +        P
Sbjct: 181 RKGVTGTRIRYWADRQIFTRGASFLTEELLGRARQTAFLVPGLSIDIEDLR-----GEQP 235

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTV 302
            +E F F GG+  ++     +  L  +    G                    + T    V
Sbjct: 236 VRESFRFDGGIAEFVDHLAVDAPLTDTWRLEGSGTFTETVPVLTAGGAMVPTELTRECAV 295

Query: 303 EWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI---SII 358
           + A+ W         S+ N I T +GGTH++G    L + ++   E    K  +    + 
Sbjct: 296 DIALRWGTGYDTRFKSFVNIIATPKGGTHQAGFEAGLLKFVRAQVEANARKLKVGTDKLE 355

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL----VQNPIE 414
            DD++     +L+V   EP+F GQTK  L +   +  V   ++            ++  +
Sbjct: 356 KDDVLAGLTAVLTVRFPEPQFEGQTKEVLGTPAVRAIVSQVVQKAMAERFASTRREDKAQ 415

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
              LLE V+   + R+  R  +E   RK A+    LP KL DC  N    +ELFIVEGDS
Sbjct: 416 TAVLLEKVVGEMKSRISARTHKETQRRKNALESSSLPAKLVDCRSNDVANSELFIVEGDS 475

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           A G+AK AR+   QA+LP+RGKILNV  A    + +N +   ++Q LG  +   +     
Sbjct: 476 ALGTAKLARDSEYQALLPIRGKILNVQKASLPDMLSNTECASIIQVLGAGSGRTFDLSAA 535

Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI------TQGTK 587
           RY K+IIM+DADVDGAHI +LLLT F++ M  +I++  +F   PPL R+      ++   
Sbjct: 536 RYGKIIIMSDADVDGAHIRTLLLTLFFRYMRPMIDEGRVFAAVPPLHRVVVMNPGSKPND 595

Query: 588 SVYAHDEEHKQKILEEFKKHGKGKIE-ISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646
            +Y + E     +L + K+ GK   + I R+KGLGEM A QL  T MD       R    
Sbjct: 596 VIYTYSERELAAVLAQAKRQGKRYQDPIQRYKGLGEMDADQLATTTMD----RRNRTLRR 651

Query: 647 KDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
             ++  +        LMG     R +FI + A  + D
Sbjct: 652 VRVDDAEAATRMFELLMGNDVAPRKEFIIDGAGSVRD 688


>gi|124516516|gb|EAY58024.1| DNA gyrase, B subunit [Leptospirillum rubarum]
 gi|206603407|gb|EDZ39887.1| DNA gyrase, B subunit [Leptospirillum sp. Group II '5-way CG']
          Length = 818

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 221/573 (38%), Positives = 332/573 (57%), Gaps = 14/573 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +   + Y A  IR+LEGLE VR+RPGMYIG T    LHHL  E++DN++DE +AG+ 
Sbjct: 2   SSGEPVEEEYTAEHIRVLEGLEAVRVRPGMYIGSTGIDGLHHLVYELVDNSVDEALAGHC 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I +++  +  +TV DNGRGIP   H +   +S  E++LT LHAGGKF+N+ Y++SGGL
Sbjct: 62  SEIHITIHPDRSVTVADNGRGIPTGMHAEQ-KRSAAEVVLTVLHAGGKFNNNLYKVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS+ L + + +   I  Q + +G P +PL    +   +RGT I F PD  
Sbjct: 121 HGVGVSVVNALSETLFLEIHQNGLIHRQTYHKGTPDAPLAVFGETT-QRGTIIRFWPDMT 179

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           I      F    L    +  A+L+  +      ++ + E       E F+F GG+++++ 
Sbjct: 180 IMET-DQFSFDTLAHRFRELAFLNPVLTIHLKDEETLRE-------ETFHFEGGVQSFVS 231

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGL 334
              EN+  +   +F  KT + G+ +  V +      EN  +  + N I T EGGTH  G 
Sbjct: 232 FLNENKKTLHDVLFFRKTLEDGS-QFEVAFQYQESTENETVLGFANNIHTREGGTHVRGF 290

Query: 335 RVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           R A+T+ I ++    Q  +   +  +D+     GI+SV I  P+F GQTK KL S     
Sbjct: 291 RTAITKTINRFIREKQLNKGEEVRGEDVREGLTGIISVRIPGPQFEGQTKAKLGSSWVAG 350

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            +E+ L +       ++P+ A K+ E  +  ++ R   RK ++   RK  +    LPGKL
Sbjct: 351 AMESFLSEALQEKFEEDPLTAKKIAEKAVLTAQAREAARKAKDLAKRKNVLEGSNLPGKL 410

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG-SEKIRNNQQ 512
           ADC ++    +EL+IVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  +   EK   N +
Sbjct: 411 ADCQESDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKGKILNVEKSRGIEKFITNDE 470

Query: 513 IMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +  L+ A+GC    +   E+ LRY K+IIMTDADVDGAHI +LLLTFF++ M  LI+ + 
Sbjct: 471 VRALITAVGCGLGEEEFSEKKLRYHKIIIMTDADVDGAHIRTLLLTFFFRHMNPLIDGQF 530

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           +++  PPL++++ G +  Y  ++E  Q  + E 
Sbjct: 531 VYIAQPPLYKVSYGRQERYLLNDEALQAYILEL 563



 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 9/108 (8%)

Query: 580 FRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           F + +G   + +           LE      + K+ I R+KGLGEM   QL ET MD ++
Sbjct: 717 FVLRRGAEGEEIRFRSPRELLSFLES---PVRQKLSIQRYKGLGEMNPEQLWETTMDPSR 773

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           RTLL+V I   +    +       LMG +   R +FI++ A  + ++ 
Sbjct: 774 RTLLKVSIPDYV----EADRVFTTLMGEQVAPRREFIEKHALDVANLD 817


>gi|90408445|ref|ZP_01216605.1| DNA gyrase subunit B [Psychromonas sp. CNPT3]
 gi|90310429|gb|EAS38554.1| DNA gyrase subunit B [Psychromonas sp. CNPT3]
          Length = 809

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 230/581 (39%), Positives = 345/581 (59%), Gaps = 22/581 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
           A ++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  E++DN++DE +AG+ N I 
Sbjct: 2   AENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEILDNSIDEALAGHCNDIV 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
            ++  +G ++V D+GRGIPV  H K    S  E+I+T LHAGGKFD+++Y++SGGLHGVG
Sbjct: 62  TTIHTDGSVSVRDDGRGIPVGIH-KEEGVSAAEVIMTILHAGGKFDDNSYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           ISVVNALS +L +T+ R   +  Q +  G P +PL+      ++ GT I F P  + F D
Sbjct: 121 ISVVNALSKKLLLTIKRDGHVHQQTYIHGDPEAPLKVIGDT-DETGTEIRFWPSEETFAD 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++E        + + F + GG++ +++   +
Sbjct: 180 VL-FYYNILAKRLRELSFLNSGVSIKLIDERE------EDKSDLFCYEGGIEAFVKYLNK 232

Query: 279 NRSLISSEIFTGKTEK-KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           +++ I  +IF    E   GT    VE A+ W +     I  + N I   +GG+H +G R 
Sbjct: 233 SKTPIHQKIFHFNVENADGTC---VEVAMQWNDGFQENIYCFTNNIPQRDGGSHLTGFRS 289

Query: 337 ALTRGIKKYAEL-----TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            LTR +  Y E        +K   S    D       ++SV + +P+F+ QTK +LVS +
Sbjct: 290 GLTRTLNSYMEKEIAKVKNSKNKASTEGGDSREGLTAVISVKVPDPKFSSQTKDRLVSSE 349

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLP 450
            +  VE+A+ +    +L++NP EA  +   +I+ +  R   RK      RK A+    LP
Sbjct: 350 VRPVVESAMGEKLQEFLLENPSEARIITSKIIDAARAREAARKARDMTRRKGALDLAGLP 409

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 410 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 469

Query: 511 QQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           Q++  L+ ALGC   R +Y  +  RY ++IIMTDADVDG+HI +LLLTFFY++M +LIE+
Sbjct: 470 QEVATLITALGCGIGRDEYNPDKTRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIER 529

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
             +++  PPL+++ +G +  Y  DE   Q  L      G  
Sbjct: 530 GFIYIAQPPLYKVKKGKQETYVKDESELQAYLTTLAMEGSS 570



 Score =  126 bits (317), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           + ++      K  + I R+KGLGEM   QL +T MD N R +L+V I   +         
Sbjct: 726 EAVQWLMHESKRGLYIQRYKGLGEMNPDQLCDTTMDPNTRHMLQVRIEDAV----AADQL 781

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            + LMG   + R  FI+E A  ++++ 
Sbjct: 782 FSTLMGDHVEPRRAFIEENALRVENLD 808


>gi|257455167|ref|ZP_05620405.1| DNA gyrase, B subunit [Enhydrobacter aerosaccus SK60]
 gi|257447500|gb|EEV22505.1| DNA gyrase, B subunit [Enhydrobacter aerosaccus SK60]
          Length = 830

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 229/586 (39%), Positives = 353/586 (60%), Gaps = 19/586 (3%)

Query: 22  KLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSE 80
               + +   S   ++   +  Y + SIR+L GLE VR+RPGMYIG TD+   LHH+  E
Sbjct: 5   SANVADQTQQSITQSSHQENKAYGSDSIRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFE 64

Query: 81  VIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140
           V+DNA+DE +AG+ + I++ +  +  ++V DNGRGIPV+ HP+    S  ++I+T LHAG
Sbjct: 65  VVDNAIDEALAGHCDQIDIIIHEDESVSVKDNGRGIPVDIHPE-EGVSAAQVIMTVLHAG 123

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD+++Y++SGGLHGVG+SVVNALS +L + + R    +SQ ++ G P+SP+E+ E  +
Sbjct: 124 GKFDDNSYKVSGGLHGVGVSVVNALSKKLVLDIWRDGYHYSQTYADGEPVSPIEQLEATQ 183

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
            + GT++ F P   IF     FD   L K  +  ++L+  V+   + +++        ++
Sbjct: 184 -QTGTQVRFYPSDDIFTGTI-FDFEILAKRLRELSFLNSGVRIVLTDERD-------DKR 234

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
            EF   GGL  ++      ++ ++        E  G    +VE A+ W +    ++  + 
Sbjct: 235 HEFEHVGGLSEFVHYINAGKTGLNEVFHFTSEENDGI---SVEVALQWTDSYNEKVLCFT 291

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH SG R ALTR +  Y +      K  +++  DD       I+SV + +P
Sbjct: 292 NNIPQKDGGTHLSGFRSALTRCLNSYMDSENLMKKEKVAVTGDDAREGLTAIISVKVPDP 351

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR- 436
           +F+ QTK KLVS + +  VE+A+ D F  YL++NP  A  +   +I+ +  R   RK R 
Sbjct: 352 KFSSQTKDKLVSSEVKPAVESAMHDKFSAYLLENPNAAKGIAGKIIDAARAREAARKARE 411

Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              RKT +    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR  QA+LPL+GKI
Sbjct: 412 MTRRKTTLDIAGLPGKLADCQEKDPAMSELYIVEGDSAGGSAKQGRNRKMQAILPLKGKI 471

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLL 555
           LNV  A  +K+ ++Q++  L+ ALG      +Y  + LRY K+IIMTDADVDG+HI +LL
Sbjct: 472 LNVERARFDKMLSSQEVGTLITALGTGIGPDEYNPDKLRYHKIIIMTDADVDGSHIRTLL 531

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           LTFF+++  +L+E+ H+++  PPL+++ +G + +Y  D+E  +  L
Sbjct: 532 LTFFFRQTPELLERGHIYIAQPPLYKVKKGRQELYVKDDEALKAYL 577



 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G K +   D  +  + +       +  + I R+KGLGEM A QL ET MD   R +L
Sbjct: 733 IAKGDKKLPIKDMGYLWQFI---MSDARRGLAIQRYKGLGEMNADQLWETTMDPENRHML 789

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +          + LMG   + R  FI+E A  + ++ 
Sbjct: 790 KVTIEDAI----AADHLFSCLMGDDVEPRRAFIEENALTVTNLD 829


>gi|77456232|ref|YP_345737.1| DNA gyrase subunit B [Pseudomonas fluorescens Pf0-1]
 gi|77380235|gb|ABA71748.1| DNA gyrase subunit B [Pseudomonas fluorescens Pf0-1]
          Length = 805

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 225/569 (39%), Positives = 342/569 (60%), Gaps = 19/569 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S  + YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I
Sbjct: 2   SEENTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            + +  +  +TV DNGRGIPV+ H K    S  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  SIIIHPDESITVKDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+EL +TV R   I+ Q +  G+P +P+          GT+I F+   + F 
Sbjct: 121 GVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGD-SETTGTQIHFKASSETFK 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++   
Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G R 
Sbjct: 232 TNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 289 ALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPGKL
Sbjct: 349 AVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMISSQEV 468

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++
Sbjct: 469 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++  PPL+++ +G +  Y  D++  ++ +
Sbjct: 529 YIAQPPLYKVKKGKQEQYIKDDDAMEEYM 557



 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             ++ L+        +  I R+KGLGEM   QL ET MD + R +L+V I   +      
Sbjct: 719 EFKEALDWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIG----A 774

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
               N LMG   + R  FI+  A  + ++ 
Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804


>gi|217978065|ref|YP_002362212.1| DNA gyrase, B subunit [Methylocella silvestris BL2]
 gi|217503441|gb|ACK50850.1| DNA gyrase, B subunit [Methylocella silvestris BL2]
          Length = 821

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 236/585 (40%), Positives = 340/585 (58%), Gaps = 21/585 (3%)

Query: 28  EIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAM 86
               SPAF    A   Y A SI++L GL+ VR RPGMYIG TD+   LHH+  EV+DNA+
Sbjct: 4   PAAASPAFIPAEAEAYYGADSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAI 63

Query: 87  DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146
           DE +AG+A  + V+L+ +G + V D+GRGIP + H +    S  E+I+T LHAGGKFD +
Sbjct: 64  DEALAGHATRVTVTLNADGSVAVTDDGRGIPTDIHSE-EGVSAAEVIMTQLHAGGKFDQN 122

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-----RN 201
           +Y++SGGLHGVG+SVVNALS  L + + R       +F+ G  ++PL+          + 
Sbjct: 123 SYKVSGGLHGVGVSVVNALSSWLKLRIWRDGKEHLIEFAHGDAVTPLKVTGPAPTHDGKP 182

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           KRGT +TF+  P+ F     +D A +    +  A+L+  V+   +  +           E
Sbjct: 183 KRGTEVTFQASPETFTKV-DYDFATIEHRLRELAFLNSGVRIELTDAR-----GAEVRSE 236

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCN 320
             Y+ GGL+ +++     ++ + ++    K E++     TVE A+ W +   E    + N
Sbjct: 237 TLYYDGGLEAFVRYLDRAKTPLIAKPILIKGEREAI---TVEVALWWNDSYHENVLPFTN 293

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPE 378
            I   +GGTH +  R ALTR +  YAE +   +   +    DD       +LSV   +P+
Sbjct: 294 NIPQRDGGTHLAAFRAALTRQLTGYAERSGLLKREKVDLTGDDCREGLTCVLSVKAPDPK 353

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE- 437
           F+ QTK KLVS + +  VE  + +    +L ++P EA  ++  VIE  + R   RK RE 
Sbjct: 354 FSSQTKEKLVSSEVRPAVEGLVNEMLGSWLEEHPQEARTVVGKVIEAGQAREAARKAREL 413

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
             RK A+    LPGKLADC +     +ELF+VEGDSAGGSAKQ RNR  QAVLPLRGKIL
Sbjct: 414 TRRKGALDISNLPGKLADCQERDPAKSELFLVEGDSAGGSAKQGRNREYQAVLPLRGKIL 473

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLL 556
           NV  A  +K+ ++Q+I  L+ ALG          + LRY K+IIMTDADVDG+HI +LLL
Sbjct: 474 NVERARFDKMLSSQEIGTLITALGTGIGRDDFNVDKLRYHKIIIMTDADVDGSHIRTLLL 533

Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           TFF+++M +LIE+ HLF+  PPL+++ +G    Y  DE  ++  L
Sbjct: 534 TFFFRQMRELIERGHLFIAQPPLYKVKRGGSEQYLKDERAREDYL 578



 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 5/88 (5%)

Query: 599 KILEEFKKHGKGKI-EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           ++L      G+  I ++ R+KGLGEM   QL ET +D + R+LL+V+I        D  D
Sbjct: 737 ELLSAVMAAGQKGISQMQRYKGLGEMNPEQLWETTLDRDARSLLQVKI----KEGDDADD 792

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
              KLMG   + R +FIQE A  + ++ 
Sbjct: 793 IFVKLMGDVVEPRREFIQENALNVSNLD 820


>gi|121593432|ref|YP_985328.1| DNA topoisomerase IV subunit B [Acidovorax sp. JS42]
 gi|120605512|gb|ABM41252.1| DNA topoisomerase IV subunit B [Acidovorax sp. JS42]
          Length = 660

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 237/670 (35%), Positives = 345/670 (51%), Gaps = 38/670 (5%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
               +++ +Y   SIR+L+GLEPV+ RPGMY   T      H+  EV+DNA DE +AG+ 
Sbjct: 4   KPASTSASDYSEGSIRVLKGLEPVKQRPGMY---TRTDNPLHIIQEVLDNAADEALAGFG 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA---GGKFDNSTYEIS 151
             I+V+L  +G ++V D+GRGIP   HP+  N   +E++ T LHA     K     Y  S
Sbjct: 61  KKIKVTLHTDGSVSVEDDGRGIPFGLHPE-ENAPVVELVFTRLHAGGKFDKGKGGAYSFS 119

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITF 209
           GGLHGVG+SV NAL+  L V   R+  +    F+ G    PL  +       K+GT +  
Sbjct: 120 GGLHGVGVSVTNALATRLEVATHREGQVARLVFAGGDVTEPLAVRPLQAGERKQGTTVRV 179

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD K F          L  + +SKA L   V      +K           + + + GGL
Sbjct: 180 WPDAKYFESSN-LPMGELTHLLRSKAVLMPGVTVQLVNEKTRD-------TQTWQYKGGL 231

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW----CEENPEITSYCNTILTD 325
           + YL   L    +I      G  ++        E A        E  P   SY N I T 
Sbjct: 232 RDYLAQTLSADPVIPLFEGEGFADRHNESFAEGEGAAWCVAFTEEGQPVRESYVNLIPTS 291

Query: 326 EGGTHESGLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
            GGTHESGLR  L   +K + E  +   + + ++ +D+   A  +L+  + +P+F GQ K
Sbjct: 292 AGGTHESGLRDGLFNAVKSFIELHSLLPKGVKLLPEDVFARASYVLAAKVLDPQFQGQIK 351

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI 444
            +L S DA R V + +R   + +L Q+     KL E  I+ ++ R +  ++ E  + + +
Sbjct: 352 ERLNSRDAVRLVSSFVRPALELWLNQHVEYGKKLAELAIKAAQTRQKAGQKVEKRKGSGV 411

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
             L  PGKL DC        E+F+VEGDSAGGSAK  R++ +QA+LPLRGK+LN      
Sbjct: 412 AVL--PGKLTDCESRDLAYNEVFLVEGDSAGGSAKMGRDKESQAILPLRGKVLNTWEVDR 469

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
           +++  N ++ D+  A+G          D   LRY K+ I++DADVDG+HI  LLLT F++
Sbjct: 470 DRLFANTEVHDISVAIGVDPHGPSDTPDLSGLRYGKICILSDADVDGSHIQVLLLTLFFR 529

Query: 562 EMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKIE 613
               LIE  H+F+  PPLFR+    +G K    VYA DE   + IL++  K G  + K +
Sbjct: 530 HFPKLIEAGHIFVARPPLFRVDVPARGKKPAAKVYALDESELESILDKCAKDGVPREKCQ 589

Query: 614 ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFK 672
           ISRFKGLGEM A QL ET ++ + R LL V++         T+  I KLMG  +A  R +
Sbjct: 590 ISRFKGLGEMNAEQLWETTLNPDTRRLLPVQL--GTFDFSATEGLITKLMGKGEAAARRE 647

Query: 673 FIQERASFID 682
            ++     +D
Sbjct: 648 LMELHGDLVD 657


>gi|88813027|ref|ZP_01128269.1| DNA gyrase subunit B [Nitrococcus mobilis Nb-231]
 gi|88789660|gb|EAR20785.1| DNA gyrase subunit B [Nitrococcus mobilis Nb-231]
          Length = 805

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 227/569 (39%), Positives = 348/569 (61%), Gaps = 19/569 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           SA   Y ++ I+IL GL+ VR RPGMYIG TD+   LHH+  EV DNA+DE +AG+   I
Sbjct: 2   SAQSEYGSAQIKILRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVADNAVDEALAGHCTEI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           EV +  +  +TV DNGRGIPV+ HP+   +S  E+I+T LHAGGKFDN +Y++SGGLHGV
Sbjct: 62  EVMIHADNSVTVTDNGRGIPVDIHPE-EGRSAAEVIMTMLHAGGKFDNRSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+ L + + +   I  Q++  G PL+PL++  +  +  GT++TF P   IF 
Sbjct: 121 GVSVVNALSERLRLVIKKSGHIHLQEYRDGEPLAPLKQLGETND-TGTQVTFHPSSNIFT 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F+   L K  +  ++L+  V+     ++   E       + F + GG++ ++Q   
Sbjct: 180 NI-EFNYDILAKRFRELSFLNPGVRISLKDERTDKE-------DVFEYAGGIRAFVQHLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           +N++ +  + F     K       +E A+ W +     I  + N I   +GGTH +G R 
Sbjct: 232 KNKTPLHRDAFYLNFWKGPV---GIEIAMQWNDSYQENIFCFTNNIPQRDGGTHMAGFRA 288

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I +Y E      K  +    DD+      ++SV + +P+F+ QTK KLVS + + 
Sbjct: 289 ALTRTINQYMESEGYSKKAKLVPTGDDVREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKG 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKL 453
            VE+ L +  + +L ++P  A  ++E VIE +  R   R+ RE+ R+   +    LPGKL
Sbjct: 349 VVESVLAEHLNEWLYEHPGSAKAIVEKVIEAARARDAARRAREMTRRKGVLDVAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++
Sbjct: 409 ADCQERDPARSELYLVEGDSAGGSAKQGRDRRYQAILPLKGKILNVEKARFDKMLSSAEV 468

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC   + ++  + LRY ++IIMTDADVDG+HI +LLLTFFY++M +L+E+ H+
Sbjct: 469 GTLITALGCGIGKEEFDPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMVELVERGHI 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++  PPL+++ +G +  Y  DE+   + L
Sbjct: 529 YIAQPPLYKVKRGKQEDYVKDEKELIEHL 557



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
              +++       K  + + R+KGLGEM  +QL ET MD   R LL+V I   + S    
Sbjct: 719 EFHEVVNWLLDEAKRGLSVQRYKGLGEMNPAQLWETTMDPAARRLLQVRIEDVVAS---- 774

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
            D    LMG + + R +FI+  A    ++ 
Sbjct: 775 DDIFTTLMGDQVEPRREFIENNALSASNLD 804


>gi|49473721|ref|YP_031763.1| DNA gyrase subunit B [Bartonella quintana str. Toulouse]
 gi|49239224|emb|CAF25544.1| DNA gyrase subunit B [Bartonella quintana str. Toulouse]
          Length = 810

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 231/566 (40%), Positives = 333/566 (58%), Gaps = 16/566 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++YDA+SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+A L+ V+
Sbjct: 12  NDYDAASIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHATLVNVT 71

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +G  +V DNGRGIP + HP     S  E+I+T LHAGGKFD ++Y++SGGLHGVG+S
Sbjct: 72  LHTDGSCSVRDNGRGIPTDIHP-TEGISAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVS 130

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  L + + R   I    F+ G+  SPL+       + GT I F P  + F    
Sbjct: 131 VVNALSVWLQLRIKRNGKIHEMSFTHGVADSPLKTVGDCDAENGTEIRFLPSSETFT-MV 189

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   L +  +  A+L+  V       +    +         ++ GGL  +++   +++
Sbjct: 190 EFDFETLERRLRELAFLNSGVHILLVDQRHADVRSVE-----LHYEGGLTEFVKYIDQSK 244

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
             +        + K G    +V+ A+ W +    ++  + N I   +GGTH  G R ALT
Sbjct: 245 KALLDCPIYIASVKDGV---SVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLVGFRSALT 301

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YAE +    K  I++  DD       ILSV + +P+F+ QTK KLVS + +  VE
Sbjct: 302 RQINGYAESSGIAKKEKINLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVE 361

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
           N + +    +L ++P EA  +   V+E +  R   RK RE   RK A+    LPGKLADC
Sbjct: 362 NLVNEGLSAWLEEHPSEAKIVTSKVVEAATAREAARKARELTRRKGALDITSLPGKLADC 421

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            +     +E+FIVEGDSAGGSAK  R+R NQA+LPLRGKILNV  A  +++ ++  I  L
Sbjct: 422 QERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERARFDRMLSSDMIGTL 481

Query: 517 VQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           + ALG          + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE+ HL++ 
Sbjct: 482 ITALGTSIGKDEFSPDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYIA 541

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKIL 601
            PPL+++ +G    Y  +E   ++ L
Sbjct: 542 QPPLYKVARGKSFQYIKNEAAFEEFL 567



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +LE    +GK  I + R+KGLGEM A QL ET ++ + R LL+V+IN       D    
Sbjct: 727 NLLESIFTNGKRGITLQRYKGLGEMNAEQLWETTLNPDARALLQVKINDAT----DADLL 782

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            ++LMG + + R  FI++ A  + ++ 
Sbjct: 783 FSRLMGDEVEPRRAFIKDNALSVANLD 809


>gi|110635929|ref|YP_676137.1| DNA gyrase subunit B [Mesorhizobium sp. BNC1]
 gi|110286913|gb|ABG64972.1| DNA gyrase subunit B [Chelativorans sp. BNC1]
          Length = 815

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 239/565 (42%), Positives = 341/565 (60%), Gaps = 16/565 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGYA+L+ VSL
Sbjct: 14  EYGAESIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYASLVTVSL 73

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G  TV DNGRGIP + H      S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SV
Sbjct: 74  NPDGSCTVTDNGRGIPTDIHA-GEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSV 132

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  L + + R+  I    FS G+P +PL        + GT +TF P P+ F     
Sbjct: 133 VNALSTWLKLKIRRKGQIHEMSFSHGVPDAPLAVTGDAGEETGTEVTFLPSPETFTKT-D 191

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD A L    +  A+L+  V+   S  +    K      ++F + GG+  +++     + 
Sbjct: 192 FDYATLEHRLRELAFLNSGVRILLSDRRHADLKE-----QQFLYDGGIIEFVKYLDRAKK 246

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340
            +  E  +   E+ G    TVE A+ W +   E   ++ N I   +GGTH +G R ALTR
Sbjct: 247 PLIPEPISISGERDGI---TVELAMWWNDSYHENVLAFTNNIPQRDGGTHMAGFRGALTR 303

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +  YA+++    K  +S+  DD       +LSV + +P+F+ QTK KLVS + +  VE+
Sbjct: 304 QVTSYADVSGLTKKEKVSLTGDDCREGLSAVLSVKVPDPKFSSQTKDKLVSSEVRPVVES 363

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCS 457
            + +    +L ++P EA  L+  V+E +  R   RK RE+ R+   +    LPGKLADC 
Sbjct: 364 LVNEALGTWLEEHPAEAKILVGKVVEAAAAREAARKARELTRRKGVLDITSLPGKLADCQ 423

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           +     +ELFIVEGDSAGGSAK  R+R NQA+LPLRGKILNV  A  +++ ++  I  L+
Sbjct: 424 ERDPAKSELFIVEGDSAGGSAKSGRSRKNQAILPLRGKILNVERARFDRMLSSDMIGTLI 483

Query: 518 QALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
            ALG          + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE+ HL++  
Sbjct: 484 TALGTGIGKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYIAQ 543

Query: 577 PPLFRITQGTKSVYAHDEEHKQKIL 601
           PPL+++T+G    Y  DE   ++ L
Sbjct: 544 PPLYKVTRGKSVQYIKDEAAFEEFL 568



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 13/127 (10%)

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
             +    L E        PP+ R    +++V          +L+     G+  + + R+K
Sbjct: 701 IDRYTPRLQEV----FAMPPVLRRNDKSETVSG-----PMALLDAVFATGRKGLTMQRYK 751

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           GLGEM A QL ET +D + R+LL+V++        D      +LMG + + R  FIQE A
Sbjct: 752 GLGEMNAEQLWETTLDPDARSLLQVKVPDAT----DADALFARLMGDEVEPRRDFIQENA 807

Query: 679 SFIDDVG 685
             + ++ 
Sbjct: 808 LSVANLD 814


>gi|56707333|ref|YP_169229.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110669803|ref|YP_666360.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456396|ref|ZP_03664869.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370010|ref|ZP_04986017.1| DNA topoisomerase [Francisella tularensis subsp. tularensis FSC033]
 gi|254874168|ref|ZP_05246878.1| topoisomerase IV [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|56603825|emb|CAG44796.1| Topoisomerase IV, subunit B [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320136|emb|CAL08179.1| Topoisomerase IV, subunit B [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568255|gb|EDN33909.1| DNA topoisomerase [Francisella tularensis subsp. tularensis FSC033]
 gi|254840167|gb|EET18603.1| topoisomerase IV [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158458|gb|ADA77849.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 627

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 243/642 (37%), Positives = 357/642 (55%), Gaps = 21/642 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY+A SI +L GL+PV+ RPGMY   T+ +  +HL  E+IDN++DEV+AG+A+ I ++L
Sbjct: 2   QNYNAKSIEVLTGLDPVKKRPGMY---TNTENPNHLIQEIIDNSVDEVLAGFASKINITL 58

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  + V D+GRG+PV+ HP+    S +E+I+T LH+GGKF N  Y  SGGLHGVG+SV
Sbjct: 59  YEDNSIEVADDGRGMPVDIHPEH-KMSGIELIMTKLHSGGKFSNKNYTHSGGLHGVGVSV 117

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  L   + R   ++   F  G     LE  + V +   GT+I F P+ K F D  
Sbjct: 118 VNALSTRLEAEIKRDGNVYHIVFEDGFKTKDLEIIDNVGKKNTGTKIRFWPNKKYFDDI- 176

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
             +   L  + ++KA L   +   +S + +        EK  ++F  GLK YL  KLE  
Sbjct: 177 KVNFKALKNLLEAKAILCKALTIKYSNEIK-------KEKLTWHFETGLKGYLDHKLEAE 229

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
           +L +            ++   V +            SY N I T + GTH +GL+  +  
Sbjct: 230 TLPAEPFMIDNFSNGDSYLDAV-FCWCEDPSESIKNSYVNLIPTPQDGTHVTGLKNGIYD 288

Query: 341 GIKKYAELTQNK-RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
            IK Y E      + I I ++D       ++SV I  P+FAGQTK KL + D    V  A
Sbjct: 289 AIKAYIEKNSLSVKNIKITANDSFAQLNYVISVKITNPQFAGQTKEKLSNKDVTNFVATA 348

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
           ++D    +L QNP EA +++E + + +++R+    ++   ++     +RLPGKL DC  +
Sbjct: 349 VKDLLTIWLNQNPDEARQIVENISKVAQKRI-NADKKTTRKRIMNTTIRLPGKLTDCISS 407

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
             + TELFIVEGDSAGGSAKQAR+++ QAVLPL+GKILN     ++ I N+Q+I ++  A
Sbjct: 408 DVNSTELFIVEGDSAGGSAKQARDKNFQAVLPLKGKILNSWELDADTIMNSQEIHNIATA 467

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           +G    S      LRY K+ I+ DAD DG HIA+LL   F +    LIE  H+++  PPL
Sbjct: 468 IGVDPDSDDI-SALRYNKICILADADSDGLHIATLLCAMFLKHFRKLIENGHIYIAQPPL 526

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           FRI  G  + YA DE  +  IL +  K   GK+ I RFKGLGEM  +QL+E+AMD + R 
Sbjct: 527 FRIDIGKSTFYALDENERDTILTKNSKL-PGKVNIMRFKGLGEMNPAQLRESAMDVSSRR 585

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           LL++ I+   +  +        L   +A +R  +++      
Sbjct: 586 LLQLTISDVYDDTEMLDML---LAKKRAKDRRDWLENYGDRA 624


>gi|90019653|ref|YP_525480.1| DNA gyrase subunit B [Saccharophagus degradans 2-40]
 gi|89949253|gb|ABD79268.1| DNA gyrase subunit B [Saccharophagus degradans 2-40]
          Length = 808

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 230/566 (40%), Positives = 342/566 (60%), Gaps = 21/566 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  E++DN++DE +AG+ N I+V +
Sbjct: 7   NYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEIVDNSIDEALAGHCNEIKVVI 66

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             N  +TV DNGRGIP E H      S  E+I+T LHAGGKFD++TY++SGGLHGVG+SV
Sbjct: 67  HPNESVTVSDNGRGIPTEMHE--EGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGVGVSV 124

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+ L +T+ R   +F Q +  G+P +PL    +     GT++ F+P  + F +   
Sbjct: 125 VNALSEVLTLTIRRGGQVFEQVYHHGVPQAPLTVIGET-EVSGTQVHFKPSAETFTNI-E 182

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F   +L K  +  ++L+  V+     ++   E       + F + GGLK ++    +N++
Sbjct: 183 FHFDQLGKRLRELSFLNSGVRIVLIDERSGKE-------DVFEYEGGLKAFVGYLNQNKN 235

Query: 282 LISSEIFTGKT-EKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
            I+  I      E+ G     VE A+ W +     I  Y N I   +GGTH +G R ALT
Sbjct: 236 PINKVIHFSTFREEDGV---GVEVALQWNDSFQENIFCYTNNIPQRDGGTHLAGFRAALT 292

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  VE
Sbjct: 293 RNLNSYIESEGLLKKEKVNTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 352

Query: 398 NALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
             L   F  YL++NP EA +++ + +         R+ +    RK A+    LPGKLADC
Sbjct: 353 QELSKSFSEYLLENPQEAKQIVGKMMEAARAREAARKAREMTRRKGALDIAGLPGKLADC 412

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            +     +E+++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++Q++  L
Sbjct: 413 QEKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSQEVGTL 472

Query: 517 VQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           + ALGC     ++  E LRY  +IIMTDADVDG+HI +LLLTFF+++M +LIE+ H+++ 
Sbjct: 473 ITALGCGIGAQEFNPEKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMRELIERGHVYIA 532

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKIL 601
            PPL++I +G +  Y  D++   + L
Sbjct: 533 QPPLYKIAKGKQEQYLKDDDALTQFL 558



 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+      K    I R+KGLGEM   QL ET MD   R +L+V +   +       
Sbjct: 723 FKEALDWIMAESKKGYGIQRYKGLGEMNPEQLWETTMDPETRRMLQVTVEDAIG----AD 778

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R +FI+  A  + ++ 
Sbjct: 779 QIFTCLMGDNVEPRREFIETNALSVANLD 807


>gi|319760166|ref|YP_004124104.1| DNA gyrase subunit B [Candidatus Blochmannia vafer str. BVAF]
 gi|318038880|gb|ADV33430.1| DNA gyrase subunit B [Candidatus Blochmannia vafer str. BVAF]
          Length = 808

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 236/566 (41%), Positives = 341/566 (60%), Gaps = 19/566 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            +YD+SSI+IL+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE IAGY   I V 
Sbjct: 3   SSYDSSSIKILKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEAIAGYCQKIVVI 62

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  +++ D+GRGIP   H +    S  E+I+T LHAGGKFDN++Y++SGGLHGVG+S
Sbjct: 63  IHQDNSVSIQDDGRGIPTGLHEE-EGISAAEVIMTVLHAGGKFDNNSYKVSGGLHGVGVS 121

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS++L + + R   I+ Q +  G P SPL          GT I F P+ +IF +K 
Sbjct: 122 VVNALSEKLELIIERDLKIYKQIYFFGKPKSPLSIVGDSNK-SGTTIRFWPNFQIFTNKI 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  A L +  Q  ++L+  V      ++   E       E F   GG+K +++    N+
Sbjct: 181 EFQYAVLARRFQELSFLNAGVSIVLCDERNGKE-------EVFCCNGGIKEFIKYLNINK 233

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           S I S IF     K       VE A+ W +     I S+ N I   +GGTH SGL+ A+T
Sbjct: 234 SPIHSNIFYCMGNK---GEVNVEVALQWNDSFQERIYSFTNNIPQRDGGTHLSGLKSAIT 290

Query: 340 RGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           R +  Y +       K  I  + +D     V +LSV I+ P+F+ QTK KLVS + +  V
Sbjct: 291 RTMHFYIDKEGYNNKKTKIITLGEDAREGLVAVLSVKIQNPKFSSQTKEKLVSSEVKPAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK-LRLPGKLAD 455
           E+ + +    + ++NPI++  ++  VI  +  R   RK R+++R+  +     LPGKL+D
Sbjct: 351 ESLIYEKLMEFFLENPIDSKNIIGKVISAARARESARKVRDLSRRKGLSDFSILPGKLSD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++M 
Sbjct: 411 CQEKNPRYSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVMT 470

Query: 516 LVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC           LRY  +I+MTDADVDGAHI +LLLTFFY+ M ++IE+ H+F+
Sbjct: 471 LITALGCGIGQNEYNLNKLRYHSIILMTDADVDGAHIRTLLLTFFYRHMPEIIERGHIFI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +S Y  DEE   + 
Sbjct: 531 AQPPLYKVQKGIQSKYLKDEEEMYQY 556



 Score =  126 bits (317), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
             + +E   +  +  + I R+KGLGEM   QL ET M+   R +LRV +   +    +  
Sbjct: 723 FNQAIEWLMQQSRKGLIIQRYKGLGEMNPDQLWETTMNPQNRCMLRVTVKDAI----EAD 778

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           +  + LMG   + R  FI+  A    +V 
Sbjct: 779 NLFSTLMGDLVEPRRAFIEANALKATNVD 807


>gi|167627291|ref|YP_001677791.1| DNA topoisomerase IV subunit B [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597292|gb|ABZ87290.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 627

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 244/643 (37%), Positives = 359/643 (55%), Gaps = 21/643 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY+A SI +L GL+PV+ RPGMY   T+ +  +HL  E++DN++DEV+AGYA+ I ++L
Sbjct: 2   QNYNAKSIEVLTGLDPVKKRPGMY---TNTENPNHLIQEIVDNSVDEVLAGYASKINITL 58

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  + V D+GRG+PV+ HP+    S +E+I+T LH+GGKF N  Y  SGGLHGVG+SV
Sbjct: 59  YDDNSIEVADDGRGMPVDIHPEH-KMSGIELIMTKLHSGGKFSNKNYTHSGGLHGVGVSV 117

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS +L   + R   ++   F  G+    LE  + V +   GT+I F P+ K F D  
Sbjct: 118 VNALSSKLEAEIKRDGNVYQITFEDGLKTKDLEIIDSVGKKNTGTKIRFWPNKKYFDDI- 176

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
             +   L  + ++KA L   +   +S + +        E+  ++F  GLK YL  KLE  
Sbjct: 177 KVNVKALKNLLEAKAILCKALTIKYSNEIK-------KERISWHFETGLKGYLDHKLEAE 229

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
           +L              ++   V +            SY N I T + GTH +GL+  +  
Sbjct: 230 TLPLEPFMIDNFSNGDSYLDAV-FCWCEDPLESIKNSYVNLIPTPQDGTHVTGLKNGVYE 288

Query: 341 GIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
            IK Y E      + + I ++D       ++SV I  P+FAGQTK KL + D    V  A
Sbjct: 289 AIKTYIEKNSLGIKNVKITANDSFAKLNYVISVKITNPQFAGQTKEKLSNKDVTSFVTTA 348

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
           ++D    +L QNP EA +++E +   +++R+    ++   ++     +RLPGKL DC  +
Sbjct: 349 VKDLLTIWLNQNPDEARQIIENINSIAQKRI-NADKKTTRKRIMNTSIRLPGKLTDCISS 407

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
             + TELFIVEGDSAGGSAKQAR+++ QAVLPL+GKILN     ++ I N+Q++ ++  A
Sbjct: 408 DINSTELFIVEGDSAGGSAKQARDKNFQAVLPLKGKILNSWELDADTIMNSQEVHNIATA 467

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           +G    S      LRY K+ I+ DAD DG HIA+LL   F +    LIE  H+++  PPL
Sbjct: 468 IGVDPDSDDI-SGLRYNKICILADADSDGLHIATLLCAMFLKHFRKLIEYGHIYIAQPPL 526

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           FRI  G  + YA DE  K+KIL E  K   GKI I RFKGLGEM   QL+E+AMD + R 
Sbjct: 527 FRIDIGKNTFYALDENEKEKILAENAKL-TGKINIMRFKGLGEMNPIQLRESAMDVSSRR 585

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           LL++ I+   +  +        L   +A +R  +++      +
Sbjct: 586 LLQLTISNTYDDAEILDML---LAKKRAKDRRDWLENHGDKAE 625


>gi|114568568|ref|YP_755248.1| DNA gyrase subunit B [Maricaulis maris MCS10]
 gi|114339030|gb|ABI64310.1| DNA gyrase subunit B [Maricaulis maris MCS10]
          Length = 800

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 234/574 (40%), Positives = 334/574 (58%), Gaps = 17/574 (2%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
            + A+  Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   TEQANQEYGAESIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHCS 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            + V+L  +G  +V D+GRGIP + H +    S  ++I+T LHAGGKFD ++Y++SGGLH
Sbjct: 62  EVLVTLHADGSASVRDDGRGIPTDIHQE-EGVSAAQVIMTQLHAGGKFDQNSYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPK 214
           GVG+SVVNALSD + +T+ R       +F RG     L+        ++GT + F P  +
Sbjct: 121 GVGVSVVNALSDWMDLTIWRNGKRHWMRFRRGDAEEDLKVMGDAEPGQKGTEVRFMPSEE 180

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
            F     F+   L    +  A+L+  VK     ++E          +   + GG+  ++ 
Sbjct: 181 TFT-MTEFNRETLQHRLRELAFLNSGVKITLRDEREA-----ELYSDTMVYDGGVAAFVA 234

Query: 275 TKLENRSLISSEIFTGKTEKKGT-HRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESG 333
               N++ I +       EK G      +EW  ++ E    +  + N I   +GGTH +G
Sbjct: 235 HLDRNKTPIFTPPVLITGEKDGVAVEAALEWNDSYHEN---VLCFTNNIPQRDGGTHLAG 291

Query: 334 LRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR I  YA  +    K  +SI  DD       +LSV + +P+F+ QTK KLVS +
Sbjct: 292 FRGALTRIINTYAASSGLASKAKVSISGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSE 351

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +  ++P EA  ++  +IE +  R   RK RE   RK+A+    LP
Sbjct: 352 VRPAVEGAVGEALAEWFEEHPTEAKMVVGKIIEAAAAREAARKARELTRRKSALEISSLP 411

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +ELFIVEGDSAGGSAKQ R+R NQAVLPLRGKILNV  A  +++  +
Sbjct: 412 GKLADCQEKDPAKSELFIVEGDSAGGSAKQGRHRENQAVLPLRGKILNVERARFDRMLGS 471

Query: 511 QQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           +Q+  L+ ALG    R Q   E LRY KVIIMTDADVDGAHI +LLLTFFY++M +LIE+
Sbjct: 472 EQVGTLITALGTGIGRDQINYEKLRYHKVIIMTDADVDGAHIRTLLLTFFYRQMPELIEK 531

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEE 603
            +L++  PPL++I +G    Y  D+      L E
Sbjct: 532 GYLYIAQPPLYKIAKGRSERYVKDQAEMDAYLIE 565



 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 4/85 (4%)

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           +++++     G   ++I R+KGLGEM   QL ET +D N R+LL+V +           +
Sbjct: 717 RELVDAVVVSGAKGMKIQRYKGLGEMNPGQLWETTLDPNARSLLQVSVTH----ADTADE 772

Query: 658 SINKLMGTKADERFKFIQERASFID 682
             +KLMG   + R  FIQE A   +
Sbjct: 773 LFSKLMGDVVEPRRDFIQEHALEAE 797


>gi|319403524|emb|CBI77105.1| DNA gyrase subunit B [Bartonella rochalimae ATCC BAA-1498]
          Length = 809

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 232/572 (40%), Positives = 340/572 (59%), Gaps = 16/572 (2%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYA 94
               A  +Y ASSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGYA
Sbjct: 5   TTSPACGDYGASSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYA 64

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
            L+ V+L  +G  +V DNGRGIP + HP     S  E+I+T LHAGGKFD ++Y++SGGL
Sbjct: 65  TLVNVTLHADGSCSVRDNGRGIPTDIHP-TEGISAAEVIMTQLHAGGKFDQNSYKVSGGL 123

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS  L + + R   I    F+ G+  SPL+  +   ++ GT ITF P  +
Sbjct: 124 HGVGVSVVNALSVWLRLRIKRNGKIHEMSFTHGVADSPLKIVDDCDSESGTEITFLPSSE 183

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
            F     FD   L +  +  A+L+  +    +  +    +         ++ GGL  +++
Sbjct: 184 TFT-MVEFDFETLERRLRELAFLNSGIHIILTDQRHADVQSVE-----LHYEGGLIEFVK 237

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +++  +         +K G    +V+ A+ W +    ++  + N I   +GGTH +G
Sbjct: 238 HIDQSKKALIDNPIYITNQKDG---MSVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLAG 294

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR I  YAE +    K  +++  DD       ILSV + +P+F+ QTK KLVS +
Sbjct: 295 FRSALTRQINGYAESSGIAKKEKVNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSE 354

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VEN + +    +L ++P EA  L+  V+E +  R   RK RE   RK A+    LP
Sbjct: 355 VRPIVENLVNEGLSSWLEEHPNEAKILISKVVEAAAAREAARKARELTRRKGALDITSLP 414

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +E+FIVEGDSAGGSAK  R+R NQA+LPLRGKILNV  A  +++ ++
Sbjct: 415 GKLADCQERDPTKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERARFDRMLSS 474

Query: 511 QQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           + I  L+ ALG          + +RY K+IIMTDADVDGAHI +LLLTFF+++M +LIE+
Sbjct: 475 EMIGTLITALGTSIGKDEFSPDKVRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIER 534

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
            HL++  PPL+++++G    Y  +E   ++ L
Sbjct: 535 GHLYIAQPPLYKVSRGKSFQYIKNEAAFEEFL 566



 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +LE   K+GK  + + R+KGLGEM A QL ET ++ + RTLL+V+IN       D    
Sbjct: 726 SLLESIFKNGKKGLTLQRYKGLGEMNADQLWETTLNPDARTLLQVKINDAT----DADSL 781

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            ++LMG + + R  FIQ+ A  + ++ 
Sbjct: 782 FSRLMGDEVEPRRSFIQDNALSVANLD 808


>gi|87201322|ref|YP_498579.1| DNA gyrase subunit B [Novosphingobium aromaticivorans DSM 12444]
 gi|87137003|gb|ABD27745.1| DNA gyrase subunit B [Novosphingobium aromaticivorans DSM 12444]
          Length = 835

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 224/588 (38%), Positives = 345/588 (58%), Gaps = 19/588 (3%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVI 90
           +    N   +++Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV DNA+DE +
Sbjct: 2   ASTNENTPNTNSYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEAL 61

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF----DNS 146
           AG+ +L+ + L+ +G ++V DNGRGIP + H +    S  E+I+T LHAGGKF    D++
Sbjct: 62  AGHCDLVLIELNPDGSVSVEDNGRGIPTDIHAE-EGVSAAEVIMTQLHAGGKFENTSDDN 120

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGT 205
            Y++SGGLHGVG+SVVNALS+ L +T+ R       +F+ G    PL  +      K+GT
Sbjct: 121 AYKVSGGLHGVGVSVVNALSEWLELTIWRDGKEHWMRFAHGDAEGPLVVRGPAPEGKKGT 180

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           R+TF+   + F +   FD  +L    +  A+L+  V+      +    K       + ++
Sbjct: 181 RVTFQASHETFKNVLEFDFDKLEHRYRELAFLNSGVRILLRDKRHEEIKEH-----DLFY 235

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGT-HRGTVEWAIAWCEENPEITSYCNTILT 324
            GG+  +++    N+  +  E       + G      +EW  ++      +  + N I  
Sbjct: 236 EGGIAAFVKYLDRNKQPLMPEPVAISANRDGIGIDVALEWNDSY---YENVLCFTNNIPQ 292

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +  R ALTR +  YAE +    K  +S+  DD+      I+SV + +P+F+ Q
Sbjct: 293 RDGGTHLAAFRAALTRTLNGYAERSGMLKKEKVSLTGDDMREGLTAIVSVKLPDPKFSSQ 352

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TK KLVS + ++ +E+ + D    +L +NP  A  +++ VI+ +  R   ++ RE   RK
Sbjct: 353 TKDKLVSSEVRQPLESLMADKMVEWLEENPGHAKSIIQKVIDAAAAREAAKRARELTRRK 412

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            A+    LPGKLADC +      ELF+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  
Sbjct: 413 GAMDIASLPGKLADCQERDPAKCELFLVEGDSAGGSAKQGRDRKTQAILPLKGKILNVER 472

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
           A  ++I +++++  L+QA+G   R ++  E LRY K++IMTDADVDGAHI +LLLTFF++
Sbjct: 473 ARFDRIISSKEVGTLIQAMGTGLRDEFNLEKLRYHKIVIMTDADVDGAHIRTLLLTFFHR 532

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK 609
           +M ++I+  HLF+  PPL+++ +G   VY  D     + L E    G+
Sbjct: 533 QMPEIIKAGHLFIAQPPLYKVAKGRSEVYLKDNAAMDRYLVEAGLSGR 580



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           ++LE     G+  + I R+KGLGEM A QL ET +D + R+LL+V++         T + 
Sbjct: 752 ELLEMVFAGGRKGLSIQRYKGLGEMNAEQLWETTLDPDNRSLLQVKVED----ADVTDEI 807

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             +LMG   + R  FIQE A  + ++ 
Sbjct: 808 FTRLMGDVVEPRRDFIQENALNVANLD 834


>gi|294085122|ref|YP_003551882.1| DNA gyrase,subunit B [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664697|gb|ADE39798.1| DNA gyrase, B subunit [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 816

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 223/579 (38%), Positives = 331/579 (57%), Gaps = 15/579 (2%)

Query: 28  EIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAM 86
           E  + P  A  +   +Y A SI++L GL+ VR RPGMYIG TD+   LHH+  EV+DNA+
Sbjct: 5   EKTNIPDQAAAAVDGDYGAESIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAI 64

Query: 87  DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146
           DE +AG+ +L++V L+ +G ++V DNGRGIPV+ H +    S  E+I+T LHAGGKFDN+
Sbjct: 65  DEALAGHCDLVQVVLNADGSISVTDNGRGIPVDIHHE-EGVSAAEVIMTQLHAGGKFDNN 123

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS+ L +T+ R        F  G     L        + GT 
Sbjct: 124 SYKVSGGLHGVGVSVVNALSEWLRLTIFRNGRKHEMMFKMGEADGALADMGDAEGQTGTH 183

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           +TF P   IF     FD   L    +  A+L+  V+   + ++   E+        F+F 
Sbjct: 184 VTFYPSLDIFSSI-EFDFTTLEHRLRELAFLNSGVRIKMTDNRTSEERVSE-----FFFE 237

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDE 326
           GGL+ ++     +RS +   I         T    + W  ++ E       + N I   +
Sbjct: 238 GGLEAFVTWLNRSRSEMHPTITAISQRDDITVELALAWTDSFHEN---TLCFTNNIPQRD 294

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GG H +G R A+TR +  YA+ +    K  + +  +D       I+SV + +P+F+ QTK
Sbjct: 295 GGAHLAGFRGAMTRVVNNYAQSSGIAKKEKVQLTGEDSREGLTAIVSVKVPDPKFSSQTK 354

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTA 443
            KLVS + +  VE A+ D  + +  ++P EA K++ +     +     R+ +    RK  
Sbjct: 355 DKLVSSEVRPVVEQAVADCLNQWFEEHPAEAKKIVSKAYEAAAAREAARKARDLTRRKGV 414

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +     +E+F+VEGDSAGGSAKQ R+R+NQA+LPLRGKILNV  A 
Sbjct: 415 MDIASLPGKLADCQERDPAKSEIFLVEGDSAGGSAKQGRDRANQAILPLRGKILNVERAR 474

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
            +K+ ++ +I  L+ A+G    +   + + +RY K++IMTDADVDG+HI +LLLTFF++ 
Sbjct: 475 LDKMLSSAEIGTLITAIGAGVGNTEMQLDKVRYHKIVIMTDADVDGSHIRTLLLTFFFRH 534

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           M  LIEQ +L++  PPLFR  +G   VY  D+      L
Sbjct: 535 MRPLIEQGYLYIAQPPLFRAKRGQSEVYLKDQRELDIYL 573



 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 4/78 (5%)

Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667
           G+   +ISR+KGLGEM   QL ET +D ++RT L+V I  +    +D  ++ + LMG   
Sbjct: 742 GRKGAQISRYKGLGEMNPDQLWETTLDPDQRTFLQVVIEHE----EDADNAFSTLMGEAV 797

Query: 668 DERFKFIQERASFIDDVG 685
           +ER  FIQ  A  + ++ 
Sbjct: 798 EERRNFIQTNALRVANLD 815


>gi|167044922|gb|ABZ09588.1| putative DNA gyrase B [uncultured marine microorganism
           HF4000_APKG8D23]
          Length = 646

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 233/652 (35%), Positives = 360/652 (55%), Gaps = 37/652 (5%)

Query: 64  MYIGG-TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122
           M++G   D  ALHH   EV+DNA+DE +AGY + +EV+L+ NG +TV+D+GRGIPV   P
Sbjct: 1   MFLGDPHDGSALHHCIWEVVDNAVDEHLAGYNSTVEVNLEKNGSVTVIDHGRGIPVGKIP 60

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
           +    S  E+I+T LHAGGKFDN  Y+++GGLHGVG+S VNA+S++L +T+ R   +++Q
Sbjct: 61  E-EGVSAAEVIMTKLHAGGKFDNKAYKVAGGLHGVGVSAVNAVSEKLSMTIHRDGKVWTQ 119

Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
            F RG   + L+   K  +   T I F+PD KIF D   FD  ++    +  A+L+  ++
Sbjct: 120 NFVRGKRKAVLKATGKTTSTG-TTINFKPDMKIFSDVTDFDFEQINTRLRRTAFLNAGLQ 178

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH-RGT 301
                 +         +     + GGL+ Y+++  E +  I  E+      K G      
Sbjct: 179 IWLRDFRGQDTVEIEHK-----YDGGLRQYVESMNEKKKAIHDEVIHILGSKDGDKGEVL 233

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI-IS 359
           VE A+ W +     I  + N I   +GG H SGL+ +LTR +  YA+  +  + +S    
Sbjct: 234 VEVALQWTDAYSESIHCFTNIIHNTDGGAHLSGLKSSLTRTVNSYAQSRKLLKNVSSLSG 293

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD+      ++S+   +P F  QTK KLV+ +    VE  + D    Y  +NP  A  ++
Sbjct: 294 DDVREGLSAVISIKHPDPSFNAQTKAKLVTSEVAGIVEQIVNDKLGDYFEENPAVARSIV 353

Query: 420 EWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
           E V+  S+ R   RK R++ R+   +    LPG+LADC        EL+IVEG+SAGGSA
Sbjct: 354 EKVVLASKAREAARKARDLTRRKGVLEGGGLPGQLADCQSRDPAECELYIVEGESAGGSA 413

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSE--KIRNNQQIMDLVQALGCRTRSQ------YRE 530
           K AR+R  QAVLPLRGKILNV        K+ +N+QI  +++ALG    ++      +  
Sbjct: 414 KTARDRRTQAVLPLRGKILNVERQQRNLTKVFSNEQIQRMIRALGAGVGNEEEDEGAFDP 473

Query: 531 EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVY 590
           E LRY K+IIMTDAD+DGAHI +L+LTF ++ M   I   ++++ +PPLF +++G  + +
Sbjct: 474 EKLRYGKIIIMTDADIDGAHIRTLILTFMWRFMRRAIANGNVYIAAPPLFSVSRGKHTEW 533

Query: 591 AHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE----- 644
            H E+ +  +++  +K     KI + R+KGLGEM   QL +T MD   RT+ +V+     
Sbjct: 534 VHTEKDRDAVVKRLQKEAPTAKINVQRYKGLGEMNPEQLWQTTMDPESRTMFQVKMPEKP 593

Query: 645 -----------INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
                      ++ +     +  +  + LMG    +R  FI++ AS +  + 
Sbjct: 594 SEVRFTDVGEQMSDEEAVEGEVNELFSILMGEDVPDRRAFIEKNASKVTALD 645


>gi|153007484|ref|YP_001368699.1| DNA gyrase subunit B [Ochrobactrum anthropi ATCC 49188]
 gi|151559372|gb|ABS12870.1| DNA gyrase, B subunit [Ochrobactrum anthropi ATCC 49188]
          Length = 807

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 229/577 (39%), Positives = 341/577 (59%), Gaps = 18/577 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           N  A   Y A SIR+L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+A 
Sbjct: 2   NSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAT 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
           L+ V+L+ +G  TV DNGRGIP + H K    S  E+I+T LHAGGKFD ++Y++SGGLH
Sbjct: 62  LVTVALNPDGSCTVTDNGRGIPTDIH-KEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS  L + + R   I    F+ G+  +PL        + GT ++F P P  
Sbjct: 121 GVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGAETGTEVSFLPSPDT 180

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     FD   L +  +  A+L+  V+   +  +              ++ GGL  +++ 
Sbjct: 181 FS-MVEFDFDTLERRLRELAFLNSGVRIKLTDRRHADVVEHE-----LHYDGGLVEFVKY 234

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             +++  +  E    ++EK G    TVE A+ W +    ++  + N I   +GGTH +G 
Sbjct: 235 IDQSKKSLLDEPIYIRSEKDG---MTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGF 291

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  YA+ +    K  +++  DD       +LSV + +P+F+ QTK KLVS + 
Sbjct: 292 RGALTRQVTGYADASGMTKKEKVTLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEV 351

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
           +  VE+ + +    +L ++P     ++E VI+ +  R   RK R++ RK+ +    LPGK
Sbjct: 352 RPVVESLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDITRKSNLSVTSLPGK 411

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +     +E+FIVEGDSAGGSAK  R+R NQA+LPLRGKILNV     +++ ++ Q
Sbjct: 412 LADCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQ 471

Query: 513 IMDLVQALGCRT----RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +  L+ ALG          +  + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE
Sbjct: 472 VGTLITALGTSIGKDETHGFNPDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIE 531

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605
           + H+++  PPL+++++G  S Y  +E   +  L E  
Sbjct: 532 RGHIYIAQPPLYKVSRGKSSQYIKNEAAFEDFLIETG 568



 Score =  133 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 9/112 (8%)

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
              PP+ R       V          +L+     G+  + + R+KGLGEM A QL ET +
Sbjct: 704 FAEPPVLR---RKDKVETLSGP--MGLLDAIFATGRKGLTLQRYKGLGEMNAEQLWETTL 758

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D N R+LL+V++        D     ++LMG   + R +FIQE A  + ++ 
Sbjct: 759 DPNVRSLLQVKVTDAT----DADSLFSRLMGDDVEPRREFIQENALSVANLD 806


>gi|134301370|ref|YP_001121338.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134049147|gb|ABO46218.1| DNA topoisomerase IV, B subunit [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 627

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 242/642 (37%), Positives = 357/642 (55%), Gaps = 21/642 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY+A SI +L GL+PV+ RPGMY   T+ +  +HL  E+IDN++DEV+AG+A+ I ++L
Sbjct: 2   QNYNAKSIEVLTGLDPVKKRPGMY---TNTENPNHLIQEIIDNSVDEVLAGFASKINITL 58

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  + V D+GRG+PV+ HP+    S +E+I+T LH+GGKF N  Y  SGGLHGVG+SV
Sbjct: 59  YEDNSIEVADDGRGMPVDIHPEH-KMSGIELIMTKLHSGGKFSNKNYTHSGGLHGVGVSV 117

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  L   + R   ++   F  G     LE  + V +   GT+I F P+ K F D  
Sbjct: 118 VNALSTRLEAEIKRDGNVYHIVFEDGFKTKDLEIIDNVGKKNTGTKIRFWPNKKYFDDI- 176

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
             +   L  + ++KA L   +   +S + +        EK  ++F  GLK YL  K+E  
Sbjct: 177 KVNFKALKNLLEAKAILCKALTIKYSNEIK-------KEKLTWHFETGLKGYLDHKIEAE 229

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
           +L +            ++   V +            SY N I T + GTH +GL+  +  
Sbjct: 230 TLPAEPFMIDNFSNGDSYLDAV-FCWCEDPSESIKNSYVNLIPTPQDGTHVTGLKNGIYD 288

Query: 341 GIKKYAELTQNK-RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
            IK Y E      + I I ++D       ++SV I  P+FAGQTK KL + D    V  A
Sbjct: 289 AIKAYIEKNSLSVKNIKITANDSFAQLNYVISVKITNPQFAGQTKEKLSNKDVTNFVATA 348

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
           ++D    +L QNP EA +++E + + +++R+    ++   ++     +RLPGKL DC  +
Sbjct: 349 VKDLLTIWLNQNPDEARQIVENISKVAQKRI-NADKKTTRKRIMNTTIRLPGKLTDCISS 407

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
             + TELFIVEGDSAGGSAKQAR+++ QAVLPL+GKILN     ++ I N+Q+I ++  A
Sbjct: 408 DVNSTELFIVEGDSAGGSAKQARDKNFQAVLPLKGKILNSWELDADTIMNSQEIHNIATA 467

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           +G    S      LRY K+ I+ DAD DG HIA+LL   F +    LIE  H+++  PPL
Sbjct: 468 IGVDPDSDDI-SALRYNKICILADADSDGLHIATLLCAMFLKHFRKLIENGHIYIAQPPL 526

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           FRI  G  + YA DE  +  IL +  K   GK+ I RFKGLGEM  +QL+E+AMD + R 
Sbjct: 527 FRIDIGKSTFYALDENERDTILTKNSKL-PGKVNIMRFKGLGEMNPAQLRESAMDVSSRR 585

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           LL++ I+   +  +        L   +A +R  +++      
Sbjct: 586 LLQLTISDVYDDTEMLDML---LAKKRAKDRRDWLENYGDRA 624


>gi|222084213|ref|YP_002542739.1| DNA gyrase, B subunit [Agrobacterium radiobacter K84]
 gi|221721661|gb|ACM24817.1| DNA gyrase, B subunit [Agrobacterium radiobacter K84]
          Length = 811

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 237/574 (41%), Positives = 346/574 (60%), Gaps = 16/574 (2%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAG 92
           +      +  Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE + G
Sbjct: 5   SVTENDGNAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALGG 64

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           YA+L+ V+L+ +G +TV DNGRGIP + H      S  E+I+T LHAGGKFD ++Y++SG
Sbjct: 65  YADLVTVTLNPDGSVTVTDNGRGIPTDIH-TGEGISAAEVIMTQLHAGGKFDQNSYKVSG 123

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS  L + + RQ  I    F+ G+  +PL+      ++ GT ++F P 
Sbjct: 124 GLHGVGVSVVNALSVWLKLKIRRQGKINEMSFTHGVADAPLKVTGDAGSETGTEVSFMPS 183

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            + F     FD + L    +  A+L+  V+   +  +    +     +EE  + GGL+ +
Sbjct: 184 SETFT-MTEFDYSTLEHRLRELAFLNSGVRILLTDKRHSDVR-----QEEMLYDGGLEAF 237

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHE 331
           ++     +  +  +  + ++EK G    TVE A+ W E   E    + N I   +GGTH 
Sbjct: 238 VKYLDRAKKPLVDKPVSIRSEKDGI---TVEVAMWWNESYHENVLCFTNNIPQRDGGTHM 294

Query: 332 SGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G R ALTR I  Y E +   +   +    DD       +LSV + +P+F+ QTK KLVS
Sbjct: 295 AGFRGALTRQITSYGESSGITKREKVTLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVS 354

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448
            + +  VE+ + +    +L ++P +A  L+  V+E +  R   RK RE   RK A+    
Sbjct: 355 SEVRPVVESLVNEALGTWLEEHPADAKVLVGKVVEAAAAREAARKARELTRRKGALDIAS 414

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS+     +E+F+VEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  +K+ 
Sbjct: 415 LPGKLADCSERDPAKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 474

Query: 509 NNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
           ++Q+I  L+ ALG          + LRY K+IIMTDADVDGAHI +LLLTFF+++M DLI
Sbjct: 475 SSQEIGTLITALGTGIGKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPDLI 534

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           E+ HL++  PPL+++T+G    Y  DE+  ++ L
Sbjct: 535 ERGHLYIAQPPLYKVTRGKSVQYVKDEKAFEEYL 568



 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 4/86 (4%)

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
           +LE     G+  + + R+KGLGEM A QL ET +D N R+LL+V +        D     
Sbjct: 729 LLETVFAAGRKGLTMQRYKGLGEMNAEQLWETTLDPNARSLLQVRVPDAT----DADGLF 784

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
            +LMG + + R +FIQ+ A  + ++ 
Sbjct: 785 ARLMGDEVEPRREFIQDNALNVANLD 810


>gi|319778798|ref|YP_004129711.1| DNA gyrase subunit B [Taylorella equigenitalis MCE9]
 gi|317108822|gb|ADU91568.1| DNA gyrase subunit B [Taylorella equigenitalis MCE9]
          Length = 813

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 246/633 (38%), Positives = 365/633 (57%), Gaps = 32/633 (5%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGY 93
             + +   +YDASSI++L+GLE VR RPGMYIG T D   LHH+  EV+DN++DE +AGY
Sbjct: 1   MTDSNQKPSYDASSIKMLKGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNSIDEALAGY 60

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFP-NKSTLEIILTTLHAGGKFDNSTYEISG 152
            + I V++  +  ++V DNGRGIPVE H      +S  EI++T LHAGGKFD ++Y++SG
Sbjct: 61  CDDIVVTIHSDNSISVADNGRGIPVEVHKDDEYGRSAAEIVMTELHAGGKFDQNSYKVSG 120

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+S VNALS+ L +T+ R   +    F+RG+ + PL+      +KRGT++ +  D
Sbjct: 121 GLHGVGVSCVNALSEWLRLTIRRDGQVHEMSFNRGVKVEPLKVVGHT-DKRGTKVHYLAD 179

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            +IFG    +      K  +  ++L+  VK     +    E       E F F GG+  +
Sbjct: 180 TEIFGTI-DYSYEVFSKRLRELSFLNNGVKIRLVDELHEKE-------ENFEFSGGVTGF 231

Query: 273 LQTKLENRSLISSEIFTG-KTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTH 330
           +    +++ +I   IF   K+   G     V+ A+ W +  N ++  Y N I   +GGTH
Sbjct: 232 VSYINKSKQVIHPNIFHVSKSSSAGGVEVEVDVAMQWTDSINEQVLCYTNNIPQSDGGTH 291

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +GLR A+TR   KY E T    K  + ++ +D+      +LSV + EP+F+ QTK KLV
Sbjct: 292 LTGLRAAITRVFNKYIESTDLAKKAKVELVGEDMREGLSCVLSVKLPEPKFSSQTKDKLV 351

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447
           S + +  VE  + +  + +L++NP +A  +   +IE +  R   RK RE   RK  +   
Sbjct: 352 SSEVRAPVEEVVAEGLETWLLENPNDARDICVKIIEAARAREASRKARELTKRKGILEGA 411

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +      EL+IVEGDSAGGSAKQ RNR  QA+LPLRGK+LNV  + +++I
Sbjct: 412 GLPGKLADCQEKDPAKCELYIVEGDSAGGSAKQGRNRKFQAILPLRGKVLNVEKSRADRI 471

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             +  I  L+ ALG      +  E LRY ++IIMTDADVDGAHI +LLLT FY++M  L+
Sbjct: 472 FASDAIKTLITALGTSIDKDFNLEKLRYHRIIIMTDADVDGAHIRTLLLTLFYRQMPKLV 531

Query: 568 EQKHLFLISPPLFRIT-QGTK-SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE--M 623
           E+ H+++  PPL+++  +G+K   Y  D+  + + ++E      G         LG+  +
Sbjct: 532 EEGHVYIAQPPLYKVRIKGSKVERYLKDDAEETEFMQELALKDAGID-------LGDRII 584

Query: 624 LASQLK---ETAMDANK--RTLLRVEINKDLNS 651
              +LK    T M A+K  R L R+     L +
Sbjct: 585 EGDELKSYLSTYMSADKVIRRLSRIMDESTLQA 617



 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 18/126 (14%)

Query: 563 MYDLIEQKHLFLISPPLFRITQG---TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
              LI+            ++ +G    +  YA  +   +++++   +     ++  R+KG
Sbjct: 702 FRGLIKDG---------AKVFRGEATKRMEYAVSD--FKQVVDWLFEQASKSVDKQRYKG 750

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679
           LGEM   QL ET MD + R LL+V+I   +          + LMG + + R +FI+E A 
Sbjct: 751 LGEMNPDQLWETTMDPSVRRLLQVQIEDAI----AADQIFDMLMGDRVEPRREFIEENAL 806

Query: 680 FIDDVG 685
            + D+ 
Sbjct: 807 TVSDLD 812


>gi|312958106|ref|ZP_07772629.1| DNA topoisomerase II:ATP-binding region [Pseudomonas fluorescens
           WH6]
 gi|311287537|gb|EFQ66095.1| DNA topoisomerase II:ATP-binding region [Pseudomonas fluorescens
           WH6]
          Length = 805

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 225/569 (39%), Positives = 342/569 (60%), Gaps = 19/569 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S  + YD++SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I
Sbjct: 2   SEENTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            + +  +  +TV DNGRGIPV+ H K    S  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  SIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+EL +TV R   I+ Q +  G+P  P++         GT+I F+P    F 
Sbjct: 121 GVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGD-SETTGTQIHFKPSADTFK 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++   
Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G R 
Sbjct: 232 TNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 289 ALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPGKL
Sbjct: 349 AVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 468

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++
Sbjct: 469 GTLITALGCGIGRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++  PPL+++ +G +  Y  D++  ++ +
Sbjct: 529 YIAQPPLYKVKKGKQEQYIKDDDAMEEYM 557



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
           +  ++ L+        +  I R+KGLGEM   QL ET MD  +R +LRV I   +     
Sbjct: 718 KEFKEALDWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPAQRRMLRVTIEDAIG---- 773

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
                N LMG   + R  FI+  A  + ++ 
Sbjct: 774 ADQIFNTLMGDAVEPRRDFIESNALAVSNLD 804


>gi|15963765|ref|NP_384118.1| DNA gyrase subunit B [Sinorhizobium meliloti 1021]
 gi|307302568|ref|ZP_07582325.1| DNA gyrase, B subunit [Sinorhizobium meliloti BL225C]
 gi|307316101|ref|ZP_07595545.1| DNA gyrase, B subunit [Sinorhizobium meliloti AK83]
 gi|15072940|emb|CAC41399.1| Probable DNA gyrase subunit B [Sinorhizobium meliloti 1021]
 gi|306897941|gb|EFN28683.1| DNA gyrase, B subunit [Sinorhizobium meliloti AK83]
 gi|306903238|gb|EFN33828.1| DNA gyrase, B subunit [Sinorhizobium meliloti BL225C]
          Length = 811

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 236/574 (41%), Positives = 343/574 (59%), Gaps = 16/574 (2%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAG 92
           +     A   Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG
Sbjct: 5   SETEAGAIAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAG 64

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           +A+++ V+L+ +G +TV DNGRGIP + H +    S  E+I+T LHAGGKFD ++Y++SG
Sbjct: 65  HADIVTVTLNPDGSVTVTDNGRGIPTDIHRE-EGVSAAEVIMTQLHAGGKFDQNSYKVSG 123

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS  L + + R   I    F+ G+   PL+       + GT +TF P 
Sbjct: 124 GLHGVGVSVVNALSVSLKLKIRRAGKIHEMSFTHGVADGPLKVTGDAGGETGTEVTFTPS 183

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            + F +   F+   L    +  A+L+  V+   +  +    +      EE  + GGL+ +
Sbjct: 184 EQTFSNI-EFEFGTLEHRLRELAFLNSGVRIVLTDKRHSDIRR-----EEMMYDGGLEAF 237

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHE 331
           +      +  +  +  + + EK G    TVE A+ W +   E    + N I   +GGTH 
Sbjct: 238 VAYLDRAKKPLVQKPVSIRGEKDGI---TVEVAMWWNDSYHENVLCFTNNIPQRDGGTHM 294

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G R ALTR I  YA+ +    K  +S+  DD       +LSV + +P+F+ QTK KLVS
Sbjct: 295 AGFRGALTRQITSYADTSGITKKEKVSLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVS 354

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448
            + +  VE+ + +    +L ++P +A  L+  V+E +  R   RK RE   RK A+    
Sbjct: 355 SEVRPVVESLVNEALSVWLEEHPSDAKILVGKVVEAAAAREAARKARELTRRKGALDISS 414

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS+     +ELF+VEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  +K+ 
Sbjct: 415 LPGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 474

Query: 509 NNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
           ++Q+I  L+ ALG          + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LI
Sbjct: 475 SSQEIGTLITALGTSIGKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELI 534

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           E+ HL++  PPL+++ +G    Y  DE+  +  L
Sbjct: 535 ERGHLYIAQPPLYKVARGKSVQYLKDEKALEDYL 568



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 10/114 (8%)

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           ++   PP+ R   GT+ +        + +L+     G+  + + R+KGLGEM A QL ET
Sbjct: 707 VYGA-PPVLRRRDGTQEISG-----PRALLDAIFAAGRKGLTMQRYKGLGEMNAEQLWET 760

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +D N R+LL+V++        D     ++LMG + + R  FIQE A  + ++ 
Sbjct: 761 TLDPNVRSLLQVKVTDAT----DADGLFSRLMGDEVEPRRDFIQENALSVANLD 810


>gi|241667848|ref|ZP_04755426.1| DNA topoisomerase IV subunit B [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876390|ref|ZP_05249100.1| topoisomerase IV [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842411|gb|EET20825.1| topoisomerase IV [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 627

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 244/643 (37%), Positives = 359/643 (55%), Gaps = 21/643 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY+A SI +L GL+PV+ RPGMY   T+ +  +HL  E++DN++DEV+AGYA+ I ++L
Sbjct: 2   QNYNAKSIEVLTGLDPVKKRPGMY---TNTENPNHLIQEIVDNSVDEVLAGYASKINITL 58

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  + V D+GRG+PV+ HP+    S +E+I+T LH+GGKF N  Y  SGGLHGVG+SV
Sbjct: 59  YDDNSIEVADDGRGMPVDIHPEH-KMSGIELIMTKLHSGGKFSNKNYTHSGGLHGVGVSV 117

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS +L   + R   ++   F  G+    LE  + V +   GT+I F P+ K F D  
Sbjct: 118 VNALSSKLEAEIKRDGNVYQITFEDGLKTKDLEIIDSVGKKNTGTKIRFWPNKKYFDDI- 176

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
             +   L  + ++KA L   +   +S + +        E+  ++F  GLK YL  KLE  
Sbjct: 177 KVNVKALKNLLEAKAILCKALTIKYSNEIK-------KERISWHFETGLKGYLDHKLEAE 229

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
           +L              ++   V +            SY N I T + GTH +GL+  +  
Sbjct: 230 TLPLEPFMIDNFSNGDSYLDAV-FCWCEDPLESIKNSYVNLIPTPQDGTHVTGLKNGVYE 288

Query: 341 GIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
            IK Y E      + + I ++D       ++SV I  P+FAGQTK KL + D    V  A
Sbjct: 289 AIKTYIEKNSLGIKNVKITANDSFAKLNYVISVKITNPQFAGQTKEKLSNKDVTSFVTTA 348

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
           ++D    +L QNP EA +++E +   +++R+    ++   ++     +RLPGKL DC  +
Sbjct: 349 VKDLLTIWLNQNPDEARQIIENINSIAQKRI-NADKKTTRKRIMNTSIRLPGKLTDCISS 407

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
             + TELFIVEGDSAGGSAKQAR+++ QAVLPL+GKILN     ++ I N+Q++ ++  A
Sbjct: 408 DVNSTELFIVEGDSAGGSAKQARDKNFQAVLPLKGKILNSWELDADTIMNSQEVHNIATA 467

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           +G    S      LRY K+ I+ DAD DG HIA+LL   F +    LIE  H+++  PPL
Sbjct: 468 IGVDPDSDDI-SGLRYNKICILADADSDGLHIATLLCAMFLKHFRKLIEYGHIYIAQPPL 526

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           FRI  G  + YA DE  K+KIL E  K   GKI I RFKGLGEM   QL+E+AMD + R 
Sbjct: 527 FRIDIGKNTFYALDENEKEKILAENTKL-TGKINIMRFKGLGEMNPIQLRESAMDVSSRR 585

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           LL++ I+   +  +        L   +A +R  +++      +
Sbjct: 586 LLQLTISNTYDDAEILDML---LAKKRAKDRRDWLENHGDKAE 625


>gi|119896295|ref|YP_931508.1| DNA gyrase subunit B [Azoarcus sp. BH72]
 gi|119668708|emb|CAL92621.1| DNA topoisomerase (ATP-hydrolysing) [Azoarcus sp. BH72]
          Length = 829

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 232/604 (38%), Positives = 347/604 (57%), Gaps = 35/604 (5%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEV 89
             P      + ++YD SSI+ LEGLE VR RPGMYIG T D   LHH+  EV+DNA+DE 
Sbjct: 2   SEPQNTPAPSGNDYDESSIQQLEGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEA 61

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNS 146
           +AG+ + I +++  +  ++V DNGRGIPV         P +S  EI++  LHAGGKF+ +
Sbjct: 62  LAGHCDDIVITIHADNSISVTDNGRGIPVGVKMDDKHEPKRSAAEIVMCVLHAGGKFNQN 121

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLE 194
           +Y++SGGLHGVG+S VNALS  L +T+ R       +F RG P            +SPL+
Sbjct: 122 SYKVSGGLHGVGVSCVNALSKWLRLTIRRDGKKHFMEFHRGAPQDRVIDVVDGVEVSPLK 181

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
              +    RGT + +  D +IFG    +    L K  +  ++L+  VK      +     
Sbjct: 182 VLGETSK-RGTEVHYLADEEIFGTV-EYHYEILAKRLRELSFLNNGVKIRLVDQR----- 234

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK-----GTHRGTVEWAIAWC 309
               ++E+F F GG++ +++     ++++   +F      +     G    +VE A+ W 
Sbjct: 235 --TGKEEDFAFAGGVRGFVEYINRTKAVLHPSVFYAAGTTRIPTGAGEAELSVEVAMQWN 292

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISA 366
           +    ++  Y N I   +GGTH +GLR A+TR I KY E  +   K  + I  DD+    
Sbjct: 293 DSYAEQVLCYTNNIPQADGGTHLTGLRTAMTRVINKYIEENEIAKKAKVDITGDDMREGL 352

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             +LSV + +P+FA QTK KLVS +A+  VE  +      +L++NPI+A  +   ++E +
Sbjct: 353 ACVLSVKMPDPKFASQTKMKLVSSEARPAVEEVVAAKLTDFLLENPIDAKTICNKIVEAA 412

Query: 427 EERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
             R   RK RE+ R+   +  + LPGKLADC +     +EL++VEGDSAGGSAKQ R+R 
Sbjct: 413 RARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRK 472

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
            QA+LPL+GKILNV  A  +K+  +Q+I  L+ ALG    +  Y+ E LRY ++I+MTDA
Sbjct: 473 FQAILPLKGKILNVEKARFDKLLQSQEIATLITALGTSIGKDDYKPEKLRYHRIILMTDA 532

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           DVDGAHI +LLLTFFY++M +L+E+ H+++  PPL++I  G   +Y  D+      L + 
Sbjct: 533 DVDGAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKIKHGKTELYIKDDHELNGHLLKL 592

Query: 605 KKHG 608
              G
Sbjct: 593 ALDG 596



 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G K             +       +  +   R+KGLGEM   QL ET MD   R LL
Sbjct: 732 IRRGEKRQ---TVTRFADAITWLLAEVERGLSKQRYKGLGEMNPEQLWETTMDPAVRRLL 788

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           RV+I+  +       +    LMG   + R  FI+  A +  ++ 
Sbjct: 789 RVQIDDAI----AADEIFTTLMGDNVEPRRAFIESNALYAQNID 828


>gi|78355050|ref|YP_386499.1| DNA gyrase subunit B [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217455|gb|ABB36804.1| DNA gyrase subunit B [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 797

 Score =  502 bits (1292), Expect = e-139,   Method: Composition-based stats.
 Identities = 230/574 (40%), Positives = 336/574 (58%), Gaps = 19/574 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
             N++   +YDA++I +LEGL  VRMRP MYIG TD + LHHL  EV+DN++DE +AGY 
Sbjct: 1   MTNETQKQSYDAANITVLEGLSAVRMRPAMYIGSTDSRGLHHLVYEVVDNSIDEAMAGYC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + + V L  +  +TV+DNGRGIPV+ HPK   +  +E+++T LHAGGKFDN +Y++SGGL
Sbjct: 61  DKVTVKLHLDNSVTVIDNGRGIPVDIHPK-EGRPAVEVVMTVLHAGGKFDNDSYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+S VNALS+ L VTV R    +  +F RG+P+  LE+  +  + RGT I FRPD +
Sbjct: 120 HGVGVSCVNALSEYLEVTVRRDGYKYHHRFERGVPVKELERVGET-DLRGTTIRFRPDEE 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     F    L K  +  AYL+  ++  +  ++         +   F++ GG++ +++
Sbjct: 179 IFET-NQFSFDILKKRFEELAYLNPGLEVEFIDER-------TGDTASFHYEGGIREFVK 230

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
                   + S       E        V++A+ +       + ++ N I T EGGTH +G
Sbjct: 231 NLNSGEGGVHSI-IFASGESDNVM---VDFALQYNAGYKENMLTFANNIRTKEGGTHLAG 286

Query: 334 LRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            + ALTR I  Y + +   +   + +  DD+     G++SV +  P+F GQTKTKL + +
Sbjct: 287 FKTALTRAINNYIQNSDLPKKLKVKLSGDDVREGLTGVVSVKLPNPQFEGQTKTKLGNSE 346

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
               V   + +  + Y  +NP +A  ++E  ++ +  R   RK ++ V RK A+    LP
Sbjct: 347 VAGIVSGLVYENLNTYFGENPKDAKLIIEKAVDAARARDAARKAKDLVRRKGALSDNALP 406

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC       +ELFIVEGDSAGGSAKQ RN S QA+LPLRGKILNV     +K+  N
Sbjct: 407 GKLADCQSKDPSESELFIVEGDSAGGSAKQGRNPSTQAILPLRGKILNVEKTRFDKMLAN 466

Query: 511 QQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           +++  L+ A+G            LRY K++IMTDADVDGAHI +LLLTFFY++  +LI++
Sbjct: 467 KEVKALITAMGAGIGEEDIDYGKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQYPELIDR 526

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEE 603
            HL++  PPLFR+       +  DE      L E
Sbjct: 527 GHLYIAQPPLFRVYNSKFERFIKDETELNTYLLE 560



 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 4/86 (4%)

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
           +L+   +  +  I I R+KGLGEM A QL  T M+   R LL+V+++      ++  +  
Sbjct: 715 LLDHVLQEARKGINIQRYKGLGEMDAEQLWVTTMNPENRVLLQVQVDD----AEEANEIF 770

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
            +LMG + + R +FI   A  + ++ 
Sbjct: 771 EQLMGDRVEPRREFIVRNALSVQELD 796


>gi|16124415|ref|NP_418979.1| DNA gyrase subunit B [Caulobacter crescentus CB15]
 gi|239977278|sp|B8GXQ0|GYRB_CAUCN RecName: Full=DNA gyrase subunit B
 gi|239977279|sp|P0CAX1|GYRB_CAUCR RecName: Full=DNA gyrase subunit B
 gi|13421273|gb|AAK22147.1| DNA gyrase subunit B [Caulobacter crescentus CB15]
 gi|220962270|gb|ACL93626.1| DNA gyrase subunit B [Caulobacter crescentus NA1000]
          Length = 805

 Score =  502 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 230/590 (38%), Positives = 344/590 (58%), Gaps = 26/590 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
              + A+  Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+
Sbjct: 1   MTTEEAAAQYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGH 60

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A  ++V L+ +G +TV D+GRGIPV+ H +    S  E+I+T LHAGGKFD ++Y++SGG
Sbjct: 61  ATKVQVILNADGSVTVTDDGRGIPVDMH-EGEGVSAAEVIMTQLHAGGKFDQNSYKVSGG 119

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV----------RNKR 203
           LHGVG+SVVNALSD L + + R   +   +F RG  ++ L+                   
Sbjct: 120 LHGVGVSVVNALSDWLELLIHRNGKVHQMRFERGDAVTSLKVTGDSPVRTEGPKAGETLT 179

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF P    F     FD   L    +  A+L+  V   +   +++      P +E+ 
Sbjct: 180 GTEVTFFPSKDTFA-FIEFDRKTLEHRLRELAFLNSGVTIWFKDHRDV-----EPWEEKL 233

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           ++ GG++ +++   + ++ +       K  K       ++ A+ W +    ++  + N I
Sbjct: 234 FYEGGIEAFVRHLDKAKTPLLKAPIAVKGVKDKV---EIDLALWWNDSYHEQMLCFTNNI 290

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH S  R ALTR I  YAE +    K  +S+  +D       +LSV + +P+F+
Sbjct: 291 PQRDGGTHLSAFRAALTRIITSYAESSGILKKEKVSLGGEDSREGLTCVLSVKVPDPKFS 350

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VN 439
            QTK KLVS + +  VE  + +    +  ++P EA  ++  + E +  R   RK RE   
Sbjct: 351 SQTKDKLVSSEVRPAVEGLVSEGLSTWFEEHPNEAKAIVTKIAEAAAAREAARKARELTR 410

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK+A+    LPGKLADCS+     +E+FIVEGDSAGGSAKQARNR NQAVLPLRGKILNV
Sbjct: 411 RKSALDITSLPGKLADCSERDPAKSEIFIVEGDSAGGSAKQARNRDNQAVLPLRGKILNV 470

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
             A  +K+ ++ QI  L+ ALG    R  +  + +RY K+++MTDADVDGAHI +LLLTF
Sbjct: 471 ERARFDKMLSSDQIGTLITALGAGIGRDDFNPDKVRYHKIVLMTDADVDGAHIRTLLLTF 530

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           FY++M +LIE+ ++++  PPL++ ++G  S Y  D+      L +    G
Sbjct: 531 FYRQMPELIERGYIYIAQPPLYKASKGKSSRYLKDDAEMDAFLVDEGVDG 580



 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 4/84 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            ++      G+  + I R+KGLGEM   QL ET +DA  RTLL+V +N       D  D 
Sbjct: 723 DLVNAVLDAGRKGLTIQRYKGLGEMNPDQLWETTLDAEARTLLQVRVNH----ADDADDM 778

Query: 659 INKLMGTKADERFKFIQERASFID 682
            ++LMG   + R +FIQE A   +
Sbjct: 779 FSRLMGDLVEPRREFIQENALDAE 802


>gi|85711018|ref|ZP_01042079.1| DNA gyrase subunit B [Idiomarina baltica OS145]
 gi|85695422|gb|EAQ33359.1| DNA gyrase subunit B [Idiomarina baltica OS145]
          Length = 806

 Score =  502 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 221/573 (38%), Positives = 348/573 (60%), Gaps = 17/573 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +NY +SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   ++V 
Sbjct: 4   NNYGSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTGVDVR 63

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +G ++V D+GRGIPV+ H +    S  ++I+T LHAGGKFD+++Y++SGGLHGVG+S
Sbjct: 64  IHSDGSVSVRDDGRGIPVDLHEE-EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 122

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALSD+L +T+ RQ  ++ Q +  G P + +++     ++ GT + F P   IF D  
Sbjct: 123 VVNALSDKLKLTIRRQGHVYEQTYHLGEPETDVQQIGDT-DQTGTELRFWPSASIFSDT- 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L K  +  ++L+  V    S +++         K+EF + GG+  ++    + +
Sbjct: 181 EFHYDILAKRLRELSFLNSGVAIRLSDERD-------DRKDEFKYEGGISAFVTYLNKAK 233

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + I    F   +E++     +VE ++ W +     I  Y N I   +GGTH +G R ALT
Sbjct: 234 TPIHPNPFHFTSERE-EDGISVEVSMQWNDSFQENIYCYTNNIPQRDGGTHLAGFRAALT 292

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  Y E      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE
Sbjct: 293 RTLNSYMEKEGFTKKTKTAATGDDAREGLTAVISVKVPDPKFSSQTKEKLVSSEVKSAVE 352

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADC 456
            A+ +    +L++NP ++  ++  +++ +  R   RK R    RK A+    LPGKLADC
Sbjct: 353 QAMNERLADFLLENPQDSKLIVNKIVDAARAREAARKAREMTRRKGALDIAGLPGKLADC 412

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L
Sbjct: 413 QEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVGTL 472

Query: 517 VQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           + A+GC   R +Y  +  RY ++IIMTDADVDG+HI +LLLTFFY++M ++IE+ ++++ 
Sbjct: 473 ITAMGCGIGRDEYDPDKTRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYIYIA 532

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
            PPL+++ +G +  Y  D+    + L       
Sbjct: 533 QPPLYKVKKGKQETYIKDDPALIRYLTSLALDN 565



 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           +T+G K        H  + +E      K  + + R+KGLGEM   QL ET MD   R +L
Sbjct: 709 VTRGEKRQ---PVSHFVEAVEWLISESKRGLYVQRYKGLGEMNPEQLWETTMDPETRRML 765

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +          + LMG   + R  FI+  A  + ++ 
Sbjct: 766 QVTIEDAIG----ADQLFSTLMGDDVEPRRNFIESNALKVANLD 805


>gi|222110142|ref|YP_002552406.1| DNA topoisomerase iv subunit b [Acidovorax ebreus TPSY]
 gi|221729586|gb|ACM32406.1| DNA topoisomerase (ATP-hydrolyzing) [Acidovorax ebreus TPSY]
          Length = 660

 Score =  502 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 237/670 (35%), Positives = 345/670 (51%), Gaps = 38/670 (5%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
               +++ +Y   SIR+L+GLEPV+ RPGMY   T      H+  EV+DNA DE +AG+ 
Sbjct: 4   KPASTSASDYSEGSIRVLKGLEPVKQRPGMY---TRTDNPLHIIQEVLDNAADEALAGFG 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA---GGKFDNSTYEIS 151
             I+V+L  +G ++V D+GRGIP   HP+  N   +E++ T LHA     K     Y  S
Sbjct: 61  KKIKVTLHTDGSVSVEDDGRGIPFGLHPE-ENAPVVELVFTRLHAGGKFDKGKGGAYSFS 119

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITF 209
           GGLHGVG+SV NAL+  L V   R+  +    F+ G    PL  +       K+GT +  
Sbjct: 120 GGLHGVGVSVTNALATRLEVATHREGQVARLVFAGGDVTEPLAARPLQAGERKQGTTVRV 179

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD K F          L  + +SKA L   V      +K           + + + GGL
Sbjct: 180 WPDAKYFESSN-LPMGELTHLLRSKAVLMPGVTVQLVNEKTRD-------TQTWQYKGGL 231

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW----CEENPEITSYCNTILTD 325
           + YL   L    +I      G  ++        E A        E  P   SY N I T 
Sbjct: 232 RDYLAQTLSADPVIPLFEGEGFADRHNESFAEGEGAAWCVAFTEEGQPVRESYVNLIPTS 291

Query: 326 EGGTHESGLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
            GGTHESGLR  L   +K + E  +   + + ++ +D+   A  +L+  + +P+F GQ K
Sbjct: 292 AGGTHESGLRDGLFNAVKSFIELHSLLPKGVKLLPEDVFARASYVLAAKVLDPQFQGQIK 351

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI 444
            +L S DA R V + +R   + +L Q+     KL E  I+ ++ R +  ++ E  + + +
Sbjct: 352 ERLNSRDAVRLVSSFVRPALELWLNQHVEYGKKLAELAIKAAQTRQKAGQKVEKRKGSGV 411

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
             L  PGKL DC        E+F+VEGDSAGGSAK  R++ +QA+LPLRGK+LN      
Sbjct: 412 AVL--PGKLTDCESRDLAYNEVFLVEGDSAGGSAKMGRDKESQAILPLRGKVLNTWEVDR 469

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
           +++  N ++ D+  A+G          D   LRY K+ I++DADVDG+HI  LLLT F++
Sbjct: 470 DRLFANTEVHDISVAIGVDPHGPSDTPDLSGLRYGKICILSDADVDGSHIQVLLLTLFFR 529

Query: 562 EMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKIE 613
               LIE  H+F+  PPLFR+    +G K    VYA DE   + IL++  K G  + K +
Sbjct: 530 HFPKLIEAGHIFVARPPLFRVDVPARGKKPAAKVYALDESELESILDKCAKDGVPREKCQ 589

Query: 614 ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFK 672
           ISRFKGLGEM A QL ET ++ + R LL V++         T+  I KLMG  +A  R +
Sbjct: 590 ISRFKGLGEMNAEQLWETTLNPDTRRLLPVQL--GTFDFSATEGLITKLMGKGEAAARRE 647

Query: 673 FIQERASFID 682
            ++     +D
Sbjct: 648 LMELHGDLVD 657


>gi|148261868|ref|YP_001235995.1| DNA gyrase, B subunit [Acidiphilium cryptum JF-5]
 gi|326405373|ref|YP_004285455.1| DNA gyrase subunit B [Acidiphilium multivorum AIU301]
 gi|146403549|gb|ABQ32076.1| DNA gyrase subunit B [Acidiphilium cryptum JF-5]
 gi|325052235|dbj|BAJ82573.1| DNA gyrase subunit B [Acidiphilium multivorum AIU301]
          Length = 812

 Score =  502 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 228/591 (38%), Positives = 347/591 (58%), Gaps = 19/591 (3%)

Query: 24  KKSGEIPDSPAFANQSASDN--YDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSE 80
             + +    PA  + +A+ +  YDA+SI +L GL+ VR RPGMYIG TD+   LHH+  E
Sbjct: 2   TSTADSTAVPASEDPAAAPDGVYDAASISVLRGLDAVRKRPGMYIGDTDDGSGLHHMGFE 61

Query: 81  VIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140
           +IDNA+DE  AG+A+ ++V L+G+G +TV DNGRGIP + HP+    S  E++LT LHAG
Sbjct: 62  IIDNAVDEAQAGFADRVDVVLNGDGSMTVTDNGRGIPTDIHPE-EGISAAEVVLTRLHAG 120

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKF+ ++Y++SGGLHGVG +VVNALS+ + V + R       +F  G  ++PL       
Sbjct: 121 GKFNQNSYKVSGGLHGVGAAVVNALSEWMEVRIWRDGKEHLIRFENGDTVAPLAVVGASE 180

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
           +  GT +TFRP    F     FD A   +  +  A+L+  +      ++  A      ++
Sbjct: 181 HGTGTSVTFRPSAATFTR-TEFDFAIYERRLRELAFLNSGLTINLRDERHSAV-----QE 234

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
             F + GGL  ++      ++ + S   T   +        VE+A+AW +     +  + 
Sbjct: 235 AHFRYEGGLVEFVSWLDRAKTQLFSPPVTA-FKDDAPGGIKVEFALAWNDTYHETMLCFT 293

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEF 379
           N I+  +GGTH +G R ALTR + KYAE    K ++S+  +D+      +LSV + +P+F
Sbjct: 294 NNIVQRDGGTHLAGFRSALTRVVSKYAESLGKKDSLSLSGEDMREGLTAVLSVKVPDPKF 353

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN 439
           + QTK KLVS + Q  V+ A+ D  +H+   +P E   + + V++ +  R   RK RE+ 
Sbjct: 354 SSQTKDKLVSSEVQPLVQAAVADALEHWFETHPKEGRLIAQKVMDAASAREAARKARELT 413

Query: 440 RKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
           R+   +    LPGKLADC +     +E+FIVEGDSAGGSAKQ R+R  QA+LPL+GKILN
Sbjct: 414 RRKGVLDISTLPGKLADCQERDPAKSEIFIVEGDSAGGSAKQGRDRKTQAILPLKGKILN 473

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQ------YREEDLRYEKVIIMTDADVDGAHIA 552
           V  A  +++  + +I  L+ ALG            +    LRY +++IMTDADVDG+HI 
Sbjct: 474 VERARFDRMLGSAEIGTLITALGTGIGPAEPEQGGFDISKLRYHRIVIMTDADVDGSHIR 533

Query: 553 SLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEE 603
           +LLLTFF+++M +LIE+ HL++  PPL+R+ +G +  Y  D++  +  L E
Sbjct: 534 TLLLTFFFRQMRELIERGHLYIAQPPLYRVKRGNEERYLKDDDAMEAYLFE 584



 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            ++E     G+  + I RFKGLGEM   QL +T +D   R LL+V I       +D+   
Sbjct: 729 SLIETLFGIGRKGLSIQRFKGLGEMNPDQLWQTTLDPTTRRLLQVRIGD----AEDSDQI 784

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            + LMG   + R +FI   A  + ++ 
Sbjct: 785 FSTLMGDVVEPRREFIVGNALKVANLD 811


>gi|222147027|ref|YP_002547984.1| DNA gyrase subunit B [Agrobacterium vitis S4]
 gi|221734017|gb|ACM34980.1| DNA gyrase subunit B [Agrobacterium vitis S4]
          Length = 811

 Score =  502 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 232/575 (40%), Positives = 343/575 (59%), Gaps = 16/575 (2%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIA 91
                 +AS  Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +A
Sbjct: 4   TTDEANAASTAYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALA 63

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+A+++ V+L+ +G +TV DNGRGIP + H      S  E+I+T LHAGGKFD ++Y++S
Sbjct: 64  GHADIVTVTLNADGSVTVTDNGRGIPTDIH-TGEGISAAEVIMTQLHAGGKFDQNSYKVS 122

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS +L + + R   +    F+ G+  +PL      + + GT ITF P
Sbjct: 123 GGLHGVGVSVVNALSVKLSMKIRRHGKVHEMSFTHGVADAPLAVTGDYQGRSGTEITFLP 182

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F     FD   L    +  A+L+  V+   +  ++   +     +EE  + GGL+ 
Sbjct: 183 STETFTQV-EFDYGTLEHRLRELAFLNSGVRILLTDKRKSDIR-----QEEMLYDGGLEA 236

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTH 330
           +++    ++  + S     + EK G    TVE A+ W +   E    + N I   +GGTH
Sbjct: 237 FVRYLDRSKKPLVSNPVAIRGEKDGI---TVEVAMWWNDSYHENVLCFTNNIPQRDGGTH 293

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR I  YA+ +    K  +++  +D       +LSV + +P+F+ QTK KLV
Sbjct: 294 MAGFRGALTRQITSYADSSGITKKEKVTLQGEDCREGLSAVLSVKVPDPKFSSQTKDKLV 353

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE+ + +    +  ++P EA  L+ + V         R+ +    RK A+   
Sbjct: 354 SSEVRPVVESLVNEALSTWFEEHPTEAKILVGKVVEAAVAREAARKARELTRRKGALDIA 413

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADCS+     +ELF+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +K+
Sbjct: 414 SLPGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRERQAILPLRGKILNVERARFDKM 473

Query: 508 RNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
            ++Q+I  L+ ALG          + LRY K+IIMTDADVDGAHI +LLLTFF+++M +L
Sbjct: 474 LSSQEIGTLITALGTSIGKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPEL 533

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           IE+ HL++  PPL+++T+G    Y  DE+  ++ L
Sbjct: 534 IERGHLYIAQPPLYKVTRGKSIQYLKDEKALEEYL 568



 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 9/110 (8%)

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PP+     G +++        + +L+     G+  + + R+KGLGEM A QL ET +D 
Sbjct: 710 QPPVLTRKDGQQTISG-----PRNLLDAVFSFGRKGLSMQRYKGLGEMNAEQLWETTLDP 764

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           N R+LL+V +N       D     ++LMG + + R  FIQE A  + ++ 
Sbjct: 765 NVRSLLQVRVNDAT----DADSLFSRLMGDEVEPRRDFIQENALNVANLD 810


>gi|221135258|ref|ZP_03561561.1| DNA gyrase subunit B [Glaciecola sp. HTCC2999]
          Length = 808

 Score =  502 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 224/583 (38%), Positives = 349/583 (59%), Gaps = 20/583 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S  +NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I
Sbjct: 2   SEENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           ++ +  +G + V D+GRGIP E H +    S  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  KIKIHTDGSVAVSDDGRGIPTEIHAE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS +L + + R   +  Q++  G+P +PL       +  GT I F P    F 
Sbjct: 121 GVSVVNALSHKLRLRIKRLGKVHEQEYIHGVPSAPLAVVGDTSS-TGTEIRFWPSEDTFT 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      +++        +++ F + GG++ +++   
Sbjct: 180 NI-EFHYDVLAKRLRELSFLNSGVSIILEDERD-------GKRDHFKYEGGIQAFVEYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           +N++ +  + F    E++     +VE ++ W +     I  + N I   +GGTH +G R 
Sbjct: 232 QNKTPVHQKPFQFNVERED--GISVEVSMQWNDSFQENIFCFTNNIPQRDGGTHLAGFRS 289

Query: 337 ALTRGIKKYA----ELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           ALTR +  +        +NK A +   DD       ++SV + +P+F+ QTK KLVS + 
Sbjct: 290 ALTRTLNTFMEKEGFNKKNKNATNASGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEV 349

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451
           +  VE+A+ +    +L++NP +A  ++  +I+ +  R   RK R    RK A+    LPG
Sbjct: 350 KSAVESAMGESLTEFLLENPADAKVIVGKIIDAARAREAARKAREMTRRKGALDLAGLPG 409

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q
Sbjct: 410 KLADCQEKDPAFSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 469

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALGC   R +Y  E LRY  +IIMTDADVDG+HI +LLLTFFY++M ++IE+ 
Sbjct: 470 EVATLITALGCGIGRDEYNPEKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERG 529

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613
           ++++  PPL++I +G +  Y  D++     L            
Sbjct: 530 YVYIAQPPLYKIKKGKQEQYLKDDDALNAYLTSIAVDNSSLYT 572



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 4/93 (4%)

Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652
             E  ++ LE      K    I R+KGLGEM   QL ET MD N R +L+V+I   +   
Sbjct: 719 TVESFKEALEWLMHEAKRGQYIQRYKGLGEMNPDQLWETTMDPNSRRMLQVKIEDAIG-- 776

Query: 653 KDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
                    LMG + + R  FI+  A  ++++ 
Sbjct: 777 --ADQLFTTLMGDQVEPRRNFIEANALNVENLD 807


>gi|320531398|ref|ZP_08032366.1| DNA gyrase, B subunit, carboxyl terminus [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320136399|gb|EFW28379.1| DNA gyrase, B subunit, carboxyl terminus [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 750

 Score =  502 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 230/745 (30%), Positives = 346/745 (46%), Gaps = 97/745 (13%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
           P+  N+++  +Y A  + +LEGLE VR RPGMYIG TD++ L H   E++DNA+DE + G
Sbjct: 2   PSSENKTSRGDYSARHLSVLEGLEAVRKRPGMYIGSTDQRGLMHCVWEIVDNAVDEALEG 61

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           + + I V++  +G + V DNGRG+PV+  P     + +E++ T LHAGGKF   +Y  +G
Sbjct: 62  HGDDISVTVHDDGSIEVRDNGRGVPVDIEP-SSGLTGVELVYTKLHAGGKFGGGSYGAAG 120

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------------- 199
           GLHGVG SVVNAL++ + V V R    ++  F RG P    +   +              
Sbjct: 121 GLHGVGASVVNALAERMDVEVDRGGKTYAMSFHRGEPGIFDDSAGRSPSSLFTEFTKASE 180

Query: 200 --------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-- 249
                   R   GTR+ +  DP+IF     +DAA L    +  ++L   +       +  
Sbjct: 181 LRVVGKVRRGVTGTRVRYWADPQIFPKPTEYDAAALRARLRQTSFLVPGLTLRLEDKRPE 240

Query: 250 --------------------------------------EIAEKYGIPEKEEFYFPGGLKT 271
                                                 ++ +       E F   GG   
Sbjct: 241 AEAIAASTTPAADAGETDDAVHEVTLRAAAKNTTENRGDLFDTGTDDGVEVFQALGGTAD 300

Query: 272 YLQTKLENRSLISSEIFTGKTE-----------------KKGTHRGTVEWAIAWCEENPE 314
           ++     + S+  +   TG+                    +      V+ A+ W      
Sbjct: 301 FVDFLASDGSVTDTFRLTGEGSYTETVQQLDRASGHLRPVEVERTCMVDVALRWGIGYDT 360

Query: 315 IT-SYCNTILTDEGGTHESGLRVALTRGIKKYAEL-----TQNKRAISIISDDLMISAVG 368
              S+ N I T  GGTH +G   ALT+ ++K  E          +   +  DD+M     
Sbjct: 361 TERSFVNIIATPMGGTHLTGFEQALTKVLRKRIEADSRALKLTSKDGRVEKDDIMAGLTA 420

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF----DHYLVQNPIEATKLLEWVIE 424
           +++V + EP+F GQTK  L +   ++ V   +                 +A  L E ++ 
Sbjct: 421 VITVRVPEPQFEGQTKEVLGTGPVRQIVSKVVERELTALLSSSKRDLKTQARALEEKIVG 480

Query: 425 RSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483
               R+  R  +E   RKTA+    LP KLADC  +    +ELFIVEGDSA G+AK AR+
Sbjct: 481 EMRARVSARLHKEITRRKTALETSSLPAKLADCRSDDVAASELFIVEGDSALGTAKNARD 540

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTD 543
              QA+LP+RGKILNV  A    +  N +   ++Q +G  +   +  E  RY KVI+MTD
Sbjct: 541 SEFQALLPIRGKILNVQKASQADMLRNVECSAIIQVVGAGSGRTFDLEAARYGKVILMTD 600

Query: 544 ADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI------TQGTKSVYAHDEEHK 597
           ADVDGAHI +LLLT F++ M  +IE   +F   PPL RI       +  + +Y + +E  
Sbjct: 601 ADVDGAHIRTLLLTLFFRYMRPMIEAGRVFAAVPPLHRIEVSGSGRRKKEIIYTYSDEEL 660

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
              L   ++ G+   E  R+KGLGEM A QL ET M+   RTL R+ +  +   + + + 
Sbjct: 661 VTTLRRLERAGRSFKEPQRYKGLGEMDAHQLAETTMEPQHRTLRRITLEDEAQVM-EAES 719

Query: 658 SINKLMGTKADERFKFIQERASFID 682
               LMG+  + R  FI E A  +D
Sbjct: 720 VFELLMGSSVEPRRDFIVEGARDVD 744


>gi|296932705|gb|ADH93506.1| DNA gyrase subunit B [Pseudomonas sp. In5]
          Length = 807

 Score =  502 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 224/571 (39%), Positives = 345/571 (60%), Gaps = 19/571 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           ++  ++ YD++SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ +
Sbjct: 2   SEENTNTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCD 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I + +  +  +TV DNGRGIPV+ H K    S  E+I+T LHAGGKFD+++Y++SGGLH
Sbjct: 62  DISIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS+EL +TV R   I+ Q +  G+P  P++   +     GT+I F+P    
Sbjct: 121 GVGVSVVNALSEELVLTVRRSGKIWEQTYIHGVPKEPMKIVGE-SETTGTQIHFKPSDLT 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++ 
Sbjct: 180 FKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G 
Sbjct: 232 LNTNKTPVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGF 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + 
Sbjct: 289 RSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEV 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451
           +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPG
Sbjct: 349 KTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQ 468

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF++++ +LIE+ 
Sbjct: 469 EVGTLITALGCGIGRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++++  PPL+++ +G +  Y  D++  ++ +
Sbjct: 529 YIYIAQPPLYKVKKGKQEQYIKDDDAMEEYM 559



 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             ++ LE        +  I R+KGLGEM   QL ET MD  +R +L+V I   +      
Sbjct: 721 EFKEALEWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPAQRRMLKVTIEDAIG----A 776

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
               N LMG   + R  FI+  A  + ++ 
Sbjct: 777 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 806


>gi|121601805|ref|YP_989593.1| DNA gyrase subunit B [Bartonella bacilliformis KC583]
 gi|120613982|gb|ABM44583.1| DNA gyrase, B subunit [Bartonella bacilliformis KC583]
          Length = 809

 Score =  502 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 235/572 (41%), Positives = 340/572 (59%), Gaps = 16/572 (2%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYA 94
                S +Y A+SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGYA
Sbjct: 5   TTSPTSGDYGAASIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYA 64

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
            L+ V+L  +G  +V DNGRGIP + HP   + S  E+I+T LHAGGKFD ++Y++SGGL
Sbjct: 65  TLVNVTLHADGSCSVCDNGRGIPTDIHP-TEHVSAAEVIMTQLHAGGKFDQNSYKVSGGL 123

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS  L + + R   I    F+ G+  +PL+   +   + GT I+F P P+
Sbjct: 124 HGVGVSVVNALSVWLRLRIKRDGKIHEMSFTHGVADAPLKVVGQCGTESGTEISFLPSPE 183

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
            F     FD   L +  +  A+L+  V            +         Y+ GGL  +++
Sbjct: 184 TFT-MVKFDFETLERRLRELAFLNSGVHILLVNQHHADVRSVE-----LYYEGGLIEFIK 237

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +++  +        +EK G    +V+ A+ W +    ++  + N I   +GGTH +G
Sbjct: 238 YIDQSKKPLIDAPIYITSEKDGI---SVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLAG 294

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR I  YAE +    K  +++  DD       ILSV + +P+F+ QTK KLVS +
Sbjct: 295 FRSALTRQINGYAESSGIAKKEKVNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSE 354

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VEN + +    +L ++P EA  L+  V+E +  R   RK RE   RK A+    LP
Sbjct: 355 VRPIVENLVNEGLSAWLEEHPNEAKILISKVVEAAAAREAARKARELTRRKGALDITSLP 414

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +E+FIVEGDSAGGSAK  R+R NQA+LPLRGKILNV  A  +++ ++
Sbjct: 415 GKLADCQERDPTKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERARFDRMLSS 474

Query: 511 QQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           + I  L+ ALG          + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE+
Sbjct: 475 EMIGTLITALGTSIGKDEFSPDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIER 534

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
            HL++  PPL+++++G  S Y  +E   +  L
Sbjct: 535 GHLYIAQPPLYKVSRGKSSQYIKNEAAFEDFL 566



 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 9/109 (8%)

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL R    ++ ++         +LE    +GK  I + R+KGLGEM A QL ET +D +
Sbjct: 709 PPLLRRKDKSERIFGPT-----SLLESIFINGKKGITLQRYKGLGEMNADQLWETTLDPD 763

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            R+LL+V+IN       D     ++LMG + + R  FIQ+ A  + ++ 
Sbjct: 764 ARSLLQVKINDAT----DADSLFSQLMGDEVEPRRIFIQKNALNVANLD 808


>gi|70733517|ref|YP_257156.1| DNA gyrase subunit B [Pseudomonas fluorescens Pf-5]
 gi|68347816|gb|AAY95422.1| DNA gyrase, B subunit [Pseudomonas fluorescens Pf-5]
          Length = 805

 Score =  502 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 224/569 (39%), Positives = 341/569 (59%), Gaps = 19/569 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S  + YD++SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I
Sbjct: 2   SEENTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            + +  +  +TV DNGRGIPV+ H K    S  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  SIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+EL +TV R   I+ Q +  G+P   ++         GT+I F+P  + F 
Sbjct: 121 GVSVVNALSEELILTVRRSGKIWEQTYVHGVPQERMKIVGD-SETTGTQIHFKPSAETFK 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++   
Sbjct: 180 NIH-FSWDVLAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G R 
Sbjct: 232 TNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 289 ALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPGKL
Sbjct: 349 AVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMISSQEV 468

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++
Sbjct: 469 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++  PPL+++ +G +  Y  D++  +  +
Sbjct: 529 YIAQPPLYKVKKGKQEQYIKDDDAMEDYM 557



 Score =  136 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             ++ L+        +  I R+KGLGEM   QL ET MD + R +L+V I   +      
Sbjct: 719 EFKEALDWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSMRRMLKVTIEDAIG----A 774

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
               N LMG   + R  FI+  A  + ++ 
Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804


>gi|332188898|ref|ZP_08390603.1| DNA gyrase, B subunit [Sphingomonas sp. S17]
 gi|332011080|gb|EGI53180.1| DNA gyrase, B subunit [Sphingomonas sp. S17]
          Length = 830

 Score =  502 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 225/582 (38%), Positives = 348/582 (59%), Gaps = 21/582 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
            A+   ++ Y ASSI++L+GL+ VR RPGMYIG TD+   LHH+  EV DNA+DE +AG+
Sbjct: 1   MADTPQTNEYGASSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEALAGH 60

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF----DNSTYE 149
            + I++ L+ +G ++V DNGRGIP   HP+    S  E+I+T LHAGGKF    D++ Y+
Sbjct: 61  CDRIDIQLNADGSVSVTDNGRGIPTGIHPE-EGVSAAEVIMTQLHAGGKFENTSDDNAYK 119

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRIT 208
           +SGGLHGVG+SVVNALS+ L +T+ R       +F+ G  ++PL+   K    ++GTR+T
Sbjct: 120 VSGGLHGVGVSVVNALSEFLDLTIWRDGEEHYMRFAHGDAVAPLKVVGKAAPGQKGTRVT 179

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F P P  F     FD  +L    +  A+L+  V+   +  +     +  P+  E Y+ GG
Sbjct: 180 FLPSPATFK-ITEFDFDKLEHRYRELAFLNSGVRLFLTDAR-----HEEPKTVELYYEGG 233

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGT-HRGTVEWAIAWCEENPEITSYCNTILTDEG 327
           +  +++    ++S +  E      ++        +EW  ++      + ++ N I   +G
Sbjct: 234 IAAFVKWLDRSKSPLFPEPIAIHGQRDAIGMDVALEWNDSY---YENVLAFTNNIPQRDG 290

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH +  R ALTR +  YA+ +    K  +++  DD+      I+SV + +P+F+ QTK 
Sbjct: 291 GTHIAAFRAALTRTLNNYADKSGLLKKEKVTLTGDDMREGLTAIVSVKLPDPKFSSQTKD 350

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-I 444
           KLVS + ++ +E+ + D    +L +NP  A  ++  +I+ +  R   ++ RE+ R+   +
Sbjct: 351 KLVSSEVRQPLESLIADKLADWLEENPQNARAIVGKIIDAAAAREAAKRARELTRRKGVM 410

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC +     +ELF+VEGDSAGGSAKQ RNR  QA+LPLRGKILN   A  
Sbjct: 411 DIASLPGKLADCQERDPAKSELFLVEGDSAGGSAKQGRNRHFQAILPLRGKILNTERARF 470

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +++ ++++I  L+QA+G          + LRY K++IMTDADVDGAHI +LLLTFFY++M
Sbjct: 471 DRMISSKEIGTLIQAMGTGIGRDDFNADKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQM 530

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605
            +LIE+ HL++  PPL++ T+G   VY  D+    + L E  
Sbjct: 531 PELIERGHLYIAQPPLYKATKGRSEVYLKDDTALDEYLVEAG 572



 Score =  130 bits (326), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           ++LE     G+  + I R+KGLGEM A QL ET +D   R++LRV      + +    + 
Sbjct: 747 QLLEAILTSGRKGLAIQRYKGLGEMNAEQLWETTLDPAVRSMLRVT----SDDVAAADEV 802

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            ++LMG   + R +FIQ+ A  + ++ 
Sbjct: 803 FSRLMGEVVEPRREFIQDNALNVANLD 829


>gi|148651822|ref|YP_001278915.1| DNA gyrase subunit B [Psychrobacter sp. PRwf-1]
 gi|148570906|gb|ABQ92965.1| DNA gyrase subunit B [Psychrobacter sp. PRwf-1]
          Length = 884

 Score =  502 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 224/584 (38%), Positives = 352/584 (60%), Gaps = 22/584 (3%)

Query: 24  KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVI 82
            +  +  D PA A     + Y + +IR+L GLE VR+RPGMYIG TD+   LHH+  EV+
Sbjct: 17  PEGVDATDLPAGAEP---EEYSSKNIRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVV 73

Query: 83  DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142
           DN++DE +AG+ + I++ +  +  ++V+DNGRGIP++ HP+    S  ++I+T LHAGGK
Sbjct: 74  DNSIDEALAGHCDQIDIIIHEDESVSVMDNGRGIPIDVHPE-EGVSAAQVIMTVLHAGGK 132

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD+++Y++SGGLHGVG+SVVNALS +L + + R+   + Q +S G+P S +++ EK    
Sbjct: 133 FDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGHHYQQTYSDGVPDSDIQELEKTNK- 191

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT+I F P P++F     FD   L K  +  ++L+  V+   + ++         ++  
Sbjct: 192 TGTQIRFYPSPEVFTGTV-FDFDILAKRLRELSFLNSGVRIVLTDER-------TDKQHV 243

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           F   GGL  ++      +  ++        ++ G     VE A+ W +    ++  + N 
Sbjct: 244 FEHKGGLSEFVAYINSGKEGLNDVFHFVSEQEDGI---VVEAALQWTDTYNEKVLCFTNN 300

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH SG R ALTR +  Y +  +   K  ++   DD       I+SV + +P+F
Sbjct: 301 IPQKDGGTHLSGFRSALTRCLNSYMDNEKLVKKEKVNTTGDDAREGLTAIVSVKVPDPKF 360

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REV 438
           + QTK KLVS + +  VE+A+ D F+ YL+++P  A  +   +I+ +  R   RK     
Sbjct: 361 SSQTKDKLVSSEVKSAVESAMHDKFNDYLLEHPGAAKSIANKIIDAARARDAARKARELT 420

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RKT +    LPGKLADC +     +EL+IVEGDSAGGSAKQ R+R  QA+LPL+GKILN
Sbjct: 421 RRKTTLDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRSRKTQAILPLKGKILN 480

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557
           V  A  +K+ ++ ++  L+ ALGC     +Y  + +RY K+IIMTDADVDG+HI +LLLT
Sbjct: 481 VERARFDKMLSSAEVGTLITALGCGIGPDEYNPDKVRYHKIIIMTDADVDGSHIRTLLLT 540

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           FF+++  +LIE+ ++++  PPL++I +G + +Y  D+E  +  L
Sbjct: 541 FFFRQTPELIERGYVYIAQPPLYKIKKGRQELYLKDDEALKAYL 584



 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
              + ++  +  +  + + R+KGLGEM A QL +T MD   R +L+V I   +       
Sbjct: 799 FDHLWQQVMQEARRGLSVQRYKGLGEMNADQLWDTTMDPENRRMLKVTIEDAI----AAD 854

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R +FI+E A  + ++ 
Sbjct: 855 HLFMCLMGDDVEPRRQFIEENALTVTNLD 883


>gi|87121026|ref|ZP_01076918.1| DNA gyrase, B subunit [Marinomonas sp. MED121]
 gi|86163864|gb|EAQ65137.1| DNA gyrase, B subunit [Marinomonas sp. MED121]
          Length = 807

 Score =  502 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 228/575 (39%), Positives = 345/575 (60%), Gaps = 16/575 (2%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
           + +NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I 
Sbjct: 2   SENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDTIN 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++  +  +TV DNGRGIPVE HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG
Sbjct: 62  VTIHPDESITVSDNGRGIPVEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+ L +T+ +   ++ Q +S G PL+P+          GT++ F+P    F +
Sbjct: 121 VSVVNALSESLTLTIRKDGKLYEQHYSHGDPLAPIAVIGDA-EANGTQVHFKPSADTFSN 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+++++    
Sbjct: 180 I-KFYYDILAKRLRELSFLNSGVAINLKDERSGQE-------ESFNYTGGLRSFVEHLNT 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ I+                 VE A+ W E     I  Y N I   +GGTH +G R A
Sbjct: 232 NKTPINQIFHFICQRDDLDDGIAVEVALQWNEGFQENIYCYTNNIPQRDGGTHLAGFRAA 291

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  + E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 292 LTRTLNAFIEKEGLGKKTKVATTGDDSREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKTA 351

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454
           VE  +      YL+++P EA  ++  +I+ +  R   R+ R+   RK A+    LPGKLA
Sbjct: 352 VEQEMSRRLSEYLLESPGEAKIIVNKMIDAARAREAARRARDLTRRKGALDIAGLPGKLA 411

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 412 DCQEKDPALSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 471

Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            L+ ALGC   R ++  E LRY  ++IMTDADVDG+HI +LLLTFF+++M ++IE+ H++
Sbjct: 472 TLITALGCGIGRDEFNVEKLRYHSIVIMTDADVDGSHIRTLLLTFFFRQMPEVIERGHIY 531

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +  PPL++I +G +  Y  DE   ++ L E    G
Sbjct: 532 IAQPPLYKIARGKQEQYLKDEAALEQHLIEVALSG 566



 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G ++ +    E  +  L    K     + I R+KGLGEM   QL ET MD + R +L
Sbjct: 710 IKRGERTQHVDTVEDMKAWL---MKEASRGMAIQRYKGLGEMNPDQLWETTMDPDARRML 766

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I+  +            LMG + + R  FIQ+ A  + ++ 
Sbjct: 767 QVSIDDAI----AADQMFTTLMGDEVEPRRNFIQDNALSVANLD 806


>gi|238023232|ref|ZP_04603658.1| hypothetical protein GCWU000324_03159 [Kingella oralis ATCC 51147]
 gi|237865615|gb|EEP66755.1| hypothetical protein GCWU000324_03159 [Kingella oralis ATCC 51147]
          Length = 801

 Score =  502 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 233/573 (40%), Positives = 339/573 (59%), Gaps = 20/573 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95
            Q  +  Y A+SI++LEGLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AGY +
Sbjct: 2   TQQTNQEYGAASIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGYCD 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V+++ +  +T+ DNGRGIP   HPK   +S  E+I+T LHAGGKFDN++Y++SGGLH
Sbjct: 62  RITVAINADESITIEDNGRGIPTGIHPK-EGRSAAEVIMTILHAGGKFDNNSYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV--RNKRGTRITFRPDP 213
           GVG+SVVNALS  L +T+ R+      +F RG  ++PL+        N+ GTR+ F    
Sbjct: 121 GVGVSVVNALSYWLKLTIWREGKEHFVEFKRGETVAPLKAIGAAQPENRHGTRVQFLASE 180

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
             FG    +    L K  +  ++L+  V+      ++        + E+F   GG++ ++
Sbjct: 181 DTFGTV-EYKFETLAKRIRELSFLNNGVRIELFDKRD-------GKHEDFAESGGVQGFV 232

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           Q    ++  + S+IF    EK G    TVE A+ W E     +  + N I   +GGTH +
Sbjct: 233 QYITGSKKPLHSKIFYALGEKDG---MTVECAMQWNESYQESVQCFTNNIPQRDGGTHLT 289

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
            LR A+TR I +Y        K  +    DD+      +LSV + +P+F+ QTK KLVS 
Sbjct: 290 ALRQAMTRTINQYIADNDIAKKAKVDTSGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSS 349

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRL 449
           +    V   L +   ++L +NP +A  +   ++E +  R   RK RE+ R+   +  L L
Sbjct: 350 EISPVVNEVLGEALKNFLEENPNDAKIICGKIVEAARAREAARKARELTRRKGVMDGLGL 409

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  E++  
Sbjct: 410 PGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFERMLA 469

Query: 510 NQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q++  L+ ALG     +    E LRY ++IIMTDADVDGAHI +LLLTFFY++M +LIE
Sbjct: 470 SQEVATLITALGTSIGKEEFNLEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELIE 529

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           + ++++  PPL++   G +  Y  DE  K + L
Sbjct: 530 RGYVYIAQPPLYKAKHGKQERYLKDEMEKDEFL 562



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 4/90 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            +  L+      +  + + R+KGLGEM   QL ET M+   R LL+V I   +       
Sbjct: 716 FEAALDSLLATAQKGLTMQRYKGLGEMNPEQLWETTMNPEVRRLLKVRIEDAI----AAD 771

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVGT 686
           ++   LMG + + R  FI+  A    ++  
Sbjct: 772 ETFVTLMGDEVEPRRAFIEANALVAQNIDA 801


>gi|322436978|ref|YP_004219190.1| DNA gyrase, B subunit [Acidobacterium sp. MP5ACTX9]
 gi|321164705|gb|ADW70410.1| DNA gyrase, B subunit [Acidobacterium sp. MP5ACTX9]
          Length = 898

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 218/606 (35%), Positives = 346/606 (57%), Gaps = 16/606 (2%)

Query: 9   FSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGG 68
            ++ P            +   P++ A  + + +  Y A +I +LEGL  VR RP MYIG 
Sbjct: 1   MASTPNTP----ANPDLTPLDPNAQANTDAAKAAGYSAENITVLEGLAAVRKRPAMYIGS 56

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE-NHPKFPNK 127
           T E+ LHHL  EV+DN++DE +AGYA+ I+V++  +  +TVVD+GRGIPV+         
Sbjct: 57  TGEQGLHHLVYEVVDNSVDEALAGYASRIDVTIHVDNSITVVDDGRGIPVDNKVINGVTM 116

Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187
             ++++LT LHAGGKFD S Y++SGGLHGVG+S VNALS+   V + R    +   ++ G
Sbjct: 117 PAVQVVLTILHAGGKFDASNYKVSGGLHGVGVSCVNALSEAFDVEIWRDGFAWEMDYAAG 176

Query: 188 IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247
            P+S L K       +GT++ F PD  IF     ++   L    +  A+L+  ++   + 
Sbjct: 177 DPISELRKMGPSTR-KGTKVHFLPDKTIFSV-TEYNYDTLANRLRQLAFLNKGIEITLTD 234

Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307
           +++   K G  + + F + GG+  +++   + ++++  +    + E+       +E A+ 
Sbjct: 235 ERQTETKTGEAKTQSFKYLGGIAEFIKLINKGKAVLHEKPIYMEAERDNV---AMEIAMQ 291

Query: 308 WCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMI 364
           + +     + ++ N I T +GGTH SG + ALTR I    +     + +  ++  DD+  
Sbjct: 292 YNDAYSETVFTFANNINTVDGGTHLSGFKTALTRTINAAGQSLGLFKDVKENLSGDDVRE 351

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
             V ++SV + +P+F GQTK KL + D   TV+  + +    +L QNP  A K++   I+
Sbjct: 352 GLVVVISVKLSQPQFEGQTKGKL-NSDIAGTVQAFVNERLGAFLEQNPQVAKKIINKAID 410

Query: 425 RSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483
            +  R   RK R+   RK A+    LPGKLADCS+      EL++VEG+SAGG+AKQ R+
Sbjct: 411 AARAREAARKARDLTRRKGALDGGGLPGKLADCSERQPDRCELYLVEGESAGGTAKQGRD 470

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMT 542
           R  QA+LPL+GKILNV  A  +K+  +++I  ++ ALGC       +   LRY K+I+MT
Sbjct: 471 RKFQAILPLKGKILNVEKARYDKMLGHEEIRAMITALGCGIGKDDFDVSKLRYGKLILMT 530

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILE 602
           DADVDG+HI +LLLTFF++ M +LI++ H+++  PPLFRI +G    Y  DE     ++ 
Sbjct: 531 DADVDGSHIRTLLLTFFFRHMTELIKRGHVYIAQPPLFRIKKGKFEQYIKDEREYVNVMV 590

Query: 603 EFKKHG 608
           +    G
Sbjct: 591 KRASDG 596



 Score =  133 bits (334), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 4/88 (4%)

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           +++ E   + G+ + ++ R+KGLGEM A QL ET MD  +RTL++V++      +  T++
Sbjct: 814 REVFEYVIEQGRKEYQVQRYKGLGEMTAPQLWETTMDPERRTLMQVKLED----IAATEE 869

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
               LMG   + R +FI+E A  + ++ 
Sbjct: 870 IFTTLMGEDVESRRRFIEENALDVKNLD 897


>gi|282889966|ref|ZP_06298501.1| hypothetical protein pah_c008o056 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500159|gb|EFB42443.1| hypothetical protein pah_c008o056 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 833

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 240/621 (38%), Positives = 342/621 (55%), Gaps = 38/621 (6%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A   YDASSI +LEGL+ VR RPGMYIG T    LH L  E +DN +DE +AGY + I V
Sbjct: 14  AQKAYDASSITVLEGLQAVRERPGMYIGDTASNGLHQLVYEAVDNCIDEAMAGYCSAIYV 73

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFP-----NKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           +L  +G  T+ DNGRGIP++ H K       + S LE+++T LHAGGKFD  TY++SGGL
Sbjct: 74  TLHKDGAATIEDNGRGIPIQKHEKESLKQGRDVSALEVVMTILHAGGKFDKDTYKVSGGL 133

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+S V ALS +L V V  Q + +  +FS+G  + PL         RGT++TF PD  
Sbjct: 134 HGVGVSCVCALSKKLVVQVYNQGSTYEMEFSKGKVVRPLSIVGTTTK-RGTKLTFIPDDT 192

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           I      FD   L K  +  A+L+  +   +  +++  +         F + GGL +++ 
Sbjct: 193 IMNV-TTFDYDILAKRLRELAFLNKGINIYFHDERDADKDD-----VNFCYSGGLLSFVS 246

Query: 275 TKLENRSLISSEIFTGKTEKKGTHR-GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
              EN+  +          ++G       E ++ W +     I SY N I T  GGTH +
Sbjct: 247 YLNENKEPLFPTPIYFHGSRQGDDGPIEFEVSMQWNDGYNENIYSYVNNIATRSGGTHLT 306

Query: 333 GLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G   ALTR +  Y +     ++       +D+      ++SV +  P+F GQTK +L + 
Sbjct: 307 GFSTALTRVLNTYIKNHGLLKSDKYSITGEDMREGLTAVISVKVANPQFEGQTKQRLGNS 366

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN-RKTAIRKLRL 449
           D    V+  + +    YL +NP  +  + +  +  ++ R   RK RE+  RK+A+   RL
Sbjct: 367 DVGSVVQQIVGEELVIYLDENPAISRSIADKAMLAAQAREAARKARELTLRKSALDSARL 426

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKL DC +      E++IVEGDSAGGSAK  R+R  QA+LP+RGKILNV  A  EK+  
Sbjct: 427 PGKLTDCQEKNPALCEIYIVEGDSAGGSAKSGRDRRFQAILPIRGKILNVEKARLEKVLG 486

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           NQ++  +V ALGC   R  +  + LRY K+IIMTDADVDG+HI +LLLTFFY+ M  L+E
Sbjct: 487 NQEVGTMVAALGCGIGRDGFNIDKLRYHKIIIMTDADVDGSHIRTLLLTFFYRHMPGLVE 546

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             ++++  PPL+R+T+   S Y H E+     + E    G   I+I             L
Sbjct: 547 NNYIYIAQPPLYRVTRKKTSRYIHSEKEMDDYMLEL---GLSDIKIK------------L 591

Query: 629 KETAMDANK-----RTLLRVE 644
           K+T +DA +     RTLL VE
Sbjct: 592 KDTELDAERMQELIRTLLEVE 612



 Score =  143 bits (361), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 42/120 (35%), Positives = 55/120 (45%), Gaps = 13/120 (10%)

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           LI   HL      L  I  G KS           +L   +++G+  IEI R+KGLGEM A
Sbjct: 726 LIADGHL------LDIIEDGGKSTPFSTLGE---VLAFIRENGRKGIEIQRYKGLGEMNA 776

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL ET MD  KRTLLRV +      +         LMG     R  FI++ A  + ++ 
Sbjct: 777 DQLWETTMDPEKRTLLRVTLPD----MVAADHMFTMLMGEAVPPRRAFIEQHALSVKNLD 832


>gi|254468460|ref|ZP_05081866.1| DNA gyrase, B subunit [beta proteobacterium KB13]
 gi|207087270|gb|EDZ64553.1| DNA gyrase, B subunit [beta proteobacterium KB13]
          Length = 797

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 233/577 (40%), Positives = 335/577 (58%), Gaps = 18/577 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANL 96
              +  Y + SI++L+GLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ + 
Sbjct: 2   TEENKAYSSDSIKVLKGLEAVRKRPGMYIGDTSDGSGLHHMVFEVLDNAIDEALAGHCDD 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVEN-HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
           I+V +  +  ++V DNGRGIP +        +S  EI++T LHAGGKFD ++Y++SGGLH
Sbjct: 62  IKVIIHPDNSVSVQDNGRGIPTDIKEDDEEKRSAAEIVMTELHAGGKFDQNSYKVSGGLH 121

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD L + V R N I   +F+RG     L+      +K GT + F P    
Sbjct: 122 GVGVSVVNALSDWLKLKVHRNNKIHEIEFARGERKESLKIIGDT-DKTGTEVQFLPSVST 180

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F D   F    L K  +  ++L+  VK      +         + E F F GG+  +++ 
Sbjct: 181 FTDIN-FHFEILAKRIRELSFLNNGVKIELIDHR-------TGKSENFAFSGGVTGFVEY 232

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
             + ++ I    F+ + EK G    TVE ++ W +   E    + N I   +GGTH +GL
Sbjct: 233 LNKTKTTIHKNPFSAEGEKDGI---TVEVSMQWNDSYGENVQCFTNNIPQRDGGTHLTGL 289

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R A+TR I  Y E      K  +    DD+      +LSV + EP+F+ QTK KLVS + 
Sbjct: 290 RGAMTRTINTYIESNDLAKKAKVDTTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSEV 349

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPG 451
           Q  V++ +      YL+++P +A  +   +++ +  R   RK      RK A+  L LPG
Sbjct: 350 QPVVQDVVAKKLTDYLLEHPADAKIICGKIVDAARAREAARKARDMTRRKGAMDSLGLPG 409

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSAKQ R+R NQA+LPL+GKILNV  A  +K+ ++Q
Sbjct: 410 KLADCQEKDPSLSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARLDKLLSSQ 469

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  L+ ALG      +  E LRY ++IIMTDADVDGAHI +LLLTFFY++M  L+E  +
Sbjct: 470 EIATLITALGTGIDKDFNLEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPQLVENGY 529

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +++  PPLF++ Q  K  Y  DE+  ++ L E    G
Sbjct: 530 VYIAQPPLFKVRQNKKEQYLKDEQELEQYLIESALDG 566



 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             ++ L+      K  + I R+KGLGEM  SQL ET MD + R LL+V+I   +      
Sbjct: 711 EFKEALDWLMSEAKSGLNIQRYKGLGEMNPSQLWETTMDPSVRRLLQVKIEDAI----SA 766

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
               + LMG + + R  FI+  A  ++++ 
Sbjct: 767 DQVFSTLMGDQVEPRRNFIESNALGVNNLD 796


>gi|167834927|ref|ZP_02461810.1| DNA gyrase subunit B [Burkholderia thailandensis MSMB43]
          Length = 822

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 237/593 (39%), Positives = 340/593 (57%), Gaps = 33/593 (5%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95
           N    ++Y ASSI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +AGY N
Sbjct: 6   NSQPENSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYCN 65

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
            I V++  +  ++V DNGRGIP +        P +S  EI++T LHAGGKFD ++Y++SG
Sbjct: 66  DIRVTIHADNSISVTDNGRGIPTDVKLNDKHEPKRSAAEIVMTELHAGGKFDQNSYKVSG 125

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKVR 200
           GLHGVG+S VNALS  L +TV R       +F RGI             +SP++      
Sbjct: 126 GLHGVGVSCVNALSSWLRLTVRRDGKKHFMEFHRGIAQNRMLEELDGEQVSPMQVIGDTE 185

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
           N RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E       
Sbjct: 186 N-RGTEVHFMADPTIFGTV-EYHYDILAKRIRELSFLNNGVRIRLTDLRSGKEDD----- 238

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
             F F GG+K +++   + +S++   IF    EK G     VE A+ W +     +  + 
Sbjct: 239 --FAFAGGVKGFVEYINKTKSVLHPTIFHVNGEKDGV---GVEVAMQWNDSYNENVLCFT 293

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + EP
Sbjct: 294 NNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLSCVLSVKVPEP 353

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F+ QTK KLVS + +  VE  +    + +L++ P +A  +   ++E +  R   RK RE
Sbjct: 354 KFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICSKIVEAARARDAARKARE 413

Query: 438 VNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
           + R+   +  + LPGKLADC +     +E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+
Sbjct: 414 MTRRKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKV 473

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLL 555
           LNV  A  +K+ +++QI+ LV ALGC         E LRY ++IIMTDADVDGAHI +LL
Sbjct: 474 LNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLEKLRYHRIIIMTDADVDGAHIRTLL 533

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           LTFFY++M ++IE+ ++++  PPL+++  G    Y  D+      +      G
Sbjct: 534 LTFFYRQMPEMIERGYVYIAQPPLYKVKAGRDERYLKDDAELNAHMLRLALQG 586



 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 4/93 (4%)

Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652
           +    ++ ++      +  +   R+KGLGEM   QL ET MD   R LLRV+I   +   
Sbjct: 733 NVSDFKEAMKWLMADAERNMSKQRYKGLGEMNPEQLWETTMDPAVRRLLRVQIEDAI--- 789

Query: 653 KDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
                    LMG + + R  FI+  A    ++ 
Sbjct: 790 -AADGIFTTLMGDEVEPRRAFIENNALRAGNID 821


>gi|297570053|ref|YP_003691397.1| DNA gyrase, B subunit [Desulfurivibrio alkaliphilus AHT2]
 gi|296925968|gb|ADH86778.1| DNA gyrase, B subunit [Desulfurivibrio alkaliphilus AHT2]
          Length = 801

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 228/570 (40%), Positives = 339/570 (59%), Gaps = 17/570 (2%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           N++ +++Y A+ I++L GLE VR RP MYIG T E+ LHHL  EV+DN++DE +AGY + 
Sbjct: 4   NETVTNDYGAAQIKVLTGLEGVRKRPAMYIGNTAEEGLHHLVYEVVDNSIDEALAGYCDR 63

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I++++  +G ++  DNGRGIPVE HP     S LE+++ TLHAGGKFD+STY++SGGLHG
Sbjct: 64  IKITIHKDGSVSSEDNGRGIPVEIHP-TEGVSALELVMCTLHAGGKFDHSTYKVSGGLHG 122

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+SVVNALS +    + R   I  Q +  G+    +E   +     GT+ITF PDP IF
Sbjct: 123 VGVSVVNALSLKTIAEIKRNGKIHRQTYRYGVKEGEVEVVGETEK-SGTKITFLPDPGIF 181

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   F    +    +  A+L+  VK     ++  AE         F+F GG+K++++  
Sbjct: 182 TETTEFKYEIIQARLRELAFLNKNVKIKIHDERTGAEDE-------FHFKGGIKSFVEYL 234

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLR 335
             NR+ + SE    +  K       VE A  + E   E    Y N I T EGG+H +G R
Sbjct: 235 NRNRTPVHSEPVFVQGGKDNVQ---VEVAFQYFEGYTERLHSYVNNIYTKEGGSHVAGFR 291

Query: 336 VALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
           +ALT+ I +YA      + +   +  DD+      I+S  +  P+F GQTKTKL + + +
Sbjct: 292 MALTKCINRYASDDIVPKNLREKLSGDDVREGITCIISTRVPSPQFEGQTKTKLGNSEVK 351

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGK 452
             V++   +    YL +NP EA K+L   +E +  R   R+ +E++RK      + +  K
Sbjct: 352 YIVDSICHEKISRYLEENPQEARKILSKAVEAARAREAARRAKELSRKKGSGMDVLMAAK 411

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LA+C        E+F+VEGDSAGGSAKQ R+R  QA+LPLRGKI+NV  A  EK+ ++++
Sbjct: 412 LAECQTKDPAKREIFLVEGDSAGGSAKQGRDRFFQAILPLRGKIMNVEKARFEKVLSSEE 471

Query: 513 IMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           I  ++ ALG     +  + + LRY K+IIMTDADVDGAHI +LLLTFFY++M  L+E  +
Sbjct: 472 IKQIIAALGTGIGKEEFDLDKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMLPLVENGN 531

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +++  PPL+R+++G K  +  D+      L
Sbjct: 532 VYIGQPPLYRLSRGKKEKFFLDDYSLNSFL 561



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 4/88 (4%)

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           +++LE  +        + R+KGLGEM   QL  T M+   R LL+V I+      +   +
Sbjct: 717 REMLESIRSESFKGSSLQRYKGLGEMNPEQLWATTMNPENRILLQVTIDD----AEGADE 772

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
               LMG K + R  FIQ  A  +  + 
Sbjct: 773 IFTTLMGDKVEPRRDFIQSNALEVSSLD 800


>gi|91774359|ref|YP_544115.1| DNA gyrase subunit B [Methylobacillus flagellatus KT]
 gi|91708346|gb|ABE48274.1| DNA gyrase subunit B [Methylobacillus flagellatus KT]
          Length = 798

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 226/568 (39%), Positives = 337/568 (59%), Gaps = 21/568 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +Y++ SI+ILEGL+ VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ + I+V++
Sbjct: 3   DYNSDSIKILEGLDAVRKRPGMYIGDTSDGSGLHHMVFEVLDNAIDEALAGHCDDIKVTI 62

Query: 102 DGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
             +  ++V DNGRGIP +        P +S  EI++T LHAGGKFD ++Y++SGGLHGVG
Sbjct: 63  HPDNSISVSDNGRGIPTDIKEDDKHEPKRSAAEIVMTELHAGGKFDQNSYKVSGGLHGVG 122

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALSD L + + R   +   +F RG+ +SPL        +RGT + F    + F +
Sbjct: 123 VSVVNALSDWLKLRIFRNGQVHQMEFRRGVAVSPLTITG-TTERRGTEVHFLASTETFTN 181

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  VK      +         + E F   GG++ +++    
Sbjct: 182 V-EFHFEILAKRIRELSFLNNGVKIELIDQR-------NGKSENFAHSGGVRGFVEYMNR 233

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVA 337
           +++++  + F    EK G     VE ++ W +   E    + N I   +GGTH +GLR A
Sbjct: 234 SKTVLHPKPFYASGEKDGII---VEVSMQWNDSYSENVLCFTNNIPQRDGGTHLTGLRTA 290

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           +TR +  Y E      K  +    DD+      +LSV + EP+F+ QTK KLVS + Q  
Sbjct: 291 MTRTLNSYIEQNDLAKKAKVDTSGDDMREGLTCVLSVKVPEPKFSSQTKDKLVSSEVQPV 350

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           V+  +      +L++NP EA  +   +I+ +  R   RK      RK A+  + LPGKLA
Sbjct: 351 VQEVVSAKLAEFLLENPNEAKIICNKIIDAARARDAARKAREMTRRKGAMDTMGLPGKLA 410

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++Q+I 
Sbjct: 411 DCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKLLSSQEIA 470

Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            L+ ALG    ++ +  E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ H++
Sbjct: 471 TLITALGTGIGKADFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMGELVERGHVY 530

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +  PPL+++ QG    Y  DE+   + L
Sbjct: 531 IAQPPLYKVKQGRDERYLKDEQELDQYL 558



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G K    +     ++ L+      K  + I R+KGLGEM   QL ET MD   R LL
Sbjct: 701 IKRGEKQQPVNS---FKEALDWLMSEAKHGLNIQRYKGLGEMNPEQLWETTMDPAVRRLL 757

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           RV+I+  +       +    LMG + + R  FI+  A  + ++ 
Sbjct: 758 RVQIDDAI----AADEIFTTLMGDQVEPRRAFIEGNALGVSNLD 797


>gi|269103823|ref|ZP_06156520.1| DNA gyrase subunit B [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268163721|gb|EEZ42217.1| DNA gyrase subunit B [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 793

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 225/563 (39%), Positives = 341/563 (60%), Gaps = 17/563 (3%)

Query: 52  LEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVV 110
           L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I V++  +G ++V 
Sbjct: 2   LKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCEDIVVTICEDGSVSVS 61

Query: 111 DNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELH 170
           D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+++ 
Sbjct: 62  DDGRGIPTELHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVE 120

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           +T+ R   I  Q +  G+P +PLE      ++ GT I F P  + F +   F    L K 
Sbjct: 121 LTIYRHGHIHRQIYRHGVPQAPLEVIGDT-DRTGTTIRFWPSSETFTNTT-FQYEILAKR 178

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  ++L+  V    + ++E        +++ F + GG++ +++    N++ I  ++F  
Sbjct: 179 LRELSFLNSGVSIKLNDERE------EGKQDHFMYEGGIQAFVEHLNRNKTPIHQKVFHF 232

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             E++     TVE A+ W +     I  + N I   +GGTH +G R ALTR +  Y E  
Sbjct: 233 NVERED--GITVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMEKE 290

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE+ + +    +
Sbjct: 291 GYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVESTMGEKLGEF 350

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
           L++NP +A  +   +I+ S  R   RK R    RK A+    LPGKLADC +     +EL
Sbjct: 351 LLENPGDAKTVCTKIIDASRAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSEL 410

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-R 525
           +IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ A+GC   R
Sbjct: 411 YIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAMGCGIGR 470

Query: 526 SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG 585
            +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ H+++  PPL+++ +G
Sbjct: 471 DEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIAQPPLYKVKKG 530

Query: 586 TKSVYAHDEEHKQKILEEFKKHG 608
            +  Y  D+E  Q+         
Sbjct: 531 KQEQYIKDDEDMQQFQTSLALEN 553



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 5/89 (5%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            +++LE   K  +  + + R+KGLGEM   QL ET MD   R ++RV IN  +       
Sbjct: 709 FKEVLEWLNKESRRGLSLQRYKGLGEMNPDQLWETTMDPESRRMMRVTINDAV----AAD 764

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           +    LMG + + R  FI+  A    ++ 
Sbjct: 765 ELFTTLMGDQVEPRRNFIEANALNA-NLD 792


>gi|126730159|ref|ZP_01745971.1| DNA gyrase subunit B [Sagittula stellata E-37]
 gi|126709539|gb|EBA08593.1| DNA gyrase subunit B [Sagittula stellata E-37]
          Length = 807

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 224/565 (39%), Positives = 327/565 (57%), Gaps = 16/565 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            Y A SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DN +DE +A +A+ + V +
Sbjct: 12  EYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAKHADYVHVKI 71

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  ++V DNGRGIP + H +    S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SV
Sbjct: 72  HADSSVSVRDNGRGIPTDIHAE-EGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSV 130

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  L + + R       KF  G     L        ++GT + F      F +   
Sbjct: 131 VNALSVWLELRIWRNGKEHYAKFEHGETSEHLRVVGDAEGEQGTEVRFLASTDTFSNL-D 189

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +D   L K  +  A+L+  V+     D+        P   E ++ GG++ +++    ++ 
Sbjct: 190 YDFHTLEKRLRELAFLNSGVRIILDDDR-----PAEPLHIELHYEGGVREFVKYLDRSKQ 244

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340
            +  +    + EK G     VE A+ W +   E    + N I   +GGTH +G R ALTR
Sbjct: 245 AVMPDPIYMEGEKDGI---GVEVAMWWNDSYHENVLPFTNNIPQRDGGTHLAGFRGALTR 301

Query: 341 GIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            ++KYA+ +   +   I+   DD       +LSV + +P+F+ QTK KLVS + +  VE+
Sbjct: 302 QLQKYAQESGIAKREKINFTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPAVES 361

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            + +    +  +NP EA ++   +IE +  R   RK RE   RKTA+       KL DCS
Sbjct: 362 LMNEKLGEWFEENPNEAKQITGKIIEAAMAREAARKARELTRRKTAMDVSFNAAKLKDCS 421

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           +  A  TELF+VEGDSAGGSA+  R+R  QA+LPLRGKILNV  A  +++  +Q+I +LV
Sbjct: 422 EKDASKTELFLVEGDSAGGSAQTGRDRRTQAILPLRGKILNVERARFDRMLGSQEIGNLV 481

Query: 518 QALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
            ALG    R ++    LRY K+IIMTDADVDGAHI +LLLTFFY++M +LIE  +L++  
Sbjct: 482 MALGTGIGRDEFNISKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQ 541

Query: 577 PPLFRITQGTKSVYAHDEEHKQKIL 601
           PPL+++ +G   VY  D+   +  L
Sbjct: 542 PPLYKVARGKSEVYLKDQTALEDYL 566



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           ++L+   + G+  + + R+KGLGEM   QL ET +D N RTLL+V I+     + +  D 
Sbjct: 724 ELLKAILEEGEKGLSLQRYKGLGEMNPDQLWETTLDPNARTLLQVTIDD----MTEADDL 779

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R  FIQ+ A  ++++ 
Sbjct: 780 FTKLMGDVVEPRRDFIQQNALSVENLD 806


>gi|71064585|ref|YP_263312.1| DNA gyrase subunit B [Psychrobacter arcticus 273-4]
 gi|71037570|gb|AAZ17878.1| DNA gyrase subunit B [Psychrobacter arcticus 273-4]
          Length = 871

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 225/607 (37%), Positives = 354/607 (58%), Gaps = 29/607 (4%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           M+D        LP   Q  +           + A   +    +Y +  IR+L GLE VR+
Sbjct: 1   MSDS-------LPTDHQQLTSDSVVET---IAAAVVPEVLPSDYSSKDIRVLRGLEAVRV 50

Query: 61  RPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119
           RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I++ +  +  ++V+DNGRG+PV+
Sbjct: 51  RPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQIDIIIHEDESVSVMDNGRGVPVD 110

Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179
            HP+    S  ++I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+   
Sbjct: 111 IHPE-EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYH 169

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
             Q ++ G+P S +++ E   ++ GT+I F P   +F     F+   L K  +  ++L+ 
Sbjct: 170 HHQTYTDGVPDSDIQQMEAT-DQTGTQIRFYPSNDVFTGTI-FEYDILAKRLRELSFLNS 227

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            V+   + ++       I ++ EF   GGL  ++      +  I+        ++ G   
Sbjct: 228 GVRIVLTDER-------IDKRHEFEHKGGLSEFVSYINAGKDGINDVFHFISNQEDGI-- 278

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
            +VE A+ W +    ++  + N I   +GGTH SG R ALTR +  Y +      K  + 
Sbjct: 279 -SVEVALQWTDTYNEKVFCFTNNIPQRDGGTHLSGFRSALTRCLNTYMDRENLFKKEKVV 337

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
              DD       I+SV + +P+F+ QTK KLVS + +  VE+A+ D F+ YL +NP    
Sbjct: 338 ATGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDYLQENPSAGK 397

Query: 417 KLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            +   +I+ +  R   RK      RKT +    LPGKLADC +     +EL+IVEGDSAG
Sbjct: 398 LIAGKIIDAARARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPALSELYIVEGDSAG 457

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLR 534
           GSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++Q++ +L+ ALGC     +Y  + +R
Sbjct: 458 GSAKQGRSRKTQAILPLKGKILNVERARFDKMLSSQEVGNLITALGCGIGPDEYNPDKVR 517

Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDE 594
           Y K+IIMTDADVDG+HI +LLLTFF+++  +LIE+ ++++  PPL+++ +G + +Y  D+
Sbjct: 518 YHKIIIMTDADVDGSHIRTLLLTFFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDD 577

Query: 595 EHKQKIL 601
           E  +  L
Sbjct: 578 EALKAYL 584



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 4/91 (4%)

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
                + ++     +  + I R+KGLGEM A QL +T MD   R +LRV I   +     
Sbjct: 784 RDFDYLWQQMMLDARRGLAIQRYKGLGEMNADQLWDTTMDPENRRMLRVNIEDAI----A 839

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
                  LMG   + R  FI+E A  + ++ 
Sbjct: 840 ADHMFTCLMGDHVEPRRIFIEENALTVSNLD 870


>gi|296134959|ref|YP_003642201.1| DNA topoisomerase (ATP-hydrolyzing) [Thiomonas intermedia K12]
 gi|295795081|gb|ADG29871.1| DNA topoisomerase (ATP-hydrolyzing) [Thiomonas intermedia K12]
          Length = 652

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 250/662 (37%), Positives = 355/662 (53%), Gaps = 44/662 (6%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y  SSIR+L+GLEPVR RPGMY   T      H+  EVIDN+ DE + GY   I V+L  
Sbjct: 9   YSESSIRVLKGLEPVRQRPGMY---TRTDNPLHIVQEVIDNSADEALGGYCQHIAVTLHT 65

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLHGVGIS 160
           +G ++V D+GRGIP   HP+  N   +E++ T LHAGGKFD      Y  SGGLHGVG+S
Sbjct: 66  DGSISVEDDGRGIPFGLHPE-ENAPVVELVFTRLHAGGKFDKLQGGAYSFSGGLHGVGVS 124

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR--GTRITFRPDPKIFGD 218
           V NAL+  L VTV R   +    F+ G  + PL  ++  R++R  GTR+   PD K F  
Sbjct: 125 VTNALAARLEVTVWRDGQVAHLVFAGGDVIEPLAVRKAARDERRSGTRVRVWPDAKYFDS 184

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
                 A L  + +SKA L   VK     +K         +   + +  GL+ YL + L 
Sbjct: 185 PH-LPLAELTHLLRSKAVLLPGVKVDLIQEK-------TGDTTHWEYARGLRDYLLSSLP 236

Query: 279 NRSLIS---SEIFTGKTEKKGTHRGT-VEWAIAWCEENPE-ITSYCNTILTDEGGTHESG 333
               I     E +   +E++    G    W + + EE      SY N I T  GGTHE+G
Sbjct: 237 AEPYIDLFEGEHYASASEQESFAEGEGAAWCVGFTEEGAVLRESYVNLIPTPAGGTHEAG 296

Query: 334 LRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           LR  L + +K + EL     + + ++ +DL   A  +LS  + +P+F GQ K KL S DA
Sbjct: 297 LREGLFQAVKGFIELHNLQPKGVKLLPEDLFARASFVLSARVLDPQFQGQIKEKLNSRDA 356

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
            R V  A+R   + +L +   +  KL E VI +++ RLR  ++ E  + + +  L  PGK
Sbjct: 357 LRLVGQAVRPTLELWLHERVDQGKKLAELVIRQAQSRLRAAQKVEKKKGSGVAVL--PGK 414

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L DC       TELF+VEGDSAGGSAK  R++  QAVLPLRGK+LN      +++  N +
Sbjct: 415 LTDCESRDTERTELFLVEGDSAGGSAKMGRDKEFQAVLPLRGKVLNSWEIERDRLFANTE 474

Query: 513 IMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           I D+  A+G     +    D   LRY K+ I++DADVDG+HI  LLLT F++    LIE+
Sbjct: 475 IHDIAVAIGVDPHGKDDAPDLSNLRYGKICILSDADVDGSHIQVLLLTLFFRHFPKLIER 534

Query: 570 KHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKIEISRFKGLG 621
            H+ +  PPL+R+    +G K    +Y  D+   Q   ++ +K G   G  +ISRFKGLG
Sbjct: 535 GHVCVARPPLYRLDAPARGKKPAQKIYVLDDAELQAAQDKLRKDGLKDGAWQISRFKGLG 594

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQERASF 680
           EM A QL +T ++ + R L RV  +         +   ++LMG  +A  R   ++E    
Sbjct: 595 EMSAEQLWDTTLNPDTRRLYRVRPDD-------AEALFHQLMGKGEAQARRGLMEEYGDQ 647

Query: 681 ID 682
           I+
Sbjct: 648 IE 649


>gi|75674203|ref|YP_316624.1| DNA gyrase subunit B [Nitrobacter winogradskyi Nb-255]
 gi|74419073|gb|ABA03272.1| DNA gyrase subunit B [Nitrobacter winogradskyi Nb-255]
          Length = 813

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 240/576 (41%), Positives = 343/576 (59%), Gaps = 14/576 (2%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAG 92
           A     A+  Y A SIR+L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG
Sbjct: 10  ADTESVAAIEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAG 69

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           +A  +EV L+ +  +TV D+GRGIPV+ H K    S  E+I+T LHAGGKFD ++Y++SG
Sbjct: 70  HATAVEVILNADNSVTVRDDGRGIPVDIH-KGEGVSAAEVIMTQLHAGGKFDQNSYKVSG 128

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS +L + + R++     +F+ G  L+PL+       +RGT +TF   
Sbjct: 129 GLHGVGVSVVNALSSKLTLRIWRRDKEHLIEFANGDALAPLKVVGDANGRRGTEVTFLAS 188

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            + F +   +D A L    +  A+L+  V    S  +   E+      E+  + GG+  +
Sbjct: 189 TETFTNI-EYDFATLEHRLRELAFLNSGVNILLSDMRHAVERR-----EQMMYEGGVVEF 242

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHE 331
           ++    N+  + ++    + E  G    +VE A+ W +   E    + N I   +GGTH 
Sbjct: 243 VKYLDRNKKAMVADPIMVRAEMNGI---SVEAALWWNDSYHENVLCFTNNIPQRDGGTHL 299

Query: 332 SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           +G R ALTR +  YA+    K  I++  DD       +LSV + +P+F+ QTK KLVS +
Sbjct: 300 AGFRGALTRQVNGYADAMAKKERIALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSE 359

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VEN + +    +  ++P EA  ++  V+E +  R   RK RE   RK A+    LP
Sbjct: 360 VRPVVENVINEALAAWFEEHPTEAKLIVGKVVEAAAAREAARKARELTRRKGALDVASLP 419

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +ELFIVEGDSAGGSAKQ RNR  QAVLPLRGKILNV  A  +K+ ++
Sbjct: 420 GKLADCQERDPAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERARFDKMLSS 479

Query: 511 QQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           +QI  L+ ALG     +  +   LRY K+I+MTDADVDGAHI +LLLTFF+++M  LIE 
Sbjct: 480 EQIGTLITALGTGIGREDFDLSKLRYHKIIVMTDADVDGAHIRTLLLTFFFRQMPALIEA 539

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605
            HL++  PPL+++T+G    Y  DE   +  L E  
Sbjct: 540 GHLYIAQPPLYKVTRGKSERYLKDERALEDYLIETG 575



 Score =  114 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 5/87 (5%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            + E     G+  + + R+KGLGEM   QL ET +D ++R+LL+V+I      + +  D 
Sbjct: 731 SLFEAVTDAGRKGVALQRYKGLGEMNPDQLWETTLDVSERSLLQVKI----KEVDEADDI 786

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R +FIQ+ +    +V 
Sbjct: 787 FTKLMGDVVEPRREFIQDNSLSA-NVD 812


>gi|84684515|ref|ZP_01012416.1| DNA gyrase subunit B [Maritimibacter alkaliphilus HTCC2654]
 gi|84667494|gb|EAQ13963.1| DNA gyrase subunit B [Rhodobacterales bacterium HTCC2654]
          Length = 805

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 225/578 (38%), Positives = 333/578 (57%), Gaps = 16/578 (2%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           +   +  Y A SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DN +DE +AG+A+
Sbjct: 4   DAQNNSEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGHAD 63

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            + V++  +  ++V DNGRGIPV  H +    S  E+I+T LHAGGKFD+++Y++SGGLH
Sbjct: 64  YVTVTVHADSSVSVYDNGRGIPVGMHAE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGGLH 122

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD L + + R       +F RG     LE       K GT + F      
Sbjct: 123 GVGVSVVNALSDWLELRIWRDGKEHIARFERGDTAKHLEVVGDANGKTGTEVRFLASTDT 182

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   +    L    +  A+L+  V+     ++        P + E ++ GG+K +++ 
Sbjct: 183 FSNL-EYSFKTLETRLRELAFLNSGVRIILKDER-----PAEPLETELHYEGGVKEFVKY 236

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
              ++  +  E      E+ G     +E A+ W +   E+   + N I   +GGTH +G 
Sbjct: 237 LDRHKQPMIEEPIFITGERDGI---GIEVAMWWNDSYNEMVLPFTNNIPQRDGGTHMAGF 293

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  YA  +    K  ++   DD       +LSV + +P+F+ QTK KLVS + 
Sbjct: 294 RGALTRTMNLYANSSGLAKKEKVAFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEV 353

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
           +  VE+ + +    +  ++P EA  ++  +IE +  R   RK RE+ RK A      LPG
Sbjct: 354 RPAVESLMNERLSDWFEEHPNEAKMIVGKIIEAALAREAARKARELTRKKATHDVASLPG 413

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +      ELFIVEGDSAGGSAKQ R+R NQAVLPLRGKILNV  A  +++  ++
Sbjct: 414 KLADCQEKDPSKRELFIVEGDSAGGSAKQGRSRHNQAVLPLRGKILNVERARFDRMLGSE 473

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
            +  L+ ALG    R ++  E LRY K++IMTDADVDGAHI +LLLTFFY++M ++I+  
Sbjct: 474 TVGTLITALGTGIGRDEFDIEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPEIIDGG 533

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +L++  PPL+++++G   VY  D    +  L +    G
Sbjct: 534 YLYIAQPPLYKVSRGRSEVYIKDVPALEDYLIQQGIEG 571



 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L+     G+  + + R+KGLGEM   QL ET +D   RTLL+V+++   ++       
Sbjct: 722 DLLQAILAEGEKGLTLQRYKGLGEMNPDQLWETTLDPEARTLLQVKVDDLADADDL---- 777

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R +FIQ+ A  ++++ 
Sbjct: 778 FTKLMGDVVEPRREFIQQNALSVENLD 804


>gi|316931400|ref|YP_004106382.1| DNA gyrase subunit B [Rhodopseudomonas palustris DX-1]
 gi|315599114|gb|ADU41649.1| DNA gyrase, B subunit [Rhodopseudomonas palustris DX-1]
          Length = 813

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 243/580 (41%), Positives = 338/580 (58%), Gaps = 14/580 (2%)

Query: 26  SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDN 84
           +       A +   A   Y A SIR+L+GL+ VR RPGMYIG TD+   LHH+  EV+DN
Sbjct: 2   TEPARQPSAESVHPAPAEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDN 61

Query: 85  AMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144
           A+DE +AG+A+ +EV L+ +G +TV D+GRGIPV+ H K    S  E+I+T LHAGGKFD
Sbjct: 62  AIDEALAGHASAVEVILNADGSVTVRDDGRGIPVDIH-KGEGISAAEVIMTQLHAGGKFD 120

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS +L + V R       +F+ G  ++PL        +RG
Sbjct: 121 QNSYKVSGGLHGVGVSVVNALSSKLILRVWRDGKEHYIEFAHGDAVAPLSVVGDAGGRRG 180

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF    + F +   +D A L    +  A+L+  V    S  +   EK      EE  
Sbjct: 181 TEVTFYASSETFTNV-EYDFATLEHRLRELAFLNSGVNILLSDLRHAVEKR-----EEMR 234

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+  +++    N+  I         +  G     VE A+ W +   E    + N I 
Sbjct: 235 YEGGVTEFVKYLDRNKKPIVPTPIVVAADLNGI---AVEAALWWNDTYHENVLCFTNNIP 291

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
             +GGTH +G R ALTR +  YA+    K  +++  DD       +LSV + +P+F+ QT
Sbjct: 292 QRDGGTHLAGFRAALTRQLTGYADNNAKKEKVALTGDDCREGLTAVLSVKVPDPKFSSQT 351

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKT 442
           K KLVS + +  VEN L +    +  ++P EA  ++  VIE +  R   RK RE   RK 
Sbjct: 352 KDKLVSSEVRPVVENVLNEALAAWFEEHPSEAKTIVGKVIEAAAAREAARKARELTRRKG 411

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR  QAVLPLRGKILNV  A
Sbjct: 412 ALDIASLPGKLADCQERDPSKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERA 471

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
             +K+ +++QI  L+ ALG    R  +    LRY K+I+MTDADVDGAHI +LLLTFF++
Sbjct: 472 RFDKMLSSEQIGTLITALGTGIGRDDFDIGKLRYHKIILMTDADVDGAHIRTLLLTFFFR 531

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +M  LIE  +L++  PPL+++T+G    Y  DE   +  L
Sbjct: 532 QMPALIEGGYLYIAQPPLYKVTRGKSEQYLKDERALEDYL 571



 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 4/79 (5%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            + E     G+  + + R+KGLGEM   QL ET +D N R+LL+V++      + +  D 
Sbjct: 731 SLFEAVTDAGRKGVALQRYKGLGEMNPGQLWETTLDTNARSLLQVKV----REVDEADDI 786

Query: 659 INKLMGTKADERFKFIQER 677
             KLMG   + R +FIQE 
Sbjct: 787 FTKLMGDVVEPRREFIQEN 805


>gi|89256995|ref|YP_514357.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp.
           holarctica LVS]
 gi|115315355|ref|YP_764078.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156503195|ref|YP_001429260.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167009376|ref|ZP_02274307.1| DNA topoisomerase IV, B subunit [Francisella tularensis subsp.
           holarctica FSC200]
 gi|290954484|ref|ZP_06559105.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312089|ref|ZP_06802902.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp.
           holarctica URFT1]
 gi|89144826|emb|CAJ80165.1| Topoisomerase IV, subunit B [Francisella tularensis subsp.
           holarctica LVS]
 gi|115130254|gb|ABI83441.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156253798|gb|ABU62304.1| DNA topoisomerase IV, B subunit [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 627

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 243/642 (37%), Positives = 357/642 (55%), Gaps = 21/642 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY+A SI +L GL+PV+ RPGMY   T+ +  +HL  E+IDN++DEV+AG+A+ I ++L
Sbjct: 2   QNYNAKSIEVLTGLDPVKKRPGMY---TNIENPNHLIQEIIDNSVDEVLAGFASKINITL 58

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  + V D+GRG+PV+ HP+    S +E+I+T LH+GGKF N  Y  SGGLHGVG+SV
Sbjct: 59  YEDNSIEVADDGRGMPVDIHPEH-KMSGIELIMTKLHSGGKFSNKNYTHSGGLHGVGVSV 117

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  L   + R   ++   F  G     LE  + V +   GT+I F P+ K F D  
Sbjct: 118 VNALSTRLEAEIKRDGNVYHIVFEDGFKTKDLEIIDNVGKKNTGTKIRFWPNKKYFDDI- 176

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
             +   L  + ++KA L   +   +S + +        EK  ++F  GLK YL  KLE  
Sbjct: 177 KVNFKALKNLLEAKAILCKALTIKYSNEIK-------KEKLTWHFETGLKGYLDHKLEAE 229

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
           +L +            ++   V +            SY N I T + GTH +GL+  +  
Sbjct: 230 TLPAEPFIIDNFSNGDSYLDAV-FCWCEDLSESIKNSYVNLIPTPQDGTHVTGLKNGIYD 288

Query: 341 GIKKYAELTQNK-RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
            IK Y E      + I I ++D       ++SV I  P+FAGQTK KL + D    V  A
Sbjct: 289 AIKAYIEKNSLSVKNIKITANDSFAQLNYVISVKITNPQFAGQTKEKLSNKDVTNFVATA 348

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
           ++D    +L QNP EA +++E + + +++R+    ++   ++     +RLPGKL DC  +
Sbjct: 349 VKDLLTIWLNQNPDEARQIVENISKVAQKRI-NADKKTTRKRIMNTTIRLPGKLTDCISS 407

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
             + TELFIVEGDSAGGSAKQAR+++ QAVLPL+GKILN     ++ I N+Q+I ++  A
Sbjct: 408 DVNSTELFIVEGDSAGGSAKQARDKNFQAVLPLKGKILNSWELDADTIMNSQEIHNIATA 467

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           +G    S      LRY K+ I+ DAD DG HIA+LL   F +    LIE  H+++  PPL
Sbjct: 468 IGVDPDSDDI-SALRYNKICILADADSDGLHIATLLCAMFLKHFRKLIENGHIYIAQPPL 526

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           FRI  G  + YA DE  +  IL +  K   GK+ I RFKGLGEM  +QL+E+AMD + R 
Sbjct: 527 FRIDIGKSTFYALDENERDTILTKNSKL-PGKVNIMRFKGLGEMNPAQLRESAMDVSSRR 585

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           LL++ I+   +  +        L   +A +R  +++      
Sbjct: 586 LLQLTISDVYDDTEMLDML---LAKKRAKDRRDWLENYGDRA 624


>gi|227496000|ref|ZP_03926311.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces urogenitalis DSM
           15434]
 gi|226834488|gb|EEH66871.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces urogenitalis DSM
           15434]
          Length = 746

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 238/739 (32%), Positives = 354/739 (47%), Gaps = 98/739 (13%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           +S +Y A  + +LEGLE VR RPGMYIG TD++ L H   E+IDN++DE + GY + I V
Sbjct: 4   SSSSYSARHLSVLEGLEAVRKRPGMYIGSTDQRGLMHCVWEIIDNSVDEALEGYGDSIAV 63

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +G + V DNGRG+PV+  P     + +E++ T LHAGGKF   +Y  +GGLHGVG 
Sbjct: 64  TVHEDGSIEVRDNGRGVPVDVEP-GSGLTGVELVYTKLHAGGKFGGGSYGAAGGLHGVGA 122

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIP----------------------LSPLEKKE 197
           SVVNALS+ + V V R    ++  F RG+P                       S L    
Sbjct: 123 SVVNALSERMDVAVDRGGKTYAMSFHRGVPGVFDDPDPAHPRPDTPFTEYTEASELRVIG 182

Query: 198 KVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
           KV+    GTR+ +  DP+IF   + +DAA L    +  ++L   +    + ++   E   
Sbjct: 183 KVKRGVSGTRVRYWADPQIFPRPSEYDAAALRARLRQTSFLVPGLSLTLTDERSAEEAAR 242

Query: 257 IPEK---------------------------------------EEFYFPGGLKTYLQTKL 277
             +                                        E F   GG + ++    
Sbjct: 243 AEKAAPSGSGAAGDDPALRASAKNATEEASDLFASQTQAPEGSEVFLAKGGTRDFVDFLA 302

Query: 278 ENRSLISSEIFTGKTE-----------------KKGTHRGTVEWAIAWCEENPEIT-SYC 319
            + S+  +   TG+                    +     +V+ A+ W      I  S+ 
Sbjct: 303 TDASVTDTFRLTGEGTYTETVQQLDKKSGHLRPVEVERTCSVDVALRWGIGYDTIERSFV 362

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQNK-----RAISIISDDLMISAVGILSVFI 374
           N I T  GGTH +G   A+T+ ++K  +          R   I  DD++     +++V +
Sbjct: 363 NIIATPMGGTHLTGFEQAVTKVLRKQIDSNARALKVTARDGKIEKDDILAGMTAVVTVRV 422

Query: 375 REPEFAGQTKTKLVSLDAQRTV----ENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
            EP+F GQTK  L +   ++ V    E  L             ++  L E V+     R+
Sbjct: 423 PEPQFEGQTKEVLGTAPVRQIVAKVVEKELTALLTSSKRDLKTQSRALQEKVVGEMRARI 482

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             R  +E   RKTA+    LP KLADC  +    +ELFIVEGDSA G+AK ARN   QA+
Sbjct: 483 SARMHKEITRRKTALETSTLPAKLADCRSDDVAASELFIVEGDSALGTAKNARNSEFQAL 542

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549
           LP+RGKILNV  A    +  N +   ++Q +G  +   +  +  RY KVI+MTDADVDGA
Sbjct: 543 LPIRGKILNVQKASQADMLRNAECSAIIQVVGAGSGRTFDLDSARYGKVILMTDADVDGA 602

Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI------TQGTKSVYAHDEEHKQKILEE 603
           HI +LLLT F++ M  +IE   ++   PPL RI       +  + +Y + ++   + L +
Sbjct: 603 HIRTLLLTLFFRYMRPMIEAGRVYAAVPPLHRIEVSAQGRRKKEVIYTYSDDELVRTLRK 662

Query: 604 FKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLM 663
            +K G+   E  R+KGLGEM A QL ET M+   RTL R+ +  +   L + ++    LM
Sbjct: 663 LEKQGRSFKEPQRYKGLGEMDAHQLAETTMEPEHRTLRRITLGDEAELL-EAENVFELLM 721

Query: 664 GTKADERFKFIQERASFID 682
           G+  + R  FI E A  ID
Sbjct: 722 GSSVEPRRDFIVEGAQDID 740


>gi|227823871|ref|YP_002827844.1| DNA gyrase subunit B [Sinorhizobium fredii NGR234]
 gi|227342873|gb|ACP27091.1| DNA gyrase, subunit B [Sinorhizobium fredii NGR234]
          Length = 811

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 236/574 (41%), Positives = 343/574 (59%), Gaps = 16/574 (2%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAG 92
           +     A   Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG
Sbjct: 5   SETEAGAIAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAG 64

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           +A+++ V+L+ +G  TV DNGRGIP + H +    S  E+I+T LHAGGKFD ++Y++SG
Sbjct: 65  HADIVTVTLNPDGSCTVTDNGRGIPTDIHRE-EGVSAAEVIMTQLHAGGKFDQNSYKVSG 123

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS  L + + R   +    F+ G+   PL       ++ GT +TF P 
Sbjct: 124 GLHGVGVSVVNALSVSLKLKIRRAGKVHEMSFTHGVADGPLTVTGDAGSETGTEVTFLPS 183

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            + F     FD A L    +  A+L+  V+   +  +    +          + GGL+ +
Sbjct: 184 EQTFSKT-EFDFATLEHRLRELAFLNSGVRIVLTDKRHSDIRRDE-----MMYDGGLEAF 237

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHE 331
           +      +  +  +  + + EK G    TVE A+ W +   E    + N I   +GGTH 
Sbjct: 238 VAYLDRAKKPLVHKPVSIRGEKDGI---TVEVAMWWNDSYHENVLCFTNNIPQRDGGTHM 294

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G R ALTR I  YA+ +    K  +S+  DD       +LSV + +P+F+ QTK KLVS
Sbjct: 295 AGFRGALTRQITSYADTSGITKKEKVSLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVS 354

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448
            + +  VE+ + +  + +L +NP +A  L+  V+E +  R   RK RE   RK A+    
Sbjct: 355 SEVRPVVESLVNEALNVWLEENPSDAKILVGKVVEAAAAREAARKARELTRRKGALDISS 414

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS+     +E+F+VEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  +K+ 
Sbjct: 415 LPGKLADCSERDPAKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 474

Query: 509 NNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
           ++Q+I  L+ ALG          + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LI
Sbjct: 475 SSQEIGTLITALGTSIGKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELI 534

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           E+ HL++  PPL+++T+G  + Y  DE+  +  L
Sbjct: 535 ERGHLYIAQPPLYKVTRGKSAQYLKDEKALEDYL 568



 Score =  133 bits (334), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 10/114 (8%)

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           ++   PP+ R   GT  +        + +L+     G+  + + R+KGLGEM A QL ET
Sbjct: 707 VYAA-PPVLRRRDGTHEISG-----PRALLDAIFAAGRKGLTMQRYKGLGEMNAEQLWET 760

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +D N R+LL+V+++       D     ++LMG + + R  FIQE A  + ++ 
Sbjct: 761 TLDPNVRSLLQVKVSDAT----DADGLFSRLMGDEVEPRRDFIQENALSVANLD 810


>gi|85710072|ref|ZP_01041137.1| type IIA topoisomerase B subunit [Erythrobacter sp. NAP1]
 gi|85688782|gb|EAQ28786.1| type IIA topoisomerase B subunit [Erythrobacter sp. NAP1]
          Length = 848

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 220/602 (36%), Positives = 353/602 (58%), Gaps = 27/602 (4%)

Query: 26  SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDN 84
           +     + A  N+    +Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV DN
Sbjct: 4   NTPENGAGAPKNEKMKGDYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDN 63

Query: 85  AMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF- 143
           A+DE +AG+ +L+ + L+ +G ++V DNGRGIPV+ H K    S  E+I+T LHAGGKF 
Sbjct: 64  AIDEALAGHCDLVLIELNPDGSVSVEDNGRGIPVDMH-KEEGVSAAEVIMTQLHAGGKFE 122

Query: 144 ---DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
              D++ Y++SGGLHGVG+SVVNALS+ L + + R       +F  G  ++ LE K    
Sbjct: 123 NTSDDNAYKVSGGLHGVGVSVVNALSEWLELVIWRNGQEHWMRFEHGDAVNSLEIKGDAP 182

Query: 201 N----------KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
                      K+GTR+TF+     F +   FD  +L    +  A+L+  V+      + 
Sbjct: 183 KVEQNPDDNGYKKGTRVTFKASTDTFKNVTEFDFEKLEHRYRELAFLNSGVRILIRDLR- 241

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT-HRGTVEWAIAWC 309
               +  P + + ++ GG+  +++    N+  +  +  +   EK G      +EW  ++ 
Sbjct: 242 ----HEEPIEHDLFYEGGIAAFVKWLDRNKEALIEDPISVSAEKDGIGIDVALEWNDSY- 296

Query: 310 EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH +  R ALT  +  YAE +    K  +S+  +D+     
Sbjct: 297 --YENVLCFTNNIPQRDGGTHLAAFRAALTSTLNNYAERSGLLSKAKVSLSGEDMREGLT 354

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            I+SV + +P+F+ QTK KLVS + ++ +++ + +  + +L +NP +A  +++ +++ + 
Sbjct: 355 AIVSVKLPDPKFSSQTKDKLVSSEVRQPLQSLMGEKMNEWLEENPGDAKAIIQKIVDAAA 414

Query: 428 ERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
            R   ++ RE++RK A+    LPGKL+DC +  A   ELF+VEGDSAGGSAK  R+   Q
Sbjct: 415 AREAAKRAREMSRKGAMSVASLPGKLSDCRERDATKAELFLVEGDSAGGSAKGGRDSQYQ 474

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVD 547
           A+LPLRGKILNV  A  ++I +++++  L+QA+G   R ++  E LRY K++IMTDADVD
Sbjct: 475 AILPLRGKILNVERARFDRIISSREVGTLIQAMGTGIRDEFDLEKLRYHKIVIMTDADVD 534

Query: 548 GAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607
           GAHI +LLLTFF+++M ++++  HLF+  PPLF++ +G   VY  D+    + L +    
Sbjct: 535 GAHIRTLLLTFFHRQMPEIVKAGHLFIAQPPLFKVAKGKSEVYVKDQAALDRYLVDAGLQ 594

Query: 608 GK 609
           G+
Sbjct: 595 GR 596



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           ++L+     G+  + ISR+KGLGEM   QL ET +D   R LL+V++         T + 
Sbjct: 765 QLLDTVLAAGRKGLSISRYKGLGEMNPEQLWETTLDPENRILLQVKVED----ADVTDEI 820

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             +LMG   + R +FIQ+ A  + ++ 
Sbjct: 821 FTRLMGDVVEPRREFIQDNALNVANLD 847


>gi|320108482|ref|YP_004184072.1| DNA gyrase subunit B [Terriglobus saanensis SP1PR4]
 gi|319927003|gb|ADV84078.1| DNA gyrase, B subunit [Terriglobus saanensis SP1PR4]
          Length = 877

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 224/603 (37%), Positives = 350/603 (58%), Gaps = 21/603 (3%)

Query: 28  EIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMD 87
               + A      +  Y + +I+ILEGLE VR+RP MYIG T E+ LHHL  EV+DN++D
Sbjct: 13  SGTATEAAPQSVQTTTYTSDNIKILEGLEAVRLRPAMYIGSTGEQGLHHLVYEVVDNSVD 72

Query: 88  EVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN--HPKFPNKSTLEIILTTLHAGGKFDN 145
           E +AG+A  I+V++  +  +TVVD+GRGIPV+    P     + +E++LT LHAGGKFD 
Sbjct: 73  EALAGHATRIDVTIHVDNSVTVVDDGRGIPVDMKTLPDGSKMAAVEVVLTKLHAGGKFDA 132

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           S+Y++SGGLHGVG+S VNALS+E  V + R    + Q +S+G PL  + +   V  KRGT
Sbjct: 133 SSYKVSGGLHGVGVSCVNALSEEFDVEIWRDGHTYQQNYSKGDPLEAVREVG-VSKKRGT 191

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           ++ F PD  IF     ++   L    +  A+L+  ++   + ++ I  K    +  +F +
Sbjct: 192 KVHFLPDRSIFTV-HEYNYDTLANRLRQLAFLNKGIEITLTDERSIDAKG-EAKHNDFKY 249

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG+  +++   + ++++  +    + E+    +  +E A+ + +     + S+ N I T
Sbjct: 250 NGGIAEFIKHLNKGKAVLHEKPIYMEAER---GQLVMEIALQYNDAYSETVFSFANNINT 306

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH SG R +LTR I    +     + +      DD+    V ++SV + +P+F GQ
Sbjct: 307 VDGGTHLSGFRTSLTRTINAAGQSMGLFKDLKESLSGDDVREGLVAVVSVKLPQPQFEGQ 366

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TK KL + D    V++ + +    +  QNP  A K++   I+ +  R   RK R+   RK
Sbjct: 367 TKGKL-NSDISGQVQSFVNERLGVFFEQNPQVAKKIINKAIDAARAREAARKARDLTRRK 425

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            A+    LPGKLADCS+      EL++VEG+SAGG+AKQ R+R  QA+LPL+GKILNV  
Sbjct: 426 GALDGGGLPGKLADCSERQPDRCELYLVEGESAGGTAKQGRDRRFQAILPLKGKILNVEK 485

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +K+  +++I  ++ ALG        +   LRY K+I+MTDADVDG+HI +LLLTFF+
Sbjct: 486 ARYDKMLGHEEIRAMITALGTGIGKDDFDLAKLRYGKLILMTDADVDGSHIRTLLLTFFF 545

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           + M +LI++ H+++  PPLF+I +G +  Y  DE    K++ +    G     I R+   
Sbjct: 546 RHMGELIKRGHVYIAQPPLFKIKKGKREEYIKDEREFVKVMVKRASDGM----IVRY--- 598

Query: 621 GEM 623
           GE 
Sbjct: 599 GES 601



 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 4/88 (4%)

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           +++ +   + GK + ++ R+KGLGEM A QL ET MD  +RTL+ V++      +  T++
Sbjct: 793 RELFDYVIEQGKKEYQVQRYKGLGEMTAEQLWETTMDPARRTLVIVKLED----IAATEE 848

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
               LMG   + R KFI+E A  + ++ 
Sbjct: 849 IFTTLMGEDVEARRKFIEENALDVKNLD 876


>gi|254369845|ref|ZP_04985855.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122804|gb|EDO66933.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 627

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 244/642 (38%), Positives = 357/642 (55%), Gaps = 21/642 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY+A SI +L GL+PV+ RPGMY   T+ +  +HL  E+IDN++DEV+AG+A+ I ++L
Sbjct: 2   QNYNAKSIEVLTGLDPVKKRPGMY---TNIENPNHLIQEIIDNSVDEVLAGFASKINITL 58

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  + V D+GRG+PV+ HP+    S +E+I+T LH+GGKF N  Y  SGGLHGVG+SV
Sbjct: 59  YEDNSIEVADDGRGMPVDIHPEH-KMSGIELIMTKLHSGGKFSNKNYTHSGGLHGVGVSV 117

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  L   + R   ++   F  G     LE  + V +   GT+I F P+ K F D  
Sbjct: 118 VNALSTRLEAEIKRDGNVYHIVFEDGFKTKDLEIIDNVGKKNTGTKIRFWPNKKYFDDI- 176

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
             +   L  + ++KA L   +   +S + +        EK  +YF  GLK YL  KLE  
Sbjct: 177 KVNFKALKNLLEAKAILCKALTIKYSNEIK-------KEKLTWYFETGLKGYLDHKLEAE 229

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
           +L +            ++   V +            SY N I T + GTH +GL+  +  
Sbjct: 230 TLPAEPFMIDNFSNGDSYLDAV-FCWCEDLSESIKNSYVNLIPTPQDGTHVTGLKNGIYD 288

Query: 341 GIKKYAELTQNK-RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
            IK Y E      + I I ++D       ++SV I  P+FAGQTK KL + D    V  A
Sbjct: 289 AIKAYIEKNSLSVKNIKITANDSFAQLNYVISVKITNPQFAGQTKEKLSNKDVTNFVATA 348

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
           ++D    +L QNP EA +++E + + +++R+    ++   ++     +RLPGKL DC  +
Sbjct: 349 VKDLLTIWLNQNPDEARQIVENISKVAQKRI-NADKKTTRKRIMNTTIRLPGKLTDCISS 407

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
             + TELFIVEGDSAGGSAKQAR+++ QAVLPL+GKILN     ++ I N+Q+I ++  A
Sbjct: 408 DVNSTELFIVEGDSAGGSAKQARDKNFQAVLPLKGKILNSWELDADTIMNSQEIHNIATA 467

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           +G    S      LRY K+ I+ DAD DG HIA+LL   F +    LIE  H+++  PPL
Sbjct: 468 IGVDPDSDDI-SALRYNKICILADADSDGLHIATLLCAMFLKHFRKLIENGHIYIAQPPL 526

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           FRI  G  + YA DE  +  IL +  K   GK+ I RFKGLGEM  +QL+E+AMD + R 
Sbjct: 527 FRIDIGKSTFYALDENERDTILTKNSKL-PGKVNIMRFKGLGEMNPAQLRESAMDVSSRR 585

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           LL++ I+   +  +        L   +A +R  +++      
Sbjct: 586 LLQLTISDVYDDTEMLDML---LAKKRAKDRRDWLENYGDRA 624


>gi|187931098|ref|YP_001891082.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712007|gb|ACD30304.1| DNA topoisomerase IV, B subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 627

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 241/642 (37%), Positives = 357/642 (55%), Gaps = 21/642 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY+A SI +L GL+PV+ RPGMY   T+ +  +HL  E+IDN++DEV+AG+A+ I ++L
Sbjct: 2   QNYNAKSIEVLTGLDPVKKRPGMY---TNTENPNHLIQEIIDNSVDEVLAGFASKINITL 58

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  + V D+GRG+PV+ HP+    S +E+I+T LH+GGKF N  Y  SGGLHGVG+SV
Sbjct: 59  YEDNSIEVADDGRGMPVDIHPEH-KMSGIELIMTKLHSGGKFSNKNYTHSGGLHGVGVSV 117

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  L   + R   ++   F  G     LE  + V +   GT+I F P+ K F D  
Sbjct: 118 VNALSTRLEAEIKRDGNVYHIVFEDGFKTKDLEIIDNVGKKNTGTKIRFWPNKKYFDDI- 176

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
             +   L  + ++KA L   +   +S + +        EK  ++F  GLK YL  KLE  
Sbjct: 177 KVNFKALKNLLEAKAILCKALTIKYSNEIK-------KEKLTWHFETGLKGYLDHKLEAE 229

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
           +L +            ++   V +            SY N I T + GTH +GL+  +  
Sbjct: 230 TLPAEPFMIDNFSNGDSYLDAV-FCWCEDPSESIKNSYVNLIPTPQDGTHVTGLKNGIYD 288

Query: 341 GIKKYAELTQNK-RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
            IK Y E      + I I ++D       ++SV I  P+FAGQTK KL + D    V  A
Sbjct: 289 AIKAYIEKNSLSVKNIKITANDSFAQLNYVISVKITNPQFAGQTKEKLSNKDVTNFVATA 348

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
           ++D    +L QNP EA +++E + + +++R+    ++   ++     +RLPGKL DC  +
Sbjct: 349 VKDLLTIWLNQNPDEARQIVENISKVAQKRI-NADKKTTRKRIMNTTIRLPGKLTDCISS 407

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
             + TELFIVEGDSAGGSAKQAR+++ QAVLPL+GKILN     ++ I N+Q+I ++  A
Sbjct: 408 DVNSTELFIVEGDSAGGSAKQARDKNFQAVLPLKGKILNSWELDADTIMNSQEIHNIATA 467

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           +G    +      LRY K+ I+ DAD DG HIA+L+   F +    LIE  H+++  PPL
Sbjct: 468 IGVDPDNDDI-SALRYNKICILADADSDGLHIATLICAMFLKHFRKLIENGHIYIAQPPL 526

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           FRI  G  + YA DE  +  IL +  K   GK+ I RFKGLGEM  +QL+E+AMD + R 
Sbjct: 527 FRIDIGKSTFYALDENERDTILTKNSKL-PGKVNIMRFKGLGEMNPAQLRESAMDVSSRR 585

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           LL++ I+   +  +        L   +A +R  +++      
Sbjct: 586 LLQLTISDVYDDTEMLDML---LAKKRAKDRRDWLENYGDRA 624


>gi|260574430|ref|ZP_05842434.1| DNA gyrase, B subunit [Rhodobacter sp. SW2]
 gi|259023326|gb|EEW26618.1| DNA gyrase, B subunit [Rhodobacter sp. SW2]
          Length = 805

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 228/580 (39%), Positives = 334/580 (57%), Gaps = 16/580 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
                 +  YDA SI++L GLE VR RPGMYIG TD+   LHH+  EV+DN +DE +AG+
Sbjct: 2   SEAAKTTPTYDADSIKVLRGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGH 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A  + V +  +G ++V DNGRGIPV+ H +    S  E+I+T LHAGGKFD ++Y++SGG
Sbjct: 62  ATAVSVKIHADGSVSVRDNGRGIPVDIHAE-EGVSAAEVIMTQLHAGGKFDQNSYKVSGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS+ L + V R    +  KF  G  +  L        ++GT + F    
Sbjct: 121 LHGVGVSVVNALSEWLELRVWRNGKEYFAKFVHGDTVEHLRIVGDAPGQKGTEVRFLASL 180

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           + F +   +    L    +  A+L+  VK     ++        P K E  + GG++ ++
Sbjct: 181 QTFSNL-DYVFKTLENRLRELAFLNSGVKIVLEDER-----PAEPLKTELMYEGGVREFV 234

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +    ++S I ++      E+ G    TVE A+ W +     +  + N I   +GGTH +
Sbjct: 235 RYLDRSKSSIMADPIYIIGERAGI---TVEVAMWWNDSYHETVLPFTNNIPQRDGGTHLA 291

Query: 333 GLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR I  YA+ +   +        DD       +LSV + +P+F+ QTK KLVS 
Sbjct: 292 GFRGALTRTINNYAQSSGIAKREKIDFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 351

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           + +  VEN + +    +  +NP  A  ++  +IE +  R   RK R+   RKTA+    L
Sbjct: 352 EVRPAVENLVNEKLAEWFEENPANAKIIVGKIIEAALAREAARKARDLTRRKTALDVASL 411

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +ELF+VEGDSAGGSAKQ R+R+NQAVLPL+GKILNV  A  +++  
Sbjct: 412 PGKLADCQERDPAKSELFLVEGDSAGGSAKQGRSRANQAVLPLKGKILNVERARFDRMLA 471

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q+I  L+ ALG    R ++    LRY K++IMTDADVDGAHI +LLLTFF+++M  +IE
Sbjct: 472 SQEIGTLITALGTGIGRDEFNIAKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQMPQVIE 531

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             +L++  PPL+++ +G   VY  D+   +  L +    G
Sbjct: 532 GGYLYIAQPPLYKVARGKSEVYLKDQAALEDYLVQMGVDG 571



 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 4/88 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           ++L+     G+  + + R+KGLGEM   QL ET +D   RTLL+V+++     L +  D 
Sbjct: 722 ELLKAILAEGEKGLTLQRYKGLGEMNPEQLWETTLDPEARTLLQVKVDD----LAEADDI 777

Query: 659 INKLMGTKADERFKFIQERASFIDDVGT 686
             KLMG   + R +FIQ+ A  ++++ T
Sbjct: 778 FTKLMGDVVEPRREFIQQNALNVENLDT 805


>gi|326773489|ref|ZP_08232772.1| DNA gyrase, B subunit [Actinomyces viscosus C505]
 gi|326636719|gb|EGE37622.1| DNA gyrase, B subunit [Actinomyces viscosus C505]
          Length = 750

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 230/745 (30%), Positives = 346/745 (46%), Gaps = 97/745 (13%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
           P+  N+++  +Y A  + +LEGLE VR RPGMYIG TD++ L H   E++DNA+DE + G
Sbjct: 2   PSSENKTSRGDYSARHLSVLEGLEAVRKRPGMYIGSTDQRGLMHCVWEIVDNAVDEALEG 61

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           + + I V++  +G + V DNGRG+PV+  P     + +E++ T LHAGGKF   +Y  +G
Sbjct: 62  HGDDISVTVHDDGSIEVRDNGRGVPVDIEP-SSGLTGVELVYTKLHAGGKFGGGSYGAAG 120

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------------- 199
           GLHGVG SVVNAL++ + V V R    ++  F RG P    +   +              
Sbjct: 121 GLHGVGASVVNALAERMDVEVDRGGKTYAMSFHRGEPGIFDDSAGRSPSSPFTGFTKASE 180

Query: 200 --------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-- 249
                   R   GTR+ +  DP+IF     +DAA L    +  ++L   +       +  
Sbjct: 181 LRVIGKVRRGVTGTRVRYWADPQIFPKPTEYDAAALRARLRQTSFLVPGLTLRLEDKRPE 240

Query: 250 --------------------------------------EIAEKYGIPEKEEFYFPGGLKT 271
                                                 ++ +       E F   GG   
Sbjct: 241 AEAIAASTTPAADAGETDDAVHEVTLRAAAKNATENRGDLFDTGDDDGVEVFQALGGTAD 300

Query: 272 YLQTKLENRSLISSEIFTGKTE-----------------KKGTHRGTVEWAIAWCEENPE 314
           ++     + S+  +   TG+                    +      V+ A+ W      
Sbjct: 301 FVDFLASDGSVTDTFRLTGEGTYTETVQQLDRASGHLRPVEVERTCMVDVALRWGIGYDT 360

Query: 315 IT-SYCNTILTDEGGTHESGLRVALTRGIKKYAEL-----TQNKRAISIISDDLMISAVG 368
              S+ N I T  GGTH +G   ALT+ ++K  E          +   +  DD+M     
Sbjct: 361 TERSFVNIIATPMGGTHLTGFEQALTKVLRKRIEADSRALKLTAKDGRVEKDDIMAGLTA 420

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD----HYLVQNPIEATKLLEWVIE 424
           +++V + EP+F GQTK  L +   ++ V   +                 +A  L E ++ 
Sbjct: 421 VITVRVPEPQFEGQTKEVLGTGPVRQIVSKVVERELTALLTSSKRDLKTQARALEEKIVG 480

Query: 425 RSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483
               R+  R  +E   RKTA+    LP KLADC  +    +ELFIVEGDSA G+AK AR+
Sbjct: 481 EMRARVSARLHKEITRRKTALETSSLPAKLADCRSDDVAASELFIVEGDSALGTAKNARD 540

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTD 543
              QA+LP+RGKILNV  A    +  N +   ++Q +G  +   +  E  RY KVI+MTD
Sbjct: 541 SEFQALLPIRGKILNVQKASQADMLRNVECSAIIQVVGAGSGRTFDLEAARYGKVILMTD 600

Query: 544 ADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI------TQGTKSVYAHDEEHK 597
           ADVDGAHI +LLLT F++ M  +IE   +F   PPL RI       +  + +Y + +E  
Sbjct: 601 ADVDGAHIRTLLLTLFFRYMRPMIEAGRVFAAVPPLHRIEVSGSGRRKKEIIYTYSDEEL 660

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
              L   ++ G+   E  R+KGLGEM A QL ET M+   RTL R+ +  +   + + + 
Sbjct: 661 VSALRRLERAGRSFKEPQRYKGLGEMDAHQLAETTMEPQHRTLRRITLGDEAQIM-EAES 719

Query: 658 SINKLMGTKADERFKFIQERASFID 682
               LMG+  + R  FI E A  +D
Sbjct: 720 VFELLMGSSVEPRRDFIVEGARDVD 744


>gi|229820414|ref|YP_002881940.1| DNA topoisomerase (ATP-hydrolyzing) [Beutenbergia cavernae DSM
           12333]
 gi|229566327|gb|ACQ80178.1| DNA topoisomerase (ATP-hydrolyzing) [Beutenbergia cavernae DSM
           12333]
          Length = 708

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 230/707 (32%), Positives = 343/707 (48%), Gaps = 64/707 (9%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
               +    Y A  + +LEGLE VR RPGMYIG TD + L H   E+IDN++DE + G+ 
Sbjct: 1   MTTAAPESTYTARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCVWEIIDNSVDEALGGHG 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             I++ L  +  + V D+GRGIPV+   +    S +E++ T LHAGGKF  S+Y  SGGL
Sbjct: 61  EAIDIVLHPDSSVEVRDSGRGIPVDTVERL-GLSGVEVVFTKLHAGGKFGGSSYGSSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV--------------- 199
           HGVG SVVNALS  L V V R    +   F RG P +  +                    
Sbjct: 120 HGVGASVVNALSARLDVEVDRAGKTYRMTFRRGEPGTFDDGAVPSPEAPFAPFTDHSELA 179

Query: 200 ------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
                 R + GTR+ +  D +IF   A F    LL   +  A+L   +      ++ +  
Sbjct: 180 VVAKVPRGRTGTRVRYWADRQIFPVSAAFAYDELLTRARQTAFLVPGLSITVRDERRLPG 239

Query: 254 KYGIP--EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KK 295
             G     +E F + GG++ +      + S+  + +  G                   ++
Sbjct: 240 TPGEGGVVEEVFRYDGGVRDFADYLSPDASVTDTWLLRGSDTFTESIQALDDAGHLRAQE 299

Query: 296 GTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELT----- 349
                 V+ A+ W         S+ N I T +GG+H +G    L + ++K  E+      
Sbjct: 300 VERTCEVDVALRWGIGYETEVRSFVNIIATPKGGSHLAGFEQGLLKTVRKQVEVNARRLK 359

Query: 350 --QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RTVENALRDP 403
                    I  DD+M     +++V + EP+F GQTK  L +   +    R VE  L   
Sbjct: 360 LTGKNGKERIEKDDVMAGLTAVVTVRLPEPQFEGQTKEVLGTAPVRAIVARVVERELTAL 419

Query: 404 FDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK-TAIRKLRLPGKLADCSQNIAH 462
                     +A  +L+ V++    R+  R  +E++R+  A+    LP KLADC  +   
Sbjct: 420 LTSTKRGEKTQAAAVLDKVVDEMRARVAARTHKEISRRKNALETSSLPAKLADCRSDDVD 479

Query: 463 GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
            +ELFIVEGDSA G+AK AR+   QA+LP+RGKILNV  A    +  N +   ++Q LG 
Sbjct: 480 RSELFIVEGDSALGTAKLARDSDFQALLPIRGKILNVQKASLADMLKNLECAAIIQVLGA 539

Query: 523 RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI 582
            +   +  E  RY +V++MTDADVDGAHI +LLLT F++ M  L+E   +F   PPL R+
Sbjct: 540 GSGRTFELEAARYGRVVLMTDADVDGAHIRTLLLTLFFRYMRPLVEAGRVFAAVPPLHRV 599

Query: 583 T------QGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDA 635
                  +  + VY + E   +++L + +K G+  K  I R+KGLGEM A QL ET MD 
Sbjct: 600 EISGSGGRKPEVVYTYSESELRQLLAKLEKSGRRYKQPIQRYKGLGEMDAHQLAETTMDP 659

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
             RTL ++ ++     L+  +     LMG     R  F+   A+ +D
Sbjct: 660 AHRTLRKIRLSD----LERAEQVFELLMGNDVAPRKDFLVAGAAELD 702


>gi|159184123|ref|NP_353052.2| DNA gyrase subunit B [Agrobacterium tumefaciens str. C58]
 gi|159139460|gb|AAK85837.2| DNA gyrase subunit B [Agrobacterium tumefaciens str. C58]
          Length = 811

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 228/575 (39%), Positives = 337/575 (58%), Gaps = 16/575 (2%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIA 91
            + +   A+  Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +A
Sbjct: 4   TSSSEVGANAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALA 63

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+A+L+ V+L+ +G +TV DNGRGIP + H      S  E+I+T LHAGGKFD ++Y++S
Sbjct: 64  GHADLVTVTLNADGSVTVTDNGRGIPTDIHS-SEGVSAAEVIMTQLHAGGKFDQNSYKVS 122

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS  L + + R   +    F+ G+  +PL    +   + GT +TF  
Sbjct: 123 GGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGRSGTEVTFLA 182

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
            P+ F     +D   L    +  A+L+  V+   +  +    K          + GGL+ 
Sbjct: 183 SPQTFT-MTDYDYGTLEHRLRELAFLNSGVRILLTDKRHSDVKQQE-----LLYDGGLEA 236

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTH 330
           +++     +  +  +     +EK G    TVE A+ W +   E    + N I   +GGTH
Sbjct: 237 FVRYLDRAKKPLVDKPIAIHSEKDGI---TVEVALWWNDSYHENVLCFTNNIPQRDGGTH 293

Query: 331 ESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  YA+ +   +   +    +D       ILSV + +P+F+ QTK KLV
Sbjct: 294 MAGFRAALTRQVTSYADTSGIMKREKVSLQGEDCREGLTAILSVKVPDPKFSSQTKDKLV 353

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE+ + +    +L ++P EA  L+ + V         R+ +    RK A+   
Sbjct: 354 SSEVRPVVESLVNEALSTWLEEHPSEAKILIGKVVEAAVAREAARKARELTRRKGALDIA 413

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADCS+     +ELF+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +K+
Sbjct: 414 SLPGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFDKM 473

Query: 508 RNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
            ++Q+I  L+ ALG          + LRY K+IIMTDADVDGAHI +LLLTFF+++M +L
Sbjct: 474 LSSQEIGTLITALGTSIGKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPEL 533

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           IE+ HL++  PPL+++T+G    Y  DE+  ++ L
Sbjct: 534 IERGHLYIAQPPLYKVTRGKSVQYLKDEKALEEYL 568



 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 13/139 (9%)

Query: 551 IASLLLTFF----YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKK 606
           I++L +        + +  L+ +      +PP+ +   G+  +        + +L+    
Sbjct: 681 ISTLDMGLLGSADARHIDQLVARTRDIYATPPVLQRKDGSMEL-----AGPRALLDAIFA 735

Query: 607 HGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK 666
            G+  + + R+KGLGEM A QL ET +DAN R+LL+V +N       D      +LMG +
Sbjct: 736 AGRKGLSMQRYKGLGEMNAEQLWETTLDANVRSLLQVRVNDAT----DADGLFARLMGDE 791

Query: 667 ADERFKFIQERASFIDDVG 685
            + R  FIQE A  + ++ 
Sbjct: 792 VEPRRDFIQENALNVANLD 810


>gi|134294131|ref|YP_001117866.1| DNA gyrase subunit B [Burkholderia vietnamiensis G4]
 gi|134137288|gb|ABO53031.1| DNA gyrase subunit B [Burkholderia vietnamiensis G4]
          Length = 824

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 234/594 (39%), Positives = 338/594 (56%), Gaps = 33/594 (5%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94
             Q  + +Y ASSI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +AGY 
Sbjct: 6   NTQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYC 65

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVE--NHPKFP-NKSTLEIILTTLHAGGKFDNSTYEIS 151
           N I V++  +  ++V DNGRGIP +   + K    +S  EI++T LHAGGKFD ++Y++S
Sbjct: 66  NDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQNSYKVS 125

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKV 199
           GGLHGVG+S VNALS  L +TV R       +F RGI             +SP+      
Sbjct: 126 GGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGIAQDRVLEQVDGVEVSPMLVTGDT 185

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            N RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E      
Sbjct: 186 EN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD---- 239

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              F F GG+K +++   + ++ +   +F    EK G     VE A+ W +     +  +
Sbjct: 240 ---FAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGV---GVEVAMQWNDSYNENVLCF 293

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + E
Sbjct: 294 TNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPE 353

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F+ QTK KLVS + +  VE  +    + +L++ P +A  +   ++E +  R   RK R
Sbjct: 354 PKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPTDAKIICGKIVEAARARDAARKAR 413

Query: 437 EVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK
Sbjct: 414 EMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGK 473

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASL 554
           +LNV  A  +K+ +++QI+ LV ALGC         + LRY ++IIMTDADVDGAHI +L
Sbjct: 474 VLNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTL 533

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           LLTFFY++M +++E+ ++++  PPL++I  G    Y  D+      +      G
Sbjct: 534 LLTFFYRQMPEMVERGYVYIAQPPLYKIKAGKDERYLKDDAELNAHMLRLALQG 587



 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             +  ++      +  +   R+KGLGEM   QL ET MD   R LLRV+I   +      
Sbjct: 738 DFKSAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMDPTVRRLLRVQIEDAI----AA 793

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
                 LMG + + R  FI+  A    ++ 
Sbjct: 794 DGIFTTLMGDEVEPRRAFIESNALRAGNID 823


>gi|94676498|ref|YP_588600.1| DNA gyrase, B subunit [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|94219648|gb|ABF13807.1| DNA gyrase, B subunit [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 802

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 232/574 (40%), Positives = 341/574 (59%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCQEILV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V DNGRGIP + H +   +S  E+I+T LHAGGKFD+++Y++SGGLHGVGI
Sbjct: 62  TIHEDNSISVQDNGRGIPTDIHIE-ERRSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGI 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L + + R+  I+ Q +  G+P SPL+       + GT I F P   IF +K
Sbjct: 121 SVVNALSEKLELFIKREGHIYYQIYYNGVPQSPLKIVGN-SIQTGTTIRFWPSFIIFTNK 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L +  +  ++L+  +       +         + E F++ GG+K +++   +N
Sbjct: 180 KEFQYEILAQRLRELSFLNSGLSISLHDKRNS-------QLEHFHYQGGIKAFIKYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVAL 338
           +  I + IF    +K G     VE A+ W +     I  + N I    GGTH  G R A+
Sbjct: 233 KKPIHTNIFYIAVDKCGI---NVEIAMQWNDSCQENIYCFTNNIPQPNGGTHLVGFRTAM 289

Query: 339 TRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR I  Y +      K  I    DD     + ILSV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTINYYIDKEGYNKKNKIIATGDDAREGLIAILSVKVPDPKFSSQTKDKLVSSEVKAVV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
           E+ + + F  YL++ P +A  ++  +I+ +  R   RK RE   RK  +    LPGKLAD
Sbjct: 350 ESLMNERFIEYLLEYPSDARIIINKIIDAARAREAARKAREINKRKGILDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +      E+++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++ +I  
Sbjct: 410 CQERDPKFAEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSNEIAA 469

Query: 516 LVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+  LGC         + LRY  +IIMTDADVDG+HI +LLLTFFY+ M D+I + H+F+
Sbjct: 470 LITVLGCGIGRNEYNLDKLRYHTIIIMTDADVDGSHIRTLLLTFFYRYMPDIIHRGHIFI 529

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL+++ +G +  Y  DE+  ++        G
Sbjct: 530 AQPPLYKVRKGKQEQYIKDEDAMEQYQTSIAIKG 563



 Score =  131 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 8/112 (7%)

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           L+ P  + I +G    +  +    ++++E   K  +  + + R+KGLGEM  +QL ET M
Sbjct: 698 LMQPNTY-IKRGEHHKFVQN---FEQVVEWLAKESRHGLVVQRYKGLGEMNPTQLWETTM 753

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D   R +LRV +   +            LMG   + R  FIQE A  + ++ 
Sbjct: 754 DPANRNILRVTVKDAIM----ADQLFTTLMGDAVEPRRVFIQENALKVKNID 801


>gi|298252232|ref|ZP_06976035.1| DNA topoisomerase (ATP-hydrolyzing) [Ktedonobacter racemifer DSM
           44963]
 gi|297546824|gb|EFH80692.1| DNA topoisomerase (ATP-hydrolyzing) [Ktedonobacter racemifer DSM
           44963]
          Length = 687

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 220/695 (31%), Positives = 349/695 (50%), Gaps = 24/695 (3%)

Query: 2   TDDSIDLFSTLPPQS-QGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           +D     FS L  +S     E+++ +  +      A + A+  Y A+ I++LEG+  +R 
Sbjct: 5   SDLQQQEFSFLATRSIDEDREEIQHTHSVESKAPKARKQAA--YSAADIQVLEGISAIRH 62

Query: 61  RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           RPGMYIG T    L HL  E +DNA+DE +AGY   I V++D  G++TV D GRG+P + 
Sbjct: 63  RPGMYIGSTSTSGLVHLIWEALDNAVDEAVAGYGKQIWVTIDREGWVTVRDEGRGLPFDP 122

Query: 121 HP-KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179
              +        +ILT  H+GGKF    Y+ +GGLHGVG +V+NALS++L +T+ +    
Sbjct: 123 MLYQGDYLPAATVILTVPHSGGKFAEGAYKTAGGLHGVGSTVINALSEKLELTIWKDGQC 182

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
           FSQ FSRG  L P + +       GT++ +  D  IF     +    +    ++ AYL+ 
Sbjct: 183 FSQLFSRGTAL-PHQIEPCDPKLHGTQLRWAYDRAIFDPDVYYSLEAIDSRLKAAAYLNR 241

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            V   +   +   E      +  +Y   GL  Y++      +    +   G  ++K    
Sbjct: 242 GVTIHF---EAWDESLSEQVRRVYYSREGLPDYVRDLSSGANTPMFKHVLGIAKEKD--N 296

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL---TQNKRAI 355
            +VE A+         + SY N + T +GG HESG + ALT+ I  YA      +N+   
Sbjct: 297 VSVEVALQPTTGYKTALYSYANAVRTRDGGVHESGFKAALTKVINDYAIKLSVIKNRERD 356

Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415
               + +      ++SV +  P+F GQTK +L +   +  V + + +    +  +N +  
Sbjct: 357 GFKPEVIQQGLNVVISVKLTNPQFQGQTKDRLNNAPVEGIVRSIVDEGLKDWFEKNSVAG 416

Query: 416 TKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG-----KLADCSQNIAHGTELFIVE 470
            + L+ + +  + R   +   E+ R    +   +       K   C+ + A   ELFIVE
Sbjct: 417 KEWLKRIQQMQKARNEAQLVEELARAGTKKNNEMIDTSLSKKFLRCNTSDASRAELFIVE 476

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530
           GDSAGGSA Q R    QA+L L+GK LNVA A  + I  N++I  ++  LG  TR  +  
Sbjct: 477 GDSAGGSAGQGRFSEFQAILKLKGKPLNVAKADLKSIVENEEIRTIINVLGTGTRDVFDI 536

Query: 531 EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVY 590
             L++ +VII TDADVDG HI  LLLT F+QE  DLIEQ H+++  PPL+ +    K  +
Sbjct: 537 SRLKFNRVIIATDADVDGLHIQCLLLTLFHQEFSDLIEQGHVYIACPPLYSVKYKGKVHW 596

Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
             ++E +++ +          +E  RFKGLGEM   +L++T  D  +RTL RV +   + 
Sbjct: 597 LLNDEARERFVRTHADA--QNLEFKRFKGLGEMNPKELRDTTFDPARRTLKRVTMEDGVL 654

Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           + K   + +       A+ R  F+ E +  I ++ 
Sbjct: 655 AAKLVTELMED---KNAERRRVFLAEHSRKIKELD 686


>gi|125525330|gb|EAY73444.1| hypothetical protein OsI_01322 [Oryza sativa Indica Group]
          Length = 647

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 229/652 (35%), Positives = 356/652 (54%), Gaps = 43/652 (6%)

Query: 45  DASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGN 104
           D  S  +LE L+ VR RPGMYIG T  + LHHL  E++DNA+DE  AGYA  I       
Sbjct: 27  DGGSWSVLEALDGVRTRPGMYIGSTGSRGLHHLVYEILDNAVDEAQAGYATKI------- 79

Query: 105 GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST--YEISGGLHGVGISVV 162
                       P + HP+   KS +E +LT +HAGGKF  S   Y +SGGLHGVG+SVV
Sbjct: 80  ------------PTDIHPQ-TKKSCVETVLTLMHAGGKFGGSKSGYTVSGGLHGVGLSVV 126

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE---KVRNKRGTRITFRPDPKIFGDK 219
           NALS+ L VTV R    +   +SRG  ++ L  +    +  +++GTRI F PD  IF   
Sbjct: 127 NALSEALEVTVWRDGKEYRLNYSRGKAITMLTSRTLSDESSSRQGTRIRFWPDKHIFTTT 186

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             FD   +    +  A+L+  +    + +    E     +  E+ + GGL  Y++    +
Sbjct: 187 MDFDFNTIAGRIRELAFLNPELTIALTKE----EDDLQVQHNEYCYAGGLVEYVKWLNTD 242

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
           +  +   I   + E  G     V         +  +  Y N+I T +GGTH  GL+ +LT
Sbjct: 243 KKSLHDPI-AFRKEMDGIT-VDVSLQWCSDSYSDTVLGYANSIRTIDGGTHIDGLKTSLT 300

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  +A+ ++    + IS+  + +      I++V +  PEF GQTKT+L + + +R VE
Sbjct: 301 RTINNFAKKSKTLKDKDISLSGEHVREGMTCIIAVKVPNPEFEGQTKTRLGNPEVRRIVE 360

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADC 456
            ++++    YL  +P     +L   +   +  L  ++    V  K+ ++   LPGKLADC
Sbjct: 361 QSVQENLTEYLELHPDVLDSILSKSLNALKAALAAKRARELVRTKSVLKSSSLPGKLADC 420

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           + +    +E+FIVEGDSAGGSAKQ R+R  QA+LPLRGKILN+       +  N++I +L
Sbjct: 421 ASSDPEESEIFIVEGDSAGGSAKQGRDRKFQAILPLRGKILNIERRDEAALYKNEEIQNL 480

Query: 517 VQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           + ALG   + +   ++ LRY K++I+TDADVDGAHI +LLLTFF++    L ++  +++ 
Sbjct: 481 IVALGLGVKGEDFNKEALRYHKIVILTDADVDGAHIRTLLLTFFFRYQKALFDEGCIYVG 540

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL+++ +G ++ Y +D+   ++++  F  +      I RFKGLGEM+ +QL ET MD 
Sbjct: 541 VPPLYKVERGKQAHYCYDDADLKELVNTFPTN--ASYHIQRFKGLGEMMPAQLWETTMDP 598

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI--DDVG 685
            +R L ++++        +     + LMGT+ D R + IQ  AS +  + + 
Sbjct: 599 ERRMLKQLKVED----AAEANVVFSSLMGTRVDVRKQLIQNAASMVNLEHLD 646


>gi|327398178|ref|YP_004339047.1| DNA gyrase subunit B [Hippea maritima DSM 10411]
 gi|327180807|gb|AEA32988.1| DNA gyrase, B subunit [Hippea maritima DSM 10411]
          Length = 787

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 226/561 (40%), Positives = 329/561 (58%), Gaps = 16/561 (2%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y A  I++L+GLE VR RP MYIGGT  + LHHL  EV+DN++DE +AGY + I V ++ 
Sbjct: 4   YTAEDIKVLKGLEAVRKRPAMYIGGTSVEGLHHLVYEVVDNSIDEAMAGYCDTINVYINE 63

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +  +TV DNGRGIPV+ HP       + ++LTTLHAGGKFDN  Y++SGGLHGVGISVVN
Sbjct: 64  DNSITVEDNGRGIPVDIHP-VEKIPAVTLVLTTLHAGGKFDNKNYKVSGGLHGVGISVVN 122

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS+ L V V R+  I++Q+F +G P + LE   + +   GT ITF PD  IF     F 
Sbjct: 123 ALSEWLVVEVKREGKIYTQRFEKGTPTTDLEVIGQTKE-SGTVITFLPDKGIFE-ITEFS 180

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              LLK  +  A+L+  +K   +  +         + E F +  GL ++++   + ++ +
Sbjct: 181 YDILLKRLRELAFLNKGIKISLTDRR-------TDKSETFQYDKGLVSFVEYLSKTKNKL 233

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRGI 342
             E       +       VE A  + +     I ++ N+I T EGG H S  +  LT+ I
Sbjct: 234 FDEPVYFNITEGSVL---VELAFLYTDTYSSTIYTFANSINTAEGGVHLSAFKSVLTKTI 290

Query: 343 KKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            +YA+     K  +    DD+    V +LSV +  P+F GQTKTKLV+ D +  ++  L 
Sbjct: 291 NRYAKANNLVKGNVVFNGDDVREGIVAVLSVRLPNPQFEGQTKTKLVNTDIKNVIQTKLY 350

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNI 460
           +  + Y  ++P  A  +++ V      R   RK +E V RKT      LPGKLADC +  
Sbjct: 351 EKLNEYFEEHPQIAKLIIDKVSRAFNAREAARKAKELVRRKTVFESKGLPGKLADCQEKD 410

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
               ELF+VEGDSAGGSAKQAR+R  QA+LPL+GKILN      +K+  +++I +++ A+
Sbjct: 411 PLKAELFLVEGDSAGGSAKQARDRVYQAILPLKGKILNTERTNLKKVLESEEIRNIITAI 470

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           G      +  +D+RY K+IIMTDADVDG+HI +L+LT F++   +LIE  ++++  PPL+
Sbjct: 471 GSGVNESFNIDDVRYHKIIIMTDADVDGSHIQTLILTLFFRYFRELIENGYIYIAQPPLY 530

Query: 581 RITQGTKSVYAHDEEHKQKIL 601
           R   G K  Y  DE+  ++ L
Sbjct: 531 RCKIGKKEFYIKDEKQMKEFL 551



 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 8/109 (7%)

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PP F+     + +     +     +E+  K G   +EI R+KGLGEM   QL ET MD  
Sbjct: 686 PP-FKAKVKGELIEFKTIKDMLSFIEDRAKKG---LEIQRYKGLGEMNPEQLWETTMDPK 741

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            R LL+V I+      ++     N LMG     R +FI++ A F+  + 
Sbjct: 742 TRRLLQVTISD----AEEADRVFNMLMGNNPQLRKEFIEKNAKFVKHLD 786


>gi|157414325|ref|YP_001481581.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni 81116]
 gi|157385289|gb|ABV51604.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni 81116]
          Length = 769

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 248/660 (37%), Positives = 362/660 (54%), Gaps = 50/660 (7%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY AS+I++L+GLE VR RPGMYIG T+   LHH+  EV+DN++DE +AG+ + I+V +
Sbjct: 3   ENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVDNSIDEAMAGHCDTIDVEI 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV+ HP   N  TL ++LT LHAGGKFD  TY++SGGLHGVG+SV
Sbjct: 63  TTEGSCIVSDNGRGIPVDMHP-TENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS +L  TV R   I+ Q+FS G  +S      K +   GT I F PD +IF     
Sbjct: 122 VNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSKK-TGTTIEFWPDDQIFEVT-E 179

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L K  +  AYL+ ++   +  ++       + + E F+F GG+  ++    +  +
Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNR-------VGKHESFHFEGGISQFVTDLNKKEA 232

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340
           L  +  F+   E        VE A+ + +   E   S+ N I T +GGTHE+G R+ LTR
Sbjct: 233 LTKAIFFSVDEED-----VNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTR 287

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  Y E      ++   I  +D+    + ++SV + EP+F GQTK KL S   +  V  
Sbjct: 288 VISNYIEANASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVSK 347

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
           A  +    Y  +NPIEA  ++   +  +  R   +K RE   +K ++    LPGKLADC 
Sbjct: 348 ASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQ 407

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +E+++VEGDSAGGSAKQ R RS QA+LPLRGKILNV  A  +KI  ++QI +++
Sbjct: 408 SKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMI 467

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A GC     +    LRY K+IIMTDADVDG+HI +LLLTFF++ M +L+   H++L  P
Sbjct: 468 TAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQP 527

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET------ 631
           PL+   +  K +Y  DE+   + L E    G        ++G+G M    LK+       
Sbjct: 528 PLYLYKKAKKQIYLKDEKALSEYLIETGIEGLN------YEGIG-MND--LKDYLKIVAA 578

Query: 632 ----AMDANKR----TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
                 D  KR    +++R  I        + ++  + +         +F++ +   I +
Sbjct: 579 YRAILKDLEKRFNVISVIRYMIENSNLVKANNEELFSVI--------KQFLETQGHNILN 630



 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%)

Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
           ++   ++LE+ + + K    I R+KGLGEM   QL ET MD + R LL++ I       +
Sbjct: 681 DKDILEVLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIED----AQ 736

Query: 654 DTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              D+ N  MG + + R  +IQ  A  +  + 
Sbjct: 737 SANDTFNLFMGDEVEPRRDYIQAHAKDVKHLD 768


>gi|77414294|ref|ZP_00790453.1| DNA gyrase, B subunit [Streptococcus agalactiae 515]
 gi|77159673|gb|EAO70825.1| DNA gyrase, B subunit [Streptococcus agalactiae 515]
          Length = 577

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 232/587 (39%), Positives = 342/587 (58%), Gaps = 20/587 (3%)

Query: 60  MRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119
           MRPGMYIG T ++ LHHL  E++DN++DE +AG+A  I+V ++ +  +TVVD+GRGIPV+
Sbjct: 1   MRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFAGHIKVYIEPDNSITVVDDGRGIPVD 60

Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179
              K   +  +E + T LHAGGKF    Y++SGGLHGVG SVVNALS +L V V +   I
Sbjct: 61  IQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSTQLDVKVYKNGKI 119

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
             Q++ RG+ ++ LE      +  GT + F PDP+IF +   FD  +L K  Q  A+L+ 
Sbjct: 120 HYQEYQRGVVVNDLEIIGDT-DLSGTTVHFTPDPEIFTETTVFDFDKLAKRIQELAFLNR 178

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            ++   S  +E  E         +++ GG+ +Y++   EN+ +I         E  G   
Sbjct: 179 GLRISISDKREGQEVEKE-----YHYEGGIGSYVEFINENKEVIFENPIYTDGELDGI-- 231

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
            +VE A+ +       + S+ N I T EGGTHE G R ALTR I  YA+  +   +   +
Sbjct: 232 -SVEVAMQYTTGYQETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKILKENEDN 290

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           +  +D+      ++SV    P+F GQTKTKL + +  +       + F+ +L++NP  A 
Sbjct: 291 LTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFNRFLLENPQVAK 350

Query: 417 KLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
           K++E  I  S+ R+  ++ RE   +K+ +    LPGKLADCS N A   ELFIVEGDSAG
Sbjct: 351 KIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNAEMNELFIVEGDSAG 410

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           GSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I  L  A+G    + +    +RY
Sbjct: 411 GSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGFGADFDVSKVRY 470

Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHD- 593
           +K++IMTDADVDGAHI +LLLT  Y+ M  ++E  ++++  PP++ +  G++   Y    
Sbjct: 471 QKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKAYIQPG 530

Query: 594 ---EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
              EE  ++ L+ +   G+ K  + R+KGLGEM    L ET MD   
Sbjct: 531 VNQEEELRQALDTYS-SGRSKPTVQRYKGLGEMDDHXLWETXMDPET 576


>gi|329946872|ref|ZP_08294284.1| DNA gyrase, B subunit protein [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328526683|gb|EGF53696.1| DNA gyrase, B subunit protein [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 750

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 234/745 (31%), Positives = 347/745 (46%), Gaps = 97/745 (13%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
           P+  N+++  +Y A  + +LEGLE VR RPGMYIG TD++ L H   E++DNA+DE + G
Sbjct: 2   PSSENKTSRGDYSARHLSVLEGLEAVRKRPGMYIGSTDQRGLMHCVWEIVDNAVDEALEG 61

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           + + I V++  +G + V DNGRG+PV+  P     + +E++ T LHAGGKF   +Y  +G
Sbjct: 62  HGDDISVTVHDDGSIEVRDNGRGVPVDIEP-SSGLTGVELVYTKLHAGGKFGGGSYGAAG 120

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL------------------- 193
           GLHGVG SVVNAL++ + V V R    ++  F RG P                       
Sbjct: 121 GLHGVGASVVNALAERMDVEVDRGGKTYAMSFHRGEPGIFDDSSGRGPSSPFTEFTKASE 180

Query: 194 -EKKEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-- 249
                KVR    GTR+ +  DP+IF     +DAA L    +  ++L   +       +  
Sbjct: 181 LRVIGKVRRGVSGTRVRYWADPQIFPRPTEYDAAALRARLRQTSFLVPGLTLRLEDKRPE 240

Query: 250 --------------------------------------EIAEKYGIPEKEEFYFPGGLKT 271
                                                 ++ +       E F   GG   
Sbjct: 241 AEAIAASNTPAADAGETDDAVHEVTLRAAAKNATENRGDLFDTGDDDGVEVFQALGGTAD 300

Query: 272 YLQTKLENRSLISSEIFTGKTE-----------------KKGTHRGTVEWAIAWCEENPE 314
           ++     + S+  +   TG+                    +     TV+ A+ W      
Sbjct: 301 FVDFLASDGSVTDTFRLTGEGTYTETVQQLDRASGHLRPVEVERTCTVDVALRWGIGYET 360

Query: 315 IT-SYCNTILTDEGGTHESGLRVALTRGIKKYAEL-----TQNKRAISIISDDLMISAVG 368
              S+ N I T  GGTH +G   ALT+ ++K  E          +   +  DD+M     
Sbjct: 361 TERSFVNIIATPMGGTHLTGFEQALTKVLRKRIEADSRALKITSKDGRVEKDDIMAGLTA 420

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD----HYLVQNPIEATKLLEWVIE 424
           +++V + EP+F GQTK  L +   ++ V   +                 +A  L E ++ 
Sbjct: 421 VITVRVPEPQFEGQTKEVLGTGPVRQIVSKVVERELTTLLTSSKRDLKTQARALEEKIVG 480

Query: 425 RSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483
               R+  R  +E   RKTA+    LP KLADC  +    +ELFIVEGDSA G+AK ARN
Sbjct: 481 EMRARVSARLHKEITRRKTALETSSLPAKLADCRSDDVAASELFIVEGDSALGTAKNARN 540

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTD 543
              QA+LP+RGKILNV  A    +  N +   ++Q +G  +   +  E  RY KVI+MTD
Sbjct: 541 SEFQALLPIRGKILNVQKASQADMLRNVECSAIIQVVGAGSGRTFDLESARYGKVILMTD 600

Query: 544 ADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI------TQGTKSVYAHDEEHK 597
           ADVDGAHI +LLLT F++ M  +IE   +F   PPL RI       +  + +Y + +E  
Sbjct: 601 ADVDGAHIRTLLLTLFFRYMRPMIEAGRVFAAVPPLHRIEVSGSGRRKKEIIYTYSDEEL 660

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
              L   ++ G+   E  R+KGLGEM A QL ET M+   RTL R+ +  +   + + + 
Sbjct: 661 ITTLRRLERSGRSFKEPQRYKGLGEMDAHQLAETTMEPQHRTLRRITLGDEAQVM-EAES 719

Query: 658 SINKLMGTKADERFKFIQERASFID 682
               LMG+  + R  FI E A  +D
Sbjct: 720 IFELLMGSSVEPRRDFIVEGARDVD 744


>gi|254515866|ref|ZP_05127926.1| DNA gyrase, B subunit [gamma proteobacterium NOR5-3]
 gi|219675588|gb|EED31954.1| DNA gyrase, B subunit [gamma proteobacterium NOR5-3]
          Length = 804

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 227/577 (39%), Positives = 345/577 (59%), Gaps = 20/577 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANL 96
             AS++YD S I++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   
Sbjct: 2   SDASESYDGSKIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCGK 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I +++  +  ++V D+GRGIP + H      S  E+ILT LHAGGKFD++TY++SGGLHG
Sbjct: 62  ILITIHPDESVSVQDDGRGIPTDMHE--EGVSAAEVILTVLHAGGKFDDNTYKVSGGLHG 119

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+SVVNALS+EL +T+ R    + Q++  G+P   LE   +  +K GT I F+P  + F
Sbjct: 120 VGVSVVNALSEELWLTIWRAGRRYEQRYVHGVPQGSLEDVGEA-DKTGTLIRFKPSAETF 178

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   F+   L K  +  A+L+  V+     ++   E       + +++ GGLK ++   
Sbjct: 179 TNI-EFEFEILAKRLRELAFLNSGVEILLEDERSGKE-------DRYFYEGGLKAFVDYL 230

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
             N++ +          + GT    VE A+ W +     I  Y N I   +GGTH +G R
Sbjct: 231 NRNKTPMHKAFHFQADTEDGT---AVEVALQWNDSYQENIFCYTNNIPQRDGGTHLAGFR 287

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +
Sbjct: 288 SALTRTLNAYIEREGLAKKAKVNTTGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVK 347

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGK 452
             VE  + + F  YL+++P EA  ++  +++ +  R   RK R    RK A+    LPGK
Sbjct: 348 TVVEQTMNNRFSEYLLESPGEAKAIVTKMLDAARAREAARKAREMTRRKGALDIAGLPGK 407

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +  A  +E+++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+  + +
Sbjct: 408 LADCQEKDAALSEIYLVEGDSAGGSAKQGRNRRFQAILPLKGKILNVEKARFDKMLASVE 467

Query: 513 IMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +  LV ALGC   + ++  + LRY ++IIMTDADVDG+HI +LLLTFF+++M +LI++ +
Sbjct: 468 VGTLVTALGCGIGKEEFDPDKLRYHRIIIMTDADVDGSHIRTLLLTFFFRQMRELIDRGY 527

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +++  PPL++I +G +  Y  D+    + L      G
Sbjct: 528 VYIAQPPLYKIAKGKQHQYLKDDAALAEFLTAQALDG 564



 Score =  148 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 7/103 (6%)

Query: 583 TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLR 642
            +G K++   D     + LE      K    I R+KGLGEM   QL ET MD   R +L+
Sbjct: 708 QRGEKTLQTQD---FVEGLEWLMAEAKKGYYIQRYKGLGEMNPEQLWETTMDPESRRMLQ 764

Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           V I+  +       +    LMG + + R +FI++ A ++ ++ 
Sbjct: 765 VTIDDAM----LADEIFTTLMGDQVEPRREFIEQNALYVSNLD 803


>gi|326578064|gb|EGE27924.1| DNA gyrase subunit B [Moraxella catarrhalis O35E]
          Length = 819

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 224/581 (38%), Positives = 336/581 (57%), Gaps = 18/581 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85
                +      +    Y A ++R+L GLE VR+RPGMYIG TD+   LHH+  EV+DNA
Sbjct: 1   MTDNTNNHPQVDAQEIEYTAKNVRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNA 60

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AG+ + I + +  +  ++V+DNGRGIPV+ HP+    S  E+I+T LHAGGKFD+
Sbjct: 61  IDEALAGHCDEINIIVHDDESVSVMDNGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDD 119

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +L +T+ R     +Q ++ G+P +PL K E    + GT
Sbjct: 120 NSYKVSGGLHGVGVSVVNALSKKLILTIWRDGYAHTQNYTDGVPDAPLAKLEPST-QTGT 178

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           ++ F P  +IF     FD   L K  +  ++L+  V+   + ++           + F  
Sbjct: 179 QVRFYPSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDER-------TSTTQVFEH 231

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GGL  ++      +  ++           G     VE A+ W +    ++  + N I  
Sbjct: 232 KGGLSEFVSYINGGKHTLNDIFHF---TADGADGIGVEVALQWSDSYNEKVLCFTNNIPQ 288

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH SG R ALTR +  Y +      K  + I  DD       I+SV + +P+F+ Q
Sbjct: 289 KDGGTHLSGFRSALTRCLNYYLDSENITKKEKVQITGDDAREGLTAIISVKVPDPKFSSQ 348

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441
           TK KLVS + +  VE A+ +    YL++NP  A  +   +I+ +  R   RK      RK
Sbjct: 349 TKDKLVSSEVKSVVETAMHERLSEYLLENPTAAKMIASKIIDAARARDAARKAREMTRRK 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR  QA+LPL+GKILNV  
Sbjct: 409 STLDIAGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +K+ ++ ++  L+ ALG      +Y  + +RY K++IMTDADVDG+HI +LLLTFF+
Sbjct: 469 ARFDKMLSSAEVGTLITALGTGIGPGEYNPDKIRYHKIVIMTDADVDGSHIRTLLLTFFF 528

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++M +LIE+ H+++  PPL+++ +G + VY  D E     L
Sbjct: 529 RQMPELIERGHIYIAQPPLYKVKRGKQEVYLKDTEALDAYL 569



 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 8/105 (7%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K     D    + + ++     +  +++ R+KGLGEM   QL ET MD   R +L
Sbjct: 723 LRRGDKDFIIKD---FEYLWQQLMLAARRGVDVQRYKGLGEMNKEQLWETTMDPENRRML 779

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           ++ I   +          + LMG + + R  FI+E A   D + T
Sbjct: 780 KITIEDAIK----ADHLFSCLMGDEVEPRRIFIEENALNAD-IDT 819


>gi|291615236|ref|YP_003525393.1| DNA topoisomerase IV, B subunit [Sideroxydans lithotrophicus ES-1]
 gi|291585348|gb|ADE13006.1| DNA topoisomerase IV, B subunit [Sideroxydans lithotrophicus ES-1]
          Length = 652

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 251/663 (37%), Positives = 373/663 (56%), Gaps = 39/663 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+ +S ++L GLEPVR RPGMY   T+ ++ +H+ +EV+DNA DE +AG+A  I V+  
Sbjct: 3   TYNEASFKVLRGLEPVRQRPGMY---TNLESPNHIIAEVVDNACDEALAGHAKNIFVTAH 59

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD---NSTYEISGGLHGVGI 159
            +G ++V D+GRGIPV  H K   +S +E+  T LH+GGKFD   +  Y+ +GGLHGVG+
Sbjct: 60  ADGSVSVKDDGRGIPVGIH-KEEGRSVVEVAFTVLHSGGKFDKESDGAYKFAGGLHGVGV 118

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           +V NALS ++ VTV R+      +F  G+   PL K     +N+ GT +   P+PK F  
Sbjct: 119 AVTNALSKQVEVTVFREGGQHELRFVDGVAEKPLAKVGTCPKNQTGTMVRAWPNPKYFDA 178

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
               + A+L    +SKA L   V    + +K    K          +P GL+ YL   L 
Sbjct: 179 PN-VNLAQLELSLRSKAVLLPGVTITLNLEKTGETKSWT-------YPDGLRGYLAEALS 230

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVE-----WAIAWCEENP-EITSYCNTILTDEGGTHES 332
              L +  +   K  +KG   G  E     WA+ W  E      SY N I T  GGTHE+
Sbjct: 231 EFELATPILLQEKFTRKGDTTGFAEGEGASWALTWSAEGNVVRESYVNLIPTPAGGTHEA 290

Query: 333 GLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           GLR  +   +K +AE  +   + + ++ +D+   A  +LS  + +P+F GQTK KLVS D
Sbjct: 291 GLRDGVFNAVKAFAEIHSLLPKGVKLVPEDVFSRASFVLSAKVLDPQFQGQTKEKLVSRD 350

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           A R V + ++DP + +L ++   A K++E  I++++ R+R  ++ E  + +++  L  PG
Sbjct: 351 ALRLVSSMIKDPLELWLNEHLEPAKKIVELAIQQAQARMRSAQKVEKKKGSSVAVL--PG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL DCS +    TELF+VEGDSAGGSAKQ RN+  QAVLPLRGK+LN      +++  N 
Sbjct: 409 KLTDCSSSDPSRTELFLVEGDSAGGSAKQGRNKEFQAVLPLRGKVLNTFEVEKDRLFANN 468

Query: 512 QIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +I D+  A+G    +     D   LRY  ++IM DADVDG+HI++LLLT FY+  Y ++E
Sbjct: 469 EIHDIAVAIGVDPHAPTDSVDLSGLRYNAILIMADADVDGSHISTLLLTLFYRHFYRVVE 528

Query: 569 QKHLFLISPPLFRIT---QGTKS---VYAHDEEHKQKILEEFKKHG--KGKIEISRFKGL 620
              +++  PPLFRI     G K    +YA +E     IL+  +K    +G   ISRFKGL
Sbjct: 529 AGKIYIAQPPLFRIDVPAHGKKQASKIYALNEGEMTGILDRLRKEKIREGSWSISRFKGL 588

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQERAS 679
           GEM   QL +T ++ + R  L V+ +    S K T    N LMG  +A  R  +++   +
Sbjct: 589 GEMSPEQLWDTTLNPDTRRALCVKADSA--SFKATMSIFNMLMGKQEASTRRAWLEYHGN 646

Query: 680 FID 682
            ++
Sbjct: 647 EVE 649


>gi|206603337|gb|EDZ39817.1| DNA gyrase, B subunit [Leptospirillum sp. Group II '5-way CG']
          Length = 818

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 222/573 (38%), Positives = 332/573 (57%), Gaps = 14/573 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + +   + Y A  IR+LEGLE VR+RPGMYIG T    LHHL  E++DN++DE +AG+ 
Sbjct: 2   SSGEPVEEEYTAEHIRVLEGLEAVRVRPGMYIGSTGIDGLHHLVYELVDNSVDEALAGHC 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I V++  +  +TV DNGRGIP   H +   +S  E++LT LHAGGKF+N+ Y++SGGL
Sbjct: 62  SEIHVTIHPDRSVTVADNGRGIPTGMHAEQ-KRSAAEVVLTVLHAGGKFNNNLYKVSGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS+ L + + +   I  Q + +G P +PL    +   +RGT I F PD  
Sbjct: 121 HGVGVSVVNALSETLFLEIHQNGLIHRQTYHKGAPDAPLAVFGETA-QRGTIIRFWPDMT 179

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           I      F    L    +  A+L+  +      ++ + E       E F+F GG+++++ 
Sbjct: 180 IMET-DQFSFDTLSHRFRELAFLNPVLTIHLKEEETLRE-------ETFHFEGGVQSFVS 231

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGL 334
              EN+  +   +F  KT + G+ +  V +      EN  +  + N I T EGGTH  G 
Sbjct: 232 FLNENKKTLHDVLFFRKTLEDGS-QFEVAFQYQESTENETVLGFANNIHTREGGTHVRGF 290

Query: 335 RVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           R A+T+ I ++    Q  +   +  +D+     GI+SV I  P+F GQTK KL S     
Sbjct: 291 RTAITKTINRFIREKQLNKGEEVRGEDVREGLTGIISVRIPGPQFEGQTKAKLGSSWVAG 350

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            +E+ L +       ++P+ A K+ E  +  ++ R   RK ++   RK  +    LPGKL
Sbjct: 351 AMESFLSEALQEKFEEDPLTAKKIAEKAVLTAQAREAARKAKDLAKRKNVLEGSNLPGKL 410

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG-SEKIRNNQQ 512
           ADC ++    +EL+IVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  +   EK   N +
Sbjct: 411 ADCQESDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKGKILNVEKSRGIEKFITNDE 470

Query: 513 IMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +  L+ A+GC    +   E+ LRY K+IIMTDADVDGAHI +LLLTFF++ M  LI+ + 
Sbjct: 471 VRALITAVGCGLGEEEFSEKKLRYHKIIIMTDADVDGAHIRTLLLTFFFRHMNPLIDGQF 530

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           +++  PPL++++ G +  Y  ++E  Q  + E 
Sbjct: 531 VYIAQPPLYKVSYGRQERYLLNDEALQAYILEL 563



 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 9/108 (8%)

Query: 580 FRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           F + +G   + V           LE      + K+ I R+KGLGEM   QL ET MD ++
Sbjct: 717 FVLKRGAEGEEVRFRSPRELLSFLET---PVRQKLSIQRYKGLGEMNPEQLWETTMDPSR 773

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           RTLL+V I   +    +       LMG +   R +FI++ A  + ++ 
Sbjct: 774 RTLLKVSIPDYV----EADRVFTTLMGEQVAPRREFIEKHALDVANLD 817


>gi|254295377|ref|YP_003061400.1| DNA gyrase subunit B [Hirschia baltica ATCC 49814]
 gi|254043908|gb|ACT60703.1| DNA gyrase, B subunit [Hirschia baltica ATCC 49814]
          Length = 813

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 240/595 (40%), Positives = 347/595 (58%), Gaps = 30/595 (5%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
               + +  Y A SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+
Sbjct: 1   MTEPTQNAEYGAGSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMIYEVVDNAIDEALAGH 60

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ + V+L  +G  ++ DNGRG+PV+ HP     S  E+I+T LHAGGKFD+++Y++SGG
Sbjct: 61  ADYVTVTLHPDGSASISDNGRGVPVDLHP-TEGISAAEVIMTQLHAGGKFDDNSYKVSGG 119

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK-------VRNKRGTR 206
           LHGVG+SVVNALS+ L +++ R    +S +F+ G+  +PLE            R + GT 
Sbjct: 120 LHGVGVSVVNALSEWLQLSINRNGKRYSMRFTHGVSDAPLEIVGDAPMRPDGTRPETGTE 179

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F P    F     F    L    +  A+L+  VK  +  ++        P +    + 
Sbjct: 180 VRFLPSTDTFT-MVEFKRETLEHRLRELAFLNSGVKIVFRDER-----PAEPIETILEYE 233

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTD 325
           GG+  +++   ++R+ I  E    + EK G    TV+ A+ W +   E    + N I   
Sbjct: 234 GGVVAFVEHLDKSRTKILPEAIQARAEKDG---MTVDAALQWNDGYHENVLCFTNNIPQR 290

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R ALTR I KYA+ T    K  + I  DD       +LSV + +P+F+ QT
Sbjct: 291 DGGTHLAGFRAALTRVINKYAQATGVAKKEKVDISGDDAREGLTCVLSVKVPDPKFSSQT 350

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKT 442
           K KLVS + +  V+N + +    +  +NP EA  +++ +++ +  R   R+ R+   RKT
Sbjct: 351 KDKLVSSEVRPIVDNLMTEALSTWFEENPNEAKIIMQKIVQAAAAREAMRRARDLARRKT 410

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR NQAVLPLRGKILNV  A
Sbjct: 411 ALDITSLPGKLADCQEKDPAKSELFIVEGDSAGGSAKQGRNRENQAVLPLRGKILNVERA 470

Query: 503 GSEKIRNNQQIMDLVQALGC--------RTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554
             +++  + Q+  L+ ALG              ++ + LRY K+IIMTDADVDGAHI +L
Sbjct: 471 RFDRMLGSDQVGTLITALGASIGRRSEENPNEGFQPDKLRYHKIIIMTDADVDGAHIRTL 530

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK 609
           LLTFFY++M +LIE+ HLF+  PPL++  +G  S Y  D+      L E    G+
Sbjct: 531 LLTFFYRQMPELIERGHLFIAQPPLYKAEKGRSSRYLKDDAEMDAFLIEEGTSGE 585



 Score =  123 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L    K G   I+I R+KGLGEM   QL ET +D N R+LL+V +           + 
Sbjct: 731 SLLSAVLKSGAKGIKIQRYKGLGEMNPDQLWETTLDRNARSLLQVRVEH----ADTADEM 786

Query: 659 INKLMGTKADERFKFIQERASFID 682
             KLMG   + R +FIQE A   +
Sbjct: 787 FTKLMGDVVEPRREFIQENALEAE 810


>gi|326575517|gb|EGE25442.1| DNA gyrase subunit B [Moraxella catarrhalis 101P30B1]
          Length = 819

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 224/581 (38%), Positives = 336/581 (57%), Gaps = 18/581 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85
                +      +    Y A ++R+L GLE VR+RPGMYIG TD+   LHH+  EV+DNA
Sbjct: 1   MTDNTNNHPQVDAQEIEYTAKNVRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNA 60

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AG+ + I + +  +  ++V+DNGRGIPV+ HP+    S  E+I+T LHAGGKFD+
Sbjct: 61  IDEALAGHCDEINIIVHDDESVSVMDNGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDD 119

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +L +T+ R     +Q ++ G+P +PL K E    + GT
Sbjct: 120 NSYKVSGGLHGVGVSVVNALSKKLILTIWRDGYAHTQNYTDGVPDAPLAKLEPST-QTGT 178

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           ++ F P  +IF     FD   L K  +  ++L+  V+   + ++           + F  
Sbjct: 179 QVRFYPSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDER-------TSTTQVFEH 231

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GGL  ++      +  ++           G     VE A+ W +    ++  + N I  
Sbjct: 232 KGGLSEFVSYINGGKHTLNDIFHF---TADGADGIGVEVALQWSDSYNEKVLCFTNNIPQ 288

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH SG R ALTR +  Y +      K  + I  DD       I+SV + +P+F+ Q
Sbjct: 289 KDGGTHLSGFRSALTRCLNHYLDSENITKKEKVQITGDDAREGLTAIISVKVPDPKFSSQ 348

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441
           TK KLVS + +  VE A+ +    YL++NP  A  +   +I+ +  R   RK      RK
Sbjct: 349 TKDKLVSSEVKSVVETAMHERLSEYLLENPTAAKMIASKIIDAARARDAARKAREMTRRK 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR  QA+LPL+GKILNV  
Sbjct: 409 STLDIAGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +K+ ++ ++  L+ ALG      +Y  + +RY K++IMTDADVDG+HI +LLLTFF+
Sbjct: 469 ARFDKMLSSAEVGTLITALGTGIGPDEYNPDKIRYHKIVIMTDADVDGSHIRTLLLTFFF 528

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++M +LIE+ H+++  PPL+++ +G + VY  D E     L
Sbjct: 529 RQMPELIERGHIYIAQPPLYKVKRGKQEVYLKDTEALDAYL 569



 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 8/105 (7%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K     D    + + ++     +  +++ R+KGLGEM   QL ET MD   R +L
Sbjct: 723 LRRGDKDFIIKD---FEYLWQQLMLAARRGVDVQRYKGLGEMNKEQLWETTMDPENRRML 779

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           ++ I   +          + LMG + + R  FI+E A   D + T
Sbjct: 780 KITIEDAIK----ADHLFSCLMGDEVEPRRIFIEENALNAD-IDT 819


>gi|182677812|ref|YP_001831958.1| DNA gyrase, B subunit [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182633695|gb|ACB94469.1| DNA gyrase, B subunit [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 817

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 234/583 (40%), Positives = 339/583 (58%), Gaps = 21/583 (3%)

Query: 30  PDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDE 88
            +  +    +    Y A SI++L GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE
Sbjct: 2   DEPASAPLTNEEQAYGADSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMIYEVVDNAIDE 61

Query: 89  VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148
            +AG+A  + V+L+ +G +TV D+GRGIP + H +    S  E+I+T LHAGGKFD ++Y
Sbjct: 62  ALAGHATRVTVTLNADGSVTVTDDGRGIPTDIHAE-EGVSAAEVIMTQLHAGGKFDQNSY 120

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-----RNKR 203
           ++SGGLHGVG+SVVNALS  L + + R        F  G+  S L           + KR
Sbjct: 121 KVSGGLHGVGVSVVNALSTWLKLRIWRDGKEHEITFEHGVAKSSLAVVGPAPEIDGKPKR 180

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF P P+ F     F  A +    +  A+L+  V+   +  +    K      EE 
Sbjct: 181 GTEVTFLPSPETFS-MVDFTYATIEHRLRELAFLNSGVRILLTDARGAEVKV-----EEL 234

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTI 322
           ++ GGL+ +++     +S +  +      E+ G    TVE A+ W +   E   ++ N I
Sbjct: 235 HYEGGLEAFVRFLDRAKSPLLDQPILIAGERDGI---TVEAALWWNDSYHEHVLAFTNNI 291

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFA 380
              +GGTH +GLR ALTR +  YA+ +   +   +    DD       +LSV + +P+F+
Sbjct: 292 PQRDGGTHLTGLRSALTRQVTGYADRSGLIKREKVDLAPDDCREGLTCVLSVKVPDPKFS 351

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VN 439
            QTK KLVS + +  VE+ + D    +  ++P EA  ++  V+E ++ R   RK RE   
Sbjct: 352 SQTKEKLVSSEVRPVVESLVNDKLGQWFEEHPQEARSIIGKVVEAAQAREAARKARELTR 411

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +      ELF+VEGDSAGGSAKQ RNR  QAVLPLRGKILNV
Sbjct: 412 RKGALDVANLPGKLADCQERDPAKAELFLVEGDSAGGSAKQGRNREYQAVLPLRGKILNV 471

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
             A  +K+ ++Q+I  L+ ALG       +  + LRY K+IIMTDADVDG+HI +LLLTF
Sbjct: 472 ERARFDKMLSSQEIGTLITALGTGIGHEDFNPDKLRYHKIIIMTDADVDGSHIRTLLLTF 531

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           F+++M  LIE+ HL++  PPL+++ +G+   Y  DE  ++  L
Sbjct: 532 FFRQMRPLIERGHLYIAQPPLYKVKRGSSEQYLKDERAREDYL 574



 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 5/88 (5%)

Query: 599 KILEEFKKHGKGKI-EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
            +L+     G+  I ++ R+KGLGEM   QL ET +D   R+LL+V I        D  D
Sbjct: 733 DLLDAVMAAGQKGISQMQRYKGLGEMNPDQLWETTLDREARSLLQVRI----KEGDDADD 788

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
              KLMG   + R +FIQ+ A  + ++ 
Sbjct: 789 IFVKLMGDIVEPRREFIQDNALNVHNLD 816


>gi|326571722|gb|EGE21735.1| DNA gyrase subunit B [Moraxella catarrhalis BC8]
          Length = 819

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 224/581 (38%), Positives = 336/581 (57%), Gaps = 18/581 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85
                +      +    Y A ++R+L GLE VR+RPGMYIG TD+   LHH+  EV+DNA
Sbjct: 1   MTDNTNNHPQVDAQEIEYTAKNVRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNA 60

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AG+ + I + +  +  ++V+DNGRGIPV+ HP+    S  E+I+T LHAGGKFD+
Sbjct: 61  IDEALAGHCDEINIIVHDDESVSVMDNGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDD 119

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +L +T+ R     +Q ++ G+P +PL K E    + GT
Sbjct: 120 NSYKVSGGLHGVGVSVVNALSKKLILTIWRDGYAHTQNYTDGVPDAPLAKLEPST-QTGT 178

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           ++ F P  +IF     FD   L K  +  ++L+  V+   + ++           + F  
Sbjct: 179 QVRFYPSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDER-------TSTTQVFEH 231

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GGL  ++      +  ++           G     VE A+ W +    ++  + N I  
Sbjct: 232 KGGLSEFVSYINGGKHTLNDIFHF---TADGADGIGVEVALQWSDSYNEKVLCFTNNIPQ 288

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH SG R ALTR +  Y +      K  + I  DD       I+SV + +P+F+ Q
Sbjct: 289 KDGGTHLSGFRSALTRCLNHYLDSENITKKEKVQITGDDAREGLTAIISVKVPDPKFSSQ 348

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441
           TK KLVS + +  VE A+ +    YL++NP  A  +   +I+ +  R   RK      RK
Sbjct: 349 TKDKLVSSEVKSVVETAMHERLSEYLLENPTAAKMIASKIIDAARARDAARKAREMTRRK 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR  QA+LPL+GKILNV  
Sbjct: 409 STLDIAGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +K+ ++ ++  L+ ALG      +Y  + +RY K++IMTDADVDG+HI +LLLTFF+
Sbjct: 469 ARFDKMLSSAEVGTLITALGTGIGPDEYNPDKIRYHKIVIMTDADVDGSHIRTLLLTFFF 528

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++M +LIE+ H+++  PPL+++ +G + VY  D E     L
Sbjct: 529 RQMPELIERGHIYIAQPPLYKVKRGKQEVYLKDTEALDAYL 569



 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 8/105 (7%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K     D    + + ++     +  +++ R+KGLGEM   QL ET MD   R +L
Sbjct: 723 LRRGDKDFIIKD---FEYLWQQLMLAARRGVDVQRYKGLGEMNKEQLWETTMDPENRRML 779

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           ++ I   +          + LMG + + R  FI+E A   D + T
Sbjct: 780 KITIEDAIK----ADHLFSCLMGDEVEPRRIFIEENALNAD-IDT 819


>gi|326562313|gb|EGE12639.1| DNA gyrase subunit B [Moraxella catarrhalis 103P14B1]
          Length = 819

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 223/581 (38%), Positives = 335/581 (57%), Gaps = 18/581 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85
                +      +    Y A ++R+L GLE VR+RPGMYIG TD+   LHH+  EV+DNA
Sbjct: 1   MTDNTNNHPQVDAQEIEYTAKNVRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNA 60

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AG+ + I + +  +  ++V+DNGRGIPV+ HP+    S  E+I+T LHAGGKFD+
Sbjct: 61  IDEALAGHCDEINIIVHDDESVSVMDNGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDD 119

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +L + + R     +Q ++ G+P +PL K E    + GT
Sbjct: 120 NSYKVSGGLHGVGVSVVNALSKKLILNIWRDGYAHTQNYTDGVPDAPLAKLEPST-QTGT 178

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           ++ F P  +IF     FD   L K  +  ++L+  V+   + ++           + F  
Sbjct: 179 QVRFYPSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDER-------TSTTQVFEH 231

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GGL  ++      +  ++           G     VE A+ W +    ++  + N I  
Sbjct: 232 KGGLSEFVSYINGGKHTLNDIFHF---TADGADGIGVEVALQWSDSYNEKVLCFTNNIPQ 288

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH SG R ALTR +  Y +      K  + I  DD       I+SV + +P+F+ Q
Sbjct: 289 KDGGTHLSGFRSALTRCLNHYLDSENITKKEKVQITGDDAREGLTAIISVKVPDPKFSSQ 348

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441
           TK KLVS + +  VE A+ +    YL++NP  A  +   +I+ +  R   RK      RK
Sbjct: 349 TKDKLVSSEVKSVVETAMHERLSEYLLENPTAAKMIASKIIDAARARDAARKAREMTRRK 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR  QA+LPL+GKILNV  
Sbjct: 409 STLDIAGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +K+ ++ ++  L+ ALG      +Y  + +RY K++IMTDADVDG+HI +LLLTFF+
Sbjct: 469 ARFDKMLSSAEVGTLITALGTGIGPDEYNPDKIRYHKIVIMTDADVDGSHIRTLLLTFFF 528

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++M +LIE+ H+++  PPL+++ +G + VY  D E     L
Sbjct: 529 RQMPELIERGHIYIAQPPLYKVKRGKQEVYLKDTEALDAYL 569



 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 8/105 (7%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K     D    + + ++     +  +++ R+KGLGEM   QL ET MD   R +L
Sbjct: 723 LRRGDKDFIIKD---FEYLWQQLMLAARRGVDVQRYKGLGEMNKEQLWETTMDPENRRML 779

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           ++ I   +          + LMG + + R  FI+E A   D + T
Sbjct: 780 KITIEDAIK----ADHLFSCLMGDEVEPRRIFIEENALNAD-IDT 819


>gi|326560704|gb|EGE11072.1| DNA gyrase subunit B [Moraxella catarrhalis 46P47B1]
 gi|326563089|gb|EGE13362.1| DNA gyrase subunit B [Moraxella catarrhalis 12P80B1]
 gi|326574364|gb|EGE24307.1| DNA gyrase subunit B [Moraxella catarrhalis CO72]
          Length = 819

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 224/581 (38%), Positives = 336/581 (57%), Gaps = 18/581 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85
                +      +    Y A ++R+L GLE VR+RPGMYIG TD+   LHH+  EV+DNA
Sbjct: 1   MTDNTNNHPQVDAQEIEYTAKNVRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNA 60

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AG+ + I + +  +  ++V+DNGRGIPV+ HP+    S  E+I+T LHAGGKFD+
Sbjct: 61  IDEALAGHCDEINIIVHDDESVSVMDNGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDD 119

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +L +T+ R     +Q ++ G+P +PL K E    + GT
Sbjct: 120 NSYKVSGGLHGVGVSVVNALSKKLILTIWRDGYAHTQNYTDGVPDAPLAKLEPST-QTGT 178

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           ++ F P  +IF     FD   L K  +  ++L+  V+   + ++           + F  
Sbjct: 179 QVRFYPSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDER-------TSTTQVFEH 231

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GGL  ++      +  ++           G     VE A+ W +    ++  + N I  
Sbjct: 232 KGGLSEFVSYINGGKHTLNDIFHF---TADGADGIGVEVALQWSDSYNEKVLCFTNNIPQ 288

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH SG R ALTR +  Y +      K  + I  DD       I+SV + +P+F+ Q
Sbjct: 289 KDGGTHLSGFRSALTRCLNHYLDSENITKKEKVQITGDDAREGLTAIISVKVPDPKFSSQ 348

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441
           TK KLVS + +  VE A+ +    YL++NP  A  +   +I+ +  R   RK      RK
Sbjct: 349 TKDKLVSSEVKSVVETAMHERLSEYLLENPTAAKMIASKIIDAARARDAARKAREMTRRK 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR  QA+LPL+GKILNV  
Sbjct: 409 STLDIAGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +K+ ++ ++  L+ ALG      +Y  + +RY K++IMTDADVDG+HI +LLLTFF+
Sbjct: 469 ARFDKMLSSAEVGTLITALGTGIGPGEYNPDKIRYHKIVIMTDADVDGSHIRTLLLTFFF 528

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++M +LIE+ H+++  PPL+++ +G + VY  D E     L
Sbjct: 529 RQMPELIERGHIYIAQPPLYKVKRGKQEVYLKDTEALDAYL 569



 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 8/105 (7%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K     D    + + ++     +  +++ R+KGLGEM   QL ET MD   R +L
Sbjct: 723 LRRGDKDFIIKD---FEYLWQQLMLAARRGVDVQRYKGLGEMNKEQLWETTMDPENRRML 779

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           ++ I   +          + LMG + + R  FI+E A   D + T
Sbjct: 780 KITIEDAIK----ADHLFSCLMGDEVEPRRIFIEENALNAD-IDT 819


>gi|109896336|ref|YP_659591.1| DNA gyrase, B subunit [Pseudoalteromonas atlantica T6c]
 gi|109698617|gb|ABG38537.1| DNA gyrase subunit B [Pseudoalteromonas atlantica T6c]
          Length = 806

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 220/574 (38%), Positives = 344/574 (59%), Gaps = 18/574 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
            + YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I V
Sbjct: 4   ENKYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTNINV 63

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            +  +G ++V D+GRGIP E H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 64  KIHTDGSVSVKDDGRGIPTEIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 122

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R   +  Q++  G+P  PLE   +  +  GT I F P  + F   
Sbjct: 123 SVVNALSRKLQIMIRRAGEVHEQEYQHGVPQKPLEVIGE-SDTTGTSIRFWPSEETFTGI 181

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V      +++        +K+ F + GG++ +++   +N
Sbjct: 182 -EFHYDILAKRLRELSFLNSGVSIILEDERD-------GKKDHFMYEGGIRAFVEYLNQN 233

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ +  ++F   +++      +VE A+ W +     +  + N I   +GG+H +G R AL
Sbjct: 234 KTPVHQQVFHFNSQRDD--GISVEVALQWNDSFQENVFCFTNNIPQRDGGSHLAGFRGAL 291

Query: 339 TRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  + E      K   S   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 292 TRTLNTFMEKEGHNKKNKTSASGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVRPAV 351

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLAD 455
           E  + +  + +L++NP  +  ++  +I+ +  R   RK      RK A+    LPGKLAD
Sbjct: 352 ETVMGEKLNEFLLENPSASKIIIGKIIDAARAREAARKARDMTRRKGALDLAGLPGKLAD 411

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 412 CQEKDPSLSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 471

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y  E LRY ++IIMTDADVDG+HI +LLLTFFY++M ++IE+ ++++
Sbjct: 472 LITALGCGIGRDEYDPEKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYIYI 531

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             PPL++  +G +  Y  D++   K L       
Sbjct: 532 AQPPLYKTKKGKQEQYLKDDDSLTKYLTAIALDN 565



 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +  K             L    K G+    I R+KGLGEM   QL ET MD   R +L
Sbjct: 709 VKRNDKVKAISSFAEGLDWLMAESKKGQY---IQRYKGLGEMNPGQLWETTMDPASRRML 765

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V++   +            LMG   + R  FI+E A  + ++ 
Sbjct: 766 QVKVEDAI----AADQLFTTLMGDHVEPRRAFIEENALRVANLD 805


>gi|296112234|ref|YP_003626172.1| DNA gyrase subunit B [Moraxella catarrhalis RH4]
 gi|295919928|gb|ADG60279.1| DNA gyrase subunit B [Moraxella catarrhalis RH4]
          Length = 819

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 223/581 (38%), Positives = 335/581 (57%), Gaps = 18/581 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85
                +      +    Y A ++R+L GLE VR+RPGMYIG TD+   LHH+  EV+DNA
Sbjct: 1   MTDNTNNHPQVDAQEIEYTAKNVRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNA 60

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AG+ + I + +  +  ++V+DNGRGIPV+ HP+    S  E+I+T LHAGGKFD+
Sbjct: 61  IDEALAGHCDEINIIVHDDESVSVMDNGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDD 119

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +L + + R     +Q ++ G+P +PL K E    + GT
Sbjct: 120 NSYKVSGGLHGVGVSVVNALSKKLILNIWRDGYAHTQNYTDGVPDAPLAKLEPST-QTGT 178

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           ++ F P  +IF     FD   L K  +  ++L+  V+   + ++           + F  
Sbjct: 179 QVRFYPSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDER-------TSTTQVFEH 231

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GGL  ++      +  ++           G     VE A+ W +    ++  + N I  
Sbjct: 232 KGGLSEFVSYINGGKHTLNDIFHF---TADGADGIGVEVALQWSDSYNEKVLCFTNNIPQ 288

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH SG R ALTR +  Y +      K  + I  DD       I+SV + +P+F+ Q
Sbjct: 289 KDGGTHLSGFRSALTRCLNHYLDSENITKKEKVQITGDDAREGLTAIISVKVPDPKFSSQ 348

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441
           TK KLVS + +  VE A+ +    YL++NP  A  +   +I+ +  R   RK      RK
Sbjct: 349 TKDKLVSSEVKSVVETAMHERLSEYLLENPTAAKMIASKIIDAARARDAARKAREMTRRK 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR  QA+LPL+GKILNV  
Sbjct: 409 STLDIAGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +K+ ++ ++  L+ ALG      +Y  + +RY K++IMTDADVDG+HI +LLLTFF+
Sbjct: 469 ARFDKMLSSAEVGTLITALGTGIGPDEYNPDKIRYHKIVIMTDADVDGSHIRTLLLTFFF 528

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++M +LIE+ H+++  PPL+++ +G + VY  D E     L
Sbjct: 529 RQMPELIERGHIYIAQPPLYKVKRGKQEVYLKDTEALDAYL 569



 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 8/105 (7%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K     D    + + ++     +  +++ R+KGLGEM   QL ET MD   R +L
Sbjct: 723 LRRGDKDFIIKD---FEYLWQQLMLAARRGVDVQRYKGLGEMNKEQLWETTMDPENRRML 779

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           ++ I   +          + LMG + + R  FI+E A   D + T
Sbjct: 780 KITIEDAIK----ADHLFSCLMGDEVEPRRIFIEENALNAD-IDT 819


>gi|298290587|ref|YP_003692526.1| DNA gyrase subunit beta [Starkeya novella DSM 506]
 gi|296927098|gb|ADH87907.1| DNA gyrase, B subunit [Starkeya novella DSM 506]
          Length = 812

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 233/580 (40%), Positives = 337/580 (58%), Gaps = 17/580 (2%)

Query: 29  IPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMD 87
                A    S  ++Y A SI++L GL+ VR RPGMYIG TD+   LHH+  EV+DNA+D
Sbjct: 2   ADSDNAATPSSNGEDYGAQSIQVLRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAID 61

Query: 88  EVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST 147
           E +AGYA+ + V+L+ +G +TV DNGRGIP + H +    S  E+I+T LHAGGKF+ ++
Sbjct: 62  EALAGYADEVTVTLNADGSVTVTDNGRGIPTDIHAE-EGVSAAEVIMTQLHAGGKFNQNS 120

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTR 206
           Y++SGGLHGVG+SVVNALS  L +T+ R       +F  G   +PL  K      +RGT 
Sbjct: 121 YKVSGGLHGVGVSVVNALSTTLDLTIWRNGLEHHIRFRHGDAEAPLAVKGPAPEGRRGTM 180

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           +TF P P  F     FD A L    +  A+L+  V+   +  +    K      EE  + 
Sbjct: 181 VTFVPSPDTFT-HIEFDYATLEHRLRELAFLNSGVRIVLTDARHPEVKR-----EEMMYE 234

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTD 325
           GG++ ++Q    ++  +  +    + EK G     VE A++W +   E    + N I   
Sbjct: 235 GGVEAFVQYLDRSKQALLPKPIVIRAEKDGI---AVECAMSWNDSYHENVLCFTNNIPQR 291

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           + GTH +G   ALTR +  Y+E +    K  +    +D       +LSV + +P+F+ QT
Sbjct: 292 DRGTHFTGFAAALTRQVIGYSERSGIAKKEKVEPTGEDCREGLTAVLSVKVPDPKFSSQT 351

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKT 442
           K KLVS + +  VE  + +    +L ++P E+  L+  V+E +  R   RK RE   RK 
Sbjct: 352 KDKLVSSEVRPVVEALVNEALGSWLEEHPAESKSLVTKVVEAAAAREAARKARELTRRKN 411

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
            +    LPGKLADC +     +ELFIVEGDSAGGSAK  RNR+ QA+LPLRGKILNV  A
Sbjct: 412 PLDVASLPGKLADCQERDPAKSELFIVEGDSAGGSAKMGRNRAFQAILPLRGKILNVERA 471

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
             +K+ +++QI  L+ ALG          + LRY K+IIMTDADVDG+HI +LLLTFF++
Sbjct: 472 RFDKMLSSEQIGTLITALGTGIGRDDFNVDKLRYHKIIIMTDADVDGSHIRTLLLTFFFR 531

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +M DL+++ H+++  PPL+++T+G    Y  DE   +  L
Sbjct: 532 QMPDLLDRGHVYIAQPPLYKVTRGKSEQYLKDERSLEDYL 571



 Score =  114 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 8/96 (8%)

Query: 583 TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLR 642
            +G  ++     +    + +     G+  I + R+KGLGEM A QL ET +D N R+LL+
Sbjct: 718 RKGNDTLVFGPMDLFDAVTDA----GRKGIALQRYKGLGEMNAEQLWETTLDVNARSLLQ 773

Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           V++      + D  D  N+LMG   + R +FIQ+ A
Sbjct: 774 VKV----KEVADADDLFNRLMGDVVEPRREFIQDNA 805


>gi|57236917|ref|YP_178032.1| DNA gyrase subunit B [Campylobacter jejuni RM1221]
 gi|57165721|gb|AAW34500.1| DNA gyrase, B subunit [Campylobacter jejuni RM1221]
          Length = 769

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 249/660 (37%), Positives = 363/660 (55%), Gaps = 50/660 (7%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY AS+I++L+GLE VR RPGMYIG T+   LHH+  EV+DN++DE +AG+ + I+V +
Sbjct: 3   ENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVDNSIDEAMAGHCDTIDVEI 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV+ HP   N  TL ++LT LHAGGKFD  TY++SGGLHGVG+SV
Sbjct: 63  TTEGSCIVSDNGRGIPVDMHP-TENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS +L  TV R   I+ Q+FS G  +S      K +   GT I F PD +IF     
Sbjct: 122 VNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSKK-TGTTIEFWPDDQIFEVT-E 179

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L K  +  AYL+ ++   +  ++       + + E F+F GG+  ++    +  +
Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNR-------VGKHESFHFEGGISQFVIDLNKKEA 232

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340
           L  +  F+   E        VE A+ + +   E   S+ N I T +GGTHE+G R+ LTR
Sbjct: 233 LTKAIFFSVDEED-----VNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTR 287

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  Y E      ++   I  +D+    + ++SV + EP+F GQTK KL S   +  V  
Sbjct: 288 VISNYIEANASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVSK 347

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
           A  +    Y  +NPIEA  ++  V+  +  R   +K RE   +K ++    LPGKLADC 
Sbjct: 348 ASFEYLTKYFEENPIEAKAIMNKVLMAARGREAAKKARELTRKKESLSVGTLPGKLADCQ 407

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +E+++VEGDSAGGSAKQ R RS QA+LPLRGKILNV  A  +KI  ++QI +++
Sbjct: 408 SKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMI 467

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A GC     +    LRY K+IIMTDADVDG+HI +LLLTFF++ M +L+   H++L  P
Sbjct: 468 TAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQP 527

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET------ 631
           PL+   +  K +Y  DE+   + L E    G        ++G+G M    LK+       
Sbjct: 528 PLYLYKKAKKQIYLKDEKALSEYLIETGIEGLN------YEGIG-MND--LKDYLKIVAA 578

Query: 632 ----AMDANKR----TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
                 D  KR    +++R  I        + ++  + +         +F++ +   I +
Sbjct: 579 YRAILKDLEKRFNVISVIRYMIENSNLVKGNNEELFSVI--------KQFLETQGHNILN 630



 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%)

Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
           ++   ++LE+ + + K    I R+KGLGEM   QL ET MD + R LL++ I       +
Sbjct: 681 DKDILEVLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIED----AQ 736

Query: 654 DTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              D+ N  MG + + R  +IQ  A  +  + 
Sbjct: 737 SANDTFNLFMGDEVEPRRDYIQAHAKDVKHLD 768


>gi|326571823|gb|EGE21829.1| DNA gyrase subunit B [Moraxella catarrhalis BC7]
          Length = 819

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 224/581 (38%), Positives = 336/581 (57%), Gaps = 18/581 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85
                +      +    Y A ++R+L GLE VR+RPGMYIG TD+   LHH+  EV+DNA
Sbjct: 1   MTDNTNNHPQVDAQEIEYTAKNVRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNA 60

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AG+ + I + +  +  ++V+DNGRGIPV+ HP+    S  E+I+T LHAGGKFD+
Sbjct: 61  IDEALAGHCDEINIIVHDDESVSVMDNGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDD 119

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +L +T+ R     +Q ++ G+P +PL K E    + GT
Sbjct: 120 NSYKVSGGLHGVGVSVVNALSKKLILTIWRDGYAHTQNYTDGVPDAPLAKLEPST-QTGT 178

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           ++ F P  +IF     FD   L K  +  ++L+  V+   + ++           + F  
Sbjct: 179 QVRFYPSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDER-------TSTTQVFEH 231

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GGL  ++      +  ++           G     VE A+ W +    ++  + N I  
Sbjct: 232 KGGLSEFVSYINGGKHTLNDIFHF---TADGADGIGVEVALQWSDSYNEKVLCFTNNIPQ 288

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH SG R ALTR +  Y +      K  + I  DD       I+SV + +P+F+ Q
Sbjct: 289 KDGGTHLSGFRSALTRCLNHYLDSENITKKEKVQITGDDAREGLTAIISVKVPDPKFSSQ 348

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441
           TK KLVS + +  VE A+ +    YL++NP  A  +   +I+ +  R   RK      RK
Sbjct: 349 TKDKLVSSEVKSVVETAMHERLSEYLLENPTAAKMIASKIIDAARARDAARKAREMTRRK 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR  QA+LPL+GKILNV  
Sbjct: 409 STLDIAGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +K+ ++ ++  L+ ALG      +Y  + +RY K++IMTDADVDG+HI +LLLTFF+
Sbjct: 469 ARFDKMLSSAEVGTLITALGTGIGPDEYNPDKIRYHKIVIMTDADVDGSHIRTLLLTFFF 528

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++M +LIE+ H+++  PPL+++ +G + VY  D E     L
Sbjct: 529 RQMPELIERGHIYIAQPPLYKVKRGKQEVYLKDTEALDAYL 569



 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 8/105 (7%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K     D    + + ++     +  +++ R+KGLGEM   QL ET MD   R +L
Sbjct: 723 LRRGDKDFIIKD---FEYLWQQLMLAARRGVDVQRYKGLGEMNKEQLWETTMDPENRRML 779

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           ++ I   +          + LMG + + R  FI+E A   D + T
Sbjct: 780 KITIEDAIK----ADHLFSCLMGDEVEPRRIFIEENALNAD-IDT 819


>gi|85713968|ref|ZP_01044957.1| DNA gyrase, B subunit [Nitrobacter sp. Nb-311A]
 gi|85699094|gb|EAQ36962.1| DNA gyrase, B subunit [Nitrobacter sp. Nb-311A]
          Length = 813

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 239/567 (42%), Positives = 339/567 (59%), Gaps = 14/567 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            Y A SIR+L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+A  +EV L
Sbjct: 19  EYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHATAVEVIL 78

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +  +TV D+GRGIPV+ H K    S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SV
Sbjct: 79  NADNSVTVRDDGRGIPVDIH-KGEGISAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSV 137

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS +L + + R++     +F+ G  L+PL+       KRGT +TF    + F     
Sbjct: 138 VNALSSKLILRIWRKDKEHLIEFANGDALAPLKVVGDANGKRGTEVTFLASTETFTSV-E 196

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +D A L    +  A+L+  V    S  +   E+      E+  + GG+  +++    N+ 
Sbjct: 197 YDFATLEHRLRELAFLNSGVNILLSDMRHAVERR-----EQMMYEGGVVEFVKYLDRNKK 251

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340
            + ++    + E  G    +VE A+ W +   E    + N I   +GGTH +G R ALTR
Sbjct: 252 AMVADPIMIRAEMNGI---SVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTR 308

Query: 341 GIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
            +  YA+    K  I++  DD       +LSV + +P+F+ QTK KLVS + +  VEN +
Sbjct: 309 QVNGYADAMARKERIALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVI 368

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQN 459
            +    +  ++P EA  ++  V+E +  R   RK RE   RK A+    LPGKLADC + 
Sbjct: 369 NEALAAWFEEHPTEAKLIVGKVVEAAAAREAARKARELTRRKGALDVASLPGKLADCQER 428

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
               +ELFIVEGDSAGGSAKQ RNR  QAVLPLRGKILNV  A  +K+ +++QI  L+ A
Sbjct: 429 DPAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERARFDKMLSSEQIGTLITA 488

Query: 520 LGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           LG     +  +   LRY K+I+MTDADVDGAHI +LLLTFF+++M  LIE  HL++  PP
Sbjct: 489 LGTGIGREDFDLSKLRYHKIIVMTDADVDGAHIRTLLLTFFFRQMPALIEAGHLYIAQPP 548

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFK 605
           L+++T+G    Y  DE   +  L E  
Sbjct: 549 LYKVTRGKSERYLKDERALEDYLIETG 575



 Score =  114 bits (284), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 5/87 (5%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            + E     G+  + + R+KGLGEM   QL ET +DA +R+LL+V+I      + +  D 
Sbjct: 731 SLFEAVTDAGRKGVALQRYKGLGEMNPDQLWETTLDAGERSLLQVKI----KEVDEADDI 786

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R +FIQ+ +    +V 
Sbjct: 787 FTKLMGDVVEPRREFIQDNSLSA-NVD 812


>gi|162606284|ref|XP_001713657.1| DNA gyrase subunit B [Guillardia theta]
 gi|13794577|gb|AAK39952.1|AF165818_160 DNA gyrase subunit B [Guillardia theta]
          Length = 684

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 238/650 (36%), Positives = 353/650 (54%), Gaps = 29/650 (4%)

Query: 49  IRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLT 108
           I +LEGLEPVR RPG++IG T  K  HHL  E++DN++DE +AG+   ++V ++ +  +T
Sbjct: 49  ITVLEGLEPVRRRPGVFIGSTGLKGFHHLVYEIVDNSVDESMAGFCEKVDVIINSDKSVT 108

Query: 109 VVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDE 168
           + DNGRGIP + HP   NK+ LE +LT LHAGGKF    Y++SGGLHGVG+SVVN LS+ 
Sbjct: 109 IRDNGRGIPTDLHP-ITNKTALETVLTILHAGGKFGGGGYKVSGGLHGVGVSVVNGLSEY 167

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKE-KVRNKRGTRITFRPDPKIFGDKAGFDAARL 227
           L++   R       +F RG  +S       K     GT I F+PD +IF  +  FD+  +
Sbjct: 168 LNINTQRNQRKIGMRFVRGKKISECNISSFKKNIINGTTINFKPDYQIFFSEFDFDSYVI 227

Query: 228 LKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEI 287
                  A+L+  +K      +    K        F   GG+  Y+     N+  + + I
Sbjct: 228 GGRLNELAFLNSNLKLLLEDRRSKIIKS-----SLFLHDGGIMEYINEMTINKKRLHNPI 282

Query: 288 FTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
              K       +  + +  +  +    I S+ N I T EGGTH  G +  +T+ +   ++
Sbjct: 283 ILSKIFNN--SQIEIGFVWSSEQYQENILSFVNNIRTVEGGTHVDGFKQGITKLVNLLSK 340

Query: 348 LTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF- 404
                +    SI  + +      +++V   EPEF GQ K+KL + D +  VEN +++   
Sbjct: 341 KKIKSKEKLNSISGEFIREGLTCLINVKTSEPEFEGQIKSKLGNPDIKFLVENLIKEEGE 400

Query: 405 DHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHG 463
            H++  N      +LE  I         +K +E V +K+ +  + LPGKL+DCS+     
Sbjct: 401 IHFIENNSNLLNIVLEKAISAMNAYEASKKAKELVRKKSILEGITLPGKLSDCSEKNPQF 460

Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523
           +E+FIVEGDSAGGSAKQAR+R  QA+LPLRGKI+N+     +KI NN +I  L+ ALG  
Sbjct: 461 SEIFIVEGDSAGGSAKQARDRRFQAILPLRGKIINIEKNDEKKIYNNTEIQSLISALGLG 520

Query: 524 TRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI 582
            R    +  +LRY K+IIMTDADVDGAHI +LLLTFFY+   +LI++  +++  PPL++I
Sbjct: 521 VRGNDEDLSNLRYHKIIIMTDADVDGAHIRTLLLTFFYRYQKELIDKGFVYIACPPLYKI 580

Query: 583 T------QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
                      + Y + E   + I++    +      I RFKGLGEM+  QL +T M   
Sbjct: 581 ENKKNKNLDKNTQYCYSEGELEYIIQSSHFNK----NIQRFKGLGEMMPEQLWKTTMSPE 636

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
            R L +++++      K        LMG+K  ER KFIQ +AS I  + +
Sbjct: 637 MRILKKIKLSD----AKRADKIFEVLMGSKVPERKKFIQIQASLIK-IDS 681


>gi|299065057|emb|CBJ36218.1| DNA gyrase, subunit B (type II topoisomerase) [Ralstonia
           solanacearum CMR15]
          Length = 842

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 229/594 (38%), Positives = 344/594 (57%), Gaps = 36/594 (6%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIA 91
              +  + S +Y A+SI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +A
Sbjct: 6   KPQSTPAESSSYGAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALA 65

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTY 148
           G+   I V++  +  ++V+DNGRGIP          P +S  EI++T LHAGGKFD ++Y
Sbjct: 66  GHCTEIHVTIHTDNSISVIDNGRGIPTGIKFDDKHEPKRSAAEIVMTELHAGGKFDQNSY 125

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP---------------- 192
           ++SGGLHGVG+S VN LS  L +TV R   + + +F+RGIP +                 
Sbjct: 126 KVSGGLHGVGVSCVNGLSKWLKLTVRRDGKVHNMEFARGIPQNRLLEQAEAPDGKMVEVS 185

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
             +     +KRGT + F  D +IF +   +    L K  +  ++L+  V    +  +   
Sbjct: 186 PLRMSGTTDKRGTEVHFLADEEIFTNV-EYHYEILSKRIRELSFLNNGVHIKLTDQR--- 241

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-E 311
                 ++E F F GG+K +++   +N+S++   IF    EK G     VE ++ W +  
Sbjct: 242 ----TGKEENFAFSGGVKGFVEYINKNKSVLHPTIFYATGEKDGV---GVEVSMQWNDGF 294

Query: 312 NPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369
           N ++  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +
Sbjct: 295 NEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCV 354

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           LSV + EP+F+ QTK KLVS + +  VE  +    + +L++ P +A  +   ++E +  R
Sbjct: 355 LSVKVPEPKFSSQTKDKLVSSEVRLPVEEIVSKVLNDFLLETPNDAKIICGKIVEAARAR 414

Query: 430 LRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
              RK RE+ R+   +  + LPGKLADC +     +ELFIVEGDSAGGSAKQ R+R  QA
Sbjct: 415 EAARKAREMTRRKGVLDGMGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQA 474

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVD 547
           +LPL+GKILNV  A  +K+ ++Q+++ L+ A+G          + LRY ++IIMTDADVD
Sbjct: 475 ILPLKGKILNVERARFDKMLSSQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVD 534

Query: 548 GAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           G+HI +LLLTFFY++M ++IE+ H+++  PPL++I  G +  Y  D+      L
Sbjct: 535 GSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYKIKHGKEERYIKDDNEMAAYL 588



 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 9/108 (8%)

Query: 581 RITQG---TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           ++ +G    +   A  +      +       +  I   R+KGLGEM   QL ET MD  +
Sbjct: 740 KVRRGTGDKQREQAVTD--FHAAITWLLAEAERGISRQRYKGLGEMNPEQLWETTMDVTQ 797

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           R LL+V+I   +            LMG   + R  FI+  A    ++ 
Sbjct: 798 RRLLKVQIEDAI----AADQIFTTLMGDDVEPRRNFIETNALVARNID 841


>gi|237806780|ref|YP_002891220.1| DNA gyrase, B subunit [Tolumonas auensis DSM 9187]
 gi|237499041|gb|ACQ91634.1| DNA gyrase, B subunit [Tolumonas auensis DSM 9187]
          Length = 805

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 231/575 (40%), Positives = 346/575 (60%), Gaps = 18/575 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
           + + YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I 
Sbjct: 2   SENTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVMDNSIDETLAGHCTDIV 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
             +  +G ++V DNGRGIPV+ H K   +S  E+I+T LHAGGKFD+++Y++SGGLHGVG
Sbjct: 62  ARIHEDGSVSVRDNGRGIPVDMH-KEEGRSAAEVIMTILHAGGKFDDNSYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALSD+L +T+ R   I+ Q +  G P +PL          GT I F P   IF D
Sbjct: 121 VSVVNALSDKLLLTIQRNGNIYQQTYFLGEPDAPLAIIGTCEG-TGTEIRFWPSLSIFSD 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L +  +  ++L+  V      +++  E       + F++ GG++ +++   +
Sbjct: 180 VT-FRYEILARRFRELSFLNSGVSIRLIDERDGRE-------DHFHYEGGIRAFVEYLNQ 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ I  + F     ++     +VE A+ W +     +  + N I   +GGTH +G R A
Sbjct: 232 NKTPIHQKAFYFDLARED--GISVEVAMQWNDAYQENVYCFTNNIPQRDGGTHLAGFRSA 289

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y +      K   S   DD       ++SV + +P+F+ QTK KLVS + +  
Sbjct: 290 LTRTLNTYMDKEGYSKKAKTSASGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTA 349

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454
           VE A+ +  D YL++NP EA  ++  +I+ +  R   RK R    RK A+    LPGKLA
Sbjct: 350 VEQAMGEKLDEYLLENPGEAKIIVGKIIDAARAREAARKAREMTRRKGALDIAGLPGKLA 409

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++ 
Sbjct: 410 DCQERDPALSELYLVEGDSAGGSAKQGRNRKYQAILPLKGKILNVEKARFDKMISSQEVG 469

Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            L+ ALGC   R +Y  + +RY  VIIMTDADVDGAHI +LLLTFFY++M ++IE+ +++
Sbjct: 470 TLITALGCGIGRDEYNPDKMRYHNVIIMTDADVDGAHIRTLLLTFFYRQMPEIIERGYVY 529

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +  PPL+++ +G +  Y  DEE   +        G
Sbjct: 530 IAQPPLYKVKKGKQEQYIKDEESLLEYQTTLALDG 564



 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K          ++ L+     GK  + I R+KGLGEM   QL ET MD   R +L
Sbjct: 708 LKRGEKVRPVTS---FEEALQILLDEGKRGLYIQRYKGLGEMNPEQLWETTMDPMTRRML 764

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG   + R  FI+  A  + ++ 
Sbjct: 765 QVTIEDGM----AADQLFATLMGDNVEPRRAFIESNALKVANLD 804


>gi|161523183|ref|YP_001578195.1| DNA gyrase subunit B [Burkholderia multivorans ATCC 17616]
 gi|189348956|ref|YP_001944584.1| DNA gyrase subunit B [Burkholderia multivorans ATCC 17616]
 gi|221201812|ref|ZP_03574849.1| DNA gyrase, B subunit [Burkholderia multivorans CGD2M]
 gi|221207682|ref|ZP_03580690.1| DNA gyrase, B subunit [Burkholderia multivorans CGD2]
 gi|221214572|ref|ZP_03587542.1| DNA gyrase, B subunit [Burkholderia multivorans CGD1]
 gi|160340612|gb|ABX13698.1| DNA gyrase, B subunit [Burkholderia multivorans ATCC 17616]
 gi|189332978|dbj|BAG42048.1| DNA gyrase subunit B [Burkholderia multivorans ATCC 17616]
 gi|221165462|gb|EED97938.1| DNA gyrase, B subunit [Burkholderia multivorans CGD1]
 gi|221172528|gb|EEE04967.1| DNA gyrase, B subunit [Burkholderia multivorans CGD2]
 gi|221178232|gb|EEE10642.1| DNA gyrase, B subunit [Burkholderia multivorans CGD2M]
          Length = 824

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 236/594 (39%), Positives = 342/594 (57%), Gaps = 33/594 (5%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94
            +Q  + +Y ASSI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +AGY 
Sbjct: 6   NSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYC 65

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVE--NHPKFP-NKSTLEIILTTLHAGGKFDNSTYEIS 151
           N I V++  +  ++VVDNGRGIP +   + K    +S  EI++T LHAGGKFD ++Y++S
Sbjct: 66  NDIHVTIHADNSISVVDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQNSYKVS 125

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKV 199
           GGLHGVG+S VNALS  L +TV R       +F RG+             +SP++     
Sbjct: 126 GGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQDRVIEVVDGEEVSPMQVIGDT 185

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            N RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E      
Sbjct: 186 EN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD---- 239

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              F F GG+K +++   + +S +   IF    EK G     VE A+ W +     +  +
Sbjct: 240 ---FAFAGGVKGFVEYINKTKSNLHPTIFHVIGEKDGV---GVEVAMQWNDSYNENVLCF 293

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + E
Sbjct: 294 TNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETTGDDMREGLSCVLSVKVPE 353

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F+ QTK KLVS + +  VE  +    + +L++ P +A  +   ++E +  R   RK R
Sbjct: 354 PKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKAR 413

Query: 437 EVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E+ R+   +  + LPGKLADC +     +E++IVEGDSAGGSAKQ R+R  QA+LPLRGK
Sbjct: 414 EMTRRKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGK 473

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASL 554
           +LNV  A  +K+ +++QI+ LV ALGC         + LRY ++IIMTDADVDGAHI +L
Sbjct: 474 VLNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTL 533

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           LLTFFY++M ++IE+ ++++  PPL+++  G    Y  D+      +      G
Sbjct: 534 LLTFFYRQMPEMIERGYVYIAQPPLYKVKAGKDERYLKDDAELNAHMLRLALQG 587



 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             +  ++      +  +   R+KGLGEM   QL ET MD N R LLRV+I   +      
Sbjct: 738 DFKNAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMDPNVRRLLRVQIEDAI----AA 793

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
                 LMG + + R  FI+  A    ++ 
Sbjct: 794 DGIFTTLMGDEVEPRRAFIESNALRAGNID 823


>gi|46201803|ref|ZP_00054300.2| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), B subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 638

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 313/568 (55%), Positives = 417/568 (73%), Gaps = 4/568 (0%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
             +  Y A  I +LEGLEPVR RPGMYIGGTD++ALHHL +EV+DN+MDE +AG+A  IE
Sbjct: 10  PKATEYSAKDIEVLEGLEPVRRRPGMYIGGTDDRALHHLVAEVLDNSMDEAVAGHAGWIE 69

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           + L  +G  TV DNGRGIPV+ HPK+P+KS LE+ILTTLH+GGKF    Y++SGGLHGVG
Sbjct: 70  LELAVDGTCTVRDNGRGIPVDPHPKYPDKSALEVILTTLHSGGKFGGDAYKVSGGLHGVG 129

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALSD + V VAR   ++SQ+FSRG+PL PLEK   V+N+RGT + F PD +IFG+
Sbjct: 130 VSVVNALSDAMTVEVARDRVLWSQRFSRGLPLGPLEKVGPVQNRRGTTVIFHPDAQIFGE 189

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +A      L +M +SKAYL   V+  W CD   I +   IP ++  +FPGGL  +L+  L
Sbjct: 190 RAQLRPGPLYRMARSKAYLFRGVQIRWKCDPLLIKDGDEIPAEDTLHFPGGLTDFLKAVL 249

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT--SYCNTILTDEGGTHESGLR 335
           + R L++ ++F G         G +EWA+AW +++ E    +YCNT+ T EGGTHE+G R
Sbjct: 250 KERPLVTKDVFNGTAPLSDDM-GQLEWAVAWPDDDEEGFVNTYCNTVPTPEGGTHEAGFR 308

Query: 336 VALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            ALT+G++ Y E+  NK+A  I ++D+M+ A  ++S+FIR+P+F GQTK KL S +A R 
Sbjct: 309 NALTKGLRAYGEMAGNKKAGQITAEDVMVGACVMVSLFIRDPQFQGQTKEKLASPEATRL 368

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           VENA++D FDH+L  +   A  LL  +IE++E+R RRR+ +E+NRKT  ++LRLPGKLAD
Sbjct: 369 VENAVKDHFDHWLSGDKASAAALLTRLIEKAEDRARRRQAKEMNRKTPTKRLRLPGKLAD 428

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS+++  GTELF+VEGDSAGGSAK  RNR  QA+LPLRGKILNVASA ++K+R NQ++ D
Sbjct: 429 CSRSVNVGTELFLVEGDSAGGSAKSGRNRETQAILPLRGKILNVASASTDKLRQNQELKD 488

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           L++ALGC  R  Y +E LRYEK+IIMTDADVDGAHIASLL+TFFYQEM DLI   HL+L 
Sbjct: 489 LMEALGCGARDSYDDEKLRYEKIIIMTDADVDGAHIASLLMTFFYQEMPDLIRNGHLYLA 548

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEE 603
            PPL+R+  G   +Y  D+ HK+++L+ 
Sbjct: 549 LPPLYRLAHGQTVIYGRDDAHKEELLKT 576


>gi|307746967|gb|ADN90237.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni M1]
 gi|315931303|gb|EFV10272.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 327]
          Length = 769

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 248/660 (37%), Positives = 362/660 (54%), Gaps = 50/660 (7%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY AS+I++L+GLE VR RPGMYIG T+   LHH+  EV+DN++DE +AG+ + I+V +
Sbjct: 3   ENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVDNSIDEAMAGHCDTIDVEI 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV+ HP   N  TL ++LT LHAGGKFD  TY++SGGLHGVG+SV
Sbjct: 63  TTEGSCIVSDNGRGIPVDMHP-TENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS +L  TV R   I+ Q+FS G  +S      K +   GT I F PD +IF     
Sbjct: 122 VNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSKK-TGTTIEFWPDDQIFEVT-E 179

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L K  +  AYL+ ++   +  ++       + + E F+F GG+  ++    +  +
Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNR-------VGKHESFHFEGGISQFVTDLNKKEA 232

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340
           L  +  F+   E        VE A+ + +   E   S+ N I T +GGTHE+G R+ LTR
Sbjct: 233 LTKAIFFSVDEED-----VNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTR 287

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  Y E      ++   I  +D+    + ++SV + EP+F GQTK KL S   +  V  
Sbjct: 288 VISNYIEANASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVSK 347

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
           A  +    Y  +NPIEA  ++   +  +  R   +K RE   +K ++    LPGKLADC 
Sbjct: 348 ASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQ 407

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +E+++VEGDSAGGSAKQ R RS QA+LPLRGKILNV  A  +KI  ++QI +++
Sbjct: 408 SKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMI 467

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A GC     +    LRY K+IIMTDADVDG+HI +LLLTFF++ M +L+   H++L  P
Sbjct: 468 TAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQP 527

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET------ 631
           PL+   +  K +Y  DE+   + L E    G        ++G+G M    LK+       
Sbjct: 528 PLYLYKKAKKQIYLKDEKALSEYLIETGIEGLN------YEGIG-MND--LKDYLKIVAA 578

Query: 632 ----AMDANKR----TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
                 D  KR    +++R  I        + ++  + +         +F++ +   I +
Sbjct: 579 YRAILKDLEKRFNVISVIRYMIENSNLVKGNNEELFSVI--------KQFLETQGHNILN 630



 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%)

Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
           ++   ++LE+ + + K    I R+KGLGEM   QL ET MD + R LL++ I       +
Sbjct: 681 DKDILEVLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIED----AQ 736

Query: 654 DTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              D+ N  MG + + R  +IQ  A  +  + 
Sbjct: 737 SANDTFNLFMGDEVEPRRDYIQAHAKDVKHLD 768


>gi|313681133|ref|YP_004058871.1| DNA gyrase subunit b [Sulfuricurvum kujiense DSM 16994]
 gi|313153993|gb|ADR32671.1| DNA gyrase subunit B [Sulfuricurvum kujiense DSM 16994]
          Length = 771

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 226/565 (40%), Positives = 334/565 (59%), Gaps = 16/565 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY AS+I++L+GLE VR RPGMYIG T  + LHHL  EV+DN++DE +AG+ + I V+L
Sbjct: 2   ENYGASNIKVLKGLEAVRKRPGMYIGDTGHRGLHHLIYEVVDNSIDEAMAGHCDTITVTL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             NG   V DNGRGIP + HP     S   ++LT LHAGGKFD  TY++SGGLHGVG+SV
Sbjct: 62  TKNGTAIVSDNGRGIPTDMHP-TEGISAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS +L +T+ R+   F Q F  GIP  PL      R +  T I F PDP IF +   
Sbjct: 121 VNALSSDLKMTIHREGQSFEQNFKCGIPQEPLAITGTTRKRG-TTIEFFPDPSIFTETII 179

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L K  +  AYL+ R+   +  ++  A          ++F GG+  ++    + ++
Sbjct: 180 FDYDYLAKRFRELAYLNPRITIIFKDERNGASNT-------YHFEGGISQFVTDVNK-KT 231

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
           +++S     +  +       + +  ++ ++     ++ N I T  GGTHE+G R  LTR 
Sbjct: 232 VVASPFAFSEKIEDIEMDIAIMYNDSYDDK---TFTFVNNINTPNGGTHEAGFRAGLTRV 288

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  Y +      ++ + +  +D+    + ++SV + EP+F GQTK KL +   +  V+  
Sbjct: 289 ISNYNKQNGNAKEKDVPLTGEDVSEGLICVVSVRVPEPQFEGQTKGKLGNTYVRPLVQKV 348

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
             +    Y  +NP++A  +++  +  +  R   +K RE   RK A+    LPGKLADC  
Sbjct: 349 TYEKLTKYFEENPLQAKAIVQKALMAARGREAAKKARELTRRKDAMTVGTLPGKLADCQS 408

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +KI  +++I +++ 
Sbjct: 409 KDPAISELYLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKARLDKILKSEEITNMIT 468

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALGC    ++ EE LRY K+IIMTDADVDG+HI +LLLTFF++ +  ++E  +L+L  PP
Sbjct: 469 ALGCGIGEEFNEEKLRYHKIIIMTDADVDGSHIQTLLLTFFFRYLPKIVENGYLYLAQPP 528

Query: 579 LFRITQGTKSVYAHDEEHKQKILEE 603
           L+R  +G K +Y  D+      L E
Sbjct: 529 LYRYKKGKKEIYFKDDRVMNAFLIE 553



 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 4/92 (4%)

Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
           E    ++L +   + K    I R+KGLGEM   QL ET M    R LLR+ I     + +
Sbjct: 683 EGDLLELLTQITDYAKKGSYIQRYKGLGEMNPEQLWETTMTPENRVLLRITIEDAETAGE 742

Query: 654 DTQDSINKLMGTKADERFKFIQERASFIDDVG 685
                 N  MG   + R  +I+  A  +  + 
Sbjct: 743 S----FNLFMGDDVEPRRNYIETHAKDVKHLD 770


>gi|256821232|ref|YP_003145195.1| DNA gyrase subunit B [Kangiella koreensis DSM 16069]
 gi|256794771|gb|ACV25427.1| DNA gyrase, B subunit [Kangiella koreensis DSM 16069]
          Length = 808

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 226/580 (38%), Positives = 351/580 (60%), Gaps = 17/580 (2%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S +++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I
Sbjct: 2   SENNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V++  +  ++V DNGRGIP E H +    S  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  YVTIHSDNSVSVRDNGRGIPTEMHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+EL +T+ R    + Q +  G+P +PLE         GT I F+P  K F 
Sbjct: 121 GVSVVNALSEELKLTIRRAGKRYEQIYVHGVPQAPLEVVGDA-ETTGTEIRFKPSDKTFT 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   +    L K  +  ++L+  V    + ++         +++ F + GG+K +++   
Sbjct: 180 NT-EYHYDILAKRLRELSFLNSGVGIRLADERS-------GKQDHFMYEGGIKAFVEYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
             ++ I  ++F    E++     TVE A+ W +     I  + N I   +GGTH +G R 
Sbjct: 232 SKKTPIHEKVFHFTHERE-EDGVTVEVAMQWNDGFQESIFCFTNNIPQRDGGTHLAGFRA 290

Query: 337 ALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTRG+  + E      K  ++   DD       ++SV + +P+F+ QTK KLVS + + 
Sbjct: 291 ALTRGLNNFMENEGYNKKGKVNTTGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKT 350

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE A+ +    +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPGKL
Sbjct: 351 AVEQAMGEHLKDFLLENPGEAKSVVNKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 410

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL+IVEGDSAGGSAKQ R+R NQA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 411 ADCQEKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSQEV 470

Query: 514 MDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC    +  + +  RY ++IIMTDADVDGAHI +LLLTFFY+++  LIE+ ++
Sbjct: 471 GTLITALGCGIGREEFDADKTRYHRIIIMTDADVDGAHIRTLLLTFFYRQVPQLIERGYI 530

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612
           ++  PPL+++ +G +  Y  D++  +  L +   +     
Sbjct: 531 YIAQPPLYKVKKGKQEQYLKDDDALENYLTQTALNNTELY 570



 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K       E  ++ L+      +    I R+KGLGEM   QL ET MD   R +L
Sbjct: 711 VKRGEKIQEI---ESFKEALDWLMSEARRGQAIQRYKGLGEMNPGQLWETTMDPAGRRML 767

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R +FI+  A  + ++ 
Sbjct: 768 QVTIEDAV----AADQLFTTLMGDQVEPRREFIENNALSVSNLD 807


>gi|153951349|ref|YP_001397276.1| DNA gyrase subunit B [Campylobacter jejuni subsp. doylei 269.97]
 gi|152938795|gb|ABS43536.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. doylei 269.97]
          Length = 769

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 247/660 (37%), Positives = 362/660 (54%), Gaps = 50/660 (7%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY AS+I++L+GLE VR RPGMYIG T+   LHH+  EV+DN++DE +AG+ + I+V +
Sbjct: 3   ENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVDNSIDEAMAGHCDTIDVEI 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV+ HP   N  TL ++LT LHAGGKFD  TY++SGGLHGVG+SV
Sbjct: 63  TTEGSCIVSDNGRGIPVDMHP-TENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS +L  TV R   I+ Q+FS G  +S      K +   GT I F PD +IF     
Sbjct: 122 VNALSKKLVATVERNKEIYRQEFSEGKVISEFGVIGKSKK-TGTTIEFWPDDQIFEVT-E 179

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L K  +  AYL+ ++   +  ++       + + E F+F GG+  ++    +  +
Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNR-------VGKHESFHFEGGISQFVTDLNKKEA 232

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340
           L  +  F+   E        VE A+ + +   E   S+ N I T +GGTHE+G R+ LTR
Sbjct: 233 LTKAIFFSVDEED-----VNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTR 287

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  Y E      ++   I  +D+    + ++SV + EP+F GQTK KL S   +  V  
Sbjct: 288 VISNYIEANASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVSK 347

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
           A  +    Y  +NP+EA  ++   +  +  R   +K RE   +K ++    LPGKLADC 
Sbjct: 348 ASFEYLTKYFEENPVEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQ 407

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +E+++VEGDSAGGSAKQ R RS QA+LPLRGKILNV  A  +KI  ++QI +++
Sbjct: 408 SKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMI 467

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A GC     +    LRY K+IIMTDADVDG+HI +LLLTFF++ M +L+   H++L  P
Sbjct: 468 TAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQP 527

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET------ 631
           PL+   +  K +Y  DE+   + L E    G        ++G+G M    LK+       
Sbjct: 528 PLYLYKKAKKQIYLKDEKALSEYLIETGIEGLN------YEGIG-MND--LKDYLKIVAA 578

Query: 632 ----AMDANKR----TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
                 D  KR    +++R  I        + ++  + +         +F++ +   I +
Sbjct: 579 YRAILKDLEKRFNVISVIRYMIENSNLVKGNNEELFSVI--------KQFLETQGHNILN 630



 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%)

Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
           ++   ++LE+ + + K    I R+KGLGEM   QL ET MD + R LL++ I       +
Sbjct: 681 DKDILEVLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIED----AQ 736

Query: 654 DTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              D+ N  MG + + R  +IQ  A  +  + 
Sbjct: 737 SANDTFNLFMGDEVEPRRDYIQVHAKDVKHLD 768


>gi|86153959|ref|ZP_01072161.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|85842497|gb|EAQ59710.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni HB93-13]
          Length = 769

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 248/660 (37%), Positives = 362/660 (54%), Gaps = 50/660 (7%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY AS+I++L+GLE VR RPGMYIG T+   LHH+  EV+DN++DE +AG+ + I+V +
Sbjct: 3   ENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVDNSIDEAMAGHCDTIDVEI 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV+ HP   N  TL ++LT LHAGGKFD  TY++SGGLHGVG+SV
Sbjct: 63  TTEGSCIVSDNGRGIPVDMHP-TENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS +L  TV R   I+ Q+FS G  +S      K +   GT I F PD +IF     
Sbjct: 122 VNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSKK-TGTTIEFWPDDQIFEVT-E 179

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L K  +  AYL+ ++   +  ++       + + E F+F GG+  ++    +  +
Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNR-------VGKHESFHFEGGISQFVIDLNKKEA 232

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340
           L  +  F+   E        VE A+ + +   E   S+ N I T +GGTHE+G R+ LTR
Sbjct: 233 LTKAIFFSVDEED-----VNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTR 287

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  Y E      ++   I  +D+    + ++SV + EP+F GQTK KL S   +  V  
Sbjct: 288 VISNYIEANASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVSK 347

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
           A  +    Y  +NPIEA  ++   +  +  R   +K RE   +K ++    LPGKLADC 
Sbjct: 348 ASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQ 407

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +E+++VEGDSAGGSAKQ R RS QA+LPLRGKILNV  A  +KI  ++QI +++
Sbjct: 408 SKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMI 467

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A GC     +    LRY K+IIMTDADVDG+HI +LLLTFF++ M +L+   H++L  P
Sbjct: 468 TAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQP 527

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET------ 631
           PL+   +  K +Y  DE+   + L E    G        ++G+G M    LK+       
Sbjct: 528 PLYLYKKAKKQIYLKDEKALSEYLIETGIEGLN------YEGIG-MND--LKDYLKIVAA 578

Query: 632 ----AMDANKR----TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
                 D  KR    +++R  I        + ++  + +         +F++ +   I +
Sbjct: 579 YRAILKDLEKRFNVISVIRYMIENSNLVKGNNEELFSVI--------KQFLETQGHNILN 630



 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%)

Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
           ++   ++LE+ + + K    I R+KGLGEM   QL ET MD + R LL++ I       +
Sbjct: 681 DKDILEVLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIED----AQ 736

Query: 654 DTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              D+ N  MG + + R  +IQ  A  +  + 
Sbjct: 737 SANDTFNLFMGDEVEPRRDYIQAHAKDVKHLD 768


>gi|94311457|ref|YP_584667.1| DNA topoisomerase IV subunit B [Cupriavidus metallidurans CH34]
 gi|93355309|gb|ABF09398.1| DNA topoisomerase IV, subunit B [Cupriavidus metallidurans CH34]
          Length = 690

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 242/688 (35%), Positives = 351/688 (51%), Gaps = 37/688 (5%)

Query: 20  SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79
                ++   P + + A++++   Y  SSIR+L+GLEPV+ RPGMY   T      H+  
Sbjct: 12  PAADGRASHFPQNDSMASKTS--QYSESSIRVLKGLEPVKQRPGMY---TRTDNPLHVVQ 66

Query: 80  EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139
           EVIDNA DE + GY   I V+L  +G ++V D+GRGIPV  HP+      +EI+ T LHA
Sbjct: 67  EVIDNASDEALGGYGTEILVTLHRDGSISVEDDGRGIPVGIHPE-EQVPVVEIVFTRLHA 125

Query: 140 ---GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL--- 193
                K     Y  SGGLHGVG+SV NAL+  L VTV R   + +  F  G  ++     
Sbjct: 126 GGKFDKGKGGAYAFSGGLHGVGVSVTNALATRLDVTVWRDGAVSTLTFEHGGEVTRPLAT 185

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
            K E+   K GTR+   PD K F   A    A L ++ +SKA L   VK     +K   +
Sbjct: 186 RKIERGEKKSGTRVQVWPDAKYFDS-AAIPMAELQRLLRSKAVLLPGVKVTLVLEKTGEQ 244

Query: 254 KYGIPEKEEFYF------PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307
                E+    +       G     +    E       +   G+         +   A  
Sbjct: 245 TVWQYEQGLKGYLVEALAQGSGAELVIPMFEGEHFADPDKNAGEEGFAEGEGASWVVAWT 304

Query: 308 WCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISA 366
             E  P   SY N I T  GGTHESGLR  L   +K + E+     + + ++S+D+   A
Sbjct: 305 -EEGAPVRESYVNLIPTPAGGTHESGLREGLFLAVKSFIEMHSLQPKGVKLMSEDVFARA 363

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             +LS  + +P+F GQ K +L S DA R V    R   + +L  +     KL E VI ++
Sbjct: 364 SFVLSAKVLDPQFQGQIKERLNSRDAVRLVSTFSRPALELWLNHHVDFGKKLAELVIRQA 423

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
           + R R  ++ E  + + +  L  PGKL DC        E+F+VEGDSAGGSAK  R++  
Sbjct: 424 QARTRAAQKVEKKKGSGVAVL--PGKLTDCESTDVERNEIFLVEGDSAGGSAKMGRDKEF 481

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTD 543
           QA+LPLRGK+LN      +++  N ++ D+  A+G        E D   LRY K+ I++D
Sbjct: 482 QAILPLRGKVLNTWETERDRLFANNEVHDIAVAIGVDPHGPDDEPDLSNLRYGKICILSD 541

Query: 544 ADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHK 597
           ADVDGAHI  LLLT F++    L+   ++ +  PPLFR+    +G K    +YA DE   
Sbjct: 542 ADVDGAHIQVLLLTLFFRHFPKLMANGNVCVARPPLFRVDAPARGKKPAQKLYALDEGEL 601

Query: 598 QKILEEFKKHG--KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
           + I ++  K G  +G  +ISRFKGLGEM A QL ET M+ + R LL V +      +  T
Sbjct: 602 EAIQDKLLKDGVKEGAWQISRFKGLGEMSAGQLWETTMNPDTRRLLPVSL--GEFDMPQT 659

Query: 656 QDSINKLMGT-KADERFKFIQERASFID 682
              +N LMG  +A +R  +++E+ + ++
Sbjct: 660 VTMMNMLMGKGEASQRRSWLEEKGNEVE 687


>gi|167644129|ref|YP_001681792.1| DNA gyrase subunit B [Caulobacter sp. K31]
 gi|167346559|gb|ABZ69294.1| DNA gyrase, B subunit [Caulobacter sp. K31]
          Length = 830

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 233/611 (38%), Positives = 348/611 (56%), Gaps = 29/611 (4%)

Query: 14  PQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-K 72
           PQ   S ++         S   A +  + +Y A SI++L+GL+ VR RPGMYIG TD+  
Sbjct: 8   PQDDTSGDR---LTTADGSEMAAPEVMTGDYSADSIKVLKGLDAVRKRPGMYIGDTDDGS 64

Query: 73  ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
            LHH+  EV+DNA+DE +AG+A  +EV L+ +G +TV D+GRGIPV+ H +    S  E+
Sbjct: 65  GLHHMVYEVVDNAIDEALAGHATKVEVILNADGSVTVTDDGRGIPVDIH-EGEGVSAAEV 123

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
           I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALSD L + + R    +  +F RG  ++ 
Sbjct: 124 IMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLELKIHRNGHSYQMRFERGDAVTS 183

Query: 193 LEKKEKV----------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
           L +                  GT +TF P  + F     FD   L    +  A+L+  V 
Sbjct: 184 LAQTGDSPVRADGPKAGTTLTGTEVTFYPSLETFA-FIEFDRKTLEHRLRELAFLNSGVT 242

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
             +   ++       P +E+ ++ GG++ +++   + ++ +       +  K       V
Sbjct: 243 IYFRDLRDA-----EPWEEKLHYEGGIEAFVRHLDKAKTPLLKMPIVIRGRKDKV---EV 294

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359
           + A+ W +     +  + N I   +GGTH S  R ALTR I  YAE +    K  +++  
Sbjct: 295 DLALWWNDSYHEHMLCFTNNIPQRDGGTHLSAFRGALTRIITNYAESSGITKKEKVNVGG 354

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           +D       +LSV + +P+F+ QTK KLVS + +  VE  +++    +  ++P EA  ++
Sbjct: 355 EDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGLVQEGLASWFEEHPNEAKAIV 414

Query: 420 EWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
             + E +  R   RK RE   RK+A+    LPGKLADCS+     +E+FIVEGDSAGGSA
Sbjct: 415 SKIAEAAAAREAARKARELTRRKSALDITSLPGKLADCSERDPAKSEIFIVEGDSAGGSA 474

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEK 537
           KQARNR NQAVLPLRGKILNV  A  +K+ ++ QI  L+ ALG          + +RY K
Sbjct: 475 KQARNRDNQAVLPLRGKILNVERARFDKMLSSDQIGTLITALGAGIGRDDFNADKVRYHK 534

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           +++MTDADVDGAHI +LLLTFFY++M +LIE+ ++++  PPL++  +G  S Y  D+   
Sbjct: 535 IVLMTDADVDGAHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKAAKGKSSRYLKDDFEM 594

Query: 598 QKILEEFKKHG 608
              L +    G
Sbjct: 595 DAFLVDEGVDG 605



 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 4/84 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L      G+  + I R+KGLGEM   QL ET +D   RTLL+V +N       D  D 
Sbjct: 748 DLLGAVLDAGRKGLSIQRYKGLGEMNPDQLWETTLDVEARTLLQVRVNH----ADDADDM 803

Query: 659 INKLMGTKADERFKFIQERASFID 682
            ++LMG   + R +FIQE A   +
Sbjct: 804 FSRLMGDLVEPRREFIQENALDAE 827


>gi|291612475|ref|YP_003522632.1| DNA gyrase, B subunit [Sideroxydans lithotrophicus ES-1]
 gi|291582587|gb|ADE10245.1| DNA gyrase, B subunit [Sideroxydans lithotrophicus ES-1]
          Length = 809

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 231/582 (39%), Positives = 341/582 (58%), Gaps = 33/582 (5%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           SDNYD SSI+ LEGLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ + I+V
Sbjct: 2   SDNYDESSIQQLEGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEALAGHCDDIKV 61

Query: 100 SLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
            + G+  ++V DNGRGIP+         P +S  EI+LT LHAGGKF+ ++Y++SGGLHG
Sbjct: 62  IIHGDNSISVSDNGRGIPIGIKFDDKHEPKRSAAEIVLTVLHAGGKFNQNSYKVSGGLHG 121

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKF------------SRGIPLSPLEKKEKVRNKRG 204
           VG+S VN LS+ L +T  R    F  +F              G+ +SP+ +  +    RG
Sbjct: 122 VGVSCVNGLSEWLKLTTYRDGKKFGLEFVRGAVKDRHVEVQNGVDVSPVRELGESNK-RG 180

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F  D +IFG    F    L K  +  ++L+  VK      +         + E F 
Sbjct: 181 TEVHFLADKEIFGLV-EFHYEILAKRLRELSFLNNGVKIELIDQR-------TGKSENFA 232

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG++ +++   ++++++  + F    EK      TV+ A+ W +     +  + N I 
Sbjct: 233 YSGGVRGFVEYMNKSKTVLHPKCFEATGEKDNI---TVDVAMQWNDSYSEVVQCFTNNIP 289

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +GLR+A+TR I KY E  +   K  +    DD+      +LSV + +P+F+ 
Sbjct: 290 QRDGGTHMTGLRMAMTRVINKYIEDNELAKKAKVDTTGDDMREGLTCVLSVKVPDPKFSS 349

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK KLVS + Q  V   +      +L++NP++A  +   +IE +  R   RK RE+ R+
Sbjct: 350 QTKDKLVSSEVQPAVNEVVTQKLTDFLLENPVDAKIICGKIIEAARARDAARKARELTRR 409

Query: 442 TA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
              +  + LPGKLADC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV 
Sbjct: 410 KGVLDGIGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVE 469

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFF 559
            A  EK+ ++Q+I  L+  LG     +    + LRY ++IIMTDADVDGAHI +LLLTFF
Sbjct: 470 RARFEKLISSQEIATLITVLGTGIGKEEYNADKLRYHRIIIMTDADVDGAHIRTLLLTFF 529

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           Y++M +L+E+ H+++  PPL++I QG    Y  DE   +  +
Sbjct: 530 YRQMPELVERGHVYIAQPPLYKIKQGRDERYLKDEHELKTYM 571



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ +E   +  K  + I R+KGLGEM   QL ET MD   R LL+V I   +       
Sbjct: 724 FKQAIEWLLEEAKKGVSIQRYKGLGEMNPEQLWETTMDVKNRILLKVRIEDAVG----AD 779

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           +    LMG   + R  FI++ A  + ++ 
Sbjct: 780 EIFTTLMGDVVEPRRAFIEKNALGVKNLD 808


>gi|86150547|ref|ZP_01068771.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|86152360|ref|ZP_01070570.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 260.94]
 gi|121612557|ref|YP_999722.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167004699|ref|ZP_02270457.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni 81-176]
 gi|315123619|ref|YP_004065623.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85838999|gb|EAQ56264.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|85840657|gb|EAQ57909.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 260.94]
 gi|87249029|gb|EAQ71991.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 81-176]
 gi|315017341|gb|ADT65434.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 769

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 248/660 (37%), Positives = 362/660 (54%), Gaps = 50/660 (7%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY AS+I++L+GLE VR RPGMYIG T+   LHH+  EV+DN++DE +AG+ + I+V +
Sbjct: 3   ENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVDNSIDEAMAGHCDTIDVEI 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV+ HP   N  TL ++LT LHAGGKFD  TY++SGGLHGVG+SV
Sbjct: 63  TTEGSCIVSDNGRGIPVDMHP-TENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS +L  TV R   I+ Q+FS G  +S      K +   GT I F PD +IF     
Sbjct: 122 VNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSKK-TGTTIEFWPDDQIFEVT-E 179

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L K  +  AYL+ ++   +  ++       + + E F+F GG+  ++    +  +
Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNR-------VGKHESFHFEGGISQFVIDLNKKEA 232

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340
           L  +  F+   E        VE A+ + +   E   S+ N I T +GGTHE+G R+ LTR
Sbjct: 233 LTKAIFFSVDEED-----VNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTR 287

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  Y E      ++   I  +D+    + ++SV + EP+F GQTK KL S   +  V  
Sbjct: 288 VISNYIEANASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVSK 347

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
           A  +    Y  +NPIEA  ++   +  +  R   +K RE   +K ++    LPGKLADC 
Sbjct: 348 ASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQ 407

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +E+++VEGDSAGGSAKQ R RS QA+LPLRGKILNV  A  +KI  ++QI +++
Sbjct: 408 SKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMI 467

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A GC     +    LRY K+IIMTDADVDG+HI +LLLTFF++ M +L+   H++L  P
Sbjct: 468 TAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQP 527

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET------ 631
           PL+   +  K +Y  DE+   + L E    G        ++G+G M    LK+       
Sbjct: 528 PLYLYKKAKKQIYLKDEKALSEYLIETGIEGLN------YEGIG-MND--LKDYLKIVAA 578

Query: 632 ----AMDANKR----TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
                 D  KR    +++R  I        + ++  + +         +F++ +   I +
Sbjct: 579 YRAILKDLEKRFNVISVIRYMIENSNLVKGNNEELFSVI--------KQFLETQGHNILN 630



 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%)

Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
           ++   ++LE+ + + K    I R+KGLGEM   QL ET MD + R LL++ I       +
Sbjct: 681 DKDILEVLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIED----AQ 736

Query: 654 DTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              D+ N  MG + + R  +IQ  A  +  + 
Sbjct: 737 SANDTFNLFMGDEVEPRRDYIQAHAKDVKHLD 768


>gi|170782024|ref|YP_001710356.1| DNA topoisomerase IV subunit B [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156592|emb|CAQ01743.1| putative DNA gyrase subunit B [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 692

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 230/697 (32%), Positives = 335/697 (48%), Gaps = 63/697 (9%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A+ +Y A  + +LEGLE VR RPGMYIG TD + L H   E+IDN++DE + G+ +LI+V
Sbjct: 2   AASDYSARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALGGHGDLIDV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L  +G + V D  RG+PV+  PK    S +E++ T LHAGGKF + +Y  SGGLHGVG 
Sbjct: 62  RLHPDGSVEVRDTARGVPVDIEPK-TGLSGVEVVFTKLHAGGKFGSGSYASSGGLHGVGA 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN------------------ 201
           SVVNALS+ L V V R    ++  F RG P    ++ E   +                  
Sbjct: 121 SVVNALSERLDVEVDRGGKTYAMSFRRGEPGIFEDQGEASPDAPFRPFTSGSELRVVGKV 180

Query: 202 ---KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
                GTRI +  D +IF   A F    LL   +  A+L   +       +        P
Sbjct: 181 RKGVTGTRIRYWADRQIFTRGASFLTEELLGRARQTAFLVPGLSIDIKDLR-----GEQP 235

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTV 302
            +E F F GG+  ++     +  L  +    G                    + T    V
Sbjct: 236 VRESFRFDGGIAEFVDHLAVDAPLTDTWRLEGSGTFTETVPVLTDGGAMVPTELTRECAV 295

Query: 303 EWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI---SII 358
           + A+ W         S+ N I T +GGTH++G    L + ++   E    K  +    + 
Sbjct: 296 DIALRWGTGYDTRFKSFVNIIATPKGGTHQAGFEAGLLKFVRAQVEANARKLKVGTDKLE 355

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL----VQNPIE 414
            DD++     +L+V   EP+F GQTK  L +   +  V   ++            ++  +
Sbjct: 356 KDDVLAGLTAVLTVRFPEPQFEGQTKEVLGTPAVRAIVSQVVQKAMADRFASPRREDKAQ 415

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
              LLE V+   + R+  R  +E   RK A+    LP KL DC  N    +ELFIVEGDS
Sbjct: 416 TAVLLEKVVGEMKSRISARTHKETQRRKNALESSSLPAKLVDCRSNDVANSELFIVEGDS 475

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           A G+AK AR+   QA+LP+RGKILNV  A    + +N +   ++Q LG  +   +     
Sbjct: 476 ALGTAKLARDSEYQALLPIRGKILNVQKASLPDMLSNTECASIIQVLGAGSGRTFDLSAA 535

Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI------TQGTK 587
           RY K+IIM+DADVDGAHI +LLLT F++ M  +I++  +F   PPL R+      ++   
Sbjct: 536 RYGKIIIMSDADVDGAHIRTLLLTLFFRYMRPMIDEGRVFAAVPPLHRVVVMNPGSKPND 595

Query: 588 SVYAHDEEHKQKILEEFKKHGKGKIE-ISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646
            +Y + E     +L + K+ GK   + I R+KGLGEM A QL  T MD       R    
Sbjct: 596 VIYTYSERELAAVLAQAKRQGKRYQDPIQRYKGLGEMGADQLATTTMD----RRNRTLRR 651

Query: 647 KDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
             ++  +        LMG     R +FI + A  + D
Sbjct: 652 VRVDDAEAATRMFELLMGNDVAPRKEFIIDGAGSVRD 688


>gi|6580765|gb|AAF18271.1| DNA gyrase subunit B [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 822

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 223/576 (38%), Positives = 340/576 (59%), Gaps = 20/576 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
            A     D+YDA SI++L GL+ VR RPGMYIG TD+   LHH+  EV DNA+DE +AGY
Sbjct: 1   MATSKQHDDYDAGSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEALAGY 60

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST----YE 149
            +L+++++  +G ++V DNGRGIP   HP+    S  E+I+T LHAGGKFDN+     Y+
Sbjct: 61  CDLVKIAIYDDGSVSVEDNGRGIPTGIHPE-EGVSAAEVIMTQLHAGGKFDNNANSNAYK 119

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALSD L +TV R       +F  G+ + PL+      +KRGTR+ F
Sbjct: 120 VSGGLHGVGVSVVNALSDYLELTVWRDGQEHRMRFEHGVAVEPLQVVG-ASDKRGTRVRF 178

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F     F+  +L    +  A+L+  V+   +  +   EK         ++ GG+
Sbjct: 179 HPSAETFK-ITEFNFEKLEHRYRELAFLNSGVRLQLTDKRTDPEKTVE-----LFYEGGI 232

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPEITSYCNTILTDEGG 328
             +++     ++ +  E      ++        +EW  ++     ++  + N I   +GG
Sbjct: 233 AAFVKWLDRAKTALIPEPVAIHGDRDDVMIDVALEWNDSY---YEQVLCFTNNIPQRDGG 289

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +  R ALTR +  YA+ +    K  + +  DD+      I+SV + +P+F+ QTK K
Sbjct: 290 THLAAFRAALTRTLNNYADKSGLLKKEKVQLTGDDMREGLTAIISVKLPDPKFSSQTKDK 349

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IR 445
           LVS + ++ +E+ + D    +L +NP  A  +++ +I+ +  R   ++ RE+ R+   + 
Sbjct: 350 LVSSEVRQPLESLMADKMAEWLEENPAHAKVIIQKIIDAAAAREAAKRARELTRRKGVMD 409

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC +     +E+FIVEGDSAGGSAKQ RNR NQA+LPL+GKILN   +  +
Sbjct: 410 IASLPGKLADCQERDPTKSEIFIVEGDSAGGSAKQGRNRHNQAILPLKGKILNTERSRLD 469

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           ++ +++++  L+QALG   R ++    LRY K++IMTDADVDGAHI +LLLTFFY+ M +
Sbjct: 470 RMLSSKEVGTLIQALGTGIRDEFNIAKLRYHKIVIMTDADVDGAHIRTLLLTFFYRHMPE 529

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +IE  HL++  PPLF++ +    VY  DE      L
Sbjct: 530 IIENGHLYIAQPPLFKVAKNRSEVYLKDEAALDNYL 565



 Score = 95.3 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           ++ E     G   + ISR+KGLGEM   QL ET +D   R++L+VE+ +           
Sbjct: 729 QLFEAILAVGSKGLSISRYKGLGEMNPEQLWETTLDPANRSMLKVEVEQ----ADVADGI 784

Query: 659 INKLMGTKADE 669
            ++LMG   + 
Sbjct: 785 FSRLMGDVVEP 795


>gi|325068640|ref|ZP_08127313.1| DNA topoisomerase IV subunit B [Actinomyces oris K20]
          Length = 750

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 232/745 (31%), Positives = 346/745 (46%), Gaps = 97/745 (13%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
           P+  N+++  +Y A  + +LEGLE VR RPGMYIG TD++ L H   E++DNA+DE + G
Sbjct: 2   PSSENKTSRGDYSARHLSVLEGLEAVRKRPGMYIGSTDQRGLMHCVWEIVDNAVDEALEG 61

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           + + I V++  +G + V DNGRG+PV+  P     + +E++ T LHAGGKF   +Y  +G
Sbjct: 62  HGDDISVTVHDDGSIEVRDNGRGVPVDIEP-SSGLTGVELVYTKLHAGGKFGGGSYGAAG 120

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL------------------- 193
           GLHGVG SVVNAL++ + V V R    ++  F RG P                       
Sbjct: 121 GLHGVGASVVNALAERMDVEVDRGGKTYAMSFHRGEPGIFDDSAGRGPSSPFTGFTKSSE 180

Query: 194 -EKKEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-- 249
                KVR    GTR+ +  DP+IF     +DAA L    +  ++L   +       +  
Sbjct: 181 LRVIGKVRRGVTGTRVRYWADPQIFPKPTEYDAAALRARLRQTSFLVPGLTLRLEDKRPE 240

Query: 250 --------------------------------------EIAEKYGIPEKEEFYFPGGLKT 271
                                                 ++ +       E F   GG   
Sbjct: 241 AEAIAASTTPAADAGETDDAVHEVTLRAAAKNATENRGDLFDTGDDDGVEVFQALGGTAD 300

Query: 272 YLQTKLENRSLISSEIFTGKTE-----------------KKGTHRGTVEWAIAWCEENPE 314
           ++     + S+  +   TG+                    +      V+ A+ W      
Sbjct: 301 FVDFLASDGSVTDTFRLTGEGTYTETVQQLDRASGHLRPVEVERTCMVDVALRWGIGYDT 360

Query: 315 IT-SYCNTILTDEGGTHESGLRVALTRGIKKYAEL-----TQNKRAISIISDDLMISAVG 368
              S+ N I T  GGTH +G   ALT+ ++K  E          +   +  DD+M     
Sbjct: 361 TERSFVNIIATPMGGTHLTGFEQALTKVLRKRIEADSRALKLTAKDGRVEKDDIMAGLTA 420

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD----HYLVQNPIEATKLLEWVIE 424
           +++V + EP+F GQTK  L +   ++ V   +                 +A  L E ++ 
Sbjct: 421 VITVRVPEPQFEGQTKEVLGTGPVRQIVSKVVERELTALLTSSKRDLKTQARALEEKIVG 480

Query: 425 RSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483
               R+  R  +E   RKTA+    LP KLADC  +    +ELFIVEGDSA G+AK AR+
Sbjct: 481 EMRARVSARLHKEITRRKTALETSSLPAKLADCRSDDVAASELFIVEGDSALGTAKNARD 540

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTD 543
              QA+LP+RGKILNV  A    +  N +   ++Q +G  +   +  E  RY KVI+MTD
Sbjct: 541 SEFQALLPIRGKILNVQKASQADMLRNVECSAIIQVVGAGSGRTFDLEAARYGKVILMTD 600

Query: 544 ADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI------TQGTKSVYAHDEEHK 597
           ADVDGAHI +LLLT F++ M  +IE   +F   PPL RI       +  + +Y + +E  
Sbjct: 601 ADVDGAHIRTLLLTLFFRYMRPMIEAGRVFAAVPPLHRIEVSGSGRRKKEIIYTYSDEEL 660

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
              L   ++ G+   E  R+KGLGEM A QL ET M+   RTL R+ +  +   + + + 
Sbjct: 661 VTTLRRLERAGRSFKEPQRYKGLGEMDAHQLAETTMEPQHRTLRRITLGDEAQIM-EAES 719

Query: 658 SINKLMGTKADERFKFIQERASFID 682
               LMG+  + R  FI E A  +D
Sbjct: 720 VFELLMGSSVEPRRDFIVEGARDVD 744


>gi|294010033|ref|YP_003543493.1| DNA gyrase subunit B [Sphingobium japonicum UT26S]
 gi|292673363|dbj|BAI94881.1| DNA gyrase subunit B [Sphingobium japonicum UT26S]
          Length = 835

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 221/587 (37%), Positives = 342/587 (58%), Gaps = 26/587 (4%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVI 90
           S    N   S+ Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV DNA+DE +
Sbjct: 2   SEESQNNPNSNAYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEAL 61

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF----DNS 146
           AG+ + I ++L+ +G ++V DNGRGIP + H K    S  E+I+T LHAGGKF    D++
Sbjct: 62  AGHCDRILITLNPDGSVSVEDNGRGIPTDIH-KEEGVSAAEVIMTQLHAGGKFENTSDDN 120

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGT 205
            Y++SGGLHGVG+SVVNALS+ L + + R       +F+ G  ++PL+        K+GT
Sbjct: 121 AYKVSGGLHGVGVSVVNALSEYLDLNIWRDGKEHYMRFAYGDAVAPLKVIGDAPEGKKGT 180

Query: 206 RITFRPDPK-------IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
           ++TF P  +        F +   FD  +L    +  A+L+  V+   +  +   +K    
Sbjct: 181 KVTFLPSTEKVPGDGGTFKNHTEFDFEKLEHRYRELAFLNSGVRLFLADARHEEKKEIE- 239

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT-HRGTVEWAIAWCEENPEITS 317
                ++ GG+  +++    N+  +  +       +        +EW  ++      +  
Sbjct: 240 ----LFYEGGIAAFVKWLDRNKQPLMPDPIAISGSRDDVTIDVALEWNDSY---YENVLC 292

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +  R ALTR +  YA+ +    K  +S+  +D+      I+SV + 
Sbjct: 293 FTNNIPQRDGGTHLAAFRAALTRTLNNYADKSGLLKKEKVSLTGEDMREGLTAIVSVKLP 352

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           +P+F+ QTK KLVS + ++ +E+ + D    +L +NP     +++ VI+ +  R   +K 
Sbjct: 353 DPKFSSQTKDKLVSSEVRQPLESLMADKMAEWLEENPQHGRMIVQKVIDAAAAREAAKKA 412

Query: 436 REVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE+ R+   +    LPGKLADC +     +ELF+VEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 413 RELTRRKGVMDIASLPGKLADCQERDPAKSELFLVEGDSAGGSAKQGRNRHNQAILPLKG 472

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           KILNV  A  +++ +++++  L+QA+G   R  +  E LRY K++IMTDADVDGAHI +L
Sbjct: 473 KILNVERARFDRMLSSKEVGTLIQAMGTGIRDDFNLEKLRYHKIVIMTDADVDGAHIRTL 532

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           LLTFFY++M  +IE  HL++  PPL++ T+G   VY  +E   +  L
Sbjct: 533 LLTFFYRQMPQIIEAGHLYIAQPPLYKATRGRSEVYLKNEAALENYL 579



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           ++LE     G+  + I R+KGLGEM A QL ET +D + R++LRVE+ +         + 
Sbjct: 752 ELLEAILTAGRKGLAIQRYKGLGEMNAEQLWETTLDPDNRSMLRVEVEQ----ADVADEI 807

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             +LMG   + R +FIQ+ A  + ++ 
Sbjct: 808 FTRLMGDVVEPRREFIQDNALNVANLD 834


>gi|207727476|ref|YP_002255870.1| dna gyrase (subunit b) protein [Ralstonia solanacearum MolK2]
 gi|300702377|ref|YP_003743977.1| DNA gyrase subunit B [Ralstonia solanacearum CFBP2957]
 gi|206590713|emb|CAQ56325.1| dna gyrase (subunit b) protein [Ralstonia solanacearum MolK2]
 gi|299070038|emb|CBJ41323.1| DNA gyrase, subunit B (type II topoisomerase) [Ralstonia
           solanacearum CFBP2957]
          Length = 842

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 227/594 (38%), Positives = 343/594 (57%), Gaps = 36/594 (6%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIA 91
              +  + S +Y A+SI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +A
Sbjct: 6   KPQSTPAESSSYGAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALA 65

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTY 148
           G+   I V++  +  ++V+DNGRGIP          P +S  EI++T LHAGGKFD ++Y
Sbjct: 66  GHCTEIHVTIHTDNSISVIDNGRGIPTGIKFDDKHEPKRSAAEIVMTELHAGGKFDQNSY 125

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP---------------- 192
           ++SGGLHGVG+S VN LS  L +TV R   +    F+RGIP +                 
Sbjct: 126 KVSGGLHGVGVSCVNGLSKWLKLTVRRDGKVHHMDFARGIPQNRLLEQAEAPDGKMVEVS 185

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
             +     +KRGT + F  D +IF +   +    L K  +  ++L+  V    +  +   
Sbjct: 186 PLRTSGTTDKRGTEVHFLADEEIFTNV-EYHYEILSKRIRELSFLNNGVHIKLTDQR--- 241

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-E 311
                 ++E+F F GG+K +++   +N++++   +F  + EK G     VE ++ W +  
Sbjct: 242 ----TGKEEDFAFSGGVKGFVEYINKNKTVLHPTVFNAQGEKDGV---GVEVSMQWNDGF 294

Query: 312 NPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369
           N ++  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +
Sbjct: 295 NEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLACV 354

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           LSV + EP+F+ QTK KLVS + +  VE  +      +L++ P +A  +   ++E +  R
Sbjct: 355 LSVKVPEPKFSSQTKDKLVSSEVRLPVEEVVAKALTDFLLETPNDAKIICGKIVEAARAR 414

Query: 430 LRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
              RK RE+ R+   +  + LPGKLADC +     +ELFIVEGDSAGGSAKQ R+R  QA
Sbjct: 415 EAARKAREMTRRKGVLDGMGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQA 474

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVD 547
           +LPL+GKILNV  A  +K+ ++Q+++ L+ A+G          + LRY ++IIMTDADVD
Sbjct: 475 ILPLKGKILNVERARFDKMLSSQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVD 534

Query: 548 GAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           G+HI +LLLTFFY++M ++IE+ H+++  PPL++I  G +  Y  D+      L
Sbjct: 535 GSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYKIKHGKEERYIKDDNEMAAYL 588



 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 9/108 (8%)

Query: 581 RITQG---TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           ++ +G    +   A  +      +       +  I   R+KGLGEM   QL ET MD  +
Sbjct: 740 KVRRGTGDKQREQAVTD--FHAAITWLLAEAERGISRQRYKGLGEMNPGQLWETTMDVTQ 797

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           R LL+V+I   +            LMG   + R  FI+  A    ++ 
Sbjct: 798 RRLLKVQIEDAI----AADQIFTTLMGDDVEPRRNFIETNALVARNID 841


>gi|83749736|ref|ZP_00946713.1| DNA gyrase subunit B [Ralstonia solanacearum UW551]
 gi|207741917|ref|YP_002258309.1| dna gyrase (subunit b) protein [Ralstonia solanacearum IPO1609]
 gi|83723588|gb|EAP70789.1| DNA gyrase subunit B [Ralstonia solanacearum UW551]
 gi|206593303|emb|CAQ60230.1| dna gyrase (subunit b) protein [Ralstonia solanacearum IPO1609]
          Length = 842

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 227/594 (38%), Positives = 343/594 (57%), Gaps = 36/594 (6%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIA 91
              +  + S +Y A+SI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +A
Sbjct: 6   KPQSTPAESSSYGAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALA 65

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTY 148
           G+   I V++  +  ++V+DNGRGIP          P +S  EI++T LHAGGKFD ++Y
Sbjct: 66  GHCTEIHVTIHTDNSISVIDNGRGIPTGIKFDDKHEPKRSAAEIVMTELHAGGKFDQNSY 125

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP---------------- 192
           ++SGGLHGVG+S VN LS  L +TV R   +    F+RGIP +                 
Sbjct: 126 KVSGGLHGVGVSCVNGLSKWLKLTVRRDGKVHHMDFARGIPQNRLLEQAEAPDGKMVEVS 185

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
             +     +KRGT + F  D +IF +   +    L K  +  ++L+  V    +  +   
Sbjct: 186 PLRTSGTTDKRGTEVHFLADEEIFTNV-EYHYEILSKRIRELSFLNNGVHIKLTDQR--- 241

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-E 311
                 ++E+F F GG+K +++   +N++++   +F  + EK G     VE ++ W +  
Sbjct: 242 ----TGKEEDFAFSGGVKGFVEYINKNKTVLHPTVFNAQGEKDGV---GVEVSMQWNDGF 294

Query: 312 NPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369
           N ++  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +
Sbjct: 295 NEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLACV 354

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           LSV + EP+F+ QTK KLVS + +  VE  +      +L++ P +A  +   ++E +  R
Sbjct: 355 LSVKVPEPKFSSQTKDKLVSSEVRLPVEEVVAKALTDFLLETPNDAKIICGKIVEAARAR 414

Query: 430 LRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
              RK RE+ R+   +  + LPGKLADC +     +ELFIVEGDSAGGSAKQ R+R  QA
Sbjct: 415 EAARKAREMTRRKGVLDGMGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQA 474

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVD 547
           +LPL+GKILNV  A  +K+ ++Q+++ L+ A+G          + LRY ++IIMTDADVD
Sbjct: 475 ILPLKGKILNVERARFDKMLSSQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVD 534

Query: 548 GAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           G+HI +LLLTFFY++M ++IE+ H+++  PPL++I  G +  Y  D+      L
Sbjct: 535 GSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYKIKHGKEERYIKDDNEMAAYL 588



 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 9/108 (8%)

Query: 581 RITQG---TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           ++ +G    +   A  +      +       +  I   R+KGLGEM   QL ET MD  +
Sbjct: 740 KVRRGTGDKQREQAVTD--FHAAITWLLAEAERGISRQRYKGLGEMNPGQLWETTMDVTQ 797

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           R LL+V+I   +            LMG   + R  FI+  A    ++ 
Sbjct: 798 RRLLKVQIEDAI----AADQIFTTLMGDDVEPRRNFIETNALVARNID 841


>gi|88597733|ref|ZP_01100966.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218561696|ref|YP_002343475.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|9297098|sp|O87667|GYRB_CAMJE RecName: Full=DNA gyrase subunit B
 gi|88190037|gb|EAQ94013.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359402|emb|CAL34184.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|284925306|gb|ADC27658.1| DNA gyrase B subunit [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315928458|gb|EFV07770.1| DNA gyrase B subunit [Campylobacter jejuni subsp. jejuni DFVF1099]
 gi|315930330|gb|EFV09418.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 305]
          Length = 769

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 250/660 (37%), Positives = 362/660 (54%), Gaps = 50/660 (7%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY AS+I++L+GLE VR RPGMYIG T+   LHH+  EV+DN++DE +AG+ + I+V +
Sbjct: 3   ENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVDNSIDEAMAGHCDTIDVEI 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV+ HP   N  TL ++LT LHAGGKFD  TY++SGGLHGVG+SV
Sbjct: 63  TTEGSCIVSDNGRGIPVDMHP-TENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS +L  TV R   I+ Q+FS G  +S      K +   GT I F PD +IF     
Sbjct: 122 VNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSKK-TGTTIEFWPDDQIFEVT-E 179

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L K  +  AYL+ ++   +  ++       + + E F+F GG+  ++    +  +
Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNR-------VGKHESFHFEGGISQFVTDLNKKEA 232

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340
           L  +  F+   E        VE A+ + +   E   S+ N I T +GGTHE+G R+ LTR
Sbjct: 233 LTKAIFFSVDEED-----VNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTR 287

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  Y E      ++   I  DD+    + I+SV + EP+F GQTK KL S   +  V  
Sbjct: 288 VISNYIEANASAREKDNKITGDDVREGLIAIVSVKVPEPQFEGQTKGKLGSTYVRPIVSK 347

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
           A  +    Y  +NPIEA  ++   +  +  R   +K RE   +K ++    LPGKLADC 
Sbjct: 348 ASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQ 407

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +E+++VEGDSAGGSAKQ R RS QA+LPLRGKILNV  A  +KI  ++QI +++
Sbjct: 408 SKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMI 467

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A GC     +    LRY K+IIMTDADVDG+HI +LLLTFF++ M +L+   H++L  P
Sbjct: 468 TAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQP 527

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET------ 631
           PL+   +  K +Y  DE+   + L E    G        ++G+G M    LK+       
Sbjct: 528 PLYLYKKAKKQIYLKDEKALSEYLIETGIEGLN------YEGIG-MND--LKDYLKIVAA 578

Query: 632 ----AMDANKR----TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
                 D  KR    +++R  I        + ++  + +         +F++ +   I +
Sbjct: 579 YRAILKDLEKRFNVISVIRYMIENSNLVKGNNEELFSVI--------KQFLETQGHNILN 630



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 8/112 (7%)

Query: 578 PLFR----ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           PL+     I    K      ++   ++LE+ + + K    I R+KGLGEM   QL ET M
Sbjct: 661 PLYEEASYIFDKIKDRSLEFDKDILEVLEDVETNAKKGATIQRYKGLGEMNPEQLWETTM 720

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D + R LL++ I       +   D+ N  MG + + R  +IQ  A  +  + 
Sbjct: 721 DPSVRRLLKITIED----AQSANDTFNLFMGDEVEPRRDYIQAHAKDVKHLD 768


>gi|187927115|ref|YP_001897602.1| DNA gyrase subunit B [Ralstonia pickettii 12J]
 gi|241661628|ref|YP_002979988.1| DNA gyrase subunit B [Ralstonia pickettii 12D]
 gi|309780180|ref|ZP_07674931.1| DNA gyrase, B subunit [Ralstonia sp. 5_7_47FAA]
 gi|187724005|gb|ACD25170.1| DNA gyrase, B subunit [Ralstonia pickettii 12J]
 gi|240863655|gb|ACS61316.1| DNA gyrase, B subunit [Ralstonia pickettii 12D]
 gi|308920883|gb|EFP66529.1| DNA gyrase, B subunit [Ralstonia sp. 5_7_47FAA]
          Length = 842

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 224/598 (37%), Positives = 347/598 (58%), Gaps = 36/598 (6%)

Query: 29  IPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMD 87
             +    +  + +++YDA+SI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++D
Sbjct: 2   TEEQKPQSTPAEANSYDAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSID 61

Query: 88  EVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFD 144
           E +AG+   I+V++  +  ++V+DNGRGIP          P +S  EI +T LHAGGKF+
Sbjct: 62  EALAGHCTEIQVTIHTDNSISVIDNGRGIPTGIKFDDKHEPKRSATEIAMTELHAGGKFN 121

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE------- 197
            ++Y++SGGLHGVG+S VN LS  + VTV +   +   +F++G+P + L +         
Sbjct: 122 QNSYKVSGGLHGVGVSCVNGLSKWMKVTVRQGGKVHYIEFAQGVPQNRLIETVQGPDGQM 181

Query: 198 ---------KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
                       +KRGT + F  D +IF +   +    L K  +  ++L+  V    +  
Sbjct: 182 VEVSPLRVLGTTDKRGTEVHFLADEEIFTNV-EYHYEILSKRIRELSFLNNGVHIRLTDQ 240

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +         ++E+F F GG+K +++   +N++++   IF    EK G     VE ++ W
Sbjct: 241 R-------TGKEEDFAFSGGVKGFVEYINKNKTVLHPTIFFAAGEKDGV---AVEVSMQW 290

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
            +    ++  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+   
Sbjct: 291 NDAYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVDTSGDDMREG 350

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              +LSV + EP+F+ QTK KLVS + +  VE  +      +L++ P++A  +   ++E 
Sbjct: 351 LTCVLSVKVPEPKFSSQTKDKLVSSEVRLPVEEVVAKALSDFLLETPVDAKIICGKIVEA 410

Query: 426 SEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           +  R   RK RE+ R+   +  + LPGKLADC +     +ELFIVEGDSAGGSAKQ R+R
Sbjct: 411 ARAREAARKAREMTRRKGVLDGMGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDR 470

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTD 543
             QA+LPL+GKILNV  A  +K+ ++Q+++ L+ A+G          + LRY ++IIMTD
Sbjct: 471 KFQAILPLKGKILNVERARFDKMLSSQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTD 530

Query: 544 ADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ADVDG+HI +LLLTFFY++M ++IE+ H+++  PPL++I  G +  Y  D+      L
Sbjct: 531 ADVDGSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYKIKHGKEERYIKDDVEMAAYL 588



 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 7/107 (6%)

Query: 581 RITQGT--KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           ++ +GT  K     +       +       +  +   R+KGLGEM   QL ET MD  +R
Sbjct: 740 KVRRGTGDKVRE-QNVADFHAAMTWLLSEAERGVSRQRYKGLGEMNPEQLWETTMDVTQR 798

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            LLRV+I   +            LMG   + R  FI+  A    ++ 
Sbjct: 799 RLLRVQIEDAI----AADQIFTTLMGDDVEPRRNFIESNALVARNID 841


>gi|325528071|gb|EGD05283.1| DNA gyrase subunit B [Burkholderia sp. TJI49]
          Length = 824

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 235/594 (39%), Positives = 341/594 (57%), Gaps = 33/594 (5%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94
            +Q  + +Y ASSI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +AGY 
Sbjct: 6   NSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYC 65

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVE--NHPKFP-NKSTLEIILTTLHAGGKFDNSTYEIS 151
           N I V++  +  ++V DNGRGIP +   + K    +S  EI++T LHAGGKFD ++Y++S
Sbjct: 66  NDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQNSYKVS 125

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKV 199
           GGLHGVG+S VNALS  L +TV R       +F RG+             +SP++     
Sbjct: 126 GGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQDRVLEKIDGEEVSPMQIIGDT 185

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            N RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E      
Sbjct: 186 EN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD---- 239

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              F F GG+K +++   + +S +   IF    EK G     VE A+ W +     +  +
Sbjct: 240 ---FAFAGGVKGFVEYINKTKSNLHPTIFHVNGEKDGV---GVEVAMQWNDSYNENVLCF 293

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + E
Sbjct: 294 TNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETTGDDMREGLSCVLSVKVPE 353

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F+ QTK KLVS + +  VE  +    + +L++ P +A  +   ++E +  R   RK R
Sbjct: 354 PKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKAR 413

Query: 437 EVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E+ R+   +  + LPGKLADC +     +E++IVEGDSAGGSAKQ R+R  QA+LPLRGK
Sbjct: 414 EMTRRKGVLDGVGLPGKLADCQEKDPSKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGK 473

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASL 554
           +LNV  A  +K+ +++QI+ LV ALGC         + LRY ++IIMTDADVDGAHI +L
Sbjct: 474 VLNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTL 533

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           LLTFFY++M +++E+ ++++  PPL++I  G    Y  D+      +      G
Sbjct: 534 LLTFFYRQMPEMVERGYVYIAQPPLYKIKAGKDERYLKDDAELNAHMLRLALQG 587



 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 16/120 (13%)

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           LI+   +         I +G +S         +  ++      +  +   R+KGLGEM  
Sbjct: 720 LIQAGAV---------IKRGERS---MAVSDFKSAMKWLLADAERNVSKQRYKGLGEMNP 767

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL ET MD   R LLRV+I   +            LMG + + R  FI+  A    ++ 
Sbjct: 768 EQLWETTMDPTVRRLLRVQIEDAI----AADGIFTTLMGDEVEPRRAFIESNALRAGNID 823


>gi|149926944|ref|ZP_01915203.1| DNA topoisomerase IV subunit B [Limnobacter sp. MED105]
 gi|149824496|gb|EDM83714.1| DNA topoisomerase IV subunit B [Limnobacter sp. MED105]
          Length = 653

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 241/665 (36%), Positives = 360/665 (54%), Gaps = 40/665 (6%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y  SSIR+L+GLEPV+ RPGMY   T      H+  EVIDNA DE + G+ + I V++
Sbjct: 2   SQYQESSIRVLKGLEPVKQRPGMY---TRTDCPLHIIQEVIDNAADEALGGFGSRITVTI 58

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLHGVG 158
             +G ++V D GRGIP+  HP+      +E++ T LHAGGKF+      Y  SGGLHGVG
Sbjct: 59  HTDGSVSVQDEGRGIPIGLHPE-EKVPVIELVFTRLHAGGKFNKADGGAYRFSGGLHGVG 117

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK--KEKVRNKRGTRITFRPDPKIF 216
           +SV NALS  L V+  R   + +  FS G  + PL+   +     K+GT +   PDP+ F
Sbjct: 118 VSVTNALSTRLEVSAVRDKQVGTLVFSGGDVIEPLKVRPQTGSDPKKGTTVRVWPDPQYF 177

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                     + ++ +SKA L   V+     +K         E + + F  GL+ +L+ +
Sbjct: 178 DSAV-LPLNEMDRLLRSKAVLLKGVEVVLVTEK-------TGEAKRWKFDDGLRGFLKEE 229

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC------EENPEITSYCNTILTDEGGTH 330
           L +R L++       +       G  E   A        E  P   SY N I T  GGTH
Sbjct: 230 LLDRELVAPMFSGDLSVDVLRDEGFAEGEGAAWALAFVAEGTPVRESYVNLIPTSAGGTH 289

Query: 331 ESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           ESGLR A+ + IK + E+     + I ++ DD+   A  +LS  + +P+F GQ K +L S
Sbjct: 290 ESGLREAVFQAIKAFCEMHSLMPKGIKLMPDDIFSKANFVLSAKVLDPQFQGQIKERLNS 349

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
            DA R V + ++  F+ +L Q+  +  K+ E  I++++ R R    ++V ++ +     L
Sbjct: 350 RDAVRLVSSLVKPAFELWLNQHVEDGKKIAELAIKQAQARSR--AAQKVEKRKSSSVAIL 407

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKL DC        E+F+VEGDSAGGSAK  R++  QAVLPLRGK+LN      +++  
Sbjct: 408 PGKLTDCESTDITLNEVFLVEGDSAGGSAKMGRDKEFQAVLPLRGKVLNAWETDKDRLFA 467

Query: 510 NQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           NQ+I D+  A+G          D   LRY K+ I++DADVDG+HI  LLLT FY+    L
Sbjct: 468 NQEIHDIAVAIGVDPHGVNDNPDLSGLRYGKICILSDADVDGSHIQVLLLTLFYKHFPAL 527

Query: 567 IEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKIEISRFK 618
           I  ++L++  PPLFR+    QG K    +Y  DE     + ++  K G  +  I+ISRFK
Sbjct: 528 IRSQNLYVARPPLFRVDVPAQGKKPARKLYCLDEAELYAVQDKLGKEGVKEANIKISRFK 587

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMG-TKADERFKFIQER 677
           GLGEM A QL ET ++ + R LL V +      + +T   ++ LMG T++  R  +++++
Sbjct: 588 GLGEMNAEQLWETTLNPDTRRLLPVTL--GSMDVNETNAMMHMLMGRTESGARRTWLEDK 645

Query: 678 ASFID 682
            + ++
Sbjct: 646 GNLVE 650


>gi|148926822|ref|ZP_01810501.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni CG8486]
 gi|145844547|gb|EDK21654.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 769

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 250/660 (37%), Positives = 362/660 (54%), Gaps = 50/660 (7%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY AS+I++L+GLE VR RPGMYIG T+   LHH+  EV+DN++DE +AG+ + I+V +
Sbjct: 3   ENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVDNSIDEAMAGHCDTIDVEI 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV+ HP   N  TL ++LT LHAGGKFD  TY++SGGLHGVG+SV
Sbjct: 63  TTEGSCIVSDNGRGIPVDMHP-TENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS +L  TV R   I+ Q+FS G  +S      K +   GT I F PD +IF     
Sbjct: 122 VNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSKK-TGTTIEFWPDDQIFEVT-E 179

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L K  +  AYL+ ++   +  ++       + + E F+F GG+  ++    +  +
Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNR-------VGKHESFHFEGGISQFVTDLNKKEA 232

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340
           L  +  F+   E        VE A+ + +   E   S+ N I T +GGTHE+G R+ LTR
Sbjct: 233 LTKAIFFSVDEED-----VNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTR 287

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  Y E      ++   I  DD+    + I+SV + EP+F GQTK KL S   +  V  
Sbjct: 288 VISNYIEANASAREKDNKITGDDVREGLIAIVSVKVPEPQFEGQTKGKLGSTYVRPIVSK 347

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
           A  +    Y  +NPIEA  ++   +  +  R   +K RE   +K ++    LPGKLADC 
Sbjct: 348 ASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQ 407

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +E+++VEGDSAGGSAKQ R RS QA+LPLRGKILNV  A  +KI  ++QI +++
Sbjct: 408 SKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMI 467

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A GC     +    LRY K+IIMTDADVDG+HI +LLLTFF++ M +L+   H++L  P
Sbjct: 468 TAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQP 527

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET------ 631
           PL+   +  K +Y  DE+   + L E    G        ++G+G M    LK+       
Sbjct: 528 PLYLYKKAKKQIYLKDEKALSEYLIETGIEGLN------YEGIG-MND--LKDYLKIVAA 578

Query: 632 ----AMDANKR----TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
                 D  KR    +++R  I        + ++  + +         +F++ +   I +
Sbjct: 579 YRAILKDLEKRFNVISVIRYMIENSNLVKGNNEELFSVI--------KQFLETQGHNILN 630



 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%)

Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
           ++   ++LE+ + + K    I R+KGLGEM   QL ET MD + R LL++ I       +
Sbjct: 681 DKDILEVLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIED----AQ 736

Query: 654 DTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              D+ N  MG + + R  +IQ  A  +  + 
Sbjct: 737 SANDTFNLFMGDEVEPRRDYIQAHAKDVKHLD 768


>gi|171913703|ref|ZP_02929173.1| DNA gyrase subunit B [Verrucomicrobium spinosum DSM 4136]
          Length = 864

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 216/598 (36%), Positives = 326/598 (54%), Gaps = 23/598 (3%)

Query: 27  GEIPDSPAFANQSASDN--YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDN 84
            +  ++P   N   +DN  Y A  I  LEGLE VR RPGMYIG  DE+ LHH   EV+DN
Sbjct: 2   SDDNNTPETFNTGIADNQAYGAEQIDKLEGLEAVRKRPGMYIGDPDERGLHHCVFEVLDN 61

Query: 85  AMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144
           ++DE +AG+   I V++  +G  +V D+GRGIPVE HPKF    T+E++LT LHAGGKF 
Sbjct: 62  SIDEHLAGFCKTITVTIHSDGSCSVEDDGRGIPVEIHPKF-GVPTVELVLTNLHAGGKFG 120

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-- 202
              Y+ SGGLHGVG   VNALS+     V R     +  FSRG    PL     + +   
Sbjct: 121 QGAYKYSGGLHGVGAKCVNALSEWFKAEVYRGGKAHAISFSRGKTTEPLTVVGDLEDPTR 180

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT+ITF PD +IF     F    L+   +  A+L+  V      ++          +E 
Sbjct: 181 TGTKITFFPDAEIFTATTEFRFELLVNRLRELAFLNPGVIIVLKDER-----PEPIREET 235

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEK-----KGTHRGTVEWAIAWCEEN-PEIT 316
           F++  G+  ++    +N+ L+  +    + ++            V+  + + +    ++ 
Sbjct: 236 FFYKFGVVEFVVQLGDNKVLVHDKPVVLRGQRFIEVEDKQDICFVDCVLQYNDSYSEQML 295

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFI 374
            + N+I   +GGTH SG R A+TR I ++A+  +  +        +D     V ILSV +
Sbjct: 296 CFANSIPNPDGGTHLSGFRSAMTRAINQFAKANKMVKESDPPITGEDCREGMVCILSVKL 355

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
             P F  QTK KLV+ + +  V + + +    +L +NP  A ++++ ++  +  R   RK
Sbjct: 356 PNPRFNSQTKGKLVNGEVEGAVSSVVYEGMQQFLDENPGVAKRIIDKILTAARAREAARK 415

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
            RE  RK+ +    LPGKLADC++     +ELFIVEGDSAGGSAK  R+R  QA+LPLRG
Sbjct: 416 ARETVRKSVMTGGGLPGKLADCTERDPAKSELFIVEGDSAGGSAKVGRDRRVQAILPLRG 475

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRS-----QYREEDLRYEKVIIMTDADVDGA 549
           K++NV  A  +K   N++I  ++ A+G           +R E  RY K+IIMTDADVDG+
Sbjct: 476 KLINVEKARLDKALQNREIQAMITAIGTGIGDGADEGSFRLEKARYHKIIIMTDADVDGS 535

Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607
           HI +LLLTFF ++M +L+ + ++++  PPL+ + +  +  Y  D+     IL +    
Sbjct: 536 HIRTLLLTFFCRQMPELVRRGYIYIAQPPLYLVKRRKREEYVQDDGELNHILIDLGAE 593



 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 2/86 (2%)

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
           ILE     G+  +EI RFKGLGEM A +L  T M+   R LLRV +N++     +     
Sbjct: 780 ILEGVMNIGRRGLEIRRFKGLGEMNAKELYTTTMEQKTRKLLRVRLNEENE--IEADRIF 837

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
             LMG   + R  FI+E A  + ++ 
Sbjct: 838 TILMGDIVEPRKIFIEENALNVRNLD 863


>gi|319404951|emb|CBI78553.1| DNA gyrase subunit B [Bartonella sp. AR 15-3]
          Length = 809

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 226/565 (40%), Positives = 335/565 (59%), Gaps = 16/565 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +Y ASSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGYA L+ V+L
Sbjct: 12  DYGASSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYATLVNVTL 71

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G  +V DNGRGIP + HP     S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SV
Sbjct: 72  HADGSCSVHDNGRGIPTDIHP-TEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSV 130

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  L + + R   I    F+ G+  S L+      ++ GT ITF P  + F     
Sbjct: 131 VNALSVWLRLRIKRDGKIHEMSFTHGVADSALKIIGNCDSESGTEITFLPSSETFT-MVE 189

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F+   L +  +  A+L+  +    +  +    +         ++ GGL  +++   +++ 
Sbjct: 190 FNFETLERRLRELAFLNSGIHILLTDQRRADVQSVE-----LHYEGGLIEFVKYIDQSKK 244

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            +         EK G    +V+ A+ W +    ++  + N I   +GGTH +G R ALTR
Sbjct: 245 ALIDNPIYITNEKDG---MSVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRSALTR 301

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  YAE +    K  +S+  DD       ILSV + +P+F+ QTK KLVS + +  VEN
Sbjct: 302 QINGYAESSGIAKKEKVSLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVEN 361

Query: 399 ALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
            + +    +L ++P EA  L+ + V   +     R+ +    RK A+    LPGKLADC 
Sbjct: 362 LVNEGLSAWLEEHPNEAKILISKVVEAAAVREAARKARELTRRKGALDITSLPGKLADCQ 421

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           +     +E+FIVEGDSAGGSAK  R+R NQA+LPLRGKILNV  A  +++ +++ I  L+
Sbjct: 422 ERDPTKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERARFDRMLSSEMIGTLI 481

Query: 518 QALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
            ALG          + +RY K+IIMTDADVDGAHI +LLLTFF+++M +LIE+ +L++  
Sbjct: 482 TALGTSIGKDEFSPDKVRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGYLYIAQ 541

Query: 577 PPLFRITQGTKSVYAHDEEHKQKIL 601
           PPL+++++G  S Y  +E   ++ L
Sbjct: 542 PPLYKVSRGKFSQYIKNEAAFEEFL 566



 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 13/121 (10%)

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
           +LIE   ++   PPL      ++ ++         +LE   K+GK  + + R+KGLGEM 
Sbjct: 701 NLIE---VYSF-PPLLHRKDKSERIFG-----PIGLLESIFKNGKKGLTLQRYKGLGEMN 751

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           A QL ET +D + RTLL+V+IN       D     ++LMG + + R  FIQ+ A  + ++
Sbjct: 752 ADQLWETTLDPDARTLLQVKINDAT----DADSLFSRLMGDEVEPRRSFIQDNALSVANL 807

Query: 685 G 685
            
Sbjct: 808 D 808


>gi|205355744|ref|ZP_03222514.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346521|gb|EDZ33154.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 769

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 250/660 (37%), Positives = 362/660 (54%), Gaps = 50/660 (7%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY AS+I++L+GLE VR RPGMYIG T+   LHH+  EV+DN++DE +AG+ + I+V +
Sbjct: 3   ENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVDNSIDEAMAGHCDTIDVEI 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV+ HP   N  TL ++LT LHAGGKFD  TY++SGGLHGVG+SV
Sbjct: 63  TTEGSCIVSDNGRGIPVDMHP-TENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS +L  TV R   I+ Q+FS G  +S      K +   GT I F PD +IF     
Sbjct: 122 VNALSKKLVATVERNGEIYRQEFSEGKVISEFGVVGKSKK-TGTTIEFWPDDQIFEVT-E 179

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L K  +  AYL+ ++   +  ++       + + E F+F GG+  ++    +  +
Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNR-------VGKHESFHFEGGISQFVTDLNKKEA 232

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340
           L  +  F+   E        VE A+ + +   E   S+ N I T +GGTHE+G R+ LTR
Sbjct: 233 LTKAIFFSVDEED-----VNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTR 287

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  Y E      ++   I  DD+    + I+SV + EP+F GQTK KL S   +  V  
Sbjct: 288 VISNYIEANASAREKDNKITGDDVREGLIAIVSVKVPEPQFEGQTKGKLGSTYVRPIVSK 347

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
           A  +    Y  +NPIEA  ++   +  +  R   +K RE   +K ++    LPGKLADC 
Sbjct: 348 ASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQ 407

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +E+++VEGDSAGGSAKQ R RS QA+LPLRGKILNV  A  +KI  ++QI +++
Sbjct: 408 SKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMI 467

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A GC     +    LRY K+IIMTDADVDG+HI +LLLTFF++ M +L+   H++L  P
Sbjct: 468 TAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQP 527

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET------ 631
           PL+   +  K +Y  DE+   + L E    G        ++G+G M    LK+       
Sbjct: 528 PLYLYKKAKKQIYLKDEKALSEYLIETGIEGLN------YEGIG-MND--LKDYLKIVAA 578

Query: 632 ----AMDANKR----TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
                 D  KR    +++R  I        + ++  + +         +F++ +   I +
Sbjct: 579 YRAILKDLEKRFNVISVIRYMIENSNLVKGNNEELFSVI--------KQFLETQGHNILN 630



 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%)

Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
           ++   ++LE+ + + K    I R+KGLGEM   QL ET MD + R LL++ I       +
Sbjct: 681 DKDILEVLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIED----AQ 736

Query: 654 DTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              D+ N  MG + + R  +IQ  A  +  + 
Sbjct: 737 SANDTFNLFMGDEVEPRRDYIQAHAKDVKHLD 768


>gi|217968468|ref|YP_002353702.1| DNA gyrase subunit B [Thauera sp. MZ1T]
 gi|217505795|gb|ACK52806.1| DNA gyrase, B subunit [Thauera sp. MZ1T]
          Length = 833

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 233/609 (38%), Positives = 346/609 (56%), Gaps = 36/609 (5%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNA 85
              P     A+  A ++YD +SI+ LEGLE VR RPGMYIG T D   LHH+  EV+DN+
Sbjct: 1   MSEPQDQPTASAKAHEDYDETSIQQLEGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNS 60

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGK 142
           +DE +AG+ + I +++  +  ++V DNGRGIPV         P +S  EI++  LHAGGK
Sbjct: 61  IDEALAGHCDDIVITIHADNSISVTDNGRGIPVGVKMDDKHEPKRSAAEIVMCVLHAGGK 120

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------L 190
           F+ ++Y++SGGLHGVG+S VNALS  ++VTVAR       +F RG P            +
Sbjct: 121 FNQNSYKVSGGLHGVGVSCVNALSKWMNVTVARDGKRHLLEFERGKPQNRVIEVVDGVEV 180

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           SP     +    RGT++ +  D +IFG    +    L K  +  ++L+  VK      + 
Sbjct: 181 SPARVIGETTK-RGTKVHYLADEEIFGTI-EYHYDILAKRLRELSFLNNGVKIRLIDQR- 237

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG------THRGTVEW 304
                   ++E+F F GG+K +++     ++++   +F      +            VE 
Sbjct: 238 ------TGKEEDFAFAGGVKGFVEYINRAKTVLHPNVFYATGTTRIPTGHGHDAELAVEV 291

Query: 305 AIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDD 361
           A+ W +    ++  Y N I   +GGTH +GLR A+TR I KY E  +   K  + I  DD
Sbjct: 292 AMQWNDSYQEQVLCYTNNIPQADGGTHLTGLRAAMTRVINKYIEENEIAKKAKVDITGDD 351

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
           +      +LSV + +P+FA QTK KLVS +A+  VE  +      +L++NPI+A  +   
Sbjct: 352 MREGLACVLSVKMPDPKFASQTKMKLVSSEARPAVEEVVASKLGDFLLENPIDAKTICNK 411

Query: 422 VIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
           ++E +  R   RK RE+ R+   +  + LPGKLADC +      EL++VEGDSAGGSAKQ
Sbjct: 412 IVEAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPALCELYLVEGDSAGGSAKQ 471

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            R+R  QA+LPL+GKILNV  A  +K+  +Q+I  L+ ALG    +  Y+ E LRY ++I
Sbjct: 472 GRDRKFQAILPLKGKILNVEKARFDKLLQSQEIATLITALGTSIGKDDYKPEKLRYHRII 531

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599
           +MTDADVDGAHI +LLLTFFY++M +L+E+ H+++  PPL++I  G   +Y  D+     
Sbjct: 532 LMTDADVDGAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKIKHGKSEMYIKDDSELSN 591

Query: 600 ILEEFKKHG 608
            L      G
Sbjct: 592 HLLRLALDG 600



 Score =  133 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G K             ++      +  I   R+KGLGEM   QL ET MD   R LL
Sbjct: 736 IRRGEKRQ---TVSRFADAIKWMLADVERGITKQRYKGLGEMNPEQLWETTMDPAVRRLL 792

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           RV+I+  +       +    LMG   + R  FI+  A +  ++ 
Sbjct: 793 RVQIDDAI----AADEIFTTLMGDNVEPRRAFIEGNALYAQNID 832


>gi|241762428|ref|ZP_04760506.1| DNA gyrase, B subunit [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|260753854|ref|YP_003226747.1| DNA gyrase subunit beta [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|241373022|gb|EER62680.1| DNA gyrase, B subunit [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|258553217|gb|ACV76163.1| DNA gyrase, B subunit [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 812

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 223/576 (38%), Positives = 340/576 (59%), Gaps = 20/576 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
            A     D+YDA SI++L GL+ VR RPGMYIG TD+   LHH+  EV DNA+DE +AGY
Sbjct: 1   MATSKQHDDYDAGSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEALAGY 60

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST----YE 149
            +L+++++  +G ++V DNGRGIP   HP+    S  E+I+T LHAGGKFDN+     Y+
Sbjct: 61  CDLVKIAIYDDGSVSVEDNGRGIPTGIHPE-EGVSAAEVIMTQLHAGGKFDNNANSNAYK 119

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALSD L +TV R       +F  G+ + PL+      +KRGTR+ F
Sbjct: 120 VSGGLHGVGVSVVNALSDYLELTVWRDGQEHRMRFEHGVAVEPLQVVG-ASDKRGTRVRF 178

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F     F+  +L    +  A+L+  V+   +  +   EK         ++ GG+
Sbjct: 179 HPSAETFK-ITEFNFEKLEHRYRELAFLNSGVRLQLTDKRTDPEKTVE-----LFYEGGI 232

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPEITSYCNTILTDEGG 328
             +++     ++ +  E      ++        +EW  ++     ++  + N I   +GG
Sbjct: 233 AAFVKWLDRAKTALIPEPVAIHGDRDDVMIDVALEWNDSY---YEQVLCFTNNIPQRDGG 289

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +  R ALTR +  YA+ +    K  + +  DD+      I+SV + +P+F+ QTK K
Sbjct: 290 THLAAFRAALTRTLNNYADKSGLLKKEKVQLTGDDMREGLTAIISVKLPDPKFSSQTKDK 349

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IR 445
           LVS + ++ +E+ + D    +L +NP  A  +++ +I+ +  R   ++ RE+ R+   + 
Sbjct: 350 LVSSEVRQPLESLMADKMAEWLEENPAHAKVIIQKIIDAAAAREAAKRARELTRRKGVMD 409

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC +     +E+FIVEGDSAGGSAKQ RNR NQA+LPL+GKILN   +  +
Sbjct: 410 IASLPGKLADCQERDPTKSEIFIVEGDSAGGSAKQGRNRHNQAILPLKGKILNTERSRLD 469

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           ++ +++++  L+QALG   R ++    LRY K++IMTDADVDGAHI +LLLTFFY+ M +
Sbjct: 470 RMLSSKEVGTLIQALGTGIRDEFNIAKLRYHKIVIMTDADVDGAHIRTLLLTFFYRHMPE 529

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +IE  HL++  PPLF++ +    VY  DE      L
Sbjct: 530 IIENGHLYIAQPPLFKVAKNRSEVYLKDEAALDNYL 565



 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           ++ E     G   + ISR+KGLGEM   QL ET +D   R++L+VE+ +         + 
Sbjct: 729 QLFEAILAVGSKGLSISRYKGLGEMNPEQLWETTLDPANRSMLKVEVEQ----ADVADEI 784

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            ++LMG   + R  FIQ+ A  + ++ 
Sbjct: 785 FSRLMGDVVEPRRDFIQQNALSVANLD 811


>gi|121608631|ref|YP_996438.1| DNA topoisomerase IV subunit B [Verminephrobacter eiseniae EF01-2]
 gi|121553271|gb|ABM57420.1| DNA topoisomerase IV subunit B [Verminephrobacter eiseniae EF01-2]
          Length = 661

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 246/675 (36%), Positives = 352/675 (52%), Gaps = 42/675 (6%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           S   +    S  Y   SIR+L+GLEPVR RPGMY   T      H+  EV+DNA DE +A
Sbjct: 2   SAKPSRLPTSGVYSEGSIRVLKGLEPVRQRPGMY---TRTDNPLHITQEVLDNAADEALA 58

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STY 148
           GY   I+V+L  +G ++V D+GRGIP   HP+      +E++ T LHAGGKFD      Y
Sbjct: 59  GYGKKIKVTLHIDGSVSVEDDGRGIPFGMHPE-EKAPVIELVFTRLHAGGKFDKGQGGAY 117

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR--GTR 206
             SGGLHGVG+SV NAL+  L  T  R+  +    FS G  + PL  +     +R  GT 
Sbjct: 118 SFSGGLHGVGVSVTNALTTRLEATSHREGQLARLVFSGGAVIEPLRTRPLASGERRQGTT 177

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           +   PD + F          L ++ +SKA L   +      +K           + + + 
Sbjct: 178 VRLWPDAQYFES-CALPMGPLCQLLRSKAVLMPGLCVSLLNEKTRD-------TQTWQYQ 229

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE-----WAIAWCEENPE-ITSYCN 320
           GGL+ YL   L    +I   +F G     G+H    E     W +A+ E+ P    SY N
Sbjct: 230 GGLRDYLAQNLSADPVI--PLFEGAAFADGSHESFAEGEGAAWCLAFTEDGPPIRESYVN 287

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEF 379
            I T  GGTHESGLR  L   +K + E  +   + + ++ +D+   A  +LS  + +P+F
Sbjct: 288 LIPTSAGGTHESGLRDGLFNAVKSFIELHSLLPKGVKLLPEDMFARASYVLSAKVLDPQF 347

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN 439
            GQ K +L S DA R V   +R   + +L Q+     KL E  I+ ++ R +  ++ E  
Sbjct: 348 QGQIKERLNSRDAVRLVSGFVRPALELWLNQHVEYGKKLAELAIKAAQTRQKAGQKVEKR 407

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           + + +  L  PGKL DC        E+F+VEGDSAGGSAK  R++ +QA+LPLRGK+LN 
Sbjct: 408 KGSGVAVL--PGKLTDCESRDTAHNEVFLVEGDSAGGSAKMGRDKESQAILPLRGKVLNT 465

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLL 556
                +++  N +I D+  A+G          D   LRY KV I++DADVDGAHI  LLL
Sbjct: 466 WEVERDRLFANNEIHDISVAIGVDPHGPDDRPDLTGLRYGKVCILSDADVDGAHIQVLLL 525

Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG-- 608
           T F++    LI   H+++  PPLFR+    +G K    +YA D      IL++  K G  
Sbjct: 526 TLFFRHFPQLIATGHIYVARPPLFRVDVPARGKKPAAKMYALDAGELAAILDKCAKEGLA 585

Query: 609 KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KA 667
           + K +ISRFKGLGEM A QL ET ++ + R LL V++         T+  I KLMG  +A
Sbjct: 586 REKCQISRFKGLGEMNAEQLWETTLNPDTRRLLPVQL--GALDFSATEGLITKLMGKGEA 643

Query: 668 DERFKFIQERASFID 682
             R + ++     ++
Sbjct: 644 AARRELMELHGDAVE 658


>gi|150398412|ref|YP_001328879.1| DNA gyrase subunit B [Sinorhizobium medicae WSM419]
 gi|150029927|gb|ABR62044.1| DNA gyrase, B subunit [Sinorhizobium medicae WSM419]
          Length = 811

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 237/574 (41%), Positives = 344/574 (59%), Gaps = 16/574 (2%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAG 92
           +     A   Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG
Sbjct: 5   SETEAGAIAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAG 64

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           +A+L+ V+L+ +G +TV DNGRGIP + H +    S  E+I+T LHAGGKFD ++Y++SG
Sbjct: 65  HADLVTVTLNPDGSVTVTDNGRGIPTDIHRE-EGVSAAEVIMTQLHAGGKFDQNSYKVSG 123

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS  L + + R   I    F+ G+   PL+      +  GT +TF P 
Sbjct: 124 GLHGVGVSVVNALSVSLKLKIRRSGKIHEMSFTHGVADGPLKVTGDAGSDTGTEVTFTPS 183

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            + F +   F+ ARL    +  A+L+  V+   +  +    +      EE  + GGL+ +
Sbjct: 184 EQTFSNI-EFEFARLEHRLRELAFLNSGVRIVLTDKRHSDIRR-----EELMYDGGLEAF 237

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           +      +  +  +  + + EK G    TVE A+ W +     +  + N I   +GGTH 
Sbjct: 238 VAYLDRAKKPLVQKPVSIRGEKDGI---TVEVAMWWNDSYHENMLCFTNNIPQRDGGTHM 294

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G R ALTR I  YA+ +    K  +S+  DD       +LSV + +P+F+ QTK KLVS
Sbjct: 295 AGFRAALTRQITSYADSSGVTKKEKVSLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVS 354

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448
            + +  VE+ + +    +L ++P +A  L+  V+E +  R   RK RE   RK A+    
Sbjct: 355 SEVRPVVESLVNEALGVWLEEHPSDAKILVGKVVEAAAAREAARKARELTRRKGALDISS 414

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS+     +ELF+VEGDSAGGSAKQ R+R +QA+LPLRGKILNV  A  +K+ 
Sbjct: 415 LPGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRESQAILPLRGKILNVERARFDKML 474

Query: 509 NNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
           ++Q+I  L+ ALG          + LRY K+IIMTDADVDGAHI +LLLTFF+++M  LI
Sbjct: 475 SSQEIGTLITALGTSIGPDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPVLI 534

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           E+ HL++  PPL+++ +G    Y  DE+  +  L
Sbjct: 535 ERGHLYIAQPPLYKVARGKSVQYLKDEKALEDYL 568



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 10/114 (8%)

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           ++   PP+ R   GT+ +        + +L+     G+  + + R+KGLGEM A QL ET
Sbjct: 707 VYGA-PPMLRRRDGTQEISG-----PRALLDAIFAAGRKGLTMQRYKGLGEMNAEQLWET 760

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +D N R+LL+V++N       D     ++LMG + + R  FIQE A  + ++ 
Sbjct: 761 TLDPNVRSLLQVKVNDAT----DADGLFSRLMGDEVEPRRDFIQENALSVANLD 810


>gi|58038495|ref|YP_190459.1| DNA gyrase subunit B [Gluconobacter oxydans 621H]
 gi|58000909|gb|AAW59803.1| DNA gyrase subunit B [Gluconobacter oxydans 621H]
          Length = 814

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 222/584 (38%), Positives = 337/584 (57%), Gaps = 17/584 (2%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85
                +      +  ++Y ASSI +L+GL+ VR RPGMYIG TD+   LHH+  E+IDNA
Sbjct: 1   MSETQNQPEIPGADGEDYGASSISVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEIIDNA 60

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE  AG+A    ++L+G+G ++V D+GRGIP + HP+    S  E++LT LHAGGKF+ 
Sbjct: 61  VDEAQAGHATYCILTLNGDGSVSVRDDGRGIPTDLHPE-EGISAAEVVLTKLHAGGKFNQ 119

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG +VVNALS+ + V + R       +F  G     L         RGT
Sbjct: 120 NSYKVSGGLHGVGAAVVNALSEWMEVRIWRNGLEHKIRFQHGERDEALHVIGPSSEDRGT 179

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            +TF+P  + F     FD + L +  +  A+L+  +      ++     +  P++  F++
Sbjct: 180 LVTFKPSKQTFTKV-DFDISILERRVRELAFLNSGMLIILRDER-----HAEPKELRFHY 233

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GGL  + +    +++ I +   TG+          VE+A+ W +     +  + N I  
Sbjct: 234 DGGLSAFAEWLDSSKTSIVTPPITGEI-DNPESGIRVEFALTWNDSYHETMLCFTNNIPQ 292

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
            +GGTH +G R ALTR + KYAE    + A S+  +D+      +LSV + +P+F+ QTK
Sbjct: 293 RDGGTHLAGFRQALTRVVGKYAEGVAKREAGSLTGEDMREGMTAVLSVKVPDPKFSSQTK 352

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA- 443
            KLVS + Q  V  A  D   H+   +P EA  ++  +I+ +  R   R+ RE+ R+   
Sbjct: 353 DKLVSSEVQPVVHAAASDAISHWFETHPKEAKAIVAKIIDAASAREAARRARELTRRKGV 412

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +  A   E+FIVEGDSAGG+AKQ R+R  QA+LPLRGKILNV  A 
Sbjct: 413 LDVSSLPGKLADCQERDASKAEIFIVEGDSAGGTAKQGRDRRFQAILPLRGKILNVERAR 472

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREE------DLRYEKVIIMTDADVDGAHIASLLLT 557
            +++  + +I  L+ ALG        ++       LRY K++IMTDADVDG+HI +LLLT
Sbjct: 473 FDRMLGSAEIGTLITALGTGIGRGEVDQGGFSAEKLRYHKIVIMTDADVDGSHIRTLLLT 532

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           FF+++M +LIEQ +L++  PPL+R  +G +  Y  D+   ++ L
Sbjct: 533 FFFRQMPELIEQGYLYIAQPPLYRAKRGQEERYLKDDAALEQYL 576



 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            ++E     G+  + I+RFKGLGEM   QL  T +D + RTLL+V +      ++D    
Sbjct: 731 AVMERILLQGRRGLTINRFKGLGEMNDEQLWHTTLDPSTRTLLQVRVGD----VEDAGQV 786

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            + LMG   + R  FI   A  + ++ 
Sbjct: 787 FSTLMGDVVEPRRDFIVGNALKVANLD 813


>gi|17548157|ref|NP_521559.1| DNA gyrase subunit B [Ralstonia solanacearum GMI1000]
 gi|17430464|emb|CAD16937.1| probable dna gyrase (subunit b) protein [Ralstonia solanacearum
           GMI1000]
          Length = 842

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 227/594 (38%), Positives = 343/594 (57%), Gaps = 36/594 (6%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIA 91
              +  + S +Y A+SI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +A
Sbjct: 6   KPQSTPAESSSYGAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALA 65

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTY 148
           G+   I V++  +  ++V+DNGRGIP          P +S  EI++T LHAGGKFD ++Y
Sbjct: 66  GHCTEIHVTIHTDNSISVIDNGRGIPTGIKFDDKHEPKRSAAEIVMTELHAGGKFDQNSY 125

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP---------------- 192
           ++SGGLHGVG+S VN LS  L +TV R   +   +F+RGIP +                 
Sbjct: 126 KVSGGLHGVGVSCVNGLSKWLKLTVRRDGRVHHMEFARGIPQNRLLEPAEAPDGKTVEVS 185

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
             +     +KRGT + F  D +IF +   +    L K  +  ++L+  V    +  +   
Sbjct: 186 PLRVSGTTDKRGTEVHFLADEEIFTNV-EYHYEILSKRIRELSFLNNGVHIKLTDQR--- 241

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-E 311
                 ++E+F F GG+K +++   +N++++   +F    EK G     VE ++ W +  
Sbjct: 242 ----TGKEEDFAFSGGVKGFVEYINKNKTVLHPTVFNATGEKDGV---GVEVSMQWNDGF 294

Query: 312 NPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369
           N ++  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +
Sbjct: 295 NEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCV 354

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           LSV + EP+F+ QTK KLVS + +  VE  +      +L++ P +A  +   ++E +  R
Sbjct: 355 LSVKVPEPKFSSQTKDKLVSSEVRLPVEEVVAKALADFLLETPNDAKIICGKIVEAARAR 414

Query: 430 LRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
              RK RE+ R+   +  + LPGKLADC +     +ELFIVEGDSAGGSAKQ R+R  QA
Sbjct: 415 EAARKAREMTRRKGVLDGMGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQA 474

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVD 547
           +LPL+GKILNV  A  +K+ ++Q+++ L+ A+G          + LRY ++IIMTDADVD
Sbjct: 475 ILPLKGKILNVERARFDKMLSSQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVD 534

Query: 548 GAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           G+HI +LLLTFFY++M ++IE+ H+++  PPL++I  G +  Y  D+      L
Sbjct: 535 GSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYKIKHGKEERYIKDDVEMAAYL 588



 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
                +       +  I   R+KGLGEM  SQL ET MD  +R LL+V+I   +      
Sbjct: 756 DFHAAITWLLGEAERGISRQRYKGLGEMNPSQLWETTMDVTQRRLLKVQIEDAI----AA 811

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
                 LMG   + R  FI+  A    ++ 
Sbjct: 812 DQIFTTLMGDDVEPRRNFIESNALVARNID 841


>gi|118594216|ref|ZP_01551563.1| DNA gyrase subunit B [Methylophilales bacterium HTCC2181]
 gi|118439994|gb|EAV46621.1| DNA gyrase subunit B [Methylophilales bacterium HTCC2181]
          Length = 803

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 230/565 (40%), Positives = 337/565 (59%), Gaps = 18/565 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +Y+A SI+IL+GL+ VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ N I+V +
Sbjct: 11  DYNADSIKILKGLDAVRKRPGMYIGDTSDGSGLHHMVFEVLDNAIDESLAGHCNDIKVII 70

Query: 102 DGNGFLTVVDNGRGIPVENHPKFP-NKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
             +  +TV DNGRGIP +        +S  EI++T LHAGGKFD ++Y++SGGLHGVG+S
Sbjct: 71  HADNSITVTDNGRGIPTDIKEDDEFKRSAAEIVMTELHAGGKFDQNSYKVSGGLHGVGVS 130

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALSD L + V R   +   +F RG  ++PL+      +K GT +TF P  + F +  
Sbjct: 131 VVNALSDWLRLRVYRAGKVHEVEFKRGERVAPLKAVGDT-DKTGTEVTFLPSTETFNNV- 188

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L K  +  ++L+  VK      +         + E F F GG+K ++Q    ++
Sbjct: 189 DFHFELLCKRIRELSFLNNGVKIELIDHRS-------GKSENFEFSGGIKGFVQYMNRSK 241

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
           +++    F    EK+G    +++ ++ W +   E    + N I   +GGTH +GLR A+T
Sbjct: 242 NVLHQTPFHAFAEKEGI---SIDVSMQWNDSYGENVQCFTNNIPQRDGGTHLTGLRAAMT 298

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y E  +   K  +    DD+      +LSV + EP+F+ QTK KLVS + Q  V+
Sbjct: 299 RTINTYIESNELAKKAKVDTGGDDMREGLTCVLSVKVPEPKFSSQTKDKLVSSEVQPVVQ 358

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADC 456
           + +      YL+++P +A  +   +++ +  R   RK      RK A+  L LPGKLADC
Sbjct: 359 DLVGKKLTDYLLEHPKDAKIICNKIVDAARAREAARKARDMTRRKGAMDSLGLPGKLADC 418

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            +      E+++VEGDSAGGSAKQ R+R NQA+LPL+GKILNV  A  +KI ++Q+I  L
Sbjct: 419 QEKDPAQCEVYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVMKARLDKILSSQEITTL 478

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + ALG      +    LRY ++IIMTDADVDGAHI +LLLTFF+++M  L+E+ H+F+  
Sbjct: 479 ITALGAGIGQDFDVAKLRYHRIIIMTDADVDGAHIRTLLLTFFFRQMPQLVEKGHIFIAQ 538

Query: 577 PPLFRITQGTKSVYAHDEEHKQKIL 601
           PPL+++ QG    Y  DE+   + L
Sbjct: 539 PPLYKVKQGKDERYLKDEQELDQYL 563



 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 16/122 (13%)

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
            +LI+   +         IT+G KS    +     + L       K  + I R+KGLGEM
Sbjct: 697 KNLIDDGAV---------ITRGEKSKPVVN---FTQALAWLIDEAKNTLNIQRYKGLGEM 744

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
             SQL ET MD   RTLL+V I        + + +  +LMG + + R +FI+E A   ++
Sbjct: 745 NPSQLWETTMDPEVRTLLQVTIED----FTELEATFERLMGDQVEPRRQFIEENALGANN 800

Query: 684 VG 685
           + 
Sbjct: 801 LD 802


>gi|167582968|ref|ZP_02375842.1| DNA gyrase subunit B [Burkholderia thailandensis TXDOH]
          Length = 822

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 235/593 (39%), Positives = 339/593 (57%), Gaps = 33/593 (5%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95
           N    ++Y ASSI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +AGY N
Sbjct: 6   NSQPENSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYCN 65

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
            I V++  +  ++V DNGRGIP +        P +S  EI++T LHAGGKFD ++Y++SG
Sbjct: 66  DIHVTIHADNSISVTDNGRGIPTDVKLNDKHEPKRSAAEIVMTELHAGGKFDQNSYKVSG 125

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKVR 200
           GLHGVG+S VNALS  L +TV R       +F RGI             +SP++      
Sbjct: 126 GLHGVGVSCVNALSSWLRLTVRRDGKKHFMEFHRGIAQNRVLEERDGEQVSPMQVIGDTE 185

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
           N RGT + F  D  IFG    +    L K  +  ++L+  V+   +  +   E       
Sbjct: 186 N-RGTEVHFMADQTIFGTV-EYHYDILAKRIRELSFLNNGVRIRLTDQRSGKEDD----- 238

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
             F F GG+K +++   + +S++   IF    EK G     VE A+ W +     +  + 
Sbjct: 239 --FAFAGGVKGFVEYINKTKSVLHPTIFHINGEKDGV---GVEVAMQWNDSYNENVLCFT 293

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + EP
Sbjct: 294 NNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLSCVLSVKVPEP 353

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F+ QTK KLVS + +  VE  +    + +L++ P +A  +   ++E +  R   RK RE
Sbjct: 354 KFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKARE 413

Query: 438 VNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
           + R+   +  + LPGKLADC +     +E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+
Sbjct: 414 MTRRKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKV 473

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLL 555
           LNV  A  +K+ +++QI+ LV ALGC         + LRY ++IIMTDADVDGAHI +LL
Sbjct: 474 LNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLL 533

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           LTFFY++M ++IE+ ++++  PPL+++  G    Y  D+      +      G
Sbjct: 534 LTFFYRQMPEMIERGYVYIAQPPLYKVKAGRDERYLKDDTELNAHMLRLALQG 586



 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 4/93 (4%)

Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652
           +    ++ ++      +  +   R+KGLGEM   QL ET MD   R LLRV+I   +   
Sbjct: 733 NVADFKEAMKWLMADAERNMSKQRYKGLGEMNPEQLWETTMDPAVRRLLRVQIEDAI--- 789

Query: 653 KDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
                    LMG + + R  FI+  A    ++ 
Sbjct: 790 -AADGIFTTLMGDEVEPRRAFIENNALRAGNID 821


>gi|161723181|ref|YP_443735.2| DNA gyrase subunit B [Burkholderia thailandensis E264]
 gi|167620901|ref|ZP_02389532.1| DNA gyrase subunit B [Burkholderia thailandensis Bt4]
          Length = 822

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 235/593 (39%), Positives = 339/593 (57%), Gaps = 33/593 (5%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95
           N    ++Y ASSI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +AGY N
Sbjct: 6   NSQPENSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYCN 65

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
            I V++  +  ++V DNGRGIP +        P +S  EI++T LHAGGKFD ++Y++SG
Sbjct: 66  DIHVTIHADNSISVTDNGRGIPTDVKLNDKHEPKRSAAEIVMTELHAGGKFDQNSYKVSG 125

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKVR 200
           GLHGVG+S VNALS  L +TV R       +F RGI             +SP++      
Sbjct: 126 GLHGVGVSCVNALSSWLRLTVRRDGKKHFMEFHRGIAQNRVLEERDGEQVSPMQVIGDTE 185

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
           N RGT + F  D  IFG    +    L K  +  ++L+  V+   +  +   E       
Sbjct: 186 N-RGTEVHFMADSTIFGTV-EYHYDILAKRIRELSFLNNGVRIRLTDQRSGKEDD----- 238

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
             F F GG+K +++   + +S++   IF    EK G     VE A+ W +     +  + 
Sbjct: 239 --FAFAGGVKGFVEYINKTKSVLHPTIFHINGEKDGV---GVEVAMQWNDSYNENVLCFT 293

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + EP
Sbjct: 294 NNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLSCVLSVKVPEP 353

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F+ QTK KLVS + +  VE  +    + +L++ P +A  +   ++E +  R   RK RE
Sbjct: 354 KFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKARE 413

Query: 438 VNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
           + R+   +  + LPGKLADC +     +E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+
Sbjct: 414 MTRRKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKV 473

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLL 555
           LNV  A  +K+ +++QI+ LV ALGC         + LRY ++IIMTDADVDGAHI +LL
Sbjct: 474 LNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLL 533

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           LTFFY++M ++IE+ ++++  PPL+++  G    Y  D+      +      G
Sbjct: 534 LTFFYRQMPEMIERGYVYIAQPPLYKVKAGRDERYLKDDTELNAHMLRLALQG 586



 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 4/93 (4%)

Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652
           +    ++ ++      +  +   R+KGLGEM   QL ET MD   R LLRV+I   +   
Sbjct: 733 NVADFKEAMKWLMADAERNMSKQRYKGLGEMNPEQLWETTMDPAVRRLLRVQIEDAI--- 789

Query: 653 KDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
                    LMG + + R  FI+  A    ++ 
Sbjct: 790 -AADGIFTTLMGDEVEPRRAFIENNALRAGNID 821


>gi|56552479|ref|YP_163318.1| DNA gyrase subunit B [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56544053|gb|AAV90207.1| DNA gyrase, B subunit [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 812

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 223/576 (38%), Positives = 340/576 (59%), Gaps = 20/576 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
            A     D+YDA SI++L GL+ VR RPGMYIG TD+   LHH+  EV DNA+DE +AGY
Sbjct: 1   MATSKQHDDYDAGSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEALAGY 60

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST----YE 149
            +L+++++  +G ++V DNGRGIP   HP+    S  E+I+T LHAGGKFDN+     Y+
Sbjct: 61  CDLVKIAIYDDGSVSVEDNGRGIPTGIHPE-EGVSAAEVIMTQLHAGGKFDNNANSNAYK 119

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALSD L +TV R       +F  G+ + PL+      +KRGTR+ F
Sbjct: 120 VSGGLHGVGVSVVNALSDYLELTVWRDGQEHRMRFEHGVAVEPLQVVG-ASDKRGTRVRF 178

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F     F+  +L    +  A+L+  V+   +  +   EK         ++ GG+
Sbjct: 179 HPSAETFK-ITEFNFEKLEHRYRELAFLNSGVRLQLTDKRTDPEKTVE-----LFYEGGI 232

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPEITSYCNTILTDEGG 328
             +++     ++ +  E      ++        +EW  ++     ++  + N I   +GG
Sbjct: 233 AAFVKWLDRAKTALIPEPVAIHGDRDDVMIDVALEWNDSY---YEQVLCFTNNIPQRDGG 289

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +  R ALTR +  YA+ +    K  + +  DD+      I+SV + +P+F+ QTK K
Sbjct: 290 THLAAFRAALTRTLNNYADKSGLLKKEKVQLTGDDMREGLTAIISVKLPDPKFSSQTKDK 349

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IR 445
           LVS + ++ +E+ + D    +L +NP  A  +++ +I+ +  R   ++ RE+ R+   + 
Sbjct: 350 LVSSEVRQPLESLMADKMAEWLEENPAHAKVIIQKIIDAAAAREAAKRARELTRRKGVMD 409

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC +     +E+FIVEGDSAGGSAKQ RNR NQA+LPL+GKILN   +  +
Sbjct: 410 IASLPGKLADCQERDPTKSEIFIVEGDSAGGSAKQGRNRHNQAILPLKGKILNTERSRLD 469

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           ++ +++++  L+QALG   R ++    LRY K++IMTDADVDGAHI +LLLTFFY+ M +
Sbjct: 470 RMLSSKEVGTLIQALGTGIRDEFNIAKLRYHKIVIMTDADVDGAHIRTLLLTFFYRHMPE 529

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +IE  HL++  PPLF++ +    VY  DE      L
Sbjct: 530 IIENGHLYIAQPPLFKVAKNRSEVYLKDEAALDNYL 565



 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           ++ E     G   + ISR+KGLGEM   QL ET +D   R++L+VE+ +         + 
Sbjct: 729 QLFEAILAVGSKGLSISRYKGLGEMNPEQLWETTLDPANRSMLKVEVEQ----ADVADEI 784

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            ++LMG   + R  FIQ+ A  + ++ 
Sbjct: 785 FSRLMGDVVEPRRDFIQQNALSVANLD 811


>gi|326561746|gb|EGE12081.1| DNA gyrase subunit B [Moraxella catarrhalis 7169]
          Length = 819

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 224/581 (38%), Positives = 336/581 (57%), Gaps = 18/581 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85
                +      +    Y A ++R+L GLE VR+RPGMYIG TD+   LHH+  EV+DNA
Sbjct: 1   MTDNTNNHPQVDAQEIEYTAKNVRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNA 60

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AG+ + I + +  +  ++V+DNGRGIPV+ HP+    S  E+I+T LHAGGKFD+
Sbjct: 61  IDEALAGHCDEINIIVHDDESVSVMDNGRGIPVDTHPE-EGVSAAEVIMTVLHAGGKFDD 119

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +L +T+ R     +Q ++ G+P +PL K E    + GT
Sbjct: 120 NSYKVSGGLHGVGVSVVNALSKKLILTIWRDGYAHTQNYTDGVPDAPLAKLEPST-QTGT 178

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           ++ F P  +IF     FD   L K  +  ++L+  V+   + ++           + F  
Sbjct: 179 QVRFYPSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDER-------TSTTQVFEH 231

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GGL  ++      +  ++           G     VE A+ W +    ++  + N I  
Sbjct: 232 KGGLSEFVSYINGGKHTLNDIFHF---TADGADGIGVEVALQWSDSYNEKVLCFTNNIPQ 288

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH SG R ALTR +  Y +      K  + I  DD       I+SV + +P+F+ Q
Sbjct: 289 KDGGTHLSGFRSALTRCLNHYLDSENITKKEKVQITGDDAREGLTAIISVKVPDPKFSSQ 348

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441
           TK KLVS + +  VE A+ +    YL++NP  A  +   +I+ +  R   RK      RK
Sbjct: 349 TKDKLVSSEVKSVVETAMHERLSEYLLENPTAAKMIASKIIDAARARDAARKAREMTRRK 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR  QA+LPL+GKILNV  
Sbjct: 409 STLDIAGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +K+ ++ ++  L+ ALG      +Y  + +RY K++IMTDADVDG+HI +LLLTFF+
Sbjct: 469 ARFDKMLSSAEVGTLITALGTGIGPDEYNPDKIRYHKIVIMTDADVDGSHIRTLLLTFFF 528

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++M +LIE+ H+++  PPL+++ +G + VY  D E     L
Sbjct: 529 RQMPELIERGHIYIAQPPLYKVKRGKQEVYLKDTEALDAYL 569



 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 8/105 (7%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K     D    + + ++     +  +++ R+KGLGEM   QL ET MD   R +L
Sbjct: 723 LRRGDKDFIIKD---FEYLWQQLMLAARRGVDVQRYKGLGEMNKEQLWETTMDPENRRML 779

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           ++ I   +          + LMG + + R  FI+E A   D + T
Sbjct: 780 KITIEDAIK----ADHLFSCLMGDEVEPRRIFIEENALNAD-IDT 819


>gi|158954862|gb|ABW84388.1| DNA topoisomerase IV subunit B [Spiroplasma eriocheiris]
 gi|158954868|gb|ABW84391.1| DNA topoisomerase IV subunit B [Spiroplasma sp. SHRIMP]
          Length = 568

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 222/585 (37%), Positives = 316/585 (54%), Gaps = 26/585 (4%)

Query: 60  MRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119
            RPGMYIG TD + LHHL  E++DN++DE +AG+A+ I + +  N  +TV DNGRG+P+ 
Sbjct: 1   KRPGMYIGSTDIRGLHHLVWEIVDNSIDEALAGFASEINIIIHKNNGITVKDNGRGVPIG 60

Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179
            H     KST E+I + LHAGGKF    Y+ SGGLHGVG SVVNALS E  VT+ R   I
Sbjct: 61  KH--ASGKSTPEVIFSVLHAGGKFGGDGYKTSGGLHGVGSSVVNALSSEFDVTIYRDKKI 118

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
            + KF+ G  L+            GT + F PDP+IF     F  + + +  +  A+L+ 
Sbjct: 119 SNIKFNNGGKLAQKLTTIGSTATTGTTVYFVPDPEIFKVI-DFSFSTISERIRESAFLNS 177

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            +K     ++         +  E+ F  GL+ ++    E +  I+  I     EK     
Sbjct: 178 GLKITLQDER-------TDKYVEYLFNNGLEEFITYMNEGKKPITPIITFKGIEKDIDVE 230

Query: 300 GTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISI 357
             ++++    E N  + S+ N + T +GG+H  G R  LT+ I +YA       ++  ++
Sbjct: 231 IALQYST---EFNENLLSFANNVKTSDGGSHVVGFRTGLTKVINEYARKEGLLKEKDKNL 287

Query: 358 ISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415
            S D       I+SV I E   ++ GQTK KL + DA+  VEN +      ++++N   A
Sbjct: 288 DSTDTREGLTAIISVKIPESLIQYEGQTKGKLGTSDAKTAVENIVAKQMQFWMLENKTNA 347

Query: 416 TKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKLADCSQNIAHGTELFIVEGD 472
             ++E  +     +   RK RE  R    +      L GKL           ELF+VEGD
Sbjct: 348 YAIIEKALLARTAKEEARKAREAARGNKRKSNSERLLTGKLTPAQNKNKKVNELFLVEGD 407

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           SAGGSAK  R+R  QA+L LRGK++N   A  + + NN++I  ++ A+G    + +  ED
Sbjct: 408 SAGGSAKSGRDRKFQAILSLRGKVINAEKAKLQDLMNNEEINLMIHAIGAGFGNNFDLED 467

Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT--QGTKSVY 590
             Y K+IIMTDAD DGAHI +LLLTFFY+ M  LIE K +++  PPLF+IT  +  K  Y
Sbjct: 468 ANYGKIIIMTDADTDGAHIQTLLLTFFYRFMRPLIEDKRVYIALPPLFKITNLKTKKVSY 527

Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
           A DE   +  L+  K     K E+ R+KGLGEM A QL ET MD 
Sbjct: 528 AWDENELKTKLKHLKD----KFELQRYKGLGEMNAEQLWETTMDP 568


>gi|167822114|ref|ZP_02453585.1| DNA gyrase subunit B [Burkholderia pseudomallei 9]
 gi|226193304|ref|ZP_03788914.1| DNA gyrase, B subunit [Burkholderia pseudomallei Pakistan 9]
 gi|225934904|gb|EEH30881.1| DNA gyrase, B subunit [Burkholderia pseudomallei Pakistan 9]
          Length = 822

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 234/593 (39%), Positives = 338/593 (56%), Gaps = 33/593 (5%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95
           N    ++Y ASSI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +AGY N
Sbjct: 6   NSQPENSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYCN 65

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
            I V++  +  ++V DNGRGIP +        P +S  EI++T LHAGGKFD ++Y++SG
Sbjct: 66  DIHVTIHADNSISVTDNGRGIPTDVKLNDKHEPKRSAAEIVMTELHAGGKFDQNSYKVSG 125

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKVR 200
           GLHGVG+S VNALS  L + V R       +F RGI             +SP++   +  
Sbjct: 126 GLHGVGVSCVNALSSWLRLIVRRDGKKHFMEFHRGIAQNRVLEERDGEQVSPMQVIGETE 185

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
           N RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E       
Sbjct: 186 N-RGTEVHFMADPTIFGTV-EYHYDILAKRIRELSFLNNGVRIRLTDLRSGKEDD----- 238

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
             F F GG+K +++   + +S++   IF    EK       VE A+ W +     +  + 
Sbjct: 239 --FAFAGGVKGFVEYINKTKSVLHPTIFHINGEKDSV---GVEVAMQWNDSYNENVLCFT 293

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + EP
Sbjct: 294 NNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETTGDDMREGLSCVLSVKVPEP 353

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F+ QTK KLVS + +  VE  +    + +L++ P +A  +   ++E +  R   RK RE
Sbjct: 354 KFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKARE 413

Query: 438 VNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
           + R+   +  + LPGKLADC +     +E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+
Sbjct: 414 MTRRKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKV 473

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLL 555
           LNV  A  +K+ +++QI+ LV ALGC         + LRY ++IIMTDADVDGAHI +LL
Sbjct: 474 LNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLL 533

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           LTFFY++M ++IE  ++++  PPL+++  G    Y  D+      +      G
Sbjct: 534 LTFFYRQMPEMIEHGYVYIAQPPLYKVKAGRDERYLKDDTELNAHMLRLALQG 586



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             ++ ++      +  +   R+KGLGEM   QL ET MD   R LLRV+I   +      
Sbjct: 736 DFKEAMKWLMADAERNLSKQRYKGLGEMNPEQLWETTMDPAVRRLLRVQIEDAI----AA 791

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
                 LMG + + R  FI+  A    ++ 
Sbjct: 792 DGIFTTLMGDEVEPRRAFIENNALRAGNID 821


>gi|300689717|ref|YP_003750712.1| DNA gyrase, subunit B (type II topoisomerase) [Ralstonia
           solanacearum PSI07]
 gi|299076777|emb|CBJ49384.1| DNA gyrase, subunit B (type II topoisomerase) [Ralstonia
           solanacearum PSI07]
          Length = 838

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 226/591 (38%), Positives = 338/591 (57%), Gaps = 36/591 (6%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94
                 ++Y A+SI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +AG+ 
Sbjct: 5   QKPQPENSYGAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGHC 64

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
             I V++  +  ++V DNGRGIP          P +S  EI++T LHAGGKFD ++Y++S
Sbjct: 65  TEIHVTIHTDNSISVTDNGRGIPTGIKFDDKHEPKRSAAEIVMTELHAGGKFDQNSYKVS 124

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP----------------LEK 195
           GGLHGVG+S VN LS  L +TV R   +    F+RGIP +                   +
Sbjct: 125 GGLHGVGVSCVNGLSKWLKLTVRRDGRVHHMDFARGIPQNRLLEQAEAPDGKMVEVSPLR 184

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
                +KRGT + F  D +IF +   +    L K  +  ++L+  V    +  +      
Sbjct: 185 VSGTTDKRGTEVHFLADEEIFTNV-EYHYEILSKRIRELSFLNNGVHIKLTDQR------ 237

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPE 314
              ++E+F F GG+K +++   +N++++   +F    EK G     VE ++ W +  N +
Sbjct: 238 -TGKEEDFAFSGGVKGFVEYINKNKTVLHPTVFNATGEKDGV---GVEVSMQWNDGFNEQ 293

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSV 372
           +  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV
Sbjct: 294 VLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCVLSV 353

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
            + EP+F+ QTK KLVS + +  VE  +      +L++ P +A  +   ++E +  R   
Sbjct: 354 KVPEPKFSSQTKDKLVSSEVRLPVEEMVAKALTDFLLETPNDAKIICGKIVEAARAREAA 413

Query: 433 RKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           RK RE+ R+   +  + LPGKLADC +     +ELFIVEGDSAGGSAKQ R+R  QA+LP
Sbjct: 414 RKAREMTRRKGVLDGMGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILP 473

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAH 550
           L+GKILNV  A  +K+ ++Q+++ L+ A+G          + LRY ++IIMTDADVDG+H
Sbjct: 474 LKGKILNVERARFDKMLSSQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVDGSH 533

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           I +LLLTFFY++M  +IE+ H+++  PPL++I  G +  Y  D+      L
Sbjct: 534 IRTLLLTFFYRQMPAIIERGHVYIAQPPLYKIKHGKEERYIKDDVEMAAYL 584



 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
                +       +  I   R+KGLGEM  SQL ET MD  +R LL+V+I   +      
Sbjct: 752 DFHAAITWLLGEAERGISRQRYKGLGEMNPSQLWETTMDVTQRRLLKVQIEDAI----AA 807

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
                 LMG   + R  FI+  A    ++ 
Sbjct: 808 DQIFTTLMGDDVEPRRNFIESNALVARNID 837


>gi|326569033|gb|EGE19102.1| DNA gyrase subunit B [Moraxella catarrhalis BC1]
          Length = 819

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 224/581 (38%), Positives = 336/581 (57%), Gaps = 18/581 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85
                +      +    Y A ++R+L GLE VR+RPGMYIG TD+   LHH+  EV+DNA
Sbjct: 1   MTDNTNNHPQVDAQEIEYTAKNVRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNA 60

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AG+ + I + +  +  ++V+DNGRGIPV+ HP+    S  E+I+T LHAGGKFD+
Sbjct: 61  IDEALAGHCDEINIIVHDDESVSVMDNGRGIPVDTHPE-EGVSAAEVIMTVLHAGGKFDD 119

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +L +T+ R     +Q ++ G+P +PL K E    + GT
Sbjct: 120 NSYKVSGGLHGVGVSVVNALSKKLILTIWRDGYAHTQNYTDGVPDAPLAKLEPST-QTGT 178

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           ++ F P  +IF     FD   L K  +  ++L+  V+   + ++           + F  
Sbjct: 179 QVRFYPSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDER-------TSTTQVFEH 231

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GGL  ++      +  ++           G     VE A+ W +    ++  + N I  
Sbjct: 232 KGGLSEFVSYINGGKHTLNDIFHF---TADGADGIGVEVALQWSDSYNEKVLCFTNNIPQ 288

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH SG R ALTR +  Y +      K  + I  DD       I+SV + +P+F+ Q
Sbjct: 289 KDGGTHLSGFRSALTRCLNHYLDSENITKKEKVQITGDDAREGLTAIISVKVPDPKFSSQ 348

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441
           TK KLVS + +  VE A+ +    YL++NP  A  +   +I+ +  R   RK      RK
Sbjct: 349 TKDKLVSSEVKSVVETAMHERLSEYLLENPTAAKMIASKIIDAARARDAARKAREMTRRK 408

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR  QA+LPL+GKILNV  
Sbjct: 409 STLDIAGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +K+ ++ ++  L+ ALG      +Y  + +RY K++IMTDADVDG+HI +LLLTFF+
Sbjct: 469 ARFDKMLSSAEVGTLITALGTGIGPDEYNPDKIRYHKIVIMTDADVDGSHIRTLLLTFFF 528

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++M +LIE+ H+++  PPL+++ +G + VY  D E     L
Sbjct: 529 RQMPELIERGHIYIAQPPLYKVKRGKQEVYLKDTEALDAYL 569



 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 8/105 (7%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K     D    + + ++     +  +++ R+KGLGEM   QL ET MD   R +L
Sbjct: 723 LRRGDKDFIIKD---FEYLWQQLMLAARRGVDVQRYKGLGEMNKEQLWETTMDPENRRML 779

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           ++ I   +          + LMG + + R  FI+E A   D + T
Sbjct: 780 KITIEDAIK----ADHLFSCLMGDEVEPRRIFIEENALNAD-IDT 819


>gi|119503576|ref|ZP_01625659.1| DNA gyrase subunit B [marine gamma proteobacterium HTCC2080]
 gi|119460638|gb|EAW41730.1| DNA gyrase subunit B [marine gamma proteobacterium HTCC2080]
          Length = 809

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 226/579 (39%), Positives = 340/579 (58%), Gaps = 20/579 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYA 94
            +   S NYD+ SI++L+GL+ VR RPGMYIG TD+   LHH+  E++DN++DE +AG+ 
Sbjct: 4   NSTQGSGNYDSDSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFELVDNSIDEALAGHC 63

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I V +  +  ++V D+GRGIP E H      S  E+I+T LHAGGKFD++TY++SGGL
Sbjct: 64  SKISVVIHPDESVSVGDDGRGIPTEMHE--EGVSAAEVIMTVLHAGGKFDDNTYKVSGGL 121

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS+ L +T+ RQ  +  Q +  G+P++PL    +     GT + F+P  +
Sbjct: 122 HGVGVSVVNALSEHLQLTIRRQGELHEQVYKHGVPVAPLAVVGET-ESTGTSVRFKPSAE 180

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
            F +   F    L K  +  A+L+  V    + ++           E + + GGL  +++
Sbjct: 181 TFTNI-EFHFDILGKRLRELAFLNSGVCIELTDERSA-------RTETYAYDGGLNAFVE 232

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              + ++ I+        E        VE A+ W +     I  Y N I   +GGTH +G
Sbjct: 233 FLNKGKNTINK---VFHCETIADGDVGVEVALQWNDSFQENILCYTNNIPQRDGGTHLAG 289

Query: 334 LRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS +
Sbjct: 290 FRAALTRTLNNYIEKESLAKKAKVNTTGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSE 349

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLP 450
            +  VE +L   F  YL++NP +A  ++  +I+ +  R   RK      RK A+    LP
Sbjct: 350 VKPAVEQSLGKIFGEYLLENPQDAKLVVGKMIDAARAREAARKARDMTRRKGALDIAGLP 409

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +      EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+  +
Sbjct: 410 GKLADCQERDPALCELYLVEGDSAGGSAKQGRNRKFQAILPLKGKILNVERARFDKMLGS 469

Query: 511 QQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
            ++ ++V ALGC   ++++  + LRY  +IIMTDADVDG+HI +LLLTFF+++M +LI++
Sbjct: 470 AEVGNIVTALGCGIGKTEFNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQMRELIDR 529

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
            H+++  PPL+++T+G +S Y  DE      L +    G
Sbjct: 530 GHVYIAQPPLYKLTRGKQSQYLKDEAAFDNYLTQNALEG 568



 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 7/103 (6%)

Query: 583 TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLR 642
            +G K       +     L    +  +    + R+KGLGEM   QL ET MD + R +L+
Sbjct: 713 KRGEKQFQT---QEFAAGLGWLLQEARKGTAVQRYKGLGEMNPGQLWETTMDPDVRRMLK 769

Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           V I   +            LMG   + R +FI+E A  ++++ 
Sbjct: 770 VTIEDAI----LADQMFTTLMGDDVEPRREFIEENALAVENLD 808


>gi|53717712|ref|YP_106698.1| DNA gyrase subunit B [Burkholderia pseudomallei K96243]
 gi|53724903|ref|YP_101864.1| DNA gyrase subunit B [Burkholderia mallei ATCC 23344]
 gi|67642369|ref|ZP_00441126.1| DNA gyrase, B subunit [Burkholderia mallei GB8 horse 4]
 gi|76808573|ref|YP_331715.1| DNA gyrase subunit B [Burkholderia pseudomallei 1710b]
 gi|121600538|ref|YP_994144.1| DNA gyrase subunit B [Burkholderia mallei SAVP1]
 gi|124384090|ref|YP_001028199.1| DNA gyrase subunit B [Burkholderia mallei NCTC 10229]
 gi|126439588|ref|YP_001057142.1| DNA gyrase subunit B [Burkholderia pseudomallei 668]
 gi|126451013|ref|YP_001079586.1| DNA gyrase subunit B [Burkholderia mallei NCTC 10247]
 gi|126452573|ref|YP_001064386.1| DNA gyrase subunit B [Burkholderia pseudomallei 1106a]
 gi|134281651|ref|ZP_01768359.1| DNA gyrase, B subunit [Burkholderia pseudomallei 305]
 gi|167001182|ref|ZP_02266981.1| DNA gyrase, B subunit [Burkholderia mallei PRL-20]
 gi|167717460|ref|ZP_02400696.1| DNA gyrase subunit B [Burkholderia pseudomallei DM98]
 gi|167736495|ref|ZP_02409269.1| DNA gyrase subunit B [Burkholderia pseudomallei 14]
 gi|167813573|ref|ZP_02445253.1| DNA gyrase subunit B [Burkholderia pseudomallei 91]
 gi|167843719|ref|ZP_02469227.1| DNA gyrase subunit B [Burkholderia pseudomallei B7210]
 gi|167892198|ref|ZP_02479600.1| DNA gyrase subunit B [Burkholderia pseudomallei 7894]
 gi|167900710|ref|ZP_02487915.1| DNA gyrase subunit B [Burkholderia pseudomallei NCTC 13177]
 gi|167908927|ref|ZP_02496018.1| DNA gyrase subunit B [Burkholderia pseudomallei 112]
 gi|167916968|ref|ZP_02504059.1| DNA gyrase subunit B [Burkholderia pseudomallei BCC215]
 gi|217424084|ref|ZP_03455584.1| DNA gyrase, B subunit [Burkholderia pseudomallei 576]
 gi|237814478|ref|YP_002898929.1| DNA gyrase, B subunit [Burkholderia pseudomallei MSHR346]
 gi|242315971|ref|ZP_04814987.1| DNA gyrase, B subunit [Burkholderia pseudomallei 1106b]
 gi|254174704|ref|ZP_04881365.1| DNA gyrase, B subunit [Burkholderia mallei ATCC 10399]
 gi|254184146|ref|ZP_04890737.1| DNA gyrase, B subunit [Burkholderia pseudomallei 1655]
 gi|254186617|ref|ZP_04893134.1| DNA gyrase, B subunit [Burkholderia pseudomallei Pasteur 52237]
 gi|254194736|ref|ZP_04901167.1| DNA gyrase, B subunit [Burkholderia pseudomallei S13]
 gi|254201969|ref|ZP_04908333.1| DNA gyrase, B subunit [Burkholderia mallei FMH]
 gi|254207301|ref|ZP_04913652.1| DNA gyrase, B subunit [Burkholderia mallei JHU]
 gi|254262120|ref|ZP_04953174.1| DNA gyrase, B subunit [Burkholderia pseudomallei 1710a]
 gi|254298588|ref|ZP_04966039.1| DNA gyrase, B subunit [Burkholderia pseudomallei 406e]
 gi|254359610|ref|ZP_04975881.1| DNA gyrase, B subunit [Burkholderia mallei 2002721280]
 gi|52208126|emb|CAH34056.1| DNA gyrase subunit B [Burkholderia pseudomallei K96243]
 gi|52428326|gb|AAU48919.1| DNA gyrase, B subunit [Burkholderia mallei ATCC 23344]
 gi|76578026|gb|ABA47501.1| DNA gyrase, B subunit [Burkholderia pseudomallei 1710b]
 gi|121229348|gb|ABM51866.1| DNA gyrase, B subunit [Burkholderia mallei SAVP1]
 gi|124292110|gb|ABN01379.1| DNA gyrase, B subunit [Burkholderia mallei NCTC 10229]
 gi|126219081|gb|ABN82587.1| DNA gyrase, B subunit [Burkholderia pseudomallei 668]
 gi|126226215|gb|ABN89755.1| DNA gyrase, B subunit [Burkholderia pseudomallei 1106a]
 gi|126243883|gb|ABO06976.1| DNA gyrase, B subunit [Burkholderia mallei NCTC 10247]
 gi|134247318|gb|EBA47404.1| DNA gyrase, B subunit [Burkholderia pseudomallei 305]
 gi|147747863|gb|EDK54939.1| DNA gyrase, B subunit [Burkholderia mallei FMH]
 gi|147752843|gb|EDK59909.1| DNA gyrase, B subunit [Burkholderia mallei JHU]
 gi|148028824|gb|EDK86756.1| DNA gyrase, B subunit [Burkholderia mallei 2002721280]
 gi|157808695|gb|EDO85865.1| DNA gyrase, B subunit [Burkholderia pseudomallei 406e]
 gi|157934302|gb|EDO89972.1| DNA gyrase, B subunit [Burkholderia pseudomallei Pasteur 52237]
 gi|160695749|gb|EDP85719.1| DNA gyrase, B subunit [Burkholderia mallei ATCC 10399]
 gi|169651486|gb|EDS84179.1| DNA gyrase, B subunit [Burkholderia pseudomallei S13]
 gi|184214678|gb|EDU11721.1| DNA gyrase, B subunit [Burkholderia pseudomallei 1655]
 gi|217393147|gb|EEC33169.1| DNA gyrase, B subunit [Burkholderia pseudomallei 576]
 gi|237505877|gb|ACQ98195.1| DNA gyrase, B subunit [Burkholderia pseudomallei MSHR346]
 gi|238523508|gb|EEP86946.1| DNA gyrase, B subunit [Burkholderia mallei GB8 horse 4]
 gi|242139210|gb|EES25612.1| DNA gyrase, B subunit [Burkholderia pseudomallei 1106b]
 gi|243063009|gb|EES45195.1| DNA gyrase, B subunit [Burkholderia mallei PRL-20]
 gi|254220809|gb|EET10193.1| DNA gyrase, B subunit [Burkholderia pseudomallei 1710a]
          Length = 822

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 234/593 (39%), Positives = 339/593 (57%), Gaps = 33/593 (5%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95
           N    ++Y ASSI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +AGY N
Sbjct: 6   NSQPENSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYCN 65

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
            I V++  +  ++V DNGRGIP +        P +S  EI++T LHAGGKFD ++Y++SG
Sbjct: 66  DIHVTIHADNSISVTDNGRGIPTDVKLNDKHEPKRSAAEIVMTELHAGGKFDQNSYKVSG 125

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKVR 200
           GLHGVG+S VNALS  L + V R       +F RGI             +SP++   +  
Sbjct: 126 GLHGVGVSCVNALSSWLRLIVRRDGKKHFMEFHRGIAQNRVLEERDGEQVSPMQVIGETE 185

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
           N RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E       
Sbjct: 186 N-RGTEVHFMADPTIFGTV-EYHYDILAKRIRELSFLNNGVRIRLTDLRSGKEDD----- 238

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
             F F GG+K +++   + +S++   IF    EK       VE A+ W +     +  + 
Sbjct: 239 --FAFAGGVKGFVEYINKTKSVLHPTIFHINGEKDSV---GVEVAMQWNDSYNENVLCFT 293

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + EP
Sbjct: 294 NNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETTGDDMREGLSCVLSVKVPEP 353

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F+ QTK KLVS + +  VE  +    + +L++ P +A  +   ++E +  R   RK RE
Sbjct: 354 KFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKARE 413

Query: 438 VNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
           + R+   +  + LPGKLADC +     +E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+
Sbjct: 414 MTRRKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKV 473

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLL 555
           LNV  A  +K+ +++QI+ LV ALGC         + LRY ++IIMTDADVDGAHI +LL
Sbjct: 474 LNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLL 533

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           LTFFY++M ++IE+ ++++  PPL+++  G    Y  D+      +      G
Sbjct: 534 LTFFYRQMPEMIERGYVYIAQPPLYKVKAGRDERYLKDDTELNAHMLRLALQG 586



 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             ++ ++      +  +   R+KGLGEM   QL ET MD   R LLRV+I   +      
Sbjct: 736 DFKEAMKWLMADAERNLSKQRYKGLGEMNPEQLWETTMDPAVRRLLRVQIEDAI----AA 791

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
                 LMG + + R  FI+  A    ++ 
Sbjct: 792 DGIFTTLMGDEVEPRRAFIENNALRAGNID 821


>gi|283956181|ref|ZP_06373666.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792335|gb|EFC31119.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 1336]
          Length = 769

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 248/660 (37%), Positives = 362/660 (54%), Gaps = 50/660 (7%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY AS+I++L+GLE VR RPGMYIG T+   LHH+  EV+DN++DE +AG+ + I+V +
Sbjct: 3   ENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVDNSIDEAMAGHCDTIDVEI 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV+ HP   N  TL ++LT LHAGGKFD  TY++SGGLHGVG+SV
Sbjct: 63  TTEGSCIVSDNGRGIPVDMHP-TENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS +L  TV R   I+ Q+FS G  +S      K +   GT I F PD +IF     
Sbjct: 122 VNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSKK-TGTTIEFWPDDQIFEVT-E 179

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L K  +  AYL+ ++   +  ++       + + E F+F GG+  ++    +  +
Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNR-------VGKHESFHFEGGISQFVTDLNKKEA 232

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340
           L  +  F+   E        VE A+ + +   E   S+ N I T +GGTHE+G R+ LTR
Sbjct: 233 LTKAIFFSVDEED-----MNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTR 287

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  Y E      ++   I  +D+    + ++SV + EP+F GQTK KL S   +  V  
Sbjct: 288 VISNYIEANASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVSK 347

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
           A  +    Y  +NPIEA  ++   +  +  R   +K RE   +K ++    LPGKLADC 
Sbjct: 348 ASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQ 407

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +E+++VEGDSAGGSAKQ R RS QA+LPLRGKILNV  A  +KI  ++QI +++
Sbjct: 408 SKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMI 467

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A GC     +    LRY K+IIMTDADVDG+HI +LLLTFF++ M +L+   H++L  P
Sbjct: 468 TAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVTNGHIYLAQP 527

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET------ 631
           PL+   +  K +Y  DE+   + L E    G        ++G+G M    LK+       
Sbjct: 528 PLYLYKKAKKQIYLKDEKALSEYLIETGIEGLN------YEGIG-MND--LKDYLKIVAA 578

Query: 632 ----AMDANKR----TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
                 D  KR    +++R  I        + ++  + +         +F++ +   I +
Sbjct: 579 YRAILKDLEKRFNVISVIRYMIENSNLVKGNNEELFSVI--------KQFLETQGHNILN 630



 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%)

Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
           ++   ++LE+ + + K    I R+KGLGEM   QL ET MD + R LL++ I       +
Sbjct: 681 DKDILEVLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIED----AQ 736

Query: 654 DTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              D+ N  MG + + R  +IQ  A  +  + 
Sbjct: 737 SANDTFNLFMGDEVEPRRDYIQAHAKDVKHLD 768


>gi|253997716|ref|YP_003049779.1| DNA gyrase subunit B [Methylovorus sp. SIP3-4]
 gi|253984395|gb|ACT49252.1| DNA gyrase, B subunit [Methylovorus sp. SIP3-4]
          Length = 799

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 224/568 (39%), Positives = 336/568 (59%), Gaps = 21/568 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +YD+SSI+ILEGL+ VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ + I+V +
Sbjct: 3   DYDSSSIKILEGLDAVRKRPGMYIGDTSDGSGLHHMVFEVLDNAIDEALAGHCDDIKVII 62

Query: 102 DGNGFLTVVDNGRGIPVEN-HP--KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
             +  ++V DNGRGIP +  H   K   +S  EI++T LHAGGKFD ++Y++SGGLHGVG
Sbjct: 63  HPDNSVSVSDNGRGIPTDIKHDDIKAVKRSAAEIVMTELHAGGKFDQNSYKVSGGLHGVG 122

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALSD L + + R   +   +F RG  ++PL        ++GT + F    + FG 
Sbjct: 123 VSVVNALSDWLKLKIYRNGQVHQMEFRRGEAVAPLAITG-TTERKGTEVHFLASIETFGL 181

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  VK      +         + E F   GG++ +++    
Sbjct: 182 V-EFHFEILAKRIRELSFLNNGVKIELIDQR-------NGKSENFAHSGGVRGFVEYMNR 233

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           +++++  + F    EK G    T+E ++ W +     +  + N I   +GGTH +GLR A
Sbjct: 234 SKTVLHPKPFYAVGEKDG---MTIEVSMQWNDSYAETVQCFTNNIPQRDGGTHLTGLRTA 290

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           +TR +  Y E  +   K  I    DD+      +LSV + EP+F+ QTK KLVS + Q  
Sbjct: 291 MTRTLNNYIEQNELAKKAKIETTGDDMREGLTCVLSVKVPEPKFSSQTKDKLVSGEVQPV 350

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           V+  +      +L++NP++A  +   +I+ +  R   RK      RK A+  + LPGKLA
Sbjct: 351 VQEVVAAKLAEFLLENPVDAKVICNKIIDAARARDAARKAREMTRRKGAMDTMGLPGKLA 410

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +      EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++Q+I 
Sbjct: 411 DCQERDPTKCELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKLLSSQEIA 470

Query: 515 DLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            L+ A+G          + LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ H++
Sbjct: 471 TLITAMGTGIGKDDFSADKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMTELVERGHIY 530

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +  PPL+++ QG    Y  D++   + L
Sbjct: 531 IAQPPLYKVKQGKDERYLKDQQELDQYL 558



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G KS    +    +  L+   +  K  + I R+KGLGEM   QL ET MD   R LL
Sbjct: 702 IKRGEKSQPVSN---FKAALDWLLEEAKHNLNIQRYKGLGEMNPEQLWETTMDPTVRRLL 758

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V+I+  +       +    LMG + + R  FI+  A  ++++ 
Sbjct: 759 KVQIDDAI----AADEIFTTLMGDQVEPRRAFIESNALGVNNLD 798


>gi|94496546|ref|ZP_01303122.1| DNA gyrase, B subunit [Sphingomonas sp. SKA58]
 gi|94423906|gb|EAT08931.1| DNA gyrase, B subunit [Sphingomonas sp. SKA58]
          Length = 835

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 222/587 (37%), Positives = 342/587 (58%), Gaps = 26/587 (4%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVI 90
           S    N S  ++Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV DNA+DE +
Sbjct: 2   SEEPLNSSNKNDYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEAL 61

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF----DNS 146
           AG+ + I ++L+ +G ++V DNGRGIP   H K    S  E+I+T LHAGGKF    D++
Sbjct: 62  AGHCDRIVITLNPDGSVSVEDNGRGIPTGIH-KEEGVSAAEVIMTQLHAGGKFENTSDDN 120

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGT 205
            Y++SGGLHGVG+SVVNALS+ L + + R       +F+ G   +PL+        K+GT
Sbjct: 121 AYKVSGGLHGVGVSVVNALSEWLDLNIWRDGKEHYMRFAYGDATAPLKVIGDAPEGKKGT 180

Query: 206 RITFRPDPK-------IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
           R+TF    +        F ++  +D  +L    +  A+L+  V+      +   +K    
Sbjct: 181 RVTFLASTEKAPGDGGTFKNQTDYDFDKLEHRYRELAFLNSGVRLFLVDARHEEKKEVE- 239

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT-HRGTVEWAIAWCEENPEITS 317
                ++ GG+  +++    N++ +  +       +        +EW  ++      +  
Sbjct: 240 ----LFYEGGIAAFVKYLDRNKNALMPDPIAIAGTRDDVTIDVALEWNDSY---YENVLC 292

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +  R ALTR +  YAE +    K  +S+  +D+      I+SV + 
Sbjct: 293 FTNNIPQRDGGTHLAAFRAALTRTLNNYAEKSGALKKEKVSLTGEDMREGLTAIVSVKLP 352

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           +P+F+ QTK KLVS + ++ +E+ + D    +L +NP     +++ VI+ +  R   +K 
Sbjct: 353 DPKFSSQTKDKLVSSEVRQPLESLMADKMAEWLEENPAHGKMIVQKVIDAAAAREAAKKA 412

Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE   RK A+    LPGKLADC +     +ELF+VEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 413 RELTRRKGAMDIASLPGKLADCQERDPAKSELFLVEGDSAGGSAKQGRNRHNQAILPLKG 472

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           KILNV  A  +++ +++++  L+QA+G   R  +  E LRY K++IMTDADVDGAHI +L
Sbjct: 473 KILNVERARFDRMLSSKEVGTLIQAMGTGIRDDFNLEKLRYHKIVIMTDADVDGAHIRTL 532

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           LLTFFY++M  +IE  HL++  PPL++ ++G   VY  +E   ++ L
Sbjct: 533 LLTFFYRQMPQIIEAGHLYIAQPPLYKASRGRSEVYLKNEAALEQYL 579



 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +LE     G+  + I R+KGLGEM A QL ET +D + R++LRVE+ +         + 
Sbjct: 752 DLLEAILAAGRKGLSIQRYKGLGEMNAEQLWETTLDPDNRSMLRVEVEQ----ADIADEI 807

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            ++LMG   + R +FIQ+ A  + ++ 
Sbjct: 808 FSQLMGDVVESRREFIQDNALNVANLD 834


>gi|118602063|ref|YP_903278.1| DNA gyrase subunit B [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567002|gb|ABL01807.1| DNA gyrase subunit B [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 802

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 235/571 (41%), Positives = 343/571 (60%), Gaps = 19/571 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           ++  S  Y ASSI+IL+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   SEKQSQEYQASSIKILKGLDAVRKRPGMYIGDTDDGTGLHHMIFEVVDNAIDEALAGFCS 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I ++L  +  ++V DNGRGIPV+ HPK    S  E+I+T LHAGGKFD+++Y+ISGGLH
Sbjct: 62  KINITLHEDLSISVNDNGRGIPVDIHPK-EGISAAEVIMTMLHAGGKFDDNSYKISGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVGISVVNALS+ + +TV R   I+ Q ++ G+P  P++   K  +K GT I F+P+  I
Sbjct: 121 GVGISVVNALSEWVELTVYRNGKIYFQHYNIGVPNEPIKVIGK-SDKTGTTIHFKPNVDI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     F    L+   +  ++L+  V           ++    +K+ F + GG+K +++ 
Sbjct: 180 FS-ITEFKYDILVNRIRELSFLNLGVHI-------QVKELSTGKKDFFKYKGGIKEFVRY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             + ++ I + I T   ++       +  A+ W +     I  + N I    GG H +G 
Sbjct: 232 LNKAKNPIFNNIITINAQRDDI---EINVALQWSDSYQENIYCFTNNIPQKYGGGHLAGF 288

Query: 335 RVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR    Y   +    K  ISI  +D       I+S+ I  P+F+ QTK KLVS + 
Sbjct: 289 RGALTRTFNNYINNSSIAKKEKISITGEDTREGLTAIISIKIPNPKFSSQTKDKLVSSEV 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPG 451
           +  VE+AL +    YL++NPIEA  ++  +++ S  R   RK RE+  RK  +    LPG
Sbjct: 349 RAPVESALNEKLSDYLLENPIEAKIIIRKILDASHARNAARKAREIIRRKGMLNIADLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL+DC       +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV     EKI ++ 
Sbjct: 409 KLSDCQTKDPTKSEIFLVEGDSAGGSAKQGRDRHTQAILPLKGKILNVEKVRFEKILSSI 468

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALGC   + +Y    LRY K++IMTDADVDGAHI +LLLTFFY+ + +LIE  
Sbjct: 469 EVGTLITALGCGIGKEEYDITKLRYHKIVIMTDADVDGAHIRTLLLTFFYRYLPELIENG 528

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +L++  PPL++I +G +  Y  D +     L
Sbjct: 529 YLYIAQPPLYKIKKGKQECYLKDNQELNDYL 559



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 8/105 (7%)

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           +   +  +       +    +++   K  K      R+KGLGEM   QL ET MD  +RT
Sbjct: 704 YIEKKNKQVK----VDRFSHVVDFLIKDAKKGQSFQRYKGLGEMNPEQLWETTMDPEQRT 759

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           LL+V+I   +       +  + LMG K + R  FI+  A  +D++
Sbjct: 760 LLKVKIEDSIV----ANEVFSTLMGDKVEPRRNFIENNALLVDNL 800


>gi|254784277|ref|YP_003071705.1| DNA gyrase subunit B [Teredinibacter turnerae T7901]
 gi|237686033|gb|ACR13297.1| DNA gyrase, B subunit [Teredinibacter turnerae T7901]
          Length = 808

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 231/571 (40%), Positives = 344/571 (60%), Gaps = 21/571 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANL 96
                NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  E++DN++DE +AG+ + 
Sbjct: 2   SDTEHNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFELVDNSIDEALAGHCSE 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I   +  +  ++V DNGRGIP E H      S  E+I+T LHAGGKFD++TY++SGGLHG
Sbjct: 62  ILAVIHPDESISVSDNGRGIPTEMHE--EGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHG 119

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+SVVNALS +L +T+ R   ++ Q +  G+P +PL    +     GT + F P  + F
Sbjct: 120 VGVSVVNALSSKLKLTIRRGGKVWEQVYKHGVPQAPLSVIGET-ELTGTEVHFWPSAETF 178

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   F    L K  +  ++L+  V+     ++   E       E + + GGLK +++  
Sbjct: 179 NNI-EFHFEHLAKRLRELSFLNSGVRIRLLDERSGKE-------EVYEYEGGLKAFVEFL 230

Query: 277 LENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
            +N++ I+  +    + E  G     VE A+ W +     I  Y N I   +GGTH +G 
Sbjct: 231 NQNKNPINKVMHFTAQREDDGV---GVEVALQWNDGFQENIYCYTNNIPQRDGGTHLAGF 287

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTRG+  Y E      K  ++   DD     V I+SV + +P+F+ QTK KLVS + 
Sbjct: 288 RAALTRGLNSYIEREGIGKKEKVATTGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEV 347

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451
           +  VE  +   F+ YL++NP EA  ++  +IE ++ R   RK R    RK A+    LPG
Sbjct: 348 KTAVEQEMGSAFNDYLLENPQEAKSVVGKMIEAAKAREAARKAREMTRRKGALDIAGLPG 407

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ 
Sbjct: 408 KLADCQEKDPALSELYLVEGDSAGGSAKQGRSRKTQAILPLKGKILNVEKARFDKMLSSA 467

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALGC     ++  + LRY  +IIMTDADVDG+HI +LLLTFF+++M +LIE+ 
Sbjct: 468 EVGTLITALGCGIGAQEFNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMRELIERG 527

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           H+F+  PPL++I++G    Y  D++  Q+ L
Sbjct: 528 HIFIAQPPLYKISKGKHEEYLKDDDALQQFL 558



 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G ++   ++     + L+      K    I R+KGLGEM   QL ET MD   R +L
Sbjct: 711 VAKGERTREVNN---FAEALDWIMNESKKGYNIQRYKGLGEMNPEQLWETTMDPETRRML 767

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V +   +            LMG + + R  FI+  A  + ++ 
Sbjct: 768 QVTVEDAI----AADQIFTTLMGDQVEPRRDFIETNALAVANLD 807


>gi|88860613|ref|ZP_01135250.1| DNA gyrase, subunit B (type II topoisomerase) [Pseudoalteromonas
           tunicata D2]
 gi|88817208|gb|EAR27026.1| DNA gyrase, subunit B (type II topoisomerase) [Pseudoalteromonas
           tunicata D2]
          Length = 805

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 220/578 (38%), Positives = 348/578 (60%), Gaps = 17/578 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+ YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I +
Sbjct: 2   SEIYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDESLAGHCDDIAI 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            +  +G ++V DNGRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  MIHTDGSVSVRDNGRGIPTSIHEE-EGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L +T+ R+  +  Q ++RG+P +PL    +  +  GT I F P  + F D 
Sbjct: 121 SVVNALSEKLRLTIRREGKVHEQFYTRGVPDAPLAVIGE-SDTTGTEIRFWPSGETFTDL 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             +    L K  +  ++L+  V      +++          + F + GG+K +++   +N
Sbjct: 180 N-YHYDILAKRLRELSFLNSGVSIRLMDERD-------ERNDHFKYEGGIKAFVEYLNKN 231

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ +   +F   + ++     +VE A+ W +     +  + N I   +GGTH +G R AL
Sbjct: 232 KTPVHQSVFHFNSTRE-EDGISVEVAMQWNDGFQEGVYCFTNNIPQRDGGTHLAGFRGAL 290

Query: 339 TRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K   S   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNNYMDKEGFNKKEKTSASGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLAD 455
           E A+ +    +L+++P EA  ++  +++ +  R   R+      RK A+    LPGKLAD
Sbjct: 351 EQAMTEKLTEFLLEHPTEAKIVVTKIVDAARAREAARRARDMTRRKGAMDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC   R +Y+ E LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ ++++
Sbjct: 471 LITALGCGIGRDEYKPEKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGYIYI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612
             PPL+++ +G +  Y  D+    + L           
Sbjct: 531 AQPPLYKVKKGKQERYIKDDPALTEYLTTLALEDSSLY 568



 Score =  133 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 29/159 (18%)

Query: 538 VIIMTDADVDGAHIASLLLTFFYQE-----------MYDLIEQKHLFLISPPLFRITQGT 586
           VI +    +D  HI  L L F               M +LIE+   ++         +G 
Sbjct: 664 VITIRQHGIDKDHI--LNLDFITSHDYRKIKKTGELMANLIEEG-GYI--------QRGE 712

Query: 587 KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646
           K++   +       LE      K  + I R+KGLGEM  SQL ET MD + R +L+V+I 
Sbjct: 713 KTLEVTN---FVDALEWLITESKRGLYIQRYKGLGEMNPSQLWETTMDPSARRMLQVKIE 769

Query: 647 KDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             +            LMG + + R +FI+  A  + ++ 
Sbjct: 770 DAI----AADQLFATLMGDQVEPRREFIERNALRVVNLD 804


>gi|254246825|ref|ZP_04940146.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Burkholderia cenocepacia PC184]
 gi|124871601|gb|EAY63317.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Burkholderia cenocepacia PC184]
          Length = 833

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 237/607 (39%), Positives = 345/607 (56%), Gaps = 33/607 (5%)

Query: 23  LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEV 81
             ++ +I  S    +Q  + +Y ASSI+ILEGLE VR RPGMYIG T D   LHHL  EV
Sbjct: 2   APQNRKISMSEQHNSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEV 61

Query: 82  IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE--NHPKFP-NKSTLEIILTTLH 138
           +DN++DE +AGY N I V++  +  ++V DNGRGIP +   + K    +S  EI++T LH
Sbjct: 62  LDNSIDEALAGYCNDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELH 121

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP--------- 189
           AGGKFD ++Y++SGGLHGVG+S VNALS  L +TV R       +F RG+          
Sbjct: 122 AGGKFDQNSYKVSGGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLEVVD 181

Query: 190 ---LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
              +SP+       N RGT + F  DP IFG    +    L K  +  ++L+  V+   +
Sbjct: 182 GVEVSPMLVTGDTEN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLT 239

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   E         F F GG+K +++   + ++ +   +F    EK G     VE A+
Sbjct: 240 DLRSGKEDD-------FAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGV---GVEVAM 289

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W +     +  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+ 
Sbjct: 290 QWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMR 349

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                +LSV + EP+F+ QTK KLVS + +  VE  +    + +L++ PI+A  +   ++
Sbjct: 350 EGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIV 409

Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           E +  R   RK RE+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R
Sbjct: 410 EAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGR 469

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIM 541
           +R  QA+LPLRGK+LNV  A  +K+ +++QI+ LV ALGC    +    + LRY ++IIM
Sbjct: 470 DRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIM 529

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           TDADVDGAHI +LLLTF Y++M D+IE+ ++++  PPL++I  G    Y  D+      +
Sbjct: 530 TDADVDGAHIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHM 589

Query: 602 EEFKKHG 608
                 G
Sbjct: 590 LRLALQG 596



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             +  ++      +  +   R+KGLGEM   QL ET MD   R LLRV+I   +      
Sbjct: 747 DFKSAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMDPAVRRLLRVQIEDAI----AA 802

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
                 LMG   + R  FI+  A    ++ 
Sbjct: 803 DGIFTTLMGDDVEPRRAFIESNALRAGNID 832


>gi|307296994|ref|ZP_07576810.1| DNA gyrase, B subunit [Sphingobium chlorophenolicum L-1]
 gi|306877520|gb|EFN08748.1| DNA gyrase, B subunit [Sphingobium chlorophenolicum L-1]
          Length = 835

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 221/587 (37%), Positives = 344/587 (58%), Gaps = 26/587 (4%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVI 90
           S    N   S++Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV DNA+DE +
Sbjct: 2   SEESQNNPNSNSYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEAL 61

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF----DNS 146
           AG+ + I ++L+ +G ++V DNGRGIP + H K    S  E+I+T LHAGGKF    D++
Sbjct: 62  AGHCDRILITLNPDGSVSVEDNGRGIPTDIH-KEEGVSAAEVIMTQLHAGGKFENTSDDN 120

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGT 205
            Y++SGGLHGVG+SVVNALS+ L + + R       +F+ G  ++PL+        K+GT
Sbjct: 121 AYKVSGGLHGVGVSVVNALSEYLDLNIWRDGKEHYMRFAYGDAVAPLKVIGDAPAGKKGT 180

Query: 206 RITFRPDPK-------IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
           ++TF P  +        F +   FD  +L    +  A+L+  V+   +  +   +K    
Sbjct: 181 KVTFLPSTEKVPGDGGTFKNHTEFDFEKLEHRYRELAFLNSGVRLFLADARHEEKKEVE- 239

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT-HRGTVEWAIAWCEENPEITS 317
                ++ GG+  +++    N++ +  +       +        +EW  ++      +  
Sbjct: 240 ----LFYEGGIAAFVKYLDRNKTPLMPDPIAISGSRDDVTIDVALEWNDSY---YENVLC 292

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +  R ALTR +  YA+ +    K  +S+  +D+      I+SV + 
Sbjct: 293 FTNNIPQRDGGTHLAAFRAALTRTLNNYADKSGMLKKEKVSLTGEDMREGLTAIVSVKLP 352

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           +P+F+ QTK KLVS + ++ +E+ + D    +L +NP     +++ VI+ +  R   +K 
Sbjct: 353 DPKFSSQTKDKLVSSEVRQPLESLMADKMAEWLEENPQHGKMIVQKVIDAAAAREAAKKA 412

Query: 436 REVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE+ R+   +    LPGKLADC +     +ELF+VEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 413 RELTRRKGVMDIASLPGKLADCQERDPAKSELFLVEGDSAGGSAKQGRNRHNQAILPLKG 472

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           KILNV  A  +++ +++++  L+QA+G   R  +  E LRY K++IMTDADVDGAHI +L
Sbjct: 473 KILNVERARFDRMLSSKEVGTLIQAMGTGIRDDFNLEKLRYHKIVIMTDADVDGAHIRTL 532

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           LLTFFY++M  +IE  HL++  PPL++ T+G   VY  +E   +  L
Sbjct: 533 LLTFFYRQMPQIIEAGHLYIAQPPLYKATRGRSEVYLKNEAALENYL 579



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           ++LE     G+  + I R+KGLGEM A QL ET +D + R++LRVE+ +         + 
Sbjct: 752 ELLEAILASGRKGLAIQRYKGLGEMNAEQLWETTLDPDNRSMLRVEVEQ----ADVADEI 807

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             +LMG   + R +FIQ+ A  + ++ 
Sbjct: 808 FTRLMGDVVEPRREFIQDNALNVANLD 834


>gi|92112113|gb|ABE73747.1| DNA gyrase subunit B [Azoarcus communis]
          Length = 832

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 231/601 (38%), Positives = 341/601 (56%), Gaps = 36/601 (5%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGY 93
               +A + YD SSI+ LEGLE VR RPGMYIG T D   LHH+  EV+DN++DE +AG+
Sbjct: 8   PVQPAAENAYDESSIQQLEGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNSIDEALAGH 67

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
            + I +++  +  ++V DNGRGIPV         P +S  EI++  LHAGGKF+ ++Y++
Sbjct: 68  CDDIVITIHADNSISVADNGRGIPVGVKMDDKHEPKRSAAEIVMCVLHAGGKFNQNSYKV 127

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEK 198
           SGGLHGVG+S VNALS  L + V R       +F+RGIP             SPL+   +
Sbjct: 128 SGGLHGVGVSCVNALSKWLRLVVRRDGKKHFMEFNRGIPQDRVIEVVDGIETSPLKIIGE 187

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
               RGT + +  D +IFG    +    L K  +  ++L+  VK      +         
Sbjct: 188 SSK-RGTEVHYLADEEIFGTV-EYHYDILAKRLRELSFLNNGVKIRLLDQR-------TG 238

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG------THRGTVEWAIAWCEEN 312
           ++E+F F GG+K +++     ++++   +F      +            VE A+ W +  
Sbjct: 239 KEEDFAFAGGVKGFVEYINRTKTVLHPTVFYAAGTTRIPTGAGHDAELAVEVAMQWNDSY 298

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369
             ++  Y N I   +GGTH +GLR A+TR I KY E  +   K  + I  DD+      +
Sbjct: 299 AEQVLCYTNNIPQADGGTHLTGLRAAMTRVINKYIEENEIAKKAKVDITGDDMREGLACV 358

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           LSV + +P+FA QTK KLVS +A+  VE  + +    +L++NPI+A  +   ++E +  R
Sbjct: 359 LSVKMPDPKFASQTKMKLVSSEARPAVEEVVANKLGDFLLENPIDAKTICNKIVEAARAR 418

Query: 430 LRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
              RK      RK  +  + LPGKLADC +      EL++VEGDSAGGSAKQ R+R  QA
Sbjct: 419 DAARKAREMTRRKGILDGVGLPGKLADCQEKDPALCELYLVEGDSAGGSAKQGRDRKFQA 478

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVD 547
           +LPL+GKILNV  A  +K+  +Q+I  L+ ALG    +  Y+ E LRY ++I+MTDADVD
Sbjct: 479 ILPLKGKILNVEKARFDKLLQSQEIATLITALGTSIGKDDYKPEKLRYHRIILMTDADVD 538

Query: 548 GAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607
           GAHI +LLLTFFY++M +L+E+ H+++  PPL++I  G   +Y  D+      L +    
Sbjct: 539 GAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKIKHGKTELYIKDDHELNGHLLKLALD 598

Query: 608 G 608
           G
Sbjct: 599 G 599



 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
               +       +  I   R+KGLGEM   QL ET MD   R LLRV+I+  +       
Sbjct: 747 FADAITWLLNEVERGITKQRYKGLGEMNPDQLWETTMDPAVRRLLRVQIDDAI----AAD 802

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           +    L+G   + R  FI+  A +  ++ 
Sbjct: 803 EIFTTLLGDNVEPRRAFIEGNALYAQNID 831


>gi|170731359|ref|YP_001763306.1| DNA gyrase subunit B [Burkholderia cenocepacia MC0-3]
 gi|169814601|gb|ACA89184.1| DNA gyrase, B subunit [Burkholderia cenocepacia MC0-3]
          Length = 824

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 235/594 (39%), Positives = 340/594 (57%), Gaps = 33/594 (5%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94
            +Q  + +Y ASSI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +AGY 
Sbjct: 6   NSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYC 65

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVE--NHPKFP-NKSTLEIILTTLHAGGKFDNSTYEIS 151
           N I V++  +  ++V DNGRGIP +   + K    +S  EI++T LHAGGKFD ++Y++S
Sbjct: 66  NDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQNSYKVS 125

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKV 199
           GGLHGVG+S VNALS  L +TV R       +F RG+             +SP+      
Sbjct: 126 GGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLEVVDGVEVSPMLVTGDT 185

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            N RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E      
Sbjct: 186 EN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD---- 239

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              F F GG+K +++   + ++ +   +F    EK G     VE A+ W +     +  +
Sbjct: 240 ---FAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGV---GVEVAMQWNDSYNENVLCF 293

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + E
Sbjct: 294 TNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPE 353

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F+ QTK KLVS + +  VE  +    + +L++ PI+A  +   ++E +  R   RK R
Sbjct: 354 PKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAR 413

Query: 437 EVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK
Sbjct: 414 EMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGK 473

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASL 554
           +LNV  A  +K+ +++QI+ LV ALGC    +    + LRY ++IIMTDADVDGAHI +L
Sbjct: 474 VLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTL 533

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           LLTF Y++M D+IE+ ++++  PPL++I  G    Y  D+      +      G
Sbjct: 534 LLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQG 587



 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
              +  ++      +  +   R+KGLGEM   QL ET MD   R LLRV+I   +     
Sbjct: 737 ADFKSAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMDPAVRRLLRVQIEDAI----A 792

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
                  LMG   + R  FI+  A    ++ 
Sbjct: 793 ADGIFTTLMGDDVEPRRAFIESNALRAGNID 823


>gi|134288296|ref|YP_001110459.1| DNA topoisomerase IV subunit B [Burkholderia vietnamiensis G4]
 gi|134132946|gb|ABO59656.1| DNA topoisomerase IV subunit B [Burkholderia vietnamiensis G4]
          Length = 654

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 249/664 (37%), Positives = 359/664 (54%), Gaps = 40/664 (6%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YD S   +LEGLEPVR  PGMY   T  +   H+  EV+DNA DE   G+A+ I+V +  
Sbjct: 8   YDESDFDVLEGLEPVRQVPGMY---TRTENPMHIIQEVLDNAADEAQNGHASRIDVIVHR 64

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN-STYEISGGLHGVGISVV 162
           +  +TV DNGRGIPV  HP       + +  T LHAG KF   ++Y+ SGGLHGVG++V 
Sbjct: 65  DNSVTVADNGRGIPVGLHP-TKQIPVVVLAYTKLHAGAKFRKGNSYQRSGGLHGVGVAVT 123

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIP-LSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           NALS ++ V V R+  +    F  G   +S +E          GTR+   P+PK F    
Sbjct: 124 NALSTKVEVEVKREGKVHRVHFLDGDREISDVELVGDCGPRTTGTRVRAWPNPKYFAS-P 182

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
               A+  ++ +SKA L   V   +  D+   E+        + +  G+  YL  ++ + 
Sbjct: 183 QIPLAKFEELLRSKAMLMPGVTVNYRNDETGDERS-------WCYKDGIGDYLSERIADL 235

Query: 281 SLISSEIFTGKTEKKGTHRGTVE-----WAIAWCEENPEITSYCNTILTDEGGTHESGLR 335
            L+  E+FTG+     +    VE     WAIAW  E+    SY N I T  GGTHE+GLR
Sbjct: 236 ELVG-EVFTGQGYVAESVGSIVEGDGAKWAIAWTIESGRGESYVNLIPTPLGGTHEAGLR 294

Query: 336 VALTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
             L   +K Y E      R I++ ++D+   A  ILS  +   +F GQTK KL S +  R
Sbjct: 295 AGLFEALKAYCEHHAMLPRGITLQAEDVWSHAQFILSAAVTNTQFQGQTKDKLNSREVVR 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454
            +   +RDPFDH+L+ +P  A K+ E  I ++  R R  + + V ++ +     LPGKL 
Sbjct: 355 LLSTVVRDPFDHWLIDHPEAAKKVAELAIRQATARAR--QGKVVEKRKSSGVATLPGKLT 412

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC        ELF+VEGDSAGGSAKQARNR  QA+LPLRGKILN      +++ +N ++ 
Sbjct: 413 DCESTDITRNELFLVEGDSAGGSAKQARNREYQAILPLRGKILNTFDTARDQLFSNNEVH 472

Query: 515 DLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           D+  A+G     +    D   LRY K+ ++TDADVDG+HI +LLLT F+    +L+E+ H
Sbjct: 473 DISVAIGVDPHERGSAVDLSGLRYGKIALLTDADVDGSHIQTLLLTLFFIHFPELVERGH 532

Query: 572 LFLISPPLFRITQGTK-------SVYAHDEEHKQKILEEFKKHG--KGKIEISRFKGLGE 622
           +++  PPLFRI  G +        +Y  D+  +  +L +    G     + ISRFKGLGE
Sbjct: 533 VYIAQPPLFRIDVGAQGKGRPARKIYCLDDAERMSVLRQLADEGVRDSALSISRFKGLGE 592

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQERASFI 681
           M   QL+ET M A+ R +L+V +  D   L DT  + + LM   +A  R  +++E+    
Sbjct: 593 MNPEQLRETTMHADTRRMLQVGVPDDG--LADTLKAFHLLMAKGEAGSRRAWLEEKGDLA 650

Query: 682 DDVG 685
           + + 
Sbjct: 651 E-LD 653


>gi|310817257|ref|YP_003965221.1| DNA gyrase, B subunit [Ketogulonicigenium vulgare Y25]
 gi|308755992|gb|ADO43921.1| DNA gyrase, B subunit [Ketogulonicigenium vulgare Y25]
          Length = 816

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 220/589 (37%), Positives = 329/589 (55%), Gaps = 25/589 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
              +    +Y A SI++L GL+ VR RPGMYIG TD+   LHH+  EV+DN +DE +AG+
Sbjct: 2   SEPKPQPGDYGADSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMIYEVVDNGIDEALAGH 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN-----STY 148
           A  + V +  +  ++V DNGRGIPV  H +    S  E+I+T LHAGGKF+N     + Y
Sbjct: 62  ATSVYVKIHADSSVSVRDNGRGIPVGIHAE-EGVSAAEVIMTQLHAGGKFNNTDESGNAY 120

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS+ L + + R    +  +F  G  +  ++       +RGT + 
Sbjct: 121 KVSGGLHGVGVSVVNALSEWLELRIWRDGHEYHARFEHGNVVQHVKDLGPSDGERGTEVR 180

Query: 209 F-----RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           F         +       +    L +  +  A+L+  V+     ++        P K E 
Sbjct: 181 FLAAVRVAANEGTFSNLEYSYDVLERRLRELAFLNSGVRIVLEDER-----PAQPLKTEL 235

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTI 322
           Y+ GG++ +++    +++ I  E      E+ G     VE A+ W +   E    + N I
Sbjct: 236 YYDGGVREFVKYLDRSKTAIMPEPIFMVGERAGI---GVEVAMWWNDSYHENVLPFTNNI 292

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR I KYA+ +    K  I +  DD       +LSV + +P+F+
Sbjct: 293 PQRDGGTHIAGFRAALTRTITKYAQDSGIAKKEKIDLTGDDAREGMTCVLSVKVPDPKFS 352

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VN 439
            QTK KLVS + +  VEN + +    +  +NP  A  ++  +IE ++ R   RK RE   
Sbjct: 353 SQTKDKLVSSEVRPAVENLVGEKLAEWFEENPQMARMIVGKIIEAAQAREAARKARELTR 412

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK+A+    + GKL DC++     TELFIVEGDSAGGSA+  R+R  QA+LPLRGKILNV
Sbjct: 413 RKSALDVNFMAGKLKDCAEKDPSKTELFIVEGDSAGGSAQMGRDRLTQAILPLRGKILNV 472

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTF 558
             A  +++ ++ +I +LV ALG            LRY K++IMTDADVDGAHI +LLLTF
Sbjct: 473 ERARFDRMLSSAEIGNLVMALGTGIGRDEFNLAKLRYHKIVIMTDADVDGAHIRTLLLTF 532

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607
           F+++M  LIE  H+++  PPL+++++G   VY  D+    + L +    
Sbjct: 533 FFRQMPQLIEAGHVYIAQPPLYKVSRGKSEVYLKDQAAYDEYLIQQGAD 581



 Score =  133 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L+     G+  +++ R+KGLGEM   QL ET +D + RTLL+V ++     + +  D 
Sbjct: 733 DLLKAILSEGERGLQLQRYKGLGEMNPEQLWETTLDPDARTLLQVRVDD----MTEADDI 788

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R +FIQ  A  + ++ 
Sbjct: 789 FTKLMGDVVEPRREFIQNNALSVANLD 815


>gi|152994047|ref|YP_001338882.1| DNA gyrase subunit B [Marinomonas sp. MWYL1]
 gi|150834971|gb|ABR68947.1| DNA gyrase, B subunit [Marinomonas sp. MWYL1]
          Length = 807

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 229/623 (36%), Positives = 356/623 (57%), Gaps = 28/623 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
           + + YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I 
Sbjct: 2   SENKYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDTIT 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V +  +  ++V DNGRGIPV+ H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG
Sbjct: 62  VLIHPDESISVSDNGRGIPVDIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+ L +T+ +   ++ Q ++ G+P +PL       +  GT + F+P P  F +
Sbjct: 121 VSVVNALSEALTLTIRKNGKVYEQFYAHGVPQAPLAIVGD-SDGAGTTVHFKPSPATFSN 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++         +++ F + GGL+++++    
Sbjct: 180 IL-FVYDILAKRLRELSFLNSGVAIRLKDER-------TGKEDFFNYTGGLRSFVEHLNT 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ I+         +       VE A+ W E     I  Y N I   +GGTH +G R A
Sbjct: 232 NKTPINDIFHFMCQREDLEDGIAVEVALQWNEGFQENIYCYTNNIPQRDGGTHLAGFRGA 291

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  + E      K+ ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 292 LTRTLNTFIEKEGLAKKQKVATTGDDCREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKTA 351

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  +   F  +L++ P EA  ++  +I+ +  R   R+      RK A+    LPGKLA
Sbjct: 352 VEQEMTKRFSEFLLEKPNEAKIIVNKMIDAARAREAARRARDMTRRKGALDIAGLPGKLA 411

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +E+++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+  + ++ 
Sbjct: 412 DCQEKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLASVEVG 471

Query: 515 DLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            L+ ALGC         + LRY  ++IMTDADVDG+HI +LLLTFF+++M ++IE+ H+F
Sbjct: 472 TLITALGCGIGRDEFNADKLRYHSIVIMTDADVDGSHIRTLLLTFFFRQMPEIIERGHIF 531

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG------KGKIEISRFKGLGEMLASQ 627
           +  PPLF+I +G +  Y  DE    + L E    G      +    I      GE LA  
Sbjct: 532 IAQPPLFKIKRGKQEQYIKDEAALDQHLIEVALDGAHMHVNEDAPGIQ-----GEHLAKL 586

Query: 628 LKETA-MDANKRTLLRVEINKDL 649
           +++   ++A+   L RV     +
Sbjct: 587 MRDYIHIEADVDRLARVYPKDVM 609



 Score =  140 bits (352), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G +          +  L    K     + I R+KGLGEM   QL ET MD + R +L
Sbjct: 710 IQRGERRETVKTISDMKSWL---MKEASRGMTIQRYKGLGEMNPEQLWETTMDPDARRML 766

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           RV I+  +            LMG + + R  FIQ+ A  + ++ 
Sbjct: 767 RVTIDDAV----AADQMFTTLMGDEVEPRRNFIQDNALNVANLD 806


>gi|171056695|ref|YP_001789044.1| DNA gyrase subunit B [Leptothrix cholodnii SP-6]
 gi|170774140|gb|ACB32279.1| DNA gyrase, B subunit [Leptothrix cholodnii SP-6]
          Length = 864

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 237/639 (37%), Positives = 352/639 (55%), Gaps = 45/639 (7%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKS----GEIPDSPAFANQSASDNYDASSIRILEGLE 56
           MTD       +LP +  GS++    +     ++   P      AS  Y + SI+ILEGLE
Sbjct: 1   MTDPK-----SLPQEPNGSADADGVTRRDLPDVEGVPVSTGAEASAAYGSDSIQILEGLE 55

Query: 57  PVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRG 115
            VR RPGMYIG T D   LHHL  EV+DN++DE +AG+ + I V++  +  ++V+DNGRG
Sbjct: 56  AVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIIVTIHTDNSISVIDNGRG 115

Query: 116 IPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVT 172
           IP          P +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VN LS  L +T
Sbjct: 116 IPTGVKMDDKHEPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNGLSTWLRLT 175

Query: 173 VARQNTIFSQKFSRGIP------------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           V R       +F +GIP            +SP++   +  +KRGT + F PD  IF +  
Sbjct: 176 VRRDGRAHFMEFRQGIPQDRVLERRDGFEVSPMKVIGET-DKRGTEVHFLPDHTIFSNI- 233

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L K  +  ++L+  VK     ++   E         F + GG+K +++   + +
Sbjct: 234 DFHYEILSKRLRELSFLNNGVKIRLVDERNNKEDN-------FAYAGGVKGFVEFVNKGK 286

Query: 281 SLISSEIFTGKTEK--KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            ++   IF  + +K         VE A+ W E     +  + N I   +GGTH +GLR A
Sbjct: 287 KVLHGNIFHARGDKMSDNQTNVGVEVAMQWNESYNENVLCFTNNIPQRDGGTHLTGLRAA 346

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           +TR I KY +      K  + I  DD+      ++SV + EP+F+ QTK KLVS + +  
Sbjct: 347 MTRVINKYIDDNDIAKKAKVEITGDDMREGLACVVSVKVPEPKFSSQTKDKLVSSEVRAP 406

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLA 454
           VE+ +      +L++NP +A  +   +++ +  R   RK RE+ R+   +  + LPGKLA
Sbjct: 407 VEDIVSRLLTDWLLENPTDAKTICSKIVDAARARDAARKAREMTRRKGVLDGMGLPGKLA 466

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +      E+++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  EK+  + +I+
Sbjct: 467 DCQEKDPSLCEIYLVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARYEKLLTSNEIL 526

Query: 515 DLVQALGCRTR-----SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
            L+ ALG           +  + LRY ++IIMTDADVDGAHI +LLLTFF+++M DL+E+
Sbjct: 527 TLITALGTGIGKGMGGDDFNPDKLRYHRIIIMTDADVDGAHIRTLLLTFFFRQMPDLVER 586

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
            ++++  PPL+++  G    Y  D       L +    G
Sbjct: 587 GNIYIAQPPLYKVKHGKHEQYLKDGSELDAYLLKVAIDG 625



 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             +  +    +  +  +   R+KGLGEM   QL ET MD   R LLRV+I   +    + 
Sbjct: 778 DFRVAMAWLMQQAESSVGRQRYKGLGEMNPGQLWETTMDPTVRRLLRVQIEDAI----EA 833

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
                 LMG + + R  FI+  A    ++ 
Sbjct: 834 DKVFTMLMGDEVEPRRDFIESNALRAANID 863


>gi|144898158|emb|CAM75022.1| DNA topoisomerase II [Magnetospirillum gryphiswaldense MSR-1]
          Length = 704

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 234/577 (40%), Positives = 340/577 (58%), Gaps = 18/577 (3%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVI 90
           +        ++ Y A SI++L GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +
Sbjct: 2   TEPVNPNPTAEEYGADSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEAL 61

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AGYANL+EV L+ +G  TV DNGRGIP + H K    S  E+I+T LHAGGKFD ++Y++
Sbjct: 62  AGYANLVEVVLNADGSCTVRDNGRGIPTDIH-KEEGVSAAEVIMTQLHAGGKFDQNSYKV 120

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS+ L + + R     + +F  G  ++PL+      +K GT +TF 
Sbjct: 121 SGGLHGVGVSVVNALSEFLDLRIWRSGHEHTMRFHMGDAVAPLKLVGP-SDKSGTEVTFL 179

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P   IF     FD A L    +  A+L+  V+      +   E          ++ GG++
Sbjct: 180 PSTTIFTKT-EFDFATLEHRLRELAFLNSGVRLWLRDQRHPEEVVTE-----LHYEGGIE 233

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            ++     +++ + +       EK G    TVE A+ WC+        + N I   +GGT
Sbjct: 234 AFVHYLDRSKTALHAPPIAVAGEKDGI---TVEVAMEWCDSYHETQLCFTNNIPQRDGGT 290

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R ALTR I  YA  +    K  +++  DD+      +LSV + +P+F+ QTK KL
Sbjct: 291 HLAGFRAALTRTINTYANESGIAKKEKVALNGDDMREGLTCVLSVKVPDPKFSSQTKDKL 350

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--R 445
           VS + +  VEN + +    +  ++P EA K++  V+E +  R   R+ RE+ R       
Sbjct: 351 VSSEVRPVVENVVGEKLAEWFEEHPQEARKVVTKVVEAAAAREAAREARELTRHIVACWT 410

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
               PGKLADC++     +ELFIVEGDSAGGSAKQ RNR+NQA+LPL+GKILNV  A  +
Sbjct: 411 SSPCPGKLADCTERDPALSELFIVEGDSAGGSAKQGRNRANQAILPLKGKILNVERARFD 470

Query: 506 KIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           K+ ++ +I  L+ ALG     +    +  RY K+IIMTDADVDG+HI +LLLTFF+++M 
Sbjct: 471 KMLSSAEIGTLIAALGTGIGREDFNADKTRYHKIIIMTDADVDGSHIRTLLLTFFFRQMP 530

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++IE+ +L++  PPL+R  +G   VY  DE   ++ L
Sbjct: 531 EIIERGYLYIAQPPLYRAKRGQSEVYLKDERAMEEYL 567


>gi|326316174|ref|YP_004233846.1| DNA topoisomerase (ATP-hydrolyzing) [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323373010|gb|ADX45279.1| DNA topoisomerase (ATP-hydrolyzing) [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 660

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 238/672 (35%), Positives = 344/672 (51%), Gaps = 38/672 (5%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
            A  +  +  +Y   SIR+L+GLEPV+ RPGMY   T      H+  EV+DNA DE +AG
Sbjct: 2   AAKPSSVSPSDYSEGSIRVLKGLEPVKQRPGMY---TRTDNPLHIIQEVLDNAADEALAG 58

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA---GGKFDNSTYE 149
           +   I+V+L  +G + + D+GRGIP   HP+      +E++ T LHA     K     Y 
Sbjct: 59  HGKRIKVTLFADGSVGIEDDGRGIPFGLHPE-EKAPVIELVFTRLHAGGKFDKGKGGAYS 117

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR--GTRI 207
            SGGLHGVG+SV NAL+  L  T  R   I    F  G    PL  +     +R  GT +
Sbjct: 118 FSGGLHGVGVSVTNALALRLEATTHRDGQIARLVFEGGDVTEPLTARPLAAGERRQGTTV 177

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
              PD K F          L+ + +SKA L   V      +K         E + + + G
Sbjct: 178 RVWPDGKYFES-TALPMNELVHLLRSKAVLMPGVTVSLVNEK-------TKETQTWQYKG 229

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW----CEENPEITSYCNTIL 323
           GL+ YL   L    +I      G  ++        E A        E  P   SY N I 
Sbjct: 230 GLRDYLGQSLSADPVIPLFEGEGYADRHNESFAEGEGAAWCVGFTDEGAPVRESYVNLIP 289

Query: 324 TDEGGTHESGLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
           T  GGTH++GLR  L + +K + E  +   + + ++ +D+   A  +LS  + +P+F GQ
Sbjct: 290 TSAGGTHDAGLRDGLFQAVKSFIELHSLLPKGVKLLPEDVFARASYVLSAKVLDPQFQGQ 349

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
            K KL S DA R V + +R   + +L Q+     KL E  I+ ++ R +  ++ E  + +
Sbjct: 350 VKEKLNSRDAVRLVSSYVRPALELWLHQHVDYGKKLAELAIKAAQTRQKAGQKVEKKKGS 409

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
            +  L  PGKL DC        E+F+VEGDSAGGSAK  R++  QAVLPLRGK+LN    
Sbjct: 410 GVAVL--PGKLTDCESRDLSHNEVFLVEGDSAGGSAKMGRDKECQAVLPLRGKVLNTWEV 467

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFF 559
             +++  N +I D+  ALG          D   LRY KV I++DADVDG+HI  LLLT F
Sbjct: 468 DRDRLFANTEIHDISVALGVDPHGPNDTPDLSGLRYGKVCILSDADVDGSHIQVLLLTLF 527

Query: 560 YQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGK 611
           ++    LIE  H+++  PPL+R+    +G K    VYA D+   + IL++  K G  + K
Sbjct: 528 FRHFPKLIETGHIYVARPPLYRVDVPARGKKPASKVYALDDGELEAILDKCAKDGVAREK 587

Query: 612 IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADER 670
            +ISRFKGLGEM A QL ET ++ + R LL V++        +T+  I KLMG  +A  R
Sbjct: 588 CQISRFKGLGEMNAEQLWETTLNPDTRRLLPVQLGDLG--FAETEGLITKLMGKGEAAAR 645

Query: 671 FKFIQERASFID 682
            + ++     ++
Sbjct: 646 RELMELHGDAVE 657


>gi|167560988|ref|ZP_02353904.1| DNA gyrase subunit B [Burkholderia oklahomensis EO147]
 gi|167568252|ref|ZP_02361126.1| DNA gyrase subunit B [Burkholderia oklahomensis C6786]
          Length = 823

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 236/593 (39%), Positives = 340/593 (57%), Gaps = 33/593 (5%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95
           N    ++Y ASSI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +AGY N
Sbjct: 6   NSQPENSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYCN 65

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
            I V++  +  ++V DNGRGIP +        P +S  EI++T LHAGGKFD ++Y++SG
Sbjct: 66  DIHVTIHADNSISVTDNGRGIPTDVKLNDKHEPKRSAAEIVMTELHAGGKFDQNSYKVSG 125

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKVR 200
           GLHGVG+S VNALS  L +TV R       +F RGI             +SP++      
Sbjct: 126 GLHGVGVSCVNALSSWLRLTVRRDGKKHFMEFHRGIAQNRAIETRDGIDVSPMQVVGDTE 185

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
           N RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E       
Sbjct: 186 N-RGTEVHFMADPTIFGTV-EYHYDILAKRIRELSFLNNGVRIRLTDLRSGKEDD----- 238

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
             F F GG+K +++   + ++++   IF    EK G     VE A+ W +     +  + 
Sbjct: 239 --FAFVGGVKGFVEYINKTKTVLHPTIFHINGEKDGV---GVEVAMQWNDSYNENVLCFT 293

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH +GLR A+TR I KY    +   K  I    DD+      +LSV + EP
Sbjct: 294 NNIPQRDGGTHLTGLRAAMTRVINKYIIDNEIAKKAKIETSGDDMREGLSCVLSVKVPEP 353

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F+ QTK KLVS + +  VE  +    + +L++ P +A  +   ++E +  R   RK RE
Sbjct: 354 KFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPGDAKIICGKIVEAARARDAARKARE 413

Query: 438 VNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
           + R+   +  + LPGKLADC +     +E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+
Sbjct: 414 MTRRKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKV 473

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLL 555
           LNV  A  +K+ +++QI+ LV ALGC         + LRY ++IIMTDADVDGAHI +LL
Sbjct: 474 LNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLL 533

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           LTFFY++M ++IE+ ++++  PPL+++  G    Y  D+      +      G
Sbjct: 534 LTFFYRQMPEMIERGYVYIAQPPLYKVKAGRDERYLKDDTELDAHMLRLALQG 586



 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 4/93 (4%)

Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652
           +    +  ++      +  +   R+KGLGEM   QL ET MD   R LLRV+I   +   
Sbjct: 734 NVSDFKNAMKWLMTDAERNMSKQRYKGLGEMNPEQLWETTMDPAVRRLLRVQIEDAI--- 790

Query: 653 KDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
                    LMG + + R  FI+  A    ++ 
Sbjct: 791 -AADGIFTTLMGDEVEPRRAFIENNALRAGNID 822


>gi|256830858|ref|YP_003159586.1| DNA gyrase, B subunit [Desulfomicrobium baculatum DSM 4028]
 gi|256580034|gb|ACU91170.1| DNA gyrase, B subunit [Desulfomicrobium baculatum DSM 4028]
          Length = 803

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 230/569 (40%), Positives = 337/569 (59%), Gaps = 20/569 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
              +  Y A +I +LEGL  VRMRP MYIG T+   LHHL  EVIDN++DE +AGY + I
Sbjct: 2   TQKTSTYTADNITVLEGLSAVRMRPAMYIGSTNTNGLHHLVYEVIDNSIDEAMAGYCDHI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V +  +  +++VDNGRGIPV+ HPK   K  LE+++T LHAGGKFDN +Y++SGGLHGV
Sbjct: 62  KVVVHMDNSVSIVDNGRGIPVDMHPK-EKKPALEVVMTVLHAGGKFDNDSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+ L VTV+R      Q++ RG+P +PL    +  +K GT + FRPD  IF 
Sbjct: 121 GVSVVNALSEYLEVTVSRGGHRHYQRYCRGVPQAPLAVIGET-DKTGTLVRFRPDEDIFE 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  AYL+  +K  +  +K          ++ F + GG+ ++++ K 
Sbjct: 180 E-LDFQYDVLAKRFEELAYLNPGIKIEFFDEKSQN-------RDVFKYEGGIISFVKNKN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           ++  +      TG+ E       ++++A+ +       + ++ N I T EGGTH  G + 
Sbjct: 232 QDNGIHKVVGGTGEME-----GVSIDFALQYTAGYKENVFTFANNIRTKEGGTHLQGFKT 286

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  Y + +    K    +  DD+      I+SV I  P+F GQTKTKL + +   
Sbjct: 287 ALTRAINTYIQNSDVPKKLKQKVSGDDVREGLTAIISVKIPNPQFEGQTKTKLGNSEVAG 346

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            V   + +  + +  +NP +   ++E VI+ +  R   R+ ++ V RK A+    LPGKL
Sbjct: 347 YVATMVYEALNQFFGENPKDVRLIIEKVIDAARARDAARRAKDLVRRKGALSDNALPGKL 406

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC        E+FIVEGDSAGGSAKQ RN   QA+LPLRGKILNV     +K+  N++I
Sbjct: 407 ADCQSKDPAECEVFIVEGDSAGGSAKQGRNPKFQAILPLRGKILNVEKTRFDKMLQNKEI 466

Query: 514 MDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ A+G        +   LRY K++IMTDADVDGAHI +L+LTFF++   +LI+Q +L
Sbjct: 467 KALITAMGAGIGQDDVDLARLRYHKIVIMTDADVDGAHIRTLILTFFFRHYEELIKQGYL 526

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++  PPL+R+ +G+   Y  DE+   + L
Sbjct: 527 YIAQPPLYRVHKGSFERYIKDEDEMSQFL 555



 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 9/97 (9%)

Query: 594 EEHKQK-----ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648
           +   +      +L +     +  I + R+KGLGEM   QL  T MD   RT L+V I+  
Sbjct: 710 DVELEATGPFDLLRQVLDLAQKGINVQRYKGLGEMNPEQLWSTTMDPEARTFLQVTIDDA 769

Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +    +  +   KLMG K + R +FI+  A  + D+ 
Sbjct: 770 V----EADELFTKLMGDKVEPRREFIERNALLVSDLD 802


>gi|303257797|ref|ZP_07343807.1| DNA topoisomerase IV, B subunit [Burkholderiales bacterium 1_1_47]
 gi|330998784|ref|ZP_08322512.1| DNA gyrase, B subunit protein [Parasutterella excrementihominis YIT
           11859]
 gi|302859400|gb|EFL82481.1| DNA topoisomerase IV, B subunit [Burkholderiales bacterium 1_1_47]
 gi|329576281|gb|EGG57797.1| DNA gyrase, B subunit protein [Parasutterella excrementihominis YIT
           11859]
          Length = 659

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 247/671 (36%), Positives = 364/671 (54%), Gaps = 38/671 (5%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           +    +  ++Y   SIRIL+GL+PV+ RPGMY   T      H+  EVIDNA DEV+A +
Sbjct: 2   SLEQDNKVNDYSEKSIRILKGLQPVKQRPGMY---TLTDCPLHIIQEVIDNATDEVLANF 58

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEI 150
           AN I ++   +G ++V DNGRGIPV  HP+      +EI+ T LHAGGKFD      Y  
Sbjct: 59  ANRIILTEHADGSISVEDNGRGIPVGIHPE-EKVPVVEIVFTRLHAGGKFDKGAGGAYSF 117

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--LEKKEKVRNKRGTRIT 208
           SGGLHGVG+SV NALS  L VTV R     S  F  G    P    K  + +   GTR+ 
Sbjct: 118 SGGLHGVGVSVTNALSSRLEVTVWRDGLESSITFEDGFVTVPLNSVKTPRPKKATGTRVR 177

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
             PD K F         +L+++ +SKA L    +  +  +K+  E       + + + GG
Sbjct: 178 CWPDGKYFDT-LTIPKNQLIRLLRSKAVLLPGCEVVYRNEKDNIE-------QVWKYEGG 229

Query: 269 LKTYLQTKLENRSLISS---EIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILT 324
           LK YL  +L+   L+     + F G  +   +      W + W +E   E  SY N I T
Sbjct: 230 LKEYLTEQLDRPPLVQPFEAQGFAGADDDTFSQGEGAGWVVCWTDEGQLERESYVNLIPT 289

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQT 383
             GGTHE+GLR  + + ++ + E      + I +I DD+   A  +L+  + +P+F GQT
Sbjct: 290 PLGGTHEAGLRDGVFQAMRSFMETHGLGAKGIKMIVDDVFARASFVLNAKVLDPQFQGQT 349

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443
           K KL+S DA + V + +R   + +L  +  E  KL E  I++++ R      +++ ++  
Sbjct: 350 KEKLISRDALKLVSSFVRPQMEFWLNSHVEEGRKLAEMFIKQAQARQ--HSAQKIEKRKG 407

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
                LPGKL DC+       ELF+VEGDSAGGSAK+ R++  QA+LPLRGK+LN     
Sbjct: 408 SSVAVLPGKLTDCTSGDISRNELFLVEGDSAGGSAKKGRDKEYQAILPLRGKVLNTWEVD 467

Query: 504 SEKIRNNQQIMDLVQALGCRTR---SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
              +  N++I D+  ++G        +    +LRY K+ IM DADVDG+HI  LLLT FY
Sbjct: 468 QNLLFGNKEIHDISVSIGVDPHKIGEKPDISNLRYGKICIMADADVDGSHIEVLLLTLFY 527

Query: 561 QEMYDLIEQKHLFLISPPLFRIT---QGTKS---VYAHDEEHKQKILEEFKKHG--KGKI 612
           +    L+E  H+++  PPLF+++   +G K    +Y  +EE  +K +E+ KK      +I
Sbjct: 528 KHFSYLMETGHIYISMPPLFKVSVPNKGKKKERRIYCLNEEELKKTVEKLKKEKFTDAQI 587

Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMG-TKADERF 671
            ISRFKGLGEM   +LKET++D   R LL V++    + L  T  ++  LMG  +AD R 
Sbjct: 588 VISRFKGLGEMDWEELKETSLDPETRRLLPVKVGLPGDDL--TGKAMQILMGNKEADARK 645

Query: 672 KFIQERASFID 682
           ++I+      +
Sbjct: 646 QWIERHGDQFE 656


>gi|225165618|ref|ZP_03727428.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutaceae bacterium TAV2]
 gi|224800132|gb|EEG18551.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutaceae bacterium TAV2]
          Length = 895

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 225/622 (36%), Positives = 340/622 (54%), Gaps = 24/622 (3%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           M+D +        P S   +     +    D+P  ANQ+   +YDAS +  L+GLE VR 
Sbjct: 1   MSDQTDP---KNAPTSTSDASAGIIAPTALDAPFVANQAIEGDYDASKLSQLKGLEAVRK 57

Query: 61  RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           +PGMYIGGTDE+ALHH  SEV+DN++DE +AG+ + IEV++  +G +++ DNGRGIPV+ 
Sbjct: 58  KPGMYIGGTDERALHHCVSEVLDNSVDEHLAGHCSRIEVNIHVDGSISIRDNGRGIPVDI 117

Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
           + +      +E++LTTLH+GGK+    Y+ SGG HGVG   VNA+S+   V V+R   + 
Sbjct: 118 NQE-SGLPGVELVLTTLHSGGKYGQGGYKFSGGTHGVGAKCVNAVSEWFEVEVSRNGQVH 176

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
             KF RG  +  LE   K R   GT ITF+PDP+IF +   F AAR+ +  +  A+L+  
Sbjct: 177 HMKFERGKTVKKLEVIGKARG-TGTYITFKPDPEIFKETTVFQAARISQRLRELAFLNSG 235

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-----KK 295
           ++  ++ ++        P+ E +Y+  G++ ++      ++ +         E       
Sbjct: 236 LEIVFTDER-----PATPKPETYYYKNGVEEFVTQLNTGKNALHPRPIRITREVRSQIDD 290

Query: 296 GTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
                 VE  + + +   +    Y NTI   +GGTH SG R ALTR I +YA+       
Sbjct: 291 KPVEIHVEVVLQYNDTYNDQVLCYTNTIHNPDGGTHLSGFRSALTRAINQYAKANNLLKD 350

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
           +   I  DD+      ++S+   +P+F  QTK KL+S + +  V +A  +    Y   NP
Sbjct: 351 KDPQITGDDVREGLAAVISIKHSDPKFESQTKVKLLSPEVESVVGSASYEGLMMYFETNP 410

Query: 413 IEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
               ++++  +  +  R   RK RE  RK A     LPGKLADCS+      E++IVEGD
Sbjct: 411 PVIKRIIDKCLNAARAREAARKARETVRKGAFSGGGLPGKLADCSERDPSLCEIYIVEGD 470

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS------ 526
           SAGGSAKQ R+R  QA+LPLRGK+LNV  A  + +  N +I  ++ A G           
Sbjct: 471 SAGGSAKQGRDRRYQAILPLRGKVLNVEKARIDHVLGNAEIRTMITAFGTGIGEGDDSVG 530

Query: 527 QYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT 586
            +     RY K+IIMTDADVDG+HI +LLLTF Y++M  L E  ++++  PPL++I +  
Sbjct: 531 GFNIAKTRYHKIIIMTDADVDGSHIRTLLLTFLYRQMRGLFEAGYVYIAQPPLYKIKRKK 590

Query: 587 KSVYAHDEEHKQKILEEFKKHG 608
           +  Y  +++   +IL E     
Sbjct: 591 REQYVDNDDQMNRILLELGSED 612



 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 4/88 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            I+ + + +G+  + I R+KGLGEM   QL ET MD  KR LL+V +             
Sbjct: 812 DIVAQIRANGRKGLSIQRYKGLGEMNPKQLFETTMDPAKRRLLKVNV----ADAAKADAL 867

Query: 659 INKLMGTKADERFKFIQERASFIDDVGT 686
              LMG +   R +FI++ A  +  +  
Sbjct: 868 FTLLMGDEVPPRRQFIEDNALNVQFLDA 895


>gi|238025687|ref|YP_002909918.1| DNA gyrase subunit B [Burkholderia glumae BGR1]
 gi|237874881|gb|ACR27214.1| DNA gyrase, B subunit [Burkholderia glumae BGR1]
          Length = 825

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 238/598 (39%), Positives = 341/598 (57%), Gaps = 33/598 (5%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVI 90
           +    +Q  + +Y ASSI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +
Sbjct: 2   TEQHNSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL 61

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNST 147
           AGY N I V++  +  +++ DNGRGIP +        P +S  EI++T LHAGGKFD ++
Sbjct: 62  AGYCNDIHVTIHADNSISITDNGRGIPTDVKLDDKHEPKRSAAEIVMTELHAGGKFDQNS 121

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEK 195
           Y++SGGLHGVG+S VNALS  L + V R       +F RG+             +SP+E 
Sbjct: 122 YKVSGGLHGVGVSCVNALSSWLRLVVRRNGKKHFMEFHRGVAQNRVLETRDGVEVSPMEV 181

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
             +  N RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E  
Sbjct: 182 VGETEN-RGTEVHFMADPTIFGTV-EYHYDILAKRIRELSFLNNGVRIRLTDQRSGKEDD 239

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PE 314
                  F F GG+K +++   + +S++   IF    EK G     VE A+ W +     
Sbjct: 240 -------FAFVGGVKGFVEYINKTKSVLHPTIFHIIGEKDGV---GVEVAMQWNDSYNEN 289

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSV 372
           +  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV
Sbjct: 290 VLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIVDNEIAKKAKVETSGDDMREGLSCVLSV 349

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
            + EP+F+ QTK KLVS + +  VE  +    + +L++ P +A  +   ++E +  R   
Sbjct: 350 KVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICSKIVEAARARDAA 409

Query: 433 RKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           RK RE+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LP
Sbjct: 410 RKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILP 469

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAH 550
           LRGK+LNV  A  +K+ +++QI+ LV ALGC         E LRY ++IIMTDADVDGAH
Sbjct: 470 LRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLEKLRYHRIIIMTDADVDGAH 529

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           I +LLLTF Y++M D+IE+ ++++  PPLF++  G    Y  DE      +     HG
Sbjct: 530 IRTLLLTFLYRQMPDMIERGYVYIAQPPLFKVKAGKDERYLKDEGELNAHMLRLALHG 587



 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G +S    D    +  ++      +  +   R+KGLGEM   QL ET MD N R LL
Sbjct: 728 IKRGERSQAVKD---FKSAMQWLMADAERNVSKQRYKGLGEMNPEQLWETTMDPNVRRLL 784

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           RV+I   +            LMG + + R  FI+  A    ++ 
Sbjct: 785 RVQIEDAI----AADGIFTTLMGDEVEPRRAFIESNALRAGNID 824


>gi|48094245|gb|AAT40430.1| DNA gyrase subunit B [Campylobacter jejuni]
 gi|315057444|gb|ADT71773.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni S3]
          Length = 769

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 248/660 (37%), Positives = 362/660 (54%), Gaps = 50/660 (7%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY AS+I++L+GLE VR RPGMYIG T+   LHH+  EV+DN++DE +AG+ + I+V +
Sbjct: 3   ENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVDNSIDEAMAGHCDTIDVEI 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV+ HP   N  TL ++LT LHAGGKFD  TY++SGGLHGVG+SV
Sbjct: 63  TTEGSCIVSDNGRGIPVDMHP-TENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS +L  TV R   I+ Q+FS G  +S      K +   GT I F PD +IF     
Sbjct: 122 VNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSKK-TGTTIEFWPDDQIFEVT-E 179

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L K  +  AYL+ ++   +  ++       + + E F+F GG+  ++    +  +
Sbjct: 180 FDYEILAKRFRELAYLNSKITINFKDNR-------VGKHESFHFEGGISQFVIDLNKKEA 232

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340
           L  +  F+   E        VE A+ + +   E   S+ N I T +GGTHE+G R+ LTR
Sbjct: 233 LTKAIFFSVDEED-----VNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTR 287

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  Y E      ++   I  +D+    + ++SV + EP+F GQTK KL S   +  V  
Sbjct: 288 VISNYIEANASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVSK 347

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
           A  +    Y  +NPIEA  ++   +  +  R   +K RE   +K ++    LPGKLADC 
Sbjct: 348 ASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQ 407

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +E+++VEGDSAGGSAKQ R RS QA+LPLRGKILNV  A  +KI  ++QI +++
Sbjct: 408 SKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMI 467

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A GC     +    LRY K+IIMTDADVDG+HI +LLLTFF++ M +L+   H++L  P
Sbjct: 468 TAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQP 527

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET------ 631
           PL+   +  K +Y  DE+   + L E    G        ++G+G M    LK+       
Sbjct: 528 PLYLYKKAKKQIYLKDEKALSEYLIETGIEGLN------YEGIG-MND--LKDYLKIVAA 578

Query: 632 ----AMDANKR----TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
                 D  KR    +++R  I        + ++  + +         +F++ +   I +
Sbjct: 579 YRAILKDLEKRFNVISVIRYMIENSNLVKGNNEELFSVI--------KQFLETQGHNILN 630



 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%)

Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
           ++   ++LE+ + + K    I R+KGLGEM   QL ET MD + R LL++ I       +
Sbjct: 681 DKDILEVLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIED----AQ 736

Query: 654 DTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              D+ N  MG + + R  +IQ  A  +  + 
Sbjct: 737 SANDTFNLFMGDEVEPRRDYIQAHAKDVKHLD 768


>gi|15835080|ref|NP_296839.1| DNA gyrase subunit B [Chlamydia muridarum Nigg]
 gi|270285247|ref|ZP_06194641.1| DNA gyrase subunit B [Chlamydia muridarum Nigg]
 gi|270289266|ref|ZP_06195568.1| DNA gyrase subunit B [Chlamydia muridarum Weiss]
 gi|301336643|ref|ZP_07224845.1| DNA gyrase subunit B [Chlamydia muridarum MopnTet14]
 gi|13627141|sp|Q9PKK3|GYRB_CHLMU RecName: Full=DNA gyrase subunit B
 gi|7190505|gb|AAF39313.1| DNA gyrase, subunit B [Chlamydia muridarum Nigg]
          Length = 804

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 227/578 (39%), Positives = 330/578 (57%), Gaps = 18/578 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +    YDAS+I +LEGL+ VR RPGMYIG T    LHHL  EV+DN++DE +AG+   + 
Sbjct: 3   AQEKKYDASAITVLEGLQAVRERPGMYIGDTGVTGLHHLVYEVVDNSIDEAMAGFCTEVV 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFP-----NKSTLEIILTTLHAGGKFDNSTYEISGG 153
           V +  +G ++V DNGRGIPV+ H K         S LE++LT LHAGGKFD  +Y++SGG
Sbjct: 63  VRILEDGGISVSDNGRGIPVQIHEKESAKQGREISALEVVLTVLHAGGKFDKDSYKVSGG 122

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+S VNALS++    V +    +S +FS+G PL+ L+      +KRGT I F PDP
Sbjct: 123 LHGVGVSCVNALSEKFIANVFKDGQAYSMEFSKGAPLTALQVLGST-DKRGTEILFYPDP 181

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            +F     FD A L+K  +  A+L+  +   +  D++            F++ GG+++++
Sbjct: 182 TVFSTCV-FDRAILMKRLRELAFLNRGITIIFEDDRDAGFDKVT-----FFYEGGIQSFV 235

Query: 274 QTKLENRSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHE 331
               +N+  +       +  K+G       E A+ W     E I SY N I T +GGTH 
Sbjct: 236 SYLNQNKESLFPTPIYIQGSKRGDDGDIEFEAALQWNSGYSELIYSYANNIPTRQGGTHL 295

Query: 332 SGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G   ALTR +  Y +     ++    +  +D+    V I+SV +  P+F GQTK KL +
Sbjct: 296 TGFSTALTRAVNSYIKSHNLAKSDKLSLTGEDIREGLVAIVSVKVPNPQFEGQTKQKLGN 355

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN-RKTAIRKLR 448
            D     +    +    +  +NP  A  +++ V   ++ R   ++ RE+  RK+A+   R
Sbjct: 356 SDVGSVAQQISGEVLTTFFEENPQIAKTIVDKVFVAAQAREAAKRARELTIRKSALDSAR 415

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKL DC +      E++IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  +KI 
Sbjct: 416 LPGKLVDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKIF 475

Query: 509 NNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
            NQ+I  ++ ALGC   +       LRY++VIIMTDADVDG+HI +LLLTFFY+ M  LI
Sbjct: 476 QNQEIGSIIAALGCGIGTDNFNLSKLRYKRVIIMTDADVDGSHIRTLLLTFFYRHMSALI 535

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605
           E   +++  PPL+R+++     Y   E+     L    
Sbjct: 536 ENGCVYIAQPPLYRVSKKKDFRYILSEKEMDGYLLNLG 573



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 6/96 (6%)

Query: 592 HDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651
           +     +++++  K  G+  IEI R+KGLGEM A QL +T M+  +RTL+RV +   +  
Sbjct: 712 YTCYTLKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAV-- 769

Query: 652 LKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685
             +       LMG +   R +FI+  A  I   ++ 
Sbjct: 770 --EADHIFTMLMGEEVPPRREFIESHALSIRMSNLD 803


>gi|307543593|ref|YP_003896072.1| DNA gyrase subunit beta [Halomonas elongata DSM 2581]
 gi|307215617|emb|CBV40887.1| DNA gyrase, B subunit [Halomonas elongata DSM 2581]
          Length = 806

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 226/575 (39%), Positives = 340/575 (59%), Gaps = 19/575 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
           +   YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  E++DN++DE +AG+ + I 
Sbjct: 2   SEQAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFELVDNSIDEALAGHCSEIG 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V +  +  +TV DNGRGIP E H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG
Sbjct: 62  VVIHPDESITVRDNGRGIPTEIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +T+ RQ  +  Q +  G  ++PL        + G+R+ FRP  + F +
Sbjct: 121 VSVVNALSEELKLTIWRQGQVHEQIYRHGEAVAPLAVVG-TTEQTGSRVHFRPSSETFQN 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V    + ++         ++E F++ GGL+ ++     
Sbjct: 180 I-EFHYDILAKRLRELSFLNSGVAIRLTDER-------TGKEELFHYEGGLRAFVDHLNT 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N+++++         + G     VE A+ W +     I  Y N I   +GGTH +G R +
Sbjct: 232 NKTVLNPVFHFNVEREDGV---GVEVAMQWNDTFAENIFCYTNNIPQGDGGTHLAGFRAS 288

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 289 LTRTLNHYIEAEGLLKKAKVNTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 348

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  +   F  YLV+ P EA  ++  +++ +  R   RK      RK A+    LPGKLA
Sbjct: 349 VEQEMGRQFSEYLVERPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLA 408

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 409 DCQEKDPSLSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 468

Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            L+ ALGC   R ++  + LRY  +IIMTDADVDG+HI +LLLTFF+++M  LIE+ H+F
Sbjct: 469 TLITALGCGIGREEFDPDKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMSQLIERGHVF 528

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +  PPL++I +G +  Y  DE+     L      G
Sbjct: 529 IAQPPLYKIKRGKQESYLKDEQALTDYLTTTALDG 563



 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 17/121 (14%)

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
           +L+E+   ++      R  +       +D       LE      +  + I R+KGLGEM 
Sbjct: 702 NLVEEG-AYVA-----RGERKKSVGSFYD------ALEWLMNEAQRGLSIQRYKGLGEMN 749

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
             QL ET MD N R +LRV I   +          N LMG + + R  FI+  A  + ++
Sbjct: 750 PDQLWETTMDPNTRRMLRVSIEDAV----AADMMFNTLMGDEVEPRRDFIERNAL-VANL 804

Query: 685 G 685
            
Sbjct: 805 D 805


>gi|294675561|ref|YP_003576176.1| DNA gyrase subunit B [Rhodobacter capsulatus SB 1003]
 gi|294474381|gb|ADE83769.1| DNA gyrase, B subunit [Rhodobacter capsulatus SB 1003]
          Length = 816

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 225/583 (38%), Positives = 337/583 (57%), Gaps = 25/583 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
                    Y A SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DN +DE +AG+
Sbjct: 2   TETPKNKAEYGAESIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGH 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN-----STY 148
           AN + V +  +  ++V DNGRGIPV+ HP+    S  E+I+T LHAGGKF+N     + Y
Sbjct: 62  ANYVAVKIHADSSVSVRDNGRGIPVDIHPE-EGVSAAEVIMTQLHAGGKFNNTDEGGNAY 120

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALSD L + V R + ++  +F +G  +  + +  +   ++GT + 
Sbjct: 121 KVSGGLHGVGVSVVNALSDWLELKVWRNDKVYFARFEKGDCVVHVHEIGEAPGEKGTEVR 180

Query: 209 FR-----PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           F       DP+       +    L    +  A+L+  V+     ++        P + E 
Sbjct: 181 FMASAKTTDPEGTFSNLDYVFKTLETRLRELAFLNSGVRIILEDER-----PAEPLRSEL 235

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           ++ GG++ +++    +++ +  +      E +G     VE A+ W +     +  + N I
Sbjct: 236 HYEGGVREFVKYLDRSKTAVMPDPIYMVGEVRGI---GVEVAMWWNDSYHETVLPFTNNI 292

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR I KYA+ +   +        DD       +LSV + +P+F+
Sbjct: 293 PQRDGGTHLAGFRGALTRTITKYAQDSGIAKREKIDFTGDDAREGLTCVLSVKVPDPKFS 352

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VN 439
            QTK KLVS + +  VEN + +    +  ++P EA  ++  +IE +  R   RK RE   
Sbjct: 353 SQTKDKLVSSEVRPAVENLVNEKLAEWFEEHPTEAKGIVGKIIEAALAREAARKARELTR 412

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKTA+    LPGKLADC +     +E+F+VEGDSAGGSAKQ R R NQAVLPLRGKILNV
Sbjct: 413 RKTAMDVASLPGKLADCQEKDPALSEVFLVEGDSAGGSAKQGRERKNQAVLPLRGKILNV 472

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
             A  +++ ++ QI  L+ ALG    R ++    LRY K++IMTDADVDGAHI +LLLTF
Sbjct: 473 ERARFDRMLSSDQIGTLITALGTGIGRDEFNIAKLRYHKIVIMTDADVDGAHIRTLLLTF 532

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           F+++M +LIE  +L++  PPL+++ +G   VY  D+   +  L
Sbjct: 533 FFRQMPELIEHGYLYIAQPPLYKVARGKSEVYLKDQAALEDYL 575



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L    + G+  + + R+KGLGEM   QL ET +D   RTLL+V ++     + + +D 
Sbjct: 733 DLLTAILQEGEKGLTLQRYKGLGEMNPEQLWETTLDPAARTLLQVRVDD----VAEAEDI 788

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            +KLMG   + R +FIQ+ A  ++++ 
Sbjct: 789 FSKLMGDVVEPRREFIQQNALSVENLD 815


>gi|93009658|gb|ABE98141.1| DNA gyrase subunit B [Mesoplasma coleopterae]
          Length = 563

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 234/576 (40%), Positives = 332/576 (57%), Gaps = 17/576 (2%)

Query: 61  RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           RPGMYIG T +  LHHL  E++DN++DE +AG+AN I +++   G + V DNGRGIPV  
Sbjct: 1   RPGMYIGSTSKAGLHHLVWEIMDNSVDEAMAGFANKIILTITKEGEIIVQDNGRGIPVGI 60

Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
                 KS LE++ T LHAGGKFD+ +Y+ISGGLHGVG SVVNALS  + V V R+  I 
Sbjct: 61  QA-DSGKSALELVFTQLHAGGKFDSDSYKISGGLHGVGASVVNALSLYVDVEVKREGKIH 119

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
            Q FS G       +     N+ GT + F+PDP+IF +   FD   +    +  +YL+  
Sbjct: 120 HQVFSGGGTQQTEIEIIGETNETGTTVRFKPDPEIFLEGTEFDYETIRNKVKQLSYLNKG 179

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
           +    +  +       I +  E++FP G+  Y++ K E +  I+  IF    +       
Sbjct: 180 LVIELNDLR-------IDKHVEYHFPNGILDYVKEKNETKVKINPSIFYVDDKHDDI--- 229

Query: 301 TVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISI 357
            VE A+ +  E  E   ++ N I T EGGTHE GLR +L R I +YAE   T NK A   
Sbjct: 230 EVEVALQYNAEYQENLITFVNNINTHEGGTHEDGLRQSLVRVINRYAEKVATGNKPAAKY 289

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+    V I+S+   +P++ GQTKTKL + DA++ V+  + D F+ +L+++P +A  
Sbjct: 290 SWDDIKEGMVCIVSIRHTDPQYEGQTKTKLANPDAKKAVDAVVGDAFEEFLLKSPEDAKA 349

Query: 418 LLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           +++      + R+  ++ RE   RK+A+    LPGKLADC        EL++VEGDSAGG
Sbjct: 350 IIDKNANAQKARIAAQRAREETRRKSALDTFSLPGKLADCESKDPEIAELYLVEGDSAGG 409

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  RNR  QA+LPLRGK+LNV      +   N +I  +V A+G   +       LRY 
Sbjct: 410 SAKTGRNRRFQAILPLRGKVLNVERVAEVRAFANNEIKSIVTAIGTGIKEDIDLSKLRYG 469

Query: 537 KVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEH 596
           K++IMTDADVDGAHI +LLLTFFY+ M  L+   H+++  PPL++I  G K  YA+ +  
Sbjct: 470 KIVIMTDADVDGAHIRTLLLTFFYRYMKQLVVDGHVYIAQPPLYKIEAGKKVAYAYSDVE 529

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
            +++          +  I R+KGLGEM   QL ET 
Sbjct: 530 LEELKA--GDFKDSRFTIQRYKGLGEMDPIQLWETT 563


>gi|158422633|ref|YP_001523925.1| DNA gyrase B subunit [Azorhizobium caulinodans ORS 571]
 gi|158329522|dbj|BAF87007.1| DNA gyrase B subunit [Azorhizobium caulinodans ORS 571]
          Length = 808

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 226/576 (39%), Positives = 340/576 (59%), Gaps = 17/576 (2%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIA 91
                 ++ + Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +A
Sbjct: 2   AEPMPAASPEEYGAQSIQVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+A  + V+L+ +G +TV D+GRGIP   H +    S  E+I+T LHAGGKF+ ++Y++S
Sbjct: 62  GHAKEVTVTLNADGSVTVTDDGRGIPTGIHEE-EGVSAAEVIMTQLHAGGKFNQNSYKVS 120

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFR 210
           GGLHGVG+SVVNALS  L +T+ R       +F  G   +PL+        KRGT++TF 
Sbjct: 121 GGLHGVGVSVVNALSTYLDLTIWRDGKEHYMRFRHGDAEAPLKVVGDAPAGKRGTKVTFL 180

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P P+ F     FD A L    +  A+L+  V    +  +        P++EE ++ GG++
Sbjct: 181 PSPETFTKI-EFDYATLEHRLRELAFLNSGVLITLTDAR-----GPEPKREELHYEGGVE 234

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++    ++  +  +    + E+ G    TVE A++W +     I  + N I   + GT
Sbjct: 235 AFVRYLDRSKQALLQKPVVIRAERDGI---TVEAALSWNDGYHENILCFTNNIPQRDRGT 291

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G   ALTR +  YA+ +    K  +    +D       +LSV + +P+F+ QTK KL
Sbjct: 292 HFTGFAAALTRQVIGYADRSGIAKKEKVDPTGEDCREGLTAVLSVKVPDPKFSSQTKDKL 351

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
           VS + +  VE+ + D    +  +NP E   ++  V+E +  R   R+ R+   RK  +  
Sbjct: 352 VSSEVRPVVESLVGDALSTWFEENPNEGKSVVGKVVEAAAAREAARRARDLTRRKNPLDV 411

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +E+FIVEGDSAGGSAKQ R+R+ QAVLPLRGKILNV  A  +K
Sbjct: 412 ASLPGKLADCQERDPAKSEIFIVEGDSAGGSAKQGRDRAFQAVLPLRGKILNVERARFDK 471

Query: 507 IRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           + ++ QI  L+ ALG    R  +    LRY K+IIMTDADVDG+HI +LLLTFF+++M +
Sbjct: 472 MLSSDQIGTLITALGTGIGRDDFDIAKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPE 531

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++E+ H+++  PPLF++ +G    Y  DE+  +  L
Sbjct: 532 VLERGHIYIAQPPLFKVARGKSETYIKDEKALEDYL 567



 Score =  116 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 4/80 (5%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            + +     G+  + + R+KGLGEM   QL ET +D N R+LL+V++      +    D 
Sbjct: 726 DLFDAITDAGRKGLSLQRYKGLGEMNPEQLWETTLDINARSLLQVKV----KEVDAADDL 781

Query: 659 INKLMGTKADERFKFIQERA 678
            N+LMG   + R  FIQE A
Sbjct: 782 FNRLMGDVVEPRRDFIQENA 801


>gi|319943518|ref|ZP_08017800.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lautropia mirabilis ATCC
           51599]
 gi|319743333|gb|EFV95738.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lautropia mirabilis ATCC
           51599]
          Length = 714

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 266/726 (36%), Positives = 375/726 (51%), Gaps = 61/726 (8%)

Query: 1   MTDDSI-------DLFSTLPPQSQGSSEKLKKSGEI-PDSPAFANQSASD----NYDASS 48
           M DD+        D+       S      +  S EI  D+P  A +S+S     +Y  +S
Sbjct: 1   MIDDAASAIRVFGDVTGRTVAVSATQGGTVAASPEIIGDNPRMATRSSSSKNGADYSEAS 60

Query: 49  IRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLT 108
           IR+L+GLEPVR RPGMY   T  +   H+  EVIDNA DE + GYA  I+V L  +G + 
Sbjct: 61  IRVLKGLEPVRQRPGMY---TRTENPLHIIQEVIDNAADEALGGYARHIDVRLFKDGRVE 117

Query: 109 VVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLHGVGISVVNAL 165
           V D+GRGIPV  HP       +EI+ T LHAGGKFD      Y  SGGLHGVG+SV NAL
Sbjct: 118 VTDDGRGIPVGLHP-DEGVPVIEIVFTRLHAGGKFDKTAGGAYSFSGGLHGVGVSVTNAL 176

Query: 166 SDELHVTVAR--------QNTIFSQKFSRGIPLSPLEKKEKVRNK--RGTRITFRPDPKI 215
           S  L VTV R             +  F+ G     L  +   R++   GTR+T  PDPK 
Sbjct: 177 SRRLEVTVWRKGDKDAAGNRLAHTIAFADGELAESLVARPATRDEPSSGTRVTVTPDPKY 236

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F        A L ++ +SKA L   V+   + +K         E  ++ +  GL+ YLQ 
Sbjct: 237 FDSAT-IPVAELERLLRSKAVLLPGVRVTLTLEK-------TGETRQWQYDEGLRGYLQE 288

Query: 276 KLENRSLISS------EIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGG 328
           +L     +        + + G+ +          W +A+ E  P    SY N I T  GG
Sbjct: 289 ELAQEPGVEPLVLFEDQQYAGRGDDSFAEGEGAHWVVAFTENGPLARESYVNLIPTPAGG 348

Query: 329 THESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           THESGLR  L   I+ + EL     + + ++++D    A  +LS  + +P+F GQTK +L
Sbjct: 349 THESGLREGLFTAIRGFIELHNLQPKGVRLMAEDAFARASFVLSARVLDPQFQGQTKERL 408

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL 447
            S DA R V  A+R  F+ +L Q+  +A KL E VI +++ R R    ++V ++      
Sbjct: 409 SSRDAVRLVSGAVRTQFEFWLNQHVDQARKLAELVIRQAQARQR--SAQKVEKRKGSGVA 466

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKL DC        ELF+VEGDSAGGSAK  R++ NQAVLPLRGK+LN      +++
Sbjct: 467 VLPGKLTDCESTDTAHNELFLVEGDSAGGSAKMGRDKENQAVLPLRGKLLNTWETEPDRL 526

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDL---RYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
             N +I D+  A+G     +    DL   RY K+ I++DADVDG+HI  LLLT F++   
Sbjct: 527 FANNEIHDIAVAIGVDPHPRGASPDLSGLRYGKICILSDADVDGSHIQVLLLTLFFRHFP 586

Query: 565 DLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKIEISR 616
            LI+  H+++  PPL+R+    +G +    +Y  D    Q   E+ +K G  +G   +SR
Sbjct: 587 ALIDAGHIYVARPPLYRVDVPARGKQPLRKIYCLDARELQHTEEKLRKDGMREGSWTVSR 646

Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQ 675
           FKGLGEM A QL ET ++   R+L +V        + DT+     LMG  +A  R  +++
Sbjct: 647 FKGLGEMTAEQLWETTLNPATRSLSQVRY--GAVPVPDTEAQFTLLMGKGEAAGRRSWLE 704

Query: 676 ERASFI 681
           E     
Sbjct: 705 EHGDQA 710


>gi|84501255|ref|ZP_00999460.1| DNA gyrase subunit B [Oceanicola batsensis HTCC2597]
 gi|84390546|gb|EAQ03034.1| DNA gyrase subunit B [Oceanicola batsensis HTCC2597]
          Length = 805

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 228/580 (39%), Positives = 343/580 (59%), Gaps = 16/580 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
              Q ++  YDA SI++L+GL+ VR RPGMYIG TD+   LHH+  E +DN +DE +AG+
Sbjct: 2   AEPQQSAPAYDADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMIYEAVDNGIDEALAGH 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ ++V +  +  ++V DNGRGIPV  H +    S  E+I+T LHAGGKFD ++Y++SGG
Sbjct: 62  ADFVKVKIHADNSVSVRDNGRGIPVNMHAE-EGISAAEVIMTQLHAGGKFDQNSYKVSGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVGISVVNALSD L + + R       +F   + + PL+       ++GT + F    
Sbjct: 121 LHGVGISVVNALSDWLELRIWRDGKEHYVRFEDSVTVEPLKVVGDADGEKGTEVRFLSST 180

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           + F +   +D A L K  +  A+L+  V+     ++        P + E ++ GG+K ++
Sbjct: 181 QTFSNLN-YDYATLEKRLRELAFLNSGVRIVLEDER-----PAEPLRTELFYEGGVKEFV 234

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +    ++  + SE    + E+ G     VE A+ W +     +  + N I   +GGTH +
Sbjct: 235 KYLDRSKQAMMSEPIHVEGERDGI---GVEVAMWWNDSYHETVLPFTNNIPQRDGGTHMA 291

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR + +YA  +    +  +S   DD       +LSV + +P+F+ QTK KLVS 
Sbjct: 292 GFRGALTRTLTRYATESGVAKREKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 351

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           + +  VEN + +    +  +NP EA  ++  ++E +  R   RK RE   RKTA+    L
Sbjct: 352 EVRPAVENLVGEKLAEWFEENPNEAKMIVGKIVEAALAREAARKARELTRRKTAMDVNYL 411

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
            GKL DCS+     TE+F+VEGDSAGGSA+  R+R  QAVLPLRGKILNV  A  +++ +
Sbjct: 412 AGKLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRGTQAVLPLRGKILNVERARFDRMLS 471

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q+I +LV ALG    R ++    LRY K++IMTDADVDGAHI +LLLTFFY++M +LIE
Sbjct: 472 SQEIGNLVMALGTGIGRDEFDISKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIE 531

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             +L++  PPL+++++G   VY  D+   +  L +    G
Sbjct: 532 GGYLYIAQPPLYKVSRGKSEVYLKDQAALEDYLIDQGTEG 571



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L+     G+  +++ R+KGLGEM   QL ET +D   RTLL+V +      + +  D 
Sbjct: 722 DLLQAILDEGERGLQLQRYKGLGEMNPEQLWETTLDPEARTLLQVRVED----MAEADDL 777

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R +FIQ  A  ++++ 
Sbjct: 778 FTKLMGDVVEPRREFIQANALNVENLD 804


>gi|120610027|ref|YP_969705.1| DNA topoisomerase IV subunit B [Acidovorax citrulli AAC00-1]
 gi|120588491|gb|ABM31931.1| DNA topoisomerase IV subunit B [Acidovorax citrulli AAC00-1]
          Length = 660

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 236/672 (35%), Positives = 344/672 (51%), Gaps = 38/672 (5%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
            A  +  +  +Y   SIR+L+GLEPV+ RPGMY   T      H+  EV+DNA DE +AG
Sbjct: 2   AAKPSSVSPSDYSEGSIRVLKGLEPVKQRPGMY---TRTDNPLHIIQEVLDNAADEALAG 58

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA---GGKFDNSTYE 149
           +   I+V+L  +G + + D+GRGIP   HP+      +E++ T LHA     K     Y 
Sbjct: 59  HGKRIKVTLFADGSVGIEDDGRGIPFGLHPE-EKAPVIELVFTRLHAGGKFDKGKGGAYS 117

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR--GTRI 207
            SGGLHGVG+SV NAL+  L  T  R   I    F  G    PL  +     +R  GT +
Sbjct: 118 FSGGLHGVGVSVTNALALRLEATTHRDGQIARLVFEGGDVTEPLTARPLAAGERRQGTTV 177

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
              PD   + +        L+ + +SKA L   V      +K         E + + + G
Sbjct: 178 RVWPDG-RYFESTALPMGELVHLLRSKAVLMPGVTVSLVNEK-------TKETQTWQYKG 229

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW----CEENPEITSYCNTIL 323
           GL+ YL   L    +I      G  ++        E A        E  P   SY N I 
Sbjct: 230 GLRDYLGQSLPADPVIPLFEGEGYADRHNESFAEGEGAAWCVGFTDEGAPVRESYVNLIP 289

Query: 324 TDEGGTHESGLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
           T  GGTH++GLR  L + +K + E  +   + + ++ +D+   A  +LS  + +P+F GQ
Sbjct: 290 TSAGGTHDAGLRDGLFQAVKSFIELHSLLPKGVKLLPEDVFARASYVLSAKVLDPQFQGQ 349

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
            K KL S DA R V + +R   + +L Q+     KL E  I+ ++ R +  ++ E  + +
Sbjct: 350 VKEKLNSRDAVRLVSSYVRPALELWLHQHVDYGRKLAELAIKAAQTRQKAGQKVEKKKGS 409

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
            +  L  PGKL DC        E+F+VEGDSAGGSAK  R++  QAVLPLRGK+LN    
Sbjct: 410 GVAVL--PGKLTDCESRDLSHNEVFLVEGDSAGGSAKMGRDKECQAVLPLRGKVLNTWEV 467

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFF 559
             +++  N +I D+  ALG          D   LRY KV I++DADVDG+HI  LLLT F
Sbjct: 468 DRDRLFANTEIHDISVALGVDPHGPNDTPDLSGLRYGKVCILSDADVDGSHIQVLLLTLF 527

Query: 560 YQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGK 611
           ++    LIE  H+++  PPL+R+    +G K    VYA D+   + IL++  K G  + K
Sbjct: 528 FRHFPKLIEAGHIYVARPPLYRVDVPARGKKPASKVYALDDGELEAILDKCAKDGVAREK 587

Query: 612 IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADER 670
            +ISRFKGLGEM A QL ET ++ + R LL V++        +T+  I KLMG  +A  R
Sbjct: 588 CQISRFKGLGEMNAEQLWETTLNPDTRRLLPVQLGDLG--FAETEGLITKLMGKGEAAAR 645

Query: 671 FKFIQERASFID 682
            + ++     ++
Sbjct: 646 RELMELHGDAVE 657


>gi|107024100|ref|YP_622427.1| DNA gyrase subunit B [Burkholderia cenocepacia AU 1054]
 gi|116688027|ref|YP_833650.1| DNA gyrase subunit B [Burkholderia cenocepacia HI2424]
 gi|105894289|gb|ABF77454.1| DNA gyrase subunit B [Burkholderia cenocepacia AU 1054]
 gi|116646116|gb|ABK06757.1| DNA gyrase subunit B [Burkholderia cenocepacia HI2424]
          Length = 824

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 235/594 (39%), Positives = 340/594 (57%), Gaps = 33/594 (5%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94
            +Q  + +Y ASSI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +AGY 
Sbjct: 6   NSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYC 65

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVE--NHPKFP-NKSTLEIILTTLHAGGKFDNSTYEIS 151
           N I V++  +  ++V DNGRGIP +   + K    +S  EI++T LHAGGKFD ++Y++S
Sbjct: 66  NDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQNSYKVS 125

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKV 199
           GGLHGVG+S VNALS  L +TV R       +F RG+             +SP+      
Sbjct: 126 GGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLEVVDGVEVSPMLVTGDT 185

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            N RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E      
Sbjct: 186 EN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD---- 239

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              F F GG+K +++   + ++ +   +F    EK G     VE A+ W +     +  +
Sbjct: 240 ---FAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGV---GVEVAMQWNDSYNENVLCF 293

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + E
Sbjct: 294 TNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPE 353

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F+ QTK KLVS + +  VE  +    + +L++ PI+A  +   ++E +  R   RK R
Sbjct: 354 PKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAR 413

Query: 437 EVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK
Sbjct: 414 EMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGK 473

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASL 554
           +LNV  A  +K+ +++QI+ LV ALGC    +    + LRY ++IIMTDADVDGAHI +L
Sbjct: 474 VLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTL 533

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           LLTF Y++M D+IE+ ++++  PPL++I  G    Y  D+      +      G
Sbjct: 534 LLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQG 587



 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
              +  ++      +  +   R+KGLGEM   QL ET MD   R LLRV+I   +     
Sbjct: 737 ADFKSAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMDPAVRRLLRVQIEDAI----A 792

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
                  LMG   + R  FI+  A    ++ 
Sbjct: 793 ADGIFTTLMGDDVEPRRAFIESNALRAGNID 823


>gi|186474776|ref|YP_001856246.1| DNA gyrase subunit B [Burkholderia phymatum STM815]
 gi|184191235|gb|ACC69200.1| DNA gyrase, B subunit [Burkholderia phymatum STM815]
          Length = 823

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 227/594 (38%), Positives = 338/594 (56%), Gaps = 31/594 (5%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGY 93
             N    ++Y ASSI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +AG+
Sbjct: 4   TNNSQPDNSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGH 63

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
            + I+V +  +  ++V DNGRGIP          P +S  EI++T LHAGGKFD ++Y++
Sbjct: 64  CDDIQVIIHADNSISVTDNGRGIPTGIKRDDKHDPKRSAAEIVMTELHAGGKFDQNSYKV 123

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--LEKKEKV--------- 199
           SGGLHGVG+S VNALS  L +TV R       +F RG+  +    +   +          
Sbjct: 124 SGGLHGVGVSCVNALSSWLRLTVRRDGKKHFMEFHRGVVQNRVIEQVDGESLSPIPVVGE 183

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
              RGT + F  D  IFG+   +    L K  +  ++L+  V+   +  +   E      
Sbjct: 184 TENRGTEVHFMADETIFGNV-EYHYDILAKRIRELSFLNNGVRIRLTDQRSGKEDD---- 238

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              F F GG+K +++   + +S++   IF    EK+G     VE A+ W +     +  +
Sbjct: 239 ---FAFVGGVKGFVEYINKTKSVLHPTIFHIVGEKEGV---GVEVAMQWNDSYNENVLCF 292

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + E
Sbjct: 293 TNNIPQRDGGTHLTGLRAAMTRVINKYIADHEIAKKAKVETSGDDMREGLSCVLSVKVPE 352

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F+ QTK KLVS + +  VE  +    + +L++ P +A  +   +++ +  R   RK R
Sbjct: 353 PKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVDAARARDAARKAR 412

Query: 437 EVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E+ R+   +  + LPGKLADC +     +E++IVEGDSAGGSAKQ R+R  QA+LPLRGK
Sbjct: 413 EMTRRKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGK 472

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASL 554
           +LNV  A  +K+ +++QI+ L+ ALGC    +    + LRY ++IIMTDADVDGAHI +L
Sbjct: 473 VLNVEKARYDKLLSSEQIVTLITALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTL 532

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           LLTFFY++M ++IE+ ++++  PPL+++  G    Y  D       +     +G
Sbjct: 533 LLTFFYRQMPEMIERGYIYIAQPPLYKVKAGKDERYLKDTAELNAHMLRLALNG 586



 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             +  ++      +  +   R+KGLGEM   QL ET MD N R LLRV+I   +      
Sbjct: 737 DFKSAMKWLIADAERNVSKQRYKGLGEMNPEQLWETTMDPNVRRLLRVQIEDAI----AA 792

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
                 LMG + + R  FI+  A    ++ 
Sbjct: 793 DGIFTTLMGDEVEPRRAFIESNALRAGNID 822


>gi|256376406|ref|YP_003100066.1| DNA gyrase subunit B domain protein [Actinosynnema mirum DSM 43827]
 gi|255920709|gb|ACU36220.1| DNA gyrase subunit B domain protein [Actinosynnema mirum DSM 43827]
          Length = 680

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 222/679 (32%), Positives = 332/679 (48%), Gaps = 49/679 (7%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y A  +  LEGLE VR RPGMYIG TD + ++HLFSEVIDN+ DE +AG+A  I V+L  
Sbjct: 7   YGADDLTHLEGLEAVRKRPGMYIGSTDSRGVNHLFSEVIDNSTDEGVAGHATRITVTLHP 66

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G + V D+GRGIP   H K    S +E++LT LHAGGKF  S Y+ SGGLHGVG S VN
Sbjct: 67  DGSVQVDDDGRGIPTGVHAK-SGLSGVELVLTRLHAGGKFGGSGYKTSGGLHGVGASAVN 125

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-------------RNKRGTRITFR 210
           ALS    V V R+       F+ G+P        K                K GT   + 
Sbjct: 126 ALSHRYDVVVRREGKTHEMSFAHGVPGVFDGPGPKAAFTRQSGLRVTGRTRKTGTSTRYW 185

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
            D + F + A  D   +    ++ A+L   V       +   +       E F++PGGL 
Sbjct: 186 HDSRYFENGAALDHEAVRAKLRNTAFLVPGVTYVL---RSAVDGKIAE--EVFHYPGGLA 240

Query: 271 TYLQTKLENRSLISSEIFTGKTE---------KKGTHR------GTVEWAIAWCEENPEI 315
             +     +     +       E         + G  R        VE A+ W       
Sbjct: 241 DMVDFLAPSSEKAVTGTIVITGEGVYHENAADENGVMRSKVERHAEVEIALRWGTGYERT 300

Query: 316 -TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ---NKRAISIISDDLMISAVGILS 371
              + NTI    GGTH  G   A+ + +++    T+     +      DD++     ++ 
Sbjct: 301 VECFTNTIRNVHGGTHRRGFERAVLKSVQEAIGRTRGLLKPKEDPPTLDDVLEGMTAVVH 360

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL--VQNPIEATKLLEWVIERSEER 429
           V + EP+F  QTK +L +    R V   +      +    +   EA  +L+ V++ +  R
Sbjct: 361 VRVPEPQFTSQTKDELSTAGVTRVVLALVDKHVKAWTEDRRTKAEAKVVLQKVVDAARVR 420

Query: 430 LRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
           L +++Q++   RKTA+    +P KL DC       +ELF+VEGDSA GSA+ AR    QA
Sbjct: 421 LTQKQQKDAARRKTALEGAAMPPKLVDCRTTGVARSELFLVEGDSALGSARMARVSEYQA 480

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           +LPLRGKILNV  A       N +I  +VQ LG  T   +    +RY +VI+M DADVDG
Sbjct: 481 LLPLRGKILNVQKASLADTLRNAEIASIVQVLGAGTGRTFDLSTMRYGRVILMADADVDG 540

Query: 549 AHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR-ITQGT--KSVYAHDEEHKQKILEEFK 605
           +HI +LL+T F + M  +IE   L+   PPL + +T+G   ++ +   +   ++ +   +
Sbjct: 541 SHIRTLLITLFAKYMRPVIEDGRLYAAMPPLHKVVTKGRNAETHFTFTQREMEQKVARLE 600

Query: 606 KHGKGKIE-ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMG 664
           + GK  ++ + RFKGLGEM A +L +T M+   R++ R+ +     +    +      MG
Sbjct: 601 RAGKTVVKPVPRFKGLGEMDAEELWDTTMNPATRSVRRITLADVEAAEAALELL----MG 656

Query: 665 TKADERFKFIQERASFIDD 683
            K + R  ++   A+ +D 
Sbjct: 657 EKVEPRRAWLVASAARVDQ 675


>gi|283953662|ref|ZP_06371193.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 414]
 gi|283794703|gb|EFC33441.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 414]
          Length = 769

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 248/660 (37%), Positives = 362/660 (54%), Gaps = 50/660 (7%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY AS+I++L+GLE VR RPGMYIG T+   LHH+  EV+DN++DE +AG+ + ++V +
Sbjct: 3   ENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVDNSIDEAMAGHCDTVDVEI 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV+ HP   N  TL ++LT LHAGGKFD  TY++SGGLHGVG+SV
Sbjct: 63  TTEGSCIVSDNGRGIPVDIHP-TENIPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS +L  TV R   I+ Q+FS G  +S      K +   GT I F PD +IF     
Sbjct: 122 VNALSKKLVATVERNGKIYRQEFSEGKIISEFGVIGKSKK-TGTTIEFWPDDQIFE-MTE 179

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F+   L+K  +  AYL+ ++   +  ++       I + E F+F GG+  ++    +  +
Sbjct: 180 FNYEILVKRFRELAYLNPKITINFKDNR-------IGKHESFHFEGGISQFVTDLNKKEA 232

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340
           L  +  F+   E        VE A+ + +   E   S+ N I T +GGTHE+G R+ LTR
Sbjct: 233 LTKAIFFSVDEED-----VNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTR 287

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  Y E      ++   I  +D+    + ++SV + EP+F GQTK KL S   +  V  
Sbjct: 288 VISNYIEANASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVSK 347

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
           A  +    Y  +NPIEA  ++   +  +  R   +K RE   +K ++    LPGKLADC 
Sbjct: 348 ASFEYLSKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQ 407

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +E+++VEGDSAGGSAKQ R RS QA+LPLRGKILNV  A  +KI  ++QI +++
Sbjct: 408 SKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMI 467

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A GC     +    LRY K+IIMTDADVDG+HI +LLLTFF++ M +L+   +++L  P
Sbjct: 468 TAFGCGVGEDFNLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGYIYLAQP 527

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET------ 631
           PL+   +  K +Y  DE+   + L E    G        ++G+G M    LK+       
Sbjct: 528 PLYLYKKAKKQIYLKDEKALSEYLIETGIEGLN------YEGIG-MND--LKDYLKIVAA 578

Query: 632 ----AMDANKR----TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
                 D  KR    +++R  I        + +   N +         KF++ +   I +
Sbjct: 579 YRVILKDLEKRFNVISVIRYMIENSNLVKGNNEKLFNVI--------KKFLETQGHNILN 630



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           +ILE+ + + K    I R+KGLGEM   QL ET MD + R LL++ I       +   D+
Sbjct: 686 EILEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIED----AQSANDT 741

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            N  MG + + R  +IQ  A  +  + 
Sbjct: 742 FNLFMGDEVEPRRDYIQAHAKDVKHLD 768


>gi|171316343|ref|ZP_02905563.1| DNA gyrase, B subunit [Burkholderia ambifaria MEX-5]
 gi|171098472|gb|EDT43274.1| DNA gyrase, B subunit [Burkholderia ambifaria MEX-5]
          Length = 824

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 232/593 (39%), Positives = 337/593 (56%), Gaps = 31/593 (5%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94
            +Q  + +Y ASSI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +AGY 
Sbjct: 6   NSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYC 65

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVE--NHPKFP-NKSTLEIILTTLHAGGKFDNSTYEIS 151
           N I V++  +  ++V DNGRGIP +   + K    +S  EI++T LHAGGKFD ++Y++S
Sbjct: 66  NDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQNSYKVS 125

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK-----------EKVR 200
           GGLHGVG+S VNALS  L +TV R       +F RG+    + ++               
Sbjct: 126 GGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQERVLEQVDGVEVSPMLVTGDT 185

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
             RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E       
Sbjct: 186 ENRGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD----- 239

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
             F F GG+K +++   + ++ +   IF    EK G     VE A+ W +     +  + 
Sbjct: 240 --FAFAGGVKGFVEYINKTKTNLHPTIFHANGEKDGV---GVEVAMQWNDSYNENVLCFT 294

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + EP
Sbjct: 295 NNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEP 354

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F+ QTK KLVS + +  VE  +    + +L++ P++A  +   ++E +  R   RK RE
Sbjct: 355 KFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPLDAKIICGKIVEAARARDAARKARE 414

Query: 438 VNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
           + R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+
Sbjct: 415 MTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKV 474

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLL 555
           LNV  A  +K+ +++QI+ LV ALGC         + LRY ++IIMTDADVDGAHI +LL
Sbjct: 475 LNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLL 534

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           LTF Y++M D+IE+ ++++  PPL++I  G    Y  D+      +      G
Sbjct: 535 LTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDTELNAHMLRLALQG 587



 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
              +  ++      +  +   R+KGLGEM   QL ET MD   R LLRV+I   +     
Sbjct: 737 NDFKSAMKWLLADAERNVSKQRYKGLGEMNPGQLWETTMDPAVRRLLRVQIEDAI----A 792

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
                  LMG   + R  FI+  A    ++ 
Sbjct: 793 ADGIFTTLMGDDVEPRRAFIESNALRAGNID 823


>gi|254496738|ref|ZP_05109597.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella
           drancourtii LLAP12]
 gi|254354033|gb|EET12709.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella
           drancourtii LLAP12]
          Length = 805

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 226/576 (39%), Positives = 354/576 (61%), Gaps = 19/576 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S   +YD+S+I++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGY   I
Sbjct: 2   SVDASYDSSNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKEI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V++  +  ++V D+GRGIPV+ H +   +S  E+ILT LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  FVTIHSDESISVKDDGRGIPVDIHQE-EGRSAAEVILTILHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+ELH+TV R   I+ Q +  G+P +P+       N  GT+I F+P  + F 
Sbjct: 121 GVSVVNALSEELHLTVRRHGKIYEQHYRHGVPDAPIAVTGDANN-TGTQIWFKPSAETFS 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  +YL+  V      ++          ++ F++ GG++ +++   
Sbjct: 180 NI-EFHYDILAKRLRELSYLNSGVCIHLFDERSQ-------RQDTFHYEGGIQAFVEHLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRV 336
           +++++I+  +F+   EK       VE ++ W +   E    + N I   +GGTH +G R 
Sbjct: 232 KHKTVITPVVFSMIAEKDNI---VVELSMQWNDSYQETLYCFTNNIPQRDGGTHMAGFRA 288

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  +S   DD       +LSV + +P+F+ QTK KLVS + + 
Sbjct: 289 ALTRTLNNYIEAEGYAKKAKVSPTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKS 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE+++ + F+ +L++NP  A  ++  +I+ +  R   R+ R    RK A+    LPGKL
Sbjct: 349 VVESSVSEKFNDFLLENPAIAKAIVSKIIDAARAREAARRAREMTRRKGALDIAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+  +Q++
Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKMLASQEV 468

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC     +Y  + +RY ++IIMTDADVDG+HI +LLLTFFY++  +L+E+ ++
Sbjct: 469 ATLITALGCGIGPDEYNPDKVRYHRIIIMTDADVDGSHIRTLLLTFFYRQTRELLERGYI 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++  PPL+++ +G +  Y  D+E     L +    G
Sbjct: 529 YIAQPPLYKVKRGKQEQYVKDDEALFDYLTQSALDG 564



 Score =  136 bits (343), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 4/91 (4%)

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
           E+ ++ L       K    I R+KGLGEM   QL ET MD   R +L+V I   +     
Sbjct: 718 ENFEQALAWLMDEAKRGQTIQRYKGLGEMNPEQLWETTMDPAARRMLQVSIEDGV----A 773

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
                  LMG   + R  FI+  A   +++ 
Sbjct: 774 ADAIFTTLMGDNVEPRRDFIESNALDAENID 804


>gi|119947311|ref|YP_944991.1| DNA gyrase, B subunit [Psychromonas ingrahamii 37]
 gi|119865915|gb|ABM05392.1| DNA gyrase subunit B [Psychromonas ingrahamii 37]
          Length = 809

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 231/602 (38%), Positives = 348/602 (57%), Gaps = 35/602 (5%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
           A ++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I 
Sbjct: 2   AENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVLDNSIDETLAGFCTDII 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
            ++  +G ++V D+GRGIPV+ H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG
Sbjct: 62  TTIHTDGSVSVRDDGRGIPVDMHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS++L +TV R   I+ Q +  G+P +P+        + GT + F P  + F D
Sbjct: 121 VSVVNALSEKLRLTVKRHGHIYQQTYIHGVPEAPIAIIGDT-EQTGTELRFWPSKETFSD 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V       +E        + + F++ GG++ ++    +
Sbjct: 180 TL-FHYDILAKRLRELSFLNSGVSIKLFDKRE------EDKSDHFHYEGGIEAFVNYLNK 232

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ I  +IF   T+ +      VE A+ W +     I  + N I   +GG+H +G R A
Sbjct: 233 NKTPIHQKIFHFSTDHEDGTN--VEVAMQWNDGFQENIYCFTNNIPQKDGGSHLTGFRGA 290

Query: 338 LTRGIKKYAEL-----TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           LTR +  Y E         K   +    D       ++SV + +P+F+ QTK +LVS + 
Sbjct: 291 LTRTLNNYMEKEMGKVKNAKNKTATEGGDSREGLTAVISVKVPDPKFSSQTKDRLVSSEV 350

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPG 451
           +  VE A+ +    +L++NP EA  +   +I+ +  R   RK      RK A+    LPG
Sbjct: 351 RPVVEGAMNEHLQEFLLENPAEARIITGKIIDAARAREAARKARDMTRRKGALDLAGLPG 410

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL+IVEGDSAGGSAKQ R+R NQA+LPL+GKILNV  A  +K+ ++Q
Sbjct: 411 KLADCQEKDPALSELYIVEGDSAGGSAKQGRSRKNQAILPLKGKILNVEKARFDKMLSSQ 470

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALGC   R +Y  E  RY  +IIMTDADVDG+HI +LLLTFF+++M +LIE  
Sbjct: 471 EVATLITALGCGIGRDEYNPEKTRYHHIIIMTDADVDGSHIRTLLLTFFFRQMPELIENG 530

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH-----------GKGKIE----IS 615
           ++++  PPL++I +G +  Y  DE   Q  L                 G   IE    I 
Sbjct: 531 YIYIAQPPLYKIKKGKQEDYVKDEAAMQAFLTRLAMENSSLHINSDAPGISGIELESMIQ 590

Query: 616 RF 617
           R+
Sbjct: 591 RY 592



 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G +     +     + +       K  + I R+KGLGEM   QL ET MD + R +L
Sbjct: 712 IKRGERRKEVKN---FIEAVNWLMHEAKRGLYIQRYKGLGEMNPGQLWETTMDPSARRML 768

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +          + LMG   + R +FI++ A   +++ 
Sbjct: 769 QVTIQDAVG----ADQLFSTLMGDHVEPRREFIEKNALRAENLD 808


>gi|108758234|ref|YP_628545.1| DNA gyrase subunit B [Myxococcus xanthus DK 1622]
 gi|108462114|gb|ABF87299.1| DNA gyrase, B subunit [Myxococcus xanthus DK 1622]
          Length = 815

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 224/586 (38%), Positives = 331/586 (56%), Gaps = 17/586 (2%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86
            E   +   A       Y   SI  LEG E VR RPGMYIG T    LH L  EV+DNA+
Sbjct: 1   MEKTPATGSAVAPPPVEYGTDSITKLEGREAVRKRPGMYIGDTMAYGLHKLVYEVVDNAV 60

Query: 87  DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146
           DE +AG+   IEV +  +G L+V DNGRGIPV  HPKFP K TLE++LT LHAG KF N 
Sbjct: 61  DESLAGHCTDIEVVIHVDGSLSVQDNGRGIPVGPHPKFPGKDTLEVVLTELHAGSKFGNG 120

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
            Y++SGGLHGVG++ VN LS+   V V R   ++ Q +++G+P +P  +     +KRGT 
Sbjct: 121 AYKVSGGLHGVGVTCVNFLSEWFKVRVHRNGIVYEQAYAQGVPDTPPREVG-TTDKRGTH 179

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F+PD  +      F+   L +  +  A+L+  +      ++   E         F F 
Sbjct: 180 IAFKPDATVMEL-VEFNFETLSQRLRELAFLNAGLHIVVRDERTNKEHD-------FKFD 231

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+ ++++   +++  +  +  +  TE++G     ++ A+ W +     I ++ N I T 
Sbjct: 232 GGISSFVEYLNKSKQTLHDKPISFSTEREGVM---LDIAMQWNDGYDERIYTFANNINTH 288

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQT 383
           EGG+H SG + ALTR +  YAE     + +      +D       ++SV +  P+F GQT
Sbjct: 289 EGGSHLSGFKAALTRTLNSYAEKGSLWKDLKETPTGEDAREGLSAVISVKLTNPQFEGQT 348

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKT 442
           KTKL + + +  VE  + D    +L + P+ A K++  +          R+ +  V RK 
Sbjct: 349 KTKLGNSEVKGLVEQMVNDQLGSFLEETPMVAKKVVAKIGDACRARLAARKARETVRRKG 408

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
            +    LPGKLADC     + +EL+IVEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A
Sbjct: 409 VLDGGGLPGKLADCQSRDPNESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKA 468

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
             EK+  + +I+ L+ ALG       Y  E  RY ++I+MTDADVDG+HI +LLLTFF++
Sbjct: 469 RFEKMLTSAEIVTLITALGTGIGAEDYDPEKARYHRIILMTDADVDGSHIRTLLLTFFFR 528

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607
           +M +L+++ +L++  PPL+++T+  K  Y  DE    + L +    
Sbjct: 529 QMPELLQKGYLYIAQPPLYKVTRNKKDQYVKDEHALNEYLLKIASE 574



 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 7/106 (6%)

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           +++      +     +    +L   +K  +  + + R+KGLGEM   QL +T M+   RT
Sbjct: 716 YKVRVDAGEITVFSVQE---VLAAVRKDAQRGLGLQRYKGLGEMNPEQLWDTTMNPATRT 772

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           LL+V +   + S     +  + LMG   + R +FI+  A  + ++ 
Sbjct: 773 LLQVRVEDAVES----DEIFSLLMGEAVEPRREFIERNALDVQNLD 814


>gi|78064661|ref|YP_367430.1| DNA gyrase subunit B [Burkholderia sp. 383]
 gi|77965406|gb|ABB06786.1| DNA gyrase subunit B [Burkholderia sp. 383]
          Length = 824

 Score =  497 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 232/593 (39%), Positives = 336/593 (56%), Gaps = 31/593 (5%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94
             Q  + +Y ASSI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +AGY 
Sbjct: 6   NPQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYC 65

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVE--NHPKFP-NKSTLEIILTTLHAGGKFDNSTYEIS 151
           N I V++  +  ++V DNGRGIP +   + K    +S  EI++T LHAGGKFD ++Y++S
Sbjct: 66  NDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQNSYKVS 125

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK-----------EKVR 200
           GGLHGVG+S VNALS  L +TV R       +F RG+    + +                
Sbjct: 126 GGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLEMVDGVEVSPMLVTGDT 185

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
             RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E       
Sbjct: 186 ENRGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD----- 239

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
             F F GG+K +++   + ++ +   +F    EK G     VE A+ W +     +  + 
Sbjct: 240 --FAFAGGVKGFVEFINKTKTNLHPTVFFATGEKDGV---GVEVAMQWNDSYNENVLCFT 294

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + EP
Sbjct: 295 NNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEP 354

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F+ QTK KLVS + +  VE  +    + +L++ PI+A  +   ++E +  R   RK RE
Sbjct: 355 KFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKARE 414

Query: 438 VNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
           + R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+
Sbjct: 415 MTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKV 474

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLL 555
           LNV  A  +K+ +++QI+ LV ALGC    +    + LRY ++IIMTDADVDGAHI +LL
Sbjct: 475 LNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLL 534

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           LTF Y++M D+IE+ ++++  PPL++I  G    Y  D+      +      G
Sbjct: 535 LTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQG 587



 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             +  ++      +  +   R+KGLGEM   QL ET MD   R LLRV+I   +      
Sbjct: 738 DFKSAMKWLLADAERNVSKQRYKGLGEMNPGQLWETTMDPAVRRLLRVQIEDAI----AA 793

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
                 LMG   + R  FI+  A    ++ 
Sbjct: 794 DGIFTTLMGDDVEPRRAFIESNALRAGNID 823


>gi|187735779|ref|YP_001877891.1| DNA gyrase, B subunit [Akkermansia muciniphila ATCC BAA-835]
 gi|187425831|gb|ACD05110.1| DNA gyrase, B subunit [Akkermansia muciniphila ATCC BAA-835]
          Length = 852

 Score =  497 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 225/590 (38%), Positives = 321/590 (54%), Gaps = 24/590 (4%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           + +A   Y A+ I  LEGLE VR RPGMYIG  DE+ LHH   EV+DN++DE +AGY + 
Sbjct: 14  STTAQHEYGAAQIDKLEGLEAVRKRPGMYIGDPDERGLHHCVFEVLDNSIDEHLAGYCSK 73

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I++ +  +G +++VDNGRGIPV+ HPKF     +E++LT LHAGGKF    Y+ SGGLHG
Sbjct: 74  IDIVIHVDGSISIVDNGRGIPVDIHPKF-GIPAVELVLTNLHAGGKFGQGAYKYSGGLHG 132

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKI 215
           VG   VNALSD     V R    +  KF RG  + PL           GT ITF PD  I
Sbjct: 133 VGAKCVNALSDWFKAEVRRDGKRYQIKFERGKTVEPLRTVGSCACEVTGTTITFFPDATI 192

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F D   F   RL    +  A+L+  +      ++E         +E F++  G+  +++ 
Sbjct: 193 FTDTTEFKFDRLTTRLRELAFLNPGLVIELIDERE-----APARRETFFYKDGIVEFVRQ 247

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGT---------VEWAIAWCEENPEI-TSYCNTILTD 325
              N+ +I+ +  +    +K               V+    +          + N+I   
Sbjct: 248 LGTNKEVINEDPISISGVRKVEVEYDGKKMEDDVLVDVVFQYNNTYETNILCFANSIYNG 307

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH SG R ALTR I  YA+      ++  S+  +D+    V ++SV +  P F+ QT
Sbjct: 308 DGGTHLSGFRGALTRVINGYAKANGLLKEKDPSLSGEDVREGLVAVISVKMPNPRFSSQT 367

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443
           K KLV+ + +  V N + +    Y  +NP  A K++E  I  +  R   RK RE  RK+A
Sbjct: 368 KDKLVNTEIEGVVGNVVYEEIKTYFEENPAMAKKIIEKSITAARAREAARKARETVRKSA 427

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADCS       ELFIVEGDSAGGSAK  R+R  QA+LPLRGK+LNV  A 
Sbjct: 428 LSIGGLPGKLADCSDRDPAKCELFIVEGDSAGGSAKMGRDRRTQAILPLRGKVLNVEKAR 487

Query: 504 SEKIRNNQQIMDLVQALGCRT-----RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
            +K   +++I +++ A+G         + ++ + +RY K+IIMTDADVDGAHI +LLLTF
Sbjct: 488 LDKALGSKEIQNMITAIGAGIGEGDDEASFKLDRVRYHKIIIMTDADVDGAHIRTLLLTF 547

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           F + M  L+   +L++   PL+RI +  K  Y  D+    + L E   + 
Sbjct: 548 FCRHMPQLVRAGYLYIAQAPLYRIIRRKKEEYVQDDVALNRKLIELAVND 597



 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 19/125 (15%)

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQK---------ILEEFKKHGKGKIEISRFKGL 620
             +  +  PLF + +G        E  K+K         ILE     GK  +EI+RFKGL
Sbjct: 737 NMIVSMDTPLFELVEG--------EGDKEKVTPLFSVMDILESVISIGKRGVEITRFKGL 788

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GEM A  L +T MD  +R LLRV +N D  +     +    LMG   + R  +I + A  
Sbjct: 789 GEMDAKDLFKTTMDPERRELLRVILNDD--NAVRADEMFTILMGDVVEPRKNYIVDHALN 846

Query: 681 IDDVG 685
           + ++ 
Sbjct: 847 VRNLD 851


>gi|124265196|ref|YP_001019200.1| DNA gyrase subunit B [Methylibium petroleiphilum PM1]
 gi|124257971|gb|ABM92965.1| DNA gyrase subunit B [Methylibium petroleiphilum PM1]
          Length = 851

 Score =  497 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 239/624 (38%), Positives = 341/624 (54%), Gaps = 38/624 (6%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           M+D         P     S    +               AS  Y   SI+ILEGLE VR 
Sbjct: 1   MSDP------KTPQHDAQSGVTQQPVPSAEGHAISVGSDASVAYGEGSIQILEGLEAVRK 54

Query: 61  RPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119
           RPGMYIG T D   LHHL  EV+DN++DE +AG+ + I V++  +  ++V DNGRGIP  
Sbjct: 55  RPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHSDNSISVTDNGRGIPTG 114

Query: 120 N---HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQ 176
                   P +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV R+
Sbjct: 115 VKMDDKHEPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKWLRLTVRRE 174

Query: 177 NTIFSQKFSRGIP------------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
             +   +F RG P            +SP+         RGT + F PD +IF +   F  
Sbjct: 175 GKVHLMEFRRGFPQDRVLEMRNGFEVSPMAIVGDTEK-RGTEVHFLPDEEIFTNI-DFHY 232

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             L K  +  ++L+  VK     ++   E         F + GG+K +++     + ++ 
Sbjct: 233 DVLAKRLRELSFLNNGVKIRLVDERNAKEDN-------FAYAGGVKGFVEFINTGKKVLH 285

Query: 285 SEIFTGKTEK--KGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
             IF    +K  +      VE A+ W +   E    + N I   +GGTH +GLR A+TR 
Sbjct: 286 GNIFHALGDKMSEFNTNIGVEVAMQWNDGYSEQVLCFTNNIPQRDGGTHLTGLRAAMTRV 345

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I KY E  +   K  + I  DD+      ++SV + EP+F+ QTK KLVS + +  VE  
Sbjct: 346 INKYIEDNELAKKAKVEIAGDDMREGLACVVSVKVPEPKFSSQTKDKLVSSEVRGPVEEI 405

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458
           +      YL++NPI+A  +   ++E +  R   RK RE+ R+   +  + LPGKLADC +
Sbjct: 406 VGKLLTDYLLENPIDAKIICGKIVEAARAREAARKAREMTRRKGVLDGMGLPGKLADCQE 465

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  EK+  + +I+ L+ 
Sbjct: 466 KDPALCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVERARFEKLLTSNEILTLIT 525

Query: 519 ALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
           ALG    + +Y  + LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ H+++  P
Sbjct: 526 ALGTSIGKDEYNPDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGHIYIAQP 585

Query: 578 PLFRITQGTKSVYAHDEEHKQKIL 601
           PL+++  G +  Y  D       L
Sbjct: 586 PLYKVKLGKEEQYLKDGHELDAYL 609



 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
              ++ +    +  +  +   R+KGLGEM   QL ET MD   R LLRV+I+  +    +
Sbjct: 764 ADFREAMAWLMQQAENSVGRQRYKGLGEMNPEQLWETTMDPTVRRLLRVQIDDAI----E 819

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
                  LMG + + R  FI+  A    ++ 
Sbjct: 820 ADRVFTMLMGDEVEPRRDFIETNALRAANID 850


>gi|209515895|ref|ZP_03264757.1| DNA gyrase, B subunit [Burkholderia sp. H160]
 gi|209503743|gb|EEA03737.1| DNA gyrase, B subunit [Burkholderia sp. H160]
          Length = 823

 Score =  497 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 233/595 (39%), Positives = 342/595 (57%), Gaps = 33/595 (5%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGY 93
             N    ++Y ASSI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +AG+
Sbjct: 4   MNNTQPDNSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGH 63

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
            N I+V +  +  +++ DNGRG+P          P +S  EI++T LHAGGKFD ++Y++
Sbjct: 64  CNDIQVIIHADNSISITDNGRGVPTGLKMDDKHDPKRSAAEIVMTELHAGGKFDQNSYKV 123

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEK 198
           SGGLHGVG+S VNALS  L +TV R       +F RG+P             SP++    
Sbjct: 124 SGGLHGVGVSCVNALSAWLRLTVRRDGKKHFMEFHRGVPQNRVLEEVNGVTTSPMQVIGD 183

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             N RGT + F  D  IFG+   +    L K  +  ++L+  V+      +   E     
Sbjct: 184 TEN-RGTEVHFMADETIFGNV-EYHYDILAKRIRELSFLNNGVRIRLLDQRSGKE----- 236

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
             E+F F GG+K +++   +N+S++   IF    EK G     VE A+ W +     +  
Sbjct: 237 --EDFAFVGGVKGFVEYINKNKSVLHPNIFHIMGEKDGV---GVEVAMQWNDSYNENVLC 291

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +GLR A+TR + KY    +   K  +    DD+      +LSV + 
Sbjct: 292 FTNNIPQRDGGTHLTGLRAAMTRVLNKYIADHEVAKKAKVETSGDDMREGLSCVLSVKVP 351

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           EP+F+ QTK KLVS + +  VE  +    + +L++ P +A  +   +++ +  R   RK 
Sbjct: 352 EPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPGDAKIICGKIVDAARARDAARKA 411

Query: 436 REVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE+ R+   +  + LPGKLADC +     +E++IVEGDSAGGSAKQ R+R  QA+LPLRG
Sbjct: 412 REMTRRKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRG 471

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIAS 553
           K+LNV  A  +K+ +++QI+ L+ ALGC    +    + LRY ++IIMTDADVDGAHI +
Sbjct: 472 KVLNVEKARYDKLLSSEQIVTLITALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRT 531

Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           LLLTFFY++M ++IE+ ++++  PPL++I  G    Y  DE      +      G
Sbjct: 532 LLLTFFYRQMPEMIERGYIYIAQPPLYKIKAGKDERYLKDESEVNAHILRLALQG 586



 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             +  ++      +  +   R+KGLGEM   QL ET MD   R LLRV+I   +      
Sbjct: 737 DFKSAMKWLLADAERNMSKQRYKGLGEMNPEQLWETTMDPQVRRLLRVQIEDAI----AA 792

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
                 LMG   + R  FI+  A    ++ 
Sbjct: 793 DGIFTTLMGDDVEPRRAFIESNALRAGNID 822


>gi|326386061|ref|ZP_08207685.1| DNA gyrase subunit B [Novosphingobium nitrogenifigens DSM 19370]
 gi|326209286|gb|EGD60079.1| DNA gyrase subunit B [Novosphingobium nitrogenifigens DSM 19370]
          Length = 840

 Score =  497 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 222/586 (37%), Positives = 351/586 (59%), Gaps = 23/586 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANL 96
              +++Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV DNA+DE +AG+ +L
Sbjct: 7   TPNANSYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEALAGHCDL 66

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF----DNSTYEISG 152
           + + ++ +G ++V DNGRGIP + H +    S  E+I+T LHAGGKF    D++ Y++SG
Sbjct: 67  VLIEINPDGSVSVEDNGRGIPTDIHSE-EGVSAAEVIMTQLHAGGKFENTSDDNAYKVSG 125

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-----RNKRGTRI 207
           GLHGVG+SVVNALS+ L +T+ R+      +F+ G P++PL  + +      + K+GTR+
Sbjct: 126 GLHGVGVSVVNALSEWLELTIWREGKEHWMRFAHGDPVAPLIVRGEAPIVGGKPKKGTRV 185

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
           TF    + F +   +D  +L    +  A+L+  V+      +    K       + Y+ G
Sbjct: 186 TFFASHETFKNVTEYDFDKLEHRYRELAFLNSGVRILLRDKRREEVKEH-----DLYYEG 240

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDE 326
           G+  +++    N+  +  +      ++ G     ++ A+ W +     +  + N I   +
Sbjct: 241 GIGAFVKYLDRNKLPLIPDPIAISADRDGI---GIDVALQWNDSYYENVLCFTNNIPQRD 297

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +  R ALTR I  YAE +    K  +++  DD+      I+SV + +P+F+ QTK
Sbjct: 298 GGTHLAAFRAALTRTINGYAERSGLLKKEKVALSGDDMREGLTAIVSVKLPDPKFSSQTK 357

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
            KLVS + ++ +E+ + D  + +L +NP  A  +++ VI+ +  R   RK RE   RK A
Sbjct: 358 DKLVSSEVRQPLESLMADKMNEWLEENPAHARSVIQKVIDAAAAREAARKARELTRRKGA 417

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +      ELF+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A 
Sbjct: 418 MDIASLPGKLADCQERDPSKCELFLVEGDSAGGSAKQGRDRKTQAILPLKGKILNVERAR 477

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            ++I +++++  L+QA+G   R ++  + LRY K++IMTDADVDGAHI +LLLTFF++++
Sbjct: 478 FDRIISSKEVGTLIQAMGTGIRDEFNLDKLRYHKIVIMTDADVDGAHIRTLLLTFFHRQL 537

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK 609
            ++++Q HLF+  PPL+++ +G   VY  D       L E    G+
Sbjct: 538 PEIVKQGHLFIAQPPLYKVAKGRSEVYLKDNAALDNYLVEAGLSGR 583



 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           +++E     G+  + I R+KGLGEM A QL ET +D + R LL+V+I         T + 
Sbjct: 757 QLVEAVFATGRKGLSIQRYKGLGEMNAEQLWETTLDPDNRLLLQVKIED----ADVTDEI 812

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
           + +LMG   + R +FIQE A  + ++ 
Sbjct: 813 LTRLMGDVVEPRREFIQENALNVANLD 839


>gi|301165375|emb|CBW24946.1| DNA gyrase subunit B [Bacteriovorax marinus SJ]
          Length = 817

 Score =  497 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 209/580 (36%), Positives = 327/580 (56%), Gaps = 21/580 (3%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
           ++   +     + YDA  I++LEGLE VR RPGMYIG T  + LHH   E++DNA+DE +
Sbjct: 2   ETENTSISKVGEKYDADQIKVLEGLEAVRKRPGMYIGDTAVRGLHHCVYEIVDNAVDEAL 61

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS--TY 148
           AGY   I++ +  +  +TVVDNGRGIP + HP     S  E++ T LHAGGKF+     Y
Sbjct: 62  AGYCTEIKIIIHVDNSVTVVDNGRGIPTDMHP-TEGCSAAELVYTKLHAGGKFNEDGGAY 120

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK--RGTR 206
           ++SGGLHGVG +VVNALS  + + + +   + + KF RG  ++PL     + +    GT 
Sbjct: 121 KVSGGLHGVGAAVVNALSKWVKMEIKKHGKLHAVKFERGEAVAPLAVIGDLEDPKITGTA 180

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           +TF+PD +IF     F+   L    +  A+L+  +      ++         +K+ F + 
Sbjct: 181 VTFKPDNEIFEV-HEFNYDTLANRFREMAFLNKGLNISLKDERS-------DKKDVFCYE 232

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTD 325
           GG+  ++      ++ +  ++      ++      VE A+ W +   E+ S Y N I T 
Sbjct: 233 GGIAEFVTYLNRAKTAVHKKVIAFSQARED---YEVEVAMQWTDSYSEVLSGYANAICTP 289

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQT 383
            GGTH SG + A+TR +  YA+     +    ++  DD+      I+S+ + E +F GQT
Sbjct: 290 GGGTHISGFKTAITRVLNAYAKDNNLLKGLKSNLTGDDMREGLTAIISIKLPELQFEGQT 349

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKT 442
           K KL + + +  V + + +    YL +NP  A  +++  V   +     R+ +    RK+
Sbjct: 350 KDKLGNSEVEGIVNSLVGEQLKQYLEENPSLAKTIIKKSVDAAAAREAARKARELTRRKS 409

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGK+ADC +     +E++IVEGDSAGGSAKQ R+R  QAVLPL+GKILNV  A
Sbjct: 410 ALVVSGLPGKMADCQEKDPARSEIYIVEGDSAGGSAKQGRDRKTQAVLPLKGKILNVEKA 469

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
             +K+  N +I  +VQA+G    + Q+  + LRY K++IMTDADVDG+HI +L+LT  Y+
Sbjct: 470 RYDKMLANNEIKMIVQAMGTGVGKEQFDIKKLRYHKIVIMTDADVDGSHIRTLILTLLYR 529

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +  +L+E  ++++  PPLF+  +G    Y  DE+  +  L
Sbjct: 530 QFPELVENGYVYIAQPPLFKYKKGKAERYLKDEKELEAFL 569



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
             +  E     GK    I R+KGLGEM   QL ET M+ + RTLL+V I   +    +  
Sbjct: 732 LNEFAEHIIVDGKQGAYIQRYKGLGEMNPEQLWETTMNPDNRTLLQVRIEDTI----EAD 787

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
              + LMG   + R +F++E A  + ++ 
Sbjct: 788 QVFSVLMGDNVEPRRQFVEENALNVRNLD 816


>gi|330814959|ref|YP_004358664.1| DNA gyrase, B subunit [Burkholderia gladioli BSR3]
 gi|327367352|gb|AEA58708.1| DNA gyrase, B subunit [Burkholderia gladioli BSR3]
          Length = 825

 Score =  497 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 236/598 (39%), Positives = 339/598 (56%), Gaps = 33/598 (5%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVI 90
           +    +Q  + +Y ASSI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +
Sbjct: 2   TEQHNSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL 61

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNST 147
           AGY N I V++  +  +++ DNGRGIP +        P +S  EI++T LHAGGKFD ++
Sbjct: 62  AGYCNDIHVTIHADNSISITDNGRGIPTDVKMDDKHEPKRSAAEIVMTELHAGGKFDQNS 121

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEK 195
           Y++SGGLHGVG+S VNALS  L + V R       +F RG+             +SP+  
Sbjct: 122 YKVSGGLHGVGVSCVNALSSWLRLVVKRNGKKHFMEFHRGVAQDRVLETRDGVEVSPMAV 181

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
                N RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E  
Sbjct: 182 TGDTEN-RGTEVHFMADPTIFGTV-EYHYDILAKRIRELSFLNNGVRIRLTDQRSGKEDD 239

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PE 314
                  F F GG+K +++   + +S++   IF    EK G     VE A+ W +     
Sbjct: 240 -------FAFVGGVKGFVEYINKTKSVLHPTIFHIIGEKDGV---GVEVAMQWNDSYNEN 289

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSV 372
           +  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV
Sbjct: 290 VLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIVDNEIAKKAKVETSGDDMREGLSCVLSV 349

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
            + EP+F+ QTK KLVS + +  VE  +    + +L++ P +A  +   ++E +  R   
Sbjct: 350 KVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICSKIVEAARARDAA 409

Query: 433 RKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           RK RE+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LP
Sbjct: 410 RKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILP 469

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAH 550
           LRGK+LNV  A  +K+ +++QI+ LV ALGC    +    E LRY ++IIMTDADVDGAH
Sbjct: 470 LRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLEKLRYHRIIIMTDADVDGAH 529

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           I +LLLTF Y++M ++IE+ ++++  PPLF+I  G    Y  DE      +      G
Sbjct: 530 IRTLLLTFLYRQMPEMIERGYVYIAQPPLFKIKAGKDERYLKDESELNAHMLRLALQG 587



 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G +S    D    +  ++      +  +   R+KGLGEM   QL ET MD N R LL
Sbjct: 728 IKRGERSQAVKD---FKGAMQWLMADAERNVSKQRYKGLGEMNPEQLWETTMDPNVRRLL 784

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           RV+I   +            LMG + + R  FI+  A    ++ 
Sbjct: 785 RVQIEDAI----AADGIFTTLMGDEVEPRRAFIESNALRAGNID 824


>gi|172059070|ref|YP_001806722.1| DNA gyrase subunit B [Burkholderia ambifaria MC40-6]
 gi|171991587|gb|ACB62506.1| DNA gyrase, B subunit [Burkholderia ambifaria MC40-6]
          Length = 824

 Score =  497 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 235/594 (39%), Positives = 339/594 (57%), Gaps = 33/594 (5%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94
            +Q  + +Y ASSI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +AGY 
Sbjct: 6   NSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYC 65

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVE--NHPKFP-NKSTLEIILTTLHAGGKFDNSTYEIS 151
           N I V++  +  ++V DNGRGIP +   + K    +S  EI++T LHAGGKFD ++Y++S
Sbjct: 66  NDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQNSYKVS 125

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKV 199
           GGLHGVG+S VNALS  L +TV R       +F RG+             +SP+      
Sbjct: 126 GGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQERVLEKVDGVEVSPMLVTGDT 185

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            N RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E      
Sbjct: 186 EN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD---- 239

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              F F GG+K +++   + ++ +   IF    EK G     VE A+ W +     +  +
Sbjct: 240 ---FAFAGGVKGFVEYINKTKTNLHPTIFHANGEKDGV---GVEVAMQWNDSYNENVLCF 293

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + E
Sbjct: 294 TNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPE 353

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F+ QTK KLVS + +  VE  +    + +L++ P++A  +   ++E +  R   RK R
Sbjct: 354 PKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPLDAKIICGKIVEAARARDAARKAR 413

Query: 437 EVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK
Sbjct: 414 EMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGK 473

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASL 554
           +LNV  A  +K+ +++QI+ LV ALGC         + LRY ++IIMTDADVDGAHI +L
Sbjct: 474 VLNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTL 533

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           LLTF Y++M D+IE+ ++++  PPL++I  G    Y  D+      +      G
Sbjct: 534 LLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDTELNAHMLRLALQG 587



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             +  ++      +  +   R+KGLGEM   QL ET MD   R LLRV+I   +      
Sbjct: 738 DFKSAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMDPAVRRLLRVQIEDAI----AA 793

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
                 LMG   + R  FI+  A    ++ 
Sbjct: 794 DGIFTTLMGDDVEPRRAFIESNALRAGNID 823


>gi|329891030|ref|ZP_08269373.1| DNA gyrase, B subunit [Brevundimonas diminuta ATCC 11568]
 gi|328846331|gb|EGF95895.1| DNA gyrase, B subunit [Brevundimonas diminuta ATCC 11568]
          Length = 809

 Score =  497 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 228/582 (39%), Positives = 337/582 (57%), Gaps = 23/582 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
               + S  Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+
Sbjct: 2   TEQTAPSPEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGH 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+L+ V+L+ +G +TV DNGRGIP   H +    S  E+I+T LHAGGKFD ++Y++SGG
Sbjct: 62  ADLVTVTLNEDGSVTVTDNGRGIPTAIHAE-EGISAAEVIMTQLHAGGKFDQNSYKVSGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-------RNKRGTR 206
           LHGVG+SVVNALSD L + + R     S +F RG  +  L             R   GT 
Sbjct: 121 LHGVGVSVVNALSDWLELVIYRDGKKHSVRFERGETVRSLAVVGDAPMREDKGRLLTGTE 180

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           +TF P    F     FD   L    +  A+L+  V    S  +        P +   ++ 
Sbjct: 181 VTFFPSVTTFS-HIDFDLKTLEHRLRELAFLNSGVVIKLSDHR-----GAEPIEIMLHYE 234

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG++ +++   ++++ I  ++   + +K G     ++ A+ W +     +  + N I   
Sbjct: 235 GGVEAFVRHLDKSKTPILKDVIVIRGQKDGI---ELDLALWWNDSYHETMLCFTNNIPQR 291

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH S  R +LTR +  Y E +    K  ++   +D       +LSV + +P+F+ QT
Sbjct: 292 DGGTHLSAFRASLTRVMGSYIESSGLAKKEKVAPTGEDAREGLTCVLSVKVPDPKFSSQT 351

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKT 442
           K KLVS + +  VE+   +    +  ++P+EA  ++  +IE +  R   RK R+   RK+
Sbjct: 352 KDKLVSSEVRPAVESLCSEGLATWFEEHPVEAKMIVSKIIEAASAREAARKARDLTRRKS 411

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +ELFIVEGDSAGGSAKQARNR NQAVLPLRGKILNV  A
Sbjct: 412 ALEISSLPGKLADCQERDPAKSELFIVEGDSAGGSAKQARNRENQAVLPLRGKILNVERA 471

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
             +++ ++  I  L+ ALG          + LRY K+I+M DADVDGAHI +LLLTFFY+
Sbjct: 472 RFDRMLSSDLIGTLILALGTGIGRDDFNADKLRYHKIILMADADVDGAHIRTLLLTFFYR 531

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEE 603
           +M +LIE+ H+++  PPL+++++G +  Y  D+      L E
Sbjct: 532 QMPELIERGHVYIAQPPLYKVSKGKQHRYVKDQAEMDAYLIE 573



 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 35/83 (42%), Positives = 44/83 (53%), Gaps = 4/83 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L      GK  I I R+KGLGEM   QL ET +DAN RTLL+V++        D  D 
Sbjct: 727 DLLAAVLDAGKKGIAIQRYKGLGEMNPEQLWETTLDANARTLLQVKVEHG----DDADDL 782

Query: 659 INKLMGTKADERFKFIQERASFI 681
             KLMG   + R +FIQ+ A   
Sbjct: 783 FAKLMGDVVEPRREFIQDNALDA 805


>gi|332108198|gb|EGJ09422.1| DNA gyrase subunit B [Rubrivivax benzoatilyticus JA2]
          Length = 829

 Score =  497 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 232/597 (38%), Positives = 343/597 (57%), Gaps = 30/597 (5%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAG 92
           + +NQ+  ++Y ASSI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +AG
Sbjct: 2   SDSNQTPPNDYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAG 61

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
           Y + I V++  +  ++V DNGRGIP          P +S  EI LT LHAGGKF+ ++Y+
Sbjct: 62  YCDDIVVTIHSDNSISVTDNGRGIPTGVKMDDKHEPRRSAAEIALTELHAGGKFNQNSYK 121

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL-----------SPLEKKEK 198
           +SGGLHGVG+S VNALS  L +TV R   +   +F RG+             +   K   
Sbjct: 122 VSGGLHGVGVSCVNALSKWLRLTVRRDGKVHRVEFKRGVTQDRVIEVRDGVETSPMKIVG 181

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +KRGT + F PD +IF     F    L K  +  ++L+  VK     ++   E     
Sbjct: 182 DTDKRGTEVHFLPDDEIFS-HVDFHYDVLAKRLRELSFLNNGVKIRLVDERNAKEDN--- 237

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK--KGTHRGTVEWAIAWCEEN-PEI 315
               F F GG+K +++   + + ++   +F    EK  +      VE A+ W +     +
Sbjct: 238 ----FAFAGGVKGFVEFINQGKKVLHPNVFHAMGEKASEQGTTIGVEVAMQWNDSYSESV 293

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +GLR A+TR I KY E  +   K  + +  DD+      ++SV 
Sbjct: 294 LCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEDNELAKKAKVEVAGDDMREGLACVVSVK 353

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + EP+F+ QTK KLVS + +  VE+ +      +L++NP +A  +   +++ +  R   R
Sbjct: 354 VPEPKFSSQTKDKLVSSEVRAPVEDIVGRLLTDWLLENPNDAKIICGKIVDAARAREAAR 413

Query: 434 KQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           K RE+ R+   +  + LPGKLADC +      EL++VEGDSAGGSAKQ R+R  QA+LPL
Sbjct: 414 KAREMTRRKGVLDGIGLPGKLADCQEKDPALCELYLVEGDSAGGSAKQGRDRKFQAILPL 473

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHI 551
           RGKILNV  A  EK+ ++  I+ L+ ALG     +    + LRY ++I+MTDADVDGAHI
Sbjct: 474 RGKILNVEKARYEKLLSSDAIVTLITALGTGIGPEDFNVDKLRYHRIIVMTDADVDGAHI 533

Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
            +LLLTFFY++M++L+E+ ++++  PPL+++ QG    Y  D +     L +    G
Sbjct: 534 RTLLLTFFYRQMHELVERGYIYIAQPPLYKVKQGKHEQYLKDGQELDAFLLKVALDG 590



 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 4/91 (4%)

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
              +  ++      +G +   R+KGLGEM   QL ET MD N R LLRV+I   +    +
Sbjct: 742 ADFRAAMDWLMVQAEGAVARQRYKGLGEMNPEQLWETTMDPNVRRLLRVQIEDAI----E 797

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
                  LMG + + R +FI+  A    ++ 
Sbjct: 798 ADRVFTMLMGDEVEPRREFIESNALRAGNID 828


>gi|206889996|ref|YP_002247871.1| DNA gyrase, B subunit [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741934|gb|ACI20991.1| DNA gyrase, B subunit [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 759

 Score =  497 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 242/585 (41%), Positives = 344/585 (58%), Gaps = 18/585 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
               +  ++Y A  I+IL+GLE VR RP MYIG T  + LHHL  EV+DN++DE +AG+ 
Sbjct: 11  GGKVNKEESYKAEHIKILKGLEGVRTRPAMYIGSTGVEGLHHLVYEVVDNSVDEALAGFC 70

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKF-PNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           N IEV L  +G  +V+DNGRGIP E HP     ++ LEI+LT LHAGGKF++  Y++SGG
Sbjct: 71  NKIEVRLHTDGSCSVIDNGRGIPTEIHPDDPEKRTALEIVLTELHAGGKFESKAYKVSGG 130

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS+ L V V R   +  QK+ RGIP++ +E   +     GT+I F+ DP
Sbjct: 131 LHGVGLSVVNALSEWLEVEVQRDGKVVRQKYCRGIPVTGVEVIGQTEK-TGTKIKFKADP 189

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IF     F    L    +  +YL+  +K     +++          EEF   GG+ +++
Sbjct: 190 EIFEV-TEFSREILAHRFKELSYLNRGLKIILIDERD-------GYVEEFIKEGGIVSFV 241

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   + +  +  +      +K    R  VE AI + E    EI ++ N I T EGGTH  
Sbjct: 242 EDLNKGKKPLHPKPIYITGQKD---RVIVEIAIQYNEGYSEEILTFVNNINTKEGGTHLV 298

Query: 333 GLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G + ALTR I  YA L    +        +D+    VG++SV I EP+F GQTK KL + 
Sbjct: 299 GFKSALTRTINSYAMLNGLLKEGKESLSGEDVREGIVGVISVKIPEPQFEGQTKMKLGNS 358

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           + +  VE  L +    +L +NP  A +++E   + +  R   +K +E   RK  +    L
Sbjct: 359 EVKGIVETILNEKLSRWLEENPNYAKRIIEKAKDAARAREAAKKAKELTRRKGILEDTTL 418

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC++      ELFIVEGDSAGGSAKQAR+R +QAVLPLRGKILNV  A  +K+  
Sbjct: 419 PGKLADCTEKDPSHAELFIVEGDSAGGSAKQARDRRSQAVLPLRGKILNVEKARIDKMLT 478

Query: 510 NQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +++I  L+ A+G     ++   E++RY K+I+MTDADVDGAHI +LLLTFFY++M  LIE
Sbjct: 479 SEEIKTLITAIGGGIGKEHFEPENVRYHKIILMTDADVDGAHIRTLLLTFFYRQMLPLIE 538

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613
           + +L++  PPL+RI +G    Y   E+   + L +        IE
Sbjct: 539 KGYLYIAQPPLYRIKRGKWERYIQTEDEFHEFLMDIAVDEISFIE 583



 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 7/106 (6%)

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           + I   T++V         ++  +     K  + I R+KGLGEM   QL ET MD  KRT
Sbjct: 660 YIIRIKTEAVKTKS---LWELYNKVMDAVKKGLTIQRYKGLGEMNPEQLWETTMDPEKRT 716

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           LL+V +       +   +    LMG + + R +FI   A  + ++ 
Sbjct: 717 LLQVTVED----AQRANEIFTILMGDEVEPRKEFIVRHALEVRNLD 758


>gi|154250463|ref|YP_001411287.1| DNA gyrase subunit B [Parvibaculum lavamentivorans DS-1]
 gi|154154413|gb|ABS61630.1| DNA gyrase, B subunit [Parvibaculum lavamentivorans DS-1]
          Length = 814

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 245/580 (42%), Positives = 347/580 (59%), Gaps = 22/580 (3%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAG 92
                   + Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG
Sbjct: 2   TTPADDTPEEYGAESIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNSIDEALAG 61

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           Y + + V L+ +G +TV+DNGRGIPVE H K    S  E+I+T LHAGGKFD ++Y++SG
Sbjct: 62  YCDAVNVRLNADGSVTVMDNGRGIPVEIH-KGEGVSAAEVIMTQLHAGGKFDQNSYKVSG 120

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------RNKRGTR 206
           GLHGVG+SVVNALSD L + + R       +F  G+P +PLE           +   GT 
Sbjct: 121 GLHGVGVSVVNALSDWLEMRIWRAGKEHRIRFQHGVPDAPLEATGPAPIGADGKPVTGTE 180

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           ITF P  + F     FD A L    +  A+L+  VK   +  +        P++ +  + 
Sbjct: 181 ITFHPSSETFTQT-EFDFATLEHRLRELAFLNSGVKINLTDHR-----GVEPKEVKLMYE 234

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTD 325
           GGL+ +++     ++ +  +    + E++G    TVE A+ W +   E    + N I   
Sbjct: 235 GGLEAFVRFLDRTKAPLIQKPIAIRAEREGI---TVEVAMWWNDSYHENVLCFTNNIPQR 291

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R ALTR I  YA  +    K  +S+  DD       +LSV + +P+F+ QT
Sbjct: 292 DGGTHLAGFRGALTRVINSYANESGIAKKEKVSLTGDDAREGLTCVLSVKVPDPKFSSQT 351

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKT 442
           K KLVS + +  VE  + D    +L ++P EA +++  V+E +  R   RK RE   RK 
Sbjct: 352 KDKLVSSEVRPVVEGLVNDALSTWLEEHPAEARQVVTKVVEAAAAREAARKARELTRRKG 411

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +ELFIVEGDSAGGSAKQAR+RSNQAVLPLRGKILNV  A
Sbjct: 412 ALDVSSLPGKLADCQERDPAKSELFIVEGDSAGGSAKQARDRSNQAVLPLRGKILNVERA 471

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
             +K+ ++ +I  L+ ALG    R  +  + LRY K+IIMTDADVDGAHI +LLLTFFY+
Sbjct: 472 RFDKMLSSNEIGTLITALGAGIGRDDFNIDKLRYHKIIIMTDADVDGAHIRTLLLTFFYR 531

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +M ++IE+ HL++  PPL+++ +GT   Y  +E+     L
Sbjct: 532 QMPEVIERGHLYIAQPPLYKVRRGTSETYLKNEKALGDYL 571



 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           ++L+     G     + R+KGLGEM   QL ET +D + R+LL+V+I      L D  D 
Sbjct: 731 QLLDAVMAAGTKGNTVQRYKGLGEMNPGQLWETTLDRDARSLLQVKI----RELDDADDL 786

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R  FI+E A  + ++ 
Sbjct: 787 FVKLMGDVVEPRRDFIRENALNVANLD 813


>gi|56477036|ref|YP_158625.1| DNA gyrase subunit B [Aromatoleum aromaticum EbN1]
 gi|56313079|emb|CAI07724.1| DNA gyrase (Subunit B) [Aromatoleum aromaticum EbN1]
          Length = 831

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 235/594 (39%), Positives = 343/594 (57%), Gaps = 36/594 (6%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           D YD SSI+ LEGLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ + I ++
Sbjct: 14  DAYDESSIQQLEGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEALAGHCDDIVIT 73

Query: 101 LDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +  +  ++V DNGRGIPV         P +S  EI++  LHAGGKF+ ++Y++SGGLHGV
Sbjct: 74  IHADNSISVADNGRGIPVGVKMDDKHEPKRSAAEIVMCVLHAGGKFNQNSYKVSGGLHGV 133

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKVRNKRGT 205
           G+S VNALS  LH+TVAR       +F  G+P            +SP+    +    RGT
Sbjct: 134 GVSCVNALSKWLHLTVARDGKKHFIEFHHGVPQNRVIELVDGVEVSPMRITGETTK-RGT 192

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           R+ +  D +IFG    +    L K  +  ++L+  VK      +   E       E+F F
Sbjct: 193 RVHYLADEEIFGTV-EYHYEILAKRLRELSFLNNGVKIRLVDQRSGKE-------EDFAF 244

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKG------THRGTVEWAIAWCEEN-PEITSY 318
            GG+K +++     +S++   +F      +            VE A+ W +    ++  Y
Sbjct: 245 AGGVKGFVEYINRTKSVLHPTVFYAAGTTRIPTGHGHDAELGVEVAMQWNDSYAEQVLCY 304

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +GLR A+TR I KY E  +   K  + I  DD+      +LSV + +
Sbjct: 305 TNNIPQADGGTHLTGLRAAMTRIINKYIEEHEIAKKAKVDITGDDMREGLACVLSVKMPD 364

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+FA QTK KLVS +A+  VE  + +    +L +NP++A  +   ++E +  R   RK R
Sbjct: 365 PKFASQTKMKLVSSEARPAVEEVVANKLTDFLQENPLDAKTICAKIVEAARARDAARKAR 424

Query: 437 EVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E+ R+  +   + LPGKLADC +      E+++VEGDSAGGSAKQ R+R  QA+LPL+GK
Sbjct: 425 EMTRRKGLLDGVGLPGKLADCQEKDPALCEIYLVEGDSAGGSAKQGRDRKFQAILPLKGK 484

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           ILNV  A  +K+  +Q+I  ++ ALG    +  Y+ E LRY ++IIMTDADVDGAHI +L
Sbjct: 485 ILNVEKARFDKLLQSQEIATMITALGTGIGKDDYKPEKLRYHRIIIMTDADVDGAHIRTL 544

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           LLTFFY++M +L+E+ H+++  PPL++I  G   +Y  DE    + L +    G
Sbjct: 545 LLTFFYRQMPELVERGHIYIAQPPLYKIKHGKNEMYIKDENALNQHLLKLALDG 598



 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G KS          + +       +  +   R+KGLGEM   QL ET MD   R LL
Sbjct: 734 IRRGEKSH---PITRFSEAIRWLLGEVERGLTKQRYKGLGEMNPEQLWETTMDPAVRRLL 790

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V+I+  +       +    LMG   + R  FI+  A +  ++ 
Sbjct: 791 KVQIDDAI----AADEIFTTLMGDNVEPRRAFIEGNALYARNID 830


>gi|163797313|ref|ZP_02191266.1| Type IIA topoisomerase [alpha proteobacterium BAL199]
 gi|159177404|gb|EDP61960.1| Type IIA topoisomerase [alpha proteobacterium BAL199]
          Length = 815

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 224/586 (38%), Positives = 341/586 (58%), Gaps = 18/586 (3%)

Query: 29  IPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMD 87
             ++        S+ YDA SI++L GL+ VR RPGMYIG TD+   LHH+  EV+DNA+D
Sbjct: 2   ADETLPENGNGGSNGYDADSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAID 61

Query: 88  EVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST 147
           E +AGY + + V+L+G+G +TV DNGRGIPV+ H +    S  ++I+T LHAGGKFD ++
Sbjct: 62  EALAGYCDAVMVTLNGDGSVTVSDNGRGIPVDMHSE-EGMSAAQVIMTQLHAGGKFDQNS 120

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS+ L + + R       +F  G+P + L        + GT +
Sbjct: 121 YKVSGGLHGVGVSVVNALSEILDLRIWRDGKEHFMRFRHGVPEADLVVVGPAP-QTGTEV 179

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
           TF+P    F     FD   L    +  A+L+  V+   + D+    K       + ++ G
Sbjct: 180 TFKPSKATFT-MVDFDLPTLEHRLRELAFLNSGVRILLTDDRTAESKT-----VDLHYEG 233

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           GL+ ++      R  +   +     E+ G    TVE A+ W +     +  + N I   +
Sbjct: 234 GLQAFVTYLDRARHPLHPTLMM-SGERDG---MTVEVAMEWTDSYHETMLCFTNNIPQKD 289

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GG H +G R ALTR +  YA+ +    K  +++  DD       +LSV + +P+F+ QTK
Sbjct: 290 GGAHLAGFRAALTRQVNSYAQSSGIAKKEKVTLSGDDAREGLTCVLSVKVPDPKFSSQTK 349

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA- 443
            KLVS + +  VEN + D    +  ++P +A +++    E +  R   R+ R++ R+   
Sbjct: 350 DKLVSSEVKPVVENIVADKLQQWFEEHPADAKRVVAKAYEAAAAREAARRARDLTRRKGV 409

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +      ELF+VEGDSAGGSAKQ R+R +QA+LPLRGKILNV  A 
Sbjct: 410 LDIANLPGKLADCQERDPAKAELFLVEGDSAGGSAKQGRHRKSQAILPLRGKILNVERAR 469

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
            +K+  +Q+I  L+ ALG      ++    LRY ++IIMTDADVDG+HI +LLLTFF+++
Sbjct: 470 FDKMLASQEIGTLIAALGTSIGPEEFDITKLRYHRIIIMTDADVDGSHIRTLLLTFFFRQ 529

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           M +L+E+ +L++  PPL+R+ +G +  Y  D+   ++ L +    G
Sbjct: 530 MPELLERGYLYIAQPPLYRVKRGNEETYLKDDRALERFLIDEGTKG 575



 Score =  126 bits (317), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 4/86 (4%)

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
           ++E     G+  + ++R+KGLGEM   QL ET +D ++RTLL+V++        + Q+  
Sbjct: 733 LIEAVFAIGRKGLTVNRYKGLGEMNPGQLWETTLDPDRRTLLQVKVAH----ADEAQEVF 788

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
           + LMG   + R +FIQ  A  + ++ 
Sbjct: 789 STLMGDVVEPRREFIQTNALKVANLD 814


>gi|115350059|ref|YP_771898.1| DNA gyrase subunit B [Burkholderia ambifaria AMMD]
 gi|115280047|gb|ABI85564.1| DNA gyrase subunit B [Burkholderia ambifaria AMMD]
          Length = 824

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 235/594 (39%), Positives = 339/594 (57%), Gaps = 33/594 (5%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94
            +Q  + +Y ASSI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +AGY 
Sbjct: 6   NSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYC 65

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVE--NHPKFP-NKSTLEIILTTLHAGGKFDNSTYEIS 151
           N I V++  +  ++V DNGRGIP +   + K    +S  EI++T LHAGGKFD ++Y++S
Sbjct: 66  NDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQNSYKVS 125

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKV 199
           GGLHGVG+S VNALS  L +TV R       +F RG+             +SP+      
Sbjct: 126 GGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQERVLEKVDGVEVSPMLVTGDT 185

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            N RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E      
Sbjct: 186 EN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD---- 239

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              F F GG+K +++   + ++ +   IF    EK G     VE A+ W +     +  +
Sbjct: 240 ---FAFAGGVKGFVEYINKTKTNLHPTIFHANGEKDGV---GVEVAMQWNDSYNENVLCF 293

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + E
Sbjct: 294 TNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPE 353

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F+ QTK KLVS + +  VE  +    + +L++ P++A  +   ++E +  R   RK R
Sbjct: 354 PKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPLDAKIICGKIVEAARARDAARKAR 413

Query: 437 EVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK
Sbjct: 414 EMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGK 473

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASL 554
           +LNV  A  +K+ +++QI+ LV ALGC         + LRY ++IIMTDADVDGAHI +L
Sbjct: 474 VLNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTL 533

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           LLTF Y++M D+IE+ ++++  PPL++I  G    Y  D+      +      G
Sbjct: 534 LLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDTELNAHMLRLALQG 587



 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             +  ++      +  +   R+KGLGEM   QL ET MD   R LLRV+I   +      
Sbjct: 738 DFKSAMKWLLADAERNVSKQRYKGLGEMNPGQLWETTMDPAVRRLLRVQIEDAI----AA 793

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
                 LMG + + R  FI+  A    ++ 
Sbjct: 794 DGIFTTLMGDEVEPRRAFIESNALRAGNID 823


>gi|56475776|ref|YP_157365.1| DNA topoisomerase IV subunit B [Aromatoleum aromaticum EbN1]
 gi|56311819|emb|CAI06464.1| Topoisomerase IV subunit B (EC 5.99.1.-) [Aromatoleum aromaticum
           EbN1]
          Length = 658

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 241/663 (36%), Positives = 342/663 (51%), Gaps = 28/663 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +   +YD SS R+L+GLEPVR RPGMY   T   +  H+  EVIDNA DE + G+A  I 
Sbjct: 2   TGKQHYDESSFRVLKGLEPVRERPGMY---TRTDSPAHIIQEVIDNAADEALGGFAKKIH 58

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD----NSTYEISGGL 154
           V+L  +G ++V D+GRGIPV  HP       + +  T LHAGGKFD    N  Y  SGGL
Sbjct: 59  VTLHLDGSISVADDGRGIPVGLHP-DERVPVVVLAFTRLHAGGKFDKRDGNGAYAFSGGL 117

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDP 213
           HGVG++V NALS  + V V R+  I   +FS  G  +  +        + GTR+   PD 
Sbjct: 118 HGVGVAVTNALSTRVEVEVRREGKIHRIEFSDGGEKVGAITVAGDCGRQSGTRVRVWPDA 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F          L ++ +SKA L   V      ++                 G L+   
Sbjct: 178 KYFEAPRVPQGE-LERLLRSKAVLLPGVSVRLDIEQAGGAALTKTWTYPEGLAGYLREQA 236

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESG 333
                   L + E + GK +          WA+AW E      S+ N I T  GGTHESG
Sbjct: 237 GDIEAVAPLYTGEKYAGKDDPAYAPGEGAAWALAWFEHTVPSESFVNLIPTVAGGTHESG 296

Query: 334 LRVALTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           LR  +   +K + E      R + +  +D+      +LS  + +P+F GQ K KL S +A
Sbjct: 297 LRAGVFDAVKSFIEHHALLPRGVKLQQEDVCGRMSFVLSARLLDPQFQGQVKEKLNSREA 356

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
            + V + +RDPF+ +L  +      + E  I ++  R +  ++ E  + + +  L  PGK
Sbjct: 357 VKLVSSMIRDPFEIWLNNHVEAGRAIAELSIRQALARQKSAQKVEKRKTSGVAVL--PGK 414

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L+DC        ELF+VEGDSAGGSAK ARN+  QA+LPLRGK+ N      +++  N +
Sbjct: 415 LSDCESEDLADNELFLVEGDSAGGSAKMARNKETQAILPLRGKVQNSWEIDPDRLLANAE 474

Query: 513 IMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           I D+  ALG    +     D   LRY KV+IM+DADVDGAHI +LLLT F++   +LI +
Sbjct: 475 IHDIAVALGVDAHAAGSTPDLSGLRYGKVVIMSDADVDGAHIQTLLLTLFFRHFPELIAR 534

Query: 570 KHLFLISPPLFRIT---QGTK----SVYAHDEEHKQKILEEFKKHG--KGKIEISRFKGL 620
            H+ +  PPL+R+    QG K     +YA D+     I +  +K G     IE+ RFKGL
Sbjct: 535 GHIHVAQPPLYRVDVPAQGKKRPARRLYALDDGELAAIRDRLEKEGFKPDAIEVGRFKGL 594

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQERAS 679
           GEM   QL+ET MD   R +L VE+    ++L DT      LMG  +A  R  +++ +  
Sbjct: 595 GEMNPDQLRETTMDPATRRVLPVEV--RADALDDTLKMFTLLMGKGEASGRRAWMEAKGD 652

Query: 680 FID 682
            ++
Sbjct: 653 SVE 655


>gi|206558823|ref|YP_002229583.1| DNA gyrase subunit B [Burkholderia cenocepacia J2315]
 gi|198034860|emb|CAR50732.1| DNA gyrase subunit B [Burkholderia cenocepacia J2315]
          Length = 824

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 236/594 (39%), Positives = 340/594 (57%), Gaps = 33/594 (5%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94
            +Q  + +Y ASSI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +AGY 
Sbjct: 6   NSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYC 65

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVE--NHPKFP-NKSTLEIILTTLHAGGKFDNSTYEIS 151
           N I V++  +  ++V DNGRGIP +   + K    +S  EI++T LHAGGKFD ++Y++S
Sbjct: 66  NDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQNSYKVS 125

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKV 199
           GGLHGVG+S VNALS  L +TV R       +F RG+             +SP+      
Sbjct: 126 GGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVIEVVDGVEVSPMLVTGDT 185

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            N RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E      
Sbjct: 186 EN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD---- 239

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              F F GG+K +++   + +S +   +F    EK G     VE A+ W +     +  +
Sbjct: 240 ---FAFAGGVKGFVEFINKTKSTLHPTVFFANGEKDGV---GVEVAMQWNDSYNENVLCF 293

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + E
Sbjct: 294 TNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPE 353

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F+ QTK KLVS + +  VE  +    + +L++ PI+A  +   ++E +  R   RK R
Sbjct: 354 PKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAR 413

Query: 437 EVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK
Sbjct: 414 EMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGK 473

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASL 554
           +LNV  A  +K+ +++QI+ LV ALGC    +    + LRY ++IIMTDADVDGAHI +L
Sbjct: 474 VLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTL 533

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           LLTF Y++M D+IE+ ++++  PPL++I  G    Y  D+      +      G
Sbjct: 534 LLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQG 587



 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
              +  ++      +  +   R+KGLGEM   QL ET MD   R LLRV+I   +     
Sbjct: 737 ADFKSAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMDPAVRRLLRVQIEDAI----A 792

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
                  LMG   + R  FI+  A    ++ 
Sbjct: 793 ADGIFTTLMGDDVEPRRAFIESNALRAGNID 823


>gi|170697756|ref|ZP_02888843.1| DNA gyrase, B subunit [Burkholderia ambifaria IOP40-10]
 gi|170137371|gb|EDT05612.1| DNA gyrase, B subunit [Burkholderia ambifaria IOP40-10]
          Length = 824

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 235/594 (39%), Positives = 339/594 (57%), Gaps = 33/594 (5%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94
            +Q  + +Y ASSI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +AGY 
Sbjct: 6   NSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYC 65

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVE--NHPKFP-NKSTLEIILTTLHAGGKFDNSTYEIS 151
           N I V++  +  ++V DNGRGIP +   + K    +S  EI++T LHAGGKFD ++Y++S
Sbjct: 66  NDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQNSYKVS 125

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKV 199
           GGLHGVG+S VNALS  L +TV R       +F RG+             +SP+      
Sbjct: 126 GGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQERVLEKVDGVEVSPMLVTGDT 185

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            N RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E      
Sbjct: 186 EN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD---- 239

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              F F GG+K +++   + ++ +   IF    EK G     VE A+ W +     +  +
Sbjct: 240 ---FAFAGGVKGFVEYINKTKTNLHPTIFHANGEKDGV---GVEVAMQWNDSYNENVLCF 293

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + E
Sbjct: 294 TNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPE 353

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F+ QTK KLVS + +  VE  +    + +L++ P++A  +   ++E +  R   RK R
Sbjct: 354 PKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPLDAKIICGKIVEAARARDAARKAR 413

Query: 437 EVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK
Sbjct: 414 EMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGK 473

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASL 554
           +LNV  A  +K+ +++QI+ LV ALGC         + LRY ++IIMTDADVDGAHI +L
Sbjct: 474 VLNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTL 533

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           LLTF Y++M D+IE+ ++++  PPL++I  G    Y  D+      +      G
Sbjct: 534 LLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDTELNAHMLRLALQG 587



 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             +  ++      +  +   R+KGLGEM   QL ET MD   R LLRV+I   +      
Sbjct: 738 DFKSAMKWLLADAERNVSKQRYKGLGEMNPGQLWETTMDPAVRRLLRVQIEDAI----AA 793

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
                 LMG + + R  FI+  A    ++ 
Sbjct: 794 DGIFTTLMGDEVEPRRAFIESNALRAGNID 823


>gi|119475239|ref|ZP_01615592.1| DNA gyrase subunit B [marine gamma proteobacterium HTCC2143]
 gi|119451442|gb|EAW32675.1| DNA gyrase subunit B [marine gamma proteobacterium HTCC2143]
          Length = 804

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 227/570 (39%), Positives = 335/570 (58%), Gaps = 20/570 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANL 96
             + ++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ ++
Sbjct: 2   TDSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSI 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V +  +  ++V D+GRGIP E H      S  E+I+T LHAGGKFD++TY++SGGLHG
Sbjct: 62  IRVVIHPDESVSVSDDGRGIPTEMHE--EGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHG 119

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+SVVNALS+EL +T+ R   +F Q +  G+P  PL          GT + F+P    F
Sbjct: 120 VGVSVVNALSEELKLTIRRGGKLFEQVYKHGVPQKPLAVVGDA-ETSGTELRFKPSSGTF 178

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   F   +L K  +  A+L+  V      ++         + E F++ GGL  ++   
Sbjct: 179 TNI-QFHFDQLAKRLRELAFLNSGVNIELKDERS-------GKAETFFYEGGLSEFVSYL 230

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
             N++ I+           G     VE A+ W +     I  Y N I   +GGTH +G R
Sbjct: 231 NTNKTPINKLFHFNIM---GEGDVGVEVALQWNDSFQEGIFCYTNNIPQRDGGTHLAGFR 287

Query: 336 VALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR +  Y E     +        DD       ++SV + +P+F+ QTK KLVS + +
Sbjct: 288 AALTRSLNAYIEREGLAKRAKVSTSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVK 347

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGK 452
             VE A+   F  YL++NP EA  ++  +I+ +  R   RK      RK A+    LPGK
Sbjct: 348 TIVEQAMNQAFGDYLLENPGEAKLVVTKMIDAARAREAARKARDMTRRKGALDIAGLPGK 407

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +     +E+++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ +
Sbjct: 408 LADCQEKDPALSEVYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSVE 467

Query: 513 IMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +  +V+ALGC         + LRY  +IIMTDADVDG+HI +LLLTFF+++M +LIE+ H
Sbjct: 468 VGTIVKALGCGIGRSEFNADKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGH 527

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +F+  PPL++I +G +  Y  DE+ K+  L
Sbjct: 528 IFIAQPPLYKINRGKQQQYIKDEDGKEAYL 557



 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G K+            ++      +  + I R+KGLGEM   QL ET MD + R +L
Sbjct: 707 IQRGEKTEEI---NDFGDAIDWLMIQAERGLSIQRYKGLGEMNPDQLWETTMDPDVRRML 763

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           RV I   +            LMG + + R +FI+E A  + ++ 
Sbjct: 764 RVTIEDAIT----ADQIFTTLMGDQVEPRREFIEENALKVANLD 803


>gi|323699691|ref|ZP_08111603.1| DNA gyrase, B subunit [Desulfovibrio sp. ND132]
 gi|323459623|gb|EGB15488.1| DNA gyrase, B subunit [Desulfovibrio desulfuricans ND132]
          Length = 799

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 232/571 (40%), Positives = 330/571 (57%), Gaps = 19/571 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           +   Y+A SI +LEGLE VR RP MYIG TD + LHHL  EVIDN++DE +AGY + I+V
Sbjct: 2   SEKQYNAESITVLEGLEAVRKRPAMYIGSTDIRGLHHLVYEVIDNSIDEAMAGYCDKIKV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +   TV DNGRGIPV+ HPK      +++ +TTLHAGGKFDN +Y++SGGLHGVG+
Sbjct: 62  TLHMDNSCTVTDNGRGIPVDIHPK-EKIPAVQVAMTTLHAGGKFDNDSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           S VNALS+ +  TV R    +  KF RG  +  LE+     +  GT   FRPD  IF   
Sbjct: 121 SCVNALSEFMETTVKRDGKTWRMKFERGHVVKGLEEVGPA-DSTGTSQRFRPDEDIFEV- 178

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             FD   L K  +  AYL+  ++  +  ++         + E F F GG+K Y++    N
Sbjct: 179 NQFDYDVLRKRFKELAYLNSGLEIEFKDER-----NPESKPEIFKFTGGIKQYVKDINSN 233

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
            + I  EI  G+ E +      VE+A+ +         ++ N I T EGGTH +G + AL
Sbjct: 234 LTTIG-EIVYGEGESEN---MLVEFALQYTASYKENTYTFANNIRTIEGGTHLAGYKTAL 289

Query: 339 TRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR I  Y +     + +   +  DD+      ++SV +  P+F GQTKTKL + +A   V
Sbjct: 290 TRAINSYIQSADLPKKLIQKLTGDDVREGLTSVISVKLPNPQFEGQTKTKLGNSEAAGLV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
              + D  + +  +NP EA  ++E V++ +  R   RK R+ V RK A+    LPGKLAD
Sbjct: 350 AGVIYDKLNTFFEENPKEARFIIEKVVDAARAREAARKARDLVRRKGALSDNALPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C       +E+F+VEGDSAGGSAKQ R+   QA+LPLRGKILNV     +K+  N++I  
Sbjct: 410 CQSKSPEDSEIFLVEGDSAGGSAKQGRDPKIQAILPLRGKILNVEKTRLDKMLGNKEIRA 469

Query: 516 LVQALGCRTRSQY---REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           ++ A G     +        LRY K++IMTDADVDG+HI +LLLTFF+++  +LI + H+
Sbjct: 470 MITAFGIGIGHEEDEKDYSKLRYHKIVIMTDADVDGSHIRTLLLTFFFRQYEELINRGHI 529

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEE 603
           ++  PPL+R ++G    +  D+      L E
Sbjct: 530 YIAQPPLYRASKGKFERFIKDDVELDNFLLE 560



 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 8/89 (8%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
              ++EE  +       I R+KGLGEM   QL ET M+   RT+LRV I           
Sbjct: 718 YDAVIEEAHR----GWSIQRYKGLGEMNPEQLWETTMNPENRTMLRVTIED----AAAAN 769

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           D    LMG   + R +FI++ A  + ++ 
Sbjct: 770 DIFVDLMGDNVEPRREFIEKNALAVQELD 798


>gi|295675104|ref|YP_003603628.1| DNA gyrase, B subunit [Burkholderia sp. CCGE1002]
 gi|295434947|gb|ADG14117.1| DNA gyrase, B subunit [Burkholderia sp. CCGE1002]
          Length = 823

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 233/595 (39%), Positives = 341/595 (57%), Gaps = 33/595 (5%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGY 93
             N    ++Y ASSI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +AG+
Sbjct: 4   MNNTQPDNSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGH 63

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
            N I+V +  +  +++ DNGRG+P          P +S  EI++T LHAGGKFD ++Y++
Sbjct: 64  CNDIQVIIHADNSVSITDNGRGVPTGLKMDDKHDPKRSAAEIVMTELHAGGKFDQNSYKV 123

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEK 198
           SGGLHGVG+S VNALS  L +TV R       +F RG+P             SP+     
Sbjct: 124 SGGLHGVGVSCVNALSAWLRLTVRRDGKKHFMEFHRGVPQNRVLEEIDGVVTSPMPVIGD 183

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             N RGT + F  D  IFG+   +    L K  +  ++L+  V+      +   E     
Sbjct: 184 TEN-RGTEVHFMADETIFGNV-EYHYDILAKRIRELSFLNNGVRIRLLDQRSGKE----- 236

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
             E+F F GG+K +++   +N+S++   IF    EK G     VE A+ W +     +  
Sbjct: 237 --EDFAFVGGVKGFVEYINKNKSVLHPNIFHIMGEKDGV---GVEVAMQWNDSYNENVLC 291

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +GLR A+TR + KY    +   K  +    DD+      +LSV + 
Sbjct: 292 FTNNIPQRDGGTHLTGLRAAMTRVLNKYIADHEVAKKAKVETSGDDMREGLSCVLSVKVP 351

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           EP+F+ QTK KLVS + +  VE  +    + +L++ P +A  +   +++ +  R   RK 
Sbjct: 352 EPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPGDAKIICGKIVDAARARDAARKA 411

Query: 436 REVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE+ R+   +  + LPGKLADC +     +E++IVEGDSAGGSAKQ R+R  QA+LPLRG
Sbjct: 412 REMTRRKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRG 471

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIAS 553
           K+LNV  A  +K+ +++QI+ L+ ALGC    +    + LRY ++IIMTDADVDGAHI +
Sbjct: 472 KVLNVEKARYDKLLSSEQIVTLITALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRT 531

Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           LLLTFFY++M ++IE+ ++++  PPL++I  G    Y  DE      +      G
Sbjct: 532 LLLTFFYRQMPEMIERGYIYIAQPPLYKIKAGKDERYLKDESEVNAHILRLALQG 586



 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             +  ++      +  +   R+KGLGEM   QL ET MD   R LLRV+I   +      
Sbjct: 737 DFKSAMKWLLADAERNMSKQRYKGLGEMNPEQLWETTMDPQVRRLLRVQIEDAI----AA 792

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
                 LMG   + R  FI+  A    ++ 
Sbjct: 793 DGIFTTLMGDDVEPRRAFIESNALRAGNID 822


>gi|83945027|ref|ZP_00957393.1| DNA gyrase subunit B [Oceanicaulis alexandrii HTCC2633]
 gi|83851809|gb|EAP89664.1| DNA gyrase subunit B [Oceanicaulis alexandrii HTCC2633]
          Length = 800

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 241/575 (41%), Positives = 348/575 (60%), Gaps = 18/575 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           +++ +  Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   SETPNQEYGAESIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHCS 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            + V L  +G  +V D+GRGIP + H +    S  ++I+T LHAGGKFD ++Y++SGGLH
Sbjct: 62  QVTVCLHADGSASVTDDGRGIPTQIHAE-EGVSAAQVIMTQLHAGGKFDQNSYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL--EKKEKVRNKRGTRITFRPDP 213
           GVG+SVVNALSD L +T+ R     + +F RG P +     +      K+GT++ F P  
Sbjct: 121 GVGVSVVNALSDWLDLTIWRNGREHTMRFRRGDPENGQDLREVGDANGKKGTQVRFMPSE 180

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           + F D   F+ ARLL   +  A+L+  VK     ++E       P +E   + GG+  ++
Sbjct: 181 ETFSDIV-FERARLLHRLRELAFLNSGVKIVLRDEREA-----EPFEEVLEYEGGVAAFV 234

Query: 274 QTKLENRSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPEITSYCNTILTDEGGTHES 332
           Q     ++ I  +      E++G      +EW  ++ E    +  + N I   +GGTH +
Sbjct: 235 QHLDRTKTPIFPDPVLITGEREGVTVEAALEWNDSYHEN---VLCFTNNIPQRDGGTHLA 291

Query: 333 GLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR I +YA  +    K  +SI  DD       +LSV + +P+F+ QTK KLVS 
Sbjct: 292 GFRGALTRVINQYAGNSGIAAKSKVSITGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 351

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           + +  VE+A+ D    +  ++P+EA +++  ++E +  R   RK RE   RK+A+    L
Sbjct: 352 EVRPAVESAVYDTLTEWFEEHPVEAKQIVSKIVEAAAAREAARKARELTRRKSALDITSL 411

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC Q     +ELFIVEGDSAGGSAKQ R+R NQAVLPLRGKILNV  A  +K+ +
Sbjct: 412 PGKLADCQQKDPAKSELFIVEGDSAGGSAKQGRHRENQAVLPLRGKILNVERARFDKMLS 471

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           + Q+  L+ ALG    R Q   + LRY KVIIMTDADVDGAHI +LLLTFFY++M +LIE
Sbjct: 472 SDQVGTLITALGTGIGRDQIDYDKLRYHKVIIMTDADVDGAHIRTLLLTFFYRQMPELIE 531

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEE 603
           + HL++  PPL+++ +G    Y  D+      L E
Sbjct: 532 RGHLYIAQPPLYKVMRGKSERYLTDQSEMDAFLIE 566



 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 4/85 (4%)

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
             ++   +  G   ++I R+KGLGEM   QL ET +D   R+LLRV + +         +
Sbjct: 717 NALVSAVQAAGAKGLKIQRYKGLGEMNPDQLWETTLDPEARSLLRVSVTE----ADTADE 772

Query: 658 SINKLMGTKADERFKFIQERASFID 682
             +KLMG   + R  FIQE A   +
Sbjct: 773 LFSKLMGDVVEPRRDFIQEFALEAE 797


>gi|3550425|gb|AAC34893.1| DNA gyrase B subunit [Methylovorus sp. SS1]
          Length = 799

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 220/568 (38%), Positives = 335/568 (58%), Gaps = 21/568 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +YD+SSI+ILEGL+ VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ + I+V +
Sbjct: 3   DYDSSSIKILEGLDAVRKRPGMYIGDTSDGSGLHHMVFEVLDNAIDEALAGHCDDIKVII 62

Query: 102 DGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
             +  +++ DNGRGIP +      K   +S  EI++T LHAGGKFD ++Y++SGGLHGVG
Sbjct: 63  HPDNSVSISDNGRGIPTDIKQDDIKAVKRSAAEIVMTELHAGGKFDQNSYKVSGGLHGVG 122

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALSD L + + R   +   +F RG  + P+        ++GT + F    + FG 
Sbjct: 123 VSVVNALSDWLRLKIYRNGQVHQMEFRRGEAVRPVAVTG-TTERKGTEVHFLASTETFGV 181

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  VK      +         + E F   GG++ +++    
Sbjct: 182 V-EFHFEILAKRIRELSFLNNGVKIELIDQR-------NGKSENFAHSGGVRGFVEYMNR 233

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           +++++  + F    EK G    T+E ++ W +     +  + N I   +GGTH +GLR A
Sbjct: 234 SKTVLHPKPFYAVGEKDG---MTIEVSMQWNDSYAETVQCFTNNIPQRDGGTHLTGLRTA 290

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           +TR +  Y E  +   K  I    DD+      +LSV + EP+F+ QTK KLVS + Q  
Sbjct: 291 MTRTLNNYIEQNELAKKAKIETTGDDMREGLTCVLSVKVPEPKFSSQTKDKLVSSEVQPV 350

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           V+  +      +L++NP++A  +   +I+ +  R   RK      RK A+  + LPGKLA
Sbjct: 351 VQEVVAAKLAEFLLENPVDAKVICNKIIDAARARDAARKAREMTRRKGAMDTMGLPGKLA 410

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +      EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++Q+I 
Sbjct: 411 DCQERDPTKCELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKLLSSQEIA 470

Query: 515 DLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            L+ A+G          +++RY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ H++
Sbjct: 471 TLITAMGTGIGKDDFSADNVRYHRIIIMTDADVDGAHIRTLLLTFFYRQMTELVERGHIY 530

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +  PPL+++ QG    Y  D++   + L
Sbjct: 531 IAQPPLYKVKQGKDERYLKDQQELDQYL 558



 Score =  136 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G KS    +    +  L+      K  + I R+KGLGEM   QL ET MD   R LL
Sbjct: 702 IKRGEKSQPVSN---FKAALDWLLDEAKHNLNIQRYKGLGEMNPEQLWETTMDPTVRRLL 758

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V+I+  +       +    LMG + + R  FI+  A  ++++ 
Sbjct: 759 KVQIDDAI----AADEIFTTLMGDQVEPRRAFIEGNALGVNNLD 798


>gi|296157627|ref|ZP_06840462.1| DNA gyrase, B subunit [Burkholderia sp. Ch1-1]
 gi|295892399|gb|EFG72182.1| DNA gyrase, B subunit [Burkholderia sp. Ch1-1]
          Length = 823

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 232/597 (38%), Positives = 348/597 (58%), Gaps = 33/597 (5%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIA 91
               N    ++Y ASSI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +A
Sbjct: 2   TETNNSQPDNSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTY 148
           G+ N I+V +  +  +++ DNGRG+P          P +S  EI++T LHAGGKFD ++Y
Sbjct: 62  GHCNDIQVIIHADNSISITDNGRGVPTGLKMDDKHDPKRSAAEIVMTELHAGGKFDQNSY 121

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKK 196
           ++SGGLHGVG+S VNALS  L +T+ R       +F RG+P            +SP++  
Sbjct: 122 KVSGGLHGVGVSCVNALSAWLRLTIRRDGKKHFMEFHRGVPQNRIIEEIDGVAVSPIQVT 181

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
            +  N RGT + F  D  IFG+   +    L K  +  ++L+  V+   +  +       
Sbjct: 182 GETEN-RGTEVHFLADETIFGNI-EYHYDILAKRIRELSFLNNGVRIRLTDQR------- 232

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
             ++E+F F GG+K +++   +N+S++   IF    EK G     VE A+ W +     +
Sbjct: 233 TGKEEDFAFVGGVKGFVEYINKNKSVLHPNIFHISGEKDGV---GVEVAMQWNDSYNENV 289

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +GLR A+TR + KY    +   K  +    DD+      +LSV 
Sbjct: 290 LCFTNNIPQRDGGTHLTGLRAAMTRVLNKYINDHEVAKKAKVETSGDDMREGLSCVLSVK 349

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + EP+F+ QTK KLVS + +  VE+ +    + +L++ P +A  +   +++ +  R   R
Sbjct: 350 VPEPKFSAQTKDKLVSSEVRAPVEDVVAKALEEFLLETPNDAKIICSKIVDAARARDAAR 409

Query: 434 KQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           K RE+ R+   +  + LPGKLADC +     +E++IVEGDSAGGSAKQ R+R  QA+LPL
Sbjct: 410 KAREMTRRKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPL 469

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHI 551
           RGK+LNV  A  +K+ +++QI+ L+ ALGC    +    + LRY ++IIMTDADVDGAHI
Sbjct: 470 RGKVLNVEKARYDKLLSSEQIVTLITALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHI 529

Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
            +LLLTFFY++M ++IE+ ++++  PPLF+I  G    Y  DE      + +    G
Sbjct: 530 RTLLLTFFYRQMPEMIERGYIYIAQPPLFKIKAGKDERYLKDEAEVNAHILKLALQG 586



 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             +  ++      +  I   R+KGLGEM   QL ET MD   R LLRV+I   +      
Sbjct: 737 DFKSAMKWLLADAERNISKQRYKGLGEMNPGQLWETTMDPTVRRLLRVQIEDAI----AA 792

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
                 LMG   + R  FI+  A    ++ 
Sbjct: 793 DGIFTTLMGDDVEPRRAFIESNALRAGNID 822


>gi|188590798|ref|YP_001795398.1| DNA gyrase subunit b [Cupriavidus taiwanensis LMG 19424]
 gi|170937692|emb|CAP62676.1| DNA gyrase, subunit B (type II topoisomerase) [Cupriavidus
           taiwanensis LMG 19424]
          Length = 841

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 229/594 (38%), Positives = 340/594 (57%), Gaps = 36/594 (6%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94
            N    + Y ASSI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +AGY 
Sbjct: 5   QNPQQENTYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYC 64

Query: 95  NLIEVSLDGNGFLTVVDNGRGIP--VENHPKFP-NKSTLEIILTTLHAGGKFDNSTYEIS 151
             I+V++  +  +++VDNGRGIP  V+   K    +S  EI +T LHAGGKF+ ++Y++S
Sbjct: 65  TEIQVTIHSDNSISIVDNGRGIPPLVKFDDKHEPKRSAAEIAMTELHAGGKFNQNSYKVS 124

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP----------------LEK 195
           GGLHGVG+S VNALS  L +TV R   +   +F++G   +                   K
Sbjct: 125 GGLHGVGVSCVNALSKWLRLTVRRDGQVHLIEFAKGEVQNRIIETVDGPDGQPVEVSPMK 184

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
                +KRGT + F  D +IF +   F    L K  +  ++L+  V    +  +      
Sbjct: 185 ITGATDKRGTEVHFLADEEIFTNV-EFHYEVLSKRIRELSFLNNGVHIKLTDQR------ 237

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PE 314
              ++E+F F GG+K +++     ++ +   IF    EK G     VE A+ W +    +
Sbjct: 238 -TGKEEDFAFSGGVKGFVEYINRAKTTLHPNIFYANAEKDGI---AVEVAMQWNDGYNEQ 293

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSV 372
           +  + N I   +GGTH +GLR A+TR I KY E  +   K  +    DD+      +LSV
Sbjct: 294 VLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEENEIAKKAKVETSGDDMREGLACVLSV 353

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
            + EP+F+ QTK KLVS + +  VE  +      +L++ P +A  +   +++ +  R   
Sbjct: 354 KVPEPKFSSQTKDKLVSSEVRLPVEELVSKALTDFLLETPADAKTICGKIVDAARAREAA 413

Query: 433 RKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           RK RE+ R+   +  + LPGKLADC +     +ELF+VEGDSAGGSAKQ R+R  QA+LP
Sbjct: 414 RKAREMTRRKGVMDGMGLPGKLADCQEKDPAQSELFLVEGDSAGGSAKQGRDRKFQAILP 473

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAH 550
           L+GKILNV  A  +K+ ++Q+++ L+ ALG          + LRY ++IIMTDADVDG+H
Sbjct: 474 LKGKILNVERARFDKMLSSQEVLTLITALGTGIGKDDYNLDKLRYHRIIIMTDADVDGSH 533

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           I +LLLTFFY++M D+IE+ ++++  PPL++I  G +  Y  D+      L + 
Sbjct: 534 IRTLLLTFFYRQMPDIIERGYVYIAQPPLYKIKHGKEERYIKDDVELNAYLLKL 587



 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 4/93 (4%)

Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652
                   ++      +  +   R+KGLGEM   QL ET +D  +R LL+V+I   +   
Sbjct: 752 TVNDFHGAMQWLLAEAERGVSRQRYKGLGEMNPEQLFETTLDVTQRRLLKVQIEDAI--- 808

Query: 653 KDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
                    LMG + + R  FI+  A    ++ 
Sbjct: 809 -AADQIFTTLMGDEVEPRRNFIESNALVARNID 840


>gi|296115232|ref|ZP_06833873.1| DNA gyrase, B subunit [Gluconacetobacter hansenii ATCC 23769]
 gi|295978333|gb|EFG85070.1| DNA gyrase, B subunit [Gluconacetobacter hansenii ATCC 23769]
          Length = 839

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 227/609 (37%), Positives = 346/609 (56%), Gaps = 26/609 (4%)

Query: 3   DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRP 62
           D  ++  S +   S    +   +  EIP + A        +YDA+SI +L+GL+ VR RP
Sbjct: 9   DPVVEHLSGMSDPSNPDQKHDAEGEEIPVTGA--------DYDAASISVLKGLDAVRKRP 60

Query: 63  GMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENH 121
           GMYIG TD+   LHH+  E+IDNA+DE  AGYA    V+L+G+G +TV DNGRGIP + H
Sbjct: 61  GMYIGDTDDGSGLHHMAFEIIDNAVDEAQAGYATTCIVTLNGDGSVTVRDNGRGIPTDMH 120

Query: 122 PKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFS 181
            +    S  E++LT LHAGGKF+ ++Y++SGGLHGVG +VVNALS+ + V + R      
Sbjct: 121 HE-EGISAAEVVLTKLHAGGKFNQNSYKVSGGLHGVGAAVVNALSEWMEVRIWRNGQEHM 179

Query: 182 QKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241
            +F  G   +PL         RGT++TF+P  + F     F  + L +  +  A+L+  +
Sbjct: 180 IRFRAGERDAPLSVVGDSDEPRGTQVTFKPSAETFA-IVEFQFSVLERRLRELAFLNSGL 238

Query: 242 KTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
                 ++    +      E F++ GGL  +++     ++ I     TG  + +      
Sbjct: 239 AIILRDERHTPVRE-----EAFHYEGGLSAFVEWLDHGKTPIVEPPITGSLQNEDN-GIK 292

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII-S 359
           VE+A+ W +     +  + N I   +GG+H +G R ALTR + +YAE   +K+    +  
Sbjct: 293 VEFALTWNDSFHETMLCFTNNIPQRDGGSHLAGFRQALTRIVGRYAEANASKKDSHALAG 352

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           +D+      +LSV + +P+F+ QTK KLVS + Q  V  A  D   H+   +P EA +++
Sbjct: 353 EDMREGLTAVLSVKVPDPKFSSQTKDKLVSSEVQPVVHAAAADMISHWFETHPKEARQIV 412

Query: 420 EWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
             V++ +  R   R+ RE+ R+   +    LPGKLADC +     +ELFIVEGDSAGG+A
Sbjct: 413 AKVMDAAAAREAARRARELTRRKGVLDISSLPGKLADCQERDPAKSELFIVEGDSAGGTA 472

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT------RSQYREED 532
           KQ R+R  QA+LPL+GKILNV  A  +++  + +I  L+ ALG            +  E 
Sbjct: 473 KQGRDRRFQAILPLKGKILNVERARFDRMLGSAEIGTLITALGTGIGRGDVEHGGFSIEK 532

Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAH 592
           LRY +++IMTDADVDG+HI +LLLTFF+++M +LIE  +L++  PPL+R  +G    Y  
Sbjct: 533 LRYHRIVIMTDADVDGSHIRTLLLTFFFRQMPELIENGYLYIAQPPLYRAKRGNDERYLK 592

Query: 593 DEEHKQKIL 601
           D+   ++ L
Sbjct: 593 DDAALEQYL 601



 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
           E     G+  + I+RFKGLGEM  +QL ET +D   RTLL+V +    N+ +      + 
Sbjct: 759 ERIIAQGRRGLSINRFKGLGEMNDAQLWETTLDPAMRTLLQVRVGDVENAAQ----VFST 814

Query: 662 LMGTKADERFKFIQERASFIDDVG 685
           LMG   + R  FI   A  + ++ 
Sbjct: 815 LMGDVVEPRRDFIVGNALKVANLD 838


>gi|291278436|ref|YP_003495271.1| DNA gyrase subunit B [Deferribacter desulfuricans SSM1]
 gi|290753138|dbj|BAI79515.1| DNA gyrase, B subunit [Deferribacter desulfuricans SSM1]
          Length = 789

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 234/566 (41%), Positives = 339/566 (59%), Gaps = 17/566 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           + ++Y+  SI++LEGLE VR RPGMYIG  D + LHHL  EV+DN++DE  AG+   I +
Sbjct: 2   SKNSYNEESIKVLEGLEAVRQRPGMYIGSVDHRGLHHLIYEVVDNSIDEASAGFCKNISI 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  +T+ D+GRGIPV  HP    K T+E+++TTLHAGGKF+   Y  SGGLHGVGI
Sbjct: 62  TIHIDNSVTIEDDGRGIPVGIHPTM-KKPTVEVVMTTLHAGGKFEKGAYYASGGLHGVGI 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+ L VTV R   +F Q++ +G P++ LEK  K     GT+I FRPD  IF D 
Sbjct: 121 SVVNALSEFLEVTVKRDGGVFFQRYEKGKPVTKLEKIGKSNK-TGTKIRFRPDIDIFED- 178

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  AYL+  VK  ++ ++       I +K+EF+  GG+ +Y++   + 
Sbjct: 179 LDFSHDVLQKRFRELAYLNPGVKITFNDER-------IDKKQEFFAEGGIVSYVKYLNKT 231

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ +  E    K   +     +VE A  + +    +I S+ N I T EGGTHE+G + A 
Sbjct: 232 KNTLLKEPVFIKGIHEDV---SVEIAFTYNDGYNEQILSFVNNIHTHEGGTHEAGFKNAY 288

Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           TR    +       K+ +S+  DD+      ++SV + +P F GQTK KL S  A+  VE
Sbjct: 289 TRIFNNFIAKNNLLKQKVSLTGDDIREGLSAVISVRLHDPIFEGQTKGKLGSTTAKTAVE 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
           N +      +  +N      +L+  ++    R   RK +E   RK A+    LPGKLADC
Sbjct: 349 NVMNSTLPDFFEKNINYVKIILDKALQAYRAREAARKAKELTRRKNALEISTLPGKLADC 408

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            +      ELFIVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N +I  +
Sbjct: 409 QEKDPDKAELFIVEGDSAGGSAKQCRDRRFQAILPLKGKIINVEKARFDKILSNDEIKAM 468

Query: 517 VQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           + ALG       +    +RY+K+IIMTDADVDGAHI +LLLTFFY+ + ++IE+ +L++ 
Sbjct: 469 ITALGTGIGHKNFDINKIRYKKIIIMTDADVDGAHITTLLLTFFYRYLREIIERGYLYIA 528

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKIL 601
            PPL+++ +G    Y HDE+  +  +
Sbjct: 529 RPPLYKVKKGKTEKYIHDEKEMEDFI 554



 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 18/129 (13%)

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEH------KQKILEEFKKHGKGKIEISR 616
             +L ++  L +   PL     G +      +          +++E  ++ G   + + R
Sbjct: 672 FREL-KRNFLKIK--PL-----GKRPFEITIDGEKSVFDTYDEMMESLEEIGLKGVYVQR 723

Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           +KGLGEM   QL ET +D  +R L +V+I       +   +  + LMG     R +FI+E
Sbjct: 724 YKGLGEMNPQQLWETTVDPERRVLYKVKIED----AEAADELFSLLMGDVVGPRREFIEE 779

Query: 677 RASFIDDVG 685
            A  + ++ 
Sbjct: 780 NALNVKNLD 788


>gi|33519500|ref|NP_878332.1| DNA gyrase subunit B [Candidatus Blochmannia floridanus]
 gi|33517163|emb|CAD83545.1| DNA gyrase subunit B [Candidatus Blochmannia floridanus]
          Length = 806

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 232/566 (40%), Positives = 341/566 (60%), Gaps = 19/566 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            +YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DEVI+GY N I V+
Sbjct: 3   SSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEVISGYCNKILVT 62

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFDN+ Y++SGGLHGVG+S
Sbjct: 63  IHQDNSVSVKDDGRGIPTGLHEE-SGISAAEVIMTVLHAGGKFDNTNYKVSGGLHGVGVS 121

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS++L + + R   I+ Q F  G P SPL    + +   GT I F P+  IF +K 
Sbjct: 122 VVNALSEKLELIIERDFKIYKQVFYLGKPKSPLSVVGESKK-SGTMIRFWPNLHIFTNKT 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L +  +  A+L+  V       +   E       + FY  GG+K +++     +
Sbjct: 181 EFQYEILARRFKELAFLNSGVSIILRDFRNNKE-------DIFYCNGGIKAFIKYLNVKK 233

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + I S IF     K       ++ A+ W +     I S+ N I   +GGTH SGL+ A+T
Sbjct: 234 TPIHSNIFYYSGYK---GEIGIKVALQWNDSFQERIYSFTNNIPQRDGGTHLSGLKSAIT 290

Query: 340 RGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           R I  Y +       K  I  + DD+    V +LS++I  P+F+ QTK KL+S + +  V
Sbjct: 291 RTIHFYIDKEGYNNKKDKIVTMGDDVREGLVAVLSIYIPNPKFSSQTKDKLISSEVKTAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK-LRLPGKLAD 455
           E+ + +    + ++NP ++  ++  VI  +  R   RK R+++R+  +     LPGKLAD
Sbjct: 351 ESLIYEKLIEFFLENPSDSKSIINKVISAARARESARKIRDLSRRKGVSDFSVLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++ ++M 
Sbjct: 411 CQEKNPVYSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSPEVMS 470

Query: 516 LVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALGC           LRY  +I+MTDADVDGAHI +LLLTFFY+ M ++I++ H+F+
Sbjct: 471 LITALGCGIGQNEYNLNKLRYHSIILMTDADVDGAHIRTLLLTFFYRYMPEIIDKGHIFI 530

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600
             PPL+++ +G +S Y  DEE   + 
Sbjct: 531 AQPPLYKVQKGNQSQYIKDEEEMYQY 556



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 15/130 (11%)

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615
           L  F ++M +L+   H ++     ++  +              + +E   +  +  + I 
Sbjct: 691 LVTFGKKMNELLLSNHSYIQ----YKNDRKK-------INSFDQAIEWLMQESRKGLIIQ 739

Query: 616 RFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675
           R+KGLGEM   QL ET M+   R +L+V +   L    +  +  + LMG   + R  FI+
Sbjct: 740 RYKGLGEMNPDQLWETTMNPKNRCMLKVTVRDAL----EADNLFSTLMGDVVEPRRIFIE 795

Query: 676 ERASFIDDVG 685
           + A    +V 
Sbjct: 796 DNALKAKNVD 805


>gi|113866034|ref|YP_724523.1| DNA gyrase subunit B [Ralstonia eutropha H16]
 gi|113524810|emb|CAJ91155.1| DNA gyrase subunit B [Ralstonia eutropha H16]
          Length = 841

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 231/594 (38%), Positives = 343/594 (57%), Gaps = 36/594 (6%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94
            N    + Y ASSI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +AGY 
Sbjct: 5   QNPQQENTYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYC 64

Query: 95  NLIEVSLDGNGFLTVVDNGRGIP--VENHPKFP-NKSTLEIILTTLHAGGKFDNSTYEIS 151
             I+V++  +  +++VDNGRGIP  V+   K    +S  EI +T LHAGGKF+ ++Y++S
Sbjct: 65  TEIQVTIHSDNSISIVDNGRGIPPLVKFDDKHEPKRSAAEIAMTELHAGGKFNQNSYKVS 124

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP----------------LEK 195
           GGLHGVG+S VNALS  L +TV R   +   +F++G   +                   K
Sbjct: 125 GGLHGVGVSCVNALSKWLRLTVRRDGQVHLIEFAKGDVQNRIVETVTGPDGQPVEVSPMK 184

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
                +KRGT + F  D +IF +   F    L K  +  ++L+  V       +      
Sbjct: 185 IIGATDKRGTEVHFLADEEIFTNV-EFHYEILSKRIRELSFLNNGVHIKLVDQR------ 237

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PE 314
              ++E+F F GG+K +++    ++S++   IF   TEK G     VE A+ W +    +
Sbjct: 238 -TGKEEDFAFSGGVKGFVEYINRSKSVLHPNIFYANTEKDGI---AVEVAMQWNDGYNEQ 293

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSV 372
           +  + N I   +GGTH +GLR A+TR I KY E  +   K  +    DD+      +LSV
Sbjct: 294 VLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEENEVAKKAKVETTGDDMREGLSCVLSV 353

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
            + EP+F+ QTK KLVS + +  VE  +    + +L++ P +A  +   +++ +  R   
Sbjct: 354 KVPEPKFSSQTKDKLVSSEVRLPVEELVGKALNDFLLETPGDAKIICGKIVDAARAREAA 413

Query: 433 RKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           RK RE+ R+  +   + LPGKLADC +     +ELF+VEGDSAGGSAKQ R+R  QA+LP
Sbjct: 414 RKAREMTRRKGLMDGMGLPGKLADCQEKDPALSELFLVEGDSAGGSAKQGRDRKFQAILP 473

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAH 550
           L+GKILNV  A  +K+ ++Q+++ L+ ALG          + LRY ++IIMTDADVDG+H
Sbjct: 474 LKGKILNVERARFDKMLSSQEVLTLITALGTGIGKDDYNLDKLRYHRIIIMTDADVDGSH 533

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           I +LLLTFFY++M D+IE+ ++++  PPL++I  G +  Y  D+      L + 
Sbjct: 534 IRTLLLTFFYRQMPDIIERGYVYIAQPPLYKIKHGKEERYIKDDVELNAYLLKL 587



 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 4/93 (4%)

Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652
                   ++      +  +   R+KGLGEM   QL ET +D  +R LL+V+I   +   
Sbjct: 752 TVNDFHGAMQWLLAEAERGVSRQRYKGLGEMNPEQLFETTLDVTQRRLLKVQIEDAI--- 808

Query: 653 KDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
                    LMG + + R  FI+  A    ++ 
Sbjct: 809 -AADQIFTTLMGDEVEPRRNFIESNALVARNID 840


>gi|188474273|gb|ACD49736.1| DNA gyrase subunit B [Vibrio mimicus]
          Length = 778

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 220/559 (39%), Positives = 335/559 (59%), Gaps = 17/559 (3%)

Query: 56  EPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGR 114
           + VR RPGMYIG TD+   LHH+  EV+DN++DE +AGY   I V++  +  ++V D+GR
Sbjct: 1   DAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVVTIHEDNSVSVSDDGR 60

Query: 115 GIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA 174
           GIP E HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ 
Sbjct: 61  GIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVLLTIY 119

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   I +Q +  G+P +PL    +   + GT + F P  + F +   F    L K  +  
Sbjct: 120 RGGKIHTQTYHHGVPQAPLSVVGET-ERTGTTVRFWPSAQTFTNI-EFHYDILAKRLREL 177

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V    + ++E  +K      + F + GG++ ++     N++ I  ++F    E+
Sbjct: 178 SFLNSGVSIRLTDEREEDKK------DHFMYEGGIQAFVTHLNRNKTPIHEKVFHFNQER 231

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
           +     +VE A+ W +     I  + N I   +GGTH +G R ALTR +  Y +      
Sbjct: 232 ED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDKEGFSK 289

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +L +N
Sbjct: 290 KAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLADFLAEN 349

Query: 412 PIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P EA  +   +I+ +  R   RK R    RK A+    LPGKLADC +     +EL+IVE
Sbjct: 350 PSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVE 409

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYR 529
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y 
Sbjct: 410 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYN 469

Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV 589
            + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++  PPL+++ +G +  
Sbjct: 470 PDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVKKGKQEQ 529

Query: 590 YAHDEEHKQKILEEFKKHG 608
           Y  DE+   +        G
Sbjct: 530 YIKDEDAMNQYQVALAMDG 548



 Score =  126 bits (317), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 7/94 (7%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G +             LE   K  +  + I R+KGLGEM   QL ET MD + R ++
Sbjct: 692 IKRGERVQPISS---FAAALEWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPDTRRMM 748

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675
           +V I   +       +    LMG + + R  F++
Sbjct: 749 QVTIEDAVG----ADELFTTLMGDQVEPRRNFME 778


>gi|148555711|ref|YP_001263293.1| DNA gyrase subunit B [Sphingomonas wittichii RW1]
 gi|148500901|gb|ABQ69155.1| DNA gyrase subunit B [Sphingomonas wittichii RW1]
          Length = 826

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 226/603 (37%), Positives = 345/603 (57%), Gaps = 34/603 (5%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVI 90
           +    N   +++Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV DNA+DE +
Sbjct: 2   TNETENSPNANSYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEAL 61

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN----S 146
           AG+ + I ++L+ +G ++V DNGRGIP   H +    S  E+I+T LHAGGKFDN    +
Sbjct: 62  AGHCDRIVITLNPDGSVSVEDNGRGIPTGIHAE-EGVSAAEVIMTQLHAGGKFDNTNDAN 120

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
            Y++SGGLHGVG+SVVNALSD L +T+ R       +F RG  ++PL+       K+GT+
Sbjct: 121 AYKVSGGLHGVGVSVVNALSDVLDLTIWRDGEEHYMRFQRGDAVAPLKVVGPANGKKGTK 180

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           +TF P P+ F     FD  +L    +  A+L+  V+   + ++    K         ++ 
Sbjct: 181 VTFLPSPETFK-ITEFDFDKLEHRYRELAFLNSGVRLFLADERHAERKEIE-----LFYE 234

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGT-HRGTVEWAIAWCEENPEITSYCNTILTD 325
           GG+  +++     +  +  +      ++        +EW  ++     ++  + N I   
Sbjct: 235 GGIAAFVKYLDRTKVALMPDPVAIMGQRDDVGIDVALEWNDSY---YEQVLCFTNNIPQR 291

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +  R ALTR +  YAE +    K  +S+  DD+      I+SV + +P+F+ QT
Sbjct: 292 DGGTHLAAFRAALTRTLNNYAEKSGALKKEKVSLTGDDMREGLTAIVSVKLPDPKFSSQT 351

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443
           K KLVS + ++ +E+ + D    +L +NP  A  +++ VI+ +  R   RK RE+ R+  
Sbjct: 352 KDKLVSSEVRQPLESLMADKLAEWLEENPAHARSIIQKVIDAAAAREAARKARELTRRKG 411

Query: 444 -IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
            +    LPGKLADC +      ELF+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A
Sbjct: 412 VMDIASLPGKLADCQERDPSKCELFLVEGDSAGGSAKQGRDRVYQAILPLKGKILNVERA 471

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
             +++ +++++  L+QA+G          E LRY K++IMTDADVDGAHI +LLLTFFY+
Sbjct: 472 RFDRMLSSKEVGTLIQAMGTGIGRDDFNLEKLRYHKIVIMTDADVDGAHIRTLLLTFFYR 531

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
            M  +IE  HL++  PPL+++ +G   VY  D+    + L                 GLG
Sbjct: 532 HMKPIIENGHLYIAQPPLYKVAKGRSEVYLKDDAALDEYLVTG--------------GLG 577

Query: 622 EML 624
            M+
Sbjct: 578 AMM 580



 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L+     G+  + I R+KGLGEM A QL ET +D   R +L+VE+           + 
Sbjct: 743 NLLDAVLAAGRKGMSIQRYKGLGEMNAEQLWETTLDPANRAMLKVEV----AQADVADEI 798

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             +LMG   + R +FIQE A  + ++ 
Sbjct: 799 FTRLMGDVVEPRREFIQENALSVANLD 825


>gi|325980884|ref|YP_004293286.1| DNA gyrase, B subunit [Nitrosomonas sp. AL212]
 gi|325530403|gb|ADZ25124.1| DNA gyrase, B subunit [Nitrosomonas sp. AL212]
          Length = 806

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 223/583 (38%), Positives = 347/583 (59%), Gaps = 20/583 (3%)

Query: 29  IPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMD 87
              +P    ++ ++ YD+ SI+IL+GL+ VR RPGMYIG T D   LHH+  EV+DNA+D
Sbjct: 2   SDQNPHVPKENPAN-YDSESIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAID 60

Query: 88  EVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFP-NKSTLEIILTTLHAGGKFDNS 146
           E +AG+ + I V++  +  ++V+DNGRGIP          +S  EI++T LHAGGKFD++
Sbjct: 61  EALAGHCDEITVTIHPDNSVSVLDNGRGIPTGIKQDDEMKRSAAEIVMTELHAGGKFDDN 120

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS+ L +T+ R +     +F  G+P+ PLE   +     GT 
Sbjct: 121 SYKVSGGLHGVGVSVVNALSEWLKLTIRRDSKTHQIEFRMGVPVKPLEIIGESERH-GTE 179

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F    +IFG+   +      K  +  ++L+  VK      +   +       E+F F 
Sbjct: 180 VHFLASKEIFGNI-EYHYDIFAKRLRELSFLNNGVKIHLIDQRSGKD-------EKFAFT 231

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG++ +++    +++++   IF     K       VE ++ W +    ++  + N I   
Sbjct: 232 GGIRNFVEYINRSKTVLHPSIFYTTGVKDNI---AVEVSMQWNDSYTEQVLCFTNNIPQK 288

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +GLR A+TR +  Y E  +   K  +    DD+      +LSV + EP+F+ QT
Sbjct: 289 DGGTHLTGLRAAMTRTLNNYIEKNELAKKAKVETSGDDMREGLSCVLSVKLFEPKFSSQT 348

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443
           K KLVS + +  VE  +      YL++NP++A  +   +I+ +  R   RK RE+ R+  
Sbjct: 349 KEKLVSSEVRPVVEEVVTQKLSEYLLENPLDAKTICNKIIDSARAREAARKARELTRRKG 408

Query: 444 -IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
            +  + LPGKLADC +      EL++VEGDSAGGSAKQ R+R  QA++PL+GKILNV  A
Sbjct: 409 VLDSMGLPGKLADCQEKNPALCELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKA 468

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
             +K+ ++Q+I+ L+ ALG    + +Y  + LRY ++IIMTDADVDG+HI +LLLTFFY+
Sbjct: 469 RFDKLISSQEIISLITALGTGFGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYR 528

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           +M +LIE+ H+++  PPL++I  G K  Y  D+   ++ L   
Sbjct: 529 QMPELIERGHIYIAQPPLYKIKHGKKERYVKDDHELKQHLLSL 571



 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 4/91 (4%)

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
              +  LE   +  K  + + R+KGLGEM  SQL ET MD   R LLR +I   +     
Sbjct: 719 NEFKHALEWLLEEAKKGLNVQRYKGLGEMNPSQLWETTMDPENRRLLRAQIEDSI----L 774

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T +    LMG   + R  FI++ A    ++ 
Sbjct: 775 TDEIFTTLMGDMVEPRRAFIEKNALRATNID 805


>gi|187922038|ref|YP_001893680.1| DNA gyrase subunit B [Burkholderia phytofirmans PsJN]
 gi|187713232|gb|ACD14456.1| DNA gyrase, B subunit [Burkholderia phytofirmans PsJN]
          Length = 823

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 232/597 (38%), Positives = 348/597 (58%), Gaps = 33/597 (5%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIA 91
               N    ++Y ASSI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +A
Sbjct: 2   TETNNSQPDNSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTY 148
           G+ N I+V +  +  +++ DNGRG+P          P +S  EI++T LHAGGKFD ++Y
Sbjct: 62  GHCNDIQVIIHADNSISITDNGRGVPTGLKMDDKHDPKRSAAEIVMTELHAGGKFDQNSY 121

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKK 196
           ++SGGLHGVG+S VNALS  L +T+ R       +F RG+P            +SP++  
Sbjct: 122 KVSGGLHGVGVSCVNALSAWLRLTIRRDGKKHFMEFHRGVPQNRIIEEIDGVAVSPIQVT 181

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
            +  N RGT + F  D  IFG+   +    L K  +  ++L+  V+   +  +       
Sbjct: 182 GETEN-RGTEVHFLADETIFGNI-EYHYDILAKRIRELSFLNNGVRIKLTDQR------- 232

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
             ++E+F F GG+K +++   +N+S++   IF    EK G     VE A+ W +     +
Sbjct: 233 TGKEEDFAFVGGVKGFVEYINKNKSVLHPNIFHISGEKDGV---GVEVAMQWNDSYNENV 289

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +GLR A+TR + KY    +   K  +    DD+      +LSV 
Sbjct: 290 LCFTNNIPQRDGGTHLTGLRAAMTRVLNKYINDHEVAKKAKVETSGDDMREGLSCVLSVK 349

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + EP+F+ QTK KLVS + +  VE+ +    + +L++ P +A  +   +++ +  R   R
Sbjct: 350 VPEPKFSAQTKDKLVSSEVRAPVEDVVAKALEEFLLETPNDAKIICSKIVDAARARDAAR 409

Query: 434 KQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           K RE+ R+   +  + LPGKLADC +     +E++IVEGDSAGGSAKQ R+R  QA+LPL
Sbjct: 410 KAREMTRRKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPL 469

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHI 551
           RGK+LNV  A  +K+ +++QI+ L+ ALGC    +    + LRY ++IIMTDADVDGAHI
Sbjct: 470 RGKVLNVEKARYDKLLSSEQIVTLITALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHI 529

Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
            +LLLTFFY++M ++IE+ ++++  PPLF+I  G    Y  DE      + +    G
Sbjct: 530 RTLLLTFFYRQMPEMIERGYIYIAQPPLFKIKAGKDERYLKDEAEVNAHILKLALQG 586



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             +  ++      +  I   R+KGLGEM   QL ET MD   R LLRV+I   +      
Sbjct: 737 DFKSAMKWLLADAERNISKQRYKGLGEMNPGQLWETTMDPTVRRLLRVQIEDAI----AA 792

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
                 LMG   + R  FI+  A    ++ 
Sbjct: 793 DGIFTTLMGDDVEPRRAFIESNALRAGNID 822


>gi|149196297|ref|ZP_01873352.1| DNA gyrase subunit B [Lentisphaera araneosa HTCC2155]
 gi|149140558|gb|EDM28956.1| DNA gyrase subunit B [Lentisphaera araneosa HTCC2155]
          Length = 838

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 215/578 (37%), Positives = 334/578 (57%), Gaps = 13/578 (2%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           +   ++ +  Y A SI +++GLE VR RP MYIG T+E+ LHHL  EV+DN++DE +AG+
Sbjct: 2   SEEQENQAGEYGADSISVMKGLEAVRKRPSMYIGDTNERGLHHLVYEVVDNSIDEALAGH 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
            N I V L  +  +TVVD+GRGIPV  H +      +E++LT LHAGGKFD  +Y++SGG
Sbjct: 62  CNNITVKLHIDNSVTVVDDGRGIPVNIHEE-EGIPAVELVLTKLHAGGKFDKDSYKVSGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+S VNALS+ + V V R  T+   +F RG+  + L+      N  GT + F+PD 
Sbjct: 121 LHGVGVSCVNALSEWMEVKVHRDETLHFIRFERGLTETSLKTIGHT-NITGTEVIFKPDF 179

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IF +   +    L K  +  A+L+  +   +  ++          +E FYFPGG+  ++
Sbjct: 180 EIFTETLIYKWDILAKRLRELAFLNPGITINFIDERAED----GERRETFYFPGGIGEFV 235

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   + ++++ ++  T  TEK G    T + +  + +     I SYCN I T EGGTH +
Sbjct: 236 KHLNDGKTVV-TDTVTFSTEKDGV---TADVSFQYHDGFQENIYSYCNNIHTIEGGTHLA 291

Query: 333 GLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           G + ALT  I  Y +     K   ++   D+      I+SV + EP+F GQTKTKL + +
Sbjct: 292 GFQTALTASINSYMKNDSKFKNEKNVSGTDVREGLTAIISVKVPEPQFEGQTKTKLGNNE 351

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
            +  V   +   F+ +L +NP  A  ++ + ++         R ++ + +   +      
Sbjct: 352 VRSIVRAIVSTSFNEFLEENPKAAKVVVEKALLANRASAAALRARQLIRKDNVLEGFADA 411

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL+ CS       E+FIVEGDSAGGSAKQ RN   QA+LPLRGK++NV  A  +K+  N
Sbjct: 412 GKLSGCSSKNPDECEIFIVEGDSAGGSAKQGRNSEVQAILPLRGKLINVEKARIDKVFAN 471

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
            +I  L+ A+GC   +++  E +RY+K++IMTDADVDG+HI +LLLTFF+++M  LIE  
Sbjct: 472 TEIGSLISAIGCGVGNEFDVEKIRYKKIVIMTDADVDGSHIMTLLLTFFFRQMKPLIEAG 531

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++++  PPL+++ +  +  Y  ++      L E    G
Sbjct: 532 YIYVAQPPLYKVVRRKREEYIKNDAMLNNFLLELGVDG 569



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 7/108 (6%)

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           P+F +T G             ++ E  K  G   +++ R+KGLGEM A QL ET MD  +
Sbjct: 737 PIFNLTDGNNDTPIFT---LIQLFEAIKDEGSQGLKLQRYKGLGEMNADQLWETTMDPTR 793

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           R LL+V +   +    + +   + LMG   + R  FI++ ++ + ++ 
Sbjct: 794 RDLLQVTMEDAV----EAERMFSLLMGDVVEPRRHFIEKYSTTLKELD 837


>gi|157964719|ref|YP_001499543.1| DNA gyrase subunit B [Rickettsia massiliae MTU5]
 gi|157844495|gb|ABV84996.1| DNA gyrase subunit B [Rickettsia massiliae MTU5]
          Length = 808

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 233/564 (41%), Positives = 332/564 (58%), Gaps = 12/564 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
             +Y A SI++L+GLE VR RPGMYIG   +   LHH+  EV+DNA+DE +AGY NL+ V
Sbjct: 13  ESSYGADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNAIDESLAGYCNLVRV 72

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L+ NG +TV DNGRGIPVE H +    S  E+I+T LHAGGKFD +TY+++GGLHGVG+
Sbjct: 73  TLNKNGSVTVSDNGRGIPVEIHEE-EGISAAEVIMTQLHAGGKFDQNTYKVAGGLHGVGV 131

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+ L + + R N  +  +F+ GI  +PL   ++  +K+GT +TF P  + F + 
Sbjct: 132 SVVNALSEWLELRIWRNNKEYLIRFNNGITEAPLAVVKENIDKKGTEVTFFPSVETFTNI 191

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             FD   +    +  A+L+  VK     ++    K        FY+ GG++ Y++     
Sbjct: 192 -EFDFGTIEHRLRELAFLNSGVKILLVDNRFEEVKKVE-----FYYTGGIEAYVKYIDRA 245

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  I          +      + E A+ W +     I  + N I   +GGTH S  + A+
Sbjct: 246 KHAIHP--CIVVNTENVESGMSFELAMHWNDSYHENILCFTNNIRQRDGGTHLSAFKSAI 303

Query: 339 TRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
           TR I  Y + T  K       DD       +LSV + +P+F+ QTK KLVS + +  VEN
Sbjct: 304 TRVITSYLDTTNKKAKNDFSGDDTREGLCCVLSVKVPDPKFSSQTKDKLVSSEVRPVVEN 363

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
           A+      +  ++P EA  ++  ++E +  R   RK RE   RK+A+    LPGKLADC 
Sbjct: 364 AVYTKVLEWFEEHPAEAKAIIAKIMEAANAREAARKARELTRRKSALEVSNLPGKLADCH 423

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +ELFIVEGDSAGG+AKQ R+   QA+LPLRGKILNV  A  +K+  + QI  L+
Sbjct: 424 AKDPAISELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGSDQIGTLI 483

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG     ++  E LRY KVIIMTDADVDG+HI +LLLTFFY+ M +LI + +L++  P
Sbjct: 484 TALGISVEREFSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPELINKGYLYIAQP 543

Query: 578 PLFRITQGTKSVYAHDEEHKQKIL 601
           PL+++ +G   +Y  +E+  Q  L
Sbjct: 544 PLYKVKKGAAELYLKNEQALQDYL 567



 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 56/136 (41%), Gaps = 21/136 (15%)

Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK 609
            I+ L LT F      L              ++   ++             L    + GK
Sbjct: 693 QISKLALTIFDIFSKQL--------------KLIVKSQEFDILTPSQL---LNTIIECGK 735

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669
             I I RFKGLGEM + QL ET +D  KRTLL+V +      + + +   + LMG   + 
Sbjct: 736 RGINIQRFKGLGEMNSDQLWETTLDPTKRTLLQVRV----AEIDEAEGIFSTLMGDVVEP 791

Query: 670 RFKFIQERASFIDDVG 685
           R  FIQ  A  + ++ 
Sbjct: 792 RRLFIQANALNVVNLD 807


>gi|30248034|ref|NP_840104.1| DNA gyrase subunit B [Nitrosomonas europaea ATCC 19718]
 gi|30179919|emb|CAD83914.1| DNA gyrase, subunit B:DNA topoisomerase II gyrB [Nitrosomonas
           europaea ATCC 19718]
          Length = 809

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 221/582 (37%), Positives = 345/582 (59%), Gaps = 19/582 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNA 85
                  A    ++  +Y++ SI+IL+GL+ VR RPGMYIG T D   LHH+  EV+DNA
Sbjct: 2   NTNQPESAKKTDNSHRDYNSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVVDNA 61

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFP-NKSTLEIILTTLHAGGKFD 144
           +DE +AGY + I V +  +  +++ DNGRGIP +        +S  EI++T LHAGGKFD
Sbjct: 62  IDEALAGYCDDISVIIHADNSVSIHDNGRGIPTDIKQDDELKRSAAEIVMTELHAGGKFD 121

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+ L +T+ R   ++  +F  G+ ++PL+   +     G
Sbjct: 122 DNSYKVSGGLHGVGVSVVNALSEWLRLTIRRNGNVYQMEFREGVAVAPLKVTGQTEKH-G 180

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F     +FGD   +      K  +  ++L+  +K   +  ++  E       E F 
Sbjct: 181 TEVHFLASQSVFGDIT-YHYDIFAKRLRELSFLNHGIKIRLADQRDDRE-------EVFA 232

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           F GG++ +++    +++++   IF  K  K      TVE A+ W +    ++  + N I 
Sbjct: 233 FTGGIRNFVEYINRSKTVLHPSIFYAKGLKDNI---TVEIAMQWNDSYAEQVLCFTNNIP 289

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +GLR A+TR +  Y E  +   K  +    DD+      +LSV + EP+F+ 
Sbjct: 290 QKDGGTHLTGLRAAMTRTLNNYIEKNELAKKAKVDTTGDDMREGITCVLSVKLFEPKFSS 349

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK KLVS + +  VE  +      +L++NP EA  +   +IE +  R   RK RE+ R+
Sbjct: 350 QTKEKLVSSEVRPAVEEIVVQKLSDFLLENPNEAKTICNKIIEAARAREAARKARELTRR 409

Query: 442 TA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
              +  + LPGKLADC +      EL++VEGDSAGGSAKQ R+R  QA++PL+GKILNV 
Sbjct: 410 KGVLDSMGLPGKLADCQEKDPKLCELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVE 469

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
            +  +K+ ++Q+I+ L+ ALG    + +Y  + LRY ++IIMTDADVDG+HI +LLLTFF
Sbjct: 470 KSRFDKLISSQEIVSLITALGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFF 529

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           Y++M +LIE+ H+++  PPL++I  G +  Y  D+   +  +
Sbjct: 530 YRQMPELIERGHIYIAQPPLYKIKHGKQERYLKDDYELKHYI 571



 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 7/105 (6%)

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           ++ +G + +        ++ LE   +  K  I I R+KGLGEM   QL ET MD   R L
Sbjct: 711 KVKRGEQEI---SVREFKEALEWLLEETKKGITIQRYKGLGEMNPEQLWETTMDPGNRRL 767

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           LR +I   +     T +    LMG   + R  FI+  A    ++ 
Sbjct: 768 LRAQIEDSI----LTDEIFTTLMGDVVEPRRAFIESNALRARNID 808


>gi|91781387|ref|YP_556593.1| DNA gyrase subunit B [Burkholderia xenovorans LB400]
 gi|91685341|gb|ABE28541.1| DNA gyrase subunit B [Burkholderia xenovorans LB400]
          Length = 823

 Score =  495 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 232/597 (38%), Positives = 348/597 (58%), Gaps = 33/597 (5%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIA 91
               N    ++Y ASSI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +A
Sbjct: 2   TETNNSQPDNSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTY 148
           G+ N I+V +  +  +++ DNGRG+P          P +S  EI++T LHAGGKFD ++Y
Sbjct: 62  GHCNDIQVIIHADNSISITDNGRGVPTGLKMDDKHDPKRSAAEIVMTELHAGGKFDQNSY 121

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKK 196
           ++SGGLHGVG+S VNALS  L +T+ R       +F RG+P            +SP++  
Sbjct: 122 KVSGGLHGVGVSCVNALSAWLRLTIRRDGKKHFMEFHRGVPQNRIIEEIDGVAVSPIQVT 181

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
            +  N RGT + F  D  IFG+   +    L K  +  ++L+  V+   +  +       
Sbjct: 182 GETEN-RGTEVHFLADETIFGNI-EYHYDILAKRIRELSFLNNGVRIKLTDQR------- 232

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
             ++E+F F GG+K +++   +N+S++   IF    EK G     VE A+ W +     +
Sbjct: 233 TGKEEDFAFVGGVKGFVEYINKNKSVLHPNIFHISGEKDGV---GVEVAMQWNDSYNENV 289

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +GLR A+TR + KY    +   K  +    DD+      +LSV 
Sbjct: 290 LCFTNNIPQRDGGTHLTGLRAAMTRVLNKYINDHEVAKKAKVETSGDDMREGLSCVLSVK 349

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + EP+F+ QTK KLVS + +  VE+ +    + +L++ P +A  +   +++ +  R   R
Sbjct: 350 VPEPKFSAQTKDKLVSSEVRAPVEDVVAKALEEFLLETPNDAKIICSKIVDAARARDAAR 409

Query: 434 KQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           K RE+ R+   +  + LPGKLADC +     +E++IVEGDSAGGSAKQ R+R  QA+LPL
Sbjct: 410 KAREMTRRKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPL 469

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHI 551
           RGK+LNV  A  +K+ +++QI+ L+ ALGC    +    + LRY ++IIMTDADVDGAHI
Sbjct: 470 RGKVLNVEKARYDKLLSSEQIVTLITALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHI 529

Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
            +LLLTFFY++M ++IE+ ++++  PPLF+I  G    Y  DE      + +    G
Sbjct: 530 RTLLLTFFYRQMPEMIERGYIYIAQPPLFKIKAGKDERYLKDEAEVNAHILKLALQG 586



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             +  ++      +  I   R+KGLGEM   QL ET MD   R LLRV+I   +      
Sbjct: 737 DFKSAMKWLLADAERNISKQRYKGLGEMNPGQLWETTMDPTVRRLLRVQIEDAI----AA 792

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
                 LMG   + R  FI+  A    ++ 
Sbjct: 793 DGIFTTLMGDDVEPRRAFIESNALRAGNID 822


>gi|215433471|gb|ACJ66701.1| GyrB [Myxococcus fulvus HW-1]
          Length = 815

 Score =  495 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 227/582 (39%), Positives = 331/582 (56%), Gaps = 17/582 (2%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86
            E   +   A       Y   SI  LEG E VR RPGMYIG T    LH L  EV+DNA+
Sbjct: 1   MEKTPATGSAVAPPPVEYGTDSITKLEGREAVRKRPGMYIGDTVAYGLHKLVYEVVDNAV 60

Query: 87  DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146
           DE +AG+   IEV +  +G L+V DNGRGIPV  HPKFP K TLE++LT LHAG KF N 
Sbjct: 61  DESLAGHCTDIEVVIHVDGSLSVQDNGRGIPVGPHPKFPGKDTLEVVLTELHAGSKFGNG 120

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
            Y++SGGLHGVG++ VN LS+   V V R   ++ Q +++GIP SP  +     +KRGT 
Sbjct: 121 AYKVSGGLHGVGVTCVNFLSEWFKVRVQRNGVVYEQSYAQGIPDSPPREVG-TTDKRGTH 179

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F+PD  +      F+   L +  +  A+L+  +      ++   E         F F 
Sbjct: 180 IAFKPDATVMEL-VEFNFETLSQRLRELAFLNAGLHITIRDERTNKEHD-------FKFD 231

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+ ++++   +++  +  +     TE++G    T++ A+ W +     I ++ N I T 
Sbjct: 232 GGISSFVEYLNKSKQTLHDKPIAFSTEREGV---TLDIAMQWNDGYDERIYTFANNINTH 288

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQT 383
           EGG+H SG + ALTR +  YAE     + +      +D       ++SV +  P+F GQT
Sbjct: 289 EGGSHLSGFKAALTRTLNSYAEKGNLWKDLKETPTGEDAREGLSAVISVKLTNPQFEGQT 348

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKT 442
           KTKL + + +  VE  + D    +L + P+ A K++  +          R+ +  V RK 
Sbjct: 349 KTKLGNSEVKGLVEQMVNDQLGSFLEETPMVAKKVVAKIGDACRARLAARKARETVRRKG 408

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
            +    LPGKLADC     + +EL+IVEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A
Sbjct: 409 VLDGGGLPGKLADCQSRDPNESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKA 468

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
             EK+  + +I+ L+ ALG       Y  E  RY ++I+MTDADVDG+HI +LLLTFF++
Sbjct: 469 RFEKMLTSAEIVTLITALGTGIGAEDYDPEKARYHRIILMTDADVDGSHIRTLLLTFFFR 528

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEE 603
           +M +L+++ +L++  PPL+++T+  K  Y  DE    + L +
Sbjct: 529 QMPELLQKGYLYIAQPPLYKVTRNKKDQYVKDEHALNEYLLK 570



 Score =  140 bits (352), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 8/110 (7%)

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PP +++      +     +    +L   +K  +  + + R+KGLGEM   QL +T M+ 
Sbjct: 713 KPP-YKVRVEAGEITVFSVQE---VLAAVRKDAQRGLGLQRYKGLGEMNPEQLWDTTMNP 768

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             RTLL+V +   + S     +  + LMG   + R +FI+  A  + ++ 
Sbjct: 769 ATRTLLQVRVEDAVES----DEIFSLLMGEAVEPRREFIERNALDVQNLD 814


>gi|88705397|ref|ZP_01103108.1| DNA gyrase subunit B [Congregibacter litoralis KT71]
 gi|88700487|gb|EAQ97595.1| DNA gyrase subunit B [Congregibacter litoralis KT71]
          Length = 804

 Score =  495 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 227/570 (39%), Positives = 347/570 (60%), Gaps = 20/570 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANL 96
             AS+NYD S I++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   
Sbjct: 2   SDASENYDGSKIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCAK 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I +++  +  ++V D+GRGIP E H      S  E+ILT LHAGGKFD++TY++SGGLHG
Sbjct: 62  ILITIHPDESVSVQDDGRGIPTEMHD--EGVSAAEVILTVLHAGGKFDDNTYKVSGGLHG 119

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+SVVNALS+EL +T+ R    F Q+++ G+P   L+   +  N+ GT I F+P  + F
Sbjct: 120 VGVSVVNALSEELWLTIWRGGRRFEQRYAHGVPQGALQDVGEA-NQTGTLIRFKPSAETF 178

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   F+   L K  +  A+L+  ++   + ++   E       + +++ GGL  ++   
Sbjct: 179 TNI-EFEFDVLAKRLRELAFLNSGIEILLNDERSGKE-------DRYFYEGGLNAFVDYL 230

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
             N++ +         + +G    +VE A+ W +     I  Y N I   +GGTH +G R
Sbjct: 231 NRNKTPMHKAFHF---QSEGDDGMSVEVALQWNDSYQENIFCYTNNIPQRDGGTHLAGFR 287

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +
Sbjct: 288 SALTRTLNGYIEREGLAKKAKVNTTGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVK 347

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGK 452
             VE A+ + F  YL+++P EA  ++  +++ +  R   RK R    RK A+    LPGK
Sbjct: 348 SAVEQAMNNRFSEYLLESPGEAKAIVTKMLDAARAREAARKAREMTRRKGALDIAGLPGK 407

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +  A  +E+++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++ +
Sbjct: 408 LADCQEKDASLSEIYLVEGDSAGGSAKQGRNRRFQAILPLKGKILNVEKARFDKMLSSVE 467

Query: 513 IMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +  LV ALGC   + ++  + LRY  +IIMTDADVDG+HI +LLLTFF+++M +LI++ H
Sbjct: 468 VGTLVTALGCGIGKEEFDPDKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMRELIDRGH 527

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +F+  PPL+++ +G +  Y  D+    + L
Sbjct: 528 VFIAQPPLYKVGKGKQHQYLKDDAALAEFL 557



 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 4/85 (4%)

Query: 601 LEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660
           LE      +    I R+KGLGEM   QL ET MD   R +L+V ++  +       +   
Sbjct: 723 LEWLMAEARRGYYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTVDDAMR----ADEIFT 778

Query: 661 KLMGTKADERFKFIQERASFIDDVG 685
            LMG + + R +FI+E A ++ ++ 
Sbjct: 779 TLMGDQVEPRREFIEENALYVSNLD 803


>gi|269303150|gb|ACZ33250.1| DNA gyrase, B subunit [Chlamydophila pneumoniae LPCoLN]
          Length = 805

 Score =  495 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 230/580 (39%), Positives = 338/580 (58%), Gaps = 18/580 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
               NYDAS+I +LEGL+ VR RPGMYIG T    LHHL  EV+DN++DE +AGY + I+
Sbjct: 3   PKEKNYDASAITVLEGLQAVRERPGMYIGDTGITGLHHLVYEVVDNSIDEAMAGYCSRID 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHP-----KFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           V +  +G + +VDNGRGIP+E H      +    S LE++LT LHAGGKFD  +Y++SGG
Sbjct: 63  VRILEDGGIVIVDNGRGIPIEVHERESAKQGREVSALEVVLTVLHAGGKFDKDSYKVSGG 122

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+S VNALS++L  TV +    +  +FSRGIP++PLE      +++GT I F PDP
Sbjct: 123 LHGVGVSCVNALSEKLVATVFKDKKCYQMEFSRGIPVTPLE-YVSASDRQGTEIVFYPDP 181

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           KIF     FD + L+K  +  A+L+  +   +  D++++          F++ GG+++++
Sbjct: 182 KIFST-CTFDRSILMKRLRELAFLNRGITIVFEDDRDVSFDKVT-----FFYEGGIQSFV 235

Query: 274 QTKLENRSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHE 331
               +N+  + SE       + G       E A+ W     E + SY N I T +GGTH 
Sbjct: 236 SYLNQNKESLFSEPIYICGTRVGDDGEIEFEAALQWNSGYSELVYSYANNIPTRQGGTHL 295

Query: 332 SGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G   ALTR I  Y +     +     +  +D+      ++SV +  P+F GQTK KL +
Sbjct: 296 TGFATALTRVINTYIKAHNLAKNNKLALTGEDIREGLTAVISVKVPNPQFEGQTKQKLGN 355

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN-RKTAIRKLR 448
            D     +  + +    +  +NP  A  +++ V   ++ R   +K RE+  RK+A+   R
Sbjct: 356 SDVSSVAQQVVGEALTIFFEENPQIARMIVDKVFVAAQAREAAKKARELTLRKSALDSAR 415

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKL DC +      E++IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  +KI 
Sbjct: 416 LPGKLIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKIF 475

Query: 509 NNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
            NQ+I  ++ ALGC   +       LRY ++IIMTDADVDG+HI +LLLTFFY+ M  LI
Sbjct: 476 QNQEIGTIIAALGCGIGADNFNLSKLRYRRIIIMTDADVDGSHIRTLLLTFFYRHMTALI 535

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607
           E + +++  PPL+++++     Y   E+     L     +
Sbjct: 536 ENECVYIAQPPLYKVSKKKDFRYILSEKEMDSYLLMLGTN 575



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 9/99 (9%)

Query: 589 VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648
              +     ++++   K  G+  IEI R+KGLGEM A QL +T M+  +RTL+RV +   
Sbjct: 713 YSCYT---LEEVINYLKNLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLIRVSLKDA 769

Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFI--DDVG 685
           +    +       LMG +   R +FI+  A  I  +++ 
Sbjct: 770 V----EADHIFTMLMGEEVPPRREFIESHALSIRMNNLD 804


>gi|62185121|ref|YP_219906.1| DNA gyrase subunit B [Chlamydophila abortus S26/3]
 gi|62148188|emb|CAH63945.1| DNA gyrase subunit B [Chlamydophila abortus S26/3]
          Length = 806

 Score =  495 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 229/578 (39%), Positives = 335/578 (57%), Gaps = 18/578 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +   NYDAS+I +LEGL+ VR RPGMYIG T    LHHL  EV+DN++DE +AGY + I 
Sbjct: 3   AKEKNYDASAITVLEGLQAVRERPGMYIGDTGITGLHHLVYEVVDNSIDEAMAGYCSEIH 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNK-----STLEIILTTLHAGGKFDNSTYEISGG 153
           V +  +G +T+ DNGRGIP++ H K   K     S LE++LT LHAGGKFD  +Y++SGG
Sbjct: 63  VRILEDGGITISDNGRGIPIQTHEKESKKQGRDVSALEVVLTVLHAGGKFDKDSYKVSGG 122

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+S VNAL+++L  TV +    +  +FSRG+P++ L+       + GT ITF PD 
Sbjct: 123 LHGVGVSCVNALAEKLVATVYKDKQAYQMEFSRGVPVTSLQCLGATNKQ-GTEITFYPDN 181

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           KIF     FD + L+K  +  A+L+  V   +  D++++      +K  F++ GG+++++
Sbjct: 182 KIFSSCV-FDRSILIKRLRELAFLNRGVTIIFEDDRDVS-----FDKVVFFYEGGIQSFV 235

Query: 274 QTKLENRSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHE 331
               +N+  +  E       + G       E A+ W     E I SY N I T +GGTH 
Sbjct: 236 SYLNQNKESLFPEPIYISGSRTGDDGEIEFEAALQWNSGYSELIYSYANNIPTRQGGTHL 295

Query: 332 SGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G   ALTR +  Y +     +     +  +D+      ++SV +  P+F GQTK KL +
Sbjct: 296 TGFSTALTRVLNAYIKAHNLAKNDKLSLTGEDIREGLTAVVSVKVPNPQFEGQTKQKLGN 355

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN-RKTAIRKLR 448
            D     +    +    +  +NP  A  +++ V   ++ R   +K RE+  RK+A+   R
Sbjct: 356 SDVGSVSQQITGEALTIFFDENPQIAKMIVDKVFIAAQAREAAKKARELTLRKSALDSAR 415

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKL DC +      E++IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  +KI 
Sbjct: 416 LPGKLIDCLEKDPAKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKIF 475

Query: 509 NNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
            NQ+I  ++ ALGC   S       LRY ++IIMTDADVDG+HI +LLLTFFY+ M  LI
Sbjct: 476 QNQEIGTIIAALGCGIGSDNFNLSKLRYRRIIIMTDADVDGSHIRTLLLTFFYRHMTALI 535

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605
           E + +++  PPL+++++     Y   E+     L    
Sbjct: 536 ENECVYIAQPPLYKVSKKKDFRYILSEKEMDDYLLTLG 573



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 6/96 (6%)

Query: 592 HDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651
           +     ++++E  K  G+  IEI R+KGLGEM A QL +  M+  +RTL+RV +   +  
Sbjct: 714 YTCYTLKEVIEHLKALGRKGIEIQRYKGLGEMNADQLWDITMNPEQRTLVRVSLKDAV-- 771

Query: 652 LKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685
             +       LMG +   R +FI+  A  +   ++ 
Sbjct: 772 --EADHIFTMLMGEEVPPRREFIENHALSVKMNNLD 805


>gi|319780074|ref|YP_004139550.1| DNA gyrase, subunit beta [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317165962|gb|ADV09500.1| DNA gyrase, B subunit [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 823

 Score =  495 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 230/580 (39%), Positives = 339/580 (58%), Gaps = 24/580 (4%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYA 94
            N  A   Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+A
Sbjct: 7   NNNGAEAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHA 66

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           +L+ V+L+ +G +TV+DNGRGIP + H      S  E+I+T LHAGGKFD ++Y++SGGL
Sbjct: 67  DLVTVTLNPDGSVTVIDNGRGIPTDIH-TGEGISAAEVIMTQLHAGGKFDQNSYKVSGGL 125

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL---------SPLEKKEKVRNKRGT 205
           HGVG+SVVNALS  L + + R   IF   F+ G               ++      + G+
Sbjct: 126 HGVGVSVVNALSAWLKLKIRRNGQIFEMSFTHGNADAPLKATGTYEQDKQPGTYEGRSGS 185

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           +ITF P  + F     FD   L    +  A+L+  V+   +  +              ++
Sbjct: 186 QITFFPSAETFT-MVEFDFGTLEHRLRELAFLNSGVRIILTDARHADVVRHE-----LHY 239

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILT 324
            GGL+ +++     +  +  +    + E+ G    TVE A+ W +   E   ++ N I  
Sbjct: 240 DGGLEEFVKYLDRVKKPLIDKPIAIRAERDGI---TVEVAMWWNDSYHENVLAFTNNIPQ 296

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTR I  Y E +    K  +S+I DD       +LSV + +P+F+ Q
Sbjct: 297 RDGGTHLAGFRGALTRQITGYGESSGLTKKEKVSLIGDDCREGLTAVLSVKVPDPKFSSQ 356

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK KLVS + +  VE  + +    +L ++P E   +++ VI+ +  R   RK R++ RK+
Sbjct: 357 TKDKLVSSEVRPVVEGLVNEALGTWLEEHPSEGKVVVDKVIQAAAAREAARKARDITRKS 416

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           ++    LPGKLADC +     +E+FIVEGDSAGGSAK  R+R NQA+LPLRGKILNV  A
Sbjct: 417 SLGVTSLPGKLADCQERDPAKSEIFIVEGDSAGGSAKGGRSRQNQAILPLRGKILNVERA 476

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
             +++  +  I  L+ ALG          + LRY K+I+MTDADVDGAHI +LLLTFF++
Sbjct: 477 RFDRMLGSDMIGTLITALGTSIGKDEFNADKLRYHKIILMTDADVDGAHIRTLLLTFFFR 536

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +M +LIE+ HL++  PPL+++T+G  S Y  DE   ++ L
Sbjct: 537 QMPELIERGHLYIAQPPLYKVTRGKSSQYIKDESAFEEFL 576



 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L      G+  + + R+KGLGEM A QL ET +D N R+LL+V++N       D    
Sbjct: 740 AMLNAVFATGRKGLTMQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVNDAT----DADSL 795

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            ++LMG + + R +FIQ+ A  + ++ 
Sbjct: 796 FSRLMGDEVEPRREFIQDNALSVANLD 822


>gi|310817572|ref|YP_003949930.1| DNA gyrase subunit B [Stigmatella aurantiaca DW4/3-1]
 gi|309390644|gb|ADO68103.1| DNA gyrase, B subunit [Stigmatella aurantiaca DW4/3-1]
          Length = 817

 Score =  495 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 229/610 (37%), Positives = 341/610 (55%), Gaps = 24/610 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86
            +   S           Y A SI  LEG E VR RPGMYIG T    LH L  EV+DNA+
Sbjct: 1   MDKTPSTGATPAPLPVEYGAESITKLEGREAVRKRPGMYIGDTMTYGLHKLVYEVVDNAV 60

Query: 87  DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENH--PKFPNKSTLEIILTTLHAGGKFD 144
           DE +AGY   I V +  +G L+V DNGRGIPV  H  PKF +K T++++LT LHAG KF 
Sbjct: 61  DEALAGYCTEISVDIHVDGSLSVQDNGRGIPVGPHPDPKFHDKDTVDVVLTELHAGSKFG 120

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           N  Y++SGGLHGVG++ VN LS+ L V + R   ++ Q +SRGIP   +++     +KRG
Sbjct: 121 NGAYKVSGGLHGVGVTCVNFLSEWLKVRIQRNGKVYEQSYSRGIPDGKVKEVG-TTDKRG 179

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F+PD ++      FD   L +  +  A+L+  +      ++   E         F 
Sbjct: 180 TLVWFKPDTQVMEA-VDFDFETLSQRLRELAFLNAGLHISIRDERTNKEHE-------FK 231

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           F GG+ ++++   +++  +  +    +TEK+G    ++E A+ W +     I ++ N I 
Sbjct: 232 FDGGIGSFVEYLNKSKQALHDKPIFVRTEKEGV---SLELAMQWNDGYDERIYTFANNIN 288

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAG 381
           T EGG+H SG + ALTR +  YAE +   + +      +D       ++SV +  P+F G
Sbjct: 289 THEGGSHLSGFKAALTRTLNSYAEKSGLWKDLKETPTGEDAREGLAAVISVKLSNPQFEG 348

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNR 440
           QTKTKL + + +  VE  + D    YL +NP    K++  +          R+ +  V R
Sbjct: 349 QTKTKLGNSEIKGLVEQMVNDQLATYLEENPSNGKKVVAKIGDACRARIAARKARETVRR 408

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K  +    LPGKLADC       +EL+IVEGDSAGGSAKQ R+R NQA+LPLRGKILNV 
Sbjct: 409 KGILDGGGLPGKLADCQSRDPKESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVE 468

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDADVDGAHIASLLLTFF 559
            A  EK+  + +I+ L+ ALG    ++  +    RY ++I+MTDADVDG+HI +LLLTFF
Sbjct: 469 KARFEKMLTSAEIITLITALGTGIGAEDYDPAKARYNRIILMTDADVDGSHIRTLLLTFF 528

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
           +++M +L++  +L++  PPL+++T+  K +Y  DE    + L          +  +    
Sbjct: 529 FRQMRELLDLGYLYIAQPPLYKVTRNKKDLYVKDERALNEYLLRIAAEHSRVVTPN---- 584

Query: 620 LGEMLASQLK 629
            GE+  S+LK
Sbjct: 585 -GELGGSELK 593



 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 8/110 (7%)

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PP + +      V A   +    +L   +K  +  + + R+KGLGEM   QL +T M+ 
Sbjct: 715 RPP-YTVKVDGGEVTAFSVQE---VLAVVRKDAQKGLGLQRYKGLGEMNPEQLWDTTMNP 770

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             RTLL+V++   + S        + LMG   + R +FI+  A  + ++ 
Sbjct: 771 ATRTLLQVQLKDAVES----DGIFSLLMGEAVEPRREFIERNALDVQNLD 816


>gi|302381122|ref|YP_003816945.1| DNA gyrase subunit beta [Brevundimonas subvibrioides ATCC 15264]
 gi|302191750|gb|ADK99321.1| DNA gyrase, B subunit [Brevundimonas subvibrioides ATCC 15264]
          Length = 815

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 230/594 (38%), Positives = 344/594 (57%), Gaps = 22/594 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85
            + P     A+ +    Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA
Sbjct: 2   TDEPIHERTADNAEEAAYGAESIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNA 61

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AG+A+L+EV L+ +G +TV DNGRGIPV+ H +    S  E+I+T LHAGGKFD 
Sbjct: 62  IDEALAGHADLVEVILNADGSVTVTDNGRGIPVDIHAE-EGVSAAEVIMTQLHAGGKFDQ 120

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------ 199
           ++Y++SGGLHGVG+SVVNALSD L + + R       KF RG  +  L    +       
Sbjct: 121 NSYKVSGGLHGVGVSVVNALSDWLKLVIFRNGQRHEMKFERGDTVESLRVTGEAPMRENG 180

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
           +   GT++TF P    F     FD   L    +  A+L+  V       +        P 
Sbjct: 181 KVLSGTQVTFYPSVTTFA-HIDFDLKTLEHRLRELAFLNSGVVIKLQDHR-----GVEPF 234

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
           +E  ++ GG++ +++   ++++ I  ++   + ++       ++ A+ W +     +  +
Sbjct: 235 EEILHYEGGVEAFVRHLDKSKTPILKDVIVIRGKRDNI---EIDLALWWNDSYHETMLCF 291

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH S  R +LT+ +  Y E +    K  ++   +D       +LSV + +
Sbjct: 292 TNNIPQRDGGTHLSAFRTSLTKVMGAYMESSGALKKEKVAPTGEDAREGLTCVLSVKVPD 351

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F+ QTK KLVS + +  VE    D  + +  ++P+EA  ++  +IE +  R   RK R
Sbjct: 352 PKFSSQTKDKLVSSEVRPAVEGLCTDGLNQWFEEHPVEAKAVVAKIIEAASAREAARKAR 411

Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           +   RK+A+    LPGKLADC +     +ELFIVEGDSAGGSAKQARNR NQAVLPLRGK
Sbjct: 412 DLTRRKSALDISSLPGKLADCQERDPAKSELFIVEGDSAGGSAKQARNRENQAVLPLRGK 471

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASL 554
           ILNV  A  +++ +++ I  L+ ALG          + LRY K+I+M DADVDGAHI +L
Sbjct: 472 ILNVERARFDRMLSSELIGTLILALGTGIGRDDFNADKLRYHKIILMADADVDGAHIRTL 531

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           LLTFFY++M +LIE+ H+F+  PPL+++++G +S Y  D+      L E     
Sbjct: 532 LLTFFYRQMPELIERGHVFIAQPPLYKVSKGKQSRYLKDQSEMDSYLIEEGSSD 585



 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 35/83 (42%), Positives = 45/83 (54%), Gaps = 4/83 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L      GK  + I R+KGLGEM   QL ET +DAN RTLLRV+++       D  D 
Sbjct: 733 DLLNAVLDQGKKGLAIQRYKGLGEMNPEQLWETTLDANARTLLRVQVDH----ADDADDL 788

Query: 659 INKLMGTKADERFKFIQERASFI 681
             KLMG   + R +FIQ+ A   
Sbjct: 789 FAKLMGDVVEPRREFIQDNALDA 811


>gi|209966328|ref|YP_002299243.1| DNA gyrase, B subunit, putative [Rhodospirillum centenum SW]
 gi|209959794|gb|ACJ00431.1| DNA gyrase, B subunit, putative [Rhodospirillum centenum SW]
          Length = 876

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 241/588 (40%), Positives = 348/588 (59%), Gaps = 26/588 (4%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIA 91
           P     SA++ Y ASSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +A
Sbjct: 7   PDTPPASAAEEYGASSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALA 66

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           GYA+ +EV+L+ +G +TV DNGRGIPV+ HP     S  E+I+T LHAGGKFD ++Y++S
Sbjct: 67  GYADRVEVTLNADGSVTVRDNGRGIPVDIHP-GEGVSAAEVIMTQLHAGGKFDQNSYKVS 125

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR----------N 201
           GGLHGVG+SVVNALS+ L + V R+  ++   F  G  ++PL                  
Sbjct: 126 GGLHGVGVSVVNALSETLFLRVWRKGRVWEMTFRHGDAVAPLADVGAAPVVASGPRAGQP 185

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             GT +TF P  + F     FD   L    +  A+L+  V   ++  +        P+  
Sbjct: 186 LTGTEVTFLPSKQTFTK-TEFDFQTLEHRFRELAFLNSGVLLVFTDAR-----GVEPKVT 239

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK--KGTHRGTVEWAIAWCEEN-PEITSY 318
           E ++ GGL+ ++Q    +++ +       + E+        TVE A+ W +        +
Sbjct: 240 ELFYEGGLEAFVQYLDRSKAALHKPSIAMRGERVSDLGTTVTVEVALQWNDSYHESCLCF 299

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +G R ALTR I KYAE +    K  +++  DD+      +LSV + +
Sbjct: 300 TNNIPQRDGGTHLAGFRAALTRTINKYAEESGILKKEKVALSGDDMREGLTCVLSVKVPD 359

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F+ QTK KLVS + +  VE  + D    +  ++P +A +++  V+E +  R   R+ R
Sbjct: 360 PKFSSQTKDKLVSSEVRPVVETVVADALATWFEEHPADARRIVGKVVEAAAAREAARRAR 419

Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E   RK A+    LPGKLADC +     +ELFIVEGDSAGGSAKQ R+R  QA+LPLRGK
Sbjct: 420 ELTRRKGALDMASLPGKLADCQERDPALSELFIVEGDSAGGSAKQGRSRQFQAILPLRGK 479

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           ILNV  A  +K+ ++ +I  L+ ALG    R ++  +  RY K+IIMTDADVDGAHI +L
Sbjct: 480 ILNVERARFDKMLSSAEIGTLIAALGTGIGREEFDPDKARYHKIIIMTDADVDGAHIRTL 539

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKIL 601
           LLTFFY++M  LIE+ +L++  PPL+R+ +GT K  Y  D+   +  L
Sbjct: 540 LLTFFYRQMPALIERGYLYIAQPPLYRVKRGTAKERYLKDDRQLEDYL 587



 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 4/86 (4%)

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
           +++   + G+  + I R+KGLGEM   QL ET +D   RTLL+V+++       + ++  
Sbjct: 794 LMDAVIEQGRAGLAIQRYKGLGEMNPDQLWETTLDPANRTLLQVKVSH----ADEAEEVF 849

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
           + LMG   + R  FIQE A  + ++ 
Sbjct: 850 STLMGDLVEPRRDFIQENALKVANLD 875


>gi|29840266|ref|NP_829372.1| DNA gyrase subunit B [Chlamydophila caviae GPIC]
 gi|29834614|gb|AAP05250.1| DNA gyrase, subunit B [Chlamydophila caviae GPIC]
          Length = 806

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 230/578 (39%), Positives = 338/578 (58%), Gaps = 18/578 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +   +YDAS+I +LEGL+ VR RPGMYIG T    LHHL  EV+DN++DE +AGY + I 
Sbjct: 3   AKEKSYDASAITVLEGLQAVRERPGMYIGDTGITGLHHLVYEVVDNSIDEAMAGYCSEIY 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNK-----STLEIILTTLHAGGKFDNSTYEISGG 153
           V +  +G +T+ DNGRGIP++ H K   K     S LE++LT LHAGGKFD  +Y++SGG
Sbjct: 63  VRILEDGGITISDNGRGIPIQIHEKESKKQGRDVSALEVVLTVLHAGGKFDKDSYKVSGG 122

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+S VNAL+++L  TV +    +  +FSRG+P++ L+    V +K+GT ITF PD 
Sbjct: 123 LHGVGVSCVNALAEKLVATVYKDKQAYQMEFSRGVPVTALQPLG-VTDKQGTEITFYPDN 181

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           KIF     FD + L+K  +  A+L+  +   +  D++++      +K  F++ GG+++++
Sbjct: 182 KIFSSCV-FDRSILIKRLRELAFLNRGITIVFEDDRDVS-----FDKVVFFYEGGIQSFV 235

Query: 274 QTKLENRSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHE 331
               +N+  +  E       + G       E A+ W     E I SY N I T +GGTH 
Sbjct: 236 SYLNQNKESLFPEPIYISGIRTGDDGDIEFEAALQWNSGYSELIYSYANNIPTRQGGTHL 295

Query: 332 SGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G   ALTR +  Y +     +     +  +D+      ++SV +  P+F GQTK KL +
Sbjct: 296 TGFSTALTRVLNAYIKAHNLAKNDKLSLTGEDIREGLTAVVSVKVPNPQFEGQTKQKLGN 355

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN-RKTAIRKLR 448
            D     +    +    +  +NP  A  ++E V   ++ R   +K RE+  RK+A+   R
Sbjct: 356 SDVGSVSQQITGEALTTFFEENPQIAKMIVEKVFIAAQAREAAKKARELTLRKSALDSAR 415

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKL DC +      E++IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  +KI 
Sbjct: 416 LPGKLIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKIF 475

Query: 509 NNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
            NQ+I  ++ ALGC   S       LRY ++IIMTDADVDG+HI +LLLTFFY+ M  LI
Sbjct: 476 QNQEIGTIIAALGCGIGSDNFNLSKLRYRRIIIMTDADVDGSHIRTLLLTFFYRHMTALI 535

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605
           E + +++  PPL+++++     Y   E+     L    
Sbjct: 536 ENECVYIAQPPLYKVSKKKDFRYILSEKEMDDYLLTLG 573



 Score =  136 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 6/96 (6%)

Query: 592 HDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651
           +     +++++  K  G+  IEI R+KGLGEM A QL +T M+  +RTL+RV +   +  
Sbjct: 714 YTCYTLKEVIDHLKALGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAV-- 771

Query: 652 LKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685
             +       LMG +   R +FI+  A  +   ++ 
Sbjct: 772 --EADHIFTMLMGEEVPPRREFIENHALSVKMNNLD 805


>gi|296282200|ref|ZP_06860198.1| DNA gyrase, B subunit [Citromicrobium bathyomarinum JL354]
          Length = 839

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 221/585 (37%), Positives = 340/585 (58%), Gaps = 27/585 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
             N   +  Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV DNA+DE +AG+
Sbjct: 5   TKNGRNTGEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEALAGH 64

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF----DNSTYE 149
            +L+ + L+ +G + V DNGRGIPV+ H K    S  E+I+T LHAGGKF    D++ Y+
Sbjct: 65  CDLVLIELNPDGSVAVEDNGRGIPVDMH-KGEGVSAAEVIMTQLHAGGKFENTSDDNAYK 123

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-------- 201
           +SGGLHGVG+SVVNALS+ L + + R       +F  G  ++ LE +             
Sbjct: 124 VSGGLHGVGVSVVNALSEWLELVIWRDGKEHWMRFEHGDAVASLEVRGDAPPVDSNGDEN 183

Query: 202 --KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
             K+GTR+TF+     F +   FD  +L    +  A+L+  V       +         +
Sbjct: 184 GLKKGTRVTFKASEDTFKNVTEFDFEKLEHRYRELAFLNSGVHIKLRDRRGEDV-----Q 238

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT-HRGTVEWAIAWCEENPEITSY 318
           + + ++ GG+  ++     N+  +  E  +   EK G      +EW  ++      + ++
Sbjct: 239 EHDLFYEGGIAAFVNYLDRNKDALIPEPISVSAEKDGIGIDVALEWNDSY---YENVLAF 295

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +  R ALTR +  YA  +    K  +S+  +D+      I+SV + +
Sbjct: 296 TNNIPQRDGGTHLAAFRTALTRTLNNYAAASGLLKKEKVSLSGEDMREGLTAIVSVKLPD 355

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F+ QTK KLVS + +  +E+ + D    +L +NP  A  +++ V++ +  R   R+ R
Sbjct: 356 PKFSSQTKDKLVSSEVRSPLESLMGDKMTEWLEENPNHAKAIVQKVVDAAAAREAARRAR 415

Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
           E++RK A+    LPGKLADC +      ELF+VEGDSAGGSAKQ R+R  QA+LPL+GKI
Sbjct: 416 EMSRKGAMSVASLPGKLADCQERDPSKCELFLVEGDSAGGSAKQGRDRKTQAILPLKGKI 475

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556
           LNV  A  ++I +++++  L+QA+G   R  +  E LRY K++IMTDADVDGAHI +LLL
Sbjct: 476 LNVERARFDRIISSKEVGTLIQAMGTGIRDDFNLEKLRYHKIVIMTDADVDGAHIRTLLL 535

Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           TFF++++ ++++  HLF+  PPL+++ +G   VY  DE    + L
Sbjct: 536 TFFHRQLPEIVKNGHLFIAQPPLYKVARGRSEVYLKDERALDRYL 580



 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           ++ +     G+  + + R+KGLGEM A QL ET +D + R LL+V+I         T + 
Sbjct: 756 QLFDAVIAAGRKGLSVQRYKGLGEMNAEQLWETTLDPDNRALLQVKIED----ADVTDEI 811

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            ++LMG   + R +FIQ+ A  + ++ 
Sbjct: 812 FSRLMGDVVETRREFIQDNALNVANLD 838


>gi|254369714|ref|ZP_04985724.1| DNA gyrase subunit B [Francisella tularensis subsp. holarctica
           FSC022]
 gi|157122673|gb|EDO66802.1| DNA gyrase subunit B [Francisella tularensis subsp. holarctica
           FSC022]
          Length = 803

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 229/576 (39%), Positives = 347/576 (60%), Gaps = 19/576 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S +  YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY + I
Sbjct: 2   SENKAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGYCDDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +G ++V DNGRGIP + H K   +S  E+ILT LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  KVIINKDGSVSVSDNGRGIPTDIH-KEEGRSAAEVILTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS++L +T+ R      Q++  G+P  PL++     +K GT ITF+P  + F 
Sbjct: 121 GVSVVNALSEQLKLTIYRNGIEHYQEYVHGVPQFPLKEVGST-DKTGTLITFKPSKETFS 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               FD   L+K  +  ++L+  VK                  E F + GG+  +++   
Sbjct: 180 -FVDFDYDILMKRIRELSFLNSGVKIELIDK-------INNRSEVFKYDGGIVAFVKYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            ++  I   +      K       VE A+ W +     I  + N I   +GGTH SGL+ 
Sbjct: 232 NSKKPIHENVIAVNGIKDDIQ---VELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKA 288

Query: 337 ALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           A+TR +  Y E      K  +++  +D       +LSV + +P+F+ QTK KLVS D + 
Sbjct: 289 AVTRTMNNYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKS 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKL 453
            VE+ + +    +L++NP E+  + E +++ ++ R   RK      RK A+    LPGKL
Sbjct: 349 AVESLVNEKLQEFLLENPKESKIICEKILDSAKAREAARKARDMTRRKGALDIAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +E+++VEGDSAGGSAKQAR+R  QA+LPL+GKILNV  A  +K+  +Q++
Sbjct: 409 ADCQEKDPALSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEV 468

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L++ALGC      Y  +  RY K+I+MTDADVDG+HI +LLLTFFY++M +L+E+ +L
Sbjct: 469 ATLIKALGCGIGTEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYL 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++  PPL+++ +G +  Y  DE+   + L      G
Sbjct: 529 YIAQPPLYKVKKGKQETYLKDEDALAEYLGNIGLEG 564



 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K  Y    +  +  ++   K  +   ++ R+KGLGEM   QL ET MD + R LL
Sbjct: 706 VERGAKKEYV---DDFESAIDWLLKEARKGNDVQRYKGLGEMNPGQLWETTMDPDNRVLL 762

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +    +       LMG + + R  FI+  A  + ++ 
Sbjct: 763 QVSIKDAV----EADALFTTLMGDEVEPRRNFIESNALNVVNLD 802


>gi|126668219|ref|ZP_01739180.1| DNA gyrase subunit B [Marinobacter sp. ELB17]
 gi|126627368|gb|EAZ98004.1| DNA gyrase subunit B [Marinobacter sp. ELB17]
          Length = 804

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 228/575 (39%), Positives = 339/575 (58%), Gaps = 19/575 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
           +   Y++SSI++L+GL+ VR RPGMYIG TD+   LHH+  E++DN++DE +AG+   I 
Sbjct: 2   SESAYNSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFELVDNSIDEALAGHCTEIG 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           + +  +  ++V DNGRGIPV+ H +    S  E+I+T LHAGGKFD++TY++SGGLHGVG
Sbjct: 62  IRIHPDESVSVHDNGRGIPVDLH-EGEGISAAEVIMTVLHAGGKFDDNTYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS  L +T+ R   ++ Q ++ G+P +PL +     +  GT++ F P    F +
Sbjct: 121 VSVVNALSSVLTLTIRRSGKVYEQTYNHGVPAAPLHEVGST-DASGTKVHFIPSEATFTN 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  A+L+  V+   + ++   E       E F + GGL+ +++    
Sbjct: 180 I-KFHYEILAKRVRELAFLNSGVRIRLTDERSGKE-------ELFEYEGGLRAFVEHLNT 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ I+   +  +  + G     VE A+ W +     I  + N I   +GGTH  G R A
Sbjct: 232 NKTPINRVFYFTQQREDGI---EVEVAMQWNDAFQENIYCFTNNIPQRDGGTHLVGFRTA 288

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  +S   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 289 LTRSLNSYIEHEGLGKKAKVSTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 348

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  L   F  YL + P EA  ++  +IE +  R   RK      RK A+    LPGKLA
Sbjct: 349 VEQELYQSFAAYLQEQPSEARLIVNKMIEAARAREAARKARDMTRRKGALDIAGLPGKLA 408

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +ELFIVEGDSAGGSAKQ R R NQA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 409 DCQEKDPALSELFIVEGDSAGGSAKQGRERRNQAILPLKGKILNVEKARFDKMLSSAEVG 468

Query: 515 DLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
           +L+ ALGC    +    E LRY  +IIMTDADVDG+HI +LLLTF +++M ++IE+ H+F
Sbjct: 469 NLITALGCGIGREEFNVEKLRYHSIIIMTDADVDGSHIRTLLLTFLFRQMREVIERGHVF 528

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +  PPL+++ +G +  Y  DE  ++  L +    G
Sbjct: 529 IAMPPLYKVKRGKQEQYLKDENARESYLTQTALEG 563



 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            +  L    K  +  + + R+KGLGEM   QL ET MD   R +++V I           
Sbjct: 719 FEGALAWLMKEAQRGLTLQRYKGLGEMNPEQLWETTMDPESRRMMKVTIADAF----AAD 774

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FIQ  A  + ++ 
Sbjct: 775 QMFTTLMGDDVEPRRNFIQTHALEVTNLD 803


>gi|254442695|ref|ZP_05056171.1| DNA gyrase, B subunit [Verrucomicrobiae bacterium DG1235]
 gi|198257003|gb|EDY81311.1| DNA gyrase, B subunit [Verrucomicrobiae bacterium DG1235]
          Length = 839

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 218/592 (36%), Positives = 330/592 (55%), Gaps = 20/592 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86
                     N     +Y+AS+I+ LEGLE VR RP MYIG T+E+ LHH   EV+DN++
Sbjct: 3   STNESENEPVNYDGDSDYNASNIQKLEGLEGVRKRPDMYIGDTNERGLHHCVFEVVDNSI 62

Query: 87  DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146
           DE +A Y   I+VS+  +G  ++ D+GRGIPV+ HPK+ N   LE++LT LHAGGKF   
Sbjct: 63  DEALASYCKNIKVSIHLDGSCSIEDDGRGIPVDIHPKY-NIPALELVLTNLHAGGKFGKG 121

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
            Y++SGGLHGVG   VNA+S+     V R   I   +FS+G+    L      +   GT+
Sbjct: 122 AYQVSGGLHGVGAKCVNAVSEWFEAEVRRDGKIHQMQFSKGLTTKSLTIIGDTQK-TGTK 180

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I+F+PDP+IF     F    L K  +  A+L+  +      ++   E       E F F 
Sbjct: 181 ISFKPDPEIFQTTLTFQYEILGKRLRELAFLNPGISISLIDERSNKE-------ESFLFV 233

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR---GTVEWAIAWCEEN-PEITSYCNTI 322
            G+  Y++    +++++  +  +     K         V+ ++ + +    +I +Y N+I
Sbjct: 234 DGIAEYIRFLNRSKNVLHEDPISFSDSVKTNEDAPPIGVDVSLQYNDSYNDQIFAYANSI 293

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              EGGTH +G R ALTR + ++A        +  +I  DD     V ++SV + EP F 
Sbjct: 294 FNIEGGTHLTGFRTALTRVVNQFARANNLLKDKDPAITGDDAREGLVAVVSVKVPEPRFE 353

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +    V+  + +   ++   +P  A +L++  +  +  R   RK RE  R
Sbjct: 354 GQTKTKLSNGEVDGIVQKIVGERLKYHFETDPKLAKRLIDKCLNAARAREAARKARETVR 413

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPLRGK++N  
Sbjct: 414 KSALSGGGLPGKLADCSSRKPEESEIYIVEGDSAGGSAKQGRDRRTQAILPLRGKLINSE 473

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQ-----YREEDLRYEKVIIMTDADVDGAHIASLL 555
            A  +K+ +N +I  ++ A+G           +  E  RY K+IIMTDADVDG+HI++LL
Sbjct: 474 KARIDKVLSNNEIRTMITAIGTGIGDSEDGGGFNIEKARYHKIIIMTDADVDGSHISTLL 533

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607
           LTF Y+ M  LIE+ ++++  PPL++I +  +  Y  ++E   +IL E    
Sbjct: 534 LTFLYRHMKGLIERGYVYMAQPPLYKIKRKRREQYIDNDEQLNRILLELGGD 585



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            IL+E +K G+  + I R+KGLGEM   QL ET MD +KR LL+V IN          + 
Sbjct: 756 SILDEIRKSGRKGLSIQRYKGLGEMNPKQLYETTMDVSKRRLLKVNIND----AAKADEL 811

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
              LMG +   R  FI++ A  +  + 
Sbjct: 812 FTILMGEEVAPRRLFIEDNALNVSYLD 838


>gi|169656699|ref|YP_001429063.2| DNA gyrase subunit B [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|164551767|gb|ABU62107.2| DNA gyrase, B subunit [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 805

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 230/576 (39%), Positives = 347/576 (60%), Gaps = 19/576 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S +  YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY + I
Sbjct: 4   SENKAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGYCDDI 63

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +G ++V DNGRGIP + H K   +S  E+ILT LHAGGKFD+++Y++SGGLHGV
Sbjct: 64  KVIINKDGSVSVSDNGRGIPTDIH-KEEGRSAAEVILTVLHAGGKFDDNSYKVSGGLHGV 122

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS++L +T+ R      Q++  G+P  PL++     +K GT ITF+P  + F 
Sbjct: 123 GVSVVNALSEQLKLTIYRNGIEHYQEYVHGVPQFPLKEVGST-DKTGTLITFKPSKETFS 181

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               FD   L+K  +  ++L+  VK                  E F + GG+  +++   
Sbjct: 182 -FVDFDYDILMKRIRELSFLNSGVKIELIDK-------INNRSEVFKYDGGIVAFVKYLN 233

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            ++  I   +      K       VE A+ W +     I  + N I   +GGTH SGL+ 
Sbjct: 234 NSKKPIHENVIAVNGIKDDIQ---VELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKA 290

Query: 337 ALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           A+TR +  Y E      K  +++  +D       +LSV + +P+F+ QTK KLVS D + 
Sbjct: 291 AVTRTMNNYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKS 350

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKL 453
            VE+ + +    +L++NP EA  + E +++ ++ R   RK      RK A+    LPGKL
Sbjct: 351 AVESLVNEKLQEFLLENPKEAKIICEKILDSAKAREAARKARDMTRRKGALDIAGLPGKL 410

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +E+++VEGDSAGGSAKQAR+R  QA+LPL+GKILNV  A  +K+  +Q++
Sbjct: 411 ADCQEKDPALSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEV 470

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L++ALGC      Y  +  RY K+I+MTDADVDG+HI +LLLTFFY++M +L+E+ +L
Sbjct: 471 ATLIKALGCGIGTEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYL 530

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++  PPL+++ +G +  Y  DE+   + L      G
Sbjct: 531 YIAQPPLYKVKKGKQETYLKDEDALAEYLGNIGLEG 566



 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K  Y    +  +  ++   K  +   ++ R+KGLGEM   QL ET MD + R LL
Sbjct: 708 VERGAKKEYV---DDFESAIDWLLKEARKGNDVQRYKGLGEMNPGQLWETTMDPDNRVLL 764

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +    +       LMG + + R  FI+  A  + ++ 
Sbjct: 765 QVSIKDAV----EADALFTTLMGDEVEPRRNFIESNALNVVNLD 804


>gi|71281227|ref|YP_266786.1| DNA gyrase, B subunit [Colwellia psychrerythraea 34H]
 gi|71146967|gb|AAZ27440.1| DNA gyrase, B subunit [Colwellia psychrerythraea 34H]
          Length = 814

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 227/583 (38%), Positives = 347/583 (59%), Gaps = 24/583 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           +  + Y +SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I
Sbjct: 2   TVENEYSSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVLDNSIDEALAGHCTDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF--DNSTYEISGGLH 155
            V++  +G ++V D+GRGIP E HP+    S  E+I+T LHAGGKF  ++S Y++SGGLH
Sbjct: 62  IVTIHLDGSVSVQDDGRGIPTEIHPE-EGISAAEVIMTVLHAGGKFGGEDSGYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVGISVVNALS++L + + R   +F Q +  G+  +PL +   V +K GT + F P    
Sbjct: 121 GVGISVVNALSEKLKLNIRRDGKLFEQFYHIGVAEAPLAEVG-VSDKTGTEVRFWPSTNT 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F D   F    L+K  +  ++L+  V      ++E        +++ F++ GG++ ++  
Sbjct: 180 FTDVL-FHYEILVKRIRELSFLNSGVSIRLIDERE------EGKEDHFHYDGGIQAFVDY 232

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              N++ ++ EIF    E++      VE A+ W +     I  + N I   +GGTH SG 
Sbjct: 233 LNTNKTPVNEEIFYFDLERED--GIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLSGF 290

Query: 335 RVALTRGIKKYAELTQNKRAIS-------IISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           R ALTR +  Y       +             DD       ++SV + +P+F+ QTK KL
Sbjct: 291 RTALTRTLNSYMTKEGLNKTKKGGATETSATGDDAREGLTAVISVKVPDPKFSSQTKDKL 350

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRK 446
           VS + +  VE A+ +    YL++NP  A  ++  +++ +  R   RK RE+ R+   +  
Sbjct: 351 VSSEVKTAVEQAMGEKLGEYLLENPSIARTIIMKIVDAARAREAARKAREMTRRKGVLDI 410

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 411 AGLPGKLADCQEKDPALSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 470

Query: 507 IRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           + ++Q++  L+ ALGC   R +Y  E LRY  +IIMTDADVDG+HI +LLLTFFY++M +
Sbjct: 471 MISSQEVGTLITALGCGIGRDEYNPEKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPE 530

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++E+ H+F+  PPL+++ +G +  Y  D++   + L       
Sbjct: 531 IMERGHIFIAQPPLYKVKKGKQERYIKDDDGLTEYLTTLALDN 573



 Score =  140 bits (352), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K   A    + +  LE      K    I R+KGLGEM   QL ET MD   R +L
Sbjct: 717 VKRGDKVNPA---ANFEDALEWLMAESKRGQYIQRYKGLGEMNPEQLWETTMDPETRRML 773

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG   + R KFI++ A  + ++ 
Sbjct: 774 QVTIEDAI----AADQLFTTLMGDHVEPRRKFIEDNALKVSNLD 813


>gi|89256831|ref|YP_514193.1| DNA gyrase subunit B [Francisella tularensis subsp. holarctica LVS]
 gi|115315217|ref|YP_763940.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella tularensis subsp.
           holarctica OSU18]
 gi|167009278|ref|ZP_02274209.1| DNA gyrase, B subunit [Francisella tularensis subsp. holarctica
           FSC200]
 gi|290954382|ref|ZP_06559003.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312203|ref|ZP_06803005.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella tularensis subsp.
           holarctica URFT1]
 gi|89144662|emb|CAJ79986.1| DNA gyrase subunit B [Francisella tularensis subsp. holarctica LVS]
 gi|115130116|gb|ABI83303.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella tularensis subsp.
           holarctica OSU18]
          Length = 803

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 230/576 (39%), Positives = 347/576 (60%), Gaps = 19/576 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S +  YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY + I
Sbjct: 2   SENKAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGYCDDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +G ++V DNGRGIP + H K   +S  E+ILT LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  KVIINKDGSVSVSDNGRGIPTDIH-KEEGRSAAEVILTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS++L +T+ R      Q++  G+P  PL++     +K GT ITF+P  + F 
Sbjct: 121 GVSVVNALSEQLKLTIYRNGIEHYQEYVHGVPQFPLKEVGST-DKTGTLITFKPSKETFS 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               FD   L+K  +  ++L+  VK                  E F + GG+  +++   
Sbjct: 180 -FVDFDYDILMKRIRELSFLNSGVKIELIDK-------INNRSEVFKYDGGIVAFVKYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            ++  I   +      K       VE A+ W +     I  + N I   +GGTH SGL+ 
Sbjct: 232 NSKKPIHENVIAVNGIKDDIQ---VELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKA 288

Query: 337 ALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           A+TR +  Y E      K  +++  +D       +LSV + +P+F+ QTK KLVS D + 
Sbjct: 289 AVTRTMNNYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKS 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKL 453
            VE+ + +    +L++NP EA  + E +++ ++ R   RK      RK A+    LPGKL
Sbjct: 349 AVESLVNEKLQEFLLENPKEAKIICEKILDSAKAREAARKARDMTRRKGALDIAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +E+++VEGDSAGGSAKQAR+R  QA+LPL+GKILNV  A  +K+  +Q++
Sbjct: 409 ADCQEKDPALSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEV 468

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L++ALGC      Y  +  RY K+I+MTDADVDG+HI +LLLTFFY++M +L+E+ +L
Sbjct: 469 ATLIKALGCGIGTEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYL 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++  PPL+++ +G +  Y  DE+   + L      G
Sbjct: 529 YIAQPPLYKVKKGKQETYLKDEDALAEYLGNIGLEG 564



 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K  Y    +  +  ++   K  +   ++ R+KGLGEM   QL ET MD + R LL
Sbjct: 706 VERGAKKEYV---DDFESAIDWLLKEARKGNDVQRYKGLGEMNPGQLWETTMDPDNRVLL 762

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +    +       LMG + + R  FI+  A  + ++ 
Sbjct: 763 QVSIKDAV----EADALFTTLMGDEVEPRRNFIESNALNVVNLD 802


>gi|118497199|ref|YP_898249.1| DNA gyrase subunit B [Francisella tularensis subsp. novicida U112]
 gi|194323498|ref|ZP_03057275.1| DNA gyrase, B subunit [Francisella tularensis subsp. novicida FTE]
 gi|254372564|ref|ZP_04988053.1| hypothetical protein FTCG_00127 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|118423105|gb|ABK89495.1| DNA gyrase subunit B [Francisella novicida U112]
 gi|151570291|gb|EDN35945.1| hypothetical protein FTCG_00127 [Francisella novicida GA99-3549]
 gi|194322353|gb|EDX19834.1| DNA gyrase, B subunit [Francisella tularensis subsp. novicida FTE]
          Length = 803

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 230/576 (39%), Positives = 347/576 (60%), Gaps = 19/576 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S +  YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY + I
Sbjct: 2   SENKAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGYCDDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +G ++V DNGRGIP + H K   +S  E+ILT LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  KVIINKDGSVSVSDNGRGIPTDIH-KEEGRSAAEVILTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS++L +T+ R      Q++  G+P  PL++     +K GT ITF+P  + F 
Sbjct: 121 GVSVVNALSEQLKLTIYRNGIEHYQEYVHGVPQFPLKEVGST-DKTGTLITFKPSKETFS 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               FD   L+K  +  ++L+  VK                  E F + GG+  +++   
Sbjct: 180 -FVDFDYDILMKRIRELSFLNSGVKIELIDK-------INNRSEIFKYDGGIVAFVKYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            ++  I   +      K       VE A+ W +     I  + N I   +GGTH SGL+ 
Sbjct: 232 NSKKPIHENVIAVNGIKDDIQ---VELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKA 288

Query: 337 ALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           A+TR +  Y E      K  +++  +D       +LSV + +P+F+ QTK KLVS D + 
Sbjct: 289 AVTRTMNNYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKS 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKL 453
            VE+ + +    +L++NP EA  + E +++ ++ R   RK      RK A+    LPGKL
Sbjct: 349 AVESLVNEKLQEFLLENPKEAKIICEKILDSAKAREAARKARDMTRRKGALDIAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +E+++VEGDSAGGSAKQAR+R  QA+LPL+GKILNV  A  +K+  +Q++
Sbjct: 409 ADCQEKDPALSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEV 468

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L++ALGC      Y  +  RY K+I+MTDADVDG+HI +LLLTFFY++M +L+E+ +L
Sbjct: 469 ATLIKALGCGIGAEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYL 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++  PPL+++ +G +  Y  DE+   + L      G
Sbjct: 529 YIAQPPLYKVKKGKQETYLKDEDALAEYLGNIGLEG 564



 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K  Y    +  +  ++   K  +   ++ R+KGLGEM   QL ET MD + R LL
Sbjct: 706 VERGAKKEYV---DDFESAIDWLLKEARKGNDVQRYKGLGEMNPGQLWETTMDPDNRVLL 762

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +    +       LMG + + R  FI+  A  + ++ 
Sbjct: 763 QVSIKDAV----EADALFTTLMGDEVEPRRNFIESNALNVVNLD 802


>gi|212703755|ref|ZP_03311883.1| hypothetical protein DESPIG_01803 [Desulfovibrio piger ATCC 29098]
 gi|212672723|gb|EEB33206.1| hypothetical protein DESPIG_01803 [Desulfovibrio piger ATCC 29098]
          Length = 799

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 220/567 (38%), Positives = 323/567 (56%), Gaps = 19/567 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +YDASSI ILEGL  VR RP MYIG TD + LHHL  EV+DN++DE +AG+   I V 
Sbjct: 6   ASSYDASSITILEGLSAVRKRPAMYIGSTDVRGLHHLVYEVVDNSIDEAMAGFCTRITVI 65

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  +TV D+GRGIPV+ HPK      +++++T LHAGGKFDN++Y++SGGLHGVG+S
Sbjct: 66  LHADNSVTVRDDGRGIPVDIHPK-EGVPAVQVVMTKLHAGGKFDNNSYKVSGGLHGVGVS 124

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
            VNALS+ L VTV R    + Q +SRG+P   L    +  +  GT + F+PD +IF    
Sbjct: 125 CVNALSEWLTVTVRRDGKRYRQHYSRGVPQDQLTVIGEA-DGHGTTVRFQPDEQIFEV-L 182

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L K  +  AYL+  +      ++         E   F+  GG++ ++      +
Sbjct: 183 EFSYDTLKKRFEELAYLNKGLYIECIDER-------TSETHVFHAEGGIRQFVSDLNSGQ 235

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
             I   I              +++   + E    I ++ N I T EGGTH  G R ALTR
Sbjct: 236 QGIHPIIMAEGVVDNVAIDFALQYNAGYKE---TILTFANNIHTKEGGTHLVGFRTALTR 292

Query: 341 GIKKYAEL----TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
            I  Y +     T+  +  ++  DD+      ++SV + +P+F GQTKTKL + +    V
Sbjct: 293 AINGYVKNQPDLTKKLKGTALSGDDVREGLTAVISVKLPQPQFEGQTKTKLGNSEVAGMV 352

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
              + D    Y  +NP +   +++  ++ +  R   R+ +E V RK A+    LPGKLAD
Sbjct: 353 AGMVYDRLTVYFEENPKDIRLIIDKAVDAARARDAARRAKELVRRKGALSDNSLPGKLAD 412

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C       +ELFIVEGDSAGGSAKQ RN  NQA+LPLRGKILN      +K+  N+++  
Sbjct: 413 CQSKDPAESELFIVEGDSAGGSAKQGRNPRNQAILPLRGKILNTERTRFDKMLANKEVKA 472

Query: 516 LVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ A+G     +  + + LRY K+IIMTDADVDGAHI +LLLTFF+++  +++E+ ++++
Sbjct: 473 LITAMGAGIGEEDTDLDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQYQEMVEKGYVYI 532

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKIL 601
             PPL+R+       +  D+    + L
Sbjct: 533 AQPPLYRVHNARMEKFIKDDAELNEFL 559



 Score =  133 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 606 KHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT 665
              +  I I R+KGLGEM   QL  T M+   R LL+V +        +  D+  +LMG 
Sbjct: 723 DEARKGINIQRYKGLGEMNPEQLWVTTMNPENRVLLQVSVEDAN----EASDAFEELMGD 778

Query: 666 KADERFKFIQERASFIDDVG 685
           + + R +FI+  A  + D+ 
Sbjct: 779 RVEPRREFIERNALSVQDLD 798


>gi|167589703|ref|ZP_02382091.1| DNA gyrase subunit B [Burkholderia ubonensis Bu]
          Length = 824

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 236/594 (39%), Positives = 337/594 (56%), Gaps = 33/594 (5%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94
             Q  + +Y ASSI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +AGY 
Sbjct: 6   NTQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYC 65

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVE--NHPKFP-NKSTLEIILTTLHAGGKFDNSTYEIS 151
           N I V +  +  ++V DNGRGIP +   + K    +S  EI++T LHAGGKFD ++Y++S
Sbjct: 66  NDIHVIIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQNSYKVS 125

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKV 199
           GGLHGVG+S VNALS  L +TV R       +F RG+             +SP++     
Sbjct: 126 GGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVIETVDGVEVSPMQLIGDT 185

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            N RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E      
Sbjct: 186 EN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD---- 239

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              F F GG+K +++   + +S +   IF    EK G     VE A+ W +     +  +
Sbjct: 240 ---FAFAGGVKGFVEFINKTKSTLHPTIFHVNGEKDGV---GVEVAMQWNDSYNENVLCF 293

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + E
Sbjct: 294 TNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLSCVLSVKVPE 353

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F+ QTK KLVS + +  VE  +    + +L++ P +A  +   ++E +  R   RK R
Sbjct: 354 PKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKAR 413

Query: 437 EVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK
Sbjct: 414 EMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGK 473

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASL 554
           +LNV  A  +K+ +++QI+ LV ALGC         + LRY ++IIMTDADVDGAHI +L
Sbjct: 474 VLNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTL 533

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           LLTF Y++M D+IE+ ++++  PPL++I  G    Y  D+      +      G
Sbjct: 534 LLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDSELNAHMLRLALQG 587



 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             +  ++      +  +   R+KGLGEM   QL ET MD   R LLRV+I   +      
Sbjct: 738 DFKSAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMDPAVRRLLRVQIEDAI----AA 793

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
                 LMG + + R  FI+  A    ++ 
Sbjct: 794 DGIFTTLMGDEVEPRRAFIESNALRAGNID 823


>gi|15618195|ref|NP_224480.1| DNA gyrase subunit B [Chlamydophila pneumoniae CWL029]
 gi|15835810|ref|NP_300334.1| DNA gyrase subunit B [Chlamydophila pneumoniae J138]
 gi|16752763|ref|NP_445031.1| DNA gyrase subunit B [Chlamydophila pneumoniae AR39]
 gi|33241617|ref|NP_876558.1| DNA gyrase subunit B [Chlamydophila pneumoniae TW-183]
 gi|6647530|sp|Q9Z8R3|GYRB_CHLPN RecName: Full=DNA gyrase subunit B
 gi|4376548|gb|AAD18424.1| DNA Gyrase Subunit B [Chlamydophila pneumoniae CWL029]
 gi|7189402|gb|AAF38314.1| DNA gyrase, subunit B [Chlamydophila pneumoniae AR39]
 gi|8978649|dbj|BAA98485.1| DNA gyrase subunit B [Chlamydophila pneumoniae J138]
 gi|28415637|dbj|BAC57414.1| DNA Gyrase Subunit B [Chlamydophila pneumoniae]
 gi|33236126|gb|AAP98215.1| DNA gyrase subunit B [Chlamydophila pneumoniae TW-183]
          Length = 805

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 230/580 (39%), Positives = 339/580 (58%), Gaps = 18/580 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
               NYDAS+I +LEGL+ VR RPGMYIG T    LHHL  EV+DN++DE +AGY + I+
Sbjct: 3   PKEKNYDASAITVLEGLQAVRERPGMYIGDTGITGLHHLVYEVVDNSIDEAMAGYCSRID 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHP-----KFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           V +  +G + +VDNGRGIP+E H      +    S LE++LT LHAGGKFD  +Y++SGG
Sbjct: 63  VRILEDGGIVIVDNGRGIPIEVHERESAKQGREVSALEVVLTVLHAGGKFDKDSYKVSGG 122

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+S VNALS++L  TV +    +  +FSRGIP++PL +   V +++GT I F PDP
Sbjct: 123 LHGVGVSCVNALSEKLVATVFKDKKCYQMEFSRGIPVTPL-QYVSVSDRQGTEIVFYPDP 181

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           KIF     FD + L+K  +  A+L+  +   +  D++++          F++ GG+++++
Sbjct: 182 KIFST-CTFDRSILMKRLRELAFLNRGITIVFEDDRDVSFDKVT-----FFYEGGIQSFV 235

Query: 274 QTKLENRSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHE 331
               +N+  + SE       + G       E A+ W     E + SY N I T +GGTH 
Sbjct: 236 SYLNQNKESLFSEPIYICGTRVGDDGEIEFEAALQWNSGYSELVYSYANNIPTRQGGTHL 295

Query: 332 SGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G   ALTR I  Y +     +     +  +D+      ++SV +  P+F GQTK KL +
Sbjct: 296 TGFSTALTRVINTYIKAHNLAKNNKLALTGEDIREGLTAVISVKVPNPQFEGQTKQKLGN 355

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN-RKTAIRKLR 448
            D     +  + +    +  +NP  A  +++ V   ++ R   +K RE+  RK+A+   R
Sbjct: 356 SDVSSVAQQVVGEALTIFFEENPQIARMIVDKVFVAAQAREAAKKARELTLRKSALDSAR 415

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKL DC +      E++IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  +KI 
Sbjct: 416 LPGKLIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKIF 475

Query: 509 NNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
            NQ+I  ++ ALGC   +       LRY ++IIMTDADVDG+HI +LLLTFFY+ M  LI
Sbjct: 476 QNQEIGTIIAALGCGIGADNFNLSKLRYRRIIIMTDADVDGSHIRTLLLTFFYRHMTALI 535

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607
           E + +++  PPL+++++     Y   E+     L     +
Sbjct: 536 ENECVYIAQPPLYKVSKKKDFRYILSEKEMDSYLLMLGTN 575



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 9/99 (9%)

Query: 589 VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648
              +     ++++   K  G+  IEI R+KGLGEM A QL +T M+  +RTL+ V +   
Sbjct: 713 YSCYT---LEEVINYLKNLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLIHVSLKDA 769

Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERAS--FIDDVG 685
           +    +       LMG +   R +FI+  A    I+++ 
Sbjct: 770 V----EADHIFTMLMGEEVPPRREFIESHALSIRINNLD 804


>gi|134302418|ref|YP_001122388.1| DNA gyrase, B subunit [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|224456719|ref|ZP_03665192.1| DNA gyrase, B subunit [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254370164|ref|ZP_04986170.1| DNA topoisomerase [Francisella tularensis subsp. tularensis FSC033]
 gi|254874466|ref|ZP_05247176.1| DNA gyrase B [Francisella tularensis subsp. tularensis MA00-2987]
 gi|134050195|gb|ABO47266.1| DNA gyrase, B subunit [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|151568408|gb|EDN34062.1| DNA topoisomerase [Francisella tularensis subsp. tularensis FSC033]
 gi|254840465|gb|EET18901.1| DNA gyrase B [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282158808|gb|ADA78199.1| DNA gyrase, B subunit [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 803

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 230/576 (39%), Positives = 347/576 (60%), Gaps = 19/576 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S +  YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY + I
Sbjct: 2   SENKAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGYCDDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +G ++V DNGRGIP + H K   +S  E+ILT LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  KVIINKDGSVSVSDNGRGIPTDIH-KEEGRSAAEVILTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS++L +T+ R      Q++  G+P  PL++     +K GT ITF+P  + F 
Sbjct: 121 GVSVVNALSEQLKLTIYRNGIEHYQEYVHGVPQFPLKEVGST-DKTGTLITFKPSKETFS 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               FD   L+K  +  ++L+  VK                  E F + GG+  +++   
Sbjct: 180 -FVDFDYDILMKRIRELSFLNSGVKIELIDK-------INNRSEIFKYDGGIVAFVKYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            ++  I   +      K       VE A+ W +     I  + N I   +GGTH SGL+ 
Sbjct: 232 NSKKPIHENVIAVNGIKDDIQ---VELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKA 288

Query: 337 ALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           A+TR +  Y E      K  +++  +D       +LSV + +P+F+ QTK KLVS D + 
Sbjct: 289 AVTRTMNNYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKS 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKL 453
            VE+ + +    +L++NP EA  + E +++ ++ R   RK      RK A+    LPGKL
Sbjct: 349 AVESLVNEKLQEFLLENPKEAKIICEKILDSAKAREAARKARDMTRRKGALDIAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +E+++VEGDSAGGSAKQAR+R  QA+LPL+GKILNV  A  +K+  +Q++
Sbjct: 409 ADCQEKDPALSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEV 468

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L++ALGC      Y  +  RY K+I+MTDADVDG+HI +LLLTFFY++M +L+E+ +L
Sbjct: 469 ATLIKALGCGIGAEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYL 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++  PPL+++ +G +  Y  DE+   + L      G
Sbjct: 529 YIAQPPLYKVKKGKQETYLKDEDALAEYLGNIGLEG 564



 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K  Y    +  +  ++   K  +   ++ R+KGLGEM   QL ET MD + R LL
Sbjct: 706 VERGAKKEYV---DDFESAIDWLLKEARKGNDVQRYKGLGEMNPGQLWETTMDPDNRVLL 762

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +    +       LMG + + R  FI+  A  + ++ 
Sbjct: 763 QVSIKDAV----EADALFTTLMGDEVEPRRNFIESNALNVVNLD 802


>gi|56707649|ref|YP_169545.1| DNA gyrase subunit B [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110670120|ref|YP_666677.1| DNA gyrase subunit B [Francisella tularensis subsp. tularensis
           FSC198]
 gi|56604141|emb|CAG45143.1| DNA gyrase subunit B [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110320453|emb|CAL08526.1| DNA gyrase subunit B [Francisella tularensis subsp. tularensis
           FSC198]
          Length = 805

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 230/576 (39%), Positives = 347/576 (60%), Gaps = 19/576 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S +  YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY + I
Sbjct: 4   SENKAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGYCDDI 63

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +G ++V DNGRGIP + H K   +S  E+ILT LHAGGKFD+++Y++SGGLHGV
Sbjct: 64  KVIINKDGSVSVSDNGRGIPTDIH-KEEGRSAAEVILTVLHAGGKFDDNSYKVSGGLHGV 122

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS++L +T+ R      Q++  G+P  PL++     +K GT ITF+P  + F 
Sbjct: 123 GVSVVNALSEQLKLTIYRNGIEHYQEYVHGVPQFPLKEVGST-DKTGTLITFKPSKETFS 181

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               FD   L+K  +  ++L+  VK                  E F + GG+  +++   
Sbjct: 182 -FVDFDYDILMKRIRELSFLNSGVKIELIDK-------INNRSEIFKYDGGIVAFVKYLN 233

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            ++  I   +      K       VE A+ W +     I  + N I   +GGTH SGL+ 
Sbjct: 234 NSKKPIHENVIAVNGIKDDIQ---VELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKA 290

Query: 337 ALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           A+TR +  Y E      K  +++  +D       +LSV + +P+F+ QTK KLVS D + 
Sbjct: 291 AVTRTMNNYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKS 350

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKL 453
            VE+ + +    +L++NP EA  + E +++ ++ R   RK      RK A+    LPGKL
Sbjct: 351 AVESLVNEKLQEFLLENPKEAKIICEKILDSAKAREAARKARDMTRRKGALDIAGLPGKL 410

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +E+++VEGDSAGGSAKQAR+R  QA+LPL+GKILNV  A  +K+  +Q++
Sbjct: 411 ADCQEKDPALSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEV 470

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L++ALGC      Y  +  RY K+I+MTDADVDG+HI +LLLTFFY++M +L+E+ +L
Sbjct: 471 ATLIKALGCGIGAEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYL 530

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++  PPL+++ +G +  Y  DE+   + L      G
Sbjct: 531 YIAQPPLYKVKKGKQETYLKDEDALAEYLGNIGLEG 566



 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K  Y    +  +  ++   K  +   ++ R+KGLGEM   QL ET MD + R LL
Sbjct: 708 VERGAKKEYV---DDFESAIDWLLKEARKGNDVQRYKGLGEMNPGQLWETTMDPDNRVLL 764

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +    +       LMG + + R  FI+  A  + ++ 
Sbjct: 765 QVSIKDAV----EADALFTTLMGDEVEPRRNFIESNALNVVNLD 804


>gi|13474326|ref|NP_105894.1| DNA gyrase subunit B [Mesorhizobium loti MAFF303099]
 gi|14025078|dbj|BAB51680.1| DNA gyrase subunit B [Mesorhizobium loti MAFF303099]
          Length = 823

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 230/582 (39%), Positives = 338/582 (58%), Gaps = 24/582 (4%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYA 94
               A   Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+A
Sbjct: 7   NTNGAEAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHA 66

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           +L+ V+L+ +G +TV+DNGRGIP + H      S  E+I+T LHAGGKFD ++Y++SGGL
Sbjct: 67  DLVTVTLNPDGSVTVIDNGRGIPTDIH-TGEGISAAEVIMTQLHAGGKFDQNSYKVSGGL 125

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL---------SPLEKKEKVRNKRGT 205
           HGVG+SVVNALS  L + + R   IF   F+ G               ++      + G+
Sbjct: 126 HGVGVSVVNALSAWLKLKIRRNGQIFEMSFTHGNADAPLRATGSYEQDKQPGTYEGRSGS 185

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            ITF P  + F     FD   L    +  A+L+  V+   +  +              ++
Sbjct: 186 SITFFPSAETFT-MVEFDFGTLEHRLRELAFLNSGVRIILTDGRHADIVRHE-----LHY 239

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILT 324
            GGL+ +++     +  +  +    K E+ G    TVE A+ W +   E   ++ N I  
Sbjct: 240 DGGLEEFVKYLDRVKKPLIEKPIAIKAERDGI---TVEVAMWWNDSYHENVLAFTNNIPQ 296

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTR I  Y E +    K  +S+I DD       +LSV + +P+F+ Q
Sbjct: 297 RDGGTHLAGFRGALTRQITGYGESSGLTKKEKVSLIGDDCREGLTAVLSVKVPDPKFSSQ 356

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK KLVS + +  VE  + +    +L ++P E   +++ VI+ +  R   RK R++ RK+
Sbjct: 357 TKDKLVSSEVRPVVEGLVNEALGTWLEEHPTEGKVVIDKVIQAAAAREAARKARDITRKS 416

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           ++    LPGKLADC +     +E+FIVEGDSAGGSAK  R+R NQA+LPLRGKILNV  A
Sbjct: 417 SLGVTSLPGKLADCQERDPAKSEIFIVEGDSAGGSAKGGRSRQNQAILPLRGKILNVERA 476

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
             +++  +  I  L+ ALG          + LRY K+I+MTDADVDGAHI +LLLTFF++
Sbjct: 477 RFDRMLGSDMIGTLITALGTSIGKDEFNADKLRYHKIILMTDADVDGAHIRTLLLTFFFR 536

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEE 603
           +M +LIE+ HL++  PPL+++T+G  S Y  +E   ++ L E
Sbjct: 537 QMPELIERGHLYIAQPPLYKVTRGKSSQYIKNESAFEEFLIE 578



 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L      G+  + + R+KGLGEM A QL ET +D N R+LL+V++N       D    
Sbjct: 740 ALLNAVFATGRKGLTMQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVNDAT----DADSL 795

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            ++LMG + + R +FIQ+ A  + ++ 
Sbjct: 796 FSRLMGDEVEPRREFIQDNALSVANLD 822


>gi|90415375|ref|ZP_01223309.1| DNA gyrase subunit B [marine gamma proteobacterium HTCC2207]
 gi|90332698|gb|EAS47868.1| DNA gyrase subunit B [marine gamma proteobacterium HTCC2207]
          Length = 804

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 224/569 (39%), Positives = 337/569 (59%), Gaps = 20/569 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           +   NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I
Sbjct: 2   TDEQNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSEI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           ++ +  +  +TV DNGRGIP E H      S  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  KIVIHQDESITVSDNGRGIPTEMHD--EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 119

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS  L +T+ R   +  Q +S G P  PL       +  GT + F P    F 
Sbjct: 120 GVSVVNALSVALRLTIRRNGKVHEQHYSHGEPQGPLTIVGDT-DVSGTEVHFVPSADTFS 178

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V+   + ++   E       E + + GGL+ +++   
Sbjct: 179 NI-KFHFDVLAKRLRELSFLNSGVRIVLADERNGKE-------EVYAYEGGLRAFVEFLN 230

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++  +        GT   +VE A+ W +     I  Y N I   +GGTH +G R 
Sbjct: 231 TNKTTVNKVMHFSTQRDDGT---SVEVALQWNDGFQENIHCYTNNIPQRDGGTHLAGFRS 287

Query: 337 ALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTRG+  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 288 ALTRGLNTYIEKEGINGKAKVATTGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKT 347

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE  + + F  +L++ P +A  ++  +I+ +  R   RK R    RK A+    LPGKL
Sbjct: 348 AVEQEMGEKFTEFLLEFPQDARAVVNKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 407

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++
Sbjct: 408 ADCQEKDPALSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEV 467

Query: 514 MDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC   ++      LRY  V+IMTDADVDG+HI +LLLTFF+++M +L+EQ H+
Sbjct: 468 GTLITALGCGIGAEEFNVTKLRYHTVVIMTDADVDGSHIRTLLLTFFFRQMRELVEQGHI 527

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           F+  PPL+++ +G    Y  D++   + L
Sbjct: 528 FIAQPPLYKVNRGKSEKYVKDDDALLEYL 556



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           + L+      +  I   R+KGLGEM   QL +T MD + R +LRV I   +         
Sbjct: 721 EALDWLMAESRRGISTQRYKGLGEMNPGQLWDTTMDPDVRRMLRVTIEDAI----AADQM 776

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
              LMG + + R  FI+  A  + ++ 
Sbjct: 777 FTTLMGDQVEPRRDFIETNALSVVNLD 803


>gi|241765810|ref|ZP_04763750.1| DNA gyrase, B subunit [Acidovorax delafieldii 2AN]
 gi|241364292|gb|EER59447.1| DNA gyrase, B subunit [Acidovorax delafieldii 2AN]
          Length = 874

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 230/634 (36%), Positives = 343/634 (54%), Gaps = 45/634 (7%)

Query: 11  TLPPQSQGSSEKLKKSGEIPDSPA--FANQSASDNYDASSIRILEGLEPVRMRPGMYIGG 68
              P+   +         +P           AS++Y   +I ILEGLE VR RPGMYIG 
Sbjct: 5   NTQPEPTENGSTGPGEPAMPAVTKIDTNQAGASESYGEGAITILEGLEAVRKRPGMYIGD 64

Query: 69  T-DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKF 124
           T D   LHHL  EV+DN++DE +AG+ + I V++  +  ++V DNGRGIP          
Sbjct: 65  TSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHSDNSISVTDNGRGIPTGVKMDDKHE 124

Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184
           P +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS +L +TV R+  +   +F
Sbjct: 125 PKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKKLRLTVRREGKVHVLEF 184

Query: 185 S------------RGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQ 232
           S             G+ +SP++   +  +KRGT + F PD +IF +   F    L K  +
Sbjct: 185 SKGFVQNRIIETVDGVEVSPMKVTGET-DKRGTEVHFLPDTEIFKENNEFHYEILAKRLR 243

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             ++L+  V+     ++   E         F   GG++ +++   + ++++    F    
Sbjct: 244 ELSFLNNGVRIRLKDERSGKEDD-------FSGAGGVRGFVEFINKGKTVLHPTSFYAAG 296

Query: 293 EKKGTHRGT-------VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKK 344
           E+     G        VE A+ W      ++  + N I   +GGTH +GLR A+TR I K
Sbjct: 297 ERPAETYGGIPGTHIGVEVAMQWNSAYTEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINK 356

Query: 345 YAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRD 402
           Y E  +   K  + +  DD+      +LSV + EP+F+ QTK KLVS + +  VE+ +  
Sbjct: 357 YIEENELAKKAKVEVTGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVGK 416

Query: 403 PFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIA 461
               YL + P +A  +   ++E +  R   RK RE+ R+   +  + LPGKLADC +   
Sbjct: 417 LLTDYLQEKPNDAKIICGKIVEAARAREAARKAREMTRRKGVLDGMGLPGKLADCQEKDP 476

Query: 462 HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
              E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  EK+  + +I+ L+ ALG
Sbjct: 477 SLCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARYEKLLTSNEILTLITALG 536

Query: 522 CRT--------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
                         +    LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ H++
Sbjct: 537 TGIGKAGGSTGSDDFDVAKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGHIY 596

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607
           +  PPL+++  G + +Y  D       L     +
Sbjct: 597 IAQPPLYKVKAGKEELYLKDAPALDGFLLRIALN 630



 Score =  130 bits (326), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             ++ ++      +      R+KGLGEM   QL ET MD N R LLRV+I+  +    + 
Sbjct: 788 DFRQAMKWLISEAERTTSRQRYKGLGEMNPEQLWETTMDPNVRRLLRVQIDDAI----EA 843

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
                 LMG + + R  FI+  A    ++ 
Sbjct: 844 DRVFTMLMGDEVEPRRDFIETNALRAGNID 873


>gi|323524380|ref|YP_004226533.1| DNA gyrase subunit B [Burkholderia sp. CCGE1001]
 gi|323381382|gb|ADX53473.1| DNA gyrase, B subunit [Burkholderia sp. CCGE1001]
          Length = 823

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 235/599 (39%), Positives = 344/599 (57%), Gaps = 37/599 (6%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIA 91
               N    ++Y ASSI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +A
Sbjct: 2   TETNNTQPDNSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPV-----ENHPKFPNKSTLEIILTTLHAGGKFDNS 146
           GY N I+V +  +  +++ DNGRG+P      + H   P +S  EI++T LHAGGKFD +
Sbjct: 62  GYCNDIQVIIHADNSISITDNGRGVPTGLKMDDKHE--PKRSAAEIVMTELHAGGKFDQN 119

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLE 194
           +Y++SGGLHGVG+S VNALS  L +TV R       +F RG+P             SP++
Sbjct: 120 SYKVSGGLHGVGVSCVNALSAWLRLTVRRDGKKHFMEFHRGVPQNRVLEEIDGVMTSPMQ 179

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
                 N RGT + F  D  IFG+   +    L K  +  ++L+  V+      +   E 
Sbjct: 180 VVGDTEN-RGTEVHFMADETIFGNV-EYHYDILAKRIRELSFLNNGVRIRLLDQRSGKE- 236

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313
                 E+F F GG+K +++   + +S++   IF    EK G     VE A+ W +    
Sbjct: 237 ------EDFAFVGGVKGFVEYINKTKSVLHPTIFHITGEKDGV---GVEVAMQWNDSYNE 287

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
            +  + N I   +GGTH +GLR A+TR + KY    +   K  +    DD+      +LS
Sbjct: 288 NVLCFTNNIPQRDGGTHLTGLRAAMTRVLNKYIADHEVAKKAKVETSGDDMREGLSCVLS 347

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V + EP+F+ QTK KLVS + +  VE  +    + +L++ P +A  +   +++ +  R  
Sbjct: 348 VKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICSKIVDAARARDA 407

Query: 432 RRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            RK RE+ R+   +  + LPGKLADC +     +E++IVEGDSAGGSAKQ R+R  QA+L
Sbjct: 408 ARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAIL 467

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGA 549
           PLRGK+LNV  A  +K+ +++QI+ L+ ALGC    +    E LRY ++IIMTDADVDGA
Sbjct: 468 PLRGKVLNVEKARYDKLLSSEQIVTLITALGCGIGKEDYNLEKLRYHRIIIMTDADVDGA 527

Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           HI +LLLTFFY++M ++IE+ ++++  PPL++I  G    Y  DE      + +    G
Sbjct: 528 HIRTLLLTFFYRQMPEMIERGYIYIAQPPLYKIKAGKDERYLKDETEVNAHILKLALQG 586



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             +  ++      +  +   R+KGLGEM   QL ET MD   R LLRV+I   +      
Sbjct: 737 DFKSAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMDPAVRRLLRVQIEDAI----AA 792

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
                 LMG   + R  FI+  A    ++ 
Sbjct: 793 DGIFTTLMGDDVEPRRAFIESNALRAGNID 822


>gi|83642921|ref|YP_431356.1| DNA gyrase subunit B [Hahella chejuensis KCTC 2396]
 gi|83630964|gb|ABC26931.1| DNA gyrase, B subunit [Hahella chejuensis KCTC 2396]
          Length = 805

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 222/559 (39%), Positives = 336/559 (60%), Gaps = 19/559 (3%)

Query: 49  IRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFL 107
           I++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGY   +++++  +  +
Sbjct: 12  IKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKEVKITIHADESI 71

Query: 108 TVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSD 167
           TV D+GRGIPV+ H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS 
Sbjct: 72  TVSDDGRGIPVDIHEEM-GVSAAEVIMTMLHAGGKFDDNSYKVSGGLHGVGVSVVNALSK 130

Query: 168 ELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARL 227
           EL +T+ R N +  Q +  G+P +PL    +  ++ GT + F P  + F +   F    L
Sbjct: 131 ELRLTIRRDNKVHEQVYKHGVPQAPLSVVGET-DRSGTEVHFFPSAETFNNI-EFHYDIL 188

Query: 228 LKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEI 287
            K  +  A+L+  VK     ++         + E F + GGL+ +++   + ++ I+   
Sbjct: 189 AKRLRELAFLNSGVKITLHDERSA-------KTETFEYEGGLRAFVEYLNQTKNPINKVF 241

Query: 288 FTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYA 346
              K  + GT    VE ++ W +     I  + N I   +GGTH +G R ALTR +  Y 
Sbjct: 242 HFLKEREDGT---AVEVSLQWNDSFQENIFCFTNNIPQRDGGTHLAGFRAALTRSLNSYI 298

Query: 347 EL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF 404
           E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  VE  +   F
Sbjct: 299 EKESMLKKTKVATSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNAYF 358

Query: 405 DHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHG 463
             +L +NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLADC +     
Sbjct: 359 ADFLAENPQDAKNVVNKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPAL 418

Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523
           +EL+IVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++  L+ ALGC 
Sbjct: 419 SELYIVEGDSAGGSAKQGRDRKTQAILPLKGKILNVEKARFDKMLSSAEVGTLITALGCG 478

Query: 524 TRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI 582
              +  +   LRY  +IIMTDADVDG+HI +LLLTFF+++M ++IE  H+F+  PPL+++
Sbjct: 479 IGREEFDVNKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMREIIENGHVFIAMPPLYKV 538

Query: 583 TQGTKSVYAHDEEHKQKIL 601
            +G +  Y  DE+  Q+ L
Sbjct: 539 KRGKQEQYVKDEKALQQYL 557



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K+      E     L    K  +  + I R+KGLGEM   QL ET MD   R ++
Sbjct: 708 VKRGEKTQAI---ETFDDSLVWLMKEAQRGLNIQRYKGLGEMNPEQLWETTMDPAVRRMM 764

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +          N LMG   + R  FIQ  A  + ++ 
Sbjct: 765 KVTIEDAI----AADQIFNTLMGDDVEPRRDFIQTNALSVMNLD 804


>gi|187932024|ref|YP_001892009.1| DNA gyrase, B subunit [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|187712933|gb|ACD31230.1| DNA gyrase, B subunit [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 803

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 230/576 (39%), Positives = 347/576 (60%), Gaps = 19/576 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S +  YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY + I
Sbjct: 2   SENKAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGYCDDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +G ++V DNGRGIP + H K   +S  E+ILT LHAGGKFD+S+Y++SGGLHGV
Sbjct: 62  KVIINKDGSVSVSDNGRGIPTDIH-KEEGRSAAEVILTVLHAGGKFDDSSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS++L +T+ R      Q++  G+P  PL++     ++ GT ITF+P  + F 
Sbjct: 121 GVSVVNALSEQLKLTIYRNGIEHYQEYVHGVPQFPLKEVGST-DETGTLITFKPSKETFS 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               FD   L+K  +  ++L+  VK                  E F + GG+  +++   
Sbjct: 180 -FVDFDYDILMKRIRELSFLNSGVKIELIDK-------INNRSEIFKYDGGIVAFVKYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            ++  I   +      K       VE A+ W +     I  + N I   +GGTH SGL+ 
Sbjct: 232 NSKKPIHENVIAVNGIKDDIQ---VELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKA 288

Query: 337 ALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           A+TR +  Y E      K  +++  +D       +LSV + +P+F+ QTK KLVS D + 
Sbjct: 289 AVTRTMNNYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKS 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKL 453
            VE+ + +    +L++NP EA  + E +++ ++ R   RK      RK A+    LPGKL
Sbjct: 349 AVESLVNEKLQEFLLENPKEAKIICEKILDSAKAREAARKARDMTRRKGALDIAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +E+++VEGDSAGGSAKQAR+R  QA+LPL+GKILNV  A  +K+  +Q++
Sbjct: 409 ADCQEKDPALSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEV 468

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L++ALGC      Y  +  RY K+I+MTDADVDG+HI +LLLTFFY++M +L+E+ +L
Sbjct: 469 ATLIKALGCGIGAEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYL 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++  PPL+++ +G +  Y  DE+   + L      G
Sbjct: 529 YIAQPPLYKVKKGKQETYLKDEDALAEYLGNIGLEG 564



 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K  Y    +  +  ++   K  +   ++ R+KGLGEM   QL ET MD + R LL
Sbjct: 706 VERGAKKEYV---DDFESAIDWLLKEARKGNDVQRYKGLGEMNPGQLWETTMDPDNRVLL 762

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +    +       LMG + + R  FI+  A  + ++ 
Sbjct: 763 QVSIKDAV----EADALFTTLMGDEVEPRRNFIESNALNVVNLD 802


>gi|32490765|ref|NP_871019.1| hypothetical protein WGLp016 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25165971|dbj|BAC24162.1| gyrB [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 803

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 228/564 (40%), Positives = 343/564 (60%), Gaps = 18/564 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           NY +SSI+IL+GLE V+ RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I V++
Sbjct: 4   NYTSSSIKILKGLEAVKKRPGMYIGDTDDGTGLHHMIFEVVDNSIDEALAGFCKKIIVTI 63

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  ++V D+GRGIPV+ H +    S  E+I+T LHAGGKFDN +Y++SGGLHGVGISV
Sbjct: 64  HEDKSISVEDDGRGIPVDIHEE-EGISAAEVIMTVLHAGGKFDNDSYKVSGGLHGVGISV 122

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS++L +T+ R    ++Q ++ G P  PL+K  K R   GT+I F P+  IF     
Sbjct: 123 VNALSEKLELTIYRNGKEYNQNYNFGSPCFPLKKIGKSRK-TGTKIRFWPNLSIFKKNIE 181

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F    L K     ++L+  +       K    K        F++ GG+K +++   +N++
Sbjct: 182 FQYEILFKRLMELSFLNSNISIYLIDIKNNKNK-------HFHYEGGIKEFVKYLHKNKN 234

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I S +F    EK       VE A+ W +     I  + N I   +GG+H  G R A+TR
Sbjct: 235 PIHSNMFYFIKEKDKIL---VEIALQWNDGFKENINCFTNNISQKDGGSHLIGFRSAITR 291

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  Y +      K  +    DD     V I+SV + +P+F+ QTK KLVS + +  VE+
Sbjct: 292 TINSYMDKEGYNKKSKVITTGDDTREGLVAIISVKVPDPKFSSQTKDKLVSSEVKTAVES 351

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCS 457
            L + F  +L++NP ++  ++  +++ +  R   ++ RE+  +K A+  + +PGKLA C 
Sbjct: 352 LLNEQFFIFLLENPKDSKFIVNKILDAARVREAAKRIREMTRKKGALDVIGIPGKLASCQ 411

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           +N     EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+
Sbjct: 412 ENNPSLCELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVGTLI 471

Query: 518 QALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
            ALGC   R +Y  + LRY  +IIMTDAD+DG+HI +LLLTFFY++M ++I++ +LF+  
Sbjct: 472 TALGCGIGRDEYNPDKLRYHCIIIMTDADIDGSHIRTLLLTFFYRQMPEVIDRGYLFIAQ 531

Query: 577 PPLFRITQGTKSVYAHDEEHKQKI 600
           PPL++I  G    Y  ++   +  
Sbjct: 532 PPLYKIKIGKNKKYIKNDNAMENF 555



 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G       + E     L    K  +  + I R+KGLGEM   QL ET M+   R+++
Sbjct: 706 VKKGNNRHNIKNIEEACNWL---LKESRQGMTIQRYKGLGEMNPEQLWETTMNPVSRSMM 762

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +          + LMG   + R  FI++ A  + ++ 
Sbjct: 763 QVTIKDAIV----ADQLFSTLMGDSVEPRKSFIKKNALNVSNID 802


>gi|260463130|ref|ZP_05811332.1| DNA gyrase, B subunit [Mesorhizobium opportunistum WSM2075]
 gi|259030980|gb|EEW32254.1| DNA gyrase, B subunit [Mesorhizobium opportunistum WSM2075]
          Length = 823

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 228/580 (39%), Positives = 337/580 (58%), Gaps = 24/580 (4%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYA 94
               A   Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+A
Sbjct: 7   NTNGAEAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHA 66

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           +L+ V+L+ +G +TV+DNGRGIP + H      S  E+I+T LHAGGKFD ++Y++SGGL
Sbjct: 67  DLVTVTLNPDGSVTVIDNGRGIPTDIH-TGEGISAAEVIMTQLHAGGKFDQNSYKVSGGL 125

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL---------SPLEKKEKVRNKRGT 205
           HGVG+SVVNALS  L + + R   IF   F+ G               ++      + G+
Sbjct: 126 HGVGVSVVNALSAWLKLKIRRNGQIFEMSFTHGNADAPLKVTGAYEQDKQPGTYEGRSGS 185

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            ITF P  + F     FD   L    +  A+L+  V+   +  +              ++
Sbjct: 186 EITFFPSSETFT-MVEFDFGTLEHRLRELAFLNSGVRIVLTDARHADVLRHE-----LHY 239

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILT 324
            GGL+ +++     +  +  +    K E+ G    TVE A+ W +   E   ++ N I  
Sbjct: 240 DGGLEEFVKYLDRVKKPLIDKPIAIKAERDGI---TVEVAMWWNDSYHENVLAFTNNIPQ 296

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTR I  Y + +    K  +S+I DD       +LSV + +P+F+ Q
Sbjct: 297 RDGGTHLAGFRGALTRQITGYGDSSGLTKKEKVSLIGDDCREGLTAVLSVKVPDPKFSSQ 356

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK KLVS + +  VE  + +    +L ++P E   +++ VI+ +  R   RK R++ RK+
Sbjct: 357 TKDKLVSSEVRPVVEGLVNEALGTWLEEHPTEGKVVIDKVIQAAAAREAARKARDITRKS 416

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           ++    LPGKLADC +     +E+FIVEGDSAGGSAK  R+R NQA+LPLRGKILNV  A
Sbjct: 417 SLGVTSLPGKLADCQERDPAKSEIFIVEGDSAGGSAKGGRSRQNQAILPLRGKILNVERA 476

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
             +++  +  I  L+ ALG          + LRY K+I+MTDADVDGAHI +LLLTFF++
Sbjct: 477 RFDRMLGSDMIGTLITALGTSIGKDEFNADKLRYHKIILMTDADVDGAHIRTLLLTFFFR 536

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +M +LIE+ HL++  PPL+++T+G  S Y  +E   ++ L
Sbjct: 537 QMPELIERGHLYIAQPPLYKVTRGKSSQYIKNESAFEEFL 576



 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L      G+  + + R+KGLGEM A QL ET +D N R+LL+V++N       D    
Sbjct: 740 ALLNAVFATGRKGLTMQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVNDAT----DADSL 795

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            ++LMG + + R +FIQ+ A  + ++ 
Sbjct: 796 FSRLMGDEVEPRREFIQDNALSVANLD 822


>gi|332112496|gb|EGJ12289.1| DNA topoisomerase IV subunit B [Rubrivivax benzoatilyticus JA2]
          Length = 657

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 242/664 (36%), Positives = 347/664 (52%), Gaps = 40/664 (6%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y  +SIR+L+GLEPV+ RPGMY   T      H+  EVIDNA DE +AG+   I V+L 
Sbjct: 7   SYAEASIRVLKGLEPVKQRPGMY---TRTDNPLHVVQEVIDNAADEALAGFGKRIAVTLH 63

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST---YEISGGLHGVGI 159
            +G + V D+GRGIP   HP+      LEI+ T LHAGGKFD  +   Y  SGGLHGVG+
Sbjct: 64  ADGSVAVEDDGRGIPFGLHPE-EQVPVLEIVYTRLHAGGKFDKGSGGAYSFSGGLHGVGV 122

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL---EKKEKVRNKRGTRITFRPDPKIF 216
           SV NAL+  L VTV R+    +  F  G  +       K      + GTR+   PDPK F
Sbjct: 123 SVTNALATRLEVTVWREGQCATLAFGNGGEVIEPLAVRKATSSERRHGTRVRVWPDPKYF 182

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                     LL + +SKA L   V    + +K         E + + +  GL+ YL   
Sbjct: 183 ES-PELPRGELLHLLRSKAVLMPGVTVTLATEK-------TGETQTWRYESGLRDYLLQS 234

Query: 277 LENRS----LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHE 331
           L           ++       +         W +A+ +E      SY N I T  GGTHE
Sbjct: 235 LAAEPLIPLFEGAQYAAANETESFAEGEGAAWCVAFTDEGTTLRESYVNLIPTVAGGTHE 294

Query: 332 SGLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           SGL+  L + +K + E      + + ++ +D+   A  +LS  + +P+F GQ K +L S 
Sbjct: 295 SGLKDGLFQAVKGFIELHALLPKGVKLMPEDVFSRASFVLSAKVLDPQFQGQIKERLNSR 354

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
           DA + V + +R   + +L Q+     KL E VI +++ R R  ++ E  + + +  L  P
Sbjct: 355 DALKLVASFVRPALEIWLNQHVEFGKKLAELVIRQAQTRQRAGQKVEKKKGSGVAVL--P 412

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL DC        E+F+VEGDSAGGSAK  R++  QA+LPLRGK+LN      + +  N
Sbjct: 413 GKLTDCESRDLSLNEVFLVEGDSAGGSAKMGRDKETQAILPLRGKVLNSWEVERDLLFKN 472

Query: 511 QQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
            +I D+  ALG        E D   LRY KV I++DADVDG+HI  LLLT F++    LI
Sbjct: 473 NEIHDISVALGVDPHGPADEPDLSGLRYGKVCILSDADVDGSHIQVLLLTLFFRHFPKLI 532

Query: 568 EQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKIEISRFKG 619
           E+ H+++  PPL+RI    +G +    +YA D+   +  L++ +K G  +G   ISRFKG
Sbjct: 533 ERGHVYVARPPLYRIDAPARGKRPAAKLYALDDGELEAALDKLRKEGAREGSWTISRFKG 592

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQERA 678
           LGEM A QL +T ++   R LL V        L +T +   +LMG  +A  R   ++ RA
Sbjct: 593 LGEMNAEQLWDTTLNPETRRLLPVAF--GAPGLDNTVELFTRLMGKGEAQARRDLMELRA 650

Query: 679 SFID 682
             ++
Sbjct: 651 DAVE 654


>gi|190572096|ref|YP_001969941.1| DNA gyrase subunit B [Stenotrophomonas maltophilia K279a]
 gi|190010018|emb|CAQ43623.1| putative DNA gyrase subunit B [Stenotrophomonas maltophilia K279a]
          Length = 819

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 234/583 (40%), Positives = 346/583 (59%), Gaps = 21/583 (3%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVI 90
           S      + + NYDA+SI  LEGLE VR RPGMYIG   D   LHH+  EV+DN++DE +
Sbjct: 2   SDEQNTPANNGNYDANSITALEGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSIDEAL 61

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFP-----NKSTLEIILTTLHAGGKFDN 145
           AG+A+ + V++  +G ++V DNGRGIP   H +         S  E+++T LHAGGKFD+
Sbjct: 62  AGHADHVAVTIHADGSVSVSDNGRGIPTGKHEQMSAKLGREVSAAEVVMTVLHAGGKFDD 121

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +L V V +    + Q+FS G  ++ L K E     RGT
Sbjct: 122 NSYKVSGGLHGVGVSVVNALSQKLLVDVFQNGFHYQQEFSNGAAVTALAKLETTTK-RGT 180

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            + F P    F D   F    L +  +  ++L+  VK   + ++          +++F++
Sbjct: 181 TVRFWPSTVAFHDNVEFHYDILARRLRELSFLNSGVKIVLADERGD------GRRDDFHY 234

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG++++++   + ++ +   + +   E  G     V+ A+ W +     +  + N I  
Sbjct: 235 EGGIRSFVEHLAQLKTPLHPNVISVTGEHNGI---VVDVALQWTDSYQETMYCFTNNIPQ 291

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTR +  Y E     +   I++  DD+    + +LSV + +P F+ Q
Sbjct: 292 KDGGTHLAGFRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQ 351

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TK KLVS D +  VENA     + +L +NP EA  +   +++ +  R   RK R+   RK
Sbjct: 352 TKEKLVSSDVRPAVENAFGARLEEFLQENPNEAKAIAGKIVDAARAREAARKARDLTRRK 411

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            A+    LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR NQAVLPLRGKILNV  
Sbjct: 412 GALDIAGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVER 471

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +++ ++ Q+  L+ ALG    R +Y  + LRY K+IIMTDADVDGAHI +LLLTFFY
Sbjct: 472 ARFDRMLSSDQVGTLITALGTGIGRDEYNPDKLRYHKIIIMTDADVDGAHIRTLLLTFFY 531

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEE 603
           ++M +LIE+ ++++  PPL++I QG + +Y  D+      L  
Sbjct: 532 RQMPELIERGYVYIGLPPLYKIKQGKQELYLKDDPALDSYLAS 574



 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 17/143 (11%)

Query: 549 AHIASLLLTFFYQ------EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILE 602
            HI  L ++ F             +    +   +     I++G KS+        Q  L 
Sbjct: 687 QHIQVLPMSAFESGELRAIHQASKLLHGLVREGAT----ISRGAKSIEVDSFAKAQNWLL 742

Query: 603 EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKL 662
           E  K G+   +I RFKGLGEM   QL +T ++   R LL+V I   +          + L
Sbjct: 743 EEAKRGR---QIQRFKGLGEMNPEQLWDTTVNPETRRLLQVRIEDAV----AADQIFSTL 795

Query: 663 MGTKADERFKFIQERASFIDDVG 685
           MG   + R  FI++ A  + ++ 
Sbjct: 796 MGDVVEPRRDFIEDNALKVANLD 818


>gi|154245817|ref|YP_001416775.1| DNA gyrase, B subunit [Xanthobacter autotrophicus Py2]
 gi|154159902|gb|ABS67118.1| DNA gyrase, B subunit [Xanthobacter autotrophicus Py2]
          Length = 813

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 234/581 (40%), Positives = 342/581 (58%), Gaps = 22/581 (3%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIA 91
                 ++ D+Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +A
Sbjct: 2   AEPVPAASPDDYGAQSIQVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+A  + V+L+ +G +TV D+GRGIP + H K    S  E+I+T LHAGGKF+ ++Y++S
Sbjct: 62  GWAKEVTVTLNADGSVTVTDDGRGIPTDIH-KEEGVSAAEVIMTQLHAGGKFNQNSYKVS 120

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFR 210
           GGLHGVG+SVVNALS  L +T+ R       +F  G   +PL+       +KRGTR+TF 
Sbjct: 121 GGLHGVGVSVVNALSTTLDLTIWRDGKEHFMRFRHGDAEAPLKVVGDAPGDKRGTRVTFT 180

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P P+ F     FD A L    +  A+L+  V    +  +    K      EE ++ GG++
Sbjct: 181 PSPETFTKI-DFDYATLEHRLRELAFLNSGVLIILTDARTADVKR-----EELHYEGGVE 234

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++    ++S +  +    + EK G    TVE A++W +     I  + N I   + GT
Sbjct: 235 AFVKYLDRSKSALLQKPVVIRAEKDG---MTVEAALSWNDGYHENILCFTNNIPQRDRGT 291

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G   ALTR +  YA  +    K  +    +D       +LSV + +P+F+ QTK KL
Sbjct: 292 HFTGFAAALTRQVIGYANTSGIAKKEKVDPTGEDCREGLTAVLSVKVPDPKFSSQTKDKL 351

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
           VS + +  VE+ + +    +  +NP EA  ++  V+E +  R   RK R+   RK+ +  
Sbjct: 352 VSSEVRPVVESLVSEALSVWFEENPAEAKNVIGKVVEAAAAREAARKARDLTRRKSPLDV 411

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +E+FIVEGDSAGGSAKQ R+R+ QAVLPLRGKILNV  A  +K
Sbjct: 412 ASLPGKLADCQERDPAKSEIFIVEGDSAGGSAKQGRDRAFQAVLPLRGKILNVERARFDK 471

Query: 507 IRNNQQIMDLVQALGCRTRSQYREE------DLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           + +++QI  L+ ALG                 LRY K+IIMTDADVDGAHI +LLLTFF+
Sbjct: 472 MLSSEQIGTLITALGTGIGRDDGHSGGFDLAKLRYHKIIIMTDADVDGAHIRTLLLTFFF 531

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++M +L++  HLF+  PPL+++T+G    Y  DE+  +  L
Sbjct: 532 RQMPELVDAGHLFIAQPPLYKVTRGKSETYLKDEKALEDYL 572



 Score =  114 bits (285), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 4/80 (5%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            + +     G+  + + R+KGLGEM   QL ET +D N R+LL+V +      +    D 
Sbjct: 731 DLFDAVTDTGRKGLSLQRYKGLGEMNPEQLWETTLDVNARSLLQVRV----KEVDAADDL 786

Query: 659 INKLMGTKADERFKFIQERA 678
            N+LMG   + R +FIQE A
Sbjct: 787 FNRLMGDTVEPRREFIQENA 806


>gi|94308948|ref|YP_582158.1| DNA gyrase subunit B [Cupriavidus metallidurans CH34]
 gi|93352800|gb|ABF06889.1| DNA gyrase, subunit B [Cupriavidus metallidurans CH34]
          Length = 841

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 228/594 (38%), Positives = 342/594 (57%), Gaps = 36/594 (6%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94
                 ++Y ASSI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +AGY 
Sbjct: 5   QKPQQENSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYC 64

Query: 95  NLIEVSLDGNGFLTVVDNGRGIP--VENHPKFP-NKSTLEIILTTLHAGGKFDNSTYEIS 151
             I+V++  +  +++VDNGRGIP  V+   K    +S  EI +T LHAGGKF+ ++Y++S
Sbjct: 65  TEIQVTIHSDNSISIVDNGRGIPPAVKFDDKHEPKRSAAEIAMTELHAGGKFNQNSYKVS 124

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP----------------LEK 195
           GGLHGVG+S VNALS  L +TV R   +   +F++G   +                   K
Sbjct: 125 GGLHGVGVSCVNALSKWLRLTVRRDGQVNLIEFAKGEVQNRVIETVTGPDGQPVEVSPMK 184

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
                +KRGT + F  D +IF +   F    L K  +  ++L+  V       +      
Sbjct: 185 VIGATDKRGTEVHFLADEEIFTNV-EFHYEVLSKRIRELSFLNNGVHIKLVDQR------ 237

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PE 314
              ++E+F F GG+K +++    +++ +   IF    EK G    +VE A+ W +    +
Sbjct: 238 -TGKEEDFAFSGGVKGFVEYINRSKTTLHPNIFYANAEKDGI---SVEVAMQWNDGYNEQ 293

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSV 372
           +  + N I   +GGTH +GLR A+TR I KY E  +   K  +    DD+      +LSV
Sbjct: 294 VLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEENEVAKKAKVETSGDDMREGLACVLSV 353

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
            + EP+F+ QTK KLVS + +  VE  +      +L++ P +A  +   +++ +  R   
Sbjct: 354 KVPEPKFSSQTKDKLVSSEVRLPVEELVGKALTDFLLETPNDAKIICGKIVDAARAREAA 413

Query: 433 RKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           RK RE+ R+   +  + LPGKLADC +     +ELF+VEGDSAGGSAKQ R+R  QA+LP
Sbjct: 414 RKAREMTRRKGVMDGMGLPGKLADCQEKDPAMSELFLVEGDSAGGSAKQGRDRKFQAILP 473

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAH 550
           L+GKILNV  A  +K+ ++Q+++ L+ ALG     +    E LRY ++IIMTDADVDG+H
Sbjct: 474 LKGKILNVERARFDKMLSSQEVLTLITALGTGIGKEDYNLEKLRYHRIIIMTDADVDGSH 533

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           I +LLLTFFY++M D+IE+ ++++  PPL++I  G +  Y  D+      + + 
Sbjct: 534 IRTLLLTFFYRQMPDIIERGYVYIAQPPLYKIKHGKEERYIKDDNELNAYMLKL 587



 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 5/106 (4%)

Query: 581 RITQG-TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           ++ +G  + +         + ++      +  +   R+KGLGEM   QL ET +D  +R 
Sbjct: 739 KVRRGEGEKMREQTVADFHQAMQWLLSEAERGVSRQRYKGLGEMNPEQLFETTLDVTQRR 798

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           LLRV+I   +            LMG + + R  FI+  A    ++ 
Sbjct: 799 LLRVQIEDAI----AADQIFTTLMGDEVEPRRNFIESNALVARNID 840


>gi|328675722|gb|AEB28397.1| DNA gyrase subunit B [Francisella cf. novicida 3523]
          Length = 803

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 230/576 (39%), Positives = 346/576 (60%), Gaps = 19/576 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S +  YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY + I
Sbjct: 2   SENKAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGYCDDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +G ++V DNGRGIP + H K   +S  E+ILT LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  KVIINKDGSVSVSDNGRGIPTDIH-KEEGRSAAEVILTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS++L +T+ R      Q++  G+P  PL++     +K GT ITF+P    F 
Sbjct: 121 GVSVVNALSEQLKLTIYRNGVEHYQEYVHGVPQFPLKEVGST-DKTGTLITFKPSKDTFS 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               FD   L+K  +  ++L+  VK                  E F + GG+  +++   
Sbjct: 180 -FVDFDYDILMKRIRELSFLNSGVKIELIDK-------INNRSEIFKYDGGIVAFVKYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            ++  I   +      K       VE A+ W +     I  + N I   +GGTH SGL+ 
Sbjct: 232 NSKKPIHENVIAVNGIKDDIQ---VELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKA 288

Query: 337 ALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           A+TR +  Y E      K  +++  +D       +LSV + +P+F+ QTK KLVS D + 
Sbjct: 289 AVTRTMNNYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKS 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKL 453
            VE+ + +    +L++NP EA  + E +++ ++ R   RK      RK A+    LPGKL
Sbjct: 349 AVESLVNEKLQEFLLENPKEAKIICEKILDSAKAREAARKARDMTRRKGALDIAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +E+++VEGDSAGGSAKQAR+R  QA+LPL+GKILNV  A  +K+  +Q++
Sbjct: 409 ADCQEKDPALSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEV 468

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L++ALGC      Y  +  RY K+I+MTDADVDG+HI +LLLTFFY++M +L+E+ +L
Sbjct: 469 ATLIKALGCGIGAEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYL 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++  PPL+++ +G +  Y  DE+   + L      G
Sbjct: 529 YIAQPPLYKVKKGKQETYLKDEDALAEYLGNIGLEG 564



 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K  Y    +  +  ++   K  +   ++ R+KGLGEM   QL ET MD + R LL
Sbjct: 706 VERGAKKEYV---DDFESAIDWLLKEARKGNDVQRYKGLGEMNPGQLWETTMDPDNRVLL 762

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +    +       LMG + + R  FI+  A  + ++ 
Sbjct: 763 QVSIKDAV----EADALFTTLMGDEVEPRRNFIESNALNVVNLD 802


>gi|254374023|ref|ZP_04989505.1| hypothetical protein FTDG_00183 [Francisella novicida GA99-3548]
 gi|151571743|gb|EDN37397.1| hypothetical protein FTDG_00183 [Francisella novicida GA99-3548]
 gi|328676671|gb|AEB27541.1| DNA gyrase subunit B [Francisella cf. novicida Fx1]
          Length = 803

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 230/576 (39%), Positives = 346/576 (60%), Gaps = 19/576 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S +  YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY + I
Sbjct: 2   SENKAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGYCDDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +G ++V DNGRGIP + H K   +S  E+ILT LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  KVIINKDGSVSVSDNGRGIPTDIH-KEEGRSAAEVILTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS++L +T+ R      Q++  G+P  PL++     +K GT ITF+P    F 
Sbjct: 121 GVSVVNALSEQLKLTIYRNGIEHYQEYVHGVPQFPLKEVGST-DKTGTLITFKPSKDTFS 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               FD   L+K  +  ++L+  VK                  E F + GG+  +++   
Sbjct: 180 -FVDFDYDILMKRIRELSFLNSGVKIELIDK-------INNRSEIFKYDGGIVAFVKYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            ++  I   +      K       VE A+ W +     I  + N I   +GGTH SGL+ 
Sbjct: 232 NSKKPIHENVIAVNGIKDDIQ---VELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKA 288

Query: 337 ALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           A+TR +  Y E      K  +++  +D       +LSV + +P+F+ QTK KLVS D + 
Sbjct: 289 AVTRTMNNYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKS 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKL 453
            VE+ + +    +L++NP EA  + E +++ ++ R   RK      RK A+    LPGKL
Sbjct: 349 AVESLVNEKLQEFLLENPKEAKIICEKILDSAKAREAARKARDMTRRKGALDIAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +E+++VEGDSAGGSAKQAR+R  QA+LPL+GKILNV  A  +K+  +Q++
Sbjct: 409 ADCQEKDPALSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEV 468

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L++ALGC      Y  +  RY K+I+MTDADVDG+HI +LLLTFFY++M +L+E+ +L
Sbjct: 469 ATLIKALGCGIGAEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYL 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++  PPL+++ +G +  Y  DE+   + L      G
Sbjct: 529 YIAQPPLYKVKKGKQETYLKDEDALAEYLGNIGLEG 564



 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K  Y    +  +  ++   K  +   ++ R+KGLGEM   QL ET MD + R LL
Sbjct: 706 VERGAKKEYV---DDFESAIDWLLKEARKGNDVQRYKGLGEMNPGQLWETTMDPDNRVLL 762

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +    +       LMG + + R  FI+  A  + ++ 
Sbjct: 763 QVSIKDAV----EADALFTTLMGDEVEPRRNFIESNALNVVNLD 802


>gi|330444523|ref|YP_004377509.1| DNA gyrase subunit B [Chlamydophila pecorum E58]
 gi|328807633|gb|AEB41806.1| DNA gyrase, B subunit [Chlamydophila pecorum E58]
          Length = 801

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 232/575 (40%), Positives = 335/575 (58%), Gaps = 18/575 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NYDAS+I +LEGL+ VR RPGMYIG      LHHL  EVIDN++DE +AGY   I V +
Sbjct: 6   KNYDASAITVLEGLQAVRERPGMYIGDAGISGLHHLVYEVIDNSIDEALAGYCTEINVRI 65

Query: 102 DGNGFLTVVDNGRGIPVENH-----PKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
             +G +T+ DNGRGIPVE H      +    S LE++LT LHAGGKFD  +Y++SGGLHG
Sbjct: 66  LEDGGITISDNGRGIPVEIHKRESEKQGREISALEVVLTVLHAGGKFDKDSYKVSGGLHG 125

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+S VNALS++L  TV +   I+  +FSRG+P +PL++     N+ GT ITF PDPKIF
Sbjct: 126 VGVSCVNALSEKLVATVCKGQQIYQMEFSRGVPETPLQRLGATENQ-GTTITFYPDPKIF 184

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                FD + L+K  +  A+L+  ++  +  D++++          F++ GG+++++   
Sbjct: 185 SVCV-FDRSILMKRLRELAFLNRGIRIHFEDDRDVSFDKVT-----FFYEGGIQSFVNYL 238

Query: 277 LENRSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGL 334
            +N+  +  E       + G       E ++ W     E I SY N I T +GGTH +G 
Sbjct: 239 NQNKESLFPEPIYIFGVRPGDDGDAEFEASLQWNSGYSELIYSYVNNIPTRQGGTHLTGF 298

Query: 335 RVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
             ALTR +  Y +     +     +  +D+      ++SV +  P+F GQTK KL +   
Sbjct: 299 STALTRVLNAYIKANNLAKNEKLSLTGEDIREGLTAVISVKVPNPQFEGQTKQKLGNGSV 358

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN-RKTAIRKLRLPG 451
               +    +    +  +NP  A  ++E V   ++ R   +K RE+  RK+A+   RLPG
Sbjct: 359 GSVAQQVTGEVLTTFFDENPQIAKLIVEKVFIAAQAREAAKKARELTLRKSALDSARLPG 418

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL DC +      E++IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  +KI  NQ
Sbjct: 419 KLIDCLEKDPEKCEVYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKIFQNQ 478

Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           +I  ++ ALGC   S     E LRY+++IIMTDADVDG+HI +LLLTFFY+ M  LIE +
Sbjct: 479 EIGTIIAALGCGIGSDTFNLEKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHMTALIENE 538

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605
            +++  PPL+++++  +  Y   E      L    
Sbjct: 539 CVYIAQPPLYKVSKKKEFRYILSENEMDDYLLTLG 573



 Score =  133 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 6/96 (6%)

Query: 592 HDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651
           +     Q+++   K  G+  IEI R+KGLGEM A QL +T M+  +RTL+RV +   +  
Sbjct: 709 YTCYTLQEVINYLKTIGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLIRVSLKDAV-- 766

Query: 652 LKDTQDSINKLMGTKADERFKFIQERASFI--DDVG 685
             +       LMG +   R +FI+  A  I  +++ 
Sbjct: 767 --EADHVFTMLMGEEVPPRREFIESHALSIRMNNLD 800


>gi|329942857|ref|ZP_08291636.1| DNA gyrase, B subunit [Chlamydophila psittaci Cal10]
 gi|313848029|emb|CBY17027.1| DNA gyrase subunit B [Chlamydophila psittaci RD1]
 gi|325506975|gb|ADZ18613.1| DNA gyrase subunit B [Chlamydophila psittaci 6BC]
 gi|328815117|gb|EGF85106.1| DNA gyrase, B subunit [Chlamydophila psittaci Cal10]
 gi|328914698|gb|AEB55531.1| DNA gyrase, B subunit [Chlamydophila psittaci 6BC]
          Length = 806

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 228/578 (39%), Positives = 335/578 (57%), Gaps = 18/578 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +   NYDAS+I +LEGL+ VR RPGMYIG T    LHHL  EV+DN++DE +AGY + I 
Sbjct: 3   AKEKNYDASAITVLEGLQAVRERPGMYIGDTGITGLHHLVYEVVDNSIDEAMAGYCSEIH 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNK-----STLEIILTTLHAGGKFDNSTYEISGG 153
           V +  +G +T+ DNGRGIP++ H K   K     S LE++LT LHAGGKFD  +Y++SGG
Sbjct: 63  VRILEDGGITISDNGRGIPIQTHEKESKKQGRDVSALEVVLTVLHAGGKFDKDSYKVSGG 122

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+S VNAL+++L  TV +    +  +FSRG+P++ L+       + GT ITF PD 
Sbjct: 123 LHGVGVSCVNALAEKLVATVYKDKQAYQMEFSRGVPVTGLQLLGATDKQ-GTEITFYPDN 181

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IF     FD + L+K  +  A+L+  +   +  D++++      +K  F++ GG+++++
Sbjct: 182 EIFSSCV-FDRSILIKRLRELAFLNRGITIIFEDDRDVS-----FDKVIFFYEGGIQSFV 235

Query: 274 QTKLENRSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHE 331
               +N+  +  E       + G       E A+ W     E I SY N I T +GGTH 
Sbjct: 236 SYLNQNKESLFPEPIYISGSRTGDDGDIEFEAALQWNSGYSELIYSYANNIPTRQGGTHL 295

Query: 332 SGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G   ALTR +  Y +     +     +  +D+      ++SV +  P+F GQTK KL +
Sbjct: 296 TGFSTALTRVLNAYIKAHNLAKNDKLSLTGEDIREGLTAVVSVKVPNPQFEGQTKQKLGN 355

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN-RKTAIRKLR 448
            D     +    +    +  +NP  A  ++E V   ++ R   +K RE+  RK+A+   R
Sbjct: 356 SDVGSVSQQITGEALTIFFDENPQIAKMIVEKVFIAAQAREAAKKARELTLRKSALDSAR 415

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKL DC +      E++IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  +KI 
Sbjct: 416 LPGKLIDCLEKDPAKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKIF 475

Query: 509 NNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
            NQ+I  ++ ALGC   S       LRY ++IIMTDADVDG+HI +LLLTFFY+ M  LI
Sbjct: 476 QNQEIGTIIAALGCGIGSDNFNLGKLRYRRIIIMTDADVDGSHIRTLLLTFFYRHMTALI 535

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605
           E + +++  PPL+++++     Y   E+     L    
Sbjct: 536 ENECVYIAQPPLYKVSKKKDFRYILSEKEMDDYLLTLG 573



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 6/96 (6%)

Query: 592 HDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651
           +     +++++  K  G+  IEI R+KGLGEM A QL +T M+  +RTL+RV +   +  
Sbjct: 714 YTCYTLKEVIDHLKALGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAV-- 771

Query: 652 LKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685
             +       LMG +   R +FI+  A  +   ++ 
Sbjct: 772 --EADHIFTMLMGEEVPPRREFIENHALSVKMNNLD 805


>gi|170694067|ref|ZP_02885223.1| DNA gyrase, B subunit [Burkholderia graminis C4D1M]
 gi|170141139|gb|EDT09311.1| DNA gyrase, B subunit [Burkholderia graminis C4D1M]
          Length = 823

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 233/599 (38%), Positives = 345/599 (57%), Gaps = 37/599 (6%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIA 91
               N    ++Y ASSI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +A
Sbjct: 2   TETNNTQPDNSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPV-----ENHPKFPNKSTLEIILTTLHAGGKFDNS 146
           GY N I+V +  +  +++ DNGRG+P      + H   P +S  EI++T LHAGGKFD +
Sbjct: 62  GYCNDIQVIIHADNSISITDNGRGVPTGLKMDDKHE--PKRSAAEIVMTELHAGGKFDQN 119

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLE 194
           +Y++SGGLHGVG+S VNALS  L +T+ R       +F RG+P            +SP++
Sbjct: 120 SYKVSGGLHGVGVSCVNALSAWLRLTIRRDGKKHFMEFHRGVPQNRVIEEIDGVAVSPIQ 179

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
                 N RGT + F  D  IFG+   +    L K  +  ++L+  V+   +  +   E 
Sbjct: 180 VVGDTEN-RGTEVHFMADETIFGNV-EYHYDILAKRIRELSFLNNGVRIRLTDQRTGKED 237

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313
                   F F GG+K +++   + +S++   IF    EK G     VE A+ W +    
Sbjct: 238 D-------FAFVGGVKGFVEYINKTKSVLHPTIFHVSGEKDGV---GVEVAMQWNDSYNE 287

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
            +  + N I   +GGTH +GLR A+TR + KY    +   K  +    DD+      +LS
Sbjct: 288 NVLCFTNNIPQRDGGTHLTGLRAAMTRVLNKYIADHEVAKKAKVETSGDDMREGLSCVLS 347

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V + EP+F+ QTK KLVS + +  VE+ +    + +L++ P +A  +   +++ +  R  
Sbjct: 348 VKVPEPKFSAQTKDKLVSSEVRAPVEDVVAKALEEFLLETPNDAKIICGKIVDAARARDA 407

Query: 432 RRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            RK RE+ R+   +  + LPGKLADC +     +E++IVEGDSAGGSAKQ R+R  QA+L
Sbjct: 408 ARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAIL 467

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGA 549
           PLRGK+LNV  A  +K+ +++QI+ L+ ALGC    +    + LRY ++IIMTDADVDGA
Sbjct: 468 PLRGKVLNVEKARYDKLLSSEQIVTLITALGCGIGKEDYNLDKLRYHRIIIMTDADVDGA 527

Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           HI +LLLTFFY++M ++IE+ ++++  PPLF+I  G    Y  DE      + +    G
Sbjct: 528 HIRTLLLTFFYRQMPEMIERGYIYIAQPPLFKIKAGKDERYLKDESEVNAHILKLALQG 586



 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             +  ++      +  I   R+KGLGEM   QL ET MD   R LLRV+I   +      
Sbjct: 737 DFKSAMKWLLADAERNISKQRYKGLGEMNPGQLWETTMDPTVRRLLRVQIEDAI----AA 792

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
                 LMG   + R  FI+  A    ++ 
Sbjct: 793 DGIFTTLMGDDVEPRRAFIESNALRAGNID 822


>gi|285016825|ref|YP_003374536.1| DNA topoisomerase II (DNA gyrase subunit b) protein [Xanthomonas
           albilineans GPE PC73]
 gi|166362463|gb|ABY87167.1| DNA gyrase B [Xanthomonas albilineans]
 gi|283472043|emb|CBA14550.1| probable dna topoisomerase II (dna gyrase subunit b) protein
           [Xanthomonas albilineans]
          Length = 820

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 234/588 (39%), Positives = 351/588 (59%), Gaps = 21/588 (3%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVI 90
           +      + + NYDA+SI  LEGLE VR RPGMYIG   D   LHH+  EV+DN++DE +
Sbjct: 2   TDEQNTHANNGNYDANSITALEGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSIDEAL 61

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNK-----STLEIILTTLHAGGKFDN 145
           AG+A+ + V++  +G ++V DNGRGIPV  H +   K     S  E+++T LHAGGKFD+
Sbjct: 62  AGHADHVAVTIHADGSVSVSDNGRGIPVGKHAQMSKKLDREVSAAEVVMTVLHAGGKFDD 121

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS++L + + +    + Q++S G  L+PL++  +   KRGT
Sbjct: 122 NSYKVSGGLHGVGVSVVNALSEKLLLDIFQGGFHYQQEYSHGAALAPLKQL-ETSAKRGT 180

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            + F P  K F +   F    L +  +  ++L+  VK   + ++          +++F++
Sbjct: 181 TLRFWPSVKAFNNNVEFHYDILARRLRELSFLNSGVKIVLADERG------EGRRDDFHY 234

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG++++++     ++ +   + +   E  G    TVE A+ W +     +  + N I  
Sbjct: 235 EGGIRSFVEHLAHLKTPLHPNVISVSGEHNGI---TVEVALQWTDSYQETMYCFTNNIPQ 291

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTR +  Y E     +   I++  DD+    + +LSV + +P F+ Q
Sbjct: 292 KDGGTHLAGFRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQ 351

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441
           TK KLVS D +  VENA     + +L +NP EA  +   +++ +  R   RK      RK
Sbjct: 352 TKEKLVSSDVRPAVENAFGARLEEFLQENPNEAKAIAGKIVDAARAREAARKARDLTRRK 411

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            A+    LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR NQAVLPLRGKILNV  
Sbjct: 412 GALDIAGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRRNQAVLPLRGKILNVER 471

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +++  + Q+  L+ ALG    R +Y  + LRY ++IIMTDADVDGAHI +LLLTFFY
Sbjct: 472 ARFDRMLASDQVGTLITALGTGIGRDEYNPDKLRYHRIIIMTDADVDGAHIRTLLLTFFY 531

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++M +LIE+ ++++  PPL+R+ QG + +Y  D+      L      G
Sbjct: 532 RQMPELIERGYVYIGLPPLYRLKQGKQELYLKDDNALNVYLASSAVEG 579



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G K+            L E  K G+   +I RFKGLGEM A QL ET ++ + R LL
Sbjct: 723 IVRGNKTQAISSFAQAHAWLFEEAKKGR---QIQRFKGLGEMNAEQLWETTVNPDTRRLL 779

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +          + LMG   + R  FI+E A  + ++ 
Sbjct: 780 QVRIEDAV----AADQIFSTLMGDVVEPRRDFIEENALKVANLD 819


>gi|208778992|ref|ZP_03246338.1| DNA gyrase, B subunit [Francisella novicida FTG]
 gi|208744792|gb|EDZ91090.1| DNA gyrase, B subunit [Francisella novicida FTG]
          Length = 803

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 230/576 (39%), Positives = 346/576 (60%), Gaps = 19/576 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S +  YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY + I
Sbjct: 2   SENKAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGYCDDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +G ++V DNGRGIP + H K   +S  E+ILT LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  KVIINKDGSVSVSDNGRGIPTDIH-KEEGRSAAEVILTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS++L +T+ R      Q++  G+P  PL++     +K GT ITF+P    F 
Sbjct: 121 GVSVVNALSEQLKLTIYRNGIEHYQEYVHGVPQFPLKEVGST-DKTGTLITFKPSKDTFS 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               FD   L+K  +  ++L+  VK                  E F + GG+  +++   
Sbjct: 180 -FVDFDYDILMKRIRELSFLNSGVKIELIDK-------INNRSEIFKYDGGIVAFVKYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            ++  I   +      K       VE A+ W +     I  + N I   +GGTH SGL+ 
Sbjct: 232 NSKKPIHENVIAVNGIKDDIQ---VELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKA 288

Query: 337 ALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           A+TR +  Y E      K  +++  +D       +LSV + +P+F+ QTK KLVS D + 
Sbjct: 289 AITRTMNNYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKS 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKL 453
            VE+ + +    +L++NP EA  + E +++ ++ R   RK      RK A+    LPGKL
Sbjct: 349 AVESLVNEKLQEFLLENPKEAKIICEKILDSAKAREAARKARDMTRRKGALDIAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +E+++VEGDSAGGSAKQAR+R  QA+LPL+GKILNV  A  +K+  +Q++
Sbjct: 409 ADCQEKDPALSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEV 468

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L++ALGC      Y  +  RY K+I+MTDADVDG+HI +LLLTFFY++M +L+E+ +L
Sbjct: 469 ATLIKALGCGIGAEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYL 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++  PPL+++ +G +  Y  DE+   + L      G
Sbjct: 529 YIAQPPLYKVKKGKQETYLKDEDALAEYLGNIGLEG 564



 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K  Y    +  +  ++   K  +   ++ R+KGLGEM   QL ET MD + R LL
Sbjct: 706 VERGAKKEYV---DDFESAIDWLLKEARKGNDVQRYKGLGEMNPGQLWETTMDPDNRVLL 762

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +    +       LMG + + R  FI+  A  + ++ 
Sbjct: 763 QVSIKDAV----EADALFTTLMGDEVEPRRNFIESNALNVVNLD 802


>gi|116750115|ref|YP_846802.1| DNA gyrase subunit B [Syntrophobacter fumaroxidans MPOB]
 gi|116699179|gb|ABK18367.1| DNA gyrase subunit B [Syntrophobacter fumaroxidans MPOB]
          Length = 808

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 237/578 (41%), Positives = 352/578 (60%), Gaps = 18/578 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +++ D Y A  I +LEGL  VR RP MYIG    + LHHL  EV+DN++DE + G+ + 
Sbjct: 8   ERNSHDEYTAQQITVLEGLSAVRKRPSMYIGNVSTEGLHHLVYEVVDNSIDEALVGHCDS 67

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I++ +  +G +TV DNGRGIPV+ H K  N   +++++T LHAGGKFD+++Y++SGGLHG
Sbjct: 68  IKIQIHLDGSVTVDDNGRGIPVDTHEK-ENLPAVQVVMTMLHAGGKFDDASYKVSGGLHG 126

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+SVVNALS+ L V + R+  ++ Q++ RG   +PL  K + +  RGTR+TF+PD +IF
Sbjct: 127 VGVSVVNALSEYLEVEIRREGKVYYQRYERGEAKTPLIVKGETQR-RGTRVTFKPDTEIF 185

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            D        L +  +  A+L+  V    S ++       IP+  ++ + GGL ++++  
Sbjct: 186 TD-TEISFDILAQRLRELAFLNRGVSIELSDER-------IPKDRQYCYEGGLVSFVEYL 237

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            +N+  +  E+     EK+G    +++ AI + +    +I ++ N I T EGGTH  G +
Sbjct: 238 NKNKEPLYPEVIYVGGEKQGV---SIDIAIQYNQTYNEKIFTFANNINTKEGGTHLVGFK 294

Query: 336 VALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
             LTR IK+YA   +  +A    +I DD+      I+SV + +P+F GQTKTKL + D +
Sbjct: 295 TGLTRSIKQYATQNKMAKADLDKMIGDDVREGLTAIVSVKLSQPQFEGQTKTKLGNSDVK 354

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGK 452
             VEN + +    +  +NP     +L+ V+E +  R   RK +E+ R+   +    LPGK
Sbjct: 355 GLVENLVYEKLSIFFEENPKVIRTILDKVLEAARAREAARKAKELTRRKGVLSDHSLPGK 414

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +     +E+FIVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  +  +K+  NQ+
Sbjct: 415 LADCQERDPSRSEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRFDKMVENQE 474

Query: 513 IMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           I  ++ ALG    + +Y  E LRY K IIMTDADVDGAHI +LLLTFF++ M +LIE+ H
Sbjct: 475 IRTMISALGTGIGKDEYNPEKLRYHKTIIMTDADVDGAHIRTLLLTFFFRMMPELIERGH 534

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK 609
           LF+  PPL+R+  G +  Y  D+E     L       K
Sbjct: 535 LFIAQPPLYRLAVGKQEFYMKDDESLDAYLLSRAADKK 572



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 50/126 (39%), Gaps = 11/126 (8%)

Query: 563 MYDLIE--QKHLFLI-SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
              L+E    HL +    P + +  G             + L E     +    I R+KG
Sbjct: 690 FKKLLELYNNHLEIFNQTP-YAVKDGQGEARFDHPGDLFRFLTE---EARKGTNIQRYKG 745

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679
           LGEM   QL ET M+  KRTLL+V +           +    LMG + + R  FIQ  A 
Sbjct: 746 LGEMNPEQLWETTMNPEKRTLLQVRVEDQY----LADELFTTLMGDRVEPRRDFIQFNAL 801

Query: 680 FIDDVG 685
              ++ 
Sbjct: 802 DFRELD 807


>gi|307728079|ref|YP_003905303.1| DNA gyrase subunit B [Burkholderia sp. CCGE1003]
 gi|307582614|gb|ADN56012.1| DNA gyrase, B subunit [Burkholderia sp. CCGE1003]
          Length = 823

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 236/599 (39%), Positives = 343/599 (57%), Gaps = 37/599 (6%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIA 91
               N    ++Y ASSI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +A
Sbjct: 2   TETNNTQPDNSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPV-----ENHPKFPNKSTLEIILTTLHAGGKFDNS 146
           GY N I+V +  +  +++ DNGRG+P      + H   P +S  EI++T LHAGGKFD +
Sbjct: 62  GYCNDIQVIIHADNSISITDNGRGVPTGLKMDDKHE--PKRSAAEIVMTELHAGGKFDQN 119

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLE 194
           +Y++SGGLHGVG+S VNALS  L +TV R       +F RG+P             SP++
Sbjct: 120 SYKVSGGLHGVGVSCVNALSAWLRLTVRRDGKKHFMEFHRGVPQNRVLEEIDGVMTSPMQ 179

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
                 N RGT + F  D  IFG+   +    L K  +  ++L+  V+      +   E 
Sbjct: 180 VIGDTEN-RGTEVHFMADETIFGNV-EYHYDILAKRIRELSFLNNGVRIRLLDQRSGKE- 236

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313
                 E+F F GG+K +++   + +S++   IF    EK G     VE A+ W +    
Sbjct: 237 ------EDFAFVGGVKGFVEYINKTKSVLHPTIFHITGEKDGV---GVEVAMQWNDSYNE 287

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
            +  + N I   +GGTH +GLR A+TR + KY    +   K  +    DD+      +LS
Sbjct: 288 NVLCFTNNIPQRDGGTHLTGLRAAMTRVLNKYIADHEVAKKAKVETSGDDMREGLSCVLS 347

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V + EP+F+ QTK KLVS + +  VE  +    + +L++ P +A  +   +++ +  R  
Sbjct: 348 VKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICSKIVDAARARDA 407

Query: 432 RRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            RK RE+ R+   +  + LPGKLADC +     +E++IVEGDSAGGSAKQ R+R  QA+L
Sbjct: 408 ARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAIL 467

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGA 549
           PLRGK+LNV  A  +K+ +++QI+ L+ ALGC         E LRY ++IIMTDADVDGA
Sbjct: 468 PLRGKVLNVEKARYDKLLSSEQIVTLITALGCGIGKDDYNLEKLRYHRIIIMTDADVDGA 527

Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           HI +LLLTFFY++M ++IE+ ++++  PPLF+I  G    Y  DE      + +    G
Sbjct: 528 HIRTLLLTFFYRQMPEMIERGYIYIAQPPLFKIKAGKDERYLKDETEVNAHILKLALQG 586



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             +  ++      +  +   R+KGLGEM   QL ET MD   R LLRV+I   +      
Sbjct: 737 DFKSAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMDPAVRRLLRVQIEDAI----AA 792

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
                 LMG   + R  FI+  A    ++ 
Sbjct: 793 DGIFTTLMGDDVEPRRAFIESNALRAGNID 822


>gi|254457757|ref|ZP_05071185.1| DNA gyrase, B subunit [Campylobacterales bacterium GD 1]
 gi|207086549|gb|EDZ63833.1| DNA gyrase, B subunit [Campylobacterales bacterium GD 1]
          Length = 769

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 249/653 (38%), Positives = 351/653 (53%), Gaps = 39/653 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY AS+I++L+GLE VR RPGMYIG T  + LHHL  EVIDN++DE +AG+ + I ++L
Sbjct: 2   ENYGASNIKVLKGLEAVRKRPGMYIGDTGHRGLHHLVYEVIDNSIDEAMAGHCDTINITL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
                  V DNGRGIP + HP     S   ++LT LHAGGKFD  TY++SGGLHGVG+SV
Sbjct: 62  TKENTCRVSDNGRGIPTDMHP-TEGMSAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS +L +T+ R+  IF Q F +GIP   L    K R    T I F  DP IF D   
Sbjct: 121 VNALSSDLKMTIYREGEIFEQNFKKGIPQEILAVTGKTRKTG-TTIEFSADPSIFTDTVT 179

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F+   L K  +  AYL+  +   +  ++         +KEE++F GG+  Y+    +   
Sbjct: 180 FEYEYLSKRFKELAYLNPFITIIFKDER-------TDKKEEYHFEGGIAQYVADMNKKAV 232

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340
           +     FT K E         + A+ + E   E   S+ N I T  GGTHE+G R  LTR
Sbjct: 233 IAQVYSFTAKVED-----IEFDIALMYNESYEEKLASFVNNIRTPNGGTHEAGFRAGLTR 287

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  Y        ++   I  +D     + I+S  + EP+F GQTK KL +   +  V+ 
Sbjct: 288 VISNYNAQNGAAKEKDTKISGEDASEGLIAIVSARVPEPQFEGQTKGKLGNTYVRPLVQK 347

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
              +    Y  +NPIEA  ++   +  +  R   +K RE   RK ++    LPGKLADC 
Sbjct: 348 QTYELLSKYFEENPIEAKAIVSKSLMAARGREAAKKARELTRRKDSMSVGTLPGKLADCQ 407

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
              A   EL++VEGDSAGGSAK  R+R  QA+LPL+GKILNV  A  +KI  +++I +++
Sbjct: 408 SKDASICELYLVEGDSAGGSAKMGRDRVFQAILPLKGKILNVEKARLDKILKSEEITNMI 467

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+GC    +Y EE LRY K+IIMTDADVDG+HI +LLLTFF++    +IE  +L+L  P
Sbjct: 468 TAMGCGIGEEYNEEKLRYHKLIIMTDADVDGSHIQTLLLTFFFRHFRSVIENGYLYLAQP 527

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL+R  +G K +Y  D+      L E   +G   +++    G+G    + L       + 
Sbjct: 528 PLYRYKKGKKEIYFKDDRAMNDYLIE---NGIESLDVE---GIG---DNDLVSYFRMVDH 578

Query: 638 ---------RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
                    R    V++ +      D      K M  K +   KF+ +  + I
Sbjct: 579 YRGSLVALERRYALVDLIRHFIENPDLIGLDIKSMYEKVE---KFLVDNGNNI 628



 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 4/92 (4%)

Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
           +E    +LE   ++ K    I R+KGLGEM   QL ET M    R LL+V+I       +
Sbjct: 681 DEDILVVLENINEYAKKGAYIQRYKGLGEMNPDQLWETTMTPENRVLLQVQIED----AE 736

Query: 654 DTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              D+    MG + + R  +I+  A  +  + 
Sbjct: 737 VASDAFTLFMGDEVEPRRNYIETHAKDVKHLD 768


>gi|81251090|gb|ABB69889.1| DNA gyrase subunit B [Nitrosovibrio sp. FJI82]
          Length = 559

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 223/559 (39%), Positives = 340/559 (60%), Gaps = 19/559 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGY 93
             N + S++Y + SI+IL+GL+ VR RPGMYIG T D   LHH+  EV+DNA+DE +AGY
Sbjct: 13  GNNPANSNDYGSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEALAGY 72

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFP-NKSTLEIILTTLHAGGKFDNSTYEISG 152
            + I V++  +  ++V+DNGRGIP          +S  EI++T LHAGGKFD+++Y++SG
Sbjct: 73  CDEITVTIHPDNSVSVLDNGRGIPTGIKQDDELKRSAAEIVMTELHAGGKFDDNSYKVSG 132

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS+ L +T+ R       +F  G P++PL    K   +RGT + F   
Sbjct: 133 GLHGVGVSVVNALSEWLRLTIRRGGLTHQIEFRMGAPVAPLAILGKT-ERRGTEVHFLAS 191

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            +IFGD   +      +  +  ++L+  VK      +         ++E F F GG+K++
Sbjct: 192 KQIFGDI-EYHYDIFARRLRELSFLNNGVKIHLVDQR-------TGKEETFAFAGGVKSF 243

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++     ++++   IF  + EK+G     VE ++ W +    ++  + N I   +GGTH 
Sbjct: 244 VEYINRAKTVLHPNIFYARGEKEGI---VVEVSMQWNDSYAEQVLCFTNNIPQKDGGTHL 300

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +GLR A+TR +  Y E  +   K  I    DD+      +LSV + EP+F+ QTK KLVS
Sbjct: 301 TGLRAAMTRTLNSYIEKNELSKKAKIETSGDDMREGLSCVLSVKLFEPKFSSQTKEKLVS 360

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLR 448
            + +  VE  +      +L + P++A  +   +I+ +  R   RK RE+ R+   +  L 
Sbjct: 361 SEVRPAVEEIVTQKLSDFLQERPLDAKTICGKIIDAARAREAARKARELTRRKGVLDGLG 420

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADC +      EL++VEGDSAGGSAKQ R+R  QA++PL+GKILNV  A  +K+ 
Sbjct: 421 LPGKLADCQEKDPALCELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKARFDKLI 480

Query: 509 NNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
           ++Q+I+ L+ ALG    + +Y  + LRY ++IIMTDADVDG+HI +LLLTFFY++M +LI
Sbjct: 481 SSQEIISLITALGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELI 540

Query: 568 EQKHLFLISPPLFRITQGT 586
           E+ H+++  PPL+++  G 
Sbjct: 541 ERGHIYIAQPPLYKVKHGK 559


>gi|238650642|ref|YP_002916494.1| DNA gyrase subunit B [Rickettsia peacockii str. Rustic]
 gi|238624740|gb|ACR47446.1| DNA gyrase subunit B [Rickettsia peacockii str. Rustic]
          Length = 807

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 229/566 (40%), Positives = 332/566 (58%), Gaps = 14/566 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
             +Y A SI++L+GLE VR RPGMYIG   +   LHH+  EV+DNA+DE +AGY +L+ V
Sbjct: 10  ESSYGADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNAIDESLAGYCDLVRV 69

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L+ NG +TV DNGRGIPVE H +    S  E+I+T LHAGGKFD + Y+++GGLHGVG+
Sbjct: 70  TLNKNGSVTVSDNGRGIPVEIHEE-EGISAAEVIMTQLHAGGKFDQNAYKVAGGLHGVGV 128

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+ L + + R N  +  +F+ GI  +PL   ++  +K+GT +TF P  + F + 
Sbjct: 129 SVVNALSEWLELRIWRNNKEYLMRFNNGITEAPLAVVKENIDKKGTEVTFFPSVETFTNI 188

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             FD   +    +  A+L+  VK     ++    K        FY+ GG++ Y++     
Sbjct: 189 -EFDFGTIEHRLRELAFLNSGVKLLLVDNRFEEVKEVE-----FYYTGGIEAYVKYIDRA 242

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  I          +      ++E A+ W +     I  + N I   +GGTH S  + A+
Sbjct: 243 KHAIHP--CIVVNTENAESGISLELAMHWNDSYHENILCFTNNIRQRDGGTHLSAFKSAI 300

Query: 339 TRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR I  Y + T   +        +D       +LSV + +P+F+ QTK KLVS + +  V
Sbjct: 301 TRVITSYLDTTGLNKKAKNYFSGEDTREGLCCVLSVKVPDPKFSSQTKDKLVSSEVRPVV 360

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
           ENA+      +  ++P EA  ++  ++E +  R   RK RE   RK+A+    LPGKLAD
Sbjct: 361 ENAVYTKVLEWFEEHPAEAKAIITKIMEAANAREAARKARELTRRKSALEVSNLPGKLAD 420

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C       +ELFIVEGDSAGG+AKQ R+   QA+LPLRGKILNV  A  +K+  + QI  
Sbjct: 421 CHAKDPAISELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGSDQIGT 480

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           L+ ALG     ++  E LRY KVIIMTDADVDG+HI +LLLTFFY+ M +LI++ +L++ 
Sbjct: 481 LITALGISVEREFSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPELIKKGYLYIA 540

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKIL 601
            PPL+++ +G    Y  +E+  Q  L
Sbjct: 541 QPPLYKVKKGAAEFYLKNEQALQDYL 566



 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 56/136 (41%), Gaps = 21/136 (15%)

Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK 609
            I+ L LT F      L              ++   ++             L    K GK
Sbjct: 692 QISKLALTIFDIFSKQL--------------KLIVKSQEFDILTPSQL---LNTIIKCGK 734

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669
             I I RFKGLGEM + QL ET +D  KRTLL+V +      + + +   + LMG   + 
Sbjct: 735 RGINIQRFKGLGEMNSDQLWETTLDPTKRTLLQVRV----AEIDEAEGIFSTLMGDVVEP 790

Query: 670 RFKFIQERASFIDDVG 685
           R  FIQ  A  + ++ 
Sbjct: 791 RRLFIQANALNVVNLD 806


>gi|114330039|ref|YP_746261.1| DNA gyrase subunit B [Nitrosomonas eutropha C91]
 gi|114307053|gb|ABI58296.1| DNA gyrase subunit B [Nitrosomonas eutropha C91]
          Length = 809

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 220/582 (37%), Positives = 346/582 (59%), Gaps = 19/582 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNA 85
                      +S+  +YD++SI+IL+GL+ VR RPGMYIG T D   LHH+  EV+DNA
Sbjct: 2   NTSQPESTKNTESSQRDYDSNSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVVDNA 61

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFP-NKSTLEIILTTLHAGGKFD 144
           +DE +AGY + I V +  +  ++V DNGRGIP +        +S  EI++T LHAGGKFD
Sbjct: 62  IDEALAGYCDEISVIIHADNSISVQDNGRGIPTDIKQDDEQKRSAAEIVMTELHAGGKFD 121

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+ L +T+ R+  +   +F  G+ ++PL    +  +K G
Sbjct: 122 DNSYKVSGGLHGVGVSVVNALSEWLRLTIYRKGNVHQIEFRDGVAVAPLAVTGQT-DKHG 180

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F     IFG+   +      +  +  ++L+  ++      ++  E       E F 
Sbjct: 181 TEVHFLASQAIFGNVT-YHYDIFARRLRELSFLNYGIRIRLVDRRDNRE-------ETFA 232

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           F GG++ +++     ++++   IF  K  K      TVE A+ W +    ++  + N I 
Sbjct: 233 FSGGIRNFVEYINRTKTVLHPSIFYAKGMKDDI---TVEIAMQWNDSYAEQVLCFTNNIP 289

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +GLR A+TR +  Y E  +   K  +    DD+      +LS+ + EP+F+ 
Sbjct: 290 QKDGGTHLTGLRAAMTRTLNSYIEKNELAKKAKVDTTGDDMREGMTCVLSIKLFEPKFSS 349

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK KLVS + +  VE  +      ++++NP EA  +   +IE +  R   RK RE+ R+
Sbjct: 350 QTKEKLVSSEVRPVVEEVVSHKLSEFMLENPNEAKIICNKIIEAARAREAARKARELTRR 409

Query: 442 TA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
              +  + LPGKLADC +      EL++VEGDSAGGSAKQ R+R  QA++PL+GKILNV 
Sbjct: 410 KGVLDSMGLPGKLADCQEKDPKLCELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVE 469

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
            +  +K+ ++Q+I+ L+ ALG    + +Y  + LRY ++IIMTDADVDG+HI +LLLTFF
Sbjct: 470 KSRFDKLISSQEIVSLITALGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFF 529

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           Y++M +LIE+ H+++  PPL++I  G +  Y  D+   ++ +
Sbjct: 530 YRQMPELIERGHIYIAQPPLYKIKHGKQERYLKDDYELKRHI 571



 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 7/105 (6%)

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           ++ +G + V        ++ LE      K  + I R+KGLGEM   QL ET MD + R L
Sbjct: 711 KVKRGEQEVPIL---EFKEALEWLLAEAKKGVTIQRYKGLGEMNPEQLWETTMDPSNRLL 767

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           LRV+I   +     T +    LMG   + R  FI+  A    ++ 
Sbjct: 768 LRVQIEDSI----LTDEIFTTLMGDVVEPRRAFIESNALRARNID 808


>gi|255506765|ref|ZP_05382404.1| DNA gyrase subunit B [Chlamydia trachomatis D(s)2923]
          Length = 804

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 225/580 (38%), Positives = 332/580 (57%), Gaps = 18/580 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +    YDAS+I +LEGL+ VR RPGMYIG T    LHHL  EV+DN++DE +AG+   + 
Sbjct: 3   AQEKKYDASAITVLEGLQAVRERPGMYIGDTGVTGLHHLVYEVVDNSIDEAMAGFCTEVV 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPK-----FPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           V +  +G +++ DNGRGIP++ H K         S LE++LT LHAGGKFD  +Y++SGG
Sbjct: 63  VRILEDGGISISDNGRGIPIQIHEKESAKQGHEISALEVVLTVLHAGGKFDKDSYKVSGG 122

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+S VNALS++    V +    +S +FSRG PL+ L+      +KRGT + F PDP
Sbjct: 123 LHGVGVSCVNALSEKFIAKVFKDGQAYSMEFSRGAPLTTLQVLGPT-DKRGTEVLFYPDP 181

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF     FD A L+K  +  A+L+  V   +  D++        +K  F++ GG+++++
Sbjct: 182 AIFSTCV-FDRAILMKRLRELAFLNRGVTIVFEDDRD-----TGFDKVIFFYEGGIQSFV 235

Query: 274 QTKLENRSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHE 331
               +N+ ++       +  + G       E A+ W     E I SY N I T +GGTH 
Sbjct: 236 SYLNQNKEILFPNPIYIQGSRPGDDGDIEFEAALQWNSGYSELIYSYANNIPTRQGGTHL 295

Query: 332 SGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G   ALTR +  Y +     ++    +  +D+    V I+SV +  P+F GQTK KL +
Sbjct: 296 TGFSTALTRAVNSYIKAHNLSKSDKLSLTGEDIKEGLVAIVSVKVPNPQFEGQTKQKLGN 355

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN-RKTAIRKLR 448
            D     +    +    +  +NP  A  +++ V   ++ R   ++ RE+  RK+A+   R
Sbjct: 356 SDVGSVSQQIGGEVLTTFFEENPQIAKTIVDKVFVAAQAREAAKRARELTLRKSALDSAR 415

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKL DC +      E++IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  +K+ 
Sbjct: 416 LPGKLIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKVF 475

Query: 509 NNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
            NQ+I  ++ ALGC           LRY+++IIMTDADVDG+HI +LLLTFFY+ M  LI
Sbjct: 476 QNQEIGSIIAALGCGIGKDNFNLSKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHMSALI 535

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607
           E + +++  PPL+R+++     Y   E+     L      
Sbjct: 536 ENECVYIAQPPLYRVSKKKDFRYILSEKEMDGYLLNLGTK 575



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 9/97 (9%)

Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
            +     +++++  K  G+  IEI R+KGLGEM A QL +T M+  +RTL+RV +   + 
Sbjct: 714 CYT---LKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAV- 769

Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFI--DDVG 685
              +       LMG +   R +FI+  A  I  +++ 
Sbjct: 770 ---EADHIFTMLMGEEVPPRREFIESHALSIRMNNLD 803


>gi|255348547|ref|ZP_05380554.1| DNA gyrase subunit B [Chlamydia trachomatis 70]
 gi|255503087|ref|ZP_05381477.1| DNA gyrase subunit B [Chlamydia trachomatis 70s]
 gi|289525228|emb|CBJ14704.1| DNA gyrase subunit B [Chlamydia trachomatis Sweden2]
 gi|296434776|gb|ADH16954.1| DNA gyrase subunit B [Chlamydia trachomatis E/150]
 gi|296438496|gb|ADH20649.1| DNA gyrase subunit B [Chlamydia trachomatis E/11023]
          Length = 804

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 225/580 (38%), Positives = 332/580 (57%), Gaps = 18/580 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +    YDAS+I +LEGL+ VR RPGMYIG T    LHHL  EV+DN++DE +AG+   + 
Sbjct: 3   AQEKKYDASAITVLEGLQAVRERPGMYIGDTGVTGLHHLVYEVVDNSIDEAMAGFCTEVV 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPK-----FPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           V +  +G +++ DNGRGIP++ H K         S LE++LT LHAGGKFD  +Y++SGG
Sbjct: 63  VRILEDGGISISDNGRGIPIQIHEKESAKQGHEISALEVVLTVLHAGGKFDKDSYKVSGG 122

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+S VNALS++    V +    +S +FSRG PL+ L+      +KRGT + F PDP
Sbjct: 123 LHGVGVSCVNALSEKFIAKVFKDGQAYSMEFSRGAPLTTLQVLGPT-DKRGTEVLFYPDP 181

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF     FD A L+K  +  A+L+  V   +  D++        +K  F++ GG+++++
Sbjct: 182 AIFSTCV-FDRAILMKRLRELAFLNRGVTIVFEDDRD-----TGFDKVIFFYEGGIQSFV 235

Query: 274 QTKLENRSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHE 331
               +N+ ++       +  + G       E A+ W     E I SY N I T +GGTH 
Sbjct: 236 SYLNQNKEILFPNPIYIQGSRPGDDGDIEFEAALQWNSGYSELIYSYANNIPTRQGGTHL 295

Query: 332 SGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G   ALTR +  Y +     ++    +  +D+    V I+SV +  P+F GQTK KL +
Sbjct: 296 TGFSTALTRAVNSYIKAHNLSKSDKLSLTGEDIKEGLVAIVSVKVPNPQFEGQTKQKLGN 355

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN-RKTAIRKLR 448
            D     +    +    +  +NP  A  +++ V   ++ R   ++ RE+  RK+A+   R
Sbjct: 356 SDVGSVSQQIGGEVLTTFFEENPQIAKTIVDKVFVAAQAREAAKRARELTLRKSALDSAR 415

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKL DC +      E++IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  +K+ 
Sbjct: 416 LPGKLIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKVF 475

Query: 509 NNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
            NQ+I  ++ ALGC           LRY+++IIMTDADVDG+HI +LLLTFFY+ M  LI
Sbjct: 476 QNQEIGSIIAALGCGIGKDNFNLSKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHMSALI 535

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607
           E + +++  PPL+R+++     Y   E+     L      
Sbjct: 536 ENECVYIAQPPLYRVSKKKDFRYILSEKEMDGYLLNLGTK 575



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 9/97 (9%)

Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
            +     +++++  K  G+  IEI R+KGLGEM A QL +T M+  +RTL+RV +   + 
Sbjct: 714 CYT---LKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAV- 769

Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFI--DDVG 685
              +       LMG +   R +FI+  A  I  +++ 
Sbjct: 770 ---EADHIFTMLMGEEVPPRREFIESHALSIRMNNLD 803


>gi|241764343|ref|ZP_04762371.1| DNA topoisomerase (ATP-hydrolyzing) [Acidovorax delafieldii 2AN]
 gi|241366299|gb|EER60842.1| DNA topoisomerase (ATP-hydrolyzing) [Acidovorax delafieldii 2AN]
          Length = 703

 Score =  492 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 244/679 (35%), Positives = 348/679 (51%), Gaps = 38/679 (5%)

Query: 26  SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNA 85
              I    A  +  ++  Y   SIR+L+GLEPV+ RPGMY   T      H+  EV+DNA
Sbjct: 38  GTTIRAMSAKPSSVSASEYSEGSIRVLKGLEPVKQRPGMY---TRTDNPLHIIQEVLDNA 94

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA---GGK 142
            DE +AG+   I+V+L  +G ++V D+GRGIP   HP+      +E++ T LHA     K
Sbjct: 95  ADEALAGFGKKIKVTLHQDGSVSVEDDGRGIPFGLHPE-EKAPVIELVFTRLHAGGKFDK 153

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--LEKKEKVR 200
                Y  SGGLHGVG+SV NAL+  L  T  R+  +    FS G  + P      E   
Sbjct: 154 GKGGAYSFSGGLHGVGVSVTNALATRLEATSHREGKLARLVFSAGDVVEPLVARPLEAGE 213

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
            K+GT +   PD K F   +      L  + +SKA L   V    + +K           
Sbjct: 214 RKQGTTVRVWPDAKYFES-SALPLGELTHLLRSKAVLMPGVSVSLTNEKTRD-------T 265

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW----CEENPEIT 316
           + + + GGL+ YLQ  L    +I      G  +         E A        +  P   
Sbjct: 266 QTWQYKGGLRDYLQQTLSADPVIPLFEGEGFADAGHDSFAEGEGAAWCVAFTEDGQPVRE 325

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIR 375
           SY N I T  GGTHESGLR  L + +K + E  +   + + ++ +D+   A  +LS  + 
Sbjct: 326 SYVNLIPTSAGGTHESGLRDGLFQAVKSFIELHSLLPKGVKLMPEDVFARASYVLSAKVL 385

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           +P+F GQ K +L S DA R V   +R   + +L Q+     KL E  I+ ++ R R  ++
Sbjct: 386 DPQFQGQIKERLNSRDAVRLVSGFVRPALELWLNQHVEYGKKLAELAIKAAQTRQRAGQK 445

Query: 436 REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
            E  + + +  L  PGKL DC        E+F+VEGDSAGGSAK  R++ NQAVLPLRGK
Sbjct: 446 VEKRKGSGVAVL--PGKLTDCESRDIAYNEVFLVEGDSAGGSAKMGRDKENQAVLPLRGK 503

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIA 552
           +LN      +++  N +I D+  ALG        E D   LRY KV I++DADVDG+HI 
Sbjct: 504 VLNTWEVDRDRLFANTEIHDISVALGVDPHGPADEPDLSGLRYGKVCILSDADVDGSHIQ 563

Query: 553 SLLLTFFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKK 606
            LLLT F++    LIE  H+++  PPLFR+    +G K    +YA D+     IL++  K
Sbjct: 564 VLLLTLFFRHFPKLIETGHIYVARPPLFRVDVPARGKKPAAKMYALDDGELTAILDKCAK 623

Query: 607 HG--KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMG 664
            G  + K +ISRFKGLGEM A QL ET ++ + R LL V++     S   T+  I KLMG
Sbjct: 624 EGVPREKCQISRFKGLGEMNAEQLWETTLNPDTRRLLPVQLGGTGFSA--TEGLITKLMG 681

Query: 665 T-KADERFKFIQERASFID 682
             +A  R + ++     ++
Sbjct: 682 KGEAASRRELMELHGDAVE 700


>gi|330994267|ref|ZP_08318195.1| DNA gyrase subunit B [Gluconacetobacter sp. SXCC-1]
 gi|329758734|gb|EGG75250.1| DNA gyrase subunit B [Gluconacetobacter sp. SXCC-1]
          Length = 848

 Score =  492 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 218/596 (36%), Positives = 337/596 (56%), Gaps = 18/596 (3%)

Query: 16  SQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KAL 74
           +           +  D+    +   + +YDA+SI +L GL+ VR RPGMYIG TD+   L
Sbjct: 23  ASAGMSDQSSPDQKHDAEVAGSIPPAADYDAASISVLRGLDAVRKRPGMYIGDTDDGSGL 82

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           HH+  E+IDNA+DE  AG+A    V+L+G+G +TV D+GRGIP + H +    S  E++L
Sbjct: 83  HHMAFEIIDNAVDEAQAGFATTCIVTLNGDGSVTVRDDGRGIPTDMHHE-EGVSAAEVVL 141

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKF+ ++Y++SGGLHGVG +VVNALS+ + V + R+      +F  G     L 
Sbjct: 142 TKLHAGGKFNQNSYKVSGGLHGVGAAVVNALSEWMEVRIWREGREHVIRFRHGERDEALR 201

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
              +    RGT++TF+P  + F     F+   L +  +  A+L+  +K     ++     
Sbjct: 202 VVGESAEPRGTQVTFKPSAQTFAKV-EFEFPILERRLRELAFLNSGLKIVLRDER----- 255

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313
           +    +E F++ GGL  +++   + ++ I     TG  +    +   VE+A+ W +    
Sbjct: 256 HEPAREENFHYEGGLCAFVEWLDQGKTAIVEPPITGSLQND-ENGIKVEFALTWNDSFHE 314

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI-ISDDLMISAVGILSV 372
            +  + N I   +GG+H +G R ALTR + +YAE    K+       +D+      +LSV
Sbjct: 315 TMLCFTNNIPQRDGGSHLAGFRQALTRVVGRYAEANATKKDSHALNGEDMREGLTAVLSV 374

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
            + +P+F+ QTK KLVS + Q  V  A  D   H+   +P EA  ++  V++ +  R   
Sbjct: 375 KVPDPKFSSQTKDKLVSSEVQPVVHAAAADMISHWFETHPKEARHIVAKVMDAAAAREAA 434

Query: 433 RKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           R+ RE+ R+   +    LPGKLADC +      ELF+VEGDSAGG+AKQ R+R  QA+LP
Sbjct: 435 RRARELTRRKGVLDISSLPGKLADCQERDPSKCELFLVEGDSAGGTAKQGRDRRFQAILP 494

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDAD 545
           L+GKILNV  A  +++  + +I  L+ ALG            +  E LRY +++IMTDAD
Sbjct: 495 LKGKILNVERARFDRMLGSAEIGTLITALGTGIGRGDVEHGGFSIEKLRYHRIVIMTDAD 554

Query: 546 VDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           VDG+HI +LLLTFF+++M +LIE+ +L++  PPL+R  +G    Y  D+   +  L
Sbjct: 555 VDGSHIRTLLLTFFFRQMPELIEKGYLYIAQPPLYRAKRGNDERYLKDDAALESYL 610



 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
           E     G+  + I+RFKGLGEM   QL ET +D   RTLL+V++    N+ +      + 
Sbjct: 768 ERILAQGRKGLSINRFKGLGEMNDEQLWETTLDPAMRTLLQVKVGDIENAAQ----VFST 823

Query: 662 LMGTKADERFKFIQERASFIDDVG 685
           LMG   + R  FI   A  + ++ 
Sbjct: 824 LMGDVVEPRRDFIVGNALKVANLD 847


>gi|166154400|ref|YP_001654518.1| DNA gyrase subunit B [Chlamydia trachomatis 434/Bu]
 gi|166155275|ref|YP_001653530.1| DNA gyrase subunit B [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|165930388|emb|CAP03881.1| DNA gyrase subunit B [Chlamydia trachomatis 434/Bu]
 gi|165931263|emb|CAP06835.1| DNA gyrase subunit B [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 804

 Score =  492 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 224/580 (38%), Positives = 331/580 (57%), Gaps = 18/580 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +    YDAS+I +LEGL+ VR RPGMYIG T    LHHL  EV+DN++DE +AG+   + 
Sbjct: 3   AQEKKYDASAITVLEGLQAVRERPGMYIGDTGVTGLHHLVYEVVDNSIDEAMAGFCTEVV 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFP-----NKSTLEIILTTLHAGGKFDNSTYEISGG 153
           V +  +G +++ DNGRGIP++ H K         S LE++LT LHAGGKFD  +Y++SGG
Sbjct: 63  VRILEDGGISISDNGRGIPIQIHEKESAKQGREISALEVVLTVLHAGGKFDKDSYKVSGG 122

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+S VNALS++    V +    +S +FSRG PL+ L+      +KRGT + F PDP
Sbjct: 123 LHGVGVSCVNALSEKFIAKVFKDGQAYSMEFSRGAPLTTLQVLGPT-DKRGTEVLFYPDP 181

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF     FD A L+K  +  A+L+      +  D++        +K  F++ GG+++++
Sbjct: 182 AIFSTCV-FDRAILMKRLRELAFLNRGATIVFEDDRD-----TGFDKVVFFYEGGIQSFV 235

Query: 274 QTKLENRSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHE 331
               +N+ ++       +  + G       E A+ W     E I SY N I T +GGTH 
Sbjct: 236 SYLNQNKEILFPNPIYIQGSRPGDDGDIEFEAALQWNSGYSELIYSYANNIPTRQGGTHL 295

Query: 332 SGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G   ALTR +  Y +     ++    +  +D+    V I+SV +  P+F GQTK KL +
Sbjct: 296 TGFSTALTRAVNSYIKAHNLSKSDKLSLTGEDIKEGLVAIVSVKVPNPQFEGQTKQKLGN 355

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN-RKTAIRKLR 448
            D     +    +    +  +NP  A  +++ V   ++ R   ++ RE+  RK+A+   R
Sbjct: 356 SDVGSVSQQISGEVLTTFFEENPQIAKTIVDKVFVAAQAREAAKRARELTFRKSALDSAR 415

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKL DC +      E++IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  +K+ 
Sbjct: 416 LPGKLIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKVF 475

Query: 509 NNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
            NQ+I  ++ ALGC           LRY+++IIMTDADVDG+HI +LLLTFFY+ M  LI
Sbjct: 476 QNQEIGSIIAALGCGIGKDNFNLSKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHMSALI 535

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607
           E + +++  PPL+R+++     Y   E+     L      
Sbjct: 536 ENECVYIAQPPLYRVSKKKDFRYILSEKEMDGYLLNLGTK 575



 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 9/97 (9%)

Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
            +     +++++  K  G+  IEI R+KGLGEM A QL +T M+  +RTL+RV +   + 
Sbjct: 714 CYT---LKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAV- 769

Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFI--DDVG 685
              +       LMG +   R +FI+  A  I  +++ 
Sbjct: 770 ---EADHIFTMLMGEEVPPRREFIKSHALSIRMNNLD 803


>gi|45644630|gb|AAS73018.1| predicted topoisomerase IV subunit B [uncultured marine gamma
           proteobacterium EBAC20E09]
          Length = 605

 Score =  492 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 229/622 (36%), Positives = 347/622 (55%), Gaps = 23/622 (3%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MY   TD    +HL  EV+DNA+DE IAG+ + I++ L  NG + V D+GRG+PV+ HP 
Sbjct: 1   MY---TDTSCPNHLIQEVLDNAVDEAIAGHCSNIKIKLHKNGVIEVSDDGRGMPVDIHPD 57

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
               S +E+IL  LHAG KF    Y  SGGLHGVG+SVVNALS+ L V V R +      
Sbjct: 58  H-KLSGVELILCKLHAGAKFSGDEYSFSGGLHGVGVSVVNALSENLQVNVKRDSKEHEMH 116

Query: 184 FSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
           F  G   S L+    V     GT+I F+P+ K F      +  +L  + ++KA L   + 
Sbjct: 117 FDNGNKKSDLKVVGDVGIRNTGTKIQFKPNAKYFESI-DVNNKQLKHLLKAKAVLCPGLT 175

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF-TGKTEKKGTHRGT 301
             +  +KE        EK +++F  GLK+YL+      +L+  E   T K  K+      
Sbjct: 176 IDFFDEKE-------KEKIKWFFEDGLKSYLEEASSETNLLLDESILTSKKSKEHEVEFV 228

Query: 302 VEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISD 360
           + W+     +N    +Y N I T +GG+H +G +  L   +K++ E+ +   + + + +D
Sbjct: 229 INWSD-KPSKNKLDETYVNLIPTAQGGSHLNGFKSGLLDSMKEFCEIRKLLPKGLKLNAD 287

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D++ +A+ ++S  ++ P+FAGQTK +L S +    V ++ +D    +  ++  E  K+ E
Sbjct: 288 DVINNAIFVISSKMQNPQFAGQTKERLDSKEHMSFVSSSTKDVLSIWFNKHTEEGEKIAE 347

Query: 421 WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
             I  ++ R +     E  +    +   LPGKL+DC+    + TELF+VEGDSAGGSAKQ
Sbjct: 348 LAIISAQARAKASNTVERKKT--FKGPALPGKLSDCNSEDLNKTELFLVEGDSAGGSAKQ 405

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           AR RS QA++PLRGKILN     S++I  +Q+I +L  A+G    +      LRY K+ I
Sbjct: 406 ARERSFQAIMPLRGKILNTWDLESDEIIKSQEIKNLATAIGVMPGNSDI-SSLRYGKICI 464

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKI 600
           + DAD DG HIA+LL   F +    L+    +++  PPL+R+  G + +YA DE+ K++I
Sbjct: 465 LADADSDGLHIATLLCALFLRHFKPLVSDGRIYIAMPPLYRVDCGKEVLYALDEKQKEQI 524

Query: 601 LEEFK-KHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
           + EFK K GK KI I RFKGLGEM  SQL+ET MD   R L+R+ I+   N+       +
Sbjct: 525 VSEFKSKKGKPKINIQRFKGLGEMNPSQLRETVMDPETRQLVRLSISSTDNANAMMDLLL 584

Query: 660 NKLMGTKADERFKFIQERASFI 681
           +K     A  R ++++++ S  
Sbjct: 585 SK---KNAPARKEWLEKKGSLA 603


>gi|15892807|ref|NP_360521.1| DNA gyrase subunit B [Rickettsia conorii str. Malish 7]
 gi|20138262|sp|Q92H87|GYRB_RICCN RecName: Full=DNA gyrase subunit B
 gi|15619989|gb|AAL03422.1| DNA gyrase subunit B [Rickettsia conorii str. Malish 7]
          Length = 807

 Score =  492 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 229/566 (40%), Positives = 331/566 (58%), Gaps = 14/566 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
             +Y A SI++L+GLE VR RPGMYIG   +   LHH+  EV+DNA+DE +AGY +L+ V
Sbjct: 10  ESSYGADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNAIDESLAGYCDLVRV 69

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L+ NG +TV DNGRGIPVE H +    S  E+I+T LHAGGKFD + Y+++GGLHGVG+
Sbjct: 70  TLNKNGSVTVSDNGRGIPVEIHGE-EGISAAEVIMTQLHAGGKFDQNAYKVAGGLHGVGV 128

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+ L + + R N  +  +F+ GI  +PL   ++  +K+GT +TF P  + F + 
Sbjct: 129 SVVNALSEWLELRIWRNNKEYLMRFNNGITEAPLAVVKENIDKKGTEVTFFPSVETFTNI 188

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             FD   +    +  A+L+  VK     ++    K        FY+ GG++ Y++     
Sbjct: 189 -EFDFGTIEHRLRELAFLNSGVKILLVDNRFEEVKEVE-----FYYTGGIEAYVKYIDRA 242

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  I          +      ++E A+ W +     I  + N I   +GGTH S  + A+
Sbjct: 243 KHAIHP--CIVVNTENAESGISLELAMHWNDSYHENILCFTNNIRQRDGGTHLSAFKSAI 300

Query: 339 TRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR I  Y + T   +        +D       +LSV + +P+F+ QTK KLVS + +  V
Sbjct: 301 TRVITSYLDTTGLNKKAKNYFSGEDTREGLCCVLSVKVPDPKFSSQTKDKLVSSEVRPVV 360

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
           ENA+      +  ++P EA  ++  ++E +  R   RK RE   RK+A+    LPGKLAD
Sbjct: 361 ENAVYTKVLEWFEEHPAEAKAIIAKIMEAANAREAARKARELTRRKSALEVSNLPGKLAD 420

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C       +ELFIVEGDSAGG+AKQ R+   QA+LPLRGKILNV  A  +K+  + QI  
Sbjct: 421 CHAKDPAISELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGSDQIGT 480

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           L+ ALG     ++  E LRY KVIIMTDADVDG+HI +LLLTFFY+ M +LI + +L++ 
Sbjct: 481 LITALGISVEREFSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPELINKGYLYIA 540

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKIL 601
            PPL+++ +G    Y  +E+  Q  L
Sbjct: 541 QPPLYKVKKGAAEFYLKNEQALQDYL 566



 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 7/105 (6%)

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           ++   ++             L    + GK  I I RFKGLGEM + QL ET +D  KRTL
Sbjct: 709 KLIVKSQEFDILTPSQL---LNTIIECGKRGINIQRFKGLGEMNSDQLWETTLDPTKRTL 765

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           L+V +      + + +   + LMG   + R  FIQ  A  + ++ 
Sbjct: 766 LQVRV----AEIDEAEGIFSTLMGDVVEPRRLFIQANALNVVNLD 806


>gi|300021544|ref|YP_003754155.1| DNA gyrase subunit beta [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523365|gb|ADJ21834.1| DNA gyrase, B subunit [Hyphomicrobium denitrificans ATCC 51888]
          Length = 815

 Score =  492 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 234/580 (40%), Positives = 339/580 (58%), Gaps = 17/580 (2%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEV 89
            +         D+Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN +DEV
Sbjct: 2   TAQPLKKMPEPDDYGADSIKMLKGLDAVRKRPGMYIGDTDDGSGLHHMIYEVVDNGIDEV 61

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNS 146
           +AG+A   EV+L+ +G  TV D+GRGIP        + P +S  EI+ T LHAGGKFD +
Sbjct: 62  LAGHAKSCEVTLNPDGSCTVRDDGRGIPTGIKRDDDQDPKRSAAEIVFTELHAGGKFDQN 121

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS  L   + R       +F+ G  ++PL+       +RGT 
Sbjct: 122 SYKVSGGLHGVGVSVVNALSSWLKCRIWRDGKEHFVEFNNGNTVAPLKVVGDANGERGTE 181

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           ++F P  + F +   FD A L    +  A+L+   K   +  +    K        F + 
Sbjct: 182 VSFLPSTETFHNVTEFDFATLEHRLRELAFLNSGAKIVLTDARHADVKRQE-----FVYE 236

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG   +++    ++S    +      EK G    TVE A+ W +     +  + N I   
Sbjct: 237 GGTAAFVRYLDRSKSSALPDPIMILGEKDGI---TVEAALWWNDTYHETVLCFTNNIPQR 293

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R ALTR + KYAE T    K  +S+  DD       +LSV + +P+F+ QT
Sbjct: 294 DGGTHLAGFRSALTRIVNKYAEETGLAKKEKVSLSGDDAREGLTCVLSVKVPDPKFSSQT 353

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKT 442
           K KLVS + +  VE+A+ D    +  ++P EA  ++  ++E +  R   RK R+   RK 
Sbjct: 354 KDKLVSSEVKPVVESAVGDQLGAWFEEHPKEAKVIVGKIVEAALAREAARKARDLTRRKG 413

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+  LRLPG LA+C    A  TE+FIVEGDSAGGSAKQ R R  QAVLP+RGKILNV  A
Sbjct: 414 ALDGLRLPGGLAECQDRDASKTEVFIVEGDSAGGSAKQGRKREFQAVLPIRGKILNVERA 473

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
            ++K+ +++Q+ +++ ALG        + + LRY KVIIMTDADVDGAHI +LLLTFFY+
Sbjct: 474 RTDKMLSSEQVTNIIAALGTGIGRDEFKLDKLRYHKVIIMTDADVDGAHIRTLLLTFFYR 533

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +M +L+++ H+++  PPL+++ +G    Y  DE   +  L
Sbjct: 534 QMPELVDKGHVYIAQPPLYKVARGKAQSYLKDERALEDYL 573



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 4/88 (4%)

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           + +L    + G+  IE+ R+KGLGEM   QL ET +D + RTLL+V++      L +  +
Sbjct: 731 RSLLTAVYETGRKGIELQRYKGLGEMNPEQLWETTLDPDVRTLLQVKVGD----LAEADE 786

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
              KLMG   + R +FIQE A  + ++ 
Sbjct: 787 IFAKLMGDVVEPRREFIQENALNVSNLD 814


>gi|305432569|ref|ZP_07401730.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Campylobacter coli
           JV20]
 gi|304444280|gb|EFM36932.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Campylobacter coli
           JV20]
          Length = 770

 Score =  492 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 237/569 (41%), Positives = 331/569 (58%), Gaps = 20/569 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY AS+I++L+GLE VR RPGMYIG T+   LHH+  EV+DN++DE +AG+ + I++ +
Sbjct: 3   ENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVDNSIDEAMAGHCDTIDIEI 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV+ HP   N  TL ++LT LHAGGKFD  TY++SGGLHGVG+SV
Sbjct: 63  TTEGSCIVSDNGRGIPVDMHP-TENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS +L  TV R   I+ Q+FS G  +S      K +   GT I F PD  IF     
Sbjct: 122 VNALSKKLIATVERNGEIYRQEFSEGKVISEFGVIGKSKK-TGTTIEFWPDDTIFEV-TE 179

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L K  +  AYL+ ++   +  ++       + + E F+F GG+  ++    +  +
Sbjct: 180 FDYDILAKRFRELAYLNPKITINFKDNR-------VGKSESFHFEGGISQFVSDLNKKEA 232

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340
           L     F+   E        VE A+ + +   E   S+ N I T +GGTHE+G R+ LTR
Sbjct: 233 LTKPIFFSVDEED-----VNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTR 287

Query: 341 GIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  Y E      ++   I  DD+    + ++SV + EP+F GQTK KL S   +  V  
Sbjct: 288 VISNYIEANASAREKDSKITGDDVREGLIAVVSVKVPEPQFEGQTKGKLGSSYVRPIVSK 347

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
           A  +    Y  +NPIEA  ++   +  +  R   +K RE   +K ++    LPGKLADC 
Sbjct: 348 ASFEYLSKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQ 407

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +E+++VEGDSAGGSAKQ R RS QA+LPLRGKILNV  A  +KI  ++QI +++
Sbjct: 408 SKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMI 467

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A GC     +    LRY K+IIMTDADVDG+HI +LLLTFF++ M +L+   H++L  P
Sbjct: 468 TAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQP 527

Query: 578 PLFRITQG-TKSVYAHDEEHKQKILEEFK 605
           PL+R  +G  K +Y  DE+     L E  
Sbjct: 528 PLYRYKKGQKKEIYLKDEKALNDYLIETG 556



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/179 (23%), Positives = 77/179 (43%), Gaps = 21/179 (11%)

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLT--FFYQEMYDL 566
           NN+++  +V+A   +         +   ++ I      +G  +  L++    F      L
Sbjct: 610 NNEELFKIVKAFLEKEGHNILNHYINENEIRIYV-QTENG--LEELIINDDLFSH---PL 663

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            E+ + ++ +          + +    E+    IL+E +K+ K    I R+KGLGEM   
Sbjct: 664 YEEAN-YIFN------KIKDRDLSF--EKDILDILDEVEKNAKKGAYIQRYKGLGEMNPE 714

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           QL ET MD + R LL++ I       +   D+ N  MG + + R  +IQ  A  +  + 
Sbjct: 715 QLWETTMDPSVRRLLKITIED----AQSANDTFNLFMGDEVEPRRDYIQTHAKDVKHLD 769


>gi|76788912|ref|YP_327998.1| DNA gyrase subunit B [Chlamydia trachomatis A/HAR-13]
 gi|237804536|ref|YP_002888690.1| DNA gyrase subunit B [Chlamydia trachomatis B/TZ1A828/OT]
 gi|76167442|gb|AAX50450.1| DNA gyrase subunit B [Chlamydia trachomatis A/HAR-13]
 gi|231272836|emb|CAX09745.1| DNA gyrase subunit B [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 804

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 225/580 (38%), Positives = 332/580 (57%), Gaps = 18/580 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +    YDAS+I +LEGL+ VR RPGMYIG T    LHHL  EV+DN++DE +AG+   + 
Sbjct: 3   AQEKKYDASAITVLEGLQAVRERPGMYIGDTGVTGLHHLVYEVVDNSIDEAMAGFCTEVV 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFP-----NKSTLEIILTTLHAGGKFDNSTYEISGG 153
           V +  +G +++ DNGRGIP++ H K         S LE++LT LHAGGKFD  +Y++SGG
Sbjct: 63  VRILEDGGISISDNGRGIPIQIHEKESAKQGREISALEVVLTVLHAGGKFDKDSYKVSGG 122

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+S VNALS++    V +    +S +FSRG PL+ L+      +KRGT + F PDP
Sbjct: 123 LHGVGVSCVNALSEKFIAKVFKDGQAYSMEFSRGAPLTTLQVLGPT-DKRGTEVLFYPDP 181

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF     FD A L+K  +  A+L+  V   +  D++        +K  F++ GG+++++
Sbjct: 182 AIFSTCV-FDRAILMKRLRELAFLNRGVTIVFEDDRD-----TGFDKVVFFYEGGIQSFV 235

Query: 274 QTKLENRSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHE 331
               +N+ ++       +  + G       E A+ W     E I SY N I T +GGTH 
Sbjct: 236 SYLNQNKEILFPNPIYMQGSRPGDDGDIEFEAALQWNSGYSELIYSYANNIPTRQGGTHL 295

Query: 332 SGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G   ALTR +  Y +     ++    +  +D+    V I+SV +  P+F GQTK KL +
Sbjct: 296 TGFSTALTRAVNSYIKAHNLSKSDKLSLTGEDIKEGLVAIVSVKVPNPQFEGQTKQKLGN 355

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN-RKTAIRKLR 448
            D     +    +    +  +NP  A  +++ V   ++ R   ++ RE+  RK+A+   R
Sbjct: 356 SDVGSVSQQISGEVLTTFFEENPQIAKTIVDKVFVAAQAREAAKRARELTLRKSALDSAR 415

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKL DC +      E++IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  +K+ 
Sbjct: 416 LPGKLIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKVF 475

Query: 509 NNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
            NQ+I  ++ ALGC           LRY+++IIMTDADVDG+HI +LLLTFFY+ M  LI
Sbjct: 476 QNQEIGSIIAALGCGIGKDNFNLSKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHMSALI 535

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607
           E + +++  PPL+R+++     Y   E+     L      
Sbjct: 536 ENECVYIAQPPLYRVSKKKDFRYILSEKEMDGYLLNLGTK 575



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 9/97 (9%)

Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
            +     +++++  K  G+  IEI R+KGLGEM A QL +T M+  +RTL+RV +   + 
Sbjct: 714 CYT---LKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAV- 769

Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFI--DDVG 685
              +       LMG +   R +FI+  A  I  +++ 
Sbjct: 770 ---EADHIFTMLMGEEVPPRREFIESHALSIRMNNLD 803


>gi|73539709|ref|YP_294229.1| DNA gyrase subunit B [Ralstonia eutropha JMP134]
 gi|72117122|gb|AAZ59385.1| DNA gyrase subunit B [Ralstonia eutropha JMP134]
          Length = 841

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 229/595 (38%), Positives = 344/595 (57%), Gaps = 38/595 (6%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94
            N    + Y ASSI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +AGY 
Sbjct: 5   QNPQQENTYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYC 64

Query: 95  NLIEVSLDGNGFLTVVDNGRGIP--VENHPKFP-NKSTLEIILTTLHAGGKFDNSTYEIS 151
             I V++  +  +++VDNGRGIP  V+   K    +S  EI +T LHAGGKF+ ++Y++S
Sbjct: 65  TEITVTIHSDNSISIVDNGRGIPPLVKFDDKHEPKRSAAEIAMTELHAGGKFNQNSYKVS 124

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG-----------------IPLSPLE 194
           GGLHGVG+S VNALS  L +TV R   +   +F++G                 + +SP++
Sbjct: 125 GGLHGVGVSCVNALSKWLRLTVRRDGKVHLIEFAKGDVQNRIIETVNGPDGQPVEVSPMK 184

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
                 +KRGT + F  D +IF +   F    L K  +  ++L+  V       +     
Sbjct: 185 IIGDT-DKRGTEVHFLADEEIFTNV-EFHYEILSKRIRELSFLNNGVHIKLVDQR----- 237

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313
               ++E+F F GG+K +++     ++++   IF    EK G     VE ++ W +    
Sbjct: 238 --TGKEEDFAFSGGVKGFVEYINRAKTVLHPNIFYANAEKDGI---AVEVSMQWNDGYNE 292

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
           ++  + N I   +GGTH +GLR A+TR I KY E  +   K  +    DD+      +LS
Sbjct: 293 QVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEENEIAKKAKVETSGDDMREGLACVLS 352

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V + EP+F+ QTK KLVS + +  VE  +    + +L++ P +A  +   +++ +  R  
Sbjct: 353 VKVPEPKFSSQTKDKLVSSEVRLPVEELVSKALNDFLLETPNDAKTICGKIVDAARAREA 412

Query: 432 RRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            RK RE+ R+   +  + LPGKLADC +     +ELF+VEGDSAGGSAKQ R+R  QA+L
Sbjct: 413 ARKAREMTRRKGVMDGMGLPGKLADCQEKDPAQSELFLVEGDSAGGSAKQGRDRKFQAIL 472

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGA 549
           PL+GKILNV  A  +K+ ++Q+++ L+ ALG          + LRY ++IIMTDADVDG+
Sbjct: 473 PLKGKILNVERARFDKMLSSQEVLTLITALGTGIGKDDYNLDKLRYHRIIIMTDADVDGS 532

Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           HI +LLLTFFY++M D+IE+ ++++  PPL++I  G +  Y  D+      L + 
Sbjct: 533 HIRTLLLTFFYRQMPDIIERGYVYIAQPPLYKIKHGKEERYIKDDVELNAYLLKL 587



 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 4/93 (4%)

Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652
                   ++      +  +   R+KGLGEM   QL ET +D  +R LL+V+I   +   
Sbjct: 752 TVNDFHGAMQWLLSEAERGVSRQRYKGLGEMNPEQLFETTLDVTQRRLLKVQIEDAI--- 808

Query: 653 KDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
                    LMG + + R  FI+  A    ++ 
Sbjct: 809 -AADQIFTTLMGDEVEPRRNFIESNALVARNID 840


>gi|15604910|ref|NP_219694.1| DNA gyrase subunit B [Chlamydia trachomatis D/UW-3/CX]
 gi|255310990|ref|ZP_05353560.1| DNA gyrase subunit B [Chlamydia trachomatis 6276]
 gi|255317291|ref|ZP_05358537.1| DNA gyrase subunit B [Chlamydia trachomatis 6276s]
 gi|6647525|sp|O84193|GYRB_CHLTR RecName: Full=DNA gyrase subunit B
 gi|3328595|gb|AAC67782.1| DNA Gyrase Subunit B [Chlamydia trachomatis D/UW-3/CX]
 gi|296435705|gb|ADH17879.1| DNA gyrase subunit B [Chlamydia trachomatis G/9768]
 gi|296436629|gb|ADH18799.1| DNA gyrase subunit B [Chlamydia trachomatis G/11222]
 gi|296437565|gb|ADH19726.1| DNA gyrase subunit B [Chlamydia trachomatis G/11074]
 gi|297140064|gb|ADH96822.1| DNA gyrase subunit B [Chlamydia trachomatis G/9301]
 gi|297748320|gb|ADI50866.1| DNA gyrase subunit B [Chlamydia trachomatis D-EC]
 gi|297749200|gb|ADI51878.1| DNA gyrase subunit B [Chlamydia trachomatis D-LC]
          Length = 804

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 225/580 (38%), Positives = 332/580 (57%), Gaps = 18/580 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +    YDAS+I +LEGL+ VR RPGMYIG T    LHHL  EV+DN++DE +AG+   + 
Sbjct: 3   AQEKKYDASAITVLEGLQAVRERPGMYIGDTGVTGLHHLVYEVVDNSIDEAMAGFCTEVV 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFP-----NKSTLEIILTTLHAGGKFDNSTYEISGG 153
           V +  +G +++ DNGRGIP++ H K         S LE++LT LHAGGKFD  +Y++SGG
Sbjct: 63  VRILEDGGISISDNGRGIPIQIHEKESAKQGREISALEVVLTVLHAGGKFDKDSYKVSGG 122

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+S VNALS++    V +    +S +FSRG PL+ L+      +KRGT + F PDP
Sbjct: 123 LHGVGVSCVNALSEKFIAKVFKDGQAYSMEFSRGAPLTTLQVLGPT-DKRGTEVLFYPDP 181

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF     FD A L+K  +  A+L+  V   +  D++        +K  F++ GG+++++
Sbjct: 182 AIFSTCV-FDRAILMKRLRELAFLNRGVTIVFEDDRD-----TGFDKVVFFYEGGIQSFV 235

Query: 274 QTKLENRSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHE 331
               +N+ ++       +  + G       E A+ W     E I SY N I T +GGTH 
Sbjct: 236 SYLNQNKEILFPNPIYMQGSRPGDDGDIEFEAALQWNSGYSELIYSYANNIPTRQGGTHL 295

Query: 332 SGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G   ALTR +  Y +     ++    +  +D+    V I+SV +  P+F GQTK KL +
Sbjct: 296 TGFSTALTRAVNSYIKAHNLSKSDKLSLTGEDIKEGLVAIVSVKVPNPQFEGQTKQKLGN 355

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN-RKTAIRKLR 448
            D     +    +    +  +NP  A  +++ V   ++ R   ++ RE+  RK+A+   R
Sbjct: 356 SDVGSVSQQISGEVLTTFFEENPQIAKTIVDKVFVAAQAREAAKRARELTLRKSALDSAR 415

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKL DC +      E++IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  +K+ 
Sbjct: 416 LPGKLIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKVF 475

Query: 509 NNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
            NQ+I  ++ ALGC           LRY+++IIMTDADVDG+HI +LLLTFFY+ M  LI
Sbjct: 476 QNQEIGSIIAALGCGIGKDNFNLSKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHMSALI 535

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607
           E + +++  PPL+R+++     Y   E+     L      
Sbjct: 536 ENECVYIAQPPLYRVSKKKDFRYILSEKEMDGYLLNLGTK 575



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 9/97 (9%)

Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
            +     +++++  K  G+  IEI R+KGLGEM A QL +T M+  +RTL+RV +   + 
Sbjct: 714 CYT---LKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAV- 769

Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFI--DDVG 685
              +       LMG +   R +FI+  A  I  +++ 
Sbjct: 770 ---EADHIFTMLMGEEVPPRREFIESHALSIRMNNLD 803


>gi|254522716|ref|ZP_05134771.1| DNA gyrase, B subunit [Stenotrophomonas sp. SKA14]
 gi|219720307|gb|EED38832.1| DNA gyrase, B subunit [Stenotrophomonas sp. SKA14]
          Length = 819

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 234/583 (40%), Positives = 346/583 (59%), Gaps = 21/583 (3%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVI 90
           S      + + NYDA+SI  LEGLE VR RPGMYIG   D   LHH+  EV+DN++DE +
Sbjct: 2   SDEQNTPANNGNYDANSITALEGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSIDEAL 61

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFP-----NKSTLEIILTTLHAGGKFDN 145
           AG+A+ + V++  +G ++V DNGRGIP   H +         S  E+++T LHAGGKFD+
Sbjct: 62  AGHADHVAVTIHTDGSVSVSDNGRGIPTGKHEQMSAKLGREVSAAEVVMTVLHAGGKFDD 121

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +L V V +    + Q+FS G  ++PL K E     RGT
Sbjct: 122 NSYKVSGGLHGVGVSVVNALSQKLLVDVFQNGFHYQQEFSNGAAVTPLAKLETTTK-RGT 180

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            + F P    F D   F    L +  +  ++L+  VK   + ++          +++F++
Sbjct: 181 TVRFWPSTVAFHDNVEFHYDILARRLRELSFLNSGVKIVLADERGD------GRRDDFHY 234

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG++++++   + ++ +   + +   E        V+ A+ W +     +  + N I  
Sbjct: 235 EGGIRSFVEHLAQLKTPLHPNVISVTGEHNNI---VVDVALQWTDSYQETMYCFTNNIPQ 291

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTR +  Y E     +   I++  DD+    + +LSV + +P F+ Q
Sbjct: 292 KDGGTHLAGFRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQ 351

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TK KLVS D +  VENA     + +L +NP EA  +   +++ +  R   RK R+   RK
Sbjct: 352 TKEKLVSSDVRPAVENAFGARLEEFLQENPNEAKAIAGKIVDAARAREAARKARDLTRRK 411

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            A+    LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR NQAVLPLRGKILNV  
Sbjct: 412 GALDIAGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVER 471

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +++ ++ Q+  L+ ALG    R +Y  + LRY K+IIMTDADVDGAHI +LLLTFFY
Sbjct: 472 ARFDRMLSSDQVGTLITALGTGIGRDEYNPDKLRYHKIIIMTDADVDGAHIRTLLLTFFY 531

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEE 603
           ++M +LIE+ ++++  PPL++I QG + +Y  D+      L  
Sbjct: 532 RQMPELIERGYVYIGLPPLYKIKQGKQELYLKDDPALDSYLAS 574



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 17/143 (11%)

Query: 549 AHIASLLLTFFYQ------EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILE 602
            HI  L ++ F             +    +   +     I++G KS+        Q  L 
Sbjct: 687 QHIQVLPMSAFESGELRAIHQASKLLHGLIREGAT----ISRGAKSIEVDSFAKAQNWLL 742

Query: 603 EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKL 662
           E  K G+   +I RFKGLGEM   QL +T ++   R LL+V I   +          + L
Sbjct: 743 EEAKRGR---QIQRFKGLGEMNPEQLWDTTVNPETRRLLQVRIEDAV----AADQIFSTL 795

Query: 663 MGTKADERFKFIQERASFIDDVG 685
           MG   + R  FI++ A  + ++ 
Sbjct: 796 MGDVVEPRRDFIEDNALKVANLD 818


>gi|296134507|ref|YP_003641749.1| DNA gyrase, B subunit [Thiomonas intermedia K12]
 gi|294338443|emb|CAZ86769.1| DNA gyrase subunit B [Thiomonas sp. 3As]
 gi|295794629|gb|ADG29419.1| DNA gyrase, B subunit [Thiomonas intermedia K12]
          Length = 827

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 227/587 (38%), Positives = 338/587 (57%), Gaps = 30/587 (5%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95
           N+  +D+Y  +SI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +AG+ +
Sbjct: 2   NEPKNDSYSENSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGFCD 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
            I V++  +  ++V DNGRGIP          P +S  EI LT LHAGGKF+ ++Y++SG
Sbjct: 62  DIVVTIHSDNSISVTDNGRGIPTGVKMDDKHEPKRSAAEIALTELHAGGKFNQNSYKVSG 121

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK-----------EKVRN 201
           GLHGVG+S VNALS  L + V R   + + +F RG   +   +                +
Sbjct: 122 GLHGVGVSCVNALSQWLRLVVRRDGEVHTLEFVRGALQNRQTQMIDGVEVSVAPITGKTD 181

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           KRGT + F PD +IF     F    L K  +  ++L+  VK     +++  E       E
Sbjct: 182 KRGTEVHFLPDAEIFTTV-DFHYEVLAKRLRELSFLNHGVKIRLVDERQGKE-------E 233

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK--KGTHRGTVEWAIAWCEEN-PEITSY 318
            F F GG+K +++     +S++   IF  + EK  +     +VE ++ W +     +  +
Sbjct: 234 NFAFSGGVKGFVEYINRGKSVLHPNIFYAQAEKASEVGSTISVEVSMQWNDGYAETVQCF 293

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +GLR A+TR + KY +  +   K  + I  DD+      +LSV + +
Sbjct: 294 TNNIPQRDGGTHLTGLRAAMTRVMNKYIDDNELAKKAKVEISGDDMREGLTCVLSVKVPD 353

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F+ QTK KLVS + +  VE+ +      YL++ P +A  +   +I+ +  R   RK R
Sbjct: 354 PKFSSQTKDKLVSSEVRGPVEDLVAKALSDYLLETPTDAKIICGKIIDAARAREAARKAR 413

Query: 437 EVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E+ R+   +  L LPGKLADC +      EL++VEGDSAGGSAKQ R+R  QA+LPLRGK
Sbjct: 414 EMTRRKGVMDGLGLPGKLADCQEKDPALCELYLVEGDSAGGSAKQGRDRKFQAILPLRGK 473

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           ILNV  A  EK+  + +I+ L+ A+G    +  +  + LRY ++IIMTDADVDGAHI +L
Sbjct: 474 ILNVEKARFEKLLTSNEILTLITAMGTSIGKDDFNIDKLRYHRIIIMTDADVDGAHIRTL 533

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           LLTFF+++M +++E+ H+++  PPL+++  G    Y  D       L
Sbjct: 534 LLTFFFRQMPEIVERGHIYIAQPPLYKVKHGKDEQYLKDASELDAYL 580



 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ ++   +  +  +   R+KGLGEM   QL ET MD   R LLRV+I+  +    +  
Sbjct: 742 FREAMDWLIRQAENTVGRQRYKGLGEMNPEQLWETTMDPAVRRLLRVQIDDAI----EAD 797

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG + + R  FI+  A    ++ 
Sbjct: 798 RVFTMLMGDEVEPRRDFIETNALRAANLD 826


>gi|57504599|ref|ZP_00370711.1| DNA gyrase, B subunit [Campylobacter coli RM2228]
 gi|57019494|gb|EAL56188.1| DNA gyrase, B subunit [Campylobacter coli RM2228]
          Length = 770

 Score =  492 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 237/569 (41%), Positives = 331/569 (58%), Gaps = 20/569 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY AS+I++L+GLE VR RPGMYIG T+   LHH+  EV+DN++DE +AG+ + I++ +
Sbjct: 3   ENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVDNSIDEAMAGHCDTIDIEI 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV+ HP   N  TL ++LT LHAGGKFD  TY++SGGLHGVG+SV
Sbjct: 63  TTEGSCIVSDNGRGIPVDMHP-TENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS +L  TV R   I+ Q+FS G  +S      K +   GT I F PD  IF     
Sbjct: 122 VNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSKK-TGTTIEFWPDDTIFEV-TE 179

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L K  +  AYL+ ++   +  ++       + + E F+F GG+  ++    +  +
Sbjct: 180 FDYDILAKRFRELAYLNPKITINFKDNR-------VGKSESFHFEGGISQFVSDLNKKEA 232

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340
           L     F+   E        VE A+ + +   E   S+ N I T +GGTHE+G R+ LTR
Sbjct: 233 LTKPIFFSVDEED-----VNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTR 287

Query: 341 GIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  Y E      ++   I  DD+    + ++SV + EP+F GQTK KL S   +  V  
Sbjct: 288 VISNYIEANASAREKDSKITGDDVREGLIAVVSVKVPEPQFEGQTKGKLGSSYVRPIVSK 347

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
           A  +    Y  +NPIEA  ++   +  +  R   +K RE   +K ++    LPGKLADC 
Sbjct: 348 ASFEYLSKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQ 407

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +E+++VEGDSAGGSAKQ R RS QA+LPLRGKILNV  A  +KI  ++QI +++
Sbjct: 408 SKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMI 467

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A GC     +    LRY K+IIMTDADVDG+HI +LLLTFF++ M +L+   H++L  P
Sbjct: 468 TAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQP 527

Query: 578 PLFRITQG-TKSVYAHDEEHKQKILEEFK 605
           PL+R  +G  K +Y  DE+     L E  
Sbjct: 528 PLYRYKKGQKKEIYLKDEKALNDYLIETG 556



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/179 (23%), Positives = 77/179 (43%), Gaps = 21/179 (11%)

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLT--FFYQEMYDL 566
           NN+++  +V+A   +         +   ++ I      +G  +  L++    F      L
Sbjct: 610 NNEELFKIVKAFLEKEGHNILNHYINENEIRIYV-QTENG--LEELIINDDLFSH---PL 663

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            E+ + ++ +          + +    E+    IL+E +K+ K    I R+KGLGEM   
Sbjct: 664 YEEAN-YIFN------KIKDRDLSF--EKDILDILDEVEKNAKKGAYIQRYKGLGEMNPE 714

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           QL ET MD + R LL++ I       +   D+ N  MG + + R  +IQ  A  +  + 
Sbjct: 715 QLWETTMDPSVRRLLKITIED----AQSANDTFNLFMGDEVEPRRDYIQTHAKDVKHLD 769


>gi|160900517|ref|YP_001566099.1| DNA topoisomerase IV subunit B [Delftia acidovorans SPH-1]
 gi|160366101|gb|ABX37714.1| DNA topoisomerase (ATP-hydrolyzing) [Delftia acidovorans SPH-1]
          Length = 660

 Score =  492 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 234/670 (34%), Positives = 342/670 (51%), Gaps = 38/670 (5%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
             + +++  Y   SIR+L+GLEPV+ RPGMY   T      H+  EVIDNA DE +AG+ 
Sbjct: 4   KPSPTSASEYSEGSIRVLKGLEPVKQRPGMY---TRTDNPLHVLQEVIDNAADEALAGFG 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA---GGKFDNSTYEIS 151
             I  +L  +G  +V D+GRGIP   HP+      +E++ T LHA     K     Y  S
Sbjct: 61  KKIRFTLHSDGSYSVEDDGRGIPFGMHPE-EKAPVVELVFTRLHAGGKFDKGKGGAYSFS 119

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR--GTRITF 209
           GGLHGVG+SV NAL+  L   + R+  + +  FS G  + PL+ +     +R  GT +  
Sbjct: 120 GGLHGVGVSVTNALATRLEACIHREGKVATIAFSGGDVVEPLQSRPLAAGERKQGTTVRV 179

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD   + +        L+ + +SKA L   V      +K           + + F GGL
Sbjct: 180 WPDA-RYFESPQLPMGELMHLLRSKAVLMPGVSVTLVNEKTRD-------TQTWQFKGGL 231

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW----CEENPEITSYCNTILTD 325
           + YLQ  L   ++I      G  ++        E A        +  P   SY N I T 
Sbjct: 232 RDYLQQSLHGEAVIPLFEGEGFADRHHDSFAEGEGAAWCVAFTEDGAPLRESYVNLIPTT 291

Query: 326 EGGTHESGLRVALTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
            GGTH+SGLR  L + +K + E+     + + ++ DD+   A  +L+  + +P+F GQ K
Sbjct: 292 AGGTHDSGLRDGLFQAVKAFIEMHSLLPKGVKLMPDDVFARASYVLNAKVLDPQFQGQIK 351

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI 444
            +L S DA R V   +R   + +L ++     KL E  I+ ++ R +  ++ E  + + +
Sbjct: 352 ERLNSRDAVRLVSGYVRPALELWLNEHVEWGRKLAEIAIKAAQTRQKAGQKVEKRKGSGV 411

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
             L  PGKL DC        E+F+VEGDSAGGSAK  RN+  QAVLPLRGK+LN      
Sbjct: 412 AVL--PGKLTDCESRDLSLNEVFLVEGDSAGGSAKMGRNKETQAVLPLRGKVLNTWEVDR 469

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
           +++  N +I D+  A+G          D   LRY KV I++DADVDG+HI  LLLT F++
Sbjct: 470 DRLFANNEIHDISVAIGVDPHGPNDTPDLSGLRYGKVCILSDADVDGSHIQVLLLTLFFR 529

Query: 562 EMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKIE 613
               LIE  H+ +  PPLFR+    +G K    +YA DE     IL++  K G  + K +
Sbjct: 530 HFPKLIEAGHIHVALPPLFRVDVPARGKKPAAKMYALDEGELTAILDKSAKDGVPREKCQ 589

Query: 614 ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFK 672
           ISRFKGLGEM A QL ET ++ + R LL V+           +  + KLMG  +A  R +
Sbjct: 590 ISRFKGLGEMNAEQLWETTLNPDTRRLLPVQFMN--LDFAAAEQVVTKLMGKGEAAARRE 647

Query: 673 FIQERASFID 682
            ++     I+
Sbjct: 648 LMELHGDAIE 657


>gi|240139126|ref|YP_002963601.1| DNA gyrase, subunit B (type II topoisomerase) [Methylobacterium
           extorquens AM1]
 gi|254561720|ref|YP_003068815.1| DNA gyrase subunit B [Methylobacterium extorquens DM4]
 gi|240009098|gb|ACS40324.1| DNA gyrase, subunit B (type II topoisomerase) [Methylobacterium
           extorquens AM1]
 gi|254268998|emb|CAX24959.1| DNA gyrase, subunit B (type II topoisomerase) [Methylobacterium
           extorquens DM4]
          Length = 815

 Score =  492 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 230/587 (39%), Positives = 344/587 (58%), Gaps = 23/587 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
             N   +D+Y A SIR+L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+
Sbjct: 4   SPNTEHADSYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMIYEVVDNAIDEALAGH 63

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+L+ V+L+ +G +TV DNGRGIP + H +    S  E+I+T LHAGGKFD ++Y++SGG
Sbjct: 64  ADLVTVTLNADGSVTVSDNGRGIPTDIHRE-EGVSAAEVIMTQLHAGGKFDQNSYKVSGG 122

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS  L + + R       +F  G  ++PLE      ++RGT +TF P  
Sbjct: 123 LHGVGVSVVNALSTSLKLRIWRGGKEHRMEFRHGDAVAPLEVVGPAGDRRGTEVTFLPST 182

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           + F     FD   L K  +  A+L+  V+   +  +    K      EE  + GG++ ++
Sbjct: 183 ETFT-MTEFDYPTLEKRLRELAFLNSGVRIVVTDARHAEHKR-----EELCYEGGVEAFV 236

Query: 274 QTKLENRSLIS--SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +    +R  +   ++  T   E+ G     VE A+ W +     +  + N I   +GGTH
Sbjct: 237 RYLDRSRKPVDGMTKPVTVLGERDGI---RVEVALWWNDSFNETVLPFTNNIPQRDGGTH 293

Query: 331 ESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  YAE +   +   +    DD       ++SV + +P+F+ QTK KLV
Sbjct: 294 MAGFRAALTRQLTGYAESSGIAKREKVSLTGDDCREGLTAVISVQVPDPKFSSQTKDKLV 353

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATK-LLEWVIERSEERLRRRKQREVNRKTAIRKL 447
           S + +  VEN L +    +L +NP +A   + + V+  +     R+ +  + RK A+   
Sbjct: 354 SSEVRPAVENILNEGLSTWLEENPAQAKSVMGKVVLAAAAREAARKARETITRKGALDIA 413

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +      EL +VEGDSAGGSAKQ R+R+ QAVLPLRGKILNV    ++++
Sbjct: 414 SLPGKLADCQERDPSKCELLLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERVRADRM 473

Query: 508 RNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
            ++ +I  L+ ALG         R  +  + LRY ++IIMTDADVDG+HI +LLLTFF++
Sbjct: 474 LSSAEIGTLITALGAGIGRSSTDREGFNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFFR 533

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +M +LIE+ HL++  PPL++  +G + +Y  DE   +  L +    G
Sbjct: 534 QMPELIERGHLYIAQPPLYKAERGRRVLYLKDERALEDYLIDQGVEG 580



 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 7/96 (7%)

Query: 593 DEEHKQK---ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDL 649
           DE        + E     G+  +++ R+KGLGEM A QL ET +D + R+LL+V++    
Sbjct: 723 DETELYGPVGLFEAVMAFGRKGLQLQRYKGLGEMTAQQLWETTLDRDVRSLLQVKV---- 778

Query: 650 NSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
               D  D   KLMG   + R +FIQE A  + ++ 
Sbjct: 779 KDTTDADDLFVKLMGDVVEPRREFIQENALSVANLD 814


>gi|163851998|ref|YP_001640041.1| DNA gyrase, B subunit [Methylobacterium extorquens PA1]
 gi|163663603|gb|ABY30970.1| DNA gyrase, B subunit [Methylobacterium extorquens PA1]
          Length = 815

 Score =  492 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 230/587 (39%), Positives = 344/587 (58%), Gaps = 23/587 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
             N   +D+Y A SIR+L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+
Sbjct: 4   SPNTEHADSYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMIYEVVDNAIDEALAGH 63

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+L+ V+L+ +G +TV DNGRGIP + H +    S  E+I+T LHAGGKFD ++Y++SGG
Sbjct: 64  ADLVTVTLNADGSVTVSDNGRGIPTDIHRE-EGVSAAEVIMTQLHAGGKFDQNSYKVSGG 122

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS  L + + R       +F  G  ++PLE      ++RGT +TF P  
Sbjct: 123 LHGVGVSVVNALSTSLKLRIWRGGKEHRMEFRHGDAVAPLEVVGPAGDRRGTEVTFLPST 182

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           + F     FD   L K  +  A+L+  V+   +  +    K      EE  + GG++ ++
Sbjct: 183 ETFT-MTEFDYPTLEKRLRELAFLNSGVRIVVTDARHAEHKR-----EELCYEGGVEAFV 236

Query: 274 QTKLENRSLIS--SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +    +R  +   ++  T   E+ G     VE A+ W +     +  + N I   +GGTH
Sbjct: 237 RYLDRSRKPVDGMTKPVTVLGERDGI---RVEVALWWNDSFNETVLPFTNNIPQRDGGTH 293

Query: 331 ESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  YAE +   +   +    DD       ++SV + +P+F+ QTK KLV
Sbjct: 294 MAGFRAALTRQLTGYAESSGIAKREKVSLTGDDCREGLTAVISVQVPDPKFSSQTKDKLV 353

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATK-LLEWVIERSEERLRRRKQREVNRKTAIRKL 447
           S + +  VEN L +    +L +NP +A   + + V+  +     R+ +  + RK A+   
Sbjct: 354 SSEVRPAVENILNEGLSTWLEENPAQAKSVMGKVVLAAAAREAARKARETITRKGALDIA 413

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +      EL +VEGDSAGGSAKQ R+R+ QAVLPLRGKILNV    ++++
Sbjct: 414 SLPGKLADCQERDPSKCELLLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERVRADRM 473

Query: 508 RNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
            ++ +I  L+ ALG         R  +  + LRY ++IIMTDADVDG+HI +LLLTFF++
Sbjct: 474 LSSAEIGTLITALGAGIGRSSTDREGFNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFFR 533

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +M +LIE+ HL++  PPL++  +G + +Y  DE   +  L +    G
Sbjct: 534 QMPELIERGHLYIAQPPLYKAERGRRVLYLKDERALEDYLIDQGVEG 580



 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 7/96 (7%)

Query: 593 DEEHKQK---ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDL 649
           DE        + E     G+  +++ R+KGLGEM A QL ET +D + R+LL+V++    
Sbjct: 723 DETELYGPVGLFEAVMAFGRKGLQLQRYKGLGEMTAQQLWETTLDRDVRSLLQVKV---- 778

Query: 650 NSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
               D  D   KLMG   + R +FIQE A  + ++ 
Sbjct: 779 KDTTDADDLFVKLMGDVVEPRREFIQENALSVANLD 814


>gi|312794752|ref|YP_004027674.1| DNA gyrase subunit B [Burkholderia rhizoxinica HKI 454]
 gi|312166527|emb|CBW73530.1| DNA gyrase subunit B (EC 5.99.1.3) [Burkholderia rhizoxinica HKI
           454]
          Length = 843

 Score =  492 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 238/610 (39%), Positives = 343/610 (56%), Gaps = 31/610 (5%)

Query: 19  SSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHL 77
           SS + +K          AN SA ++Y  SSI+ILEGLE VR RPGMYIG T D   LHHL
Sbjct: 8   SSTQNRKKFMTEQHNLQANSSADNSYGESSIQILEGLEAVRKRPGMYIGDTSDGTGLHHL 67

Query: 78  FSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIIL 134
             EV+DN++DE +AG+ N I V +  +  ++V DNGRGIP +        P +S  EI++
Sbjct: 68  VFEVLDNSIDEALAGHCNDIHVVIHADNSISVTDNGRGIPTDIKRDDKHEPKRSAAEIVM 127

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFD ++Y++SGGLHGVG+S VNALS  L +TV R       +F RG+    + 
Sbjct: 128 TELHAGGKFDQNSYKVSGGLHGVGVSCVNALSKWLRLTVRRGGKKHFLEFHRGVVQERVL 187

Query: 195 KKEK-----------VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           ++                 RGT + F  D  IFG    +    L K  +  ++L+  V+ 
Sbjct: 188 EQRDGEQVSPMLLIGDTENRGTEVHFLADDTIFGTV-EYHYDILAKRMRELSFLNNGVRI 246

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
             +  +   E         F F GG+K +++   + +  +   IF    EK G     VE
Sbjct: 247 RLTDQRSGKEDD-------FAFAGGVKGFVEYINKTKQTLHQNIFHVVGEKDGV---GVE 296

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISD 360
            A+ W +     +  + N I   +GGTH +GLR A+TR I KY   T+   K  I    D
Sbjct: 297 VAMQWNDSFNENVLCFTNNIPQRDGGTHMTGLRAAMTRVINKYITDTEIAKKAKIETTGD 356

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D+      +LSV + EP+F+ QTK KLVS + +  VE  +    + YL++ P +A  +  
Sbjct: 357 DMREGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEQYLLETPNDAKVICG 416

Query: 421 WVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
            +++ +  R   RK RE+ R+   +  + LPGKLADC +     +E++IVEGDSAGGSAK
Sbjct: 417 KIVDAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAK 476

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKV 538
           Q R+R  QA+LPLRGK+LNV  A  +K+ ++ QI+ L+ ALGC         E LRY ++
Sbjct: 477 QGRDRKFQAILPLRGKVLNVEKARYDKLLSSDQIVTLITALGCGIGKDDYNLEKLRYHRI 536

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQ 598
           IIMTDADVDGAHI +LLLTFFY++M ++IE+ ++++  PPLF++  G    Y  D+    
Sbjct: 537 IIMTDADVDGAHIRTLLLTFFYRQMPEMIERGYVYIAQPPLFKLKAGKDERYLKDQHELN 596

Query: 599 KILEEFKKHG 608
           + + +   HG
Sbjct: 597 QHMLKLALHG 606



 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             +  ++      +  +   R+KGLGEM   QL ET MD   R LLRV+I   +      
Sbjct: 757 DFKSAMKWLIADAERNVSKQRYKGLGEMNPEQLWETTMDPAVRRLLRVQIEDAI----AA 812

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
                 LMG + + R  FI+  A    ++ 
Sbjct: 813 DGIFTTLMGDEVEPRRAFIESNALRAGNID 842


>gi|229586917|ref|YP_002845418.1| DNA gyrase subunit B [Rickettsia africae ESF-5]
 gi|228021967|gb|ACP53675.1| DNA gyrase subunit B [Rickettsia africae ESF-5]
          Length = 807

 Score =  492 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 229/566 (40%), Positives = 331/566 (58%), Gaps = 14/566 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
             +Y A SI++L+GLE VR RPGMYIG   +   LHH+  EV+DNA+DE +AGY +L+ V
Sbjct: 10  ESSYGADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNAIDESLAGYCDLVRV 69

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L+ NG +TV DNGRGIPVE H +    S  E+I+T LHAGGKFD + Y+++GGLHGVG+
Sbjct: 70  TLNKNGSVTVSDNGRGIPVEIHGE-EGISAAEVIMTQLHAGGKFDQNAYKVAGGLHGVGV 128

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+ L + + R N  +  +F+ GI  +PL   ++  +K+GT +TF P  + F + 
Sbjct: 129 SVVNALSEWLELRIWRNNKEYLMRFNNGITEAPLAVVKENIDKKGTEVTFFPSVETFTNI 188

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             FD   +    +  A+L+  VK     ++    K        FY+ GG++ Y++     
Sbjct: 189 -EFDFGTIEHRLRELAFLNSGVKILLVDNRFEEVKEVE-----FYYTGGIEAYVKYIDRA 242

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  I          +      ++E A+ W +     I  + N I   +GGTH S  + A+
Sbjct: 243 KHAIHP--CIVVNTENAESGISLELAMHWNDSYHENILCFTNNIRQRDGGTHLSAFKSAI 300

Query: 339 TRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR I  Y + T   +        +D       +LSV + +P+F+ QTK KLVS + +  V
Sbjct: 301 TRVITSYLDTTGLNKKAKNYFSGEDTREGLCCVLSVKVPDPKFSSQTKDKLVSSEVRPVV 360

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
           ENA+      +  ++P EA  ++  ++E +  R   RK RE   RK+A+    LPGKLAD
Sbjct: 361 ENAVYTKVLEWFEEHPAEAKAIIAKIMEAANAREAARKARELTRRKSALEVSNLPGKLAD 420

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C       +ELFIVEGDSAGG+AKQ R+   QA+LPLRGKILNV  A  +K+  + QI  
Sbjct: 421 CHAKDPAISELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGSDQIGT 480

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           L+ ALG     ++  E LRY KVIIMTDADVDG+HI +LLLTFFY+ M +LI + +L++ 
Sbjct: 481 LITALGISVEREFSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPELINKGYLYIA 540

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKIL 601
            PPL+++ +G    Y  +E+  Q  L
Sbjct: 541 QPPLYKVKKGAAEFYLKNEQALQDYL 566



 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           ++L    + GK  I I RFKGLGEM + QL ET +D  KRTLL+V +      + + +  
Sbjct: 724 QLLNTIIECGKRGINIQRFKGLGEMNSDQLWETTLDPTKRTLLQVRV----AEIDEAEGI 779

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            + LMG   + R  FIQ  A  + ++ 
Sbjct: 780 FSTLMGDVVEPRRLFIQANALNVVNLD 806


>gi|299136177|ref|ZP_07029361.1| DNA gyrase, B subunit [Acidobacterium sp. MP5ACTX8]
 gi|298602301|gb|EFI58455.1| DNA gyrase, B subunit [Acidobacterium sp. MP5ACTX8]
          Length = 880

 Score =  492 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 223/601 (37%), Positives = 344/601 (57%), Gaps = 21/601 (3%)

Query: 29  IPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDE 88
              + +         Y   +I ILEGL  VR+RP MYIG T E+ LHHL  EV+DN++DE
Sbjct: 7   PAAANSQTPPPQPGTYTGENITILEGLAAVRLRPAMYIGSTGEQGLHHLVYEVVDNSVDE 66

Query: 89  VIAGYANLIEVSLDGNGFLTVVDNGRGIPVE--NHPKFPNKSTLEIILTTLHAGGKFDNS 146
            +AG+A  I+V++  +  +TVVD+GRGIPV+    P       ++++LT LHAGGKFD S
Sbjct: 67  ALAGHATRIDVTIHVDNSITVVDDGRGIPVDNKTLPTGETMPAVQVVLTMLHAGGKFDAS 126

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
            Y++SGGLHGVG+S VNALS+E  V + R    +   +S+G P+S L K    +  RGT+
Sbjct: 127 NYKVSGGLHGVGVSCVNALSEEFDVEIWRDGFTWEMDYSKGDPISELRKMGPSKR-RGTK 185

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F PD  IF     ++   L    +  A+L+  ++   + ++++  K    + + + + 
Sbjct: 186 IHFLPDKTIFTV-TEYNFDTLANRLRQLAFLNKGIEISLTDERQVDTKG-ETKSQVYKYT 243

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+  +++   + + ++  +    +TE+       +E A+ + +     + S+ N I T 
Sbjct: 244 GGIAEFIKLLNKGKQVLHEKPIYMETEQGNV---VMEIALQYNDAYSETVFSFANNINTV 300

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH SG R ALTR I    +     + +  ++  DD+    V ++SV + +P+F GQT
Sbjct: 301 DGGTHLSGFRTALTRTINVAGQQLGLFKDVKENLSGDDVREGLVAVVSVKLPQPQFEGQT 360

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKT 442
           K KL + D    V+  + +    +L QNP  A K++   I+ S  R   RK R+   RK 
Sbjct: 361 KGKL-NSDIAGQVQAFVNERLGAFLEQNPSVARKIINKAIDASRAREAARKARDLTRRKG 419

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADCS+      EL++VEG+SAGG+AKQ R+R  QA+LPL+GKILNV  A
Sbjct: 420 ALDGGGLPGKLADCSERRPELCELYLVEGESAGGTAKQGRDRKFQAILPLKGKILNVEKA 479

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
             +K+  +++I  ++ ALG        +   LRY K+I+MTDADVDG+HI +LLLTFF++
Sbjct: 480 RYDKMLGHEEIRAMITALGTGIGKDDFDTAKLRYGKLILMTDADVDGSHIRTLLLTFFFR 539

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
            M +LI++ H+++  PPLFRI +G    Y  DE    +++ +    G     I R+   G
Sbjct: 540 HMQELIKRGHVYIAQPPLFRIKKGKFEQYIKDEREYVQVMVKRASDGM----IIRY---G 592

Query: 622 E 622
           E
Sbjct: 593 E 593



 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 4/88 (4%)

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           +++ E   + G+ + ++ R+KGLGEM A QL +T MD  +RTLL+V++      +  T++
Sbjct: 796 REVFEYVIEQGRKEYQVQRYKGLGEMTAPQLWDTTMDPARRTLLQVKLED----IAATEE 851

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
               LMG   + R KFI+E A  + ++ 
Sbjct: 852 IFTTLMGEDVESRRKFIEENALDVKNLD 879


>gi|188474271|gb|ACD49735.1| DNA gyrase subunit B [Vibrio campbellii]
          Length = 778

 Score =  492 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 219/551 (39%), Positives = 334/551 (60%), Gaps = 17/551 (3%)

Query: 56  EPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGR 114
           + VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I V++  +  ++V D+GR
Sbjct: 1   DAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIVVTIHEDNSVSVTDDGR 60

Query: 115 GIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA 174
           GIP E HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ 
Sbjct: 61  GIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVVLTIH 119

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   I +Q +  G P +PL    +  ++ GT+I F P  + F +   F    L K  +  
Sbjct: 120 RGGHIHTQTYHHGEPQAPLAVIGET-DQTGTQIRFWPSAETFTNI-EFHYDILAKRLREL 177

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      ++E        + + F F GG++ +++    N++ I  +IF    E+
Sbjct: 178 SFLNSGVSIKLVDEREAD------KSDHFMFEGGIQAFVEHLNTNKTPIIEKIFHFDFER 231

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
           +      VE A+ W +     I  + N I   +GGTH +G R ALTR +  + +      
Sbjct: 232 ED--GIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNTFMDKEGFSK 289

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +L++N
Sbjct: 290 KAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIEN 349

Query: 412 PIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P EA  +   +I+ +  R   RK R    RK A+    LPGKLADC +     +EL+IVE
Sbjct: 350 PTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVE 409

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYR 529
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y 
Sbjct: 410 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYN 469

Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV 589
            + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++  PPL+++ +G +  
Sbjct: 470 PDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPPLYKVKKGKQEQ 529

Query: 590 YAHDEEHKQKI 600
           Y  DE+   + 
Sbjct: 530 YIKDEDAMNQY 540



 Score =  123 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 7/94 (7%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G ++            LE   K  +  + + R+KGLGEM   QL ET MD   R ++
Sbjct: 692 IKRGERTQPVSS---FASALEWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMM 748

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675
           +V I   +            LMG + + R  F++
Sbjct: 749 QVTIEDAVG----ADQLFTTLMGDQVEPRRNFME 778


>gi|319785624|ref|YP_004145099.1| DNA gyrase subunit beta [Pseudoxanthomonas suwonensis 11-1]
 gi|317464136|gb|ADV25868.1| DNA gyrase, B subunit [Pseudoxanthomonas suwonensis 11-1]
          Length = 811

 Score =  492 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 234/574 (40%), Positives = 345/574 (60%), Gaps = 18/574 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94
              S    YD+S I +L GLE VR RPGMYIG   D   LHH+  EV+DN++DE +AG+A
Sbjct: 5   TPSSTPGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSIDEALAGHA 64

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           N + V +  +G + V DNGRGIPV+ H K   +S  E+ILT LHAGGKFD+++Y++SGGL
Sbjct: 65  NEVIVRILEDGSVAVSDNGRGIPVDTH-KEEGRSAAEVILTVLHAGGKFDDNSYKVSGGL 123

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS+ L + + R    + Q++S G PL PL++ E   +KRGT + F+P  +
Sbjct: 124 HGVGVSVVNALSEHLWLDIWRDGFHWQQEYSLGEPLYPLKQLEP-SDKRGTSLRFKPAVE 182

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L +  +  ++L+  VK     ++          ++ F + GG++++++
Sbjct: 183 IFTDV-QFHYEILARRLRELSFLNSGVKVTLIDERG------EGRQDTFQYEGGIRSFVE 235

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              + ++ +   + +   E  G     VE A+ W +     +  + N I   +GGTH +G
Sbjct: 236 HLAQLKTPLHPNVISVSGEHNGI---VVEVALQWTDAYQETMFCFTNNIPQKDGGTHLAG 292

Query: 334 LRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y E     +        DD+    + +LSV + +P F+ QTK KLVS +
Sbjct: 293 FRAALTRTLTNYIEQNGLAKQAKVSFSGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSE 352

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VEN      + +L ++P EA  ++E V++ +  R   RK RE   RK A+    LP
Sbjct: 353 VKPAVENTFGARLEEFLQEHPQEAKAIVEKVVDAARAREAARKARELTRRKGALDIAGLP 412

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +ELFIVEGDSAGGSAKQ RNR NQAVLPLRGKILNV  A  +++ ++
Sbjct: 413 GKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLSS 472

Query: 511 QQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
            ++  L+ ALG    + +Y  + LRY ++IIMTDADVDG+HI +LLLTFFY++M +L+E+
Sbjct: 473 AEVGTLITALGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELLER 532

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEE 603
            H+++  PPL++I QG + +Y  D+      L  
Sbjct: 533 GHVYIGLPPLYKIKQGKQELYLKDDAALDAYLAS 566



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G +S         Q  L +  K G+   +I RFKGLGEM   QL ET ++ + R LL
Sbjct: 714 VIRGNRSQAVTSFAEAQAWLMDEAKKGR---QIQRFKGLGEMNPEQLWETTVNPDTRRLL 770

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           RV I   +          + LMG   + R +FI+  A  + ++ 
Sbjct: 771 RVRIEDAV----AADQIFSTLMGDVVEPRREFIENNALKVANLD 810


>gi|19909689|dbj|BAB87040.1| DNA gyrase subunit B [Halorubrum saccharovorum]
          Length = 594

 Score =  492 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 227/606 (37%), Positives = 332/606 (54%), Gaps = 18/606 (2%)

Query: 68  GTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNK 127
            TD + LHHL  EV+DN++DE +AGY + I V++  +  ++V D+GRGIPV+ H K+ ++
Sbjct: 1   STDGRGLHHLVYEVVDNSIDEALAGYCDEITVTIHDDNSVSVSDDGRGIPVDTHEKY-DR 59

Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187
             LE+I+T LHAGGKFD+ +Y++SGGLHGVG+SVVNALS+ L V V R   ++  +F RG
Sbjct: 60  PALEVIMTVLHAGGKFDSKSYQVSGGLHGVGVSVVNALSERLEVEVKRDGGVYRHEFHRG 119

Query: 188 IP--LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
            P        ++    + GT I F PD +IF     F+ + L    +  A+L+  V    
Sbjct: 120 EPAEDGFERVRDLDDEETGTYIRFWPDEEIFETT-AFEFSTLANRLRELAFLNSGVAVSL 178

Query: 246 SCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
             +++         +             +   E R+ I  E+   + E+   H   VE A
Sbjct: 179 VDERDEGPSTTRATRRRSATRRHS-GVRRLLNETRTPIHDEVIYFEDEQDDIH---VEVA 234

Query: 306 IAWCEE-NPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDL 362
           +   EE    + ++ N I T EGGTH +G + ALTR +  YA           ++  +D+
Sbjct: 235 MQATEELQGSVHAFANNINTREGGTHLTGFKTALTRTVNDYANEHGLVDDLDANLKGEDV 294

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
                 ++SV   +P+F GQTKTKL + + +  VE+A  +    +  +NP  A K++   
Sbjct: 295 REGLTAVISVKHPDPQFEGQTKTKLGNSEVRGIVESATHEKLGTFFEENPDTARKVVHKA 354

Query: 423 IERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
            E +  R   +K  E   RK+A+    LPGKLADC        ELF+VEGDSAGGSAKQ 
Sbjct: 355 AEAARARKAAKKAEELTRRKSALESTALPGKLADCQTRDPTEAELFVVEGDSAGGSAKQG 414

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541
           RNR NQA+LPL+GKILNV     ++I  N +I  L+ A+G     ++  +D+RY K+IIM
Sbjct: 415 RNRENQAILPLKGKILNVEKHRLDRILENDEIRALITAIGAGIGEEFDIDDVRYNKIIIM 474

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           TDADVDGAHI +LLLT  Y+ M  L+E  +++   PPL+R+    ++  A  EE + +I+
Sbjct: 475 TDADVDGAHIRTLLLTLLYRHMKPLLEAGYVYAAQPPLYRVRNRGETYDAMTEEERDRIV 534

Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
            E  K      ++ RFKGLGEM   QL +T MD   R L R+ +    +         N 
Sbjct: 535 AE--KCDGDPDQVQRFKGLGEMNPDQLWDTTMDPENRRLKRINV----HDAAAADRMFNV 588

Query: 662 LMGTKA 667
           LMG   
Sbjct: 589 LMGDAV 594


>gi|303246810|ref|ZP_07333087.1| DNA gyrase, B subunit [Desulfovibrio fructosovorans JJ]
 gi|302491827|gb|EFL51707.1| DNA gyrase, B subunit [Desulfovibrio fructosovorans JJ]
          Length = 810

 Score =  492 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 232/584 (39%), Positives = 333/584 (57%), Gaps = 26/584 (4%)

Query: 30  PDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEV 89
               A         YDASSI +LEGL  VR RP MYIG TD + LHHL  EV+DN++DE 
Sbjct: 2   SQDNAPQASHGPQAYDASSITVLEGLSAVRKRPAMYIGSTDSRGLHHLVWEVVDNSIDES 61

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
           +AG+ + I V++  +  +TV DNGRGIPV+ HPK  ++  +E+++T LHAGGKFDN TY+
Sbjct: 62  MAGFCDRIVVTIHLDNSVTVSDNGRGIPVDMHPK-EHRPAVEVVMTVLHAGGKFDNETYK 120

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS+ L VTV R      Q++ RG+P++PL    +  +  GT I F
Sbjct: 121 VSGGLHGVGVSVVNALSEYLEVTVRRDGKKHQQRYERGVPVTPLTVIGEA-DVTGTTIRF 179

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +PD +IF     F+   L+K  +  AYL+  ++  +  ++         E+  + F GGL
Sbjct: 180 KPDEEIFET-NQFNHDTLVKRFEELAYLNRGLEIDYRDER-------TNERVTYRFDGGL 231

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K ++         I   I  G  E  G      ++A+ +      E+ ++ N I T EGG
Sbjct: 232 KRFVADLNAGEQTIHDIID-GTGEIDGIVT---DFALQYNANYKEEVLTFANNIRTREGG 287

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G + ALTR I  Y E +   +        DD+      ++SV +  P+F GQTKTK
Sbjct: 288 THLAGFKTALTRAINTYIEKSDLPKKFKQKLTGDDVREGLTAVISVKLPGPQFEGQTKTK 347

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           L + +    V   + +  + +  +NP +A  ++E  ++ +  R   RK +E V RK A+ 
Sbjct: 348 LGNSEVAGIVAKVVFEAMNVHFEENPKDAKSIVEKAVDAARAREAARKAKELVRRKGALS 407

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC       +ELFIVEGDSAGGSAKQ R+   QA+LPLRGKILNV    ++
Sbjct: 408 DHSLPGKLADCQSKNPEESELFIVEGDSAGGSAKQGRDPRFQAILPLRGKILNVERTRTD 467

Query: 506 KIRNNQQIMDLVQALGCRTRS--------QYREEDLRYEKVIIMTDADVDGAHIASLLLT 557
           K+  N++I +L+ A+G                   LRY K++IMTDADVDGAHI +LLLT
Sbjct: 468 KMLGNKEIRNLITAMGPTPAMGEEDEEKEAENYARLRYHKIVIMTDADVDGAHIRTLLLT 527

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           FF++    LIE  ++++  PPL+R+ +G    +  D+E     L
Sbjct: 528 FFFRRYERLIENGYIYIAQPPLYRVFKGDFEKFIKDDEELSTFL 571



 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           ++ +         I I R+KGLGEM   QL ET M+  KR+ L+V I        D  D 
Sbjct: 727 ELYKALMDDALKGINIQRYKGLGEMNPEQLWETTMNPEKRSFLQVSIQDAG----DANDI 782

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            ++LMG K + R  FI+  A  + ++ 
Sbjct: 783 FDQLMGEKVEGRRTFIERNALTVRELD 809


>gi|194363782|ref|YP_002026392.1| DNA gyrase subunit B [Stenotrophomonas maltophilia R551-3]
 gi|194346586|gb|ACF49709.1| DNA gyrase, B subunit [Stenotrophomonas maltophilia R551-3]
          Length = 819

 Score =  492 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 232/583 (39%), Positives = 343/583 (58%), Gaps = 21/583 (3%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVI 90
           S      + + NYDA+SI  LEGLE VR RPGMYIG   D   LHH+  EV+DN++DE +
Sbjct: 2   SDEQNTPANNGNYDANSITALEGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSIDEAL 61

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFP-----NKSTLEIILTTLHAGGKFDN 145
           AG+A+ + V++  +G ++V DNGRGIP   H +         S  E+++T LHAGGKFD+
Sbjct: 62  AGHADHVAVTIHADGSVSVSDNGRGIPTGKHEQMSAKLGREVSAAEVVMTVLHAGGKFDD 121

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +L V V +    + Q+FS G  ++PL K E     RGT
Sbjct: 122 NSYKVSGGLHGVGVSVVNALSQKLLVDVFQGGFHYQQEFSNGAAVTPLAKLESTTK-RGT 180

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            + F P    F D   +    L +  +  ++L+  VK   + ++          +++F++
Sbjct: 181 TVRFWPSTVAFHDNVEYHYDILARRLRELSFLNSGVKIVLADERGD------GRRDDFHY 234

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG++++++   + ++ +   + +   E        V+ A+ W +     +  + N I  
Sbjct: 235 EGGIRSFVEHLAQLKTPLHPNVISVTGEHNNI---VVDVALQWTDSYQETMYCFTNNIPQ 291

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTR +  Y E     +   I++  DD+    + +LSV + +P F+ Q
Sbjct: 292 KDGGTHLAGFRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQ 351

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441
           TK KLVS D +  VENA     + +L +NP EA  +   +++ +  R   RK      RK
Sbjct: 352 TKEKLVSSDVRPAVENAFGARLEEFLQENPNEAKAIAGKIVDAARAREAARKARDLTRRK 411

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            A+    LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR NQAVLPLRGKILNV  
Sbjct: 412 GALDIAGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVER 471

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +++  + Q+  L+ ALG    R +Y  + LRY K+IIMTDADVDGAHI +LLLTFFY
Sbjct: 472 ARFDRMLASDQVGTLITALGTGIGRDEYNPDKLRYHKIIIMTDADVDGAHIRTLLLTFFY 531

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEE 603
           ++M +LIE+ ++++  PPL++I QG + +Y  D+      L  
Sbjct: 532 RQMPELIERGYVYIGLPPLYKIKQGKQELYLKDDPALDSYLAS 574



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I++G KS+        Q  L E  K G+   +I RFKGLGEM   QL +T ++   R LL
Sbjct: 722 ISRGAKSIEVDTFAKAQNWLLEEAKRGR---QIQRFKGLGEMNPEQLWDTTVNPETRRLL 778

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +          + LMG   + R  FI++ A  + ++ 
Sbjct: 779 QVRIEDAV----AADQIFSTLMGDVVEPRRDFIEDNALKVANLD 818


>gi|89898825|ref|YP_521296.1| DNA gyrase subunit B [Rhodoferax ferrireducens T118]
 gi|89343562|gb|ABD67765.1| DNA gyrase subunit B [Rhodoferax ferrireducens T118]
          Length = 870

 Score =  492 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 232/628 (36%), Positives = 348/628 (55%), Gaps = 43/628 (6%)

Query: 13  PPQSQGSSEKLKKSGEIPDSPAFANQS-------ASDNYDASSIRILEGLEPVRMRPGMY 65
           PP+++ + E    +GE     +    +       AS+ Y   SI+ILEGLE VR RPGMY
Sbjct: 10  PPENEVNGEDAVHTGEGASDSSNFQPTIDAHQIGASEAYGEGSIQILEGLEAVRKRPGMY 69

Query: 66  IGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---H 121
           IG T D   LHHL  EV+DN++DE +AG+ + I V++  +  ++VVDNGRGIP       
Sbjct: 70  IGDTSDGTGLHHLVFEVVDNSIDESLAGHCDDILVTIHSDNSVSVVDNGRGIPTGVKMDD 129

Query: 122 PKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFS 181
              P +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +T+ R   +  
Sbjct: 130 KHEPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKMLRLTIRRDGKVHV 189

Query: 182 QKFSRGIPLSPLE-----------KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
            +FSRG   + +            K      KRGT + F PD +IF   + F    L K 
Sbjct: 190 MEFSRGFVQNRVTEVVNGVEVSPMKVIGTTEKRGTEVHFLPDSEIFQQNSDFHYEILSKR 249

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  ++L+  V+     ++   E         F   GG++ ++    + +++++  IF  
Sbjct: 250 LRELSFLNNGVRIRLKDERSGKEDD-------FSGAGGVRGFVNFINKGKTVLNPNIFHA 302

Query: 291 KTEK--KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
             ++         VE A+ W      ++  + N I   +GGTH +GLR A+TR I KY +
Sbjct: 303 LGDRQSDQDTNIGVEVAMQWNSGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYID 362

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
            ++   K  + +  DD+      +LSV + EP+F+ QTK KLVS + +  VE+ +     
Sbjct: 363 DSELAKKAKVEVTGDDMREGLTCVLSVKVPEPKFSSQTKDKLVSSEVRGPVEDIVSKLLY 422

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGT 464
            YL + P +A  ++  +IE +  R   RK R++ R+   +  + LPGKLADC +      
Sbjct: 423 DYLQERPADAKIIVGKIIEAARAREAARKARDMTRRKGVLDGMGLPGKLADCQEKDPALC 482

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  EK+  + +I+ L+ ALG   
Sbjct: 483 EIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARYEKLLTSNEILTLITALGTGI 542

Query: 525 --------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
                      +    LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ H+++  
Sbjct: 543 GNAGGSTGSDDFNVAKLRYHRIIIMTDADVDGAHICTLLLTFFYRQMPELVERGHIYIAQ 602

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEF 604
           PPL+++  G + +Y  D +   + L   
Sbjct: 603 PPLYKVKAGKEELYLKDGDELDRFLLRI 630



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             ++ +       +      R+KGLGEM  +QL ET MD   R LLRV+I+  +    +T
Sbjct: 784 DFRQAMTWLLAQAEHATSRQRYKGLGEMNPAQLWETTMDPTVRRLLRVQIDDAI----ET 839

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
                 LMG + + R +FI+  A    ++ 
Sbjct: 840 DRVFTMLMGDEVEPRREFIEANALRAGNID 869


>gi|78776204|ref|YP_392519.1| DNA gyrase subunit B [Sulfurimonas denitrificans DSM 1251]
 gi|78496744|gb|ABB43284.1| DNA gyrase subunit B [Sulfurimonas denitrificans DSM 1251]
          Length = 769

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 233/586 (39%), Positives = 332/586 (56%), Gaps = 22/586 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY AS+I++L+GLE VR RPGMYIG T  + LHHL  EVIDN++DE +AGY N I V+L
Sbjct: 2   ENYGASNIKVLKGLEAVRKRPGMYIGDTGHRGLHHLVYEVIDNSIDEAMAGYCNTINVTL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIP + H +    S   ++LT LHAGGKFD  TY++SGGLHGVG+SV
Sbjct: 62  TKEGTCRVSDNGRGIPTDMH-EGEGMSAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS +L +T+ R   I  Q F +GIP   L      +    T I F PDP IF +   
Sbjct: 121 VNALSSDLKMTIQRNGEIHEQNFKKGIPQEALNVIGTTKKTG-TTIEFSPDPSIFTETVI 179

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F+   L +  +  AYL+  +   +  ++   +       EE++F GG+  Y+    + + 
Sbjct: 180 FEYEYLARRFKELAYLNPFITIIFKDERTNVK-------EEYHFEGGIAQYVTDLNKKQE 232

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
           +    +F+ K E       ++ +   +   + ++ S+ N I T  GGTHE+G R  LTR 
Sbjct: 233 VAKVFVFSSKIE-DIEFDISLMYNDTY---DEKVYSFVNNIRTPNGGTHEAGFRAGLTRV 288

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  Y        ++ + I  +D     + ++SV + EP+F GQTK KL +   +  V+ A
Sbjct: 289 ISNYNTQNGAAKEKDVKISGEDTSEGLIAVVSVRVPEPQFEGQTKGKLGNTYVRPLVQKA 348

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
             +    Y  +NPIEA  ++   +  +  R   +K RE   RK ++    LPGKLADC  
Sbjct: 349 TYELLSKYFEENPIEAKAIVAKSLMAARGREAAKKARELTRRKDSMSVGTLPGKLADCQS 408

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
             A   EL++VEGDSAGGSAK  R+R  QA+LPL+GKILNV  A  +KI  +++I +++ 
Sbjct: 409 KDASICELYLVEGDSAGGSAKMGRDRVFQAILPLKGKILNVEKARLDKILKSEEITNMIT 468

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+GC    +Y E+ LRY K+IIMTDADVDG+HI +LLLTFF++    +IE  +L+L  PP
Sbjct: 469 AMGCGIGEEYNEDKLRYHKLIIMTDADVDGSHIQTLLLTFFFRHFRSVIENGYLYLAQPP 528

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI------SRFK 618
           L+R  +G K +Y  D+      L E          +      S FK
Sbjct: 529 LYRYKKGKKEIYFKDDRAMNDFLIENGIESLEGQSVGHNDLLSYFK 574



 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 4/86 (4%)

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
           +L+   ++ K    I R+KGLGEM   QL ET M    R LL+V I+      +   D+ 
Sbjct: 687 VLDNIIEYAKKGSYIQRYKGLGEMNPDQLWETTMTPENRVLLQVTIDD----AELASDTF 742

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
              MG + + R  +I+  A  +  + 
Sbjct: 743 TLFMGDEVEPRRNYIETHAKDVKHLD 768


>gi|51473761|ref|YP_067518.1| DNA gyrase subunit B [Rickettsia typhi str. Wilmington]
 gi|81826298|sp|Q68WF6|GYRB_RICTY RecName: Full=DNA gyrase subunit B
 gi|51460073|gb|AAU04036.1| DNA gyrase [Rickettsia typhi str. Wilmington]
          Length = 807

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 235/566 (41%), Positives = 334/566 (59%), Gaps = 14/566 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
             +Y A SI++L+GLE VR RPGMYIG   +   LHH+  EV+DN++DE +AGY +LI V
Sbjct: 10  ESSYSADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNSIDEALAGYCDLIRV 69

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L+ NG +TV DNGRGIPVE H +    S  E+I+T LHAGGKFD  +Y+ISGGLHGVG+
Sbjct: 70  TLNKNGSVTVSDNGRGIPVEIHEE-EGISAAEVIMTQLHAGGKFDQHSYKISGGLHGVGV 128

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+ L + + R N  +  +F+ GI  +PL   ++  +K+GT +TF P   IF + 
Sbjct: 129 SVVNALSEWLELRIWRNNKEYFIRFNNGITEAPLSIVKENIDKKGTEVTFFPSVGIFTNI 188

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             FD   +    +  A+L+  VK     ++    K        F++ GG++ Y+Q     
Sbjct: 189 -EFDFVTIEHRLRELAFLNSGVKILLIDNRFEEVKKVE-----FFYTGGIEAYVQYIDRA 242

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  I          +      ++E AI W +     I  + N I   +GGTH S  + A+
Sbjct: 243 KHAIHP--CIVVNTEHVESGISLELAIHWNDSYHENILCFTNNIRQRDGGTHLSAFKSAI 300

Query: 339 TRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR I  Y + T    K       +D       +LSV + +P+F+ QTK KLVS + +  V
Sbjct: 301 TRVITSYLDTTGLNKKTKHDFSGEDTREGICCVLSVKVPDPKFSSQTKDKLVSSEVRPVV 360

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
           ENA+      +  ++PIEA  ++  ++E +  R   RK RE   RK+A+    LPGKLAD
Sbjct: 361 ENAVYTKVLEWFEEHPIEAKAIIAKIMEAANAREAARKARELTRRKSALEVSNLPGKLAD 420

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C       +ELFIVEGDSAGG+AKQ R+   QA+LPLRGKILNV  A  +K+ +++QI  
Sbjct: 421 CHAKDPAISELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLSSEQIGT 480

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           L+ ALG     ++  E LRY KVIIMTDADVDG+HI +LLLTFFY+ M +LI + +L++ 
Sbjct: 481 LITALGISVEREFSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPELINKGYLYIA 540

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKIL 601
            PPL+++  G   +Y  +E+  Q  L
Sbjct: 541 QPPLYKVKSGASELYLKNEQALQNYL 566



 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 8/104 (7%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G +     D     ++L    + GK  I I RFKGLGEM + QL +T +D  KRTLL
Sbjct: 711 IVKGKE----FDVVTPSQLLNTIIECGKKGITIQRFKGLGEMNSDQLWDTTLDPTKRTLL 766

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V +++    + + +   + LMG   + R  FIQ  A  + ++ 
Sbjct: 767 QVRVSE----VDEAEGIFSTLMGDVVEPRRLFIQANALNVMNLD 806


>gi|89898309|ref|YP_515419.1| DNA gyrase subunit B [Chlamydophila felis Fe/C-56]
 gi|89331681|dbj|BAE81274.1| DNA gyrase subunit B [Chlamydophila felis Fe/C-56]
          Length = 806

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 230/578 (39%), Positives = 333/578 (57%), Gaps = 18/578 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +   +YDAS+I +LEGL+ VR RPGMYIG T    LHHL  EV+DN++DE +AGY + I 
Sbjct: 3   AKEKSYDASAITVLEGLQAVRERPGMYIGDTGITGLHHLVYEVVDNSIDEAMAGYCSEIH 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNK-----STLEIILTTLHAGGKFDNSTYEISGG 153
           V +  +G +T+ DNGRGIP++ H K   K     S LE++LT LHAGGKFD  +Y++SGG
Sbjct: 63  VRILEDGGITISDNGRGIPIQVHEKESKKQGRDVSALEVVLTVLHAGGKFDKDSYKVSGG 122

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+S VNAL+ +L  TV +    +  +FSRGIPL+ L+       + GT ITF PD 
Sbjct: 123 LHGVGVSCVNALAKKLVATVYKDKQTYQMEFSRGIPLTSLQFLGATDKQ-GTEITFYPDD 181

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           KIF     FD + L+K  +  A+L+  V   +  D++++      +K  F++ GG+++++
Sbjct: 182 KIFSSCI-FDRSILIKRLRELAFLNRGVTIIFEDDRDVS-----FDKVVFFYEGGIQSFV 235

Query: 274 QTKLENRSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHE 331
               +N+  +  E       + G       E A+ W     E I SY N I T +GGTH 
Sbjct: 236 SYLNQNKESLFPEPIYIAGTRTGDDGEIEFEAALQWNSGYSELIYSYANNIPTRQGGTHL 295

Query: 332 SGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G   ALTR +  Y +     +     +  +D+      ++SV +  P+F GQTK KL +
Sbjct: 296 TGFSTALTRVLNAYIKAHNLAKNDKLSLTGEDIREGLTAVVSVKVPNPQFEGQTKQKLGN 355

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN-RKTAIRKLR 448
            D     +    +    +  +NP  A  ++E V   ++ R   +K RE+  RK+A+   R
Sbjct: 356 SDVGSVAQQITGEMLTTFFDENPQIAKMIVEKVFIAAQAREAAKKARELTLRKSALDSAR 415

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKL DC +      E++IVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +KI 
Sbjct: 416 LPGKLIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDHRFQAILPIRGKILNVEKARLQKIF 475

Query: 509 NNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
            NQ+I  ++ ALGC   S       LRY ++IIMTDADVDG+HI +LLLTFFY+ M  LI
Sbjct: 476 QNQEIGTIIAALGCGIGSDNFNLSKLRYRRIIIMTDADVDGSHIRTLLLTFFYRHMTALI 535

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605
           E + +++  PPL+++++     Y   E+     L    
Sbjct: 536 ENECVYIAQPPLYKVSKKKDFRYILSEKEMDDYLLTLG 573



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 6/96 (6%)

Query: 592 HDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651
           +     +++++  K  G+  IEI R+KGLGEM A QL +T M+  +RTL+RV +   +  
Sbjct: 714 YTCYTLKEVIDHLKALGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAV-- 771

Query: 652 LKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685
             +       LMG +   R +FI+  A  +   ++ 
Sbjct: 772 --EADHVFTMLMGEEVPPRREFIENHALSVKMNNLD 805


>gi|157825960|ref|YP_001493680.1| DNA gyrase subunit B [Rickettsia akari str. Hartford]
 gi|157799918|gb|ABV75172.1| DNA gyrase subunit B [Rickettsia akari str. Hartford]
          Length = 807

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 229/566 (40%), Positives = 334/566 (59%), Gaps = 14/566 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
             +Y A SI++L+GLE VR RPGMYIG   +   LHH+  EV+DNA+DE +AGY +L+ V
Sbjct: 10  ESSYGADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNAIDESLAGYCDLVRV 69

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L+ NG +TV DNGRGIPVE H +    S  E+I+T LHAGGKFD ++Y++SGGLHGVG+
Sbjct: 70  TLNKNGSVTVSDNGRGIPVEIHEE-EGTSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGV 128

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+ L + + R N  +  +F+ GI  +P+   ++  +K+GT +TF P  + F + 
Sbjct: 129 SVVNALSEWLELRIWRNNKEYLIRFNNGITAAPIAVVKENIDKKGTEVTFFPSAETFTNI 188

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             FD   +    +  A+L+  VK  +  ++    K        FY+ GG++ Y++     
Sbjct: 189 -EFDFGTIEHRLRELAFLNSGVKILFVDNRFEEVKEVE-----FYYMGGIEAYVKYIDRA 242

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  I          +      ++E A+ W +     I  + N I   +GGTH S  + A+
Sbjct: 243 KHAIHP--CIVVNTENADSGISLELAMHWNDSYHENIMCFTNNIRQRDGGTHLSAFKSAI 300

Query: 339 TRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR I  Y + T    K       +D       +LSV + +P+F+ QTK KLVS + +  V
Sbjct: 301 TRVITSYLDTTGLNKKFKNDFSGEDTREGLCCVLSVKVPDPKFSSQTKDKLVSSEVRPVV 360

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
           ENA+      +  ++P E+  ++  ++E +  R   RK RE   RK+A+    LPGKLAD
Sbjct: 361 ENAVYTKVLEWFEEHPAESKAIIAKIMEAANAREAARKARELTRRKSALEVSNLPGKLAD 420

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C       +ELFIVEGDSAGG+AKQ R+   QA+LPLRGKILNV  A  +K+  + QI  
Sbjct: 421 CHAKDPAISELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGSDQIGT 480

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           L+ ALG     ++  E LRY KVIIMTDADVDG+HI +LLLTFFY+ M +LI + +L++ 
Sbjct: 481 LITALGISVEREFSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPELINKGYLYIA 540

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKIL 601
            PPL+++ +G   +Y  +E+  Q  L
Sbjct: 541 QPPLYKVKKGAAELYLKNEQALQDYL 566



 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           ++L    + GK  I I RFKGLGEM + QL ET +D  KRTLL+V +      + + +  
Sbjct: 724 QLLNTIIECGKKGINIQRFKGLGEMNSDQLWETTLDPAKRTLLQVRV----AEVDEAEGI 779

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            + LMG   + R  FIQE A  + ++ 
Sbjct: 780 FSTLMGDVVEPRRLFIQENALNVMNLD 806


>gi|71907496|ref|YP_285083.1| DNA topoisomerase IV subunit B [Dechloromonas aromatica RCB]
 gi|71847117|gb|AAZ46613.1| DNA topoisomerase IV subunit B [Dechloromonas aromatica RCB]
          Length = 662

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 232/661 (35%), Positives = 349/661 (52%), Gaps = 38/661 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y A+SIR+L+ LEPV+ RPGMY   T      H+  EVIDNA DE +AG+A  I V++ 
Sbjct: 16  DYSAASIRVLKDLEPVKERPGMY---TRTTCPTHIVQEVIDNAADEALAGFAKKIAVAIR 72

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN----STYEISGGLHGVG 158
            +G + V DNGRGIPVE HP+   +  +E++   LHAGGKF+     + Y  SGGLHGVG
Sbjct: 73  ADGVIEVSDNGRGIPVEIHPE-EGRPAVELVFCKLHAGGKFNKKESGNAYRFSGGLHGVG 131

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFG 217
           +SV NALS  L V + R   I    F  G    PL +     +   GT +  +PDPK F 
Sbjct: 132 VSVTNALSIRLEVEIKRGGGIHHIAFGAGFVTEPLSRIGDCGQRNTGTTVRIQPDPKYFD 191

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
                +  +L  + +SKA L   V      + +  +         + +  G+  YL   +
Sbjct: 192 S-PKVNLGQLEHLLRSKAVLMPNVTVELDIEGQDKK--------VWCYENGMADYLNEMM 242

Query: 278 ENRSLIS--SEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHESGL 334
               +          +T           WA+AW EE   +  SY N I T +GGTHE+GL
Sbjct: 243 VGTPVAPIFVGEKYVETANGFAVGEGATWALAWFEEGGGKPESYVNLIPTLDGGTHEAGL 302

Query: 335 RVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
           +  +   IK +A+        + +  +D+      +LS  + +P+F GQTK KL S DA 
Sbjct: 303 KAGVFEAIKAFADHHAILPAKVKLAQEDVCGKMTYLLSAKVLDPQFQGQTKEKLTSRDAY 362

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
           + V   +RDPF+ +L  +     K+ E  ++ ++ R++  ++ E  + + I  L  PGKL
Sbjct: 363 KLVSQMVRDPFELWLNSHADFGKKIAELAVKAAQNRMKSTQKIEKKKSSGIATL--PGKL 420

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
            DC  +     E+F+VEGDSAGGSAKQ R++  QAVLPLRGK+LN      +++  N ++
Sbjct: 421 TDCESDDILRNEIFLVEGDSAGGSAKQGRDKETQAVLPLRGKVLNTWEVERDQLFKNNEV 480

Query: 514 MDLVQALGCRTRSQYREED-----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            D+  A+G       + +      LRY ++I+M+DADVDG+HI  LL T F +    L+E
Sbjct: 481 HDISVAVGVDPHGIEQIDSVDVTGLRYGRIIVMSDADVDGSHIQVLLFTLFLKHFPALVE 540

Query: 569 QKHLFLISPPLFRIT---QG-TKSVYAHDEEHKQKILEEFKKHG--KGKIEISRFKGLGE 622
           + H+ +  PPLFR+    +G T+ VY  DE  K++ L++    G  + KI +SRFKGLGE
Sbjct: 541 RGHIHVAQPPLFRVDVEARGHTRKVYCLDEAEKEQTLQKLADEGVSENKITVSRFKGLGE 600

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQERASFI 681
           M   QL ET +  + R L  V       ++K+   +   LMG  +A  R  ++++    +
Sbjct: 601 MNPDQLWETTLCPDTRRL--VPFQASRETIKEMATTFTLLMGKGEASGRRAWMEKDGGLV 658

Query: 682 D 682
           +
Sbjct: 659 E 659


>gi|51244501|ref|YP_064385.1| DNA gyrase, subunit B [Desulfotalea psychrophila LSv54]
 gi|50875538|emb|CAG35378.1| probable DNA gyrase, subunit B [Desulfotalea psychrophila LSv54]
          Length = 807

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 232/567 (40%), Positives = 338/567 (59%), Gaps = 11/567 (1%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  ++Y A  I++L+GLE VR RP MYIG T  + LHHL  E++DN++DE +AG+  LI+
Sbjct: 2   TEKNSYGAEQIKVLDGLEAVRKRPSMYIGNTGIEGLHHLIWEIVDNSIDEALAGHCQLIK 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++     +TV D+GRGIPV+ HP     S LE+++TTLHAGGKFD+S+Y++SGGLHGVG
Sbjct: 62  VTIHEGNKVTVEDDGRGIPVDIHP-VEKISALELVMTTLHAGGKFDHSSYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           ISVVNALS    V V R   ++ Q ++ G   S LE       + G+ +TF+ DP+IF +
Sbjct: 121 ISVVNALSSVAQVIVKRNGKMYRQTYAYGDKTSELEIIGDC-ERTGSIVTFQADPEIFTE 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              +D   +    +  A+L+  VK     ++  AE       EEF  PGG+ +Y+Q    
Sbjct: 180 STVYDYEVVKNRVRELAFLNMGVKIQLKDERSGAEDKFPE--EEFKLPGGVISYVQYLNR 237

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            R+ I +E      EK G     V+ A    +     + S+ N I T EGG+H +G R A
Sbjct: 238 KRTTIVAEPICIIGEKDGV---EVDIAFQHFDGYAERLFSFVNNINTREGGSHVAGFRSA 294

Query: 338 LTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LT+ + +YA      + +   +  DD+      ++SV +  P+F GQTKTKL + + +  
Sbjct: 295 LTKCMNRYANDDIIPKNLREKMSGDDIREGLTCVISVRVPNPQFEGQTKTKLGNTEVKSI 354

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           VE+   +    +L QNP  A K+L  V+E +  R   ++ R+++RK     L + GKLA+
Sbjct: 355 VESIASEKLSLFLEQNPQVAKKILFKVVEAARAREAAKRARDLSRKKGSTSLLMAGKLAE 414

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +      E+FIVEGDSAGGSAKQ R+RS QA+LPLRGKI+NV  A  +KI  +++I +
Sbjct: 415 CQEKDPAKREIFIVEGDSAGGSAKQGRDRSIQAILPLRGKIMNVEKARFDKILGSEEIKN 474

Query: 516 LVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALG        + E LRY KVIIMTDADVDGAHI +LLLTFFY++M  L++   +++
Sbjct: 475 LIAALGSGIGKDDFDVEKLRYHKVIIMTDADVDGAHIRTLLLTFFYRQMLPLVQGGFVYI 534

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKIL 601
             PPL+R+ +G K  Y  ++      L
Sbjct: 535 GQPPLYRLGRGKKEKYFLNDGELNHHL 561



 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +++  +        + R+KGLGEM   QL +T M+   R L++V+IN      +   D 
Sbjct: 724 DMVDTIRDESFKGSHLQRYKGLGEMNPEQLWDTTMNPENRVLVQVKIND----AEQADDM 779

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
              LMG K + R +FIQ  A  + D+ 
Sbjct: 780 FTTLMGDKVEPRREFIQNHALEVSDLD 806


>gi|218530751|ref|YP_002421567.1| DNA gyrase subunit beta [Methylobacterium chloromethanicum CM4]
 gi|218523054|gb|ACK83639.1| DNA gyrase, B subunit [Methylobacterium chloromethanicum CM4]
          Length = 815

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 230/587 (39%), Positives = 344/587 (58%), Gaps = 23/587 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
             N   +D+Y A SIR+L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+
Sbjct: 4   SPNTEHADSYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMIYEVVDNAIDEALAGH 63

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+L+ V+L+ +G +TV DNGRGIP + H +    S  E+I+T LHAGGKFD ++Y++SGG
Sbjct: 64  ADLVTVTLNADGSVTVSDNGRGIPTDIHRE-EGVSAAEVIMTQLHAGGKFDQNSYKVSGG 122

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS  L + + R       +F  G  ++PLE      ++RGT +TF P  
Sbjct: 123 LHGVGVSVVNALSTSLKLRIWRAGKEHRMEFRHGDAVAPLEVVGPAGDRRGTEVTFLPST 182

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           + F     FD   L K  +  A+L+  V+   +  +    K      EE  + GG++ ++
Sbjct: 183 ETFT-MTEFDYPTLEKRLRELAFLNSGVRIVVTDARHAEHKR-----EELCYEGGVEAFV 236

Query: 274 QTKLENRSLIS--SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +    +R  +   ++  T   E+ G     VE A+ W +     +  + N I   +GGTH
Sbjct: 237 RYLDRSRKPVDGMTKPVTVLGERDGI---RVEVALWWNDSFNETVLPFTNNIPQRDGGTH 293

Query: 331 ESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  YAE +   +   +    DD       ++SV + +P+F+ QTK KLV
Sbjct: 294 MAGFRAALTRQLTGYAESSGIAKREKVSLTGDDCREGLTAVISVQVPDPKFSSQTKDKLV 353

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATK-LLEWVIERSEERLRRRKQREVNRKTAIRKL 447
           S + +  VEN L +    +L +NP +A   + + V+  +     R+ +  + RK A+   
Sbjct: 354 SSEVRPAVENILNEGLSTWLEENPAQAKSVMGKVVLAAAAREAARKARETITRKGALDIA 413

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +      EL +VEGDSAGGSAKQ R+R+ QAVLPLRGKILNV    ++++
Sbjct: 414 SLPGKLADCQERDPSKCELLLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERVRADRM 473

Query: 508 RNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
            ++ +I  L+ ALG         R  +  + LRY ++IIMTDADVDG+HI +LLLTFF++
Sbjct: 474 LSSAEIGTLITALGAGIGRSSTDREGFNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFFR 533

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +M +LIE+ HL++  PPL++  +G + +Y  DE   +  L +    G
Sbjct: 534 QMPELIERGHLYIAQPPLYKAERGRRVLYLKDERALEDYLIDQGVEG 580



 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 7/96 (7%)

Query: 593 DEEHKQK---ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDL 649
           DE        + E     G+  +++ R+KGLGEM A QL ET +D + R+LL+V++    
Sbjct: 723 DETELYGPVGLFEAVMAFGRKGLQLQRYKGLGEMTAQQLWETTLDRDVRSLLQVKV---- 778

Query: 650 NSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
               D  D   KLMG   + R +FIQE A  + ++ 
Sbjct: 779 KDTTDADDLFVKLMGDVVEPRREFIQENALSVANLD 814


>gi|4099111|gb|AAD00550.1| topoisomerase II ParE [Mycoplasma arthritidis]
          Length = 614

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 220/626 (35%), Positives = 330/626 (52%), Gaps = 32/626 (5%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIG TD   LHHL  E++DNA+DE +AG+A  I+V+L  +  + V DNGRGIPV  H  
Sbjct: 1   MYIGSTDITGLHHLVWEIVDNALDEALAGFATDIKVTLKKDDSVIVEDNGRGIPVSKH-- 58

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
              K+ +E++ T LHAGGKFD   Y+ SGGLHGVG SVVNALS++L V V R    +   
Sbjct: 59  GSGKTGVELVFTELHAGGKFDEGVYKTSGGLHGVGSSVVNALSEKLIVKVYRDKKEYKTV 118

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           F +   +             GT++ F PD  IF     F +  + +  +  ++L   +K 
Sbjct: 119 FEQDKIIEGTNVVGPTTKH-GTKVQFWPDKTIFKKT-KFSSDIVKEKLREASFLIPNLKI 176

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
            ++ ++         E   F    G+K Y++   E ++ ISS  +   T KK      + 
Sbjct: 177 HFNHEES-------GEAITFEAAEGIKEYIKFVGEGKNFISSIFYAKGTFKKIEMEIALV 229

Query: 304 WAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDL 362
           +          I S+ N + T +GGTHE+  + ALT+ I +YA      K   +   DD+
Sbjct: 230 YTD---NYTENIYSFVNNVKTRDGGTHETAFKSALTKTINEYASQHNLLKNKNNFEGDDV 286

Query: 363 MISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
               + ++S+ I E   EF GQTK KL +L+A+  VE+   + F  YL +N +++ K+L 
Sbjct: 287 REGIIAVVSLKIPESILEFVGQTKDKLGTLEAREAVEDFFSEKFGFYLNENKLDSDKILN 346

Query: 421 WVIERSEERLRRRKQREVNRKTAIR---KLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
            + +  + R+  R  R   RK   +   K  L GKL       +   ELF+VEGDSAGGS
Sbjct: 347 KIKKSYDARMAARTARNEIRKIKNKLENKKILSGKLTPAQTKNSSLKELFLVEGDSAGGS 406

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  R  + QA+LPLRGK++N   A    I +N++I  ++  +G      +  ++ +Y K
Sbjct: 407 AKMGRAPNTQAILPLRGKVINTVKAKLTDILSNEEIATIINTIGAGIGQDFNIKNSQYGK 466

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT---KSVYAHDE 594
           +IIMTDAD DGAHI  LLLTFFY+ M  LI+   +++  PPL+++T      K  Y  D+
Sbjct: 467 IIIMTDADTDGAHIQVLLLTFFYRYMKKLIDAGMVYIALPPLYKLTVKGAKAKHFYVWDD 526

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
           +  + +  ++        EI R+KGLGEM   QL +T M+   R++LRV IN +      
Sbjct: 527 DELRDLTSKY-----SNYEIQRYKGLGEMNPDQLWDTTMNPETRSILRVRINDEG----L 577

Query: 655 TQDSINKLMGTKADERFKFIQERASF 680
           T+ ++  LM    + R  +I     F
Sbjct: 578 TERNVTTLMSDDINARKLWINTYVDF 603


>gi|296537346|ref|ZP_06899212.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Roseomonas
           cervicalis ATCC 49957]
 gi|296262326|gb|EFH09085.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Roseomonas
           cervicalis ATCC 49957]
          Length = 705

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 227/591 (38%), Positives = 341/591 (57%), Gaps = 14/591 (2%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85
            E   + + A +  +D YD++SI +L GLE VR RPGMYIG TD+   LHH+  E+IDNA
Sbjct: 2   SESARASSPAPEPQADAYDSASITVLRGLEAVRKRPGMYIGDTDDGSGLHHMAFEIIDNA 61

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE  AGYA   +V L+ +G +TV D+GRGIP + H +    S  E++LT LHAGGKF+ 
Sbjct: 62  VDEAQAGYATRCDVVLNADGSVTVTDDGRGIPTDIHAE-EGVSAAEVVLTRLHAGGKFNQ 120

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG +VVNALS+ + VT+ R       +F  G  + PL+      +K GT
Sbjct: 121 NSYKVSGGLHGVGAAVVNALSEWMDVTIWRNGQEHFLRFEHGDTVQPLKVVGPSDHKNGT 180

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           R+TF+P    F     ++ A L K  +  A+L+  +      ++ +A      E   F F
Sbjct: 181 RVTFKPSAGTFTRT-EYEFAILEKRLRELAFLNSGLAITLRDERPVALGEPAKET-AFRF 238

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILT 324
            GGL  +++    ++  +     + + ++       VE A+ W    +     + N I  
Sbjct: 239 EGGLVAFVEWLDRSKEPLFKPAISLRAKE--GTGIQVELAMWWNNSPHELALCFTNNIPQ 296

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
            +GGTH++G R ALTR + KYAE    K  + +  +D+      ++SV + +P+F+ QTK
Sbjct: 297 RDGGTHQAGFRQALTRVVMKYAEELAKKEKVELSGEDMREGLTAVISVKVPDPKFSSQTK 356

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTA 443
            KLVS + Q  V+ A+ D   H+   +P EA ++L+ V+  +  R   +    +V RK A
Sbjct: 357 DKLVSSEVQPVVQAAVADALSHWFETHPKEARQVLDQVVLAAAARKAAQLAREKVGRKNA 416

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +      ELF+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A 
Sbjct: 417 LDISTLPGKLADCQEKDPTKCELFLVEGDSAGGSAKQGRDRRFQAILPLKGKILNVERAR 476

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREE------DLRYEKVIIMTDADVDGAHIASLLLT 557
            +K+ ++ +I  L+ ALG    +   E        LRY +++IMTDADVDG+HI +LLLT
Sbjct: 477 IDKMLSSAEIGTLITALGTGIGTGPVERGGFSADKLRYHRIVIMTDADVDGSHIRTLLLT 536

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           FF+++M +L+ + HL++  PPL+R  +G +  Y  D+   +  L E   H 
Sbjct: 537 FFFRQMPELLARGHLYIAQPPLYRAKRGQEERYLKDDRALEDFLLEKALHN 587


>gi|187938361|gb|ACD38218.1| DNA gyrase subunit B [Vibrio harveyi]
          Length = 778

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 216/551 (39%), Positives = 330/551 (59%), Gaps = 17/551 (3%)

Query: 56  EPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGR 114
           + VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I V++  +  ++V D+GR
Sbjct: 1   DAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIVVTIHEDNSVSVTDDGR 60

Query: 115 GIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA 174
           GIP E HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ 
Sbjct: 61  GIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVVLTIH 119

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   I +Q +  G P +PL       ++ GT+I F P  +       F    L K  +  
Sbjct: 120 RGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAET-STNIEFHYDILAKRLREL 177

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      ++E        + + F F GG++ +++    N++ I  +IF    E+
Sbjct: 178 SFLNSGVSIKLVDEREAD------KSDHFMFEGGIQAFVEHLNTNKTPIIEKIFHFDFER 231

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
           +      VE A+ W +     I  + N I   +GGTH +G R ALTR +  + +      
Sbjct: 232 ED--GIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNTFMDKEGFSK 289

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE+++ +    +L++N
Sbjct: 290 KAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESSMGEKLSEFLIEN 349

Query: 412 PIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P EA  +   +I+ +  R   RK R    RK A+    LPGK ADC +     +EL+IVE
Sbjct: 350 PTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKFADCQEKDPALSELYIVE 409

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYR 529
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y 
Sbjct: 410 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYN 469

Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV 589
            + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++  PPL+++ +G +  
Sbjct: 470 PDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPPLYKVKKGKQEQ 529

Query: 590 YAHDEEHKQKI 600
           Y  DE+   + 
Sbjct: 530 YIKDEDAMNQY 540



 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 7/92 (7%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G ++            LE   K  +  + + R+KGLGEM   QL ET MD   R ++
Sbjct: 692 IKRGERTQPVSS---FASALEWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMM 748

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKF 673
           +V I   +            LMG + + R  F
Sbjct: 749 QVTIEDAVG----ADQLFTTLMGDQVEPRRNF 776


>gi|188581760|ref|YP_001925205.1| DNA gyrase, B subunit [Methylobacterium populi BJ001]
 gi|179345258|gb|ACB80670.1| DNA gyrase, B subunit [Methylobacterium populi BJ001]
          Length = 815

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 231/587 (39%), Positives = 346/587 (58%), Gaps = 23/587 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
             N   +++Y A SIR+L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+
Sbjct: 4   SPNTEHAESYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMIYEVVDNAIDEALAGH 63

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+L+ V+L+ +G  TV DNGRGIP + H +    S  E+I+T LHAGGKFD ++Y++SGG
Sbjct: 64  ADLVTVTLNADGSCTVSDNGRGIPTDIHRE-EGVSAAEVIMTQLHAGGKFDQNSYKVSGG 122

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS  L + + R       +F  G  ++PLE      ++RGT +TF P  
Sbjct: 123 LHGVGVSVVNALSTSLKLRIWRGGKEHRMEFRHGDAVAPLEVVGPAGDRRGTEVTFLPST 182

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           + F     FD A L K  +  A+L+  V+   +  +    K      EE  + GG++ ++
Sbjct: 183 ETFT-MTEFDYATLEKRLRELAFLNSGVRIVLTDARHAEHKR-----EELCYEGGVEAFV 236

Query: 274 QTKLENRSLIS--SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +    +R  +   ++  T   E+ G     VE A  W +     +  + N I   +GGTH
Sbjct: 237 RYLDRSRKPVDGMAKPVTVLGERDGI---RVEVAFWWNDSFNETVLPFTNNIPQRDGGTH 293

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  YAE +    K  +S+  DD       ++SV + +P+F+ QTK KLV
Sbjct: 294 MAGFRAALTRQLTGYAESSGIAKKEKVSLTGDDCREGLTAVISVQVPDPKFSSQTKDKLV 353

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATK-LLEWVIERSEERLRRRKQREVNRKTAIRKL 447
           S + +  VEN L +    +L +NP +A   + + V+  +     R+ +  + RK A+   
Sbjct: 354 SSEVRPAVENILNEGLSTWLEENPAQAKSVMGKVVLAAAAREAARKARETITRKGALDIA 413

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +      EL +VEGDSAGGSAKQ R+R+ QAVLPLRGKILNV    ++++
Sbjct: 414 SLPGKLADCQERDPSKCELLLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERVRADRM 473

Query: 508 RNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
            ++ +I  L+ ALG         R  +  + LRY ++IIMTDADVDG+HI +LLLTFF++
Sbjct: 474 LSSAEIGTLITALGAGIGRSSTDREGFNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFFR 533

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +M ++IE+ HL++  PPL++  +G +++Y  DE   +  L +    G
Sbjct: 534 QMPEIIERGHLYIAQPPLYKAERGRRALYLKDERALEDYLIDQGVEG 580



 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 7/96 (7%)

Query: 593 DEEHKQK---ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDL 649
           DE        + E     G+  +++ R+KGLGEM A QL ET +D + R+LL+V++    
Sbjct: 723 DETEFYGPVGLFEAVMAFGRKGLQLQRYKGLGEMTAQQLWETTLDRDVRSLLQVKV---- 778

Query: 650 NSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
               D  D   KLMG   + R +FIQE A  + ++ 
Sbjct: 779 KDTTDADDLFVKLMGDVVEPRREFIQENALSVANLD 814


>gi|237802614|ref|YP_002887808.1| DNA gyrase subunit B [Chlamydia trachomatis B/Jali20/OT]
 gi|231273848|emb|CAX10638.1| DNA gyrase subunit B [Chlamydia trachomatis B/Jali20/OT]
          Length = 804

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 224/580 (38%), Positives = 332/580 (57%), Gaps = 18/580 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +    YDAS+I +LEGL+ VR RPGMYIG T    LHHL  EV+DN++DE +AG+   + 
Sbjct: 3   AQEKKYDASAITVLEGLQAVRERPGMYIGDTGVTGLHHLVYEVVDNSIDEAMAGFCTEVV 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFP-----NKSTLEIILTTLHAGGKFDNSTYEISGG 153
           V +  +G +++ DNGRGIP++ H K         S LE++LT LHAGGKFD  +Y++SGG
Sbjct: 63  VRILEDGGISISDNGRGIPIQIHEKESAKQGREISALEVVLTVLHAGGKFDKDSYKVSGG 122

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+S VNALS++    V +    +S +FSRG PL+ L+      +KRGT + F PDP
Sbjct: 123 LHGVGVSCVNALSEKFIAKVFKDGQAYSMEFSRGAPLTTLQVLGPT-DKRGTEVLFYPDP 181

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF     FD A L+K  +  A+L+  V   +  D++        +K  F++ GG+++++
Sbjct: 182 AIFSTCV-FDRAILMKRLRELAFLNRGVTIVFEDDRD-----TGFDKVVFFYEGGIQSFV 235

Query: 274 QTKLENRSLISSEIFTGKTEK-KGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHE 331
               +N+ ++       +  + +       E A+ W     E I SY N I T +GGTH 
Sbjct: 236 SYLNQNKEILFPNPIYMQGSRPRDDGDIEFEAALQWNSGYSELIYSYANNIPTRQGGTHL 295

Query: 332 SGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G   ALTR +  Y +     ++    +  +D+    V I+SV +  P+F GQTK KL +
Sbjct: 296 TGFSTALTRAVNSYIKAHNLSKSDKLSLTGEDIKEGLVAIVSVKVPNPQFEGQTKQKLGN 355

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN-RKTAIRKLR 448
            D     +    +    +  +NP  A  +++ V   ++ R   ++ RE+  RK+A+   R
Sbjct: 356 SDVGSVSQQISGEVLTTFFEENPQIAKTIVDKVFVAAQAREAAKRARELTLRKSALDSAR 415

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKL DC +      E++IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  +K+ 
Sbjct: 416 LPGKLIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKVF 475

Query: 509 NNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
            NQ+I  ++ ALGC           LRY+++IIMTDADVDG+HI +LLLTFFY+ M  LI
Sbjct: 476 QNQEIGSIIAALGCGIGKDNFNLSKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHMSALI 535

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607
           E + +++  PPL+R+++     Y   E+     L      
Sbjct: 536 ENECVYIAQPPLYRVSKKKDFRYILSEKEMDGYLLNLGTK 575



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 9/97 (9%)

Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
            +     +++++  K  G+  IEI R+KGLGEM A QL +T M+  +RTL+RV +   + 
Sbjct: 714 CYT---LKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAV- 769

Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFI--DDVG 685
              +       LMG +   R +FI+  A  I  +++ 
Sbjct: 770 ---EADHIFTMLMGEEVPPRREFIESHALSIRMNNLD 803


>gi|81251094|gb|ABB69892.1| DNA gyrase subunit B [Nitrosovibrio sp. RY3C]
          Length = 559

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 221/559 (39%), Positives = 339/559 (60%), Gaps = 19/559 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGY 93
             N + S++Y + SI+IL+GL+ VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+
Sbjct: 13  GNNPANSNDYGSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEALAGH 72

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFP-NKSTLEIILTTLHAGGKFDNSTYEISG 152
            + I V++  +  ++V+DNGRGIP          +S  EI++T LHAGGKFD+++Y++SG
Sbjct: 73  CDEITVTIHPDNSVSVLDNGRGIPTGIKQDDELKRSAAEIVMTELHAGGKFDDNSYKVSG 132

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS+ L +T+ R       +F  G P++PL    K   +RGT + F   
Sbjct: 133 GLHGVGVSVVNALSEWLRLTIRRGGLTHQIEFRMGAPVAPLAILGKT-ERRGTEVHFLAS 191

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            +IFGD   +      +  +  ++L+  VK      +         ++E F F GG+K++
Sbjct: 192 KQIFGDI-EYHYDIFARRLRELSFLNNGVKIHLVDQR-------TGKEETFAFAGGVKSF 243

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++     ++++   IF  + EK+G     VE ++ W +    ++  + N I   +GGTH 
Sbjct: 244 VEYINRAKTVLHPNIFYARGEKEGI---VVEVSMQWNDSYAEQVLCFTNNIPQKDGGTHL 300

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +GLR A+TR +  Y E  +   K  I    DD+      +LSV + EP+F+ QTK KLVS
Sbjct: 301 TGLRAAMTRTLNSYIEKNELSKKAKIETSGDDMREGLSCVLSVKLFEPKFSSQTKEKLVS 360

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLR 448
            + +  VE  +      +L + P++A  +   +I+ +  R   RK RE+ R+   +  L 
Sbjct: 361 SEVRPAVEEIVTQKLSDFLQERPLDAKTICGKIIDAARAREAARKARELTRRKGVLDGLG 420

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADC +      EL++VEG SAGGSAKQ R+R  QA++PL+GKILNV  A  +K+ 
Sbjct: 421 LPGKLADCQEKDPALCELYLVEGGSAGGSAKQGRDRKFQAIMPLKGKILNVEKARFDKLI 480

Query: 509 NNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
           ++Q+I+ L+ ALG    + +Y  + LRY ++IIMTDADVDG+HI +LLLTFFY++M +LI
Sbjct: 481 SSQEIISLITALGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELI 540

Query: 568 EQKHLFLISPPLFRITQGT 586
           E+ H+++  PPL+++  G 
Sbjct: 541 ERGHIYIAQPPLYKVKHGK 559


>gi|303326105|ref|ZP_07356548.1| DNA gyrase, B subunit [Desulfovibrio sp. 3_1_syn3]
 gi|302864021|gb|EFL86952.1| DNA gyrase, B subunit [Desulfovibrio sp. 3_1_syn3]
          Length = 801

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 226/572 (39%), Positives = 325/572 (56%), Gaps = 19/572 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
              S +  Y+ASSI ILEGL  VR RP MYIG TD + LHHL  EV+DN++DE +AGY +
Sbjct: 3   PETSGNGGYNASSITILEGLSAVRKRPAMYIGSTDGRGLHHLVYEVVDNSIDEAMAGYCS 62

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V L  +  +TV D+GRGIPV+ HPK      +++++T LHAGGKFDN++Y++SGGLH
Sbjct: 63  RITVILHADNSVTVRDDGRGIPVDIHPK-EGVPAVQVVMTKLHAGGKFDNTSYKVSGGLH 121

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+S VNALS+EL VTV R    + Q ++RG+P   L    +     GT + FRPD +I
Sbjct: 122 GVGVSCVNALSEELTVTVRRDGKRYRQHYARGVPQDQLAVIGEDVEGHGTTVRFRPDEEI 181

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     F    L K  +  AYL+  +      ++       I E   F+  GG++ ++  
Sbjct: 182 FEV-LEFSYETLKKRFEELAYLNKGLIIECIDER-------IGETHVFHAEGGIRQFVAD 233

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
                  I S    G+         TV++A+ +       I ++ N I T EGGTH  G 
Sbjct: 234 LNSGEQGIHSI-IFGEGMVDSV---TVDFALQYNAGYKENILTFANNIRTKEGGTHLVGF 289

Query: 335 RVALTRGIKKYAELT----QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           R ALTR I  Y +      +  +  ++  DD+      ++SV + +P+F GQTKTKL + 
Sbjct: 290 RTALTRAINGYIKGQQDLVKKLKNTALSGDDVREGLTAVISVKLPQPQFEGQTKTKLGNS 349

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           +    V   + D  + Y  +NP +   ++E  ++ +  R   R+ +E V RK A+    L
Sbjct: 350 EVAGLVAGVVYDRLNVYFEENPKDIRLIIEKAVDAARARDAARRAKELVRRKGALSDNAL 409

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC       +ELFIVEGDSAGGSAKQ RN  NQA+LPLRGKILN      +++  
Sbjct: 410 PGKLADCQSKDPVESELFIVEGDSAGGSAKQGRNPKNQAILPLRGKILNTERTRFDRMLA 469

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N+++  L+ A+G   +     E LRY K+IIMTDADVDGAHI +LLLTFF+++  +++E+
Sbjct: 470 NKEVKALITAMGAGIQDDTDLEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQYQEMVEK 529

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
             +++  PPL+R+       +  D+      L
Sbjct: 530 GFVYIAQPPLYRVHNSRMEKFIKDDAELNDFL 561



 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           ++++      +  I I R+KGLGEM   QL  T M+ + R LL+V +           D+
Sbjct: 718 QLMQMVLDEARRGINIQRYKGLGEMNPDQLWVTTMNPDNRILLQVSVEDAT----SASDA 773

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             +LMG + + R  FI+  A  + ++ 
Sbjct: 774 FEELMGDRVEPRRDFIERNALAVQELD 800


>gi|312112799|ref|YP_004010395.1| DNA gyrase subunit beta [Rhodomicrobium vannielii ATCC 17100]
 gi|311217928|gb|ADP69296.1| DNA gyrase, B subunit [Rhodomicrobium vannielii ATCC 17100]
          Length = 811

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 240/573 (41%), Positives = 341/573 (59%), Gaps = 16/573 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE + GYA+ + V+
Sbjct: 12  EAYGAESIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALGGYADYVSVT 71

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L+ +G +TV DNGRGIP E H +    S  E+I+T LHAGGKFD ++Y++SGGLHGVG+S
Sbjct: 72  LNADGSVTVEDNGRGIPTEIHSQ-EGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVS 130

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  L +T+ R        F+ G+P+ PL+      + RGTR+TF P P  F    
Sbjct: 131 VVNALSTRLELTIWRSGHEHFMAFADGVPVEPLKIVGPAPDLRGTRVTFTPSPATFT-MV 189

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD A L    +  A+L+  V    +  +        P K EF + GGLK +++     R
Sbjct: 190 DFDYATLEFRLRELAFLNSGVYIRLNDLR-----GVEPVKSEFKYEGGLKAFVEYLDRAR 244

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
           + +       + +++G     VE A+ W +   E    + N I   +GGTH +G R ALT
Sbjct: 245 TPLFPVPVFVRADREGV---AVEAALWWNDGYHENVLCFTNNIPQRDGGTHLAGFRAALT 301

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA  T    +  + +  DD       +LSV + +P+F+ QTK KLVS + +  VE
Sbjct: 302 RTINTYAAATGVAKREKVQLTGDDAREGLTCVLSVKVADPKFSSQTKDKLVSSEVRPAVE 361

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADC 456
           + + D    +  ++P+E   +L  V E +  R   RK RE+ R+   +    LPGKLADC
Sbjct: 362 SIMTDILGTWFEEHPVEGKLILLKVAEAAAAREAARKARELTRRKGVLDVANLPGKLADC 421

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            +     +E+F+VEGDSAGGSAKQ R+RSNQAVLPLRGKILNV  A  +K+ ++Q+I  L
Sbjct: 422 QERDPAKSEVFLVEGDSAGGSAKQGRDRSNQAVLPLRGKILNVERARFDKMLSSQEIGTL 481

Query: 517 VQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           + ALG    R  +    LRY ++IIMTDADVDGAHI +LLLTFFY++M  LIE  H+++ 
Sbjct: 482 ITALGTGIGRDDFDIAKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPQLIESGHIYIA 541

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
            PPL+++ +G+   Y  D+   +  L +    G
Sbjct: 542 QPPLYKVKRGSSENYLKDQRAFEDFLIDGGLEG 574



 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 4/88 (4%)

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           + +L      G+  + + R+KGLGEM   QL+ET +D N RTLL+V++ +    L D  +
Sbjct: 727 RDLLNAVFAAGRAGVTMQRYKGLGEMNPEQLRETTLDPNVRTLLQVKLGE----LADADE 782

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
              KLMG   + R  FIQ+ A  + ++ 
Sbjct: 783 IFAKLMGDVVEPRRDFIQQNALSVSNLD 810


>gi|301335659|ref|ZP_07223903.1| DNA gyrase subunit B [Chlamydia trachomatis L2tet1]
          Length = 804

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 223/580 (38%), Positives = 331/580 (57%), Gaps = 18/580 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +    YDAS+I +LEGL+ VR RPGMYIG T    LHHL  EV+DN++DE +AG+   + 
Sbjct: 3   AQEKKYDASAITVLEGLQAVRERPGMYIGDTGVTGLHHLVYEVVDNSIDEAMAGFCTEVV 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFP-----NKSTLEIILTTLHAGGKFDNSTYEISGG 153
           V +  +G +++ DNGRGIP++ H K         S LE++LT LHAGGKFD  +Y++SGG
Sbjct: 63  VRILEDGGISISDNGRGIPIQIHEKESAKQGREISALEVVLTVLHAGGKFDKDSYKVSGG 122

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+S VNALS++    V +    +S +FSRG PL+ L+      +KRGT + F PDP
Sbjct: 123 LHGVGVSCVNALSEKFIAKVFKDGQAYSMEFSRGAPLTTLQVLGPT-DKRGTEVLFYPDP 181

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF     FD A L+K  +  A+L+      +  D++        +K  F++ GG+++++
Sbjct: 182 AIFSTCV-FDRAILMKRLRELAFLNRGATIVFEDDRD-----TGFDKVVFFYEGGIQSFV 235

Query: 274 QTKLENRSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHE 331
               +N+ ++       +  + G       E A+ W     E I SY N I T +GGTH 
Sbjct: 236 SYLNQNKEILFPNPIYIQGSRPGDDGDIEFEAALQWNSGYSELIYSYANNIPTRQGGTHL 295

Query: 332 SGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G   ALTR +  Y +     ++    +  +D+    V I+SV +  P+F GQTK KL +
Sbjct: 296 TGFSTALTRAVNSYIKAHNLSKSDKLSLTGEDIKEGLVAIVSVKVPNPQFEGQTKQKLGN 355

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN-RKTAIRKLR 448
            D     +    +    +  +NP  A  +++ V   ++ R   ++ RE+  RK+A+   R
Sbjct: 356 SDVGSVSQQISGEVLTTFFEENPQIAKTIVDKVFVAAQAREAAKRARELTFRKSALDSAR 415

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKL DC +      E++IVEG+SAGGSAKQ R+R  QA+LP+RGKILNV  A  +K+ 
Sbjct: 416 LPGKLIDCLEKDPEKCEMYIVEGNSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKVF 475

Query: 509 NNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
            NQ+I  ++ ALGC           LRY+++IIMTDADVDG+HI +LLLTFFY+ M  LI
Sbjct: 476 QNQEIGSIIAALGCGIGKDNFNLSKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHMSALI 535

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607
           E + +++  PPL+R+++     Y   E+     L      
Sbjct: 536 ENECVYIAQPPLYRVSKKKDFRYILSEKEMDGYLLNLGTK 575



 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 9/97 (9%)

Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
            +     +++++  K  G+  IEI R+KGLGEM A QL +T M+  +RTL+RV +   + 
Sbjct: 714 CYT---LKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAV- 769

Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFI--DDVG 685
              +       LMG +   R +FI+  A  I  +++ 
Sbjct: 770 ---EADHIFTMLMGEEVPPRREFIKSHALSIRMNNLD 803


>gi|56798248|dbj|BAD82891.1| GyrB [Burkholderia multivorans]
          Length = 824

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 237/596 (39%), Positives = 342/596 (57%), Gaps = 37/596 (6%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94
            +Q  + +Y ASSI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +AGY 
Sbjct: 6   NSQPDNSSYGASSIQILEGLETVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYC 65

Query: 95  NLIEVSLDGNGFLTVVDNGRGI-PV----ENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
           N I V++  +  ++VVDNGRGI P     + H   P +S  EI++T LHAGGKFD ++Y+
Sbjct: 66  NDIHVTIHADNSISVVDNGRGIRPTCMMNDKHE--PKRSAAEIVMTELHAGGKFDQNSYK 123

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKE 197
           +SGGLHGVG+S VNALS  L +TV R       +F RG+             +SP++   
Sbjct: 124 VSGGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQDRVIEVVDGEEVSPMQVIG 183

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
              N RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E    
Sbjct: 184 DTEN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD-- 239

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
                F F GG+K +++   + +S +   IF    EK G     VE A+ W +     + 
Sbjct: 240 -----FAFAGGVKGFVEYINKTKSNLHPTIFHVIGEKDGV---GVEVAMQWNDSYNENVL 291

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
            + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV +
Sbjct: 292 CFTNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETTGDDMREGLSCVLSVKV 351

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP+F+ QTK KLVS + +  VE  +    + +L++ P +A  +   ++E +  R   RK
Sbjct: 352 PEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARK 411

Query: 435 QREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            RE+ R+   +  + LPGKLADC +     +E++IVEGDSAGGSAKQ R+R  QA+LPLR
Sbjct: 412 AREMTRRKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLR 471

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIA 552
           GK+LNV  A  +K+ +++QI+ LV ALGC         + LRY ++IIMTDADVDGAHI 
Sbjct: 472 GKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIR 531

Query: 553 SLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +LLLTFFY++M ++IE+ ++++  PPL+++  G    Y  D+      +      G
Sbjct: 532 TLLLTFFYRQMPEMIERGYVYIAQPPLYKVKAGKDERYLKDDAELNAHMLRLALQG 587



 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             +  ++      +  +   R+KGLGEM   QL ET MD N R LLRV+I   +      
Sbjct: 738 DFKNAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMDPNVRRLLRVQIEDAI----AA 793

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
                 LMG + + R  FI+  A    ++ 
Sbjct: 794 DGIFTTLMGDEVEPRRAFIESNALRAGNID 823


>gi|188474269|gb|ACD49734.1| DNA gyrase subunit B [Vibrio alginolyticus]
          Length = 778

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 220/551 (39%), Positives = 334/551 (60%), Gaps = 17/551 (3%)

Query: 56  EPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGR 114
           + VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I V++  +  ++V D+GR
Sbjct: 1   DAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIVVTIHEDNSVSVSDDGR 60

Query: 115 GIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA 174
           GIP E H +  N S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ 
Sbjct: 61  GIPTEIHSE-ENVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIH 119

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   I +Q +  G P +PL       +K GT+I F P  + F +   F    L K  +  
Sbjct: 120 RGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQIRFWPSAETFSNT-EFHYDILAKRLREL 177

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      ++E        + + F + GG++ ++     N++ I  +IF   +E+
Sbjct: 178 SFLNSGVSIKLVDEREAD------KHDHFMYEGGIQAFVDHLNTNKTPIIEKIFHFNSER 231

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
           +     +VE A+ W +     I  + N I   +GGTH +G R ALTR +  + +      
Sbjct: 232 ED--GISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSK 289

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +L++N
Sbjct: 290 KAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIEN 349

Query: 412 PIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P EA  +   +I+ +  R   RK R    RK A+    LPGKLADC +     +EL+IVE
Sbjct: 350 PTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVE 409

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYR 529
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y 
Sbjct: 410 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYN 469

Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV 589
            + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++  PPL+++ +G +  
Sbjct: 470 PDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPPLYKVKKGKQEQ 529

Query: 590 YAHDEEHKQKI 600
           Y  DEE   + 
Sbjct: 530 YIKDEEAMNQY 540



 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 7/92 (7%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G ++       +  + L+   K     +   R+KGLGEM   QL ET MD   R ++
Sbjct: 692 IKRGERT---MPVANFAEALDWLVKESMRGLSRQRYKGLGEMNPDQLWETTMDPETRRMM 748

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKF 673
           +V I   +            LMG + + R  F
Sbjct: 749 QVTIEDAVG----ADQLFTTLMGDQVEPRRNF 776


>gi|209542192|ref|YP_002274421.1| DNA gyrase subunit B [Gluconacetobacter diazotrophicus PAl 5]
 gi|209529869|gb|ACI49806.1| DNA gyrase, B subunit [Gluconacetobacter diazotrophicus PAl 5]
          Length = 818

 Score =  490 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 226/587 (38%), Positives = 342/587 (58%), Gaps = 18/587 (3%)

Query: 25  KSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVID 83
              ++P+S A        +YDA+SI +L+GL+ VR RPGMYIG TD+   LHH+  E+ID
Sbjct: 2   PDADMPNSDATGTLPDDSDYDAASISVLKGLDAVRKRPGMYIGDTDDGSGLHHMAFEIID 61

Query: 84  NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143
           NA+DE  AG+A    V+L+G+G +TV DNGRGIP + H +    S  E++LT LHAGGKF
Sbjct: 62  NAVDEAQAGFATSCIVTLNGDGSVTVRDNGRGIPTDMHAE-EGVSAAEVVLTKLHAGGKF 120

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           + ++Y++SGGLHGVG +VVNALS+ + V + R       +F  G   +PL         R
Sbjct: 121 NQNSYKVSGGLHGVGAAVVNALSEWMEVRIWRNGQEHMIRFRHGERDAPLTVVGPSDEPR 180

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT++TF+P    F     F+ A L +  +  A+L+  ++     ++     +    +E F
Sbjct: 181 GTQVTFKPSIGTFTRV-EFEFAILERRMRELAFLNSGLQIVLRDER-----HTPTREENF 234

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           +F GGL  +++     +S I     TG  + +      VE+A+ W +     +  + N I
Sbjct: 235 HFQGGLAAFVEWLDRGKSSIVDPPITGSLQNEDN-GIKVEFALTWNDSFHETMLCFTNNI 293

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII-SDDLMISAVGILSVFIREPEFAG 381
              +GG+H +G R ALTR + KYAE   +K+    +  +D+      +LSV + +P+F+ 
Sbjct: 294 PQRDGGSHLAGFRQALTRVVGKYAESNASKKDSQSLVGEDMREGMTAVLSVKVPDPKFSS 353

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK KLVS + Q  V  A  D   H+   +P EA  ++  V++ +  R   R+ RE+ R+
Sbjct: 354 QTKDKLVSSEVQPVVHAAASDMIAHWFETHPKEARAIVAKVMDAAAAREAARRARELTRR 413

Query: 442 TA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
              +    LPGKLADC +     +ELFIVEGDSAGG+AKQ R+R  QA+LPL+GKILNV 
Sbjct: 414 KGVLDVSSLPGKLADCQERDPARSELFIVEGDSAGGTAKQGRDRRFQAILPLKGKILNVE 473

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASL 554
            A  +++  + ++  L+ ALG         +  +  + LRY +V+IMTDADVDG+HI +L
Sbjct: 474 RARFDRMLGSAEVGTLITALGTGIGRGDVDQGGFSIDKLRYHRVVIMTDADVDGSHIRTL 533

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           LLTFF+++M +LIE+ HL++  PPL+R  +G    Y  D+   ++ L
Sbjct: 534 LLTFFFRQMPELIERGHLYIAQPPLYRAKRGNDERYLKDDAALEQYL 580



 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 4/84 (4%)

Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
           E     G+  + I+RFKGLGEM  +QL ET +D   RTLL+V++    N+ +      + 
Sbjct: 738 ERILAQGRRGLSINRFKGLGEMNDAQLWETTLDPAMRTLLQVKVGDVENAAQ----VFST 793

Query: 662 LMGTKADERFKFIQERASFIDDVG 685
           LMG   + R  FI   A  + ++ 
Sbjct: 794 LMGDVVEPRRDFIVGNALKVANLD 817


>gi|162147558|ref|YP_001602019.1| putative DNA gyrase subunit B [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161786135|emb|CAP55717.1| putative DNA gyrase subunit B [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 818

 Score =  490 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 226/587 (38%), Positives = 342/587 (58%), Gaps = 18/587 (3%)

Query: 25  KSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVID 83
              ++P+S A        +YDA+SI +L+GL+ VR RPGMYIG TD+   LHH+  E+ID
Sbjct: 2   PDADMPNSDATGTLPDDSDYDAASISVLKGLDAVRKRPGMYIGDTDDGSGLHHMAFEIID 61

Query: 84  NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143
           NA+DE  AG+A    V+L+G+G +TV DNGRGIP + H +    S  E++LT LHAGGKF
Sbjct: 62  NAVDEAQAGFATSCIVTLNGDGSVTVRDNGRGIPTDMHAE-EGVSAAEVVLTKLHAGGKF 120

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           + ++Y++SGGLHGVG +VVNALS+ + V + R       +F  G   +PL         R
Sbjct: 121 NQNSYKVSGGLHGVGAAVVNALSEWMEVRIWRNGQEHMIRFRHGERDAPLTVVGPSDEPR 180

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT++TF+P    F     F+ A L +  +  A+L+  ++     ++     +    +E F
Sbjct: 181 GTQVTFKPSIGTFTRV-EFEFAILERRMRELAFLNSGLQIVLRDER-----HTPTREENF 234

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           +F GGL  +++     +S I     TG  + +      VE+A+ W +     +  + N I
Sbjct: 235 HFQGGLAAFVEWLDRGKSSIVDPPITGSLQNEDN-GIKVEFALTWNDSFHETMLCFTNNI 293

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII-SDDLMISAVGILSVFIREPEFAG 381
              +GG+H +G R ALTR + KYAE   +K+    +  +D+      +LSV + +P+F+ 
Sbjct: 294 PQRDGGSHLAGFRQALTRVVGKYAESNASKKDSQSLVGEDMREGMTAVLSVKVPDPKFSS 353

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK KLVS + Q  V  A  D   H+   +P EA  ++  V++ +  R   R+ RE+ R+
Sbjct: 354 QTKDKLVSSEVQPVVHAAASDMIAHWFETHPKEARAIVAKVMDAAAAREAARRARELTRR 413

Query: 442 TA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
              +    LPGKLADC +     +ELFIVEGDSAGG+AKQ R+R  QA+LPL+GKILNV 
Sbjct: 414 KGVLDVSSLPGKLADCQERDPARSELFIVEGDSAGGTAKQGRDRRFQAILPLKGKILNVE 473

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASL 554
            A  +++  + ++  L+ ALG         +  +  + LRY +V+IMTDADVDG+HI +L
Sbjct: 474 RARFDRMLGSAEVGTLITALGTGIGRGDVDQGGFSIDKLRYHRVVIMTDADVDGSHIRTL 533

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           LLTFF+++M +LIE+ HL++  PPL+R  +G    Y  D+   ++ L
Sbjct: 534 LLTFFFRQMPELIERGHLYIAQPPLYRAKRGNDERYLKDDAALEQYL 580



 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 4/84 (4%)

Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
           E     G+  + I+RFKGLGEM  +QL ET +D   RTLL+V++    N+ +      + 
Sbjct: 738 ERILAQGRRGLSINRFKGLGEMNDAQLWETTLDPAMRTLLQVKVGDVENAAQ----VFST 793

Query: 662 LMGTKADERFKFIQERASFIDDVG 685
           LMG   + R  FI   A  + ++ 
Sbjct: 794 LMGDVVEPRRDFIVGNALKVANLD 817


>gi|149194734|ref|ZP_01871829.1| DNA gyrase subunit B [Caminibacter mediatlanticus TB-2]
 gi|149135157|gb|EDM23638.1| DNA gyrase subunit B [Caminibacter mediatlanticus TB-2]
          Length = 758

 Score =  490 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 237/590 (40%), Positives = 345/590 (58%), Gaps = 26/590 (4%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y A +I++L+GLE VR RPGMYIG T EK LHHL  EV+DNA+DE +AGYA  I+V ++ 
Sbjct: 4   YGAENIKVLKGLEAVRKRPGMYIGDTSEKGLHHLIYEVVDNAIDEAMAGYATEIKVKINK 63

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G +T+ DNGRGIPV+ HP+        ++LT LHAGGKFDN TY++SGGLHGVG+SVVN
Sbjct: 64  DGSVTISDNGRGIPVDIHPE-EKIPAATVVLTVLHAGGKFDNKTYKVSGGLHGVGVSVVN 122

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS +L +T+ R   I+ Q+F RG P++ LE      N+ GT I F PD +IF     F 
Sbjct: 123 ALSKKLIMTIKRDGKIYKQEFERGKPITDLEVIGNT-NRTGTTIQFWPDEEIFDS-VEFK 180

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L K  +  AYL+  +   +  ++   +       E ++F GG+K +++  L N+ LI
Sbjct: 181 PQILQKRLKELAYLNPNITIYFEDERHNIK-------EVYHFEGGIKDFVK-TLTNKELI 232

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
           +  I+  K          VE A+ +      ++ S+ N I T +GGTHESG +  L++ I
Sbjct: 233 TDVIYYNKQYSDEEKSLDVEVALCYDSGYDEKVLSFVNNIRTPDGGTHESGFKAGLSKAI 292

Query: 343 KKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
             Y       K  I + +DD+      I+SV + EP+F GQTK KL S   +  V+    
Sbjct: 293 INYINKNMKLKDNIKVTADDVKEGLNAIVSVKMSEPQFEGQTKGKLGSSYVKPIVQKVTY 352

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL-PGKLADCSQNI 460
           +    +  +NP  A  + E  I  +  R+  +K RE+ RK A   +   PGKLADC    
Sbjct: 353 EYLTRFFEENPNTAKIIAEKAIAAARSRIAAKKARELTRKQAKIGVGTLPGKLADCQTKN 412

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
               EL++VEGDSAGGSAKQ R+R  QA+LPLRGKILN   +   K  ++++I +++ AL
Sbjct: 413 PDEAELYLVEGDSAGGSAKQGRDRYFQAILPLRGKILNTQKSTDAKALSSEEIKNIITAL 472

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           G    S +  + +RY+K+IIMTDADVDG+HI +L++TFF+  + +LIE+ +L++  PPL+
Sbjct: 473 GTGIGSDFDADKVRYKKIIIMTDADVDGSHIQTLIMTFFFNHLRELIERGYLYIAQPPLY 532

Query: 581 RITQGTKSVYAHDEEHKQKILEE-----FKKHGKGKIEIS-------RFK 618
           R  +G    Y  D++   + L E      +  G GK+E+         +K
Sbjct: 533 RYKKGKIEKYLKDDKELNEFLIEQGINSIEIEGVGKLELKELLKNAAYYK 582



 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 8/112 (7%)

Query: 578 PLF----RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           PLF    ++ +  K      +    ++L+E  K  +    I R+KGLGEM   QL +T M
Sbjct: 650 PLFIEAKKVYEKLKEYKDLVKGDYLELLDEVIKKARSGAHIQRYKGLGEMNPDQLWDTTM 709

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D   R L++V +    N+ K         MG++   R ++IQ  A  ++++ 
Sbjct: 710 DPENRVLIQVTLEDAENAAKQ----FELFMGSEVGPRREYIQANAKEVENID 757


>gi|242281240|ref|YP_002993369.1| DNA gyrase, B subunit [Desulfovibrio salexigens DSM 2638]
 gi|242124134|gb|ACS81830.1| DNA gyrase, B subunit [Desulfovibrio salexigens DSM 2638]
          Length = 798

 Score =  490 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 238/583 (40%), Positives = 335/583 (57%), Gaps = 22/583 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + + +Y A SI +LEGL  VR RP MYIG TD + LHHL  EV+DN++DE + GY +  +
Sbjct: 2   APNQDYSAESITVLEGLAAVRKRPAMYIGSTDIRGLHHLVYEVVDNSIDEAMGGYCDKFK 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+L  +  +TV DNGRGIPV+ HPK   K  LEI++T LHAGGKFDN  Y++SGGLHGVG
Sbjct: 62  VTLHMDNSVTVSDNGRGIPVDIHPK-KKKPALEIVMTVLHAGGKFDNDAYKVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +S VNALS+ L  TV R   I+ Q + RG+P  PLE         GT I FRPD +IF  
Sbjct: 121 VSCVNALSEHLEATVRRGGKIYRQSYERGVPTGPLECIGDA-VTTGTTIRFRPDEEIFET 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              FD   L K  +  AYL+  ++  +  ++         E   F   GG+ ++++   +
Sbjct: 180 -NQFDFNTLKKRFRELAYLNKGLEIEFVDERSN-------ESASFKADGGIVSFVEDLNK 231

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
            ++ +S  I+             V++  A+ E      ++ N I T EGGTH +G + AL
Sbjct: 232 GQTTVSEIIYAESETDNVITELAVQYNTAFKE---NTHTFANNIRTVEGGTHLAGFKGAL 288

Query: 339 TRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR I  Y + +   +   I +  DD+      ++SV + +P+F GQTKTKL + +    V
Sbjct: 289 TRAINTYIQNSDLPKKLKIKLSGDDVREGLTAVISVKLPDPQFEGQTKTKLGNSEMVGIV 348

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
              + D    Y  +NP +A  ++E V++ +  R   RK R+ V RK A+    LPGKLAD
Sbjct: 349 SGMVYDKLSSYFQENPKDAKAIVEKVVDAARARDAARKARDLVRRKGALSDHSLPGKLAD 408

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C       +ELFIVEGDSAGGSAKQ RN  +QA+LPLRGKILNV     +K+  N++I  
Sbjct: 409 CQSKDPAESELFIVEGDSAGGSAKQGRNPKHQAILPLRGKILNVEKTRFDKMLGNKEIRA 468

Query: 516 LVQALGCRTRSQY---REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           L+ A+G     +      + LRY KV+IMTDADVDG+HI +LLLTFF+++  +LIE+ HL
Sbjct: 469 LITAMGIGIGQEEGEKDFDKLRYHKVVIMTDADVDGSHIRTLLLTFFFRQYEELIERGHL 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615
           ++  PPL+RI +G    +  D+     +L E        I I 
Sbjct: 529 YIAQPPLYRIAKGKYEKFIKDDSELYSLLIERVAKD---ITIK 568



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 13/109 (11%)

Query: 580 FRITQGTKSVYAHDEEHKQKI---LEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           F+IT+G       +E   + I   L+   +     I + R+KGLGEM   QL ET MD  
Sbjct: 699 FKITRGE------NETEVRGIFSLLDGVMEEAYKGINLQRYKGLGEMNPEQLWETTMDPE 752

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           KRT+L+V I           D    LMG   + R +FI++ A  + ++ 
Sbjct: 753 KRTMLQVTIEDAT----AANDIFEDLMGDNVEPRREFIEKNALAVQELD 797


>gi|117928634|ref|YP_873185.1| DNA topoisomerase IV subunit B [Acidothermus cellulolyticus 11B]
 gi|117649097|gb|ABK53199.1| DNA topoisomerase IV subunit B [Acidothermus cellulolyticus 11B]
          Length = 703

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 234/693 (33%), Positives = 327/693 (47%), Gaps = 55/693 (7%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92
            A    + +D Y A  + +LEGLE VR RPGMYIG TD + L H   E++DNA+DE +AG
Sbjct: 17  TAQPYAAETDAYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCVWELLDNAVDEALAG 76

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           Y + I+V +  +G + V D GRGIPV+  PK    + +E++ T LHAGGKF    Y  SG
Sbjct: 77  YGDAIDVIVYADGSVEVRDTGRGIPVDVEPK-TGLTGVEVVFTKLHAGGKFGGGAYGTSG 135

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG--------IPLSPLEKKEK------ 198
           GLHGVG SVVNAL+  L V V R    ++  F RG         P +P            
Sbjct: 136 GLHGVGASVVNALAARLDVEVDRDGATWTMSFRRGRRGIFDGPGPKAPFRPGGGLAKARR 195

Query: 199 -VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
             R   GTR+ F PDP+IF   A  D   L+   +  A+L   +      +         
Sbjct: 196 LPRKVTGTRVRFWPDPQIFLRDARIDLDALIARARQTAFLVPGLAITIRDE-------TT 248

Query: 258 PEKEEFYFPGGLKTYLQTKLEN--------------------RSLISSEIFTGKTEKKGT 297
              E F F GG K +                            ++   +       +   
Sbjct: 249 AYAETFRFSGGTKDFADYLAAEAGAQTSVSGTLQLRGTGQFTETVPVLDDRGHSVPQDVI 308

Query: 298 HRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
               V+ A+ W       I S+ N + T +GG+H +G   A+ + +   A   +  +   
Sbjct: 309 REMVVDVALRWDSGYDTVIRSFVNVVATPKGGSHVTGFERAVVKVVSDAARSARLVKDEP 368

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           I+ DD++     ++SV   EP+F GQTK  L +  A R V + +      +         
Sbjct: 369 IVKDDVLEGLTAVVSVRFPEPQFDGQTKEVLGTPAATRIVFDVVSRGLRAFFSSTRRVDR 428

Query: 417 KLLEWVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           +    V+E+        R  R  +    RK A+    LP KLADC    A  TELFIVEG
Sbjct: 429 QASRAVLEKVVAAARTRRALRAHKEAQRRKNALESAALPAKLADCRSTDASRTELFIVEG 488

Query: 472 DSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE 531
           DSA G+AK ARN   QA+LP+RGKILNV  A    + NN +   ++Q +G  +   +  +
Sbjct: 489 DSALGTAKLARNSEFQALLPIRGKILNVQKADLSDMLNNAECAAIIQVIGAGSGRSFSLD 548

Query: 532 DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG--TKSV 589
            +RY KVIIMTDADVDGAHI  LLLT F++ M  L++   +F   PPL RI        V
Sbjct: 549 AVRYGKVIIMTDADVDGAHIRCLLLTLFFRYMRPLLDAGRIFAAVPPLHRIEVSGRKDPV 608

Query: 590 YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDL 649
           Y + +    ++L +  + G       R+KGLGEM A+QL ET MD   R L R+ +    
Sbjct: 609 YTYSDAELHRLLADLDRQGIRYKTPQRYKGLGEMDAAQLAETTMDPAHRVLRRMTLTDAA 668

Query: 650 NSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            +          LMG     R +FI   A+ +D
Sbjct: 669 AAEAA----FELLMGGDVVPRKEFIAASAATLD 697


>gi|121607007|ref|YP_994814.1| DNA gyrase subunit B [Verminephrobacter eiseniae EF01-2]
 gi|121551647|gb|ABM55796.1| DNA gyrase subunit B [Verminephrobacter eiseniae EF01-2]
          Length = 868

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 230/631 (36%), Positives = 334/631 (52%), Gaps = 43/631 (6%)

Query: 12  LPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-D 70
                          G            AS++YDA +I ILEGLE VR RPGMYIG T D
Sbjct: 2   TADNPLPEPAPGGTGGPALPKIDTRQAGASESYDAGAITILEGLEAVRKRPGMYIGDTSD 61

Query: 71  EKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNK 127
              LHHL  EV+DN++DE +AG+ + I V++  +  ++V DNGRGIP          P +
Sbjct: 62  GTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHTDNSISVTDNGRGIPTGVKFDDKHEPRR 121

Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187
           S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV R+  +   +F+RG
Sbjct: 122 SAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKWLRLTVRREGRVHQLEFARG 181

Query: 188 ------------IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
                       + +SP++        RGT + F PD +IF +   F    L K  +  +
Sbjct: 182 FVQDRLLDTVDGVAVSPMKLAGATEK-RGTEVHFLPDAEIFKENRDFHYEILAKRLRELS 240

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V+     ++   E         F   GG++ +++   + ++ +    F    E+ 
Sbjct: 241 FLNNGVRIRLKDERSGKEDD-------FSGAGGVRGFVEFINKGKTALHPNSFYATGERP 293

Query: 296 GTHRGT-------VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY-- 345
               G        VE A+ W      ++  + N I   +GGTH +GLR A+TR I KY  
Sbjct: 294 AETYGGIPGTHIGVEVAMQWNSAYAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIE 353

Query: 346 AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                 K  + +  DD+      +LSV + EP+F+ QTK KLVS + +  VE+ +     
Sbjct: 354 ETEMAKKAKVEVTGDDMREGLCCVLSVKLPEPKFSSQTKDKLVSSEVRAPVEDIVGKLLA 413

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGT 464
            YL + P +A  +   +++ +  R   RK R    RK A+  L LPGKLADC +      
Sbjct: 414 DYLQEKPADAKIICSKIVDAARAREAARKAREMTRRKGALDGLGLPGKLADCQEKDPALC 473

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  EK+  +  I+ L+ ALG   
Sbjct: 474 EIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARYEKLLTSDAILTLITALGTGI 533

Query: 525 R--------SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
                      +    LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ H+++  
Sbjct: 534 GKAGGSAGGDDFDAAKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGHIYIAQ 593

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607
           PPL+++  G + +Y  D+      L     +
Sbjct: 594 PPLYKVKAGKEELYLKDDPALDNFLLRIALN 624



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             ++ ++      +      R+KGLGEM   QL ET MD + R LLRV+I+  +    + 
Sbjct: 782 DFRQAMKWLISEAERTTTRQRYKGLGEMNPEQLWETTMDPSVRRLLRVQIDDAI----EA 837

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
                 LMG + + R  FI+  A    ++ 
Sbjct: 838 DRVFTMLMGDEVEPRRDFIEMNALRAGNID 867


>gi|167626458|ref|YP_001676958.1| DNA topoisomerase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|167596459|gb|ABZ86457.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 803

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 229/576 (39%), Positives = 346/576 (60%), Gaps = 19/576 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S +  YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ + I
Sbjct: 2   SENKAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGHCDDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +G ++V DNGRGIP + H K   +S  E+ILT LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  KVIINKDGSVSVSDNGRGIPTDIH-KEEGRSAAEVILTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS++L +T+ R      Q++  G+P  PL++     +K+GT ITF+P    F 
Sbjct: 121 GVSVVNALSEQLKLTIYRNGIEHYQEYVHGVPQFPLKEVG-TTDKKGTVITFKPSKDTFS 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               FD   L+K  +  ++L+  VK                  E F + GG+  +++   
Sbjct: 180 -FVDFDYDILMKRIRELSFLNSGVKIELID-------RINNRSEIFKYDGGIIAFVKYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            ++  I   +      K       VE A+ W +     I  + N I   +GGTH SGL+ 
Sbjct: 232 NSKKPIHENVIAVNGIKDDIQ---VELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKA 288

Query: 337 ALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           A+TR +  Y E      K  +++  +D       +LSV + +P+F+ QTK KLVS D + 
Sbjct: 289 AVTRTMNTYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKS 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKL 453
            VE+ + +    +L++NP EA  + E +++ ++ R   RK      RK A+    LPGKL
Sbjct: 349 AVESLVNEKLQEFLLENPKEAKIVCEKILDSAKAREAARKARDMTRRKGALDIAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +E+++VEGDSAGGSAKQAR+R  QA+LPL+GKILNV  A  +K+  +Q++
Sbjct: 409 ADCQEKDPSLSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEV 468

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L++ALGC      Y  +  RY K+I+MTDADVDG+HI +LLLTFFY++M +L+E+ +L
Sbjct: 469 ATLIKALGCGIGAEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYL 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++  PPL+++ +G +  Y  DE+     L      G
Sbjct: 529 YIAQPPLYKVKKGKQETYLKDEDALAVYLGNIGLEG 564



 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K  Y    +  +  ++   K  +   ++ R+KGLGEM   QL ET MD + R LL
Sbjct: 706 VERGAKKEYV---DDFESAIDWLLKEARRGNDVQRYKGLGEMNPGQLWETTMDPDNRVLL 762

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +    +       LMG + + R  FI+  A  + ++ 
Sbjct: 763 QVSIKDAV----EADALFTTLMGDEVEPRRNFIESNALNVVNLD 802


>gi|157828742|ref|YP_001494984.1| DNA gyrase subunit B [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933470|ref|YP_001650259.1| DNA gyrase subunit B [Rickettsia rickettsii str. Iowa]
 gi|157801223|gb|ABV76476.1| DNA gyrase subunit B [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908557|gb|ABY72853.1| DNA gyrase subunit B [Rickettsia rickettsii str. Iowa]
          Length = 807

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 228/571 (39%), Positives = 331/571 (57%), Gaps = 14/571 (2%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYA 94
             +    +Y A SI++L+GLE V+ RPGMYIG   +   LHH+  EV+DNA+DE +AGY 
Sbjct: 5   EKKFNESSYGADSIKVLKGLEAVKKRPGMYIGDVGDGSGLHHMIYEVVDNAIDESLAGYC 64

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           +L+ V+L+ NG +TV DNGRGIPVE H +    S  E+I+T LHAGGKFD + Y+++GGL
Sbjct: 65  DLVRVTLNKNGSVTVSDNGRGIPVEIHEE-EGISAAEVIMTQLHAGGKFDQNAYKVAGGL 123

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS+ L + + R N  +  +F+ GI  +PL   ++  +K+GT +TF P  +
Sbjct: 124 HGVGVSVVNALSEWLELRIWRNNKEYLMRFNNGITEAPLAVVKENIDKKGTEVTFFPSVE 183

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
            F +   FD   +    +  A+L+  VK     ++    K        FY+ GG++ Y++
Sbjct: 184 TFTNI-EFDFGTIEHRLRELAFLNSGVKILLVDNRFEEVKEVE-----FYYTGGIEAYVK 237

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
                +  I          +      ++E A+ W +     I  + N I   +GGTH S 
Sbjct: 238 YIDRAKHAIHP--CIVVNTENAESGISLELAMHWNDSYHENILCFTNNIRQRDGGTHLSA 295

Query: 334 LRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            + A+TR I  Y + T   +        +D       +LSV + +P+F+ QTK KLVS +
Sbjct: 296 FKSAITRVITSYLDTTGLNKKAKNYFSGEDTREGLCCVLSVKVPDPKFSSQTKDKLVSSE 355

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VENA+      +  ++P EA  ++  ++E +  R   RK RE   RK+A+    LP
Sbjct: 356 VRPVVENAVYTKVLEWFEEHPAEAKAIIAKIMEAANAREAARKARELTRRKSALEVSNLP 415

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC       +ELFIVEGDSAGG+AKQ R+   QA+LPLRGKILNV  A  +K+  +
Sbjct: 416 GKLADCHAKDPAISELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGS 475

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
            QI  L+ ALG     ++  E LRY KVIIMTDADVDG+HI +LLLTFFY+ M  LI + 
Sbjct: 476 DQIGTLITALGISVEREFSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPALINKG 535

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +L++  PPL+++ +G    Y  +E+  Q  L
Sbjct: 536 YLYIAQPPLYKVKKGAAEFYLKNEQALQDYL 566



 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 56/136 (41%), Gaps = 21/136 (15%)

Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK 609
            I+ L LT F      L              ++   ++             L    + GK
Sbjct: 692 QISKLALTIFDIFSKQL--------------KLIVKSQEFDILTPSQL---LNTIIECGK 734

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669
             I I RFKGLGEM + QL ET +D  KRTLL+V +      + + +   + LMG   + 
Sbjct: 735 RGINIQRFKGLGEMNSDQLWETTLDPTKRTLLQVRV----AEIDEAEGIFSTLMGDVVEP 790

Query: 670 RFKFIQERASFIDDVG 685
           R  FIQ  A  + ++ 
Sbjct: 791 RRLFIQANALNVVNLD 806


>gi|34581483|ref|ZP_00142963.1| DNA gyrase subunit B [Rickettsia sibirica 246]
 gi|28262868|gb|EAA26372.1| DNA gyrase subunit B [Rickettsia sibirica 246]
          Length = 807

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 228/566 (40%), Positives = 331/566 (58%), Gaps = 14/566 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
             +Y A SI++L+GLE V+ RPGMYIG   +   LHH+  EV+DNA+DE +AGY +L+ V
Sbjct: 10  ESSYGADSIKVLKGLEAVKKRPGMYIGDVGDGSGLHHMIYEVVDNAIDESLAGYCDLVRV 69

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L+ NG +TV DNGRGIPVE H +    S  E+I+T LHAGGKFD + Y+++GGLHGVG+
Sbjct: 70  TLNKNGSVTVSDNGRGIPVEIHGE-EGISAAEVIMTQLHAGGKFDQNAYKVAGGLHGVGV 128

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+ L + + R N  +  +F+ GI  +PL   ++  +K+GT +TF P  + F + 
Sbjct: 129 SVVNALSEWLELRIWRNNKEYLMRFNNGITEAPLAVVKENIDKKGTEVTFFPSVETFTNI 188

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             FD   +    +  A+L+  VK     ++    K        FY+ GG++ Y++     
Sbjct: 189 -EFDFGTIEHRLRELAFLNSGVKILLVDNRFEEVKEVE-----FYYTGGIEAYVKYIDRA 242

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  I          +      ++E A+ W +     I  + N I   +GGTH S  + A+
Sbjct: 243 KHAIHP--CIVVNTENAESGISLELAMHWNDSYHENILCFTNNIRQRDGGTHLSAFKSAI 300

Query: 339 TRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR I  Y + T   +        +D       +LSV + +P+F+ QTK KLVS + +  V
Sbjct: 301 TRVITSYLDTTGLNKKAKNYFSGEDTREGLCCVLSVKVPDPKFSSQTKDKLVSSEVRPVV 360

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
           ENA+      +  ++P EA  ++  ++E +  R   RK RE   RK+A+    LPGKLAD
Sbjct: 361 ENAVYTKVLEWFEEHPAEAKSIIAKIMEAANAREAARKARELTRRKSALEVSNLPGKLAD 420

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C       +ELFIVEGDSAGG+AKQ R+   QA+LPLRGKILNV  A  +K+  + QI  
Sbjct: 421 CHAKDPAISELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGSDQIGT 480

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           L+ ALG     ++  E LRY KVIIMTDADVDG+HI +LLLTFFY+ M +LI + +L++ 
Sbjct: 481 LITALGISVEREFSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPELINKGYLYIA 540

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKIL 601
            PPL+++ +G    Y  +E+  Q  L
Sbjct: 541 QPPLYKVKKGAAEFYLKNEQALQDYL 566



 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 64/167 (38%), Gaps = 22/167 (13%)

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGA-HIASLLLTFFYQEMYDLIEQKHLFLISPP 578
              +         L+  K+++    +      I+ L LT F      L            
Sbjct: 661 HENKIECFCFSRGLKESKILLKEQLESFEFVQISKLALTIFDIFSKQL------------ 708

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
             ++   ++             L    + GK  I I RFKGLGEM + QL ET +D  KR
Sbjct: 709 --KLIVKSQEFDILTPSQL---LNTIIECGKRGINIQRFKGLGEMNSDQLWETTLDPTKR 763

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           TLL+V +      + + +   + LMG   + R  FIQ  A  + ++ 
Sbjct: 764 TLLQVRV----AEIDEAEGIFSTLMGDVVEPRRLFIQANALNVVNLD 806


>gi|319957711|ref|YP_004168974.1| DNA gyrase subunit b [Nitratifractor salsuginis DSM 16511]
 gi|319420115|gb|ADV47225.1| DNA gyrase subunit B [Nitratifractor salsuginis DSM 16511]
          Length = 771

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 239/565 (42%), Positives = 340/565 (60%), Gaps = 18/565 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y A +I++L+GLE VR RPGMYIG T  K LHHL  EV+DN++DE +AGY + I+V+L 
Sbjct: 3   EYGAGNIKVLKGLEAVRKRPGMYIGDTSVKGLHHLIYEVVDNSIDEAMAGYCDKIKVTLT 62

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
           G G   + DNGRGIPV  HP         ++LT LHAGGKFD  TY++SGGLHGVG+SVV
Sbjct: 63  GEGSAIIEDNGRGIPVAEHP-TEKIPAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVSVV 121

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS++LH+TV R+  ++ Q F +GIP++PLE   K R   GT+I F PD  IF +   F
Sbjct: 122 NALSEKLHLTVFREGQVYEQWFEKGIPVTPLEVTGKTRK-TGTKIEFWPDHTIFTETVEF 180

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  AYL+ R+   +  ++          KE ++F GG++ +++       L
Sbjct: 181 KDEILTKRFKELAYLNSRITIDFKDER-------NGLKESYHFEGGIRQFVEDMHTKELL 233

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
            S ++F GK +        ++ A  +   + +   S+ N I T +GGTHE+G R  LTR 
Sbjct: 234 SSPQLFEGKADD-----IEMDLAFMYQNADSDKVISFVNNIKTADGGTHEAGFRAGLTRA 288

Query: 342 IKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  Y     N +  +     DD     V ++SV + EP+F GQTK KL S   +  V+  
Sbjct: 289 ISNYISKNANAKERNTKISGDDTKEGLVAVVSVRVPEPQFEGQTKGKLGSSYVRPLVQKF 348

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
             +    YL +NPIEA  ++  V+  ++ R   ++ ++ V RK ++    LPGKLADC  
Sbjct: 349 TYERISKYLEENPIEAKAIMNHVLLAAKGREAAKRAKDLVKRKDSMSVGTLPGKLADCQS 408

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  EKI  + +I +++ 
Sbjct: 409 KDPGISELYLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKARLEKILKSDEIKNMIT 468

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALGC    ++ EE LRY K+IIMTDADVDG+HI +LL+TFF++ +  +IE+ +L+L  PP
Sbjct: 469 ALGCGIGDEFNEEKLRYHKIIIMTDADVDGSHIQTLLMTFFFRFLRPVIEKGYLYLAQPP 528

Query: 579 LFRITQGTKSVYAHDEEHKQKILEE 603
           L+R  +G    Y  D++     L E
Sbjct: 529 LYRYKKGKNETYLKDDKALNDFLIE 553



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 15/111 (13%)

Query: 586 TKSVYAHD-----------EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
            +++Y +D           ++   ++L++     +    I R+KGLGEM   QL ET MD
Sbjct: 664 NEALYIYDKIRERLTDEFRDKDLLELLDKILASARKGAYIQRYKGLGEMNPEQLWETTMD 723

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              R LL++ I       ++   +    MG + + R  +I+  A  +  + 
Sbjct: 724 PENRRLLQITIED----FEEADKTFMLFMGDEVEPRRNYIETHAKDVKHLD 770


>gi|241668890|ref|ZP_04756468.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254877422|ref|ZP_05250132.1| DNA gyrase subunit B gyrB [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843443|gb|EET21857.1| DNA gyrase subunit B gyrB [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 803

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 229/576 (39%), Positives = 346/576 (60%), Gaps = 19/576 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S +  YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ + I
Sbjct: 2   SENKAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGHCDDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +G ++V DNGRGIP + H K   +S  E+ILT LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  KVIINKDGSVSVSDNGRGIPTDIH-KEEGRSAAEVILTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS++L +T+ R      Q++  G+P  PL++     +K+GT ITF+P    F 
Sbjct: 121 GVSVVNALSEQLKLTIYRNGIEHYQEYVHGVPQFPLKEVG-TTDKKGTVITFKPSKDTFS 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               FD   L+K  +  ++L+  VK                  E F + GG+  +++   
Sbjct: 180 -FVDFDYDILMKRIRELSFLNSGVKIELID-------RINNRSEIFKYDGGIIAFVKYLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            ++  I   +      K       VE A+ W +     I  + N I   +GGTH SGL+ 
Sbjct: 232 NSKKPIHENVIAVNGIKDDIQ---VELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKA 288

Query: 337 ALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           A+TR +  Y E      K  +++  +D       +LSV + +P+F+ QTK KLVS D + 
Sbjct: 289 AVTRTMNTYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKS 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKL 453
            VE+ + +    +L++NP EA  + E +++ ++ R   RK      RK A+    LPGKL
Sbjct: 349 AVESLVNEKLQEFLLENPKEAKIVCEKILDSAKAREAARKARDMTRRKGALDIAGLPGKL 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +E+++VEGDSAGGSAKQAR+R  QA+LPL+GKILNV  A  +K+  +Q++
Sbjct: 409 ADCQEKDPSLSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEV 468

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L++ALGC      Y  +  RY K+I+MTDADVDG+HI +LLLTFFY++M +L+E+ +L
Sbjct: 469 ATLIKALGCGIGAEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYL 528

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++  PPL+++ +G +  Y  DE+     L      G
Sbjct: 529 YIAQPPLYKVKKGKQETYLKDEDALAVYLGNIGLEG 564



 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K  Y    +  +  ++   K  +   ++ R+KGLGEM   QL ET MD + R LL
Sbjct: 706 VERGAKKEYI---DDFESAIDWLLKEARRGNDVQRYKGLGEMNPGQLWETTMDPDNRVLL 762

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +    +       LMG + + R  FI+  A  + ++ 
Sbjct: 763 QVSIKDAV----EADALFTTLMGDEVEPRRNFIESNALNVVNLD 802


>gi|94502310|ref|ZP_01308787.1| DNA gyrase B subunit [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|94451137|gb|EAT14085.1| DNA gyrase B subunit [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
          Length = 602

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 236/609 (38%), Positives = 349/609 (57%), Gaps = 23/609 (3%)

Query: 87  DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146
           DE ++G+ + I V++  +  +TV+DNGRGIPVE H K    S LE+++T + AGGKFDN+
Sbjct: 1   DESLSGFCDKIYVTIHKDNSITVLDNGRGIPVELHEK-EGISALELVMTKIGAGGKFDNN 59

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y+ SGGLHGVGIS VNALS +L   + R   I+ QK+SRG+P+S LE     +N+RGT+
Sbjct: 60  SYKFSGGLHGVGISCVNALSSKLIAKIFRNGKIYVQKYSRGVPISKLEIIGDSKNQRGTQ 119

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           ITF+ D  IF     ++ + L    +  ++L+  +      +++   K G  +K  F+  
Sbjct: 120 ITFKADKFIFKKI-SYNYSILKNRLRELSFLNKGLSISLLDERK-IYKTGFFKKNHFFSK 177

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTE-------KKGTHRGTVEWAIAWCEEN-PEITSY 318
            G+K +L    +N+  I     + K+        KK      +E  + +      +I SY
Sbjct: 178 KGIKEFLMFIEKNKESIIENYKSKKSRIKDFFYLKKNKKNINLELVMRYNSSYKEKIFSY 237

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPE 378
            N I T EGGTH SGL+ ALT+  KKY    +  + + I     +     IL++ I  P+
Sbjct: 238 VNNINTSEGGTHISGLKKALTKTFKKYFSKNRRFKKLKISGGYFIEGLTAILTIKIINPK 297

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
           F GQTK KLV+ +    VE  ++  F+ +L +NP+   K+L  V   ++ R   ++ RE+
Sbjct: 298 FEGQTKNKLVNYEIIGLVEKIVKKKFNSFLEKNPLYLKKILNKVFLSAKARQAYKRVREL 357

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            +    +K  LP KLADCS    +  EL++VEGDSAGG+AKQ R R  QAVLPLRGKILN
Sbjct: 358 IKTKTSKKNNLPIKLADCSSKNPNLCELYLVEGDSAGGTAKQGRERKFQAVLPLRGKILN 417

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR-----YEKVIIMTDADVDGAHIAS 553
           V  +   KI  N++I ++  ALG     +     L      Y+K+IIMTDAD+DG+HI++
Sbjct: 418 VEKSIKNKIFENEEIKNIFLALGVFFFKKKNIIKLNIKKIRYKKIIIMTDADIDGSHIST 477

Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613
           L+LTFF++ M  LIE+ ++++ +PPLF I    K +YA + + ++KIL   KK     I 
Sbjct: 478 LVLTFFFRYMRILIEKGYIYIATPPLFLIKNYKKKIYAWNYKEREKIL---KKSLLKGIS 534

Query: 614 ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKF 673
           I R+KGLGEM A QL ET M+   RTL +V I    +++K      + LMG     R +F
Sbjct: 535 IQRYKGLGEMNAEQLWETTMNPINRTLRKVTI----HNIKIANKIFSMLMGENVLPRKQF 590

Query: 674 IQERASFID 682
           I+  A F  
Sbjct: 591 IETNALFAK 599


>gi|283852478|ref|ZP_06369746.1| DNA gyrase, B subunit [Desulfovibrio sp. FW1012B]
 gi|283572086|gb|EFC20078.1| DNA gyrase, B subunit [Desulfovibrio sp. FW1012B]
          Length = 806

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 234/581 (40%), Positives = 338/581 (58%), Gaps = 27/581 (4%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           +   ++A   YDASSI +LEGL  VR RP MYIG TD + LHHL  EV+DN++DE +AGY
Sbjct: 2   SEEKKTAPQAYDASSITVLEGLSAVRKRPAMYIGSTDIRGLHHLVYEVVDNSIDEAMAGY 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
            + I V++  +G +TV DNGRGIPV+ HPK  ++  +E+++T LHAGGKFDN TY++SGG
Sbjct: 62  CDRINVAVHLDGSVTVSDNGRGIPVDMHPK-EHRPAVEVVMTVLHAGGKFDNDTYKVSGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS+ L VTV R    + Q++ RG+P++ +    +  N  GT I F+PD 
Sbjct: 121 LHGVGVSVVNALSEYLEVTVRRNGKKYQQRYERGVPVTQVTVIGEAEN-TGTTIRFKPDE 179

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IF     F    L K  +  AYL+  ++  +  D+         E+  + F GG+K ++
Sbjct: 180 EIFET-NQFSHETLAKRFEELAYLNRGLEIDFRDDR-------TSERVTYRFDGGIKRFV 231

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
                   +I   I  G  E  G     V++A+ +      E+ ++ N I T EGGTH +
Sbjct: 232 ADLNAGEPVIHDIIE-GLAEMDGV---VVDFALQYNANYKEEVYTFANNIRTREGGTHLA 287

Query: 333 GLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G + ALTRGI  Y E     +        DD+      ++SV +  P+F GQTKTKL + 
Sbjct: 288 GFKTALTRGINTYIEKADIPKKFKQKLTGDDVREGLTAVISVKLPNPQFEGQTKTKLGNS 347

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           +    V   + +  + +  +NP +A  ++E  ++ +  R   RK +E V RK A+    L
Sbjct: 348 EVVGIVSKIVFEAINVHFEENPKDAKAIVEKAVDAARAREAARKAKELVRRKGALSDHSL 407

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC       +EL+IVEGDSAGGSAKQ R+   QA+LPLRGKILNV    ++K+  
Sbjct: 408 PGKLADCQSKNPEESELYIVEGDSAGGSAKQGRDPRFQAILPLRGKILNVERTRTDKMLG 467

Query: 510 NQQIMDLVQALGCRTRS---------QYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           N++I +L+ A+G                    LRY K++IMTDADVDGAHI +LLLTFFY
Sbjct: 468 NKEIRNLITAMGPTPSMGDDESEEKDNENYARLRYHKIVIMTDADVDGAHIRTLLLTFFY 527

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +    LI+  ++++  PPL+R+ +G    +  D+E   + L
Sbjct: 528 RRYERLIQSGYIYIAQPPLYRVFKGDFERFIKDDEELSQFL 568



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 4/84 (4%)

Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
           +         + I R+KGLGEM   QL ET M+  KR+ L+V I        +  D  ++
Sbjct: 726 KALMDDALKGVNIQRYKGLGEMNPEQLWETTMNPEKRSFLQVSIEDAG----EANDIFSQ 781

Query: 662 LMGTKADERFKFIQERASFIDDVG 685
           LMG K + R  FI+  A  + ++ 
Sbjct: 782 LMGEKVEGRRDFIERNALSVRELD 805


>gi|258406590|ref|YP_003199332.1| DNA gyrase, B subunit [Desulfohalobium retbaense DSM 5692]
 gi|257798817|gb|ACV69754.1| DNA gyrase, B subunit [Desulfohalobium retbaense DSM 5692]
          Length = 794

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 241/596 (40%), Positives = 347/596 (58%), Gaps = 38/596 (6%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + Y A SI ILEGL  VR RP MYIG TD + LHHL  EV+DNA+DE +AGY N ++V++
Sbjct: 4   NQYTADSITILEGLSAVRKRPAMYIGSTDLQGLHHLVYEVVDNAIDEAMAGYCNRVKVTI 63

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  +T+ D+GRGIPV+ HPK  NK  +E+++T LHAGGKFDN TY++SGGLHGVG+SV
Sbjct: 64  HLDNSVTISDDGRGIPVDMHPKQ-NKPAVEVVMTVLHAGGKFDNETYKVSGGLHGVGVSV 122

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+ L VT+ R  T + Q++ RG+P S LE++    ++ GT I FRPD +IF D   
Sbjct: 123 VNALSEYLEVTIQRSGTKYHQRYERGLPKSELEERGPT-HRTGTTIRFRPDEEIFADLN- 180

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F AA L K  +  AYL+  ++  +  ++         E + F + GG++++++    +  
Sbjct: 181 FTAATLTKRFEELAYLNSGLEIAFFDER-------TQESQRFKYDGGIRSFIENLNADEG 233

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            + S    G  E +      +E+A+ +       + S+ N I T EGG+H SG + ALTR
Sbjct: 234 ALHSI-VYGHGEVENV---AIEFALQYNGGFKENVHSFANNIRTKEGGSHLSGFKTALTR 289

Query: 341 GIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  Y       +        DD+      ++SV +  P+F GQTKTKL + +    V +
Sbjct: 290 NINTYLLHADLPKKFKTKITGDDVREGLTAVVSVKLPMPQFEGQTKTKLGNSEVAGHVAS 349

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            +      YL +NP +A  ++E +++ +  R   RK ++ V RK+A+    LPGKLADC 
Sbjct: 350 VISSHLGTYLEENPKDAKAIVEKIVDAARARDAARKAKDLVRRKSALGDNALPGKLADCQ 409

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +ELFIVEGDSAGGSAKQ R+   QA+LPLRGKILNV     +K+  N++I  L+
Sbjct: 410 SKDPKESELFIVEGDSAGGSAKQGRDPKFQAILPLRGKILNVEKTRFDKMLENKEIKHLI 469

Query: 518 QALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
            A+G     +    E LRY KVIIMTDADVDGAHI +LLLTFF+++   LIE  +L++  
Sbjct: 470 TAMGAGIGEEEINLEKLRYHKVIIMTDADVDGAHIRTLLLTFFFRQYPQLIEHGYLYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           PPL+R+ +G    +   E   ++ L            + R        + +LK T 
Sbjct: 530 PPLYRVHKGNFERFLSTENELKQYL------------MQRI-------SDELKVTT 566



 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 4/86 (4%)

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
           +LE         I + R+KGLGEM   QL ET M+ + R LL+V+I        +     
Sbjct: 712 LLEHVLAEADKGINVQRYKGLGEMNPKQLWETTMEPDDRMLLQVDIED----AAEADSIF 767

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
           +KLMG K + R  FI+  A  +D++ 
Sbjct: 768 SKLMGDKVEPRRDFIERNALSVDELD 793


>gi|225848548|ref|YP_002728711.1| DNA gyrase subunit beta [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644043|gb|ACN99093.1| DNA gyrase, B subunit [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 809

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 234/582 (40%), Positives = 331/582 (56%), Gaps = 30/582 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y A +I+ + GL+ VR RP MYIG   E+ LHHL  E++DNA+DE +AGYA  I V + 
Sbjct: 10  EYSAEAIQAVTGLDHVRARPAMYIGDIGERGLHHLVWEILDNAVDEAMAGYAKNITVIIH 69

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G +TV D+GRGIPV+ HP+F     +E++ T L AGGKF    Y+ SGGLHGVG SVV
Sbjct: 70  QDGSVTVEDDGRGIPVDIHPEF-KIPAVEMVFTILGAGGKFSKKAYQYSGGLHGVGASVV 128

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L V V R   I+ Q++S G P+ PL+        RGT++TF+PD  IF      
Sbjct: 129 NALSSWLVVEVYRNGKIYRQEYSYGKPVYPLKVVGDTTK-RGTKVTFKPDDSIFET-TTI 186

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               + K  +  A+L+  V+     +++  +       EEFYF  G+  +++   + +  
Sbjct: 187 KFDIIQKRVRELAFLNPGVRFVVIDERKDIK-------EEFYFENGIVDFVRVLNQAKEP 239

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +  E+   K EK G     VE A  + +     I S+ N I T EGGTH SG R ALTR 
Sbjct: 240 LFDEVIYVKGEKDGVL---VEVAFQYTKSYNEVIESFVNNIKTVEGGTHVSGFRAALTRS 296

Query: 342 IKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + K     +  + +      DDL      ++SV + EP+F GQTKTKL + D +R VE+ 
Sbjct: 297 MNKTLSGMKLPKELKSGVSGDDLREGLTAVISVKVPEPQFEGQTKTKLGNQDVKRIVESV 356

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458
           + D    Y  +N   A K+ E  IE +  R   RK +E++R+ + +    LPGKLADCS+
Sbjct: 357 VGDYLLEYFEKNKDIALKIAEKAIEAAIAREAARKAKEISRRKSFLEDSSLPGKLADCSE 416

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
           +     ELFIVEG+SAGGSAKQ R+R  QA+LPL+GKILNV  A  +KI +N++I  +V 
Sbjct: 417 SDPQLCELFIVEGESAGGSAKQGRDRRTQAILPLKGKILNVEKARIDKILSNEEIRAIVN 476

Query: 519 ALGCRT-------------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           A+G                   +    LRY K+I+M DADVDG+HI +LLLT FY+    
Sbjct: 477 AIGTGIGLPIKSEDEEKKEDEGFDLSKLRYHKIILMADADVDGSHITTLLLTLFYRFFPQ 536

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607
           +IE  HL++  PPL+++ +G   +Y  D+E   KI+ +F   
Sbjct: 537 IIENGHLYIAQPPLYKLKKGRSEIYVKDDEELSKIVIDFATD 578



 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 4/91 (4%)

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
           E    + +   + G    E+ R+KGLGEM   QL ET M+   R LL+V I         
Sbjct: 722 EDLDDLYDVIFEAGMSGCEVQRYKGLGEMNPEQLWETTMNPKTRRLLQVTIED----AAL 777

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
             +  + LMG K + R +FI + A  + ++ 
Sbjct: 778 ADEVFSILMGEKVEPRREFIMKYAKEVRNLD 808


>gi|323143411|ref|ZP_08078096.1| DNA gyrase, B subunit [Succinatimonas hippei YIT 12066]
 gi|322416816|gb|EFY07465.1| DNA gyrase, B subunit [Succinatimonas hippei YIT 12066]
          Length = 807

 Score =  488 bits (1257), Expect = e-136,   Method: Composition-based stats.
 Identities = 222/564 (39%), Positives = 336/564 (59%), Gaps = 16/564 (2%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           SA +NY AS I++L GLE VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I
Sbjct: 2   SAENNYGASGIKVLHGLEAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGFCTDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           EV++  +G + V DNGRGIPV+ HP+  ++S  E+++T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  EVTICADGSVKVKDNGRGIPVDEHPE-EHRSAAEVVMTVLHAGGKFDSNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALSD+L +T+ RQ  ++ Q +  G       K+    +  GT + F P P IF 
Sbjct: 121 GVSVVNALSDKLVLTIWRQGHVWQQTYLNGGNPEAPLKQIGDSDATGTEVRFWPSPSIFS 180

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   FD   L K  +  ++L+  +K   + ++E        +   F+  GG++ +++   
Sbjct: 181 NTT-FDYNVLAKRLRELSFLNSGIKIILTDERE------AGKSHTFHHNGGIEEFVRYLN 233

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
             ++ ++++IF      +      VE ++ W +     +  + N +   +GGTH SG + 
Sbjct: 234 RGKNPLNNKIFHCTKMCEDH--IMVEISMQWTDAYNESVFCFTNNVPQKDGGTHLSGFKS 291

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           A+TR    + E      K  +S   DD       ++SV + +P+F+ QTK KLVS +A  
Sbjct: 292 AVTRIFNSFLESHGYSKKHKVSTSGDDAREGLTAVISVKMPDPKFSSQTKDKLVSSEAGN 351

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT-AIRKLRLPGKL 453
            V   + +    +L +NP EA  +   +IE +  R   RK R+++RK   +    LP KL
Sbjct: 352 AVSGCVSEKLKDFLEENPAEADNICMKIIESARVREAMRKARDLSRKNGKLDINSLPDKL 411

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           A C +      ELFIVEGDSAGGSAK  R+   QA+LPLRGKILNV  A  +++  +QQ+
Sbjct: 412 AACREKDPALCELFIVEGDSAGGSAKGGRDSKFQAILPLRGKILNVEKARFDRMIQSQQV 471

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ ALGC   + +Y  +  RY  VIIMTDADVDGAHI  LLLTFFY++M ++IE+ ++
Sbjct: 472 GTLITALGCGVGKDEYDPDKFRYHNVIIMTDADVDGAHIRILLLTFFYRQMPEIIERGYV 531

Query: 573 FLISPPLFRITQGTKSVYAHDEEH 596
           ++  PPL+R  +G + VY   ++ 
Sbjct: 532 YIAQPPLYRYQKGKQVVYVQSDKE 555



 Score =  113 bits (283), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 8/104 (7%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           +  G+K +   +     +  E   K G   ++I R+KGLGEM A QL +T M+ + RTLL
Sbjct: 711 VVSGSKQIPVKN---FHEAYEVLMKEGFSGVKIQRYKGLGEMSAEQLSDTTMNPDTRTLL 767

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +    +    + +LMG + + R  FI E A     + 
Sbjct: 768 KVSIEDAI----EADRLLTELMGEEVESRRVFISENADKAT-LD 806


>gi|67459339|ref|YP_246963.1| DNA gyrase subunit B [Rickettsia felis URRWXCal2]
 gi|75536235|sp|Q4UKX5|GYRB_RICFE RecName: Full=DNA gyrase subunit B
 gi|67004872|gb|AAY61798.1| DNA gyrase subunit B [Rickettsia felis URRWXCal2]
          Length = 808

 Score =  488 bits (1257), Expect = e-136,   Method: Composition-based stats.
 Identities = 230/567 (40%), Positives = 334/567 (58%), Gaps = 15/567 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
             +Y A SI++L+GLE VR RPGMYIG   +   LHH+  EV+DNA+DE +AGY +L+ V
Sbjct: 10  ESSYGADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNAIDESLAGYCDLVRV 69

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L+ NG +TV DNGRGIPVE H +    S  E+I+T LHAGGKFD ++Y++SGGLHGVG+
Sbjct: 70  TLNKNGSVTVSDNGRGIPVEIHQE-EGISAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGV 128

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+ L + + R N  +  +F+ GI  +PL    +  NK+GT +TF P  + F + 
Sbjct: 129 SVVNALSEWLELRIWRNNKEYLIRFNNGITEAPLAVVNEDINKKGTEVTFFPSVETFTNI 188

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             FD   +    +  A+L+  VK     ++     +   ++ EFY+ GG++ Y++     
Sbjct: 189 -EFDFGTIEHRLRELAFLNSGVKILLVDNR-----FEEAKEVEFYYTGGIEAYVKYIDRA 242

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  +          +      ++E A+ W +     I  + N I   +GGTH S  + A+
Sbjct: 243 KHAVHP--CIVVNTENTESGISLELAMHWNDSYHENILCFTNNIRQRDGGTHLSAFKSAI 300

Query: 339 TRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR I  Y + T    K       +D       +LSV + +P+F+ QTK KLVS + +  V
Sbjct: 301 TRVITSYLDTTGLNKKSKNDFSGEDTREGLCCVLSVKVPDPKFSSQTKDKLVSSEVRPVV 360

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
           ENA+      +  ++P E+  ++  ++E +  R   RK RE   RK+A+    LPGKLAD
Sbjct: 361 ENAVYTKVLEWFEEHPAESKAIIAKIMEAANAREAARKARELTRRKSALEVSNLPGKLAD 420

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C       +ELFIVEGDSAGG+AKQ R+   QA+LPLRGKILNV  A  +K+  + QI  
Sbjct: 421 CHAKDPAISELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGSDQIGT 480

Query: 516 LVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALG    ++    E LRY KVIIMTDADVDG+HI +LLLTFFY+ M +LI + +L++
Sbjct: 481 LITALGTGVDNREFSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPELINKGYLYI 540

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKIL 601
             PPL+++ +G    Y  +E+  Q  L
Sbjct: 541 AQPPLYKVKKGAAEFYLKNEQALQDYL 567



 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 57/136 (41%), Gaps = 21/136 (15%)

Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK 609
            I+ L LT F      L              ++   ++             L    + GK
Sbjct: 693 QISKLALTIFDIFDKQL--------------KLIVKSQEFGILTASQL---LNAIIECGK 735

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669
             I I RFKGLGEM ++QL ET +D  KRTLL+V +      + + +   + LMG   + 
Sbjct: 736 RGISIQRFKGLGEMNSNQLWETTLDPAKRTLLQVRV----AEVDEAEGIFSTLMGDVVEP 791

Query: 670 RFKFIQERASFIDDVG 685
           R  FIQ  A  + ++ 
Sbjct: 792 RRLFIQANALNVVNLD 807


>gi|81251055|gb|ABB69863.1| DNA gyrase subunit B [Nitrosospira sp. KAN8]
          Length = 555

 Score =  488 bits (1257), Expect = e-136,   Method: Composition-based stats.
 Identities = 227/561 (40%), Positives = 336/561 (59%), Gaps = 19/561 (3%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIA 91
                  +S +Y + SI+IL+GL+ VR RPGMYIG T D   LHH+  EV+DNA+DE +A
Sbjct: 7   SPQQKIKSSTDYGSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVLDNAIDEALA 66

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFP-NKSTLEIILTTLHAGGKFDNSTYEI 150
           GY + I V +  +  +TV DNGRGIP          +S  EI++T LHAGGKFD+ +Y++
Sbjct: 67  GYCDEISVIIHPDNSVTVQDNGRGIPTGIKQDDELKRSAAEIVMTELHAGGKFDSDSYKV 126

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS+ L +++ R   +   +F  G+P++PL    K   +RGT + F 
Sbjct: 127 SGGLHGVGVSVVNALSEWLRLSIRRDEKVHQIEFRMGVPVTPLAVTGKT-ERRGTEVHFL 185

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
              +IFGD   +      K  +  ++L+  VK      +   E       E F F GG+K
Sbjct: 186 ASKEIFGDI-EYHYDIFAKRLRELSFLNNGVKIHLVDQRNAKE-------ETFAFVGGVK 237

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
           ++++     +S++   IF    EK    R  VE ++ W +    ++  + N I   +GGT
Sbjct: 238 SFVEYVNRTKSVLHPNIFYAAGEKD---RIVVEVSMQWNDSYTEQVLCFTNNIPQKDGGT 294

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +GLR A+TR +  Y E +    K  I    DD+      +LSV + EP+F+ QTK KL
Sbjct: 295 HLTGLRAAMTRTLNNYIEKSDLAKKAKIETSGDDMREGLSCVLSVKLFEPKFSSQTKEKL 354

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRK 446
           VS + +  VE  +      +L+++P++A  +   +IE +  R   RK RE+ R+   +  
Sbjct: 355 VSSEVRPVVEEIVSLKLAEFLMEHPVDAKIICGKIIEAARAREAARKARELTRRKGVLDG 414

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
           + LPGKLADC +     +EL++VEGDSAGGSAKQ R+R  QA++PL+GKILNV  A  +K
Sbjct: 415 MGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKARFDK 474

Query: 507 IRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           + ++Q+I  L+ ALG    + +Y  + LRY ++IIMTDADVDG+HI +LLLTFFY++M +
Sbjct: 475 LISSQEIASLITALGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPE 534

Query: 566 LIEQKHLFLISPPLFRITQGT 586
           LIE+ H+F+  PPL++I  G 
Sbjct: 535 LIERGHIFIAQPPLYKIKHGK 555


>gi|121596427|ref|YP_988323.1| DNA gyrase subunit B [Acidovorax sp. JS42]
 gi|120608507|gb|ABM44247.1| DNA gyrase subunit B [Acidovorax sp. JS42]
          Length = 868

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 230/625 (36%), Positives = 340/625 (54%), Gaps = 46/625 (7%)

Query: 15  QSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKA 73
            ++ S    ++    P     A+ + SD Y   +I+ILEGLE VR RPGMYIG T D   
Sbjct: 2   TAEQSQPAPEQPISAPAEQPVASVAGSDGYGEGAIQILEGLEAVRKRPGMYIGDTSDGTG 61

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTL 130
           LHHL  EV+DN++DE +AG+ + I V++  +  ++VVDNGRGIP          P +S  
Sbjct: 62  LHHLVFEVVDNSIDEALAGHCDDIVVTIHTDNSISVVDNGRGIPTGVKMDDKHEPKRSAA 121

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP- 189
           EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS +L +TV R       +F++G+  
Sbjct: 122 EIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKKLRLTVRRDGQTHQLEFAQGVVQ 181

Query: 190 -----------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLS 238
                      +SP++        RGT + F PD +IF +   F    L K  +  ++L+
Sbjct: 182 NRLIEVVDGVEVSPMKVIGPTEK-RGTEVRFLPDTEIFKENNDFHYEILAKRLRELSFLN 240

Query: 239 GRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH 298
             V+     ++   E         F   GG+K +++     + ++    F     +    
Sbjct: 241 NGVRIRLIDERTGKEDD-------FSGAGGVKGFVEFINGTKKVLHPTPFHATGSRPAET 293

Query: 299 -------RGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
                     VE A+ W +    ++  + N I   +GGTH +GLR A+TR I KY E  +
Sbjct: 294 YGGIPGTEIGVEVAMQWNDGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIEQNE 353

Query: 351 --NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
              K  + +  DD+      +LSV + EP+F+ QTK KLVS + +  VE+ +      YL
Sbjct: 354 LAKKAKVEVSGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVAKALTDYL 413

Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELF 467
            + P +A  L   ++E +  R   RK RE+ R+   +  + LPGKLADC +      E++
Sbjct: 414 EEKPNDAKILCGKIVEAARAREAARKAREMTRRKGVLDGMGLPGKLADCQEKDPALCEIY 473

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT--- 524
           IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  EK+ ++ +I+ L+ ALG      
Sbjct: 474 IVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARYEKLLSSNEIVTLITALGTGIGKA 533

Query: 525 --------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
                      +    LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ H+++  
Sbjct: 534 AVESGKSGADDFDVAKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGHIYIAQ 593

Query: 577 PPLFRITQGTKSVYAHDEEHKQKIL 601
           PPL+++  G + +Y  D       L
Sbjct: 594 PPLYKVKNGKEELYLKDAAALDTFL 618



 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 16/125 (12%)

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEE--HKQKILEEFKKHGKGKIEISRFKGL 620
              LI++           ++T+G     A +E+    ++ +       +      R+KGL
Sbjct: 757 FRGLIQEG---------AKVTRGEGEK-AKEEKVGDFRQAMAWLISEAERTTSRQRYKGL 806

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GEM   QL ET MD   R LLRV+I+  +    +       LMG + + R  FI+  A  
Sbjct: 807 GEMNPEQLWETTMDPEVRRLLRVQIDDAI----EADRVFTMLMGDEVEPRRDFIETNALR 862

Query: 681 IDDVG 685
             ++ 
Sbjct: 863 AGNLD 867


>gi|329847542|ref|ZP_08262570.1| DNA gyrase, B subunit [Asticcacaulis biprosthecum C19]
 gi|328842605|gb|EGF92174.1| DNA gyrase, B subunit [Asticcacaulis biprosthecum C19]
          Length = 823

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 235/605 (38%), Positives = 347/605 (57%), Gaps = 31/605 (5%)

Query: 26  SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDN 84
           + +  D     + +    Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN
Sbjct: 2   TDDSEDINTGLDANGQSEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDN 61

Query: 85  AMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144
           A+DEV+AG+A  +EV L+ +G  TV D+GRGIPV+ H +    S  E+I+T LHAGGKFD
Sbjct: 62  AIDEVLAGHATRVEVILNVDGSCTVTDDGRGIPVDIH-EGEGVSAAEVIMTELHAGGKFD 120

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV----- 199
            ++Y++SGGLHGVG+SVVNALSD L + + RQ    S +F RG  + PLE   +      
Sbjct: 121 QNSYKVSGGLHGVGVSVVNALSDYLDLVIYRQGKKHSVRFERGATVKPLEVIGEAPKRDD 180

Query: 200 -RNKRGTRITFRPDP----------KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
            R+  GT +TF P                    FD   L    +  A+L+  V   ++  
Sbjct: 181 GRDYTGTEVTFFPSMAKKDAQGMTLDGTFSFIDFDRKTLEHRLRELAFLNSGVSIRFADL 240

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +E       P +   ++ GG+  +++   + ++ I       +  ++      V+ A+ W
Sbjct: 241 REA-----EPYETLLHYDGGIIEFVRHLDKAKTAIIKAPVAVRGHREKV---EVDLALQW 292

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
            +     +  + N I   +GGTH +  R ALTR +  Y E +    K  +++  +D    
Sbjct: 293 NDSYHETMLCFTNNIPQRDGGTHLAAFRGALTRVMTAYLESSGAAKKEKVTVTGEDAREG 352

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              +LSV + +P+F+ QTK KLVS + +  VE  + D    +  +NP+EA +++  +IE 
Sbjct: 353 LTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGLVYDKLTQWFEENPVEAKQIVNKIIEA 412

Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           +  R   RK R+   RK+A+    LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR
Sbjct: 413 ASAREAARKARDLTRRKSALDISSLPGKLADCQERDPARSELFIVEGDSAGGSAKQGRNR 472

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTD 543
            NQA+LPLRGK+LNV  A  +K+ +++QI  L+ ALG    R  +  E LRY K+IIMTD
Sbjct: 473 ENQAILPLRGKVLNVERARFDKMLSSEQIGTLIVALGAGIGRDDFNIEKLRYHKIIIMTD 532

Query: 544 ADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEE 603
           ADVDGAHI +LLLTFFY++M +L+++ +L++  PPL+++ +G  S Y  D+      L E
Sbjct: 533 ADVDGAHIRTLLLTFFYRQMPELLDKGYLYIAQPPLYKVAKGKSSRYLKDDAELDAYLIE 592

Query: 604 FKKHG 608
              H 
Sbjct: 593 EGNHD 597



 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            ++      G+  + I R+KGLGEM A QL ET +D   RTLL+V++N       +  + 
Sbjct: 741 DLVAAVLDAGRKGLSIQRYKGLGEMNAEQLWETTLDKEARTLLQVKVNH----ADEADEM 796

Query: 659 INKLMGTKADERFKFIQERASFID 682
            +KLMG   + R +FIQE A   +
Sbjct: 797 FSKLMGDLVEPRREFIQENALDAE 820


>gi|330806661|ref|YP_004351123.1| DNA gyrase subunit B [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327374769|gb|AEA66119.1| DNA gyrase subunit B [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 792

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 218/556 (39%), Positives = 332/556 (59%), Gaps = 19/556 (3%)

Query: 52  LEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVV 110
           L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I + +  +  +TV 
Sbjct: 2   LKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDISIIIHPDESITVR 61

Query: 111 DNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELH 170
           DNGRGIPV+ H K    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L 
Sbjct: 62  DNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEQLV 120

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           +TV R   I+ Q +  G+P +P+          GT+I F+   + F +   F    L K 
Sbjct: 121 LTVRRSGKIWEQTYIHGVPQAPMAIVGD-SESTGTQIHFKASSETFKNIH-FSWDILAKR 178

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  ++L+  V      ++   E       E F + GGL+ +++    N++ ++      
Sbjct: 179 IRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLNTNKTPVNQVFHFN 231

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
              + G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y E  
Sbjct: 232 VQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNNYIEQE 288

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               K  ++   DD       I+SV + +P+F+ QTK KLVS + +  VE  +   F  +
Sbjct: 289 GLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSDF 348

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
           L++NP EA  ++  +I+ +  R   RK R    RK A+    LPGKLADC +     +EL
Sbjct: 349 LLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSEL 408

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-R 525
           ++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R
Sbjct: 409 YLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGR 468

Query: 526 SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG 585
            +Y  + LRY  +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++++  PPL+++ +G
Sbjct: 469 EEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYKVKKG 528

Query: 586 TKSVYAHDEEHKQKIL 601
            +  Y  D++  ++ +
Sbjct: 529 KQEQYIKDDDAMEEYM 544



 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             ++ LE        +  I R+KGLGEM   QL ET MD   R +L+V I   +      
Sbjct: 706 EFKEALEWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPGSRRMLKVTIEDAIG----A 761

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
               N LMG   + R  FI+  A  + ++ 
Sbjct: 762 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 791


>gi|257091666|ref|YP_003165307.1| DNA gyrase subunit B [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
 gi|257044190|gb|ACV33378.1| DNA gyrase, B subunit [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
          Length = 822

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 229/595 (38%), Positives = 345/595 (57%), Gaps = 29/595 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGY 93
              ++    YD SSI+ LEGLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+
Sbjct: 1   MIEENEESAYDESSIQQLEGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEALAGH 60

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
            + I +++  +  ++V DNGRGIP          P +S  EI++  LHAGGKF+ ++Y++
Sbjct: 61  CDEIVITIHADNSISVTDNGRGIPTGIKFDDKHEPRRSAAEIVMCVLHAGGKFNQNSYKV 120

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK-----------V 199
           SGGLHGVG+S VNALS  L + + R+   +  +F+RG  +  L + +K            
Sbjct: 121 SGGLHGVGVSCVNALSRWLRLIIRREGKKYLLEFNRGTVVDRLLEVQKGVEVSPLRVVAA 180

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
             KRGT + F  D +IFG    F    + K  +  ++L+  VK   +  +         +
Sbjct: 181 TEKRGTELHFMADEEIFGQI-EFHYEIIAKRLRELSFLNNGVKIRLNDQR-------TGK 232

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK-KGTHRGTVEWAIAWCEEN-PEITS 317
           +E+F F GG++ +++     +S++   IF    +   G    +VE A+ W +    ++  
Sbjct: 233 EEDFAFLGGVRGFVEYINRTKSVLHPNIFYASGDSAGGNGVISVEVAMQWNDSYAEQVLC 292

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +GLR A+TR I +Y E  +   K  + I  DD+      +LSV + 
Sbjct: 293 FTNNIPQADGGTHMTGLRAAMTRVINRYIEENEIAKKAKVDITGDDMREGLACVLSVKMP 352

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           +P+FA QTK KLVS +A+  VE  +      YL + P++A  +   +IE +  R   RK 
Sbjct: 353 DPKFASQTKMKLVSSEARPAVEEVVAAKLSEYLQERPVDAKVITGKIIEAARARDAARKA 412

Query: 436 REVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE+ R+  +   + LPGKLADC +      EL++VEGDSAGGSAKQ R+R  QA+LPL+G
Sbjct: 413 REMTRRKGLLDGVGLPGKLADCQEKDPALCELYLVEGDSAGGSAKQGRDRKFQAILPLKG 472

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIAS 553
           KILNV  A  +K+ ++Q+I  L+ ALG    + +Y+ E LRY ++IIMTDADVDGAHI +
Sbjct: 473 KILNVEKARFDKLISSQEIATLITALGTGIGKDEYKPEKLRYHRLIIMTDADVDGAHIRT 532

Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           LLLTFFY++M +L+E  H+++  PPL+++  G    Y  D++  ++ L      G
Sbjct: 533 LLLTFFYRQMPELVESGHIYIAQPPLYKVKHGKTERYIKDDQALKQFLLTLALEG 587



 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 10/107 (9%)

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           + R  +              + ++      +  +   R+KGLGEM   QL ET MD   R
Sbjct: 725 VVRAEKKQAVSSF------AETMQWLLSEVERSVSKQRYKGLGEMNPEQLWETTMDPKVR 778

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            LL+V+I   +       +    LMG   + R  FI+  A    ++ 
Sbjct: 779 RLLKVQIEDAIG----ADEIFTTLMGELVEPRRNFIETNALAARNID 821


>gi|254420618|ref|ZP_05034342.1| DNA gyrase, B subunit [Brevundimonas sp. BAL3]
 gi|196186795|gb|EDX81771.1| DNA gyrase, B subunit [Brevundimonas sp. BAL3]
          Length = 808

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 225/574 (39%), Positives = 336/574 (58%), Gaps = 23/574 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+A+L++V L
Sbjct: 10  EYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHADLVQVIL 69

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G +TV DNGRGIP   H +    S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SV
Sbjct: 70  NADGSVTVTDNGRGIPTGIH-EGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSV 128

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-------RNKRGTRITFRPDPK 214
           VNALSD L + + R       +F RG  +  L             +   GT +TF P   
Sbjct: 129 VNALSDWLELKIYRDGKAHQMRFERGDTVKSLVITGDAPIREDTGKPLSGTEVTFYPSVT 188

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
            F     FD   L    +  A+L+  V    +  +        P +   ++ GG++ +++
Sbjct: 189 TFS-HIDFDLKTLEHRLRELAFLNSGVVIKLADQRSA-----EPTETILHYEGGVEAFVR 242

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              ++++ I  ++   + +K+G     ++ A+ W +     +  + N I   +GGTH S 
Sbjct: 243 HLDKSKAPILKDVIVIRGKKEGI---ELDLALWWNDSYHETMLCFTNNIPQRDGGTHLSA 299

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R +LTR +  Y E +    K  +S+  +D       +LSV + +P+F+ QTK KLVS +
Sbjct: 300 FRASLTRVMGGYIESSGAGKKEKVSVTGEDAREGLTCVLSVKVPDPKFSSQTKDKLVSSE 359

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE    +    +  ++P+EA +++  +IE +  R   RK R+   RK+A+    LP
Sbjct: 360 VRPAVEALCSEGLAQWFEEHPVEAKQVVAKIIEAASAREAARKARDLTRRKSALEISSLP 419

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +ELFIVEGDSAGGSAKQARNR NQAVLPLRGKILNV  A  +++ ++
Sbjct: 420 GKLADCQERDPAKSELFIVEGDSAGGSAKQARNRENQAVLPLRGKILNVERARFDRMLSS 479

Query: 511 QQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
             I  L+ ALG          + LRY K+I+M DADVDGAHI +LLLTFFY++M +LI +
Sbjct: 480 DLIGTLILALGTGIGRDDFNADKLRYHKIILMADADVDGAHIRTLLLTFFYRQMPELITR 539

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEE 603
            H+++  PPL+++++G +S Y  D+      L E
Sbjct: 540 GHVYIAQPPLYKVSKGKQSRYLKDQAEMDAYLIE 573



 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/83 (40%), Positives = 45/83 (54%), Gaps = 4/83 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L      GK  + I R+KGLGEM   QL ET +D+N RTLL+V +  +    +D  D 
Sbjct: 726 DLLNAVLDAGKKGLAIQRYKGLGEMNPEQLWETTLDSNARTLLQVSVEHE----EDANDL 781

Query: 659 INKLMGTKADERFKFIQERASFI 681
             KLMG   + R +FIQE A   
Sbjct: 782 FAKLMGDVVEPRREFIQENALDA 804


>gi|220903291|ref|YP_002478603.1| DNA gyrase, B subunit [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219867590|gb|ACL47925.1| DNA gyrase, B subunit [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 801

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 225/565 (39%), Positives = 324/565 (57%), Gaps = 20/565 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y ASSI ILEGL  VR RP MYIG TD + LHHL  EV+DN++DE +AG+   I V L  
Sbjct: 11  YTASSITILEGLSAVRKRPAMYIGSTDARGLHHLVYEVVDNSIDEAMAGFCTRITVILHA 70

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +  +TV D+GRGIPV+ HPK      +++++T LHAGGKFDN++Y++SGGLHGVG+S VN
Sbjct: 71  DNSVTVRDDGRGIPVDIHPK-EGVPAVQVVMTKLHAGGKFDNTSYKVSGGLHGVGVSCVN 129

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS++L VTV R    + Q++SRG+P   L    +  +  GT + F+PD +IF   + F 
Sbjct: 130 ALSEDLTVTVRRDGKRYRQRYSRGLPQDELTVIGEGVDGHGTTVRFKPDEEIFEV-SEFS 188

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L K  +  AYL+  +      ++       I E   F+  GG++ ++         I
Sbjct: 189 YDTLKKRFEELAYLNKGLFIECIDER-------IGETHVFHAEGGIRQFVSDLNSGEQGI 241

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
            S    G+         TV++A+ +       I ++ N I T EGGTH  G R ALTR I
Sbjct: 242 HSI-IFGEGVVDNV---TVDFALQYNAGYKENILTFANNIRTKEGGTHLVGFRTALTRAI 297

Query: 343 KKYAELT----QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
             Y +      +  +  S+  DD+      ++SV + +P+F GQTKTKL + +    V  
Sbjct: 298 NGYIKGQADLVKKMKNTSLSGDDVREGLTAVISVKLPQPQFEGQTKTKLGNSEVAGLVSG 357

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            + D  + Y  +NP +   ++E  ++ +  R   R+ +E V RK A+    LPGKLADC 
Sbjct: 358 VVYDRLNIYFEENPKDIRLIIEKAVDAARARDAARRAKELVRRKGALSDNALPGKLADCQ 417

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +ELFIVEGDSAGGSAKQ RN  NQA+LPLRGKILN      +K+  N+++  L+
Sbjct: 418 SKDPSESELFIVEGDSAGGSAKQGRNPRNQAILPLRGKILNTERTRFDKMLANKEVKALI 477

Query: 518 QALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
            A+G        + E LRY K+IIMTDADVDGAHI +LLLTFF+++  +++E+  +++  
Sbjct: 478 TAMGAGIGEDDTDLEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQYQEMVERGFVYIAQ 537

Query: 577 PPLFRITQGTKSVYAHDEEHKQKIL 601
           PPL+R+       +  D+      L
Sbjct: 538 PPLYRVHNSRMEKFIKDDAELNSFL 562



 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 606 KHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT 665
              +  I I R+KGLGEM   QL  T M+   R LL+V ++       +  D+  +LMG 
Sbjct: 725 DEARKGINIQRYKGLGEMNPEQLWVTTMNPENRILLQVSVDDAN----EASDAFMELMGD 780

Query: 666 KADERFKFIQERASFIDDVG 685
           + + R +FI+  A  + D+ 
Sbjct: 781 RVEPRREFIERNALAVHDLD 800


>gi|307719924|ref|YP_003891064.1| DNA gyrase subunit B [Sulfurimonas autotrophica DSM 16294]
 gi|306978017|gb|ADN08052.1| DNA gyrase subunit B [Sulfurimonas autotrophica DSM 16294]
          Length = 772

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 240/564 (42%), Positives = 330/564 (58%), Gaps = 18/564 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y AS+I++L+GLE VR RPGMYIG T  + LHHL  EVIDN++DE +AGY + I V+L
Sbjct: 3   QEYGASNIKVLKGLEAVRKRPGMYIGDTGHRGLHHLVYEVIDNSIDEAMAGYCDTITVTL 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             NG   V DNGRGIP + HP   N S   ++LT LHAGGKFD  TY++SGGLHGVG+SV
Sbjct: 63  TKNGTCKVSDNGRGIPTDMHP-TENMSAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS +LH+T+ R+  I  Q F  GIP  PLE     R    T I F  DP IF +   
Sbjct: 122 VNALSSDLHMTIYREGKIHEQDFKMGIPQGPLEVTGTTRKTG-TTIEFAADPSIFTETIT 180

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F+   L K  +  AYL+  +   ++ ++   +       E ++F GG+  Y+    +   
Sbjct: 181 FEYEYLAKRFKELAYLNPFITIKFNDERTNTK-------EVYHFEGGIAQYVSDMNKREV 233

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340
           + +   F+GK E         + AI + +   E   S+ N I T  GGTHE+G R  LTR
Sbjct: 234 VANVYSFSGKAED-----IEFDIAIMYNDSYEEKLASFVNNIRTPNGGTHEAGFRAGLTR 288

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  Y        ++ + I  DD+    + I+S  + EP+F GQTK KL +   +  ++ 
Sbjct: 289 VISNYNSKNGAAKEKDVKISGDDVKEGLIAIVSARVPEPQFEGQTKGKLGNTYVRPLIQK 348

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
           A  +  + Y  +NPIEA  ++   +  +  R   +K RE   RK ++    LPGKLADC 
Sbjct: 349 ATGEALNKYFEENPIEAKAIVSKALMAARGREAAKKARELTRRKDSMSVGTLPGKLADCQ 408

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
              A   EL++VEGDSAGGSAK  R+R  QA+LPL+GKILNV  A  EKI  + +I +++
Sbjct: 409 SKDASICELYLVEGDSAGGSAKMGRDRVFQAILPLKGKILNVEKARLEKILKSDEITNMI 468

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A+GC    +Y EE LRY K+IIMTDADVDG+HI +LLLTFF++   D+IE+ +L+L  P
Sbjct: 469 TAMGCGIGEEYNEEKLRYHKIIIMTDADVDGSHIQTLLLTFFFRYFRDIIEKGYLYLAQP 528

Query: 578 PLFRITQGTKSVYAHDEEHKQKIL 601
           PL+R  +G K +Y  D+      L
Sbjct: 529 PLYRYKKGKKEIYFKDDRAMNDYL 552



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
           ++   ++LE+ K + K    I R+KGLGEM   QL ET M    R LL++ I       +
Sbjct: 684 DKDIIEVLEDIKDYAKKGAYIQRYKGLGEMNPEQLWETTMTPENRVLLQISIED----AE 739

Query: 654 DTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              D+    MG + + R  +I+  A  +  + 
Sbjct: 740 VASDAFTLFMGDEVEPRRNYIETHAKDVKHLD 771


>gi|284041476|ref|YP_003391816.1| DNA gyrase B subunit [Conexibacter woesei DSM 14684]
 gi|283945697|gb|ADB48441.1| DNA gyrase, B subunit [Conexibacter woesei DSM 14684]
          Length = 808

 Score =  488 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 232/578 (40%), Positives = 335/578 (57%), Gaps = 17/578 (2%)

Query: 29  IPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDE 88
             D PA    + S +YDA  I +LEGLE VR RPGMYIG T  + LHHL  EV+DN++DE
Sbjct: 2   ATDKPAADKPTPSPSYDAQDITVLEGLEAVRKRPGMYIGSTGIRGLHHLVYEVVDNSVDE 61

Query: 89  VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA-GGKFDNST 147
            +AG+A+ ++V++  +  +TVVDNGRGIPV    K   K  +E++LT LHA G   D   
Sbjct: 62  ALAGHASAVDVTIHPDNSITVVDNGRGIPVAMMEK-EGKPAVEVVLTVLHAGGKFGDGGG 120

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS++L V + R    +SQ + RG P   LE+  +  ++ GT I
Sbjct: 121 YKVSGGLHGVGVSVVNALSEQLRVEIFRDGFAWSQDYVRGAPQGQLER-GEATSETGTTI 179

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
           TF PD +I      FD   L +  +  A+L+  ++   + ++            EF + G
Sbjct: 180 TFLPDDEIMES-LDFDFTTLEERLRETAFLTRGLRISLTDERG------ERRHVEFQYDG 232

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G++ ++    EN+  +  +I    +E      G VE A+ W       + S+ N I T E
Sbjct: 233 GIQDFVAYLNENKDPVQRKIVYFSSESD---EGAVEVAMQWNSSYQESVFSFANNINTHE 289

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GG+H SG R ALTR I KYA       +R  ++  +D+      ++S  + EP+F GQTK
Sbjct: 290 GGSHLSGFRSALTRTINKYAREKGFLKERDANLAGEDVREGLTAVISAKLAEPQFEGQTK 349

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATK-LLEWVIERSEERLRRRKQREVNRKTA 443
           TKL +   Q   E+ +    D +L +NP +A   +L+ V         R+ +    RK+A
Sbjct: 350 TKLGNPGMQGFTESIVNKGLDEFLEENPQDARSVILKAVQAAQARSAARKARDLTRRKSA 409

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +   RLPGKLADCS      +E+FIVEGDSAGGSAKQ R+RS QA+LPLRGKILNV  A 
Sbjct: 410 LENSRLPGKLADCSVKDPALSEIFIVEGDSAGGSAKQGRDRSTQAILPLRGKILNVERAR 469

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            +K+  N ++  L+ A+G   R  +  E  RY K+I+MTDADVDGAHI +L+LT  ++EM
Sbjct: 470 IDKVLGNNEVQALITAIGTGVRDDFDLEKARYHKIILMTDADVDGAHIRTLVLTLLFREM 529

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
             LI+   +++  PPL+++ QG    Y   +   +++L
Sbjct: 530 MPLIDAGFIYIAKPPLYKLKQGKNERYIEKDSELEEML 567



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 36/109 (33%), Positives = 50/109 (45%), Gaps = 7/109 (6%)

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
            P F I  G     A       ++           +EI+RFKGLGEM A QL+ET MD  
Sbjct: 706 TPPFDIRLGDHRETAVS---FDELRSRVMDMAGRGVEINRFKGLGEMNAEQLRETTMDPA 762

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            RTL RV +          +   + LMG + + R  FI+E AS + ++ 
Sbjct: 763 TRTLARVTMED----AAAAERVFSMLMGDQVEPRRNFIEENASLVTNLD 807


>gi|81251043|gb|ABB69854.1| DNA gyrase subunit B [Nitrosospira multiformis]
          Length = 555

 Score =  488 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 228/558 (40%), Positives = 335/558 (60%), Gaps = 19/558 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94
               +S +Y + SI+IL+GL+ VR RPGMYIG T D   LHH+  EV+DNA+DE +AGY 
Sbjct: 10  QKSKSSADYGSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVLDNAIDEALAGYC 69

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFP-NKSTLEIILTTLHAGGKFDNSTYEISGG 153
           + I V +  +  +TV DNGRGIP          +S  EI++T LHAGGKFD+ +Y++SGG
Sbjct: 70  DEISVIIHPDNSVTVQDNGRGIPTGIKQDDELKRSAAEIVMTELHAGGKFDSDSYKVSGG 129

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS+ L +++ R   I   +F  G+P+ PL    K   +RGT + F    
Sbjct: 130 LHGVGVSVVNALSEWLRLSIRRDGKIHQIEFRMGVPVGPLATTGKT-ERRGTEVHFLASK 188

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IFGD   +      K  +  ++L+  VK      +   E       E F F GG+K+++
Sbjct: 189 EIFGDI-EYHYDIFAKRLRELSFLNNGVKIHLIDQRNAKE-------ETFAFVGGVKSFV 240

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +     +S++   IF    EK    R  VE ++ W +    ++  + N I   +GGTH +
Sbjct: 241 EYVNRTKSVLHPNIFYAAGEKD---RIAVEVSMQWNDSYTEQVLCFTNNIPQKDGGTHLT 297

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           GLR A+TR +  Y E +    K  I    DD+      +LSV + EP+F+ QTK KLVS 
Sbjct: 298 GLRAAMTRTLNNYIEKSDLAKKAKIETSGDDMREGLSCVLSVKLFEPKFSSQTKEKLVSS 357

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRL 449
           + +  VE  +      +L+++P++A  +   +IE +  R   RK RE+ R+   +  + L
Sbjct: 358 EVRPVVEEIVSLKLAEFLMEHPVDAKIICGKIIEAARAREAARKARELTRRKGVLDGMGL 417

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +EL++VEGDSAGGSAKQ R+R  QA++PL+GKILNV  A  +K+ +
Sbjct: 418 PGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKARFDKLIS 477

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q+I  L+ ALG    + +Y  + LRY ++IIMTDADVDG+HI +LLLTFFY++M +LIE
Sbjct: 478 SQEIASLITALGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIE 537

Query: 569 QKHLFLISPPLFRITQGT 586
           + H+F+  PPL++I  G 
Sbjct: 538 RGHIFIAQPPLYKIKHGK 555


>gi|81251066|gb|ABB69871.1| DNA gyrase subunit B [Nitrosospira sp. PJA1]
          Length = 555

 Score =  488 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 227/558 (40%), Positives = 336/558 (60%), Gaps = 19/558 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94
               +S +Y + SI+IL+GL+ VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ 
Sbjct: 10  QKSKSSTDYGSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVLDNAIDEALAGHC 69

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFP-NKSTLEIILTTLHAGGKFDNSTYEISGG 153
           + I V +  +  +TV DNGRGIP          +S  EI++T LHAGGKFD+ +Y++SGG
Sbjct: 70  DEISVIIHPDNSITVQDNGRGIPTGIKQDDELKRSAAEIVMTELHAGGKFDSDSYKVSGG 129

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS+ L +++ R   I   +F  G+P++PL    K   +RGT + F    
Sbjct: 130 LHGVGVSVVNALSEWLRLSIRRDGKIHQIEFRMGVPVAPLAATGKT-ERRGTEVHFLASK 188

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IFGD   +      K  +  ++L+  VK      +   E       E F F GG+K+++
Sbjct: 189 EIFGDI-EYHYDIFAKRLRELSFLNNGVKIHLVDQRNAKE-------ETFAFVGGVKSFV 240

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +     +S++   IF    EK    R  VE ++ W +    ++  + N I   +GGTH +
Sbjct: 241 EYVNRTKSVLHPNIFYATGEKD---RIVVEVSMQWNDSYTEQVLCFTNNIPQKDGGTHLT 297

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           GLR A+TR +  Y E +    K  I    DD+      +LSV + EP+F+ QTK KLVS 
Sbjct: 298 GLRAAMTRTLNNYIEKSDLAKKAKIETSGDDMREGLSCVLSVKLFEPKFSSQTKEKLVSS 357

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRL 449
           + +  VE  +      +L+++P++A  +   +IE +  R   RK RE+ R+   +  + L
Sbjct: 358 EVRPVVEEIVSLKLAEFLMEHPVDAKIICGKIIEAARAREAARKARELTRRKGVLDGMGL 417

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +EL++VEGDSAGGSAKQ R+R  QA++PL+GKILNV  A  +K+ +
Sbjct: 418 PGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKARFDKLIS 477

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q+I  L+ ALG    + +Y  + LRY ++IIMTDADVDG+HI +LLLTFFY++M +LIE
Sbjct: 478 SQEIASLITALGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIE 537

Query: 569 QKHLFLISPPLFRITQGT 586
           + H+F+  PPL++I  G 
Sbjct: 538 RGHIFIAQPPLYKIKHGK 555


>gi|81251051|gb|ABB69860.1| DNA gyrase subunit B [Nitrosospira sp. HBN8222A]
 gi|81251059|gb|ABB69866.1| DNA gyrase subunit B [Nitrosospira sp. TCH711]
 gi|81251063|gb|ABB69869.1| DNA gyrase subunit B [Nitrosospira sp. TCH716]
          Length = 555

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 227/558 (40%), Positives = 336/558 (60%), Gaps = 19/558 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94
               +S +Y + SI+IL+GL+ VR RPGMYIG T D   LHH+  EV+DNA+DE +AGY 
Sbjct: 10  QKSKSSTDYGSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVLDNAIDEALAGYC 69

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFP-NKSTLEIILTTLHAGGKFDNSTYEISGG 153
           + I V +  +  +TV DNGRGIP          +S  EI++T LHAGGKFD+ +Y++SGG
Sbjct: 70  DEISVIIHPDNSVTVQDNGRGIPTGIKQDDELKRSAAEIVMTELHAGGKFDSDSYKVSGG 129

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS+ L +++ R   +   +F  G+P++PL    K   +RGT + F    
Sbjct: 130 LHGVGVSVVNALSEWLRLSIRRDGKVHQIEFRMGVPMTPLAVTGKT-ERRGTEVHFLASK 188

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IFGD   +      K  +  ++L+  VK      +   E       E F F GG+K+++
Sbjct: 189 EIFGDI-EYHYDIFAKRLRELSFLNNGVKIHLVDQRNAKE-------ETFAFVGGVKSFV 240

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +     +S++   IF    EK    R  VE ++ W +    ++  + N I   +GGTH +
Sbjct: 241 EYVNRTKSVLHPNIFYAAGEKD---RIVVEVSMQWNDSYTEQVLCFTNNIPQKDGGTHLT 297

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           GLR A+TR +  Y E +    K  I    DD+      +LSV + EP+F+ QTK KLVS 
Sbjct: 298 GLRAAMTRTLNNYIEKSDLAKKAKIETSGDDMREGLSCVLSVKLFEPKFSSQTKEKLVSS 357

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRL 449
           + +  VE  +      +L+++P++A  +   +IE +  R   RK RE+ R+   +  + L
Sbjct: 358 EVRPVVEEIVSLKLAEFLMEHPVDAKIICGKIIEAARAREAARKARELTRRKGVLDGMGL 417

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +EL++VEGDSAGGSAKQ R+R  QA++PL+GKILNV  A  +K+ +
Sbjct: 418 PGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKARFDKLIS 477

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q+I  L+ ALG    + +Y  + LRY ++IIMTDADVDG+HI +LLLTFFY++M +LIE
Sbjct: 478 SQEIASLITALGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIE 537

Query: 569 QKHLFLISPPLFRITQGT 586
           + H+F+  PPL++I  G 
Sbjct: 538 RGHIFIAQPPLYKIKHGK 555


>gi|323137236|ref|ZP_08072315.1| DNA gyrase, B subunit [Methylocystis sp. ATCC 49242]
 gi|322397594|gb|EFY00117.1| DNA gyrase, B subunit [Methylocystis sp. ATCC 49242]
          Length = 810

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 233/570 (40%), Positives = 337/570 (59%), Gaps = 21/570 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            Y A SI++L GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+A  + V+L
Sbjct: 12  EYGAESIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVYEVVDNAIDEALAGHATRVTVTL 71

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G  +V DNGRGIP + HP+    S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SV
Sbjct: 72  NADGSCSVTDNGRGIPTDIHPE-EGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSV 130

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-----RNKRGTRITFRPDPKIF 216
           VNALS  L + + R     + +F+ G  ++ L           + KRGT +TF P    F
Sbjct: 131 VNALSVWLKLRIWRNGKEHAMEFANGDAVTKLAIVGDAPIEDGKPKRGTEVTFLPSTATF 190

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                FD A +    +  A+L+  V+   +  +    K      EE ++ GGL+ +++  
Sbjct: 191 T-MVEFDYATIEHRLRELAFLNSGVRIVLTDARHAEVKR-----EELFYEGGLEAFVRWL 244

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335
              +S + S       ++      +VE A+ W +   E   ++ N I   +GGTH +G R
Sbjct: 245 DRAKSPLISAPILVNGKRDHI---SVEVALWWNDSYHENVLAFTNNIPQRDGGTHLAGFR 301

Query: 336 VALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR I  YA+ +   +   +    DD       +LSV + +P+F+ QTK KLVS + +
Sbjct: 302 AALTRQITGYADSSGLTKREKVDLSGDDCREGLTCVLSVKVPDPKFSSQTKDKLVSSEVR 361

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
             VEN + +    +L ++P EA  ++  V+E +  R   RK RE   RK A+    LPGK
Sbjct: 362 PAVENVMNEILGQWLEEHPAEAKNIVSKVVEAAAAREAARKARELTRRKGALDVANLPGK 421

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +     +ELFIVEGDSAGG+AKQ R+R+ QAVLPLRGKILNV  A  +K+ +++Q
Sbjct: 422 LADCQERDPAKSELFIVEGDSAGGTAKQGRDRAFQAVLPLRGKILNVERARFDKMLSSEQ 481

Query: 513 IMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           I  L+ ALG          + LRY K+IIMTDADVDGAHI +L+LTFFY++M +LIE+ H
Sbjct: 482 IGTLITALGTGVGRDEFNADKLRYHKIIIMTDADVDGAHIRTLILTFFYRQMPELIERGH 541

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +F+   PL+++T+G  + Y  DE   +  L
Sbjct: 542 VFIAQAPLYKVTKGKSTQYLKDERALEDYL 571



 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            + E   + G+  + I R+KGLGEM A QL ET +D   R+LL+V++        +  D 
Sbjct: 727 ALYEAMNQIGRKGLTIQRYKGLGEMNAEQLWETTLDREARSLLQVKV----KEAAEADDI 782

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R +FIQE A  + ++ 
Sbjct: 783 FVKLMGDVVEPRREFIQENALSVANLD 809


>gi|315639365|ref|ZP_07894527.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Campylobacter
           upsaliensis JV21]
 gi|315480691|gb|EFU71333.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Campylobacter
           upsaliensis JV21]
          Length = 770

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 242/661 (36%), Positives = 355/661 (53%), Gaps = 51/661 (7%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY   +I++L+GLE VR RPGMYIG T+   LHH+  EV+DN++DE +AG+ + I++ L
Sbjct: 3   ENYGEGNIKVLKGLEAVRKRPGMYIGDTNINGLHHMIYEVVDNSIDEAMAGHCDTIDIEL 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV  HP   N  TL ++LT LHAGGKFD  TY++SGGLHGVG+SV
Sbjct: 63  TTEGSCIVSDNGRGIPVGMHP-TENMPTLTVVLTVLHAGGKFDQDTYKVSGGLHGVGVSV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS +L  TV R+  I+ Q+F++G   S      + +   GT I F PD +IF     
Sbjct: 122 VNALSKKLVATVQREGKIYRQEFAKGQIASEFGIIGESKK-TGTSIEFFPDEEIFELT-E 179

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L K  +  AYL+ ++   +  ++       +   E F+F GG+  ++     N+ 
Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNR-------VGRNESFHFEGGISQFVS--DLNKK 230

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340
              ++      ++       VE A+ + +   E   S+ N I T +GGTHE+G R+ LTR
Sbjct: 231 QALTKPIFFSVDEDNV---NVEVALLYNDTYSENLLSFVNNIKTPDGGTHETGFRMGLTR 287

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  Y E      ++   I  +D+    + I+SV + EP+F GQTK KL S   +  V  
Sbjct: 288 VITNYVEANASAREKDNKITGEDVREGLIAIVSVKVPEPQFEGQTKGKLGSSYVRPIVNK 347

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
           A  +    Y  +NPIEA  ++   +  +  R   +K RE   +K ++    LPGKLADC 
Sbjct: 348 ASFEYLSKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQ 407

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +E+++VEGDSAGGSAKQ R R+ QA+LPLRGKILNV  A  +KI  ++QI +++
Sbjct: 408 SKDPSESEIYLVEGDSAGGSAKQGRERAFQAILPLRGKILNVEKARLDKILKSEQIQNMI 467

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A GC     +    LRY K+IIMTDADVDG+HI +LLLTFF++ M +L+   H++L  P
Sbjct: 468 TAFGCGIGEDFDLTKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQP 527

Query: 578 PLFRITQG-TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET----- 631
           PL+R  +G  + +Y  DE+   + L E          I    GL     + LK+      
Sbjct: 528 PLYRYKKGQKREIYLKDEKALNEFLIEVGIENSNYEGI----GL-----NDLKDFLKIVA 578

Query: 632 -----AMDANKR----TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
                  D  KR    +++R  I          ++    +          F++++   I 
Sbjct: 579 AYRSVLKDLEKRFNVISVIRYLIENPDLIKNSNEELFKII--------KAFLEKQGHNIL 630

Query: 683 D 683
           +
Sbjct: 631 N 631



 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 18/117 (15%)

Query: 578 PLFRITQGTKSVYAHD---EEHKQ------KILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           PL+     T++ Y      E           IL+E +K+ K    I R+KGLGEM   QL
Sbjct: 662 PLY-----TEASYIFTKIKERELNFERDILDILDEVEKNAKKGAYIQRYKGLGEMNPEQL 716

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            ET MD + R LL++ I       K   D+ N  MG + + R  +IQ  A  +  + 
Sbjct: 717 WETTMDPSIRRLLKITIED----AKRADDTFNLFMGDEVEPRRDYIQAHAKDVKHLD 769


>gi|91785916|ref|YP_546868.1| DNA gyrase subunit B [Polaromonas sp. JS666]
 gi|91695141|gb|ABE41970.1| DNA gyrase subunit B [Polaromonas sp. JS666]
          Length = 874

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 226/602 (37%), Positives = 331/602 (54%), Gaps = 39/602 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGY 93
                AS+ Y   SI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +AG+
Sbjct: 33  TNQAGASEAYGEGSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGH 92

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
            + I V++  +  ++V DNGRGIP          P +S  EI LT LHAGGKF+ ++Y++
Sbjct: 93  CDDIVVTIHTDNSISVTDNGRGIPTGIKMDDKHEPKRSAAEIALTELHAGGKFNQNSYKV 152

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP-----------LEKKEKV 199
           SGGLHGVG+S VNALS  L +T+ R   +   +FSRG   +              K    
Sbjct: 153 SGGLHGVGVSCVNALSKMLRLTIRRDGKVHVMEFSRGFVQNRIIEQINGVDVSPMKVMDH 212

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            +KRGT + F PD +IF +   F    L K  +  ++L+  V+     ++   E      
Sbjct: 213 TDKRGTEVHFLPDTEIFKENNDFHYEILSKRLRELSFLNNGVRIRLKDERSGKEDD---- 268

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK--KGTHRGTVEWAIAWCEENPEI-T 316
              F   GG+K +++   + ++++   +F    ++         VE A+ W     E   
Sbjct: 269 ---FAGAGGVKGFVEFINKGKTVLHPNVFAAMGDRQSDQGTNIGVEVAMQWNSGYSEQVL 325

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
            + N I   +GGTH +GLR A+TR I KY + ++   K  + +  DD+      +LSV +
Sbjct: 326 CFTNNIPQRDGGTHLTGLRAAMTRVINKYIDDSELAKKAKVEVTGDDMREGLCCVLSVKV 385

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP+F+ QTK KLVS + +  VE+ +      YL + P +A  ++  +IE +  R   RK
Sbjct: 386 PEPKFSSQTKDKLVSSEVRGPVEDIVSRLLHDYLQERPNDAKIIVGKIIEAARAREAARK 445

Query: 435 QREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            R++ R+   +  + LPGKLADC +      E+++VEGDSAGGSAKQ R+R  QA+LPLR
Sbjct: 446 ARDMTRRKGVLDGMGLPGKLADCQEKDPAMCEIYLVEGDSAGGSAKQGRDRKFQAILPLR 505

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRT-----------RSQYREEDLRYEKVIIMT 542
           GKILNV  A  EK+  + +I+ L+ ALG                 +    LRY ++IIMT
Sbjct: 506 GKILNVEKARYEKLLTSNEILTLITALGTGIGKAGGIGGTPGTDDFNVAKLRYHRIIIMT 565

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILE 602
           DADVDGAHI +LLLTFFY++M +L+E+ H+++  PPL+++  G +  Y  D       L 
Sbjct: 566 DADVDGAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKAGKEEQYLKDTAALDGFLL 625

Query: 603 EF 604
             
Sbjct: 626 RI 627



 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
            R+KGLGEM  +QL ET MD   R LLRV+I+  +    +       LMG + + R +FI
Sbjct: 807 QRYKGLGEMNPAQLWETTMDPQVRRLLRVQIDDAI----EADHVFTMLMGDEVEPRREFI 862

Query: 675 QERASFIDDVG 685
           ++ A    ++ 
Sbjct: 863 EQNALRAANID 873


>gi|303273552|ref|XP_003056137.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462221|gb|EEH59513.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 629

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 233/637 (36%), Positives = 347/637 (54%), Gaps = 24/637 (3%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIG T  K LHHL  EV+DN++DE+ AG+A++I V L+ +GF++V D+GRGIP + HP 
Sbjct: 1   MYIGNTSTKGLHHLVWEVLDNSVDEIQAGHASVITVVLEPDGFVSVEDDGRGIPTDVHP- 59

Query: 124 FPNKSTLEIILTTLHAGGKFDNST--YEISGGLHGVGISVVNALSDELHVTVARQNTIFS 181
               S+LE +LT LHAGGKF      Y +SGGLHGVGISVVNALS+   VTV +   +F+
Sbjct: 60  ATGVSSLETVLTVLHAGGKFGGDESGYHVSGGLHGVGISVVNALSELCEVTVWKGGKVFT 119

Query: 182 QKFSRGIPLSPLEK--KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
           Q FSRG  ++ + +  +     K GTR+ F+PD +IF +KA FD   ++   +  A+L+ 
Sbjct: 120 QAFSRGYAVADMTESFEPGADGKNGTRVRFKPDHQIFKEKASFDPNIIISRMKELAFLNS 179

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
                +    ++ +K    +     FPGGLK Y+         +   I      +     
Sbjct: 180 TATLKFRIPVDVHKKMTRKKANILSFPGGLKDYVVDLNMGSETLHDPITFRSEVEGVQVE 239

Query: 300 GTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISI 357
           G ++W             Y N+I T +GG+H  GL+ ALTR +   A   +  +    ++
Sbjct: 240 GALQWT--REAFTDTTLGYANSIRTSDGGSHLDGLKFALTRTVNAQARKAKLLKDGDSNL 297

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             + +      +L+V++ +PEF GQTKT+L + + ++ VE  + +    +L   P     
Sbjct: 298 GGEHVREGLSAVLAVWVPQPEFEGQTKTRLGNPEVRKVVEAVIGEQIAEHLEFYPSVLQS 357

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           +     + ++     ++ RE V RK+ +R   LPGKL+DCS +    +E+F+VEGDSAGG
Sbjct: 358 IFNKAQQAAKAAEAAKRARELVRRKSVLRSGSLPGKLSDCSNSDPDISEIFLVEGDSAGG 417

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRY 535
           SAKQ R+R  QAVLPLRGKILNV       +  N +I  +V ALG   +    +E  LRY
Sbjct: 418 SAKQGRDRRFQAVLPLRGKILNVERKDESSMYKNTEISSMVTALGLGLKGDDFDESALRY 477

Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ------GTKSV 589
            K++I+TDADVDGAHI +LLLTF Y+    L E+  +F+  PPL+++        G +S+
Sbjct: 478 SKIVILTDADVDGAHIRTLLLTFLYRYQRALFERGKVFVAVPPLYKVEHTDGKGGGKRSI 537

Query: 590 -YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648
            Y +DE    K+L       K    I RFKGLGEM+  QL  T ++   R L R+ ++  
Sbjct: 538 TYCYDEVQLAKLLSSLPDDTKR--SIQRFKGLGEMMPEQLWNTTLNPESRLLKRLTVDD- 594

Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
                +   +   LM  K   R  FI+E    ++ + 
Sbjct: 595 ---AAEVNQTFQLLMSDKVAPRRAFIEEEGPKLEAID 628


>gi|87308271|ref|ZP_01090412.1| DNA gyrase subunit B [Blastopirellula marina DSM 3645]
 gi|87288828|gb|EAQ80721.1| DNA gyrase subunit B [Blastopirellula marina DSM 3645]
          Length = 858

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 220/611 (36%), Positives = 338/611 (55%), Gaps = 32/611 (5%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           MT++S        P+++ ++++ + +             A+  Y A  +  L  LE VR 
Sbjct: 1   MTEESTQPLPDSEPENKEAAKQTEMA------------KANSEYGAGDLEHLSDLEHVRE 48

Query: 61  RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           RP MYIG    +  HHL  EV+DN++DE +A +A+ I V++  +  +TV D+GRGIPVE 
Sbjct: 49  RPSMYIGDRGARGFHHLVYEVVDNSIDEAMAEFASAITVTIHNDNSVTVEDDGRGIPVEL 108

Query: 121 HPKFP-----NKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR 175
           HP+       + STLE ++T L  GGKF    Y+ SGGLHGVG++VVN LS+   V V R
Sbjct: 109 HPQLTEQVGRDVSTLEGVMTVLKFGGKFSKGAYQTSGGLHGVGVTVVNFLSEWCEVEVHR 168

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
             +I+ Q++ RG+P  P+ K    +  RGT+ +F+PD +IF     F+   L K  Q  A
Sbjct: 169 DGSIWQQEYQRGVPQGPIRKGGATKK-RGTKTSFKPDSQIFNVS-KFNYDTLYKRLQELA 226

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  VK  +  ++         E  EF +  G+  Y++      + + SE+ + +   +
Sbjct: 227 FLNRGVKIIFKDER-------NDEGGEFQYERGIVEYVEHLNRASTALHSEVISLEGISE 279

Query: 296 GTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA 354
           G      + A+ + EE  E    + N I T EGGTH SG + A+TR +  YA+     + 
Sbjct: 280 GV---GFDIALQYSEEYTENLHSFVNNINTHEGGTHVSGFKTAMTRTLNNYAKKESLLKD 336

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +++  DD       ++S+ +  P+F GQTKTKL + + +  V +A+ +    YL ++P  
Sbjct: 337 LTLAGDDFREGLTCVISLRVPNPQFEGQTKTKLGNSEVEGIVNSAVGEFLGKYLEEHPKI 396

Query: 415 ATKLLEWVIERSEERLRRRKQREV--NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
              ++   I  S+ R   RK RE+  +RK A+    LPGKL DC        EL++VEGD
Sbjct: 397 GKLIIRKAILASQAREAARKAREMMRSRKNALGGGGLPGKLRDCISRDMEICELYLVEGD 456

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           SAGGSA+  R R  QA+LPLRGKI+N   +  +K+  N+++  ++QA+G     +     
Sbjct: 457 SAGGSAEGGRLREFQAILPLRGKIINAYKSREDKVLANEEVQSMIQAIGAGIGEEQDIHK 516

Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAH 592
            RY KVIIMTDADVDG+HI +LLL FFY++MY L+   H+++  PPLFR+T+  +  Y  
Sbjct: 517 RRYNKVIIMTDADVDGSHIRTLLLAFFYRQMYSLVSGGHVYVAQPPLFRVTRKKQITYIQ 576

Query: 593 DEEHKQKILEE 603
            EE  +  L E
Sbjct: 577 TEEEMKTRLLE 587



 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 7/106 (6%)

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           +++ +G         E  + ++   +  G+   +I+RFKGLGEM A +L+ET +D   RT
Sbjct: 759 YKLRRGESES---GIEDLRGLVSAIRAFGEKGQQITRFKGLGEMNAEELRETTLDPANRT 815

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           LL+V +      L    D    LMG K + R +FI++ A  + ++ 
Sbjct: 816 LLKVTMED----LSAADDMFRVLMGDKVEPRREFIEKHALDVRNLD 857


>gi|57506226|ref|ZP_00372145.1| DNA gyrase, B subunit [Campylobacter upsaliensis RM3195]
 gi|57015494|gb|EAL52289.1| DNA gyrase, B subunit [Campylobacter upsaliensis RM3195]
          Length = 770

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 242/661 (36%), Positives = 355/661 (53%), Gaps = 51/661 (7%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY   +I++L+GLE VR RPGMYIG T+   LHH+  EV+DN++DE +AG+ + I++ L
Sbjct: 3   ENYGEGNIKVLKGLEAVRKRPGMYIGDTNINGLHHMIYEVVDNSIDEAMAGHCDTIDIEL 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV  HP   N  TL ++LT LHAGGKFD  TY++SGGLHGVG+SV
Sbjct: 63  TTEGSCIVSDNGRGIPVGMHP-TENMPTLTVVLTVLHAGGKFDQDTYKVSGGLHGVGVSV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS +L  TV R+  I+ Q+F++G   S      + +   GT I F PD +IF     
Sbjct: 122 VNALSKKLVATVQREGKIYRQEFAKGQIASEFGIIGESKK-TGTSIEFFPDEEIFELT-E 179

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L K  +  AYL+ ++   +  ++       +   E F+F GG+  ++     N+ 
Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNR-------VGRNESFHFEGGISQFVS--DLNKK 230

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340
              ++      ++       VE A+ + +   E   S+ N I T +GGTHE+G R+ LTR
Sbjct: 231 QALTKPIFFSVDEDNV---NVEIALLYNDTYSENLLSFVNNIKTPDGGTHETGFRMGLTR 287

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  Y E      ++   I  +D+    + I+SV + EP+F GQTK KL S   +  V  
Sbjct: 288 VITNYVETNASAREKDNKITGEDVREGLIAIVSVKVPEPQFEGQTKGKLGSSYVRPIVNK 347

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
           A  +    Y  +NPIEA  ++   +  +  R   +K RE   +K ++    LPGKLADC 
Sbjct: 348 ASFEYLSKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSIGTLPGKLADCQ 407

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +E+++VEGDSAGGSAKQ R R+ QA+LPLRGKILNV  A  +KI  ++QI +++
Sbjct: 408 SKDPSESEIYLVEGDSAGGSAKQGRERAFQAILPLRGKILNVEKARLDKILKSEQIQNMI 467

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A GC     +    LRY K+IIMTDADVDG+HI +LLLTFF++ M +L+   H++L  P
Sbjct: 468 TAFGCGIGEDFDLTKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQP 527

Query: 578 PLFRITQG-TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET----- 631
           PL+R  +G  + +Y  DE+   + L E          I    GL     + LK+      
Sbjct: 528 PLYRYKKGQKREIYLKDEKALNEFLIEVGIENSNYEGI----GL-----NDLKDFLKIVA 578

Query: 632 -----AMDANKR----TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
                  D  KR    +++R  I          ++    +          F++++   I 
Sbjct: 579 AYRSVLKDLEKRFNVISVIRYLIENPDLIKNSNEELFKII--------KAFLEKQGHNIL 630

Query: 683 D 683
           +
Sbjct: 631 N 631



 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 18/117 (15%)

Query: 578 PLFRITQGTKSVYAHD---EEHKQ------KILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           PL+     T++ Y      E           IL+E +K+ K    I R+KGLGEM   QL
Sbjct: 662 PLY-----TEASYIFTKIKERELNFERDILDILDEVEKNAKKGAYIQRYKGLGEMNPEQL 716

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            ET MD + R LL++ I       K   D+ N  MG + + R  +IQ  A  +  + 
Sbjct: 717 WETTMDPSIRRLLKITIED----AKRADDTFNLFMGDEVEPRRDYIQAHAKDVKHLD 769


>gi|21229482|ref|NP_635399.1| DNA gyrase subunit B [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66766356|ref|YP_241118.1| DNA gyrase subunit B [Xanthomonas campestris pv. campestris str.
           8004]
 gi|188989400|ref|YP_001901410.1| DNA gyrase subunit B [Xanthomonas campestris pv. campestris str.
           B100]
 gi|21110942|gb|AAM39323.1| DNA gyrase subunit B [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66571688|gb|AAY47098.1| DNA gyrase subunit B [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167731160|emb|CAP49332.1| DNA gyrase subunit B [Xanthomonas campestris pv. campestris]
          Length = 814

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 229/580 (39%), Positives = 340/580 (58%), Gaps = 18/580 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGY 93
               + +  YD+S I +L GLE VR RPGMYIG   D   LHH+  EV+DN++DE +AG+
Sbjct: 6   TTPPTPNGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDEALAGH 65

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ I V +  +G + V DNGRG+PV+ H K    S  E+ILT LHAGGKFD+++Y++SGG
Sbjct: 66  ADDIVVKIHVDGSVAVSDNGRGVPVDIH-KEEGVSAAEVILTVLHAGGKFDDNSYKVSGG 124

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS+ L + + R    + Q+++ G P  PL++ E     RGT + F+P  
Sbjct: 125 LHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQLEASTK-RGTTLRFKPAV 183

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IF D   F    L +  +  ++L+  VK     ++          +++F++ GG+++++
Sbjct: 184 EIFSDV-EFHYDILARRLRELSFLNSGVKIALIDERG------EGRRDDFHYEGGIRSFV 236

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   + ++ +   + +   E  G     V+ A+ W +     +  + N I   +GGTH +
Sbjct: 237 EHLAQLKTPLHPNVISVTGEHNGI---VVDVALQWTDAYQETMYCFTNNIPQKDGGTHLA 293

Query: 333 GLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR +  Y E     +   I    DD+    + +LSV + +P F+ QTK KLVS 
Sbjct: 294 GFRGALTRVLSNYIEQNGIAKQAKITLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSS 353

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRL 449
           D +  VENA       +L +NP EA  +   +++ +  R   RK      RK A+    L
Sbjct: 354 DVRPAVENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGL 413

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +ELFIVEGDSAGGSAKQ RNR NQAVLPLRGKILNV  A  +++  
Sbjct: 414 PGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLA 473

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           + Q+  L+ ALG    R +Y  + LRY ++I+MTDADVDG+HI +LLLTFFY++M +LIE
Sbjct: 474 SDQVGTLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIE 533

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           + ++++  PPL+++ QG   +Y  D+      L      G
Sbjct: 534 RGYIYIGLPPLYKLKQGKSELYLKDDAALNAYLASSAVEG 573



 Score =  136 bits (343), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G KS         Q  L E  K G+   ++ RFKGLGEM A QL ET ++ + R LL
Sbjct: 717 ILRGNKSHPITSFAQAQAWLLEEAKRGR---QVQRFKGLGEMNAEQLWETTVNPDTRRLL 773

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +          + LMG   + R  FI++ A  + ++ 
Sbjct: 774 QVRIEDAV----AADQIFSTLMGDVVEPRRDFIEDNALKVSNLD 813


>gi|222109228|ref|YP_002551492.1| DNA gyrase subunit B [Acidovorax ebreus TPSY]
 gi|221728672|gb|ACM31492.1| DNA gyrase, B subunit [Acidovorax ebreus TPSY]
          Length = 868

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 231/624 (37%), Positives = 339/624 (54%), Gaps = 44/624 (7%)

Query: 15  QSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKA 73
            ++ S    ++    P     A+ + SD Y   +I+ILEGLE VR RPGMYIG T D   
Sbjct: 2   TAEQSQPAPEQPISAPAEQPVASVAGSDGYGEGAIQILEGLEAVRKRPGMYIGDTSDGTG 61

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTL 130
           LHHL  EV+DN++DE +AG+ + I V++  +  ++VVDNGRGIP          P +S  
Sbjct: 62  LHHLVFEVVDNSIDEALAGHCDDIVVTIHTDNSISVVDNGRGIPTGVKMDDKHEPKRSAA 121

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS +L +TV R       +FS+G+  
Sbjct: 122 EIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKKLRLTVRRDGQTHQLEFSKGVVQ 181

Query: 191 SP-----------LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
           +              K      KRGT + F PD +IF + + F    L K  +  ++L+ 
Sbjct: 182 NRLIEIVDGFEVSPMKVIGPSEKRGTEVRFLPDTEIFKENSDFHYEILAKRLRELSFLNN 241

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH- 298
            V+     ++   E         F   GG+K +++     + ++    F     +     
Sbjct: 242 GVRIRLIDERTGKEDD-------FSGAGGVKGFVEFINGTKKVLHPTAFHATGARPAETY 294

Query: 299 ------RGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ- 350
                    VE A+ W +    ++  + N I   +GGTH +GLR A+TR I KY E  + 
Sbjct: 295 GGIPGTEIGVEVAMQWNDGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIEQNEL 354

Query: 351 -NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
             K  + +  DD+      +LSV + EP+F+ QTK KLVS + +  VE+ +      YL 
Sbjct: 355 AKKAKVEVSGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVAKALTDYLE 414

Query: 410 QNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFI 468
           + P +A  L   ++E +  R   RK RE+ R+   +  + LPGKLADC +      E++I
Sbjct: 415 EKPNDAKILCGKIVEAARAREAARKAREMTRRKGVLDGMGLPGKLADCQEKDPALCEIYI 474

Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT---- 524
           VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  EK+ ++ +I+ L+ ALG       
Sbjct: 475 VEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARYEKLLSSNEIVTLITALGTGIGKAA 534

Query: 525 -------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
                     +    LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ H+++  P
Sbjct: 535 VESGKSGADDFDVAKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGHIYIAQP 594

Query: 578 PLFRITQGTKSVYAHDEEHKQKIL 601
           PL+++  G + +Y  D       L
Sbjct: 595 PLYKVKNGKEELYLKDAAALDTFL 618



 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 16/125 (12%)

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEE--HKQKILEEFKKHGKGKIEISRFKGL 620
              LI++           ++T+G     A +E+    ++ +       +      R+KGL
Sbjct: 757 FRGLIQEG---------AKVTRGEGEK-AKEEKVGDFRQAMAWLISEAERTTSRQRYKGL 806

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GEM   QL ET MD   R LLRV+I+  +    +       LMG + + R  FI+  A  
Sbjct: 807 GEMNPEQLWETTMDPEVRRLLRVQIDDAI----EADRVFTMLMGDEVEPRRDFIETNALR 862

Query: 681 IDDVG 685
             ++ 
Sbjct: 863 AGNID 867


>gi|146276064|ref|YP_001166223.1| DNA gyrase subunit B [Rhodobacter sphaeroides ATCC 17025]
 gi|145554305|gb|ABP68918.1| DNA gyrase subunit B [Rhodobacter sphaeroides ATCC 17025]
          Length = 811

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 224/580 (38%), Positives = 323/580 (55%), Gaps = 20/580 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
             + Y A SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DN +DE +AG+A  + 
Sbjct: 7   VPEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGHATAVT 66

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V +  +  ++V DNGRGIPV+ H      S  E+I+T LHAGGKFD ++Y++SGGLHGVG
Sbjct: 67  VKIHADSSVSVRDNGRGIPVDMHA-SEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVG 125

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP-----DP 213
           +SVVNALSD L + + R       +F  G  +  L        ++GT + F        P
Sbjct: 126 VSVVNALSDWLELRIWRNGKEHYARFENGETVEHLRVVRDAPGEKGTEVRFLAAAKTNRP 185

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
                   +    L    +  A+L+  V+     ++        P   E ++ GG++ ++
Sbjct: 186 DGTFSNLDYSFKTLENRLRELAFLNSGVRILLEDER-----PAEPLHSELFYEGGVREFV 240

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +    ++S +  E      E+ G     VE A+ W +     +  + N I   +GGTH +
Sbjct: 241 RYLDRSKSPVMPEPIFITGERGGI---GVEIAMWWNDSYHETVLPFTNNIPQRDGGTHLA 297

Query: 333 GLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR I KYA+ +   R        DD       +LSV + +P+F+ QTK KLVS 
Sbjct: 298 GFRGALTRTITKYAQDSGIARREKVDFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 357

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRL 449
           + +  VEN + +    +  +NP  A  ++  ++E +  R   RK R    RKTA+    L
Sbjct: 358 EVRPAVENLVNEKLAEWFEENPAAAKGIVGKIVEAALAREAARKAREMTRRKTAMDVASL 417

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +ELFIVEGDSAGGSAKQ R R NQAVLPLRGKILNV  A  +++ +
Sbjct: 418 PGKLADCQEKDPALSELFIVEGDSAGGSAKQGRARKNQAVLPLRGKILNVERARFDRMLS 477

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           ++ +  L+ ALG    R ++    LRY K+IIMTDADVDGAHI +LLLTFF+++M  +IE
Sbjct: 478 SETVGTLITALGAGIGRDEFDIGKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPAIIE 537

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
              L++  PPL+++ +G   VY  D+      L +    G
Sbjct: 538 GGFLYIAQPPLYKVARGKSEVYLKDQAALDDYLIQQGIEG 577



 Score =  140 bits (353), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 4/88 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L+     G+  + + R+KGLGEM   QL ET +D   RTLL+V++      L +  D 
Sbjct: 728 ALLKAVLAEGEKGLSLQRYKGLGEMNPEQLWETTLDPEARTLLQVKVED----LAEADDI 783

Query: 659 INKLMGTKADERFKFIQERASFIDDVGT 686
             KLMG   + R +FIQ+ A  ++++ T
Sbjct: 784 FTKLMGDVVEPRREFIQQNALNVENLDT 811


>gi|15604433|ref|NP_220951.1| DNA gyrase subunit B [Rickettsia prowazekii str. Madrid E]
 gi|6647531|sp|Q9ZCX2|GYRB_RICPR RecName: Full=DNA gyrase subunit B
 gi|3861127|emb|CAA15027.1| DNA GYRASE SUBUNIT B (gyrB2) [Rickettsia prowazekii]
          Length = 807

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 233/566 (41%), Positives = 332/566 (58%), Gaps = 14/566 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
             +Y A SI++L+GLE VR RPGMYIG   +   LHH+  EV+DN++DE +AGY +L++V
Sbjct: 10  ESSYSADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNSIDEALAGYCDLVQV 69

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L+ NG +TV DNGRGIPVE H +    S  E+I+T LHAGGKFD  +Y+ISGGLHGVG+
Sbjct: 70  TLNKNGSVTVSDNGRGIPVEIHEE-EGISAAEVIMTQLHAGGKFDQQSYKISGGLHGVGV 128

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+ L + + R N  +  +F+ GI  +PL   ++  +K+GT +TF P    F + 
Sbjct: 129 SVVNALSEWLELRIWRNNKEYFIRFNNGITEAPLSIVKENIDKKGTEVTFFPSVGTFTNI 188

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             FD   +    +  A+L+  VK     ++    K        FY+ GG++ Y+Q     
Sbjct: 189 -EFDFVTIEHRLRELAFLNSGVKILLVDNRFEEVKKVE-----FYYTGGIEAYVQYIDRA 242

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  I   I       +     ++E A+ W +     I  + N I   +GGTH S  + A+
Sbjct: 243 KHAIHPCIVVNTVHVE--SGISLELALHWNDSYHENILCFTNNIRQRDGGTHLSAFKSAI 300

Query: 339 TRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR I  Y + T    K       +D       +LSV + +P+F+ QTK KLVS + +  V
Sbjct: 301 TRVITSYLDTTGLNKKTKHDFSGEDTREGICCVLSVKVPDPKFSSQTKDKLVSSEVRPVV 360

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
           ENA+      +  ++P EA  ++  ++E +  R   RK RE   RK+A+    LPGKLAD
Sbjct: 361 ENAVYTKVLEWFEEHPTEAKAIIAKIMEAANAREAARKARELTRRKSALEVSNLPGKLAD 420

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C       +ELFIVEGDSAGG+AKQ R+   QA+LPLRGKILNV  A  +K+  + QI  
Sbjct: 421 CHAKDPAISELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGSDQIGT 480

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           L+ ALG     ++  E LRY KVIIMTDADVDG+HI +LLLTFFY+ M +LI + +L++ 
Sbjct: 481 LITALGISVEREFSLEKLRYHKVIIMTDADVDGSHIRALLLTFFYRHMPELINKGYLYIA 540

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKIL 601
            PPL+++  G   +Y  +E+  Q  L
Sbjct: 541 QPPLYKVKSGASELYLKNEKALQNYL 566



 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           ++L    + GK  I I RFKGLGEM + QL ET +D  KRTLL+V +      + + +  
Sbjct: 724 QLLNTIIECGKKGITIQRFKGLGEMNSDQLWETTLDPTKRTLLQVRV----AEVDEAEGI 779

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            + LMG   + R  FIQ  A  + ++ 
Sbjct: 780 FSTLMGDVVEPRRLFIQANALNVMNLD 806


>gi|21326652|gb|AAL30092.1| DNA gyrase subunit B [Xanthomonas campestris pv. campestris]
          Length = 621

 Score =  487 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 229/580 (39%), Positives = 340/580 (58%), Gaps = 18/580 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGY 93
               + +  YD+S I +L GLE VR RPGMYIG   D   LHH+  EV+DN++DE +AG+
Sbjct: 6   TTPPTPNGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDEALAGH 65

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ I V +  +G + V DNGRG+PV+ H K    S  E+ILT LHAGGKFD+++Y++SGG
Sbjct: 66  ADDIVVKIHVDGSVAVSDNGRGVPVDIH-KEEGVSAAEVILTVLHAGGKFDDNSYKVSGG 124

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS+ L + + R    + Q+++ G P  PL++ E     RGT + F+P  
Sbjct: 125 LHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQLEASTK-RGTTLRFKPAV 183

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IF D   F    L +  +  ++L+  VK     ++          +++F++ GG+++++
Sbjct: 184 EIFSDV-EFHYDILARRLRELSFLNSGVKIALIDERG------EGRRDDFHYEGGIRSFV 236

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   + ++ +   + +   E  G     V+ A+ W +     +  + N I   +GGTH +
Sbjct: 237 EHLAQLKTPLHPNVISVTGEHNGI---VVDVALQWTDAYQETMYCFTNNIPQKDGGTHLA 293

Query: 333 GLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR +  Y E     +   I    DD+    + +LSV + +P F+ QTK KLVS 
Sbjct: 294 GFRGALTRVLSNYIEQNGIAKQAKITLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSS 353

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRL 449
           D +  VENA       +L +NP EA  +   +++ +  R   RK      RK A+    L
Sbjct: 354 DVRPAVENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGL 413

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +ELFIVEGDSAGGSAKQ RNR NQAVLPLRGKILNV  A  +++  
Sbjct: 414 PGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLA 473

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           + Q+  L+ ALG    R +Y  + LRY ++I+MTDADVDG+HI +LLLTFFY++M +LIE
Sbjct: 474 SDQVGTLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIE 533

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           + ++++  PPL+++ QG   +Y  D+      L      G
Sbjct: 534 RGYIYIGLPPLYKLKQGKSELYLKDDAALNAYLASSAVEG 573


>gi|292572202|gb|ADE30117.1| DNA gyrase subunit B [Rickettsia prowazekii Rp22]
          Length = 807

 Score =  487 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 232/566 (40%), Positives = 332/566 (58%), Gaps = 14/566 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
             +Y A SI++L+GLE VR RPGMYIG   +   LHH+  EV+DN++DE +AGY +L++V
Sbjct: 10  ESSYSADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNSIDEALAGYCDLVQV 69

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L+ NG +TV DNGRGIPVE H +    S  E+I+T LHAGGKFD  +Y+ISGGLHGVG+
Sbjct: 70  TLNKNGSVTVSDNGRGIPVEIHEE-EGISAAEVIMTQLHAGGKFDQQSYKISGGLHGVGV 128

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+ L + + R N  +  +F+ GI  +PL   ++  +K+GT +TF P    F + 
Sbjct: 129 SVVNALSEWLELRIWRNNKEYFIRFNNGITEAPLSIVKENIDKKGTEVTFFPSVGTFTNI 188

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             FD   +    +  A+L+  VK     ++    K        FY+ GG++ Y+Q     
Sbjct: 189 -EFDFVTIEHRLRELAFLNSGVKILLVDNRFEEVKKVE-----FYYTGGIEAYVQYIDRA 242

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  I   I       +     ++E A+ W +     I  + N I   +GGTH S  + A+
Sbjct: 243 KHAIHPCIVVNTVHVE--SGISLELALHWNDSYHENILCFTNNIRQRDGGTHLSAFKSAI 300

Query: 339 TRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR I  Y + T    K       +D       +LSV + +P+F+ QTK KLVS + +  V
Sbjct: 301 TRVITSYLDTTGLNKKTKHDFSGEDTREGICCVLSVKVPDPKFSSQTKDKLVSSEVRPVV 360

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
           ENA+      +  ++P EA  ++  ++E +  R   RK RE   RK+A+    LPGKLAD
Sbjct: 361 ENAVYTKVLEWFEEHPTEAKAIIAKIMEAANAREAARKARELTRRKSALEVSNLPGKLAD 420

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C       +ELFIVEGDSAGG+AKQ R+   QA+LPLRGKILNV  A  +K+  + QI  
Sbjct: 421 CHAKDPAISELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGSDQIGT 480

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           L+ ALG     ++  + LRY KVIIMTDADVDG+HI +LLLTFFY+ M +LI + +L++ 
Sbjct: 481 LITALGISVEREFSLKKLRYHKVIIMTDADVDGSHIRALLLTFFYRHMPELINKGYLYIA 540

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKIL 601
            PPL+++  G   +Y  +E+  Q  L
Sbjct: 541 QPPLYKVKSGASELYLKNEKALQNYL 566



 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           ++L    + GK  I I RFKGLGEM + QL ET +D  KRTLL+V +      + + +  
Sbjct: 724 QLLNTIIECGKKGITIQRFKGLGEMNSDQLWETTLDPTKRTLLQVRV----AEVDEAEGI 779

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            + LMG   + R  FIQ  A  + ++ 
Sbjct: 780 FSTLMGDVVEPRRLFIQANALNVMNLD 806


>gi|89901418|ref|YP_523889.1| DNA topoisomerase IV subunit B [Rhodoferax ferrireducens T118]
 gi|89346155|gb|ABD70358.1| DNA topoisomerase IV subunit B [Rhodoferax ferrireducens T118]
          Length = 656

 Score =  487 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 237/666 (35%), Positives = 342/666 (51%), Gaps = 38/666 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
             ++ Y  +SIR+L+GLEPV+ RPGMY   T      H+  E +DNA DE +AG+   I 
Sbjct: 4   KPTNEYSEASIRVLKGLEPVKQRPGMY---TTTDTPLHVIQEALDNAADEALAGHGKKIR 60

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA---GGKFDNSTYEISGGLH 155
           V L  +G +++ D+GRGIP   HP   N   +E++ T LHA     K     Y  SGGLH
Sbjct: 61  VVLHLDGSVSIEDDGRGIPFGLHP-TENAPVIELVFTQLHAGGKFDKGKGGAYSFSGGLH 119

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR--GTRITFRPDP 213
           GVG+SV NAL+  L  T  R+  + S  F+ G  + PL  +E    +R  GT +   PD 
Sbjct: 120 GVGVSVTNALATRLEATTYREGKVASLVFAGGDVIEPLRVREPAPGERKSGTTVRVWPDA 179

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F        A+L+ + +SKA L   V      +K         E + + F GGL  YL
Sbjct: 180 KYFET-LALPMAQLVHLLRSKAVLMPGVTVTLVNEK-------TKETQNWLFKGGLLDYL 231

Query: 274 QTKLENR---SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGT 329
              L       +   + F               W +A+ E+ P    SY N I T  GGT
Sbjct: 232 MQTLAGELVIPVFEGDGFADAQHDNFAEGEGASWCVAFTEDGPLVRESYVNLIPTTAGGT 291

Query: 330 HESGLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           HE+GLR  L   +K + E  +   + + ++ +D+   A  +LS  + +P+F GQ K +L 
Sbjct: 292 HEAGLRDGLFTAVKSFIELHSLLPKGVKLMPEDVFARASYVLSAKVLDPQFQGQIKERLN 351

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR 448
           S DA R V N +R   + +L Q+     KL E  I+ ++ R +  ++ E  + + +  L 
Sbjct: 352 SRDAVRLVSNYVRPALELWLNQHVEYGKKLAELAIKAAQTRQKAGQKVEKRKGSGVAVL- 410

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
            PGKL DC        E+F+VEGDSAGGSAK  R++ +QA+LPLRGK+LN      +++ 
Sbjct: 411 -PGKLTDCESRDLAYNEVFLVEGDSAGGSAKMGRDKESQAILPLRGKVLNTWEVERDRLF 469

Query: 509 NNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
            N +I D+  A+G          D   LRY KV I++DADVDG+HI  LLLT F++    
Sbjct: 470 ANNEIHDISVAIGIDPHGPNDTPDLSGLRYGKVCILSDADVDGSHIQVLLLTLFFKHFPK 529

Query: 566 LIEQKHLFLISPPLFRIT---QGTKS---VYAHDEEHKQKILEEFKKHG--KGKIEISRF 617
           LIE   +F+  PPLFR+    +G K     YA DE     IL++ +K G  +G   ISRF
Sbjct: 530 LIETGRIFVARPPLFRVDAPARGKKQASKAYALDEGELTAILDKLRKEGVREGAWSISRF 589

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQE 676
           KGLGEM A QL +T ++ + R LL V +         TQ    +LMG  +A  R + ++ 
Sbjct: 590 KGLGEMNAEQLWDTTLNPDTRRLLPVHL--GSIDFLQTQGLFTQLMGKGEAAARRELMEL 647

Query: 677 RASFID 682
               ++
Sbjct: 648 HGDAVE 653


>gi|81251078|gb|ABB69880.1| DNA gyrase subunit B [Nitrosospira sp. TYM9]
          Length = 555

 Score =  487 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 227/558 (40%), Positives = 334/558 (59%), Gaps = 19/558 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94
               +S  Y + SI+IL+GL+ VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ 
Sbjct: 10  QKNESSTAYGSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVLDNAIDEALAGHC 69

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVEN-HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           + I V +  +  LTV DNGRGIP    H     +S  EI++T LHAGGKFD+++Y++SGG
Sbjct: 70  DEISVIIHPDNSLTVQDNGRGIPTGIKHDDELKRSAAEIVMTELHAGGKFDDNSYKVSGG 129

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS+ L +T+ R   +   +F  G+P+ PL    K   +RGT + F    
Sbjct: 130 LHGVGVSVVNALSEWLRLTIRRNGQVHQIEFRMGVPVGPLVVTGKT-ERRGTEVHFLASK 188

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IFGD   +      K  +  ++L+  VK      +   E       E F F GG+++++
Sbjct: 189 EIFGDI-EYHYDIFAKRLRELSFLNNGVKIHLVDQRNAKE-------EIFAFVGGVRSFV 240

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +     +S++   IF    EK       VE ++ W +    ++  + N I   +GGTH +
Sbjct: 241 EYVNRTKSVLHPNIFYASGEKDNIM---VEVSMQWNDSYTEQVLCFTNNIPQKDGGTHLT 297

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           GLR A+TR +  Y E  +   K  I    DD+      +LSV + EP+F+ QTK KLVS 
Sbjct: 298 GLRAAMTRTLNSYIEKNEVAKKAKIETSGDDMREGLSCVLSVKLFEPKFSSQTKEKLVSS 357

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRL 449
           + +  VE  +      +L++ P++A  +   +I+ +  R   RK RE+ R+   +  + L
Sbjct: 358 EVRPAVEEIVSQKLAEFLLEQPLDAKTICGKIIDAARAREAARKARELTRRKGVLDGMGL 417

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ +
Sbjct: 418 PGKLADCQEKNPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKLIS 477

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q+I  L+ ALG    + +Y  + LRY ++IIMTDADVDG+HI +LLLTFFY++M +LIE
Sbjct: 478 SQEIASLITALGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIE 537

Query: 569 QKHLFLISPPLFRITQGT 586
           + H+F+  PPL++I  G 
Sbjct: 538 RGHIFIAQPPLYKIKHGK 555


>gi|302878548|ref|YP_003847112.1| DNA topoisomerase (ATP-hydrolyzing) [Gallionella capsiferriformans
           ES-2]
 gi|302581337|gb|ADL55348.1| DNA topoisomerase (ATP-hydrolyzing) [Gallionella capsiferriformans
           ES-2]
          Length = 653

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 239/664 (35%), Positives = 346/664 (52%), Gaps = 39/664 (5%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S  YD SS ++L GLEPVR RPGMY   T     +H+ +EV+DNA DE +AGY+  I V 
Sbjct: 2   STTYDESSFKVLRGLEPVRQRPGMY---TTLDNPNHIITEVVDNACDEALAGYSKNINVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST----YEISGGLHG 156
              +G ++V D GRGIPV  HP+    S +E+  T LH+GGKFD  +    Y  +GGLHG
Sbjct: 59  AHSDGSVSVQDEGRGIPVGIHPE-EGVSVVEVAFTVLHSGGKFDKESGGGAYRFAGGLHG 117

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKI 215
           VG++V NALS  + VTV R       +F  G+  SPL +     + K GT +   PD K 
Sbjct: 118 VGVAVTNALSTAVEVTVFRDGGEHRLRFENGVATSPLAQVATCGKRKSGTTVRAWPDVKY 177

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F      + A+L +  ++KA L   V    + +K    K        + +P GL+ YL  
Sbjct: 178 FDSPL-VNLAQLERALRAKAVLLPGVTITLTIEKTRESKS-------WSYPDGLRGYLME 229

Query: 276 KLENRSLISSEIFTGKTEKKGTH-----RGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330
            L +  L +      +   KG        G         E      SY N I T  GGTH
Sbjct: 230 ALADVELAAPIFTGERYIAKGDEAFVEGEGAAWAFAWAEEGTITRESYVNLIPTWSGGTH 289

Query: 331 ESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           ++G+R  +   +K + +L     + + + SDD+      ILS  + +P F GQTK KLVS
Sbjct: 290 DAGMRDGIFNAVKSFIDLHGMLPKGVKLASDDVFCRVSFILSAKLLDPSFQGQTKEKLVS 349

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
            +A + V   + DP   +L ++     K+ E  I +++ R++  ++ E  + +++  L  
Sbjct: 350 RNALKLVSTMVSDPLLLWLNEHTEYGKKIAEISIRQAQSRMKSTQKIEKKKGSSVAVL-- 407

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKL D ++      ELF+VEGDSAGGSAKQ RN+  QA+LPLRGK+LN      +++ +
Sbjct: 408 PGKLTDAAEYNPARNELFLVEGDSAGGSAKQGRNKEFQAILPLRGKVLNTFEVDRDRLFS 467

Query: 510 NQQIMDLVQALGCRTRSQYREEDL---RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           N ++ D+  A+G    S     DL   RY  + IM DADVDG+HIA+LLLT F++    L
Sbjct: 468 NAEVHDIAVAIGVDPHSMNDNADLSGLRYHSIYIMADADVDGSHIATLLLTLFFRHFPKL 527

Query: 567 IEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKIEISRFK 618
           I   H++L  PPLFRI    QG K    +YA + +    I +   K     G   ISRFK
Sbjct: 528 IAAGHIYLAQPPLFRIDVPAQGKKPLRKLYALNADELTSIEDRLSKEKVRAGSWSISRFK 587

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQER 677
           GLGEM   QL ET M  + R  L V++  D  S    + ++  LM  K +  R ++++  
Sbjct: 588 GLGEMNPLQLWETTMCPDTRRALCVQL--DAASFDSAEQTMTMLMAKKESGSRREWLEYH 645

Query: 678 ASFI 681
            + +
Sbjct: 646 GNEV 649


>gi|148284766|ref|YP_001248856.1| DNA gyrase subunit B [Orientia tsutsugamushi str. Boryong]
 gi|146740205|emb|CAM80488.1| DNA gyrase subunit B [Orientia tsutsugamushi str. Boryong]
          Length = 807

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 241/574 (41%), Positives = 338/574 (58%), Gaps = 14/574 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
               + SD Y+A SI+IL GLE VR+RPGMYIG       LH L  EV+DN+ DE +AG 
Sbjct: 7   MPTNTKSDQYNADSIKILRGLEAVRVRPGMYIGDISNGSGLHQLIYEVLDNSTDESLAGD 66

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
            N IEV L+ NG +TV DNGRGIPV+ H +    S  ++I+T LHAGGKFD + Y++SGG
Sbjct: 67  CNKIEVILNKNGSVTVRDNGRGIPVDIHQE-EGVSAAQVIMTQLHAGGKFDQNAYKVSGG 125

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALSD L + + + N     +F+ G P +PL    +  NK+GT ITF P  
Sbjct: 126 LHGVGVSVVNALSDWLELRIWKNNQEHFMRFNNGEPQNPLSIVGEAPNKQGTEITFYPSI 185

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF     F  + L    +  A+L+  V+   + ++    K        F++ GG+++Y+
Sbjct: 186 AIFTSV-EFSFSELEHRLRELAFLNSSVEFSLTDERSSEVKDVK-----FFYTGGVESYV 239

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHES 332
           Q   + ++ + S I   +T+  G    TVE A+ W +     I  + N I   +GG+H  
Sbjct: 240 QYIDKAKAALHSTISFHQTDSHG---ATVELAMQWNDSFYENIVCFTNNIRQRDGGSHLQ 296

Query: 333 GLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           G R A+TR I KY +    K  I+   DD+      +LS+ + +P+FA QTK KLVS +A
Sbjct: 297 GYRSAVTRAITKYTKDHFPKNNINYNGDDIREGLSCVLSLKLPDPKFASQTKDKLVSPEA 356

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
           +  VE  + +    +L   P E  K++  + E +  R   RK RE   RK+A+    LPG
Sbjct: 357 RAIVEGIVYEKLVEWLEHRPSEGKKIIAKITESALAREAARKARELTRRKSALGVANLPG 416

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC Q     +ELFIVEGDSAGG+AKQ RNR  QA+LPLRGK+LNV  A  +K+  + 
Sbjct: 417 KLADCQQRAPEKSELFIVEGDSAGGTAKQGRNRKFQAILPLRGKVLNVERARFDKMLQSD 476

Query: 512 QIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           QI  L+ ALG    S     + +RY KVIIMTDADVDG+HI +LLLTFFY+ M  +IE+ 
Sbjct: 477 QIGTLITALGTGIGSDDFAIDKIRYHKVIIMTDADVDGSHIRALLLTFFYRYMPTVIEKG 536

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           +L++  PPL++I +G   +Y  +++     L + 
Sbjct: 537 YLYIAQPPLYKIKRGANELYLKNDQALYDYLLKI 570



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L++    GK  + I RFKGLGEM + QL ET +D   RTLL+V+I        + ++ 
Sbjct: 724 ALLDKLLAIGKHGMSIQRFKGLGEMNSDQLWETTLDPENRTLLQVKITD----FDEAEEV 779

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            + LM    + R +FIQ  A  ++++ 
Sbjct: 780 FSTLMSNIVEPRREFIQANALNVNNLD 806


>gi|83309738|ref|YP_420002.1| DNA gyrase subunit B [Magnetospirillum magneticum AMB-1]
 gi|82944579|dbj|BAE49443.1| Type IIA topoisomerase [Magnetospirillum magneticum AMB-1]
          Length = 816

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 218/575 (37%), Positives = 332/575 (57%), Gaps = 15/575 (2%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVI 90
           +   A+ + ++ Y A SI++L GLE VR RPGMYIG TD+   LH +  E +DNA+DE++
Sbjct: 9   NDPHASANGAEEYGAGSIQVLRGLEAVRKRPGMYIGDTDDGSGLHRMIYEAVDNAVDEIM 68

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
            G+ +  +V L+ +G + V DNGRGIPV+ HP+    S  E+ LT LHAGGKF+ ++  I
Sbjct: 69  NGFGDRCDVVLNADGSVLVTDNGRGIPVDIHPE-EGISAAEVALTKLHAGGKFEQNSNRI 127

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           S GLHGVGISVVNALS+ L + + R       +F  G P +PL    +  ++ GT++ F 
Sbjct: 128 SSGLHGVGISVVNALSEWLELRIWRHGKEHFMRFRHGEPEAPLAVVGECGDRTGTQVVFL 187

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P    F     FD   +    +  A+L+ R       ++     +    +   ++ GG++
Sbjct: 188 PSKGTFS-HTDFDFDTVEHRLRELAFLNSRATLLIKDER-----HAETREALLHYEGGVQ 241

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330
            ++Q    ++  + + I     +       ++EW  ++ E       + N +   +GGTH
Sbjct: 242 AFVQWLDRSKEALHAPILIAAEKDVVRLELSMEWTDSYHET---CLCFTNNVPQKDGGTH 298

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR I  YA  +    K  +++  DD+      +LSV + +P+F+ Q K KLV
Sbjct: 299 LAGFRAALTRTINAYANDSGIAKKEKVNLAGDDMREGLTCVLSVKMPDPKFSSQAKEKLV 358

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKL 447
           S + +  VEN + +    +  ++P EA K++  V+E +  R   RK RE+ R+   +   
Sbjct: 359 SSEVRPLVENLVGEKLAEWFEEHPAEARKVVTKVVEAAAAREAARKARELTRRKGVLDIA 418

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR+NQA+LPL+GKILNV  A  +K+
Sbjct: 419 TLPGKLADCQERDPALSELFIVEGDSAGGSAKQGRNRANQAILPLKGKILNVERARFDKM 478

Query: 508 RNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
            ++ +I  L+ A+G     +    +  RY K+IIMTDADVDG+HI +LLLTFFY++M  L
Sbjct: 479 LSSAEIGTLIAAMGTGIGREDFNVDKARYHKIIIMTDADVDGSHIRTLLLTFFYRQMPAL 538

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           IE+ +L++  PPL+R  +G   VY  D+   ++ L
Sbjct: 539 IERGYLYIAQPPLYRAKRGQSEVYLKDDRALEEYL 573



 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            ++    + G+  I I R+KGLGEM   QL ET +D   R+LL+V++        D +  
Sbjct: 733 ALVTAVMEQGRRGIAIQRYKGLGEMNPEQLWETTLDPQARSLLQVKV----AQADDAEQV 788

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            + LMG   + R  FIQ  A  + ++ 
Sbjct: 789 FSTLMGDVVEPRRDFIQTNALKVSNLD 815


>gi|81251047|gb|ABB69857.1| DNA gyrase subunit B [Nitrosospira sp. 9SS1]
          Length = 555

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 227/558 (40%), Positives = 335/558 (60%), Gaps = 19/558 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94
                S +YD+ SI+IL+GL+ VR RPGMYIG T D   LHH+  EV+DNA+DE +AGY 
Sbjct: 10  QKSKGSTDYDSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVLDNAIDEALAGYC 69

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFP-NKSTLEIILTTLHAGGKFDNSTYEISGG 153
           + I V +  +  +TV DNGRGIP          +S  EI++T LHAGGKF++ +Y++SGG
Sbjct: 70  DEISVIIHPDNSITVQDNGRGIPTGIKQDDEFKRSAAEIVMTELHAGGKFNSDSYKVSGG 129

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS+ L +++ R   I   +F  G+P++PL    K   +RGT + F    
Sbjct: 130 LHGVGVSVVNALSEWLRLSIRRDGKIHQIEFRMGVPVAPLAATGKT-ERRGTEVHFLASK 188

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IFGD   +      K  +  ++L+  VK      +   E       E F F GG+K+++
Sbjct: 189 EIFGDI-EYHYDIFAKRLRELSFLNNGVKIHLLDQRNAKE-------ETFAFVGGVKSFV 240

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +     +S++   IF    EK       VE ++ W +    ++  + N I   +GGTH +
Sbjct: 241 EYVNRTKSVLHPHIFYAAGEKDHI---VVEVSMQWNDSYTEQVLCFTNNIPQKDGGTHLT 297

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           GLR A+TR +  Y E +    K  I    DD+      +LSV + EP+F+ QTK KLVS 
Sbjct: 298 GLRAAMTRTLNNYIEKSDLAKKAKIETSGDDMREGLSCVLSVKLFEPKFSSQTKEKLVSS 357

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRL 449
           + +  VE  +      +L+++P++A  +   +IE +  R   RK RE+ R+   +  + L
Sbjct: 358 EVRPVVEEIVSLKLAEFLMEHPVDAKIICGKIIEAARAREAARKARELTRRKGVLDGMGL 417

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +EL++VEGDSAGGSAKQ R+R  QA++PL+GKILNV  A  +K+ +
Sbjct: 418 PGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKARFDKLIS 477

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q+I  L+ ALG    + +Y  + LRY ++IIMTDADVDG+HI +LLLTFFY++M +LIE
Sbjct: 478 SQEIASLITALGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIE 537

Query: 569 QKHLFLISPPLFRITQGT 586
           + H+F+  PPL++I  G 
Sbjct: 538 RGHIFIAQPPLYKIKHGK 555


>gi|81251074|gb|ABB69877.1| DNA gyrase subunit B [Nitrosospira sp. NRS527]
          Length = 555

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 227/558 (40%), Positives = 334/558 (59%), Gaps = 19/558 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94
               +S  Y + SI+IL+GL+ VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ 
Sbjct: 10  QKNESSTAYGSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVLDNAIDEALAGHC 69

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVEN-HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           + I V +  +  LTV DNGRGIP    H     +S  EI++T LHAGGKFD+++Y++SGG
Sbjct: 70  DEISVIIHPDNSLTVQDNGRGIPTGIKHDDELKRSAAEIVMTELHAGGKFDDNSYKVSGG 129

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS+ L +T+ R   +   +F  G+P+ PL    K   +RGT + F    
Sbjct: 130 LHGVGVSVVNALSEWLRLTIRRNGQVHQIEFRMGVPVGPLVVTGKT-ERRGTEVHFLASK 188

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IFGD   +      K  +  ++L+  VK      +   E       E F F GG+++++
Sbjct: 189 EIFGDI-EYHYDIFAKRLRELSFLNNGVKIHLVDQRNAKE-------EIFAFVGGVRSFV 240

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +     +S++   IF    EK       VE ++ W +    ++  + N I   +GGTH +
Sbjct: 241 EYVNRTKSVLHPNIFYASGEKDNIM---VEVSMQWNDSYTEQVLCFTNNIPQKDGGTHLT 297

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           GLR A+TR +  Y E  +   K  I    DD+      +LSV + EP+F+ QTK KLVS 
Sbjct: 298 GLRAAMTRTLNSYIEKNEVAKKAKIETSGDDMREGLSCVLSVKLFEPKFSSQTKEKLVSS 357

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRL 449
           + +  VE  +      +L++ P++A  +   +I+ +  R   RK RE+ R+   +  + L
Sbjct: 358 EVRPAVEEIVSQKLAEFLLEQPLDAKTICGKIIDAARAREAARKARELTRRKGVLDGMGL 417

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ +
Sbjct: 418 PGKLADCQEKNPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKLIS 477

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q+I  L+ ALG    + +Y  + LRY ++IIMTDADVDG+HI +LLLTFFY++M +LIE
Sbjct: 478 SQEIASLITALGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIE 537

Query: 569 QKHLFLISPPLFRITQGT 586
           + H+F+  PPL++I  G 
Sbjct: 538 RGHIFIAQPPLYKIKHGK 555


>gi|81251086|gb|ABB69886.1| DNA gyrase subunit B [Nitrosospira sp. NIJS18]
          Length = 555

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 226/551 (41%), Positives = 331/551 (60%), Gaps = 19/551 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +Y + SI+IL+GL+ VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ + I V +
Sbjct: 17  DYGSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVLDNAIDEALAGHCDEISVII 76

Query: 102 DGNGFLTVVDNGRGIPVEN-HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
             +  +TV DNGRGIP    H     +S  EI++T LHAGGKFD+++Y++SGGLHGVG+S
Sbjct: 77  HPDNSVTVQDNGRGIPTGIKHDDELKRSAAEIVMTELHAGGKFDSNSYKVSGGLHGVGVS 136

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ L +++ R+  I   +F  G+P++PL    K     GT + F    +IFGD  
Sbjct: 137 VVNALSEWLRLSIRREGKIHQIEFRMGVPVAPLAVTGKT-EHSGTEVHFLASKEIFGD-I 194

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +      K  +  ++L+  VK      +   E       E F F GG+K++++     +
Sbjct: 195 EYHYDIFAKRLRELSFLNNGVKIHLVDQRNAKE-------ETFAFVGGVKSFVEYVNRTK 247

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
           S++   IF    EK    R  VE A+ W +   E    + N I   + GTH +GLR A+T
Sbjct: 248 SVLHPNIFYAAGEKD---RIMVEVAMQWNDSYSEQVLCFTNNIPQKDRGTHLTGLRAAMT 304

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  Y E      K  I    DD+      +LSV + EP+F+ QTK KLVS + +  VE
Sbjct: 305 RTLNNYIEKNDLAKKAKIETSGDDMREGLSCVLSVKLFEPKFSSQTKEKLVSSEVRPVVE 364

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADC 456
             +      +L+++P +A  +   +I+ +  R   RK RE+ R+   +  + LPGKLADC
Sbjct: 365 EIVSLKLAEFLLEHPSDAKTICGKIIDAARAREAARKARELTRRKGVLDGMGLPGKLADC 424

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            +     +EL++VEGDSAGGSAKQ R+R  QA++PL+GKILNV  A  +K+ ++Q+I  L
Sbjct: 425 QEKDPALSELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKARFDKLISSQEIAAL 484

Query: 517 VQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           + ALG    + +Y  + LRY ++IIMTDADVDG+HI +LLLTFFY++M +LIE+ H+F+ 
Sbjct: 485 ITALGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIFIA 544

Query: 576 SPPLFRITQGT 586
            PPL++I  G 
Sbjct: 545 QPPLYKIKHGR 555


>gi|91205810|ref|YP_538165.1| DNA gyrase subunit B [Rickettsia bellii RML369-C]
 gi|157827062|ref|YP_001496126.1| DNA gyrase subunit B [Rickettsia bellii OSU 85-389]
 gi|123266189|sp|Q1RHT8|GYRB_RICBR RecName: Full=DNA gyrase subunit B
 gi|91069354|gb|ABE05076.1| DNA gyrase subunit B [Rickettsia bellii RML369-C]
 gi|157802366|gb|ABV79089.1| DNA gyrase subunit B [Rickettsia bellii OSU 85-389]
          Length = 808

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 231/572 (40%), Positives = 333/572 (58%), Gaps = 15/572 (2%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYA 94
             +    +Y A SI++L+GLE VR RPGMYIG   +   LHH+  EV+DNA+DE +AGY 
Sbjct: 5   EEKLNESSYGADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNAIDEALAGYC 64

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           +L+ V L+ NG +TV DNGRGIPVE H +    S  E+I+T LHAGGKFD ++Y++SGGL
Sbjct: 65  DLVRVVLNKNGSVTVSDNGRGIPVEIHEE-EGISAAEVIMTQLHAGGKFDQNSYKVSGGL 123

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD L + + R NT    +F+ GI  +PL   ++  +K+GT +TF P  +
Sbjct: 124 HGVGVSVVNALSDWLELRIWRNNTEHLIRFNNGITEAPLAVVKENVDKKGTEVTFFPSVE 183

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
            F +   FD + +    +  A+L+  VK   + ++    K        FY+ GG++ Y++
Sbjct: 184 TFTNI-EFDFSIIEHRLRELAFLNSGVKILLTDNRFEEVKEVE-----FYYTGGIEAYVK 237

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
                +  + S               ++E A+ W +     I  + N I   +GGTH S 
Sbjct: 238 YLDRAKHAVHS--CIVVNADNTESGISLELAMHWNDSYHENILCFTNNIRQRDGGTHLSA 295

Query: 334 LRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            +  LTR I  Y E T   +        +D       +LSV + +P+F+ QTK KLVS +
Sbjct: 296 FKSGLTRVITAYLENTGLNKKAKNAFSGEDTREGICCVLSVKVPDPKFSSQTKDKLVSSE 355

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VENA+      +  ++P +A  ++  ++E +  R   RK RE   RK+ +    LP
Sbjct: 356 VRPIVENAVYTKVLEWFEEHPADAKLIINKIMEAANAREAARKARELTRRKSVLEVSNLP 415

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC       +ELFIVEGDSAGG+AKQ R+   QA+LPLRGKILNV  A  +K+  +
Sbjct: 416 GKLADCHAKDPAVSELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGS 475

Query: 511 QQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
            QI  L+ ALG    ++    E LRY KVIIMTDADVDG+HI +LLLTFFY+ M +LI +
Sbjct: 476 DQIGTLITALGTGVDNREFSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPELINK 535

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
            +L++  PPL+++ +G   +Y  +E+  Q  L
Sbjct: 536 GYLYIAQPPLYKVKKGASELYLKNEQALQDYL 567



 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 21/135 (15%)

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           I+ L LT F      L              ++    +            +L    + GK 
Sbjct: 694 ISKLALTIFDVFNKQL--------------KLVVKNQEFDILTPS---ILLNTIIECGKK 736

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADER 670
            I + RFKGLGEM + QL +T +D  KRTL++V +      + + +   + LMG   + R
Sbjct: 737 GISVQRFKGLGEMNSDQLWDTTLDPKKRTLMQVRV----AEVDEAEGIFSTLMGDVVEPR 792

Query: 671 FKFIQERASFIDDVG 685
            +FIQ  A  + ++ 
Sbjct: 793 RQFIQSNALNVVNLD 807


>gi|81251082|gb|ABB69883.1| DNA gyrase subunit B [Nitrosospira sp. NIJS16]
          Length = 555

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 227/551 (41%), Positives = 333/551 (60%), Gaps = 19/551 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +Y + SI+IL+GL+ VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ + I V +
Sbjct: 17  DYGSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVLDNAIDEALAGHCDEISVII 76

Query: 102 DGNGFLTVVDNGRGIPVEN-HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
             +  +TV DNGRGIP    H     +S  EI++T LHAGGKFD+++Y++SGGLHGVG+S
Sbjct: 77  HPDNSVTVQDNGRGIPTGIKHDDELKRSAAEIVMTELHAGGKFDSNSYKVSGGLHGVGVS 136

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ L +++ R+  I   +F  G+P++PL    K   + GT + F    +IFGD  
Sbjct: 137 VVNALSEWLRLSIRREGKIHQIEFRMGVPVAPLAVTGKT-ERSGTEVHFLASKEIFGD-I 194

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +      K  +  ++L+  VK      +   E       E F F GG+K++++     +
Sbjct: 195 EYHYDIFAKRLRELSFLNNGVKIHLVDQRNAKE-------ETFAFVGGVKSFVEYVNRTK 247

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
           S++   IF    EK    R  VE A+ W +   E    + N I   +GGTH +GLR A+T
Sbjct: 248 SVLHPNIFYAAGEKD---RIMVEVAMQWNDSYSEQVLCFTNNIPQKDGGTHLTGLRAAMT 304

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  Y E      K  I    DD+      +LSV + EP+F+ QTK KLVS + +  VE
Sbjct: 305 RTLNNYIEKNDLAKKAKIETSGDDMREGLSCVLSVKLFEPKFSSQTKEKLVSSEVRPVVE 364

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADC 456
             +      +L+++P +A  +   +I+ +  R   RK RE+ R+   +  + LPGKLADC
Sbjct: 365 EIVSLKLAEFLLEHPSDAKTICGKIIDAARAREAARKARELTRRKGVLDGMGLPGKLADC 424

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            +     +EL++VEGDSAGGSAKQ R+R  QA++PL+GKILNV  A  +K+ ++Q+I  L
Sbjct: 425 QEKDPALSELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKARFDKLISSQEIAAL 484

Query: 517 VQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           + ALG    + +Y  + LRY ++IIMTDADVDG+HI +LLLTFFY++M +LIE+ H+F+ 
Sbjct: 485 ITALGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIFIA 544

Query: 576 SPPLFRITQGT 586
            PPL++I  G 
Sbjct: 545 QPPLYKIKHGR 555


>gi|319945020|ref|ZP_08019282.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lautropia mirabilis
           ATCC 51599]
 gi|319741590|gb|EFV94015.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lautropia mirabilis
           ATCC 51599]
          Length = 851

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 233/604 (38%), Positives = 341/604 (56%), Gaps = 37/604 (6%)

Query: 23  LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEV 81
              +     S     Q     YD+SSI+ILEGLE VR RPGMYIG T D   LHHL  E 
Sbjct: 6   DTDAMNPEQSSGGKPQGDGPGYDSSSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFET 65

Query: 82  IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLH 138
           +DN++DE +AGY + I V++  +  ++V DNGRGIP +        P +S  EI++T LH
Sbjct: 66  VDNSVDEALAGYCDEILVTIHADESISVRDNGRGIPTDVKWDDKHDPKRSAAEIVMTELH 125

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL-------- 190
           AGGKFD ++Y++SGGLHGVG+S VNALS  L +T+ R       +F RG+P         
Sbjct: 126 AGGKFDQNSYKVSGGLHGVGVSCVNALSRWLKLTINRNGKTHFIEFERGVPKDRVIEEKD 185

Query: 191 ----SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
               SP++        RGT + F  D  IF     +    L K  +  ++L+  V+    
Sbjct: 186 GVAISPIKVLGDTTR-RGTEVHFLADDTIFSKV-EYHYETLSKRLRELSFLNNGVRIRLQ 243

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   E       E+F F GG+  +++     ++++   IF  + EK G    TVE A+
Sbjct: 244 DLRNNKE-------EDFAFAGGVSGFVEYINRAKNVLHPNIFHIRGEKDGV---TVEAAL 293

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W +    ++  + N I   +GGTH +GLR A+TR I KY E  +   K  +    DD+ 
Sbjct: 294 QWNDGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEENEIARKAKVDTSGDDMR 353

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                +LSV + EP+F+ QTK KLVS + +  VE+ +    + YL++ P +A  +   ++
Sbjct: 354 EGLTCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDVIARGLETYLLEKPNDAKIICSKIV 413

Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           E +  R   RK R++ R+   +  + LPGKLADC +     +ELFIVEGDSAGGSAKQ R
Sbjct: 414 EAARAREAARKARDMTRRKGVLDGIGLPGKLADCQERDPAKSELFIVEGDSAGGSAKQGR 473

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-----RSQYREEDLRYEK 537
           +R  QA+LPLRGK+LNV  A  +K+  ++Q+  L+  LG           ++ E LRY +
Sbjct: 474 DRKFQAILPLRGKVLNVEKARFDKLLASEQVATLITVLGTGIGSGLGSDDFKIEKLRYHR 533

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           VIIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++  PPL++I QG +  Y  D+   
Sbjct: 534 VIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKIKQGREERYLKDDFEL 593

Query: 598 QKIL 601
            + +
Sbjct: 594 DQYM 597



 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ +       +  +   R+KGLGEM A QL ET MD N R LL+V+I   +       
Sbjct: 766 FREAMRWLLADAEKGVSRQRYKGLGEMNAEQLWETTMDVNARRLLKVQIEDAI----AAD 821

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 822 QIFTTLMGDNVEPRRVFIEENALGAQNID 850


>gi|239904642|ref|YP_002951380.1| DNA gyrase subunit B [Desulfovibrio magneticus RS-1]
 gi|239794505|dbj|BAH73494.1| DNA gyrase subunit B [Desulfovibrio magneticus RS-1]
          Length = 804

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 232/580 (40%), Positives = 332/580 (57%), Gaps = 27/580 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            +       YDASSI +LEGL  VR RP MYIG TD + LHHL  EV+DN++DE +AGY 
Sbjct: 1   MSQDKTPQAYDASSITVLEGLSAVRKRPAMYIGSTDIRGLHHLVYEVVDNSIDESMAGYC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I +++  +  +TV DNGRGIPV+ HPK   +  +E+++T LHAGGKFDN  Y++SGGL
Sbjct: 61  DRIGITIHLDNSVTVSDNGRGIPVDIHPK-EGRPAVEVVMTVLHAGGKFDNDAYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS+ L VTV R      Q++ RG P++ L    +  N  GT I F PD +
Sbjct: 120 HGVGVSVVNALSEYLEVTVRRGGKKHHQRYERGAPVTALTVIGEAEN-TGTTIRFLPDEE 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF   + F+   L K  +  AYL+ +++  +  ++         E+  + F GGL  ++ 
Sbjct: 179 IFET-SQFNHETLAKRFEELAYLNRKLELDFRDER-------TNERVTYRFDGGLNRFVT 230

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
                  +I  EI  G+ E +G     V++A+ +      E+ ++ N I T EGGTH  G
Sbjct: 231 DLNAGEQVIH-EIIEGQGEIEGIM---VDFALQYNANYKEEVLTFANNIRTREGGTHLQG 286

Query: 334 LRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            + ALTR I  Y E     +        DD+      ++SV + +P+F GQTKTKL + +
Sbjct: 287 FKTALTRAINTYIEKADIPKKFKQKLTGDDVREGLTAVISVKLPQPQFEGQTKTKLGNSE 346

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
               V   + +  + +  +NP +A  ++E  ++ +  R   RK +E V RK A+    LP
Sbjct: 347 VAGLVAKIVFEAVNVHFEENPKDAKSIVEKAVDAARAREAARKAKELVRRKGALSDHSLP 406

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC       +ELFIVEGDSAGGSAKQ R+   QA+LPLRGKILNV    ++K+  N
Sbjct: 407 GKLADCQSKKPEESELFIVEGDSAGGSAKQGRDPRFQAILPLRGKILNVERTRTDKMLGN 466

Query: 511 QQIMDLVQALGCRTRSQYREE---------DLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
           ++I +L+ A+G        E           LRY K++IMTDADVDGAHI +LLLTFFY+
Sbjct: 467 KEIRNLITAIGPTPAMGDEESEEKEAENLARLRYHKIVIMTDADVDGAHIRTLLLTFFYR 526

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
               LI   ++++  PPL+R+ +G    +  D+E     L
Sbjct: 527 RYEKLILNGYVYIAQPPLYRVFKGDFERFIKDDEELSLFL 566



 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           ++           I I R+KGLGEM   QL ET M+  KR+ L+V I      + +    
Sbjct: 721 ELCRALMDDALKGINIQRYKGLGEMNPEQLWETTMNPEKRSFLQVRIED----MDEADSI 776

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            ++LMG K + R  FI+  A  + ++ 
Sbjct: 777 FSQLMGEKVENRRNFIERNALSVRELD 803


>gi|81251070|gb|ABB69874.1| DNA gyrase subunit B [Nitrosospira sp. GS832]
          Length = 555

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 226/558 (40%), Positives = 333/558 (59%), Gaps = 19/558 (3%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94
               +S  Y + SI+IL+GL+ VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ 
Sbjct: 10  QKNESSTAYGSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVLDNAIDEALAGHC 69

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVEN-HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           + I V +  +  LTV DNGRGIP    H     +S  EI++T LHAGGKFD+++Y++SGG
Sbjct: 70  DEISVIIHPDNSLTVQDNGRGIPTGIKHDDELKRSAAEIVMTELHAGGKFDDNSYKVSGG 129

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS+ L +T+ R   +   +F  G+P+ PL    K   +RGT + F    
Sbjct: 130 LHGVGVSVVNALSEWLRLTIRRNGQVHQIEFRMGVPVGPLVVTGKT-ERRGTEVHFLASK 188

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IFGD   +      K  +  ++L+  VK      +   E       E F F GG+++++
Sbjct: 189 EIFGDI-EYHYDIFAKRLRELSFLNNGVKIHLVDQRNAKE-------EIFAFVGGVRSFV 240

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +     +S++   IF    EK       VE ++ W +    ++  + N I   +GGTH +
Sbjct: 241 EYVNRTKSVLHPNIFYASGEKDNIM---VEVSMQWNDSYTEQVLCFTNNIPQKDGGTHLT 297

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           GLR A+TR +  Y E  +   K  I    DD+      + SV + EP+F+ QTK KLVS 
Sbjct: 298 GLRAAMTRTLNSYIEKNEVAKKAKIETSGDDMREGLSCVSSVKLFEPKFSSQTKEKLVSS 357

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRL 449
           + +  VE  +      +L++ P++A  +   +I+ +  R   RK RE+ R+   +  + L
Sbjct: 358 EVRPAVEEIVSQKLAEFLLEQPLDAKTICGKIIDAARAREAARKARELTRRKGVLDGMGL 417

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ +
Sbjct: 418 PGKLADCQEKNPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKLIS 477

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q+I  L+ ALG    + +Y  + LRY ++IIMTDADVDG+HI +LLLTFFY++M +LIE
Sbjct: 478 SQEIASLITALGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIE 537

Query: 569 QKHLFLISPPLFRITQGT 586
           + H+F+  PPL++I  G 
Sbjct: 538 RGHIFIAQPPLYKIKHGK 555


>gi|301629588|ref|XP_002943920.1| PREDICTED: DNA gyrase subunit B-like [Xenopus (Silurana)
           tropicalis]
          Length = 554

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 218/556 (39%), Positives = 334/556 (60%), Gaps = 19/556 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           ++  ++ YD++SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ +
Sbjct: 2   SEENTNTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCD 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I + +  +  +TV DNGRGIPV+ H K    S  E+I+T LHAGGKFD+++Y++SGGLH
Sbjct: 62  DISIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +     GT+I FRP  + 
Sbjct: 121 GVGVSVVNALSELLVLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SETTGTQIHFRPSDET 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++ 
Sbjct: 180 FKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G 
Sbjct: 232 LNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGF 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + 
Sbjct: 289 RSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEV 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPG 451
           +  VE  +   F  +L++NP EA  ++  +I+        R+ +    RK A+    LPG
Sbjct: 349 KTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQ 468

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF++++ +LIE+ 
Sbjct: 469 EVGTLITALGCGIGRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERG 528

Query: 571 HLFLISPPLFRITQGT 586
           ++++  PPL+++ +  
Sbjct: 529 YIYIAQPPLYKVKKDK 544


>gi|222823049|ref|YP_002574622.1| DNA gyrase, subunit B [Campylobacter lari RM2100]
 gi|222538270|gb|ACM63371.1| DNA gyrase, subunit B [Campylobacter lari RM2100]
          Length = 772

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 236/569 (41%), Positives = 330/569 (57%), Gaps = 20/569 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY+A +I++L+GLE VR RPGMYIG T+   LHH+  EV+DN++DE +AG+ + I V +
Sbjct: 5   QNYNAGNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVDNSIDEAMAGFCDTINVEI 64

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV  HP   N  TL ++LT LHAGGKFD  TY++SGGLHGVG+SV
Sbjct: 65  TTEGSCIVSDNGRGIPVGMHP-TENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 123

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS +L  TV R   I+ Q+FS G   S  E       K GT I F PD +IF     
Sbjct: 124 VNALSKKLVATVHRDGEIYRQEFSEGKVTSDFETIG-TSKKTGTIIEFWPDDQIFEITN- 181

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L K  +  AYL+ ++   +  ++       I + E F+F GG+  ++     N+ 
Sbjct: 182 FDYEILAKRFRELAYLNPKITINFKDNR-------IGKAESFHFEGGISQFVT--DLNKK 232

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340
              ++      +++      VE A+ + +   E   S+ N I T +GGTHE+G R+ LTR
Sbjct: 233 QALTKAIFFNVDEEDV---NVEVALLYNDSYSENLLSFVNNIKTPDGGTHEAGFRMGLTR 289

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  Y E      ++   I  +D+    + ++SV + EP+F GQTK KL S   +  V  
Sbjct: 290 VISNYIEANASAREKDSKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSSYVRPIVSK 349

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL-PGKLADCS 457
           A  +    Y  +NPIEA  ++   +  +  R   +K RE+ RK     +   PGKLADC 
Sbjct: 350 ASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKETSSVGTLPGKLADCQ 409

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +E+++VEGDSAGGSAKQ R R+ QA+LPLRGKILNV  A  +KI  ++QI +++
Sbjct: 410 SKDPSESEIYLVEGDSAGGSAKQGRERTFQAILPLRGKILNVEKARLDKILKSEQIQNMI 469

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A GC    ++  E LRY K+IIMTDADVDG+HI +LLLTFF++ M +L+   H++L  P
Sbjct: 470 TAFGCGIGDEFDIEKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQP 529

Query: 578 PLFRITQG-TKSVYAHDEEHKQKILEEFK 605
           PL+R  +G  K +Y  DE+     L E  
Sbjct: 530 PLYRYKKGQKKEIYLKDEKALNDYLIETG 558



 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 8/112 (7%)

Query: 578 PLFR----ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           PL+     I Q  K      ++   +IL++ +K+ K    I R+KGLGEM   QL ET M
Sbjct: 664 PLYEEANYIYQKIKDRDLKFDKDILEILDDVEKNAKKGAYIQRYKGLGEMNPDQLWETTM 723

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D N R LL++ I       +   ++ N  MG   + R ++IQ  A  +  + 
Sbjct: 724 DPNNRRLLKITIED----AQRADETFNLFMGDDVEPRREYIQAHAKDVKHLD 771


>gi|313500894|gb|ADR62260.1| ParE [Pseudomonas putida BIRD-1]
          Length = 606

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 229/624 (36%), Positives = 342/624 (54%), Gaps = 26/624 (4%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MY   TD    +HL  EVIDN++DE +AG+A  ++V L  +  L V D+GRG+PV+ HP+
Sbjct: 1   MY---TDTSRPNHLAQEVIDNSVDEALAGHARSVQVILHADHSLEVSDDGRGMPVDIHPE 57

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
               S +E+ILT LHAGGKF N  Y+ SGGLHGVGISVVNALS ++ V V R    +   
Sbjct: 58  -EGVSGVELILTKLHAGGKFSNKNYQFSGGLHGVGISVVNALSTQVRVRVKRDGNEYQMT 116

Query: 184 FSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
           F+ G   S LE    V +   GT + F PDPK F     F  +RL  + ++KA L   + 
Sbjct: 117 FADGFKASELEVVGSVGKRNTGTSVYFSPDPKYFDSP-KFSISRLKHVLKAKAVLCPGLL 175

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
             +             EK E+++  GL++YL   +     +  E F G        +  V
Sbjct: 176 VSFEDK-------ASGEKVEWHYEDGLRSYLVDSVNEFQRLPDEPFCGSLAGN---KEAV 225

Query: 303 EWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIIS 359
           +WA+ W  E  +    SY N I T +GGTH +GLR  L   ++++ E      R + +  
Sbjct: 226 DWALLWLPEGGDSIQESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNLLPRGVKLAP 285

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           +D+      +LS+ +++P+F+GQTK +L S +A   V   ++D F  +L  +P    +L 
Sbjct: 286 EDVWERITFVLSMKMQDPQFSGQTKERLSSREAAAFVSGVVKDAFSLWLNAHPELGMQLA 345

Query: 420 EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           E  I  +  RL+    ++V RK   +   LPGKLADC+       ELF+VEGDSAGGSAK
Sbjct: 346 ELAISNAGRRLK--ASKKVERKRITQGPALPGKLADCAGQDPMRAELFLVEGDSAGGSAK 403

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
           QAR++  QA+LPLRGKILN       ++  +Q++ ++  A+G    +      LRY K+ 
Sbjct: 404 QARDKEFQAILPLRGKILNTWEVDGGEVLASQEVHNIAVAIGVDPGATDL-AQLRYGKIC 462

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599
           I+ DAD DG HIA+LL   F Q    L+E  H+++  PPL+RI  G +  YA DE  +  
Sbjct: 463 ILADADSDGLHIATLLCALFVQHFRALVEAGHVYVAMPPLYRIDLGKEIYYALDEAERDG 522

Query: 600 ILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           IL+    +  +GK +++RFKGLGEM   QL+ET MD N R L+++ ++    + +     
Sbjct: 523 ILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDVEATCELMDKL 582

Query: 659 INKLMGTKADERFKFIQERASFID 682
              L   +A +R  +++ + +  +
Sbjct: 583 ---LAKKRAGDRKSWLETKGNLAE 603


>gi|77464924|ref|YP_354428.1| DNA gyrase subunit B [Rhodobacter sphaeroides 2.4.1]
 gi|126460793|ref|YP_001041907.1| DNA gyrase subunit B [Rhodobacter sphaeroides ATCC 17029]
 gi|77389342|gb|ABA80527.1| DNA gyrase subunit B [Rhodobacter sphaeroides 2.4.1]
 gi|126102457|gb|ABN75135.1| DNA gyrase subunit B [Rhodobacter sphaeroides ATCC 17029]
          Length = 811

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 223/573 (38%), Positives = 321/573 (56%), Gaps = 20/573 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
             + Y A SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DN +DE +AG+A  + 
Sbjct: 7   VPEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGHATAVT 66

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V +  +  ++V DNGRGIPV+ H      S  E+I+T LHAGGKFD ++Y++SGGLHGVG
Sbjct: 67  VKIHADSSVSVRDNGRGIPVDMHA-SEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVG 125

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD-----P 213
           +SVVNALSD L + + R       +F  G  +  L        ++GT + F        P
Sbjct: 126 VSVVNALSDWLELRIWRNGREHFARFENGETVEHLRVVRDAPGEKGTEVRFLASAKTNRP 185

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
                   +    L    +  A+L+  V+     ++        P   E ++ GG++ ++
Sbjct: 186 DGTFSNLDYSFKTLEARLRELAFLNSGVRILLEDER-----PAEPLHSELFYEGGVREFV 240

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +    ++S +  E      E+ G     VE A+ W +     +  + N I   +GGTH +
Sbjct: 241 RYLDRSKSPVMPEPIFITGERGGI---GVEVAMWWNDSYHETVLPFTNNIPQRDGGTHLA 297

Query: 333 GLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR I KYA+ +   R        DD       +LSV + +P+F+ QTK KLVS 
Sbjct: 298 GFRGALTRTITKYAQDSGIARREKVDFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 357

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRL 449
           + +  VEN + +    +  +NP  A  ++  ++E +  R   RK R    RKTA+    L
Sbjct: 358 EVRPAVENLVNEKLAEWFEENPAIAKSIVGKIVEAALAREAARKAREMTRRKTAMDVASL 417

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +ELFIVEGDSAGGSAKQ R R NQAVLPLRGKILNV  A  +++ +
Sbjct: 418 PGKLADCQEKDPALSELFIVEGDSAGGSAKQGRARKNQAVLPLRGKILNVERARFDRMLS 477

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           ++ +  L+ ALG    R ++    LRY K+IIMTDADVDGAHI +LLLTFF+++M  +IE
Sbjct: 478 SETVGTLITALGAGIGRDEFDIAKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPAIIE 537

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
              L++  PPL+++ +G   VY  D+      L
Sbjct: 538 GGFLYIAQPPLYKVARGKSEVYLKDQAALDDYL 570



 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 4/88 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L+     G+  + + R+KGLGEM   QL ET +D   RTLL+V+++     L +  D 
Sbjct: 728 ALLKAVLAEGEKGLSLQRYKGLGEMNPEQLWETTLDPEARTLLQVKVDD----LAEADDI 783

Query: 659 INKLMGTKADERFKFIQERASFIDDVGT 686
             KLMG   + R +FIQ+ A  ++++ T
Sbjct: 784 FTKLMGDVVEPRREFIQQNALNVENLDT 811


>gi|221640845|ref|YP_002527107.1| DNA gyrase subunit B [Rhodobacter sphaeroides KD131]
 gi|221161626|gb|ACM02606.1| DNA gyrase subunit B [Rhodobacter sphaeroides KD131]
          Length = 811

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 223/573 (38%), Positives = 321/573 (56%), Gaps = 20/573 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
             + Y A SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DN +DE +AG+A  + 
Sbjct: 7   VPEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGHATAVT 66

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V +  +  ++V DNGRGIPV+ H      S  E+I+T LHAGGKFD ++Y++SGGLHGVG
Sbjct: 67  VKIHADSSVSVRDNGRGIPVDMHA-SEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVG 125

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD-----P 213
           +SVVNALSD L + + R       +F  G  +  L        ++GT + F        P
Sbjct: 126 VSVVNALSDWLELRIWRNGREHFARFENGETVEHLRVVRDAPGEKGTEVRFLASAKTNRP 185

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
                   +    L    +  A+L+  V+     ++        P   E ++ GG++ ++
Sbjct: 186 DGTFSNLDYSFKTLEARLRELAFLNSGVRILLEDER-----PAEPLHSELFYEGGVREFV 240

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +    ++S +  E      E+ G     VE A+ W +     +  + N I   +GGTH +
Sbjct: 241 RYLDRSKSPVMPEPIFITGERGGI---GVEVAMWWNDSYHETVLPFTNNIPQRDGGTHLA 297

Query: 333 GLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR I KYA+ +   R        DD       +LSV + +P+F+ QTK KLVS 
Sbjct: 298 GFRGALTRTITKYAQDSGIARREKVDFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 357

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRL 449
           + +  VEN + +    +  +NP  A  ++  ++E +  R   RK R    RKTA+    L
Sbjct: 358 EVRPAVENLVNEKLAEWFEENPATAKSIVGKIVEAALAREAARKAREMTRRKTAMDVASL 417

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +ELFIVEGDSAGGSAKQ R R NQAVLPLRGKILNV  A  +++ +
Sbjct: 418 PGKLADCQEKDPALSELFIVEGDSAGGSAKQGRARKNQAVLPLRGKILNVERARFDRMLS 477

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           ++ +  L+ ALG    R ++    LRY K+IIMTDADVDGAHI +LLLTFF+++M  +IE
Sbjct: 478 SETVGTLITALGAGIGRDEFDIAKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPAIIE 537

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
              L++  PPL+++ +G   VY  D+      L
Sbjct: 538 GGFLYIAQPPLYKVARGKSEVYLKDQAALDDYL 570



 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 4/88 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L+     G+  + + R+KGLGEM   QL ET +D   RTLL+V+++     L +  D 
Sbjct: 728 ALLKAVLAEGEKGLSLQRYKGLGEMNPEQLWETTLDPEARTLLQVKVDD----LAEADDI 783

Query: 659 INKLMGTKADERFKFIQERASFIDDVGT 686
             KLMG   + R +FIQ+ A  ++++ T
Sbjct: 784 FTKLMGDVVEPRREFIQQNALNVENLDT 811


>gi|262193330|ref|YP_003264539.1| DNA gyrase subunit beta [Haliangium ochraceum DSM 14365]
 gi|262076677|gb|ACY12646.1| DNA gyrase, B subunit [Haliangium ochraceum DSM 14365]
          Length = 821

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 220/580 (37%), Positives = 347/580 (59%), Gaps = 20/580 (3%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEV 89
             P     + +  YDA SI +L+GLE VR RPGMYIG TD+   LHH+  EV+DNA+DE 
Sbjct: 2   ADPTVTPANDATEYDADSITVLKGLEAVRKRPGMYIGDTDDGSGLHHMVHEVVDNAVDEA 61

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
           +AGY + +++++  +  +TV DNGRGIPV  H K   +   E+++T LHAGGKF+ ++Y+
Sbjct: 62  LAGYCDRVDITIHSDNSITVEDNGRGIPVAVH-KDEGRPAAELVMTVLHAGGKFNQNSYK 120

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  L + + R+  ++ Q++ +GIP+S L       ++RGT+ITF
Sbjct: 121 VSGGLHGVGVSVVNALSRTLKLEIRREGKVYFQEYRQGIPVSDLRSTG-TTDRRGTKITF 179

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PDP++F     F    L +  +  +YL+  +    + ++E        +++ F + GG+
Sbjct: 180 LPDPEVFKQT-EFSFGALSQRFRELSYLNSGLTIAITDERES-------QQQVFCYEGGM 231

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
            +++     N++ + +E+     E++G    TV+ A+ W +    +I  + NTI   +GG
Sbjct: 232 ASFVADLNANKNPV-TEVVAFTDEREGV---TVDIAMQWNDSYAEQINCFTNTIKNKDGG 287

Query: 329 THESGLRVALTRGIKKYAELTQNKRAI---SIISDDLMISAVGILSVFIREPEFAGQTKT 385
           TH +G R  LTR +  YA   +  + +   ++  +DL    V ++SV + +P+F+ Q K 
Sbjct: 288 THLTGFRQGLTRTVNAYAAENKLLKELKGNNLSGEDLREGLVAVISVKVADPKFSNQPKD 347

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRKTAI 444
           KLVS +    V   + D    +   NP +A  +++  V+        R+ +  V RK A+
Sbjct: 348 KLVSSEVAGAVAAVVNDKLQSFFEHNPKDARSIIQKAVVAARARDAARKAREMVQRKGAL 407

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC +      ELFIVEG+SAGGSAKQ R+R  QA+LPL+GKILNV  A  
Sbjct: 408 EYTSLPGKLADCQERDPSKCELFIVEGESAGGSAKQGRDREFQAILPLKGKILNVERARM 467

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           +K+ ++Q+I+ L+ ALGC    +     LRY +++IMTDADVDG+HI +LLLTFF+++  
Sbjct: 468 DKMLSSQEIVTLITALGCGIGPEKDMGRLRYHRIVIMTDADVDGSHIRTLLLTFFFRQYP 527

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           ++IE  HL++  PPLF++ +G    Y  +E   +  + + 
Sbjct: 528 EIIENNHLYIAQPPLFKVKRGKSETYLKNEHSLEDYVLDL 567



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
             ++ E  +  G+  + I R+KGLGEM + QL +T M  ++RTLL+V I+    + ++  
Sbjct: 736 LDELAEAVEAVGRKGLSIQRYKGLGEMNSDQLWDTTMCPDQRTLLQVRID----AREEAA 791

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           D  + LMG   + R  FI+  A  + ++ 
Sbjct: 792 DVFSVLMGDLVEPRRHFIENNALNVRNLD 820


>gi|225851073|ref|YP_002731307.1| DNA gyrase, B subunit [Persephonella marina EX-H1]
 gi|225645970|gb|ACO04156.1| DNA gyrase, B subunit [Persephonella marina EX-H1]
          Length = 805

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 238/655 (36%), Positives = 351/655 (53%), Gaps = 47/655 (7%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
            +   ++ Y A +I ++EGL+ VR RP MYIG   E+ LHHL  E+IDNA+DE +AG+A 
Sbjct: 5   KDTVTTEEYRAEAIDVVEGLDHVRARPAMYIGDISERGLHHLVWELIDNAVDEAMAGFAK 64

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V +  +G +TV D+GRGIPV+ HPK      ++++ T L AGGKF    Y+ SGGLH
Sbjct: 65  NISVVIHEDGSVTVEDDGRGIPVDIHPK-TGLPAVQMVFTVLGAGGKFSKKAYQYSGGLH 123

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG SVVNALS  L V V R   ++ Q++  G P++PL+   +     GT++TF PD  I
Sbjct: 124 GVGASVVNALSRWLVVEVYRDGKVYRQEYEFGKPITPLKTVGETHK-TGTKVTFMPDDTI 182

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     F    + K  +  A+L   V+   S ++   +       EE+ +  G+K +++ 
Sbjct: 183 FET-VKFKFDTISKRCRELAFLLPGVRFFVSDERVDID-------EEYLYEEGIKDFVRV 234

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
               +  + S++   K E+    R  VE A  +       I S+ N + T EGGTH +G 
Sbjct: 235 LNAAKDPLFSDVIYVKGEQD---RIIVEVAFQYTRSYNEVIESFVNNVKTVEGGTHVAGF 291

Query: 335 RVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR + K     +  + +      +DL      ++SV + EP+F GQTK+KL + + 
Sbjct: 292 RGALTRAMNKTLSGMRLPKELKSGVKGEDLREGLTAVISVKVPEPQFEGQTKSKLGNQEV 351

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
           +R VEN + +    +  +N   A K+ E  IE +  R   +K +E++R+ + +    LPG
Sbjct: 352 KRVVENIVGEALLEFFDKNKDIAVKIAEKAIEAAIAREAAKKAKEISRRKSFLEDTSLPG 411

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS+      ELFIVEG+SAGGSAKQ R+R  QA+LPL+GKILNV  A  +KI +N 
Sbjct: 412 KLADCSETDPEICELFIVEGESAGGSAKQGRDRRTQAILPLKGKILNVEKARIDKILSND 471

Query: 512 QIMDLVQALGCRT-------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           +I  ++ A+G             +    LRY K+I+M DADVDGAHI +LLLT FY+   
Sbjct: 472 EIRSIINAIGTGIGLSTEEDDEGFDLSKLRYHKIILMADADVDGAHITTLLLTLFYRYFP 531

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL-----EEFKKHGKGKIEISRFKG 619
            +IE   L++  PPL+++ +G   +Y  D+E   KI+     +E    GK   +I   K 
Sbjct: 532 QIIENGFLYIAQPPLYKLKKGRSEIYVKDDEELAKIVIDFASDEITFEGKNLTKIQ-IKD 590

Query: 620 LGEMLASQLKETAMDAN----KRTLLRV--------EINKDLNSLKDTQDSINKL 662
           L    A + KE   D      KR   +V            DL      ++ + KL
Sbjct: 591 L----AKKAKEY-SDLKRSIYKRKDKKVIDAVIDLNITEDDLTDEDRVKEIVQKL 640



 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 8/108 (7%)

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PL    +  +           ++ +   + G   +EI R+KGLGEM   QL ET M+   
Sbjct: 705 PLTMNYKNKEV----TVTDLDQLYDVIWEAGIHGVEIQRYKGLGEMNPEQLWETTMNPKT 760

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           R L++V +           +  + LMG K + R +FI + A  + ++ 
Sbjct: 761 RRLMQVTLED----AALADEVFSILMGEKVEPRKEFIMKYAKEVRNLD 804


>gi|152991737|ref|YP_001357458.1| DNA gyrase subunit B [Sulfurovum sp. NBC37-1]
 gi|151423598|dbj|BAF71101.1| DNA gyrase subunit B [Sulfurovum sp. NBC37-1]
          Length = 773

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 235/565 (41%), Positives = 339/565 (60%), Gaps = 18/565 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y AS+I++L+GLE VR RPGMYIG T  K LHHL  EV+DN++DE +AGY + I+V+L 
Sbjct: 5   EYGASNIKVLKGLEAVRKRPGMYIGDTSTKGLHHLVYEVVDNSIDEAMAGYCDTIKVTLT 64

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
             G   + DNGRGIPV  HP     S   ++LT LHAGGKFD  TY++SGGLHGVG+SVV
Sbjct: 65  KAGSAIIEDNGRGIPVTEHP-TEKISAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVSVV 123

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS +LH+TV +   I  Q F +GIP  PL      R   GT+I F PD  IF +   F
Sbjct: 124 NALSKDLHLTVFKDGEIHEQSFQKGIPQEPLVATGPTRK-TGTKIEFWPDDSIFTEGVTF 182

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               LLK  +   YL+  +   +  +++  +       E+F+F GG+K +++       L
Sbjct: 183 QKEILLKRFRELCYLNPSITIEFKDERDGTK-------EKFHFEGGIKQFVEDMNTKPPL 235

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
            +++ F GK +        ++ A+ +C+ +  +  S+ N I T +GGTHE+G R  LTR 
Sbjct: 236 STAQFFQGKADD-----IEIDIALMYCDADSEKTLSFVNNIKTPDGGTHEAGFRAGLTRS 290

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +  Y        ++   I  DD     + I+SV + EP+F GQTK KL S   +  V+  
Sbjct: 291 MSSYISKNASAKEKGTKITGDDCKEGLIAIVSVRVPEPQFEGQTKGKLGSSYVRPLVQKF 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
             + F+ YL +NP+EA  ++  V+  +  R   ++ ++ V RK ++    LPGKLADC  
Sbjct: 351 FSEQFNKYLEENPVEAKAIMAQVLLAARGRDAAKRAKDLVKRKDSMSIGTLPGKLADCQS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  EKI  + +I +++ 
Sbjct: 411 KDPKISEIYLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKARLEKILKSDEIKNMIT 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALGC    ++ EE LRY K+IIMTDADVDG+HI +LL+TFF++ +  ++E+ +L+L  PP
Sbjct: 471 ALGCGIGDEFNEEKLRYHKIIIMTDADVDGSHIQTLLMTFFFRFLQPVVEKGYLYLAQPP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEE 603
           L+R  +G    Y  D++     L E
Sbjct: 531 LYRYKKGKNETYLKDDKALNDFLIE 555



 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 4/92 (4%)

Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
           ++    +  E +   K    I R+KGLGEM   QL ET M    R LL+V I+      +
Sbjct: 685 DKDLLALFAEVEASAKKGAYIQRYKGLGEMNPEQLWETTMTPENRRLLQVRIDD----SE 740

Query: 654 DTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +  ++    MG + + R  +I+  A  +  + 
Sbjct: 741 EASETFTLFMGDEVEPRRNYIESHAKDVKHLD 772


>gi|330430150|gb|AEC21484.1| DNA gyrase subunit B [Pusillimonas sp. T7-7]
          Length = 816

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 223/569 (39%), Positives = 337/569 (59%), Gaps = 16/569 (2%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           A+  Y A SI++L+GLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AGY + I 
Sbjct: 9   AAAGYGADSIKMLKGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEALAGYCDDIV 68

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFP-NKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           V++  +  ++V DNGRGIP + H      +S  EI++T LHAGGKFD+++Y++SGGLHGV
Sbjct: 69  VTIHADNSISVSDNGRGIPTDIHKDDEFGRSAAEIVMTELHAGGKFDHNSYKVSGGLHGV 128

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+S VNALS  L ++++R   +   +F RG  + PL     + +  GTR+ F  D +IF 
Sbjct: 129 GVSCVNALSQWLRLSISRNGQLHEMEFRRGERVEPLAVTGAI-DASGTRVQFLADAQIFE 187

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   +    L K  +  ++L+  VK     ++   E       E F F GG+K +++   
Sbjct: 188 NI-EYSYEILAKRLRELSFLNNGVKIRLIDERNDKE-------ENFAFLGGVKGFVEYIN 239

Query: 278 ENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
             ++++ + +F+  TE   G     V+ A+ W +     +  + N I   +GGTH +GLR
Sbjct: 240 RAKTVLHANVFSVSTESVVGDATIGVDVAMQWNDSYSETVLCFTNNIPQRDGGTHLTGLR 299

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            A+TR + KY    +   K  +    DD+      +LSV + EP+F+ QTK KLVS + +
Sbjct: 300 AAMTRVLNKYIADNELAKKAKVDTTGDDMREGLACVLSVKVPEPKFSSQTKDKLVSSEVR 359

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGK 452
             VE A+    + +L++NP +A  L   VIE +  R   RK      RK+ +    LPGK
Sbjct: 360 PAVEEAVARTLETWLLENPNDAKALCNKVIEAARARDAARKAREMTRRKSVLEGAGLPGK 419

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+LNV  A  +++  ++Q
Sbjct: 420 LADCQEKDPALCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARFDRLIASEQ 479

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  L+ ALG      +  + LRY ++IIMTDADVDGAHI +LLLT  Y++M +L+E+ H+
Sbjct: 480 ITTLITALGTSIGPDFNIDKLRYHRIIIMTDADVDGAHIRTLLLTLLYRQMPELVERGHI 539

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++  PPL+++  G +  Y  D+  + + +
Sbjct: 540 YIAQPPLYKVKVGREERYLKDDAEEAQFM 568



 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             ++ ++  +      I   R+KGLGEM   QL ET MD + R LLRV+I   +      
Sbjct: 730 DFREAMQFLRSEADRSISKQRYKGLGEMNPQQLWETTMDPSVRRLLRVQIEDAI----AA 785

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
            +    LMG   + R  FI+  A    ++ 
Sbjct: 786 DEIFTTLMGDNVEPRRAFIETHALQAGNID 815


>gi|325663387|ref|ZP_08151837.1| DNA gyrase subunit B [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325470841|gb|EGC74071.1| DNA gyrase subunit B [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 548

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 223/551 (40%), Positives = 332/551 (60%), Gaps = 15/551 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S  Y A  I+ILEGLE VR RPGMYIG T  + LHHL  E++DNA+DE + GY + I VS
Sbjct: 2   STEYGADQIQILEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNAVDEALGGYCDTIFVS 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TV+DNGRGIPV  + K      +E++ T LHAGGKF    Y++SGGLHGVG S
Sbjct: 62  INKDNSITVIDNGRGIPVGINHKA-GLPAVEVVFTVLHAGGKFGGGGYKVSGGLHGVGAS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDK 219
           VVNALS  L V +  +  I+ Q++ RG     L+   +   +K GT++TF PD +IF + 
Sbjct: 121 VVNALSVWLEVEIYNEGKIYKQRYERGKSAYQLKVVGECEADKTGTKVTFLPDAEIFEE- 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             FD   L +  +  A+L+  +K   + ++          ++ F++ GG+K ++Q   ++
Sbjct: 180 TEFDYNILKQRFREMAFLTKNLKIVLADER-----PEERIEKTFHYEGGIKEFVQYLNKS 234

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVAL 338
           ++ +  +I   + +K G     VE A+   +   + T  + N I T EGGTH  G R AL
Sbjct: 235 KTPLYEQIIYCEGQKDGV---AVEVAMQHNDSYTDNTYGFVNNITTPEGGTHVVGFRNAL 291

Query: 339 TRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           T+   +YA   +  +    ++  +D+      I+SV I++P+F GQTK KL + +A+  V
Sbjct: 292 TKTFNEYARKNKLLKDSEPNLSGEDIREGLTAIISVKIQDPQFEGQTKQKLGNSEARGAV 351

Query: 397 ENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           ++ L    + +L QNP  A  ++E  V+ +      R+ +    RK+A+  + LPGKLAD
Sbjct: 352 DSVLSTQLEIFLEQNPQVAKVVIEKSVLAQRAREAARKARDLTRRKSALEGMSLPGKLAD 411

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS+  A   E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV  A  +KI  N +I  
Sbjct: 412 CSEKDASKCEIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDKIYANAEIKA 471

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ A G      +    LRY K+IIMTDADVDGAHI++LLLTF Y+ M +LI+Q +++L 
Sbjct: 472 MITAFGTGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPELIKQGYVYLA 531

Query: 576 SPPLFRITQGT 586
            PPL+++ +  
Sbjct: 532 QPPLYKLEKTK 542


>gi|121607001|ref|YP_984330.1| DNA gyrase subunit B [Polaromonas naphthalenivorans CJ2]
 gi|120595970|gb|ABM39409.1| DNA gyrase subunit B [Polaromonas naphthalenivorans CJ2]
          Length = 874

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 228/603 (37%), Positives = 335/603 (55%), Gaps = 41/603 (6%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGY 93
                AS+ Y   SI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +AG+
Sbjct: 33  TNQAGASEAYGEGSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDESLAGH 92

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
            + I V++  +  ++VVDNGRGIP          P +S  EI LT LHAGGKF+ ++Y++
Sbjct: 93  CDDILVTIHTDNSVSVVDNGRGIPTGVKMDDKHEPKRSAAEIALTELHAGGKFNQNSYKV 152

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFS------------RGIPLSPLEKKEK 198
           SGGLHGVG+S VNALS  L +T+ R   +   +FS             G+ +SP++    
Sbjct: 153 SGGLHGVGVSCVNALSKMLRLTIRRDGKVHVMEFSRGFVQNRIVEMANGVEVSPMKVMGP 212

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +KRGT + F PD  IF +   F    L K  +  ++L+  V+     ++   E     
Sbjct: 213 T-DKRGTEVHFLPDTDIFKENNDFHYEILSKRLRELSFLNNGVRIRLKDERSGKEDD--- 268

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK--KGTHRGTVEWAIAWCEENPEI- 315
               F   GG+K +++   + ++++   +F    ++         VE A+ W     E  
Sbjct: 269 ----FSGTGGVKGFVEFINKGKTVLHPNVFNAMGDRQSDQGTNIGVEVAMQWNSGYSEQV 324

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +GLR A+TR I KY + T+   K  + +  DD+      +LSV 
Sbjct: 325 LCFTNNIPQRDGGTHLTGLRAAMTRVINKYIDDTELAKKAKVEVTGDDMREGLCCVLSVK 384

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + EP+F+ QTK KLVS + +  VE+ +    + YL + P +A  ++  +IE +  R   R
Sbjct: 385 VPEPKFSSQTKDKLVSSEVRGPVEDIVSRLLNDYLQERPNDAKIIVGKIIEAARAREAAR 444

Query: 434 KQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           K R++ R+   +  + LPGKLADC +      E+++VEGDSAGGSAKQ R+R  QA+LPL
Sbjct: 445 KARDMTRRKGVLDGMGLPGKLADCQEKDPAMCEIYLVEGDSAGGSAKQGRDRKFQAILPL 504

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRTR-----------SQYREEDLRYEKVIIM 541
           +GKILNV  A  EK+  + +I+ L+ ALG                 +    LRY ++IIM
Sbjct: 505 KGKILNVEKARYEKLLTSNEILILITALGTGIGKGGGVGGTPGADDFNVAKLRYHRIIIM 564

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           TDADVDGAHI +LLLTFFY++M +LIE+ H+++  PPL+++  G +  Y  D       L
Sbjct: 565 TDADVDGAHIRTLLLTFFYRQMPELIERGHIYIAQPPLYKVKAGKEEQYLKDTAALDGFL 624

Query: 602 EEF 604
              
Sbjct: 625 LRI 627



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 7/87 (8%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           + L    +HG  +    R+KGLGEM  +QL ET +D   R LL+V+I+  +    +    
Sbjct: 794 RWLIGQAEHGTAR---QRYKGLGEMNPAQLWETTLDPKVRRLLKVQIDDAI----EADRV 846

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
              LMG + + R +FI++ A    ++ 
Sbjct: 847 FTMLMGDEVEPRREFIEQNALRAGNID 873


>gi|157803574|ref|YP_001492123.1| DNA gyrase subunit B [Rickettsia canadensis str. McKiel]
 gi|157784837|gb|ABV73338.1| DNA gyrase subunit B [Rickettsia canadensis str. McKiel]
          Length = 808

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 229/566 (40%), Positives = 332/566 (58%), Gaps = 15/566 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            +Y A SI++L+GLE VR RPGMYIG       LHH+  EV+DNA+DE +AGY +L++V 
Sbjct: 11  SSYGADSIKVLKGLEAVRKRPGMYIGDVGNGSGLHHMIYEVVDNAIDESLAGYCDLVQVI 70

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L+ NG +TV DNGRGIPVE H +    S  E+I+T LHAGGKFD ++Y++SGGLHGVG+S
Sbjct: 71  LNKNGSVTVSDNGRGIPVEIHEE-EGISAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVS 129

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ L + + R N  +  +F+ GI  +PL   ++  +K+GT +TF P  + F +  
Sbjct: 130 VVNALSEWLELRIWRNNKEYLIRFNNGITEAPLAVVKENIDKKGTEVTFFPSVETFTNI- 188

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   +    +  A+L+  +K     ++     +   ++ EFY+ GG++ Y++     +
Sbjct: 189 EFDFGTIEHRLRELAFLNSGIKILLVDNR-----FEEAKEAEFYYTGGIEAYVKYIDRAK 243

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALT 339
             I                  +E A+ W +     I  + N I   +GGTH S  + A+T
Sbjct: 244 HAIHP--CIIVNVDNAESGINLELAMHWNDSYYENILCFTNNIRQRDGGTHLSAFKSAIT 301

Query: 340 RGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y + T   + +      +D       +LSV + +P+F+ QTK KLVS + +  VE
Sbjct: 302 RVITSYLDTTGLNKKVKNDFSGEDTREGLCCVLSVKVPDPKFSSQTKDKLVSSEVRPVVE 361

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADC 456
           N +      +  ++P EA  ++  ++E +  R   RK RE   RK+A+    LPGKLADC
Sbjct: 362 NIVYTKVLEWFEEHPAEARAIISKIMEAANAREAARKAREFTRRKSALEISNLPGKLADC 421

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
                  +ELFIVEGDSAGG+AKQ R+   QA+LPLRGKILNV  A  +K+  + QI  L
Sbjct: 422 HAKDPAISELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGSDQIGTL 481

Query: 517 VQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           + ALG    +Q    E LRY KVIIMTDADVDG+HI +LLLTFFY+ M +LI + +L++ 
Sbjct: 482 ITALGTGVDNQEFSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRNMPELINKGYLYIA 541

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKIL 601
            PPL+++ +G    Y  +E+  Q  L
Sbjct: 542 QPPLYKVKKGAAEFYLKNEQALQDYL 567



 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 56/136 (41%), Gaps = 21/136 (15%)

Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK 609
            I+ L LT F      L              ++   ++             L      GK
Sbjct: 693 QISKLALTIFDIFCKQL--------------KLIVKSQECDILTPSQL---LNTIIACGK 735

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669
             I I RFKGLGEM ++QL ET +D  KRTLL+V +      + + +   + LMG   + 
Sbjct: 736 KGINIQRFKGLGEMNSNQLWETTLDPEKRTLLQVRV----AEVDEAEGIFSTLMGDVVEP 791

Query: 670 RFKFIQERASFIDDVG 685
           R  FIQ  A  + ++ 
Sbjct: 792 RRLFIQANALNVVNLD 807


>gi|254251050|ref|ZP_04944368.1| Type IIA topoisomerase [Burkholderia dolosa AUO158]
 gi|124893659|gb|EAY67539.1| Type IIA topoisomerase [Burkholderia dolosa AUO158]
          Length = 834

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 225/608 (37%), Positives = 326/608 (53%), Gaps = 34/608 (5%)

Query: 23  LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEV 81
             ++ +I  S    +Q  + +Y ASSI+ILEGLE VR RPGMYIG T D   LHHL  EV
Sbjct: 2   ASQNRKISMSEQHNSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEV 61

Query: 82  IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE--NHPKFP-NKSTLEIILTTLH 138
           +DN++DE +AGY N I V++  +  ++VVDNGRGIP +   + K    +S  EI++T LH
Sbjct: 62  LDNSIDEALAGYCNDIHVTIHADNSISVVDNGRGIPTDVKMNDKHEPKRSAAEIVMTELH 121

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP--------- 189
           AGGKFD ++Y++SGGLHGVG+S VNALS  L +TV R       +F RG+          
Sbjct: 122 AGGKFDQNSYKVSGGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQNRILETVD 181

Query: 190 ---LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
              +SP++      N RGT + F  DP IFG    +    L K  +  ++L+  V+   +
Sbjct: 182 GEEVSPMQIIGDTEN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLT 239

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   E         F F GG+K +++   + +S +   IF    EK G     VE A+
Sbjct: 240 DLRSGKEDD-------FAFAGGVKGFVEYINKTKSNLHPTIFHVIGEKDGV---GVEVAM 289

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W +     +  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+ 
Sbjct: 290 QWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETTGDDMR 349

Query: 364 ISAVGILSVFIREPEFA-GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA-TKLLEW 421
                +LSV +   E      +T        R     +    + +L++      +     
Sbjct: 350 EGLSCVLSVKVPGAEVQLADQRTSSCRPKCARRSRKVVAKALEEFLLETRTTRGSSAGTL 409

Query: 422 VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
                     RR+ R + RK  +  + LPGKLADC +      E++IVEGDSAGGSAKQ 
Sbjct: 410 WWIPRARDAARRRARSLRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQG 469

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVII 540
           R+R  QA+LPLRGK+LNV  A  +K+ +++QI+ LV ALGC         + LRY ++II
Sbjct: 470 RDRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIII 529

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKI 600
           MTDADVDGAHI +LLLTFFY++M +++E+ ++++  PPL++I  G    Y  D+      
Sbjct: 530 MTDADVDGAHIRTLLLTFFYRQMPEMVERGYVYIAQPPLYKIKAGKDERYLKDDAELNAH 589

Query: 601 LEEFKKHG 608
           +      G
Sbjct: 590 MLRLALQG 597



 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G +S+   D    +  ++      +  +   R+KGLGEM   QL ET MD N R LL
Sbjct: 737 IKRGERSMAVKD---FKSAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMDPNVRRLL 793

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           RV+I   +            LMG + + R  FI+  A    ++ 
Sbjct: 794 RVQIEDAI----AADGIFTTLMGDEVEPRRAFIESNALRAGNID 833


>gi|114797774|ref|YP_759281.1| DNA gyrase subunit B [Hyphomonas neptunium ATCC 15444]
 gi|114737948|gb|ABI76073.1| DNA gyrase, B subunit [Hyphomonas neptunium ATCC 15444]
          Length = 814

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 236/575 (41%), Positives = 334/575 (58%), Gaps = 23/575 (4%)

Query: 48  SIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGF 106
           SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+A+ + V+L  +G 
Sbjct: 22  SIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMIYEVVDNSIDEALAGHADHVTVTLFPDGS 81

Query: 107 LTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALS 166
             V DNGRGIPV  HP     S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALS
Sbjct: 82  AEVTDNGRGIPVGLHP-SEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALS 140

Query: 167 DELHVTVARQNTIFSQKFSRG-------IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           D L +T+ R+      +F  G       +   P  K+E  +   GT + F      F   
Sbjct: 141 DWLELTIHREGKEHFVRFVEGGRVEAPLVTRGPSPKRENGKAYTGTALRFLASTSTFT-M 199

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             +D   L    +  A+L+  VK  +  ++E       P +    + GG+K ++Q     
Sbjct: 200 TDYDRKTLEHRLRELAFLNSGVKIIFRDEREA-----EPYEIILEYEGGVKAFVQHIDRQ 254

Query: 280 RSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
           +S +  E      EK G      +EW   + E    +  + N I   +GGTH +G R AL
Sbjct: 255 KSSLIGEPIYVIGEKDGITVEAALEWTDTYHES---VLCFTNNIPQRDGGTHLAGFRGAL 311

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR I KYA  T    K  + I  DD       +LSV + +P+F+ QTK KLVS + +  V
Sbjct: 312 TRIINKYANETGAAKKSKVEISGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVV 371

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
           E+ + +    +  +NP +A  ++E V+E +  R   RK RE   RK+A+    LPGKLAD
Sbjct: 372 ESLINEKLGEWFEENPKKAQIIMEKVVEAAAAREAARKARELTRRKSALDITSLPGKLAD 431

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +E+FIVEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  +K+  + Q+  
Sbjct: 432 CQEKDPAKSEIFIVEGDSAGGSAKQGRSRDNQAILPLRGKILNVERARFDKMLGSDQVGT 491

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ ALG    R ++    LRY K+IIMTDADVDGAHI +LLLTFFY++M ++IE  +L++
Sbjct: 492 LIMALGAGIGRDEFNIAKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPEIIENGYLYI 551

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK 609
             PPL+++T+G    Y  D+   +  L E    G+
Sbjct: 552 AQPPLYKVTRGRSERYVKDDAELESYLIEEGTTGE 586



 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 4/84 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L    + G+  ++I R+KGLGEM ASQL ET +DAN RTLL+V++        +  + 
Sbjct: 732 TLLGAVLESGRKGLKIQRYKGLGEMNASQLWETTLDANARTLLQVKVEH----ADEADEL 787

Query: 659 INKLMGTKADERFKFIQERASFID 682
             KLMG   + R +FI+E A   +
Sbjct: 788 FTKLMGDVVEPRREFIEEFALEAE 811


>gi|195953991|ref|YP_002122281.1| DNA gyrase, B subunit [Hydrogenobaculum sp. Y04AAS1]
 gi|195933603|gb|ACG58303.1| DNA gyrase, B subunit [Hydrogenobaculum sp. Y04AAS1]
          Length = 786

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 223/564 (39%), Positives = 324/564 (57%), Gaps = 17/564 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y   +I+++ GLE VR+RP MYIG   E+ LHHL  E++DN++DE +AGYA  I V +
Sbjct: 2   QEYGVDAIKVVTGLEHVRLRPSMYIGDISERGLHHLIWEIVDNSVDEAMAGYATHIRVHI 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  +TV DNGRGIPV  H K   K  +E++LT L AGGKFD   Y+ SGGLHGVG SV
Sbjct: 62  HQDDSITVEDNGRGIPVYIH-KDVGKPAVEVVLTVLGAGGKFDKKAYQYSGGLHGVGASV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+ L V V R   I+ Q++ RG+P + L+        RGT+ITF+PD +IF     
Sbjct: 121 VNALSEWLIVEVYRDGKIYRQEYERGVPKTELQVIGDTTK-RGTKITFKPDAEIFETT-K 178

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
                + K  +  AYL+  V      D+         +   + F  G+    +   E + 
Sbjct: 179 IKFDIVEKRIRELAYLNKNVTFEIIDDRL-------DKHLVYKFERGIIELAEYLAEGKE 231

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            + +++   ++ K GT    VE A  + ++    + S+ N I T EGGTH +G R AL++
Sbjct: 232 PLFNDVIYIESGKDGTL---VEIAFKYTKDYKESLESFVNNIKTIEGGTHVTGFRSALSK 288

Query: 341 GIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            + K ++  +  + +      +DL    V ++S  + EP+F GQTKTKL + + +  VE+
Sbjct: 289 VVSKLSQNIKISKELKEMFTGEDLREGLVAVVSCKVPEPQFEGQTKTKLGNQETKNIVES 348

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
              +    Y  ++      ++E  IE +  R   +K ++ V RK+ +    LPGKLADCS
Sbjct: 349 ITVEFLTDYFEKHQDILKLIVEKAIEAALAREAAKKAKDLVRRKSFLEDTSLPGKLADCS 408

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           +      E+FIVEG+SAGGSAKQ R+R  QA+LPL+GKILNV  A  +K  +N++I  ++
Sbjct: 409 EKDPSKCEIFIVEGESAGGSAKQGRDRRFQAILPLKGKILNVEKARIDKALSNEEIRAII 468

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALGC          LRY K IIMTDADVDG+HI +LLLTFFY+ M  LIE  H+++  P
Sbjct: 469 SALGCNIGEDVDLSALRYHKTIIMTDADVDGSHIRTLLLTFFYRFMTKLIENGHVYIAQP 528

Query: 578 PLFRITQGTKSVYAHDEEHKQKIL 601
           PL+++  G K  Y  D++  +K L
Sbjct: 529 PLYKVKIGKKETYIKDDKELEKFL 552



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 4/88 (4%)

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           + + ++     K  IEI R+KGLGEM   QL ET M+ N R LLRV +        +   
Sbjct: 702 EDLYQDIINFVKDGIEIQRYKGLGEMNPEQLWETTMNPNTRRLLRVSLED----AAEADR 757

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
             + LMG   + R +FI+  A  + ++ 
Sbjct: 758 IFSILMGENVEPRREFIETYAKEVRNLD 785


>gi|326314826|ref|YP_004232498.1| DNA gyrase subunit B [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323371662|gb|ADX43931.1| DNA gyrase, B subunit [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 877

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 236/630 (37%), Positives = 345/630 (54%), Gaps = 47/630 (7%)

Query: 11  TLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT- 69
           TLP  +  + +   +S   P S      + SD Y   +I+ILEGLE VR RPGMYIG T 
Sbjct: 6   TLPEPTLPTGDSQAQSVAAPASVPAQAAAPSDGYGEGAIQILEGLEAVRKRPGMYIGDTS 65

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPN 126
           D   LHHL  EV+DN++DE +AG+ + I V++  +  ++VVDNGRGIP          P 
Sbjct: 66  DGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHSDNSISVVDNGRGIPTGVKMDDKHEPK 125

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV R   +   +FS+
Sbjct: 126 RSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKMLRLTVRRDGKVHLLEFSQ 185

Query: 187 G------------IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           G            + +SP+    +  +KRGT + F PD +IF +   F    L K  +  
Sbjct: 186 GFVQNRILETVNGVEVSPMRVTGET-DKRGTEVHFLPDTEIFKENNDFHYEILAKRLREL 244

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V+     ++   E         F   GG+  ++Q    ++ ++    F     +
Sbjct: 245 SFLNNGVRIRLKDERTGKEDD-------FSGAGGVMGFVQFINASKKVLHPNAFHATGSR 297

Query: 295 KGTH-------RGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYA 346
                         VE A+ W +  N  +  + N I   +GGTH +GLR A+TR I KY 
Sbjct: 298 PAETYGGIPGTEIGVEVAMQWNDGFNESVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYI 357

Query: 347 ELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF 404
           E  +   K  + +  DD+      +LSV + EP+F+ QTK KLVS + +  VE+ +    
Sbjct: 358 EQNEMAKKAKVEVSGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVAKAL 417

Query: 405 DHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHG 463
             YL + P +A  L   ++E +  R   RK RE+ R+   +  + LPGKLADC +     
Sbjct: 418 TDYLEERPNDAKILCGKIVEAARAREAARKAREMTRRKGVLDGMGLPGKLADCQEKDPAM 477

Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523
           +E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  EK+  + +I+ L+ ALG  
Sbjct: 478 SEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARYEKLLTSNEILTLITALGTG 537

Query: 524 T------------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
                           +  + LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ H
Sbjct: 538 IGKASADGTGKSGADDFNVDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGH 597

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +++  PPL+++  G + +Y  D       L
Sbjct: 598 IYIAQPPLYKVKNGKEELYLKDGPALDTFL 627



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             ++ +    K  +      R+KGLGEM   QL ET MD   R LLRV+I   +    + 
Sbjct: 791 DFRQAMAWLIKEAERTTSRQRYKGLGEMNPEQLWETTMDPEVRRLLRVQIEDAI----EA 846

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
                 LMG + + R  FI+  A    ++ 
Sbjct: 847 DRVFTMLMGDEVEPRRDFIETNALRAGNID 876


>gi|32266626|ref|NP_860658.1| DNA gyrase subunit B [Helicobacter hepaticus ATCC 51449]
 gi|32262677|gb|AAP77724.1| DNA gyrase (topoisomerase II) [Helicobacter hepaticus ATCC 51449]
          Length = 772

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 229/565 (40%), Positives = 336/565 (59%), Gaps = 17/565 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y AS+I++L+GLE VR RPGMYIG T+   LHH+  EV+DN++DE +AGY + I ++L
Sbjct: 4   KEYQASNIKVLKGLEAVRKRPGMYIGDTNSGGLHHMIYEVVDNSIDEAMAGYCDKINITL 63

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   + DNGRGIPV+ HP   N     ++LTTLHAGGKFD  TY++SGGLHGVG+SV
Sbjct: 64  TMEGSAIIEDNGRGIPVDIHP-TENLPAATLVLTTLHAGGKFDQDTYKVSGGLHGVGVSV 122

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  L +T+ +   I+ Q+F++GIP S LE     +   GT I F PD ++      
Sbjct: 123 VNALSKRLIMTIKKNGHIYRQEFAKGIPQSDLEVIGNTKKH-GTTIEFFPDGEVMEVL-E 180

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L++  +  AYL+  +   +  ++   E       E ++F GGLK ++Q   + + 
Sbjct: 181 FDKDILVRRFKEMAYLNHNITIQFKDERTQFE-------EIYHFEGGLKQFIQDVNK-KP 232

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
           LISS I    TE++      + +   +   + ++ S+ N I T +GGTHE+G R  L+R 
Sbjct: 233 LISSIISFEATEQESEIEIALAYNEGY---DEKLLSFVNNIRTPDGGTHEAGFRAGLSRA 289

Query: 342 IKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  Y E   N  ++   +  +D+    V I+S  I +P+F GQTK KL S   +  V+  
Sbjct: 290 IMNYIEANANAREKDAKVSGEDVREGLVAIISTKIIDPQFEGQTKGKLGSSFVKPIVQKL 349

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
             +    +  +NP EA  +++  I  +  R   +K R+   +K +     LPGKLADC  
Sbjct: 350 TYEKLSKFFEENPNEAKAIMQKAIMAARGREAAKKARDLTRKKESFSVGTLPGKLADCQS 409

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+++VEGDSAGGSAKQ R+R+ QA+LPLRGKILNV  +  +KI  + +I +++ 
Sbjct: 410 KDPSVSEIYLVEGDSAGGSAKQGRDRTFQAILPLRGKILNVEKSRLDKILKSDEIKNMIT 469

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A GC    ++  E LRY K+IIMTDADVDG+HI +LL+TFFY+ +  L+E  H+++  PP
Sbjct: 470 AFGCGIGEEFNIEKLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLKPLVENGHIYIAQPP 529

Query: 579 LFRITQGTKSVYAHDEEHKQKILEE 603
           L+R  +G K +Y  DE    + L E
Sbjct: 530 LYRYKKGKKEIYLKDERALSEYLIE 554



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 4/95 (4%)

Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
             ++E     LE  ++  K    I R+KGLGEM   QL ET M    RTLLRV+I+ D+N
Sbjct: 681 FLNDEDMIVFLERIEESAKKDAYIQRYKGLGEMNPDQLWETTMIPQNRTLLRVKIDNDIN 740

Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
               T +     MG + + R  +IQE A  +  + 
Sbjct: 741 ----TDEIFTLFMGDEVEPRRAYIQEHAKDVKHLD 771


>gi|297621239|ref|YP_003709376.1| DNA gyrase subunit B [Waddlia chondrophila WSU 86-1044]
 gi|297376540|gb|ADI38370.1| DNA gyrase subunit B [Waddlia chondrophila WSU 86-1044]
          Length = 822

 Score =  485 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 224/576 (38%), Positives = 326/576 (56%), Gaps = 18/576 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S  Y+ASSI +LEGL+ VR RPGMY+G T    LH L  EV+DN++DE +AG+ + I V 
Sbjct: 2   SKEYNASSITVLEGLQAVRERPGMYVGDTSTSGLHQLVYEVVDNSIDEAMAGHCSEIYVI 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNK-----STLEIILTTLHAGGKFDNSTYEISGGLH 155
           ++ +G +T+ DNGRGIP++ H K   K     S LE+++TTLHAGGKFD  TY++SGGLH
Sbjct: 62  INADGSITLEDNGRGIPIQKHEKESQKQGREVSALEVVMTTLHAGGKFDKETYKVSGGLH 121

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+S V ALS ++ V V +   ++   FS+G  +  L         +GTRITF PD + 
Sbjct: 122 GVGVSCVCALSSKMIVNVYKDGRVWEMHFSQGKVIKSLADMGATSK-KGTRITFWPD-ET 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
                 FD   L K  +  A+L+  +   +  ++   +         F + GGLK+++  
Sbjct: 180 VMTVTEFDYDILAKRLRELAFLNRGISIFFQDERHDDKDD-----VNFRYDGGLKSFVSY 234

Query: 276 KLENRSLISSEIFTGKTEKKGTHR-GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
             EN++ I  E       ++G      +E A+ W +     I SY N I T  GGTH +G
Sbjct: 235 LNENKNAIFPEPIYFYGTREGDDGPIDIEVAMQWNDGYNETIFSYVNNISTAHGGTHLTG 294

Query: 334 LRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
              ALTR +  Y +     R+    I  +D+      ++S  +  P+F GQTK +L + D
Sbjct: 295 FSTALTRVLNNYIKTHNLLRSDKIGISGEDMREGLTAVISAKVANPQFEGQTKQRLGNSD 354

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN-RKTAIRKLRLP 450
               V+    +    +L ++P  A  + +  I  ++ R   RK RE+  RK+A+   RLP
Sbjct: 355 VGSVVQQITGEELGIFLDEHPSIAKTISDKAILAAKAREAARKARELTLRKSALDSARLP 414

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL DC +      EL+IVEGDSAGGSAK  R+R  QA+LP+RGKILNV  A  EK+  N
Sbjct: 415 GKLTDCQERNPELCELYIVEGDSAGGSAKSGRDRRFQAILPIRGKILNVEKARLEKVLQN 474

Query: 511 QQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
            ++  ++ ALGC   ++  +   LRY K+IIMTDADVDG+HI +LLLTFFY+ M  L+E 
Sbjct: 475 TEVGTIISALGCGIGTEGFDLGKLRYHKIIIMTDADVDGSHIRTLLLTFFYRHMPALVEN 534

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605
            H+++  PPL+ +T+     Y H E+   + L +  
Sbjct: 535 NHIYIAQPPLYLVTRKKSKQYIHSEKEMDEYLLKLG 570



 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            +++++  + +G+  IEI R+KGLGEM A QL ET MD  KRTL++V +   +       
Sbjct: 737 LREVIDLIRDNGRKGIEIQRYKGLGEMNADQLWETTMDPEKRTLIKVTLPDAV----AAD 792

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG +   R  FI++ A  + D+ 
Sbjct: 793 HMFTMLMGDEVPPRRAFIEQHALSVKDLD 821


>gi|317486106|ref|ZP_07944953.1| DNA gyrase subunit B [Bilophila wadsworthia 3_1_6]
 gi|316922629|gb|EFV43868.1| DNA gyrase subunit B [Bilophila wadsworthia 3_1_6]
          Length = 795

 Score =  485 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 228/571 (39%), Positives = 326/571 (57%), Gaps = 21/571 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            + ++ Y A SI ILEGL+ VR RP MYIG TD + LHHL  EV+DN++DE +AGY   I
Sbjct: 2   TANANAYTADSITILEGLQAVRKRPAMYIGSTDYRGLHHLVYEVVDNSIDEAMAGYCTRI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           EV L  +  +TV DNGRGIPV+ HPK      +++++T LHAGGKFDNS Y++SGGLHGV
Sbjct: 62  EVVLHMDNSVTVRDNGRGIPVDIHPK-EKVPAVQVVMTKLHAGGKFDNSAYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+S VNALS+ L VTV R    + Q +SRG+P   L+   +  +  GT + F+PD  IF 
Sbjct: 121 GVSCVNALSERLEVTVRRDGKRWKQVYSRGVPQEELQYIGE-SDSHGTTVRFKPDETIFE 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F    L K  +  AYL+  ++     ++         E   F+  GG+  +++   
Sbjct: 180 T-TEFSYDTLKKRFEELAYLNKGLQIECRDER-------TSEVHLFHAEGGIHQFVKDLN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
                I + +  G+    G    +VE+AI +       + ++ N I T EGGTH +G + 
Sbjct: 232 SGEVGIHAIVD-GEGVADGV---SVEFAIQYNAGYKENMYTFANNIRTKEGGTHLAGFKT 287

Query: 337 ALTRGIKKY----AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           ALTR I  Y     +LT+  +  ++  DD+      +LSV + +P+F GQTKTKL + + 
Sbjct: 288 ALTRAINNYIKSQPDLTKKMKGQALSGDDVREGLTAVLSVKLPQPQFEGQTKTKLGNSEV 347

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
              V   +    D Y  +NP +A  +++  ++ S  R   R+ +E V RK A+    LPG
Sbjct: 348 AGIVGGVVYGKLDTYFQENPKDARLIIDKAVDASRARDAARRAKELVRRKGALSDNALPG 407

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC       +ELFIVEGDSAGGSAKQ RN + QA+LPLRGKILN      +K+  N+
Sbjct: 408 KLADCQSKDPADSELFIVEGDSAGGSAKQGRNPNTQAILPLRGKILNTERTRFDKMLANK 467

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ A+G          + LRY K++IMTDADVDGAHI +LLLTFF++    LI++ 
Sbjct: 468 EVKALITAMGAGIGEEDTDYDKLRYHKIVIMTDADVDGAHIRTLLLTFFFRNYAGLIDRG 527

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +L++  PPL+R        +  D+      L
Sbjct: 528 YLYIAQPPLYRAHNSRMEKFIKDDYELNAFL 558



 Score =  136 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 8/103 (7%)

Query: 584 QGTKSVYAHDE-EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLR 642
           +  +  YA  +      +  E     +  + I R+KGLGEM   QL  T M+   RTLLR
Sbjct: 699 RNKEQEYAASDIFDLHALTLE---EARKGLNIQRYKGLGEMNPEQLWVTTMNPENRTLLR 755

Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           V +       +   D+  +LMG + + R +FI+  A  + D+ 
Sbjct: 756 VTVED----AEAASDTFEQLMGDRVEPRREFIERNALTVRDLD 794


>gi|78045560|ref|YP_361735.1| DNA gyrase subunit B [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|78033990|emb|CAJ21635.1| DNA gyrase subunit B [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 832

 Score =  485 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 230/590 (38%), Positives = 341/590 (57%), Gaps = 18/590 (3%)

Query: 25  KSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVID 83
            +G           + +  YD+S I +L GLE VR RPGMYIG   D   LHH+  EV+D
Sbjct: 14  ANGTRMTDEQNIPPTPNGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVD 73

Query: 84  NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143
           N++DE +AG+A+ I V +  +G + V DNGRG+PV+ H K    S  E+ILT LHAGGKF
Sbjct: 74  NSVDEALAGHADDIVVKILADGSVAVSDNGRGVPVDIH-KEEGVSAAEVILTVLHAGGKF 132

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS+ L + + R    + Q+++ G P  PL++ E     R
Sbjct: 133 DDNSYKVSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQLEASTK-R 191

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F+P   IF D   F    L +  +  ++L+  VK     ++          +++F
Sbjct: 192 GTTLRFKPSVAIFSDV-EFHYDILARRLRELSFLNSGVKITLIDERG------EGRRDDF 244

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           ++ GG++++++   + +S +   + +   E  G     V+ A+ W +     +  + N I
Sbjct: 245 HYEGGIRSFVEHLAQLKSPLHPNVISVTGEHNGIM---VDVALQWTDAYQETMYCFTNNI 301

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  Y E     +   +    DD+    + +LSV + +P F+
Sbjct: 302 PQKDGGTHLAGFRAALTRVLSTYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFS 361

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVN 439
            QTK KLVS D +  VENA       +L +NP EA  +   +++ +  R   RK      
Sbjct: 362 SQTKEKLVSSDVRPAVENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTR 421

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR NQAVLPLRGKILNV
Sbjct: 422 RKGALDIAGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNV 481

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
             A  +++  + Q+  L+ ALG    R +Y  + LRY ++I+MTDADVDG+HI +LLLTF
Sbjct: 482 ERARFDRMLASDQVGTLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTF 541

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           FY++M +LIE+ ++++  PPL+++ QG   +Y  D+      L      G
Sbjct: 542 FYRQMPELIERGYIYIGLPPLYKLKQGKSELYLKDDAALNAYLASNAVEG 591



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G KS            L +  K G+   ++ RFKGLGEM A QL ET ++ + R LL
Sbjct: 735 IVRGNKSHPITSFAQAHAWLLDEAKKGR---QVQRFKGLGEMNAEQLWETTVNPDTRRLL 791

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +          + LMG   + R  FI++ A  + ++ 
Sbjct: 792 QVRIEDAV----AADQIFSTLMGDVVEPRRDFIEDNALKVSNLD 831


>gi|71891809|ref|YP_277538.1| DNA gyrase, subunit B [Candidatus Blochmannia pennsylvanicus str.
           BPEN]
 gi|71795915|gb|AAZ40666.1| DNA gyrase, subunit B [Candidatus Blochmannia pennsylvanicus str.
           BPEN]
          Length = 804

 Score =  485 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 235/563 (41%), Positives = 340/563 (60%), Gaps = 18/563 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           YD+SSI+IL+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE I+GY   I V + 
Sbjct: 5   YDSSSIKILKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEAISGYCKKIVVIIH 64

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFDNS Y++SGGLHGVG+SVV
Sbjct: 65  QDHSVSVQDDGRGIPTGIHEE-EGVSAAEVIMTILHAGGKFDNSNYKVSGGLHGVGVSVV 123

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+ L + + R    + Q +  G PLSPLE     +   GT + F P  K F  K  F
Sbjct: 124 NALSERLELVIKRDFKTYKQVYCEGRPLSPLEIIGDSK-HSGTIVRFWPSLKTFTGKTEF 182

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L +  +  ++L+  +       +   E       E F+  GG+K +++    N++ 
Sbjct: 183 QYDILARRFRELSFLNSGIVIILRDCRNNKE-------ENFHCAGGVKAFVKYLSVNKTP 235

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           I   IF     K      ++E A+ W +    +I S+ N I   +GGTH +GLR A+TR 
Sbjct: 236 IHPNIFYYLGNK---GEISIEVALQWNDNFQEKIYSFTNNIPQRDGGTHLAGLRAAITRT 292

Query: 342 IKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +  Y +     R +    I DD     V ILS+ I +P+F+ QTK KLVS + +  VE+ 
Sbjct: 293 MHFYMDKEGYNRKVKVVTIGDDAREGLVAILSIKIPDPKFSSQTKDKLVSSEVKTAVESL 352

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK-LRLPGKLADCSQ 458
           + +    + ++NPI++  ++  VI  +  R   RK R++ R+  + +   LPGKLADC +
Sbjct: 353 VYEKLIEFFLENPIDSKNIINKVIGAARAREAARKIRDLTRRKGLSEFSTLPGKLADCQE 412

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+  +Q++M L+ 
Sbjct: 413 KNPVYSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLTSQEVMTLIT 472

Query: 519 ALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
           ALGC    ++Y  + LRY  +I+MTDADVDGAHI +LLLTFFY++M ++IE+ H+F+  P
Sbjct: 473 ALGCGIGPNEYNPDKLRYHNIIVMTDADVDGAHIRTLLLTFFYRQMPEIIERGHIFIAQP 532

Query: 578 PLFRITQGTKSVYAHDEEHKQKI 600
           PL+++ +G +  Y  DEE   K 
Sbjct: 533 PLYKVQKGRQERYLKDEEAMSKY 555



 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 14/107 (13%)

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           ++R     +           + +E   +  +  + I R+KGLGEM   QL ET M+   R
Sbjct: 711 IYR----KQVHSF------DQAMEWLMQESRKGLVIQRYKGLGEMNPDQLWETTMNPKNR 760

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +LRV I   +    +       LMG   + R  FI++ A    +V 
Sbjct: 761 CMLRVTIKDAI----EADHLFTTLMGDLVEPRRAFIEKNALKATNVD 803


>gi|120608717|ref|YP_968395.1| DNA gyrase subunit B [Acidovorax citrulli AAC00-1]
 gi|120587181|gb|ABM30621.1| DNA gyrase subunit B [Acidovorax citrulli AAC00-1]
          Length = 877

 Score =  485 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 237/630 (37%), Positives = 346/630 (54%), Gaps = 47/630 (7%)

Query: 11  TLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT- 69
           TLP  +  + +   +S   PDS      + SD Y   +I+ILEGLE VR RPGMYIG T 
Sbjct: 6   TLPEPTLPTGDSQAQSVAAPDSVPAQAAAPSDGYGEGAIQILEGLEAVRKRPGMYIGDTS 65

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPN 126
           D   LHHL  EV+DN++DE +AG+ + I V++  +  ++VVDNGRGIP          P 
Sbjct: 66  DGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHSDNSISVVDNGRGIPTGVKMDDKHEPK 125

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV R   +   +FS+
Sbjct: 126 RSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKMLRLTVRRDGKVHLLEFSQ 185

Query: 187 G------------IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           G            + +SP+    +  +KRGT + F PD +IF +   F    L K  +  
Sbjct: 186 GFVQNRILETVNGVEVSPMRVTGET-DKRGTEVHFLPDTEIFKENNDFHYEILAKRLREL 244

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V+     ++   E         F   GG+  ++Q    ++ ++    F     +
Sbjct: 245 SFLNNGVRIRLKDERTGKEDD-------FSGAGGVMGFVQFINASKKVLHPNAFHATGSR 297

Query: 295 KGTH-------RGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYA 346
                         VE A+ W +  N  +  + N I   +GGTH +GLR A+TR I KY 
Sbjct: 298 PAETYGGIPGTEIGVEVAMQWNDGFNESVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYI 357

Query: 347 ELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF 404
           E  +   K  + +  DD+      +LSV + EP+F+ QTK KLVS + +  VE+ +    
Sbjct: 358 EQNELAKKAKVEVSGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVAKAL 417

Query: 405 DHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHG 463
             YL + P +A  L   ++E +  R   RK RE+ R+   +  + LPGKLADC +     
Sbjct: 418 TDYLEERPNDAKILCGKIVEAARAREAARKAREMTRRKGVLDGMGLPGKLADCQEKDPAL 477

Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523
           +E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  EK+  + +I+ L+ ALG  
Sbjct: 478 SEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARYEKLLTSNEILTLITALGTG 537

Query: 524 T------------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
                           +  + LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ H
Sbjct: 538 IGKASADGTGKGGADDFNVDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGH 597

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +++  PPL+++  G + +Y  D       L
Sbjct: 598 IYIAQPPLYKVKNGKEELYLKDGPALDTFL 627



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             ++ +    K  +      R+KGLGEM   QL ET MD   R LLRV+I   +    + 
Sbjct: 791 DFRQAMAWLIKEAERTTSRQRYKGLGEMNPEQLWETTMDPEVRRLLRVQIEDAI----EA 846

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
                 LMG + + R  FI+  A    ++ 
Sbjct: 847 DRVFTMLMGDEVEPRRDFIETNALRAGNID 876


>gi|145588192|ref|YP_001154789.1| DNA gyrase, B subunit [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145046598|gb|ABP33225.1| DNA gyrase subunit B [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 832

 Score =  485 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 224/593 (37%), Positives = 338/593 (56%), Gaps = 32/593 (5%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGY 93
              +   + Y A+SI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +AGY
Sbjct: 2   TEEKKVVEQYGAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGY 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
            + I V +  +  +++VDNGRG+P          P +S  EI++T LHAGGKFD ++Y++
Sbjct: 62  CSEITVVIQTDNSISIVDNGRGVPTGIKYDDKHEPKRSAAEIVMTELHAGGKFDQNSYKV 121

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKF------------SRGIPLSPLEKKEK 198
           SGGLHGVG+S VNALS  L +T+ R       +F              G+ +SP+     
Sbjct: 122 SGGLHGVGVSCVNALSKWLKLTIRRDGKAHYMEFARGVIQNRNVVDEDGVMVSPITVTGD 181

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
                GT + F  D  IFG+   F    L+K  +  ++L+  V       +         
Sbjct: 182 T-ELSGTEVHFLADETIFGNV-EFHYEILVKRIRELSFLNNGVHIKLIDQR-------TG 232

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK--KGTHRGTVEWAIAWCEENPEI- 315
           ++E+F F GG+K +++   + ++++   IF  +  +      + T E ++ W +   E  
Sbjct: 233 QEEDFAFSGGVKGFVEYINQTKNVLHPNIFYAEGVRPSDLGGQITAEVSMQWNDSFSEQV 292

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +GLR A+TR I KY +  +   K  + I  DD+      +LSV 
Sbjct: 293 LCFTNNIPQRDGGTHLTGLRAAMTRVINKYIDENEVAKKAKVEISGDDMREGLACVLSVK 352

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + EP+F+ QTK KLVS + +  VE  + +    YL + P +A  L   +++ +  R   R
Sbjct: 353 VPEPKFSSQTKDKLVSSEVRGPVEEIVAEALSAYLQERPADAKILCGKIVDAARAREAAR 412

Query: 434 KQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           K R++ R+   +  L LPGKLADC +     +ELFIVEGDSAGGSAKQ R+R  QA+LPL
Sbjct: 413 KARDMTRRKGVLDGLGLPGKLADCQEKDPTKSELFIVEGDSAGGSAKQGRDRRFQAILPL 472

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHI 551
           +GKILNV  A  +K+  +Q+++ L+  LG     +  + + LRY ++IIMTDADVDG+HI
Sbjct: 473 KGKILNVEKARFDKMLASQEVVTLITVLGTGIGIEEYKADKLRYHRIIIMTDADVDGSHI 532

Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
            +LLLTFFY++M +LIE+ H+++  PPL+++  G    Y  D+    ++L + 
Sbjct: 533 RTLLLTFFYRQMPELIERGHIYIAQPPLYKVKFGKNEQYIKDDNELNQLLLKI 585



 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 7/103 (6%)

Query: 583 TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLR 642
            +  K          +          +  +   R+KGLGEM  SQL ET MDA+ RTLL+
Sbjct: 736 DKNQKEQ---TINDFRAAFSWLLSEAERVLSRQRYKGLGEMNPSQLWETTMDASSRTLLQ 792

Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           V+I   +            LMG + + R  FI++ A    ++ 
Sbjct: 793 VKIEDAI----AADQVFTTLMGDEVEPRRAFIEKNALIARNLD 831


>gi|188996890|ref|YP_001931141.1| DNA gyrase, B subunit [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931957|gb|ACD66587.1| DNA gyrase, B subunit [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 812

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 236/597 (39%), Positives = 335/597 (56%), Gaps = 37/597 (6%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y A +I+ + GL+ VR RP MYIG   E+ LHHL  E++DNA+DE +AGYA  I V L 
Sbjct: 13  EYSAEAIQAVTGLDHVRARPAMYIGDIGERGLHHLVWEIVDNAVDEAMAGYAKNISVILH 72

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G +TV D+GRGIPV+ HP+F     +E++ T L AGGKF    Y+ SGGLHGVG SVV
Sbjct: 73  QDGSVTVEDDGRGIPVDIHPEF-KIPAVEMVFTILGAGGKFSKKAYQYSGGLHGVGASVV 131

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L V V R   I+ Q++S G P  PL++       RGT++TF+PD  IF     F
Sbjct: 132 NALSKWLVVEVYRNGKIYRQEYSYGKPAHPLKEIGTTTK-RGTKVTFKPDDSIFET-TTF 189

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               + K  +  A+L+  VK     +++  +       EEFY+  G+  +++   + +  
Sbjct: 190 KYDTIAKRIRELAFLNPGVKFTVIDERKDIK-------EEFYYENGIIDFVRVLNQAKDP 242

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +  ++   K EK G     VE A  +       + S+ N I T EGGTH SG R ALT+ 
Sbjct: 243 LFPDVIYIKGEKDGVL---VEVAFQYNTSYNETLESFVNNIKTVEGGTHVSGFRAALTKS 299

Query: 342 IKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + K     +  + +      DDL      ++SV + EP+F GQTKTKL + D +R VE+ 
Sbjct: 300 MNKTLAGMKLPKELKSGVSGDDLREGLTAVISVKVPEPQFEGQTKTKLGNQDVKRIVESV 359

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458
           + D    +  +N   A K+ E  IE +  R   RK +E++R+ + +    LPGKLADCS+
Sbjct: 360 VGDYLIDFFDKNKDIALKIAEKAIEAAIAREAARKAKEISRRKSFLEDSSLPGKLADCSE 419

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
           +     ELFIVEG+SAGGSAKQ R+R  QA+LPL+GKILNV  A  +KI +N++I  +V 
Sbjct: 420 DNPEICELFIVEGESAGGSAKQGRDRRTQAILPLKGKILNVEKARIDKILSNEEIRAIVN 479

Query: 519 ALGCRT-------------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           A+G                   +    LRY K+I+M DADVDG+HI +LLLT FY+    
Sbjct: 480 AIGTGIGLPIKSEDEENKTEEGFDLSKLRYHKIILMADADVDGSHITTLLLTLFYRYFPQ 539

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEE-------FKKHGKGKIEIS 615
           +IE  HL+L  PPL+++ +G   +Y  D+E   KI+ E        +     K+EI 
Sbjct: 540 IIENGHLYLAQPPLYKLKKGRSEIYVKDDEELAKIVIEYASDEVSIEGKNLNKLEIK 596



 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 8/108 (7%)

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           P+  +    KS+     E   K+ +   + G    EI R+KGLGEM   QL ET M+   
Sbjct: 712 PII-VNYKDKSI---TVEDLDKLYDVIYEAGMTGCEIQRYKGLGEMNPEQLWETTMNPKT 767

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           R LL+V I           +  + LMG K + R +FI + A  + ++ 
Sbjct: 768 RRLLQVNIED----AALADEIFSILMGEKVEPRKEFIMKYAKEVRNLD 811


>gi|21240778|ref|NP_640360.1| DNA gyrase subunit B [Xanthomonas axonopodis pv. citri str. 306]
 gi|21106042|gb|AAM34896.1| DNA gyrase subunit B [Xanthomonas axonopodis pv. citri str. 306]
          Length = 814

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 229/580 (39%), Positives = 339/580 (58%), Gaps = 18/580 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGY 93
               + +  YD+S I +L GLE VR RPGMYIG   D   LHH+  EV+DN++DE +AG+
Sbjct: 6   NTPPTPNGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDEALAGH 65

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ I V +  +G + V DNGRG+PV+ H K    S  E+ILT LHAGGKFD+++Y++SGG
Sbjct: 66  ADDIVVKILADGSVAVSDNGRGVPVDIH-KEEGVSAAEVILTVLHAGGKFDDNSYKVSGG 124

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS+ L + + R    + Q+++ G P  PL++ E     RGT + F+P  
Sbjct: 125 LHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQLEASTK-RGTTLRFKPSV 183

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF D   F    L +  +  ++L+  VK     ++          +++F++ GG+++++
Sbjct: 184 AIFSDV-EFHYDILARRLRELSFLNSGVKITLIDERG------EGRRDDFHYEGGIRSFV 236

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   + +S +   + +   E  G     V+ A+ W +     +  + N I   +GGTH +
Sbjct: 237 EHLAQLKSPLHPNVISVTGEHNGIM---VDVALQWTDAYQETMYCFTNNIPQKDGGTHLA 293

Query: 333 GLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR +  Y E     +   +    DD+    + +LSV + +P F+ QTK KLVS 
Sbjct: 294 GFRAALTRVLSTYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSS 353

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRL 449
           D +  VENA       +L +NP EA  +   +++ +  R   RK      RK A+    L
Sbjct: 354 DVRPAVENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGL 413

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +ELFIVEGDSAGGSAKQ RNR NQAVLPLRGKILNV  A  +++  
Sbjct: 414 PGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLA 473

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           + Q+  L+ ALG    R +Y  + LRY ++I+MTDADVDG+HI +LLLTFFY++M +LIE
Sbjct: 474 SDQVGTLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIE 533

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           + ++++  PPL+++ QG   +Y  D+      L      G
Sbjct: 534 RGYIYIGLPPLYKLKQGKSELYLKDDAALNAYLASNAVEG 573



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G KS            L +  K G+   ++ RFKGLGEM A QL ET ++ + R LL
Sbjct: 717 IVRGNKSHPITSFAQAHAWLLDEAKKGR---QVQRFKGLGEMNAEQLWETTVNPDTRRLL 773

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +          + LMG   + R  FI++ A  + ++ 
Sbjct: 774 QVRIEDAV----AADQIFSTLMGDVVEPRRDFIEDNALKVSNLD 813


>gi|294627435|ref|ZP_06706019.1| DNA gyrase subunit B [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292598256|gb|EFF42409.1| DNA gyrase subunit B [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
          Length = 814

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 229/580 (39%), Positives = 340/580 (58%), Gaps = 18/580 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGY 93
               + +  YD+S I +L GLE VR RPGMYIG   D   LHH+  EV+DN++DE +AG+
Sbjct: 6   NTPPTPNGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDEALAGH 65

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ I V +  +G + V DNGRG+PV+ H K    S  E+ILT LHAGGKFD+++Y++SGG
Sbjct: 66  ADDIVVKILADGSVAVSDNGRGVPVDIH-KEEGVSAAEVILTVLHAGGKFDDNSYKVSGG 124

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS+ L + + R    + Q+++ G P  PL++ E     RGT + F+P  
Sbjct: 125 LHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQLEASTK-RGTTLRFKPSV 183

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF D   F    L +  +  ++L+  VK     ++          +++F++ GG+++++
Sbjct: 184 AIFSDV-EFHYDILARRLRELSFLNSGVKITLIDERG------EGRRDDFHYEGGIRSFV 236

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   + +S +   + +   E  G     V+ A+ W +     +  + N I   +GGTH +
Sbjct: 237 EHLAQLKSPLHPNVISVTGEHNGIM---VDVALQWTDAYQETMYCFTNNIPQKDGGTHLA 293

Query: 333 GLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR +  Y E     +   +    DD+    + +LSV + +P F+ QTK KLVS 
Sbjct: 294 GFRAALTRVLSTYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSS 353

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRL 449
           D +  VENA       +L +NP EA  +   +++ +  R   RK      RK A+    L
Sbjct: 354 DVRPAVENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGL 413

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +ELFIVEGDSAGGSAKQ RNR NQAVLPLRGKILNV  A  +++ +
Sbjct: 414 PGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLS 473

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           + Q+  L+ ALG    R +Y  + LRY ++I+MTDADVDG+HI +LLLTFFY++M +LIE
Sbjct: 474 SDQVGTLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIE 533

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           + ++++  PPL+++ QG   +Y  D+      L      G
Sbjct: 534 RGYIYIGLPPLYKLKQGKSELYLKDDAALNAYLASNAVEG 573



 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G KS            L +  K G+   ++ RFKGLGEM A QL ET ++ + R LL
Sbjct: 717 IVRGNKSHPITSFAQAHAWLLDEAKKGR---QVQRFKGLGEMSAEQLWETTVNPDTRRLL 773

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +          + LMG   + R  FI++ A  + ++ 
Sbjct: 774 QVRIEDAV----AADQIFSTLMGDVVEPRRDFIEDNALKVSNLD 813


>gi|294665502|ref|ZP_06730785.1| DNA gyrase subunit B [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292604705|gb|EFF48073.1| DNA gyrase subunit B [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 814

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 229/580 (39%), Positives = 340/580 (58%), Gaps = 18/580 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGY 93
               + +  YD+S I +L GLE VR RPGMYIG   D   LHH+  EV+DN++DE +AG+
Sbjct: 6   NTPPTPNGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDEALAGH 65

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ I V +  +G + V DNGRG+PV+ H K    S  E+ILT LHAGGKFD+++Y++SGG
Sbjct: 66  ADDIVVKILADGSVAVSDNGRGVPVDIH-KEEGVSAAEVILTVLHAGGKFDDNSYKVSGG 124

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS+ L + + R    + Q+++ G P  PL++ E     RGT + F+P  
Sbjct: 125 LHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQLEASTK-RGTTLRFKPSV 183

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF D   F    L +  +  ++L+  VK     ++          +++F++ GG+++++
Sbjct: 184 AIFSDV-EFHYDILARRLRELSFLNSGVKITLIDERG------EGRRDDFHYEGGIRSFV 236

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   + +S +   + +   E  G     V+ A+ W +     +  + N I   +GGTH +
Sbjct: 237 EHLAQLKSPLHPNVISVTGEHNGIM---VDVALQWTDAYQETMYCFTNNIPQKDGGTHLA 293

Query: 333 GLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR +  Y E     +   +    DD+    + +LSV + +P F+ QTK KLVS 
Sbjct: 294 GFRAALTRVLSTYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSS 353

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRL 449
           D +  VENA       +L +NP EA  +   +++ +  R   RK      RK A+    L
Sbjct: 354 DVRPAVENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGL 413

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +ELFIVEGDSAGGSAKQ RNR NQAVLPLRGKILNV  A  +++ +
Sbjct: 414 PGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLS 473

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           + Q+  L+ ALG    R +Y  + LRY ++I+MTDADVDG+HI +LLLTFFY++M +LIE
Sbjct: 474 SDQVGTLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIE 533

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           + ++++  PPL+++ QG   +Y  D+      L      G
Sbjct: 534 RGYIYIGLPPLYKLKQGKSELYLKDDAALNAYLASNAVEG 573



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G KS            L +  K G+   ++ RFKGLGEM A QL ET ++ + R LL
Sbjct: 717 IVRGNKSHPITSFAQAHAWLLDEAKKGR---QVQRFKGLGEMNAEQLWETTVNPDTRRLL 773

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +          + LMG   + R  FI++ A  + ++ 
Sbjct: 774 QVRIEDAV----AADQIFSTLMGDVVEPRRDFIEDNALKVSNLD 813


>gi|239813022|ref|YP_002941932.1| DNA gyrase, subunit beta [Variovorax paradoxus S110]
 gi|239799599|gb|ACS16666.1| DNA gyrase, B subunit [Variovorax paradoxus S110]
          Length = 874

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 232/634 (36%), Positives = 341/634 (53%), Gaps = 46/634 (7%)

Query: 9   FSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGG 68
            S    + +    +   + EI  +       A  +Y   SI ILEGLE VR RPGMYIG 
Sbjct: 1   MSAEENKPEVPHTEPVYTPEIESAVPIEITPADTSYGEGSITILEGLEAVRKRPGMYIGD 60

Query: 69  T-DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKF 124
           T D   LHHL  EV+DN++DE +AG+ + I V++  +  ++V DNGRGIP          
Sbjct: 61  TSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHTDNSISVTDNGRGIPTGVKMDDKHE 120

Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184
           P +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L + V R+  I   +F
Sbjct: 121 PKRSASEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSVMLRLVVRREGKIHELEF 180

Query: 185 S------------RGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQ 232
           S             G+ +SP+    +  +KRGT + F PD +IF + A F    L K  +
Sbjct: 181 SRGFVQNRLIETVNGVEVSPMRIIGET-DKRGTEVHFLPDTEIFKENADFHYEILSKRLR 239

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             ++L+  V+     ++   E         F   GG+K ++    + ++++   +F    
Sbjct: 240 ELSFLNNGVRIRLKDERSGKEDD-------FSGAGGVKGFVDFINKGKTVLHPNVFYAMG 292

Query: 293 EKKGTHRGT-------VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKK 344
           EK     G        VE A+ W      ++  + N I   +GGTH +GLR A+TR I K
Sbjct: 293 EKPADTYGGIPGTHIGVEVAMQWNSGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINK 352

Query: 345 YAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRD 402
           Y E  +   K  + +  DD+      +LSV + EP+F+ QTK KLVS + +  VE+ +  
Sbjct: 353 YIEENEFAKKAKVEVTGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVGR 412

Query: 403 PFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIA 461
               YL + P +A  +   ++E +  R   RK RE+ R+   +  + LPGKLADC +   
Sbjct: 413 LLTDYLQERPNDAKIICGKIVEAARAREAARKAREMTRRKGVLDGMGLPGKLADCQEKDP 472

Query: 462 HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
              E+++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  EK+  + +I+ ++ ALG
Sbjct: 473 ALCEVYLVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARYEKLLTSNEILTMITALG 532

Query: 522 CRTR-----------SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
                            +    LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ 
Sbjct: 533 TGIGRAGATSAGGGADDFNVAKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 592

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           H+++  PPL+++  G +  Y  D       L + 
Sbjct: 593 HIYIAQPPLYKVKVGKEEQYLKDGPALDAFLLKV 626



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 4/91 (4%)

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
              +  ++      +      R+KGLGEM  +QL ET MD   R LLRV+I+  +    +
Sbjct: 787 ADFRIAMKWLIGQAENATSRQRYKGLGEMNPAQLWETTMDPTVRRLLRVQIDDAI----E 842

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
                  LMG + + R +FI++ A    ++ 
Sbjct: 843 ADRVFTMLMGDEVEPRREFIEQNALRAANID 873


>gi|289662280|ref|ZP_06483861.1| DNA gyrase subunit B [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 814

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 230/580 (39%), Positives = 339/580 (58%), Gaps = 18/580 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGY 93
               + S  YD+S I +L GLE VR RPGMYIG   D   LHH+  EV+DN++DE +AG+
Sbjct: 6   NTPPTPSGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDEALAGH 65

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ I V +  +G + V DNGRG+PV+ H K    S  E+ILT LHAGGKFD+++Y++SGG
Sbjct: 66  ADDIVVKILVDGSVAVSDNGRGVPVDIH-KEEGVSAAEVILTVLHAGGKFDDNSYKVSGG 124

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS+ L + + R    + Q+++ G P  PL++ E     RGT + F+P  
Sbjct: 125 LHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQLEASTK-RGTTLRFKPSV 183

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF D   F    L +  +  ++L+  VK     ++          +++F++ GG+++++
Sbjct: 184 AIFSDV-EFHYDILARRLRELSFLNSGVKITLIDERG------EGRRDDFHYEGGIRSFV 236

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   + +S +   + +   E  G     V+ A+ W +     +  + N I   +GGTH +
Sbjct: 237 EHLAQLKSPLHPNVISVTGEHNGI---VVDVALQWTDAYQETMYCFTNNIPQKDGGTHLA 293

Query: 333 GLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR +  Y E     +   +    DD+    + +LSV + +P F+ QTK KLVS 
Sbjct: 294 GFRAALTRVLSTYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSS 353

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRL 449
           D +  VENA       +L +NP EA  +   +++ +  R   RK      RK A+    L
Sbjct: 354 DVRPAVENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGL 413

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +ELFIVEGDSAGGSAKQ RNR NQAVLPLRGKILNV  A  +++  
Sbjct: 414 PGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLA 473

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           + Q+  L+ ALG    R +Y  + LRY ++I+MTDADVDG+HI +LLLTFFY++M +LIE
Sbjct: 474 SDQVGTLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIE 533

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           + ++++  PPL+++ QG   +Y  D+      L      G
Sbjct: 534 RGYIYIGLPPLYKLKQGKSELYLKDDAALNAYLASNAVEG 573



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G KS    +       L +  K G+   ++ RFKGLGEM A QL ET ++ + R LL
Sbjct: 717 IVRGNKSHPITNFAQAHAWLLDEAKKGR---QVQRFKGLGEMNAEQLWETTVNPDTRRLL 773

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +          + LMG   + R  FI++ A  + ++ 
Sbjct: 774 QVRIEDAV----AADQIFSTLMGDVVEPRRDFIEDNALKVSNLD 813


>gi|71899732|ref|ZP_00681884.1| DNA gyrase, B subunit [Xylella fastidiosa Ann-1]
 gi|71730527|gb|EAO32606.1| DNA gyrase, B subunit [Xylella fastidiosa Ann-1]
          Length = 814

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 229/571 (40%), Positives = 342/571 (59%), Gaps = 18/571 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           YD+S I +L GL+ VR RPGMYIG   D   LHH+  EV+DN++DE +AG+A+ I V + 
Sbjct: 16  YDSSKITVLRGLDAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDEALAGHADSILVKIH 75

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G ++V DNGRGIPV+ H K    S  E+ILT LHAGGKFD+++Y++SGGLHGVG+SVV
Sbjct: 76  IDGSVSVSDNGRGIPVDIH-KEEGVSAAEVILTVLHAGGKFDDNSYKVSGGLHGVGVSVV 134

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+ L + + R    + Q++  G P  PL++  +V  KRGT + F+P  +IF D   F
Sbjct: 135 NALSERLWLDIWRDGYHYQQEYFLGEPQYPLKQL-EVSAKRGTTLRFKPAKEIFSDV-EF 192

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  ++L+  +K     ++          +++F++ GG++++++   + ++ 
Sbjct: 193 HYENLAKRLRELSFLNSGLKVSLIDERG------EGRRDDFHYEGGIRSFVEHLAQLKTP 246

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +   + +   E  G     V+ A+ W +     +  + N I   +GGTH +G R ALTR 
Sbjct: 247 LHPNVISVTGEHNGI---VVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRAALTRT 303

Query: 342 IKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +  Y E     R   I    DD+    + +LSV + EP F+ QTK KLVS D +  VE  
Sbjct: 304 LGNYIEQNGVARQAKITFSGDDMREGMIAVLSVKVPEPSFSSQTKEKLVSSDVKPAVEAT 363

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458
                + +L +NP EA  +   +++ +  R   RK R++ R+   +    LPGKLADC +
Sbjct: 364 FGLRLEEFLQENPNEARAIAGKIVDAARAREAARKARDLTRRKGVLDIAGLPGKLADCQE 423

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +ELFIVEGDSAGGSAKQ RNR NQAVLPLRGKILNV  A  +++ ++ ++  L+ 
Sbjct: 424 KDPAMSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLSSAEVGTLIT 483

Query: 519 ALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
           ALG    + +Y  + LRY ++IIMTDADVDG+HI +LLLTFFY++M +LIE+ H+++  P
Sbjct: 484 ALGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHVYIGLP 543

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           PL+++ QG   +Y  D+      L      G
Sbjct: 544 PLYKLKQGKSELYLKDDIALNVYLANSAVEG 574



 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 11/107 (10%)

Query: 581 RITQGTKSVY--AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           +I +GTKS       +      L E  K G+   +I RFKGLGEM   QL +T ++ + R
Sbjct: 716 KIVRGTKSQSIECFGDAQ--AWLLEEAKKGR---QIQRFKGLGEMNPEQLWDTTVNPDTR 770

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            LL+V I   +          + LMG   + R  FI+  A  +  + 
Sbjct: 771 RLLQVCIEDGI----AADQIFSTLMGDVVEPRRGFIENNALKVTRLD 813


>gi|325926216|ref|ZP_08187574.1| DNA gyrase subunit B [Xanthomonas perforans 91-118]
 gi|325543398|gb|EGD14823.1| DNA gyrase subunit B [Xanthomonas perforans 91-118]
          Length = 814

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 229/578 (39%), Positives = 339/578 (58%), Gaps = 18/578 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95
             + +  YD+S I +L GLE VR RPGMYIG   D   LHH+  EV+DN++DE +AG+A+
Sbjct: 8   PPTPNGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDEALAGHAD 67

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V +  +G + V DNGRG+PV+ H K    S  E+ILT LHAGGKFD+++Y++SGGLH
Sbjct: 68  DIVVKILADGSVAVSDNGRGVPVDIH-KEEGVSAAEVILTVLHAGGKFDDNSYKVSGGLH 126

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS+ L + + R    + Q+++ G P  PL++ E     RGT + F+P   I
Sbjct: 127 GVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQLEASTK-RGTTLRFKPSVAI 185

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F D   F    L +  +  ++L+  VK     ++          +++F++ GG++++++ 
Sbjct: 186 FSDV-EFHYDILARRLRELSFLNSGVKITLIDERG------EGRRDDFHYEGGIRSFVEH 238

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             + +S +   + +   E  G     V+ A+ W +     +  + N I   +GGTH +G 
Sbjct: 239 LAQLKSPLHPNVISVTGEHNGIM---VDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGF 295

Query: 335 RVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y E     +   +    DD+    + +LSV + +P F+ QTK KLVS D 
Sbjct: 296 RAALTRVLSTYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDV 355

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPG 451
           +  VENA       +L +NP EA  +   +++ +  R   RK      RK A+    LPG
Sbjct: 356 RPAVENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGLPG 415

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +ELFIVEGDSAGGSAKQ RNR NQAVLPLRGKILNV  A  +++  + 
Sbjct: 416 KLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLASD 475

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           Q+  L+ ALG    R +Y  + LRY ++I+MTDADVDG+HI +LLLTFFY++M +LIE+ 
Sbjct: 476 QVGTLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERG 535

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++++  PPL+++ QG   +Y  D+      L      G
Sbjct: 536 YIYIGLPPLYKLKQGKSELYLKDDAALNAYLASNAVEG 573



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G KS            L +  K G+   ++ RFKGLGEM A QL ET ++ + R LL
Sbjct: 717 IVRGNKSHPITSFAQAHAWLLDEAKKGR---QVQRFKGLGEMNAEQLWETTVNPDTRRLL 773

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +          + LMG   + R  FI++ A  + ++ 
Sbjct: 774 QVRIEDAV----AADQIFSTLMGDVVEPRRDFIEDNALKVSNLD 813


>gi|124483570|emb|CAM32658.1| DNA gyrase subunit B, type II topoisomerase, ATPase activity,
           protein [Herbaspirillum seropedicae]
          Length = 832

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 231/602 (38%), Positives = 346/602 (57%), Gaps = 32/602 (5%)

Query: 30  PDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDE 88
             SPA    SA  +Y ASSI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE
Sbjct: 2   STSPADNTNSAQQSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDE 61

Query: 89  VIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDN 145
            +AGY + I V++  +  +++ DNGRGIP          P +S  EI++T LHAGGKFD 
Sbjct: 62  ALAGYCSEIHVTIHADNSISITDNGRGIPTGLKMDDKHEPKRSAAEIVMTELHAGGKFDQ 121

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFS------------RGIPLSPL 193
           ++Y++SGGLHGVG+S VNALS +L +T+ R   + + +F+             G+ +SP+
Sbjct: 122 NSYKVSGGLHGVGVSCVNALSKKLKLTIRRDGKVHAMEFAKGIVQNRELEMVDGVQVSPI 181

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           +   +  +KRGT + F  D +IF     F    L K  +  ++L+  V    +  +    
Sbjct: 182 KVIGE-SDKRGTEVHFWADEEIFT-HVEFHYEILAKRIRELSFLNNGVHIKLTDQR---- 235

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK--KGTHRGTVEWAIAWCEE 311
                ++E+F F GG + +++   +N+S+++  IF    EK        TV+ ++ W + 
Sbjct: 236 ---TGKEEDFAFEGGTRGFVEYINKNKSILNPTIFQATGEKQSDQGTMITVDVSMQWNDA 292

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVG 368
              ++  + N I   +GGTH +GLR A+TR I KY E      K  + I  DD+      
Sbjct: 293 FNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEENDLAKKAKVEISGDDMREGLTC 352

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           +LSV + EP+F+ QTK KLVS + +  VE  +      +L + P +A  +   ++E +  
Sbjct: 353 VLSVKVPEPKFSSQTKDKLVSSEVRGPVEEIVAKTLTDFLAEKPNDAKIICGKIVEAARA 412

Query: 429 RLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
           R   RK RE+ R+   +  L L  KLADC +      EL+IVEGDSAGGSAKQ R+R  Q
Sbjct: 413 REAARKARELTRRKGVMDGLGLSSKLADCQERDPALCELYIVEGDSAGGSAKQGRDRKFQ 472

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADV 546
           A+LPLRGK+LNV  A  EK+ +++QI  L+  LG      ++  + LRY ++IIMTDADV
Sbjct: 473 AILPLRGKVLNVEKARFEKMLSSEQITTLIATLGTSIGADEFNPDKLRYHRIIIMTDADV 532

Query: 547 DGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKK 606
           DGAHI +LLLT FY++M  L+E+ H+++  PPL+++  G    Y  D+  + + + +   
Sbjct: 533 DGAHIRTLLLTLFYRQMPALVERGHIYIAQPPLYKVKAGKDERYLKDDFEEAQYMMQIAL 592

Query: 607 HG 608
           + 
Sbjct: 593 ND 594



 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 6/100 (6%)

Query: 586 TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645
            +      +   ++ +   +   +  +   R+KGLGEM   QL ET MD   R LL+V+I
Sbjct: 738 KRKESVITD--FRQAMAWLRDEAERGVNKQRYKGLGEMNPEQLWETTMDPTVRRLLKVQI 795

Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              +            LMG   + R  FI+  A    ++ 
Sbjct: 796 EDAI----AADQIFMTLMGDDVEPRRAFIESNALQAGNID 831


>gi|300309349|ref|YP_003773441.1| DNA gyrase subunit B [Herbaspirillum seropedicae SmR1]
 gi|300072134|gb|ADJ61533.1| DNA gyrase subunit B protein [Herbaspirillum seropedicae SmR1]
          Length = 832

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 231/602 (38%), Positives = 346/602 (57%), Gaps = 32/602 (5%)

Query: 30  PDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDE 88
             SPA    SA  +Y ASSI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE
Sbjct: 2   STSPADNTNSAQQSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDE 61

Query: 89  VIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDN 145
            +AGY + I V++  +  +++ DNGRGIP          P +S  EI++T LHAGGKFD 
Sbjct: 62  ALAGYCSEIHVTIHADNSISITDNGRGIPTGLKMDDKHEPKRSAAEIVMTELHAGGKFDQ 121

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFS------------RGIPLSPL 193
           ++Y++SGGLHGVG+S VNALS +L +T+ R   + + +F+             G+ +SP+
Sbjct: 122 NSYKVSGGLHGVGVSCVNALSKKLKLTIRRDGKVHAMEFAKGIVQNRELEMVDGVQVSPI 181

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           +   +  +KRGT + F  D +IF     F    L K  +  ++L+  V    +  +    
Sbjct: 182 KVIGE-SDKRGTEVHFWADEEIFT-HVEFHYEILAKRIRELSFLNNGVHIKLTDQR---- 235

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK--KGTHRGTVEWAIAWCEE 311
                ++E+F F GG + +++   +N+S+++  IF    EK        TV+ ++ W + 
Sbjct: 236 ---TGKEEDFAFEGGTRGFVEYINKNKSILNPTIFQATGEKQSDQGTMITVDVSMQWNDA 292

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVG 368
              ++  + N I   +GGTH +GLR A+TR I KY E      K  + I  DD+      
Sbjct: 293 FNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEENDLAKKAKVEISGDDMREGLTC 352

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           +LSV + EP+F+ QTK KLVS + +  VE  +      +L + P +A  +   ++E +  
Sbjct: 353 VLSVKVPEPKFSSQTKDKLVSSEVRGPVEEIVAKTLTDFLAEKPNDAKIICGKIVEAARA 412

Query: 429 RLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
           R   RK RE+ R+   +  L L  KLADC +      EL+IVEGDSAGGSAKQ R+R  Q
Sbjct: 413 REAARKARELTRRKGVMDGLGLSSKLADCQERDPALCELYIVEGDSAGGSAKQGRDRKFQ 472

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADV 546
           A+LPLRGK+LNV  A  EK+ +++QI  L+  LG      ++  + LRY ++IIMTDADV
Sbjct: 473 AILPLRGKVLNVEKARFEKMLSSEQITTLIATLGTSIGADEFNPDKLRYHRIIIMTDADV 532

Query: 547 DGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKK 606
           DGAHI +LLLT FY++M  L+E+ H+++  PPL+++  G    Y  D+  + + + +   
Sbjct: 533 DGAHIRTLLLTLFYRQMPALVERGHIYIAQPPLYKVKAGKDERYLKDDFEEAQYMMQIAL 592

Query: 607 HG 608
           + 
Sbjct: 593 ND 594



 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 6/100 (6%)

Query: 586 TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645
            +      +   ++ +   +   +  +   R+KGLGEM   QL ET MD   R LL+V+I
Sbjct: 738 KRKESVITD--FRQAMAWLRDEAERGVNKQRYKGLGEMNPEQLWETTMDPTVRRLLKVQI 795

Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              +            LMG   + R  FI+  A    ++ 
Sbjct: 796 EDAI----AADQIFMTLMGDDVEPRRAFIESNALQAGNID 831


>gi|218781946|ref|YP_002433264.1| DNA gyrase, B subunit [Desulfatibacillum alkenivorans AK-01]
 gi|218763330|gb|ACL05796.1| DNA gyrase, B subunit [Desulfatibacillum alkenivorans AK-01]
          Length = 812

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 224/565 (39%), Positives = 338/565 (59%), Gaps = 16/565 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y A +I++L+GLE VR RP MYIG    + LHHL  EV+DN++DE +AGY + I+V+
Sbjct: 2   TQEYTAENIKVLQGLEAVRKRPSMYIGNVSTEGLHHLVYEVVDNSIDEAMAGYCDHIQVT 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  +TV DNGRGIP   H K      +E+++  LHAGGKFDN+TY++SGGLHGVG+S
Sbjct: 62  IHEDNSVTVEDNGRGIPTGIH-KTEGIPAVEVVMCKLHAGGKFDNATYKVSGGLHGVGVS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALSD L V + +   I+ Q +S+G   S LE   K +  RGT+I F PD  I  D  
Sbjct: 121 VVNALSDFLEVEIYQGGEIYYQTYSKGGKTSELEVIGKTKK-RGTKIHFAPDTTIMTD-E 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +  A L K  +  A+L+  +K     ++   EK      EEF + GG+ ++++    +R
Sbjct: 179 DYQYAILSKRLRELAFLNAGIKITLEDERSDEEK------EEFLYKGGIISFVEYLNRSR 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
           + +   IF    +        +++  A+   +  I ++ N I T EGG+H  G + ALTR
Sbjct: 233 TTLHKPIFMAGAKSNIEIEVALQYTTAF---SESILTFANNINTAEGGSHLIGFKAALTR 289

Query: 341 GIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I +YA      +     I  DD+      I+S+ I +P+F GQTKTKL + + +  VE+
Sbjct: 290 TINQYASSDNVAKNAQTKISGDDVREGLTAIVSIRIPDPQFEGQTKTKLGNSEVKGLVES 349

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT-AIRKLRLPGKLADCS 457
            + +    +  +NP  A K++   +E +  R   R+ R++ RK  A+    LPGKLA+C 
Sbjct: 350 LVNEKLGAFFEENPSIAKKMVMRAVEAARAREAARRARDLARKKGALNDSTLPGKLAECQ 409

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
            +     ELF+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +KI  + +I +++
Sbjct: 410 ISEPKLRELFLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKILQSDEIKNMI 469

Query: 518 QALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
            ALG      +Y  + +RY KVIIMTDADVDG+HI +LLLTFFY+++ +++++  L++  
Sbjct: 470 TALGTGVGAEEYDIKKIRYHKVIIMTDADVDGSHIRTLLLTFFYRQLPEILDEGFLYIAQ 529

Query: 577 PPLFRITQGTKSVYAHDEEHKQKIL 601
           PPL+R+ +G  + Y  D++   + L
Sbjct: 530 PPLYRVGKGKAAKYLKDDQEMSEYL 554



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 4/103 (3%)

Query: 583 TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLR 642
           ++G       +  +K+++L    +  K  I + R+KGLGEM   QL ET MD  KR L++
Sbjct: 713 SRGKDEEKTVELPNKEELLHHLMEESKKGISLQRYKGLGEMNPDQLWETTMDPEKRRLVK 772

Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           V++   +    +T +    LMG + + R  FIQ  A  +  + 
Sbjct: 773 VKVEDAI----ETDEMFRLLMGDEVEPRRDFIQSNALEVTQLD 811


>gi|237756532|ref|ZP_04585059.1| DNA gyrase, B subunit [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691306|gb|EEP60387.1| DNA gyrase, B subunit [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 812

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 236/603 (39%), Positives = 338/603 (56%), Gaps = 37/603 (6%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           N   +  Y A +I+ + GL+ VR RP MYIG   E+ LHHL  E++DNA+DE +AGYA  
Sbjct: 7   NIQNNTEYSAEAIQAVTGLDHVRARPAMYIGDIGERGLHHLAWEIVDNAVDEAMAGYAKN 66

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V L  +G +TV D+GRGIPV+ HP+F     +E++ T L AGGKF    Y+ SGGLHG
Sbjct: 67  ITVILHQDGSVTVEDDGRGIPVDIHPEF-KIPAVEMVFTILGAGGKFSKKAYQYSGGLHG 125

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS  L V V R   I+ Q++S G P+ PL++       RGT++TF+PD  IF
Sbjct: 126 VGASVVNALSKWLVVEVYRNGKIYRQEYSYGKPVHPLKEVGTTTK-RGTKVTFKPDDSIF 184

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                F    + K  +  A+L+  VK     +++  +       EEFY+  G+  +++  
Sbjct: 185 ET-TTFKYDTIAKRIRELAFLNPGVKFTVIDERKDIK-------EEFYYENGIIDFVRVL 236

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            + +  +  ++   K EK G     VE A  +       + S+ N I T EGGTH SG R
Sbjct: 237 NQAKDPLFPDVIYIKGEKDGVL---VEVAFQYNTSYNETLESFVNNIKTVEGGTHVSGFR 293

Query: 336 VALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALT+ + K     +  + +      DDL      ++SV + EP+F GQTKTKL + D +
Sbjct: 294 AALTKSMNKTLAGMKLPKELKSGVSGDDLREGLTAVISVKVPEPQFEGQTKTKLGNQDVK 353

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGK 452
           R VE+ + D    +  +N   A K+ E  IE +  R   RK +E++R+ + +    LPGK
Sbjct: 354 RIVESVVGDYLIDFFDKNKDIALKIAEKAIEAAIAREAARKAKEISRRKSFLEDSSLPGK 413

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS++     ELFIVEG+SAGGSAKQ R+R  QA+LPL+GKILNV  A  +KI +N++
Sbjct: 414 LADCSEDNPEICELFIVEGESAGGSAKQGRDRRTQAILPLKGKILNVEKARIDKILSNEE 473

Query: 513 IMDLVQALGCRT-------------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
           I  +V A+G                   +    LRY K+I+M DADVDG+HI +LLLT F
Sbjct: 474 IRAIVNAIGTGIGLPIKSEDEENKTEEGFDLSKLRYHKIILMADADVDGSHITTLLLTLF 533

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEE-------FKKHGKGKI 612
           Y+    +IE  HL++  PPL+++ +G   +Y  D+E   KI+ E        +     K+
Sbjct: 534 YRYFPQIIENGHLYIAQPPLYKLKKGRSEIYVKDDEELAKIVIEYASDEVSIEGKNLNKL 593

Query: 613 EIS 615
           EI 
Sbjct: 594 EIK 596



 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 8/108 (7%)

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           P+  +    KS+     E   K+ +   + G    EI R+KGLGEM   QL ET M+   
Sbjct: 712 PIV-VNYKDKSI---TVEDFDKLYDVIYEAGMTGCEIQRYKGLGEMNPEQLWETTMNPKT 767

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           R LL+V I           +  + LMG K + R +FI + A  + ++ 
Sbjct: 768 RRLLQVSIED----AALADEIFSILMGEKVEPRKEFIMKYAKEVRNLD 811


>gi|163854307|ref|YP_001628605.1| DNA gyrase subunit B [Bordetella petrii DSM 12804]
 gi|163258035|emb|CAP40334.1| DNA gyrase subunit B [Bordetella petrii]
          Length = 817

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 223/577 (38%), Positives = 340/577 (58%), Gaps = 17/577 (2%)

Query: 36  ANQSASDN-YDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGY 93
            N +  ++ Y A SI++L+GLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AGY
Sbjct: 5   QNSNPENSGYGADSIKMLKGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEALAGY 64

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFP-NKSTLEIILTTLHAGGKFDNSTYEISG 152
            + I V++  +  ++V DNGRGIP   H      +S  EI++T LHAGGKFD ++Y++SG
Sbjct: 65  CDDIVVTIHTDNSISVSDNGRGIPTAIHKDDEFGRSAAEIVMTELHAGGKFDQNSYKVSG 124

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+S VNALS+ L +T+ R   +   +F +G  ++PL       +KRGT + F  D
Sbjct: 125 GLHGVGVSCVNALSEWLRLTIRRNGEVHQMEFRQGERVAPLAVTG-TTDKRGTEVRFLAD 183

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P I  +   +    L K  +  ++L+  VK      ++  E       E F F GG++ +
Sbjct: 184 P-IIFNNIEYHYDVLSKRLRELSFLNNGVKIRLIDQRQGKE-------ENFAFSGGVRGF 235

Query: 273 LQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++    +++++   +F    E   G     VE A+ W +     +  + N I   +GGTH
Sbjct: 236 VEYINRSKTVLHPNVFAVSAESNAGGVPVGVEVAMQWNDTYSETVLCFTNNIPQRDGGTH 295

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +GLR A+TR I KY    +   K  +    DD+      +LSV + EP+F+ QTK KLV
Sbjct: 296 MTGLRAAMTRVINKYIADNELAKKAKVETSGDDMREGLACVLSVKVPEPKFSSQTKDKLV 355

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKL 447
           S + +  VE A+    + +L+++P +A  L   ++E +  R   RK RE+ R+ + +   
Sbjct: 356 SSEVRPAVEEAVARTLETWLLEHPNDAKALCGKIVEAARAREAARKAREMTRRKSVLEGA 415

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +      EL+IVEGDSAGGSAKQ R+R  QA+LPLRGK+LNV  A  +++
Sbjct: 416 GLPGKLADCQEKDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARFDRL 475

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             ++QI  L+ ALG      +  + LRY ++IIMTDADVDGAHI +LLLT  Y++M +LI
Sbjct: 476 IASEQIATLITALGTSIGPDFNIDKLRYHRLIIMTDADVDGAHIRTLLLTLLYRQMPELI 535

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           E+ ++++  PPL+++  G +  Y  D++ + + + + 
Sbjct: 536 ERGYVYIAQPPLYKVKVGREERYLKDDQEEAQFMLQL 572



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 7/102 (6%)

Query: 585 GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644
             K  +       ++ ++  +   +  I   R+KGLGEM   QL ET MD   R LLRV+
Sbjct: 723 KRKEQFV---ADFREAMQWLRSEAERGISKQRYKGLGEMNPEQLWETTMDPTVRRLLRVK 779

Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           I   +       +    LMG   + R  FI+  A    ++  
Sbjct: 780 IEDAI----AADEIFTTLMGDDVEPRRAFIETHALSASNIDA 817


>gi|46200851|ref|ZP_00207872.1| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), B subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 816

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 216/575 (37%), Positives = 330/575 (57%), Gaps = 15/575 (2%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVI 90
           +   A+ + ++ Y A SI++L GLE VR RPGMYIG TD+   LH +  E +DNA+DE++
Sbjct: 9   NDPNASANGAEEYGAGSIQVLRGLEAVRKRPGMYIGDTDDGSGLHRMIYEAVDNAVDEIM 68

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
            G+ +  +V L+ +G + V DNGRGIPV+ HP+    S  E+ LT LHAGGKF+ ++  I
Sbjct: 69  NGFGDRCDVVLNADGSVLVTDNGRGIPVDIHPE-EGISAAEVALTKLHAGGKFEQNSNRI 127

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           S GLHGVGISVVNALS+ L + + R       +F  G P +PL    +   + GT++ F 
Sbjct: 128 SSGLHGVGISVVNALSEWLELRIWRHGKEHFMRFRHGEPEAPLAVVGECGTRTGTQVVFF 187

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P    F     FD   +    +  A+L+ R       ++     +    +   ++ GG++
Sbjct: 188 PSKGTFS-HTEFDFDTVEHRLRELAFLNWRATLTLKDER-----HAETREAVLHYEGGVQ 241

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330
            ++Q    ++  + + I             ++EW  ++ E       + N +   +GGTH
Sbjct: 242 AFVQWLDRSKEALHAPILVAAERDVVRLELSMEWTDSYHET---CLCFTNNVPQKDGGTH 298

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  YA  +    K  +++  DD+      +LS+ + +P+F+ Q K KLV
Sbjct: 299 LAGFRAALTRTVNAYANDSGIAKKEKVNLAGDDMREGLTCVLSIKMPDPKFSSQAKEKLV 358

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKL 447
           S + +  VEN + +    +  ++P EA K++  V+E +  R   RK RE+ R+   +   
Sbjct: 359 SSEVRPLVENLVGEKLAEWFEEHPSEARKIVTKVVEAAAAREAARKARELTRRKGVLDIA 418

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR+NQA+LPL+GKILNV  A  +K+
Sbjct: 419 TLPGKLADCQERDPALSELFIVEGDSAGGSAKQGRNRANQAILPLKGKILNVERARFDKM 478

Query: 508 RNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
            ++ +I  L+ A+G     +    +  RY K+IIMTDADVDG+HI +LLLTFFY++M  L
Sbjct: 479 LSSAEIGTLIAAMGTGIGREDFNVDKARYHKIIIMTDADVDGSHIRTLLLTFFYRQMPAL 538

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           IE+ +L++  PPL+R  +G   VY  D+   ++ L
Sbjct: 539 IERGYLYIAQPPLYRAKRGQSEVYLKDDRALEEYL 573



 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            ++    + G+  I I R+KGLGEM   QL ET +D   R+LL+V++        D +  
Sbjct: 733 ALVTAVMEQGRRGIAIQRYKGLGEMNPEQLWETTLDPQARSLLQVKV----AQADDAEQV 788

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            + LMG   + R +FIQ  A  + ++ 
Sbjct: 789 FSTLMGDVVEPRREFIQTNALKVSNLD 815


>gi|291276246|ref|YP_003516018.1| DNA gyrase subunit B [Helicobacter mustelae 12198]
 gi|290963440|emb|CBG39269.1| DNA gyrase subunit B [Helicobacter mustelae 12198]
          Length = 772

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 225/565 (39%), Positives = 333/565 (58%), Gaps = 17/565 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y AS+I++L+GLE VR RPGMYIG T+   LHH+  EV+DN++DE +AG+ + I+++L
Sbjct: 4   KDYGASNIKVLKGLEAVRKRPGMYIGDTNVNGLHHMIYEVVDNSIDEAMAGHCSQIKITL 63

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   + D+GRGIPV+ HP         ++LT LHAGGKFD  TY++SGGLHGVG+SV
Sbjct: 64  TQEGSAIIEDDGRGIPVDMHP-TEKLPAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 122

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  L +T+ +   I+ Q+F++GIP + LE   K +   GT I F PD ++      
Sbjct: 123 VNALSKRLIMTIKKNGYIYRQEFAKGIPQTDLEIIGKTKEH-GTTIEFFPDGEVME-ILE 180

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FDA  L+K  +  AYL+  V   +  +K          ++ F+F  GL  +++   + + 
Sbjct: 181 FDAEILIKRFKEMAYLNQNVTLFFKEEK-------TGREQVFHFENGLHQFVEDMNK-KP 232

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
            IS  I     E+       + +   +   + ++ S+ N I T +GGTHE+G R  L+R 
Sbjct: 233 FISPIISFKANEEDTEIEIALAYNEGY---DEKVLSFVNNIRTPDGGTHEAGFRAGLSRA 289

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  Y E      ++   I  +D+    V I+S  I EP+F GQTK KL S   +  V+  
Sbjct: 290 ILNYIEANASAREKDAKIQGEDVREGLVAIISAKIMEPQFEGQTKGKLGSSFVKPIVQKL 349

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
             +    +  +NP EA K+++  +  +  R   +K RE   +K ++    LPGKLADC  
Sbjct: 350 TFEKLAKFFEENPNEAKKIMQKALLAARGREAAKKARELTRKKDSLSVGTLPGKLADCQS 409

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  +  +KI  + +I +++ 
Sbjct: 410 KDPRESEIYLVEGDSAGGSAKQGRDRVYQAILPLRGKILNVEKSRLDKILKSDEIKNMIT 469

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A GC    ++  E LRY K+IIMTDADVDG+HI +LL+TFFY+ +  LIE  H+++  PP
Sbjct: 470 AFGCGIGEEFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLKPLIENGHIYIAQPP 529

Query: 579 LFRITQGTKSVYAHDEEHKQKILEE 603
           L+R  +G K +Y  DE+   + L E
Sbjct: 530 LYRFKKGKKEIYLKDEKALSEYLIE 554



 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 4/91 (4%)

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
                +LEE ++  K    I R+KGLGEM   QL ET M  + RTLL+V     L   + 
Sbjct: 685 RDLIDLLEEIEESAKKGAYIQRYKGLGEMNPEQLWETTMTPSNRTLLKV----ALEDEES 740

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
             +     MG + + R  +IQE A  +  + 
Sbjct: 741 ADEIFTLFMGDEVEPRRAYIQENAKNVKHLD 771


>gi|46578420|ref|YP_009228.1| DNA gyrase subunit B [Desulfovibrio vulgaris str. Hildenborough]
 gi|120601056|ref|YP_965456.1| DNA gyrase, B subunit [Desulfovibrio vulgaris DP4]
 gi|46447831|gb|AAS94487.1| DNA gyrase, B subunit [Desulfovibrio vulgaris str. Hildenborough]
 gi|120561285|gb|ABM27029.1| DNA gyrase subunit B [Desulfovibrio vulgaris DP4]
 gi|311232352|gb|ADP85206.1| DNA gyrase, B subunit [Desulfovibrio vulgaris RCH1]
          Length = 798

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 217/567 (38%), Positives = 323/567 (56%), Gaps = 21/567 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY A SI ILEGL  VR RP MYIG TD + LHHL  EV+DN++DE +AG+ + + V L
Sbjct: 7   NNYTADSITILEGLSAVRKRPAMYIGSTDARGLHHLVYEVVDNSIDEAMAGFCSKVVVKL 66

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  +TV DNGRGIPV+ HPK   +  +E+++T LHAGGKFDN+ Y++SGGLHGVG+S 
Sbjct: 67  HLDNSVTVSDNGRGIPVDMHPK-EGRPAVEVVMTKLHAGGKFDNNAYKVSGGLHGVGVSC 125

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+ L V V R    + Q+++RG+P   L          GT + F+PD +IF     
Sbjct: 126 VNALSEWLEVRVKRDGQRYGQRYARGVPQEDLRVLG-ASEGHGTTVRFKPDEEIFET-NQ 183

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F    L K  +  +YL+  ++  +  ++         E   F+  GG++ +++      +
Sbjct: 184 FSYETLRKRFEELSYLNRGLEIEFIDERS-------GESHTFFAEGGIRQFVKDLNSGET 236

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I      G+ +  G     V++A+ +       + ++ N I T EGGTH +G + ALTR
Sbjct: 237 GIHPI-VAGEGKTDGV---VVDFALQYNAGYKENVLTFANNIRTKEGGTHLAGFKTALTR 292

Query: 341 GIKKYAEL----TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
            I  Y +     T+  +  ++  DD+      ++SV + +P+F GQTKTKL + +    V
Sbjct: 293 AINGYVKGQADLTKKMKGTALSGDDVREGLTAVVSVKLPQPQFEGQTKTKLGNSEIAGIV 352

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
              + D  + +  +NP +   +++  ++ +  R   R+ +E V RK A+    LPGKLAD
Sbjct: 353 AGIVYDRLNVHFEENPKDVRLIIDKAVDAARARDAARRAKELVRRKGALSDNALPGKLAD 412

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C       +ELFIVEGDSAGGSAKQ R+ S QA+LPLRGKILN      +K+  N+++  
Sbjct: 413 CQSKDPALSELFIVEGDSAGGSAKQGRDPSTQAILPLRGKILNTERTRFDKMLANKEVKA 472

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+ A+G          + LRY K++IMTDADVDGAHI +LLLTFF+++   LIE  +L++
Sbjct: 473 LITAMGAGIGEDDTDYDKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQYQKLIESGYLYI 532

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKIL 601
             PPL+R        +  D+      L
Sbjct: 533 AQPPLYRAHNSRMERFIKDDAELNNFL 559



 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 4/80 (5%)

Query: 606 KHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT 665
           +  +  + I R+KGLGEM   QL  T M+   RTLL+V I       ++  D+  +LMG 
Sbjct: 722 EEARRGLNIQRYKGLGEMNPEQLWVTTMNPENRTLLQVSIED----AEEASDAFEQLMGD 777

Query: 666 KADERFKFIQERASFIDDVG 685
           + + R +FI   A  + ++ 
Sbjct: 778 RVEPRREFIVRNALAVQELD 797


>gi|3510605|gb|AAC33551.1| gyrase subunit B [Chlamydia trachomatis]
          Length = 796

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 223/574 (38%), Positives = 328/574 (57%), Gaps = 18/574 (3%)

Query: 45  DASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGN 104
            AS I +LEGL+ VR RPGMYIG T    LHHL  EV+DN++DE +AG+   + V +  +
Sbjct: 1   SASVITVLEGLQAVRERPGMYIGDTGVTGLHHLVYEVVDNSIDEAMAGFCTEVVVRILED 60

Query: 105 GFLTVVDNGRGIPVENHPKFP-----NKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           G +++ DNGRGIP++ H K         S LE++LT LHAGGKFD  +Y++SGGLHGVG+
Sbjct: 61  GGISISDNGRGIPIQIHEKESAKQGREISALEVVLTVLHAGGKFDKDSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           S VNALS++    V +    +S +FSRG PL+ L+      +KRGT + F PDP IF   
Sbjct: 121 SCVNALSEKFIAKVFKDGQAYSMEFSRGAPLTTLQVLGPT-DKRGTEVLFYPDPAIFSTC 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             FD A L+K  +  A+L+      +  D++        +K  F++ GG+++++    +N
Sbjct: 180 V-FDRAILMKRLRELAFLNRGATIVFEDDRD-----TGFDKVVFFYEGGIQSFVSYLNQN 233

Query: 280 RSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVA 337
           + ++       +  + G       E A+ W     E I SY N I T +GGTH +G   A
Sbjct: 234 KEILFPNPIYIQGSRPGDDGDIEFEAALQWNSGYSELIYSYANNIPTRQGGTHLTGFSTA 293

Query: 338 LTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y +     ++    +  +D+    V I+SV +  P+F GQTK KL + D    
Sbjct: 294 LTRAVNSYIKAHNLSKSDKLSLTGEDIKEGLVAIVSVKVPNPQFEGQTKQKLGNSDVGSV 353

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN-RKTAIRKLRLPGKLA 454
            +    +    +L +NP  A  +++ V   ++ R   ++ RE+  RK+A+   RLPGKL 
Sbjct: 354 SQQISGEVLTTFLEENPQIAKTIVDKVFVAAQAREAAKRARELTFRKSALDSARLPGKLI 413

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +      E++IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  +K+  NQ+I 
Sbjct: 414 DCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKVFQNQEIG 473

Query: 515 DLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            ++ ALGC           LRY+++IIMTDADVDG+HI +LLLTFFY+ M  LIE + ++
Sbjct: 474 SIIAALGCGIGKDNFNLSKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHMSALIENECVY 533

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607
           +  PPL+R+++     Y   E+     L      
Sbjct: 534 IAQPPLYRVSKKKDFRYILSEKEMDGYLLNLGTK 567



 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 9/97 (9%)

Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
            +     +++++  K  G+  IEI R+KGLGEM A QL +T M+  +RTL+RV +   + 
Sbjct: 706 CYT---LKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAV- 761

Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFI--DDVG 685
              +       LMG +   R +FI+  A  I  +++ 
Sbjct: 762 ---EADHIFTMLMGEEVPPRREFIKSHALSIRMNNLD 795


>gi|197106831|ref|YP_002132208.1| DNA gyrase, B subunit [Phenylobacterium zucineum HLK1]
 gi|196480251|gb|ACG79779.1| DNA gyrase, B subunit [Phenylobacterium zucineum HLK1]
          Length = 812

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 232/578 (40%), Positives = 335/578 (57%), Gaps = 22/578 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+A  +EV L
Sbjct: 19  EYGAESIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHATKVEVIL 78

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G  TV D+GRGIP + H +    S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SV
Sbjct: 79  NADGSCTVTDDGRGIPTDIH-EGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSV 137

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------RNKRGTRITFRPDPKI 215
           VNALSD L + V R       +F RG  ++PL    K           GT +TF P    
Sbjct: 138 VNALSDFLKLKVFRGGMQHEMEFRRGDAVAPLAVTGKAPLRDNGEFLTGTHVTFLPSTAT 197

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     FD   L    +  A+L+  V       +        P +E  ++ GG++ +++ 
Sbjct: 198 FR-FIEFDLKTLEHRLRELAFLNSGVTIWLKDLR-----GAEPFEEVMHYEGGIEAFVRH 251

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
             + +  +  E    +  K       V+ A+ W +   E    + N I   +GGTH +  
Sbjct: 252 LDKAKHPLMKEPIVVRGRKDTV---EVDMALWWNDGYHENVLCFTNNIPQRDGGTHLAAF 308

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR I  YAE +    +  +S+  +D       +LSV + +P+F+ QTK KLVS + 
Sbjct: 309 RSALTRIITNYAEQSGAAKREKVSVSGEDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEV 368

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
           +  VE  + +    +  ++P EA  +++ + E +  R   RK RE   RK+A+    LPG
Sbjct: 369 RPAVEGLVSEGLSTWFEEHPNEAKLIVQKITEAAAAREAARKARELTRRKSALDITSLPG 428

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +ELF+VEGDSAGGSAKQARNR NQA+LPLRGKILNV  A  +K+ ++ 
Sbjct: 429 KLADCQEKDPAKSELFLVEGDSAGGSAKQARNRENQAILPLRGKILNVERARFDKMLSSD 488

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           Q+  L+ ALG    R  +  E LRY K++IMTDADVDGAHI +LLLTFFY++M ++I++ 
Sbjct: 489 QVGTLITALGAGIGRDDFDIEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPEVIDRG 548

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +L++  PPL++ T+G  S Y  D+   +  L +    G
Sbjct: 549 YLYIAQPPLYKATKGKSSRYLKDDAELEAYLVDEGTDG 586



 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 4/84 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            ++    ++G+  + I R+KGLGEM   QL ET +DA+ RTLL+V++        D  D 
Sbjct: 730 DLVNAVMENGRRGLSIQRYKGLGEMNPEQLWETTLDADARTLLQVKVTH----ADDADDM 785

Query: 659 INKLMGTKADERFKFIQERASFID 682
             +LMG   + R +FIQE A   +
Sbjct: 786 FTRLMGDLVEPRREFIQENALDAE 809


>gi|332039318|gb|EGI75731.1| DNA gyrase subunit B [Hylemonella gracilis ATCC 19624]
          Length = 849

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 229/603 (37%), Positives = 328/603 (54%), Gaps = 46/603 (7%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           YD SSI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +AGY + I V++ 
Sbjct: 15  YDESSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGYCDDIVVTIH 74

Query: 103 GNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            +  ++V DNGRGIP          P +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+
Sbjct: 75  TDNSISVTDNGRGIPTGVKMDDKHEPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGV 134

Query: 160 SVVNALSDELHVTVARQNTIFSQKF------------SRGIPLSPLEKKEKVRNKRGTRI 207
           S VNALS  L +TV     +   +F              G+ +SP++   +    RGT +
Sbjct: 135 SCVNALSRWLRLTVRNGGKVHQLEFARGAVQSRLLTQQSGVDVSPMKVIGETEK-RGTEV 193

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F PD +IF     F    L K  +  ++L+  V+     ++   E         F   G
Sbjct: 194 HFLPDTEIFQQNHEFHYEILAKRLRELSFLNNGVRIRLKDERNGKEDD-------FSGAG 246

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGT-------HRGTVEWAIAWCEEN-PEITSYC 319
           G+K ++     N+ ++    F     +              VE A+ W +     +  + 
Sbjct: 247 GVKGFVDFINANKKVLHPNAFHAIGTRPADSYGGIPGTEIGVEVAMQWNDGYNESVLCFT 306

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH +GLR A+TR I KY E  +   K  + +  DD+      +LSV + EP
Sbjct: 307 NNIPQRDGGTHLTGLRAAMTRVIGKYIESNELAKKAKVEVTGDDMREGLCCVLSVKVPEP 366

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F+ QTK KLVS + +  VE+ +    + YL + P +A  L   ++E +  R   RK RE
Sbjct: 367 KFSSQTKDKLVSSEVRAPVEDIVAKALNDYLEERPNDAKTLCGKIVEAARAREAARKARE 426

Query: 438 VNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
           + R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGKI
Sbjct: 427 MTRRKGVLDGMGLPGKLADCQEKDPSLCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKI 486

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRT-----------RSQYREEDLRYEKVIIMTDAD 545
           LNV  A  EK+  + +I+ L+ ALG                 +  + LRY ++IIMTDAD
Sbjct: 487 LNVEKARYEKLLTSNEIVTLITALGTGIGKASSDSGKSGADDFNIDKLRYHRIIIMTDAD 546

Query: 546 VDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605
           VDGAHI +LLLTFFY++M +L+E+ H+++  PPL+++  G + +Y  D       L    
Sbjct: 547 VDGAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKSGKEELYLKDGSALDAYLLRIA 606

Query: 606 KHG 608
             G
Sbjct: 607 LAG 609



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 4/91 (4%)

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
              +  +       +      R+KGLGEM   QL ET MD   R LLRV+I+  +    +
Sbjct: 762 ADFRSAMAWLISEAERTTSRQRYKGLGEMNPGQLWETTMDPTVRRLLRVQIDDAI----E 817

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
                  LMG + + R  FI+  A    ++ 
Sbjct: 818 ADRVFTMLMGDEVEPRRDFIETNALRAGNID 848


>gi|315453774|ref|YP_004074044.1| DNA gyrase subunit B [Helicobacter felis ATCC 49179]
 gi|315132826|emb|CBY83454.1| DNA gyrase subunit B [Helicobacter felis ATCC 49179]
          Length = 766

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 227/565 (40%), Positives = 331/565 (58%), Gaps = 17/565 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y    I++L+GLE VR RPGMYIG T    LHH+  EV+DNA+DE +AG+ + I+V+L 
Sbjct: 3   SYMGDKIKVLKGLEAVRKRPGMYIGDTGVNGLHHMVYEVVDNAVDESMAGFCDHIKVTLS 62

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
             G   V DNGRGIPV+ HP         ++LT LHAGGKFD  +Y++SGGLHGVG+SVV
Sbjct: 63  QYGSCIVEDNGRGIPVDIHP-TEGIPAATVVLTILHAGGKFDQESYKVSGGLHGVGVSVV 121

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS +L +T+ R+  I+ Q+F +GIP +PLE     +  RGT I F PDP+I      F
Sbjct: 122 NALSIKLIMTIYREGQIYRQEFEKGIPTTPLEVVGTTKK-RGTTIEFFPDPEIMEVV-QF 179

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D+  L +  Q  AYL+ ++   +               E +++  GLK ++      ++ 
Sbjct: 180 DSGVLKRRFQEMAYLNNKITLEFHDQ-------PAQVHESYHYQDGLKQFI--IDTQKTP 230

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           + SEI     + +G     VE A+A+ E   E   S+ N I T EGGTHESG ++ L++ 
Sbjct: 231 LISEIIAFSAQVEG---MEVEVALAYNESYEEQTFSFVNNIRTIEGGTHESGFKMGLSKA 287

Query: 342 IKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
           I  Y + + ++   S++ +D+      I+S+ + +P+F GQTK KL S   +  +   + 
Sbjct: 288 ILSYIQESNSREGSSVVQEDVREGLSAIISLKLLDPQFEGQTKAKLGSSFVRPIIAKLVY 347

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNI 460
           +    Y  +NP  A  +++ V+  +  R   +K RE   +K ++    LPGKLADC    
Sbjct: 348 EKVAKYFEENPSIAKAIVQKVLLAARGREAAKKAREITRKKDSLSVGTLPGKLADCQSKD 407

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
               EL++VEGDSAGGSAKQ R+R+ QA+LPLRGKILNV  A   KI  +++I +++ A 
Sbjct: 408 PKECELYLVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKAHLGKILKSEEIKNMITAF 467

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           GC    ++  E LRY K+IIMTDADVDG+HI +LL+TFF++ +  LIE  H+++  PPL+
Sbjct: 468 GCGVGKEFNLEKLRYHKIIIMTDADVDGSHIQTLLMTFFFRHLKPLIEYGHVYIAQPPLY 527

Query: 581 RITQGTKSVYAHDEEHKQKILEEFK 605
           R  +     Y  DE      L E  
Sbjct: 528 RFKKKKIERYLRDERELNHFLIEHG 552



 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
             L + ++  K    I R+KGLGEM   QL ET M    R LLRV     L       ++
Sbjct: 683 DFLHKVEQSAKTGAYIQRYKGLGEMNPDQLWETTMALENRALLRV----ALEDEAKADEA 738

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            N LMG + + R ++I   A  +  + 
Sbjct: 739 FNLLMGDEVEPRREYIHTHAKDVKHLD 765


>gi|114326985|ref|YP_744142.1| DNA gyrase subunit B [Granulibacter bethesdensis CGDNIH1]
 gi|114315159|gb|ABI61219.1| DNA gyrase subunit B [Granulibacter bethesdensis CGDNIH1]
          Length = 810

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 217/580 (37%), Positives = 331/580 (57%), Gaps = 17/580 (2%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVI 90
           S        SD YDASSI +L GL+ VR RPGMYIG TD+   LHH+  E+IDNA+DE  
Sbjct: 2   SDPTPLPPDSDAYDASSISVLRGLDAVRKRPGMYIGDTDDGSGLHHMAFEIIDNAVDEAQ 61

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AG+A+ + ++L+G+G +TV D+GRGIP + H +    S  E++LT LHAGGKF+ ++Y++
Sbjct: 62  AGFASEVTLTLNGDGSVTVTDDGRGIPTDIHAE-EGISAAEVVLTRLHAGGKFNQNSYKV 120

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG +VVNALS+ + V + R+      +F  G   +PL +        GT++TF+
Sbjct: 121 SGGLHGVGAAVVNALSEWMEVRIWREGREHFIRFRHGDAEAPLVEIGPSPRGSGTQVTFK 180

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P    F     F+ A L +  +  A+L+  +K     ++     +   ++  F + GGL 
Sbjct: 181 PSNLTFTRV-EFEFATLERRLRELAFLNSGLKIVLRDER-----HVPAQESVFCYEGGLT 234

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
            +++     +  +     +             VE+++ W +     +  + N I   +GG
Sbjct: 235 AFVEWLDRGKVALFDPPISAAGSANADQGDIKVEFSLVWNDSFHETMLCFTNNIPQRDGG 294

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           TH +G R ALTR + KYAE    K  ++++ +D+      +LSV + +P+F+ QTK KLV
Sbjct: 295 THLAGFRQALTRVVSKYAEGLGKKEQLALVGEDMREGMTAVLSVKVPDPKFSSQTKEKLV 354

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKL 447
           S + Q  V  A+ D   H+   +P E   +++  ++ +  R   R+ RE+ R+   +   
Sbjct: 355 SSEVQPVVHAAVADAIGHWFETHPKETRSIIQKAMDAASAREAARRARELTRRKGVLDIS 414

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +      E+FIVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +++
Sbjct: 415 SLPGKLADCQERDPSKCEIFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDRM 474

Query: 508 RNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
             + +I  L+ ALG         +  +    LRY +++IMTDADVDG+HI +LLLTFF++
Sbjct: 475 LGSAEIGTLITALGTGIGRGEPEQGGFDIAKLRYHRIVIMTDADVDGSHIRTLLLTFFFR 534

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +M  L    HL++  PPLF+ T+G    Y  DE   ++ L
Sbjct: 535 QMPQLFTNGHLYIAQPPLFKATRGKDERYLKDERALEEYL 574



 Score =  123 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +LE    HG+  +   RFKGLGEM   QL  T +D   RTLL+V++      ++D    
Sbjct: 727 SVLERILAHGRKGLSFQRFKGLGEMNPEQLWSTTLDPATRTLLQVKVGD----IEDAGQI 782

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            + LMG   + R  FI   A  + ++ 
Sbjct: 783 FSTLMGDVVEPRRDFIVGNALKVANLD 809


>gi|34556461|ref|NP_906276.1| DNA gyrase subunit B [Wolinella succinogenes DSM 1740]
 gi|34482175|emb|CAE09176.1| DNA GYRASE SUBUNIT B [Wolinella succinogenes]
          Length = 772

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 226/566 (39%), Positives = 339/566 (59%), Gaps = 19/566 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y A +I++L+GLE VR RPGMYIG T+   LHHL  EV+DN++DE +AG+ N I ++L
Sbjct: 4   QQYSADNIKVLKGLEAVRKRPGMYIGDTNVNGLHHLIYEVVDNSIDEAMAGHCNTISITL 63

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   + DNGRGIPV+ HP   N     ++LT LHAGGKFD  +Y++SGGLHGVG+SV
Sbjct: 64  TKEGSAIIEDNGRGIPVDMHP-TENLPAATVVLTVLHAGGKFDKDSYKVSGGLHGVGVSV 122

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS +L +T+ +   +++Q+FS GIP + L+       K GT I F PD +IF     
Sbjct: 123 VNALSKKLVMTIRKNGNVYTQEFSCGIPKTGLDIIG-TSKKNGTTIEFIPDDEIFEVTV- 180

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L +  +  AYL+  +   +  +++          E ++F GGL+ +++    N+ 
Sbjct: 181 FDREVLARRFKELAYLNRNITIHFKDERDNFN-------ESYHFEGGLRQFVEHL--NKK 231

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
           ++ S++F+            VE A+A+ +    ++ S+ N I T EGGTHE+G R  L+R
Sbjct: 232 VLVSQVFSFS---DNESDTEVEIALAYNDGYDEKVLSFVNNIKTPEGGTHEAGFRAGLSR 288

Query: 341 GIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  Y +   N  ++   I  DD+    V I+SV + EP+F GQTK KL S   +  V+ 
Sbjct: 289 AITSYIDANANAREKDNKITGDDVREGLVAIVSVKVMEPQFEGQTKGKLGSSFVKPIVQK 348

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
              +    +  +NP +A  +++  +  +  R   +K RE   +K ++    LPGKLADC 
Sbjct: 349 LTYEKIAKFFEENPNDAKAIMQKALMAARGREAAKKARELTRKKDSLMVGTLPGKLADCQ 408

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  +  +KI  + +I +++
Sbjct: 409 SKDPSISELYLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSRLDKILKSDEIKNMI 468

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALGC    ++    +RY+K+IIMTDADVDG+HI +LLLTFF++ +  +IE  +L++  P
Sbjct: 469 TALGCGIGEEFDINRIRYQKIIIMTDADVDGSHIQTLLLTFFFRYLKPVIEAGYLYIAQP 528

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEE 603
           PL+R  +G K +Y  DE+   + L E
Sbjct: 529 PLYRFKKGKKEIYLRDEKALSEYLIE 554



 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 4/99 (4%)

Query: 587 KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646
           + +    E+    ILEE ++  K    I R+KGLGEM   QL ET M    R LL+V+I 
Sbjct: 677 RDLSFLGEKDILTILEEIEESAKKGAYIQRYKGLGEMNPEQLWETTMTPENRRLLKVQIT 736

Query: 647 KDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            D+    +  D  +  MG + + R  +IQ+ A  +  + 
Sbjct: 737 DDM----EASDVFSLFMGDEVEPRRAYIQDHAKDVKHLD 771


>gi|15836610|ref|NP_297298.1| DNA gyrase subunit B [Xylella fastidiosa 9a5c]
 gi|9104765|gb|AAF82818.1|AE003855_5 DNA gyrase subunit B [Xylella fastidiosa 9a5c]
          Length = 814

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 229/571 (40%), Positives = 342/571 (59%), Gaps = 18/571 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           YD+S I +L GL+ VR RPGMYIG   D   LHH+  EV+DN++DE +AG+A+ I V + 
Sbjct: 16  YDSSKITVLRGLDAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDEALAGHADSILVKIH 75

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G ++V DNGRGIPV+ H K    S  E+ILT LHAGGKFD+++Y++SGGLHGVG+SVV
Sbjct: 76  VDGSVSVSDNGRGIPVDIH-KEEGVSAAEVILTVLHAGGKFDDNSYKVSGGLHGVGVSVV 134

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+ L + + R    + Q++  G P  PL++   V  KRGT + F+P  +IF D   F
Sbjct: 135 NALSERLWLDIWRDGYHYQQEYVLGEPQYPLKQLG-VSAKRGTTLRFKPAKEIFSDV-EF 192

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  ++L+  ++     ++          +++F++ GG++++++   + ++ 
Sbjct: 193 HYENLAKRLRELSFLNSGLQVSLIDERG------EGRRDDFHYEGGIRSFVEHLAQLKTP 246

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           + S + +   E  G     V+ A+ W +     +  + N I   +GGTH +G R ALTR 
Sbjct: 247 LHSNVISVTGEHNGI---VVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRAALTRT 303

Query: 342 IKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +  Y E     R   I    DD+    + +LSV + EP F+ QTK KLVS D +  VE  
Sbjct: 304 LGNYIEQNGIARQAKITFSGDDMREGMIAVLSVKVPEPSFSSQTKEKLVSSDVKPAVEAT 363

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458
                + +L +NP EA  +   +++ +  R   RK R++ R+   +    LPGKLADC +
Sbjct: 364 FGLRLEEFLQENPNEARAIAGKIVDAARAREAARKARDLTRRKGVLDIAGLPGKLADCQE 423

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +ELFIVEGDSAGGSAKQ RNR NQAVLPLRGKILNV  A  +++ ++ ++  L+ 
Sbjct: 424 KDPAMSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLSSAEVGTLIT 483

Query: 519 ALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
           ALG    + +Y  + LRY ++IIMTDADVDG+HI +LLLTFFY++M +LIE+ H+++  P
Sbjct: 484 ALGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIGLP 543

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           PL+++ QG   +Y  D+      L      G
Sbjct: 544 PLYKLKQGKSELYLKDDIALNVYLANSAVEG 574



 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 11/107 (10%)

Query: 581 RITQGTKSVY--AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           +I +GTKS       +      L E  K G+   +I RFKGLGEM   QL +T ++ + R
Sbjct: 716 KIVRGTKSQSIECFGDAQ--AWLLEDAKKGR---QIQRFKGLGEMNPEQLWDTTVNPDTR 770

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            LL+V I   +          + LMG   + R  FI+  A  +  + 
Sbjct: 771 RLLQVCIEDGI----AADQIFSTLMGDVVEPRRGFIENNALKVTRLD 813


>gi|189183732|ref|YP_001937517.1| DNA gyrase subunit B [Orientia tsutsugamushi str. Ikeda]
 gi|189180503|dbj|BAG40283.1| DNA gyrase subunit B [Orientia tsutsugamushi str. Ikeda]
          Length = 807

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 238/574 (41%), Positives = 338/574 (58%), Gaps = 14/574 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
               +  D Y+A SI+IL GLE VR+RPGMYIG       LH L  EV+DN+ DE +AG 
Sbjct: 7   MPTNTKLDQYNADSIKILRGLEAVRVRPGMYIGDISNGSGLHQLIYEVLDNSTDESLAGG 66

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
            N IEV+L+ NG +TV DNGRGIPV+ H +    S  ++I+T LHAGGKFD + Y++SGG
Sbjct: 67  CNKIEVTLNKNGSVTVRDNGRGIPVDIHQE-EGVSAAQVIMTQLHAGGKFDQNAYKVSGG 125

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALSD L + + + N     +F+ G P +PL    +  NK+GT ITF P  
Sbjct: 126 LHGVGVSVVNALSDWLELRIWKNNQEHFMRFNNGEPQNPLSIVGEAPNKQGTEITFYPSI 185

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF     F  + L    +  A+L+  V+   + ++    K        F++ GG+++Y+
Sbjct: 186 AIFTSV-EFSFSELEHRLRELAFLNSSVEFSLTDERSSEVKDVK-----FFYTGGVESYV 239

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHES 332
           Q   + ++ + S I   +T+  G    T+E A+ W +     I  + N I   +GG+H  
Sbjct: 240 QYIDKAKAALHSTISFHQTDSHG---ATLELAMQWNDSFYENIVCFTNNIRQRDGGSHLQ 296

Query: 333 GLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           G R A+TR I KY +    K  I+   DD+      +LS+ + +P+FA QTK KLVS +A
Sbjct: 297 GYRSAVTRAITKYTKDHFPKNNINYNGDDIREGLSCVLSLKLPDPKFASQTKDKLVSPEA 356

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
           +  VE  + +    +L   P E  K++  + E +  R   RK RE   RK+A+    LPG
Sbjct: 357 RAIVEGIVYEKLVEWLEHRPSEGKKIIAKITESALAREAARKARELTRRKSALGVANLPG 416

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC Q     +ELFIVEGDSAGG+AKQ RNR  QA+LPLRGK+LNV  A  +K+  + 
Sbjct: 417 KLADCQQRAPEKSELFIVEGDSAGGTAKQGRNRKFQAILPLRGKVLNVERARFDKMLQSD 476

Query: 512 QIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           QI  L+ ALG    S     + +RY KV+IMTDADVDG+HI +LLLTFFY+ M  +IE+ 
Sbjct: 477 QIGTLITALGTGIGSDDFAIDKIRYHKVVIMTDADVDGSHIRALLLTFFYRYMPTVIEKG 536

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           +L++  PPL++I +G   +Y  +++     L + 
Sbjct: 537 YLYIAQPPLYKIKRGANELYLKNDQALYDYLLKI 570



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L++    GK  + I RFKGLGEM + QL ET +D   RTLL+V+I        + ++ 
Sbjct: 724 ALLDKLLAIGKHGMSIQRFKGLGEMNSDQLWETTLDPENRTLLQVKITD----FDEAEEV 779

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            + LM    + R +FIQ  A  ++++ 
Sbjct: 780 FSTLMSNIVEPRREFIQANALNVNNLD 806


>gi|315497055|ref|YP_004085859.1| DNA gyrase, b subunit [Asticcacaulis excentricus CB 48]
 gi|315415067|gb|ADU11708.1| DNA gyrase, B subunit [Asticcacaulis excentricus CB 48]
          Length = 815

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 229/584 (39%), Positives = 333/584 (57%), Gaps = 26/584 (4%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
            +   + Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+A 
Sbjct: 8   PEVVENAYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAT 67

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            +EV L+ +G  +V D+GRG+PV+ H +    S  E+I+T LHAGGKFD ++Y++SGGLH
Sbjct: 68  RVEVILNADGSCSVSDDGRGMPVDIHAE-EGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 126

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------RNKRGTRITF 209
           GVG+SVVNALSD + + + R       +F  G  +  +E               GT +TF
Sbjct: 127 GVGVSVVNALSDYVELKIFRNGKTHEARFELGETVRSVEVTGDAPLRENGNPLTGTIVTF 186

Query: 210 RPDPKIFGD-----KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
            P  K   D        FD   L    +  A+L+  V   ++  +E       P     +
Sbjct: 187 LPSLKTGPDQGTFTFIDFDRKTLEHRLRELAFLNSGVHIRFADLREA-----EPYDIILH 241

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++   +++S I  E    +  +       V+ A+ W +     +  + N I 
Sbjct: 242 YEGGIVEFVKHLDKSKSPIIKEPIDARGLRDKV---EVDLALQWNDSYHETMLCFTNNIP 298

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +  R ALTR +  Y E +    K  +S+  +D       +LSV + +P+F+ 
Sbjct: 299 QRDGGTHLAAFRGALTRVMSAYMESSGLAKKEKVSVSGEDAREGLTCVLSVKVPDPKFSS 358

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTK KLVS + +  VE  + +    +  +NP+EA +++  +IE +  R   RK RE   R
Sbjct: 359 QTKDKLVSSEVRPAVEGIVFEKLSQWFEENPVEAKQIVSKIIEAAAAREAARKARELTRR 418

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR NQA+LPLRGKILNV 
Sbjct: 419 KSALDINSLPGKLADCQERDPAKSELFIVEGDSAGGSAKQGRNRENQAILPLRGKILNVE 478

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
            A  +K+ +++ I  L+ ALG    R  +  E LRY K+IIMTDADVDGAHI +LLLTFF
Sbjct: 479 RARFDKMLSSEMIGTLITALGTGIGRDDFNIEKLRYHKIIIMTDADVDGAHIRTLLLTFF 538

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEE 603
           Y++M  +IE  +L++  PPL+++ +G  S Y  D       L E
Sbjct: 539 YRQMPQIIENGYLYIAQPPLYKVAKGKSSRYLKDNTEMDAFLIE 582



 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 4/84 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            ++      G+  + I R+KGLGEM   QL ET +D + RTLL+V++N       +  D 
Sbjct: 733 DLVAAVLDAGRKGLSIQRYKGLGEMNPDQLWETTLDKDARTLLQVKVN----LTDEADDL 788

Query: 659 INKLMGTKADERFKFIQERASFID 682
             KLMG   + R +FIQ+ A   +
Sbjct: 789 FVKLMGDLVEPRREFIQDNALDAE 812


>gi|183238622|gb|ACC60952.1| DNA gyrase subunit B [Mycoplasma feliminutum]
          Length = 549

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 226/562 (40%), Positives = 330/562 (58%), Gaps = 16/562 (2%)

Query: 68  GTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNK 127
            T +K LHHL  E++DN++DE +AG+A  ++V +  + ++ V D+GRGIPV+ HPK  NK
Sbjct: 1   STGKKGLHHLVYEIVDNSIDEALAGFATRVDVEILKDNYIRVKDDGRGIPVDIHPK-TNK 59

Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187
           +T+E +LT LHAGGKF+N  Y++SGGLHGVG SVVNALS  L V V R    + Q++S G
Sbjct: 60  TTVETVLTVLHAGGKFNNDAYKVSGGLHGVGASVVNALSSYLKVEVFRDGFYYYQEYSIG 119

Query: 188 IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247
            P   L+K E      GT ITF+PD  IF +   F+   L +  Q  A+L+  +      
Sbjct: 120 KPTIELKK-EPSNLSNGTIITFKPDVDIFKETTEFEYDILKQRLQQLAFLNKGLIITLKD 178

Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307
            +        P ++ F + GGL  Y+    + +  ++ E    +  +       VE A+ 
Sbjct: 179 QR-----QEQPIEDTFVYSGGLLEYVNFLNKGKETLNKEPIYIEKTENDI---NVEIALL 230

Query: 308 WCEENP-EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMIS 365
           +  E    I S+ N I T EGG HE G ++AL+R I +Y       K+A  I  +D    
Sbjct: 231 YNNEFKANIFSFANNIATPEGGMHEDGFKMALSRIINRYGNNNNLFKKAEQITGEDTREG 290

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
            V ++SV +++PEF GQTK+KL + + +  V N   +  + YL++NP EA  ++E +I  
Sbjct: 291 LVCVISVKLKQPEFEGQTKSKLGNPEVKPLVSNIFGEQLERYLMENPQEAKLIIEKIILA 350

Query: 426 SEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           S  R   RK RE  R+ + +  L    KL+DC    A   ELFIVEGDSAGGSAKQ R+ 
Sbjct: 351 SNARNAARKAREATRRKSPLDTLGFASKLSDCRTKNADIAELFIVEGDSAGGSAKQGRDS 410

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA+LPLRGK+LNV  A  +K+  N ++  L+ ALGC    ++     RY+K++IMTDA
Sbjct: 411 KIQAILPLRGKVLNVEKAREDKVYANNELKSLIMALGCGIGDEFDASKTRYKKIVIMTDA 470

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           DVDGAHI +LLLTFF++ M D+I++ +L++  PPLF+I+ G K  Y + ++  +K L+E 
Sbjct: 471 DVDGAHIRTLLLTFFFRYMKDIIQKGYLYIAQPPLFKISSGKKIKYVYTDQELEKELKEL 530

Query: 605 KKHGKGKIEISRFKGLGEMLAS 626
                 +  + R+KGLGEM   
Sbjct: 531 ---NDQRYNLQRYKGLGEMNPE 549


>gi|71275531|ref|ZP_00651817.1| DNA gyrase, B subunit [Xylella fastidiosa Dixon]
 gi|71900178|ref|ZP_00682318.1| DNA gyrase, B subunit [Xylella fastidiosa Ann-1]
 gi|170729255|ref|YP_001774688.1| DNA gyrase subunit B [Xylella fastidiosa M12]
 gi|71163831|gb|EAO13547.1| DNA gyrase, B subunit [Xylella fastidiosa Dixon]
 gi|71730067|gb|EAO32158.1| DNA gyrase, B subunit [Xylella fastidiosa Ann-1]
 gi|167964048|gb|ACA11058.1| DNA topoisomerase (ATP-hydrolyzing) [Xylella fastidiosa M12]
          Length = 814

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 230/571 (40%), Positives = 343/571 (60%), Gaps = 18/571 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           YD+S I +L GL+ VR RPGMYIG   D   LHH+  EV+DN++DE +AG+A+ I V + 
Sbjct: 16  YDSSKITVLRGLDAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDEALAGHADSILVKIH 75

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G ++V DNGRGIPV+ H K    S  E+ILT LHAGGKFD+++Y++SGGLHGVG+SVV
Sbjct: 76  VDGSVSVSDNGRGIPVDIH-KEEGVSAAEVILTVLHAGGKFDDNSYKVSGGLHGVGVSVV 134

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+ L + + R    + Q++  G P  PL++  +V  KRGT + F+P  +IF D   F
Sbjct: 135 NALSERLWLDIWRDGYHYQQEYVLGDPQYPLKQL-EVSAKRGTTLRFKPAKEIFSDV-EF 192

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  ++L+  +K     ++          +++F++ GG++++++   + ++ 
Sbjct: 193 HYENLAKRLRELSFLNSGLKVSLIDERG------EGRRDDFHYEGGIRSFVEHLAQLKTP 246

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           + S + +   E  G     V+ A+ W +     +  + N I   +GGTH +G R ALTR 
Sbjct: 247 LHSNVISVTGEHNGI---VVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRAALTRT 303

Query: 342 IKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +  Y E     R   I    DD+    + +LSV + EP F+ QTK KLVS D +  VE  
Sbjct: 304 LGNYIEQNGIARQAKITFSGDDMREGMIAVLSVKVPEPSFSSQTKEKLVSSDVKPAVEAT 363

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458
                + +L +NP EA  +   +++ +  R   RK R++ R+   +    LPGKLADC +
Sbjct: 364 FGLRLEEFLQENPNEARAIAGKIVDAARAREAARKARDLTRRKGVLDIAGLPGKLADCQE 423

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +ELFIVEGDSAGGSAKQ RNR NQAVLPLRGKILNV  A  +++ ++ ++  L+ 
Sbjct: 424 KDPAMSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLSSAEVGTLIT 483

Query: 519 ALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
           ALG    + +Y  + LRY ++IIMTDADVDG+HI +LLLTFFY++M +LIE+ H+++  P
Sbjct: 484 ALGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIGLP 543

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           PL+++ QG   +Y  D+      L      G
Sbjct: 544 PLYKLKQGKSELYLKDDIALNVYLANSAVEG 574



 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 11/107 (10%)

Query: 581 RITQGTKSVY--AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           +I +GTKS       +      L E  K G+   +I RFKGLGEM   QL +T ++ + R
Sbjct: 716 KIVRGTKSQSIECFGDAQ--AWLLEEAKKGR---QIQRFKGLGEMNPEQLWDTTVNPDTR 770

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            LL+V I   +          + LMG   + R  FI+  A  +  + 
Sbjct: 771 RLLQVCIEDGI----AADQIFSTLMGDVVEPRRGFIENNALKVTRLD 813


>gi|325922762|ref|ZP_08184496.1| DNA gyrase subunit B [Xanthomonas gardneri ATCC 19865]
 gi|325546758|gb|EGD17878.1| DNA gyrase subunit B [Xanthomonas gardneri ATCC 19865]
          Length = 814

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 229/580 (39%), Positives = 339/580 (58%), Gaps = 18/580 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGY 93
               + +  YD+S I +L GLE VR RPGMYIG   D   LHH+  EV+DN++DE +AG+
Sbjct: 6   NTPTTPNSTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDEALAGH 65

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ I V +  +G + V DNGRG+PV+ H K    S  E+ILT LHAGGKFD+++Y++SGG
Sbjct: 66  ADDIVVKILVDGSVAVSDNGRGVPVDIH-KEEGVSAAEVILTVLHAGGKFDDNSYKVSGG 124

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS+ L + + R    + Q+++ G P  PL++ E     RGT + F+P  
Sbjct: 125 LHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQLEASTK-RGTTLRFKPAV 183

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF D   F    L +  +  ++L+  VK     ++          +++F++ GG+++++
Sbjct: 184 AIFSDV-EFHYDILARRLRELSFLNSGVKIALIDERG------EGRRDDFHYEGGIRSFV 236

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   + +S +   + +   E  G     V+ A+ W +     +  + N I   +GGTH +
Sbjct: 237 EHLAQLKSPLHPNVISVTGEHNGI---VVDVALQWTDAYQETMYCFTNNIPQKDGGTHLA 293

Query: 333 GLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR +  Y E     +   +    DD+    + +LSV + +P F+ QTK KLVS 
Sbjct: 294 GFRAALTRVLSNYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSS 353

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRL 449
           D +  VENA       +L +NP EA  +   +++ +  R   RK      RK A+    L
Sbjct: 354 DVRPAVENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGL 413

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +ELFIVEGDSAGGSAKQ RNR NQAVLPLRGKILNV  A  +++  
Sbjct: 414 PGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLA 473

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           + Q+  L+ ALG    R +Y  + LRY ++I+MTDADVDG+HI +LLLTFFY++M +LIE
Sbjct: 474 SDQVGTLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIE 533

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           + ++++  PPL+++ QG   +Y  D+      L      G
Sbjct: 534 RGYIYIGLPPLYKLKQGKSELYLKDDAALNAYLASNAVEG 573



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G K+            L E  K G+   ++ RFKGLGEM A QL ET ++ + R LL
Sbjct: 717 IVRGNKTHPITSFAQAHAWLLEEAKKGR---QVQRFKGLGEMNAEQLWETTVNPDTRRLL 773

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +          + LMG   + R  FI++ A  + ++ 
Sbjct: 774 QVRIEDAV----AADQIFSTLMGDVVEPRRDFIEDNALKVSNLD 813


>gi|293602697|ref|ZP_06685138.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Achromobacter
           piechaudii ATCC 43553]
 gi|292818888|gb|EFF77928.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Achromobacter
           piechaudii ATCC 43553]
          Length = 815

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 223/580 (38%), Positives = 341/580 (58%), Gaps = 16/580 (2%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVI 90
           S      S +  Y A SI++L+GLE VR RPGMYIG T D   LHH+  EV+DNA+DE +
Sbjct: 2   SDQQNTTSENSGYGADSIKMLKGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEAL 61

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFP-NKSTLEIILTTLHAGGKFDNSTYE 149
           AG+ + I V++  +  ++V DNGRGIP + H     ++S  EI++T LHAGGKFD ++Y+
Sbjct: 62  AGHCDDIVVTIHTDNSISVTDNGRGIPTDIHKDDEFHRSAAEIVMTELHAGGKFDQNSYK 121

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+S VNALS+ L +T+ R   +   +F +G  ++PL       + RGT + F
Sbjct: 122 VSGGLHGVGVSCVNALSEWLRLTIRRNGQVHQMEFRQGARVAPLAVTG-TTDMRGTEVRF 180

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
             DP I  +   +    L K  +  ++L+  VK      ++  E       E F F GG+
Sbjct: 181 LADP-IIFNNIEYHYEILSKRLRELSFLNNGVKIRLVDQRQGKE-------ENFAFSGGV 232

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           K +++     ++++   +F+  TE   G     VE A+ W +     +  + N I   +G
Sbjct: 233 KGFVEYINRAKTVLHPNVFSVSTESAAGGVSVGVEVAMQWNDSYSESVLCFTNNIPQRDG 292

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           G+H +GLR A+TR I KY    +   K  +    DD+      +LSV + EP+F+ QTK 
Sbjct: 293 GSHLTGLRAAMTRIINKYIADNELAKKAKVETSGDDMREGLACVLSVKVPEPKFSSQTKD 352

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-I 444
           KLVS + +  VE A+    + +L++NP +A  L   ++E +  R   RK RE+ R+ + +
Sbjct: 353 KLVSSEVRPAVEEAVARTLESWLLENPNDAKALCNKIVEAARAREAARKAREMTRRKSVL 412

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC +      EL+IVEGDSAGGSAKQ R+R  QA+LPLRGK+LNV  A  
Sbjct: 413 EGAGLPGKLADCQEKDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARF 472

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           +++  ++QI  L+ ALG      +  E LRY ++IIMTDADVDGAHI +LLLT  Y++M 
Sbjct: 473 DRLIASEQIATLITALGTSIGPDFNVEKLRYHRLIIMTDADVDGAHIRTLLLTLLYRQMP 532

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           +L+++ ++++  PPL+++  G +  Y  D++ + + + + 
Sbjct: 533 ELVQRGYVYIAQPPLYKVKVGREERYLKDDQEEAQFMLQL 572



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 4/91 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             ++ ++  +      I   R+KGLGEM   QL ET MD   R LLRV+I   +      
Sbjct: 729 DFREAMQWLRSEADRSISKQRYKGLGEMNPEQLWETTMDPKVRRLLRVQIEDAI----AA 784

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVGT 686
            +    LMG   + R  FI+  A    ++  
Sbjct: 785 DEVFTTLMGDDVEPRRAFIERNALSAGNIDA 815


>gi|319790697|ref|YP_004152337.1| DNA gyrase, b subunit [Variovorax paradoxus EPS]
 gi|315593160|gb|ADU34226.1| DNA gyrase, B subunit [Variovorax paradoxus EPS]
          Length = 873

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 229/628 (36%), Positives = 334/628 (53%), Gaps = 46/628 (7%)

Query: 15  QSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKA 73
                              A     A  +Y   SI ILEGLE VR RPGMYIG T D   
Sbjct: 6   NKPEVPHTEPVYTPEVQVVAPEVILADTSYGEGSITILEGLEAVRKRPGMYIGDTSDGTG 65

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTL 130
           LHHL  EV+DN++DE +AG+ + I V++  +  ++V DNGRGIP          P +S  
Sbjct: 66  LHHLVFEVVDNSIDEALAGHCDDIVVTIHSDNSISVTDNGRGIPTGVKMDDKHEPKRSAA 125

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP- 189
           EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS +L + V R+  I   +FSRG   
Sbjct: 126 EIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSIKLRLIVRREGKIHELEFSRGFVQ 185

Query: 190 -----------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLS 238
                      +SP++      +KRGT + F PD +IF +   F    L K  +  ++L+
Sbjct: 186 NRLLETVNGFEVSPMKIIGDT-DKRGTEVHFLPDTEIFKENNDFHYEILSKRLRELSFLN 244

Query: 239 GRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH 298
             V+     ++   E         F   GG++ +++   + ++++    F    EK    
Sbjct: 245 NGVRIRLLDERTGKEDD-------FSGAGGVRGFVEFINKGKTVLHPNSFYAAGEKPADT 297

Query: 299 RGT-------VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
            G        VE A+ W      ++  + N I   +GGTH +GLR A+TR I KY E  +
Sbjct: 298 YGGIPGTHIGVEVAMQWNSGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEENE 357

Query: 351 --NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
              K  + +  DD+      +LSV + EP+F+ QTK KLVS + +  VE+ +      YL
Sbjct: 358 FAKKAKVEVTGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVGRLLTDYL 417

Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELF 467
            + P +A  +   ++E +  R   RK RE+ R+   +  + LPGKLADC +      E++
Sbjct: 418 QERPNDAKIICGKIVEAARAREAARKAREMTRRKGVLDGMGLPGKLADCQEKDPALCEVY 477

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT--- 524
           +VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  EK+  + +I+ ++ ALG      
Sbjct: 478 LVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARYEKLLTSNEILTMITALGTGIGRA 537

Query: 525 --------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
                      +    LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ H+++  
Sbjct: 538 GATTAGGGADDFNVAKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGHIYIAQ 597

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEF 604
           PPL+++  G +  Y  D       L + 
Sbjct: 598 PPLYKVKVGKEEQYLKDGPALDAFLLKV 625



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 4/91 (4%)

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
           +  ++ ++      +      R+KGLGEM   QL ET MD   R LLRV+I+  +    +
Sbjct: 786 DDFRQAMKWLISEAERATSRQRYKGLGEMNPEQLWETTMDPTVRRLLRVQIDDAI----E 841

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
                  LMG + + R +FI++ A    ++ 
Sbjct: 842 ADRVFTMLMGDEVEPRREFIEQNALRAANID 872


>gi|82798478|gb|ABB91902.1| DNA gyrase subunit B [Acholeplasma vituli]
 gi|82798480|gb|ABB91903.1| DNA gyrase subunit B [Acholeplasma vituli]
          Length = 546

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 215/560 (38%), Positives = 324/560 (57%), Gaps = 17/560 (3%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIG T E+ LHHL  E++DN++DE + GYA+ I + +     + V D+GRGIPV+ H K
Sbjct: 1   MYIGSTGERGLHHLVWEIVDNSIDESMVGYASEISLEIQKGNIIRVTDDGRGIPVDIHAK 60

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
              KS +E ILT LHAGGKFD  +Y++SGGLHGVG SVVNALS    VT+ R   ++ Q+
Sbjct: 61  -TKKSAVETILTVLHAGGKFDGKSYKVSGGLHGVGASVVNALSSWFRVTIRRNGLLYQQE 119

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           + +GIP   L+   +     GT I F+ DP++F +   +D   L    Q  A+L+  +K 
Sbjct: 120 YKKGIPQYDLKVIGEST-HTGTEIEFQADPEVFTETTTYDFETLRNRIQELAFLNRHIKI 178

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
                +        P + E+ + GG++ Y+     N+ ++  EI   + E       TVE
Sbjct: 179 SIEDQR-----GETPVRFEYQYEGGIQEYVTFLNGNKGIVHPEIVYAQKEVDNI---TVE 230

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDD 361
            A+ + +     + S+ N I T EGG HE G ++ALTR I  YA+     K+  S I +D
Sbjct: 231 LALQYNDSYATNVFSFTNNIHTHEGGMHEDGFKLALTRVIGNYAKDNNILKKDESFIGED 290

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
                  I+SV    P+F GQTKTKL + + ++ V     +  + +L++NP  A  +++ 
Sbjct: 291 TREGLTAIISVKHPNPQFEGQTKTKLGNPEVRQIVSQITGEALERFLLENPTAAKSIMDK 350

Query: 422 VIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
           V+  S  R+  RK +E  R+ + +  L    KLADC       +E++IVEGDSAGGSAKQ
Sbjct: 351 VLMASRARIAARKAKEATRRKSPLDMLGFASKLADCRNRKPEESEIYIVEGDSAGGSAKQ 410

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            R+ + QA+LPLRGK+LNV  A  +K  +N++I+ ++QA G      +     RY K++I
Sbjct: 411 GRDSAFQAILPLRGKVLNVEKARLDKALSNKEILSMIQAFGTGIGEDFDITKARYHKIVI 470

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKI 600
           MTDADVDGAHI +L+LTF ++ M  LI+  ++++  PPL+++  G +  Y +DEE  + +
Sbjct: 471 MTDADVDGAHIRTLMLTFLFRYMKPLIDFGYVYVAQPPLYKVQSGKRIEYVYDEERLRVV 530

Query: 601 LEEFKKHGKGKIEISRFKGL 620
           LE+      G+  I R+KGL
Sbjct: 531 LEQMG----GRPAIQRYKGL 546


>gi|313112547|ref|ZP_07798211.1| DNA gyrase, B subunit [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310625129|gb|EFQ08420.1| DNA gyrase, B subunit [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 572

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 218/570 (38%), Positives = 324/570 (56%), Gaps = 21/570 (3%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +   A  +    Y+AS I++L+GLE VR RPGMYIG T E+ LHHL  E++DNA+DE +A
Sbjct: 7   TSTNAETATDHEYNASEIQVLKGLEAVRKRPGMYIGSTGERGLHHLVYEIVDNAIDEALA 66

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF--DNSTYE 149
           GY + IEV +  +  + V DNGRGIPV+          + ++ T LHAGGKF  +NS Y+
Sbjct: 67  GYCDHIEVKILKDNIIQVTDNGRGIPVDIQA-DTGLPAVTVVYTILHAGGKFGGENSGYK 125

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRIT 208
           ++GGLHGVG SVVNA S+ L V V R    + Q F RG P  PL+    V +   GTR+T
Sbjct: 126 VAGGLHGVGASVVNACSEWLTVNVRRDGHEYEQTFRRGDPDGPLKCIGTVADGVTGTRVT 185

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI--------AEKYGIPEK 260
           F+PDP++F D   +D   L K  + +++L+  VK   + ++E+         E       
Sbjct: 186 FKPDPEMFRDTTVYDFDTLEKRLREESFLNAGVKITLTDEREMYTPVLEDGKEGEPCYRT 245

Query: 261 EEFYFPGGLKTYLQTKLENR--SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           E   + GG+K+++    E R   ++   +   K +     RG  E A+ +       + S
Sbjct: 246 EVMCYEGGIKSFVTYLGEKRKLDVLHPNVIYLKGQTD---RGMAEIALQYNSSYNELLLS 302

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N + T +GGTHE G + +LTR    Y         +  ++   D+    + ++SV ++
Sbjct: 303 FANNVNTPDGGTHEEGFKNSLTRVFNDYGRSHGLLKDKDENLSGADVREGLICVISVKLQ 362

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRK 434
           E EF GQTK KL + + +  V N +      +  +NP  A  +  +           ++ 
Sbjct: 363 EAEFEGQTKAKLGNTEIRTLVSNMVYSKLMEFFEENPGVAKAIFEKATQAARARAAAKKA 422

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +  V RK+A+   R+PGKLADC +     TE+FIVEGDSAGGSAK  R+ + QA+LPL G
Sbjct: 423 RELVRRKSALETSRMPGKLADCREKDPSRTEIFIVEGDSAGGSAKMGRDSAIQAILPLWG 482

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           K+LNV  A ++KI  N ++M +V ALGC    ++    LRY+KV IM DADVDG+HI +L
Sbjct: 483 KMLNVEKARADKIYGNDKLMPVVLALGCGIGDEFDISKLRYDKVFIMADADVDGSHICTL 542

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQ 584
           +LTFF++ M  LIEQ H+++  PPLF++ +
Sbjct: 543 MLTFFFRYMRPLIEQGHVYVAQPPLFKVQK 572


>gi|166709899|ref|ZP_02241106.1| DNA gyrase subunit B [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 814

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 229/580 (39%), Positives = 339/580 (58%), Gaps = 18/580 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGY 93
               + +  YD+S I +L GLE VR RPGMYIG   D   LHH+  EV+DN++DE +AG+
Sbjct: 6   NTPPTPNGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDEALAGH 65

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ I V +  +G + V DNGRG+PV+ H K    S  E+ILT LHAGGKFD+++Y++SGG
Sbjct: 66  ADDIVVKILVDGSVAVSDNGRGVPVDIH-KEEGVSAAEVILTVLHAGGKFDDNSYKVSGG 124

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS+ L + + R    + Q+++ G P  PL++ E     RGT + F+P  
Sbjct: 125 LHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQLEASTK-RGTTLRFKPSV 183

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF D   F    L +  +  ++L+  VK     ++          +++F++ GG+++++
Sbjct: 184 AIFSDV-EFHYDILARRLRELSFLNSGVKITLIDERG------EGRRDDFHYEGGIRSFV 236

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   + +S +   + +   E  G     V+ A+ W +     +  + N I   +GGTH +
Sbjct: 237 EHLAQLKSPLHPNVISVTGEHNGI---VVDVALQWTDAYQETMYCFTNNIPQKDGGTHLA 293

Query: 333 GLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR +  Y E     +   +    DD+    + +LSV + +P F+ QTK KLVS 
Sbjct: 294 GFRAALTRVLSTYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSS 353

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRL 449
           D +  VENA       +L +NP EA  +   +++ +  R   RK      RK A+    L
Sbjct: 354 DVRPAVENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGL 413

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +ELFIVEGDSAGGSAKQ RNR NQAVLPLRGKILNV  A  +++  
Sbjct: 414 PGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLA 473

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           + Q+  L+ ALG    R +Y  + LRY ++I+MTDADVDG+HI +LLLTFFY++M +LIE
Sbjct: 474 SDQVGTLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIE 533

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           + ++++  PPL+++ QG   +Y  D+      L      G
Sbjct: 534 RGYIYIGLPPLYKLKQGKSELYLKDDAALNAYLASNAVEG 573



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G KS            L +  K G+   ++ RFKGLGEM A QL ET ++ + R LL
Sbjct: 717 IVRGNKSHPITSFAQAHAWLLDEAKKGR---QVQRFKGLGEMNAEQLWETTVNPDTRRLL 773

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +          + LMG   + R  FI++ A  + ++ 
Sbjct: 774 QVRIEDAV----AADQIFSTLMGDVVEPRRDFIEDNALKVSNLD 813


>gi|325915698|ref|ZP_08178003.1| DNA gyrase subunit B [Xanthomonas vesicatoria ATCC 35937]
 gi|325538115|gb|EGD09806.1| DNA gyrase subunit B [Xanthomonas vesicatoria ATCC 35937]
          Length = 814

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 229/580 (39%), Positives = 339/580 (58%), Gaps = 18/580 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGY 93
               + +  YD+S I +L GLE VR RPGMYIG   D   LHH+  EV+DN++DE +AG+
Sbjct: 6   NTPTTPNGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDEALAGH 65

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ I V +  +G + V DNGRG+PV+ H K    S  E+ILT LHAGGKFD+++Y++SGG
Sbjct: 66  ADDIVVKILVDGSVAVSDNGRGVPVDIH-KEEGVSAAEVILTVLHAGGKFDDNSYKVSGG 124

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS+ L + + R    + Q+++ G P  PL++ E     RGT + F+P  
Sbjct: 125 LHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQLEASTK-RGTTLRFKPAV 183

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF D   F    L +  +  ++L+  VK     ++          +++F++ GG+++++
Sbjct: 184 AIFSDV-EFHYDILARRLRELSFLNSGVKIALIDERG------EGRRDDFHYEGGIRSFV 236

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   + +S +   + +   E  G     V+ A+ W +     +  + N I   +GGTH +
Sbjct: 237 EHLAQLKSPLHPNVISVTGEHNGI---VVDVALQWTDAYQETMYCFTNNIPQKDGGTHLA 293

Query: 333 GLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR +  Y E     +   +    DD+    + +LSV + +P F+ QTK KLVS 
Sbjct: 294 GFRAALTRVLSSYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSS 353

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRL 449
           D +  VENA       +L +NP EA  +   +++ +  R   RK      RK A+    L
Sbjct: 354 DVRPAVENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGL 413

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +ELFIVEGDSAGGSAKQ RNR NQAVLPLRGKILNV  A  +++  
Sbjct: 414 PGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLA 473

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           + Q+  L+ ALG    R +Y  + LRY ++I+MTDADVDG+HI +LLLTFFY++M +LIE
Sbjct: 474 SDQVGTLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIE 533

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           + ++++  PPL+++ QG   +Y  D+      L      G
Sbjct: 534 RGYIYIGLPPLYKLKQGKSELYLKDDAALNAYLASNAVEG 573



 Score =  137 bits (344), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G K+            L E  K G+   ++ RFKGLGEM A QL ET ++ + R LL
Sbjct: 717 IVRGNKTHAITSFAQAHAWLLEEAKRGR---QVQRFKGLGEMNAEQLWETTVNPDTRRLL 773

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +          + LMG   + R  FI++ A  + ++ 
Sbjct: 774 QVRIEDAV----AADQIFSTLMGDVVEPRRDFIEDNALKVSNLD 813


>gi|2827016|gb|AAC38108.1| DNA gyrase subunit B [Buchnera aphidicola]
          Length = 803

 Score =  482 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 221/565 (39%), Positives = 339/565 (60%), Gaps = 18/565 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           D YD+S I+IL GL+ VR RPGMYIG TD+   LHH+  E++DN++DE +AG+   I+V 
Sbjct: 3   DTYDSSKIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVFEIVDNSIDEALAGFCKEIKVV 62

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  +++ D+GRGIP + HP+    S  E+I+T LH+GGKFDN++Y+ISGGLHGVGIS
Sbjct: 63  IHSDNSVSIKDDGRGIPTDIHPE-EKISAAEVIMTVLHSGGKFDNASYKISGGLHGVGIS 121

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS++L + + +    + Q++  G P SPL          GT I F P  KIF +K 
Sbjct: 122 VVNALSEKLELIIYKNKKKYRQQYENGNPESPLCIIGAT-EITGTYIRFWPSYKIFTNKT 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L K  +  ++L+  +      ++   E       E++++ GG+K +++   +N+
Sbjct: 181 QFQYEILSKRLRELSFLNSNILIHLKDNRTNLE-------EKYHYKGGIKAFIKFLNKNK 233

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALT 339
             I+  IF  +  K    +  +E AI W       I  + N I   +GGTH SG R  +T
Sbjct: 234 FPINLNIFYFRCIKN---QIELEIAIQWNNSHQENILCFTNNIPQKDGGTHLSGFRAGIT 290

Query: 340 RGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  + E      K    I  +D       I+S+ I +P+F+ QTK KLVS + +  +E
Sbjct: 291 RTLNLHIEREGYNKKNKTIITGEDTREGLTAIISIKIPDPKFSSQTKDKLVSSEVKSVIE 350

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
           + + +    YL++NPI+A  +++ +I  ++ R   R+ RE   +K  +    LPGKL+DC
Sbjct: 351 SLINENLIEYLLENPIDAKFIIQKIINSAKIREAARRAREINKKKGTLDLGTLPGKLSDC 410

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            +N    +E+++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV     +KI  +Q++  L
Sbjct: 411 QENDPKLSEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVQKTKFDKIILSQELTSL 470

Query: 517 VQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           + ALGC         + LRY  +IIMTDADVDGAHI +LLLTFFY+++ +LI++ ++++ 
Sbjct: 471 ITALGCSITKSEYSLDKLRYNHIIIMTDADVDGAHIRTLLLTFFYRQLPELIKKGYVYIA 530

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKI 600
            PPL+++ +G +  Y  ++E   K 
Sbjct: 531 QPPLYKVKKGKQEKYIKNDEEMNKY 555



 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G K    +     +  LE   K  K    + R+KGLGEM   QL  T M+   R +L
Sbjct: 706 IEKGEK---IYKINDIKNTLEWLIKETKRGFFVQRYKGLGEMNPDQLWNTTMNPETRNML 762

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +       +  N LMG   + R KFIQ+ A   +++ 
Sbjct: 763 QVTIKDAI----SANNLFNTLMGDLVEPRRKFIQKNALKAENID 802


>gi|315122037|ref|YP_004062526.1| DNA gyrase subunit B [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495439|gb|ADR52038.1| DNA gyrase subunit B [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 802

 Score =  482 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 235/573 (41%), Positives = 336/573 (58%), Gaps = 16/573 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
             N   + +Y A SI+IL+GL+ V+ RP MYIG TD+   LHH+  EV+DNA+DE + GY
Sbjct: 1   MNNNIQNSSYSADSIQILKGLDAVKKRPSMYIGDTDDGSGLHHMVYEVLDNAIDEALEGY 60

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A++I V+L+ +G  TV DNGRGIP + H K    S  E+I+T LHAGGKFD ++Y++SGG
Sbjct: 61  ADIINVTLNMDGSCTVSDNGRGIPTDIH-KEEGISATEVIMTRLHAGGKFDQNSYKVSGG 119

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS  L + + R+  I+   F  GI  SPL          GT ITF P+ 
Sbjct: 120 LHGVGVSVVNALSSWLKLRIKREGKIYEMSFINGIVDSPLVVVGDAGKDTGTEITFLPNS 179

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF     FD   L    +  ++L+  V       +        P + + ++ GG++ ++
Sbjct: 180 DIFS-IHDFDCDVLKHRLRELSFLNSGVHISLVDKRCSD-----PREIKLFYEGGIEAFV 233

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHES 332
                ++  +       +  +      +V+ A+ W +   E    + N I   +GGTH +
Sbjct: 234 CYLDRHKKPLIQNPIRIQGMRDEI---SVDLAMRWNDGYHENVLCFTNNIPQKDGGTHLA 290

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           GLR ALTR I  Y E +    K   S++ DD       +LS+ I +P F+ QTK KLVS 
Sbjct: 291 GLRSALTRQITSYVEKSFGSKKDKRSVVGDDCREGFTSVLSIKISDPRFSSQTKEKLVSS 350

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRL 449
           + +  VE  + D    +L ++P EA  +++ V+E S  R   R+ R++ R+   +    L
Sbjct: 351 EVRSVVEGLVTDGLSSWLEEHPSEAKIIVKKVLEASMVRDAARRARDLTRRKGVLDIASL 410

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADCS+     +ELF+VEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  +K+ +
Sbjct: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q+I  L+ ALG    +  +  + LRY K+IIMTDADVDGAHI +LLLTFF+++M  LI+
Sbjct: 471 SQEIGTLITALGTGIGQDSFDIKKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIQ 530

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
              L++I PPL+ IT+G    Y  DEE  +  L
Sbjct: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563



 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 4/79 (5%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L+     G+  + + R+KGLGEM ASQL +T ++   R+LLRV+I           D 
Sbjct: 720 SLLDTIFSIGRKGVSMQRYKGLGEMNASQLWDTTLNPEARSLLRVKITD----ASQADDV 775

Query: 659 INKLMGTKADERFKFIQER 677
            ++LMG + + R +FIQE 
Sbjct: 776 FSRLMGDEVEPRREFIQEN 794


>gi|296445647|ref|ZP_06887602.1| DNA gyrase, B subunit [Methylosinus trichosporium OB3b]
 gi|296256892|gb|EFH03964.1| DNA gyrase, B subunit [Methylosinus trichosporium OB3b]
          Length = 809

 Score =  482 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 234/570 (41%), Positives = 336/570 (58%), Gaps = 20/570 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            Y A SI++L GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+A+L+ V+L
Sbjct: 13  EYGADSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVYEVVDNAIDEALAGHASLVTVTL 72

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           D +G  TV DNGRG+P   H K    S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SV
Sbjct: 73  DADGSCTVTDNGRGVPTGIH-KEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSV 131

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-----RNKRGTRITFRPDPKIF 216
           VNALS  L + + +       +F+ G  ++PL           + KRGT++TF P  K F
Sbjct: 132 VNALSVWLKLRIWQDGREHFMEFANGDAVAPLAVVGDAPIEDGKPKRGTQVTFLPSLKTF 191

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                FD A +    +  A+L+  V+   +  +     +   ++EE Y+ GGL+ +++  
Sbjct: 192 KTVVEFDYATIEHRLRELAFLNSGVRIVLTDAR-----HAEQKREELYYEGGLEAFVRYL 246

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335
              ++ + ++      +++      VE A+ W +   E    + N I   +GGTH +G R
Sbjct: 247 DRAKTPLIAQPIMIHGQREHI---NVEVALWWNDSYHENVLVFTNNIPQRDGGTHLAGFR 303

Query: 336 VALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
             LTR I  YAE +   +   +    DD       ++SV + +P+F+ QTK KLVS + +
Sbjct: 304 AGLTRQITGYAERSGLAKREKVDLTGDDCREGLTCVVSVKVPDPKFSSQTKDKLVSSEVR 363

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
             VEN + +  D +L ++P EA  ++  V E +  R   RK RE   RK A+    LPGK
Sbjct: 364 PAVENIVNELLDQWLEEHPQEAKAVVSKVCEAAVAREAARKARELTRRKGALDVANLPGK 423

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +      ELFIVEGDSAGG+AKQ RNR  QAVLPLRGKILNV  A  +K+ +++Q
Sbjct: 424 LADCQERDPAKAELFIVEGDSAGGTAKQGRNREFQAVLPLRGKILNVERARFDKMLSSEQ 483

Query: 513 IMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           I  L+ ALG          + LRY K+IIMTDADVDGAHI +L+LTFFY++M  LIE+ H
Sbjct: 484 IGTLITALGTGIGRDEFNADKLRYHKIIIMTDADVDGAHIRTLILTFFYRQMPQLIERGH 543

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +F+   PL+++T+   + Y  DE   +  L
Sbjct: 544 VFIAQAPLYKVTKAKSTQYLKDERALEDYL 573



 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            + +     G+  + I R+KGLGEM A QL ET +D   R+LL+V + + +    + +D 
Sbjct: 726 ALYDATAALGRKGLAIQRYKGLGEMNAEQLWETTLDREVRSLLQVRVKEAV----EAEDI 781

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R +FIQE A  + ++ 
Sbjct: 782 FVKLMGDVVEPRREFIQENALNVANLD 808


>gi|21672304|ref|NP_660371.1| DNA gyrase subunit B [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|22654250|sp|P29435|GYRB_BUCAP RecName: Full=DNA gyrase subunit B
 gi|21622902|gb|AAM67582.1| DNA gyrase subunit B [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 803

 Score =  482 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 221/565 (39%), Positives = 339/565 (60%), Gaps = 18/565 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           D YD+S I+IL GL+ VR RPGMYIG TD+   LHH+  E++DN++DE +AG+   I+V 
Sbjct: 3   DTYDSSKIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVFEIVDNSIDEALAGFCKEIKVV 62

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  +++ D+GRGIP + HP+    S  E+I+T LH+GGKFDN++Y+ISGGLHGVGIS
Sbjct: 63  IHSDNSVSIKDDGRGIPTDIHPE-EKISAAEVIMTVLHSGGKFDNASYKISGGLHGVGIS 121

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS++L + + +    + Q++  G P SPL          GT I F P  KIF +K 
Sbjct: 122 VVNALSEKLELIIYKNKKKYRQQYKNGNPESPLCIIGAT-EITGTYIRFWPSYKIFTNKT 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L K  +  ++L+  +      ++   E       E++++ GG+K +++   +N+
Sbjct: 181 QFQYEILSKRLRELSFLNSNILIHLKDNRTNLE-------EKYHYKGGIKAFIKFLNKNK 233

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALT 339
             I+  IF  +  K    +  +E AI W       I  + N I   +GGTH SG R  +T
Sbjct: 234 FPINLNIFYFRCIKN---QIELEIAIQWNNSHQENILCFTNNIPQKDGGTHLSGFRAGIT 290

Query: 340 RGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  + E      K    I  +D       I+S+ I +P+F+ QTK KLVS + +  +E
Sbjct: 291 RTLNLHIEREGYNKKNKTIITGEDTREGLTAIISIKIPDPKFSSQTKDKLVSSEVKSVIE 350

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
           + + +    YL++NPI+A  +++ +I  ++ R   R+ RE   +K  +    LPGKL+DC
Sbjct: 351 SLINENLIEYLLENPIDAKFIIQKIINSAKIREAARRAREINKKKGTLDLGTLPGKLSDC 410

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            +N    +E+++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV     +KI  +Q++  L
Sbjct: 411 QENDPKLSEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVQKTKFDKIILSQELTSL 470

Query: 517 VQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           + ALGC         + LRY  +IIMTDADVDGAHI +LLLTFFY+++ +LI++ ++++ 
Sbjct: 471 ITALGCSITKSEYSLDKLRYNHIIIMTDADVDGAHIRTLLLTFFYRQLPELIKKGYVYIA 530

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKI 600
            PPL+++ +G +  Y  ++E   K 
Sbjct: 531 QPPLYKVKKGKQEKYIKNDEEMNKY 555



 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G K    +     +  LE   K  K    + R+KGLGEM   QL  T M+   R +L
Sbjct: 706 IEKGEK---IYKINDIKNTLEWLIKETKRGFFVQRYKGLGEMNPDQLWNTTMNPETRNML 762

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +       +  N LMG   + R KFIQ+ A   +++ 
Sbjct: 763 QVTIKDAI----SANNLFNTLMGDLVEPRRKFIQKNALKAENID 802


>gi|237751289|ref|ZP_04581769.1| DNA gyrase subunit B [Helicobacter bilis ATCC 43879]
 gi|229372655|gb|EEO23046.1| DNA gyrase subunit B [Helicobacter bilis ATCC 43879]
          Length = 775

 Score =  482 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 222/588 (37%), Positives = 348/588 (59%), Gaps = 23/588 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           ++ +  Y A +I++L+GLE VR RPGMYIG T+   LHH+  EV+DN++DE +AG+   I
Sbjct: 2   ENTTKEYLADNIKVLKGLEAVRKRPGMYIGDTNTNGLHHMIYEVVDNSIDEAMAGFCKNI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +++L   G   + D+GRGIPV+ HP   N     ++LT LHAGGKFD  TY++SGGLHGV
Sbjct: 62  KITLTDKGSAIIEDDGRGIPVDMHP-TENMPAATVVLTVLHAGGKFDKDTYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS +L +T+ + N I+ Q+F +GIP + LE   + +   GT I F PDP+I  
Sbjct: 121 GVSVVNALSCKLIMTIYKNNKIYKQEFEKGIPTTELEIIGETKKH-GTTIEFFPDPEIME 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               FD+  L +  +  AYL+  +K  +  +++ ++         F+F GGL  +++   
Sbjct: 180 -ITEFDSNILTRRFKEMAYLTHGIKIRFKDERDGSDTT-------FHFEGGLSQFIEDI- 230

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N+  + ++I + +   +  +   +E A+A+ E    ++ S+ N I T +GGTHE+G R 
Sbjct: 231 -NKKTLITQILSFEAT-ENEYDSEIEIALAYNEGYDEKVLSFVNNIRTPDGGTHEAGFRA 288

Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
            L+R I  Y E   N  ++ + ++ DD+    V I++  I +P+F GQTK KL S   + 
Sbjct: 289 GLSRAILNYIEANANTREKDVKVLGDDVREGLVAIVATKIMDPQFEGQTKGKLGSSFVKG 348

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            V+    +    +  +NP +A  +++ V+  +  R   ++ R+   +   +    LPGK 
Sbjct: 349 IVQKLTYEKISKFFEENPTQAKLIMQKVLIAARGREAAKRARDLTRKDNKVSVSTLPGKF 408

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC        E+++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  +  + I  +++I
Sbjct: 409 ADCQSKDPSECEIYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRLDTILKSEEI 468

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            +++ A GC    ++ EE LRY K+IIMTDADVDG+HI +LL+TFFY+    L++  +++
Sbjct: 469 KNMITAFGCGIGDEFNEEKLRYHKIIIMTDADVDGSHIQTLLMTFFYRYFKPLVQGGYIY 528

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
           +  PPL++  +  K VY  D++     L E        IE   FKG+G
Sbjct: 529 IAQPPLYKYKRNKKEVYLKDDKALSDFLIE------NGIEHFNFKGIG 570



 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 4/85 (4%)

Query: 601 LEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660
           LEE ++  + K +ISR+KGLGEM   +L ET M    RTL++V+I  D    +   +  N
Sbjct: 694 LEEIEEATRKKGDISRYKGLGEMNKEELWETTMSPQNRTLVQVKIEDD----EMADEMFN 749

Query: 661 KLMGTKADERFKFIQERASFIDDVG 685
             MG + + R ++IQ+ A  + ++ 
Sbjct: 750 IFMGDEVEPRRQYIQKHARDVKNLD 774


>gi|311087503|gb|ADP67582.1| DNA gyrase subunit B [Buchnera aphidicola str. JF98 (Acyrthosiphon
           pisum)]
          Length = 803

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 215/565 (38%), Positives = 345/565 (61%), Gaps = 18/565 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + YD+S+I+IL GL+ VR RPGMYIG TD+   LHH+  E++DN++DE ++GY   I V+
Sbjct: 3   NIYDSSNIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVFEIVDNSIDEALSGYCKEIIVT 62

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  ++V D+GRGIP + HP+  N S  E+I+T LH+GGKFDN++Y+ISGGLHGVGIS
Sbjct: 63  IHSDNSVSVKDDGRGIPTDIHPE-ENISAAEVIMTVLHSGGKFDNASYQISGGLHGVGIS 121

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS++L + + +    + Q +  G P +PL       +  GT I F P  K F +  
Sbjct: 122 VVNALSEKLELIIDKNKKKYQQIYRHGKPENPLSIIG-TTDATGTYIRFWPSYKTFTNNI 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L K  +  ++L+  +      ++   +         +++ GG+K +++     +
Sbjct: 181 KFQYEILSKRLRELSFLNSNIAIYLEDNRTSIKN-------CYHYKGGIKAFIKFLNAKK 233

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALT 339
           + I + IF  ++ K    +  +E A+ W       I  + N I   +GGTH +G R  +T
Sbjct: 234 TPIHTHIFYFRSTKD---QIELEIAMQWNNSHQENILCFTNNIPQKDGGTHLAGFRSGMT 290

Query: 340 RGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  + E      K   +II +D+      I+S+ I +P+F+ QTK KLVS +A+  +E
Sbjct: 291 RTLNLHIEREGYNKKNKTTIIGEDVREGLTAIISIKIPDPKFSSQTKDKLVSSEARSVIE 350

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
           + + +    YL++NP ++  +++ +I  ++ R   R+ RE   +K+ +    LPGKL+DC
Sbjct: 351 SLINENLIEYLLENPSDSKFIIQKIINAAKVREAARRAREINKKKSILDLGALPGKLSDC 410

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            +N    +E+++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  +  +K+  +Q++  L
Sbjct: 411 QENDPKFSEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKSKFDKMILSQEVASL 470

Query: 517 VQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           + ALGC   +++Y  + LRY  +IIMTDADVDGAHI +LLLTFFY+++ +LIE+ ++++ 
Sbjct: 471 ITALGCGIGKNEYNIDKLRYHYIIIMTDADVDGAHIRTLLLTFFYRQLPELIEKGYVYIA 530

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKI 600
            PPL+++ +G K  Y  ++E     
Sbjct: 531 QPPLYKLKKGRKEKYIKNDEEMNTY 555



 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 4/99 (4%)

Query: 587 KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646
           KS   +  +  +   +   K  K  + I R+KGLGEM   QL  T M+   R +L+V I 
Sbjct: 708 KSGSTYKIDSIKNTWKWLIKQSKRGLFIQRYKGLGEMNPEQLWNTTMNPETRNMLQVTIK 767

Query: 647 KDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             +       +  N LMG   + R +FI+  A   +++ 
Sbjct: 768 DAV----SANNLFNTLMGEAVEPRRQFIENNALKAENID 802


>gi|33598882|ref|NP_886525.1| DNA gyrase subunit B [Bordetella parapertussis 12822]
 gi|33575012|emb|CAE39678.1| DNA gyrase subunit B [Bordetella parapertussis]
          Length = 817

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 223/577 (38%), Positives = 340/577 (58%), Gaps = 17/577 (2%)

Query: 36  ANQSASDN-YDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGY 93
            N +  +  Y A SI++L+GLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+
Sbjct: 5   QNTTPENTGYGADSIKMLKGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEALAGH 64

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFP-NKSTLEIILTTLHAGGKFDNSTYEISG 152
            + I V++  +  ++V DNGRGIP + H      +S  EI++T LHAGGKFD ++Y++SG
Sbjct: 65  CDDIVVTIHTDNSISVTDNGRGIPTDIHKDDEFGRSAAEIVMTELHAGGKFDQNSYKVSG 124

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+S VNALS+ L +T+ R   +   +F +G  ++PL       +KRGT + F  D
Sbjct: 125 GLHGVGVSCVNALSEWLRLTIRRNGQVHQMEFRQGQRVAPLTATGPT-DKRGTEVRFLAD 183

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P IF +   +    L K  +  ++L+  VK      ++  E       E F F GG+K +
Sbjct: 184 PAIFTNI-EYHYEILSKRLRELSFLNNGVKVRLVDQRQGKE-------ENFAFSGGVKGF 235

Query: 273 LQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++    ++S++   +F    E   G     VE A+ W +     +  + N I   +GGTH
Sbjct: 236 VEYINRSKSVLHPNVFAVSAESSAGGVLVGVEVAMQWNDSYSESVLCFTNNIPQRDGGTH 295

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +GLR A+TR + KY    +   K  +    DD+      +LSV + EP+F+ QTK KLV
Sbjct: 296 LTGLRAAMTRVLNKYIADNELAKKAKVETTGDDMREGLACVLSVKVPEPKFSSQTKDKLV 355

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKL 447
           S + +  VE+A+    + +L+++P +A  L   ++E +  R   RK RE+ R+ + +   
Sbjct: 356 SSEVRPAVEDAVARTLETWLLEHPNDAKALCGKIVEAARAREAARKAREMTRRKSVLEGA 415

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +      EL+IVEGDSAGGSAKQ R+R  QA+LPLRGK+LNV  A  +++
Sbjct: 416 GLPGKLADCQEKDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARFDRL 475

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             ++QI  L+ ALG      +  + LRY ++IIMTDADVDGAHI +LLLT  Y++M +L+
Sbjct: 476 IASEQIATLITALGTSIGPDFNIDKLRYHRLIIMTDADVDGAHIRTLLLTLLYRQMPELV 535

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
            + H+++  PPL+++  G    Y  D++ + + + + 
Sbjct: 536 ARGHVYIAQPPLYKVKVGRDERYLKDDQEEAQFMLQL 572



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 7/102 (6%)

Query: 585 GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644
             K  +  D    ++ ++  +   +  +   R+KGLGEM   QL ET MD   R LLRV+
Sbjct: 723 KRKEQFVSD---FREAMQWLRGEAERGLSKQRYKGLGEMNPEQLWETTMDPKVRRLLRVQ 779

Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           I   +       +    LMG   + R  FI+  A    ++  
Sbjct: 780 IEDAI----AADEVFTTLMGDDVEPRRAFIETHALSAGNIDA 817


>gi|33603961|ref|NP_891521.1| DNA gyrase subunit B [Bordetella bronchiseptica RB50]
 gi|33568937|emb|CAE35351.1| DNA gyrase subunit B [Bordetella bronchiseptica RB50]
          Length = 817

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 223/577 (38%), Positives = 340/577 (58%), Gaps = 17/577 (2%)

Query: 36  ANQSASDN-YDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGY 93
            N +  +  Y A SI++L+GLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+
Sbjct: 5   QNTTPENTGYGADSIKMLKGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEALAGH 64

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFP-NKSTLEIILTTLHAGGKFDNSTYEISG 152
            + I V++  +  ++V DNGRGIP + H      +S  EI++T LHAGGKFD ++Y++SG
Sbjct: 65  CDDIVVTIHTDNSISVTDNGRGIPTDIHKDDEFGRSAAEIVMTELHAGGKFDQNSYKVSG 124

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+S VNALS+ L +T+ R   +   +F +G  ++PL       +KRGT + F  D
Sbjct: 125 GLHGVGVSCVNALSEWLRLTIRRNGQVHQMEFRQGQRVAPLTATGPT-DKRGTEVRFLAD 183

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P IF +   +    L K  +  ++L+  VK      ++  E       E F F GG+K +
Sbjct: 184 PAIFTNI-EYHYEILSKRLRELSFLNNGVKVRLVDQRQGKE-------ENFAFSGGVKGF 235

Query: 273 LQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++    ++S++   +F    E   G     VE A+ W +     +  + N I   +GGTH
Sbjct: 236 VEYINRSKSVLHPNVFAVSAESSAGGVLVGVEVAMQWNDSYSESVLCFTNNIPQRDGGTH 295

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +GLR A+TR + KY    +   K  +    DD+      +LSV + EP+F+ QTK KLV
Sbjct: 296 LTGLRAAMTRVLNKYIADNELAKKAKVETTGDDMREGLACVLSVKVPEPKFSSQTKDKLV 355

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKL 447
           S + +  VE+A+    + +L+++P +A  L   ++E +  R   RK RE+ R+ + +   
Sbjct: 356 SSEVRPAVEDAVARTLETWLLEHPNDAKALCGKIVEAARAREAARKAREMTRRKSVLEGA 415

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +      EL+IVEGDSAGGSAKQ R+R  QA+LPLRGK+LNV  A  +++
Sbjct: 416 GLPGKLADCQEKDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARFDRL 475

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             ++QI  L+ ALG      +  + LRY ++IIMTDADVDGAHI +LLLT  Y++M +L+
Sbjct: 476 IASEQIATLITALGTSIGPDFNIDKLRYHRLIIMTDADVDGAHIRTLLLTLLYRQMPELV 535

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
            + H+++  PPL+++  G    Y  D++ + + + + 
Sbjct: 536 ARGHVYIAQPPLYKVKVGRDERYLKDDQEEAQFMLQL 572



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 7/102 (6%)

Query: 585 GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644
             K  +  D    ++ ++  +   +  +   R+KGLGEM   QL ET MD   R LLRV+
Sbjct: 723 KRKEQFVSD---FREAMQWLRGEAERGLSKQRYKGLGEMNPEQLWETTMDPKVRRLLRVQ 779

Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           I   +       +    LMG   + R  FI+  A    ++  
Sbjct: 780 IEDAI----AADEVFTTLMGDDVEPRRAFIETHALSAGNIDA 817


>gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040491|gb|ACT57287.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62]
          Length = 803

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 245/670 (36%), Positives = 366/670 (54%), Gaps = 49/670 (7%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-EKALHHLFSEVIDNAMDEVIAGY 93
            ++   + +YDA SI+IL+GL+ V+ RP MYIG TD E  LHH+  EV+DNA+DE + GY
Sbjct: 1   MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A++I V+L+ +G  TV DNGRGIP + H K    S  E+I+T LHAGGKF+  +Y++SGG
Sbjct: 61  ADIITVTLNMDGSCTVSDNGRGIPTDLH-KEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS  L + + R+  I+   F  GI  +PL       N  GT +TF P  
Sbjct: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF  +  F+   L    +  ++L+  V+      +        P +   ++ GG++ ++
Sbjct: 180 DIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP-----EPREITMFYKGGIEAFV 233

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHES 332
                ++  +       +  +      +++ A+ W +   E    + N I   +GGTH S
Sbjct: 234 SYLDRHKKPLMQSPIRIQGSRDNI---SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           GLR ALTR I  Y E +    K   S+I DD       +LS+ + +P F+ QTK KLVS 
Sbjct: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRL 449
           + +  VE+ + D    +L ++P+EA  +++ V++ S  R   R+ R++ R+   +    L
Sbjct: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADCS+     +ELF+VEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  +K+ +
Sbjct: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q+I  L+ ALG    +  +    LRY K+IIMTDADVDGAHI +LLLTFF+++M  LI 
Sbjct: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL---------------------EEFKKH 607
              L++I PPL+ IT+G    Y  DEE  +  L                      + +  
Sbjct: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590

Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667
               ++I             +K+   + +K  + +  I+   N   D +  IN  + +K 
Sbjct: 591 IDDALKI----------DKLIKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKL 638

Query: 668 DERFKFIQER 677
             R  FI E+
Sbjct: 639 ANRLNFIAEK 648



 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 4/79 (5%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L+     G+  I + R+KGLGEM ASQL ET ++ + R+LLRV+I           D 
Sbjct: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD----ASQADDL 776

Query: 659 INKLMGTKADERFKFIQER 677
            ++LMG + + R +FIQE 
Sbjct: 777 FSRLMGDEVEPRREFIQEN 795


>gi|289667646|ref|ZP_06488721.1| DNA gyrase subunit B [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 814

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 229/580 (39%), Positives = 337/580 (58%), Gaps = 18/580 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGY 93
               + S  YD+S I +L GLE VR RPGMYIG   D   LHH+  EV+DN++DE +AG+
Sbjct: 6   NTPPTPSGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDEALAGH 65

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ I V +  +G + V DNGRG+PV+ H K    S  E+ILT LHAGGKFD+++Y++SGG
Sbjct: 66  ADDIVVKILVDGSVAVSDNGRGVPVDIH-KEEGVSAAEVILTVLHAGGKFDDNSYKVSGG 124

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS+ L + + R    + Q+++ G P  PL++ E     RGT + F+P  
Sbjct: 125 LHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQLEASTK-RGTTLRFKPSV 183

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF D   F    L +  +  ++L+  VK     ++          +++F++ GG+++++
Sbjct: 184 AIFSDV-EFHYDILARRLRELSFLNSGVKITLIDERG------EGRRDDFHYEGGIRSFV 236

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   + +S +   + +   E  G     V+ A+ W +     +  + N I   +GGTH +
Sbjct: 237 EHLAQLKSPLHPNVISVTGEHNGI---VVDVALQWTDAYQETMYCFTNNIPQKDGGTHLA 293

Query: 333 GLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR +  Y E     +   +    DD+    + +LSV + +P F+ QTK KLVS 
Sbjct: 294 GFRAALTRVLSTYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSS 353

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRL 449
           D +  VENA       +L +NP E   +   +++ +  R   RK      RK A+    L
Sbjct: 354 DVRPAVENAFGARLQEFLQENPNEVKAITGKIVDAARAREAARKARDLTRRKGALDIAGL 413

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +ELFIVEGDSAGGSAKQ RNR NQAVLPLRGKILNV  A  +++  
Sbjct: 414 PGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLA 473

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           + Q+  L+ ALG    R +Y  + LRY ++I+MTDADVDG+HI +LLLTFFY++M +LIE
Sbjct: 474 SDQVGTLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIE 533

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           + ++++  PPL+++ QG   +Y  D       L      G
Sbjct: 534 RGYIYIGLPPLYKLKQGKSELYLKDAAALNAYLASNAVEG 573



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G KS    +       L +  K G+   ++ RFKGLGEM A QL ET ++ + R LL
Sbjct: 717 IVRGNKSHPITNFAQAHAWLLDEAKKGR---QVQRFKGLGEMNAEQLWETTVNPDTRRLL 773

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +          + LMG   + R  FI++ A  + ++ 
Sbjct: 774 QVRIEDAV----AADQIFSTLMGDVVEPRRDFIEDNALKVSNLD 813


>gi|187479879|ref|YP_787904.1| DNA gyrase subunit B [Bordetella avium 197N]
 gi|115424466|emb|CAJ51020.1| DNA gyrase subunit B [Bordetella avium 197N]
          Length = 817

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 225/571 (39%), Positives = 336/571 (58%), Gaps = 16/571 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           +  Y A SI++L+GLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AGY + I V
Sbjct: 11  TSGYGADSIKMLKGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEALAGYCDDIVV 70

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFP-NKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           ++  +  ++V DNGRGIP + H      +S  EI++T LHAGGKFD ++Y++SGGLHGVG
Sbjct: 71  TIHTDNSISVTDNGRGIPTDIHKDDEFGRSAAEIVMTELHAGGKFDQNSYKVSGGLHGVG 130

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +S VNALS+ L +T+ R   +   +F +G  ++PL       +KRGT + F  DP I   
Sbjct: 131 VSCVNALSEWLRLTIRRNGQVHQMEFRQGERVAPLAVTG-TTDKRGTEVRFLADP-IIFT 188

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              +    L K  +  ++L+  VK      ++  E       E F F GG+K +++    
Sbjct: 189 NIEYHYEILSKRLRELSFLNNGVKIRLIDQRQGKE-------ENFAFSGGVKGFVEYINR 241

Query: 279 NRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            ++++   +F   TE   G     VE A+ W +     +  + N I   +GG+H +GLR 
Sbjct: 242 AKTVLHPNVFAVSTESSAGGVPVGVEVAMQWNDSYSESVLCFTNNIPQRDGGSHLTGLRA 301

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           A+TR I KY    +   K  +    DD+      +LSV + EP+F+ QTK KLVS + + 
Sbjct: 302 AMTRVINKYIADNELAKKAKVETSGDDMREGLACVLSVKVPEPKFSSQTKDKLVSSEVRP 361

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKL 453
            VE+A+    + +L+++P +A  L   ++E +  R   RK RE+ R+ + +    LPGKL
Sbjct: 362 AVEDAVARSLETWLLEHPNDAKALCGKIVEAARAREAARKAREMTRRKSVLEGAGLPGKL 421

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +      EL+IVEGDSAGGSAKQ R+R  QA+LPLRGK+LNV  A  +++  ++QI
Sbjct: 422 ADCQEKDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARFDRLIASEQI 481

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             L+ ALG      +  + LRY ++IIMTDADVDGAHI +LLLT  Y++M +L+ + H++
Sbjct: 482 ATLITALGTSIGPDFNIDKLRYHRLIIMTDADVDGAHIRTLLLTLLYRQMPELVARGHIY 541

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           +  PPLF++  G +  Y  DE  + K + + 
Sbjct: 542 IAQPPLFKVKVGREERYLKDEVEEAKFMLQL 572



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 4/91 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             ++ ++  +   +  +   R+KGLGEM   QL ET MD   R LLRV+I   +      
Sbjct: 731 DFREAMQWLRTEAERGLSKQRYKGLGEMNPDQLWETTMDPAVRRLLRVQIEDAI----AA 786

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVGT 686
            +    LMG   + R  FI+  A    ++  
Sbjct: 787 DEVFTTLMGDDVEPRRAFIETHALSASNIDA 817


>gi|42521654|ref|NP_967034.1| DNA gyrase subunit B [Bdellovibrio bacteriovorus HD100]
 gi|39574184|emb|CAE77688.1| DNA gyrase subunit B [Bdellovibrio bacteriovorus HD100]
          Length = 806

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 237/624 (37%), Positives = 357/624 (57%), Gaps = 29/624 (4%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           +     +Y A SI++LEGLE VR RPGMYIG T  K  HHL  E++DN++DE +AGY   
Sbjct: 2   SAEEQKSYSADSIQVLEGLEAVRKRPGMYIGDTAFKGYHHLVYEIVDNSVDEHLAGYCKK 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I VS++ +  +TV D+GRGIPV    K   KS LE+++T LHAGGKFD   Y++SGGLHG
Sbjct: 62  ISVSINADESITVEDDGRGIPVATQ-KQTGKSALELVMTVLHAGGKFDGGGYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALSD + V V R+   + Q + RG  L+P+ +  +   K GT++TF+PD  IF
Sbjct: 121 VGASVVNALSDRVSVEVQREGHFWRQNYERGKILAPVAQ-GETTTKTGTKVTFKPDRTIF 179

Query: 217 GDKA-GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
            D+   +D   L    +  A+L+  +    + ++         +K++F +  G+  +++ 
Sbjct: 180 KDETLSYDFTTLANRFRELAFLNAGLHISLTDER-------NGKKQDFQYSEGVAEFVKY 232

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             +++  + +E+   K EK       VE A+ W +     + +YCN I T EGGTH  G 
Sbjct: 233 MNQSKKSLHNEVVYFKGEKDNV---EVEIAMQWNDSYSESVFTYCNNINTHEGGTHLVGF 289

Query: 335 RVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR    YA      +    ++  +D+      ++SV +REP+F GQTKTKL + + 
Sbjct: 290 RAALTRTTNAYATEKNLLKDLKANLEGEDIREGLAAVISVKVREPQFEGQTKTKLGNAEV 349

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
           +  VE  + +    ++ +NP  A  ++   +E +  R   RK R+   RKT +    LPG
Sbjct: 350 KGIVETLVNEKLADWMDRNPSVAKNIIMKCVESARAREAARKARDLTRRKTVLDGGSLPG 409

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           K+ADC +      EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +KI +++
Sbjct: 410 KMADCQERDPALCELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKIISSE 469

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           +I  ++ ALG    +     + +RY K+IIMTDADVDG+HI +LLLTFFY++M  ++E+ 
Sbjct: 470 EIKVIISALGTGIGKDNVNVDKIRYHKIIIMTDADVDGSHIMTLLLTFFYRQMPLVLERG 529

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG-EMLAS-QL 628
           ++++  PPL+R  +G +  Y  +E    + L      G G  +I      G E L    L
Sbjct: 530 YVYIAQPPLYRAKKGKEETYLKNEAALTEYL---LSSGLGNFKIK-----GKESLPEKDL 581

Query: 629 KETAMDANKRT-LLRVEINKDLNS 651
           ++  ++  +   LLRV   K    
Sbjct: 582 RQLILNIQRFNDLLRVSSKKYDKD 605



 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 4/91 (4%)

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
           E+         +  K  I I R+KGLGEM   QL ET ++   RTLL+V I+  +     
Sbjct: 719 ENYNDFYTHVMESTKKGIYIQRYKGLGEMNPEQLWETTLNKENRTLLKVTIDDAV----A 774

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
             ++ + LMG   + R +FI + A     + 
Sbjct: 775 ADETFSILMGEMVEPRRQFIHDNALLARSLD 805


>gi|28197950|ref|NP_778264.1| DNA gyrase subunit B [Xylella fastidiosa Temecula1]
 gi|182680577|ref|YP_001828737.1| DNA gyrase subunit B [Xylella fastidiosa M23]
 gi|28056010|gb|AAO27913.1| DNA gyrase subunit B [Xylella fastidiosa Temecula1]
 gi|182630687|gb|ACB91463.1| DNA gyrase, B subunit [Xylella fastidiosa M23]
 gi|307579031|gb|ADN63000.1| DNA gyrase subunit B [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 814

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 230/571 (40%), Positives = 342/571 (59%), Gaps = 18/571 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           YD+S I +L GL+ VR RPGMYIG   D   LHH+  EV+DN++DE +AG+A+ I V + 
Sbjct: 16  YDSSKITVLRGLDAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDEALAGHADSILVKIH 75

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G ++V DNGRGIPV+ H K    S  E+ILT LHAGGKFD+++Y++SGGLHGVG+SVV
Sbjct: 76  IDGSVSVSDNGRGIPVDIH-KEEGVSAAEVILTVLHAGGKFDDNSYKVSGGLHGVGVSVV 134

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+ L + + R    + Q++  G P  PL++  +V  KRGT + F+P  +IF D   F
Sbjct: 135 NALSERLWLDIWRDGYHYQQEYVLGEPQYPLKQL-EVSAKRGTTLRFKPAKEIFSDV-EF 192

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  ++L+  +K     ++          +++F++ GG++++++   + ++ 
Sbjct: 193 HYENLAKRLRELSFLNSGLKVSLIDERG------EGRRDDFHYEGGIRSFVEHLAQLKTP 246

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +   + +   E  G     V+ A+ W +     +  + N I   +GGTH +G R ALTR 
Sbjct: 247 LHPNVISVTGEHNGI---VVDAALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRAALTRT 303

Query: 342 IKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +  Y E     R   I    DD+    + +LSV + EP F+ QTK KLVS D +  VE  
Sbjct: 304 LGNYIEQNGVARQAKITFSGDDMREGMIAVLSVKVPEPSFSSQTKEKLVSSDVKPAVEAT 363

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458
                + +L +NP EA  +   +++ +  R   RK R++ R+   +    LPGKLADC +
Sbjct: 364 FGLRLEEFLQENPNEARAIAGKIVDAARAREAARKARDLTRRKGVLDIAGLPGKLADCQE 423

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +ELFIVEGDSAGGSAKQ RNR NQAVLPLRGKILNV  A  +++ ++ ++  L+ 
Sbjct: 424 KDPAMSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLSSAEVGTLIT 483

Query: 519 ALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
           ALG    + +Y  + LRY +VIIMTDADVDG+HI +LLLTFFY++M +LIE+ H+++  P
Sbjct: 484 ALGTGIGKDEYNPDKLRYHRVIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIGLP 543

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           PL+++ QG   +Y  D+      L      G
Sbjct: 544 PLYKLKQGKSELYLKDDIALNVYLANSAVEG 574



 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 11/107 (10%)

Query: 581 RITQGTKSVY--AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           +I +GTKS       +      L E  K G+   +I RFKGLGEM   QL +T ++ + R
Sbjct: 716 KIVRGTKSQSIECFGDAQ--AWLLEEAKKGR---QIQRFKGLGEMNPEQLWDTTVNPDTR 770

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            LL+V I   +          + LMG   + R  FI+  A  +  + 
Sbjct: 771 RLLQVCIEDGI----AADQIFSTLMGDVVEPRRGFIENNALKVTRLD 813


>gi|88608222|ref|YP_506597.1| DNA gyrase, B subunit [Neorickettsia sennetsu str. Miyayama]
 gi|88600391|gb|ABD45859.1| DNA gyrase, B subunit [Neorickettsia sennetsu str. Miyayama]
          Length = 783

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 210/573 (36%), Positives = 317/573 (55%), Gaps = 15/573 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +Y A SI++L+GLE VR RPGMYIG TD+   LH +  EV+DN++DE +AGY   IEV +
Sbjct: 5   DYTADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHQMVYEVVDNSVDESLAGYCTAIEVVI 64

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           D +G ++V DNGRG+P + H      S  E+I+T LHAGGKFD S+Y++SGGLHGVG+SV
Sbjct: 65  DVDGSISVEDNGRGMPTDMH--GEGVSAAEVIMTQLHAGGKFDQSSYKVSGGLHGVGVSV 122

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALSD L +T+ R   +   +F  G  +  L    +  +K GT + F P    F +   
Sbjct: 123 VNALSDWLKLTIYRDGKVHFAEFENGETVRSLSVTGECGDKTGTLVHFLPSRSTFKNTTE 182

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
              + L    +  ++L+  ++      +    K     K  F+  GG + ++     ++ 
Sbjct: 183 VSFSTLENRFRELSFLNPGLRISLLDMR----KGSSTGKVVFFSSGGTEEFVAYLDRSKQ 238

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTR 340
            I S          G     ++ ++ W +     +  + N I   +GGTH + LR A+TR
Sbjct: 239 PIHSTPIRVVG---GVDSIAIDVSMQWNDSYYENVLCFTNNIKQKDGGTHLAALRSAMTR 295

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +  Y        K  + +  +D+      ILSV + +P+F+ QTK KL+S + +  +E 
Sbjct: 296 VMHNYIVKENLIKKDKVVVSGEDVREGLSAILSVKLPDPKFSSQTKEKLISSEVKPVIEK 355

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            + D    +L +NP  A  +   V+E +  R   +K R+   RK  +    LPGKLADC 
Sbjct: 356 IVSDALASWLEENPSSARVIARKVVESALAREAAKKARDLTRRKGGLEITTLPGKLADCQ 415

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           +     +EL IVEGDSAGGSAKQ R+R  QAVLPLRGKILNV      K+  + +I +L+
Sbjct: 416 EKSPELSELLIVEGDSAGGSAKQGRDRKTQAVLPLRGKILNVEKTRFHKVIGSAEIGNLI 475

Query: 518 QALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
            ALG      ++  + +RY K+IIMTDADVDG HI +LLLTFF++    ++E+ +L++  
Sbjct: 476 AALGTSIGEEEFNIDKIRYHKIIIMTDADVDGLHIRTLLLTFFFRYARPIVERGYLYIAQ 535

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK 609
            PL+++ +    VY  D+   ++ L +    GK
Sbjct: 536 TPLYKVMRKGADVYLRDDAALEEYLLDRIVKGK 568



 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 7/97 (7%)

Query: 592 HDEEHKQKILEEFKKHG---KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648
            +      IL   +      +  + + RFKGLGEM   QL  T +D + RT+ +V I + 
Sbjct: 690 FNNGEYHSILAFIRDADSVARAGMVLQRFKGLGEMNPEQLWSTTLDPSNRTIFKVTIEE- 748

Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
                      + LMG     R  FI   A    ++ 
Sbjct: 749 ---AAVADQMCSMLMGDAVGPRRDFIVNNALNASNID 782


>gi|311103227|ref|YP_003976080.1| DNA gyrase subunit B [Achromobacter xylosoxidans A8]
 gi|310757916|gb|ADP13365.1| DNA gyrase, B subunit [Achromobacter xylosoxidans A8]
          Length = 815

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 224/577 (38%), Positives = 345/577 (59%), Gaps = 17/577 (2%)

Query: 36  ANQSASDN-YDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGY 93
            N +  ++ Y A SI++L+GLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AGY
Sbjct: 5   QNTTPENSGYGADSIKMLKGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEALAGY 64

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFP-NKSTLEIILTTLHAGGKFDNSTYEISG 152
            + I V++  +  ++V DNGRGIP + H     ++S  EI++T LHAGGKFD ++Y++SG
Sbjct: 65  CDDIVVTIHTDNSISVTDNGRGIPTDIHKDDEFHRSAAEIVMTELHAGGKFDQNSYKVSG 124

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+S VNALS+ L +T+ R   +   +F +G  ++PL       +KRGT + F  D
Sbjct: 125 GLHGVGVSCVNALSEWLRLTIRRNGEVHQMEFRQGERVAPLAVTG-TTDKRGTEVRFLAD 183

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P I  +   +    L K  +  ++L+  VK      ++  E       E F F GG+K +
Sbjct: 184 P-IIFNNIEYHYEILSKRLRELSFLNNGVKIRLIDQRQGKE-------ENFAFSGGVKGF 235

Query: 273 LQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++    +++++   +F+  TE   G     VE A+ W +     +  + N I   +GG+H
Sbjct: 236 VEYINRSKTVLHPNVFSVTTESSAGGVPVGVEVAMQWNDSYSESVLCFTNNIPQRDGGSH 295

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +GLR A+TR I KY    +   K  +    DD+      +LSV + EP+F+ QTK KLV
Sbjct: 296 LTGLRAAMTRIINKYIADNELAKKAKVETSGDDMREGLACVLSVKVPEPKFSSQTKDKLV 355

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKL 447
           S + +  VE A+    + +L++NPI+A  L   ++E +  R   RK RE+ R+ + +   
Sbjct: 356 SSEVRPAVEEAVARTLESWLLENPIDAKALCAKIVEAARAREAARKAREMTRRKSVLEGA 415

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +      EL+IVEGDSAGGSAKQ R+R  QA+LPLRGK+LNV  A  +++
Sbjct: 416 GLPGKLADCQEKDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARFDRL 475

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             ++QI  L+ ALG      +  + LRY ++IIMTDADVDGAHI +LLLT  Y++M +L+
Sbjct: 476 IASEQIATLITALGTSIGPDFNVDKLRYHRLIIMTDADVDGAHIRTLLLTLLYRQMPELV 535

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           ++ ++++  PPL+++  G +  Y  D++ + + + + 
Sbjct: 536 QRGYVYIAQPPLYKVKVGREERYLKDDQEEAQFMLQL 572



 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 4/94 (4%)

Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652
                ++ ++  +      I   R+KGLGEM   QL ET MD   R LLRV+I   +   
Sbjct: 726 TVSDFREAMQWLRSEADRSISKQRYKGLGEMNPEQLWETTMDPKVRRLLRVQIEDAI--- 782

Query: 653 KDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
               +    LMG   + R  FI+  A    ++  
Sbjct: 783 -AADEVFTTLMGDDVEPRRNFIETHALSAGNIDA 815


>gi|242310229|ref|ZP_04809384.1| DNA gyrase subunit B [Helicobacter pullorum MIT 98-5489]
 gi|239523526|gb|EEQ63392.1| DNA gyrase subunit B [Helicobacter pullorum MIT 98-5489]
          Length = 772

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 232/594 (39%), Positives = 337/594 (56%), Gaps = 26/594 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y  SSI++L+GLE VR RPGMYIG T+   LHHL  EV+DN++DE +AGY N I ++L
Sbjct: 4   KQYSGSSIKVLKGLEAVRKRPGMYIGDTNINGLHHLIYEVVDNSIDEAMAGYCNEISITL 63

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   + DNGRGIPV+ HP   N     ++LT LHAGGKFD  +Y++SGGLHGVG+SV
Sbjct: 64  TKEGSAIIKDNGRGIPVDIHP-TENIPAATVVLTVLHAGGKFDQDSYKVSGGLHGVGVSV 122

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  L +T+ +   I+ Q F++GIP   L    + +   GT I F PD  IF     
Sbjct: 123 VNALSKSLQMTIYKNGQIYRQNFAQGIPQDELTIIGECKE-NGTTIEFIPDGTIFEVT-E 180

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F    L K  +  AYL+ ++   +  +++  E       E ++F GGL  ++    + + 
Sbjct: 181 FQREILAKRFKELAYLNKQITIHFKDERDNFE-------ETYHFEGGLNQFVSDLNK-KP 232

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
           LIS+ I     E     +  + +   +   + ++ S+ N I T +GGTHESG R+ LTR 
Sbjct: 233 LISTIISFEGLENDVEMQIALAYNDGF---DEKVLSFVNNIRTIDGGTHESGFRMGLTRV 289

Query: 342 IKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  Y E   N  ++   I  +D+    + I+SV + +P+F GQTK KL S   +  V+  
Sbjct: 290 ITNYIEANANAREKDSKITGEDIREGLIAIVSVKVVDPQFEGQTKGKLGSSFVRPIVQKL 349

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
             +    +  +NP EA  +++  +  +  R   +K RE   +K       LPGKLADC  
Sbjct: 350 TFEKLTKFFEENPNEAKAIMQKALLAARGREAAKKARELTRKKETFSVGTLPGKLADCQS 409

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  +  +KI  +++I +L+ 
Sbjct: 410 KDPSISEIYLVEGDSAGGSAKQGRDRVYQAILPLRGKILNVEKSRLDKILKSEEIKNLIT 469

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALGC     +    +RY K+IIMTDADVDG+HI +LL+TFF++ +  +IE  +L++  PP
Sbjct: 470 ALGCGIGEDFDISKIRYNKIIIMTDADVDGSHIQTLLMTFFFRYLRGIIESGYLYIAQPP 529

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           L+R  +G K +Y  DE+   + L E   +G    E     G+G      L E  
Sbjct: 530 LYRFKKGKKEIYLKDEKALSEYLIE---NGIENFEFQ---GIGT---KDLIEFF 574



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           ++LE+ ++  K   +I R+KGLGEM   QL ET M    R L+RVEI      +++  D 
Sbjct: 689 EMLEKIEESSKKGADIQRYKGLGEMNPEQLWETTMTPENRRLIRVEI----KDVEEASDV 744

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            +  MG + + R ++IQ  A  +  + 
Sbjct: 745 FSLFMGDEVEPRREYIQAHAKDVKHLD 771


>gi|225629988|ref|YP_002726779.1| DNA gyrase, B subunit [Wolbachia sp. wRi]
 gi|225591969|gb|ACN94988.1| DNA gyrase, B subunit [Wolbachia sp. wRi]
          Length = 809

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 226/575 (39%), Positives = 339/575 (58%), Gaps = 13/575 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
             + +  ++Y+A +I+IL GL+ VR RPGMYIG TD+   LHH+  EVIDNA+DE +AGY
Sbjct: 10  KRSNTMENSYNADAIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVIDNAIDESLAGY 69

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
            + IEVS++ +G ++V DNGRGIP + H +    S  E+I+T LHAGGKFD++TY++SGG
Sbjct: 70  CDKIEVSINKDGSVSVTDNGRGIPTDIHEE-EGISAAEVIMTQLHAGGKFDSNTYKVSGG 128

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVGISVVNALS  L +T+ R       +F  G  + PL+   +  NKRGT++TF P  
Sbjct: 129 LHGVGISVVNALSSWLELTIWRNKKEHFMRFEDGESIEPLKVVNENTNKRGTKVTFMPST 188

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTY 272
           + F     F  + L    +  A+L+  +       + E   +    +  +     G   +
Sbjct: 189 ETFNGIN-FSYSTLESRIRELAFLNSNIDITLRDLRNEPYTESHFNQSNQSKDNFGTANF 247

Query: 273 LQTKLENRSLISSE-IFTGKTEKKGTH-RGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330
           +Q   +N++ ++      G  E  G     ++EW  ++      +  + N I   +GGTH
Sbjct: 248 VQYLDKNKTHVTKIASMKGDAEDLGISLEISMEWNDSY---YENMLCFTNNIRQRDGGTH 304

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR I  YA       K  +++  +D+      +LS+ + +P+F+ QTK KLV
Sbjct: 305 LAGFRSALTRCINTYATNEGFLKKAKVNLTGEDVREGLTCVLSLKMPDPKFSSQTKDKLV 364

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447
           S +A+  VE+ + D     L  +P  A  ++E  I  ++ R   RK RE V  K  I   
Sbjct: 365 SSEARAVVESIVSDKLSTILETDPKLAASIVERAIRSAKGREAARKARELVKSKNNIDIA 424

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +ELFIVEG+SAGG+AKQ RNR  QAVL LRGKILNV     ++I
Sbjct: 425 TLPGKLADCQEKAPELSELFIVEGNSAGGTAKQGRNRKTQAVLALRGKILNVERVSLDRI 484

Query: 508 RNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
            ++ +I  L+ A+G    S++ + E  RY K+IIMTDADVDG+HI +L+LTFF++ M ++
Sbjct: 485 FSSAEIGSLITAIGAGIGSEHFDIEKARYHKIIIMTDADVDGSHIRTLILTFFFRHMREV 544

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           IE+ +L++  PPL+++T+  K  Y  D+E  ++ +
Sbjct: 545 IEKGYLYIAQPPLYKVTKNAKDTYIKDDETFEEYI 579



 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 4/78 (5%)

Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667
           GK  + + RFKGLGEM A QL +T ++   RTLL+VEI       ++     + LMG   
Sbjct: 735 GKKGLTLQRFKGLGEMNADQLWDTTLNPEARTLLKVEI----KDCEEADSIFSILMGDIV 790

Query: 668 DERFKFIQERASFIDDVG 685
           + R  FI   A  + DV 
Sbjct: 791 EPRRDFINSNALNVHDVD 808


>gi|269836116|ref|YP_003318344.1| DNA topoisomerase (ATP-hydrolyzing) [Sphaerobacter thermophilus DSM
           20745]
 gi|269785379|gb|ACZ37522.1| DNA topoisomerase (ATP-hydrolyzing) [Sphaerobacter thermophilus DSM
           20745]
          Length = 674

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 219/652 (33%), Positives = 331/652 (50%), Gaps = 22/652 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y  + IR+LEG+E +R RPGMYIG T    LHHL  E +DNA DE IAGY   I V +D 
Sbjct: 34  YSGADIRVLEGIEAIRTRPGMYIGSTGTTGLHHLIWEALDNATDEAIAGYGKNIWVEIDR 93

Query: 104 NGFLTVVDNGRGIPVE-NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
           +G++TV D  RGIP +          T  +I+T  H+GGKF+   Y+ +GGLHGVG +V+
Sbjct: 94  DGWVTVRDEARGIPFDPKEINGKTLPTATVIMTVPHSGGKFEQGAYKTAGGLHGVGATVI 153

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK-AG 221
           NALS+ L +T+ R    F Q F+RG+P            + GT++ +  D +IF D   G
Sbjct: 154 NALSERLELTIWRDGQQFFQTFTRGVP-GKHTITPCDPKRTGTQLRWLFDREIFADPAVG 212

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +    +    ++ AYL+  +       +   +  G   ++ F+   GL  Y++       
Sbjct: 213 YQRDVVESRLRAAAYLNRGIAYHL---RIWDDDAGEMVEQTFHSERGLVDYVEELRPRDK 269

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTR 340
                        +      +E A+     E   + S+ N + T EGGTHESG + ALT+
Sbjct: 270 ESQPLFKEVVAIAETRDDVVIEVAVQPNRGERTRVVSFANGVRTIEGGTHESGFQAALTK 329

Query: 341 GIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
            +   A      +     +D +    V I+SV +  P+F GQTK +L +      V + +
Sbjct: 330 VLNDQAIRLGVTKKREFDADLIREGLVAIVSVKLTNPQFEGQTKNRLTNSGVDGIVRSVV 389

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR------EVNRKTAIRKLRLPGKLA 454
            D    ++  N   A + +  + +R + R   +         +  R  A+    +  K  
Sbjct: 390 GDALTRWMEANESAAREWVRTLEQRRKARDAAKAAARLVMTGKSRRNGALLDAAISDKFI 449

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
            C+       EL++VEGDSAGGSA Q R    QA+L L GK LNVA A  E++  N++I 
Sbjct: 450 PCNTKDPERAELYLVEGDSAGGSASQGRFSDFQAILKLSGKPLNVARANIERVAKNEEIR 509

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            L+Q +G  +R  +    LR+ K+IIMTDADVDG HI +LLLT F QE+  LIE+ H++L
Sbjct: 510 TLLQVIGTGSRQAFDISRLRFHKIIIMTDADVDGMHIQALLLTLFLQELPQLIERGHIYL 569

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
            +PPL+ + Q  K  +  D+E  ++ +    K  KG  E+ R+KGLGEM   +L+ET MD
Sbjct: 570 AAPPLYSVRQNGKVTWLRDDEALREWM----KGRKGPFELKRYKGLGEMNPRELRETTMD 625

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQERASFIDDVG 685
             +R L RV +          +  + +LM    A+ R  F+ +RA    ++ 
Sbjct: 626 PERRRLRRVTLED----AALAERMVYELMEDTNAEGRRTFLAQRARKYQEID 673


>gi|237747157|ref|ZP_04577637.1| DNA gyrase subunit B [Oxalobacter formigenes HOxBLS]
 gi|229378508|gb|EEO28599.1| DNA gyrase subunit B [Oxalobacter formigenes HOxBLS]
          Length = 830

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 221/589 (37%), Positives = 330/589 (56%), Gaps = 30/589 (5%)

Query: 30  PDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDE 88
             +     Q   + Y  SSI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE
Sbjct: 2   SQNTQNEVQENGNAYGESSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDE 61

Query: 89  VIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDN 145
            +AGY   I+V+L  +  ++VVDNGRG+P          P +S  EI++T LHAGGKFD 
Sbjct: 62  ALAGYCTEIQVTLHADNSVSVVDNGRGVPTGIKFDDKNTPKRSAAEIVMTELHAGGKFDQ 121

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL-----------SPLE 194
           ++Y++SGGLHGVG+S VNALS  L +T+ R        FS G+P                
Sbjct: 122 NSYKVSGGLHGVGVSCVNALSTTLQLTIWRDGKEHYMDFSHGLPQNAAVEIINGVECSPI 181

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
           K     +++GTR+ F PD  IF     F    L +  +  ++L+  V+   +  +     
Sbjct: 182 KVIGDSDRQGTRVQFWPDASIFTTV-EFQYEVLARRIRELSFLNNGVRIRLTDQR----- 235

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK--KGTHRGTVEWAIAWCEEN 312
               ++E F + GG + +++     +S++   IF    E+  +      V+ ++ W +  
Sbjct: 236 --TGKEEIFAYEGGTRGFVEYINRGKSVLHPTIFQATGERISELDTPIYVDISMQWNDSY 293

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369
             ++  + N I   +GGTH +GLR A+TR I +Y E  +   K  + +  DD+      +
Sbjct: 294 NEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINRYIEENELAKKAKVDVTGDDMREGLTCV 353

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           LSV + EP+F+ QTK KLVS + +  VE  +      +L + P +A  +   ++E +  R
Sbjct: 354 LSVKVPEPKFSSQTKDKLVSSEVRGPVEEIITKTLTDFLQEKPNDAKIICSKIVEAARAR 413

Query: 430 LRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
              RK RE+ R+   +  L L  KLADC +     +EL++VEGDSAGGSAKQ R+R  QA
Sbjct: 414 EAARKARELTRRKGVLDGLGLSAKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRRFQA 473

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVD 547
           +LPLRGK+LNV  +  EK+ +++QI  L+  LG      ++  E LRY ++IIMTDADVD
Sbjct: 474 ILPLRGKVLNVEKSRYEKMLSSEQITTLIATLGTSIGPDEFNIEKLRYHRIIIMTDADVD 533

Query: 548 GAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEH 596
           GAHI +LLLT FY++M  L+E+ ++++  PPL++I  G    Y  D+  
Sbjct: 534 GAHIRTLLLTLFYRQMPQLVERGYVYIAQPPLYKIKNGKDERYLKDDLE 582



 Score =  131 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
             + ++  +   +  I   R+KGLGEM   QL ET MD + R LL+V I   +       
Sbjct: 745 FHQAMQWLRTEAERGISKQRYKGLGEMNPDQLWETTMDPSMRRLLKVRIEDAI----AAD 800

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+  A    ++ 
Sbjct: 801 QIFTTLMGDNVEPRRAFIENHALLAGNID 829


>gi|121891|sp|P22118|GYRB_NEIGO RecName: Full=DNA gyrase subunit B
 gi|150257|gb|AAA88327.1| DNA gyrase [Neisseria gonorrhoeae]
          Length = 781

 Score =  480 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 223/600 (37%), Positives = 334/600 (55%), Gaps = 36/600 (6%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95
            +   + Y A SI++LEGLE V  RPGMYIG T D   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   TEQKHEEYGADSIQVLEGLEAVPKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V DNGRG+P   HPK   +S  E+I+T LHAGGKFDN++Y+ISGGLH
Sbjct: 62  KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD + +T+ R       +F RG    PL+      +K+GT + F    + 
Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKIVGD-SDKKGTTVRFLAGTET 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           FG+   +    L K  +  ++L+  V    + +++        + E F   GG+  ++Q 
Sbjct: 180 FGNI-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
               ++ +  +IF    EK G    +VE A+ W +     +  + N I   +GGTH + L
Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R  +TR I  Y E  +   K  +    DD+      +LSV + +P+F+ QTK KLVS + 
Sbjct: 289 RQVMTRTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEI 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPG 451
              V   +      +L +NP EA  +   +++ +  R   RK RE+ R+  +   L LPG
Sbjct: 349 GPVVNEVINQALTDFLEENPNEAKIITGKIVDAARARQAARKAREITRRKGLMDGLGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEG+SAGGSA Q R+R  QA+LPL+GKILNVA+          
Sbjct: 409 KLADCQEKDPALSELYLVEGNSAGGSAMQGRDRKFQAILPLKGKILNVATL--------- 459

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
            I  L   +G   + ++  E LRY ++IIMTDADVDGAHI +LLLTFFY++M DL+E+ +
Sbjct: 460 -ITALGAGIG---KEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPDLVERGY 515

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPL++   G +  Y  DE  K + L          +   R      +  ++L +T
Sbjct: 516 IYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVSDGR-----TIEGAELADT 570



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 8/106 (7%)

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           ++ +G      +D +  +  L+      +  + I R+KGLGEM   QL ET MD   R L
Sbjct: 684 KLYKGENE---YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPTVRRL 740

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           L+V I   +       +    LMG + + R  FI+  A    ++  
Sbjct: 741 LKVRIEDRI-----ADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 781


>gi|295698376|ref|YP_003603031.1| DNA gyrase, B subunit [Candidatus Riesia pediculicola USDA]
 gi|291157393|gb|ADD79838.1| DNA gyrase, B subunit [Candidatus Riesia pediculicola USDA]
          Length = 805

 Score =  480 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 228/566 (40%), Positives = 341/566 (60%), Gaps = 17/566 (3%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98
            +D Y++S+I++L+GLE VR RPGMYIG TD+   LHH+  EVI N++DE + GY N I+
Sbjct: 2   KTDIYNSSNIKVLKGLEAVRKRPGMYIGDTDDGTGLHHMVFEVIYNSIDEALEGYCNRID 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           +++  +  ++V+DNGRGIP + H      S  E+I+T LHAGGKFDN TY++SGGLHGVG
Sbjct: 62  LTIHEDNSISVLDNGRGIPTDLH--QEGVSAAEVIMTFLHAGGKFDNQTYKVSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           ISVVNALS  L + + R+   + Q +  G P+SPL +       RGT I F PD +IF +
Sbjct: 120 ISVVNALSSRLKLVIFREGKKYQQNYKFGKPISPLTEIG-TTKVRGTFIHFWPDLQIFKN 178

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F  + LL   Q  ++L+  +    +  +   +     +       GG++++++    
Sbjct: 179 VHTFKYSSLLNRMQELSFLNSNISIHLTDIRNNKKIRLRNK-------GGIRSFIKYLNS 231

Query: 279 NR-SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337
            +  + S   +  + EK+ +    V+W   + E    +  Y N I   EGG+H  G R A
Sbjct: 232 QKIPIHSKIFYFFEKEKETSIEVAVQWNEGFQEN---VLCYTNNIPQKEGGSHLIGFRSA 288

Query: 338 LTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           +TR +KKY +    K    II +D       ++SV    P+F+ QTK KLV+ + +  VE
Sbjct: 289 ITRTLKKYIQKQPKKNKTKIIGEDTREGLTAVISVKTPNPKFSSQTKDKLVTSEIKSIVE 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT-AIRKLRLPGKLADC 456
           N +    D YL++NP +   +LE ++  +  R   +K RE+NRK  ++    LPGKLADC
Sbjct: 349 NLVSKNLDEYLLENPSDTKSILEKILSCARTREAAKKAREINRKKGSMILSNLPGKLADC 408

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  +   +I N+Q+++ L
Sbjct: 409 REKNPELSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKSQLNRILNSQEVVSL 468

Query: 517 VQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
             ALGC     ++  + LRY  VIIMTDADVDG+HI +LLLTFFY++M ++I++ H+++ 
Sbjct: 469 TTALGCGIGEKEHNPDKLRYHSVIIMTDADVDGSHIRTLLLTFFYRQMPEIIKRGHIYIA 528

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKIL 601
            PPL++I +G  + Y  DE    + L
Sbjct: 529 QPPLYKIKKGKMNHYIQDELKMNEYL 554



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 7/107 (6%)

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           +  + +G  ++        ++ L    K     + I R+KGLGEM   QL ET M+   R
Sbjct: 705 IIYLKKGKNNLQFFS---FEEALIWLYKKSLKGLVIQRYKGLGEMNPKQLWETTMNPKTR 761

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            L++V+I   +    +     + LMG + ++R  FI++ A  + ++ 
Sbjct: 762 KLVQVKIKDAI----EANRLFSILMGNEVEKRRYFIEKNAIEVKNID 804


>gi|42520018|ref|NP_965933.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42409755|gb|AAS13867.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 795

 Score =  480 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 224/569 (39%), Positives = 336/569 (59%), Gaps = 13/569 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
            ++Y+A +I+IL GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY + IEV
Sbjct: 2   ENSYNADAIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDESLAGYCDKIEV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           S++ +G ++V DNGRGIP + H +    S  E+I+T LHAGGKFD++TY++SGGLHGVGI
Sbjct: 62  SINKDGSVSVTDNGRGIPTDIHEE-EGISAAEVIMTQLHAGGKFDSNTYKVSGGLHGVGI 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS  L + + R       +F  G  + PL+   +  NKRGT++TF P  + F   
Sbjct: 121 SVVNALSSWLELIIWRNKKEHFMRFEDGESIEPLKVVNENTNKRGTKVTFMPSTETFNGI 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
             F  + L    +  A+L+  +       + E   +    +  +     G   ++Q   +
Sbjct: 181 N-FSYSTLESRIRELAFLNSNIDITLRDLRNEPYTESHFNQSNQSKDNFGTANFVQYLDK 239

Query: 279 NRSLISSE-IFTGKTEKKGTH-RGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRV 336
           N++ ++      G  E  G     ++EW  ++      +  + N I   +GGTH +G R 
Sbjct: 240 NKTHVTKIASMKGDAEDLGISLEISMEWNDSY---YENMLCFTNNIRQRDGGTHLAGFRS 296

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA       K  +++  +D+      +LS+ + +P+F+ QTK KLVS +A+ 
Sbjct: 297 ALTRCINTYATNEGFLKKAKVNLTGEDVREGLTCVLSLKMPDPKFSSQTKDKLVSSEARA 356

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            VE+ + D     L  +P  A  ++E  I  ++ R   RK RE V  K  I    LPGKL
Sbjct: 357 VVESIVSDKLSTILETDPKLAASIVERAIRSAKGREAARKARELVKSKNNIDIATLPGKL 416

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +ELFIVEG+SAGG+AKQ RNR  QAVL LRGKILNV     ++I ++ +I
Sbjct: 417 ADCQEKAPELSELFIVEGNSAGGTAKQGRNRKTQAVLALRGKILNVERVSLDRIFSSAEI 476

Query: 514 MDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ A+G    S++ + E  RY K+IIMTDADVDG+HI +L+LTFF++ M ++IE+ +L
Sbjct: 477 GSLITAIGAGIGSEHFDIEKARYHKIIIMTDADVDGSHIRTLILTFFFRHMREVIEKGYL 536

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++  PPL+++T+  K  Y  D+E  ++ +
Sbjct: 537 YIAQPPLYKVTKNAKDTYIKDDETFEEYI 565



 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 4/78 (5%)

Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667
           GK  + + RFKGLGEM A QL +T ++   RTLL+VEI       ++     + LMG   
Sbjct: 721 GKKGLTLQRFKGLGEMNADQLWDTTLNPEARTLLKVEI----KDCEEADSIFSILMGDIV 776

Query: 668 DERFKFIQERASFIDDVG 685
           + R  FI   A  + DV 
Sbjct: 777 EPRRDFINSNALNVHDVD 794


>gi|58579627|ref|YP_198643.1| DNA gyrase subunit B [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58424221|gb|AAW73258.1| DNA gyrase subunit B [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 874

 Score =  480 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 229/590 (38%), Positives = 340/590 (57%), Gaps = 18/590 (3%)

Query: 25  KSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVID 83
            +G           + +  YD+S I +L GLE VR RPGMYIG   D   LHH+  EV+D
Sbjct: 56  ANGTRMTDEQNTPPTPNGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVD 115

Query: 84  NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143
           N++DE +AG+A+ I   +  +G + V DNGRG+PV+ H K    S  E+ILT LHAGGKF
Sbjct: 116 NSVDEALAGHADDIVAKILVDGSVAVSDNGRGVPVDIH-KEEGVSAAEVILTVLHAGGKF 174

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS+ L + + R    + Q+++ G P  PL++ E     R
Sbjct: 175 DDNSYKVSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQLEASTK-R 233

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F+P   IF D   F    L +  +  ++L+  VK     ++          +++F
Sbjct: 234 GTTLRFKPSAAIFSDV-EFHYDILARRLRELSFLNSGVKITLIDERG------EGRRDDF 286

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           ++ GG++++++   + +S +   + +   E  G     V+ A+ W +     +  + N I
Sbjct: 287 HYEGGIRSFVEHLAQLKSPLHPNVISVTGEHNGI---VVDVALQWTDAYQETMYCFTNNI 343

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  Y E     +   +    DD+    + +LSV + +P F+
Sbjct: 344 PQKDGGTHLAGFRAALTRVLGTYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFS 403

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVN 439
            QTK KLVS D +  VENA       +L +NP EA  +   +++ +  R   RK      
Sbjct: 404 SQTKEKLVSSDVRPAVENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTR 463

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR NQAVLPLRGKILNV
Sbjct: 464 RKGALDIAGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNV 523

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
             A  +++  + Q+  L+ ALG    R +Y  + LRY ++I+MTDADVDG+HI +LLLTF
Sbjct: 524 ERARFDRMLASDQVGTLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTF 583

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           FY++M +LIE+ ++++  PPL+++ QG   +Y  D+      L      G
Sbjct: 584 FYRQMPELIERGYIYIGLPPLYKLKQGKSELYLKDDAALNAYLASNAVEG 633



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G KS            L +  K G+   ++ RFKGLGEM A QL ET ++ + R LL
Sbjct: 777 IVRGNKSHPITSFAQAHAWLLDEAKKGR---QVQRFKGLGEMNAEQLWETTVNPDTRRLL 833

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +          + LMG   + R  FI++ A  + ++ 
Sbjct: 834 QVRIEDAV----AADQIFSTLMGDVVEPRRDFIEDNALKVSNLD 873


>gi|296114068|ref|YP_003628006.1| DNA topoisomerase IV subunit B [Moraxella catarrhalis RH4]
 gi|295921762|gb|ADG62113.1| DNA topoisomerase IV subunit B [Moraxella catarrhalis RH4]
          Length = 601

 Score =  480 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 234/614 (38%), Positives = 346/614 (56%), Gaps = 23/614 (3%)

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133
            +HL  EVIDN++DE +AG+A  I V L  +G L+V D+GRG+P + HP+F N+S +E+I
Sbjct: 3   PNHLAQEVIDNSVDEALAGFARHIIVILHKDGSLSVEDDGRGMPTDIHPEF-NQSGVELI 61

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           LT LHAGGKF    Y++SGGLHGVGISVVNALS  + VTV R   + +  F  G P++ L
Sbjct: 62  LTRLHAGGKFSTENYQVSGGLHGVGISVVNALSTRVEVTVWRDGLMHTMAFEHGEPVTAL 121

Query: 194 EKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
              +   + KRGT++ F  D + F     F    L    ++KA L+  +   +  + E  
Sbjct: 122 IADKSANKKKRGTKVQFWVDGQYFDTP-KFSIKTLKHNLKAKAVLAAGLHIDFISEIEPN 180

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
           +       E + F  G+  YL  +L+    +  E F    E     RG   +A++W  E 
Sbjct: 181 D------SESWQFTDGVVQYLTEQLDGSDTLPKEPFYVSQEPTLGERGGATFALSWLAEG 234

Query: 313 PEI--TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGI 369
                 SY N I T +GGTH +GLR  +   ++++ ++     R I +  +D+      I
Sbjct: 235 GTPITESYVNLIPTAQGGTHVNGLRTGVLEALREFCDIHNLLPRQIKLSGEDVWDGVNYI 294

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           LS+   EP+F+GQTK +L S +A   V+   +D F  +L Q+P  A  + E  I ++ +R
Sbjct: 295 LSLKFVEPQFSGQTKERLSSREAAPLVQTLAKDAFSLWLNQHPDHAKAIAELAISKATKR 354

Query: 430 LRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
           L     ++V RK   +   LPGKL DC   +  G+ELF+VEG SAGGSAKQAR+ + QA+
Sbjct: 355 LA--TAQKVARKKVTQGPALPGKLWDCRGGLKEGSELFLVEGQSAGGSAKQARDNAFQAI 412

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549
           LPLRGKILN     S+ + ++Q+I D+  A+G    S     +LRY+K+ I+ DAD DG 
Sbjct: 413 LPLRGKILNAWEVSSDTVLSSQEIHDIAIAIGVDPASDDL-SELRYDKICILADADSDGL 471

Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK 609
           HIA+L+   F +    LIE  HL++  PPL+RI  G    YA D E  +++L      G 
Sbjct: 472 HIATLICALFVKHFPALIEAGHLYVAVPPLYRIDAGKDVYYALDNEELEQVLARL---GN 528

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-AD 668
            K +I+RFKGLGEM  SQLKET M+ + R L+R+    DL+    T   ++ L+  K + 
Sbjct: 529 KKTQITRFKGLGEMNPSQLKETTMNPDTRKLIRL----DLDDTASTNSIMDMLLAKKRSA 584

Query: 669 ERFKFIQERASFID 682
           +R ++++ +    D
Sbjct: 585 DRKRWLETKGDLAD 598


>gi|218887173|ref|YP_002436494.1| DNA gyrase subunit beta [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758127|gb|ACL09026.1| DNA gyrase, B subunit [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 798

 Score =  480 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 226/574 (39%), Positives = 325/574 (56%), Gaps = 21/574 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
                  Y A SI ILEGL  VR RP MYIG TD + LHHL  EV+DN++DE +AGY + 
Sbjct: 2   TTPTGQTYTADSITILEGLAAVRKRPAMYIGSTDARGLHHLVYEVVDNSIDEAMAGYCSR 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V L  +  +TV DNGRGIPV+ HPK   K  +E+++T LHAGGKFDN  Y++SGGLHG
Sbjct: 62  IVVKLHLDNSVTVSDNGRGIPVDLHPK-EGKPAVEVVMTKLHAGGKFDNDAYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+S VNALS+ L VTV R       +F+RG    PLE   +  N  GT + F+PD +IF
Sbjct: 121 VGVSCVNALSEWLEVTVRRDGKRHRMRFARGAVQGPLEFLGESANH-GTTVHFKPDEEIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                +    L K  +  +YL+  ++  ++ ++         E   F   GG++ +++  
Sbjct: 180 ET-VQYSYETLRKRFEELSYLNKGLEIEFTDERSA-------ETHVFRADGGIRQFVKDL 231

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
               S I   I  G+    G    TV++A+ +       + ++ N I T EGGTH +G +
Sbjct: 232 NSGESGIHPIID-GEGVTDGV---TVDFALQYNAGYKENVLTFANNIRTKEGGTHLAGFK 287

Query: 336 VALTRGIKKYAELT----QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            ALTR I  Y +      +  +   +  DD+      ++SV + +P+F GQTKTKL + +
Sbjct: 288 TALTRAINGYIKGQPDLVKKMKGTVLSGDDVREGLTSVVSVKLPQPQFEGQTKTKLGNSE 347

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
               V   + D  + +  +NP +A  +++  ++ +  R   R+ +E V RK A+    LP
Sbjct: 348 IAGLVAGIVYDKLNVHFGENPKDARLIIDKAVDAARARDAARRAKELVRRKGALSDNSLP 407

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC       +ELFIVEGDSAGGSAKQ R+ S QA+LPLRGKILN      +K+  N
Sbjct: 408 GKLADCQSKDPAESELFIVEGDSAGGSAKQGRDPSTQAILPLRGKILNTERTRFDKMLAN 467

Query: 511 QQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           +++  L+ A+G          + LRY KV+IMTDADVDGAHI +LLLTFF+++  +LI++
Sbjct: 468 KEVKALITAMGAGIGEDDTDYDKLRYHKVVIMTDADVDGAHIRTLLLTFFFRQYQELIDR 527

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEE 603
            HL++  PPL+R+       +  D+      L E
Sbjct: 528 GHLYIAQPPLYRVHSSRFEKFIKDDPELNAFLLE 561



 Score =  136 bits (343), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 4/80 (5%)

Query: 606 KHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT 665
              +  I I R+KGLGEM   QL  T M+   RTLLRV ++      ++  ++  +LMG 
Sbjct: 722 DEARKGINIQRYKGLGEMNPEQLWVTTMNPENRTLLRVTVDD----AEEASEAFEQLMGD 777

Query: 666 KADERFKFIQERASFIDDVG 685
           + + R +FI+  A  + D+ 
Sbjct: 778 RVEPRREFIERNALSVQDLD 797


>gi|190571487|ref|YP_001975845.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018889|ref|ZP_03334697.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357759|emb|CAQ55211.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995840|gb|EEB56480.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 790

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 229/584 (39%), Positives = 344/584 (58%), Gaps = 18/584 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
             NY+A +I+IL GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY + IEV
Sbjct: 2   ESNYNADAIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDESLAGYCSKIEV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           S++ +G ++V DNGRGIP + HP+    S  E+I+T LHAGGKFD++TY++SGGLHGVGI
Sbjct: 62  SINEDGSVSVTDNGRGIPTDIHPE-EGISAAEVIMTQLHAGGKFDSNTYKVSGGLHGVGI 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS  L +T+ R       +F  G  +  L+   +  NKRGTR+TF P    F   
Sbjct: 121 SVVNALSSWLELTIWRNKKEHFMRFEDGESIESLKIINENTNKRGTRVTFMPSTGTFSSI 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
             F  + L    +  A+L+  ++      + +   +    + +E     G   +++   +
Sbjct: 181 -DFSYSTLESRIRELAFLNSNIEIILRDLRNKPHVESHFNDSKESEDNFGTANFVRYLDK 239

Query: 279 NRSLISSEIFTGKTEKK--GTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRV 336
           N++ ++         K    +   ++EW  ++      +  + N I   +GGTH +G R 
Sbjct: 240 NKTHVTKIASIRDNVKDLGTSVEISMEWNDSY---YENMLCFTNNIRQRDGGTHLAGFRS 296

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA       K  +++  +D+      +LS+ + +P+F+ QTK KLVS +A+ 
Sbjct: 297 ALTRCINNYANNEGFLKKAKVNLTGEDVREGLTCVLSLKMPDPKFSSQTKDKLVSSEARA 356

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            VE+ + D     L  +P  A  ++E  I  ++ R   RK RE V  K  I    LPGKL
Sbjct: 357 VVESIVFDKLSTILETDPKLAASIVERAIRSAKGREAARKARELVKNKNNINIATLPGKL 416

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC + +   +ELFIVEG+SAGG+AKQ RNR  QAVL LRGKILNV  AG ++I ++ +I
Sbjct: 417 ADCQEKVPELSELFIVEGNSAGGTAKQGRNRKTQAVLALRGKILNVERAGLDRIFSSAEI 476

Query: 514 MDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ A+G    S++ + E  RY K+IIMTDADVDG+HI +L+LTFF++ M ++IE+ +L
Sbjct: 477 GSLITAIGAGIGSEHFDIEKTRYHKIIIMTDADVDGSHIRTLILTFFFRHMREVIEKGYL 536

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKI-----LEEFKKHGKGK 611
           ++  PPL+++T+  K  Y  D+E  ++      ++    +G GK
Sbjct: 537 YIAQPPLYKVTKNAKDTYIKDDETFEEYIVNSAIKRLTLNGVGK 580



 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 4/78 (5%)

Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667
           GK  + + RFKGLGEM A QL ET ++   RTLL+VEI       ++     + LMG   
Sbjct: 716 GKKGLTLQRFKGLGEMNADQLWETTLNPETRTLLKVEI----KDCEEADSIFSVLMGDIV 771

Query: 668 DERFKFIQERASFIDDVG 685
           + R  FI   A  + DV 
Sbjct: 772 EPRRDFINNNALNVHDVD 789


>gi|153002883|ref|YP_001377208.1| DNA gyrase, B subunit [Anaeromyxobacter sp. Fw109-5]
 gi|152026456|gb|ABS24224.1| DNA gyrase, B subunit [Anaeromyxobacter sp. Fw109-5]
          Length = 795

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 214/566 (37%), Positives = 320/566 (56%), Gaps = 16/566 (2%)

Query: 52  LEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVD 111
           LEGLE VR RP MYIG   E+ LHHL  EV+DN++DE +AG AN I V++  +  +T+VD
Sbjct: 2   LEGLEAVRKRPHMYIGDVGERGLHHLVYEVVDNSVDEAMAGRANEITVTIHADSSITIVD 61

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171
           NG GIP+  HP      TL+++LT LHAGGKF+++ Y++SGGLHGVG++ VNALS+ L  
Sbjct: 62  NGSGIPIGPHPSVKGMDTLDVVLTKLHAGGKFESNAYKVSGGLHGVGVTCVNALSEWLKA 121

Query: 172 TVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMT 231
            V R+  ++ Q++ RG P   +    + +  RGT+ITF+PD  IF     F    L    
Sbjct: 122 EVYREGKVWLQRYDRGTPAGKVTAVGETQR-RGTKITFKPDATIFEV-TEFSFETLSGRL 179

Query: 232 QSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGK 291
           +  A+L+  +      ++         +K EF F  G++ ++    ++R ++     + +
Sbjct: 180 RELAFLNAGLTITIEDERS-------GKKHEFLFKDGIREFVGYLNKSRDVLFQPPISLR 232

Query: 292 TEKKGTHRGT-VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            E +       VE A+ W +    ++ ++ N I   EGGTH  G + ALTR I  Y +  
Sbjct: 233 QEVETERGTALVEIALQWNDGYDEKVFAFANNIHNHEGGTHLIGFKAALTRTINAYGQKN 292

Query: 350 QNKRAIS---IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
              + +       DD+      ++S+ +    F GQTKTKL + +A+  VE  L +    
Sbjct: 293 NLFKDLKDELPSGDDMREGLAAVISIRLPGASFEGQTKTKLSNTEAKSMVETMLNERLGA 352

Query: 407 YLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTE 465
           +L +NP  A ++   V          R+ +  V RK A+    LPGKLADC       +E
Sbjct: 353 FLEENPNVAKRVCAKVAEATRARIAARKARETVRRKGALDGASLPGKLADCQSRDPRESE 412

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
           LFIVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +K+ ++ +I  ++ ALG    
Sbjct: 413 LFIVEGDSAGGSAKQGRDRRTQAILPLRGKILNVEKARFDKMLSSAEIATMITALGTGIG 472

Query: 526 SQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ 584
            +  +   +RY K++IMTDADVDG+HI +LLLTFF+++M +L+E+ +L++  PPL+R+ +
Sbjct: 473 PEEYDVSKIRYHKIVIMTDADVDGSHIRTLLLTFFFRQMPELVEKGYLYIAQPPLYRVQK 532

Query: 585 GTKSVYAHDEEHKQKILEEFKKHGKG 610
           G K  Y  DE      L +       
Sbjct: 533 GKKESYLKDEAALDDFLLQLGTEKAK 558



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 7/95 (7%)

Query: 594 EEHKQK---ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
           EE        +E  K+       I R+KGLGEM   QL ET MD  +RTLL+V ++  + 
Sbjct: 704 EEEVDDVFGAVEVLKRAATAGQTIQRYKGLGEMNPEQLWETTMDHARRTLLQVRVDDTV- 762

Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              +  +  + LMG   + R +FI++ A  + ++ 
Sbjct: 763 ---EADEVFSVLMGDAVEPRREFIEKHALDVQNLD 794


>gi|160895453|ref|YP_001561035.1| DNA gyrase subunit B [Delftia acidovorans SPH-1]
 gi|160361037|gb|ABX32650.1| DNA gyrase, B subunit [Delftia acidovorans SPH-1]
          Length = 859

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 231/617 (37%), Positives = 334/617 (54%), Gaps = 48/617 (7%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNA 85
            +  +       S S  Y   +I+ILEGLE VR RPGMYIG T D   LHHL  EV+DN+
Sbjct: 5   NKPENQTIAPEGSDSSGYGEGAIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNS 64

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPV-----ENHPKFPNKSTLEIILTTLHAG 140
           +DE +AGY + I V++  +G L+V+DNGRGIP      + H   P +S  EI LT LHAG
Sbjct: 65  IDEALAGYCDDILVTIHADGSLSVIDNGRGIPTRVKMDDKHE--PKRSAAEIALTELHAG 122

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL------- 193
           GKF+ ++Y++SGGLHGVG+S VNALS  L + V R   ++   FSRG   +         
Sbjct: 123 GKFNQNSYKVSGGLHGVGVSCVNALSIWLKLNVRRDGEVYEIDFSRGHVQNRPIEIVDGV 182

Query: 194 ----EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
                +     +KRGT++ F PD +IF     F    L K  +  ++L+  V+     ++
Sbjct: 183 EVSPMRVVGKSDKRGTKVHFLPDTEIFTQNHEFRYEILAKRLRELSFLNNGVRIRLKDER 242

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT-------HRGTV 302
           +  E         F   GG+  ++Q    N+ ++    F     +              V
Sbjct: 243 DGREDD-------FSGAGGVMGFVQFINANKKVLHPTAFHANGTRPAESYGGIPGTEIGV 295

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359
           E A+ W +    ++  + N I   +GGTH +GLR A+TR I KY E  +   K  + +  
Sbjct: 296 EVAMQWNDSYAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIEQNELAKKAKVEVSG 355

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD+      +LSV + EP+F+ QTK KLVS + +  VE+ +      YL + P +A  L 
Sbjct: 356 DDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVAKALTDYLEEKPNDAKILC 415

Query: 420 EWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
             +++ +  R   RK RE+ R+   +  + LPGKLADC +      E++IVEGDSAGGSA
Sbjct: 416 SKIVDAARAREAARKAREMTRRKGVLDGMGLPGKLADCQEKDPALCEIYIVEGDSAGGSA 475

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-----------RSQ 527
           KQ R+R  QA+LPLRGKILNV  A  EK+  + +I+ L+ ALG                 
Sbjct: 476 KQGRDRKFQAILPLRGKILNVEKARYEKLLTSNEIVTLITALGTGIGKATAESGKSGSDD 535

Query: 528 YREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTK 587
           +    LRY ++IIMTDADVDGAHI +LLLTFFY++M DL+E+ H+++  PPL+++  G +
Sbjct: 536 FDPNKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPDLVERGHIYIAQPPLYKVKNGKE 595

Query: 588 SVYAHDEEHKQKILEEF 604
            +Y  D     + L   
Sbjct: 596 ELYIKDGPALNQYLLRI 612



 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 7/107 (6%)

Query: 581 RITQGTKSVYAHDEE--HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           ++T+G     A  ++    ++ ++      +      R+KGLGEM   QL ET MD   R
Sbjct: 757 KVTRGEGEK-AKSDKAGDFRQAMQWLLHEAERTTARQRYKGLGEMNPEQLWETTMDPTVR 815

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +LL+V+I   +    +       LMG + + R +FI+  A    ++ 
Sbjct: 816 SLLQVQIGDAI----EADRVFTMLMGDEVEPRREFIETNALRAGNID 858


>gi|58585021|ref|YP_198594.1| DNA gyrase, topoisomerase II, B subunit, GyrB [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
 gi|58419337|gb|AAW71352.1| DNA gyrase, topoisomerase II, B subunit, GyrB [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
          Length = 792

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 227/569 (39%), Positives = 339/569 (59%), Gaps = 13/569 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
             NY+A +I+IL GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY + IEV
Sbjct: 2   ESNYNADAIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDESLAGYCDKIEV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           S++ +G ++V DNGRGIP + H K    S  E+I+T LHAGGKFD++TY++SGGLHGVGI
Sbjct: 62  SINEDGSVSVTDNGRGIPTDIH-KEEGISAAEVIMTQLHAGGKFDSNTYKVSGGLHGVGI 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS  L +T+ R       +F  G  + PL+   K  NKRGTR+TF P  + F   
Sbjct: 121 SVVNALSSWLELTIWRNKKEHFMRFEDGESIEPLKIVNKNTNKRGTRVTFMPSTETFSSI 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
             F  + L    +  A+L+  +       + +   +    + ++     G   +++   +
Sbjct: 181 -DFSYSTLENRIRELAFLNSSINITLRDLRNKPYIESHFNDSKQSKDNFGTANFVRYLDK 239

Query: 279 NRSLISSEIFTGKTEKK--GTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRV 336
           N++ ++         K    +   ++EW  ++      +  + N I   +GGTH +G R 
Sbjct: 240 NKTHVTKITSMKGDAKDLGISIEISMEWNDSY---YEHMLCFTNNIRQRDGGTHLAGFRS 296

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA       K  +S+  +D+      +LS+ + +P+F+ QTK KLVS +A+ 
Sbjct: 297 ALTRCINNYATDEGFLKKAKVSLTGEDVREGLTCVLSLKMPDPKFSSQTKDKLVSSEART 356

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            VE+ + D     L  +P  A  ++E VI  ++ R   RK RE V  K +I    LPGKL
Sbjct: 357 VVESIVFDKLSTILETDPKLAASIVERVIRSAKGREAARKARELVKNKNSIDISTLPGKL 416

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC + +   +ELFIVEG+SAGG+AKQ RNR  QAVL LRGKILNV     ++I ++ +I
Sbjct: 417 ADCQEKVPELSELFIVEGNSAGGTAKQGRNRKTQAVLALRGKILNVERVSLDRIFSSAEI 476

Query: 514 MDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ A+G    S++ + E  RY K+IIMTDADVDG+HI +L+LTFF++ M ++IE+ +L
Sbjct: 477 GSLITAIGAGIGSEHFDIEKTRYHKIIIMTDADVDGSHIRTLILTFFFRYMREVIERGYL 536

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++  PPL+++T+  +  Y  D+E  +K +
Sbjct: 537 YIAQPPLYKVTKNAEDTYIKDDETFEKYI 565



 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 4/78 (5%)

Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667
           GK  + + RFKGLGEM A QL +T ++   RTLL+VEI       ++     + LMG   
Sbjct: 718 GKKGLTLQRFKGLGEMNADQLWDTTLNPETRTLLKVEI----KDCEEADSIFSVLMGDIV 773

Query: 668 DERFKFIQERASFIDDVG 685
           + R  FI   A  + DV 
Sbjct: 774 EPRRNFINNNALNVYDVD 791


>gi|330822656|ref|YP_004385959.1| DNA gyrase subunit B [Alicycliphilus denitrificans K601]
 gi|329308028|gb|AEB82443.1| DNA gyrase, B subunit [Alicycliphilus denitrificans K601]
          Length = 860

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 229/618 (37%), Positives = 338/618 (54%), Gaps = 48/618 (7%)

Query: 23  LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEV 81
             ++   P + A A+  A   Y   +I+ILEGLE VR RPGMYIG T D   LHHL  EV
Sbjct: 2   TDENQPDPQTTAPASVDA-GGYGEGAIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEV 60

Query: 82  IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLH 138
           +DN++DE +AG+ + I V++  +  ++V+DNGRGIP          P +S  EI LT LH
Sbjct: 61  VDNSIDEALAGHCDDIVVTIHTDNSISVIDNGRGIPTGVKMDDKHEPKRSAAEIALTELH 120

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP--------- 189
           AGGKF+ ++Y++SGGLHGVG+S VNALS +L +TV R       +FS+G+          
Sbjct: 121 AGGKFNQNSYKVSGGLHGVGVSCVNALSKKLRLTVRRDGKTHQLEFSKGVVQNRLIEVVD 180

Query: 190 ---LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
              +SP++        RGT + F PD +IF + + F    L K  +  ++L+  V+    
Sbjct: 181 GFEVSPMKIVGPTEK-RGTEVRFLPDTEIFKENSDFHYEILAKRLRELSFLNNGVRIRLI 239

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT-------HR 299
            ++   E         F   GG+K +++     + ++    F     +            
Sbjct: 240 DERTGKEDD-------FSGAGGVKGFVEFINGTKKVLHPTAFHATGSRPAESYGGIPGTE 292

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
             VE A+ W +    ++  + N I   +GGTH +GLR A+TR I KY E  +   K  + 
Sbjct: 293 IGVEVAMQWNDGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIEQNELAKKAKVD 352

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           +  DD+      +LSV + EP+F+ QTK KLVS + +  VE+ +      YL + P +A 
Sbjct: 353 VSGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVAKALTEYLEEKPQDAK 412

Query: 417 KLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            L   ++E +  R   RK RE+ R+   +  + LPGKLADC +      E++IVEGDSAG
Sbjct: 413 ILCGKIVEAARAREAARKAREMTRRKGVLDGMGLPGKLADCQEKDPALCEIYIVEGDSAG 472

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT----------- 524
           GSAKQ R+R  QA+LPLRGKILNV  A  EK+ ++ +I+ L+ ALG              
Sbjct: 473 GSAKQGRDRKFQAILPLRGKILNVEKARYEKLLSSNEIITLITALGTGIGKASEDGNGKS 532

Query: 525 -RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT 583
               +    LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ H+++  PPL+++ 
Sbjct: 533 GADDFDAAKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVK 592

Query: 584 QGTKSVYAHDEEHKQKIL 601
            G + +Y  D       L
Sbjct: 593 NGKEELYLKDAAALDNFL 610



 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 18/126 (14%)

Query: 563 MYDLIEQKHLFLISPPLFRITQG---TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
              LI++           ++ +G    +      +   ++ ++      +      R+KG
Sbjct: 749 FRGLIQEG---------AKVMRGEGEKQKEEKISD--FRQAMQWLIGEAERTTARQRYKG 797

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679
           LGEM   QL ET MD   R LLRV+I+  +    +       LMG + + R  FI+  A 
Sbjct: 798 LGEMNPEQLWETTMDPEVRRLLRVQIDDAI----EADRVFTMLMGDEVEPRRDFIETNAL 853

Query: 680 FIDDVG 685
              ++ 
Sbjct: 854 RAGNID 859


>gi|224367126|ref|YP_002601289.1| GyrB [Desulfobacterium autotrophicum HRM2]
 gi|223689842|gb|ACN13125.1| GyrB [Desulfobacterium autotrophicum HRM2]
          Length = 808

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 227/575 (39%), Positives = 339/575 (58%), Gaps = 20/575 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
             N     +Y A++I+ILEGLE VR RP MYIG    + LHHL  EV+DN++DE +AG+ 
Sbjct: 1   MKNNDNVKDYGANNIKILEGLEAVRKRPSMYIGNVGIEGLHHLVYEVVDNSIDEAMAGHC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I V +  +  ++V DNGRGIPV  H +  +    E+++T LHAGGKFD  +Y++SGGL
Sbjct: 61  DKIIVIIHPDQSVSVEDNGRGIPVGMH-ETEHIPAAEVVMTKLHAGGKFDKDSYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVGISVVNALS  L + V +   ++ Q++SRG+  + LE      +K GTRI F+PD  
Sbjct: 120 HGVGISVVNALSINLEMEVFKDGKVYFQRYSRGVKQTELEITGDT-DKSGTRILFKPDFD 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           I  +   F+  +L +  +  A+L+  ++     +          EK++F++ GGL ++++
Sbjct: 179 IMNE-NEFEYEKLSRRMRELAFLNKGIRIIIEDE-------LSAEKDDFHYEGGLLSFVE 230

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               N + +       + EK      +V+ AI + +    +I S+ N I T EGGTH SG
Sbjct: 231 YLNRNFTAMHEP-IHIEGEKSDV---SVDVAIQYNDTFKEKIYSFANNINTIEGGTHLSG 286

Query: 334 LRVALTRGIKKYAELTQNKR---AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
            + ALTR +  YA      +    I I  DD+      I+SV + +P+F GQTKTKL + 
Sbjct: 287 FKGALTRTLNNYASSGNLPKNMQNIKIGGDDVREGLTAIVSVKVMDPQFEGQTKTKLGNS 346

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRL 449
           + +  VE+ + +    +L +NP  A K++   ++ +  R   ++ RE+ RK   +    L
Sbjct: 347 EVKGIVESLINERLAMFLEENPNTAKKIIMKAVDAARARDAAKRARELARKKGTLLDSTL 406

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLA+C        ELF+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +KI  
Sbjct: 407 PGKLAECQYADPKERELFLVEGDSAGGSAKQGRDRRFQAILPLKGKILNVEKARFDKILR 466

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           + +I ++   LG    + +Y  E +RY K++IMTDADVDG+HI +LLLTFF+++M DLI 
Sbjct: 467 SDEIKNVFTVLGTGAGKEEYDIEKIRYHKIVIMTDADVDGSHIRTLLLTFFFRQMPDLIS 526

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEE 603
             +L++  PPLFRI +G   +Y  DE   +  L +
Sbjct: 527 NGYLYIAQPPLFRIGKGKSGIYLKDEPEYRDYLLK 561



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 4/91 (4%)

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
           E + +         K  I I R+KGLGEM   QL ET MD  KR +L+V I       + 
Sbjct: 721 EDRTEFFNYIMAEAKKGIAIQRYKGLGEMNPDQLWETTMDPEKRVMLQVNIED----AEK 776

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
             +    LMG + + R  FIQ  A  +  + 
Sbjct: 777 ADEIFTLLMGEEVEPRRNFIQTNALEVSSLD 807


>gi|264676139|ref|YP_003276045.1| DNA gyrase B subunit [Comamonas testosteroni CNB-2]
 gi|262206651|gb|ACY30749.1| DNA gyrase, B subunit [Comamonas testosteroni CNB-2]
          Length = 855

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 233/618 (37%), Positives = 338/618 (54%), Gaps = 44/618 (7%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNA 85
               + P     + +  Y   +I+ILEGLE VR RPGMYIG T D   LHHL  EV+DN+
Sbjct: 1   MTEENKPDTQTAADAGGYGEGAIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNS 60

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGK 142
           +DE +AGY + I V++  +G L+V+DNGRGIP          P +S  EI LT LHAGGK
Sbjct: 61  IDEALAGYCDDILVTIHADGSLSVIDNGRGIPTGVKMDDKHEPKRSAAEIALTELHAGGK 120

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP---------- 192
           F+ ++Y++SGGLHGVG+S VNALS  L +TV+R        FSRG   +           
Sbjct: 121 FNQNSYKVSGGLHGVGVSCVNALSVWLKLTVSRDGRRHEIDFSRGFVQNRLIEVVDGAEV 180

Query: 193 -LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
              +     +KRGT++ F PD +IF +   F    L K  +  ++L+  V+     +++ 
Sbjct: 181 SPMRVVGASDKRGTKVHFLPDQEIFKENFEFRYEILAKRLRELSFLNNGVRIRLKDERDG 240

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH-------RGTVEW 304
            E         F   GG+K ++Q     + ++    F     +              VE 
Sbjct: 241 KEDD-------FSGAGGVKGFVQFINGTKKVLHPTTFHANGSRPAETYGGIPGTEIGVEV 293

Query: 305 AIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDD 361
           ++ W +    ++  + N I   +GGTH +GLR A+TR I KY    +   K  + +  DD
Sbjct: 294 SMQWNDSYAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIADNEMAKKAKVEVSGDD 353

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
           +      +LSV + EP+F+ QTK KLVS + +  VE+ +      +L +NP +A  L   
Sbjct: 354 MREGLCAVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVAKSLTDFLEENPNDAKILCGK 413

Query: 422 VIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
           +IE +  R   RK RE+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ
Sbjct: 414 IIEAARAREAARKAREMTRRKGVLDGMGLPGKLADCQEKDPALCEIYIVEGDSAGGSAKQ 473

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-----------RSQYR 529
            R+R  QA+LPLRGKILNV  A  EK+ ++Q+I+ L+ ALG                 Y 
Sbjct: 474 GRDRKFQAILPLRGKILNVEKARYEKLLSSQEIITLITALGTGIGKVSEDSGKSSSDDYN 533

Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV 589
            + LRY ++IIMTDADVDGAHI +LLLTFFY++M DL+E+ H+++  PPL+++  G + +
Sbjct: 534 PDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPDLVERGHIYIAQPPLYKVKNGKEEL 593

Query: 590 YAHDEEHKQKILEEFKKH 607
           Y  D     K L +   +
Sbjct: 594 YLKDGPALNKYLLKIALN 611



 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 7/107 (6%)

Query: 581 RITQGTKSVYAHDEE--HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           ++T+G     A  E+    ++ +       +      R+KGLGEM   QL ET MD N R
Sbjct: 753 KVTRGEGEK-AKTEKVGDFRQAMAWLISEAERTTGRQRYKGLGEMNPEQLWETTMDPNVR 811

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +LL+V+I   +    +       LMG + + R  FI++ A    ++ 
Sbjct: 812 SLLQVKIGDAI----EADRVFTMLMGDEVEPRRNFIEDNALRAGNID 854


>gi|33591698|ref|NP_879342.1| DNA gyrase subunit B [Bordetella pertussis Tohama I]
 gi|33571341|emb|CAE44818.1| DNA gyrase subunit B [Bordetella pertussis Tohama I]
          Length = 817

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 223/577 (38%), Positives = 340/577 (58%), Gaps = 17/577 (2%)

Query: 36  ANQSASDN-YDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGY 93
            N +  +  Y A SI++L+GLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+
Sbjct: 5   QNTTPENTGYGADSIKMLKGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEALAGH 64

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFP-NKSTLEIILTTLHAGGKFDNSTYEISG 152
            + I V++  +  ++V DNGRGIP + H      +S  EI++T LHAGGKFD ++Y++SG
Sbjct: 65  CDDIVVTIHTDNSISVTDNGRGIPTDIHKDDEFGRSAAEIVMTELHAGGKFDQNSYKVSG 124

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+S VNALS+ L +T+ R   +   +F +G  ++PL       +KRGT + F  D
Sbjct: 125 GLHGVGVSCVNALSEWLRLTIRRNGQVHQMEFRQGQRVAPLTATGPT-DKRGTEVRFLAD 183

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P IF +   +    L K  +  ++L+  VK      ++  E       E F F GG+K +
Sbjct: 184 PAIFTNI-EYHYEILSKRLRELSFLNNGVKVRLVDQRQGKE-------ENFAFSGGVKGF 235

Query: 273 LQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++    ++S++   +F    E   G     VE A+ W +     +  + N I   +GGTH
Sbjct: 236 VEYINRSKSVLHLNVFAVSAESSAGGVLVGVEVAMQWNDSYSESVLCFTNNIPQRDGGTH 295

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +GLR A+TR + KY    +   K  +    DD+      +LSV + EP+F+ QTK KLV
Sbjct: 296 LTGLRAAMTRVLNKYIADNELAKKAKVETTGDDMREGLACVLSVKVPEPKFSSQTKDKLV 355

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKL 447
           S + +  VE+A+    + +L+++P +A  L   ++E +  R   RK RE+ R+ + +   
Sbjct: 356 SSEVRPAVEDAVARTLETWLLEHPNDAKALCGKIVEAARAREAARKAREMTRRKSVLEGA 415

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +      EL+IVEGDSAGGSAKQ R+R  QA+LPLRGK+LNV  A  +++
Sbjct: 416 GLPGKLADCQEKDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARFDRL 475

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             ++QI  L+ ALG      +  + LRY ++IIMTDADVDGAHI +LLLT  Y++M +L+
Sbjct: 476 IASEQIATLITALGTSIGPDFNIDKLRYHRLIIMTDADVDGAHIRTLLLTLLYRQMPELV 535

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
            + H+++  PPL+++  G    Y  D++ + + + + 
Sbjct: 536 ARGHVYIAQPPLYKVKVGRDERYLKDDQEEAQFMLQL 572



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 7/102 (6%)

Query: 585 GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644
             K  +  D    ++ ++  +   +  +   R+KGLGEM   QL ET MD   R LLRV+
Sbjct: 723 KRKEQFVSD---FREAMQWLRGEAERGLSKQRYKGLGEMNPEQLWETTMDPKVRRLLRVQ 779

Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           I   +       +    LMG   + R  FI+  A    ++  
Sbjct: 780 IEDAI----AADEVFTTLMGDDVEPRRAFIETHALSAGNIDA 817


>gi|317401670|gb|EFV82295.1| DNA gyrase subunit B [Achromobacter xylosoxidans C54]
          Length = 815

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 222/580 (38%), Positives = 340/580 (58%), Gaps = 16/580 (2%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVI 90
           S        +  Y A SI++L+GLE VR RPGMYIG T D   LHH+  EV+DNA+DE +
Sbjct: 2   SDQQNTTPENGGYGADSIKMLKGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEAL 61

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFP-NKSTLEIILTTLHAGGKFDNSTYE 149
           AGY + I V++  +  ++V DNGRGIP + H     ++S  EI++T LHAGGKFD ++Y+
Sbjct: 62  AGYCDDIVVTIHTDNSISVTDNGRGIPTDIHKDDEFHRSAAEIVMTELHAGGKFDQNSYK 121

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+S VNALS+ L +T+ R   +   +F +G  ++PL       +KRGT + F
Sbjct: 122 VSGGLHGVGVSCVNALSEWLRLTIRRNGEVHQMEFRQGERVAPLAVTG-TTDKRGTEVRF 180

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
             DP I      +    L K  +  ++L+  VK      ++  E       E F F GG+
Sbjct: 181 LADP-IIFTNVEYHYEILSKRLRELSFLNNGVKIRLIDQRQGKE-------ENFAFSGGV 232

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           K +++     ++++   +F+  TE   G     VE A+ W +     +  + N I   +G
Sbjct: 233 KGFVEYINRAKTVLHPNVFSVTTESTAGGVPVGVEVAMQWNDSYSESVLCFTNNIPQRDG 292

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           G+H +GLR A+TR I KY    +   K  +    DD+      +LSV + EP+F+ QTK 
Sbjct: 293 GSHLTGLRAAMTRIINKYITDNELAKKAKVETSGDDMREGLACVLSVKVPEPKFSSQTKD 352

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-I 444
           KLVS + +  VE A+    + +L+++P +A  L   ++E +  R   RK RE+ R+ + +
Sbjct: 353 KLVSSEVRPAVEEAVARTLETWLLEHPNDAKALCGKIVEAARAREAARKAREMTRRKSVL 412

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC +      EL+IVEGDSAGGSAKQ R+R  QA+LPLRGK+LNV  A  
Sbjct: 413 EGAGLPGKLADCQEKDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARF 472

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           +++  ++QI  L+ ALG      +  + LRY ++IIMTDADVDGAHI +LLLT  Y++M 
Sbjct: 473 DRLIASEQIATLITALGTSIGPDFNVDKLRYHRLIIMTDADVDGAHIRTLLLTLLYRQMP 532

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           +L+++ ++++  PPL+++  G +  Y  D++ + + + + 
Sbjct: 533 ELVQRGYVYIAQPPLYKVKVGREERYLKDDQEEAQFMLQL 572



 Score =  133 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 4/93 (4%)

Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652
                ++ ++  +      I   R+KGLGEM   QL ET MD   R LLRV+I   +   
Sbjct: 726 TVSDFREAMQWLRSEADRGISKQRYKGLGEMNPDQLWETTMDPKVRRLLRVQIEDAI--- 782

Query: 653 KDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
               +    LMG   + R  FI+  A    ++ 
Sbjct: 783 -AADEVFTTLMGDDVEPRRNFIEAHALSAGNID 814


>gi|224437090|ref|ZP_03658071.1| DNA gyrase subunit B [Helicobacter cinaedi CCUG 18818]
 gi|313143561|ref|ZP_07805754.1| DNA gyrase [Helicobacter cinaedi CCUG 18818]
 gi|313128592|gb|EFR46209.1| DNA gyrase [Helicobacter cinaedi CCUG 18818]
          Length = 772

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 228/566 (40%), Positives = 339/566 (59%), Gaps = 19/566 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y AS+I++L+GLE VR RPGMYIG T+   LHH+  EV+DN++DE +AG+ + I ++L
Sbjct: 4   KEYQASNIKVLKGLEAVRKRPGMYIGDTNSGGLHHMIYEVVDNSVDEAMAGHCDRINITL 63

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   + DNGRGIPV+ HP   N     ++LTTLHAGGKFD  TY++SGGLHGVG+SV
Sbjct: 64  TMEGSAIIEDNGRGIPVDIHP-TENLPAATLVLTTLHAGGKFDQDTYKVSGGLHGVGVSV 122

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS +L +T+ +   I+ Q+F++GIP S LE   + +   GT I F PD ++      
Sbjct: 123 VNALSKKLIMTIKKNGHIYRQEFAQGIPQSELEIIGETKEH-GTIIEFYPDDEVMEVL-E 180

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD+  L +  +  AYL+  +   +  ++         ++E ++F GGLK ++Q  +  + 
Sbjct: 181 FDSQILTRRFKEMAYLNHNITIYFKDER-------TGQEESYHFDGGLKQFIQD-VNTKP 232

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
           L+S  I     E++      VE A+A+ E    ++ S+ N I T +GGTHE+G R  L+R
Sbjct: 233 LVSLIISFEALEQET----EVEIALAYNEGYDEKVLSFVNNIRTPDGGTHEAGFRAGLSR 288

Query: 341 GIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  Y E   N  ++   +  DD+    V I+S  + +P+F GQTK KL S   +  V+ 
Sbjct: 289 AIMNYIEANANAREKDSKVTGDDVREGLVAIISTKVIDPQFEGQTKGKLGSAFVKPIVQK 348

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT-AIRKLRLPGKLADCS 457
              +    +  +NP EA  +++  I  +  R   +K R++  K  +     LPGKLADC 
Sbjct: 349 LTYEKLAKFFEENPTEARIIMQKAIMAARGREAAKKARDLTHKKESFSVGTLPGKLADCQ 408

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +E+++VEGDSAGGSAKQ R+R+ QA+LPLRGKILNV  +  +KI  + +I +++
Sbjct: 409 SKDPSESEIYLVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKSRLDKILKSDEIKNMI 468

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            A GC    ++  E LRY K+IIMTDADVDG+HI +LL+TFFY+ +  L+E  H+++  P
Sbjct: 469 TAFGCGIGDEFNIEKLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLKPLVENGHIYIAQP 528

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEE 603
           PL+R  +G   +Y  DE    + L E
Sbjct: 529 PLYRYKKGKTEIYLKDERALSEYLVE 554



 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 4/91 (4%)

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
           E     LE+ ++  K    I R+KGLGEM   QL ET M    RTLLRV+I+ D     D
Sbjct: 685 EDLIAFLEKIEESAKKDAYIQRYKGLGEMNPDQLWETTMTPANRTLLRVKIDND----AD 740

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
           T +     MG + + R  +IQE A  +  + 
Sbjct: 741 TDEIFTLFMGDEVEPRRAYIQEHAKDVKHLD 771


>gi|224418813|ref|ZP_03656819.1| DNA gyrase subunit B [Helicobacter canadensis MIT 98-5491]
 gi|253826663|ref|ZP_04869548.1| DNA gyrase, B subunit [Helicobacter canadensis MIT 98-5491]
 gi|313142332|ref|ZP_07804525.1| DNA gyrase subunit b [Helicobacter canadensis MIT 98-5491]
 gi|253510069|gb|EES88728.1| DNA gyrase, B subunit [Helicobacter canadensis MIT 98-5491]
 gi|313131363|gb|EFR48980.1| DNA gyrase subunit b [Helicobacter canadensis MIT 98-5491]
          Length = 772

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 236/594 (39%), Positives = 338/594 (56%), Gaps = 26/594 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y  SSI++L+GLE VR RPGMYIG T+   LHHL  EV+DN++DE +AGY N I ++L
Sbjct: 4   KQYSGSSIKVLKGLEAVRKRPGMYIGDTNTNGLHHLIYEVVDNSIDEAMAGYCNEISITL 63

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   + DNGRGIPV+ HP   N     ++LT LHAGGKFD  +Y++SGGLHGVGISV
Sbjct: 64  TQQGSAIIKDNGRGIPVDIHP-TENIPAATVVLTVLHAGGKFDQDSYKVSGGLHGVGISV 122

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  L +T+ +   I+ Q F++GIP   L    + ++  GT I F PD  IF     
Sbjct: 123 VNALSKSLQMTIHKNGKIYRQNFAQGIPQDELNIIGECKD-NGTIIEFIPDDSIFE-ITE 180

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F    L K  +  AYL+ +V   +  +++          E ++F GGL  ++    + + 
Sbjct: 181 FQREILSKRFKELAYLNKQVTIHFKDERD-------GFNEIYHFEGGLNQFVNDLNK-KP 232

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
           LIS+ I    TE     +  + +   + E+   + S+ N I T +GGTHESG R+ LTR 
Sbjct: 233 LISTIINFEGTENDVEIQIALAYNEGFEEK---VLSFVNNIRTIDGGTHESGFRMGLTRV 289

Query: 342 IKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  Y E   N  ++   I  +D+    V I+SV + +P+F GQTK KL S   +  V+  
Sbjct: 290 ITNYIEANANAREKDSKITGEDIREGLVAIVSVKVIDPQFEGQTKGKLGSAFVRPIVQKL 349

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
             +    +  +NP EA  +++  +  +  R   +K RE   +K       LPGKLADC  
Sbjct: 350 TYEKLAKFFEENPNEAKAIMQKALLAARGREAAKKARELTRKKETFSVGTLPGKLADCQS 409

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  +  +KI  +++I +L+ 
Sbjct: 410 KDPSISEIYLVEGDSAGGSAKQGRDRVYQAILPLRGKILNVEKSRLDKILKSEEIKNLIT 469

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALGC     +    +RY K+IIMTDADVDG+HI +LL+TFF++ +  +IE  +L++  PP
Sbjct: 470 ALGCGIGEDFDITKIRYNKIIIMTDADVDGSHIQTLLMTFFFRYLRGIIESGYLYIAQPP 529

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           L+R  +G K +Y  DE+   + L E   +G    E     G+G      L E  
Sbjct: 530 LYRFKKGKKEIYLKDEKALSEYLIE---NGIENFEFQ---GIGT---KDLMEFF 574



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           ++LE+ ++  K   +I R+KGLGEM   QL ET M    R L+RVEI      +++  + 
Sbjct: 689 EMLEKIEESSKKGADIQRYKGLGEMNPEQLWETTMTPENRRLIRVEI----KDIEEASEV 744

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            +  MG + + R ++IQ  A  +  + 
Sbjct: 745 FSLFMGDEVEPRREYIQAHAKDVKHLD 771


>gi|74316021|ref|YP_313761.1| DNA gyrase subunit B [Thiobacillus denitrificans ATCC 25259]
 gi|74055516|gb|AAZ95956.1| DNA gyrase, B subunit [Thiobacillus denitrificans ATCC 25259]
          Length = 823

 Score =  478 bits (1231), Expect = e-133,   Method: Composition-based stats.
 Identities = 230/594 (38%), Positives = 342/594 (57%), Gaps = 34/594 (5%)

Query: 30  PDSPAFANQSASDN-YDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMD 87
            + P +A  + S+  YD  SI+ LEGLE VR RPGMYIG T D   LHH+  EV+DNA+D
Sbjct: 2   SNKPEYAMPADSNGGYDEDSIQQLEGLEAVRKRPGMYIGDTSDGTGLHHMVFEVLDNAID 61

Query: 88  EVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFD 144
           E +AG+ + I+V +  +  +++ DNGRGIPV         P +S  EI++T LHAGGKF+
Sbjct: 62  EALAGWCDDIKVIIHPDNSISISDNGRGIPVGVKFDDKHEPKRSAAEIVMTVLHAGGKFN 121

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL------------SP 192
            ++Y++SGGLHGVG+S VN LS  L + V R    ++  F++G  +            SP
Sbjct: 122 QNSYKVSGGLHGVGVSCVNGLSKWLKLVVRRDGKKYALTFNQGKVVDRAVEIQNGVEVSP 181

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
           +         RGT + F  D +IFG    F    L K  +  ++L+  VK      ++  
Sbjct: 182 MPVVGDTEG-RGTEVHFLADEEIFGKV-EFHFDILAKRIRELSFLNNGVKIELLDHRD-- 237

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
                 + E F   GG+K +++     +S++  +IF    EK G    TVE A+ W +  
Sbjct: 238 -----GKSENFAHSGGVKGFVEYMNRVKSVLHPKIFHAVGEKDG---MTVEVAMQWNDSY 289

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369
              +  + N I   +GGTH +G+R+A+TR + KY E  +   K  +    DD+      +
Sbjct: 290 SETVQCFTNNIPQRDGGTHLTGMRMAMTRVLNKYIEENEVAKKAKVETTGDDMREGLTCV 349

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           LSV + EP+F+ QTK KLVS + Q  V+  +      +L++NP +A  L   +++ +  R
Sbjct: 350 LSVKVPEPKFSSQTKDKLVSSEVQPVVQEVVGQKLAEFLLENPNDAKLLCAKIVDAARAR 409

Query: 430 LRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
              RK RE+ R+   +  L LPGKLADC +     +E+++VEGDSAGGSAKQ R+R  QA
Sbjct: 410 EAARKAREITRRKGVMDGLGLPGKLADCQEKDPALSEIYLVEGDSAGGSAKQGRDRKFQA 469

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVD 547
           +LPL+GKILNV  A  +K+  +Q+I  L+ ALG    +  Y  + LRY ++IIMTDADVD
Sbjct: 470 ILPLKGKILNVERARFDKVIGSQEIATLITALGTSIGKDDYNPDKLRYHRIIIMTDADVD 529

Query: 548 GAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           GAHI +LLLTFFY++M +L+E+ H+++  PPL+++  G    Y  DE   ++ L
Sbjct: 530 GAHIRTLLLTFFYRQMPELVERGHVYIAQPPLYKVKHGRSERYIKDEHALKEHL 583



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 8/122 (6%)

Query: 565 DLIEQK-HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
            L++    L  +  P  R  +G K          ++ ++ +    K  + I R+KGLGEM
Sbjct: 708 QLVKVGDMLRDLMGPGARARRGEKEAPVQS---FREAMDWYLAEVKRGMSIQRYKGLGEM 764

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
              QL ET MD   R L++V+I   ++S          LMG + + R  FI+  A  + +
Sbjct: 765 NPEQLWETTMDPKVRRLMKVQIEDAISS----DQIFTTLMGDEVEPRRNFIETNALGVRN 820

Query: 684 VG 685
           + 
Sbjct: 821 LD 822


>gi|319760741|ref|YP_004124678.1| DNA gyrase, b subunit [Alicycliphilus denitrificans BC]
 gi|317115302|gb|ADU97790.1| DNA gyrase, B subunit [Alicycliphilus denitrificans BC]
          Length = 860

 Score =  478 bits (1231), Expect = e-133,   Method: Composition-based stats.
 Identities = 229/618 (37%), Positives = 338/618 (54%), Gaps = 48/618 (7%)

Query: 23  LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEV 81
             ++   P + A A+  A   Y   +I+ILEGLE VR RPGMYIG T D   LHHL  EV
Sbjct: 2   TDENQPDPQTTAPASVDA-GGYGEGAIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEV 60

Query: 82  IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLH 138
           +DN++DE +AG+ + I V++  +  ++V+DNGRGIP          P +S  EI LT LH
Sbjct: 61  VDNSIDEALAGHCDDIVVTIHTDNSISVIDNGRGIPTGVKMDDKHEPKRSAAEIALTELH 120

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP--------- 189
           AGGKF+ ++Y++SGGLHGVG+S VNALS +L +TV R       +FS+G+          
Sbjct: 121 AGGKFNQNSYKVSGGLHGVGVSCVNALSKKLRLTVRRDGKTHQLEFSKGVVQNRLIEVVD 180

Query: 190 ---LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
              +SP++        RGT + F PD +IF + + F    L K  +  ++L+  V+    
Sbjct: 181 GFEVSPMKIVGPTEK-RGTEVRFLPDTEIFKENSDFHYEILAKRLRELSFLNNGVRIRLI 239

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT-------HR 299
            ++   E         F   GG+K +++     + ++    F     +            
Sbjct: 240 DERTGKEDD-------FSGAGGVKGFVEFINGTKKVLHPTAFHATGARPAESYGGIPGTE 292

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
             VE A+ W +    ++  + N I   +GGTH +GLR A+TR I KY E  +   K  + 
Sbjct: 293 IGVEVAMQWNDGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIEQNELAKKAKVD 352

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           +  DD+      +LSV + EP+F+ QTK KLVS + +  VE+ +      YL + P +A 
Sbjct: 353 VSGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVAKALTEYLEEKPQDAK 412

Query: 417 KLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            L   ++E +  R   RK RE+ R+   +  + LPGKLADC +      E++IVEGDSAG
Sbjct: 413 ILCGKIVEAARAREAARKAREMTRRKGVLDGMGLPGKLADCQEKDPALCEIYIVEGDSAG 472

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT----------- 524
           GSAKQ R+R  QA+LPLRGKILNV  A  EK+ ++ +I+ L+ ALG              
Sbjct: 473 GSAKQGRDRKFQAILPLRGKILNVEKARYEKLLSSNEIITLITALGTGIGKASEDGNGKS 532

Query: 525 -RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT 583
               +    LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ H+++  PPL+++ 
Sbjct: 533 GADDFDAAKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVK 592

Query: 584 QGTKSVYAHDEEHKQKIL 601
            G + +Y  D       L
Sbjct: 593 NGKEELYLKDAAALDNFL 610



 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 18/126 (14%)

Query: 563 MYDLIEQKHLFLISPPLFRITQG---TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
              LI++           ++ +G    +      +   ++ ++      +      R+KG
Sbjct: 749 FRGLIQEG---------AKVMRGEGEKQKEEKISD--FRQAMQWLIGEAERTTARQRYKG 797

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679
           LGEM   QL ET MD   R LLRV+I+  +    +       LMG + + R  FI+  A 
Sbjct: 798 LGEMNPEQLWETTMDPEVRRLLRVQIDDAI----EADRVFTMLMGDEVEPRRDFIETNAL 853

Query: 680 FIDDVG 685
              ++ 
Sbjct: 854 RAGNID 859


>gi|299530930|ref|ZP_07044344.1| DNA gyrase, B subunit [Comamonas testosteroni S44]
 gi|298721151|gb|EFI62094.1| DNA gyrase, B subunit [Comamonas testosteroni S44]
          Length = 855

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 233/618 (37%), Positives = 338/618 (54%), Gaps = 44/618 (7%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNA 85
               + P     + +  Y   +I+ILEGLE VR RPGMYIG T D   LHHL  EV+DN+
Sbjct: 1   MTEENKPDTQTAADAGGYGEGAIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNS 60

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGK 142
           +DE +AGY + I V++  +G L+V+DNGRGIP          P +S  EI LT LHAGGK
Sbjct: 61  IDEALAGYCDDILVTIHADGSLSVIDNGRGIPTGVKMDDKHEPKRSAAEIALTELHAGGK 120

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP---------- 192
           F+ ++Y++SGGLHGVG+S VNALS  L +TV+R        FSRG   +           
Sbjct: 121 FNQNSYKVSGGLHGVGVSCVNALSVWLKLTVSRDGRRHEIDFSRGFVQNRLIEVVDGAEV 180

Query: 193 -LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
              +     +KRGT++ F PD +IF +   F    L K  +  ++L+  V+     +++ 
Sbjct: 181 SPMRVVGASDKRGTKVHFLPDQEIFKENFEFRYEILAKRLRELSFLNNGVRIRLKDERDG 240

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH-------RGTVEW 304
            E         F   GG+K ++Q     + ++    F     +              VE 
Sbjct: 241 KEDD-------FSGAGGVKGFVQFINGTKKVLHPTTFHANGSRPAETYGGIPGTEIGVEV 293

Query: 305 AIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDD 361
           ++ W +    ++  + N I   +GGTH +GLR A+TR I KY    +   K  + +  DD
Sbjct: 294 SMQWNDSYAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIADNEMAKKAKVEVSGDD 353

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
           +      +LSV + EP+F+ QTK KLVS + +  VE+ +      +L +NP +A  L   
Sbjct: 354 MREGLCAVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVAKSLTDFLEENPNDAKILCGK 413

Query: 422 VIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
           +IE +  R   RK RE+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ
Sbjct: 414 IIEAARAREAARKAREMTRRKGVLDGMGLPGKLADCQEKDPALCEIYIVEGDSAGGSAKQ 473

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-----------RSQYR 529
            R+R  QA+LPLRGKILNV  A  EK+ ++Q+I+ L+ ALG                 Y 
Sbjct: 474 GRDRKFQAILPLRGKILNVEKARYEKLLSSQEIITLITALGTGIGKVSEDSGKSSSDDYN 533

Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV 589
            + LRY ++IIMTDADVDGAHI +LLLTFFY++M DL+E+ H+++  PPL+++  G + +
Sbjct: 534 PDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPDLVERGHIYIAQPPLYKVKNGKEEL 593

Query: 590 YAHDEEHKQKILEEFKKH 607
           Y  D     K L +   +
Sbjct: 594 YLKDGPALNKYLLKIALN 611



 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 7/107 (6%)

Query: 581 RITQGTKSVYAHDEE--HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           ++T+G     A  E+    ++ +       +      R+KGLGEM   QL ET MD N R
Sbjct: 753 KVTRGEGEK-AKTEKVGDFRQAMAWLISEAERTTGRQRYKGLGEMNPEQLWETTMDPNVR 811

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +LL+V+I   +    +       LMG + + R  FI++ A    ++ 
Sbjct: 812 SLLQVKIGDAI----EADRVFTMLMGDEVEPRRNFIEDNALRAGNID 854


>gi|196232356|ref|ZP_03131210.1| DNA topoisomerase (ATP-hydrolyzing) [Chthoniobacter flavus
           Ellin428]
 gi|196223724|gb|EDY18240.1| DNA topoisomerase (ATP-hydrolyzing) [Chthoniobacter flavus
           Ellin428]
          Length = 853

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 220/622 (35%), Positives = 338/622 (54%), Gaps = 35/622 (5%)

Query: 29  IPDSPAFANQSASD-NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMD 87
              + + +  +A+   Y A  +  L+GLE VR +PGMYIGGTDE+ALHH  SEV+DN++D
Sbjct: 2   ADSAVSNSETAATKTQYTADDLSSLKGLEAVRKKPGMYIGGTDERALHHCVSEVLDNSVD 61

Query: 88  EVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST 147
           E +AGY   I+V++  +G +++ DNGRGIPV+ + K      +E++LT LH+GGK+    
Sbjct: 62  EFLAGYCTHIDVTIHSDGSISIRDNGRGIPVDIN-KEEGIPGVELVLTRLHSGGKYGQGN 120

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN--KRGT 205
           YE SGG HGVG   VNA+S+   V V R   I +  F RG     L    +V+N    GT
Sbjct: 121 YEYSGGTHGVGAKCVNAVSEWFKVEVTRDGKIHAMSFERGTTKQQLHVIAEVKNNRHTGT 180

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            ITF+PDP+IF +   F + R++      AY++  +   +  ++            +   
Sbjct: 181 LITFKPDPEIFHETTEFKSERIITRLNDLAYINAPLSFTFLDER-----TEGARPVQIVH 235

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
           P G++ ++    EN++L+  +    K  +    R  VE+ + + +    ++  Y N +  
Sbjct: 236 PKGVEDFVARLSENKTLVHPKPILVKGTRD---RIIVEFGLHYNDSYNEQLLCYTNAVPN 292

Query: 325 DEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH SG R +LTR I +YA+       +  +I  +D++     ++SV   +P F  Q
Sbjct: 293 PDGGTHSSGFRGSLTRAINQYAKNNSLLKDKDPAITGNDVLEGVAAVVSVKHPDPRFESQ 352

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK KL+S + +  V +   +    +  QNP    K+++  +  +  R   RK RE  RK 
Sbjct: 353 TKVKLISPEVESIVGSISYEGLMLHFDQNPGVGKKIIDKCLMAARAREAARKARETVRKG 412

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADCS+     TEL++VEGDSAGGSAKQ R+R  QA+LP++GKI+NV  A
Sbjct: 413 AMTGGGLPGKLADCSERDPELTELYVVEGDSAGGSAKQGRDRRFQAILPIKGKIINVEKA 472

Query: 503 GSEKIRNNQQIMDLVQALGCRTRS-----------QYREEDLRYEKVIIMTDADVDGAHI 551
             +K+  N +I  L+ A+G                 +  + LRY ++IIMTDADVDG+HI
Sbjct: 473 RLDKVLQNTEIQTLITAIGTGIGMATSEKEKENEGTFDIKRLRYGRIIIMTDADVDGSHI 532

Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK 611
            +LLLTFFY++M +L+   H+++  PPL+ I +  +  Y  D+    +IL          
Sbjct: 533 RTLLLTFFYRQMPELVRGGHVYIACPPLYLIKRKKREEYVEDDAALNRILITLGSEDVKL 592

Query: 612 IEI---SRFKGLGEMLASQLKE 630
             +     F       A+QLKE
Sbjct: 593 KNLADGKIF------TATQLKE 608



 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 10/112 (8%)

Query: 578 PLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           P+F + +G      +            + E    GK  + I RFKGLGEM   QL ET M
Sbjct: 747 PIFELIEGEGDKAITHSLFTVPEIHSKVIEI---GKKGLSIQRFKGLGEMNPKQLYETTM 803

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D NKR + RVE+N+D  +  +       LMG   + R +FI++ A     + 
Sbjct: 804 DPNKRKMWRVELNED--NAVEADRMFTILMGDVVEPRRQFIEDNALNAR-LD 852


>gi|89114222|gb|ABD61706.1| DNA gyrase subunit B [Acholeplasma modicum]
 gi|89114224|gb|ABD61707.1| DNA gyrase subunit B [Acholeplasma modicum]
          Length = 547

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 220/560 (39%), Positives = 320/560 (57%), Gaps = 16/560 (2%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T    LHHL  E++DN++DE + GYA+ I + +     + V DNGRGIPV+ HP    K 
Sbjct: 2   TGSDGLHHLVWEIVDNSIDEALGGYADEITLEILKGEVIRVTDNGRGIPVDIHP-HTQKP 60

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
            +E ILTTLHAGGKFD  +Y++SGGLHGVG SVVNALS+   V V R N  + QK++RG+
Sbjct: 61  AVETILTTLHAGGKFDGESYKVSGGLHGVGASVVNALSEWFTVNVHRNNKNYFQKYARGV 120

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
             + LE++       GT I F+ DP IF +   +D  RL    Q  A+L+  +K      
Sbjct: 121 TQTELEERG-SSEHTGTIIEFKFDPTIFIETQVYDYERLRHRIQQLAFLNRGIKISIKDL 179

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +          +  +++ GGL  Y +    N+  I+ ++F  +          VE  I +
Sbjct: 180 R-----GEETHEATYHYEGGLIEYAEFLNGNKQKINKQLFYVEKLVDDI---NVEITIQY 231

Query: 309 CEENP-EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISA 366
            +     I S+ N I T EGG HE G ++ALTR +  YA++ +  K     I +D     
Sbjct: 232 NDSYNANIYSFANNIPTREGGMHEDGFKMALTRVLNNYAKVNKITKDEEGFIGEDTREGL 291

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
           + I+S+   +P+F GQTKTKL + + ++ V   + +  D +L++NP +A  ++E ++   
Sbjct: 292 ISIISIKHPDPQFEGQTKTKLGNTEVRQIVSQVVGESLDRFLLENPGDAKLIIEKLVLAK 351

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
             R+  RK RE  RKT +  L    KLADC    A   EL+IVEGDSAGGSAKQ R    
Sbjct: 352 RSRIAARKAREATRKTPLDSLGFASKLADCRTKNAEIAELYIVEGDSAGGSAKQGRESEY 411

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADV 546
           QA+LPLRGK+LNV  A  +KI  NQ+I+ L QA+G     +      RY K++IMTDADV
Sbjct: 412 QAILPLRGKVLNVEKARQDKILGNQEILSLFQAIGAGIGDELDVTKARYHKIVIMTDADV 471

Query: 547 DGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKK 606
           DGAHI +LLLTFFY+ +  L+E  +++   PPL++I+ G +  Y + +E    ++E F +
Sbjct: 472 DGAHIRTLLLTFFYRHLRPLVELGYIYFAQPPLYKISSGKRFEYVYTDEELPAVIESFGE 531

Query: 607 HGKGKIEISRFKGLGEMLAS 626
               + ++ R+KGLGEM   
Sbjct: 532 ----RYQMQRYKGLGEMNPE 547


>gi|221069745|ref|ZP_03545850.1| DNA gyrase, B subunit [Comamonas testosteroni KF-1]
 gi|220714768|gb|EED70136.1| DNA gyrase, B subunit [Comamonas testosteroni KF-1]
          Length = 855

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 233/620 (37%), Positives = 342/620 (55%), Gaps = 48/620 (7%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNA 85
               + P   + + +  Y   +I+ILEGLE VR RPGMYIG T D   LHHL  EV+DN+
Sbjct: 1   MTEENKPDTQSAADAGGYGEGAIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNS 60

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPV-----ENHPKFPNKSTLEIILTTLHAG 140
           +DE +AGY + I V++  +G L+V+DNGRGIP      + H   P +S  EI LT LHAG
Sbjct: 61  IDEALAGYCDDILVTIHADGSLSVIDNGRGIPTRVKMDDKHE--PKRSAAEIALTELHAG 118

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK-- 198
           GKF+ ++Y++SGGLHGVG+S VNALS  L +TV+R        FSRG   + L +     
Sbjct: 119 GKFNQNSYKVSGGLHGVGVSCVNALSIWLKLTVSRDGVRHEIDFSRGFVQNRLIEVVDGT 178

Query: 199 ---------VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
                      +KRGT++ F PD +IF +   F    L K  +  ++L+  V+     ++
Sbjct: 179 EVSPMRVLGPSDKRGTKVHFLPDQEIFKENFEFRYEILAKRLRELSFLNNGVRIRLKDER 238

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH-------RGTV 302
           +  E         F   GG+K +++     + ++    F  +  +              V
Sbjct: 239 DGKEDD-------FSGAGGVKGFVEFINGTKKVLHPTTFYAEGTRPAETYGGIPGTEIGV 291

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359
           E A+ W +    ++  + N I   +GGTH +GLR A+TR I KY    +   K  + +  
Sbjct: 292 EVAMQWNDSYAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIADNELAKKAKVEVTG 351

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD+      +LSV + EP+F+ QTK KLVS + +  VE+ +      +L + P +A  L 
Sbjct: 352 DDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVGKLLAEFLEEKPNDAKILC 411

Query: 420 EWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
             ++E +  R   RK RE+ R+   +  + LPGKLADC +      E++IVEGDSAGGSA
Sbjct: 412 NKIVEAARAREAARKAREMTRRKGVLDGMGLPGKLADCQEKDPALCEIYIVEGDSAGGSA 471

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-----------RSQ 527
           KQ R+R  QA+LPLRGKILNV  A  EK+ ++Q+I+ L+ ALG                 
Sbjct: 472 KQGRDRKFQAILPLRGKILNVEKARYEKLLSSQEIITLITALGTGIGKVSEDSGKSSSDD 531

Query: 528 YREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTK 587
           Y  + LRY ++IIMTDADVDGAHI +LLLTFFY++M DL+E+ H+++  PPL+++  G +
Sbjct: 532 YNPDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPDLVERGHIYIAQPPLYKVKNGKE 591

Query: 588 SVYAHDEEHKQKILEEFKKH 607
            +Y  D     K L +   +
Sbjct: 592 ELYLKDGPALNKYLLKIALN 611



 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 7/107 (6%)

Query: 581 RITQGTKSVYAHDEE--HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           ++T+G     A  E+    ++ +       +      R+KGLGEM   QL ET MD N R
Sbjct: 753 KVTRGEGEK-AKTEKVGDFRQAMAWLISEAERTTGRQRYKGLGEMNPEQLWETTMDPNVR 811

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +LL+V+I   +    +       LMG + + R  FI++ A    ++ 
Sbjct: 812 SLLQVKIGDAI----EADRVFTMLMGDEVEPRRNFIEDNALRAGNID 854


>gi|84621661|ref|YP_449033.1| DNA gyrase subunit B [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84365601|dbj|BAE66759.1| DNA gyrase subunit B [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 814

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 228/580 (39%), Positives = 338/580 (58%), Gaps = 18/580 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGY 93
               + +  YD+S I +L GLE VR RPGMYIG   D   LHH+  EV+DN++DE +AG+
Sbjct: 6   NTPPTPNGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDEALAGH 65

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ I   +  +G + V DNGRG+PV+ H K    S  E+ILT LHAGGKFD+++Y++SGG
Sbjct: 66  ADDIVAKILVDGSVAVSDNGRGVPVDIH-KEEGVSAAEVILTVLHAGGKFDDNSYKVSGG 124

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS+ L + + R    + Q+++ G P  PL++ E     RGT + F+P  
Sbjct: 125 LHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQLEASTK-RGTTLRFKPSA 183

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF D   F    L +  +  ++L+  VK     ++          +++F++ GG+++++
Sbjct: 184 AIFSDV-EFHYDILARRLRELSFLNSGVKITLIDERG------EGRRDDFHYEGGIRSFV 236

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   + +S +   + +   E  G     V+ A+ W +     +  + N I   +GGTH +
Sbjct: 237 EHLAQLKSPLHPNVISVTGEHNGI---VVDVALQWTDAYQETMYCFTNNIPQKDGGTHLA 293

Query: 333 GLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR +  Y E     +   +    DD+    + +LSV + +P F+ QTK KLVS 
Sbjct: 294 GFRAALTRVLGTYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSS 353

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRL 449
           D +  VENA       +L +NP EA  +   +++ +  R   RK      RK A+    L
Sbjct: 354 DVRPAVENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGL 413

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +ELFIVEGDSAGGSAKQ RNR NQAVLPLRGKILNV  A  +++  
Sbjct: 414 PGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLA 473

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           + Q+  L+ ALG    R +Y  + LRY ++I+MTDADVDG+HI +LLLTFFY++M +LIE
Sbjct: 474 SDQVGTLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIE 533

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           + ++++  PPL+++ QG   +Y  D+      L      G
Sbjct: 534 RGYIYIGLPPLYKLKQGKSELYLKDDAALNAYLASNAVEG 573



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G KS            L +  K G+   ++ RFKGLGEM A QL ET ++ + R LL
Sbjct: 717 IVRGNKSHSITSFAQAHAWLLDEAKKGR---QVQRFKGLGEMNAEQLWETTVNPDTRRLL 773

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +          + LMG   + R  FI++ A  + ++ 
Sbjct: 774 QVRIEDAV----AADQIFSTLMGDVVEPRRDFIEDNALKVSNLD 813


>gi|188574274|ref|YP_001911203.1| DNA gyrase subunit B [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188518726|gb|ACD56671.1| DNA gyrase, B subunit [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 814

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 228/580 (39%), Positives = 338/580 (58%), Gaps = 18/580 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGY 93
               + +  YD+S I +L GLE VR RPGMYIG   D   LHH+  EV+DN++DE +AG+
Sbjct: 6   NTPPTPNGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDEALAGH 65

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ I   +  +G + V DNGRG+PV+ H K    S  E+ILT LHAGGKFD+++Y++SGG
Sbjct: 66  ADDIVAKILVDGSVAVSDNGRGVPVDIH-KEEGVSAAEVILTVLHAGGKFDDNSYKVSGG 124

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS+ L + + R    + Q+++ G P  PL++ E     RGT + F+P  
Sbjct: 125 LHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQLEASTK-RGTTLRFKPSA 183

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF D   F    L +  +  ++L+  VK     ++          +++F++ GG+++++
Sbjct: 184 AIFSDV-EFHYDILARRLRELSFLNSGVKITLIDERG------EGRRDDFHYEGGIRSFV 236

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   + +S +   + +   E  G     V+ A+ W +     +  + N I   +GGTH +
Sbjct: 237 EHLAQLKSPLHPNVISVTGEHNGI---VVDVALQWTDAYQETMYCFTNNIPQKDGGTHLA 293

Query: 333 GLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR +  Y E     +   +    DD+    + +LSV + +P F+ QTK KLVS 
Sbjct: 294 GFRAALTRVLGTYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSS 353

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRL 449
           D +  VENA       +L +NP EA  +   +++ +  R   RK      RK A+    L
Sbjct: 354 DVRPAVENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGL 413

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +ELFIVEGDSAGGSAKQ RNR NQAVLPLRGKILNV  A  +++  
Sbjct: 414 PGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLA 473

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           + Q+  L+ ALG    R +Y  + LRY ++I+MTDADVDG+HI +LLLTFFY++M +LIE
Sbjct: 474 SDQVGTLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIE 533

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           + ++++  PPL+++ QG   +Y  D+      L      G
Sbjct: 534 RGYIYIGLPPLYKLKQGKSELYLKDDAALNAYLASNAVEG 573



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G KS            L +  K G+   ++ RFKGLGEM A QL ET ++ + R LL
Sbjct: 717 IVRGNKSHPITSFAQAHAWLLDEAKKGR---QVQRFKGLGEMNAEQLWETTVNPDTRRLL 773

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +          + LMG   + R  FI++ A  + ++ 
Sbjct: 774 QVRIEDAV----AADQIFSTLMGDVVEPRRDFIEDNALKVSNLD 813


>gi|224372073|ref|YP_002606445.1| DNA gyrase subunit B [Nautilia profundicola AmH]
 gi|223589802|gb|ACM93538.1| DNA gyrase, B subunit [Nautilia profundicola AmH]
          Length = 758

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 232/592 (39%), Positives = 344/592 (58%), Gaps = 23/592 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y A +IR+L+GLE VR RPGMYIG T  K LHHL  EV+DN++DE +AGYAN I+V +
Sbjct: 2   SDYGAKNIRVLKGLEAVRKRPGMYIGDTSVKGLHHLIYEVVDNSIDEAMAGYANEIKVKI 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G   + DNGRGIPV+ HP+        ++LT LHAGGKFDN TY++SGGLHGVG+SV
Sbjct: 62  NKDGSAEISDNGRGIPVDIHPE-EKIPAATVVLTVLHAGGKFDNKTYKVSGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNAL+ +L +T+ R   I+ Q+F RG P++ LE      N+ GT I F PD +IF     
Sbjct: 121 VNALAKKLIMTIKRDGKIWRQEFERGKPVTDLEVIG-TTNRTGTTIQFWPDEEIFET-TT 178

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F +  L K  +  AYL+  +   +  + +  +       E +++ GG+K +++  L N+ 
Sbjct: 179 FKSEILQKRLKELAYLNPNITIKFENENDGVK-------EVYHYEGGIKDFVK-TLTNKE 230

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            IS  I+             VE A+ +      ++ S+ N I T EGGTHESG +  L++
Sbjct: 231 CISDVIYFTDHYSDEEKALDVEVALCYDSGYDEKVLSFVNNIRTPEGGTHESGFKAGLSK 290

Query: 341 GIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
            +  Y     + K  + I  DD+      I+SV + EP+F GQTK KL S   +   +  
Sbjct: 291 AVINYINKNIKLKENLKITGDDVKEGLNAIVSVKMSEPQFEGQTKGKLGSSYVKPITQKV 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL-PGKLADCSQ 458
             +    +  +NP EA  + E  I  +  R+  ++ R++ RK A   +   PGKLADC  
Sbjct: 351 TYEYLTRFFEENPNEAKLIAEKAIAAARSRIAAKRARDLTRKQAKVGVGTLPGKLADCQS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +EL++VEGDSAGGSAKQ R+R  QA+LPLRGKILN   +   K  ++++I +++ 
Sbjct: 411 KDPVESELYLVEGDSAGGSAKQGRDRVFQAILPLRGKILNTQKSTDAKALSSEEIKNIIT 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG      +  + +RY K+IIMTDADVDG+HI +L++TFF+  + ++IE  +L++  PP
Sbjct: 471 ALGTGIGEDFDIDKIRYNKIIIMTDADVDGSHIQTLIMTFFFNHLREVIENGYLYIAQPP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           L+R  +G    Y  D++   + L E    G   I+I+   G+G     +LKE
Sbjct: 531 LYRYKKGKIEKYLKDDKELNEFLIE---QGINSIDIT---GVG---KPELKE 573



 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 4/92 (4%)

Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
           +    ++L+E  +  +    I R+KGLGEM   QL ET M+   R L++V ++   N+ +
Sbjct: 670 DRDYLELLDEVVEKARKGAHIQRYKGLGEMNPEQLWETTMNPENRVLIQVTMDDAQNAAE 729

Query: 654 DTQDSINKLMGTKADERFKFIQERASFIDDVG 685
                    MG++   R +FIQ  A  ++++ 
Sbjct: 730 K----FELFMGSEVGPRREFIQANAKEVENID 757


>gi|330428634|gb|AEC19968.1| DNA topoisomerase IV subunit B [Pusillimonas sp. T7-7]
          Length = 640

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 237/653 (36%), Positives = 349/653 (53%), Gaps = 38/653 (5%)

Query: 52  LEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVD 111
           ++GLEPV+ RPGMY   T      H+  EVIDNA DE +AG+   I+V+L  +G ++V D
Sbjct: 1   MKGLEPVKQRPGMY---TRTDNPLHIVQEVIDNAADEALAGFGTSIKVTLHTDGSVSVED 57

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST---YEISGGLHGVGISVVNALSDE 168
           +GRGIPV  HP+  +   +E++ T LHAGGKFD  +   Y  SGGLHGVG+SV NALS  
Sbjct: 58  DGRGIPVGLHPE-EHAPVVELVFTRLHAGGKFDKKSAGAYAFSGGLHGVGVSVTNALSTR 116

Query: 169 LHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARL 227
           L V V R        F+ G +  S  E     R K GTR+   PDPK F   A    A L
Sbjct: 117 LEVRVWRGGATHELIFADGAVHTSLQELDPVSRKKTGTRVRVWPDPKYFDS-AALPLAEL 175

Query: 228 LKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEI 287
           +   +SKA L   +K   + +K         E  E+ +  GL+ YL+  L +   I    
Sbjct: 176 IHALRSKAVLLNGIKVTLTIEK-------TGETREWQYQEGLRGYLEEALGDTEKIIPLF 228

Query: 288 FTGKTEKKGTH----RGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRGI 342
              +               +W IAW  + P    SY N I T  GGTHE+GLR  L   +
Sbjct: 229 EGKQYAADDDESYAAGEGAQWVIAWTLDGPVVRESYVNLIATTAGGTHEAGLRDGLFNAV 288

Query: 343 KKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
           K +AE  +   + + ++++D+   A  +LS  + +P+F GQ K KL S DA R V   ++
Sbjct: 289 KSFAELHSLIPKGVKLLAEDVFARASFVLSAKVLDPQFQGQIKEKLNSRDAVRLVGGFVK 348

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIA 461
           +  D +L  N     KL +  I +++   R R  ++V ++ +     LPGKL DC  +  
Sbjct: 349 NALDLWLNANVEYGKKLADAAIRQAQ--ARARSSKKVEKRKSSGVAVLPGKLTDCESDDV 406

Query: 462 HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
             TELF+VEGDSAGGSAK  R++  QA+LPLRGK+LN      +++  N +I D+  A+G
Sbjct: 407 SRTELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNSWEVDRDRLFANNEIHDISVAIG 466

Query: 522 CRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
                     D   LRY ++ I++DADVDG+HI  LLLT F++    LI+  ++++  PP
Sbjct: 467 VDPHGPNDAPDLSGLRYGRICILSDADVDGSHIQVLLLTLFFRHFPKLIDAGNVYIARPP 526

Query: 579 LFRI------TQGTKSVYAHDEEHKQKILEEFKKHG--KGKIEISRFKGLGEMLASQLKE 630
           LFR+       +  + VY  D+     + ++ +K G  +G   ISRFKGLGEM A QL +
Sbjct: 527 LFRVDVPAAGKRPARKVYCLDQGELDVVQDKLRKEGVREGSWSISRFKGLGEMSAEQLWD 586

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQERASFID 682
           T M+ + R L+ V   +   +   T D  + LMG  ++ +R  +++E+ +  +
Sbjct: 587 TTMNPDTRRLMPVACGELGTAG--TTDMFDMLMGKGESAQRRIWLEEKGNLAE 637


>gi|28630989|gb|AAO45882.1| DNA gyrase subunit B [Mesoplasma chauliocola]
          Length = 560

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 219/577 (37%), Positives = 316/577 (54%), Gaps = 24/577 (4%)

Query: 54  GLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNG 113
            LE VR RPGMYIG TD + LHHL  E++DN++DE +AGY   I V+L+ NG +TV DNG
Sbjct: 1   WLEAVRKRPGMYIGSTDVRGLHHLVWEIVDNSIDEALAGYCTEINVTLEKNGSVTVADNG 60

Query: 114 RGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTV 173
           RG+P+  H     + T E+I + LHAGGKF  S Y+ SGGLHGVG SVVNALS + +VT+
Sbjct: 61  RGVPIGMH--STGRPTPEVIFSVLHAGGKFGGSGYKTSGGLHGVGSSVVNALSKKFNVTI 118

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
            R   +   +F+ G  L+    +    NK GT + F PD  IF     F    + +  + 
Sbjct: 119 YRDKKVNEIEFTNGGKLNIPLTEVGTTNKTGTIVNFLPDDSIFNT-TKFSFTTITERLKE 177

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            A L+  ++   +            +  E+ F  GL  +++      + I+  +      
Sbjct: 178 SALLNSGLRITITDK-------INDKFVEYQFENGLVEFVKELSSEFTQITEPVVITGES 230

Query: 294 KKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
           K+      +++     + N  I  + N + T +GGTH +G +  L R I  YA+  +   
Sbjct: 231 KRIASEICIQYTE---DFNETILGFANNVKTGDGGTHITGFKTGLVRAINDYAKNNKILK 287

Query: 352 KRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
            +   + S+DL    V I++V I E   E+ GQTK KL + DA+  VE    D  + +L+
Sbjct: 288 DKDPRLDSNDLREGLVAIVTVKIPEDLIEYEGQTKGKLGTPDAKIAVEQVTYDFMNFWLI 347

Query: 410 QNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG--KLADCSQNIAHGTELF 467
           +N + ATK++E  +   + R   RK R+  R +  +K       KL           EL+
Sbjct: 348 ENKVPATKIIEKAMLARKAREEARKARQAIRDSKGKKTTRAMLGKLTPAQGRKKEINELY 407

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           +VEGDSAGGSAK  R+R+ QA+LPLRGK++N   A   ++  N++I  ++ A+G      
Sbjct: 408 LVEGDSAGGSAKSGRDRTFQAILPLRGKVINSEKAKLAELMKNEEIQTIITAIGAGIGQD 467

Query: 528 YREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT-QGT 586
           +   D+ Y KVIIMTDAD DGAHI +LLLTFFY+ M DLI  KH+F+  PPL+++T    
Sbjct: 468 FDVNDINYGKVIIMTDADTDGAHIQTLLLTFFYRYMKDLIINKHVFIALPPLYKLTFADR 527

Query: 587 KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
           K +Y  DEE     L +F K    K EI R+KGLGEM
Sbjct: 528 KFIYLWDEEE----LADFAKTATKKYEIQRYKGLGEM 560


>gi|94987227|ref|YP_595160.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Lawsonia intracellularis PHE/MN1-00]
 gi|94731476|emb|CAJ54839.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Lawsonia intracellularis PHE/MN1-00]
          Length = 799

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 227/574 (39%), Positives = 330/574 (57%), Gaps = 19/574 (3%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A  ++    +Y A SI ILEGL+ VRMRP MYIG TD + LHHL  EVIDN++DE +AG+
Sbjct: 2   ASNSEIIPKDYTADSITILEGLQAVRMRPAMYIGSTDTRGLHHLVYEVIDNSIDEAMAGF 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
              I+V L  +  +TV DNGRGIPV+ HPK      +++++T LHAGGKFDN TY++SGG
Sbjct: 62  CTRIDVVLHLDNSITVRDNGRGIPVDIHPK-EGVPAVQVVMTKLHAGGKFDNDTYKVSGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+S VNALS++L VT+ R    + QK+SRG+PL  L++  +  +  GT I F+ D 
Sbjct: 121 LHGVGLSCVNALSEQLEVTILRGGYRWKQKYSRGVPLENLQRIGE-SDNHGTTIRFKADE 179

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IF     +    L +  +  AYL+  ++   + ++         E   F   GG+  ++
Sbjct: 180 EIFET-TEYSYETLKRRFEELAYLNKGLEIHCTDER-------TSETHLFKAEGGIHQFV 231

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESG 333
           +      S++ S I      +       +++   + E      ++ N I T EGGTH +G
Sbjct: 232 KDINTGESILHSIISRESIVEGVMIDFALQYNAGYKE---NTLTFANNIRTKEGGTHLAG 288

Query: 334 LRVALTRGIKKY----AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            + ALTR I  Y     +L++  +  ++  DD+      +LSV +  P+F GQTKTKL +
Sbjct: 289 FKTALTRAINGYIKGQPDLSKKLKGQTLSGDDVREGLTAVLSVKLPNPQFEGQTKTKLGN 348

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448
            +    V  A+    D Y  +NP +   +++  I+ +  R   R+ +E V RK A+    
Sbjct: 349 SEIAGIVGGAVYTSLDTYFQENPKDIRCIIDKAIDAARAREAARRAKELVRRKGALFDNA 408

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADC       +ELFIVEGDSAGGSAKQ RN + QA+LPLRGKILN+     +K+ 
Sbjct: 409 LPGKLADCQSKNPAESELFIVEGDSAGGSAKQGRNPNIQAILPLRGKILNIERTRFDKML 468

Query: 509 NNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
            N++I  L+ A+G          + LRY K++IMTDADVDGAHI +LLLTFF++    LI
Sbjct: 469 ANKEIKALITAMGAGIGEEDTDYQKLRYYKIVIMTDADVDGAHIRTLLLTFFFRNYVGLI 528

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           E+ HL++  PPL+R+       +  D+      L
Sbjct: 529 ERGHLYIAQPPLYRVHNSKSEKFIKDDPSLNDFL 562



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652
                 K+ +      +  I I R+KGLGEM   QL  T MD   RTLL+V IN      
Sbjct: 710 TINDLFKLYQFTLDEARKGINIQRYKGLGEMNPEQLWVTTMDPQNRTLLQVTIND----A 765

Query: 653 KDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           ++  ++  +LMG + + R +FI+  A  + D+ 
Sbjct: 766 EEANETFEQLMGERVEPRREFIERNALNVRDLD 798


>gi|303256368|ref|ZP_07342382.1| DNA gyrase, B subunit [Burkholderiales bacterium 1_1_47]
 gi|331001506|ref|ZP_08325124.1| DNA gyrase, B subunit [Parasutterella excrementihominis YIT 11859]
 gi|302859859|gb|EFL82936.1| DNA gyrase, B subunit [Burkholderiales bacterium 1_1_47]
 gi|329568235|gb|EGG50052.1| DNA gyrase, B subunit [Parasutterella excrementihominis YIT 11859]
          Length = 836

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 236/602 (39%), Positives = 340/602 (56%), Gaps = 33/602 (5%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94
            N SA ++Y   +I++LEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +AGYA
Sbjct: 7   KNYSAEESYGEDAIQVLEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGYA 66

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           + I V+++ +  +TVVDNGRGIP +        P +S  EI LT LHAGGKF+ ++Y++S
Sbjct: 67  DHINVTINRDESITVVDNGRGIPTDVKMSDKHEPKRSAAEIALTELHAGGKFNQNSYKVS 126

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI---------------PLSPLEKK 196
           GGLHGVG+S VNALS  L +TV R+       F +G+                       
Sbjct: 127 GGLHGVGVSCVNALSSWLKLTVRREGVEHYLNFKKGVLQDRLTEKVQTPTGPVEISPMHV 186

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
               ++RGT + F PD +IFG    F    L    +  ++L+  VK   +  ++  +   
Sbjct: 187 SGATDRRGTEVQFLPDAEIFGTV-DFHYEVLSSRLRELSFLNNGVKIHLADLRKGKD--- 242

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFT--GKTEKKGTHRGTVEWAIAWCEEN-P 313
               E F F GG+  ++     +++ I    F               VE A+ W +    
Sbjct: 243 ----EVFQFAGGVSGFVDFINRDKTKIHDNCFYTNKTVTVNPEENINVEVAMQWTDGYTE 298

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
              +Y N I   +GGTH +GLR A+T  IK+Y E ++   K  I +  +D+      +LS
Sbjct: 299 NFLAYTNNIPQKDGGTHVNGLRSAMTAVIKRYIEESEFAKKEKIDLTGEDIREGLTCVLS 358

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           + + EP+F+ QTK KLVS +A+  VE  +R   + YL +NP +A  + E +++ +  R  
Sbjct: 359 LKMPEPKFSSQTKDKLVSSEARPAVEQVVRTALESYLQENPKDARIICEKIMDAARAREA 418

Query: 432 RRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            RK RE  R+  +     LPGKLADCS+      E+F+VEGDSAGGSAKQ R+RS QA+L
Sbjct: 419 ARKARETTRRKGLLGSAGLPGKLADCSERDRSLCEVFLVEGDSAGGSAKQGRDRSFQAIL 478

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           PLRGK+LNV  A  EK+ +++QI  L+ ALG     ++  + LRY++VIIMTDADVDGAH
Sbjct: 479 PLRGKVLNVEKARIEKLISSEQIATLIAALGTSIGDEFDLDKLRYDRVIIMTDADVDGAH 538

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           I +LLLT FY++M  LIE  H+++  PPL+++  G K+ Y  D++     L +    G  
Sbjct: 539 IRTLLLTLFYRQMPKLIEGGHVYIAQPPLYKVEYGQKTKYIKDDKELYTFLVDQGITGTN 598

Query: 611 KI 612
             
Sbjct: 599 LY 600



 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 13/134 (9%)

Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDE-EHKQKILEEFKKHGKGKI 612
           L LT       +L+ +         L R T   +++            + +  K G  K+
Sbjct: 715 LTLTAASVTFKNLLHEG----AC--LVRTTNNKETIQPISNFSEAISFILKIGKAGVKKM 768

Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
              R+KGLGEM A +L+ET MD  KR+LL+V I   +           KLMG + + R +
Sbjct: 769 --QRYKGLGEMKAEELEETTMDPTKRSLLKVRIEDAI----AADQVFTKLMGDEVEPRRR 822

Query: 673 FIQERASFIDDVGT 686
           FI++ A    ++ T
Sbjct: 823 FIEDNALLAGNIDT 836


>gi|171462835|ref|YP_001796948.1| DNA gyrase, B subunit [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171192373|gb|ACB43334.1| DNA gyrase, B subunit [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 832

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 229/592 (38%), Positives = 340/592 (57%), Gaps = 30/592 (5%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGY 93
              +   + Y A+SI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DEV+AGY
Sbjct: 2   TEEKKVVEQYGAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEVLAGY 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
            + I V +  +  +++VDNGRG+P          P +S  EI +T LHAGGKFD ++Y++
Sbjct: 62  CSEITVVIQTDNSISIVDNGRGVPTGIKYDDKHEPKRSAAEIAMTELHAGGKFDQNSYKV 121

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK-----------V 199
           SGGLHGVG+S VNALS  L +T+ R    +  +F+RG+  +     E             
Sbjct: 122 SGGLHGVGVSCVNALSKWLRLTIRRDGKAYYMEFARGVIQNRNVVDEGGVLISPITVTGD 181

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
               GT + F  D +IFG+   F    L+K  +  ++L+  V       +         +
Sbjct: 182 TELSGTEVHFLADEEIFGNV-EFHYEILVKRIRELSFLNNGVHIKLIDQR-------TSQ 233

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK--KGTHRGTVEWAIAWCEENPEI-T 316
           KE+F F GG+K +++   + ++++   IF  +  +      + T E ++ W +   E   
Sbjct: 234 KEDFAFSGGVKGFVEYINQTKNILHPNIFYAEGVRPSDLGGQITAEVSMQWNDGFSEQVL 293

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
            + N I   +GGTH +GLR A+TR I KY +  +   K  + I  DD+      +LSV +
Sbjct: 294 CFTNNIPQRDGGTHLTGLRAAITRVINKYIDENEIAKKAKVEISGDDMREGLACVLSVKV 353

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP+F+ QTK KLVS + +  VE  + +    YL + P +A  L   +++ +  R   RK
Sbjct: 354 PEPKFSSQTKDKLVSSEVRGPVEEIVAEALSAYLQERPADAKILCGKIVDAARAREAARK 413

Query: 435 QREVNR-KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            R++ R K A+  L LPGKLADC +     +ELFIVEGDSAGGSAKQ R+R  QA+LPL+
Sbjct: 414 ARDMTRCKGALDGLGLPGKLADCQEKDPSKSELFIVEGDSAGGSAKQGRDRRFQAILPLK 473

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIA 552
           GKILNV  A  +K+  +Q+++ L+  LG     +  + + LRY ++IIMTDADVDG+HI 
Sbjct: 474 GKILNVEKARFDKMFASQEVVTLITVLGTGIGIEEYKADKLRYHRIIIMTDADVDGSHIR 533

Query: 553 SLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           +LLLTFFY++M +LIE+ H+F+  PPL+++  G    Y  D+    ++L   
Sbjct: 534 TLLLTFFYRQMPELIERGHIFIAQPPLYKVKFGKSEQYIKDDNELNQLLLRI 585



 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 7/103 (6%)

Query: 583 TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLR 642
            +  K          +          +  +   R+KGLGEM  SQL ET MDAN RTLL+
Sbjct: 736 DKNQKEQ---TIGDFRAAFAWLLSEAERVLSRQRYKGLGEMNPSQLWETTMDANSRTLLQ 792

Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           V+I   +            LMG + + R  FI++ A    ++ 
Sbjct: 793 VKIEDAI----AADQVFTTLMGDEVEPRRAFIEKNALIARNLD 831


>gi|27904523|ref|NP_777649.1| putative DNA gyrase subunit b [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|31076740|sp|Q89B37|GYRB_BUCBP RecName: Full=DNA gyrase subunit B
 gi|27903920|gb|AAO26754.1| putative DNA gyrase subunit b [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 804

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 232/587 (39%), Positives = 354/587 (60%), Gaps = 25/587 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + Y +S+I+IL+GL+ V+ RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I V+
Sbjct: 3   NTYTSSNIKILKGLDAVKKRPGMYIGNTDDGTGLHHMVFEVVDNSIDEALAGFCKNIIVT 62

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  +++ D+GRGIP + H +    S  E+I+T LHAGGKFDN++Y++SGGLHGVG+S
Sbjct: 63  IHDDNSISIQDDGRGIPTDIHDE-EGISAAEVIMTVLHAGGKFDNTSYKVSGGLHGVGVS 121

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L + + R   I+ Q +  G P + L      +   GT+I F P+ +IF +  
Sbjct: 122 VVNALSKKLELFIYRDKKIYYQIYKNGYPKNTLSIIGYTK-ITGTKIRFWPNLEIFTNVT 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F+   L K  +  ++L+  V       K+          E FY  GGLK ++    +N+
Sbjct: 181 QFNWEILSKRLRELSFLNSNVSIYLDDAKKHIN-------ENFYQQGGLKEFIIYLNKNK 233

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
             I S+IF   ++K       VE A+ W +     I  Y N I   +GGTH SG R ALT
Sbjct: 234 KPIHSKIFYFSSKKNNV---EVEIAMQWNKGFQENIYCYTNNIPQQDGGTHLSGFRSALT 290

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  Y +      K  I+II DD       I+S+ I +P+F+ QTK KLVS + +  +E
Sbjct: 291 RTMNNYLDKEGYIKKNKINIIGDDTREGLTAIISIKINDPKFSSQTKNKLVSSEVKSALE 350

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADC 456
           + + +    +L++NP E+  ++  +IE S  R   R+ RE+ RK   +  + LPGKL+DC
Sbjct: 351 SLVNEFLMEFLLENPQESKNIVTKIIESSRVRNAARRAREMTRKKGTLDLIGLPGKLSDC 410

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            +     +E+++VEGDSAGGSAKQARNR NQA+LPL+GKILNV  A  EK+ ++Q++  L
Sbjct: 411 QERDPALSEIYLVEGDSAGGSAKQARNRKNQAILPLKGKILNVEKARYEKMLSSQEVTTL 470

Query: 517 VQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           + ALGC   +++Y  E LRY ++IIMTDADVDG+HI +LLLTFFY+ M ++I++ +L++ 
Sbjct: 471 ITALGCGIGKNEYNPEKLRYHRIIIMTDADVDGSHIRTLLLTFFYRYMPEIIQRGYLYIA 530

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEE-------FKKHGKGKIEIS 615
            PPL+++T+  K+ Y  D+   +             + +   +I+I 
Sbjct: 531 QPPLYKVTKNNKTRYIKDKNTMENYKLSTALENTILESNTDKEIKIK 577



 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +  K+   +  ++ QK  E   ++    + I R+KGLGEM   QL +T M+   R +L
Sbjct: 707 IKKNNKT---YSIKNFQKNFELLIQNSFKNVLIQRYKGLGEMNPEQLWKTTMNPETRRML 763

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           ++ +    +++  T    N LMG   + R  FI+  A    ++ 
Sbjct: 764 KITL----HNIDTTNKLFNTLMGDSVEPRKLFIELYALKASNID 803


>gi|319940695|ref|ZP_08015037.1| DNA gyrase subunit B [Sutterella wadsworthensis 3_1_45B]
 gi|319805846|gb|EFW02613.1| DNA gyrase subunit B [Sutterella wadsworthensis 3_1_45B]
          Length = 849

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 239/621 (38%), Positives = 343/621 (55%), Gaps = 35/621 (5%)

Query: 15  QSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKA 73
               S++  +   ++            + Y+A+SI+ILEGLE VR RPGMYIG T D   
Sbjct: 4   AENSSNQAPQPLPQVQSLDEVQPDQNPNAYNAASIQILEGLEAVRKRPGMYIGDTADGSG 63

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTL 130
           LHHL  EV+DN++DE +AG+A+ IEV++  +  ++V D+GRGIP          P +S  
Sbjct: 64  LHHLVYEVVDNSIDEALAGFASHIEVTIHTDNSISVTDDGRGIPTAIKWDDKHDPKRSAA 123

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           EI LT LHAGGKFDN+ Y+ISGGLHGVG+S VNALS  L + V R     S +F RG  +
Sbjct: 124 EIALTELHAGGKFDNNGYKISGGLHGVGVSCVNALSTWLRLVVRRDGEARSLEFRRGKVV 183

Query: 191 SPLEKK------EKV-----------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
           + L +        K             N+RGT + F PD +IF     F    LL   + 
Sbjct: 184 NRLIENAIDPATGKSVRISPMTLLGPTNRRGTEVHFLPDLEIFEQVTEFSYETLLSRLRE 243

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            ++L+  V       +   E        +     GL  Y++ K ++R+++  +IF  K  
Sbjct: 244 LSFLNSGVFITLKDLRTSHE-------AQLKTDKGLIAYVEYKNQSRTVLHPKIFHAKET 296

Query: 294 K-KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ- 350
                    VE A+ W +     +T+Y N I   +GGTH +GLR A+TR +K Y    + 
Sbjct: 297 VLSNGSPVEVEVAMQWQDSYNESLTAYTNNIPQRDGGTHVTGLRGAMTRVLKNYIAKNEL 356

Query: 351 -NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
             K  +    DD+      +LSV I +P+F+ QTK KLVS + +  VE+ +    + YL 
Sbjct: 357 AKKSKVDPDGDDMREGLTCVLSVKIPQPKFSSQTKDKLVSSEVRPAVEDVVSRELELYLE 416

Query: 410 QNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           QNP +A  + E +I  +  R   RK R++ RKT +    LPGKLADC +     +ELF+V
Sbjct: 417 QNPTDAKLICEKIITAARAREAARKARDLTRKTGM-GGGLPGKLADCREKNPAYSELFLV 475

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           EGDSAGGSAKQ RN   QA+LPLRGK+LNV  A  +K+ +++QI  L  ALG      + 
Sbjct: 476 EGDSAGGSAKQGRNSQYQAILPLRGKVLNVEKAAQDKLLDSEQIRMLTLALGTNIGKLFD 535

Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV 589
            E LRY ++IIMTDADVDGAHI +LLLT F+++M +LIE  ++++  PPL+++ + +K  
Sbjct: 536 IEKLRYHRIIIMTDADVDGAHIRTLLLTLFFRQMPELIENGYVYIAQPPLYKVQKNSKDK 595

Query: 590 --YAHDEEHKQKILEEFKKHG 608
             +  DE      L++    G
Sbjct: 596 GRFLKDEAEMNAYLKDLALSG 616



 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 8/105 (7%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G +     +       L    + G  +    R+KGLGEM   QL++T MD   R +L
Sbjct: 753 IERGGEREPVKNFAEAVGWLMRQAEKGLIR---QRYKGLGEMTPEQLRDTTMDPAVRRML 809

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           RV I        +     + LMG   + R  FI+  A F  ++  
Sbjct: 810 RVRIED----AANADAIFSMLMGDVVEPRRAFIESNALF-GNIDA 849


>gi|283778833|ref|YP_003369588.1| DNA gyrase, B subunit [Pirellula staleyi DSM 6068]
 gi|283437286|gb|ADB15728.1| DNA gyrase, B subunit [Pirellula staleyi DSM 6068]
          Length = 830

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 213/578 (36%), Positives = 317/578 (54%), Gaps = 20/578 (3%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           +     ++   +Y+A SI+ L  LE VR+RP MYIG    + LHHL  EV+DN++DE +A
Sbjct: 2   ADELTPENVEKDYNAESIKHLSDLEHVRLRPAMYIGDITARGLHHLVYEVVDNSIDEAMA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHP-----KFPNKSTLEIILTTLHAGGKFDNS 146
           G+A  + V ++ +G +TV D+GRGIPVE H      +  + STLE ++T L  GGKFD  
Sbjct: 62  GHAKQVSVIVNTDGSVTVEDDGRGIPVERHEQLSASEGRDVSTLEGVMTKLKFGGKFDKD 121

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y+ SGGLHGVG++VVN LS    V V R   I+ Q +  G P  P+ +     ++ GT+
Sbjct: 122 SYKTSGGLHGVGVTVVNFLSQWAEVQVCRGGKIYQQSYETGAPTGPVREIGST-DRTGTK 180

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
            TF+PD  IF     +    L K  Q  A+L+  V+  +  ++         E  EF + 
Sbjct: 181 TTFKPDGTIFQTT-KYQYDILHKRLQELAFLNSGVRIKFKDER-------NGEGAEFCYE 232

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTD 325
            G+  +++       +I S++   + E         E A+ +  E  E    Y N I T 
Sbjct: 233 RGIIEFIEHLNRASDVIHSDVIYLRGEVDTV---GFEIALQYSAEYTENLHSYVNNIHTV 289

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           EGGTH SG R ALTR +  Y +     + I+   DD       ++SV +  P+F GQTKT
Sbjct: 290 EGGTHVSGFRSALTRTLNAYGKKEGLFKDITPTGDDFREGLTAVISVRVAHPQFEGQTKT 349

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE--VNRKTA 443
           KL + +    V  A+ +    +L +NP  A  ++   +  +E R   RK +E   +RK A
Sbjct: 350 KLGNGEVDGIVAGAVNEFLAKFLEENPKTAKIIVRKGVLAAEAREAARKAKEVLRSRKNA 409

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKL DC        EL++VEGDSAGGSA+  R R  QA+LPLRGKI+N   + 
Sbjct: 410 LGGGGLPGKLRDCISKEMERCELYLVEGDSAGGSAEGGRLRDFQAILPLRGKIINAYKSR 469

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            +K+  N+++  ++QA+G    ++      RY K+IIMTDADVDG+HI +LLL FFY++M
Sbjct: 470 EDKVLANEEVQSMIQAIGTGIGAEIDLTKRRYNKIIIMTDADVDGSHIRTLLLCFFYRQM 529

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           Y L+   H+++  PPLFR+    ++ Y   +E  +  L
Sbjct: 530 YSLVANGHVYVAQPPLFRVRSKKETYYVQTDEEMRSQL 567



 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 7/108 (6%)

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           P + + +G   +     +  + ++   ++ G+  + ++RFKGLGEM A +L++T +D   
Sbjct: 729 PRYILRRGENEI---PLKELRTLVASIREMGQKGMSVTRFKGLGEMNAEELRDTTLDPKN 785

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           RTL++V +           D    LMG K + R +FI+  A  + ++ 
Sbjct: 786 RTLVQVSM----RDAGAADDMFRVLMGEKVEPRRQFIETHALEVRNLD 829


>gi|115381156|gb|ABI96227.1| DNA gyrase subunit B [Mesoplasma seiffertii]
          Length = 553

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 227/566 (40%), Positives = 329/566 (58%), Gaps = 17/566 (3%)

Query: 67  GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           G T +  LHHL  E++DN++DE +AG AN I V++   G + V DNGRGIPV    +   
Sbjct: 1   GSTSKTGLHHLVWEILDNSIDEAMAGEANTISVTITKEGEVIVEDNGRGIPVGIQ-EDSG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           KS LE++ T LHAGGKFD+ +Y+ISGGLHGVG SVVNALS  + V V R   ++ Q FS 
Sbjct: 60  KSALELVFTQLHAGGKFDSDSYKISGGLHGVGASVVNALSLYVDVLVMRDGNVYHQIFSD 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G       +     +KRGT + F+PDP+IF +   FD   +    +  +YL+  +K   +
Sbjct: 120 GGTKQTELEILGTTDKRGTIVRFKPDPEIFQETVTFDYETIRNKVKQLSYLNKGIKINLT 179

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +       I +  E++FP G+  Y++ K E +S I+  ++    +        VE A+
Sbjct: 180 DQR-------IDKTVEYHFPNGILDYVKEKNETKSKINPSVYYVDGKHDDI---EVEVAL 229

Query: 307 AWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLM 363
            +  E  E   ++ N I T EGG+HE GLR ALTR I +Y+E      K       DD+ 
Sbjct: 230 QYNAEYQENLITFVNNINTHEGGSHEDGLRQALTRVINRYSEKVAKGTKAPSKYSWDDIK 289

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
              V I+S+   +P++ GQTKTKL + DA++ V+  + D F+ +L+++P +A  +L+   
Sbjct: 290 EGMVCIVSIRHTDPQYEGQTKTKLANPDAKKAVDAVVGDSFEEFLLKSPEDAKAILDKNA 349

Query: 424 ERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
              + R+  ++ RE   RK+A+    LPGKLADC    +   EL++VEGDSAGGSAK  R
Sbjct: 350 NAQKARIAAQRAREETRRKSALDTFSLPGKLADCESKDSTIAELYLVEGDSAGGSAKTGR 409

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           NR  QA+LPLRGK+LNV      +   N +I  +V A+G   +       LRY K++IMT
Sbjct: 410 NRKFQAILPLRGKVLNVERVAEARAFANNEIKSIVTAIGTGIKEDLDLTKLRYGKIVIMT 469

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILE 602
           DADVDGAHI +LLLTFFY+ M DL++  ++F+  PPL++I  G K  YA+ +    ++ E
Sbjct: 470 DADVDGAHIRTLLLTFFYRYMKDLVKNGNIFIAQPPLYKIEAGKKVAYAYSDAELDELKE 529

Query: 603 EFKKHGKGKIEISRFKGLGEMLASQL 628
              +    +  I R+KGLGEM   QL
Sbjct: 530 --NEFSNSRYTIQRYKGLGEMDPMQL 553


>gi|317155005|ref|YP_004123053.1| DNA gyrase subunit B [Desulfovibrio aespoeensis Aspo-2]
 gi|316945256|gb|ADU64307.1| DNA gyrase, B subunit [Desulfovibrio aespoeensis Aspo-2]
          Length = 797

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 226/568 (39%), Positives = 328/568 (57%), Gaps = 19/568 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + Y A SI  LEGL  VR RP MYIG TD + LHHL  EVIDN++DE +AGY + I+V+L
Sbjct: 4   NQYTAESITHLEGLAAVRKRPAMYIGSTDIRGLHHLVYEVIDNSIDEAMAGYCDTIKVTL 63

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +   TV DNGRGIPVE HPK      +++ +T LHAGGKFDN +Y++SGGLHGVG+S 
Sbjct: 64  HMDNSCTVTDNGRGIPVEIHPK-EGIPAVQMAMTMLHAGGKFDNDSYKVSGGLHGVGVSC 122

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+ +  TV R    +  KF RG  +  LE+     +  GT   FRPD  IF     
Sbjct: 123 VNALSEFMETTVRRNGKTYRMKFERGAVVHELEELGP-SDATGTTQRFRPDEDIFEV-NQ 180

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L K  +  AYL+  ++  +  ++         + E+F F GG++ Y++     ++
Sbjct: 181 FDYDTLRKRFRELAYLNSGLEIEFKDERS-------GDNEKFKFDGGIRQYVKDLNSGQN 233

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
           +I   ++     +       +++   + E      ++ N I T EGGTH +G + ALTR 
Sbjct: 234 VIGEIVYGEGKSENMIVEFALQYTAGYKE---NTYTFANNIRTIEGGTHLAGYKTALTRA 290

Query: 342 IKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  Y +     + +   +  DD+      ++SV + +P+F GQTKTKL + +A   V   
Sbjct: 291 INNYVQNGDLPKKLIKKLTGDDVREGLTSVISVKLPDPQFEGQTKTKLGNSEASGLVAGV 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +  + +  +NP EA  ++E V++ S  R   RK R+ V RK A+    LPGKLADC  
Sbjct: 351 IYEKLNVFFEENPKEARFIIEKVVDASRAREAARKARDLVRRKGALSDNSLPGKLADCQS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+FIVEGDSAGGSAKQ R+  +QA+LPLRGKILNV     +K+  N++I  ++ 
Sbjct: 411 KRPEDSEIFIVEGDSAGGSAKQGRDPKHQAILPLRGKILNVEKTRMDKMLGNKEIRAMIT 470

Query: 519 ALGCRTRS---QYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ALG        +   + LRY KV+IMTDADVDG+HI +LLLTFF+++  +LI + +L++ 
Sbjct: 471 ALGIGIGHEEDEQDYDKLRYHKVVIMTDADVDGSHIRTLLLTFFFRQYEELITRGNLYIA 530

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEE 603
            PPL+R  +G    +  D+   +  L E
Sbjct: 531 QPPLYRAHKGKFEKFIKDDIELETFLME 558



 Score =  131 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            + +   +  +   +I R+KGLGEM   QL ET M   KRT+L+V I           D 
Sbjct: 714 ALYDSVIEEAQRGWQIQRYKGLGEMNPEQLWETTMHPEKRTMLQVTIED----AAGANDI 769

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
              LMG   + R  FI++ A  + ++ 
Sbjct: 770 FMDLMGDNVEPRRAFIEKNALAVQELD 796


>gi|126643366|ref|YP_001086350.1| DNA topoisomerase IV subunit B [Acinetobacter baumannii ATCC 17978]
          Length = 605

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 247/625 (39%), Positives = 355/625 (56%), Gaps = 29/625 (4%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MY   TD    +HL  EVIDNA+DE +AG+A+ I V++  +G L+V DNGRG+PV+ HP+
Sbjct: 1   MY---TDTSRPNHLAQEVIDNAVDEALAGHADKICVTVYKDGSLSVEDNGRGMPVDIHPE 57

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
           +  +S +EIILT LHAGGKF    Y+ SGGLHGVGISVVNALS  + V V RQ  ++   
Sbjct: 58  Y-GQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISVVNALSTRVEVEVQRQGNLYQMA 116

Query: 184 FSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241
           F +G P++PL   E    +   GT + F P+ K F     F    L    ++KA L+  +
Sbjct: 117 FEQGEPVAPLAVLEGKAPKRATGTTVRFWPEAKYFDSP-KFALKALKHNLKAKAVLAAGL 175

Query: 242 KTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
           K  +             EK E+ F  GL  YL  +L++R ++ +  F    +     R  
Sbjct: 176 KITYIDQ-------INDEKIEWQFENGLVDYLMDELQDREILPNPAFVSSGQAD---RAA 225

Query: 302 VEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISII 358
            E+AI W  E  E    SY N I T +GGTH +GLR  +T  ++++ EL     R + + 
Sbjct: 226 CEFAICWNVEGGEQVQESYVNLIPTAQGGTHVNGLRSGVTEALREFCELRNLLPRNLKLS 285

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
           ++D+      ILS+  +EP+F+GQTK +L S +A   V N  +D F  +L Q+   A +L
Sbjct: 286 AEDVWDGVNYILSLKFQEPQFSGQTKERLSSREAANIVLNIAKDAFALWLNQHAEIAMQL 345

Query: 419 LEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
            E  I ++  RL+    ++V RK  +    LPGKLADC       +ELFIVEGDSAGGSA
Sbjct: 346 AEMAISKAGRRLK--AAKKVERKKIVSGPALPGKLADCVGQTREESELFIVEGDSAGGSA 403

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538
           KQAR+++ QA++P+RGKILN     S+++  +Q++ D+  A+G    S     +LRY K+
Sbjct: 404 KQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIAIAIGVDPGSDDL-SELRYGKI 462

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQ 598
            I+ DAD DG HIA+LL   F +    L+E+ HL++  PPLFRI  G    YA D+E  +
Sbjct: 463 CILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAMPPLFRIDIGKDVHYALDDEELE 522

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            IL+  K  G    +I+RFKGLGEM A QL+ET MD N R L++++++    +       
Sbjct: 523 TILKNVK--GNKNPQITRFKGLGEMNAIQLRETTMDPNTRRLVQLDLDDAHLTAGLLDKL 580

Query: 659 INKLMGTKADERFKF-IQERASFID 682
              L   +A +R    +  RA+  D
Sbjct: 581 ---LAKKRAADRKTIGLSRRANLAD 602


>gi|237749316|ref|ZP_04579796.1| DNA gyrase subunit B [Oxalobacter formigenes OXCC13]
 gi|229380678|gb|EEO30769.1| DNA gyrase subunit B [Oxalobacter formigenes OXCC13]
          Length = 830

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 221/581 (38%), Positives = 331/581 (56%), Gaps = 30/581 (5%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANL 96
           Q   +NY  SSI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN++DE +AG+   
Sbjct: 10  QQNEENYGVSSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGFCTE 69

Query: 97  IEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           I V+L  +  ++VVDNGRG+P          P +S  EI++T LHAGGKFD ++Y++SGG
Sbjct: 70  IHVTLHADNSVSVVDNGRGVPTGIKFDDKNTPRRSAAEIVMTELHAGGKFDQNSYKVSGG 129

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL-----------SPLEKKEKVRNK 202
           LHGVG+S VN LS  L +T+ R       +F++G+P                K   V +K
Sbjct: 130 LHGVGVSCVNGLSTLLKLTIWRDGKEHYMEFAQGLPQNNSVEMINGVECSPIKIVGVSDK 189

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
           +GTR+ F PDP IF     F    L +  +  ++L+  V+   +  +         ++E 
Sbjct: 190 QGTRVQFWPDPTIFTTI-EFQYEVLARRIRELSFLNNGVRIRLTDQR-------TGKEEI 241

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEK--KGTHRGTVEWAIAWCEEN-PEITSYC 319
           F + GG + +++     +S++   IF    E+  +      V+ ++ W +    ++  + 
Sbjct: 242 FAYEGGTRGFVEYINRGKSVLHPTIFQATGERMSELGTPIYVDISMQWNDSYNEQVLCFT 301

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH +GLR A+TR I +Y E  +   K  + +  DD+      +LSV + EP
Sbjct: 302 NNIPQRDGGTHLTGLRAAMTRVINRYIEENELAKKAKVDVTGDDMREGLTCVLSVKVPEP 361

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F+ QTK KLVS + +  VE  +      +L + P +A  +   ++E +  R   RK RE
Sbjct: 362 KFSSQTKDKLVSSEVRGPVEEIITKTLTDFLQEKPNDAKIICSKIVEAARAREAARKARE 421

Query: 438 VNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
           + R+   +  L L  KLADC +      EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+
Sbjct: 422 LTRRKGVLDGLGLSAKLADCQEKDPSMCELYLVEGDSAGGSAKQGRDRKFQAILPLRGKV 481

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLL 555
           LNV  +  EK+ +++QI  L+  LG      ++  + LRY ++IIMTDADVDGAHI +LL
Sbjct: 482 LNVEKSRYEKMLSSEQITTLIATLGTSIGPDEFNIDKLRYHRIIIMTDADVDGAHIRTLL 541

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEH 596
           LT FY++M  L+E+ ++++  PPL++I  G    Y  D+  
Sbjct: 542 LTLFYRQMPQLVERGYVYIAQPPLYKIKNGKDERYLKDDLE 582



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
             + ++  +   +  I   R+KGLGEM   QL ET MD   R LL+V+I   +       
Sbjct: 745 FHQAMQWLRSEAERGISKQRYKGLGEMNPDQLWETTMDPTMRRLLKVKIEDAIT----AD 800

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+  A    ++ 
Sbjct: 801 QIFTTLMGDNVEPRRAFIENHALLAGNID 829


>gi|197120425|ref|YP_002132376.1| DNA gyrase subunit beta [Anaeromyxobacter sp. K]
 gi|196170274|gb|ACG71247.1| DNA gyrase, B subunit [Anaeromyxobacter sp. K]
          Length = 795

 Score =  476 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 214/563 (38%), Positives = 317/563 (56%), Gaps = 16/563 (2%)

Query: 52  LEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVD 111
           LEGLE VR RP MYIG    + LHHL  EV+DN++DE +AG AN I V++  +  +TV+D
Sbjct: 2   LEGLEAVRKRPHMYIGDVGARGLHHLVYEVVDNSVDEAMAGRANEINVAIHADNSITVLD 61

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171
           NG GIP+  HP      TL+++LT LHAGGKF+++ Y++SGGLHGVG++ VNALS+ L  
Sbjct: 62  NGSGIPIGPHPTVKGMDTLDVVLTKLHAGGKFESNAYKVSGGLHGVGVTCVNALSEWLKA 121

Query: 172 TVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMT 231
            V R   +++Q++ RG P   +    + +  RGTRITF+PD  IF     +    L    
Sbjct: 122 EVYRDGKVWAQRYERGTPAGKVTAIGETQR-RGTRITFKPDATIFEV-TEYSFETLSGRL 179

Query: 232 QSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGK 291
           +  A+L+  +K     ++         +K EF F  G++ ++    ++R ++       +
Sbjct: 180 RELAFLNAGLKITIEDERH-------GKKHEFLFKDGIREFVAFLNKSREVLFQPPIALR 232

Query: 292 TEKKGTHRGT-VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            E +       VE A+ W +    ++ ++ N I   EGGTH  G + ALTR I  Y +  
Sbjct: 233 QEVETERGAALVEIALQWNDGYDEKVFAFANNIHNHEGGTHLIGFKAALTRTINAYGQKN 292

Query: 350 QNKRAIS---IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
              + +       DD+      ++SV +    F GQTKTKL + +A+  VE  L +    
Sbjct: 293 NLFKDLKDELPSGDDMREGLAAVISVRLPGASFEGQTKTKLSNTEAKSMVETMLNERLSA 352

Query: 407 YLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTE 465
           +L +NP  A ++   V          R+ +  V RK A+    LPGKLADC       +E
Sbjct: 353 FLEENPNVAKRICGKVAEAARARIAARKARETVRRKGALDSASLPGKLADCQSRDPKESE 412

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
           L++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +K+  + +I  ++ ALG    
Sbjct: 413 LYLVEGDSAGGSAKQGRDRRTQAILPLRGKILNVEKARFDKMLGSAEIATIITALGTGIG 472

Query: 526 SQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ 584
            +  + E +RY K++IMTDADVDG+HI +LLLTFF+++M  +IE+  +++  PPLFR+ +
Sbjct: 473 PEEFDVEKIRYHKIVIMTDADVDGSHIRTLLLTFFFRQMPSVIERGLVYIAQPPLFRVAK 532

Query: 585 GTKSVYAHDEEHKQKILEEFKKH 607
           G K  Y  DE    + L      
Sbjct: 533 GKKESYLKDEAALDEYLLALGTD 555



 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           + +E  KK       I R+KGLGEM   QL ET MD  +RT+L+V ++  +    +  + 
Sbjct: 712 EAVEAVKKAAGQGQTIQRYKGLGEMNPEQLWETTMDPARRTMLQVRVDDTV----EADEV 767

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            + LMG   + R +FI++ A  + ++ 
Sbjct: 768 FSILMGDAVEPRREFIEKHALDVQNLD 794


>gi|220915127|ref|YP_002490431.1| DNA gyrase, B subunit [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219952981|gb|ACL63365.1| DNA gyrase, B subunit [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 795

 Score =  476 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 214/563 (38%), Positives = 317/563 (56%), Gaps = 16/563 (2%)

Query: 52  LEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVD 111
           LEGLE VR RP MYIG    + LHHL  EV+DN++DE +AG AN I V++  +  +TV+D
Sbjct: 2   LEGLEAVRKRPHMYIGDVGARGLHHLVYEVVDNSVDEAMAGRANEINVAIHADNSITVLD 61

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171
           NG GIP+  HP      TL+++LT LHAGGKF+++ Y++SGGLHGVG++ VNALS+ L  
Sbjct: 62  NGSGIPIGPHPTVKGMDTLDVVLTKLHAGGKFESNAYKVSGGLHGVGVTCVNALSEWLKA 121

Query: 172 TVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMT 231
            V R   +++Q++ RG P   +    + +  RGTRITF+PD  IF     +    L    
Sbjct: 122 EVYRDGKVWAQRYERGTPAGKVTAIGETQR-RGTRITFKPDATIFEV-TEYSFETLSGRL 179

Query: 232 QSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGK 291
           +  A+L+  +K     ++         +K EF F  G++ ++    ++R ++       +
Sbjct: 180 RELAFLNAGLKITIEDERH-------GKKHEFLFKDGIREFVAFLNKSREVLFQPPIALR 232

Query: 292 TEKKGTHRGT-VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            E +       VE A+ W +    ++ ++ N I   EGGTH  G + ALTR I  Y +  
Sbjct: 233 QEVETERGAALVEIALQWNDGYDEKVFAFANNIHNHEGGTHLIGFKAALTRTINAYGQKN 292

Query: 350 QNKRAIS---IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
              + +       DD+      ++SV +    F GQTKTKL + +A+  VE  L +    
Sbjct: 293 NLFKDLKDELPSGDDMREGLAAVISVRLPGASFEGQTKTKLSNTEAKSMVETMLNERLSA 352

Query: 407 YLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTE 465
           +L +NP  A ++   V          R+ +  V RK A+    LPGKLADC       +E
Sbjct: 353 FLEENPNVAKRICGKVAEAARARIAARKARETVRRKGALDSASLPGKLADCQSRDPKESE 412

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
           L++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +K+  + +I  ++ ALG    
Sbjct: 413 LYLVEGDSAGGSAKQGRDRRTQAILPLRGKILNVEKARFDKMLGSAEIATIITALGTGIG 472

Query: 526 SQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ 584
            +  + E +RY K++IMTDADVDG+HI +LLLTFF+++M  +IE+  +++  PPLFR+ +
Sbjct: 473 PEEFDVEKIRYHKIVIMTDADVDGSHIRTLLLTFFFRQMPSVIERGLVYIAQPPLFRVAK 532

Query: 585 GTKSVYAHDEEHKQKILEEFKKH 607
           G K  Y  DE    + L      
Sbjct: 533 GKKESYLKDEAALDEYLLALGTD 555



 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           + +E  KK       I R+KGLGEM   QL ET MD  +RT+L+V ++  +    +  + 
Sbjct: 712 EAVEAVKKAAGQGQTIQRYKGLGEMNPEQLWETTMDPARRTMLQVRVDDTV----EADEV 767

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            + LMG   + R +FI++ A  + ++ 
Sbjct: 768 FSILMGDAVEPRREFIEKHALDVQNLD 794


>gi|86156434|ref|YP_463219.1| DNA gyrase subunit B [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85772945|gb|ABC79782.1| DNA gyrase subunit B [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 795

 Score =  475 bits (1223), Expect = e-132,   Method: Composition-based stats.
 Identities = 215/563 (38%), Positives = 317/563 (56%), Gaps = 16/563 (2%)

Query: 52  LEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVD 111
           LEGLE VR RP MYIG    + LHHL  EV+DN++DE +AG AN I V++  +  +TV+D
Sbjct: 2   LEGLEAVRKRPHMYIGDVGARGLHHLVYEVVDNSVDEAMAGRANEINVAIHADNSVTVLD 61

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171
           NG GIPV  HP      TL+++LT LHAGGKF+++ Y++SGGLHGVG++ VNALS+ L  
Sbjct: 62  NGSGIPVGPHPTVKGMDTLDVVLTKLHAGGKFESNAYKVSGGLHGVGVTCVNALSEWLKA 121

Query: 172 TVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMT 231
            V R   +++Q++ RG P   +    + +  RGTRITF+PD  IF     +    L    
Sbjct: 122 EVYRDGKVWAQRYERGTPAGKVTAIGETQR-RGTRITFKPDATIFEV-TEYSFETLSGRL 179

Query: 232 QSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGK 291
           +  A+L+  +K     ++         +K EF F  G++ ++    ++R ++       +
Sbjct: 180 RELAFLNAGLKITIEDERH-------GKKHEFLFKDGIREFVAFLNKSRDVLFQPPIALR 232

Query: 292 TEKKGTHRGT-VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            E +       VE A+ W +    ++ ++ N I   EGGTH  G + ALTR I  Y +  
Sbjct: 233 QEVETERGAALVEIALQWNDGYDEKVFAFANNIHNHEGGTHLIGFKAALTRTINAYGQKN 292

Query: 350 QNKRAIS---IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
              + +       DD+      ++SV +    F GQTKTKL + +A+  VE  L +    
Sbjct: 293 NLFKDLKDELPSGDDMREGLAAVISVRLPGASFEGQTKTKLSNTEAKSMVETMLNERLSA 352

Query: 407 YLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTE 465
           +L +NP  A ++   V          R+ +  V RK A+    LPGKLADC       +E
Sbjct: 353 FLDENPNVAKRICGKVAEAARARIAARKARETVRRKGALDSASLPGKLADCQSRDPKESE 412

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
           L++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +K+  + +I  ++ ALG    
Sbjct: 413 LYLVEGDSAGGSAKQGRDRRTQAILPLRGKILNVEKARFDKMLGSAEIATIITALGTGIG 472

Query: 526 SQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ 584
            +  + E +RY K++IMTDADVDG+HI +LLLTFF+++M  +IE+  +++  PPLFR+ +
Sbjct: 473 PEEFDVEKIRYHKIVIMTDADVDGSHIRTLLLTFFFRQMPSVIERGLVYIAQPPLFRVAK 532

Query: 585 GTKSVYAHDEEHKQKILEEFKKH 607
           G K  Y  DE    + L      
Sbjct: 533 GKKESYLKDEAALDEYLLALGTD 555



 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           + +E  KK       I R+KGLGEM   QL ET MD  +RT+L+V ++  +    +  + 
Sbjct: 712 EAVEAVKKAAGQGQTIQRYKGLGEMNPEQLWETTMDPARRTMLQVRVDDTV----EADEV 767

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            + LMG   + R +FI++ A  + ++ 
Sbjct: 768 FSILMGDAVEPRREFIEKHALDVQNLD 794


>gi|28566177|gb|AAO43433.1| DNA gyrase subunit B [Entomoplasma somnilux]
          Length = 551

 Score =  475 bits (1223), Expect = e-132,   Method: Composition-based stats.
 Identities = 228/564 (40%), Positives = 331/564 (58%), Gaps = 17/564 (3%)

Query: 62  PGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENH 121
           PGMYIG T +  LHHL  E++DN++DE +AG A+ I+VS+  +G + V D+GRGIPV   
Sbjct: 1   PGMYIGSTSKSGLHHLVWEILDNSIDEAMAGAAHEIKVSITKDGEIIVQDDGRGIPVGIQ 60

Query: 122 PKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFS 181
            K   KS LE++ T LHAGGKFD+ +Y+ISGGLHGVG SVVNALS  + V V R    F 
Sbjct: 61  -KDSGKSALELVFTQLHAGGKFDSDSYKISGGLHGVGASVVNALSLYVDVIVERDGKKFH 119

Query: 182 QKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241
           Q FS G  +    +     ++ GT + F+PDP+IF +   FD   +    +  AYL+  +
Sbjct: 120 QLFSNGGTIQSELEILSDSSRTGTTVRFKPDPEIFQESVNFDYITIKNKVKQLAYLNKGI 179

Query: 242 KTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
           K     ++       I +   F+FP G+  Y++ + E ++ I+  +F    + +      
Sbjct: 180 KLNLVDER-------IDKAVNFHFPNGILDYVREENETKTKINPNVFYTDGKFEDI---E 229

Query: 302 VEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISII 358
           VE A+ +  +  E   ++ N I T EGGTHE GLR +LTR I +YAE     NK+     
Sbjct: 230 VEVALQYNADYNENLITFVNNINTHEGGTHEDGLRQSLTRVINRYAEKVVKANKQPQKFS 289

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+    + ILS+   +P+F GQTKTKL + DA++ V+  + D F+ +L+++P +A  +
Sbjct: 290 WDDVKEGVICILSIRHTDPQFEGQTKTKLANPDAKKAVDTIVGDAFEEFLLKSPDDAKAI 349

Query: 419 LEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           L+      + R+  ++ RE   RK A+    LPGKLADC        EL++VEGDSAGGS
Sbjct: 350 LDKNTNAQKARIAAQRAREETRRKGALDTFSLPGKLADCETKDPTIAELYLVEGDSAGGS 409

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  RNR +QA+LPLRGK+LNV      +   N +I  +V A+G   +       +RY K
Sbjct: 410 AKTGRNRKHQAILPLRGKVLNVERVQEARAFTNNEIKSIVTAIGTGIKEDLDLSKIRYGK 469

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           ++IMTDADVDGAHI +LLLTFFY+ M DL+   ++F+  PPLF+I  G K  YA+ +   
Sbjct: 470 IVIMTDADVDGAHIRTLLLTFFYRYMKDLVRNGNIFIAQPPLFKIEAGKKVAYAYSDAEL 529

Query: 598 QKILEEFKKHGKGKIEISRFKGLG 621
           +++  +       +  I R+KGLG
Sbjct: 530 EEL--KLGDFSGSRFTIQRYKGLG 551


>gi|29649150|gb|AAO86864.1| DNA gyrase subunit B [Mesoplasma syrphidae]
          Length = 550

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 225/563 (39%), Positives = 331/563 (58%), Gaps = 17/563 (3%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIG T +  LHHL  E++DN++DE +AG AN I V +   G + V DNGRGIPV    +
Sbjct: 1   MYIGSTSKTGLHHLVWEILDNSIDEAMAGEANTISVVITKEGEVIVEDNGRGIPVGIQ-E 59

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
              KS LE++ T LHAGGKFD+ +Y+ISGGLHGVG SVVNALS  + V V R+  ++ Q 
Sbjct: 60  DSGKSALELVFTQLHAGGKFDSDSYKISGGLHGVGASVVNALSLYVDVLVMREGNVYHQI 119

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           FS G       +  +  +KRGT + F+PDP+IF +   FD   +    +  +YL+  +K 
Sbjct: 120 FSEGGTKQSPLEILETTDKRGTIVRFKPDPEIFQETVTFDYETIRNKVKQLSYLNKGIKI 179

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
             +  +       I +  E++FP G+  Y++ K E ++ I+  ++    +        VE
Sbjct: 180 HLTDQR-------IDKAVEYHFPNGILDYVKEKNETKTKINPSVYYIDGKHDDI---EVE 229

Query: 304 WAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISD 360
            A+ +  E  E   ++ N I T EGG+HE GLR ALTR I +Y+E      K       D
Sbjct: 230 VALQYNAEYQENLITFVNNINTHEGGSHEDGLRQALTRVINRYSEKVAKGTKSPSKYSWD 289

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D+    V I+S+   +P++ GQTKTKL + DA++ V+  + D F+ +L+++P +A  +L+
Sbjct: 290 DIKEGMVCIVSIRHTDPQYEGQTKTKLANPDAKKAVDAVVGDSFEEFLLKSPEDAKSILD 349

Query: 421 WVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
                 + R+  ++ RE   RK+A+    LPGKLADC    +   EL++VEGDSAGGSAK
Sbjct: 350 KNANAQKARIAAQRAREETRRKSALDTFSLPGKLADCESKDSTIAELYLVEGDSAGGSAK 409

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
             RNR  QA+LPLRGK+LNV      +   N +I  +V A+G   +       LRY K++
Sbjct: 410 TGRNRKFQAILPLRGKVLNVERVAEARAFANNEIKSIVTAIGTGIKEDLDLSKLRYGKIV 469

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599
           IMTDADVDGAHI +LLLTFFY+ M DL++  ++F+  PPL++I  G K  YA+ +   ++
Sbjct: 470 IMTDADVDGAHIRTLLLTFFYRYMKDLVKNGNIFIAQPPLYKIESGKKVAYAYSDAELEE 529

Query: 600 ILEEFKKHGKGKIEISRFKGLGE 622
           +  +  +    +  I R+KGLGE
Sbjct: 530 L--KTNEFNSSRYTIQRYKGLGE 550


>gi|158520112|ref|YP_001527982.1| DNA gyrase, B subunit [Desulfococcus oleovorans Hxd3]
 gi|158508938|gb|ABW65905.1| DNA gyrase, B subunit [Desulfococcus oleovorans Hxd3]
          Length = 814

 Score =  475 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 237/592 (40%), Positives = 341/592 (57%), Gaps = 27/592 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              +   + Y+ SSI +LEGLEPVR RP MYIG  D++ LHHL  EV+DN++DE +AGY 
Sbjct: 1   MKKEEIKEAYNESSINVLEGLEPVRKRPSMYIGNVDKEGLHHLVYEVVDNSIDEAMAGYC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I V +  +  ++VVDNGRGIPV  H K  +   +E++LT LHAGGKFDN+ Y++SGGL
Sbjct: 61  DFIHVIIHKDNTVSVVDNGRGIPVGMHEK-EHVPAVEVVLTKLHAGGKFDNNNYKVSGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVGISVVNALS  L V V R   I+ Q FS G   S LE       +RGT+I F+PD  
Sbjct: 120 HGVGISVVNALSSFLEVNVYRDGKIYKQTFSEGQKTSELEIIGDTT-QRGTKIIFKPDTT 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           I      F    L +  +  A+L+  V+      +         E  EF++ GGL T++ 
Sbjct: 179 IMNTDN-FSFDILTRRLRELAFLNNGVRIKIEDHRS-------DESAEFFYEGGLATFVD 230

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
                 +++         EK       +E AI + +     + S+ N I T EGG H  G
Sbjct: 231 YLNRAHAVLHKP-IYISGEKNDVQ---IEAAIQYNDSYSETMYSFANNINTVEGGFHLIG 286

Query: 334 LRVALTRGIKKYAELTQ----NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            + ALTR I +YA         K    I  DD+      ++SV I+ P+F GQTKTKL +
Sbjct: 287 FKGALTRSINQYAASQGGGSSKKNGDKITGDDVREGLTAVISVRIKNPQFEGQTKTKLGN 346

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT-AIRKLR 448
            + +  V++ + +  + +L +NP     +++   E +  R   +K R++ R   ++    
Sbjct: 347 SEVKGYVDSLVYEKLNIFLEENPSVGKIIIKKATEAARARNAAKKARDIARSQGSLLDSS 406

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLA+C  +I    ELF+VEGDSAGGSAKQ R+R  QA+LPL+GKILN+  A  +KI 
Sbjct: 407 LPGKLAECQSSIPAERELFLVEGDSAGGSAKQGRDRRFQAILPLKGKILNIEKARFDKIL 466

Query: 509 NNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
            +++I +++  LG      +Y  E ++Y KVIIMTDADVDGAHI +LLLTFF+++M DLI
Sbjct: 467 KSEEIKNIITVLGTGVGSEEYNIEKIKYHKVIIMTDADVDGAHIRTLLLTFFFRQMQDLI 526

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL------EEFKKHGKGKIE 613
           +Q HL++  PPLF++ +G K VY   E   +         +++ K G+ K++
Sbjct: 527 KQGHLYIAQPPLFKVGRGKKEVYIDSELLLKDYFIQNACEKKYVKTGEKKLQ 578



 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 9/112 (8%)

Query: 576 SPP--LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
            PP  ++      +       +   + +E     GK  +   R+KGLGEM A QL +T M
Sbjct: 709 VPPFTVYNSDTDQEEARFDTVKQLYQYMEAL---GKKGVVFQRYKGLGEMNADQLWQTTM 765

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +   R LL+V I+       +       LMG   + R KFIQE A  ++ + 
Sbjct: 766 EPETRKLLKVTIDD----AAEADAVFTLLMGDVVEPRKKFIQENALEVETLD 813


>gi|308273672|emb|CBX30274.1| DNA gyrase subunit B [uncultured Desulfobacterium sp.]
          Length = 815

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 218/664 (32%), Positives = 351/664 (52%), Gaps = 49/664 (7%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +   + Y + SI++LEGLE VR RP MYIG  D + LHHL  E++DN++DE +AG+ N I
Sbjct: 2   KEEQNTYTSDSIKVLEGLEAVRKRPSMYIGNIDLQGLHHLVYEIVDNSIDESMAGFCNFI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V +  +  ++V D+GRGIPV  H K       E+++  LHAGGKFDN +Y++SGGLHGV
Sbjct: 62  NVIIHTDNSVSVEDDGRGIPVGIH-KTEKVPAAEVVMLKLHAGGKFDNDSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS  L + +     I+SQ F +G  ++ L    + +  RGT+I F+PD +I  
Sbjct: 121 GVSVVNALSVRLDLEIYTDGKIYSQAFEKGKKVTELTITGETKK-RGTKIHFKPDTEILT 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               FD   + K  +  A+L+ +++     ++         +KEEFY+ GG+ ++++   
Sbjct: 180 TDN-FDFEVISKRLRELAFLNKKLRIKVEDERS-------EKKEEFYYEGGITSFVEFIN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRV 336
           ++  ++ S     +  K       VE  + + +   E    + N I T EGG H  G + 
Sbjct: 232 KHTVVLHSP-IYFEGNKNDVM---VEVCLQYNDTFSEKLFSFANNINTVEGGFHVIGFKT 287

Query: 337 ALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I +YA      + +      +D+      ++S+ ++ P+F GQTKTKL + + + 
Sbjct: 288 ALTRVINQYAANGNLSKDLKEKLSGEDVREGLTAVISIRLKNPQFEGQTKTKLGNSEIKG 347

Query: 395 TVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
            VE+ + +    +  +NP  A K+L   +         R+ +  V  K ++    LPGKL
Sbjct: 348 LVESLVNEKLAMFFEENPAIAKKVLSRAIDAARARFAARKARDLVRSKGSMVDATLPGKL 407

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC  +     E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  ++I  +++I
Sbjct: 408 ADCQSSEPSEREIFLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARIDQILKSEEI 467

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
            +++ ALG      +   +++RY K+IIMTDADVDG+HI +LLLT FY+++ ++IE+ +L
Sbjct: 468 KNIIIALGTGVGGEENVVDNIRYHKIIIMTDADVDGSHIRTLLLTLFYRQLPEVIEKGYL 527

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET- 631
           ++  PPL ++ +G    Y  DE+       +                  E     L +  
Sbjct: 528 YIAQPPLLKVGKGKNEKYFKDEQELNDYTIKIFCEQNKLFI--------ESDTQTLSDYG 579

Query: 632 ----AMDANK-----RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS--F 680
                 +  +     R L R  I  D          +  L+    ++   F+Q+     +
Sbjct: 580 LYLFVTNLAEYSSVLRRLERNGIKADF---------VEILLKNHVED-KSFLQDYDKMSY 629

Query: 681 IDDV 684
           I ++
Sbjct: 630 IKNL 633



 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 8/113 (7%)

Query: 576 SPPLFRITQGTKSVYAHDE---EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
            PP + IT    +   + E     K ++L    +  K  + I R+KGLGEM   QL  T 
Sbjct: 707 KPPFY-ITGKDDTEPVNPETKINDKMELLGIILEEAKKGLVIQRYKGLGEMNPDQLWSTT 765

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           M+  KR LL+V++   +    DT +    LMG   + R +FIQ  A  +  + 
Sbjct: 766 MNPEKRNLLQVKVGDSV----DTNEIFTILMGDDVEPRREFIQNNALDVRMLD 814


>gi|162456449|ref|YP_001618816.1| DNA gyrase subunit B [Sorangium cellulosum 'So ce 56']
 gi|161167031|emb|CAN98336.1| DNA gyrase subunit B [Sorangium cellulosum 'So ce 56']
          Length = 832

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 217/579 (37%), Positives = 331/579 (57%), Gaps = 30/579 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +YDA SI  LEGLE VR RPGMYIG   D   LHHL  E +DNA+DE +AG    I V++
Sbjct: 16  SYDAHSITALEGLEAVRKRPGMYIGDVHDGSGLHHLVWEAVDNAVDEHLAGACTEIRVTV 75

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G +++ DNGRGIPV  H K    S  E+++T LHAGGKFDNS+Y++S GLHGVG+S 
Sbjct: 76  HFDGSVSIEDNGRGIPVGMHAK--GVSAAEVVMTVLHAGGKFDNSSYKVSAGLHGVGVSA 133

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNA+S+ L + + R+  ++ Q+++RG+P +PL+    V +K GT++TF+PDP +      
Sbjct: 134 VNAVSEWLKLEIKREGKLWFQEYARGVPKAPLKGIG-VTDKTGTKLTFKPDP-VVFSTVE 191

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F    L    +  A+L+  +       +           E + + GG+  ++    + + 
Sbjct: 192 FSFDVLASRLRELAFLNAGLIIHLHDQR------PDGRAEIYEYKGGISEFVSLLNKTKE 245

Query: 282 LISSEIFTGKTEKKG--------------THRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
            I  ++ +  ++ +               T    VE A+ W       I  Y N +   +
Sbjct: 246 PIHDDVISFVSQHEVGAAGDGANGRGSAATPPVGVEVALQWNGSYTEAIFCYTNNVHNKD 305

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +GLR ALT+ I  Y       + +      +D       +LS+   +P F  QTK
Sbjct: 306 GGTHLTGLRAALTKTINNYGSAHNLFKELKQGLQGEDAREGLTCVLSIKHPDPSFDSQTK 365

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI 444
           +KLVS + +  VE A+ D    Y  +NP  A K++E  +  ++ R   RK REV RK ++
Sbjct: 366 SKLVSSEVKGIVEAAVSDKLGQYFEENPQSAKKIIEKAVVAAKAREAARKAREVIRKGSL 425

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               L GKLADC       +E++IVEG+SAGGSAK  R+R  QA+LPL+GKILNV  A  
Sbjct: 426 DVTSLSGKLADCQSKDPEKSEIYIVEGESAGGSAKMGRDRHFQAILPLKGKILNVERARL 485

Query: 505 EKIRNNQQIMDLVQALGCRTRSQ--YREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
           +++ ++ ++  L+ ALGC       +  + LRY+K+I+MTDADVDG+HI +LLLTFF+++
Sbjct: 486 DRMLSSAEVGTLITALGCGINDAGGFEIDKLRYQKIILMTDADVDGSHIRTLLLTFFFRQ 545

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           M +++E+ +LF+  PPL+R+ +G + +Y  D+    + L
Sbjct: 546 MPEIMEKGYLFIAQPPLYRVRKGKRDLYLKDQGALDEFL 584



 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 35/112 (31%), Positives = 61/112 (54%), Gaps = 8/112 (7%)

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           + +PP +R    +        E+ + +++  ++ GK  I ISR+KGLGEM A +L ET M
Sbjct: 728 IGAPP-YRARTSSGEE---TIENGESLVDYIEERGKKGISISRYKGLGEMNADELWETTM 783

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           + + RTLL+V I+  +     T +    LMG + + R  FI++ A  + ++ 
Sbjct: 784 NPDARTLLQVRIDDAVK----TDELFTILMGDQVEPRRNFIEQNALNVKNLD 831


>gi|88607620|ref|YP_505297.1| DNA gyrase, B subunit [Anaplasma phagocytophilum HZ]
 gi|88598683|gb|ABD44153.1| DNA gyrase, B subunit [Anaplasma phagocytophilum HZ]
          Length = 793

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 212/566 (37%), Positives = 326/566 (57%), Gaps = 10/566 (1%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            +Y+ASSI +L GL+ V+ RPGMYIG TD+   LHH+  EVIDNA+DE +AG+ N I++ 
Sbjct: 2   SSYNASSITVLRGLDAVKKRPGMYIGDTDDGSGLHHMAYEVIDNAIDEALAGFCNKIDIV 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +G ++V DNGRGIP++ H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+S
Sbjct: 62  IAADGSISVTDNGRGIPIDIHEE-EGISAAEVIMTQLHAGGKFDHNSYKVSGGLHGVGVS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  L + + ++   +  +F  G  ++PL+   +  NK+GT + F P   +F    
Sbjct: 121 VVNALSSWLELVIYKEGREYFMRFEEGKAVAPLKMVGECGNKKGTCVRFMPSSDVFS-FT 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  + L    +  ++L+  V       +E                 G+  +++    N+
Sbjct: 180 DFSYSTLENRIRELSFLNSNVSISLKDLRESPVLESNFGNVSDAATKGVSLFVEYLDRNK 239

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALT 339
           + ++  I          +  +VE ++ W +     +  + N I   EGGTH +G R ALT
Sbjct: 240 TPVTPVITLSGIMS--GYEISVEVSMCWNDSYYENMLCFTNNIRQREGGTHLAGFRSALT 297

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  YA       K  +SII +D+      +LS+ + +P F+ QTK KLVS +A+  VE
Sbjct: 298 RCVNNYATNEGYLKKAKVSIIGEDVREGLTCVLSIKMPDPRFSSQTKDKLVSSEARLVVE 357

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
           + + +        NP  A  ++E VI  ++ R   RK RE +  +  +    +PGKLADC
Sbjct: 358 SIMFEKLSSIFETNPKLAMSVVERVIRSAKGREAARKAREVIKSRGTLDFTSIPGKLADC 417

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            +     +ELFIVEG+SAGGSAKQ R+R  QAVL LRGKILNV   G ++  ++ +I  L
Sbjct: 418 QEKSPELSELFIVEGNSAGGSAKQGRDRRCQAVLSLRGKILNVERVGLDRTLSSSEITSL 477

Query: 517 VQALGCRTRS-QYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           + A+G       +    +RY K+IIMTDADVDG+HI +LLLTFF++ M +LI+  +L++ 
Sbjct: 478 IMAIGSNIGIGSFDISKVRYHKIIIMTDADVDGSHIRTLLLTFFFRYMRELIDAGYLYIA 537

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKIL 601
            PPL+++T+  K  Y  ++E     +
Sbjct: 538 QPPLYKLTKHKKDTYIKNDEALSDYI 563



 Score =  110 bits (274), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 4/79 (5%)

Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667
           G+  + + RFKGLGEM A QL +T ++   RTLL+V+I     +        + LMG   
Sbjct: 719 GRKDMALQRFKGLGEMNADQLWDTTLNPQTRTLLKVKIADAEAADAI----FSVLMGDFV 774

Query: 668 DERFKFIQERASFIDDVGT 686
           + R  FI   A  + ++ +
Sbjct: 775 EPRRDFINNNALKVQNIDS 793


>gi|148244172|ref|YP_001218866.1| DNA gyrase subunit B GyrB [Candidatus Vesicomyosocius okutanii HA]
 gi|146325999|dbj|BAF61142.1| DNA gyrase subunit B GyrB [Candidatus Vesicomyosocius okutanii HA]
          Length = 805

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 223/574 (38%), Positives = 347/574 (60%), Gaps = 19/574 (3%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAG 92
           +      S  Y ASSI++L GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG
Sbjct: 2   SKKQSQNSQEYKASSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDESLAG 61

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           Y + I + +  +  +++ DNGRGIP++ HP+    S  E+I+T LHAGGKFDN++Y++SG
Sbjct: 62  YCSKINIIIHEDKSVSINDNGRGIPIDIHPE-EGISAAEVIMTILHAGGKFDNNSYKVSG 120

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVGISVVNALS+ + +TV R N I+ Q +++G+P  P++   K     GT I F+P+
Sbjct: 121 GLHGVGISVVNALSEWVKLTVYRNNKIYYQHYNKGVPEKPIQVIGKSNK-TGTIIHFKPN 179

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
             IF +   F+   L    +  ++L+  V           E++   +K+ F + GG+K++
Sbjct: 180 INIFSNT-EFNYDILANRIRELSFLNSGVHI-------GIEEFSTEKKDIFKYKGGIKSF 231

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHE 331
           ++   + ++ I ++I    T+++      +  A+ W +   + I  + N I    GG+H 
Sbjct: 232 IKHLNKTKTPIHNDIIEINTQREKI---KIVVALQWSDSYQQSIYCFTNNIPQRNGGSHL 288

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G R  LTR +  Y + +    K   SI  +D       I+++ I +P+F+ QTK KLVS
Sbjct: 289 AGFRGGLTRTVNNYIDNSDIAKKEKNSITGEDTREGLTAIINIKIPDPKFSSQTKDKLVS 348

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLR 448
            + +  +E+ + D  + Y ++NP EA  +++ +++ S  R   RK RE+ R+  +     
Sbjct: 349 SEVRAPIESIINDKLNDYFLENPKEAKIIIKKILDASRARNAARKAREITRRKGLFDISS 408

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKL+DC       +E+F+VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  +  EKI 
Sbjct: 409 LPGKLSDCQTKNPVESEIFLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKSRFEKIL 468

Query: 509 NNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
           ++ ++  L+ ALGC    +      LRY K++IMTDADVDGAHI +LLLTFFY+ + +LI
Sbjct: 469 SSAEVGTLITALGCGIGKEEYNLNKLRYHKIVIMTDADVDGAHIRTLLLTFFYRYLPELI 528

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           E  +L++  PPL++I +G +  Y  +++     L
Sbjct: 529 ENGYLYIARPPLYKIKKGKQERYLKNDQELNDYL 562



 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 10/104 (9%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +  +  Y         ++E    + +      R+KGLGEM   QL ET MD  +RTL 
Sbjct: 711 INKKIRVQYF------SHVVEFLMNNARKGQSFQRYKGLGEMNPKQLWETTMDPEQRTLF 764

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V+I   + S     +  + LMG   + R  FI++ A  ++++ 
Sbjct: 765 KVKIEDSIIS----DEVFSTLMGDAVEPRRNFIEDNALSVNNLD 804


>gi|291288761|ref|YP_003505577.1| DNA gyrase, B subunit [Denitrovibrio acetiphilus DSM 12809]
 gi|290885921|gb|ADD69621.1| DNA gyrase, B subunit [Denitrovibrio acetiphilus DSM 12809]
          Length = 792

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 232/583 (39%), Positives = 346/583 (59%), Gaps = 18/583 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           ++Y   SIR+LEGLE VR RPGMYIG   ++ LHHL  EVIDN++DE  AG+ + I++ +
Sbjct: 6   NSYSDDSIRVLEGLEAVRQRPGMYIGSVGQRGLHHLVYEVIDNSIDEASAGFCDTIDIII 65

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G +TV DNGRGIPV  HPK   + T+E+++TTLHAGGKFD+ +Y  SGGLHGVGISV
Sbjct: 66  HIDGSVTVEDNGRGIPVGIHPKV-GRPTVEVVMTTLHAGGKFDSGSYFASGGLHGVGISV 124

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+   VTV R   ++ QK+ RG  ++  ++       RGT++TF+PD +IF     
Sbjct: 125 VNALSEYAEVTVKRDGGVYYQKYERGTAVTEFKRTGDTSK-RGTKVTFKPDHQIFET-LE 182

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F    L +  +  A+L+  +K   + ++         + +E++  GG+ +Y++   + ++
Sbjct: 183 FSYETLTRRFRELAFLNSGLKIKITDER-------YDKADEYHAEGGIVSYVKYLNKAKT 235

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALTR 340
           +I  E        +      VE+AI + +   E    + N I T+EGGTHE+G +   T+
Sbjct: 236 VIIPEPIYHMEMYED--AVQVEFAIIFNDSYTENLYSFVNNIHTEEGGTHEAGFKAGYTK 293

Query: 341 GIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
               +      NK  +++  DD+      I+S+ + EP F GQTKTKL S  A+  VE+ 
Sbjct: 294 VFNNFVNKHGLNKDKVNLTGDDVREGMSAIISIRLNEPVFEGQTKTKLGSAIAKTAVESI 353

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           +      +  +NP    K+LE  ++    R   RK +E   RK  +    LPGKLADC +
Sbjct: 354 MGKFLPDFFEENPAVIKKILEKAMQAFRAREAARKAKELTRRKNVLEVSTLPGKLADCQE 413

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +ELFIVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ +I  L+ 
Sbjct: 414 KDPAKSELFIVEGDSAGGSAKQCRDRRTQAILPLKGKILNVEKARFDKLLSSNEIRALIT 473

Query: 519 ALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
           ALG    +  +  E LRY K+IIMTDADVDGAHI++L++TFF++ M ++IE+ +L++ SP
Sbjct: 474 ALGTGIGKDDFNIEKLRYHKIIIMTDADVDGAHISTLIMTFFFRYMTEIIERGYLYMASP 533

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS--RFK 618
           PL+++ +G    Y  +EE     L +    G     +   R+K
Sbjct: 534 PLYKVKKGKSERYIQNEETMVNYLLDQGLDGVDIAHVQPHRYK 576



 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 7/106 (6%)

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           +++    +             +E+  K G G   + R+KGLGEM   QL ET +D   RT
Sbjct: 693 YKLNVDGEITNFETLTEFVSFVEQRGKKGLG---VQRYKGLGEMNPEQLWETTVDPQSRT 749

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           L RV I       +   +  + LMG     R +FI+  A  + ++ 
Sbjct: 750 LYRVRIED----AEMANELFSLLMGDVVAPRREFIENNALNVRNLD 791


>gi|158954864|gb|ABW84389.1| DNA topoisomerase IV subunit B [Spiroplasma sp. CRAYFISH]
          Length = 559

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 216/576 (37%), Positives = 310/576 (53%), Gaps = 26/576 (4%)

Query: 60  MRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119
            RPGMYIG TD + LHHL  E++DN++DE +AG+A+ I + +  N  +TV DNGRG+P+ 
Sbjct: 1   KRPGMYIGSTDIRGLHHLVWEIVDNSIDEALAGFASEINIIIHKNNGITVKDNGRGVPIG 60

Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179
            H     KST E+I + LHAGGKF    Y+ SGGLHGVG SVVNALS E  VT+ R   I
Sbjct: 61  KH--ASGKSTPEVIFSVLHAGGKFGGDGYKTSGGLHGVGSSVVNALSSEFDVTIYRDKKI 118

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
            + KF+ G  L+            GT + F PDP+IF     F  + + +  +  A+L+ 
Sbjct: 119 SNIKFNNGGKLAQKLTTIGSTATTGTTVYFVPDPEIFKVI-DFSFSTISERIRESAFLNS 177

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            +K     ++         +  E+ F  GL+ ++    E +  I+  I     EK     
Sbjct: 178 GLKITLQDER-------TDKYVEYLFNNGLEEFITYMNEGKKPITPIITFKGIEKDIDVE 230

Query: 300 GTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISI 357
             ++++    E N  + S+ N + T +GG+H  G R  LT+ I +YA       ++  ++
Sbjct: 231 IALQYST---EFNENLLSFANNVKTSDGGSHVVGFRTGLTKVINEYARKEGLLKEKDKNL 287

Query: 358 ISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415
            S D       I+SV I E   ++ GQTK KL + DA+  VEN +      ++++N   A
Sbjct: 288 DSTDTREGLTAIISVKIPESLIQYEGQTKGKLGTSDAKTAVENIVAKQMQFWMLENKTNA 347

Query: 416 TKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKLADCSQNIAHGTELFIVEGD 472
             ++E  +     +   RK RE  R    +      L GKL           ELF+VEGD
Sbjct: 348 YAIIEKALLARTAKEEARKAREAARGNKRKSNSERLLTGKLTPAQNKNKKVNELFLVEGD 407

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           SAGGSAK  R+R  QA+L LRGK++N   A  + + NN++I  ++ A+G    + +  ED
Sbjct: 408 SAGGSAKSGRDRKFQAILSLRGKVINAEKAKLQDLMNNEEINLMIHAIGAGFGNNFDLED 467

Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT--QGTKSVY 590
             Y K+IIMTDAD DGAHI +LLLTFFY+ M  LIE K +++  PPLF+IT  +  K  Y
Sbjct: 468 ANYGKIIIMTDADTDGAHIQTLLLTFFYRFMRPLIEDKRVYIALPPLFKITNLKTKKVSY 527

Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           A DE   +  L+  K     K E+ R+KGLGEM A 
Sbjct: 528 AWDENELKTKLKHLKD----KFELQRYKGLGEMNAE 559


>gi|91203531|emb|CAJ71184.1| strongly similar to DNA gyrase subunit B [Candidatus Kuenenia
           stuttgartiensis]
          Length = 820

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 233/572 (40%), Positives = 341/572 (59%), Gaps = 17/572 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +D YDA+SI+ L G+E VR RP MYIG T    LHHL  E++ N++DE +AG+   I V 
Sbjct: 13  ADAYDATSIKTLGGIEAVRKRPAMYIGDTTANGLHHLVEEIVCNSVDEALAGFCENIAVK 72

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +G +TVVD+GRGIPV+ H K  NKS LE+++T LHAGGKF++ +Y+ SGGLHGVG+S
Sbjct: 73  INVDGSVTVVDDGRGIPVDIH-KETNKSALEVVMTMLHAGGKFEHKSYKTSGGLHGVGVS 131

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+   V V R   ++ Q++ +G  ++P+E +   +  RGT+I F+PD +IF D  
Sbjct: 132 VVNALSEWFEVEVKRNGHVYFQRYEKGEVITPVETRGITKK-RGTKIVFKPDHEIFED-T 189

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    + K  +  A+L+  +K  ++ +K         + E F + GG++ +++     +
Sbjct: 190 AFCYETIAKRLREYAFLNKGLKITFTDEK-------TDKNETFQYEGGIRAFVEELNSGK 242

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
            +I  +I   + E    +   VE A  + E     I S+ N I T EGGTH SG R ALT
Sbjct: 243 EMIHKDIIYLEKE---INEIVVEVAFQYNESYNENIYSFANNINTVEGGTHLSGFRAALT 299

Query: 340 RGIKKYAELTQNKRAIS-IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
           R +  Y +  + +        DD       ++S+ + EP+F GQTKTKL + + Q  VE 
Sbjct: 300 RTLNNYLKNKKIQGEEKAPTGDDYKEGLTAVISIKLPEPQFEGQTKTKLGNREVQGIVET 359

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            + +    Y  + P  A  ++   IE S  R   RK R+   RK A+    LPGKLADCS
Sbjct: 360 IIGEQLGIYFEETPSTAKAIINKGIEASRAREAARKARDLTRRKGALSSSNLPGKLADCS 419

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +ELF+VEG SAGG+AKQ R+R  QA+LPL+G ILNV  A  +K+ +N++I  L+
Sbjct: 420 SRDFETSELFLVEGISAGGTAKQGRDRRVQAILPLKGVILNVEKARIDKMLSNEEIRTLI 479

Query: 518 QALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
            ALG            LRY K+IIMTDAD+DGAHI +LLLTFF+++M +LI++ H+++  
Sbjct: 480 SALGTGIGIDDFNLKNLRYAKIIIMTDADIDGAHIRTLLLTFFFRQMIELIDKGHVYIAQ 539

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           PPLF+I +  +  Y +D++  QK L  F   G
Sbjct: 540 PPLFKIVKNKRQEYIYDDKGLQKKLITFGIEG 571



 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 7/108 (6%)

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           P +++  G   + A       +ILE+ ++  +  +EI R+KGLGEM A +L ET M+ N 
Sbjct: 719 PKYKLIAGESEINAFS---LNEILEKIREIARKGMEIQRYKGLGEMNAEELAETTMNFNT 775

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           RTLL+V++              + L G     R +FI++ A  + ++ 
Sbjct: 776 RTLLKVKVED----AAKADSIFSTLAGKDVQRRREFIEKHALEVRNLD 819


>gi|81251106|gb|ABB69901.1| DNA gyrase subunit B [Nitrosomonas sp. OZK11]
          Length = 554

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 218/559 (38%), Positives = 338/559 (60%), Gaps = 19/559 (3%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIA 91
           PA   +S   +Y++ SI+IL+GL+ VR RPGMYIG T D   LHH+  EV+DNA+DE +A
Sbjct: 8   PAKKAESNQRDYNSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEALA 67

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFP-NKSTLEIILTTLHAGGKFDNSTYEI 150
           GY + I V++  +  +++ DNGRGIP +        +S  EI++T LHAGGKFD+++Y++
Sbjct: 68  GYCDDISVTIHADNSVSIHDNGRGIPTDIKQDDELKRSAAEIVMTELHAGGKFDDNSYKV 127

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS+ L +T+ R   +   +F  G+ ++PL+   +     GT + F 
Sbjct: 128 SGGLHGVGVSVVNALSEWLRLTIHRNGHVHQMEFRDGVAVAPLKVTGQTEKH-GTEVHFL 186

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
               +FGD   +      K  +  ++L+  +K      ++  E       E F F GG++
Sbjct: 187 ASQSVFGD-VTYHYEIFAKRLRELSFLNHGIKIRLVDLRDDRE-------ETFAFTGGIR 238

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++    +++++   IF  +  K      TVE A+ W +    ++  + N I   +GGT
Sbjct: 239 NFVEYINRSKNVLHPNIFYAQGLKDNI---TVEIAMQWNDSYAEQVLCFTNNIPQKDGGT 295

Query: 330 HESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +GLR A+TR +  Y E  +   K  +    DD+      +LSV + EP+F+ QTK KL
Sbjct: 296 HLTGLRAAMTRTLNNYIEKNELARKAKVDTTGDDMREGMTCVLSVKLFEPKFSSQTKEKL 355

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRK 446
           VS + +  VE  +      +L++NP EA  +   +I+ +  R   RK RE+ R+   +  
Sbjct: 356 VSSEVRPVVEEIVTQKLSDFLLENPNEAKIICNKIIDAARAREAARKARELTRRKGVLDS 415

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
           + LPGKLADC +      EL++VEGDSAGGSAKQ R+R  QA++PL+GKILNV  +  +K
Sbjct: 416 MGLPGKLADCQEKDPKLCELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKSRFDK 475

Query: 507 IRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           + ++Q+I+ L+ ALG    + +Y  + LRY ++IIMTDADVDG+HI +LLLTFFY++M +
Sbjct: 476 LISSQEIVSLITALGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPE 535

Query: 566 LIEQKHLFLISPPLFRITQ 584
           LIE+ H+++  PPL++I  
Sbjct: 536 LIERGHIYIAQPPLYKIKH 554


>gi|98990344|gb|ABF60241.1| DNA gyrase subunit B [Entomoplasma lucivorax]
          Length = 557

 Score =  473 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 225/567 (39%), Positives = 330/567 (58%), Gaps = 15/567 (2%)

Query: 67  GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           G T +  LHHL  E++DN++DEV+AGYA  ++V++     + V D+GRGIPV  + +   
Sbjct: 1   GSTSKTGLHHLVWEILDNSIDEVMAGYAQHVKVTITKENEIVVQDDGRGIPVGIN-QDTG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           +  +E++ T LHAGGKFD+ +Y++SGGLHGVG SVVNALS  + V + R+   F   FS 
Sbjct: 60  RPAVELVFTQLHAGGKFDSDSYKVSGGLHGVGASVVNALSLYVDVVIEREGKKFHMLFSD 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G             NK GT + F+PDP+IF +   FD   +    +  AYL+  +K   +
Sbjct: 120 GGTAQTELAIIGESNKTGTTVRFKPDPEIFKETVTFDYTTIRNKVKQLAYLNKGLKISLN 179

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH-RGTVEWA 305
            ++       I +  +F+FP G+  Y++ + E ++ I+  IF    ++ G      VE A
Sbjct: 180 DER-------INKSVDFHFPNGIVDYIREENETKAKINPTIFYVDGKEAGDEGDIEVEIA 232

Query: 306 IAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDL 362
           + +  E  E   ++ N I T EGG HE GLR AL R I +YAE    QNK+      DD+
Sbjct: 233 LQYNSEYNENLITFVNNINTHEGGAHEDGLRQALVRIINRYAEKVAQQNKQPQKFSWDDI 292

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
               + ILS+   +P+F GQTKTKL + DA+R V+  L   F+ +L +NP +A  +L+  
Sbjct: 293 KEGMICILSIRHTDPQFEGQTKTKLANPDAKRVVDAILGKSFEEFLFENPNDAKAILDKN 352

Query: 423 IERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
           +   + R+  ++ RE   RK A+    LPGKLADC  N +  +EL++VEGDSAGGSAK  
Sbjct: 353 VNAQKARIAAQRAREETRRKGALDTFSLPGKLADCESNDSSISELYLVEGDSAGGSAKTG 412

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541
           RNR  QA+LPLRGK+LNV      +   N +I  +V A+G   +       +RY K++IM
Sbjct: 413 RNRHFQAILPLRGKVLNVERVQEVRAFANTEIKSIVTAVGTGIKEDIDLSKIRYGKIVIM 472

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           TDADVDGAHI +LLLTFFY+ M  L++  ++++  PPLF+I  G K  YA+ ++  +++ 
Sbjct: 473 TDADVDGAHIRTLLLTFFYRYMKQLVQNGNIYIAQPPLFKIEAGKKVAYAYSDQELEELK 532

Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQL 628
                    +  I R+KGLGEM   QL
Sbjct: 533 N--GDFSGQRFTIQRYKGLGEMDPMQL 557


>gi|229100795|ref|ZP_04231614.1| DNA gyrase subunit B [Bacillus cereus Rock3-28]
 gi|228682624|gb|EEL36682.1| DNA gyrase subunit B [Bacillus cereus Rock3-28]
          Length = 550

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 219/564 (38%), Positives = 324/564 (57%), Gaps = 20/564 (3%)

Query: 126 NKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFS 185
            +  +E+I+T LHAGGKF    Y++SGGLHGVG SVVNALS EL V V R   I  QK+ 
Sbjct: 2   GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTELEVFVHRDGKIHYQKYE 61

Query: 186 RGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
           RGIP++ L+      +K GT   F+PDP+IF +   ++   L    +  A+L+  +K   
Sbjct: 62  RGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETTEYEFDTLATRMRELAFLNRNIKLTI 120

Query: 246 SCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
              +E  +K      +EF++ GG+K+Y++    ++  I  E    +  K G     VE A
Sbjct: 121 EDKREHKQK------KEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQ---VEVA 171

Query: 306 IAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDL 362
           + + E       S+ N I T EGGTHE G + ALTR I  Y       +    ++  +D+
Sbjct: 172 LQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSNLTGEDV 231

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW- 421
                 I+S+    P+F GQTKTKL + +A+   E+   + F+ +L++NP  A K+++  
Sbjct: 232 REGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKVVDKG 291

Query: 422 VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
            +        ++ +    RK+A+    LPGKLADCS      +E++IVEGDSAGGSAKQ 
Sbjct: 292 TMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQG 351

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541
           R+R  QA+LPL+GKI+NV  A  +KI +N ++  ++ A+G      +  E  RY KVIIM
Sbjct: 352 RDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKARYHKVIIM 411

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           TDADVDGAHI +LLLTFFY+ M  +IE  ++++  PPLF++ QG K  YA++++  +KIL
Sbjct: 412 TDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQQGKKIQYAYNDKELEKIL 471

Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
            E     K    I R+KGLGEM  +QL ET MD   R+LL+V +   +    +  ++   
Sbjct: 472 AELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAI----EADETFEI 525

Query: 662 LMGTKADERFKFIQERASFIDDVG 685
           LMG K + R  FIQE A ++ ++ 
Sbjct: 526 LMGDKVEPRRNFIQENAKYVKNLD 549


>gi|98990342|gb|ABF60240.1| DNA gyrase subunit B [Entomoplasma ellychniae]
          Length = 553

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 222/566 (39%), Positives = 330/566 (58%), Gaps = 17/566 (3%)

Query: 67  GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           G T +  LHHL  E++DN++DE +AG+A+ I ++L  +G + V DNGRGIPV    +   
Sbjct: 1   GSTSKSGLHHLVWEILDNSIDEAMAGFADKITLTLTKDGEVIVEDNGRGIPVGVQ-QDSG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           KS LE++ T LHAGGKFD+ +Y+ISGGLHGVG SVVNALS  + V V R+  I  Q FS 
Sbjct: 60  KSALELVFTQLHAGGKFDSDSYKISGGLHGVGASVVNALSLYVDVEVKREGKIHKQIFSV 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  +    +      + GT++ F+PDP+IF +   +D   +    +  +YL+  +   ++
Sbjct: 120 GGTVQTEIEIIGETVQTGTKVRFKPDPEIFTEVIDYDYETVRNKVKQLSYLNKGLVIQFN 179

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
            ++       I    E++FP G+  Y++ K E +  I+  ++    +        VE A+
Sbjct: 180 DER-------IDRSIEYHFPNGILDYVKEKNETKQKINPSVYYIDGKYGDI---EVEVAL 229

Query: 307 AWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLM 363
            +  E  E   ++ N I T EGGTHE GLR AL R + +YAE     NK+A     DD+ 
Sbjct: 230 QYNAEYQESLITFVNNINTHEGGTHEDGLRQALVRVLNRYAEKVAIGNKQAAKYSWDDIK 289

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
              V I+S+   +P++ GQTKTKL + DA++ V+  + D F+ +L+++P +A  +L+   
Sbjct: 290 EGMVCIVSIRHTDPQYEGQTKTKLANPDAKKAVDVVVGDSFEEFLLKSPEDAKAILDKNA 349

Query: 424 ERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
              + R+  ++ RE   RK+A+    LPGKLADC        EL++VEGDSAGGSAK  R
Sbjct: 350 NAQKARIAAQRAREETRRKSALDTFSLPGKLADCESKDPSIAELYLVEGDSAGGSAKTGR 409

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           NR  QA+LPLRGK+LNV      +   N +I  +V A+G   + +     +RY K++IMT
Sbjct: 410 NRKFQAILPLRGKVLNVERVAEVRAFANAEIKSIVTAIGTGIKEELDLSKIRYGKIVIMT 469

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILE 602
           DADVDGAHI +LLLTFFY+ M  L++  ++++  PPLF+I  G K  YA+ +   +   +
Sbjct: 470 DADVDGAHIRTLLLTFFYRYMKQLVDNGNIYIAQPPLFKIEAGKKVEYAYSDAELENFKQ 529

Query: 603 EFKKHGKGKIEISRFKGLGEMLASQL 628
              K  +    I R+KGLGEM   QL
Sbjct: 530 NEFKDSR--YTIQRYKGLGEMDPIQL 553


>gi|330951451|gb|EGH51711.1| DNA topoisomerase IV subunit B [Pseudomonas syringae Cit 7]
          Length = 595

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 222/612 (36%), Positives = 339/612 (55%), Gaps = 25/612 (4%)

Query: 79  SEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLH 138
            EVIDN++DE +AG+A  ++V L  +  L V D+GRG+PV+ HP+    S +E+ILT LH
Sbjct: 2   QEVIDNSVDEALAGHARSVQVILHADNSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLH 60

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKF N  Y+ SGGLHGVGISVVNALS ++ V V R    +   F+ G   + L     
Sbjct: 61  AGGKFSNKNYQFSGGLHGVGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVVGT 120

Query: 199 V-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           V +   GT + F PDPK F     F  +RL  + ++KA L   +   +            
Sbjct: 121 VGKRNTGTSVYFAPDPKYFDTP-KFSVSRLKHVLKAKAVLCPGLLVSFEDK-------SS 172

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--I 315
            EK E+++  GL++YLQ  +     +  E F G        +  V+WA+ W  E  +   
Sbjct: 173 GEKVEWHYEDGLRSYLQDSVTEFLRLPDEPFCGSFTGN---KEAVDWALLWLPEGGDSVQ 229

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFI 374
            SY N I T +GGTH +GLR  L   ++++ E      R + +  +D+      +LS+ +
Sbjct: 230 ESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKM 289

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
           +EP+F+GQTK +L S +A   V   ++D F  +L  +     +L +  I  +  RL+   
Sbjct: 290 QEPQFSGQTKERLSSREAAAFVSGVVKDAFSLWLNTHSELGLQLADLAINNAGRRLK--A 347

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
            ++V RK   +   LPGKLADC+      +ELF+VEGDSAGGSAKQAR++  QA+LPLRG
Sbjct: 348 SKKVERKRITQGPALPGKLADCAGQDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRG 407

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           KILN       ++  +Q++ ++  A+G    +      LRY K+ I+ DAD DG HIA+L
Sbjct: 408 KILNTWEVDGGEVLASQEVHNIAVAIGVDPGAADI-SQLRYGKICILADADSDGLHIATL 466

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIE 613
           L   F Q    L++  H+++  PPL+RI  G +  YA DE  +  IL+    +  +GK +
Sbjct: 467 LCALFVQHFRPLVDAGHVYVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQ 526

Query: 614 ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFK 672
           ++RFKGLGEM   QL+ET MD N R L+++ ++        T + ++ L+  K A +R  
Sbjct: 527 VTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDD----FAATSEMMDMLLAKKRAGDRKS 582

Query: 673 FIQERASFIDDV 684
           +++ + +  + +
Sbjct: 583 WLESKGNLAEVL 594


>gi|72388577|gb|AAZ67932.1| DNA gyrase subunit B [Psychrobacter cryohalolentis K5]
          Length = 753

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 210/548 (38%), Positives = 332/548 (60%), Gaps = 19/548 (3%)

Query: 60  MRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPV 118
           MRPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I++ +  +  ++V+DNGRG+PV
Sbjct: 2   MRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQIDIIIHEDESVSVMDNGRGVPV 61

Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178
           + HP+    S  ++I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+  
Sbjct: 62  DIHPE-EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGY 120

Query: 179 IFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLS 238
            + Q ++ G+P   +++ E   ++ GT+I F P   +F     F+   L K  +  ++L+
Sbjct: 121 HYHQTYTDGVPDGDIQQMEAT-DQTGTQIRFYPSNDVFTGTI-FEYDILAKRLRELSFLN 178

Query: 239 GRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH 298
             V+   + ++       I ++ EF   GGL  ++      +  I+        +  G  
Sbjct: 179 SGVRIVLTDER-------IDKRHEFEHKGGLSEFVSYINAGKDGINDVFHFISNQDDGI- 230

Query: 299 RGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAI 355
             +VE A+ W +    ++  + N I   +GGTH SG R ALTR +  Y +      K  +
Sbjct: 231 --SVEVALQWTDTYNEKVFCFTNNIPQRDGGTHLSGFRSALTRCLNTYMDRENLFKKEKV 288

Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415
           +   DD       I+SV + +P+F+ QTK KLVS + +  VE+A+ D F+ YL +NP   
Sbjct: 289 AATGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDYLQENPSAG 348

Query: 416 TKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSA 474
             +   +I+ +  R   RK      RKT +    LPGKLADC +     +EL+IVEGDSA
Sbjct: 349 KLIAGKIIDAARARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPALSELYIVEGDSA 408

Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDL 533
           GGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++Q++ +L+ ALGC     +Y  + +
Sbjct: 409 GGSAKQGRSRKTQAILPLKGKILNVERARFDKMLSSQEVGNLITALGCGIGPDEYNPDKV 468

Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHD 593
           RY K+IIMTDADVDG+HI +LLLTFF+++  +LIE+ ++++  PPL+++ +G + +Y  D
Sbjct: 469 RYHKIIIMTDADVDGSHIRTLLLTFFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKD 528

Query: 594 EEHKQKIL 601
           +E  +  L
Sbjct: 529 DEALKAYL 536


>gi|115381154|gb|ABI96226.1| DNA gyrase subunit B [Mesoplasma corruscae]
          Length = 553

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 222/566 (39%), Positives = 330/566 (58%), Gaps = 17/566 (3%)

Query: 67  GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           G T +  LHHL  E++DN++DE +AG+A+ I ++L  +G + V DNGRGIPV    +   
Sbjct: 1   GSTSKSGLHHLVWEILDNSIDEAMAGFADKITLTLTKDGEVIVEDNGRGIPVGVQ-QDSG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           KS LE++ T LHAGGKFD+ +Y+ISGGLHGVG SVVNALS  + V V R+  I  Q FS 
Sbjct: 60  KSALELVFTQLHAGGKFDSDSYKISGGLHGVGASVVNALSLYVDVEVKREGKIHKQIFSA 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  +    +      + GT++ F+PDP+IF +   +D   +    +  +YL+  +   ++
Sbjct: 120 GGTIQTEIEIIGETVQTGTKVRFKPDPEIFTEVIDYDYETVRNKVKQLSYLNKGLVIQFN 179

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
            ++       I    E++FP G+  Y++ K E +  I+  ++    +        VE A+
Sbjct: 180 DER-------IDRSIEYHFPNGILDYVKEKNETKQKINPSVYYIDGKYGDI---EVEVAL 229

Query: 307 AWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLM 363
            +  E  E   ++ N I T EGGTHE GLR AL R + +YAE     NK+A     DD+ 
Sbjct: 230 QYNAEYQESLITFVNNINTHEGGTHEDGLRQALVRVLNRYAEKVAIGNKQAAKYSWDDIK 289

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
              V I+S+   +P++ GQTKTKL + DA++ V+  + D F+ +L+++P +A  +L+   
Sbjct: 290 EGMVCIVSIRHTDPQYEGQTKTKLANPDAKKAVDVVVGDSFEEFLLKSPEDAKAILDKNA 349

Query: 424 ERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
              + R+  ++ RE   RK+A+    LPGKLADC        EL++VEGDSAGGSAK  R
Sbjct: 350 NAQKARIAAQRAREETRRKSALDTFSLPGKLADCESKDPSIAELYLVEGDSAGGSAKTGR 409

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           NR  QA+LPLRGK+LNV      +   N +I  +V A+G   + +     +RY K++IMT
Sbjct: 410 NRKFQAILPLRGKVLNVERVAEVRAFANAEIKSIVTAIGTGIKEELDLSKIRYGKIVIMT 469

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILE 602
           DADVDGAHI +LLLTFFY+ M  L++  ++++  PPLF+I  G K  YA+ +   +   +
Sbjct: 470 DADVDGAHIRTLLLTFFYRYMKQLVDNGNIYIAQPPLFKIEAGKKVEYAYSDAELENFKQ 529

Query: 603 EFKKHGKGKIEISRFKGLGEMLASQL 628
              K  +    I R+KGLGEM   QL
Sbjct: 530 NEFKDSR--YTIQRYKGLGEMDPIQL 553


>gi|298529211|ref|ZP_07016614.1| DNA gyrase, B subunit [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510647|gb|EFI34550.1| DNA gyrase, B subunit [Desulfonatronospira thiodismutans ASO3-1]
          Length = 800

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 240/571 (42%), Positives = 339/571 (59%), Gaps = 21/571 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            Q  S  Y A SI++LEGL  VR RP MYIG TD + L HL  EV+DN++DE +AGY + 
Sbjct: 6   RQENSGEYTAQSIQVLEGLTAVRKRPAMYIGSTDVRGLQHLVYEVLDNSIDEAMAGYCDN 65

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           + +++  +  +T+ DNGRGIPV+ H K  N+  LE+++T LHAGGKFDN++Y++SGGLHG
Sbjct: 66  VRITVHMDNSVTISDNGRGIPVDWHEK-ENRPALEVVMTVLHAGGKFDNASYKVSGGLHG 124

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+SVVNALS+ L VTV R+   + QKF RGIP++ L  +    + RGT I FRPD +IF
Sbjct: 125 VGVSVVNALSEYLEVTVRREGEKYFQKFERGIPVTKLRHEGPSSS-RGTTIKFRPDEEIF 183

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                FD   L K  +  AYL+  ++  +  ++         + + F F GGL ++++  
Sbjct: 184 ST-LDFDYDTLSKRFEELAYLNSGLRIEFQDERYQ-------KSDVFQFDGGLLSFIKNV 235

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            ++  L      +G+      H  ++E  + +       I S+ N I T EGGTH +GLR
Sbjct: 236 NKDSGLHKVIYASGE-----VHNVSMELTLQYKTGYKEHIYSFANNIRTVEGGTHLNGLR 290

Query: 336 VALTRGIKKYAELTQN---KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
            ALTR I  Y +  Q+   K    +  DD+      I+SV + +P+F GQTKTKL + + 
Sbjct: 291 SALTRAINTYIQHAQDLPRKLKQKLTGDDVREGLTSIISVKVPDPQFEGQTKTKLGNSEI 350

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
              V     +    +L +NP +A  ++E V++ +  R   RK +E V RK A+    LPG
Sbjct: 351 SGYVSGIAYEKITTFLNENPKDARIIVEKVVDAARAREAARKAKELVRRKGALSDYSLPG 410

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC       +E+FIVEGDSAGGSAKQ RN  +QA+LPLRGKILNV     EKI  N 
Sbjct: 411 KLADCQSKNPSESEIFIVEGDSAGGSAKQGRNPKHQAILPLRGKILNVEKTRFEKILENN 470

Query: 512 QIMDLVQALGCRTRSQY-REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           +I  L+ A+G     +      LRY K++IMTDADVDGAHI +LLLTFF+++   LIE  
Sbjct: 471 EIKALITAMGAGIGDKELDLSKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQFSQLIENG 530

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +L++  PPL+R+ +G    +  DE+     L
Sbjct: 531 YLYIAQPPLYRVHKGNFEQFISDEKTMHDFL 561



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 4/86 (4%)

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
           +L++  +     I I R+KGLGEM   QL  T MD +KRT+L+V +       +   D  
Sbjct: 718 LLDKVFELAHKGINIQRYKGLGEMNPEQLWSTTMDPDKRTMLQVNVED----AELADDLF 773

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
           ++LMG K + R +FI++ A  + D+ 
Sbjct: 774 SRLMGDKVEPRREFIEKNALEVADLD 799


>gi|72388579|gb|AAZ67933.1| DNA gyrase subunit B [Psychrobacter submarinus]
          Length = 749

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 214/548 (39%), Positives = 334/548 (60%), Gaps = 19/548 (3%)

Query: 60  MRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPV 118
            RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I++ +  +  ++V DNGRG+PV
Sbjct: 1   KRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQIDIIIHEDESVSVSDNGRGVPV 60

Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178
           + HP+    S  ++I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+  
Sbjct: 61  DVHPE-EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGY 119

Query: 179 IFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLS 238
            +SQ ++ G+P S +++ E   +K GT+I F P   +F     FD   L K  +  ++L+
Sbjct: 120 HYSQTYTDGVPDSEIQQMEAT-DKTGTQIRFYPSSDVFTGTV-FDYDILAKRLRELSFLN 177

Query: 239 GRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH 298
             V+   + ++       I ++ EF   GGL  ++      +  I+        +  G  
Sbjct: 178 SGVRIVLTDER-------IDKRHEFEHKGGLSEFVSYINAGKEGINEVFHFTSEQDDGI- 229

Query: 299 RGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAI 355
              VE A+ W +    ++  + N I   +GGTH SG R ALTRG+  Y +      K  +
Sbjct: 230 --AVEVALQWTDTYNEKVFCFTNNIPQRDGGTHLSGFRSALTRGLNSYMDRENLFKKEKV 287

Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415
           ++  DD       I+SV + +P+F+ QTK KLVS + +  VE+A+ D F+ YL++NP  A
Sbjct: 288 AVSGDDAREGLSAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDYLLENPSAA 347

Query: 416 TKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSA 474
             +   +I+ +  R   RK      RKT +    LPGKLADC +     +EL+IVEGDSA
Sbjct: 348 KAIANKIIDAARARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPSLSELYIVEGDSA 407

Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDL 533
           GGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ +L+ ALGC     +Y  + +
Sbjct: 408 GGSAKQGRSRKTQAILPLKGKILNVERARFDKMLSSAEVGNLITALGCGIGPDEYDPDKV 467

Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHD 593
           RY K+IIMTDADVDG+HI +LLLTFF+++  +LIE+ ++++  PPL+++ +G + +Y  D
Sbjct: 468 RYHKIIIMTDADVDGSHIRTLLLTFFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKD 527

Query: 594 EEHKQKIL 601
           +E  +  L
Sbjct: 528 DEALKAYL 535


>gi|28565760|gb|AAO43432.1| DNA gyrase subunit B [Entomoplasma luminosum]
          Length = 555

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 227/565 (40%), Positives = 329/565 (58%), Gaps = 15/565 (2%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIG T +  LHHL  E++DN++DEV+AGYA  ++V++     + V D+GRGIPV  + +
Sbjct: 1   MYIGSTSKTGLHHLVWEILDNSIDEVMAGYAQHVKVTITKEDEIIVQDDGRGIPVGIN-Q 59

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
              +  +E++ T LHAGGKFD+ +Y++SGGLHGVG SVVNALS  + V V R    +   
Sbjct: 60  DTGRPAVELVFTQLHAGGKFDSDSYKVSGGLHGVGASVVNALSLYVDVIVERDGKKYHML 119

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           FS G             +K GT + F+PD +IF +   FD   +    +  AYL+  +K 
Sbjct: 120 FSDGGTKQTELAILGDSDKTGTTVRFKPDAEIFKETTTFDYITIRNKVKQLAYLNKGLKI 179

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH-RGTV 302
             + ++       I +   F+FP G+  Y++ + E++S I+  IF    ++ G      V
Sbjct: 180 TLNDER-------INKSVNFHFPNGIVDYIREENESKSKINPTIFYVDGKEAGDDGDIEV 232

Query: 303 EWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIIS 359
           E A+ +  E  E   ++ N I T EGG HE GLR AL R I +YAE    QNK+      
Sbjct: 233 EIALQYNSEYNENLITFVNNINTHEGGAHEDGLRQALVRIINRYAEKVAQQNKQPQKFSW 292

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD+    + ILSV   +P+F GQTKTKL + D +R V+  L   F+ +L +NP +A  +L
Sbjct: 293 DDIKEGMICILSVRHTDPQFEGQTKTKLANPDTKRVVDAVLGKSFEEFLFENPNDAKAIL 352

Query: 420 EWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
           +      + R+  +K RE   RK A+    LPGKLADC  N +  +EL++VEGDSAGGSA
Sbjct: 353 DKNNNAQKARIAAQKAREETRRKGALDTFSLPGKLADCETNDSSISELYLVEGDSAGGSA 412

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538
           K  RNR  QA+LPLRGK+LNV      +   N +I  +V A+G   +       +RYEK+
Sbjct: 413 KTGRNRHFQAILPLRGKVLNVERVQEVRAFANTEIKSIVTAIGTGIKEDINLSKIRYEKI 472

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQ 598
           +IMTDADVDGAHI +LLLTFFY+ M  L++  ++++  PPLF+I  G K  YA+ ++  +
Sbjct: 473 VIMTDADVDGAHIRTLLLTFFYRYMKPLVQNGNIYIAQPPLFKIEAGKKLAYAYSDQELE 532

Query: 599 KILEEFKKHGKGKIEISRFKGLGEM 623
            +  +  +    +  I R+KGLGEM
Sbjct: 533 TL--KANEFNGQRYTIQRYKGLGEM 555


>gi|73667042|ref|YP_303058.1| DNA gyrase subunit B [Ehrlichia canis str. Jake]
 gi|72394183|gb|AAZ68460.1| DNA gyrase subunit B [Ehrlichia canis str. Jake]
          Length = 798

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 220/571 (38%), Positives = 334/571 (58%), Gaps = 15/571 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           DNY+ASSI +L+GL+ VR RPGMYIG TD+   LHH+  EVIDN++DE +AG+ N I++ 
Sbjct: 2   DNYNASSITVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVIDNSIDEALAGFCNKIDIV 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +G ++V DNGRGIPV+ H +    S  E+I+T LHAGGKFD+S+Y++SGGLHGVGIS
Sbjct: 62  IQSDGSVSVTDNGRGIPVDMH-EDEGMSAAEVIMTQLHAGGKFDHSSYKVSGGLHGVGIS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  L +T+ R    +  +F  G+ + PL    +   K+GTRITF P   IF    
Sbjct: 121 VVNALSTWLELTIWRNGKEYFMRFEDGVTVKPLSVVGENTYKKGTRITFLPSKNIFSSVN 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY-----FPGGLKTYLQT 275
            F+ + L    +  ++L+  +       +            +          G   +++ 
Sbjct: 181 -FNYSTLESRVRELSFLNSSININLKDLRGAQVLNSSFGFRDNSKVSDASDKGTSGFVKY 239

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGL 334
              N++ ++  +       +  H  ++E ++ W +     +  + N I   +GGTH +G 
Sbjct: 240 LDRNKTAVTKIVHIEGIVLE--HGISLELSMHWNDSYYENMLCFTNNIRQRDGGTHLAGF 297

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R A+TR I  YA       K  +SI+ +D+      +LS+ + +P+F+ QTK KLVS +A
Sbjct: 298 RSAMTRCINNYATNEGFLKKAKVSILGEDVREGLTCVLSIKLPDPKFSSQTKDKLVSSEA 357

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
           +  VEN + +   +    NP  A  ++E +I  ++ R   RK RE +  K       LPG
Sbjct: 358 RTVVENIVYEKLTNIFETNPKLAASIIERIIRSAKGREAARKARELIKSKNGFDFTILPG 417

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +ELFIVEG+SAGGSAKQ R+R +QAVL L+GKILNV  A  ++I ++ 
Sbjct: 418 KLADCQEKSPELSELFIVEGNSAGGSAKQGRDRRSQAVLSLKGKILNVERASLDRILSSA 477

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           +I  L+ A+G       +  E +RY KVIIMTDADVDG+HI +LLLTFF++ M ++IE+ 
Sbjct: 478 EIASLITAIGSNIGTENFDIEKIRYHKVIIMTDADVDGSHIRTLLLTFFFRYMREVIERG 537

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +L++  PPL+++T+  K  Y  +++     +
Sbjct: 538 YLYIAQPPLYKVTKHKKEFYIKNDDMLHDYI 568



 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 4/88 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +++   + GK  + + RFKGLGEM + QL +T ++   RTLL+++I+      +     
Sbjct: 715 SLVDNIIEFGKKDMTLQRFKGLGEMNSDQLWDTTLNPETRTLLKLKISD----CEAADSI 770

Query: 659 INKLMGTKADERFKFIQERASFIDDVGT 686
            + LMG   + R  FI   A  + ++  
Sbjct: 771 FSVLMGDFVEPRRDFINNNALNVQNIDA 798


>gi|261838253|gb|ACX98019.1| DNA gyrase subunit B [Helicobacter pylori 51]
          Length = 773

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 231/576 (40%), Positives = 337/576 (58%), Gaps = 17/576 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY + SI++L+GLE VR RPGMYIG T+   LHH+  EV+DNA+DE +AG+ + I ++L
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVGGLHHMVYEVVDNAVDESMAGFCDTINITL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV+ HP         ++LT LHAGGKFDN TY++SGGLHGVG+SV
Sbjct: 62  TDEGSCIVEDNGRGIPVDIHP-TEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDK 219
           VNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +   + GT I F PD  +    
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F A  L K  +  AYL+  +K  +  +K          +E +++  GLK +++   + 
Sbjct: 181 -EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLQETYFYEDGLKQFVKDSAK- 231

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
           + L++  I     +++      V  A A  + N    S+ N I T EGGTHE+G ++ L+
Sbjct: 232 KELLTPVISFKSMDEETRTSIEVALAYAD-DYNENTLSFVNNIKTSEGGTHEAGFKMGLS 290

Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + I +Y +     R    IS+D+    + ++S+ + EP F GQTK+KL S  A+  V   
Sbjct: 291 KAILQYIDENIKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKL 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + D    +L +NP EA  +    I  ++ R   +K RE   +K  +    LPGKLADC  
Sbjct: 351 VYDKIHQFLEENPNEAKIIANKAILAAKAREASKKARELTRKKDNLSVGTLPGKLADCQS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  +   KI  +++I +++ 
Sbjct: 411 KDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMIT 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A GC  +  +  E LRY K+IIMTDADVDG+HI +LL+TFFY+ +  LIEQ H+++   P
Sbjct: 471 AFGCGIQESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           L++  +G   +Y  D       L E   HG   ++I
Sbjct: 531 LYKYKKGKTEIYLKDSIALDHFLIE---HGINSVDI 563



 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
             LEE + H K    I R+KGLGEM  + L ET M    R+L++++I      L+ T   
Sbjct: 690 AFLEEVENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIED----LEKTDAV 745

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            +  MG + + R  FIQ  A     + 
Sbjct: 746 FSLCMGDEVEPRRAFIQAHAKDAKQLD 772


>gi|95020421|gb|ABF50735.1| DNA gyrase subunit B [Mesoplasma entomophilum]
 gi|95020423|gb|ABF50736.1| DNA gyrase subunit B [Mesoplasma entomophilum]
 gi|95020425|gb|ABF50737.1| DNA gyrase subunit B [Mesoplasma entomophilum]
          Length = 553

 Score =  470 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 226/566 (39%), Positives = 324/566 (57%), Gaps = 17/566 (3%)

Query: 67  GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           G T +  LHHL  E++DN++DE +AG+AN I +++   G + V DNGRGIPV        
Sbjct: 1   GSTSKAGLHHLVWEIMDNSVDEAMAGFANKIILTITKEGEIIVQDNGRGIPVGIQA-DSG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           KS LE++ T LHAGGKFD+ +Y+ISGGLHGVG SVVNALS  + V V R+  I  Q FS 
Sbjct: 60  KSALELVFTQLHAGGKFDSDSYKISGGLHGVGASVVNALSLYVDVEVKREGKIHHQVFSG 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G       +     N+ GT + F+PDP+IF +   FD   +    +  +YL+  +    +
Sbjct: 120 GGTQQTEIEIIGETNETGTTVRFKPDPEIFLEGTEFDYETIRNKVKQLSYLNKGLVIELN 179

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +       I +  E++FP G+  Y++ K E +  I+  IF    +        VE A+
Sbjct: 180 DLR-------IDKHVEYHFPNGILDYVKEKNETKPKINPSIFYVDDKHDDI---EVEVAL 229

Query: 307 AWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLM 363
            +  E  E   ++ N I T EGGTHE GLR +L R I +YAE   T NK A     DD+ 
Sbjct: 230 QYNAEYQENLITFVNNINTHEGGTHEDGLRQSLVRVINRYAEKVATGNKPAAKYSWDDIK 289

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
              V I+S+   +P++ GQTKTKL + DA++ V+  + D F+ +L+++P +A  +++   
Sbjct: 290 EGMVCIVSIRHTDPQYEGQTKTKLANPDAKKAVDAVVGDAFEEFLLKSPEDAKAIIDKNA 349

Query: 424 ERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
              + R+  ++ RE   RK+A+    LPGKLADC        EL++VEGDSAGGSAK  R
Sbjct: 350 NAQKARIAAQRAREETRRKSALDTFSLPGKLADCESKDPEIAELYLVEGDSAGGSAKTGR 409

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           NR  QA+LPLRGK+LNV      +   N +I  +V A+G   +       LRY K++IMT
Sbjct: 410 NRRFQAILPLRGKVLNVERVAEVRAFANNEIKSIVTAIGTGIKEDIDLSKLRYGKIVIMT 469

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILE 602
           DADVDGAHI +LLLTFFY+ M  L+   H+++  PPL++I  G K  YA+ +   +++  
Sbjct: 470 DADVDGAHIRTLLLTFFYRYMKQLVVDGHVYIAQPPLYKIEAGKKVAYAYSDAELEELKA 529

Query: 603 EFKKHGKGKIEISRFKGLGEMLASQL 628
                   +  I R+KGLGEM   QL
Sbjct: 530 --GDFKDSRFTIQRYKGLGEMDPIQL 553


>gi|72388585|gb|AAZ67936.1| DNA gyrase subunit B [Psychrobacter glacincola]
          Length = 756

 Score =  470 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 210/548 (38%), Positives = 331/548 (60%), Gaps = 19/548 (3%)

Query: 60  MRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPV 118
           MRPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I++ +  +  ++V+DNGRG+PV
Sbjct: 2   MRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQIDIIIHEDESVSVMDNGRGVPV 61

Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178
           + HP+    S  ++I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+  
Sbjct: 62  DIHPE-EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGY 120

Query: 179 IFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLS 238
            + Q ++ G+P   +++ E   ++ GT+I F P   +F     F+   L K  +  ++L+
Sbjct: 121 HYHQTYTDGVPDGDIQQMEAT-DQTGTQIRFYPSNDVFTGTV-FEYDILAKRLRELSFLN 178

Query: 239 GRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH 298
             V+   + ++       I ++ EF   GGL  ++      +  I+        +  G  
Sbjct: 179 SGVRIVLTDER-------IDKRHEFEHKGGLSEFVSYINAGKDGINDVFHFISNQDDGI- 230

Query: 299 RGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAI 355
             +VE A+ W +    ++  + N I   +GGTH SG R ALTR +  Y +      K  +
Sbjct: 231 --SVEVALQWTDTYNEKVFCFTNNIPQRDGGTHLSGFRSALTRCLNTYMDRENLFKKEKV 288

Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415
               DD       I+SV + +P+F+ QTK KLVS + +  VE+A+ D F+ YL +NP   
Sbjct: 289 VATGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDYLQENPSAG 348

Query: 416 TKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSA 474
             +   +I+ +  R   RK      RKT +    LPGKLADC +     +EL+IVEGDSA
Sbjct: 349 KLIAGKIIDAARARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPALSELYIVEGDSA 408

Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDL 533
           GGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++Q++ +L+ ALGC     +Y  + +
Sbjct: 409 GGSAKQGRSRKTQAILPLKGKILNVERARFDKMLSSQEVGNLITALGCGIGPDEYNPDKV 468

Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHD 593
           RY K+IIMTDADVDG+HI +LLLTFF+++  +LIE+ ++++  PPL+++ +G + +Y  D
Sbjct: 469 RYHKIIIMTDADVDGSHIRTLLLTFFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKD 528

Query: 594 EEHKQKIL 601
           +E  +  L
Sbjct: 529 DEALKAYL 536


>gi|95020419|gb|ABF50734.1| DNA gyrase subunit B [Mesoplasma entomophilum]
          Length = 553

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 226/566 (39%), Positives = 324/566 (57%), Gaps = 17/566 (3%)

Query: 67  GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           G T +  LHHL  E++DN++DE +AG+AN I +++   G + V DNGRGIPV        
Sbjct: 1   GSTSKAGLHHLVWEIMDNSVDEAMAGFANKIILTITKEGEIIVQDNGRGIPVGIQV-DSG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           KS LE++ T LHAGGKFD+ +Y+ISGGLHGVG SVVNALS  + V V R+  I  Q FS 
Sbjct: 60  KSALELVFTQLHAGGKFDSDSYKISGGLHGVGASVVNALSLYVDVEVKREGKIHHQVFSG 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G       +     N+ GT + F+PDP+IF +   FD   +    +  +YL+  +    +
Sbjct: 120 GGTQQTEIEIIGETNETGTTVRFKPDPEIFLEGTEFDYETIRNKVKQLSYLNKGLVIELN 179

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +       I +  E++FP G+  Y++ K E +  I+  IF    +        VE A+
Sbjct: 180 DLR-------IDKHVEYHFPNGILDYVKEKNETKPKINPSIFYVDDKHDDI---EVEVAL 229

Query: 307 AWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLM 363
            +  E  E   ++ N I T EGGTHE GLR +L R I +YAE   T NK A     DD+ 
Sbjct: 230 QYNAEYQENLITFVNNINTHEGGTHEDGLRQSLVRVINRYAEKVATGNKPAAKYSWDDIK 289

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
              V I+S+   +P++ GQTKTKL + DA++ V+  + D F+ +L+++P +A  +++   
Sbjct: 290 EGMVCIVSIRHTDPQYEGQTKTKLANPDAKKAVDAVVGDAFEEFLLKSPEDAKAIIDKNA 349

Query: 424 ERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
              + R+  ++ RE   RK+A+    LPGKLADC        EL++VEGDSAGGSAK  R
Sbjct: 350 NAQKARIAAQRAREETRRKSALDTFSLPGKLADCESKDPEIAELYLVEGDSAGGSAKTGR 409

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           NR  QA+LPLRGK+LNV      +   N +I  +V A+G   +       LRY K++IMT
Sbjct: 410 NRRFQAILPLRGKVLNVERVAEVRAFANNEIKSIVTAIGTGIKEDIDLSKLRYGKIVIMT 469

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILE 602
           DADVDGAHI +LLLTFFY+ M  L+   H+++  PPL++I  G K  YA+ +   +++  
Sbjct: 470 DADVDGAHIRTLLLTFFYRYMKQLVVDGHVYIAQPPLYKIEAGKKVAYAYSDAELEELKA 529

Query: 603 EFKKHGKGKIEISRFKGLGEMLASQL 628
                   +  I R+KGLGEM   QL
Sbjct: 530 --GDFKDSRFTIQRYKGLGEMDPIQL 553


>gi|72388571|gb|AAZ67929.1| DNA gyrase subunit B [Psychrobacter marincola]
          Length = 751

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 214/547 (39%), Positives = 334/547 (61%), Gaps = 19/547 (3%)

Query: 61  RPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119
           RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I++ +  +  ++V DNGRG+PV+
Sbjct: 1   RPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQIDIIIHEDESVSVSDNGRGVPVD 60

Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179
            HP+    S  ++I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+   
Sbjct: 61  VHPE-EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYH 119

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
           +SQ ++ G+P S +++ E   +K GT+I F P   +F     FD   L K  +  ++L+ 
Sbjct: 120 YSQTYTDGVPDSEIQQMEAT-DKTGTQIRFYPSSDVFTGTV-FDYDILAKRLRELSFLNS 177

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            V+   + ++       I ++ EF   GGL  ++      +  I+        +  G   
Sbjct: 178 GVRIVLTDER-------IDKRHEFEHKGGLSEFVSYINAGKEGINEVFHFTSEQDDGI-- 228

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
             VE A+ W +    ++  + N I   +GGTH SG R ALTRG+  Y +      K  ++
Sbjct: 229 -AVEVALQWTDTYNEKVFCFTNNIPQRDGGTHLSGFRSALTRGLNSYMDRENLFKKEKVA 287

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           +  DD       I+SV + +P+F+ QTK KLVS + +  VE+A+ D F+ YL++NP  A 
Sbjct: 288 VSGDDAREGLSAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDYLLENPSAAK 347

Query: 417 KLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            +   +I+ +  R   RK      RKT +    LPGKLADC +     +EL+IVEGDSAG
Sbjct: 348 AIANKIIDAARARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPSLSELYIVEGDSAG 407

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLR 534
           GSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ +L+ ALGC     +Y  + +R
Sbjct: 408 GSAKQGRSRKTQAILPLKGKILNVERARFDKMLSSAEVGNLITALGCGIGPDEYDPDKVR 467

Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDE 594
           Y K+IIMTDADVDG+HI +LLLTFF+++  +LIE+ ++++  PPL+++ +G + +Y  D+
Sbjct: 468 YHKIIIMTDADVDGSHIRTLLLTFFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDD 527

Query: 595 EHKQKIL 601
           E  +  L
Sbjct: 528 EALKAYL 534


>gi|262277739|ref|ZP_06055532.1| DNA gyrase, B subunit [alpha proteobacterium HIMB114]
 gi|262224842|gb|EEY75301.1| DNA gyrase, B subunit [alpha proteobacterium HIMB114]
          Length = 834

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 238/605 (39%), Positives = 340/605 (56%), Gaps = 30/605 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
               +    Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+
Sbjct: 2   STAITKKTEYGADSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
            + I V ++ +  ++V DNGRGIPVE H K    S  E+I+T LHAGGKFD+ TY++SGG
Sbjct: 62  CDTIVVKINKDNSVSVSDNGRGIPVEIH-KTEKISAAEVIMTQLHAGGKFDHKTYKVSGG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS  L V + R    +  +F  GI  +PL++  K  + +GT +TF P  
Sbjct: 121 LHGVGVSVVNALSKSLKVDIFRDGKKYFVEFENGITKAPLKEIGK-SDLKGTNVTFLPSS 179

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IF D   F+ + L K  +  AYL+  +    S +++   K        F F GG+K ++
Sbjct: 180 EIFTD-TKFNLSILEKRLKELAYLNKGLNIQLSDERKEKAKILN-----FKFDGGIKEFV 233

Query: 274 QTKLENRSLISSEIFTGKTEKK-----GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           +   + ++ I +E      E+        +   VE A+ W       +  + N I   +G
Sbjct: 234 KDLNKLKNKIKNEDSQFTLEEPLYFQSNKNDIDVECALLWNSSYNENVLCFTNNIPQKDG 293

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH  G R ++TR I KYA       K  ++I+ DD+    + +LSV + +P+F+ QTK 
Sbjct: 294 GTHLLGFRNSITRLINKYANDFGLLKKDKVTIVGDDVREGLICVLSVKVPDPKFSSQTKE 353

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAI 444
           KLVS + +  VE    +    +  QNP  A  ++  +I+ +  R   RK RE   RK AI
Sbjct: 354 KLVSSEVRPVVETITNEKISLWFDQNPKIAKTIIGKIIQAAVAREVARKARESVRRKNAI 413

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA---- 500
               LPGKLADC  N  + TELFIVEGDSAGGSAKQARNR  QAVLPLRGKILN      
Sbjct: 414 DITSLPGKLADCQSNDINKTELFIVEGDSAGGSAKQARNREFQAVLPLRGKILNTFVEAK 473

Query: 501 ------SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554
                      K+ ++ +I+ L+ A+G      +  E LRY K++IMTDADVDG+HI +L
Sbjct: 474 NNSPDVKKVFSKMLSSNEIVTLINAIGTGVE-PFELEKLRYGKIVIMTDADVDGSHIRTL 532

Query: 555 LLTFF-YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613
           LLTFF  +   +LI++ H+++  PPL++I  G    Y  +E   +K+  E        + 
Sbjct: 533 LLTFFNNKPFNELIKKGHIYIAQPPLYKIKSGKTVNYLKNENDLEKLAIENSLKKIESVT 592

Query: 614 ISRFK 618
               K
Sbjct: 593 FKNNK 597



 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEIN----KDLNSLKDTQDSINKLM 663
           GK  + + RFKGLGEM   +L ET ++    +LL+V  +    +         +    LM
Sbjct: 752 GKKNLSLQRFKGLGEMNPDELWETTLNPENNSLLKVNYSELNGEISEPSSSDDEIFFTLM 811

Query: 664 GTKADERFKFIQERASFIDDVG 685
           G    +R  FI   A  + ++ 
Sbjct: 812 GEDVSKRKNFINSNAINVSNLD 833


>gi|291333913|gb|ADD93593.1| DNA gyrase protein subunit B [uncultured marine bacterium
           MedDCM-OCT-S04-C385]
          Length = 740

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 223/566 (39%), Positives = 338/566 (59%), Gaps = 17/566 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
             +YD+S+I +L+GLE V+ RPGMYIG TD+   LHH+  EV+DN++DE +AGY   + V
Sbjct: 19  EASYDSSNITVLKGLEAVKKRPGMYIGDTDDGTGLHHMIYEVLDNSIDEALAGYCENVTV 78

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  +T+ D+GRGIPV+ H K    S  E+I+T LHAGGKFD+++Y++SGGLHGVGI
Sbjct: 79  TVHDDSKVTISDDGRGIPVDIH-KDEGISAAEVIMTKLHAGGKFDDNSYKVSGGLHGVGI 137

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+ L + V R    ++Q++  G P S L+K     NK GT ITF P  + FG  
Sbjct: 138 SVVNALSEYLLLEVNRDGFSYTQEYKDGTPKSKLKKG-GKSNKTGTSITFIPSLETFGKN 196

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             FD   L K  +  ++L+  +      +++            F   GGL+ ++    + 
Sbjct: 197 RTFDHDTLFKRLRELSFLNSGLSIILKDERD-------GRSSNFKSDGGLEEFVTFLNKK 249

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +S+I+      K  K G     VE A+ W +        Y N I   +GG+H SG + AL
Sbjct: 250 KSVINKPFRFLKETKDG---MAVELALQWNDSYQENTLCYTNNIFQKDGGSHLSGFKTAL 306

Query: 339 TRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  + E     ++  +    +D+      ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 307 TRSLNNFMEKEGYLKSGDLTPSGEDVREGLTAVISVKLPDPKFSSQTKDKLVSSEIKPVV 366

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLAD 455
           E       + +L++NP EA ++   +I+ S  R   RK RE+ R+   +  + LPGKLAD
Sbjct: 367 EQETYKHLNDFLLENPGEAKQIATKIIDASRAREAARKAREMTRRKGVLDGIGLPGKLAD 426

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEG+SAGGSAKQ RNR NQA+ P++GKILNV  A  +K+ N+ +I++
Sbjct: 427 CQEKDPSLSELYIVEGESAGGSAKQGRNRHNQAIYPMKGKILNVERARIDKVLNSDEIVN 486

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ ALGC  +  +  E LRY  V+IMTDADVDG+HI +LLLTFFY+ M +++E  H+F+ 
Sbjct: 487 IITALGCGLKEDFDLEKLRYHSVVIMTDADVDGSHIRTLLLTFFYRHMPEVLEAGHIFIA 546

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKIL 601
            PPL+++ +G    Y  ++   +  L
Sbjct: 547 QPPLYKVGRGKSEEYIKNDSMLRSFL 572


>gi|134093298|ref|YP_001098373.1| DNA gyrase subunit B [Herminiimonas arsenicoxydans]
 gi|133737201|emb|CAL60244.1| DNA gyrase subunit B [Herminiimonas arsenicoxydans]
          Length = 835

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 222/591 (37%), Positives = 332/591 (56%), Gaps = 32/591 (5%)

Query: 29  IPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMD 87
             D+   +  + S  Y ASSI+ILEGLE VR RPGMYIG T D   LHH   EV+DN++D
Sbjct: 5   PNDNTPQSPSTLSAAYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHCVFEVLDNSID 64

Query: 88  EVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFD 144
           E +AG+   I V++  +  +++ DNGRGIP          P +S  EI++T LHAGGKFD
Sbjct: 65  ESLAGHCTEIHVTIHSDNSISITDNGRGIPTGIKWDDKHEPKRSAAEIVMTELHAGGKFD 124

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSP 192
            ++Y++SGGLHGVG+S VN LS  L +T+ R       +F RG+P            +SP
Sbjct: 125 QNSYKVSGGLHGVGVSCVNGLSRLLKLTIRRDGKTHYMEFVRGVPQNREIETIDGHIVSP 184

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
           ++   +  +KRGT + F  D +IF +   F    L K  +  ++L+  V+   S  +   
Sbjct: 185 IKVIGET-DKRGTEVHFWADEEIFNNV-EFHYDILAKRIRELSFLNNGVRIRLSDQR--- 239

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK--KGTHRGTVEWAIAWCE 310
                 ++E F F GG + +++   + +S++   IF    E+         V+ ++ W +
Sbjct: 240 ----TGKEELFAFEGGTRGFVEYINKAKSVLHPTIFQATGERLSDQGTNIAVDVSMQWND 295

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
               ++  + N I   +GGTH +GLR A+TR I KY +  +   K  + +  DD+     
Sbjct: 296 AYNEQVICFTNNIPQRDGGTHLTGLRAAMTRVINKYIDEHEFAKKAKVEVTGDDMREGLT 355

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + EP+F+ QTK KLVS + +  VE  +      YL + P +A  +   ++E + 
Sbjct: 356 CVLSVKVPEPKFSSQTKDKLVSSEVRGPVEEIVAKTLADYLQEKPNDAKIICGKIVEAAR 415

Query: 428 ERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK R++ R+   +  L L  KLADC +      EL++VEGDSAGGSAKQ R+R  
Sbjct: 416 AREAARKARDLTRRKGVMDGLGLSSKLADCQEKDPALCELYVVEGDSAGGSAKQGRDRKF 475

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPLRGK+LNV  A  EK+  ++QI  L+  LG      ++  E LRY ++IIMTDAD
Sbjct: 476 QAILPLRGKVLNVEKARFEKMLASEQITTLIATLGTSIGADEFNIEKLRYHRIIIMTDAD 535

Query: 546 VDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEH 596
           VDGAHI +LLLT  Y++M  L+E+ H+++  PPL+++  G    Y  D+  
Sbjct: 536 VDGAHIRTLLLTLLYRQMPQLVERGHVYIAQPPLYKVKHGKDERYLKDDVE 586



 Score =  123 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 4/91 (4%)

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
               + +   +   +  +   R+KGLGEM  SQL ET MD   R LL+V+I   +     
Sbjct: 748 NDFHQAMNWLRSEAERNVGKQRYKGLGEMNPSQLWETTMDPTVRRLLKVQIEDAI----A 803

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
                  LMG   + R  FI+  A    ++ 
Sbjct: 804 ADQIFTTLMGDDVEPRRAFIELNALSAGNID 834


>gi|254491239|ref|ZP_05104420.1| DNA gyrase, B subunit [Methylophaga thiooxidans DMS010]
 gi|224463752|gb|EEF80020.1| DNA gyrase, B subunit [Methylophaga thiooxydans DMS010]
          Length = 777

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 215/551 (39%), Positives = 331/551 (60%), Gaps = 19/551 (3%)

Query: 64  MYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122
           MYIG TD+   LHH+  EV+DNA+DE +AG+ + I+V +  +  ++V+DNGRGIPV+ H 
Sbjct: 1   MYIGDTDDGTGLHHMVFEVLDNAIDEALAGHCSEIQVRIHPDDSVSVIDNGRGIPVDIHE 60

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
           +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R   I+ Q
Sbjct: 61  E-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLSMEIHRSGRIYKQ 119

Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
            ++ G+P + L   +      GT+I F P  + F +   +D   L K  +  A+L+  V+
Sbjct: 120 SYTHGVPDAALTDVDDT-EITGTKIQFWPSEETFTNVT-YDYKILAKRIRELAFLNSGVR 177

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
              + +++          E FY+ GG+  +++   +N+S+I   I      +       V
Sbjct: 178 IVLTDERD-------ELTETFYYEGGITAFVEHLNKNKSVIHDNIIKIDGMRDDV---NV 227

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359
           E ++ W +     I  + N I   +GGTH +G R ALTR + +Y E      K  ++   
Sbjct: 228 ELSMQWNDSYQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNQYIESEGLAKKSKVTTSG 287

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD       +LSV + +P+F+ QTK KLVS + +  VE+ + + F  +L++NP +A  + 
Sbjct: 288 DDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRTIVESYVNEFFHDFLIENPNDAKLIA 347

Query: 420 EWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
             +I+ +  R   RK RE+ R+   +    LPGKLADC +     +ELF+VEGDSAGGSA
Sbjct: 348 NKMIDAARARDAARKARELTRRKGVLDIAGLPGKLADCQERDPAQSELFLVEGDSAGGSA 407

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537
           KQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++  L+ ALGC   R +Y  E LRY  
Sbjct: 408 KQGRDRRTQAILPLKGKILNVERARFDKMISSAEVGTLITALGCGIGRDEYDPEKLRYHH 467

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           +IIMTDADVDG+HI +LLLTFFY++M +LIE+ H+++  PPL++I +G +  Y  D+   
Sbjct: 468 IIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHVYIAQPPLYKIKKGKQERYVKDDAEM 527

Query: 598 QKILEEFKKHG 608
           ++ L E   + 
Sbjct: 528 ERYLTEVALNN 538



 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 7/105 (6%)

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           R+ +G +        +  + +       +    + R+KGLGEM   QL ET MD +KR L
Sbjct: 679 RVERGDRKE---SVSYFAEAVNWLLAEARRGQHVQRYKGLGEMNPDQLWETTMDKSKRRL 735

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           L+V+I+  +       ++ N LMG   + R +FI+  A  + ++ 
Sbjct: 736 LQVKIDDAIV----ADETFNTLMGDNVEPRREFIETHALQVSNLD 776


>gi|219681399|ref|YP_002467784.1| DNA gyrase subunit B [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|257471072|ref|ZP_05635071.1| DNA gyrase subunit B [Buchnera aphidicola str. LSR1 (Acyrthosiphon
           pisum)]
 gi|219624242|gb|ACL30397.1| DNA gyrase subunit B [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|311085760|gb|ADP65842.1| DNA gyrase subunit B [Buchnera aphidicola str. LL01 (Acyrthosiphon
           pisum)]
 gi|311086337|gb|ADP66418.1| DNA gyrase subunit B [Buchnera aphidicola str. TLW03 (Acyrthosiphon
           pisum)]
 gi|311086912|gb|ADP66992.1| DNA gyrase subunit B [Buchnera aphidicola str. JF99 (Acyrthosiphon
           pisum)]
          Length = 803

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 214/565 (37%), Positives = 343/565 (60%), Gaps = 18/565 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + YD+S+I+IL GL+ VR RPGMYIG TD+   LHH+  E++DN++DE ++GY   I V+
Sbjct: 3   NIYDSSNIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVFEIVDNSIDEALSGYCKEIIVT 62

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  ++V D+GRGIP + HP+  N S  E+I+T LH+GGKFDN++Y+ISGGLHGVGIS
Sbjct: 63  IHSDNSVSVKDDGRGIPTDIHPE-ENISAAEVIMTVLHSGGKFDNASYQISGGLHGVGIS 121

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS++L + + +    + Q +  G P +PL           T I F P  K F +  
Sbjct: 122 VVNALSEKLELIIDKNKKKYQQIYRHGKPENPLSIIGTTDTTG-TYIRFWPSYKTFTNNI 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L K  +  ++L+  +      ++   +         +++ GG+K +++     +
Sbjct: 181 KFQYEILSKRLRELSFLNSNIAIYLEDNRTSIKN-------CYHYKGGIKAFIKFLNAKK 233

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALT 339
           + I + IF  ++ K    +  +E A+ W       I  + N I   +GGTH +G R  +T
Sbjct: 234 TPIHTHIFYFRSTKD---QIELEIAMQWNNSHQENILCFTNNIPQKDGGTHLAGFRSGMT 290

Query: 340 RGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  + E      K   +II +D+      I+S+ I +P+F+ QTK KLVS +A+  +E
Sbjct: 291 RTLNLHIEREGYNKKNKTTIIGEDVREGLTAIISIKIPDPKFSSQTKDKLVSSEARSVIE 350

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
           + + +    YL++NP ++  +++ +I  ++ R   R+ RE   +K+ +    LPGKL+DC
Sbjct: 351 SLINENLIEYLLENPSDSKFIIQKIINAAKVREAARRAREINKKKSILDLGALPGKLSDC 410

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            +N    +E+++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  +  +K+  +Q++  L
Sbjct: 411 QENDPKFSEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKSKFDKMILSQEVASL 470

Query: 517 VQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           + ALGC   +++Y  + LRY  +IIMTDADVDGAHI +LLLTFFY+++ +LIE+ ++++ 
Sbjct: 471 ITALGCGIGKNEYNIDKLRYHYIIIMTDADVDGAHIRTLLLTFFYRQLPELIEKGYVYIA 530

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKI 600
            PPL+++ +G K  Y  ++E     
Sbjct: 531 QPPLYKLKKGRKEKYIKNDEEMNTY 555



 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 4/99 (4%)

Query: 587 KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646
           KS   +  +  +   +   K  K  + I R+KGLGEM   QL  T M+   R +L+V I 
Sbjct: 708 KSGSTYKIDSIKNTWKWLIKQSKRGLFIQRYKGLGEMNPEQLWNTTMNPETRNMLQVTIK 767

Query: 647 KDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             +       +  N LMG   + R +FI+  A   +++ 
Sbjct: 768 DAV----SANNLFNTLMGEAVEPRRQFIENNALKAENID 802


>gi|15616640|ref|NP_239852.1| DNA gyrase subunit B [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|11132907|sp|P57126|GYRB_BUCAI RecName: Full=DNA gyrase subunit B
 gi|25292797|pir||B84931 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain B
           [imported] - Buchnera sp. (strain APS)
 gi|10038703|dbj|BAB12738.1| DNA gyrase subunit B [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
          Length = 803

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 215/565 (38%), Positives = 343/565 (60%), Gaps = 18/565 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + YD+S+I+IL GL+ VR RPGMYIG TD+   LHH+  E++DN++DE ++GY   I V+
Sbjct: 3   NIYDSSNIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVFEIVDNSIDEALSGYCKEIIVT 62

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  ++V D+GRGIP + HP+  N S  E+ILT LH+GGKFDN++Y+ISGGLHGVGIS
Sbjct: 63  IHSDNSVSVKDDGRGIPTDIHPE-ENISAAEVILTVLHSGGKFDNASYQISGGLHGVGIS 121

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS++L + + +    + Q +  G P +PL           T I F P  K F +  
Sbjct: 122 VVNALSEKLELIIDKNKKKYQQIYRHGKPENPLSIIGTTDTTG-TYIRFWPSYKTFTNNI 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L K  +  ++L+  +      ++   +         +++ GG+K +++     +
Sbjct: 181 KFQYEILSKRLRELSFLNSNIAIYLEDNRTSIKN-------CYHYKGGIKAFIKFLNAKK 233

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALT 339
           + I + IF  ++ K    +  +E A+ W       I  + N I   +GGTH +G R  +T
Sbjct: 234 TPIHTHIFYFRSTKD---QIELEIAMQWNNSHQENILCFTNNIPQKDGGTHLAGFRSGMT 290

Query: 340 RGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  + E      K   +II +D+      I+S+ I +P+F+ QTK KLVS +A+  +E
Sbjct: 291 RTLNLHIEREGYNKKNKTTIIGEDVREGLTAIISIKIPDPKFSSQTKDKLVSSEARSVIE 350

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
           + + +    YL++NP ++  +++ +I  ++ R   R+ RE   +K+ +    LPGKL+DC
Sbjct: 351 SLINENLIEYLLENPSDSKFIIQKIINAAKVREAARRAREINKKKSILDLGALPGKLSDC 410

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            +N    +E+++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  +  +K+  +Q++  L
Sbjct: 411 QENDPKFSEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKSKFDKMILSQEVASL 470

Query: 517 VQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           + ALGC   +++Y  + LRY  +IIMTDADVDGAHI +LLLTFFY+++ +LIE+ ++++ 
Sbjct: 471 ITALGCGIGKNEYNIDKLRYHYIIIMTDADVDGAHIRTLLLTFFYRQLPELIEKGYVYIA 530

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKI 600
            PPL+++ +G K  Y  ++E     
Sbjct: 531 QPPLYKLKKGRKEKYIKNDEEMNTY 555



 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 4/99 (4%)

Query: 587 KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646
           KS   +  +  +   +   K  K  + I R+KGLGEM   QL  T M+   R +L+V I 
Sbjct: 708 KSGSTYKIDSIKNTWKWLIKQSKRGLFIQRYKGLGEMNPEQLWNTTMNPETRNMLQVTIK 767

Query: 647 KDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             +       +  N LMG   + R +FI+  A   +++ 
Sbjct: 768 DAV----SANNLFNTLMGEAVEPRRQFIENNALKAENID 802


>gi|72388569|gb|AAZ67928.1| DNA gyrase subunit B [Psychrobacter jeotgali]
          Length = 754

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 209/547 (38%), Positives = 329/547 (60%), Gaps = 19/547 (3%)

Query: 61  RPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119
           RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I++ +  +  ++V DNGRG+PV+
Sbjct: 1   RPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQIDIVIHEDESVSVSDNGRGVPVD 60

Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179
            HP+    S  ++I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+   
Sbjct: 61  IHPE-EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYH 119

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
           + Q ++ G+P S +++ E   +K GT+I F P   +F     F+   L K  +  ++L+ 
Sbjct: 120 YQQTYTDGVPDSEIQQMEAT-DKTGTQIRFYPSTDVFTGTV-FEYDILAKRLRELSFLNS 177

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            V+   + ++       I ++ EF   GGL  ++      +  ++        +  G   
Sbjct: 178 GVRIVLTDER-------IDKRHEFEHKGGLSEFVSYINAGKDGVNEVFHFTSEQDDGI-- 228

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
            +VE A+ W +    ++  + N I   +GGTH SG R ALTR +  Y +      K  + 
Sbjct: 229 -SVEVALQWTDTYNEKVLCFTNNIPQRDGGTHLSGFRSALTRVLNSYMDRENLFKKEKVV 287

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
              DD       I+SV + +P+F+ QTK KLVS + +  VE+A+ D F  YL++NP    
Sbjct: 288 ATGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVRSAVESAMHDRFSDYLLENPTAGK 347

Query: 417 KLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            +   +I+ +  R   RK      RKT +    LPGKLADC +     +EL+IVEGDSAG
Sbjct: 348 AVANKIIDAARARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPALSELYIVEGDSAG 407

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLR 534
           GSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ +L+ ALGC     +Y  + +R
Sbjct: 408 GSAKQGRSRKTQAILPLKGKILNVERARFDKMLSSAEVGNLITALGCGIGPDEYNPDKVR 467

Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDE 594
           Y K+IIMTDADVDG+HI +LLLTFF+++  +LIE+ ++++  PPL+++ +G + +Y  D+
Sbjct: 468 YHKIIIMTDADVDGSHIRTLLLTFFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDD 527

Query: 595 EHKQKIL 601
           E  +  L
Sbjct: 528 EALKAYL 534


>gi|288561864|gb|ADC53568.1| DNA gyrase subunit beta [Pseudomonas syringae pv. syringae]
          Length = 722

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 214/546 (39%), Positives = 324/546 (59%), Gaps = 19/546 (3%)

Query: 62  PGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           PGMYIG TD+   LHH+  EV+DN++DE +AG+ + I + +  +  +TV DNGRGIPV+ 
Sbjct: 1   PGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDISIIIHPDESITVRDNGRGIPVDV 60

Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
           H K    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+ L +TV R   I+
Sbjct: 61  H-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSELLLLTVRRSGKIW 119

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
            Q +  G+P  P++   +  +  GT+I F+P  + F +   F    L K  +  ++L+  
Sbjct: 120 EQTYVHGVPQEPMKIVGE-SDSTGTQIHFKPSAETFKNIH-FSWDILAKRIRELSFLNSG 177

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
           V      ++   E       E F + GGL+ +++    N++ ++           G    
Sbjct: 178 VGIVLKDERSGKE-------ELFKYEGGLRAFVEYLNTNKTPVNEVFHFNIQRDDGI--- 227

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISI 357
            VE A+ W +     +    N I   +GGTH  G R ALTR +  Y E      K  ++ 
Sbjct: 228 GVEIALQWNDSFNENLLCSTNNIPQRDGGTHLVGFRSALTRNLNNYIEQEGLAKKHKVAT 287

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD       I+SV + +P+F+ QTK KLVS + +  VE  +   F  +L++NP EA  
Sbjct: 288 TGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKA 347

Query: 418 LLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++  +I+ +  R   RK R    RK A+    LPGKLADC +     +EL++VEGDSAGG
Sbjct: 348 VVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGG 407

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRY 535
           SAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY
Sbjct: 408 SAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGREEYNIDKLRY 467

Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEE 595
             +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++++  PPL+++ +G +  Y  D+E
Sbjct: 468 HNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYKVKKGKQEQYIKDDE 527

Query: 596 HKQKIL 601
             ++ +
Sbjct: 528 AMEEYM 533



 Score = 44.0 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEM 623
              ++ L         +  I R+KGLGEM
Sbjct: 694 NEFKEALAWLMAESTKRHTIQRYKGLGEM 722


>gi|219681955|ref|YP_002468339.1| DNA gyrase subunit B [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|219621688|gb|ACL29844.1| DNA gyrase subunit B [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
          Length = 803

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 213/565 (37%), Positives = 342/565 (60%), Gaps = 18/565 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + YD+S+I+IL GL+ VR RPGMYIG TD+   LHH+  E++DN++DE ++GY   I V+
Sbjct: 3   NIYDSSNIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVFEIVDNSIDEALSGYCKEIIVT 62

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  ++V D+GRGIP + HP+  N S  E+I+T LH+GGKFDN++Y+ISGGLHGVGIS
Sbjct: 63  IHSDNSVSVKDDGRGIPTDIHPE-ENISAAEVIMTVLHSGGKFDNASYQISGGLHGVGIS 121

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS++L + + +    + Q +  G P + L           T I F P  K F +  
Sbjct: 122 VVNALSEKLELIIDKNKKKYQQIYRHGKPENSLSIIGTTDTTG-TYIRFWPSYKTFTNNI 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L K  +  ++L+  +      ++   +         +++ GG+K +++     +
Sbjct: 181 KFQYEILSKRLRELSFLNSNIAIYLEDNRTSIKN-------CYHYKGGIKAFIKFLNAKK 233

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALT 339
           + I + IF  ++ K    +  +E A+ W       I  + N I   +GGTH +G R  +T
Sbjct: 234 TPIHTHIFYFRSTKD---QIELEIAMQWNNSHQENILCFTNNIPQKDGGTHLAGFRSGMT 290

Query: 340 RGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  + E      K   +II +D+      I+S+ I +P+F+ QTK KLVS +A+  +E
Sbjct: 291 RTLNLHIEREGYNKKNKTTIIGEDVREGLTAIISIKIPDPKFSSQTKDKLVSSEARSVIE 350

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
           + + +    YL++NP ++  +++ +I  ++ R   R+ RE   +K+ +    LPGKL+DC
Sbjct: 351 SLINENLIEYLLENPSDSKFIIQKIINAAKVREAARRAREINKKKSILDLGALPGKLSDC 410

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            +N    +E+++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  +  +K+  +Q++  L
Sbjct: 411 QENDPKFSEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKSKFDKMILSQEVASL 470

Query: 517 VQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           + ALGC   +++Y  + LRY  +IIMTDADVDGAHI +LLLTFFY+++ +LIE+ ++++ 
Sbjct: 471 ITALGCGIGKNEYNIDKLRYHYIIIMTDADVDGAHIRTLLLTFFYRQLPELIEKGYVYIA 530

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKI 600
            PPL+++ +G K  Y  ++E     
Sbjct: 531 QPPLYKLKKGRKEKYIKNDEEMNTY 555



 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 4/99 (4%)

Query: 587 KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646
           KS   +  +  +   +   K  K  + I R+KGLGEM   QL  T M+   R +L+V I 
Sbjct: 708 KSGSTYKIDSIKNTWKWLIKQSKRGLFIQRYKGLGEMNPEQLWNTTMNPETRNMLQVTIK 767

Query: 647 KDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             +       +  N LMG   + R +FI+  A   +++ 
Sbjct: 768 DAV----SANNLFNTLMGEAVEPRRQFIENNALKAENID 802


>gi|260771050|ref|ZP_05879978.1| DNA gyrase subunit B [Vibrio furnissii CIP 102972]
 gi|260613939|gb|EEX39130.1| DNA gyrase subunit B [Vibrio furnissii CIP 102972]
          Length = 781

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 213/543 (39%), Positives = 329/543 (60%), Gaps = 17/543 (3%)

Query: 64  MYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122
           MYIG TD+   LHH+  EV+DN++DE +AGY   I V++  +  ++V D+GRGIP E HP
Sbjct: 1   MYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIIVTIHEDNSVSVSDDGRGIPTELHP 60

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
           +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   + +Q
Sbjct: 61  E-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGKVHTQ 119

Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
            +  G+P +PL       ++ GT + F P  + F +   F    L K  +  ++L+  V 
Sbjct: 120 TYRHGVPEAPLAVVGDT-DRSGTMVRFWPSAETFTNI-EFHYEILAKRLRELSFLNSGVS 177

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
                ++E        +++ F + GG++ ++     N++ I  ++F   +E++     +V
Sbjct: 178 IKLVDEREDN------KQDHFMYEGGIQAFVNHLNRNKTPIHEKVFHFNSERED--GISV 229

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359
           E A+ W +     I  + N I   +GGTH +G R ALTR +  Y +      K   +   
Sbjct: 230 EVAMQWNDGFQESIYCFTNNIPQRDGGTHLAGFRAALTRTLNTYMDKEGYSKKAKTATSG 289

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD       ++SV + +P+F+ QTK KLVS + +  VE+A+ +  + +L +NP EA  + 
Sbjct: 290 DDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLNDFLAENPSEAKIVC 349

Query: 420 EWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
             +I+ +  R   RK R    RK A+    LPGKLADC +     +EL+IVEGDSAGGSA
Sbjct: 350 SKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSA 409

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537
           KQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  
Sbjct: 410 KQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHN 469

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++  PPL+++ +G +  Y  DEE  
Sbjct: 470 IIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVKKGKQEQYIKDEEAM 529

Query: 598 QKI 600
            + 
Sbjct: 530 NQY 532



 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G ++            L+   K  +  + + R+KGLGEM   QL ET MD   R ++
Sbjct: 684 IKRGERTQ---PVASFAAALDWLIKESRRGLSVQRYKGLGEMNPDQLWETTMDPETRRMM 740

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I+  +       +    LMG + + R  FI+  A  + ++ 
Sbjct: 741 QVTIDDAVG----ADELFTTLMGDQVEPRRAFIENNALKVANLD 780


>gi|72388561|gb|AAZ67924.1| DNA gyrase subunit B [Psychrobacter pacificensis]
          Length = 750

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 209/547 (38%), Positives = 333/547 (60%), Gaps = 19/547 (3%)

Query: 61  RPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119
           RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I++ +  +  ++V+DNGRG+PV+
Sbjct: 1   RPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQIDIIIHEDESVSVMDNGRGVPVD 60

Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179
            HP+    S  ++I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+   
Sbjct: 61  IHPE-EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYH 119

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
           + Q ++ G+P + +++ E   ++ GT+I F P   +F     F+   L K  +  ++L+ 
Sbjct: 120 YRQTYTDGVPDADIQQMEAT-DQTGTQIRFYPSSDVFTGTV-FEYDILAKRLRELSFLNS 177

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            V+   + ++       I ++ EF   GGL  ++      +  I+        +  G   
Sbjct: 178 GVRIVLTDER-------IDKRREFEHKGGLLEFVSYINAGKDGINEVFHFTSQQDDGI-- 228

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
            +VE A+ W +    ++  + N I   +GGTH SG R ALTRG+  Y +      K  ++
Sbjct: 229 -SVEVALQWTDTYNEKVLCFTNNIPQKDGGTHLSGFRSALTRGLNSYMDRENLFKKEKVA 287

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
              DD       I+SV + +P+F+ QTK KLVS + +  VE+A+ D F+ YL++NP    
Sbjct: 288 ATGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDYLLENPSAGK 347

Query: 417 KLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            +   ++E +  R   RK      RKT +    LPGKLADC +     +EL+IVEGDSAG
Sbjct: 348 AIANKIMEAARARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPVLSELYIVEGDSAG 407

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLR 534
           GSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ +L+ ALGC     +Y  + +R
Sbjct: 408 GSAKQGRSRKTQAILPLKGKILNVERARFDKMLSSAEVGNLITALGCGIGPDEYNPDKVR 467

Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDE 594
           Y K+IIMTDADVDG+HI +LLLTFF+++  +LIE+ ++++  PPL+++ +G + +Y  D+
Sbjct: 468 YHKIIIMTDADVDGSHIRTLLLTFFFRQTPELIERGYVYIAQPPLYKVKKGRQELYLKDD 527

Query: 595 EHKQKIL 601
           E  +  L
Sbjct: 528 EALKAYL 534


>gi|81251102|gb|ABB69898.1| DNA gyrase subunit B [Nitrosomonas sp. IWT310]
          Length = 554

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 214/565 (37%), Positives = 336/565 (59%), Gaps = 19/565 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNA 85
                      +S+  +YD++SI+IL+GL+ VR RPGMYIG T D   LHH+  EV+DNA
Sbjct: 2   NTSQPESTKNTESSQRDYDSNSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVVDNA 61

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFP-NKSTLEIILTTLHAGGKFD 144
           +DE +AGY + I V +  +  ++V DNGRGIP +        +S  EI++T LHAGGKFD
Sbjct: 62  IDEALAGYCDEISVIIHADNSISVQDNGRGIPTDIKQDDEQKRSAAEIVMTELHAGGKFD 121

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+ L +T+ R+  +   +F  G+ ++PL    +  +K G
Sbjct: 122 DNSYKVSGGLHGVGVSVVNALSEWLRLTIYRKGNVHQIEFRDGVAVAPLAVTGQT-DKHG 180

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F    ++      +      +  +  ++L+  ++      ++  E       E F 
Sbjct: 181 TEVHFLAS-QVIFGNVTYHYDIFARRLRELSFLNYGIRIRLVDRRDNRE-------ETFA 232

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           F GG++ +++     ++++   IF  K  K      TVE A+ W +    ++  + N I 
Sbjct: 233 FSGGIRNFVEYINRTKTVLHPSIFYAKGMKDDI---TVEIAMQWNDSYAEQVLCFTNNIP 289

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +GLR A+TR +  Y E  +   K  +    DD+      +LS+ + EP+F+ 
Sbjct: 290 QKDGGTHLTGLRAAMTRTLNSYIEKNELAKKAKVDTTGDDMREGMTCVLSIKLFEPKFSS 349

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK KLVS + +  VE  +      ++++NP EA  +   +IE +  R   RK RE+ R+
Sbjct: 350 QTKEKLVSSEVRPVVEEVVSHKLSEFMLENPNEAKIICNKIIEAARAREAARKARELTRR 409

Query: 442 TA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
              +  + LPGKLADC +      EL++VEGDSAGGSAKQ R+R  QA++PL+GKILNV 
Sbjct: 410 KGVLDSMGLPGKLADCQEKDPKLCELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVE 469

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
            +  +K+ ++Q+I+ L+ ALG    + +Y  + LRY ++IIMTDADVDG+HI +LLLTFF
Sbjct: 470 KSRFDKLISSQEIVSLITALGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFF 529

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQ 584
           Y++M +LIE+ H+++  PPL++I  
Sbjct: 530 YRQMPELIERGHIYIAQPPLYKIKH 554


>gi|94957784|gb|ABF47142.1| DNA gyrase subunit B [Mesoplasma chauliocola]
          Length = 553

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 228/566 (40%), Positives = 324/566 (57%), Gaps = 17/566 (3%)

Query: 67  GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           G T +  LHHL  E++DN++DE +AG+AN I +++   G + V DNGRGIPV        
Sbjct: 1   GSTSKAGLHHLVWEIMDNSVDEAMAGFANKIILTITKEGEIIVQDNGRGIPVGIQ-TDSG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           KS LE++ T LHAGGKFD+ +Y+ISGGLHGVG SVVNALS  + V V R+  I  Q FS 
Sbjct: 60  KSALELVFTQLHAGGKFDSDSYKISGGLHGVGASVVNALSLYVDVEVKREGKIHHQLFSG 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G       K     ++ GT + F+PDP+IF +   FD   +    +  +YL+  +    +
Sbjct: 120 GGTQQSEIKIIGETSETGTTVRFKPDPEIFLEGTEFDYETIRNKVKQLSYLNKGLVIELN 179

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +       I +  E++FP G+  Y++ K E ++ I+  IF             VE A+
Sbjct: 180 DLR-------IDKHVEYHFPNGILDYVKEKNETKAKINPSIFYV---DDKHEDIEVEVAL 229

Query: 307 AWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLM 363
            +  E  E   ++ N I T EGGTHE GLR +L R I +YAE   T NK A     DD+ 
Sbjct: 230 QYNAEYQENLITFVNNINTHEGGTHEDGLRQSLVRVINRYAEKVATGNKPAAKYSWDDIK 289

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
              V I+S+   +P++ GQTKTKL + DA+R V+  + D F+ +L+++P +A  +L+   
Sbjct: 290 EGMVCIVSIRHTDPQYEGQTKTKLANPDAKRAVDAVVGDAFEEFLLKSPEDAKAILDKNA 349

Query: 424 ERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
              + R+  ++ RE   RK+A+    LPGKLADC        EL++VEGDSAGGSAK  R
Sbjct: 350 NAQKARIAAQRAREETRRKSALDTFSLPGKLADCESKDPEIAELYLVEGDSAGGSAKTGR 409

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           NR  QA+LPLRGK+LNV      +   N +I  +V A+G   +       LRY K++IMT
Sbjct: 410 NRRFQAILPLRGKVLNVERVAEVRAFANNEIKSIVTAIGTGIKEDIDLSKLRYGKIVIMT 469

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILE 602
           DADVDGAHI +LLLTFFY+ M  L+   H+++  PPL++I  G K  YA+ +   +++  
Sbjct: 470 DADVDGAHIRTLLLTFFYRYMKQLVVDGHVYIAQPPLYKIEAGKKVAYAYSDAELEELKA 529

Query: 603 EFKKHGKGKIEISRFKGLGEMLASQL 628
                   +  I R+KGLGEM   QL
Sbjct: 530 --GDFKDTRFTIQRYKGLGEMDPIQL 553


>gi|319941584|ref|ZP_08015910.1| DNA topoisomerase [Sutterella wadsworthensis 3_1_45B]
 gi|319804954|gb|EFW01796.1| DNA topoisomerase [Sutterella wadsworthensis 3_1_45B]
          Length = 655

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 252/670 (37%), Positives = 357/670 (53%), Gaps = 40/670 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  + Y   +IR+L+GLEPV+ RPGMY   T      H+  EVIDNA DEV+AGY   I 
Sbjct: 2   AKKEEYGVEAIRVLKGLEPVKQRPGMY---TLTDNPLHIIQEVIDNASDEVLAGYGKRIS 58

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN----STYEISGGL 154
           V +  +G +TV D+GRGIP   HP+  +   LEI+ T LHAGGKF        Y  +GGL
Sbjct: 59  VEVAADGSVTVEDDGRGIPTGMHPE-EHAPVLEIVFTRLHAGGKFAKADGSGPYTFAGGL 117

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV--RNKRGTRITFRPD 212
           HGVG+SV NALS  L VTV R     +  F  G    PLE K+    +++ GTR+T  PD
Sbjct: 118 HGVGVSVTNALSKHLVVTVWRDGQEATMGFRDGFVSEPLEIKKSSRPKSRTGTRVTVWPD 177

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           PK F          L+++ +SKA L    +  +              +  + + GGLK Y
Sbjct: 178 PKYFDSPV-IPEPALVRLLRSKAVLLPGCEVDYVNK-------MTGTEAHWKYSGGLKEY 229

Query: 273 LQTKLENRSLISSEIFTGKTEKKGT---HRGTVEWAIAWCEENP-EITSYCNTILTDEGG 328
           L ++++  SLI     +G  ++            W + W  E P    SY N I T +GG
Sbjct: 230 LLSEIKGESLIEPFEASGFADEDSESFSPGEGASWVVVWTAEGPLTRESYVNLIPTPQGG 289

Query: 329 THESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           THE+GL+  L + ++ + +      + + I+++D+      +LS    +P+F GQTK KL
Sbjct: 290 THEAGLKDGLFQAVRAFMDAHGLQPKGVKILAEDVFSRVNFVLSTKSLDPQFQGQTKEKL 349

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL 447
            S DA + V   +R  F+ +L  +  E  KL+E +I  S+ + R+R+  +  R+ A    
Sbjct: 350 TSRDAVKLVGGFVRPQFEFWLNDHADEGKKLVEHII--SQAQARQRQAAKYERRRASTVA 407

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKL DC  +     ELFIVEGDSAGGSAKQ R++  QAVLPLRGKILN       ++
Sbjct: 408 VLPGKLTDCESSDITRNELFIVEGDSAGGSAKQGRDKEFQAVLPLRGKILNTWEVEGGEL 467

Query: 508 RNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
             +  I D+  A+G     +  E D   LRY K+ I++DADVDG+HI  LLLT F++   
Sbjct: 468 FRSDTIHDIALAIGVDPHHRDGEPDLKGLRYGKICILSDADVDGSHIQVLLLTLFFKHFP 527

Query: 565 DLIEQKHLFLISPPLFRI---TQGTK---SVYAHDEEHKQKILEEFKKHG--KGKIEISR 616
            LIE  H+++  PPLFR+    +G K    +Y  DE    + LE  KK G  + ++ ISR
Sbjct: 528 KLIELGHVYVAMPPLFRVDAPKKGRKPDRKIYCLDERELSRTLESLKKEGFTEEQLSISR 587

Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQ 675
           FKGLGEM A QL ET +  + R LL V       S  DT+  +  LMG +    R  +++
Sbjct: 588 FKGLGEMKAEQLAETTLAPDTRKLLPVAF--GSISEADTRTVMQTLMGERQVTGRRLWME 645

Query: 676 ERASFIDDVG 685
                 + + 
Sbjct: 646 AYGDRAE-LD 654


>gi|81251098|gb|ABB69895.1| DNA gyrase subunit B [Nitrosomonas sp. CNS332]
          Length = 554

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 217/565 (38%), Positives = 338/565 (59%), Gaps = 19/565 (3%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNA 85
                      +S+  +YD++SI+IL+GL+ VR RPGMYIG T D   LHH+  EV+DNA
Sbjct: 2   NTSQPESTKNTESSQRDYDSNSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVVDNA 61

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFP-NKSTLEIILTTLHAGGKFD 144
           +DE +AGY + I V +  +  ++V DNGRGIP +        +S  EI++T LHAGGKFD
Sbjct: 62  IDEALAGYCDEISVIIHADNSISVQDNGRGIPTDIKQDDEQKRSAAEIVMTELHAGGKFD 121

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+ L +T+ R+  +   +F  G+ ++PL    +  +K G
Sbjct: 122 DNSYKVSGGLHGVGVSVVNALSEWLRLTIYRKGNVHQIEFRDGVAVAPLAVTGQT-DKHG 180

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F     IFG+   +      +  +  ++L+  ++      ++  E       E F 
Sbjct: 181 TEVHFLASQAIFGN-VTYHYDIFARRLRELSFLNYGIRIRLVDQRDNRE-------ETFA 232

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           F GG++ +++     ++++   IF  K  K      TVE A+ W +    ++  + N I 
Sbjct: 233 FSGGIRNFVEYINRTKTVLHPSIFYAKGMKDDI---TVEIAMQWNDSYAEQVLCFTNNIP 289

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +GLR A+TR +  Y E  +   K  +    DD+      +LS+ + EP+F+ 
Sbjct: 290 QKDGGTHLTGLRAAMTRTLNSYIEKNELAKKAKVDTTGDDMREGMTCVLSIKLFEPKFSS 349

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK KLVS + +  VE  +      ++++NP EA  +   +IE +  R   RK RE+ R+
Sbjct: 350 QTKEKLVSSEVRPVVEEVVSHKLSEFMLENPNEAKIICNKIIEAARAREAARKARELTRR 409

Query: 442 TA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
              +  + LPGKLADC +      EL++VEGDSAGGSAKQ R+R  QA++PL+GKILNV 
Sbjct: 410 KGVLDSMGLPGKLADCQEKDPKLCELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVE 469

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
            +  +K+ ++Q+I+ L+ ALG    + +Y  + LRY ++IIMTDADVDG+HI +LLLTFF
Sbjct: 470 KSRFDKLISSQEIVSLITALGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFF 529

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQ 584
           Y++M +LIE+ H+++  PPL++I  
Sbjct: 530 YRQMPELIERGHIYIAQPPLYKIKH 554


>gi|152980048|ref|YP_001351693.1| DNA gyrase subunit B [Janthinobacterium sp. Marseille]
 gi|151280125|gb|ABR88535.1| DNA gyrase subunit B [Janthinobacterium sp. Marseille]
          Length = 832

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 225/588 (38%), Positives = 330/588 (56%), Gaps = 32/588 (5%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVI 90
               A Q  S  Y ASSI+ILEGLE VR RPGMYIG T D   LHH   EV+DN++DE +
Sbjct: 5   PNDNAPQPQSAQYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHCVFEVLDNSIDESL 64

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNST 147
           AG+   I V++  +  +++ DNGRGIP          P +S  EI++T LHAGGKFD ++
Sbjct: 65  AGHCTEIHVTIHSDNSISITDNGRGIPTGIKWDDKHEPKRSAAEIVMTELHAGGKFDQNS 124

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEK 195
           Y++SGGLHGVG+S VN LS  L +T+ R       +F RG+P            +SP++ 
Sbjct: 125 YKVSGGLHGVGVSCVNGLSKLLKLTIRRDGKKHEMEFVRGVPQNREVETIDGMVVSPIKV 184

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
                +KRGT + F  D +IF +   F    L K  +  ++L+  V    S  +      
Sbjct: 185 VGDT-DKRGTEVHFWADEEIFTNV-EFHYDILAKRIRELSFLNNGVHIKLSDQR------ 236

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK--KGTHRGTVEWAIAWCEEN- 312
              ++E+F F GG + +++   + +S++   IF    E+        TV+ ++ W +   
Sbjct: 237 -TGKEEDFAFEGGTRGFVEYINKAKSVLHPTIFQATGERLSDQGTNITVDVSMQWNDAYN 295

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
            ++  + N I   +GGTH +GLR A+TR I KY +  +   K  + I  DD+      +L
Sbjct: 296 EQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIDEHEFAKKAKVEISGDDMREGLTCVL 355

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV + EP+F+ QTK KLVS + +  VE  +      YL + P +A  +   ++E +  R 
Sbjct: 356 SVKVPEPKFSSQTKDKLVSSEVRGPVEEIVAKTLADYLQEKPNDAKIICGKIVEAARARE 415

Query: 431 RRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK R++ R+   +  L L  KLADC +      EL++VEGDSAGGSAKQ R+R  QA+
Sbjct: 416 AARKARDLTRRKGVMDGLGLSAKLADCQEKDPALCELYVVEGDSAGGSAKQGRDRKFQAI 475

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDG 548
           LPLRGK+LNV  A  EK+  ++QI  L+  LG      ++  E LRY ++IIMTDADVDG
Sbjct: 476 LPLRGKVLNVEKARFEKMLASEQITTLIATLGTSIGADEFNIEKLRYHRIIIMTDADVDG 535

Query: 549 AHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEH 596
           AHI +LLLT  Y++M  L+E+ H+++  PPL+++  G    Y  D+  
Sbjct: 536 AHIRTLLLTLLYRQMPQLVERGHVYIAQPPLYKVKHGKDERYLKDDVE 583



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 6/100 (6%)

Query: 586 TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645
              V A  +    + +   +   +  +   R+KGLGEM   QL ET MD   R LL+V+I
Sbjct: 738 KAKVSAISD--FHQAMNWLRSEAERNVGKQRYKGLGEMNPEQLWETTMDPAVRRLLKVQI 795

Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              +            LMG   + R  FI+  A    ++ 
Sbjct: 796 EDAI----AADQIFTTLMGDDVEPRRAFIELNALSAGNID 831


>gi|34101314|gb|AAQ57683.1| DNA gyrase subunit B [Chromobacterium violaceum ATCC 12472]
          Length = 771

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 212/547 (38%), Positives = 325/547 (59%), Gaps = 19/547 (3%)

Query: 64  MYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122
           MYIG T D   LHH+  EV+DNA+DE +AG+A+ I+V+++ +  ++V DNGRGIP + HP
Sbjct: 1   MYIGDTQDGTGLHHMVFEVLDNAIDEALAGHADTIKVTINPDNSVSVEDNGRGIPTDIHP 60

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
           +   +S  E+I+T LHAGGKFD+++Y+ISGGLHGVG+SVVNALSD L + + R   +   
Sbjct: 61  E-EGRSAAEVIMTILHAGGKFDSNSYKISGGLHGVGVSVVNALSDWLKLKIWRDGKVHEM 119

Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
           +F RG  ++PL         RGT +TF    + FG    +    L K  +  ++L+  V 
Sbjct: 120 EFRRGDAVAPLTVTGHTS-HRGTEVTFFASVETFG-HIEYHFDILAKRIRELSFLNQGVG 177

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
                 +   E       E F F GG+  +++    N++++  ++F G  EK G    +V
Sbjct: 178 IQLIDKRSGKE-------ENFAFSGGVAGFVEYMNRNKTVLHPKVFYGIGEKDG---MSV 227

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359
           E A+ W +     +  + N I   +GGTH + LR  +TR + ++ E ++   K  +    
Sbjct: 228 EVAMQWNDSYQESVQCFTNNIPQRDGGTHMTALRQVMTRTLNQFIEESEAAKKAKVDTTG 287

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD+      +LSV + +P+F+ QTK KLVS +    V   + +    YL++NP +A  + 
Sbjct: 288 DDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVNEVISEALKTYLLENPNDAKIIC 347

Query: 420 EWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
             ++E +  R   RK RE+ R+   +  L LPGKLADC +      EL++VEGDSAGGSA
Sbjct: 348 GKIVEAARAREAARKAREITRRKGVMDGLGLPGKLADCQEKDPSLCELYLVEGDSAGGSA 407

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537
           KQ R+R  QA+LPL+GKILNV  A  +K+  +Q++  L+ A+GC   + +Y  + LRY +
Sbjct: 408 KQGRDRKFQAILPLKGKILNVERARFDKMLQSQEVATLITAMGCGIGKDEYNPDKLRYHR 467

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           +IIMTDADVDGAHI +LLLTFFY++M +L+E+ H+++  PPL++   G +  Y  D+   
Sbjct: 468 IIIMTDADVDGAHIRTLLLTFFYRQMTELVERGHIYIAQPPLYKAKHGKQERYLKDDGEL 527

Query: 598 QKILEEF 604
            + L + 
Sbjct: 528 NQYLLQL 534



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 4/100 (4%)

Query: 586 TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645
            +           + L+      K  + I R+KGLGEM   QL ET MD   R LL+V I
Sbjct: 675 KRGETVKPVAEFGEALDWLLAEVKKGMNIQRYKGLGEMNPEQLWETTMDPTVRRLLKVRI 734

Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              +       D    LMG + + R +FI+  A    ++ 
Sbjct: 735 EDVMG----ADDVFTTLMGDEVEPRRQFIEGNALIARNID 770


>gi|149925374|ref|ZP_01913638.1| DNA gyrase, B subunit [Limnobacter sp. MED105]
 gi|149825491|gb|EDM84699.1| DNA gyrase, B subunit [Limnobacter sp. MED105]
          Length = 841

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 221/603 (36%), Positives = 327/603 (54%), Gaps = 34/603 (5%)

Query: 26  SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDN 84
           + E  +      Q  + +Y   SI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN
Sbjct: 2   TSETQNGGDLPVQGNNADYGEGSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDN 61

Query: 85  AMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGG 141
           ++DE +AG+ + I V++  +  ++V DNGRGIP          P +S  EI LT LHAGG
Sbjct: 62  SIDEALAGHCDDIVVTIHADNSISVTDNGRGIPTGVKMDDKHEPKRSASEIALTELHAGG 121

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--------- 192
           KF+ ++Y++SGGLHGVG+S VNALS  L + V R+  +   +F+RG   +          
Sbjct: 122 KFNQNSYKVSGGLHGVGVSCVNALSSWLRLIVRREGKVHQLEFARGFVQNRIIEQVDGVD 181

Query: 193 --LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
               K     +KRGT + F PD +IF     F    L K  +  ++L+  V+     ++ 
Sbjct: 182 VSPMKIVGTTDKRGTEVHFLPDTQIFQQNNDFHYEILAKRLRELSFLNNGVRIRLKDERT 241

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT-------VE 303
             E         F   GG+  +++    N+ ++    F    E+     G        VE
Sbjct: 242 GKEDD-------FAGSGGVMGFVEFINANKKILHPNTFYAAGERPAETYGGIPGTSIGVE 294

Query: 304 WAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISD 360
            ++ W +  N  +  + N I   +GGTH +GLR A+TR I KY E+ +   K+ + +  D
Sbjct: 295 VSMQWNDGFNESVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIEVNEIAKKQKVEVTGD 354

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT-KLL 419
           D+      +LSV + EP+F+ QTK KLVS + +  VE+ +      +L + P +A    L
Sbjct: 355 DMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVAKVLGEFLEERPNDAKLICL 414

Query: 420 EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           + V         R+ +    RK  +  + LPGKLADC +      E++IVEGDSAGGSAK
Sbjct: 415 KIVEAARAREAARKARDMTRRKGVLDGVGLPGKLADCQERDPAKCEIYIVEGDSAGGSAK 474

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKV 538
           Q R+R  QA+LPLRGK+LNV  A  +K+  ++QI  L+ ALG            LRY ++
Sbjct: 475 QGRDRKFQAILPLRGKVLNVEKARFDKLLTSEQITTLITALGTSIGKDDFNLAKLRYHRI 534

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQ 598
           IIMTDADVDGAHI +LLLT  Y++M +L+E  H+++  PPL+++  G    Y  D++ + 
Sbjct: 535 IIMTDADVDGAHIRTLLLTLLYRQMPELVEHGHVYIAQPPLYKVKHGKDERYLKDDQEEA 594

Query: 599 KIL 601
           + +
Sbjct: 595 QYM 597



 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ +   ++  +  I   R+KGLGEM   QL ET MD   R LLRV+I   +       
Sbjct: 756 FREAMHWLREQAEKAITKQRYKGLGEMNPQQLWETTMDPTVRRLLRVQIEDAI----AAD 811

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG + + R  FI+  A    ++ 
Sbjct: 812 QIFTTLMGDEVEPRRAFIESNALKAGNID 840


>gi|116514952|ref|YP_802581.1| DNA gyrase subunit B [Buchnera aphidicola str. Cc (Cinara cedri)]
 gi|116256806|gb|ABJ90488.1| DNA gyrase subunit B [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 797

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 225/599 (37%), Positives = 343/599 (57%), Gaps = 34/599 (5%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           SD Y +S+I+IL+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ N I V
Sbjct: 2   SDLYTSSNIKILKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGFCNTINV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            +  +  +++ DNGRGIP++ HP+    S  E+I+T LHAGGKFD ++Y++SGGLHGVGI
Sbjct: 62  KIHSDNSVSISDNGRGIPIDIHPEA-GISAAEVIMTVLHAGGKFDENSYKVSGGLHGVGI 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R + I    F  G P   L    K + + GT+I F P+ KIF ++
Sbjct: 121 SVVNALSKKLKLYIYRNSKIRQIYF-HGNPKESLLCIGKTKKQ-GTKIRFWPNEKIFTNQ 178

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F +  L K  Q  ++L+  +    +  +            ++   GG+K +++    +
Sbjct: 179 NNFQSEILQKRLQELSFLNSNLLIKLTDMR-------NKIYFQYLNKGGIKNFIKFLNNS 231

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +             KK      V  A+ W      +I  + N I   +GG+H SG R AL
Sbjct: 232 K---IPIHNKIFIFKKKKKNIEVNIAMQWNSTFQEKILCFTNNIPQQDGGSHLSGFRAAL 288

Query: 339 TRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  +++   +  K  I+I  DD     + ++S+ +  P+F+ QTK KLVS + +  V
Sbjct: 289 TRTLNNFSDREKSNKKNKITITGDDTREGLIALISIKMFNPKFSSQTKEKLVSSEVKSVV 348

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLAD 455
           E  L +   ++L++NP E+  ++  +I+ +  R   +K RE+ RK   I    L GKL+D
Sbjct: 349 ETLLNEHLMNFLLENPKESKPIITKIIQSARSREAAKKAREITRKKGTIESTNLSGKLSD 408

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +E+++VEGDSAGGSAKQ RNR NQA+LPL+GKILN+  A  EKI N+ +++ 
Sbjct: 409 CQEKDPLFSEIYLVEGDSAGGSAKQGRNRRNQAILPLKGKILNIEKARLEKIINSSELVT 468

Query: 516 LVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           L+  LGC    +  + + LRY  +IIMTDADVDG HI +LLLTFF+++M ++I++ H+++
Sbjct: 469 LITVLGCGFGKEEYDLKKLRYNYIIIMTDADVDGLHIRTLLLTFFFRQMPEIIKKGHIYI 528

Query: 575 ISPPLFRITQGTKSVYAHDEEHK---------------QKILEEFKKHGKGKIEISRFK 618
             PPL++I +G K  Y  D                    KI +E K+    KI     K
Sbjct: 529 AQPPLYKIKEGKKEKYLTDTNELYKYQYQLIQKKCYLVYKIKQEKKEETFSKIIFQYNK 587



 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I    K    ++     KI+    K     + I R+KGLGEM   QL  T M+   R +L
Sbjct: 700 IKLNNKKFIFNNI---DKIITLLIKETNDFLNIQRYKGLGEMNPEQLWMTTMNPKTRKML 756

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V +N      K      + LMG   + R  FI++ A +  ++ 
Sbjct: 757 QVTMND----AKSADQLFSILMGDLVEPRRNFIKKNALYAKNID 796


>gi|332036861|gb|EGI73322.1| DNA gyrase subunit B [Pseudoalteromonas haloplanktis ANT/505]
          Length = 784

 Score =  468 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 212/553 (38%), Positives = 330/553 (59%), Gaps = 18/553 (3%)

Query: 64  MYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122
           MYIG TD+   LHH+  EV+DN++DE +AG+ + I V++  +G ++V DNGRGIP   H 
Sbjct: 1   MYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDDIYVTIHLDGSVSVRDNGRGIPTSIHE 60

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
           +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L +TV R+  +  Q
Sbjct: 61  E-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKLTVRREGKLHEQ 119

Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
            ++ G+P +PL          GT + F P  + F +   F    L K  +  ++L+  V 
Sbjct: 120 FYTMGVPDAPLAVIGD-SETTGTELRFWPSAETFTNL-DFHYDILAKRLRELSFLNSGVS 177

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
              + ++E        + + F + GG++ +++    N++ I   +F    E++     +V
Sbjct: 178 IILNDERE------ENKSDHFKYEGGIQAFVEYLNRNKTPIHKGVFHFTHERE-EDGISV 230

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYA----ELTQNKRAISI 357
           E ++ W +     I  + N I   +GGTH +G R ALTR +  Y        + K   + 
Sbjct: 231 EVSMQWNDAYQENIYCFTNNIPQRDGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNA 290

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD       ++SV + +P+F+ QTK KLVS + +  VE A+ + F  +L++NP +A  
Sbjct: 291 TGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQAMAEKFTEFLLENPTDAKI 350

Query: 418 LLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++  +I+ S  R   RK R    RK A+    LPGKLADC +     +EL+IVEGDSAGG
Sbjct: 351 VVGKIIDASRAREAARKAREMTRRKGAMDLAGLPGKLADCQEKDPAQSELYIVEGDSAGG 410

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRY 535
           SAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  E LRY
Sbjct: 411 SAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPEKLRY 470

Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEE 595
            ++IIMTDADVDG+HI +LLLTFFY++M +++E+ ++++  PPL+++ +G +  Y  D+ 
Sbjct: 471 HRIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGYIYIAQPPLYKVKKGKQERYIKDDP 530

Query: 596 HKQKILEEFKKHG 608
              + L     + 
Sbjct: 531 ALVEYLTSLALNN 543



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G K+      ++    LE      K  I I R+KGLGEM  SQL ET MD + R +L
Sbjct: 687 IQRGEKT---KPVDNFVDALEWLITESKRGIYIQRYKGLGEMNPSQLWETTMDPSARRML 743

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R +FI+  A  + ++ 
Sbjct: 744 QVTIEDAVG----ADQLFATLMGDQVEPRREFIETNALRVVNLD 783


>gi|71905645|ref|YP_283232.1| DNA gyrase subunit B [Dechloromonas aromatica RCB]
 gi|71845266|gb|AAZ44762.1| DNA gyrase subunit B [Dechloromonas aromatica RCB]
          Length = 834

 Score =  468 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 230/603 (38%), Positives = 339/603 (56%), Gaps = 37/603 (6%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNA 85
            E     +    + S  Y  SSI+ILEGLE VR RPGMYIG T D   LHHL  EV+DN+
Sbjct: 2   SEENTPMSSPQDAGSPAYGESSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNS 61

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGK 142
           +DE +AG+ N I V++  +  ++V+DNGRGIP          P +S  EI LT LHAGGK
Sbjct: 62  IDEALAGHCNDIIVTIHTDNSISVIDNGRGIPTGVKMDDKHEPKRSAAEIALTELHAGGK 121

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL------------ 190
           F+ ++Y++SGGLHGVG+S VNALS  L +T+ R       +F RG+P+            
Sbjct: 122 FNQNSYKVSGGLHGVGVSCVNALSKFLRLTIRRDGKKHFMEFCRGVPVDRSIEVRNGLEV 181

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           SP++        RGT + F  D +IFG    F    L K  +  ++L+  V       + 
Sbjct: 182 SPMKILGDTEK-RGTEVHFLADEEIFG-HVEFHYEILAKRLRELSFLNNGVSIKLVDQR- 238

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR-------GTVE 303
                   ++E F F GG++++++     +S++   IF    E K             VE
Sbjct: 239 ------TGKEELFAFAGGVQSFVEYINRTKSVLHPSIFYSAGEAKVGQGAADTGIIIGVE 292

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISD 360
            A+ W +    ++  + N I   +GGTH +GLR A+TR I KY +  +   K  + I  D
Sbjct: 293 VAMQWNDSYQEQVLCFTNNIPQSDGGTHLTGLRAAMTRVINKYIDENEIAKKAKVDIAGD 352

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D+      +LSV + +P+FA QTK KLVS +A+  VE  +      +L++ P++A  +  
Sbjct: 353 DMREGLACVLSVKMPDPKFASQTKMKLVSSEARAAVEEVVAQKLADFLLERPVDAKMICG 412

Query: 421 WVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
            ++E S  R   R+ RE+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAK
Sbjct: 413 KIVEASRAREAARRAREMTRRKGVLDGVGLPGKLADCQEKDPALCEIYIVEGDSAGGSAK 472

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKV 538
           Q R+R  QA+LPLRGK+LNV  A  +K+ +++QI+ L+ ALG          E LRY ++
Sbjct: 473 QGRDRKFQAILPLRGKVLNVEKARFDKLISSEQIVTLITALGTGIGKDDFNVEKLRYHRI 532

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQ 598
           IIMTDADVDGAHI +LLLT  Y++M +LI++ ++++  PPL+++  G    Y  D++   
Sbjct: 533 IIMTDADVDGAHIRTLLLTLLYRQMPELIDRGYVYIAQPPLYKVKHGKTERYLKDDQEYH 592

Query: 599 KIL 601
           + L
Sbjct: 593 QFL 595



 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
               ++      +  I   R+KGLGEM   QL ET MD   R LLRV+I+  +       
Sbjct: 750 FADAMKWLLNEVERGIAKQRYKGLGEMNPEQLWETTMDPKVRRLLRVQIDDAI----AAD 805

Query: 657 DSINKLMGTKADERFKFIQERA 678
           +    LMG   + R  FI+  A
Sbjct: 806 EIFTTLMGEDVEPRRAFIETNA 827


>gi|94957786|gb|ABF47143.1| DNA gyrase subunit B [Entomoplasma somnilux]
          Length = 552

 Score =  468 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 226/564 (40%), Positives = 329/564 (58%), Gaps = 17/564 (3%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T +  LHHL  E++DN++DE +AG A+ I+VS+  +G + V D+GRGIPV    K   KS
Sbjct: 2   TSKSGLHHLVWEILDNSIDEAMAGAAHEIKVSITKDGEIIVQDDGRGIPVGIQ-KDSGKS 60

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
            LE++ T LHAGGKFD+ +Y+ISGGLHGVG SVVNALS  + V V R    F Q FS G 
Sbjct: 61  ALELVFTQLHAGGKFDSDSYKISGGLHGVGASVVNALSLYVDVIVERDGKKFHQLFSNGG 120

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
            +    +     ++ GT + F+PDP+IF +   FD   +    +  AYL+  +K     +
Sbjct: 121 TIQSELEILSDSSRTGTTVRFKPDPEIFQESVNFDYITIKNKVKQLAYLNKGIKLNLVDE 180

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +       I +   F+FP G+  Y++ + E ++ I+  +F    + +      VE A+ +
Sbjct: 181 R-------IDKAVNFHFPNGILDYVREENETKTKINPNVFYTDGKFEDI---EVEVALQY 230

Query: 309 CEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMIS 365
             +  E   ++ N I T EGGTHE GLR +LTR I +YAE     NK+      DD+   
Sbjct: 231 NADYNENLITFVNNINTHEGGTHEDGLRQSLTRVINRYAEKVVKANKQPQKFSWDDVKEG 290

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
            + ILS+   +P+F GQTKTKL + DA++ V+  + D F+ +L+++P +A  +L+     
Sbjct: 291 VICILSIRHTDPQFEGQTKTKLANPDAKKAVDTIVGDAFEEFLLKSPDDAKAILDKNTNA 350

Query: 426 SEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
            + R+  ++ RE   RK A+    LPGKLADC        EL++VEGDSAGGSAK  RNR
Sbjct: 351 QKARIAAQRAREETRRKGALDTFSLPGKLADCETKDPTIAELYLVEGDSAGGSAKTGRNR 410

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
            +QA+LPLRGK+LNV      +   N +I  +V A+G   +       +RY K++IMTDA
Sbjct: 411 KHQAILPLRGKVLNVERVQEARAFTNNEIKSIVTAIGTGIKEDLDLSKIRYGKIVIMTDA 470

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           DVDGAHI +LLLTFFY+ M DL+   ++F+  PPLF+I  G K  YA+ +   +++  + 
Sbjct: 471 DVDGAHIRTLLLTFFYRYMKDLVRNGNIFIAQPPLFKIEAGKKVAYAYSDAELEEL--KL 528

Query: 605 KKHGKGKIEISRFKGLGEMLASQL 628
                 +  I R+KGLGEM   QL
Sbjct: 529 GDFSGSRFTIQRYKGLGEMDPMQL 552


>gi|30088962|gb|AAP13529.1| DNA gyrase subunit B [Acholeplasma pleciae]
          Length = 536

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 208/549 (37%), Positives = 321/549 (58%), Gaps = 16/549 (2%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T E+ LHHL  E++DN++DE + GYA+ I + +     + V DNGRGIPV+ HPK   + 
Sbjct: 2   TGERGLHHLVWEIVDNSIDEALGGYADEITIEILKGEIIRVTDNGRGIPVDTHPK-TGRP 60

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
            +E ILTTLHAGGKFD  +Y++SGGLHGVG SVVN LS+   V + +   I+ QK+ RGI
Sbjct: 61  AVETILTTLHAGGKFDKGSYKVSGGLHGVGASVVNGLSEWFVVEIHKDGVIYEQKYERGI 120

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
           P   L+      ++ GT I+F+ DP IF +   ++   L    Q  A+L+  +K     D
Sbjct: 121 PAYDLKTLG-TTDRSGTVISFQSDPLIFKETVIYNYETLRTRIQQLAFLNKGLKLNLIDD 179

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +     +   + E F++ GG+  Y++   + ++ I  +I   + E+      T+E A+ +
Sbjct: 180 R-----FEEVKTESFHYEGGIIEYVKFLNQAKTRIHPDIIYIEKEQDDI---TIELALQF 231

Query: 309 CEENPEITS-YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAV 367
            +        + N I T EGG HE G ++ALTR I KYA+  + K+  SI  +D      
Sbjct: 232 VDSYSPNLHSFTNNISTTEGGMHEDGFKMALTRVISKYADELKMKKDDSISGEDTREGLT 291

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            I+SV   EP+F GQTKTKL + + +        +  + +L++NP +A  ++E V+  + 
Sbjct: 292 AIISVKHPEPQFEGQTKTKLGNPEVRAITSQITSEALERFLMENPAQAKAIVEKVLLATR 351

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R+  RK ++   RK+ +  L    KLADC       +E++IVEGDSAGGSAKQ R+   
Sbjct: 352 ARVAARKAKDLTRRKSPLDALGFASKLADCRSKDPEKSEIYIVEGDSAGGSAKQGRDSEF 411

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADV 546
           QA++PLRGK+LNV  A  +K+ +N++I++L+QA+G     ++     RY K++IMTDADV
Sbjct: 412 QAIMPLRGKVLNVEKARLDKMLSNKEIVNLIQAMGTGISDEFDITKARYHKIVIMTDADV 471

Query: 547 DGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKK 606
           DGAHI +LLLTF ++ M  LI+  +++   PPL++++ G  S YA+ E+    IL++ + 
Sbjct: 472 DGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYKVSWGRNSEYAYTEQELNIILKKIE- 530

Query: 607 HGKGKIEIS 615
               K  I 
Sbjct: 531 ---TKPNIQ 536


>gi|215272278|dbj|BAG84634.1| DNA gyrase subunit B [Psychrobacter fulvigenes]
 gi|215272280|dbj|BAG84635.1| DNA gyrase subunit B [Psychrobacter fulvigenes]
          Length = 753

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 210/548 (38%), Positives = 333/548 (60%), Gaps = 19/548 (3%)

Query: 60  MRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPV 118
           MRPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I++ +  +  ++V+DNGRG+PV
Sbjct: 1   MRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQIDIIIHEDESVSVMDNGRGVPV 60

Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178
           + HP+    S  ++I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+  
Sbjct: 61  DIHPE-EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGY 119

Query: 179 IFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLS 238
            + Q ++ G+P S +++ E   +K GT+I F P   +F     F+   L K  +  ++L+
Sbjct: 120 HYHQTYTDGVPDSEIQQMEAT-DKTGTQIRFYPSHDVFTGTT-FEYDILAKRLRELSFLN 177

Query: 239 GRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH 298
             V+   + ++       I ++ EF   GGL  ++      +  I+        + +G  
Sbjct: 178 SGVRIVLTDER-------IDKRHEFEHKGGLSEFVSYINAGKDGINEVFHFTSEQAEGI- 229

Query: 299 RGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAI 355
             +VE A+ W +    ++  + N I   +GGTH SG R ALTR +  Y +      K  +
Sbjct: 230 --SVEVALQWTDTYNEKVLCFTNNIPQRDGGTHLSGFRSALTRVLNSYMDRENLFKKEKV 287

Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415
               DD       I+SV + +P+F+ QTK KLVS + +  VE+A+ D F+ YL++NP   
Sbjct: 288 VATGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVRSAVESAMHDRFNDYLLENPSAG 347

Query: 416 TKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSA 474
             +   +++ +  R   RK      RKT +    LPGKLADC +     +EL+IVEGDSA
Sbjct: 348 KAIAGKIMDAARARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPALSELYIVEGDSA 407

Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDL 533
           GGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ +L+ ALGC     +Y  + +
Sbjct: 408 GGSAKQGRSRKTQAILPLKGKILNVERARFDKMLSSAEVGNLITALGCGIGPDEYNPDKV 467

Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHD 593
           RY K+IIMTDADVDG+HI +LLLTFF+++  +LIE+ ++++  PPL+++ +G + +Y  D
Sbjct: 468 RYHKIIIMTDADVDGSHIRTLLLTFFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKD 527

Query: 594 EEHKQKIL 601
           +E  +  L
Sbjct: 528 DEALKAYL 535


>gi|126640119|ref|YP_001083103.1| DNA gyrase [Acinetobacter baumannii ATCC 17978]
          Length = 784

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 213/544 (39%), Positives = 322/544 (59%), Gaps = 19/544 (3%)

Query: 64  MYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122
           MYIG TD+   LHH+  EV+DNA+DE +AG+ + I V++  +  ++V DNGRGIP + HP
Sbjct: 1   MYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCDEIIVTIHEDESVSVSDNGRGIPTDIHP 60

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
           +    S  E+ILT LHAGGKFD+++Y++SGGLHGVG+SVVNALS +LH+T+ R   I  Q
Sbjct: 61  E-EGVSAAEVILTILHAGGKFDDNSYKVSGGLHGVGVSVVNALSSKLHLTIYRAGQIHEQ 119

Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
           ++  G P  PL    +  +  GT + F P  + F     F+   L +  +  ++L+  V+
Sbjct: 120 EYHHGDPQYPLRVIGET-DNTGTTVRFWPSAETFSQTI-FNVEILARRLRELSFLNAGVR 177

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
                ++   E         + + GGL  +++   E ++ ++           G     V
Sbjct: 178 IVLRDERINLE-------HVYDYEGGLSEFVKYINEGKNHLNEIFHFTADADNGI---AV 227

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359
           E A+ W +     +  + N I   +GGTH +G R ALTRG+ +Y E      K  +++  
Sbjct: 228 EVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTG 287

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD       I+SV + +P+F+ QTK KLVS + +  VE A+   F  YL++NP  A  + 
Sbjct: 288 DDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIA 347

Query: 420 EWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
             +I+ +  R   RK      RK+A+    LPGKLADC +     +EL++VEGDSAGGSA
Sbjct: 348 GKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSA 407

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537
           KQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY K
Sbjct: 408 KQGRNRKMQAILPLKGKILNVERARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHK 467

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           +IIMTDADVDG+HI +LLLTFF+++M +L+E+ H+++  PPL+++ +G +  Y  D +  
Sbjct: 468 IIIMTDADVDGSHIRTLLLTFFFRQMPELVERGHIYIAQPPLYKLKKGKQEQYIKDNDAL 527

Query: 598 QKIL 601
           +  L
Sbjct: 528 ETYL 531



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 17/126 (13%)

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           +  + LIE    +L         +G + +      +  ++ +   +  +  + I R+KGL
Sbjct: 676 KSWFKLIEDG-AYL--------QKGDRRIQV---ANFHQVWQHILQDSRRGMMIQRYKGL 723

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GEM A QL ET MD   R +L+V I+  +    +     + LMG   + R  FI+E A  
Sbjct: 724 GEMNAEQLWETTMDPENRNMLQVTIDDAI----EADRMFSCLMGDDVEPRRAFIEENALN 779

Query: 681 IDDVGT 686
            D +  
Sbjct: 780 AD-IDA 784


>gi|261839663|gb|ACX99428.1| DNA gyrase subunit B [Helicobacter pylori 52]
          Length = 773

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 230/576 (39%), Positives = 337/576 (58%), Gaps = 17/576 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY + SI++L+GLE VR RPGMYIG T+   LHH+  EV+DNA+DE +AG+ + I ++L
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVGGLHHMVYEVVDNAVDESMAGFCDTINITL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV+ HP         ++LT LHAGGKFDN TY++SGGLHGVG+SV
Sbjct: 62  TDEGSCIVEDNGRGIPVDIHP-TEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDK 219
           VNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +   + GT I F PD  +    
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F A  L K  +  AYL+  +K  +  +K          +E +++  GLK +++   + 
Sbjct: 181 -EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLQETYFYEDGLKQFVKDSAK- 231

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
           + L++  I     +++      V  A A  + N    S+ N I T EGGTHE+G ++ L+
Sbjct: 232 KELLTPVISFKSMDEETRTSIEVALAYAD-DYNENTLSFVNNIKTSEGGTHEAGFKMGLS 290

Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + I +Y +     R    IS+D+    + ++S+ + EP F GQTK+KL S  A+  V   
Sbjct: 291 KAILQYIDENIKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKL 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + D    +L +NP EA  +    +  ++ R   +K RE   +K  +    LPGKLADC  
Sbjct: 351 VYDKIHQFLEENPNEAKIIANKALLATKAREASKKARELTRKKDNLSVGTLPGKLADCQS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  +   KI  +++I +++ 
Sbjct: 411 KDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMIT 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A GC  +  +  E LRY K+IIMTDADVDG+HI +LL+TFFY+ +  LIEQ H+++   P
Sbjct: 471 AFGCGIQESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           L++  +G   +Y  D       L E   HG   ++I
Sbjct: 531 LYKYKKGKTEIYLKDSIALDHFLIE---HGINSVDI 563



 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
             LEE + H K    I R+KGLGEM  + L ET M    R+L++++I      L+ T   
Sbjct: 690 AFLEEVENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIED----LEKTDAV 745

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            +  MG + + R  FIQ  A  +  + 
Sbjct: 746 FSLCMGDEVEPRRAFIQAHAKDVKQLD 772


>gi|109947377|ref|YP_664605.1| DNA gyrase subunit B [Helicobacter acinonychis str. Sheeba]
 gi|109714598|emb|CAJ99606.1| DNA gyrase subunit B [Helicobacter acinonychis str. Sheeba]
          Length = 773

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 229/569 (40%), Positives = 333/569 (58%), Gaps = 14/569 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y + SI++L+GLE VR RPGMYIG T+   LHH+  EV+DNA+DE +AG+ + I ++L
Sbjct: 2   QDYQSHSIKVLKGLEGVRKRPGMYIGDTNVGGLHHMVYEVVDNAVDESMAGFCDAINITL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV  HP         ++LT LHAGGKFDN TY++SGGLHGVG+SV
Sbjct: 62  TDEGSCIVEDNGRGIPVGIHP-TEKIPACTVVLTMLHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN--KRGTRITFRPDPKIFGDK 219
           VNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +N  + GT I F PD  +    
Sbjct: 121 VNALSKRLIMTIKKEGRIYRQEFEKGIPISELEIIGKTKNAKESGTTIEFFPDGSVMEVV 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F A  L K  +  AYL+  +K  +  +K          +E +++  GLK +++   + 
Sbjct: 181 -EFQANILQKRFKEMAYLNDGLKIAFKEEK-------TQLQETYFYEDGLKQFVKDSTK- 231

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
           + L++S I     + +      V  A A  + N    S+ N I T EGGTHE+G ++ L+
Sbjct: 232 KELLTSVISFKSMDGETHTSIEVALAYAD-DYNENTLSFVNNIKTSEGGTHEAGFKMGLS 290

Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + I +Y +     +    IS+D+    V I+S+ + EP F GQTK+KL S   +  V   
Sbjct: 291 KAILQYIDNNIKTKESRPISEDIKEGLVAIVSLKMSEPLFEGQTKSKLGSSYVRALVSKL 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + D    +L +NP EA  +   V+  ++ R   +K RE   +K  +    LPGKLADC  
Sbjct: 351 VYDKIHQFLEENPNEAKIIANKVLLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  +   KI  +++I +++ 
Sbjct: 411 KDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMIT 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A GC  +  +  E LRY K+IIMTDADVDG+HI +LL+TFFY+ +  LIEQ H+++   P
Sbjct: 471 AFGCGIQESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKH 607
           L++  +G   +Y  D       L E   +
Sbjct: 531 LYKYKKGKTEIYLKDSVALDHFLIEHGVN 559



 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
             LEE + H K    I R+KGLGEM  + L ET M    R+L++++I      L+ T   
Sbjct: 690 AFLEEVENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIED----LEKTDAV 745

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            +  MG + + R  FIQ  A  +  + 
Sbjct: 746 FSLCMGDEVEPRRAFIQAHAKDVKQLD 772


>gi|240142256|ref|YP_002966766.1| DNA gyrase, subunit B [Methylobacterium extorquens AM1]
 gi|240012200|gb|ACS43425.1| DNA gyrase, subunit B [Methylobacterium extorquens AM1]
          Length = 816

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 227/579 (39%), Positives = 327/579 (56%), Gaps = 19/579 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           YDASSI++LEGLE VR RPGMYIG T D    HH+  EV+DN +DE +AG+A+ + V+L+
Sbjct: 10  YDASSIQVLEGLEAVRKRPGMYIGDTNDGTGFHHMVWEVVDNGIDECLAGHADRVTVTLN 69

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G +TVVDNGRGIPV+ HPK+P KS  EII+T LHAGGKFD ++Y++SGGLHGVG+SVV
Sbjct: 70  ADGSVTVVDNGRGIPVDPHPKYPGKSAAEIIMTVLHAGGKFDQNSYKVSGGLHGVGVSVV 129

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L +T+ R        F  G P  P+      + +RGT +TF P  + F     F
Sbjct: 130 NALSSLLELTIWRGGREHYMAFEHGEPAGPIRDVGDAKGRRGTSVTFTPSLRTFTGVVEF 189

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE--NR 280
            AA + +  +  A+L+  V+  +   +              Y+ GG+  Y+        R
Sbjct: 190 SAAVIERRLRELAFLNSGVRIVFHDRRVKDVDPVE-----MYYEGGVGEYVGYIDRTAGR 244

Query: 281 SLISSEIFTGKTEKKGTHRGT-------VEWAIAWCE-ENPEITSYCNTILTDEGGTHES 332
             + +     +TE+     G        +E A+ W +     +  + N I   +GGTH  
Sbjct: 245 DRVIARPIVVRTERSVEVEGNPGPIPVGIEVALQWNDSTTESVLPFTNNIPQTDGGTHVQ 304

Query: 333 GLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           G + ALTR    Y +    K    +  DDL      I+SV + +P+FA QTK KLVS + 
Sbjct: 305 GFKTALTRSFMAYVDRNPLKTKTGLSGDDLREGLTAIVSVKLPDPKFASQTKAKLVSNEV 364

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLP 450
              V++A+ +    +L +NP +A K+++  +E +  R   ++ RE+ R+  +      LP
Sbjct: 365 SGPVQSAVGEALATWLDENPADARKVIDKAVEAAAAREAAKRAREMVRRKTVLDDITSLP 424

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +E+ IVEGDSAGGSAKQ R+   QAVLPLRGKILN  +A  ++I  N
Sbjct: 425 GKLADCRERDPSKSEILIVEGDSAGGSAKQGRDSEFQAVLPLRGKILNTETARLDRIMKN 484

Query: 511 QQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
             +  LV+ALGC       +   +RY ++IIMTDADVDGAHI +LLL FF++ M +LI +
Sbjct: 485 AAVGTLVKALGCGIGKGSHDPDKVRYHRIIIMTDADVDGAHIRTLLLAFFFRHMPELINR 544

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
             ++   PPL+ I +  +  +  D+    + L      G
Sbjct: 545 GFVYKAEPPLYSIEKKGRKTFLRDDVALDRELLRLGSEG 583



 Score = 91.0 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            + +  ++ G   + I R+KGLGEM A QL ET +D   R+++++ +     +       
Sbjct: 734 SLFDHVRELGGKGLTIGRYKGLGEMTAQQLSETTLDPTARSIVQIRVEDAEAARAKVDQ- 792

Query: 659 INKLMGTKADERFKFIQERASFID 682
              LMG+K++ R   ++ R   ++
Sbjct: 793 ---LMGSKSEPRKHLLETRGHLVE 813


>gi|254451957|ref|ZP_05065394.1| DNA gyrase, B subunit [Octadecabacter antarcticus 238]
 gi|198266363|gb|EDY90633.1| DNA gyrase, B subunit [Octadecabacter antarcticus 238]
          Length = 775

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 215/551 (39%), Positives = 318/551 (57%), Gaps = 16/551 (2%)

Query: 64  MYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122
           MYIG TD+   LHH+  EV+DN +DE +AG+A+ + V +  +G ++V DNGRGIPV  H 
Sbjct: 1   MYIGDTDDGSGLHHMVYEVVDNGIDEALAGHADAVNVKIHDDGSISVSDNGRGIPVGIH- 59

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
           +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALSD L + + R       
Sbjct: 60  EGEGVSAAEVIMTQLHAGGKFDSNSYKVSGGLHGVGVSVVNALSDYLELRIWRNGKEHYA 119

Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
           +F  G  +  LE      ++ GT + F      F ++  F    L K  +  A+L+  V+
Sbjct: 120 RFEGGFTVKHLEVVADCGDRTGTEVRFLASLDTFSNR-DFYFETLEKRLRELAFLNSGVR 178

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
              + ++            E Y+ GG+K +++    +++ I  E      E+       V
Sbjct: 179 IILTDER-----PAEHLVSELYYDGGVKEFVKYLDRSKTSILPEPIYVIGERDEI---VV 230

Query: 303 EWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359
           E A+ W +   E+   + N I   +GGTH +G R ALTR I  YA+ +    K  IS   
Sbjct: 231 EVAMWWNDSYNEMVLPFTNNIPQRDGGTHMAGFRAALTRTINNYAQSSGIAKKEKISFTG 290

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD       +LSV + +P+F+ QTK KLVS + +  VEN + +    +  +NP  A  ++
Sbjct: 291 DDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENIMNEKLSEWFEENPQIARIVV 350

Query: 420 EWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
             ++E +  R   RK R+   RKTA+    L GKL DCS+     TE+F+VEGDSAGGSA
Sbjct: 351 SKIVEAAHAREAARKARDLTRRKTAMDVNFLAGKLKDCSEKDPSKTEVFLVEGDSAGGSA 410

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537
           +  R+R  QA+LPL+GKILNV  A  +++  +Q+I +LV ALG    R ++  + LRY K
Sbjct: 411 QTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVMALGTGIGRDEFNIDKLRYHK 470

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           ++IMTDADVDGAHI +LLLTFF+++M  LIE+ HL++  PPL+++++G   VY  D+   
Sbjct: 471 IVIMTDADVDGAHIRTLLLTFFFRQMPQLIERGHLYIAQPPLYKVSRGKSEVYLKDQAAM 530

Query: 598 QKILEEFKKHG 608
              L E    G
Sbjct: 531 NDYLTEQGVEG 541



 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 52/87 (59%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L+   + G+  + + R+KGLGEM  SQL ET +D + RTLL+V+++     + +  D 
Sbjct: 692 DLLKAVLEEGERGLSLQRYKGLGEMNPSQLWETTLDPDARTLLQVKVDD----VAEADDL 747

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R +FIQ+ A  ++++ 
Sbjct: 748 FTKLMGDVVEPRREFIQQNALNVENLD 774


>gi|163751706|ref|ZP_02158925.1| DNA gyrase, B subunit [Shewanella benthica KT99]
 gi|161328445|gb|EDP99601.1| DNA gyrase, B subunit [Shewanella benthica KT99]
          Length = 781

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 210/551 (38%), Positives = 327/551 (59%), Gaps = 17/551 (3%)

Query: 64  MYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122
           MYIG TD+   LHH+  EV+DN++DE +AG+ + I + +  +G ++V D+GRGIPV+ HP
Sbjct: 1   MYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCSEIVIIIHTDGSVSVKDDGRGIPVDIHP 60

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
           +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R   ++ Q
Sbjct: 61  E-EGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLQLIIRRNGKLYEQ 119

Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
            ++ G+P +P+++     +  GT + F P  K F +   F    L+K  +  ++L+  V 
Sbjct: 120 FYTMGVPDAPIKEIGDATS-TGTELRFWPSHKTFTNNIEFHFDILVKRVRELSFLNSGVG 178

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
                +++  +       E F + GG+  ++     N++ ++ ++F    E+      TV
Sbjct: 179 IRLIDERDNRD-------EFFEYQGGISAFVDYLNINKTPVNKDVFHFIHERDD--GITV 229

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIIS 359
           E A+ W +     I  + N I   +GGTH +G R ALTR +  Y E      K   S   
Sbjct: 230 EVAMQWNDGYQENIFCFTNNIPQRDGGTHLAGFRGALTRNLNAYMEREGYNKKGKTSATG 289

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD       ++SV + +P+F+ QTK KLVS + +  VE  + +    YL+++P EA  ++
Sbjct: 290 DDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGEKLGDYLMEHPTEARLIV 349

Query: 420 EWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
             +I+ S  R   RK R    RK A+    LPGKLADC +     +E++IVEGDSAGGSA
Sbjct: 350 GKIIDASRAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPALSEIYIVEGDSAGGSA 409

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537
           KQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC     +Y  +  RY  
Sbjct: 410 KQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGPDEYDPDKTRYHN 469

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           ++IMTDADVDG+HI +LLLTFF+++M +LIE+ ++++  PPL+++ +G +  Y  DE   
Sbjct: 470 IVIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIYIAQPPLYKVKKGRQEQYLKDELAL 529

Query: 598 QKILEEFKKHG 608
            + L      G
Sbjct: 530 TEFLTNLALDG 540



 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           + L       +  + I R+KGLGEM   QL ET MD   R +L V I   +         
Sbjct: 698 EALNWLMNDSRRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLVVTIEDAIG----ADQL 753

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
              LMG + + R KFI++ A  + ++ 
Sbjct: 754 FTCLMGDQVEPRRKFIEDNALNVANLD 780


>gi|95020427|gb|ABF50738.1| DNA gyrase subunit B [Mesoplasma grammopterae]
 gi|95020429|gb|ABF50739.1| DNA gyrase subunit B [Mesoplasma grammopterae]
          Length = 553

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 226/566 (39%), Positives = 325/566 (57%), Gaps = 17/566 (3%)

Query: 67  GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           G T +  LHHL  E++DN++DE +AG+AN I +++   G + V DNGRGIPV        
Sbjct: 1   GSTSKAGLHHLVWEIMDNSVDEAMAGFANKIILTITKEGEIIVQDNGRGIPVGIQA-DSG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           KS LE++ T LHAGGKFD+ +Y+ISGGLHGVG SVVNALS  + V V R+  I  Q FS 
Sbjct: 60  KSALELVFTQLHAGGKFDSDSYKISGGLHGVGASVVNALSLYVDVQVKREGKIHHQIFSG 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G       +     N+ GT + F+PDP+IF +   FD   +    +  +YL+  +    +
Sbjct: 120 GGTQQTEIEIIGETNETGTIVRFKPDPEIFLEGTEFDYETIRNKVKQLSYLNKGLVIELN 179

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +       I +  E++FP G+  Y++ K E +  I+  IF    +        VE A+
Sbjct: 180 DLR-------IDKHVEYHFPNGILDYVKEKNETKVKINPSIFYVDNKHDDI---EVEVAL 229

Query: 307 AWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLM 363
            +  E  E   ++ N I T EGGTHE GLR +L R I +YAE   T NK A     DD+ 
Sbjct: 230 QYNAEYQENLITFVNNINTHEGGTHEDGLRQSLVRVINRYAEKVATGNKPAAKYSWDDIK 289

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
              V I+S+   +P++ GQTKTKL + DA++ V+  + D F+ +L+++P +A  +++   
Sbjct: 290 EGMVCIVSIRHTDPQYEGQTKTKLANPDAKKAVDAVVGDAFEEFLLKSPEDAKAIIDKNA 349

Query: 424 ERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
              + R+  ++ RE   RK+A+    LPGKLADC        EL++VEGDSAGGSAK  R
Sbjct: 350 NAQKARIAAQRAREETRRKSALDTFSLPGKLADCESKDPEIAELYLVEGDSAGGSAKTGR 409

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           NR  QA+LPLRGK+LNV      +   N +I  +V A+G   +       LRY K++IMT
Sbjct: 410 NRRFQAILPLRGKVLNVERVAEVRAFANNEIKSIVTAIGTGIKEDIDLSKLRYGKIVIMT 469

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILE 602
           DADVDGAHI +LLLTFFY+ M  L+ + H+++  PPL++I  G K  YA+ +   +++  
Sbjct: 470 DADVDGAHIRTLLLTFFYRYMKQLVVEGHVYIAQPPLYKIEAGKKVAYAYSDIELEELKA 529

Query: 603 EFKKHGKGKIEISRFKGLGEMLASQL 628
                   +  I R+KGLGEM   QL
Sbjct: 530 --GDFKDSRFTIQRYKGLGEMDPIQL 553


>gi|152989756|ref|YP_001355478.1| DNA gyrase subunit B [Nitratiruptor sp. SB155-2]
 gi|151421617|dbj|BAF69121.1| DNA gyrase subunit B [Nitratiruptor sp. SB155-2]
          Length = 774

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 233/582 (40%), Positives = 339/582 (58%), Gaps = 21/582 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y A  I++L+GLE VR RPGMYIG T  K LHHL  EV+DNA+DE +AGY N I+++L
Sbjct: 4   QQYGAEKIKVLKGLEAVRKRPGMYIGDTSVKGLHHLIYEVVDNAIDEAMAGYCNKIDITL 63

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST-YEISGGLHGVGIS 160
             +G   + DNGRGIPV+ HP         ++LT LHAGGKF   + Y++SGGLHGVG+S
Sbjct: 64  TKDGSARISDNGRGIPVDIHP-TEKIPAATVVLTVLHAGGKFGGDSAYKVSGGLHGVGVS 122

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L +T+ R   I+ Q+F RGIP++ L    + R + GT I F PD +IF    
Sbjct: 123 VVNALSKKLIMTIKRDGKIWRQEFERGIPITDLVAIGETR-QTGTTIEFWPDEEIFET-T 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L +  +  AYL+  +   +  ++   +       E ++F GGL+ +++      
Sbjct: 181 EFKFDILSRRFKELAYLNPNITITFKDERVNTK-------EVYHFEGGLRQFVEDLNTKE 233

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALT 339
           +L  +  F             V+ A+ +    + ++ S+ N I T EGGTHESG R  LT
Sbjct: 234 ALTKTIYFH-----DKVDDVEVDIALLYNSGFDEKVFSFVNNIRTPEGGTHESGFRAGLT 288

Query: 340 RGIKKY--AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y        ++ + I  +D+    V ++SV + EP+F GQTK KL S   +   +
Sbjct: 289 RAISNYIAQNANAKEKNVKITGEDVREGLVAVISVKVPEPQFEGQTKGKLGSSYVRPITQ 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
               +    Y  +NP++A  ++   +  +  R   +K RE V RK ++    LPGKLADC
Sbjct: 349 KLTYEKLTKYFEENPLDAKAIMNKALAAARGREAAKKARELVRRKDSMSVGTLPGKLADC 408

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
                  +ELF+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +KI  +++I ++
Sbjct: 409 QSKDPSISELFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKARLDKILKSEEIKNI 468

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + ALGC    ++ EE LRY K+IIMTDADVDG+HI +LLLTFF++ +Y ++E+ +L++  
Sbjct: 469 ITALGCGIGEEFDEEKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFLYPVVEKGYLYMAQ 528

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRF 617
           PPL+R  +G K VY  D+    + L E        ++ I R+
Sbjct: 529 PPLYRYKKGKKEVYLKDDTELNQFLIENGVDTLLSEVNIGRY 570



 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 4/92 (4%)

Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
           E+   +ILE+ +K+ K    I R+KGLGEM   QL ET MD   R LLRV +     + +
Sbjct: 686 EKDLMEILEKVEKNAKKGAYIQRYKGLGEMNPEQLWETTMDPENRRLLRVTVE----NAE 741

Query: 654 DTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              D  +  MG + + R K+I+E A  +  + 
Sbjct: 742 HASDVFSLFMGDEVEPRKKYIEEHAKDVKHLD 773


>gi|57239156|ref|YP_180292.1| DNA gyrase subunit B [Ehrlichia ruminantium str. Welgevonden]
 gi|58579107|ref|YP_197319.1| DNA gyrase subunit B [Ehrlichia ruminantium str. Welgevonden]
 gi|57161235|emb|CAH58151.1| DNA gyrase subunit B [Ehrlichia ruminantium str. Welgevonden]
 gi|58417733|emb|CAI26937.1| DNA gyrase subunit B [Ehrlichia ruminantium str. Welgevonden]
          Length = 798

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 217/569 (38%), Positives = 332/569 (58%), Gaps = 11/569 (1%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++Y+ASSI +L+GL+ VR RPGMYIG TD+   LHH+  EVIDN++DE +AG+ N I++ 
Sbjct: 2   NDYNASSITVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVIDNSIDEALAGFCNKIDII 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +G ++V+DNGRGIPV+ H +       E+I+T LHAGGKFD+S+Y++SGGLHGVG+S
Sbjct: 62  IQNDGSVSVIDNGRGIPVDIH-EDEGIPAAEVIMTQLHAGGKFDHSSYKVSGGLHGVGVS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  L +T+ R    +  +F  GI ++PL    +   K+GT+ITF P   IF    
Sbjct: 121 VVNALSSWLELTIWRNGKEYFMRFEDGITVTPLSVVAENTTKKGTKITFLPSKDIFS-FI 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F+ + L    +  ++L+  +       ++          +       ++    +     
Sbjct: 180 SFNYSTLENRIRELSFLNSNININLKDLRDNQISDSSFGIKGHIKTSAIEDRGTSGFVKY 239

Query: 281 SLISSEIFTGKTEKKG---THRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRV 336
              +    T     +G        VE ++ W +     +  + N I   +GGTH +G R 
Sbjct: 240 LDRNKNPVTKVIHIEGNIPESGINVELSMHWNDSYYENMLCFTNNIRQRDGGTHLAGFRS 299

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           A+TR I  YA       K  +SI+ +D+      +LS+ + +P+F+ QTK KLVS +A+ 
Sbjct: 300 AMTRCINNYATNEGFLKKAKVSILGEDVREGLTCVLSIKLPDPKFSSQTKDKLVSSEART 359

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKL 453
            VEN + +   +    NP  A+ ++E +I  ++ R   RK R++   K       LPGKL
Sbjct: 360 AVENIVYEKLTNIFETNPKLASSVIERIIRSAKGREAARKARDIIKNKNGFDFTILPGKL 419

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +ELFIVEG+SAGGSAKQ R+R +QAVL L+GKILNV  A  ++I ++ +I
Sbjct: 420 ADCQEKSPELSELFIVEGNSAGGSAKQGRDRRSQAVLSLKGKILNVERASLDRILSSSEI 479

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ A+G       +  E +RY KVIIMTDADVDG+HI +LLLTFF++ M ++IE+ +L
Sbjct: 480 ASLITAVGSNIGVENFDIEKVRYHKVIIMTDADVDGSHIRTLLLTFFFRYMREIIEKGYL 539

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++  PPL+++TQ  K +Y  ++E     +
Sbjct: 540 YIAQPPLYKVTQNKKELYIKNDEMLYNYI 568



 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 4/88 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +++   + GK  + + RFKGLGEM A QL +T ++ + RTLL+++I+      +     
Sbjct: 715 SLVDNIIEFGKKDMTLQRFKGLGEMNADQLWDTTLNPDTRTLLKIKISD----CEAADSI 770

Query: 659 INKLMGTKADERFKFIQERASFIDDVGT 686
            + LMG   + R  FI   A  + ++  
Sbjct: 771 FSILMGDFVEPRRDFINNNALNVQNIDA 798


>gi|58617165|ref|YP_196364.1| DNA gyrase subunit B [Ehrlichia ruminantium str. Gardel]
 gi|58416777|emb|CAI27890.1| DNA gyrase subunit B [Ehrlichia ruminantium str. Gardel]
          Length = 798

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 217/569 (38%), Positives = 332/569 (58%), Gaps = 11/569 (1%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++Y+ASSI +L+GL+ VR RPGMYIG TD+   LHH+  EVIDN++DE +AG+ N I++ 
Sbjct: 2   NDYNASSITVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVIDNSIDEALAGFCNKIDII 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +G ++V+DNGRGIPV+ H +       E+I+T LHAGGKFD+S+Y++SGGLHGVG+S
Sbjct: 62  IQNDGSVSVIDNGRGIPVDIH-EDEGIPAAEVIMTQLHAGGKFDHSSYKVSGGLHGVGVS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  L +T+ R    +  +F  GI ++PL    +   K+GT+ITF P   IF    
Sbjct: 121 VVNALSSWLELTIWRNGKEYFMRFEDGITVTPLSVVAENTTKKGTKITFLPSKDIFS-FI 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F+ + L    +  ++L+  +       ++          +       ++    +     
Sbjct: 180 SFNYSTLENRIRELSFLNSNININLKDLRDNQISDSSFGIKGHIKTSAIEDRGTSGFVKY 239

Query: 281 SLISSEIFTGKTEKKG---THRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRV 336
              +    T     +G        VE ++ W +     +  + N I   +GGTH +G R 
Sbjct: 240 LDRNKNPVTKVIHIEGNIPESGINVELSMHWNDSYYENMLCFTNNIRQRDGGTHLAGFRS 299

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           A+TR I  YA       K  +SI+ +D+      +LS+ + +P+F+ QTK KLVS +A+ 
Sbjct: 300 AMTRCINNYATNEGFLKKAKVSILGEDVREGLTCVLSIKLPDPKFSSQTKDKLVSSEART 359

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKL 453
            VEN + +   +    NP  A+ ++E +I  ++ R   RK R++   K       LPGKL
Sbjct: 360 AVENIVYEKLTNIFETNPKLASSVIERIIRSAKGREAARKARDIIKNKNGFDFTILPGKL 419

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +ELFIVEG+SAGGSAKQ R+R +QAVL L+GKILNV  A  ++I ++ +I
Sbjct: 420 ADCQEKSPELSELFIVEGNSAGGSAKQGRDRRSQAVLSLKGKILNVERASLDRILSSSEI 479

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
             L+ A+G       +  E +RY KVIIMTDADVDG+HI +LLLTFF++ M ++IE+ +L
Sbjct: 480 ASLITAVGSNIGVENFDIEKVRYHKVIIMTDADVDGSHIRTLLLTFFFRYMREIIEKGYL 539

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++  PPL+++TQ  K +Y  ++E     +
Sbjct: 540 YIAQPPLYKVTQNKKELYIKNDEMLYDYI 568



 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 4/88 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +++   + GK  + + RFKGLGEM A QL +T ++ + RTLL+++I+      +     
Sbjct: 715 SLVDNIIEFGKKDMTLQRFKGLGEMNADQLWDTTLNPDTRTLLKIKISD----CEAADSI 770

Query: 659 INKLMGTKADERFKFIQERASFIDDVGT 686
            + LMG   + R  FI   A  + ++  
Sbjct: 771 FSILMGDFVEPRRDFINNNALNVQNIDA 798


>gi|237753472|ref|ZP_04583952.1| DNA gyrase subunit B [Helicobacter winghamensis ATCC BAA-430]
 gi|229375739|gb|EEO25830.1| DNA gyrase subunit B [Helicobacter winghamensis ATCC BAA-430]
          Length = 770

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 238/565 (42%), Positives = 329/565 (58%), Gaps = 21/565 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y   SI++L+GLE VR RPGMYIG T    LHHL  EV+DN +DE +AGY   I+V L 
Sbjct: 5   EYTGQSIKVLKGLEAVRKRPGMYIGDTSTNGLHHLIYEVVDNCIDEAMAGYCTKIDVILT 64

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            NG   + DNGRGIPV+ HP   N     + LT LHAGGKFD  TY  SGGLHGVG+SVV
Sbjct: 65  KNGGAKITDNGRGIPVDIHP-TENIPAATVALTILHAGGKFDQKTY--SGGLHGVGVSVV 121

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L +T+ + N I+ Q FS+GIP + LE   + +   GT I F PD  IF     F
Sbjct: 122 NALSTSLQMTIYKHNKIYRQDFSQGIPQNDLEIIGETKE-NGTTIEFIPDSSIFEVV-EF 179

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L K  +  AYL+ ++   +S +++          E ++F GGL  ++     N+  
Sbjct: 180 DKEILKKRFKELAYLNHQITIHFSDERD-------GFSEIYHFEGGLSQFITDI--NKKP 230

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRG 341
               I   + + +G     VE A+ + E  + ++ S+ N I T EGGTHE+G R  LTR 
Sbjct: 231 AIVSILGFEGKDEGV---EVEVALTYNEGFDEKVLSFVNNINTSEGGTHEAGFRAGLTRT 287

Query: 342 IKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  Y E   N  ++   I  DD+    V I+SV + +P+F GQTK KL S   +  V+  
Sbjct: 288 IMNYIEANANAREKDSKITGDDIREGLVAIVSVRVIDPQFVGQTKGKLGSTFVKPIVQKL 347

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
             +    Y  +NP EA  +++  +  +  R   +K RE   +K +     LPGKLADC  
Sbjct: 348 TYEKISKYFEENPNEAKAIMQKALLAARGREAAKKARELTRKKESFSVGTLPGKLADCQS 407

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +EL++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  +  +KI  +++I +L+ 
Sbjct: 408 KDPSISELYLVEGDSAGGSAKQGRDRVYQAILPLRGKILNVEKSRLDKILKSEEIKNLIT 467

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALGC    ++  E  RY K+IIMTDADVDG+HI +LL+TFF++ +  +IE  +L++  PP
Sbjct: 468 ALGCGIGEEFDIEKARYNKIIIMTDADVDGSHIQTLLMTFFFRYLKGIIEAGYLYIAQPP 527

Query: 579 LFRITQGTKSVYAHDEEHKQKILEE 603
           L+R  +G K +Y  DE+   + L E
Sbjct: 528 LYRFKKGKKEIYLKDEKALSEYLIE 552



 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 4/95 (4%)

Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
             + E    +LE+ +   K    I R+KGLGEM   QL ET M    R L+RVEI  D  
Sbjct: 679 FLNGEDPIAMLEKIEDSSKKGAYIQRYKGLGEMNPEQLWETTMTPENRRLIRVEIKDDGT 738

Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
                 D  +  MG + + R ++IQ  A  +  + 
Sbjct: 739 ----ASDVFSLFMGDEVEPRREYIQAHAKDVKHLD 769


>gi|68171653|ref|ZP_00545017.1| DNA gyrase, B subunit [Ehrlichia chaffeensis str. Sapulpa]
 gi|88657694|ref|YP_507430.1| DNA gyrase, B subunit [Ehrlichia chaffeensis str. Arkansas]
 gi|67998927|gb|EAM85614.1| DNA gyrase, B subunit [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599151|gb|ABD44620.1| DNA gyrase, B subunit [Ehrlichia chaffeensis str. Arkansas]
          Length = 798

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 215/571 (37%), Positives = 335/571 (58%), Gaps = 15/571 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           D+Y+ASSI +L+GL+ VR RPGMYIG TD+   LHH+  EVIDN++DE +AG+ N I++ 
Sbjct: 2   DDYNASSITVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVIDNSIDEALAGFCNKIDIV 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +G ++VVDNGRGIPV+ H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVGIS
Sbjct: 62  IQSDGSVSVVDNGRGIPVDMH-EDEGMSAAEVIMTQLHAGGKFDHNSYKVSGGLHGVGIS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  L +T+ R    +  +F  GI +  L    +   K+GT+ITF P   IF    
Sbjct: 121 VVNALSSWLELTIWRNGKEYFMRFEDGITVKSLSVVGENTTKKGTKITFLPSKNIFSSIN 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG-----GLKTYLQT 275
            F  + L    +  ++L+  +       +           ++          G   +++ 
Sbjct: 181 -FSYSTLENRIRELSFLNSNINMNLKDLRGAQILNSSFGLKDNSKVNDIEDRGTAAFVKY 239

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGL 334
              N++ ++  +       +  H  ++E ++ W +     +  + N I   +GGTH +G 
Sbjct: 240 LDRNKTAVTKVVHIEGIVLE--HGISLELSMHWNDSYYENMLCFTNNIRQKDGGTHLAGF 297

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R A+TR I  YA       K  ++I+ +D+      +L++ + +P+F+ QTK KLVS +A
Sbjct: 298 RSAMTRCINNYATNEGFLKKAKVNILGEDVREGLTCVLAIKLPDPKFSSQTKDKLVSSEA 357

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
           +  VEN + +   +    NP  AT ++E +I  ++ R   R+ R+ +  K       LPG
Sbjct: 358 RTAVENIVYEKLTNIFETNPKLATSIIERIIRSAKGREAARRARDLIKSKNGFDFTILPG 417

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +ELFIVEG+SAGGSAKQ R+R +QAVL L+GKILNV  A  ++I ++ 
Sbjct: 418 KLADCQEKSPELSELFIVEGNSAGGSAKQGRDRRSQAVLSLKGKILNVERASLDRILSSA 477

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           +I  L+ A+G       +  E +RY KVIIMTDADVDG+HI +LLLTFF++ M ++IE+ 
Sbjct: 478 EIASLITAIGSNIGTENFDIEKVRYHKVIIMTDADVDGSHIRTLLLTFFFRYMREVIEKG 537

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +L++  PPL+++T+  K  Y  +++     +
Sbjct: 538 YLYIAQPPLYKVTKHKKEFYIKNDDMLHDYI 568



 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 65/180 (36%), Gaps = 39/180 (21%)

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKV---IIMTDADVDGAHIASLLLTFFYQEMYDL- 566
            +I     + G   +       +  E +   I M D   D            +  M  L 
Sbjct: 654 DEISIFRLSHGLVDKYYINSAMMNSEDIKHVIAMCDGIED-----------IFYNMPILS 702

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
            +  ++ + SP                      +++   + GK  + + RFKGLGEM A 
Sbjct: 703 TKDNNIKISSP--------------------TSLVDNIIEFGKKDMTLQRFKGLGEMNAD 742

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           QL +T ++   RTLL+++I       +      + LMG   + R  FI   A  + ++  
Sbjct: 743 QLWDTTLNPETRTLLKIKI----ADCEAADSIFSVLMGDFVEPRRDFINNNALNVQNIDA 798


>gi|157165358|ref|YP_001465928.1| DNA gyrase subunit B [Campylobacter concisus 13826]
 gi|112801785|gb|EAT99129.1| DNA gyrase, B subunit [Campylobacter concisus 13826]
          Length = 769

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 233/572 (40%), Positives = 340/572 (59%), Gaps = 19/572 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
            +NY A +I++L+GLE VR RPGMYIG T+   LHH+  EV+DN++DE +AGY + I+V 
Sbjct: 2   ENNYGAENIKVLKGLEAVRKRPGMYIGDTNISGLHHMIYEVVDNSIDEAMAGYCDTIDVE 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L   G   + DNGRGIPV+ HP     S   ++LT LHAGGKFD  TY++SGGLHGVG+S
Sbjct: 62  LTREGSAIISDNGRGIPVDMHP-TEKISAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L V + R   +  Q+F++GIP S LE   K  N+ GT++ F PD  IF    
Sbjct: 121 VVNALSKKLVVNIKRDGKLHRQEFAKGIPQSDLEVI-KTTNRTGTQVEFWPDDSIFEVT- 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   L+K  +  AYL+ ++   +   +           E F+F GGL++++     N+
Sbjct: 179 EFDDEILVKRFRELAYLNPKITINFKDQR-------NGRSESFHFEGGLESFVTDM--NK 229

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALT 339
           +   S+  +    +       V++A+ + +   E   S+ N I T +GGTHE+G R  LT
Sbjct: 230 ANAVSKAVSFSGGEDDVM---VDFALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRAGLT 286

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y +      ++   I  +D+    + ++SV + EP+F GQTK KL S   +  V+
Sbjct: 287 RVITNYVQANAAAREKDTKITGEDIREGLIAVVSVKVPEPQFEGQTKGKLGSSYVKPIVQ 346

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
             + D    Y  +NPIEA  +++  +  +  R   +K R+   +K ++    LPGKLADC
Sbjct: 347 KMVFDVLTKYFEENPIEARAIMDKALMAARGREAAKKARDLTRKKESMSVGTLPGKLADC 406

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
                  +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +KI  + +I ++
Sbjct: 407 QSKDPVISELYLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKARLDKILKSDEIKNM 466

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + ALGC    ++  E LRY K+IIMTDADVDG+HI +LLLTFF++ +  ++E  H++L  
Sbjct: 467 ITALGCGIGDEFDAEKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFLNKVVENGHIYLAQ 526

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           PPL+R  +G K +Y  DE+   + L E    G
Sbjct: 527 PPLYRYKKGKKEIYLKDEKALNEFLIETGIEG 558



 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L+E +K+ K    I R+KGLGEM   QL ET M+   R LL+++IN  +       D+
Sbjct: 686 DVLDEVEKNAKKGAYIQRYKGLGEMNPEQLWETTMNPENRRLLKIDINDAI----SASDT 741

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            N  MG + + R  +IQ+ A  +  + 
Sbjct: 742 FNLFMGDEVEPRRNYIQDHAKDVKYLD 768


>gi|199601525|dbj|BAG70958.1| DNA gyrase subunit B [Psychrobacter pulmonis]
          Length = 626

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 210/547 (38%), Positives = 330/547 (60%), Gaps = 19/547 (3%)

Query: 61  RPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119
           RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I++ +  +  ++V+DNGRG+PV+
Sbjct: 2   RPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQIDIIIHEDESVSVMDNGRGVPVD 61

Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179
            HP+    S  ++I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+   
Sbjct: 62  IHPE-EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYH 120

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
           + Q ++ G+P + +++ E      GT+I F P   +F     F+   L K  +  ++L+ 
Sbjct: 121 YHQTYTDGVPDADIQQMEATNK-TGTQIRFYPSNDVFTGTI-FEYDILAKRLRELSFLNS 178

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            V+   + ++       I ++ EF   GGL  ++      +  I+        +  G   
Sbjct: 179 GVRIVLTDER-------IDKRHEFEHKGGLSEFVSYINAGKDGINEVFHFTSEQDDGI-- 229

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
            +VE A+ W +    ++  + N I   +GGTH SG R ALTRG+  Y +      K  I 
Sbjct: 230 -SVEVALQWTDTYNEKVLCFTNNIPQRDGGTHLSGFRSALTRGLNSYMDRENLFKKEKIV 288

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
              DD       I+SV + +P+F+ QTK KLVS + +  VE+A+ D F+ YL++NP    
Sbjct: 289 ATGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDYLLENPSAGK 348

Query: 417 KLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            +   +I+ +  R   RK      RKT +    LPGKLADC +     +EL+IVEGDSAG
Sbjct: 349 AIANKIIDAARARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPALSELYIVEGDSAG 408

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLR 534
           GSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ +L+ ALGC     +Y  + +R
Sbjct: 409 GSAKQGRSRKTQAILPLKGKILNVERARFDKMLSSAEVGNLITALGCGIGPDEYNPDKVR 468

Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDE 594
           Y K+IIMTDADVDG+HI +LLLTFF+++  +LIE+ ++++  PPL+++ +G + +Y  D+
Sbjct: 469 YHKIIIMTDADVDGSHIRTLLLTFFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDD 528

Query: 595 EHKQKIL 601
           E  +  L
Sbjct: 529 EALKAYL 535


>gi|94957780|gb|ABF47140.1| DNA gyrase subunit B [Entomoplasma melaleucae]
          Length = 553

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 227/566 (40%), Positives = 325/566 (57%), Gaps = 17/566 (3%)

Query: 67  GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           G T +  LHHL  E++DN++DE +AG+AN I +++   G + V DNGRGIPV        
Sbjct: 1   GSTSKAGLHHLVWEIMDNSVDEAMAGFANKIILTITQEGEIIVQDNGRGIPVGIQA-DSG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           KS LE++ T LHAGGKFD+ +Y+ISGGLHGVG SVVNALS  + V V R+  I  Q FS 
Sbjct: 60  KSALELVFTQLHAGGKFDSDSYKISGGLHGVGASVVNALSLYVDVEVKREGKIHHQVFSG 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G       +      + GT + F+PDPKIF +   FD   +    +  +YL+  +    +
Sbjct: 120 GGTKQTEIEIIGETTETGTIVKFKPDPKIFLEGTEFDYETIRNKVKQLSYLNKGLVIELN 179

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +       I +  E++FP G+  Y++ K E +  I+  IF    +        VE A+
Sbjct: 180 DLR-------IDKHVEYHFPNGILDYVKEKNETKVKINPSIFYVDDKHDDI---EVEVAL 229

Query: 307 AWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLM 363
            +  E  E   ++ N I T EGGTHE GLR +L R I +YAE   T NK A     DD+ 
Sbjct: 230 QYNAEYQENLITFVNNINTHEGGTHEDGLRQSLVRVINRYAEKVATGNKPAAKYSWDDIK 289

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
              V I+S+   +P++ GQTKTKL + DA++ V+  + D F+ +L+++P +A  +L+   
Sbjct: 290 EGMVCIISIRHTDPQYEGQTKTKLANPDAKKAVDAVVGDAFEEFLLKSPEDAKTILDKNA 349

Query: 424 ERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
              + R+  ++ RE   RK+A+    LPGKLADC        EL++VEGDSAGGSAK  R
Sbjct: 350 NAQKARIAAQRAREETRRKSALDTFSLPGKLADCESKDPEIAELYLVEGDSAGGSAKTGR 409

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           NR  QA+LPLRGK+LNV      +   N +I  +V A+G   +       LRY K++IMT
Sbjct: 410 NRRFQAILPLRGKVLNVERVAEVRAFANNEIKSIVTAIGTGIKEDIDLSKLRYGKIVIMT 469

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILE 602
           DADVDGAHI +LLLTFFY+ M  L+   H+++  PPL++I  G K  YA+ +   +++  
Sbjct: 470 DADVDGAHIRTLLLTFFYRYMKQLVVNGHVYIAQPPLYKIEAGKKVAYAYSDSELEELKA 529

Query: 603 EFKKHGKGKIEISRFKGLGEMLASQL 628
           +  +  +    I R+KGLGEM   QL
Sbjct: 530 DEFRDSR--YTIQRYKGLGEMDPIQL 553


>gi|115381176|gb|ABI96237.1| DNA gyrase subunit B [Spiroplasma insolitum]
          Length = 559

 Score =  465 bits (1197), Expect = e-128,   Method: Composition-based stats.
 Identities = 224/567 (39%), Positives = 327/567 (57%), Gaps = 13/567 (2%)

Query: 67  GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           G T+ + LHHL  EV+DN++DEV+A +AN I ++++ +  +TV DNGRGIP+E HPK   
Sbjct: 1   GATNVRGLHHLVWEVVDNSIDEVLANFANKITITINKDESITVTDNGRGIPIEIHPK-TK 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            STLE + T LHAGGKFD++TY+ISGGLHGVG SVVNALS  L + V + N  +  +F  
Sbjct: 60  VSTLETVFTVLHAGGKFDSNTYKISGGLHGVGASVVNALSKYLKIEVKKNNKQYLMEFHN 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  +    K+    N+ GT +TF PD KIF +   F  + +    +  A+L+  ++    
Sbjct: 120 GGQILTPIKEVGTTNETGTTVTFLPDEKIFKETTIFSFSTIQNRIKQLAFLNKGLEISLV 179

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +E  E+    +   + F  G+K Y+    +      +++F  +  +       VE+ +
Sbjct: 180 DLREEDEE----KSVVYQFNNGIKDYVLELNKTIGTPLNDVFYVEGIEDNII---VEFGL 232

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR---AISIISDDL 362
            + +     I S+CN I T EGGTHE G ++A+ R +  Y +               DD+
Sbjct: 233 QYNDNYSENIFSFCNNINTHEGGTHEEGTKLAIVRELNNYFKNINKNNKGNEDKFTWDDV 292

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
                 I+S+   +P++ GQTKTKL + + ++ V N +    + YL++NP +A  ++E +
Sbjct: 293 KEGMTTIISIRHPDPQYEGQTKTKLGNSEVKKIVSNIVGKGLNSYLLENPEDAKNIIEKI 352

Query: 423 IERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
               + R+  ++ +E   RKT +    LPGKLADC    ++  EL+IVEGDSAGGSAK  
Sbjct: 353 NLSLKARIAAQRAKETTRRKTVMDSFSLPGKLADCETKDSNIAELYIVEGDSAGGSAKAG 412

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541
           RNR  QA+LPLRGKILNV  A   K+  N +I  ++ ALG   +  + E+ LRY+KVIIM
Sbjct: 413 RNRRFQAILPLRGKILNVEKAKQLKVFENNEINSIITALGAGVKDSFNEKKLRYQKVIIM 472

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           TDADVDGAHI  LLLTFFY+ M DLIE  ++++  PPL++I  G    YA+ +   +   
Sbjct: 473 TDADVDGAHIRILLLTFFYRYMKDLIENGNVYIAQPPLYKIQNGNNIRYAYTDNELETYK 532

Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQL 628
           EE          I R+KGLGEM   QL
Sbjct: 533 EELLVKNIKNYMIQRYKGLGEMNPEQL 559


>gi|115381152|gb|ABI96225.1| DNA gyrase subunit B [Entomoplasma lucivorax]
          Length = 553

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 226/566 (39%), Positives = 323/566 (57%), Gaps = 17/566 (3%)

Query: 67  GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           G T +  LHHL  E++DN++DE +AG++N I +++   G + V DNGRGIPV        
Sbjct: 1   GSTSKAGLHHLVWEIMDNSVDEAMAGFSNKIILTITKEGEIIVQDNGRGIPVGIQA-DSG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           KS LE++ T LHAGGKFD+ +Y+ISGGLHGVG SVVNALS  + V V R+  I  Q FS 
Sbjct: 60  KSALELVFTQLHAGGKFDSDSYKISGGLHGVGASVVNALSLYVDVEVKREGKIHHQVFSG 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G       K      + GT + F+PDP+IF +   FD   +    +  +YL+  +    +
Sbjct: 120 GGTKQTEIKIIGDTAETGTTVKFKPDPEIFLEGTEFDYETIRNKVKQLSYLNKGLVIELN 179

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +       I +  E++FP G+  Y++ K E +  I+  IF             VE A+
Sbjct: 180 DLR-------IDKHVEYHFPNGILDYVKEKNETKVKINPSIFYV---DDKHEDIEVEVAL 229

Query: 307 AWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLM 363
            +  E  E   ++ N I T EGGTHE GLR +L R I +YAE   T NK A     DD+ 
Sbjct: 230 QYNAEYQENLITFVNNINTHEGGTHEDGLRQSLVRVINRYAEKVATGNKPAAKYSWDDIK 289

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
              V I+S+   +P++ GQTKTKL + DA++ V+  + D F+ +L+++P +A  +L+   
Sbjct: 290 EGMVCIVSIRHTDPQYEGQTKTKLANPDAKKAVDAVVGDAFEKFLLKSPEDAKAILDKNA 349

Query: 424 ERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
              + R+  ++ RE   RK+A+    LPGKLADC        EL++VEGDSAGGSAK  R
Sbjct: 350 NAQKARIAAQRAREETRRKSALDTFSLPGKLADCESKDPEIAELYLVEGDSAGGSAKTGR 409

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           NR  QA+LPLRGK+LNV      +   N +I  +V A+G   +       LRY K++IMT
Sbjct: 410 NRRFQAILPLRGKVLNVERVAEVRAFANNEIKSIVTAIGTGIKEDIDLSKLRYGKIVIMT 469

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILE 602
           DADVDGAHI +LLLTFFY+ M  L+   H+++  PPL++I  G K  YA+ +   +++  
Sbjct: 470 DADVDGAHIRTLLLTFFYRYMKRLVVDGHVYIAQPPLYKIEAGKKVAYAYSDAELEQL-- 527

Query: 603 EFKKHGKGKIEISRFKGLGEMLASQL 628
           +       +  I R+KGLGEM   QL
Sbjct: 528 KLSDFKYSRYTIQRYKGLGEMDPIQL 553


>gi|67906500|gb|AAY82607.1| predicted topoisomerase IV subunit B [uncultured bacterium
           MedeBAC35C06]
          Length = 605

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 221/623 (35%), Positives = 336/623 (53%), Gaps = 23/623 (3%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MY   TD    +HL  EV+DN++DE +AG+ + I++ L  + F+ V+DNGRG+PV+ HP+
Sbjct: 1   MY---TDTTNPNHLIQEVLDNSVDEALAGHCSKIKIILYKDQFIEVIDNGRGMPVDIHPE 57

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
               S +E+IL  LHAG KF  + Y  SGGLHGVG+SVVNALS  L   + R        
Sbjct: 58  H-KISGIELILCKLHAGAKFSGNEYNFSGGLHGVGVSVVNALSQNLEAKIKRDAKEHLIT 116

Query: 184 FSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
           FS G  ++ L    +V     G+ I F+P+   F      D   L+K+ ++KA L   + 
Sbjct: 117 FSNGDKVNDLSVIGEVGARNTGSSIKFKPNKDYFETD-KVDTKSLIKLIKAKAVLCPGLT 175

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
             +  +K+         +E +YF  GLK+YL    ++   +  +      E         
Sbjct: 176 IEFYDEKKSF-------RESWYFEDGLKSYLDDAAQDLDTLLEDPIICNKEGD-IQAVDF 227

Query: 303 EWAIA-WCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISD 360
               +    +N    +Y N I T +GG+H +G +      IK++ +      + I + SD
Sbjct: 228 IINWSLTPSKNKLEETYVNLIPTQQGGSHLNGFKSGFLEAIKEFCDYRNLIPKGIKLNSD 287

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D++  A+ ++S  ++ P+FAGQTK +L S D    V +  +D    +L  +  E  K+ +
Sbjct: 288 DVIKDAIFVISSKMQNPQFAGQTKERLDSKDHASFVSSTTKDLVSIWLNTHTEEGEKIAD 347

Query: 421 WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
             I  ++ R +        +   I+   LPGKL+DC+    + TELF+VEGDSAGGSAKQ
Sbjct: 348 LAISSAQSRAKASVNVVRKK--VIKGPALPGKLSDCNSQDLNETELFLVEGDSAGGSAKQ 405

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           AR R+ QA++PLRGKILN     S  I  +Q+I +L  A+G    S      LRY K+ I
Sbjct: 406 ARERAFQAIMPLRGKILNTWDLESTDIIKSQEIKNLSTAIGVIPGSDDL-SSLRYGKICI 464

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKI 600
           + DAD DG HI++LL   F +    L+++  +F+  PPLFRI  G +  YA DE+ K+ I
Sbjct: 465 LADADSDGLHISTLLCALFLRHFRPLVKEGRIFVSMPPLFRIDCGHEVRYALDEKEKEII 524

Query: 601 LEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
           + EF KK GK KI I RFKGLGEM  SQL+ET MD   R L+ + I+   N+       +
Sbjct: 525 VNEFKKKKGKPKINIQRFKGLGEMNPSQLRETVMDPQSRKLVNLTISSSDNANSVMDLLL 584

Query: 660 NKLMGTKADERFKFIQERASFID 682
           +K    ++ +R ++++++ S  +
Sbjct: 585 SK---KRSSDRKEWLEKKGSLAE 604


>gi|257461146|ref|ZP_05626244.1| DNA gyrase, B subunit [Campylobacter gracilis RM3268]
 gi|257441520|gb|EEV16665.1| DNA gyrase, B subunit [Campylobacter gracilis RM3268]
          Length = 770

 Score =  465 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 233/569 (40%), Positives = 335/569 (58%), Gaps = 20/569 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY AS+I++L+GLE VR RPGMYIG T+   LHH+  EV+DN++DE +AGY + I+V +
Sbjct: 3   QNYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVDNSIDEAMAGYCDTIDVEI 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV+ HP         ++LT LHAGGKFD  TY++SGGLHGVG+SV
Sbjct: 63  TSEGSCIVSDNGRGIPVDIHP-TEKIPAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS +L  T+ R   I+ Q+F++GIP + LEK  K  N+ GT I F PD +IF     
Sbjct: 122 VNALSKKLVATIKRDGNIYRQEFAKGIPTTELEKI-KTTNRTGTTIEFWPDGEIFE-ILE 179

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L K  +  AYL+ ++   +  ++           E F+F GGL++++     N++
Sbjct: 180 FDDEILSKRFRELAYLNPKITINFKDNR-------TGRDEHFHFEGGLESFVNDM--NKA 230

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
              S+  +            V++A+ + E     + S+ N I T +GGTHE+G R  LTR
Sbjct: 231 PAISKAVSFSDSADDVM---VDFALMYNETYNENLLSFVNNIKTPDGGTHEAGFRAGLTR 287

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  Y        ++   I  DD+    + ++SV + EP+F GQTK KL S   +  V+ 
Sbjct: 288 AITNYVAANAAAREKDTKITGDDVREGLIAVISVKVPEPQFEGQTKGKLGSSYVKPIVQK 347

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE--VNRKTAIRKLRLPGKLADC 456
              +    Y  +NPIEA  ++   +  +  R   +K R+    +        LPGKLADC
Sbjct: 348 MAFEVLSKYFEENPIEARAIMNKALLAARGREAAKKARDLTRKKDNINSVGTLPGKLADC 407

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
               A  +E+++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  ++I  +++I ++
Sbjct: 408 QSKDASISEIYLVEGDSAGGSAKQGRDRVFQAILPLRGKILNVEKARLDRILQSEEIKNM 467

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A GC    ++ EE LRY K+IIMTDADVDG+HI +LLLTFF++ +  ++E  +++L  
Sbjct: 468 ITAFGCGIGEEFNEEKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFLRPIVENGYVYLAQ 527

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFK 605
           PPLFR  +G K +Y  DE+   + L E  
Sbjct: 528 PPLFRYKKGKKEIYLKDEKALSEFLIETG 556



 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 4/91 (4%)

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
           +   +IL+E +K  K    I R+KGLGEM   QL ET M    R LL++ I       + 
Sbjct: 683 KDFIEILDEIEKSSKKGAYIQRYKGLGEMNPEQLWETTMSPENRRLLKISI----ADAQS 738

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
             D+ N  MG + + R  +IQ+ A  +  + 
Sbjct: 739 ASDTFNLFMGDEVEPRRNYIQDHAKDVKHLD 769


>gi|260774538|ref|ZP_05883451.1| DNA gyrase subunit B [Vibrio metschnikovii CIP 69.14]
 gi|260610444|gb|EEX35650.1| DNA gyrase subunit B [Vibrio metschnikovii CIP 69.14]
          Length = 781

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 211/543 (38%), Positives = 326/543 (60%), Gaps = 17/543 (3%)

Query: 64  MYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122
           MYIG TD+   LHH+  EV+DN++DE +AG+   I V++  +  ++V D+GRGIP E H 
Sbjct: 1   MYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIVVTIHEDNSVSVSDDGRGIPTELHT 60

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
           +  N S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q
Sbjct: 61  E-ENVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHTQ 119

Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
            +  G+P +PL        + GT + F P  + F +   F    L K  +  ++L+  V 
Sbjct: 120 TYRHGVPQAPLAVVGDT-ERTGTTLRFWPSAETFTNI-EFHYDILAKRLRELSFLNSGVS 177

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
                ++E        + + F + GG++ ++     N++ I  ++F    +++     +V
Sbjct: 178 IRLQDEREAD------KHDHFMYEGGIRAFVTHLNRNKTPIHDKVFHFNHDRED--GTSV 229

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359
           E A+ W +     I  + N I   +GGTH +G R ALTR +  Y E      K   +   
Sbjct: 230 EVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNTYMEKEGYSKKAKTATSG 289

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD       ++SV + +P+F+ QTK KLVS + +  VE+A+ +  + +L ++P EA  + 
Sbjct: 290 DDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKAAVESAMGEKLNEFLAEHPSEAKMVC 349

Query: 420 EWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
             +I+ +  R   RK R    RK A+    LPGKLADC +     +EL+IVEGDSAGGSA
Sbjct: 350 SKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSA 409

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537
           KQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  
Sbjct: 410 KQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHN 469

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++  PPL+++ +G +  Y  DE+  
Sbjct: 470 IIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVKKGKQEQYIKDEDAM 529

Query: 598 QKI 600
            + 
Sbjct: 530 TQY 532



 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
             L+   K  +  + I R+KGLGEM   QL ET MD   R +++V I   +       + 
Sbjct: 698 AALDWLIKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMMQVTIEDAVG----ADEL 753

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
              LMG + + R  FI+  A  + ++ 
Sbjct: 754 FTTLMGDQVEPRRAFIENNALRVANLD 780


>gi|114775359|ref|ZP_01450927.1| DNA topoisomerase IV subunit A [Mariprofundus ferrooxydans PV-1]
 gi|114553470|gb|EAU55851.1| DNA topoisomerase IV subunit A [Mariprofundus ferrooxydans PV-1]
          Length = 1441

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 227/671 (33%), Positives = 348/671 (51%), Gaps = 33/671 (4%)

Query: 25  KSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDN 84
           +     ++      S S +YD  SI+ L+G+  +++RP MY   + E   HH+  EV+DN
Sbjct: 9   RQMTKAENYKKGTLSMSADYDIDSIKDLDGIAHIQLRPNMYSDTSKELGCHHIAQEVLDN 68

Query: 85  AMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144
             DE I G+ + I V L+ +  +++ DNGRGIPV+ +      S +E++L+   AGGKFD
Sbjct: 69  CGDEAIGGFCSRIVVELESDNVISITDNGRGIPVKEN--AAGMSGVELVLSKDKAGGKFD 126

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR- 203
           +  Y++SGGLHGVGI+V NALS  L  TV R    F+ +F  G  +  L++   V  +  
Sbjct: 127 HDAYKVSGGLHGVGITVTNALSSWLEATVKRDGGEFTMRFENGRAVDKLKQVGTVGPRTH 186

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+I F P+PK +     F   ++ +    KA L   ++  +        K      E F
Sbjct: 187 GTQIRFSPNPKYYESP-KFRVQQVRQQAMDKAILIPGLEVIF--------KAPGLADERF 237

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTIL 323
            F  GL  ++ +++E   +       G  EK   H  + E AI        + SY NTI 
Sbjct: 238 CFKNGLSEFMTSQMEGTPVFEFTGQLGDMEKVHWHFASFEEAI-----PVYVRSYANTIP 292

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAI-----SIISDDLMISAVGILSVFIREPE 378
           T  GGTHE G +  L + +++Y ++    +        I   D+M ++   LSV+I++  
Sbjct: 293 TPLGGTHEKGFQAGLIKAVREYIDMRPELKKALGRSTRIAPSDVMANSQLGLSVYIQDIS 352

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
           F GQTK +L S +A + V   + D    +L ++   +   ++ +I+R+  R      +  
Sbjct: 353 FKGQTKQELTSAEASKFVGGVIHDSATLWLNRDAELSDAWVKLIIDRAAARAAAENGKAK 412

Query: 439 NRKTAI--RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
                    +  LPGKL DC  N    TEL++VEGDSAGGSAKQA +R  QA+ PL+GKI
Sbjct: 413 KVDRKTFTGRTPLPGKLLDCRSNDIEHTELYLVEGDSAGGSAKQANDRDLQAIFPLKGKI 472

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556
           LN     SE   N++ + DL+ A+G         E  RY K+++MTDAD+DG+HI +LL 
Sbjct: 473 LNCEGVTSEDASNSEAVADLITAIGTGIGEHCDIEKRRYGKIVVMTDADIDGSHIQTLLF 532

Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616
           TFF+++M  ++E   ++++ PPL+ +T G +  YA  E+    +       GK KIE  R
Sbjct: 533 TFFWRQMRPMVEAGRVYIVQPPLYGVTIGKQKHYAQSEDELDGLKAMALAEGK-KIEYIR 591

Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ- 675
           +KGLGEM   +LKET MD   R L++V         +     + KLMG  A +R   +  
Sbjct: 592 YKGLGEMNPPELKETCMDYENRVLVQVS----PEDARRMDALMTKLMGDDAGQRRDLLMG 647

Query: 676 ---ERASFIDD 683
              E A F+ D
Sbjct: 648 KEIEDAEFVTD 658


>gi|223038508|ref|ZP_03608802.1| DNA gyrase, B subunit [Campylobacter rectus RM3267]
 gi|222880365|gb|EEF15452.1| DNA gyrase, B subunit [Campylobacter rectus RM3267]
          Length = 769

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 234/571 (40%), Positives = 338/571 (59%), Gaps = 19/571 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY A +I++L+GLE VR RPGMYIG T+   LHH+  EV+DN++DE +AGY + I++ L
Sbjct: 3   QNYGAENIKVLKGLEAVRKRPGMYIGDTNISGLHHMIYEVVDNSIDEAMAGYCDTIDIEL 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   + DNGRGIPV+ HP     S   ++LT LHAGGKFD  TY++SGGLHGVG+SV
Sbjct: 63  TREGSAIISDNGRGIPVDMHP-TEKISAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS +L V + R   +  Q+FS+GIP S LE   K  N+ GT++ F PD  IF     
Sbjct: 122 VNALSKKLVVNIKRDGKLHRQEFSKGIPQSDLEII-KTTNRTGTQVEFWPDDSIFEVM-E 179

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L K  +  AYLS ++   +   +           E F++ GGL++++    +N +
Sbjct: 180 FDDEILTKRFRELAYLSPKITINFKDQR-------NGRNESFHYEGGLESFVTDLNKNEA 232

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340
           +  +  F+G     G     V++A+ + +   E   S+ N I T +GGTHE+G R  LTR
Sbjct: 233 VSKAVSFSG-----GEEDVLVDFALMYNDTYSENLLSFVNNIKTPDGGTHEAGFRAGLTR 287

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  Y        ++   I  +D+    + ++SV + EP+F GQTK KL S   +  V+ 
Sbjct: 288 VITNYIAANAAAREKDTKITGEDIREGLIAVISVKVPEPQFEGQTKGKLGSSYVKPIVQK 347

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            + +    Y  +NPIEA  ++E  +  +  R   +K R+   +K  +    LPGKLADC 
Sbjct: 348 MVFEVLSKYFEENPIEARAIMEKALMAARGREAAKKARDLTRKKEGLSIGTLPGKLADCQ 407

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  +  +KI  + +I +++
Sbjct: 408 SKDPTISELYLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSRLDKILKSDEIKNMI 467

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALGC    ++  E LRY K+IIMTDADVDG+HI +LLLTFF++ ++ ++E  H++L  P
Sbjct: 468 TALGCGIGDEFDSERLRYHKIIIMTDADVDGSHIQTLLLTFFFRFLHKVVENGHIYLAQP 527

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           PL+R  +G K +Y  DE    + L E    G
Sbjct: 528 PLYRYKKGKKEIYLKDERALNEFLIETGIEG 558



 Score =  133 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +LEE +K+ K    I R+KGLGEM   QL ET M+   R LL++ IN  +       D+
Sbjct: 686 DVLEEIEKNAKKGAYIQRYKGLGEMNPDQLWETTMNPENRRLLKININDAI----SASDT 741

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            N  MG + + R  +IQE A  +  + 
Sbjct: 742 FNLFMGDEVEPRRNYIQEHAKDVKHLD 768


>gi|98991106|gb|ABF60571.1| DNA gyrase subunit B [Spiroplasma melliferum KC3]
          Length = 558

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 230/567 (40%), Positives = 330/567 (58%), Gaps = 14/567 (2%)

Query: 67  GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           G T+ + LHHL  E++DN++DEV+A +AN I++ L+ +  +TV+DNGRGIP+E HPK   
Sbjct: 1   GATNARGLHHLVWEIVDNSIDEVLANFANKIKIILNKDESITVIDNGRGIPIEIHPK-TK 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            STLE + T LHAGGKFD++TY+ISGGLHGVG SVVNALS  L V V + N  +  +F  
Sbjct: 60  VSTLETVFTILHAGGKFDSNTYKISGGLHGVGASVVNALSKYLKVEVRKNNKKYVMEFHN 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  +    K+    ++ GT +TF PD KIF +   F  + +    +  A+L+  ++    
Sbjct: 120 GGQILTPIKEVGSTSETGTTVTFLPDEKIFKETTIFSFSTIQNRIKQLAFLNKGLEISLV 179

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +E  E+    +   + F  G+K Y+    +      +++F  +  +       VE+ +
Sbjct: 180 DLREEDEE----KTVLYQFNNGIKDYVLELNKTIGTPLNDVFYVEGIEDNI---VVEFGL 232

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR---AISIISDDL 362
            + +     I S+CN I T EGGTHE G R+A+ R I  Y +               DD+
Sbjct: 233 QYNDNYSENIFSFCNNINTHEGGTHEEGARLAIVREINNYFKNINKNNKGNEDKFTWDDI 292

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
                 I+S+   +P++ GQTKTKL + + ++ V N +      YL++NP +A K++E +
Sbjct: 293 KEGMTIIISIRHPDPQYEGQTKTKLGNSEVKKIVSNIVGKGLSSYLLENPEDAKKIIEKI 352

Query: 423 IERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
               + R+  ++ +E   RKT +    LPGKLADC    A   EL+IVEGDSAGGSAK  
Sbjct: 353 SLSLKARIAAQRAKETTRRKTVMDSFSLPGKLADCETKDAKIAELYIVEGDSAGGSAKSG 412

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541
           RNR  QA+LPLRGKILNV  A   KI  N +I  ++ ALG   +  + ++ LRY+KVIIM
Sbjct: 413 RNRKFQAILPLRGKILNVEKAKQIKIFENNEINSIITALGAGIKDNFNDKKLRYQKVIIM 472

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           TDADVDGAHI  LLLTFFY+ M DLIE  ++++  PPL++I  G +  YA+ +   +   
Sbjct: 473 TDADVDGAHIRILLLTFFYRYMKDLIENGNIYIAQPPLYKIQNGNQIRYAYSDNELELYK 532

Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQL 628
           EE  K  K    I R+KGLGEM   QL
Sbjct: 533 EELLKQNK-NYTIQRYKGLGEMNPEQL 558


>gi|319779376|ref|YP_004130289.1| Topoisomerase IV subunit B [Taylorella equigenitalis MCE9]
 gi|317109400|gb|ADU92146.1| Topoisomerase IV subunit B [Taylorella equigenitalis MCE9]
          Length = 630

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 235/646 (36%), Positives = 340/646 (52%), Gaps = 41/646 (6%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MY   T      H+  EVIDN+ DE +AG+A  I V+L+ +  +TV D+GRGIPV  HP+
Sbjct: 1   MY---TRTDNPLHIIQEVIDNSADEALAGFAKKISVTLNEDLSVTVEDDGRGIPVGLHPE 57

Query: 124 FPNKSTLEIILTTLHAGGKFDNS---TYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
             +   +EI+ T LHAGGKF+      Y  SGGLHGVG+SV NALS  L VTV R   + 
Sbjct: 58  -EHVPVVEIVFTRLHAGGKFNKKDGGAYAFSGGLHGVGVSVTNALSTRLEVTVTRDMGVH 116

Query: 181 SQKFSRG--IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLS 238
              F  G  +     +     + K GT +   PD K F          L+ + +SKA L 
Sbjct: 117 QLVFENGGDVATPLEKIDIAPKRKSGTVVRVWPDSKYFDSSV-IPINELIHLLRSKAVLL 175

Query: 239 GRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS----EIFTGKTEK 294
             ++     +K         EK ++ +  GL +YL  +L+   L+      + +  +  +
Sbjct: 176 PGIEVSLKVEK-------TGEKYKWQYESGLISYLSEELDGSELLIPLFSGQDYVQEGHE 228

Query: 295 KGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-K 352
                    W +AW +E P    SY N I T  GGTHESGLR  L   +K +AE+     
Sbjct: 229 SFELGEGASWVVAWSQEGPLVRESYVNLIPTTNGGTHESGLREGLYLALKSFAEMHSLIP 288

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
           + I ++ +DL   A  +LS  + +P+F GQ K +L S DA R V + ++  F+ +L  N 
Sbjct: 289 KGIKLLPEDLFSRASFVLSAKVLDPQFQGQVKERLNSRDALRLVSSFVKTSFELWLNSNV 348

Query: 413 IEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
            E  KL E+ I++++ R +    ++V ++ +     LPGKL DC  N A  TE+F+VEGD
Sbjct: 349 DEGKKLAEFAIKQAQSRTK--SAQKVEKRKSSGVAVLPGKLTDCESNDASRTEVFLVEGD 406

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           SAGGSAK+ R++  QAVLPLRGK+LN      +++ +N++I D+  A+G          D
Sbjct: 407 SAGGSAKKGRDKEYQAVLPLRGKVLNSWEVDKDQLFSNKEIHDISVAIGVDPHCPTDFPD 466

Query: 533 ---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT---QGT 586
              LRY ++ I++DADVDG+HI  LLLT FY+    L+E   +F+  PPLFRI    QG 
Sbjct: 467 MSGLRYRRICILSDADVDGSHIQVLLLTLFYKHFPRLVENGFVFISQPPLFRIDVPAQGK 526

Query: 587 ---KSVYAHDEEHKQKILEEFKKHGKGK---IEISRFKGLGEMLASQLKETAMDANKRTL 640
              +  Y  D E  Q   ++       K   + ISRFKGLGEM A QL ET M+ + R L
Sbjct: 527 RPARKFYCLDSEELQGTKDKLINKENIKETSLTISRFKGLGEMSAEQLWETTMNPDTRRL 586

Query: 641 LRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQERASFIDDVG 685
           L+V      NSL +     + LMG  ++  R   I+E+ +    + 
Sbjct: 587 LQVSY--GSNSLDELNRIFDTLMGKSESASRRALIEEKGNLA-QLD 629


>gi|149919818|ref|ZP_01908295.1| DNA gyrase subunit B [Plesiocystis pacifica SIR-1]
 gi|149819425|gb|EDM78856.1| DNA gyrase subunit B [Plesiocystis pacifica SIR-1]
          Length = 872

 Score =  463 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 215/602 (35%), Positives = 324/602 (53%), Gaps = 18/602 (2%)

Query: 10  STLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT 69
           S  P  S+  S + ++    P +           YD SSI  LEGLE VR RPGMYIG T
Sbjct: 6   SQAPSASETESPEAQEGQPTPAADGPPPA-----YDESSISHLEGLEAVRKRPGMYIGDT 60

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP-KFPNKS 128
           D   LH +  E++DN++DE +AG+   I++ +  +  ++V D+GRGIP      +     
Sbjct: 61  DVTGLHKMVFEILDNSIDEALAGHCKQIQIVIHEDESISVEDDGRGIPTGPMEVEGKMVP 120

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
               + T LH GGKFDN+ Y++SGGLHGVG++VVNALSD L + + R+  +F+ +F RG 
Sbjct: 121 AAIAVFTKLHVGGKFDNAAYKVSGGLHGVGVTVVNALSDWLELEIKREGKVFTARFERGE 180

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
               L+   +    RGT++TF  DP I+      D   L    +  +YL+  V    +  
Sbjct: 181 VARELDVVGET-EARGTKVTFHADPLIYTG-VRVDFDTLSSRFRELSYLTEGVNITLTDL 238

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL---ISSEIFTGKTEKKG-THRGTVEW 304
           +          ++ F   GG+ ++++     R+    +         E +G  H   V+ 
Sbjct: 239 R-PTINGEKKREQSFDGEGGVASFVELLTAKRTRIGAMIELRSQVPFEFEGQDHELGVQV 297

Query: 305 AIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDD 361
           A+ W +   E+   Y N I   +GGTH +GLR +LTR +  YA      +     +  +D
Sbjct: 298 ALQWTDAYHEMVHCYTNNIANRDGGTHLTGLRTSLTRVVNGYAGDKNLLKGHKGSLAGED 357

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-E 420
           +    V I+SV   +P+F  QTK KLVS +    V  A+ +    +  + P +A  ++ +
Sbjct: 358 VREGLVAIISVKHPDPKFNSQTKEKLVSSEVTALVGTAVTEALSRHFEEKPKDAKLVVEK 417

Query: 421 WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
            ++        R+ +  + RK  +  L LPGKLADC +      ELFIVEGDSAGGSAKQ
Sbjct: 418 ALLAARARAAARKARETITRKGVLDGLSLPGKLADCQEKDPELAELFIVEGDSAGGSAKQ 477

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVI 539
            R+R  QA+LPLRGKILNV  A  +KI ++Q+I+ L+ ALG          + LRY K+I
Sbjct: 478 GRDRKVQAILPLRGKILNVEKARIDKILSSQEIVTLITALGTGIGEDTYSIDKLRYHKII 537

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599
           IMTDADVDG+HI +LLLTFF++   ++IE+ +L++  PPL+++  G K  Y  +E    +
Sbjct: 538 IMTDADVDGSHIRTLLLTFFFRHFVEIIERGYLYVAQPPLYKVKAGKKERYIKNEGALDE 597

Query: 600 IL 601
            +
Sbjct: 598 FI 599



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 12/109 (11%)

Query: 580 FRITQGTKSVYAHDEEH---KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
            ++ +   ++            ++++   + G+  + I R+KGLGEM   QL ET MD  
Sbjct: 772 IKLRKKGDTI-----AEPKSLMQVIDHVGEVGRSGLSIQRYKGLGEMNPDQLWETTMDPE 826

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            R LL+++I           +    LMG +   R +FI E A    ++ 
Sbjct: 827 NRELLQIKI----AEKDIADEVFTVLMGDEVAPRREFITENALNTRNLD 871


>gi|154148768|ref|YP_001405626.1| DNA gyrase subunit B [Campylobacter hominis ATCC BAA-381]
 gi|153804777|gb|ABS51784.1| DNA gyrase, B subunit [Campylobacter hominis ATCC BAA-381]
          Length = 768

 Score =  463 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 241/586 (41%), Positives = 341/586 (58%), Gaps = 24/586 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y A +I++L+GLE VR RPGMYIG T+   LHH+  EVIDN++DE +AGY + + + L 
Sbjct: 2   EYGAGNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVIDNSIDEAMAGYCDTVNIRLT 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
             G   + DNGRGIP + HP         ++LT LHAGGKFD  TY++SGGLHGVG+SVV
Sbjct: 62  KEGSAVITDNGRGIPTDIHP-TEKIPAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVSVV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L  T+ R   I+ Q+FS+GIP++ LE         GT+I F PD +IF     F
Sbjct: 121 NALSVRLIATIKRNGKIYRQEFSKGIPVNNLEIIGDTEE-TGTQIEFWPDSEIFE-ILEF 178

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L K  +  AYL+ ++   +  ++           E F+F GGL++++     NR +
Sbjct: 179 DDEILSKRFKELAYLNPKITINFKDER-------TGRDECFHFEGGLESFVTDLNHNRQI 231

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRG 341
           +S  +              V++A+ + E   E   S+ N I T EGGTHE+G R  LTR 
Sbjct: 232 VSKSVSF----SDTIDDVAVDFALLYNETYSENLLSFVNNIHTPEGGTHEAGFRAGLTRA 287

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  Y        ++   I  DD+    + I+SV + EP+F GQTK KL S   +  V+  
Sbjct: 288 ITTYINANASAKEKDTKITGDDVREGLIAIISVKVPEPQFEGQTKGKLGSSYVKPIVQKM 347

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
             D    Y  +NPIEA  ++   +  +  R   +K R+   +K +     LPGKLADC  
Sbjct: 348 TFDVLSKYFEENPIEAKAVMNKALLAARGREAAKKARDLTRKKESFGVGTLPGKLADCQS 407

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
             A  +E+++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  EKI  +++I +++ 
Sbjct: 408 KDASISEIYLVEGDSAGGSAKQGRDRVFQAILPLRGKILNVEKAYLEKILRSEEIKNMIT 467

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A GC   S++ EE LRY K+IIMTDADVDG+HI +LLLTFF++ +  ++E+ +++L  PP
Sbjct: 468 AFGCGVGSEFDEEKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFLKPIVEKGYVYLAQPP 527

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
           LFR  +G K +Y  DE+   + L +        IE+  F+G+GE  
Sbjct: 528 LFRYKKGKKEIYLKDEKALSEFLIQ------TGIEVGEFEGIGEND 567



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 4/91 (4%)

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
           +   +IL++ +K+ K    I R+KGLGEM   QL ET M+   R L+++ I+      + 
Sbjct: 681 KDFIEILDDIEKNAKKGAYIQRYKGLGEMNPEQLWETTMNPENRRLVKISISD----AES 736

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
             D+ N  MG + + R  +IQ  A  +  + 
Sbjct: 737 ASDTFNLFMGDEVEPRRDYIQTHAKDVKHLD 767


>gi|188527660|ref|YP_001910347.1| DNA gyrase subunit B [Helicobacter pylori Shi470]
 gi|188143900|gb|ACD48317.1| DNA gyrase subunit B [Helicobacter pylori Shi470]
          Length = 773

 Score =  463 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 230/576 (39%), Positives = 337/576 (58%), Gaps = 17/576 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY + SI++L+GLE VR RPGMYIG T+   LHH+  EV+DNA+DE +AG+ + I ++L
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVGGLHHMVYEVVDNAVDESMAGFCDTINITL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV+ HP         ++LT LHAGGKFDN TY++SGGLHGVG+SV
Sbjct: 62  TDEGSCIVEDNGRGIPVDIHP-TEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDK 219
           VNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +   + GT I F PD  +    
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F A  L K  +  AYL+  +K  +  +K          +E +++  GLK +++   + 
Sbjct: 181 -EFQADILQKRFKEMAYLNDGLKISFKEEK-------TQLQETYFYEDGLKQFVKDSAK- 231

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
           + L++  I     +++      V  A A  + N    S+ N I T EGGTHE+G ++ L+
Sbjct: 232 KELLTPIISFKSMDEETRTSIEVALAYAD-DYNENTLSFVNNIKTSEGGTHEAGFKMGLS 290

Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + I +Y +     R    IS+D+    + ++S+ + EP F GQTK+KL S  A+  V   
Sbjct: 291 KAILQYIDGNIKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKL 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + D    +L +NP EA  +    +  ++ R   +K RE   +K  +    LPGKLADC  
Sbjct: 351 VYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  +   KI  +++I +++ 
Sbjct: 411 KDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMIT 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A GC  +  +  E LRY K+IIMTDADVDG+HI +LL+TFFY+ +  LIEQ H+++   P
Sbjct: 471 AFGCGIQESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           L++  +G   +Y  D       L E   HG   ++I
Sbjct: 531 LYKYKKGKTEIYLKDSVALDHFLIE---HGINSVDI 563



 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
             LEE + H K    I R+KGLGEM  + L ET M    R+L++++I      L+ T   
Sbjct: 690 AFLEEVENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIED----LEKTDAV 745

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            +  MG + + R  FIQ  A  +  + 
Sbjct: 746 FSLCMGDEVEPRRAFIQAHAKDVKQLD 772


>gi|15645128|ref|NP_207298.1| DNA gyrase subunit B [Helicobacter pylori 26695]
 gi|2501294|sp|P55992|GYRB_HELPY RecName: Full=DNA gyrase subunit B
 gi|2313611|gb|AAD07566.1| DNA gyrase, sub B (gyrB) [Helicobacter pylori 26695]
          Length = 773

 Score =  463 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 229/576 (39%), Positives = 335/576 (58%), Gaps = 17/576 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY + SI++L+GLE VR RPGMYIG T+   LHH+  EV+DNA+DE +AG+ + I ++L
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVGGLHHMVYEVVDNAVDESMAGFCDTINITL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV+ HP         ++LT LHAGGKFDN TY++SGGLHGVG+SV
Sbjct: 62  TDEGSCIVEDNGRGIPVDIHP-TEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDK 219
           VNALS  L +T+ ++  I+ Q+F +GIP S LE   K +   + GT I F PD  +    
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPTSELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F A  L K  +  AYL+  +K  +  +K          +E +++  GLK +++   + 
Sbjct: 181 -EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLQETYFYEDGLKQFVKDSAK- 231

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
           + L++  I     +++      V  A A  + N    S+ N I T EGGTHE+G ++ L+
Sbjct: 232 KELLTPIISFKSMDEETRTSIEVALAYAD-DYNENTLSFVNNIKTSEGGTHEAGFKMGLS 290

Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + I +Y       +    IS+D+    + ++S+ + EP F GQTK+KL S  A+  V   
Sbjct: 291 KAILQYIGNNIKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKL 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + D    +L +NP EA  +    +  ++ R   +K RE   +K  +    LPGKLADC  
Sbjct: 351 VYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  +   KI  +++I +++ 
Sbjct: 411 KDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMIT 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A GC  +  +  E LRY K+IIMTDADVDG+HI +LL+TFFY+ +  LIEQ H+++   P
Sbjct: 471 AFGCGIQESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           L++  +G   +Y  D       L E   HG   ++I
Sbjct: 531 LYKYKKGKTEIYLKDSVALDHFLIE---HGINSVDI 563



 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
             LEE + H K    I R+KGLGEM  + L ET M    R+L++++I      L+ T   
Sbjct: 690 AFLEEVENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIED----LEKTDAV 745

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            +  MG + + R  FIQ  A  +  + 
Sbjct: 746 FSLCMGDEVEPRRAFIQAHAKDVKQLD 772


>gi|217032914|ref|ZP_03438390.1| hypothetical protein HPB128_10g6 [Helicobacter pylori B128]
 gi|298736181|ref|YP_003728707.1| DNA gyrase, B subunit [Helicobacter pylori B8]
 gi|216945363|gb|EEC24033.1| hypothetical protein HPB128_10g6 [Helicobacter pylori B128]
 gi|298355371|emb|CBI66243.1| DNA gyrase, B subunit [Helicobacter pylori B8]
          Length = 773

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 229/576 (39%), Positives = 337/576 (58%), Gaps = 17/576 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY + SI++L+GLE VR RPGMYIG T+   LHH+  EV+DNA+DE +AG+ + I ++L
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVGGLHHMVYEVVDNAVDESMAGFCDTINITL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV+ HP         ++LT LHAGGKFDN TY++SGGLHGVG+SV
Sbjct: 62  TDEGSCIVEDNGRGIPVDIHP-TEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDK 219
           VNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +   + GT I F PD  +    
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F A  L K  +  AYL+  +K  +  +K          +E +++  GLK +++   + 
Sbjct: 181 -EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLQETYFYEDGLKQFVKDSTK- 231

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
           + L++  I     +++      V  A A  + N    S+ N I T EGGTHE+G ++ L+
Sbjct: 232 KELLTPIISFKSMDEETCTSIEVALAYAD-DYNENTLSFVNNIKTSEGGTHEAGFKMGLS 290

Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + I +Y +     +    IS+D+    + ++S+ + EP F GQTK+KL S  A+  V   
Sbjct: 291 KAILQYIDNNIKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKL 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + D    +L +NP EA  +    +  ++ R   +K RE   +K  +    LPGKLADC  
Sbjct: 351 VYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  +   KI  +++I +++ 
Sbjct: 411 KDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMIT 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A GC  +  +  E LRY K+IIMTDADVDG+HI +LL+TFFY+ +  LIEQ H+++   P
Sbjct: 471 AFGCGIQESFEIEKLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           L++  +G   +Y  D       L E   HG   ++I
Sbjct: 531 LYKYKKGKTEIYLKDSVALDHFLIE---HGINSVDI 563



 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
             LEE + H K    I R+KGLGEM  + L ET M    R+L++++I      L+ T   
Sbjct: 690 AFLEEVENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIED----LEKTDAI 745

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            +  MG + + R  FIQ  A  +  + 
Sbjct: 746 FSLCMGDEVEPRRAFIQAHAKDVKQLD 772


>gi|108562902|ref|YP_627218.1| DNA gyrase subunit B [Helicobacter pylori HPAG1]
 gi|107836675|gb|ABF84544.1| DNA gyrase subunit B [Helicobacter pylori HPAG1]
          Length = 773

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 229/576 (39%), Positives = 337/576 (58%), Gaps = 17/576 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY + SI++L+GLE VR RPGMYIG T+   LHH+  EV+DNA+DE +AG+ + I ++L
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNIGGLHHMVYEVVDNAVDESMAGFCDTINITL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV+ HP         ++LT LHAGGKFDN TY++SGGLHGVG+SV
Sbjct: 62  TSEGSCIVEDNGRGIPVDIHP-TEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDK 219
           VNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +   + GT I F PD  +    
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F A  L K  +  AYL+  +K  +  +K          +E +++  GLK +++   + 
Sbjct: 181 -EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLQETYFYKDGLKQFVKDSAK- 231

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
           + L++  I     +++      V  A A  + N    S+ N I T EGGTHE+G ++ L+
Sbjct: 232 KELLTPVIAFKSMDEETRTSIEVALAYAD-DYNENTLSFVNNIKTSEGGTHEAGFKMGLS 290

Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + I +Y +     +    IS+D+    + ++S+ + EP F GQTK+KL S  A+  V   
Sbjct: 291 KAILQYIDNNIKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKL 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + D    +L +NP EA  +    +  ++ R   +K RE   +K  +    LPGKLADC  
Sbjct: 351 VYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  +   KI  +++I +++ 
Sbjct: 411 KDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMIT 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A GC  +  +  E LRY K+IIMTDADVDG+HI +LL+TFFY+ +  LIEQ H+++   P
Sbjct: 471 AFGCGIQESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           L++  +G   +Y  D       L E   HG   ++I
Sbjct: 531 LYKYKKGKTEIYLKDSVALDHFLIE---HGINSVDI 563



 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
             LEE + H K    I R+KGLGEM  + L ET M    R+L++++I      L+ T   
Sbjct: 690 AFLEEVENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIED----LEKTDAV 745

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            +  MG + + R  FIQ  A  +  + 
Sbjct: 746 FSLCMGDEVEPRRAFIQAHAKDVKQLD 772


>gi|317012319|gb|ADU82927.1| DNA gyrase subunit B [Helicobacter pylori Lithuania75]
          Length = 773

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 227/576 (39%), Positives = 335/576 (58%), Gaps = 17/576 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY + SI++L+GLE VR RPGMYIG T+   LHH+  EV+DNA+DE +AG+ + I ++L
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVGGLHHMVYEVVDNAVDESMAGFCDTINITL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV+ HP         ++LT LHAGGKFDN TY++SGGLHGVG+SV
Sbjct: 62  TDEGSCIVEDNGRGIPVDIHP-TEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDK 219
           VNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +   + GT I F PD  +    
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSTKESGTTIEFFPDESVMEVV 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F A  L K  +  AYL+  +K  +  +K          +E +++  GLK +++   + 
Sbjct: 181 -EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLQETYFYKDGLKQFVKDSAK- 231

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
           + L++  I     +++      V  A    + N    S+ N I T EGGTHE+G ++ L+
Sbjct: 232 KELLTPIISFKSMDEETRTSIEVALAYTD-DYNENTLSFVNNIKTSEGGTHEAGFKMGLS 290

Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + I +Y +     +    IS+D+    + ++S+ + EP F GQTK+KL S   +  V   
Sbjct: 291 KAILQYIDNNIKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYVRALVSKL 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + D    +L +NP EA  +    +  ++ R   +K RE   +K  +    LPGKLADC  
Sbjct: 351 VYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  +   KI  +++I +++ 
Sbjct: 411 KDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMIT 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A GC  +  +  E LRY K+IIMTDADVDG+HI +LL+TFFY+ +  LIEQ H+++   P
Sbjct: 471 AFGCGIQESFDIEKLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           L++  +G   +Y  D       L E   HG   ++I
Sbjct: 531 LYKYKKGKTEIYLKDSVALDHFLIE---HGINSVDI 563



 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
             LEE + H K    I R+KGLGEM  + L ET M    R+L +++I      L+ T   
Sbjct: 690 AFLEEVENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLFKLKIED----LEKTDAV 745

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            +  MG + + R  FIQ  A  +  + 
Sbjct: 746 FSLCMGDEVEPRRAFIQAHAKDVKQLD 772


>gi|296105501|ref|YP_003617201.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Legionella pneumophila 2300/99 Alcoy]
 gi|295647402|gb|ADG23249.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Legionella pneumophila 2300/99 Alcoy]
 gi|307608754|emb|CBW98136.1| DNA gyrase, subunit B [Legionella pneumophila 130b]
          Length = 779

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 218/551 (39%), Positives = 337/551 (61%), Gaps = 19/551 (3%)

Query: 64  MYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122
           MYIG TD+   LHH+  EV+DN++DE +AGY   I V++  +  +TV D+GRGIPV+ H 
Sbjct: 1   MYIGDTDDGTGLHHMVFEVVDNSIDESLAGYCKEIFVTIHSDESITVKDDGRGIPVDIH- 59

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
           K   KS  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+ELH+ V R   ++ Q
Sbjct: 60  KEEGKSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLLVRRHGKVYEQ 119

Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
            +  G+P SP+ +  +  N  GT+I F+P  + F +   F    L K  +  +YL+  V 
Sbjct: 120 HYRHGVPESPIAETGE-SNSTGTQIWFKPSAETFSNI-EFHYDILAKRLRELSYLNSGVC 177

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
                ++         +K+ F++ GG+K +++   +N++ +   +F+  +EK G     +
Sbjct: 178 IHLFDER-------TQKKDTFHYEGGIKAFVEHLNKNKTPVHPVVFSMTSEKDGI---VI 227

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359
           E A+ W +     I  + N I   +GGTH +G R ALTR +  Y E      K  +S   
Sbjct: 228 ELAMQWNDGYQETIFCFTNNIPQRDGGTHMAGFRAALTRTLNNYIENEGYAKKAKVSPTG 287

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD       +LSV + +P+F+ QTK KLVS + +  VE+ + + F+ +L++NP  A  ++
Sbjct: 288 DDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKPAVESCVAEKFNDFLLENPTAAKSIV 347

Query: 420 EWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
             +I+ +  R   R+ R    RK A+    LPGKLADC +     +EL++VEGDSAGGSA
Sbjct: 348 AKIIDAARAREAARRAREMTRRKGALDIAGLPGKLADCQEKDPSLSELYLVEGDSAGGSA 407

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537
           KQAR+R  QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC     +Y  + +RY +
Sbjct: 408 KQARDRKFQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGPEEYDPDKVRYHR 467

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           +IIMTDADVDG+HI +LLLTFFY++  +L+E+ ++++  PPL+++ +G +  Y  D+E  
Sbjct: 468 IIIMTDADVDGSHIRTLLLTFFYRQTRELLERGYIYIAQPPLYKVKRGKQEQYVKDDEAL 527

Query: 598 QKILEEFKKHG 608
              L +    G
Sbjct: 528 FDYLTQCALDG 538



 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G KS+     E+ +++L       K    I R+KGLGEM   QL ET MD   R +L
Sbjct: 682 IQRGDKSL---PVENFEQVLNWLMDEAKKGQTIQRYKGLGEMNPEQLWETTMDPEVRRML 738

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +       +    LMG   + R  FI+  A   +++ 
Sbjct: 739 QVSIEDAV----AADEIFTTLMGDNVEPRRDFIETNALDAENID 778


>gi|98991108|gb|ABF60572.1| DNA gyrase subunit B [Mesoplasma lactucae ATCC 49193]
          Length = 553

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 218/566 (38%), Positives = 315/566 (55%), Gaps = 18/566 (3%)

Query: 67  GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           G T    LHHL  E++DN++DE +AG A  IEV++  NG + V DNGRGIPV  +     
Sbjct: 1   GSTGVTGLHHLVWEILDNSIDEAMAGEATHIEVTITKNGEVIVQDNGRGIPVGIN-HDTG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           K+ LE++ T LHAGGKFD+ +Y+ISGGLHGVG SVVNALS  + V V +   I+ Q FS 
Sbjct: 60  KTALELVFTQLHAGGKFDSESYKISGGLHGVGASVVNALSLYVDVEVKKNGNIYHQVFSE 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G       +     +  GTR+ F+PDP+IF +   FD   +    +  AYL+  +    +
Sbjct: 120 GGTKETEMEIIGKTDDHGTRVLFKPDPEIFKETVDFDYDTIRNKVKQLAYLNKGITIQLT 179

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +       I +   ++FP G+  Y++     +  I+  +F          +  VE A+
Sbjct: 180 DQR-------IDKTVTYHFPNGIVDYVKETNTGKPAINQTVFYADG---IVEKIEVEIAV 229

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY---AELTQNKRAISIISDDL 362
            W  E   +  S+ N I T +GG HE G + A+ R I +Y    ++ +NK       DD+
Sbjct: 230 QWNAEYNEDSVSFVNNINTRDGGMHEDGFKQAMVRIINRYAAEKDINKNKTPQRYNWDDI 289

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
                 ++S+   +P++ GQTKTKL + DA+  V+  + + F+ YL  NP +A  +++ +
Sbjct: 290 KEGMTSVISIKHTDPQYEGQTKTKLANPDAKIAVDAVVGENFESYLWNNPEDAAAIMDKI 349

Query: 423 IERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
               + R   ++ RE   RKTA+    LPGKLADC+       EL+IVEGDSAGGSAKQ 
Sbjct: 350 QTSQKSRFAAQRAREDTRRKTALDGFSLPGKLADCASKDPEFAELYIVEGDSAGGSAKQG 409

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541
           RN   QA+LPLRGK+LNV      K   NQ+I  ++ A+G   R  +    +RY K++IM
Sbjct: 410 RNSKYQAILPLRGKVLNVEKVQPAKAFTNQEIKTMITAIGAGVREDFDISKIRYGKIVIM 469

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           TDADVDGAHI  LLLTFFY+ M  LI+  ++F+  PPLF+I  G +  YA+ ++      
Sbjct: 470 TDADVDGAHIRILLLTFFYRYMKPLIQNGNVFIAQPPLFKIEAGKQVAYAYTDKELDDFK 529

Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQ 627
               +    +  I R+KGLGEM   Q
Sbjct: 530 N--NEFAGKRYGIQRYKGLGEMDPQQ 553


>gi|15611520|ref|NP_223171.1| DNA gyrase subunit B [Helicobacter pylori J99]
 gi|6647533|sp|Q9ZLX3|GYRB_HELPJ RecName: Full=DNA gyrase subunit B
 gi|4154989|gb|AAD06031.1| DNA GYRASE SUBUNIT B [Helicobacter pylori J99]
          Length = 773

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 230/576 (39%), Positives = 337/576 (58%), Gaps = 17/576 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY + SI++L+GLE VR RPGMYIG T+   LHH+  EV+DNA+DE +AG+ + I ++L
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVGGLHHMVYEVVDNAVDESMAGFCDTINITL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV+ HP         ++LT LHAGGKFDN TY++SGGLHGVG+SV
Sbjct: 62  TEEGSCIVEDNGRGIPVDIHP-TEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDK 219
           VNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +   + GT I F PD  +    
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F A  L K  +  AYL+  +K  +  +K          +E +++  GLK +++   + 
Sbjct: 181 -EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLQETYFYKDGLKQFVKDSAK- 231

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
           + L++  I     +++      V  A A  + N    S+ N I T EGGTHE+G ++ L+
Sbjct: 232 KELLTPIIAFKSMDEETRTSIEVALAYAD-DYNENTLSFVNNIKTSEGGTHEAGFKMGLS 290

Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + I +Y +     +    IS+D+    + ++S+ + EP F GQTK+KL S  A+  V   
Sbjct: 291 KAILQYIDNNIKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKL 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + D    +L +NP EA  +    +  ++ R   +K RE   +K  +    LPGKLADC  
Sbjct: 351 VYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  +   KI  +++I +++ 
Sbjct: 411 KDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMIT 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A GC  +  +  E LRY K+IIMTDADVDG+HI +LL+TFFY+ +  LIEQ H+F+   P
Sbjct: 471 AFGCGIQESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVFIAQAP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           L++  +G   +Y  D       L E   HG   ++I
Sbjct: 531 LYKYKKGKTEIYLKDSVALDHFLIE---HGINSVDI 563



 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
             LEE + + K    I R+KGLGEM  + L ET M    R+L++++I      L+ T   
Sbjct: 690 AFLEEVENYAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIED----LEKTDAV 745

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            +  MG + + R  FIQ  A  +  + 
Sbjct: 746 FSLCMGDEVEPRRAFIQAHAKDVKQLD 772


>gi|85705680|ref|ZP_01036777.1| DNA gyrase subunit B [Roseovarius sp. 217]
 gi|85669670|gb|EAQ24534.1| DNA gyrase subunit B [Roseovarius sp. 217]
          Length = 775

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 208/544 (38%), Positives = 310/544 (56%), Gaps = 16/544 (2%)

Query: 64  MYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122
           MYIG TD+   LHH+  EV+DN +DE +AG+A+ + V++  +  ++V DNGRGIPV+ H 
Sbjct: 1   MYIGDTDDGSGLHHMVYEVVDNGIDEALAGHADAVNVTIHADSSVSVSDNGRGIPVDMH- 59

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
           +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+ L + + R       
Sbjct: 60  EGEGVSAAEVIMTQLHAGGKFDSNSYKVSGGLHGVGVSVVNALSEWLELRIWRNGKEHYA 119

Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
           +F  G  +  L        ++GT + F    + F +   +    L K  +  A+L+  V+
Sbjct: 120 RFEGGFTVESLRVVGDANGRKGTEVRFLASLETFSNL-DYIFETLEKRLRELAFLNSGVR 178

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
                ++        P   E ++ GG+K +++    ++S    E      E+       V
Sbjct: 179 IILRDER-----PTEPLMSELFYEGGVKEFVKYLDRHKSPAMPEPIFITGERDDI---GV 230

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359
           E A+ W +     +  + N I   +GGTH +G R ALTR I  YA+ T    K  ++   
Sbjct: 231 EVAMWWNDSYHETVLPFTNNIPQRDGGTHMAGFRGALTRTINNYAQTTGIAKKEKVTFTG 290

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD       +LSV + +P+F+ QTK KLVS + +  VE  + +    +  +NP  A  ++
Sbjct: 291 DDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGLVNEKLAEWFEENPQIARIIV 350

Query: 420 EWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
             +IE +  R   RK R+   RK  +    L GKL DCS      TELF+VEGDSAGGSA
Sbjct: 351 SKIIEAAHAREAARKARDLTRRKNPMDVNFLAGKLKDCSSKDPSKTELFLVEGDSAGGSA 410

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537
           +  R+R  QAVLPLRGKILNV  A  +++  +Q+I +LV ALG    R ++  + LRY K
Sbjct: 411 QTGRDRGTQAVLPLRGKILNVERARFDRMLGSQEIGNLVMALGTGIGRDEFDIKKLRYHK 470

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           ++IMTDADVDGAHI +LLLTFFY++M +LIE  +L++  PPL+++ +G   VY  D+   
Sbjct: 471 IVIMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQPPLYKVMRGKSEVYLKDQAGL 530

Query: 598 QKIL 601
           +  L
Sbjct: 531 EDYL 534



 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L+   K G+  + + R+KGLGEM   QL ET +D   RTLL+V+I+     + +  D 
Sbjct: 692 DLLDAILKEGEKGLSLQRYKGLGEMNPGQLWETTLDPEARTLLQVKIDD----VAEADDL 747

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R +FIQE A  + ++ 
Sbjct: 748 FTKLMGDVVEPRREFIQENALNVANLD 774


>gi|317010750|gb|ADU84497.1| DNA gyrase subunit B [Helicobacter pylori SouthAfrica7]
          Length = 773

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 232/576 (40%), Positives = 336/576 (58%), Gaps = 17/576 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y + SI++L+GLE VR RPGMYIG T+   LHH+  EV+DNA+DE +AG+ + I ++L
Sbjct: 2   QDYQSHSIKVLKGLEGVRKRPGMYIGDTNVGGLHHMVYEVVDNAVDESMAGFCDTINITL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV  HP         ++LT LHAGGKFDN TY++SGGLHGVG+SV
Sbjct: 62  TDEGSCIVEDNGRGIPVGIHP-TEKIPACTVVLTMLHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN--KRGTRITFRPDPKIFGDK 219
           VNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +N  + GT I F PD  +    
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKNAKESGTTIEFFPDGSVMEVV 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F A  L K  +  AYL+  +K  +  +K          +E +++  GLK +++   + 
Sbjct: 181 -EFQAGILQKRFKEMAYLNDGLKIAFKEEK-------TQLQETYFYEDGLKQFVKDSAK- 231

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
           + L++  I     +++      V  A A  + N    S+ N I T EGGTHE+G ++ L+
Sbjct: 232 KELLTPIISFKSMDEETRTAVEVALAYAD-DYNENTLSFVNNIKTSEGGTHEAGFKMGLS 290

Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + I +Y +     +    IS+D+    V I+S+ + EP F GQTK+KL S  A+  V   
Sbjct: 291 KAILQYIDHNIKTKESRPISEDIKEGLVAIVSLKMSEPLFEGQTKSKLGSSYARTLVSKL 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + D    +L +NP EA  +    +  ++ R   RK RE   +K  +    LPGKLADC  
Sbjct: 351 VYDKIHQFLEENPNEAKIIANKALLAAKAREASRKARELTRKKDNLSVGTLPGKLADCQS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  +   KI  +++I +++ 
Sbjct: 411 KDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMIT 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A GC  +  +  E LRY K+IIMTDADVDG+HI +LL+TFFY+ +  LIEQ H+++   P
Sbjct: 471 AFGCGIQESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           L++  +G   +Y  D       L E   HG   + I
Sbjct: 531 LYKYKKGKTEIYLKDSVALDHFLIE---HGINSVNI 563



 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
             LEE + H K    I R+KGLGEM  + L ET M    R+L++++I      L+ T   
Sbjct: 690 AFLEEVENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIED----LEKTDAV 745

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            +  MG + + R  FIQ  A  +  + 
Sbjct: 746 FSLCMGDEVEPRRAFIQAHAKDVKQLD 772


>gi|307637178|gb|ADN79628.1| DNA gyrase subunit B [Helicobacter pylori 908]
 gi|325995767|gb|ADZ51172.1| DNA gyrase subunit B [Helicobacter pylori 2018]
 gi|325997363|gb|ADZ49571.1| DNA gyrase subunit B [Helicobacter pylori 2017]
          Length = 773

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 229/576 (39%), Positives = 337/576 (58%), Gaps = 17/576 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY + SI++L+GLE VR RPGMYIG T+   LHH+  EV+DNA+DE +AG+ + I ++L
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNIGGLHHMVYEVVDNAVDESMAGFCDTINITL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV+ HP         ++LT LHAGGKFDN TY++SGGLHGVG+SV
Sbjct: 62  TDEGSCIVEDNGRGIPVDIHP-TEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDK 219
           VNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +   + GT I F PD  +    
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F A  L K  +  AYL+  +K  +  +K          +E +++  GLK +++   + 
Sbjct: 181 -EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLQETYFYKDGLKQFVKDSTK- 231

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
           + L++  I     +++      V  A A  + N    S+ N I T EGGTHE+G ++ L+
Sbjct: 232 KELLTPIIAFKSMDEETRTSIEVALAYAD-DYNENTLSFVNNIKTSEGGTHEAGFKMGLS 290

Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + I +Y +     +    IS+D+    + ++S+ + EP F GQTK+KL S  A+  V   
Sbjct: 291 KAILQYIDNNIKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKL 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + D    +L +NP EA  +    +  ++ R   +K RE   +K  +    LPGKLADC  
Sbjct: 351 VYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  +   KI  +++I +++ 
Sbjct: 411 KDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMIT 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A GC  +  +  E LRY K+IIMTDADVDG+HI +LL+TFFY+ +  LIEQ H+++   P
Sbjct: 471 AFGCGIQEGFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           L++  +G   +Y  D       L E   HG   ++I
Sbjct: 531 LYKYKKGKTEIYLKDSVALDHFLIE---HGINSVDI 563



 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
             LEE + H K    I R+KGLGEM  + L ET M    R+L++++I      L+ T   
Sbjct: 690 AFLEEVENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIED----LEKTDAI 745

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            +  MG + + R  FIQ  A  +  + 
Sbjct: 746 FSLCMGDEVEPRRAFIQAHAKDVKQLD 772


>gi|317009520|gb|ADU80100.1| DNA gyrase subunit B [Helicobacter pylori India7]
          Length = 773

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 230/576 (39%), Positives = 338/576 (58%), Gaps = 17/576 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY + SI++L+GLE VR RPGMYIG T+   LHH+  EV+DNA+DE +AG+ + I ++L
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVGGLHHMVYEVVDNAVDESMAGFCDTINITL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
            G G   V DNGRGIPV+ HP         ++LT LHAGGKFDN TY++SGGLHGVG+SV
Sbjct: 62  TGEGSCIVEDNGRGIPVDIHP-TEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDK 219
           VNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +   + GT I F PD  +    
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F A  L K  +  AYL+  +K  +  +K          +E +++  GLK +++   + 
Sbjct: 181 -EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLQETYFYKDGLKQFVKDSAK- 231

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
           + L++  I     +++      V  A A  + N    S+ N I T EGGTHE+G ++ L+
Sbjct: 232 KELLTPIISFKSMDEETRTSIEVALAYAD-DYNENTLSFVNNIKTSEGGTHEAGFKMGLS 290

Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + I +Y +     +    IS+D+    + ++S+ + EP F GQTK+KL S  A+  V   
Sbjct: 291 KAILQYIDNNIKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKL 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + D    +L +NP EA  +    +  ++ R   +K RE   +K  +    LPGKLADC  
Sbjct: 351 VYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  +   KI  +++I +++ 
Sbjct: 411 KDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMIT 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A GC  +  +  E LRY K+IIMTDADVDG+HI +LL+TFFY+ +  LIEQ H+++   P
Sbjct: 471 AFGCGIQESFEIEKLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHIYIAQAP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           L++  +G   +Y  D       L E   HG   ++I
Sbjct: 531 LYKYKKGKTEIYLKDSVALDHFLIE---HGINSVDI 563



 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
             LEE + H K    I R+KGLGEM  + L ET M    R+L++++I      L+ T   
Sbjct: 690 AFLEEVENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIED----LEKTDAV 745

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            +  MG + + R  FIQ  A  +  + 
Sbjct: 746 FSLCMGDEVEPRRAFIQAHAKDVKQLD 772


>gi|308184282|ref|YP_003928415.1| DNA gyrase subunit B [Helicobacter pylori SJM180]
 gi|308060202|gb|ADO02098.1| DNA gyrase subunit B [Helicobacter pylori SJM180]
          Length = 773

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 228/576 (39%), Positives = 337/576 (58%), Gaps = 17/576 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY + SI++L+GLE VR RPGMYIG T+   LHH+  EV+DNA+DE +AG+ + I ++L
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNIGGLHHMVYEVVDNAVDESMAGFCDTINITL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV+ HP         ++LT LHAGGKFDN TY++SGGLHGVG+SV
Sbjct: 62  TDEGSCIVEDNGRGIPVDIHP-TEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDK 219
           VNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +   + GT I F PD  +    
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F A  L K  +  AYL+  +K  +  +K          +E +++  GLK +++   + 
Sbjct: 181 -EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLQETYFYEDGLKQFVKDSAK- 231

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
           + L++  +     +++      V  A A  + N    S+ N I T EGGTHE+G ++ L+
Sbjct: 232 KELLTPIVAFKSMDEETRTSIEVALAYAD-DYNENTLSFVNNIKTSEGGTHEAGFKMGLS 290

Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + I +Y +     +    IS+D+    + ++S+ + EP F GQTK+KL S  A+  V   
Sbjct: 291 KAILQYIDNNIKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKL 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + D    +L +NP EA  +    +  ++ R   +K RE   +K  +    LPGKLADC  
Sbjct: 351 VYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  +   KI  +++I +++ 
Sbjct: 411 KDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMIT 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A GC  +  +  E LRY K+IIMTDADVDG+HI +LL+TFFY+ +  LIEQ H+++   P
Sbjct: 471 AFGCGIQESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           L++  +G   +Y  D       L E   HG   ++I
Sbjct: 531 LYKYKKGKTEIYLKDSVALDHFLIE---HGINSVDI 563



 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
             LEE + H K    I R+KGLGEM  + L ET M    R+L++++I      L+ T   
Sbjct: 690 AFLEEVENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIED----LEKTDAV 745

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            +  MG + + R  FIQ  A  +  + 
Sbjct: 746 FSLCMGDEVEPRRAFIQAHAKDVKQLD 772


>gi|296120721|ref|YP_003628499.1| DNA topoisomerase type IIsubunit alpha B region 2 domain protein
           [Planctomyces limnophilus DSM 3776]
 gi|296013061|gb|ADG66300.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Planctomyces limnophilus DSM 3776]
          Length = 824

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 214/588 (36%), Positives = 327/588 (55%), Gaps = 17/588 (2%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90
              A     ++  Y   +IR LEG+E +R+RP MYIG    + LHHL  EV+DN++DE +
Sbjct: 2   SDAAATPAPSTSEYSEKNIRALEGIEGIRLRPDMYIGDRGSRGLHHLVFEVVDNSIDEAV 61

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD-NSTYE 149
           AGYA  + V ++ +G ++++D+GRGIPV        KS LEI+LT +HAGGKFD    Y+
Sbjct: 62  AGYATWVSVKINVDGSVSIIDDGRGIPVGAMADQGGKSALEIVLTKIHAGGKFDRQGGYK 121

Query: 150 I-SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
             +GGLHGVGI+ VNALS+ L   + R+  +++  F+RG   + L K   + +  GT+IT
Sbjct: 122 TGTGGLHGVGITAVNALSEWLSAEIRREGHVWTMDFARGTRTTELTKLG-LADVTGTKIT 180

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F+PD  IF + + F    L K  Q  A+L+  +    + ++         + EEF++P G
Sbjct: 181 FKPDSTIFTE-SKFVFDVLAKRLQELAFLNAGIHIRLADER-------TEQSEEFHYPDG 232

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           L+ +++      + + ++I + + E +G     V   +   +     + ++ N I   EG
Sbjct: 233 LREFVKHLNRTETTLYADILSIEGEIEGV---KVMVCLQHNDGFSETVRAFANNIYNMEG 289

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           GTH SG R ALTR I  Y +     + I    DD     V +++V +  P+F GQTKTKL
Sbjct: 290 GTHLSGFRSALTRAINNYGKRENLFKDIDTTGDDFREGLVCVIAVRVPHPQFEGQTKTKL 349

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRK 446
            + + +  V + + +    +  +NP  A K+ +     +E R   RK RE+  RK A+  
Sbjct: 350 SNGEVEGIVNSIVFEGLTKFFEENPGIAKKICQKGAMAAEAREAARKSREMVRRKGALTS 409

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LP KL DC       TEL++VEGDSAGGSA   R+ + QA+LPLRGKILNV  A   K
Sbjct: 410 GGLPEKLRDCRSRELDITELYLVEGDSAGGSADTGRDSNTQAILPLRGKILNVEKAQLVK 469

Query: 507 IRNNQQIMDLVQALGCRTRSQ-YREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           I +N +I +L +A+G    ++       RY K+I+MTDADVDG+HI +LLLTF ++ M  
Sbjct: 470 ILDNAEIANLFKAVGIPPMAELEDVTKRRYGKIILMTDADVDGSHIRTLLLTFLFRHMRA 529

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613
           L+E   +++  PPL+R+ Q  K+ Y    +     L E   +G   ++
Sbjct: 530 LVEHGCIYIAQPPLYRVIQKNKTRYVQTHDMMMTELIELGMNGTRLVD 577



 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 19/152 (12%)

Query: 536 EKVIIMTD--ADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHD 593
            ++  + D  +D+ G  I       F   +   +    L     P FRI Q    +    
Sbjct: 689 HEIRTLNDVLSDLRGIGIQ------FRHLIPAGMRDGELVF---P-FRIEQEKSVLKLQS 738

Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
                  LE+ +  G+  + ++RFKGLGEM   +L ET+M    RTLL+V ++       
Sbjct: 739 LREL---LEKLRALGEDGLTVTRFKGLGEMDPEELWETSMQPTARTLLQVRMDD----AA 791

Query: 654 DTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              +    LMG + + R +FI++ A  + D+ 
Sbjct: 792 AADEMFRVLMGDQVEPRREFIEKHALDVKDLD 823


>gi|98990336|gb|ABF60236.1| DNA gyrase subunit B [Mesoplasma photuris]
          Length = 557

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 221/567 (38%), Positives = 327/567 (57%), Gaps = 16/567 (2%)

Query: 67  GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           G T ++ LHHL  E++DN++DE +AG ANLI++++   G + V DNGRGIPV    +   
Sbjct: 1   GSTSKEGLHHLVWEIVDNSIDEAMAGMANLIKITITNEGEVIVEDNGRGIPVGIQ-EDSG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           K  +E++ T LHAGGKFD+S+Y+ISGGLHGVG SVVNALS  + V   R+  I    FS 
Sbjct: 60  KRAIELVFTQLHAGGKFDSSSYKISGGLHGVGASVVNALSLYVDVQSMREGKIHHMLFSN 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G       K     +K GT + F+PDP+IF +   FD  ++    +  +YL+  ++    
Sbjct: 120 GGTEQTELKIMGDTDKTGTIVRFKPDPEIFKETITFDWEKIRNKAKQLSYLNKGIQIHLR 179

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK--KGTHRGTVEW 304
            ++   E        E++FP G+  Y++ K E ++ I+  +F           +   VE 
Sbjct: 180 DERIDRE-------VEYHFPNGILDYVKEKNETKTKINPNVFYVDGAHAGDDGNEIEVEV 232

Query: 305 AIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDD 361
           A+ +  E  E   ++ N I T EGG HE GLR +LTR I +YAE     NK       DD
Sbjct: 233 ALQYNSEYQENLVTFANNINTHEGGAHEDGLRQSLTRVINRYAEKVAKANKAPSKYSWDD 292

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
           +    V I+S+   +P++ GQTKTKL + DA++ V+  +   F+ +L+++P +A  +L+ 
Sbjct: 293 IKEGMVCIVSIRHTDPQYEGQTKTKLANPDAKKAVDAIVGAAFEEFLLKSPDDAKAILDK 352

Query: 422 VIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
                + R+  ++ RE   RK+A+    LPGKLADC    +   EL++VEGDSAGGSAK 
Sbjct: 353 NANAQKARIAAQRAREDTRRKSALDTFSLPGKLADCESKDSQIAELYLVEGDSAGGSAKT 412

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            RNR  QA+LPLRGK+LNV      +   N +I  +V A+G   +        RY K++I
Sbjct: 413 GRNRKFQAILPLRGKVLNVERVTEARAFTNNEIKSIVTAIGTGIKEDLDLTKTRYGKIVI 472

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKI 600
           MTDADVDGAHI +LLLTFFY+ M +LI+  ++++  PPLF+I  G K  YA+ ++  +++
Sbjct: 473 MTDADVDGAHIRTLLLTFFYRYMKELIKNGNIYIAQPPLFKIEAGKKIAYAYSDQELEEL 532

Query: 601 LEEFKKHGKGKIEISRFKGLGEMLASQ 627
             +       +  I R+KGLGEM   Q
Sbjct: 533 --KAGDFANSRYTIQRYKGLGEMDPMQ 557


>gi|208434424|ref|YP_002266090.1| DNA gyrase subunit B [Helicobacter pylori G27]
 gi|208432353|gb|ACI27224.1| DNA gyrase subunit B [Helicobacter pylori G27]
          Length = 773

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 230/576 (39%), Positives = 335/576 (58%), Gaps = 17/576 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY + SI++L+GLE VR RPGMYIG T+   LHH+  EV+DNA+DE +AG+ + I ++L
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVGGLHHMVYEVVDNAVDESMAGFCDTINITL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV+ HP         ++LT LHAGGKFDN TY++SGGLHGVG+SV
Sbjct: 62  TDEGSCIVEDNGRGIPVDIHP-TEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDK 219
           VNALS  L +T+ ++  I+ Q+F +GIP S LE   K +   + GT I F PD  +    
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPTSELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F A  L K  +  AYL+  +K  +  +K          +E +++  GLK +++     
Sbjct: 181 -EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLQETYFYKDGLKQFVKD-SAE 231

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
           + L++  I     +++      V  A A  + N    S+ N I T EGGTHE+G ++ L+
Sbjct: 232 KELLTPIIAFKSMDEETRTSIEVALAYAD-DYNENTLSFVNNIKTSEGGTHEAGFKMGLS 290

Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + I +Y +     +    IS+D+    + ++S+ + EP F GQTK+KL S  A+  V   
Sbjct: 291 KAILQYIDNNIKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKL 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + D    +L +NP EA  +    +  ++ R   +K RE   +K  +    LPGKLADC  
Sbjct: 351 VYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  +   KI  +++I +++ 
Sbjct: 411 KDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMIT 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A GC  +  +  E LRY K+IIMTDADVDG+HI +LL+TFFY+ +  LIEQ H+F+   P
Sbjct: 471 AFGCGIQESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVFIAQAP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           L++  +G   +Y  D       L E   HG   ++I
Sbjct: 531 LYKYKKGKTEIYLKDSVALDHFLIE---HGINSVDI 563



 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
             LEE + H K    I R+KGLGEM  + L ET M    R+L++++I      L+ T   
Sbjct: 690 AFLEEVENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIED----LEKTDAV 745

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            +  MG + + R  FIQ  A  +  + 
Sbjct: 746 FSLCMGDEVEPRRAFIQAHAKDVKQLD 772


>gi|149174461|ref|ZP_01853087.1| DNA gyrase subunit B [Planctomyces maris DSM 8797]
 gi|148846571|gb|EDL60908.1| DNA gyrase subunit B [Planctomyces maris DSM 8797]
          Length = 831

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 212/580 (36%), Positives = 327/580 (56%), Gaps = 17/580 (2%)

Query: 30  PDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEV 89
            D      +     YD S+IR LEG+E +R RP MYIG T  + LHHL  EV+DN++DE 
Sbjct: 2   SDQEESQTELKKTGYDESNIRALEGVEGIRTRPAMYIGDTTLRGLHHLVYEVVDNSIDEC 61

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD-NSTY 148
           +  YA++I V ++ +G +T  D+GRGIP+   P   N+  LE++LT +HAGGKFD    Y
Sbjct: 62  VNNYASIINVKINADGSVTCSDDGRGIPIGIMPDMNNRPALEVVLTEIHAGGKFDREGGY 121

Query: 149 EI-SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           +  +GGLHGVGI+ VNALS+ L   V R+  +++  F +G+  +PL+K  K  +K GT+I
Sbjct: 122 KTGTGGLHGVGITAVNALSEWLEAEVRREGHVWTMDFHQGLLKTPLKKLGKT-DKSGTKI 180

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
           TF+PD  IF D   F    L K  Q  A+L+  V+   + ++         + +EF++  
Sbjct: 181 TFKPDGTIFPD-TKFVYDTLTKRLQELAFLNAGVRIRINDER-------TGQSDEFHYEE 232

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDE 326
           GL  +++      +++  EI   + E +G     V+ ++   +     +  + N I   E
Sbjct: 233 GLVEFVRHLNRTETVLYEEIIHIQGELEGVQ---VDISVQHNDGSTENVRCFANNIFNIE 289

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           GGTH SG R ALTR I  Y +     +  +   DD       +++V + +P+F GQTKTK
Sbjct: 290 GGTHFSGFRGALTRSINAYGKKANLFKDFTPSGDDFREGLTAVITVRVPDPQFEGQTKTK 349

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKL-LEWVIERSEERLRRRKQREVNRKTAIR 445
           L + + +  V+  + +    +  +NP  A K+ L+ ++        ++ +  V RK A+ 
Sbjct: 350 LGNSEVEGIVQTVVNEKLTKFFEENPGVAKKISLKGLLAAEAREAAKKAREMVRRKGALT 409

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LP KL DC       TEL++VEGDSAGGSA   R+ + QA+LPLRGKILNV  A   
Sbjct: 410 TGGLPEKLRDCRSRELDITELYLVEGDSAGGSADTGRDSNIQAILPLRGKILNVEKAQLV 469

Query: 506 KIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           K+ +N +I ++ +A+G    + + +    RY K+I+MTDADVDG+HI +LLLTFF++ M 
Sbjct: 470 KVLDNAEIANIFKAVGVPPGAAFDDVTKRRYGKIILMTDADVDGSHIRTLLLTFFFRHMR 529

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           +L+    +++  PPL+R+TQG K  Y   ++     L E 
Sbjct: 530 ELVNNGCVYVAQPPLYRVTQGKKIRYVQTQDEMMNELVEL 569



 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            +++L   +  G+  ++++RFKGLGEM + +L +T+MD  KR LL+V     +       
Sbjct: 746 LRQLLPSLRDIGEKGLKLTRFKGLGEMNSEELWDTSMDPEKRVLLQV----GMQDAAAAD 801

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           +    LMG   + R +FI++ A  + ++ 
Sbjct: 802 EIFRVLMGDVVEPRREFIEKHALDVKNLD 830


>gi|254779478|ref|YP_003057583.1| DNA gyrase subunit B [Helicobacter pylori B38]
 gi|254001389|emb|CAX29378.1| DNA gyrase subunit B (type II topoisomerase) [Helicobacter pylori
           B38]
          Length = 773

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 229/576 (39%), Positives = 336/576 (58%), Gaps = 17/576 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY + SI++L+GLE VR RPGMYIG T+   LHH+  EV+DNA+DE +AG+ + I ++L
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVGGLHHMVYEVVDNAVDESMAGFCDAINITL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV+ HP         ++LT LHAGGKFDN TY++SGGLHGVG+SV
Sbjct: 62  TDEGSCIVEDNGRGIPVDIHP-TEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDK 219
           VNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +   + GT I F PD  +    
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F A  L K  +  AYL+  +K  +  +K           E +++  GLK +++   + 
Sbjct: 181 -EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLHETYFYEDGLKQFVKDSAK- 231

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
           + L++  I     +++      V  A A  + N    S+ N I T EGGTHE+G ++ L+
Sbjct: 232 KELLTPIISFKSMDEETRTSIEVALAYAD-DYNENTLSFVNNIKTSEGGTHEAGFKMGLS 290

Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + I +Y +     +    IS+D+    + ++S+ + EP F GQTK+KL S  A+  V   
Sbjct: 291 KAILQYIDNNIKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKL 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + D    +L +NP EA  +    +  ++ R   +K RE   +K  +    LPGKLADC  
Sbjct: 351 VYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  +   KI  +++I +++ 
Sbjct: 411 KDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMIT 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A GC  +  +  E LRY K+IIMTDADVDG+HI +LL+TFFY+ +  LIEQ H+++   P
Sbjct: 471 AFGCGIQESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           L++  +G   +Y  D       L E   HG   ++I
Sbjct: 531 LYKYKKGKTEIYLKDSVALDHFLIE---HGINSVDI 563



 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
             LEE + H K    I R+KGLGEM  + L ET M    R+L++++I      L+ T   
Sbjct: 690 AFLEEVENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIED----LEKTDAV 745

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            +  MG + + R  FIQ  A  +  + 
Sbjct: 746 FSLCMGDEVEPRRAFIQAHAKDVKQLD 772


>gi|94957782|gb|ABF47141.1| DNA gyrase subunit B [Mesoplasma tabanidae]
          Length = 552

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 223/564 (39%), Positives = 321/564 (56%), Gaps = 17/564 (3%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T +  LHHL  E++DN++DE +AG+AN I +++   G + V DNGRGIPV        KS
Sbjct: 2   TSKAGLHHLVWEIMDNSVDEAMAGFANKIILTITKEGEIIVQDNGRGIPVGIQA-DSGKS 60

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
            LE++ T LHAGGKFD+ +Y+ISGGLHGVG SVVNALS  + V V R+  I  Q FS G 
Sbjct: 61  ALELVFTQLHAGGKFDSDSYKISGGLHGVGASVVNALSLYVDVQVKREGKIHHQVFSGGG 120

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
                 +     ++ GT + F+PDP+IF +   FD   +    +  +YL+  +    +  
Sbjct: 121 TQQTEIEIIGETSETGTIVRFKPDPEIFLEGTEFDYETIRNKVKQLSYLNKGLVIELNDL 180

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +       I +  E++FP G+  Y++ K E +  I+  IF             VE A+ +
Sbjct: 181 R-------IDKHVEYHFPNGILDYVKEKNETKVKINPSIFYV---DDKHEDIEVEVALQY 230

Query: 309 CEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMIS 365
             E  E   ++ N I T EGGTHE GLR +L R I +YAE   T NK A     DD+   
Sbjct: 231 NAEYQENLITFVNNINTHEGGTHEDGLRQSLVRVINRYAEKVATGNKPAAKYSWDDIKEG 290

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
            V I+S+   +P++ GQTKTKL + DA++ V+  + + F+ +L+++P +A  +++     
Sbjct: 291 MVCIVSIRHTDPQYEGQTKTKLANPDAKKAVDAVVGEAFEEFLLKSPEDAKAIIDKNANA 350

Query: 426 SEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
            + R+  ++ RE   RK+A+    LPGKLADC        EL++VEGDSAGGSAK  RNR
Sbjct: 351 QKARIAAQRAREETRRKSALDTFSLPGKLADCESKDPEIAELYLVEGDSAGGSAKTGRNR 410

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA+LPLRGK+LNV      +   N +I  +V A+G   +       LRY K++IMTDA
Sbjct: 411 RFQAILPLRGKVLNVERVAEVRAFANNEIKSIVTAIGTGIKEDIDLTKLRYGKIVIMTDA 470

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           DVDGAHI +LLLTFFY+ M  L+   H+++  PPL++I  G K  YA+ +    ++    
Sbjct: 471 DVDGAHIRTLLLTFFYRYMKQLVVDGHVYIAQPPLYKIEAGKKVAYAYSDAELDELKA-- 528

Query: 605 KKHGKGKIEISRFKGLGEMLASQL 628
                 +  I R+KGLGEM   QL
Sbjct: 529 GDFKDSRFTIQRYKGLGEMDPIQL 552


>gi|315586815|gb|ADU41196.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Helicobacter pylori
           35A]
          Length = 773

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 230/576 (39%), Positives = 338/576 (58%), Gaps = 17/576 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY + SI++L+GLE VR RPGMYIG T+   LHH+  EV+DNA+DE +AG+ + I ++L
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVGGLHHMVYEVVDNAVDESMAGFCDTINITL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV+ HP         ++LT LHAGGKFDN TY++SGGLHGVG+SV
Sbjct: 62  TDEGSCIVEDNGRGIPVDIHP-TEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDK 219
           VNALS  L +T+ +++ I+ Q+F +GIP+S LE   K +   + GT I F PD  +    
Sbjct: 121 VNALSKRLIMTIKKESQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F A  L K  +  AYL+  +K  +  +K          +E +++  GLK +++   + 
Sbjct: 181 -EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLQETYFYEDGLKQFVKDSAK- 231

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
           + L++  I     +++      V  A A  + N    S+ N I T EGGTHE+G ++ L+
Sbjct: 232 KELLTPVISFKSMDEETHTSIEVALAYAD-DYNENTLSFVNNIKTSEGGTHEAGFKMGLS 290

Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + I +Y +     R    IS+D+    + ++S+ + EP F GQTK+KL S  A+  V   
Sbjct: 291 KAILQYIDENIKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKL 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + D    +L +NP EA  +    +  ++ R   +K RE   +K  +    LPGKLADC  
Sbjct: 351 VYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  +   KI  +++I +++ 
Sbjct: 411 KDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMIT 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A GC  +  +  E LRY K+IIMTDADVDG+HI +LL+TFFY+ +  LIEQ H+++   P
Sbjct: 471 AFGCGIQESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           L++  +G   +Y  D       L E   HG   ++I
Sbjct: 531 LYKYKKGKTEIYLKDSVALDHFLIE---HGINSVDI 563



 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
             LEE + H K    I R+KGLGEM  + L ET M    R+L++++I      L+ T   
Sbjct: 690 AFLEEVENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIED----LEKTDAV 745

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            +  MG + + R  FIQ  A  +  + 
Sbjct: 746 FSLCMGDEVEPRRAFIQAHAKDVKQLD 772


>gi|317177660|dbj|BAJ55449.1| DNA gyrase subunit B [Helicobacter pylori F16]
          Length = 773

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 230/576 (39%), Positives = 337/576 (58%), Gaps = 17/576 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY + SI++L+GLE VR RPGMYIG T+   LHH+  EV+DNA+DE +AG+ + I ++L
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVGGLHHMVYEVVDNAVDESMAGFCDTINITL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV+ HP         ++LT LHAGGKFDN TY++SGGLHGVG+SV
Sbjct: 62  TDEGSCIVEDNGRGIPVDIHP-TEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDK 219
           VNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +   + GT I F PD  +    
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F A  L K  +  AYL+  +K  +  +K          +E +++  GLK +++   + 
Sbjct: 181 -EFQAGILQKRFKEMAYLNNGLKISFKEEK-------TQLQETYFYEDGLKQFVKDSAK- 231

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
           + L++  I     +++      V  A A  + N    S+ N I T EGGTHE+G ++ L+
Sbjct: 232 KELLTPVISFKSMDEETRTSIEVSLAYAD-DYNENTLSFVNNIKTSEGGTHEAGFKMGLS 290

Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + I +Y +     R    IS+D+    + ++S+ + EP F GQTK+KL S  A+  V   
Sbjct: 291 KAILQYIDENIKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKL 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + D    +L +NP EA  +    +  ++ R   +K RE   +K  +    LPGKLADC  
Sbjct: 351 VYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  +   KI  +++I +++ 
Sbjct: 411 KDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMIT 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A GC  +  +  E LRY K+IIMTDADVDG+HI +LL+TFFY+ +  LIEQ H+++   P
Sbjct: 471 AFGCGIQESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           L++  +G   +Y  D       L E   HG   ++I
Sbjct: 531 LYKYKKGKTEIYLKDSVALDHFLIE---HGINSVDI 563



 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
             LEE + H K    I R+KGLGEM  + L ET M    R+L++++I      L+ T   
Sbjct: 690 AFLEEVENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIED----LEKTDAV 745

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            +  MG + + R  FIQ  A  +  + 
Sbjct: 746 FSLCMGDEVEPRRAFIQAHAKDVKQLD 772


>gi|308063700|gb|ADO05587.1| DNA gyrase subunit B [Helicobacter pylori Sat464]
          Length = 773

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 230/576 (39%), Positives = 337/576 (58%), Gaps = 17/576 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY + SI++L+GLE VR RPGMYIG T+   LHH+  EV+DNA+DE +AG+ + I ++L
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVGGLHHMVYEVVDNAVDESMAGFCDTINITL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV+ HP         ++LT LHAGGKFDN TY++SGGLHGVG+SV
Sbjct: 62  TDEGSCIVEDNGRGIPVDIHP-TEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDK 219
           VNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +   + GT I F PD  +    
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F A  L K  +  AYL+  +K  +  +K          +E +++  GLK +++   + 
Sbjct: 181 -EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLQETYFYEDGLKQFVKDSAK- 231

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
           + L++  I     +++      V  A A  + N    S+ N I T EGGTHE+G ++ L+
Sbjct: 232 KELLTPVISFKSMDEETRTSIEVALAYAD-DYNENTLSFVNNIKTSEGGTHEAGFKMGLS 290

Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + I +Y +     R    IS+D+    + ++S+ + EP F GQTK+KL S  A+  V   
Sbjct: 291 KAILQYIDENIKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKL 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + D    +L +NP EA  +    +  ++ R   +K RE   +K  +    LPGKLADC  
Sbjct: 351 VYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  +   KI  +++I +++ 
Sbjct: 411 KDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMIT 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A GC  +  +  E LRY K+IIMTDADVDG+HI +LL+TFFY+ +  LIEQ H+++   P
Sbjct: 471 AFGCGIQESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           L++  +G   +Y  D       L E   HG   ++I
Sbjct: 531 LYKYKKGKTEIYLKDSVALDHFLIE---HGINSVDI 563



 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
             LEE + H K    I R+KGLGEM  + L ET M    R+L++++I      L+ T   
Sbjct: 690 AFLEEVENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIED----LEKTDAV 745

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            +  MG + + R  FIQ  A  +  + 
Sbjct: 746 FSLCMGDEVEPRRAFIQAHAKDVKQLD 772


>gi|217034369|ref|ZP_03439784.1| hypothetical protein HP9810_889g14 [Helicobacter pylori 98-10]
 gi|216943164|gb|EEC22634.1| hypothetical protein HP9810_889g14 [Helicobacter pylori 98-10]
          Length = 773

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 230/576 (39%), Positives = 338/576 (58%), Gaps = 17/576 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY + SI++L+GLE VR RPGMYIG T+   LHH+  EV+DNA+DE +AG+ + I ++L
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVGGLHHMVYEVVDNAVDESMAGFCDTINITL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV+ HP         ++LT LHAGGKFDN TY++SGGLHGVG+SV
Sbjct: 62  TDEGSCIVEDNGRGIPVDIHP-TEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDK 219
           VNALS  L +T+ +++ I+ Q+F +GIP+S LE   K +   + GT I F PD  +    
Sbjct: 121 VNALSKRLIMTIKKESQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F A  L K  +  AYL+  +K  +  +K          +E +++  GLK +++   + 
Sbjct: 181 -EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLQETYFYEDGLKQFVKDSAK- 231

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
           + L++  I     +++      V  A A  + N    S+ N I T EGGTHE+G ++ L+
Sbjct: 232 KELLTPVISFKSMDEETHTSIEVALAYAD-DYNENTLSFVNNIKTSEGGTHETGFKMGLS 290

Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + I +Y +     R    IS+D+    + ++S+ + EP F GQTK+KL S  A+  V   
Sbjct: 291 KAILQYIDENIKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKL 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + D    +L +NP EA  +    +  ++ R   +K RE   +K  +    LPGKLADC  
Sbjct: 351 VYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  +   KI  +++I +++ 
Sbjct: 411 KDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMIT 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A GC  +  +  E LRY K+IIMTDADVDG+HI +LL+TFFY+ +  LIEQ H+++   P
Sbjct: 471 AFGCGIQESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           L++  +G   +Y  D       L E   HG   ++I
Sbjct: 531 LYKYKKGKTEIYLKDSIALDHFLIE---HGINSVDI 563



 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
             LEE + H K    I R+KGLGEM  + L ET M    R+L++++I      L+ T   
Sbjct: 690 AFLEEVENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIED----LEKTDAV 745

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            +  MG + + R  FIQ  A  +  + 
Sbjct: 746 FSLCMGDEVEPRRAFIQAHAKDVKQLD 772


>gi|308061830|gb|ADO03718.1| DNA gyrase subunit B [Helicobacter pylori Cuz20]
          Length = 773

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 230/576 (39%), Positives = 337/576 (58%), Gaps = 17/576 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY + SI++L+GLE VR RPGMYIG T+   LHH+  EV+DNA+DE +AG+ + I ++L
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVGGLHHMVYEVVDNAVDESMAGFCDTINITL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV+ HP         ++LT LHAGGKFDN TY++SGGLHGVG+SV
Sbjct: 62  TDEGSCIVEDNGRGIPVDIHP-TEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDK 219
           VNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +   + GT I F PD  +    
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F A  L K  +  AYL+  +K  +  +K          +E +++  GLK +++   + 
Sbjct: 181 -EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLQETYFYEDGLKQFVKDSAK- 231

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
           + L++  I     +++      V  A A  + N    S+ N I T EGGTHE+G ++ L+
Sbjct: 232 KELLTPVISFKSMDEETRTSIEVALAYAD-DYNENTLSFVNNIKTSEGGTHEAGFKMGLS 290

Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + I +Y +     R    IS+D+    + ++S+ + EP F GQTK+KL S  A+  V   
Sbjct: 291 KAILQYIDGNIKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKL 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + D    +L +NP EA  +    +  ++ R   +K RE   +K  +    LPGKLADC  
Sbjct: 351 VYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  +   KI  +++I +++ 
Sbjct: 411 KDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMIT 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A GC  +  +  E LRY K+IIMTDADVDG+HI +LL+TFFY+ +  LIEQ H+++   P
Sbjct: 471 AFGCGIQESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           L++  +G   +Y  D       L E   HG   ++I
Sbjct: 531 LYKYKKGKTEIYLKDSVALDHFLIE---HGINSVDI 563



 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
             LEE + H K    I R+KGLGEM  + L ET M    R+L++++I      L+ T   
Sbjct: 690 AFLEEVENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIED----LEKTDAV 745

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            +  MG + + R  FIQ  A  +  + 
Sbjct: 746 FSLCMGDEVEPRRAFIQAHAKDVKQLD 772


>gi|262274994|ref|ZP_06052805.1| topoisomerase IV subunit B [Grimontia hollisae CIP 101886]
 gi|262221557|gb|EEY72871.1| topoisomerase IV subunit B [Grimontia hollisae CIP 101886]
          Length = 576

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 221/590 (37%), Positives = 323/590 (54%), Gaps = 25/590 (4%)

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           EV L  +  L V+D+GRG+PV+ HP+    S +E+IL  LHAGGKF N  Y+ SGGLHGV
Sbjct: 2   EVILHADQSLEVIDDGRGMPVDIHPE-EGVSGVELILCKLHAGGKFSNKNYQFSGGLHGV 60

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIF 216
           GISVVNALS  + V+V R   ++   F  G  +  L       R  +GTR+ F PD   F
Sbjct: 61  GISVVNALSKRVEVSVKRDGQVYDIAFEHGEKVQELTVTGTCGRRAKGTRVHFWPDSSYF 120

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                F  +RL  + ++KA L   ++  ++            E   + +  GLK YL   
Sbjct: 121 DSP-KFSVSRLKNILKAKAVLCPGLEIVFTDK-------NTDETITWCYESGLKEYLAEG 172

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGL 334
           +    L+  E F G+           +WA+ W  E  E    SY N I T +GGTH +GL
Sbjct: 173 VRGYELLPEEPFVGEFSASNE---AADWAVIWLPEGGELITESYVNLIPTAQGGTHVNGL 229

Query: 335 RVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
           R  L   ++++ E      R + + +DD+      +LSV +++P+FAGQTK +L S    
Sbjct: 230 RQGLLDAMREFCEFRNLLPRGVKLTADDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCA 289

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
             V   ++D F  +L + P  A +L E  I  +  R+R    ++V RK       LPGKL
Sbjct: 290 AFVSGVVKDSFSLWLNERPQLAEQLAEVCIANAHRRMR--AAKKVVRKKVASGPALPGKL 347

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
            DC+      TELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     ++++  +Q++
Sbjct: 348 TDCAMQDLSRTELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVSADQVLASQEV 407

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            D+  ALG    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H++
Sbjct: 408 HDISVALGIDPDSDDL-SGLRYGKICILADADSDGLHIATLLCALFVKHFRALVKAGHVY 466

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           +  PPL+RI  G +  YA D+E K  ILE   +  + KI++ RFKGLGEM   QL+ET M
Sbjct: 467 VAMPPLYRIDCGKEVYYALDDEEKAGILERLSQK-RAKIDVQRFKGLGEMNPLQLRETTM 525

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           D N R L+++ I+      ++T   ++ L+G K A++R  ++Q++    +
Sbjct: 526 DPNTRRLVQLTIDDQ----EETDRMMDMLLGKKRAEDRRHWLQDKGDMAE 571


>gi|317181823|dbj|BAJ59607.1| DNA gyrase subunit B [Helicobacter pylori F57]
          Length = 773

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 230/576 (39%), Positives = 337/576 (58%), Gaps = 17/576 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY + SI++L+GLE VR RPGMYIG T+   LHH+  EV+DNA+DE +AG+ + I ++L
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVGGLHHMVYEVVDNAVDESMAGFCDTINITL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV+ HP         ++LT LHAGGKFDN TY++SGGLHGVG+SV
Sbjct: 62  TDEGSCIVEDNGRGIPVDIHP-TEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDK 219
           VNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +   + GT I F PD  +    
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F A  L K  +  AYL+  +K  +  +K          +E +++  GLK +++   + 
Sbjct: 181 -EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLQETYFYEDGLKQFVKDSAK- 231

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
           + L++  I     +++      V  A A  + N    S+ N I T EGGTHE+G ++ L+
Sbjct: 232 KELLTPVISFKSMDEETRTSIEVALAYAD-DYNENTLSFVNNIKTSEGGTHEAGFKMGLS 290

Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + I +Y +     R    IS+D+    + ++S+ + EP F GQTK+KL S  A+  V   
Sbjct: 291 KAILQYIDENIKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKL 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + D    +L +NP EA  +    +  ++ R   +K RE   +K  +    LPGKLADC  
Sbjct: 351 VYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  +   KI  +++I +++ 
Sbjct: 411 KDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMIT 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A GC  +  +  E LRY K+IIMTDADVDG+HI +LL+TFFY+ +  LIEQ H+++   P
Sbjct: 471 AFGCGIQESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           L++  +G   +Y  D       L E   HG   ++I
Sbjct: 531 LYKYKKGKTEIYLKDSVALDHFLIE---HGINSVDI 563



 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
             LEE + H K    I R+KGLGEM  + L ET M    R+L++++I      L+ T   
Sbjct: 690 AFLEEVENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIED----LEKTDAV 745

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            +  MG + + R  FIQ  A  +  + 
Sbjct: 746 FSLCMGDEVEPRRAFIQAHAKDVKQLD 772


>gi|317013919|gb|ADU81355.1| DNA gyrase subunit B [Helicobacter pylori Gambia94/24]
          Length = 773

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 230/576 (39%), Positives = 337/576 (58%), Gaps = 17/576 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY + SI++L+GLE VR RPGMYIG T+   LHH+  EV+DNA+DE +AG+ + I ++L
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNIGGLHHMVYEVVDNAVDESMAGFCDTINITL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV+ HP         ++LT LHAGGKFDN TY++SGGLHGVG+SV
Sbjct: 62  TSEGSCIVEDNGRGIPVDIHP-TEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDK 219
           VNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +   + GT I F PD  +    
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F A  L K  +  AYL+  +K  +  +K          +E +++  GLK +++   + 
Sbjct: 181 -EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLQETYFYKDGLKQFVKDSAK- 231

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
           + L++  I     +++      V  A A  + N    S+ N I T EGGTHE+G ++ L+
Sbjct: 232 KELLTPIIAFKSMDEETRTSIEVALAYAD-DYNENTLSFVNNIKTSEGGTHEAGFKMGLS 290

Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + I +Y +     +    IS+D+    + ++S+ + EP F GQTK+KL S  A+  V   
Sbjct: 291 KAILQYIDNNIKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKL 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + D    +L +NP EA  +    +  ++ R   +K RE   +K  +    LPGKLADC  
Sbjct: 351 VYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  +   KI  +++I +++ 
Sbjct: 411 KDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMIT 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A GC  +  +  E LRY K+IIMTDADVDG+HI +LL+TFFY+ +  LIEQ H+F+   P
Sbjct: 471 AFGCGIQESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVFIAQAP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           L++  +G   +Y  D       L E   HG   ++I
Sbjct: 531 LYKYKKGKTEIYLKDSVALDHFLIE---HGINSVDI 563



 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
             LEE + H K    I R+KGLGEM  + L ET M    R+L++++I      L+ T   
Sbjct: 690 SFLEEVENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIED----LEKTDAI 745

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            +  MG + + R  FIQ  A  +  + 
Sbjct: 746 FSLCMGDEVEPRRAFIQAHAKDVKQLD 772


>gi|308182657|ref|YP_003926784.1| DNA gyrase subunit B [Helicobacter pylori PeCan4]
 gi|308064842|gb|ADO06734.1| DNA gyrase subunit B [Helicobacter pylori PeCan4]
          Length = 773

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 230/576 (39%), Positives = 337/576 (58%), Gaps = 17/576 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY + SI++L+GLE VR RPGMYIG T+   LHH+  EV+DNA+DE +AG+ + I ++L
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNIGGLHHMVYEVVDNAVDESMAGFCDTINITL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV+ HP         ++LT LHAGGKFDN TY++SGGLHGVG+SV
Sbjct: 62  TDEGSCIVEDNGRGIPVDIHP-TEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDK 219
           VNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +   + GT I F PD  +    
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F A  L K  +  AYL+  +K  +  +K          +E +++  GLK +++   + 
Sbjct: 181 -EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLQETYFYKDGLKQFVKDSAK- 231

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
           + L++  I     +++      V  A A  + N    S+ N I T EGGTHE+G ++ L+
Sbjct: 232 KELLTPIIAFKSMDEETRTSIEVALAYAD-DYNENTLSFVNNIKTSEGGTHEAGFKMGLS 290

Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + I +Y +     R    IS+D+    + ++S+ + EP F GQTK+KL S  A+  V   
Sbjct: 291 KAILQYIDENIKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKL 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + D    +L +NP EA  +    +  ++ R   +K RE   +K  +    LPGKLADC  
Sbjct: 351 VYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  +   KI  +++I +++ 
Sbjct: 411 KDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMIT 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A GC  +  +  E LRY K+IIMTDADVDG+HI +LL+TFFY+ +  LIEQ H+++   P
Sbjct: 471 AFGCGIQESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           L++  +G   +Y  D       L E   HG   ++I
Sbjct: 531 LYKYKKGKTEIYLKDSVALDHFLIE---HGINSVDI 563



 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
             LEE + H K    I R+KGLGEM  + L ET M    R+L++++I      L+ T   
Sbjct: 690 AFLEEVENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIED----LEKTDAV 745

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            +  MG + + R  FIQ  A  +  + 
Sbjct: 746 FSLCMGDEVEPRRAFIQAHAKDVKQLD 772


>gi|322378945|ref|ZP_08053359.1| DNA gyrase subunit B [Helicobacter suis HS1]
 gi|321148621|gb|EFX43107.1| DNA gyrase subunit B [Helicobacter suis HS1]
          Length = 767

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 229/577 (39%), Positives = 330/577 (57%), Gaps = 19/577 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y    I++L+GLE VR RPGMYIG T+   LHH+  EV+DN++DE +AG+   I+++L  
Sbjct: 4   YMGDKIKVLKGLEGVRKRPGMYIGDTNINGLHHMVYEVVDNSIDESMAGFCTDIKITLSQ 63

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
            G   V DNGRGIPV+ HP     +   ++LTTLHAGGKFD  +Y++SGGLHGVG+SVVN
Sbjct: 64  YGSCIVEDNGRGIPVDIHP-TEGIAAATVVLTTLHAGGKFDKESYKVSGGLHGVGVSVVN 122

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS  L +T+ R+  I++Q+F++GIPL  L++      +RGT I F PD  I      FD
Sbjct: 123 ALSKRLLMTIKREGKIYTQEFAKGIPLDTLKQTG-TTKQRGTCIEFFPDESIMEVVV-FD 180

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
           AA L K  +  AYL+  V   +       E       E +++  GLK ++    +   L 
Sbjct: 181 AAILKKRFKEMAYLNHNVTITFCDQPNNIE-------EVYHYEEGLKQFILDTNKAPLLS 233

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
               F G+ E        VE A+A+ E    ++ S+ N I T EGGTHE+G R+ L+R I
Sbjct: 234 DVITFNGQAED-----MEVEVALAYNEGYSEQMFSFVNNIRTPEGGTHETGFRMGLSRAI 288

Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             Y +      ++   +I +D+    V ++S  I EP+F GQTK KL S   +  V   +
Sbjct: 289 LNYIQQNASAREKEAGVIQEDIKEGLVAVVSTKILEPQFEGQTKAKLGSSFVRPIVAKLV 348

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQN 459
            +    +  +NP  A  +++  +  ++ R   +K RE   +K  +    LPGKLADC   
Sbjct: 349 YEKMAQFFEENPSVAKAIMQKALLAAKGREAAKKARELTRKKDNLSVGTLPGKLADCQSK 408

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
               +E+++VEGDSAGGSAKQ R+R+ QA+LPLRGKILNV  +   KI  +++I +++ A
Sbjct: 409 DPKESEIYLVEGDSAGGSAKQGRDRTYQAILPLRGKILNVEKSHLSKILKSEEIKNMITA 468

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
            GC    ++  E LRY K+IIMTDADVDG+HI +LL+TFFY+ +  LI   H+++  PPL
Sbjct: 469 FGCGVGEEFNLEKLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLKPLIANGHVYIAQPPL 528

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616
           +R  +     Y  DE+     L E          I R
Sbjct: 529 YRFKKKKIEKYLKDEKELNHFLIEHGIDSAQIEGIGR 565



 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 589 VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648
           +   + +     LE  ++  K    I R+KGLGEM   QL ET M A  R LLRV +  +
Sbjct: 675 LSCLNMDALD-FLESIEERAKQGAYIQRYKGLGEMNPEQLWETTMSAANRNLLRVSLEDE 733

Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
               +   ++ N LMG + + R  +IQ  A  +  + 
Sbjct: 734 ----QSAHEAFNLLMGDEVEPRRDYIQAHARDVKHLD 766


>gi|255323607|ref|ZP_05364737.1| DNA gyrase, B subunit [Campylobacter showae RM3277]
 gi|255299321|gb|EET78608.1| DNA gyrase, B subunit [Campylobacter showae RM3277]
          Length = 769

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 233/571 (40%), Positives = 338/571 (59%), Gaps = 19/571 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY A +I++L+GLE VR RPGMYIG T+   LHH+  EV+DN++DE +AGY + I++ L
Sbjct: 3   QNYGAENIKVLKGLEAVRKRPGMYIGDTNISGLHHMIYEVVDNSIDEAMAGYCDTIDIEL 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   + DNGRGIPV  HP     S   ++LT LHAGGKFD  TY++SGGLHGVG+SV
Sbjct: 63  TREGSAIISDNGRGIPVGMHP-TEKISAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS +L V + R   +  Q+FS+GIP S LE  +   N+ GT++ F PD  IF     
Sbjct: 122 VNALSKKLVVNIKRDGKLHRQEFSKGIPQSDLEVIKNT-NRTGTQVEFWPDDSIFEVT-E 179

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L K  +  AYL+ ++   +   +          KE F++ GGL++++    +N +
Sbjct: 180 FDDEILTKRFRELAYLNPKITINFKDQR-------NGRKESFHYEGGLESFVTDLNKNEA 232

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340
           +  +  F+G     G     V++A+ + +   E   S+ N I T +GGTHE+G R  LTR
Sbjct: 233 VSKAVSFSG-----GEEDVLVDFALMYNDTYSENLLSFVNNIKTPDGGTHEAGFRAGLTR 287

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  Y        ++   I  +D+    + ++SV + EP+F GQTK KL S   +  V+ 
Sbjct: 288 VITNYIAANAAAREKDTKITGEDIREGLIAVISVKVPEPQFEGQTKGKLGSSYVKPIVQK 347

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            + +    Y  +NPIEA  ++E  +  +  R   +K R+   +K  +    LPGKLADC 
Sbjct: 348 MVFEVLSKYFEENPIEARAIMEKALMAARGREAAKKARDLTRKKEGLSIGTLPGKLADCQ 407

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  +  +KI  + +I +++
Sbjct: 408 SKDPTISELYLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSRLDKILKSDEIKNMI 467

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALGC    ++  E LRY K+IIMTDADVDG+HI +LLLTFF++ ++ ++E  H++L  P
Sbjct: 468 TALGCGIGDEFDAERLRYHKIIIMTDADVDGSHIQTLLLTFFFRFLHKVVENGHIYLAQP 527

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           PL+R  +G K +Y  DE    + L E    G
Sbjct: 528 PLYRYKKGKKEIYLKDERALNEFLIETGIEG 558



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L+E +K+ K    I R+KGLGEM   QL ET M+   R LL++ IN  +       D+
Sbjct: 686 DVLDEIEKNAKKGAYIQRYKGLGEMNPEQLWETTMNPENRRLLKININDVV----SASDT 741

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            N  MG + + R  +IQE A  +  + 
Sbjct: 742 FNLFMGDEVEPRRNYIQEHAKDVKHLD 768


>gi|224994125|dbj|BAH28875.1| DNA gyrase subunit B [Psychrobacter aquimaris]
          Length = 737

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 207/544 (38%), Positives = 329/544 (60%), Gaps = 19/544 (3%)

Query: 64  MYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122
           MYIG TD+   LHH+  EV+DN++DE +AG+ + I++ +  +  ++V+DNGRG+PV+ HP
Sbjct: 1   MYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQIDIVIHEDESVSVMDNGRGVPVDIHP 60

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
           +    S  ++I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+   + Q
Sbjct: 61  E-EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYHYHQ 119

Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
            ++ G+P + +++ E   +K GT+I F P   +F     F+   L K  +  ++L+  V+
Sbjct: 120 TYTDGVPDADIQQMEPT-DKTGTQIRFYPSSDVFTGTI-FEYDILAKRLRELSFLNSGVR 177

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
              + ++       I ++ EF   GGL  ++      +  I+        +  G    +V
Sbjct: 178 IVLTDER-------IDKRHEFEHKGGLSEFVSYINAGKDGINEVFHFVSEQDDGI---SV 227

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359
           E A+ W +    ++  + N I   +GGTH SG R ALTRG+  Y +      K  +    
Sbjct: 228 EVALQWTDTYNEKVLCFTNNIPQRDGGTHLSGFRSALTRGLNSYMDRENLFKKEKVVATG 287

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD       I+SV + +P+F+ QTK KLVS + +  VE+A+ D F+ YL++NP     + 
Sbjct: 288 DDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDYLLENPSAGKAIA 347

Query: 420 EWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
             +I+ +  R   RK      RKT +    LPGKLADC +     +EL+IVEGDSAGGSA
Sbjct: 348 NKIIDAARARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSA 407

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537
           KQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ +L+ ALGC     +Y  + +RY K
Sbjct: 408 KQGRSRKTQAILPLKGKILNVERARFDKMLSSAEVGNLITALGCGIGPDEYNPDKVRYHK 467

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           +IIMTDADVDG+HI +LLLTFF+++  +LIE+ ++++  PPL+++ +G + +Y  D+E  
Sbjct: 468 IIIMTDADVDGSHIRTLLLTFFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDDEAL 527

Query: 598 QKIL 601
           +  L
Sbjct: 528 KAYL 531


>gi|118474635|ref|YP_891213.1| DNA gyrase subunit B [Campylobacter fetus subsp. fetus 82-40]
 gi|118413861|gb|ABK82281.1| DNA gyrase, B subunit [Campylobacter fetus subsp. fetus 82-40]
          Length = 773

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 242/648 (37%), Positives = 359/648 (55%), Gaps = 34/648 (5%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           ++   NY A +I++L+GLE VR RPGMYIG T+   LHH+  EV+DN++DE +AGY + I
Sbjct: 2   ENLEKNYGAGNIKVLKGLEAVRKRPGMYIGDTNISGLHHMIYEVVDNSIDESMAGYCDTI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            + L   G   V DNGRGIPV+ HP     S   ++LT LHAGGKFD  TY++SGGLHGV
Sbjct: 62  NIELTREGSCIVTDNGRGIPVDIHP-TEKISAATVVLTVLHAGGKFDKDTYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS +L + + R   ++ Q+FS+GIP + LE   K  N+ GT + F PD  IF 
Sbjct: 121 GVSVVNALSKKLILNIKRDGNLYRQEFSKGIPQNILEAV-KTTNRTGTSVEFWPDDDIFE 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               FD   L K  +  AYL+ R+   +   ++          E ++F GGL++++    
Sbjct: 180 VT-EFDKQILSKRFKELAYLNPRITINFKDQRD-------GFSETYHFEGGLESFVTDIN 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337
           ++  +  +  F+G  E+       + +   + E    + S+ N I T +GGTHE+G R  
Sbjct: 232 KSNPVSKAVSFSG-GEEDVIVDFALLYNETYTEN---LLSFVNNIKTPDGGTHEAGFRAG 287

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR I  Y        ++   I  DD+    + I+SV + EP+F GQTK KL S   +  
Sbjct: 288 LTRAITNYIAANAAAREKDTKITGDDIREGLIAIVSVKVPEPQFEGQTKGKLGSSYVKPI 347

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE--VNRKTAIRKLRLPGKL 453
           V+    D    Y  +NPIEA  ++   +  +  R   +K R+    + +      LPGKL
Sbjct: 348 VQKMTFDVLCKYFEENPIEAKAIMNKALMAARGREAAKKARDLTRKKDSLNSVGTLPGKL 407

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC       +E+++VEGDSAGGSAKQ R+R+ QA+LPLRGKILNV  +  +KI  +++I
Sbjct: 408 ADCQSKDPSESEIYLVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKSRLDKILKSEEI 467

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            +++ A GC    ++  E LRY K+IIMTDADVDG+HI +LLLTFF++ +  +IE  +++
Sbjct: 468 KNMITAFGCGIGEEFDPEKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFLTPIIENGYVY 527

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK------GKIEISRFKGLGEMLASQ 627
           L  PPL+R  +G K +Y  DE+   + L E    G+       K  I   K    ++A+ 
Sbjct: 528 LAQPPLYRYKKGKKEIYLKDEKALNEFLIETGIEGEDFEGVGNKDLIDYLK----IIAA- 582

Query: 628 LKETAMDANKR----TLLRVEINKDLNSLKDTQDSINKLMGTKADERF 671
            +   MD  KR     ++R  I       K+  +    +   K ++  
Sbjct: 583 YRSILMDLKKRFNVLIVIRYMIENPDVIAKNYNELFEII-KKKLEDEK 629



 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           ++LE+ +K+ K    I R+KGLGEM  SQL ET M+   R LL++    D+++L+   + 
Sbjct: 690 EVLEDIEKNAKKGAYIQRYKGLGEMNPSQLWETTMNPENRRLLKI----DVSNLQTASEI 745

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
               MG + + R  +IQ  A  +  + 
Sbjct: 746 FELFMGDEVEPRRDYIQAHAKDVKHLD 772


>gi|297379696|gb|ADI34583.1| DNA gyrase, B subunit [Helicobacter pylori v225d]
          Length = 775

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 230/576 (39%), Positives = 337/576 (58%), Gaps = 17/576 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY + SI++L+GLE VR RPGMYIG T+   LHH+  EV+DNA+DE +AG+ + I ++L
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVGGLHHMVYEVVDNAVDESMAGFCDTINITL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV+ HP         ++LT LHAGGKFDN TY++SGGLHGVG+SV
Sbjct: 62  TDEGSCIVEDNGRGIPVDIHP-TEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDK 219
           VNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +   + GT I F PD  +    
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F A  L K  +  AYL+  +K  +  +K          +E +++  GLK +++   + 
Sbjct: 181 -EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLQETYFYEDGLKQFVKDSAK- 231

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
           + L++  I     +++      V  A A  + N    S+ N I T EGGTHE+G ++ L+
Sbjct: 232 KELLTPVISFKSMDEETRTSIEVALAYAD-DYNENTLSFVNNIKTSEGGTHEAGFKMGLS 290

Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + I +Y +     R    IS+D+    + ++S+ + EP F GQTK+KL S  A+  V   
Sbjct: 291 KAILQYIDENIKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKL 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + D    +L +NP EA  +    +  ++ R   +K RE   +K  +    LPGKLADC  
Sbjct: 351 VYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  +   KI  +++I +++ 
Sbjct: 411 KDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMIT 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A GC  +  +  E LRY K+IIMTDADVDG+HI +LL+TFFY+ +  LIEQ H+++   P
Sbjct: 471 AFGCGIQESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           L++  +G   +Y  D       L E   HG   ++I
Sbjct: 531 LYKYKKGKTEIYLKDSVALDHFLIE---HGINSVDI 563



 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
             LEE + H K    I R+KGLGEM  + L ET M    R+L++++I      L+ T   
Sbjct: 692 AFLEEVENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIED----LEKTDAV 747

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            +  MG + + R  FIQ  A  +  + 
Sbjct: 748 FSLCMGDEVEPRRAFIQAHAKDVKQLD 774


>gi|268678647|ref|YP_003303078.1| DNA gyrase subunit beta [Sulfurospirillum deleyianum DSM 6946]
 gi|268616678|gb|ACZ11043.1| DNA gyrase, B subunit [Sulfurospirillum deleyianum DSM 6946]
          Length = 770

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 234/587 (39%), Positives = 332/587 (56%), Gaps = 25/587 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY A +I++L+GLE VR RPGMYIG T+   LHHL  EV+DN++DE +AGY   I+V L
Sbjct: 2   SNYGADNIKVLKGLEAVRKRPGMYIGDTNINGLHHLIYEVVDNSIDEAMAGYCTNIKVEL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   + DNGRGIPV  H +  N S   ++LT LHAGGKFD  TY++SGGLHGVG+SV
Sbjct: 62  TREGSAIITDNGRGIPVGWH-EGENMSAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS +L  T+ R+     Q+F+ GIP++PL+   K  N+ GT I F PD  IF     
Sbjct: 121 VNALSSKLVATIKREGNEHRQEFACGIPVTPLDVV-KTTNRTGTIIEFWPDATIFETT-E 178

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F    L    +  AYL+ ++       ++          E ++F GG+K ++    +   
Sbjct: 179 FQFEILATRFRELAYLNPKITIELKDQRD-------GRTELYHFEGGIKQFVLDLNKKEK 231

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALTR 340
           +  +  +T   E        ++ A+ +     EI   + N I T +GGTHESG R  LTR
Sbjct: 232 VAEAVHYTASVED-----VEIDIAMMYNSTYSEILYSFVNNIKTIDGGTHESGFRAGLTR 286

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  Y  L     ++   I  DD+    + I+SV + EP+F GQTK KL S   +  V+ 
Sbjct: 287 AITNYISLNAGVREKDSKITGDDVREGLIAIVSVKVPEPQFEGQTKGKLGSSYVKPIVQK 346

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            + +    Y  +NPIEA  ++   +  +  R   +  R+   RK A+    LPGKLADC 
Sbjct: 347 LVYEQLVKYFEENPIEAKAIMNKALMAARGREAAKNARDLTRRKDAMSIGTLPGKLADCQ 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                  EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  +  +KI  + +I +++
Sbjct: 407 SKDPSVCELYLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSRLDKILKSDEIKNMI 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALGC    ++ EE LRY K+IIMTDADVDG+HI +LLLTF ++ +  +++  +++L  P
Sbjct: 467 TALGCGIGDEFNEEKLRYHKLIIMTDADVDGSHIQTLLLTFLFRFLRPIVDNGYVYLAQP 526

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
           PL+R  +G K +Y  D+      L E    G   I+I    G+G   
Sbjct: 527 PLYRYKKGKKEIYLKDDTEMNAFLIE---SGMDSIDIE---GIGTND 567



 Score =  133 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 20/166 (12%)

Query: 527 QYREEDLRYEKVIIMTDADVDGAHIAS-------LLLTFFYQEMYDLIEQKHLFLISPPL 579
           Q   ++L Y  +    + +     I +       LL   FY     L E+   ++ +   
Sbjct: 617 QSYIQNLGYNILNHYVNEESIHLFIQTKDGLEELLLDESFYTN--PLYEEAR-YIFT--- 670

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
            +I +  +     D      +L+E +K  K    I R+KGLGEM   QL ET M+   R 
Sbjct: 671 -KIQE--RDFDVFDGRDPIDVLDEIEKSAKKGAYIQRYKGLGEMNPEQLWETTMNPENRR 727

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           LL+V++       +   D+    MG + + R ++IQ+ A  +  + 
Sbjct: 728 LLQVKVED----AEIASDTFTLFMGDEVEPRRQYIQDHAKDVKHLD 769


>gi|255003158|ref|ZP_05278122.1| DNA gyrase subunit B (gyrB2) [Anaplasma marginale str. Puerto Rico]
 gi|255004287|ref|ZP_05279088.1| DNA gyrase subunit B (gyrB2) [Anaplasma marginale str. Virginia]
          Length = 793

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 215/565 (38%), Positives = 331/565 (58%), Gaps = 10/565 (1%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +Y+AS+I +L GL+ V+ RPGMYIG TD+   LHH+  EVIDNA+DE +AG+ N I++ +
Sbjct: 3   SYNASAITVLRGLDAVKKRPGMYIGDTDDGSGLHHMAYEVIDNAIDEALAGFCNKIDIVI 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
            G+G + + DNGRGIP++ H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SV
Sbjct: 63  AGDGSIAITDNGRGIPIDIHEE-EGVSAAEVIMTQLHAGGKFDHNSYKVSGGLHGVGVSV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  L +T+ ++   +  +F  G  +SPL+   +  +K+GTR++F P   +F     
Sbjct: 122 VNALSSWLELTIWKEGREYFMRFENGAAVSPLKMVGECGSKKGTRVSFMPSSDVFS-HTD 180

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F  + L    +  + L+  V       +E                 G   +++    N++
Sbjct: 181 FSYSTLENRVRELSLLNSNVVITLKDMRESPAVESNFGNSLEEGSSGTAAFVEYLDRNKT 240

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTR 340
            ++  I + K    G +  +VE ++ W +     +  + N I   +GGTH +G R ALTR
Sbjct: 241 PVTKVI-SLKGMMSG-YEISVELSMCWNDSYYENMLCFTNNIRQKDGGTHLAGFRSALTR 298

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +  YA       K  ++II +D+      +LS+ + +P F+ QTK KLVS +A+  VE+
Sbjct: 299 CVNNYATSEGCLKKAKVAIIGEDVREGLTCVLSIKMPDPRFSSQTKDKLVSSEARLVVES 358

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            + +        NP  A  ++E VI  ++ R   RK RE +  K  +    LPGKLADC 
Sbjct: 359 IVFEKLSSIFETNPKLAMSVVERVIRSAKGREAARKAREVIKNKGGLDFAALPGKLADCQ 418

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           +     +ELFIVEG+SAGGSAKQ R+R  QAVL LRGKILNV   G +++ ++ +I  L+
Sbjct: 419 EKSPELSELFIVEGNSAGGSAKQGRDRRYQAVLSLRGKILNVERVGLDRMLSSSEIASLI 478

Query: 518 QALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
            A+G        +   +RY K+IIMTDADVDG+HI +LLLTFF++ M D+I + +L++  
Sbjct: 479 TAIGSSIGIGSFDVSKVRYHKIIIMTDADVDGSHIRTLLLTFFFRYMKDIISEGYLYIAQ 538

Query: 577 PPLFRITQGTKSVYAHDEEHKQKIL 601
           PPL+++T+  K  Y  ++E     +
Sbjct: 539 PPLYKLTRHRKDTYIKNDEALSDYI 563



 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 4/79 (5%)

Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667
           G+  + + RFKGLGEM A QL +T ++   RTLL+V+I+             + LMG   
Sbjct: 719 GRKDMALQRFKGLGEMNADQLWDTTLNPETRTLLKVKISDY----AAADSIFSVLMGDLV 774

Query: 668 DERFKFIQERASFIDDVGT 686
           + R  FI + A  ++++ +
Sbjct: 775 EPRRDFINDNALRVENIDS 793


>gi|329571648|gb|EGG53329.1| DNA topoisomerase 4 subunit B [Enterococcus faecalis TX1467]
          Length = 542

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 204/543 (37%), Positives = 298/543 (54%), Gaps = 21/543 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +  ++ Y+ +SI++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DE ++GY N 
Sbjct: 2   AKKINNEYNDASIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGNE 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V++  +  + V D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHG
Sbjct: 62  INVTIQKDNSICVADSGRGMPTGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHG 119

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           VG SVVNALS  L V + R    + ++F   G P+  L+K  K + + GT +TF PD  I
Sbjct: 120 VGASVVNALSKWLEVHIVRDGVEYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDDTI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     F    L +  +  A+L   VK   + ++        P++E F++  G+K ++  
Sbjct: 180 FSTTN-FSYEILAERLRESAFLLKGVKITLTDER-----GEEPKEEVFHYEEGIKEFVAY 233

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
             E +  ++         K+G     VE A  + +   E   S+ N + T +GGTHE G+
Sbjct: 234 LNEEKDTLTPV-VYFSGAKEGI---EVELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGM 289

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390
           + ++T+   +YA       ++  ++   D       +LS+ + E   +F GQTK KL + 
Sbjct: 290 KTSMTKAYNEYARKVGLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTP 349

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---L 447
            A+  V+N + +    YL +N   +  L+   I+  E R   RK RE +R    RK    
Sbjct: 350 LARTVVDNVVGEQMGFYLQENSEMSQSLIRKAIKAREAREAARKAREESRNGKKRKKGES 409

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            L GKL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I
Sbjct: 410 LLSGKLTPAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDI 469

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N++I  ++  +G     ++  ED  Y+K+IIMTDAD DGAHI  LLLTFFY+ M  LI
Sbjct: 470 LKNEEINTMIYTIGAGVGPEFSIEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLI 529

Query: 568 EQK 570
           E  
Sbjct: 530 EYG 532


>gi|115607076|gb|ABJ16352.1| gyrase B [Leptospirillum ferriphilum]
          Length = 731

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 210/546 (38%), Positives = 315/546 (57%), Gaps = 14/546 (2%)

Query: 62  PGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENH 121
           PGMYIG T    LHHL  E++DN++DE +AG+ + I V++  +  +TV DNGRGIP   H
Sbjct: 1   PGMYIGSTGIDGLHHLVYELVDNSVDEALAGHCSEIHVTIHPDRSVTVADNGRGIPTGMH 60

Query: 122 PKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFS 181
            +   +S  E++LT LHAGGKF+N+ Y++SGGLHGVG+SVVNALS+ L + + +   I  
Sbjct: 61  AEQ-KRSAAEVVLTVLHAGGKFNNNLYKVSGGLHGVGVSVVNALSETLFLEIHQNGLIHR 119

Query: 182 QKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241
           Q + +G P +PL    +   +RGT I F PD  I      F    L    +  A+L+  +
Sbjct: 120 QTYHKGAPDAPLAVFGETA-QRGTIIRFWPDMTIMET-DQFSFDTLSHRFRELAFLNPVL 177

Query: 242 KTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
                 ++ + E       E F+F GG+++++    EN+  +   +F  KT + G+ +  
Sbjct: 178 TIHLKEEETLRE-------ETFHFEGGVQSFVSFLNENKKTLHDVLFFRKTLEDGS-QFE 229

Query: 302 VEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDD 361
           V +      EN  +  + N I T EGGTH  G R A+T+ I ++    Q  +   +  +D
Sbjct: 230 VAFQYQESTENETVLGFANNIHTREGGTHVRGFRTAITKTINRFIREKQLNKGEEVRGED 289

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
           +     GI+SV I  P+F GQTK KL S      +E+ L +       ++P+ A K+ E 
Sbjct: 290 VREGLTGIISVRIPGPQFEGQTKAKLGSSWVAGAMESFLSEALQEKFEEDPLTAKKIAEK 349

Query: 422 VIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
            +  ++ R   RK ++   RK  +    LPGKLADC ++    +EL+IVEGDSAGGSAKQ
Sbjct: 350 AVLTAQAREAARKAKDLAKRKNVLEGSNLPGKLADCQESDPAKSELYIVEGDSAGGSAKQ 409

Query: 481 ARNRSNQAVLPLRGKILNVASAG-SEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKV 538
            R+R  QA+LPL+GKILNV  +   EK   N ++  L+ A+GC    +   E+ LRY K+
Sbjct: 410 GRDRRFQAILPLKGKILNVEKSRGIEKFITNDEVRALITAVGCGLGEEEFSEKKLRYHKI 469

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQ 598
           IIMTDADVDGAHI +LLLTFF++ M  LI+ + +++  PPL++++ G +  Y  ++E  Q
Sbjct: 470 IIMTDADVDGAHIRTLLLTFFFRHMNPLIDGQFVYIAQPPLYKVSYGRQERYLLNDEALQ 529

Query: 599 KILEEF 604
             + E 
Sbjct: 530 AYILEL 535



 Score = 39.8 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 5/46 (10%)

Query: 580 FRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
           F + +G   + V           LE      + K+ I R+KGLGEM
Sbjct: 689 FVLRRGAEGEEVRFRSPRELLSFLET---PVRQKLSIQRYKGLGEM 731


>gi|222475176|ref|YP_002563592.1| DNA gyrase subunit B (gyrB2) [Anaplasma marginale str. Florida]
 gi|222419313|gb|ACM49336.1| DNA gyrase subunit B (gyrB2) [Anaplasma marginale str. Florida]
          Length = 793

 Score =  460 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 215/565 (38%), Positives = 331/565 (58%), Gaps = 10/565 (1%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +Y+AS+I +L GL+ V+ RPGMYIG TD+   LHH+  EVIDNA+DE +AG+ N I++ +
Sbjct: 3   SYNASAITVLRGLDAVKKRPGMYIGDTDDGSGLHHMAYEVIDNAIDEALAGFCNKIDIVI 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
            G+G + + DNGRGIP++ H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SV
Sbjct: 63  AGDGSIAITDNGRGIPIDIHEE-EGVSAAEVIMTQLHAGGKFDHNSYKVSGGLHGVGVSV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  L +T+ ++   +  +F  G  +SPL+   +  +K+GTR++F P   +F     
Sbjct: 122 VNALSSWLELTIWKEGREYFMRFENGAAISPLKMVGECGSKKGTRVSFMPSSDVFS-HTD 180

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F  + L    +  + L+  V       +E                 G   +++    N++
Sbjct: 181 FSYSTLENRVRELSLLNSNVVITLKDMRESPAVESNFGNSLEEGSSGTAAFVEYLDRNKT 240

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTR 340
            ++  I + K    G +  +VE ++ W +     +  + N I   +GGTH +G R ALTR
Sbjct: 241 PVTKVI-SLKGMMSG-YEISVELSMCWNDSYYENMLCFTNNIRQKDGGTHLAGFRSALTR 298

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +  YA       K  ++II +D+      +LS+ + +P F+ QTK KLVS +A+  VE+
Sbjct: 299 CVNNYATSEGCLKKAKVAIIGEDVREGLTCVLSIKMPDPRFSSQTKDKLVSSEARLVVES 358

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            + +        NP  A  ++E VI  ++ R   RK RE +  K  +    LPGKLADC 
Sbjct: 359 IVFEKLSSIFETNPKLAMSVVERVIRSAKGREAARKAREVIKNKGGLDFAALPGKLADCQ 418

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           +     +ELFIVEG+SAGGSAKQ R+R  QAVL LRGKILNV   G +++ ++ +I  L+
Sbjct: 419 EKSPELSELFIVEGNSAGGSAKQGRDRRYQAVLSLRGKILNVERVGLDRMLSSSEIASLI 478

Query: 518 QALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
            A+G        +   +RY K+IIMTDADVDG+HI +LLLTFF++ M D+I + +L++  
Sbjct: 479 TAIGSSIGIGSFDVSKVRYHKIIIMTDADVDGSHIRTLLLTFFFRYMKDIISEGYLYIAQ 538

Query: 577 PPLFRITQGTKSVYAHDEEHKQKIL 601
           PPL+++T+  K  Y  ++E     +
Sbjct: 539 PPLYKLTRHRKDTYIKNDEALSDYI 563



 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 4/79 (5%)

Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667
           G+  + + RFKGLGEM A QL +T ++   RTLL+V+I+             + LMG   
Sbjct: 719 GRKDMALQRFKGLGEMNADQLWDTTLNPETRTLLKVKISDY----AAADSIFSVLMGDLV 774

Query: 668 DERFKFIQERASFIDDVGT 686
           + R  FI + A  ++++ +
Sbjct: 775 EPRRDFINDNALRVENIDS 793


>gi|165922503|ref|ZP_02219674.1| DNA gyrase, B subunit [Coxiella burnetii RSA 334]
 gi|165916708|gb|EDR35312.1| DNA gyrase, B subunit [Coxiella burnetii RSA 334]
          Length = 779

 Score =  460 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 216/534 (40%), Positives = 325/534 (60%), Gaps = 19/534 (3%)

Query: 65  YIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           YIG TD+   LHH+  EV+DN++DE +AG+ + I V++  +G ++V DNGRGIP + HP+
Sbjct: 1   YIGDTDDGSGLHHMVFEVVDNSIDEALAGFCSHIWVTIHADGSVSVRDNGRGIPTDIHPE 60

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
              +S  E+I+T LHAGGKFD + Y++SGGLHGVGISVVNALS+EL++T+ +   I++Q 
Sbjct: 61  -EGRSAAEVIMTVLHAGGKFDKNAYKVSGGLHGVGISVVNALSEELYMTIRQNGNIYTQT 119

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           +  G+P +PL    K  +K GT I F+P   IF +   F    L K  +  A+L+  V+ 
Sbjct: 120 YKMGVPQAPLAVTGK-SDKTGTEIRFKPSNAIFSNT-EFHYDILAKRLRELAFLNLGVRI 177

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
             + ++           + F + GG+K +++   + ++ I S++F   TEK       VE
Sbjct: 178 ELTDERS-------GRGDIFEYEGGIKAFVEHLNKKKTPIHSDVFHFSTEKNDI---VVE 227

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISD 360
            A+ W +     I  + N I  ++GGTH +G R ALTR +  Y E      K  ++I  D
Sbjct: 228 VAMQWNDGFQETIFCFTNNIPQNDGGTHLAGFRAALTRTLNNYIEGEALAKKSKVTISGD 287

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D       +LSV + +P+F+ QTK KLVS + +  VE+ +      YL++NP +A  +  
Sbjct: 288 DTREGLTVVLSVKVPDPKFSSQTKDKLVSSEVKPVVESTVAKQLHDYLLENPKQARIIAM 347

Query: 421 WVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
            VI+ +  R   RK      RK  +    LPGKLADC +      ELF+VEGDSAGGSAK
Sbjct: 348 KVIDAARAREAARKARDMTRRKNVLDLGGLPGKLADCQEKDPALCELFLVEGDSAGGSAK 407

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
           QAR+R  QA+LPL+GKILNV  A  +K+ ++ ++  L+ ALGC   + +Y  + LRY ++
Sbjct: 408 QARDRRYQAILPLKGKILNVEKARFDKMLSSAEVGTLITALGCGIGKEEYNPDKLRYHRI 467

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAH 592
           I+MTDADVDG+HI +LLLTFFY++M +LIE+ H+++  PPL+++ +  +  Y  
Sbjct: 468 ILMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIAQPPLYKVKKSKQEQYVK 521



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 8/106 (7%)

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           + +    +        H  + LE F + GK  + I R+KGLGEM   QL ET MD   R 
Sbjct: 681 YIVRNDKRR----TVTHFGEALEWFIEEGKKGLNIQRYKGLGEMNPDQLWETTMDRESRR 736

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           LL V I   +       +    LMG + + R  FI++ A  ++++ 
Sbjct: 737 LLSVSIEDAVM----ADEIFTTLMGDQVEPRRLFIEQNALAVENLD 778


>gi|210134704|ref|YP_002301143.1| DNA gyrase subunit B [Helicobacter pylori P12]
 gi|210132672|gb|ACJ07663.1| DNA gyrase subunit B [Helicobacter pylori P12]
          Length = 773

 Score =  460 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 228/576 (39%), Positives = 335/576 (58%), Gaps = 17/576 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY + SI++L+GLE VR RPGMYIG T+   LHH+  EV+DNA+DE +AG+ + I ++L
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVGGLHHMVYEVVDNAVDESMAGFCDTINITL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV+ HP         ++LT LHAGGKFDN TY++SGGLHGVG+SV
Sbjct: 62  TDEGSCIVEDNGRGIPVDIHP-TERIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDK 219
           VNALS  L +T+ ++  I+ Q+F +GIP S LE   K +   + GT I F PD  +    
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPTSELEIIGKTKSTKESGTTIEFFPDESVMEVV 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F A  L K  +  AYL+  +K  +  +K          +E +++  GLK +++   + 
Sbjct: 181 -EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLQETYFYEDGLKQFVKDSAK- 231

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
           + L++  I     +++      V  A    + N    S+ N I T EGGTHE+G ++ L+
Sbjct: 232 KELLTPIISFKNMDEETRTSIEVALAYTD-DYNENTLSFVNNIKTSEGGTHEAGFKMGLS 290

Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + I +Y +     +    IS+D+    + ++S+ + EP F GQTK+KL S  A+  V   
Sbjct: 291 KAILQYIDNNIKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKL 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + D    +L +NP EA  +    +  ++ R   +K RE   +K  +    LPGKLADC  
Sbjct: 351 VYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  +   KI  +++I +++ 
Sbjct: 411 KDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMIT 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A GC  +  +  E LRY K+IIMTDADVDG+HI +LL+TFFY+ +  LIEQ H+++   P
Sbjct: 471 AFGCGIQESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           L++  +G   +Y  D       L E   HG   ++I
Sbjct: 531 LYKYKKGKTEIYLKDSVALDHFLIE---HGINSVDI 563



 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
             LEE + + K    I R+KGLGEM  + L ET M    R+L++++I      L+ T   
Sbjct: 690 AFLEEVENYAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIED----LEKTDAV 745

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            +  MG + + R  FIQ  A  +  + 
Sbjct: 746 FSLCMGDEVEPRRAFIQAHAKDVKQLD 772


>gi|254483322|ref|ZP_05096553.1| DNA gyrase, B subunit [marine gamma proteobacterium HTCC2148]
 gi|214036417|gb|EEB77093.1| DNA gyrase, B subunit [marine gamma proteobacterium HTCC2148]
          Length = 778

 Score =  460 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 214/544 (39%), Positives = 320/544 (58%), Gaps = 20/544 (3%)

Query: 64  MYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122
           MYIG TD+   LHH+  E++DN++DE +AG+ + I++ +  +  +TV D+GRGIP E H 
Sbjct: 1   MYIGDTDDGTGLHHMVFEIVDNSIDEALAGHCSRIDIVIHPDESVTVSDDGRGIPTEMHE 60

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
                S  E+I+T LHAGGKFD++TY++SGGLHGVG+SVVNALS EL +T+ R   ++ Q
Sbjct: 61  --EGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGVGVSVVNALSSELLLTIRRDGKLYEQ 118

Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
            +  G+P +PLE         GT + F P  + F +   F   +L K  +  A+L+  V 
Sbjct: 119 TYRHGVPAAPLEMVGDT-ETSGTSVRFHPSNQTFTNI-EFHFDQLGKRLRELAFLNSGVC 176

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
                ++   E       E + + GGL  ++    +N++ I+   +      +G     V
Sbjct: 177 IALKDERSGQE-------EIYSYEGGLNAFVDYLNKNKTPINKPFYFQIDTDEGV---GV 226

Query: 303 EWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359
           E A+ W +   E    Y N I   +GGTH +G R ALTR +  Y E      K A++   
Sbjct: 227 EVALQWNDSFQENLLCYTNNIPQRDGGTHLAGFRAALTRNLNNYIEKEGLAKKAAVNTTG 286

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD       I+SV + +P+F+ QTK KLVS + +  VE A+   F  +L++NP EA  ++
Sbjct: 287 DDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKTAVEQAMNARFGEFLLENPQEAKAVV 346

Query: 420 EWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
             +++ +  R   RK R    RK A+    LPGKLADC +      EL++VEGDSAGGSA
Sbjct: 347 GKMLDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALCELYLVEGDSAGGSA 406

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537
           KQ RNR  QA+LPL+GKILNV  A  +K+  + ++  +V ALGC   + ++  + LRY  
Sbjct: 407 KQGRNRKFQAILPLKGKILNVEKARFDKMLGSAEVGTIVTALGCGIGKEEFNPDKLRYHN 466

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           +IIMTDADVDG+HI +LLLTFF+++M +L+E+ H+++  PPL++I +G +  Y  D+E  
Sbjct: 467 IIIMTDADVDGSHIRTLLLTFFFRQMRELVERGHVYIAQPPLYKIARGKQHQYLKDDEAL 526

Query: 598 QKIL 601
            + L
Sbjct: 527 NQYL 530



 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G K+++        + L+      +    I R+KGLGEM   QL ET MD   R +L
Sbjct: 681 IQRGEKTLHTQS---FAEALDWLMTEARKGYTIQRYKGLGEMNPEQLWETTMDPEVRRML 737

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG   + R  FI+E A  + ++ 
Sbjct: 738 QVTIEDAI----AADQIFTTLMGDNVEPRRDFIEENALSVANLD 777


>gi|148990420|ref|ZP_01821586.1| DNA gyrase subunit B [Streptococcus pneumoniae SP6-BS73]
 gi|147924325|gb|EDK75418.1| DNA gyrase subunit B [Streptococcus pneumoniae SP6-BS73]
          Length = 587

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 214/588 (36%), Positives = 325/588 (55%), Gaps = 22/588 (3%)

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGVG S
Sbjct: 9   IEPDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 67

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L V V +   I  Q++ RG  ++ LE      ++ GT + F PDP+IF +  
Sbjct: 68  VVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFTPDPEIFTETT 126

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD  +L K  Q  A+L+  ++   +  ++  E     + + +++ GG+ +Y++   EN+
Sbjct: 127 IFDFDKLNKRIQELAFLNRGLQISITDKRQGLE-----QTKHYHYEGGIASYVEYINENK 181

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
            +I         E       TVE A+ +     E   S+ N I T EGGTHE G R ALT
Sbjct: 182 DVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALT 238

Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA   +  +    ++  +D+      ++SV    P+F GQTKTKL + +  +   
Sbjct: 239 RVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 298

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
               + F  +L++NP  A +++E  ++        +R +    +K+ +    LPGKLADC
Sbjct: 299 RLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADC 358

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++I  L
Sbjct: 359 SSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 418

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
             A+G    +++     RY+K+++MTDADVDGAHI +LLLT  Y+ M  ++E  ++++  
Sbjct: 419 FTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQ 478

Query: 577 PPLFRITQGTKSV-YAHDEEHKQKILEEFKK---HGKGKIEISRFKGLGEMLASQLKETA 632
           PP++ +  G++   Y      ++  L+E       G+ K  I R+KGLGEM   QL ET 
Sbjct: 479 PPIYGVKVGSEIKEYIQPGADQEIKLQEALACYSEGRTKPTIQRYKGLGEMDDHQLWETT 538

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           MD   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 539 MDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 582


>gi|56416812|ref|YP_153886.1| DNA gyrase subunit B [Anaplasma marginale str. St. Maries]
 gi|254995014|ref|ZP_05277204.1| DNA gyrase subunit B [Anaplasma marginale str. Mississippi]
 gi|56388044|gb|AAV86631.1| DNA gyrase subunit B [Anaplasma marginale str. St. Maries]
          Length = 793

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 215/565 (38%), Positives = 331/565 (58%), Gaps = 10/565 (1%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +Y+AS+I +L GL+ V+ RPGMYIG TD+   LHH+  EVIDNA+DE +AG+ N I++ +
Sbjct: 3   SYNASAITVLRGLDAVKKRPGMYIGDTDDGSGLHHMAYEVIDNAIDEALAGFCNKIDIVI 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
            G+G + + DNGRGIP++ H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SV
Sbjct: 63  AGDGSIAITDNGRGIPIDIHEE-EGVSAAEVIMTQLHAGGKFDHNSYKVSGGLHGVGVSV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  L +T+ ++   +  +F  G  +SPL+   +  +K+GTR++F P   +F     
Sbjct: 122 VNALSSWLELTIWKEGREYFMRFENGAAVSPLKMVGECGSKKGTRVSFMPSSAVFS-HTD 180

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F  + L    +  + L+  V       +E                 G   +++    N++
Sbjct: 181 FSYSTLENRVRELSLLNSNVVITLKDMRESPAVESNFGNSLEEGSSGTAAFVEYLDRNKT 240

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTR 340
            ++  I + K    G +  +VE ++ W +     +  + N I   +GGTH +G R ALTR
Sbjct: 241 PVTKVI-SLKGMMSG-YEISVELSMCWNDSYYENMLCFTNNIRQKDGGTHLAGFRSALTR 298

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +  YA       K  ++II +D+      +LS+ + +P F+ QTK KLVS +A+  VE+
Sbjct: 299 CVNNYATSEGCLKKAKVAIIGEDVREGLTCVLSIKMPDPRFSSQTKDKLVSSEARLVVES 358

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            + +        NP  A  ++E VI  ++ R   RK RE +  K  +    LPGKLADC 
Sbjct: 359 IVFEKLSSIFETNPKLAMSVVERVIRSAKGREAARKAREVIKNKGGLDFAALPGKLADCQ 418

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           +     +ELFIVEG+SAGGSAKQ R+R  QAVL LRGKILNV   G +++ ++ +I  L+
Sbjct: 419 EKSPELSELFIVEGNSAGGSAKQGRDRRYQAVLSLRGKILNVERVGLDRMLSSSEIASLI 478

Query: 518 QALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
            A+G        +   +RY K+IIMTDADVDG+HI +LLLTFF++ M D+I + +L++  
Sbjct: 479 TAIGSSIGIGSFDVSKVRYHKIIIMTDADVDGSHIRTLLLTFFFRYMKDIISEGYLYIAQ 538

Query: 577 PPLFRITQGTKSVYAHDEEHKQKIL 601
           PPL+++T+  K  Y  ++E     +
Sbjct: 539 PPLYKLTRHRKDTYIKNDEALSDYI 563



 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 4/79 (5%)

Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667
           G+  + + RFKGLGEM A QL +T ++   RTLL+V+I+             + LMG   
Sbjct: 719 GRKDMALQRFKGLGEMNADQLWDTTLNPETRTLLKVKISDY----AAADSIFSVLMGDLV 774

Query: 668 DERFKFIQERASFIDDVGT 686
           + R  FI + A  ++++ +
Sbjct: 775 EPRRDFINDNALRVENIDS 793


>gi|317180279|dbj|BAJ58065.1| DNA gyrase subunit B [Helicobacter pylori F32]
          Length = 773

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 230/576 (39%), Positives = 337/576 (58%), Gaps = 17/576 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY + SI++L+GLE VR RPGMYIG T+   LHH+  EV+DNA+DE +AG+ + I ++L
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVGGLHHMVYEVVDNAVDESMAGFCDTINITL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV+ HP         ++LT LHAGGKFDN TY++SGGLHGVG+SV
Sbjct: 62  TDEGSCIVEDNGRGIPVDIHP-TEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDK 219
           VNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +   + GT I F PD  +    
Sbjct: 121 VNALSKLLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F A  L K  +  AYL+  +K  +  +K          +E +++  GLK +++   + 
Sbjct: 181 -EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLQETYFYEDGLKQFVKDSAK- 231

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
           + L++  I     +++      V  A A  + N    S+ N I T EGGTHE+G ++ L+
Sbjct: 232 KELLTPVISFKSMDEETRTSIEVALAYAD-DYNENTLSFVNNIKTSEGGTHEAGFKMGLS 290

Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + I +Y +     R    IS+D+    + ++S+ + EP F GQTK+KL S  A+  V   
Sbjct: 291 KAILQYIDENIKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKL 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + D    +L +NP EA  +    +  ++ R   +K RE   +K  +    LPGKLADC  
Sbjct: 351 VYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  +   KI  +++I +++ 
Sbjct: 411 KDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMIT 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A GC  +  +  E LRY K+IIMTDADVDG+HI +LL+TFFY+ +  LIEQ H+++   P
Sbjct: 471 AFGCGIQESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           L++  +G   +Y  D       L E   HG   ++I
Sbjct: 531 LYKYKKGKTEIYLKDSVALDHFLIE---HGINSVDI 563



 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
             LEE + H K    I R+KGLGEM  + L ET M    R+L++++I      L+ T   
Sbjct: 690 AFLEEVENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIED----LEKTDAV 745

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            +  MG + + R  FIQ  A  +  + 
Sbjct: 746 FSLCMGDEVEPRRAFIQAHAKDVKQLD 772


>gi|269958766|ref|YP_003328553.1| DNA gyrase subunit B [Anaplasma centrale str. Israel]
 gi|269848595|gb|ACZ49239.1| DNA gyrase subunit B [Anaplasma centrale str. Israel]
          Length = 793

 Score =  459 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 215/565 (38%), Positives = 331/565 (58%), Gaps = 10/565 (1%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +Y+AS+I +L GL+ V+ RPGMYIG TD+   LHH+  EVIDNA+DE +AG+ N I++ +
Sbjct: 3   SYNASAITVLRGLDAVKKRPGMYIGDTDDGSGLHHMAYEVIDNAIDEALAGFCNKIDIVI 62

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
            G+G + + DNGRGIP++ H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SV
Sbjct: 63  AGDGSIAITDNGRGIPIDIHEE-EGVSAAEVIMTQLHAGGKFDHNSYKVSGGLHGVGVSV 121

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  L +T+ ++   +  +F  G  +SPL+   +  +K+GTR++F P   +F     
Sbjct: 122 VNALSSWLELTIWKEGREYFMRFENGAAVSPLKMVGECGSKKGTRVSFMPSSGVFS-HTD 180

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F  + L    +  + L+  V       +E                 G   +++    N++
Sbjct: 181 FSYSTLENRVRELSLLNSNVVITLKDMRESPAVESNFGNSLEEGSSGTAAFVEYLDRNKT 240

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTR 340
            ++  I + K    G +  +VE ++ W +     +  + N I   +GGTH +G R ALTR
Sbjct: 241 PVTKVI-SLKGMMSG-YEISVELSMCWNDSYYENMLCFTNNIRQKDGGTHLAGFRSALTR 298

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +  YA       K  ++II +D+      +LS+ + +P F+ QTK KLVS +A+  VE+
Sbjct: 299 CVNNYATSEGCLKKAKVAIIGEDVREGLTCVLSIKMPDPRFSSQTKDKLVSSEARLVVES 358

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            + +        NP  A  ++E VI  ++ R   RK RE +  K  +    LPGKLADC 
Sbjct: 359 IVFEKLSSIFETNPKLAMSVVERVIRSAKGREAARKAREVIKNKGGLDFAALPGKLADCQ 418

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           +     +ELFIVEG+SAGGSAKQ R+R  QAVL LRGKILNV   G +++ ++ +I  L+
Sbjct: 419 EKSPELSELFIVEGNSAGGSAKQGRDRRYQAVLSLRGKILNVERVGLDRMLSSSEIASLI 478

Query: 518 QALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
            A+G        +   +RY K+IIMTDADVDG+HI +LLLTFF++ M D+I + +L++  
Sbjct: 479 TAIGSSIGIGSFDVSKVRYHKIIIMTDADVDGSHIRTLLLTFFFRYMKDIISEGYLYIAQ 538

Query: 577 PPLFRITQGTKSVYAHDEEHKQKIL 601
           PPL+++T+  K  Y  ++E     +
Sbjct: 539 PPLYKLTRHRKDTYIKNDEALSDYI 563



 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 4/79 (5%)

Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667
           G+  + + RFKGLGEM A QL +T ++   RTLL+V+I+             + LMG   
Sbjct: 719 GRKDMALQRFKGLGEMNADQLWDTTLNPETRTLLKVKISDY----AAADSIFSVLMGDLV 774

Query: 668 DERFKFIQERASFIDDVGT 686
           + R  FI + A  ++++ +
Sbjct: 775 EPRRDFINDNALRVENIDS 793


>gi|311696597|gb|ADP99470.1| DNA gyrase subunit B-like protein [marine bacterium HP15]
          Length = 779

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 216/551 (39%), Positives = 325/551 (58%), Gaps = 19/551 (3%)

Query: 64  MYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122
           MYIG TD+   LHH+  E++DN++DE +AGY + I V +  +  +TV DNGRGIPV+ H 
Sbjct: 1   MYIGDTDDGTGLHHMVFELVDNSIDEALAGYCSEIGVIIHPDESVTVKDNGRGIPVDLHE 60

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
           +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS  L +T+ R N ++ Q
Sbjct: 61  E-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSSTLTLTIRRDNKVYEQ 119

Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
            ++ G+P +PL    +  +  GT++ F P P+ F     F    L K  +  A+L+  V+
Sbjct: 120 TYTHGVPNAPLAAVGET-DASGTKVHFIPSPETFT-HIEFHYDILAKRLRELAFLNSGVR 177

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
              + ++   E       E F + GGL+ +++    N++ I+      +  + G     V
Sbjct: 178 IRLTDERSGKE-------EVFEYEGGLRAFVEHLNSNKTPINRVFHFNREREDGI---AV 227

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359
           E ++ W +     I  + N I   +GGTH +G R ALTR +  Y E      K  ++   
Sbjct: 228 EVSMQWNDAFQENIYCFTNNIPQRDGGTHLAGFRAALTRSLNNYIEQEGLGKKAKVATSG 287

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD       I+SV + +P+F+ QTK KLVS + +  VE  L   F  YL + P EA  ++
Sbjct: 288 DDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQELYQSFAEYLQEQPNEAKLIV 347

Query: 420 EWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
             ++E +  R   RK      RK A+    LPGKLADC +     +EL+IVEGDSAGGSA
Sbjct: 348 NKMLEAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSA 407

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537
           KQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++  L+ ALGC   R ++  + LRY  
Sbjct: 408 KQGRDRKTQAILPLKGKILNVEKARFDKMLSSAEVGTLITALGCGIGREEFNPDKLRYHS 467

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           +IIMTDADVDG+HI +LLLTF +++M ++IE+ H+F+  PPL+++ +G +  Y  DE+ K
Sbjct: 468 IIIMTDADVDGSHIRTLLLTFLFRQMREIIERGHVFIAMPPLYKVKRGKQEQYLKDEKAK 527

Query: 598 QKILEEFKKHG 608
           +  L +    G
Sbjct: 528 EAYLTQTALEG 538



 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            +  L+   K  +  + I R+KGLGEM   QL ET MD   R +++V I   +       
Sbjct: 694 FEGALDWLMKEAQRGLNIQRYKGLGEMNPEQLWETTMDPETRRMMKVTIEDAI----AAD 749

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FIQ  A  + ++ 
Sbjct: 750 QIFTTLMGDDVEPRRNFIQTNALEVTNLD 778


>gi|257439262|ref|ZP_05615017.1| DNA gyrase subunit B [Faecalibacterium prausnitzii A2-165]
 gi|257198304|gb|EEU96588.1| DNA gyrase subunit B [Faecalibacterium prausnitzii A2-165]
          Length = 663

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 179/666 (26%), Positives = 307/666 (46%), Gaps = 31/666 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y   SI  L+G + VR RP +  G    +   H   E++ N++DE   G+ + I V+ 
Sbjct: 5   QEYGNESITSLKGADRVRKRPAVIFGSDGVEGCAHSIFEIVSNSIDEARDGHGDTINVTR 64

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF--DNSTYEISGGLHGVGI 159
             +G + V D GRG+PV+ +     +   E++   ++AGGK+      YE S GL+G+G+
Sbjct: 65  CKDGSVIVEDFGRGMPVDWNN-GEGRYNWELLFCEMYAGGKYGEGEDNYEFSLGLNGLGL 123

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
                 S  +   + R    +   F RG  +  L+K+     + G+ I ++PD ++F D 
Sbjct: 124 CATQYASAWMTADIYRDGFHYHLDFKRGENVGGLQKEPYKGRRTGSIIHWKPDDEVFTD- 182

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
                +    + + +A ++  +   ++ +KE     G P KE + +  G+  Y+Q     
Sbjct: 183 IDVPGSYYKDVLRRQAVVNAGLTLNFTDEKEKDPATGKPWKESWCYQNGIADYVQEVAGE 242

Query: 280 RSLISSEIFTGKT-----EKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGL 334
            +L        +      E +  ++  +  A  +  +   +  Y N+   + GG+ E  +
Sbjct: 243 DTLTPVFSCESEASGRDREDQPDYKVRMSAAFCFSNKVQLLEYYHNSSWLEHGGSPEHAV 302

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R A    I KY +      K   +I   D+    V + S F     +  QTK  + +   
Sbjct: 303 RTAFVYQINKYLKDKNLYKKGESAISFQDVQDCLVYVSSSFSTRTSYENQTKKAITNKFV 362

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK---TAIRKLRL 449
            + + + L+   + Y ++ P EA K+ + V+   + R    K R+  +K   T I     
Sbjct: 363 SQAMTDFLKHYLEVYFLEKPEEAQKICQQVLVNKQSREHAEKTRQSIKKTLSTQIDLANR 422

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
             K  DC    A   EL+IVEGDSA G+ KQ+R+   QA++P+RGKILN   A   +I  
Sbjct: 423 VQKFVDCRTKDASRRELYIVEGDSAMGAVKQSRDSEYQAIMPIRGKILNCLKADYARIFK 482

Query: 510 NQQIMDLVQALGCRTRSQYREED---------LRYEKVIIMTDADVDGAHIASLLLTFFY 560
           +  I+DL++ +GC      +            LRY K++I TDADVDG  I +L+LT  Y
Sbjct: 483 SDVIVDLIKVMGCGVELGGKHNKELATFNIDNLRYNKIVICTDADVDGYQIRTLVLTMLY 542

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           +    LI + ++++   PL+ IT   ++ +A+ E  K   L+E    G  K  I R KGL
Sbjct: 543 RLTPTLINEGYVYIAESPLYEITTKDRTYFAYTEPEKAAFLKEI---GDKKYTIQRSKGL 599

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER-AS 679
           GE     +  T M+   R L++V        +++T    + L+G     R + I +  A 
Sbjct: 600 GENDPEMMWLTTMNPESRRLIKV----LPTDVEETARVFDLLLGDNLAGRKEHIAQHGAE 655

Query: 680 FIDDVG 685
           ++DD+ 
Sbjct: 656 YLDDLD 661


>gi|72388563|gb|AAZ67925.1| DNA gyrase subunit B [Psychrobacter proteolyticus]
          Length = 743

 Score =  458 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 206/547 (37%), Positives = 326/547 (59%), Gaps = 19/547 (3%)

Query: 61  RPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119
           RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I++ +  +  ++V+DNGRG+PV+
Sbjct: 1   RPGMYIGDTDDGTGLHHMVFEVVDNSLDEALAGHCDQIDIVIHEDESVSVMDNGRGVPVD 60

Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179
            HP+    S  ++I+T LH GGKFD++ Y++SGGLHGVG+SVVNALS +L + + R+   
Sbjct: 61  IHPE-EGVSAAQVIMTVLHVGGKFDDNRYKVSGGLHGVGVSVVNALSQKLEMNIWREGYH 119

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
           + Q ++ G+P S +++ E   ++ GT+I F P   +F     F+   L K  +  ++L+ 
Sbjct: 120 YHQTYTDGVPDSDIQQMEAT-DQTGTQIRFYPSSDVFTGTI-FEYDILAKRLRELSFLNS 177

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            V+   + ++       I ++ EF   GGL  ++      +  I+        +  G   
Sbjct: 178 GVRIVLTDER-------IDKRHEFEHKGGLLEFVSYINAGKDGINEVFHFTSQQDDGI-- 228

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
            +VE A+ W +    ++  + N I   +GGTH SG   ALTR +  Y +      K  ++
Sbjct: 229 -SVEVALQWTDTYNEKVLCFTNNIPQKDGGTHLSGXXSALTRCLNSYMDRENLFKKEKVA 287

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
              DD       I+SV  +   F+ QTK KLVS + +  VE+A+ D F+ YL++NP    
Sbjct: 288 ATGDDAREGLTAIVSVKYQIQNFSSQTKDKLVSSEVKSAVESAMHDKFNDYLLENPGAGK 347

Query: 417 KLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            +   +I+ +  R   RK      RKT +    LPGKLADC +     +EL+IVEGDSAG
Sbjct: 348 AIANKIIDAARARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPVLSELYIVEGDSAG 407

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLR 534
           GSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ +L+ ALGC     +Y  + +R
Sbjct: 408 GSAKQGRSRKTQAILPLKGKILNVERARFDKMLSSAEVGNLITALGCGIGPDEYNPDKVR 467

Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDE 594
           Y K+IIMTDADVDG+HI +LLLTFF+++  +LIE+ ++++  PPL+++ +G + +Y  D+
Sbjct: 468 YHKIIIMTDADVDGSHIRTLLLTFFFRQTPELIERGYVYIAQPPLYKVKKGRQELYLKDD 527

Query: 595 EHKQKIL 601
           E  +  L
Sbjct: 528 EALKAYL 534


>gi|327539175|gb|EGF25802.1| DNA gyrase subunit B [Rhodopirellula baltica WH47]
          Length = 869

 Score =  458 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 219/630 (34%), Positives = 330/630 (52%), Gaps = 32/630 (5%)

Query: 1   MTDDSI-DLFSTLPPQSQ-----------GSSEKLKKSGEIPDSPAFANQSASDNYDASS 48
           M+D S  D  S  P +             G+S +     + P        SA+  Y    
Sbjct: 1   MSDSSSTDPASNNPSEDPNAVPAGAASGDGNSAEANAGPQRPVERVSTGPSANSEYTDKD 60

Query: 49  IRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLT 108
           +  L  LE VR RPGMYIG T  + LHHL  EV+DN++DE +AG+A  + V +  +G +T
Sbjct: 61  LLHLSDLEHVRERPGMYIGDTTVRGLHHLVYEVVDNSIDEAMAGFAKSVSVIVHTDGSVT 120

Query: 109 VVDNGRGIPVENHPKFPN-----KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           V D+GRG+PV  H +         STLE ++T L  GGKF+   Y+ SGGLHGVG++VVN
Sbjct: 121 VEDDGRGVPVTRHDQLSEELDREVSTLEGVMTVLKFGGKFEKGAYQTSGGLHGVGVTVVN 180

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
            LS    V V+R  + ++Q + RGIP  P++K  +   K GT+ TF+ D +IF     ++
Sbjct: 181 FLSQWAEVEVSRDGSTWTQGYERGIPTGPIQK-GRPTKKTGTKTTFKADGQIFSVT-KYN 238

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L K  Q  A+L+  V+  +  ++         E  ++ +  G+  +++       ++
Sbjct: 239 FDTLQKRLQELAFLNSGVRIKFLDER-------NGEGGDYQYDRGIVEFVEHLNRASDVL 291

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
             ++     EK G      + A+ +  E    + SY N I T EGGTH SG R ALTR +
Sbjct: 292 HGDVIQFVGEKDGV---EYDMALQYSTEFTETVQSYVNNIHTIEGGTHVSGFRSALTRTL 348

Query: 343 KKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRD 402
             Y +     +  +   DD       ++SV +  P+F GQTKTKL + +    + + + +
Sbjct: 349 NNYGKKEGLFKNTTPTGDDFREGLTAVISVRVPHPQFEGQTKTKLGNGEVDGIITSGVGE 408

Query: 403 PFDHYLVQNPIEATKLLEW--VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
             + YL +NP  A  ++    +   + E  R+ K +   RK A+    LPGKL DC    
Sbjct: 409 ALNKYLEENPRTAKAIVRKGLLAAEAREAARKAKDQLRKRKDALGGGGLPGKLRDCISKN 468

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
               E+++VEGDSAGGSA+  R R  QA+LPLRGKI+N   +  +K+  N+++  ++QA+
Sbjct: 469 MEECEVYLVEGDSAGGSAEGGRMREYQAILPLRGKIINAYKSREDKVLANEEVQSMIQAI 528

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           G    +       RY KVIIMTDADVDG+HI +LLL FFY++MY L+   H+++  PPLF
Sbjct: 529 GTGIGADQDLSRRRYNKVIIMTDADVDGSHIRTLLLCFFYRQMYQLVAAGHVYVAQPPLF 588

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           R++QG    Y   EE  +  L E   +   
Sbjct: 589 RVSQGKNRYYIQSEEEMKGQLLERGLNDTR 618



 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 4/91 (4%)

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
           E  + +L E +  G+  ++++RFKGLGEM A +L+ET +D   RTL++V +         
Sbjct: 782 EDLRDLLPEVRAAGEKGLQVTRFKGLGEMNAEELRETTLDPANRTLVKVNLTDAG----A 837

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
             +    LMG K + R +FI+  A  + ++ 
Sbjct: 838 ADEMFRLLMGDKVEPRREFIETHALDVRNLD 868


>gi|32475718|ref|NP_868712.1| DNA gyrase subunit B [Rhodopirellula baltica SH 1]
 gi|32446261|emb|CAD76089.1| DNA gyrase subunit B [Rhodopirellula baltica SH 1]
          Length = 897

 Score =  458 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 219/630 (34%), Positives = 330/630 (52%), Gaps = 32/630 (5%)

Query: 1   MTDDSI-DLFSTLPPQSQ-----------GSSEKLKKSGEIPDSPAFANQSASDNYDASS 48
           M+D S  D  S  P +             G+S +     + P        SA+  Y    
Sbjct: 29  MSDSSSTDPASNNPSEDPNAVPAGAASGDGNSAEANAGPQRPVERVSTGPSANSEYTDKD 88

Query: 49  IRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLT 108
           +  L  LE VR RPGMYIG T  + LHHL  EV+DN++DE +AG+A  + V +  +G +T
Sbjct: 89  LLHLSDLEHVRERPGMYIGDTTVRGLHHLVYEVVDNSIDEAMAGFAKSVSVIVHTDGSVT 148

Query: 109 VVDNGRGIPVENHPKFPN-----KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           V D+GRG+PV  H +         STLE ++T L  GGKF+   Y+ SGGLHGVG++VVN
Sbjct: 149 VEDDGRGVPVTRHDQLSEELDREVSTLEGVMTVLKFGGKFEKGAYQTSGGLHGVGVTVVN 208

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
            LS    V V+R  + ++Q + RGIP  P++K  +   K GT+ TF+ D +IF     ++
Sbjct: 209 FLSQWAEVEVSRDGSTWTQGYERGIPTGPIQK-GRPTKKTGTKTTFKADGQIFSVT-KYN 266

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L K  Q  A+L+  V+  +  ++         E  ++ +  G+  +++       ++
Sbjct: 267 FDTLQKRLQELAFLNSGVRIKFLDER-------NGEGGDYQYDRGIVEFVEHLNRASDVL 319

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
             ++     EK G      + A+ +  E    + SY N I T EGGTH SG R ALTR +
Sbjct: 320 HGDVIQFVGEKDGV---EYDMALQYSTEFTETVQSYVNNIHTIEGGTHVSGFRSALTRTL 376

Query: 343 KKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRD 402
             Y +     +  +   DD       ++SV +  P+F GQTKTKL + +    + + + +
Sbjct: 377 NNYGKKEGLFKNTTPTGDDFREGLTAVISVRVPHPQFEGQTKTKLGNGEVDGIITSGVGE 436

Query: 403 PFDHYLVQNPIEATKLLE--WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
             + YL +NP  A  ++    +   + E  R+ K +   RK A+    LPGKL DC    
Sbjct: 437 ALNKYLEENPRTAKAIVRKGLLAAEAREAARKAKDQLRKRKDALGGGGLPGKLRDCISKN 496

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
               E+++VEGDSAGGSA+  R R  QA+LPLRGKI+N   +  +K+  N+++  ++QA+
Sbjct: 497 MEECEVYLVEGDSAGGSAEGGRMREYQAILPLRGKIINAYKSREDKVLANEEVQSMIQAI 556

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           G    +       RY KVIIMTDADVDG+HI +LLL FFY++MY L+   H+++  PPLF
Sbjct: 557 GTGIGADQDLSRRRYNKVIIMTDADVDGSHIRTLLLCFFYRQMYQLVAAGHVYVAQPPLF 616

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           R++QG    Y   EE  +  L E   +   
Sbjct: 617 RVSQGKNRYYIQSEEEMKGQLLERGLNDTR 646



 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 4/91 (4%)

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
           E  +++L E +  G+  ++++RFKGLGEM A +L+ET +D   RTL++V +         
Sbjct: 810 EDLRELLPEVRAAGEKGLQVTRFKGLGEMNAEELRETTLDPANRTLVKVNLTDAG----A 865

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
             +    LMG K + R +FI+  A  + ++ 
Sbjct: 866 ADEMFRLLMGDKVEPRREFIETHALDVRNLD 896


>gi|94983857|gb|ABF50633.1| DNA topoisomerase IV subunit B [Spiroplasma mirum]
 gi|158954866|gb|ABW84390.1| DNA topoisomerase IV subunit B [Spiroplasma mirum]
          Length = 554

 Score =  458 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 210/571 (36%), Positives = 304/571 (53%), Gaps = 26/571 (4%)

Query: 67  GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           G TD + LHHL  E++DN++DE +AG+A+ I + +  N  +TV DNGRG+P+  H     
Sbjct: 1   GSTDIRGLHHLVWEIVDNSIDEALAGFASEINIIIHKNNGITVKDNGRGVPIGKH--ASG 58

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           KST E+I + LHAGGKF    Y+ SGGLHGVG SVVNALS E  VT+ R   I   KF+ 
Sbjct: 59  KSTPEVIFSILHAGGKFGGDGYKTSGGLHGVGSSVVNALSSEFDVTIYRDKKISKIKFNN 118

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  L+            GT + F PDP+IF     F  + + +  +  A+L+  +K    
Sbjct: 119 GGKLAQKLTTIGSATTTGTTVYFVPDPEIFKVI-DFSFSTISERIRESAFLNSGLKITLQ 177

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
            ++         +  E+ F  GL+ ++    E +  I+  I     EK       ++++ 
Sbjct: 178 DER-------TDKYVEYLFNNGLEEFITYMNEGKKPITPIIIFKGMEKDIDVEIALQYST 230

Query: 307 AWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMI 364
              E N  + S+ N + T +GG+H  G R  LT+ I +YA       ++  ++ S D   
Sbjct: 231 ---EFNENLLSFANNVKTSDGGSHVVGFRTGLTKVINEYARKEGLLKEKDKNLDSTDTRE 287

Query: 365 SAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
               I+SV I E   ++ GQTK KL + D +  VEN +      ++++N   A  ++E  
Sbjct: 288 GLTAIISVKIPESLIQYEGQTKGKLGTSDVKMAVENIVAKQMQFWMLENKTNAYAIIEKA 347

Query: 423 IERSEERLRRRKQREVNRKTAIRKLR---LPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +     +   RK RE  R    +      L GKL           ELF+VEGDSAGGSAK
Sbjct: 348 LLARTAKEEARKAREAARGNKRKSNSERLLTGKLTPAQNKNKKVNELFLVEGDSAGGSAK 407

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
             R+R  QA+L LRGK++N   A  + + NN++I  ++ A+G    + +  ED  Y K+I
Sbjct: 408 SGRDRKFQAILSLRGKVINAEKAKLQDLMNNEEINLMIHAIGAGLGNSFDLEDANYGKII 467

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT--QGTKSVYAHDEEHK 597
           IMTDAD DGAHI +LLLTFFY+ M  LIE K +++  PPLF+IT  +  K  YA +E   
Sbjct: 468 IMTDADTDGAHIQTLLLTFFYRFMRPLIEDKRVYIALPPLFKITNLKSKKVSYAWNENEL 527

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           +  L+  K     K E+ R+KGLGEM A QL
Sbjct: 528 KTKLKHLKD----KFELQRYKGLGEMNAEQL 554


>gi|70704907|gb|AAZ06865.1| DNA gyrase subunit B [Acholeplasma vituli]
          Length = 538

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 208/552 (37%), Positives = 316/552 (57%), Gaps = 17/552 (3%)

Query: 68  GTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNK 127
            T E+ LHHL  E++DN++DE + GYA+ I + +     + V D+GRGIPV+ H K   K
Sbjct: 1   STGERGLHHLVWEIVDNSIDESMVGYASEISLEIQKGNIIRVTDDGRGIPVDIHAK-TKK 59

Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187
           S +E ILT LHAGGKFD  +Y++SGGLHGVG SVVNALS    VT+ R   ++ Q++ +G
Sbjct: 60  SAVETILTVLHAGGKFDGKSYKVSGGLHGVGASVVNALSSWFRVTIRRNGLLYQQEYKKG 119

Query: 188 IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247
           IP   L+   +     GT I F+ DP++F +   +D   L    Q  A+L+  +K     
Sbjct: 120 IPQYDLKVIGEST-HTGTEIEFQADPEVFTETTTYDFETLRNRIQELAFLNRHIKISIED 178

Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307
            +        P + E+ + GG++ Y+     N+ ++  EI   + E       TVE A+ 
Sbjct: 179 QR-----GETPVRFEYQYEGGIQEYVTFLNGNKGIVHPEIVYAQKEVDNI---TVELALQ 230

Query: 308 WCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMIS 365
           + +     + S+ N I T EGG HE G ++ALTR I  YA+     K+  S I +D    
Sbjct: 231 YNDSYATNVFSFTNNIHTHEGGMHEDGFKLALTRVIGNYAKDNNILKKDESFIGEDTREG 290

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              I+SV    P+F GQTKTKL + + ++ V     +  + +L++NP  A  +++ V+  
Sbjct: 291 LTAIISVKHPNPQFEGQTKTKLGNPEVRQIVSQITGEALERFLLENPTAAKSIMDKVLMA 350

Query: 426 SEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           S  R+  RK +E  R+ + +  L    KLADC       +E++IVEGDSAGGSAKQ R+ 
Sbjct: 351 SRARIAARKAKEATRRKSPLDMLGFASKLADCRNRKPEESEIYIVEGDSAGGSAKQGRDS 410

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
           + QA+LPLRGK+LNV  A  +K  +N++I+ ++QA G      +     RY K++IMTDA
Sbjct: 411 AFQAILPLRGKVLNVEKARLDKALSNKEILSMIQAFGTGIGEDFDITKARYHKIVIMTDA 470

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           DVDGAHI +L+LTF ++ M  LI+  ++++  PPL+++  G +  Y +DEE  + +LE+ 
Sbjct: 471 DVDGAHIRTLMLTFLFRYMKPLIDFGYVYVAQPPLYKVQSGKRIEYVYDEERLRVVLEQM 530

Query: 605 KKHGKGKIEISR 616
                G+  I R
Sbjct: 531 G----GRPAIQR 538


>gi|198283802|ref|YP_002220123.1| DNA topoisomerase IV subunit B [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218666865|ref|YP_002426433.1| DNA topoisomerase IV, subunit B [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198248323|gb|ACH83916.1| DNA topoisomerase (ATP-hydrolyzing) [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218519078|gb|ACK79664.1| DNA topoisomerase IV, subunit B [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 656

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 221/669 (33%), Positives = 342/669 (51%), Gaps = 46/669 (6%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y A    +L+GLEPV++RPGMY   T      H+  EVIDNA DE +AG A  I+V++ 
Sbjct: 2   SYSAEQFTVLKGLEPVKLRPGMY---TRTTCPTHVIQEVIDNAADEALAGQATRIDVTVC 58

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN----STYEISGGLHGVG 158
            +G + V DNGRGIPV   P   ++   E+  TTLHAGGKFD     S Y  SGGLHGVG
Sbjct: 59  EDGSVIVEDNGRGIPVGI-PPGESRPAAELAFTTLHAGGKFDKTDVESAYRFSGGLHGVG 117

Query: 159 ISVVNALSDELHVTVA-RQNT-----IFSQKFSRGIPLSPLEKKEKVRNKR-GTRITFRP 211
           ++V NALS  + V +  R         +   F++G     L + E    +  GTR+   P
Sbjct: 118 VAVTNALSQRVEVEIKTRDPQGSGNGRYRLVFTQGDVSEALTRLEDCGPRTHGTRVQVWP 177

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           D + F   A  +   L  + ++KA L   ++   +            E   + +  GL  
Sbjct: 178 DGQYFDS-AKINIRELTHLLRAKAILLPGLQVSLTL--------PEQEPLVWKYSEGLAE 228

Query: 272 YLQTKLENRSLISSEI---FTGKTEKKGTHRGT-VEWAIAWCE-ENPEITSYCNTILTDE 326
           YL   + +  L +           +  G  +G    WA+ W     P   +Y N I T +
Sbjct: 229 YLAGIVADIELATPIFAGASYQDGDSNGFAKGEGAGWALCWINGAAPNPETYVNLIPTLD 288

Query: 327 GGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GGTHESG R  +   ++ + E        + ++ DD+      +LS  + +P+F GQTK 
Sbjct: 289 GGTHESGFRAGVFEAVRSFMEHHSLVPAKLKLVQDDVTGKMALVLSARVLDPQFQGQTKD 348

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIR 445
           KL S DA + +   +RDP + +L  +P     + +  I+ ++ R R  ++ E  + + + 
Sbjct: 349 KLTSRDAHKLMAQTVRDPLELWLNSHPGAGKAIADLAIQNAQARTRAAQKIERKKGSGLA 408

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
            L  PGKL DC        ELF+VEGDSAGGSAK AR++  QA+LPLRGK+LN     ++
Sbjct: 409 TL--PGKLTDCESEDIQRNELFLVEGDSAGGSAKAARDKEYQALLPLRGKVLNTWEVDAD 466

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREED-----LRYEKVIIMTDADVDGAHIASLLLTFFY 560
           +I  NQ++ ++  ALG        + D     LRY K++I++DADVDG+HI  L+LT F 
Sbjct: 467 QIFKNQEVHNMAVALGIEAHGFQADPDRVLAGLRYGKIMILSDADVDGSHIQVLILTLFL 526

Query: 561 QEMYDLIEQKHLFLISPPLFRI---TQGT-KSVYAHDEEHKQKILEEFKKHG--KGKIEI 614
           +    L+++ H+F++ PPL+R+    +G  + +Y   E  +   ++  +  G  +  I +
Sbjct: 527 RHFPALLQRGHVFVVKPPLYRVDTTWRGKARKIYCEAEAERDAAIDRLRTEGVKESAISV 586

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKF 673
            RFKGLGEM   QL ET+M  + R+L+ + +     +   T    + LM  + A  R ++
Sbjct: 587 QRFKGLGEMNPDQLWETSMCPDTRSLVPLSMTAADQAALHT--RFSLLMAKQSAGGRREW 644

Query: 674 IQERASFID 682
           ++      D
Sbjct: 645 MERDGWTAD 653


>gi|317179129|dbj|BAJ56917.1| DNA gyrase subunit B [Helicobacter pylori F30]
          Length = 773

 Score =  456 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 227/576 (39%), Positives = 335/576 (58%), Gaps = 17/576 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y + SI++L+GLE VR RPGMYIG T+   LHH+  EV+DNA+DE + G+ + I ++L
Sbjct: 2   QSYQSHSIKVLKGLEGVRKRPGMYIGDTNVGGLHHMVYEVVDNAVDESMVGFCDTINITL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV+ HP         ++LT LHAGGKFDN TY++SGGLHGVG+SV
Sbjct: 62  TDEGSCIVEDNGRGIPVDIHP-TEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDK 219
           VNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +   + GT I F PD  +    
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F A  L K  +  AYL+  +K  +  +K          +E +++  GLK +++   + 
Sbjct: 181 -EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLQETYFYEDGLKQFVKDSAK- 231

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
           + L++  I     +++      V  A A  + N    S+ N I T EGGTHE+G ++ L+
Sbjct: 232 KELLTPVISFKSMDEETRTSIEVALAYAD-DYNENTLSFVNNIKTSEGGTHEAGFKMGLS 290

Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + I +Y +     R    IS+D+    + ++S+ + EP F GQTK+KL S   +  V   
Sbjct: 291 KAILQYIDENIKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYVRALVSKL 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + D    +L +NP EA  +    +  ++ R   +K RE   +K  +    LPGKLADC  
Sbjct: 351 VYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQS 410

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  +   KI  +++I +++ 
Sbjct: 411 KDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMIT 470

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A GC  +  +  E LRY K+IIMTDADVDG+HI +LL+TFFY+ +  LIEQ H+++   P
Sbjct: 471 AFGCGIQESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAP 530

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           L++  +G   +Y  D       L E   HG   ++I
Sbjct: 531 LYKYKKGKTEIYLKDSIALDHFLIE---HGINSVDI 563



 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
             LEE + H K    I R+KGLGEM  + L ET M    R+L++++I      L+ T   
Sbjct: 690 AFLEEVENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIED----LEKTDAV 745

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            +  MG + + R  FIQ  A  +  + 
Sbjct: 746 FSLCMGDEVEPRRAFIQAHAKDVKQLD 772


>gi|115381158|gb|ABI96228.1| DNA gyrase subunit B [Spiroplasma alleghenense]
          Length = 552

 Score =  456 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 225/565 (39%), Positives = 323/565 (57%), Gaps = 16/565 (2%)

Query: 67  GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           G T+E  LHHL  E+IDN++DE +AG+AN I V +  N  + V DNGRGIP++ HP+   
Sbjct: 1   GTTNEVGLHHLIWEIIDNSIDETLAGFANTITVVITNNNEIIVKDNGRGIPIDIHPE-TK 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           KS LE + T LHAGGKF + TY+ISGGLHGVG SVVNALS  + V V R N I  Q FS 
Sbjct: 60  KSALETVFTVLHAGGKFSSDTYKISGGLHGVGASVVNALSLYVEVMVLRDNKIHRQVFSD 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G       +     + +GT + F+PDP+IF +   FD   +    +  A+L+  V     
Sbjct: 120 GGTKISALEIIGNTDVQGTLVKFKPDPEIFKETINFDFKTIQNKLKQMAFLNRGVTINLY 179

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   E         + F  G++ Y+      ++ I+  +F+            +E+A+
Sbjct: 180 DQRSDKEIS-------YNFENGIEDYVTEINSGKNKINENVFSVNESFNDI---AIEFAM 229

Query: 307 AWCEENPEITS-YCNTILTDEGGTHESGLRVALTRGIKKYAELT-QNKRAISIISDDLMI 364
            + +   E    +CN I T EGGTHE GLR AL + I  Y   + +N +      DD+  
Sbjct: 230 QYNDSYTENLFSFCNNIFTSEGGTHEEGLRQALVKVINNYLNESTKNVKKTKFTWDDIKE 289

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
             V +LS+   +P+F GQTK KL +LDA+  V   + +    YL++NP ++ K++E  + 
Sbjct: 290 GIVCVLSIKHMDPQFEGQTKAKLSNLDAKEAVNQVITEKLKDYLLKNPEDSKKIIEKNML 349

Query: 425 RSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483
             + R+   + RE   RK+A+    LPGKLADC    A   EL++VEGDSAGGSAK  RN
Sbjct: 350 SQKARIAAMRAREDTRRKSALDNFSLPGKLADCESKDADLCELYLVEGDSAGGSAKTGRN 409

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTD 543
           R  QA+LPLRGK+LNV      +   N +I  +V A+G   +     E +RY+K+IIMTD
Sbjct: 410 RKYQAILPLRGKVLNVEKVKEGRAFENTEIQSIVTAIGTGIKDNLDLEKIRYKKIIIMTD 469

Query: 544 ADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEE 603
           ADVDGAHI +LLLTFFY+ M  +++  ++++  PPL++I  G K+ YA++++  + +  E
Sbjct: 470 ADVDGAHIRTLLLTFFYRYMNKIVKNGNIYVAQPPLYKIEAGKKNAYAYNDQELEVLKAE 529

Query: 604 FKKHGKGKIEISRFKGLGEMLASQL 628
             K    K  I R+KGLGEM   QL
Sbjct: 530 QFKD--LKYTIQRYKGLGEMDPIQL 552


>gi|160943136|ref|ZP_02090373.1| hypothetical protein FAEPRAM212_00616 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445605|gb|EDP22608.1| hypothetical protein FAEPRAM212_00616 [Faecalibacterium prausnitzii
           M21/2]
          Length = 699

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 171/672 (25%), Positives = 306/672 (45%), Gaps = 31/672 (4%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
           ++ +    Y   SI  L+G + VR RP +  G    +   H   E++ N++DE   G+ +
Sbjct: 35  SSMAKKQEYGNESITSLKGADRVRKRPAVIFGSDGVEGCAHSIFEIVSNSIDEARDGHGD 94

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF--DNSTYEISGG 153
            I V+   +G + V D GRG+PV+ +     +   E++   ++AGGK+      YE S G
Sbjct: 95  TINVTRCKDGSVIVEDFGRGMPVDWNN-GEGRFNWELLFCEMYAGGKYGEGEDNYEFSLG 153

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           L+G+G+      S  +   + R    +   F +G  +  L+K+     + G+ I ++PD 
Sbjct: 154 LNGLGLCATQYASAWMTADIYRDGYHYHLDFKKGENVGGLQKEPYKGRRTGSIIHWKPDD 213

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           ++F D      +    + + +A ++  +   ++ +KE     G P  E + +  G+  Y+
Sbjct: 214 EVFTD-IDVPGSYYKDVLRRQAVVNAGLTLNFTDEKEKDPATGKPWHESWCYQNGIADYV 272

Query: 274 QTKLENRSLISSEIFTGKT-----EKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGG 328
                  +L        +      E +  ++  +  A  +  +   +  Y N+   + GG
Sbjct: 273 AEVAGEDTLTPVFSCESEAVGRDREDQPDYKVRMSAAFCFSNKVQLLEYYHNSSWLEHGG 332

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           + E  +R A    I KY +      K   +I   D+    V + S F     +  QTK  
Sbjct: 333 SPEHAVRTAFVYQINKYLKEKNLYKKGESTISFQDVQDCLVYVSSSFSTRTSYENQTKKA 392

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK---TA 443
           + +    + + + L+   + Y ++ P EA K+ + V+   + R    K R+  +K   T 
Sbjct: 393 ITNKFVSQAMTDFLKHYLEVYFLEKPEEAQKICQQVLVNKQSREHAEKTRQSIKKTLSTQ 452

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           I       K  DC    +   EL+IVEGDSA G+ K +R+   QA++P+RGKILN   A 
Sbjct: 453 IDLANRVQKFVDCRTRDSARRELYIVEGDSAMGAVKSSRDSEYQAIMPIRGKILNCLKAD 512

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREED---------LRYEKVIIMTDADVDGAHIASL 554
             +I  +  I+DL++ +GC      +            LR+ K++I TDADVDG  I +L
Sbjct: 513 YARIFKSDVIVDLIKVMGCGVELGGKHNKELATFNLDNLRFNKIVICTDADVDGYQIRTL 572

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LT  Y+    LI + ++++   PL+ IT   ++ +A+ E  K   L++    G  K  I
Sbjct: 573 VLTMLYRLTPTLINKGYVYIAESPLYEITTKDRTYFAYTESEKAAFLQKI---GDKKYTI 629

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
            R KGLGE     +  T M+   R L++V     + + +      + L+G     R + I
Sbjct: 630 QRSKGLGENDPEMMWLTTMNPESRRLIKVMPTDVVQTAQ----VFDILLGDNLAGRKEHI 685

Query: 675 QER-ASFIDDVG 685
            +  A ++DD+ 
Sbjct: 686 AQHGAEYLDDLD 697


>gi|331007621|ref|ZP_08330763.1| DNA gyrase subunit B [gamma proteobacterium IMCC1989]
 gi|330418561|gb|EGG93085.1| DNA gyrase subunit B [gamma proteobacterium IMCC1989]
          Length = 780

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 216/552 (39%), Positives = 324/552 (58%), Gaps = 21/552 (3%)

Query: 64  MYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122
           MYIG TD+   LHH+  E++DN++DE +AG+ + I+V +  +  ++V DNGRGIP E H 
Sbjct: 1   MYIGDTDDGTGLHHMVFEIVDNSIDEALAGHCSEIKVIIHPDESVSVSDNGRGIPTEIHE 60

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
                S  E+I+T LHAGGKFD++TY++SGGLHGVG+SVVNALS EL +T+ RQ  +  Q
Sbjct: 61  --EGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGVGVSVVNALSSELKMTIRRQGKVHEQ 118

Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
            +  G+P +PL        + GT + F+P  + F +   F   +L K  +  ++L+  V+
Sbjct: 119 IYKHGVPQAPLAVIGDT-ERSGTEVHFKPSAETFTNI-KFYFDQLAKRLRELSFLNSGVR 176

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT-EKKGTHRGT 301
                ++   E       E F + GGL  ++     N++ I+  +      E+ G    +
Sbjct: 177 IVLKDERSAKE-------EIFEYEGGLHAFVAYLNTNKNPINKVMHFSSYREEDGV---S 226

Query: 302 VEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISII 358
           VE A+ W +   E    Y N I   +GGTH +G R ALTRG+  Y E      K  ++  
Sbjct: 227 VEVALQWNDSFQENLLCYTNNIPQRDGGTHLAGFRAALTRGLNSYIEKEGVLKKDKVNTT 286

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD       I+SV + +P+F+ QTK KLVS + +  VE  +   F+ YL++NP EA  +
Sbjct: 287 GDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVEQEMGKAFNDYLLENPQEAKSI 346

Query: 419 LEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           +  +IE ++ R   RK R    RK A+    LPGKLADC +     +E+++VEGDSAGGS
Sbjct: 347 VGKMIEAAKAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSEVYLVEGDSAGGS 406

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYE 536
           AKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++  L+ ALGC   ++    + LRY 
Sbjct: 407 AKQGRDRKTQAILPLKGKILNVEKARFDKMLSSVEVGTLITALGCGIGAEEFNADKLRYH 466

Query: 537 KVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEH 596
           ++IIMTDADVDG+HI +LLLTFF+++  +L+E+ H+++  PPL++I +G +  Y  DE  
Sbjct: 467 RIIIMTDADVDGSHIRTLLLTFFFRQTRELVERGHIYIAQPPLYKIAKGKQEQYIKDEAG 526

Query: 597 KQKILEEFKKHG 608
           K          G
Sbjct: 527 KTAFFTNVALDG 538



 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 7/105 (6%)

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           ++ +G +       E  ++ L+           I R+KGLGEM   QL ET MD + R +
Sbjct: 682 KVKRGEREQ---PVESFKQALDWLMSESSRGYMIQRYKGLGEMNPEQLWETTMDPSTRRM 738

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           L+V I   +            LMG   + R  FI+  A  ++++ 
Sbjct: 739 LQVTIEDAI----AADQIFTTLMGDNVEPRRDFIETNALTVENLD 779


>gi|320103192|ref|YP_004178783.1| DNA topoisomerase type IIA subunit B region 2 domain-containing
           protein [Isosphaera pallida ATCC 43644]
 gi|319750474|gb|ADV62234.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Isosphaera pallida ATCC 43644]
          Length = 889

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 207/592 (34%), Positives = 331/592 (55%), Gaps = 14/592 (2%)

Query: 22  KLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEV 81
               +     +        S++Y  + IR LEG+E +R+RP MYI  T  + LHHL  EV
Sbjct: 7   DGPPAPTAELADRLVAAVNSEDYSEAHIRDLEGIEAIRLRPAMYINDTSSQGLHHLVFEV 66

Query: 82  IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141
           +DN++DE +AGY   I V +  +G +++ D+GRGIPV    K  +KS LEI+LT  H+G 
Sbjct: 67  VDNSIDEAMAGYCKHIHVRIHPDGSVSITDDGRGIPVGRIAKH-DKSALEIVLTKPHSGA 125

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG++VVNALS+ L   V R+  I+ Q++ +G+  S ++       
Sbjct: 126 KFDHNSYKVSGGLHGVGLTVVNALSEWLEAEVRREGKIWRQEYRQGVAQSDVKAVGPAT- 184

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             GTRI F PD  IF      D   L K  +  A+L+  V    + ++   E    P+ +
Sbjct: 185 TTGTRIHFLPDATIFPSI-ELDHDTLEKRLRELAFLNKDVTIRLTDERGEGE----PKDQ 239

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSYCN 320
            F    GLK +++     ++ I   I             +VE A+ + +     + +YCN
Sbjct: 240 TFPTNTGLKGFVEYLNRAQTPIHPVIHLEGH--DEEADVSVEVALQYNDSIAENVVTYCN 297

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPE 378
            I T +GGTH +G R+ALT+ + +  +   +  K+ +++  +D       +++V +R+P+
Sbjct: 298 NISTLDGGTHLTGFRLALTKTLGQMVKTIGSSSKKDLAVSGEDFREGLTAVIAVKVRDPQ 357

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE- 437
           FA  +K KL + + +  V   + D    +L + P  A +L++  +  +E R   RK RE 
Sbjct: 358 FASNSKRKLSNPEVEGVVSRIVTDQLGRFLEETPAIAKRLVQKALLAAEAREAARKAREL 417

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
             NRK  +    LPGKL DC+      +ELF+VEGDSAGG+A+  R+R  QA+LPLRGKI
Sbjct: 418 VRNRKGVLTGGGLPGKLMDCTSQDRESSELFLVEGDSAGGTAEGGRDRLFQAILPLRGKI 477

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556
           LNV  A  +K+  N+++ +++ A+G            RY K+++M+DADVDG+HI +LL+
Sbjct: 478 LNVERARLDKVLGNEEVRNIITAVGGGIGEDEDPSKRRYGKIVMMSDADVDGSHIRTLLM 537

Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           TFFY++M  L+ + HL++  PPL+ I+Q  +  Y   E    ++L +    G
Sbjct: 538 TFFYRQMPKLVAEGHLYVAQPPLYMISQRKERRYVQTEAEMHRLLVDLGLAG 589



 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 4/78 (5%)

Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667
           G+  ++I+RFKGLGEM A QL +T MD  +RTLL+V +           D    LMG   
Sbjct: 815 GERGLKITRFKGLGEMDADQLWDTTMDPARRTLLQVRLED----AAAANDLFTTLMGDDV 870

Query: 668 DERFKFIQERASFIDDVG 685
           + R  FI++ A  + ++ 
Sbjct: 871 EPRRDFIEKHALDVKNLD 888


>gi|251771682|gb|EES52257.1| DNA gyrase, B subunit [Leptospirillum ferrodiazotrophum]
          Length = 810

 Score =  455 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 220/575 (38%), Positives = 314/575 (54%), Gaps = 14/575 (2%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           N    D Y    IRILEGLE VR+RPGMYIG T    LHHL  E++DN++DE +AGY   
Sbjct: 2   NSQIQDTYGEQQIRILEGLEAVRVRPGMYIGSTGIDGLHHLVYELVDNSVDESLAGYCTA 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV L  +  +TV DNGRGIP   HP+  N+S  E++LT LHAGGKFDN+TY++SGGLHG
Sbjct: 62  IEVILHSDRSVTVKDNGRGIPTGMHPEQ-NRSAAEVVLTVLHAGGKFDNNTYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+SVVNALS+ L + + ++   F Q + +GIP +PL             I F PD  I 
Sbjct: 121 VGVSVVNALSETLFLDIDQKGNHFRQVYHKGIPEAPLAITGTSETTGT-SIRFYPDLTIM 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                F    L    +   YL+  +            +     +E F+  GG++++L   
Sbjct: 180 ET-DAFSFDVLAHRFRELGYLNPALTIILR-------EEETLREEVFHDEGGIRSFLLFV 231

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRV 336
            EN+  I   +   K+   G+    + +      +   + SY N I T EGGTH  G R 
Sbjct: 232 NENKRTIHDPLSFRKSFDNGST-FEISFQYQDTTDAETLLSYVNNIPTREGGTHVRGFRA 290

Query: 337 ALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           ALTR + ++ +     +   +  +D+      I+S+ I  P+F GQTK KL S      +
Sbjct: 291 ALTRVVNRFIKDKNLNKGEEVRGEDIREGLSAIVSIKIPNPQFEGQTKAKLGSSWVSGAM 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
           E  L +  +    +    A  + +  I  ++ R   RK RE   RK  +    LPGKLAD
Sbjct: 351 ETFLAEALEDAFEKQGAVARAIADKAILSAQAREAARKARELTKRKNVLEGSNLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG-SEKIRNNQQIM 514
           C +N    +EL+IVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  +   EK   + ++ 
Sbjct: 411 CQENDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKGKILNVEKSKGVEKFITHDEVR 470

Query: 515 DLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
            L+ A+GC   ++      LRY K+IIMTDADVDGAHI +LLLTFF++ M  LI+  +++
Sbjct: 471 ALITAVGCGLGAEEFSLKNLRYHKIIIMTDADVDGAHIRTLLLTFFFRHMNLLIDGSYVY 530

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +  PPL+++    +  Y  +++  +  + E     
Sbjct: 531 IAQPPLYKVAFQKQERYLLNDQALEAFILEKASEK 565



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 4/77 (5%)

Query: 609 KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKAD 668
           + KI + R+KGLGEM   QL ET MD  KRTLL+V I   L    +       LMG +  
Sbjct: 737 RSKITLQRYKGLGEMNPEQLWETTMDPAKRTLLKVSIPDYL----EADRIFTILMGDQVA 792

Query: 669 ERFKFIQERASFIDDVG 685
            R +FI++ A  + ++ 
Sbjct: 793 PRREFIEQNALDVSNLD 809


>gi|154173892|ref|YP_001407307.1| DNA gyrase subunit B [Campylobacter curvus 525.92]
 gi|112803527|gb|EAU00871.1| DNA gyrase, B subunit [Campylobacter curvus 525.92]
          Length = 770

 Score =  455 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 228/572 (39%), Positives = 342/572 (59%), Gaps = 19/572 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
             +YDA +I++L+GLE VR RPGMYIG T+   LHH+  EV+DN++DE +AGY + I++ 
Sbjct: 3   EKHYDAGNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVDNSIDEAMAGYCDTIDIE 62

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +   G   V DNGRGIPV+ HP   +     ++LT LHAGGKFD  TY++SGGLHGVG+S
Sbjct: 63  ITNEGSCIVTDNGRGIPVDMHP-TEHLPAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 121

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L +T+ R   ++ Q+F +GIP++ LE   K  N+ GT++ F  D  IF    
Sbjct: 122 VVNALSKKLILTIKRDGNVYRQEFQKGIPVTALETI-KTTNRTGTQVEFFVDDSIFEVT- 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   L K  +  AYL+ ++   +   ++          E ++F GGL++++    + +
Sbjct: 180 EFDREILAKRFRELAYLNPKITINFKDQRD-------GFNESYHFEGGLESFVTDMNKAQ 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALT 339
           ++  +  F+G     G     V++A+ + +   E   S+ N I T +GGTHE+G R  LT
Sbjct: 233 AVSKAVSFSG-----GEEDVMVDFALMYNDTYSENLLSFVNNIKTPDGGTHEAGFRAGLT 287

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y        ++   I  DD+    + ++SV + EP+F GQTK KL S   +  V+
Sbjct: 288 RVITNYIAANAAVREKDTKITGDDIREGLIAVISVKVPEPQFEGQTKGKLGSSYVKPIVQ 347

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
             + D    Y  +NPIEA  ++   +  +  R   +K R+   +K  +    LPGKLADC
Sbjct: 348 KMVFDVLSKYFEENPIEARAIMNKALMAARGREAAKKARDLTRKKEGLSVGTLPGKLADC 407

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
               A  +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  +  +KI  + +I ++
Sbjct: 408 QSKDATISELYLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSRLDKILKSDEIKNM 467

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + ALGC    ++  E LRY K+IIMTDADVDG+HI +LLLTFF++ ++ +++  +++L  
Sbjct: 468 ITALGCGIGDEFDAEKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFLHQVVDNGYIYLAQ 527

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           PPL+R  +G K +Y  DE+   + L E    G
Sbjct: 528 PPLYRYKKGKKEIYLKDEKALNEFLIETGIEG 559



 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 8/112 (7%)

Query: 578 PLFR----ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
           PL+     I Q  K    + ++   +IL+E +K+ K    I R+KGLGEM   QL ET M
Sbjct: 662 PLYEEAVYINQKIKEREINFKKDVIEILDEIEKNAKKGAYIQRYKGLGEMNPEQLWETTM 721

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +   R LL++ I   +       D+ N  MG + + R  +IQ+ A  +  + 
Sbjct: 722 NPENRRLLKINIEDAI----SASDTFNLFMGDEVEPRRNYIQDHAKDVKHLD 769


>gi|295104658|emb|CBL02202.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Faecalibacterium prausnitzii SL3/3]
          Length = 663

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 173/669 (25%), Positives = 304/669 (45%), Gaps = 31/669 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +    Y   SI  L+G + VR RP +  G    +   H   E++ N++DE   G+ + I 
Sbjct: 2   AKKQEYGNESITSLKGADRVRKRPAVIFGSDGVEGCAHSIFEIVSNSIDEARDGHGDTIN 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF--DNSTYEISGGLHG 156
           V+   +G + V D GRG+PV+ +     +   E++   ++AGGK+      YE S GL+G
Sbjct: 62  VTRCKDGSVIVEDFGRGMPVDWNN-GEGRFNWELLFCEMYAGGKYGEGEDNYEFSLGLNG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           +G+      S  +   + R    +   F +G  +  L+K+     + G+ I ++PD ++F
Sbjct: 121 LGLCATQYASAWMTADIYRDGYHYHLDFKKGENVGGLQKEPYKGRRTGSIIHWKPDDEVF 180

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            D      +    + + +A ++  +   ++ +KE     G P  E + +  G+  Y+   
Sbjct: 181 TD-IDVPGSYYKDVLRRQAVVNAGLTLNFTDEKEKDPATGKPWHESWCYQNGIADYVAEV 239

Query: 277 LENRSLISSEIFTGKT-----EKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHE 331
               +L        +      E +  ++  +  A  +  +   +  Y N+   + GG+ E
Sbjct: 240 AGEDTLTPVFSCESEAVGRDREDQPDYKVRMGAAFCFSNKVQLLEYYHNSSWLEHGGSPE 299

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
             +R A    I KY +      K   +I   D+    V + S F     +  QTK  + +
Sbjct: 300 HAVRTAFVYQINKYLKEKNLYKKGESAISFQDVQDCLVYVSSSFSTRTSYENQTKKAITN 359

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK---TAIRK 446
               + + + L+   + Y ++ P EA K+ + V+   + R    K R+  +K   T I  
Sbjct: 360 KFVSQAMTDFLKHYLEVYFLEKPEEAQKICQQVLVNKQSREHAEKTRQSIKKTLSTQIDL 419

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
                K  DC    A   EL+IVEGDSA G+ K +R+   QA++P+RGKILN   A   +
Sbjct: 420 ANRVQKFVDCRTRDAARRELYIVEGDSAMGAVKSSRDSEYQAIMPIRGKILNCLKADYAR 479

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---------LRYEKVIIMTDADVDGAHIASLLLT 557
           I  +  I+DL++ +GC      +            LR+ K++I TDADVDG  I +L+LT
Sbjct: 480 IFKSDVIVDLIKVMGCGVELGGKHNKELATFNLENLRFNKIVICTDADVDGYQIRTLVLT 539

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
             Y+    LI + ++++   PL+ IT   ++ +A+ E  K   LE+    G  K  I R 
Sbjct: 540 MLYRLTPTLINKGYVYIAESPLYEITTKDRTYFAYTEPEKAAFLEKI---GDKKYTIQRS 596

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           KGLGE     +  T M+   R L++V     + + +      + L+G     R + I + 
Sbjct: 597 KGLGENDPEMMWLTTMNPESRRLIKVMPTDVVQTAQ----VFDILLGDNLAGRKEHIAQH 652

Query: 678 -ASFIDDVG 685
            A ++DD+ 
Sbjct: 653 GAEYLDDLD 661


>gi|304319868|ref|YP_003853511.1| DNA gyrase subunit B [Parvularcula bermudensis HTCC2503]
 gi|303298771|gb|ADM08370.1| DNA gyrase subunit B [Parvularcula bermudensis HTCC2503]
          Length = 770

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 222/553 (40%), Positives = 329/553 (59%), Gaps = 17/553 (3%)

Query: 64  MYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122
           MYIG TD+   LHH+  EV+DNA+DE +AGY + + V+L+ +G ++V DNGRGIP E H 
Sbjct: 1   MYIGDTDDGSGLHHMVYEVVDNAIDEALAGYCDTVTVALNADGSVSVSDNGRGIPTEIH- 59

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
                S  ++I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALSD L + + R       
Sbjct: 60  TGEGVSAAQVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLELVIYRGGKRHQM 119

Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
           +F  G P+  L    +  +K GT +TF P   IF     FD   L K  +  A+L+  VK
Sbjct: 120 RFENGDPVDDLAVMGET-DKSGTEVTFHPSADIFA-ITDFDFETLEKRLRELAFLNSGVK 177

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
              +  + +      P  EE Y+ GGL+ +++     +S I     +  TEK G     V
Sbjct: 178 IVLTDRRHVD-----PVVEELYYEGGLEAFVRYLDNAKSAIMGAPISFSTEKDG---LVV 229

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359
           + A+ W +    ++  + N I   +GGTH +G R ALTR +  YA+ +    K  +S+  
Sbjct: 230 DVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRAALTRVVNSYAQSSGLLKKEKVSLSG 289

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD       +LSV + +P+F+ QTK KLVS + +  VE+A+ +  + +  +NP +  ++ 
Sbjct: 290 DDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESAVGEALNIWFEENPGDGKRVA 349

Query: 420 EWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
           + V+E +  R   R+ RE   RK A+    LPGKLADC +     +ELF+VEGDSAGGSA
Sbjct: 350 QKVVEAAAAREAARRARELTRRKGALDISSLPGKLADCQERDPAKSELFLVEGDSAGGSA 409

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537
           KQARNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALG    +  +  + LRY K
Sbjct: 410 KQARNRENQAILPLKGKILNVERARFDKMLSSQEVGTLITALGTGIGKDDFNIDKLRYHK 469

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           ++IMTDADVDGAHI +LLLTFFY++M +++ + +L++  PPL+++++G    Y  DE   
Sbjct: 470 IVIMTDADVDGAHIRTLLLTFFYRQMPEIVRRGYLYIAQPPLYKVSRGKSEQYLIDESAL 529

Query: 598 QKILEEFKKHGKG 610
            + L      G  
Sbjct: 530 AEHLYSEGMDGAK 542



 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 5/87 (5%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           ++L+  ++ G+  I + R+KGLGEM   QL ET +DAN R LLRVEI +         D 
Sbjct: 688 RLLDAIREAGQKGISVQRYKGLGEMNPEQLWETTLDANARQLLRVEIEE----ADQADDI 743

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            ++LMG   + R +FIQE A   + + 
Sbjct: 744 FSRLMGDVVEPRREFIQENALAAE-LD 769


>gi|167772153|ref|ZP_02444206.1| hypothetical protein ANACOL_03528 [Anaerotruncus colihominis DSM
           17241]
 gi|167665951|gb|EDS10081.1| hypothetical protein ANACOL_03528 [Anaerotruncus colihominis DSM
           17241]
          Length = 661

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 175/672 (26%), Positives = 300/672 (44%), Gaps = 37/672 (5%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +  + +Y   SI  L+G + VR RPG+  G    +   H   E++ N++DE   G+ N 
Sbjct: 2   PKKRTTDYGNDSISSLKGADRVRKRPGVIFGSDGLEGCQHAMFEILSNSIDEAREGHGNK 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD---NSTYEISGG 153
           I ++   +  + + D GRGIPV+ + +   +   E++   L+AGGK+      +YE S G
Sbjct: 62  ILITRYRDQSIEIEDFGRGIPVDFN-QREGRYNWELVFCELYAGGKYQTNEGESYEYSLG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           L+G+G+      S+ + V + R    ++  F  G  +  L K+E  R + G++I ++PD 
Sbjct: 121 LNGLGLCATQYASEYMDVEIYRDGMKYTLHFEHGENVGGLHKEETRRKQTGSKIRWKPDL 180

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           ++F +         +   + +A ++  V           E     E+  F +  G+  Y+
Sbjct: 181 QVFTE-IDIPLEFYMDTIKRQAVVNDGVTFILKN-----ETASGFEETTFQYENGIVDYV 234

Query: 274 QTKLENRSLISSEIFTGK-----TEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGG 328
                   L   + +  +      E K  ++  +  A  +         Y N+   + GG
Sbjct: 235 TELAGEEPLTPVQFWKAERRGRDREDKPEYKVRLSVAFCFSNRVKRCEYYHNSSWLEYGG 294

Query: 329 THESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           + E  +++A    I  Y +      K    I   D+    V + S F  +  +  QTK  
Sbjct: 295 SPERAVKLAFVYMIDGYIKNAGKYQKGESKITFADVEDCLVLVSSSFSTQTSYENQTKKA 354

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR---EVNRKTA 443
           + +      + + LR   + Y ++NP EA ++ E V+     R    + R   +      
Sbjct: 355 ITNKFIYEAMNDFLRHQMEVYFLENPDEAARIAEQVLINKRSRENAERTRLNLKKKLAGT 414

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +       K  DC        E++IVEGDSA GS K  R+   QA++P+RGKILN   A 
Sbjct: 415 VDMSNRVQKFVDCRTKDVSRREIYIVEGDSALGSCKLGRDSEFQAIIPVRGKILNCLKAE 474

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREED---------LRYEKVIIMTDADVDGAHIASL 554
            +KI  N  I+D+ + LGC      +            LR+ K++I TDADVDG  I +L
Sbjct: 475 YDKIFKNDIIVDIFKVLGCGVEVTTKSNKEFSSFDLDGLRWNKIVICTDADVDGFQIRTL 534

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LT  ++    LIE+  +++   PL+ IT   K+ +A+ E+ K   L +    G  K  I
Sbjct: 535 ILTMLFRLAPTLIERGRVYIAESPLYEITTKDKTYFAYTEQEKAHALAQI---GDAKYTI 591

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
            R KGLGE     +  T M+   R L+RV  ++     ++T D  + L+G     R +FI
Sbjct: 592 QRSKGLGENEPDMMWLTTMNPETRRLIRVTPSQ----AQETSDMFDLLLGDNLAGRKEFI 647

Query: 675 QERA-SFIDDVG 685
            E    +++   
Sbjct: 648 AENGSRYLEMAD 659


>gi|94983847|gb|ABF50628.1| DNA topoisomerase IV subunit B [Spiroplasma chinense]
          Length = 554

 Score =  453 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 198/571 (34%), Positives = 302/571 (52%), Gaps = 26/571 (4%)

Query: 67  GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           G TD + LHHL  E++DN++DE +AG    I V+L+ +G +TV DNGRG+P+  H K  N
Sbjct: 1   GSTDSRGLHHLVWEIVDNSIDEALAGVCTEINVTLEKDGSVTVKDNGRGVPIGMH-KGSN 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           KST EII + LHAGGKF    Y+ SGGLHGVG SVVNALS +  VT+ R   I + KF+ 
Sbjct: 60  KSTPEIIFSVLHAGGKFGGDGYKTSGGLHGVGSSVVNALSSKFKVTIHRDGLISTIKFNN 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  LS   K+       GT + F PD +       F  + + +  +  A L+  +K    
Sbjct: 120 GGKLSSPLKQIGTSKVTGTMVNFLPD-ETMFSTTKFSFSTISERLKESALLNSGLKITLK 178

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
            ++         +  E+ F  GL  ++     ++  +S+ +      K    +  VE A+
Sbjct: 179 DERS-------DKYVEYLFENGLTEFVNELKGDQKALSNPVLI----KGIDSQIEVEIAL 227

Query: 307 AW-CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            +  + +  I  + N + T +GGTH +G +  L + + +Y +      ++   + S D+ 
Sbjct: 228 TYTNDFSENIMGFANNVKTSDGGTHITGFKTGLLKALNEYGKSQNIIKEKDKKLDSTDIR 287

Query: 364 ISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
              + I++V + E   ++ GQTK KL + +A+   E      F  +L +N   A  ++E 
Sbjct: 288 EGLIAIVTVKVPENLIQYEGQTKGKLGTSEARFACERITEQNFSFWLQENKTIAILIIEK 347

Query: 422 VIERSEERLRRRKQREVNRKTAIRKLRLPG--KLADCSQNIAHGTELFIVEGDSAGGSAK 479
            +   + R   RK R+  R    +        KL           ELF+VEGDSAGGSAK
Sbjct: 348 ALLARKARDEARKARQAVRDQKAKSKGKTMLGKLTPAQGKNKLNNELFLVEGDSAGGSAK 407

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
             R++  QA+LPLRGK++N        +  N++I  ++ A+G    S +  ED+ Y K+I
Sbjct: 408 SGRDKKFQAILPLRGKVINAEKTKLIDLLKNEEITTIINAIGAGIGSDFDIEDINYGKII 467

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT--QGTKSVYAHDEEHK 597
           IMTDAD DGAHI +LLLTFFY+ M +LI  K++++  PPLF++T       +Y   E+  
Sbjct: 468 IMTDADTDGAHIQTLLLTFFYRYMKELITNKNVYIAMPPLFKVTQSNKKDFIYLWTEDEL 527

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
            + +    K  K K++I R+KGLGEM A QL
Sbjct: 528 VEYM----KKSKNKVDIQRYKGLGEMNADQL 554


>gi|313115468|ref|ZP_07800933.1| DNA gyrase, B subunit, carboxyl terminus [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622178|gb|EFQ05668.1| DNA gyrase, B subunit, carboxyl terminus [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 663

 Score =  453 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 174/669 (26%), Positives = 304/669 (45%), Gaps = 31/669 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +    Y   SI  L+G + VR RP +  G    +   H   E++ N++DE   G+ + I 
Sbjct: 2   AKKQEYGNESITSLKGADRVRKRPAVIFGSDGVEGCAHSIFEIVSNSIDEARDGHGDTIN 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF--DNSTYEISGGLHG 156
           V+   +G + V D GRG+PV+ +     +   E++   ++AGGK+      YE S GL+G
Sbjct: 62  VTRCKDGSVIVEDFGRGMPVDWNN-GEGRYNWELLFCEMYAGGKYGEGEDNYEFSLGLNG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           +G+      S  +   + R    +   F +G  +  L+K+     + G+ I ++PD ++F
Sbjct: 121 LGLCATQYASAWMTADIYRDGYHYHLDFKKGENVGGLQKEAYKGRRTGSIIHWKPDDEVF 180

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            D      +      + +A ++  +   ++ +KE     G    E + +  G+  Y+   
Sbjct: 181 TD-IDVPGSYYKDTLRRQAVVNAGLTLNFTDEKEKDPATGKAWYESWCYEHGIADYVAEV 239

Query: 277 LENRSLISSEIFTGKT-----EKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHE 331
               +L        +      E +  ++  +  A  +  +   +  Y N+   + GG+ E
Sbjct: 240 AGEDTLTPVFSCESEASGRDREDQPDYKVRMSAAFCFSNKVQMLEYYHNSSWLEHGGSPE 299

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
             +R A    I KY +      K   +I   D+    V + S F     +  QTK  + +
Sbjct: 300 HAVRTAFVYQINKYLKEKNLYKKGESAISFQDVQDCLVYVSSSFSTRTSYENQTKKAITN 359

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK---TAIRK 446
               + + + L+   + Y ++ P EA K+ + V+   + R    K R+  +K   T I  
Sbjct: 360 KFVSQAMTDFLKHYLEVYFLEKPDEAQKICQQVLVNKQSREHAEKTRQSIKKTLSTQIDL 419

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
                K  DC    A   EL+IVEGDSA G+ K +R+   QA++P+RGKILN   A   +
Sbjct: 420 ANRVQKFVDCRTKDASRRELYIVEGDSAMGAVKSSRDSEYQAIMPIRGKILNCLKADYAR 479

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---------LRYEKVIIMTDADVDGAHIASLLLT 557
           I  +  I+DL++ +GC      +            LR+ K++I TDADVDG  I +L+LT
Sbjct: 480 IFKSDVIVDLIKVMGCGVELGGKHNKELATFNLDNLRFNKIVICTDADVDGYQIRTLVLT 539

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
             Y+    LIE+ ++++   PL+ IT   ++ +A+ E  K   LEE    G+ K  I R 
Sbjct: 540 MLYRLTPTLIEKGYVYIAESPLYEITTKDRTYFAYTEPEKAAFLEEI---GEKKYTIQRS 596

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           KGLGE     +  T M+   R L++V     + + +      + L+G     R + I + 
Sbjct: 597 KGLGENDPEMMWLTTMNPESRRLIKVMPTDVVQTAQ----VFDILLGDNLAGRKEHIAQH 652

Query: 678 -ASFIDDVG 685
            A ++DD+ 
Sbjct: 653 GAEYLDDLD 661


>gi|98991100|gb|ABF60568.1| DNA gyrase subunit B [Spiroplasma phoeniceum]
          Length = 557

 Score =  452 bits (1163), Expect = e-125,   Method: Composition-based stats.
 Identities = 223/562 (39%), Positives = 326/562 (58%), Gaps = 14/562 (2%)

Query: 72  KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLE 131
           + LHHL  E++DN++DEV+A +AN I++ ++ +  +TVVDNGRGIP+E HPK    STLE
Sbjct: 5   RGLHHLVWEIVDNSIDEVLANFANKIKIIINKDESITVVDNGRGIPIEIHPK-TKVSTLE 63

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
            + T LHAGGKFD++TY+ISGGLHGVG SVVNALS  L V V + N  +  +F  G  + 
Sbjct: 64  TVFTILHAGGKFDSNTYKISGGLHGVGASVVNALSKYLKVKVRKNNKKYVMEFHNGGQIL 123

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
              K+    ++ GT +TF PD KIF +   F  + +    +  A+L+  ++      +E 
Sbjct: 124 TPIKEVGSTSETGTTVTFLPDEKIFKEITIFSFSTIQNRIKQLAFLNKGLEISLVDLRED 183

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
            E+    +   + F  G+K Y+    +      +++F  +  +       VE+ + + + 
Sbjct: 184 DEE----KMVVYQFNNGIKDYVLELNKTIGTPLNDVFYVEGIEDNI---VVEFGLQYNDN 236

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR---AISIISDDLMISAV 367
               I S+CN I T EGGTHE G+++A+ R I  Y +               DD+     
Sbjct: 237 YSENIFSFCNNINTHEGGTHEEGIKLAIVREINNYFKNINKNNKGNEDKFTWDDIKEGMT 296

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            I+S+   +P++ GQTK KL + + ++ V N +      YL++NP ++ K++E +    +
Sbjct: 297 TIISIRHPDPQYEGQTKKKLGNSEVKKIVSNIVGKGLSSYLLENPEDSKKIIEKISLSLK 356

Query: 428 ERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R+  +  +E   RKT +    LPGKLADC    +   EL+IVEGDSAGGSAK  RNR  
Sbjct: 357 ARIAAQSAKETTRRKTVMDSFSLPGKLADCETKDSKIAELYIVEGDSAGGSAKSGRNRKF 416

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADV 546
           QA+LPLRGKILNV  A   KI  N +I  ++ +LG   +  + ++ LRY+KVIIMTDADV
Sbjct: 417 QAILPLRGKILNVEKAKQIKIFENNEINSIITSLGAGIKDNFNDKKLRYQKVIIMTDADV 476

Query: 547 DGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKK 606
           DGAHI  LLLTFFY+ M DLIE  ++++  PPL++I  G +  YA+ +   +   EE  K
Sbjct: 477 DGAHIRILLLTFFYRYMKDLIENGNIYIAQPPLYKIQNGNQIEYAYSDNELELYKEELLK 536

Query: 607 HGKGKIEISRFKGLGEMLASQL 628
             K    I R+KGLGEM   QL
Sbjct: 537 QNK-NYTIQRYKGLGEMNPEQL 557


>gi|224994123|dbj|BAH28874.1| DNA gyrase subunit B [Psychrobacter nivimaris]
          Length = 740

 Score =  452 bits (1163), Expect = e-125,   Method: Composition-based stats.
 Identities = 206/543 (37%), Positives = 329/543 (60%), Gaps = 19/543 (3%)

Query: 65  YIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           YIG TD+   LHH+  EV+DN++DE +AG+ + I++ +  +  ++V+DNGRG+PV+ HP+
Sbjct: 1   YIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQIDIVIHEDESVSVMDNGRGVPVDIHPE 60

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
               S  ++I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+   + Q 
Sbjct: 61  -EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLEMNIWREGYHYHQT 119

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           ++ G+P S +++ E   ++ GT+I F P   +F     F+   L K  +  ++L+  V+ 
Sbjct: 120 YTDGVPDSDIQQMEAT-DQTGTQIRFYPSSDVFTGTI-FEYDILAKRLRELSFLNSGVRI 177

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
             + ++       I ++ EF   GGL  ++      +  I+        +  G    +VE
Sbjct: 178 VLTDER-------IDKRHEFEHKGGLLEFVSYINAGKDGINEVFHFTSQQDDGI---SVE 227

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISD 360
            A+ W +    ++  + N I   +GGTH SG R ALTRG+  Y +      K  ++   D
Sbjct: 228 VALQWTDTYNEKVLCFTNNIPQKDGGTHLSGFRSALTRGLNSYMDRENLFKKEKVAATGD 287

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D       I+SV + +P+F+ QTK KLVS + +  VE+A+ D F+ YL++NP     +  
Sbjct: 288 DAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDYLLENPSAGKAIAN 347

Query: 421 WVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
            ++E +  R   RK      RKT +    LPGKLADC +     +EL+IVEGDSAGGSAK
Sbjct: 348 KIMEAARARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPVLSELYIVEGDSAGGSAK 407

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
           Q R+R  QA+LPL+GKILNV  A  +K+ ++ ++ +L+ ALGC     +Y  + +RY K+
Sbjct: 408 QGRSRKTQAILPLKGKILNVERARFDKMLSSAEVGNLITALGCGIGPDEYNPDKVRYHKI 467

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQ 598
           IIMTDADVDG+HI +LLLTFF+++  +LIE+ ++++  PPL+++ +G + +Y  D+E  +
Sbjct: 468 IIMTDADVDGSHIRTLLLTFFFRQTPELIERGYVYIAQPPLYKVKKGRQELYLKDDEALK 527

Query: 599 KIL 601
             L
Sbjct: 528 AYL 530


>gi|115381178|gb|ABI96238.1| DNA topoisomerase IV subunit B [Spiroplasma insolitum]
          Length = 554

 Score =  452 bits (1163), Expect = e-125,   Method: Composition-based stats.
 Identities = 219/572 (38%), Positives = 302/572 (52%), Gaps = 28/572 (4%)

Query: 67  GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           G TD + LHHL  E++DN++DE +AGY   I V++  N  +TV DNGRG+P   H     
Sbjct: 1   GSTDVRGLHHLVWEIVDNSIDEALAGYCTEINVTIHKNNAITVQDNGRGVPTGKH--ASG 58

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           KST EII + LHAGGKF    Y+ SGGLHGVG SVVNALS    V + R   I+  KF  
Sbjct: 59  KSTPEIIFSVLHAGGKFGGDGYKTSGGLHGVGSSVVNALSSVFDVKIYRDQKIWHIKFGN 118

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  +     +    N+ GT +TF PD KIF     F  + + +  +  A+L+  VK   +
Sbjct: 119 GGQVKQPLTQIGTTNETGTTVTFLPDSKIFKVI-DFSFSTISERIRESAFLNSGVKITLT 177

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
            D+         +  E+ F  GL+ ++    E +  I+  +     EK+      VE A+
Sbjct: 178 DDR-------ADKTVEYLFNNGLEEFISYMNEGKKNITPIVMMKGLEKE----IEVEVAL 226

Query: 307 AW-CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            +  E N  + S+ N + T EGG+H  G R  LT+ I  YA       ++  ++ S D  
Sbjct: 227 QYSTEFNENLLSFANNVKTSEGGSHVVGFRSGLTKVINDYARKEGLLKEKDKNLDSTDTR 286

Query: 364 ISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
                I+SV + E   ++ GQTK KL + DA+  VE  +   F  +L +N   A  ++E 
Sbjct: 287 EGLTAIISVKVPESLIQYEGQTKGKLGTYDARTAVEIIVTKQFGFWLTENKTSAYAIIEK 346

Query: 422 VIERSEERLRRRKQREVNRKTAIRKLRL---PGKLADCSQNIAHGTELFIVEGDSAGGSA 478
            +     R   RK RE  R    R        GKL           E+F+VEGDSAGGSA
Sbjct: 347 ALLARNVREEARKAREAARNNKKRGNSDRLLTGKLTPAQNRNKLSNEIFLVEGDSAGGSA 406

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538
           K  R+R  QA+LPLRGK++N   A  + + NN++I  ++ A+G    + +  ED  Y KV
Sbjct: 407 KLGRDRRFQAILPLRGKVINAEKAKMQDLMNNEEINVMINAIGAGVGNAFDIEDANYGKV 466

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI--TQGTKSVYAHDEEH 596
           IIMTDAD DGAHI +LLLTFFY+ M  LIE   +++  PPLF+I  T+  K  YA DE  
Sbjct: 467 IIMTDADTDGAHIQTLLLTFFYRYMRPLIENHRVYIALPPLFKILNTKNKKIDYAWDENE 526

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
            +  L   K     K E+ R+KGLGEM A QL
Sbjct: 527 LKTKLSTLKD----KFELQRYKGLGEMNAEQL 554


>gi|317133209|ref|YP_004092523.1| DNA topoisomerase (ATP-hydrolyzing) [Ethanoligenens harbinense
           YUAN-3]
 gi|315471188|gb|ADU27792.1| DNA topoisomerase (ATP-hydrolyzing) [Ethanoligenens harbinense
           YUAN-3]
          Length = 661

 Score =  452 bits (1162), Expect = e-125,   Method: Composition-based stats.
 Identities = 186/666 (27%), Positives = 299/666 (44%), Gaps = 36/666 (5%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S  Y   SI  L+G E VR RPG+  G    +   H   E++ N++DE   GY N I V+
Sbjct: 6   SQTYGNDSISTLKGAERVRKRPGVIFGSDGLEGCEHSIFEILSNSIDEAREGYGNRIIVT 65

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD---NSTYEISGGLHGV 157
              +  + V D GRG+PV+ +P    +   E++   L+AGGK++     +YE S GL+G+
Sbjct: 66  RFADHSVQVEDFGRGVPVDYNP-AEKRFNWELVYCELYAGGKYNTQAGESYEYSLGLNGL 124

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G       S  + V   R    ++  F RG  +  L+KK+      GT   + PD  +F 
Sbjct: 125 GACATQYASRYMDVISRRDGMEYTLHFERGENVGGLQKKKSKDKTTGTVQRWLPDLDVFT 184

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           D      A    M + +A ++  ++          E     E  EFY+  G++ Y++   
Sbjct: 185 D-IDVPLAFYQDMLKRQAVVNPGLRFLLRD-----ETPDGFETCEFYYENGIEDYVRELA 238

Query: 278 ENRSLISSEIFTGKTE-----KKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHES 332
              +L   +  + + +      K  ++  +  A  +      +  Y N+   + GG  E 
Sbjct: 239 GEDALTPVQSISCERQGRDRADKPEYKVKIAVAFCFHNSANRLEYYHNSSYLEHGGAPEK 298

Query: 333 GLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
            +R A    I    + +    K    I   DL    + + S F     +  QTK  + + 
Sbjct: 299 AVRSAFLSQIDALLKQSNKYLKNESRISFQDLEDCLLLVSSSFSTITSYENQTKKSITNK 358

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR---EVNRKTAIRKL 447
             Q  + + LR   + Y ++NP +A K+ E V+     R    K R   +     ++   
Sbjct: 359 FIQEAMTDFLRHSLEVYFIENPDDANKIAEQVLVNKRSRENAEKTRLNLKKKLSGSLDIA 418

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
               K  DC        EL+IVEGDSA G+ K  R+ + QA++P+RGKILN   A   KI
Sbjct: 419 NRVQKFVDCRTRDVSKRELYIVEGDSALGACKLGRDATFQAIIPVRGKILNCLKADYAKI 478

Query: 508 RNNQQIMDLVQALGCRTRSQYREED---------LRYEKVIIMTDADVDGAHIASLLLTF 558
             N  I D+++ LGC      R            LR+ KV+I TDADVDG  I +L+LT 
Sbjct: 479 FKNDIITDIIKVLGCGVEVNTRANKDMHGFSLEQLRWNKVVICTDADVDGYQIRTLILTM 538

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
            Y+ +  LI + ++++   PL+ I + + + +A+ E  K  IL + K     K  + R K
Sbjct: 539 LYRLVPTLIREGYVYIAESPLYEINEKSMTYFAYTEPEKSTILAKLKG---KKYTVQRSK 595

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           GLGE     + ET M+   R L+RV      + ++ T +  + L+G    ER ++I E  
Sbjct: 596 GLGENEPDMMWETTMNPETRRLIRV----LPDDVEKTVEVFDMLLGNNLAERKQYIAEHG 651

Query: 679 SFIDDV 684
               D+
Sbjct: 652 EEYIDL 657


>gi|84514650|ref|ZP_01002014.1| DNA gyrase subunit B [Loktanella vestfoldensis SKA53]
 gi|84511701|gb|EAQ08154.1| DNA gyrase subunit B [Loktanella vestfoldensis SKA53]
          Length = 774

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 215/550 (39%), Positives = 322/550 (58%), Gaps = 15/550 (2%)

Query: 64  MYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122
           MYIG TD+   LHH+  EV+DN +DE +AG+A+ + V ++ +  +TV DNGRGIPV  H 
Sbjct: 1   MYIGDTDDGSGLHHMVYEVVDNGIDEALAGHADHVYVRINADSSVTVGDNGRGIPVGIH- 59

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
           +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALSD L + + R+      
Sbjct: 60  EGEGVSAAEVIMTQLHAGGKFDSNSYKVSGGLHGVGVSVVNALSDFLELRIWREGKEHYA 119

Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
           +F  G  +  L        ++GT +TF      F ++  FD   L K  +  A+L+  V+
Sbjct: 120 RFEGGFTVESLRVVGDANGRKGTEVTFLAALTTFSNR-DFDFHILEKRLRELAFLNSGVR 178

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
                 +        P + E ++ GG++ +++    +++ +         E+       V
Sbjct: 179 IILEDLR-----PAEPLRNELFYEGGVREFVKYLDRSKTPLMETPIYVTGERDDI---GV 230

Query: 303 EWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359
           E A+ W +   E+   + N I   +GGTH +G R ALTR I KYA  T    K  I++  
Sbjct: 231 EVAMWWNDSYNEMVLPFTNNIPQRDGGTHLAGFRGALTRAIIKYATETGITKKEKIALTG 290

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD       +LSV + +P+F+ QTK KLVS + +  VEN + +  + +  +NP  A  ++
Sbjct: 291 DDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENLMGEKLNEWFEENPATAKSII 350

Query: 420 EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
             ++E +  R   RK RE+ RK+A+       KL DCS+     TE+F+VEGDSAGGSA+
Sbjct: 351 SKIVEAAAAREAARKAREIRRKSAMDVNFNASKLKDCSEKDPSKTEVFLVEGDSAGGSAQ 410

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
             R+R  QA+LPL+GKILNV  A  +++  +Q+I +LV ALG    R +++ + LRY KV
Sbjct: 411 TGRDRGTQAILPLKGKILNVERARFDRMLGSQEIGNLVMALGTGIGRDEFKIDKLRYHKV 470

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQ 598
           IIMTDADVDGAHI +LLLTFF+++M +LIE  HL++  PPL+++T+G   VY  D+    
Sbjct: 471 IIMTDADVDGAHIRTLLLTFFFRQMPELIEGGHLYIAQPPLYKVTRGRSEVYLKDQAAMD 530

Query: 599 KILEEFKKHG 608
           + L E    G
Sbjct: 531 EYLIEQGIDG 540



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L    + G+  + + R+KGLGEM   QL ET +D + RTLL+V++      + +  D 
Sbjct: 691 DLLRAILEEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVKVED----VAEADDL 746

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R +FIQ  A  ++++ 
Sbjct: 747 FTKLMGDVVEPRREFIQTNALNVENLD 773


>gi|115381170|gb|ABI96234.1| DNA topoisomerase IV subunit B [Mesoplasma grammopterae]
 gi|115381172|gb|ABI96235.1| DNA topoisomerase IV subunit B [Mesoplasma grammopterae]
          Length = 552

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 213/569 (37%), Positives = 309/569 (54%), Gaps = 24/569 (4%)

Query: 67  GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           G TD + LHHL  E++DN++DE +AGY   I V+L+ NG +TV DNGRG+P+  H     
Sbjct: 1   GSTDVRGLHHLVWEIVDNSIDEALAGYCTEINVTLEKNGSVTVADNGRGVPIGMH--STG 58

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           + T E+I + LHAGGKF  S Y+ SGGLHGVG SVVNALS + +VT+ R   +   +F+ 
Sbjct: 59  RPTPEVIFSVLHAGGKFGGSGYKTSGGLHGVGSSVVNALSKKFNVTIYRDKKVNEIEFTN 118

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  L+    +    NK GT + F PD  IF     F+   + +  +  A L+  +K   S
Sbjct: 119 GGKLNLPLTEVGTTNKTGTVVNFLPDDSIFNTT-KFNFTTISERLKESALLNSGLKITIS 177

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
                       +  E+ F  GL  +++      + I+  +      K+      +++  
Sbjct: 178 DK-------VNDKFVEYQFENGLVEFVKELASEFTHITDPVVITGESKRIASEICIQYTE 230

Query: 307 AWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMI 364
              + N  I  + N + T +GGTH +G +  L R I  YA+  +    +   + S+DL  
Sbjct: 231 ---DFNETILGFANNVKTGDGGTHITGFKTGLVRAINDYAKNNKILKDKDPRLDSNDLRE 287

Query: 365 SAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
             V I++V I E   E+ GQTK KL + DA+  VE    D  + +L++N + ATK++E  
Sbjct: 288 GLVAIVTVKIPEDLIEYEGQTKGKLGTPDAKTAVEQVTYDFMNFWLIENKVPATKIIEKA 347

Query: 423 IERSEERLRRRKQREVNRKTAIRKLRLPG--KLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
           +     R   RK R+  R +  +K       KL           EL++VEGDSAGGSAK 
Sbjct: 348 MLARRAREEARKARQAIRDSKGKKTTRAMLGKLTPAQGRKKEINELYLVEGDSAGGSAKS 407

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            R+R+ QA+LPLRGK++N   A   ++  N++I  ++ A+G      +   D+ Y KVII
Sbjct: 408 GRDRTFQAILPLRGKVINSEKAKLTELMKNEEIQTIITAIGAGIGQDFDVSDINYGKVII 467

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQK 599
           MTDAD DGAHI +LLLTFFY+ M DLI  KH+F+  PPL+++T    K +Y  DE+    
Sbjct: 468 MTDADTDGAHIQTLLLTFFYRYMKDLIINKHVFIALPPLYKLTFADRKFIYLWDEQE--- 524

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQL 628
            L +F K    K EI R+KGLGEM A QL
Sbjct: 525 -LADFAKTATKKYEIQRYKGLGEMNADQL 552


>gi|98991102|gb|ABF60569.1| DNA gyrase subunit B [Spiroplasma phoeniceum]
 gi|98991104|gb|ABF60570.1| DNA gyrase subunit B [Spiroplasma phoeniceum]
          Length = 557

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 223/562 (39%), Positives = 326/562 (58%), Gaps = 14/562 (2%)

Query: 72  KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLE 131
           + LHHL  E++DN++DEV+A +AN I++ ++ +  +TVVDNGRGIP+E HPK    STLE
Sbjct: 5   RGLHHLVWEIVDNSIDEVLANFANKIKIIINKDESITVVDNGRGIPIEIHPK-TKVSTLE 63

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
            + T LHAGGKFD++TY+ISGGLHGVG SVVNALS  L V V + N  +  +F  G  + 
Sbjct: 64  TVFTILHAGGKFDSNTYKISGGLHGVGASVVNALSKYLKVKVRKNNKKYVMEFHNGGQIL 123

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
              K+    ++ GT +TF PD KIF +   F  + +    +  A+L+  ++      +E 
Sbjct: 124 TPIKEVGSTSETGTTVTFLPDEKIFKEITIFSFSTIQNRIKQLAFLNKGLEISLVDLRED 183

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
            E+    +   + F  G+K Y+    +      +++F  +  +       VE+ + + + 
Sbjct: 184 DEE----KMVVYQFNNGIKDYVLELNKTIGTPLNDVFYVEGIENNI---VVEFGLQYNDN 236

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR---AISIISDDLMISAV 367
               I S+CN I T EGGTHE G+++A+ R I  Y +               DD+     
Sbjct: 237 YSENIFSFCNNINTHEGGTHEEGIKLAIVREINNYFKNINKNNKGNEDKFTWDDIKEGMT 296

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            I+S+   +P++ GQTK KL + + ++ V N +      YL++NP ++ K++E +    +
Sbjct: 297 TIISIRHPDPQYEGQTKKKLGNSEVKKIVSNIVGKGLSSYLLENPEDSKKIIEKISLSLK 356

Query: 428 ERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R+  +  +E   RKT +    LPGKLADC    +   EL+IVEGDSAGGSAK  RNR  
Sbjct: 357 ARIAAQSAKETTRRKTVMDSFSLPGKLADCETKDSKIAELYIVEGDSAGGSAKSGRNRKF 416

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADV 546
           QA+LPLRGKILNV  A   KI  N +I  ++ +LG   +  + ++ LRY+KVIIMTDADV
Sbjct: 417 QAILPLRGKILNVEKAKQIKIFENNEINSIITSLGAGIKDNFNDKKLRYQKVIIMTDADV 476

Query: 547 DGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKK 606
           DGAHI  LLLTFFY+ M DLIE  ++++  PPL++I  G +  YA+ +   +   EE  K
Sbjct: 477 DGAHIRILLLTFFYRYMKDLIENGNIYIAQPPLYKIQNGNQIEYAYSDNELELYKEELLK 536

Query: 607 HGKGKIEISRFKGLGEMLASQL 628
             K    I R+KGLGEM   QL
Sbjct: 537 QNK-NYTIQRYKGLGEMNPEQL 557


>gi|24940620|gb|AAN65247.1|AF329398_37 clorobiocin-resistant gyrase B [Streptomyces roseochromogenes
           subsp. oscitans]
          Length = 572

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 212/572 (37%), Positives = 322/572 (56%), Gaps = 17/572 (2%)

Query: 22  KLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEV 81
             + + + P S    +  A+ +YDA++I +L+GL+ VR RPGMYIG T E+ LHHL  E+
Sbjct: 5   DTRTATDTPGSQQPGHVGAA-SYDANAITVLDGLDAVRKRPGMYIGSTGERGLHHLVQEL 63

Query: 82  IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141
           +DN++DE +AG A+ I+V++  +G + VVDNGRGIPV  HP    +  +E++LT LHAGG
Sbjct: 64  VDNSVDEALAGVADRIDVTILADGGVRVVDNGRGIPVGTHP-VEKRPAVEVVLTVLHAGG 122

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KF    Y +SGGLHGVG+SVVNALS  L   +      ++Q +  G P +PL + E    
Sbjct: 123 KFGGGGYAVSGGLHGVGLSVVNALSTRLSAEIWTDGYRWTQDYRDGAPTAPLARHEATSR 182

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------EIA 252
             GT +TF  D  IF     +    L +  Q  A+L+  +    + ++         + A
Sbjct: 183 -TGTSLTFWADGDIFET-TEYSFETLARRFQEMAFLNRGLTLTLTDERPSARATAAADEA 240

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
           +     +   + + GG+  ++      +   +         +      + E A+ W  + 
Sbjct: 241 DSDPAAKTVSYRYDGGITDFVAYLNSRKGEPAHPSVITIAAEDTERLLSAEVALQWNGQY 300

Query: 313 PE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGI 369
            + + SY N I T EGGTHE G R ALT  + +YA   +   ++  ++  +D+      I
Sbjct: 301 TDSVYSYANGIHTHEGGTHEEGFRTALTTVVNRYAREKKLLREKDANLSGEDVREGLTAI 360

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           +SV + EP+F GQTKTKL + +A+  V+  + +    +  +NP EA  ++   I+ +  R
Sbjct: 361 ISVKLGEPQFEGQTKTKLGNTEARTFVQKIVHEHLTDWFDRNPNEAADIVRKAIQAATAR 420

Query: 430 LRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
           +  RK R++ R+   +    LPGKL+DC  N    +E+F+VEGDSAGGSAK  RN   QA
Sbjct: 421 VAARKARDLTRRKGLLETAALPGKLSDCQSNDPAMSEIFVVEGDSAGGSAKSGRNPQYQA 480

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           +LP+RGKILNV  A  +KI +NQ+I  L+ A G      +    LRY K+I+M DADVDG
Sbjct: 481 ILPIRGKILNVEKARIDKILHNQEIQALISAFGTGVHEDFDIAKLRYHKIILMADADVDG 540

Query: 549 AHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
            HI +LLLTF ++ M  L+E+ H++L  PPL+
Sbjct: 541 QHINTLLLTFLFRFMRPLVEEGHVYLSRPPLY 572


>gi|295102724|emb|CBL00269.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Faecalibacterium prausnitzii L2-6]
          Length = 663

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 178/666 (26%), Positives = 304/666 (45%), Gaps = 31/666 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y   SI  L+G + VR RP +  G    +   H   E++ N++DE   G+ + I V+ 
Sbjct: 5   QEYGNESITSLKGADRVRKRPAVIFGSDGVEGCAHSIFEIVSNSIDEARDGHGDTINVTR 64

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF--DNSTYEISGGLHGVGI 159
             +G + V D GRG+PV+ + K   +   E++   ++AGGK+      YE S GL+G+G+
Sbjct: 65  CKDGSVIVEDFGRGMPVDWN-KGEERYNWELLFCEMYAGGKYGEGEDNYEFSLGLNGLGL 123

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
                 S  +   + R    +   F +G  +  L K+     + G+ I ++PD ++F D 
Sbjct: 124 CATQYASAWMTADIYRDGFHYHLDFQKGENVGGLHKEPYKGRRTGSIIHWKPDDEVFTD- 182

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
                +    + + +A ++  +   ++ +KE     G P KE + +  G+  Y+      
Sbjct: 183 IDVPGSYYKDVLRRQAVVNAGLTLNFTDEKEKDPATGKPWKESWCYEHGIADYVAETAGE 242

Query: 280 RSLISSEIFTGKT-----EKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGL 334
            SL        +      E +  ++  +  A  +  +   +  Y N+   + GG+ E  +
Sbjct: 243 DSLTPVFSCESEATGRDREDQPDYKVKMSAAFCFSNKVQLLEYYHNSSWLEHGGSPEHAV 302

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R A    I KY +      K   +I   D+    V + S F     +  QTK  + +   
Sbjct: 303 RTAFVYQINKYLKDKNLYKKGESAISFQDVQDCLVYVSSSFSTRTSYENQTKKAITNKFV 362

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK---TAIRKLRL 449
            + + + L+   + Y ++ P EA K+ + V+   + R    K R+  +K   T I     
Sbjct: 363 SQAMTDFLKHYLEVYFLEKPDEAQKICQQVLVNKQSREHAEKTRQSIKKTLSTQIDLANR 422

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
             K  DC    A   EL+IVEGDSA G+ K +R+   QA++P+RGKILN   A   +I  
Sbjct: 423 VQKFVDCRTKDASRRELYIVEGDSAMGAVKTSRDSEYQAIMPIRGKILNCLKADYARIFK 482

Query: 510 NQQIMDLVQALGCRTRSQYREED---------LRYEKVIIMTDADVDGAHIASLLLTFFY 560
           +  I+DL++ +GC      +            LR+ K++I TDADVDG  I +L+LT  Y
Sbjct: 483 SDVIVDLIKVMGCGVELGGKHNKELATFNLDNLRFNKIVICTDADVDGYQIRTLVLTMLY 542

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           +    LI + ++++   PL+ IT   ++ +A+ E  K   LEE    G  K  I R KGL
Sbjct: 543 RLTPTLINEGYVYIAESPLYEITTKDRTYFAYTEPEKATFLEEI---GDKKYTIQRSKGL 599

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER-AS 679
           GE     +  T M+   R L++V        ++ T    + L+G     R + I +  A 
Sbjct: 600 GENDPEMMWLTTMNPESRRLIKVM----PTDVERTAQVFDILLGDNLAGRKEHIAQHGAE 655

Query: 680 FIDDVG 685
           ++DD+ 
Sbjct: 656 YLDDLD 661


>gi|70704703|gb|AAZ06859.1| DNA gyrase subunit B [Acholeplasma morum]
 gi|70704732|gb|AAZ06860.1| DNA gyrase subunit B [Acholeplasma morum]
          Length = 535

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 211/549 (38%), Positives = 320/549 (58%), Gaps = 17/549 (3%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
            E+ LHHL  E++DN++DE + GYA+ I + +  +  + V D+GRGIPV+ H K   KS 
Sbjct: 1   GERGLHHLVWEIVDNSIDESMVGYASEITLEILPDNIIKVTDDGRGIPVDKHAK-TGKSA 59

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
           +E ILT LHAGGKFD  +Y++SGGLHGVG SVVNALS    VT++R   ++ Q++SRGIP
Sbjct: 60  VETILTVLHAGGKFDGKSYKVSGGLHGVGASVVNALSSWFRVTISRNGLLYQQEYSRGIP 119

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
              L++  K     GT I F+ D +IF +   FD   L    Q  A+L+  +K   +  +
Sbjct: 120 QYELKEIGKSS-HTGTTIEFKADSEIFTEAQAFDFETLRNRIQELAFLNRHIKISITDSR 178

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
                   P    + + GG++ Y++     +S+I+ +I     E       TVE A+ + 
Sbjct: 179 -----GKEPVSFTYQYEGGIEEYVKFLNHGKSVINPQIVYTFKEVDNI---TVEIALQYN 230

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT-QNKRAISIISDDLMISAV 367
           +     I S+ N I T EGG HE G ++AL+R +  YA+     K+  + I +D      
Sbjct: 231 DSYATNIYSFTNNIHTHEGGMHEDGFKLALSRVLGNYAKDNSLLKKDEAFIGEDTREGLT 290

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            I+S+    P+F GQTKTKL + + ++ V  A  +  + YL++NP  A  +++ VI  S 
Sbjct: 291 AIVSIKHPNPQFEGQTKTKLGNPEVRQIVSQAAGEGLERYLLENPAAAKSIIDKVILASR 350

Query: 428 ERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R+  RK +E  R+ + +  L    KLADC       +E++IVEGDSAGGSAKQ R+ + 
Sbjct: 351 ARIAARKAKEATRRKSPLDALGFASKLADCRNKKPEESEIYIVEGDSAGGSAKQGRDSAF 410

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADV 546
           QA+LPLRGK+LNV  A  +KI +N++I+ ++QA G      +     RY K++IMTDADV
Sbjct: 411 QAILPLRGKVLNVEKARLDKILSNKEILSMIQAFGTGIGEDFDASKARYHKIVIMTDADV 470

Query: 547 DGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKK 606
           DGAHI +L+LTF Y+ M  LI+  ++++  PPL+++  G +  Y +DEE  + +LE+   
Sbjct: 471 DGAHIRTLMLTFLYRYMKPLIDLGYVYVAQPPLYKVQSGKRVEYIYDEERLRAVLEQMG- 529

Query: 607 HGKGKIEIS 615
              G+ +I 
Sbjct: 530 ---GRPQIQ 535


>gi|115381174|gb|ABI96236.1| DNA topoisomerase IV subunit B [Mesoplasma entomophilum]
          Length = 552

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 212/569 (37%), Positives = 309/569 (54%), Gaps = 24/569 (4%)

Query: 67  GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           G TD + LHHL  E++DN++DE +AGY   I V+L+ NG +TV DNGRG+P+  H     
Sbjct: 1   GSTDVRGLHHLVWEIVDNSIDEALAGYCTEINVTLEKNGSVTVADNGRGVPIGMH--STG 58

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           + T E+I + LHAGGKF  S Y+ SGGLHGVG SVVNALS + +VT+ R   +   +F+ 
Sbjct: 59  RPTPEVIFSVLHAGGKFGGSGYKTSGGLHGVGSSVVNALSKKFNVTIYRDKKVNEIEFTN 118

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  L+    +    NK GT + F PD  IF     F+   + +  +  A L+  +K   S
Sbjct: 119 GGKLNIPLTEVGTTNKTGTVVNFLPDDSIFNTT-KFNFTTISERLKESALLNSGLKITIS 177

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
                       +  E+ F  GL  +++      + I+  +      K+      +++  
Sbjct: 178 DK-------VNDKFVEYQFENGLVEFVKELSSEFTHITDPVVITGESKRIASEICIQYTE 230

Query: 307 AWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMI 364
              + N  I  + N + T +GGTH +G +  L R I  YA+  +    +   + S+DL  
Sbjct: 231 ---DFNETILGFANNVKTGDGGTHITGFKTGLVRAINDYAKNNKILKDKDPRLDSNDLRE 287

Query: 365 SAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
             V I++V I E   E+ GQTK KL + DA+  VE    D  + +L++N + ATK++E  
Sbjct: 288 GLVAIVTVKIPEDLIEYEGQTKGKLGTPDAKTAVEQVTYDFMNFWLIENKVPATKIIEKA 347

Query: 423 IERSEERLRRRKQREVNRKTAIRKLRLPG--KLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
           +     R   RK R+  R +  +K       KL           EL++VEGDSAGGSAK 
Sbjct: 348 MLARRAREEARKARQAIRDSKGKKTTRAMLGKLTPAQGRKKEINELYLVEGDSAGGSAKS 407

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            R+R+ QA+LPLRGK++N   A   ++  N++I  ++ A+G      +   D+ Y KVII
Sbjct: 408 GRDRTFQAILPLRGKVINSEKAKLTELMKNEEIQTIITAIGAGIGQDFDVSDINYGKVII 467

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQK 599
           MTDAD DGAHI +LLLTFFY+ M DLI  KH+F+  PPL+++T    K +Y  DE+    
Sbjct: 468 MTDADTDGAHIQTLLLTFFYRYMKDLIINKHVFIALPPLYKLTFADRKFIYLWDEQE--- 524

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQL 628
            L ++ K    K EI R+KGLGEM A QL
Sbjct: 525 -LADYAKTATKKYEIQRYKGLGEMNADQL 552


>gi|296271548|ref|YP_003654179.1| DNA gyrase subunit B [Arcobacter nitrofigilis DSM 7299]
 gi|296095723|gb|ADG91673.1| DNA gyrase, B subunit [Arcobacter nitrofigilis DSM 7299]
          Length = 772

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 226/585 (38%), Positives = 333/585 (56%), Gaps = 24/585 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S  Y AS+I++L+GLE VR RPGMYIG T+   LHH+  EV+DN++DE +AGY   I+++
Sbjct: 2   SQEYGASNIKVLKGLEAVRKRPGMYIGDTNTNGLHHMVYEVVDNSIDEAMAGYCKNIKIT 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  + ++ V D+GRGIP   H +    S   ++LT LHAGGKFD  TY++SGGLHGVG+S
Sbjct: 62  MTKDHWIRVEDDGRGIPTAIH-EGEGISAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS E+ +T+ R+  I  Q+FS+GIP +PLE       K GT I F  D  IF    
Sbjct: 121 VVNALSKEVKMTIYREGKIHYQEFSKGIPKAPLEVIGDSPRKTGTTIEFLADDSIFEVNT 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +D A L K  +  AYL+  +      +          + E ++F GG+K +++      
Sbjct: 181 -YDFAVLAKRFREVAYLNSFISITLINE-------ITKKTEVYHFEGGIKQFVEDINTAT 232

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           ++  +  F             V+ A+ + +    +  S+ N I T +GGTHE+G +  LT
Sbjct: 233 AVSDAVAF-----NDNVDGVEVDIAVMYNDTYVEKTLSFVNNIRTIDGGTHEAGFKAGLT 287

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I KY        ++   I  DD+    + I+SV + EP+F GQTK KL S   +   +
Sbjct: 288 RSIVKYLNENAAAREKDTKITGDDVREGLIAIISVKVPEPQFEGQTKGKLGSSYVKPICQ 347

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADC 456
               +  D Y  +NP +A  +++  +  +  R   +K R++  +K A+    LPGKLA+C
Sbjct: 348 RLTSEQLDKYFEENPAQAKAIMDKALMAARGREAAKKARDMTRKKDAMTVGTLPGKLAEC 407

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
                   EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  +  +KI  + +I ++
Sbjct: 408 QSKDPAIRELYLVEGDSAGGSAKQGRDRVYQAILPLKGKILNVEKSRLDKILKSDEIRNM 467

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + ALGC     + EE +RY K+I MTDADVDG+HI +LLLTFF++ +  +IE+ +L++  
Sbjct: 468 ITALGCGIGEDFDEEKIRYHKIIFMTDADVDGSHIQTLLLTFFFRFLRPVIEKGYLYIAQ 527

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
           PPL+R  +G    Y  D+      L E   +G    E     GLG
Sbjct: 528 PPLYRYKKGKNETYLKDDNALSAFLIE---NGLESFEFQ---GLG 566



 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 4/91 (4%)

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
               +IL+E +   K    I R+KGLGEM   QL ET M    R LLRV I+        
Sbjct: 685 RDLVEILDEIETLAKKGAYIQRYKGLGEMNPEQLWETTMTPEARRLLRVTIDDATV---- 740

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
             D+    MG + + R  +I+E A  ++ + 
Sbjct: 741 ASDTFTLFMGDEVEPRRNYIEEHAKDVEHLD 771


>gi|224994121|dbj|BAH28873.1| DNA gyrase subunit B [Psychrobacter piscatorii]
          Length = 743

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 204/542 (37%), Positives = 328/542 (60%), Gaps = 19/542 (3%)

Query: 66  IGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKF 124
           IG TD+   LHH+  EV+DN++DE +AG+ + I++ +  +  ++V+DNGRG+PV+ HP+ 
Sbjct: 1   IGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQIDIIIHEDESVSVMDNGRGVPVDIHPE- 59

Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184
              S  ++I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+   + Q +
Sbjct: 60  EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYHYHQTY 119

Query: 185 SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244
           + G+P + +++ E   ++ GT+I F P   +F     F+   L K  +  ++L+  V+  
Sbjct: 120 TDGVPDADIQQMEAT-DQTGTQIRFYPSSDVFTGTV-FEYDILAKRLRELSFLNSGVRIV 177

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
            + ++       I ++ EF   GGL  ++      +  I+        +  G    +VE 
Sbjct: 178 LTDER-------IDKRHEFEHKGGLLEFVSYINAGKDGINEVFHFTSQQDDGI---SVEV 227

Query: 305 AIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDD 361
           A+ W +    ++  + N I   +GGTH SG R ALTRG+  Y +      K  ++   DD
Sbjct: 228 ALQWTDTYNEKVLCFTNNIPQKDGGTHLSGFRSALTRGLNSYMDRENLFKKEKVAATGDD 287

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
                  I+SV + +P+F+ QTK KLVS + +  VE+A+ D F+ YL++NP     +   
Sbjct: 288 AREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDYLLENPTAGKAIANK 347

Query: 422 VIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
           ++E +  R   RK      RKT +    LPGKLADC +     +EL+IVEGDSAGGSAKQ
Sbjct: 348 IMEAARARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPVLSELYIVEGDSAGGSAKQ 407

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            R+R  QA+LPL+GKILNV  A  +K+ ++ ++ +L+ ALGC     +Y  + +RY K+I
Sbjct: 408 GRSRKTQAILPLKGKILNVERARFDKMLSSAEVGNLITALGCGIGPDEYNPDKVRYHKII 467

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599
           IMTDADVDG+HI +LLLTFF+++  +LIE+ ++++  PPL+++ +G + +Y  D+E  + 
Sbjct: 468 IMTDADVDGSHIRTLLLTFFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDDEALKA 527

Query: 600 IL 601
            L
Sbjct: 528 YL 529


>gi|72388587|gb|AAZ67937.1| DNA gyrase subunit B [Psychrobacter immobilis]
          Length = 747

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 200/535 (37%), Positives = 320/535 (59%), Gaps = 18/535 (3%)

Query: 72  KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLE 131
             LHH+  EV+DN++DE +AG+ + I++ +  +  ++V+DNGRG+PV+ HP+    S  +
Sbjct: 7   SGLHHMVFEVVDNSIDEALAGHCDQIDIIIHEDESVSVMDNGRGVPVDIHPE-EGVSAAQ 65

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           +I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+   + Q ++ G+P +
Sbjct: 66  VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYHYHQTYTDGVPDA 125

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
            +++ E   +K GT+I F P   +F     F+   L K  +  ++L+  V+   + ++  
Sbjct: 126 DIQQMEPT-DKTGTQIRFYPSSDVFTGTI-FEYDILAKRLRELSFLNSGVRIVLTDER-- 181

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
                I ++ EF   GGL  ++      +  I+        +  G    +VE A+ W + 
Sbjct: 182 -----IDKRHEFEHKGGLSEFVSYINAGKDGINEVFHFVSEQDDGI---SVEVALQWTDT 233

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVG 368
              ++  + N I   +GGTH SG R ALTR +  Y +      K  +    DD       
Sbjct: 234 YNEKVFCFTNNIPQRDGGTHLSGFRSALTRCLNTYMDRENLFKKEKVVATGDDAREGLTA 293

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           I+SV + +P+F+ QTK KLVS + +  VE+A+ D F+ YL +NP     +   +I+ +  
Sbjct: 294 IVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDYLQENPSAGKAIAGKIIDAARA 353

Query: 429 RLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
           R   RK      RKT +    LPGKLADC +     +EL+IVEGDSAGGSAKQ R+R  Q
Sbjct: 354 RDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPAFSELYIVEGDSAGGSAKQGRSRKTQ 413

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADV 546
           A+LPL+GKILNV  A  +K+ ++ ++ +L+ ALGC     +Y  + +RY K+IIMTDADV
Sbjct: 414 AILPLKGKILNVERARFDKMLSSAEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTDADV 473

Query: 547 DGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           DG+HI +LLLTFF+++  +LIE+ ++++  PPL+++ +G + +Y  D+E  +  L
Sbjct: 474 DGSHIRTLLLTFFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDDEALKAYL 528


>gi|70704828|gb|AAZ06861.1| DNA gyrase subunit B [Acholeplasma morum]
          Length = 535

 Score =  449 bits (1154), Expect = e-123,   Method: Composition-based stats.
 Identities = 210/549 (38%), Positives = 320/549 (58%), Gaps = 17/549 (3%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
            E+ LHHL  E++DN++DE + GYA+ I + +  +  + V D+GRGIPV+ H K   KS 
Sbjct: 1   GERGLHHLVWEIVDNSIDESMVGYASEITLEILPDNIIKVTDDGRGIPVDKHAK-TGKSA 59

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
           +E ILT LHAGGKFD  +Y++SGGLHGVG SVVNALS    VT++R   ++ Q++SRGIP
Sbjct: 60  VETILTVLHAGGKFDGKSYKVSGGLHGVGASVVNALSSWFRVTISRNGLLYQQEYSRGIP 119

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
              L++  K     GT I F+ D +IF +   FD   L    Q  A+L+  +K   +  +
Sbjct: 120 QYELKEIGKSS-HTGTTIEFKADSEIFTEAQVFDFETLRNRIQELAFLNRHIKISITDSR 178

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
                   P    + + GG++ Y++     +S+I+ +I     E       TVE A+ + 
Sbjct: 179 -----GKEPVSFTYQYEGGIEEYVKFLNHGKSVINPQIVYSFKEVDNI---TVEIALQYN 230

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT-QNKRAISIISDDLMISAV 367
           +     I S+ N I T EGG HE G ++AL+R +  YA+     K+  + I +D      
Sbjct: 231 DSYATNIYSFTNNIHTHEGGMHEDGFKLALSRVLGNYAKDNSLLKKDEAFIGEDTREGLT 290

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            I+S+    P+F GQTKTKL + + ++ V  A  +  + YL++NP  A  +++ VI  S 
Sbjct: 291 AIVSIKHPNPQFEGQTKTKLGNPEVRQIVSQAAGEGLERYLLENPAAAKSIIDKVILASR 350

Query: 428 ERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R+  RK +E  R+ + +  L    KLADC       +E++IVEGDSAGGSAKQ R+ + 
Sbjct: 351 ARIAARKAKEATRRKSPLDALGFASKLADCRNKKPEESEIYIVEGDSAGGSAKQGRDSAF 410

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADV 546
           QA+LPLRGK+LNV  A  ++I +N++I+ ++QA G      +     RY K++IMTDADV
Sbjct: 411 QAILPLRGKVLNVEKARLDRILSNKEILSMIQAFGTGIGEDFDVSKARYHKIVIMTDADV 470

Query: 547 DGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKK 606
           DGAHI +L+LTF Y+ M  LI+  ++++  PPL+++  G +  Y +DEE  + +LE+   
Sbjct: 471 DGAHIRTLMLTFLYRYMKPLIDLGYVYVAQPPLYKVQSGKRVEYIYDEERLRVVLEQMG- 529

Query: 607 HGKGKIEIS 615
              G+ +I 
Sbjct: 530 ---GRPQIQ 535


>gi|157736274|ref|YP_001488957.1| DNA gyrase subunit B [Arcobacter butzleri RM4018]
 gi|315635403|ref|ZP_07890669.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Arcobacter butzleri
           JV22]
 gi|157698128|gb|ABV66288.1| DNA gyrase, subunit B [Arcobacter butzleri RM4018]
 gi|315480161|gb|EFU70828.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Arcobacter butzleri
           JV22]
          Length = 773

 Score =  448 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 232/586 (39%), Positives = 329/586 (56%), Gaps = 24/586 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           +   Y AS+I++L+GLE VR RPGMYIG T+   LHHL  EV+DN++DE +AG+   I+V
Sbjct: 2   SQQEYGASNIKVLKGLEAVRKRPGMYIGDTNINGLHHLVYEVVDNSIDEAMAGFCRNIKV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G+  + D+GRGIP   HP     S   + LT LHAGGKFD  TY++SGGLHGVG+
Sbjct: 62  TLTKDGWARIEDDGRGIPTAIHP-TEGISAATVALTVLHAGGKFDKDTYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS  L +TV R+  I  Q+F  GIP   LE       K GT I F  D  IF   
Sbjct: 121 SVVNALSKHLKMTVYREGKIHYQEFKEGIPQGTLEIIGDSPRKTGTTIEFLVDDSIFEVT 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             ++   L K  +  AYL+  +      +           KE ++F GG+K ++    + 
Sbjct: 181 -KYEFNILKKRFKEVAYLNPIISITLEDE-------AAKLKEVYHFEGGIKQFVADMNKE 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
            +L     F+ + E        V+ A+ + +    +  S+ N I T +GGTHE+G +  L
Sbjct: 233 TALCEVISFSDRVE-----GVEVDIAMMYNDTYIEKTLSFVNNIRTIDGGTHEAGFKAGL 287

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR I KY        ++   I  DD+    + ++SV + EP+F GQTK KL S   +   
Sbjct: 288 TRSISKYLSENAAAREKDTKITGDDVREGLIAVVSVKVPEPQFEGQTKGKLGSSYVRPIA 347

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
           +    D  D Y  +NP  A  ++E  +  +  R   +K RE   +K A+    LPGKLA+
Sbjct: 348 QKLTGDNLDKYFEENPTHAKAIMEKALMAARGREAAKKARELTRKKDAMTVGTLPGKLAE 407

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C        EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  +  +KI  + +I +
Sbjct: 408 CQSKDPAIRELYLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSRLDKILKSDEIRN 467

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ ALGC     + EE +RY K+IIMTDADVDG+HI +LLLTFF++ +  +IE+ +L++ 
Sbjct: 468 MITALGCGIGEDFDEEKIRYHKIIIMTDADVDGSHIQTLLLTFFFRFLRPVIEKGYLYIA 527

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
            PPL+R  +G   +Y  D       L E   +G    E   F+GLG
Sbjct: 528 QPPLYRYKKGKNEIYLKDNNALSAFLIE---NGLESFE---FEGLG 567



 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 4/91 (4%)

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
               +ILEE +   K    I R+KGLGEM   QL ET M  + R LLRV+I       + 
Sbjct: 686 RDLIEILEEIETLAKKGAYIQRYKGLGEMNPEQLWETTMIPDNRRLLRVKIED----AEV 741

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
             D+    MG + + R  +I+E A  ++ + 
Sbjct: 742 ASDTFTLFMGDEVEPRRNYIEEHAKDVEHLD 772


>gi|73916452|gb|AAZ93094.1| topoisomerase IV subunit B [Streptococcus pneumoniae]
          Length = 536

 Score =  448 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 203/542 (37%), Positives = 307/542 (56%), Gaps = 24/542 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS+ L V + R   ++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSNWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V    +  +         E  EF++  G++ ++    E+
Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           + +++      + E  G     VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451
            V+  + D    +L++N   A+ L+   I+  + R   RK R+ +R   K    K  L G
Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNE 474

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534

Query: 572 LF 573
           ++
Sbjct: 535 VY 536


>gi|72388573|gb|AAZ67930.1| DNA gyrase subunit B [Psychrobacter okhotskensis]
          Length = 741

 Score =  448 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 198/536 (36%), Positives = 323/536 (60%), Gaps = 18/536 (3%)

Query: 71  EKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTL 130
              LHH+  EV+DN++DE +AG+ + I++ +  +  ++V+DNGRG+PV+ HP+    S  
Sbjct: 3   SDGLHHMVFEVVDNSIDEALAGHCDQIDIVIHEDESVSVMDNGRGVPVDIHPE-EGVSAA 61

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           ++I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+   + Q ++ G+P 
Sbjct: 62  QVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYHYHQTYTDGVPD 121

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           + +++ E   +K GT+I F P   +F     F+   L K  +  ++L+  V+   + ++ 
Sbjct: 122 ADIQQMEAT-DKTGTQIRFYPSNDVFTGTI-FEYDILAKRLRELSFLNSGVRIVLTDER- 178

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                 I ++ EF   GGL  ++      +  ++        +  G    +VE A+ W +
Sbjct: 179 ------IDKRHEFEHKGGLSEFVSYINAGKDGVNEVFHFDSEQDDGI---SVEVALQWTD 229

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
               ++  + N I   +GGTH SG R ALTR +  Y +      K  ++   DD      
Sbjct: 230 TYNEKVLCFTNNIPQRDGGTHLSGFRSALTRCLNSYMDRENLFKKEKVTATGDDAREGLT 289

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            I+SV + +P+F+ QTK KLVS + +  VE+A+ D F+ +L++NP  +  +   +I+ + 
Sbjct: 290 AIVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDFLLENPTASKAIANKIIDAAR 349

Query: 428 ERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK      RKT +    LPGKLADC +     +EL+IVEGDSAGGSAKQ R+R  
Sbjct: 350 ARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRSRKT 409

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++ ++ +L+ ALGC     +Y  + +RY K+IIMTDAD
Sbjct: 410 QAILPLKGKILNVERARFDKMLSSAEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTDAD 469

Query: 546 VDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           VDG+HI +LLLTFF+++  +LIE+ ++++  PPL+++ +G + +Y  D+E  +  L
Sbjct: 470 VDGSHIRTLLLTFFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDDEALKAYL 525


>gi|254230346|ref|ZP_04923732.1| DNA gyrase, B subunit [Vibrio sp. Ex25]
 gi|151937138|gb|EDN56010.1| DNA gyrase, B subunit [Vibrio sp. Ex25]
          Length = 563

 Score =  448 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 214/526 (40%), Positives = 320/526 (60%), Gaps = 17/526 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+   I V
Sbjct: 2   SENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP E H +  N S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDNSVSVSDDGRGIPTEIHSE-ENVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+++ +T+ R   I +Q +  G P +PL       +K GT+I F P  + F + 
Sbjct: 121 SVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQIRFWPSAETFSN- 178

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V      ++E        + + F + GG++ ++     N
Sbjct: 179 TEFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KHDHFMYEGGIQAFVDHLNTN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  +IF   +E++     +VE A+ W +     I  + N I   +GGTH +G R AL
Sbjct: 233 KTPIIEKIFHFNSERED--GISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAAL 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 291 TRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           E+A+ +    +L++NP EA  +   +I+        R+ +    RK A+    LPGKLAD
Sbjct: 351 ESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF 
Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFL 516


>gi|169260665|gb|ACA52058.1| DNA gyrase B subunit [Shewanella sp. JG353]
          Length = 762

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 205/547 (37%), Positives = 318/547 (58%), Gaps = 17/547 (3%)

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133
           LHH+  EV+DN++DE +AG+   I +++  +G ++V D+GRGIPV  H +    S  E+I
Sbjct: 1   LHHMVFEVVDNSIDEALAGHCTDITITIHVDGSVSVKDDGRGIPVSIHEE-EGVSAAEVI 59

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           +T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L +T+ R   +  Q ++ G+P +P+
Sbjct: 60  MTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLQLTIRRDGKVHEQFYTHGVPDAPI 119

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           ++        GT I F P  + F D   F    L K  +  ++L+  V      +++   
Sbjct: 120 KEIGDATK-TGTEIRFWPSEQTFSDV-EFHFEILAKRVRELSFLNSGVGIRLVDERDN-- 175

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
                + E F + GG+  ++     N++ ++ ++F    E+      TVE A+ W +   
Sbjct: 176 -----KNEFFKYEGGISAFVDYLNRNKTPVNKDVFHFMQERDD--GITVEVAMQWNDGYQ 228

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGIL 370
             I  + N I   +GGTH +G R ALTR +  Y E      K   +   DD       ++
Sbjct: 229 ENIFCFTNNIPQRDGGTHLAGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLTAVI 288

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV + +P+F+ QTK KLVS + +  VE  + +  + YL++NP +A  ++  +++ +  R 
Sbjct: 289 SVKVPDPKFSSQTKDKLVSSEVKAAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARARE 348

Query: 431 RRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK R    RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR NQA+
Sbjct: 349 AARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAI 408

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDG 548
           LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  +  RY  +IIMTDADVDG
Sbjct: 409 LPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDG 468

Query: 549 AHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +HI +LLLTFF+++M +LIE+ ++++  PPLF++ +G +  Y  DE    + L      G
Sbjct: 469 SHIRTLLLTFFFRQMPELIERGYVYIAQPPLFKVKKGKQEQYLKDEAALTQYLTTQALDG 528

Query: 609 KGKIEIS 615
                  
Sbjct: 529 TSIYPSQ 535



 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 4/80 (5%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           + L+      K  + I R+KGLGEM   QL ET MD   R +L+V I+  +         
Sbjct: 686 EALDWTISEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVG----ADQL 741

Query: 659 INKLMGTKADERFKFIQERA 678
              LMG + + R +FI+  A
Sbjct: 742 FTCLMGDQVEPRREFIEANA 761


>gi|94957788|gb|ABF47144.1| DNA topoisomerase IV subunit B [Mesoplasma chauliocola]
          Length = 551

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 211/567 (37%), Positives = 308/567 (54%), Gaps = 24/567 (4%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           TD + LHHL  E++DN++DE +AGY   I V+L+ NG +TV DNGRG+P+  H     + 
Sbjct: 2   TDVRGLHHLVWEIVDNSIDEALAGYCTEINVTLEKNGSVTVADNGRGVPIGMH--STGRP 59

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
           T E+I + LHAGGKF  S Y+ SGGLHGVG SVVNALS + +VT+ R   +   +F+ G 
Sbjct: 60  TPEVIFSVLHAGGKFGGSGYKTSGGLHGVGSSVVNALSKKFNVTIYRDKKVNEIEFTNGG 119

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
            L+    +    NK GT + F PD  IF     F    + +  +  A L+  ++   +  
Sbjct: 120 KLNIPLTEVGTTNKTGTIVNFLPDDSIFNTT-KFSFTTITERLKESALLNSGLRITITDK 178

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
                     +  E+ F  GL  +++      + I+  +      K+      +++    
Sbjct: 179 -------INDKFVEYQFENGLVEFVKELSSEFTQITEPVVITGESKRIASEICIQYTE-- 229

Query: 309 CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISA 366
            + N  I  + N + T +GGTH +G +  L R I  YA+  +    +   + S+DL    
Sbjct: 230 -DFNETILGFANNVKTGDGGTHITGFKTGLVRAINDYAKNNKILKDKDPRLDSNDLREGL 288

Query: 367 VGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           V I++V I E   E+ GQTK KL + DA+  VE    D  + +L++N + ATK++E  + 
Sbjct: 289 VAIVTVKIPEDLIEYEGQTKGKLGTPDAKIAVEQVTYDFMNFWLIENKVPATKIIEKAML 348

Query: 425 RSEERLRRRKQREVNRKTAIRKLRLPG--KLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
             + R   RK R+  R +  +K       KL           EL++VEGDSAGGSAK  R
Sbjct: 349 ARKAREEARKARQAIRDSKGKKTTRAMLGKLTPAQGRKKEINELYLVEGDSAGGSAKSGR 408

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           +R+ QA+LPLRGK++N   A   ++  N++I  ++ A+G      +   D+ Y KVIIMT
Sbjct: 409 DRTFQAILPLRGKVINSEKAKLAELMKNEEIQTIITAIGAGIGQDFDVNDINYGKVIIMT 468

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKIL 601
           DAD DGAHI +LLLTFFY+ M DLI  KH+F+  PPL+++T    K +Y  DEE     L
Sbjct: 469 DADTDGAHIQTLLLTFFYRYMKDLIINKHVFIALPPLYKLTFADRKFIYLWDEEE----L 524

Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQL 628
            +F K    K EI R+KGLGEM A QL
Sbjct: 525 ADFAKTATKKYEIQRYKGLGEMNADQL 551


>gi|296178610|dbj|BAJ07688.1| DNA gyrase B [Kosmotoga arenicorallina]
          Length = 538

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 217/554 (39%), Positives = 319/554 (57%), Gaps = 20/554 (3%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T +  LHHL  EV+DN++DEV+AG+ + IEV++  +G + V+DNGRGIPV+ HP     S
Sbjct: 1   TGKAGLHHLVYEVVDNSIDEVVAGFCDQIEVTIFEDGTVRVMDNGRGIPVDVHP-DTGTS 59

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
            LE+++TTLHAGGKF   +Y+ISGGLHGVG+SVVNALS+ L V V R+  I+ Q++ RGI
Sbjct: 60  ALEVVMTTLHAGGKFSKDSYKISGGLHGVGVSVVNALSEWLEVKVHREGEIYRQRYERGI 119

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
           P++P+E   K  +KRGT   F+PD  +F     FD   L    +  A+L+  V+  +   
Sbjct: 120 PVTPVEIIGKT-DKRGTETWFKPDKLVFTTT-DFDFDILESRLRELAFLNPSVRIIFEDK 177

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +   ++        F+F GG+  +++     ++ I+ E +  +          V+ A+ +
Sbjct: 178 RINEKRA-------FHFEGGISEFVKFMNRKKTAINKEPYYIEGTFNDI---KVQLALQY 227

Query: 309 CEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
                E   ++ N I T EGGTH +G +  LT+ I  YA+      ++  ++  +D+   
Sbjct: 228 TTSFEEHILTFVNNIKTVEGGTHLTGFKTILTKLINDYAKKFNIIKEKDPNLQGEDVREG 287

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              +LS+FI+EP+F GQTK KL + +    V   LRD        N  E   ++   ++ 
Sbjct: 288 LTAVLSIFIKEPQFEGQTKAKLGNEEGYEAVIKVLRDKLPEVFEYNQKEVKAIISKAVDA 347

Query: 426 SEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           ++ RL  +K    V RK A+    LPGKLADC       TELFIVEGDSAGGSAKQAR+R
Sbjct: 348 AKARLAAKKAREMVRRKNALENTTLPGKLADCISQDLDNTELFIVEGDSAGGSAKQARDR 407

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA+LPLRGKILNV  A  EK+  N+QI +++ A+G         E LRY K+IIMTDA
Sbjct: 408 EFQAILPLRGKILNVEKASFEKLLKNEQINNIIVAVGTGIGDDLNLEKLRYGKIIIMTDA 467

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           DVDGAHI +L+LT  Y+ M  LI    +++   PL+++    K  Y   +E  +   +E 
Sbjct: 468 DVDGAHIRTLILTLLYRYMTPLISTGRVYIAQAPLYKVELNRKKYYFFSDEELEAFSKE- 526

Query: 605 KKHGKGKIEISRFK 618
             +   ++ I R+K
Sbjct: 527 --NAGKRLNIQRYK 538


>gi|72388583|gb|AAZ67935.1| DNA gyrase subunit B [Psychrobacter luti]
          Length = 746

 Score =  446 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 200/538 (37%), Positives = 322/538 (59%), Gaps = 18/538 (3%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
            +   LHH+  EV+DN++DE +AG+ + I++ +  +  ++V+DNGRG+PV+ HP+    S
Sbjct: 4   IERSGLHHMVFEVVDNSIDEALAGHCDQIDIIIHEDESVSVMDNGRGVPVDIHPE-EGVS 62

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
             ++I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+   + Q ++ G+
Sbjct: 63  AAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYHYHQTYNDGV 122

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
           P   +++ E   ++ GT+I F P   +F     F+   L K  +  ++L+  V+   + +
Sbjct: 123 PDGDIQQMEAT-DQTGTQIRFYPSNDVFTGTI-FEYDILAKRLRELSFLNSGVRIVLTDE 180

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +       I ++ EF   GGL  ++      +  I+        +  G    +VE A+ W
Sbjct: 181 R-------IDKRHEFEHKGGLSEFVSYINAGKDGINDVFHFVSEQDDGI---SVEVALQW 230

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
            +    ++  + N I   +GGTH SG R ALTRG+  Y +      K  +    DD    
Sbjct: 231 TDTYNEKVLCFTNNIPQRDGGTHLSGFRSALTRGLNSYMDRENLFKKEKVVATGDDAREG 290

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              I+SV + +P+F+ QTK KLVS + +  VE+A+ D F+ YL++NP     +   +I+ 
Sbjct: 291 LTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDYLLENPSTGKAIASKIIDA 350

Query: 426 SEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           +  R   RK      RKT +    LPGKLADC +     +EL+IVEGDSAGGSAKQ R+R
Sbjct: 351 ARARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRSR 410

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTD 543
             QA+LPL+GKILNV  A  +K+ ++ ++ +L+ ALGC     +Y  + +RY K+IIMTD
Sbjct: 411 KTQAILPLKGKILNVERARFDKMLSSAEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTD 470

Query: 544 ADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ADVDG+HI +LLLTFF+++  +LIE+ ++++  PPL+++ +G + +Y  D+E  +  L
Sbjct: 471 ADVDGSHIRTLLLTFFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDDEALKAYL 528


>gi|309784252|ref|ZP_07678891.1| DNA gyrase, B subunit [Shigella dysenteriae 1617]
 gi|308927759|gb|EFP73227.1| DNA gyrase, B subunit [Shigella dysenteriae 1617]
          Length = 762

 Score =  446 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 203/532 (38%), Positives = 314/532 (59%), Gaps = 17/532 (3%)

Query: 82  IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141
           +DNA+DE +AG+   I V++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGG
Sbjct: 2   VDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGG 60

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL    +   
Sbjct: 61  KFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK 120

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             GT + F P  + F +   F+   L K  +  ++L+  V       ++  E       +
Sbjct: 121 -TGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------D 172

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N
Sbjct: 173 HFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTN 229

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+
Sbjct: 230 NIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPK 289

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-E 437
           F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R  
Sbjct: 290 FSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREM 349

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
             RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKIL
Sbjct: 350 TRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKIL 409

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556
           NV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLL
Sbjct: 410 NVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLL 469

Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           TFFY++M +++E+ H+++  PPL+++ +G +  Y  D+E   +        G
Sbjct: 470 TFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 521



 Score =  136 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 677 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 732

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 733 QLFTTLMGDAVEPRRAFIEENALKAANID 761


>gi|115381180|gb|ABI96239.1| DNA gyrase subunit B [Spiroplasma gladiatoris]
          Length = 551

 Score =  445 bits (1145), Expect = e-123,   Method: Composition-based stats.
 Identities = 221/564 (39%), Positives = 323/564 (57%), Gaps = 15/564 (2%)

Query: 67  GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           G T++  LHHL  E++DN++DE +AG+ + + + +     + + DNGRGIPV+ HPK   
Sbjct: 1   GNTNKNGLHHLIWEILDNSVDEALAGFCDEVTIVITEENEIIIKDNGRGIPVDIHPK-TK 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           K+TLE I T LHAGGKFD S Y+ISGGLHGVG SVVNALS  +   V R   ++ Q FS 
Sbjct: 60  KTTLETIFTVLHAGGKFDESAYKISGGLHGVGASVVNALSLYVEAIVMRDGKMYKQYFSE 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G   +   ++    ++ GT + F+PDP+IF +   F+   +    +  A+L+  +K    
Sbjct: 120 GGTKATPLEELGASDQNGTIVKFKPDPEIFKETTTFEFKIIQTKIKQLAFLNKGLKINLI 179

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             K         +   + F  G+K Y++     +  I SEIF      +  ++  VE AI
Sbjct: 180 DQK-------YDKHLSYCFEDGIKDYIKEINSGKEKIGSEIFYV---NELFNKIDVEVAI 229

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
            + +     I S+CN I T EGGTHE G ++++ + I  Y    +N +    I DD+   
Sbjct: 230 QYNDTYDENIYSFCNNIFTSEGGTHEEGFKISILKAINYYVGNQKNYKGKKFIFDDIKEG 289

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              ++S+   +P + GQTK KL +LDA+  V N L + F  +L++NP +A  ++E +I  
Sbjct: 290 LCAVISIKHVDPLYEGQTKAKLSNLDAKEAVSNILFENFKEFLLKNPNDAKSIIEKIIIS 349

Query: 426 SEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
            + R   ++ RE   RK+AI    LPGKLADC    A  +EL++VEGDSAGGSAK  RNR
Sbjct: 350 EKARKAAQRAREDTRRKSAIDNFSLPGKLADCESKDAETSELYLVEGDSAGGSAKIGRNR 409

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA+L LRGK+LNV      K   N +I  ++ A+G   +       LRY+K++IMTDA
Sbjct: 410 KFQAILSLRGKVLNVEKVKQAKAFENNEIQSIIAAIGTGVKKDLNLNKLRYKKIVIMTDA 469

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           DVDGAHI  LLLTFFY+ M +LI   ++++  PPL++I  G    YA+ +   + +  + 
Sbjct: 470 DVDGAHIRVLLLTFFYRYMKELIVNGNIYIAQPPLYKIESGKNVDYAYSDLQLEVLKND- 528

Query: 605 KKHGKGKIEISRFKGLGEMLASQL 628
            K+   K  I R+KGLGEM A QL
Sbjct: 529 -KYKDLKYVIQRYKGLGEMDAIQL 551


>gi|296504102|ref|YP_003665802.1| DNA topoisomerase IV subunit B [Bacillus thuringiensis BMB171]
 gi|296325154|gb|ADH08082.1| DNA topoisomerase IV subunit B [Bacillus thuringiensis BMB171]
          Length = 575

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 205/578 (35%), Positives = 307/578 (53%), Gaps = 36/578 (6%)

Query: 116 IPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR 175
           +P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVVNALS+ L VT+ R
Sbjct: 1   MPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSEWLVVTIKR 58

Query: 176 QNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
              I+ Q+F  G +P + LEK  K +   GT + F+PD  IF     ++   L +  +  
Sbjct: 59  DGNIYEQRFENGGVPATTLEKIGKTKE-SGTTMHFKPDTTIFSTTN-YNYETLCERLRES 116

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           A+L   +K     ++   E       + F++  G++ ++    E +  I   +     E+
Sbjct: 117 AFLLKGMKISIKDERNDLE-------DIFHYETGIEAFVSYLNEEKDSIHPVV-YFTGEQ 168

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQN 351
            G      E A  + +     I S+ N + T +GGTHE+G + A+TR   +YA       
Sbjct: 169 NGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRVFNEYARKVALLK 225

Query: 352 KRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
           ++  ++   D+      I+SV + E   +F GQTK KL + +A+ +++  + +   ++L 
Sbjct: 226 EKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSIDAIVSEHLAYFLE 285

Query: 410 QNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKLADCSQNIAHGTEL 466
           +NP  AT L+   I+ ++ R   RK RE  R    +K     L GKL           EL
Sbjct: 286 ENPDVATLLVRKAIKAAQAREAARKAREEARSGKKKKKSEGTLSGKLTPAQSRNPQKNEL 345

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS 526
           ++VEGDSAGGSAKQ R+R  QAVLPLRGK++N   A    I  N++I  ++ A+G    +
Sbjct: 346 YLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIYAIGGGVGN 405

Query: 527 QYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT 586
           ++  ED+ Y+KV+IMTDAD DGAHI  LLLTFFY+ M  LIE   +F+  PPL+++++G 
Sbjct: 406 EFDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVFIALPPLYKVSKGK 465

Query: 587 KS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLR 642
                  YA  +E    + ++  K       + R+KGLGEM A QL ET M+   RTL+R
Sbjct: 466 GKSEVIEYAWSDEELDGVTKKVGK----GYMLQRYKGLGEMNADQLWETTMNPETRTLIR 521

Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           V+I+         +  +  LMG K + R K+I+    F
Sbjct: 522 VKIDD----AARAERRVTTLMGDKVEPRRKWIERNVQF 555


>gi|94983849|gb|ABF50629.1| DNA topoisomerase IV subunit B [Spiroplasma taiwanense]
          Length = 556

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 200/572 (34%), Positives = 306/572 (53%), Gaps = 26/572 (4%)

Query: 67  GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           G TD + LHHL  E++DN++DE +AG    I VS++ +G +TV DNGRG+P+ ++ K  N
Sbjct: 1   GSTDSRGLHHLVWEIVDNSIDEALAGICTEINVSIEKDGSITVKDNGRGVPIGSY-KGTN 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           +ST EII + LHAGGKF    Y+ SGGLHGVG SVVNALS +  V + R   I   KF+ 
Sbjct: 60  QSTPEIIFSVLHAGGKFGGDGYKTSGGLHGVGSSVVNALSSKFKVIIHRDGLISQIKFAN 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  L    K+     + GT + F PD +       F  + + +  +  A L+  +K    
Sbjct: 120 GGKLVQPLKQTGNSKQTGTTVNFLPD-ETMFSTVKFSFSTISERLKESALLNSGLKITLR 178

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
            ++         +  E+ +  GL  +++    ++  I S+    K  ++G     VE A+
Sbjct: 179 DNRS-------DKYVEYIYENGLTEFVKELKGDQKEIISQPILIKGNEQGI---DVEIAM 228

Query: 307 AWC-EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLM 363
            +  + +  +  + N + T +GGTH +G R  L + +  Y +      ++   + S D+ 
Sbjct: 229 TYTSDFSETVLGFANNVKTSDGGTHITGFRTGLVKALNDYGKNQSILKEKDKKLDSTDIK 288

Query: 364 ISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
              + I++V I E   ++ GQTK KL +++A+   E    +  + +L +N   A  ++E 
Sbjct: 289 EGLIAIVTVKIPENLIQYEGQTKGKLGTVEAKTACERVTEESINFWLQENKTIAISIIEK 348

Query: 422 VIERSEERLRRRKQRE--VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
            +     R   RK R+   ++K  ++   + GKL           EL++VEGDSAGGSAK
Sbjct: 349 ALLARRARDEARKARQAVRDQKNKLKSRTMLGKLTPAQGKDKTLNELYLVEGDSAGGSAK 408

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
             R+R  QA+LPLRGK++N        +  N++I  ++ A+G    S +   D+ Y K+I
Sbjct: 409 SGRDRKFQAILPLRGKVINAEKTKLIDLLKNEEITTIINAIGAGIGSDFDISDVNYGKII 468

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT---QGTKSVYAHDEEH 596
           IMTDAD DGAHI +LLLTFFY+ M +LI  K +++  PPLF+IT        +Y   EE 
Sbjct: 469 IMTDADTDGAHIQTLLLTFFYRYMKELIINKMIYIAMPPLFKITTSSNKKDFMYLWTEEE 528

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
               L +  K  K KIEI R+KGLGEM A QL
Sbjct: 529 ----LSQHMKKSKSKIEIQRYKGLGEMNADQL 556


>gi|94983851|gb|ABF50630.1| DNA topoisomerase IV subunit B [Spiroplasma cantharicola]
          Length = 555

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 193/571 (33%), Positives = 298/571 (52%), Gaps = 25/571 (4%)

Query: 67  GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           G TD + LHHL  E++DN++DE +AG  + I VS++ +G +TV DNGRG+P+ ++ K  +
Sbjct: 1   GSTDSRGLHHLVWEIVDNSIDEALAGVCSEINVSIEKDGSVTVKDNGRGVPIGSY-KGTS 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           +ST EII + LHAGGKF    Y+ SGGLHGVG SVVNALS +  V + R   I   KF+ 
Sbjct: 60  QSTPEIIFSVLHAGGKFGGDGYKTSGGLHGVGSSVVNALSSKFKVIIHRDGLISQIKFAH 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  L    K+     + GT + F PD +       F  + + +  +  A L+  +K    
Sbjct: 120 GGKLVDQLKQIGTSKQTGTTVNFLPD-ETMFSTTKFSFSTISERLKESALLNSGLKLTLK 178

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
            ++         +  E+ +  GL  ++     ++  + S I    +E+       + +  
Sbjct: 179 DNRS-------DKYVEYLYENGLTEFVNELRGDQKALCSPIMLKGSEQNIDVEIALTYTT 231

Query: 307 AWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMI 364
              + +  +  + N + T +GGTH +G R  + + + +Y   +    ++   + S D+  
Sbjct: 232 ---DFSETVLGFANNVKTSDGGTHLTGFRTGMVKALNEYGKTQSILKEKDKKLDSSDIKE 288

Query: 365 SAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
             + I++V I E   ++ GQTK KL + +A+   E    + F  +L +N   A  ++E  
Sbjct: 289 GLIAIVTVKIPESLIQYEGQTKGKLGTSEAKYACEKVTEEHFSFWLQENKTIAISIIEKA 348

Query: 423 IERSEERLRRRKQREVNRKTAIRKLRLPG--KLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
           +     +   RK R+  R    +        KL           EL++VEGDSAGGSAK 
Sbjct: 349 LLARRAKEEARKARQAVRDQKSKSKSRTMLGKLTPAQGKNKQENELYLVEGDSAGGSAKS 408

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            R+R  QA+LPLRGK++N        +  N++I  ++ A+G    S +   D+ Y K+I+
Sbjct: 409 GRDRKFQAILPLRGKVINAEKTKLIDLLKNEEITTIINAIGAGIGSDFDISDINYGKIIL 468

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG---TKSVYAHDEEHK 597
           MTDAD DGAHI +LLLTFFY+ M +LI  K++++  PPLF+IT G      +Y   EE  
Sbjct: 469 MTDADTDGAHIQTLLLTFFYRYMKELIVNKNIYIAMPPLFKITTGSNKKDFMYLWTEEE- 527

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
              L    K  K KIEI R+KGLGEM A QL
Sbjct: 528 ---LASHMKKTKAKIEIQRYKGLGEMNADQL 555


>gi|19909553|dbj|BAB86972.1| DNA gyrase subunit B [Leptolyngbya boryana IAM M-101]
          Length = 546

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 214/555 (38%), Positives = 320/555 (57%), Gaps = 13/555 (2%)

Query: 73  ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
            LHHL  EV+DN++DE +AGY   I++S++ +G +TV D+GRGIP   HPK   KS LE 
Sbjct: 1   GLHHLVYEVVDNSVDEALAGYCKAIDISINADGSVTVTDDGRGIPTGIHPK-TGKSALET 59

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
           ++T LHAGGKF    Y++SGGLHGVGISVVNALS+ + VTV R+  +  Q+F RGI +  
Sbjct: 60  VMTILHAGGKFGGGGYKVSGGLHGVGISVVNALSEWVEVTVWREKKVHLQRFERGIAMGE 119

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
           L+ +   + + GT +TF PD  IF +   FD   L    +  AYL+G V+  ++  +E +
Sbjct: 120 LQVEPYPQARTGTSVTFLPDASIFTETTKFDYTTLSGRLRELAYLNGGVRIKFADHREGS 179

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
           E+      + +++ GG++ Y+      +  +  E+     E+ G  +  V         N
Sbjct: 180 ERE-----DVYFYEGGIREYISYMNREKQPLHEEVIFVSGERNGI-QVEVALQWCSDAYN 233

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGIL 370
             I  + N I T +GGTH  GL+  LTR +   A      +    ++  +++      ++
Sbjct: 234 DNIIGFANNIRTVDGGTHLEGLKAVLTRTLNTIARKRNKIKENESNLAGENIREGLTAVI 293

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV + +PEF GQTKTKL + + +  V++ + +    YL   P  +  ++E  ++  +   
Sbjct: 294 SVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFRPNVSDAIIEKAVQAFKAAE 353

Query: 431 RRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             R  RE+  RK+ +    LPGKLADC+      +E++IVEGDSAGGSAKQ R+R  QA+
Sbjct: 354 AARHAREMVRRKSVLESSTLPGKLADCASRDPSESEIYIVEGDSAGGSAKQGRDRRFQAI 413

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDG 548
           LPLRGKILN+      KI  N +I  L+ ALG   + +  +   LRY ++IIMTDADVDG
Sbjct: 414 LPLRGKILNIEKTDDSKIYKNTEIQALITALGLGIKGEEFDVSQLRYHRIIIMTDADVDG 473

Query: 549 AHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           AHI +LLLTFFY+    +++Q ++++  PPLF++ +G    Y + E   Q+ L  F  + 
Sbjct: 474 AHIRTLLLTFFYRYQRMMVDQGYVYIACPPLFKVERGRNHYYCYSERELQERLATFPDN- 532

Query: 609 KGKIEISRFKGLGEM 623
                I RFKGLGEM
Sbjct: 533 -ASYNIQRFKGLGEM 546


>gi|2182094|emb|CAA65022.1| DNA topoisomerase IV E subunit [Streptococcus pneumoniae]
          Length = 555

 Score =  445 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 198/567 (34%), Positives = 305/567 (53%), Gaps = 34/567 (5%)

Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187
            T+E+I T LHAGGKF    Y+ SGGLHGVG SVVNALS  L V + R   ++ Q+F  G
Sbjct: 1   PTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALSSWLEVEITRDGAVYKQRFENG 60

Query: 188 -IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
             P++ L+K     ++K GT++TF PD  IF     F    + +     A+L   V    
Sbjct: 61  GKPVTTLKKIGTALKSKTGTKVTFMPDATIFSTT-DFKYNTISERLNESAFLLKNVTLSL 119

Query: 246 SCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
           +  +         E  EF++  G++ ++    E++ +++  +   + E  G     VE A
Sbjct: 120 TDKR-------TDEAIEFHYENGVQDFVSYLNEDKEILTPVL-YFEGEDNG---FQVEVA 168

Query: 306 IAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDL 362
           + + +   +   S+ N + T +GGTHE+GL+ A+T+ +  YA  T    ++  ++   D 
Sbjct: 169 LQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKVMNDYARKTGLLKEKDKNLEGSDY 228

Query: 363 MISAVGILSVFIR--EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
                 +LS+ +     +F GQTK KL S  A+  V+  + D    +L++N   A+ L+ 
Sbjct: 229 REGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPVVDGIVADKLTFFLMENGELASNLIR 288

Query: 421 WVIERSEERLRRRKQREVNRKTAIRKLRL---PGKLADCSQNIAHGTELFIVEGDSAGGS 477
             I+  + R   RK R+ +R     K       GKL           EL++VEGDSAGGS
Sbjct: 289 KAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGS 348

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AKQ R+R  QA+LPLRGK++N A A    I  N++I  ++  +G    + +  ED  Y+K
Sbjct: 349 AKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANYDK 408

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT----KSVYAHD 593
           +IIMTDAD DGAHI +LLLTFFY+ M  L+E  H+++  PPL+++++G     +  YA  
Sbjct: 409 IIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWT 468

Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
           +   +++L++F K       + R+KGLGEM A QL ET M+   RTL+RV I      L 
Sbjct: 469 DGELEELLKQFGKGA----TLQRYKGLGEMNADQLWETTMNPETRTLIRVTIED----LA 520

Query: 654 DTQDSINKLMGTKADERFKFIQERASF 680
             +  +N LMG K + R K+I++   F
Sbjct: 521 RAERRVNVLMGDKVEPRRKWIEDNVKF 547


>gi|291542541|emb|CBL15651.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Ruminococcus bromii L2-63]
          Length = 661

 Score =  445 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 188/672 (27%), Positives = 316/672 (47%), Gaps = 37/672 (5%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +  + +YD +SI  L+G + VR RP +  G        H   E++ N++DE   GY   
Sbjct: 2   PRKKTTDYDNTSITTLKGADRVRKRPAVIFGSDGIDGCQHSVFEILSNSIDEAREGYGKK 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST---YEISGG 153
           I V+   +G + V D+GRGIPV+ + +   +   E++   L+AGGK++N+    YE S G
Sbjct: 62  ITVTRYSDGSIEVEDHGRGIPVD-YNENEKRYNWELVFCELYAGGKYNNNEGENYEFSLG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           ++G+G+      S+ + V + R    ++ +F +G  +  L+K+   +   GT+I ++PD 
Sbjct: 121 MNGLGLCSTQYSSEYMDVDIRRDGYRYTLRFEKGEIVGKLKKEPYSKKDTGTKIHWKPDL 180

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           ++F D         L + + +A ++  ++  +             +   + +  G+  ++
Sbjct: 181 EVFTD-IDIQPEYFLDIMKRQAIVNAGIEFVFRNQ-----NGKSFDTTSYNYVNGIVDHV 234

Query: 274 QTKLENRSLISSEIFTGKT-----EKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGG 328
              +    L S + +  +      + K  ++  ++ ++A+  +      Y N+   + GG
Sbjct: 235 AEVVGENGLSSIQHWETEVKTRDRDDKPEYKCKMDISVAFSNKVHLTEYYHNSSWLEHGG 294

Query: 329 THESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
             +  +R A    I  Y +      K    I  DD+  S V ++S F     +  QTK  
Sbjct: 295 APDKAVRNAFVYQIDSYLKQNNKYNKTESKIKYDDVEDSLVCVISSFSSVSSYENQTKKA 354

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR---EVNRKTA 443
           + +   Q  +   LR   + Y ++NP+EA K+ E V+     R    K R   +      
Sbjct: 355 VTNKGIQDAMTAFLRQSLEVYFIENPLEAEKICEQVLINKRSRENAEKTRLNIKKKLSGN 414

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +       K  DC        ELFIVEGDSA G+ KQARN   QA++P+RGKILN   A 
Sbjct: 415 LDITNRVAKFVDCRSKDTEQRELFIVEGDSALGACKQARNPDFQAIMPIRGKILNCLKAD 474

Query: 504 SEKIRNNQQIMDLVQALGC---------RTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554
            +KI  ++ I DL++ LGC         +  S +    LR+ K+I+ TDADVDG  I +L
Sbjct: 475 YDKIFKSEIITDLLKVLGCGVEVKSKANKNLSSFDMNALRWSKIILCTDADVDGFQIRTL 534

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           LLT  Y+    LIE+  +F+   PL+ IT      +A+DE  K K +E+    GK K  I
Sbjct: 535 LLTMLYRLTPTLIEEGKVFIAESPLYEITSKNDVYFAYDEVEKDKFIEQL---GKEKFTI 591

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
            R KGLGE     +  T M+   R L++V         + T +  + L+G     R  +I
Sbjct: 592 QRSKGLGENEPDMMNLTTMNPESRRLIKV----LPADAEQTAEIFDVLLGDNLQGRKDYI 647

Query: 675 QERAS-FIDDVG 685
            E  + +ID + 
Sbjct: 648 VEHGNEYIDQLD 659


>gi|303250664|ref|ZP_07336861.1| truncated DNA topoisomerase IV subunit B [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302650652|gb|EFL80811.1| truncated DNA topoisomerase IV subunit B [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 570

 Score =  445 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 224/572 (39%), Positives = 322/572 (56%), Gaps = 23/572 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             Y A  I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE ++GYA+ I+V L
Sbjct: 4   KRYGADEITVLKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALSGYASQIDVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  L V+DNGRG+PV+ H      S +E+I+T LHAGGKF N  Y  SGGLHGVGISV
Sbjct: 61  HADNSLEVIDNGRGMPVDIHS-TEKISGVELIMTKLHAGGKFSNKNYTFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + + + R   I++  F  G+ +  L       + + GT + F P+PK F    
Sbjct: 120 VNALSQRVEIKIKRNGEIYTIAFENGVKVEELTVIGSCPKKQTGTTVRFYPNPKYFDS-P 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L  ++   +         +     E +Y+  GL  YL   L+  
Sbjct: 179 RFSVSRLRHLLRAKAVLCPKLTINFVD-------HINNNSETWYYEDGLSDYLSEALKEF 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             + +  F G    +      V WA+ W  E  E    SY N I T +GGTH +GLR  L
Sbjct: 232 ECLPNPPFIGDVISETE---AVSWALTWLPEGGELVAESYVNLIPTAQGGTHVNGLRNGL 288

Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
            + + ++ E+     +++ + +DD+      +LS+ I+EP+FAGQTK +L S  A   V+
Sbjct: 289 LKAMVEFCEIHNLLPKSVKLTTDDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVD 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
           + ++D F  +L QN      + E  I  ++ RLR    ++V RK  +    LPGKLADC+
Sbjct: 349 STIKDAFSLWLNQNVQTGKLIAEMAISSAQSRLR--AAKKVVRKKLVSGPALPGKLADCT 406

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 TELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN     S+++  +Q++ D+ 
Sbjct: 407 SQDLSRTELFLVEGDSAGGSAKQARDKDYQAILPLRGKILNTWEVSSDQVLASQEVHDIA 466

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            ALG    S    E+LRY KV I+ DAD DG HIA+LL   F +   +L++  H+++  P
Sbjct: 467 VALGIDPDSDS-LEELRYGKVCILADADSDGLHIATLLCALFLRHFPNLVKNGHVYVAMP 525

Query: 578 PLFRITQGT-KSVYAHDEEHKQKILEEFKKHG 608
           PL+RI  G  +  YA DE  K+ IL    K  
Sbjct: 526 PLYRIDIGKDEVHYALDEAEKEAILARLAKKK 557


>gi|115381166|gb|ABI96232.1| DNA topoisomerase IV subunit B [Mesoplasma syrphidae]
          Length = 552

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 214/570 (37%), Positives = 309/570 (54%), Gaps = 26/570 (4%)

Query: 67  GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           G TD + LHHL  E++DN++DE +AGYA  I V L+ NG +TV DNGRG+P+  H     
Sbjct: 1   GSTDGRGLHHLVWEIVDNSIDEALAGYATEINVVLEKNGSVTVSDNGRGVPIGMH--ATG 58

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           K T E+I + LHAGGKF  S Y+ SGGLHGVG SVVNALS +  VT+ R   I   +F  
Sbjct: 59  KPTPEVIFSVLHAGGKFGGSGYKTSGGLHGVGSSVVNALSKKFKVTIHRDKQINEIEFKD 118

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  L+    +     K GT + F PD  IF          + +  +  A L+  ++    
Sbjct: 119 GGKLAKPLVQTGNTYKTGTTVNFLPDDSIFTTTKF-SFTTIAERLKESALLNSGLQITLK 177

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
            +          +  E+ +  GL+ +++   E+   I+  +      K    R   E  +
Sbjct: 178 DE-------TTDKHVEYNYENGLQEFVRELGEDFKKITDPVTV----KGDVRRIEAEICL 226

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            + E+    +  + N + T +GGTH +G +  L R I  YA+ T+   ++   + S+DL 
Sbjct: 227 QYTEDYNETVLGFANNVKTSDGGTHITGFKAGLARAINDYAKNTKILKEKEARLDSNDLR 286

Query: 364 ISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
              + I++V I E   E+ GQTK KL + DA+  VE    + F+ +L +N + ATK++E 
Sbjct: 287 EGLIAIVTVKIPEDLIEYEGQTKGKLGTPDAKAAVEQITYNFFNFWLTENKVPATKIVEK 346

Query: 422 VIERSEERLRRRKQREVNRKTAIRKLRLPG--KLADCSQNIAHGTELFIVEGDSAGGSAK 479
            +     R   RK R+  R T  +K       KL           EL++VEGDSAGGSAK
Sbjct: 347 ALLARRAREEARKARQAIRDTKGKKQGRSMLGKLTPAQGRKKAINELYLVEGDSAGGSAK 406

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
             R+R+ QA+LPLRGK++N   A    +  N++I  ++ A+G    S +   D+ Y KVI
Sbjct: 407 SGRDRTFQAILPLRGKVINSEKAKIADLMKNEEINTIITAIGAGIGSDFEIADINYGKVI 466

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQ 598
           IMTDAD DGAHI +LLLTFF++ M DLI  KH+F+  PPL+++T    S  Y  DE+   
Sbjct: 467 IMTDADTDGAHIQTLLLTFFFRYMKDLIVNKHIFIALPPLYKLTFSDHSFIYLWDEDE-- 524

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             L E+ ++ K K EI R+KGLGEM A QL
Sbjct: 525 --LAEYSRNSKKKFEIQRYKGLGEMNADQL 552


>gi|115381182|gb|ABI96240.1| DNA topoisomerase IV subunit B [Spiroplasma gladiatoris]
          Length = 552

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 201/569 (35%), Positives = 304/569 (53%), Gaps = 24/569 (4%)

Query: 67  GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           G TD + LHHL  E++DN++DE +AG+ + I V ++ +G +TV DNGRG+P+  + K  N
Sbjct: 1   GSTDVRGLHHLVWEIVDNSIDEALAGFCDEINVVIEKDGSITVKDNGRGVPIGMY-KGTN 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           KST EII + LHAGGKF    Y+ SGGLHGVG SVVNALS +  VT+ R   I    FS+
Sbjct: 60  KSTPEIIFSVLHAGGKFGGDGYKTSGGLHGVGSSVVNALSSKFKVTIYRDGIISKIGFSK 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  L    K        GT + F PD  IF     F  + + +  +  A L+  +K    
Sbjct: 120 GGNLVTPLKNAGNSKLTGTVVNFLPDETIFSTT-KFSFSTISERLKESALLNSGLKITLK 178

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
            ++         +  E+ +  GL  ++     N+  + + I      K       VE A+
Sbjct: 179 DERS-------DKFVEYKYDNGLIEFVNELKGNQKEMCNPILI----KGQDSEIDVEIAL 227

Query: 307 AWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
            + ++  E    + N + T +GGTH SG +  L + + +Y       +   + ++D+   
Sbjct: 228 TYTDDFSENLMGFANNVKTSDGGTHISGFKTGLLKSLNEYGREQGILKDKKLEANDVKEG 287

Query: 366 AVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
            + +++V I E   ++ GQTK KL + +A+   E    + F  +L +N   A  ++E  +
Sbjct: 288 LIAVVTVKIPENLIQYEGQTKGKLGTSEAKSACEKITEEIFGFWLQENKAIALSIIEKAL 347

Query: 424 ERSEERLRRRKQRE--VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
              + R   RK R+   ++KT  R   + GKL           ELF+VEGDSAGGSAK  
Sbjct: 348 LARKARDEARKARQAIRDQKTKTRGKTMLGKLTPAQGKDKSINELFLVEGDSAGGSAKSG 407

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541
           R+R  QA+LPLRGK++N        +  N++I  ++ A+G    S +   D+ Y K+IIM
Sbjct: 408 RDRKFQAILPLRGKVINAEKTKILDLLKNEEITSIINAIGAGMGSDFDISDINYGKIIIM 467

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT--QGTKSVYAHDEEHKQK 599
           TDAD DGAHI +LLLTFFY+ M +LI  K++++  PPLF++T       +Y   E+   +
Sbjct: 468 TDADTDGAHIQTLLLTFFYRYMKELITNKNIYIAMPPLFKVTQSNKKDFIYLWTEDELAQ 527

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQL 628
            +++ K     KIEI R+KGLGEM A QL
Sbjct: 528 YMKKTKN----KIEIQRYKGLGEMNAIQL 552


>gi|312601151|gb|ADQ90406.1| DNA gyrase subunit B [Mycoplasma hyopneumoniae 168]
          Length = 577

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 212/587 (36%), Positives = 319/587 (54%), Gaps = 21/587 (3%)

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +++ D+GRGIP   HPK+   S  E++ T LHAGGKFD  +Y++SGGLHGVG SVV
Sbjct: 2   DDFKISIEDDGRGIPTGIHPKYE-ISAAEVVFTVLHAGGKFDGKSYKVSGGLHGVGASVV 60

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN--KRGTRITFRPDPKIFGDKA 220
           NALS EL V + R   ++ QKF  G   +         +  + GT+I F PD +I     
Sbjct: 61  NALSKELEVFIKRDGKLWYQKFINGGQKTADLSVISNIDSSQSGTKIIFSPDFEILEKN- 119

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN- 279
            F    +    ++ AYL+ R++      +           + F F GG+  Y+    +N 
Sbjct: 120 SFQLLTIFNRLKNTAYLTRRIEFELIDKRS-------DFSQTFCFEGGISDYVDELSKNF 172

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLRVAL 338
           + L ++ I++    +       VE+A+ +  E++ +I SY N I   EGG+HE+GL   L
Sbjct: 173 KKLTNTIIYSENQYEHNQDTIKVEFALNYVQEDHSQIKSYTNNIHNPEGGSHENGLCDGL 232

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
            R +  YA   +         +  D+    + I+S+    P F GQTK KL + + ++ V
Sbjct: 233 LRILNNYALSNKFIKSETDKFVKQDIKDGLIAIVSIKHTNPIFEGQTKAKLNNKEVRQFV 292

Query: 397 ENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
             A  + F  YL +NP +A K++   ++ +   R  +  +  + RK+A     LPGKLAD
Sbjct: 293 NKAFSEVFQRYLAENPEDAKKIIARNLLAQKAARAAKSAREAIKRKSAFDIGTLPGKLAD 352

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C+   +   EL+IVEG+SAGGSAK  R+R  QA+LPLRGK++N      EK+  N++I+ 
Sbjct: 353 CATKNSEIAELYIVEGNSAGGSAKMGRDRHFQAILPLRGKVINSQRFQLEKVLKNEEILS 412

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++ A G     ++    +RY+K+IIMTDAD DG+HI SLLLTF ++    LIE   +++ 
Sbjct: 413 MITAFGTGVGPEFDISKIRYQKIIIMTDADSDGSHIRSLLLTFLFRYFKKLIEFGFVYIA 472

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPL++I+QG K  YA++E  K+K L E  K    K  I R+KGLGEM   QL ET MD 
Sbjct: 473 IPPLYKISQGKKIFYAYNEREKEKFLAEILKEN-SKFTIQRYKGLGEMNPEQLWETTMDP 531

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
             R + +V+I    + L+      + LMGT    R  FI+E A +  
Sbjct: 532 QTRRMYQVQI----HDLEVVAQVFDSLMGTDVTMRKIFIEENAQYAK 574


>gi|289669614|ref|ZP_06490689.1| DNA topoisomerase IV subunit B [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 562

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 222/571 (38%), Positives = 323/571 (56%), Gaps = 21/571 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y+A+ I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AG+A  +EV+L  
Sbjct: 5   YNAADIEVLSGLDPVKRRPGMY---TDTARPNHLAQEVIDNSVDEALAGHAKQVEVTLYK 61

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G   V D+GRG+PV+ HP+      +E+ILT LHAGGKF+N  Y  SGGLHGVG+SVVN
Sbjct: 62  DGSCEVSDDGRGMPVDIHPE-EKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVSVVN 120

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222
           ALS ++ + + R+ +    +F  G   S LE    V +   GTR+ F  DPK F     F
Sbjct: 121 ALSTKVELFIKREGSEHRMEFRDGNAASKLEVVGTVGKKNTGTRLRFWADPKYFDTP-KF 179

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L  + ++KA L   +      +          E++ +YF  GL+ YL+ ++    +
Sbjct: 180 NVRALRHLLRAKAVLCPGLTVKLHDE-------ATDEQDSWYFENGLRDYLKGEMAEHEM 232

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRG 341
           + +E+F G  +K       V+WA AW  E      SY N I T + GTH +GLR  LT  
Sbjct: 233 LPAELFVGSLKKDTEI---VDWAAAWVPEGELVQESYVNLIPTAQHGTHVNGLRSGLTDA 289

Query: 342 IKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
           ++++ +      R + +  +D+      +LS+ + +P+F+GQTK +L S  A   +E A 
Sbjct: 290 LREFCDFRNLLPRGVKLAPEDVWDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAA 349

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
            D F  YL QN     K+ +  I+R+  RL+   ++++ RK   +   LPGKLADC    
Sbjct: 350 LDAFSLYLNQNVEIGEKIAQIAIDRASARLK--TEKQIVRKKVTQGPALPGKLADCISQD 407

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              TELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN     S  +  ++++ +L  A+
Sbjct: 408 LSRTELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVTSGSVLASEEVHNLAIAI 467

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           GC          LRY KV+I+ DAD DG HIA+LL   F Q    L+   H+F+  PPLF
Sbjct: 468 GCDPGKDDI-TGLRYGKVVILADADSDGLHIATLLTALFLQHFPALVAAGHVFVAMPPLF 526

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGK 611
           R+  G +  YA DEE K  +L++  +     
Sbjct: 527 RVDVGKQVFYALDEEEKTTLLDKIAREKMKG 557


>gi|50379869|gb|AAT76295.1| DNA gyrase subunit B [Fusobacterium canifelinum]
          Length = 522

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 214/526 (40%), Positives = 303/526 (57%), Gaps = 15/526 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y+A +I +LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AGY N IEV + 
Sbjct: 6   SYEAQNITVLEGLEAVRKRPGMYIGTTSERGLHHLVWEIVDNSVDEALAGYCNKIEVKIL 65

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
               + VVDNGRGIP + HPK+  KS LEI+LT LHAGGKF+N  Y++SGGLHGVG+SVV
Sbjct: 66  PENIIEVVDNGRGIPTDIHPKY-GKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGVSVV 124

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L V V +   ++ QK+ RG P   ++        + GT + F+ D  IF     
Sbjct: 125 NALSEWLEVEVRKNGVVYYQKYHRGKPEEDVKIIGSCDEGEHGTIVRFKADGDIFETLI- 183

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L    +  AYL+  +    S  ++  +K  I     + F GG+  +L   ++  +
Sbjct: 184 YNYFTLSNRLKELAYLNKGLTIVLSDLRKEEKKEEI-----YKFDGGILDFLNEIVKEEA 238

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLRVALTR 340
            I  + F   +E+       V+    +   +N  I S+ N I T EGGTH  G R ALT+
Sbjct: 239 TIIEKPFYVSSEQDNV---GVDVTFTYTTSQNEVIYSFVNNINTHEGGTHVQGFRTALTK 295

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I    +       +   ++ +D+    VGI+S  I +P+F GQTK KL + +    V  
Sbjct: 296 VINDVGKAQGLLKDKDGKLMGNDIREGVVGIVSTKIPQPQFEGQTKGKLGNSEVSGIVNT 355

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCS 457
            + +    +L  NP     ++E ++   + R   +K RE+  + + +    LPGKLADC+
Sbjct: 356 IVSNSLKIFLEDNPNITKIIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCT 415

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
              A   E+FIVEGDSAGGSAKQ R+R NQA+LPLRGKI+NV  AG  K   + +I  +V
Sbjct: 416 SKKAEECEIFIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMV 475

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            A G      +    LRY K+I+MTDADVDGAHI +L+LTF Y+ M
Sbjct: 476 TAFGTSIGETFDISKLRYGKIILMTDADVDGAHIRTLILTFLYRYM 521


>gi|94983861|gb|ABF50635.1| DNA topoisomerase IV subunit B [Spiroplasma phoeniceum]
 gi|94983863|gb|ABF50636.1| DNA topoisomerase IV subunit B [Spiroplasma phoeniceum]
          Length = 554

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 217/571 (38%), Positives = 305/571 (53%), Gaps = 26/571 (4%)

Query: 67  GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           G TD + LHHL  E+IDN++DE +AGY N I++ +  N  + V DNGRG+P   H     
Sbjct: 1   GSTDVRGLHHLVWEIIDNSIDEALAGYCNEIDIIIYKNNAIMVADNGRGVPTGIH--SSG 58

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           KST E+I + LHAGGKF    Y+ SGGLHGVG SVVNALS    VT+ R + ++S KF+ 
Sbjct: 59  KSTPEVIFSVLHAGGKFGGDGYKTSGGLHGVGSSVVNALSSTFDVTIYRDHKVWSIKFAN 118

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  +     K     K GT +TF PD KIF     F  + + +  +  A+L+  VK   +
Sbjct: 119 GGQVKEPLTKIGTTTKTGTTVTFLPDHKIFKVI-DFSFSTISERIRESAFLNSGVKLTLT 177

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +         +K  + F  GL+ ++    E +  I+  I     EK+      ++++ 
Sbjct: 178 DQR-------TDKKVSYLFNNGLEEFITYMNEGKKSITPIIMLKGIEKQIEVEIALQYST 230

Query: 307 AWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMI 364
              E N  + S+ N + T EGG+H +G R  LT+ I  YA       ++  ++ S D   
Sbjct: 231 ---EFNENLLSFANNVKTSEGGSHVAGFRTGLTKVINDYARKEGLLKEKDKNLDSVDTRE 287

Query: 365 SAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
               I+SV I E   ++ GQTK KL + +A+  VE  +   F  +L +N   A  ++E  
Sbjct: 288 GLTAIVSVKIPENLIQYEGQTKGKLGTYEARLVVETIVSKQFGFWLTENKANAYTIIEKA 347

Query: 423 IERSEERLRRRKQREVNRKTAIRKLRL---PGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +     R   RK RE  R +  R        GKL           E+F+VEGDSAGGSAK
Sbjct: 348 LLARNVREEARKAREAARNSKKRGNSDRLLTGKLTPAQNRNKFNNEIFLVEGDSAGGSAK 407

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
             R+R  QA+LPLRGK++N   A  + + NN++I  ++ A+G    + +   D  Y KVI
Sbjct: 408 LGRDRRFQAILPLRGKVINAEKAKIQDLMNNEEINVMINAIGTGVGNGFDINDANYGKVI 467

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI--TQGTKSVYAHDEEHK 597
           IMTDAD DGAHI +LLLTFFY+ M  LIE   ++L  PPLF+I  T+     YA DE   
Sbjct: 468 IMTDADTDGAHIQTLLLTFFYRYMRPLIENHRVYLALPPLFKITSTKNKHIEYAWDETEL 527

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           +  L +F     GK E+ R+KGLGEM A QL
Sbjct: 528 KNKLSQFH----GKFELQRYKGLGEMNAEQL 554


>gi|168702514|ref|ZP_02734791.1| DNA gyrase subunit B [Gemmata obscuriglobus UQM 2246]
          Length = 810

 Score =  443 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 200/558 (35%), Positives = 302/558 (54%), Gaps = 17/558 (3%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y   +++ L+    +R RPGMYIG TD + +HHL  EV+ N++DE +AG+   I +++  
Sbjct: 11  YTEDNLQTLKDAAHIRHRPGMYIGNTDIEGMHHLVWEVVYNSVDEALAGFCKNIFITVHS 70

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +  +TV D+GRGIPV        KSTLE  LT   + GKF+N  Y+ S GLHG+G   +N
Sbjct: 71  DESITVSDDGRGIPVGV-KADTGKSTLEEALTIAGSSGKFNNDAYKTSAGLHGMGAKAMN 129

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222
           ALS+     + R   ++  +F +G   S LE      + + GT ITF+PDP+ FGD   F
Sbjct: 130 ALSEWCTAEIKRDGRVYKMEFEKGYATSKLEDLGPAPKGQTGTTITFKPDPEKFGDIL-F 188

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D  RL    Q  ++L+  +K   + ++       + + + F+   G+  Y++    +   
Sbjct: 189 DYDRLGTRFQQISFLNKGLKLALADER-------VGKSDTFHSERGIAEYVEVLNRSEQT 241

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRG 341
               I+      K     TVE    + +   +    + N     +GGTH SG R  LTR 
Sbjct: 242 NYPLIYI----NKQIDGVTVEVCFQYTQGETKLEMCFTNNAYNKDGGTHLSGFRGGLTRA 297

Query: 342 IKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
           I  Y +     + I +  DD       ++++   +P+F  QTK KL S + +    + + 
Sbjct: 298 IGHYGKKANLFKEIELRGDDFREGLTAVINISHPQPKFESQTKVKLTSPEVEGQTSSVVY 357

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE--VNRKTAIRKLRLPGKLADCSQN 459
           +    YL +NP EA ++ + V+  +E R+  +K R+    RK A+    LPGKL DCS  
Sbjct: 358 EVLSDYLERNPKEAERICKKVLLTAEARIAAKKARDAVKGRKDALNSGGLPGKLYDCSSR 417

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
               TELF+VEGDSAGGSA+  R+R  QA+LPLRGK+LNV  A  EK+  N +I  L+ A
Sbjct: 418 DRENTELFLVEGDSAGGSAESGRDREFQAILPLRGKVLNVEKAKFEKLLENNEISALISA 477

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           +G    +      +RY K+IIMTDADVDG HI +LLLTFF+++M  LIE  H+F+  PPL
Sbjct: 478 VGVDIDNVEDVSKVRYGKIIIMTDADVDGQHIRTLLLTFFFRQMRKLIEAGHVFVARPPL 537

Query: 580 FRITQGTKSVYAHDEEHK 597
           +++TQ  ++ +    E  
Sbjct: 538 YKVTQKKETRFIQSREEM 555



 Score =  111 bits (276), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 5/90 (5%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++++ E ++ G+  I ++RFKGLGEM   +L  T +D   RTLL+V +N         +
Sbjct: 722 LRELVIEIRRLGEKGIAVTRFKGLGEMDPEELWATTLDPQYRTLLKVTLNDAFK----AE 777

Query: 657 DSINKLMGTKADERFKFIQERA-SFIDDVG 685
           +    LMG +  +R  FI   +   ++D+ 
Sbjct: 778 EMFRTLMGKEVQDRKAFIFSNSLKSVEDID 807


>gi|94983859|gb|ABF50634.1| DNA topoisomerase IV subunit B [Spiroplasma phoeniceum]
          Length = 554

 Score =  443 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 217/571 (38%), Positives = 305/571 (53%), Gaps = 26/571 (4%)

Query: 67  GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           G TD + LHHL  E+IDN++DE +AGY N I++ +  N  + V DNGRG+P   H     
Sbjct: 1   GSTDVRGLHHLVWEIIDNSIDEALAGYCNEIDIIIYKNNAIMVADNGRGVPTGIH--SSG 58

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           KST E+I + LHAGGKF    Y+ SGGLHGVG SVVNALS    VT+ R + ++S KF+ 
Sbjct: 59  KSTPEVIFSVLHAGGKFGGDGYKTSGGLHGVGSSVVNALSSTFDVTIYRDHKVWSIKFAN 118

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  +     K     K GT +TF PD KIF     F  + + +  +  A+L+  VK   +
Sbjct: 119 GGQVKEPLTKIGTTTKTGTTVTFLPDHKIFKVI-DFSFSTISERIRESAFLNSGVKLTLT 177

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +         +K  + F  GL+ ++    E +  I+  I     EK+      ++++ 
Sbjct: 178 DQR-------TDKKVSYLFNNGLEEFITYMNEGKKSITPIIMLKGIEKQIEVEIALQYST 230

Query: 307 AWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMI 364
              E N  + S+ N + T EGG+H +G R  LT+ I  YA       ++  ++ S D   
Sbjct: 231 ---EFNENLLSFANNVKTSEGGSHVAGFRTGLTKVINDYARKEGLLKEKDKNLDSVDTRE 287

Query: 365 SAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
               I+SV I E   ++ GQTK KL + +A+  VE  +   F  +L +N   A  ++E  
Sbjct: 288 GLTAIVSVKIPENLIQYEGQTKGKLGTYEARLVVETIVAKQFGFWLTENKANAYTIIEKA 347

Query: 423 IERSEERLRRRKQREVNRKTAIRKLRL---PGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +     R   RK RE  R +  R        GKL           E+F+VEGDSAGGSAK
Sbjct: 348 LLARNVREEARKAREAARNSKKRGNSDRLLTGKLTPAQNRNKFNNEIFLVEGDSAGGSAK 407

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
             R+R  QA+LPLRGK++N   A  + + NN++I  ++ A+G    + +   D  Y KVI
Sbjct: 408 LGRDRRFQAILPLRGKVINAEKAKIQDLMNNEEINVMINAIGTGVGNGFDINDANYGKVI 467

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI--TQGTKSVYAHDEEHK 597
           IMTDAD DGAHI +LLLTFFY+ M  LIE   ++L  PPLF+I  T+     YA DE   
Sbjct: 468 IMTDADTDGAHIQTLLLTFFYRYMRPLIENHRVYLALPPLFKITSTKNKHIEYAWDETEL 527

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           +  L +F     GK E+ R+KGLGEM A QL
Sbjct: 528 KNKLSQFH----GKFELQRYKGLGEMNAEQL 554


>gi|50379847|gb|AAT76294.1| DNA gyrase subunit B [Fusobacterium canifelinum]
          Length = 522

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 213/526 (40%), Positives = 303/526 (57%), Gaps = 15/526 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y+A +I +LEGLE VR RPGMYIG T E+ LHHL  E++DN++DE +AGY N IEV + 
Sbjct: 6   SYEAQNITVLEGLEAVRKRPGMYIGTTSERGLHHLVWEIVDNSVDEALAGYCNKIEVKIL 65

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
               + VVDNGRGIP + HPK+  KS LEI+LT LHAGGKF+N  Y++SGGLHGVG+SVV
Sbjct: 66  SENIIEVVDNGRGIPTDIHPKY-GKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGVSVV 124

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKAG 221
           NALS+ L   V +   ++ QK+ RG P   ++        + GT + F+ D +IF     
Sbjct: 125 NALSEWLEAEVRKNGVVYYQKYHRGKPEEDVKIIGSCDESEHGTIVRFKADGEIFETLI- 183

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L    +  AYL+  +    S  ++  +K  I     + F GG+  +L   ++  +
Sbjct: 184 YNYFTLSNRLKELAYLNKGLTIVLSDLRKEEKKEEI-----YKFDGGILDFLNEIVKEEA 238

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLRVALTR 340
            I  + F   +E+       V+    +   +N  I S+ N I T EGGTH  G R ALT+
Sbjct: 239 TIIEKPFYVSSEQDNV---GVDVTFTYTTSQNEVIYSFVNNINTHEGGTHVQGFRTALTK 295

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I    +       +   ++ +D+    VGI+S  I +P+F GQTK KL + +    V  
Sbjct: 296 VINDVGKAQGLLKDKDGKLMGNDIREGVVGIVSTKIPQPQFEGQTKGKLGNSEVSGIVNT 355

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCS 457
            + +    +L  NP     ++E ++   + R   +K RE+  + + +    LPGKLADC+
Sbjct: 356 IVSNSLKIFLEDNPNITKIIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCT 415

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
              A   E+FIVEGDSAGGSAKQ R+R NQA+LPLRGKI+NV  AG  K   + +I  +V
Sbjct: 416 SKKAEECEIFIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMV 475

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            A G      +    LRY K+I+MTDADVDGAHI +L+LTF Y+ M
Sbjct: 476 TAFGTSIGETFDIAKLRYGKIILMTDADVDGAHIRTLILTFLYRYM 521


>gi|154496379|ref|ZP_02035075.1| hypothetical protein BACCAP_00667 [Bacteroides capillosus ATCC
           29799]
 gi|150274462|gb|EDN01539.1| hypothetical protein BACCAP_00667 [Bacteroides capillosus ATCC
           29799]
          Length = 660

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 171/667 (25%), Positives = 294/667 (44%), Gaps = 37/667 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
            AS  Y   SI  L+G + VR RP +  G    +   H   E++ NA+DE   G+ ++I 
Sbjct: 3   KASKTYGNESISALKGADRVRKRPAVIFGSDGLEGCEHAVFEILSNAIDEAREGHGSVIT 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLH 155
           V+   +  + V D GRG PV+ + K   K   E++   L+AGGK++N     YE S GL+
Sbjct: 63  VTRYEDKSIEVEDFGRGCPVDWNEK-EQKYNWELVFCELYAGGKYNNNDGDNYEYSLGLN 121

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           G+G       S+     + R    ++  F +G  +  L+K+     K G++  ++PD ++
Sbjct: 122 GLGSCATQYASEYFDAVIHRDGFEYTLHFEKGENIGGLKKEPYTGKKTGSKFRWKPDLEV 181

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F D         L + + +A ++  V   +        +        F +  G++ Y++ 
Sbjct: 182 FTD-ISIPVEYYLDVMKRQAVVNAGVTFRFRNQVGSKFEATE-----FKYDNGIEDYVKE 235

Query: 276 KLENRSLISSEIFTGK-----TEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330
                 L     +  +      E K  ++  +  +  +      I  Y N+   + GG+ 
Sbjct: 236 LAGENPLTQPVFWQTERKGRDREDKPEYKVKLSVSFCFSNAVQIIEHYHNSSWLEHGGSP 295

Query: 331 ESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           E  +R A    I  Y +      K    I  +D+    + + + F  +  +  QTK  + 
Sbjct: 296 EKAMRSAFVSAIDGYLKAQGKYQKSESKITWNDIQDCLILVSNNFSTQTSYENQTKKAIN 355

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR---EVNRKTAIR 445
           +   Q  +   L+   + Y ++NP +A K+ E V+     R    K R   +     ++ 
Sbjct: 356 NKFVQEAMTEFLKSQMEVYFIENPFDAQKIGEQVLINKRARENAEKARLNIKKKLTGSMD 415

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
                 K  DC        EL+IVEGDSA G+ K +R+   Q ++P+RGKILN   A   
Sbjct: 416 ISNRVQKFVDCRTKDTERRELYIVEGDSAMGAVKLSRDAEFQGIMPVRGKILNCLKADYA 475

Query: 506 KIRNNQQIMDLVQALGCRTRSQYRE---------EDLRYEKVIIMTDADVDGAHIASLLL 556
           KI  ++ I DL++ LGC      +           +LR+ KV+I TDADVDG  I +L+L
Sbjct: 476 KIFKSEIITDLLKVLGCGVEVNDKHAKDMATFDLMNLRWNKVVICTDADVDGFQIRTLIL 535

Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616
           T  Y+    LI++ ++++   PL+ I    K+ +A+ ++ K  IL   +     K  + R
Sbjct: 536 TMLYRLTPTLIQRGYVYIAESPLYEINCKEKTWFAYSDKEKNDILASLEG---KKFTVQR 592

Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
            KGLGE     +  T M+   R L++V        ++ T    + L+G     R   I E
Sbjct: 593 SKGLGENEPDMMWLTTMNPETRRLIKVM----PEDVERTAQVFDLLLGDNLQGRKDHIAE 648

Query: 677 RA-SFID 682
               +++
Sbjct: 649 NGYKYLE 655


>gi|94983843|gb|ABF50626.1| DNA topoisomerase IV subunit B [Spiroplasma floricola]
 gi|94983845|gb|ABF50627.1| DNA topoisomerase IV subunit B [Spiroplasma floricola]
          Length = 555

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 193/571 (33%), Positives = 300/571 (52%), Gaps = 25/571 (4%)

Query: 67  GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           G TD + LHHL  E++DN++DE +AG    I VS++ +G +TV DNGRG+P+ N+ K   
Sbjct: 1   GSTDSRGLHHLVWEIVDNSIDEALAGVCTEINVSIEKDGSVTVKDNGRGVPIGNY-KGTT 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           +ST EII + LHAGGKF    Y+ SGGLHGVG SVVNALS +  VT+ R   I   KF+ 
Sbjct: 60  QSTPEIIFSVLHAGGKFGGDGYKTSGGLHGVGSSVVNALSSKFKVTIYRDGVISKIKFAN 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  L    K+     + GT + F PD +       F  + + +  +  A L+  +K    
Sbjct: 120 GGKLVQPLKQIGTSKQNGTVVNFLPD-ETMFSTTKFSFSTISERLKESALLNSGLKLTLK 178

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
            ++         +  E+ +  GL  ++      +  + S I    +E+       + +  
Sbjct: 179 DNRS-------DKYVEYIYENGLTEFVNELKGGQKSLCSPILLKGSEQNIDVEIALTYTT 231

Query: 307 AWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMI 364
              + +  +  + N + T +GGTH +G R  L + + +Y +      ++   + S D+  
Sbjct: 232 ---DFSETVLGFANNVKTSDGGTHVTGFRTGLVKALNEYGKTENILKEKDKRLDSSDIKE 288

Query: 365 SAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
             + I++V + E   ++ GQTK KL + +A+   E         +L +N   A  ++E  
Sbjct: 289 GLIAIVTVKVPEDLIQYEGQTKGKLGTSEARTACEKVTEQSISFWLQENKTIAISIIEKA 348

Query: 423 IERSEERLRRRKQRE--VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
           +   + +   RK R+   ++K+  +   + GKL           ELF+VEGDSAGGSAK 
Sbjct: 349 LLARKAKEEARKARQAVRDQKSKFKARNMLGKLTPAQGKNKEDNELFLVEGDSAGGSAKS 408

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            R+R  QA+LPLRGK++N        +  N++I  ++ A+G    S +   D  Y K+I+
Sbjct: 409 GRDRKFQAILPLRGKVINAEKTKLIDLLKNEEITTIINAIGAGIGSDFDLSDSNYGKIIL 468

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG---TKSVYAHDEEHK 597
           MTDAD DGAHI +LLLTFFY+ M +LI  K++++  PPLF++T G      +Y   E+  
Sbjct: 469 MTDADTDGAHIQTLLLTFFYRYMKELIINKNIYIAMPPLFKVTTGSNKKDFIYLWTEDEL 528

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
            K +    K  K K+EI R+KGLGEM A QL
Sbjct: 529 TKFM----KKAKSKLEIQRYKGLGEMNADQL 555


>gi|288561860|gb|ADC53566.1| DNA gyrase subunit beta [Acidovorax konjaci]
          Length = 762

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 218/579 (37%), Positives = 318/579 (54%), Gaps = 47/579 (8%)

Query: 62  PGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           PGMYIG T D   LHHL  EV+DN++DE +AG+ + I V++  +  ++VVDNGRGIP   
Sbjct: 1   PGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHSDNSISVVDNGRGIPTGV 60

Query: 121 ---HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN 177
                  P +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV R  
Sbjct: 61  KMDDKHEPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKMLRLTVRRDG 120

Query: 178 TIFSQKFSRG------------IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225
            +   +FS+G            + +SP+    +  +KRGT + F PD +IF +   F   
Sbjct: 121 KVHVLEFSQGFVQNRILETANGVEVSPMRVTGET-DKRGTEVHFLPDTEIFKENHDFHYE 179

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
            L K  +  ++L+  V+     ++   E         F   GG+K ++     N+ ++  
Sbjct: 180 ILAKRLRELSFLNNGVRIRLKDERTGKEDD-------FSGAGGVKGFVDFINANKKVLHP 232

Query: 286 EIFTGKTEKKGTH-------RGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVA 337
             F     +              VE A+ W +   E    + N I   +GGTH +GLR A
Sbjct: 233 TAFHATGTRPADTYGGIPGTEIGVEVAMQWNDGYSEQVLCFTNNIPQRDGGTHLTGLRAA 292

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           +TR I KY E  +   K  + +  DD+      +LSV + EP+F+ QTK KLVS + +  
Sbjct: 293 MTRVIGKYIEQQELAKKAKVEVSGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAP 352

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLA 454
           VE+ +      YL + P +A  L   +IE +  R   R+ RE+ R+   +  + LPGKLA
Sbjct: 353 VEDIVAKTLTDYLEERPNDAKILCGKIIEAARAREAARRAREMTRRKGVLDGMGLPGKLA 412

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  EK+  + +I+
Sbjct: 413 DCQEKDPALSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARYEKLLTSNEIL 472

Query: 515 DLVQALGCRT------------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
            L+ ALG                  +  + LRY ++IIMTDADVDGAHI +LLLTFFY++
Sbjct: 473 TLITALGTGIGKASADGTGKSGADDFNVDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQ 532

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           M +L+E+ H+++  PPL+++  G + +Y  D       L
Sbjct: 533 MPELVERGHIYIAQPPLYKVKNGKEELYLKDGPALDTFL 571


>gi|6939900|dbj|BAA90679.1| DNA gyrase subunit B [Porphyromonas asaccharolytica]
          Length = 553

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 223/560 (39%), Positives = 320/560 (57%), Gaps = 16/560 (2%)

Query: 67  GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           G   EK LHHL  EV+DN++DE +AGY   + V +  +  + V DNGRGIPV+ H K   
Sbjct: 1   GDISEKGLHHLVYEVVDNSIDEALAGYCTEVLVEILSDNSIQVTDNGRGIPVDMHAK-EG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           KS LE+++T LHAGGKFD  +Y++SGGLHGVG+S VNALS+ L   V R   I+ Q++SR
Sbjct: 60  KSALEVVMTVLHAGGKFDKGSYKVSGGLHGVGVSCVNALSESLIAEVHRDGKIYRQEYSR 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G PL+ +E   K  +  GTRITF+PD  IF +   + +  L    +  +YL+  +     
Sbjct: 120 GKPLTGVEVVGKADD-TGTRITFKPDDTIFRETI-YSSETLSHRLRELSYLNAGLHLKLI 177

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   E+   P+   FY   GL  +++     +  +  ++    TEK+G     VE A+
Sbjct: 178 DHRVHDEEGQ-PKSWIFYSENGLSEFVRYVDGAKESLIHDVIHHTTEKQGVP---VEVAL 233

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLM 363
            +       + +Y N I T EGGTH +G R  LTR +KKYA  +    K    I  DD  
Sbjct: 234 TYNTSYQENVYTYVNDIHTIEGGTHLTGFRRGLTRTLKKYATDSHLLDKIKEEISGDDFR 293

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                I+SV + EP+F GQTKTKL + +    V+ A+ +  + YL ++P EA  +++ VI
Sbjct: 294 EGLTAIVSVKVAEPQFEGQTKTKLGNSEIVGVVDAAVSEALEIYLEEHPTEAKLIVDKVI 353

Query: 424 -ERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
                    RR +  V RK+ +    LPGKLADCS       ELFIVEGDSAGG+AKQ R
Sbjct: 354 LAAQARHAARRARELVQRKSPLTGGGLPGKLADCSSKDPSECELFIVEGDSAGGTAKQGR 413

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEK 537
           +   QA+LPLRGKILNV  A   +I +N +I ++  ALG    ++   +      LRY K
Sbjct: 414 DSKYQAILPLRGKILNVEKAMQHRILDNAEIKNIYTALGVTVGTEEDSKALNLSKLRYHK 473

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           +IIMTDADVDGAHIA+L+LTFF++ M  LIE  ++++ +PPL+   +     Y   +E K
Sbjct: 474 IIIMTDADVDGAHIATLILTFFFRNMRPLIENGYVYIANPPLYLCKKDRIEEYCWTDEQK 533

Query: 598 QKILEEFKKHGKGKIEISRF 617
              + ++    + +I+I R+
Sbjct: 534 SDFVTKYGNGQENRIKIQRY 553


>gi|115381160|gb|ABI96229.1| DNA gyrase subunit B [Spiroplasma montanense]
          Length = 552

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 229/567 (40%), Positives = 325/567 (57%), Gaps = 20/567 (3%)

Query: 67  GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           G T++  LHHL  E++DNA+DE +AG+ N I + L     + + DNGRGIP++ HPK  N
Sbjct: 1   GNTNKNGLHHLIWEILDNAVDEALAGFCNEITIILTDENEIIIQDNGRGIPIDIHPK-TN 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           K+TLE I T LHAGGKF+  TY+ISGGLHGVG SVVNALS  +   V R N I+ QKFS 
Sbjct: 60  KTTLETIFTVLHAGGKFNEDTYKISGGLHGVGASVVNALSVYVEALVLRNNKIYHQKFSD 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G   +   K+  V +  GT I F+PDPKIF +   FD   +    +  A+L+  +K    
Sbjct: 120 GGTKATSLKEIGVSDTNGTIIKFKPDPKIFKETINFDFKTIQSKIKQLAFLNKGLKFFLY 179

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
                       +   ++F  G+K Y++     +  I+ +IF    + +       E AI
Sbjct: 180 DQ-------TKDKTTVYFFEDGIKDYIKEINSGKEKINDKIFYISNKYEKI---EAEIAI 229

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
            + +     + S+CN I T EGGTHE G + AL +    Y    +N +    + D++   
Sbjct: 230 QYNDSYDENVFSFCNNIFTSEGGTHEDGFKNALIKSFNNYTNELKNFKGNKFVWDEIKEG 289

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              I+SV   +P + GQTK+KL ++DA+  + N L D F  YL++NP EA K++E ++  
Sbjct: 290 LCAIISVKHNDPLYEGQTKSKLSNVDAKEAILNVLADGFTEYLLKNPNEAKKIIEKILIS 349

Query: 426 SEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
            + R   ++ RE   RK+ +    LPGKLADC    A  +EL++VEGDSAGGSAK  RNR
Sbjct: 350 QKARKAAQRAREDIRRKSTMDNFSLPGKLADCESKNAAESELYLVEGDSAGGSAKTGRNR 409

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
            +QA+L L+GK+LNV      K   N +I  ++ A+G   + ++  E +RY K+IIMTDA
Sbjct: 410 KHQAILSLKGKVLNVEKVKQSKAFENNEIQSIIAAIGTGVKKEFNIEKIRYNKIIIMTDA 469

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-TQGTKSVYAHDEEHKQKILEE 603
           DVDGAHI  LLLTFFY+ M +LI   ++++  PPL++I        YA+ +      LEE
Sbjct: 470 DVDGAHIRVLLLTFFYRYMKELILNGNIYIAQPPLYKIEDDKKNVAYAYSDSE----LEE 525

Query: 604 FKKHG--KGKIEISRFKGLGEMLASQL 628
            KK+     K  I R+KGLGEM   QL
Sbjct: 526 LKKNQFINKKYVIQRYKGLGEMDPIQL 552


>gi|125972826|ref|YP_001036736.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium thermocellum ATCC
           27405]
 gi|256005839|ref|ZP_05430789.1| DNA gyrase subunit B domain protein [Clostridium thermocellum DSM
           2360]
 gi|281417025|ref|ZP_06248045.1| DNA gyrase subunit B domain protein [Clostridium thermocellum JW20]
 gi|125713051|gb|ABN51543.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium thermocellum ATCC
           27405]
 gi|255990203|gb|EEU00335.1| DNA gyrase subunit B domain protein [Clostridium thermocellum DSM
           2360]
 gi|281408427|gb|EFB38685.1| DNA gyrase subunit B domain protein [Clostridium thermocellum JW20]
 gi|316940938|gb|ADU74972.1| DNA gyrase subunit B domain protein [Clostridium thermocellum DSM
           1313]
          Length = 661

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 182/675 (26%), Positives = 324/675 (48%), Gaps = 40/675 (5%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           +   Q+ ++ Y  +SI+ L+G E VR+RP +  G    +   H F E++ N++DE   G+
Sbjct: 2   SKEKQNKAERYGNTSIKSLKGAERVRLRPAVIFGSDGIEGCQHSFFEILSNSIDEAREGF 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST---YEI 150
             +IEV+   +  + V D GRGIP++ + +   +   E++   L+AGGK+ N++   YE 
Sbjct: 62  GKVIEVTRFKDRSIMVKDYGRGIPLD-YNENEKRYNWELVFCELYAGGKYKNNSGENYEF 120

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           S GL+G+G       S+ + VTV R    +   F +G  +  L+K++      GT I +R
Sbjct: 121 SLGLNGLGSCATQYSSEYMDVTVFRDGMRYDLHFEKGENVGGLKKQKWDYESTGTIIKWR 180

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PD ++F D          ++ + +A ++  +K     ++            E+ +  G+ 
Sbjct: 181 PDLEVFTDIN-IPLEYYTEVLRKQAVVNAGLKFILYDEES-------DRVFEYCYENGIV 232

Query: 271 TYLQTKLENRSLISSEIFTGKT-----EKKGTHRGTVEWAIAWCEENPEITSYCNTILTD 325
            Y++    +++    + +   T     E K  ++  ++ A  +  E   +  Y N+   +
Sbjct: 233 DYIKEVSGDKAFTDIQYYETSTRGRDREDKPEYKLKMQIAFCFNNEVNLLEYYHNSSFLE 292

Query: 326 EGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
            GG  +  ++ A    I K+  ++   NK    I   D+  S + + + F     +  QT
Sbjct: 293 YGGAPDKAVKNAFVYVIDKFLKSQGKYNKDESRITFQDIQDSLILVSNSFSTITSYENQT 352

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR---EVNR 440
           K  + +   Q  +   L++  + Y ++N +E TK+LE V+     R    K R   +   
Sbjct: 353 KKSITNKFIQEAMTEFLKEKLEVYFIENKVECTKILEQVLVNKRSRETAEKTRVNIKKKL 412

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
              +       K  DC     +  E++IVEGDSA GS K AR+   QA++P+RGKILN  
Sbjct: 413 SGNVDISNRVKKFVDCRSKDVNKREIYIVEGDSALGSCKLARDAEFQAIIPVRGKILNCL 472

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE---------EDLRYEKVIIMTDADVDGAHI 551
            A  + I  N+ I+DL++ LGC    + +           +LR+ K+II TDADVDG  I
Sbjct: 473 KADYDSIFKNEIIVDLLKVLGCGVEIKSKHNRELSTFDLNNLRWSKIIICTDADVDGYQI 532

Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK 611
            +L+L   Y+ +  LI+   +F+   PLF I    K+ +A+ ++ K +I+ +     KGK
Sbjct: 533 RTLILAMLYRLVPTLIQVGKVFIAESPLFEIRTKDKTYFAYTDKEKNEIVSKL----KGK 588

Query: 612 IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERF 671
             I R KGLGE     + +T M+   R L++V  +     +K T++  +  +G     R 
Sbjct: 589 YTILRSKGLGENDPDMMWQTTMNPETRRLIQVVPDD----IKKTEEFFDLFLGDNLPGRK 644

Query: 672 KFIQERA-SFIDDVG 685
            +I+E    ++D + 
Sbjct: 645 SYIEEHGHKYLDMID 659


>gi|115381164|gb|ABI96231.1| DNA topoisomerase IV subunit B [Entomoplasma melaleucae]
          Length = 553

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 211/570 (37%), Positives = 311/570 (54%), Gaps = 25/570 (4%)

Query: 67  GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           G TD + LHHL  E++DN++DE +AG+A+ I+V L+ NG +TV DNGRG+P   H     
Sbjct: 1   GSTDVRGLHHLVWEIVDNSIDEALAGHASEIDVVLEKNGSVTVTDNGRGVPTGMH--ATG 58

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           KS  E+I + LHAGGKF +  Y+ +GGLHGVG SVVNALS +  VT+ R   I   +F  
Sbjct: 59  KSAAEVIFSILHAGGKFGDGGYKTAGGLHGVGSSVVNALSSKFKVTIYRDKKIHELEFEN 118

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  L     +     K GT + F PDPKIF     F+ + + +  +  A+L+  +K   +
Sbjct: 119 GGKLKTPLIEIGNTYKTGTVVNFLPDPKIFPVT-KFNFSTISERLKESAFLNSNLKITLT 177

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
                       +K E+ F  GL  +++   E  + I+  I    T  K      +++  
Sbjct: 178 D-------AQTEKKIEYIFENGLHEFIKDLTEEFTPITDTIKIEGTNSKIEVEIALKYTE 230

Query: 307 AWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMI 364
              + N  I  + N + T EGG H +G +  L R I  YA+ ++    +   + S+DL  
Sbjct: 231 ---DYNETILGFANNVKTSEGGAHITGFKSGLVRAINDYAKASKILKDKDPRLDSNDLRE 287

Query: 365 SAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
               I++V I E   ++ GQTK+KL +++A+   E+   +  + +L +N I+ATK++E  
Sbjct: 288 GLTAIVTVKIPENLIQYEGQTKSKLGTIEAKGATESTTFNYMNFWLQENKIQATKIIEKA 347

Query: 423 IERSEERLRRRKQREVNRKTAIRKLRLPG---KLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +   + R   RK R+  R    +         KL           EL++VEG+SAGGSAK
Sbjct: 348 LITRKARDEARKARQAVRDAKGKNTSRNKMLGKLTPAQGRKREMNELYLVEGNSAGGSAK 407

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
             R+RS QA+LPLRGK++N   A    +  N++I  ++ A+G    S +  +D  Y KVI
Sbjct: 408 SGRDRSFQAILPLRGKVINSEKAKLVDLMKNEEINTIINAIGAGIGSDFDVKDANYGKVI 467

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQ 598
           IMTDAD DGAHI +LLLTFF++ M +LI  KH+FL  PPL+++T    K  Y  DE    
Sbjct: 468 IMTDADTDGAHIQTLLLTFFFRYMKELILAKHVFLALPPLYKLTYTDKKFQYVWDEIELA 527

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQL 628
            I++E     K K +I R+KGLGEM A QL
Sbjct: 528 NIMKE----SKKKFDIQRYKGLGEMNADQL 553


>gi|114776948|ref|ZP_01451991.1| DNA gyrase, B subunit [Mariprofundus ferrooxydans PV-1]
 gi|114553034|gb|EAU55465.1| DNA gyrase, B subunit [Mariprofundus ferrooxydans PV-1]
          Length = 774

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 208/549 (37%), Positives = 320/549 (58%), Gaps = 18/549 (3%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
           D   LHH+  EV+DNA+DE +AG+ + IEV +  +  +TV DNGRGIPV  H +    S 
Sbjct: 3   DGTGLHHMVFEVVDNAIDEALAGHCDKIEVIIHSDDSVTVRDNGRGIPVGMHDE-EQCSA 61

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            ++I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+ L + + R+  +  QK+  G+P
Sbjct: 62  AQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSESLELVIRREGHVHYQKYLMGVP 121

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
           + PL+     +   GT + F P  +IF          L    +  ++L+  V      ++
Sbjct: 122 VEPLKVIGDAKG-SGTEVRFLPSLEIFS-HRNMSFDILAARLRELSFLNSGVHIEVLDER 179

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
                     K  F + GG+  +++     R+ + S+  + + ++       VE A+ W 
Sbjct: 180 -------TDHKVVFEYEGGISAFVEHLNRTRAPLHSDCVSMQIDRNDV---GVELAMQWT 229

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISA 366
           +     +  + N I   +GG+H +GLR ALTR +  YA  +    K  +S+  +D     
Sbjct: 230 DSYQENVFCFTNNIPQKDGGSHLAGLRGALTRCVNNYAAASGLLKKHKVSLTGEDCREGL 289

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             +LSV + +P+F+ QTK KLVS + +  VE+ + +    +  +NP EA +++  V E +
Sbjct: 290 TAVLSVKVPDPKFSSQTKEKLVSSEVRPIVESVVNEKLAEWFEENPKEAMRIVGKVAEAA 349

Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
             R   RK R+   RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ R+R 
Sbjct: 350 TAREAARKARDLTRRKGALDISSLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRK 409

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
            QA+LPL+GKILNV  A  +++ ++Q+I  ++ ALG    +  +    LRY KV+IMTDA
Sbjct: 410 AQAILPLKGKILNVEKARFDRMLSSQEIGTMITALGTSIGKDDFDISKLRYHKVVIMTDA 469

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           DVDG+HI +LLLTFFY++M +LIE+ +L++  PPL+R+T+G KS Y  D++   + L E 
Sbjct: 470 DVDGSHILTLLLTFFYRQMPELIERGYLYIAQPPLYRVTRGKKSRYIADDDGLFEFLLEH 529

Query: 605 KKHGKGKIE 613
              GK    
Sbjct: 530 GSDGKEYFS 538



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 592 HDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651
               H  ++    +  G+  + I R+KGLGEM   QL ET MD   R   RV +   +N 
Sbjct: 684 WPITHFDELASIIESEGRKGLGIQRYKGLGEMDPEQLWETTMDPVNRVFKRVMLEDVVN- 742

Query: 652 LKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
                ++ + LMG   + R +FIQ+ A  + ++ 
Sbjct: 743 ---ADETFSTLMGDAVEPRRRFIQDNALKVQNLD 773


>gi|261367451|ref|ZP_05980334.1| DNA gyrase subunit B [Subdoligranulum variabile DSM 15176]
 gi|282570223|gb|EFB75758.1| DNA gyrase subunit B [Subdoligranulum variabile DSM 15176]
          Length = 659

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 174/669 (26%), Positives = 292/669 (43%), Gaps = 36/669 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
                Y   SIR L+G + VR RP +  G    +   H   E+I N++DE   GY N I 
Sbjct: 3   KKQQEYGNDSIRQLKGADRVRKRPAVIFGSDGVEGCAHSIFEIISNSIDEARDGYGNRIN 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF--DNSTYEISGGLHG 156
           V+L  +  + V D GRGIPV+ + K   +   +++   L+AGGK+      Y+ S GL+G
Sbjct: 63  VTLFPDHVVEVEDFGRGIPVD-YNKAEQRWNWDLVFCELYAGGKYAEGGGNYDFSLGLNG 121

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           +G+      S+ +   + R    +   F +G  +  L+K+E    + G+ I ++PD ++F
Sbjct: 122 LGLCATQYASEWMTADIYRDGFHYHLDFQKGENVGGLQKEEYKGRRTGSVIRWKPDTEVF 181

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            D           M + +A ++  V   ++       +        + +  G+  Y    
Sbjct: 182 TD-IAVPPETFQDMLRRQAVVNDGVTLVFTDKSGKDTQKYE-----YLYEHGIADYANEI 235

Query: 277 LENRSLISSEIFTG-----KTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHE 331
           + + +L      +G         +  ++  +  A A+      +  Y N+   + GG+ +
Sbjct: 236 VGDEALTPVHFCSGAAVGRDRADQPDYQVRMNVAFAFSNTVQTLEYYHNSSWLEHGGSPD 295

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
             +R A    I  + +      K   +I   D+    V + S F     +  QTK  + +
Sbjct: 296 RAVRSAFVSQINAWLKSKGLYKKNESAITFSDVQDCLVLVSSSFSTRTSYENQTKKAITN 355

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR---EVNRKTAIRK 446
               + +   L+   + Y +++P EA K  + V+   + R    K R   +      +  
Sbjct: 356 KFVAQAMTEFLKHQLEVYFIEHPDEAEKACKQVLINKQSREHAEKARITIKKTMTQQMDL 415

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
                K  DC    A   EL+IVEGDSA G+ KQ+R+   QA++P+RGKILN   A   +
Sbjct: 416 ANRVQKFVDCRTKDASRRELYIVEGDSAMGAVKQSRDSEFQAIMPIRGKILNCLKADYAR 475

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---------LRYEKVIIMTDADVDGAHIASLLLT 557
           I  +  I DL++ +GC                   LR+ KV+I TDADVDG  I +L+LT
Sbjct: 476 IFKSDIITDLIRVMGCGVELGGSHNKDLASFNLDNLRFNKVVICTDADVDGYQIRTLVLT 535

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
             Y+    LI + ++++   PL+ I    K+ +A+ E  K  IL   +     K  I R 
Sbjct: 536 MLYRLTPTLINKGYVYIAESPLYEINTKNKTYFAYTEPEKADILRRIEGE---KYTIQRS 592

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           KGLGE     +  T M    R L++V         + T    + L+G     R + I E 
Sbjct: 593 KGLGENDPEMMWLTTMSPESRRLIKV----LPTDAERTAQVFDLLLGDNLQGRKEHIAEH 648

Query: 678 -ASFIDDVG 685
            A ++DD+ 
Sbjct: 649 GAEYLDDLD 657


>gi|115381162|gb|ABI96230.1| DNA topoisomerase IV subunit B [Spiroplasma melliferum KC3]
          Length = 554

 Score =  440 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 214/572 (37%), Positives = 305/572 (53%), Gaps = 28/572 (4%)

Query: 67  GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           G TD + LHHL  E+IDN++DE +AGY N I++ +  N  + V DNGRG+P   H     
Sbjct: 1   GSTDVRGLHHLVWEIIDNSIDEALAGYCNEIDIIIYKNNAIMVADNGRGVPTGIH--SSG 58

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           KST E+I + LHAGGKF    Y+ +GGLHGVG SVVNALS    VT+ R + ++S KF+ 
Sbjct: 59  KSTPEVIFSVLHAGGKFGGDGYKTAGGLHGVGSSVVNALSATFDVTIYRDHKVWSIKFAN 118

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  +     K     K GT +TF PD KIF     F  + + +  +  A+L+  VK   +
Sbjct: 119 GGQVKEPLTKIGTTTKTGTTVTFLPDHKIFKVI-DFSFSTISERIRESAFLNSGVKLTLT 177

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +         +K  + F  GL+ ++    E++  I+  I     EK+      ++++ 
Sbjct: 178 DQR-------TDKKVSYLFNNGLEEFITYMNEDKKSITPIIMLKGVEKQIEVEIALQYST 230

Query: 307 AWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMI 364
              E N  + S+ N + T EGG+H  G R  LT+ I  YA       ++  ++ S D   
Sbjct: 231 ---EFNENLLSFANNVKTSEGGSHVVGFRTGLTKVINDYARKEGLLKEKDKNLDSVDTRE 287

Query: 365 SAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
               I+SV I E   ++ GQTK KL + +A+  VE  +   F  +L +N   A  ++E  
Sbjct: 288 GLTAIVSVKIPENLIQYEGQTKGKLGTYEARVAVETIVAKQFGFWLTENKTNAYTIIEKA 347

Query: 423 IERS----EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
           +       E R  R   R   ++    +L   GKL           E+F+VEGDSAGGSA
Sbjct: 348 LLARNVCEEARKAREAARNSKKRGNSDRLLT-GKLTPAQNRNKFNNEIFLVEGDSAGGSA 406

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538
           K  R+R  QA+LPLRGK++N   A  + + NN++I  ++ A+G    + +   D  Y KV
Sbjct: 407 KLGRDRRFQAILPLRGKVINAEKAKLQDLMNNEEINVMINAIGAGVGNGFDINDANYGKV 466

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI--TQGTKSVYAHDEEH 596
           IIMTDAD DGAHI +LLLTFFY+ M  LIE   ++L  PPLF+I  T+     YA DE  
Sbjct: 467 IIMTDADTDGAHIQTLLLTFFYRYMRPLIENHRVYLALPPLFKITSTKNKHIEYAWDETE 526

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
            +  L +F     GK E+ R+KGLGEM A QL
Sbjct: 527 LKNKLSQFH----GKFELQRYKGLGEMNAEQL 554


>gi|163790377|ref|ZP_02184808.1| DNA topoisomerase IV subunit B [Carnobacterium sp. AT7]
 gi|159874281|gb|EDP68354.1| DNA topoisomerase IV subunit B [Carnobacterium sp. AT7]
          Length = 587

 Score =  440 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 194/579 (33%), Positives = 305/579 (52%), Gaps = 35/579 (6%)

Query: 115 GIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA 174
           G+P   H       T+++I T LHAGGKF    Y+ SGGLHGVG SVVNALS+ L VT+ 
Sbjct: 1   GMPTGMH--SSGIPTVQVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSEWLTVTII 58

Query: 175 RQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
           R    + QKF   G     L+K +    K GT + F+PD  IF          L +  + 
Sbjct: 59  RDGVHYQQKFVDGGKAKGSLKKIKTSNEKNGTIVHFKPDATIFTTVN-LSYDVLAERLRE 117

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            A+L   ++     ++         + E FY+  G+K ++    E++  ++      + E
Sbjct: 118 SAFLLKGLRISLVDER-------NDQAEVFYYEEGIKEFVSYLNEDKDHLTPVA-YFEGE 169

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQ 350
                   VE+A  + +     I S+ N + T +GGTHE+G++ A+T+    YA      
Sbjct: 170 NNEI---EVEFAFQYNDGYSETILSFVNNVRTKDGGTHEAGMKTAITKTFNDYARKVSLL 226

Query: 351 NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
            ++  ++   D       ++S+ I E   +F GQTK+KL +  A+  VE  + +   +YL
Sbjct: 227 KEKDKNLEGTDFREGLAAVISIRIPENLLQFEGQTKSKLGTPQARSAVETVVSEQLSYYL 286

Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGKLADCSQNIAHGTE 465
           ++N   + +L+   ++  E R   RK RE +R    RK       GKL       A   E
Sbjct: 287 IENGDLSQQLIRKALKAREARDAARKAREESRNGKKRKKNDTLLSGKLTPAQSKNAKRNE 346

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
           L++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  +++  N++I  ++  +G    
Sbjct: 347 LYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKLQEVMKNEEISTMIYTIGAGVG 406

Query: 526 SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ- 584
            ++   D  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L E   ++L  PPL+++++ 
Sbjct: 407 PEFDIADCNYDKIIIMTDADTDGAHIQTLLLTFFYRYMKPLFEAGKVYLALPPLYKLSRG 466

Query: 585 -GTKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
            G K    YA  ++   ++ ++F K+      + R+KGLGEM A QL +T M+ + RTL+
Sbjct: 467 IGKKEKIAYAWTDDELVQVTKDFGKN----YILQRYKGLGEMNADQLWDTTMNPDTRTLI 522

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           RV+I+         +  ++ LMG K + R ++I+    F
Sbjct: 523 RVKIDD----AAQAEKRVSVLMGDKVEPRRRWIESHVEF 557


>gi|254507508|ref|ZP_05119642.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus 16]
 gi|219549578|gb|EED26569.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus 16]
          Length = 553

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 211/570 (37%), Positives = 310/570 (54%), Gaps = 21/570 (3%)

Query: 116 IPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR 175
           +PV+ HP+    S +E+I+T LHAGGKF N  Y+ SGGLHGVGISVVNALS  + VTV R
Sbjct: 1   MPVDIHPE-KGISGVELIMTKLHAGGKFSNDNYKFSGGLHGVGISVVNALSKRVEVTVKR 59

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           Q  +    F  G  ++ L       +   GT + F PD K F     F A RL+   ++K
Sbjct: 60  QGQVHEIAFEHGNAVTELTVTGTCGHRNTGTSVHFWPDAKYFDSY-KFSALRLVNNLRAK 118

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           A L   ++  +S      E        ++Y+  GLK YL   ++   ++ +E + G+   
Sbjct: 119 AVLCPGLEITFSDKVNDEE-------HKWYYEDGLKDYLAEGVKGYEVLPAEPYIGEFTA 171

Query: 295 KGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KR 353
           +     T               SY N + T +GGTH +GLR  L   ++++ E      R
Sbjct: 172 ETEM-ATWAVIWQPEGGEMITESYVNLVPTKQGGTHVNGLRQGLLDAMREFCEFRNLLPR 230

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
            + +  DD+      +LSV +++P+FAGQTK +L S      V   ++D F  +L + P 
Sbjct: 231 GVKLTGDDIFDRCSYVLSVKMQDPQFAGQTKERLSSRQTAAFVSGVVKDAFSLWLNEKPQ 290

Query: 414 EATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
            A +L E  I  +  R+R    ++V RK       LPGKL DCS    + TE+F VEGDS
Sbjct: 291 LAEQLAEVCIANAHRRMR--ASKKVVRKKVASGPALPGKLTDCSVQDLNRTEIFFVEGDS 348

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAKQAR+R  QAV+PLRGKILN     ++++  +Q++ D+  ALG    +    + L
Sbjct: 349 AGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVALGIDPDNDNL-DGL 407

Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHD 593
           RY K+ I+ DAD DG HIA+LL   F +    L+E  H+++  PPL+RI  G +  YA D
Sbjct: 408 RYGKICILADADSDGLHIATLLCALFTRHFRALVEAGHIYVAMPPLYRIDCGKEVFYALD 467

Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
           ++ K+ +LE   K  K KI + RFKGLGEM   QL+ET MD N R L+++ I+ +    +
Sbjct: 468 DDEKEGVLERLSKK-KAKINVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDN----E 522

Query: 654 DTQDSINKLMGTK-ADERFKFIQERASFID 682
            T + ++ L+G K AD+R  ++Q      +
Sbjct: 523 QTMEMMDMLLGKKRADDRRSWLQTNGDMAE 552


>gi|115381168|gb|ABI96233.1| DNA topoisomerase IV subunit B [Entomoplasma ellychniae]
          Length = 552

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 214/569 (37%), Positives = 305/569 (53%), Gaps = 24/569 (4%)

Query: 67  GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           G TD + LHHL  E++DN++DE +AGY N I V L+ NG +TV DNGRG+P   H     
Sbjct: 1   GSTDTRGLHHLVWEIVDNSIDEALAGYCNEINVVLEKNGSVTVSDNGRGVPTGMH--ATG 58

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           KST E+I + LHAGGKF  S Y+ SGGLHGVG SVVNALS +  VT+ R   +   +F  
Sbjct: 59  KSTPEVIFSILHAGGKFGGSGYKTSGGLHGVGSSVVNALSKKFKVTIYRDKQVHEIEFGN 118

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  L     +     K GT + F PD  IF     +  + + +  +  A L+  +K    
Sbjct: 119 GGKLVQPLTQVSTTYKTGTMVNFLPDDSIFNTT-KYSFSVISERLKESALLNSGLKITLE 177

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
                       +  E+ F  GL  +++      + I+  I      K+      +++  
Sbjct: 178 DK-------INSKSVEYQFENGLIEFVKELSSEFTPITEPITIKNAAKRIESEICLQYTE 230

Query: 307 AWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMI 364
              + N  I  + N + T +GGTH +G ++ L R I  YA+  +    +   + S+DL  
Sbjct: 231 ---DFNETILGFANNVKTGDGGTHITGFKIGLVRAINDYAKNNKILKDKDARLDSNDLRE 287

Query: 365 SAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
             V I++V I E   E+ GQTK KL + DA+  VE  + D  + +L++N + ATK++E  
Sbjct: 288 GLVAIVTVKIPEDLIEYEGQTKAKLGTPDAKNAVEQVVYDFMNFWLIENKVAATKIIEKA 347

Query: 423 IERSEERLRRRKQREVNRKTAIRKLRLPG--KLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
           I   + R   RK R+  R +  +K       KL           EL++VEGDSAGGSAK 
Sbjct: 348 ILARKARDEARKARQAVRDSKGKKTSRTMLGKLTPAQGRKKEINELYLVEGDSAGGSAKS 407

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            R+R  QA+LPLRGK++N   A   ++  N++I  ++ A+G      +   D+ Y KVII
Sbjct: 408 GRDRVFQAILPLRGKVINSEKAKLNELLKNEEIQTIIAAIGAGIGQDFDVSDINYGKVII 467

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQK 599
           MTDAD DGAHI +LLLTFFY+ M DLI  KH+F+  PPL+++T    K +Y  DE     
Sbjct: 468 MTDADTDGAHIQTLLLTFFYRYMKDLITNKHIFIALPPLYKVTFADKKFIYLWDEIE--- 524

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQL 628
            L +F K    K E+ R+KGLGEM A QL
Sbjct: 525 -LNDFNKVNSKKFELQRYKGLGEMNADQL 552


>gi|19909557|dbj|BAB86974.1| DNA gyrase subunit B [Synechococcus elongatus PCC 6301]
          Length = 545

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 218/549 (39%), Positives = 319/549 (58%), Gaps = 8/549 (1%)

Query: 81  VIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140
           V+DNA+D+ +AGY N I+V L  +G   V DNGRGIP + HP+   KS LE +LT LHAG
Sbjct: 1   VVDNAVDKALAGYCNTIDVRLLKDGSCQVTDNGRGIPTDIHPQ-TGKSALETVLTILHAG 59

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKF    Y++SGGLHGVG+SVVNALS+ + VTV R+     Q+F +G P+  L+      
Sbjct: 60  GKFGGGGYKVSGGLHGVGVSVVNALSEYVEVTVWREGKTHQQRFEQGNPIGELQVAPDAD 119

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
           ++RGT++ F+PD  IF +   FD   L    +  AYL+  V+  ++ ++    K   P +
Sbjct: 120 DRRGTQVRFKPDATIFSETTEFDYGTLASRLKELAYLNAGVRIDFTDERLQLTKNHEPHQ 179

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCN 320
           E +YF GG++ Y+     ++  + SEI   ++EK G  +            +  I  + N
Sbjct: 180 ETYYFEGGIREYVAYMNTDKQALHSEIIFVQSEKDGV-QVEAALQWCVDAYSDNILGFAN 238

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPE 378
            I T +GGTH  GL+  LTR +   A     ++    ++  +++      I+SV + +PE
Sbjct: 239 NIRTIDGGTHIEGLKTVLTRTMNTIARKRNKRKDADNNLSGENIREGLTAIVSVKVPDPE 298

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE- 437
           F GQTKTKL + + +  V+  + +    YL  +P  A  +LE  I+        R+ RE 
Sbjct: 299 FEGQTKTKLGNTEVRGIVDTLVGETLTEYLEFHPSVADLILEKAIQAFNAAEAARRAREL 358

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
           V RK+ +    LPGKLADCS      +E+FIVEGDSAGGSAKQ R+R  QA+LPLRGKIL
Sbjct: 359 VRRKSVLESSTLPGKLADCSSRDPGESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKIL 418

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLL 556
           N+      KI  N +I  L+ ALG   + +  +   LRY +++IMTDADVDGAHI +LLL
Sbjct: 419 NIEKTDDAKIYKNTEIQALITALGLGIKGEEFDASQLRYHRIVIMTDADVDGAHIRTLLL 478

Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616
           TFFY+    L+EQ ++++  PPL+++ +G    Y ++E   Q+ +  F ++      I R
Sbjct: 479 TFFYRYQRSLLEQGYMYIACPPLYKLERGRNHYYCYNERELQERIATFPENAN--YTIQR 536

Query: 617 FKGLGEMLA 625
           FKGLGEM+ 
Sbjct: 537 FKGLGEMMP 545


>gi|29293589|gb|AAO67726.1| DNA gyrase subunit B [Mesoplasma photuris]
          Length = 549

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 207/566 (36%), Positives = 308/566 (54%), Gaps = 24/566 (4%)

Query: 65  YIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKF 124
           YIG TD + LHHL  E++DN++DE +AGYA  I V+L+ NG +TV DNGRG+P   H   
Sbjct: 1   YIGSTDVRGLHHLVWEIVDNSIDEALAGYATEINVTLEKNGSVTVADNGRGVPTGMH--A 58

Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184
             + T E+I + LHAGGKF  S Y+ SGGLHGVG SVVNALS +  VT+ R        F
Sbjct: 59  TGRPTPEVIFSVLHAGGKFGGSGYKTSGGLHGVGSSVVNALSKKFQVTINRDKQTHQISF 118

Query: 185 SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244
             G  L     +    N+ GT + F PD  IF     F+ + + +  +  A L+  +K  
Sbjct: 119 KNGGNLDQPLTQTGNTNRTGTIVNFLPDDGIFTTT-KFNFSTISERLKESALLNSGLKIT 177

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
              +          +  E+ F  GL+ +++   E+ + I+  I      K+      +++
Sbjct: 178 LKDE-------TTDKHVEYQFENGLEEFVKELCEDMTKITDIITIKGENKRIEGEIALQY 230

Query: 305 AIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDL 362
                + N  +  + N + T +GGTH +G +  L + I  YA+  +    +   + S+DL
Sbjct: 231 TE---DYNETVLGFANNVKTGDGGTHITGFKTGLVKAINDYAKANKILKDKDPRLDSNDL 287

Query: 363 MISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
               V I++V I E   E+ GQTK KL + DA+  VE    +  + +L +N   ATK++E
Sbjct: 288 REGLVAIVTVKIPEDLIEYEGQTKGKLGTPDAKSAVEQITYNFMNFWLTENKAPATKIIE 347

Query: 421 WVIERSEERLRRRKQREVNRKTAIRKLRLPG--KLADCSQNIAHGTELFIVEGDSAGGSA 478
             +     R   RK R+V R +  +K       KL           EL++VEGDSAGGSA
Sbjct: 348 KALLARRAREEARKARQVIRDSKGKKQNRTMLGKLTPAQGRKKEINELYLVEGDSAGGSA 407

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538
           K  R+R+ QA+LPLRGK++N   A    +  N++I+ ++ A+G    S++   ++ Y KV
Sbjct: 408 KSGRDRTFQAILPLRGKVINSEKAKLADLMKNEEILTMITAIGAGIGSEFDISEINYGKV 467

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHK 597
           IIMTDAD DGAHI +LLLTFF++ M DLI  KH+F+  PPL+++    +S  Y  DE+  
Sbjct: 468 IIMTDADTDGAHIQTLLLTFFFRYMKDLITNKHIFIALPPLYKLIFSDRSFIYLWDEDE- 526

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEM 623
              L ++ K+   + EI R+KGLGEM
Sbjct: 527 ---LAQYSKNSTKRFEIQRYKGLGEM 549


>gi|225017579|ref|ZP_03706771.1| hypothetical protein CLOSTMETH_01507 [Clostridium methylpentosum
           DSM 5476]
 gi|224949639|gb|EEG30848.1| hypothetical protein CLOSTMETH_01507 [Clostridium methylpentosum
           DSM 5476]
          Length = 661

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 190/672 (28%), Positives = 308/672 (45%), Gaps = 37/672 (5%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +   + Y   SI  L+G + VR RPG+  G    +   H   E++ N++DE   GY + 
Sbjct: 2   TRKPKNTYGNESISSLKGADRVRKRPGVIFGSDGLEGCEHSVFEILSNSIDEAREGYGDK 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS---TYEISGG 153
           I ++   +  + V D GRGIPV+ +P    +   E++   L+AGGK++ +   +YE S G
Sbjct: 62  IVITRFADHSIEVEDFGRGIPVDYNP-IEERFNWELVFCELYAGGKYNTNNAESYEFSLG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           L+G+G+      S+ + V + R   +++  F  G  +  L K+E  R K GT+I ++PD 
Sbjct: 121 LNGLGLCATQYSSEYMDVEIHRDGFVYTLHFEHGENVGGLMKRENGRKKSGTKIKWKPDL 180

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           ++F D     A     + + +A ++  ++  +    E        E EEF +  G+  Y+
Sbjct: 181 QVFTD-IDIPAEYYHDILKRQAIVNNGLRFEFRNQTE-----NGFETEEFLYEEGITDYV 234

Query: 274 QTKLENRSLISSEIFTGKTE-----KKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGG 328
           +      SL S + +  +        K  +R  +  A+ +         Y N+   + GG
Sbjct: 235 KEIAGEESLTSVQSWQAERTGRDRADKPDYRVKLGVALTFSNRVKLTEYYHNSSWLEHGG 294

Query: 329 THESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           + E  ++ A+   I  Y +      K    +   D+    V + S F  +  +  QTK  
Sbjct: 295 SPERAVKQAMVSQIDAYLKQNGKYLKNESKVSFADIEDCLVLVSSSFSTQTSYENQTKKS 354

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR---EVNRKTA 443
           + +      +   L+   + Y ++NPIEA K+ E V+     R +  K R   +     +
Sbjct: 355 ITNKFIYEAMTEFLKHQLEVYFIENPIEAGKIAEQVLINKRSREKAEKTRLNLKKTLSGS 414

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +       K  DC        E+FIVEGDSA GS K  R+   QA++P+RGKILN   AG
Sbjct: 415 VDLANRVQKFVDCRTKDLSRREIFIVEGDSALGSCKLGRDAEFQAIIPVRGKILNCLKAG 474

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREED---------LRYEKVIIMTDADVDGAHIASL 554
            +KI  N  I D+++ LGC    + +            LR+ KVII TDADVDG  I +L
Sbjct: 475 YDKIFKNDIISDIIKVLGCGVEVKSKANKDLSSFDLNGLRWNKVIICTDADVDGFQIRTL 534

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LT  Y+    LI++ ++++   PLF IT   K  +A+ E  K  IL      G  K  +
Sbjct: 535 ILTMLYRLTPTLIDEGYVYIAQTPLFEITTKKKVYFAYSESEKTHILSML---GDEKFTL 591

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
            R KGLGE     +  T M  + R L++V         + T    + ++G     R  FI
Sbjct: 592 QRSKGLGENEPDMMWLTTMCPDTRRLVKVT----RAEAEATSAMFDLMLGDNLQGRKDFI 647

Query: 675 QE-RASFIDDVG 685
            E  A +ID   
Sbjct: 648 SEFGADYIDQAD 659


>gi|288561862|gb|ADC53567.1| DNA gyrase subunit beta [Acidovorax avenae]
          Length = 762

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 217/579 (37%), Positives = 319/579 (55%), Gaps = 47/579 (8%)

Query: 62  PGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           PGMYIG T D   LHHL  EV+DN++DE +AG+ + I V++  +  ++VVDNGRGIP   
Sbjct: 1   PGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHSDNSISVVDNGRGIPTGV 60

Query: 121 ---HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN 177
                  P +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV R  
Sbjct: 61  KMDDKHEPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKMLRLTVRRDG 120

Query: 178 TIFSQKFSRG------------IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225
            +   +FS+G            + +SP+    +  +KRGT + F PD +IF +   F   
Sbjct: 121 KVHLLEFSQGFVQNRILETVNGVEVSPMRVTGET-DKRGTEVHFLPDTEIFKENNDFHYE 179

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
            L K  +  ++L+  V+     ++   E         F   GG+  ++Q    ++ ++  
Sbjct: 180 ILAKRLRELSFLNNGVRIRLKDERTGKEDD-------FSGAGGVMGFVQFINASKKVLHP 232

Query: 286 EIFTGKTEKKGTH-------RGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVA 337
             F     +              VE A+ W +  N  +  + N I   +GGTH +GLR A
Sbjct: 233 NAFHATGSRPAETYGGIPGTEIGVEVAMQWNDGFNESVLCFTNNIPQRDGGTHLTGLRAA 292

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           +TR I KY E  +   K  + +  DD+      +LSV + EP+F+ QTK KLVS + +  
Sbjct: 293 MTRVIGKYIEQNEMAKKAKVEVSGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAP 352

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLA 454
           VE+ +      YL + P +A  L   ++E +  R   RK RE+ R+   +  + LPGKLA
Sbjct: 353 VEDIVAKALTDYLEERPNDAKILCGKIVEAARAREAARKAREMTRRKGVLDGMGLPGKLA 412

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  EK+  + +I+
Sbjct: 413 DCQEKDPAMSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARYEKLLTSNEIL 472

Query: 515 DLVQALGCRT------------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
            L+ ALG                  +  + LRY ++IIMTDADVDGAHI +LLLTFFY++
Sbjct: 473 TLITALGTGIGKASADGTGKSGADDFNVDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQ 532

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           M +L+E+ H+++  PPL+++  G + +Y  D       L
Sbjct: 533 MPELVERGHIYIAQPPLYKVKNGKEELYLKDGPALDTFL 571


>gi|325108906|ref|YP_004269974.1| DNA gyrase subunit B [Planctomyces brasiliensis DSM 5305]
 gi|324969174|gb|ADY59952.1| DNA gyrase subunit B [Planctomyces brasiliensis DSM 5305]
          Length = 826

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 208/567 (36%), Positives = 311/567 (54%), Gaps = 18/567 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
                   +YD + IR LEG+E +R+RP MYIGGTD   LHHL  E+ DN +DE +   A
Sbjct: 1   MDENKPQGSYDHTKIRALEGIEGIRLRPAMYIGGTDSVGLHHLVFELTDNVLDEYVNNNA 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD-NSTYEI-SG 152
            ++ V ++ +G ++V D+GRGIPV       NKS LE++ T +HAGGKFD    Y   +G
Sbjct: 61  AMMTVKINADGSVSVTDDGRGIPVGEMEGQENKSALEVVFTKIHAGGKFDREGGYATGTG 120

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVGI+ VNA S+ L   V R+  +++ +FS+G   S L K      + GT++TF PD
Sbjct: 121 GLHGVGITAVNACSEWLEAEVRREGHVWTMEFSKGAVTSGLTKLG-TTEQTGTKVTFMPD 179

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P IF D   F    L K  Q  A+L+  ++     ++         + ++F++  GL  +
Sbjct: 180 PTIFPD-TTFSYEVLRKRLQDAAFLNAGIRIRLVDERS-------GQTDDFFYEDGLVEF 231

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++      + +  E+     +   T    VE A+ + +     I  Y N I   EGG+H 
Sbjct: 232 VKHLNRTETALHPEVIRINGQSDET---VVEIAMQYNDGYSENIRCYANGIYNPEGGSHL 288

Query: 332 SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           SG R ALTR +  Y +     + + +  +D       +++V I  P+F  QTK KL + +
Sbjct: 289 SGFRGALTRTLNNYGKKENLFKDVQLSGEDFREGLAAVITVRIPNPQFESQTKIKLTNAE 348

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLP 450
               V + + +  + Y+ +NP  A K+L+  I  +E R   RKQRE+  RK A+    LP
Sbjct: 349 VDGAVASIVSEQLNKYMEENPQLAKKILQKGILAAEAREAARKQREMVRRKGALTTGGLP 408

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
            KL DC       TE++ VEGDSAGGSA   R+ + QA+LPLRGKILNV  A   K+ +N
Sbjct: 409 EKLRDCRSRELDITEIYFVEGDSAGGSADTGRDSNTQAILPLRGKILNVEKAQLVKVLDN 468

Query: 511 QQIMDLVQALGCRTRSQ-YREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
            +I  + +A+G    ++       RY K+I+MTDADVDG+HI +LLLTF ++ M  L++ 
Sbjct: 469 AEISAMFKAIGIPPGAELEDIRKRRYGKIILMTDADVDGSHIRTLLLTFLFRHMRPLVQA 528

Query: 570 KHLFLISPPLFRIT-QGTKSVYAHDEE 595
             +++  PPL+R+T +  KS Y    E
Sbjct: 529 GCVYVAQPPLYRVTQRNKKSRYVQTHE 555



 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 5/106 (4%)

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           F +    K +      +  +IL +  +       I+RFKGLGEM A +L  T MD   R+
Sbjct: 725 FVVQTEKKEIPLSSLRNLLQILRKVGEDSIQG-TITRFKGLGEMDAEELWLTTMDPEARS 783

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           LL+V +           +    LMG   + R +FI++ A  + ++ 
Sbjct: 784 LLQVTMED----AAAADEIFRILMGDHVEPRREFIEKHALDVKELD 825


>gi|71725925|gb|AAZ39080.1| gyrase subunit B [Exiguobacterium acetylicum]
          Length = 513

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 212/523 (40%), Positives = 303/523 (57%), Gaps = 14/523 (2%)

Query: 60  MRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119
            RPGMYIG T  K LHHL  E++DN++DE +AGY + I+V+++    + V DNGRGIPV+
Sbjct: 1   KRPGMYIGSTASKGLHHLVWEIVDNSIDEALAGYCDTIKVTIEPGNSILVEDNGRGIPVD 60

Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179
              K   +  +E+ILT LHAGGKF    Y++SGGLHGVG SVVNALS +L V V R   +
Sbjct: 61  IQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTKLEVFVKRNEKL 119

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
           + Q + RG+P   LE       + GT I F PD +IF +   +D   L    +  A+L+ 
Sbjct: 120 YYQAYHRGVPAQDLEVIG-TSEETGTTIRFFPDGEIFQETLEYDYDLLATRLRELAFLNK 178

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            +K   + D+             F++ GG+K+Y++    ++ ++ +E       K G   
Sbjct: 179 GLKIIITDDR-----ADESMTRSFHYEGGIKSYVEHLNRSKEVVHAEPVYVHGTKDGI-- 231

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS-- 356
             VE A+ + +     I S+ N I T EGGTHE+G + ALTR I  YA+     +     
Sbjct: 232 -EVEVALQYNDGFASNIYSFTNNIPTHEGGTHETGFKTALTRVINDYAKKFGLMKDADGT 290

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           +  +D+      I+SV    P+F GQTKTKL + DA+   ++     F+ ++++NP  A 
Sbjct: 291 LSGEDVREGMTAIVSVKHPNPQFEGQTKTKLGNSDARTVTDSLFSGAFEQFMLENPTNAR 350

Query: 417 KLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            ++E  ++        +R +    RK  +    LPGKLADCS   A  +EL+IVEGDSAG
Sbjct: 351 AIVEKGMMASRARMAAKRARELTRRKGVLEVSSLPGKLADCSSRDASISELYIVEGDSAG 410

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           GSAK  R+R  QA+LP+RGKILNV  A  +KI  + +I  ++ ALG    S++  E  RY
Sbjct: 411 GSAKSGRDRHFQAILPIRGKILNVEKARLDKILGSNEIRTIITALGTSIGSEFDIEKARY 470

Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
            KVIIMTDADVDGAHI +LLLTFFY+ M  L+E  ++++  PP
Sbjct: 471 HKVIIMTDADVDGAHIRTLLLTFFYRYMRPLVEHGYVYIAQPP 513


>gi|3695371|gb|AAC62775.1| DNA gyrase subunit B [Campylobacter jejuni]
          Length = 685

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 230/633 (36%), Positives = 339/633 (53%), Gaps = 50/633 (7%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T+   LHH+  EV+DN++DE +AG+ + I+V +   G   V DNGRGIPV+ HP   N  
Sbjct: 1   TNIGGLHHMIYEVVDNSIDEAMAGHCDTIDVEITTEGSCIVSDNGRGIPVDMHP-TENMP 59

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
           TL ++LT LHAGGKFD  TY++SGGLHGVG+SVVNALS +L  TV R   I+ Q+FS G 
Sbjct: 60  TLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGK 119

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
            +S      K +   GT I F PD +IF     FD   L K  +  AYL+ ++   +  +
Sbjct: 120 VISEFGVIGKSKK-TGTTIEFWPDDQIFEVT-EFDYEILAKRFRELAYLNPKITINFKDN 177

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +       + + E F+F GG+  ++    +  +L  +  F+   E        VE A+ +
Sbjct: 178 R-------VGKHESFHFKGGISQFVIDLNKKEALTKAIFFSVDEED-----VNVEVALLY 225

Query: 309 CEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
            +   E   S+ N I T +GGTHE+G R+ LTR I  Y E      ++   I  +D+   
Sbjct: 226 NDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGEDVREG 285

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
            + ++SV + EP+F GQTK KL S   +  V  A  +    Y  +NPIEA  ++   +  
Sbjct: 286 LIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMA 345

Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           +  R   +K RE   +K ++    LPGKLADC       +E+++VEGDSAGGSAKQ R R
Sbjct: 346 ARGREAAKKARELTRKKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRER 405

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
           S QA+LPLRGKILNV  A  +KI  ++QI +++ A GC     +    LRY K+IIMTDA
Sbjct: 406 SFQAILPLRGKILNVEKARLDKILKSEQIPNMITAFGCGIGEDFDLSKLRYHKIIIMTDA 465

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           DVDG+HI +LLLTFF++ M +L+   H++L  PPL+   +  K +Y  DE+   + L E 
Sbjct: 466 DVDGSHIQTLLLTFFFRFMNELVANGHIYLAQPPLYLYKKAKKQIYLKDEKALSEYLIET 525

Query: 605 KKHGKGKIEISRFKGLGEMLASQLKET----------AMDANKR----TLLRVEINKDLN 650
              G        ++G+G M    LK+             D  KR    +++R  I     
Sbjct: 526 GIEGLN------YEGIG-MND--LKDYLKIVAAYRAILKDLEKRFNVISVIRYMIENSNL 576

Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
              + ++  + +         +F++ +   I +
Sbjct: 577 VKGNNEELFSVI--------KQFLETQGHNILN 601



 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           ++   ++LE+ + + K    I R+KGLGEM   Q
Sbjct: 652 DKDILEVLEDVETNAKKGATIQRYKGLGEMNPEQ 685


>gi|282761891|gb|ADA84546.1| DNA gyrase subunit beta [Acidovorax citrulli]
          Length = 762

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 217/579 (37%), Positives = 318/579 (54%), Gaps = 47/579 (8%)

Query: 62  PGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           PGMYIG T D   LHHL  EV+DN++DE +AG+ + I V++  +  ++VVDNGRGIP   
Sbjct: 1   PGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHSDNSISVVDNGRGIPTGV 60

Query: 121 ---HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN 177
                  P +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV R  
Sbjct: 61  KMDDKHEPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKMLRLTVRRDG 120

Query: 178 TIFSQKFSRG------------IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225
            +   +FS+G            + +SP+    +  +KRGT + F PD +IF +   F   
Sbjct: 121 KVHLLEFSQGFVQNRILETVNGVEVSPMRVTGET-DKRGTEVHFLPDTEIFKENNDFHYE 179

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
            L K  +  ++L+  V+     ++   E         F   GG+  ++Q    ++ ++  
Sbjct: 180 ILAKRLRELSFLNNGVRIRLKDERTGKEDD-------FSGAGGVMGFVQFINASKKVLHP 232

Query: 286 EIFTGKTEKKGTH-------RGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVA 337
             F     +              VE A+ W +  N  +  + N I   +GGTH +GLR A
Sbjct: 233 NAFHATGSRPAETYGGIPGTEIGVEVAMQWNDGFNESVLCFTNNIPQRDGGTHLTGLRAA 292

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           +TR I KY E  +   K  + +  DD+      +LSV + EP+F+ QTK KLVS + +  
Sbjct: 293 MTRVIGKYIEQNELAKKAKVEVSGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAP 352

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLA 454
           VE+ +      YL + P +A  L   ++E +  R   RK RE+ R+   +  + LPGKLA
Sbjct: 353 VEDIVAKALTDYLEERPNDAKILCGKIVEAARAREAARKAREMTRRKGVLDGMGLPGKLA 412

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  EK+  + +I 
Sbjct: 413 DCQEKDPALSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARYEKLLTSNEIF 472

Query: 515 DLVQALGCRT------------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
            L+ ALG                  +  + LRY ++IIMTDADVDGAHI +LLLTFFY++
Sbjct: 473 TLITALGTGIGKASADGTGKGGADDFNVDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQ 532

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           M +L+E+ H+++  PPL+++  G + +Y  D       L
Sbjct: 533 MPELVERGHIYIAQPPLYKVKNGKEELYLKDGPALDTFL 571


>gi|94983853|gb|ABF50631.1| DNA topoisomerase IV subunit B [Spiroplasma turonicum]
          Length = 554

 Score =  438 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 199/571 (34%), Positives = 297/571 (52%), Gaps = 26/571 (4%)

Query: 67  GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           G TD + LHHL  E++DN++DE +AG  + I VS++ +G +T+ DNGRG+P+ N+ K   
Sbjct: 1   GSTDVRGLHHLVWEIVDNSIDESLAGACSEINVSIEKDGSVTIKDNGRGVPIGNY-KGTK 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           +ST EII + LHAGGKF    Y+ SGGLHGVG SVVNALS +  VT+ R N I + KF+ 
Sbjct: 60  QSTPEIIFSVLHAGGKFGGDGYKTSGGLHGVGSSVVNALSSKFKVTIYRDNKISTIKFAN 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  L+   K+     + GT + F PD  IF     F  + + +  +  A L+  +K    
Sbjct: 120 GGKLTQPLKEIGTSKQTGTIVNFLPDETIFSTV-KFSFSTISERLKESALLNSGLKITLK 178

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
            ++         +  E+ +  GL  ++     ++  I S I      K       VE A+
Sbjct: 179 DNRS-------DKYVEYLYEDGLLEFVNELKGSQKEIISPIII----KGNNSNIDVEIAM 227

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            +  E    +  + N + T EGGTH  G R  L + +  Y        +R   + + D+ 
Sbjct: 228 TYTNEFSETVLGFANNVKTSEGGTHVIGFRSGLVKALNDYGRSQNILKERDKKLDASDVK 287

Query: 364 ISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
              + +++V I E   ++ GQTK KL + +A+   +         +L +N   A  L+E 
Sbjct: 288 EGLIAVVTVKIPENLIQYEGQTKGKLGTAEARTVCDQITETSVSFWLQENKTLAISLIEK 347

Query: 422 VIERSEERLRRRKQREVNRKTAIRKLRLPG--KLADCSQNIAHGTELFIVEGDSAGGSAK 479
            +     +   RK R+  R    +        KL           ELF+VEGDSAGGSAK
Sbjct: 348 ALLARRAKEEARKARQAVRDQKNKSKSRTMLGKLTPAQGKDKEQNELFLVEGDSAGGSAK 407

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
             R+R  QA+LPL+GK++N        +  N++I+ ++ A+G    S++   D+ Y K+I
Sbjct: 408 SGRDRRFQAILPLKGKVINAEKTKLIDLLKNEEIVTIMNAIGAGVGSEFDVSDINYGKII 467

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT--QGTKSVYAHDEEHK 597
           IMTDAD DGAHI +LLLTFFY+ M DLI  K +++  PPLF++T        Y   E+  
Sbjct: 468 IMTDADTDGAHIQTLLLTFFYRYMKDLILNKKVYIALPPLFKVTSPNKKDFKYLWTEDEL 527

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
              +    K+ K K EI R+KGLGEM A+QL
Sbjct: 528 VSHM----KNTKQKYEIQRYKGLGEMNATQL 554


>gi|291543196|emb|CBL16305.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Ruminococcus sp. 18P13]
          Length = 660

 Score =  438 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 180/666 (27%), Positives = 304/666 (45%), Gaps = 35/666 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
               +Y   SI +L+G + VR RPG+  G        H   EVI N++DE  AG+ + I 
Sbjct: 3   KKQADYGNESITMLKGADKVRKRPGVIFGSDGLDGCEHSVFEVISNSIDEARAGFGDHII 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD--NSTYEISGGLHG 156
           V+   +  + V D GRG PV+ +     +   E++   L+AGGK+D    TY  S GL+G
Sbjct: 63  VTRYQDQTIEVQDFGRGCPVDYNN-TEKRYNWELVYCELYAGGKYDAEGDTYAYSLGLNG 121

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           +G+      S+ + V + R    ++  F  G  +  L+K+   + K GTR  ++PD  +F
Sbjct: 122 LGLCATQFASEFMDVEIFRDGFRYNLHFEHGNNVGGLKKEPTTQKKTGTRTRWKPDLDVF 181

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            D           + + +A ++  +   +   +  +E      +E F +  G+  Y+Q  
Sbjct: 182 TD-IQIPDEFFHDILRRQAIVNPNLLFTY---RSQSEDGSFSVRE-FRYENGITDYVQEI 236

Query: 277 LENRSLISSEIFTGKTE-----KKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHE 331
           + ++++ S + +  + +      K  ++  +  A+ +  +      Y N+   + GG+ E
Sbjct: 237 VGDKAMTSIQHWQCEKKGRDRADKPEYKVRINVALTFSNQIKLTEFYHNSSFLEHGGSPE 296

Query: 332 SGLRVALTRGIKKY--AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
             +R A    I  Y        K    I   D+    V + S F  +  +  QTK  + +
Sbjct: 297 RAVRQAFVSQIDSYLKQNSKYLKNESKITYPDIEDCLVLVSSGFSTQTSYENQTKKAITN 356

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR---EVNRKTAIRK 446
                 +   L+   + Y ++NP EAT++ E ++     R    + R   +      I  
Sbjct: 357 KFIYEAMTEFLKHQIEVYFIENPDEATRICEQILVNKRSRENAERTRLNLKKKLAGTIDL 416

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             +  K  DC        EL+IVEGDSA GS K AR    QAV+P+RGKILN   A   K
Sbjct: 417 SNMVQKFVDCRTKDTARRELYIVEGDSALGSVKLAREAEFQAVIPVRGKILNCLKADYAK 476

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---------LRYEKVIIMTDADVDGAHIASLLLT 557
           I  N+ I D+++ LGC    + +            LR+ K++I TDADVDG  I +L+LT
Sbjct: 477 IFKNEIITDIIKVLGCGVEVRTKANKDLSSFSLENLRWHKIVICTDADVDGFQIRTLILT 536

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
             Y+    LI++ ++++   PL+ I    K+ +A+ E+ K KIL   +     K  I R 
Sbjct: 537 MLYRLTPTLIDEGYVYIAESPLYEINSKDKTYFAYTEKEKTKILSHLEG---KKFTIQRS 593

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           KGLGE     +  T M+   R L++V  ++   +      + + L+G     R  FI E 
Sbjct: 594 KGLGENEPEMMSLTTMNPATRRLIQVTSDEAEKTFA----AFDMLLGDNLQARKDFISEY 649

Query: 678 -ASFID 682
              +++
Sbjct: 650 GGDYLE 655


>gi|58696735|ref|ZP_00372279.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58537087|gb|EAL60209.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 621

 Score =  438 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 213/546 (39%), Positives = 319/546 (58%), Gaps = 13/546 (2%)

Query: 64  MYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122
           MYIG TD+   LHH+  EVIDNA+DE +AGY + IEVS++ +G ++V DNGRGIP + H 
Sbjct: 1   MYIGDTDDGSGLHHMVYEVIDNAIDESLAGYCDKIEVSINKDGSVSVTDNGRGIPTDIHE 60

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
           +    S  E+I+T LHAGGKFD++TY++SGGLHGVGISVVNALS  L +T+ R       
Sbjct: 61  E-EGISAAEVIMTQLHAGGKFDSNTYKVSGGLHGVGISVVNALSSWLELTIWRNKKEHFM 119

Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
           +F  G  + PL+   +  NKRGT++TF P  + F     F  + L    +  A+L+  + 
Sbjct: 120 RFEDGESIEPLKVVNENTNKRGTKVTFMPSTETFNGIN-FSYSTLESRIRELAFLNSNID 178

Query: 243 TCWSCDK-EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSE-IFTGKTEKKGTH-R 299
                 + E   +    +  +     G   ++Q   +N++ ++      G  E  G    
Sbjct: 179 ITLRDLRNEPYTESHFNQSNQSKDNFGTANFVQYLDKNKTHVTKIASMKGDAEDLGISLE 238

Query: 300 GTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISI 357
            ++EW  ++      +  + N I   +GGTH +G R ALT+ I  YA       K  +++
Sbjct: 239 ISMEWNDSY---YENMLCFTNNIRQRDGGTHLAGFRSALTKCINTYATNEGFLKKAKVNL 295

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             +D+      +LS+ + +P+F+ QTK KLVS +A+  VE+ + D     L  +P  A  
Sbjct: 296 TGEDVREGLTCVLSLKMPDPKFSSQTKDKLVSSEARAVVESIVSDKLSTILETDPKLAAS 355

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++E  I  ++ R   RK RE V  K  I    LPGKLADC +     +ELFIVEG+SAGG
Sbjct: 356 IVERAIRSAKGREAARKARELVKSKNNIDIATLPGKLADCQEKAPELSELFIVEGNSAGG 415

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRY 535
           +AKQ RNR  QAVL LRGKILNV     ++I ++ +I  L+ A+G    S++ + E  RY
Sbjct: 416 TAKQGRNRKTQAVLALRGKILNVERVSLDRIFSSAEIGSLITAIGAGIGSEHFDIEKARY 475

Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEE 595
            K+IIMTDADVDG+HI +L+LTFF++ M ++IE+ +L++  PPL+++T+  K  Y  D+E
Sbjct: 476 HKIIIMTDADVDGSHIRTLILTFFFRHMREVIEKGYLYIAQPPLYKVTKNAKDTYIKDDE 535

Query: 596 HKQKIL 601
             ++ +
Sbjct: 536 TFEEYI 541


>gi|94957790|gb|ABF47145.1| DNA topoisomerase IV subunit B [Entomoplasma somnilux]
          Length = 551

 Score =  438 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 207/569 (36%), Positives = 317/569 (55%), Gaps = 28/569 (4%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           TD K LHHL  E++DN++DE +AGYA  I V L+ NG +TV DNGRG+PV  H     KS
Sbjct: 2   TDVKGLHHLVWEIVDNSIDEALAGYATEISVILEKNGSVTVSDNGRGVPVGMHK--TGKS 59

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
           T E+I + LHAGGKF    Y+ SGGLHGVG SVVNALS ++++T+ R   I+  KF  G 
Sbjct: 60  TPEVIFSILHAGGKFGGDGYKTSGGLHGVGSSVVNALSSKMNITIYRDKKIWEIKFKDGG 119

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
            L+    +     K GT + F PD KIF     F  + + +  +  A L+  +K     +
Sbjct: 120 KLAQDLTEIGNTYKTGTTVNFLPDEKIFSAT-KFSFSTIAERLKESALLNSGLKITLKDE 178

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN-RSLISSEIFTGKTEKKGTHRGTVEWAIA 307
                     +  E+ F  GL+ +++   E+ + + +    TG+  K       VE  + 
Sbjct: 179 -------HADKFIEYQFENGLQEFVKELAEDFKPITTPITLTGENSK-----IEVEICMQ 226

Query: 308 WCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMI 364
           + E+    +  + N + T +GGTH +G ++ L + +  YA+ ++    +   + S+DL  
Sbjct: 227 YTEDYNETVLGFANNVKTGDGGTHITGFKIGLVKAMNDYAKSSKILKDKDPRLDSNDLRE 286

Query: 365 SAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
             + +++V + E   ++ GQTK KL +++A+   E+   + F+ +L +N  +ATK++E  
Sbjct: 287 GLIAVVTVKVPENLIQYEGQTKGKLGTVEARVATESITYNYFNFWLQENKAQATKIIEKA 346

Query: 423 IERSEERLRRRKQRE--VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
           +   + R   RK R+   + K  I+   + GKL           EL++VEGDSAGGSAK 
Sbjct: 347 LLARKARDEARKARQAIRDSKGKIKGKTMLGKLTPAQGRKKENNELYLVEGDSAGGSAKS 406

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            R+R+ QA+LPLRGK++N   A    +  N++I  ++ A+G    S +  +D+ Y K+II
Sbjct: 407 GRDRTFQAILPLRGKVINSEKAKLVDLLKNEEINTIITAIGAGIGSDFDIKDINYGKIII 466

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQK 599
           MTDAD DGAHI +LLLTFF++ M DLI   ++++  PPL++IT    K  Y  DE     
Sbjct: 467 MTDADTDGAHIQTLLLTFFFRYMKDLIINHNIYIALPPLYKITFSDKKIQYLWDENELAD 526

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQL 628
            +E    +   K EI R+KGLGEM A QL
Sbjct: 527 FME----NTSKKFEIQRYKGLGEMNADQL 551


>gi|317057033|ref|YP_004105500.1| DNA topoisomerase [Ruminococcus albus 7]
 gi|315449302|gb|ADU22866.1| DNA topoisomerase (ATP-hydrolyzing) [Ruminococcus albus 7]
          Length = 661

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 185/670 (27%), Positives = 307/670 (45%), Gaps = 36/670 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
               +Y    I +L+G + VR+RP +  G        H   E+I N++DE   G+ + I 
Sbjct: 3   EKKQDYGNEDITLLKGKDRVRLRPAVMFGSDGLSGCKHSVFEIISNSIDEAREGHGDKII 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLH 155
           V+   +  + V D GRG PV+ + +   +   E++   L+AGGK++N     YE + GL+
Sbjct: 63  VTKYFDDSIEVQDFGRGCPVD-YNQREKRYNWELVYCELYAGGKYNNNSGDNYEYALGLN 121

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           G+G       S+ + V V R    ++  F +G  +  L+K+E    K GTR  ++PD  +
Sbjct: 122 GLGACATQYSSEYMDVEVIRDGFKYNLHFEKGDNVGGLKKEEYSSKKTGTRTRWKPDLDV 181

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +    +      + + +A ++  V       +E        E+  +Y+  G+  Y++ 
Sbjct: 182 FTE-ISIEKEYFEDIMKKQAVVNPGVTFILRVQRE----NMSFEEITYYYENGIADYVKE 236

Query: 276 KLENRSLISSEIFTGKTE-----KKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330
                +L + + F+G  +      K  ++  +  A  +  +   +  + N+     GG+ 
Sbjct: 237 IAGEDTLTNVQHFSGDRKGRDRADKPEYKVKLGVAFVFSNKVQTLEYFHNSSFLSHGGSP 296

Query: 331 ESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           +  +R A    I  Y +      K    +   D+    V + S F  +  +A QTK  + 
Sbjct: 297 DDAVRSAFVSQINAYLKSNNKYNKNEKPVTFQDVADCLVLVSSSFSTQTSYANQTKKAIT 356

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR---EVNRKTAIR 445
           +   +  +   L+   + Y ++NP EA K+ E V+     R      R   +   +  I 
Sbjct: 357 NKFIKECMTEFLKHNLEVYFIENPDEALKIAEQVLVNKRSRESAETSRLNIKKKLQGTID 416

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
                 K  DC        EL+IVEGDSA GS K AR+   QAV+P+RGKILN   A  +
Sbjct: 417 LSNQVQKFVDCRSKDLSRRELYIVEGDSALGSVKLARDAEFQAVIPVRGKILNCLKADYD 476

Query: 506 KIRNNQQIMDLVQALGCRTRSQ---------YREEDLRYEKVIIMTDADVDGAHIASLLL 556
           KI  N+ I DL++ LGC              +  ++LR+ K++I TDADVDG  I +L+L
Sbjct: 477 KIFKNEIITDLIKVLGCGVEVNTGKKKDLSAFNLDNLRWNKIVICTDADVDGFQIRTLIL 536

Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616
           T  Y+    LIE+ ++++   PLF IT   K+ +A+DE  K KIL+     G     I R
Sbjct: 537 TMLYRLTPTLIEKGYVYIAESPLFEITTKDKTYFAYDEPEKDKILKMI---GDKSFTIQR 593

Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
            KGLGE  A  +  T M+   R L++V  +     +  T    N L+G     R +FI  
Sbjct: 594 SKGLGENEADMMSLTTMNPETRRLIKVNPDD----MDMTSWMFNMLLGDDLAGRKEFITN 649

Query: 677 R-ASFIDDVG 685
             A +++   
Sbjct: 650 NGAEYLEMAD 659


>gi|313635495|gb|EFS01732.1| DNA gyrase, B subunit [Listeria seeligeri FSL N1-067]
          Length = 528

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 205/532 (38%), Positives = 308/532 (57%), Gaps = 14/532 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              Q  + +Y+   I++LEGLE VR RPGMYIG T ++ LHHL  E++DNA+DE +AG+ 
Sbjct: 7   TNVQENASDYNEDQIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVWEIVDNAIDEALAGFC 66

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             IE++++ +  +TV DNGRGIP   + K   + T+E+I T LHAGGKF    Y++SGGL
Sbjct: 67  TEIEITIEADNSITVRDNGRGIPTGINEKI-GRPTVEVIFTVLHAGGKFGGGGYKVSGGL 125

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS  L V V R+   + Q+F RG  +  +E++ +  + RGT + F PDP+
Sbjct: 126 HGVGASVVNALSTYLEVYVHREGKKYYQRFERGDVVMDMEEQGET-DYRGTIVHFTPDPQ 184

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   FD   L   T+  A+L+  +       +E  +      +++F++ GG+++Y++
Sbjct: 185 IFSETTEFDFDTLRTRTRELAFLNRGLTISIEDKREEHK-----VRKDFHYEGGIRSYVE 239

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333
              + + +I       + E+       VE ++ +          + N I T EGGTHESG
Sbjct: 240 HLNKAKDVIHEPPIYLEGERDDIM---VEISMQYNTGFSSNIISFANNIHTYEGGTHESG 296

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            + ALTR I  YA   +       ++  +D+      I+S+   +P+F GQTKTKL + +
Sbjct: 297 FKTALTRVINDYARRNKVFKDSDDNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSE 356

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLP 450
           A+   +    +  + ++++NP  A K++E  V+        +R +    + + +    LP
Sbjct: 357 ARSITDKLFSEALNKFMMENPDVAKKIVEKGVVASRARLAAKRAREVARKSSGLEISSLP 416

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I  N
Sbjct: 417 GKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILAN 476

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
           ++I     A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ 
Sbjct: 477 EEIRTXFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRY 528


>gi|288561858|gb|ADC53565.1| DNA gyrase subunit beta [Acidovorax cattleyae]
          Length = 762

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 217/579 (37%), Positives = 319/579 (55%), Gaps = 47/579 (8%)

Query: 62  PGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           PGMYIG T D   LHHL  EV+DN++DE +AG+ + I V++  +  ++VVDNGRGIP   
Sbjct: 1   PGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHSDNSISVVDNGRGIPTGV 60

Query: 121 ---HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN 177
                  P +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV R  
Sbjct: 61  KMDDKHEPRRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKMLRLTVRRDG 120

Query: 178 TIFSQKFSRG------------IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225
            +   +FS+G            + +SP+    +  +KRGT + F PD +IF +   F   
Sbjct: 121 KVHLLEFSQGFVQNRILETVNGVEVSPMRVTGET-DKRGTEVHFLPDTEIFKENYDFHYE 179

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
            L K  +  ++L+  V+     ++   E         F   GG+  ++Q    ++ ++  
Sbjct: 180 ILAKRLRELSFLNNGVRIRLKDERTGKEDD-------FAGSGGVMGFVQFINASKKVLHP 232

Query: 286 EIFTGKTEKKGTH-------RGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVA 337
             F     +              VE A+ W +  N  +  + N I   +GGTH +GLR A
Sbjct: 233 NAFHATGSRPAETYGGIPGTEIGVEVAMQWNDGFNESVLCFTNNIPQRDGGTHLTGLRAA 292

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           +TR I KY E  +   K  + +  DD+      +LSV + EP+F+ QTK KLVS + +  
Sbjct: 293 MTRVIGKYIEQNEMAKKAKVEVSGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAP 352

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLA 454
           VE+ +      YL + P +A  L   ++E +  R   RK RE+ R+   +  + LPGKLA
Sbjct: 353 VEDIVAKALTDYLEERPNDAKILCGKIVEAARAREAARKAREMTRRKGVLDGMGLPGKLA 412

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  EK+  + +I+
Sbjct: 413 DCQEKDPAMSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARYEKLLTSNEIL 472

Query: 515 DLVQALGCRT------------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
            L+ ALG                  +  + LRY ++IIMTDADVDGAHI +LLLTFFY++
Sbjct: 473 TLITALGTGIGKASADGTGRSGADDFNVDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQ 532

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           M +L+E+ H+++  PPL+++  G + +Y  D       L
Sbjct: 533 MPELVERGHIYIAQPPLYKVKNGKEELYLKDGPALDTFL 571


>gi|70704950|gb|AAZ06866.1| DNA gyrase subunit B [Acholeplasma multilocale]
          Length = 539

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 214/549 (38%), Positives = 318/549 (57%), Gaps = 17/549 (3%)

Query: 73  ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
            LHHL  E+IDN++DE +AG A+ I+V++  +G + V DNGRGIPV    +   KS LE+
Sbjct: 4   GLHHLVWEIIDNSIDEAMAGEADTIKVTITNDGEVIVQDNGRGIPVGIQ-QDSGKSALEL 62

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
           + T LHAGGKFD+ +Y+ISGGLHGVG SVVNALS  + V V R   I+ Q FS G     
Sbjct: 63  VFTQLHAGGKFDSDSYKISGGLHGVGASVVNALSLYVDVQVMRDGKIYHQVFSGGGTEQS 122

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
             +     + RGT + F+PDP+IF +   FD   +    +  +YL+  +K   + D+   
Sbjct: 123 ELEIIGETDLRGTIVRFKPDPEIFLETVTFDFETIRNKAKQLSYLNKGIKLELTDDR--- 179

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
               I +  E++FP G+  Y++ K E ++ I+  +F    + +      VE A+ +  E 
Sbjct: 180 ----IEKHVEYHFPNGILDYVKEKNETKTKINPNVFYIDGKHEEI---EVEVALQYNSEY 232

Query: 313 PEIT-SYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMISAVGI 369
            E   ++ N I T EGG+HE GLR +LTR + +Y       NK       DD+    V I
Sbjct: 233 QENLVTFVNNINTHEGGSHEDGLRQSLTRVLNRYAVKTAKANKAPSKYSWDDIKEGMVCI 292

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           +S+   +P++ GQTKTKL + DA++ V+  + D F+ +L+++P +A  +L+      + R
Sbjct: 293 VSIRHTDPQYEGQTKTKLANPDAKKAVDAVVGDAFEEFLLKSPEDAKAILDKNANAQKAR 352

Query: 430 LRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
           +  ++ RE   RK A+    LPGKLADC    A   EL++VEGDSAGGSAK  RNR  QA
Sbjct: 353 IAAQRAREETRRKGALDTFSLPGKLADCESKDAEIAELYLVEGDSAGGSAKTGRNRKFQA 412

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           +LPLRGK+LNV      +   N +I  +V A+G   +       +RY K++IMTDADVDG
Sbjct: 413 ILPLRGKVLNVERVAEARAFANNEIKSIVTAIGTGIKEDIDLSKIRYGKIVIMTDADVDG 472

Query: 549 AHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           AHI +LLLTFFY+ M +LI+  ++++  PPL++I  G K  YA+ ++  +    +     
Sbjct: 473 AHIRTLLLTFFYRYMKELIKNGNIYIAQPPLYKIEAGKKVAYAYSDQQLEDF--KAGDFE 530

Query: 609 KGKIEISRF 617
             +  I R+
Sbjct: 531 GTRYTIQRY 539


>gi|220928823|ref|YP_002505732.1| DNA gyrase subunit B domain protein [Clostridium cellulolyticum
           H10]
 gi|219999151|gb|ACL75752.1| DNA gyrase subunit B domain protein [Clostridium cellulolyticum
           H10]
          Length = 660

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 180/674 (26%), Positives = 313/674 (46%), Gaps = 39/674 (5%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              +   + Y   SI  L+G + VR+RPG+  G        H F E++ N++DE   G+ 
Sbjct: 1   MTKKDRKNEYGNESISSLKGADRVRLRPGVIFGSDGLDGCEHSFFEILSNSIDEAREGHG 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST---YEIS 151
           N+IE++   +  + V D GRG+PV+ + K   +   E++   L+AGGK+ N++   YE S
Sbjct: 61  NIIEITRFADNSIMVQDWGRGLPVDYNSKEE-RFNWELVYCELYAGGKYQNNSGENYEYS 119

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
            GL+G+G       S+   VTV R    +   F +G  +  L+K++   ++  T   +RP
Sbjct: 120 LGLNGLGACATQYSSEYFDVTVFRDGYRYDLHFEKGENIGGLKKEKCKYDRTSTIQKWRP 179

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           D  +F D           + + +A ++  +K     ++         E   + +  G+  
Sbjct: 180 DIDVFTD-IDIPLEYYQTVLKKQAVVNAGLKFILKDEES-------GETYIYMYENGIVD 231

Query: 272 YLQTKLENRSLISSEIFTGKTE-----KKGTHRGTVEWAIAWCEENPEITSYCNTILTDE 326
           Y++   ++      + + G         K  ++  ++ A  +      +  Y N+   + 
Sbjct: 232 YIKEITKDTGFTEVQFYEGSARGRDRADKPEYKVKMQIAFCFNNHTNLLEYYHNSSFLEY 291

Query: 327 GGTHESGLRVALTRGIKK--YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GG  +  ++ A+   I K   A    NK    I   D+  S + +++ F     +  QTK
Sbjct: 292 GGAPDKAVKNAMIYEIDKSIKARGKYNKDESKITFADIEDSLILVVNSFSTITSYENQTK 351

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR---EVNRK 441
             + +   Q T+ + L+   + Y ++N IE+ K++E ++     R    K R   +    
Sbjct: 352 KSITNKFIQETMTDFLKQQLEIYFIENKIESDKIIEQILVNKRSRETAEKTRINIKKKLS 411

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +       K  DC        E++IVEGDSA G+ K  R+   QA++P+RGKILN   
Sbjct: 412 GNLDISNRVKKFVDCRTKDISRREIYIVEGDSALGACKLGRDAEFQAIMPVRGKILNCLK 471

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREED---------LRYEKVIIMTDADVDGAHIA 552
           A  + I  N+ I+DL++ LGC    + +            LR++KVII TDADVDG  I 
Sbjct: 472 AQYDNIFKNEIIIDLLKVLGCGVEIKSKHNKDLNTFDLANLRWDKVIICTDADVDGFQIR 531

Query: 553 SLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612
           +L+LT  Y+ +  L+    +F+   PLF IT   KS +A+ E+ K +IL + +     K 
Sbjct: 532 TLILTMLYRLVPTLLSVGKVFIAESPLFEITCKNKSYFAYTEKEKAEILAKLEG---KKY 588

Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
            I R KGLGE     + ET M+   R L++V      + ++ T    + L+G     R +
Sbjct: 589 TIQRSKGLGENEPEMMWETTMNPATRRLIKVM----PSDVEKTTMMFDVLLGDNLAGRKQ 644

Query: 673 FIQERA-SFIDDVG 685
           FI++    ++D + 
Sbjct: 645 FIEDNGNKYLDMID 658


>gi|115373779|ref|ZP_01461072.1| DNA gyrase, B subunit [Stigmatella aurantiaca DW4/3-1]
 gi|115369178|gb|EAU68120.1| DNA gyrase, B subunit [Stigmatella aurantiaca DW4/3-1]
          Length = 774

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 210/566 (37%), Positives = 321/566 (56%), Gaps = 24/566 (4%)

Query: 71  EKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP--KFPNKS 128
              LH L  EV+DNA+DE +AGY   I V +  +G L+V DNGRGIPV  HP  KF +K 
Sbjct: 2   TYGLHKLVYEVVDNAVDEALAGYCTEISVDIHVDGSLSVQDNGRGIPVGPHPDPKFHDKD 61

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
           T++++LT LHAG KF N  Y++SGGLHGVG++ VN LS+ L V + R   ++ Q +SRGI
Sbjct: 62  TVDVVLTELHAGSKFGNGAYKVSGGLHGVGVTCVNFLSEWLKVRIQRNGKVYEQSYSRGI 121

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
           P   +++     +KRGT + F+PD ++      FD   L +  +  A+L+  +      +
Sbjct: 122 PDGKVKEVG-TTDKRGTLVWFKPDTQVMEAV-DFDFETLSQRLRELAFLNAGLHISIRDE 179

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +   E         F F GG+ ++++   +++  +  +    +TEK+G    ++E A+ W
Sbjct: 180 RTNKEHE-------FKFDGGIGSFVEYLNKSKQALHDKPIFVRTEKEGV---SLELAMQW 229

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMIS 365
            +     I ++ N I T EGG+H SG + ALTR +  YAE +   + +      +D    
Sbjct: 230 NDGYDERIYTFANNINTHEGGSHLSGFKAALTRTLNSYAEKSGLWKDLKETPTGEDAREG 289

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IE 424
              ++SV +  P+F GQTKTKL + + +  VE  + D    YL +NP    K++  +   
Sbjct: 290 LAAVISVKLSNPQFEGQTKTKLGNSEIKGLVEQMVNDQLATYLEENPSNGKKVVAKIGDA 349

Query: 425 RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
                  R+ +  V RK  +    LPGKLADC       +EL+IVEGDSAGGSAKQ R+R
Sbjct: 350 CRARIAARKARETVRRKGILDGGGLPGKLADCQSRDPKESELYIVEGDSAGGSAKQGRDR 409

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTD 543
            NQA+LPLRGKILNV  A  EK+  + +I+ L+ ALG    ++  +    RY ++I+MTD
Sbjct: 410 RNQAILPLRGKILNVEKARFEKMLTSAEIITLITALGTGIGAEDYDPAKARYNRIILMTD 469

Query: 544 ADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEE 603
           ADVDG+HI +LLLTFF+++M +L++  +L++  PPL+++T+  K +Y  DE    + L  
Sbjct: 470 ADVDGSHIRTLLLTFFFRQMRELLDLGYLYIAQPPLYKVTRNKKDLYVKDERALNEYLLR 529

Query: 604 FKKHGKGKIEISRFKGLGEMLASQLK 629
                   +  +     GE+  S+LK
Sbjct: 530 IAAEHSRVVTPN-----GELGGSELK 550



 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 8/110 (7%)

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PP + +      V A   +    +L   +K  +  + + R+KGLGEM   QL +T M+ 
Sbjct: 672 RPP-YTVKVDGGEVTAFSVQE---VLAVVRKDAQKGLGLQRYKGLGEMNPEQLWDTTMNP 727

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             RTLL+V++   + S        + LMG   + R +FI+  A  + ++ 
Sbjct: 728 ATRTLLQVQLKDAVES----DGIFSLLMGEAVEPRREFIERNALDVQNLD 773


>gi|71725918|gb|AAZ39077.1| gyrase subunit B [Exiguobacterium undae]
          Length = 513

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 208/523 (39%), Positives = 301/523 (57%), Gaps = 14/523 (2%)

Query: 60  MRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119
            RPGMYIG T  K LHHL  E++DN++DE +AGY + I+V+++    + V DNGRGIPV+
Sbjct: 1   KRPGMYIGSTASKGLHHLVWEIVDNSIDEALAGYCDTIKVTIEPGNSILVEDNGRGIPVD 60

Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179
              K   +  +E+ILT LHAGGKF    Y++SGGLHGVG SVVNALS +L V V R   +
Sbjct: 61  IQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTKLEVFVKRNEKL 119

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
           + Q + RG+P + L        + GT I F PD +IF +   +D   L    +  A+L+ 
Sbjct: 120 YYQAYHRGVPAADLAVIG-TSEETGTMIRFFPDDEIFQETLEYDYDLLATRLRELAFLNK 178

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            +    + D+        P    F++ GG+K+Y++    ++ ++  E       + G   
Sbjct: 179 GLTIEITDDR-----ADEPITRSFHYEGGIKSYVEHLNRSKEVVHEEPVYVHGNRDGI-- 231

Query: 300 GTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS-- 356
             VE A+ + +     I S+ N I T EGGTHE+G + ALTR I  YA+     +     
Sbjct: 232 -EVEVALQYNDGFAANIYSFTNNIPTHEGGTHETGFKTALTRVINDYAKKFGLMKEADGT 290

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           +  +D+      I+S+    P+F GQTKTKL + DA+   +      F+ ++++NP  A 
Sbjct: 291 LSGEDVREGMTAIVSIKHPNPQFEGQTKTKLGNSDARTATDTLFSSAFEQFMMENPTSAR 350

Query: 417 KLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            ++E  ++        +R +    RK  +    LPGKLADCS   A  +E++IVEGDSAG
Sbjct: 351 AIVEKGMMASRARMAAKRARELTRRKGVLEVSSLPGKLADCSSRDATISEIYIVEGDSAG 410

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           GSAK  R+R  QA+LP+RGKILNV  A  +KI  + +I  ++ ALG    S++  E  RY
Sbjct: 411 GSAKSGRDRHFQAILPIRGKILNVEKARLDKILGSNEIRTIITALGTSIGSEFNIEKARY 470

Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
            KVIIMTDADVDGAHI +LLLTFFY+ M  L+E  ++++  PP
Sbjct: 471 HKVIIMTDADVDGAHIRTLLLTFFYRYMRPLVEHGYVYIAQPP 513


>gi|71725916|gb|AAZ39076.1| gyrase subunit B [Exiguobacterium sibiricum]
          Length = 513

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 209/523 (39%), Positives = 302/523 (57%), Gaps = 14/523 (2%)

Query: 60  MRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119
            RPGMYIG T  K LHHL  E++DN++DE +AGY + I+V+++    + V DNGRGIPV+
Sbjct: 1   KRPGMYIGSTASKGLHHLVWEIVDNSIDEALAGYCDTIKVTIEPGNSILVEDNGRGIPVD 60

Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179
              K   +  +E+ILT LHAGGKF    Y++SGGLHGVG SVVNALS +L V V R   +
Sbjct: 61  IQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTKLEVFVKRNEKL 119

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
           + Q + RG+P + LE       + GT I F PD +IF +   +D   L    +  A+L+ 
Sbjct: 120 YYQAYHRGVPAADLEIIG-TSEETGTMIRFFPDDEIFQETLEYDYDLLATRLRELAFLNK 178

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            +    + D+        P    F++ GG+K+Y++    ++ ++  E       + G   
Sbjct: 179 GLTIEITDDR-----ADEPTTRSFHYEGGIKSYVEHLNRSKEVVHEEPVYVHGNRDGI-- 231

Query: 300 GTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS-- 356
             VE A+ + +     I S+ N I T EGGTHE+G + ALTR I  YA+     +     
Sbjct: 232 -EVEVALQYNDGFAANIYSFTNNIPTHEGGTHETGFKTALTRVINDYAKKFGLMKEADGT 290

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           +  +D+      I+S+    P+F GQTKTKL + DA+   +      F+ ++++NP  A 
Sbjct: 291 LSGEDVREGMTAIVSIKHPNPQFEGQTKTKLGNSDARTATDTLFSSAFEQFMMENPTSAR 350

Query: 417 KLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            ++E  ++        +R +    RK  +    LPGKLADCS   A  +E++IVEGDSAG
Sbjct: 351 AIVEKGMMASRARMAAKRARELTRRKGVLEVSSLPGKLADCSSRDATISEIYIVEGDSAG 410

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           GSAK  R+R  QA+LP+RGKILNV  A  +KI  + +I  ++ ALG    S++  E  RY
Sbjct: 411 GSAKSGRDRHFQAILPIRGKILNVEKARLDKILGSNEIRTIITALGTSIGSEFNIEKARY 470

Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
            KVIIMTDADVDGAHI +LLLTFFY+ M  L+E  ++++  PP
Sbjct: 471 HKVIIMTDADVDGAHIRTLLLTFFYRYMRPLVEHGYVYIAQPP 513


>gi|303238191|ref|ZP_07324727.1| DNA gyrase subunit B domain protein [Acetivibrio cellulolyticus
           CD2]
 gi|302594237|gb|EFL63949.1| DNA gyrase subunit B domain protein [Acetivibrio cellulolyticus
           CD2]
          Length = 659

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 178/674 (26%), Positives = 310/674 (45%), Gaps = 40/674 (5%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + QS  + Y   SI  L+G + VR+RP +  G    +   H   E++ N++DE   G+ 
Sbjct: 1   MSKQSKVEQYGNESITSLKGADRVRLRPSVIFGSDGIEGCEHSVFEILSNSIDEAREGFG 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST---YEIS 151
            +IEVS   +  + + D+GRGIP++ + K   +   E++   L+AGGK+ N++   YE S
Sbjct: 61  RVIEVSRFKDNSVMIKDHGRGIPLDYNEK-EQRYNWELVFCELYAGGKYKNNSGENYEFS 119

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
            GL+G+G       S+ + VTV R    +   F +G  +  L K++      GT I ++P
Sbjct: 120 LGLNGLGSCATQYSSEYMDVTVYRDGFKYDLHFEKGENVGGLLKQKCNYEGTGTIIKWKP 179

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           D  +F D           + + +A ++  +K     ++         E  E+ +  G+  
Sbjct: 180 DLDVFTDIN-IPLEYYSNILKKQAVVNAGLKFVLFDEEST-------ETFEYCYENGIVD 231

Query: 272 YLQTKLENRSLISSEIFTGKT-----EKKGTHRGTVEWAIAWCEENPEITSYCNTILTDE 326
           Y+      +S    + +   T     E K  ++  ++ A ++  E   +  Y N+   + 
Sbjct: 232 YITEVSSEKSFTGIQFYETSTKGRDREDKPEYKVKMQIAFSFNNEINMMEYYHNSSFLEH 291

Query: 327 GGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GG  +  ++ A    I K  +      K    I   D+  S + + + F     +  QTK
Sbjct: 292 GGAPDKAVKNAFVYEIDKCIKARGKYTKDEAKITFQDIQDSLILVTNSFSTITSYENQTK 351

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR---EVNRK 441
             + +   Q  + + L+   + Y ++N +E+ K++E +I     R    K R   +    
Sbjct: 352 KSITNKFIQEAMTDFLKQQLEVYFIENKMESDKIIEQIIVNKRSRETAEKTRINIKKKLT 411

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             I       K  DC     +  E++IVEGDSA G+ K  R+   QA++P+RGKILN   
Sbjct: 412 GNIDISNRVKKFVDCRTKDINRREIYIVEGDSALGACKLGRDAEFQAIIPVRGKILNCLK 471

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREED---------LRYEKVIIMTDADVDGAHIA 552
           A  + I  ++ I+DL++ LGC    + +             R+ K+II TDADVDG  I 
Sbjct: 472 ADYDNIFKSEIIVDLLKVLGCGVEIKSKHNKELNTFDINNFRWSKIIICTDADVDGFQIR 531

Query: 553 SLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612
           +L+L   Y+ +  LI    +F+   PLF IT   K+ +A+ ++ K  I+ +      GK 
Sbjct: 532 TLILAMIYRLVPTLINLGKVFIAESPLFEITHKDKTYFAYSDKEKNDIVAKL----NGKY 587

Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
            + R KGLGE     + ET M+   R L++V  +     ++ T+   + L+G     R  
Sbjct: 588 SVQRSKGLGENQPEMMWETTMNPESRKLIKVMPDD----VESTERMFDVLLGDNLPGRKN 643

Query: 673 FIQERA-SFIDDVG 685
           FI+E    ++D + 
Sbjct: 644 FIEENGYRYLDMID 657


>gi|262395286|ref|YP_003287140.1| topoisomerase IV subunit B [Vibrio sp. Ex25]
 gi|262338880|gb|ACY52675.1| topoisomerase IV subunit B [Vibrio sp. Ex25]
          Length = 553

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 217/570 (38%), Positives = 302/570 (52%), Gaps = 21/570 (3%)

Query: 116 IPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR 175
           +PV+ HP+    S +E+IL  LHAGGKF N  Y+ SGGLHGVGISVVNALS  + VTV R
Sbjct: 1   MPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVTVRR 59

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
              ++   F  G  +S L       R  RGT + F PD K F     F   RL+   ++K
Sbjct: 60  DGQVYEIAFEHGDKVSDLTVTGTCGRRNRGTSVHFWPDAKYFDSAN-FSVTRLVNNLRAK 118

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           A L   ++   +            +  ++Y+  GLK YL   ++   +I  E FTG+   
Sbjct: 119 AVLCPGLEITLTDK-------VNGKDYKWYYEDGLKDYLAEGVKGYPVIPEEPFTGEFLA 171

Query: 295 KGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KR 353
                                 SY N I T +GGTH +GLR  L   ++++ E      R
Sbjct: 172 DTEA-ANWAVIWQPEGGEMITESYVNLIPTAQGGTHVNGLRQGLLEAMREFCEFRNLLPR 230

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
            + +  DD+      +LSV I++P+FAGQTK +L S      V   ++D F  +L + P 
Sbjct: 231 GVKLTGDDVFDRCSYVLSVKIQDPQFAGQTKERLSSRQTAAFVSGVVKDAFSLWLNEKPQ 290

Query: 414 EATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
            A +L E  I  +  R+R    ++V RK       LPGKL DCS      TE+F VEGDS
Sbjct: 291 LAEQLAEVCIANAHRRMR--AAKKVVRKKVASGPALPGKLTDCSAQDLSRTEIFFVEGDS 348

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAKQAR+R  QAV+PLRGKILN     ++++  +Q++ D+  ALG    S    E L
Sbjct: 349 AGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVALGIDPDSDNL-EGL 407

Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHD 593
           RY K+ I+ DAD DG HIA+LL   F +    L+E  H+++  PPL+RI  G +  YA D
Sbjct: 408 RYGKICILADADSDGLHIATLLCALFTRHFRALVEAGHIYVAMPPLYRIDCGKEVFYALD 467

Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
           ++ K  ILE   K  K KI + RFKGLGEM   QL+ET MD N R L+++ I+       
Sbjct: 468 DDEKDGILERLSKK-KAKINVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDST---- 522

Query: 654 DTQDSINKLMGTK-ADERFKFIQERASFID 682
            T + ++ L+G K AD+R  ++Q      +
Sbjct: 523 ATMEMMDMLLGKKRADDRRSWLQNNGDLAE 552


>gi|160933740|ref|ZP_02081128.1| hypothetical protein CLOLEP_02601 [Clostridium leptum DSM 753]
 gi|156867617|gb|EDO60989.1| hypothetical protein CLOLEP_02601 [Clostridium leptum DSM 753]
          Length = 662

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 188/663 (28%), Positives = 310/663 (46%), Gaps = 35/663 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y   SI  L+G + VR RP +  G    +   H   E++ N++DE   G+   I ++  
Sbjct: 7   EYGNESISSLKGADRVRKRPAVIFGSDGIEGCQHSIFEILSNSIDEAREGFGREIVLTRF 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLHGVGI 159
            +G + V D+GRGIPV+ + K  ++   E++   L+AGGK++N    +YE S GL+G+G+
Sbjct: 67  EDGSIEVEDHGRGIPVD-YNKNEDRYNWELVFCELYAGGKYNNASAESYEYSLGLNGLGL 125

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
                 S+ + V + R    ++  F  G  +  L K+   +   G++I ++PD ++F D 
Sbjct: 126 CSTQYASEYMDVDIRRDGLRYTLHFEHGENVGGLHKEPYAKKDTGSKIKWKPDLQVFTD- 184

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
                A  L M + +A ++  VK  +             E+  F +  G+  +++     
Sbjct: 185 IDVPVAYFLDMIKRQAIVNAGVKFVFRNQ-----AGRSFEETVFNYQDGITDHVKELAGE 239

Query: 280 RSLISSEIFTGKTE-----KKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGL 334
            +L   + +  + +      K  ++  +  A+ +  +      Y N+   + GG  E  +
Sbjct: 240 DALTPVQSWQAEKKVRDRADKPEYKCKINVALTFSNKISVAEYYHNSSWLEHGGAPEKAV 299

Query: 335 RVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R A    I  Y +     NK    I   D+    V ++S F     +  QTK  + +   
Sbjct: 300 RNAFVYQIDSYLKQTGKYNKNESKITFADVEDCLVIVISSFSSVTSYENQTKKAITNKGI 359

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR---EVNRKTAIRKLRL 449
           Q  +   LR   + Y ++NP++A K+   V+     R    K R   +    + +     
Sbjct: 360 QEAMVEMLRHQLEIYFIENPLDADKIAGQVLINKRSREDAEKTRLNLKKKLTSNMDITSR 419

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
             K  DC     +  ELFIVEGDSA G+ KQAR+   QA++P+RGKILN   A  +KI  
Sbjct: 420 VAKFVDCRSKDVNLRELFIVEGDSALGACKQARDPDFQAIIPIRGKILNCLKADYDKIFK 479

Query: 510 NQQIMDLVQALGCRTRSQYREED---------LRYEKVIIMTDADVDGAHIASLLLTFFY 560
           N  I DL++ LGC  + + +            LR+ KVI+ TDADVDG  I +LLLT  Y
Sbjct: 480 NDIITDLIKVLGCGVQVKSKANKELASFDLNQLRWSKVILCTDADVDGFQIRTLLLTMIY 539

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           +    LIE   +F+   PL+ IT  T + +A+ E  KQK L++ +  G G+  I R KGL
Sbjct: 540 RLTPALIEAGKVFIAESPLYEITSKTDTYFAYTEAEKQKFLDQLEAEG-GRFTIQRSKGL 598

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS- 679
           GE     +  T M+   R L++V        ++ T +  + L+G     R  +I E    
Sbjct: 599 GENEPDMMNLTTMNPQTRRLIKVM----PTDMEKTVEMFDLLLGDNLSGRKDYIAENGHL 654

Query: 680 FID 682
           ++D
Sbjct: 655 YLD 657


>gi|325678933|ref|ZP_08158531.1| DNA gyrase, B subunit, C-terminal domain protein [Ruminococcus
           albus 8]
 gi|324109437|gb|EGC03655.1| DNA gyrase, B subunit, C-terminal domain protein [Ruminococcus
           albus 8]
          Length = 661

 Score =  436 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 192/670 (28%), Positives = 311/670 (46%), Gaps = 36/670 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +   +Y    I +L+G + VR RP +  G        H   E++ N++DE   G+ + I 
Sbjct: 3   NKKQDYANDDITMLKGADRVRKRPAVIFGSDGIDGCQHSVFEILSNSIDEAREGHGDKII 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST---YEISGGLH 155
           V+   +  + V D GRG PV+ + +   +   E++   L+AGGKFDN++   Y  + GL+
Sbjct: 63  VTKYDDNSIEVQDFGRGCPVD-YNQREKRYNWELVYCELYAGGKFDNNSGENYSFALGLN 121

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           G+G       S+ + V V R    +   F +G     L+K+E  + K GTR  ++PD  +
Sbjct: 122 GLGACATQYSSEYMDVEVFRDGYKYDLHFEKGENKGGLKKEETKQKKTGTRTHWKPDLDV 181

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F D    D +    + + +A ++  V       +      G  E++ F++  G+  Y++ 
Sbjct: 182 FTDIN-IDKSFFEDVMKKQAVVNPGVTFLLRVQR----NDGTFEEQTFFYENGIADYVKE 236

Query: 276 KLENRSLISSEIFTGKTE-----KKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330
                +L + + FTG         K  ++  +  +  +  +   +  + N+     GG+ 
Sbjct: 237 IAGEDTLTNVQYFTGDRRGRDRADKDEYKVKLGVSFVFSNKVQTLEYFHNSSFLSHGGSP 296

Query: 331 ESGLRVALTRGIKKY--AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           +  +R A T  I  Y       NK    I   D+    V + S F  +  +A QTK  + 
Sbjct: 297 DDAVRSAFTSQINAYLKNNNKYNKNEKPINFQDVADCLVLVSSSFSTQTSYANQTKKAIT 356

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR---EVNRKTAIR 445
           +   +  +   L+   + Y ++NP EA K+ E V+     R      R   +   +  I 
Sbjct: 357 NKFIKECMTEFLKHNLEVYFIENPDEALKIAEQVLVNKRSRESAETSRLNIKKKLQGTID 416

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
                 K  DC        EL+IVEGDSA GS K AR+   QAV+P+RGKILN   A  +
Sbjct: 417 LSNQVQKFVDCRSKDLSRRELYIVEGDSALGSVKLARDAEFQAVIPVRGKILNCLKADYD 476

Query: 506 KIRNNQQIMDLVQALGCRTRSQ---------YREEDLRYEKVIIMTDADVDGAHIASLLL 556
           KI  N+ I DL++ LGC              +  ++LR+ KV+I TDADVDG  I +L+L
Sbjct: 477 KIFKNEIITDLIKVLGCGVEVNTGKKKDLSAFNLDNLRWNKVVICTDADVDGFQIRTLIL 536

Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616
           T  Y+    LIE+ ++++   PLF IT   K+ +A+DE  K KIL+     G     I R
Sbjct: 537 TMLYRLTPTLIEKGYVYIAESPLFEITTKDKTYFAYDEPEKDKILKMI---GDKSFTIQR 593

Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
            KGLGE  A  +  T M+   R L++V  +     ++ TQ   N L+G     R +FI  
Sbjct: 594 SKGLGENEADMMSLTTMNPETRRLIKVNPDD----VEMTQWMFNMLLGDDLAGRKEFITN 649

Query: 677 R-ASFIDDVG 685
             A +++   
Sbjct: 650 NGADYLEMAD 659


>gi|72388589|gb|AAZ67938.1| DNA gyrase subunit B [Psychrobacter arcticus]
          Length = 731

 Score =  436 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 198/530 (37%), Positives = 318/530 (60%), Gaps = 18/530 (3%)

Query: 77  LFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTT 136
           +  EV+DN++DE +AG+ + I++ +  +  ++V+DNGRG+PV+ HP+    S  ++I+T 
Sbjct: 7   MVFEVVDNSIDEALAGHCDQIDIIIHEDESVSVMDNGRGVPVDIHPE-EGVSAAQVIMTV 65

Query: 137 LHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK 196
           LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+     Q ++ G+P S +++ 
Sbjct: 66  LHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYHHHQTYTDGVPDSDIQQM 125

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
           E   ++ GT+I F P   +F     F+   L K  +  ++L+  V+   + ++       
Sbjct: 126 EAT-DQTGTQIRFYPSNDVFTGTI-FEYDILAKRLRELSFLNSGVRIVLTDER------- 176

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
           I ++ EF   GGL  ++      +  I+        ++ G    +VE A+ W +    ++
Sbjct: 177 IDKRHEFEHKGGLSEFVSYINAGKDGINDVFHFISNQEDGI---SVEVALQWTDTYNEKV 233

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH SG R ALTR +  Y +      K  +    DD       I+SV 
Sbjct: 234 FCFTNNIPQRDGGTHLSGFRSALTRCLNTYMDRENLFKKEKVVATGDDAREGLTAIVSVK 293

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + +P+F+ QTK KLVS + +  VE+A+ D F+ YL +NP     +   +I+ +  R   R
Sbjct: 294 VPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDYLQENPSAGKLIAGKIIDAARARDAAR 353

Query: 434 KQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           K      RKT +    LPGKLADC +     +EL+IVEGDSAGGSAKQ R+R  QA+LPL
Sbjct: 354 KAREMTRRKTTLDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRSRKTQAILPL 413

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHI 551
           +GKILNV  A  +K+ ++Q++ +L+ ALGC     +Y  + +RY K+IIMTDADVDG+HI
Sbjct: 414 KGKILNVERARFDKMLSSQEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTDADVDGSHI 473

Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
            +LLLTFF+++  +LIE+ ++++  PPL+++ +G + +Y  D+E  +  L
Sbjct: 474 RTLLLTFFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDDEALKAYL 523


>gi|326791469|ref|YP_004309290.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium lentocellum DSM
           5427]
 gi|326542233|gb|ADZ84092.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium lentocellum DSM
           5427]
          Length = 655

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 185/665 (27%), Positives = 311/665 (46%), Gaps = 40/665 (6%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
              YD  SI  L+G + VR+RPG+  G    +   H   E++ N++DE   GY + I+V+
Sbjct: 3   EKTYDNQSISALKGADRVRLRPGVIFGSDGIEGCQHSVFEILANSIDEFKEGYGHTIKVT 62

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLHGV 157
           L  +  +T+ D GRGIPV+ + +   +   E++   L+AGGK++N     YE S GL+G+
Sbjct: 63  LHADHSITIEDFGRGIPVD-YNEAEARYNWELVFCELYAGGKYNNNEGDNYEFSLGLNGL 121

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G       S+ + V V R   I++  F +G  +  L K +    + G++I ++PD  +F 
Sbjct: 122 GSCATQYSSEFMDVEVKRDGYIYNLHFEKGENIGGLRKTKAEYKQTGSKIHWKPDHDVFT 181

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           D     +     + + +A ++  ++  ++ +          EK  + +  G+  Y +   
Sbjct: 182 DVN-VSSEYFYDVLKRQAVVNKNLEFIFTDEISN-------EKHVYLYEDGILGYAKEVA 233

Query: 278 ENRSLISSEIFTGKT-----EKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHES 332
           E ++         +T     E +  ++   + A  +C E   +  Y N+   + GG+ + 
Sbjct: 234 EEKNFTDVVFTEQETKGKDREDRPEYKLKFQVAFCFCNEKNMLEYYHNSSYLEYGGSPDK 293

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
            ++ A    I +Y +     NK    I   D+  S + I + F     +  QTK  + + 
Sbjct: 294 AIKNAFVYAIDQYLKNENLYNKDEKKITFVDIQDSLILISNSFSTVTSYENQTKKAITNK 353

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT---AIRKL 447
             Q  ++  L++    Y ++N   A  + + V+     R +  + R   RK    +I   
Sbjct: 354 FIQEAIQEYLKEFLYIYFIENKDAAMLIAKQVLVNKRSREKAERTRINVRKQLSGSIDIG 413

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
               K  DC        EL+IVEGDSA GS K  R+   Q ++P+RGKILN   A  +KI
Sbjct: 414 NRIKKFVDCRTKDVTRRELYIVEGDSALGSCKLGRDSEFQGIMPVRGKILNCLKADYDKI 473

Query: 508 RNNQQIMDLVQALGCRTRSQYREED---------LRYEKVIIMTDADVDGAHIASLLLTF 558
             +  I+DL++ LGC      +            LR+ KVII TDADVDG  I +L+LT 
Sbjct: 474 FKSDIIIDLLKVLGCGIEITSKHNKDLHTFELDNLRWNKVIICTDADVDGYQIRTLILTM 533

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
            Y  +  LI++  +F+   PL+ I    K  +A+ E  K +IL +     K K  I R K
Sbjct: 534 LYALVPTLIKEGRVFIAETPLYEINTKDKVYFAYSEYEKTEILSKI----KTKYTIQRSK 589

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           GLGE     + ET M    R L++V      ++++DTQ   + L+G     R +FI +  
Sbjct: 590 GLGENDPDMMWETTMCPESRRLIQVM----PDNMEDTQTMFDVLLGDDLKGRKQFIADEG 645

Query: 679 -SFID 682
             ++D
Sbjct: 646 YRYLD 650


>gi|288561856|gb|ADC53564.1| DNA gyrase subunit beta [Acidovorax citrulli]
          Length = 762

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 217/579 (37%), Positives = 319/579 (55%), Gaps = 47/579 (8%)

Query: 62  PGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           PGMYIG T D   LHHL  EV+DN++DE +AG+ + I V++  +  ++VVDNGRGIP   
Sbjct: 1   PGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHSDNSISVVDNGRGIPTGV 60

Query: 121 ---HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN 177
                  P +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV R  
Sbjct: 61  KMDDKHEPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKMLRLTVRRDG 120

Query: 178 TIFSQKFSRG------------IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225
            +   +FS+G            + +SP+    +  +KRGT + F PD +IF +   F   
Sbjct: 121 KVHLLEFSQGFVQNRILETVNGVEVSPMRVTGET-DKRGTEVHFLPDTEIFKENNDFHYE 179

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
            L K  +  ++L+  V+     ++   E         F   GG+  ++Q    ++ ++  
Sbjct: 180 ILAKRLRELSFLNNGVRIRLKDERTGKEDD-------FSGAGGVMGFVQFINASKKVLHP 232

Query: 286 EIFTGKTEKKGTH-------RGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVA 337
             F     +              VE A+ W +  N  +  + N I   +GGTH +GLR A
Sbjct: 233 NAFHATGSRPAETYGGIPGTEIGVEVAMQWNDGFNESVLCFTNNIPQRDGGTHLTGLRAA 292

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           +TR I KY E  +   K  + +  DD+      +LSV + EP+F+ QTK KLVS + +  
Sbjct: 293 MTRVIGKYIEQNELAKKAKVEVSGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAP 352

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLA 454
           VE+ +      YL + P +A  L   ++E +  R   RK RE+ R+   +  + LPGKLA
Sbjct: 353 VEDIVAKALTDYLEERPNDAKILCGKIVEAARAREAARKAREMTRRKGVLDGMGLPGKLA 412

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  EK+  + +I+
Sbjct: 413 DCQEKDPALSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARYEKLLTSNEIL 472

Query: 515 DLVQALGCRT------------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
            L+ ALG                  +  + LRY ++IIMTDADVDGAHI +LLLTFFY++
Sbjct: 473 TLITALGTGIGKASADGTGKGGADDFNVDKLRYHRIIIMTDADVDGAHIRALLLTFFYRQ 532

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           M +L+E+ H+++  PPL+++  G + +Y  D       L
Sbjct: 533 MPELVERGHIYIAQPPLYKVKNGKEELYLKDGPALDTFL 571


>gi|71725922|gb|AAZ39079.1| gyrase subunit B [Exiguobacterium antarcticum]
          Length = 513

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 207/523 (39%), Positives = 301/523 (57%), Gaps = 14/523 (2%)

Query: 60  MRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119
            RPGMYIG T  K LHHL  E++DN++DE +AGY + I+V+++    + V DNGRGIPV+
Sbjct: 1   KRPGMYIGSTASKGLHHLVWEIVDNSIDEALAGYCDTIKVTIESGNSILVEDNGRGIPVD 60

Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179
              K   +  +E+ILT LHAGGKF    Y++SGGLHGVG SVVNALS +L V V R   +
Sbjct: 61  IQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTKLEVFVKRNEKL 119

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
           + Q + RG+P   L        + GT I F PD +IF +   +D   L    +  A+L+ 
Sbjct: 120 YYQAYHRGVPAEDLAVIG-TSEETGTMIRFFPDDEIFQETLEYDYDLLATRLRELAFLNK 178

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            +    + D+        P    F++ GG+K+Y++    ++ ++  E       + G   
Sbjct: 179 GLTIQITDDRSD-----EPIMRSFHYEGGIKSYVEHLNRSKEVVHEEPVYVHGNRDGI-- 231

Query: 300 GTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS-- 356
             VE A+ + +     I S+ N I T EGGTHE+G + ALTR +  YA+     +     
Sbjct: 232 -EVEVALQYNDGFAANIYSFTNNIPTHEGGTHETGFKTALTRVVNDYAKKFGLMKDADGT 290

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           +  +D+    + I+S+    P+F GQTKTKL + DA+   +      F+ ++++NP  A 
Sbjct: 291 LSGEDVREGMIAIVSIKHPNPQFEGQTKTKLGNSDARTATDTLFSSAFEQFMMENPTSAR 350

Query: 417 KLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            ++E  ++        +R +    RK  +    LPGKLADCS   A  +E++IVEGDSAG
Sbjct: 351 AIVEKGMMASRARMAAKRARELTRRKGVLEVSSLPGKLADCSSRDATISEIYIVEGDSAG 410

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           GSAK  R+R  QA+LP+RGKILNV  A  +KI  + +I  ++ ALG    S++  E  RY
Sbjct: 411 GSAKSGRDRHFQAILPIRGKILNVEKARLDKILGSNEIRTIITALGTSIGSEFNIEKARY 470

Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
            KVIIMTDADVDGAHI +LLLTFFY+ M  L+E  ++++  PP
Sbjct: 471 HKVIIMTDADVDGAHIRTLLLTFFYRYMRPLVEHGYVYIAQPP 513


>gi|72388567|gb|AAZ67927.1| DNA gyrase subunit B [Psychrobacter frigidicola]
          Length = 731

 Score =  435 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 196/532 (36%), Positives = 315/532 (59%), Gaps = 18/532 (3%)

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           HH+  EV+DN++DE +AG+ + I++ +  +  ++V DNGRG+PV+ HP+    S  ++I+
Sbjct: 1   HHMVFEVVDNSIDEALAGHCDRIDIVIHDDESVSVSDNGRGVPVDIHPE-EGVSAAQVIM 59

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+   + Q ++ G+P   ++
Sbjct: 60  TVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYHYQQTYTDGVPDGDIQ 119

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
             E   ++ GT+I F P   +F     F+   L K  +  ++L+  V+   + ++     
Sbjct: 120 PIEAT-DRTGTQIRFYPSTDVFTGTI-FEYDILAKRLRELSFLNSGVRIILTDER----- 172

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313
             I ++ EF   GGL  ++      +  ++        +  G    +VE A+ W +    
Sbjct: 173 --IDKRHEFEHKGGLSEFVSYINAGKDGVNEVFHFVSEQADGI---SVEVALQWTDTYNE 227

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
           ++  + N I   +GGTH SG R ALTR +  Y +      K  I    DD       I+S
Sbjct: 228 KVLCFTNNIPQRDGGTHLSGFRSALTRCLNTYMDRENLFKKEKIVATGDDAREGLTAIVS 287

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V + +P+F+ QTK KLVS + +  VE+A+ D F+ YL +NP     +   +I+ +  R  
Sbjct: 288 VKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDYLQENPGAGKLIAGKIIDAARARDA 347

Query: 432 RRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            RK      RKT +    LPGKLADC +     +EL+IVEGDSAGGSAKQ R+R  QA+L
Sbjct: 348 ARKAREMTRRKTTLDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRSRKTQAIL 407

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGA 549
           PL+GKILNV  A  +K+ ++ ++ +L+ ALGC     +Y  + +RY K+IIMTDADVDG+
Sbjct: 408 PLKGKILNVERARFDKMLSSAEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTDADVDGS 467

Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           HI +L +TFF+++  +LIE+ ++++  PPL+++ +G + +Y  D+E  +  L
Sbjct: 468 HIRTLKMTFFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDDEALKAYL 519


>gi|34304599|gb|AAQ63405.1| DNA gyrase subunit B [Mesoplasma seiffertii]
          Length = 531

 Score =  435 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 215/542 (39%), Positives = 315/542 (58%), Gaps = 15/542 (2%)

Query: 72  KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLE 131
             LHHL  E++DN++DE +AG AN I V++   G + V DNGRGIPV    +   KS LE
Sbjct: 1   TGLHHLVWEILDNSIDEAMAGEANTISVTITKEGEVIVEDNGRGIPVGIQ-EDSGKSALE 59

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           ++ T LHAGGKFD+ +Y+ISGGLHGVG SVVNALS  + V V R   ++ Q FS G    
Sbjct: 60  LVFTQLHAGGKFDSDSYKISGGLHGVGASVVNALSLYVDVLVMRDGNVYHQIFSDGGTKQ 119

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
              +     +KRGT + F+PDP+IF +   FD   +    +  +YL+  +K   +  +  
Sbjct: 120 TELEILGTTDKRGTIVRFKPDPEIFQETVTFDYETIRNKVKQLSYLNKGIKINLTDQR-- 177

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
                I +  E++FP G+  Y++ K E +S I+  ++    +        VE A+ +  E
Sbjct: 178 -----IDKTVEYHFPNGILDYVKEKNETKSKINPSVYYVDGKHDDI---EVEVALQYNAE 229

Query: 312 NPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVG 368
             E   ++ N I T EGG+HE GLR ALTR I +Y+E      K       DD+    V 
Sbjct: 230 YQENLITFVNNINTHEGGSHEDGLRQALTRVINRYSEKVAKGTKAPSKYSWDDIKEGMVC 289

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           I+S+   +P++ GQTKTKL + DA++ V+  + D F+ +L+++P +A  +L+      + 
Sbjct: 290 IVSIRHTDPQYEGQTKTKLANPDAKKAVDAVVGDSFEEFLLKSPEDAKAILDKNANAQKA 349

Query: 429 RLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
           R+  ++ RE   RK+A+    LPGKLADC    +   EL++VEGDSAGGSAK  RNR  Q
Sbjct: 350 RIAAQRAREETRRKSALDTFSLPGKLADCESKDSTIAELYLVEGDSAGGSAKTGRNRKFQ 409

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVD 547
           A+LPLRGK+LNV      +   N +I  +V A+G   +       LRY K++IMTDADVD
Sbjct: 410 AILPLRGKVLNVERVAEARAFANNEIKSIVTAIGTGIKEDLDLTKLRYGKIVIMTDADVD 469

Query: 548 GAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607
           GAHI +LLLTFFY+ M DL++  ++F+  PPL++I  G K  YA+ +    ++ E    +
Sbjct: 470 GAHIRTLLLTFFYRYMKDLVKNGNIFIAQPPLYKIEAGKKVAYAYSDAELDELKENEFSN 529

Query: 608 GK 609
            +
Sbjct: 530 SR 531


>gi|94983855|gb|ABF50632.1| DNA topoisomerase IV subunit B [Entomoplasma freundtii]
          Length = 554

 Score =  434 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 209/572 (36%), Positives = 311/572 (54%), Gaps = 28/572 (4%)

Query: 67  GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           G TD + LHHL  E++DN++DE +AGYA  I V+++ NG +TV DNGRG+P   H     
Sbjct: 1   GSTDNRGLHHLVWEIVDNSIDEALAGYATEINVTMEKNGSITVSDNGRGVPTGMHK--TG 58

Query: 127 KSTLEIILTTLHAGGKFD-NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFS 185
           KST E+I T LHAGGKF+ +  Y+ +GGLHGVG SVVNALS + +V   R   I+   F 
Sbjct: 59  KSTPEVIFTILHAGGKFNESGGYKTAGGLHGVGSSVVNALSSQFNVKSFRDKKIYEINFH 118

Query: 186 RGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
            G  +     +    NK GT + F PD  IF     F  + + +  +  A L+  +K   
Sbjct: 119 NGGAVKTPLHEIGTTNKTGTVVNFHPDATIFNAP-KFSFSTIKERLKESALLNSGLKITL 177

Query: 246 SCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
                           E+ F  GLK +++   E  + ++  I      K    R  V+ A
Sbjct: 178 DD-------MNNDRHIEYDFKDGLKEFVKELTEEFTPLTDTIII----KDSNSRIDVDIA 226

Query: 306 IAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDL 362
           + + ++    I  + N + T +GGT  +G +  L R I  YA+ ++    +   + S+DL
Sbjct: 227 MKYTDDYNETILGFANNVKTVDGGTQITGFKSGLARAINDYAKNSKILKDKDPRLDSNDL 286

Query: 363 MISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
                 I+SV + E   ++ GQTK KL +++A+  VENA+      +L +N ++AT++++
Sbjct: 287 REGLTAIVSVKVPENLIQYEGQTKGKLGTVEAKTAVENAVYKNLTFWLQENKVQATRIID 346

Query: 421 WVIERSEERLRRRKQREVNRKTAIRKLR---LPGKLADCSQNIAHGTELFIVEGDSAGGS 477
             +     R   RK R+  R T ++      + GKL        +  EL++VEGDSAGGS
Sbjct: 347 KAMLARRAREEARKARQAVRDTKMKGRSSRAMLGKLTPAQGRNRNINELYLVEGDSAGGS 406

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  R+R+ QA+LPLRGK++N   A    +  N++I  ++ A+G    S +  +D  Y+K
Sbjct: 407 AKSGRDRTFQAILPLRGKVINSEKAKITDLLKNEEINTIINAIGAGVGSDFEVKDANYDK 466

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEH 596
           +IIMTDAD DGAHI +LLLTFFY+ M DLI  K ++L  PPL+++T   K++ Y  DE  
Sbjct: 467 IIIMTDADTDGAHIQTLLLTFFYRYMKDLIVAKKVYLALPPLYKVTLADKTIHYLWDEND 526

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
               L    K    K +I R+KGLGEM A QL
Sbjct: 527 LTTFL----KKNNKKYDIQRYKGLGEMNAHQL 554


>gi|262404743|ref|ZP_06081298.1| topoisomerase IV subunit B [Vibrio sp. RC586]
 gi|262349775|gb|EEY98913.1| topoisomerase IV subunit B [Vibrio sp. RC586]
          Length = 553

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 208/570 (36%), Positives = 308/570 (54%), Gaps = 21/570 (3%)

Query: 116 IPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR 175
           +PV+ HP+    S +E+IL  LHAGGKF N  Y+ SGGLHGVGISVVNALS  + V V R
Sbjct: 1   MPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVAVRR 59

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
              ++   F  G  ++ L       R   GT + F PD K F     F  +RL+   ++K
Sbjct: 60  DGQVYEIAFEHGDKVTELAVTGTCGRRNTGTSVHFWPDTKYFDSPN-FSVSRLVNNLRAK 118

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           A L   ++  ++      E         + +  GLK YL   ++  +L+  E FTG+   
Sbjct: 119 AVLCPGLEIIFTDKVNNNE-------HRWLYEDGLKDYLAEGVKGYTLLPEEPFTGEFTA 171

Query: 295 KGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KR 353
           +     T               SY N I T +GGTH +GLR  L   ++++ E      R
Sbjct: 172 QTEA-ATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNLLPR 230

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
            + +  +D+      +LS+ +++P+FAGQTK +L S  +   V   ++D F  +L + P 
Sbjct: 231 GVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAFSLWLNEKPQ 290

Query: 414 EATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
            A +L E  I  +  R+R    ++V RK       LPGKL DC+    + TELF+VEGDS
Sbjct: 291 LAEQLAEVCIANAHSRMR--ASKKVVRKKIASGPALPGKLTDCTVQDLNRTELFLVEGDS 348

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAKQAR+R  QAV+PLRGKILN     ++++  +Q++ D+  ALG    +   E  L
Sbjct: 349 AGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVALGIDPDNDNLEA-L 407

Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHD 593
           RY KV I+ DAD DG HIA+LL   F +    L++  H+++  PPL+RI  G +  YA D
Sbjct: 408 RYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRIDCGKEVFYALD 467

Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
           ++ K+ +LE   +  K K+ + RFKGLGEM   QL+ET MD N R L+++ I+      +
Sbjct: 468 DQEKEGVLERLSQK-KAKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDD----AE 522

Query: 654 DTQDSINKLMGTK-ADERFKFIQERASFID 682
            T + ++ L+G K AD+R  ++Q      +
Sbjct: 523 ATDEMMDMLLGKKRADDRRTWLQRNGDMAE 552


>gi|326201733|ref|ZP_08191604.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Clostridium papyrosolvens DSM 2782]
 gi|325988333|gb|EGD49158.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Clostridium papyrosolvens DSM 2782]
          Length = 660

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 180/674 (26%), Positives = 313/674 (46%), Gaps = 39/674 (5%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
               S  + Y   SI  L+G + VR+RPG+  G        H F E++ N++DE   G+ 
Sbjct: 1   MTKDSRKNEYGNESISSLKGADRVRLRPGVIFGSDGLDGCEHSFFEILSNSIDEAREGHG 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST---YEIS 151
           N+IEV+   +  + + D GRG+PV+ + K   +   E++   L+AGGK+ N++   YE S
Sbjct: 61  NVIEVTRFADKSIMIQDWGRGLPVDYNTKEE-RFNWELVYCELYAGGKYQNNSGENYEYS 119

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
            GL+G+G       S+   VTV R    +   F +G  +  L+K++   +K  T   +RP
Sbjct: 120 LGLNGLGACATQYSSEYFDVTVFRDGYRYDLHFEKGENVGGLKKEKCKYDKTSTIQKWRP 179

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           D  +F +           + + +A ++  +K     ++         E   + +  G+  
Sbjct: 180 DIDVFTEIH-IPLEHFQTVLKKQAVVNAGLKFILKDEES-------GETFIYLYENGIVD 231

Query: 272 YLQTKLENRSLISSEIFTGKT-----EKKGTHRGTVEWAIAWCEENPEITSYCNTILTDE 326
           Y++   +       + + G T     E K  ++  ++ A  +  +   +  Y N+   + 
Sbjct: 232 YVKEITKETGFTEIQYYEGSTKGRDREDKPEYKVKMQIAFCFNNQTNLLEYYHNSSFLEY 291

Query: 327 GGTHESGLRVALTRGIKK--YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GG  +  ++ AL   I K   A    NK    I   D+  S + +++ F     +  QTK
Sbjct: 292 GGAPDKAVKNALIYEIDKGIKARGKYNKDESKITFADIEDSLILVVNSFSTITSYENQTK 351

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR---EVNRK 441
             + +   Q  + +  +   + Y ++N  E+ K++E ++     R    K R   +    
Sbjct: 352 KSITNKFIQEAMTDFFKQQLEIYFIENKFESDKIIEQILVNKRSRETAEKTRINIKKKLS 411

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +       K  DC        E++IVEGDSA G+ K  R+   QA++P+RGKILN   
Sbjct: 412 GNVDISNRVKKFVDCRTKDITKREIYIVEGDSALGACKLGRDAEFQAIMPVRGKILNCLK 471

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREED---------LRYEKVIIMTDADVDGAHIA 552
           A  + I  N+ I+DL++ LGC    + +            LR++KVII TDADVDG  I 
Sbjct: 472 AEYDSIFKNEIIVDLLKVLGCGVEIKSKHNKDLNTFDMANLRWDKVIICTDADVDGFQIR 531

Query: 553 SLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612
           +L+LT  Y+ +  L+ +  +F+   PLF IT   K+ +A+ E+ K +IL + K     K 
Sbjct: 532 TLILTMLYRLVPTLLTEGKVFIAESPLFEITCKNKAYFAYTEKEKAEILAKLKD---SKY 588

Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
            I R KGLGE     + +T M+   R L++V      + ++ T    + L+G     R +
Sbjct: 589 TIQRSKGLGENEPEMMWQTTMNPASRRLIKVM----PSDVEKTTMMFDVLLGDNLAGRKQ 644

Query: 673 FIQERA-SFIDDVG 685
           FI++    ++D + 
Sbjct: 645 FIEDNGSKYLDMID 658


>gi|268610222|ref|ZP_06143949.1| DNA topoisomerase (ATP-hydrolyzing) [Ruminococcus flavefaciens
           FD-1]
          Length = 659

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 184/666 (27%), Positives = 312/666 (46%), Gaps = 35/666 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  ++Y   SI +L+G + VR RP +  G        H   EVI N++DE  AGY N I 
Sbjct: 2   AKKNDYGNDSISMLKGADRVRKRPAVIFGSDGLDGCEHSVFEVISNSIDEARAGYGNKIV 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD--NSTYEISGGLHG 156
           ++   N  + V D GRG PV+ +     +   E++   L+AGGK+D  +  YE S GL+G
Sbjct: 62  ITHFRNNEIEVEDFGRGCPVDYNN-NEKRYNWELVYCELYAGGKYDAADDAYEYSLGLNG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           +G+      S+ + V V R    +   F +G  +  L+K+   + + GT+  +RPD ++F
Sbjct: 121 LGLCSTQYSSEFMDVQVIRDGFKYDLHFEKGENVGGLKKEPCKKKQTGTKTRWRPDLEVF 180

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            D           + + +A ++  +   +  + E     G   ++EF++  G+  Y+Q  
Sbjct: 181 TDIN-ISDEFFCDILKRQAIVNPNILFVFRSENE----AGGFNEQEFFYESGITEYVQEI 235

Query: 277 LENRSLISSEIFTGKT-----EKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHE 331
             + +L + + +T +      E K  ++  ++ A+ +  +      Y N+   + GG+  
Sbjct: 236 AGDSALTTIQHWTAEKKGRDREDKPEYKVKLDVALTFSNKAKLTEYYHNSSFLEHGGSPA 295

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
             ++ A    I  Y +      K    +   D+    + + S F  +  +A QTK  + +
Sbjct: 296 EAVKRAFQAQIDAYIKSINGYQKNESKVTYADVEECLILVSSSFSTQTSYANQTKKAITN 355

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV---NRKTAIRK 446
              +  +   LR   + Y ++NP EA ++ E V+     R    + R+         I  
Sbjct: 356 KFIREAMTEFLRHQLEVYFIENPDEAKRISEQVLLNKRSRESAERTRQNMKKKLTGTIDL 415

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             +  K  DC        E++IVEGDSA GS K AR+   QAV+P+RGKILN   A   K
Sbjct: 416 ANMVEKFVDCRTKDVTRREIYIVEGDSALGSVKLARDAEFQAVIPVRGKILNCLKADYGK 475

Query: 507 IRNNQQIMDLVQALGCRTR---------SQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557
           I  ++ I DL++ LGC            S +   + R+ K++I TDADVDG  I +L+LT
Sbjct: 476 IFKSEIITDLLKVLGCGVEVTAKANKELSTFDINNFRWSKIVICTDADVDGFQIRTLILT 535

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
             Y+    LI + ++++   PLF I    K+ +A+ E+ KQ+IL++    G  K  I R 
Sbjct: 536 MLYRLTPTLISEGYVYIAESPLFEINTKEKTYFAYTEQEKQRILDQI---GDKKHTIQRS 592

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           KGLGE     +  T M+ + R L++V       S     +    L+G     R  +I + 
Sbjct: 593 KGLGENEPDMMSLTTMNPDTRRLIKVTAEDIQESA----EIFEMLLGDDLQGRKDYISQY 648

Query: 678 -ASFID 682
            A ++D
Sbjct: 649 GADYLD 654


>gi|33860313|gb|AAQ54936.1| DNA gyrase subunit B [Mesoplasma corruscae]
          Length = 534

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 210/540 (38%), Positives = 315/540 (58%), Gaps = 15/540 (2%)

Query: 72  KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLE 131
             LHHL  E++DN++DE +AG+A+ I ++L  +G + V DNGRGIPV    +   KS LE
Sbjct: 1   SGLHHLVWEILDNSIDEAMAGFADKITLTLTKDGEVIVEDNGRGIPVGVQ-QDSGKSALE 59

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           ++ T LHAGGKFD+ +Y+ISGGLHGVG SVVNALS  + V V R+  I  Q FS G  + 
Sbjct: 60  LVFTQLHAGGKFDSDSYKISGGLHGVGASVVNALSLYVDVEVKREGKIHKQIFSAGGTIQ 119

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
              +      + GT++ F+PDP+IF +   +D   +    +  +YL+  +   ++ ++  
Sbjct: 120 TEIEIIGETVQTGTKVRFKPDPEIFTEVIDYDYETVRNKVKQLSYLNKGLVIQFNDER-- 177

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
                I    E++FP G+  Y++ K E +  I+  ++    +        VE A+ +  E
Sbjct: 178 -----IDRSIEYHFPNGILDYVKEKNETKQKINPSVYYIDGKYGDI---EVEVALQYNAE 229

Query: 312 NPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVG 368
             E   ++ N I T EGGTHE GLR AL R + +YAE     NK+A     DD+    V 
Sbjct: 230 YQESLITFVNNINTHEGGTHEDGLRQALVRVLNRYAEKVAIGNKQAAKYSWDDIKEGMVC 289

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           I+S+   +P++ GQTKTKL + DA++ V+  + D F+ +L+++P +A  +L+      + 
Sbjct: 290 IVSIRHTDPQYEGQTKTKLANPDAKKAVDVVVGDSFEEFLLKSPEDAKAILDKNANAQKA 349

Query: 429 RLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
           R+  ++ RE   RK+A+    LPGKLADC        EL++VEGDSAGGSAK  RNR  Q
Sbjct: 350 RIAAQRAREETRRKSALDTFSLPGKLADCESKDPSIAELYLVEGDSAGGSAKTGRNRKFQ 409

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVD 547
           A+LPLRGK+LNV      +   N +I  +V A+G   + +     +RY K++IMTDADVD
Sbjct: 410 AILPLRGKVLNVERVAEVRAFANAEIKSIVTAIGTGIKEELDLSKIRYGKIVIMTDADVD 469

Query: 548 GAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607
           GAHI +LLLTFFY+ M  L++  ++++  PPLF+I  G K  YA+ +   +   +   K 
Sbjct: 470 GAHIRTLLLTFFYRYMKQLVDNGNIYIAQPPLFKIEAGKKVEYAYSDAELENFKQNEFKD 529


>gi|254797071|ref|YP_003081909.1| DNA gyrase, B subunit [Neorickettsia risticii str. Illinois]
 gi|254590317|gb|ACT69679.1| DNA gyrase, B subunit [Neorickettsia risticii str. Illinois]
          Length = 758

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 200/552 (36%), Positives = 300/552 (54%), Gaps = 15/552 (2%)

Query: 64  MYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122
           MYIG TD+   LH +  EV+DN++DE +AGY   IEV +D +G + V DNGRG+P + H 
Sbjct: 1   MYIGDTDDGSGLHQMVYEVVDNSVDESLAGYCTAIEVVIDVDGSILVKDNGRGMPTDMH- 59

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
                S  E+I+T LHAGGKFD S+Y++SGGLHGVG+SVVNALSD L +T+ R   I   
Sbjct: 60  -GEGVSAAEVIMTQLHAGGKFDQSSYKVSGGLHGVGVSVVNALSDWLKLTIYRDGKIHFA 118

Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
           +F  G  +  L    +  +K GT + F P    F +      + L    +  ++L+  ++
Sbjct: 119 EFRNGETVRSLSVTGECGDKTGTLVHFLPSRSTFKNTTEVSFSTLENRFRELSFLNPGLE 178

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS-EIFTGKTEKKGTHRGT 301
                 +    K G   K  F+  GG + ++     ++  I    I             +
Sbjct: 179 VSLLDMR----KGGSTGKVIFFSSGGTEEFVAYLDRSKQPIHPSPIRILGGVDSIVMDIS 234

Query: 302 VEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359
           ++W  ++      +  + N I   +GGTH + LR A+TR +  Y        K  + +  
Sbjct: 235 IQWNDSY---YENVLCFTNNIKQKDGGTHLAALRSAMTRVMHNYIVKENLIKKEKVVVSG 291

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           +D+      ILSV + +P+F+ QTK KL+S + +  +E  + D    +L +NP  A  + 
Sbjct: 292 EDVREGLTAILSVKLPDPKFSSQTKEKLISSEVKPVIEKVVSDALASWLEENPSAARVIA 351

Query: 420 EWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
           + V+E +  R   +K R+   RK  +    LPGKLADC +     +EL IVEGDSAGGSA
Sbjct: 352 KKVVESALAREAAKKARDLTRRKGGLEITTLPGKLADCQEKSPELSELLIVEGDSAGGSA 411

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537
           KQ R+R  QAVLPLRGKILNV      K+  + +I +L+ ALG      ++  + +RY K
Sbjct: 412 KQGRDRKTQAVLPLRGKILNVEKTRFHKVIGSAEIGNLIAALGTSIGEEEFNIDKIRYHK 471

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           VIIMTDADVDG HI +LLLTFF++    ++E+ +L++   PL+++ +    VY  D+   
Sbjct: 472 VIIMTDADVDGLHIRTLLLTFFFRYARPIVERGYLYIAQTPLYKVMRKGTDVYLRDDAAL 531

Query: 598 QKILEEFKKHGK 609
           ++ L E    GK
Sbjct: 532 EEYLLERIIKGK 543



 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 7/97 (7%)

Query: 592 HDEEHKQKILEEFKKHG---KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648
            + +    +L   +      +  + + RFKGLGEM   QL  T +D + RT+ +V I + 
Sbjct: 665 FNNKEYYSVLAFVRDADSAARAGMVLQRFKGLGEMNPEQLWSTTLDPSNRTIFKVTIEE- 723

Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
                      + LMG     R  FI   A    ++ 
Sbjct: 724 ---AAVADQMCSMLMGDAVGPRRDFIVNNALNASNID 757


>gi|313199780|ref|YP_004038438.1| DNA gyrase subunit B [Methylovorus sp. MP688]
 gi|312439096|gb|ADQ83202.1| DNA gyrase, B subunit [Methylovorus sp. MP688]
          Length = 762

 Score =  428 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 200/533 (37%), Positives = 307/533 (57%), Gaps = 20/533 (3%)

Query: 77  LFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN-HP--KFPNKSTLEII 133
           +  EV+DNA+DE +AG+ + I+V +  +  ++V DNGRGIP +  H   K   +S  EI+
Sbjct: 1   MVFEVLDNAIDEALAGHCDDIKVIIHPDNSVSVSDNGRGIPTDIKHDDIKAVKRSAAEIV 60

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           +T LHAGGKFD ++Y++SGGLHGVG+SVVNALSD L + + R   +   +F RG  ++PL
Sbjct: 61  MTELHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLKLKIYRNGQVHQMEFRRGEAVAPL 120

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
                   ++GT + F    + FG    F    L K  +  ++L+  VK      +    
Sbjct: 121 AITG-TTERKGTEVHFLASIETFGLV-EFHFEILAKRIRELSFLNNGVKIELIDQR---- 174

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
                + E F   GG++ +++    +++++  + F    EK G    T+E ++ W +   
Sbjct: 175 ---NGKSENFAHSGGVRGFVEYMNRSKTVLHPKPFYAVGEKDG---MTIEVSMQWNDSYA 228

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
             +  + N I   +GGTH +GLR A+TR +  Y E  +   K  I    DD+      +L
Sbjct: 229 ETVQCFTNNIPQRDGGTHLTGLRTAMTRTLNNYIEQNELAKKAKIETTGDDMREGLTCVL 288

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV + EP+F+ QTK KLVS + Q  V+  +      +L++NP++A  +   +I+ +  R 
Sbjct: 289 SVKVPEPKFSSQTKDKLVSGEVQPVVQEVVAAKLAEFLLENPVDAKVICNKIIDAARARD 348

Query: 431 RRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK      RK A+  + LPGKLADC +      EL++VEGDSAGGSAKQ R+R  QA+
Sbjct: 349 AARKAREMTRRKGAMDTMGLPGKLADCQERDPTKCELYLVEGDSAGGSAKQGRDRKFQAI 408

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDG 548
           LPL+GKILNV  A  +K+ ++Q+I  L+ A+G          + LRY ++IIMTDADVDG
Sbjct: 409 LPLKGKILNVEKARFDKLLSSQEIATLITAMGTGIGKDDFSADKLRYHRIIIMTDADVDG 468

Query: 549 AHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           AHI +LLLTFFY++M  L+E+ H+++  PPL+++ QG    Y  D++   + L
Sbjct: 469 AHIRTLLLTFFYRQMTQLVERGHIYIAQPPLYKVKQGKDERYLKDQQELDQYL 521



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G KS    +    +  L+   +  K  + I R+KGLGEM   QL ET MD   R LL
Sbjct: 665 IKRGEKSQPVSN---FKAALDWLLEEAKHNLNIQRYKGLGEMNPEQLWETTMDPTVRRLL 721

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V+I+  +       +    LMG + + R  FI+  A  ++++ 
Sbjct: 722 KVQIDDAI----AADEIFTTLMGDQVEPRRAFIESNALGVNNLD 761


>gi|72388565|gb|AAZ67926.1| DNA gyrase subunit B [Psychrobacter fozii]
          Length = 729

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 197/531 (37%), Positives = 319/531 (60%), Gaps = 18/531 (3%)

Query: 76  HLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILT 135
           H+  EV+DN++DE +  Y + I++ +  +  ++V+DNGRG+PV+ HP+    S  ++I+T
Sbjct: 3   HMVFEVVDNSIDEALPWYCDQIDIIIHEDESVSVMDNGRGVPVDIHPE-EGVSAAQVIMT 61

Query: 136 TLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK 195
            LHAGGKFD+++Y++SGGLHGVGISVVNALS +L + + R+   ++Q ++ G+P + +++
Sbjct: 62  VLHAGGKFDDNSYKVSGGLHGVGISVVNALSKKLEMNIWREGYHYNQTYTDGVPDADIQQ 121

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
            E   N+ GT+I F P   +F     F+   L K  +  ++L+  V+   + ++      
Sbjct: 122 MEAT-NQTGTQIRFYPSSDVFTGTI-FEYDILAKRLRELSFLNSGVRIVLTDER------ 173

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PE 314
            I ++ EF   GGL  ++      +  ++        +  G    +VE A+ W +    +
Sbjct: 174 -IDKRHEFEHKGGLLEFVSYINAGKDGVNEVFHFTSQQDDGI---SVEVALQWTDTYNEK 229

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSV 372
           +  + N I   +GGTH SG R ALTR +  Y +      K  ++   DD       I+SV
Sbjct: 230 VLCFTNNIPQKDGGTHLSGFRSALTRCLNSYMDRENLFKKEKVAATGDDAREGLTAIVSV 289

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
            + +P+F+ QTK KLVS + +  VE+A+ D F+ YL++NP     +   +I+ +  R   
Sbjct: 290 KVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDYLLENPSAGKAIASKIIDAARARDAA 349

Query: 433 RKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           RK      RKT +    LPGKLADC +     +EL+IVEGDSAGGSAKQ R+R  QA+LP
Sbjct: 350 RKAREMTRRKTTLDIAGLPGKLADCQEKDPVLSELYIVEGDSAGGSAKQGRSRKTQAILP 409

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAH 550
           L+GKILNV  A  +K+ ++ ++ +L+ ALGC     +Y  + +RY K+IIMTDADVDG+H
Sbjct: 410 LKGKILNVERARFDKMLSSAEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTDADVDGSH 469

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           I +LLLTFF+++  +LIE+ ++++  PPL+++ +G + +Y  D+E  +  L
Sbjct: 470 IRTLLLTFFFRQTPELIERGYVYIAQPPLYKVKKGRQELYLKDDEALKAYL 520


>gi|4033395|sp|O33367|GYRB_MYXXA RecName: Full=DNA gyrase subunit B
 gi|2578422|emb|CAA04176.1| DNA gyrase B subunit [Myxococcus xanthus]
          Length = 815

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 212/600 (35%), Positives = 311/600 (51%), Gaps = 46/600 (7%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86
            E   +   A       Y   SI  LEG E VR RPGMYIG T    LH L  EV+DNA+
Sbjct: 1   MEKTPATGSAVAPPPVEYGTDSITKLEGREAVRKRPGMYIGDTMAYGLHKLVYEVVDNAV 60

Query: 87  DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146
           DE +AG+   IEV +  +G L+V DNGRGIPV  HPKFP K TLE++LT LHAG KF N 
Sbjct: 61  DESLAGHCTDIEVVIHVDGSLSVQDNGRGIPVGPHPKFPGKDTLEVVLTELHAGSKFGNG 120

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
            Y++SGGLHGVG++ VN LS+   V V R   ++ Q +++G+P +P  +     +KRGT 
Sbjct: 121 AYKVSGGLHGVGVTCVNFLSEWFKVRVHRNGIVYEQAYAQGVPDTPPREVG-TTDKRGTH 179

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F+PD  +      F+   L +  +  A+L+  +      ++   E         F F 
Sbjct: 180 IAFKPDATVMEL-VEFNFETLSQRLRELAFLNAGLHIVVRDERTNKEHD-------FKFD 231

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+ ++++   +++  +  +  +  TE++G     ++ A+ W +     I ++ N I T 
Sbjct: 232 GGISSFVEYLNKSKQTLHDKPISFSTEREGVM---LDIAMQWNDGYDERIYTFANNINTH 288

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQT 383
           EGG+H SG + ALTR +  YAE     + +      +D       ++SV +  P+F GQT
Sbjct: 289 EGGSHLSGFKAALTRTLNSYAEKGSLWKDLKETPTGEDAREGLSAVISVKLTNPQFEGQT 348

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKT 442
           KTKL + + +  VE  + D    +L + P+ A K++  +          R+ +  V RK 
Sbjct: 349 KTKLGNSEVKGLVEQMVNDQLGSFLEETPMVAKKVVAKIGDACRARLAARKARETVRRKG 408

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
            +    LPGKLADC     + +EL+IVEGDSAGGSAKQ R+R NQA+LPLRGKILNV   
Sbjct: 409 VLDGGGLPGKLADCQIRDPNESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKL 468

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY- 560
              ++  + +I+ L+ ALG       Y  E  RY ++ +MTDADVDG+HI +LLLT    
Sbjct: 469 -LREMLTSAEIVTLITALGNGIGAEDYDPEKARYHRIFLMTDADVDGSHIRTLLLTSSSG 527

Query: 561 -------------QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607
                        +                  +++T+  K  Y  DE    + L +    
Sbjct: 528 RCRSSCRRAISTSRSRRS--------------YKVTRNKKDQYVKDEHALNEYLLKIASE 573



 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 7/102 (6%)

Query: 584 QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRV 643
           +G   +     +    +L   +K  +  + + R+KGLGEM   QL +T M+   RTLL+V
Sbjct: 720 RGRGEITVFSVQE---VLAAVRKDAQRGLGLQRYKGLGEMNPEQLWDTTMNPATRTLLQV 776

Query: 644 EINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +   + S     +  + LMG   + R +FI+  A  + ++ 
Sbjct: 777 RVEDAVES----DEIFSLLMGEAVEPRREFIERNALDVQNLD 814


>gi|146300228|ref|YP_001194819.1| DNA topoisomerase IV subunit B [Flavobacterium johnsoniae UW101]
 gi|146154646|gb|ABQ05500.1| DNA topoisomerase, type IIA, subunit B, region 2 domain protein
           [Flavobacterium johnsoniae UW101]
          Length = 622

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 197/667 (29%), Positives = 319/667 (47%), Gaps = 76/667 (11%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           + Y   +IR L+  E +RMRPGMYIG      + +  ++ L  EV+DN +DE + G    
Sbjct: 5   NQYTEDNIRSLDWKEHIRMRPGMYIGKLGDGSSPDDGIYILLKEVLDNCIDEFVMGSGKT 64

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV++  +  ++V D GRGIP+           +  +++ ++ GGK+D+  ++ S GL+G
Sbjct: 65  IEVTI-KDKTVSVRDYGRGIPLGK---------VVDVVSKMNTGGKYDSKAFQKSVGLNG 114

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG   VNALS    V   R +   + +FS G  +S  E       ++GT++TF PD  IF
Sbjct: 115 VGTKAVNALSTYFRVESVRDDKQKAAEFSGGNLVSE-EDVIDTTKRKGTKVTFTPDETIF 173

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   F    ++KM ++  YL+  +   ++ +K             +Y   GL+  L+  
Sbjct: 174 KNY-KFRLEYVIKMVKNYCYLNNGLTIIFNGEK-------------YYSENGLRDLLEET 219

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRV 336
           +    L    I   +      H   V    +  + + E  S+ N   T +GGTH +  R 
Sbjct: 220 ISEEDLEYPIIHLKE------HDIEVALTHSKTQYSEEYHSFVNGQNTTQGGTHLAAYRE 273

Query: 337 ALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA---- 392
           A+ + I+++          +  + D+  S V  +S+ + EP F  QTKTKL S D     
Sbjct: 274 AVVKTIREFYN-------KNFEASDVRKSIVSAISIKVMEPVFESQTKTKLGSTDMGSDD 326

Query: 393 -------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIR 445
                  +  V + ++   D+YL +NP  A  LL  +++   ER      R++    A +
Sbjct: 327 GTPAVSVRTFVNDFIKTKLDNYLHKNPTTADALLRKILQAERERKELSGIRKLATDRAKK 386

Query: 446 KLRLPGKLADC-------SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
                 KL DC              + LFI EGDSA GS  ++R+ + QAV  LRGK LN
Sbjct: 387 ANLHNKKLRDCRAHLPDTKNPRNLESTLFITEGDSASGSITKSRDVNTQAVFSLRGKPLN 446

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
                 + +  N++   L  AL          E LRY  ++I TDADVDG HI  LL+TF
Sbjct: 447 SYGMTKKIVYENEEFNLLQAALDIEDGL----EKLRYNNIVIATDADVDGMHIRLLLITF 502

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           F Q   +LI++ HL+++  PLFR+    +++Y + +E ++  +E+     K K EI+RFK
Sbjct: 503 FLQFFPELIKEGHLYILQTPLFRVRNKKETIYCYSDEERKDAIEKL----KPKPEITRFK 558

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           GLGE+   + K    D     L  V ++K+       +  ++  MG    +R +FI +  
Sbjct: 559 GLGEISPDEFKNFIGD--TIRLDPVMMDKNT----SIEQLLSFYMGKNTPDRQEFIIKNL 612

Query: 679 S-FIDDV 684
              ID++
Sbjct: 613 KVEIDEL 619


>gi|315940109|gb|ADU56233.1| DNA gyrase subunit B [Nocardia jejuensis]
          Length = 576

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 205/584 (35%), Positives = 316/584 (54%), Gaps = 39/584 (6%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIG T E+ LHHL  EV+DN++DE +AGYA  ++V+L  +G + VVD+GRGIPV  H +
Sbjct: 1   MYIGSTGERGLHHLIWEVVDNSVDEAMAGYATRVDVTLLADGGVEVVDDGRGIPVAMHAQ 60

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
                T+E+++T LHAGGKFD+ +Y +SGGLHGVGISVVNALS  L   V      ++Q+
Sbjct: 61  --GVPTIEVVMTQLHAGGKFDSDSYAVSGGLHGVGISVVNALSTRLEADVDVDGYHWTQE 118

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           +    P      +     + GT I F  DP IF     ++   + +  Q  A+L+  +  
Sbjct: 119 YKDSKPGKL--VQGDATKRTGTTIRFWADPNIFETTT-YNFETVARRLQEMAFLNKGLTI 175

Query: 244 CWSCDKEIAEK-----------------------YGIPEKEEFYFPGGLKTYLQTKLENR 280
             + ++                                +   +++PGGL+ Y++     +
Sbjct: 176 TLTDERVAENDVTDEVVSDTAEAPKHADENAPAPTPKVKNRTYHYPGGLEDYVKHINRTK 235

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + I + I +   +  G     +E A+ W       + ++ NTI T EGGTHE G R ALT
Sbjct: 236 TPIHNSIVSFSGKGTGH---ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALT 292

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
             + KYA+  +  +    ++  DD+      I+SV + EP+F GQTKTKL + D +  V+
Sbjct: 293 TVVNKYAKDKKLLKEKDGNLTGDDIREGLAAIVSVKVSEPQFEGQTKTKLGNTDVKGFVQ 352

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
            A  +   H+   NP +A  +++  +  ++ R+  RK RE V RK+A     LPGKLADC
Sbjct: 353 RACNEHLTHWFEANPADAKTIMQKAVSSAQARMAARKARELVRRKSATDLGGLPGKLADC 412

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
                  +E++IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  +
Sbjct: 413 RSKDPKLSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSI 472

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A G     ++    LRY K+++M DADVDG HI++LLLT  ++ M  L+E  H++L  
Sbjct: 473 ITAFGTGIHDEFDIAKLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLVEHGHVYLAQ 532

Query: 577 PPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIE---ISR 616
           PPL+++     +  +A+ +  +  +LE     GK   +   I R
Sbjct: 533 PPLYKLKWQRTEPEFAYSDRERDGLLEAGLAAGKKINKDDGIQR 576


>gi|261211527|ref|ZP_05925815.1| topoisomerase IV subunit B [Vibrio sp. RC341]
 gi|260839482|gb|EEX66108.1| topoisomerase IV subunit B [Vibrio sp. RC341]
          Length = 551

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 206/567 (36%), Positives = 305/567 (53%), Gaps = 21/567 (3%)

Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178
           + HP+    S +E+IL  LHAGGKF N  Y+ SGGLHGVGISVVNALS  + V V R   
Sbjct: 2   DIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVAVRRDGQ 60

Query: 179 IFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
           ++   F  G  ++ L       R   GT + F PD K F     F  +RL+   ++KA L
Sbjct: 61  VYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSPN-FSVSRLVNNLRAKAVL 119

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
              ++  ++      E         + +  GLK YL   ++  +L+  E FTG+   +  
Sbjct: 120 CPGLEIIFTDKVNNNE-------HRWLYEDGLKDYLAEGVKGYTLLPEEPFTGEFTAQTE 172

Query: 298 HRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAIS 356
              T               SY N I T +GGTH +GLR  L   ++++ E      R + 
Sbjct: 173 A-ATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNLLPRGVK 231

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           +  +D+      +LS+ +++P+FAGQTK +L S  +   V   ++D F  +L + P  A 
Sbjct: 232 LTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAFSLWLNEKPQLAE 291

Query: 417 KLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           +L E  I  +  R+R    ++V RK       LPGKL DC+    + TELF+VEGDSAGG
Sbjct: 292 QLAEVCIANAHSRMR--ASKKVVRKKIASGPALPGKLTDCTVQDLNRTELFLVEGDSAGG 349

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAKQAR+R  QAV+PLRGKILN     ++++  +Q++ D+  ALG    +   E  LRY 
Sbjct: 350 SAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVALGIDPDNDNLEA-LRYG 408

Query: 537 KVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEH 596
           KV I+ DAD DG HIA+LL   F +    L++  H+++  PPL+RI  G +  YA D++ 
Sbjct: 409 KVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRIDCGKEVFYALDDQE 468

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
           K+ +LE   +  K K+ + RFKGLGEM   QL+ET MD N R L+++ I+      + T 
Sbjct: 469 KEGVLERLSQK-KAKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDD----AEATD 523

Query: 657 DSINKLMGTK-ADERFKFIQERASFID 682
           + ++ L+G K AD+R  ++Q      +
Sbjct: 524 EMMDMLLGKKRADDRRTWLQRNGDMAE 550


>gi|307692621|ref|ZP_07634858.1| DNA gyrase subunit B domain protein [Ruminococcaceae bacterium D16]
          Length = 661

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 175/671 (26%), Positives = 295/671 (43%), Gaps = 38/671 (5%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            A + AS  Y   SI  L+G + VR RPG+  G    +   H   E++ NA+DE   G+ 
Sbjct: 1   MAQKKAS--YGNESISALKGADRVRKRPGVIFGSDGLEGCEHAVFEIMSNAIDEAREGHG 58

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF--DNSTYEISG 152
           +LI V+   +  + V D GRG PV+ + K   K   E++   L+AGGK+  D   YE S 
Sbjct: 59  SLITVTRFLDKSIQVEDQGRGCPVDWNEK-EQKYNWELVFCELYAGGKYGGDGDNYEYSL 117

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK-KEKVRNKRGTRITFRP 211
           GL+G+G       S+    T+ R    +S  F +G  +  L+K       K G+   ++P
Sbjct: 118 GLNGLGSCATQYASEFFDATIWRDGFKYSLHFEKGENVGGLKKEPTDRGKKTGSTFRWKP 177

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           D ++F D           + + +A ++  V   +  +    +         F +  G+  
Sbjct: 178 DLEVFTD-IDIPVDYYTDVMKRQAVVNAGVTFRFKEETTPGKFTTTD----FQYENGILD 232

Query: 272 YLQTKLENRSLISSEIFTGK-----TEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDE 326
           Y+        L     +  +      + K  ++  +  +  +      +  Y N+   + 
Sbjct: 233 YVTELAGEDPLTQPVFWQTERKGRDRDDKPEYKVKLSVSFCFSNRVSLVEHYHNSSWLEH 292

Query: 327 GGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GG+ E  ++ A    I  Y +      K    I  +D+  + V + + F  +  +  QTK
Sbjct: 293 GGSPEKAMKSAFVSAIDAYLKQQGKYQKNEAKITFNDVQDALVLVSNNFSTQTSYENQTK 352

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR---EVNRK 441
             + +   Q  +   LR   + Y ++NP +A K+ E V+     R    + R   +    
Sbjct: 353 KAINNKFVQEAMTEFLRSQLEVYFIENPFDAQKIAEQVLVNKRSRETAERTRLNIKKKLT 412

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            ++       K   C       +EL+IVEGDSA GS K AR+   QA++P+RGKILN   
Sbjct: 413 GSMDISNRVQKFVPCRTKDIERSELYIVEGDSALGSVKLARDGEFQAIMPIRGKILNCLK 472

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREED---------LRYEKVIIMTDADVDGAHIA 552
           A   KI  +  I DL++ LGC      +            LR+ K++I TDADVDG  I 
Sbjct: 473 ADYGKIFKSDIITDLLKVLGCGVEVHDKRAKDLATFDLANLRWNKIVICTDADVDGFQIR 532

Query: 553 SLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612
           +L+LT  Y+    LI+Q ++++   PL+ IT   K+ +A+ ++ K  I+   +     K 
Sbjct: 533 TLVLTMLYRLTPTLIQQGYVYIAESPLYEITCKEKTWFAYSDKEKNDIVATLEG---KKY 589

Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
           +I R KGLGE     +  T M+   R L++V        ++ T    + L+G     R  
Sbjct: 590 DIQRSKGLGENEPDMMWLTTMNPATRRLIKVM----PEDVERTAQVFDLLLGDDLAGRKN 645

Query: 673 FIQERA-SFID 682
            I +    +++
Sbjct: 646 HIADNGYKYLE 656


>gi|148927748|ref|ZP_01811183.1| DNA topoisomerase (ATP-hydrolyzing) [candidate division TM7
           genomosp. GTL1]
 gi|147886902|gb|EDK72437.1| DNA topoisomerase (ATP-hydrolyzing) [candidate division TM7
           genomosp. GTL1]
          Length = 572

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 221/587 (37%), Positives = 333/587 (56%), Gaps = 38/587 (6%)

Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
           HPK   KSTLE +LT LHAGGKF    Y++S GLHGVG SVVNALS +L   V +   ++
Sbjct: 1   HPK-TGKSTLETVLTVLHAGGKFGGGGYKVSSGLHGVGSSVVNALSSKLVAEVHKDGKLY 59

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
            Q++ RG+P++ LE   K    +GT  TF PDP IF      D   ++   + +AYL+  
Sbjct: 60  RQEYERGVPVTKLEVVGKTAKNQGTTTTFYPDPDIFEAV-DLDYKWVVDYLRHQAYLTKG 118

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
           V    S ++         E+  FYF GG+++Y++     + ++S +IF  + +       
Sbjct: 119 VFVSVSDERS-------GERIAFYFEGGIQSYVKHLNIGKDILSDDIFYVERQ---VEDC 168

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISI 357
            VE A+ + +     + ++ N +   +GGTH  G R ALTR I  YA  +    ++  ++
Sbjct: 169 IVEVAVQYNDTYVETVKAFANNVYNPDGGTHLIGFRAALTRVINDYARKSGLLKEKEENL 228

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+ V + +P+F GQTK KL + + +R VE  + + F +YL ++P  A K
Sbjct: 229 TGDDIREGLTAIILVKLPDPQFEGQTKNKLGNPEMRRYVEQVMNEYFAYYLEEHPNTAKK 288

Query: 418 LLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   +  +  R   R     V RK A+  L LPGKLADCS      +EL+IVEGDSAGG
Sbjct: 289 IINKALLAARARKAARAARENVIRKGALDGLSLPGKLADCSSKDPKDSELYIVEGDSAGG 348

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGK+LNV  A  +++ NN +I+ L++A+G     Q+    LRY+
Sbjct: 349 SAKSGRDSKTQAILPLRGKVLNVERARLDRMLNNNEIVSLIKAMGVGIDEQFDINGLRYD 408

Query: 537 KVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEH 596
           ++IIMTDADVDG HIA+LL+TFF++ M ++++  H++L  PPLF +  G+K  YA+ +E 
Sbjct: 409 RIIIMTDADVDGNHIATLLMTFFFRYMREVVDGGHIYLAKPPLFLVRAGSKKYYAYSDEE 468

Query: 597 KQKILEEFKKHGK---GKIE-------------ISRFKGLGEMLASQLKETAMDANKRTL 640
           + +I+++  K  K    KI+             + R+KGLGEM A QL ET M+   R L
Sbjct: 469 RGQIIDDLVKERKERGTKIDEGADRNKQAGVTLLQRYKGLGEMDAEQLWETTMNPENRVL 528

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI--DDVG 685
           ++V+I       +       KLMG + + R  FIQ RA F+  +D+ 
Sbjct: 529 VQVKIED----AEKADAIFTKLMGDEVELRKHFIQSRAKFVNTEDLD 571


>gi|288561854|gb|ADC53563.1| DNA gyrase subunit beta [Acidovorax citrulli]
          Length = 764

 Score =  426 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 213/581 (36%), Positives = 314/581 (54%), Gaps = 49/581 (8%)

Query: 62  PGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           PGMYIG T D   LHHL  EV+DN++DE +AG+ + I V++  +  ++VVDNGRGIP   
Sbjct: 1   PGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHSDNSISVVDNGRGIPTGV 60

Query: 121 ---HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN 177
                  P +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV R  
Sbjct: 61  KMDDKHEPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKMLRLTVRRDG 120

Query: 178 TIFSQKFSRG------------IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225
            +   +FS+G            + +SP+    +  +KRGT + F PD +IF +   F   
Sbjct: 121 KVHLLEFSQGFVQSRILETVNGVEVSPMRVTGET-DKRGTEVHFLPDTEIFKENNDFHYE 179

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
            L K  +  ++L+  V+     ++   E         F   GG+  ++Q    ++ ++  
Sbjct: 180 ILAKRLRELSFLNNGVRIRLKDERTGKEDD-------FSGAGGVMGFVQFINASKKVLHP 232

Query: 286 EIFTGKTEKKGTH-------RGTVEWAIAWCEENPEITSYCNTILTDEGGT---HESGLR 335
             F     +              VE A+ W +   E   + +   T    T     +GLR
Sbjct: 233 NAFHATGSRPAETYGGIPGTEIGVEVAMQWNDGFNESRCFASPPTTSPHATAAPTLTGLR 292

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            A+TR I KY E  +   K  + +  DD+      +LSV + EP+F+ QTK KLVS + +
Sbjct: 293 AAMTRVIGKYIEQNELAKKAKVEVSGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVR 352

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGK 452
             VE+ +      YL + P +A  L   ++E +  R   RK RE+ R+   +  + LPGK
Sbjct: 353 APVEDIVAKALTDYLEERPNDAKILCGKIVEAARAREAARKAREMTRRKGVLDGMGLPGK 412

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +     +E++IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  EK+  + +
Sbjct: 413 LADCQEKDPALSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARYEKLLTSNE 472

Query: 513 IMDLVQALGCRT------------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           I+ L+ ALG                  +  + LRY ++IIMTDADVDGAHI +LLLTFFY
Sbjct: 473 ILTLITALGTGIGKASADGTGKGGADDFNVDKLRYRRIIIMTDADVDGAHIRTLLLTFFY 532

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++M +L+E+ H+++  PPL+++  G + +Y  D       L
Sbjct: 533 RQMPELVERGHIYIAQPPLYKVKNGKEELYLKDGPALDTFL 573


>gi|71725920|gb|AAZ39078.1| gyrase subunit B [Exiguobacterium aurantiacum]
          Length = 512

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 208/521 (39%), Positives = 298/521 (57%), Gaps = 14/521 (2%)

Query: 62  PGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENH 121
           PGMYIG T  + LHHL  E++DN++DE +AG+   I V+++    + V D+GRGIPV+  
Sbjct: 2   PGMYIGSTSSRGLHHLVWEIVDNSIDEALAGHCETITVTVEPGNSIVVEDDGRGIPVDIQ 61

Query: 122 PKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFS 181
            K   +  +E+I T LHAGGKF    Y++SGGLHGVG SVVNALS +L V V R   ++ 
Sbjct: 62  KK-TGRPAVEVIFTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTKLEVFVRRNGNVYY 120

Query: 182 QKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241
           Q F RG+P   LE      +K GT + F PD  IF +   +D   L    +  A+L+  +
Sbjct: 121 QSFKRGVPQGELEIVG-TTDKTGTTVRFFPDGDIFEETLEYDFDLLATRLRELAFLNKGL 179

Query: 242 KTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
           +     ++          +  +++ GG+K+Y++    ++S I  E       K G     
Sbjct: 180 RIIAKDER-----GDETIERNYHYEGGIKSYVEHLNRSKSSIHEEPVYVHGTKDGI---E 231

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SII 358
           VE A+ + E     I S+ N I T EGGTHE+G + ALTR I  YA+     +    S+ 
Sbjct: 232 VEIALQYNEGFASNIYSFTNNIPTHEGGTHETGFKTALTRSINDYAKRFGLMKEADGSLS 291

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+      I+SV    P+F GQTKTKL + DA+   ++   D F+ +L++NP     +
Sbjct: 292 GDDVREGLTAIVSVKHPSPQFEGQTKTKLGNADARTATDSLFTDTFEQFLLENPSVGRLI 351

Query: 419 LEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           ++  ++        +R +    RK  +    LPGKLADCS   A  +EL+IVEGDSAGGS
Sbjct: 352 VDKGLMAARARLAAKRAREMTRRKGILEVSSLPGKLADCSSKDASKSELYIVEGDSAGGS 411

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  R+R  QA+LP+RGKI+NV  A  +KI  NQ++  ++ ALG     ++     RY K
Sbjct: 412 AKSGRDRHFQAILPIRGKIINVEKARLDKILGNQEVRTIITALGTGIAEEFDLSKARYHK 471

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           +IIMTDADVDGAHI +LLLTFFY+ M  LIE  ++++  PP
Sbjct: 472 LIIMTDADVDGAHIRTLLLTFFYRYMRPLIESGYVYIAQPP 512


>gi|291529815|emb|CBK95400.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Eubacterium siraeum 70/3]
          Length = 667

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 189/673 (28%), Positives = 319/673 (47%), Gaps = 36/673 (5%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A  NYD +S++ L+G + VR+RPG+  G        H   E++ N++DE   G+   I V
Sbjct: 2   AKKNYDDNSLKQLKGPDQVRLRPGVIFGSDGLDGCCHSVFEILSNSIDEAREGFGKKIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLHG 156
           +   +  + V D GRGIP++ + K   K   E+   TL+AGGK+DN     Y  S GL+G
Sbjct: 62  TRFLDKSIEVQDYGRGIPIDFN-KNEEKYNWELAFCTLYAGGKYDNNSGDNYSYSLGLNG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE---KKEKVRNKRGTRITFRPDP 213
           +G+      ++ + V       I+  +F +G  +   E   ++ +     GT+I ++PD 
Sbjct: 121 LGLCSTQFAAEYMEVESNNGTWIYDLRFEKGYNVEKEERGFRRHQSDGTTGTKIKWKPDL 180

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE-FYFPGGLKTY 272
            +F D           + + +A ++  +      +    E      +E  + +  G+  Y
Sbjct: 181 DVFTD-IDVPFEYFDDVLRRQAVVNDGLTFVLRNEVRDEETGETHFEEHIYCYENGISDY 239

Query: 273 LQTKLENRSLISSEIFTG-----KTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEG 327
           L+  + + +L + ++++        E K  ++  ++ A  +  +   I  Y N+   + G
Sbjct: 240 LKEIVGDTALTTEQVWSAQRTGKDREDKPEYKVKMKVAFVFSNKVQLIQHYHNSSWLEHG 299

Query: 328 GTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           G+ +  ++ A T  I  +  A    NK    I   D+    V I S F  +  +  QTK 
Sbjct: 300 GSPDKAMQAAFTNQIDGWLKANSKYNKTEGKIKFTDIADCLVFISSNFSTQTSYENQTKK 359

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT--- 442
            + +   Q  + + L+   + Y ++NP EA K+ E V+     R    K R+  +K    
Sbjct: 360 SITNKFIQEAMTDWLKHQLEVYFLENPDEAVKICEQVLINKRARENAAKARDTIKKQLSG 419

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
            I       K  DC        EL+IVEGDSA G+ KQAR+   QAV+P+RGK LN   A
Sbjct: 420 KIDLANRIPKFVDCRSKDTARRELYIVEGDSALGAVKQARDADYQAVMPVRGKTLNCLKA 479

Query: 503 GSEKIRNNQQIMDLVQALGCRTR---------SQYREEDLRYEKVIIMTDADVDGAHIAS 553
             +KI  ++ I +L++ LGC            S +   +LR+EK+II TDAD DG  I +
Sbjct: 480 SYDKIFKSEIITNLMKILGCGVEVKAKANKDLSTFDLNNLRWEKIIICTDADYDGYQIRT 539

Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613
           L+LT  Y+ +  +IE+  +++   PL+ I     + +A+ E  KQ+IL +    G+ K +
Sbjct: 540 LILTMLYRLVPTVIEKGFVYIAESPLYEINSKDMTYFAYTEAEKQRILADI---GEQKYK 596

Query: 614 ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKF 673
           I R KGLGE     +  T M+   R L+RV         + TQ+    L+G   D R  +
Sbjct: 597 IQRSKGLGENEPEMMSLTTMNPETRRLIRVM----PEDAQKTQEIFELLLGDNLDGRKDY 652

Query: 674 IQERA-SFIDDVG 685
           I++    ++DD+ 
Sbjct: 653 IRDYGYKYLDDID 665


>gi|167749708|ref|ZP_02421835.1| hypothetical protein EUBSIR_00666 [Eubacterium siraeum DSM 15702]
 gi|167657331|gb|EDS01461.1| hypothetical protein EUBSIR_00666 [Eubacterium siraeum DSM 15702]
 gi|291556469|emb|CBL33586.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Eubacterium siraeum V10Sc8a]
          Length = 667

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 189/673 (28%), Positives = 319/673 (47%), Gaps = 36/673 (5%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A  NYD +S++ L+G + VR+RPG+  G        H   E++ N++DE   G+   I V
Sbjct: 2   AKKNYDDNSLKQLKGPDQVRLRPGVIFGSDGLDGCCHSVFEILSNSIDEAREGFGKKIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLHG 156
           +   +  + V D GRGIP++ + K   K   E+   TL+AGGK+DN     Y  S GL+G
Sbjct: 62  TRFLDKSIEVQDYGRGIPIDFN-KNEEKYNWELAFCTLYAGGKYDNNSGDNYSYSLGLNG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE---KKEKVRNKRGTRITFRPDP 213
           +G+      ++ + V       I+  +F +G  +   E   ++ +     GT+I ++PD 
Sbjct: 121 LGLCSTQFAAEYMEVESNNGTWIYDLRFEKGYNVEKEERGFRRHQSDGTTGTKIKWKPDL 180

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE-FYFPGGLKTY 272
            +F D           + + +A ++  +      +    E      +E  + +  G+  Y
Sbjct: 181 DVFTD-IDVPFEYFDDVLRRQAVVNDGLTFVLRNEVRDEETGETRFEEHIYCYENGISDY 239

Query: 273 LQTKLENRSLISSEIFTG-----KTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEG 327
           L+  + + +L + ++++        E K  ++  ++ A  +  +   I  Y N+   + G
Sbjct: 240 LKEIVGDTALTTEQVWSAQRTGKDREDKPEYKVKMKVAFVFSNKVQLIQHYHNSSWLEHG 299

Query: 328 GTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           G+ +  ++ A T  I  +  A    NK    I   D+    V I S F  +  +  QTK 
Sbjct: 300 GSPDKAMQAAFTNQIDGWLKANSKYNKTEGKIKFTDIADCLVFISSNFSTQTSYENQTKK 359

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT--- 442
            + +   Q  + + L+   + Y ++NP EA K+ E V+     R    K R+  +K    
Sbjct: 360 SITNKFIQEAMTDWLKHQLEVYFLENPDEAVKICEQVLINKRARENAAKARDTIKKQLSG 419

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
            I       K  DC        EL+IVEGDSA G+ KQAR+   QAV+P+RGK LN   A
Sbjct: 420 KIDLANRIPKFVDCRSKDTARRELYIVEGDSALGAVKQARDADYQAVMPVRGKTLNCLKA 479

Query: 503 GSEKIRNNQQIMDLVQALGCRTR---------SQYREEDLRYEKVIIMTDADVDGAHIAS 553
             +KI  ++ I +L++ LGC            S +   +LR+EK+II TDAD DG  I +
Sbjct: 480 SYDKIFKSEIITNLMKILGCGVEVKAKANKDLSTFDLNNLRWEKIIICTDADYDGYQIRT 539

Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613
           L+LT  Y+ +  +IE+  +++   PL+ I     + +A+ E  KQ+IL +    G+ K +
Sbjct: 540 LILTMLYRLVPTVIEKGFVYIAESPLYEINSKDMTYFAYTEAEKQRILADI---GEQKYK 596

Query: 614 ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKF 673
           I R KGLGE     +  T M+   R L+RV         + TQ+    L+G   D R  +
Sbjct: 597 IQRSKGLGENEPEMMSLTTMNPETRRLIRVM----PEDAQKTQEIFELLLGDNLDGRKDY 652

Query: 674 IQERA-SFIDDVG 685
           I++    ++DD+ 
Sbjct: 653 IRDYGYKYLDDID 665


>gi|291166441|gb|EFE28487.1| DNA gyrase B subunit [Filifactor alocis ATCC 35896]
          Length = 660

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 177/674 (26%), Positives = 306/674 (45%), Gaps = 40/674 (5%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              +  + +Y  +SI  L+G + VR+RP +  G    +   H   E++ NA+DE   G  
Sbjct: 2   KKEKKQNVDYGNNSISSLKGPDRVRLRPAVIFGSDGIEGCQHAMFEILSNAIDEAREGNG 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF---DNSTYEIS 151
             I V    +  +T+ D GRG P++ + K  N+   E+I   L+AGGK+       YE S
Sbjct: 62  TKINVIRHSDFSVTIEDFGRGAPLDFNEK-ENRYNYELIFEELYAGGKYNTNQGKNYEYS 120

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
            GL+G+G       S+ + V V R   ++   F +G  +  L+K++       T+I F+P
Sbjct: 121 LGLNGLGCCATQYSSEYMDVKVKRDGYLYQVHFEKGYSIGGLKKEKDSSPGTYTKIKFKP 180

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           D ++F D             + +A ++  V      +   +E         + +  G+  
Sbjct: 181 DTEVFTDIN-ITLEFYCDTLKRQAVINKGVSFHLFDEISNSE-------FSYCYENGIVD 232

Query: 272 YLQTKLENRSLISSEIFTGKT-----EKKGTHRGTVEWAIAWCEENPEITSYCNTILTDE 326
           Y+   + +  + S    + +T     E K  ++   +   A+  E   +  Y N+   + 
Sbjct: 233 YVNELIGDNYISSPHSVSLETKGRDREDKPFYKLKADICFAFSNEANRLEFYHNSSYLEH 292

Query: 327 GGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GG+ E   + A    +  Y +      K    I   D+  S + +++ F     +  QTK
Sbjct: 293 GGSPEKATKSAFVSAVDSYIKKLGKYYKNEKKISFSDIEDSLLLVINSFSTMTSYENQTK 352

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI 444
             + +   Q+ + + L++  + Y  +N  E  K+++ ++     R    K R   ++   
Sbjct: 353 KAITNKFIQQALTDFLKEQLEIYFTENQQEGEKIIDQILVNKHSRESAEKTRMAIKRNLK 412

Query: 445 RKLRL---PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
                     K  DC        EL+IVEGDSA GS KQ RN   QA++P+RGKILN   
Sbjct: 413 TTFDPLTRIKKFVDCRTKNPDERELYIVEGDSALGSCKQGRNSDFQAIIPIRGKILNCLK 472

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQ---------YREEDLRYEKVIIMTDADVDGAHIA 552
           + S +I  N  I D++  LG               +  ++LR+ K+II TDADVDG  I 
Sbjct: 473 SDSARIFANDIITDIISILGTGVEMNSKHLKDIADFNMDNLRWNKIIICTDADVDGFQIR 532

Query: 553 SLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612
           +LLLT FY     LIE+ ++++   PL+ I+   K+ +A+ E+ K+ IL +     KG  
Sbjct: 533 TLLLTMFYMLTPTLIEKGYIYIAESPLYEISSKNKTYFAYSEKEKEAILSKI----KGSY 588

Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
            + R KGLGE     + ET M+   R L++V       + +DT+ + + L+G     R +
Sbjct: 589 HVQRSKGLGENEPDMMWETTMNPETRRLIQVT----EYNPEDTKIAFDTLLGDDLQSRKE 644

Query: 673 FIQERAS-FIDDVG 685
           +I+     +++ V 
Sbjct: 645 YIENFGHLYLEQVD 658


>gi|289450647|ref|YP_003475279.1| DNA gyrase subunit B, C-terminal domain-containing protein
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289185194|gb|ADC91619.1| DNA gyrase, B subunit, C-terminal domain protein [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 662

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 185/672 (27%), Positives = 312/672 (46%), Gaps = 44/672 (6%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             YD +SI  L+G E VR+RPG+  G    +   H F E++ N++DE   GY ++I V  
Sbjct: 5   QQYDNASISSLKGAERVRLRPGVIFGSDSLEGCEHAFFEILSNSIDEAREGYGDVINVHR 64

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF---DNSTYEISGGLHGVG 158
             +  + V D GRGIP++ +PK  N+   E++   L+AGGK+   +   YE S GL+G+G
Sbjct: 65  YADNSIEVEDFGRGIPLDFNPK-ENRYNWELVYCELYAGGKYNTNNGENYEFSLGLNGLG 123

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
                  S+   V V R    +S  F +G  +  L K+     + GT   F PD ++F D
Sbjct: 124 ACATQYASEYFDVQVMRDGYKYSLHFEKGENVGGLSKEPTRFKRTGTIQHFLPDREVFTD 183

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
                     +  + +A ++  V   +  D          EK EF++  G++ Y+     
Sbjct: 184 -IAIPTEYFTETLKRQAVVNNGVHFNFIDD-------ITGEKYEFFYADGVRDYINELDA 235

Query: 279 NRSLISSEIFT------GKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHES 332
            R ++ + I+            K  ++     A+ +  E   +  Y N+   + GG+ + 
Sbjct: 236 GRGMLQNPIYFTASGQGQDRADKPMYKVKATVALTFNNEINGMEYYHNSSFLEHGGSPDK 295

Query: 333 GLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
            +R A+T    + A+     +     +  +D+  S + I+S F     +  QTK  + + 
Sbjct: 296 AVRSAITGEFDRQAKNMNKYKANESKLTFNDIQDSLLIIISSFSTSTSYENQTKKAINNK 355

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR---EVNRKTAIRKL 447
             Q  +   LR   + + ++   EA ++LE V+     R    KQR   +     ++   
Sbjct: 356 FIQDFLTEQLRSNLEIWFIERREEAERVLEQVLINKRSRENAEKQRLSIKKKLMGSVDIT 415

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
               K  DC     +  EL+IVEGDSA GS K  R+   QA++ +RGKILN   A    I
Sbjct: 416 NRIKKFVDCRTKDLNRRELYIVEGDSALGSCKLGRDAEFQAIIAVRGKILNCLKADLATI 475

Query: 508 RNNQQIMDLVQALGCRTRSQYREED---------LRYEKVIIMTDADVDGAHIASLLLTF 558
             ++ I +L++ LGC    + ++           LR++K+II TDADVDG  I +L+LT 
Sbjct: 476 FKSEIITNLIKVLGCGVEIKSKQNKELTAFDLNALRWDKIIICTDADVDGYQIRTLILTM 535

Query: 559 FYQEMYDLIEQKHLFLISPPLFRI--TQGTK--SVYAHDEEHKQKILEEFKKHGKGKIEI 614
           FY+ +  L+ +  +++   PLF I  T+G K  + +A++E+ K +I+         ++ I
Sbjct: 536 FYRLLPTLLAEGRVYIAESPLFEIVATKGRKEVTHFAYNEKEKAEIIRNL---AGYRLNI 592

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
            R KGLGE     + ET M+   R L++V       S    Q   + L+G     R + I
Sbjct: 593 QRSKGLGENEPEMMWETTMNPQTRRLIQVM----PESEDTMQAKFDLLLGDNLTGRKEHI 648

Query: 675 QERAS-FIDDVG 685
           +     ++D + 
Sbjct: 649 ENNGHLYLDQLD 660


>gi|229815925|ref|ZP_04446248.1| hypothetical protein COLINT_02980 [Collinsella intestinalis DSM
           13280]
 gi|229808478|gb|EEP44257.1| hypothetical protein COLINT_02980 [Collinsella intestinalis DSM
           13280]
          Length = 701

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 185/691 (26%), Positives = 312/691 (45%), Gaps = 44/691 (6%)

Query: 24  KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVID 83
               +   +   +    + NY   SIR L+  E VR+RP +  G        H   E++ 
Sbjct: 24  ATKTQKGTTERASMAKNTANYGNDSIRQLKDEERVRLRPAVIFGSDGLDGCAHAAFEILS 83

Query: 84  NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143
           NA+DE   GY  LI ++   +G + V DNGRG P++ +P    +   E++   L+AGGK+
Sbjct: 84  NAVDEARQGYGKLITLTAFRDGSIQVEDNGRGCPLDWNP-SEKRFNWELVFCELYAGGKY 142

Query: 144 DNST---YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL----EKK 196
           +N+    Y+ S G +G+G       S+ + VTV R    +S  F +G  +       E +
Sbjct: 143 NNNEGGDYDFSLGTNGLGSCATQYASEYMDVTVWRDGNKYSLHFKKGKVVGAKKKALEIE 202

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
               ++ GT I +RPD ++F            +  + +A ++  V      + +  E   
Sbjct: 203 PTDEHRTGTTIKWRPDLEVFTS-ISIPHDWYRETMRRQAVVNANVTFRLCIEGDDGE--- 258

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG-------THRGTVEWAIAWC 309
              +E+F +P G++ Y+  K+       +E F  + E++G        +   +   + + 
Sbjct: 259 -FTEEDFCYPKGIEDYVLEKVGAD--YLTEPFFIEAERRGRDREDLPDYNVKITACLCFS 315

Query: 310 EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                   Y N+   + GG+ E   R ALT  I  Y +     NK   SI   D+    V
Sbjct: 316 RTFQMQEYYHNSSWLENGGSPEKAARSALTSAIDAYIKQQGKYNKNESSIKWQDVQDCLV 375

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            + + F  +  +  QTK  + +   Q+ +    ++    YL++N   A K++E V+    
Sbjct: 376 LVTNCFSTQTSYENQTKKAINNRFIQQAMTAFFKERLATYLIENKDAANKIMEQVLINKR 435

Query: 428 ERLRRRKQREVNRKTAIRKLRLPGK---LADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
            R    K R+  +    +K  +  +     DC        E++IVEGDSA G+ + +R+ 
Sbjct: 436 SRENAEKTRQSIKTNLQQKTDMANRVQKFIDCRSKDKTRREVYIVEGDSAAGAIRTSRDA 495

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED---------LRY 535
             Q V+P+RGKILN       +I  +  IMDL++ LGC    + +            L +
Sbjct: 496 EFQGVMPVRGKILNCLKEDYPRIFKSDIIMDLMRVLGCGVEIKDKRIKNLGAFDLDNLNW 555

Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEE 595
            KVII TDADVDG HI +L+LT  Y+ +  LI++ ++++   PL+ I    K+ +A+ E 
Sbjct: 556 SKVIICTDADVDGYHIRTLILTMLYRLVPTLIDEGYVYIAESPLYEINCKEKTYFAYTEL 615

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
            K  IL E    G  K  I+R KGLGE     +  T M+   R L++V    +   +   
Sbjct: 616 EKNAILTEI---GDQKCSINRSKGLGENDPDMMWLTTMNPETRRLIKV----EPEDVAKM 668

Query: 656 QDSINKLMGTKADERFKFIQERAS-FIDDVG 685
           +   N L+G     R + I E    ++D + 
Sbjct: 669 ESMFNLLLGNDEAGRKRHIAEHGKEYLDQLD 699


>gi|210630764|ref|ZP_03296588.1| hypothetical protein COLSTE_00473 [Collinsella stercoris DSM 13279]
 gi|210160360|gb|EEA91331.1| hypothetical protein COLSTE_00473 [Collinsella stercoris DSM 13279]
          Length = 701

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 188/691 (27%), Positives = 315/691 (45%), Gaps = 44/691 (6%)

Query: 24  KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVID 83
               +   +   +    + NY   SIR L+  E VR+RP +  G        H   E++ 
Sbjct: 24  TTEAQRGTTERASMAKNTANYGNDSIRQLKDEERVRLRPAVIFGSDGLDGCAHAAFEILS 83

Query: 84  NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143
           N++DE   GY NLI ++   +G + V DNGRG P++ +P    +   E++   L+AGGK+
Sbjct: 84  NSVDEARQGYGNLITLTAFRDGSIQVEDNGRGCPLDWNP-SEKRFNWELVFCELYAGGKY 142

Query: 144 DNST---YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL----EKK 196
           +N+    Y+ S G +G+G       S+ + VTV R    +S  F +G  +       E +
Sbjct: 143 NNNEGGDYDFSLGTNGLGSCATQYASEYMDVTVWRDGNKYSLHFKKGKVVGAKKKALEIE 202

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
               N+ GT I +RPD ++F            +  + +A ++  V      + +  E   
Sbjct: 203 PTDENRTGTTIKWRPDLEVFTS-ISIPHEWYRETMRRQAVVNANVTFRLRIEGDDGE--- 258

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG-------THRGTVEWAIAWC 309
              +E+F +P G++ Y+  K+       +E F  +TE++G        +   +   + + 
Sbjct: 259 -FTEEDFCYPKGIEDYVLEKVGAD--YLTEPFFIETERRGRDREDLPDYNVKITACLCFS 315

Query: 310 EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMISAV 367
                   Y N+   + GG+ E   R ALT  I  Y  ++   NK   SI   D+    V
Sbjct: 316 RTFQMQEYYHNSSWLENGGSPEKAARSALTSAIDAYIKSQGKYNKNESSIKWQDVQDCLV 375

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            + + F  +  +  QTK  + +   Q+ +    ++    YL++N   A K++E V+    
Sbjct: 376 LVTNCFSTQTSYENQTKKAINNRFIQQAMTAFFKERLATYLIENKDAANKIMEQVLINKR 435

Query: 428 ERLRRRKQREVNRKTAIRKLRLPGK---LADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
            R    K R+  +    +K  +  +     DC        E++IVEGDSA G+ + +R+ 
Sbjct: 436 SRENAEKTRQSIKTNLQQKTDMANRVQKFIDCRSKDKTRREVYIVEGDSAAGAIRTSRDA 495

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED---------LRY 535
             Q V+P+RGKILN       +I  +  IMDL++ LGC    + +            L +
Sbjct: 496 EFQGVMPVRGKILNCLKEDYPRIFKSDVIMDLMRVLGCGVEIKDKRIKNLGAFDLDNLNW 555

Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEE 595
            KVII TDADVDG HI +L+LT  Y+ +  LI++ ++++   PL+ I    K+ +A+ E 
Sbjct: 556 SKVIICTDADVDGYHIRTLILTMLYRLVPTLIDEGYVYIAESPLYEINCKEKTYFAYTEL 615

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
            K  IL E    G  K  I+R KGLGE     +  T M+   R L++VE    +      
Sbjct: 616 EKNDILTEI---GDQKCSINRSKGLGENDPDMMWLTTMNPETRRLIKVEPEDVVK----M 668

Query: 656 QDSINKLMGTKADERFKFIQERAS-FIDDVG 685
           +   N L+G     R + I E    ++D + 
Sbjct: 669 ESMFNLLLGNDEAGRKRHIAEHGKEYLDQLD 699


>gi|315940111|gb|ADU56234.1| DNA gyrase subunit B [Nocardia jinanensis]
          Length = 576

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 203/585 (34%), Positives = 314/585 (53%), Gaps = 41/585 (7%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIG T E+ LHHL  EV+DN++DE +AG+A  +EV+L  +G + VVD+GRGIPV  H +
Sbjct: 1   MYIGSTGERGLHHLIWEVVDNSVDEAMAGHATKVEVTLLADGGVQVVDDGRGIPVAMHAQ 60

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
                T+E+++T LHAGGKFD+ +Y +SGGLHGVGISVVNALS  L   +      +SQ 
Sbjct: 61  --GIPTIEVVMTQLHAGGKFDSDSYAVSGGLHGVGISVVNALSSRLEAEIEVDGYHWSQT 118

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           +   +P      + +     GT I F  D  +F     ++   + +  Q  A+L+  +  
Sbjct: 119 YKDAVPGQL--VQGEPTKATGTTIRFWADSAVFETTT-YNFETVSRRLQEMAFLNKGLTI 175

Query: 244 CWSCDKEIAEK-----------------------YGIPEKEEFYFPGGLKTYLQTKLENR 280
             + ++    +                           +   +++PGGL+ +++     +
Sbjct: 176 VLTDERVSETEITDEVVSDTAEAPKHDDGEKPAVEQKVKTRTYHYPGGLEDFVRHINRTK 235

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
             I + + +   +  G     +E A+ W       + ++ NTI T EGGTHE G R ALT
Sbjct: 236 QPIHNSVVSFNGKGPGH---ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALT 292

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
             + +YA+  +  +    ++  DD+      I+SV + EP+F GQTKTKL + + +  V+
Sbjct: 293 TVVNRYAKEKKLLKEKDGNLTGDDIREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQ 352

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
            A  +   H+   NP +A  ++   +  ++ R+  RK RE V RK+A     LPGKLADC
Sbjct: 353 RACNEHLAHWFEANPADAKTIVNKAVSSAQARVAARKARELVRRKSATDIGGLPGKLADC 412

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
                  +E++IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  +
Sbjct: 413 RSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSI 472

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           + A G     ++    LRY K+++M DADVDG HI++LLLT  ++ M  LIE  H+FL  
Sbjct: 473 ITAFGTGIHDEFDIAKLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLIEHGHVFLAQ 532

Query: 577 PPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIE----ISR 616
           PPL+++        +A+ +  +  +LE     GK KI     I R
Sbjct: 533 PPLYKLKWHRVDPEFAYSDRERDGLLEAGLAAGK-KINKDDGIQR 576


>gi|72388581|gb|AAZ67934.1| DNA gyrase subunit B [Psychrobacter urativorans]
          Length = 741

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 194/526 (36%), Positives = 312/526 (59%), Gaps = 18/526 (3%)

Query: 81  VIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140
           V+DN++DE +A Y + I++ +  +  ++V DNGRG+PV+ HP+    S  ++I+T LHAG
Sbjct: 1   VVDNSIDEALALYCDQIDIIIHEDLSVSVSDNGRGVPVDIHPE-EGVSAAQVIMTVLHAG 59

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD+++Y++SGGLHGVG+SVVNALS  L + + R+   ++Q ++ G+P   +++ E   
Sbjct: 60  GKFDDNSYKVSGGLHGVGVSVVNALSKTLEMNIWREGYHYNQTYTDGVPDGDIQQMEAT- 118

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
           ++ GT+I F P   +F     F+   L K  +  ++L+  V+   + ++       I ++
Sbjct: 119 DRTGTQIRFYPSTDVFTGTI-FEYDILAKRLRELSFLNSGVRIVLTDER-------IDKR 170

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
            EF   GGL  ++      +  ++        +  G    +VE A+ W +    ++  + 
Sbjct: 171 HEFEHKGGLSEFVSYINAGKDNVNEIFHFNSEQDDGI---SVEVALQWTDTYNEKVLCFT 227

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH SG R ALTR +  Y +      K  +    DD       I+SV + +P
Sbjct: 228 NNIPQRDGGTHLSGFRSALTRCLNTYMDRENLFKKEKVVATGDDAREGLTAIVSVKVPDP 287

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-R 436
           +F+ QTK KLVS + +  VE+A+ D F+ YL +NP  +  +   +I+ +  R   RK   
Sbjct: 288 KFSSQTKDKLVSSEVKSAVESAMHDKFNDYLQENPGASKAIAGKIIDAARARDAARKARE 347

Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              RKT +    LPGKLADC +     +EL+IVEGDSAGGSAKQ R+R  QA+LPL+GKI
Sbjct: 348 MTRRKTTLDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRSRKTQAILPLKGKI 407

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLL 555
           LNV  A  +K+ ++ ++ +L+ ALGC     +Y  +  RY K+IIMTDADVDG+HI +LL
Sbjct: 408 LNVERARFDKMLSSAEVGNLITALGCGIGPDEYNPDKARYHKIIIMTDADVDGSHIRTLL 467

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           LTFF+++  +LIE+ ++++  PPL+++ +G + +Y  D+E  +  L
Sbjct: 468 LTFFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDDEALKAYL 513


>gi|34396100|gb|AAQ65247.1| DNA gyrase subunit B [Entomoplasma melaleucae]
          Length = 536

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 211/547 (38%), Positives = 313/547 (57%), Gaps = 16/547 (2%)

Query: 73  ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
            LHH+  E++DN++DE +AG+ N I + +     + + DNGRGIPV+ HPK   K+TLE 
Sbjct: 2   GLHHMIWEILDNSVDEALAGFCNEISIFITEKNEIIIQDNGRGIPVDIHPK-TGKTTLET 60

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
           I   LHAGGKFD STY++SGGLHGVG SVVNALS  +   + R   I+ QKFS G   + 
Sbjct: 61  IFNVLHAGGKFDESTYKVSGGLHGVGASVVNALSLYVEAIILRDEKIYHQKFSEGGTKAT 120

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
             K+  + +  G+ I F+PDP+IF +   FD   +    +  A+L+ ++K      +   
Sbjct: 121 KIKEIGISDSNGSIIKFKPDPEIFKETIEFDFKVIQGKIKQLAFLNKKLKLNLYDQR--- 177

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
                 +   + F  G+K Y++     +  +  EIF             VE +I + E  
Sbjct: 178 ----TDKFISYIFEDGIKDYIKEINSGKEKVHDEIFYISNSSNDI---EVEISIQYNETY 230

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILS 371
              + S+CN I T EGG+HE G + +L + I  Y   +++ +      DDL    V ++S
Sbjct: 231 DENVFSFCNNIFTSEGGSHEEGFKSSLIKSINSYVNNSKSFKGNKFTWDDLKEGIVSVIS 290

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           +  R+P + GQTK KL + DA+  V   L + F  +L++NP +A K++E ++   + R  
Sbjct: 291 IKHRDPLYEGQTKAKLSNNDAKEAVSEVLNESFKDFLLKNPNDAKKIIEKILISQKARKA 350

Query: 432 RRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            ++ RE   RK+AI    LPGKLADC        EL++VEGDSAGGSAK  RNR  QA+L
Sbjct: 351 AQRAREDTRRKSAIDNFSLPGKLADCESKDIEECELYLVEGDSAGGSAKTGRNRRTQAIL 410

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
            LRGK+LNV      K+ +N +I  ++ A+G   +     + LRY K+IIMTDADVDGAH
Sbjct: 411 SLRGKVLNVEKVKQSKVFDNNEIQSIIAAVGIGVKKDINLKKLRYGKIIIMTDADVDGAH 470

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGK 609
           I  LLLTFFY+ M +LI   ++++  PPL++I  G  ++ YA+++   +++ EE  K+ K
Sbjct: 471 IRVLLLTFFYRYMKELILNGNVYIAQPPLYKIDAGKNNMDYAYNDMELEQLKEE--KYNK 528

Query: 610 GKIEISR 616
            K  I R
Sbjct: 529 LKYTIQR 535


>gi|317133917|ref|YP_004089828.1| DNA gyrase subunit B domain protein [Ruminococcus albus 7]
 gi|315450379|gb|ADU23942.1| DNA gyrase subunit B domain protein [Ruminococcus albus 7]
          Length = 660

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 182/673 (27%), Positives = 309/673 (45%), Gaps = 44/673 (6%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +YD +SI  L+G + VR RPG+  G    +   H + E++ N++DE   GY + I   
Sbjct: 2   AASYDNNSISSLKGADRVRKRPGVIFGSNGLEGAQHAYFEILSNSIDEAKDGYGSKITTI 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF--DNSTYEISGGLHGVG 158
           L  +G ++V D+GRGIP+E + K  N+   E++   L+AGGK+  D + YE S GL+G+G
Sbjct: 62  LYEDGSISVQDHGRGIPLEFN-KTENRYNWELVYCELYAGGKYDVDGANYEYSLGLNGLG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPL-SPLEKKEKVRNKRGTRITFRPDPKIFG 217
                  S+   V V R    ++  F +G  +   ++KK K +++ GT   ++PD ++F 
Sbjct: 121 ACATQYASEYFDVEVVRDGYKYNLHFEKGENIGGLVKKKLKSKSETGTFQKWKPDLEVFT 180

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           D        LL + + +A ++  +  C                  +Y+  G+  Y++   
Sbjct: 181 DTN-ITYEYLLDVNKKQAMVNKGITFCIMDQSSDTNTE-------YYYENGIIDYIEEIS 232

Query: 278 ENRSLISSEIFTGKT-----EKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHES 332
           + +++ S     G       E    ++   E A A+  + P +  Y N+   + GG  + 
Sbjct: 233 DGKNISSPYYIEGSGTGRDREDLKEYKVKAEIAFAFNNDVPTLQYYHNSSFLEHGGAPDK 292

Query: 333 GLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
            ++ A      K  +     NK    I   D+  S + I++       +  QTK  + + 
Sbjct: 293 AVKSAFVAVFDKILKQRGKYNKGETKISFADIEDSLIVIVNSLSTMTSYENQTKKAINNK 352

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR---EVNRKTAIRKL 447
             Q  +   +++  + + ++N  ++ ++++ ++     R    KQR   +          
Sbjct: 353 FIQDFLTELIKERLEIWFIENAGDSNRVIDQILANKRSREASEKQRIALKRKLVGKSDSW 412

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
               K  DC        ELFIVEGDSA GS K  R+   QAV+P+RGKILN   +   KI
Sbjct: 413 DRVKKFVDCKSKDTSIRELFIVEGDSALGSVKMGRDSEFQAVMPVRGKILNCLKSDISKI 472

Query: 508 RNNQQIMDLVQALGCRTRSQYREED----------LRYEKVIIMTDADVDGAHIASLLLT 557
            ++  IMDL++ LGC      +             L++ K+II TDADVDG  I +L+LT
Sbjct: 473 VSSDIIMDLIKVLGCGIEIPIKTPKRGVLSFDINNLKWNKIIICTDADVDGFQIRTLILT 532

Query: 558 FFYQEMYDLIEQKHLFLISPPL----FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613
             Y+    LIE+ ++++   PL    ++     ++ +A DE+ K KI+   K     +  
Sbjct: 533 MIYRLCPTLIEEGYVYIAETPLYEMRYKTRANEETFFAFDEKEKNKIM---KGKDPSRFF 589

Query: 614 ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKF 673
           I R KGLGE  A  +  T MD   R L+RV         K   +     +G     R  +
Sbjct: 590 IQRSKGLGENTAEFMWLTTMDPKTRRLIRVT----SEDAKKMLEYFELYLGNNVAARKSY 645

Query: 674 IQERAS-FIDDVG 685
           I+E    + DD+ 
Sbjct: 646 IEENGHLYTDDLD 658


>gi|89891250|ref|ZP_01202757.1| topoisomerase IV. subunit B [Flavobacteria bacterium BBFL7]
 gi|89516562|gb|EAS19222.1| topoisomerase IV.  subunit  B [Flavobacteria bacterium BBFL7]
          Length = 620

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 197/662 (29%), Positives = 316/662 (47%), Gaps = 73/662 (11%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            Y   +IR L+  E +RMRPGMYIG      + +  ++ L  EVIDN++DE + G    I
Sbjct: 6   QYTEDNIRSLDWKEHIRMRPGMYIGKLGDGSSADDGIYILVKEVIDNSIDEFVMGSGKTI 65

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           EVS+ G   +TV D GRGIP+           +  +++ ++ GGK+D+  ++ S GL+GV
Sbjct: 66  EVSIQGE-RVTVRDYGRGIPLGK---------VVDVVSKMNTGGKYDSRAFKKSVGLNGV 115

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G   VNALS    V   R     S +FSRG  L+  E  E+   ++GT++TF PD +IF 
Sbjct: 116 GTKAVNALSSYFRVESTRDGKSASAEFSRGE-LNDQEMLEETSRRKGTKMTFVPDGEIFK 174

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    + +M ++  YL+  +   ++ +K             F+   GLK  L   +
Sbjct: 175 NF-KFRPEYVARMLKNYVYLNPGLTIMFNGEK-------------FFSENGLKDLLSENI 220

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337
            +   +   I     +        V    +  + + E  S+ N   T +GGTH +  R A
Sbjct: 221 VDTDRLYPIIHLKSED------IEVAITHSRTQYSEEYHSFVNGQNTTQGGTHLAAFREA 274

Query: 338 LTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA----- 392
           L R ++++          +  + D+  S V  +++ + EP F  QTKTKL S D      
Sbjct: 275 LVRTVREFYG-------KNYDASDIRKSIVSAIAIKVMEPVFESQTKTKLGSTDMGGDLP 327

Query: 393 --QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
             +  + + L+   D+YL ++   A  +   +I+   ER      R++ R  A +     
Sbjct: 328 TVRTFINDFLKTKLDNYLHKHSDVAEAIQRKIIQAERERKDLSGIRKLARDRAKKASLHN 387

Query: 451 GKLADCSQN-------IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
            KL DC  +           + LFI EGDSA GS  ++RN + QAV  LRGK LN  +  
Sbjct: 388 KKLRDCRVHLTDSKKENNLESTLFITEGDSASGSITKSRNVNTQAVFSLRGKPLNSYNMS 447

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            + +  N++   L  AL          EDLRY K++I TDADVDG HI  LL+TFF Q  
Sbjct: 448 KKIVYENEEFNLLQAALNIEDS----MEDLRYNKIVIATDADVDGMHIRLLLITFFLQFF 503

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
            +LI++ H++++  PLFR+    ++ Y +  E +   L E  K+     EI+RFKGLGE+
Sbjct: 504 PELIKKGHIYILQTPLFRVRNKKETRYCYTPEERAAALAELGKN----PEITRFKGLGEI 559

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
              + K          L  + ++ ++      ++ +   MG    +R +FI +      +
Sbjct: 560 SPDEFKHFIG--EDMRLDPLMLDDNM----SIEELLKFYMGKNTPDRQEFIIDNLKV--E 611

Query: 684 VG 685
           + 
Sbjct: 612 LD 613


>gi|260062971|ref|YP_003196051.1| DNA topoisomerase IV subunit B [Robiginitalea biformata HTCC2501]
 gi|88784539|gb|EAR15709.1| DNA topoisomerase IV subunit B [Robiginitalea biformata HTCC2501]
          Length = 619

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 201/664 (30%), Positives = 318/664 (47%), Gaps = 71/664 (10%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYA 94
           A   Y   +IR L+  E +RMRPGMYIG      + +  ++ L  EVIDN +DE + G  
Sbjct: 2   AQSQYTEENIRSLDWKEHIRMRPGMYIGKLGDGSSADDGIYILLKEVIDNCIDEFVMGAG 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             IE+++  +  +TV D GRGIP+           +E++ + ++ GGK+D   ++ + GL
Sbjct: 62  KTIEITIRED-KVTVRDYGRGIPLGK--------VVEVV-SKMNTGGKYDTRAFKKAVGL 111

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           +GVG   VNALS    V   R     + +F  G  L   E  E+   KRGT++TF PD  
Sbjct: 112 NGVGTKAVNALSTYFRVESNRDGKSKAAEFETGD-LKNEEFLEETSRKRGTKVTFTPDET 170

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     + +  + +M ++  YL+  +   ++ +K             F+   GLK  LQ
Sbjct: 171 IFKKY-KYRSEYVERMLRNYVYLNPGLTIVFNGEK-------------FHSENGLKDLLQ 216

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGL 334
                  L+   I   K E        V    +  + + E  S+ N   T +GGTH+S  
Sbjct: 217 DNNSADDLLYPIIHL-KGED-----IEVALTHSKTQYSEEYHSFVNGQHTTQGGTHQSAF 270

Query: 335 RVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA-- 392
           R AL + ++ +          +    D+  S +  +S+ + EP F  QTKTKL S D   
Sbjct: 271 REALVKTLRDFYG-------KNYDPSDVRKSVISAISIKVMEPVFESQTKTKLGSTDMGG 323

Query: 393 -----QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL 447
                +  + + +    D+YL +NP  A  +   + +   ER      R++ R+ A +  
Sbjct: 324 NLPTVRTYINDFVGRELDNYLHKNPQTAELIQRKIQQAERERKELSGIRKLARERAKKAS 383

Query: 448 RLPGKLADCSQNIAHG-------TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
               KL DC  ++ +        T LFI EGDSA GS  ++R+ + QAV  LRGK LN  
Sbjct: 384 LHNKKLRDCRVHLDNMKNDRRLETTLFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSY 443

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
               + +  N++   L  AL          EDLRY  ++I TDADVDG HI  LL+TFF 
Sbjct: 444 GMSKKIVYENEEFNLLQAALNIEESL----EDLRYNNIVIATDADVDGMHIRLLLITFFL 499

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           Q   ++I++ HL+++  PLFR+    +++Y + EE K++ +++     KGK EI+RFKGL
Sbjct: 500 QFFPEIIKEGHLYILQTPLFRVRNKKETIYCYSEEEKREAVKKL----KGKPEITRFKGL 555

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GE+   + +          L  V ++K +      ++ +   MG    +R +FI E    
Sbjct: 556 GEISPDEFQHFIG--EDIRLEPVMLDKAM----SIEELLKFYMGKNTPDRQEFIIENLKV 609

Query: 681 IDDV 684
             D+
Sbjct: 610 EVDL 613


>gi|139438115|ref|ZP_01771668.1| Hypothetical protein COLAER_00656 [Collinsella aerofaciens ATCC
           25986]
 gi|133776312|gb|EBA40132.1| Hypothetical protein COLAER_00656 [Collinsella aerofaciens ATCC
           25986]
          Length = 665

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 184/676 (27%), Positives = 311/676 (46%), Gaps = 44/676 (6%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
             + NY   SIR L+  E VR+RP +  G        H   E++ NA+DE   GY  LI 
Sbjct: 3   KNTANYGNDSIRQLKDEERVRLRPAVIFGSDGLDGCAHAAFEILSNAVDEARQGYGKLIT 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST---YEISGGLH 155
           ++   +G + V DNGRG P++ +P    +   E++   L+AGGK++N+    Y+ S G +
Sbjct: 63  LTAFRDGSIQVEDNGRGCPLDWNP-SEKRFNWELVFCELYAGGKYNNNQGGDYDFSLGTN 121

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL----EKKEKVRNKRGTRITFRP 211
           G+G       S+ + VTV R    +S  F +G  +       E +    N+ GT I +RP
Sbjct: 122 GLGSCATQYASEYMDVTVWRDGNKYSLHFKKGKVVGAKKKALEIEPSDENRTGTTIKWRP 181

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           D ++F            +  + +A ++  V      + +  E      +E+F +P G++ 
Sbjct: 182 DLEVFTS-ISIPHDWYRETMRRQAVVNANVTFRLRIEGDDGE----FSEEDFCYPKGIED 236

Query: 272 YLQTKLENRSLISSEIFTGKTEKKG-------THRGTVEWAIAWCEENPEITSYCNTILT 324
           Y+  K+   +   +E F  + +++G        +   +   + +         Y N+   
Sbjct: 237 YVLEKVG--TDYLTEPFFIEADRRGRDREDLPDYNVKITACMCFSRTFMMQEYYHNSSWL 294

Query: 325 DEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
           + GG+ E   R ALT  I  Y +     NK    I   D+    V + + F  +  +  Q
Sbjct: 295 ENGGSPEKAARSALTSAIDAYIKQQGKYNKNESGIKWQDVQDCLVLVTNCFSTQTSYENQ 354

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK  + +   Q+ +    ++    YL++N   A K++E V+     R    K R+  +  
Sbjct: 355 TKKAINNRFIQQAMTAFFKERLSTYLIENKDAANKIMEQVLINKRSRENAEKTRQSIKTN 414

Query: 443 AIRKLRLPGK---LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
             +K  +  +     DC     +  E++IVEGDSA G+ + +R+   Q V+P+RGKILN 
Sbjct: 415 LQQKTDMANRVQKFIDCRSKDKNRREIYIVEGDSAAGAIRTSRDAEFQGVMPVRGKILNC 474

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREED---------LRYEKVIIMTDADVDGAH 550
                 +I  +  IMDL++ LGC    + +            L + KVII TDADVDG H
Sbjct: 475 LKEDYPRIFKSDIIMDLMRVLGCGVEIKDKRIKNLGAFDLDNLNWNKVIICTDADVDGYH 534

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           I +L+LT  Y+ +  LI++ ++++   PL+ I    K+ +A+ E  K  IL+E    G  
Sbjct: 535 IRTLVLTMLYRLVPTLIDEGYVYIAESPLYEINCKEKTYFAYTELEKNGILKEI---GDQ 591

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADER 670
           K  I+R KGLGE     +  T M+   R L++V    +   +   +   N L+G     R
Sbjct: 592 KCSINRSKGLGENDPDMMWLTTMNPETRRLIKV----EPEDVTKMETMFNLLLGNDEAGR 647

Query: 671 FKFIQERAS-FIDDVG 685
            + I E    ++D + 
Sbjct: 648 KRHISEHGKEYLDQLD 663


>gi|86143382|ref|ZP_01061784.1| DNA topoisomerase IV subunit B [Leeuwenhoekiella blandensis MED217]
 gi|85830287|gb|EAQ48747.1| DNA topoisomerase IV subunit B [Leeuwenhoekiella blandensis MED217]
          Length = 618

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 203/661 (30%), Positives = 320/661 (48%), Gaps = 73/661 (11%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           Y   +IR L+  E +RMRPGMYIG      + +  ++ L  EV+DN++DE + G    IE
Sbjct: 7   YTEDNIRSLDWKEHIRMRPGMYIGKLGDGSSADDGIYILLKEVLDNSIDEFVMGAGKTIE 66

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           VS+ G   + V D GRGIP+           +  +++ ++ GGK+D+  ++ S GL+GVG
Sbjct: 67  VSIQGT-RVIVRDYGRGIPLGK---------VVDVVSKMNTGGKYDSRAFKKSVGLNGVG 116

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
              VNALS+   V   R N   S +F RG  L   E  ++   ++GT+ITF PD  IF +
Sbjct: 117 TKAVNALSEYFRVESTRDNKSASAEFERG-TLKDEEFLDETSRRKGTKITFVPDDTIFKN 175

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    + +M ++  YL+  +   ++ +K             FY   GLK  L  ++ 
Sbjct: 176 Y-KFRNEYVSRMLKNYVYLNPGLTIVFNGEK-------------FYSENGLKDLLGDRIA 221

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
              ++   I              V    +  + + E  S+ N   T +GGTH++  R A+
Sbjct: 222 ENDILYPIIHLRG------DDIEVALTHSRTQYSEEYHSFVNGQNTTQGGTHQAAFREAV 275

Query: 339 TRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA------ 392
            R I+++          +  + D+  S V  +S+ + EP F  QTKTKL S D       
Sbjct: 276 VRTIREFYN-------KNYDASDIRKSIVSAISIKVMEPVFESQTKTKLGSTDMGGELPT 328

Query: 393 -QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
            +  V + L+   D+YL +NP  A KL   +++   ER      R++ ++ A +      
Sbjct: 329 VRTYVNDFLKTKLDNYLHKNPETAEKLQRKILQAERERTELSGIRKLAKERAKKASLHNK 388

Query: 452 KLADCSQN-------IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
           KL DC  +           + LFI EGDSA GS  ++R+ + QAV  LRGK LN  +   
Sbjct: 389 KLRDCRVHLTDSKKERNLESTLFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSYNMSK 448

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           + +  N++   L  AL          EDLRY  ++I TDADVDG HI  LL+TFF Q   
Sbjct: 449 KIVYENEEFNLLQSALNIE----ESMEDLRYNNIVIATDADVDGMHIRLLLITFFLQFFP 504

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
           +LI++ HLF++  PLFR+    K++Y + E+ ++  +EE      GK EI+RFKGLGE+ 
Sbjct: 505 ELIKEGHLFILETPLFRVRNKKKTIYCYSEQERRDAIEELS----GKPEITRFKGLGEIS 560

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
             + K          L  + +++ +      ++ +   MG    +R KFI        ++
Sbjct: 561 PDEFKHFIG--ENIRLAPIMLDEAM----SIEEILQFYMGKNTPDRQKFIINNLKV--EL 612

Query: 685 G 685
            
Sbjct: 613 D 613


>gi|213026883|ref|ZP_03341330.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 490

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 198/501 (39%), Positives = 297/501 (59%), Gaps = 18/501 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVTDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R   I  Q +  G+P +PL       +K GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWPSHETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+        RR +    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469

Query: 516 LVQALGCRT-RSQYREEDLRY 535
           L+ ALGC   R +Y  + LRY
Sbjct: 470 LITALGCGIGRDEYNPDKLRY 490


>gi|305666738|ref|YP_003863025.1| DNA topoisomerase IV subunit B [Maribacter sp. HTCC2170]
 gi|88708962|gb|EAR01196.1| DNA topoisomerase IV subunit B [Maribacter sp. HTCC2170]
          Length = 619

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 193/664 (29%), Positives = 318/664 (47%), Gaps = 71/664 (10%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYA 94
           A   Y   +IR L+  E +R+RPGMYIG      + +  ++ L  E +DN +DE + G  
Sbjct: 2   AQSQYTEDNIRSLDWKEHIRLRPGMYIGKLGDGSSADDGIYILLKETLDNCIDEFVMGAG 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             IE+S+  +  + V D GRGIP+           +  +++ ++ GGK+D+  ++ S GL
Sbjct: 62  KTIEISI-KDNIVRVRDYGRGIPLGK---------VVDVVSKMNTGGKYDSRAFKKSVGL 111

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           +GVG   VNALS    V  +R+N I + +F +G+ +S  E   +   ++GTR++F PD  
Sbjct: 112 NGVGTKAVNALSSFFEVQSSRENKIKTAQFEQGVLVSE-EGPVETSKRKGTRVSFTPDET 170

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     +    + +M ++  YL+  +   ++ +K             F+   GLK  L+
Sbjct: 171 IFKKY-KYRNEYVERMLKNYVYLNPGLTIVFNGEK-------------FHSENGLKDLLE 216

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGL 334
                  L+   I   K E        V    +  + + E  S+ N   T +GGTH++  
Sbjct: 217 DNNNAEDLLYPIIHL-KGED-----IEVAITHSKTQYSEEYHSFVNGQHTTQGGTHQAAF 270

Query: 335 RVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA-- 392
           R AL R I+ +          +  + D+  S +  +++ + EP F  QTKTKL S D   
Sbjct: 271 REALVRTIRDFYG-------KNYDASDIRKSIISAIAIKVMEPVFESQTKTKLGSTDMGG 323

Query: 393 -----QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL 447
                +  + + +    D+YL +NP  + KL   ++   +ER      R++ R  A +  
Sbjct: 324 DFPTVRTYINDFVGRYLDNYLHKNPDTSEKLQRKIMMAEKERKELSGIRKLARDRAKKAS 383

Query: 448 RLPGKLADCSQNIAHGT-------ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
               KL DC  ++            LFI EGDSA GS  ++R+ + QAV  LRGK LN  
Sbjct: 384 LHNKKLRDCRVHLGDMKNDRRLESTLFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSY 443

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
               + +  N++   L  AL          EDLRY  ++I TDADVDG HI  LL+TFF 
Sbjct: 444 GMSKKIVYENEEFNLLQAALNIE----ESMEDLRYNNIVIATDADVDGMHIRLLLITFFL 499

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           Q   +LI++ HL+++  PLFR+    +++Y + ++ ++  L++      GK EI+RFKGL
Sbjct: 500 QFFPELIKENHLYILQTPLFRVRNKKETIYCYSDDERKGALDKL----TGKPEITRFKGL 555

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GE+   + +          L  V ++K +      ++ +   MG    +R +FI      
Sbjct: 556 GEISPDEFQHFIG--EDIRLEPVMLDKAM----SIENLLKFYMGKNTPDRQEFIINNLKV 609

Query: 681 IDDV 684
             D+
Sbjct: 610 EIDL 613


>gi|297464683|ref|XP_001254710.3| PREDICTED: DNA topoisomerase II, beta isozyme [Bos taurus]
          Length = 1908

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 141/696 (20%), Positives = 261/696 (37%), Gaps = 69/696 (9%)

Query: 16  SQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE---- 71
            Q ++ K ++S     + +    S    Y          LE + +RP  YIG  +     
Sbjct: 25  DQNNAAKKEESEIANKNDSSKKLSVERVYQKK-----TQLEHILLRPDTYIGSVEPLTQL 79

Query: 72  ------------------KALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN-GFLTVVD 111
                               L+ +F E++ NA D          I+VS+D     +++ +
Sbjct: 80  MWVYDEDVGMNCREVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWN 139

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171
           NG+GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V
Sbjct: 140 NGKGIPVVEH-KVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTV 198

Query: 172 TVARQNTIFSQK--FSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARL 227
             A +    S K  +   +  +   K +    +  T ITF+PD              A +
Sbjct: 199 ETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDRDIVALM 258

Query: 228 LKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEI 287
            +     A     VK  ++  K                  G ++Y+   ++++   +   
Sbjct: 259 TRRAYDLAGSCKGVKVMFNGKKLPV--------------NGFRSYVDLYVKDKLDETGVA 304

Query: 288 FTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
                E         +  +   E+  +  S+ N+I T +GG H   +   +   + +   
Sbjct: 305 LKVIHEL---ANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIE-VV 360

Query: 348 LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
             +NK  +S+    +       ++  I  P F  QTK  +         +  L + F   
Sbjct: 361 KKKNKAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKCQLSEKFFK- 419

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
              N      +L WV  +++   +  K+    + + I+ +       D     +    L 
Sbjct: 420 AASNCGIVESILNWVKFKAQ--TQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLI 477

Query: 468 IVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           + EGDSA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +G + 
Sbjct: 478 LTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQY 537

Query: 525 RSQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           +  Y + +    LRY K++IMTD D DG+HI  LL+ F +     L++   L     P+ 
Sbjct: 538 KKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIV 597

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           + ++  + +  +      +  +      +   +I  +KGLG   A + KE   D  +  +
Sbjct: 598 KASKNKQELSFYSIPEFDEWKKHI--ENQKAWKIKYYKGLGTSTAKEAKEYFADMERHRI 655

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           L                + +K    K D+R +++  
Sbjct: 656 LF--RYAGPEDDAAITLAFSK---KKIDDRKEWLTN 686


>gi|58258575|ref|XP_566700.1| DNA topoisomerase II [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134106673|ref|XP_778347.1| hypothetical protein CNBA3470 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50261050|gb|EAL23700.1| hypothetical protein CNBA3470 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57222837|gb|AAW40881.1| DNA topoisomerase II, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1272

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 162/721 (22%), Positives = 283/721 (39%), Gaps = 68/721 (9%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAF-ANQSASDNYDASSIRILEGLEPVR 59
           ++D   D   + P +   + +     G    + A  +N++AS+ Y     + L   E V 
Sbjct: 68  LSDAGSDTVCSPPKKKTKADDDDGDFGTESSAKAPTSNKNASEVY-----QKLSQREHVL 122

Query: 60  MRPGMYIGGTD-----------------------EKALHHLFSEVIDNAMDEVIAGY-AN 95
            RP  YIG  +                             +F E++ NA D  I     +
Sbjct: 123 KRPDTYIGSVEAITQPMWILNPETKTMVHRPITFVPGFLKIFDEILVNASDNKINDPTMD 182

Query: 96  LIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
            I+V +D     ++V +NGRGIPVE H K       E+I   L AG  FD+   +++GG 
Sbjct: 183 SIKVVIDREKNAISVYNNGRGIPVEMHTK-EGVMIPELIFGHLLAGSNFDDDQKKLTGGR 241

Query: 155 HGVGISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRP 211
           +G G  + N  S E  V  A    +  + Q FS  +      K    +  +  T+ITF+P
Sbjct: 242 NGYGAKLANIYSHEFIVETADKVNSKKYKQIFSNNMSKKGTPKITDNKKGEEWTKITFKP 301

Query: 212 DPKIFGDK--AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           D + FG         A L+K     A     VK   + ++    K    ++    +    
Sbjct: 302 DLERFGMNGIDDDTNALLMKRVYDMAGTVKDVKVFLNDERI---KVKNFKQYVEMYLNAS 358

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGT 329
            T         ++    I               E A A  +   +  S+ N+I T +GGT
Sbjct: 359 TTATSEAAGGAAVTKPPIIY------EVANKRWEVAFALSDGEFKQVSFTNSIATTKGGT 412

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           H   +   L   +    ++ +  +A  +    +       ++  I  P F  QTK  L  
Sbjct: 413 HVDMIATQLANKLMD--QIKKKNKAAPVKPFQIKNHMWIFVNALIENPAFDSQTKENLTL 470

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
             +    +  L + F   + +     T +++ V+  +  +  +  ++    K +     +
Sbjct: 471 KSSAFGSKCELSEEFIKKVAK-----TGIIDNVLNWARFKQDQILKKTDGTKRSRISGIV 525

Query: 450 PGKLADCS-QNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSE 505
             + A+ +    +    L + EGDSA   A        R    V PLRGK+LNV  AG +
Sbjct: 526 KLEDANNAGGRNSKNCTLILTEGDSAKALAVSGLAVVGRDEYGVFPLRGKLLNVREAGHD 585

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           +I  N +I  + Q LG +    Y   D LRY  ++IMTD D DG+HI  L++ F      
Sbjct: 586 QIVKNVEIQHIKQILGLKHNQDYATADSLRYGHLMIMTDQDHDGSHIKGLIINFLDHFYP 645

Query: 565 DLIEQK-HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
            L+     L     P+ ++ +G K +  +     ++   +   +     E   +KGLG  
Sbjct: 646 SLLRIPNFLVEFITPIVKVWKGKKEISFYTMPQYEEWKAQ--NNNGRGWESKYYKGLGTS 703

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE--RASFI 681
            ++  K+   D +K  L    +       +    + NK    KAD+R +++++    +++
Sbjct: 704 TSADAKKYFSDLDKHRLAFETMQ--PEDRQLIDMAFNK---KKADDRKEWLRQFKPGTYL 758

Query: 682 D 682
           D
Sbjct: 759 D 759


>gi|205371906|ref|ZP_03224726.1| DNA gyrase subunit B [Bacillus coahuilensis m4-4]
          Length = 480

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 177/490 (36%), Positives = 273/490 (55%), Gaps = 19/490 (3%)

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            +K GT I F PDP+IF +   ++   L    +  A+L+  +K      +         +
Sbjct: 5   TDKTGTIIHFIPDPEIFTETREYEFDILANRLRELAFLNRGIKITIEDKR------VEDK 58

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
           + E+ + GG+K+Y++     + +I  E    + EK G    +VE +I +       I SY
Sbjct: 59  RNEYLYEGGIKSYVEHINRTKEVIHDEPIYIEGEKDGI---SVEVSIQYNNGYTSNIFSY 115

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIRE 376
            N I T EGGTHESG + ALTR I  YA      +    ++  +D+      I+SV   +
Sbjct: 116 ANNINTYEGGTHESGFKTALTRVINDYARRNNIFKESDPNLSGEDVREGITAIVSVKHPD 175

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQ 435
           P+F GQTKTKL + +A+   +    + F+ ++++NP  A K++E  V+        ++ +
Sbjct: 176 PQFEGQTKTKLGNSEARTITDALFSEHFEKFMMENPTVARKIVEKGVMAARARMAAKKAR 235

Query: 436 REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
               RK+A+    LPGKLADCS      +E+++VEGDSAGGSAKQ R+R  QA+LPLRGK
Sbjct: 236 ELTRRKSALEVSSLPGKLADCSSRDPKISEIYVVEGDSAGGSAKQGRDRHFQAILPLRGK 295

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLL 555
           ILNV  A  +KI +N ++  ++ ALG      +     RY K++IMTDADVDG+HI +LL
Sbjct: 296 ILNVEKARLDKILSNNEVRSIITALGTGIGEDFDIAKARYHKIVIMTDADVDGSHIRTLL 355

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615
           LTFFY+ M  ++E  ++++  PPL+++ QG K  YA++E+  + +L       K    I 
Sbjct: 356 LTFFYRYMRQILEAGYVYIAQPPLYKVQQGKKVEYAYNEKQLEAVLSTLSPTPKPG--IQ 413

Query: 616 RFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675
           R+KGLGEM   QL ET MD   RTLL+V +   +    +  ++   LMG K + R  FI+
Sbjct: 414 RYKGLGEMNPDQLWETTMDPQTRTLLQVSLEDAI----EADETFEILMGDKVEPRRNFIE 469

Query: 676 ERASFIDDVG 685
           E A ++ ++ 
Sbjct: 470 ENAVYVKNLD 479


>gi|256820909|ref|YP_003142188.1| DNA topoisomerase IV subunit B [Capnocytophaga ochracea DSM 7271]
 gi|256582492|gb|ACU93627.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Capnocytophaga ochracea DSM 7271]
          Length = 616

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 190/660 (28%), Positives = 312/660 (47%), Gaps = 72/660 (10%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           YD  SIR L+  E +R RPGMYIG      + +  ++ L  EVIDN +DE + G    I+
Sbjct: 6   YDEDSIRSLDWQEHIRTRPGMYIGKLGDGSSADDGIYILLKEVIDNCIDEFVMGAGKTID 65

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V +  +  + V D GRGIP+           +  +++ ++ GGK+D+  ++ S GL+GVG
Sbjct: 66  VKI-TDNQVEVRDYGRGIPLGK---------VVDVVSKMNTGGKYDSRAFKKSIGLNGVG 115

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
              VNALS    V   R     S  F RG+        E+ + +RGT + F PD  IF +
Sbjct: 116 TKAVNALSTYFKVESVRDGQCKSAIFERGLLKEESAI-EESQKRRGTSVAFIPDDTIFKN 174

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    +++M ++  YL+  +   ++ +K             +Y   GLK  L     
Sbjct: 175 F-KFRNEYVVRMLKNYVYLNPGLTINYNGEK-------------YYSENGLKDLLTENNN 220

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
               +   I     +        +  + +  + + E  S+ N   T +GGTH +  + A 
Sbjct: 221 EEDFLYPIIHLRGED------IEIAISHSKTQYSEEYYSFVNGQNTTQGGTHLNAFKEAY 274

Query: 339 TRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA------ 392
            + I+ + +        +  + D+  S +  LS+ + EP F  QTKTKL S +       
Sbjct: 275 VKTIRDFYK-------KNYDASDVRKSIIAGLSIKVMEPVFESQTKTKLGSTEMGEGMPS 327

Query: 393 -QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
            +  + + +    D +L +NP  +  L   +++   ER      R++ ++ A +      
Sbjct: 328 VRTYINDFISRHLDDFLHKNPEISDALQRKIMQAQREREDLAGIRKLAKERAKKASLHNR 387

Query: 452 KLADCSQNIAH-------GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
           KL DC  ++          + LFI EGDSA GS  ++R+ + QAV  LRGK LN      
Sbjct: 388 KLRDCRVHLTDTKDERALQSTLFITEGDSASGSITKSRDVTTQAVFSLRGKPLNTYGMSK 447

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           + +  N++   L  AL          +DLRY  +++ TDADVDG HI  LL+TFF Q   
Sbjct: 448 KIVYENEEFNLLQAALNIEDS----MDDLRYNNIVVATDADVDGMHIRLLLITFFLQFFP 503

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
           ++I++ HL+++  PLFR+   T+ +Y + EE K+  +++     KGK EI+RFKGLGE+ 
Sbjct: 504 EIIKEGHLYILQTPLFRVRNKTQKIYCYSEEEKEAAIDKL----KGKPEITRFKGLGEIS 559

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS-FIDD 683
             + K+         L  V ++K ++    T+  +   MG    +R +FI       ID+
Sbjct: 560 PDEFKDFIG--EDIRLDPVMMDKTIH----TEQLLEFYMGKNTPDRQEFIINNLKVEIDN 613


>gi|315224100|ref|ZP_07865940.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Capnocytophaga
           ochracea F0287]
 gi|314945833|gb|EFS97842.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Capnocytophaga
           ochracea F0287]
          Length = 616

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 190/660 (28%), Positives = 312/660 (47%), Gaps = 72/660 (10%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           YD  SIR L+  E +R RPGMYIG      + +  ++ L  EVIDN +DE + G    I+
Sbjct: 6   YDEDSIRSLDWQEHIRTRPGMYIGKLGDGSSADDGIYILLKEVIDNCIDEFVMGAGKTID 65

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V +  +  + V D GRGIP+           +  +++ ++ GGK+D+  ++ S GL+GVG
Sbjct: 66  VKI-TDNQVEVRDYGRGIPLGK---------VVDVVSKMNTGGKYDSRAFKKSIGLNGVG 115

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
              VNALS    V   R     S  F RG+        E+ + +RGT + F PD  IF +
Sbjct: 116 TKAVNALSTYFKVESVRDGQCKSAIFERGLLKEEGAI-EESQKRRGTSVAFIPDDTIFKN 174

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    +++M ++  YL+  +   ++ +K             +Y   GLK  L     
Sbjct: 175 F-KFRNEYVVRMLKNYVYLNPGLTINYNGEK-------------YYSENGLKDLLTENNN 220

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
               +   I     +        +  + +  + + E  S+ N   T +GGTH +  + A 
Sbjct: 221 EEDFLYPIIHLRGED------IEIAISHSKTQYSEEYYSFVNGQNTTQGGTHLNAFKEAY 274

Query: 339 TRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA------ 392
            + I+ + +        +  + D+  S +  LS+ + EP F  QTKTKL S +       
Sbjct: 275 VKTIRDFYK-------KNYDASDVRKSIIAGLSIKVMEPVFESQTKTKLGSTEMGEGMPS 327

Query: 393 -QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
            +  + + +    D +L +NP  +  L   +++   ER      R++ ++ A +      
Sbjct: 328 VRTYINDFISRHLDDFLHKNPEISDALQRKIMQAQREREDLAGIRKLAKERAKKASLHNR 387

Query: 452 KLADCSQNIAH-------GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
           KL DC  ++          + LFI EGDSA GS  ++R+ + QAV  LRGK LN      
Sbjct: 388 KLRDCRVHLTDTKDERALQSTLFITEGDSASGSITKSRDVTTQAVFSLRGKPLNTYGMSK 447

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           + +  N++   L  AL          +DLRY  +++ TDADVDG HI  LL+TFF Q   
Sbjct: 448 KIVYENEEFNLLQAALNIEDS----MDDLRYNNIVVATDADVDGMHIRLLLITFFLQFFP 503

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
           ++I++ HL+++  PLFR+   T+ +Y + EE K+  +++     KGK EI+RFKGLGE+ 
Sbjct: 504 EIIKEGHLYILQTPLFRVRNKTQKIYCYSEEEKEAAIDKL----KGKPEITRFKGLGEIS 559

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS-FIDD 683
             + K+         L  V ++K ++    T+  +   MG    +R +FI       ID+
Sbjct: 560 PDEFKDFIG--EDIRLDPVMMDKTIH----TEQLLEFYMGKNTPDRQEFIINNLKVEIDN 613


>gi|68074485|ref|XP_679158.1| dna gyrase subunit b [Plasmodium berghei strain ANKA]
 gi|56499836|emb|CAI04926.1| dna gyrase subunit b, putative [Plasmodium berghei]
          Length = 849

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 237/839 (28%), Positives = 351/839 (41%), Gaps = 185/839 (22%)

Query: 18  GSSEKLKKSGEIPDSPAFANQSAS---DNYDASSIRILEGLEPVRMRPGMYIGGTDEKAL 74
            S + +    E  + P   N   S   +NYDA  I ILEGLE VR RPGMYIG TD K L
Sbjct: 13  KSLQPINNKKEKLNKPIKKNNKHSFRCNNYDAKDIVILEGLEAVRKRPGMYIGNTDSKGL 72

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           H +  E+IDNA+DE      N I+V +  +  +T+ DNGRGIP + H K   KS LE +L
Sbjct: 73  HQILFEIIDNAVDEYNNHECNQIKVIIHNDESITIEDNGRGIPCDIHEK-TKKSALETVL 131

Query: 135 TTLHAGGKFDNS-----------------------------------------------T 147
           T LH+G KF +                                                 
Sbjct: 132 TVLHSGAKFLDDDINMILEEEKGKQKKTKKEVQETGNSNISNNSKGTDTSVDGTNENLQK 191

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y+ S GLHGVG+SV NALS  + V V R N I++ +  +G  +  L  ++    KRGT+I
Sbjct: 192 YKYSSGLHGVGLSVSNALSIFMKVNVFRDNKIYNIELEKGKVVKELNVQDCPIKKRGTQI 251

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE-------------- 253
            ++PD  IF      ++  +       AYL+ ++   +  ++   +              
Sbjct: 252 HYKPDNTIFKTNIKHNSECIKNRLHQLAYLNDKLTFYFYDERNSNKGNSDKVSENVENNS 311

Query: 254 --KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA--IAWC 309
             K    E E     GGL  Y++   +N++ +        +         V+        
Sbjct: 312 YTKLDNYEYEIIKHEGGLDAYMEMLTKNKTNLFKTNNKVISINCFQKNIHVDLKLKWVTN 371

Query: 310 EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
           + N  I S+ N + T +GGTH   ++ A++R I  Y        K  ++I  + +     
Sbjct: 372 QYNENILSFVNNVNTIDGGTHVDAMKYAISRSIN-YNSKKNESIKNFVNIPGEYIREGLT 430

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            ILS+ +  PEF GQTKTKL S   +  +E+ + +         P     +    ++  +
Sbjct: 431 AILSIKMNNPEFEGQTKTKLGSYYLKPILESIIFEKLSEIFDFEPNLLNTIYLKALQAKK 490

Query: 428 ERLRRRKQRE--VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
                +  R+   ++        LPGKL DC  +     E+FIVEGDSA GSAKQARNR 
Sbjct: 491 SDEEAKAARDLIRSKNNQYYSTILPGKLVDCISDDISKNEIFIVEGDSAAGSAKQARNRE 550

Query: 486 NQAVLPLRGKILNVAS-AGSEKIRNNQQIMDLVQALGCRTRS------------------ 526
            QA+LPL+GKILNV     ++KI  N ++  L+ A+G                       
Sbjct: 551 IQAILPLKGKILNVEKIKNNKKIFENVELKSLITAIGLSVNYDNSKTGKSNTNKRNDNKD 610

Query: 527 ----QYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI 582
                + E  LRY K+IIMTDADVDG HI  LL+TF Y+   ++IE  ++++  PPL+++
Sbjct: 611 IKKNNFIENSLRYGKIIIMTDADVDGEHICILLITFLYRFQKEIIENGNVYVACPPLYKV 670

Query: 583 TQG---------------------TKSVYAHDEEHKQKIL-------------------- 601
           T                          ++ + +    ++L                    
Sbjct: 671 TYNKFDNNIKDSVISKFNVTTKASKYIIHTYSDSELNELLALLDMDKSQTLENKNTLKKR 730

Query: 602 -EEFKKHGKGKIEI------------------------------------------SRFK 618
            +E   +G+GK+ I                                           RFK
Sbjct: 731 KKENFFNGQGKLNITHGDENNTNFDPQNDQDNSEQNQTNPFINNDVLFSSSKKYEIQRFK 790

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           GLGEM+A QL  T MD   R L+RV ++  +         IN LMG  +  R  FI + 
Sbjct: 791 GLGEMMADQLWSTTMDPQVRKLIRVTVSDAIK----ANTLINSLMGEDSKSRKDFIIKN 845


>gi|295134568|ref|YP_003585244.1| DNA topoisomerase IV subunit B [Zunongwangia profunda SM-A87]
 gi|294982583|gb|ADF53048.1| DNA topoisomerase IV subunit B [Zunongwangia profunda SM-A87]
          Length = 620

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 199/665 (29%), Positives = 321/665 (48%), Gaps = 71/665 (10%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGY 93
           S    Y   +IR L+  E +RMRPGMYIG      + +  ++ L  EV+DN +DE + G 
Sbjct: 2   SQETKYTEDNIRSLDWKEHIRMRPGMYIGKLGDGSSADDGIYILLKEVLDNCIDEFVMGS 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
              IEVS+  N  + V D GRGIP+           +  +++ ++ GGK+D+  ++ S G
Sbjct: 62  GKTIEVSV-QNQRVIVRDYGRGIPLGK---------VVDVVSKMNTGGKYDSRAFKKSVG 111

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           L+GVG   VNALS    V   R     + +F +G  L   E  E+   +RGT++TF PD 
Sbjct: 112 LNGVGTKAVNALSSYFRVESNRDGKSHAAEFEQGN-LKDEESLEETSRRRGTKVTFVPD- 169

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           ++      F    + KM ++  YL+  +   ++ +K             FY   GLK  L
Sbjct: 170 ELIFKNFKFRNEYIEKMIKNYVYLNPGLSIIFNGEK-------------FYSENGLKDLL 216

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESG 333
              L     +   I              +    +  + + E  S+ N   T +GGTH + 
Sbjct: 217 NDTLNKEDRLYPIIHLRG------DDIEIAVTHSKAQYSEEYHSFVNGQNTSQGGTHLAA 270

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA- 392
            R A+ + ++++          +  + D+  S V  +S+ + EP F  QTKTKL S D  
Sbjct: 271 FREAIVKTVREFYG-------KNYDASDIRKSIVAAISIKVMEPVFESQTKTKLGSTDMG 323

Query: 393 ------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
                 +  + + ++  FD+YL +N   A KL   +++   ER      R++ ++ A + 
Sbjct: 324 GDFPTVRTYINDFVKRNFDNYLHKNQETAEKLQRKILQAERERKDLSGIRKLAKERAKKA 383

Query: 447 LRLPGKLADCSQN-------IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
                KL DC  +           T LFI EGDSA GS  ++R+ + QAV  L+GK LN 
Sbjct: 384 SLHNKKLRDCRIHLGDNKKERYLETTLFITEGDSASGSITKSRDVNTQAVFSLKGKPLNS 443

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
                + +  N++   L  AL          EDLRY  ++I TDADVDG HI  LL+TFF
Sbjct: 444 YGLSKKIVYENEEFNLLQAALNIEESL----EDLRYNNIVIATDADVDGMHIRLLLITFF 499

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
            Q   +LI++ HL+++  PLFR+    +++Y + E  +++ +++     KGK+EI+RFKG
Sbjct: 500 LQFFPELIKENHLYILQTPLFRVRNKKETIYCYSEYERKQAVQKL----KGKVEITRFKG 555

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679
           LGE+   + K   +  + R L  V ++KD    K  ++ ++  MG    +R +FI +   
Sbjct: 556 LGEISPDEFK-YFIGDDIR-LDPVMLDKD----KSIEEMLSFYMGKNTPDRQEFIIDNLK 609

Query: 680 FIDDV 684
              D+
Sbjct: 610 VELDL 614


>gi|150024741|ref|YP_001295567.1| DNA topoisomerase IV subunit B [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771282|emb|CAL42751.1| Topoisomerase IV subunit B [Flavobacterium psychrophilum JIP02/86]
          Length = 618

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 191/663 (28%), Positives = 313/663 (47%), Gaps = 73/663 (11%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           D Y+  +IR L+  E +R+RPGMYIG      + +  ++ L  EV+DN +DE + G    
Sbjct: 5   DQYNEDNIRSLDWKEHIRLRPGMYIGKLGDGSSPDDGIYILLKEVLDNCIDEFVMGAGKT 64

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV++  +  +TV D GRGIP+           +  +++ ++ GGK+D+  ++ S GL+G
Sbjct: 65  IEVTM-KDKMVTVRDYGRGIPLGK---------VIDVVSKMNTGGKYDSKAFKKSVGLNG 114

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG   VNALS    V   R N   + +FS G  L+  E   +   ++GT+++F  D  IF
Sbjct: 115 VGTKAVNALSHYFRVESVRDNQQKAAEFSAGN-LTLEEDIIESTKRKGTKVSFIADEAIF 173

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   +    ++KM ++  YL+  +   ++ +K             F+   GLK  L+  
Sbjct: 174 KNY-KYRNEYIIKMLKNYCYLNTGLTIIYNGEK-------------FFSNNGLKDLLEEN 219

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRV 336
           +    ++   I              +    +  + + E  S+ N   T +GGTH    R 
Sbjct: 220 IAEEDMVYPIIHLLG------DDIEIAITHSKTQYSEEYYSFVNGQNTTQGGTHLGAFRE 273

Query: 337 ALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA---- 392
           ++ + IK++             + D+  S V  + V + EP F  QTKTKL S D     
Sbjct: 274 SIVKTIKEFYN-------KPFEASDIRKSIVSAIVVRVEEPVFESQTKTKLGSTDMGPDL 326

Query: 393 ---QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
              +  V + ++   D++L +NP  A  LL  +++   ER      R++ +  A +    
Sbjct: 327 PSVRTFVNDFIKTKLDNFLHKNPETADLLLRKILQAERERKELSGIRKLAKDRAKKSNLH 386

Query: 450 PGKLADCSQNIAH-------GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
             KL DC  ++          + LFI EGDSA GS  ++R+ + QAV  LRGK LN    
Sbjct: 387 NKKLRDCRVHLTDAKNARSLESTLFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSYGM 446

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
             + +  N++   L  AL          EDLRY  ++I TDADVDG HI  LL+TFF Q 
Sbjct: 447 SKKIVYENEEFNLLQAALNIE----ESMEDLRYNNIVIATDADVDGMHIRLLLITFFLQF 502

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
             ++I++ HL+++  PLFR+    +++Y + E+ K+  +E+     K K EI+RFKGLGE
Sbjct: 503 FPEMIKEGHLYILQTPLFRVRNKKETIYCYSEQEKRDAIEKL----KPKPEITRFKGLGE 558

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           +   + K          L  V ++K        +  +   MG    +R  FI        
Sbjct: 559 ISPDEFKNFIG--ETIRLDPVMLDKST----SIEKLLEFYMGKNTPDRQTFIINNLKV-- 610

Query: 683 DVG 685
           ++ 
Sbjct: 611 ELD 613


>gi|120435833|ref|YP_861519.1| DNA topoisomerase IV subunit B [Gramella forsetii KT0803]
 gi|117577983|emb|CAL66452.1| topoisomerase IV subunit B [Gramella forsetii KT0803]
          Length = 620

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 199/664 (29%), Positives = 320/664 (48%), Gaps = 75/664 (11%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           Y   +IR L+  E +RMRPGMYIG      + +  ++ L  EVIDN++DE + G    IE
Sbjct: 7   YTEDNIRSLDWKEHIRMRPGMYIGKLGDGSSQDDGIYILLKEVIDNSIDEFVMGAGKTIE 66

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           +S+  N  + V D GRGIP+           +  +++ ++ GGK+D   ++ S GL+GVG
Sbjct: 67  ISV-QNQRVIVRDFGRGIPLGK---------VVDVVSKMNTGGKYDTRAFKKSVGLNGVG 116

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
              VNALS    V  +R     + +F +G  L   E  ++   +RGT+ITF PD ++   
Sbjct: 117 TKAVNALSSYFRVESSRDTKSHAAEFEQGN-LMEEEHLDETSRRRGTKITFIPD-EVIFK 174

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
           K  F    + KM ++  YL+  +   ++ +K             FY   GLK  L   + 
Sbjct: 175 KYKFRNEYIEKMLKNYVYLNPGLTIVFNGEK-------------FYSENGLKDLLGDSIH 221

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
              ++   +   K E        V    +  + + E  S+ N   T +GGTH +  R ++
Sbjct: 222 EDDMLYPILHL-KGED-----IEVAITHSRSQYSEEYHSFVNGQNTSQGGTHLAAFRESV 275

Query: 339 TRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA------ 392
            + I++Y          +  + D+  S V  +S+ + EP F  QTKTKL S D       
Sbjct: 276 VKTIREYYG-------KNYEASDIRKSIVAAISIKVMEPVFESQTKTKLGSTDMGGKLPT 328

Query: 393 -QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
            +  + + ++   D+YL +N   A  L   +++   ER      R++ +  A +      
Sbjct: 329 VRTHINDFVKRNLDNYLHKNSETAESLQRKILQAERERKDLSGIRKLAKDRAKKASLHNK 388

Query: 452 KLADCSQNIAH-------GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
           KL DC  ++          T LFI EGDSA GS  ++R+   QAV  L+GK LN      
Sbjct: 389 KLRDCRVHLGDSKHERCLETTLFITEGDSASGSITKSRDVVTQAVFSLKGKPLNSYGLSK 448

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           + +  N++   L  AL          EDLRY  ++I TDADVDG HI  LL+TFF Q   
Sbjct: 449 KIVYENEEFNLLQAALNIEESL----EDLRYHNIVIATDADVDGMHIRLLLITFFLQFFP 504

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
           +LI++ HL+++  PLFR+    +++Y + E  +++ +E+      GK EI+RFKGLGE+ 
Sbjct: 505 ELIKENHLYILQTPLFRVRNKKETIYCYSEMERRQAMEKLS----GKPEITRFKGLGEIS 560

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF---- 680
             +      D     L  V ++KD    K  ++ ++  MG    +R +FI +   F    
Sbjct: 561 PDEFVHFIGD--NIRLDPVMLDKD----KSIEEMLSFYMGKNTPDRQEFIIDNLKFELDL 614

Query: 681 IDDV 684
           ++D+
Sbjct: 615 VEDL 618


>gi|163756901|ref|ZP_02164009.1| DNA topoisomerase IV subunit B [Kordia algicida OT-1]
 gi|161323137|gb|EDP94478.1| DNA topoisomerase IV subunit B [Kordia algicida OT-1]
          Length = 618

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 198/665 (29%), Positives = 314/665 (47%), Gaps = 71/665 (10%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGY 93
           S +  Y   +IR L+  E +R RPGMYIG      + +  ++ L  EV+DN++DE + G 
Sbjct: 2   SQNSQYSEENIRTLDWREHIRTRPGMYIGKLGDGSSADDGIYILVKEVLDNSIDEFVMGV 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
              IEVS+ G   + V D GRGIP+           +  +++ ++ G K+D+  ++ S G
Sbjct: 62  GKTIEVSIQGTKVI-VRDYGRGIPLGK---------VVDVVSKMNTGAKYDSKAFKKSVG 111

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           L+GVG   VNALS    V   R     + +F+ G+ L   E  E+   +RGT++TF PD 
Sbjct: 112 LNGVGTKAVNALSTYFRVESTRDGKSSAAEFATGV-LKDKEFLEETSRRRGTKVTFVPDE 170

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF +   F    + KM ++  YL+  +   ++ +K             F+   GLK  L
Sbjct: 171 TIFKNF-KFRMEYVAKMLRNYVYLNPGLTIIFNGEK-------------FFSENGLKDLL 216

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESG 333
           +       ++   I              V    +  + + E  S+ N   T +GGTH+S 
Sbjct: 217 EDNNNQEDMLYPIIHLKG------DDIEVAMTHSKTQYSEEYHSFVNGQHTTQGGTHQSA 270

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA- 392
            R A+ + I+ +          +  + D+  S +  +S+ + EP F  QTKTKL S D  
Sbjct: 271 FREAIVKTIRDFYG-------KNYEASDIRKSIISAISIKVMEPVFESQTKTKLGSTDMG 323

Query: 393 ------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
                 +  V + +    D+YL +NP  A KL   +++   ER      R++ ++ A + 
Sbjct: 324 GDLPTVRTYVNDFIGKYLDNYLHKNPETAEKLQRKILQAERERKELSGIRKLAKERAKKA 383

Query: 447 LRLPGKLADCSQN-------IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
                KL DC  +           + LFI EGDSA GS  ++R+ + QAV  LRGK LN 
Sbjct: 384 SLHNKKLRDCRIHLGDVKKDRRLESTLFITEGDSASGSITKSRDVNTQAVFSLRGKPLNS 443

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
            +   + +  N++   L  AL          EDLRY  ++I TDADVDG HI  LL+TFF
Sbjct: 444 YAMSKKIVYENEEFNLLQAALNIE----ESMEDLRYNNIVIATDADVDGMHIRLLLITFF 499

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
            Q   +LI++ HL+++  PLFR+    +++Y + E  K   +E+      GK EI+RFKG
Sbjct: 500 LQFFPELIKEGHLYILQTPLFRVRNKKETIYCYSEAEKLTAIEKLS----GKPEITRFKG 555

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679
           LGE+   + K    D     L  V ++++       ++ +   MG     R +FI     
Sbjct: 556 LGEISPDEFKHFIGD--DIRLDPVMLDRET----SIEELLQFYMGKNTPNRQEFIINNLK 609

Query: 680 FIDDV 684
              D+
Sbjct: 610 VELDL 614


>gi|34305633|gb|AAQ63623.1| Tmp4 [Bifidobacterium breve UCC2003]
          Length = 592

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 214/578 (37%), Positives = 310/578 (53%), Gaps = 21/578 (3%)

Query: 8   LFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIG 67
           L      + Q  +   + +             A ++Y+AS +R+LEGLE VR+RPGMYIG
Sbjct: 17  LAEETSKEEQLKAAAERINNAELTEGELDESMAPEHYEASDLRVLEGLEAVRIRPGMYIG 76

Query: 68  GTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNK 127
            T  + LHHL  E++DN++DE +AGYA+ IEV++  +  + VVD+GRGIPV+  P     
Sbjct: 77  STGPRGLHHLVYEIVDNSVDEALAGYASHIEVTILPDNGIRVVDDGRGIPVDEVP-GEGV 135

Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187
           S +E ++T LHAGGKF    Y +SGGLHGVGISVVNALS  + + V RQ   ++Q +   
Sbjct: 136 SGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTHVDIEVRRQGFHWTQTYVDQ 195

Query: 188 IPLSPLEKKEKV--RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
            P++PL++ E +      GT +TF  DPKIF     +D   L    Q  A+L+  +K   
Sbjct: 196 HPVAPLKQGEPMAEDESTGTSVTFWADPKIFETTI-YDFETLRSRFQQMAFLNKGLKLSL 254

Query: 246 SCDKEIA------------EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
           + ++               E     +   + +  G+K Y+   ++ R     E      E
Sbjct: 255 TDERVTDQAGDEVAGDAEGEPGEKHQTVTYQYLNGIKDYVDYLVKVRKATPVEEDVISFE 314

Query: 294 -KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT-- 349
            +      + E A+ W       + ++ NTI T EGGTHE G R ALT  + +YA     
Sbjct: 315 AEDLKLGISAELAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLVNRYARDKAI 374

Query: 350 QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
              +  ++  DD+      ++SV +  P+F GQTKTKL + +A+  V+  + D    +  
Sbjct: 375 LKDKDENLSGDDVREGLTAVISVKLTNPQFEGQTKTKLGNSEAKTFVQRVMTDKLGDWFD 434

Query: 410 QNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFI 468
            +P EA  +++  IE S  RL  +K RE  R+ +I     +P KL DC  +     ELFI
Sbjct: 435 AHPAEAKNIIQKAIEASRARLAAKKARENTRRKSIFESAGMPDKLKDCQSSNPEECELFI 494

Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528
           VEGDSAGGSA Q RN   QA+LPLRGKILN   A  +++  +  I  L+ A+G      +
Sbjct: 495 VEGDSAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSDTIESLITAVGGGYGEDF 554

Query: 529 REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
               +RY KVIIM DADVDGAHIA+L LT F++ M  +
Sbjct: 555 DISKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPM 592


>gi|315022878|gb|EFT35902.1| DNA topoisomerase IV subunit B [Riemerella anatipestifer RA-YM]
          Length = 619

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 197/654 (30%), Positives = 310/654 (47%), Gaps = 72/654 (11%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           NY   +IR L+  E +R+RPGMYIG      + +  ++ L  E++DN++DE        I
Sbjct: 9   NYSEDNIRTLDWQEHIRLRPGMYIGKLGDGSSADDGIYILLKEILDNSIDEFRMKAGKRI 68

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           E+ LD +  + + D GRGIP+           +   ++ ++ GGK+D+  ++ S GL+GV
Sbjct: 69  EIKLD-DRKVQIRDYGRGIPLGK---------VVDAVSKMNTGGKYDSKAFKKSVGLNGV 118

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G   VNALS+   V   R N     +F RG       + E   ++ GT ITF PD +IF 
Sbjct: 119 GTKAVNALSEYFRVKSVRDNKTKVAEFCRGNITENFPE-EDSSDRNGTEITFIPDAEIFL 177

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    + +M ++ AYL+  +K  ++ +              ++   GLK  L+ ++
Sbjct: 178 NY-KFRKEYIERMLRNYAYLNPGLKIIFNGE-------------TYFSENGLKDLLEEEM 223

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337
           E+++L       G           V    +   +     S+ N   T +GGTH +  R A
Sbjct: 224 ESQTLYPIVHLKGD-------DIEVAITHSDKSQTETYFSFVNGQNTTQGGTHLNAFREA 276

Query: 338 LTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA----- 392
             + I+++          +  + D+  S +  +S+ + EP F  QTKTKL S D      
Sbjct: 277 YVKTIREFFN-------KNFDASDIRKSIIAAISINVEEPVFESQTKTKLGSNDIGPQGP 329

Query: 393 --QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
             +  V + L+   D++L +NP  A  + + ++    ER      +++ R+ A +     
Sbjct: 330 TVRTFVIDFLKTKLDNFLHKNPEVAEAIYKKILVSERERKELSGIQKLARERAKKVSLHN 389

Query: 451 GKLADCSQNIAHG-------TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
            KL DC Q+           T++FI EGDSA GS  ++R+   QAV  L+GK LN     
Sbjct: 390 KKLRDCRQHYNEQKADRKSETQIFITEGDSASGSITKSRDVETQAVFSLKGKPLNCYGLT 449

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            + +  N++   L  AL          EDLRY +VII TDADVDG HI  L++TFF Q  
Sbjct: 450 KKVVYENEEFNLLQAALNIEESL----EDLRYNQVIIATDADVDGMHIRLLMITFFLQFF 505

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
            DLI+  HL+++  PLFR+    ++ Y + EE + K L E  K+     EI+RFKGLGE+
Sbjct: 506 PDLIKNGHLYILQTPLFRVRNKKETRYCYTEEERIKALNELGKN----PEITRFKGLGEI 561

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
              + K          L  V I KD    +     +   MG    +R +FI E 
Sbjct: 562 SPDEFKHFIG--KDIRLEPVVIGKD----QTIDQILEFYMGKNTPDRQQFILEN 609


>gi|325336833|gb|ADZ13107.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Riemerella anatipestifer RA-GD]
          Length = 633

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 197/654 (30%), Positives = 310/654 (47%), Gaps = 72/654 (11%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           NY   +IR L+  E +R+RPGMYIG      + +  ++ L  E++DN++DE        I
Sbjct: 23  NYSEDNIRTLDWQEHIRLRPGMYIGKLGDGSSADDGIYILLKEILDNSIDEFRMKAGKRI 82

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           E+ LD +  + + D GRGIP+           +   ++ ++ GGK+D+  ++ S GL+GV
Sbjct: 83  EIKLD-DRKVQIRDYGRGIPLGK---------VVDAVSKMNTGGKYDSKAFKKSVGLNGV 132

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G   VNALS+   V   R N     +F RG       + E   ++ GT ITF PD +IF 
Sbjct: 133 GTKAVNALSEYFRVKSVRDNKTKVAEFCRGNITENFPE-EDSSDRNGTEITFIPDAEIFL 191

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    + +M ++ AYL+  +K  ++ +              ++   GLK  L+ ++
Sbjct: 192 NY-KFRKEYIERMLRNYAYLNPGLKIIFNGE-------------TYFSENGLKDLLEEEM 237

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337
           E+++L       G           V    +   +     S+ N   T +GGTH +  R A
Sbjct: 238 ESQTLYPIVHLKGD-------DIEVAITHSDKSQTETYFSFVNGQNTTQGGTHLNAFREA 290

Query: 338 LTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA----- 392
             + I+++          +  + D+  S +  +S+ + EP F  QTKTKL S D      
Sbjct: 291 YVKTIREFFN-------KNFDASDIRKSIIAAISINVEEPVFESQTKTKLGSNDIGPQGP 343

Query: 393 --QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
             +  V + L+   D++L +NP  A  + + ++    ER      +++ R+ A +     
Sbjct: 344 TVRTFVIDFLKTKLDNFLHKNPEVAEAIYKKILVSERERKELSGIQKLARERAKKVSLHN 403

Query: 451 GKLADCSQNIAHG-------TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
            KL DC Q+           T++FI EGDSA GS  ++R+   QAV  L+GK LN     
Sbjct: 404 KKLRDCRQHYNEQKADRKSETQIFITEGDSASGSITKSRDVETQAVFSLKGKPLNCYGLT 463

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            + +  N++   L  AL          EDLRY +VII TDADVDG HI  L++TFF Q  
Sbjct: 464 KKVVYENEEFNLLQAALNIEESL----EDLRYNQVIIATDADVDGMHIRLLMITFFLQFF 519

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
            DLI+  HL+++  PLFR+    ++ Y + EE + K L E  K+     EI+RFKGLGE+
Sbjct: 520 PDLIKNGHLYILQTPLFRVRNKKETRYCYTEEERIKALNELGKN----PEITRFKGLGEI 575

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
              + K          L  V I KD    +     +   MG    +R +FI E 
Sbjct: 576 SPDEFKHFIG--KDIRLEPVVIGKD----QTIDQILEFYMGKNTPDRQQFILEN 623


>gi|313205726|ref|YP_004044903.1| DNA topoisomerase type iia subunit b region 2 domain protein
           [Riemerella anatipestifer DSM 15868]
 gi|312445042|gb|ADQ81397.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Riemerella anatipestifer DSM 15868]
          Length = 619

 Score =  413 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 196/654 (29%), Positives = 310/654 (47%), Gaps = 72/654 (11%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           NY   +IR L+  E +R+RPGMYIG      + +  ++ L  E++DN++DE        I
Sbjct: 9   NYSEDNIRTLDWQEHIRLRPGMYIGKLGDGSSADDGIYILLKEILDNSIDEFRMKAGKRI 68

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           E+ LD +  + + D GRGIP+           +   ++ ++ GGK+D+  ++ S GL+GV
Sbjct: 69  EIKLD-DRKVQIRDYGRGIPLGK---------VVDAVSKMNTGGKYDSKAFKKSVGLNGV 118

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G   VNALS+   V   R N     +F RG       + E   ++ GT ITF PD +IF 
Sbjct: 119 GTKAVNALSEYFRVKSVRDNKTKVAEFCRGNITENFPE-EDSSDRNGTEITFIPDAEIFL 177

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    + +M ++ AYL+  +K  ++ +              ++   GLK  L+ ++
Sbjct: 178 NY-KFRKEYIERMLRNYAYLNPGLKIIFNGE-------------TYFSENGLKDLLEEEM 223

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337
           E+++L       G           V    +   +     S+ N   T +GGTH +  R A
Sbjct: 224 ESQTLYPIVHLKGD-------DIEVAITHSDKSQTETYFSFVNGQNTTQGGTHLNAFREA 276

Query: 338 LTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA----- 392
             + I+++          +  + D+  S +  +S+ + EP F  QTKTKL S D      
Sbjct: 277 YVKTIREFFN-------KNFDASDIRKSIIAAISINVEEPVFESQTKTKLGSNDIGPQGP 329

Query: 393 --QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
             +  V + L+   D++L +NP  A  + + ++    ER      +++ R+ A +     
Sbjct: 330 TVRTFVIDFLKTKLDNFLHKNPEVAEAVHKKILVSERERKELSGIQKLARERAKKVSLHN 389

Query: 451 GKLADCSQNIAHG-------TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
            KL DC Q+           T++FI EGDSA GS  ++R+   QAV  L+GK LN     
Sbjct: 390 KKLRDCRQHYNEQKADRKSETQIFITEGDSASGSITKSRDVETQAVFSLKGKPLNCYGLT 449

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            + +  N++   L  AL          EDLRY +VII TDADVDG HI  L++TFF Q  
Sbjct: 450 KKVVYENEEFNLLQAALNIEESL----EDLRYNQVIIATDADVDGMHIRLLMITFFLQFF 505

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
            DLI+  HL+++  PLFR+    ++ Y + EE + + L E  K+     EI+RFKGLGE+
Sbjct: 506 PDLIKNGHLYILQTPLFRVRNKKETRYCYTEEERIRALNELGKN----PEITRFKGLGEI 561

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
              + K          L  V I KD    +     +   MG    +R +FI E 
Sbjct: 562 SPDEFKHFIG--KDIRLEPVVIGKD----QTIDQILEFYMGKNTPDRQQFILEN 609


>gi|319955666|ref|YP_004166933.1| DNA topoisomerase type iia subunit b region 2 domain protein
           [Cellulophaga algicola DSM 14237]
 gi|319424326|gb|ADV51435.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Cellulophaga algicola DSM 14237]
          Length = 618

 Score =  413 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 193/661 (29%), Positives = 316/661 (47%), Gaps = 71/661 (10%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +Y   +IR L+  E +RMRPGMYIG      + +  ++ L  EV+DN +DE + G    I
Sbjct: 6   DYTEDNIRSLDWKEHIRMRPGMYIGKLGDGSSADDGIYILLKEVVDNCIDEFVMGSGRTI 65

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           ++S+  +  ++V D GRGIP+           +  +++ ++ GGK+D+  ++ S GL+GV
Sbjct: 66  DISI-KDNLVSVRDYGRGIPLGK---------VVDVVSKMNTGGKYDSRAFKKSVGLNGV 115

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G   VNALS    V  +R N + + +F +G  +   E   +   ++GT+++F PD ++  
Sbjct: 116 GTKAVNALSTFFKVESSRDNQLKTAEFHQGNLVQE-EGPGETSKRKGTKVSFIPD-EVIF 173

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
            K  +    + +M ++  YL+  +   ++ +K             F+   GLK  L+   
Sbjct: 174 KKYKYRNEYIERMLKNYVYLNPGLTIVFNGEK-------------FFSENGLKDLLEDNN 220

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337
               ++   I              V    +  + + E  S+ N   T +GGTH+S  R A
Sbjct: 221 NMEDMLYPIIHLKG------DDIEVAITHSKTQYSEEYHSFVNGQHTTQGGTHQSAFREA 274

Query: 338 LTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA----- 392
           + + I+ +          S  + D+  S +  +++ + EP F  QTKTKL S D      
Sbjct: 275 IAKTIRDFYG-------KSYDASDIRKSIISAIAIKVMEPVFESQTKTKLGSTDMGGEFP 327

Query: 393 --QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
             +  + + +    D+YL +NP  A KL   +++  +ER      R++ R  A +     
Sbjct: 328 TVRTYINDFIGTKLDNYLHKNPDTAEKLQRKIMQAEKERKDLSGIRKLARDRAKKSNLHN 387

Query: 451 GKLADC-------SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
            KL DC         N    + LFI EGDSA GS  ++R+ + QAV  LRGK LN     
Sbjct: 388 KKLRDCRVHLADIKNNRYLESTLFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSYGMS 447

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            + +  N++   L  AL          EDLRY K++I TDADVDG HI  LL+TFF Q  
Sbjct: 448 KKIVYENEEFNLLQAALNIEDS----MEDLRYNKIVIATDADVDGMHIRLLLITFFLQFF 503

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
            +LI++ HL+++  PLFR+    ++ Y +  E K+  +E       GK EI+RFKGLGE+
Sbjct: 504 PELIKENHLYILQTPLFRVRNKKQTFYCYSPEEKKAAMEALS----GKPEITRFKGLGEI 559

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
              + +          L  V ++K++      +  +   MG    +R KFI E      D
Sbjct: 560 SPDEFQHFIG--EDIRLEPVMLDKNM----SIESLLEFYMGKNTPDRQKFIIENLKVELD 613

Query: 684 V 684
           +
Sbjct: 614 L 614


>gi|308810347|ref|XP_003082482.1| putative DNA topoisomerase II (ISS) [Ostreococcus tauri]
 gi|116060951|emb|CAL56339.1| putative DNA topoisomerase II (ISS) [Ostreococcus tauri]
          Length = 1099

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 153/721 (21%), Positives = 282/721 (39%), Gaps = 82/721 (11%)

Query: 2   TDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMR 61
           +DD  D     P  + G  EK   +   P + A   ++  + Y          LE + +R
Sbjct: 16  SDDDFD--ENAPVVTHGKGEKTATAKTKPLANATNKKTVEEIYQKK-----TQLEHILLR 68

Query: 62  PGMYIGGTD-----------------------EKALHHLFSEVIDNAMDEVIAGY-ANLI 97
           P  Y+G  +                          L+ +F E++ NA D  +       +
Sbjct: 69  PDTYVGSCERAEEKAWVYDDATKSLVHRQVSFVPGLYKIFDEILVNATDNKVRDPKMKEL 128

Query: 98  EVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
            V +D   G + V ++G GIPVE H K       E+I   L     +D++  ++ GG +G
Sbjct: 129 RVDIDVEQGIIRVYNDGNGIPVEMH-KEEGVYVPELIFGHLLTSSNYDDNEKKVVGGRNG 187

Query: 157 VGISVVNALSDELHVTVARQ--NTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDP 213
            G  + N  S E  +          + Q F+  + +       K +  +  T +TF+PD 
Sbjct: 188 YGAKLANIFSTEFIIETCDGSREKRYRQVFNNNMSVKGEPVVTKCKKSENWTCVTFKPDF 247

Query: 214 KIFGDK---AGFDAARLLKMTQSKAYLSGRVK-TCWSCDKEIAEKYGIPEKEEFYFPGGL 269
             FG +       AA + K     A   G+      + +K   +              G 
Sbjct: 248 AKFGMESLVNEDVAALMCKRVYDAAGNIGKNTSIYLNGEKLAIK--------------GF 293

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGT 329
             Y+   L +++               T R  V  +I+  ++  +  S+ N I T +GGT
Sbjct: 294 NDYVSMYLNSQATAPKIFDLS------TDRWQVCVSISDSQQFQQC-SFVNGICTMKGGT 346

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           H + +   +++ + +     + K   ++ +  +       ++  I  P F  QTK  L++
Sbjct: 347 HVNNVADQISQKLLE-KIQKKEKTCKNLKAFQVKNHLWVFVNALIENPAFDSQTKETLIT 405

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLR 448
              +     +  D     L+      + ++E ++  ++ +  +  ++    +++ +  + 
Sbjct: 406 RPNKFGSSYSPSDSIIKKLM-----DSGVVENIMSWAQFKQSKELKKTDGAKRSRLTGIP 460

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSE 505
                 D     +    L + EGDSA   A    +   R    V PLRGK+LNV  A  +
Sbjct: 461 KLDDANDAGGRNSESCTLILTEGDSAKALAVSGLSVVGRDKYGVFPLRGKLLNVRDASHD 520

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           +I+NN +I ++ Q LG +   +Y     LRY K++IMTD D DG+HI  LL+ F +    
Sbjct: 521 QIKNNAEINNIKQILGLQHGKEYDSAKSLRYGKLMIMTDQDHDGSHIKGLLINFLHAHFP 580

Query: 565 DLIEQ-KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
            L++    L     P+ + T+G +S   +     +   E     G     I  +KGLG  
Sbjct: 581 SLLKIPGFLLEFITPIIKATKGKQSKVFYTLPEYETWKE--ANQGSAGWSIKYYKGLGTS 638

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI--QERASFI 681
            A++ KE     +     +  I +          S +K    + ++R  ++   E  +F+
Sbjct: 639 TANEAKEYFASLDHHR--KNFIWESDGDGDLIDMSFSK---KRVEDRKAWLNAYEPGTFL 693

Query: 682 D 682
           D
Sbjct: 694 D 694


>gi|307110827|gb|EFN59062.1| hypothetical protein CHLNCDRAFT_137783 [Chlorella variabilis]
          Length = 1566

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 153/701 (21%), Positives = 271/701 (38%), Gaps = 75/701 (10%)

Query: 17  QGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD------ 70
             +  K+K +           ++  + Y     + +  +E V +RP  YIG T+      
Sbjct: 7   SENGGKVKAAKAPLAVANKGGKTIEETY-----QKVTQVEHVLLRPDTYIGSTERQQQQL 61

Query: 71  ---------------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNG 113
                             L+ +F E++ NA D  +     + + V +D + G + V++NG
Sbjct: 62  WVHDGERMVHKSIDFVPGLYKIFDEILVNAADNKVRDASMDTLRVDVDADKGSIKVMNNG 121

Query: 114 RGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTV 173
            GIPVE H K       E+I   L     ++++  +++GG +G G  + N  S +  V  
Sbjct: 122 AGIPVEVH-KTEGIYVPELIFGNLLTSSNYNDNEKKVTGGRNGYGAKLANIFSTKFVVET 180

Query: 174 ARQNTIFSQK--FSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKA--GFDAARLL 228
                    K  F++ +           + ++  T ITF PD   FG +         + 
Sbjct: 181 CDGKRGRRYKQTFTQNMSKKGQPVITDCKADENWTCITFYPDLARFGMEDLEQESVELMR 240

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           K     A L G+    +   + +  K      + +    G K    T++  R        
Sbjct: 241 KRVYDMAGLLGKTVKVFYNGQRLKVKSFQEYVDMYL---GPKDEGPTRVYER-------- 289

Query: 289 TGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
                         E  IA  E      S+ N I T +GGTH + +   + + +     +
Sbjct: 290 ---------ISDRWEVCIAPTEGQFNQVSFVNAICTSKGGTHVNYISDQVVKYLCD--MI 338

Query: 349 TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
            +  +  ++            ++  I  P F  QTK  L    +    +  L D F    
Sbjct: 339 NKKDKKANVKPFMAKNYLWVFVNCLIENPAFDSQTKDTLTLRASSFGSKCDLPDAFLKK- 397

Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFI 468
           V N      +L +   ++++ L++    +  R T I KL       D     + G  L +
Sbjct: 398 VANCGVVNSILSFASFKADKELKKGDGAKRQRLTGIPKLEDAN---DAGGRNSAGCTLIL 454

Query: 469 VEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
            EGDSA   A    +   R    V PLRGK+LNV  A + +I  N +I ++ Q LG +  
Sbjct: 455 TEGDSAKSLAVAGLSVVGRDRFGVFPLRGKLLNVRDASAAQITGNAEIQNIKQILGLQHG 514

Query: 526 SQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRIT 583
             Y +   LRY  ++IMTD D DG+HI  L++ +F+     L++    L     P+ + T
Sbjct: 515 KVYTDAKSLRYGHLMIMTDQDHDGSHIKGLIMNYFHHFYPSLLKLPGFLVEFITPIIKAT 574

Query: 584 QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRV 643
           +G +++  +     ++  E    H      I  FKGLG   A + K+   +        V
Sbjct: 575 KGKETISFYTMPEYEEWSET---HNTRGWTIKYFKGLGTSTADEAKQYFANIQSHRKEFV 631

Query: 644 EINKDLNSLKDTQDSINKLMGTKADERFKFIQ--ERASFID 682
                    +  + + +K    K ++R +++Q     +F+D
Sbjct: 632 --WDGDADGQALEMAFSK---KKVEDRKQWLQAFSPGTFLD 667


>gi|34396102|gb|AAQ65248.1| DNA gyrase subunit B [Mesoplasma tabanidae]
          Length = 539

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 197/549 (35%), Positives = 297/549 (54%), Gaps = 20/549 (3%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           TD + LHHL  E++DN++DE +AGY   I V+L+ NG +TV DNGRG+P+  H     + 
Sbjct: 2   TDVRGLHHLVWEIVDNSIDEALAGYCTEINVTLEKNGSVTVADNGRGVPIGMH--STGRP 59

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
           T E+I + LHAGGKF  S Y+ SGGLHGVG SVVNALS + +VT+ R   +   +F+ G 
Sbjct: 60  TPEVIFSVLHAGGKFGGSGYKTSGGLHGVGSSVVNALSKKFNVTIYRDKKVNEIEFTNGG 119

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
            L+    +    N+ GT + F PD  IF     F+   + +  +  A L+  +K   +  
Sbjct: 120 KLNIPLTEVGTTNRSGTIVNFLPDDSIFNTT-KFNFTTISERLKESALLNSGLKITITDK 178

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
                     +  E+ F  GL  +++      + I+  +      K+      +++    
Sbjct: 179 -------VNDKFVEYQFENGLVEFVKELSSEFTHITDPVVITGESKRIASEICIQYTE-- 229

Query: 309 CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISA 366
            + N  I  + N + T +GGTH +G +  L R I  YA+  +    +   + S+DL    
Sbjct: 230 -DFNETILGFANNVKTGDGGTHITGFKSGLVRAINDYAKNNKILKDKDPRLDSNDLREGL 288

Query: 367 VGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           V I++V I E   E+ GQTK KL + DA+  VE    D  + +L++N + ATK++E  + 
Sbjct: 289 VAIVTVKIPEDLIEYEGQTKGKLGTPDAKTAVEQVTYDFMNFWLIENKVPATKIIEKAML 348

Query: 425 RSEERLRRRKQREVNRKTAIRKLRLPG--KLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
               R   RK R+  R +  +K       KL           EL++VEGDSAGGSAK  R
Sbjct: 349 ARRAREEARKARQAIRDSKGKKTTRAMLGKLTPAQGRKKEINELYLVEGDSAGGSAKSGR 408

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           +R+ QA+LPLRGK++N   A   ++  N++I  ++ A+G      +   D+ Y KVIIMT
Sbjct: 409 DRTFQAILPLRGKVINSEKAKLTELMKNEEIQTIITAIGAGIGQDFDVSDINYGKVIIMT 468

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKIL 601
           DAD DGAHI +LLLTFFY+ M DLI  KH+F+  PPL+++T    K +Y  DE+    +L
Sbjct: 469 DADTDGAHIQTLLLTFFYRYMKDLIINKHVFIALPPLYKLTFADRKFIYLWDEQELADLL 528

Query: 602 EEFKKHGKG 610
           ++  K+ K 
Sbjct: 529 KQLLKNMKS 537


>gi|321251923|ref|XP_003192225.1| DNA topoisomerase II [Cryptococcus gattii WM276]
 gi|317458693|gb|ADV20438.1| DNA topoisomerase II, putative [Cryptococcus gattii WM276]
          Length = 1377

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 162/721 (22%), Positives = 284/721 (39%), Gaps = 68/721 (9%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKK-SGEIPDSPAFANQSASDNYDASSIRILEGLEPVR 59
           ++D   D   + P +   + +     + E     A +N++AS+ Y     + L   E V 
Sbjct: 67  LSDTGSDAVCSPPKKKTKADDDDGDLNAESSVKAATSNKNASEVY-----QKLSQREHVL 121

Query: 60  MRPGMYIGGTD-----------------------EKALHHLFSEVIDNAMDEVIAGY-AN 95
            RP  YIG  +                             +F E++ NA D  I     +
Sbjct: 122 KRPDTYIGSVEAITQPMWVLNPETKTMMHRPITFVPGFLKIFDEILVNASDNKINDPTMD 181

Query: 96  LIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
            I+V +D     ++V +NGRGIPVE H K       E+I   L AG  FD+   +++GG 
Sbjct: 182 SIKVVIDREKNTVSVYNNGRGIPVEMHTK-EGVMIPELIFGHLLAGSNFDDDQKKLTGGR 240

Query: 155 HGVGISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRP 211
           +G G  + N  S E  V  A    +  + Q FS  +    + K    +  +  T+ITF+P
Sbjct: 241 NGYGAKLANIYSHEFVVETADKVNSKKYKQIFSNNMSKKGIPKITDNKKGEEWTKITFKP 300

Query: 212 DPKIFGDK--AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           D + FG         A L+K     A     VK   + ++    K    ++    +    
Sbjct: 301 DLERFGMDGIDDDTNALLMKRVYDMAGTVKDVKVFLNDERI---KVKNFKQYVEMYLNAS 357

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGT 329
            T         ++    I               E A A  +   +  S+ N+I T +GGT
Sbjct: 358 TTAASEAAGGAAVTKPPIIY------EVANRRWEVAFALSDGEFKQVSFTNSIATTKGGT 411

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           H   +   L   +    ++ +  +A  +    +       ++  I  P F  QTK  L  
Sbjct: 412 HVDMIATQLANKLMD--QIKKKNKAAPVKPFQIKNHMWIFVNALIENPAFDSQTKENLTL 469

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
             +    +  L + F   + +     T +++ V+  +  +  +  ++    K +     +
Sbjct: 470 KSSAFGSKCELSEEFIKKVAK-----TGIIDNVLNWARFKQDQILKKTDGTKRSRISGIV 524

Query: 450 PGKLADCS-QNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSE 505
             + A+ +    +    L + EGDSA   A        R    V PLRGK+LNV  AG +
Sbjct: 525 KLEDANNAGGRNSKNCTLILTEGDSAKALAVSGLAVVGRDEYGVFPLRGKLLNVREAGHD 584

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           +I  N +I  + Q LG +    Y   D LRY  ++IMTD D DG+HI  L++ F      
Sbjct: 585 QIVKNVEIQHIKQILGLKHNQDYASVDSLRYGHLMIMTDQDHDGSHIKGLIINFLDHFYP 644

Query: 565 DLIEQK-HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
            L+     L     P+ ++ +G K +  +     ++   +   +     E   +KGLG  
Sbjct: 645 SLLRIPNFLVEFITPIVKVWKGKKEISFYTMPQYEEWKAQ--NNNGRGWESKYYKGLGTS 702

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE--RASFI 681
            ++  K+   D +K  L    +       +    + NK    KAD+R +++++    +++
Sbjct: 703 TSADAKKYFGDLDKHRLAFETMQ--PEDRQLIDMAFNK---KKADDRKEWLRQFKPGTYL 757

Query: 682 D 682
           D
Sbjct: 758 D 758


>gi|88802816|ref|ZP_01118343.1| DNA topoisomerase IV subunit B [Polaribacter irgensii 23-P]
 gi|88781674|gb|EAR12852.1| DNA topoisomerase IV subunit B [Polaribacter irgensii 23-P]
          Length = 619

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 197/667 (29%), Positives = 318/667 (47%), Gaps = 73/667 (10%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGY 93
           S    Y   +IR L+  E +RMRPGMYIG      + +  ++ L  EV+DN++DE + G 
Sbjct: 2   SQETKYTEDNIRSLDWKEHIRMRPGMYIGKLGDGSSADDGIYILVKEVLDNSIDEYVMGA 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
              IE+S+     +TV D GRGIP+           +  +++ ++ GGK+D+  ++ S G
Sbjct: 62  GKNIEISI-QGSKVTVRDFGRGIPLGK---------VVDVVSKMNTGGKYDSKAFKKSVG 111

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           L+GVG   VNALS    V  +R     S +FS+G  L   +  E+   ++GT+++F PD 
Sbjct: 112 LNGVGTKAVNALSSFFRVESSRDGKSASAEFSQGN-LEQQDFLEESSRRKGTKVSFIPDE 170

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IF     F    + KM +   YL+  +   ++ +K             F+   GLK  L
Sbjct: 171 EIFKKY-KFRNEYVAKMLKYYVYLNPGLTIIFNGEK-------------FFSENGLKDLL 216

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESG 333
           +       ++   I              V    +  + + E  S+ N   T +GGTH++ 
Sbjct: 217 EDNNHQEDMLYPIIHLKG------DDIEVAITHSKTQYSEEYHSFVNGQHTTQGGTHQTA 270

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA- 392
            R A+ + I+++          +  + D+  S +  +++ + EP F  QTKTKL S D  
Sbjct: 271 FREAIVKTIREFYG-------KNFEASDVRKSIISAIAIKVMEPIFESQTKTKLGSTDMG 323

Query: 393 ------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
                 +  + + L+   D+YL +NP  +  L   +++  +ER      R++ +  A + 
Sbjct: 324 GKLPTVRTYINDFLKTKLDNYLHKNPAVSDMLQRKIMQAEKERKELSGIRKLAKDRAKKS 383

Query: 447 LRLPGKLADCSQN-------IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
                KL DC  +           T LFI EGDSA GS  ++RN + QAV  L+GK LN 
Sbjct: 384 SLHNKKLRDCRIHLGDIKKENYLETTLFITEGDSASGSITKSRNVNTQAVFSLKGKPLNS 443

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
                + +  N++   L  AL          EDLRY  ++I TDADVDG HI  LL+TFF
Sbjct: 444 FGLSKKIVYENEEFNLLQAALNIE----DGIEDLRYNNIVIATDADVDGMHIRLLLITFF 499

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
            Q   +LI++ HL+++  PLFR+    ++ Y + +E K   + +     KGK EI+RFKG
Sbjct: 500 LQFFPELIKEGHLYILETPLFRVRNKKQTFYCYSQEEKNAAIAKL----KGKPEITRFKG 555

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679
           LGE+  ++      D     L  V ++K++      +  +   MG    +R KFI E   
Sbjct: 556 LGEISPNEFVHFIGD--DIRLDPVMLDKEM----SIEQMLEFYMGKNTPDRQKFIIENLK 609

Query: 680 FIDDVGT 686
              ++ T
Sbjct: 610 V--ELDT 614


>gi|86133355|ref|ZP_01051937.1| DNA topoisomerase IV subunit B [Polaribacter sp. MED152]
 gi|85820218|gb|EAQ41365.1| DNA topoisomerase IV subunit B [Polaribacter sp. MED152]
          Length = 619

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 197/667 (29%), Positives = 324/667 (48%), Gaps = 75/667 (11%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGY 93
           S    Y   +IR L+  E +RMRPGMYIG      + +  ++ L  EV+DN++DE + G 
Sbjct: 2   SKETKYTEDNIRSLDWKEHIRMRPGMYIGKLGDGSSADDGIYILVKEVLDNSIDEYVMGA 61

Query: 94  ANLIEVSLDGNGF-LTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
              IE+S+   G  +TV D GRGIP+           +  +++ ++ GGK+D+  ++ S 
Sbjct: 62  GKTIEISIH--GSKVTVRDYGRGIPLGK---------VVDVVSKMNTGGKYDSKAFKKSV 110

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GL+GVG   VNALS    V  +R+    S +FS+G   +    + +   ++GT+++F PD
Sbjct: 111 GLNGVGTKAVNALSSYFRVESSREGKSASAEFSQGNLENEEFLE-ETSRRKGTKVSFIPD 169

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
             IF +   F    + KM ++  YL+  +   ++ +K             F+   GLK  
Sbjct: 170 ETIFKNY-KFRNEYVAKMLKNYVYLNPGLTIIFNGEK-------------FFSKNGLKDL 215

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHES 332
           L+       ++   I              +    +  + + E  S+ N   T +GGTH+S
Sbjct: 216 LEDNNNTDDMLYPIIHLKG------DDIEIAVTHSKTQYSEEYYSFVNGQHTTQGGTHQS 269

Query: 333 GLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
             R A+ + ++++          S  + D+  S +  +++ + EP F  QTKTKL S + 
Sbjct: 270 AFREAIVKTVREFYG-------KSFEASDIRKSIIAAIAIKVMEPVFESQTKTKLGSTEM 322

Query: 393 -------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIR 445
                  +  + + ++   D+YL +NP  A KLL+ +++  +ER      R++ R  A +
Sbjct: 323 GGELPTVRTYINDFVKTKLDNYLHKNPEVADKLLKKIVQAEKERKELSGIRKLARDRAKK 382

Query: 446 KLRLPGKLADCSQN-------IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
                 KL DC  +           T LFI EGDSA GS  ++RN + QAV  L+GK LN
Sbjct: 383 ASLHNKKLRDCRIHLGDIKKENYLETTLFITEGDSASGSITKSRNVNTQAVFSLKGKPLN 442

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
                 + +  N++   L  AL          EDLRY  ++I TDADVDG HI  LL+TF
Sbjct: 443 SYGLSKKIVYENEEFNLLQAALNIEDGL----EDLRYNNIVIATDADVDGMHIRLLLITF 498

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           F Q   +LI++ HL+++  PLFR+    ++ Y + +E K++ +E+     KGK EI+RFK
Sbjct: 499 FLQFFPELIKEGHLYILETPLFRVRNKKQTFYCYSDEEKREAIEKL----KGKPEITRFK 554

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           GLGE+  ++      D     L  V ++K++      +  +   MG    +R KFI    
Sbjct: 555 GLGEISPNEFVHFIGD--DIRLDPVMLDKEM----SIEQMLQFYMGKNTPDRQKFIINNL 608

Query: 679 SFIDDVG 685
               ++ 
Sbjct: 609 KV--ELD 613


>gi|163789020|ref|ZP_02183464.1| DNA topoisomerase IV, subunit B [Flavobacteriales bacterium ALC-1]
 gi|159875684|gb|EDP69744.1| DNA topoisomerase IV, subunit B [Flavobacteriales bacterium ALC-1]
          Length = 619

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 189/666 (28%), Positives = 317/666 (47%), Gaps = 73/666 (10%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGY 93
           +   NY   +IR L+  E +RMRPGMYIG      + +  ++ L  EV+DN++DE + G 
Sbjct: 2   AVQSNYTEDNIRSLDWKEHIRMRPGMYIGKLGDGSSPDDGIYILLKEVLDNSIDEFVMGA 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
              IE+S+ G   + V D GRGIP+           +  +++ ++ GGK+D+  ++ S G
Sbjct: 62  GKSIEISIQGE-RVIVRDYGRGIPLGK---------VVDVVSKMNTGGKYDSKAFKKSVG 111

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           L+GVG   VNALS    V   R     S +F  G  L   E  E    ++GT+++F PD 
Sbjct: 112 LNGVGTKAVNALSSYFRVESTRDGKSASAEFELGE-LKDQEFLEDTSRRKGTKVSFVPDD 170

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF +   +    ++KM ++  YL+  +   ++ +K             ++   GLK  L
Sbjct: 171 SIFKNY-KYRNEYVVKMLKNYVYLNPGLTIVFNGEK-------------YFSENGLKDLL 216

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESG 333
              +    ++   I              V    +  + + E  S+ N   T +GGTH + 
Sbjct: 217 SENINESDMLYPIIHLRG------DDIEVAITHSKTQYSEEYHSFVNGQNTTQGGTHLAA 270

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA- 392
            R ++ + ++++          +  + D+  S V  +++ + EP F  QTKTKL S D  
Sbjct: 271 YRESIVKTVREFYG-------KNYDASDIRKSVVTAIAIKVMEPVFESQTKTKLGSTDMG 323

Query: 393 ------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
                 +  + + ++   D++L +NP  A K+   +++   ER      R++ +  A + 
Sbjct: 324 GGLPTVRAYINDFVKTYLDNFLHKNPDTAEKIQRKILQAERERKELSGIRKLAKDRAKKA 383

Query: 447 LRLPGKLADCSQNIAHG-------TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
                KL DC  +           T LFI EGDSA GS  ++R+ + QAV  L+GK LN 
Sbjct: 384 SLHNKKLRDCRVHFGDTKNERNLETTLFITEGDSASGSITKSRDVNTQAVFSLKGKPLNC 443

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
                + +  N++   L  AL          EDLRY  V+I TDADVDG HI  LL+TFF
Sbjct: 444 YGLSKKIVYENEEFNLLQAALNIEESL----EDLRYNNVVIATDADVDGMHIRLLLITFF 499

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
            Q   ++I++ HL+++  PLFR+    +++Y + EE +++ +++     K K EI+RFKG
Sbjct: 500 LQFFPEVIKEGHLYILQTPLFRVRNKKETIYCYSEEERREAIQKL----KPKPEITRFKG 555

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679
           LGE+   +            L  V ++KD+      ++ ++  MG     R +FI E   
Sbjct: 556 LGEISPDEFVHFIG--EDIRLDPVMLDKDM----SIEELLSFYMGKNTPTRQEFIIENLK 609

Query: 680 FIDDVG 685
              ++ 
Sbjct: 610 V--ELD 613


>gi|332171253|gb|AEE20508.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Krokinobacter diaphorus 4H-3-7-5]
          Length = 653

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 194/666 (29%), Positives = 317/666 (47%), Gaps = 73/666 (10%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGY 93
           +    Y+  +IR L+  E +RMRPGMYIG      + +  ++ L  EV+DN +DE + G 
Sbjct: 36  TQETQYNEDNIRSLDWKEHIRMRPGMYIGKLGDGSSADDGIYILVKEVLDNCIDEFVMGA 95

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
              IEVS+ G   + V D GRGIP+           +  +++ ++ GGK+D+  ++ S G
Sbjct: 96  GKTIEVSIQGEKVI-VRDYGRGIPLGK---------VVDVVSKMNTGGKYDSRAFKKSVG 145

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           L+GVG   VNALS    V   R     S +F+RG  L+  +  ++   +RGT+++F PD 
Sbjct: 146 LNGVGTKAVNALSSYFRVESTRDAKSASAEFARGE-LTNQDLLDETSRRRGTKVSFVPDA 204

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IF +   F +  + ++ ++  YL+  +   ++ +K             F+   GLK  L
Sbjct: 205 EIFKNF-KFRSEYVERLIKNYVYLNPGLTIVFNGEK-------------FFSENGLKDLL 250

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESG 333
              +     +   I   K E        V    +  + + E  S+ N   T +GGTH++ 
Sbjct: 251 SESIAEGDRLYDIIHL-KGED-----IEVAITHSKSQYSEEYHSFVNGQNTTQGGTHQAA 304

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA- 392
            R ++ + I+++          S  + D+  S V  +S+ + EP F  QTKTKL S D  
Sbjct: 305 FRESIVKTIREFYN-------KSYEASDIRKSIVSAISIKVMEPVFESQTKTKLGSTDMG 357

Query: 393 ------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
                 +  + + L+   D++L +N   A  L   +++   ER      R++ +  A + 
Sbjct: 358 GELPTVRTYINDFLKTALDNFLHKNTPVADALQRKILQAERERKDLSGIRKLAKDRAKKA 417

Query: 447 LRLPGKLADCSQN-------IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
                KL DC  +           T LFI EGDSA GS  ++R+ + QAV  L+GK LN 
Sbjct: 418 NLHNKKLRDCRIHLTDSKKERNLETTLFITEGDSASGSITKSRDVNTQAVFSLKGKPLNS 477

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
                + +  N++   L  AL          EDLRY  ++I TDADVDG HI  LL+TFF
Sbjct: 478 YGLSKKIVYENEEFNLLQAALNIE----ESIEDLRYNNIVIATDADVDGMHIRLLLITFF 533

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
            Q   +LI++ HL+++  PLFR+    ++VY + ++ K   +         K EI+RFKG
Sbjct: 534 LQFFPELIKEGHLYILETPLFRVRNKKETVYCYSDQEKADAMARLGA----KPEITRFKG 589

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679
           LGE+   + +          L  V ++K L      ++ ++  MG    +R KFI E   
Sbjct: 590 LGEISPDEFQ--FFIGEDIRLAPVMLDKALM----IEELLSFYMGKNTPDRQKFIIENLK 643

Query: 680 FIDDVG 685
              ++ 
Sbjct: 644 V--ELD 647


>gi|70704840|gb|AAZ06862.1| DNA gyrase subunit B [Acholeplasma parvum]
 gi|70704870|gb|AAZ06863.1| DNA gyrase subunit B [Acholeplasma parvum]
          Length = 536

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 220/540 (40%), Positives = 316/540 (58%), Gaps = 13/540 (2%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T E  LHHL  E++DN++DE +AGYA+ I + +  +  + V DNGRGIPV  HPK   K 
Sbjct: 1   TGESGLHHLVWEIVDNSIDEALAGYADTITLEILKDNIIRVTDNGRGIPVGTHPK-TGKP 59

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
            +E ILTTLHAGGKFD S+Y++SGGLHGVG SVVNALS+     V     I  Q+F RG 
Sbjct: 60  AVETILTTLHAGGKFDGSSYKVSGGLHGVGASVVNALSEWFIAEVHINGKIHRQRFERGE 119

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
           P++ LE   +  +K+GT ITF  DPK+F +   +D   L    Q  A+L+  +K     D
Sbjct: 120 PVTGLEIIGQT-DKKGTCITFLADPKVFIETTTYDFETLRARVQQLAFLNRNIKIEIIDD 178

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +E       P    +++ GGL  Y+     N++ I+S     + E       ++E AI +
Sbjct: 179 REE-----EPVSYAYHYEGGLLEYIDFLTTNKAKINSTKVYTEKEVDNI---SIEVAIQY 230

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISA 366
            +     I S+ N I T EGG HE G ++AL R + KYA+     K+  + IS+D     
Sbjct: 231 TDTYITNIYSFTNNIPTHEGGMHEDGFKMALNRVLAKYAKDANLLKKDEAFISEDTREGL 290

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             I+SV   +P+F GQTKTKL +++ ++     + +  + +L++NP EA  ++E  +  S
Sbjct: 291 TAIISVKHPDPQFEGQTKTKLGNVEVRQITSQIVGEGLERFLLENPNEAKAIIEKCLLAS 350

Query: 427 EERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
             RL  RK RE  R+ + +  L    KLADC       +EL+IVEGDSAGGSAKQ R   
Sbjct: 351 RARLAARKAREATRRKSPLDALGFASKLADCRSKNPSISELYIVEGDSAGGSAKQGRESE 410

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545
            QA+LPLRGK+LNV  A  ++  +NQ+I+ L+QA+G     ++     RY K++IMTDAD
Sbjct: 411 YQAILPLRGKVLNVEKARIDRALSNQEIISLIQAIGTGFGEEFDGSKARYHKIVIMTDAD 470

Query: 546 VDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605
           VDGAHI +LLLTFF++ +  LI+  +++   PPL++I  G K  Y ++EE   + LE   
Sbjct: 471 VDGAHIRTLLLTFFFRFLRPLIDLGYIYFAQPPLYKIQSGKKIEYVYNEEALPEALERMG 530


>gi|225012783|ref|ZP_03703217.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Flavobacteria bacterium MS024-2A]
 gi|225003057|gb|EEG41033.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Flavobacteria bacterium MS024-2A]
          Length = 620

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 190/663 (28%), Positives = 306/663 (46%), Gaps = 75/663 (11%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           Y   +IR L+  E +RMRPGMYIG      + +  ++ L  EV+DN +DE + G    IE
Sbjct: 7   YTEDNIRSLDWKEHIRMRPGMYIGKLGDGSSPDDGIYILLKEVLDNCIDEFVMGAGKTIE 66

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           +++     +TV D GRGIP+           +  +++ ++ GGK+D+  ++ S GL+GVG
Sbjct: 67  ITI-KESQVTVRDFGRGIPLGK---------VVDVVSKMNTGGKYDSRAFKKSVGLNGVG 116

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
              VNALS    V   R     +  F  G  L+     E+   +RGT++ F PD  IF +
Sbjct: 117 TKAVNALSSSFVVQSNRDKQSKTASFEFGN-LNLDPPAEESSRRRGTKVVFTPDVGIFKN 175

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              +    + +M +   YL+  +    + +K             F    GL   L  +  
Sbjct: 176 Y-KYRLEYVERMIKYYVYLNLGLTIELNGEK-------------FISENGLLDLLTDQTN 221

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
              L    I          +   V    +  + + E  S+ N   T +GGTH++  R  L
Sbjct: 222 ENDLSYPIIHLRG------NDIEVALTHSKTQYSEEYHSFVNGQHTTQGGTHQAAFREGL 275

Query: 339 TRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA------ 392
            + ++ Y          +  + D+  S +  +S+ + EP F  QTKTKL S +       
Sbjct: 276 VKTVRDYFG-------KNYEASDIRKSIISAVSIKVMEPVFESQTKTKLGSTEMGEGMPS 328

Query: 393 -QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
            +  + + L    D++L +N   A  +   +I+   ER      R++ R+ A +      
Sbjct: 329 VRSYIVDFLSTQLDNFLHKNTDVAEAIQRKIIQAERERKDLSGIRKLARERAKKASLHNK 388

Query: 452 KLADCSQNIAH-------GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
           KL DC  ++          + LFI EGDSA GS  ++R+ + QAV  LRGK LN      
Sbjct: 389 KLRDCRVHLPDLKKDRRLDSTLFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSYGMSK 448

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           + +  N++   L  AL          EDLRY  ++I TDADVDG HI  LL+TFF Q   
Sbjct: 449 KIVYENEEFNLLQAALNIEDSL----EDLRYNNIVIATDADVDGMHIRLLLITFFLQFFP 504

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
           +LI++ HL+++  PLFR+    ++ Y + E+ +++ + +      GK EI+RFKGLGE+ 
Sbjct: 505 ELIKEGHLYILQTPLFRVRDKKQTFYCYSEQERREAITKLS----GKPEITRFKGLGEIS 560

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS----F 680
             + K          L  V ++K +     T+  +   MG    +R KFI E       F
Sbjct: 561 PDEFK--FFIGEDIRLDPVMMDKTIT----TEQLLEFYMGKNTPDRQKFIIENLKVELDF 614

Query: 681 IDD 683
           +++
Sbjct: 615 VEE 617


>gi|213646831|ref|ZP_03376884.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
          Length = 469

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 188/478 (39%), Positives = 284/478 (59%), Gaps = 17/478 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVTDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R   I  Q +  G+P +PL       +K GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWPSHETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+        RR +    RK A+    LPGKLAD
Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 467


>gi|73990502|ref|XP_534241.2| PREDICTED: similar to DNA topoisomerase II, beta isozyme [Canis
            familiaris]
          Length = 2041

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 141/696 (20%), Positives = 261/696 (37%), Gaps = 69/696 (9%)

Query: 16   SQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE---- 71
             Q ++ K ++S     + +    S    Y          LE + +RP  YIG  +     
Sbjct: 445  DQNNAAKKEESETANKNDSSKKLSVERVYQKK-----TQLEHILLRPDTYIGSVEPLTQL 499

Query: 72   ------------------KALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN-GFLTVVD 111
                                L+ +F E++ NA D          I+VS+D     +++ +
Sbjct: 500  MWVYDEDVGMNCREVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWN 559

Query: 112  NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171
            NG+GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V
Sbjct: 560  NGKGIPVVEH-KVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTV 618

Query: 172  TVARQNTIFSQK--FSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARL 227
              A +    S K  +   +  +   K +    +  T ITF+PD              A +
Sbjct: 619  ETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKDIVALM 678

Query: 228  LKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEI 287
             +     A     VK  ++  K                  G ++Y+   ++++   +   
Sbjct: 679  TRRAYDLAGSCKGVKVMFNGKKLPV--------------NGFRSYVDLYVKDKLDETGVA 724

Query: 288  FTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
                 E         +  +   E+  +  S+ N+I T +GG H   +   +   + +   
Sbjct: 725  LKVIHEL---ANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIE-VV 780

Query: 348  LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
              +NK  +S+    +       ++  I  P F  QTK  +         +  L + F   
Sbjct: 781  KKKNKAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKCQLSEKFFK- 839

Query: 408  LVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
               N      +L WV  +++   +  K+    + + I+ +       D     +    L 
Sbjct: 840  AASNCGIVESILNWVKFKAQ--TQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLI 897

Query: 468  IVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
            + EGDSA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +G + 
Sbjct: 898  LTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQY 957

Query: 525  RSQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
            +  Y + +    LRY K++IMTD D DG+HI  LL+ F +     L++   L     P+ 
Sbjct: 958  KKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIV 1017

Query: 581  RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
            + ++  + +  +      +  +      +   +I  +KGLG   A + KE   D  +  +
Sbjct: 1018 KASKNKQELSFYSIPEFDEWKKHI--ENQKAWKIKYYKGLGTSTAKEAKEYFADMERHRI 1075

Query: 641  LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
            L                + +K    K D+R +++  
Sbjct: 1076 LF--RYAGPEDDAAITLAFSK---KKIDDRKEWLTN 1106


>gi|149639393|ref|XP_001507216.1| PREDICTED: similar to DNA topoisomerase 2-beta (DNA topoisomerase
           II, beta isozyme) [Ornithorhynchus anatinus]
          Length = 1923

 Score =  409 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 140/696 (20%), Positives = 261/696 (37%), Gaps = 69/696 (9%)

Query: 16  SQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE---- 71
            Q ++ K ++      + +    S    Y          LE + +RP  YIG  +     
Sbjct: 330 DQNNASKKEEMESTNKNDSSKKLSVERVYQKK-----TQLEHILLRPDTYIGSVEPLTQL 384

Query: 72  ------------------KALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN-GFLTVVD 111
                               L+ +F E++ NA D          I++S+D     +++ +
Sbjct: 385 MWVYDEDVGMNCREVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKISIDPESNIISIWN 444

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171
           NG+GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V
Sbjct: 445 NGKGIPVVEH-KVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTV 503

Query: 172 TVARQNTIFSQKFSR--GIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARL 227
             A +    S K +    +  +   K +    +  T ITF+PD              A +
Sbjct: 504 ETACKEYKHSFKQTWVNNMMKTSEPKIKHFEGEDYTCITFQPDLAKFKMDKLDKDIVALM 563

Query: 228 LKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEI 287
            +     A     VK  ++  K                  G ++Y+   ++++   +   
Sbjct: 564 TRRAYDLAGSCKGVKVMFNGKKLPV--------------NGFRSYVDLYVKDKLDETGVA 609

Query: 288 FTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
                E         +  +   E+  +  S+ N+I T +GG H   +   +   + +   
Sbjct: 610 LKVIHEL---ANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQIVGKLIE-VV 665

Query: 348 LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
             +NK  +S+    +       ++  I  P F  QTK  +         +  L + F   
Sbjct: 666 KKKNKAGVSVKPFQVKNHIWVFVNCLIENPTFDSQTKENMTLQPKSFGSKCQLSEKFFK- 724

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
              N      +L WV  +++   +  K+    + + I+ +       D     +    L 
Sbjct: 725 AASNCGIVESILNWVKFKAQ--TQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLI 782

Query: 468 IVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           + EGDSA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +G + 
Sbjct: 783 LTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQY 842

Query: 525 RSQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           +  Y + +    LRY K++IMTD D DG+HI  LL+ F +     L++   L     P+ 
Sbjct: 843 KKSYEDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIV 902

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           + ++  + +  +      +  +  + H     +I  +KGLG   A + KE   D  +  +
Sbjct: 903 KASKNKQELSFYSIPEFDEWKKHMENH--KAWKIKYYKGLGTSTAKEAKEYFADMERHRI 960

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           L                + +K    K D+R +++  
Sbjct: 961 LF--RYAGPEDDAAITLAFSK---KKIDDRKEWLTN 991


>gi|325127116|gb|EGC50071.1| DNA topoisomerase 4 subunit B [Neisseria meningitidis N1568]
          Length = 562

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 205/564 (36%), Positives = 297/564 (52%), Gaps = 25/564 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ Y  SSI +L+GLEPV+ RPGMY   T   +  H+  EVIDNA DE + G+A  I+
Sbjct: 2   AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATAID 58

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154
           V +  +G L+V DNGRGIPV  HP+      +E++ T LHAGGKF+       Y  SGGL
Sbjct: 59  VQIHEDGSLSVRDNGRGIPVGLHPE-EGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213
           HGVG+SV NALS  L VTV R+  I    F+ G  + PL +  K      GT +   PD 
Sbjct: 118 HGVGVSVTNALSSRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRVWPDG 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     +    L ++ ++KA L   V+   +      +       + +++P GLK+YL
Sbjct: 178 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEAHTQTWHYPDGLKSYL 233

Query: 274 QTKLENRS-----LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEG 327
              + +              +       +      +A+ W EE      SY N I T  G
Sbjct: 234 TDLIADAQEAVPIFSCENYISDDHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293

Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           GTHE+GL+ A+   +  +  L     R + + SDD+      +LS  + +P+F GQTK K
Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRGVKVQSDDVFGKTAFVLSARVLDPQFQGQTKDK 353

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L + DA + V     DP + +L QN     K+ E  I +++ R+R    +++ +K     
Sbjct: 354 LTNRDALKLVAAVAGDPLELWLNQNVDFGKKIAELAIRQAQARMRSV--KKIEKKKGSGV 411

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKL DC        ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN      ++
Sbjct: 412 AVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +  N +I D+  A+G          D   LRY K+ I++DADVDG+HI  LLLT FY+  
Sbjct: 472 LFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531

Query: 564 YDLIEQKHLFLISPPLFRITQGTK 587
             L+   H+++  PPLFR+    +
Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQ 555


>gi|228473015|ref|ZP_04057772.1| DNA topoisomerase II domain protein [Capnocytophaga gingivalis ATCC
           33624]
 gi|228275597|gb|EEK14374.1| DNA topoisomerase II domain protein [Capnocytophaga gingivalis ATCC
           33624]
          Length = 617

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 188/657 (28%), Positives = 303/657 (46%), Gaps = 72/657 (10%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            Y   +I+ LE  E VRMRPGMYIG      + +  ++ L  EVIDN++DE + G    I
Sbjct: 12  EYGDDNIQTLEWQEHVRMRPGMYIGKLGDGSSADDGIYILLKEVIDNSIDEFVMGAGKQI 71

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           EV +  +  ++V D GRGIP+           +  +++ ++ GGK+D+  ++ S GL+GV
Sbjct: 72  EVRI-EDNKVSVRDFGRGIPLGK---------VVDVVSKMNTGGKYDSRAFKKSVGLNGV 121

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G   VNALS   +V   R     S  FS G+        +    +RGT + F PD  IF 
Sbjct: 122 GTKAVNALSSYFYVASVRDGQKKSASFSLGVLQEESP-LKASNERRGTLVEFVPDGTIFK 180

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F +  +++M ++  YL+  +   ++ +K             F+   GLK  L    
Sbjct: 181 NY-KFRSEYVVRMLKNYTYLNPGLVIVYNGEK-------------FFSENGLKDLLLEDN 226

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337
                    I     +        +    +  + + +  S+ N   T +GGTH +  R A
Sbjct: 227 NEEDFAYPIIHLRGED------IEIALTHSQSQYSEQYYSFVNGQNTTQGGTHLAAYREA 280

Query: 338 LTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA----- 392
           +   ++ Y             + D+  S +G +S+ + EP F  QTKTKL S +      
Sbjct: 281 IVATLRNYYN-------KPYDASDIRKSIIGAISIKVMEPVFESQTKTKLGSTEMGDGLP 333

Query: 393 --QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
             +  + N ++   D YL + P  A ++ + +++   ER      R++ R  A +     
Sbjct: 334 TVRTYITNFVQKHLDDYLHKQPEIAEEIQKKILQAERERKELSGIRKLARDRAKKVSLHN 393

Query: 451 GKLADC-------SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
            KL DC           A  + LFI EG+SA GS   +R+ + QAV  LRGK LN     
Sbjct: 394 KKLRDCRIHLTDSKHEKALESTLFITEGNSASGSITTSRDANTQAVFSLRGKPLNSFGKT 453

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            + +  N++   L  AL          E+LRY  +++ TDADVDG HI  LL+TFF Q  
Sbjct: 454 KKIVYENEEFNLLQAALDIEDS----IENLRYNNIVLATDADVDGMHIRLLLITFFLQFF 509

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
            +LI++ H++++  PLFR+    +++Y + EE +   +E+ K       EI+RFKGLGE+
Sbjct: 510 PELIKEGHVYILQTPLFRVRNSKETIYCYSEEERIAAIEKLKN-----PEITRFKGLGEI 564

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
              + K          L  V ++K +N     +  ++  MG    ER  FI     +
Sbjct: 565 SPDEFKHFIG--QDMRLDPVMMDKAMN----IEKLLDFYMGNNTPERQDFIINNLKY 615


>gi|325287883|ref|YP_004263673.1| DNA topoisomerase type IIA subunit B region 2 domain-containing
           protein [Cellulophaga lytica DSM 7489]
 gi|324323337|gb|ADY30802.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Cellulophaga lytica DSM 7489]
          Length = 618

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 193/660 (29%), Positives = 314/660 (47%), Gaps = 71/660 (10%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           Y   +IR L+  E +RMRPGMYIG      + +  ++ L  EV+DN +DE + G    IE
Sbjct: 7   YTEDNIRSLDWKEHIRMRPGMYIGKLGDGSSADDGIYILLKEVLDNCIDEFVMGAGKTIE 66

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           +++  +  + V D GRGIP+           +  +++ ++ GGK+D+  ++ S GL+GVG
Sbjct: 67  INI-KDNLVKVRDYGRGIPLGK---------VVDVVSKMNTGGKYDSKAFKKSVGLNGVG 116

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
              VNALS+   V  +R+      +FS+G  ++  E       ++GT+++F PD  IF +
Sbjct: 117 TKAVNALSNFFKVESSREGQSKWAEFSQGNLVAE-EGPVDSSKRKGTKVSFTPDETIFKN 175

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              +    +++M ++  YL+  +   ++ +K             ++   GLK  L+    
Sbjct: 176 Y-KYRNEYVVRMLKNYVYLNPGLTIVFNGEK-------------YFSENGLKDLLEDNNN 221

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
              L+   I              +    +  + + E  S+ N   T +GGTH+S  R A+
Sbjct: 222 VEDLLYPIIHLKG------DDIEIAITHSKTQYSEEYQSFVNGQHTTQGGTHQSAFREAI 275

Query: 339 TRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA------ 392
            + I+ +          +  + D+  S +  +S+ + EP F  QTKTKL S D       
Sbjct: 276 VKTIRDFYG-------KNYEASDIRKSIISAVSIKVMEPVFESQTKTKLGSTDMGGNYPT 328

Query: 393 -QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
            +  + + +    D+YL +NP  A  L   +I+   ER      R++ R  A +      
Sbjct: 329 VRTYINDFVGKYLDNYLHKNPETAEALQRKIIQAERERKDLSGIRKLARDRAKKASLHNK 388

Query: 452 KLADCSQN-------IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
           KL DC  +           + LFI EGDSA GS  ++R+ + QAV  LRGK LN      
Sbjct: 389 KLRDCRVHLGDLKKDRRLESTLFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSYGMSK 448

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           + +  N++   L  AL          EDLRY  ++I TDADVDG HI  LL+TFF Q   
Sbjct: 449 KIVYENEEFNLLQAALNIE----ESMEDLRYNNIVIATDADVDGMHIRLLLITFFLQFFP 504

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
           +LI++ HL+++  PLFR+    ++ Y +  E K + +E+      GK EI+RFKGLGE+ 
Sbjct: 505 ELIKENHLYILQTPLFRVRNKKQTYYCYSPEEKAEAIEKL----TGKPEITRFKGLGEIS 560

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
             + K    D     L  V ++K +      +  ++  MG    +R KFI E      D+
Sbjct: 561 PDEFKHFIGD--DIRLEPVMLDKAM----SIEQLLSFYMGKNTPDRQKFIIENLKVELDL 614


>gi|146321367|ref|YP_001201078.1| DNA gyrase [Streptococcus suis 98HAH33]
 gi|145692173|gb|ABP92678.1| DNA gyrase [Streptococcus suis 98HAH33]
          Length = 528

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 196/531 (36%), Positives = 293/531 (55%), Gaps = 23/531 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS +L V V +   ++ Q++ RG  ++ LE   +  ++ GT + F PDP+IF +
Sbjct: 7   SSVVNALSTQLDVHVYKNGQVYFQEYKRGEVVADLEVVGET-DRSGTTVHFTPDPEIFTE 65

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              FD A+L K  Q  A+L+  +    +  +E  E+        +++ GG+ +Y++   E
Sbjct: 66  TTEFDFAKLNKRIQELAFLNRGLNLSITDKREGVEQTKE-----YHYEGGIASYVEYLNE 120

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVA 337
           N+ +I       + E       TVE A+ +     E   S+ N I T EGGTHE G R A
Sbjct: 121 NKDVIFETPIYTEGEMDDI---TVEVAMQYTTSYHENVVSFANNIHTHEGGTHEQGFRTA 177

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR I  YA+  +   +   ++  +D+      ++SV    P+F GQTKTKL + +  + 
Sbjct: 178 LTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPGPQFEGQTKTKLGNSEVVKI 237

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454
                 D F  +L++NP  A +++E  I  S+ R+  ++ RE   +K+ +    LPGKLA
Sbjct: 238 TNRLFSDAFAEFLLENPQIARRIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLA 297

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS N A  TELFIVEGDSAGGSAK  R+R  QA+LP+RGKILNV  A  +KI  N++I 
Sbjct: 298 DCSSNDAAKTELFIVEGDSAGGSAKSGRDREFQAILPIRGKILNVEKASMDKILANEEIR 357

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            L  A+G    + +     RY+K++IMTDADVDGAHI +LLLT FY+ M  ++E  ++++
Sbjct: 358 SLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGYVYI 417

Query: 575 ISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
             PP++ I  G++   Y       E+  Q  LE     G+ K  I R+KGLGEM   QL 
Sbjct: 418 AQPPIYGIKVGSEIKEYIQPGVNQEQELQDALER-HSTGRSKPTIQRYKGLGEMDDHQLW 476

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   R + RV ++       +     + LMG K + R +FI+E A +
Sbjct: 477 ETTMNPENRLMARVSVDD----AAEADKIFDMLMGDKVEPRREFIEENAVY 523


>gi|300777682|ref|ZP_07087540.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Chryseobacterium
           gleum ATCC 35910]
 gi|300503192|gb|EFK34332.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Chryseobacterium
           gleum ATCC 35910]
          Length = 628

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 197/668 (29%), Positives = 314/668 (47%), Gaps = 72/668 (10%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIA 91
           +Q  +  Y   +IR L+  E +R+RPGMYIG      + +  ++ L  E++DN++DE   
Sbjct: 2   SQEINPTYSEDNIRTLDWQEHIRLRPGMYIGKLGDGSSADDGIYILLKEILDNSIDEFRM 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
                IE+ LD +G +T+ D GRGIP+           +   ++ ++ GGK+D+  ++ S
Sbjct: 62  RAGKRIEIKLD-DGKVTIRDFGRGIPLGK---------VVDAVSKMNTGGKYDSKAFKKS 111

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
            GL+GVG   VNALSD   V   R   + + +FSRG+     E+ ++  ++ GT I+F P
Sbjct: 112 VGLNGVGTKAVNALSDYFRVRSFRDGKMKAAEFSRGMIKENFEE-KETSDRNGTEISFIP 170

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           D +IF     +    + +M ++ AYL+  +K  ++ +              +Y   GLK 
Sbjct: 171 DGEIFL-HFKYRKEYIERMLRNYAYLNPGLKILFNGE-------------TYYSENGLKD 216

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHE 331
            L+ +LE+  L                   V    +   +     S+ N   T +GGTH 
Sbjct: 217 LLEEELESDILYPIVHL-------KDDDIEVAITHSDKSQTETYFSFVNGQNTTQGGTHL 269

Query: 332 SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           +  R A  + ++++          S  + D+  S +  +S+ + EP F  QTKTKL S D
Sbjct: 270 NAFREAYVKTVREFFN-------KSFDASDIRKSIIAAISINVEEPVFESQTKTKLGSND 322

Query: 392 A-------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI 444
                   +  + + L+   D++L +NP  A  +   ++    ER      +++ R+ A 
Sbjct: 323 MGPNGPTVRTFIIDFLKSKLDNFLHKNPEIAEAIQRKILISERERKELSGIQKLARERAK 382

Query: 445 RKLRLPGKLADCSQNIAHGT-------ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
           +      KL DC Q+            ++FI EGDSA GS  ++R+   QAV  L+GK L
Sbjct: 383 KVSLHNKKLRDCRQHYNDQKAERKGDTQIFITEGDSASGSITKSRDVETQAVFSLKGKPL 442

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557
           N      + +  N++   L  AL          EDLRY +VII TDADVDG HI  L++T
Sbjct: 443 NCYGLTKKVVYENEEFNLLQAALNIEESL----EDLRYNQVIIATDADVDGMHIRLLMIT 498

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
           FF Q   DLI+  HL+++  PLFR+    ++ Y + E+ + K L E  K+     EI+RF
Sbjct: 499 FFLQFFPDLIKNGHLYILQTPLFRVRNKKETRYCYTEQERVKALNELGKN----PEITRF 554

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           KGLGE+   + K          L  V + KD    +     +   MG    +R  FI E 
Sbjct: 555 KGLGEISPDEFKHFIG--KDIRLEPVVVGKD----QTIDQLLEFYMGKNTPDRQTFILEN 608

Query: 678 ASFIDDVG 685
               DD  
Sbjct: 609 LVVEDDSD 616


>gi|126341720|ref|XP_001380856.1| PREDICTED: similar to DNA topoisomerase 2-beta (DNA topoisomerase
           II, beta isozyme) [Monodelphis domestica]
          Length = 1756

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 139/696 (19%), Positives = 260/696 (37%), Gaps = 69/696 (9%)

Query: 16  SQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE---- 71
            Q ++ K +++     + +    S    Y          LE + +RP  YIG  +     
Sbjct: 162 DQNNAAKKEETESSNKNDSSKKLSVERVYQKK-----TQLEHILLRPDTYIGSVEPLTQS 216

Query: 72  ------------------KALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN-GFLTVVD 111
                               L+ +F E++ NA D          I++S+D     +++ +
Sbjct: 217 MWVYDEDVGMNCREVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKISIDPESNIISIWN 276

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171
           NG+GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V
Sbjct: 277 NGKGIPVVEH-KVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTV 335

Query: 172 TVARQNTIFSQKFSR--GIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARL 227
             A +    S K +    +  +   K +       T ITF+PD              A +
Sbjct: 336 ETACKEYKHSFKQTWVNNMMKTSEPKVKYFDGDDYTCITFQPDLLKFKMEKLDKDIVALM 395

Query: 228 LKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEI 287
            +     A     VK  ++  K                  G ++Y+   ++++   +   
Sbjct: 396 TRRAYDLAGSCKGVKVMFNGKKLPV--------------NGFRSYVDLYVKDKLDETGVA 441

Query: 288 FTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
                E         +  +   E+  +  S+ N+I T +GG H   +   +   + +   
Sbjct: 442 LKVIHEL---ANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQIVGKLIE-VV 497

Query: 348 LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
             +NK  +S+    +       ++  I  P F  QTK  +         +  L + F   
Sbjct: 498 KKKNKAGVSVKPFQVKNHIWVFVNCLIENPTFDSQTKENMTLQPKSFGSKCQLSEKFFK- 556

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
              N      +L WV  +++   +  K+    + + I+ +       D     +    L 
Sbjct: 557 AASNCGIIESILNWVKFKAQ--TQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLI 614

Query: 468 IVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           + EGDSA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +G + 
Sbjct: 615 LTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQY 674

Query: 525 RSQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           +  Y + +    LRY K++IMTD D DG+HI  LL+ F +     L++   L     P+ 
Sbjct: 675 KKSYEDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIV 734

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           + ++  + +  +      +  +      +   +I  +KGLG   A + KE   D  +  +
Sbjct: 735 KASKNKQELSFYSIPEFDEWKKHI--ENQKAWKIKYYKGLGTSTAKEAKEYFADMERHRI 792

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           L                + +K    K D+R +++  
Sbjct: 793 LF--RYAGPEDDAAITLAFSK---KKIDDRKEWLTN 823


>gi|297491323|ref|XP_002698796.1| PREDICTED: topoisomerase (DNA) II beta 180kDa [Bos taurus]
 gi|296472299|gb|DAA14414.1| topoisomerase (DNA) II beta 180kDa [Bos taurus]
          Length = 1707

 Score =  408 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 141/696 (20%), Positives = 261/696 (37%), Gaps = 69/696 (9%)

Query: 16  SQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE---- 71
            Q ++ K ++S     + +    S    Y          LE + +RP  YIG  +     
Sbjct: 114 DQNNAAKKEESEIANKNDSSKKLSVERVYQKK-----TQLEHILLRPDTYIGSVEPLTQL 168

Query: 72  ------------------KALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN-GFLTVVD 111
                               L+ +F E++ NA D          I+VS+D     +++ +
Sbjct: 169 MWVYDEDVGMNCREVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWN 228

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171
           NG+GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V
Sbjct: 229 NGKGIPVVEH-KVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTV 287

Query: 172 TVARQNTIFSQK--FSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARL 227
             A +    S K  +   +  +   K +    +  T ITF+PD              A +
Sbjct: 288 ETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDRDIVALM 347

Query: 228 LKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEI 287
            +     A     VK  ++  K                  G ++Y+   ++++   +   
Sbjct: 348 TRRAYDLAGSCKGVKVMFNGKKLPV--------------NGFRSYVDLYVKDKLDETGVA 393

Query: 288 FTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
                E         +  +   E+  +  S+ N+I T +GG H   +   +   + +   
Sbjct: 394 LKVIHEL---ANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIE-VV 449

Query: 348 LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
             +NK  +S+    +       ++  I  P F  QTK  +         +  L + F   
Sbjct: 450 KKKNKAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKCQLSEKFFK- 508

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
              N      +L WV  +++   +  K+    + + I+ +       D     +    L 
Sbjct: 509 AASNCGIVESILNWVKFKAQ--TQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLI 566

Query: 468 IVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           + EGDSA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +G + 
Sbjct: 567 LTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQY 626

Query: 525 RSQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           +  Y + +    LRY K++IMTD D DG+HI  LL+ F +     L++   L     P+ 
Sbjct: 627 KKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIV 686

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           + ++  + +  +      +  +      +   +I  +KGLG   A + KE   D  +  +
Sbjct: 687 KASKNKQELSFYSIPEFDEWKKHI--ENQKAWKIKYYKGLGTSTAKEAKEYFADMERHRI 744

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           L                + +K    K D+R +++  
Sbjct: 745 LF--RYAGPEDDAAITLAFSK---KKIDDRKEWLTN 775


>gi|86130199|ref|ZP_01048799.1| DNA topoisomerase IV subunit B [Dokdonia donghaensis MED134]
 gi|85818874|gb|EAQ40033.1| DNA topoisomerase IV subunit B [Dokdonia donghaensis MED134]
          Length = 618

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 192/666 (28%), Positives = 320/666 (48%), Gaps = 73/666 (10%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGY 93
           +    Y+  +IR L+  E +RMRPGMYIG      + +  ++ L  EV+DN +DE + G 
Sbjct: 2   AQETQYNEDNIRSLDWKEHIRMRPGMYIGKLGDGSSADDGIYILVKEVLDNCIDEFVMGA 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
              IE+S+ G   + V D GRGIP+           +  +++ ++ GGK+D+  ++ S G
Sbjct: 62  GKTIEISIQGEKVI-VRDYGRGIPLGK---------VVDVVSKMNTGGKYDSRAFKKSVG 111

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           L+GVG   VNALS+   V   R     S +F RG  L+  +  ++   +RGT+++F PD 
Sbjct: 112 LNGVGTKAVNALSNYFRVESTRDGKSASAEFERGE-LTNQDLLDETSRRRGTKVSFVPDS 170

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IF +   F +  + ++ ++  YL+  +   ++ +K             F+   GLK  L
Sbjct: 171 EIFKNF-KFRSEYVERLIKNYVYLNPGLTIVFNGEK-------------FFSENGLKDLL 216

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESG 333
              +     +   I   K E        V    +  + + E  S+ N   T +GGTH++ 
Sbjct: 217 SESIAEGDRLYDIIHL-KGED-----IEVAITHSKTQYSEEYHSFVNGQHTTQGGTHQAA 270

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA- 392
            R ++ R I+++          +  + D+  S V  +S+ + EP F  QTKTKL S D  
Sbjct: 271 FRESIVRTIREFYG-------KNYEASDIRKSIVSAISIKVMEPVFESQTKTKLGSTDMG 323

Query: 393 ------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
                 +  + + L+   D++L +NP  A  L   +++   ER      R++ ++ A + 
Sbjct: 324 GDLPTVRTYINDFLKTALDNFLHKNPPVADALQRKILQAERERKDLSGIRKLAKERAKKA 383

Query: 447 LRLPGKLADCSQN-------IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
                KL DC  +           T LFI EGDSA GS  ++R+ + QAV  L+GK LN 
Sbjct: 384 SLHNKKLRDCRIHLTDSKKARNLETTLFITEGDSASGSITKSRDVNTQAVFSLKGKPLNS 443

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
                + +  N++   L  AL          EDLRY  ++I TDADVDG HI  LL+TFF
Sbjct: 444 YGLSKKIVYENEEFNLLQAALNIE----ESIEDLRYNNIVIATDADVDGMHIRLLLITFF 499

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
            Q   ++I++ HL+++  PLFR+    +++Y + ++ K   + +       K EI+RFKG
Sbjct: 500 LQFFPEVIKEGHLYILETPLFRVRNKKETIYCYSDQEKADAMAKLGA----KPEITRFKG 555

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679
           LGE+   + +          L  V ++K L      ++ ++  MG    +R KFI E   
Sbjct: 556 LGEISPDEFQ--FFIGEDMRLAPVMLDKALM----IEELLSFYMGKNTPDRQKFIIENLK 609

Query: 680 FIDDVG 685
              ++ 
Sbjct: 610 V--ELD 613


>gi|84394566|ref|ZP_00993271.1| DNA topoisomerase IV subunit B [Vibrio splendidus 12B01]
 gi|84374816|gb|EAP91758.1| DNA topoisomerase IV subunit B [Vibrio splendidus 12B01]
          Length = 535

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 199/551 (36%), Positives = 290/551 (52%), Gaps = 20/551 (3%)

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LH+GGKF N+ Y+ SGGLHGVGISVVNALS  + VTV R   +       G  ++ L 
Sbjct: 1   TKLHSGGKFSNNNYKFSGGLHGVGISVVNALSKRVEVTVRRDGQVHEIALEGGHAVTDLT 60

Query: 195 KKEKVRN-KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
                 +   GT + F PDPK F     F   RL+   ++KA L   ++  +       E
Sbjct: 61  VTGTCGHRNTGTTVHFWPDPKYFDSS-KFSVLRLINNLRAKAVLCPGLEITFVDKVGGEE 119

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP 313
                   ++Y+  GLK YL   ++  +L+  E + G+   +                + 
Sbjct: 120 -------HKWYYEDGLKDYLAEGVKGYTLLPEEPYVGEFVAETEM-ANWAIIWQPEGGDM 171

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSV 372
              SY N + T +GGTH +GLR  L   ++++ E      R + +  DD+      +LSV
Sbjct: 172 ITESYVNLVPTKQGGTHVNGLRQGLLDAMREFCEFRNLLPRGVKLTGDDIFDRCSYVLSV 231

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
            +++P+FAGQTK +L S      V   ++D F  +L + P  A  L E  I  +  R+R 
Sbjct: 232 KMQDPQFAGQTKERLSSRQTAAFVSGVVKDAFSLWLNEKPQLAELLAEACIANAHRRMR- 290

Query: 433 RKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
              ++V RK       LPGKL DCS      TE+F VEGDSAGGSAKQAR+R  QAV+PL
Sbjct: 291 -ASKKVVRKKIASGPALPGKLTDCSVQDLSRTEIFFVEGDSAGGSAKQARDREFQAVMPL 349

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIA 552
           RGKILN     ++++  +Q++ D+  ALG    +      LRY K+ I+ DAD DG HIA
Sbjct: 350 RGKILNTWEVSADQVLASQEVHDISVALGIDPDNDDL-SGLRYGKICILADADSDGLHIA 408

Query: 553 SLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612
           +LL   F +  + L+E  H+++  PPL+RI  G +  YA D+  K  +LE   +  K KI
Sbjct: 409 TLLCALFTRHFHALVEAGHIYVAMPPLYRIDCGKEVFYALDDSEKDGVLERLSQK-KAKI 467

Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERF 671
            + RFKGLGEM   QL+ET MD N R L+++ I+ +      T + ++ L+G K AD+R 
Sbjct: 468 NVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDN----DATNEMMDMLLGKKRADDRR 523

Query: 672 KFIQERASFID 682
            ++Q      +
Sbjct: 524 TWLQTNGDMAE 534


>gi|126666920|ref|ZP_01737896.1| DNA topoisomerase IV subunit B [Marinobacter sp. ELB17]
 gi|126628636|gb|EAZ99257.1| DNA topoisomerase IV subunit B [Marinobacter sp. ELB17]
          Length = 557

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 214/573 (37%), Positives = 312/573 (54%), Gaps = 25/573 (4%)

Query: 116 IPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR 175
           +PV+ H K      +E+IL+ LHAGGKF    Y  SGGLHGVG+SVVNALS  L V + R
Sbjct: 1   MPVDMH-KEEGVPGVELILSRLHAGGKFSEGNYSFSGGLHGVGVSVVNALSTHLEVLIRR 59

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
              +    F+ G  ++ LE  +   +   GTR+ F PD K F     F  +RL    ++K
Sbjct: 60  NGQVHRMTFANGDKVTELEVVDSCGKRNTGTRLKFTPDTKYFDSAN-FSVSRLRHNLRAK 118

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           A L   +   +S +K         EK+E+ +  GL+ YL+  L    ++  E FTG    
Sbjct: 119 AVLCPGLTVTFSQEK-------TGEKDEWCYQDGLRDYLRISLAGSEVVPLEPFTGSFSG 171

Query: 295 KGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVALTRGIKKYAEL-TQN 351
                  V+WAI W  +  +    SY N I T +GGTH +GLR  L   ++ + E  +  
Sbjct: 172 NTEI---VDWAIQWLPDGGDAVAESYVNLIPTAQGGTHVNGLRTGLLEAMRDFCEFRSLL 228

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
            R I +  +D+    V +LS  ++EP+F+GQTK +L S  A   +   ++D F  +L Q+
Sbjct: 229 PRGIKLSPEDIWERVVYVLSFKMQEPQFSGQTKERLSSRQAAAFISGVVKDAFSLWLNQH 288

Query: 412 PIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
              A  L E  I  ++ RL+    ++V RK       LPGKLADCS +    +ELF+VEG
Sbjct: 289 TDVAEILAELFISNAQRRLK--ASKKVARKRITSGPALPGKLADCSGSDTARSELFLVEG 346

Query: 472 DSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE 531
           DSAGGSAKQAR+R  QAV+PL+GKILN     S ++  +Q+I D+  A+G    S     
Sbjct: 347 DSAGGSAKQARDREFQAVMPLKGKILNTWEVDSSEVLASQEIHDIAVAIGVDPGSDEL-A 405

Query: 532 DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYA 591
            LRY KV I+ DAD DG HIA+LL   F +    ++   H+F+  PPL+R+  G ++ YA
Sbjct: 406 GLRYNKVCILADADSDGLHIATLLCALFVKHFRPVVAAGHVFVAMPPLYRVDLGKQTFYA 465

Query: 592 HDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
            DE  KQ I++    ++ +GK+ ++RFKGLGEM   QL+ET M  + R L+ + I     
Sbjct: 466 LDESEKQGIIDRLAAENSRGKVSVTRFKGLGEMNPLQLRETTMAPDTRRLVMLTI----A 521

Query: 651 SLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
              DT   ++ L+G K A +R  +++   +  D
Sbjct: 522 DGDDTDSCMDMLLGKKRAPDRRAWLEAYGNMAD 554


>gi|91217688|ref|ZP_01254645.1| DNA topoisomerase IV subunit B [Psychroflexus torquis ATCC 700755]
 gi|91184192|gb|EAS70578.1| DNA topoisomerase IV subunit B [Psychroflexus torquis ATCC 700755]
          Length = 631

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 195/668 (29%), Positives = 316/668 (47%), Gaps = 71/668 (10%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVI 90
            N +    Y   +I+ L+  E +RMRPGMYIG      + +  ++ L  EV+DN++DE +
Sbjct: 4   KNMAQETKYTEDNIKSLDWKEHIRMRPGMYIGKLGDGSSADDGIYILLKEVLDNSIDEFV 63

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
            G    IEVS+     + V D GRGIP+           +  +++ ++ GGK+D + ++ 
Sbjct: 64  MGSGKTIEVSIQST-KVNVRDYGRGIPLGK---------VVDVVSKMNTGGKYDTNAFKK 113

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           S GL+GVG   VNALS    V  +R     S +F +G  L   E  E+   +RGT++TF 
Sbjct: 114 SVGLNGVGTKAVNALSSYFRVESSRDGKSVSAEFDQGN-LINKEDLEESSRRRGTKVTFI 172

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PD ++   K  +    + KM ++  YL+  +   ++ +K             FY   GLK
Sbjct: 173 PD-EVIFKKYSYRNEYIEKMLKNYVYLNPGLTIMFNGEK-------------FYSEEGLK 218

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330
             L  ++     +   I          +   V    +  + + E  S+ N   T +GGTH
Sbjct: 219 DLLSDRIREEDRLFPIIHLRG------NDIEVAITFSKAQYSEEYHSFVNGQNTTQGGTH 272

Query: 331 ESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           ++  R A+ + I+ + +        +    D+  S V  +S+ + EP F  QTKTKL S 
Sbjct: 273 QTAFREAIVKTIRDFYK-------KNFEPSDIRKSIVSAVSIKVMEPIFESQTKTKLGST 325

Query: 391 DA-------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443
           D        +  + + ++   D+YL +N   A +L   ++   +ER      R++ +  A
Sbjct: 326 DMGEDLPSVRTFILDFMKQELDNYLHKNNETAEQLHRKILRAEKERKDLSGIRKLAKDRA 385

Query: 444 IRKLRLPGKLADCSQNIAHG-------TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
            +      KL DC  ++          T LFI EGDSA GS  ++R+ + QAV  L+GK 
Sbjct: 386 KKSSVHNKKLRDCRIHLEDTKKEGYLETTLFITEGDSASGSITKSRDVNTQAVFSLKGKP 445

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556
           LN      + +  N++   L  AL          EDLRY  ++I TDADVDG HI  L++
Sbjct: 446 LNSYGLSKKIVYENEEFNLLQAALNIEDSL----EDLRYNNIVIATDADVDGMHIRLLII 501

Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616
           TFF Q   +LI++ HL+++  PLFR+    ++ Y + E  +++ L++     +G  EI+R
Sbjct: 502 TFFLQFFPELIKEGHLYILQTPLFRVRDKKQTFYCYSETERREALKKL----RGNPEITR 557

Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           FKGLGE+   + K    D     L  V ++K     K   + +   MG    +R  FI E
Sbjct: 558 FKGLGEISPDEFKNFIGD--DIRLDPVMLDKY----KSIPEILEFYMGKNTPDRQNFIIE 611

Query: 677 RASFIDDV 684
                 D+
Sbjct: 612 NLKVEIDL 619


>gi|149370482|ref|ZP_01890171.1| DNA topoisomerase IV, subunit B [unidentified eubacterium SCB49]
 gi|149356033|gb|EDM44590.1| DNA topoisomerase IV, subunit B [unidentified eubacterium SCB49]
          Length = 616

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 187/663 (28%), Positives = 310/663 (46%), Gaps = 72/663 (10%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           Y   +IR L+  E +RMRPGMYIG      + +  ++ L  EV+DN++DE + G    IE
Sbjct: 6   YTEDNIRSLDWKEHIRMRPGMYIGKLGDGSSADDGIYILLKEVLDNSIDEFVMGAGKTIE 65

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           + +  +  + V D GRGIP+           +  +++ ++ GGK+D+  ++ S GL+GVG
Sbjct: 66  IRI-KDKIVKVRDYGRGIPLGK---------VVDVVSKMNTGGKYDSRAFKKSVGLNGVG 115

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
              VNALS    V   R N     +FS+G         E+   ++GT++TF PD ++   
Sbjct: 116 TKAVNALSSFFKVESHRDNQSKFAEFSQGELKEDSSI-EQSSKRKGTKVTFIPD-ELIFK 173

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              +    + KM +   YL+  +   ++ +K             F    GLK  L+  + 
Sbjct: 174 NYKYRNEYVEKMLRYYVYLNPGLTIDFNGEK-------------FLSENGLKDLLEDNMT 220

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
              ++   I          +   V    +  + + E  S+ N   T +GGTH +  R ++
Sbjct: 221 QEDMLYPVIHLKG------NDIEVALTHSKTQYSEEYHSFVNGQNTTQGGTHLAAYRESV 274

Query: 339 TRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA------ 392
            + I+++          +  + D+  S V  +S+ + EP F  QTKTKL S D       
Sbjct: 275 VKTIREFYG-------KNYDASDIRKSIVSAISIKVMEPVFESQTKTKLGSTDMGGDLPT 327

Query: 393 -QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
            +  + + ++   D++L +NP  A  +   ++    ER      R++ +  A +      
Sbjct: 328 VRTYINDFVKTHLDNFLHKNPAVAEIIQRKILTAERERKELSGIRKLAKDRAKKANLHNK 387

Query: 452 KLADCSQN-------IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
           KL DC  +           + LFI EGDSA GS  ++R+ + QAV  L+GK LN      
Sbjct: 388 KLRDCRIHLGDTKKERNLESTLFITEGDSASGSITKSRDVNTQAVFSLKGKPLNCYGLTK 447

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           + +  N++   L  AL          EDLRY  ++I TDADVDG HI  LL+TFF Q   
Sbjct: 448 KIVYENEEFNLLQAALNIE----ESIEDLRYNNIVIATDADVDGMHIRLLLITFFLQFFP 503

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
           ++I++ HL+++  PLFR+    K++Y + E+ ++  +EE     K K EI+RFKGLGE+ 
Sbjct: 504 EVIKEGHLYILQTPLFRVRNKKKTIYCYSEDERRSAMEEL----KPKPEITRFKGLGEIS 559

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS-FIDD 683
             +            L  V ++K +      ++ +   MG    +R +FI E     +D 
Sbjct: 560 PDEFVHFIG--EDIRLDPVMLDKQM----SIEELLKFYMGKNTPDRQEFIIENLKVELDT 613

Query: 684 VGT 686
           V  
Sbjct: 614 VDA 616


>gi|114586205|ref|XP_516332.2| PREDICTED: DNA topoisomerase II, beta isozyme [Pan troglodytes]
          Length = 1634

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 141/696 (20%), Positives = 260/696 (37%), Gaps = 69/696 (9%)

Query: 16  SQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE---- 71
            Q ++ K ++S     + +    S    Y          LE + +RP  YIG  +     
Sbjct: 35  DQNNAAKKEESETANKNDSSKKLSVERVYQKK-----TQLEHILLRPDTYIGSVEPLTQF 89

Query: 72  ------------------KALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN-GFLTVVD 111
                               L+ +F E++ NA D          I+VS+D     +++ +
Sbjct: 90  MWVYDEDVGMNCREVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWN 149

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171
           NG+GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V
Sbjct: 150 NGKGIPVVEH-KVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTV 208

Query: 172 TVARQNTIFSQK--FSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARL 227
             A +    S K  +   +  +   K +    +  T ITF+PD              A +
Sbjct: 209 ETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKDIVALM 268

Query: 228 LKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEI 287
            +     A     VK  ++  K                  G ++Y+   ++++   +   
Sbjct: 269 TRRAYDLAGSCRGVKVMFNGKKLPV--------------NGFRSYVDLYVKDKLDETGVA 314

Query: 288 FTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
                E         +  +   E+  +  S+ N+I T +GG H   +   +   + +   
Sbjct: 315 LKVIHEL---ANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIE-VV 370

Query: 348 LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
             +NK  +S+    +       ++  I  P F  QTK  +         +  L + F   
Sbjct: 371 KKKNKAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKCQLSEKFFK- 429

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
              N      +L WV  +++   +  K+    + + I+ +       D     +    L 
Sbjct: 430 AASNCGIVESILNWVKFKAQ--TQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLI 487

Query: 468 IVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           + EGDSA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +G + 
Sbjct: 488 LTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQY 547

Query: 525 RSQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           +  Y +      LRY K++IMTD D DG+HI  LL+ F +     L++   L     P+ 
Sbjct: 548 KKSYDDAKSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIV 607

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           + ++  + +  +      +  +      +   +I  +KGLG   A + KE   D  +  +
Sbjct: 608 KASKNKQELSFYSIPEFDEWKKHI--ENQKAWKIKYYKGLGTSTAKEAKEYFADMERHRI 665

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           L                + +K    K D+R +++  
Sbjct: 666 LF--RYAGPEDDAAITLAFSK---KKIDDRKEWLTN 696


>gi|328862532|gb|EGG11633.1| hypothetical protein MELLADRAFT_46846 [Melampsora larici-populina
           98AG31]
          Length = 1259

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 154/724 (21%), Positives = 276/724 (38%), Gaps = 72/724 (9%)

Query: 2   TDDSIDLFSTLPPQSQGSSE--KLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVR 59
           + D   L S          +      +      PA + +SAS  Y     + L  LE V 
Sbjct: 74  SRDENTLHSDDDAGRSEEDDVVAPLPAKSSTSGPAPSKKSASQTY-----QKLTQLEHVL 128

Query: 60  MRPGMYIGGTD-----------------------EKALHHLFSEVIDNAMDEVIAG-YAN 95
            RP  YIG  +                          L+ +  E++ NA D        +
Sbjct: 129 KRPDTYIGSVEAIRQYMWVYDKEKKAMANKEISFVPGLYKIVDEILVNAADNKQRDDKMD 188

Query: 96  LIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
            ++V++D     ++V++NG+GIP+E H +       E+I   L AG  FD+   + +GG 
Sbjct: 189 TLKVTIDPEKNLISVMNNGKGIPIEIH-ETEGCYIPELIFGHLLAGSNFDDDEKKTTGGR 247

Query: 155 HGVGISVVNALSDELHVTVARQN--TIFSQKFSRGIPLSPLEKKEKVRNKR-GTRITFRP 211
           +G G  + N  S E  V  A       + Q F   + +    K  + +     T+I+F+P
Sbjct: 248 NGYGAKLANIYSTEFIVETAEATTCKKYKQTFRNNMSVKEKPKITENKKGDQYTKISFKP 307

Query: 212 DPKIFGDKAG-----FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           D   F   A         A L K     A     VK   + ++    K    +K    + 
Sbjct: 308 DLVKFNLPAENGLAGDMEALLSKRVYDMAGTLKNVKVWLNDERL---KVTTFKKYVEMYT 364

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDE 326
            G+               + I   +           E A    +   +  S+CN+I T +
Sbjct: 365 NGINEVKIPGSPGAGPPKATILYEE------CGKRWEVAFTPSDGQFQQISFCNSIATTK 418

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           GGTH   +   L   I +     ++K  + +    +       ++  +  P F  QTK  
Sbjct: 419 GGTHVDHVVKQLVEKITE--AANKHKAKVKLKPFQVRNHLWVFVNCLVENPAFDSQTKEN 476

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           +    ++   +  + D F   +++     + +++ V++ ++ +     ++    K +   
Sbjct: 477 MTLGVSKFGSKCVMSDEFFKKVMK-----SGVIDSVVDFAKLKEEVALKKTDGSKRSRIT 531

Query: 447 LRLPGKLADCS-QNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASA 502
             +  + A+ +    A    L + EGDSA   A        R N  V PLRGK+LNV  A
Sbjct: 532 GIVKLEDANNAGTKKAAECTLILTEGDSAKSLAVAGLTVIGRDNYGVFPLRGKLLNVREA 591

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
              ++  N +I  + + +G +   +Y   E LRY  ++IMTD D DG+HI  L++ F   
Sbjct: 592 SGTQLLANAEIQHIKKIMGLQQGKKYTSRESLRYGSLMIMTDQDHDGSHIKGLIINFLDY 651

Query: 562 EMYDLIEQ-KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
               L+E    L     P+ ++T+  + +        ++  EE   +G  + +   +KGL
Sbjct: 652 FFPSLLEIPGFLVEFITPIVKVTRKKQELSFFTMPEFERWKEE--NNGGREWKSKYYKGL 709

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ--ERA 678
           G   A   K+     +   +                 + NK    KAD R ++++  E  
Sbjct: 710 GTSDAKDAKKYFSKMSSHRIKFA--PTQPTDRDLIDMAFNK---KKADNRKEWLRGFEPG 764

Query: 679 SFID 682
           + +D
Sbjct: 765 THLD 768


>gi|255535415|ref|YP_003095786.1| DNA topoisomerase IV subunit B [Flavobacteriaceae bacterium
           3519-10]
 gi|255341611|gb|ACU07724.1| Topoisomerase IV subunit B [Flavobacteriaceae bacterium 3519-10]
          Length = 627

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 194/654 (29%), Positives = 300/654 (45%), Gaps = 72/654 (11%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           NY   +IR L+  E +R+RPGMYIG      + +  ++ L  E+IDN++DE +      I
Sbjct: 8   NYSEDNIRTLDWQEHIRIRPGMYIGKLGDGSSADDGIYILLKEIIDNSIDEFVMKSGKRI 67

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           E+ +D  G  T+ D GRGIP+           +   ++ ++ GGK+D+  ++ S GL+GV
Sbjct: 68  EIKIDE-GKATIRDFGRGIPLGK---------VVDAVSKMNTGGKYDSKAFKKSVGLNGV 117

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G   VNALS+   V   R+      +FS+G+      +     ++ GT ITF PD  IF 
Sbjct: 118 GSKAVNALSEYFRVKSVREGKTKIAEFSKGLITRDFPEA-DTSDRNGTEITFIPDSTIFT 176

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F    + KM ++  YL+  +K  ++ +              F+   GLK  LQ ++
Sbjct: 177 -HFKFRKEYIEKMLKNYCYLNPGLKIIFNGE-------------TFFSENGLKDLLQEEI 222

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337
           E   +        +          V    +   ++    S+ N   T +GGTH +  R A
Sbjct: 223 EGEIIYPVVHLKDE-------DIEVAITHSDKSQSETYFSFVNGQNTTQGGTHLNAFREA 275

Query: 338 LTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA----- 392
             + I++Y          +  + D+  S +  +++ + EP F  QTKTKL S +      
Sbjct: 276 YVKTIREYFN-------KNFEAADIRKSIIAAVAIKVIEPVFESQTKTKLGSNEMEPGKE 328

Query: 393 --QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
             +  + N L++  D++L QN   A  +   +I    ER      +++ R+ A +     
Sbjct: 329 TVRTFITNFLKNKLDNFLHQNQEIAEAIHRKIIISERERKELSGIQKLARERAKKVSLHN 388

Query: 451 GKLADCSQNIAHG-------TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
            KL DC  +           T +FI EGDSA GS  ++R+   QAV  L+GK LN     
Sbjct: 389 KKLRDCRHHYNDQKALRKSETMIFITEGDSASGSITKSRDVETQAVFSLKGKPLNCYGLT 448

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
              +  N++   L  AL          EDLRY  VII TDADVDG HI  L++TFF Q  
Sbjct: 449 KRVVYENEEFNLLQAALNIEDSL----EDLRYNHVIIATDADVDGMHIRLLMITFFLQFF 504

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
            DLI+  HL+++  PLFR+    ++ Y + E  + K L E  K+     EI+RFKGLGE+
Sbjct: 505 PDLIKNGHLYILQTPLFRVRNKKETRYCYSEPERLKALNELGKN----PEITRFKGLGEI 560

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
              + K          L  V + KD    +     +   MG    +R  FI E 
Sbjct: 561 SPDEFKHFIG--KDIRLEPVVLGKD----QTIDQLLEFYMGKNTPDRQLFILEN 608


>gi|119473123|ref|XP_001258508.1| DNA topoisomerase II [Neosartorya fischeri NRRL 181]
 gi|119406660|gb|EAW16611.1| DNA topoisomerase II [Neosartorya fischeri NRRL 181]
          Length = 1735

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 157/727 (21%), Positives = 279/727 (38%), Gaps = 84/727 (11%)

Query: 9   FSTLPPQSQGSSEKLKKSGEIPDSP-------------AFANQSASDNYDASSIRILEGL 55
            S  PP+    +   KK G  P +                 + +AS+ Y     + L  L
Sbjct: 82  LSQTPPKKVKKAPASKKGGSKPLADVENESFGGDVGDQPAKSTNASEKY-----QKLTQL 136

Query: 56  EPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDNAMDEVIAG 92
           E +  RP  YIG  +                          L+ +F E++ NA D     
Sbjct: 137 EHIIKRPDTYIGSVERTTQFMWVYDSEMEGMKYREVSYVPGLYKIFDEIVVNAADNKQND 196

Query: 93  -YANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
              + I V++D   G ++V +NGRGIP+E H K       E+I   L     +D++  ++
Sbjct: 197 ANMDEIRVTIDRESGEISVWNNGRGIPIEIHAK-EGIYVPELIFGHLLTSSNYDDTQQKV 255

Query: 151 SGGLHGVGISVVNALSDEL--HVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           +GG +G G  + N  S E       +RQ   + Q ++  +      K    +    T++T
Sbjct: 256 TGGRNGFGAKLCNVFSTEFTIETQDSRQKKKYKQTWTNNMSKMGKAKITDAKGDDYTKVT 315

Query: 209 FRPDP-KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
           F+PD  K   +    D   L+K        + +V    +  +     +        Y   
Sbjct: 316 FKPDYAKFGMEGMDDDFEALVKRRVYDLAGTAKVAVKLNGSRIPVRNFKK------YMEM 369

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEG 327
             K   + + E  +    EI T             E      + +    S+ N+I T  G
Sbjct: 370 YTKAIRRERGEEDTNAKDEIITCS------PDPHWEIGFTVSDGSFHQVSFVNSIATTSG 423

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           GTH + +   +   +       +NK   ++    +       ++  I  P F  QTK +L
Sbjct: 424 GTHVNYIADQICARLAD-QVKKKNKNGATLKPAQIRNHIFIFVNALIVNPAFTSQTKEQL 482

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL 447
            +  +Q   +  L + F   +++     T+++  ++  ++ +  +  ++    +      
Sbjct: 483 TTKSSQFGSKCTLEEDFYKKILK-----TEVMNNILHFAQAKADQLLKKTDGGRRTRMNN 537

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGS 504
                         H   L + EGDSA G A   R         V PLRGK+LNV  A  
Sbjct: 538 PKLVDANKAGTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASF 597

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           E+I  NQ+I ++   LG + + +Y +   LRY  ++IMTD D DG+HI  LL+ F   + 
Sbjct: 598 EQISKNQEIQNIKNFLGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINFLQAQF 657

Query: 564 YDLIEQK-HLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
             L++    L     P+ ++ +G     TK          +   EE K   +   E   +
Sbjct: 658 PSLLKIPEFLIEFITPIVKVWKGDPKNPTKQRSFFTMPEYEAWKEEHK--HERGWEHKYY 715

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE- 676
           KGLG       +    D ++       +    +  +  + + +K    KADER +++++ 
Sbjct: 716 KGLGTSTTEDAQVYFRDLDRHLKEFHTMQD--HETELIELAFSK---KKADERKEWLRQF 770

Query: 677 -RASFID 682
              +F+D
Sbjct: 771 KPGTFLD 777


>gi|149729823|ref|XP_001492165.1| PREDICTED: similar to DNA topoisomerase (ATP-hydrolysing) [Equus
           caballus]
          Length = 1630

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 139/696 (19%), Positives = 259/696 (37%), Gaps = 69/696 (9%)

Query: 16  SQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE---- 71
            Q ++ + ++      +      S    Y          LE + +RP  YIG  +     
Sbjct: 34  DQNNAARKEELETANKNDPSKKLSVERVYQKK-----TQLEHILLRPDTYIGSVEPLTQL 88

Query: 72  ------------------KALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN-GFLTVVD 111
                               L+ +F E++ NA D          I+VS+D     +++ +
Sbjct: 89  MWVYDEDVGMNCREVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWN 148

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171
           NG+GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V
Sbjct: 149 NGKGIPVVEH-KVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTV 207

Query: 172 TVARQNTIFSQK--FSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARL 227
             A +    S K  +   +  +   K +    +  T ITF+PD              A +
Sbjct: 208 ETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKDIVALM 267

Query: 228 LKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEI 287
            +     A     VK  ++  K                  G ++Y+   ++++   +   
Sbjct: 268 TRRAYDLAGSCKGVKVMFNGKKLPV--------------NGFRSYVDLYVKDKLDETGVA 313

Query: 288 FTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
                E         +  +   E+  +  S+ N+I T +GG H   +   +   + +   
Sbjct: 314 LKVIHEL---ANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVSKLIE-VV 369

Query: 348 LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
             +NK  +S+    +       ++  I  P F  QTK  +         +  L + F   
Sbjct: 370 KKKNKAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKCQLSEKFFK- 428

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
              N      +L WV  +++   +  K+    + + I+ +       D     +    L 
Sbjct: 429 AASNCGIVESILNWVKFKAQ--TQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLI 486

Query: 468 IVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           + EGDSA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +G + 
Sbjct: 487 LTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQY 546

Query: 525 RSQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           +  Y + +    LRY K++IMTD D DG+HI  LL+ F +     L++   L     P+ 
Sbjct: 547 KKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIV 606

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           + ++  + +  +      +  +      +   +I  +KGLG   A + KE   D  +  +
Sbjct: 607 KASKNKQELSFYSIPEFDEWKKHI--ENQKAWKIKYYKGLGTSTAKEAKEYFADMERHRI 664

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           L                + +K    K D+R +++  
Sbjct: 665 LF--RYAGPEDDAAITLAFSK---KKIDDRKEWLTN 695


>gi|224045386|ref|XP_002197470.1| PREDICTED: topoisomerase (DNA) II beta 180kDa [Taeniopygia guttata]
          Length = 1622

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 142/697 (20%), Positives = 260/697 (37%), Gaps = 69/697 (9%)

Query: 15  QSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE--- 71
            +Q ++ K + S  I  +      S    Y          LE + +RP  YIG  +    
Sbjct: 26  DNQMNAAKKEDSESINKNDTSKKMSVERVYQKK-----TQLEHILLRPDTYIGSVEPLTQ 80

Query: 72  -------------------KALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN-GFLTVV 110
                                L+ +F E++ NA D          I++S+D     +++ 
Sbjct: 81  LMWVYDEDVGMNCREVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKISIDPESNIISIW 140

Query: 111 DNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELH 170
           +NG+GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  
Sbjct: 141 NNGKGIPVVEH-KVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFT 199

Query: 171 VTVARQNTIFSQK--FSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAAR 226
           V  A +    S K  +   +  +   K +       T ITF+PD              A 
Sbjct: 200 VETACKEYKHSFKQTWMNNMMKTSEPKIKHFEGDDYTCITFQPDLSKFKMEKLDKDIVAL 259

Query: 227 LLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSE 286
           + +     A     VK   +  K                  G ++Y+   ++++   +  
Sbjct: 260 MTRRAYDLAGSCKGVKVMLNGKKLPV--------------NGFRSYVDLYVKDKLDETGV 305

Query: 287 IFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYA 346
                 E         +  +   E+  +  S+ N+I T +GG H   +   +   + +  
Sbjct: 306 ALKVIHE---VVNERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIE-V 361

Query: 347 ELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
              +NK  +S+    +       ++  I  P F  QTK  +         +  L + F  
Sbjct: 362 VKKKNKAGVSVKPFQVKNHIWVFVNCLIENPSFDSQTKENMTLQPKSFGSKCQLSEKFFK 421

Query: 407 YLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
               N      +L WV  +++   +  K+    + + I+ +       D     +    L
Sbjct: 422 -AASNCGIIESILNWVKFKAQ--TQLNKKCSSVKHSKIKGIPKLDDANDAGGKHSLDCTL 478

Query: 467 FIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523
            + EGDSA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +G +
Sbjct: 479 ILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQ 538

Query: 524 TRSQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
            +  Y + +    LRY K++IMTD D DG+HI  LL+ F +     L++   L     P+
Sbjct: 539 YKKSYEDPESLKSLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPI 598

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
            + ++  + +  +      +  +  + H     +I  +KGLG   A + KE   D  +  
Sbjct: 599 VKASKNKQELSFYSIPEFDEWKKHMENH--KAWKIKYYKGLGTSTAKEAKEYFADMERHR 656

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           +L                + +K    K D+R +++  
Sbjct: 657 ILF--RYAGPEDDAAITLAFSK---KKIDDRKEWLTN 688


>gi|269216531|ref|ZP_06160385.1| DNA gyrase, B subunit [Slackia exigua ATCC 700122]
 gi|269130060|gb|EEZ61142.1| DNA gyrase, B subunit [Slackia exigua ATCC 700122]
          Length = 516

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 181/525 (34%), Positives = 283/525 (53%), Gaps = 18/525 (3%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           + V V R  + +   F RG+    L++    +   GT +TF PDP+IF D   +D + L 
Sbjct: 1   MEVDVCRDGSRYRIVFERGVTTEKLKRIGNSKK-TGTIVTFWPDPEIFTDTTVYDYSILQ 59

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
              +  A+L+  +      ++++ E+   P  + F + GG+  +++     +  ++  I+
Sbjct: 60  NRFREMAFLNRGLHIEMHDERDLDEEG-NPHTDSFQYAGGIVDFVKYLNNGKETLNKPIY 118

Query: 289 TGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
                K GT    ++W  ++      + ++ N I T EGGTH  G + ALTR I  YA  
Sbjct: 119 FEAENKDGTVEIAMQWTTSYSANG--VEAFANNINTTEGGTHLEGFKNALTRTINDYARA 176

Query: 349 TQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
                ++  ++  DD       ++SV + EP+F GQTKTKL + + +  V+ A+      
Sbjct: 177 KGLLKEKDSNLTGDDAREGLSAVISVKLHEPQFEGQTKTKLGNTEIRGLVQGAVTKGLAE 236

Query: 407 YLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTE 465
           YL +NP  A +++    +  + R   RK RE+ R+   +    +PGKLADCS       E
Sbjct: 237 YLEENPTPAKRIVNKASQALKAREAARKAREMTRRKGVLDSFSMPGKLADCSSRDPSACE 296

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
           +FIVEGDSAGGSAKQAR+R  QA+LPLRGKILNV  AG  +  ++  I  L+ A+G    
Sbjct: 297 IFIVEGDSAGGSAKQARDRKYQAILPLRGKILNVERAGLHRALSSDTISSLITAIGTNIG 356

Query: 526 SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ- 584
             Y  E  RY ++IIMTDADVDGAHI  LLLTFFY+ M DLI + ++++  PPL+ + + 
Sbjct: 357 EDYDGEKARYHRIIIMTDADVDGAHIRCLLLTFFYRYMPDLINRGYVYIAQPPLYGLKKK 416

Query: 585 ----GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
               G    Y +++E K +++ +       K E+ R+KGLGEM   QL ET M+   RTL
Sbjct: 417 NSASGKILKYIYNDEAKDELVAKL--ENPDKYEMQRYKGLGEMDPQQLWETTMEPETRTL 474

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           L+V+I          + ++++LMG   + R +FIQ+ A  +  + 
Sbjct: 475 LQVDIED----AAAAELAVSELMGELVEPRKEFIQKHARDVRFLD 515


>gi|119584763|gb|EAW64359.1| topoisomerase (DNA) II beta 180kDa, isoform CRA_c [Homo sapiens]
          Length = 1626

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 141/696 (20%), Positives = 261/696 (37%), Gaps = 69/696 (9%)

Query: 16  SQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE---- 71
            Q ++ K ++S     + +    S    Y          LE + +RP  YIG  +     
Sbjct: 27  DQNNAAKKEESETANKNDSSKKLSVERVYQKK-----TQLEHILLRPDTYIGSVEPLTQF 81

Query: 72  ------------------KALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN-GFLTVVD 111
                               L+ +F E++ NA D          I+VS+D     +++ +
Sbjct: 82  MWVYDEDVGMNCREVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWN 141

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171
           NG+GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V
Sbjct: 142 NGKGIPVVEH-KVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTV 200

Query: 172 TVARQNTIFSQK--FSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARL 227
             A +    S K  +   +  +   K +    +  T ITF+PD              A +
Sbjct: 201 ETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKDIVALM 260

Query: 228 LKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEI 287
            +     A     VK  ++  K                  G ++Y+   ++++   +   
Sbjct: 261 TRRAYDLAGSCRGVKVMFNGKKLPV--------------NGFRSYVDLYVKDKLDETGVA 306

Query: 288 FTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
                E         +  +   E+  +  S+ N+I T +GG H   +   +   + +   
Sbjct: 307 LKVIHEL---ANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIE-VV 362

Query: 348 LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
             +NK  +S+    +       ++  I  P F  QTK  +         +  L + F   
Sbjct: 363 KKKNKAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKCQLSEKFFK- 421

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
              N      +L WV  +++   +  K+    + + I+ +       D     +    L 
Sbjct: 422 AASNCGIVESILNWVKFKAQ--TQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLI 479

Query: 468 IVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           + EGDSA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +G + 
Sbjct: 480 LTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQY 539

Query: 525 RSQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           +  Y + +    LRY K++IMTD D DG+HI  LL+ F +     L++   L     P+ 
Sbjct: 540 KKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIV 599

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           + ++  + +  +      +  +      +   +I  +KGLG   A + KE   D  +  +
Sbjct: 600 KASKNKQELSFYSIPEFDEWKKHI--ENQKAWKIKYYKGLGTSTAKEAKEYFADMERHRI 657

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           L                + +K    K D+R +++  
Sbjct: 658 LF--RYAGPEDDAAITLAFSK---KKIDDRKEWLTN 688


>gi|294054869|ref|YP_003548527.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Coraliomargarita akajimensis DSM 45221]
 gi|293614202|gb|ADE54357.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Coraliomargarita akajimensis DSM 45221]
          Length = 616

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 206/662 (31%), Positives = 305/662 (46%), Gaps = 73/662 (11%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYAN 95
           S NY   SI+ L+  E +R+RPGMYIG      + +  ++ L  EVIDN++DE + G+  
Sbjct: 2   SANYTEDSIKSLDWKEHIRLRPGMYIGKLGDGSSQDDGIYILLKEVIDNSIDEFVMGHGK 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
           +IEV++DG   ++V D GRGIP+           L+   + ++ G K+D+  ++ S GL+
Sbjct: 62  IIEVNIDGTH-VSVRDYGRGIPLGK---------LKDCASKINTGAKYDSEAFKKSVGLN 111

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVGI  VNALS E  +   R+       F++G   +  ++ +      GT + F PDP I
Sbjct: 112 GVGIKAVNALSKEFEIQAYREGKTRCVAFAQGEVTTEDKRDKAADADNGTALRFDPDPDI 171

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           FG    F    +  M  + AYL+  +   ++  K             F    GL   L+ 
Sbjct: 172 FGKCR-FREDYVEDMLWNYAYLNSGLTIVYNGKK-------------FKSDKGLHDLLEN 217

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGL 334
           KL+   L                   VE A        E    + N   T  GGTH +  
Sbjct: 218 KLDGDPLYPIIHL---------KDKDVEIAFTHASGYGEDYYSFVNGQHTTMGGTHLAAF 268

Query: 335 RVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA-- 392
           R AL + +K + +           + D+  S    +SV + EP F  QTKTKL SL+   
Sbjct: 269 REALAKTVKDFYK-------KDFDAVDIRTSICAAVSVKVEEPVFESQTKTKLGSLEMGP 321

Query: 393 -----QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL 447
                +  + N ++   D+YL ++P  A +LL  + E    R   +  +++ R+ A +  
Sbjct: 322 KGPTVRTFMNNFIKQALDNYLHRSPETAKELLSKIQESERNRKELKGIQKLARERAKKAK 381

Query: 448 RLPGKLADCSQNIAHGTE------LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
               KL DC  ++    E      LFI EGDSA GS  +AR+ + QAV  L+GK LN   
Sbjct: 382 IHNKKLRDCRIHLDTKKEGRLDSTLFITEGDSASGSITKARDVNTQAVFSLKGKPLNSFG 441

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
              + +  N++   L  AL          + LRY  V+I TDADVDG HI  LL+TFF Q
Sbjct: 442 LTKKVVYENEEFNLLQDALNIEDGL----DGLRYNNVVIATDADVDGMHIRLLLITFFLQ 497

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
              +LI Q HL ++  PLFR+     + Y + +E +   +EE     K K EI+RFKGLG
Sbjct: 498 FFPELIRQGHLHILQTPLFRVRNKKVTRYCYSDEERLAAIEE----CKPKPEITRFKGLG 553

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           E+   +            L  V I K +     T+D +   MG    ER +FI E     
Sbjct: 554 EISPDEFSNFIG--KNIRLDPVIIPKGMT----TKDLLTFYMGKNTPERQEFIIENLRIE 607

Query: 682 DD 683
            D
Sbjct: 608 KD 609


>gi|20141946|sp|Q02880|TOP2B_HUMAN RecName: Full=DNA topoisomerase 2-beta; AltName: Full=DNA
           topoisomerase II, beta isozyme
          Length = 1626

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 141/696 (20%), Positives = 261/696 (37%), Gaps = 69/696 (9%)

Query: 16  SQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE---- 71
            Q ++ K ++S     + +    S    Y          LE + +RP  YIG  +     
Sbjct: 27  DQNNAAKKEESETANKNDSSKKLSVERVYQKK-----TQLEHILLRPDTYIGSVEPLTQF 81

Query: 72  ------------------KALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN-GFLTVVD 111
                               L+ +F E++ NA D          I+VS+D     +++ +
Sbjct: 82  MWVYDEDVGMNCREVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWN 141

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171
           NG+GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V
Sbjct: 142 NGKGIPVVEH-KVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTV 200

Query: 172 TVARQNTIFSQK--FSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARL 227
             A +    S K  +   +  +   K +    +  T ITF+PD              A +
Sbjct: 201 ETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKDIVALM 260

Query: 228 LKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEI 287
            +     A     VK  ++  K                  G ++Y+   ++++   +   
Sbjct: 261 TRRAYDLAGSCRGVKVMFNGKKLPV--------------NGFRSYVDLYVKDKLDETGVA 306

Query: 288 FTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
                E         +  +   E+  +  S+ N+I T +GG H   +   +   + +   
Sbjct: 307 LKVIHEL---ANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIE-VV 362

Query: 348 LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
             +NK  +S+    +       ++  I  P F  QTK  +         +  L + F   
Sbjct: 363 KKKNKAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKCQLSEKFFK- 421

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
              N      +L WV  +++   +  K+    + + I+ +       D     +    L 
Sbjct: 422 AASNCGIVESILNWVKFKAQ--TQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLI 479

Query: 468 IVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           + EGDSA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +G + 
Sbjct: 480 LTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQY 539

Query: 525 RSQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           +  Y + +    LRY K++IMTD D DG+HI  LL+ F +     L++   L     P+ 
Sbjct: 540 KKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIV 599

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           + ++  + +  +      +  +      +   +I  +KGLG   A + KE   D  +  +
Sbjct: 600 KASKNKQELSFYSIPEFDEWKKHI--ENQKAWKIKYYKGLGTSTAKEAKEYFADMERHRI 657

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           L                + +K    K D+R +++  
Sbjct: 658 LF--RYAGPEDDAAITLAFSK---KKIDDRKEWLTN 688


>gi|326335477|ref|ZP_08201664.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Capnocytophaga sp.
           oral taxon 338 str. F0234]
 gi|325692243|gb|EGD34195.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Capnocytophaga sp.
           oral taxon 338 str. F0234]
          Length = 617

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 188/657 (28%), Positives = 302/657 (45%), Gaps = 72/657 (10%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            Y   +I+ LE  E VRMRPGMYIG      + +  ++ L  E IDN++DE + G    I
Sbjct: 12  EYGEDNIQTLEWQEHVRMRPGMYIGKLGDGSSADDGIYILLKEAIDNSIDEFVMGAGKQI 71

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           EV +  +  +TV D GRGIP+           +  +++ ++ GGK+D+  ++ S GL+GV
Sbjct: 72  EVRI-EDNKVTVRDFGRGIPLGK---------VVDVVSKMNTGGKYDSRAFKKSVGLNGV 121

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G   VNALS   +V   R     S  FS G+        E    KRGT +TF PD  IF 
Sbjct: 122 GTKAVNALSSYFYVASVRDGQRKSATFSLGVLQEESP-LEASNEKRGTLVTFVPDGTIFK 180

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F +  +++M ++  YL+  +   ++ +K             F+   GL+  L+   
Sbjct: 181 NY-KFRSEYVVRMLKNYTYLNPGLTIIYNGEK-------------FFSENGLEDLLKEDN 226

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337
                    I     +        +    +  + + +  S+ N   T +GGTH +  R A
Sbjct: 227 NEEDFAYPIIHLSGED------IEIALTHSKSQYSEQYYSFVNGQNTTQGGTHLNAYREA 280

Query: 338 LTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA----- 392
           +   ++ Y             + D+  S +G +S+ + EP F  QTKTKL S +      
Sbjct: 281 IVATLRNYYN-------KPYEASDIRKSIIGAISIKVMEPVFESQTKTKLGSTEMGEGMP 333

Query: 393 --QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
             +  + N ++   D YL + P  A ++   +++   ER      R++ R    +     
Sbjct: 334 SVRTYITNFVQKHLDDYLHKQPGIAEEIQRKILQAERERKELSDIRKLARDRTKKVSLHN 393

Query: 451 GKLADC-------SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
            KL DC           A  + LFI EG+SA GS   +R+ + QAV  LRGK LN     
Sbjct: 394 KKLRDCRIHLTDSKHEQALESTLFITEGNSASGSITTSRDANTQAVFSLRGKPLNSFGKT 453

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            + +  N++   L  AL          E+LRY  +++ TDADVDG HI  LL+TFF Q  
Sbjct: 454 KKIVYENEEFNLLQAALDIEDS----IENLRYNNIVLATDADVDGMHIRLLLITFFLQFF 509

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
            +LI++ H++++  PLFR+    +++Y + +E +   +E+ K       EI+RFKGLGE+
Sbjct: 510 PELIKEGHVYILQTPLFRVRNSKETIYCYTDEERIAAIEKLKN-----PEITRFKGLGEI 564

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
              + K          L  V I+K ++     +  ++  MG    ER  FI     +
Sbjct: 565 SPDEFKHFIG--QDMRLDPVMIDKTMH----IEKLLDFYMGNNTPERQDFIINNLKY 615


>gi|298230862|ref|ZP_06964543.1| DNA gyrase subunit B [Streptococcus pneumoniae str. Canada MDR_19F]
          Length = 539

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 196/547 (35%), Positives = 298/547 (54%), Gaps = 21/547 (3%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KF    Y++SGGLHGVG SVVNALS +L V V +   I  Q++ RG  ++ LE      +
Sbjct: 1   KFGGGGYKVSGGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-D 59

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           + GT + F PDPKIF +   FD  +L K  Q  A+L+  ++   +  ++  E     + +
Sbjct: 60  RTGTTVHFIPDPKIFTETTTFDFDKLNKRIQELAFLNRGLQISITDKRQGLE-----QTK 114

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCN 320
            +++ GG+ +Y++   EN+ +I         E       TVE A+ +     E   S+ N
Sbjct: 115 HYHYEGGIASYVEYINENKDVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFAN 171

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPE 378
            I T EGGTHE G R +LTR I  YA   +  +    ++  +D+      ++SV    P+
Sbjct: 172 NIHTHEGGTHEQGFRTSLTRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQ 231

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQRE 437
           F GQTKTKL + +  +       + F  +L++NP  A +++E  ++        +R +  
Sbjct: 232 FEGQTKTKLGNSEVVKITNRLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREV 291

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
             +K+ +    LPGKLADCS N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKIL
Sbjct: 292 TRKKSGLEISNLPGKLADCSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKIL 351

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557
           NV  A  +KI  N++I  L  A+G    +++     RY+K+++MTDADVDGAHI +LLLT
Sbjct: 352 NVEKASMDKILANEEIRSLFTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLT 411

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKK---HGKGKIE 613
             Y+ M  ++E  ++++  PP++ +  G++   Y      ++  L+E       G+ K  
Sbjct: 412 LIYRYMKPILEAGYVYIAQPPIYGVKVGSEIKEYIQPGADQEIKLQEALARYSEGRTKPT 471

Query: 614 ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKF 673
           I R+KGLGEM   QL ET MD   R + RV ++       +     + LMG + + R +F
Sbjct: 472 IQRYKGLGEMDDHQLWETTMDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREF 527

Query: 674 IQERASF 680
           I+E A +
Sbjct: 528 IEENAVY 534


>gi|145353138|ref|XP_001420882.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581118|gb|ABO99175.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1292

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 153/707 (21%), Positives = 279/707 (39%), Gaps = 78/707 (11%)

Query: 15  QSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD---- 70
           + + +S+K K       +    N+S  + Y          LE + +RP  Y+G  +    
Sbjct: 3   EQKPTSKKPKSPLGNATNKTKNNKSVEEIYQKK-----TQLEHILLRPDTYVGSCERAEE 57

Query: 71  -------------------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTV 109
                                 L+ +F E++ NA D  +       + V +D   G + V
Sbjct: 58  KAWVYDAATKSLTHKQVSFVPGLYKIFDEILVNATDNKVRDPKMKELRVDIDVEQGLIRV 117

Query: 110 VDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDEL 169
            ++G GIPVE H K       E+I   L     +D++  ++ GG +G G  + N  S E 
Sbjct: 118 YNDGNGIPVEMH-KDEGVYVPELIFGHLLTSSNYDDNEKKVVGGRNGYGAKLANIFSTEF 176

Query: 170 HVTVARQN--TIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDK---AGFD 223
            V     +    + Q F   + +    +  K +  +  T ITF+PD + FG +       
Sbjct: 177 IVETCDGSRGKRYRQVFKNNMSVKGEPELSKCKKSENWTCITFKPDFEKFGMESLVNEDV 236

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
           AA + K     A   G+    +   +++  K             G   Y+   L+ ++  
Sbjct: 237 AALMCKRVYDAAGNIGKNTNIYLNGEKLEVK-------------GFSDYVSLYLDGQANA 283

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIK 343
                     +K   R  V   I+   +  +  S+ N I T +GGTH + +   +++ + 
Sbjct: 284 PKIF------EKTMDRWEVCVTISDTAQFQQC-SFVNGICTMKGGTHVNSVADQISQKLL 336

Query: 344 KYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDP 403
           +     + K   ++ +  +       ++  I  P F  QTK  L++   +     A  D 
Sbjct: 337 E-KIQKKEKSCKNLKAFQVKNHLWVFVNALIENPAFDSQTKETLITRPNKFGSAYAPSDA 395

Query: 404 FDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAH 462
               L++     + +++ ++  ++ +  +  ++    +++ +  +       D     + 
Sbjct: 396 IIKKLME-----SGVVDNIMSWAQFKQSKELKKTDGAKRSRLTGIPKLDDANDAGGRNSE 450

Query: 463 GTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
              L + EGDSA   A    +   R    V PLRGK+LNV  A  E+I+NN +I  + Q 
Sbjct: 451 SCTLILTEGDSAKALAVSGLSVVGRDKYGVFPLRGKLLNVRDASHEQIKNNTEINHIKQI 510

Query: 520 LGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISP 577
           LG +   +Y     LRY K++IMTD D DG+HI  LL+ F +     L++    L     
Sbjct: 511 LGLQHGKEYDSAKSLRYGKLMIMTDQDHDGSHIKGLLINFLHAHFPSLLKIPGFLLEFIT 570

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           P+ + T+G +S   +     +   E     G     I  +KGLG   A++ KE     + 
Sbjct: 571 PIIKATKGKQSKVFYTMPEYEAWKE--ANDGTSGWSIKYYKGLGTSTANEAKEYFASLDH 628

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI--QERASFID 682
                V  +     L     S +K    +  +R  ++   E  +F+D
Sbjct: 629 HRKSFVWQSDGDGDL--IDMSFSK---KRVVDRKAWLTAYEPGTFLD 670


>gi|319411861|emb|CBQ73904.1| probable DNA topoisomerase II [Sporisorium reilianum]
          Length = 1513

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 156/725 (21%), Positives = 278/725 (38%), Gaps = 65/725 (8%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           ++  + +   T P  S   SE          + +  ++SAS+ Y     + L  LE +  
Sbjct: 60  LSKRNSNGADTDPDVSMMDSEADVSFQPPAPAKSGTSKSASETY-----QKLSQLEHILK 114

Query: 61  RPGMYIGGTD-----------------------EKALHHLFSEVIDNAMDEVIAG-YANL 96
           RP  YIG  +                           + +F E++ NA D        N 
Sbjct: 115 RPDTYIGSVEKHTEKLWVYDKTKKQMAYRETTYVPGFYKIFDEILVNAADNKARDLNMNH 174

Query: 97  IEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
           ++V ++ + G + V +NG GIPVE H K       E+I   L     +D++  +++GG +
Sbjct: 175 LKVEINRDEGSIMVWNNGHGIPVEMHDK-ERVYIPELIFGHLLTSSNYDDNEAKVTGGRN 233

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQK--FSRGIPLSPLEKKEK-VRNKRGTRITFRPD 212
           G G  + N  S E  V  A        K  FS+ +      K  K  +++  T ITF+PD
Sbjct: 234 GYGAKLANIYSTEFTVETADSKNQCKYKQTFSKNMHDKGKPKITKHSKSEEYTCITFKPD 293

Query: 213 PKIFGD--KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY----FP 266
             +FG         A +LK     A     +K   + +  +  K      E +       
Sbjct: 294 LALFGMESIDDHMEALMLKRVYDMAGTVKGIKVTLNGE-ALKVKNFKQYVEMYVTAINEL 352

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDE 326
           GG     +    +    ++       E         E A A  +      S+ N I T +
Sbjct: 353 GGKTDNTEEGAADVPTGAAPKPAIIYESTVDKGRNWEVAFAVSDGEFRQVSFVNNIATIK 412

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           GG H   +   +   +  +    ++K+   ++ + +       ++  I  P F GQTK  
Sbjct: 413 GGKHVDHVADQVISRLIDHV--KKDKKTGKVMPNQVRQQLWVFVNCQIVNPTFDGQTKET 470

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L    +    +  L D F   +++     + +++ ++  +  +  +  ++    K     
Sbjct: 471 LTLKQSAFGSKWTLTDEFARKVIK-----SGVVDNIVSFARFKQDQALKKTDGHKRTRIT 525

Query: 447 LRLPGKLADCS-QNIAHGTELFIVEGDSAGG---SAKQARNRSNQAVLPLRGKILNVASA 502
                + A+ +    A    L + EGDSA     +      R N  V PLRGK+LNV  A
Sbjct: 526 NIPKLEDANNAGGRKAKDCTLILTEGDSAKSLAVAGIVEVGRDNYGVFPLRGKLLNVREA 585

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
             ++I  N +I  + + LG +   QY + + LRY  ++IMTD D DG+HI  L++ F   
Sbjct: 586 SHDQIMKNAEIKAIKEILGLQHGKQYLDVNSLRYGSIMIMTDQDHDGSHIKGLIINFLDH 645

Query: 562 EMYDLIEQ-KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
               L+     L     P+ +  +G + +        +   +    +G     I  +KGL
Sbjct: 646 FYPSLLRIPGFLVEFITPIVKCRKGKQELSFFTIPEYETWRDSH--NGGKGWHIKYYKGL 703

Query: 621 GEMLASQLKETAMDANKRTLLR-VEINKDLNSLKDTQDSINKLMGTKADERFKFIQE--R 677
           G       K+      K  L   V         +    + NK    KAD+R +++++   
Sbjct: 704 GTSDPQDAKKYFRALEKHKLPFDVT---QEGDRELIDLAFNK---KKADDRKEWLRQFRP 757

Query: 678 ASFID 682
            +++D
Sbjct: 758 GTYLD 762


>gi|119584762|gb|EAW64358.1| topoisomerase (DNA) II beta 180kDa, isoform CRA_b [Homo sapiens]
          Length = 1643

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 140/693 (20%), Positives = 260/693 (37%), Gaps = 69/693 (9%)

Query: 19  SSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE------- 71
           ++ K ++S     + +    S    Y          LE + +RP  YIG  +        
Sbjct: 25  NAAKKEESETANKNDSSKKLSVERVYQKK-----TQLEHILLRPDTYIGSVEPLTQFMWV 79

Query: 72  ---------------KALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN-GFLTVVDNGR 114
                            L+ +F E++ NA D          I+VS+D     +++ +NG+
Sbjct: 80  YDEDVGMNCREVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGK 139

Query: 115 GIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA 174
           GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V  A
Sbjct: 140 GIPVVEH-KVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETA 198

Query: 175 RQNTIFSQK--FSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKM 230
            +    S K  +   +  +   K +    +  T ITF+PD              A + + 
Sbjct: 199 CKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKDIVALMTRR 258

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
               A     VK  ++  K                  G ++Y+   ++++   +      
Sbjct: 259 AYDLAGSCRGVKVMFNGKKLPV--------------NGFRSYVDLYVKDKLDETGVALKV 304

Query: 291 KTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
             E         +  +   E+  +  S+ N+I T +GG H   +   +   + +     +
Sbjct: 305 IHEL---ANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIE-VVKKK 360

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
           NK  +S+    +       ++  I  P F  QTK  +         +  L + F      
Sbjct: 361 NKAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKCQLSEKFFK-AAS 419

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           N      +L WV  +++   +  K+    + + I+ +       D     +    L + E
Sbjct: 420 NCGIVESILNWVKFKAQ--TQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLILTE 477

Query: 471 GDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           GDSA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +G + +  
Sbjct: 478 GDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKS 537

Query: 528 YREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT 583
           Y + +    LRY K++IMTD D DG+HI  LL+ F +     L++   L     P+ + +
Sbjct: 538 YDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKAS 597

Query: 584 QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRV 643
           +  + +  +      +  +      +   +I  +KGLG   A + KE   D  +  +L  
Sbjct: 598 KNKQELSFYSIPEFDEWKKHI--ENQKAWKIKYYKGLGTSTAKEAKEYFADMERHRILF- 654

Query: 644 EINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
                         + +K    K D+R +++  
Sbjct: 655 -RYAGPEDDAAITLAFSK---KKIDDRKEWLTN 683


>gi|187735688|ref|YP_001877800.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Akkermansia muciniphila ATCC BAA-835]
 gi|187425740|gb|ACD05019.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Akkermansia muciniphila ATCC BAA-835]
          Length = 613

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 192/653 (29%), Positives = 292/653 (44%), Gaps = 71/653 (10%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDE-----KALHHLFSEVIDNAMDEVIAGYANLIE 98
           YD +SI+ L+  E +RMRPGMYIG   +       ++ L  EVIDN++DE + G+   I 
Sbjct: 3   YDENSIKTLDWREHIRMRPGMYIGKLGDGASPDDGIYVLLKEVIDNSIDEFVMGFGKKIT 62

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           + +  +G   V D GRGIP+           L      ++ G K+D+  ++ S GL+GVG
Sbjct: 63  IDVTPDGLCEVRDFGRGIPLGK---------LLDCAAKINTGAKYDSDAFKKSVGLNGVG 113

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           I  VNALSD   +   R     S +F RG  +    K        GTR  F  DP IF  
Sbjct: 114 IKAVNALSDFFEIQAYRDGETRSYQFCRGKEIPKGRKDGATEEPNGTRTAFHADPDIFPA 173

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    + KM +  +YL+  +   ++  +             +    GL   L   + 
Sbjct: 174 ATQFRPEYIEKMCRYYSYLNKGLALHFNGRR-------------YISKNGLLDLLAEAMS 220

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
              L       G           +E A     +   E  S+ N   T +GGTH++  R A
Sbjct: 221 EAPLYPIIHLEGH---------DIEVAFTHGGQYGEEHYSFVNGQHTTQGGTHQAAFREA 271

Query: 338 LTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA----- 392
           + + ++ +      K+  +  + D+  S V  +S+ ++EP F  QTKTKL S        
Sbjct: 272 IVKTLRDFF-----KK--NYEAGDIRSSLVAAISIKVKEPVFESQTKTKLGSNTISPEGE 324

Query: 393 --QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
             +  V N +    D+YL +NP  A  L   + +   +R      +++ R+ A +     
Sbjct: 325 TIRTFVGNFIARELDNYLHKNPETAKALEAKIKDSERDRKELSGIQKLARENARKAKIHN 384

Query: 451 GKLADCSQNIAHG------TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
             L DC  +          T LFI EG SA GS   AR+   QAV  LRGK LN      
Sbjct: 385 KNLRDCRVHYNSKHSRAGETTLFITEGISASGSITTARDAETQAVFSLRGKPLNSFGMSR 444

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           + +  N++   L  AL          E+LRY+KV+I TDAD DG HI  LL+TFF Q   
Sbjct: 445 KVVYENEEFNFLQHALNIENGL----EELRYDKVVIATDADDDGMHIRILLMTFFIQFFP 500

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
           +LI + HLF++  PLFR+    +++Y + +  +++ +    K+     EI+RFKGLGE+ 
Sbjct: 501 ELIREGHLFILQTPLFRVRNKQQTIYCYSDAEREEAISLLGKN----PEITRFKGLGEIS 556

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
             + K          L RV +          +D ++  MG    ER ++I   
Sbjct: 557 PQEFKAFIG--EGMRLDRVRLED----SHKVKDLLSFYMGKNTRERQEYILNN 603


>gi|281341246|gb|EFB16830.1| hypothetical protein PANDA_016140 [Ailuropoda melanoleuca]
          Length = 1599

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 141/696 (20%), Positives = 261/696 (37%), Gaps = 69/696 (9%)

Query: 16  SQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE---- 71
            Q ++ K ++S     + +    S    Y          LE + +RP  YIG  +     
Sbjct: 4   DQNNAAKKEESETANKNDSSKKLSVERVYQKK-----TQLEHILLRPDTYIGSVEPLTQL 58

Query: 72  ------------------KALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN-GFLTVVD 111
                               L+ +F E++ NA D          I+VS+D     +++ +
Sbjct: 59  MWVYDEDVGMNCREVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWN 118

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171
           NG+GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V
Sbjct: 119 NGKGIPVVEH-KVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTV 177

Query: 172 TVARQNTIFSQK--FSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARL 227
             A +    S K  +   +  +   K +    +  T ITF+PD              A +
Sbjct: 178 ETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKDIVALM 237

Query: 228 LKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEI 287
            +     A     VK  ++  K                  G ++Y+   ++++   +   
Sbjct: 238 TRRAYDLAGSCKGVKVMFNGKKLPV--------------NGFRSYVDLYVKDKLDETGVA 283

Query: 288 FTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
                E         +  +   E+  +  S+ N+I T +GG H   +   +   + +   
Sbjct: 284 LKVIHEL---ANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIE-VV 339

Query: 348 LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
             +NK  +S+    +       ++  I  P F  QTK  +         +  L + F   
Sbjct: 340 KKKNKAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKCQLSEKFFK- 398

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
              N      +L WV  +++   +  K+    + + I+ +       D     +    L 
Sbjct: 399 AASNCGIVESILNWVKFKAQ--TQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLI 456

Query: 468 IVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           + EGDSA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +G + 
Sbjct: 457 LTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQY 516

Query: 525 RSQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           +  Y + +    LRY K++IMTD D DG+HI  LL+ F +     L++   L     P+ 
Sbjct: 517 KKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIV 576

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           + ++  + +  +      +  +      +   +I  +KGLG   A + KE   D  +  +
Sbjct: 577 KASKNKQELSFYSIPEFDEWKKHI--ENQKAWKIKYYKGLGTSTAKEAKEYFADMERHRI 634

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           L                + +K    K D+R +++  
Sbjct: 635 LF--RYAGPEDDAAITLAFSK---KKIDDRKEWLTN 665


>gi|332043818|gb|EGI80013.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Lacinutrix algicola 5H-3-7-4]
          Length = 619

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 190/660 (28%), Positives = 310/660 (46%), Gaps = 71/660 (10%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           Y   +IR L+  E +RMRPGMYIG      + +  ++ L  EV+DN++DE + G    IE
Sbjct: 7   YTEDNIRSLDWKEHIRMRPGMYIGKLGDGSSPDDGIYILLKEVLDNSIDEFVMGAGKTIE 66

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           +S+     + V D GRGIP+           +  +++ ++ GGK+D+  ++ S GL+GVG
Sbjct: 67  ISV-QGSKVIVRDYGRGIPLGK---------VVDVVSKMNTGGKYDSKAFKKSVGLNGVG 116

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
              VNALS    V  +R     S  F +G  +   E  E+   ++GT+++F PD +I   
Sbjct: 117 TKAVNALSSYFRVESSRDGKSASADFEQGNLVDE-EFLEETSRRKGTKVSFIPD-EIIFK 174

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F +  ++KM ++  YL+  +   ++ +K             +Y   GLK  L  K  
Sbjct: 175 NYKFRSEYVVKMLKNYVYLNPGLTIVFNGEK-------------YYSENGLKDLLAEKTT 221

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
              L+   I              V    +  + + E  S+ N   T +GGTH +  R A+
Sbjct: 222 ETDLLYPIIHLRG------DDIEVALTHSKTQYSEEYNSFVNGQNTTQGGTHLTAFREAV 275

Query: 339 TRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA------ 392
            + I+ +             + D+  S +  +++ + EP F  QTKTKL S D       
Sbjct: 276 VKTIRDFYG-------KQYDASDIRKSIISAIAIKVMEPVFESQTKTKLGSTDMGGDLPT 328

Query: 393 -QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
            +  + + L+   D+YL +N   A K+   +++   ER      R++ +  A +      
Sbjct: 329 VRTYINDFLKTHLDNYLHKNSDTAEKIQRKILQAERERKELSGIRKLAKDRAKKASLHNK 388

Query: 452 KLADCSQNIAHG-------TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
           KL DC  +           T LFI EGDSA GS  ++R+ + QAV  L+GK LN      
Sbjct: 389 KLRDCRVHFGDTKNERNLETTLFITEGDSASGSITKSRDVNTQAVFSLKGKPLNCYGLTK 448

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           + +  N++   L  AL          EDLRY  V+I TDADVDG HI  LL+TFF Q   
Sbjct: 449 KIVYENEEFNLLQAALNIEESL----EDLRYNNVVIATDADVDGMHIRLLLITFFLQFFP 504

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
           ++I++ HL+++  PLFR+    +++Y + EE ++  +E+     K K EI+RFKGLGE+ 
Sbjct: 505 EVIKEGHLYILQTPLFRVRNKKETIYCYSEEERRDAIEKL----KPKPEITRFKGLGEIS 560

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
             +            L  V ++ ++       + ++  MG     R +FI +      D+
Sbjct: 561 PDEFVHFIG--EDIRLDPVMLDDNM----SIDELLSFYMGKNTPTRQEFIIDNLKVELDL 614


>gi|291399726|ref|XP_002716252.1| PREDICTED: DNA topoisomerase II, beta isozyme-like [Oryctolagus
           cuniculus]
          Length = 1667

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 140/696 (20%), Positives = 260/696 (37%), Gaps = 69/696 (9%)

Query: 16  SQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE---- 71
            Q ++ K ++S     +      S    Y          LE + +RP  YIG  +     
Sbjct: 70  DQNNAAKKEESETASKNDTSKKLSVERVYQKK-----TQLEHILLRPDTYIGSVEPLTQL 124

Query: 72  ------------------KALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN-GFLTVVD 111
                               L+ +F E++ NA D          I++S+D     +++ +
Sbjct: 125 MWVYDEEVGMNCREVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKISIDPESNIISIWN 184

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171
           NG+GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V
Sbjct: 185 NGKGIPVVEH-KVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTV 243

Query: 172 TVARQNTIFSQK--FSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARL 227
             A +    S K  +   +  +   K +    +  T ITF+PD              A +
Sbjct: 244 ETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLAKFKMEKLDKDIVALM 303

Query: 228 LKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEI 287
            +     A     VK  ++  K                  G ++Y+   ++++   +   
Sbjct: 304 TRRAYDLAGSCKGVKVMFNGKKLPV--------------NGFRSYVDLYVKDKLDETGVA 349

Query: 288 FTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
                E         +  +   E+  +  S+ N+I T +GG H   +   +   + +   
Sbjct: 350 LKVIHEL---ANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIE-VV 405

Query: 348 LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
             +NK  +S+    +       ++  I  P F  QTK  +         +  L + F   
Sbjct: 406 KKKNKAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKCQLSEKFFK- 464

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
              N      +L WV  +++   +  K+    + + I+ +       D     +    L 
Sbjct: 465 AASNCGIVESILNWVKFKAQ--TQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLI 522

Query: 468 IVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           + EGDSA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +G + 
Sbjct: 523 LTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQY 582

Query: 525 RSQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           +  Y + +    LRY K++IMTD D DG+HI  LL+ F +     L++   L     P+ 
Sbjct: 583 KKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIV 642

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           + ++  + +  +      +  +      +   +I  +KGLG   A + KE   D  +  +
Sbjct: 643 KASKNKQELSFYSIPEFDEWKKHI--ENQKAWKIKYYKGLGTSTAKEAKEYFADMERHRI 700

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           L                + +K    K D+R +++  
Sbjct: 701 LF--RYAGPEDDAAITLAFSK---KKIDDRKEWLTN 731


>gi|296228227|ref|XP_002759705.1| PREDICTED: DNA topoisomerase 2-beta-like [Callithrix jacchus]
          Length = 1620

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 141/693 (20%), Positives = 260/693 (37%), Gaps = 69/693 (9%)

Query: 19  SSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE------- 71
           ++ K ++S     + +    S    Y          LE + +RP  YIG  +        
Sbjct: 25  NAAKKEESETANKNDSSKKLSVERVYQKK-----TQLEHILLRPDTYIGSVEPLTQLMWV 79

Query: 72  ---------------KALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN-GFLTVVDNGR 114
                            L+ +F E++ NA D          I+VS+D     +++ +NG+
Sbjct: 80  YDEDVGMNCREVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGK 139

Query: 115 GIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA 174
           GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V  A
Sbjct: 140 GIPVVEH-KVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETA 198

Query: 175 RQNTIFSQK--FSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKM 230
            +    S K  +   +  +   K +    +  T ITF+PD              A + K 
Sbjct: 199 CKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKDIVALMTKR 258

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
               A     VK  ++  K                  G ++Y+   ++++   +      
Sbjct: 259 AYDLAGSCKGVKVMFNGKKLPV--------------NGFRSYVDLYVKDKLDETGVALKV 304

Query: 291 KTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
             E         +  +   E+  +  S+ N+I T +GG H   +   +   + +     +
Sbjct: 305 IHEL---ANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIE-VVKKK 360

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
           NK  +S+    +       ++  I  P F  QTK  +         +  L + F      
Sbjct: 361 NKAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKCQLSEKFFK-AAS 419

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           N      +L WV  +++   +  K+    + + I+ +       D     +    L + E
Sbjct: 420 NCGIVESILNWVKFKAQ--TQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLILTE 477

Query: 471 GDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           GDSA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +G + +  
Sbjct: 478 GDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKS 537

Query: 528 YREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT 583
           Y + +    LRY K++IMTD D DG+HI  LL+ F +     L++   L     P+ + +
Sbjct: 538 YDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKAS 597

Query: 584 QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRV 643
           +  + +  +      +  +      +   +I  +KGLG   A + KE   D  +  +L  
Sbjct: 598 KNKQELSFYSIPEFDEWKKHI--ENQKAWKIKYYKGLGTSTAKEAKEYFADMERHRILF- 654

Query: 644 EINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
                         + +K    K D+R +++  
Sbjct: 655 -RYAGPEDDAAITLAFSK---KKIDDRKEWLTN 683


>gi|45384180|ref|NP_990413.1| DNA topoisomerase 2-beta [Gallus gallus]
 gi|3122959|sp|O42131|TOP2B_CHICK RecName: Full=DNA topoisomerase 2-beta; AltName: Full=DNA
           topoisomerase II, beta isozyme
 gi|2463529|dbj|BAA22540.1| DNA topoisomeraseII_beta [Gallus gallus]
          Length = 1627

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 141/697 (20%), Positives = 263/697 (37%), Gaps = 69/697 (9%)

Query: 15  QSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE--- 71
            +Q ++ K ++S  +  +      S    Y          LE + +RP  YIG  +    
Sbjct: 31  DNQINASKKEESESVNKNDTSKKMSVERVYQKK-----TQLEHILLRPDTYIGSVEPLTQ 85

Query: 72  -------------------KALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN-GFLTVV 110
                                L+ +F E++ NA D          I++S+D     +++ 
Sbjct: 86  LMWVYDEDVGMNCREVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKISIDPESNIISIW 145

Query: 111 DNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELH 170
           +NG+GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  
Sbjct: 146 NNGKGIPVVEH-KVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFT 204

Query: 171 VTVARQNTIFSQK--FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA--GFDAAR 226
           V  A +    S K  +   +  +   K +       T ITF+PD   F  +       + 
Sbjct: 205 VETACKEYKHSFKQTWMNNMMKTSEPKIKHFEGDDYTCITFQPDLSKFKMENLDKDIVSL 264

Query: 227 LLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSE 286
           + +     A     VK   +  K                  G ++Y+   ++++   +  
Sbjct: 265 MTRRAYDLAGSCKGVKVMLNGKKLPV--------------NGFRSYVDLYVKDKLDETGV 310

Query: 287 IFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYA 346
                 E         +  +   E+  +  S+ N+I T +GG H   +   +   + +  
Sbjct: 311 ALKVIHE---VVNERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIE-V 366

Query: 347 ELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
              +NK  +S+    +       ++  I  P F  QTK  +         +  L + F  
Sbjct: 367 VKKKNKAGVSVKPFQVKNHIWVFVNCLIENPSFDSQTKENMTLQPKSFGSKCQLSEKFFK 426

Query: 407 YLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
               N      +L WV  +++   +  K+    + + I+ +       D     +    L
Sbjct: 427 -AASNCGIIESILNWVKFKAQ--TQLNKKCSSVKHSKIKGIPKLDDANDAGGKHSLDCTL 483

Query: 467 FIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523
            + EGDSA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +G +
Sbjct: 484 ILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQ 543

Query: 524 TRSQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
            +  Y + +    LRY K++IMTD D DG+HI  LL+ F +     L++   L     P+
Sbjct: 544 YKKSYEDPESLKSLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPI 603

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
            + ++  + +  +      +  +  + H     +I  +KGLG   A + KE   D  +  
Sbjct: 604 VKASKNKQELSFYSIPEFDEWKKHMENH--KAWKIKYYKGLGTSTAKEAKEYFADMERHR 661

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           +L                + +K    K D+R +++  
Sbjct: 662 ILF--RYAGPEDDAAITLAFSK---KKIDDRKEWLTN 693


>gi|3869382|gb|AAC77432.1| DNA topoisomerase II beta [Homo sapiens]
          Length = 1598

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 140/693 (20%), Positives = 260/693 (37%), Gaps = 69/693 (9%)

Query: 19  SSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE------- 71
           ++ K ++S     + +    S    Y          LE + +RP  YIG  +        
Sbjct: 2   NAAKKEESETANKNDSSKKLSVERVYQKK-----TQLEHILLRPDTYIGSVEPLTQFMWV 56

Query: 72  ---------------KALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN-GFLTVVDNGR 114
                            L+ +F E++ NA D          I+VS+D     +++ +NG+
Sbjct: 57  YDEDVGMNCREVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGK 116

Query: 115 GIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA 174
           GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V  A
Sbjct: 117 GIPVVEH-KVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETA 175

Query: 175 RQNTIFSQK--FSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKM 230
            +    S K  +   +  +   K +    +  T ITF+PD              A + + 
Sbjct: 176 CKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKDIVALMTRR 235

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
               A     VK  ++  K                  G ++Y+   ++++   +      
Sbjct: 236 AYDLAGSCRGVKVMFNGKKLPV--------------NGFRSYVDLYVKDKLDETGVALKV 281

Query: 291 KTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
             E         +  +   E+  +  S+ N+I T +GG H   +   +   + +     +
Sbjct: 282 IHEL---ANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIE-VVKKK 337

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
           NK  +S+    +       ++  I  P F  QTK  +         +  L + F      
Sbjct: 338 NKAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKCQLSEKFFK-AAS 396

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           N      +L WV  +++   +  K+    + + I+ +       D     +    L + E
Sbjct: 397 NCGIVESILNWVKFKAQ--TQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLILTE 454

Query: 471 GDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           GDSA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +G + +  
Sbjct: 455 GDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKS 514

Query: 528 YREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT 583
           Y + +    LRY K++IMTD D DG+HI  LL+ F +     L++   L     P+ + +
Sbjct: 515 YDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKAS 574

Query: 584 QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRV 643
           +  + +  +      +  +      +   +I  +KGLG   A + KE   D  +  +L  
Sbjct: 575 KNKQELSFYSIPEFDEWKKHI--ENQKAWKIKYYKGLGTSTAKEAKEYFADMERHRILF- 631

Query: 644 EINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
                         + +K    K D+R +++  
Sbjct: 632 -RYAGPEDDAAITLAFSK---KKIDDRKEWLTN 660


>gi|19913408|ref|NP_001059.2| DNA topoisomerase 2-beta [Homo sapiens]
 gi|119584761|gb|EAW64357.1| topoisomerase (DNA) II beta 180kDa, isoform CRA_a [Homo sapiens]
 gi|162317664|gb|AAI56331.1| Topoisomerase (DNA) II beta 180kDa [synthetic construct]
 gi|162318196|gb|AAI57119.1| Topoisomerase (DNA) II beta 180kDa [synthetic construct]
          Length = 1621

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 140/693 (20%), Positives = 260/693 (37%), Gaps = 69/693 (9%)

Query: 19  SSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE------- 71
           ++ K ++S     + +    S    Y          LE + +RP  YIG  +        
Sbjct: 25  NAAKKEESETANKNDSSKKLSVERVYQKK-----TQLEHILLRPDTYIGSVEPLTQFMWV 79

Query: 72  ---------------KALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN-GFLTVVDNGR 114
                            L+ +F E++ NA D          I+VS+D     +++ +NG+
Sbjct: 80  YDEDVGMNCREVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGK 139

Query: 115 GIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA 174
           GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V  A
Sbjct: 140 GIPVVEH-KVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETA 198

Query: 175 RQNTIFSQK--FSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKM 230
            +    S K  +   +  +   K +    +  T ITF+PD              A + + 
Sbjct: 199 CKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKDIVALMTRR 258

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
               A     VK  ++  K                  G ++Y+   ++++   +      
Sbjct: 259 AYDLAGSCRGVKVMFNGKKLPV--------------NGFRSYVDLYVKDKLDETGVALKV 304

Query: 291 KTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
             E         +  +   E+  +  S+ N+I T +GG H   +   +   + +     +
Sbjct: 305 IHEL---ANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIE-VVKKK 360

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
           NK  +S+    +       ++  I  P F  QTK  +         +  L + F      
Sbjct: 361 NKAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKCQLSEKFFK-AAS 419

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           N      +L WV  +++   +  K+    + + I+ +       D     +    L + E
Sbjct: 420 NCGIVESILNWVKFKAQ--TQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLILTE 477

Query: 471 GDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           GDSA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +G + +  
Sbjct: 478 GDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKS 537

Query: 528 YREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT 583
           Y + +    LRY K++IMTD D DG+HI  LL+ F +     L++   L     P+ + +
Sbjct: 538 YDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKAS 597

Query: 584 QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRV 643
           +  + +  +      +  +      +   +I  +KGLG   A + KE   D  +  +L  
Sbjct: 598 KNKQELSFYSIPEFDEWKKHI--ENQKAWKIKYYKGLGTSTAKEAKEYFADMERHRILF- 654

Query: 644 EINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
                         + +K    K D+R +++  
Sbjct: 655 -RYAGPEDDAAITLAFSK---KKIDDRKEWLTN 683


>gi|297287019|ref|XP_001092092.2| PREDICTED: DNA topoisomerase 2-beta [Macaca mulatta]
          Length = 1621

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 140/693 (20%), Positives = 260/693 (37%), Gaps = 69/693 (9%)

Query: 19  SSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE------- 71
           ++ K ++S     + +    S    Y          LE + +RP  YIG  +        
Sbjct: 25  NAAKKEESETANKNDSSKKLSVERVYQKK-----TQLEHILLRPDTYIGSVEPLTQFMWV 79

Query: 72  ---------------KALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN-GFLTVVDNGR 114
                            L+ +F E++ NA D          I+VS+D     +++ +NG+
Sbjct: 80  YDEDVGMNCREVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGK 139

Query: 115 GIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA 174
           GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V  A
Sbjct: 140 GIPVVEH-KVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETA 198

Query: 175 RQNTIFSQK--FSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKM 230
            +    S K  +   +  +   K +    +  T ITF+PD              A + + 
Sbjct: 199 CKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKDIVALMTRR 258

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
               A     VK  ++  K                  G ++Y+   ++++   +      
Sbjct: 259 AYDLAGSCKGVKVMFNGKKLPV--------------NGFRSYVDLYVKDKLDETGVALKV 304

Query: 291 KTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
             E         +  +   E+  +  S+ N+I T +GG H   +   +   + +     +
Sbjct: 305 IHEL---ANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIE-VVKKK 360

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
           NK  +S+    +       ++  I  P F  QTK  +         +  L + F      
Sbjct: 361 NKAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKCQLSEKFFK-AAS 419

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           N      +L WV  +++   +  K+    + + I+ +       D     +    L + E
Sbjct: 420 NCGIVESILNWVKFKAQ--TQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLILTE 477

Query: 471 GDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           GDSA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +G + +  
Sbjct: 478 GDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKS 537

Query: 528 YREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT 583
           Y + +    LRY K++IMTD D DG+HI  LL+ F +     L++   L     P+ + +
Sbjct: 538 YDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKAS 597

Query: 584 QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRV 643
           +  + +  +      +  +      +   +I  +KGLG   A + KE   D  +  +L  
Sbjct: 598 KNKQELSFYSIPEFDEWKKHI--ENQKAWKIKYYKGLGTSTAKEAKEYFADMERHRILF- 654

Query: 644 EINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
                         + +K    K D+R +++  
Sbjct: 655 -RYAGPEDDAAITLAFSK---KKIDDRKEWLTN 683


>gi|37231|emb|CAA48197.1| DNA topoisomerase II [Homo sapiens]
          Length = 1621

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 140/693 (20%), Positives = 260/693 (37%), Gaps = 69/693 (9%)

Query: 19  SSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE------- 71
           ++ K ++S     + +    S    Y          LE + +RP  YIG  +        
Sbjct: 25  NAAKKEESETANKNDSSKKLSVERVYQKK-----TQLEHILLRPDTYIGSVEPLTQFMWV 79

Query: 72  ---------------KALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN-GFLTVVDNGR 114
                            L+ +F E++ NA D          I+VS+D     +++ +NG+
Sbjct: 80  YDEDVGMNCREVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGK 139

Query: 115 GIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA 174
           GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V  A
Sbjct: 140 GIPVVEH-KVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETA 198

Query: 175 RQNTIFSQK--FSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKM 230
            +    S K  +   +  +   K +    +  T ITF+PD              A + + 
Sbjct: 199 CKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKDIVALMTRR 258

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
               A     VK  ++  K                  G ++Y+   ++++   +      
Sbjct: 259 AYDLAGSCRGVKVMFNGKKLPV--------------NGFRSYVDLYVKDKLDETGVALKV 304

Query: 291 KTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
             E         +  +   E+  +  S+ N+I T +GG H   +   +   + +     +
Sbjct: 305 IHEL---ANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIE-VVKKK 360

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
           NK  +S+    +       ++  I  P F  QTK  +         +  L + F      
Sbjct: 361 NKAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKCQLSEKFFK-AAS 419

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           N      +L WV  +++   +  K+    + + I+ +       D     +    L + E
Sbjct: 420 NCGIVESILNWVKFKAQ--TQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLILTE 477

Query: 471 GDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           GDSA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +G + +  
Sbjct: 478 GDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKS 537

Query: 528 YREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT 583
           Y + +    LRY K++IMTD D DG+HI  LL+ F +     L++   L     P+ + +
Sbjct: 538 YDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKAS 597

Query: 584 QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRV 643
           +  + +  +      +  +      +   +I  +KGLG   A + KE   D  +  +L  
Sbjct: 598 KNKQELSFYSIPEFDEWKKHI--ENQKAWKIKYYKGLGTSTAKEAKEYFADMERHRILF- 654

Query: 644 EINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
                         + +K    K D+R +++  
Sbjct: 655 -RYAGPEDDAAITLAFSK---KKIDDRKEWLTN 683


>gi|94264175|ref|ZP_01287972.1| DNA topoisomerase II:ATP-binding region, ATPase-like [delta
           proteobacterium MLMS-1]
 gi|94269557|ref|ZP_01291494.1| DNA topoisomerase II:ATP-binding region, ATPase-like [delta
           proteobacterium MLMS-1]
 gi|93451169|gb|EAT02088.1| DNA topoisomerase II:ATP-binding region, ATPase-like [delta
           proteobacterium MLMS-1]
 gi|93455433|gb|EAT05631.1| DNA topoisomerase II:ATP-binding region, ATPase-like [delta
           proteobacterium MLMS-1]
          Length = 614

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 186/656 (28%), Positives = 312/656 (47%), Gaps = 67/656 (10%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAG 92
            S S  YD S I+ L  LE +RMRPGMYIG        +  ++ L  EVIDN +DE I G
Sbjct: 2   TSPSAVYDESKIKTLSSLEHIRMRPGMYIGRLGNGSHPDDGIYILLKEVIDNGVDEFIMG 61

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
               I+++L  +  +T+ D GRGIP+           +E + + ++ G K++   ++ S 
Sbjct: 62  AGRAIDIALADDNVVTIRDYGRGIPLGK--------LVECV-SVINTGAKYNTDAFQFSV 112

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GL+GVG   VNA+S    VT  R       KF+RG+ ++  E+  + R   GT + FRPD
Sbjct: 113 GLNGVGTKAVNAMSSRFVVTSFRDGEFARAKFARGVLVN--EESGRSREPNGTLVEFRPD 170

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            ++F +   F+   + +  +  +YL+  +   +  +              FY   GL   
Sbjct: 171 GEMFPEY-AFNRDFIRRRLKRYSYLNAGLTLNFDGE-------------SFYSENGLLDL 216

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           L ++    SL                  TVE+A +  +       S+ N   T EGGTH 
Sbjct: 217 LASETSGTSLYEPIYH---------REKTVEFAFSHTDGYGESYFSFVNGTYTAEGGTHL 267

Query: 332 SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           S  R  L +G+ +YA              D+    VG ++V +REP F  QTK KL + D
Sbjct: 268 SAFREGLLKGVNEYAG-------KKFDGADVREGVVGAVAVKVREPIFESQTKNKLGNAD 320

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
            +  +  A+R+    +L +N   A  +++ + + +  R   +  R+  +  A +      
Sbjct: 321 IRGEIVTAVREAVSAFLYKNTDIAELVIDKIQQSARVRKELQHVRKEAKAKARKVALKIP 380

Query: 452 KLADCSQNIAH--------GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +L DC  + A            +F+ EG SA GS   AR+   QAV  L+GK LNV    
Sbjct: 381 QLKDCKYHPAPGKPSPAGRENMVFLTEGQSASGSIVSARDPMTQAVFSLKGKPLNVFGQP 440

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
              +  N ++ ++++AL            LR++K+II TDADVDG HI +LLLTFF    
Sbjct: 441 MALLYKNDEMYNIMRALDVE----ESIGRLRFDKIIIATDADVDGLHIRNLLLTFFLHYF 496

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK--IEISRFKGLG 621
             L+++ H++++  P++R+    ++ Y + E+ +++  ++    GK +  +E++RFKGLG
Sbjct: 497 ESLVKRGHVYILETPIYRVRNKEQTFYCYTEKERREADQKLAGRGKTRRPVEVTRFKGLG 556

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           E+   + K+     ++  L +V+I+    +L +    +   MG     R ++I   
Sbjct: 557 EISPKEFKQFIG--SEMRLQQVDID----TLSEVPRVLEFYMGKNTPSRREYIMSH 606


>gi|325954943|ref|YP_004238603.1| DNA topoisomerase type IIsubunit alpha B region 2 domain protein
           [Weeksella virosa DSM 16922]
 gi|323437561|gb|ADX68025.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Weeksella virosa DSM 16922]
          Length = 624

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 201/663 (30%), Positives = 308/663 (46%), Gaps = 72/663 (10%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDE 88
                S++  Y   +IR L+  E +RMRPGMYIG      + +  ++ L  E+IDN++DE
Sbjct: 7   PLEQDSSTVKYTEDNIRTLDWREHIRMRPGMYIGKLGDGSSQDDGIYILLKEIIDNSIDE 66

Query: 89  VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148
            + G    IE+ L     +T+ D GRGIP+               ++ ++ GGK+D+  +
Sbjct: 67  FVMGTGKTIEIHLREE-EVTIRDYGRGIPLGKM---------VDAVSKMNTGGKYDSQAF 116

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           + S GL+GVG   VNALS    V   R       +FS+G  +   E+++    +RGT+IT
Sbjct: 117 KKSVGLNGVGTKAVNALSSYFRVQSVRDGRTRIAEFSKGE-IMQQEEEKDTTLRRGTKIT 175

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F PD  IF     F    ++KM ++  YL+  ++  ++ ++             FY   G
Sbjct: 176 FIPDKTIFL-HFKFRKEYIVKMLKNYVYLNPGLRIIFNGEE-------------FYSENG 221

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGG 328
           LK  LQ  +E   +       G+          +    +    +    S+ N   T +GG
Sbjct: 222 LKDLLQDNIEEEVIYDVIHLKGE-------DIEIAITHSSKSYSETYYSFVNGQNTTQGG 274

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           TH +  + A+ + ++++          +    D+  S +G +S+ + EP F  QTKTKL 
Sbjct: 275 THLAAFKEAVVKTLREFYN-------KNYDPSDIRKSIIGAISIKVIEPVFESQTKTKLG 327

Query: 389 SLDA-------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           S D        +  V + ++   D+YL +NP  A  +   + +   ER      R++ R+
Sbjct: 328 STDMGPDMVTVRTFVNDFIKTNLDNYLHKNPDVAQSIERKIKQSETERKELSGIRKLARE 387

Query: 442 TAIRKLRLPGKLADCSQNIAHGT-------ELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
            A +      KL DC Q+  +          LFI EGDSA GS  ++R+   QAV  LRG
Sbjct: 388 RAKKVSLHNKKLRDCRQHYNNPKDEARLDSTLFITEGDSASGSITKSRDVETQAVFSLRG 447

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           K LN      + +  N++   L  AL          EDLRY  V+I TDADVDG HI  L
Sbjct: 448 KPLNSYGLTKKIVYENEEFNLLQAALNIEDSL----EDLRYNNVVIATDADVDGMHIRLL 503

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           L+TFF Q   +LI + HL+++  PLFR+    ++ Y + EE + K LEE  K+     EI
Sbjct: 504 LITFFLQFFPELIREGHLYILQTPLFRVRNKKETRYCYTEEERLKALEELGKN----PEI 559

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
           +RFKGLGE+   + K          L  V I KD       Q  +   MG     R +FI
Sbjct: 560 TRFKGLGEISPDEFKHFIG--KDIRLEPVMIGKDTT----IQTLLEFYMGKNTPNRQEFI 613

Query: 675 QER 677
              
Sbjct: 614 INN 616


>gi|301782147|ref|XP_002926491.1| PREDICTED: DNA topoisomerase 2-beta-like [Ailuropoda melanoleuca]
          Length = 1608

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 141/696 (20%), Positives = 261/696 (37%), Gaps = 69/696 (9%)

Query: 16  SQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE---- 71
            Q ++ K ++S     + +    S    Y          LE + +RP  YIG  +     
Sbjct: 13  DQNNAAKKEESETANKNDSSKKLSVERVYQKK-----TQLEHILLRPDTYIGSVEPLTQL 67

Query: 72  ------------------KALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN-GFLTVVD 111
                               L+ +F E++ NA D          I+VS+D     +++ +
Sbjct: 68  MWVYDEDVGMNCREVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWN 127

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171
           NG+GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V
Sbjct: 128 NGKGIPVVEH-KVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTV 186

Query: 172 TVARQNTIFSQK--FSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARL 227
             A +    S K  +   +  +   K +    +  T ITF+PD              A +
Sbjct: 187 ETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKDIVALM 246

Query: 228 LKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEI 287
            +     A     VK  ++  K                  G ++Y+   ++++   +   
Sbjct: 247 TRRAYDLAGSCKGVKVMFNGKKLPV--------------NGFRSYVDLYVKDKLDETGVA 292

Query: 288 FTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
                E         +  +   E+  +  S+ N+I T +GG H   +   +   + +   
Sbjct: 293 LKVIHEL---ANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIE-VV 348

Query: 348 LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
             +NK  +S+    +       ++  I  P F  QTK  +         +  L + F   
Sbjct: 349 KKKNKAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKCQLSEKFFK- 407

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
              N      +L WV  +++   +  K+    + + I+ +       D     +    L 
Sbjct: 408 AASNCGIVESILNWVKFKAQ--TQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLI 465

Query: 468 IVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           + EGDSA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +G + 
Sbjct: 466 LTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQY 525

Query: 525 RSQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           +  Y + +    LRY K++IMTD D DG+HI  LL+ F +     L++   L     P+ 
Sbjct: 526 KKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIV 585

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           + ++  + +  +      +  +      +   +I  +KGLG   A + KE   D  +  +
Sbjct: 586 KASKNKQELSFYSIPEFDEWKKHI--ENQKAWKIKYYKGLGTSTAKEAKEYFADMERHRI 643

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           L                + +K    K D+R +++  
Sbjct: 644 LF--RYAGPEDDAAITLAFSK---KKIDDRKEWLTN 674


>gi|119196923|ref|XP_001249065.1| hypothetical protein CIMG_02836 [Coccidioides immitis RS]
          Length = 1635

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 159/725 (21%), Positives = 281/725 (38%), Gaps = 72/725 (9%)

Query: 4   DSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQS------ASDNYDASSIRILEGLEP 57
           D   L S  PP+     + +  + +   +P    Q+      AS    +   + L  +E 
Sbjct: 3   DDDSLLSNTPPKPVKKGKAVGAAKKSTANPLSTVQNESVTNEASSGKSSDQYQKLSQVEH 62

Query: 58  VRMRPGMYIGGTD-----------------------EKALHHLFSEVIDNAMDEVIAGY- 93
           +  RP  YIG  +                          L+ +F E++ NA D       
Sbjct: 63  IIKRPDTYIGSIERTQQNMWVYNSTTDQMEYREVSYVPGLYKIFDEILVNAADNKQRDNN 122

Query: 94  ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
            + I+V+LD   G ++V +NGRGIPVE H K       E+I   L     +D+   +++G
Sbjct: 123 MSEIKVTLDMEAGEISVWNNGRGIPVEIHSK-EKIYIPELIFGHLLTSSNYDDEQAKVTG 181

Query: 153 GLHGVGISVVNALSDELHVTVA--RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           G +G G  + N  S E  V  A  R    + Q +   +      K  + +    T+ITF+
Sbjct: 182 GRNGYGAKLCNIFSTEFTVETADSRSKKKYRQTWQDNMSKMRKAKITESKGNDYTKITFK 241

Query: 211 PD-PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           PD  K   +    D   L+K        + RV    +  +     +        Y     
Sbjct: 242 PDFKKFGMEGMDADFEALVKRRVYDLAGTCRVTVRLNGSRIPISNFKK------YMEMYT 295

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGT 329
           K   + + E  +   SEI T  TE         E   A  + + +  S+ N+I T  GGT
Sbjct: 296 KAIKRERGEEAASDKSEIVTDSTE------PRWEIGFAVSDGSFQQVSFVNSIATTSGGT 349

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           H + +   +   +   A   +NK    +    +       ++  I  P F  QTK +L +
Sbjct: 350 HVNYISDQICSKLAD-AVKKKNKTGPLLKPAQIRNHIFLFVNCLIVNPAFTSQTKEQLTT 408

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
             +Q   +  L + F   +++  +        ++  +E++  +  ++    + A      
Sbjct: 409 KQSQFGSKCVLSEEFLKKILKTQVMQN-----IMHFAEQKADQILKKTDGSRRARMNNPK 463

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEK 506
                       H   L + EGDSA G A   R         V PLRGK+LNV  A  ++
Sbjct: 464 LTDANKAGTKEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQ 523

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           I  NQ+I ++   LG + + +Y +   LRY  ++IMTD D DG+HI  LL+ +       
Sbjct: 524 ISKNQEIQNIKNFLGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPS 583

Query: 566 LIEQ-KHLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
           L++    L     P+ ++ +G     T S         ++  +        + +   +KG
Sbjct: 584 LLKIPGFLIEFITPIVKVWKGDPKNPTASKSFFTLPEYEEWKKSHG--HDRRWDKKYYKG 641

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE--R 677
           LG       +    D ++       +    N  +    + +K    KAD+R +++++   
Sbjct: 642 LGTSSTEDAEVYFRDLDRHLKEFHAMQD--NEAQLIDLAFSK---KKADDRKEWLRQFKP 696

Query: 678 ASFID 682
            +++D
Sbjct: 697 GTYLD 701


>gi|70992793|ref|XP_751245.1| DNA topoisomerase II [Aspergillus fumigatus Af293]
 gi|66848878|gb|EAL89207.1| DNA topoisomerase II [Aspergillus fumigatus Af293]
 gi|159130301|gb|EDP55414.1| DNA topoisomerase II [Aspergillus fumigatus A1163]
          Length = 1660

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 158/727 (21%), Positives = 280/727 (38%), Gaps = 84/727 (11%)

Query: 9   FSTLPPQSQGSSEKLKKSGEIPDSP-------------AFANQSASDNYDASSIRILEGL 55
            S  PP+    +   KK G  P +                 + +AS+ Y     + L  L
Sbjct: 10  LSQTPPKKVKKAPASKKGGSNPLADVENESFGGDIGDQPATSTNASEKY-----QKLTQL 64

Query: 56  EPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDNAMDEVIAG 92
           E +  RP  YIG  +                          L+ +F E++ NA D     
Sbjct: 65  EHIIKRPDTYIGSVERTTQFMWVYDSETEGMKYKEVSYVPGLYKIFDEIVVNAADNKQND 124

Query: 93  -YANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
              + I V++D   G ++V +NGRGIP+E H K       E+I   L     +D++  ++
Sbjct: 125 ANMDEIRVTIDRESGEISVWNNGRGIPIEIHAK-EGIYVPELIFGHLLTSSNYDDTQKKV 183

Query: 151 SGGLHGVGISVVNALSDEL--HVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           +GG +G G  + N  S E       +RQ   + Q ++  +      K    + +  T++T
Sbjct: 184 TGGRNGFGAKLCNVFSTEFTIETQDSRQKKKYKQTWTNNMSKMGKAKITDAKGEDYTKVT 243

Query: 209 FRPDP-KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
           F+PD  K   +    D   L+K        + +V    +  +     +        Y   
Sbjct: 244 FKPDYAKFGMEGMDDDFEALVKRRVYDLAGTTKVAVKLNGSRIPVRNFKK------YMEM 297

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEG 327
             K   + + E  +    EI T             E   A  + +    S+ N+I T  G
Sbjct: 298 YTKAIRRERGEEDTNAKDEIITCS------PDPRWEIGFAVSDGSFHQVSFVNSIATTSG 351

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           GTH + +   +   +       +NK   ++    +       ++  I  P F  QTK +L
Sbjct: 352 GTHVNYIADQICARLAD-QVKKKNKNGATLKPAQIRNHIFIFVNALIVNPAFTSQTKEQL 410

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL 447
            +  +Q   +  L + F   ++      T+++  ++  ++ +  +  ++    +      
Sbjct: 411 TTKSSQFGSKCVLEEDFYKKIL-----RTEVMNNILHFAQAKADQLLKKTDGGRRTRMNN 465

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGS 504
                         H   L + EGDSA G A   R         V PLRGK+LNV  A  
Sbjct: 466 PKLVDANKAGTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASF 525

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           E+I  NQ+I ++   LG + + +Y +   LRY  ++IMTD D DG+HI  LL+ F   + 
Sbjct: 526 EQISKNQEIQNIKNFLGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINFLQAQF 585

Query: 564 YDLIEQK-HLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
             L++    L     P+ ++ +G     TK          +   EE K   +   E   +
Sbjct: 586 PSLLKIPEFLIEFITPIAKVWKGDPKNPTKQHSFFTMPEYEAWKEEHK--HERGWEHKYY 643

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE- 676
           KGLG       +    D ++       +    +  +  + + +K    KADER +++++ 
Sbjct: 644 KGLGTSTTEDAQVYFRDLDRHLKEFHTLQD--HETELIELAFSK---KKADERKEWLRQF 698

Query: 677 -RASFID 682
              +F+D
Sbjct: 699 KPGTFLD 705


>gi|149584135|ref|XP_001519680.1| PREDICTED: similar to DNA topoisomerase II [Ornithorhynchus
           anatinus]
          Length = 1746

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 138/694 (19%), Positives = 265/694 (38%), Gaps = 69/694 (9%)

Query: 17  QGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD------ 70
           Q  S   +      D  A    S    Y          LE + +RP  YIG  +      
Sbjct: 35  QPVSMNTQLGKIKKDEAAKKRLSVERIYQKK-----TQLEHILLRPDTYIGSVELLTQQM 89

Query: 71  ----------------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDN 112
                              L+ +F E++ NA D        + I+V++D  N  ++V +N
Sbjct: 90  WVFDEDAGLNCRDVTFVPGLYKIFDEILVNAADNKQRDNKMSCIKVTIDPENNTISVWNN 149

Query: 113 GRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVT 172
           G+GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V 
Sbjct: 150 GKGIPVVEH-KVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 208

Query: 173 V--ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLL 228
                   +F Q ++  +  +   K +    +  T ITF+PD              A + 
Sbjct: 209 TASREYRKLFKQTWTDNMGKAGEMKLKPFDGEDYTCITFQPDLAKFKMTSLDKDIVALMS 268

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           +     A  +  VK   +  +   +              G + Y+   ++++   +    
Sbjct: 269 RRAYDIAGSTKDVKVFLNGKRLPVK--------------GFRGYVDLYVKDKVDETGNPL 314

Query: 289 TGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
               E+        E  +   E+  +  S+ N+I T +GG H   +   +   + +    
Sbjct: 315 KVIHEE---VNSRWEVCLTMSEKGFQQVSFVNSIATSKGGRHVDYVADQIISKLIE-VVK 370

Query: 349 TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
            +NK  +++    +       ++  I  P F  QTK  +         +  L + F    
Sbjct: 371 KKNKGGVAVKPHQVKNHMWIFVNSLIENPTFDSQTKENMTLQAKSFGSKCQLSEKFIK-A 429

Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFI 468
             +      +L WV  +++  ++  K+    +   I+ +       D     +    L +
Sbjct: 430 AASCGVVESILNWVKFKAQ--IQLNKKCSAVKHNRIKGIPKLDDANDAGSKNSTDCTLIL 487

Query: 469 VEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
            EGDSA   A        R    V PLRGK+LNV  A  ++I  N +I ++++ +G + +
Sbjct: 488 TEGDSAKTLAVSGLGVVGRDKYGVFPLRGKMLNVREASHKQIMENAEINNIIKIVGLQYK 547

Query: 526 SQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581
             Y ++D    LRY K++IMTD D DG+HI  LL+ F +     L+  + L     P+ +
Sbjct: 548 KNYDDQDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVK 607

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           +++  + +  +     ++       H   K ++  +KGLG   + + KE   D  +   +
Sbjct: 608 VSRNKQEMSFYSLPEFEEWKNSTGDH--KKWKVKYYKGLGTSTSKEAKEYFSDMTRHR-I 664

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675
           + + +           + +K    + D+R +++ 
Sbjct: 665 QFKYS-GPEDDAAISLAFSK---KQIDDRKEWLT 694


>gi|150390857|ref|YP_001320906.1| DNA gyrase subunit B [Alkaliphilus metalliredigens QYMF]
 gi|149950719|gb|ABR49247.1| DNA gyrase, subunit B domain protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 680

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 183/694 (26%), Positives = 309/694 (44%), Gaps = 62/694 (8%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
                  Y   SI  L  +E VR+RP +  G        H   E + N++DE   G+  L
Sbjct: 2   TDKKKQEYGNESISSLTEIEKVRLRPQVIFGSDGITGSRHTVDETVANSVDEAKEGFGKL 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD---NSTYEISGG 153
           I+V    +  ++V D  RGIPVE + K  NK   E++  TL+AGGK++     +YE S G
Sbjct: 62  IKVKRFKDRSISVQDFARGIPVEFNSK-ENKYNWELVFCTLYAGGKYNTNSGESYEYSKG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           L+G+G +     S+ + V V R    ++ +F +G  +  L+KK+      GT IT++PD 
Sbjct: 121 LNGLGTTATQFASEYMDVLVRRDGYEYTLRFEKGENIGGLQKKKCDYESTGTTITWKPDL 180

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            +F D          ++ + +A ++  +      +          E   +Y+  G+  Y+
Sbjct: 181 DVFTDIN-IPLEFYQELLKRQAIVNKGITFELYDE-------ASEENFTYYYEKGIVDYI 232

Query: 274 QTKLENRSLISSEIFTGKTE-----KKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGG 328
           +     + L S +    +T+      K  ++   E A A+      I  Y N+   + GG
Sbjct: 233 EEINGGKELSSVQYIELETKGRDRADKPEYKVKAEVAFAFNNHASHIEYYHNSSYLEYGG 292

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
             +  ++ A    I++Y +      K     I  D+  S V I + +     F  QTK  
Sbjct: 293 APDKAVKSAFLSAIEQYLKNNNLYKKDEKRAIFADIEDSLVLISNSYSTLTSFENQTKRA 352

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           + ++  Q  + + L++    Y ++N +EA K+   +I     R    K R   +K     
Sbjct: 353 ISNVFIQSALTDFLKEKLQIYFIENKVEADKIANQIIINKRSRESAEKTRINVKKKLESP 412

Query: 447 LRLPGKLA---DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
                K+A   DC        EL+IVEGDSA GS KQ R+   QA++P+RGKILN   A 
Sbjct: 413 SNFANKVAKFVDCKTKDKSKRELYIVEGDSAMGSTKQGRDSEFQAIMPVRGKILNCLKAK 472

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREE---------DLRYEKVIIMTDADVDGAHIASL 554
            + I N+  I+DL++ L C    + +            L ++KVII TDADVDG  I +L
Sbjct: 473 LDNIFNDSVIVDLLKVLSCGIEIKSKNNTDLYTFELDKLNWDKVIICTDADVDGYQIRTL 532

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRI--------------------TQGTK--SVYAH 592
           +L   Y+ +  L+ +  +++   PLF I                     +G K  S++ +
Sbjct: 533 ILAMLYRLVPTLLREGKVYIAETPLFEIISTTLPKLTDKQKDGITFVENKGDKNYSIFVY 592

Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652
            ++ +  ++ +     KGK  I R KGLGE     + +T M+   R L++V ++      
Sbjct: 593 SDQQRDFVVSKL----KGKYAIQRSKGLGENEPEMMWQTTMNPQTRKLIQVTMSD----A 644

Query: 653 KDTQDSINKLMGTKADERFKFIQERA-SFIDDVG 685
           +   D  + L+G   + R   I E    +++ + 
Sbjct: 645 QKADDVFDLLLGNNLEGRKVHIAENGHKYLEQID 678


>gi|3024753|sp|Q64399|TOP2B_CRILO RecName: Full=DNA topoisomerase 2-beta; AltName: Full=DNA
           topoisomerase II, beta isozyme
 gi|2137065|pir||S59969 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) isoform beta -
           Chinese hamster
 gi|790988|emb|CAA60173.1| DNA topoisomerase (ATP-hydrolysing) [Cricetulus longicaudatus]
          Length = 1612

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 139/693 (20%), Positives = 259/693 (37%), Gaps = 69/693 (9%)

Query: 19  SSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE------- 71
           ++ K ++      + +    S    Y          LE + +RP  YIG  +        
Sbjct: 18  NAAKKEELETSNKNDSSKKLSVERVYQKK-----TQLEHILLRPDTYIGSVEPLTQLMWV 72

Query: 72  ---------------KALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN-GFLTVVDNGR 114
                            L+ +F E++ NA D          I+VS+D     +++ +NG+
Sbjct: 73  YDEDVGMNCREVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGK 132

Query: 115 GIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA 174
           GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V  A
Sbjct: 133 GIPVVEH-KVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETA 191

Query: 175 RQNTIFSQK--FSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKM 230
            +    S K  +   +  +   K +    +  T ITF+PD              A + + 
Sbjct: 192 CKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLAKFKMEKLDKDIVALMTRR 251

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
               A     VK  ++  K                  G ++Y+   ++++   +      
Sbjct: 252 AYDLAGSCKGVKVMFNGKKLPV--------------NGFRSYVDLYVKDKLDETGVALKV 297

Query: 291 KTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
             E         +  +   E+  +  S+ N+I T +GG H   +   +   + +     +
Sbjct: 298 IHEL---ANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIE-VVKKK 353

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
           NK  +S+    +       ++  I  P F  QTK  +         +  L + F      
Sbjct: 354 NKAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKCQLSEKFFK-AAS 412

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           N      +L WV  +++   +  K+    + + I+ +       D     +    L + E
Sbjct: 413 NCGIVESILNWVKFKAQ--TQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLILTE 470

Query: 471 GDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           GDSA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +G + +  
Sbjct: 471 GDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKS 530

Query: 528 YREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT 583
           Y + +    LRY K++IMTD D DG+HI  LL+ F +     L++   L     P+ + +
Sbjct: 531 YDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKAS 590

Query: 584 QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRV 643
           +  + +  +      +  +      +   +I  +KGLG   A + KE   D  +  +L  
Sbjct: 591 KNKQELSFYSIPEFDEWKKHI--ENQKAWKIKYYKGLGTSTAKEAKEYFADMERHRILF- 647

Query: 644 EINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
                         + +K    K D+R +++  
Sbjct: 648 -RYAGPEDDAAITLAFSK---KKIDDRKEWLTN 676


>gi|18369812|dbj|BAB84101.1| DNA topoisomerase II [Aspergillus fumigatus]
          Length = 1495

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 156/727 (21%), Positives = 277/727 (38%), Gaps = 84/727 (11%)

Query: 9   FSTLPPQSQGSSEKLKKSGEIPDSP-------------AFANQSASDNYDASSIRILEGL 55
            S  PP+    +   KK G  P +                 + +AS+ Y     + L  L
Sbjct: 10  LSQTPPKRVKKAPASKKGGSNPLADVENESFGGDIGDQPATSTNASEKY-----QKLTQL 64

Query: 56  EPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDNAMDEVIAG 92
           E +  RP  YIG  +                          L+ +F E++ NA D     
Sbjct: 65  EHIIKRPDTYIGSVERTTQFMWVYDSETEGMKYKEVSYVPGLYKIFDEIVVNAADNKQND 124

Query: 93  -YANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
              + I V++D   G ++V +NGRGIP+E H K       E+I   L     +D++  ++
Sbjct: 125 ANMDEIRVTIDRESGEISVWNNGRGIPIEIHAK-EGIYVPELIFGHLLTSSNYDDTQKKV 183

Query: 151 SGGLHGVGISVVNALSDEL--HVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           +GG +G G  + N  S E       +RQ   + Q ++  +      K    + +  T++T
Sbjct: 184 TGGRNGFGAKLCNVFSTEFTIETQDSRQKKKYKQTWTNNMSKMGKAKITDAKGEDYTKVT 243

Query: 209 FRPDP-KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            +PD  K   +    D   L+K        + +V    +  +     +        Y   
Sbjct: 244 CKPDYAKFGMEGMDDDFEALVKRRVYDLAGTTKVAVKLNGSRIPVRNFKK------YMEM 297

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEG 327
             K   + + E  +    EI T             E   A  + +    S+ N+I T  G
Sbjct: 298 YTKAIRRERGEEDTNAKDEIITCS------PDPRWEIGFAVSDGSFHQVSFVNSIATTSG 351

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           GTH + +   +   +       +NK   ++    +       ++  I  P F  QTK +L
Sbjct: 352 GTHVNYIADQICARLAD-QVKKKNKNGATLKPAQIRNHIFIFVNALIVNPAFTSQTKEQL 410

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL 447
            +  +Q   +  L + F   ++      T+++  ++  ++ +  +  ++    +      
Sbjct: 411 TTKSSQFGSKCVLEEDFYKKIL-----RTEVMNNILHFAQAKADQLLKKTDGGRRTRMNN 465

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGS 504
                         H   L + EGDSA G A   R         V PLRGK+LNV  A  
Sbjct: 466 PKLVDANKAGTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASF 525

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           E+I  NQ+I ++   LG + + +Y     LRY  ++IMTD D DG+HI  LL+ F   + 
Sbjct: 526 EQISKNQEIQNIKNFLGLQHKKEYTHTRGLRYGHLMIMTDQDHDGSHIKGLLINFLQAQF 585

Query: 564 YDLIEQK-HLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
             L++    L     P+ ++ +G     TK          +   E+ K       E   +
Sbjct: 586 PSLLKIPEFLIEFITPIAKVWKGDPKNPTKQHSFFTMPEYEAWKEDHK--HDRGWEHKYY 643

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE- 676
           KGLG       +    D ++       +    +  +  + + +K    KADER +++++ 
Sbjct: 644 KGLGTSTTEDAQVYFRDLDRHLKEFHTLQD--HETELIELAFSK---KKADERKEWLRQF 698

Query: 677 -RASFID 682
              +F+D
Sbjct: 699 KPGTFLD 705


>gi|34328148|ref|NP_033435.2| DNA topoisomerase 2-beta [Mus musculus]
 gi|76363529|sp|Q64511|TOP2B_MOUSE RecName: Full=DNA topoisomerase 2-beta; AltName: Full=DNA
           topoisomerase II, beta isozyme
 gi|32451610|gb|AAH54541.1| Topoisomerase (DNA) II beta [Mus musculus]
 gi|54887373|gb|AAH41106.1| Topoisomerase (DNA) II beta [Mus musculus]
 gi|148688695|gb|EDL20642.1| topoisomerase (DNA) II beta [Mus musculus]
          Length = 1612

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 139/693 (20%), Positives = 259/693 (37%), Gaps = 69/693 (9%)

Query: 19  SSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE------- 71
           ++ K ++      + +    S    Y          LE + +RP  YIG  +        
Sbjct: 18  NATKKEELETANKNDSTKKLSVERVYQKK-----TQLEHILLRPDTYIGSVEPLTQLMWV 72

Query: 72  ---------------KALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN-GFLTVVDNGR 114
                            L+ +F E++ NA D          I+VS+D     +++ +NG+
Sbjct: 73  YDEDVGMNCREVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGK 132

Query: 115 GIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA 174
           GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V  A
Sbjct: 133 GIPVVEH-KVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETA 191

Query: 175 RQNTIFSQK--FSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKM 230
            +    S K  +   +  +   K +    +  T ITF+PD              A + + 
Sbjct: 192 CKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKDIVALMTRR 251

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
               A     VK  ++  K                  G ++Y+   ++++   +      
Sbjct: 252 AYDLAGSCKGVKVMFNGKKLPV--------------NGFRSYVDLYVKDKLDETGVALKV 297

Query: 291 KTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
             E         +  +   E+  +  S+ N+I T +GG H   +   +   + +     +
Sbjct: 298 IHEL---ANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVSKLIE-VVKKK 353

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
           NK  +S+    +       ++  I  P F  QTK  +         +  L + F      
Sbjct: 354 NKAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKCQLSEKFFK-AAS 412

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           N      +L WV  +++   +  K+    + + I+ +       D     +    L + E
Sbjct: 413 NCGIVESILNWVKFKAQ--TQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLILTE 470

Query: 471 GDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           GDSA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +G + +  
Sbjct: 471 GDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKS 530

Query: 528 YREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT 583
           Y + +    LRY K++IMTD D DG+HI  LL+ F +     L++   L     P+ + +
Sbjct: 531 YDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKAS 590

Query: 584 QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRV 643
           +  + +  +      +  +      +   +I  +KGLG   A + KE   D  +  +L  
Sbjct: 591 KNKQELSFYSIPEFDEWKKHI--ENQKAWKIKYYKGLGTSTAKEAKEYFADMERHRILF- 647

Query: 644 EINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
                         + +K    K D+R +++  
Sbjct: 648 -RYAGPEDDAAITLAFSK---KKIDDRKEWLTN 676


>gi|328550504|ref|NP_001127186.1| DNA topoisomerase 2-beta [Pongo abelii]
 gi|55725810|emb|CAH89685.1| hypothetical protein [Pongo abelii]
          Length = 1620

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 140/693 (20%), Positives = 260/693 (37%), Gaps = 69/693 (9%)

Query: 19  SSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE------- 71
           ++ K ++S     + +    S    Y          LE + +RP  YIG  +        
Sbjct: 25  NAAKKEESETANKNDSSKKLSVERVYQKK-----TQLEHILLRPDTYIGSVEPLTQFMWV 79

Query: 72  ---------------KALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN-GFLTVVDNGR 114
                            L+ +F E++ NA D          I+VS+D     +++ +NG+
Sbjct: 80  YDEDVGMNCREVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGK 139

Query: 115 GIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA 174
           GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V  A
Sbjct: 140 GIPVVEH-KVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETA 198

Query: 175 RQNTIFSQK--FSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKM 230
            +    S K  +   +  +   K +    +  T ITF+PD              A + + 
Sbjct: 199 CKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKDIVALMTRR 258

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
               A     VK  ++  K                  G ++Y+   ++++   +      
Sbjct: 259 AYDLAGSCRGVKVMFNGKKLPV--------------NGFRSYVDLYVKDKLDETGVALKV 304

Query: 291 KTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
             E         +  +   E+  +  S+ N+I T +GG H   +   +   + +     +
Sbjct: 305 IHEL---ANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIE-VVKKK 360

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
           NK  +S+    +       ++  I  P F  QTK  +         +  L + F      
Sbjct: 361 NKAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKCQLSEKFFK-AAS 419

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           N      +L WV  +++   +  K+    + + I+ +       D     +    L + E
Sbjct: 420 NCGIVESILNWVKFKAQ--TQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLILTE 477

Query: 471 GDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           GDSA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +G + +  
Sbjct: 478 GDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGQQYKKS 537

Query: 528 YREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT 583
           Y + +    LRY K++IMTD D DG+HI  LL+ F +     L++   L     P+ + +
Sbjct: 538 YDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKAS 597

Query: 584 QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRV 643
           +  + +  +      +  +      +   +I  +KGLG   A + KE   D  +  +L  
Sbjct: 598 KNKQELSFYSIPEFDEWKKHI--ENQKAWKIKYYKGLGTSTAKEAKEYFADMERHRILF- 654

Query: 644 EINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
                         + +K    K D+R +++  
Sbjct: 655 -RYAGPEDDAAITLAFSK---KKIDDRKEWLTN 683


>gi|1066004|dbj|BAA07236.1| typr II DNA topoisomerase beta isoform [Mus musculus]
          Length = 1612

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 139/693 (20%), Positives = 259/693 (37%), Gaps = 69/693 (9%)

Query: 19  SSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE------- 71
           ++ K ++      + +    S    Y          LE + +RP  YIG  +        
Sbjct: 18  NATKKEELETANKNDSTKKLSVERVYQKK-----TQLEHILLRPDTYIGSVEPLTQLMWV 72

Query: 72  ---------------KALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN-GFLTVVDNGR 114
                            L+ +F E++ NA D          I+VS+D     +++ +NG+
Sbjct: 73  YDEDVGMNCREVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGK 132

Query: 115 GIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA 174
           GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V  A
Sbjct: 133 GIPVVEH-KVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETA 191

Query: 175 RQNTIFSQK--FSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKM 230
            +    S K  +   +  +   K +    +  T ITF+PD              A + + 
Sbjct: 192 CKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKDIVALMTRR 251

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
               A     VK  ++  K                  G ++Y+   ++++   +      
Sbjct: 252 AYDLAGSCKGVKVMFNGKKLPV--------------NGFRSYVDLYVKDKLDETGVALKV 297

Query: 291 KTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
             E         +  +   E+  +  S+ N+I T +GG H   +   +   + +     +
Sbjct: 298 IHEL---ANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVSKLIE-VVKKK 353

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
           NK  +S+    +       ++  I  P F  QTK  +         +  L + F      
Sbjct: 354 NKAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKCQLSEKFFK-AAS 412

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           N      +L WV  +++   +  K+    + + I+ +       D     +    L + E
Sbjct: 413 NCGIVESILNWVKFKAQ--TQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLILTE 470

Query: 471 GDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           GDSA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +G + +  
Sbjct: 471 GDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKS 530

Query: 528 YREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT 583
           Y + +    LRY K++IMTD D DG+HI  LL+ F +     L++   L     P+ + +
Sbjct: 531 YDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKAS 590

Query: 584 QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRV 643
           +  + +  +      +  +      +   +I  +KGLG   A + KE   D  +  +L  
Sbjct: 591 KNKQELSFYSIPEFDEWKKHI--ENQKAWKIKYYKGLGTSTAKEAKEYFADMERHRILF- 647

Query: 644 EINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
                         + +K    K D+R +++  
Sbjct: 648 -RYAGPEDDAAITLAFSK---KKIDDRKEWLTN 676


>gi|224086458|ref|XP_002193920.1| PREDICTED: topoisomerase (DNA) II alpha 170kDa [Taeniopygia guttata]
          Length = 2085

 Score =  403 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 139/698 (19%), Positives = 261/698 (37%), Gaps = 69/698 (9%)

Query: 14   PQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD--- 70
             Q       +K++  +  +      +    Y          LE + +RP  YIG  +   
Sbjct: 568  SQPSSPLRPVKENVLVGKADGPKKLTVEHIYQKK-----TQLEHILLRPDTYIGSVELVT 622

Query: 71   -------------------EKALHHLFSEVIDNAMDEVIAG-YANLIEVSLD-GNGFLTV 109
                                  L+ +F E++ NA D        + I+V++D  N  ++V
Sbjct: 623  QQMWVFDEGVGLNCRDVTFVPGLYKIFDEILVNAADNKQRDKNMSCIKVTIDVENNTISV 682

Query: 110  VDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDEL 169
             +NG+GIPV  H K        +I   L     +D++  +++GG +G G  + N  S + 
Sbjct: 683  WNNGKGIPVVEH-KVEKVYVPAMIFGQLLTSSNYDDNEKKVTGGRNGYGAKLCNIFSTKF 741

Query: 170  HVT--VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAA 225
             V         +F Q ++  +  +   K +       T +TF+PD   F          A
Sbjct: 742  TVETGCREYKKLFKQTWTDNMGKAGEMKLKYFDGDDYTCVTFQPDLSKFKMTVLDKDIVA 801

Query: 226  RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
             + +     A  +  VK   +  +   +              G ++Y+   L+++   + 
Sbjct: 802  LMSRRAYDIAGSTKDVKVFLNGQRLPVK--------------GFRSYVDLYLKDKVDETG 847

Query: 286  EIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKY 345
                   E+        E  +   E+  +  S+ N+I T +GG H   +   L   +   
Sbjct: 848  NALKVIHEE---VNSRWEVCLTLSEKGFQQVSFVNSIATTKGGRHVDYVADQLVTKLID- 903

Query: 346  AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                +NK  + +    +       ++  I  P F  QTK  +            L + F 
Sbjct: 904  VVKKKNKNGVGVKPFQVKNHMWIFVNALIENPTFDSQTKENMTLQSKNFGSTCKLSEKFI 963

Query: 406  HYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTE 465
               V        +L WV  +++   +  K+    + + I+ +       D     +    
Sbjct: 964  KGAVG-CGIVESILNWVKFKAQ--NQLNKKCSAVKHSKIKGVPKLDDANDAGSKNSLDCT 1020

Query: 466  LFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
            L + EGDSA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +G 
Sbjct: 1021 LILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGL 1080

Query: 523  RTRSQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
            + +  Y +++    LRY K++IMTD D DG+HI  LL+ F +     L+    L     P
Sbjct: 1081 QYKKNYEDQESLKSLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHNFLEEFITP 1140

Query: 579  LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
            + + ++  + +  +     ++     + +     +I  +KGLG   + + KE   D  K 
Sbjct: 1141 IIKASKNKEEIAFYSIPEFEEWKASTQNYN--SWKIKYYKGLGTSTSKEAKEYFADMAKH 1198

Query: 639  TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
             +                 + +K    K +ER +++  
Sbjct: 1199 RIGF--KYSGPEDDAAITLAFSK---KKIEERKEWLTN 1231


>gi|115390190|ref|XP_001212600.1| DNA topoisomerase 2 [Aspergillus terreus NIH2624]
 gi|114194996|gb|EAU36696.1| DNA topoisomerase 2 [Aspergillus terreus NIH2624]
          Length = 1732

 Score =  403 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 158/741 (21%), Positives = 287/741 (38%), Gaps = 85/741 (11%)

Query: 1   MTDDS---------IDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQ-----SASDNYD- 45
           M+D             + S  PP+ Q  +   KK G  P +             S+N D 
Sbjct: 67  MSDADPFDMGDDDDNSVLSHTPPKKQKKAPATKKGGSKPLADVENESFMDGIEESNNQDK 126

Query: 46  ----ASSIRILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLF 78
               +   + L  LE +  RP  Y+G T+                          L+ +F
Sbjct: 127 DTNVSEKYQKLTQLEHIIKRPDTYVGSTERTTQHMWVYSSESEGMEYREVSYVPGLYKIF 186

Query: 79  SEVIDNAMDEVIAG-YANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTT 136
            E++ NA D        + I V++D   G ++V +NGRGIP+E H K       E+I   
Sbjct: 187 DEIVVNAADNKQNDKNMDEIRVTIDRESGEISVWNNGRGIPIEMHSK-EKMYVPELIFGH 245

Query: 137 LHAGGKFDNSTYEISGGLHGVGISVVNALSDEL--HVTVARQNTIFSQKFSRGIPLSPLE 194
           L     +D++  +++GG +G G  + N  S E       +RQ   + Q ++  +      
Sbjct: 246 LLTSSNYDDTQMKVTGGRNGFGAKLCNVFSTEFTIETQDSRQKKKYKQTWTENMTKMGKA 305

Query: 195 KKEKVRNKRGTRITFRPDP-KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           K    +    T++TF+PD  K        D   L+K        + +V    +  +    
Sbjct: 306 KITDAKGADYTKVTFKPDYAKFGMTGMDDDFEALVKRRVYDLAGTAKVAVKLNGSRIPI- 364

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP 313
                   + Y     K   + + +      +EI T             E   A  +   
Sbjct: 365 -----RNFKMYMEMYTKAIRRERGDMGPAGKNEIITCS------PDPRWEVGFAVSDGAF 413

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVF 373
           +  S+ N+I T  GGTH + +   +   + +     +NK   ++    +       ++  
Sbjct: 414 QQVSFVNSIATTSGGTHVNYIADQICGKLAE-QVKKKNKNGATLKPAQIRNHIFIFVNAL 472

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           I  P F  QTK +L +  +Q   +  L + F   +++     T+++  ++  ++++  + 
Sbjct: 473 IVNPAFTSQTKEQLTTKQSQFGSKCVLEEDFYKKILK-----TEVMTNILHFAQQKADQM 527

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVL 490
            ++    + +                  H   L + EGDSA G A   R         V 
Sbjct: 528 LKKTDGGRRSRMNNPKLTDANKAGTKEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVF 587

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGA 549
           PLRGK+LNV  A  ++I  NQ+I ++   +G + + +Y +   LRY  ++IMTD D DG+
Sbjct: 588 PLRGKLLNVRDASFDQIAKNQEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGS 647

Query: 550 HIASLLLTFFYQEMYDLIEQK-HLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEE 603
           HI  LL+ F   +   L++    L     P+ ++ +G     TK          +   EE
Sbjct: 648 HIKGLLINFLQAQFPSLLKIPEFLIEFITPIVKVWKGDPKNPTKQRSFFTMPEYEAWKEE 707

Query: 604 FKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLM 663
                +   E   +KGLG       +    D ++       +    N ++  + + +K  
Sbjct: 708 HG--HERGWEHKYYKGLGTSTTEDAQIYFRDLDRHLKEFHTMQD--NEVELIELAFSK-- 761

Query: 664 GTKADERFKFIQE--RASFID 682
             KADER +++++    +F+D
Sbjct: 762 -KKADERKEWLRQFRPGTFLD 781


>gi|291045133|ref|NP_001094328.1| topoisomerase II beta [Rattus norvegicus]
 gi|109945583|dbj|BAE96971.1| DNA topoisomerase IIbeta [Rattus norvegicus]
          Length = 1614

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 138/693 (19%), Positives = 258/693 (37%), Gaps = 69/693 (9%)

Query: 19  SSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE------- 71
           ++ K ++      + +    S    Y          LE + +RP  YIG  +        
Sbjct: 18  NAAKKEELETANKNDSSKKLSVERVYQKK-----TQLEHILLRPDTYIGSVEPLTQLMWV 72

Query: 72  ---------------KALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN-GFLTVVDNGR 114
                            L+ +F E++ NA D          I+VS+D     +++ +NG+
Sbjct: 73  YDEDVGMNCREVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGK 132

Query: 115 GIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA 174
           GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V  A
Sbjct: 133 GIPVVEH-KVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETA 191

Query: 175 RQNTIFSQK--FSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKM 230
            +    S K  +   +  +   K +    +  T ITF+PD              A + + 
Sbjct: 192 CKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLAKFKMEKLDKDIVALMTRR 251

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
               A     VK  ++  K                  G ++Y+   ++++   +      
Sbjct: 252 AYDLAGSCKGVKVMFNGKKLPV--------------NGFRSYVDLYVKDKLDETGVALKV 297

Query: 291 KTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
             E         +  +   E+  +  S+ N+I T +GG H   +   +   + +     +
Sbjct: 298 IHEL---ANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIE-VVKKK 353

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
           NK  +S+    +       ++  I  P F  QTK  +         +  L + F      
Sbjct: 354 NKAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKCQLSEKFFK-AAS 412

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           N      +L WV  +++   +  K+    + + I+ +       D     +    L + E
Sbjct: 413 NCGIVESILNWVKFKAQ--TQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLILTE 470

Query: 471 GDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           GDSA   A        R    V PLRGKILN   A  ++I  N +I ++++ +G + +  
Sbjct: 471 GDSAKSLAVSGLGVIGRDRYGVFPLRGKILNAREASHKQIMENAEINNIIKIVGLQYKKS 530

Query: 528 YREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT 583
           Y + +    LRY K++IMTD D DG+HI  LL+ F +     L++   L     P+ + +
Sbjct: 531 YDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKAS 590

Query: 584 QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRV 643
           +  + +  +      +  +      +   +I  +KGLG   A + KE   D  +  +L  
Sbjct: 591 KNKQELSFYSIPEFDEWEKHI--ENQKAWKIKYYKGLGTSTAKEAKEYFADMERHRILF- 647

Query: 644 EINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
                         + +K    K D+R +++  
Sbjct: 648 -RYAGPEDDAAITLAFSK---KKIDDRKEWLTN 676


>gi|320537889|ref|ZP_08037803.1| DNA topoisomerase IV subunit B [Treponema phagedenis F0421]
 gi|320145263|gb|EFW36965.1| DNA topoisomerase IV subunit B [Treponema phagedenis F0421]
          Length = 604

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 189/659 (28%), Positives = 292/659 (44%), Gaps = 67/659 (10%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGY 93
           +A + YD S I+ L  LE +R+R GMYIG        +  ++ L  EVIDN++DE I G 
Sbjct: 2   AAKNTYDESKIKTLSSLEHIRLRTGMYIGRLGNGSNPDDGIYILLKEVIDNSIDEFIMGN 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
            N I+V LDG   + V D GRGIP+           +E + + ++ G K+++  ++ S G
Sbjct: 62  GNRIDVQLDG-NKVIVRDYGRGIPLGK--------VVECV-SVINTGAKYNDEVFQFSVG 111

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           L+GVG   VNALS    V   R        F +G   S  +   K   K GT + F PD 
Sbjct: 112 LNGVGTKAVNALSTHFRVVSIRDGKFSEAVFEQGSLKSQKQGATKPGIKNGTLVEFVPDE 171

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IFG    F+   + K   + AYL+  +   ++               +F    GL   L
Sbjct: 172 QIFGQY-EFNRDFIEKRMWNYAYLNSGLLLTFNG-------------AQFKSENGLLDLL 217

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
              +   +L     F             +E+A +          S+ N   T +GGTH S
Sbjct: 218 NANVSGSTLYDVGYF---------KESRLEFAFSHTNNYGETYFSFVNGQYTSDGGTHLS 268

Query: 333 GLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
             +  L +GI +Y             S+D+       ++V I+ P F  QTK KL + + 
Sbjct: 269 AFKEGLLKGINEYFRKNYK-------SEDVREGTCAAVAVKIQAPIFESQTKNKLGNTEV 321

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
           +  + N  +     +L +N   A K+ E ++     R      ++  R  A +      K
Sbjct: 322 RTWIVNDTKAAVVEWLQKNAEAARKMEEKIVANERLRTELNAVKKEARAAAKKIAIKIPK 381

Query: 453 LADCSQN-----IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
           L DC  +         T +FI EGDSA GS   +R+   QA+  LRGK  N+       I
Sbjct: 382 LKDCKFHLGDKLYGDETMIFITEGDSASGSMVSSRDVMVQAIFSLRGKPENMQGKKRAAI 441

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N ++ +++ ALG         E LRY K+II TDAD DG HI +LLLTFF     +LI
Sbjct: 442 YKNAELYNMMMALGIEND----IEGLRYSKIIIATDADNDGFHIRNLLLTFFLTYFEELI 497

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
               +F++  PLFR+    +++Y + E+ +    ++         EI+RFKGLGE+  S+
Sbjct: 498 TSGRIFILETPLFRVRSKKETIYCYSEKERDIAFKQLGA----GAEITRFKGLGEISPSE 553

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
             +         LL V +     +LK     +   MG    +R +FI +    + ++  
Sbjct: 554 FGQFIG--KDIKLLPVTV----QTLKKVPQILEFYMGKNTPQRKEFIMKN--LLAEIDA 604


>gi|298208510|ref|YP_003716689.1| DNA topoisomerase IV subunit B [Croceibacter atlanticus HTCC2559]
 gi|83848433|gb|EAP86302.1| DNA topoisomerase IV subunit B [Croceibacter atlanticus HTCC2559]
          Length = 618

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 191/666 (28%), Positives = 322/666 (48%), Gaps = 73/666 (10%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGY 93
                Y   +IR L+  E +RMRPGMYIG      + +  ++ L  EV+DN++DE +   
Sbjct: 2   EQETKYTEDNIRSLDWKEHIRMRPGMYIGKLGDGSSADDGIYILLKEVLDNSIDEFVMNA 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
              IE+S+ G   + V D GRGIP+           ++ +++ ++ GGK+D+  ++ S G
Sbjct: 62  GKTIEISIQGE-RVIVRDYGRGIPLGK---------VKDVVSKMNTGGKYDSKAFKKSVG 111

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           L+GVG   VNALS    V  +R     S +F++G  L+  E  ++   +RGT++TF PD 
Sbjct: 112 LNGVGTKAVNALSSYFRVESSRDGKSASAEFAQGN-LTDEEFLDETSRRRGTKVTFIPDE 170

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF +   + +  + KM ++  YL+  +   ++ ++             FY   GLK  L
Sbjct: 171 AIFKNY-KYRSEYVAKMLKNYVYLNPGLTIVFNGER-------------FYSENGLKDLL 216

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESG 333
              +     +   I              V    +  + + E  S+ N   T +GGTH+S 
Sbjct: 217 SDTIREDDRLYPIIHLKG------DDIEVAITHSKTQYSEEYHSFVNGQHTTQGGTHQSA 270

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA- 392
            R A+ + ++++          +  S D+  S V  +++ + +P F  QTKTKL S D  
Sbjct: 271 FREAIVKTVREFYG-------KNYESSDIRKSVVSAIAIKVMDPVFESQTKTKLGSTDMG 323

Query: 393 ------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
                 +  + + L+   D+YL ++   A +L + +++   ER      R++ R  A + 
Sbjct: 324 GDFPTVRTYINDFLKTKLDNYLHRHQDVADQLQKKILQAERERKDLSGIRKLARDRAKKA 383

Query: 447 LRLPGKLADCSQNIAHGT-------ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
                KL DC  ++            LFI EGDSA GS  ++R+ + QAV  L+GK LN 
Sbjct: 384 SLHNKKLRDCRIHLGDHKKDRYLETTLFITEGDSASGSITKSRDVNTQAVFSLKGKPLNS 443

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
                + +  N++   L  AL          EDLRY  ++I TDADVDG HI  LL+TFF
Sbjct: 444 YGLSKKIVYENEEFNLLQAALNIEDS----IEDLRYNNIVIATDADVDGMHIRLLLITFF 499

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
            Q   ++I++ HL+++  PLFR+    ++VY + E  K++ +E+      GK EI+RFKG
Sbjct: 500 LQFFPEVIKEGHLYILQTPLFRVRNKKETVYCYSEFEKREAIEKLS----GKAEITRFKG 555

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679
           LGE+   +  +  +  + R L  V +++D+       + +   MG    +R +FI +   
Sbjct: 556 LGEISPDEF-QYFIGEDIR-LDPVMLDQDM----SIAELLEFYMGKNTSDRQEFIIDNLK 609

Query: 680 FIDDVG 685
              ++ 
Sbjct: 610 V--ELD 613


>gi|218440010|ref|YP_002378339.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218172738|gb|ACK71471.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7424]
          Length = 1191

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 203/506 (40%), Positives = 296/506 (58%), Gaps = 11/506 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + NY A  I++LEGLEPVR RPGMYIG T  + LHHL  EV+DN++DE +AGY   IEV 
Sbjct: 2   TSNYGAEQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVYEVVDNSIDEALAGYCTHIEVD 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +G +TV D+GRGIP + HP    KS LE ++T LHAGGKF    Y++SGGLHGVG+S
Sbjct: 62  INSDGSVTVTDDGRGIPTDTHP-TTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGVS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ ++VTV R   +F+Q++ RG+P++ LE +    +  GT ++F PD +IF    
Sbjct: 121 VVNALSEWVNVTVWRDKNVFTQRYERGVPVTALESQPDSNHSTGTSVSFLPDVQIFTGGI 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   L    +  AYL+   +  ++ ++        P  E + + GG+K Y+      +
Sbjct: 181 EFDYNTLAGRLRELAYLNAGARITFTDNR-----GEQPRVESYCYEGGIKEYVAYMCREK 235

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
             +  EI   + E+ G +   V         N  +  + N I T +GGTH  GL+  LTR
Sbjct: 236 QPLHEEIIYVQGERNGIY-IEVALQWYIDTYNDNLLGFANNIRTIDGGTHLEGLKAVLTR 294

Query: 341 GIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I   A      +    ++  +++     G++SV + EPEF GQTKTKL + + +  V++
Sbjct: 295 TINNVARKRNKIKDNEPNLAGENVREGLTGVISVKVPEPEFEGQTKTKLGNTEVRGIVDS 354

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            + +    YL  +P  A  ++E  ++  +     R+ RE V RK+ +    LPGKLADCS
Sbjct: 355 LVGEVLGEYLEFHPQIADAIIEKAVQAFKAAEAARRARELVRRKSVLESSPLPGKLADCS 414

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           +     +E+FIVEGDSAGGSAKQ R+R +QA+LPLRGKILN+      KI  N +I  L+
Sbjct: 415 ERDPARSEIFIVEGDSAGGSAKQGRDRRSQAILPLRGKILNIEKTDDAKIYKNNEIQSLI 474

Query: 518 QALGCRTRSQYRE-EDLRYEKVIIMT 542
            ALG   + +  E   LRY ++IIM+
Sbjct: 475 TALGLGIKGEEFEASQLRYHRIIIMS 500



 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 53/183 (28%), Positives = 90/183 (49%), Gaps = 9/183 (4%)

Query: 506  KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM-TDADVDGAHIASLLLTFFYQEMY 564
            K+  N++I  +   +   +             +    TDADVDGAHI +LLLTFFY+   
Sbjct: 1014 KVITNEEIELVGDYVYDFSVEGDENFVCGVGGLCAHNTDADVDGAHIRTLLLTFFYRYQR 1073

Query: 565  DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
             +++Q ++++  PPL+++ +G    Y ++E   Q+ + E   +      I RFKGLGEM+
Sbjct: 1074 AIVDQGYIYIACPPLYKVERGRNHRYCYNERELQQYINELPPNAN--YSIQRFKGLGEMM 1131

Query: 625  ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA--SFID 682
              QL +T M+   R + +VEI          ++    LMG +   R  FI+       ++
Sbjct: 1132 PQQLWDTTMNPETRMIKQVEIED----AAKAEELFTILMGDRVSPRRDFIETHGPRLNLN 1187

Query: 683  DVG 685
            D+ 
Sbjct: 1188 DLD 1190


>gi|171912370|ref|ZP_02927840.1| DNA topoisomerase IV subunit B [Verrucomicrobium spinosum DSM 4136]
          Length = 638

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 194/664 (29%), Positives = 304/664 (45%), Gaps = 72/664 (10%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----EKALHHLFSEVIDNAMDEVIAGYA 94
           A+  Y   SIR L+  E +R+RPGMYIG        E  ++ L  EVIDN +DE + GY 
Sbjct: 2   ANHGYTEDSIRSLDWREHIRLRPGMYIGKLGDGTAPEDGIYVLLKEVIDNTIDEHVMGYG 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             +E+++      T+ D GRG+P+    +             ++ G K+D+  ++ S GL
Sbjct: 62  KEVEITI-EENVCTIRDYGRGVPLGKLMECA---------AQINTGAKYDSEVFKRSVGL 111

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           +GVGI  VNALSD   +   R+    + +FS+G+ +  ++      ++ GT+ITF PDP 
Sbjct: 112 NGVGIKAVNALSDRFDIQAYREGKTRAIEFSQGLVVKEMKNPVATTDRDGTKITFHPDPT 171

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
            F     F    + +M +  A+L+  +    + +K             F    GL   L 
Sbjct: 172 SFAGDYAFRLDFIREMLRFYAWLNPGLTLTLNGEK-------------FRSKDGLIDLLN 218

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
            KL             K          VE A         E  S+ N   T +GGTH + 
Sbjct: 219 AKLTEEPQYPIIYLASK---------EVEVAFTHGVGYGEECYSFVNGQHTTQGGTHLAA 269

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA- 392
            R AL    +++      K+       D+  S V  +SV ++EP F  QTKTKL S    
Sbjct: 270 FREALVAEAREFF-----KK--QFDPSDVRGSLVAAVSVKVQEPVFESQTKTKLGSTTME 322

Query: 393 ------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
                 + T+ N +    D+YL ++   A  +LE +    +ER      +++ R++A + 
Sbjct: 323 PNGRSLRTTIVNFVTSQLDNYLHKHGDVAKAMLEKIQANEKERKEISGIQKIARESARKA 382

Query: 447 LRLPGKLADC------SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
                KL DC             + LFI EGDSA GS  ++R+ + QAV  LRGK LN  
Sbjct: 383 KVHNKKLRDCRVHLDTKNPDREKSTLFITEGDSASGSITKSRDVNFQAVFSLRGKPLNCF 442

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
               +    N++   L  AL          E+LRY+ V++ TDADVDG HI  L++TFF 
Sbjct: 443 GLTRKVCYENEEFNLLQNALNIEEDL----EELRYQNVVMATDADVDGMHIRLLMITFFL 498

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           Q   +LI + HL+++  PLFR+    ++ Y + +E + K + +  K      EI+RFKGL
Sbjct: 499 QFYPELIRRGHLYILQTPLFRVRNKKETFYCYSDEERFKAIAKCGKAA----EITRFKGL 554

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GE+   + K   +    R L  V + +     K  ++ +   MG    +R ++I +    
Sbjct: 555 GEISPDEFKH-FIGPKMR-LEPVLMPEH----KSIKELLTFYMGKNTPDRQEYIVQNLRV 608

Query: 681 IDDV 684
             D+
Sbjct: 609 EHDI 612


>gi|121700316|ref|XP_001268423.1| DNA topoisomerase II [Aspergillus clavatus NRRL 1]
 gi|119396565|gb|EAW06997.1| DNA topoisomerase II [Aspergillus clavatus NRRL 1]
          Length = 1735

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 158/735 (21%), Positives = 283/735 (38%), Gaps = 85/735 (11%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDS-------------PAFANQSASDNYDAS 47
           M+DD   L +  PP+    +   KK G  P +                 + +AS+ Y   
Sbjct: 75  MSDDDASL-AQTPPKKVKKAPAAKKGGSKPLADVENESFGGDAGDEPAKSTNASEKY--- 130

Query: 48  SIRILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDN 84
             + L  LE +  RP  YIG  +                          L+ +F E++ N
Sbjct: 131 --QKLTQLEHIIKRPDTYIGSVERTTQHMWVYSSTTEGMEYREVSYVPGLYKIFDEIVVN 188

Query: 85  AMDEVIAG-YANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142
           A D        + I V++D   G ++V +NGRGIP+E H K       E+I   L     
Sbjct: 189 AADNKQNDAKMDEIRVTVDRESGEISVWNNGRGIPIEIHSK-EGIYVPELIFGHLLTSSN 247

Query: 143 FDNSTYEISGGLHGVGISVVNALSDEL--HVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           +D++  +++GG +G G  + N  S E       +RQ   + Q ++  +      K    +
Sbjct: 248 YDDTQQKVTGGRNGFGAKLCNVFSTEFTIETQDSRQKKKYKQTWTSNMSKMGKAKITDAK 307

Query: 201 NKRGTRITFRPDPKIFGDK-AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
               T++TF+PD   FG      D   L+K        + +V    +  +     +    
Sbjct: 308 GDDYTKVTFKPDYARFGMDGMDDDFEALVKRRVYDLAGTAKVAVKLNGSRVPIRNFKK-- 365

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYC 319
               Y     K   + + E  +    EI T             E      + +    S+ 
Sbjct: 366 ----YMEMYTKAIRRERGEEDAGAKDEIITCS------PDPHWEVGFTVSDGSFHQVSFV 415

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEF 379
           N+I T  GGTH + +   +   +       +NK   ++    +       ++  I  P F
Sbjct: 416 NSIATTSGGTHVNYIADQICVKLAD-QVKKKNKNGATLKPAQIRNHIFIFVNALIVNPAF 474

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN 439
             QTK +L +  +Q   +  L + F   +++     T+++  ++  ++ +  +  ++   
Sbjct: 475 TSQTKEQLTTKSSQFGSKCVLEEDFYKKILK-----TEVMNNILHFAQAKADQMLKKTDG 529

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKI 496
            +                    H   L + EGDSA G A   R         V PLRGK+
Sbjct: 530 GRRTRMNNPKLVDANKAGTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKL 589

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLL 555
           LNV  A  E+I  NQ+I ++   +G + + +Y +   LRY  ++IMTD D DG+HI  LL
Sbjct: 590 LNVRDASFEQISKNQEIQNIKNFMGLQHKKEYIDTRGLRYGHLMIMTDQDHDGSHIKGLL 649

Query: 556 LTFFYQEMYDLIEQK-HLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGK 609
           + F   +   L++    L     P+ ++ +G     TK          +   E+     +
Sbjct: 650 INFLQAQFPSLLKIPEFLIEFITPIIKVWKGDPKNPTKQRSFFTMPEYEAWKEQHG--HE 707

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669
              E   +KGLG       +    D ++       +    +  +  + + +K    KADE
Sbjct: 708 RGWEHKYYKGLGTSTTEDAQVYFRDLDRHLKEFHTLQD--HETELIELAFSK---KKADE 762

Query: 670 RFKFIQE--RASFID 682
           R +++++    +F+D
Sbjct: 763 RKEWLRQFKPGTFLD 777


>gi|28277299|gb|AAH44276.1| LOC398512 protein [Xenopus laevis]
          Length = 1132

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 140/662 (21%), Positives = 263/662 (39%), Gaps = 64/662 (9%)

Query: 50  RILEGLEPVRMRPGMYIGGTDE----------------------KALHHLFSEVIDNAMD 87
           +    LE + +RP  YIG  +                         L+ +F E++ NA D
Sbjct: 33  QKKTQLEHILLRPDTYIGSVEPVTQQMWVFDEDEGLNCRDITFVPGLYKIFDEILVNAAD 92

Query: 88  EVIAGY-ANLIEVSLDGNG-FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
                   + I++++D +   ++V +NG+GIPV  H K        +I   L     +D+
Sbjct: 93  NKQRDPTMSCIKITIDPDNNTISVWNNGKGIPVVEH-KVEKVYVPALIFGQLLTSSNYDD 151

Query: 146 STYEISGGLHGVGISVVNALSDELHVT--VARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
              +++GG +G G  + N  S++  V         IF Q ++  +  +P  K +    + 
Sbjct: 152 DQKKVTGGRNGYGAKLCNIFSNKFTVETACREYKKIFKQTWTNNMSNAPDPKIKPFEGED 211

Query: 204 GTRITFRPDPKIFGDK--AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
            T ITF+PD   F  +       A + +     A  S  VK   +  +            
Sbjct: 212 FTCITFQPDLSKFKMQILDKDIVALMSRRAYDVAGSSKGVKVFLNGKRLPV--------- 262

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
                 G +TY++  L+++   +   F    E+        E  +   E+  +  S+ N+
Sbjct: 263 -----SGFRTYVEMYLKDKLDETGNPFKVMHEQ---VNDRWEVCLTMSEKGFQQISFVNS 314

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
           I T +GG H   +   +   +       +NK  IS+    +       ++  I  P F  
Sbjct: 315 IATTKGGRHVDYVADQIVTKLID-VVKKKNKGGISVKPFQVKNHMWVFVNALIENPTFDS 373

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK  +         +  L + F      +      +L WV  +++   +  K+    + 
Sbjct: 374 QTKENMTLQSKSFGSKCTLSEKFIK-GATSCGIVESILNWVKFKAQ--TQLNKKCSAVKH 430

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILN 498
           T I+ +       D     +    L + EGDSA   A        R    V PLRGK+LN
Sbjct: 431 TKIKGIPKLDDANDAGSRNSLECTLILTEGDSAKTLAVSGLGVVGRDRYGVFPLRGKLLN 490

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREED----LRYEKVIIMTDADVDGAHIASL 554
           V  A  ++I  N +I ++++ +G + +  Y + +    LRY K++IMTD D DG+HI  L
Sbjct: 491 VREASHKQIMENAEINNIIKIVGLQYKKNYDDNESLRTLRYGKIMIMTDQDQDGSHIKGL 550

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           L+ F +     L++   L     P+ ++T+  + +  +     ++     + H     +I
Sbjct: 551 LINFIHHNWPSLLKHCFLEEFITPIIKVTKNKQELSFYSIPEFEEWKNNTESH--KTWKI 608

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
             +KGLG   + + KE   D  +   +  +    ++       + ++    K D+R +++
Sbjct: 609 KYYKGLGTSTSKEAKEYFADMERHR-IPFKYAGPIDDAA-ITMAFSR---KKVDDRKEWL 663

Query: 675 QE 676
             
Sbjct: 664 TN 665


>gi|327283546|ref|XP_003226502.1| PREDICTED: DNA topoisomerase 2-beta-like [Anolis carolinensis]
          Length = 1640

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 139/696 (19%), Positives = 257/696 (36%), Gaps = 69/696 (9%)

Query: 16  SQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE---- 71
              ++   K+  E          S    Y          LE + +RP  YIG  +     
Sbjct: 39  DNQNNAAKKEEPEHTSKNDSKKMSVERVYQKK-----TQLEHILLRPDTYIGSVEPVTQL 93

Query: 72  ------------------KALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN-GFLTVVD 111
                               L+ +F E++ NA D          I++S+D     +++ +
Sbjct: 94  MWVFDEDIGMNCREITFVPGLYKIFDEILVNAADNKQRDKNMTCIKISIDAESNIISIWN 153

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171
           NG+GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V
Sbjct: 154 NGKGIPVVEH-KVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTV 212

Query: 172 TVARQNTIFSQKFSR--GIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARL 227
             A +    S K +    +  +   K +       T +TF+PD              A +
Sbjct: 213 ETACKEYKHSFKQTWLNNMMKTSDPKIKHFEGDDYTCVTFQPDLAKFKMEKLDKDTVALM 272

Query: 228 LKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEI 287
            +     A     VK  ++  K                  G ++Y+   ++++   +   
Sbjct: 273 TRRAYDLAGACKGVKIMFNGKKLPV--------------NGFRSYVDLYVKDKLDETGVA 318

Query: 288 FTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
                E         +  +   E+  +  S+ N+I T +GG H   +   +   + +   
Sbjct: 319 LKVTHEL---ANERWDVCLTLSEKGFQQVSFVNSIATTKGGRHVDYVVDQIVGKLIE-VV 374

Query: 348 LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
             +NK  +S+    +       ++  I  P F  QTK  +         +  L + F   
Sbjct: 375 KKKNKAGVSVKPFQVKNHIWVFINCLIENPSFDSQTKENMTLQPKSFGSKCQLSEKFFK- 433

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
              N      +L WV  +++   +  K+    + + I+ +       D     +    L 
Sbjct: 434 AASNCGIVESILNWVKFKAQ--TQLNKKCSSVKHSKIKGIPKLDDANDAGGKHSLDCTLI 491

Query: 468 IVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           + EGDSA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +G + 
Sbjct: 492 LTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQY 551

Query: 525 RSQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           +  Y + +    LRY K++IMTD D DG+HI  LL+ F +     L++   L     P+ 
Sbjct: 552 KKSYEDPESLKSLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIV 611

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           + ++  + +  +      +  +  + H     +I  +KGLG   A + KE   D  +  +
Sbjct: 612 KASKNKQELAFYSIPEFDEWKKHMENH--KAWKIKYYKGLGTSTAKEAKEYFADMERHRI 669

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           L                + +K    K D+R +++  
Sbjct: 670 LF--RYAGPEDDAAITLAFSK---KKIDDRKEWLTN 700


>gi|320032749|gb|EFW14700.1| DNA topoisomerase 2 [Coccidioides posadasii str. Silveira]
          Length = 1717

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 157/722 (21%), Positives = 279/722 (38%), Gaps = 72/722 (9%)

Query: 7   DLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQS------ASDNYDASSIRILEGLEPVRM 60
            L S  PP+     + +  + +   +P    Q+      AS    +   + L  +E +  
Sbjct: 89  SLLSNTPPKPVKKGKAVGAAKKSTANPLSTVQNESVTNEASSGKSSDQYQKLSQVEHIIK 148

Query: 61  RPGMYIGGTD-----------------------EKALHHLFSEVIDNAMDEVIAGY-ANL 96
           RP  YIG  +                          L+ +F E++ NA D        + 
Sbjct: 149 RPDTYIGSIERTQQNMWVYNSTTDQMEYREVSYVPGLYKIFDEILVNAADNKQRDNNMSE 208

Query: 97  IEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
           I+V+LD   G ++V +NGRGIPVE H K       E+I   L     +D+   +++GG +
Sbjct: 209 IKVTLDMEAGEISVWNNGRGIPVEIHSK-EKIYIPELIFGHLLTSSNYDDDQAKVTGGRN 267

Query: 156 GVGISVVNALSDELHVTVA--RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD- 212
           G G  + N  S E  V  A  R    + Q +   +      K  + +    T+ITF+PD 
Sbjct: 268 GYGAKLCNIFSTEFTVETADSRSKKKYRQTWQDNMSKMGKAKITESKGNDYTKITFKPDF 327

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            K   +    D   L+K        + RV    +  +     +        Y     K  
Sbjct: 328 KKFGMEGMDADFEALVKRRVYDLAGTCRVTVRLNGSRIPISNFKK------YMEMYTKAI 381

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHES 332
            + + E  +   SEI T  TE         E   A  + + +  S+ N+I T  GGTH +
Sbjct: 382 KRERGEEAASDKSEIVTDSTE------PRWEIGFAVSDGSFQQVSFVNSIATTSGGTHVN 435

Query: 333 GLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
            +   +   +   A   +NK    +    +       ++  I  P F  QTK +L +  +
Sbjct: 436 YISDQICSKLAD-AVKKKNKTGPLLKPAQIRNHIFLFVNCLIVNPAFTSQTKEQLTTKQS 494

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
           Q   +  L + F   +++  +        ++  +E++  +  ++    + A         
Sbjct: 495 QFGSKCVLSEEFLKKILKTQVMQN-----IMHFAEQKADQILKKTDGSRRARMNNPKLTD 549

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRN 509
                    H   L + EGDSA G A   R         V PLRGK+LNV  A  ++I  
Sbjct: 550 ANKAGTKEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQISK 609

Query: 510 NQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           NQ+I ++   LG + + +Y +   LRY  ++IMTD D DG+HI  LL+ +       L++
Sbjct: 610 NQEIQNIKNFLGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPSLLK 669

Query: 569 Q-KHLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
               L     P+ ++ +G     T S         ++  +        + +   +KGLG 
Sbjct: 670 IPGFLIEFITPIVKVWKGDPKNPTASKSFFTLPEYEEWKKSHG--HDRRWDKKYYKGLGT 727

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE--RASF 680
                 +    D ++       +       +    + +K    KAD+R +++++    ++
Sbjct: 728 SSTEDAEVYFRDLDRHLKEFHAMQDTE--AQLIDLAFSK---KKADDRKEWLRQFKPGTY 782

Query: 681 ID 682
           +D
Sbjct: 783 LD 784


>gi|303322098|ref|XP_003071042.1| DNA topoisomerase II, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240110741|gb|EER28897.1| DNA topoisomerase II, putative [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 1717

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 157/722 (21%), Positives = 279/722 (38%), Gaps = 72/722 (9%)

Query: 7   DLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQS------ASDNYDASSIRILEGLEPVRM 60
            L S  PP+     + +  + +   +P    Q+      AS    +   + L  +E +  
Sbjct: 89  SLLSNTPPKPVKKGKAVGAAKKSTANPLSTVQNESVTNEASSGKSSDQYQKLSQVEHIIK 148

Query: 61  RPGMYIGGTD-----------------------EKALHHLFSEVIDNAMDEVIAGY-ANL 96
           RP  YIG  +                          L+ +F E++ NA D        + 
Sbjct: 149 RPDTYIGSIERTQQNMWVYNSTTDQMEYREVSYVPGLYKIFDEILVNAADNKQRDNNMSE 208

Query: 97  IEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
           I+V+LD   G ++V +NGRGIPVE H K       E+I   L     +D+   +++GG +
Sbjct: 209 IKVTLDMEAGEISVWNNGRGIPVEIHSK-EKIYIPELIFGHLLTSSNYDDDQAKVTGGRN 267

Query: 156 GVGISVVNALSDELHVTVA--RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD- 212
           G G  + N  S E  V  A  R    + Q +   +      K  + +    T+ITF+PD 
Sbjct: 268 GYGAKLCNIFSTEFTVETADSRSKKKYRQTWQDNMSKMGKAKITESKGNDYTKITFKPDF 327

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            K   +    D   L+K        + RV    +  +     +        Y     K  
Sbjct: 328 KKFGMEGMDADFEALVKRRVYDLAGTCRVTVRLNGSRIPISNFKK------YMEMYTKAI 381

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHES 332
            + + E  +   SEI T  TE         E   A  + + +  S+ N+I T  GGTH +
Sbjct: 382 KRERGEEAASDKSEIVTDSTE------PRWEIGFAVSDGSFQQVSFVNSIATTSGGTHVN 435

Query: 333 GLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
            +   +   +   A   +NK    +    +       ++  I  P F  QTK +L +  +
Sbjct: 436 YISDQICSKLAD-AVKKKNKTGPLLKPAQIRNHIFLFVNCLIVNPAFTSQTKEQLTTKQS 494

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
           Q   +  L + F   +++  +        ++  +E++  +  ++    + A         
Sbjct: 495 QFGSKCVLSEEFLKKILKTQVMQN-----IMHFAEQKADQILKKTDGSRRARMNNPKLTD 549

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRN 509
                    H   L + EGDSA G A   R         V PLRGK+LNV  A  ++I  
Sbjct: 550 ANKAGTKEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQISK 609

Query: 510 NQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           NQ+I ++   LG + + +Y +   LRY  ++IMTD D DG+HI  LL+ +       L++
Sbjct: 610 NQEIQNIKNFLGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPSLLK 669

Query: 569 Q-KHLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
               L     P+ ++ +G     T S         ++  +        + +   +KGLG 
Sbjct: 670 IPGFLIEFITPIVKVWKGDPKNPTASKSFFTLPEYEEWKKSHG--HDRRWDKKYYKGLGT 727

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE--RASF 680
                 +    D ++       +       +    + +K    KAD+R +++++    ++
Sbjct: 728 SSTEDAEVYFRDLDRHLKEFHAMQDTE--AQLIDLAFSK---KKADDRKEWLRQFKPGTY 782

Query: 681 ID 682
           +D
Sbjct: 783 LD 784


>gi|328724888|ref|XP_001948540.2| PREDICTED: DNA topoisomerase 2-like isoform 1 [Acyrthosiphon pisum]
 gi|328724890|ref|XP_003248280.1| PREDICTED: DNA topoisomerase 2-like isoform 2 [Acyrthosiphon pisum]
          Length = 1537

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 129/691 (18%), Positives = 262/691 (37%), Gaps = 71/691 (10%)

Query: 22  KLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE---------- 71
              ++G  P +P     +  + Y   S      LE + +RP  YIG  +           
Sbjct: 2   ASVENGTPPAAPKSKKTAVEEIYQKKS-----QLEHILLRPDTYIGSVEPVTESMWVYDT 56

Query: 72  -------------KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGI 116
                          L+ +F E++ NA D        + I++ ++     ++V +NG+GI
Sbjct: 57  EEDSMVQREITYVPGLYKIFDEILVNAADNKQRDQTMDTIKIDINKEENIISVWNNGKGI 116

Query: 117 PVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTV--A 174
           PV  H K        +I   L     +++   +++GG +G G  + N  S++  V     
Sbjct: 117 PVVEH-KDEKMYVPTMIFGHLLTSSNYNDEEAKVTGGRNGFGAKLCNIFSNKFTVETASR 175

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKMTQ 232
                F Q ++  +  S     ++V+    T+++F PD                + +   
Sbjct: 176 EYRKAFKQTWADNMAKSSDPSIKEVKTTDYTKVSFSPDLAKFRMTCLDKDIVDLMSRRAY 235

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             A  +  V+   +                       + Y+   ++ +            
Sbjct: 236 DVAASTRGVRVYLNGK--------------LLPIKTFQDYVNLYIKGKEDEIGNPLKLVY 281

Query: 293 EKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK 352
           E  G      E A+   +   +  S+ N+I T +GG H   +   + + +       +NK
Sbjct: 282 ENAG---QRWEVAVTMSDTGFKQVSFVNSIATTKGGRHVDYITDMIVKQLTD-IVKKRNK 337

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             + + +  +       ++  I  P F  QTK  +         +  L + F    V   
Sbjct: 338 GGMDLKNHQVKNHLWVFVNCLIVNPTFDSQTKEHMTLQVKNFGSKCTLSEKFVT-GVSKC 396

Query: 413 IEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
                +L W   +++    + +++   +++ ++ +       D     +    L + EGD
Sbjct: 397 GIVEAVLSWAKFKAQ---TQLQKQSGKKQSKLKGVPKLEDANDAGTRNSIDCTLILTEGD 453

Query: 473 SAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           SA   A        R    V PLRGK+LNV  A  ++I +N +I ++V+ +G + + +Y 
Sbjct: 454 SAKSLAVSGLGVVGRDKYGVFPLRGKLLNVREASHKQIMDNAEISNIVKIVGLQYKKKYE 513

Query: 530 EED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG 585
             +    LRY +++IMTD D DG+HI  L++ F +     L++   L     P+ + T+G
Sbjct: 514 TMEDLKSLRYGRLMIMTDQDQDGSHIKGLIINFIHHNWPTLLKLPFLEEFITPIVKATKG 573

Query: 586 TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645
                 +     ++  +  +     K +I  +KGLG   + + KE   +  +  +L  + 
Sbjct: 574 KDETSFYSLPEFEEWKDATRNWN--KYKIKYYKGLGTSTSKEAKEYFQNMKRHRIL-FKY 630

Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
               +  +  + + +K M    D R +++  
Sbjct: 631 EDAGDD-EHIEMAFSKKM---VDSRKEWLTN 657


>gi|134077492|emb|CAK96636.1| unnamed protein product [Aspergillus niger]
          Length = 1712

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 156/729 (21%), Positives = 284/729 (38%), Gaps = 80/729 (10%)

Query: 8   LFSTLPPQSQGSSEKLKKSGEI--------------PDSPAFANQSASDNYDASSIRILE 53
           + S  PP+    +    K G                       + +AS+ Y  +SI  L 
Sbjct: 86  VLSHTPPKKAKKTAGPSKKGGAKPLADVENESFGKDDSVEPGKSNNASEKYQKASISGLT 145

Query: 54  GLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDNAMDEVI 90
            LE +  RP  YIG  +                          L+ +F E++ NA D   
Sbjct: 146 QLEHIIKRPDTYIGSVERTTQQMWVYSSESDGMEYREVSYVPGLYKIFDEIVVNAADNKQ 205

Query: 91  AG-YANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148
                + I V++D   G ++V +NGRGIP+E H K       E+I   L     +D++  
Sbjct: 206 NDENMSEIRVTVDRESGVISVWNNGRGIPIEMHAK-EKIYVPELIFGHLLTSSNYDDTQQ 264

Query: 149 EISGGLHGVGISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +++GG +G G  + N  S E  +      Q   + Q ++  +      K  + + +  T+
Sbjct: 265 KVTGGRNGFGAKLCNVFSTEFSIETQDSSQKKKYRQTWTENMTKIGKAKITEAKGEDYTK 324

Query: 207 ITFRPDP-KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           +TF+PD  K   D    D   L+K        + +V    +  +     +        Y 
Sbjct: 325 VTFKPDYAKFGMDGMDDDFEALVKRRVYDLAGTAKVNVKLNGTRIPIRGFKK------YM 378

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTD 325
               K   + + +       EI T             E   A  +   +  S+ N+I T 
Sbjct: 379 EMYTKAIRKERGDTGPAPKDEIITCS------PDPRWEVGFAVSDGAFQQVSFVNSIATT 432

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
            GGTH + +   +   + +     +NK   ++ +  +       ++  I  P F  QTK 
Sbjct: 433 SGGTHVNYIADQICNRLAE-QVKKKNKNGATLKTAQIRNHIFIFVNALIVNPAFTSQTKE 491

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIR 445
           +L +  +Q   +  L + F   +++     T ++E ++  ++++  +  ++    + +  
Sbjct: 492 QLTTKASQFGSKCVLDEDFYKKILK-----TAVMENILHFAQQKADQMLKKTDGGRRSRM 546

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASA 502
                           H   L + EGDSA G A   R         V PLRGK+LNV  A
Sbjct: 547 NNPKLTDANKAGTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDA 606

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
             ++I  NQ+I ++   LG + + +Y +   LRY  ++IMTD D DG+HI  LL+ F   
Sbjct: 607 SFDQISKNQEIQNIKNFLGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINFLQA 666

Query: 562 EMYDLIEQK-HLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615
           +   L++    L     P+ ++ +G     TK          +   EE +   +   +  
Sbjct: 667 QFPSLLKIPEFLIEFITPIVKVWKGDPKNPTKQRSFFTMPEYEAWAEEHQ--HERGWDHK 724

Query: 616 RFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675
            +KGLG       +    D ++       +    N  +  + + +K    KADER ++++
Sbjct: 725 YYKGLGTSTTEDAQVYFRDLDRHLKEFHTMQD--NEAELIELAFSK---KKADERKEWLR 779

Query: 676 E--RASFID 682
           +    +F+D
Sbjct: 780 QFKPGTFLD 788


>gi|303276424|ref|XP_003057506.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461858|gb|EEH59151.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1473

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 155/703 (22%), Positives = 253/703 (35%), Gaps = 75/703 (10%)

Query: 18  GSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD------- 70
           G S     +     + +   +S  D Y          LE + +RP  Y+G  +       
Sbjct: 33  GDSSNAVVAPPTASATSSPGKSIEDIYQKK-----TQLEHILLRPDTYVGSCEKTEALTW 87

Query: 71  ----------------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDN 112
                              L+ +F E++ NA D  +       + V +D   G + V ++
Sbjct: 88  VYDKETNKLVQRNMSFVPGLYKIFDEILVNATDNKVRDPTMVTLRVDIDSAEGTIKVFND 147

Query: 113 GRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVT 172
           G GIPVE H K       E+I   L     +D++  +++GG +G G  + N  S E  + 
Sbjct: 148 GNGIPVEMH-KEEGVYVPELIFGHLLTSSNYDDNEKKVTGGRNGYGAKLANIFSTEFIIE 206

Query: 173 VARQNTIFSQK--FSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKA--GFDAARL 227
                     +  F   +         K +     T ITF+PD   F          A +
Sbjct: 207 TCDGARERRYRQVFKNNMGEKCEPVVTKCKKSDNWTCITFKPDLSKFNMTHLEDDTVALM 266

Query: 228 LKMTQSKAYLS-GRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSE 286
            K     A       K   + D+   +              G   Y+   LE R      
Sbjct: 267 CKRVYDAAGNIGKNTKIFLNGDRLKVK--------------GFSDYVDLYLEGRENAPKV 312

Query: 287 IFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYA 346
                  +K   R  V   I+      +  S+ N I T +GGTH + +   +        
Sbjct: 313 F------EKVNDRWEVCVTISDTGNFQQC-SFVNGICTMKGGTHVNAVADDVA-TKLLEK 364

Query: 347 ELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
              + K   ++ S  +       ++  I  P F  QTK  L +  A    + +  D    
Sbjct: 365 IKKKEKSCKNLKSTHVKNHLWVFVNALIENPAFDSQTKETLNTRAANFGSKFSASDAVIK 424

Query: 407 YLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
            ++ + I    L     ++S+E  +    ++      +  +       D     +    L
Sbjct: 425 KMMSSGIVEQILSWASFKQSKELKKNDGAKKTR----LTGIPKLDDANDAGGKNSEHCTL 480

Query: 467 FIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523
            + EGDSA   A    +   R    V PLRGK+LNV  A  E+I NN +I  + Q LG +
Sbjct: 481 ILTEGDSAKALAVSGLSVVGRDRYGVFPLRGKLLNVRDASHEQIMNNAEISYIKQILGLK 540

Query: 524 TRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFR 581
              QY     LRY  ++IMTD D DG+HI  LL+ F +     L++    L     P+ +
Sbjct: 541 HGIQYESAKSLRYGHIMIMTDQDHDGSHIKGLLINFLHAHFPSLLKIPGFLVEFITPIIK 600

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
            T+G KS   +     +   E     G     I  +KGLG   + + KE           
Sbjct: 601 ATKGKKSEVFYTMPEYENFKESLGDAGTKGWSIKYYKGLGTSTSKEAKEYFAALAHHR-K 659

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFI--QERASFID 682
               + D NS      + +K    + D+R +++   E  +F+D
Sbjct: 660 TFTWSDD-NSGDLIDMAFSK---KRVDDRKQWLTAYEPGTFLD 698


>gi|113681126|ref|NP_001038656.1| DNA topoisomerase 2-beta [Danio rerio]
 gi|94733296|emb|CAK11279.1| novel protein similar to vertebrate topoisomerase (DNA) II beta
           180kDa (TOP2B) [Danio rerio]
          Length = 1618

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 142/701 (20%), Positives = 261/701 (37%), Gaps = 69/701 (9%)

Query: 11  TLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD 70
               + + +        E+    +    S    Y          LE + +RP  YIG  +
Sbjct: 21  NGAKKEEMNGRGDAGKSEVVKKESSKKMSVERIYQKK-----TQLEHILLRPDTYIGSVE 75

Query: 71  E----------------------KALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN-GF 106
                                    L+ +F E++ NA D          I++++D     
Sbjct: 76  PVTQQMWVFDEEIGMNLREISFVPGLYKIFDEILVNAADNKQRDKNMTTIKITIDPESNT 135

Query: 107 LTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALS 166
           ++V +NG+GIPV  H K        +I   L     +D++  +++GG +G G  + N  S
Sbjct: 136 ISVWNNGKGIPVVEH-KDEKMYVPALIFGHLLTSSNYDDNEKKVTGGRNGYGAKLCNIFS 194

Query: 167 DELHVTVARQNTIFSQK--FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGF 222
            +  V  A +    S K  ++  +  S   K +    +  T +TF+PD   F  +     
Sbjct: 195 LKFTVETACKEYKRSFKQTWTENMGKSNEAKIKYFDGEDFTCVTFQPDLAKFNMEKLDKD 254

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
             A L +     A     VK   +  K                    ++Y+   ++++  
Sbjct: 255 IVALLTRRAYDVAGSCRGVKVILNGKKLPV--------------NSFRSYVDFYVKDK-- 298

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGI 342
              E          T     E  +   E+  +  S+ N+I T +GG H   +   +   +
Sbjct: 299 -LDETGVALKVVNETVNERWEVCLTMSEKGFQQISFVNSIATTKGGRHIDYIVDQIVGKL 357

Query: 343 KKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRD 402
            +     +NK  +S+    +       ++  I  P F  QTK  +         + AL +
Sbjct: 358 IE-VVKKKNKAGVSVKPFQVKNHLWVFVNALIENPTFDSQTKENMTLQTKSFGSKCALSE 416

Query: 403 PFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAH 462
            F      N      +L WV  +++   +  K+    + + I+ +       D     + 
Sbjct: 417 KFIRAAT-NCGIVESILNWVKFKAQ--TQLNKKCSSVKHSKIKGIPKLDDANDAGGKHSS 473

Query: 463 GTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
              L + EGDSA   A        R    V PLRGKILNV  A  ++I  N +I ++++ 
Sbjct: 474 ECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREATHKQIMENAEINNIIKI 533

Query: 520 LGCRTRSQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           LG + +  Y + +    LRY +++IMTD D DG+HI  LL+ FF+     L++   L   
Sbjct: 534 LGLQYKKSYDDPESLKSLRYGRIMIMTDQDQDGSHIKGLLINFFHHNWPSLLKHTFLEEF 593

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
             P+ + ++  + V  +     ++  +           I  +KGLG   + + KE   D 
Sbjct: 594 ITPIVKASKNKQEVSFYSIPEFEEWKK--HTESYKTWHIKYYKGLGTSTSKEAKEYFSDM 651

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
            +  ++                + +K    K D+R +++  
Sbjct: 652 ERHRIMF--KYNGTEDDAAITLAFSK---KKTDDRKEWLTN 687


>gi|111305596|gb|AAI21351.1| LOC779457 protein [Xenopus (Silurana) tropicalis]
          Length = 757

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 141/696 (20%), Positives = 265/696 (38%), Gaps = 69/696 (9%)

Query: 16  SQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE---- 71
              ++ K +++     + +    S    Y          LE + +RP  YIG  +     
Sbjct: 24  DNQNASKKEETESNNKNDSSKKMSVERVYQKK-----TQLEHILLRPDTYIGSVETVTQS 78

Query: 72  ------------------KALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN-GFLTVVD 111
                               L+ +F E++ NA D        N I++S+D +   +++ +
Sbjct: 79  MWVYDEDVGMNCRDITYVPGLYKIFDEILVNAADNKQRDKNMNCIKISIDPDSNIISIWN 138

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171
           NG+GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V
Sbjct: 139 NGKGIPVVEH-KVEKMYVPALIFGQLLTSSNYDDEEKKVTGGRNGYGAKLCNIFSTKFTV 197

Query: 172 TVARQNTIFSQK--FSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARL 227
             A +    S K  ++  +  +   K +       T ITF+PD              A L
Sbjct: 198 ETACKEYKHSFKQTWTNNMLKTTEPKIKHFDGDDYTCITFQPDLAKFQMEKLDKDTVALL 257

Query: 228 LKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEI 287
            +     A     VK   +  K                  G ++Y+   +++R   +   
Sbjct: 258 TRRAYDIAGSCKGVKVLLNGKKLPV--------------NGFRSYVDLYVKDRLDETGVA 303

Query: 288 FTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
                E         +  +   E+  +  S+ N+I T +GG H   +   +   + +   
Sbjct: 304 LKVIHE---VANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQIVSKLIE-VV 359

Query: 348 LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
             +NK  +S+    +       ++  I  P F  QTK  +         +  L + F   
Sbjct: 360 KKKNKAGVSVKPFQVKNHVWVFVNCLIENPTFDSQTKENMTLQPKGFGSKCQLSEKFSK- 418

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
              N      +L WV  +++   +  K+    + + I+ +       D     +    L 
Sbjct: 419 AASNCGIVESILNWVKFKAQ--TQLNKKCSSVKHSKIKGIPKLDDANDAGGKHSLDCTLI 476

Query: 468 IVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           + EGDSA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +G + 
Sbjct: 477 LTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQY 536

Query: 525 RSQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           +  Y + +    LRY K++IMTD D DG+HI  LL+ FF+     L++   L     P+ 
Sbjct: 537 KKSYDDNESLKTLRYGKIMIMTDQDQDGSHIKGLLINFFHHNWPSLLKHSFLEEFITPIV 596

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           + T+  + +  +     ++  ++     +   +I  +KGLG   + + KE   D ++  +
Sbjct: 597 KATKNKQELSFYSIPEFEEWKKQ--TENQKLWKIKYYKGLGTSTSKEAKEYFADMDRHRI 654

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           +                + +K    K D+R +++  
Sbjct: 655 IF--RYAGPEDDAAITLAFSK---KKVDDRKEWLTN 685


>gi|148222806|ref|NP_001082502.1| topoisomerase (DNA) II alpha 170kDa [Xenopus laevis]
 gi|47939759|gb|AAH72193.1| LOC398512 protein [Xenopus laevis]
          Length = 1579

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 140/662 (21%), Positives = 263/662 (39%), Gaps = 64/662 (9%)

Query: 50  RILEGLEPVRMRPGMYIGGTDE----------------------KALHHLFSEVIDNAMD 87
           +    LE + +RP  YIG  +                         L+ +F E++ NA D
Sbjct: 33  QKKTQLEHILLRPDTYIGSVEPVTQQMWVFDEDEGLNCRDITFVPGLYKIFDEILVNAAD 92

Query: 88  EVIAGY-ANLIEVSLDGNG-FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
                   + I++++D +   ++V +NG+GIPV  H K        +I   L     +D+
Sbjct: 93  NKQRDPTMSCIKITIDPDNNTISVWNNGKGIPVVEH-KVEKVYVPALIFGQLLTSSNYDD 151

Query: 146 STYEISGGLHGVGISVVNALSDELHVT--VARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
              +++GG +G G  + N  S++  V         IF Q ++  +  +P  K +    + 
Sbjct: 152 DQKKVTGGRNGYGAKLCNIFSNKFTVETACREYKKIFKQTWTNNMSNAPDPKIKPFEGED 211

Query: 204 GTRITFRPDPKIFGDK--AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
            T ITF+PD   F  +       A + +     A  S  VK   +  +            
Sbjct: 212 FTCITFQPDLSKFKMQILDKDIVALMSRRAYDVAGSSKGVKVFLNGKRLPV--------- 262

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
                 G +TY++  L+++   +   F    E+        E  +   E+  +  S+ N+
Sbjct: 263 -----SGFRTYVEMYLKDKLDETGNPFKVMHEQ---VNDRWEVCLTMSEKGFQQISFVNS 314

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
           I T +GG H   +   +   +       +NK  IS+    +       ++  I  P F  
Sbjct: 315 IATTKGGRHVDYVADQIVTKLID-VVKKKNKGGISVKPFQVKNHMWVFVNALIENPTFDS 373

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK  +         +  L + F      +      +L WV  +++   +  K+    + 
Sbjct: 374 QTKENMTLQSKSFGSKCTLSEKFIK-GATSCGIVESILNWVKFKAQ--TQLNKKCSAVKH 430

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILN 498
           T I+ +       D     +    L + EGDSA   A        R    V PLRGK+LN
Sbjct: 431 TKIKGIPKLDDANDAGSRNSLECTLILTEGDSAKTLAVSGLGVVGRDRYGVFPLRGKLLN 490

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREED----LRYEKVIIMTDADVDGAHIASL 554
           V  A  ++I  N +I ++++ +G + +  Y + +    LRY K++IMTD D DG+HI  L
Sbjct: 491 VREASHKQIMENAEINNIIKIVGLQYKKNYDDNESLRTLRYGKIMIMTDQDQDGSHIKGL 550

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           L+ F +     L++   L     P+ ++T+  + +  +     ++     + H     +I
Sbjct: 551 LINFIHHNWPSLLKHCFLEEFITPIIKVTKNKQELSFYSIPEFEEWKNNTESH--KTWKI 608

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
             +KGLG   + + KE   D  +   +  +    ++       + ++    K D+R +++
Sbjct: 609 KYYKGLGTSTSKEAKEYFADMERHR-IPFKYAGPIDDAA-ITMAFSR---KKVDDRKEWL 663

Query: 675 QE 676
             
Sbjct: 664 TN 665


>gi|72388575|gb|AAZ67931.1| DNA gyrase subunit B [Psychrobacter faecalis]
          Length = 721

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 191/515 (37%), Positives = 307/515 (59%), Gaps = 18/515 (3%)

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+ + I++ +  +  ++V+DNGRG+PV+ HP+    S  ++I+T LHAGGKF++++Y++S
Sbjct: 1   GHCDQIDIIIHEDESVSVLDNGRGVPVDIHPE-EGVSAAQVIMTVLHAGGKFEDNSYKVS 59

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS +L + + R+   + Q ++ G+P + +++ E   +K GT+I F P
Sbjct: 60  GGLHGVGVSVVNALSKKLEMNIWREGYHYHQTYTDGVPDADIQQMEAT-DKTGTQIRFYP 118

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
              +F     F+   L K  +  ++L+  V+   + ++       I ++ EF   GGL  
Sbjct: 119 SNDVFTGTI-FEYDILAKRLRELSFLNSGVRIVLTDER-------IDKRHEFEHKGGLSE 170

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++      +  I+        +  G    +VE A+ W +    ++  + N I   +GGTH
Sbjct: 171 FVSYINAGKDGINEVFHFTSEQDDGI---SVEVALQWTDTYNEKVLCFTNNIPQRDGGTH 227

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            SG R ALTRG+  Y +      K  I    DD       I+SV + +P+F+ QTK KLV
Sbjct: 228 LSGFRSALTRGLNSYMDRENLFKKEKIVATGDDAREGLTAIVSVKVPDPKFSSQTKDKLV 287

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKL 447
           S + +  VE+A+ D F+ YL++NP     +   +I+ +  R   RK      RKT +   
Sbjct: 288 SSEVKSAVESAMHDKFNDYLLENPSAGKAIANKIIDAARARDAARKAREMTRRKTTLDIA 347

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +EL+IVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+
Sbjct: 348 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRSRKTQAILPLKGKILNVERARFDKM 407

Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
            ++ ++ +L+ ALGC     +Y  + +RY K+IIMTDADVDG+HI +LLLTFF+++  +L
Sbjct: 408 LSSAEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTDADVDGSHIRTLLLTFFFRQTPEL 467

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           IE+ ++++  PPL+++ +G + +Y  D+E  +  L
Sbjct: 468 IERGYIYIAQPPLYKVKKGRQELYLKDDEALKAYL 502


>gi|11498141|ref|NP_069366.1| DNA gyrase, subunit B (gyrB) [Archaeoglobus fulgidus DSM 4304]
 gi|2650095|gb|AAB90708.1| DNA gyrase, subunit B (gyrB) [Archaeoglobus fulgidus DSM 4304]
          Length = 507

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 176/522 (33%), Positives = 272/522 (52%), Gaps = 24/522 (4%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
            S       +++    + +          E   + +   GT + F+PD +IF     F  
Sbjct: 8   HSRSGWRCGSKETVKSTTRSISAEAGHRTEVLGETKEH-GTTVRFKPDREIFETT-EFKY 65

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             + +  +  AYL+  +K     ++E  E       E F+F  G+   +++   NR  + 
Sbjct: 66  EIVAQRLKELAYLNRGLKIILFDEREGKE-------ETFHFEDGIIGLVRSLNRNRKPLH 118

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
             I   +T K G    +VE AI + + +   I ++ N I T EGG+H  G R  LTR + 
Sbjct: 119 EPI-YIETTKDGV---SVEVAIQFTDSDVENIQAFANNINTSEGGSHVVGFRAGLTRAVN 174

Query: 344 KYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDP 403
           +Y +    K+   +   D+      ++SV + EP+F GQTKTKL + D +  VE+A+   
Sbjct: 175 EYGK-KHLKKFEPVTGVDIREGLTAVISVKVPEPQFEGQTKTKLTNSDVKTVVESAVYSG 233

Query: 404 FDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHG 463
              +L +NP +A  LL   I   + R   ++ +E+ ++       LPGKLADCS      
Sbjct: 234 VLRWLEENPAQAETLLNKFILNKKAREAAKRAKELVKRKNELITTLPGKLADCSSKNPEE 293

Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523
            ELFIVEG+SAGGSAKQAR+R  QA+LP++GKI+NV  AG  ++  N +I  ++ A+G  
Sbjct: 294 RELFIVEGESAGGSAKQARDRRFQAILPIKGKIINVEKAGMARVLKNDEIKAIISAIGAG 353

Query: 524 TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT 583
               +     RY ++IIMTDADVDGAHI +LLLTFFY+ M  LIE  +L++  PPL++I 
Sbjct: 354 IGKDFDITKARYRRIIIMTDADVDGAHIRTLLLTFFYRYMRPLIESGYLYIAQPPLYQIK 413

Query: 584 QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRV 643
           +G KS YA+ +E  ++ LE+      G  E+ R+KGLGEM   QL ET M+   R L++V
Sbjct: 414 KGKKSYYAYSDEELKRTLEQV-----GGGEVQRYKGLGEMNPQQLWETTMNPENRILIQV 468

Query: 644 EINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +       K   +  + LMG   + R  FI   +  + ++ 
Sbjct: 469 TLED----AKRADELFSILMGEDVESRRNFIMAHSKEVKNLD 506


>gi|297568942|ref|YP_003690286.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296924857|gb|ADH85667.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 608

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 183/650 (28%), Positives = 305/650 (46%), Gaps = 67/650 (10%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           YD S I+ L  LE +R+RPGMYIG        +  ++ L  EVIDN +DE I G    IE
Sbjct: 8   YDESKIKTLSSLEHIRLRPGMYIGRLGNGSHPDDGIYILLKEVIDNGVDEFIMGAGKTIE 67

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           +++   G + V D GRGIP+           +E + + ++ G K++   ++ S GL+GVG
Sbjct: 68  IAVGEEGSVRVRDYGRGIPLGK--------LVECV-SVINTGAKYNTDAFQFSVGLNGVG 118

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
              VNALS    VT  R        F  G      E+K   + K GT + F+PDP +F D
Sbjct: 119 TKAVNALSRRFEVTSFRDGEFARAVFVAGELQE--EEKGLSKEKNGTLVEFQPDPAMFPD 176

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   + K  +  AYL+  +   +  +   +EK  +   E      G + Y      
Sbjct: 177 YT-FNREFIRKRLKRYAYLNAGLHLDFDGESFYSEKGLLDLLE--AETSGTQLYEPIHFR 233

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           +++                    +E+A A  +       S+ N   T+EGGTH S  R  
Sbjct: 234 DKT--------------------IEFAFAHTDNYGETYFSFVNGTYTNEGGTHLSAFREG 273

Query: 338 LTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           L +GI ++A             +D+    VG ++V +REP F  QTK KL + D +  + 
Sbjct: 274 LLKGINEFAG-------KKFDGEDVREGVVGAVAVKVREPIFESQTKNKLGNTDIRAGIV 326

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             +RD    +L +N   A  +++ + + +  R   +  R+  +  A +      +L DC 
Sbjct: 327 AVVRDEVSAFLYKNTELAELVIDKIQQSARVRKELQHVRKEAKAKARKVALKIPQLKDCK 386

Query: 458 QNIAH--------GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
            + A            +F+ EG SA GS   AR+   QAV  L+GK  NV       +  
Sbjct: 387 YHPAPGKPSPSGRENMIFLTEGQSASGSIVSARDPMTQAVFSLKGKPYNVYGQPLATLYK 446

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N ++  +++AL            LR++K+II TDADVDG HI +L+LTFF      L+++
Sbjct: 447 NDEMYSIMRALDIE----DSIGRLRFDKIIIATDADVDGLHIRNLILTFFLHYFESLVKR 502

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK--IEISRFKGLGEMLASQ 627
            H++++  P+FR+    +++Y + ++ + +  ++    G  +  +EI+RFKGLGE+   +
Sbjct: 503 GHVYILETPIFRVRNKEETIYCYSDKERTEAEKKLAGRGSKRRPVEITRFKGLGEISPKE 562

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
            K+  +  + R L +V+I+    +L +    +   MG    +R ++I   
Sbjct: 563 FKQ-FIGPDMR-LQQVDID----TLSEVPRILEFYMGKNTPDRREYIMAH 606


>gi|149040009|gb|EDL94093.1| similar to topoisomerase (DNA) II beta [Rattus norvegicus]
          Length = 733

 Score =  399 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 139/693 (20%), Positives = 259/693 (37%), Gaps = 69/693 (9%)

Query: 19  SSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE------- 71
           ++ K ++      + +    S    Y          LE + +RP  YIG  +        
Sbjct: 18  NAAKKEELETANKNDSSKKLSVERVYQKK-----TQLEHILLRPDTYIGSVEPLTQLMWV 72

Query: 72  ---------------KALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN-GFLTVVDNGR 114
                            L+ +F E++ NA D          I+VS+D     +++ +NG+
Sbjct: 73  YDEDVGMNCREVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGK 132

Query: 115 GIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA 174
           GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V  A
Sbjct: 133 GIPVVEH-KVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETA 191

Query: 175 RQNTIFSQK--FSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKM 230
            +    S K  +   +  +   K +    +  T ITF+PD              A + + 
Sbjct: 192 CKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLAKFKMEKLDKDIVALMTRR 251

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
               A     VK  ++  K                  G ++Y+   ++++   +      
Sbjct: 252 AYDLAGSCKGVKVMFNGKKLPV--------------NGFRSYVDLYVKDKLDETGVALKV 297

Query: 291 KTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
             E         +  +   E+  +  S+ N+I T +GG H   +   +   + +     +
Sbjct: 298 IHEL---ANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIE-VVKKK 353

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
           NK  +S+    +       ++  I  P F  QTK  +         +  L + F      
Sbjct: 354 NKAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKCQLSEKFFK-AAS 412

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           N      +L WV  +++   +  K+    + + I+ +       D     +    L + E
Sbjct: 413 NCGIVESILNWVKFKAQ--TQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLILTE 470

Query: 471 GDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           GDSA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +G + +  
Sbjct: 471 GDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKS 530

Query: 528 YREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT 583
           Y + +    LRY K++IMTD D DG+HI  LL+ F +     L++   L     P+ + +
Sbjct: 531 YDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKAS 590

Query: 584 QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRV 643
           +  + +  +      +  +      +   +I  +KGLG   A + KE   D  +  +L  
Sbjct: 591 KNKQELSFYSIPEFDEWKKHI--ENQKAWKIKYYKGLGTSTAKEAKEYFADMERHRILF- 647

Query: 644 EINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
                         + +K    K D+R +++  
Sbjct: 648 -RYAGPEDDAAITLAFSK---KKIDDRKEWLTN 676


>gi|255946696|ref|XP_002564115.1| DNA topoisomerase II top2-Penicillium chrysogenum [Penicillium
           chrysogenum Wisconsin 54-1255]
 gi|211591132|emb|CAP97358.1| DNA topoisomerase II top2-Penicillium chrysogenum [Penicillium
           chrysogenum Wisconsin 54-1255]
          Length = 1725

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 159/735 (21%), Positives = 284/735 (38%), Gaps = 85/735 (11%)

Query: 1   MTDDSIDLFSTLPPQSQGSS-------------EKLKKSGEIPDSPAFANQSASDNYDAS 47
           M+DD   L S  PP+++ ++             E     G+     A  +  AS+ Y   
Sbjct: 79  MSDDDS-LLSRTPPKAKKTAAPKRAGSKPLADVENESHGGDAAADSASKSGDASEKY--- 134

Query: 48  SIRILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDN 84
             + L  LE +  RP  YIG T+                          L+ +F E++ N
Sbjct: 135 --QKLTQLEHIIKRPDTYIGSTERTTQQMWVYNSGTELMEFRDVSFVPGLYKIFDEIVVN 192

Query: 85  AMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142
           A D        N I +++D   G ++V +NGRGIP+E H K       E+I   L     
Sbjct: 193 AADNKHNDSSMNEIRITIDREAGEISVWNNGRGIPIEIHSK-EKIYVPELIFGHLLTSSN 251

Query: 143 FDNSTYEISGGLHGVGISVVNALSDE--LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           +D+S  +++GG +G G  + N  S E  L    +RQ   + Q ++  +      K    +
Sbjct: 252 YDDSQQKVTGGRNGFGAKLCNVFSTEFTLETQDSRQKKKYKQTWTENMTKMGKAKITDAK 311

Query: 201 NKRGTRITFRPDP-KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
               T++TF+PD  K   +    D   L+K        +  V    +  +     +    
Sbjct: 312 GDDYTKVTFKPDFAKFGMEGIDDDFESLVKRRVYDLAGTAGVAVKLNNTRVPIRSFRK-- 369

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYC 319
               Y     K   + + ++      EI T             E   A  + + +  S+ 
Sbjct: 370 ----YMEMYTKAIRKERGDDGPPTKDEIITCS------PDPRWEIGFAVSDGSFQQVSFV 419

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEF 379
           N+I T  GGTH + +   +   +       +NK   ++ S  +       +   I  P F
Sbjct: 420 NSIATTSGGTHVNYIADQICTRLAD-QVKKKNKSGATLKSAQIRNHIFIFVKALIVNPAF 478

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN 439
             QTK +L +  +Q   +  L + F   +++     T+++  ++  +E++  +  ++   
Sbjct: 479 TSQTKEQLTTKASQFGSKCPLDEDFYKKVLK-----TEVMSNILHFAEQKADQILKKGDT 533

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKI 496
            +                    H   L + EG+SA G A   R         V PLRGK+
Sbjct: 534 GRRTRMNNPKLVDANKAGTREGHHCTLILTEGESAKGLAMAGRAVVGPDLFGVFPLRGKL 593

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLL 555
           LNV  A  ++I  N +I  +   +G + + +Y +   LRY  ++IMTD D DG+HI  LL
Sbjct: 594 LNVRDASFDQISKNVEIQSIKNFIGLQHKKEYTDTKGLRYGHLMIMTDQDHDGSHIKGLL 653

Query: 556 LTFFYQEMYDLIEQK-HLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGK 609
           + F   +   L++    L     P+ ++ +G     TK           +  E  +   +
Sbjct: 654 INFLQAQFPSLLKIPEFLIEFITPIIKVWKGDPKNPTKQKSFFTMPEHDEWREAHQ--HE 711

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669
              E   +KGLG       +    D ++       +          + + +K    KADE
Sbjct: 712 RGWEHKYYKGLGTSTTEDAQVYFRDLDRHLKEFHTMQDGE--AGLIELAFSK---KKADE 766

Query: 670 RFKFIQE--RASFID 682
           R +++++    +F+D
Sbjct: 767 RKEWLRQFKPGTFLD 781


>gi|257456581|ref|ZP_05621776.1| DNA topoisomerase 4 subunit B [Treponema vincentii ATCC 35580]
 gi|257446001|gb|EEV21049.1| DNA topoisomerase 4 subunit B [Treponema vincentii ATCC 35580]
          Length = 604

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 182/659 (27%), Positives = 292/659 (44%), Gaps = 67/659 (10%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGY 93
           +A + YD S I+ L  LE +R+R GMYIG        +  ++ L  EV+DN++DE I G 
Sbjct: 2   AAKNTYDESKIKTLSSLEHIRLRTGMYIGRLGNGSNPDDGIYILLKEVLDNSIDEFIMGN 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
            + I+  L  +  +TV D GRGIP+           +E + + ++ G K+++  ++ S G
Sbjct: 62  GDRIDAML-QDNKVTVRDYGRGIPLGK--------VVECV-SVINTGAKYNDEVFQFSVG 111

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           L+GVG   VNALS+   V   R        F RG+     +   K   K GT + F PD 
Sbjct: 112 LNGVGTKAVNALSEYFRVVSVRDGKYAEAVFERGVLKHEKQGDAKKGIKNGTLVEFIPDR 171

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IFGD   F+   + K   + AYL+  +   ++                +    GL   L
Sbjct: 172 EIFGDY-AFNLDFIEKRMWNYAYLNAGLTLTFNG-------------ASYISENGLLDLL 217

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
             ++   +L +   F             +E+A            S+ N   T +GGTH S
Sbjct: 218 NAEIGEETLYTIAHF---------KEAKLEFAFTHTNNYGETYFSFVNGQYTSDGGTHLS 268

Query: 333 GLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
             +  L +GI +Y             S+D+       ++V ++ P F  QTK KL + + 
Sbjct: 269 AFKEGLLKGINEYYRKNYK-------SEDVREGTCAAVAVKVQAPVFESQTKNKLGNTEV 321

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
           +  + N  +     +L +N   A KL E ++     R      ++  +  A +      K
Sbjct: 322 RTWIVNGTKAAVVEWLQKNAEAARKLEEKILANERLRTELNSVKKEAKAAAKKIAMKIPK 381

Query: 453 LADCSQN-----IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
           L DC  +       + + +FI EGDSA GS   +R+   QA+  LRGK  N+       I
Sbjct: 382 LKDCKFHLGDKQYGNESMIFITEGDSASGSMVSSRDVLTQALFSLRGKPENMHGKKRAAI 441

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N ++ +++ ALG         E LRY K+II TDAD DG HI +LLLTFF     +L+
Sbjct: 442 YKNAELYNMMMALGIENSL----ESLRYNKIIIATDADNDGFHIRNLLLTFFLTYFEELV 497

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
               +F++  PLFR+    ++ Y + E+ +   ++          E++RFKGLGE+  S+
Sbjct: 498 LSGRIFILETPLFRVRTKKETCYCYSEKERDSEMKRLGTAA----EVTRFKGLGEISPSE 553

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
             +         LL V I     ++K     +   MG    ER  FI +    + ++  
Sbjct: 554 FGQFIG--KDIRLLPVSI----QTVKKIPGVLEFYMGKNTPERKAFIMKN--LLAEIDA 604


>gi|260941161|ref|XP_002614747.1| hypothetical protein CLUG_05525 [Clavispora lusitaniae ATCC 42720]
 gi|238851933|gb|EEQ41397.1| hypothetical protein CLUG_05525 [Clavispora lusitaniae ATCC 42720]
          Length = 760

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 161/730 (22%), Positives = 282/730 (38%), Gaps = 72/730 (9%)

Query: 1   MTDDSIDLFSTLP--PQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPV 58
           M++   D FS     P  +  S+  + +    +       +AS+ Y     + L  LE +
Sbjct: 1   MSESDGDYFSDSDVEPVPRKKSKTSESTPPSSNGTPGPRSNASEQY-----QKLSQLEHI 55

Query: 59  RMRPGMYIGGTD-----------------------EKALHHLFSEVIDNAMDEVIAGY-A 94
             RP  YIG  +                          L+ +F E++ NA D  I     
Sbjct: 56  LKRPDTYIGSVEKNKVEMWCFDSESESMVFKEVTIVPGLYKIFDEILVNAADNKIRDPSM 115

Query: 95  NLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
             I+V++D  N  ++V+++GRGIPVE H K       E+I   L     +D+   +++GG
Sbjct: 116 KNIKVNVDAPNNTISVMNDGRGIPVEIHTK-EQMYIPEMIFGNLLTSSNYDDDQKKVTGG 174

Query: 154 LHGVGISVVNALSDELHVTVARQN--TIFSQKFSRGIPLSPLEKKEKVRNKR-GTRITFR 210
            +G G  + N  S E  V  A QN   ++ Q ++  +      K  KV+NK+  T++TF+
Sbjct: 175 RNGFGAKLCNIFSTEFTVETADQNTGKLYIQTWTDNMSKVGKPKITKVKNKKEYTKVTFK 234

Query: 211 PDPKIFGDK--AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           PD   F          A L +                +  K               F G 
Sbjct: 235 PDLTKFNMDALDEDILAVLNRRVYDLCGTVKDCNIYLNEKKLAIRN----------FKGY 284

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGG 328
           ++ Y++        I+ ++       +  +    E A A  + N    S+ N+I T  GG
Sbjct: 285 VEMYVKAIQARSPQIAGDVTAPSIVYEQVNE-RWELAFAVSDGNFNQVSFVNSIATTAGG 343

Query: 329 THESGLRVA-LTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           TH   +    + + + +  +  + K+ + I ++ +       ++  I  P F  QTK +L
Sbjct: 344 THVKYVTDQIIDKLLAELNKQEKGKKKLMIKANQIKNHIFIFVNCLIENPAFTSQTKEQL 403

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL 447
            +  +Q   +   +       ++  ++                +   + +  R+T I+  
Sbjct: 404 TTRASQFASKQKDKVTITDQFIKKILKTNIRETIQSIVDANEGKALSKDDGKRRTRIKDQ 463

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGS 504
                         H   L + EGDSA   A        R      PLRGK+LNV  A +
Sbjct: 464 AKLVDANKAGTKEGHKCTLILTEGDSAKSLAVAGMAVIGRDYYGCFPLRGKLLNVRDAST 523

Query: 505 EKIRNNQQIMDLVQALGCRTRSQY---REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
           E+I  N +I  L Q +G + R  Y     +DLRY  V+IMTD D DG+HI  LL+ FF  
Sbjct: 524 EQIAKNAEITALKQIIGLQHRKHYTLENIKDLRYGHVMIMTDQDHDGSHIKGLLINFFES 583

Query: 562 EMYDLIEQ-KHLFLISPPLFRITQGTK------SVYAHDEEHKQKILEEFKKHGKGKIEI 614
               L+     L     P+ ++T   +       +  +     ++  +    + +     
Sbjct: 584 SFPGLLNIPGFLLEFITPIVKVTIKGRGRQAANVISFYSMPEFEEWRDTEGTNCR--WTH 641

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
             +KGLG   +    E     +K       +  D       + + +K    KAD+R +++
Sbjct: 642 KYYKGLGTSTSVDAVEYFSKLDKHLKEFHALESDE--PPLIELAFSK---KKADDRKEWL 696

Query: 675 Q--ERASFID 682
           Q  +  +F+D
Sbjct: 697 QGFQPGTFLD 706


>gi|42527747|ref|NP_972845.1| DNA topoisomerase IV subunit B [Treponema denticola ATCC 35405]
 gi|41818575|gb|AAS12764.1| topoisomerase IV, B subunit, putative [Treponema denticola ATCC
           35405]
 gi|325475013|gb|EGC78199.1| topoisomerase IV [Treponema denticola F0402]
          Length = 605

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 184/654 (28%), Positives = 288/654 (44%), Gaps = 67/654 (10%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           YD S I+ L  LE +R+R GMYIG        +  ++ L  EVIDN++DE I G  + I+
Sbjct: 8   YDESKIKTLSSLEHIRLRTGMYIGRLGDGSNPDDGIYILVKEVIDNSIDEFIMGNGSRID 67

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           +       +TV D GRGIP+           +E + + ++ G K+++  ++ S GL+GVG
Sbjct: 68  IQ-QEENKITVRDFGRGIPLGK--------LVECV-SVINTGAKYNDDVFQFSVGLNGVG 117

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
              VNALS+   V   R        F RG  +S      K   K GT + F PD KIFGD
Sbjct: 118 TKAVNALSEHFRVVAVRDGKYAEAIFERGKLVSEKSGNTKPGIKNGTLVEFIPDTKIFGD 177

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   + K   + AYL+  +   ++                F    GL   L++ + 
Sbjct: 178 Y-KFNLDFIEKRIWNYAYLNSGLTLSFNGK-------------LFKSENGLLDLLESNVG 223

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVA 337
             ++     F             +E+A +      E    + N   T +GGTH S  +  
Sbjct: 224 TSTIYEVCRF---------KEKQLEFAFSHTNNYGETYYSFVNGQYTSDGGTHLSAFKEG 274

Query: 338 LTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           L +GI +Y             S+D+       +SV I+ P F  QTK KL + + +  + 
Sbjct: 275 LLKGINEYFRKNYK-------SEDVREGTCAAVSVKIQAPVFESQTKNKLGNTEVRSWIV 327

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
           N  +     +L +N   A KL   +I   + R      ++  +  A +      KL DC 
Sbjct: 328 NDTKSAVVEWLQKNADSAAKLESKIIANEKLRTELNTVKKEAKAAAKKIAIKIPKLKDCK 387

Query: 458 QN-----IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
            +         T +FI EGDSA G+   +R+   QA+  LRGK  N+      +I  N +
Sbjct: 388 FHLGDGKFGEDTMIFITEGDSATGAMVSSRDVLTQAIFSLRGKPENMYGKKRAQIYKNAE 447

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           + +++ ALG         E LRY K++I TDAD DG HI +LLLTFF     +L+    +
Sbjct: 448 LYNMMMALGIEND----IEGLRYSKIVIATDADNDGFHIRNLLLTFFLSYFEELVTSGRV 503

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
            ++  PLFR+    ++ Y + E+ + + +           EI+RFKGLGE+   +  +  
Sbjct: 504 HILETPLFRVRTKKETSYCYSEKERDEAVSRLGASS----EITRFKGLGEISPKEFGQFI 559

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
                  LL V +     +LK     +   MG    ER KFI +    + ++  
Sbjct: 560 G--QDIKLLPVTV----QTLKKVPSILEFYMGKNTPERRKFIMKN--LLAEIDA 605


>gi|187917918|ref|YP_001883481.1| DNA topoisomerase IV subunit B [Borrelia hermsii DAH]
 gi|119860766|gb|AAX16561.1| hypothetical protein BH0036 [Borrelia hermsii DAH]
          Length = 598

 Score =  398 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 193/650 (29%), Positives = 307/650 (47%), Gaps = 67/650 (10%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYA 94
            ++NYD S I  L  LE +R+R GMYIG        +  ++ L  E+IDN++DE I GY 
Sbjct: 2   KTNNYDESKIVTLSSLEHIRLRSGMYIGRLGDGSNIDDGIYILVKEIIDNSIDEFIMGYG 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             I V    +  ++V D GRGIP+           +E + + ++ G K+++  ++ S GL
Sbjct: 62  KEI-VIKKEDNVISVRDYGRGIPLGK--------VVESV-SVINTGAKYNDDVFQFSVGL 111

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           +GVG   VNALS +  V   R+   F   FS+G  ++  E   K     GT I F  D +
Sbjct: 112 NGVGTKAVNALSSKFLVRSIREGNFFEAVFSKGNLINTTE--GKSDEHDGTYIEFLADTE 169

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IFG    +    L +     A L+  +K  ++              + F    GL  ++ 
Sbjct: 170 IFGKY-KYSEDFLRRRFFHYACLNKGLKINYND-------------QIFQSNNGLLDFIN 215

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
            ++++  L+ + ++            T+E+A +          S+ N   T +GGTH++G
Sbjct: 216 DEIKDEDLLYNFVYYSS--------KTLEFAFSHTNNYGETYFSFVNGQYTSDGGTHQTG 267

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            R    R I  +      K+  S    D+    V  LSV I++P F  QTK KL +++ +
Sbjct: 268 FREGFARAINDF-----LKKTYSST--DIREGLVATLSVKIKDPIFESQTKNKLGNIETR 320

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
             V   ++      L ++   A  +   V++    R      R   ++ A R      KL
Sbjct: 321 SNVAKEVQRVILEILYKDKTLAKAIESKVVDNERLRKELSSVRREAKERAKRISFKIPKL 380

Query: 454 ADCSQNIAHG------TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            DC  +          T +F+ EGDSA GS    R+   QA+  LRGK  N+      +I
Sbjct: 381 KDCKFHFNEKSMHSGSTMIFLTEGDSATGSMVSCRDVYTQAIFSLRGKPQNMFEKNKSEI 440

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N+++ +++ ALG         E+LRY K++I TDAD DG HI +LLLTFF     DL+
Sbjct: 441 YKNEELYNMMVALGIE----ESIENLRYNKIVIATDADFDGFHIRNLLLTFFLTYFEDLV 496

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
             KH++++  PLFR+   + ++Y + EE KQK + E K       E++RFKGLGE+  S+
Sbjct: 497 LNKHIYILETPLFRVRNKSSTIYCYSEEEKQKAIFELKN-----PEVTRFKGLGEISPSE 551

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
            +   +D     L +V    DL ++K+ ++ +   MG    ER  FI E 
Sbjct: 552 FRS-FIDVATIKLTKV----DLVNIKEIKEQLGFYMGPNTPERRNFIMEN 596


>gi|255012021|ref|ZP_05284147.1| DNA topoisomerase IV subunit B [Bacteroides fragilis 3_1_12]
 gi|313149858|ref|ZP_07812051.1| DNA topoisomerase IV subunit B [Bacteroides fragilis 3_1_12]
 gi|313138625|gb|EFR55985.1| DNA topoisomerase IV subunit B [Bacteroides fragilis 3_1_12]
          Length = 623

 Score =  398 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 188/663 (28%), Positives = 297/663 (44%), Gaps = 76/663 (11%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            Y   +IR L  +E VR RPGMYIG        E  ++ L  EVIDN++DE        I
Sbjct: 15  EYTDDNIRHLSDMEHVRTRPGMYIGKLGDGSHPEDGIYVLLKEVIDNSIDEFKMQSGKKI 74

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           E+ ++ N  ++V D GRGIP            +E + + L+ GGK+D+  ++ S GL+GV
Sbjct: 75  EIRIEENLRVSVRDYGRGIPQGK--------LVEAV-SVLNTGGKYDSKAFKKSVGLNGV 125

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+  VNALS    V   R   +    F++G  ++     E    + GT I F PD  +F 
Sbjct: 126 GVKAVNALSSNFEVRSYRDGKVRCATFTKGELITDHT--EDTEEENGTYIFFEPDNTLFL 183

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    +  M ++  YL+  +   ++  +                  GL   L   +
Sbjct: 184 NY-TFRPEFIETMLRNYTYLNTGLAIIYNGQRI-------------LSRNGLVDLLNDNM 229

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
               L       G+          +E A     +   E  S+ N   T +GGTH+S  + 
Sbjct: 230 TATGLYPIVHLKGE---------DIEIAFTHTGQYGEEYYSFVNGQHTTQGGTHQSAFKE 280

Query: 337 ALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR-- 394
            + R IK++          +    D+    V  ++V + EP F  QTK KL S +     
Sbjct: 281 HIARTIKEFYN-------KNQDYTDIRNGLVAAIAVNVEEPMFESQTKIKLGSTNMSPGG 333

Query: 395 -----TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
                 V + ++   D++L ++   A  +L+ + +  +ER       ++ R+ A +    
Sbjct: 334 VTVNKFVGDFVKQEVDNFLHKHADVAEIMLQKIQDSEKERKAIAGVTKLARERAKKANLH 393

Query: 450 PGKLADCSQNIAH--------GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             KL DC  ++           + +FI EGDSA GS  ++R+ + QAV  LRGK LN   
Sbjct: 394 NRKLRDCRIHLNDVKGKGLEEESCIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSFG 453

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
              + +  N++   L  AL          E LRY KVI+ TDADVDG HI  LL+TFF Q
Sbjct: 454 LTKKVVYENEEFNLLQAALNIE----DGIEGLRYNKVIVATDADVDGMHIRLLLITFFLQ 509

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
              DLI++ H++++  PLFR+    K++Y + EE +   ++E   +     EI+RFKGLG
Sbjct: 510 FFPDLIKKGHVYILQTPLFRVRNKKKTLYCYTEEERVNAIKELSPN----PEITRFKGLG 565

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           E+   + K          L +V + K        ++ +   MG    ER  FI +     
Sbjct: 566 EISPDEFKHFIG--KDMRLEQVSLRK----TDTVKELLEFYMGKNTMERQNFIIDNLVIE 619

Query: 682 DDV 684
           +D+
Sbjct: 620 EDI 622


>gi|326427380|gb|EGD72950.1| DNA topoisomerase II [Salpingoeca sp. ATCC 50818]
          Length = 1795

 Score =  398 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 141/707 (19%), Positives = 272/707 (38%), Gaps = 80/707 (11%)

Query: 15  QSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE--- 71
           +++ SS    ++ +     A A ++  + Y          LE + +RP  YIG  +    
Sbjct: 41  KARNSSSSTTQAMKKSKKGADAGKTVEEIYQKK-----TQLEHILLRPDTYIGSVESNTK 95

Query: 72  -------------------KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDG-NGFLTVV 110
                                L+ +F E+I NA D  I     + I+V++D     ++V 
Sbjct: 96  NLFVVDPEAGFVQREITYVPGLYKIFDEIIVNAADNKIRDPTMDCIKVTIDKAKAEISVY 155

Query: 111 DNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELH 170
           + G+GIPV+ H K       E+I   L     +D++  +++GG +G G  + N  S +  
Sbjct: 156 NTGKGIPVQVHAK-EGVYVPELIFGHLLTSSNYDDNQKKVTGGRNGYGAKLCNIFSTKFV 214

Query: 171 VTVARQN--TIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDK--AGFDA 224
           V          + Q F   + +       K +  +K  TRITFRPD   F          
Sbjct: 215 VETCDTETGKKYRQVFRDNMAIKEDPVIVKTKSSDKDFTRITFRPDLSKFHMSELDDDII 274

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
           A + +     A  +  +K   + ++     +              K Y+   L ++++ +
Sbjct: 275 ALMARRVYDVAGTTRGIKVYLNNERLPVRHF--------------KDYVNLVLRDQNVDT 320

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKK 344
             +               E  +   E   +  S+ N+I T +GGTH + +   +  G+  
Sbjct: 321 KVVH-------EVVNDRWEVCMTLSENGFQQMSFVNSIATTKGGTHVNYVADQIVSGL-- 371

Query: 345 YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF 404
            + + +  +  ++    +       ++  I  P F  QTK  +            L D F
Sbjct: 372 LSTIKRKNKGAAVKPHQVKNHMWLFINCLIENPSFDSQTKENMTRRSKDFGSNPVLSDKF 431

Query: 405 DHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP--GKLADCSQNIAH 462
                   I+ T +++ V+  ++ + + +  +  +     +   +P      +     + 
Sbjct: 432 LK-----NIKDTGIVDAVLNWAKLKSQAQLSKASSGSKKCKISGIPKLDDANEAGGRNSS 486

Query: 463 GTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
              L + EGDSA   A        R    V PLRGK+LNV  A  ++I +N ++ ++ + 
Sbjct: 487 KCTLILTEGDSAKALAVSGLGVLGRDYYGVFPLRGKLLNVREASHKQIMDNAEVKNIAKI 546

Query: 520 LGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK-HLFLISP 577
           +G +   +Y     LRY +++IMTD D DG+HI  LL+ F +     L++    L     
Sbjct: 547 MGLKFGHEYTTTKQLRYGRLMIMTDQDQDGSHIKGLLINFIHHFWPSLLKMPDFLVEFVT 606

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           P+ + T+G + V        +   E+          I  +KGLG     + KE     + 
Sbjct: 607 PIVKCTKGKQEVSFFTIPQYETWAEQQG--NLKGWRIKYYKGLGTSTPQEAKEYFSHMDD 664

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE--RASFID 682
              +      D    +D   + +K      + R ++++     +++D
Sbjct: 665 HQ-IPFSYEGD-KDFEDIVMAFSK---KHVEARKQWLKNFVPGTYLD 706


>gi|154795733|gb|ABS86854.1| gyrase B [Mycobacterium avium subsp. paratuberculosis]
          Length = 542

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 197/550 (35%), Positives = 288/550 (52%), Gaps = 39/550 (7%)

Query: 56  EPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRG 115
           E VR RPGMYIG T E+ LHHL  EV+DN++DE +AGYA+ ++V +  +G + V DNGRG
Sbjct: 1   EAVRKRPGMYIGSTGERGLHHLIWEVVDNSVDEAMAGYADRVDVRILDDGSVEVADNGRG 60

Query: 116 IPVENHPKFPNKSTLEIILTTLHAGGKF--DNSTYEISGGLHGVGISVVNALSDELHVTV 173
           IPV  H       T+++++T LHAGGKF  +NS Y +SGGLHGVG+SVVNALS  L V +
Sbjct: 61  IPVAIH--ATGAPTVDVVMTQLHAGGKFGGENSGYNVSGGLHGVGVSVVNALSTRLEVNI 118

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
           AR    +SQ +   +P +   K+ +V  + GT I F  DP IF     +D   + +  Q 
Sbjct: 119 ARDGYEWSQYYDHAVPGTL--KQGEVTKRTGTTIRFWADPDIFET-TEYDFETVARRLQE 175

Query: 234 KAYLSGRVKTCWSCDKEIAEK-------------------------YGIPEKEEFYFPGG 268
            A+L+  +    + ++   E+                             +   F++PGG
Sbjct: 176 MAFLNKGLTINLTDERVTNEEVVDEVVSDTADAPKSAQEKAAESAAPHKVKHRTFHYPGG 235

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           L  +++     ++ I   I     +  G     VE A+ W       + ++ NTI T EG
Sbjct: 236 LVDFVKHINRTKNPIHQSIIDFGGKGPGH---EVEIAMQWNGGYSESVHTFANTINTHEG 292

Query: 328 GTHE--SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTHE                                       ++SV + EP+F GQTKT
Sbjct: 293 GTHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREGLAAVISVKVSEPQFEGQTKT 352

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444
           KL + + +  V+    +   H+   NP +A  ++   +  ++ R+  RK RE V RK+A 
Sbjct: 353 KLGNTEVKSFVQKVCNEQLTHWFEANPADAKVIVNKAVSSAQARIAARKARELVRRKSAT 412

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC       +EL++VEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  
Sbjct: 413 DLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARI 472

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           +++  N ++  ++ ALG     ++    LRY K+++M DADVDG HI++LLLT  ++ M 
Sbjct: 473 DRVLKNTEVQAIITALGTGIHDEFDITKLRYHKIVLMADADVDGQHISTLLLTLLFRFMR 532

Query: 565 DLIEQKHLFL 574
            LIE  H+FL
Sbjct: 533 PLIEHGHVFL 542


>gi|153803593|ref|ZP_01958179.1| DNA topoisomerase IV, B subunit [Vibrio cholerae MZO-3]
 gi|124120868|gb|EAY39611.1| DNA topoisomerase IV, B subunit [Vibrio cholerae MZO-3]
          Length = 519

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 205/534 (38%), Positives = 294/534 (55%), Gaps = 18/534 (3%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MY   TD    +HL  EVIDN++DE +AGYA+ I+V L  +  L V+D+GRG+PV+ HP+
Sbjct: 1   MY---TDTTRPNHLGQEVIDNSVDEALAGYASKIQVILHADQSLEVIDDGRGMPVDIHPE 57

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
               S +E+IL  LHAGGKF N  Y+ SGGLHGVGISVVNALS  + V V R   ++   
Sbjct: 58  -EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVAVRRDGQVYEIA 116

Query: 184 FSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
           F  G  ++ L       R   GT + F PD K F     F  +RL+   ++KA L   ++
Sbjct: 117 FEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSPN-FSVSRLINNLRAKAVLCPGLE 175

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
             ++      E         + +  GLK YL   ++  +L+  E FTG+   + T   T 
Sbjct: 176 IIFTDKVNNNE-------HRWLYEDGLKDYLAEGVKGYTLLPEEPFTGEFTAQ-TEAATW 227

Query: 303 EWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDD 361
                         SY N I T +GGTH +GLR  L   ++++ E      R + +  +D
Sbjct: 228 AVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNLLPRGVKLTGED 287

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
           +      +LS+ +++P+FAGQTK +L S  +   V   ++D F  +L + P  A +L E 
Sbjct: 288 VFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAFSLWLNEKPQLAEQLAEV 347

Query: 422 VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
            I  +  R+R    ++V RK       LPGKL DC+    + TELF+VEGDSAGGSAKQA
Sbjct: 348 CIANAHSRMR--ASKKVVRKKIASGPALPGKLTDCTVQDLNRTELFLVEGDSAGGSAKQA 405

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541
           R+R  QAV+PLRGKILN     ++++  +Q++ D+  ALG    S    E LRY KV I+
Sbjct: 406 RDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVALGIDPDSD-NLEALRYGKVCIL 464

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEE 595
            DAD DG HIA+LL   F +    L++  H+++  PPL+RI  G +  YA D++
Sbjct: 465 ADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRIDCGKEVFYALDDQ 518


>gi|71018835|ref|XP_759648.1| hypothetical protein UM03501.1 [Ustilago maydis 521]
 gi|46099406|gb|EAK84639.1| hypothetical protein UM03501.1 [Ustilago maydis 521]
          Length = 1518

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 157/723 (21%), Positives = 273/723 (37%), Gaps = 77/723 (10%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           M D   D+ S  PP    S+                ++SAS+ Y     + L  LE +  
Sbjct: 73  MVDSEADV-SFQPPVPVKSA---------------NSKSASETY-----QKLSQLEHILK 111

Query: 61  RPGMYIGGTD-----------------------EKALHHLFSEVIDNAMDEVIAG-YANL 96
           RP  YIG  +                          L+ +F E++ NA D          
Sbjct: 112 RPDTYIGSVEKHTEKLWVFDKSKKQMVYRETTYVPGLYKIFDEILVNAADNKARDSNMTA 171

Query: 97  IEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
           ++V ++   G + V +NG GIPVE H K       E+I   L     +D++  +++GG +
Sbjct: 172 LKVEINREEGSIMVWNNGHGIPVEMHEK-ERVYIPELIFGHLLTSSNYDDNEAKVTGGRN 230

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQK--FSRGIPLSPLEKKEK-VRNKRGTRITFRPD 212
           G G  + N  S E  V  A        K  F++ +      K  K  +N   T ITF+PD
Sbjct: 231 GYGAKLANIYSTEFTVETADSKNQCKYKQTFTKNMHEKGKPKITKHSKNDEYTSITFKPD 290

Query: 213 PKIFGDK--AGFDAARLLKMTQSKAYLSGRVKTCWSCD---KEIAEKYGIPEKEEFYFPG 267
             +FG         A +LK     A     +K   + +    +  ++Y           G
Sbjct: 291 LALFGMDAIDDHMEALMLKRVYDMAGTVKGIKVTLNGELLKIKNFKQYVEMYVSAINELG 350

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEG 327
           G     +         ++       E         E A A  +      S+ N I T +G
Sbjct: 351 GKADNGEEDAAGLPTSAAPKPAIIYESTVDKGRNWEVAFAVSDGEFRQVSFVNNIATIKG 410

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           G H   +   +   + ++    ++K    ++ + +       ++  I  P F GQTK  L
Sbjct: 411 GKHVDHVADQVISRLIEHV--KKDKHTGKVMPNQVRQQLWVFVNCQIVNPTFDGQTKETL 468

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL 447
               +    +  L D F   +++     + +++ ++  +  +  +  ++    K      
Sbjct: 469 TLKQSAFGSKWTLTDEFARKVIK-----SGVVDNIVSFARFKQDQALKKTDGHKRTRITN 523

Query: 448 RLPGKLADCS-QNIAHGTELFIVEGDSAGG---SAKQARNRSNQAVLPLRGKILNVASAG 503
               + A+ +    A    L + EGDSA     +      R N  V PLRGK+LNV  A 
Sbjct: 524 IPKLEDANNAGGRKAKDCTLILTEGDSAKSLAVAGIVEVGRDNYGVFPLRGKLLNVREAS 583

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
            ++I  N +I  + + LG +   QY + + LRY  ++IMTD D DG+HI  L++ F    
Sbjct: 584 HDQIMKNAEIKAIKEILGLQHGKQYLDTNSLRYGSIMIMTDQDHDGSHIKGLIINFLDHF 643

Query: 563 MYDLIEQ-KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
              L++    L     P+ R  +G + +        +   +    +G     I  +KGLG
Sbjct: 644 YPSLLKIPGFLVEFITPIVRCRKGKQDISFFTIPEYETWRDAH--NGGKGWHIKYYKGLG 701

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE--RAS 679
              +   K       K  L            +    + NK    KAD+R +++++    +
Sbjct: 702 TSESQDAKRYFRALEKHKLAFDVTRDG--DRELIDLAFNK---KKADDRKEWLRQFRPGT 756

Query: 680 FID 682
           ++D
Sbjct: 757 YLD 759


>gi|253564645|ref|ZP_04842102.1| DNA topoisomerase IV subunit B [Bacteroides sp. 3_2_5]
 gi|251948421|gb|EES88703.1| DNA topoisomerase IV subunit B [Bacteroides sp. 3_2_5]
 gi|301165330|emb|CBW24902.1| putative topoisomerase IV subunit B [Bacteroides fragilis 638R]
          Length = 623

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 185/663 (27%), Positives = 294/663 (44%), Gaps = 76/663 (11%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            Y   +IR L  +E VR RPGMYIG        E  ++ L  EVIDN++DE        I
Sbjct: 15  EYTDDNIRHLSDMEHVRTRPGMYIGKLGDGSHPEDGIYVLLKEVIDNSIDEFKMQSGKKI 74

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           E+ ++ N  ++V D GRGIP     +          ++ L+ GGK+D+  ++ S GL+GV
Sbjct: 75  EIRVEENLRVSVRDYGRGIPQGKLIE---------AVSVLNTGGKYDSKAFKKSVGLNGV 125

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+  VNALS    V   R   +    F++G  ++     E    + GT I F PD +   
Sbjct: 126 GVKAVNALSSNFEVRSYRDGKVRCATFTKGELVTDHT--EDTEEENGTYIFFEPD-ETLF 182

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F    +  M ++  YL+  +   ++  +                  GL   L   +
Sbjct: 183 LNYSFRPEFIETMLRNYTYLNTGLAIIYNGQRI-------------LSRNGLVDLLNDNM 229

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
               L       G+          +E A     +   E  S+ N   T +GGTH+S  + 
Sbjct: 230 TATGLYPIVHLKGE---------DIEIAFTHTGQYGEEYYSFVNGQHTTQGGTHQSAFKE 280

Query: 337 ALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR-- 394
            + R IK++          +    D+    V  ++V + EP F  QTK KL S +     
Sbjct: 281 HIARTIKEFYN-------KNQDYTDIRNGLVAAIAVNVEEPMFESQTKIKLGSTNMSPGG 333

Query: 395 -----TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
                 V + ++   D++L ++   A  +L+ + +  +ER       ++ R+ A +    
Sbjct: 334 ITVNKFVGDFIKQEVDNFLHKHADIAEIMLQKIQDSEKERKAIAGVTKLARERAKKANLH 393

Query: 450 PGKLADCSQNIAH--------GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             KL DC  ++           + +FI EGDSA GS  ++R+ + QAV  LRGK LN   
Sbjct: 394 NRKLRDCRVHLNDVKGKGLEEESCIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSFG 453

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
              + +  N++   L  AL          E LRY KVI+ TDADVDG HI  LL+TFF Q
Sbjct: 454 LTKKVVYENEEFNLLQAALNIE----DGIEGLRYNKVIVATDADVDGMHIRLLLITFFLQ 509

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
              DLI++ H++++  PLFR+    K++Y + EE +   ++E   +     EI+RFKGLG
Sbjct: 510 FFPDLIKKGHVYILQTPLFRVRNKKKTLYCYTEEERVNAIKELSPN----PEITRFKGLG 565

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           E+   + +          L +V + K        ++ +   MG    ER  FI +     
Sbjct: 566 EISPDEFRHFIG--KDMRLEQVSLRK----TDTVKELLEFYMGKNTMERQNFIIDNLVIE 619

Query: 682 DDV 684
           +D+
Sbjct: 620 EDI 622


>gi|53715824|ref|YP_101816.1| DNA topoisomerase IV subunit B [Bacteroides fragilis YCH46]
 gi|60683745|ref|YP_213889.1| DNA topoisomerase IV subunit B [Bacteroides fragilis NCTC 9343]
 gi|265764692|ref|ZP_06092967.1| DNA topoisomerase IV, B subunit [Bacteroides sp. 2_1_16]
 gi|52218689|dbj|BAD51282.1| DNA topoisomerase IV subunit B [Bacteroides fragilis YCH46]
 gi|60495179|emb|CAH10000.1| putative topoisomerase IV subunit B [Bacteroides fragilis NCTC
           9343]
 gi|263254076|gb|EEZ25510.1| DNA topoisomerase IV, B subunit [Bacteroides sp. 2_1_16]
          Length = 623

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 185/663 (27%), Positives = 294/663 (44%), Gaps = 76/663 (11%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            Y   +IR L  +E VR RPGMYIG        E  ++ L  EVIDN++DE        I
Sbjct: 15  EYTDDNIRHLSDMEHVRTRPGMYIGKLGDGSHPEDGIYVLLKEVIDNSIDEFKMQSGKKI 74

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           E+ ++ N  ++V D GRGIP     +          ++ L+ GGK+D+  ++ S GL+GV
Sbjct: 75  EIRVEENLRVSVRDYGRGIPQGKLIE---------AVSVLNTGGKYDSKAFKKSVGLNGV 125

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+  VNALS    V   R   +    F++G  ++     E    + GT I F PD +   
Sbjct: 126 GVKAVNALSSNFEVRSYRDGKVRCATFTKGELVTDHT--EDTEEENGTYIFFEPD-ETLF 182

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F    +  M ++  YL+  +   ++  +                  GL   L   +
Sbjct: 183 LNYSFRPEFIETMLRNYTYLNTGLAIIYNGQRI-------------LSRNGLVDLLNDNM 229

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
               L       G+          +E A     +   E  S+ N   T +GGTH+S  + 
Sbjct: 230 TATGLYPIVHLKGE---------DIEIAFTHTGQYGEEYYSFVNGQHTTQGGTHQSAFKE 280

Query: 337 ALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR-- 394
            + R IK++          +    D+    V  ++V + EP F  QTK KL S +     
Sbjct: 281 HIARTIKEFYN-------KNQDYTDIRNGLVAAIAVNVEEPMFESQTKIKLGSTNMSPGG 333

Query: 395 -----TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
                 V + ++   D++L ++   A  +L+ + +  +ER       ++ R+ A +    
Sbjct: 334 ITVNKFVGDFIKQEVDNFLHKHADVAEIMLQKIQDSEKERKAIAGVTKLARERAKKANLH 393

Query: 450 PGKLADCSQNIAH--------GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             KL DC  ++           + +FI EGDSA GS  ++R+ + QAV  LRGK LN   
Sbjct: 394 NRKLRDCRVHLNDVKGKGLEEESCIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSFG 453

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
              + +  N++   L  AL          E LRY KVI+ TDADVDG HI  LL+TFF Q
Sbjct: 454 LTKKVVYENEEFNLLQAALNIE----DGIEGLRYNKVIVATDADVDGMHIRLLLITFFLQ 509

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
              DLI++ H++++  PLFR+    K++Y + EE +   ++E   +     EI+RFKGLG
Sbjct: 510 FFPDLIKKGHVYILQTPLFRVRNKKKTLYCYTEEERVNAIKELSPN----PEITRFKGLG 565

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           E+   + +          L +V + K        ++ +   MG    ER  FI +     
Sbjct: 566 EISPDEFRHFIG--KDMRLEQVSLRK----TDTVKELLEFYMGKNTMERQNFIIDNLVIE 619

Query: 682 DDV 684
           +D+
Sbjct: 620 EDI 622


>gi|255036527|ref|YP_003087148.1| DNA topoisomerase IV subunit B [Dyadobacter fermentans DSM 18053]
 gi|254949283|gb|ACT93983.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Dyadobacter fermentans DSM 18053]
          Length = 623

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 188/665 (28%), Positives = 304/665 (45%), Gaps = 76/665 (11%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            YD SSIR L+  E +R+RPGMYIG      + +  ++ L  EV+DN++DE + G    I
Sbjct: 7   QYDESSIRSLDWKEHIRLRPGMYIGKLGDGSSVDDGIYVLVKEVVDNSIDEHMMGNGKTI 66

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           E+ +     + V D GRGIP+           +   ++ ++ GGK+D+  ++ S GL+GV
Sbjct: 67  EIKI-SEHRVEVRDYGRGIPLGK---------VVDCVSKINTGGKYDSGAFQKSVGLNGV 116

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G   VNALS    V   R     S +F++G  L+   +      + GT + F PD  IF 
Sbjct: 117 GTKAVNALSSHFKVQSYRDGKTKSAEFNQGALLNESPE-GTTSQRNGTHVAFEPDGTIFK 175

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   +    L  M  +  YL+  +   ++  K             ++   GL   L++K 
Sbjct: 176 NFR-YIPQYLDNMIWNYCYLNAGLTINFNGQK-------------YFSQNGLLDLLKSKS 221

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           +  +L    I              +E A+    +   E  S+ N   T +GGTH +  R 
Sbjct: 222 DAETLRYPIIHL--------KGEDIELAMTHGNQYGEEYYSFVNGQYTTQGGTHLAAFRE 273

Query: 337 ALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK---------L 387
           A+ + ++++              +D+  S +G +++ ++EP F  QTKTK          
Sbjct: 274 AVVKAVREHFG-------KDYAPEDIRSSIIGAIAIRVQEPVFESQTKTKLGSNTITPDP 326

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL 447
            S   +  V + +++  D++L  NP     L + + +   ER      +++    A +  
Sbjct: 327 NSTTVRTFVNDFVKERLDNFLHMNPESRDALKKRIEQSERERKELAGIKKLANDRAKKAN 386

Query: 448 RLPGKLADCSQN-------IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
               KL DC  +         + T LFI EGDSA GS  ++R+   QAV  LRGK LN  
Sbjct: 387 LHNKKLRDCRVHLTDLKSDNRYETTLFITEGDSASGSITKSRDIQTQAVFSLRGKPLNSF 446

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
               + +  N++   L  AL          E+LR+ ++II TDADVDG HI  LL+TFF 
Sbjct: 447 GLTKKIVYENEEFNLLQHALDVENGV----ENLRFNRIIIATDADVDGMHIRLLLMTFFL 502

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           Q   DL+   HLF++  PLFR+    +++Y + EE KQ  +++       K EI+RFKGL
Sbjct: 503 QFFPDLVRNGHLFVLETPLFRVRNKKETIYCYSEEEKQAAIDKLGN----KPEITRFKGL 558

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GE+   +  +         +  V + K+       Q  ++  MG    ER +FI +    
Sbjct: 559 GEISPEEFGKFIG--EDMRVEPVILQKET----SIQKLLSYFMGKNTPERQRFIIDNLKV 612

Query: 681 IDDVG 685
             +V 
Sbjct: 613 EKNVD 617


>gi|29348442|ref|NP_811945.1| DNA topoisomerase IV subunit B [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253569193|ref|ZP_04846603.1| DNA topoisomerase IV subunit B [Bacteroides sp. 1_1_6]
 gi|298385854|ref|ZP_06995411.1| DNA gyrase, B subunit [Bacteroides sp. 1_1_14]
 gi|29340346|gb|AAO78139.1| DNA topoisomerase IV subunit B [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251841212|gb|EES69293.1| DNA topoisomerase IV subunit B [Bacteroides sp. 1_1_6]
 gi|298261082|gb|EFI03949.1| DNA gyrase, B subunit [Bacteroides sp. 1_1_14]
          Length = 625

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 190/665 (28%), Positives = 298/665 (44%), Gaps = 76/665 (11%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTD-----EKALHHLFSEVIDNAMDEVIAGYANLI 97
            Y   +IR L  +E VR RPGMYIG        E  ++ L  EVIDN++DE        I
Sbjct: 16  EYTDDNIRHLSDMEHVRTRPGMYIGRLGDGAHAEDGIYVLLKEVIDNSIDEFKMQAGKKI 75

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           E++++ N  ++V D GRGIP            +E + + L+ GGK+D+  ++ S GL+GV
Sbjct: 76  EITVEENLRVSVRDYGRGIPQGK--------LVEAV-SVLNTGGKYDSKAFKKSVGLNGV 126

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+  VNALS    V   R   +    FS+G   + + +        GT I F PD  +F 
Sbjct: 127 GVKAVNALSSRFEVRSYRDGKVRIATFSKGNLQTDVTQ--DTEEDNGTFIFFEPDNTLFV 184

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    +  M ++  YL+  +   ++  +                  GL   L   +
Sbjct: 185 NYC-FKPEFIETMLRNYTYLNTGLAIIYNGHRI-------------LSRNGLVDLLNDNM 230

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
               L       G+          +E A     +   E  S+ N   T +GGTH+S  + 
Sbjct: 231 TATGLYPIVHLKGE---------DIEIAFTHTGQYGEEYYSFVNGQHTTQGGTHQSAFKE 281

Query: 337 ALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA---- 392
            + R IK++          ++   D+    V  ++V + EP F  QTKTKL S +     
Sbjct: 282 HIARTIKEFFN-------KNMDYTDIRNGLVAAIAVNVEEPIFESQTKTKLGSTNMTPGG 334

Query: 393 ---QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
               + V + ++   D++L +N   A  + + + E  +ER       ++ R+ A +    
Sbjct: 335 VTVNKYVGDFIKLEVDNFLHKNADVAEVMQQKIQESEKERKAIAGVTKLARERAKKANLH 394

Query: 450 PGKLADCSQNIAHGT--------ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             KL DC  ++             +FI EGDSA GS  ++R+ + QAV  LRGK LN   
Sbjct: 395 NRKLRDCRIHLNDPKGKGMEEDSCIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSFG 454

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
              + +  N++   L  AL          E LRY KVI+ TDADVDG HI  LL+TFF Q
Sbjct: 455 LTKKVVYENEEFNLLQAALNIE----DGIEGLRYNKVIVATDADVDGMHIRLLLITFFLQ 510

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
              DLI++ H++++  PLFR+    K+VY + E+ +   + E   +     EI+RFKGLG
Sbjct: 511 FFPDLIKKGHVYILQTPLFRVRNKKKTVYCYSEDERVNAINELSPN----PEITRFKGLG 566

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           E+   + K          L +V + K        ++ +   MG    ER  FI +     
Sbjct: 567 EISPDEFKHFIG--KDMRLEQVTLRK----TDAVKELLEFYMGKNTMERQNFIIDNLVIE 620

Query: 682 DDVGT 686
           +D+ +
Sbjct: 621 EDLAS 625


>gi|51246132|ref|YP_066016.1| DNA topoisomerase IV subunit B [Desulfotalea psychrophila LSv54]
 gi|50877169|emb|CAG37009.1| probable topoisomerase IV, subunit B [Desulfotalea psychrophila
           LSv54]
          Length = 613

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 189/656 (28%), Positives = 310/656 (47%), Gaps = 67/656 (10%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAG 92
            S   NYD S I+ L  LE +R RPGMYIG        +  ++ L  EV+DNA+DE I G
Sbjct: 2   TSTPSNYDESKIKTLSSLEHIRKRPGMYIGRLGNGSHQDDGIYILLKEVVDNAVDEFIMG 61

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
               I+V++   G + V D GRGIP+           L   ++ ++ G K++   ++ S 
Sbjct: 62  AGKKIDVAVSEEGRVRVRDYGRGIPLGK---------LVDCVSVINTGAKYNTDVFQFSV 112

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GL+GVG   VNALSDE  VT  R     S  FS+G      +++ +   K GT I F P 
Sbjct: 113 GLNGVGTKAVNALSDEFTVTAYRDGKYASATFSQGKLQ--HKEEGESEEKNGTLINFLPS 170

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
             +F +   +D+  + +     AYL+  +K  ++             K  FY   GL+  
Sbjct: 171 RDMFPEF-SYDSDFVSRRMWRYAYLNAGLKLYFN-------------KSLFYSKEGLRDL 216

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           L  +L + +L     +  +T         +E+A A  +       ++ N   T EGGTH 
Sbjct: 217 LAKELSDSNLYEPIYYKDET---------LEFAFAHTDSFNDSYYTFVNGTYTSEGGTHL 267

Query: 332 SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           S  R  + +G+ +++     K+ ++    D+    VG L+V ++EP F  QTK KL + +
Sbjct: 268 SAFREGVLKGVNEFSG----KKFVNT---DVRDGIVGTLAVKVKEPVFESQTKNKLGNTE 320

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
            +  + N +R+     L ++   A  LL+ +    + R   +  R+  +  A +      
Sbjct: 321 VRSWIVNKVREAVSSELYKHSDTAEILLDKIQRNEKVRKELQSVRKEAKARAKKVSLKIP 380

Query: 452 KLADCSQNIAHG--------TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +L DC  + A            +FI EG SA GS   +R+   QAV  ++GK LNV    
Sbjct: 381 QLKDCKYHPAKNAPSAAGRENMVFITEGQSAAGSIVSSRDPLIQAVFSMKGKPLNVLGHQ 440

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
              +  N+++  L++ L           DLR++KVI+ TDADVDG HI +LLLTFF    
Sbjct: 441 LATLYKNEEMYALMRTLNIEHS----ISDLRFDKVIMATDADVDGLHIRNLLLTFFLHYF 496

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKI--LEEFKKHGKGKIEISRFKGLG 621
             L++  H++++  P+FR+    +++Y + E+ K         +   K  +E++RFKGLG
Sbjct: 497 EPLVKLGHVYILETPIFRVRNKAETIYCYSEKEKNAAQKKLGGQGKKKLNVEMTRFKGLG 556

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           E+   + K+   D     L  V ++    S+ +    ++  MG    ER ++I + 
Sbjct: 557 EISPKEFKQFIGD--DIRLKSVTLD----SISEVAKVLSFYMGKNTPERKQYIMDN 606


>gi|153807001|ref|ZP_01959669.1| hypothetical protein BACCAC_01278 [Bacteroides caccae ATCC 43185]
 gi|149130121|gb|EDM21331.1| hypothetical protein BACCAC_01278 [Bacteroides caccae ATCC 43185]
          Length = 625

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 190/673 (28%), Positives = 299/673 (44%), Gaps = 76/673 (11%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----EKALHHLFSEVIDNAMDEV 89
             + + +  Y   +IR L  +E VR RPGMYIG        E  ++ L  EVIDN++DE 
Sbjct: 8   PVDNNNAVEYTDDNIRHLSDMEHVRTRPGMYIGRLGDGAHAEDGIYVLLKEVIDNSIDEF 67

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
                  IE++++ N  ++V D GRGIP     +          ++ L+ GGK+D+  ++
Sbjct: 68  KMQAGKKIEITVEENLRVSVRDYGRGIPQGKLIE---------AVSMLNTGGKYDSKAFK 118

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
            S GL+GVG+  VNALS    V   R   +    FS+G  L+   +        GT I F
Sbjct: 119 KSVGLNGVGVKAVNALSSRFEVRSYRDGKVRIATFSKGTLLTDETQ--TTEEDNGTYIFF 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD  +F +   F    +  M ++  YL+  +   ++  +                  GL
Sbjct: 177 EPDNTLFLNYC-FKPEFIETMLRNYTYLNTGLAIIYNGHRI-------------LSRNGL 222

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
              L   +    L       G+          +E A     +   E  S+ N   T +GG
Sbjct: 223 VDLLNDNMTATGLYPIIHLKGE---------DIEIAFTHTGQYGEEYYSFVNGQHTTQGG 273

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           TH+S  +  + R IK++          ++   D+    V  ++V + EP F  QTKTKL 
Sbjct: 274 THQSAFKEHIARTIKEFFN-------KNMDYTDIRNGLVAAIAVNVEEPIFESQTKTKLG 326

Query: 389 SLDAQR-------TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           S +           V + ++   D++L +N   A  + + + E  +ER       ++ R+
Sbjct: 327 STNMAPGGMTVNKYVGDFIKLEVDNFLHKNADVAEAIQQKIQESEKERKAIAGVTKLARE 386

Query: 442 TAIRKLRLPGKLADCSQNIAHGT--------ELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            A +      KL DC  ++             +FI EGDSA GS  ++R+ + QAV  LR
Sbjct: 387 RAKKANLHNRKLRDCRIHLNDPKGKGLEEDSCIFITEGDSASGSITKSRDVNTQAVFSLR 446

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIAS 553
           GK LN      + +  N++   L  AL          E LRY KVI+ TDADVDG HI  
Sbjct: 447 GKPLNSFGLTKKVVYENEEFNLLQAALNIE----DGIEGLRYNKVIVATDADVDGMHIRL 502

Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613
           LL+TFF Q   DLI++ H++++  PLFR+    K++Y + EE +   + E   +     E
Sbjct: 503 LLITFFLQFFPDLIKKGHVYILQTPLFRVRNKKKTLYCYSEEERVNAINELSPN----PE 558

Query: 614 ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKF 673
           I+RFKGLGE+   + K          L +V + K        ++ +   MG    ER  F
Sbjct: 559 ITRFKGLGEISPDEFKHFIG--KDMRLEQVTLRK----TDAVKELLEFYMGKNTMERQNF 612

Query: 674 IQERASFIDDVGT 686
           I +     +D+ +
Sbjct: 613 IIDNLVIEEDLAS 625


>gi|298479894|ref|ZP_06998093.1| DNA gyrase, B subunit [Bacteroides sp. D22]
 gi|299144912|ref|ZP_07037980.1| DNA gyrase, B subunit [Bacteroides sp. 3_1_23]
 gi|295085680|emb|CBK67203.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Bacteroides xylanisolvens XB1A]
 gi|298273703|gb|EFI15265.1| DNA gyrase, B subunit [Bacteroides sp. D22]
 gi|298515403|gb|EFI39284.1| DNA gyrase, B subunit [Bacteroides sp. 3_1_23]
          Length = 625

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 191/673 (28%), Positives = 300/673 (44%), Gaps = 76/673 (11%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----EKALHHLFSEVIDNAMDEV 89
             + + +  Y   +IR L  +E VR RPGMYIG        E  ++ L  EVIDN++DE 
Sbjct: 8   PVDNNNAVEYTDDNIRHLSDMEHVRTRPGMYIGRLGDGAHAEDGIYVLLKEVIDNSIDEF 67

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
                  IE++++ N  ++V D GRGIP     +          ++ L+ GGK+D+  ++
Sbjct: 68  KMQAGKKIEITVEENLRVSVRDYGRGIPQGKLIE---------AVSMLNTGGKYDSKAFK 118

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
            S GL+GVG+  VNALS    V   R   +    FS+G  L+   K      + GT I F
Sbjct: 119 KSVGLNGVGVKAVNALSSRFEVRSYRDGKVRIATFSKGNLLTDETKN--TEEENGTYIFF 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD  +F +   F    +  M ++  YL+  +   ++  +                  GL
Sbjct: 177 EPDNTLFLNYC-FKPEFIETMLRNYTYLNTGLAIIYNGHRI-------------LSRNGL 222

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
              L   +    L       G+          +E A     +   E  S+ N   T +GG
Sbjct: 223 VDLLNDNMTATGLYPIIHLKGE---------DIEIAFTHTGQYGEEYYSFVNGQHTTQGG 273

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           TH+S  +  + R IK++          ++   D+    V  ++V + EP F  QTKTKL 
Sbjct: 274 THQSAFKEHIARTIKEFFN-------KNMDYTDIRNGLVAAIAVNVEEPIFESQTKTKLG 326

Query: 389 SLDA-------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           S +         + V + ++   D++L +N   A  + + + E  +ER       ++ R+
Sbjct: 327 STNMVPGGVTVNKYVGDFIKQEVDNFLHKNADIAEAIQQKIQESEKERKAIAGVTKLARE 386

Query: 442 TAIRKLRLPGKLADCSQNIAHGT--------ELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            A +      KL DC  ++             +FI EGDSA GS  ++R+ + QAV  LR
Sbjct: 387 RAKKANLHNRKLRDCRIHLNDPKGKGLEEDSCIFITEGDSASGSITKSRDVNTQAVFSLR 446

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIAS 553
           GK LN      + +  N++   L  AL          E LRY KVI+ TDADVDG HI  
Sbjct: 447 GKPLNSFGLTKKVVYENEEFNLLQAALNIE----DGIEGLRYNKVIVATDADVDGMHIRL 502

Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613
           LL+TFF Q   DLI++ H++++  PLFR+    K+ Y + EE +   + E   +     E
Sbjct: 503 LLITFFLQFFPDLIKKGHVYILQTPLFRVRNKKKTNYCYSEEERINAINELGPN----PE 558

Query: 614 ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKF 673
           I+RFKGLGE+   + K          L +V + K        ++ +   MG    ER  F
Sbjct: 559 ITRFKGLGEISPDEFKHFIG--KDMRLEQVTLRK----TDAVKELLEFYMGKNTMERQNF 612

Query: 674 IQERASFIDDVGT 686
           I +     +D+ +
Sbjct: 613 IIDNLVIEEDLAS 625


>gi|291234700|ref|XP_002737286.1| PREDICTED: DNA topoisomerase II, beta isozyme-like [Saccoglossus
           kowalevskii]
          Length = 1649

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 142/715 (19%), Positives = 270/715 (37%), Gaps = 75/715 (10%)

Query: 3   DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQ--SASDNYDASSIRILEGLEPVRM 60
           DD   L +     ++ ++   K++G++P       +  S    Y          LE + +
Sbjct: 2   DDHSPLKTLFDSMNKKAAANDKEAGDVPPPKKKPGKRLSVERIYQKK-----TQLEHILL 56

Query: 61  RPGMYIGGTDE--------------------------KALHHLFSEVIDNAMDEVIAG-Y 93
           RP  YIG  +                             L+ +F E++ NA D       
Sbjct: 57  RPDTYIGSVEPLTQNMWVFDNDIGDNGGLCYREITFVPGLYKIFDEILVNAADNKQRDAK 116

Query: 94  ANLIEVSLDGNG-FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
            + I++++D +   ++V +NG+GIPV  H +        +I   L     +++   +++G
Sbjct: 117 MDCIKITIDPDNNQISVWNNGKGIPVVEH-QTEKVFVPTLIFGHLLTSSNYNDDERKVTG 175

Query: 153 GLHGVGISVVNALSDELHVTVA--RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           G +G G  + N  S +  VT A    +  F Q +   +  +     +    K  T ++F+
Sbjct: 176 GRNGYGAKLCNIFSSKFTVTTASMEYHKQFKQVWKNNMDKASEPAIKSFDGKDFTEVSFQ 235

Query: 211 PD--PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           PD              A L +     A ++  VK   +  +   + +             
Sbjct: 236 PDLSKFKMEKLDKDTVALLTRRAYDIAGINKGVKVYLNGKRLPVKSF------------- 282

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGG 328
            K Y+   +++++  + +      E         E  I   E+     S+ N+I T +GG
Sbjct: 283 -KDYVDLYVKDKTDENDQPLKVVHE---ICNERWEVCITLSEKGFNQVSFVNSIATTKGG 338

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            H   +   +   +       +NK  I+I    +       ++  +  P F  QTK  + 
Sbjct: 339 RHVDYVVDRIVEKVID-VVKKKNKGGINIRPFQIKNHIWVFVNCLVENPTFDSQTKENMT 397

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR 448
               +      L D    ++ Q              + + +    K+    + + +R + 
Sbjct: 398 LQVKKFGSVCKLSD---KFIKQTLTCGIVESIMNWVKFKAQNLLNKKCSAAKHSKLRGIP 454

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSE 505
                 D     +    L + EGDSA   A    +   R    V PLRGK+LNV  A  +
Sbjct: 455 KLDDANDAGTKNSKDCTLILTEGDSAKTLAVSGLSIVGRDKYGVFPLRGKLLNVREATHK 514

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
           +I  N +I ++++ +G + +  Y  +D    LRY K++IMTD D DG+HI  LL+ F + 
Sbjct: 515 QIMENAEINNVIKIMGLQYKKSYDSDDALKTLRYGKLMIMTDQDQDGSHIKGLLVNFIHH 574

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
               L++ K L     P+ + T+G +    +     ++  +E   H      +  +KGLG
Sbjct: 575 NWPSLLKHKFLEEFITPIVKATKGKEVFTFYSLPEFEEWKKETPNHHT--WRVKYYKGLG 632

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
                + KE   D  +  +    +            + +K    K DER +++ +
Sbjct: 633 TSTNKEAKEYFSDMVRHRIPFKYV--GPQDDAAITLAFSK---KKTDERKEWLTD 682


>gi|260172993|ref|ZP_05759405.1| DNA topoisomerase IV subunit B [Bacteroides sp. D2]
 gi|315921271|ref|ZP_07917511.1| DNA topoisomerase IV subunit B [Bacteroides sp. D2]
 gi|313695146|gb|EFS31981.1| DNA topoisomerase IV subunit B [Bacteroides sp. D2]
          Length = 625

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 190/673 (28%), Positives = 300/673 (44%), Gaps = 76/673 (11%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----EKALHHLFSEVIDNAMDEV 89
             + + +  Y   +IR L  +E VR RPGMYIG        E  ++ L  EVIDN++DE 
Sbjct: 8   PVDNNNAVEYTDDNIRHLSDMEHVRTRPGMYIGRLGDGAHAEDGIYVLLKEVIDNSIDEF 67

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
                  IE++++ N  ++V D GRGIP     +          ++ L+ GGK+D+  ++
Sbjct: 68  KMQAGKKIEITVEENLRVSVRDYGRGIPQGKLIE---------AVSMLNTGGKYDSKAFK 118

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
            S GL+GVG+  VNALS    V   R   +    FS+G  L+   +      + GT I F
Sbjct: 119 KSVGLNGVGVKAVNALSSRFEVRSYRDGKVRIATFSKGNLLTDETQ--STEEENGTYIFF 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD  +F +   F    +  M ++  YL+  +   ++  +                  GL
Sbjct: 177 EPDNTLFLNYC-FKPEFIETMLRNYTYLNTGLAIIYNGHRI-------------LSRNGL 222

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
              L   +    L       G+          +E A     +   E  S+ N   T +GG
Sbjct: 223 VDLLNDNMTATGLYPIIHLKGE---------DIEIAFTHTGQYGEEYYSFVNGQHTTQGG 273

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           TH+S  +  + R IK++          ++   D+    V  ++V + EP F  QTKTKL 
Sbjct: 274 THQSAFKEHIARTIKEFFN-------KNMDYTDIRNGLVAAIAVNVEEPIFESQTKTKLG 326

Query: 389 SLDA-------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           S +         + V + ++   D++L +N   A  + + + E  +ER       ++ R+
Sbjct: 327 STNMVPGGVTVNKYVGDFIKQEVDNFLHKNADVAEAIQQKIQESEKERKAIAGVTKLARE 386

Query: 442 TAIRKLRLPGKLADCSQNIAHGT--------ELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            A +      KL DC  ++             +FI EGDSA GS  ++R+ + QAV  LR
Sbjct: 387 RAKKANLHNRKLRDCRVHLNDPKGKGLEEDSCIFITEGDSASGSITKSRDVNTQAVFSLR 446

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIAS 553
           GK LN      + +  N++   L  AL          E LRY KVI+ TDADVDG HI  
Sbjct: 447 GKPLNSFGLTKKVVYENEEFNLLQAALNIE----DGIEGLRYNKVIVATDADVDGMHIRL 502

Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613
           LL+TFF Q   DLI++ H++++  PLFR+    K+ Y + EE +   + E   +     E
Sbjct: 503 LLITFFLQFFPDLIKKGHVYILQTPLFRVRNKKKTNYCYSEEERINAINELGPN----PE 558

Query: 614 ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKF 673
           I+RFKGLGE+   + K          L +V + K        ++ +   MG    ER  F
Sbjct: 559 ITRFKGLGEISPDEFKHFIG--KDMRLEQVTLRK----TDAVKELLEFYMGKNTMERQNF 612

Query: 674 IQERASFIDDVGT 686
           I +     +D+ +
Sbjct: 613 IIDNLVIEEDLAS 625


>gi|261188733|ref|XP_002620780.1| DNA topoisomerase 2 [Ajellomyces dermatitidis SLH14081]
 gi|239592012|gb|EEQ74593.1| DNA topoisomerase 2 [Ajellomyces dermatitidis SLH14081]
          Length = 1758

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 157/733 (21%), Positives = 283/733 (38%), Gaps = 84/733 (11%)

Query: 3   DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSP-------------AFANQSASDNYDASSI 49
           DD   L S  PP +    +K   S +    P             A   + +S+ Y     
Sbjct: 80  DDVASLLSATPPNAAAKGKKSGGSKKTSSKPLGNVENESFGMDGAATPKESSERY----- 134

Query: 50  RILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDNAM 86
           + L  LE +  RP  YIG  +                          L+ +F E++ NA 
Sbjct: 135 QKLTQLEHIIKRPDTYIGSIERSTNQMWVYNSESESMEFREVSYVPGLYKIFDEILVNAA 194

Query: 87  DEVIAG-YANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144
           D        + I V+++   G ++V +NGRGIP+E H +       E+I   L     ++
Sbjct: 195 DNRHNDKNMDEIRVTVNRESGEISVWNNGRGIPIEIHSR-EKVYIPELIFGHLLTSSNYN 253

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQ--NTIFSQKFSRGIPLSPLEKKEKVRNK 202
           +   +++GG +G G  + N  S E  +  A       + Q ++  +      K    +  
Sbjct: 254 DDQQKVTGGRNGYGAKLCNIFSTEFTLETADSKLKKKYKQTWTDNMSKMGKPKITDCKGD 313

Query: 203 RGTRITFRPD-PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             T++TF PD  K   D    D   L+K       L+G  K     +          +  
Sbjct: 314 DYTKVTFTPDFKKFGMDGIDDDFEALVKRR--VYDLAGTCKVTVKLNGSRVPVRNFKQYM 371

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
           + Y     K   +    ++S I ++                E   A  + + +  S+ N+
Sbjct: 372 QMYTNAIKKERGEEACRDKSEIITD----------NPDPRWEIGFAVSDGSFQQVSFVNS 421

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
           I T  GG+H + +   +   + +     +NK   ++    +       ++  I  P F  
Sbjct: 422 IATTSGGSHVNTVADQICNKLVE-VVKKKNKTGATLKPAQIRNHIFVFVNSQIVNPAFTS 480

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK +L +  +Q   +  L D F   +++  +        ++  +E++  +  ++    +
Sbjct: 481 QTKEQLTTKPSQFGSKCVLSDDFLKKILKTQVMEN-----IMHFAEKKADQILKKSDGNR 535

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILN 498
            +                  H   L + EGDSA G A   R         V PLRGK+LN
Sbjct: 536 RSRMNNPKLTDANKAGTKDGHHCTLILTEGDSAKGLAMAGRAIVGPDLFGVFPLRGKLLN 595

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLT 557
           V  A  ++I  N +I ++   LG + + +Y +   LRY  ++IMTD D DG+HI  LL+ 
Sbjct: 596 VRDASVDQISKNAEIQNIKNFLGLQHKKEYTDTKGLRYGHLMIMTDQDHDGSHIKGLLIN 655

Query: 558 FFYQEMYDLIEQK-HLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKGK 611
           FF      L++    L     P+ ++ +G     T S      +  +  LE        +
Sbjct: 656 FFQVAFPSLLKIPQFLIEFITPIVKVWKGDPKNPTISKSFFTMQEYETWLEIHG--HDKR 713

Query: 612 IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERF 671
            E   +KGLG       +    D ++  L +  + +D  + +    + +K    KADER 
Sbjct: 714 WEKKYYKGLGTSTTDDAEIYFRDLDRH-LKQFHVMRDHEA-ELIDLAFSK---KKADERK 768

Query: 672 KFIQE--RASFID 682
           +++++    +F+D
Sbjct: 769 EWLRQFKPGTFLD 781


>gi|326427379|gb|EGD72949.1| DNA topoisomerase II, variant [Salpingoeca sp. ATCC 50818]
          Length = 1761

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 141/707 (19%), Positives = 272/707 (38%), Gaps = 80/707 (11%)

Query: 15  QSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE--- 71
           +++ SS    ++ +     A A ++  + Y          LE + +RP  YIG  +    
Sbjct: 7   KARNSSSSTTQAMKKSKKGADAGKTVEEIYQKK-----TQLEHILLRPDTYIGSVESNTK 61

Query: 72  -------------------KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDG-NGFLTVV 110
                                L+ +F E+I NA D  I     + I+V++D     ++V 
Sbjct: 62  NLFVVDPEAGFVQREITYVPGLYKIFDEIIVNAADNKIRDPTMDCIKVTIDKAKAEISVY 121

Query: 111 DNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELH 170
           + G+GIPV+ H K       E+I   L     +D++  +++GG +G G  + N  S +  
Sbjct: 122 NTGKGIPVQVHAK-EGVYVPELIFGHLLTSSNYDDNQKKVTGGRNGYGAKLCNIFSTKFV 180

Query: 171 VTVARQN--TIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDK--AGFDA 224
           V          + Q F   + +       K +  +K  TRITFRPD   F          
Sbjct: 181 VETCDTETGKKYRQVFRDNMAIKEDPVIVKTKSSDKDFTRITFRPDLSKFHMSELDDDII 240

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
           A + +     A  +  +K   + ++     +              K Y+   L ++++ +
Sbjct: 241 ALMARRVYDVAGTTRGIKVYLNNERLPVRHF--------------KDYVNLVLRDQNVDT 286

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKK 344
             +               E  +   E   +  S+ N+I T +GGTH + +   +  G+  
Sbjct: 287 KVVH-------EVVNDRWEVCMTLSENGFQQMSFVNSIATTKGGTHVNYVADQIVSGL-- 337

Query: 345 YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF 404
            + + +  +  ++    +       ++  I  P F  QTK  +            L D F
Sbjct: 338 LSTIKRKNKGAAVKPHQVKNHMWLFINCLIENPSFDSQTKENMTRRSKDFGSNPVLSDKF 397

Query: 405 DHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP--GKLADCSQNIAH 462
                   I+ T +++ V+  ++ + + +  +  +     +   +P      +     + 
Sbjct: 398 LK-----NIKDTGIVDAVLNWAKLKSQAQLSKASSGSKKCKISGIPKLDDANEAGGRNSS 452

Query: 463 GTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
              L + EGDSA   A        R    V PLRGK+LNV  A  ++I +N ++ ++ + 
Sbjct: 453 KCTLILTEGDSAKALAVSGLGVLGRDYYGVFPLRGKLLNVREASHKQIMDNAEVKNIAKI 512

Query: 520 LGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK-HLFLISP 577
           +G +   +Y     LRY +++IMTD D DG+HI  LL+ F +     L++    L     
Sbjct: 513 MGLKFGHEYTTTKQLRYGRLMIMTDQDQDGSHIKGLLINFIHHFWPSLLKMPDFLVEFVT 572

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           P+ + T+G + V        +   E+          I  +KGLG     + KE     + 
Sbjct: 573 PIVKCTKGKQEVSFFTIPQYETWAEQQG--NLKGWRIKYYKGLGTSTPQEAKEYFSHMDD 630

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE--RASFID 682
              +      D    +D   + +K      + R ++++     +++D
Sbjct: 631 HQ-IPFSYEGD-KDFEDIVMAFSK---KHVEARKQWLKNFVPGTYLD 672


>gi|160884652|ref|ZP_02065655.1| hypothetical protein BACOVA_02641 [Bacteroides ovatus ATCC 8483]
 gi|156109687|gb|EDO11432.1| hypothetical protein BACOVA_02641 [Bacteroides ovatus ATCC 8483]
          Length = 625

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 191/673 (28%), Positives = 300/673 (44%), Gaps = 76/673 (11%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----EKALHHLFSEVIDNAMDEV 89
             + + +  Y   +IR L  +E VR RPGMYIG        E  ++ L  EVIDN++DE 
Sbjct: 8   PVDNNNAVEYTDDNIRHLSDMEHVRTRPGMYIGRLGDGAHAEDGIYVLLKEVIDNSIDEF 67

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
                  IE++++ N  ++V D GRGIP     +          ++ L+ GGK+D+  ++
Sbjct: 68  KMQAGKKIEITVEENLRVSVRDYGRGIPQGKLIE---------AVSMLNTGGKYDSKAFK 118

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
            S GL+GVG+  VNALS    V   R   +    FS+G  L+   K      + GT I F
Sbjct: 119 KSVGLNGVGVKAVNALSSRFEVRSYRDGKVRIATFSKGNLLTDETKN--TEEENGTYIFF 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD  +F +   F    +  M ++  YL+  +   ++  +                  GL
Sbjct: 177 EPDNTLFLNYC-FKPEFIETMLRNYTYLNTGLAIIYNGHRI-------------LSRNGL 222

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
              L   +    L       G+          +E A     +   E  S+ N   T +GG
Sbjct: 223 VDLLNDNMTATGLYPIIHLKGE---------DIEIAFTHTGQYGEEYYSFVNGQHTTQGG 273

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           TH+S  +  + R IK++          ++   D+    V  ++V + EP F  QTKTKL 
Sbjct: 274 THQSAFKEHIARTIKEFFN-------KNMDYTDIRNGLVAAIAVNVEEPIFESQTKTKLG 326

Query: 389 SLDA-------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           S +         + V + ++   D++L +N   A  + + + E  +ER       ++ R+
Sbjct: 327 STNMVPGGVTVNKYVGDFIKQEVDNFLHKNADIAEVIQQKIQESEKERKAIAGVTKLARE 386

Query: 442 TAIRKLRLPGKLADCSQNIAHGT--------ELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            A +      KL DC  ++             +FI EGDSA GS  ++R+ + QAV  LR
Sbjct: 387 RAKKANLHNRKLRDCRIHLNDPKGKGLEEDSCIFITEGDSASGSITKSRDVNTQAVFSLR 446

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIAS 553
           GK LN      + +  N++   L  AL          E LRY KVI+ TDADVDG HI  
Sbjct: 447 GKPLNSFGLTKKVVYENEEFNLLQAALNIE----DGIEGLRYNKVIVATDADVDGMHIRL 502

Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613
           LL+TFF Q   DLI++ H++++  PLFR+    K+ Y + EE +   + E   +     E
Sbjct: 503 LLITFFLQFFPDLIKKGHVYILQTPLFRVRNKKKTNYCYSEEERINAINELGPN----PE 558

Query: 614 ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKF 673
           I+RFKGLGE+   + K          L +V + K        ++ +   MG    ER  F
Sbjct: 559 ITRFKGLGEISPDEFKHFIG--KDMRLEQVTLRK----TDAVKELLEFYMGKNTMERQNF 612

Query: 674 IQERASFIDDVGT 686
           I +     +D+ +
Sbjct: 613 IIDNLVIEEDLAS 625


>gi|262405894|ref|ZP_06082444.1| DNA topoisomerase IV, B subunit [Bacteroides sp. 2_1_22]
 gi|294647852|ref|ZP_06725404.1| DNA topoisomerase IV subunit B [Bacteroides ovatus SD CC 2a]
 gi|294806249|ref|ZP_06765096.1| DNA topoisomerase IV subunit B [Bacteroides xylanisolvens SD CC 1b]
 gi|262356769|gb|EEZ05859.1| DNA topoisomerase IV, B subunit [Bacteroides sp. 2_1_22]
 gi|292636760|gb|EFF55226.1| DNA topoisomerase IV subunit B [Bacteroides ovatus SD CC 2a]
 gi|294446505|gb|EFG15125.1| DNA topoisomerase IV subunit B [Bacteroides xylanisolvens SD CC 1b]
          Length = 625

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 189/673 (28%), Positives = 301/673 (44%), Gaps = 76/673 (11%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----EKALHHLFSEVIDNAMDEV 89
             + + +  Y   +IR L  +E VR RPGMYIG        E  ++ L  EVIDN++DE 
Sbjct: 8   PVDNNNAVEYTDDNIRHLSDMEHVRTRPGMYIGRLGDGAHAEDGIYVLLKEVIDNSIDEF 67

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
                  IE++++ N  ++V D GRGIP     +          ++ L+ GGK+D+  ++
Sbjct: 68  KMQAGKKIEITVEENLRVSVRDYGRGIPQGKLIE---------AVSMLNTGGKYDSKAFK 118

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
            S GL+GVG+  VNALS    V   R   +    FS+G  L+   +      + GT I F
Sbjct: 119 KSVGLNGVGVKAVNALSSRFEVRSYRDGKVRIATFSKGNLLTDETQN--TEEENGTYIFF 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD  +F +   F    +  M ++  YL+  +   ++  +                  GL
Sbjct: 177 EPDNTLFLNYC-FKPEFIETMLRNYTYLNTGLAIIYNGHRI-------------LSRNGL 222

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
              L   +    L       G+          +E A     +   E  S+ N   T +GG
Sbjct: 223 VDLLNDNMTATGLYPIIHLKGE---------DIEIAFTHTGQYGEEYYSFVNGQHTTQGG 273

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           TH+S  +  + R IK++          ++   D+    V  ++V + EP F  QTKTKL 
Sbjct: 274 THQSAFKEHIARTIKEFFN-------KNMDYTDIRNGLVAAIAVNVEEPIFESQTKTKLG 326

Query: 389 SLDA-------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           S +         + V + ++   D++L +N   A  + + + E  +ER       ++ R+
Sbjct: 327 STNMVPGGVTVNKYVGDFIKQEVDNFLHKNADVAEAIQQKIQESEKERKAIAGVTKLARE 386

Query: 442 TAIRKLRLPGKLADCSQNIAHGT--------ELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            A +      KL DC  ++             +FI EGDSA GS  ++R+ + QAV  LR
Sbjct: 387 RAKKANLHNRKLRDCRIHLNDPKGKGLEEDSCIFITEGDSASGSITKSRDVNTQAVFSLR 446

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIAS 553
           GK LN      + +  N++   L  AL          + LRY KVI+ TDADVDG HI  
Sbjct: 447 GKPLNSFGLTKKVVYENEEFNLLQAALNIEDGL----DGLRYNKVIVATDADVDGMHIRL 502

Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613
           LL+TFF Q   DLI++ H++++  PLFR+    K++Y + EE +   + E   +     E
Sbjct: 503 LLITFFLQFFPDLIKKGHVYILQTPLFRVRNKKKTIYCYSEEERVNAINELSPN----PE 558

Query: 614 ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKF 673
           I+RFKGLGE+   + K          L +V + K        ++ +   MG    ER  F
Sbjct: 559 ITRFKGLGEISPDEFKHFIG--KDMRLEQVSLRK----TDAVKELLEFYMGKNTMERQNF 612

Query: 674 IQERASFIDDVGT 686
           I +     +D+ +
Sbjct: 613 IIDNLVIEEDLAS 625


>gi|239610333|gb|EEQ87320.1| DNA topoisomerase 2 [Ajellomyces dermatitidis ER-3]
          Length = 1804

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 157/733 (21%), Positives = 283/733 (38%), Gaps = 84/733 (11%)

Query: 3   DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSP-------------AFANQSASDNYDASSI 49
           DD   L S  PP +    +K   S +    P             A   + +S+ Y     
Sbjct: 80  DDVASLLSATPPNAAAKGKKSGGSKKTSSKPLGNVENESFGMDGAATPKESSERY----- 134

Query: 50  RILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDNAM 86
           + L  LE +  RP  YIG  +                          L+ +F E++ NA 
Sbjct: 135 QKLTQLEHIIKRPDTYIGSIERSTNQMWVYNSESESMEFREVSYVPGLYKIFDEILVNAA 194

Query: 87  DEVIAG-YANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144
           D        + I V+++   G ++V +NGRGIP+E H +       E+I   L     ++
Sbjct: 195 DNRHNDKNMDEIRVTVNRESGEISVWNNGRGIPIEIHSR-EKVYIPELIFGHLLTSSNYN 253

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQ--NTIFSQKFSRGIPLSPLEKKEKVRNK 202
           +   +++GG +G G  + N  S E  +  A       + Q ++  +      K    +  
Sbjct: 254 DDQQKVTGGRNGYGAKLCNIFSTEFTLETADSKLKKKYKQTWTDNMSKMGKPKITDCKGD 313

Query: 203 RGTRITFRPD-PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             T++TF PD  K   D    D   L+K       L+G  K     +          +  
Sbjct: 314 DYTKVTFTPDFKKFGMDGIDDDFEALVKRR--VYDLAGTCKVTVKLNGSRVPVRNFKQYM 371

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
           + Y     K   +    ++S I ++                E   A  + + +  S+ N+
Sbjct: 372 QMYTNAIKKERGEEASRDKSEIITD----------NPDPRWEIGFAVSDGSFQQVSFVNS 421

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
           I T  GG+H + +   +   + +     +NK   ++    +       ++  I  P F  
Sbjct: 422 IATTSGGSHVNTVADQICNKLVE-VVKKKNKTGATLKPAQIRNHIFVFVNSQIVNPAFTS 480

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK +L +  +Q   +  L D F   +++  +        ++  +E++  +  ++    +
Sbjct: 481 QTKEQLTTKPSQFGSKCVLSDDFLKKILKTQVMEN-----IMHFAEKKADQILKKSDGNR 535

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILN 498
            +                  H   L + EGDSA G A   R         V PLRGK+LN
Sbjct: 536 RSRMNNPKLTDANKAGTKDGHHCTLILTEGDSAKGLAMAGRAIVGPDLFGVFPLRGKLLN 595

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLT 557
           V  A  ++I  N +I ++   LG + + +Y +   LRY  ++IMTD D DG+HI  LL+ 
Sbjct: 596 VRDASVDQISKNAEIQNIKNFLGLQHKKEYTDTKGLRYGHLMIMTDQDHDGSHIKGLLIN 655

Query: 558 FFYQEMYDLIEQK-HLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKGK 611
           FF      L++    L     P+ ++ +G     T S      +  +  LE        +
Sbjct: 656 FFQVAFPSLLKIPQFLIEFITPIVKVWKGDPKNPTISKSFFTMQEYETWLEIHG--HDKR 713

Query: 612 IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERF 671
            E   +KGLG       +    D ++  L +  + +D  + +    + +K    KADER 
Sbjct: 714 WEKKYYKGLGTSTTDDAEIYFRDLDRH-LKQFHVMRDHEA-ELIDLAFSK---KKADERK 768

Query: 672 KFIQE--RASFID 682
           +++++    +F+D
Sbjct: 769 EWLRQFKPGTFLD 781


>gi|327349241|gb|EGE78098.1| DNA topoisomerase 2 [Ajellomyces dermatitidis ATCC 18188]
          Length = 1804

 Score =  396 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 157/733 (21%), Positives = 283/733 (38%), Gaps = 84/733 (11%)

Query: 3   DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSP-------------AFANQSASDNYDASSI 49
           DD   L S  PP +    +K   S +    P             A   + +S+ Y     
Sbjct: 80  DDVASLLSATPPNAAAKGKKSGGSKKTSSKPLGNVENESFGMDGAATPKESSERY----- 134

Query: 50  RILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDNAM 86
           + L  LE +  RP  YIG  +                          L+ +F E++ NA 
Sbjct: 135 QKLTQLEHIIKRPDTYIGSIERSTNQMWVYNSESESMEFREVSYVPGLYKIFDEILVNAA 194

Query: 87  DEVIAG-YANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144
           D        + I V+++   G ++V +NGRGIP+E H +       E+I   L     ++
Sbjct: 195 DNRHNDKNMDEIRVTVNRESGEISVWNNGRGIPIEIHSR-EKVYIPELIFGHLLTSSNYN 253

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQ--NTIFSQKFSRGIPLSPLEKKEKVRNK 202
           +   +++GG +G G  + N  S E  +  A       + Q ++  +      K    +  
Sbjct: 254 DDQQKVTGGRNGYGAKLCNIFSTEFTLETADSKLKKKYKQTWTDNMSKMGKPKITDCKGD 313

Query: 203 RGTRITFRPD-PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             T++TF PD  K   D    D   L+K       L+G  K     +          +  
Sbjct: 314 DYTKVTFTPDFKKFGMDGIDDDFEALVKRR--VYDLAGTCKVTVKLNGSRVPVRNFKQYM 371

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
           + Y     K   +    ++S I ++                E   A  + + +  S+ N+
Sbjct: 372 QMYTNAIKKERGEEASRDKSEIITD----------NPDPRWEIGFAVSDGSFQQVSFVNS 421

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
           I T  GG+H + +   +   + +     +NK   ++    +       ++  I  P F  
Sbjct: 422 IATTSGGSHVNTVADQICNKLVE-VVKKKNKTGATLKPAQIRNHIFVFVNSQIVNPAFTS 480

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK +L +  +Q   +  L D F   +++  +        ++  +E++  +  ++    +
Sbjct: 481 QTKEQLTTKPSQFGSKCVLSDDFLKKILKTQVMEN-----IMHFAEKKADQILKKSDGNR 535

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILN 498
            +                  H   L + EGDSA G A   R         V PLRGK+LN
Sbjct: 536 RSRMNNPKLTDANKAGTKDGHQCTLILTEGDSAKGLAMAGRAIVGPDLFGVFPLRGKLLN 595

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLT 557
           V  A  ++I  N +I ++   LG + + +Y +   LRY  ++IMTD D DG+HI  LL+ 
Sbjct: 596 VRDASVDQISKNAEIQNIKNFLGLQHKKEYTDTKGLRYGHLMIMTDQDHDGSHIKGLLIN 655

Query: 558 FFYQEMYDLIEQK-HLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKGK 611
           FF      L++    L     P+ ++ +G     T S      +  +  LE        +
Sbjct: 656 FFQVAFPSLLKIPQFLIEFITPIVKVWKGDPKNPTISKSFFTMQEYETWLEIHG--HDKR 713

Query: 612 IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERF 671
            E   +KGLG       +    D ++  L +  + +D  + +    + +K    KADER 
Sbjct: 714 WEKKYYKGLGTSTTDDAEIYFRDLDRH-LKQFHVMRDHEA-ELIDLAFSK---KKADERK 768

Query: 672 KFIQE--RASFID 682
           +++++    +F+D
Sbjct: 769 EWLRQFKPGTFLD 781


>gi|291618921|ref|YP_003521663.1| ParE [Pantoea ananatis LMG 20103]
 gi|291153951|gb|ADD78535.1| ParE [Pantoea ananatis LMG 20103]
          Length = 539

 Score =  396 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 202/548 (36%), Positives = 300/548 (54%), Gaps = 22/548 (4%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKF N  Y+ SGGLHGVGISVVNALS  + V V R   I+S  F  G  +  L     V
Sbjct: 6   GGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRNGEIYSIAFENGEKVQDLTVTGTV 65

Query: 200 -RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
            +   GT + F PD + F D   F  +RL  + ++KA L   V+  +       E     
Sbjct: 66  AKRNTGTSVHFWPD-EHFFDSPRFSVSRLSHLLKAKAVLCPGVEIVFKDKLNNTE----- 119

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--IT 316
             + + +  GL  YL   +     +  + F G           V+WA+ W  E  E    
Sbjct: 120 --QRWCYEDGLTDYLCEAVNGLPTLPEKPFVGTFAGDIE---AVDWALLWLPEGGELLTE 174

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIR 375
           SY N I T +GGTH +GLR  L   ++++ E      R + + ++D+      +LSV ++
Sbjct: 175 SYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQ 234

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           +P+FAGQTK +L S      V   ++D F  +L QN   A +L E  I  ++ R+R    
Sbjct: 235 DPQFAGQTKERLSSRQCAAFVSAVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AA 292

Query: 436 REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           ++V RK       LPGKLADC+    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GK
Sbjct: 293 KKVVRKKLTSGPALPGKLADCTAQDLNKTELFLVEGDSAGGSAKQARDREYQAIMPLKGK 352

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLL 555
           ILN     S+++  +Q++ D+  A+G    S+     LRY K+ I+ DAD DG HIA+LL
Sbjct: 353 ILNTWEVSSDEVLASQEVHDISVAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLL 411

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615
              F +    L++  H+++  PPL+RI  G +  YA DE+ K+ +LE+ K+  KGK  + 
Sbjct: 412 CALFVKHFRTLVKNGHVYVAMPPLYRIDLGKEVYYALDEDEKEGVLEQLKRK-KGKPNVQ 470

Query: 616 RFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFI 674
           RFKGLGEM   QL+ET +D N R L+++ ++ D   ++ T   ++ L+  K +++R  ++
Sbjct: 471 RFKGLGEMNPLQLRETTLDPNTRRLVQLTVSDD--DIEQTLRVMDMLLAKKRSEDRRNWL 528

Query: 675 QERASFID 682
           QE+    D
Sbjct: 529 QEKGDKAD 536


>gi|328947271|ref|YP_004364608.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Treponema succinifaciens DSM 2489]
 gi|328447595|gb|AEB13311.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Treponema succinifaciens DSM 2489]
          Length = 697

 Score =  396 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 180/683 (26%), Positives = 300/683 (43%), Gaps = 64/683 (9%)

Query: 15  QSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIG-----GT 69
           + + +         +  + A      S +Y    I  L+ LE +R+R GMYIG       
Sbjct: 68  KKESNVVSKTPDVSVVKASAKPVALKSKDYGDDKIIHLDALEHIRLRSGMYIGRLGDGSN 127

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
               ++ L  EV+DNA+DE I G+   IE+ +  +  + V D GRGIP+           
Sbjct: 128 QNDGIYILLKEVVDNAVDEFIMGFGKKIEIEV-KDSRVKVRDYGRGIPLGK--------V 178

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
           +E + + ++ G K+++  ++ S G++GVG   VNALS    V   R        F +G  
Sbjct: 179 VECV-SEINTGAKYNDDVFQFSVGMNGVGTKAVNALSSYFRVVSVRAGQCAEAVFEQGKL 237

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
           +S      K +   GT   F PD  IFG    F+   + K   + AYL+  +    +  +
Sbjct: 238 VSQRSGNLKQKQPDGTYFEFVPDEAIFGKYN-FNMEFVEKRIWNYAYLNAGLTLKLNGKE 296

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
                        +    GL   L  ++E  SL +   + G           +++A    
Sbjct: 297 -------------YKSDNGLFDLLNKEIEGTSLYAIGSYQGD---------RLKFAFTHT 334

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVG 368
                   S+ N   T +GGTH +  +    +GI  +   +         S+D+      
Sbjct: 335 NSYGENYFSFVNGQYTADGGTHLAAFKEGFVKGINDFYGTSYK-------SEDIREGMAA 387

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
            + V +++P F  QTK KL + D ++ + +  +   D +L  NP  A K+ E +    + 
Sbjct: 388 AVLVKVKDPVFESQTKNKLGNTDIRQWIVSETQSGLDDWLHHNPEAAKKIQEKIQANEKL 447

Query: 429 RLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAH-----GTELFIVEGDSAGGSAKQARN 483
           R      ++  ++ A +      KL DC  +I        + +FI EGDSA G+   +RN
Sbjct: 448 RTELSAVKKEAKEAARKISIRIPKLKDCRFHIQDGAKGENSMIFITEGDSASGTMTHSRN 507

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTD 543
              QA+  LRGK  N+      +I  N ++  L+ ALG         E+L+Y K++I TD
Sbjct: 508 ADYQAIFSLRGKPENMYGKKQSEIYKNDELYQLMMALGIE----QDVENLKYSKIVIATD 563

Query: 544 ADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEE 603
           AD DG HI +L++TFF     +L+    +F++  PLFR+    +++Y + EE + K  ++
Sbjct: 564 ADNDGFHIRNLVMTFFLGYFEELVTSGRIFILETPLFRVRNKKENIYCYSEEERDKAQKK 623

Query: 604 FKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLM 663
                    E +RFKGLGE+  S+ K+  +      L  VEI++    LK     ++  M
Sbjct: 624 LGSSA----ETTRFKGLGEISPSEFKD-FISPETIHLTPVEISQ----LKMVPKLLSFYM 674

Query: 664 GTKADERFKFIQERASFIDDVGT 686
           G    ER  FI++      D+  
Sbjct: 675 GKNTPERRAFIEKHLLSNADIDA 697


>gi|296809619|ref|XP_002845148.1| DNA topoisomerase II [Arthroderma otae CBS 113480]
 gi|238844631|gb|EEQ34293.1| DNA topoisomerase II [Arthroderma otae CBS 113480]
          Length = 1676

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 148/724 (20%), Positives = 283/724 (39%), Gaps = 71/724 (9%)

Query: 4   DSIDLFSTLPPQSQGSSEKLKKSGEIP-----DSPAFANQSASDNYDASSIRILEGLEPV 58
           D+++   + PP +   ++ + K          ++ +F  ++A     +   + +  LE +
Sbjct: 79  DNLESLGSTPPNASRKTKPVPKKTASKPLANVENESFITETAEGGGSSEKYQKITQLEHI 138

Query: 59  RMRPGMYIGGTD-----------------------EKALHHLFSEVIDNAMDEVIAGY-A 94
             RP  YIG  +                          L+ +F E++ NA D        
Sbjct: 139 LKRPDTYIGSVERTEKQMWVYNSTTELMEYREVSYVPGLYKIFDEILVNAADNKQNDPNM 198

Query: 95  NLIEVSLDGNG-FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           N I V+LD  G  ++V +NGRGIPVE H K       E+I   L     +++   +++GG
Sbjct: 199 NEIRVTLDKEGGEISVWNNGRGIPVEVHSK-EKIYIPELIFGHLLTSSNYNDQQEKVTGG 257

Query: 154 LHGVGISVVNALSDELHVTVA--RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
            +G G  + N  S+E  +  A  R    F   ++  +      K  + +    T++TF+P
Sbjct: 258 RNGYGAKLCNIFSNEFTIETADSRTKKKFKLTWTNNMSAMGKPKITECKGDDYTKVTFKP 317

Query: 212 DP-KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           D  K   +    D   L+K        +       +  K   + +        Y     K
Sbjct: 318 DFAKFGMEGMDDDFEALVKRRVYDMAGTCGTAVKLNGTKIPVKSFKK------YMEMYTK 371

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330
                + E+ +   ++I T   ++        E      + + +  S+ N+I T  GGTH
Sbjct: 372 AIKTERGEDPTSDKNDIITESPDR------RWEIGFTVSDGSFQQVSFVNSIATTSGGTH 425

Query: 331 ESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
            + +   +   +   A   +NK   ++ +  +       ++  I  P F  QTK +L + 
Sbjct: 426 VNYISDQICNKLAD-ALKKKNKTGATLKAAQIKNHIFLFVNCQIVNPAFTSQTKEQLTTR 484

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
            +Q   +  + D F   +++  +        ++  +E++  +  ++    + +       
Sbjct: 485 SSQFGSKCIVSDEFLKKVMKTRVMDD-----ILHFAEKKADQILKKTDGNRRSRMNNPKL 539

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKI 507
                      H   L + EGDSA G A   R         V PLRGK+LNV  A  ++I
Sbjct: 540 TDANKAGTKEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQI 599

Query: 508 RNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
             N +I ++   +G + + +Y +   LRY  ++IMTD D DG+HI  LL+ +       L
Sbjct: 600 SKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPTL 659

Query: 567 IEQ-KHLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           ++    L     P+ ++ +G     T S         ++  E        K +   +KGL
Sbjct: 660 LKIPGFLIEFITPIVKVWKGDPKNPTHSKSFFTLPEYEEWKETHA--HDKKWQKKYYKGL 717

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE--RA 678
           G       +    D +K       +       +  + + +K    KADER +++++    
Sbjct: 718 GTSSTEDAQIYFQDLDKHLKQFHTLQD--KEAELIELAFSK---KKADERKEWLRQFKPG 772

Query: 679 SFID 682
           +++D
Sbjct: 773 TYLD 776


>gi|70704892|gb|AAZ06864.1| DNA topoisomerase IV subunit B [Acholeplasma hippikon]
          Length = 549

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 196/563 (34%), Positives = 298/563 (52%), Gaps = 28/563 (4%)

Query: 68  GTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNK 127
            TD + LHHL  E++DNAMDEV+AG+ + I V++  +  + V DNGRG+P + H      
Sbjct: 1   STDGRGLHHLVWEIVDNAMDEVLAGFGDEISVTIKQDNSIEVSDNGRGMPYKMH--QSGI 58

Query: 128 STLEIILTTLHAGGKFDN-STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            T ++I T LHAGGKF +   Y+++GGLHGVG SVVNALS  L VTV +   IF QKF  
Sbjct: 59  PTTQVIFTVLHAGGKFGSEGGYKVAGGLHGVGSSVVNALSTALEVTVYKDGGIFKQKFED 118

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  +    ++     K GT + F+PDPKIF     ++   + +  +  AYL   +K    
Sbjct: 119 GGKIINPLERVGDSKKTGTTVWFKPDPKIFSTTL-YNYDTIKERLKESAYLIKGLKINLI 177

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWA 305
             ++  +       E F +  G+K Y+    E++  +       G  +        VE A
Sbjct: 178 DQRKNVK-------ETFKYDDGIKAYVSQLNESKQTLHEVQLVEGSFKASRGADIEVEVA 230

Query: 306 IAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDL 362
           + + +     I S+ N + T +GGTHE G + ALT+ I  Y    +   ++  ++   D+
Sbjct: 231 LQYTDGYQENIISFVNNVRTKDGGTHEIGFKSALTKVINDYARKYVLIKEKDDNLDGVDI 290

Query: 363 MISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL- 419
                 I+S+ + E   EF GQTK KL + DA+   E+   + F+ YL +N   + K++ 
Sbjct: 291 REGLTAIISLRVPESILEFEGQTKGKLGTPDARNATESVFYEKFNTYLEENRETSNKIIG 350

Query: 420 --EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
                    E   + R++   N+K   +++ L GKL        +  ELF+VEGDSAGGS
Sbjct: 351 KALAAARAREAARKAREEARDNKKKNKKEMILSGKLTPAQGKDKNINELFLVEGDSAGGS 410

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AKQ RNR  QA+LPLRGK+LN     ++ +  N++I  ++  +G      +  +   Y+K
Sbjct: 411 AKQGRNRRFQAILPLRGKVLNTEKTNTDTLLKNEEIATIIHTIGADFGPDFDIKKCNYKK 470

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT----KSVYAHD 593
           VIIMTDAD DGAHI  LLLTFF++ M  LIE   L++  PPL+++T+      + +YA  
Sbjct: 471 VIIMTDADDDGAHIQVLLLTFFFRYMRPLIEDGRLYIALPPLYKVTKKRGKKDEIIYAWS 530

Query: 594 EEHKQKILEEFKKHGKGKIEISR 616
           ++  ++ILE           I R
Sbjct: 531 DDELKEILE----MSDSNYNIQR 549


>gi|240952142|ref|XP_002399322.1| DNA topoisomerase II, putative [Ixodes scapularis]
 gi|215490528|gb|EEC00171.1| DNA topoisomerase II, putative [Ixodes scapularis]
          Length = 1582

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 139/713 (19%), Positives = 277/713 (38%), Gaps = 79/713 (11%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           M+ D  +  S   P ++ +      S +        N S    Y   S      LE + +
Sbjct: 1   MSSDE-EYGSPTTPAAKQNGAPAAASNK-------GNLSVERIYQKKS-----QLEHILL 47

Query: 61  RPGMYIGGTDE------------------------KALHHLFSEVIDNAMDEVIAG-YAN 95
           RP  YIG  +                           L+ +F E++ NA D        +
Sbjct: 48  RPDTYIGSVEPISQTMWVYDGEENGGMKNRSVTYVPGLYKIFDEILVNAADNKQRDKNMD 107

Query: 96  LIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
            I++ +D +   +++ +NGRGIPV  H K        +I   L     +++   +++GG 
Sbjct: 108 CIKIEIDPDANRISIWNNGRGIPVVEH-KVEKMFVPTLIFGHLLTSSNYNDEEKKVTGGR 166

Query: 155 HGVGISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLS-PLEKKEKVRNKRGTRITFRP 211
           +G G  + N  S +  V      +  +F Q +   +  +   + + + + +  TRITF P
Sbjct: 167 NGYGAKLCNIFSTKFIVETYSRSEKRLFKQVWEDNMKKTTEPKIRTEPKGEDFTRITFHP 226

Query: 212 DPKIFGDK--AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           D   F  +       A L +     A  +  VK   +  +   +              G 
Sbjct: 227 DLSKFSMEKLDADTVALLSRRAYDVAGCTRGVKVYLNGKRLPVK--------------GF 272

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGT 329
           K Y+   L+++   +    T   E   + R  V   ++   E     S+ N+I T +GG+
Sbjct: 273 KDYVGLFLKDKEDEAGNPLTVVYES-PSDRWEVAVTLSEAGEF-RQMSFVNSIATTKGGS 330

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           H   +   LT+ + +     +NK  + I +  +       ++  I  P F  QTK  +  
Sbjct: 331 HVDYIAEQLTKKVLE-NVKKKNKAGVKIQNKQIKDHVWVFVNCLIENPTFDSQTKENMTL 389

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
              +   +  L D F + +++  +    +     +  ++      +    + + ++ +  
Sbjct: 390 QAKKFGSKCELSDKFYNQVLKCGVVEAVMSWLTFKAQKQ---LGMKCSAKKHSKLKGIPK 446

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEK 506
                D     +    L + EGDSA   A        R    V PL+GK+LNV  A  ++
Sbjct: 447 LEDANDAGTRNSVDCTLILTEGDSAKSLAVSGLAVVGRDKYGVFPLKGKMLNVREASHKQ 506

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
           I  N +I ++++ +G + + +Y   +    LRY +++IMTD D DG+HI  L++ F +  
Sbjct: 507 ILENAEINNVIKIMGLQYKKKYESVEDLKALRYGRLMIMTDQDQDGSHIKGLVINFIHHN 566

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
              L++   L     P+ + ++G   +  +     ++   +       + ++  +KGLG 
Sbjct: 567 WPSLLKLPFLEEFITPIVKASKGKNEISFYSLPEFEEW--KTATDDWQRWKVKYYKGLGT 624

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675
               + KE   D  +  +      +     +  + + +K     AD+R  +++
Sbjct: 625 STGKEAKEYFSDMLRHRIKF--KYQGGEDDRAIELAFSK---KLADQRKDWLR 672


>gi|301633042|ref|XP_002945587.1| PREDICTED: DNA gyrase subunit B-like, partial [Xenopus (Silurana)
           tropicalis]
          Length = 506

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 209/509 (41%), Positives = 302/509 (59%), Gaps = 17/509 (3%)

Query: 71  EKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTL 130
            + LHHL  EV+DN++DE +AGY + IEV+++ +  +TV DNGRGIPV+ H K   KS L
Sbjct: 5   SQRLHHLVYEVVDNSIDEALAGYCDHIEVAINEDNSITVQDNGRGIPVDYHEK-EQKSAL 63

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+++T LHAGGKFD  +Y++SGGLHGVG+S VNALS  +   V R   I+ Q++  G PL
Sbjct: 64  EVVMTVLHAGGKFDKGSYKVSGGLHGVGVSCVNALSKHMTTQVFRNGKIYQQEYECGHPL 123

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
             +++     +  GTR  F PD  IF +   +    L    +  A+L+  +    +  ++
Sbjct: 124 YSVKEVG-TSDITGTRQQFWPDDTIFTETV-YSYDILATRMRELAFLNAGINISLTDLRQ 181

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E+      E F+   GLK +++    +R    +++    TEK+GT    VE AI +  
Sbjct: 182 KDEEG-NYRTELFHSDEGLKEFVRYVDSSRDHFMNDVIYINTEKQGTP---VEVAIMYNT 237

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                I SY N I T EGGTH +G R ALTR +KKYAE  +   K  + I  DD      
Sbjct: 238 SYSENIHSYVNNINTIEGGTHLAGFRRALTRTLKKYAEDNKMLEKAKVEIAGDDFREGLT 297

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            ++S+ + EP+F GQTKTKL + +    V+ A+ +   +YL ++P EA  +++ VI  ++
Sbjct: 298 AVISIKVAEPQFEGQTKTKLGNNEVSGAVDQAVGEALTNYLEEHPKEAKLIVDKVILAAQ 357

Query: 428 ERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R+  RK RE  ++ + +    +PGKLADCS       ELF+VEGDSAGGSAKQ RNRS 
Sbjct: 358 ARVAARKARESVQRKSPMSGGGMPGKLADCSSKDPEICELFLVEGDSAGGSAKQGRNRSF 417

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY------REEDLRYEKVII 540
           QA+LPLRGKILNV  A   K   + ++ +++QALG R             + LRY+KVII
Sbjct: 418 QAILPLRGKILNVEKAMWHKAFESDEVNNIIQALGIRFGVDNEDSKEANIDKLRYKKVII 477

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           MTDADVDG+HI +L++T F++    +I+Q
Sbjct: 478 MTDADVDGSHIDTLIMTLFFRYFPQVIQQ 506


>gi|73966011|ref|XP_863082.1| PREDICTED: similar to DNA topoisomerase II, alpha isozyme isoform 3
           [Canis familiaris]
          Length = 1533

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 140/694 (20%), Positives = 272/694 (39%), Gaps = 68/694 (9%)

Query: 17  QGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD------ 70
           Q  +E ++ S    +  A    S    Y          LE + +RP  YIG  +      
Sbjct: 7   QPVNENMQISKTKKNEDAKKRLSIERIYQKK-----TQLEHILLRPDTYIGSVELVTQQM 61

Query: 71  ----------------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDN 112
                              L+ +F E++ NA D        + I V++D  N  +++ +N
Sbjct: 62  WVYDEDIGMNYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNN 121

Query: 113 GRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVT 172
           G+GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V 
Sbjct: 122 GKGIPVVEH-KVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 180

Query: 173 V--ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLL 228
                   +F Q +   +  +   +      +  T ITF+PD   F  +       A ++
Sbjct: 181 TASREYKKMFKQTWMDNMGRAGEMELRPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMV 240

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           +     A  +  VK   + +K   +              G ++Y+   L+++   +    
Sbjct: 241 RRAYDIAGSTKDVKVFLNGNKLPVK--------------GFRSYVDMYLKDKVDETGNPL 286

Query: 289 TGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
               E+        E  +   E+  +  S+ N+I T +GG H   +   +   +      
Sbjct: 287 KIIHEQ---VNPRWEVCLTMSEKGFQQISFVNSIATSKGGRHVDYIADQIVTKLVD-VVK 342

Query: 349 TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
            +NK  +++ +  +       ++  I  P F  QTK  +            L + F   +
Sbjct: 343 KKNKGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQVKSFGSTCQLSEKFIKAV 402

Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFI 468
           +      + +L WV  +++  ++  K+    +   I+ +       D     ++   L +
Sbjct: 403 ISLFPVLSNILNWVKFKAQ--IQLNKKCSAVKHNRIKGIPKLDDANDAGGRNSNECTLIL 460

Query: 469 VEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
            EGDSA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +G + +
Sbjct: 461 TEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYK 520

Query: 526 SQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581
             Y +ED    LRY K++IMTD D DG+HI  LL+ F +     L+  + L     P+ +
Sbjct: 521 KNYDDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVK 580

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           +++  + +  +     ++       H   K ++  +KGLG   + + KE   +  +   +
Sbjct: 581 VSKNKQEMAFYSLPEFEEWKSSTPNH--KKWKVKYYKGLGTSTSKEAKEYFANMKRHR-I 637

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675
           + + +           + +K    + D+R +++ 
Sbjct: 638 QFKYS-GPEDDAAISLAFSK---KQIDDRKEWLT 667


>gi|149003442|ref|ZP_01828331.1| DNA gyrase subunit B [Streptococcus pneumoniae SP14-BS69]
 gi|147758625|gb|EDK65623.1| DNA gyrase subunit B [Streptococcus pneumoniae SP14-BS69]
          Length = 524

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 187/532 (35%), Positives = 287/532 (53%), Gaps = 21/532 (3%)

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           +G SVVNALS +L V V +   I  Q++ RG  ++ LE      ++ GT + F PDPKIF
Sbjct: 1   MGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFIPDPKIF 59

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   FD  +L K  Q  A+L+  ++   +  ++  E     + + +++ GG+ +Y++  
Sbjct: 60  TETTTFDFDKLNKRIQELAFLNRGLQISITDKRQGLE-----QTKHYHYEGGIASYVEYI 114

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335
            EN+ +I         E       TVE A+ +     E   S+ N I T EGGTHE G R
Sbjct: 115 NENKDVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFR 171

Query: 336 VALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR I  YA   +  +    ++  +D+      ++SV    P+F GQTKTKL + +  
Sbjct: 172 TALTRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVV 231

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
           +       + F  +L++NP  A +++E  ++        +R +    +K+ +    LPGK
Sbjct: 232 KITNRLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGK 291

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS N    TELFIVEGDSAGGSAK  RNR  QA+LP+RGKILNV  A  +KI  N++
Sbjct: 292 LADCSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEE 351

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  L  A+G    +++     RY+K+++MTDADVDGAHI +LLLT  Y+ M  ++E  ++
Sbjct: 352 IRSLFTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYV 411

Query: 573 FLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKK---HGKGKIEISRFKGLGEMLASQL 628
           ++  PP++ +  G++   Y      ++  L+E       G+ K  I R+KGLGEM   QL
Sbjct: 412 YIAQPPIYGVKVGSEIKEYIQPGADQEIKLQEALARYSEGRTKPTIQRYKGLGEMDDHQL 471

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET MD   R + RV ++       +     + LMG + + R +FI+E A +
Sbjct: 472 WETTMDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 519


>gi|320353624|ref|YP_004194963.1| DNA topoisomerase IV subunit B [Desulfobulbus propionicus DSM 2032]
 gi|320122126|gb|ADW17672.1| DNA topoisomerase IV subunit B [Desulfobulbus propionicus DSM 2032]
          Length = 610

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 190/654 (29%), Positives = 298/654 (45%), Gaps = 67/654 (10%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYA 94
               YD S I+ L  LE +R RPGMYIG        +  ++ L  E++DNA+DE I G+ 
Sbjct: 2   TEHQYDESKIKTLSSLEHIRKRPGMYIGRLGDGSHPDDGIYILLKEILDNAVDEFIMGHG 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             I++ +  +G   V D GRGIP+           +E + + ++ G K++   ++ S GL
Sbjct: 62  KRIDIHIGEDGLCRVRDYGRGIPLGK--------VVECV-SVINTGAKYNTEVFQFSVGL 112

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           +GVG   VNALS    VT  R     +  F++G  L   E++ +   K GT I F PD +
Sbjct: 113 NGVGTKAVNALSSHFTVTAFRDGRYKTAVFAQG--LLQREEEGETTEKNGTLIEFLPDSE 170

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
            F     FD   + +     AYL+  +      D              +    GL   L 
Sbjct: 171 SFPGFR-FDPQYVDQRLWRYAYLNAGLSLYLDRD-------------LYLSKNGLLDLLD 216

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
            ++ +  +     F  K         ++E+A    ++      S+ N   T EGGTH S 
Sbjct: 217 REVSSERIYPPIHFVDK---------SIEFAFTHTDDYGESYFSFVNGTYTSEGGTHLSA 267

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            R  + +GI ++     N         D+    VGIL+V ++EP F  QTK KL + D +
Sbjct: 268 FREGILKGINEFTGKKFN-------GLDVRDGIVGILAVKVQEPVFESQTKNKLGNTDIR 320

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
             + NA++D    +L + P  A  L++ V      R   +  R   +  A +      +L
Sbjct: 321 GPIVNAVKDAVATHLYKFPETAEVLVDKVQRNERVRRELQSVRRDAKAKAKKIAFKIPQL 380

Query: 454 ADCSQNIAH--------GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
            DC  + +            LFI EG SA GS   AR+   QAV  L+GK +NV     +
Sbjct: 381 KDCKYHPSRGQASKPGRENMLFITEGQSAAGSIVSARDPMTQAVFSLKGKPMNVLGQRLD 440

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
            +  N+++  L+QAL           DLRY+KVI+ TDADVDG HI +LLLTFF      
Sbjct: 441 VLYKNEEMYSLMQALNIE----DSIADLRYDKVILATDADVDGLHIRNLLLTFFLHYFEQ 496

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK--GKIEISRFKGLGEM 623
           LI+Q+ ++++  P+FR+    K+ Y + +    + +   K   K    +E +RFKGLGE+
Sbjct: 497 LIKQERVYILETPIFRVRNKEKTFYCYSDRDMDEAITALKVKSKADRAVETTRFKGLGEI 556

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
              + K+         L +V +++    L +    +   MG    ER ++I + 
Sbjct: 557 SPPEFKQFIG--QDMRLRQVRLDR----LSEVSRVLKFYMGKNTPERKQYIMDH 604


>gi|293372368|ref|ZP_06618752.1| DNA topoisomerase IV subunit B [Bacteroides ovatus SD CMC 3f]
 gi|292632551|gb|EFF51145.1| DNA topoisomerase IV subunit B [Bacteroides ovatus SD CMC 3f]
          Length = 625

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 189/673 (28%), Positives = 301/673 (44%), Gaps = 76/673 (11%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----EKALHHLFSEVIDNAMDEV 89
             + + +  Y   +IR L  +E VR RPGMYIG        E  ++ L  EVIDN++DE 
Sbjct: 8   PVDNNNAVEYTDDNIRHLSDMEHVRTRPGMYIGRLGDGAHAEDGIYVLLKEVIDNSIDEF 67

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
                  IE++++ N  ++V D GRGIP     +          ++ L+ GGK+D+  ++
Sbjct: 68  KMQAGKKIEITVEENLRVSVRDYGRGIPQGKLIE---------AVSMLNTGGKYDSKAFK 118

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
            S GL+GVG+  VNALS    V   R   +    FS+G  L+   +      + GT I F
Sbjct: 119 KSVGLNGVGVKAVNALSSRFEVRSYRDGKVRIATFSKGNLLTDETQN--TEEENGTYIFF 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD  +F +   F    +  M ++  YL+  +   ++  +                  GL
Sbjct: 177 EPDNTLFLNY-SFKPEFIETMLRNYTYLNTGLAIIYNGHRI-------------LSRNGL 222

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
              L   +    L       G+          +E A     +   E  S+ N   T +GG
Sbjct: 223 VDLLNDNMTATGLYPIIHLKGE---------DIEIAFTHTGQYGEEYYSFVNGQHTTQGG 273

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           TH+S  +  + R IK++          ++   D+    V  ++V + EP F  QTKTKL 
Sbjct: 274 THQSAFKEHIARTIKEFFN-------KNMDYTDIRNGLVAAIAVNVEEPIFESQTKTKLG 326

Query: 389 SLDA-------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           S +         + V + ++   D++L +N   A  + + + E  +ER       ++ R+
Sbjct: 327 STNMVPGGVTVNKYVGDFIKLEVDNFLHKNADVAEAIQQKIQESEKERKAIAGVTKLARE 386

Query: 442 TAIRKLRLPGKLADCSQNIAHGT--------ELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            A +      KL DC  ++             +FI EGDSA GS  ++R+ + QAV  LR
Sbjct: 387 RAKKANLHNRKLRDCRIHLNDPKGKGLEEDSCIFITEGDSASGSITKSRDVNTQAVFSLR 446

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIAS 553
           GK LN      + +  N++   L  AL          + LRY KVI+ TDADVDG HI  
Sbjct: 447 GKPLNSFGLTKKVVYENEEFNLLQAALNIEDGL----DGLRYNKVIVATDADVDGMHIRL 502

Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613
           LL+TFF Q   DLI++ H++++  PLFR+    K++Y + EE +   + E   +     E
Sbjct: 503 LLITFFLQFFPDLIKKGHVYILQTPLFRVRNKKKTIYCYSEEERVNAINELSPN----PE 558

Query: 614 ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKF 673
           I+RFKGLGE+   + K          L +V + K        ++ +   MG    ER  F
Sbjct: 559 ITRFKGLGEISPDEFKHFIG--KDMRLEQVSLRK----TDAVKELLEFYMGKNTMERQNF 612

Query: 674 IQERASFIDDVGT 686
           I +     +D+ +
Sbjct: 613 IIDNLVIEEDLAS 625


>gi|237721891|ref|ZP_04552372.1| DNA topoisomerase IV subunit B [Bacteroides sp. 2_2_4]
 gi|229448760|gb|EEO54551.1| DNA topoisomerase IV subunit B [Bacteroides sp. 2_2_4]
          Length = 625

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 189/673 (28%), Positives = 301/673 (44%), Gaps = 76/673 (11%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----EKALHHLFSEVIDNAMDEV 89
             + + +  Y   +IR L  +E VR RPGMYIG        E  ++ L  EVIDN++DE 
Sbjct: 8   PVDNNNAVEYTDDNIRHLSDMEHVRTRPGMYIGRLGDGAHAEDGIYVLLKEVIDNSIDEF 67

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
                  IE++++ N  ++V D GRGIP     +          ++ L+ GGK+D+  ++
Sbjct: 68  KMQAGKKIEITVEENLRVSVRDYGRGIPQGKLIE---------AVSMLNTGGKYDSKAFK 118

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
            S GL+GVG+  VNALS    V   R   +    FS+G  L+   +      + GT I F
Sbjct: 119 KSVGLNGVGVKAVNALSSRFEVRSYRDGKVRIATFSKGNLLTDETQN--TEEENGTYIFF 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD  +F +   F    +  M ++  YL+  +   ++  +                  GL
Sbjct: 177 EPDNTLFLNY-SFKPEFIETMLRNYTYLNTGLAIIYNGHRI-------------LSRNGL 222

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
              L   +    L       G+          +E A     +   E  S+ N   T +GG
Sbjct: 223 VDLLNDNMTATGLYPIIHLKGE---------DIEIAFTHTGQYGEEYYSFVNGQHTTQGG 273

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           TH+S  +  + R IK++          ++   D+    V  ++V + EP F  QTKTKL 
Sbjct: 274 THQSAFKEHIARTIKEFFN-------KNMDYTDIRNGLVAAIAVNVEEPIFESQTKTKLG 326

Query: 389 SLDA-------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           S +         + V + ++   D++L +N   A  + + + E  +ER       ++ R+
Sbjct: 327 STNMIPGGVTVNKYVGDFIKQEVDNFLHKNADVAEAIQQKIQESEKERKAIAGVTKLARE 386

Query: 442 TAIRKLRLPGKLADCSQNIAHGT--------ELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            A +      KL DC  ++             +FI EGDSA GS  ++R+ + QAV  LR
Sbjct: 387 RAKKANLHNRKLRDCRIHLNDPKGKGLEEDSCIFITEGDSASGSITKSRDVNTQAVFSLR 446

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIAS 553
           GK LN      + +  N++   L  AL          + LRY KVI+ TDADVDG HI  
Sbjct: 447 GKPLNSFGLTKKVVYENEEFNLLQAALNIEDGL----DGLRYNKVIVATDADVDGMHIRL 502

Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613
           LL+TFF Q   DLI++ H++++  PLFR+    K++Y + EE +   + E   +     E
Sbjct: 503 LLITFFLQFFPDLIKKGHVYILQTPLFRVRNKKKTIYCYSEEERVNAINELSPN----PE 558

Query: 614 ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKF 673
           I+RFKGLGE+   + K          L +V + K        ++ +   MG    ER  F
Sbjct: 559 ITRFKGLGEISPDEFKHFIG--KDMRLEQVSLRK----TDAVKELLEFYMGKNTMERQNF 612

Query: 674 IQERASFIDDVGT 686
           I +     +D+ +
Sbjct: 613 IIDNLVIEEDLAS 625


>gi|149054149|gb|EDM05966.1| topoisomerase (DNA) 2 alpha [Rattus norvegicus]
          Length = 1528

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 135/685 (19%), Positives = 264/685 (38%), Gaps = 69/685 (10%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD---------------- 70
            +  +       S    Y          LE + +RP  YIG  +                
Sbjct: 16  NKKKNEDGKKRLSVERIYQKK-----TQLEHILLRPDTYIGSVELVTQQMWVYDEDVGIN 70

Query: 71  ------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHP 122
                    L+ +F E++ NA D        + I V++D  N  +++ +NG+GIPV  H 
Sbjct: 71  YREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDAENNLISIWNNGKGIPVVEH- 129

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTV--ARQNTIF 180
           K        +I   L     +D+   +++GG +G G  + N  S +  V         +F
Sbjct: 130 KVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMF 189

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLLKMTQSKAYLS 238
            Q +   +  +   + +    +  T ITF+PD   F  +       A +++     A  +
Sbjct: 190 KQTWMDNMGRAGDMELKPFSGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGST 249

Query: 239 GRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH 298
             VK   + ++   +              G ++Y+   L+++   +        E+    
Sbjct: 250 KDVKVFLNGNRLPVK--------------GFRSYVDMYLKDKVDETGNALKVVHEQ---V 292

Query: 299 RGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII 358
               E  +   E+  +  S+ N+I T +GG H   +   +   +       +NK  +++ 
Sbjct: 293 NPRWEVCLTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVSKLVD-VVKKKNKGGVAVK 351

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
           +  +       ++  I  P F  QTK  +            L + F    +        +
Sbjct: 352 AHQVKNHMWIFVNALIENPTFDSQTKENMTLQAKSFGSTCQLSEKFIKAAIG-CGIVESI 410

Query: 419 LEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
           L WV  +++  ++  K+    +   I+ +       D     +    L + EGDSA   A
Sbjct: 411 LNWVKFKAQ--IQLNKKCSAVKHNRIKGIPKLDDANDAGSRNSAECTLILTEGDSAKTLA 468

Query: 479 KQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED--- 532
                   R    V PLRGKILNV  A  ++I  N +I ++++ +G + +  Y +ED   
Sbjct: 469 VSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLK 528

Query: 533 -LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYA 591
            LRY K++IMTD D DG+HI  LL+ F +     L+  + L     P+ ++++  + +  
Sbjct: 529 TLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQEIAF 588

Query: 592 HDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651
           +     ++       H   K ++  +KGLG   + + KE   +  +   ++ + +     
Sbjct: 589 YSLPEFEEWKSANPNH--KKWKVKYYKGLGTSTSKEAKEYFANMKRHR-IQFKYS-GPED 644

Query: 652 LKDTQDSINKLMGTKADERFKFIQE 676
                 + +K    + D+R +++  
Sbjct: 645 DAAISLAFSK---KQVDDRKEWLTN 666


>gi|145631753|ref|ZP_01787514.1| DNA gyrase subunit B [Haemophilus influenzae R3021]
 gi|144982614|gb|EDJ90160.1| DNA gyrase subunit B [Haemophilus influenzae R3021]
          Length = 483

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 191/493 (38%), Positives = 286/493 (58%), Gaps = 18/493 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           +++ +DNY ASSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   SETTNDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCS 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V D+GRGIPV+ HP+    S  E+I+T LHAGGKFD+++Y++SGGLH
Sbjct: 62  DIIVTIHDDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD+L +T+ RQ  +  Q +  G P SPL    +     GT + F P   I
Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGET-EATGTTVRFWPSSDI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     FD   L K  +  ++L+  V       ++ +E       + F++ GG++ +++ 
Sbjct: 180 F-AITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE-------DHFHYEGGIQAFVEY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGL 334
             +N++ I  + F    EK G     VE A+ W +  N  +  + N I   +GGTH +G 
Sbjct: 232 LNKNKNPIHPKPFYFTAEKDGI---GVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGF 288

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y E      K  ++   DD     V I+SV + +P+F+ QTK KLVS + 
Sbjct: 289 RGALTRSLNSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEV 348

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPG 451
           +  VE+A+ +    YL++NP +A  ++  +I         R+ +    RK A+    LPG
Sbjct: 349 KSAVESAMNEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPG 408

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSAK  R+R  QA+LPL+GKILNV  A  +K     
Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKNVVFP 468

Query: 512 QIMDLVQALGCRT 524
           +   +      R 
Sbjct: 469 RSGHINYCFRLRH 481


>gi|319900695|ref|YP_004160423.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Bacteroides helcogenes P 36-108]
 gi|319415726|gb|ADV42837.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Bacteroides helcogenes P 36-108]
          Length = 625

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 187/672 (27%), Positives = 308/672 (45%), Gaps = 76/672 (11%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVI 90
            +   S +Y   +IR L+ +E +R+R GMYIG       ++  ++ L  EV+DN++DE  
Sbjct: 9   QSNGQSVDYTEENIRHLDDMEHIRVRSGMYIGRLGDGSQNDDGIYVLLKEVMDNSIDEFK 68

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
            G    IEV+++ N  ++V D GRGIP     +          ++ L+ GGK+D+  ++ 
Sbjct: 69  MGAGKRIEVTIEENLRVSVRDYGRGIPQGKLIE---------AVSKLNTGGKYDSKAFKK 119

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           S GL+GVGI  VNALS    V   R   + +  F +G+  S   +      + GT I F 
Sbjct: 120 SVGLNGVGIKAVNALSSRFEVRSYRDGKVRTAIFEKGVLQSDETR--SSEEESGTFIFFE 177

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PD         F    +  + ++  YL+  +   ++  + ++        ++     GL 
Sbjct: 178 PD-STLFLNYLFQNTFVENLLRNYTYLNTGLAIIYNGQRILSRHGLEDLLKDNMTAEGLY 236

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
             +  K E+                      +E A     +   E  S+ N   T +GGT
Sbjct: 237 DIIHLKGED----------------------IEIAFTHTNQYGEEYYSFVNGQHTTQGGT 274

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           H+S L+  + + IK++          +    D+    V  +++ + EP+F GQTKTKL S
Sbjct: 275 HQSALKEHIAKTIKEFYN-------KNQEYSDIRNGIVAAIAINVEEPQFEGQTKTKLGS 327

Query: 390 LDA-------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
                      + V + ++   D+YL +NP+ +  +L+ + +  +ER       ++ R+ 
Sbjct: 328 PSMEPGGVSVNKYVGDFIKTEVDNYLHKNPLVSEVMLQKIQDSEKERKAIAGVTKLARER 387

Query: 443 AIRKLRLPGKLADCSQN--------IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           A +      KL DC  +            + +FI EGDSA GS  ++R+ + QAV  LRG
Sbjct: 388 AKKANLHNRKLRDCRFHLNDGKGKDKETESCIFITEGDSASGSITKSRDVNTQAVFSLRG 447

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           K LN      + +  N++   L  AL          E LRY KVI+ TDADVDG HI  L
Sbjct: 448 KPLNSYGLTKKVVYENEEFNLLQAALNIE----DGIEGLRYNKVIVATDADVDGMHIRLL 503

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           ++TFF Q   DLI++ H++++  PLFR+    K+ Y + E+ + K +EE   +     EI
Sbjct: 504 IITFFLQFFPDLIKKGHVYILQTPLFRVRNKKKTNYCYTEDERIKSIEELGPN----PEI 559

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
           +RFKGLGE+   + K          L +V + K        ++ +   MG    ER  FI
Sbjct: 560 TRFKGLGEISPDEFKHFIG--KDMRLEQVSLRK----TDLVKELLEFYMGKNTMERQNFI 613

Query: 675 QERASFIDDVGT 686
                  +D+ +
Sbjct: 614 INNLVIEEDLAS 625


>gi|315940113|gb|ADU56235.1| DNA gyrase subunit B [Nocardia speluncae]
          Length = 561

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 200/569 (35%), Positives = 305/569 (53%), Gaps = 40/569 (7%)

Query: 80  EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139
           EV+DN++DE +AGYA  IEV+L  +G + VVD+GRGIPV  H +     T+E+++T LHA
Sbjct: 1   EVVDNSVDEAMAGYATKIEVTLLADGGVQVVDDGRGIPVAMHDQ--GIPTIEVVMTQLHA 58

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+ +Y +SGGLHGVGISVVNALS  L   +      +SQ +   +P      +   
Sbjct: 59  GGKFDSDSYAVSGGLHGVGISVVNALSSRLEAEIDTDGYHWSQTYKDAVPGQL--VQGDA 116

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------- 249
               GT I F  DP IF     ++   + +  Q  A+L+  +    + ++          
Sbjct: 117 TKATGTTIRFWADPAIFETTT-YNFETISRRLQEMAFLNKGLTIVLTDERVSATEITDEV 175

Query: 250 --------EIAEKYGIPEKEE------FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
                   +  E    P  E       +++PGGL+ +++     +  I + +F+   +  
Sbjct: 176 VSETAEAPKHDEGGEKPALEHKVKTRTYHYPGGLEDFVRHINRTKQPIHNSVFSFNGKGP 235

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA 354
           G     +E A+ W       + ++ NTI T EGGTHE G R ALT  + +YA+  +  + 
Sbjct: 236 GH---ELEVALQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNRYAKEKKLLKD 292

Query: 355 I--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
              ++  DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP
Sbjct: 293 KDGNLTGDDIREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRACNEHLAHWFEANP 352

Query: 413 IEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
            +A  ++   +  ++ RL  RK RE V RK+A     LPGKLADC       +E++IVEG
Sbjct: 353 ADAKTIVNKAVSSAQARLAARKARELVRRKSATDIGGLPGKLADCRSKDPSKSEIYIVEG 412

Query: 472 DSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE 531
           DSAGGSAK  R+   QA+LPLRGKI+NV  A  +K+  N ++  ++ A G     ++   
Sbjct: 413 DSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDKVLKNAEVQAIITAFGTGIHDEFDIA 472

Query: 532 DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVY 590
            LRY K+++M DADVDG HI++LLLT  ++ M  LIEQ H++L  PPL+++     +  +
Sbjct: 473 KLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLIEQGHVYLAQPPLYKLKWQRSEPEF 532

Query: 591 AHDEEHKQKILE---EFKKHGKGKIEISR 616
           A+ +  +  +LE      K       I R
Sbjct: 533 AYSDRERDGLLEAGLSAGKKINKDDGIQR 561


>gi|311746902|ref|ZP_07720687.1| putative DNA topoisomerase IV, B subunit [Algoriphagus sp. PR1]
 gi|126578591|gb|EAZ82755.1| putative DNA topoisomerase IV, B subunit [Algoriphagus sp. PR1]
          Length = 631

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 193/664 (29%), Positives = 307/664 (46%), Gaps = 76/664 (11%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            Y   SIR L+  E +R+RPGMYIG        +  ++ L  EV+DN++DE + GY   I
Sbjct: 6   QYTEDSIRSLDWREHIRLRPGMYIGKLGDGSAQDDGIYVLVKEVLDNSIDEHMMGYGRTI 65

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           EV +     + + D GRGIP+           +   ++ ++ GGK+D+  ++ S GL+GV
Sbjct: 66  EVKI-SEHKVEIRDYGRGIPLGK---------VIDCVSKINTGGKYDSGAFQKSVGLNGV 115

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G   VNALSD   V   R       +F +G+  +      K  ++ GT++ F PD  IF 
Sbjct: 116 GTKAVNALSDFFKVQAYRDGQTKVAEFEKGVLTNDPPV-TKSSDRNGTKVVFSPDASIFK 174

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L     + AYL+  +   ++  K  ++K             GL   L  K+
Sbjct: 175 NYH-FIPDYLENQIWNYAYLNAGLTINFNGKKYFSDK-------------GLYDLLSNKV 220

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           +  S     I              +E AI    +   E  S+ N   T +GGTH S  R 
Sbjct: 221 DEESARYPIIHL--------KGNDIEVAITHSNQYGEEYYSFVNGQYTTQGGTHLSAFRE 272

Query: 337 ALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA---- 392
           ++ + ++++ +           + D+  S V  ++V ++EP F  QTKTKL S       
Sbjct: 273 SIVKTVREFFK-------KDYDASDIRQSVVASIAVRVQEPVFESQTKTKLGSHSVGPDG 325

Query: 393 ---QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
              +  V + ++   D+YL +NP  A  LL+ +++   ER      +++  + A +    
Sbjct: 326 PTLRTFVNDFIKVELDNYLHKNPAVADALLKRILQSERERKEISGIKKLANERAKKANLH 385

Query: 450 PGKLADCSQNIA---------HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
             KL DC  +           + T LFI EGDSA GS  ++R+   QAV  LRGK LN  
Sbjct: 386 NKKLRDCRVHYDDAKADEDKKNNTMLFITEGDSASGSITKSRDVQTQAVFSLRGKPLNCY 445

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           S   + +  N++   L  AL          E+LRY K++I TDADVDG HI  L++T+F 
Sbjct: 446 SMTKKVVYENEEFNLLQHALNIE----DGIENLRYRKIVIATDADVDGMHIRLLIMTYFL 501

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           Q   DL++  HLF++  PLFR+    +++Y + +E +Q+ + +       K EI+RFKGL
Sbjct: 502 QFFPDLVKNGHLFILDTPLFRVRNKKETIYCYSDEERQRAIHKLG----SKPEITRFKGL 557

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GE+   +            L  + +NK+        D +   MG     R +FI +    
Sbjct: 558 GEISPEEFGNFIG--EDIRLEPIILNKETK----IADLLGFYMGKNTPNRQQFIIKNLKI 611

Query: 681 IDDV 684
             D+
Sbjct: 612 EKDL 615


>gi|126308150|ref|XP_001369978.1| PREDICTED: similar to DNA topoisomerase II (EC 5.99.1.3)
           [Monodelphis domestica]
          Length = 1548

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 138/694 (19%), Positives = 269/694 (38%), Gaps = 69/694 (9%)

Query: 17  QGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE----- 71
           Q  +E L+ +    +       S    Y          LE + +RP  YIG  +      
Sbjct: 8   QPVNENLQINKIKKNEDTKKRLSVERIYQKK-----TQLEHILLRPDTYIGSVEVVTQQM 62

Query: 72  -----------------KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDN 112
                              L+ +F E++ NA D        N I+V++D  N  +++ +N
Sbjct: 63  WVYDEEVGLNYRDVTFVPGLYKIFDEILVNAADNKQRDPKMNCIKVTIDSENNTISIWNN 122

Query: 113 GRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVT 172
           G+GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V 
Sbjct: 123 GKGIPVVEH-KVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 181

Query: 173 --VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLL 228
                   +F Q +   +  +     +    +  T ITF+PD   F          A + 
Sbjct: 182 TACKEYKKMFKQTWMDNMGKAGEMTLKPFSGEDYTCITFQPDLSKFKMTSLDKDMVALMS 241

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           +     A  +  VK   + ++   +              G ++Y+   ++++   +    
Sbjct: 242 RRAYDIAGSTKDVKVFLNGNRLPVK--------------GFRSYVDLYVKDKLDETGNPL 287

Query: 289 TGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
               E+        E  +   E+  +  S+ N+I T +GG H   +   +   +      
Sbjct: 288 KIIHEEVNH---RWEVCLTMSEKGFQQISFVNSIATSKGGRHVDYVADQIISRLID-VVK 343

Query: 349 TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
            +NK  +++ +  +       ++  I  P F  QTK  +         +  L + F    
Sbjct: 344 KKNKGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQAKNFGSKCELSEKFIKAA 403

Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFI 468
           +        +L WV  +++  ++  K+    +   I+ +       D     +    L +
Sbjct: 404 IG-CGIVESILNWVKFKAQ--VQLNKKCSAVKHNRIKGIPKLDDANDAGSKNSTDCTLIL 460

Query: 469 VEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
            EGDSA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +G + +
Sbjct: 461 TEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYK 520

Query: 526 SQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581
             Y + D    LRY K++IMTD D DG+HI  LL+ F +     L++   L     P+ +
Sbjct: 521 KNYEDADSLKSLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHCFLEEFITPIVK 580

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           +++  + +  +     ++     + H   K ++  +KGLG   + + KE   D ++   +
Sbjct: 581 VSRNKQEMSFYSLPEFEEWKNTTENH--KKWKVKYYKGLGTSTSKEAKEYFSDMSRHR-I 637

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675
           + + +           + +K    + D+R +++ 
Sbjct: 638 QFKYS-GPEDDAAISLAFSK---KQIDDRKEWLT 667


>gi|153945749|ref|NP_035753.2| DNA topoisomerase 2-alpha [Mus musculus]
 gi|148684229|gb|EDL16176.1| topoisomerase (DNA) II alpha [Mus musculus]
          Length = 1528

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 137/691 (19%), Positives = 264/691 (38%), Gaps = 69/691 (9%)

Query: 21  EKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD---------- 70
            +     +  +       S    Y          LE + +RP  YIG  +          
Sbjct: 10  NENMLMNKKKNEDGKKRLSIERIYQKK-----TQLEHILLRPDTYIGSVELVTQQMWVYD 64

Query: 71  ------------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGI 116
                          L+ +F E++ NA D        + I V++D  N  +++ +NG+GI
Sbjct: 65  EDVGINYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNVISIWNNGKGI 124

Query: 117 PVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTV--A 174
           PV  H K        +I   L     +D+   +++GG +G G  + N  S +  V     
Sbjct: 125 PVVEH-KVEKIYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASR 183

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLLKMTQ 232
               +F Q +   +  +   + +    +  T ITF+PD   F  +       A +++   
Sbjct: 184 EYKKMFKQTWMDNMGRAGDMELKPFSGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAY 243

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             A  +  VK   + +    +              G ++Y+   L+++   +        
Sbjct: 244 DIAGSTKDVKVFLNGNSLPVK--------------GFRSYVDLYLKDKVDETGNSLKVIH 289

Query: 293 EKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK 352
           E+        E  +   E   +  S+ N+I T +GG H   +   +   +       +NK
Sbjct: 290 EQ---VNPRWEVCLTMSERGFQQISFVNSIATSKGGRHVDYVADQIVSKLVD-VVKKKNK 345

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +++ +  +       ++  I  P F  QTK  +            L + F    +   
Sbjct: 346 GGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQAKSFGSTCQLSEKFIKAAIG-C 404

Query: 413 IEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
                +L WV  +++  ++  K+    + T I+ +       D     +    L + EGD
Sbjct: 405 GIVESILNWVKFKAQ--IQLNKKCSAVKHTKIKGIPKLDDANDAGSRNSTECTLILTEGD 462

Query: 473 SAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           SA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +G + +  Y 
Sbjct: 463 SAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKNYE 522

Query: 530 EED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG 585
           +ED    LRY K++IMTD D DG+HI  LL+ F +     L+  + L     P+ ++++ 
Sbjct: 523 DEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKN 582

Query: 586 TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645
            + +  +     ++       H   K ++  +KGLG   + + KE   D  +   ++ + 
Sbjct: 583 KQEIAFYSLPEFEEWKSSTPNH--KKWKVKYYKGLGTSTSKEAKEYFADMKRHR-IQFKY 639

Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           +           + +K    + D+R +++  
Sbjct: 640 S-GPEDDAAISLAFSK---KQVDDRKEWLTN 666


>gi|317158221|ref|XP_001826919.2| DNA topoisomerase 2 [Aspergillus oryzae RIB40]
          Length = 1700

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 159/732 (21%), Positives = 281/732 (38%), Gaps = 83/732 (11%)

Query: 3   DDSIDLFSTLPPQSQGSSEKLKKSGEIPDS------------PAFANQSASDNYDASSIR 50
           DD   + S  PP+    +   KK G  P +                + + S+ Y     +
Sbjct: 75  DDEDSVLSHTPPKKAKKAPASKKGGSKPLADVENESFTNEADAGPKDSNVSEKY-----Q 129

Query: 51  ILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDNAMD 87
            L  LE +  RP  YIG  +                          L+ +F E++ NA D
Sbjct: 130 KLTQLEHIIKRPDTYIGSIERTSQQMWVYSTESDGMEFREVSYVPGLYKIFDEIVVNAAD 189

Query: 88  EVIAG-YANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
                   + I V++    G ++V +NGRGIP+E H K       E+I   L     +D+
Sbjct: 190 NKQNDANMDEIRVTISRETGEISVWNNGRGIPIEMHAK-EKIYVPELIFGHLLTSSNYDD 248

Query: 146 STYEISGGLHGVGISVVNALSDEL--HVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           +  +++GG +G G  + N  S E       +RQ   + Q ++  +      K    +   
Sbjct: 249 TQQKVTGGRNGFGAKLCNVFSTEFSIETQDSRQKKKYKQTWTSNMTKMGKAKITDAKGDD 308

Query: 204 GTRITFRPDP-KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            T++TF+PD  K   D    D   L+K        + +V    +  +     +       
Sbjct: 309 YTKVTFKPDYAKFGMDGMDNDFEALVKRRVYDLAGTAKVAVKLNGSRVPVRNFKK----- 363

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
            Y     K   + + ++      EI T             E   A  + + +  S+ N+I
Sbjct: 364 -YMEMYTKAIRRERGDDGPAAKDEIITCS------PDPRWEVGFAVSDGSFQQVSFVNSI 416

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T  GGTH + +   +   +       +NK   ++    +       ++  I  P F  Q
Sbjct: 417 ATTSGGTHVNYIADQICSKLAD-QVKKKNKNGATLKPAQIRNHIFIFVNAQIVNPAFTSQ 475

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK +L +  +Q   +  L + F   +++     T ++  ++  ++++  +  ++    + 
Sbjct: 476 TKEQLTTKSSQFGSKCVLEEDFYKKILK-----TDVMSNILHFAQQKADQMLKKTDGGRR 530

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNV 499
           A                  H   L + EGDSA G A   R         V PLRGK+LNV
Sbjct: 531 ARMNNPKLTDANKAGTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNV 590

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTF 558
             A  E+I  N +I ++   LG + + +Y +   LRY  ++IMTD D DG+HI  LL+ F
Sbjct: 591 RDATFEQISKNAEIQNIKNFLGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINF 650

Query: 559 FYQEMYDLIEQK-HLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKGKI 612
              +   L+     L     P+ ++ +G     TK          +   EE K   +   
Sbjct: 651 LQAQFPSLLRIPEFLIEFITPIIKVWKGDPKNPTKQRSFFTMPEYEAWKEEHK--HERGW 708

Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
           E   +KGLG       +    D ++       +    N +   + + +K    KADER +
Sbjct: 709 EHKYYKGLGTSTTEDAQVYFRDLDRHLKEFHTMQD--NEVGLIELAFSK---KKADERKE 763

Query: 673 FIQE--RASFID 682
           ++++    +F+D
Sbjct: 764 WLRQFKPGTFLD 775


>gi|267150|sp|Q01320|TOP2A_MOUSE RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
           topoisomerase II, alpha isozyme
 gi|220616|dbj|BAA02076.1| DNA topoisomerase II [Mus musculus]
          Length = 1528

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 138/691 (19%), Positives = 263/691 (38%), Gaps = 69/691 (9%)

Query: 21  EKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD---------- 70
            +     +  +       S    Y          LE + +RP  YIG  +          
Sbjct: 10  NENMLMNKKKNEDGKKRLSIERIYQKK-----TQLEHILLRPDTYIGSVELVTQQMWVYD 64

Query: 71  ------------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGI 116
                          L+ +F E++ NA D        + I V++D  N  +++ +NG+GI
Sbjct: 65  EDVGINYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNVISIWNNGKGI 124

Query: 117 PVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR- 175
           PV  H K        +I   L     +D+   +++GG +G G  + N  S +  V  A  
Sbjct: 125 PVVEH-KVEKIYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASR 183

Query: 176 -QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLLKMTQ 232
               +F Q +   +  +   + +    +  T ITF+PD   F  +       A +++   
Sbjct: 184 AYKKMFKQTWMDNMGRAGDMELKPFSGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAY 243

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             A  +  VK   + +                   G ++Y+   L+++   +        
Sbjct: 244 DIAGSTKDVKVFLNGN--------------MLPVKGFRSYVDLYLKDKVDETGNSLKVIH 289

Query: 293 EKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK 352
           E+        E  +   E   +  S+ N+I T +GG H   +   +   +       +NK
Sbjct: 290 EQ---VNPRWEVCLTMSERGFQQISFVNSIATSKGGRHVDYVADQIVSKLVD-VVKKKNK 345

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +++ +  +       ++  I  P F  QTK  +            L + F    +   
Sbjct: 346 GGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQAKSFGSTCQLSEKFIKAAIG-C 404

Query: 413 IEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
                +L WV  +++  ++  K+    + T I+ +       D     +    L + EGD
Sbjct: 405 GIVESILNWVKFKAQ--IQLNKKCSAVKHTKIKGIPKLDDANDAGSRNSTECTLILTEGD 462

Query: 473 SAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           SA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +G + +  Y 
Sbjct: 463 SAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKNYE 522

Query: 530 EED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG 585
           +ED    LRY K++IMTD D DG+HI  LL+ F +     L+  + L     P+ ++++ 
Sbjct: 523 DEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKN 582

Query: 586 TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645
            + +  +     ++       H   K ++  +KGLG   + + KE   D  +   ++ + 
Sbjct: 583 KQEIAFYSLPEFEEWKSSTPNH--KKWKVKYYKGLGTSTSKEAKEYFADMKRHR-IQFKY 639

Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
                       + +K    + D+R +++  
Sbjct: 640 P-GPEDDAAISLAFSK---KQVDDRKEWLTN 666


>gi|106734229|gb|ABF82591.1| DNA topoisomerase IV subunit beta [Exiguobacterium sp. Indian
           Stream]
          Length = 493

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 202/503 (40%), Positives = 291/503 (57%), Gaps = 14/503 (2%)

Query: 63  GMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122
           GMYIG T  K LHHL  E++DN++DE +AGY + I+V+++    + V DNGRGIPV+   
Sbjct: 1   GMYIGSTASKGLHHLVWEIVDNSIDEALAGYCDTIKVTIEPGNSILVEDNGRGIPVDIQE 60

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
           K   +  +E+ILT LHAGGKF    Y++SGGLHGVG SVVNALS +L V V R   ++ Q
Sbjct: 61  KM-GRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTKLEVFVKRNEKLYYQ 119

Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
            + RG+P++ LE       + GT I F PD +IF +   +D   L    +  A+L+  + 
Sbjct: 120 AYHRGVPVADLEIIG-TSEETGTMIRFFPDDEIFQETLEYDYDLLATRLRELAFLNKGLT 178

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
              + D+        P    F++ GG+K+Y++    ++ ++  E       + G     V
Sbjct: 179 IEITDDR-----ADEPITRSFHYEGGIKSYVEHLNRSKEVVHEEPVYVHGNRDGI---EV 230

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IIS 359
           E A+ + +     I S+ N I T EGGTHE+G + ALTR I  YA+     +     +  
Sbjct: 231 EVALQYNDGFAANIYSFTNNIPTHEGGTHETGFKTALTRVINDYAKKFGLMKEADGTLSG 290

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           +D+      I+S+    P+F GQTKTKL + DA+   +      F+ ++++NP  A  ++
Sbjct: 291 EDVREGMTAIVSIKHPNPQFEGQTKTKLGNSDARTATDTLFSSAFEQFMMENPTSARAIV 350

Query: 420 EW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
           E  ++        +R +    RK  +    LPGKLADCS   A  +E++IVEGDSAGGSA
Sbjct: 351 EKGMMASRARMAAKRARELTRRKGVLEVSSLPGKLADCSSRDATISEIYIVEGDSAGGSA 410

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538
           K  R+R  QA+LP+RGKILNV  A  +KI  + +I  ++ ALG    S++  E  RY KV
Sbjct: 411 KSGRDRHFQAILPIRGKILNVEKARLDKILGSNEIRTIITALGTSIGSEFNIEKARYHKV 470

Query: 539 IIMTDADVDGAHIASLLLTFFYQ 561
           IIMTDADVDGAHI +LLLTFFY+
Sbjct: 471 IIMTDADVDGAHIRTLLLTFFYR 493


>gi|124002042|ref|ZP_01686896.1| topoisomerase IV subunit B [Microscilla marina ATCC 23134]
 gi|123992508|gb|EAY31853.1| topoisomerase IV subunit B [Microscilla marina ATCC 23134]
          Length = 621

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 188/654 (28%), Positives = 302/654 (46%), Gaps = 74/654 (11%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           Y   +I+ L+  E +R RPGMYIG        +  ++ L  E++DN++DE + G+   IE
Sbjct: 4   YTEDNIKTLDWREHIRKRPGMYIGKLGNGSAQDDGIYVLVKEILDNSIDEHMMGFGKKIE 63

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           + L     + V D GRGIP+           +   ++ ++ GGK+D+  ++ S GL+GVG
Sbjct: 64  IKL-EEKRVVVRDYGRGIPLGK---------VIDCVSKINTGGKYDSDAFQKSVGLNGVG 113

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
              VNALS    V   R       +F++G+ ++  E   K   + GT   F PD  +F +
Sbjct: 114 TKAVNALSAYFKVQSFRDGETKVAEFNQGV-ITNDEPIAKTSERNGTLTIFEPDNDVFVN 172

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              ++   L  +  + A+L+  +K  ++  +             ++   GL   L     
Sbjct: 173 Y-KYNPDFLEDLIWNYAFLNAGLKIKFNGKE-------------YFSENGLLD-LLRFKT 217

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ I   I   K          +E A+    +   E  S+ N   T +GGTH S  R +
Sbjct: 218 NKTNIRYPIIHLKGND-------IEVALTHSNQYGEEYYSFVNGQNTTQGGTHLSAFRES 270

Query: 338 LTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD------ 391
           + +  + +             S D+  S V  +S+ ++EP F  QTKTKL S        
Sbjct: 271 VVKVARDFYG-------KDFDSADVRASIVATVSIRVQEPVFESQTKTKLGSQQVAPGGL 323

Query: 392 -AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
             +  V + ++   D+YL +NP  A  +   +++  +ER      +++  + A +     
Sbjct: 324 SIRAFVNDFIKTELDNYLHRNPEVAKAIEARILQSEKERKEISVIKKLANQKARKANLHN 383

Query: 451 GKLADCSQN-------IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
            KL DC  +         + T LFI EGDSA GS  +AR+   QAV  LRGK LN     
Sbjct: 384 KKLRDCRVHFIDQKKDNRYETTLFITEGDSASGSLTKARDVQTQAVFSLRGKPLNCYKLT 443

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            + +  N++   L  AL          E+LRY K++I TDADVDG HI  LL+TFF Q  
Sbjct: 444 KKVVYENEEFNLLQHALDIE----DGIENLRYNKIVIATDADVDGMHIRLLLMTFFLQFF 499

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
            D+++Q HL+++  PLFR+    K+VY + E+ KQ+ ++        K EI+RFKGLGE+
Sbjct: 500 PDVVKQGHLYVLETPLFRVRNKKKTVYCYSEKEKQRAIKSLG----SKPEITRFKGLGEI 555

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
              +  +     +      V +     S     D +   MG    +R KFI + 
Sbjct: 556 SPDEFGQFIG--SNMRAEPVSL----RSETSIDDVLAYYMGKNTADRQKFIVDN 603


>gi|255689861|ref|ZP_05413536.1| DNA topoisomerase 4 subunit B [Bacteroides finegoldii DSM 17565]
 gi|260624466|gb|EEX47337.1| DNA topoisomerase 4 subunit B [Bacteroides finegoldii DSM 17565]
          Length = 625

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 188/673 (27%), Positives = 299/673 (44%), Gaps = 76/673 (11%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----EKALHHLFSEVIDNAMDEV 89
             + + +  Y   +IR L  +E VR RPGMYIG        E  ++ L  EVIDN++DE 
Sbjct: 8   PVDNNDAVEYTDDNIRHLSDMEHVRTRPGMYIGRLGDGAHAEDGIYVLLKEVIDNSIDEF 67

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
                  IE+ ++ N  ++V D GRGIP     +          ++ L+ GGK+D+  ++
Sbjct: 68  KMQAGKKIEIIVEENLRVSVRDYGRGIPQGKLIE---------AVSMLNTGGKYDSKAFK 118

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
            S GL+GVG+  VNALS    V   R   +    FS+G  L+   +        GT I F
Sbjct: 119 KSVGLNGVGVKAVNALSSRFEVRSYRDGKVRIATFSKGELLADETQN--TEEDNGTYIFF 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD  +F +   F    +  M ++  YL+  +   ++  +                  GL
Sbjct: 177 EPDNTLFLNY-SFKPEFIETMLRNYTYLNTGLAIIYNGHRI-------------LSRNGL 222

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
              L   +    L       G+          +E A     +   E  S+ N   T +GG
Sbjct: 223 VDLLNDNMTATGLYPIIHLKGE---------DIEIAFTHTGQYGEEYYSFVNGQHTTQGG 273

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           TH+S  +  + R IK++          ++   D+    V  ++V + EP F  QTKTKL 
Sbjct: 274 THQSAFKEHIARTIKEFFN-------KNMDYTDIRNGLVAAIAVNVEEPIFESQTKTKLG 326

Query: 389 SLDAQR-------TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           S +           V + ++   D++L +N   A  + + + E  +ER       ++ R+
Sbjct: 327 STNMAPGGITVNKYVGDFIKLEVDNFLHKNADIAETIQQKIQESEKERKAIAGVTKLARE 386

Query: 442 TAIRKLRLPGKLADCSQNIAHGT--------ELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            A +      KL DC  ++             +FI EGDSA GS  ++R+ + QAV  LR
Sbjct: 387 RAKKANLHNRKLRDCRIHLNDPKGKGLEEESCIFITEGDSASGSITKSRDVTTQAVFSLR 446

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIAS 553
           GK LN      + +  N++   L  AL          + LRY KVI+ TDADVDG HI  
Sbjct: 447 GKPLNSFGLTKKVVYENEEFNLLQAALNIEDGL----DGLRYNKVIVATDADVDGMHIRL 502

Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613
           L++TFF Q   DLI++ H++++  PLFR+    K++Y + +E +   +EE   +     E
Sbjct: 503 LMITFFLQFFPDLIKKGHVYILQTPLFRVRNKKKTIYCYSDEERINAIEELSPN----PE 558

Query: 614 ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKF 673
           I+RFKGLGE+   + K          L +V + K        ++ +   MG    ER  F
Sbjct: 559 ITRFKGLGEISPDEFKHFIG--KDMRLEQVTLRK----TDAVKELLEFYMGKNTMERQNF 612

Query: 674 IQERASFIDDVGT 686
           I +     +D+ +
Sbjct: 613 IIDNLVIEEDLAS 625


>gi|149199675|ref|ZP_01876707.1| DNA topoisomerase IV subunit B [Lentisphaera araneosa HTCC2155]
 gi|149137192|gb|EDM25613.1| DNA topoisomerase IV subunit B [Lentisphaera araneosa HTCC2155]
          Length = 603

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 182/656 (27%), Positives = 296/656 (45%), Gaps = 68/656 (10%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEV 89
            A + A   YD   I+ L+ LE +R RPGMYIG           ++ L  EV+DN +DE 
Sbjct: 1   MAEKKAPAEYDEKQIQTLDPLEHIRKRPGMYIGRLGNGSNQNDGIYVLLKEVLDNCIDEF 60

Query: 90  IAGYANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148
           I  + N I++ +D   G     D GRGIP+           +   ++ ++ GGK+D + +
Sbjct: 61  IMNHGNKIDLKIDTEAGTFYTRDYGRGIPLG---------AVVDCVSKMNTGGKYDGNAF 111

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           E S GL+GVG   VNALS    V   R        F  G+ +S  E   K   + GT + 
Sbjct: 112 EFSVGLNGVGTKAVNALSAHFRVKSFRDGKFKEACFEEGVLVS--ENDGKTDEENGTEVE 169

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F P  +IF      D   + +     AYL+  +    +  K             FY   G
Sbjct: 170 FSPSREIFPKY-KIDLGFIDRRMWGYAYLNRGLSLYLNGQK-------------FYSRNG 215

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEG 327
           L+ +++ ++ +  L                   +E+         E    Y N   T++G
Sbjct: 216 LRDFIEKEINDEKLYDIIYH---------RDDRLEFGFCHTGNYGENYYSYVNGQYTNDG 266

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           GTH+   R  + +G+  YA         +    D+     G ++V ++EP F  QTK KL
Sbjct: 267 GTHQQAFREGILKGVNDYAG-------KNFDGSDVRDGLFGAVAVKVKEPIFESQTKNKL 319

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL 447
            + + +  V N ++     +L +N   A +LLE V    + R      +++ +    +  
Sbjct: 320 GNTEIRSEVVNKVKAFVTDFLHKNKNVADRLLEKVTLNEKMRKNITDLKKLAKDKQKKVS 379

Query: 448 RLPGKLADCSQNIAHGTE------LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
               KL DC  ++   +       +FI EGDSA GS    R+   QA+ PLRGK  N  +
Sbjct: 380 FKIPKLRDCKHHLNDKSTLGEESMIFITEGDSATGSMISCRDVLTQALFPLRGKPKNSHN 439

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
              E +  N+++  +++A+          +DLRY KVII TDAD DG HI +LLLT+F  
Sbjct: 440 MKREFVYKNEELYFMMKAINIEDSL----DDLRYAKVIIATDADQDGLHIRNLLLTYFLT 495

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
               L+   HL+++  P++R+    ++VY +DEE K + + +  +      EI+RFKGLG
Sbjct: 496 FFEGLVTNGHLYILETPIYRVRNKKETVYCYDEEEKDEAVAKLGR----GHEITRFKGLG 551

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           E+  ++  +         +++V I K    + D    ++  MG+   +R +FI + 
Sbjct: 552 EISPNEFGQFIG--EDMRIIQVNIEK----MSDIPHVLDFFMGSNTGDRKQFIMDN 601


>gi|282889676|ref|ZP_06298215.1| hypothetical protein pah_c004o013 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500250|gb|EFB42530.1| hypothetical protein pah_c004o013 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 612

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 188/650 (28%), Positives = 310/650 (47%), Gaps = 68/650 (10%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYAN 95
           +  YD SS++ L  LE +R+R GMYIG        +  ++ +  EVIDN++DE I  + N
Sbjct: 2   AKKYDESSVKTLGALEHIRLRSGMYIGRLGDGSHPDDGIYIMVKEVIDNSVDEFIMKHGN 61

Query: 96  LIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
            I + +D   G ++V D GRGIP+           +   ++ ++ G K+++  ++ S GL
Sbjct: 62  RIIIGVDPEQGLISVRDFGRGIPLGK---------VIDCVSQINTGAKYNDDVFQFSVGL 112

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           +GVG   VNALS    V   R+       FS+G  +   EK +K     GT + F PD +
Sbjct: 113 NGVGTKAVNALSSHFLVRSHREGKSMEAVFSQGKLIR--EKSQKTSEPDGTYVEFIPDKE 170

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     F+   + K     AYL+  +   ++     +E              GL   L 
Sbjct: 171 IFKKFR-FEPEYIQKRLWHYAYLNTGLILEYNGQDIYSE-------------NGLLDLLN 216

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
            ++    L     + GK          +E+A    +       S+ N   T +GGTH S 
Sbjct: 217 EEVTEDRLYEPLYYRGKL---------LEFAFLHTQSYGESYFSFVNGQYTSDGGTHLSA 267

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            R  + +G+ +Y+     K+  +    DL    VG ++V I++P F  QTK KL + + +
Sbjct: 268 FREGILKGVNEYS-----KK--NFQGVDLREGIVGTVAVRIKDPVFESQTKNKLGNTELR 320

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
             +   ++D   + L +N   A  ++E ++   + R      ++  ++   +      KL
Sbjct: 321 GPLVQEVKDAVVNMLYKNSSTANSIIERIVFNEKLRKELAAVKKEAKEKQKKISFKIPKL 380

Query: 454 ADCSQNIAHG------TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            DC  +          T +F+ EGDSA  S   +R+   QAV  LRGK LNV     +++
Sbjct: 381 RDCKYHAQDKADVGEKTMIFLTEGDSASASIVASRDPLTQAVFSLRGKPLNVHGMKIDQL 440

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N+++ +L+ AL          E+LRY+KVI+ TDADVDG HI +LL+TFF      L+
Sbjct: 441 YKNEEMFNLMSALNIE----DDIENLRYQKVILATDADVDGMHIRNLLITFFLTYFEGLV 496

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
              HLF++  PLF++    K++Y + EE + K +++ KK     IE++RFKGLGE+  ++
Sbjct: 497 LNGHLFILETPLFKVRNREKTLYCYSEEERDKAIKQLKK----GIEVTRFKGLGEISPNE 552

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
            K+         L+ V I+       D + +++  MG    +R +FI E 
Sbjct: 553 FKQFIG--KDIRLIPVTIS----LFSDIKTTLDFYMGKNTPKRKQFIMEN 596


>gi|313674757|ref|YP_004052753.1| DNA topoisomerase type iia subunit b region 2 domain protein
           [Marivirga tractuosa DSM 4126]
 gi|312941455|gb|ADR20645.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Marivirga tractuosa DSM 4126]
          Length = 619

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 180/658 (27%), Positives = 292/658 (44%), Gaps = 60/658 (9%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYA 94
           A   YD  SI+ L+  E +RMRPGMYIG      + +  ++ L  EVIDN++DE + G+ 
Sbjct: 2   AEFQYDEDSIKSLDWREHIRMRPGMYIGKLGDGSSPDDGIYVLVKEVIDNSIDEHMMGFG 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             IE+ +  +  + V D GRGIP+           +   ++ ++ GGK+D   ++ S GL
Sbjct: 62  KTIEIKI-TDQRVEVRDYGRGIPLGK---------VVDCVSKINTGGKYDTGAFQKSVGL 111

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           +GVG   VNALS+   V   R+      +F RG+ L+   +      + GT I F PD +
Sbjct: 112 NGVGTKAVNALSNYFKVQAFREGQTKVAEFQRGV-LTNDAQVTSSSGRNGTLIAFEPD-E 169

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
                  F    L +   + A+L+  +   ++ DK             F+   GL   L 
Sbjct: 170 TVFKNYHFIPGFLEEQMWNYAFLNSGLTINFNGDK-------------FHSANGLADLLD 216

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
            K +  +     I              +E A+    +   E  S+ N   T +GGTH + 
Sbjct: 217 RKSDEETNRYPIIHL--------KGEDIEMAMTHANQYGEEYYSFVNGQNTTQGGTHLTA 268

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            + A+ + I+ +     +   I       +   V       +     G           +
Sbjct: 269 FKEAIVKTIRDFYGKNYDPSDIRQAIVAAVAVRVQEPVFESQTKTKLGSQNVAPDGPTMR 328

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
             + + ++   D +L +NP  A  + + +++   ER      +++  + A +      KL
Sbjct: 329 TFINDFVKKALDDFLHRNPKTAEAIQKRIMQSERERKDMAGIKKLANERAKKANLHNKKL 388

Query: 454 ADC-------SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
            DC         +    T +FI EGDSA GS  ++R+   QAV  LRGK LN      + 
Sbjct: 389 RDCRVHYDDNKHDRKDDTMIFITEGDSASGSITKSRDVQTQAVFSLRGKPLNCYGKTKKL 448

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           +  N++   L  AL          E LRY KVII TDADVDG HI  LL+TFF Q   DL
Sbjct: 449 VYENEEFNLLQHALNIEEGL----EGLRYRKVIIATDADVDGMHIRLLLMTFFLQFFPDL 504

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           +   HL+++  PLFR+    +++Y + +E +++ +E+  K      EI+RFKGLGE+   
Sbjct: 505 VRDGHLYILDTPLFRVRNKKETIYCYSDEERRRAIEKIGKAA----EITRFKGLGEISPE 560

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           +  E  ++     L  + +N         +D +   MGT   ER +FI ++     D+
Sbjct: 561 EFGE-FIN-ENIKLDPIILNNQTK----IKDLLTFYMGTNTMERQQFIIDKLRVEKDL 612


>gi|46445984|ref|YP_007349.1| DNA topoisomerase IV subunit B [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399625|emb|CAF23074.1| putative DNA gyrase (topoisomerase) chain B [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 606

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 184/657 (28%), Positives = 311/657 (47%), Gaps = 68/657 (10%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-----KALHHLFSEVIDNAMDEVIAGYAN 95
           + NYD S+++ L+ L  +R+R GMYIG   +       ++ +  EV+DN++DE I  +  
Sbjct: 2   AKNYDESTVKTLDALAHIRLRSGMYIGRLGDGTNPDDGIYIMLKEVVDNSVDEFIMKHGK 61

Query: 96  LIEVSLDGNGF-LTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
            I + LD +   ++V D GRGIP+           +E + + ++ G K+++  ++ S GL
Sbjct: 62  KIIIELDEDLSRVSVRDFGRGIPLGK--------VVECV-SQINTGAKYNDDVFQFSVGL 112

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           +GVG   VNALS    V   R        FS+G+     EKK K + + GT + F PDP+
Sbjct: 113 NGVGTKAVNALSSHFVVKSYRDGEFVEAHFSQGLLK--QEKKGKTKEENGTYVEFIPDPE 170

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     F    +LK     AYL+  +   ++ ++                  GL   L 
Sbjct: 171 IFKKYR-FQKEYILKRIWHYAYLNTGLILQFNGEEI-------------QSKYGLLDLLN 216

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
            ++    L     + GK          +E A            S+ N   T +GGTH S 
Sbjct: 217 AEVTEDRLYEPIHYRGKF---------LELAFLHTHSYGESYFSFVNGQYTSDGGTHLSA 267

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            R  + +G+ ++      K+  +    D+    VG + V +++P F  QTK KL + + +
Sbjct: 268 FREGILKGVNEFT-----KK--NFQGVDVREGIVGTILVKVKDPIFESQTKNKLGNNELR 320

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
             +   +++   + L ++P  A +L+E ++   + R      ++  ++   +      KL
Sbjct: 321 APIVQEVKEAVVNLLHKHPDVANRLVERIVFNEKLRKELASVKKEAKEKQKKISFKIPKL 380

Query: 454 ADCSQNIAH------GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            D   +          T +F+ EGDSA  S   +R+   QAV  LRGK LNV     +++
Sbjct: 381 RDSKYHYQDRSVHSENTMIFLTEGDSASASVVASRDPLIQAVYSLRGKPLNVFGMKLDQL 440

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N+++ +L+ AL          E LRY KVI+ TDADVDG HI +L++TFF      L+
Sbjct: 441 YKNEEMFNLMNALNIE----DEIEKLRYNKVILATDADVDGMHIRNLMITFFLTYFEGLV 496

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
              HL+++  PLF++    +++Y ++EE K K + + KK     +E++RFKGLGE+  S+
Sbjct: 497 LNGHLYILETPLFKVRNKVQTIYCYNEEEKNKAVVKLKKQ----VEVTRFKGLGEISPSE 552

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
            K+         L+ V I    +S  D + ++   MG    ER +FI +     D++
Sbjct: 553 FKQFIG--KDIRLIPVTI----HSFSDIKSTLQFYMGKNTPERKQFIMQNLINEDEI 603


>gi|119952842|ref|YP_945051.1| DNA topoisomerase IV subunit B [Borrelia turicatae 91E135]
 gi|119861613|gb|AAX17381.1| DNA gyrase subunit B [Borrelia turicatae 91E135]
          Length = 598

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 188/649 (28%), Positives = 308/649 (47%), Gaps = 67/649 (10%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYAN 95
           +++YD S I  L  LE +R+R GMYIG        +  ++ L  E+IDN++DE I G+  
Sbjct: 3   TNSYDESKIVTLSSLEHIRLRSGMYIGRLGDGSNIDDGIYILVKEIIDNSIDEFIMGHGK 62

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I +    N  ++V D GRGIP+           +E + + ++ G K+++  ++ S GL+
Sbjct: 63  EILIK-KENNIISVRDYGRGIPLGK--------VVESV-SVINTGAKYNDDVFQFSVGLN 112

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG   VNALS    V   R    F   FS+G  ++ +E   K   + GT I F  D +I
Sbjct: 113 GVGTKAVNALSSNFLVRSIRDGNFFEAIFSKGNLINTIE--GKSNEQNGTYIEFLADTEI 170

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           FG    +    L +     A L+  +K  ++              + F    GL  ++  
Sbjct: 171 FGKY-KYSEDFLRRRFFHYACLNKGLKINYND-------------QIFQSDNGLLDFINA 216

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
           +++   L+   ++            T+E+A +          S+ N   T +GGTH++G 
Sbjct: 217 EIKGEDLLYDFVYYSS--------KTLEFAFSHTNNYGETYFSFVNGQYTSDGGTHQTGF 268

Query: 335 RVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           R    R I  +      K+  S    D+    +  LSV I++P F  QTK KL +++ + 
Sbjct: 269 REGFARAINDF-----LKKTYSST--DIREGLIATLSVKIKDPIFESQTKNKLGNIETRS 321

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454
           +V   ++      L ++   A  +   V++    R      R+  ++ A +      KL 
Sbjct: 322 SVAKEVQRIILEILYKDKTLAKAIENKVVDNERLRKELSSVRKEAKERAKKISFKIPKLK 381

Query: 455 DCSQN------IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           DC  +       +  T +F+ EGDSA GS    R+   QA+  LRGK  N+      +I 
Sbjct: 382 DCKFHFNEKSMHSDSTMIFLTEGDSATGSMVSCRDVYTQAIFSLRGKPQNMFEKNKSEIY 441

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            N+++ +++ ALG         E+LRY K++I TDAD DG HI +LLLTFF     DL+ 
Sbjct: 442 KNEELYNMMVALGIE----ESIENLRYNKIVIATDADFDGFHIRNLLLTFFLTYFEDLVL 497

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
             H++++  PLFR+   + ++Y + EE KQK + E K       E++RFKGLGE+  S+ 
Sbjct: 498 NGHMYILETPLFRVRNKSSTIYCYFEEEKQKAVRELKN-----PEVTRFKGLGEISPSEF 552

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           +   +D +   L +V    DL ++K+ ++ +   MG    ER  FI E 
Sbjct: 553 RS-FIDVSNIRLTKV----DLVNIKEIKEHLGFYMGPNTPERRNFIMEN 596


>gi|45382161|ref|NP_990122.1| DNA topoisomerase 2-alpha [Gallus gallus]
 gi|13959708|sp|O42130|TOP2A_CHICK RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
           topoisomerase II, alpha isozyme
 gi|6714553|dbj|BAA22539.2| DNA topoisomeraseII_alpha [Gallus gallus]
          Length = 1553

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 137/698 (19%), Positives = 257/698 (36%), Gaps = 71/698 (10%)

Query: 14  PQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-- 71
           P          +  +     A    S    Y          LE + +RP  YIG  +   
Sbjct: 7   PAPLRPLHDNPRLPKAD--GAQKRLSVERIYQKK-----TQLEHILLRPDTYIGSVETVT 59

Query: 72  --------------------KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTV 109
                                 L+ +F E++ NA D        + I+V++D  N  ++V
Sbjct: 60  QQMWVFDEDVGLNCRDVTFVPGLYKIFDEILVNAADNKQRDKSMSCIKVTIDPENNTISV 119

Query: 110 VDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDEL 169
            +NG+GIPV  H K        +I   L     +D+   +++GG +G G  + N  S + 
Sbjct: 120 WNNGKGIPVVEH-KVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKF 178

Query: 170 HVT--VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAA 225
            V         +F Q ++  +  +     +    +  T +TF+PD   F          A
Sbjct: 179 TVETACREYKKLFKQTWTDNMGKAGEMTLKHFDGEDYTCVTFQPDLSKFKMTILDKDIVA 238

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
            + +     A  +  VK   +  +   +              G ++Y+   L+++   + 
Sbjct: 239 LMSRRAYDIAGSTKDVKVFLNGKRLPVK--------------GFRSYVDLYLKDKVDETG 284

Query: 286 EIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKY 345
                  E+        E  +   E+  +  S+ N+I T +GG H   +   +   +   
Sbjct: 285 NALKVIHEE---VNSRWEVCLTLSEKGFQQVSFVNSIATTKGGRHVDYVADQIVTKLID- 340

Query: 346 AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
               +NK  + +    +       ++  I  P F  QTK  +            L + F 
Sbjct: 341 VVKKKNKNGVGVKPFQVKNHMWIFVNSLIENPTFDSQTKENMTLQAKSFGSTCKLSEKFI 400

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTE 465
              V        +L WV  +++   +  K+    + T I+ +       D     +    
Sbjct: 401 KGAVG-CGIVESILNWVKFKAQ--TQLNKKCSAVKHTKIKGVPKLDDANDAGSKNSIDCT 457

Query: 466 LFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           L + EGDSA   A        R    V PLRGK+LNV  A  ++I  N +I ++++ +G 
Sbjct: 458 LILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKMLNVREASHKQIMENAEINNIIKIVGL 517

Query: 523 RTRSQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           + +  Y + +    LRY K++IMTD D DG+HI  LL+ F +     L+    L     P
Sbjct: 518 QYKKNYEDRESLKSLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHNFLEEFITP 577

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           + ++++  + +  +     ++     + +     +I  +KGLG   + + KE   D  + 
Sbjct: 578 IIKVSKNKEEIPFYSIPEFEEWKSSTQNYN--SWKIKYYKGLGTSTSKEAKEYFADMARH 635

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
            +                 + +K    K +ER +++  
Sbjct: 636 RIGF--KYSGPEDDAAITLAFSK---KKVEERKEWLTN 668


>gi|26984133|gb|AAN85207.1| DNA topoisomerase II [Nicotiana tabacum]
 gi|26984168|gb|AAN85208.1| DNA topoisomerase II [Nicotiana tabacum]
          Length = 1482

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 146/701 (20%), Positives = 261/701 (37%), Gaps = 71/701 (10%)

Query: 19  SSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-------- 70
           +S+KL        + A   ++    Y          LE + +RP  YIG  +        
Sbjct: 2   ASKKLPLQSSSNANIATNGKTIEQTYQKK-----TQLEHILLRPDTYIGSVEKHTQTLWV 56

Query: 71  -------------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRG 115
                           L+ +F E++ NA D        + +EV +D    F++V +NG G
Sbjct: 57  WENDKMTHRPVTYVPGLYKIFDEILVNAADNKQRDPKMDAVEVVIDPEQNFISVYNNGDG 116

Query: 116 IPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR 175
           IPVE H +       E+I   L     +D++  + +GG +G G  + N  S E  +  A 
Sbjct: 117 IPVEIHQE-EGVYVPELIFGHLLTSSNYDDAEKKTTGGRNGYGAKLTNIFSTEFVIETAD 175

Query: 176 QNTIFSQK--FSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKA--GFDAARLLKM 230
                  K  FS  +         K + ++  T+++ +PD   F  +       A + K 
Sbjct: 176 GKRQKKYKQVFSSNMGKKGEPIITKCKASENWTKVSSKPDLAKFNMEHLEEDVVALMRKR 235

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
                   G+       ++ I  K      + F      K                    
Sbjct: 236 VIDLGGCLGKTVKVKLNEQRIPVKSFEEYCKLFLDSTDAKREFLKVT------------- 282

Query: 291 KTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
                       E  ++  E   +  S+ N+I T +GGTH   +   +   I     + +
Sbjct: 283 ----DADGLLRWEICVSLSEGQFQQVSFVNSIATIKGGTHVDYVANQIANHI--MGAVIK 336

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
             +  +I +  +       ++  I  P F  QTK  L    +    +  L+  F   + +
Sbjct: 337 KNKNANIKAHAVKNHLWMFVNALIDNPAFDSQTKETLTLRQSSFGSKCELQPDFLKKVEK 396

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           N      LL W    ++ +  +  ++   +K+   K+       D     +    L + E
Sbjct: 397 NIGIVETLLSW----ADFKNSKDLKKTDGKKSEKVKVEKLEDANDAGGRNSEKCTLILTE 452

Query: 471 GDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           GDSA   A    +   R +  V PLRGK+LNV  A  +++  N++I  + + LG +T  +
Sbjct: 453 GDSAKALAMAGISVVGRDHYGVFPLRGKLLNVREASHKQVSENKEIEAIKKILGLQTGKE 512

Query: 528 YREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK-HLFLISPPLFRITQG 585
           Y     LRY  ++IMTD D DG+HI  LL+ F +     L++    L     P+ + T  
Sbjct: 513 YDSVKSLRYGHLMIMTDQDHDGSHIKGLLINFIHTFWPSLLKVPSFLIEFITPIVKATHK 572

Query: 586 T-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644
           + K +  +     +   +    +      I  +KGLG   + + KE   D  K    +  
Sbjct: 573 SGKILSFYTMPEYESWRKSLGANS-SGWSIKYYKGLGTSTSKEGKEYFQDLQKHR--KDF 629

Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQ--ERASFIDD 683
           I  D    +  + + +K    K + R  +++  E  + +D 
Sbjct: 630 IWADNQDGESIELAFSK---KKIEARKNWLRQFEPGTHLDQ 667


>gi|2909391|emb|CAA76312.1| DNA topoisomerase II alpha [Cricetulus longicaudatus]
          Length = 1526

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 138/690 (20%), Positives = 266/690 (38%), Gaps = 69/690 (10%)

Query: 21  EKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD---------- 70
            +  +  +  +  A    S    Y          LE + +RP  YIG  +          
Sbjct: 10  NENMQMNKKKNEDAKKRLSIERIYQKK-----TQLEHILLRPDTYIGSVELVTQQMWVYD 64

Query: 71  ------------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGI 116
                          L+ +F E++ NA D        + I V++D  N  +++ +NG+GI
Sbjct: 65  EDVGINYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGI 124

Query: 117 PVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTV--A 174
           PV  H K        +I   L     +D+   +++GG +G G  + N  S    V     
Sbjct: 125 PVVEH-KVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTRFTVETASK 183

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLLKMTQ 232
               +F Q +   +  +   + +    +  T ITF+PD   F  +       A +++   
Sbjct: 184 EYKKMFKQTWMDNMGRAGDMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAY 243

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             A  +  VK   + +K   +              G ++Y+   L+++   +        
Sbjct: 244 DIAGSTKDVKVFLNGNKLPVK--------------GFRSYVDMYLKDKLDETGNALKVVH 289

Query: 293 EKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK 352
           E+        E  +   E+  +  S+ N+I T +GG H   +   +   +       +NK
Sbjct: 290 EQ---VNPRWEVCLTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVSKLVD-VVKKKNK 345

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +++ +  +       ++  I  P F  QTK  +            L + F    +   
Sbjct: 346 GGVAVKAHQVKNHMWIFVNALIENPSFDSQTKENMTLQAKSFGSTCQLSEKFIKAAIG-C 404

Query: 413 IEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
                +L WV  +++  ++  K+    +   I+ +       D     +    L + EGD
Sbjct: 405 GIVESILNWVKFKAQ--IQLNKKCSAVKHNRIKGIPKLDDANDAGSRNSTECTLILTEGD 462

Query: 473 SAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           SA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +G + +  Y 
Sbjct: 463 SAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKNYE 522

Query: 530 EED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG 585
           +ED    LRY K++IMTD D DG+HI  LL+ F +     L+  + L     P+ ++++ 
Sbjct: 523 DEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKN 582

Query: 586 TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645
            + +  +     ++       H   K ++  +KGLG   + + KE   D  +   ++ + 
Sbjct: 583 KQELAFYSLPEFEEWKSSTPNH--KKWKVKYYKGLGTSTSKEAKEYFADMKRHR-IQFKY 639

Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQ 675
           +           + +K    + D+R +++ 
Sbjct: 640 S-GPEDDAAISLAFSK---KQVDDRKEWLT 665


>gi|301626919|ref|XP_002942632.1| PREDICTED: DNA topoisomerase 2-alpha, partial [Xenopus (Silurana)
           tropicalis]
          Length = 1458

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 141/700 (20%), Positives = 267/700 (38%), Gaps = 73/700 (10%)

Query: 12  LPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE 71
             P     ++ + K  +  +       S    Y          LE + +RP  YIG  + 
Sbjct: 3   TDPLQPLENKTVGKVKKSDN----KRLSVERIYQKK-----TQLEHILLRPDTYIGSVEP 53

Query: 72  ----------------------KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFL 107
                                   L+ +F E++ NA D        + I+++++     +
Sbjct: 54  VTQQMWVFDEDEGLNCRDVTFVPGLYKIFDEILVNAADNKQRDPTMSCIKITINPESNTV 113

Query: 108 TVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSD 167
           +V +NG+GIPV  H K        +I   L     +D+   +++GG +G G  + N  S+
Sbjct: 114 SVWNNGKGIPVVEH-KVEKVFVPALIFGQLLTSSNYDDDQKKVTGGRNGYGAKLCNIFSN 172

Query: 168 ELHVT--VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFD 223
           +  V         +F Q ++  +  +   K +    +  T ITF+PD   F  +      
Sbjct: 173 KFTVETACREYKKVFKQTWTDNMSDAADAKIKPFDGEDYTCITFQPDLSKFKMQILDKDI 232

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
            A + +     A  S  VK   +  +                  G ++Y+   L+N+   
Sbjct: 233 VALMSRRAYDVAGSSKGVKVFLNGKRLPI--------------SGFRSYVDLYLKNKLDE 278

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIK 343
           +        E         E  +   E+  +  S+ N+I T +GG H   +   +   + 
Sbjct: 279 TGNPLKVMHEL---VNDRWEICLTMSEKGFQQISFVNSIATTKGGRHVDYVADQIIAKLI 335

Query: 344 KYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDP 403
           +     +NK  I++    +       ++  I  P F  QTK  +         +  L + 
Sbjct: 336 E-VVKKKNKGGIAVKPFQVKNHMWVFVNSLIENPTFDSQTKENMTLQSKSFGSKCTLSEK 394

Query: 404 FDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHG 463
           F      N      +L WV  +++   +  K+    + T I+ +       D     +  
Sbjct: 395 FIK-GATNCGIVESILNWVKFKAQ--TQLNKKCSSVKHTKIKGIPKLDDANDAGSRNSLD 451

Query: 464 TELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
             L + EGDSA   A        R    V PLRGK+LNV  A  ++I  N +I ++++ +
Sbjct: 452 CTLILTEGDSAKTLAVSGLGVVGRDRYGVFPLRGKLLNVREASHKQIMENAEINNIIKIV 511

Query: 521 GCRTRSQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           G + +  Y + +    LRY KV+IMTD D DG+HI  LL+ F +     L++ + L    
Sbjct: 512 GLQYKKNYDDNESLKTLRYGKVMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHRFLEEFI 571

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
            P+ ++T+  + +  +     ++       H     +I  +KGLG   + + KE   D  
Sbjct: 572 TPIIKVTKSKQELSFYSIPEFEEWKNNTDSH--KTWKIKYYKGLGTSTSKEAKEYFSDME 629

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           +   +  +    ++       + ++    K D+R +++  
Sbjct: 630 RHR-IPFKYEGPIDDAA-ITLAFSR---KKVDDRKEWLTN 664


>gi|154270939|ref|XP_001536323.1| DNA topoisomerase 2 [Ajellomyces capsulatus NAm1]
 gi|150409546|gb|EDN04990.1| DNA topoisomerase 2 [Ajellomyces capsulatus NAm1]
          Length = 1808

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 163/730 (22%), Positives = 289/730 (39%), Gaps = 84/730 (11%)

Query: 6   IDLFSTLPPQSQGSSEKLKKSGEIPDSP-------------AFANQSASDNYDASSIRIL 52
             L S  PP +   ++K   S + P+ P             A A +  S+ Y     + L
Sbjct: 87  ASLLSATPPNAAAKAKKSAGSKKPPNKPLENVENESFGMDGATAPKENSEKY-----QKL 141

Query: 53  EGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDNAMDEV 89
             LE +  RP  YIG  +                          L+ +F E++ NA D  
Sbjct: 142 TQLEHIIKRPDTYIGSIERSTNQMWVYNMQSGSMEFRVVSYVPGLYKIFDEILVNAADNK 201

Query: 90  IAG-YANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST 147
            +    + I V+LD   G ++V +NGRGIP+E H K       E++   L +   +D++ 
Sbjct: 202 HSDKNMDEIRVTLDRESGQISVWNNGRGIPIEIHAK-EKVYIPELVFGHLLSSSNYDDNQ 260

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQ--NTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
            +++GG +G G  + N  S E  +  A       + Q ++  +      K    +    T
Sbjct: 261 QKVTGGRNGYGAKLCNIFSTEFTLETADSKLKKKYKQTWTDNMSKMGKPKITDCKGDDYT 320

Query: 206 RITFRPD-PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           ++TF PD  K   D    D   L+K       L+G  K     +          +  + Y
Sbjct: 321 KVTFTPDFKKFGMDGIDDDFEALVKRR--VYDLAGTCKVTVKLNGSRIPIRNFKQYMQMY 378

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILT 324
                K   +   +++S I ++                E   A  + + +  S+ N+I T
Sbjct: 379 TNAIKKERGEEAAKDKSEIITD----------NPDPRWEIGFAVSDGSFQQVSFVNSIAT 428

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
             GG+H + +   +   +   A   +NK   ++    +       ++  I  P F  QTK
Sbjct: 429 TSGGSHVNSVADQICNKLVD-AVKKKNKTGATLKPAQIRNHIFVFVNAQIVNPAFTSQTK 487

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI 444
            +L +  +Q   +  L D F   +++  +        ++  +E++  +  ++    + + 
Sbjct: 488 EQLTTKPSQFGSKCVLSDEFLKKILKTQVMEN-----ILHFAEKKADQILKKTDGNRRSR 542

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVAS 501
                            H   L + EGDSA G A   R         V PLRGK+LNV  
Sbjct: 543 MNNPKLTDANKAGTKEGHHCTLILTEGDSAKGLAMAGRAIVGPDLFGVFPLRGKLLNVRD 602

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  ++I  N +I ++   LG + + +Y +   LRY  ++IMTD D DG+HI  LL+ FF 
Sbjct: 603 ASVDQISKNAEIQNIKNFLGLQHKKEYTDTKGLRYGHLMIMTDQDHDGSHIKGLLINFFQ 662

Query: 561 QEMYDLIEQK-HLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
                L++    L     P+ ++ +G     T S      +  +   +E   H K   E 
Sbjct: 663 VAFPSLLKIPQFLIEFITPIVKVWKGDPKNPTISKVFFTMQEYKTW-QEIHGHDKR-WEK 720

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
             +KGLG       +    D +K  L +  + +D  + +    + +K    KADER +++
Sbjct: 721 KYYKGLGTSSTDDAEIYFRDLDKH-LKQFHVMQDHEA-ELIDLAFSK---KKADERKEWL 775

Query: 675 QE--RASFID 682
           ++    +F+D
Sbjct: 776 RQFKPGTFLD 785


>gi|112983266|ref|NP_001037009.1| DNA topoisomerase 2 [Bombyx mori]
 gi|6094494|sp|O16140|TOP2_BOMMO RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II; Short=TOPOII
 gi|2338552|gb|AAB67168.1| topoisomerase II [Bombyx mori]
          Length = 1547

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 137/709 (19%), Positives = 271/709 (38%), Gaps = 79/709 (11%)

Query: 17  QGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE----- 71
              S   +     P        +    Y   S      LE + +RP  YIG  +      
Sbjct: 9   NKMSSPKQNGTGEPAPAKGQKGAIEKIYQKKS-----QLEHILLRPDTYIGSVERATETM 63

Query: 72  -----------------------KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGF 106
                                    L+ ++ E++ NA D        ++I++ ++     
Sbjct: 64  WVYDKVKECMMQKELTSVPDCSFPGLYKIYDEILVNAADNKQRDPKMDVIKIDINQETNT 123

Query: 107 LTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALS 166
           ++V +NG GIPV  H K        +I   L     +++   +++GG +G G  + N  S
Sbjct: 124 ISVYNNGSGIPVVMH-KDEKMYVPTMIFGHLLTSSNYNDEEEKVTGGRNGYGAKLCNIFS 182

Query: 167 DELHVTVARQNTIFSQKFSRG--IPLSPLEKKEKV-RNKRGTRITFRPD--PKIFGDKAG 221
            +  V  A +      K + G  +  +   K +   ++   T+I F PD           
Sbjct: 183 TKFTVETASKQYKKHFKQTWGSNMTKASEPKIKDSGKDDDFTKIVFSPDLAKFKMEKLED 242

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
                + +     A  S  VK   + ++    K+              K Y+   ++ + 
Sbjct: 243 DIVLLMSRRAYDVAASSQGVKVYLNGERLKINKF--------------KDYVDLYIKGKD 288

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
             + +      EK        E A+   +   +  S+ N+I T +GG H   +  ++ + 
Sbjct: 289 DENGQPLKVVYEK---VSDRWEVALTISDMGFQQVSFVNSIATTKGGKHVDTVADSVVKN 345

Query: 342 IKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
           + +     +NK  ++I    +       ++  I  P F  QTK  +         +  L 
Sbjct: 346 VLE-VLKKKNKGGVNIKPYQVKTHMWLFVNCLIVNPTFDSQTKENMTLQAKSFGSKCNLS 404

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNI 460
           + F   + +       L+E V+  ++ + + +  +    +++ ++ +       D     
Sbjct: 405 EKFITAVTKC-----GLVESVLTWAKFKAQDQLVKASGKKQSKLKGIPKLEDANDAGTKN 459

Query: 461 AHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           AH   L + EGDSA   A    +   R +  V PL GK LNV  A  +++  N +I +L+
Sbjct: 460 AHLCTLILTEGDSAKTLAVSGLSVVGRDHYGVFPLEGKPLNVRDASHKQVLENVEINNLI 519

Query: 518 QALGCRTRSQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
           + LG + + +Y   D    LRY KV+IM D D DG+HI  L++ F +    +L++   L 
Sbjct: 520 KILGLQYKKKYNSVDDLKTLRYGKVMIMADQDQDGSHIKGLIINFIHHNWPELLKLPFLE 579

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
               P+ + T+  K +  +     ++  +E + H      I  +KGLG   + + KE   
Sbjct: 580 EFITPIVKATKKDKEISFYSLPEFEEWKKETENHHT--YNIKYYKGLGTSTSKEAKEYFQ 637

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           + ++   +R + +   +     + + +K     AD+R +++      + 
Sbjct: 638 NMDRHR-IRFKYSGPTDD-HHIELAFSK---KGADQRKEWLTNHMDEVK 681


>gi|317030635|ref|XP_001392968.2| DNA topoisomerase 2 [Aspergillus niger CBS 513.88]
          Length = 1707

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 154/729 (21%), Positives = 282/729 (38%), Gaps = 85/729 (11%)

Query: 8   LFSTLPPQSQGSSEKLKKSGEI--------------PDSPAFANQSASDNYDASSIRILE 53
           + S  PP+    +    K G                       + +AS+ Y     + L 
Sbjct: 86  VLSHTPPKKAKKTAGPSKKGGAKPLADVENESFGKDDSVEPGKSNNASEKY-----QKLT 140

Query: 54  GLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDNAMDEVI 90
            LE +  RP  YIG  +                          L+ +F E++ NA D   
Sbjct: 141 QLEHIIKRPDTYIGSVERTTQQMWVYSSESDGMEYREVSYVPGLYKIFDEIVVNAADNKQ 200

Query: 91  AG-YANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148
                + I V++D   G ++V +NGRGIP+E H K       E+I   L     +D++  
Sbjct: 201 NDENMSEIRVTVDRESGVISVWNNGRGIPIEMHAK-EKIYVPELIFGHLLTSSNYDDTQQ 259

Query: 149 EISGGLHGVGISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +++GG +G G  + N  S E  +      Q   + Q ++  +      K  + + +  T+
Sbjct: 260 KVTGGRNGFGAKLCNVFSTEFSIETQDSSQKKKYRQTWTENMTKIGKAKITEAKGEDYTK 319

Query: 207 ITFRPDP-KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           +TF+PD  K   D    D   L+K        + +V    +  +     +        Y 
Sbjct: 320 VTFKPDYAKFGMDGMDDDFEALVKRRVYDLAGTAKVNVKLNGTRIPIRGFKK------YM 373

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTD 325
               K   + + +       EI T             E   A  +   +  S+ N+I T 
Sbjct: 374 EMYTKAIRKERGDTGPAPKDEIITCS------PDPRWEVGFAVSDGAFQQVSFVNSIATT 427

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
            GGTH + +   +   + +     +NK   ++ +  +       ++  I  P F  QTK 
Sbjct: 428 SGGTHVNYIADQICNRLAE-QVKKKNKNGATLKTAQIRNHIFIFVNALIVNPAFTSQTKE 486

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIR 445
           +L +  +Q   +  L + F   +++     T ++E ++  ++++  +  ++    + +  
Sbjct: 487 QLTTKASQFGSKCVLDEDFYKKILK-----TAVMENILHFAQQKADQMLKKTDGGRRSRM 541

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASA 502
                           H   L + EGDSA G A   R         V PLRGK+LNV  A
Sbjct: 542 NNPKLTDANKAGTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDA 601

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
             ++I  NQ+I ++   LG + + +Y +   LRY  ++IMTD D DG+HI  LL+ F   
Sbjct: 602 SFDQISKNQEIQNIKNFLGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINFLQA 661

Query: 562 EMYDLIEQK-HLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615
           +   L++    L     P+ ++ +G     TK          +   EE +   +   +  
Sbjct: 662 QFPSLLKIPEFLIEFITPIVKVWKGDPKNPTKQRSFFTMPEYEAWAEEHQ--HERGWDHK 719

Query: 616 RFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675
            +KGLG       +    D ++       +    N  +  + + +K    KADER ++++
Sbjct: 720 YYKGLGTSTTEDAQVYFRDLDRHLKEFHTMQD--NEAELIELAFSK---KKADERKEWLR 774

Query: 676 E--RASFID 682
           +    +F+D
Sbjct: 775 QFKPGTFLD 783


>gi|313204490|ref|YP_004043147.1| DNA topoisomerase type IIia subunit b region 2 domain protein
           [Paludibacter propionicigenes WB4]
 gi|312443806|gb|ADQ80162.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Paludibacter propionicigenes WB4]
          Length = 624

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 196/667 (29%), Positives = 304/667 (45%), Gaps = 81/667 (12%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +Y  S+I  LEGLE VR RPGMYIG        +  ++ L  EV+DN +DE   G    I
Sbjct: 12  DYGDSNIITLEGLEHVRRRPGMYIGKLGDGSHVDDGIYVLLKEVLDNCIDEYRMGAGKAI 71

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V +  +G + V D GRGIP+    +          ++ ++ GGK+D+  ++ S GL+GV
Sbjct: 72  DVRV-QDGHVEVRDFGRGIPLGKMVE---------AVSIMNTGGKYDSKAFKKSVGLNGV 121

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G   VNALS    V   R       +F +G  +S  +        RGT I F PD  +F 
Sbjct: 122 GTKAVNALSSTFVVQSFRDGQSRKAEFQKGKLVSDSDIFADNTE-RGTLIYFVPDNTLFE 180

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   +    +  M ++ AYL+  +   ++  K                  GL   L   +
Sbjct: 181 NYL-YKEDYIETMLRNYAYLNTGLTINFNGKKI-------------LSKNGLTDLLNENI 226

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
             + L       G+          +E A    ++   E  S+ N   T +GGTH+S  R 
Sbjct: 227 TAQPLYPIIHLKGE---------DIEIAFTHSDQYGEEYYSFVNGQHTTQGGTHQSAFRE 277

Query: 337 ALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA---- 392
           A+ R IK++          ++   D+    +  +++ + EP F  QTKTKL S D     
Sbjct: 278 AVARTIKEFYS-------KNMEVGDIRNGIIAAVAISVEEPIFESQTKTKLGSRDMAKDG 330

Query: 393 ---QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
               + + + L+   D+YL +N   A  LL+ + +  +ER       ++ R+ A +    
Sbjct: 331 VSVNKFISDFLKKELDNYLHRNSETANILLQKIQDSEKERKAIAGVTKLARERAKKVNLH 390

Query: 450 PGKLADCSQNIA-------------HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
             KL DC  +               H + +FI EGDSA GS  ++R+ + QAV  LRGK 
Sbjct: 391 NKKLRDCRVHFNDSLTKDDAKNAAIHNSCIFITEGDSASGSITKSRDVNTQAVFSLRGKP 450

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556
           LN      + +  N++   L  AL          E+LRY KVI+ TDADVDG HI  LL+
Sbjct: 451 LNSYGLTKKIVYENEEFNLLQAALNIE----EGVENLRYNKVIVATDADVDGMHIRLLLI 506

Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616
           TFF Q   DLI++ H++++  PLFR+    ++ Y + EE +   + +   +     EI+R
Sbjct: 507 TFFLQFFPDLIKKGHVYILQTPLFRVRNKKETFYCYSEEERLASMAKVGSN----PEITR 562

Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           FKGLGE+   + K          L +V + K+       QD ++  MG    ER  FI +
Sbjct: 563 FKGLGEISPDEFKHFIG--KDMRLDQVTLKKE----DAVQDLLSFYMGKNTSERQNFIID 616

Query: 677 RASFIDD 683
                +D
Sbjct: 617 NLVVEED 623


>gi|312376011|gb|EFR23229.1| hypothetical protein AND_13286 [Anopheles darlingi]
          Length = 1530

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 145/699 (20%), Positives = 258/699 (36%), Gaps = 75/699 (10%)

Query: 18  GSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGG--------- 68
            + +          SP    +S    Y   S      LE + +RP  YIG          
Sbjct: 9   AAQQNGAALAAATGSPKIGGKSIEKIYQKKS-----QLEHILLRPDTYIGSIEMLKEQMW 63

Query: 69  --------------TDEKALHHLFSEVIDNAMDEVIAG-YANLIEVSLD-GNGFLTVVDN 112
                         T    L+ +F E++ NA D        + I+V ++     ++V +N
Sbjct: 64  IYDKESNKMVQKEITYVPGLYKIFDEILVNAADNKQRDAKMSTIKVEINQETNTISVWNN 123

Query: 113 GRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVT 172
           G+GIPV  H K        +I   L     +++   +++GG +G G  + N  S +  V 
Sbjct: 124 GQGIPVVMH-KEEKMYVPTMIFGHLLTSSNYNDEEAKVTGGRNGYGAKLCNIFSTKFTVE 182

Query: 173 VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG---TRITFRPD--PKIFGDKAGFDAARL 227
            A +      K + G  +S   + +   +  G   T+ITF PD                L
Sbjct: 183 TATKQYKKCFKQTWGDNMSKASEPKIKEDFNGEDYTKITFSPDLSKFKMEKLDDDIIGLL 242

Query: 228 LKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEI 287
            +     A  +  V    +  +   + +              K Y+   L++        
Sbjct: 243 SRRAFDVAASTRGVAVYLNGSRVPVKSF--------------KDYVDLFLKDAKDDVGGQ 288

Query: 288 FTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
                E   +     E A+A  E   +  S+ N+I T +GG H   +   + + + +   
Sbjct: 289 VKMCYE---SVNERWEVAVAISERGFQQVSFVNSIATTKGGRHVDYVTDMVVKQLTE-VL 344

Query: 348 LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
             +NK  ++I    +       ++  I  P F  QTK  +         +  L + F   
Sbjct: 345 KKKNKGGVAIKPFQIKNHMWVFVNCLIVNPTFDSQTKENMTLQSKSFGSKCNLSEKFI-- 402

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA-DCSQNIAHGTEL 466
              N +  + ++E V++ ++ + +    +    K +  K     + A D     +    L
Sbjct: 403 ---NAVAKSGIVESVLQWAKFKAQTDLAKTSGSKKSKIKGIPKLEDANDAGSRNSLNCTL 459

Query: 467 FIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523
            + EGDSA   A        R    V PLRGK+LNV  A  ++I  N +I +L++ LG +
Sbjct: 460 ILTEGDSAKTLAVSGLGVVGRDTYGVFPLRGKLLNVREATHKQILENAEINNLIKILGLQ 519

Query: 524 TRSQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
            + +Y   D    LRY KV+IMTD D DG+HI  LL+ F +    +L+    L     P+
Sbjct: 520 YKKKYLTTDDLKTLRYGKVMIMTDQDQDGSHIKGLLINFIHTNWPELLRLPFLEEFITPI 579

Query: 580 FRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
            + T+     +        ++   E          I  +KGLG   + + KE   +  + 
Sbjct: 580 VKATKKNGTELSFFSLPEFEEWKAETPNAHT--FNIKYYKGLGTSTSKEAKEYFQNMERH 637

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
            +L      + +       + +K      D+R  ++   
Sbjct: 638 RIL-FRYEDNGDDDA-IMMAFSK---KAVDQRKDWLTAH 671


>gi|57898980|dbj|BAD86854.1| DNA topoisomerase II [Coprinopsis cinerea]
          Length = 1572

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 158/718 (22%), Positives = 285/718 (39%), Gaps = 67/718 (9%)

Query: 3   DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRP 62
           D   D  S +      S+ + ++  + P       +S S+ Y     + L  LE +  RP
Sbjct: 63  DSDEDEDSGMDTDEPTSTARRQEEPDEP-VGQNKKKSTSEMY-----QKLTQLEHILKRP 116

Query: 63  GMYIGGTDE-----------------------KALHHLFSEVIDNAMDEVIAGY-ANLIE 98
             YIG  +                             +  E++ NA D  I     + ++
Sbjct: 117 DSYIGSIETITTPMWTYDSETKRMVHREVKYVPGFFKIVDEILVNAADNKINDPSMDTLK 176

Query: 99  VSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           V++D   G ++V +NGRGIP+E H K       E+I   L     +D+   +++GG +G 
Sbjct: 177 VTIDVEEGTISVYNNGRGIPIEIHSK-EKMYIPEMIFGHLLTSTNYDDDEKKLTGGRNGY 235

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG---TRITFRPDPK 214
           G  + N  S E  V  A +NT    K +    +S   K +  +N RG   TRITFRPD K
Sbjct: 236 GAKLANIYSLEFTVETADKNTSQKYKQTWTDNMSKCGKAKITKNTRGEEYTRITFRPDLK 295

Query: 215 IFGDK--AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            FG         + L +     A     VK   + ++    K      E +         
Sbjct: 296 RFGMNSIDEDTVSLLKRRVFDMAGTVKDVKVFLNDERLKI-KNFKQYVEMYVSSVQEAAA 354

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHES 332
            ++    +   +              R  + + ++  E   +  S+ N+I T +GGTH +
Sbjct: 355 EKSGGAAQPKQTVIHEQIS------DRWEIAYTLS-TEGTFQHVSFANSIATSKGGTHVN 407

Query: 333 GLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
            +   +++ +     +++  +  ++    +       +   I  P F  QTK  L    +
Sbjct: 408 YIADQISKAL--VTSISKKNKGATVKPAQIRNHMWLFVKSLIVNPTFDSQTKELLTLPSS 465

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPG 451
           +   +  + D F   + +     + +++ V+  ++ +  ++ +R    +++ +  L    
Sbjct: 466 KFGSKPTISDEFIKKVAK-----SGIVDNVLNWAKFKADQQMKRADGTKRSRLLGLAKLS 520

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIR 508
              +     A    L + EGDSA   A        R N  V PLRGK+LNV  A  ++I 
Sbjct: 521 DANNAGTRHAQDCTLILTEGDSAKALAIAGLGVVGRDNFGVFPLRGKLLNVREARHDQIM 580

Query: 509 NNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
            N++I ++ + +G +    Y     LRY +++IMTD D DG+HI  L++ F       L+
Sbjct: 581 KNEEIQNIKKIMGLQHNKDYTNTSSLRYGRLMIMTDQDHDGSHIKGLIINFLDHFYPSLL 640

Query: 568 EQK-HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           +    L     P+ R+ +G K          ++ LEE       K E   +KGLG     
Sbjct: 641 KIPDFLVEFVTPIVRVKKGNKVKDFFTIPEYEQWLEETPDA--RKWESKYYKGLGTSEDK 698

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE--RASFID 682
             +E      K  +            +    + +K    KADER +++++    +F+D
Sbjct: 699 DAREYFSKMEKHMIPFA--PTQEGDRELIDLAFSK---KKADERKEWLRQFKPGTFLD 751


>gi|121308839|dbj|BAF43524.1| DNA topoisomerase II [Coprinopsis cinerea]
          Length = 1569

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 158/718 (22%), Positives = 285/718 (39%), Gaps = 67/718 (9%)

Query: 3   DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRP 62
           D   D  S +      S+ + ++  + P       +S S+ Y     + L  LE +  RP
Sbjct: 63  DSDEDEDSGMDTDEPTSTARRQEEPDEP-VGQNKKKSTSEMY-----QKLTQLEHILKRP 116

Query: 63  GMYIGGTDE-----------------------KALHHLFSEVIDNAMDEVIAGY-ANLIE 98
             YIG  +                             +  E++ NA D  I     + ++
Sbjct: 117 DSYIGSIETITTPMWTYDSETKRMVHREVKYVPGFFKIVDEILVNAADNKINDPSMDTLK 176

Query: 99  VSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           V++D   G ++V +NGRGIP+E H K       E+I   L     +D+   +++GG +G 
Sbjct: 177 VTIDVEEGTISVYNNGRGIPIEIHSK-EKMYIPEMIFGHLLTSTNYDDDEKKLTGGRNGY 235

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG---TRITFRPDPK 214
           G  + N  S E  V  A +NT    K +    +S   K +  +N RG   TRITFRPD K
Sbjct: 236 GAKLANIYSLEFTVETADKNTSQKYKQTWTDNMSKCGKAKITKNTRGEEYTRITFRPDLK 295

Query: 215 IFGDK--AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            FG         + L +     A     VK   + ++    K      E +         
Sbjct: 296 RFGMNSIDEDTVSLLKRRVFDMAGTVKDVKVFLNDERLKI-KNFKQYVEMYVSSVQEAAA 354

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHES 332
            ++    +   +              R  + + ++  E   +  S+ N+I T +GGTH +
Sbjct: 355 EKSGGAAQPKQTVIHEQIS------DRWEIAYTLS-TEGTFQHVSFANSIATSKGGTHVN 407

Query: 333 GLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
            +   +++ +     +++  +  ++    +       +   I  P F  QTK  L    +
Sbjct: 408 YIADQISKAL--VTSISKKNKGATVKPAQIRNHMWLFVKSLIVNPTFDSQTKELLTLPSS 465

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPG 451
           +   +  + D F   + +     + +++ V+  ++ +  ++ +R    +++ +  L    
Sbjct: 466 KFGSKPTISDEFIKKVAK-----SGIVDNVLNWAKFKADQQMKRADGTKRSRLLGLAKLS 520

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIR 508
              +     A    L + EGDSA   A        R N  V PLRGK+LNV  A  ++I 
Sbjct: 521 DANNAGTRHAQDCTLILTEGDSAKALAIAGLGVVGRDNFGVFPLRGKLLNVREARHDQIM 580

Query: 509 NNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
            N++I ++ + +G +    Y     LRY +++IMTD D DG+HI  L++ F       L+
Sbjct: 581 KNEEIQNIKKIMGLQHNKDYTNTSSLRYGRLMIMTDQDHDGSHIKGLIINFLDHFYPSLL 640

Query: 568 EQK-HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           +    L     P+ R+ +G K          ++ LEE       K E   +KGLG     
Sbjct: 641 KIPDFLVEFVTPIVRVKKGNKVKDFFTIPEYEQWLEEAPDA--RKWESKYYKGLGTSEDK 698

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE--RASFID 682
             +E      K  +            +    + +K    KADER +++++    +F+D
Sbjct: 699 DAREYFSKMEKHMIPFA--PTQEGDRELIDLAFSK---KKADERKEWLRQFKPGTFLD 751


>gi|288939795|ref|YP_003442035.1| XRE family transcriptional regulator [Allochromatium vinosum DSM
           180]
 gi|288895167|gb|ADC61003.1| transcriptional regulator, XRE family [Allochromatium vinosum DSM
           180]
          Length = 1371

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 201/506 (39%), Positives = 300/506 (59%), Gaps = 19/506 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            YD+++I++L GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGY + + V+L
Sbjct: 2   TYDSTNIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCSTVSVTL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G ++VVD+GRGIPV+ H +  N+S  E+ILT LHAGGKFD+++Y++SGGLHGVG+SV
Sbjct: 62  HADGSVSVVDDGRGIPVDIHAE-ENRSAAEVILTVLHAGGKFDDNSYKVSGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+ L++ + R   +  Q++  G P+ PL          GT I F P  +IF +   
Sbjct: 121 VNALSERLYLRIRRGGHLHEQEYRLGEPVYPLRVIGDTEE-TGTEIRFYPSGEIFSN-LD 178

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F    L K  +  ++L+  V+   S +            + F + GG++ +++   +N+ 
Sbjct: 179 FHYDILAKRLRELSFLNSGVRIALSDE-------ASGRHDVFEYEGGIRAFVENLNQNKE 231

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I   +    TE++      VE AI W       I  Y NTI   +GGTH +GLR ALTR
Sbjct: 232 PIHPTVVYFSTERQDI---GVELAIQWNNSYQETIFCYTNTIPQRDGGTHLAGLRAALTR 288

Query: 341 GIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +  Y E     +      I DD       +LSV + +P+F+ QTK KLVS + +  VE+
Sbjct: 289 TLNGYIEREGLDKNQKIRPIGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKAVVES 348

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCS 457
            + +    +L + P EA  +   ++E +  R   RK RE+ R+   +    LPGKLADC 
Sbjct: 349 LVVEHLGTFLEEQPNEAKVIAGKMLEAARAREAARKAREMTRRKGVLDIAGLPGKLADCQ 408

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           +     +EL++VEGDSAGGSAKQ R+R+ QA+LPL+GKILNV  A  +K+  + ++  L+
Sbjct: 409 EKDPAKSELYLVEGDSAGGSAKQGRDRAFQAILPLKGKILNVEKARFDKMLASAEVGTLI 468

Query: 518 QALGCRT-RSQYREEDLRYEKVIIMT 542
            ALGC   R +Y  ++LRY +VIIM+
Sbjct: 469 TALGCGIGREEYNPDNLRYHRVIIMS 494



 Score =  143 bits (360), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 7/104 (6%)

Query: 582  ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
            + +G K     D     + L       +    I R+KGLGEM   QL ET M+   R LL
Sbjct: 1274 VRRGEKIKEIGDLGEAIRWL---LAEAQRGYSIQRYKGLGEMNPEQLWETTMNPEMRRLL 1330

Query: 642  RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +V I   +            LMG + + R +FI+  A  + ++ 
Sbjct: 1331 KVTIEDAV----AADQIFTTLMGDQVEPRREFIERNALNVGNLD 1370



 Score =  107 bits (266), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 43/60 (71%)

Query: 542  TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
            TDADVDGAHI +LLLTFFY++M +L+E+ H+++  PPL+++ +G +  Y  DE      +
Sbjct: 1064 TDADVDGAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKLKKGKQEDYLLDETALNGAM 1123


>gi|1174741|sp|P41515|TOP2A_CRIGR RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
           topoisomerase II, alpha isozyme
 gi|191218|gb|AAA37023.1| DNA topoisomerase II [Cricetulus griseus]
          Length = 1526

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 138/690 (20%), Positives = 266/690 (38%), Gaps = 69/690 (10%)

Query: 21  EKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD---------- 70
            +  +  +  +  A    S    Y          LE + +RP  YIG  +          
Sbjct: 10  NENMQMNKKKNEDAKKRLSIERIYQKK-----TQLEHILLRPDTYIGSVELVTQQMWVYD 64

Query: 71  ------------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGI 116
                          L+ +F E++ NA D        + I V++D  N  +++ +NG+GI
Sbjct: 65  EDVGINYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGI 124

Query: 117 PVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTV--A 174
           PV  H K        +I   L     +D+   +++GG +G G  + N  S    V     
Sbjct: 125 PVVEH-KVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTRFTVETASK 183

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLLKMTQ 232
               +F Q +   +  +   + +    +  T ITF+PD   F  +       A +++   
Sbjct: 184 EYKKMFKQTWMDNMGRAGDMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAY 243

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             A  +  VK   + +K   +              G ++Y+   L+++   +        
Sbjct: 244 DIAGSTKDVKVFLNGNKLPVK--------------GFRSYVDMYLKDKLDETGNALKVVH 289

Query: 293 EKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK 352
           E+        E  +   E+  +  S+ N+I T +GG H   +   +   +       +NK
Sbjct: 290 EQ---VNPRWEVCLTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVSKLVD-VVKKKNK 345

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +++ +  +       ++  I  P F  QTK  +            L + F    +   
Sbjct: 346 GGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQAKSFGSTCQLSEKFIKAAIG-C 404

Query: 413 IEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
                +L WV  +++  ++  K+    +   I+ +       D     +    L + EGD
Sbjct: 405 GIVESILNWVKFKAQ--IQLNKKCSAVKHNRIKGIPKLDDANDAGSRNSTECTLILTEGD 462

Query: 473 SAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           SA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +G + +  Y 
Sbjct: 463 SAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKNYE 522

Query: 530 EED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG 585
           +ED    LRY K++IMTD D DG+HI  LL+ F +     L+  + L     P+ ++++ 
Sbjct: 523 DEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKN 582

Query: 586 TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645
            + +  +     ++       H   K ++  +KGLG   + + KE   D  +   ++ + 
Sbjct: 583 KQELAFYSLPEFEEWKSSTPNH--KKWKVKYYKGLGTSTSKEAKEYFADMKRHR-IQFKY 639

Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQ 675
           +           + +K    + D+R +++ 
Sbjct: 640 S-GPEDDAAISLAFSK---KQVDDRKEWLT 665


>gi|170047758|ref|XP_001851377.1| DNA topoisomerase 2 [Culex quinquefasciatus]
 gi|167870064|gb|EDS33447.1| DNA topoisomerase 2 [Culex quinquefasciatus]
          Length = 1358

 Score =  393 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 153/722 (21%), Positives = 277/722 (38%), Gaps = 82/722 (11%)

Query: 1   MTDDSIDLFSTLP-----PQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGL 55
           M D S+    + P     PQ+  ++ +         SP    +S    Y   S      L
Sbjct: 1   MFDKSLIFVFSPPLHLHHPQAAFAANQNGSGAGATASPKVGGKSIEKIYQKKS-----QL 55

Query: 56  EPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDNAMDEVIAG 92
           E + +RP  YIG  +                          L+ +F E++ NA D     
Sbjct: 56  EHILLRPDTYIGSVEQLKETQWIYDTEANKMIQKEITFVPGLYKIFDEILVNAADNKQRD 115

Query: 93  -YANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
                I++ ++     +++ +NG+GIPV  H K        +I   L     +++   ++
Sbjct: 116 AKMTAIKIDINQETNTISIWNNGQGIPVVMH-KEEKMYVPTMIFGHLLTSSNYNDEEQKV 174

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI---PLSPLEKKEKVRNKRGTRI 207
           +GG +G G  + N  S +  V  A +    + K + G      S  + KE    +  T+I
Sbjct: 175 TGGRNGYGAKLCNIFSTKFTVETASKQYKKAFKQTWGDNMSKASEPKIKEGASGEDYTKI 234

Query: 208 TFRPDPKIFGDK--AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           TF PD   F  +         + +     A  +  V    +  K   +           F
Sbjct: 235 TFSPDLTKFKMEKLDDDIVGLMSRRAFDVAASTRGVAVYLNGKKLPIKN----------F 284

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTD 325
              +  Y++ + E+ S      +    E+        E A+A  E+  +  S+ N+I T 
Sbjct: 285 KDYIDLYVKEQQEDVSAPIKVCYENANER-------WEVAVAISEKGFQQVSFVNSIATT 337

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           +GG H   +   + + + +     +NK  I+I    +       ++  I  P F  QTK 
Sbjct: 338 KGGRHVDYVTDMIVKQLIE-VLKKKNKGGINIKPFQVKNHMWVFINCLIVNPTFDSQTKE 396

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAI 444
            +         + AL + F   + +     + ++E V++ ++ + +    +   ++K+ I
Sbjct: 397 NMTLQAKSFGSKCALSEKFITAVSK-----SGIVESVLQWAKFKAQTELNKASGSKKSKI 451

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVAS 501
           + +       D     +    L + EGDSA   A        R    V PLRGK+LNV  
Sbjct: 452 KGVPKLEDANDAGTKNSLNCTLILTEGDSAKTLAVSGLGVVGRDTYGVFPLRGKLLNVRE 511

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREED----LRYEKVIIMTDADVDGAHIASLLLT 557
           A  ++I  N +I +L++ LG + + +Y   D    LRY KV+IMTD D DG+HI  LL+ 
Sbjct: 512 ATHKQILENAEINNLIKILGLQYKKKYLTIDDLKTLRYGKVMIMTDQDQDGSHIKGLLIN 571

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISR 616
           F +    +L+    L     P+ + T+   + +        ++   E          I  
Sbjct: 572 FIHTNWPELLRLPFLEEFITPIVKATKKNGEELSFFSLPEFEEWKTETANSHT--YNIKY 629

Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQ 675
           +KGLG   + + KE   +  +  +L               D+I      K  D+R +++ 
Sbjct: 630 YKGLGTSTSKEAKEYFQNMERHRILF------TYDTSTDDDAITMAFAKKCVDQRKEWLT 683

Query: 676 ER 677
             
Sbjct: 684 AH 685


>gi|224537369|ref|ZP_03677908.1| hypothetical protein BACCELL_02247 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520994|gb|EEF90099.1| hypothetical protein BACCELL_02247 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 623

 Score =  393 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 192/665 (28%), Positives = 304/665 (45%), Gaps = 76/665 (11%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDE-----KALHHLFSEVIDNAMDEVIAGYANLI 97
            Y   +IR L+ +E +R+R GMYIG   +       ++ L  EV+DN++DE   G    I
Sbjct: 14  EYTEDNIRHLDDMEHIRVRSGMYIGRLGDGTQNDDGIYVLLKEVMDNSIDEFKMGAGRRI 73

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           E++++ N  ++V D GRGIP     +          ++ L+ GGK+D+  ++ S GL+GV
Sbjct: 74  EINIEDNLRVSVRDYGRGIPQGKLIE---------AVSKLNTGGKYDSKAFKKSVGLNGV 124

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           GI  VNALS    V   R+  +    F +G   S     E    + GT I F PD     
Sbjct: 125 GIKAVNALSSRFEVRSYREGKVRIAIFEKGNLQSD--VTESCNEESGTYIFFEPD-STLF 181

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F A  +  + ++  YL+  +   ++  + I                GL+  L   +
Sbjct: 182 LNYSFQANFVETLLRNYTYLNTGLSIIYNGQRII-------------SRHGLEDLLNDNM 228

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
             + L +     G+          +E A     +   E  S+ N   T +GGTH+S L+ 
Sbjct: 229 TAQGLYNIIHLKGE---------DIEIAFTHTNQYGEEYYSFVNGQHTTQGGTHQSALKE 279

Query: 337 ALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR-- 394
            + R IK++          +    D+    V  +++ + EP+F GQTKTKL S       
Sbjct: 280 HIARTIKEFYN-------KNQEYADIRNGIVAAIAINVEEPQFEGQTKTKLGSPSMSPGG 332

Query: 395 -----TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
                 V + ++   D+YL +NP+ A  +L+ + +  +ER       ++ R+ A +    
Sbjct: 333 VSVNKYVGDFIKTEVDNYLHKNPLVAEVMLQKIQDSEKERKAIAGVTKLARERAKKANLH 392

Query: 450 PGKLADCSQN--------IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             KL DC  +            + +FI EGDSA GS  ++R+ + QAV  LRGK LN   
Sbjct: 393 NRKLRDCRYHLNDGKGKEQESESCIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSFG 452

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
              + +  N++   L  AL          E LRY KVI  TDADVDG HI  LL+TFF Q
Sbjct: 453 LTKKVVYENEEFNLLQAALNIE----DGIEGLRYNKVIAATDADVDGMHIRLLLITFFLQ 508

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
              DLI++ H++++  PLFR+    K++Y + EE +QK + E   +     EI+RFKGLG
Sbjct: 509 FFPDLIKKGHVYILQTPLFRVRNKKKTIYCYTEEERQKAIAELSPN----PEITRFKGLG 564

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           E+   + +          L +V + K        ++ +   MG    ER  FI       
Sbjct: 565 EISPDEFRHFIG--KDMRLEQVTLRK----TDLVKELLEFYMGKNTMERQNFIINNLVIE 618

Query: 682 DDVGT 686
           +D+ +
Sbjct: 619 EDLAS 623


>gi|2909393|emb|CAA76313.1| DNA topoisomerase II alpha [Cricetulus longicaudatus]
          Length = 1526

 Score =  393 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 137/690 (19%), Positives = 265/690 (38%), Gaps = 69/690 (10%)

Query: 21  EKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD---------- 70
            +  +  +  +  A    S    Y          LE + +RP  YIG  +          
Sbjct: 10  NENMQMNKKKNEDAKKRLSIERIYQKK-----TQLEHILLRPDTYIGSVELVTQQMWVYD 64

Query: 71  ------------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGI 116
                          L+ +F E++ NA D        + I V++D  N  +++ +NG+GI
Sbjct: 65  EDVGINYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGI 124

Query: 117 PVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTV--A 174
           PV  H K        +I   L     +D+   +++GG +G G  + N  S    V     
Sbjct: 125 PVVEH-KVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTRFTVETASK 183

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLLKMTQ 232
               +F Q +   +  +   + +    +  T ITF+PD   F  +       A +++   
Sbjct: 184 EYKKMFKQTWMDNMGRAGDMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAY 243

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             A  +  VK   + +K   +              G ++Y+   L+++   +        
Sbjct: 244 DIAGSTKDVKVFLNGNKLPVK--------------GFRSYVDMYLKDKLDETGNALKVVH 289

Query: 293 EKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK 352
           E+        E  +   E+  +  S+ N+I T +GG H   +   +   +       +NK
Sbjct: 290 EQ---VNPRWEVCLTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVSKLVD-VVKKKNK 345

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +++ +  +       ++  I  P F  QTK  +            L + F    +   
Sbjct: 346 GGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQAKSFGSTCQLSEKFIKAAIG-C 404

Query: 413 IEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
                +L WV  +++  ++  K+    +   I+ +       D     +    L + EGD
Sbjct: 405 GIVESILNWVKFKAQ--IQLNKKCSAVKHNRIKGIPKLDDANDAGSRNSTECTLILTEGD 462

Query: 473 SAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           SA   A        R    V PL GKILNV  A  ++I  N +I ++++ +G + +  Y 
Sbjct: 463 SAKTLAVSGLGVVGRDKYGVFPLGGKILNVREASHKQIMENAEINNIIKIVGLQYKKNYE 522

Query: 530 EED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG 585
           +ED    LRY K++IMTD D DG+HI  LL+ F +     L+  + L     P+ ++++ 
Sbjct: 523 DEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKN 582

Query: 586 TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645
            + +  +     ++       H   K ++  +KGLG   + + KE   D  +   ++ + 
Sbjct: 583 KQELAFYSLPEFEEWKSSTPNH--KKWKVKYYKGLGTSTSKEAKEYFADMKRHR-IQFKY 639

Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQ 675
           +           + +K    + D+R +++ 
Sbjct: 640 S-GPEDDAAISLAFSK---KQVDDRKEWLT 665


>gi|168033077|ref|XP_001769043.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679677|gb|EDQ66121.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1172

 Score =  393 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 145/688 (21%), Positives = 261/688 (37%), Gaps = 71/688 (10%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-------------------- 70
           D     ++S  + Y          LE + +RP  Y+G  +                    
Sbjct: 18  DREPQNDKSIEETYQKK-----TQLEHILLRPDTYVGSIEKHTQSLWVYEDEKMVNRSVT 72

Query: 71  -EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNK 127
               L+ +F E++ NA D        + ++V +D  N F++V +NG G+PVE H K    
Sbjct: 73  FVPGLYKIFDEILVNAADNKQRDPSMDTVKVEIDVENNFISVFNNGDGVPVEIH-KEEGV 131

Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK--FS 185
              E+I   L     +++S  + +GG +G G  + N  S E  +  A    +   K  F+
Sbjct: 132 YVPEMIFGHLLTSSNYNDSEKKTTGGRNGYGAKLANIFSTEFTIETADGKRLRRYKQVFT 191

Query: 186 RGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKA--GFDAARLLKMTQSKAYLSGRVK 242
             + L    K    + N+  T+++F+PD   F          A + K     A   G   
Sbjct: 192 NNMSLKSEPKITTCKANENWTKVSFKPDLSKFNMTHLESDVVALMSKRVMDVAGCLG--- 248

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
                 K    +          F   +  YL      R      I+   +++        
Sbjct: 249 ------KGCKVELNGKRLPIKSFQDYVGLYLSVANAGREEPLPRIYERVSDR-------W 295

Query: 303 EWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDL 362
           E  ++  +      S+CN+I T  GGTH + +   +   +   A + +  +   +    +
Sbjct: 296 EVCVSLSDGQFNQVSFCNSIATIRGGTHVAYVTDQIVTHV--LALVNKKNKTAGVKPFQI 353

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
                  ++  I  P F  QTK  L +  +    +  L   F   + +       ++E V
Sbjct: 354 KNHMWVFVNALIDNPTFDSQTKETLTTRASSFGSKCELSPEFLKKVAKC-----GVVENV 408

Query: 423 IERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
           +  ++ +  +  ++    ++  I  +       D     +    L + EGDSA   A   
Sbjct: 409 LTWADFKQSKELKKNDGAKRQRITGIPKLDDANDAGGKSSEKCTLILTEGDSAKALAMSG 468

Query: 482 RN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEK 537
            +   R    V PLRGK+LNV  A  ++I  N +I ++ + LG +    Y     LRY  
Sbjct: 469 ISVVGRDKYGVFPLRGKLLNVREASHKQIMENAEITNIKRILGLQHGKDYDSTKSLRYGH 528

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK-HLFLISPPLFRITQGTKSVYAHDEEH 596
           ++IMTD D DG+HI  LL+ F +     L++    L     P+ + T   K++  +    
Sbjct: 529 LMIMTDQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATNKQKTLSFYTMPE 588

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            +   E      KG   I  +KGLG   + + KE   +  K    +    +        +
Sbjct: 589 YEAWKESLNGETKG-WTIKYYKGLGTSTSKEGKEYFRELVKH--KKDFKWESEMDGDAIE 645

Query: 657 DSINKLMGTKADERFKFIQ--ERASFID 682
            + +K    K + R  +++  E  +F+D
Sbjct: 646 MAFSK---KKIEARKTWLRHYEPGTFLD 670


>gi|240280878|gb|EER44382.1| DNA topoisomerase 2 [Ajellomyces capsulatus H143]
          Length = 1737

 Score =  393 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 161/725 (22%), Positives = 288/725 (39%), Gaps = 74/725 (10%)

Query: 6   IDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYD--------ASSIRILEGLEP 57
             L S  PP +   ++K   S + P+ P    ++ S   D        +   + L  LE 
Sbjct: 87  ASLLSATPPNAATKAKKSAGSKKPPNKPLENVENESFGMDGATVPKENSEKYQKLTQLEH 146

Query: 58  VRMRPGMYIGGTD-----------------------EKALHHLFSEVIDNAMDEVIAG-Y 93
           +  RP  YIG  +                          L+ +F E++ NA D       
Sbjct: 147 IIKRPDTYIGSIERSTNQMWVYNMQSGSMEFREVSYVPGLYKIFDEILVNAADNKHNDKN 206

Query: 94  ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
            + I V+LD   G ++V +NGRGIP+E H K       E++   L +   +D++  +++G
Sbjct: 207 MDEIRVTLDRESGEISVWNNGRGIPIEIHAK-EKVYIPELVFGHLLSSSNYDDNQQKVTG 265

Query: 153 GLHGVGISVVNALSDELHVTVARQ--NTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           G +G G  + N  S E  +  A       + Q ++  +      K    +    T++TF 
Sbjct: 266 GRNGYGAKLCNIFSTEFTLETADSKLKKKYKQTWTDNMSKMGKPKITDCKGDDYTKVTFI 325

Query: 211 PD-PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           PD  K   D    D   L+K       L+G  K     +          +  + Y     
Sbjct: 326 PDFKKFGMDGIDDDFEALVKRR--VYDLAGTCKVTVKLNGSRIPIRNFKQYMQMYTNAIK 383

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGT 329
           K   +   +++S I ++                E   A  + + +  S+ N+I T  GG+
Sbjct: 384 KERGEEASKDKSEIITD----------NPDPRWEIGFAVSDGSFQQVSFVNSIATTSGGS 433

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           H + +   +   + + A   +NK   ++    +       ++  I  P F  QTK +L +
Sbjct: 434 HVNSVADQICNKLVE-AVKKKNKTGATLKPAQIRNHIFVFVNAQIVNPAFTSQTKEQLTT 492

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
             +Q   +  L D F   +++  +        ++  +E++  +  ++    + +      
Sbjct: 493 KPSQFGSKCVLSDEFLKKILKTQVMEN-----ILHFAEKKADQILKKTDGNRRSRMNNPK 547

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEK 506
                       H   L + EGDSA G A   R         V PLRGK+LNV  A  ++
Sbjct: 548 LTDANKAGTKEGHHCTLILTEGDSAKGLAMAGRAIVGPDLFGVFPLRGKLLNVRDASVDQ 607

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           I  N +I ++   LG + + +Y +   LRY  ++IMTD D DG+HI  LL+ FF      
Sbjct: 608 ISKNAEIQNIKNFLGLQHKKEYTDTKGLRYGHLMIMTDQDHDGSHIKGLLINFFQVAFPS 667

Query: 566 LIEQK-HLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
           L++    L     P+ ++ +G     T S      +  +   +E   H K   E   +KG
Sbjct: 668 LLKIPQFLIEFITPIVKVWKGDPKNPTISKVFFTMQEYKTW-QEIHGHDKR-WEKKYYKG 725

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE--R 677
           LG       +    D +K  L +  + +D  + +    + +K    KADER +++++   
Sbjct: 726 LGTSSTDDAEIYFRDLDKH-LKQFHVMQDHEA-ELIDLAFSK---KKADERKEWLRQFKP 780

Query: 678 ASFID 682
            +F+D
Sbjct: 781 GTFLD 785


>gi|1174742|sp|P41516|TOP2A_RAT RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
           topoisomerase II, alpha isozyme
 gi|587515|emb|CAA86496.1| DNA topoisomerase II [Rattus norvegicus]
          Length = 1526

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 135/684 (19%), Positives = 263/684 (38%), Gaps = 68/684 (9%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD---------------- 70
            +  +       S    Y          LE + +RP  YIG  +                
Sbjct: 16  NKKKNEDGKKRLSVERIYQKK-----TQLEHILLRPDTYIGSVELVTQQMWVYDEDVGIN 70

Query: 71  ------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
                    L+ +F E++ NA D        + I V++  N  +++ +NG+GIPV  H K
Sbjct: 71  YREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTMMRNNLISIWNNGKGIPVVEH-K 129

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTV--ARQNTIFS 181
                   +I   L     +D+   +++GG +G G  + N  S +  V         +F 
Sbjct: 130 VEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFK 189

Query: 182 QKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLLKMTQSKAYLSG 239
           Q +   +  +   + +    +  T ITF+PD   F  +       A +++     A  + 
Sbjct: 190 QTWMDNMGRAGDMELKPFSGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTK 249

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            VK   + ++   +              G ++Y+   L+++   +        E+     
Sbjct: 250 DVKVFLNGNRLPVK--------------GFRSYVDMYLKDKVDETGNALKVVHEQ---VN 292

Query: 300 GTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359
              E  +   E+  +  S+ N+I T +GG H   +   +   +       +NK  +++ +
Sbjct: 293 PRWEVCLTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVSKLVD-VVKKKNKGGVAVKA 351

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           D +        +  I  P F  QTK  +            L + F    +        +L
Sbjct: 352 DQVKNHMWIFGNAVIENPTFDSQTKENMTLQAKSFGSTCQLSEKFIKAAIG-CGIVESIL 410

Query: 420 EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
            WV  +++  ++  K+    +   I+ +       D     +    L + EGDSA   A 
Sbjct: 411 NWVKFKAQ--IQLNKKCSAVKHNRIKGIPKLDDANDAGSRNSAECTLILTEGDSAKTLAV 468

Query: 480 QA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED---- 532
                  R    V PLRGKILNV  A  ++I  N +I ++++ +G + +  Y +ED    
Sbjct: 469 SGLGVVGRDKYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKT 528

Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAH 592
           LRY K++IMTD D DG+HI  LL+ F +     L+  + L     P+ ++++  + +  +
Sbjct: 529 LRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQEIAFY 588

Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652
                ++       H   K ++  +KGLG   + + KE   +  +   ++ + +      
Sbjct: 589 SLPEFEEWKSTNPNH--KKWKVKYYKGLGTSTSKEAKEYFANMKRHR-IQFKYS-GPEDD 644

Query: 653 KDTQDSINKLMGTKADERFKFIQE 676
                + +K    + D+R +++  
Sbjct: 645 AAISLAFSK---KQVDDRKEWLTN 665


>gi|38259192|ref|NP_071519.2| DNA topoisomerase 2-alpha [Rattus norvegicus]
 gi|57964|emb|CAA79611.1| DNA topoisomerase II [Rattus norvegicus]
          Length = 1526

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 135/684 (19%), Positives = 263/684 (38%), Gaps = 68/684 (9%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD---------------- 70
            +  +       S    Y          LE + +RP  YIG  +                
Sbjct: 16  NKKKNEDGKKRLSVERIYQKK-----TQLEHILLRPDTYIGSVELVTQQMWVYDEDVGIN 70

Query: 71  ------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
                    L+ +F E++ NA D        + I V++  N  +++ +NG+GIPV  H K
Sbjct: 71  YREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTMMRNNLISIWNNGKGIPVVEH-K 129

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTV--ARQNTIFS 181
                   +I   L     +D+   +++GG +G G  + N  S +  V         +F 
Sbjct: 130 VEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFK 189

Query: 182 QKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLLKMTQSKAYLSG 239
           Q +   +  +   + +    +  T ITF+PD   F  +       A +++     A  + 
Sbjct: 190 QTWMDNMGRAGDMELKPFSGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTK 249

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            VK   + ++   +              G ++Y+   L+++   +        E+     
Sbjct: 250 DVKVFLNGNRLPVK--------------GFRSYVDMYLKDKVDETGNALKVVHEQ---VN 292

Query: 300 GTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359
              E  +   E+  +  S+ N+I T +GG H   +   +   +       +NK  +++ +
Sbjct: 293 PRWEVCLTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVSKLVD-VVKKKNKGGVAVKA 351

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           D +        +  I  P F  QTK  +            L + F    +        +L
Sbjct: 352 DQVKNHMWIFGNAVIENPTFDSQTKENMTLQAKSFGSTCQLSEKFIKAAIG-CGIVESIL 410

Query: 420 EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
            WV  +++  ++  K+    +   I+ +       D     +    L + EGDSA   A 
Sbjct: 411 NWVKFKAQ--IQLNKKCSAVKHNRIKGIPKLDDANDAGSRNSAECTLILTEGDSAKTLAV 468

Query: 480 QA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED---- 532
                  R    V PLRGKILNV  A  ++I  N +I ++++ +G + +  Y +ED    
Sbjct: 469 SGLGVVGRDKYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKT 528

Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAH 592
           LRY K++IMTD D DG+HI  LL+ F +     L+  + L     P+ ++++  + +  +
Sbjct: 529 LRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQEIAFY 588

Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652
                ++       H   K ++  +KGLG   + + KE   +  +   ++ + +      
Sbjct: 589 SLPEFEEWKSTNPNH--KKWKVKYYKGLGTSTSKEAKEYFANMKRHR-IQFKYS-GPEDD 644

Query: 653 KDTQDSINKLMGTKADERFKFIQE 676
                + +K    + D+R +++  
Sbjct: 645 AAISLAFSK---KQVDDRKEWLTN 665


>gi|301779127|ref|XP_002924981.1| PREDICTED: DNA topoisomerase 2-alpha-like [Ailuropoda melanoleuca]
          Length = 1533

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 141/694 (20%), Positives = 271/694 (39%), Gaps = 69/694 (9%)

Query: 17  QGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD------ 70
           Q  +E ++ S    +  A    S    Y          LE + +RP  YIG  +      
Sbjct: 7   QPVNENMQISKTKKNEDAKKGLSIERIYQKK-----TQLEHILLRPDTYIGSVELVTQQM 61

Query: 71  ----------------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDN 112
                              L+ +F E++ NA D        + I V++D  N  +++ +N
Sbjct: 62  WVYDEDIGINYREVTFVPGLYKIFDEILVNAADNKQRDPNMSCIRVTIDPENNLISIWNN 121

Query: 113 GRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVT 172
           G+GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V 
Sbjct: 122 GKGIPVVEH-KVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 180

Query: 173 V--ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLL 228
                   +F Q +   +  +   + +    +  T ITF+PD   F  +       A ++
Sbjct: 181 TASREYKKMFKQTWMDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMV 240

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           +     A  +  VK   + +K   +              G ++Y+   L+++   +    
Sbjct: 241 RRAYDIAGSTKDVKVFLNGNKLPVK--------------GFRSYVDMYLKDKVDETGNPL 286

Query: 289 TGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
               E+        E  +   E+  +  S+ N+I T +GG H   +   +   +      
Sbjct: 287 KIIHEQ---VNPRWEVCLTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLVD-VVK 342

Query: 349 TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
            +NK  +++ +  +       ++  I  P F  QTK  +            L + F    
Sbjct: 343 KKNKGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQVKSFGSTCQLSEKFIKAA 402

Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFI 468
           +        +L WV  +++  ++  K+    +   I+ +       D     ++   L +
Sbjct: 403 IG-CGIVESILNWVKFKAQ--VQLNKKCSAVKHNRIKGIPKLDDANDAGGRNSNECTLIL 459

Query: 469 VEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
            EGDSA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +G + +
Sbjct: 460 TEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYK 519

Query: 526 SQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581
             Y +ED    LRY K++IMTD D DG+HI  LL+ F +     L+  + L     P+ +
Sbjct: 520 KNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVK 579

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           +++  + +  +     ++       H   K ++  +KGLG   + + KE   D  +   +
Sbjct: 580 VSKNKQEMAFYSLPEFEEWKSSTPNH--KKWKVKYYKGLGTSTSKEAKEYFADMKRHR-I 636

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675
           + + +           + +K    + D+R +++ 
Sbjct: 637 QFKYS-GPEDDAAISLAFSK---KQIDDRKEWLT 666


>gi|6094496|sp|O24308|TOP2_PEA RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II; AltName: Full=PsTopII
 gi|2330651|emb|CAA74891.1| topoisomerase II [Pisum sativum]
          Length = 1462

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 135/687 (19%), Positives = 270/687 (39%), Gaps = 69/687 (10%)

Query: 24  KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD------------- 70
           K+  +  ++    +++  + Y          LE + +RP  Y+G  +             
Sbjct: 3   KRPLQTSNAANIPSKTIEEMYQKK-----TQLEHILLRPDTYVGSIEKHTQNLWVYENDE 57

Query: 71  --------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVEN 120
                      L+ +F E++ NA D        + ++V++D     ++V +NG G+PVE 
Sbjct: 58  MVHRAVSYVPGLYKIFDEILVNAADNKQRDPSMDSLKVTIDPEANTVSVYNNGDGVPVEI 117

Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
           H +       E+I   L     +D++  + +GG +G G  + N  S E  +  A    + 
Sbjct: 118 HQE-EKVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGRRLK 176

Query: 181 SQK--FSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKA--GFDAARLLKMTQSKA 235
             K  FS  +         K + ++  T++TF+PD + F          A + K     A
Sbjct: 177 KYKQVFSNNMGTKCEPVITKCKASENWTKVTFKPDLEKFKMAYLEEDVVALMKKRVLDMA 236

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
              G         K +  +          F      +L+   +++ +    I     ++ 
Sbjct: 237 GCFG---------KTVKVELNGTLIRFKSFRDYADLFLKCAEKSKPMPLPRIHAKVGDR- 286

Query: 296 GTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI 355
                  E  I+  +   +  S+ N+I T +GGTH   +   +T  I    ++ + K+  
Sbjct: 287 ------WEICISLSDGQFQQVSFVNSIATIKGGTHVDYITNQITTYIMN--KVNKKKKDA 338

Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415
           ++ +  +       ++  I  P F  QTK  L +  A    +  + +     + +     
Sbjct: 339 NVKAHTVKNHLWVFVNSLIDNPAFDSQTKETLTTRQASFGSKCDVPESMLKDVEK----- 393

Query: 416 TKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
           + +++ ++  ++ +  +  ++    KT   +        +     +    L + EGDSA 
Sbjct: 394 SGIVDTLLSWADFKQSKDLKKTDGTKTQRLRGCKAEDANEAGGRNSEKCTLILTEGDSAK 453

Query: 476 GSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
             A    +   R +  V PLRGK+LNV  A S++I +N++I ++ + LG +   +Y    
Sbjct: 454 ALAMAGLSVVGRDHYGVFPLRGKLLNVREASSKQIMDNEEIQNIKKILGLQQNKEYTNVK 513

Query: 533 -LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK-HLFLISPPLFRITQGTKSV- 589
            LRY  ++IM D D DG+HI  LL+ F +     L++    L   + P+ R +   K++ 
Sbjct: 514 SLRYGHLMIMADQDHDGSHIKGLLINFIHSFWPSLLKVPSFLVEFTTPVIRASHPNKTIT 573

Query: 590 YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDL 649
             +     +   E          +I  +KGLG     + +E   D  +    +  I  D 
Sbjct: 574 SFYSMPEYEAWKERLGNSATS-WKIKYYKGLGTSTPQEGREYFSDLGRHR--KDFIWDDE 630

Query: 650 NSLKDTQDSINKLMGTKADERFKFIQE 676
                 + + +K    KA+ R  +++ 
Sbjct: 631 LDGNAIELAFSK---KKAEGRKIWMRN 654


>gi|4218221|emb|CAA09762.1| DNA topoisomerase (ATP-hydrolysing) [Homo sapiens]
          Length = 1531

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 139/695 (20%), Positives = 269/695 (38%), Gaps = 69/695 (9%)

Query: 17  QGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD------ 70
           Q  +E ++ +    +  A    S    Y          LE + +RP  YIG  +      
Sbjct: 7   QPVNENMQVNKIKKNEDAKKRLSVERIYQKK-----TQLEHILLRPDTYIGSVELVTQQM 61

Query: 71  ----------------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDN 112
                              L+ +F E++ NA D        + I V++D  N  +++ +N
Sbjct: 62  WVYDEDVGINYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNN 121

Query: 113 GRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVT 172
           G+GIPV  H K        +I   L     + +   +++GG +G G  + N  S +  V 
Sbjct: 122 GKGIPVVEH-KVEKMYVPALIFGQLLTSSNYHDDEKKVTGGRNGYGAKLCNIFSTKFTVQ 180

Query: 173 V--ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLL 228
                   +F Q +   +  +   + +    +  T ITF+PD   F  +       A ++
Sbjct: 181 TASREYKKMFKQTWMDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMV 240

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           +     A  +  VK   + +K   +              G ++Y+   L+++   +    
Sbjct: 241 RRAYDIAGSTKDVKVFLNGNKLPVK--------------GFRSYVDMYLKDKLDETGNSL 286

Query: 289 TGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
               E+        E  +   E+  +  S+ N+I T +GG H   +   +   +      
Sbjct: 287 KVIHEQVNH---RWEVCLTMSEKGFQQISFVNSIATSKGGRHVHYVADQIVTKLVD-VVK 342

Query: 349 TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
            +NK  +++ +  +       ++  I  P F  QTK  +            L + F    
Sbjct: 343 KKNKGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQPKSFGSTCQLSEKFIKAA 402

Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFI 468
           +        +L WV  +++  ++  K+    +   I+ +       D     +    L +
Sbjct: 403 IG-CGIVESILNWVKFKAQ--VQLNKKCSAVKHNRIKGIPKLDDANDAGGRNSTECTLIL 459

Query: 469 VEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
            EGDSA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +G + +
Sbjct: 460 TEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYK 519

Query: 526 SQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581
             Y +ED    LRY K++IMTD D DG+HI  LL+ F +     L+  + L     P+ +
Sbjct: 520 KNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVK 579

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           +++  + +  +     ++       H   K ++  +KGLG   + + KE   D  +   +
Sbjct: 580 VSKNKQEMAFYSLPEFEEWKSSTPNH--KKWKVKYYKGLGTSTSKEAKEYFADMKRHR-I 636

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           + + +           + +K    + D+R +++  
Sbjct: 637 QFKYS-GPEDDAAISLAFSK---KQIDDRKEWLTN 667


>gi|292830|gb|AAA61209.1| DNA topoisomerase II (EC 5.99.1.3) [Homo sapiens]
          Length = 1531

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 140/695 (20%), Positives = 270/695 (38%), Gaps = 69/695 (9%)

Query: 17  QGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD------ 70
           Q  +E ++ +    +  A    S    Y          LE + +RP  YIG  +      
Sbjct: 7   QPVNENMQVNKIKKNEDAKKRLSVERIYQKK-----TQLEHILLRPDTYIGSVELVTQQM 61

Query: 71  ----------------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDN 112
                              L+ +F E++ NA D        + I V++D  N  +++ +N
Sbjct: 62  WVYDEDVGINYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNN 121

Query: 113 GRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVT 172
           G+GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V 
Sbjct: 122 GKGIPVVEH-KVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 180

Query: 173 V--ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLL 228
                   +F Q +   +  +   + +    +  T ITF+PD   F  +       A ++
Sbjct: 181 TASREYKKMFKQTWMDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMV 240

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           +     A  +  VK   + +K   +              G ++Y+   L+++   +    
Sbjct: 241 RRAYDIAGSTKDVKVFLNGNKLPVK--------------GFRSYVDMYLKDKLDETGNSL 286

Query: 289 TGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
               E+        E  +   E+  +  S+ N+I T +GG H   +   +   +      
Sbjct: 287 KVIHEQVNH---RWEVCLTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLVD-VVK 342

Query: 349 TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
            +NK  +++ +  +       ++  I  P F  QTK  +            L + F    
Sbjct: 343 KKNKGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQPKSFGSTCQLSEKFIKAA 402

Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFI 468
           +        +L WV  +++  ++  K+    +   I+ +       D     +    L +
Sbjct: 403 IG-CGIVESILNWVKFKAQ--VQLNKKCSAVKHNRIKGIPKLDDANDAGGRNSTECTLIL 459

Query: 469 VEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
            EGDSA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +G + +
Sbjct: 460 TEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYK 519

Query: 526 SQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581
             Y +ED    LRY K++IMTD D DG+HI  LL+ F +     L+  + L     P+ +
Sbjct: 520 KNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVK 579

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           +++  + +  +     ++       H   K ++  +KGLG   + + KE   D  +   +
Sbjct: 580 VSKNKQEMAFYSLPEFEEWKSSTPNH--KKWKVKYYKGLGTSTSKEAKEYFADMKRHR-I 636

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           + + +           + +K    + D+R +++  
Sbjct: 637 QFKYS-GPEDDAAISLAFSK---KQIDDRKEWLTN 667


>gi|154151176|ref|YP_001404794.1| DNA gyrase, B subunit [Candidatus Methanoregula boonei 6A8]
 gi|153999728|gb|ABS56151.1| DNA gyrase, B subunit [Methanoregula boonei 6A8]
          Length = 708

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 166/491 (33%), Positives = 253/491 (51%), Gaps = 21/491 (4%)

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
               GTRI F PD  IF     FD   L    +  A+L+  +    + ++         +
Sbjct: 233 NKLTGTRIHFVPDASIFETTT-FDYDVLAHRLRELAFLNAGLTIIITDER-------TGD 284

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-Y 318
              + + GGL  +++   E   ++        T+K   ++  +E A+ +     E    Y
Sbjct: 285 SATYCYAGGLSEFVKYLNEGNEVLHPNPIYI-TKKDAENKLDLEVAMQYTTGYDEKLYTY 343

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR---AISIISDDLMISAVGILSVFIR 375
            N++ T EGGTH  G R A+TRGI   A+     +    +++  +D+      ++SV + 
Sbjct: 344 VNSVNTREGGTHLEGFRSAITRGINVVAKRNGIIKENAQVTLRGEDVREGLTSVVSVKMA 403

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
            P+F GQTK +L +   +  V++ +      Y  +NP     ++E  +  ++ R   R  
Sbjct: 404 NPQFEGQTKMRLGNSSVKGIVDSLVYAALTEYFDENPGVLKIIVEKALSAAKAREAARNA 463

Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           R+   RK+++    LPGKL+DCS+     +E++IVEGDSAGGSAKQ R+R  QA+LPLRG
Sbjct: 464 RDLARRKSSLESAGLPGKLSDCSERDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRG 523

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           KILNV  AG  +I  N +I  L+ A+G     ++  E  RY +++IMTDADVDGAHI +L
Sbjct: 524 KILNVEKAGEHQILKNAEIQTLINAIGTGIGEKFDPERARYHRIVIMTDADVDGAHIRTL 583

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           LLTFFY+ M  LIE  ++++  PPLFRI +G +  Y + E   QK+       G   + I
Sbjct: 584 LLTFFYRYMRKLIELGYVYIAQPPLFRIAKGKEEKYVYKEAEMQKVSAAM---GDKGVSI 640

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
            R+KGLGEM A QL +T MD   R  L+V I        +  +    LMG   + R  FI
Sbjct: 641 QRYKGLGEMNAQQLWDTTMDPENRIFLKVSIEDAY----EADEMFKTLMGKDVEIRKNFI 696

Query: 675 QERASFIDDVG 685
              A  + ++ 
Sbjct: 697 MRHAKEVTNLD 707



 Score =  243 bits (620), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 88/159 (55%), Positives = 112/159 (70%), Gaps = 1/159 (0%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +D YDAS I +LEGL+PVR RP MYIG TD + LHHL  EV+DN++DE +AG+ N I V 
Sbjct: 2   TDTYDASHITVLEGLQPVRERPAMYIGSTDTRGLHHLVYEVVDNSIDEALAGFCNRICVV 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +G L V DNGRGIPV+   K    S LE++LT LHAGGKFD  TY++SGGLHGVG+S
Sbjct: 62  INKDGSLMVEDNGRGIPVDTMEKNHK-SALEVVLTVLHAGGKFDKETYQVSGGLHGVGVS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           VVNALS+ L   V R   I+  +FS+G    PL  +E+ 
Sbjct: 121 VVNALSNWLSARVYRDGNIYEMRFSQGKTTLPLTTREET 159


>gi|19913406|ref|NP_001058.2| DNA topoisomerase 2-alpha [Homo sapiens]
 gi|13959709|sp|P11388|TOP2A_HUMAN RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
           topoisomerase II, alpha isozyme
 gi|3869316|gb|AAC77388.1| topoisomerase II alpha [Homo sapiens]
 gi|119581067|gb|EAW60663.1| topoisomerase (DNA) II alpha 170kDa, isoform CRA_c [Homo sapiens]
 gi|187954517|gb|AAI40792.1| TOP2A protein [Homo sapiens]
 gi|306921645|dbj|BAJ17902.1| topoisomerase (DNA) II alpha 170kDa [synthetic construct]
          Length = 1531

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 140/695 (20%), Positives = 270/695 (38%), Gaps = 69/695 (9%)

Query: 17  QGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD------ 70
           Q  +E ++ +    +  A    S    Y          LE + +RP  YIG  +      
Sbjct: 7   QPVNENMQVNKIKKNEDAKKRLSVERIYQKK-----TQLEHILLRPDTYIGSVELVTQQM 61

Query: 71  ----------------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDN 112
                              L+ +F E++ NA D        + I V++D  N  +++ +N
Sbjct: 62  WVYDEDVGINYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNN 121

Query: 113 GRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVT 172
           G+GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V 
Sbjct: 122 GKGIPVVEH-KVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 180

Query: 173 V--ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLL 228
                   +F Q +   +  +   + +    +  T ITF+PD   F  +       A ++
Sbjct: 181 TASREYKKMFKQTWMDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMV 240

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           +     A  +  VK   + +K   +              G ++Y+   L+++   +    
Sbjct: 241 RRAYDIAGSTKDVKVFLNGNKLPVK--------------GFRSYVDMYLKDKLDETGNSL 286

Query: 289 TGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
               E+        E  +   E+  +  S+ N+I T +GG H   +   +   +      
Sbjct: 287 KVIHEQVNH---RWEVCLTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLVD-VVK 342

Query: 349 TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
            +NK  +++ +  +       ++  I  P F  QTK  +            L + F    
Sbjct: 343 KKNKGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQPKSFGSTCQLSEKFIKAA 402

Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFI 468
           +        +L WV  +++  ++  K+    +   I+ +       D     +    L +
Sbjct: 403 IG-CGIVESILNWVKFKAQ--VQLNKKCSAVKHNRIKGIPKLDDANDAGGRNSTECTLIL 459

Query: 469 VEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
            EGDSA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +G + +
Sbjct: 460 TEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYK 519

Query: 526 SQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581
             Y +ED    LRY K++IMTD D DG+HI  LL+ F +     L+  + L     P+ +
Sbjct: 520 KNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVK 579

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           +++  + +  +     ++       H   K ++  +KGLG   + + KE   D  +   +
Sbjct: 580 VSKNKQEMAFYSLPEFEEWKSSTPNH--KKWKVKYYKGLGTSTSKEAKEYFADMKRHR-I 636

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           + + +           + +K    + D+R +++  
Sbjct: 637 QFKYS-GPEDDAAISLAFSK---KQIDDRKEWLTN 667


>gi|168011945|ref|XP_001758663.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690273|gb|EDQ76641.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1238

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 142/706 (20%), Positives = 263/706 (37%), Gaps = 71/706 (10%)

Query: 13  PPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-- 70
            P++     +      +  +    ++S  + Y          LE + +RP  Y+G  +  
Sbjct: 1   APRAPKVPLQSSSGFNVDANDPHGDKSIEETYQKK-----TQLEHILLRPDTYVGSIEKY 55

Query: 71  -------------------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTV 109
                                 L+ +F E++ NA D        + ++V +D +  F++V
Sbjct: 56  TQTLWVYEDGKMVNRSITFVPGLYKIFDEILVNAADNKQRDPSMDTVKVEIDIDQNFISV 115

Query: 110 VDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDEL 169
            +NG G+PVE H K       E+I   L     +++S  + +GG +G G  + N  S E 
Sbjct: 116 YNNGAGVPVEIH-KEEGVYVPEMIFGHLLTSSNYNDSEKKTTGGRNGYGAKLANIFSTEF 174

Query: 170 HVTVARQNTIFSQK--FSRGIPLSPLEKKEKVRNK-RGTRITFRPDPKIFGDKA--GFDA 224
            +  A        K  F+  + L    K    +     T+++F+PD   F          
Sbjct: 175 TIETADGTRQRRYKQIFTNNMSLKSEPKITTCKPYENWTKVSFKPDLSKFNMTHLESDVV 234

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
           A + K     A   G         K    +          F   +  YL     NR    
Sbjct: 235 ALMSKRVVDIAGCIG---------KGCKVELNGKRLPIKSFQDYVGLYLSVANFNREEPL 285

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKK 344
             I+   +++        E  ++  +      S+CN+I T  GGTH + +   +   +  
Sbjct: 286 PRIYEKVSDR-------WEICVSLSDGQFNQVSFCNSIATIRGGTHVAYVADQIVSHV-- 336

Query: 345 YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF 404
              + +  +   +    +       ++  I  P F  QTK  L +  +    +  L   F
Sbjct: 337 LGLVNKKNKTAGVKPFQIKNHMWVFVNALINNPTFDSQTKETLTTRASSFGSKCELSAEF 396

Query: 405 DHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHG 463
              + +       ++E V+  ++ +  +  ++    ++  I  +       D     +  
Sbjct: 397 LKKVAKC-----GVVENVLTWADFKQSKELKKNDGAKRQRITGIPKLDDANDAGGRSSEQ 451

Query: 464 TELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
             L + EGDSA   A    +   R    V PLRGK+LNV  A  ++I  N +I ++ + L
Sbjct: 452 CTLILTEGDSAKALAMSGISVVGRDKYGVFPLRGKLLNVREASHKQIMENAEITNIKRIL 511

Query: 521 GCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK-HLFLISPP 578
           G +    Y     LRY  ++IMTD D DG+HI  LL+ F +     L++    L     P
Sbjct: 512 GLQHGKDYDNTKSLRYGHLMIMTDQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITP 571

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           + + +   K +  +     +   E      KG   I  +KGLG   + + KE   + +K 
Sbjct: 572 IVKASNKQKMLSFYTMPEYEAWKESLNGETKG-WTIKYYKGLGTSTSKEGKEYFRELSKH 630

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ--ERASFID 682
              +    +        + + +K    K + R  +++  E  +F+D
Sbjct: 631 --KKDFKWESEMDGDAIEMAFSK---KKIEARKTWLRHYEPGTFLD 671


>gi|189464618|ref|ZP_03013403.1| hypothetical protein BACINT_00961 [Bacteroides intestinalis DSM
           17393]
 gi|189436892|gb|EDV05877.1| hypothetical protein BACINT_00961 [Bacteroides intestinalis DSM
           17393]
          Length = 623

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 194/665 (29%), Positives = 306/665 (46%), Gaps = 76/665 (11%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDE-----KALHHLFSEVIDNAMDEVIAGYANLI 97
            Y   +IR L+ +E +R+R GMYIG   +       ++ L  EV+DN++DE   G    I
Sbjct: 14  EYTEDNIRHLDDMEHIRVRSGMYIGRLGDGTQNDDGIYVLLKEVMDNSIDEFKMGAGKRI 73

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           E+S++ N  ++V D GRGIP     +          ++ L+ GGK+D+  ++ S GL+GV
Sbjct: 74  EISIEENLRVSVRDYGRGIPQGKLIE---------AVSKLNTGGKYDSKAFKKSVGLNGV 124

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           GI  VNALS+   V   R+  +    F +GI  S     E    + GT I F PD     
Sbjct: 125 GIKAVNALSNRFEVRSYREGKVRIAIFEKGILQSD--VTENSDEESGTYIFFEPD-STLF 181

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F A  +  + ++  YL+  +   ++  + I                GL+  L   +
Sbjct: 182 LNYSFQANFVEMLLRNYTYLNTGLSIIYNGQRII-------------SRHGLEDLLNDNM 228

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
             + L +     G+          +E A     +   E  S+ N   T +GGTH+S L+ 
Sbjct: 229 TAQGLYNIIHLKGE---------DIEIAFTHTNQYGEEYYSFVNGQHTTQGGTHQSALKE 279

Query: 337 ALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR-- 394
            + R IK++          +    D+    V  +++ + EP+F GQTKTKL S       
Sbjct: 280 HIARTIKEFYN-------KNQEYADIRNGIVAAIAINVEEPQFEGQTKTKLGSPSMSPGG 332

Query: 395 -----TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
                 V + ++   D+YL +NP+ A  +L+ + +  +ER       ++ R+ A +    
Sbjct: 333 VSVNKYVGDFIKTEVDNYLHKNPLVAEVMLQKIQDSEKERKAIAGVTKLARERAKKANLH 392

Query: 450 PGKLADCSQN--------IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             KL DC  +            + +FI EGDSA GS  ++R+ + QAV  LRGK LN   
Sbjct: 393 NRKLRDCRYHLNDGKGKDQETESCIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSYG 452

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
              + +  N++   L  AL          E LRY KVI  TDADVDG HI  LL+TFF Q
Sbjct: 453 LTKKVVYENEEFNLLQAALNIE----DGIEGLRYNKVIAATDADVDGMHIRLLLITFFLQ 508

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
              DLI++ H++++  PLFR+    K++Y + EE +QK + E   +     EI+RFKGLG
Sbjct: 509 FFPDLIKKGHVYILQTPLFRVRNKKKTLYCYTEEERQKAIAELGPN----PEITRFKGLG 564

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           E+   + +          L +V + K        ++ +   MG    ER  FI       
Sbjct: 565 EISPDEFRHFIG--KDMRLEQVSLRK----TDLVKELLEFYMGKNTMERQNFIINNLVIE 618

Query: 682 DDVGT 686
           +D+ +
Sbjct: 619 EDLAS 623


>gi|73966009|ref|XP_537646.2| PREDICTED: similar to DNA topoisomerase II, alpha isozyme isoform 1
           [Canis familiaris]
          Length = 1532

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 140/694 (20%), Positives = 269/694 (38%), Gaps = 69/694 (9%)

Query: 17  QGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD------ 70
           Q  +E ++ S    +  A    S    Y          LE + +RP  YIG  +      
Sbjct: 7   QPVNENMQISKTKKNEDAKKRLSIERIYQKK-----TQLEHILLRPDTYIGSVELVTQQM 61

Query: 71  ----------------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDN 112
                              L+ +F E++ NA D        + I V++D  N  +++ +N
Sbjct: 62  WVYDEDIGMNYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNN 121

Query: 113 GRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVT 172
           G+GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V 
Sbjct: 122 GKGIPVVEH-KVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 180

Query: 173 V--ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLL 228
                   +F Q +   +  +   +      +  T ITF+PD   F  +       A ++
Sbjct: 181 TASREYKKMFKQTWMDNMGRAGEMELRPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMV 240

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           +     A  +  VK   + +K   +              G ++Y+   L+++   +    
Sbjct: 241 RRAYDIAGSTKDVKVFLNGNKLPVK--------------GFRSYVDMYLKDKVDETGNPL 286

Query: 289 TGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
               E+        E  +   E+  +  S+ N+I T +GG H   +   +   +      
Sbjct: 287 KIIHEQ---VNPRWEVCLTMSEKGFQQISFVNSIATSKGGRHVDYIADQIVTKLVD-VVK 342

Query: 349 TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
            +NK  +++ +  +       ++  I  P F  QTK  +            L + F    
Sbjct: 343 KKNKGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQVKSFGSTCQLSEKFIKAA 402

Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFI 468
                    +L WV  +++  ++  K+    +   I+ +       D     ++   L +
Sbjct: 403 TG-CGIVESILNWVKFKAQ--IQLNKKCSAVKHNRIKGIPKLDDANDAGGRNSNECTLIL 459

Query: 469 VEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
            EGDSA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +G + +
Sbjct: 460 TEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYK 519

Query: 526 SQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581
             Y +ED    LRY K++IMTD D DG+HI  LL+ F +     L+  + L     P+ +
Sbjct: 520 KNYDDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVK 579

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           +++  + +  +     ++       H   K ++  +KGLG   + + KE   +  +   +
Sbjct: 580 VSKNKQEMAFYSLPEFEEWKSSTPNH--KKWKVKYYKGLGTSTSKEAKEYFANMKRHR-I 636

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675
           + + +           + +K    + D+R +++ 
Sbjct: 637 QFKYS-GPEDDAAISLAFSK---KQIDDRKEWLT 666


>gi|106734225|gb|ABF82589.1| DNA topoisomerase IV subunit beta [Exiguobacterium sp. A1]
          Length = 492

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 201/502 (40%), Positives = 290/502 (57%), Gaps = 14/502 (2%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIG T  K LHHL  E++DN++DE +AGY + I+V+++    + V DNGRGIPV+   K
Sbjct: 1   MYIGSTASKGLHHLVWEIVDNSIDEALAGYCDTIKVTIEPGNSILVEDNGRGIPVDIQEK 60

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
              +  +E+ILT LHAGGKF    Y++SGGLHGVG SVVNALS +L V V R   ++ Q 
Sbjct: 61  M-GRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTKLEVFVKRNEKLYYQA 119

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           + RG+P++ LE       + GT I F PD +IF +   +D   L    +  A+L+  +  
Sbjct: 120 YHRGVPVADLEIIG-TSEETGTMIRFFPDDEIFQETLEYDYDLLATRLRELAFLNKGLTI 178

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
             + D+        P    F++ GG+K+Y++    ++ ++  E       + G     VE
Sbjct: 179 EITDDR-----ADEPITRSFHYEGGIKSYVEHLNRSKEVVHEEPVYVHGNRDGI---EVE 230

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISD 360
            A+ + +     I S+ N I T EGGTHE+G + ALTR I  YA+     +     +  +
Sbjct: 231 VALQYNDGFAANIYSFTNNIPTHEGGTHETGFKTALTRVINDYAKKFGLMKEADGTLSGE 290

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D+      I+S+    P+F GQTKTKL + DA+   +      F+ ++++NP  A  ++E
Sbjct: 291 DVREGMTAIVSIKHPNPQFEGQTKTKLGNSDARTATDTLFSSAFEQFMMENPTSARAIVE 350

Query: 421 W-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
             ++        +R +    RK  +    LPGKLADCS   A  +E++IVEGDSAGGSAK
Sbjct: 351 KGMMASRARMAAKRARELTRRKGVLEVSSLPGKLADCSSRDATISEIYIVEGDSAGGSAK 410

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
             R+R  QA+LP+RGKILNV  A  +KI  + +I  ++ ALG    S++  E  RY KVI
Sbjct: 411 SGRDRHFQAILPIRGKILNVEKARLDKILGSNEIRTIITALGTSIGSEFNIEKARYHKVI 470

Query: 540 IMTDADVDGAHIASLLLTFFYQ 561
           IMTDADVDGAHI +LLLTFFY+
Sbjct: 471 IMTDADVDGAHIRTLLLTFFYR 492


>gi|167763905|ref|ZP_02436032.1| hypothetical protein BACSTE_02287 [Bacteroides stercoris ATCC
           43183]
 gi|167698021|gb|EDS14600.1| hypothetical protein BACSTE_02287 [Bacteroides stercoris ATCC
           43183]
          Length = 662

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 191/683 (27%), Positives = 316/683 (46%), Gaps = 76/683 (11%)

Query: 25  KSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFS 79
            +G    +      S+   Y+  +IR L+ +E +R+R GMYIG       ++  ++ L  
Sbjct: 35  SAGYEEKTTGTNTGSSEVEYNEDNIRHLDDMEHIRVRSGMYIGRLGDGSQNDDGIYVLLK 94

Query: 80  EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139
           EV+DN++DE   G    IEV+++ N  ++V D GRGIP            +E + + L+ 
Sbjct: 95  EVMDNSIDEFKMGAGKRIEVNIEENLRVSVRDYGRGIPQGK--------LVEAV-SKLNT 145

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGK+D+  ++ S GL+GVGI  VNALS    V   R   + +  F +G+  S L   E  
Sbjct: 146 GGKYDSKAFKKSVGLNGVGIKAVNALSSRFEVRSYRDGKVRTAIFEKGVLQSDLT--EDS 203

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
             + GT I F PD  +F +   F    +  + ++  YL+  +   ++  + I+       
Sbjct: 204 TEENGTYIFFEPDNTLFTNY-SFQNQFVETLLRNYTYLNTGLTFIYNGQRIISRHGLEDL 262

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
            ++     GL   +  K E+                      +E A     +   E  S+
Sbjct: 263 LKDNMTSEGLYDIVHLKGED----------------------IEIAFTHTNQYGEEYYSF 300

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPE 378
            N   T +GGTH++ L+  + R IK++          +    D+    V  +++ + EP 
Sbjct: 301 VNGQHTTQGGTHQTALKEHIARTIKEFYN-------KNQDYADIRNGLVAAIAIDVEEPM 353

Query: 379 FAGQTKTKLVSLDA-------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           F  QTKTKL S +         + V + ++   D+YL +NP+ +  +L+ + +  +ER  
Sbjct: 354 FESQTKTKLGSNNMWPEGPTVNKYVGDFIKTEVDNYLHKNPLVSEVMLQKIQDSEKERKA 413

Query: 432 RRKQREVNRKTAIRKLRLPGKLADCSQN--------IAHGTELFIVEGDSAGGSAKQARN 483
                ++ R+ A +      KL DC  +            + +FI EGDSA GS  ++R+
Sbjct: 414 IAGVTKLARERAKKANLHNRKLRDCRFHLSDGKGKDQEAESCIFITEGDSASGSITKSRD 473

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTD 543
            + QAV  LRGK LN      + +  N++   L  AL          E LRY KVI+ TD
Sbjct: 474 VNTQAVFSLRGKPLNSYGLTKKVVYENEEFNLLQAALNIE----DGIEGLRYNKVIVATD 529

Query: 544 ADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEE 603
           ADVDG HI  L++TFF Q   DLI++ H++++  PLFR+    K+ Y + E+ + K +EE
Sbjct: 530 ADVDGMHIRLLIITFFLQFFPDLIKKGHVYILQTPLFRVRNKKKTSYCYTEDERVKAIEE 589

Query: 604 FKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLM 663
              +     EI+RFKGLGE+   + +          L +V + K        ++ +   M
Sbjct: 590 LGPN----PEITRFKGLGEISPDEFRHFIG--KDMRLEQVSLRK----TDLVKELLEFYM 639

Query: 664 GTKADERFKFIQERASFIDDVGT 686
           G    ER  FI +     +D+ +
Sbjct: 640 GKNTMERQNFIIDNLVIEEDLAS 662


>gi|329956512|ref|ZP_08297109.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides clarus YIT 12056]
 gi|328524409|gb|EGF51479.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides clarus YIT 12056]
          Length = 662

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 188/677 (27%), Positives = 314/677 (46%), Gaps = 76/677 (11%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNA 85
            +      ++   Y+  +IR L+ +E +R+R GMYIG       ++  ++ L  EV+DN+
Sbjct: 41  KTTGANTGNSEVEYNEDNIRHLDDMEHIRVRSGMYIGRLGDGSQNDDGIYVLLKEVMDNS 100

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE   G    IEV+++ N  ++V D GRGIP            +E + + L+ GGK+D+
Sbjct: 101 IDEFKMGAGKRIEVNIEENLRVSVRDYGRGIPQGK--------LVEAV-SKLNTGGKYDS 151

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             ++ S GL+GVGI  VNALS    V   R   + +  F +G+  S + +      + GT
Sbjct: 152 KAFKKSVGLNGVGIKAVNALSSRFEVRSYRDGKVRAVIFEKGVLQSDITQ--DSTEENGT 209

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            I F PD  +F +   F    +  + ++  YL+  +   ++  + I+        ++   
Sbjct: 210 YIFFEPDNTLFLNY-SFQNQFVETLLRNYTYLNTGLTFIYNGQRIISRHGLEDLLKDNMT 268

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
             GL   +  K E+                      +E A     +   E  S+ N   T
Sbjct: 269 SEGLYDIVHLKGED----------------------IEIAFTHTNQYGEEYYSFVNGQHT 306

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
            +GGTH++ L+  + R IK++          +    D+    V  +++ + EP F  QTK
Sbjct: 307 TQGGTHQTALKEHIARTIKEFFN-------KNQDYADIRNGLVAAIAIDVEEPMFESQTK 359

Query: 385 TKLVSLDA-------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           TKL S +         + V + ++   D+YL +NP+ +  +L+ + +  +ER       +
Sbjct: 360 TKLGSNNMWPEGPTVNKYVGDFIKTEVDNYLHKNPLVSEVMLQKIQDSEKERKAIAGVTK 419

Query: 438 VNRKTAIRKLRLPGKLADCSQN--------IAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
           + R+ A +      KL DC  +            + +FI EGDSA GS  ++R+ + QAV
Sbjct: 420 LARERAKKANLHNRKLRDCRFHLSDGKGKDQEAESCIFITEGDSASGSITKSRDVNTQAV 479

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549
             LRGK LN      + +  N++   L  AL          E LRY KVI+ TDADVDG 
Sbjct: 480 FSLRGKPLNSYGLTKKVVYENEEFNLLQAALNIE----DGIEGLRYNKVIVATDADVDGM 535

Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK 609
           HI  L++TFF Q   DLI++ H++++  PLFR+    K+ Y + E+ + K +EE   +  
Sbjct: 536 HIRLLIITFFLQFFPDLIKKGHVYILQTPLFRVRNKKKTNYCYTEDERVKAIEELGPN-- 593

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669
              EI+RFKGLGE+   + K          L +V + K        ++ +   MG    E
Sbjct: 594 --PEITRFKGLGEISPDEFKHFIG--KDMRLEQVSLRK----TDLVKELLEFYMGKNTME 645

Query: 670 RFKFIQERASFIDDVGT 686
           R  FI +     +D+ +
Sbjct: 646 RQNFIIDNLVIEEDLAS 662


>gi|218131607|ref|ZP_03460411.1| hypothetical protein BACEGG_03227 [Bacteroides eggerthii DSM 20697]
 gi|217985910|gb|EEC52249.1| hypothetical protein BACEGG_03227 [Bacteroides eggerthii DSM 20697]
          Length = 640

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 189/677 (27%), Positives = 312/677 (46%), Gaps = 76/677 (11%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNA 85
            + +    S    Y+  +IR L+ +E +R+R GMYIG       ++  ++ L  EV+DN+
Sbjct: 19  KATSANIGSNEVEYNEDNIRHLDDMEHIRVRSGMYIGRLGDGSQNDDGIYVLLKEVMDNS 78

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE   G    IEV+++ N  ++V D GRGIP     +          ++ L+ GGK+D+
Sbjct: 79  IDEFKMGAGKRIEVNIEDNLRVSVRDYGRGIPQGKLIE---------AVSKLNTGGKYDS 129

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             ++ S GL+GVGI  VNALS    V   R   + +  F +G+  S     E    + GT
Sbjct: 130 KAFKKSVGLNGVGIKAVNALSSRFEVRSYRDGKVRTVIFEKGVLQSD--VMEDSTEENGT 187

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            I F PD  +F +   F    +  + ++  YL+  +   ++  + I+        ++   
Sbjct: 188 YIFFEPDNTLFLNY-SFQNQFVETLLRNYTYLNTGLTFIYNGQRIISRHGLEDLLKDNMT 246

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
             GL   +  K E+                      +E A     +   E  S+ N   T
Sbjct: 247 SEGLYDIVHLKGED----------------------IEIAFTHTNQYGEEYYSFVNGQHT 284

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
            +GGTH++ L+  + R IK++          +    D+    V  +++ + EP F  QTK
Sbjct: 285 TQGGTHQTALKEHIARTIKEFYN-------KNQDYADIRNGLVAAIAIDVEEPMFESQTK 337

Query: 385 TKLVSLDA-------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           TKL S +         + V + ++   D++L +NP+ A  +L+ + +  +ER       +
Sbjct: 338 TKLGSNNMWPDGPTVNKYVGDFIKTEVDNFLHKNPLVAEVMLQKIQDSEKERKAIAGVTK 397

Query: 438 VNRKTAIRKLRLPGKLADCSQN--------IAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
           + R+ A +      KL DC  +            + +FI EGDSA GS  ++R+ + QAV
Sbjct: 398 LARERAKKANLHNRKLRDCRFHLSDGKGKEQETDSCIFITEGDSASGSITKSRDVNTQAV 457

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549
             LRGK LN      + +  N++   L  AL          E LRY KVI+ TDADVDG 
Sbjct: 458 FSLRGKPLNSYGLTKKVVYENEEFNLLQAALNIE----DGIEGLRYNKVIVATDADVDGM 513

Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK 609
           HI  L++TFF Q   DLI++ H++++  PLFR+    K+ Y + E+ + K +EE   +  
Sbjct: 514 HIRLLIITFFLQFFPDLIKKGHVYILQTPLFRVRNKKKTNYCYTEDERIKAIEELGPN-- 571

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669
              EI+RFKGLGE+   + K          L +V + K        ++ +   MG    E
Sbjct: 572 --PEITRFKGLGEISPDEFKHFIG--KDMRLEQVSLRK----TDLVKELLEFYMGKNTME 623

Query: 670 RFKFIQERASFIDDVGT 686
           R  FI +     +D+ +
Sbjct: 624 RQNFIIDNLVIEEDLAS 640


>gi|261414958|ref|YP_003248641.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261371414|gb|ACX74159.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302327568|gb|ADL26769.1| putative DNA topoisomerase IV, B subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 614

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 202/667 (30%), Positives = 310/667 (46%), Gaps = 76/667 (11%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-----KALHHLFSEVIDNAMDEVIAGYA 94
           A+  Y   SI+ LE  E +R+RPGMYIG   +       ++ L  E+IDN++DE + G  
Sbjct: 2   AATKYTEDSIKSLEWHEHIRLRPGMYIGKLGDGQSPDDGIYVLVKEIIDNSIDEFVMGAG 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             IE+++D +    V D GRGIP+           +   ++ ++ GGK+D+  ++ S GL
Sbjct: 62  KKIEINID-DHAARVRDYGRGIPLGK---------VIDCVSKINTGGKYDSEAFQKSVGL 111

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           +GVG   VNALS +  V   R   +   +FSRG+ +   ++      K GT I F PD  
Sbjct: 112 NGVGTKAVNALSTKFIVKSYRDGRMKQAEFSRGVLVQDYKEC-ATNEKNGTEIYFEPDAD 170

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   F  A + +   + AYL+  ++   +                +  P GL   L 
Sbjct: 171 IFKNYR-FLPAYMEEKVWNYAYLNNGLQLVMNDK-------------VYTSPNGLLDLLN 216

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333
             +++        F GK          +E A     +  E    + N   T +GGTH+  
Sbjct: 217 KHVDDSIRYPVIHFKGK---------DIECAFTHGNQYGEHYYSFVNGQHTTQGGTHQQA 267

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL--- 390
            R  L +G + +      K+ +     D+    +G +SV I+EP F  QTKTKL S    
Sbjct: 268 FREGLVKGARDHF-----KKDLD--PQDVRNCVIGAISVRIQEPVFESQTKTKLGSTTVA 320

Query: 391 ----DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
                 +  V + +   FD++L +NP     LL  + +   ER      +++  + A + 
Sbjct: 321 PGGAQLRSWVVDYVASEFDNFLHKNPETEKALLNRITQNERERKEIAGIKKLANERAKKA 380

Query: 447 LRLPGKLADCSQNI-------AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
                KL DC  ++          + +FI EGDSA GS  +ARN   QAV  LRGK LN 
Sbjct: 381 NLHNRKLRDCKIHLTDVKNALNRESMIFITEGDSASGSITKARNVQTQAVFSLRGKPLNS 440

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
                + +  N++   L  AL          E+LRY+KVII TDADVDG HI  LL+TFF
Sbjct: 441 FGMTKKVVYENEEFNLLQHALDIENGL----ENLRYDKVIIATDADVDGMHIRLLLMTFF 496

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
            Q   +L+EQKHL+++  PLFR+     + Y +DE  + K  +E    GK  +EI+RFKG
Sbjct: 497 LQFFPELVEQKHLYILQTPLFRVRNKQVTKYCYDEAERDKAAKEI---GKTGLEITRFKG 553

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER-- 677
           LGE+   +  +  ++ + R L  V I  D          +   MG     R + I     
Sbjct: 554 LGEISPEEFGQ-FINEDMR-LETVSIPPD----ASLGKMLEYYMGNNTPMRQEHIVLNLR 607

Query: 678 ASFIDDV 684
           A  ++++
Sbjct: 608 AEAVEEL 614


>gi|212692587|ref|ZP_03300715.1| hypothetical protein BACDOR_02084 [Bacteroides dorei DSM 17855]
 gi|237709101|ref|ZP_04539582.1| DNA topoisomerase IV subunit B [Bacteroides sp. 9_1_42FAA]
 gi|237724417|ref|ZP_04554898.1| DNA topoisomerase IV subunit B [Bacteroides sp. D4]
 gi|265752624|ref|ZP_06088193.1| DNA topoisomerase IV subunit B [Bacteroides sp. 3_1_33FAA]
 gi|212664872|gb|EEB25444.1| hypothetical protein BACDOR_02084 [Bacteroides dorei DSM 17855]
 gi|229437286|gb|EEO47363.1| DNA topoisomerase IV subunit B [Bacteroides dorei 5_1_36/D4]
 gi|229456797|gb|EEO62518.1| DNA topoisomerase IV subunit B [Bacteroides sp. 9_1_42FAA]
 gi|263235810|gb|EEZ21305.1| DNA topoisomerase IV subunit B [Bacteroides sp. 3_1_33FAA]
          Length = 625

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 189/670 (28%), Positives = 296/670 (44%), Gaps = 79/670 (11%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGY 93
           + +  Y   +IR L  +E VR RPGMYIG        E  ++ L  EV+DN++DE     
Sbjct: 10  NPAVEYTDDNIRHLSDMEHVRTRPGMYIGKLGDGSHAEDGIYVLLKEVLDNSIDEFKMQA 69

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
              IE+ ++ N  ++V D GRGIP     +          ++ L+ GGK+D+  ++ S G
Sbjct: 70  GKKIEIIIEENLRVSVRDYGRGIPQGKLIE---------AVSVLNTGGKYDSKAFKKSVG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           L+GVG+  VNALS    V   R   +    F++G  L+   +      + GT I F PD 
Sbjct: 121 LNGVGVKAVNALSSRFEVRSYRDGKVRIATFAKGDLLTDTTQN--TTEENGTYIFFEPDN 178

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            +  +   F    +  M ++  YL+  +   ++  +                  GL   L
Sbjct: 179 -LLFENYSFRPEFVETMLRNYTYLNTGLAIIYNGQRI-------------LSRNGLVDLL 224

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
              +    L       G+          +E A     +   E  S+ N   T +GGTH+S
Sbjct: 225 NDNMTAVGLYPIIHLKGE---------DIEIAFTHTGQYGEEYYSFVNGQHTTQGGTHQS 275

Query: 333 GLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
             +  + R IK+Y          ++   D+    V  ++V + EP F  QTK KL S + 
Sbjct: 276 AFKEHIARTIKEYFN-------KNMDYSDIRNGLVAAIAVNVEEPLFESQTKIKLGSTNM 328

Query: 393 QR-------TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIR 445
                     V + ++   D+YL ++   A  +L+ + E  +ER       ++ R+ A +
Sbjct: 329 APGGPTVNKFVGDFVKTEVDNYLHKHTDVADVMLQKIQESEKERKAIAGVTKLARERAKK 388

Query: 446 KLRLPGKLADCSQN-------IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
                 KL DC  +           + +FI EGDSA GS  ++R+ + QAV  LRGK LN
Sbjct: 389 ANLHNRKLRDCRFHLNDVKGDKKEESCIFITEGDSASGSITKSRDVNTQAVFSLRGKPLN 448

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
                 + +  N++   L  AL          E LRY KVI+ TDADVDG HI  LL+TF
Sbjct: 449 SYGLTKKIVYENEEFNLLQAALNIE----DGMEGLRYNKVIVATDADVDGMHIRLLLITF 504

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEI 614
           F Q   DLI++ H++++  PLFR+    K    +VY + EE +   +E    +     EI
Sbjct: 505 FLQFFPDLIKKGHVYILQTPLFRVRNRKKGVYETVYCYSEEERIAAIERLSPN----PEI 560

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
           +RFKGLGE+   + K          L +V + K        ++ +   MG    ER  FI
Sbjct: 561 TRFKGLGEISPDEFKHFIG--KDMRLEQVSLRK----TDLVKELLEFYMGKNTMERQNFI 614

Query: 675 QERASFIDDV 684
            +     +D+
Sbjct: 615 IDNLVIEEDI 624


>gi|258569355|ref|XP_002543481.1| DNA topoisomerase 2 [Uncinocarpus reesii 1704]
 gi|237903751|gb|EEP78152.1| DNA topoisomerase 2 [Uncinocarpus reesii 1704]
          Length = 1704

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 157/722 (21%), Positives = 277/722 (38%), Gaps = 72/722 (9%)

Query: 7   DLFSTLPPQSQGSSEKLKKSGEIPDSP------AFANQSASDNYDASSIRILEGLEPVRM 60
            + S+ PPQ    S+    S +   +P        A+ + S        + L   E +  
Sbjct: 84  SILSSTPPQPPKKSKTTAGSKKSAGNPLAAMENEAASTAQSKGNSGDQYQKLTQKEHIIR 143

Query: 61  RPGMYIGGTD-----------------------EKALHHLFSEVIDNAMDEVIAGY-ANL 96
           RP  YIG  +                          L+ +F E++ NA D        + 
Sbjct: 144 RPDTYIGSVERTQQQMWVFNSTTEQMEFREVSYVPGLYKIFDEILVNAADNKQRDSSMSE 203

Query: 97  IEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
           I V+LD   G ++V +NGRGIPVE H K       E+I   L     +D+   +++GG +
Sbjct: 204 IRVTLDKEAGEISVWNNGRGIPVEIHSK-EKIYIPELIFGHLLTSSNYDDDQAKVTGGRN 262

Query: 156 GVGISVVNALSDELHVTVARQN--TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           G G  + N  S E  V  A  N    + Q +   + +    K   V+    T+ITF+PD 
Sbjct: 263 GYGAKLCNIFSTEFTVETADSNSKKKYKQTWKDNMSVMGKAKIADVKGDDYTKITFKPDF 322

Query: 214 KIF-GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
             F  +    D   L+K       L+G  K     +       G  +  E Y        
Sbjct: 323 MKFGMEGMDDDFEALVKRR--VYDLAGTCKVNVKLNGTKIALRGFKKYMEMYTKAIKNER 380

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHES 332
            +    ++S I ++          +     E   A  + + +  S+ N+I T  GGTH +
Sbjct: 381 GEEATSDKSEIVTD----------SPDPRWEIGFAVSDGSFQQVSFVNSIATTSGGTHVN 430

Query: 333 GLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
            +   +   + + +   +NK    +    +       ++  I  P F  QTK +L +  +
Sbjct: 431 YISDQICAKLAE-SVKKKNKTGPLLKPAQIRNHIFLFVNCLIVNPAFTSQTKEQLTTKPS 489

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
           Q   +  L + F   +++  +        ++  +E++  +  ++    + A         
Sbjct: 490 QFGSKCTLSEDFLKKILKTQVMQN-----IMHFAEQKADQILKKTDGSRRARMNNPKLTD 544

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRN 509
                    H   L + EGDSA G A   R         V PLRGK+LNV  A  ++I  
Sbjct: 545 ANKAGTKEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQISK 604

Query: 510 NQQIMDLVQALGCRTRSQY-REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           NQ+I ++   LG + + +Y     LRY  ++IMTD D DG+HI  LL+ +       L++
Sbjct: 605 NQEIQNIKNFLGLQHKKEYADTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPSLLK 664

Query: 569 Q-KHLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
               L     P+ ++ +G     T +         +   E        + +   +KGLG 
Sbjct: 665 IPGFLIEFITPIVKVWKGDPKQPTATKSFFTIPEYEAWKEVHG--HDRRWDKKYYKGLGT 722

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE--RASF 680
                 +    D ++       +    N  +    + +K    KADER +++++    ++
Sbjct: 723 SSTEDAEIYFRDLDRHLKEFHALQD--NEAQLIDLAFSK---KKADERKEWLRQFKPGTY 777

Query: 681 ID 682
           +D
Sbjct: 778 LD 779


>gi|154490322|ref|ZP_02030583.1| hypothetical protein PARMER_00555 [Parabacteroides merdae ATCC
           43184]
 gi|154088933|gb|EDN87977.1| hypothetical protein PARMER_00555 [Parabacteroides merdae ATCC
           43184]
          Length = 621

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 192/660 (29%), Positives = 296/660 (44%), Gaps = 75/660 (11%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           Y+   I+ L+ +E +R RPGMYIG        +  ++ L  EV+DN++DE + GY   IE
Sbjct: 14  YNDDDIKTLDWMEHIRRRPGMYIGKLGDGSYADDGIYVLLKEVLDNSIDEYMMGYGKTIE 73

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++   G ++V D GRG+P+           +  + + ++ G K+D+  ++ S GL+GVG
Sbjct: 74  VTV-EEGTVSVRDYGRGVPLGK---------VVDVSSKMNTGAKYDSKAFKKSVGLNGVG 123

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           I  VNALS    +T  R       ++++ +               GT   F PD +IF D
Sbjct: 124 IKAVNALSSYFLITSYRDGECKRVEYNKAVITEEAPIC-PTEEANGTLTYFIPDKEIFKD 182

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              +    +  + ++  +L+  +   ++  K             F+   GL   L   + 
Sbjct: 183 Y-QYKDEYIESLLKNYVFLNSGLTIVFNGKK-------------FHSRNGLVDLLNENMT 228

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
              L       G+          +E  I    +   E  S+ N   T +GGTH S  R A
Sbjct: 229 TEPLYPIVHLKGE---------DIEVVITHSNQYGEEYYSFVNGQHTTQGGTHLSAFREA 279

Query: 338 LTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR--- 394
           L R IK+Y          +    D+    V  +S+ + EP F  QTKTKL S D      
Sbjct: 280 LGRVIKEYYN-------KNFEYSDIRAGVVAAISIKVEEPVFESQTKTKLGSKDMGPDGP 332

Query: 395 ----TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
                V + ++   D+YL +N   +  LL  + E  +ER       ++ R+ A +     
Sbjct: 333 SVGKFVGDFIKKELDNYLHKNAETSDALLRKIQESEKERKAIAGVTKLARERAKKANLHN 392

Query: 451 GKLADCSQNIAH-------GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
            KL DC  ++          + +FI EGDSA GS  ++R+ + QAV  LRGK LN     
Sbjct: 393 KKLRDCRIHLNDTKGDNLEDSCIFITEGDSASGSITKSRDPNLQAVFSLRGKPLNSFGLT 452

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            + +  N++   L  AL          E LRY KVII TDADVDG HI  LL+TFF Q  
Sbjct: 453 KKIVYENEEFNLLQAALNIEDGL----EGLRYNKVIIATDADVDGMHIRLLLITFFLQFF 508

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
            DLI++ H++++  PLFR+    K+ Y + EE +   +    K+     EI+RFKGLGE+
Sbjct: 509 PDLIKRNHVYILQTPLFRVRNKQKTWYCYSEEERVNAIAAAGKNA----EITRFKGLGEI 564

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
              + K          L  V + K+       +D +   MG    ER  FI +     +D
Sbjct: 565 SPDEFKHFIG--KDIRLDPVTMKKE----DLVKDMLEFYMGKNTMERQNFIIDNLVVEED 618


>gi|317474758|ref|ZP_07934032.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316909439|gb|EFV31119.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 640

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 189/677 (27%), Positives = 312/677 (46%), Gaps = 76/677 (11%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNA 85
            + +    S    Y+  +IR L+ +E +R+R GMYIG       ++  ++ L  EV+DN+
Sbjct: 19  KATSANIGSNEVEYNEDNIRHLDDMEHIRVRSGMYIGRLGDGSQNDDGIYVLLKEVMDNS 78

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE   G    IEV+++ N  ++V D GRGIP            +E + + L+ GGK+D+
Sbjct: 79  IDEFKMGAGKRIEVNIEDNLRVSVRDYGRGIPQGK--------LVEAV-SKLNTGGKYDS 129

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             ++ S GL+GVGI  VNALS    V   R   + +  F +G+  S     E    + GT
Sbjct: 130 KAFKKSVGLNGVGIKAVNALSSRFEVRSYRDGKVRTVIFEKGVLQSD--VTEDSTEENGT 187

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            I F PD  +F +   F    +  + ++  YL+  +   ++  + I+        ++   
Sbjct: 188 YIFFEPDNTLFLNY-SFQNQFVETLLRNYTYLNTGLTFIYNGQRIISRHGLEDLLKDNMT 246

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
             GL   +  K E+                      +E A     +   E  S+ N   T
Sbjct: 247 SEGLYDIVHLKGED----------------------IEIAFTHTNQYGEEYYSFVNGQHT 284

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
            +GGTH++ L+  + R IK++          +    D+    V  +++ + EP F  QTK
Sbjct: 285 TQGGTHQTALKEHIARTIKEFYN-------KNQDYADIRNGLVAAIAIDVEEPMFESQTK 337

Query: 385 TKLVSLDA-------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           TKL S +         + V + ++   D++L +NP+    +L+ + +  +ER       +
Sbjct: 338 TKLGSNNMWPDGPTVNKYVGDFIKTEVDNFLHKNPLVTEVMLQKIQDSEKERKAIAGVTK 397

Query: 438 VNRKTAIRKLRLPGKLADCSQN--------IAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
           + R+ A +      KL DC  +            + +FI EGDSA GS  ++R+ + QAV
Sbjct: 398 LARERAKKANLHNRKLRDCRFHLSDGKGKEQETDSCIFITEGDSASGSITKSRDVNTQAV 457

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549
             LRGK LN      + +  N++   L  AL          E LRY KVI+ TDADVDG 
Sbjct: 458 FSLRGKPLNSYGLTKKVVYENEEFNLLQAALNIE----DGIEGLRYNKVIVATDADVDGM 513

Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK 609
           HI  L++TFF Q   DLI++ H++++  PLFR+    K+ Y + E+ + K +EE   +  
Sbjct: 514 HIRLLIITFFLQFFPDLIKKGHVYILQTPLFRVRNKKKTNYCYTEDERIKAIEELGPN-- 571

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669
              EI+RFKGLGE+   + K          L +V + K        ++ +   MG    E
Sbjct: 572 --PEITRFKGLGEISPDEFKHFIG--KDMRLEQVSLRK----TDLVKELLEFYMGKNTME 623

Query: 670 RFKFIQERASFIDDVGT 686
           R  FI +     +D+ +
Sbjct: 624 RQNFIIDNLVIEEDLAS 640


>gi|47523094|ref|NP_999049.1| DNA topoisomerase 2-alpha [Sus scrofa]
 gi|6094498|sp|O46374|TOP2A_PIG RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
           topoisomerase II, alpha isozyme
 gi|2668414|dbj|BAA23778.1| topoisomersae II [Sus scrofa]
          Length = 1533

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 140/694 (20%), Positives = 269/694 (38%), Gaps = 69/694 (9%)

Query: 17  QGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE----- 71
           Q  +E ++ +    +  A    S    Y          LE + +RP  YIG  +      
Sbjct: 7   QPVNENMQVNKTKKNEEAKKRLSIERIYQKK-----TQLEHILLRPDTYIGSVESVTQQM 61

Query: 72  -----------------KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDN 112
                              L+ +F E++ NA D        + I V++D  N  +++ +N
Sbjct: 62  WVYDEDIGINYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNN 121

Query: 113 GRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVT 172
           G+GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V 
Sbjct: 122 GKGIPVVEH-KVEKMYVPALIFGQLLTSSNYDDEEKKVTGGRNGYGAKLCNIFSTKFTVE 180

Query: 173 V--ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLL 228
                   +F Q +   +  +   + +    +  T ITF PD   F  +       A ++
Sbjct: 181 TASREYKKMFKQTWMDNMGRAGEMELKPFNGEDYTCITFHPDLSKFKMQSLDKDIVALMV 240

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           +     A  +  VK   + +K   +              G ++Y+   L+++   +    
Sbjct: 241 RRAYDIAGSTKDVKVFLNGNKLPVK--------------GFRSYVDLYLKDKVDETGNPL 286

Query: 289 TGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
               E+        E  +   E+  +  S+ N+I T +GG H   +   +   +      
Sbjct: 287 KIIHEQVNH---RWEVCLTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVAKLVD-VVK 342

Query: 349 TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
            +NK  +++ +  +       ++  I  P F  QTK  +            L + F    
Sbjct: 343 KKNKGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQVKSFGSTCQLSEKFIKAA 402

Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFI 468
           +        +L WV  +++  ++  K+    +   I+ +       D     +    L +
Sbjct: 403 IG-CGIVESILNWVKFKAQ--VQLNKKCSAVKHNRIKGIPKLDDANDAGGRNSTECTLIL 459

Query: 469 VEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
            EGDSA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +G + +
Sbjct: 460 TEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYK 519

Query: 526 SQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581
             Y +ED    LRY K++IMTD D DG+HI  LL+ F +     L+  + L     P+ +
Sbjct: 520 KNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVK 579

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           +++  + +  +     ++       H   K ++  +KGLG   + + KE   D  +   +
Sbjct: 580 VSKNKQEMAFYSLPEFEEWKSSTPNH--KKWKVKYYKGLGTSTSKEAKEYFADMKRHR-I 636

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675
           + + +           + +K    + D+R +++ 
Sbjct: 637 QFKYS-GPEDDAAISLAFSK---KQIDDRKEWLT 666


>gi|218259448|ref|ZP_03475180.1| hypothetical protein PRABACTJOHN_00838 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225102|gb|EEC97752.1| hypothetical protein PRABACTJOHN_00838 [Parabacteroides johnsonii
           DSM 18315]
          Length = 621

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 192/660 (29%), Positives = 296/660 (44%), Gaps = 75/660 (11%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           Y+   I+ L+ +E +R RPGMYIG        +  ++ L  EV+DN++DE + GY   IE
Sbjct: 14  YNDDDIKTLDWMEHIRRRPGMYIGKLGDGSYADDGIYVLLKEVLDNSIDEYMMGYGKTIE 73

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++   G ++V D GRG+P+           +  + + ++ G K+D+  ++ S GL+GVG
Sbjct: 74  VTV-EEGTVSVRDYGRGVPLGK---------VVDVSSKMNTGAKYDSKAFKKSVGLNGVG 123

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           I  VNALS    +T  R       ++S+ +               GT   F PD +IF D
Sbjct: 124 IKAVNALSSYFLITSHRDGECKRVEYSKAVITEEAPIC-PTEEANGTLTYFIPDKEIFKD 182

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              +    +  + ++  +L+  +   ++  K             F+   GL   L   + 
Sbjct: 183 Y-QYKDEYIESLLKNYVFLNSGLTIIFNGKK-------------FHSRNGLVDLLNENMT 228

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
              L       G+          +E  I    +   E  S+ N   T +GGTH S  R A
Sbjct: 229 TEPLYPIVHLKGE---------DIEVVITHSNQYGEEYYSFVNGQHTTQGGTHLSAFREA 279

Query: 338 LTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR--- 394
           L R IK+Y          +    D+    V  +S+ + EP F  QTKTKL S D      
Sbjct: 280 LGRVIKEYYN-------KNFEYSDIRAGVVAAISIKVEEPVFESQTKTKLGSKDMGPDGP 332

Query: 395 ----TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
                + + ++   D+YL +N   +  LL  + E  +ER       ++ R+ A +     
Sbjct: 333 SVGKFIGDFIKKELDNYLHKNAETSDALLRKIQESEKERKAIAGVTKLARERAKKANLHN 392

Query: 451 GKLADCSQNIAH-------GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
            KL DC  ++          + +FI EGDSA GS  ++R+ + QAV  LRGK LN     
Sbjct: 393 KKLRDCRIHLNDTKGDNLEDSCIFITEGDSASGSITKSRDPNLQAVFSLRGKPLNSFGLT 452

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            + +  N++   L  AL          E LRY KVII TDADVDG HI  LL+TFF Q  
Sbjct: 453 KKIVYENEEFNLLQAALNIEDGL----EGLRYNKVIIATDADVDGMHIRLLLITFFLQFF 508

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
            DLI++ H++++  PLFR+    K+ Y + EE +   +    K+     EI+RFKGLGE+
Sbjct: 509 PDLIKRNHVYILQTPLFRVRNKQKTWYCYSEEERVNAIAAAGKNA----EITRFKGLGEI 564

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
              + K          L  V + K+       +D +   MG    ER  FI +     +D
Sbjct: 565 SPDEFKHFIG--KDIRLDPVTMKKE----DLVKDMLEFYMGKNTMERQNFIIDNLVVEED 618


>gi|224106109|ref|XP_002314046.1| predicted protein [Populus trichocarpa]
 gi|222850454|gb|EEE88001.1| predicted protein [Populus trichocarpa]
          Length = 1482

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 141/697 (20%), Positives = 264/697 (37%), Gaps = 72/697 (10%)

Query: 18  GSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGG--------- 68
            +  K               ++  + Y   S      LE + +RP  YIG          
Sbjct: 2   AAETKKIPLSTSDSLNMNQEKTIEETYQKKS-----QLEHILLRPDTYIGSIEKHAQILW 56

Query: 69  ------------TDEKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGR 114
                       T    L+ +F E++ NA D        + ++V +D  N  ++V +NG 
Sbjct: 57  VFENDKMVHRSVTYVPGLYKIFDEILVNAADNKQRDPKMDSLKVVIDVENNLVSVYNNGD 116

Query: 115 GIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA 174
           G+PV+ H K       E+I   L     +D++  + +GG +G G  + N  S E  +  A
Sbjct: 117 GVPVDIH-KEEGVYVPELIFGHLLTSSNYDDTMKKTTGGRNGYGAKLTNIFSTEFVIETA 175

Query: 175 RQNTIFSQK--FSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKA--GFDAARLLK 229
                   K  FS  +         K +  +  T++TF+PD   F          A + K
Sbjct: 176 DGKRKKKYKQVFSNNMGKRSEPIITKCKESENWTKVTFKPDLAKFSMTHLEEDVVALMKK 235

Query: 230 MTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFT 289
                A   G+          +  K               + Y+   L + +   SE   
Sbjct: 236 RVVDMAGCLGKTVKVELNGSRVPVKSF-------------QDYVNMYLNSAAESGSERPK 282

Query: 290 GKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
              +K G      E  ++  E   +  S+ N+I T +GGTH   +   +T  +     + 
Sbjct: 283 CFYDKVGE---RWEVCVSLTEGQFQQASFVNSIATIKGGTHVDYVTNQITNYVMN--AVN 337

Query: 350 QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
           +  +  +I + ++       ++  I  P F  QTK  L    +    +  L + F   + 
Sbjct: 338 KKHKNGNIKAHNVKNYLWVFVNCLIDNPAFDSQTKETLTLRQSSFGSKCELSEDFLKKVA 397

Query: 410 QNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           +     + +++ ++  ++ +  +  ++    KTA   +       +     +    L + 
Sbjct: 398 K-----SDIVDNLLSWAKFKENKELKKTDGTKTAKVNVPKLEDANEAGGRYSEKCTLILT 452

Query: 470 EGDS------AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523
           EGDS      AG +      R+   V PLRGK+LNV  A S++++ N++I  + + LG +
Sbjct: 453 EGDSAKALAIAGVAGLSQMERNFYGVFPLRGKLLNVREATSKQLKENKEIESIKKILGLQ 512

Query: 524 TRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK-HLFLISPPLFR 581
              QY     LRY  ++IMTD D DG+HI  LL+ F +     L++    L     P+ +
Sbjct: 513 HDKQYINVKSLRYGHLMIMTDQDHDGSHIKGLLINFIHSFWPSLLKVPSFLVEFITPIVK 572

Query: 582 IT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
            T +    +  +     +   E    +      I  +KGLG   + + K+   + +K   
Sbjct: 573 ATHRNGTVLSFYSMPEYESWKESLSGNA-SGWSIKYYKGLGTSTSKEGKDYFKNLHKH-- 629

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
            +  +  D       + + +K    K + R  ++++ 
Sbjct: 630 KKDFLWMDELDGDAIELAFSK---KKIEARKNWLRQH 663


>gi|182411930|ref|YP_001816996.1| DNA topoisomerase IV subunit B [Opitutus terrae PB90-1]
 gi|177839144|gb|ACB73396.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Opitutus terrae PB90-1]
          Length = 629

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 202/668 (30%), Positives = 291/668 (43%), Gaps = 73/668 (10%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----EKALHHLFSEVIDNAMDEVI 90
           AN   +  Y  +SI+ L   E +R+RPGMYIG        E  ++ L  E IDN++DE  
Sbjct: 14  ANAIMAQAYTEASIKTLSSTEHIRLRPGMYIGRLGNGAHAEDGIYVLLKESIDNSIDEFT 73

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
            GY   IE+ L  +  + V D GRGIP+           LE + + ++ G K+D+ T++ 
Sbjct: 74  MGYGRKIEIEL-QDRMVRVRDYGRGIPLGK--------VLECV-SIINTGAKYDSETFKK 123

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           + GL+GVG   VNALS        R       +F++G      +   K   + GT I F 
Sbjct: 124 AVGLNGVGQKAVNALSFSYRAQAFRDGQTKLVEFAQGKLRKDHKIA-KTTERNGTLIEFT 182

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PD  +FG    F    +  M  + A+L+  +   ++                F    GLK
Sbjct: 183 PDEALFGKDFKFRPEFIEDMLWNYAFLNRGLTLTFNGK-------------AFRSENGLK 229

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
             LQ  L    L       G+          +E A         E  S+ N   T  GGT
Sbjct: 230 DLLQKNLSGEPLYPIIHLEGE---------DMEVAFTHGAHYGEEYYSFVNGQHTTMGGT 280

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           H +  R AL   ++ + +           + D+  S    +SV + EP F  QTKTKL S
Sbjct: 281 HLAAFREALVETVRNFFKR-------DYDAADVRQSIDAAVSVRVMEPVFESQTKTKLGS 333

Query: 390 LDA-------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
            D        +  +   ++   D YL +N   A  L   + E   ER      R + R+ 
Sbjct: 334 TDIAPGGPSIRDFIGKFVQQSLDGYLHKNRETADALRNKIEESERERKELAGIRSLARER 393

Query: 443 AIRKLRLPGKLADCSQNIAHGTE------LFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
           A +      KL DC  ++    E      LFIVEGDSA GS    R+   QAV  L+GK 
Sbjct: 394 AKKASLHNRKLRDCRLHLGDRNERAEESTLFIVEGDSAAGSLTATRDVQTQAVFALKGKP 453

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556
           LN      + I  N++   L  AL          + LRY +V+I TDADVDG HI  LL+
Sbjct: 454 LNTFGLSKKVIYENEEFHLLQSALNVE----DSMDGLRYNRVVIATDADVDGMHIRLLLI 509

Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616
           +FF Q   DLI   HLF++  PLFR+    +++Y + EE KQ  +++         EI+R
Sbjct: 510 SFFLQFFPDLIRNGHLFILETPLFRVRNKKETIYCYSEEEKQAAMKKLGASH----EITR 565

Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           FKGLGE+ A + K+         L  V +      L D+ + +   MG    ER  FI +
Sbjct: 566 FKGLGEISAGEFKDFIG--EAMRLEPVTLAH----LNDSNELLGFFMGKNTPERQDFIID 619

Query: 677 RASFIDDV 684
                 D+
Sbjct: 620 NLKVEKDL 627


>gi|110638017|ref|YP_678224.1| DNA topoisomerase IV subunit B [Cytophaga hutchinsonii ATCC 33406]
 gi|110280698|gb|ABG58884.1| DNA topoisomerase IV, subunit B [Cytophaga hutchinsonii ATCC 33406]
          Length = 628

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 193/660 (29%), Positives = 301/660 (45%), Gaps = 74/660 (11%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           Y   SIR L+  E +R+RPGMYIG        +  ++ L  E+IDN++DE + G    I+
Sbjct: 8   YTEDSIRSLDWKEHIRLRPGMYIGKLGDGSAQDDGIYVLVKEIIDNSIDEHMMGNGKQID 67

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           + +  +  + V D GRGIP+           +   ++ ++ GGK+D+  ++ S GL+GVG
Sbjct: 68  IVI-TDKKVEVRDYGRGIPLGK---------VIDCVSKINTGGKYDSGAFQKSVGLNGVG 117

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
              VNALS    V   R       +F +G  +   ++      K GT ITF PD  IF +
Sbjct: 118 TKAVNALSAYFKVQSIRDGKTKVAEFEKGELVKDHKE-TSTTEKNGTMITFTPDNTIFKN 176

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L +   + A+L+  +   ++  K             +Y   GL   L+ K +
Sbjct: 177 FY-FIPEFLEEQLWNYAFLNAGLTINYNGKK-------------YYSENGLLDLLKRKAD 222

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
             S+    I              +E  +   E+   E  S+ N   T +GGTH +  R A
Sbjct: 223 VESIRYPFIHL--------KGNDIEICLTHGEQYGEEYYSFVNGQYTTQGGTHLAAFREA 274

Query: 338 LTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR--- 394
           + + +++Y +           + D+  S +G +++ ++EP F  QTKTKL S +      
Sbjct: 275 VVKTVREYYK-------KDFDASDVRSSIIGAIAIRVQEPVFESQTKTKLGSQNVAHEGP 327

Query: 395 ----TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
                V + ++   D+YL QN   A  LL+ +++   ER      +++    A +     
Sbjct: 328 TVRNFVNDFVKRELDNYLHQNSTAADALLKRILQSERERKDIAGIKKLANDRAKKANLHN 387

Query: 451 GKLADCSQN-------IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
            KL DC  +         + + LFI EGDSA GS  ++R    QAV  LRGK LN     
Sbjct: 388 KKLRDCRFHLDDEKSDKRYESTLFITEGDSASGSITKSRKVETQAVFSLRGKPLNCFGLT 447

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            + +  N++   L  AL          E LRY+ V+I TDADVDG HI  LL+TFF Q  
Sbjct: 448 KKIVYENEEFNLLQHALNIEDGL----EGLRYKNVVIATDADVDGMHIRLLLMTFFLQFF 503

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
            DL+   HLF++  PLFR+    +++Y + EE KQK + +       K EI+RFKGLGE+
Sbjct: 504 PDLVRNGHLFILDTPLFRVRNKKETIYCYSEEEKQKAMAKLG----VKPEITRFKGLGEI 559

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
              +            L  + + K++         ++  MG    ER +FI E      D
Sbjct: 560 SPDEFGHFIG--ENIRLDPIILTKEIT----IPKLLSYYMGKNTPERQQFIIENLKLEKD 613


>gi|225678456|gb|EEH16740.1| DNA topoisomerase [Paracoccidioides brasiliensis Pb03]
          Length = 1788

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 153/729 (20%), Positives = 286/729 (39%), Gaps = 76/729 (10%)

Query: 4   DSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYD----------ASSIRILE 53
           D   + S  PP +  S++  K +G    +    +   ++++           +   + L 
Sbjct: 87  DDASVLSATPPNAAASNKGKKAAGSKKSAANPLSNVENESFGTDGVAAPTDSSERYQKLT 146

Query: 54  GLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDNAMDEVI 90
            LE +  RP  YIG  +                          L+ +F E++ NA D   
Sbjct: 147 QLEHIIKRPDTYIGSIERSTSQMWVYNSESEAMEYREVSYVPGLYKIFDEILVNAADNKH 206

Query: 91  AG-YANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148
                + I V+L+   G ++V +NGRGIP+E H K       E+I   L     +++   
Sbjct: 207 NDKNMDEIRVTLNRESGEISVWNNGRGIPIEIHAK-EKLYIPELIFGHLLTSSNYNDMQQ 265

Query: 149 EISGGLHGVGISVVNALSDELHVTVA--RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +++GG +G G  + N  S E  +  A  RQN  + Q ++  +      K    + +  T+
Sbjct: 266 KVTGGRNGYGAKLCNIFSTEFTIETADSRQNKKYKQTWTNNMSKMGKAKITDCKGQDYTK 325

Query: 207 ITFRPD-PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           +TF PD  K   +    D   L+K       ++G  K     +          +    Y 
Sbjct: 326 VTFTPDFKKFGMEGVDDDFEALVKRR--VYDMAGTCKVIVKLNGSRIPVRNFKQYMAMYT 383

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTD 325
               K   +   ++++ I  +                E   A  + + +  S+ N+I T 
Sbjct: 384 NAIKKERGEEAAKDKTEILLD----------NPDPRWEVGFAVSDGSFQQVSFVNSIATT 433

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
            GG+H + +   +   + +     +NK   S+    +       ++  I  P F  QTK 
Sbjct: 434 SGGSHVNAVADQICNRLAE-TVKKRNKTGASLKPAQIRNHIFVFVNSQIVNPAFTSQTKE 492

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIR 445
           +L +  +Q   +  L + F   +++  +        ++  +E++  +  ++    + +  
Sbjct: 493 QLTTKPSQFGSKIVLSEEFLKKVIKTQVMEN-----IMHFAEKKADQILKKSDGNRRSRM 547

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASA 502
                           H   L + EGDSA G A   R         V PLRGK+LNV  A
Sbjct: 548 NNPKLTDANKAGTKEGHHCTLILTEGDSAKGLAMAGRAIVGPDLFGVFPLRGKMLNVRDA 607

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
             ++I  N +I ++   LG + + +Y +   LRY  ++IMTD D DG+HI  LL+ F   
Sbjct: 608 SVDQISKNAEIQNIKNFLGLQHKKEYTDTKGLRYGHLMIMTDQDHDGSHIKGLLINFLQV 667

Query: 562 EMYDLIEQK-HLFLISPPLFRITQGT-----KSVYAHDEEHKQKILEEFKKHGKGKIEIS 615
               L++    L     P+ ++ +G       S      +  +   +E   H +   E  
Sbjct: 668 AFPSLLKIPQFLIEFITPIVKVWKGDPKNPIISKSFFTMQEYETW-KEIHGHDRR-WEKK 725

Query: 616 RFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675
            +KGLG       +    D +K  L +  + +D  + +    + +K    KADER ++++
Sbjct: 726 YYKGLGTSTTEDAEIYFQDLDKH-LKQFHVMQDNEA-QLIDLAFSK---KKADERKEWLR 780

Query: 676 E--RASFID 682
           +    +F+D
Sbjct: 781 QFKPGTFLD 789


>gi|296202778|ref|XP_002748606.1| PREDICTED: DNA topoisomerase 2-alpha [Callithrix jacchus]
          Length = 1531

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 142/695 (20%), Positives = 269/695 (38%), Gaps = 69/695 (9%)

Query: 17  QGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD------ 70
           Q  +E ++ +    +  A    S    Y          LE + +RP  YIG  +      
Sbjct: 7   QPVNENMQVNKIKKNEDAKKRLSIERIYQKK-----TQLEHILLRPDTYIGSVELVTQQM 61

Query: 71  ----------------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDN 112
                              L+ +F E++ NA D        + I V++D  N  +++ +N
Sbjct: 62  WVYDEDIGINYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTVDPENNLISIWNN 121

Query: 113 GRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVT 172
           G+GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V 
Sbjct: 122 GKGIPVVEH-KVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 180

Query: 173 --VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLL 228
                   +F Q +   +  +   + +    +  T ITF+PD   F  K       A ++
Sbjct: 181 TACREYKKMFKQTWMDNMGRAGEMELKPFSGEDYTCITFQPDLSKFKMKSLDKDIVALMV 240

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           +     A  +  VK   + +K   +              G ++Y+   L+++   +    
Sbjct: 241 RRAYDIAGSTKDVKVFLNGNKLPVK--------------GFRSYVDMYLKDKLDETGNPL 286

Query: 289 TGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
               E+        E  +   E+  +  S+ N+I T +GG H   +   +   +      
Sbjct: 287 KVIHEQVNH---RWEVCLTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLVD-VVK 342

Query: 349 TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
            +NK  +++ +  +       ++  I  P F  QTK  +            L + F    
Sbjct: 343 KKNKGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQPKSFGSTCHLSEKFIKAA 402

Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFI 468
           +        +L WV  +++  ++  K+    +   I+ +       D     +    L +
Sbjct: 403 IG-CGIVESILNWVKFKAQ--VQLNKKCSAVKHNRIKGIPKLDDANDAGGRNSTECTLIL 459

Query: 469 VEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
            EGDSA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +G + +
Sbjct: 460 TEGDSAKTLAVSGLGVVGRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYK 519

Query: 526 SQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581
             Y +ED    LRY K++IMTD D DG+HI  LL+ F +     L+  + L     P+ +
Sbjct: 520 KNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVK 579

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I++  + +  +     ++       H   K ++  +KGLG   + + KE   D  +   +
Sbjct: 580 ISKNKQEMAFYSLPEFEEWKSSTPNH--KKWKVKYYKGLGTSTSKEAKEYFADMKRHR-I 636

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           + +             + +K    + D+R +++  
Sbjct: 637 QFKY-CGPEDDAAISLAFSK---KQIDDRKEWLTN 667


>gi|302844478|ref|XP_002953779.1| hypothetical protein VOLCADRAFT_94598 [Volvox carteri f.
           nagariensis]
 gi|300260887|gb|EFJ45103.1| hypothetical protein VOLCADRAFT_94598 [Volvox carteri f.
           nagariensis]
          Length = 1126

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 134/674 (19%), Positives = 253/674 (37%), Gaps = 57/674 (8%)

Query: 50  RILEGLEPVRMRPGMYIGGTD---------------------EKALHHLFSEVIDNAMDE 88
           +    LE + +RP  YIG T+                        L+ +F E++ NA D 
Sbjct: 3   QKKTQLEHIILRPDTYIGSTERQPNTIWVHNGQKMELKTVNYPPGLYKIFDEILVNAADN 62

Query: 89  VIAGY-ANLIEVSLDG-NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146
            +     + I+V +D  N  + V ++GRGIPVE H K       E+I   L     +++S
Sbjct: 63  KVRDPTMDTIKVDVDPANNSIRVWNSGRGIPVEVH-KEEGVYVPELIFGHLLTSSNYNDS 121

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK--FSRGIPLSPLEKKEKVR-NKR 203
             +I+GG +G G  + N  S E  V     +     K  F+  +      K    + +  
Sbjct: 122 EKKITGGRNGYGAKLANIFSTEFTVETCDGSRQRRYKQTFTNNMQQKGTPKITDCKASDN 181

Query: 204 GTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
            T ITF+PD       +      + L +     A + G+    +   + ++ K      +
Sbjct: 182 WTCITFKPDLAKFGMSELDEDIVSVLRRRVFDMAGVLGKGVKVFYNGERLSIKSFQEYVD 241

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
            +          +T        +      +           E  I+  + + +  S+ N 
Sbjct: 242 MYL----GPKVKRTWFRGVPHDNGIPRFCERLND-----RWEICISLTDGSFQQVSFVNA 292

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
           I T +GGTH   +   + +   +     +  +  +I    +       L+ ++  P F  
Sbjct: 293 ISTQKGGTHVEYIVNQIVKHCIE-KLSKKTAKTTAIKPAMVRNHLWIFLNCYVENPAFDS 351

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT----KLLEWVIERSEERLRRRKQRE 437
           Q     + L  + T+            +  P+        L + +I+ +E + ++  ++ 
Sbjct: 352 QASPFKIVLLTKETLTLRSTSFGSKCELPIPLLDKVLKAGLSDSIIKYAEFKSQKDLKKG 411

Query: 438 VNRKTAIRKLRLPGKLA-DCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLR 493
              K +          A D     +    L + EGDSA   A        R++  V PLR
Sbjct: 412 DGVKRSRLVGMAKLDDANDAGGPRSTDCTLILTEGDSAKSLAVSGLGVVGRNHYGVFPLR 471

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIA 552
           GK+LNV  A + +I  NQ+I ++ Q +G +    Y     LRY  ++IMTD D DG+HI 
Sbjct: 472 GKLLNVREASAVQIAANQEIQNIKQIMGLQHGRVYDSTSSLRYGHLMIMTDQDHDGSHIK 531

Query: 553 SLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK 611
            L++ F +     L++    +     P+ +  +G ++   +     +   E    +    
Sbjct: 532 GLIMNFMHSFFPSLLKIPGFMLEFITPIVKARRGRETKVFYTMPEYEAWKESL-DNNTSG 590

Query: 612 IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERF 671
            +I  +KGLG     + +E     N      V            + + +K    + D+R 
Sbjct: 591 WDIKYYKGLGTSTKEEAQEYFSRLNLHRKEFV--WTGDEDGDAIELAFSK---KRVDDRK 645

Query: 672 KFIQE--RASFIDD 683
           +++      +++D 
Sbjct: 646 EWLSNFVPGTYLDQ 659


>gi|302340477|ref|YP_003805683.1| DNA topoisomerase type IIsubunit alpha B region 2 domain protein
           [Spirochaeta smaragdinae DSM 11293]
 gi|301637662|gb|ADK83089.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Spirochaeta smaragdinae DSM 11293]
          Length = 597

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 184/649 (28%), Positives = 300/649 (46%), Gaps = 66/649 (10%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGY 93
             S +YD S I+ L  LE +R+R GMYIG        +  ++ L  E+IDN++DE I G 
Sbjct: 3   KKSTSYDESKIKTLSSLEHIRLRTGMYIGRLGDGSNFDDGIYILLKEIIDNSIDEYIMGS 62

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
            NLI+V L  +  + V D GRGIP+           +E + + ++ G K+++  ++ S G
Sbjct: 63  GNLIKVQL-ADNVVRVRDFGRGIPLGK--------VIECV-SIINTGAKYNDEVFQFSVG 112

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           L+GVG   VNALS    V   R    F   F RG  L   +K +  + K GT   F  DP
Sbjct: 113 LNGVGTKAVNALSKRFRVVSFRNGAYFEAIFERGE-LKSQKKGKAPKEKNGTYTEFEADP 171

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IFGD   F+   + +   + A L+  +   ++  +             F    GL   L
Sbjct: 172 DIFGDYL-FNQEFVEQRMWNYACLNAGLTLEFNKKR-------------FKSEKGLLDLL 217

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
            +++  ++L   EI   + EK       +E+A    E       S+ N   T +GGTH+S
Sbjct: 218 ASEIGEKTLY--EIGYYRGEK-------LEFAFTHTETYGETYFSFVNGQYTSDGGTHQS 268

Query: 333 GLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
             R  L +G+ ++ +        +    D+     G ++V +  P F  QTK KL + + 
Sbjct: 269 AFREGLLKGVNEFYK-------KNYSGVDVREGIAGAIAVKLMNPVFESQTKNKLGNTEV 321

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
           +  + N ++D    +L ++   A KL + +      R      ++  R+ A +      K
Sbjct: 322 RGWIVNEVKDAVADFLHKDQEAAKKLEDKIRNNERLRKELNSVKKEAREAAKKIALKIPK 381

Query: 453 LADCSQN----IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           L DC  +        T +F+ EG SA G+   +R+  +QA+  LRGK  N        + 
Sbjct: 382 LKDCKYHLGDKEGDETMIFLTEGASATGAMVSSRDVYHQAIFSLRGKPQNTWGKKKADLY 441

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            N+++ +++ ALG          +LRY K++I TDAD DG HI +LLLTFF     +L+ 
Sbjct: 442 KNEELYNMMMALGIENDV----AELRYAKIVIATDADHDGFHIRNLLLTFFLNYFEELVH 497

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           Q  +F++  P+FR+    ++ Y ++ + + + +     H     E++RFKGLGE+  S+ 
Sbjct: 498 QGRVFILETPIFRVRNKKETRYCYNLKERDEAMGSLSNH-----EVTRFKGLGEISPSEF 552

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
            +         L+ V I     SL+   D++   MG     R  FI E 
Sbjct: 553 GQFIG--EDMRLVNVSI----KSLQTIPDTLEFYMGKNTPHRRSFIMEN 595


>gi|18369814|dbj|BAB84102.1| DNA topoisomerase II [Aspergillus niger]
          Length = 1391

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 152/729 (20%), Positives = 281/729 (38%), Gaps = 85/729 (11%)

Query: 8   LFSTLPPQSQGSSEKLKKSGEI--------------PDSPAFANQSASDNYDASSIRILE 53
           + S  PP+    +    K G                       + +AS+ Y     + L 
Sbjct: 13  VLSHTPPKKAKKTAGPSKKGGAKPLADVENESFGKDDSVEPGKSNNASEKY-----QKLT 67

Query: 54  GLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDNAMDEVI 90
            LE +  RP  YIG  +                          L+ +F E++ NA D   
Sbjct: 68  QLEHIIKRPDTYIGSVERTTQQMWVYSSESEGMEYREVSYVPGLYKIFDEIVVNAADNKQ 127

Query: 91  AG-YANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148
                + I V++D   G ++V +NGRGIP+E H K       E+I   L     +D++  
Sbjct: 128 NDENMSEIRVTVDRESGVISVWNNGRGIPIEMHAK-EKIYVPELIFGHLLTSSNYDDTQQ 186

Query: 149 EISGGLHGVGISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +++GG +G G  + N  S E  +      Q   + Q ++  +      K  + + +   +
Sbjct: 187 KVTGGRNGFGAKLCNVFSTEFSIETQDSSQKKKYRQTWTENMTKIGKAKITEAKGEDYAK 246

Query: 207 ITFRPDP-KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           +TF+PD  K   D    D   L+K        + +V    +  +     +        Y 
Sbjct: 247 VTFKPDYAKFGMDGMDDDFEALVKRRVYDLAGTAKVNVKLNGTRIPIRGFKK------YM 300

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTD 325
               K   + + +       EI T             E   A  +   +  S+ N+I T 
Sbjct: 301 EMYTKAIRKERGDTGPAPKDEIITCS------PDPRWEVGFAVSDGAFQQVSFVNSIATT 354

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
            GGTH + +   +   + +     +NK   ++ +  +       ++  I  P F  QTK 
Sbjct: 355 SGGTHVNYIADRICNRLAE-QVKKKNKNGATLKTAQIRNHIFIFVNALIVNPAFTSQTKE 413

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIR 445
           +L +  +Q   +  L + F   +++     T +++ ++  ++++  +  ++    + +  
Sbjct: 414 QLTTKASQFGSKCVLDEDFYKKVLK-----TAVMDNILHFAQQKADQMLKKTDGGRRSRM 468

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASA 502
                           H   L + EGDSA G A   R         V PLRGK+LNV  A
Sbjct: 469 NNPKLTDANKAGTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDA 528

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
             ++I  NQ+I ++   LG + + +Y +   LRY  ++IMTD D DG+HI  LL+ F   
Sbjct: 529 SFDQISKNQEIQNIKNFLGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINFLQA 588

Query: 562 EMYDLIEQK-HLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615
           +   L++    L     P+ ++ +G     TK          +   EE +   +   +  
Sbjct: 589 QFPSLLKIPEFLIEFITPIVKVWKGDPKNPTKQRSFFTMPEYEAWAEEHQ--HERGWDHK 646

Query: 616 RFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675
            +KGLG       +    D ++       +    N  +  + + +K    KADER ++++
Sbjct: 647 YYKGLGTSTTEDAQVYFRDLDRHLKEFHTMQD--NEAELIELAFSK---KKADERKEWLR 701

Query: 676 E--RASFID 682
           +    +F+D
Sbjct: 702 QFKPGTFLD 710


>gi|239775116|gb|ACS15316.1| DNA gyrase subunit B [Kribbella sancticallisti]
          Length = 558

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 208/553 (37%), Positives = 309/553 (55%), Gaps = 10/553 (1%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIG T E+ LHHL +EV+DNA+DE +AGY + I V+L  +G + VVDNGRGIPV+   +
Sbjct: 1   MYIGSTGERGLHHLVTEVVDNAVDEALAGYCDKIVVTLLPDGAVRVVDNGRGIPVDIV-E 59

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
              K  + ++LT LHAGGKF    Y++SGGLHGVG+SVVNALSD L V V +    ++Q 
Sbjct: 60  SEGKPAVTVVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSDRLRVDVRKNGKAYTQS 119

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           F+ G+P + L +     +  GT ITF P P +F     F    L    +  A+L+  ++ 
Sbjct: 120 FTVGVPDADLAEVG-TSDANGTTITFWPSPGVFESTT-FSYETLSTRFREYAFLNKGLEL 177

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
               ++  + + G P ++ F +  GL  Y++     R  +  ++   +  + G +  ++E
Sbjct: 178 VIRDERTDSTEDGEPVEQSFKYDDGLVDYVKYLTGIRETVHRDVIAFEAAQ-GDNSLSLE 236

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISD 360
            A+ W       + ++ NTI T EGGTHE G R ALT  +  + E      K+   +  D
Sbjct: 237 VAMQWSGSFQESVHTFANTINTHEGGTHEEGFRAALTSLVNSFGEDQGMIKKKEDRLTGD 296

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D+      I+SV + EP+F GQTKTKL + + +  V+  + D    +  QNP E  +++ 
Sbjct: 297 DIREGLTAIISVKLGEPQFEGQTKTKLGNTEVKGFVQRVVNDRLGAWFEQNPQEGREIIR 356

Query: 421 WVIERSEERLRRRKQRE--VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
                +  R+  RK R+   NRK  +    LPGKL+DC        E++IVEGDSAGGSA
Sbjct: 357 KATAAASARIAARKARDLARNRKGLLGGGGLPGKLSDCQSTNPEECEVYIVEGDSAGGSA 416

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538
           K  R+   QA+LP+RGKILNV  A  +K+  N ++  ++ ALG      + EE LRY K+
Sbjct: 417 KGGRDPKFQAILPIRGKILNVEKARIDKVLQNNEVQAIISALGTGIHEDFDEEKLRYHKI 476

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVY-AHDEEHK 597
           +IM DADVDG HI +LLLT  ++ M  LIE+  ++   PPL++I     +   A+ E  K
Sbjct: 477 VIMADADVDGQHIRTLLLTLLFRFMRPLIERGRVYAAQPPLYKIRWSNSAHELAYTEREK 536

Query: 598 QKILEEFKKHGKG 610
             ++    + GK 
Sbjct: 537 DGLMAAGFEAGKK 549


>gi|238507856|ref|XP_002385129.1| DNA topoisomerase II [Aspergillus flavus NRRL3357]
 gi|220688648|gb|EED45000.1| DNA topoisomerase II [Aspergillus flavus NRRL3357]
          Length = 1717

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 161/721 (22%), Positives = 282/721 (39%), Gaps = 68/721 (9%)

Query: 3   DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDAS-SIRILEGLEPVRMR 61
           DD   + S  PP+    +   KK G  P +    N+S ++  DA      L  LE +  R
Sbjct: 75  DDEDSVLSHTPPKKAKKAPASKKGGSKPLADV-ENESFTNEADAGPKDSNLTQLEHIIKR 133

Query: 62  PGMYIGGTD-----------------------EKALHHLFSEVIDNAMDEVIAG-YANLI 97
           P  YIG  +                          L+ +F E++ NA D        + I
Sbjct: 134 PDTYIGSIERTSQQMWVYSTESDGMEFREVSYVPGLYKIFDEIVVNAADNKQNDANMDEI 193

Query: 98  EVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
            V++    G ++V +NGRGIP+E H K       E+I   L     +D++  +++GG +G
Sbjct: 194 RVTISRETGEISVWNNGRGIPIEMHAK-EKIYVPELIFGHLLTSSNYDDTQQKVTGGRNG 252

Query: 157 VGISVVNALSDEL--HVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP- 213
            G  + N  S E       +RQ   + Q ++  +      K    +    T++TF+PD  
Sbjct: 253 FGAKLCNVFSTEFSIETQDSRQKKKYKQTWTSNMTKMGKAKITDAKGDDYTKVTFKPDYA 312

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K   D    D   L+K        + +V    +  +     +        Y     K   
Sbjct: 313 KFGMDGMDNDFEALVKRRVYDLAGTAKVAVKLNGSRVPVRNFKK------YMEMYTKAIR 366

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESG 333
           + + ++      EI T             E   A  + + +  S+ N+I T  GGTH + 
Sbjct: 367 RERGDDGPAAKDEIITCS------PDPRWEVGFAVSDGSFQQVSFVNSIATTSGGTHVNY 420

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
           +   +   +       +NK   ++    +       ++  I  P F  QTK +L +  +Q
Sbjct: 421 IADQICSKLAD-QVKKKNKNGATLKPAQIRNHIFIFVNAQIVNPAFTSQTKEQLTTKSSQ 479

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
              +  L + F   +++     T ++  ++  ++++  +  ++    + A          
Sbjct: 480 FGSKCVLEEDFYKKILK-----TDVMSNILHFAQQKADQMLKKTDGGRRARMNNPKLTDA 534

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNN 510
                   H   L + EGDSA G A   R         V PLRGK+LNV  A  E+I  N
Sbjct: 535 NKAGTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDATFEQISKN 594

Query: 511 QQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
            +I ++   LG + + +Y +   LRY  ++IMTD D DG+HI  LL+ F   +   L+  
Sbjct: 595 AEIQNIKNFLGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINFLQAQFPSLLRI 654

Query: 570 K-HLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
              L     P+ ++ +G     TK          +   EE K   +   E   +KGLG  
Sbjct: 655 PEFLIEFITPIIKVWKGDPKNPTKQRSFFTMPEYEAWKEEHK--HERGWEHKYYKGLGTS 712

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE--RASFI 681
                +    D ++       +    N +   + + +K    KADER +++++    +F+
Sbjct: 713 TTEDAQVYFRDLDRHLKEFHTMQD--NEVGLIELAFSK---KKADERKEWLRQFKPGTFL 767

Query: 682 D 682
           D
Sbjct: 768 D 768


>gi|255533358|ref|YP_003093730.1| DNA topoisomerase IV subunit B [Pedobacter heparinus DSM 2366]
 gi|255346342|gb|ACU05668.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Pedobacter heparinus DSM 2366]
          Length = 633

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 175/663 (26%), Positives = 303/663 (45%), Gaps = 74/663 (11%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYA 94
           A  NY+  SIR L+  E +R+RPGMYIG        +  ++ L  E++DN++DE + G  
Sbjct: 2   AEPNYNEDSIRSLDWKEHIRLRPGMYIGKLGDGSAQDDGIYVLLKEIVDNSIDEFVMGSG 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             IE+++  +  + V D GRGIP+           +   ++ ++ GGK+D+  ++ S GL
Sbjct: 62  RTIEITV-SDQKVNVRDYGRGIPLGK---------VIDCVSKINTGGKYDSKAFQKSVGL 111

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           +GVG   VNALS    V   R N     +FS+G  +           + GT ITF PD  
Sbjct: 112 NGVGTKAVNALSTNFVVQSYRDNKTKKVEFSKGEIVLDNAII-DTTQRNGTAITFYPDET 170

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   +    +  M  +  +L+  +   ++  K             ++   GL   L 
Sbjct: 171 IFRNYH-YIPDFVESMIWNYVFLNAGLTINFNGQK-------------YFSERGLYDLLH 216

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333
              +  S+    I    ++        +E A+   ++  E    + N   T +GGTH++ 
Sbjct: 217 KHADVESVRYPIIHLVGSD--------IEIAMTHGQQYGEDYHSFVNGQHTTQGGTHQAA 268

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA- 392
            R A+ + I+++ +           + D+  S +  +SV ++EP F  QTKTKL S +  
Sbjct: 269 FREAVVKTIREFYK-------KEYDASDIRSSIIAAISVRVQEPVFESQTKTKLGSQNMG 321

Query: 393 ------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
                 +  + + ++   D YL ++   A  LL+ +++   ER      +++    A + 
Sbjct: 322 PDGPSVRTFINDFVKKELDDYLHKHSDVADALLKRILQSERERKDIAGIKKLANDRAKKA 381

Query: 447 LRLPGKLADC------SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
                KL DC      + +  + T LFI EGDSA GS  ++R+   QAV  L+GK LN  
Sbjct: 382 SLHNKKLRDCKIHFNSTHDKRYETTLFITEGDSASGSITKSRDVDCQAVFSLKGKPLNCY 441

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
               + +  N++   L  AL          + L Y  ++I TDADVDG HI  L++TFF 
Sbjct: 442 ELTKKVVYENEEFNLLQHALNIEDGL----DGLHYNNIVIATDADVDGMHIRLLMMTFFL 497

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           Q   DL+   H++++  PLFR+    +++Y + ++ ++K +E+       K EI+RFKGL
Sbjct: 498 QFFPDLVRAGHVYILQTPLFRVRNKKETIYCYSDDERKKAIEKLGN----KPEITRFKGL 553

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GE+   +               + ++  +   +  ++ +   MG    +R + I      
Sbjct: 554 GEISPDEFGLFIG-------KDIRLDPVILKDQTIKNLLEYYMGKNTPDRQQHIIRNLRI 606

Query: 681 IDD 683
             D
Sbjct: 607 EKD 609


>gi|327309598|ref|XP_003239490.1| DNA topoisomerase II [Trichophyton rubrum CBS 118892]
 gi|326459746|gb|EGD85199.1| DNA topoisomerase II [Trichophyton rubrum CBS 118892]
          Length = 1674

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 141/717 (19%), Positives = 272/717 (37%), Gaps = 69/717 (9%)

Query: 11  TLPPQSQGSSEKLKKSGEIP-----DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMY 65
           + PP +    +   K          ++ +F  ++      +   + +  LE +  RP  Y
Sbjct: 87  STPPNASKKQKAAPKKAASKPLANVENGSFTTETVEGGGSSEKYQKITQLEHILKRPDTY 146

Query: 66  IGGTD-----------------------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSL 101
           IG  +                          L+ +F E++ NA D        + I V+L
Sbjct: 147 IGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAADNKQNDPNMSEIRVTL 206

Query: 102 DGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           D   G ++V +NGRGIPVE H K       E+I   L     +++   +++GG +G G  
Sbjct: 207 DKEAGEISVWNNGRGIPVEIHKK-EQIYIPELIFGHLLTSSNYNDMQEKVTGGRNGYGAK 265

Query: 161 VVNALSDELHVTVARQNTIFSQK--FSRGIPLSPLEKKEKVRNKRGTRITFRPDP-KIFG 217
           + N  S E  V  A        K  ++  +      K  + +    T++TF+PD  K   
Sbjct: 266 LCNIFSKEFTVETADSKQKKKFKLTWTNNMSTMGKAKITECKGDDYTKVTFKPDFAKFGM 325

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           D    D   L+K        +       +  +   + +    +         +    T  
Sbjct: 326 DGMDDDFEALVKRRVYDMAGTCGTAVKLNGTRIPIKSFKKYMEMYTKAIKAERGEDPTSA 385

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337
            +++ I +E          +     E      + + +  S+ N+I T  GGTH + +   
Sbjct: 386 SDKNDIITE----------SPDRRWEIGFTVSDGSFQQVSFVNSIATTSGGTHVNYISDQ 435

Query: 338 LTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           +   +   A   +NK   ++ +  +       ++  I  P F  QTK +L +  +Q   +
Sbjct: 436 ICNKLAD-ALKKKNKTGATLKATQIKNHIFLFVNSQIVNPAFTSQTKEQLTTRPSQFGSK 494

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             + D F   +++  +        ++  +E++  +  ++    + +              
Sbjct: 495 CVVSDDFLKKVMKTRVMDD-----ILHFAEKKADQILKKTDGNRRSRMNNPKLTDANKAG 549

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
               H   L + EGDSA G A   R         V PLRGK+LNV  A  ++I  N +I 
Sbjct: 550 TKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQISKNAEIQ 609

Query: 515 DLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ-KHL 572
           ++   +G + + +Y +   LRY  ++IMTD D DG+HI  LL+ +       L++    L
Sbjct: 610 NIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPTLLKIPGFL 669

Query: 573 FLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
                P+ ++ +G     T +         ++  E        K +   +KGLG      
Sbjct: 670 IEFITPIVKVWKGDPKNPTHTKSFFTLPEYEEWKEAHA--HDKKWQKKYYKGLGTSSTED 727

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE--RASFID 682
            +    D ++       +       +  + + +K    KADER +++++    +++D
Sbjct: 728 AQIYFQDLDRHLKQFHTLQD--KEAELIELAFSK---KKADERKEWLRQFKPGTYLD 779


>gi|255076711|ref|XP_002502027.1| predicted protein [Micromonas sp. RCC299]
 gi|226517292|gb|ACO63285.1| predicted protein [Micromonas sp. RCC299]
          Length = 1459

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 153/701 (21%), Positives = 256/701 (36%), Gaps = 74/701 (10%)

Query: 20  SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD--------- 70
            EK   + +   S +   ++  D Y          LE + +RP  Y+G  +         
Sbjct: 34  GEKDVNAAKPASSSSSDGKAIEDIYQKK-----TQLEHILLRPDTYVGSCEKTEEKAWVY 88

Query: 71  --------------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGR 114
                            L+ +F E++ NA D  +       + V +D   G + V ++G 
Sbjct: 89  CKDTNKLVQRQMSFVPGLYKIFDEILVNATDNKVRDPSMVTLRVDIDQEAGCIRVYNDGN 148

Query: 115 GIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA 174
           GIPVE H K       E+I   L     ++++  +++GG +G G  + N  S E  V   
Sbjct: 149 GIPVEMH-KEEGVYVPELIFGHLLTSSNYNDNEKKVTGGRNGYGAKLANIFSTEFVVETC 207

Query: 175 RQNTIFSQK--FSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDK--AGFDAARLLK 229
             +     +  F   +         K +     T ITF+PD   F          A + K
Sbjct: 208 DGSRERRYRQVFKNNMGEKCEPVVTKCKPTDNWTCITFKPDLAKFNMTELEDDTVALMCK 267

Query: 230 MTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFT 289
                A   G+    +   + +  K             G   Y+   LE R         
Sbjct: 268 RVYDAAGNIGKNTKVFLNGERLKVK-------------GFSDYVDLYLEGRENAP----- 309

Query: 290 GKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            K  +K   R  V   I+    N +  S+ N I T +GGTH + +   +           
Sbjct: 310 -KVYEKVNDRWEVCVTIS-DSGNFQQVSFVNGICTMKGGTHVNQVADEVAGK-LLEKIKK 366

Query: 350 QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
           + K   ++ +  +       ++  I  P F  QTK  L +  +                +
Sbjct: 367 KEKSCKNLKAAHVKNHLWVFVNALIENPAFDSQTKETLNTRASNFG-SKYEASDKVIKQM 425

Query: 410 QNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
            N     ++L W   +  + +++   ++  R T I KL       D     +    L + 
Sbjct: 426 MNSGIVEQILSWASFKQSKEMKKSDGKKATRLTGIPKLDDAN---DAGGRNSEHCTLILT 482

Query: 470 EGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS 526
           EGDSA   A    +   R    V PLRGK+LNV  A  ++I NN +I  + Q LG R  +
Sbjct: 483 EGDSAKALAVSGLSVVGRDRYGVFPLRGKLLNVRDASHDQIMNNAEINHIKQILGLRHGT 542

Query: 527 QYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQ 584
            Y     LRY  ++IMTD D DG+HI  LL+ F +     L++    L     P+ + T+
Sbjct: 543 TYESAKSLRYGHIMIMTDQDHDGSHIKGLLINFLHAHFPSLLKIPGFLVEFITPIIKATK 602

Query: 585 GTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRTLLRV 643
           G +S   +         E  ++ G G    I  +KGLG   A + KE     +       
Sbjct: 603 GKQSKVFYTLPEYDNWKEHAEETGTGRGWNIKYYKGLGTSTAKEAKEYFAALDHHKKTFA 662

Query: 644 EINKDLNSLKDTQDSINKLMGTKADERFKFI--QERASFID 682
                         + +K    + ++R  ++   E  +++D
Sbjct: 663 WTTDG--DGNLIDMAFSK---KRVEDRKAWLNAYEPGTYLD 698


>gi|154795729|gb|ABS86852.1| gyrase B [Mycobacterium avium subsp. paratuberculosis]
          Length = 541

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 193/549 (35%), Positives = 281/549 (51%), Gaps = 39/549 (7%)

Query: 56  EPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRG 115
           E VR RPGMYIG T E+ LHHL  EV+DN++DE +AGYA+ ++V +  +G + V DNGRG
Sbjct: 1   EAVRKRPGMYIGSTGERGLHHLIWEVVDNSVDEAMAGYADRVDVRILDDGSVEVADNGRG 60

Query: 116 IPVENHPKFPNKSTLEIILTTLHAGGKF--DNSTYEISGGLHGVGISVVNALSDELHVTV 173
           IPV  H       T+++++T LHAGGKF  +NS Y +SGGLHGVG+SVVNALS  L V +
Sbjct: 61  IPVAIH--ATGAPTVDVVMTQLHAGGKFGGENSGYNVSGGLHGVGVSVVNALSTRLEVNI 118

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
           AR    +SQ +   +P +   K+ +V  + GT I F  DP IF     +D   + +  Q 
Sbjct: 119 ARDGYEWSQYYDHAVPGTL--KQGEVTKRTGTTIRFWADPDIFET-TEYDFETVARRLQE 175

Query: 234 KAYLSGRVKTCWSCDKEIAEK-------------------------YGIPEKEEFYFPGG 268
            A+L+  +    + ++   E+                             +   F++PGG
Sbjct: 176 MAFLNKGLTINLTDERVTNEEVVDEVVSDTADAPKSAQEKAAESAAPHKVKHRTFHYPGG 235

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           L  +++     ++ I   I     +  G     VE A+ W       + ++ NTI T EG
Sbjct: 236 LVDFVKHINRTKNPIHQSIIDFGGKGPGH---EVEIAMQWNGGYSESVHTFANTINTHEG 292

Query: 328 GTHE--SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTHE                                               P+F GQTKT
Sbjct: 293 GTHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQFEGQTKT 352

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444
           KL + + +  V+    +   H+   NP +A  ++   +  ++ R+  RK RE V RK+A 
Sbjct: 353 KLGNTEVKSFVQKVCNEQLTHWFEANPADAKVIVNKAVSSAQARIAARKARELVRRKSAT 412

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC       +EL++VEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  
Sbjct: 413 DLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARI 472

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           +++  N ++  ++ ALG     ++    LRY K+++M DADVDG HI++LLLT  ++ M 
Sbjct: 473 DRVLKNTEVQAIITALGTGIHDEFDITKLRYHKIVLMADADVDGQHISTLLLTLLFRFMR 532

Query: 565 DLIEQKHLF 573
            LIE  H+F
Sbjct: 533 PLIEHGHVF 541


>gi|317419224|emb|CBN81261.1| DNA topoisomerase 2-alpha [Dicentrarchus labrax]
          Length = 968

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 137/677 (20%), Positives = 249/677 (36%), Gaps = 69/677 (10%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE----------------------K 72
               S    Y          LE + +RP  YIG  +                        
Sbjct: 12  PKRLSVERIYQKK-----TQLEHILLRPDSYIGSVEPVTQQMWVYDEDVGLNCRDVTFVP 66

Query: 73  ALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTL 130
            L+ +F E++ NA D        + I++S+D  N  ++V +NG+GIPV  H K       
Sbjct: 67  GLYKIFDEILVNAADNKQRDNKMSCIKISIDVENNTISVWNNGKGIPVVEH-KVEKVYVP 125

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVT--VARQNTIFSQKFSRGI 188
            +I   L     +D+   +++GG +G G  + N  S +  V         +F Q +   +
Sbjct: 126 ALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKESKKVFKQTWYDNM 185

Query: 189 PLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
             +     +    +  T ITFRPD              A + +     A +S  V+  ++
Sbjct: 186 GRTGDSNIKSFNGEEYTCITFRPDLPKFKMSTLDKDTVALMTRRAYDIAGVSKGVRVEFN 245

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +                  G ++Y+   L+++        T   E         E  +
Sbjct: 246 GKRLPI--------------AGFRSYVDMYLKDKVDEVGNSLTVVHE---IVNNRWEVCL 288

Query: 307 AWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISA 366
              E+  +  S+ N+I T +GG H   +   +   + +     +NK  +++    +    
Sbjct: 289 TMSEKGFQQVSFVNSIATTKGGRHIDYVADQVVGKLIE-VVKKKNKAGVAVKPFQVKNHM 347

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
              ++  I  P F  QTK  +            L D F        I  + +      + 
Sbjct: 348 WLFVNCLIENPTFDSQTKENMTLQQKNFGSTCPLGDKFIKQATSCGIVESIMNW---VKF 404

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RN 483
           + + +  K+    + T I+ +       D     +    L + EGDSA   A        
Sbjct: 405 KAQSQLNKKCSAVKHTKIKGVPKLDDANDAGGKNSISCTLILTEGDSAKTLAVSGLGVVG 464

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED----LRYEKVI 539
           R    V PLRGK+LNV  A  ++I  N +I ++++ LG + +  Y + +    LRY K++
Sbjct: 465 RDRYGVFPLRGKMLNVREASLKQIMENAEINNIIKILGLQYKKNYSDPESLKSLRYGKIM 524

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599
           IMTD D DG+HI  LL+ F +     L+    L     P+ +++     +  +       
Sbjct: 525 IMTDQDQDGSHIKGLLINFIHHNWPSLLRHNFLEEFITPIIKVSHKKTQLSFYSIPEFNS 584

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
             +    H     +I  +KGLG   + + KE   D  +   +  +        +    + 
Sbjct: 585 WKDSQPNH--KSWKIKYYKGLGTSTSQEAKEYFSDMQRHR-IPFKYA-GPEDDEAITLAF 640

Query: 660 NKLMGTKADERFKFIQE 676
           +K    K +ER +++  
Sbjct: 641 SK---KKVEERKEWLTN 654


>gi|160891682|ref|ZP_02072685.1| hypothetical protein BACUNI_04137 [Bacteroides uniformis ATCC 8492]
 gi|317478257|ref|ZP_07937422.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|156859089|gb|EDO52520.1| hypothetical protein BACUNI_04137 [Bacteroides uniformis ATCC 8492]
 gi|316905564|gb|EFV27353.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 644

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 190/698 (27%), Positives = 315/698 (45%), Gaps = 84/698 (12%)

Query: 18  GSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEK 72
             +  +    E  D+    +  +S  Y   +IR L+ +E +R+R GMYIG       ++ 
Sbjct: 2   EDNNNMTLPLEEADNNITESPVSSVEYTDDNIRHLDDMEHIRVRSGMYIGRLGDGSQNDD 61

Query: 73  ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
            ++ L  EV+DN++DE   G    IEV+++ +  ++V D GRGIP            +E 
Sbjct: 62  GIYVLLKEVMDNSIDEFKMGAGKRIEVTIEDSLRVSVRDYGRGIPQGK--------LVEA 113

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
           + + L+ GGK+D+  ++ S GL+GVGI  VNALS    V   R   + +  F +G     
Sbjct: 114 V-SKLNTGGKYDSKAFKKSVGLNGVGIKAVNALSSRFEVRSYRDGKVRTAIFEKG--TLL 170

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
            +  E    + GT I F PD  +F +   F    +  + ++  YL+  +   ++  + ++
Sbjct: 171 SDVTEDSTEESGTYIFFEPDATLFLNY-SFQNQFVETLLRNYTYLNTGLTFIYNGQRIVS 229

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
                   ++     GL   +  K E+                      +E A     + 
Sbjct: 230 RHGLEDLLKDNMTSEGLYDIIHLKGED----------------------IEIAFTHTNQY 267

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILS 371
             E  S+ N   T +GGTH++ L+  + R IK++          +    D+    V  ++
Sbjct: 268 GEEYYSFVNGQHTTQGGTHQTALKEHIARTIKEFYN-------KNQEYADIRNGLVAAIA 320

Query: 372 VFIREPEFAGQTKTKLVSLDA---------------QRTVENALRDPFDHYLVQNPIEAT 416
           + + EP F  QTKTKL S +                 + V + ++   D+YL +NP+ A 
Sbjct: 321 IDVEEPMFESQTKTKLGSNNMWPAAPQEHKPAGPTVNKYVGDFIKTEVDNYLHKNPLVAE 380

Query: 417 KLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN--------IAHGTELFI 468
            +L+ + +  +ER       ++ R+ A +      KL DC  +            + +FI
Sbjct: 381 VMLQKIQDSEKERKAIAGVTKLARERAKKANLHNRKLRDCRYHLSDGKGKDQETESCIFI 440

Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528
            EGDSA GS  ++R+ + QAV  LRGK LN      + +  N++   L  AL      + 
Sbjct: 441 TEGDSASGSITKSRDVNTQAVFSLRGKPLNSYGLTKKVVYENEEFNLLQAALNIEDGIET 500

Query: 529 REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKS 588
               LRY KVI+ TDADVDG HI  L++TFF Q   DLI++ H++++  PLFR+    K+
Sbjct: 501 ----LRYNKVIVATDADVDGMHIRLLIITFFLQFFPDLIKKGHVYILQTPLFRVRNKKKT 556

Query: 589 VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648
            Y + EE + K +EE   +     EI+RFKGLGE+   + K          L +V + K 
Sbjct: 557 SYCYTEEERVKAIEELGPN----PEITRFKGLGEISPDEFKHFIG--KDMRLEQVSLRK- 609

Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
                  ++ +   MG    ER  FI       +D+ +
Sbjct: 610 ---TDLVKELLEFYMGKNTMERQNFIINNLVIEEDLAS 644


>gi|268531746|ref|XP_002631000.1| Hypothetical protein CBG02746 [Caenorhabditis briggsae]
          Length = 1506

 Score =  389 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 145/684 (21%), Positives = 259/684 (37%), Gaps = 71/684 (10%)

Query: 30  PDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD------------------- 70
             +      +  D Y   S      LE + +RP  YIG  +                   
Sbjct: 51  TKNGGSKKMAIEDIYQKKS-----QLEHILLRPDTYIGSVEYTEQTPMWVFNTEKNQLEQ 105

Query: 71  -----EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPK 123
                   L+ +F E++ NA D        N I+V +D     ++V +NG+GIPV  H K
Sbjct: 106 RDIRYVPGLYKIFDEILVNAADNKQRDPKMNTIKVVIDKERNSISVYNNGKGIPVTLH-K 164

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDE--LHVTVARQNTIFS 181
                  E+I  TL     +++   +++GG +G G  + N  S +  L  +    +  FS
Sbjct: 165 VEKVYVPELIFGTLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSTKFKLETSSKEYHKKFS 224

Query: 182 QKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLLKMTQSKAYLSG 239
           Q + + +        EK   +  T+ITF PD   F  K         + +     A  + 
Sbjct: 225 QTWVKNMTKEADPDVEKSTGEDFTKITFSPDLSKFKMKELDDDICHLMARRAYDVAGSTK 284

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            V    + ++   +              G + Y++    N+     E      E+ G   
Sbjct: 285 GVTVFLNGERIPVK--------------GFEDYVKMY-TNQFQNEGEPLKIAYEQVGD-- 327

Query: 300 GTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359
              + A+A  E+  +  S+ N+I T +GG H   +   +        +    K A++I  
Sbjct: 328 -RWQVALALSEKGFQQVSFVNSIATTKGGRHVDYVADQMVAKFIDSIKRKLTKTAMNIKP 386

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
             +       ++  I  P F  QTK  +            L + F      N      ++
Sbjct: 387 FQIKNHMWVFVNALIENPTFDSQTKETMTLQSKSFGSTCTLSEKFSK-AAGNVGITDAVM 445

Query: 420 EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
            WV  R ++     K+    + + ++ +       D     +    L + EGDSA   A 
Sbjct: 446 TWV--RFKQMDDLNKKCSKTKTSKLKGIPKLEDANDAGTKNSQQCTLILTEGDSAKTLAV 503

Query: 480 QARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED---- 532
              +   R    V PLRGK+LNV     ++I +N +I  +++ LG + + +Y  +D    
Sbjct: 504 SGLSIVGRDKYGVFPLRGKLLNVRDGNMKQIADNAEINAMIKILGLQYKKKYETDDDFKT 563

Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAH 592
           LRY KV++M D D DG+HI  L++ F +     LI++  +     P+ + T+G + +   
Sbjct: 564 LRYGKVMVMADQDQDGSHIKGLVINFVHHFWPSLIQRNFVEEFITPIVKATKGKEEISFF 623

Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652
                 +             +I  +KGLG   + + KE   D  +   +R +     +  
Sbjct: 624 SIPEYSEW--RMNTENWKTYKIKYYKGLGTSTSKEAKEYFSDMVRHR-IRFKYTGADDDN 680

Query: 653 KDTQDSINKLMGTKADERFKFIQE 676
                + +K    K DER  ++ +
Sbjct: 681 A-VDMAFSK---KKIDERKHWLTK 700


>gi|322786140|gb|EFZ12747.1| hypothetical protein SINV_05088 [Solenopsis invicta]
          Length = 1518

 Score =  389 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 141/694 (20%), Positives = 269/694 (38%), Gaps = 74/694 (10%)

Query: 22  KLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE---------- 71
                     S A  +++    Y   S      LE + +RP  YIG  +           
Sbjct: 9   AAGDGKPAAKSTAGKSKTIEGIYQKKS-----QLEHILLRPDTYIGSVEPVTEMMWVFDK 63

Query: 72  -------------KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGI 116
                          L+ +F E++ NA D        ++I++ +D  N  ++V +NG+GI
Sbjct: 64  EKEMMVQKEIKYVPGLYKIFDEILVNAADNKQRDPKMDMIKIDIDSENNTISVWNNGKGI 123

Query: 117 PVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQ 176
           PV  H K  N     +I   L     +D+   +++GG +G G  + N  S    V  A +
Sbjct: 124 PVVIH-KEENMYVPTMIFGHLLTSSNYDDEEEKVTGGRNGYGAKLCNIFSHRFTVETATK 182

Query: 177 NTIFSQKFSRG--IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLLKMTQ 232
               S K + G  +  +   + ++   +  T++TF PD   F  +       + + +   
Sbjct: 183 EYKKSLKQTWGNNMGKASEPRIKEYYGEDFTKVTFSPDLTKFKMQSLDDDIVSLMSRRAY 242

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             A  S  VK   +  +   + +              K Y+   ++ +            
Sbjct: 243 DVAASSKGVKVYLNGHRIPVKNF--------------KDYVDCYIKGKEDDVGNPLKVVY 288

Query: 293 EKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK 352
           E         E A+   ++  +  S+ N+I T +GG H   +   + + + +     +NK
Sbjct: 289 E---NCGPRWEVALTLSDKGFQQMSFVNSIATTKGGRHVDHVTELIVKQLIE-TLKKKNK 344

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             I+I    +       ++  I  P F  QTK  +         + AL D F   + +  
Sbjct: 345 AGITIKPFQIKNHLWIFVNCLINNPTFDSQTKENMTLQQKSFGSKCALTDKFITSITK-- 402

Query: 413 IEATKLLEWVIERSEERLRRRKQR--EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
                ++E V+  ++ +   + ++    +++  +  +       D     +    L + E
Sbjct: 403 ---IGVVEAVLSWAKFKADSQLEKLGPKSKQRKLHGIPKLEDANDAGTARSLECTLILTE 459

Query: 471 GDSAGGSAKQ---ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           GDSA   A     +  R    + PLRGK+LNV  A  ++I  N +I +L++ LG + + +
Sbjct: 460 GDSAKTMAVSGIASIGRDKYGIFPLRGKMLNVREATHKQILENAEINNLIKILGLQYKKK 519

Query: 528 YREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT 583
           Y   D    LRY K++IMTD D DG+HI  LL+ F +     L++   +     P+ + T
Sbjct: 520 YETRDDLKTLRYGKMMIMTDQDQDGSHIKGLLINFIHHNWPSLLKLNFIEEFITPIVKAT 579

Query: 584 QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRV 643
           +G++ +        +   +E +       +I  +KGLG   A + KE   +  +   +R 
Sbjct: 580 KGSQVLSFFSLPEFEMWKKETENFHT--YKIKYYKGLGTSTAKEAKEYFENMTRHR-IRF 636

Query: 644 EINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
                    ++   + +K      D+R  ++   
Sbjct: 637 RY-DGTQDDQNIIMAFSK---KCVDQRKDWLMNH 666


>gi|309365103|emb|CAP23826.2| hypothetical protein CBG_02746 [Caenorhabditis briggsae AF16]
          Length = 1482

 Score =  389 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 143/684 (20%), Positives = 258/684 (37%), Gaps = 71/684 (10%)

Query: 30  PDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD------------------- 70
             +      +  D Y   S      LE + +RP  YIG  +                   
Sbjct: 51  TKNGGSKKMAIEDIYQKKS-----QLEHILLRPDTYIGSVEYTEQTPMWVFNTEKNQLEQ 105

Query: 71  -----EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPK 123
                   L+ +F E++ NA D        N I+V +D     ++V +NG+GIPV  H K
Sbjct: 106 RDIRYVPGLYKIFDEILVNAADNKQRDPKMNTIKVVIDKERNSISVYNNGKGIPVTLH-K 164

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDE--LHVTVARQNTIFS 181
                  E+I  TL     +++   +++GG +G G  + N  S +  L  +    +  FS
Sbjct: 165 VEKVYVPELIFGTLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSTKFKLETSSKEYHKKFS 224

Query: 182 QKFSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSG 239
           Q + + +        EK   +  T+ITF PD       +        + +     A  + 
Sbjct: 225 QTWVKNMTKEADPDVEKSTGEDFTKITFSPDLSKFKMKELDDDICHLMARRAYDVAGSTK 284

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            V    + ++   +              G + Y++    N+     E      E+ G   
Sbjct: 285 GVTVFLNGERIPVK--------------GFEDYVKMY-TNQFQNEGEPLKIAYEQVGD-- 327

Query: 300 GTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359
              + A+A  E+  +  S+ N+I T +GG H   +   +        +    K A++I  
Sbjct: 328 -RWQVALALSEKGFQQVSFVNSIATTKGGRHVDYVADQMVAKFIDSIKRKLTKTAMNIKP 386

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
             +       ++  I  P F  QTK  +            L + F      N      ++
Sbjct: 387 FQIKNHMWVFVNALIENPTFDSQTKETMTLQSKSFGSTCTLSEKFSK-AAGNVGITDAVM 445

Query: 420 EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
            WV  R ++     K+    + + ++ +       D     +    L + EGDSA   A 
Sbjct: 446 TWV--RFKQMDDLNKKCSKTKTSKLKGIPKLEDANDAGTKNSQQCTLILTEGDSAKTLAV 503

Query: 480 QARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED---- 532
              +   R    V PLRGK+LNV     ++I +N +I  +++ LG + + +Y  +D    
Sbjct: 504 SGLSIVGRDKYGVFPLRGKLLNVRDGNMKQIADNAEINAMIKILGLQYKKKYETDDDFKT 563

Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAH 592
           LRY KV++M D D DG+HI  L++ F +     LI++  +     P+ + T+G + +   
Sbjct: 564 LRYGKVMVMADQDQDGSHIKGLVINFVHHFWPSLIQRNFVEEFITPIVKATKGKEEISFF 623

Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652
                 +             +I  +KGLG   + + KE   D  +   +R +     +  
Sbjct: 624 SIPEYSEW--RMNTENWKTYKIKYYKGLGTSTSKEAKEYFSDMVRHR-IRFKYTGADDDN 680

Query: 653 KDTQDSINKLMGTKADERFKFIQE 676
                + +K    K DER  ++ +
Sbjct: 681 A-VDMAFSK---KKIDERKHWLTK 700


>gi|196000919|ref|XP_002110327.1| hypothetical protein TRIADDRAFT_23201 [Trichoplax adhaerens]
 gi|190586278|gb|EDV26331.1| hypothetical protein TRIADDRAFT_23201 [Trichoplax adhaerens]
          Length = 1164

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 143/672 (21%), Positives = 264/672 (39%), Gaps = 66/672 (9%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTD---------------------EKALHHL 77
           S    Y   S      LE + +RP  YIG  +                        L+ +
Sbjct: 13  SVERIYQKKS-----QLEHILLRPDTYIGSVEHITQTMWVIEDGKMMNKSITYPPGLYKI 67

Query: 78  FSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILT 135
           F E++ NA D        + I++++D  N  L + +NGRGIPVE H +  N     +I  
Sbjct: 68  FDEILVNAADNKQRDPRMDTIKITIDPENNLLKIWNNGRGIPVEIHRE-ENVYVPTLIFG 126

Query: 136 TLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA--RQNTIFSQKFSRGIPLSPL 193
            L     +++   +++GG +G G  + N  S E  V          FSQ ++  +  +  
Sbjct: 127 HLLTSSNYNDDERKVTGGRNGYGAKLCNIFSTEFKVETYSADSGKQFSQTWNNNMSKARE 186

Query: 194 EKKE--KVRNKRGTRITFRPDPKIFGDKA--GFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            K    +   +  T ITF+PD + FG         + + +     A  +  VK   + D+
Sbjct: 187 PKITAIEKSKQEFTCITFKPDLQKFGLTHLTSDIVSLMTRRAYDIAAAARGVKVYLNGDR 246

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
              +           F   ++ +L  + ++      E      E      G  E  +   
Sbjct: 247 IPIKT----------FKDYVELFLANEEKDDGEEDKEKRKITHE---IVNGRWEVCLTAS 293

Query: 310 EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGI 369
           +   +  S+ N+I T +GGTH + +   L   +   A   +NK  I +    +       
Sbjct: 294 DRGFQQASFVNSIATTKGGTHVNHVVDQLVEKLMG-AVKKKNKGGIDVKPYQIKNHMWVF 352

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           ++  I  P F  QTK  +            L + F    +       ++L WV  +++ +
Sbjct: 353 INCLIENPSFDSQTKENMTLRAKSFGSSCNLSEKFIKGALG-CGVVERILNWVRFKTQAQ 411

Query: 430 LRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSN 486
           L ++     ++ + ++ +       D     +    L + EGDSA   A    +   R  
Sbjct: 412 LSKKCS--ASKHSKLKGIPKLDDANDAGTRNSSDCTLILTEGDSAKALAVSGLSVVGRDK 469

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE----DLRYEKVIIMT 542
             V PLRGK+LN   A S+++  N +I ++++ LG     +Y ++     LRY  ++IM 
Sbjct: 470 YGVFPLRGKLLNTREASSKQVMENAEINNIIKILGLHYNKKYNDDVSLKSLRYGNLMIMA 529

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILE 602
           D D DG+HI  LL+ F +     L++Q  L     P+ ++T+G   +  +     ++  +
Sbjct: 530 DQDQDGSHIKGLLINFIHHNWPSLLQQPFLKEFITPIVKVTKGKNEIAFYSIPEFEEWKQ 589

Query: 603 EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKL 662
               +     ++  +KGLG     + KE   D ++  +         +     Q + +K 
Sbjct: 590 NTASY--KSWKVKYYKGLGTSTPKEAKEYFADMSRHRVAF--RYDGNDDDTAIQLAFSKK 645

Query: 663 MGTKADERFKFI 674
           M     ER +++
Sbjct: 646 M---ISERKEWL 654


>gi|255012823|ref|ZP_05284949.1| DNA topoisomerase IV subunit B [Bacteroides sp. 2_1_7]
 gi|301307810|ref|ZP_07213766.1| putative DNA topoisomerase IV, B subunit [Bacteroides sp. 20_3]
 gi|300834153|gb|EFK64767.1| putative DNA topoisomerase IV, B subunit [Bacteroides sp. 20_3]
          Length = 621

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 191/661 (28%), Positives = 303/661 (45%), Gaps = 75/661 (11%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            Y+   I+ L+ +E +R RPGMYIG        +  ++ L  EV+DN++DE + GY   I
Sbjct: 13  EYNDDDIKTLDWMEHIRRRPGMYIGKLGDGSYADDGIYVLLKEVLDNSIDEYMMGYGKSI 72

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           EV++   G + V D GRG+P+           +  + + ++ G K+D+  ++ S GL+GV
Sbjct: 73  EVTI-EEGTVAVRDYGRGVPLGK---------VVDVSSKMNTGAKYDSKAFKKSVGLNGV 122

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           GI  VNALS    +T  R       ++S+ I     + +       GT++ F PD +IF 
Sbjct: 123 GIKAVNALSSYFLITSYRDGECKRVEYSKAIVTEESDIQ-PTGEANGTQVFFVPDREIFK 181

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           D   +    +  + ++  +L+  +   ++  +             FY   GL   L   +
Sbjct: 182 DYH-YKDEFIEGLLKNYVFLNSGLSIIYNGKR-------------FYSRNGLVDLLNENM 227

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
               L       G+          +E  I    +   E  S+ N   T +GGTH S  + 
Sbjct: 228 TTEPLYPIIHLKGE---------DIEVVITHSNQYGEEYYSFVNGQHTTQGGTHLSAFKE 278

Query: 337 ALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA---- 392
           ++ R IK+Y          +    D+    V  +S+ + EP F  QTKTKL S D     
Sbjct: 279 SVGRVIKEYYN-------KNFEYSDIRAGIVAAISIKVEEPVFESQTKTKLGSKDIGPDG 331

Query: 393 ---QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
               + + + +++  D+YL +N   +  LL+ ++E  +ER       ++ R+ A +    
Sbjct: 332 PTVAKFIGDFIKNDLDNYLHKNMETSELLLKKILESEKERKAIAGVTKLARERAKKANLH 391

Query: 450 PGKLADCSQNIAH-------GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
             KL DC  ++          + +FI EGDSA GS  ++RN + QAV  LRGK LN    
Sbjct: 392 NKKLRDCRIHLTDSKGDLLEESSIFITEGDSASGSITKSRNPNYQAVFSLRGKPLNSYGL 451

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
             + +  N++   L  AL          E LRY KVII TDADVDG HI  LL+TFF Q 
Sbjct: 452 TKKIVYENEEFNLLQAALNIEDGL----EGLRYNKVIIATDADVDGMHIRLLLITFFLQF 507

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
             DLI++ H++++  PLFR+    K+ Y + EE +   +    K+     EI+RFKGLGE
Sbjct: 508 FPDLIKRNHVYILQTPLFRVRNRQKTWYCYSEEERLAAIAAAGKN----PEITRFKGLGE 563

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           +   + K          L  V + K+       +D +   MG    ER  FI +     +
Sbjct: 564 ISPDEFKHFIG--KDIRLDPVTMKKE----DLVKDMLEFYMGKNTMERQNFIIDNLVVEE 617

Query: 683 D 683
           D
Sbjct: 618 D 618


>gi|326473740|gb|EGD97749.1| DNA topoisomerase II [Trichophyton tonsurans CBS 112818]
          Length = 1678

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 137/692 (19%), Positives = 266/692 (38%), Gaps = 64/692 (9%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-------------------- 70
           ++ +F  ++      +   + +  LE +  RP  YIG  +                    
Sbjct: 112 ENGSFTAETVEGGGSSEKYQKITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYRE 171

Query: 71  ---EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFP 125
                 L+ +F E++ NA D        + I V+LD   G ++V +NGRGIPVE H K  
Sbjct: 172 VSFVPGLYKIFDEILVNAADNKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKK-E 230

Query: 126 NKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK-- 183
                E+I   L     +++   +++GG +G G  + N  S+E  V  A        K  
Sbjct: 231 QIYIPELIFGHLLTSSNYNDMQEKVTGGRNGYGAKLCNIFSNEFTVETADSKQKKKFKLT 290

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDP-KIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
           ++  +      K  + +    T++TF+PD  K   D    D   L+K        +    
Sbjct: 291 WTNNMSTMGKAKITECKGDDYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCGTS 350

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
              +  +   + +    +         +    T   +++ I +E          +     
Sbjct: 351 VKLNGTRIPIKSFKKYMEMYTKAIKAERGEDSTSASDKNDIITE----------SPDRRW 400

Query: 303 EWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDL 362
           E      + + +  S+ N+I T  GGTH + +   +   +   A   +NK   ++ +  +
Sbjct: 401 EIGFTVSDGSFQQVSFVNSIATTSGGTHVNYISDQICNKLAD-ALKKKNKAGATLKAAQI 459

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
                  ++  I  P F  QTK +L +  +Q   +  + D F   +++  +        +
Sbjct: 460 KNHIFLFVNSQIVNPAFTSQTKEQLTTRASQFGSKCVVSDDFLKKVMKTRVMDD-----I 514

Query: 423 IERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           +  +E++  +  ++    + +                  H   L + EGDSA G A   R
Sbjct: 515 LHFAEKKADQILKKTDGNRRSRMNNPKLTDANKAGTKDGHHCTLILTEGDSAKGLAMAGR 574

Query: 483 N---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKV 538
                    V PLRGK+LNV  A  ++I  N +I ++   +G + + +Y +   LRY  +
Sbjct: 575 AVVGPDLFGVFPLRGKLLNVRDASVDQISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHL 634

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQGT-----KSVYAH 592
           +IMTD D DG+HI  LL+ +       L++    L     P+ ++ +G       +    
Sbjct: 635 MIMTDQDHDGSHIKGLLINYLQVAFPTLLKIPGFLIEFITPIVKVWKGNPKNPTHTKSFF 694

Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652
                ++  E        K +   +KGLG       +    D ++       +       
Sbjct: 695 TLPEYEEWKEAHA--HDKKWQKKYYKGLGTSSTEDAQIYFQDLDRHLKQFHTLQD--KEA 750

Query: 653 KDTQDSINKLMGTKADERFKFIQE--RASFID 682
           +  + + +K    KADER +++++    +++D
Sbjct: 751 ELIELAFSK---KKADERKEWLRQFKPGTYLD 779


>gi|150009930|ref|YP_001304673.1| DNA topoisomerase IV subunit B [Parabacteroides distasonis ATCC
           8503]
 gi|256838705|ref|ZP_05544215.1| DNA topoisomerase IV, B subunit [Parabacteroides sp. D13]
 gi|262382766|ref|ZP_06075903.1| DNA topoisomerase IV subunit B [Bacteroides sp. 2_1_33B]
 gi|298374287|ref|ZP_06984245.1| DNA topoisomerase IV [Bacteroides sp. 3_1_19]
 gi|149938354|gb|ABR45051.1| DNA topoisomerase IV subunit B [Parabacteroides distasonis ATCC
           8503]
 gi|256739624|gb|EEU52948.1| DNA topoisomerase IV, B subunit [Parabacteroides sp. D13]
 gi|262295644|gb|EEY83575.1| DNA topoisomerase IV subunit B [Bacteroides sp. 2_1_33B]
 gi|298268655|gb|EFI10310.1| DNA topoisomerase IV [Bacteroides sp. 3_1_19]
          Length = 621

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 191/661 (28%), Positives = 303/661 (45%), Gaps = 75/661 (11%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            Y+   I+ L+ +E +R RPGMYIG        +  ++ L  EV+DN++DE + GY   I
Sbjct: 13  EYNDDDIKTLDWMEHIRRRPGMYIGKLGDGSYADDGIYVLLKEVLDNSIDEYMMGYGKSI 72

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           EV++   G + V D GRG+P+           +  + + ++ G K+D+  ++ S GL+GV
Sbjct: 73  EVTI-EEGTVAVRDYGRGVPLGK---------VVDVSSKMNTGAKYDSKAFKKSVGLNGV 122

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           GI  VNALS    +T  R       ++S+ I     + +       GT++ F PD +IF 
Sbjct: 123 GIKAVNALSSYFLITSYRDGECKRVEYSKAIVTEESDIQ-PTGEANGTQVFFVPDREIFK 181

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           D   +    +  + ++  +L+  +   ++  +             FY   GL   L   +
Sbjct: 182 DYH-YKDEFIEGLLKNYVFLNSGLSIIYNGKR-------------FYSRNGLVDLLNENM 227

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
               L       G+          +E  I    +   E  S+ N   T +GGTH S  + 
Sbjct: 228 TTEPLYPIIHLKGE---------DIEVVITHSNQYGEEYYSFVNGQHTTQGGTHLSAFKE 278

Query: 337 ALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA---- 392
           ++ R IK+Y          +    D+    V  +S+ + EP F  QTKTKL S D     
Sbjct: 279 SIGRVIKEYYN-------KNFEYSDIRAGIVAAISIKVEEPVFESQTKTKLGSKDIGPDG 331

Query: 393 ---QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
               + + + +++  D+YL +N   +  LL+ ++E  +ER       ++ R+ A +    
Sbjct: 332 PTVAKFIGDFIKNDLDNYLHKNMETSELLLKKILESEKERKAIAGVTKLARERAKKANLH 391

Query: 450 PGKLADCSQNIAH-------GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
             KL DC  ++          + +FI EGDSA GS  ++RN + QAV  LRGK LN    
Sbjct: 392 NKKLRDCRIHLTDSKGDLLEESSIFITEGDSASGSITKSRNPNYQAVFSLRGKPLNSYGL 451

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
             + +  N++   L  AL          E LRY KVII TDADVDG HI  LL+TFF Q 
Sbjct: 452 TKKIVYENEEFNLLQAALNIEDGL----EGLRYNKVIIATDADVDGMHIRLLLITFFLQF 507

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
             DLI++ H++++  PLFR+    K+ Y + EE +   +    K+     EI+RFKGLGE
Sbjct: 508 FPDLIKRNHVYILQTPLFRVRNRQKTWYCYSEEERLAAIAAAGKN----PEITRFKGLGE 563

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           +   + K          L  V + K+       +D +   MG    ER  FI +     +
Sbjct: 564 ISPDEFKHFIG--KDIRLDPVTMKKE----DLVKDMLEFYMGKNTMERQNFIIDNLVVEE 617

Query: 683 D 683
           D
Sbjct: 618 D 618


>gi|326482946|gb|EGE06956.1| DNA topoisomerase II [Trichophyton equinum CBS 127.97]
          Length = 1678

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 137/692 (19%), Positives = 266/692 (38%), Gaps = 64/692 (9%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-------------------- 70
           ++ +F  ++      +   + +  LE +  RP  YIG  +                    
Sbjct: 112 ENGSFTAETVEGGGSSEKYQKITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYRE 171

Query: 71  ---EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFP 125
                 L+ +F E++ NA D        + I V+LD   G ++V +NGRGIPVE H K  
Sbjct: 172 VSFVPGLYKIFDEILVNAADNKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKK-E 230

Query: 126 NKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK-- 183
                E+I   L     +++   +++GG +G G  + N  S+E  V  A        K  
Sbjct: 231 QIYIPELIFGHLLTSSNYNDMQEKVTGGRNGYGAKLCNIFSNEFTVETADSKQKKKFKLT 290

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDP-KIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
           ++  +      K  + +    T++TF+PD  K   D    D   L+K        +    
Sbjct: 291 WTNNMSTMGKAKITECKGDDYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCGTS 350

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
              +  +   + +    +         +    T   +++ I +E          +     
Sbjct: 351 VKLNGTRIPIKSFKKYMEMYTKAIKAERGEDSTSASDKNDIITE----------SPDRRW 400

Query: 303 EWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDL 362
           E      + + +  S+ N+I T  GGTH + +   +   +   A   +NK   ++ +  +
Sbjct: 401 EIGFTVSDGSFQQVSFVNSIATTSGGTHVNYISDQICNKLAD-ALKKKNKAGATLKAAQI 459

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
                  ++  I  P F  QTK +L +  +Q   +  + D F   +++  +        +
Sbjct: 460 KNHIFLFVNSQIVNPAFTSQTKEQLTTRASQFGSKCVVSDDFLKKVMKTRVMDD-----I 514

Query: 423 IERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           +  +E++  +  ++    + +                  H   L + EGDSA G A   R
Sbjct: 515 LHFAEKKADQILKKTDGNRRSRMNNPKLTDANKAGTKDGHHCTLILTEGDSAKGLAMAGR 574

Query: 483 N---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKV 538
                    V PLRGK+LNV  A  ++I  N +I ++   +G + + +Y +   LRY  +
Sbjct: 575 AVVGPDLFGVFPLRGKLLNVRDASVDQISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHL 634

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQGT-----KSVYAH 592
           +IMTD D DG+HI  LL+ +       L++    L     P+ ++ +G       +    
Sbjct: 635 MIMTDQDHDGSHIKGLLINYLQVAFPTLLKIPGFLIEFITPIVKVWKGNPKNPTHTKSFF 694

Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652
                ++  E        K +   +KGLG       +    D ++       +       
Sbjct: 695 TLPEYEEWKEAHA--HDKKWQKKYYKGLGTSSTEDAQIYFQDLDRHLKQFHTLQD--KEA 750

Query: 653 KDTQDSINKLMGTKADERFKFIQE--RASFID 682
           +  + + +K    KADER +++++    +++D
Sbjct: 751 ELIELAFSK---KKADERKEWLRQFKPGTYLD 779


>gi|149278658|ref|ZP_01884794.1| DNA topoisomerase IV subunit B [Pedobacter sp. BAL39]
 gi|149230653|gb|EDM36036.1| DNA topoisomerase IV subunit B [Pedobacter sp. BAL39]
          Length = 642

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 174/663 (26%), Positives = 296/663 (44%), Gaps = 74/663 (11%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYA 94
           A  NY+  SIR L+  E +R+RPGMYIG        +  ++ L  E++DN++DE + G  
Sbjct: 2   AEPNYNEDSIRSLDWKEHIRLRPGMYIGKLGDGSAQDDGIYVLLKEIVDNSIDEFVMGSG 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             IE+++  +  + V D GRGIP+           +   ++ ++ GGK+D++ ++ S GL
Sbjct: 62  RTIEITV-SDQKVNVRDYGRGIPLGK---------VIDCVSKINTGGKYDSNAFQKSVGL 111

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           +GVG   VNALS    V   R N     +FS+G              + GT ITF PD  
Sbjct: 112 NGVGTKAVNALSTAFSVQSYRDNKTKKVEFSKGEITIDNPII-DTTQRNGTAITFYPDES 170

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   +    +  M  +  +L+  +   ++  K             +    GL   L 
Sbjct: 171 IFRNYH-YIPDFVESMIWNYVFLNAGLTINFNGQK-------------YLSERGLYDLLT 216

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333
             +    +    I     +        +E A+   ++  E    + N   T +GGTH++ 
Sbjct: 217 KHVGAEVMRYPIIHLKGHD--------IEIAMTHGQQYGEDYHSFVNGQNTTQGGTHQAA 268

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA- 392
            R A+ + I+++ +           + D+  S V  +SV ++EP F  QTKTKL S +  
Sbjct: 269 FREAVVKTIREFYK-------KEFDASDIRGSIVAAISVRVQEPVFESQTKTKLGSQNMG 321

Query: 393 ------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
                 +  + + ++   D YL ++   A  LL+ +++   ER      +++    A + 
Sbjct: 322 PEGPSVRTFINDFVKKELDDYLHKHADVADALLKRILQSERERKDIAGIKKLANDRAKKA 381

Query: 447 LRLPGKLADC------SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
                KL DC      +    + T LFI EGDSA GS  ++R+   QAV  L+GK LN  
Sbjct: 382 SLHNKKLRDCKVHFNSTHEKRYETTLFITEGDSASGSITKSRDVDCQAVFSLKGKPLNCY 441

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
               + +  N++   L  AL          + L Y  ++I TDADVDG HI  L++TFF 
Sbjct: 442 ELTKKVVYENEEFNLLQHALNIEDGL----DGLHYNNIVIATDADVDGMHIRLLMMTFFL 497

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           Q   DL+   H++++  PLFR+    +++Y + +E ++  + +       K EI+RFKGL
Sbjct: 498 QFFPDLVRSGHVYILQTPLFRVRNKKETIYCYSDEERKAAIAKLG----SKPEITRFKGL 553

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GE+   +               + ++  +   +  +  +   MG    +R + I      
Sbjct: 554 GEISPDEFGLFIG-------KDIRLDPVILKDQTIKSLLEYYMGKNTPDRQQHIIRNLRI 606

Query: 681 IDD 683
             D
Sbjct: 607 EKD 609


>gi|254880970|ref|ZP_05253680.1| DNA topoisomerase IV subunit B [Bacteroides sp. 4_3_47FAA]
 gi|294777378|ref|ZP_06742829.1| putative DNA topoisomerase [Bacteroides vulgatus PC510]
 gi|319639978|ref|ZP_07994705.1| DNA topoisomerase IV subunit B [Bacteroides sp. 3_1_40A]
 gi|254833763|gb|EET14072.1| DNA topoisomerase IV subunit B [Bacteroides sp. 4_3_47FAA]
 gi|294448446|gb|EFG16995.1| putative DNA topoisomerase [Bacteroides vulgatus PC510]
 gi|317388256|gb|EFV69108.1| DNA topoisomerase IV subunit B [Bacteroides sp. 3_1_40A]
          Length = 625

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 189/670 (28%), Positives = 296/670 (44%), Gaps = 79/670 (11%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGY 93
           + +  Y   +IR L  +E VR RPGMYIG        E  ++ L  E+IDN++DE     
Sbjct: 10  NPAVEYTDDNIRHLSDMEHVRTRPGMYIGKLGDGSHAEDGIYVLLKEIIDNSIDEFKMQA 69

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
              IE+ ++ N  ++V D GRGIP     +          ++ L+ GGK+D+  ++ S G
Sbjct: 70  GKKIEIIIEENLRVSVRDYGRGIPQGKLIE---------AVSVLNTGGKYDSKAFKKSVG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           L+GVG+  VNALS    V   R   +    F++G  L+   +      + GT I F PD 
Sbjct: 121 LNGVGVKAVNALSSRFEVRSYRDGKVRIATFAKGDLLTDTTQD--TTEENGTYIFFEPDN 178

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            +  +   F    +  M ++  YL+  +   ++  +                  GL   L
Sbjct: 179 -LLFENYSFRPEFVETMLRNYTYLNTGLAIIYNGQRI-------------LSRNGLVDLL 224

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
              +    L       G+          +E A     +   E  S+ N   T +GGTH+S
Sbjct: 225 NDNMTAVGLYPIIHLKGE---------DIEIAFTHTGQYGEEYYSFVNGQHTTQGGTHQS 275

Query: 333 GLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
             +  + R IK+Y          ++   D+    V  ++V + EP F  QTK KL S + 
Sbjct: 276 AFKEHIARTIKEYFN-------KNMDYADIRNGLVAAIAVNVEEPLFESQTKIKLGSTNM 328

Query: 393 QR-------TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIR 445
                     V + ++   D+YL ++   A  +L+ + E  +ER       ++ R+ A +
Sbjct: 329 APGGPTVNKFVGDFVKTEVDNYLHKHTDVADVMLQKIQESEKERKAIAGVTKLARERAKK 388

Query: 446 KLRLPGKLADCSQN-------IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
                 KL DC  +           + +FI EGDSA GS  ++R+ + QAV  LRGK LN
Sbjct: 389 ANLHNRKLRDCRFHLNDAKGDKKEESCIFITEGDSASGSITKSRDVNTQAVFSLRGKPLN 448

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
                 + +  N++   L  AL          E LRY KVI+ TDADVDG HI  LL+TF
Sbjct: 449 SYGLTKKIVYENEEFNLLQAALNIE----DGMEGLRYNKVIVATDADVDGMHIRLLLITF 504

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEI 614
           F Q   DLI++ H++++  PLFR+    K    +VY + EE +   +E    +     EI
Sbjct: 505 FLQFFPDLIKKGHVYILQTPLFRVRNRKKGVYETVYCYSEEERVAAIERLSPN----PEI 560

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
           +RFKGLGE+   + K          L +V + K        ++ +   MG    ER  FI
Sbjct: 561 TRFKGLGEISPDEFKHFIG--KDMRLEQVSLRK----TDLVKELLEFYMGKNTMERQNFI 614

Query: 675 QERASFIDDV 684
            +     +D+
Sbjct: 615 IDNLVVEEDI 624


>gi|150003803|ref|YP_001298547.1| DNA topoisomerase IV subunit B [Bacteroides vulgatus ATCC 8482]
 gi|149932227|gb|ABR38925.1| DNA topoisomerase IV subunit B [Bacteroides vulgatus ATCC 8482]
          Length = 625

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 189/670 (28%), Positives = 296/670 (44%), Gaps = 79/670 (11%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGY 93
           + +  Y   +IR L  +E VR RPGMYIG        E  ++ L  E+IDN++DE     
Sbjct: 10  NPAVEYTDDNIRHLSDMEHVRTRPGMYIGKLGDGSHAEDGIYVLLKEIIDNSIDEFKMQA 69

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
              IE+ ++ N  ++V D GRGIP     +          ++ L+ GGK+D+  ++ S G
Sbjct: 70  GKKIEIIIEENLRVSVRDYGRGIPQGKLIE---------AVSVLNTGGKYDSKAFKKSVG 120

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           L+GVG+  VNALS    V   R   +    F++G  L+   +      + GT I F PD 
Sbjct: 121 LNGVGVKAVNALSSRFEVRSYRDGKVRIATFAKGDLLTDTTQD--TTEENGTYIFFEPDN 178

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            +  +   F    +  M ++  YL+  +   ++  +                  GL   L
Sbjct: 179 -LLFENYSFRPEFVETMLRNYTYLNTGLAIIYNGQRI-------------LSRNGLVDLL 224

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
              +    L       G+          +E A     +   E  S+ N   T +GGTH+S
Sbjct: 225 NDNMTAVGLYPIIHLKGE---------DIEIAFTHTGQYGEEYYSFVNGQHTTQGGTHQS 275

Query: 333 GLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
             +  + R IK+Y          ++   D+    V  ++V + EP F  QTK KL S + 
Sbjct: 276 AFKEHMARTIKEYFN-------KNMDYADIRNGLVAAIAVNVEEPLFESQTKIKLGSTNM 328

Query: 393 QR-------TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIR 445
                     V + ++   D+YL ++   A  +L+ + E  +ER       ++ R+ A +
Sbjct: 329 APGGPTVNKFVGDFVKTEVDNYLHKHTDVADVMLQKIQESEKERKAIAGVTKLARERAKK 388

Query: 446 KLRLPGKLADCSQN-------IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
                 KL DC  +           + +FI EGDSA GS  ++R+ + QAV  LRGK LN
Sbjct: 389 ANLHNRKLRDCRFHLNDAKGDKKEESCIFITEGDSASGSITKSRDVNTQAVFSLRGKPLN 448

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
                 + +  N++   L  AL          E LRY KVI+ TDADVDG HI  LL+TF
Sbjct: 449 SYGLTKKIVYENEEFNLLQAALNIE----DGMEGLRYNKVIVATDADVDGMHIRLLLITF 504

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEI 614
           F Q   DLI++ H++++  PLFR+    K    +VY + EE +   +E    +     EI
Sbjct: 505 FLQFFPDLIKKGHVYILQTPLFRVRNRKKGVYETVYCYSEEERIAAIERLSPN----PEI 560

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
           +RFKGLGE+   + K          L +V + K        ++ +   MG    ER  FI
Sbjct: 561 TRFKGLGEISPDEFKHFIG--KDMRLEQVSLRK----TDLVKELLEFYMGKNTMERQNFI 614

Query: 675 QERASFIDDV 684
            +     +D+
Sbjct: 615 IDNLVVEEDI 624


>gi|156538202|ref|XP_001601580.1| PREDICTED: similar to topoisomerase II [Nasonia vitripennis]
          Length = 1510

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 138/666 (20%), Positives = 262/666 (39%), Gaps = 69/666 (10%)

Query: 50  RILEGLEPVRMRPGMYIGGTDE-----------------------KALHHLFSEVIDNAM 86
           +    LE + +RP  YIG  +                          L+ +F E++ NA 
Sbjct: 27  QKKTQLEHILLRPDTYIGSVEPVTELMWIYDKEKEMMIQKEIKYVPGLYKIFDEILVNAA 86

Query: 87  DEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144
           D        + I++ +D  N  ++V +NG+GIPV  H K  N     +I   L     +D
Sbjct: 87  DNKQRDPKMDSIKIDIDAENNTISVWNNGKGIPVVIH-KEENMYVPTMIFGHLLTSSNYD 145

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG--IPLSPLEKKEKVRNK 202
           ++  +++GG +G G  + N  S    V  A +    S K + G  +  +   K ++   +
Sbjct: 146 DAEEKVTGGRNGYGAKLCNIFSHRFTVETACKEYKKSLKQTWGNNMGKASEAKIKEFHGE 205

Query: 203 RGTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
             T++TF PD              A + +     A  S  VK   +  +   + +     
Sbjct: 206 DFTKVTFSPDLSKFKMEKLDEDVVALMSRRAYDIAASSRGVKVFLNGTRVPVKSF----- 260

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCN 320
                    K Y+   ++ +   +        E         E AI   ++  +  S+ N
Sbjct: 261 ---------KDYVDLYIKGKEDDTGNPLKITYE---NCGPRWEVAITLSDKGFQQMSFVN 308

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFA 380
           +I T +GG H   +   + + + +     +NK  + I    +       ++  I  P F 
Sbjct: 309 SIATTKGGRHVDHVTDMVVKQLIE-TLKKKNKAGVQIKPFQIKNHLWVFINCLINNPTFD 367

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR--EV 438
            QTK  +         +  L + F        +  + ++E V+  ++ +   + Q+    
Sbjct: 368 SQTKENMTLQQKSFGSKCTLSEKFI-----TNVTKSGIVESVLSWAKFKADSQLQKLGPK 422

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ---ARNRSNQAVLPLRGK 495
           +++  ++ +       D     +    L + EGDSA   A     +  R    V PL+GK
Sbjct: 423 SKQRKLQGIPKLEDANDAGTARSLDCTLILTEGDSAKSMAVSGIASIGRDKYGVFPLKGK 482

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED----LRYEKVIIMTDADVDGAHI 551
           ILNV  A  ++I  N +I +L++ LG + + +Y   D    LRY K++IMTD D DG+HI
Sbjct: 483 ILNVREATHKQILENAEINNLIKILGLQYKKKYETRDDLKTLRYGKIMIMTDQDQDGSHI 542

Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK 611
             LL+ F +     L++   +     P+ +  +G   +        +   +E +      
Sbjct: 543 KGLLINFIHHNWPSLLKLNFIEEFITPIVKARKGNHVLSFFSLPEFEAWKKETENFHT-- 600

Query: 612 IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERF 671
            +I  +KGLG   A + KE   +  +   +R   + D++  ++   + +K      D+R 
Sbjct: 601 YKIKYYKGLGTSTAQEAKEYFENMARHR-IRFRYDGDVDD-QNIIMAFSK---KCVDQRK 655

Query: 672 KFIQER 677
            ++   
Sbjct: 656 DWLTNH 661


>gi|195484462|ref|XP_002090705.1| GE12650 [Drosophila yakuba]
 gi|194176806|gb|EDW90417.1| GE12650 [Drosophila yakuba]
          Length = 1441

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 144/687 (20%), Positives = 253/687 (36%), Gaps = 73/687 (10%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD---------------------- 70
                 S    Y   S      LE + +RP  YIG  +                      
Sbjct: 3   NGNKAMSIEQMYQKKS-----QLEHILLRPDSYIGSVEFTKELMWVYDKSQNRMVQREIS 57

Query: 71  -EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNK 127
               L+ +F E++ NA D        N I++ +D     ++V +NG+GIPV  H K    
Sbjct: 58  FVPGLYKIFDEILVNAADNKQRDKSMNTIKIDIDPERNIVSVWNNGQGIPVTMH-KEQKM 116

Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187
               +I   L     +++   +++GG +G G  + N  S    V  A +    S K + G
Sbjct: 117 YVPTMIFGHLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSTSFTVETATREYRKSFKQTWG 176

Query: 188 --IPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
             +  +   + +       TRITF PD              A + +     A  S  V  
Sbjct: 177 NNMGKASDVQIKDFNGTDYTRITFSPDLAKFKMETLDEDIVALMSRRAYDVAASSKGVSV 236

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
             + +K                    K Y+   +++    S        E         E
Sbjct: 237 FLNGNK--------------LSVRNFKDYIDLHVKSSDDDSGPPIKIVHE---VANERWE 279

Query: 304 WAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLM 363
            A    +   +  S+ N+I T +GG H   +   L + + +     +NK  I+I    + 
Sbjct: 280 VACCPSDRGFQQVSFVNSIATYKGGRHVDHVVDNLIKQLLE-VLKKKNKGGINIKPFQVR 338

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                 ++  I  P F  QTK  +         +  L + F      N +  + ++E V+
Sbjct: 339 NHLWVFVNCLIENPTFDSQTKENMTLQQKGFGSKCTLSEKFI-----NNMSKSGIVESVL 393

Query: 424 ERSEERLRRRKQREVNRKTAIRKLRLPGKLAD-CSQNIAHGTELFIVEGDSAGGSAKQA- 481
             ++ + +    +   RK++  K     + A+      +    L + EGDSA   A    
Sbjct: 394 AWAKFKAQNDIAKTGGRKSSKIKGIPKLEDANEAGGKNSINCTLILTEGDSAKSLAVSGL 453

Query: 482 --RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED----LRY 535
               R+   V PLRGK+LNV  A  +++  N +I +L + +G + + +Y  ED    LRY
Sbjct: 454 GVIGRNFYGVFPLRGKLLNVREANFKQLSENAEINNLCKIIGLQYKKKYLTEDDLKTLRY 513

Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEE 595
            KV+IMTD D DG+HI  LL+ F +    +L+    L     P+ + T+  + +  +   
Sbjct: 514 GKVMIMTDQDQDGSHIKGLLINFIHTNWPELLRLPFLEEFITPIVKATKKNEELSFYSLP 573

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             ++   +   H      I  +KGLG   + + KE   D  +  +L           +  
Sbjct: 574 EFEEWKNDTANHHT--YNIKYYKGLGTSTSKEAKEYFQDMERHRILF--KYDGSVDDESI 629

Query: 656 QDSINKLMGTKADERFKFIQERASFID 682
             + +K      + R  ++      + 
Sbjct: 630 VMAFSK---KHIESRKVWLTNHMDEVK 653


>gi|189502056|ref|YP_001957773.1| DNA topoisomerase IV subunit B [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497497|gb|ACE06044.1| hypothetical protein Aasi_0648 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 626

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 195/656 (29%), Positives = 307/656 (46%), Gaps = 73/656 (11%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            Y  ++IR L+  E +R+RPGMYIG        +  ++ LF EVIDN++DE + GY   I
Sbjct: 5   QYTEANIRSLDWREHIRLRPGMYIGKLGDGSAQDDGIYVLFKEVIDNSIDEYVMGYGKRI 64

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           ++ L     +TV D GRGIP+           +   ++ ++ GGK+D  +++ S GL+GV
Sbjct: 65  DIQLTA-SQVTVRDFGRGIPLGK---------VVDCVSKINTGGKYDTQSFQKSVGLNGV 114

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G   VNALS        R+       FS+G  L     +   + K GT I+F PDP +F 
Sbjct: 115 GTKAVNALSAHFKAQSFREGKTKVAIFSQGKLLEESPIQ-DTKEKDGTLISFEPDPTLFN 173

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    + +   + A+L+  +K   +  +             ++   GL   L  K 
Sbjct: 174 NFR-FLPHFVEEQLWNYAFLNAGLKIYLNGQE-------------YFSKNGLLDLLNRKT 219

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           +  SL    I    T+        +E A+    +   E  S+ N   T +GGTH +  + 
Sbjct: 220 DEESLCYPIIHMKDTD--------IEIALTHNNQYGEEYYSFVNGQFTTQGGTHLAAFKE 271

Query: 337 ALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA---- 392
           A  + I+ +      K+       D+  S VG +SV ++EP F  QTKTKL S       
Sbjct: 272 AFAKTIRDFY-----KKDFDAT--DIRASVVGAISVRVQEPVFESQTKTKLGSQQIGPEG 324

Query: 393 ---QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
              +  + + ++   D+YL +NP  A  LL  +++   ER      +++  + A +    
Sbjct: 325 PSIRTFINDFVKRELDNYLHKNPETAEALLSRILQSERERKDIAGIKKLANERAKKASLH 384

Query: 450 PGKLADC------SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
             KL DC      +      + +FI EG+SA GS  ++R+   QAV  LRGK LN     
Sbjct: 385 NKKLRDCRIHYNTTHKDRDNSMVFITEGNSASGSITKSRDVQTQAVFSLRGKPLNCFGYT 444

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            + +  N+++  L  AL          E LRY KVII TDADVDG HI  L+LT+F Q  
Sbjct: 445 KKLVYENEELNLLQHALNIEDGL----EGLRYRKVIIATDADVDGMHIRLLILTYFLQFF 500

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
            +L+   H++L+  PLFR+    K++Y ++E  KQ+ +++  K      EI+RFKGLGE+
Sbjct: 501 PELVRNGHVYLLETPLFRVRNKQKTLYCYNETEKQQAIQQLGKQ----PEITRFKGLGEI 556

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679
            A + K       +  +  V + K+          ++  MG    ER  FI +   
Sbjct: 557 SADEFKNFIG--TQMRIEPVTLRKET----SIHQLLSFYMGKNTQERQNFIIDNLK 606


>gi|316974528|gb|EFV58014.1| DNA topoisomerase 2-alpha [Trichinella spiralis]
          Length = 1357

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 139/713 (19%), Positives = 272/713 (38%), Gaps = 83/713 (11%)

Query: 12  LPPQSQGSSEKLKKSGEIP--------------DSPAFANQSASDNYDASSIRILEGLEP 57
            P  S       KK+ ++P               +      +    Y   S      LE 
Sbjct: 7   SPNTSNSKGTSKKKNVDVPHSDPLGVFESLDEIKASGKKRPTIESIYQKKS-----QLEH 61

Query: 58  VRMRPGMYIGGTDE-----------------------KALHHLFSEVIDNAMDEVIAGY- 93
           + +RP  YIG  +                          L+ ++ E++ NA D       
Sbjct: 62  ILIRPDTYIGSIEPHTENMWVFDEEQQKMVIRELTYVPGLYKIYDEIVVNAADNKQRDPS 121

Query: 94  ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
            N I++S++     + V +NG+GIPV  H K       E+I  TL     +D++  +++G
Sbjct: 122 MNCIKISINATKNEIMVWNNGKGIPVVEH-KEEKMYVPEMIFGTLLTSSNYDDTERKVTG 180

Query: 153 GLHGVGISVVNALSDELHVT--VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           G +G G  + N  S    V          F Q +++ +  +         ++  T + F 
Sbjct: 181 GRNGYGAKLCNIFSKRFVVETSCREYKKHFKQVWTKNMTATEKPVISDCVDQDFTCVRFI 240

Query: 211 PDPKIFGDK--AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           PD   FG +       A + +     A  +  VK   +  +                  G
Sbjct: 241 PDLDKFGMEKLDDDIVALMCRRAYDIAGSTKGVKVFLNGKRIPV--------------LG 286

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGG 328
            K Y+   L++R+  + E      E+        E A+A  +   +  S+ N+I T +GG
Sbjct: 287 FKEYVDLYLKDRTTDTGEPLKVVYEQ---PHPRWEVAVAVSDRGFQQVSFTNSIATTKGG 343

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            H   +   +   + +  +    K  +++    +       ++  I  P F  QTK  + 
Sbjct: 344 RHVDYVCDGIVEKVIENVKKQTKKTGMNVRPFQVKNHLWLFINCLIENPTFDSQTKENMT 403

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR 448
                   +  L D F   +++       +L W+  +++   +  K+    + + ++ + 
Sbjct: 404 LQPKSFGSKCTLSDKFFSQVLK-CGVLESVLSWLQYKAQA--QLDKKCHSTKHSKLKGVP 460

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSE 505
                 +     +H   L + EGDSA   A    +   R    V PL+GK+LNV  A  +
Sbjct: 461 KLEDANEAGTKNSHRCTLILTEGDSAKSLAVAGFSVVGRDFYGVFPLKGKVLNVREANYK 520

Query: 506 KIRNNQQIMDLVQALGCRTRSQY----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
           +I  N +I +L++ +G + + +Y    +   LRY +V+IM D D DG+HI  L++ FF+ 
Sbjct: 521 QIMENAEINNLIKIIGLQYKCKYDTSEQMNSLRYGRVMIMADQDQDGSHIKGLVINFFHH 580

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
              +L+ +  +     P+ + T+G + +         +   E         ++  +KGLG
Sbjct: 581 NWPNLLRRNFIEEFITPIVKATKGREELQFFSIPQYFQWRAETA--NWKAWKVKYYKGLG 638

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
              A + KE   + ++  +  V   +        + + +K    + ++R  ++
Sbjct: 639 TSTAKEAKEYFTNMDRHRI--VFKYEGPTDDDAIELAFSK---KRVEDRKNWL 686


>gi|18369810|dbj|BAB84100.1| DNA topoisomerase II [Aspergillus flavus]
          Length = 1219

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 151/703 (21%), Positives = 271/703 (38%), Gaps = 71/703 (10%)

Query: 20  SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD--------- 70
           ++   +S          + + S+ Y       L  LE +  RP  YIG  +         
Sbjct: 2   ADVENESFTNEADAGPKDSNVSEKY-----HKLTQLEHIIKRPDTYIGSIERTSQQMWVY 56

Query: 71  --------------EKALHHLFSEVIDNAMDEVIAG-YANLIEVSLD-GNGFLTVVDNGR 114
                            L+ +F E++ NA D        + I V++    G ++V +NGR
Sbjct: 57  STESDGMEFREVSYVPGLYKIFDEIVVNAADNKQNDANMDEIRVTISRETGEISVWNNGR 116

Query: 115 GIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDEL--HVT 172
           GIP+E H K       E+I   L     +D++  +++GG +G G  + N  S E      
Sbjct: 117 GIPIEMHAK-EKIYVPELIFGHLLTSSNYDDTQQKVTGGRNGFGAKLCNVFSTEFSIETQ 175

Query: 173 VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP-KIFGDKAGFDAARLLKMT 231
            +RQ   + Q ++  +      K    +    T++TF+PD  K   D    D   L+K  
Sbjct: 176 DSRQKKKYKQTWTSNMTKMGKAKITDAKGDDYTKVTFKPDYAKFGMDGMDNDFEALVKRR 235

Query: 232 QSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGK 291
                 + +V    +  +     +        Y     K   + + ++      EI T  
Sbjct: 236 VYDLAGTAKVAVKLNGSRVPVRNFKK------YMEMYTKAIRRERGDDGPAAKDEIITCS 289

Query: 292 TEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN 351
                      E   A  + + +  S+ N+I T  GGTH + +   +   +       +N
Sbjct: 290 ------PDPRWEVGFAVSDGSFQQVSFVNSIATTSGGTHVNYIADQICSKLAD-QVKKKN 342

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   ++    +       ++  I  P F  QTK +L +  +Q   +  L + F   +++ 
Sbjct: 343 KNGATLKPAQIRNHIFIFVNAQIVNPAFTSQTKEQLTTKSSQFGSKCVLEEDFYKKILK- 401

Query: 412 PIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
               T ++  ++  ++++  +  ++    + A                  H   L + EG
Sbjct: 402 ----TDVMSNILHFAQQKADQMLKKTDGGRRARMNNPKLTDANKAGTKDGHHCTLILTEG 457

Query: 472 DSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528
           DSA G A   R         V PLRGK+LNV  A  E+I  N +I ++   LG + + +Y
Sbjct: 458 DSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDATFEQISKNAEIQNIKNFLGLQHKKEY 517

Query: 529 REED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK-HLFLISPPLFRITQG- 585
            +   LRY  ++IMTD D DG+HI  LL+ F   +   L+     L     P+ ++ +G 
Sbjct: 518 TDTRGLRYGHLMIMTDQDHDGSHIKGLLINFLQAQFPSLLRIPEFLIEFITPIIKVWKGD 577

Query: 586 ----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
               TK          +   EE K   +   E   +KGLG       +    D ++    
Sbjct: 578 PKNPTKQRSFFTMPEYEAWKEEHK--HERGWEHKYYKGLGTSTTEDAQVYFRDLDRHLKE 635

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE--RASFID 682
              +    N +   + + +K    KADER +++++    +F+D
Sbjct: 636 FHTMQD--NEVGLIELAFSK---KKADERKEWLRQFKPGTFLD 673


>gi|157167886|ref|XP_001656143.1| DNA topoisomerase/gyrase [Aedes aegypti]
 gi|108871009|gb|EAT35234.1| DNA topoisomerase/gyrase [Aedes aegypti]
          Length = 1300

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 137/698 (19%), Positives = 264/698 (37%), Gaps = 75/698 (10%)

Query: 19  SSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-------- 70
           +++    +     SP    +S    Y   S      LE + +RP  YIG  +        
Sbjct: 9   AAQNGAPTAGTTSSPKIGGKSIEKIYQKKS-----QLEHILLRPDTYIGSVEHLKETMWI 63

Query: 71  ---------------EKALHHLFSEVIDNAMDEVIAG-YANLIEVSLD-GNGFLTVVDNG 113
                             L+ +F E++ NA D        + I++ ++     +++ +NG
Sbjct: 64  YDGELKKMVQREINYVPGLYKIFDEILVNAADNKQRDAKMSAIKIDINQETNTVSIWNNG 123

Query: 114 RGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTV 173
           +GIPV  H K        +I   L     +++   +++GG +G G  + N  S +  V  
Sbjct: 124 QGIPVVMH-KGEKMFVPTMIFGHLLTSSNYNDEEEKVTGGRNGYGAKLCNIFSTKFTVET 182

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG---TRITFRPDPKIFGDK--AGFDAARLL 228
           A +      K + G  +S   + +   +  G   T+ITF PD K F  +         + 
Sbjct: 183 ATKQYKKCFKQTWGDNMSKASEPKIKEDYSGEDYTKITFSPDLKKFKMEKLDNDIVGLMS 242

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           +     A  +  V    +  K   + +              K Y+   ++++        
Sbjct: 243 RRAFDVAASTRGVSVYLNGTKLPVKSF--------------KDYIDLYIKDQQDDIGSQV 288

Query: 289 TGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
               E         E A+   +   +  S+ N+I T +GG H   +   + + + +    
Sbjct: 289 KVVYE---NCNERWEVAVTLSDRGFQQVSFVNSIATTKGGRHVDYITDMIVKQLIE-VLK 344

Query: 349 TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
            +NK  ++I    +       ++  I  P F  QTK  +         +  L + F    
Sbjct: 345 KKNKGGVNIKPFQVKNHMWVFINCLIVNPTFDSQTKENMTLQAKSFGSKCTLSEKFI--- 401

Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELF 467
             N +    ++E V++ ++ + +    +   ++K+ ++ +       D     +    L 
Sbjct: 402 --NNMSKIGIVESVLQWAKFKAQTELNKASGSKKSKVKGVPKLEDANDAGSRNSLNCTLI 459

Query: 468 IVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           + EGDSA   A        R    V PLRGK+LNV  A  ++I  N +I +L++ +G + 
Sbjct: 460 LTEGDSAKTLAVSGLGVVGRDTYGVFPLRGKLLNVREATHKQILENAEINNLIKIIGLQY 519

Query: 525 RSQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           + +Y   D    LRY K++IMTD D DG+HI  LL+ F +    +L+    L     P+ 
Sbjct: 520 KKKYITMDDLKTLRYGKLMIMTDQDQDGSHIKGLLINFIHTNWPELLRLPFLEEFITPIV 579

Query: 581 RITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           + T+   + +        ++   E          I  +KGLG   + + KE   +  +  
Sbjct: 580 KATKKNGEELSFFSLPEFEEWKTETPNAHT--YNIKYYKGLGTSTSKEAKEYFQNMERHR 637

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           +L           +    + +K      D+R +++   
Sbjct: 638 ILF--KYDSTQDDEAITMAFSK---KCVDQRKEWLTSH 670


>gi|291405994|ref|XP_002719184.1| PREDICTED: DNA topoisomerase II, alpha isozyme-like [Oryctolagus
           cuniculus]
          Length = 1181

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 140/694 (20%), Positives = 270/694 (38%), Gaps = 69/694 (9%)

Query: 17  QGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD------ 70
           Q  +E ++ +    +  A    S    Y          LE + +RP  YIG  +      
Sbjct: 7   QPVNENMQMNKIKKNEDAKKRLSIERIYQKK-----TQLEHILLRPDTYIGSVELVTQHM 61

Query: 71  ----------------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDN 112
                              L+ +F E++ NA D        + I V++D  N  +++ +N
Sbjct: 62  WVYDEDVGINYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNN 121

Query: 113 GRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVT 172
           G+GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V 
Sbjct: 122 GKGIPVVEH-KVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 180

Query: 173 V--ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLL 228
                   +F Q +   +  +   + +    +  T ITF+PD   F  +       A ++
Sbjct: 181 TASREYKKMFKQTWMDNMGRAGEMELKSFSGEDYTCITFQPDLSKFKMQSLDKDIVALMV 240

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           +     A  +  VK   + +K   +              G ++Y+   L+++   +    
Sbjct: 241 RRAYDIAGSTKDVKVFLNGNKLPVK--------------GFRSYVDMYLKDKVDETGNPL 286

Query: 289 TGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
               E+        E  +   E+  +  S+ N+I T +GG H   +   +   +      
Sbjct: 287 KVIHEQVNH---RWEVCLTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVAKLVD-VVK 342

Query: 349 TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
            +NK  +++ +  +       ++  I  P F  QTK  +            L + F    
Sbjct: 343 KKNKGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQAKSFGSTCQLSEKFIKAA 402

Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFI 468
           +        +L WV  +++  ++  K+    +   I+ +       D     +    L +
Sbjct: 403 IG-CGIVESILNWVKFKAQ--VQLNKKCSAVKHNRIKGIPKLDDANDAGSRNSAECTLIL 459

Query: 469 VEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
            EGDSA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +G + +
Sbjct: 460 TEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYK 519

Query: 526 SQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581
             Y +ED    LRY K++IMTD D DG+HI  LL+ F +     L+  + L     P+ +
Sbjct: 520 KNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVK 579

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           +++  + +  +     ++       H   K ++  +KGLG   + + KE   D  +   +
Sbjct: 580 VSRNKQEMAFYSLPEFEEWKSSTPNH--KKWKVKYYKGLGTSTSKEAKEYFADMKRHR-I 636

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675
           + + +           + +K    + D+R +++ 
Sbjct: 637 QFKYS-GPEDDAAISLAFSK---KQIDDRKEWLT 666


>gi|328791048|ref|XP_001119985.2| PREDICTED: DNA topoisomerase 2 [Apis mellifera]
          Length = 1447

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 140/693 (20%), Positives = 264/693 (38%), Gaps = 74/693 (10%)

Query: 23  LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE----------- 71
                   +  +   ++    Y   S      LE + +RP  YIG  +            
Sbjct: 2   STAIENGSNDNSAKKKTIEGIYQKKS-----QLEHILLRPDTYIGSVEPVTEIMWVYDKE 56

Query: 72  ------------KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIP 117
                         L+ +F E++ NA D        + I++ ++  N  ++V +NG+GIP
Sbjct: 57  KESMTQKEIKYVPGLYKIFDEILVNAADNKQRDPKMDTIKIEINAENNIISVWNNGKGIP 116

Query: 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTV--AR 175
           V  H K  N     +I   L     +D+   +++GG +G G  + N  S    V      
Sbjct: 117 VVIH-KEENMYVPTMIFGHLLTSSNYDDEEEKVTGGRNGYGAKLCNIFSHRFTVETASKE 175

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLLKMTQS 233
                 Q +S  +  +   + +    +  T++ F PD   F  +       A + +    
Sbjct: 176 YKKCLKQTWSNNMGSASEPRIKDFSGEDFTKVIFSPDLSKFKMQSLDDDIIALMSRRAYD 235

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            A  +  VK   +  K   + +              K Y+   ++ R            E
Sbjct: 236 IAASTRGVKVFLNGTKIPVKNF--------------KDYVDFYIKGREDDVGNPLKIVYE 281

Query: 294 KKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR 353
                    E AIA  ++  +  S+ N+I T +GG H   +   + + + +     +NK 
Sbjct: 282 ---NCGPRWEVAIALSDKGFQQMSFVNSIATTKGGRHVDHVTELIVKQLTE-TLKKKNKA 337

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
            ++I    +       ++  I  P F  QTK  +         +  L + F   + +   
Sbjct: 338 GVTIKPFQIKNHLWIFINCLINNPTFDSQTKENMTLQPKSFGSKCTLSEKFITSVTK--- 394

Query: 414 EATKLLEWVIERSEERLRRRKQR--EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
               ++E V+  ++ +   + Q+    +++  ++ +       D   N +    L + EG
Sbjct: 395 --IGIVEAVLTWAKFKADSQLQKLGPKSKQRKLQGIPKLEDANDAGTNKSLECTLILTEG 452

Query: 472 DSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528
           DSA   A        R    + PLRGKILNV  A  ++I  N +I +L++ LG + + +Y
Sbjct: 453 DSAKTMAVSGLAAIGRDKYGIFPLRGKILNVREATHKQILENAEINNLIKILGLQYKKKY 512

Query: 529 REED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ 584
              +    LRY K++IMTD D DG+HI  LL+ F +     L++   +     P+ + T+
Sbjct: 513 ETREDLKTLRYGKMMIMTDQDQDGSHIKGLLINFIHHNWPSLLKLNFVEEFITPIVKATK 572

Query: 585 GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644
           G + +         K   E +       +I  +KGLG   A + KE   +  +   +R  
Sbjct: 573 GNQVLSFFSMPEFNKWKSETENFHT--YKIKYYKGLGTSTAKEAKEYFENMTRHR-IRFR 629

Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
            + D +  ++   + +K      D+R  ++   
Sbjct: 630 YDGDQDD-QNIIMAFSK---KCVDQRKDWLMNH 658


>gi|270295220|ref|ZP_06201421.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274467|gb|EFA20328.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 644

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 190/698 (27%), Positives = 314/698 (44%), Gaps = 84/698 (12%)

Query: 18  GSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEK 72
             +  +    E  D+    +  +S  Y   +IR L+ +E +R+R GMYIG       ++ 
Sbjct: 2   EDNNNMTLPLEEADNNITESPVSSVEYTDDNIRHLDDMEHIRVRSGMYIGRLGDGSQNDD 61

Query: 73  ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
            ++ L  EV+DN++DE   G    IEV+++ +  ++V D GRGIP            +E 
Sbjct: 62  GIYVLLKEVMDNSIDEFKMGAGKRIEVTIEDSLRVSVRDYGRGIPQGK--------LVEA 113

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
           + + L+ GGK+D+  ++ S GL+GVGI  VNALS    V   R   +    F +G     
Sbjct: 114 V-SKLNTGGKYDSKAFKKSVGLNGVGIKAVNALSSRFEVRSYRDGKVRIAIFEKG--TLL 170

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
            +  E    + GT I F PD  +F +   F    +  + ++  YL+  +   ++  + ++
Sbjct: 171 SDVTEDSTEESGTYIFFEPDATLFLNY-SFQNQFVETLLRNYTYLNTGLTFIYNGQRIVS 229

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
                   ++     GL   +  K E+                      +E A     + 
Sbjct: 230 RHGLEDLLKDNMTSEGLYDIIHLKGED----------------------IEIAFTHTNQY 267

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILS 371
             E  S+ N   T +GGTH++ L+  + R IK++          +    D+    V  ++
Sbjct: 268 GEEYYSFVNGQHTTQGGTHQTALKEHIARTIKEFYN-------KNQEYADIRNGLVAAIA 320

Query: 372 VFIREPEFAGQTKTKLVSLDA---------------QRTVENALRDPFDHYLVQNPIEAT 416
           + + EP F  QTKTKL S +                 + V + ++   D+YL +NP+ A 
Sbjct: 321 IDVEEPMFESQTKTKLGSNNMWPAAPQEHKPAGPTVNKYVGDFIKTEVDNYLHKNPLVAE 380

Query: 417 KLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN--------IAHGTELFI 468
            +L+ + +  +ER       ++ R+ A +      KL DC  +            + +FI
Sbjct: 381 VMLQKIQDSEKERKAIAGVTKLARERAKKANLHNRKLRDCRYHLSDGKGKDQETESCIFI 440

Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528
            EGDSA GS  ++R+ + QAV  LRGK LN      + +  N++   L  AL      + 
Sbjct: 441 TEGDSASGSITKSRDVNTQAVFSLRGKPLNSYGLTKKVVYENEEFNLLQAALNIEDGIET 500

Query: 529 REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKS 588
               LRY KVI+ TDADVDG HI  L++TFF Q   DLI++ H++++  PLFR+    K+
Sbjct: 501 ----LRYNKVIVATDADVDGMHIRLLIITFFLQFFPDLIKKGHVYILQTPLFRVRNKKKT 556

Query: 589 VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648
            Y + EE + K +EE   +     EI+RFKGLGE+   + K          L +V + K 
Sbjct: 557 SYCYTEEERVKAIEELGPN----PEITRFKGLGEISPDEFKHFIG--KDMRLEQVSLRK- 609

Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
                  ++ +   MG    ER  FI       +D+ +
Sbjct: 610 ---TDLVKELLEFYMGKNTMERQNFIINNLVIEEDLAS 644


>gi|7388329|sp|Q9Y8G8|TOP2_PENCH RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|5441259|dbj|BAA82356.1| type II DNA topoisomerase [Aspergillus terreus]
          Length = 1587

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 157/743 (21%), Positives = 282/743 (37%), Gaps = 89/743 (11%)

Query: 1   MTDDS---------IDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQ-----SASDNYD- 45
           M+D             + S  PP+ Q  +   KK G  P +             S+N D 
Sbjct: 1   MSDADPFDMSDDDDNSVLSHTPPKKQKKAPTTKKGGSKPLADVENESFMDGIEESNNQDK 60

Query: 46  ----ASSIRILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLF 78
               +   + L  LE +  RP  Y+G T+                          L+ +F
Sbjct: 61  DTNVSEKYQKLTQLEHIIKRPDTYVGSTERTTQHMWVYSSESEGMEYREVSYVPGLYKIF 120

Query: 79  SEVIDNAMDEVIAG-YANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTT 136
            E++ NA D        + I V++D   G ++V +NGRGIP+E H K       E+I   
Sbjct: 121 DEIVVNAADNKQNDKNMDEIRVTIDRESGEISVWNNGRGIPIEMHSK-EKMYVPELIFGH 179

Query: 137 LHAGGKFDNSTYEISGGLHGVGISVVNALSDEL--HVTVARQNTIFSQKFSRGIPLSPLE 194
           L     +D++  +++GG +G G  + N  S E       +RQ   + Q ++  +      
Sbjct: 180 LLTSSNYDDTQMKVTGGRNGFGAKLCNVFSTEFTIETQDSRQKKKYKQTWTENMTKMGKA 239

Query: 195 KKEKVRNKRGTRITFRPDP-KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           K    +    T++TF+PD  K        D   L+K        + +V    +  +    
Sbjct: 240 KITDAKGADYTKVTFKPDYAKFGMTGMDDDFEALVKRRVYDLAGTAKVAVKLNGSRIPI- 298

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP 313
                   + Y     K   + + +      +EI T             E   A  +   
Sbjct: 299 -----RNFKMYMEMYTKAIRRERGDMGPAGKNEIITCS------PDPRWEVGFAVSDGAF 347

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVF 373
           +  S+ N+I    GGTH + +   +   + +     +NK   ++    +       ++  
Sbjct: 348 QQVSFVNSIAITSGGTHVNYIADQICSKLAE-QVKKKNKNGATLKPAQIRNHIFIFVNAL 406

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           I  P F  QTK +L +  +Q   +  L + F   +++     T+++  ++  ++++  + 
Sbjct: 407 IVNPAFTSQTKEQLTTKQSQFGSKCVLEEDFYKKILK-----TEVMTNILHFAQQKADQM 461

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVL 490
            ++    + +                  H   L + EGDSA G A   R         V 
Sbjct: 462 LKKTDGGRRSRMNNPKLTDANKAGTKEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVF 521

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGA 549
           PLRGK+LNV  A  ++I  NQ+I ++   +G + + +Y +   LRY  ++I TD D DG+
Sbjct: 522 PLRGKLLNVRDASFDQIAKNQEIQNIKNFIGLQHKKEYTDTRGLRYGHLMITTDQDHDGS 581

Query: 550 HIASLLLTFFYQEMYDLIEQK-HLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEE 603
           HI  LL+ F   +   L++    L     P+ ++ +G     TK          +   EE
Sbjct: 582 HIKGLLINFLQAQFPSLLKIPEFLIEFITPIVKVWKGDPKNPTKQRSFFTMPEYEAWKEE 641

Query: 604 FKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLM 663
                +   E   +KGLG       +    D ++       +    N ++  + + +K  
Sbjct: 642 HG--HERGWEHKYYKGLGTSTTEDAQIYFRDLDRHLKEFHTMQD--NEVELIELAFSK-- 695

Query: 664 GTKADERF----KFIQERASFID 682
             KADER     +F     +F+D
Sbjct: 696 -KKADERKGNVRQF--RPGTFLD 715


>gi|315047873|ref|XP_003173311.1| hypothetical protein MGYG_03483 [Arthroderma gypseum CBS 118893]
 gi|311341278|gb|EFR00481.1| hypothetical protein MGYG_03483 [Arthroderma gypseum CBS 118893]
          Length = 1672

 Score =  388 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 145/717 (20%), Positives = 278/717 (38%), Gaps = 71/717 (9%)

Query: 11  TLPPQSQGSSEKLKKSGEIP-----DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMY 65
           + PP +    +   K          ++ +F  ++A     +   + +  LE +  RP  Y
Sbjct: 87  STPPNASKKPKAAPKKAASKPLASVENGSFTTETAEGGGSSDKYQKITQLEHILKRPDTY 146

Query: 66  IGGTD-----------------------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSL 101
           IG  +                          L+ +F E++ NA D        + I V+L
Sbjct: 147 IGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAADNKQNDPSMSEIRVTL 206

Query: 102 DGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           D   G ++V +NGRGIPVE H K  +    E+I   L     +++   +++GG +G G  
Sbjct: 207 DKEAGEISVWNNGRGIPVEIHKK-EHIYIPELIFGHLLTSSNYNDMQEKVTGGRNGYGAK 265

Query: 161 VVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP-KIFG 217
           + N  S+E  V  A       F   +++ +      K  + +    T++TF+PD  K   
Sbjct: 266 LCNIFSNEFTVETADSSNKKKFKLTWTKNMSTMGKAKITESKGDDYTKVTFKPDFAKFGM 325

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           D    D   L+K        +       +  +   + +        Y     K     + 
Sbjct: 326 DGMDDDFEALVKRRVYDMAGTCGTTVKLNGTRIPVKSFKK------YMEMYTKAIKTERG 379

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337
           E+ +   ++I T   ++        E      + + +  S+ N+I T  GGTH + +   
Sbjct: 380 EDPTSDKNDIITESPDR------RWEIGFTVSDGSFQQVSFVNSIATTSGGTHVNYISDQ 433

Query: 338 LTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           +   +   A   +NK   ++ +  +       ++  I  P F  QTK +L +  +Q   +
Sbjct: 434 ICNKLAD-ALKKKNKTGATLKAAQIKNHIFLFVNSQIVNPAFTSQTKEQLTTRSSQFGSK 492

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             + D F   +++  +        ++  +E++  +  ++    + +              
Sbjct: 493 CIVSDDFLKKVMKTRVMDD-----ILHFAEKKADQILKKTDGNRRSRMNNPKLTDANKAG 547

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
               H   L + EGDSA G A   R         V PLRGK+LNV  A  ++I  N +I 
Sbjct: 548 TKEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQISKNAEIQ 607

Query: 515 DLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ-KHL 572
           ++   +G + + +Y +   LRY  ++IMTD D DG+HI  LL+ +       L++    L
Sbjct: 608 NIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPTLLKIPGFL 667

Query: 573 FLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
                P+ ++ +G     T S         ++  E        K +   +KGLG      
Sbjct: 668 IEFITPIVKVWKGDPKNPTHSKSFFTLPEYEEWKEAHA--HDKKWQKKYYKGLGTSSTED 725

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE--RASFID 682
            +    D ++       +       +  + + +K    KADER +++++    +++D
Sbjct: 726 AQVYFQDLDRHLKQFHTLQD--KEAELIELAFSK---KKADERKEWLRQFKPGTYLD 777


>gi|297701283|ref|XP_002827646.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 2-alpha-like
           [Pongo abelii]
          Length = 1532

 Score =  388 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 137/696 (19%), Positives = 267/696 (38%), Gaps = 70/696 (10%)

Query: 17  QGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD------ 70
           Q  +E ++ +    +  A    S    Y          LE + +RP  YIG  +      
Sbjct: 7   QPVNENMQVNKIKKNEDAKKRLSVERIYQKK-----TQLEHILLRPDTYIGSVELVTQQM 61

Query: 71  ----------------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDN 112
                              L+ +F E++ NA D        + I V++D  N  +++ +N
Sbjct: 62  WVYDEDVGINYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNN 121

Query: 113 GRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVT 172
           G+GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V 
Sbjct: 122 GKGIPVVEH-KVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 180

Query: 173 V--ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLL 228
                   +F Q +   +  +   + +    +  T ITF+PD   F  +       A ++
Sbjct: 181 TASREYKKMFKQTWMDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMV 240

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           +     A  +  VK   + +K   +              G ++Y+   L+++   +    
Sbjct: 241 RRAYDIAGSTKDVKVFLNGNKLPVK--------------GFRSYVDMYLKDKLDETGNSL 286

Query: 289 TGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
               E+        E  +   E+  +  S+ N+I T +GG H   +   +   +      
Sbjct: 287 KVIHEQVNH---RWEVCLTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLVD-VVK 342

Query: 349 TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
            +NK  +++ +  +       ++  I  P F  QTK  +            L + F    
Sbjct: 343 KKNKGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQPKSFGSTCQLSEKFIKAA 402

Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFI 468
           +        +L WV  +++  ++  K+    +   I+ +       D     +    L +
Sbjct: 403 IG-CGIVESILNWVKFKAQ--VQLNKKCSAVKHNRIKGIPKLDDANDAGSRNSTECTLIL 459

Query: 469 VEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
            EGDSA   A        R    V PLRGKILNV  A  ++I  N +I ++++ +     
Sbjct: 460 TEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENAEINNIIKIIVGLQY 519

Query: 526 SQYREED-----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
            +  E++     LRY K++IMTD D DG+HI  LL+ F +     L+  + L     P+ 
Sbjct: 520 KKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIV 579

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           ++++  + +  +     ++       H   K ++  +KGLG   + + KE   D  +   
Sbjct: 580 KVSKNKQEMAFYSLPEFEEWKSSTPNH--KKWKVKYYKGLGTSTSKEAKEYFADMKRHR- 636

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           ++ + +           + +K    + D+R +++  
Sbjct: 637 IQFKYS-GPEDDAAISLAFSK---KQIDDRKEWLTN 668


>gi|223634721|sp|Q01879|TOP2_PICGU RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|190347620|gb|EDK39928.2| hypothetical protein PGUG_04026 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1400

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 162/730 (22%), Positives = 285/730 (39%), Gaps = 74/730 (10%)

Query: 2   TDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMR 61
           +D S D   +   +S+G       +       A A   ASD Y     + L  LE +  R
Sbjct: 17  SDASSDFTPSSSVKSKGKVPLRDSTNTTAQPSAPATGDASDQY-----QKLSQLEHILKR 71

Query: 62  PGMYIGGTD-----------------------EKALHHLFSEVIDNAMDEVIAGY-ANLI 97
           P  YIG  +                          L+ +F E++ NA D  I       I
Sbjct: 72  PDTYIGSVEKTGVEMWSFDAATESMIYKEVHIVPGLYKIFDEILVNAADNKIRDPSMRNI 131

Query: 98  EVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           +V++D  N  ++V+++G+GIP+E H K       E+I   L     +D+   +++GG +G
Sbjct: 132 KVNIDAENNTISVMNDGKGIPIEIHKK-EKIYIPELIFGNLLTSSNYDDDEKKVTGGRNG 190

Query: 157 VGISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEK-VRNKRGTRITFRPDP 213
            G  + N  S E  +  A    + ++ Q ++  +      K  K    K  T++TF+PD 
Sbjct: 191 YGAKLCNIFSTEFVLETADLNTSQVYKQTWTNNMANLTKPKITKLKSKKEYTKVTFKPDL 250

Query: 214 KIFGDKA--GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             F  +       + L +                +  K    +      E +      ++
Sbjct: 251 SKFHMEMLDDDILSVLRRRVYDLCGTVKDCNIYLNDKKLSI-RNFKSYVEMYVNAIRERS 309

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHE 331
                 E  +   S I               E A A  + +    S+ N+I T  GGTH 
Sbjct: 310 PDPVAPEGETRNYSTIVH------EVFNDRWEVAFAVSDGSFNQVSFVNSIATTSGGTHV 363

Query: 332 SGLRVA-LTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
             +    +T+ I    +  + K+ ++I   ++  +    ++  I  P F  QTK +L + 
Sbjct: 364 KYVSDQIITKLIDALTKKEKGKKKLNIKPQEVRNNMFVFINCLIENPAFTSQTKEQLTTR 423

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
                V      P +  ++ +   A  L   + ++    +   + +E+++    RK R+ 
Sbjct: 424 -----VAQFGGKPSEKIVISDQFIAKILKTSIADKIRTIVNANEDKEMSKADGSRKSRIK 478

Query: 451 GKLADCSQNIAHGTE-----LFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASA 502
            ++     N A   E     L + EGDSA   A        R      PLRGK+LNV  A
Sbjct: 479 NQVKLVDANKAGTKEGYKCTLILTEGDSAMPLAVAGLTVVGRDYYGCFPLRGKLLNVREA 538

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFF 559
             E++  N +I  + Q +G + + +Y  E+   LRY  ++IMTD D DG+HI  L++ F 
Sbjct: 539 SIEQVSKNAEINSIKQIMGLQHKKRYTPENIKSLRYGHIMIMTDQDQDGSHIKGLIINFL 598

Query: 560 YQEMYDLIEQ-KHLFLISPPLFRIT---QGT-KSVYAHDEEHKQKILEEFKKHGKGKIEI 614
                 L+E    L     P+ ++T   +G  + +  ++    +K  E        K + 
Sbjct: 599 ETSFPGLLEIPGFLLEFITPIVKVTITGRGNHRVIPFYNMPEFEKWRETEGTTC--KWKH 656

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
             FKGLG  L S+ +E     ++       +       +    + +K    KADER  ++
Sbjct: 657 KYFKGLGTSLESEGREYFAALDRHMKSFHALQDG--DSQYIDMAFSK---KKADERKDWL 711

Query: 675 Q--ERASFID 682
           Q     + +D
Sbjct: 712 QAFRPGTHLD 721


>gi|212531355|ref|XP_002145834.1| DNA topoisomerase II [Penicillium marneffei ATCC 18224]
 gi|210071198|gb|EEA25287.1| DNA topoisomerase II [Penicillium marneffei ATCC 18224]
          Length = 1696

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 149/692 (21%), Positives = 277/692 (40%), Gaps = 71/692 (10%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-------------------- 70
            S A     A D Y     + L   E +  RP  YIG  +                    
Sbjct: 119 ASEAPTQTGAGDKY-----QKLTQYEHIIKRPDTYIGSIEKTTQQMWVYDSATESMAFRE 173

Query: 71  ---EKALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFP 125
                 L+ +F E++ NA D        + I +++D   G ++V +NGRGIP+E H K  
Sbjct: 174 VTFVPGLYKIFDEIVVNAADNKQNDEKMDEIRITIDRESGVISVWNNGRGIPIEIHSK-E 232

Query: 126 NKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDEL--HVTVARQNTIFSQK 183
                E+I   L     +D+   +++GG +G G  + N  S E       +RQ   + Q 
Sbjct: 233 KIYVPELIFGHLLTSSNYDDGQMKVTGGRNGFGAKLCNVFSTEFSIETCDSRQGKKYHQT 292

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK-AGFDAARLLKMTQSKAYLSGRVK 242
           ++  +      K    ++   T++TF+PD + FG      D   L+K        + +V 
Sbjct: 293 WTDNMSKVGKAKITSSKSDDYTKVTFKPDYQKFGMDGMDDDFEALVKRRVYDLAGTAKVA 352

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
              +  +               F   ++ Y +   + R   +    +         R  V
Sbjct: 353 VKLNGSRIPVRN----------FKKYMEMYTKAIKKERGEEAVNDKSEIVTASPDPRWEV 402

Query: 303 EWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDL 362
            +A++  + + +  S+ N+I T  GG+H + +   +   + + A   +NK+  S+ +  +
Sbjct: 403 GFAVS--DGSFQQVSFVNSIATTSGGSHVNYIADQICNRLAE-AVKKKNKQGASLKASQI 459

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
                  ++  I  P F  QTK +L +  +Q   +  L D F   +++     T+++  +
Sbjct: 460 RNHIFIFVNALIVNPAFTSQTKEQLTTKPSQFGSKCILDDDFYKKVLK-----TEVMTNI 514

Query: 423 IERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           +  +E++  +  ++    + +                  H   L + EGDSA G A   R
Sbjct: 515 LHFAEKKADQLLKKTDGGRRSRMNNPKLTDANKAGTKDGHHCTLILTEGDSAKGLAMAGR 574

Query: 483 N---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKV 538
                    V PLRGK+LNV  A  ++I  N +I ++   +G + + +Y +   LRY  +
Sbjct: 575 AVVGPDLFGVFPLRGKLLNVRDASVDQISKNAEIQNIKSFIGLQHKKEYTDTRGLRYGHL 634

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQK-HLFLISPPLFRITQG-----TKSVYAH 592
           +IMTD D DG+HI  LL+ F   +   L++    L     P+ ++ +G     TKS    
Sbjct: 635 MIMTDQDHDGSHIKGLLINFLQVQFPSLLKIPEFLIEFITPIIKVWKGDPKNPTKSKSFF 694

Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652
                ++  EE         +   +KGLG       +    D ++       +    +  
Sbjct: 695 TMPEYEQWKEE--NKNDLSWQHKYYKGLGTSTTEDAQIYFRDLDRHLKEFHTMQD--HEA 750

Query: 653 KDTQDSINKLMGTKADERFKFIQER--ASFID 682
           +    + +K    KADER +++++    +F+D
Sbjct: 751 QLIDLAFSK---KKADERKEWLRQYKPGTFLD 779


>gi|242772741|ref|XP_002478098.1| DNA topoisomerase II [Talaromyces stipitatus ATCC 10500]
 gi|218721717|gb|EED21135.1| DNA topoisomerase II [Talaromyces stipitatus ATCC 10500]
          Length = 1678

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 153/697 (21%), Positives = 279/697 (40%), Gaps = 71/697 (10%)

Query: 26  SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGG----------------- 68
           + ++  S A     A+D Y     + L  LE +  RP  YIG                  
Sbjct: 114 ADDLDASEAPTQTGAADKY-----QKLTQLEHIIKRPDTYIGSIEKTTQQMWVYDSATES 168

Query: 69  ------TDEKALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN-GFLTVVDNGRGIPVEN 120
                 T    L+ +F E++ NA D        + I +++D   G ++V +NGRGIP+E 
Sbjct: 169 MEFREVTYVPGLYKIFDEIVVNAADNKQNDENMDEIRITVDRESGVISVWNNGRGIPIEV 228

Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDEL--HVTVARQNT 178
           H K       E+I   L     +D+   +++GG +G G  + N  S E       +RQ  
Sbjct: 229 HSK-EQIFVPELIFGHLLTSSNYDDGQMKVTGGRNGFGAKLCNVFSTEFTIETCDSRQGK 287

Query: 179 IFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF-GDKAGFDAARLLKMTQSKAYL 237
            + Q ++  +      K    +    T++TF+PD K F  +    D   L+K        
Sbjct: 288 KYQQTWTENMSKMGKAKITASKVDDYTKVTFKPDYKKFGMEGMDDDFEALVKRRVYDLAG 347

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           + +V    +  +     +        Y     K   + + E  +   SEI T        
Sbjct: 348 TAKVAVKLNGSRIPIRNFKK------YMEMYTKAIKKERGEEATNDKSEIVTAS------ 395

Query: 298 HRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI 357
                E      + + +  S+ N+I T  GGTH + +   +   + + A   +NK+  ++
Sbjct: 396 PDPRWEVGFTVSDGSFQQVSFVNSIATTSGGTHVNYIADQICNRLAE-AVKKKNKQGATL 454

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
            +  +       ++  I  P F  QTK +L +  +Q   +  L + F   +++     T+
Sbjct: 455 KASQIRNHIFIFVNALIVNPAFTSQTKEQLTTKPSQFGSKCILDEDFYKKVLK-----TE 509

Query: 418 LLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           ++  ++  +E++  +  ++    + +                  H   L + EGDSA G 
Sbjct: 510 VMTNILHFAEKKADQILKKTDGGRRSRMNNPKLTDANKAGTKDGHHCTLILTEGDSAKGL 569

Query: 478 AKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-L 533
           A   R         V PLRGK+LNV  A  ++I  N +I ++   +G + + +Y +   L
Sbjct: 570 AMAGRAVVGPDLFGVFPLRGKLLNVRDASIDQISKNAEIQNIKSFIGLQHKKEYTDTRGL 629

Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK-HLFLISPPLFRITQG-----TK 587
           RY  ++IMTD D DG+HI  LL+ F   +   L++    L     P+ ++ +G     TK
Sbjct: 630 RYGHLMIMTDQDHDGSHIKGLLINFLQVQFPSLLKIPEFLIEFITPIVKVWKGDPKNPTK 689

Query: 588 SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINK 647
           S         ++  EE K       +   +KGLG       +    D ++       +  
Sbjct: 690 SKSFFTMPEYEQWKEEHKYD--RTWQHKYYKGLGTSTTEDAQIYFRDLDRHLKEFHTMQD 747

Query: 648 DLNSLKDTQDSINKLMGTKADERFKFIQER--ASFID 682
             +  +    + +K    KADER +++++    +F+D
Sbjct: 748 --HEAQLIDLAFSK---KKADERKEWLRQYKPGTFLD 779


>gi|195397652|ref|XP_002057442.1| GJ18099 [Drosophila virilis]
 gi|194141096|gb|EDW57515.1| GJ18099 [Drosophila virilis]
          Length = 1445

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 140/689 (20%), Positives = 258/689 (37%), Gaps = 73/689 (10%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-------------------- 70
           ++      S    Y   S      LE + +RP  YIG  +                    
Sbjct: 2   ENGKGKGMSIEQMYQKKS-----QLEHILLRPDSYIGSVEFTKELMWVHDVEKNRMVQRE 56

Query: 71  ---EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFP 125
                 L+ +F E++ NA D        N I+V +D     +++ +NG+GIPV  H K  
Sbjct: 57  ISFVPGLYKIFDEILVNAADNKQRDKTMNTIKVDIDPERNLVSIWNNGQGIPVTMH-KDE 115

Query: 126 NKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTV--ARQNTIFSQK 183
           N     +I   L     +++   +++GG +G G  + N  S+   V     +    F Q 
Sbjct: 116 NMYVPTMIFGHLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSNSFTVETATRKYRKCFKQT 175

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLLKMTQSKAYLSGRV 241
           +   +  +             TRITF PD   F  +       A + +     A  +  V
Sbjct: 176 WGNNMGKAGDPVISDFNGTDYTRITFSPDLTKFKMESLDNDIVALMSRRAYDVAASTKGV 235

Query: 242 KTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
               +  K   +              G K Y+   ++N    + +      E  G     
Sbjct: 236 SVFLNGTKVPVK--------------GFKDYIDLFIKNTDDDAGQPMKVVYEACGD---R 278

Query: 302 VEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDD 361
            E A    +   +  S+ N+I T +GG H   +   + + + +     +NK  ISI    
Sbjct: 279 WEIACCPSDRGFQQVSFVNSIATTKGGRHVDHVVDNVIKQLIE-VLKKKNKNGISIKPFQ 337

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
           +       ++  I  P F  QTK  +         +  L + F        +    ++E 
Sbjct: 338 VRNHLWIFVNCLIENPTFDSQTKENMTLQAKSFGSKCVLSEKFIS-----NVSKAGIVES 392

Query: 422 VIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD-CSQNIAHGTELFIVEGDSAGGSAKQ 480
           V+  ++ + +    +   +K++  K     + A+      +    L + EGDSA   A  
Sbjct: 393 VLAWAKFKAQNDIAKTGGKKSSKIKGIPKLEDANEAGTKNSIMCTLILTEGDSAKSLAVS 452

Query: 481 A---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED----L 533
                 R+   V PLRGK+LNV  A  +++  N +I +L + +G + + +Y   D    L
Sbjct: 453 GLGVIGRNYYGVFPLRGKLLNVREATFKQLTENAEINNLCKIIGLQYKKKYLTTDDLKTL 512

Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHD 593
           RY KV+IMTD D DG+HI  LL+ F +    +L+    L     P+ + ++  + +  + 
Sbjct: 513 RYGKVMIMTDQDQDGSHIKGLLINFIHTNWPELLRLPFLEEFITPIVKASKKNEEISFYS 572

Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
               ++   +   H      I  +KGLG   + + KE   D ++  +L  + +  ++   
Sbjct: 573 LPEFEEWKMDTPNHHT--YNIKYYKGLGTSTSKEAKEYFQDMDRHRIL-FKYDGQVDD-- 627

Query: 654 DTQDSINKLMGTKADERFKFIQERASFID 682
              + +        + R  ++      + 
Sbjct: 628 --DNIVMAFAKKHVESRKTWLTNHMDEVK 654


>gi|284037454|ref|YP_003387384.1| DNA topoisomerase type IIsubunit alpha B region 2 domain protein
           [Spirosoma linguale DSM 74]
 gi|283816747|gb|ADB38585.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Spirosoma linguale DSM 74]
          Length = 632

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 189/669 (28%), Positives = 300/669 (44%), Gaps = 77/669 (11%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            Y+  SIR L+  E +R+RPGMYIG        +  ++ L  E IDN +DE + G+  +I
Sbjct: 10  QYNEDSIRSLDWREHIRLRPGMYIGKLGDGSAADDGIYVLIKETIDNCIDEHVMGFGKVI 69

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           EV +  +  + V D GRGIP+           +E++ + ++ GGK+D+  ++ S GL+GV
Sbjct: 70  EVRV-TDHRVEVRDFGRGIPLGK--------VVEVV-SKINTGGKYDSGAFQKSVGLNGV 119

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G   VNALS    V   R+      +F RG      E  +    + GT I F PD  +F 
Sbjct: 120 GTKAVNALSSYFRVQSFREGKTVWAEFDRGELKQRGE--DATTERNGTLICFEPDDTVFK 177

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY-LQTK 276
               F    L  M  +  YL+  +   ++  K             +    GL        
Sbjct: 178 HFH-FIPQFLENMIWNYCYLNAGLTISFNKQK-------------YLSQNGLLDLLRDKT 223

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            ++   +   I   K          +E A+    +   E  S+ N   T +GGTH + L+
Sbjct: 224 KKDEDSLRYPIIHLKGND-------LEIALTHGNQYGEEYYSFVNGQYTTQGGTHLNALK 276

Query: 336 VALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR- 394
            A+   ++++ +        +    D+  S +  +S+ ++EP F  QTKTKL S +    
Sbjct: 277 EAVVETVRRHFD-------KNYEVSDIRSSIIAAVSIRVQEPVFESQTKTKLGSQNMSPE 329

Query: 395 --------TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
                    V++ +++  D +L  NP     L + + +   ER      +++    A + 
Sbjct: 330 PNAQSVSSFVKDFVKERLDDFLHMNPAVREALKKRIEQSERERKELAGIKKLANDRAKKA 389

Query: 447 LRLPGKLADCSQN-------IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
                KL DC  +         + + LFI EGDSA GS  ++RN  +QAV  LRGK LN 
Sbjct: 390 SLHNKKLRDCRNHLPDLKADDRYQSTLFITEGDSASGSITKSRNVQSQAVFSLRGKPLNC 449

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
                + +  N++   L  AL          E LRY +++I TDADVDG HI  L+LTFF
Sbjct: 450 FGLTKKVVYENEEFNLLQHALDIEDGL----EGLRYNRIVIATDADVDGMHIRLLMLTFF 505

Query: 560 YQEMYDLIEQKHLFLISPPLFRI---TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616
            Q   DL+   HL+++  PLFR+       ++ Y + E+ KQK +++  K  K K+EI+R
Sbjct: 506 LQFFPDLVRNGHLYILETPLFRVRNPKNHKETTYCYSEDEKQKAIDKLTKAAK-KVEITR 564

Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           FKGLGE+   +            L  V + K+          ++  MG    +R +FI +
Sbjct: 565 FKGLGEISPDEFGLFIG--ENMRLEPVIMEKET----SVPKLLSYYMGKNTPDRQRFIID 618

Query: 677 RASFIDDVG 685
                 DV 
Sbjct: 619 NLRIEKDVD 627


>gi|302500519|ref|XP_003012253.1| hypothetical protein ARB_01513 [Arthroderma benhamiae CBS 112371]
 gi|291175810|gb|EFE31613.1| hypothetical protein ARB_01513 [Arthroderma benhamiae CBS 112371]
          Length = 1680

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 140/692 (20%), Positives = 268/692 (38%), Gaps = 64/692 (9%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-------------------- 70
           ++ +FA ++      +   + +  LE +  RP  YIG  +                    
Sbjct: 112 ENGSFATETVEGGGSSEKYQKITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYRE 171

Query: 71  ---EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFP 125
                 L+ +F E++ NA D        + I V+LD   G ++V +NGRGIPVE H K  
Sbjct: 172 VSFVPGLYKIFDEILVNAADNKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKK-E 230

Query: 126 NKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK-- 183
                E+I   L     +++   +++GG +G G  + N  S+E  V  A        K  
Sbjct: 231 QIYIPELIFGHLLTSSNYNDMQEKVTGGRNGYGAKLCNIFSNEFTVETADSKQKKKFKLT 290

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDP-KIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
           ++  +      K  + +    T++TF+PD  K   D    D   L+K        +    
Sbjct: 291 WTNNMSTMGKAKITECKGDDYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCGTA 350

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
              +  +   + +    +         +    T   +++ I +E          +     
Sbjct: 351 VKLNGTRIPIKSFKKYMEMYTKAIKAERGEDPTSASDKNDIITE----------SPDRRW 400

Query: 303 EWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDL 362
           E      + + +  S+ N+I T  GGTH + +   +   +   A   +NK   ++ +  +
Sbjct: 401 EIGFTVSDGSFQQVSFVNSIATTSGGTHVNYISDQICNKLAD-ALKKKNKTGATLKAAQI 459

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
                  ++  I  P F  QTK +L +  +Q   +  + D F   +++  +        +
Sbjct: 460 KNHIFLFVNSQIVNPAFTSQTKEQLTTRPSQFGSKCVVSDDFLKKVMKTRVMDD-----I 514

Query: 423 IERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           +  +E++  +  ++    + +                  H   L + EGDSA G A   R
Sbjct: 515 LHFAEKKADQILKKTDGNRRSRMNNPKLTDANKAGTKDGHHCTLILTEGDSAKGLAMAGR 574

Query: 483 N---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKV 538
                    V PLRGK+LNV  A  ++I  N +I ++   +G + + +Y +   LRY  +
Sbjct: 575 AVVGPDLFGVFPLRGKLLNVRDASVDQISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHL 634

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQG-----TKSVYAH 592
           +IMTD D DG+HI  LL+ +       L++    L     P+ ++ +G     T S    
Sbjct: 635 MIMTDQDHDGSHIKGLLINYLQVAFPTLLKIPGFLIEFITPIVKVWKGDPKNPTHSKSFF 694

Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652
                ++  E        K +   +KGLG       +    D ++       +       
Sbjct: 695 TIPEYEEWKEAHA--HDKKWQKKYYKGLGTSSTEDAQIYFQDLDRHLKQFHTLQD--KEA 750

Query: 653 KDTQDSINKLMGTKADERFKFIQE--RASFID 682
           +  + + +K    KADER +++++    +++D
Sbjct: 751 ELIELAFSK---KKADERKEWLRQFKPGTYLD 779


>gi|106734231|gb|ABF82592.1| DNA topoisomerase IV subunit beta [Exiguobacterium oxidotolerans]
          Length = 489

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 198/499 (39%), Positives = 284/499 (56%), Gaps = 14/499 (2%)

Query: 60  MRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119
            RPGMYIG T  K LHHL  E++DN++DE +AGY + I+V+++    + V DNGRGIP++
Sbjct: 1   KRPGMYIGSTASKGLHHLVWEIVDNSIDEALAGYCDTIKVTIEPGNSILVEDNGRGIPID 60

Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179
              K   +  +E+ILT LHAGGKF    Y++SGGLHGVG SVVNALS +L V V R   +
Sbjct: 61  IQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTKLEVFVKRNEKL 119

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
           + Q + RG+P   LE       + GT I F PD +IF +   +D   L    +  A+L+ 
Sbjct: 120 YYQSYHRGVPTQDLEIIG-TSEETGTMIRFFPDSEIFQETLEYDYDLLATRLRELAFLNK 178

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            +    + D+        P    F++ GG+K+Y++    ++ ++  E       K G   
Sbjct: 179 GLNIVITDDR-----AEEPITRHFHYEGGIKSYVEHLNRSKEVVHPEPVYVHGTKDGI-- 231

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS-- 356
             VE A+ + +     I S+ N I T EGGTHE+G + ALTR I  YA+     +     
Sbjct: 232 -EVEVALQYNDGFAANIYSFTNNIPTHEGGTHETGFKTALTRVINDYAKKFGLMKEADGT 290

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           +  +D+      I+S+    P+F GQTKTKL + DA+   +      F+ ++++NP  A 
Sbjct: 291 LSGEDVREGMTAIVSIKHPNPQFEGQTKTKLGNSDARTATDTLFSSIFEQFMMENPTNAR 350

Query: 417 KLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            ++E  ++        +R +    RK  +    LPGKLADCS   A  +E++IVEGDSAG
Sbjct: 351 AIVEKGMMASRARMAAKRARELTRRKGVLEVSSLPGKLADCSSRDATISEIYIVEGDSAG 410

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           GSAK  R+R  QA+LP+RGKILNV  A  +KI  + +I  ++ ALG    S++  E  RY
Sbjct: 411 GSAKSGRDRHFQAILPIRGKILNVEKARLDKILGSNEIRTIITALGTSIGSEFNIEKARY 470

Query: 536 EKVIIMTDADVDGAHIASL 554
            KVIIMTDADVDGAHI +L
Sbjct: 471 HKVIIMTDADVDGAHIRTL 489


>gi|326799058|ref|YP_004316877.1| DNA topoisomerase type II subunit alpha B [Sphingobacterium sp. 21]
 gi|326549822|gb|ADZ78207.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Sphingobacterium sp. 21]
          Length = 626

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 185/654 (28%), Positives = 308/654 (47%), Gaps = 74/654 (11%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           NY+  SIR L+  E +R+RPGMYIG        +  ++ L  EV+DN++DE + G    I
Sbjct: 3   NYNEDSIRSLDWKEHIRLRPGMYIGKLGDGSAYDDGIYVLLKEVVDNSIDEFVMGAGKTI 62

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           ++S+     ++V D GRGIP+          ++  +++ ++ GGK+D+  ++ S GL+GV
Sbjct: 63  DISV-SELKVSVRDYGRGIPIG---------SVVDVVSKINTGGKYDSKAFQKSVGLNGV 112

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G   VNALS    V   R       +FS+G  L   EK  +   + GT +TF PD  IF 
Sbjct: 113 GTKAVNALSSSFVVQSYRAGRTRIAEFSKGELLKDEEK--ETTQRNGTAVTFVPDDSIFR 170

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   +    +  M  +  +L+  +   ++  K             F    GL+  L+  +
Sbjct: 171 NY-KYRPEFVENMIWNYVFLNTGLTVNFNGQK-------------FVSENGLRDLLERNI 216

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           +   +    I              +E A+   ++   E  S+ N   T +GGTH++  R 
Sbjct: 217 DVEGMRYPIIHL--------KGEDIEIALTHGQQYGEEYYSFVNGQHTTQGGTHQAAFRE 268

Query: 337 ALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA---- 392
           A+ + ++++      K+     + D+  S +G +++ ++EP F  QTKTKL S       
Sbjct: 269 AVVKTVREFY-----KK--EFDASDIRASVIGAIAIKVQEPVFESQTKTKLGSQSIGPDG 321

Query: 393 ---QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
              +  + + ++   D YL ++P  A  LL+ +++   ER      +++  + A +    
Sbjct: 322 PTVRTFINDFVKKSLDDYLHKHPDTADALLKRILQSERERKDIAGIKKLANERAKKASLH 381

Query: 450 PGKLADCSQNIAHGTE------LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
             KL DC  +     E      LFI EGDSA GS  ++R+   QAV  L+GK LN     
Sbjct: 382 NRKLRDCKIHYDDKNERNQETTLFITEGDSASGSITKSRDVQTQAVFSLKGKPLNAFGLT 441

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            + +  N++   L  AL          + LRY  ++I TDADVDG HI  LL+TFF Q  
Sbjct: 442 KKVVYENEEFNLLQHALNIE----DGIDGLRYNNIVIATDADVDGMHIRLLLMTFFLQFF 497

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
            DL++  H+ ++  PLFR+    +++Y + +E +Q+ + +      GK EI+RFKGLGE+
Sbjct: 498 PDLVKAGHVSILQTPLFRVRNKKETIYCYSDEERQRAIIKLG----GKPEITRFKGLGEI 553

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
              +            L  V ++KD    +  Q  +   MG    +R K I   
Sbjct: 554 SPDEFGLFIG--KDMRLDPVILSKD----QKIQQLLEYYMGKNTPDRQKHIVNN 601


>gi|194879545|ref|XP_001974253.1| GG21630 [Drosophila erecta]
 gi|190657440|gb|EDV54653.1| GG21630 [Drosophila erecta]
          Length = 1446

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 144/681 (21%), Positives = 254/681 (37%), Gaps = 73/681 (10%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----------------------EKALH 75
           S    Y   S      LE + +RP  YIG  +                          L+
Sbjct: 9   SIEQMYQKKS-----QLEHILLRPDSYIGSVEFTKELMWVYDNSQNRMVQREISFVPGLY 63

Query: 76  HLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEII 133
            +F E++ NA D        N I++ +D     ++V +NG+GIPV  H K        +I
Sbjct: 64  KIFDEILVNAADNKQRDKSMNTIKIDIDPERNIVSVWNNGQGIPVTMH-KEQKMYVPTMI 122

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG--IPLS 191
              L     +++   +++GG +G G  + N  S    V  A +    S K + G  +  +
Sbjct: 123 FGHLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSTSFTVETATREYKKSFKQTWGNNMGKA 182

Query: 192 PLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
              + +       TRITF PD              A + +     A  S  V    + +K
Sbjct: 183 SDVQIKDFNGTDYTRITFSPDLAKFKMESLDEDIVALMSRRAYDVAASSKGVSVFLNGNK 242

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
                +              K Y+   +++    S        E         E A    
Sbjct: 243 LAVRNF--------------KDYIDLHVKSTDDDSGPPIKIVHE---VANERWEVACCPS 285

Query: 310 EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGI 369
           +   +  S+ N+I T +GG H   +   L + + +     +NK  I+I    +       
Sbjct: 286 DRGFQQVSFVNSIATYKGGRHVDHVVDNLIKQLLE-VLKKKNKGGINIKPFQVRNHLWVF 344

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           ++  I  P F  QTK  +         +  L + F      N +  + ++E V+  ++ +
Sbjct: 345 VNCLIENPTFDSQTKENMTLQQKGFGSKCTLSEKFI-----NNMSKSGIVESVLAWAKFK 399

Query: 430 LRRRKQREVNRKTAIRKLRLPGKLAD-CSQNIAHGTELFIVEGDSAGGSAKQA---RNRS 485
            +    +   RK++  K     + A+      +    L + EGDSA   A        R+
Sbjct: 400 AQNDIAKTGGRKSSKIKGIPKLEDANEAGGKNSINCTLILTEGDSAKSLAVSGLGVIGRN 459

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED----LRYEKVIIM 541
              V PLRGK+LNV  A  +++  N +I +L + +G + + +Y  ED    LRY KV+IM
Sbjct: 460 FYGVFPLRGKLLNVREANFKQLSENAEINNLCKIIGLQYKKKYLTEDDLKTLRYGKVMIM 519

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           TD D DG+HI  LL+ F +    +L+    L     P+ + T+  + +  +     ++  
Sbjct: 520 TDQDQDGSHIKGLLINFIHTNWPELLRLPFLEEFITPIVKATKKNEELSFYSLPEFEEWK 579

Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
            +   H      I  +KGLG   + + KE   D  +  +L           +    + +K
Sbjct: 580 NDTANHHT--YNIKYYKGLGTSTSKEAKEYFQDMERHRILF--KYDGSVDDESIVMAFSK 635

Query: 662 LMGTKADERFKFIQERASFID 682
                 + R  ++      + 
Sbjct: 636 ---KHIESRKVWLTNHMDEVK 653


>gi|302659966|ref|XP_003021668.1| hypothetical protein TRV_04248 [Trichophyton verrucosum HKI 0517]
 gi|291185576|gb|EFE41050.1| hypothetical protein TRV_04248 [Trichophyton verrucosum HKI 0517]
          Length = 1680

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 143/717 (19%), Positives = 274/717 (38%), Gaps = 69/717 (9%)

Query: 11  TLPPQSQGSSEKLKKSGEIP-----DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMY 65
           + PP +    +   K          ++ +FA ++      +   + +  LE +  RP  Y
Sbjct: 87  STPPNASKKQKAAPKKAASKPLANVENGSFATETVEGGGSSEKYQKITQLEHILKRPDTY 146

Query: 66  IGGTD-----------------------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSL 101
           IG  +                          L+ +F E++ NA D        + I V+L
Sbjct: 147 IGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAADNKQNDPNMSEIRVTL 206

Query: 102 DGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           D   G ++V +NGRGIPVE H K       E+I   L     +++   +++GG +G G  
Sbjct: 207 DKEAGEISVWNNGRGIPVEIHKK-EQTYIPELIFGHLLTSSNYNDMQEKVTGGRNGYGAK 265

Query: 161 VVNALSDELHVTVARQNTIFSQK--FSRGIPLSPLEKKEKVRNKRGTRITFRPDP-KIFG 217
           + N  S+E  V  A        K  ++  +      K  + +    T++TF+PD  K   
Sbjct: 266 LCNIFSNEFTVETADSKQKKKFKLTWTNNMSTMGKAKITECKGDDYTKVTFKPDFAKFGM 325

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           D    D   L+K        +       +  +   + +    +         +    T  
Sbjct: 326 DGMDDDFEALVKRRVYDMAGTCGTAVKLNGTRIPIKSFKKYMEMYTKAIKAERGEDPTSA 385

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337
            +++ I +E          +     E      + + +  S+ N+I T  GGTH + +   
Sbjct: 386 SDKNDIITE----------SPDRRWEIGFTVSDGSFQQVSFVNSIATTSGGTHVNYISDQ 435

Query: 338 LTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           +   +   A   +NK   ++ +  +       ++  I  P F  QTK +L +  +Q   +
Sbjct: 436 ICNKLAD-ALKKKNKTGATLKAAQIKNHIFLFVNSQIVNPAFTSQTKEQLTTRPSQFGSK 494

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             + D F   +++  +        ++  +E++  +  ++    + +              
Sbjct: 495 CVVSDDFLKKVMKTRVMDD-----ILHFAEKKADQILKKTDGNRRSRMNNPKLTDANKAG 549

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
               H   L + EGDSA G A   R         V PLRGK+LNV  A  ++I  N +I 
Sbjct: 550 TKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASVDQISKNAEIQ 609

Query: 515 DLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ-KHL 572
           ++   +G + + +Y +   LRY  ++IMTD D DG+HI  LL+ +       L++    L
Sbjct: 610 NIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINYLQVAFPTLLKIPGFL 669

Query: 573 FLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
                P+ ++ +G     T S         ++  E        K +   +KGLG      
Sbjct: 670 IEFITPIVKVWKGDPKNPTHSKSFFTIPEYEEWKEAHA--HDKKWQKKYYKGLGTSSTED 727

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE--RASFID 682
            +    D ++       +       +  + + +K    KADER +++++    +++D
Sbjct: 728 AQIYFQDLDRHLKQFHTLQD--KEAELIELAFSK---KKADERKEWLRQFKPGTYLD 779


>gi|110430606|gb|ABG73430.1| DNA topoisomerase II [Pleurotus ostreatus]
          Length = 1571

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 151/722 (20%), Positives = 283/722 (39%), Gaps = 68/722 (9%)

Query: 3   DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRP 62
           DD+ +  +       G SE         +      ++AS+ Y     + L  LE +  RP
Sbjct: 65  DDNAEDSAMDVDAGGGESEDDVPPLPGQNKGPAKKKTASETY-----QKLSQLEHILKRP 119

Query: 63  GMYIGGTDE-----------------------KALHHLFSEVIDNAMDEVIAGY-ANLIE 98
             YIG  +                             +  E++ NA D  +     + ++
Sbjct: 120 DSYIGSIETITQAMWIFDADAKRMVHREVKYVPGFFKIVDEILVNAADNKVNDPTMDALK 179

Query: 99  VSLDGNG-FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           V++D     ++V +NG+GIPVE H         E+I   L +   +D+   +++GG +G 
Sbjct: 180 VTIDIENCTISVYNNGKGIPVEMH-TTEKMYIPELIFGHLLSSSNYDDDEKKLTGGRNGY 238

Query: 158 GISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEK-VRNKRGTRITFRPDPK 214
           G  + N  S E  +  A       +SQ +++ +      K  K  RN+  TR+TF+P+  
Sbjct: 239 GAKLANIYSLEFTIETADKVNGKKYSQTWTKNVTQVGKAKITKNSRNEEYTRVTFKPELT 298

Query: 215 IFGDKAGFDAA--RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            FG           L K     A     VK   + ++    K    ++    +       
Sbjct: 299 RFGMTHIDPDTAGLLRKRVYDMAGTVKDVKVYLNGERL---KIKTFKQYVEMYIEAATAG 355

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHES 332
            +      +     +   +           E A A  +   +  S+ N+I T EGGTH +
Sbjct: 356 AKENSGGAAQAKPTVIYEQIS------PRWEVAFATSDGTFQQVSFANSIATIEGGTHVN 409

Query: 333 GLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
            +   L++ I  +       +A ++    +       ++  I  P F  QTK  L     
Sbjct: 410 YIADQLSKSIIAHIAKKN--KAATVKPAQVKNHMWIFVNALIENPTFDSQTKETLTLPAG 467

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPG 451
           +     AL + F   + +     + +++ V+  ++ +  ++ ++   +++  +  +    
Sbjct: 468 KFGSRPALSEEFMKKVQK-----SSIIDQVLNWAKFKADQQIKKTDGSKRNRLTGMAKLS 522

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIR 508
              +     A    L + EGDSA   A        R N  V PLRGK+LNV  A  ++I 
Sbjct: 523 DANNAGTKNAEKCTLILTEGDSAKSLAVAGLAVVGRDNFGVFPLRGKLLNVREARHDQIM 582

Query: 509 NNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
            N++I ++ + +G +   +Y     LRY +++IMTD D DG+HI  LL+ F       L+
Sbjct: 583 KNEEIQNIKKIMGLQHNKEYTNVSSLRYGRLMIMTDQDHDGSHIKGLLINFLDHFYPSLL 642

Query: 568 EQK-HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           +    L     P+ R+T+G +          +  LEE       K     +KGLG    +
Sbjct: 643 KVPEFLVEFVTPIVRVTKGNQRKNFFTIPEYETWLEETPDS--KKWTAKYYKGLGTSSDA 700

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE--RASFID-D 683
             +E      K  +    +  +  +L     + +K    KAD+R ++ ++    +++D +
Sbjct: 701 DAREYFSQMGKHMIPFATMEDEERAL--IDLAFSK---KKADDRKEWQRQFKPGTYLDHN 755

Query: 684 VG 685
           + 
Sbjct: 756 ID 757


>gi|114145437|ref|NP_001041456.1| transcription factor [Ciona intestinalis]
 gi|93003262|tpd|FAA00214.1| TPA: transcription factor protein [Ciona intestinalis]
          Length = 1538

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 136/686 (19%), Positives = 268/686 (39%), Gaps = 70/686 (10%)

Query: 26  SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-------------- 71
               P        S    Y          LE + +RP  YIG  +               
Sbjct: 7   PKTPPGGGGKKRLSVERIYQKK-----TQLEHILLRPDTYIGSVEPVTQAMWVYDEGEGM 61

Query: 72  --------KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENH 121
                     L+ +F E++ NA D        + I+++++     ++V ++G+GIPV  H
Sbjct: 62  VNREITFVPGLYKIFDEILVNAADNKQRDPKMSTIKITINPEKNLISVWNDGKGIPVVEH 121

Query: 122 PKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTV--ARQNTI 179
            K       E+I   L     +D+   +++GG +G G  + N  S +  V      +   
Sbjct: 122 -KGEKMYVPEMIFGHLLTSSNYDDDDKKVTGGRNGYGAKLCNIFSTKFKVETASKDEKMY 180

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLLKMTQSKAYL 237
           FSQ +S+ +  +  +K         T +TF PD + F  +       A L +     A  
Sbjct: 181 FSQSWSKNMSKAHDKKIVSYEKPDFTCVTFHPDLEKFHMESLDKDTVALLSRRAYDIAGS 240

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  VK   +  K   + +              K Y+Q  +      + E F    E+   
Sbjct: 241 TSGVKVFLNGSKLPVKNF--------------KDYVQLYVAQMRDDNGEPFKVIHEQ--- 283

Query: 298 HRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI 357
                E  +   ++  +  S+ N+I T +GG H   +   +T+ + +     +NK  + +
Sbjct: 284 VNPRWEICLTSSDKGFQQVSFVNSIATTKGGRHTDYVIDQVTKKLIE-VVKRKNKGGVEV 342

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
               +       ++  I  P F  QTK  +     +   +  L + F   +  +      
Sbjct: 343 KPFQIKNHCWLFVNCLIENPTFDSQTKENMTLQAKKFGSKCNLTEKFLK-MASSSGIVDN 401

Query: 418 LLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           ++ WV  +++    + +++   +   ++ +       D     +    L + EGDSA   
Sbjct: 402 IMNWVKFKAQ---SQLQKKSAGKSNKLKGVPKLDDANDAGTRHSLDCTLILTEGDSAKTL 458

Query: 478 AKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-- 532
           A    +   R    V PLRGK+LNV  A  ++I +N +I  +++ +G +   +Y  +D  
Sbjct: 459 AVSGLSVIGRDKYGVFPLRGKLLNVRDASHKQIMDNIEINHIIKIMGLKYNKKYETDDDL 518

Query: 533 --LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVY 590
             LRY K++IMTD D DG+HI  LL+ F +     +++++ L     P+ ++T+G++ + 
Sbjct: 519 KSLRYGKLMIMTDQDHDGSHIKGLLINFIHTNWPKMLQRRMLEEFITPIVKVTKGSQVLC 578

Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
            +     +              ++  +KGLG   + + K    D  +   +R   +   +
Sbjct: 579 FYTIPEFEDWQNTI--ENPKSWKVKYYKGLGTSTSKEAKSYFADMLRHR-VRFRYSGAGD 635

Query: 651 SLKDTQDSINKLMGTKADERFKFIQE 676
                  + N+    +AD+R +++  
Sbjct: 636 DG-CIDMAFNR---KRADDRKEWLTN 657


>gi|195119011|ref|XP_002004025.1| GI19824 [Drosophila mojavensis]
 gi|193914600|gb|EDW13467.1| GI19824 [Drosophila mojavensis]
          Length = 1431

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 140/687 (20%), Positives = 254/687 (36%), Gaps = 73/687 (10%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD---------------------- 70
                 S    Y   S      LE + +RP  YIG  +                      
Sbjct: 3   NGKGAMSIEQMYQKKS-----QLEHILLRPDSYIGSVEFTKELMWVHDAEKNRMVQREIS 57

Query: 71  -EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNK 127
               L+ +F E++ NA D        N I+V +D     +++ +NG+GIPV  H K  N 
Sbjct: 58  FVPGLYKIFDEILVNAADNKQRDKSMNTIKVDIDPERNIVSIWNNGQGIPVTMH-KEENM 116

Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187
               +I   L     +++   +++GG +G G  + N  S+   V  A +    S K + G
Sbjct: 117 YVPTMIFGHLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSNSFTVETATKQYKKSFKQTWG 176

Query: 188 --IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLLKMTQSKAYLSGRVKT 243
             +  +     +       TRITF PD   F  +       A + +     A  +  V  
Sbjct: 177 NNMSKAGDPIIKDFNGSDYTRITFSPDLSKFKMESLDSDIVALMSRRAYDIAASTKGVSV 236

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
             +  K                  G K Y+   ++N    + +      E  G      E
Sbjct: 237 FLNGTKVPV--------------RGFKEYIDLFVKNTDDDAGQPIKVVYEACGE---RWE 279

Query: 304 WAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLM 363
            A    +   +  S+ N+I T +GG H   +   + + + +     +NK  ISI    + 
Sbjct: 280 VACCPSDRGFQQVSFVNSIATTKGGRHVDHVVDNVIKQLIE-VLKKKNKNGISIKPFQVR 338

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                 ++  I  P F  QTK  +         +    + F   + +       ++E V+
Sbjct: 339 NHLWIFVNCLIENPTFDSQTKENMTLQAKSFGSKCTFSEKFIANVAK-----AGIVESVL 393

Query: 424 ERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA- 481
             ++ + +    +    +   I+ +       +     +    L + EGDSA   A    
Sbjct: 394 AWAKFKAQNDIAKTGGKKSHKIKGIPKLEDANEAGTKNSINCTLILTEGDSAKSLAVSGL 453

Query: 482 --RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED----LRY 535
               R+   V PLRGK+LNV  A  +++  N +I +L + +G + + +Y   D    LRY
Sbjct: 454 GVIGRNYYGVFPLRGKLLNVREATFKQLTENAEINNLCKIIGLQYKKKYLTMDDLKTLRY 513

Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEE 595
            KV+IMTD D DG+HI  LL+ F +    +L+    L     P+ + T+  + +  +   
Sbjct: 514 GKVMIMTDQDQDGSHIKGLLINFIHTNWPELLRLPFLEEFITPIVKATKKNEEISFYSLP 573

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             ++   +   H      I  +KGLG   + + KE   D  +  +L  + +  ++     
Sbjct: 574 EFEEWKMDTPNHHT--YNIKYYKGLGTSTSKEAKEYFQDMERHRIL-FKYDGQVDD---- 626

Query: 656 QDSINKLMGTKADERFKFIQERASFID 682
            + +        + R  ++      + 
Sbjct: 627 DNIVMAFAKKHVESRKTWLTNHMDEVK 653


>gi|313159318|gb|EFR58682.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Alistipes sp. HGB5]
          Length = 624

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 194/666 (29%), Positives = 307/666 (46%), Gaps = 73/666 (10%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-----KALHHLFSEVIDNAMDEVIA 91
           N + +DNY   +I  L   E +R+RPGMYIG   +       ++ L  EV+DN++DE I 
Sbjct: 6   NTNPNDNYGDDAIVTLSPREHIRLRPGMYIGKLGDGAQADDGIYVLIKEVVDNSVDEFIM 65

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G    I++S+  +  ++V D GRGIP++         +L   ++ ++ GGK+  S ++ +
Sbjct: 66  GVGRQIDISI-ADNVVSVRDYGRGIPLK---------SLAAAVSEMNTGGKYGGSAFKKT 115

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
            GL+GVG+  VN LS E      R     +  F++G+  S    +  VR K GT I+FR 
Sbjct: 116 VGLNGVGVKAVNMLSSEFTARSVRDGEARTVTFAQGLEQSD-TWESGVREKNGTFISFRV 174

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           D ++FG    ++   + +M ++  YL+  +   ++                +    GL  
Sbjct: 175 DEEVFGQY-AYNLEYVEQMIRNYTYLNLGLTFNFNG-------------SSYVSKNGLLD 220

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
            L   +    L      +G           +E AIA          S+ N   T +GGTH
Sbjct: 221 LLNENMTEEPLYPPIHLSGD---------DIEVAIAHGTGYGESYFSFVNGQYTSQGGTH 271

Query: 331 ESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           ++  R A+ + +K++               D+  S +  +SV + +P F  QTK KL S 
Sbjct: 272 QAAFREAIAKTVKEFYH-------KDYDPSDIRTSIIAAISVKVTDPVFESQTKIKLGSK 324

Query: 391 D------AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI 444
           +       +  V + L    D YL ++   A  L + ++E  +ER      ++  R+TA 
Sbjct: 325 EIEPGVSMRNFVVDFLGKHLDDYLHKHSETAQILQKKIVENEKERKAISGIQKKARETAK 384

Query: 445 RKLRLPGKLADCSQNIAHGTE------LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
           +      KL DC  +     E      +FI EG+SA GS  ++R+   QAV  LRGK LN
Sbjct: 385 KVSLNNKKLRDCKIHRTDKHELAEQSMIFITEGNSASGSITKSRDVRTQAVFSLRGKPLN 444

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
                 + +  N++   L  AL          ++LRY KVII TDADVDG HI  L++TF
Sbjct: 445 CYGLTKKVVYENEEFNLLQAALNIE----EDMDNLRYNKVIIATDADVDGMHIRLLMMTF 500

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           F Q   D+I Q HLF++  PLFR+    ++ Y + E+ + K +     +     EI+RFK
Sbjct: 501 FLQFFPDVIRQGHLFVLQTPLFRVRNKKETHYCYSEDERLKAVSRCGANA----EITRFK 556

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           GLGE+   + +E         L +V I KD        D +   MG    ER  FI +  
Sbjct: 557 GLGEISPDEFREFIG--EGMRLDKVRITKD----DPIHDLLEFYMGKNTYERQGFIIDNL 610

Query: 679 SFIDDV 684
              +D+
Sbjct: 611 RIEEDI 616


>gi|17136538|ref|NP_476760.1| topoisomerase 2 [Drosophila melanogaster]
 gi|135995|sp|P15348|TOP2_DROME RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|8711|emb|CAA43523.1| DNA topoisomerase type II [Drosophila melanogaster]
 gi|22946840|gb|AAF53802.2| topoisomerase 2 [Drosophila melanogaster]
          Length = 1447

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 145/681 (21%), Positives = 254/681 (37%), Gaps = 73/681 (10%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----------------------EKALH 75
           S    Y   S      LE + +RP  YIG  +                          L+
Sbjct: 9   SIEQMYQKKS-----QLEHILLRPDSYIGSVEFTKELMWVYDNSQNRMVQKEISFVPGLY 63

Query: 76  HLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEII 133
            +F E++ NA D        N I++ +D     ++V +NG+GIPV  H K        +I
Sbjct: 64  KIFDEILVNAADNKQRDKSMNTIKIDIDPERNMVSVWNNGQGIPVTMH-KEQKMYVPTMI 122

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG--IPLS 191
              L     +++   +++GG +G G  + N  S    V  A +    S K + G  +  +
Sbjct: 123 FGHLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSTSFTVETATREYKKSFKQTWGNNMGKA 182

Query: 192 PLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
              + +       TRITF PD              A + +     A  S  V    + +K
Sbjct: 183 SDVQIKDFNGTDYTRITFSPDLAKFKMDRLDEDIVALMSRRAYDVAASSKGVSVFLNGNK 242

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
                +              K Y+   ++N    S        E         E A    
Sbjct: 243 LGVRNF--------------KDYIDLHIKNTDDDSGPPIKIVHE---VANERWEVACCPS 285

Query: 310 EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGI 369
           +   +  S+ N+I T +GG H   +   L + + +     +NK  I+I    +       
Sbjct: 286 DRGFQQVSFVNSIATYKGGRHVDHVVDNLIKQLLE-VLKKKNKGGINIKPFQVRNHLWVF 344

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           ++  I  P F  QTK  +         +  L + F      N +  + ++E V+  ++ +
Sbjct: 345 VNCLIENPTFDSQTKENMTLQQKGFGSKCTLSEKFI-----NNMSKSGIVESVLAWAKFK 399

Query: 430 LRRRKQREVNRKTAIRKLRLPGKLAD-CSQNIAHGTELFIVEGDSAGGSAKQA---RNRS 485
            +    +   RK++  K     + A+      +    L + EGDSA   A        R 
Sbjct: 400 AQNDIAKTGGRKSSKIKGIPKLEDANEAGGKNSIKCTLILTEGDSAKSLAVSGLGVIGRD 459

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED----LRYEKVIIM 541
              V PLRGK+LNV  A  +++  N +I +L + +G + + +Y  ED    LRY KV+IM
Sbjct: 460 LYGVFPLRGKLLNVREANFKQLSENAEINNLCKIIGLQYKKKYLTEDDLKTLRYGKVMIM 519

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           TD D DG+HI  LL+ F +    +L+    L     P+ + T+  + +  +     ++  
Sbjct: 520 TDQDQDGSHIKGLLINFIHTNWPELLRLPFLEEFITPIVKATKKNEELSFYSLPEFEEWK 579

Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
            +   H      I  +KGLG   + + KE   D ++  +L           +    + +K
Sbjct: 580 NDTANHHT--YNIKYYKGLGTSTSKEAKEYFQDMDRHRILF--KYDGSVDDESIVMAFSK 635

Query: 662 LMGTKADERFKFIQERASFID 682
                 + R  ++      + 
Sbjct: 636 ---KHIESRKVWLTNHMDEVK 653


>gi|223936083|ref|ZP_03627997.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [bacterium Ellin514]
 gi|223895305|gb|EEF61752.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [bacterium Ellin514]
          Length = 609

 Score =  386 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 177/652 (27%), Positives = 297/652 (45%), Gaps = 62/652 (9%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIA 91
            ++  + YD S I+ L  LE +R+R GMYIG        +   + L  EVIDN +DE I 
Sbjct: 2   AENKKNVYDESKIKTLSSLEHIRLRTGMYIGRIGDGSHHDDGCYVLLKEVIDNTIDEYIM 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           GY   +++ +     ++V D GRGIP+           +   ++ ++ G K+++  ++ S
Sbjct: 62  GYGKEVQIKV-EGNKVSVRDFGRGIPLGK---------VIDCVSKINTGAKYNDDVFQFS 111

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
            GL+GVG   VNALS + +V   R        F +G      EK  K     GT I F P
Sbjct: 112 VGLNGVGTKAVNALSKDFYVRSHRGGEFSEASFKQGKLKG--EKTGKTTEPDGTFIEFEP 169

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           DP IF +   F A  + K  +  +YL+  +K  ++              + F    GL  
Sbjct: 170 DPTIFKES-EFRAEYIEKRLRHYSYLNTGLKLQFNG-------------QTFQSKNGLLD 215

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHE 331
            +   L   +            K         +  +         S+ N   T +GGTH 
Sbjct: 216 LVMEDLRADNSEPIYPPLHFANK----TLEFCFTHSNSRYGESFFSFVNGQYTSDGGTHL 271

Query: 332 SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           S  R  L + + ++++            DD+    VG +++ +++P F  QTK KL + +
Sbjct: 272 SAFREGLLKAVNEHSKG-------KYEGDDVRECMVGAVAIRLKDPLFESQTKNKLGNTE 324

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
            +  + N +R+   H+  +N   A K++  V +  + R   +  +++ R+ A        
Sbjct: 325 IRTELVNTVREELLHFFNRNREVAEKIMAKVEDTRQLRKELQDVKKLARERAKAITFRIP 384

Query: 452 KLADCSQNIAHGT------ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
           +L DC  +            +F+ EG SA GS    R+ + QA+  L+GK LNV     +
Sbjct: 385 QLKDCKVHFDKEKGKGKGSMVFLTEGQSAAGSIVSCRDVNTQAIFVLKGKPLNVWDLKRD 444

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
            +  N ++ +L+++L          E LRYEKVI+ TDADVDG HI +LL+T+F++    
Sbjct: 445 IVYKNDEMYNLMRSLDIEDNL----EGLRYEKVILATDADVDGLHIRNLLITYFFRFFDQ 500

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           L++  HL+++  PLFR+    K++Y + E  +    +   K      EI+RFKGLGE+  
Sbjct: 501 LVQDGHLYVLETPLFRVRNKDKTIYCYSEAERDTASQALGKSC----EITRFKGLGEISP 556

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           ++ K+      +  L +VE      +  D  + ++  MG    ER  +I E 
Sbjct: 557 AEFKQFIG--KEMRLSQVEY----AAKPDASNILSFYMGRNTPERKDYIMEN 602


>gi|291513744|emb|CBK62954.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Alistipes shahii WAL 8301]
          Length = 626

 Score =  386 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 188/659 (28%), Positives = 303/659 (45%), Gaps = 73/659 (11%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDE-----KALHHLFSEVIDNAMDEVIAGYANLIE 98
           Y   +I  L   E +R+RPGMY+G   +     +AL+ L  EV+DN++DE I G    I+
Sbjct: 15  YGDDAIVTLSPREHIRLRPGMYVGVVGDGSQPDEALYVLIKEVVDNSIDEFIMGAGRQID 74

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           ++L  +  +TV D GRGIP++         +L   +  ++ GGK+    ++ + GL+GVG
Sbjct: 75  ITL-ADNVVTVRDYGRGIPLK---------SLAAAVGQMNTGGKYGGDAFKKTVGLNGVG 124

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +  VN LS+E      R     +  F++G+ +S    +  V  K GT I++R D +IFG+
Sbjct: 125 VKAVNMLSEEFTARSVRDGEARTVTFAKGLEVSD-RWESGVNEKNGTFISYRVDKEIFGE 183

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              ++   + +  ++ +YL+  +   ++                +    GL   +   + 
Sbjct: 184 Y-AYNLEYVEQKIRNYSYLNLGLTLNFNGK-------------SYVSKNGLLDLVNDNMT 229

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVA 337
              L      TG+          +E  I       E   S+ N   T +GGTH++ LR A
Sbjct: 230 EDPLYPPIHLTGE---------DIEVVITHGTGYGESYDSFVNGQHTTQGGTHQTALRAA 280

Query: 338 LTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA----- 392
           + + +K++               D+  S +  +S+ + +P F  Q KTK  S +      
Sbjct: 281 VAKTVKEFYH-------KDYDPSDIRTSIIAAISIKVTDPIFENQMKTKYGSKEVEPGVS 333

Query: 393 -QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
               V + L    D YL ++   A  L   ++E  +ER      ++  R+TA +      
Sbjct: 334 VNNFVADFLTKHLDDYLHKHAETAQILQRKIVENEKERKAISGIQKKARETAKKVSLNNK 393

Query: 452 KLADCSQNIAHGTE------LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
           KL DC  +     E      +FI EG+SA GS  ++R+   QAV  LRGK LN      +
Sbjct: 394 KLRDCKIHRTDRNELAEQSMIFITEGNSASGSITKSRDVRTQAVFSLRGKPLNCYGLTKK 453

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
            +  N++   L  AL          ++LRY KV+I TDADVDG HI  L++TFF Q   +
Sbjct: 454 VVYENEEFNLLQAALNIE----EDMDNLRYNKVVIATDADVDGMHIRLLMMTFFLQFFPE 509

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           +I Q HLF++  PLFR+    +++Y + EE + K +     +     EI+RFKGLGE+  
Sbjct: 510 VIRQGHLFVLQTPLFRVRNKKETLYCYSEEERLKAVARCGANA----EITRFKGLGEISP 565

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
            + KE         L +V I KD        D +   MG    ER  FI +     +D+
Sbjct: 566 DEFKEFIG--ENMRLDKVRITKD----DPIHDLLEFYMGKNTYERQGFIIDNLRIEEDI 618


>gi|239775118|gb|ACS15317.1| DNA gyrase subunit B [Kribbella catacumbae]
          Length = 558

 Score =  386 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 211/562 (37%), Positives = 313/562 (55%), Gaps = 13/562 (2%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIG T E+ LHHL +EV+DNA+DE +AG+ + I V+L  +G + VVDNGRGIPV+   +
Sbjct: 1   MYIGSTGERGLHHLVTEVVDNAVDEALAGFCDKIVVTLLPDGGVRVVDNGRGIPVDIV-E 59

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
              K  + ++LT LHAGGKF    Y++SGGLHGVG+SVVNALSD L V V +    ++Q 
Sbjct: 60  SEGKPAVTVVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSDRLRVDVNKNGKAYTQS 119

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           FS G+P + L       +  GT ITF P P +F     F    L    +  A+L+  ++ 
Sbjct: 120 FSVGVPDADLADVG-TSDSNGTTITFWPSPGVFESTT-FSFETLTTRFREYAFLNKGLEL 177

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
               ++    + G P ++ F +  GL  Y++     R  +  ++   +  + G +  ++E
Sbjct: 178 VIRDERLELTEDGQPAEQSFKYDDGLVDYVKYLTGIRETVHRDVIAFEAAQ-GDNALSLE 236

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISD 360
            A+ W       + ++ NTI T EGGTHE G R ALT  +  + E      K+   +  D
Sbjct: 237 VAMQWSGSFQESVHTFANTINTHEGGTHEEGFRAALTSLVNSFGEDQGMIKKKEDRLTGD 296

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D+      I+SV + EP+F GQTKTKL + + +  V+  + D    +  QNP E  +++ 
Sbjct: 297 DVREGLTAIISVKLGEPQFEGQTKTKLGNTEVKGFVQRVVNDRLGAWFEQNPQEGREIIR 356

Query: 421 WVIERSEERLRRRKQRE--VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
                +  R+  RK R+   NRK  +    LPGKL+DC        E++IVEGDSAGGSA
Sbjct: 357 KATAAASARIAARKARDLARNRKGLLGGGGLPGKLSDCQSTNPEECEVYIVEGDSAGGSA 416

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538
           K  R+   QA+LP+RGKILNV  A  +++  N +++ ++ ALG      + EE LRY K+
Sbjct: 417 KGGRDPKYQAILPIRGKILNVEKARIDRVLQNNEVLAIISALGTGIHEDFDEEKLRYHKI 476

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKS-VYAHDEEHK 597
           +IM DADVDG HI +LLLT  ++ M  LIE  H++   PPL++I    ++   A+ E  K
Sbjct: 477 VIMADADVDGQHIRTLLLTLLFRFMRPLIEGGHVYAAQPPLYKIRWSNQAPELAYTEREK 536

Query: 598 QKILEEFKKHGKGKIE---ISR 616
             ++E   + GK   +   I R
Sbjct: 537 DGLIEAGVEAGKKLPKDNAIQR 558


>gi|312892466|ref|ZP_07751959.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Mucilaginibacter paludis DSM 18603]
 gi|311295046|gb|EFQ72222.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Mucilaginibacter paludis DSM 18603]
          Length = 631

 Score =  386 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 181/660 (27%), Positives = 302/660 (45%), Gaps = 71/660 (10%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           NYD  SIR L+  E +R+RPGMYIG        +  ++ L  E++DN++DE + G    I
Sbjct: 6   NYDNDSIRSLDWKEHIRLRPGMYIGKLGDGSAYDDGIYVLLKEIVDNSIDEFVMGAGRSI 65

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           E+++  +  ++V D GRGIP+           +   ++ ++ GGK+D+  ++ S GL+GV
Sbjct: 66  EINM-SDQKVSVRDYGRGIPLGK---------VIDCVSKINTGGKYDSKAFQKSVGLNGV 115

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G   VNALS+   V   R       +F++G  +   E +++   + GT I F PD  IF 
Sbjct: 116 GTKAVNALSNSFTVQSYRDGRTKIAEFAKGELVRE-EPEKETTQRNGTAINFLPDDTIFR 174

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F    +  M  +  YL+  +   ++  K             F+   GL   L    
Sbjct: 175 -HYRFIPEFVDNMIWNYVYLNSGLTINFNGQK-------------FFSERGLYDLLVKNT 220

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           ++ +L    I              +E A+   +    E  S+ N   T +GGTH++  R 
Sbjct: 221 DSNALRYPIIHL--------KGEDIELALTHGQAYGEEYYSFVNGQHTTQGGTHQAAFRE 272

Query: 337 ALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA---- 392
           A+ + IK++ E    K        D+  S VG +++ ++EP F  QTKTKL S +     
Sbjct: 273 AIGKTIKEFFE----KDKKDFEPVDIRASIVGAIAIKVQEPVFESQTKTKLGSQNIGPEG 328

Query: 393 ---QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
              +  + + ++   D++L +NP  A  L   +++   ER      +++  + A +    
Sbjct: 329 PTVRTFINDFVKRELDNFLHRNPATADALKARIMQSERERKDIAGIKKLANERAKKASLH 388

Query: 450 PGKLADCSQNIAHGTE------LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
             KL DC  +     E      LFI EGDSA GS  ++R+   QAV  L+GK LN     
Sbjct: 389 NKKLRDCKIHFDDQHERRQDTTLFITEGDSASGSITKSRDVMTQAVFSLKGKPLNCFGLT 448

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            + +  N++   L  AL          + +RY  ++I TDADVDG HI  LL+TFF Q  
Sbjct: 449 KKVVYENEEFNLLQHALNIE----DGIDGIRYNNIVIATDADVDGMHIRLLLMTFFLQFF 504

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
            DL++  H+ ++  PLFR+    +++Y + +E ++  +E+       K EI+RFKGLGE+
Sbjct: 505 PDLVKAGHVSILQTPLFRVRNKKETIYCYSDEERRNAIEKLGN----KPEITRFKGLGEI 560

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
              +               + ++       + +  +   MG    +R + I        D
Sbjct: 561 SPDEFGLFIG-------KDIRLDPVYLKDANIKGLLEYFMGKNTPDRQQHIVNNLRIEKD 613


>gi|332180629|gb|AEE16317.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Treponema brennaborense DSM 12168]
          Length = 606

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 187/659 (28%), Positives = 294/659 (44%), Gaps = 67/659 (10%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAG 92
           +  ++ YD S I+ L  LE +R+R GMYIG           ++ L  EV+DNA+DE I G
Sbjct: 3   EKKANVYDESKIQTLSPLEHIRLRSGMYIGRLGDGSNRSDGIYILLKEVVDNAVDEFIMG 62

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
             + I + +     + V D GRGIP+           +E + + ++ G K+++  ++ S 
Sbjct: 63  NGDRIMIDI-QGSRVKVRDYGRGIPLGK--------VVECV-SVINTGAKYNDDVFQFSV 112

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GL+GVG   VNALS    V  AR        F RG  +S    K K     GT I F PD
Sbjct: 113 GLNGVGTKAVNALSSYFKVLSARGGQCAEAVFERGTLVSSRTGKTKGGVPDGTYIEFEPD 172

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            +IFG    F+   + K   + AYL+  +K   +               E+    GL   
Sbjct: 173 TEIFGSY-EFNMEFVEKRLWNYAYLNAGLKLVCNG-------------SEYVSQNGLLDL 218

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           L ++L+  SL    +   K E+       +E+A            S+ N   T +GGTH 
Sbjct: 219 LNSELDGASLY--PVGYYKGER-------LEFAFTHSNAYGENYFSFVNGQETSDGGTHL 269

Query: 332 SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           S  +    +G+ ++   T         S+D+       L V I++P F  QTK KL + D
Sbjct: 270 SAFKEGFLKGVNEFYRKTFK-------SEDVREGMAAALLVKIKDPVFESQTKNKLGNTD 322

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
            +  + N  +   D +L +NP  A +L + V+     R      ++  ++ A +      
Sbjct: 323 IRSWIVNETKSAVDDWLHRNPETAKQLEQKVVANERLRTELNAVKKEAKEAAKKISLNIP 382

Query: 452 KLADCSQNIAH-----GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
           KL DC  +         T +F+ EGDSA GS    R+   QA+  LRGK  N+       
Sbjct: 383 KLKDCKYHFGDGDKGLNTMIFVTEGDSASGSMVGCRDPMTQAIFSLRGKPENMFGRKRAD 442

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           I  N ++ +L+ ALG           LRYEK+II TDAD DG HI +L+LTFF     +L
Sbjct: 443 IYKNAELYNLMMALGIENDL----AGLRYEKIIIATDADNDGFHIRNLMLTFFLGYFEEL 498

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           +    +F++  PLFR+    ++ Y + E  + + ++          E++RFKGLGE+  +
Sbjct: 499 VTSGRVFILETPLFRVRTKKETRYCYTEAERDREMKALGAGS----EVTRFKGLGEISPN 554

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +            L+ VE++    +LK+    +   MG     R  FI      + ++ 
Sbjct: 555 EFGPFIG--KDMHLVPVEVS----ALKEIPGLLEFYMGKNTPSRRDFIVNN--LLSEID 605


>gi|225450069|ref|XP_002274267.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1489

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 144/699 (20%), Positives = 264/699 (37%), Gaps = 72/699 (10%)

Query: 22  KLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD----------- 70
            L+ S         A ++  + Y   S      LE + +RP  YIG  +           
Sbjct: 8   PLQSSNNANMPAKPAGKTIEETYQKKS-----QLEHILLRPDTYIGSIEKHTQALWVFEN 62

Query: 71  ----------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPV 118
                        L+ +F E++ NA D        + ++V +D     ++V +NG G+PV
Sbjct: 63  NEMVHRSVSYVPGLYKIFDEILVNAADNKQRDPSMDSVKVVIDVEKNCISVYNNGDGVPV 122

Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA--RQ 176
           E H +       E+I   L     +D+   + +GG +G G  + N  S E  +  A  R+
Sbjct: 123 EIHQE-EGVYVPEMIFGHLLTSSNYDDDVKKTTGGRNGYGAKLTNIFSTEFVIETADGRR 181

Query: 177 NTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPDPKIFGDKA--GFDAARLLKMTQS 233
              + Q FS  +         K + +   T+++F+PD   F          A + K    
Sbjct: 182 QKKYKQVFSNNMGKKSEPVITKCKERENWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVD 241

Query: 234 KA-YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
            A  L   VK   +  +   + +                Y+   L++ +    E      
Sbjct: 242 IAGCLGKTVKVELNGQRIPVKSFN--------------DYVNLYLQSAAKSRPESLPRIA 287

Query: 293 EKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK 352
           EK        E  ++  E   +  S+ N+I T +GGTH   +   +   +          
Sbjct: 288 EK---VNERWEICVSLSEGQFQQVSFVNSIATIKGGTHVDYVTNQIANFVMSIVNKKNK- 343

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
              +I +  +       ++  I  P F  QTK  L    +    +  L   F   + ++ 
Sbjct: 344 -NANIKAHTVKNHLWVFVNALIDNPAFDSQTKETLTIRQSSFGSKCELSQEFLKKVSKSG 402

Query: 413 IEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
           +  + L         ++ +  K+ +  ++  +  +       D     +    L + EGD
Sbjct: 403 VVESLLSW----ADYKQNKDLKKTDGTKRQRLTGITKLEDANDAGGRNSEKCTLILTEGD 458

Query: 473 SAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           SA   A    +   R++  V PLRGK+LNV  A  ++I  N +I ++ Q LG +   +Y 
Sbjct: 459 SAKALAMAGISVVGRNHYGVFPLRGKLLNVRDAQKKQILENAEIQNIKQILGLQQGKEYD 518

Query: 530 EED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK-HLFLISPPLFRIT-QGT 586
               LRY  ++IMTD D DG+HI  LL+ F +     L++    L     P+ + T +  
Sbjct: 519 SIKSLRYGHLMIMTDQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATHRNG 578

Query: 587 KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646
           + +  +     +   E    +      I  +KGLG   + + KE   D  K    +  + 
Sbjct: 579 RVLSFYSMPEYESWKESLGGNA-SGWSIKYYKGLGTSTSKEGKEYFKDLGKH--KKDFMW 635

Query: 647 KDLNSLKDTQDSINKLMGTKADERFKFIQ--ERASFIDD 683
            D       + + +K    K +ER  +++  +  +++D 
Sbjct: 636 VDEKDGDAIELAFSK---KKIEERKNWLRQFQPGTYLDQ 671


>gi|302782265|ref|XP_002972906.1| hypothetical protein SELMODRAFT_98330 [Selaginella moellendorffii]
 gi|300159507|gb|EFJ26127.1| hypothetical protein SELMODRAFT_98330 [Selaginella moellendorffii]
          Length = 1151

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 139/692 (20%), Positives = 258/692 (37%), Gaps = 72/692 (10%)

Query: 29  IPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGG-------------------- 68
            P + A   ++  + Y          LE V +RP  Y+G                     
Sbjct: 3   RPGAAAAGGKTIEEIYQKK-----TPLEHVLLRPDTYVGSIEKHTQTLWVYEGGQLVNRA 57

Query: 69  -TDEKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFP 125
            T    L+ +F E++ NA D        + ++V++      ++V +NG G+PVE H +  
Sbjct: 58  VTYVPGLYKIFDEILVNAADNKQRDPIMDAVKVTISVEQNTISVYNNGDGVPVEVHNEQ- 116

Query: 126 NKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN--TIFSQK 183
                E+I   L     +D++  + +GG +G G  + N  S E  +  A       + Q 
Sbjct: 117 GVYVPEMIFGHLLTSSNYDDNEKKTTGGRNGYGAKLANIFSTEFVIETADGKRGKKYKQV 176

Query: 184 FSRGIP-LSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSGR 240
           FS  +   S         N+  T++TF+PD              A + K     A   G 
Sbjct: 177 FSNNMSAKSEPAISSCKSNENWTKVTFKPDLAKFHMTYLEEDVVALMSKRVLDIAGCLG- 235

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                   + +  +    +     F   +  YL +  + +      I+            
Sbjct: 236 --------RTVKVELNGQKLPVKTFSDYVGLYLASAQKGKEETLPRIY-------ERAND 280

Query: 301 TVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISD 360
             E  ++  +   +  S+ N+I T  GGTH   +   +   I++           ++   
Sbjct: 281 RWEVCVSLSDGQFQQVSFVNSIATIRGGTHVQHVSEQIVSHIQEIVNKKNK--NANVKGF 338

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
            +       ++  I  P F  QTK  L +       +  L   F   + +       +++
Sbjct: 339 QIRNHLWVFVNSLIDNPAFDSQTKETLTTRQTSFGSKCELSPEFLKKVSKC-----GVVD 393

Query: 421 WVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
            V+  ++ +  +  ++    ++  +  +       D     +    L + EGDSA   A 
Sbjct: 394 NVLSWADFKQSKELKKNDGAKRQRLTGIAKLDDANDAGGKNSEACTLILTEGDSAKALAM 453

Query: 480 QARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRY 535
              +   R++  V PLRGK+LNV  A  ++I +N +I  + Q LG +    Y     LRY
Sbjct: 454 SGISVVGRNHYGVFPLRGKLLNVREATHKQIMDNAEITSIKQILGLQQGKGYENTKSLRY 513

Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRIT-QGTKSVYAHD 593
             ++IMTD D DG+HI  L++ F +     L++    L     P+ + T +  K +  + 
Sbjct: 514 GHLMIMTDQDHDGSHIKGLIINFIHTFWPSLLKVPGFLVEFITPIVKATHKNGKVLSFYT 573

Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
               +   E  +   KG   I  +KGLG   A + KE   D  K    +     +     
Sbjct: 574 MPEYESWKESLRGETKG-WSIKYYKGLGTSTAKEGKEYFRDLVKH--KKDFAWDNDEDGD 630

Query: 654 DTQDSINKLMGTKADERFKFIQ--ERASFIDD 683
             + + +K    K + R  +++  +  +F+D 
Sbjct: 631 SIELAFSK---KKTEARKIWLRGYQPGTFLDQ 659


>gi|195345101|ref|XP_002039114.1| Top2 [Drosophila sechellia]
 gi|194134244|gb|EDW55760.1| Top2 [Drosophila sechellia]
          Length = 1448

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 144/681 (21%), Positives = 254/681 (37%), Gaps = 73/681 (10%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----------------------EKALH 75
           S    Y   S      LE + +RP  YIG  +                          L+
Sbjct: 9   SIEQMYQKKS-----QLEHILLRPDSYIGSVEFTKELMWVYDNSQNRMVQKEISFVPGLY 63

Query: 76  HLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEII 133
            +F E++ NA D        N I++ +D     ++V +NG+GIPV  H K        +I
Sbjct: 64  KIFDEILVNAADNKQRDKSMNTIKIDIDPERNIVSVWNNGQGIPVTMH-KEQKMYVPTMI 122

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG--IPLS 191
              L     +++   +++GG +G G  + N  S    V  A +    S K + G  +  +
Sbjct: 123 FGHLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSTSFTVETATKEYRKSFKQTWGNNMGKA 182

Query: 192 PLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
              + +       TRITF PD              A + +     A  S  V    + +K
Sbjct: 183 SDVQIKDFNGTDYTRITFSPDLAKFKMDRLDEDIVALMSRRAYDVAASSKGVSVFLNGNK 242

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
                +              K Y+   +++    S        E         E A    
Sbjct: 243 LAVRNF--------------KDYIDLHIKSTDEDSGPPIKIVHE---VANERWEVACCPS 285

Query: 310 EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGI 369
           +   +  S+ N+I T +GG H   +   L + + +     +NK  I+I    +       
Sbjct: 286 DRGFQQVSFVNSIATYKGGRHVDHVVDNLIKQLLE-VLKKKNKGGINIKPFQVRNHLWVF 344

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           ++  I  P F  QTK  +         +  L D F      N +  + ++E V+  ++ +
Sbjct: 345 VNCLIENPTFDSQTKENMTLQQKGFGSKCTLSDKFI-----NNMSKSGIVESVLAWAKFK 399

Query: 430 LRRRKQREVNRKTAIRKLRLPGKLAD-CSQNIAHGTELFIVEGDSAGGSAKQA---RNRS 485
            +    +   RK++  K     + A+      +    L + EGDSA   A        R 
Sbjct: 400 AQNDIAKTGGRKSSKIKGIPKLEDANEAGGKNSINCTLILTEGDSAKSLAVSGLGVIGRD 459

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED----LRYEKVIIM 541
           +  V PLRGK+LNV  A  +++  N ++ +L + +G + + +Y  ED    LRY KV+IM
Sbjct: 460 HYGVFPLRGKLLNVREANYKQLSENAEVNNLCKIIGLQYKKKYLTEDDLKTLRYGKVMIM 519

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           TD D DG+HI  LL+ F +    +L+    L     P+ + T+  + +  +     ++  
Sbjct: 520 TDQDQDGSHIKGLLINFIHTNWPELLRLPFLEEFITPIVKATKKNEELSFYSLPEFEEWK 579

Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
            +   H      I  +KGLG   + + KE   D  +  +L           +    + +K
Sbjct: 580 NDTANHHT--YNIKYYKGLGTSTSKEAKEYFQDMERHRILF--KYDGSVDDESIIMAFSK 635

Query: 662 LMGTKADERFKFIQERASFID 682
                 + R  ++      + 
Sbjct: 636 ---KHIESRKVWLTNHMDEVK 653


>gi|194761210|ref|XP_001962822.1| GF15632 [Drosophila ananassae]
 gi|190616519|gb|EDV32043.1| GF15632 [Drosophila ananassae]
          Length = 1456

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 140/689 (20%), Positives = 257/689 (37%), Gaps = 73/689 (10%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-------------------- 70
              +    S    Y   S      LE + +RP  YIG  +                    
Sbjct: 5   SKASGGAMSIEQMYQKKS-----QLEHILLRPDSYIGSVEYTKELMWVYDFEKNRMVQRE 59

Query: 71  ---EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFP 125
                 L+ +F E++ NA D        N I++ +D     +++ +NG+GIPV  H K  
Sbjct: 60  LSFVPGLYKIFDEILVNAADNKQRDKSMNTIKIDIDPERNVVSIWNNGQGIPVTMH-KEQ 118

Query: 126 NKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFS 185
                 +I   L     +++   +++GG +G G  + N  S    V  A +    S K +
Sbjct: 119 KMYVPTMIFGHLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSTSFTVETATKQYKKSFKQT 178

Query: 186 RG--IPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSGRV 241
            G  +  +     +       TRITF PD              A + +     A  +  V
Sbjct: 179 WGNNMAKASDPTIKDFNGSDFTRITFSPDLAKFKMESLEEDIVALMSRRAFDVAASTKGV 238

Query: 242 KTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
               +  K   + +              K Y+   ++N+   + +      E        
Sbjct: 239 AVFLNGTKLTVKNF--------------KDYIDLHIKNQDDDAGQPIKIVHE---VANER 281

Query: 302 VEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDD 361
            E A    +   +  S+ N+I T +GG H   +  ++ + + +     +NK  I+I    
Sbjct: 282 WEVACCPSDRGFQQVSFVNSIATTKGGRHVDHVVDSVIKQLIE-VLKKKNKGGINIKPFQ 340

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
           +       ++  I  P F  QTK  +         + AL + F        +  + ++E 
Sbjct: 341 VRNHLWIFVNCLIENPTFDSQTKENMTLQAKSFGSKCALSEKFIS-----NMSKSGIVES 395

Query: 422 VIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD-CSQNIAHGTELFIVEGDSAGGSAKQ 480
           V+  ++ + +    +   RK++  K     + A+      +    L + EGDSA   A  
Sbjct: 396 VLAWAKFKAQNDIAKTGGRKSSKIKGIPKLEDANEAGGKNSINCTLILTEGDSAKSLAVS 455

Query: 481 A---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED----L 533
                 R+   V PLRGK+LNV  A  +++  N +I +L + +G + + +Y  ED    L
Sbjct: 456 GLGVIGRNFYGVFPLRGKLLNVREANFKQLSENAEINNLCKIIGLQYKKKYLTEDDLKTL 515

Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHD 593
           RY KV+IMTD D DG+HI  LL+ F +    +L+    L     P+ + T+  + +  + 
Sbjct: 516 RYGKVMIMTDQDQDGSHIKGLLINFIHTNWPELLRLPFLEEFITPIVKATKKNEEISFYS 575

Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
               ++   +   H      I  +KGLG   + + KE   D  +  +L           +
Sbjct: 576 LPEFEEWKIDTPNHHT--YNIKYYKGLGTSTSKEAKEYFQDMERHRILF--KYDGSVDDE 631

Query: 654 DTQDSINKLMGTKADERFKFIQERASFID 682
               + ++      + R  ++      + 
Sbjct: 632 SIVMAFSR---KHIESRKVWLTNHMDEVK 657


>gi|297736284|emb|CBI24922.3| unnamed protein product [Vitis vinifera]
          Length = 1452

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 144/699 (20%), Positives = 264/699 (37%), Gaps = 72/699 (10%)

Query: 22  KLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD----------- 70
            L+ S         A ++  + Y   S      LE + +RP  YIG  +           
Sbjct: 8   PLQSSNNANMPAKPAGKTIEETYQKKS-----QLEHILLRPDTYIGSIEKHTQALWVFEN 62

Query: 71  ----------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPV 118
                        L+ +F E++ NA D        + ++V +D     ++V +NG G+PV
Sbjct: 63  NEMVHRSVSYVPGLYKIFDEILVNAADNKQRDPSMDSVKVVIDVEKNCISVYNNGDGVPV 122

Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA--RQ 176
           E H +       E+I   L     +D+   + +GG +G G  + N  S E  +  A  R+
Sbjct: 123 EIHQE-EGVYVPEMIFGHLLTSSNYDDDVKKTTGGRNGYGAKLTNIFSTEFVIETADGRR 181

Query: 177 NTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPDPKIFGDKA--GFDAARLLKMTQS 233
              + Q FS  +         K + +   T+++F+PD   F          A + K    
Sbjct: 182 QKKYKQVFSNNMGKKSEPVITKCKERENWTKVSFKPDLAKFNMTHLEDDVVALMKKRVVD 241

Query: 234 KA-YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
            A  L   VK   +  +   + +                Y+   L++ +    E      
Sbjct: 242 IAGCLGKTVKVELNGQRIPVKSFN--------------DYVNLYLQSAAKSRPESLPRIA 287

Query: 293 EKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK 352
           EK        E  ++  E   +  S+ N+I T +GGTH   +   +   +          
Sbjct: 288 EK---VNERWEICVSLSEGQFQQVSFVNSIATIKGGTHVDYVTNQIANFVMSIVNKKNK- 343

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
              +I +  +       ++  I  P F  QTK  L    +    +  L   F   + ++ 
Sbjct: 344 -NANIKAHTVKNHLWVFVNALIDNPAFDSQTKETLTIRQSSFGSKCELSQEFLKKVSKSG 402

Query: 413 IEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
           +  + L         ++ +  K+ +  ++  +  +       D     +    L + EGD
Sbjct: 403 VVESLLSW----ADYKQNKDLKKTDGTKRQRLTGITKLEDANDAGGRNSEKCTLILTEGD 458

Query: 473 SAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           SA   A    +   R++  V PLRGK+LNV  A  ++I  N +I ++ Q LG +   +Y 
Sbjct: 459 SAKALAMAGISVVGRNHYGVFPLRGKLLNVRDAQKKQILENAEIQNIKQILGLQQGKEYD 518

Query: 530 EED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK-HLFLISPPLFRIT-QGT 586
               LRY  ++IMTD D DG+HI  LL+ F +     L++    L     P+ + T +  
Sbjct: 519 SIKSLRYGHLMIMTDQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVKATHRNG 578

Query: 587 KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646
           + +  +     +   E    +      I  +KGLG   + + KE   D  K    +  + 
Sbjct: 579 RVLSFYSMPEYESWKESLGGNA-SGWSIKYYKGLGTSTSKEGKEYFKDLGKH--KKDFMW 635

Query: 647 KDLNSLKDTQDSINKLMGTKADERFKFIQ--ERASFIDD 683
            D       + + +K    K +ER  +++  +  +++D 
Sbjct: 636 VDEKDGDAIELAFSK---KKIEERKNWLRQFQPGTYLDQ 671


>gi|302812673|ref|XP_002988023.1| hypothetical protein SELMODRAFT_127267 [Selaginella moellendorffii]
 gi|300144129|gb|EFJ10815.1| hypothetical protein SELMODRAFT_127267 [Selaginella moellendorffii]
          Length = 1151

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 139/692 (20%), Positives = 258/692 (37%), Gaps = 72/692 (10%)

Query: 29  IPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGG-------------------- 68
            P + A   ++  + Y          LE V +RP  Y+G                     
Sbjct: 3   RPGAAAAGGKTIEEIYQKK-----TPLEHVLLRPDTYVGSIEKHTQTLWVYEGGQLVNRA 57

Query: 69  -TDEKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFP 125
            T    L+ +F E++ NA D        + ++V++      ++V +NG G+PVE H +  
Sbjct: 58  VTYVPGLYKIFDEILVNAADNKQRDPSMDAVKVTISVEQNTISVYNNGDGVPVEVHNEQ- 116

Query: 126 NKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN--TIFSQK 183
                E+I   L     +D++  + +GG +G G  + N  S E  +  A       + Q 
Sbjct: 117 GVYVPEMIFGHLLTSSNYDDNEKKTTGGRNGYGAKLANIFSTEFVIETADGKRGKKYKQV 176

Query: 184 FSRGIP-LSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSGR 240
           FS  +   S         N+  T++TF+PD              A + K     A   G 
Sbjct: 177 FSNNMSAKSEPAISSCKSNENWTKVTFKPDLAKFHMTYLEEDVVALMSKRVLDIAGCLG- 235

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                   + +  +    +     F   +  YL +  + +      I+            
Sbjct: 236 --------RTVKVELNGQKLPVKTFSDYVGLYLASAQKGKEETLPRIY-------ERAND 280

Query: 301 TVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISD 360
             E  ++  +   +  S+ N+I T  GGTH   +   +   I++           ++   
Sbjct: 281 RWEVCVSLSDGQFQQVSFVNSIATIRGGTHVQHVSEQIVSHIQEIVNKKNK--NANVKGF 338

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
            +       ++  I  P F  QTK  L +       +  L   F   + +       +++
Sbjct: 339 QIRNHLWVFVNSLIDNPAFDSQTKETLTTRQTSFGSKCELSPEFLKKVSKC-----GVVD 393

Query: 421 WVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
            V+  ++ +  +  ++    ++  +  +       D     +    L + EGDSA   A 
Sbjct: 394 NVLSWADFKQSKELKKNDGAKRQRLTGIAKLDDANDAGGKNSEACTLILTEGDSAKALAM 453

Query: 480 QARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRY 535
              +   R++  V PLRGK+LNV  A  ++I +N +I  + Q LG +    Y     LRY
Sbjct: 454 SGISVVGRNHYGVFPLRGKLLNVREATHKQIMDNAEITSIKQILGLQQGKGYENTKSLRY 513

Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRIT-QGTKSVYAHD 593
             ++IMTD D DG+HI  L++ F +     L++    L     P+ + T +  K +  + 
Sbjct: 514 GHLMIMTDQDHDGSHIKGLIINFIHTFWPSLLKVPGFLVEFITPIVKATHKNGKVLSFYT 573

Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
               +   E  +   KG   I  +KGLG   A + KE   D  K    +     +     
Sbjct: 574 MPEYESWKESLRGETKG-WSIKYYKGLGTSTAKEGKEYFRDLVKH--KKDFAWDNDEDGD 630

Query: 654 DTQDSINKLMGTKADERFKFIQ--ERASFIDD 683
             + + +K    K + R  +++  +  +F+D 
Sbjct: 631 SIELAFSK---KKTEARKIWLRGYQPGTFLDQ 659


>gi|324500526|gb|ADY40245.1| DNA topoisomerase 2 [Ascaris suum]
          Length = 1388

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 148/675 (21%), Positives = 250/675 (37%), Gaps = 70/675 (10%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTD------------------------EKAL 74
           S    Y   S      LE + +RP  YIG  +                           L
Sbjct: 80  SIEKIYQKKS-----QLEHILLRPDTYIGSVEHTDRAPMWVYDAEAERIVQRDISYVPGL 134

Query: 75  HHLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEI 132
           + +F EV+ NA D        + I+V+++     + V +NG+GIPV  H K  N    E+
Sbjct: 135 YKIFDEVLVNAADNKQRDPKMSTIKVTINKEKNEIAVFNNGKGIPVVRH-KVENVYVPEL 193

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTV--ARQNTIFSQKFSRGIPL 190
           I  TL     +D+S  +++GG +G G  + N  S E  V         +F Q +   +  
Sbjct: 194 IFGTLLTSSNYDDSERKVTGGRNGYGAKLCNIFSKEFTVETSSKEYGKVFKQTWINNMTK 253

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
                  K   +  TR+TF+PD   F          A + +     A  +  VK   +  
Sbjct: 254 DKEPFIGKSSGEDFTRVTFKPDLSKFKMTELDDDIVALMSRRAYDVAGSTKGVKVYLNNK 313

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
                              G K Y+    ++      E +    E   T     + AI  
Sbjct: 314 --------------LLPVQGFKQYVDQYAKHNLDSQGEPYKVIYE---TANERWDVAITV 356

Query: 309 CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVG 368
            E+  +  S+ N+I T +GG H   +   +T  +    +    K  IS+    +      
Sbjct: 357 SEKGFQQVSFVNSIATTKGGRHVDYVADQITSKLIDTIKKKIGKSGISVKPFQIKNHMWV 416

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
            ++  I  P F  QTK  L         +  L + F + +++  I    +      R ++
Sbjct: 417 FVNCLIENPTFDSQTKEALTLQSKSFGSKCELSERFVNSVMKCGIVEAVMAW---VRFKQ 473

Query: 429 RLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRS 485
           +    K+    R + ++ +       D     +    L + EGDSA   A        R 
Sbjct: 474 QETLDKKCSSKRTSKLKGVPKLEDANDAGTKNSSLCTLILTEGDSAKSLAVSGLGVVGRD 533

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED----LRYEKVIIM 541
              V PLRGK+LNV     ++I  N +I  L++ +G + R +Y ++D    LRY KV++M
Sbjct: 534 RYGVFPLRGKMLNVREGNHKQIMENAEINALIKIIGLQYRLKYDKDDDMKTLRYGKVMVM 593

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
            D D DG+HI  L++ F +     LI +  +     P+ + T+G +           +  
Sbjct: 594 ADQDQDGSHIKGLVINFIHYNWPALIRRNFVEEFITPIVKATKGKEEYSFFSLPEYNEWR 653

Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
                       I  +KGLG   + + KE   D  +   +R     D         + +K
Sbjct: 654 N--NTENWKSYRIKYYKGLGTSTSKEAKEYFTDMARHR-IRFRYAGD-EDDSSIDMAFSK 709

Query: 662 LMGTKADERFKFIQE 676
               K ++R  ++  
Sbjct: 710 ---RKIEDRKVWLTN 721


>gi|159484508|ref|XP_001700298.1| DNA topoisomerase II [Chlamydomonas reinhardtii]
 gi|158272465|gb|EDO98265.1| DNA topoisomerase II [Chlamydomonas reinhardtii]
          Length = 1167

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 138/714 (19%), Positives = 260/714 (36%), Gaps = 92/714 (12%)

Query: 22  KLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD----------- 70
           K         +PA   +S  + Y          LE + +RP  YIG T+           
Sbjct: 1   KEPLGPSNAAAPAAGGKSIEEMYQKK-----TQLEHIILRPDTYIGSTERQPNHVWVHTG 55

Query: 71  ----------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDG-NGFLTVVDNGRGIPV 118
                        L+ +F E++ NA D  +     + I+V +D     + V +NG+GIPV
Sbjct: 56  QKMEYKQVSYPPGLYKIFDEILVNAADNKVRDATMDTIKVDIDAATNSIRVWNNGKGIPV 115

Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYE---------------ISGGLHGVGISVVN 163
           + H K       E+I   L     +++S  +               I+GG +G G  + N
Sbjct: 116 DVH-KEEGVYVPELIFGHLLTSSNYNDSEKKALTVHTNIPYAPPPQITGGRNGYGAKLAN 174

Query: 164 ALSDELHVTVARQN--TIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDK- 219
             S E  +     +    + Q F++ + +    K    + +   T ITF+PD   FG + 
Sbjct: 175 IFSTEFIIETCDGSRLKRYKQTFTKNMQVKGTPKITDCKASDNWTSITFKPDLARFGMEA 234

Query: 220 -AGFDAARLLKMTQSKAYL-SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
                 + L +     A +     K  ++ ++   + +            G+  + +   
Sbjct: 235 LDEDVVSLLRRRVYDMAGVLGKGAKVYYNGERLSIKSFQEYVDMYLGPKNGVPRFCERI- 293

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337
                                    E  I+  + + +  S+ N+I T +GGTH   +   
Sbjct: 294 ---------------------NDRWEVCISITDGSFQQVSFVNSISTQKGGTHVDYIVNQ 332

Query: 338 LTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           + +   +     +  +  +I    +       L+ ++  P F  QTK  L         +
Sbjct: 333 VVKHATE-KLSKKTTKTAAIKPAMVKNHLWVFLNCYVENPAFDSQTKETLTLRATAFGSK 391

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA-DC 456
             L  P    +++       L + +I  +E + ++  ++    K +          A D 
Sbjct: 392 CELPVPLLDKVLK-----AGLSDSIIRFAEFKSQKELKKGDGTKRSRLHGITKLDDANDA 446

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
               +    L + EGDSA   A        R +  V PLRGK+LNV  A + +I  N +I
Sbjct: 447 GGPRSRECTLILTEGDSAKALAISGLGVVGRDHYGVFPLRGKLLNVREASAAQIAANAEI 506

Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ-KH 571
            ++ Q +G +  +       LRY  ++IMTD D DG+HI  L++ F +     L+     
Sbjct: 507 QNIKQIMGLQHGKVYENTTSLRYGHLMIMTDQDHDGSHIKGLIMNFLHSFFPSLLRIPGF 566

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           L     P+ +  +G  +   +     +   E    +     +I  +KGLG     + +E 
Sbjct: 567 LLEFITPIVKARRGRDTKVFYTMPEYEAWKESLG-NATTAWDIKYYKGLGTSTKEEAQEY 625

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE--RASFIDD 683
               +      V   +        + + +K    + D+R +++      +F+D 
Sbjct: 626 FSRLDLHRKEFV--WEGDEDGDSIELAFSK---KRVDDRKEWLSNFVPGTFLDQ 674


>gi|56269784|gb|AAH86970.1| Top2a protein [Danio rerio]
 gi|197247280|gb|AAI65253.1| Top2a protein [Danio rerio]
          Length = 1570

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 136/661 (20%), Positives = 252/661 (38%), Gaps = 64/661 (9%)

Query: 50  RILEGLEPVRMRPGMYIGGTDE----------------------KALHHLFSEVIDNAMD 87
           +    LE + +RP  YIG  +                         L+ +F E++ NA D
Sbjct: 34  QKKTQLEHILLRPDTYIGSVEPVTQQMWVFDEDTGMNCRDITFVPGLYKIFDEILVNAAD 93

Query: 88  EVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
                   N I+V++D  N  ++V +NG+GIPV  H K        +I   L     +D+
Sbjct: 94  NKQRDKTMNCIKVNIDPENNTISVWNNGKGIPVVEH-KVEKVYVPALIFGQLLTSSNYDD 152

Query: 146 STYEISGGLHGVGISVVNALSDELHVT--VARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
              +++GG +G G  + N  S +  V          F Q +   +  +   K +      
Sbjct: 153 DEKKVTGGRNGYGAKLCNIFSLKFTVETACRESKRCFKQTWFDNMGRAGESKIKPFDGDD 212

Query: 204 GTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
            T ITF+PD              A L +     A  +  V+   +  +            
Sbjct: 213 YTCITFQPDLAKFKMQALDKDTVALLTRRAYDIAGSTKGVRVLLNGKRLPI--------- 263

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
                   +TY+   ++++   +    T   E         E  +   E+  +  S+ N+
Sbjct: 264 -----NNFRTYVDLYVKDKVDETGSPLTVVHEM---VNERWEVCLTLSEKGFQQVSFVNS 315

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
           I T +GG H   +   +   + +     +NK  +++    +       ++  I  P F  
Sbjct: 316 IATTKGGRHTDYVADQIVSKLIE-VVKKKNKAGVAVKPFQVKNHMWLFVNCLIENPSFDS 374

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK  +           +L D F             ++ WV  +++ +L ++      + 
Sbjct: 375 QTKENVTLQQKNFGSACSLSDKFVK-QANGCGIVESIMNWVKFKAQAQLNKKCS--AVKH 431

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILN 498
           T I+ +       D     ++   L + EGDSA   A        R    V PLRGK+L+
Sbjct: 432 TKIKGVPKLDDANDAGGKNSNSCTLILTEGDSAKTLAVSGLGVVGRDRYGVFPLRGKMLS 491

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREED----LRYEKVIIMTDADVDGAHIASL 554
           V  A  ++I  N +I ++++ LG + +  Y + +    LRY K++IMTD D DG+HI  L
Sbjct: 492 VREASHKQIMENAEINNIIKILGLQYKKNYSDPESLKSLRYGKLMIMTDQDQDGSHIKGL 551

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           L+ F +     L+    L     P+ + +   + +  +      +  E  K+      +I
Sbjct: 552 LINFIHHNWPSLLRHNFLEEFITPIIKASNKKQEISFYSIPEFTEWKE--KQSSIKSWKI 609

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
             +KGLG   + + KE   D  +   +  + +      +    + +K M    +ER +++
Sbjct: 610 KYYKGLGTSTSKEAKEYFSDMTRHR-IPFKYS-GPADDEAITLAFSKKM---IEERKEWL 664

Query: 675 Q 675
            
Sbjct: 665 T 665


>gi|307180209|gb|EFN68242.1| DNA topoisomerase 2 [Camponotus floridanus]
          Length = 1502

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 139/696 (19%), Positives = 270/696 (38%), Gaps = 74/696 (10%)

Query: 20  SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-------- 71
                ++G     P+   ++    Y   S      LE + +RP  YIG  +         
Sbjct: 1   MSTALENGAGDGKPSTKQKTIEGIYQKKS-----QLEHILLRPDTYIGSVEPVTEMMWVF 55

Query: 72  ---------------KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGR 114
                            L+ +F E++ NA D        ++I++ +D  N  ++V +NG+
Sbjct: 56  DKEKDMMIQKDIKYVPGLYKIFDEILVNAADNKQRDPKMDMIKIDIDSENNTISVWNNGK 115

Query: 115 GIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA 174
           GIPV  H K  N     +I   L     +D+   +++GG +G G  + N  S    V  A
Sbjct: 116 GIPVVIH-KEENMYVPTMIFGHLLTSSNYDDEEEKVTGGRNGYGAKLCNIFSHRFTVETA 174

Query: 175 RQNTIFSQKFSRG--IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLLKM 230
            +      K + G  +  +   + ++      T++TF PD   F  +         + + 
Sbjct: 175 TKEYKKCLKQTWGDNMGKASEPRIKEYHGDDFTKVTFSPDLSKFKMQSLDNDIVGLMSRR 234

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
               A  S  VK   +  +   + +              K Y+   ++ +          
Sbjct: 235 AYDVAASSKGVKVYLNGSRIPVKNF--------------KDYVDFYIKGKEDDVGNPLKI 280

Query: 291 KTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
             E         E A+   ++  +  S+ N+I T +GG H   +   + + + +     +
Sbjct: 281 VYE---NCGPRWEVALTLSDKGFQQMSFVNSIATTKGGRHVDHVTELIVKQLIE-TLKKK 336

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
           NK  ++I    +       ++  I  P F  QTK  +         +  L D F   + +
Sbjct: 337 NKAGVAIKPFQIKNHLWIFVNCLINNPTFDSQTKENMTLQAKSFGSKCVLTDKFIASITK 396

Query: 411 NPIEATKLLEWVIERSEERLRRRKQR--EVNRKTAIRKLRLPGKLADCSQNIAHGTELFI 468
                  ++E V+  ++ +   + ++    +++  +  +       D     +    L +
Sbjct: 397 -----IGVVEAVLSWAKFKADSQLEKLGPKSKQRKLHGIPKLEDANDAGTAKSLECTLIL 451

Query: 469 VEGDSAGGSAKQ---ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
            EGDSA   A     +  R    + PLRGK+LNV  A  ++I  N +I +L++ LG + +
Sbjct: 452 TEGDSAKTMAVSGIASIGRDKYGIFPLRGKMLNVREATHKQILENAEINNLIKILGLQYK 511

Query: 526 SQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581
            +Y   D    LRY K++IMTD D DG+HI  LL+ F +     L++   +     P+ +
Sbjct: 512 KKYETRDDLKTLRYGKMMIMTDQDQDGSHIKGLLINFIHHNWPSLLKLNFIEEFITPIVK 571

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
            T+G++++        +   +E +       +I  +KGLG   A + KE   +  +   +
Sbjct: 572 ATKGSQTLSFFSLPEFEAWKKETENFHT--YKIKYYKGLGTSTAKEAKEYFENMARHR-I 628

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           R     D +  ++   + +K      D+R  ++   
Sbjct: 629 RFRYEGDRDD-QNIIMAFSK---KCVDQRKDWLMNH 660


>gi|17535065|ref|NP_496536.1| TOPoisomerase family member (top-2) [Caenorhabditis elegans]
 gi|6175065|sp|Q23670|TOP2_CAEEL RecName: Full=Probable DNA topoisomerase 2; AltName: Full=DNA
           topoisomerase II
 gi|3878527|emb|CAA88867.1| C. elegans protein K12D12.1, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
 gi|3881920|emb|CAA94177.1| C. elegans protein K12D12.1, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 1520

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 137/683 (20%), Positives = 257/683 (37%), Gaps = 71/683 (10%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-------------------- 70
                   +  D Y   S      LE + +RP  YIG  +                    
Sbjct: 54  KGGGSKQMAIEDIYQKKS-----QLEHILLRPDTYIGSVEHTEKTPMWVYNMEESKLEQR 108

Query: 71  ----EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKF 124
                  L+ ++ E++ NA D        N I+++++     ++V +NG+GIPV  H K 
Sbjct: 109 DISYVPGLYKIYDEILVNAADNKQRDPKMNTIKITINKEKNEISVYNNGKGIPVTQH-KV 167

Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDE--LHVTVARQNTIFSQ 182
                 E+I  TL     +++   +++GG +G G  + N  S +  L  +     + F Q
Sbjct: 168 EKVYVPELIFGTLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSTKFTLETSSRDYKSAFKQ 227

Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSGR 240
            + + +      K  K  ++  T+ITF PD       +        + +     A  S  
Sbjct: 228 TWIKNMTRDEEPKIVKSTDEDFTKITFSPDLAKFKMKELDDDICHLMARRAYDVAGSSKG 287

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
           V    +  +   +              G + Y+Q      +     +     E+ G    
Sbjct: 288 VAVFLNGKRIPIK--------------GFEDYVQMYTSQFNNEGEPLK-IAYEQVGD--- 329

Query: 301 TVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISD 360
             + A+A  E+  +  S+ N+I T +GG H   +   +        +    K +++I   
Sbjct: 330 RWQVALALSEKGFQQVSFVNSIATTKGGRHVDYVADQMVAKFIDSIKRKLTKTSMNIKPF 389

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
            +       ++  I  P F  QTK  +     Q      L + F        I    +  
Sbjct: 390 QIKNHMWVFVNCLIENPTFDSQTKETMTLQQKQFGSTCVLSEKFSKAASSVGITDAVMSW 449

Query: 421 WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
               R ++     K+    + + ++ +       D     +    L + EGDSA   A  
Sbjct: 450 ---VRFKQMDDLNKKCSKTKTSKLKGIPKLEDANDAGTKNSQQCTLILTEGDSAKTLAVS 506

Query: 481 ARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED----L 533
             +   R    V PLRGK+LNV     ++I +N ++  +++ LG + + +Y  ED    L
Sbjct: 507 GLSVVGRDKYGVFPLRGKLLNVREGNMKQIADNAEVNAMIKILGLQYKKKYETEDDFKTL 566

Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHD 593
           RY K+++M D D DG+HI  L++ F +     LI++  +     P+ + T+G + V  + 
Sbjct: 567 RYGKLMVMADQDQDGSHIKGLVINFIHHFWPSLIQRNFVEEFITPIVKATKGKEEVSFYS 626

Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
                +             +I  +KGLG   + + KE  +D  +   +R + N   +   
Sbjct: 627 LPEYSEW--RMNTDNWKSYKIKYYKGLGTSTSKEAKEYFLDMVRHR-IRFKYNGADDDNA 683

Query: 654 DTQDSINKLMGTKADERFKFIQE 676
               + +K    K +ER  ++ +
Sbjct: 684 -VDMAFSK---KKIEERKDWLSK 702


>gi|91079588|ref|XP_967653.1| PREDICTED: similar to topoisomerase II [Tribolium castaneum]
          Length = 1552

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 136/677 (20%), Positives = 261/677 (38%), Gaps = 74/677 (10%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----------------------EKAL 74
           Q+  + Y   S      LE + +RP  YIG  +                          L
Sbjct: 31  QTIEETYQKKS-----QLEHILLRPDTYIGSVEKVDENMWVYDRDTEMIIQKNISYVPGL 85

Query: 75  HHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
           + +F E++ NA D        + I++ ++  +  ++V +NG+GIPV  H K  N     +
Sbjct: 86  YKIFDEILVNAADNKQRDNTMDCIKIEINQDDNVISVWNNGQGIPVAMH-KSENMYVPTM 144

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG--IPL 190
           I   L     +++   +++GG +G G  + N  S +  V  A +      K   G  +  
Sbjct: 145 IFGHLLTSSNYNDKEEKVTGGRNGYGAKLCNIFSTKFTVETATKEYKRHFKQVWGNNMTK 204

Query: 191 SPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
           +   K +    +  T+ITF PD              + + +     A  +  VK   +  
Sbjct: 205 ASEPKIKDHFGEDFTKITFSPDLVKFKMEKLEDDIVSLMCRRAFDVAASTRGVKVFLNGK 264

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +   + +              K Y+    + +    +E      E         E A+  
Sbjct: 265 RVPVKNF--------------KDYVDFFTKGKDEDGNEKCKVVYE---VCNERWEVAMTL 307

Query: 309 CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVG 368
            +   +  S+ N+I T +GG H   +   + + I +     +NK  ++I    +      
Sbjct: 308 SDRGFQQMSFVNSIATTKGGRHVDYVTEMIVKQIIE-VLKKRNKGGVAIKPFQVKNHMWI 366

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
            ++  I  P F  QTK  +         +  L + F   +V+     + ++E V+  ++ 
Sbjct: 367 FINCLIVNPTFDSQTKENMTLQAKSFGSKCTLSEKFITQVVK-----SGIVESVLSWAKF 421

Query: 429 RLRRRKQREV--NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RN 483
           + +   +++    +++ ++ +       +          L + EGDSA   A        
Sbjct: 422 KAQTELEKKTAGKKQSKLKGIPKLEDANEAGTKNGLRCTLILTEGDSAKSLAVSGLGVIG 481

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR----EEDLRYEKVI 539
           R    V PLRGK+LNV  A  ++I  NQ+I +L++ LG + + +Y        LRY KV+
Sbjct: 482 RDYYGVFPLRGKLLNVREATHKQILENQEINNLIKILGLQYKKKYNTDEDMRTLRYGKVM 541

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599
           IMTD D DG+HI  LL+ F +    +L+ +  L     P+ +  +  +++  +     ++
Sbjct: 542 IMTDQDQDGSHIKGLLINFIHYNWPELLRRDFLEEFITPIVKAKKRNETLSFYSLPEFEE 601

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
                  H     +I  +KGLG   + + KE   D  +   +R    K          + 
Sbjct: 602 WKSNTPNH--RTYQIKYYKGLGTSDSKEAKEYFSDMARHR-IRFRY-KGPEDDDHIVLAF 657

Query: 660 NKLMGTKADERFKFIQE 676
           +K      + R +++  
Sbjct: 658 SK---KHIEHRKEWLTN 671


>gi|106734223|gb|ABF82588.1| DNA topoisomerase IV subunit beta [Exiguobacterium sp. 5138]
          Length = 496

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 197/498 (39%), Positives = 285/498 (57%), Gaps = 14/498 (2%)

Query: 60  MRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119
            RPGMYIG T  K LHHL  E++DN++DE +AGY + I+V+++    + V DNGRGIPV+
Sbjct: 1   KRPGMYIGSTASKGLHHLVWEIVDNSIDEALAGYCDTIKVTIEPGNSILVEDNGRGIPVD 60

Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179
              K   +  +E+ILT LHAGGKF    Y++SGGLHGVG SVVNALS +L V V R   +
Sbjct: 61  IQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTKLEVFVKRNEKL 119

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
           + Q + RG+P++ LE       + GT I F PD +IF +   +D   L    +  A+L+ 
Sbjct: 120 YYQAYHRGVPVADLEIIG-TSEETGTMIRFFPDDEIFQETLEYDYDLLATRLRELAFLNK 178

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            +    + D+        P    F++ GG+K+Y++    ++ ++  E       + G   
Sbjct: 179 GLTIEITDDR-----ADEPITRSFHYEGGIKSYVEHLNRSKEVVHEEPVYVHGNRDGI-- 231

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS-- 356
             VE A+ + +     I S+ N I T EGGTHE+G + ALTR I  YA+     +     
Sbjct: 232 -EVEVALQYNDGFAANIYSFTNNIPTHEGGTHETGFKTALTRVINDYAKKFGLMKEADGT 290

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           +  +D+      I+S+    P+F GQTKTKL + DA+   +      F+ ++++NP  A 
Sbjct: 291 LSGEDVREGMTAIVSIKHPNPQFEGQTKTKLGNSDARTATDTLFSSAFEQFMMENPTSAR 350

Query: 417 KLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            ++E  ++        +R +    RK  +    LPGKLADCS   A  +E++IVEGDSAG
Sbjct: 351 AIVEKGMMASRARMAAKRARELTRRKGVLEVSSLPGKLADCSSRDATISEIYIVEGDSAG 410

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           GSAK  R+R  QA+LP+RGKILNV  A  +KI  + +I  ++ ALG    S++  E  RY
Sbjct: 411 GSAKSGRDRHFQAILPIRGKILNVEKARLDKILGSNEIRTIITALGTSIGSEFNIEKARY 470

Query: 536 EKVIIMTDADVDGAHIAS 553
            KVIIMTDADVDGAHI +
Sbjct: 471 HKVIIMTDADVDGAHIRT 488


>gi|195031277|ref|XP_001988321.1| GH10628 [Drosophila grimshawi]
 gi|193904321|gb|EDW03188.1| GH10628 [Drosophila grimshawi]
          Length = 1486

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 147/687 (21%), Positives = 259/687 (37%), Gaps = 73/687 (10%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD---------------------- 70
                 S    Y   S      LE + +RP  YIG  +                      
Sbjct: 20  NGKNAMSIEQMYQKKS-----QLEHILLRPDSYIGSVEFTKELMWVLDLEKNRMVQREIS 74

Query: 71  -EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNK 127
               L+ +F E++ NA D        N I+V +D     +++ +NG+GIPV  H K  N 
Sbjct: 75  FVPGLYKIFDEILVNAADNKQRDKSMNTIKVDIDPEKNIVSIWNNGQGIPVTMH-KEENM 133

Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187
               +I   L     +++   +++GG +G G  + N  SD   V  + +    S K + G
Sbjct: 134 YVPTMIFGHLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSDSFTVETSTKQFRKSFKQTWG 193

Query: 188 --IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLLKMTQSKAYLSGRVKT 243
             +  +     +       TRITF PD   F          A + +     A  +  V  
Sbjct: 194 NNMGKAGDPIIKDSSGTDFTRITFSPDLTKFKMDSLDKDIVALMSRRAYDVAASTKGVSV 253

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
             +  K   +              G K Y+   ++N    S +      E  G      E
Sbjct: 254 FLNGTKVPVK--------------GFKDYIDLFVKNDDEDSGQPIKVVYEACGD---RWE 296

Query: 304 WAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLM 363
            A+   E   +  S+ N+I T +GG H   +   + + + +     +NK  ISI    + 
Sbjct: 297 VAVCPSERGFQQVSFVNSIATTKGGRHVDHVVDNVIKQLIE-VLKKKNKNGISIKPFQVR 355

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                 ++  I  P F  QTK  +         +  L D F   + +       ++E V+
Sbjct: 356 NHLWIFVNCLIENPTFDSQTKENMTLQAKSFGSKCVLSDKFIGSVSK-----AGIVESVL 410

Query: 424 ERSEERLRRRKQREVNRKTAIRKLRLPGKLAD-CSQNIAHGTELFIVEGDSAGGSAKQA- 481
             ++ + +    +   +K++  K     + A+      +    L + EGDSA   A    
Sbjct: 411 AWAKFKAQNDIAKTGGKKSSKIKGIPKLEDANEAGTKNSIQCTLILTEGDSAKSLAVSGL 470

Query: 482 --RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED----LRY 535
               R+   V PLRGK+LNV  A  +++  N +I +L + +G + + +Y   D    LRY
Sbjct: 471 GVIGRNYYGVFPLRGKLLNVREATFKQLTENAEINNLCKIIGLQYKKKYLSIDDLKTLRY 530

Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEE 595
            KV+IMTD D DG+HI  LL+ F +    +L+    L     P+ + T+  + +  +   
Sbjct: 531 GKVMIMTDQDQDGSHIKGLLINFIHTNWPELLRLPFLEEFITPIVKATKKNEELSFYSMP 590

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             ++   +   H      I  +KGLG   + + KE   D  +  +L  + +  ++     
Sbjct: 591 EFEEWKMDTANHHT--YNIKYYKGLGTSTSKEAKEYFQDMERHRIL-FKYDGQVDD---- 643

Query: 656 QDSINKLMGTKADERFKFIQERASFID 682
            + +        D R  ++      + 
Sbjct: 644 DNIVMAFAKKHVDSRKTWLTNHMDEVK 670


>gi|307211209|gb|EFN87409.1| DNA topoisomerase 2 [Harpegnathos saltator]
          Length = 1492

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 140/683 (20%), Positives = 264/683 (38%), Gaps = 74/683 (10%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE--------------------- 71
                ++    Y   S      LE + +RP  YIG  +                      
Sbjct: 12  SGPKQKTIEGIYQKKS-----QLEHILLRPDTYIGSVEPVTEMMWIFDKEKDMMVQKDIK 66

Query: 72  --KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNK 127
               L+ +F E++ NA D        ++I++ +D  N  ++V +NG+GIPV  H K  N 
Sbjct: 67  YVPGLYKIFDEILVNAADNKQRDPKMDMIKIDIDSENNTISVWNNGKGIPVVIH-KEENM 125

Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187
               +I   L     +D+   +++GG +G G  + N  S    V  A +    S K + G
Sbjct: 126 YVPTMIFGHLLTSSNYDDEEEKVTGGRNGYGAKLCNIFSHRFTVETATKEYRKSLKQTWG 185

Query: 188 --IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLLKMTQSKAYLSGRVKT 243
             +  +   + ++   +  T++TF PD   F  +       A + +     A  S  VK 
Sbjct: 186 NNMGKASEPRIKEYHGEDFTKVTFSPDLSKFKMQSLDEDIVALMSRRAYDVAASSKGVKV 245

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
             +  +   + +              K Y+   ++ +            E         E
Sbjct: 246 YLNGTRVPVKNF--------------KDYIDFYIKGKEDDVGNPLKIIYE---NCGPRWE 288

Query: 304 WAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLM 363
            AI   ++  +  S+ N+I T +GG H   +   + + + +     +NK  ++I    + 
Sbjct: 289 VAITLSDKGFQQMSFVNSIATTKGGRHVDHVTELIVKQLIE-TLKKKNKAGVAIKPFQIK 347

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                 ++  I  P F  QTK  +         +  L D F   + +       ++E V+
Sbjct: 348 NHLWIFINCLINNPTFDSQTKENMTLQAKSFGSKCTLTDKFIANITK-----IGIVEAVL 402

Query: 424 ERSEERLRRRKQR--EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ- 480
             ++ +   + Q+    +++  ++ +       D     +    L + EGDSA   A   
Sbjct: 403 TWAKFKADSQLQKLGPKSKQRKLQGIPKLEDANDAGTGKSLECTLILTEGDSAKTMAVSG 462

Query: 481 --ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED----LR 534
             +  R    + PLRGK+LNV  A  ++I  N +I +L++ LG + + +Y   D    LR
Sbjct: 463 IASIGRDKYGIFPLRGKMLNVREATHKQILENAEINNLIKILGLQYKKKYETRDDLKTLR 522

Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDE 594
           Y K++IMTD D DG+HI  LL+ F +     L++   +     P+ + T+G + +     
Sbjct: 523 YGKMMIMTDQDQDGSHIKGLLINFIHHNWPSLLKLNFIEEFITPIVKATKGNQQLSFFSL 582

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
              +   +E         +I  +KGLG   A + KE   +  +   +R          ++
Sbjct: 583 PEFEMWKKE--TDNFHTYKIKYYKGLGTSTAKEAKEYFENMARHR-IRFRY-DGEQDDQN 638

Query: 655 TQDSINKLMGTKADERFKFIQER 677
              + +K      D+R  ++   
Sbjct: 639 IIMAFSK---KCVDQRKDWLMNH 658


>gi|149234581|ref|XP_001523170.1| DNA topoisomerase 2 [Lodderomyces elongisporus NRRL YB-4239]
 gi|146453279|gb|EDK47535.1| DNA topoisomerase 2 [Lodderomyces elongisporus NRRL YB-4239]
          Length = 1492

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 144/716 (20%), Positives = 269/716 (37%), Gaps = 69/716 (9%)

Query: 14  PQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD--- 70
            Q +G       + +   +   ++ +AS+ Y     + L  LE +  RP  YIG  +   
Sbjct: 53  DQVEGGGTVASVAAKAAKAAKASSTNASETY-----QKLSQLEHILKRPDTYIGSVEKTR 107

Query: 71  --------------------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLT 108
                                  L+ +F E++ NA D  I       I+V +D  N  + 
Sbjct: 108 TEMWCFDVESESMKFQEVTIVPGLYKIFDEILVNAADNKIRDPSMKNIKVKIDPENNVIQ 167

Query: 109 VVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDE 168
           V+++G+GIPVE H K       E+I   L     +D+   +++GG +G G  + N  S +
Sbjct: 168 VMNDGKGIPVEIHTK-EKMYIPELIFGNLLTSSNYDDDQKKVTGGRNGFGAKLCNIFSTQ 226

Query: 169 LHVTVAR--QNTIFSQKFSRGIPLSPLEKKEK-VRNKRGTRITFRPDPKIFGDK--AGFD 223
             V  A      ++ Q ++  +      K       K  T+ITF PD + FG        
Sbjct: 227 FEVETADLNTGKLYKQVWTDNMTKVGKPKITTLKTKKEYTKITFMPDLQKFGMDSLDEDL 286

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
            + L +                +  +     +    +             +   E++   
Sbjct: 287 LSVLRRRVYDLCGTVRNCNIYLNDKRLSVNSFKAYVEMYVKAIRERSPEPEGDAESKPAT 346

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA-LTRGI 342
           ++ +               E A A  + N    S+ N+I T  GGTH   +    +T+ +
Sbjct: 347 TTIVH-------EVFNDRWEVAFAVSDGNFNQVSFVNSIATTAGGTHVKYVSDQIITKLV 399

Query: 343 KKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRD 402
           +  ++  + K+ + I   ++  +    ++  I  P F  QTK +L +  +Q   +     
Sbjct: 400 ETLSKREKGKKKLMIKPQEVRDNMFIFINSLIENPAFTSQTKEQLTTKPSQFGGKEKFIA 459

Query: 403 PFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAH 462
             +             +   I  + E    +K     +     ++ L       +++   
Sbjct: 460 TENLINRILKTGIADKI-RAIANANEDKALQKADGSKKLRIKNQVNLVDANKAGTKDGLK 518

Query: 463 GTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
            T L + EG SA   A        R      PLRGK+LNV  A ++++  N +I  L Q 
Sbjct: 519 CT-LILTEGLSALNLAVAGLTVVGRDYYGCFPLRGKLLNVREASADQVSKNIEINALKQI 577

Query: 520 LGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLI 575
           +G + +  Y +E+   LRY  ++IMTD D DG+HI  L++ F       L++    L   
Sbjct: 578 IGLQHKKVYTQENIKSLRYGHIMIMTDQDQDGSHIKGLIINFLETSFPGLLDIPGFLLQF 637

Query: 576 SPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
             P+ ++T       K +  +     +   E   ++ +       +KGLG     + +E 
Sbjct: 638 ITPIVKVTVNGRGAKKVIPFYSMPEFEAWREGEGQNCR--WTQKYYKGLGTSTPLEAREY 695

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI--DDVG 685
               ++  L R               + +K    KAD+R +++Q   +F+  D++ 
Sbjct: 696 FTALDRH-LKRFH-ALQGEDASCIDLAFSK---KKADDRKEWLQ---NFVPGDNLD 743


>gi|91201871|emb|CAJ74931.1| similar to DNA gyrase subunit B [Candidatus Kuenenia
           stuttgartiensis]
          Length = 613

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 195/664 (29%), Positives = 308/664 (46%), Gaps = 74/664 (11%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYA 94
               Y    I+ L+  E +R+RPGMYIG      + +  ++ L  EV+DN++DE + G+ 
Sbjct: 2   VKSAYTEEHIKSLDWKEHIRLRPGMYIGKLGDGSSMDDGIYVLVKEVVDNSIDEYVMGFG 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             IE+ +     +TV D GRGIP+           +   +  ++ GGK+D+  ++ S GL
Sbjct: 62  KTIEIKI-SEHEVTVRDYGRGIPLGK---------VFDCVAKINTGGKYDSEAFQKSVGL 111

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           +G+G   VNALS    V   R     S +FSRG         EK  ++ GT I F PD K
Sbjct: 112 NGIGTKAVNALSGYFMVQSIRDGNAKSVEFSRGNMTKDFPV-EKTSHRNGTLIQFIPDEK 170

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   F    L     + AYL+  +   ++  K  +E              GL   L 
Sbjct: 171 IFKNYR-FIPDFLENQIWNYAYLNAGLTIDFNGRKIHSE-------------NGLFDLLT 216

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
            K +  +L    I +            +E+A    ++   E  S+ N   T +GGTH + 
Sbjct: 217 RKTDPETLRYPIIHS--------RDRDIEFAFTHADQYGEEYYSFVNGQHTTQGGTHLAA 268

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL--- 390
            R A+ R ++++ +           + D+  S VG +SV I+EP F  QTKTKL S+   
Sbjct: 269 FREAIVRTVREFYK-------KDFDAADIRASIVGAISVRIQEPVFESQTKTKLGSINIS 321

Query: 391 ----DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
                 +  V + ++   D YL ++   A KLL+ +++   ER      +++  + A + 
Sbjct: 322 PDGISIRAFVNDYVKKELDDYLHKHNDVAEKLLKRILQSERERKEIAGIKKLANQRAKKA 381

Query: 447 LRLPGKLADCSQNIA-------HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
                KL DC  +         + + +FI EGDSA GS  +ARN   QA+  LRGK LN 
Sbjct: 382 NLHNKKLRDCRIHYNSEKNEQRYESSIFITEGDSASGSITKARNVETQAIFSLRGKPLNC 441

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
                + +  N++   L  AL          E+LRY  VII TDADVDG HI  LL+TFF
Sbjct: 442 FGLTKKVVYENEEFNLLQHALNIE----DGIENLRYNNVIIATDADVDGMHIRLLLMTFF 497

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
            Q   DL++  H++++  PLFR+    +++Y ++EE K   + +  K+     EI+RFKG
Sbjct: 498 LQFFSDLVKNGHVYILETPLFRVRNKNETMYCYNEEEKLAAMNKMGKN----PEITRFKG 553

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679
           LGE+  ++  +         L  + + +          +++  MG    +R  FI E  S
Sbjct: 554 LGEISPNEFGQFIG--ENIRLQPLVLGQ----KDSIVQTLSYYMGKNTPDRQTFIIENLS 607

Query: 680 FIDD 683
              +
Sbjct: 608 VEKN 611


>gi|270004896|gb|EFA01344.1| topoisomerase II [Tribolium castaneum]
          Length = 1547

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 136/677 (20%), Positives = 261/677 (38%), Gaps = 74/677 (10%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----------------------EKAL 74
           Q+  + Y   S      LE + +RP  YIG  +                          L
Sbjct: 31  QTIEETYQKKS-----QLEHILLRPDTYIGSVEKVDENMWVYDRDTEMIIQKNISYVPGL 85

Query: 75  HHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
           + +F E++ NA D        + I++ ++  +  ++V +NG+GIPV  H K  N     +
Sbjct: 86  YKIFDEILVNAADNKQRDNTMDCIKIEINQDDNVISVWNNGQGIPVAMH-KSENMYVPTM 144

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG--IPL 190
           I   L     +++   +++GG +G G  + N  S +  V  A +      K   G  +  
Sbjct: 145 IFGHLLTSSNYNDKEEKVTGGRNGYGAKLCNIFSTKFTVETATKEYKRHFKQVWGNNMTK 204

Query: 191 SPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
           +   K +    +  T+ITF PD              + + +     A  +  VK   +  
Sbjct: 205 ASEPKIKDHFGEDFTKITFSPDLVKFKMEKLEDDIVSLMCRRAFDVAASTRGVKVFLNGK 264

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +   + +              K Y+    + +    +E      E         E A+  
Sbjct: 265 RVPVKNF--------------KDYVDFFTKGKDEDGNEKCKVVYE---VCNERWEVAMTL 307

Query: 309 CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVG 368
            +   +  S+ N+I T +GG H   +   + + I +     +NK  ++I    +      
Sbjct: 308 SDRGFQQMSFVNSIATTKGGRHVDYVTEMIVKQIIE-VLKKRNKGGVAIKPFQVKNHMWI 366

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
            ++  I  P F  QTK  +         +  L + F   +V+     + ++E V+  ++ 
Sbjct: 367 FINCLIVNPTFDSQTKENMTLQAKSFGSKCTLSEKFITQVVK-----SGIVESVLSWAKF 421

Query: 429 RLRRRKQREV--NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RN 483
           + +   +++    +++ ++ +       +          L + EGDSA   A        
Sbjct: 422 KAQTELEKKTAGKKQSKLKGIPKLEDANEAGTKNGLRCTLILTEGDSAKSLAVSGLGVIG 481

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR----EEDLRYEKVI 539
           R    V PLRGK+LNV  A  ++I  NQ+I +L++ LG + + +Y        LRY KV+
Sbjct: 482 RDYYGVFPLRGKLLNVREATHKQILENQEINNLIKILGLQYKKKYNTDEDMRTLRYGKVM 541

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599
           IMTD D DG+HI  LL+ F +    +L+ +  L     P+ +  +  +++  +     ++
Sbjct: 542 IMTDQDQDGSHIKGLLINFIHYNWPELLRRDFLEEFITPIVKAKKRNETLSFYSLPEFEE 601

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
                  H     +I  +KGLG   + + KE   D  +   +R    K          + 
Sbjct: 602 WKSNTPNH--RTYQIKYYKGLGTSDSKEAKEYFSDMARHR-IRFRY-KGPEDDDHIVLAF 657

Query: 660 NKLMGTKADERFKFIQE 676
           +K      + R +++  
Sbjct: 658 SK---KHIEHRKEWLTN 671


>gi|195580167|ref|XP_002079927.1| Top2 [Drosophila simulans]
 gi|194191936|gb|EDX05512.1| Top2 [Drosophila simulans]
          Length = 1133

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 144/681 (21%), Positives = 253/681 (37%), Gaps = 73/681 (10%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----------------------EKALH 75
           S    Y   S      LE + +RP  YIG  +                          L+
Sbjct: 9   SIEQMYQKKS-----QLEHILLRPDSYIGSVEFTKELMWVYDNSQNRMVQKEISFVPGLY 63

Query: 76  HLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEII 133
            +F E++ NA D        N I++ +D     ++V +NG+GIPV  H K        +I
Sbjct: 64  KIFDEILVNAADNKQRDKSMNTIKIDIDPERNIVSVWNNGQGIPVTMH-KEQKMYVPTMI 122

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG--IPLS 191
              L     +++   +++GG +G G  + N  S    V  A +    S K + G  +  +
Sbjct: 123 FGHLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSTSFTVETATKEYRKSFKQTWGNNMGKA 182

Query: 192 PLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
              + +       TRITF PD              A + +     A  S  V    + +K
Sbjct: 183 SDVQIKDFNGTDYTRITFSPDLAKFKMDRLDEDIVALMSRRAYDVAASSKGVSVFLNGNK 242

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
                +              K Y+   +++    S        E         E A    
Sbjct: 243 LAVRNF--------------KDYIDLHIKSTDDDSGPPIKIVHE---VANERWEVACCPS 285

Query: 310 EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGI 369
           +   +  S+ N+I T +GG H   +   L + + +     +NK  I+I    +       
Sbjct: 286 DRGFQQVSFVNSIATYKGGRHVDHVVDNLIKQLLE-VLKKKNKGGINIKPFQVRNHLWVF 344

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           ++  I  P F  QTK  +         +  L D F      N +  + ++E V+  ++ +
Sbjct: 345 VNCLIENPTFDSQTKENMTLQQKGFGSKCTLSDKFI-----NNMSKSGIVESVLAWAKFK 399

Query: 430 LRRRKQREVNRKTAIRKLRLPGKLAD-CSQNIAHGTELFIVEGDSAGGSAKQA---RNRS 485
            +    +   RK++  K     + A+      +    L + EGDSA   A        R 
Sbjct: 400 AQNDIAKTGGRKSSKIKGIPKLEDANEAGGKNSINCTLILTEGDSAKSLAVSGLGVIGRD 459

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED----LRYEKVIIM 541
              V PLRGK+LNV  A  +++  N ++ +L + +G + + +Y  ED    LRY KV+IM
Sbjct: 460 LYGVFPLRGKLLNVREANYKQLSENAEVNNLCKIIGLQYKKKYLTEDDLKTLRYGKVMIM 519

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           TD D DG+HI  LL+ F +    +L+    L     P+ + T+  + +  +     ++  
Sbjct: 520 TDQDQDGSHIKGLLINFIHTNWPELLRLPFLEEFITPIVKATKKKEELSFYSLPEFEEWK 579

Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
            +   H      I  +KGLG   + + KE   D  +  +L           +    + +K
Sbjct: 580 NDTANHHT--YNIKYYKGLGTSTSKEAKEYFQDMQRHRILF--KYDGSVDDESIIMAFSK 635

Query: 662 LMGTKADERFKFIQERASFID 682
                 + R  ++      + 
Sbjct: 636 ---KHIESRKVWLTNHMDEVK 653


>gi|146414654|ref|XP_001483297.1| hypothetical protein PGUG_04026 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1400

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 157/726 (21%), Positives = 277/726 (38%), Gaps = 66/726 (9%)

Query: 2   TDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMR 61
           +D S+D   +   +S+G       +       A A   ASD Y     + L  LE +  R
Sbjct: 17  SDASLDFTPSSSVKSKGKVPLRDSTNTTAQPSAPATGDASDQY-----QKLSQLEHILKR 71

Query: 62  PGMYIGGTD-----------------------EKALHHLFSEVIDNAMDEVIAGY-ANLI 97
           P  YIG  +                          L+ +F E++ NA D  I       I
Sbjct: 72  PDTYIGSVEKTGVEMWSFDAATESMIYKEVHIVPGLYKIFDEILVNAADNKIRDPSMRNI 131

Query: 98  EVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           +V++D  N  + V+++G+GIP+E H K       E+I   L     +D+   +++GG +G
Sbjct: 132 KVNIDAENNTILVMNDGKGIPIEIHKK-EKIYIPELIFGNLLTSSNYDDDEKKVTGGRNG 190

Query: 157 VGISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEK-VRNKRGTRITFRPDP 213
            G  + N  S E  +  A    + ++ Q ++  +      K  K    K  T++TF+PD 
Sbjct: 191 YGAKLCNIFSTEFVLETADLNTSQVYKQTWTNNMANLTKPKITKLKSKKEYTKVTFKPDL 250

Query: 214 KIFGDKA--GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             F  +       + L +                +  K    +      E +      ++
Sbjct: 251 SKFHMEMLDDDILSVLRRRVYDLCGTVKDCNIYLNDKKLSI-RNFKSYVEMYVNAIRERS 309

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHE 331
                 E  +   S I               E A A  + +    S+ N+I T  GGTH 
Sbjct: 310 PDPVAPEGETRNYSTIVH------EVFNDRWEVAFAVSDGSFNQVSFVNSIATTSGGTHV 363

Query: 332 SGLRVA-LTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
             +    +T+ I    +  + K+ ++I   ++  +    ++  I  P F  QTK +L + 
Sbjct: 364 KYVSDQIITKLIDALTKKEKGKKKLNIKPQEVRNNMFVFINCLIENPAFTSQTKEQLTTR 423

Query: 391 DAQRTVENALRDPFDH-YLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
            AQ   +   +      ++ +    +       I  + E     K     +     +++L
Sbjct: 424 VAQFGGKPLEKIVISDQFIAKILKTSIADKIRTIVNANEDKEMLKADGSRKSRIKNQVKL 483

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEK 506
                  +    +   L + EGDSA   A        R      PLRGK+LNV  A  E+
Sbjct: 484 VDANKAGT-KEGYKCTLILTEGDSAMPLAVAGLTVVGRDYYGCFPLRGKLLNVREASIEQ 542

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +  N +I  + Q +G + + +Y  E+   LRY  ++IMTD D DG+HI  L++ F     
Sbjct: 543 VSKNAEINSIKQIMGLQHKKRYTPENIKSLRYGHIMIMTDQDQDGSHIKGLIINFLETSF 602

Query: 564 YDLIEQ-KHLFLISPPLFRIT---QGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
             L+E    L     P+ ++T   +G  + +  ++    +K  E        K +   FK
Sbjct: 603 PGLLEIPGFLLEFITPIVKVTITGRGNHRVIPFYNMPEFEKWRETEGTTC--KWKHKYFK 660

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ--E 676
           GLG  L S+ +E     ++       +       +    + +K    KADER  ++Q   
Sbjct: 661 GLGTSLESEGREYFAALDRHMKSFHALQDG--DSQYIDMAFSK---KKADERKDWLQAFR 715

Query: 677 RASFID 682
             + +D
Sbjct: 716 PGTHLD 721


>gi|195438268|ref|XP_002067059.1| GK24224 [Drosophila willistoni]
 gi|194163144|gb|EDW78045.1| GK24224 [Drosophila willistoni]
          Length = 1453

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 138/670 (20%), Positives = 252/670 (37%), Gaps = 68/670 (10%)

Query: 50  RILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDNAM 86
           +    LE + +RP  YIG  +                          L+ +F E++ NA 
Sbjct: 18  QKKTQLEHILLRPDSYIGSVEYTKELMWVYDFENNRMVQREISFVPGLYKIFDEILVNAA 77

Query: 87  DEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144
           D        N I++ +D     +++ +NG+GIPV  H K        +I   L     ++
Sbjct: 78  DNKQRDKSMNAIKIDIDAEKNVISIWNNGQGIPVTMH-KEQKMYVPTMIFGHLLTSSNYN 136

Query: 145 NSTYEISGGLHGVGISVVNALSDE--LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           +   +++GG +G G  + N  S    L     +    F Q ++  +  +     +     
Sbjct: 137 DDEKKVTGGRNGYGAKLCNIFSTSFTLETATKQYKKSFQQTWANNMGKASEANIKDFNGT 196

Query: 203 RGTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
             TRITF PD              A + +     A  +  V    + +K   + +     
Sbjct: 197 DFTRITFSPDLSKFKMEKLDEDIVALMSRRAFDVAASTKGVSVFLNGNKLSVKNF----- 251

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCN 320
                    K Y+   ++N+   S +      E  G      E A    +   +  S+ N
Sbjct: 252 ---------KDYIDLHIKNQDSDSGQPIKVVYEACGE---RWEVACCPSDRGFQQVSFVN 299

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFA 380
           +I T +GG H   +   + + + +     +NK  I+I    +       ++  I  P F 
Sbjct: 300 SIATYKGGRHVDHVVDGVIKQLIE-VLKKKNKGGINIKPFQVRNHLWIFVNCLIENPTFD 358

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
            QTK  +         +  L + F        +  + ++E V+  ++ + +    +   R
Sbjct: 359 SQTKENMTLQAKSFGSKCTLSEKFIA-----NVSKSGIVESVLAWAKFKAQNDIAKTGGR 413

Query: 441 KTAIRKLRLPGKLAD-CSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKI 496
           K+   K     + A+      +    L + EGDSA   A        R+   V PLRGK+
Sbjct: 414 KSGKIKGIPKLEDANEAGGKNSIQCTLILTEGDSAKSLAVSGLGVIGRNYYGVFPLRGKL 473

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED----LRYEKVIIMTDADVDGAHIA 552
           LNV  A  +++  N +I +L + +G + + +Y  ED    LRY KV+IMTD D DG+HI 
Sbjct: 474 LNVREANFKQLTENAEINNLCKIIGLQYKKKYLTEDDLKTLRYGKVMIMTDQDQDGSHIK 533

Query: 553 SLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612
            LL+ F +    +L+    L     P+ + T+  + +  +     ++   +   H     
Sbjct: 534 GLLINFIHTNWPELLRLPFLEEFITPIVKATKKNEELSFYSLPEFEEWKMDTPNHAT--Y 591

Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
            I  +KGLG   + + KE   D  +  +L            +   + +K      D R  
Sbjct: 592 HIKYYKGLGTSTSKEAKEYFQDMERHRILF--KYDGQADDDNIVMAFSK---KHVDSRKT 646

Query: 673 FIQERASFID 682
           ++      + 
Sbjct: 647 WLTNHMDEVK 656


>gi|18369808|dbj|BAB84099.1| DNA topoisomerase II [Aspergillus candidus]
          Length = 1096

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 147/676 (21%), Positives = 276/676 (40%), Gaps = 66/676 (9%)

Query: 47  SSIRILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVID 83
           S  + L  LE +  RP  YIG  +                          L+ +F E++ 
Sbjct: 2   SKYQKLTQLEHIIKRPDTYIGSIEKATQQMWVYDSATESMEFREVTFVPGLYKIFDEIVV 61

Query: 84  NAMDEVIAG-YANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141
           NA D        + I +++D   G ++V +NGRGIP+E H K       E+I   L    
Sbjct: 62  NAADNKQNDEKMDEIRITIDRESGVISVWNNGRGIPIEIHSK-EKIYVPELIFGHLLTSS 120

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDEL--HVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
            +D+   +++GG +G G  + N  S E       +RQ   + Q ++  +      K    
Sbjct: 121 NYDDGQMKVTGGRNGFGAKLCNVFSTEFSIETVDSRQGKKYVQTWTDNMSKVGKAKITSA 180

Query: 200 RNKRGTRITFRPDPKIF-GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
           + +  T++TF+PD K F  +    D   L+K        + +V    +  +         
Sbjct: 181 KGEDYTKVTFKPDYKKFGMEGMDDDFEALVKRRVYDLAGTAKVAVKLNGSRIPVRN---- 236

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSY 318
                 F   ++ Y +   + R   ++   +         R  V +A++  + + +  S+
Sbjct: 237 ------FKKYMEMYTKAIKKERGEEAANDKSEIVTASPDPRWEVGFAVS--DGSFQQVSF 288

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPE 378
            N+I T  GG+H + +   +   + + A   +NK+  ++ +  +       ++  I  P 
Sbjct: 289 VNSIATTSGGSHVNYIADQICNRLAE-AVKKKNKQGATLKASQIRNHIFIFVNALIVNPA 347

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
           F  QTK +L +  +Q   +  L D F   +++     T+++  ++  +E++  +  ++  
Sbjct: 348 FTSQTKEQLTTKPSQFGSKCILDDDFYKKVLK-----TEVMTNILHFAEKKADQLLKKTD 402

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGK 495
             K +                  H   L + EGDSA G A   R         V PLRGK
Sbjct: 403 GGKRSRMNNPKLTDANKAGTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGK 462

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASL 554
           +LNV  A  ++I  N +I ++   +G + + +Y +   LRY  ++IMTD D DG+HI  L
Sbjct: 463 LLNVRDASIDQISKNAEIQNIKSFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGL 522

Query: 555 LLTFFYQEMYDLIEQK-HLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHG 608
           L+ F   +   L++    L     P+ ++ +G     TKS         ++  EE K   
Sbjct: 523 LINFLQVQFPSLLKIPEFLIEFITPIVKVWKGDPKNPTKSKSFFTMPEYEQWKEEHKND- 581

Query: 609 KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKAD 668
               +   +KGLG       +    D ++       +    +  +    + +K    KAD
Sbjct: 582 -RAWQHKYYKGLGTSTTEDAQIYFRDLDRHLKEFHTMQD--HEAQLIDLAFSK---KKAD 635

Query: 669 ERFKFIQER--ASFID 682
           ER +++++    +F+D
Sbjct: 636 ERKEWLRQYKPGTFLD 651


>gi|18369816|dbj|BAB84103.1| DNA topoisomerase II [Penicillium chrysogenum]
          Length = 1423

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 148/688 (21%), Positives = 265/688 (38%), Gaps = 71/688 (10%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----------------------E 71
             +  AS+ Y     + L  LE +  RP  YIG T+                        
Sbjct: 1   GKSGDASEKY-----QKLTQLEHIIKRPDTYIGSTERTTQQMWVYNSGTELMEFRDVSFV 55

Query: 72  KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKST 129
             L+ +F E++ NA D        N I +++D   G ++V +NGRGIP+E H K      
Sbjct: 56  PGLYKIFDEIVVNAADNKHNDSSMNEIRITIDREAGEISVWNNGRGIPIEIHSK-EKIYV 114

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDE--LHVTVARQNTIFSQKFSRG 187
            E+I   L     +D+S  +++GG +G G  + N  S E  L    +RQ   + Q ++  
Sbjct: 115 PELIFGHLLTSSNYDDSQQKVTGGRNGFGAKLCNVFSTEFTLETQDSRQKKKYKQTWTEN 174

Query: 188 IPLSPLEKKEKVRNKRGTRITFRPDP-KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           +      K    +    T++TF+PD  K   +    D   L+K        +  V    +
Sbjct: 175 MTKMGKAKITDAKGDDYTKVTFKPDFAKFGMEGIDDDFESLVKRRVYDLAGTAGVAVKLN 234

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +     +        Y     K   + + ++      EI T             E   
Sbjct: 235 NTRVPIRSFRK------YMEMYTKAIRKERGDDGPPTKDEIITCS------PDPRWEIGF 282

Query: 307 AWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISA 366
           A  + + +  S+ N+I T  GGTH + +   +   +       +NK   ++ S  +    
Sbjct: 283 AVSDGSFQQVSFVNSIATTSGGTHVNYIADQICTRLAD-QVKKKNKSGATLKSAQIRNHI 341

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
              +   I  P F  QTK +L +  +Q   +  L + F   +++     T+++  ++  +
Sbjct: 342 FIFVKALIVNPAFTSQTKEQLTTKASQFGSKCPLDEDFYKKVLK-----TEVMSNILHFA 396

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN--- 483
           E++     ++    +                        L + EG+SA G A   R    
Sbjct: 397 EQKADPDLKKGDTGRRTRMNNPKLVDANKAGTREGRHCTLILTEGESAKGLAMAGRAVVG 456

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMT 542
                V PLRGK+LNV  A  ++I  N +I  +   +G + + +Y +   LRY  ++IMT
Sbjct: 457 PDLFGVFPLRGKLLNVRDASFDQISKNVEIQSIKNFIGLQHKKEYTDTKGLRYGHLMIMT 516

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQK-HLFLISPPLFRITQG-----TKSVYAHDEEH 596
           D D DG+HI  LL+ F   +   L++    L     P+ ++ +G     TK         
Sbjct: 517 DQDHDGSHIKGLLINFLQAQFPSLLKIPEFLIEFITPIIKVWKGDPKNPTKQKSFFTMPE 576

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
             +  E  +   +   E   +KGLG       +    D ++       +          +
Sbjct: 577 HDEWREAHQ--HERGWEHKYYKGLGTSTTEDAQVYFRDLDRHLKEFHTMQDGE--AGLIE 632

Query: 657 DSINKLMGTKADERFKFIQE--RASFID 682
            + +K    KADER +++++    +F+D
Sbjct: 633 LAFSK---KKADERKEWLRQFKPGTFLD 657


>gi|332027283|gb|EGI67367.1| DNA topoisomerase 2 [Acromyrmex echinatior]
          Length = 1552

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 136/699 (19%), Positives = 269/699 (38%), Gaps = 74/699 (10%)

Query: 17  QGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE----- 71
           +        +G          ++    Y   S      LE + +RP  YIG  +      
Sbjct: 45  RTKMSTAVANGAGNSKSVTKQKTIEGIYQKKS-----QLEHILLRPDTYIGSVETITEMM 99

Query: 72  ------------------KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVD 111
                               L+ +F E++ NA D        ++I++ +D  N  ++V +
Sbjct: 100 WVFDKEKEMMVQKDIKYVPGLYKIFDEILVNAADNKQRDPKMDMIKIDIDSENNTISVWN 159

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171
           NG+GIPV  H K  N     +I   L     +D+   +++GG +G G  + N  S    V
Sbjct: 160 NGKGIPVVIH-KEENMYVPTMIFGHLLTSSNYDDEEEKVTGGRNGYGAKLCNIFSHRFTV 218

Query: 172 TVARQNTIFSQKFSRG--IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARL 227
             A +      K + G  +  +   + ++   +  T++TF PD   F  +       + +
Sbjct: 219 ETATKEYKKCLKQTWGDNMGKASEPRIKEYFGEDFTKVTFSPDLSKFKMQSLDDDIVSLM 278

Query: 228 LKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEI 287
            +     A  +  VK   +  +   + +              K Y+   ++ +       
Sbjct: 279 SRRAYDVAASTKGVKVFLNGSRVPVKNF--------------KDYVDFYIKGKEDDIGNP 324

Query: 288 FTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
                E         E A+   ++  +  S+ N+I T +GG H   +   + + + +   
Sbjct: 325 LKIVYE---NCSPRWEVALTLSDKGYQQMSFVNSIATTKGGRHVDHVTELIVKQLIE-TL 380

Query: 348 LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
             +NK  ++I    +       ++  I  P F  QTK  +         + AL D F   
Sbjct: 381 KKKNKAGVAIKPFQIKNHMWIFVNCLINNPTFDSQTKENMTLQPKSFGSKCALSDKFITS 440

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQR--EVNRKTAIRKLRLPGKLADCSQNIAHGTE 465
           + +       ++E V+  ++ +   + ++    +++  +  +       D     +    
Sbjct: 441 ITK-----IGVVEAVLTWAKFKADSQLEKLGPKSKQRKLHGIPKLEDANDAGTAKSLECT 495

Query: 466 LFIVEGDSAGGSAKQ---ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           L + EGDSA   A     +  R    + PLRGK+LNV  A  ++I  N +I +L++ LG 
Sbjct: 496 LILTEGDSAKTMAVSGIASIGRDKYGIFPLRGKMLNVREATHKQILENAEINNLIKILGL 555

Query: 523 RTRSQY----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           + + +Y      + LRY K++IMTD D DG+HI  LL+ F +     L++   +     P
Sbjct: 556 QYKKKYETREDMKTLRYGKMMIMTDQDQDGSHIKGLLINFIHHNWPSLLKLNFIEEFITP 615

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           + + T+G++          ++  +E +       +I  +KGLG   A + KE   + ++ 
Sbjct: 616 IVKATKGSQVKSFFSLPEFEQWKKETENFHT--YKIKYYKGLGTSTAKEAKEYFENMSRH 673

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
             +R          ++   + +K      D+R  ++   
Sbjct: 674 R-IRFRY-DGEQDDQNIIMAFSK---KCVDQRKDWLMNH 707


>gi|329962707|ref|ZP_08300630.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides fluxus YIT 12057]
 gi|328529541|gb|EGF56444.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides fluxus YIT 12057]
          Length = 644

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 188/698 (26%), Positives = 315/698 (45%), Gaps = 84/698 (12%)

Query: 18  GSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEK 72
             +  +    E  D       ++S  Y   +IR L+ +E +R+R GMYIG       ++ 
Sbjct: 2   EDNNNMTLPLEEADHNITETSASSVEYTDDNIRHLDDMEHIRVRSGMYIGRLGDGSQNDD 61

Query: 73  ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
            ++ L  EV+DN++DE   G    IEV+++ +  ++V D GRGIP            +E 
Sbjct: 62  GIYVLLKEVMDNSIDEFKMGAGKRIEVTIEDSLRVSVRDYGRGIPQGK--------LVEA 113

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
           + + L+ GGK+D+  ++ S GL+GVGI  VNALS    V   R+  + +  F +G     
Sbjct: 114 V-SKLNTGGKYDSKAFKKSVGLNGVGIKAVNALSSRFEVRSYREGKVRTAIFEKG--TLL 170

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
            +  E    + GT I F PD  +F +   F    +  + ++  YL+  +   ++  + ++
Sbjct: 171 SDVTEDSAEENGTYIFFEPDATLFLNY-SFQNQFVETLLRNYTYLNTGLTFIYNGQRIVS 229

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
                   ++     GL   +  K E+                      +E A     + 
Sbjct: 230 RHGLEDLLKDNMTSEGLYDIIHLKGED----------------------IEIAFTHTNQY 267

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILS 371
             E  S+ N   T +GGTH++ L+  + R IK++          +    D+    V  ++
Sbjct: 268 GEEYYSFVNGQHTTQGGTHQTALKEHIARTIKEFYN-------KNQEYADIRNGLVAAIA 320

Query: 372 VFIREPEFAGQTKTKLVSLDA---------------QRTVENALRDPFDHYLVQNPIEAT 416
           + + EP F  QTKTKL S +                 + V + ++   D+YL +NP+ A 
Sbjct: 321 IDVEEPMFESQTKTKLGSNNMWPAAPQEHKPAGPTVNKYVGDFIKTEVDNYLHKNPLVAE 380

Query: 417 KLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN--------IAHGTELFI 468
            +L+ + +  +ER       ++ R+ A +      KL DC  +            + +FI
Sbjct: 381 VMLQKIQDSEKERKAIAGVTKLARERAKKANLHNRKLRDCRYHLSDGKGKDQEAESCIFI 440

Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528
            EGDSA GS  ++R+ + QAV  LRGK LN      + +  N++   L  AL      + 
Sbjct: 441 TEGDSASGSITKSRDVNTQAVFSLRGKPLNSYGLTKKVVYENEEFNLLQAALNIEDGIET 500

Query: 529 REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKS 588
               LRY KVI+ TDADVDG HI  L++TFF Q   DLI++ H++++  PLFR+    K+
Sbjct: 501 ----LRYNKVIVATDADVDGMHIRLLIITFFLQFFPDLIKKGHVYILQTPLFRVRNKKKT 556

Query: 589 VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648
            Y + E+ + K +EE   +     EI+RFKGLGE+   + +          L +V + K 
Sbjct: 557 NYCYTEDERIKSIEELGPN----PEITRFKGLGEISPDEFRHFIG--KDMRLEQVSLRK- 609

Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
                  ++ +   MG    ER  FI       +D+ +
Sbjct: 610 ---TDLVKELLEFYMGKNTMERQNFIINNLVIEEDLAS 644


>gi|302673662|ref|XP_003026517.1| hypothetical protein SCHCODRAFT_17796 [Schizophyllum commune H4-8]
 gi|300100200|gb|EFI91614.1| hypothetical protein SCHCODRAFT_17796 [Schizophyllum commune H4-8]
          Length = 1494

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 162/719 (22%), Positives = 289/719 (40%), Gaps = 69/719 (9%)

Query: 3   DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRP 62
           DD+ +  S +        E     G  P + +  N+SAS+ Y     + L  LE +  RP
Sbjct: 51  DDNAEDESDIDVVMADPDEVNDADGVDP-TSSKKNKSASETY-----QKLTQLEHILKRP 104

Query: 63  GMYIGGTDE-----------------------KALHHLFSEVIDNAMDEVIAGY-ANLIE 98
             YIG  +                             +  E++ NA D  I     + I+
Sbjct: 105 DSYIGSVETIQQPMWTYDAEKKRMVHRTVKYVPGFFKIVDEILVNAADNKINDPSMDTIK 164

Query: 99  VSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           VS D +   ++V +NG+GIP+E H +       E+I   L +   +D+   +++GG +G 
Sbjct: 165 VSYDLDENTISVYNNGKGIPIEMHSR-EKMYIPELIFGHLLSSSNYDDDEKKLTGGRNGY 223

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG---TRITFRPDPK 214
           G  + N  S E  V  A +NT    K +    +S   K +   N +G   TR+TFRPD K
Sbjct: 224 GAKLANIYSHEFTVETADKNTKQKYKQTWTDNMSKCGKPKITSNGKGEEYTRVTFRPDLK 283

Query: 215 IFGDKA--GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            FG        A+ L +     A     VK   + ++    K    ++    +    +  
Sbjct: 284 RFGMDRIDEDTASLLQRRVYDLAGTVKDVKVFLNDERL---KIKNFKQYVEMYINSAQAE 340

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHES 332
                   +     I               E A    E   +  S+ N+I T +GGTH +
Sbjct: 341 ASEVSGGAAQTKPTIVH------EILGKRWEVAFTVSEGTFQQVSFANSIATIKGGTHVN 394

Query: 333 GLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
            +   + +     A + +  +A ++ +  +       ++  I  P F  QTK  L    +
Sbjct: 395 LIADQIAK--NLLASINKKNKAATVKAPQIKNHMWIFVNALIENPTFDSQTKETLTLPAS 452

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPG 451
           +   +  L + F   + ++P     L+E ++  ++ +  ++ ++   ++++ +  L    
Sbjct: 453 KFGTKPVLSEDFMKKVQKSP-----LVENILNWAKFKADQQIKKTDGSKRSRLTGLPKLS 507

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIR 508
              +     A    L + EGDSA   A        R N  V PLRGK+LNV  A  ++I 
Sbjct: 508 DANNAGTKYAKDCTLILTEGDSAKALAIAGLGVVGRDNYGVFPLRGKLLNVREARHDQIM 567

Query: 509 NNQQIMDLVQALGCRTRSQY-REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
            N++I ++ + LG +    Y     LRY K++IMTD D DG+HI  L+L F       L+
Sbjct: 568 KNEEIQNIKKILGLQHNKDYTDIASLRYGKLMIMTDQDHDGSHIKGLILNFLDHFYPSLL 627

Query: 568 EQK--HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           +     L     P+ R+T+G +          ++ LE        K     +KGLG    
Sbjct: 628 KLDPAFLLEFITPIVRVTKGNQRKDFFTLPEYERWLETTPDA--RKWSAKYYKGLGTSKD 685

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ--ERASFID 682
           S  ++      K  +   +  +     +    + +K    KAD+R ++++  +  +F++
Sbjct: 686 SDARDYFSHTEKHVIPFAQTQEG--DRELIDLAFSK---KKADDRKEWLRTCKPGTFLN 739


>gi|327275489|ref|XP_003222506.1| PREDICTED: DNA topoisomerase 2-alpha-like [Anolis carolinensis]
          Length = 1559

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 139/704 (19%), Positives = 264/704 (37%), Gaps = 71/704 (10%)

Query: 7   DLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYI 66
           DL  +  P      +   K  +I +  +    S    Y          LE + +RP  YI
Sbjct: 2   DLDESFSPLKT--VDVNPKVDKIKNEDSKKRLSVERIYQKK-----TQLEHILLRPDTYI 54

Query: 67  GGTD----------------------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD- 102
           G  +                         L+ +F E++ NA D        + I++++D 
Sbjct: 55  GSVEQVTQQMWVFDEEIGLNCRDVTFVPGLYKIFDEILVNAADNKQRDKKMSCIKITIDP 114

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            N  ++V +NG+GIPV  H K        +I   L     +D+   +++GG +G G  + 
Sbjct: 115 ENNTVSVWNNGKGIPVVEH-KVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLC 173

Query: 163 NALSDELHVT--VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGD 218
           N  S +  V          F Q +S  +  +   K +    +  T ITF+PD        
Sbjct: 174 NIFSTKFTVETACREYKKRFQQTWSNNMGKAGEMKLKYFDGEDFTCITFQPDLAKFKMTT 233

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
                 A + +     A  S  V    + +K                  G ++Y+   ++
Sbjct: 234 LDKDIVALMSRRAYDIAGASNGVTVFLNGNKLPV--------------RGFRSYVDLYIK 279

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
           ++   +  +     E+        E  +   E+  +  S+ N+I T +GG H   +   +
Sbjct: 280 DKVDETGNLLKIIHEE---VNSRWEVCLTMSEKGFQQVSFVNSIATTKGGRHVDYVADQI 336

Query: 339 TRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
              +    +    K  +++    +       ++  I  P F  QTK  +           
Sbjct: 337 VNKLIDVVKRRN-KGGVAVKPFQVKNHMWIFINCLIENPTFDSQTKENMTLQAKSFGSTC 395

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            L + F    V        +L WV  +++   +  K+    + T I+ +       D   
Sbjct: 396 KLSEKFIKGAVS-CGIVENILNWVKFKAQ--NQLNKKCSAVKHTRIKGIPKLDDANDAGS 452

Query: 459 NIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
             +    L + EGDSA   A        R    V PLRGK+LNV  A  ++I  N +I +
Sbjct: 453 KNSINCTLILTEGDSAKTLAVSGLGVVGRDRYGVFPLRGKMLNVREASHKQIMENAEINN 512

Query: 516 LVQALGCRTRSQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +++ +G + +  Y +E+    LRY K++IMTD D DG+HI  LL+ F +     L+  + 
Sbjct: 513 IIKIVGLQYKKTYDDEESLRTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRF 572

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           L     P+ ++++  + +  +     ++   +         +   +KGLG   + + KE 
Sbjct: 573 LEEFITPIVKVSKNKEEISFYSIPEFEEW--KSSNSNYRNWKTKYYKGLGTSTSKEAKEY 630

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675
             +  +   +  + +           + +K    K D+R +++ 
Sbjct: 631 FAEMTRHR-IPFKYS-GPEDDAAITLAFSK---KKIDDRKEWLT 669


>gi|242016991|ref|XP_002428978.1| DNA topoisomerase 2-beta, putative [Pediculus humanus corporis]
 gi|212513807|gb|EEB16240.1| DNA topoisomerase 2-beta, putative [Pediculus humanus corporis]
          Length = 1223

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 136/683 (19%), Positives = 256/683 (37%), Gaps = 70/683 (10%)

Query: 29  IPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE----------------- 71
            P     +  +  + Y   S      LE + +RP  YIG  +                  
Sbjct: 22  PPAKKIKSKTTVEEIYQKKS-----QLEHILLRPDTYIGSVEPVKENMWIYDNETEKMIQ 76

Query: 72  ------KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPK 123
                   L+ +F E++ NA D        + I++ +D  N  ++V +NG+GIPV  H K
Sbjct: 77  KDITYVPGLYKIFDEILVNAADNKQRDKKMDCIKIDIDAENNTVSVWNNGQGIPVVEH-K 135

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA--RQNTIFS 181
                   +I   L     +++   +++GG +G G  + N  S +  +  A       F 
Sbjct: 136 EEKMFVPTMIFGYLLTSSNYNDEEEKVTGGRNGYGAKLCNIFSTKFTLETASIEYKRKFK 195

Query: 182 QKFSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSG 239
           Q ++  +  +   K      +  T++TF PD                + +     A  + 
Sbjct: 196 QTWANNMTKTTDPKISDFFGEDFTKVTFSPDLAKFKMTHLDKDIVDLMSRRAYDVAASTR 255

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            VK   +  +   + +              K Y++   + +   +        E      
Sbjct: 256 GVKVILNGKRLPIKSF--------------KDYVELYTKGKEDDAGNPVKIIYE---NVN 298

Query: 300 GTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359
              E A+   + + +  S+ N+I T +GG H   +   L + + +     +NK  + + +
Sbjct: 299 ERWEVAVTMSDNDFQQVSFVNSIATTKGGRHVDHVTDILVKKLLEVCN-KKNKAGMQLKA 357

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
             +       ++  I  P F  QTKT +         +  L D F   + +       +L
Sbjct: 358 HQIKNHLWIFINCLIVNPTFDSQTKTHMTLQMKNFGSKCTLSDKFITNVTK-CGVIEAVL 416

Query: 420 EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
            W   ++E   +  ++    + T ++ +       D     +    L + EGDSA   A 
Sbjct: 417 SWAKFKAEA--QMDRKCSGKKMTKLKGIAKLEDANDAGTKNSVNCTLILTEGDSAKSLAV 474

Query: 480 QA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED---- 532
                  R    V PLRGK+LNV  A  ++I  N +I +L++ LG + + +Y   D    
Sbjct: 475 SGLGVVGRDKYGVFPLRGKLLNVREATHKQILENAEINNLIKILGLQYKKKYESSDDLKT 534

Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAH 592
           LRY K++IMTD D DG+HI  L++ F +     L+    L     P+ + T+G + +  +
Sbjct: 535 LRYGKLMIMTDQDQDGSHIKGLIINFIHHNWPSLLRLPFLEEFITPIVKATKGKEELSFY 594

Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652
                +   +  +           +KGLG   + + KE   D  +  +L        +  
Sbjct: 595 SLPEFEDWKKATENA--HLYRTKYYKGLGTSTSKEAKEYFQDMKRHRILF--NYDGPSDD 650

Query: 653 KDTQDSINKLMGTKADERFKFIQ 675
                + +K     AD+R +++ 
Sbjct: 651 YCINMAFSK---KCADQRKEWLT 670


>gi|321457974|gb|EFX69050.1| hypothetical protein DAPPUDRAFT_329527 [Daphnia pulex]
          Length = 1572

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 142/718 (19%), Positives = 268/718 (37%), Gaps = 80/718 (11%)

Query: 1   MTDDS--IDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPV 58
           M  D     LF+ +  +   +SE          + A    S    Y   S      LE +
Sbjct: 1   MASDGPLKSLFAKM-NKGTVASEAATNGDAGKKNGANKRLSVERIYQKKS-----QLEHI 54

Query: 59  RMRPGMYIGGTDE----------------------KALHHLFSEVIDNAMDEVIAGY-AN 95
            +RP  YIG  +                         L+ +F E++ NA D  +     +
Sbjct: 55  LLRPDTYIGSVEPVKDVMWVYEEDAGMIQREITYVPGLYKIFDEILVNAADNKVRDPKMD 114

Query: 96  LIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
            I+V +D     +T+ +NG+GIPV  H K        +I   L     +++   +++GG 
Sbjct: 115 TIKVDIDPKENVITIYNNGKGIPVVEH-KEEKMYVPSLIFGHLLTSSNYNDEEEKVTGGR 173

Query: 155 HGVGISVVNALSDELHVTV--ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           +G G  + N  S    +      +   F Q ++  +  +   K         T+ITF PD
Sbjct: 174 NGYGAKLCNIFSTSFELETASKDERKKFKQTWTDNMTKAGTPKIVNYNEADFTQITFSPD 233

Query: 213 --PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
                         A L +     A  +  VK   +  +   + +              K
Sbjct: 234 LAKFKMDSLDKDTVALLSRRAFDVAASTRGVKVFLNGKRLPIKNF--------------K 279

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330
            Y+   L+ +            E         E A+A  ++  +  S+ N+I T +GG H
Sbjct: 280 DYVDLCLKGKEDDDGAQLKCVYEA---VSERWEIAVAPSDKGFQQVSFANSIATTKGGRH 336

Query: 331 ESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
              +   +++ ++++ +  +NK  I++    +       ++  I  P F  QTK  +   
Sbjct: 337 VDYVTEIVSKYLQEFLK-KKNKSGINVKPHQIKNHLWIFVNCLIVNPTFDSQTKENMTLQ 395

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV--NRKTAIRKLR 448
                      + F      N +  + ++E V+  ++ + +    +     ++T ++ + 
Sbjct: 396 AKSFGSTCKPSEKFF-----NALNKSGVIEGVMTWAKFKAQTELNKACSGKKQTKLKGVP 450

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSE 505
                 +     +    L + EGDSA   A        R    V PL+GK+LNV  A  +
Sbjct: 451 KLEDANNAGTKHSIDCTLILTEGDSAKSLAVSGLGVVGRDKYGVFPLKGKVLNVREATHK 510

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
           +I  N +I +L++ LG + + +Y   +    LRY +++IMTD D DG+HI  LL+ F + 
Sbjct: 511 QILENAEINNLIKILGLQYKKKYESVEDLKSLRYGRLMIMTDQDQDGSHIKGLLINFLHH 570

Query: 562 EMYDLIEQKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
               L+    L     P+ + T+GT    KS+  +     ++   +          I  +
Sbjct: 571 NWPSLLRLPFLEEFITPIVKATKGTGASAKSLSFYSLPEFEEW--KTNTENWPTYRIKYY 628

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675
           KGLG   + + K    D  +  +L                + +K      ++R +++ 
Sbjct: 629 KGLGTSTSQEAKGYFSDMQRHRILFHH--DGDQDDYAILMAFSK---KHVEQRKEWLT 681


>gi|18369820|dbj|BAB84105.1| DNA topoisomerase II [Penicillium marneffei]
          Length = 1162

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 148/692 (21%), Positives = 277/692 (40%), Gaps = 71/692 (10%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-------------------- 70
            S A     A D Y     + L   E +  RP  YIG  +                    
Sbjct: 9   ASEAPTQTGAGDKY-----QKLTQYEHIIKRPDTYIGSIEKTTQQMWVYDSATESMAFRE 63

Query: 71  ---EKALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFP 125
                 L+ +F E++ NA D        + I +++D   G ++V +NGRGIP+E H K  
Sbjct: 64  VTFVPGLYKIFDEIVVNAADNKQNDEKMDEIRITIDRESGVISVWNNGRGIPIEIHSK-E 122

Query: 126 NKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDEL--HVTVARQNTIFSQK 183
                E+I   L     +D+   +++GG +G G  + N  S E       +RQ   + Q 
Sbjct: 123 KIYVPELIFGHLLTSSNYDDGQMKVTGGRNGFGAKLCNVFSTEFSIETCDSRQGKKYHQT 182

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK-AGFDAARLLKMTQSKAYLSGRVK 242
           ++  +      K    ++   T++TF+PD + FG      D   L+K        + +V 
Sbjct: 183 WTDNMSKVGKAKITSSKSDDYTKVTFKPDYQKFGMDGMDDDFEALVKRRVYDLAGTAKVA 242

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
              +  +               F   ++ Y +   + R   +    +         R  V
Sbjct: 243 VKLNGSRIPVRN----------FKKYMEMYTKAIKKERGEEAVNDKSEIVTASPDPRWEV 292

Query: 303 EWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDL 362
            +A++  + + +  S+ N+I T  GG+H + +   +   + + A   +NK+  ++ +  +
Sbjct: 293 GFAVS--DGSFQQVSFVNSIATTSGGSHVNYIADQICNRLAE-AVKKKNKQGATLKASQI 349

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
                  ++  I  P F  QTK +L +  +Q   +  L D F   +++     T+++  +
Sbjct: 350 RNHIFIFVNALIVNPAFTSQTKEQLTTKPSQFGSKCILDDDFYKKVLK-----TEVMTNI 404

Query: 423 IERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           +  +E++  +  ++    + +                  H   L + EGDSA G A   R
Sbjct: 405 LHFAEKKADQLLKKTDGGRRSRMNNPKLTDANKAGTKDGHHCTLILTEGDSAKGLAMAGR 464

Query: 483 N---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKV 538
                    V PLRGK+LNV  A  ++I  N +I ++   +G + + +Y +   LRY  +
Sbjct: 465 AVVGPDLFGVFPLRGKLLNVRDASVDQISKNAEIQNIKSFIGLQHKKEYTDTRGLRYGHL 524

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQK-HLFLISPPLFRITQG-----TKSVYAH 592
           +IMTD D DG+HI  LL+ F   +   L++    L     P+ ++ +G     TKS    
Sbjct: 525 MIMTDQDHDGSHIKGLLINFLQVQFPSLLKIPEFLIEFITPIIKVWKGDPKNPTKSKSFF 584

Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652
                ++  EE         +   +KGLG       +    D ++       +    +  
Sbjct: 585 TMPEYEQWKEE--NKNDLSWQHKYYKGLGTSTTEDAQIYFRDLDRHLKEFHTMQD--HEA 640

Query: 653 KDTQDSINKLMGTKADERFKFIQER--ASFID 682
           +    + +K    KADER +++++    +F+D
Sbjct: 641 QLIDLAFSK---KKADERKEWLRQYKPGTFLD 669


>gi|324500558|gb|ADY40259.1| DNA topoisomerase 2 [Ascaris suum]
          Length = 1586

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 148/675 (21%), Positives = 250/675 (37%), Gaps = 70/675 (10%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTD------------------------EKAL 74
           S    Y   S      LE + +RP  YIG  +                           L
Sbjct: 80  SIEKIYQKKS-----QLEHILLRPDTYIGSVEHTDRAPMWVYDAEAERIVQRDISYVPGL 134

Query: 75  HHLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEI 132
           + +F EV+ NA D        + I+V+++     + V +NG+GIPV  H K  N    E+
Sbjct: 135 YKIFDEVLVNAADNKQRDPKMSTIKVTINKEKNEIAVFNNGKGIPVVRH-KVENVYVPEL 193

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTV--ARQNTIFSQKFSRGIPL 190
           I  TL     +D+S  +++GG +G G  + N  S E  V         +F Q +   +  
Sbjct: 194 IFGTLLTSSNYDDSERKVTGGRNGYGAKLCNIFSKEFTVETSSKEYGKVFKQTWINNMTK 253

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
                  K   +  TR+TF+PD   F          A + +     A  +  VK   +  
Sbjct: 254 DKEPFIGKSSGEDFTRVTFKPDLSKFKMTELDDDIVALMSRRAYDVAGSTKGVKVYLNNK 313

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
                              G K Y+    ++      E +    E   T     + AI  
Sbjct: 314 --------------LLPVQGFKQYVDQYAKHNLDSQGEPYKVIYE---TANERWDVAITV 356

Query: 309 CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVG 368
            E+  +  S+ N+I T +GG H   +   +T  +    +    K  IS+    +      
Sbjct: 357 SEKGFQQVSFVNSIATTKGGRHVDYVADQITSKLIDTIKKKIGKSGISVKPFQIKNHMWV 416

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
            ++  I  P F  QTK  L         +  L + F + +++  I    +      R ++
Sbjct: 417 FVNCLIENPTFDSQTKEALTLQSKSFGSKCELSERFVNSVMKCGIVEAVMAW---VRFKQ 473

Query: 429 RLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRS 485
           +    K+    R + ++ +       D     +    L + EGDSA   A        R 
Sbjct: 474 QETLDKKCSSKRTSKLKGVPKLEDANDAGTKNSSLCTLILTEGDSAKSLAVSGLGVVGRD 533

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED----LRYEKVIIM 541
              V PLRGK+LNV     ++I  N +I  L++ +G + R +Y ++D    LRY KV++M
Sbjct: 534 RYGVFPLRGKMLNVREGNHKQIMENAEINALIKIIGLQYRLKYDKDDDMKTLRYGKVMVM 593

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
            D D DG+HI  L++ F +     LI +  +     P+ + T+G +           +  
Sbjct: 594 ADQDQDGSHIKGLVINFIHYNWPALIRRNFVEEFITPIVKATKGKEEYSFFSLPEYNEWR 653

Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
                       I  +KGLG   + + KE   D  +   +R     D         + +K
Sbjct: 654 N--NTENWKSYRIKYYKGLGTSTSKEAKEYFTDMARHR-IRFRYAGD-EDDSSIDMAFSK 709

Query: 662 LMGTKADERFKFIQE 676
               K ++R  ++  
Sbjct: 710 ---RKIEDRKVWLTN 721


>gi|198274083|ref|ZP_03206615.1| hypothetical protein BACPLE_00220 [Bacteroides plebeius DSM 17135]
 gi|198273161|gb|EDY97430.1| hypothetical protein BACPLE_00220 [Bacteroides plebeius DSM 17135]
          Length = 645

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 190/686 (27%), Positives = 301/686 (43%), Gaps = 96/686 (13%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYA 94
           +S  Y   +IR L  +E VR RPGMYIG        E  ++ L  EV+DN++DE   G  
Sbjct: 10  SSAAYTEENIRHLSDMEHVRTRPGMYIGRLGDGSQVEDGIYVLLKEVVDNSIDEFKMGAG 69

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             I++ ++ N  ++V D GRGIP+          +L   ++ L+ GGK+D   ++ S GL
Sbjct: 70  KRIDIQMEDNLRVSVRDYGRGIPLG---------SLVDAVSMLNTGGKYDTKAFKKSVGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           +GVG   VNALS       AR   +    F RG  +S          + GT I F PD  
Sbjct: 121 NGVGAKAVNALSRRFIAWSARDGQMRKAVFERGELVSDETC--ATDEENGTYIFFEPDDT 178

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           +F +   F    +  M ++  YL+  +   ++  +                  GL+  L 
Sbjct: 179 LFLNYH-FRPEFIETMLRNYTYLNTGLSIYYNGHRI-------------VSRNGLEDLLN 224

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
             +    L      TG+          +E A     +   E  S+ N   T +GGTH+S 
Sbjct: 225 DNMTAPGLYPIVHLTGE---------DIEIAFTHSAQYGEEYYSFVNGQHTTQGGTHQSA 275

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            +  + R IK++          ++   D+    V  +++ + EP F  QTK KL SL   
Sbjct: 276 FKEHIARAIKEFYG-------KNLEFQDIRNGLVAAIAINVIEPTFESQTKIKLGSLTMA 328

Query: 394 R------------------TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
                               V + +++  D+YL ++P  A  LL+ + E  +ER      
Sbjct: 329 PEKDSEGNPYPFSGISVNKFVGDFVKEQVDNYLHKHPDVAEVLLQKIQESEKERKAIAGV 388

Query: 436 REVNRKTAIRKLRLPGKLADCSQNIAHGT-------------ELFIVEGDSAGGSAKQAR 482
            ++ R+ A +      KL DC  ++                  +FI EGDSA GS  ++R
Sbjct: 389 TKIARERAKKANLHNRKLRDCRIHLNDQKGGKKEEDDPRLESSIFITEGDSASGSITKSR 448

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           + + QAV  LRGK LN      + +  N++   L  AL          + LRY KVI+ T
Sbjct: 449 DVNTQAVFSLRGKPLNSFGLTKKVVYENEEFNLLQAALNIEEGL----DGLRYNKVIVAT 504

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTK----SVYAHDEEHKQ 598
           DADVDG HI  L++TFF Q   DLI++ H++++  PLFR+    K    ++Y + +E + 
Sbjct: 505 DADVDGMHIRLLMITFFLQFFPDLIKKGHVYILQTPLFRVRNRKKGVYETIYCYSDEERV 564

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
             +E+   +     EI+RFKGLGE+   + +          L +V + K        ++ 
Sbjct: 565 AAIEKLSPN----PEITRFKGLGEISPDEFRHFIG--KDMRLEQVTLRK----TDAVKEL 614

Query: 659 INKLMGTKADERFKFIQERASFIDDV 684
           +   MG    ER  FI +     +D+
Sbjct: 615 LEFYMGKNTMERQNFIIDNLVVEEDL 640


>gi|213407866|ref|XP_002174704.1| DNA topoisomerase [Schizosaccharomyces japonicus yFS275]
 gi|212002751|gb|EEB08411.1| DNA topoisomerase [Schizosaccharomyces japonicus yFS275]
          Length = 1499

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 149/740 (20%), Positives = 268/740 (36%), Gaps = 95/740 (12%)

Query: 3   DDSIDLFSTLPPQSQGSSEKLKKSG-------------------EIPDSPAFANQS---A 40
           D   D F    P+   S  +                          P+  A  N++   A
Sbjct: 11  DSGDDSFVAPAPKRPASRGRKAAGTGSRSTSRSVSRSGSGSSHEPTPEPLAEVNKNVPSA 70

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTD-----------------------EKALHHL 77
           S  Y     + +   E V  RP  YIG  +                          L+ +
Sbjct: 71  SQQY-----QRISPREHVLRRPDTYIGSVEKTEMPMWVYDSEQNKMVYKEVNIVPGLYKI 125

Query: 78  FSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILT 135
           F E+I NA D  +     N ++V +D     ++V +NG+GIPVE H K       E+I  
Sbjct: 126 FDEIIVNAADNKVRDPTMNTLKVEIDPEANVISVYNNGKGIPVEIHEK-EGIYIPELIFG 184

Query: 136 TLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQ--NTIFSQKFSRGIPLSPL 193
            L     +D++  +++GG +G G  + N  S E  V  A +     + Q ++  +     
Sbjct: 185 HLLTSSNYDDNQKKVTGGRNGYGAKLCNIFSHEFTVETADKLRMKKYKQTWTENMSKKSE 244

Query: 194 EKKEKVRNKR-GTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            K   ++     T+ITF+PD              + + +     A     +K   + ++ 
Sbjct: 245 PKVVDMKRADEYTKITFKPDLAKFGMTKLDDDLVSVVKRRVYDMAGTIPDIKVFLNNERI 304

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             +           F   ++ ++ +                           E A    +
Sbjct: 305 NIKN----------FRKYVELFVSSLRNRTDSTKPPTILY-----DRPNERWEVAYTLSD 349

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
              +  S+ N+I T  GGTH + +   + + ++   E ++  +  ++    +  +    +
Sbjct: 350 GQFKNISFVNSIATTRGGTHVNYVADEIVKRVQA--EFSKKNKHAALKPFQIKNNLWLFI 407

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           +  I  P F  QTK  L +  +    +  L D F   L++     ++++    E ++ + 
Sbjct: 408 NCQIVNPSFDSQTKETLTTKPSAFGSKCDLSDTFFKQLIK-----SEIIAVCSELAKAKA 462

Query: 431 RRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSN 486
            ++  +     ++ I  L             +    L + EGDSA            R  
Sbjct: 463 DQQMSKTDGKSRSRITGLPKLSDANKAGTRESKKCTLILTEGDSAKTLVVSGLGVVGRDY 522

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDAD 545
             V PLRGK+LNV  A   +I NN++I  + + LG     +Y   D LRY  ++IMTD D
Sbjct: 523 YGVYPLRGKLLNVREASYNQIINNKEIQAIKKILGLAHNKKYTSTDGLRYGHLMIMTDQD 582

Query: 546 VDGAHIASLLLTFFYQEMYDLIE-QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
            DG+HI  L++ +       L+  +  L     P+ R  +G + +            E  
Sbjct: 583 HDGSHIKGLIINYLESTYPSLLHLEGFLIEFITPIVRCRKGREIISFFTLPEFDYWKE-- 640

Query: 605 KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMG 664
             +      I  +KGLG   A  +KE     ++       I    N L     + +K   
Sbjct: 641 NNNNGRGWSIKYYKGLGTSDAKDMKEYFSALDRHIKQFHTIQDGENDL--IDMAFSK--- 695

Query: 665 TKADERFKFIQER--ASFID 682
            KAD R ++++      +ID
Sbjct: 696 KKADVRKEWLRTYHPGLYID 715


>gi|158299572|ref|XP_319665.4| AGAP008917-PA [Anopheles gambiae str. PEST]
 gi|157013582|gb|EAA14841.5| AGAP008917-PA [Anopheles gambiae str. PEST]
          Length = 1427

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 140/679 (20%), Positives = 252/679 (37%), Gaps = 75/679 (11%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----------------------EKAL 74
           +S    Y   S      LE + +RP  YIG  +                          L
Sbjct: 5   KSIEKIYQKKS-----QLEHILLRPDTYIGSVEMVKEPMWIFDKEANKMVQRDITYVPGL 59

Query: 75  HHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
           + +F E++ NA D        + I+V ++     ++V ++G GIPV  H K        +
Sbjct: 60  YKIFDEILVNAADNKQRDPKMSTIKVEINQETNTISVWNDGHGIPVVMH-KEEKMYVPTM 118

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI---P 189
           I   L     +++   +++GG +G G  + N  S +  V  A +      K + G     
Sbjct: 119 IFGHLLTSSNYNDEEEKVTGGRNGYGAKLCNIFSTKFTVETASKQYKKCFKQTWGDNMSK 178

Query: 190 LSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247
            +  + KE       T+ITF PD                L +     A  +  V    + 
Sbjct: 179 TTEPKIKEDFFGNDYTKITFSPDLSKFKMEKLDDDIVGLLSRRAYDVAASTRGVSVYLNG 238

Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307
            +   + +              K Y+   L + +           E   +     E A+A
Sbjct: 239 TRVPVKNF--------------KDYIDLFLRDTTDDVGAPVKMCYE---SVNERWEVAVA 281

Query: 308 WCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAV 367
             E   +  S+ N+I T +GG H   +   + + + +     +NK  ++I    +     
Sbjct: 282 ISERGFQQVSFVNSIATTKGGRHVDYVSDMIVKQLIE-VLKKKNKGGVTIKPFQVKNHMW 340

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
             ++  I  P F  QTK  +         + AL + F   + +     + ++E V++ ++
Sbjct: 341 VFINCLIVNPTFDSQTKENMTLQSKSFGSKCALSEKFITAVSK-----SGIVESVLQWAK 395

Query: 428 ERLRRRKQREVNRKTAIRKLRLPGKLA-DCSQNIAHGTELFIVEGDSAGGSAKQA---RN 483
            + +    +    K +  K     + A D     +    L + EGDSA   A        
Sbjct: 396 FKAQTDLAKTSGSKKSKIKGIPKLEDANDAGSRNSLNCTLILTEGDSAKTLAVSGLGVVG 455

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED----LRYEKVI 539
           R    V PLRGK+LNV  A  ++I  N +I +L++ LG + + +Y   D    LRY KV+
Sbjct: 456 RDTYGVFPLRGKLLNVREATHKQILENAEINNLIKILGLQYKKKYLTMDDLKTLRYGKVM 515

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQ 598
           IMTD D DG+HI  LL+ F +    +L+    L     P+ + T+   + +        +
Sbjct: 516 IMTDQDQDGSHIKGLLINFIHTNWPELLRLPFLEEFITPIVKATKKNGEELSFFSLPEFE 575

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           +   E          I  +KGLG   + + KE   +  +  +L        +       +
Sbjct: 576 EWKAETANSHT--YNIKYYKGLGTSTSKEAKEYFQNMERHRIL-FRYEDTGDDDA-IMLA 631

Query: 659 INKLMGTKADERFKFIQER 677
            +K      ++R  ++   
Sbjct: 632 FSK---KAIEQRKDWLTAH 647


>gi|203283965|ref|YP_002221705.1| DNA topoisomerase IV, B subunit [Borrelia duttonii Ly]
 gi|201083408|gb|ACH92999.1| DNA topoisomerase IV, B subunit [Borrelia duttonii Ly]
          Length = 598

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 188/650 (28%), Positives = 305/650 (46%), Gaps = 67/650 (10%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYA 94
             + YD S I  L  LE +R+R GMYIG        +  ++ L  E++DN++DE I GY 
Sbjct: 2   KKNFYDESKIVTLSSLEHIRLRSGMYIGRLGDGSNIDDGIYILIKEIVDNSIDEFIMGYG 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             I V    +  +TV D GRGIP+           +E + + ++ G K+++  ++ S GL
Sbjct: 62  KEI-VIKREDNVITVRDYGRGIPLGK--------VVESV-SVINTGAKYNDDVFQFSVGL 111

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           +GVG   VNALS +  +   R+   F   FS+G  ++  E   K   + GT I F  D +
Sbjct: 112 NGVGTKAVNALSSKFLIRSIREGNFFEAVFSKGNLINTTE--GKSDEQNGTYIEFLADTE 169

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IFG    +    L +     A L+  ++  ++              + F    GL  +++
Sbjct: 170 IFGKY-KYSEDFLQRRFFHYACLNKGLEINYND-------------QIFRSDNGLLDFIR 215

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
            +++   L+   ++            T+E+A +          S+ N   T +GGTH++G
Sbjct: 216 AEIKYEDLLYDFVYYSS--------KTLEFAFSHTNNYGETYFSFVNGQYTSDGGTHQTG 267

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            R    R I  +      K+  S    D+    V  LS+ I++P F  QTK KL +++ +
Sbjct: 268 FREGFARAINDF-----LKKTYSST--DIREGLVATLSIKIKDPIFESQTKNKLGNVETR 320

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
             +   ++      L ++   A  +   VI+    R      R+  ++ A +      KL
Sbjct: 321 GNIAKEVQRLILEILYKDKTLAKTIESKVIDNERLRKELSSVRKEAKERAKKISFKIPKL 380

Query: 454 ADCSQN------IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            DC  +       +  T +F+ EGDSA GS    R+   QA+  LRGK  N+      +I
Sbjct: 381 KDCKFHFNEKSVHSDATMIFLTEGDSATGSMVSCRDVYTQAIFSLRGKPQNMFEKNRSEI 440

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N+++ +++ ALG         E+LRY KV+I TDAD DG HI +LLLTFF     DL+
Sbjct: 441 YKNEELYNMMVALGIE----ESIENLRYNKVVIATDADFDGFHIRNLLLTFFLTYFEDLV 496

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
              H+ ++  PLFR+   + ++Y + EE KQK L + K       E++RFKGLGE+  ++
Sbjct: 497 LNGHMHILETPLFRVRNKSATIYCYSEEDKQKALLKLKN-----PEVTRFKGLGEISPNE 551

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
            K   +D     L +V    DL ++K+ ++ +   MG    ER  FI E 
Sbjct: 552 FKG-FIDVANIKLTKV----DLVNIKEIKEQLGFYMGPNTPERRNFIMEN 596


>gi|294657090|ref|XP_459406.2| DEHA2E01738p [Debaryomyces hansenii CBS767]
 gi|199432439|emb|CAG87617.2| DEHA2E01738p [Debaryomyces hansenii]
          Length = 1411

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 154/729 (21%), Positives = 283/729 (38%), Gaps = 68/729 (9%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLK--KSGEIPDSPAFANQSASDNYDASSIRILEGLEPV 58
           M+D S++ F+      + SS K     S   P      + +ASD Y     + L  LE +
Sbjct: 1   MSDGSVE-FAPTAATKKKSSSKTPLSDSTNTPKVSNGKSSNASDQY-----QKLSQLEHI 54

Query: 59  RMRPGMYIGGTD-----------------------EKALHHLFSEVIDNAMDEVIAGY-A 94
             RP  YIG  +                          L+ +F E++ NA D  I     
Sbjct: 55  LKRPDTYIGSVERSPIEMWCFDPIAESMVYKEVNIVPGLYKIFDEILVNAADNKIKDPSM 114

Query: 95  NLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
             I+V +D  N  + V+++G+GIPVE H K       E+I   L     +D+   +++GG
Sbjct: 115 KNIKVKIDPENNLIEVMNDGKGIPVEIHDK-EKIYIPELIFGNLLTSSNYDDDEKKVTGG 173

Query: 154 LHGVGISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEK-VRNKRGTRITFR 210
            +G G  + N  S E  +  A      ++ Q ++  +      K  K    +  T++TF+
Sbjct: 174 RNGFGAKLCNIFSTEFILETADLNTGFLYKQTWTNNMSNISKPKITKLKSKREYTKVTFK 233

Query: 211 PDPKIFGDK--AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           PD   FG         + L +                +  K     +        Y    
Sbjct: 234 PDLSKFGMTSLDEETLSVLTRRVYDLCGTVNNCNIYLNDKKLNIRNFKA------YVEMY 287

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGG 328
           +K   +   +   +  +         +       E A A  + +    S+ N+I T  GG
Sbjct: 288 VKAIKERNPDPEPMDGTIQNYTTIVHE-VFNDRWEVAFAVSDGSFNQVSFVNSIATTAGG 346

Query: 329 THESGLRVA-LTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           TH   +    +T+ I   A+  + K+ + I + ++  +    ++  I  P F  QTK +L
Sbjct: 347 THVKHVSDQIITKLIATLAKKEKGKKKLMIKTQEVKNNMFLFVNCLIENPAFTSQTKEQL 406

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL 447
            +  +Q   + + +       +   ++ + + +     +    +  ++ + +RK+ I+  
Sbjct: 407 TTKVSQFGGKPSEKIAISEQFINKILKTSIVDKIRSIANANEDKALQKVDGSRKSRIKGQ 466

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGS 504
                         H   L + EGDSA   A        R+     PLRGK+LNV  A +
Sbjct: 467 VKLVDANRAGTKEGHKCTLILTEGDSALSLAVAGLAVVGRNYYGCFPLRGKLLNVREAST 526

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
           +++  N +I  L Q +G + +  Y  E+   LRY  ++IMTD D DG+HI  L++ F   
Sbjct: 527 DQVSKNVEINALKQIIGLQHKKHYSLENINTLRYGHIMIMTDQDQDGSHIKGLIINFLET 586

Query: 562 EMYDLIEQ-KHLFLISPPLFRITQ-----GTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615
               L++    L     P+ ++T      G + +  +     +K  +      +      
Sbjct: 587 SFPGLLQVPGFLLEFITPIVKVTVNRRGSGKQVIPFYTMPEFEKWRDTEGLTCR--WTQK 644

Query: 616 RFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675
            +KGLG    ++ +E     +K       +  D    +    + +K    KAD+R +++Q
Sbjct: 645 YYKGLGTSTDAEGREYFSALDKHLKTFHALQGD--DQQLIDLAFSK---KKADDRKEWLQ 699

Query: 676 --ERASFID 682
             E  + +D
Sbjct: 700 GFEPGTHLD 708


>gi|83775666|dbj|BAE65786.1| unnamed protein product [Aspergillus oryzae]
          Length = 1437

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 148/671 (22%), Positives = 262/671 (39%), Gaps = 66/671 (9%)

Query: 52  LEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDNAMDE 88
           L  LE +  RP  YIG  +                          L+ +F E++ NA D 
Sbjct: 23  LTQLEHIIKRPDTYIGSIERTSQQMWVYSTESDGMEFREVSYVPGLYKIFDEIVVNAADN 82

Query: 89  VIAG-YANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146
                  + I V++    G ++V +NGRGIP+E H K       E+I   L     +D++
Sbjct: 83  KQNDANMDEIRVTISRETGEISVWNNGRGIPIEMHAK-EKIYVPELIFGHLLTSSNYDDT 141

Query: 147 TYEISGGLHGVGISVVNALSDEL--HVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
             +++GG +G G  + N  S E       +RQ   + Q ++  +      K    +    
Sbjct: 142 QQKVTGGRNGFGAKLCNVFSTEFSIETQDSRQKKKYKQTWTSNMTKMGKAKITDAKGDDY 201

Query: 205 TRITFRPDP-KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           T++TF+PD  K   D    D   L+K        + +V    +  +     +        
Sbjct: 202 TKVTFKPDYAKFGMDGMDNDFEALVKRRVYDLAGTAKVAVKLNGSRVPVRNFKK------ 255

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTIL 323
           Y     K   + + ++      EI T             E   A  + + +  S+ N+I 
Sbjct: 256 YMEMYTKAIRRERGDDGPAAKDEIITCS------PDPRWEVGFAVSDGSFQQVSFVNSIA 309

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           T  GGTH + +   +   +       +NK   ++    +       ++  I  P F  QT
Sbjct: 310 TTSGGTHVNYIADQICSKLAD-QVKKKNKNGATLKPAQIRNHIFIFVNAQIVNPAFTSQT 368

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443
           K +L +  +Q   +  L + F   +++     T ++  ++  ++++  +  ++    + A
Sbjct: 369 KEQLTTKSSQFGSKCVLEEDFYKKILK-----TDVMSNILHFAQQKADQMLKKTDGGRRA 423

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVA 500
                             H   L + EGDSA G A   R         V PLRGK+LNV 
Sbjct: 424 RMNNPKLTDANKAGTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVR 483

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFF 559
            A  E+I  N +I ++   LG + + +Y +   LRY  ++IMTD D DG+HI  LL+ F 
Sbjct: 484 DATFEQISKNAEIQNIKNFLGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINFL 543

Query: 560 YQEMYDLIEQK-HLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKGKIE 613
             +   L+     L     P+ ++ +G     TK          +   EE K   +   E
Sbjct: 544 QAQFPSLLRIPEFLIEFITPIIKVWKGDPKNPTKQRSFFTMPEYEAWKEEHK--HERGWE 601

Query: 614 ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKF 673
              +KGLG       +    D ++       +    N +   + + +K    KADER ++
Sbjct: 602 HKYYKGLGTSTTEDAQVYFRDLDRHLKEFHTMQD--NEVGLIELAFSK---KKADERKEW 656

Query: 674 IQE--RASFID 682
           +++    +F+D
Sbjct: 657 LRQFKPGTFLD 667


>gi|315286766|ref|ZP_07872180.1| DNA gyrase subunit B [Listeria ivanovii FSL F6-596]
 gi|313630895|gb|EFR98587.1| DNA gyrase subunit B [Listeria ivanovii FSL F6-596]
          Length = 481

 Score =  383 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 180/480 (37%), Positives = 280/480 (58%), Gaps = 14/480 (2%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
            ++ +Y+   I++LEGLE VR RPGMYIG T ++ LHHL  E++DNA+DE +AG+   IE
Sbjct: 11  ESASDYNEDQIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVWEIVDNAIDEALAGFCTEIE 70

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           ++++ +  +TV DNGRGIP   + K   + T+E+I T LHAGGKF    Y++SGGLHGVG
Sbjct: 71  ITIEADNSITVRDNGRGIPTGINEKI-GRPTVEVIFTVLHAGGKFGGGGYKVSGGLHGVG 129

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS  L V V R+   + Q+F RG  +  +E++ +  + RGT + F PDP+IF +
Sbjct: 130 ASVVNALSTSLEVYVHREGQKYYQRFERGDVVMDMEEQGET-DYRGTIVHFTPDPQIFTE 188

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              FD   L   T+  A+L+  +       +E  +      +++F++ GG+++Y++   +
Sbjct: 189 TTEFDFDTLRTRTRELAFLNRGLTISIEDKREEHK-----VRKDFHYEGGIRSYVEHLNK 243

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVA 337
            + +I       + E+       VE ++ +          + N I T EGGTHESG + A
Sbjct: 244 AKDVIHEPPIYLEGERDDIM---VEISMQYNTGFSSNIISFANNIHTYEGGTHESGFKTA 300

Query: 338 LTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR I  YA   +  +    ++  +D+      I+S+   +P+F GQTKTKL + +A+  
Sbjct: 301 LTRVINDYARRNKLFKDSDDNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARSI 360

Query: 396 VENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454
            +    +  + ++++NP  A K++E  V+        +R +    + + +    LPGKLA
Sbjct: 361 TDKLFSEALNKFMMENPDVAKKIVEKGVVASRARLAAKRAREVARKSSGLEISSLPGKLA 420

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I  N++I 
Sbjct: 421 DCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEEIR 480


>gi|325969896|ref|YP_004246087.1| DNA topoisomerase type IIsubunit alpha B region 2 domain protein
           [Spirochaeta sp. Buddy]
 gi|324025134|gb|ADY11893.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Spirochaeta sp. Buddy]
          Length = 600

 Score =  383 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 186/652 (28%), Positives = 300/652 (46%), Gaps = 69/652 (10%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----EKALHHLFSEVIDNAMDEVIAGYA 94
           A   YD S I+ L  LE +R RPGMYIG        +  ++ L  EV+DN++DE I GY 
Sbjct: 2   AKTTYDESKIQTLSALEHIRKRPGMYIGRLGNGTHVDDGIYILLKEVVDNSVDEFIMGYG 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I +       + V D GRGIP+           +   ++ ++ G K+ +  ++ S GL
Sbjct: 62  SRILIR-RKECEVRVRDYGRGIPLGK---------VVDCVSIINTGAKYSDDVFQFSVGL 111

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           +GVG   VNALS    VT  R+    S  FS+GI L   E+  + +   GT + F PDP+
Sbjct: 112 NGVGTKAVNALSSHFMVTSFREGKYHSATFSQGILLK--EETGETKEADGTEVVFTPDPE 169

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           +FGD   ++   +     S AYL+  +   ++                +    GL   L 
Sbjct: 170 LFGDY-AYNEDFIFSRLWSYAYLNTGLCLDYNGK-------------VYKSAHGLLDLLD 215

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGL 334
            ++    L +   +  K       +                 SY N   T +GGTH+S  
Sbjct: 216 KEVGTEGLYTIIHYQAK-------QMEFALTHVAGSYGENYFSYVNGQHTTDGGTHQSAF 268

Query: 335 RVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           +  + +GI ++      K+       D+    VG ++V +++P F  QTK KL + + + 
Sbjct: 269 KEGILKGINEHF-----KKNW--APQDVREGVVGAIAVKVKDPVFESQTKNKLSNTEIRT 321

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454
            + N +RD    +L++N  EA KL + +I     R    + ++  R++A +      KL 
Sbjct: 322 WIVNEVRDAIVDFLLKNAEEAQKLYQKIINNEALRKELNEVKKGARESAKKVSLNIPKLK 381

Query: 455 DCSQNIAH---------GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
           DC  ++            + +F+ EGDSA G+  + R+   QAV  LRGKI+NV      
Sbjct: 382 DCKYHLGQSTTHPDECEHSMIFLTEGDSASGTITKTRDVMTQAVFSLRGKIVNVYGKKKT 441

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           +I  N ++ +++ ALG         E LRY KVII TDAD DG HI +LL+T+F     D
Sbjct: 442 EIYKNAELYNMMVALGIENGV----EGLRYGKVIIATDADTDGFHIRNLLMTYFLTYFED 497

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           L+    L+++  PLFR+    ++VY + E  +     + K       E++RFKGLGE+  
Sbjct: 498 LVFAGRLYILETPLFRVRNKNQTVYCYSEHQRDDATAQIKNS-----EVTRFKGLGEIDP 552

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
            +  +         L+ V I      + +   ++   MG+   +R +FI E 
Sbjct: 553 KEFGQFIG--EDMRLIPVSI----AGMNEMHKTMEFYMGSNTPDRREFIMEN 598


>gi|167752021|ref|ZP_02424148.1| hypothetical protein ALIPUT_00263 [Alistipes putredinis DSM 17216]
 gi|167660262|gb|EDS04392.1| hypothetical protein ALIPUT_00263 [Alistipes putredinis DSM 17216]
          Length = 624

 Score =  383 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 191/664 (28%), Positives = 308/664 (46%), Gaps = 73/664 (10%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGY 93
           + S++Y   +I  L   E +R+RPGMYIG        +  ++ L  EV+DN++DE I G 
Sbjct: 8   NTSNSYGDDAIVTLSPREHIRLRPGMYIGKLGDGSQADDGIYVLIKEVVDNSVDEFIMGA 67

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
              I+V++  +  +TV D GRGIP++         +L   ++ ++ GGK+  S ++ + G
Sbjct: 68  GKQIDVTV-EDDIVTVRDYGRGIPLK---------SLAAAVSEMNTGGKYGGSAFKKTVG 117

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           L+GVG+  VN LS E      R     +  F++G+  S    +  V+ K GT I+FR D 
Sbjct: 118 LNGVGVKAVNMLSSEFTARSVRDGEARTVTFAQGLEQSD-RWESGVQEKNGTFISFRVDR 176

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           ++FGD   ++   + +M ++  YL+  +   ++              + +    GL   L
Sbjct: 177 EVFGDY-SYNLEYVEQMIRNYTYLNLGLTFRFNG-------------QSYVSKNGLLDLL 222

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
              +    L +    +G+          +E AIA          S+ N   T +GGTH++
Sbjct: 223 GENMTEEPLYAPIHLSGE---------DIEVAIAHGTGYGESYYSFVNGQYTSQGGTHQA 273

Query: 333 GLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
             R A+ + IK++               D+  S +  +SV + +P F  QTK KL S + 
Sbjct: 274 AFREAIAKTIKEFYH-------KDYDPSDIRTSIIAAISVRVTDPVFESQTKIKLGSKEI 326

Query: 393 QRTVE------NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           +  V       + L    D YL ++   A  L + ++E  +ER      ++  R+TA + 
Sbjct: 327 EPGVPLRNFIVDFLAKHLDDYLHKHSETAQILQKKIVENEKERKAISGIQKKARETAKKV 386

Query: 447 LRLPGKLADCSQNIAHGTE------LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
                KL DC  ++    E      +FI EG+SA GS  ++R+   QAV  LRGK LN  
Sbjct: 387 SLNNKKLRDCKIHLTDKNELAEESMIFITEGNSASGSITKSRDVRTQAVFSLRGKPLNCF 446

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
               + +  N++   L  AL          ++LRY KV+I TDADVDG HI  LL+TFF 
Sbjct: 447 GLTKKVVYENEEFNLLQAALNIE----EDMDNLRYNKVVIATDADVDGMHIRLLLMTFFL 502

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           Q   D+I   HL+++  PLFR+    ++ Y + EE K + +     +     EI+RFKGL
Sbjct: 503 QFFPDVIRGGHLYVLQTPLFRVRNKKETHYCYSEEEKNRAVARCGANA----EITRFKGL 558

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           GE+   + +          L +V + KD        D +   MG    ER  FI      
Sbjct: 559 GEISPDEFRGFIG--QDIRLDKVRLTKD----DPIHDMLEFYMGKNTYERQGFIIGNLRI 612

Query: 681 IDDV 684
            +D+
Sbjct: 613 EEDI 616


>gi|186510360|ref|NP_001118686.1| TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA
           topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/
           DNA-dependent ATPase [Arabidopsis thaliana]
          Length = 1438

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 147/699 (21%), Positives = 275/699 (39%), Gaps = 70/699 (10%)

Query: 14  PQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGG----- 68
           P    ++  + K+     + A   ++  + Y   S      LE + +RP  YIG      
Sbjct: 6   PLQNSNAANVAKAPAKSRAAAGG-KTIEEMYQKKS-----QLEHILLRPDTYIGSIEKHT 59

Query: 69  ----------------TDEKALHHLFSEVIDNAMDEVIAG-YANLIEVSLD-GNGFLTVV 110
                           T    L+ +F E++ NA D        + ++V +D     ++V 
Sbjct: 60  QTLWVYEKDEMVQRPVTYVPGLYKIFDEILVNAADNKQRDAKMDSVQVVIDVEQNLISVC 119

Query: 111 DNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELH 170
           ++G G+PVE H +       E+I   L     +D++  + +GG +G G  + N  S E  
Sbjct: 120 NSGAGVPVEIHQE-EGIYVPEMIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFI 178

Query: 171 VTVARQNTIFSQK--FSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK--AGFDAA 225
           +  A    +   K  F   +         K  +++  T++TF+PD K F          A
Sbjct: 179 IETADGKRLKKYKQVFENNMGKKSEPVITKCNKSENWTKVTFKPDLKKFNMTELEDDVVA 238

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
            + K     A   G         K +  +    +     F   +  YL    ++R+    
Sbjct: 239 LMSKRVFDIAGCLG---------KSVKVELNGKQIPVKSFTDYVDLYLSAANKSRTEDPL 289

Query: 286 EIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKY 345
              T K           E  ++  E   +  S+ N+I T +GGTH   +   +T  I   
Sbjct: 290 PRLTEKV------NDRWEVCVSLSEGQFQQVSFVNSIATIKGGTHVDYVTSQITNHIV-- 341

Query: 346 AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
           A + +  +  ++ + ++       ++  I  P F  QTK  L    +    +  L + F 
Sbjct: 342 AAVNKKNKNANVKAHNVKNHLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEDFL 401

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTE 465
             + +     + ++E ++  ++ +  +  ++    KT    +      A+     +    
Sbjct: 402 KKVGK-----SGVVENLLSWADFKQNKDLKKSDGAKTGRVLVEKLDDAAEAGGKNSRLCT 456

Query: 466 LFIVEGDSAGG---SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           L + EGDSA     + +     +   V PLRGK+LNV  A + +I NN++I +L + LG 
Sbjct: 457 LILTEGDSAKSLALAGRSVLGNNYCGVFPLRGKLLNVREASTTQITNNKEIENLKKILGL 516

Query: 523 RTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK-HLFLISPPLF 580
           +   +Y   + LRY +++IMTD D DG+HI  LL+ F +     L++    L     P+ 
Sbjct: 517 KQNMKYENVNSLRYGQMMIMTDQDHDGSHIKGLLINFIHSFWPSLLQVPSFLVEFITPIV 576

Query: 581 RITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           + T+    K +  +     ++  E  K +  G  +I  +KGLG   A + KE   +    
Sbjct: 577 KATRKGTKKVLSFYSMPEYEEWKESLKGNATG-WDIKYYKGLGTSTAEEGKEYFSNLGLH 635

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
               V   +D    +  + + +K    K + R  ++   
Sbjct: 636 KKDFV--WEDEQDGEAIELAFSK---KKIEARKNWLSSY 669


>gi|196230803|ref|ZP_03129664.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Chthoniobacter flavus Ellin428]
 gi|196225144|gb|EDY19653.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Chthoniobacter flavus Ellin428]
          Length = 613

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 191/663 (28%), Positives = 287/663 (43%), Gaps = 73/663 (11%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTD-----EKALHHLFSEVIDNAMDEVIAGYAN 95
           + NY  +SI+ L  LE +R+RPGMYIG        E  ++ L  E +DN +DE   G+  
Sbjct: 2   ASNYTEASIKTLSSLEHIRLRPGMYIGRLGNGAHAEDGIYVLLKETVDNCIDEFTMGFGK 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            IEV +     + V D GRGIP+           L   ++ ++ G K+D+ T++ + GL+
Sbjct: 62  KIEVEV-EERSVRVRDYGRGIPLGK---------LVDCVSIINTGAKYDSETFQKAVGLN 111

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG   VNAL+        R+      +F +G   S  +   K   + GT I F PD  +
Sbjct: 112 GVGQKAVNALALSYRAQAIREGDTKVVEFEKGRLKSESKV-TKTTERNGTFIEFTPDEAL 170

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           FG    F A  +  M  + A+L+  +    +                F    GLK  L  
Sbjct: 171 FGKDFRFRAEFIEDMLWNYAFLNRGLTLTLNGK-------------PFRSQNGLKDLLTK 217

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGL 334
           +L    L       G           +E A+       E    + N   T  GGTH +  
Sbjct: 218 ELNGEPLYPIIHLEGD---------DIEIAMTHGNHYGEEYWSFVNGQHTTMGGTHLAAF 268

Query: 335 RVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA-- 392
           R AL   ++ +      K+     + D+  S    +SV ++EP F  QTKTKL S +   
Sbjct: 269 REALVATVRNHF-----KK--DYDAADIRQSIDAAVSVRVQEPVFESQTKTKLGSTEIGP 321

Query: 393 -----QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL 447
                +  V   ++   D +L +N   A  +   + +  EER      R + ++ A +  
Sbjct: 322 GGPSLKEFVGKFMQQALDTFLHKNREVAEIIKGKIEQNEEERKELAGIRNIAKERAKKAS 381

Query: 448 RLPGKLADCS------QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
               KL DC          A  + LFIVEGDSA GS    R+   QAV  L+GK LN   
Sbjct: 382 LHNRKLRDCRLHLGDRNPRAEESTLFIVEGDSAAGSLTSTRDVQTQAVFALKGKPLNTFG 441

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
              + I  N++   L  AL          + LRY +++I TDADVDG HI  LL++FF Q
Sbjct: 442 LTKKIIYENEEFHLLQSALNIEDGL----DGLRYNRIVIATDADVDGMHIRLLLISFFLQ 497

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
              D+I   HL+++  PLFR+     + Y + E+ KQ  +           EI+RFKGLG
Sbjct: 498 YFPDVIRNNHLYILQTPLFRVRNKKVTQYCYSEQEKQAAMARLGASH----EITRFKGLG 553

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           E+ A + K+         L  V ++   +S     + +   MG    ER +FI +     
Sbjct: 554 EISAGEFKDFIG--ENIRLDPVNLHHLYSS----DELLTFFMGKNTPERQEFIIDNLRVE 607

Query: 682 DDV 684
            D+
Sbjct: 608 KDL 610


>gi|47226022|emb|CAG04396.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1345

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 133/709 (18%), Positives = 245/709 (34%), Gaps = 85/709 (11%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE----------------------K 72
               S    Y          LE + +RP  YIG  +                        
Sbjct: 16  PKRLSVERIYQKK-----TQLEHILLRPDSYIGSVEPVTQQMWVYDEDVGLNCRDVTFVP 70

Query: 73  ALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTL 130
            L+ +F E++ NA D        + I+VS+D  N  + + +NG+GIPV  H K       
Sbjct: 71  GLYKIFDEILVNAADNKQRDKTMSCIKVSIDVENNTIVIWNNGKGIPVVEH-KVEKVYVP 129

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVT--VARQNTIFSQKFSRGI 188
            +I   L     +D+   +++GG +G G  + N  S +  V          F Q +   +
Sbjct: 130 ALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKESKKTFKQTWYDNM 189

Query: 189 PLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
             +          +  T ITFRPD              A + +     A  +  ++  ++
Sbjct: 190 GRAGDANIRSFDGEEYTCITFRPDLAKFKMSILDKDTVALMTRRAYDIAGSTKGIRVYFN 249

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK------------ 294
             K           + +    G  T  +      ++    +   +               
Sbjct: 250 GKKLPVCCGFT-CVDRWCHRKGEFTTSEKMCGLFNVCGHYMSLCEIRMIVFIFQVTGFRS 308

Query: 295 --------------------KGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGL 334
                                       E  +   E+  +  S+ N+I T +GG H   +
Sbjct: 309 YVDLYVKDKVDEMGNALNVVHEVVNERWEVCLTMSEKGFQQVSFVNSIATTKGGRHVDYV 368

Query: 335 RVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
              +   + +     +NK  +++    +       ++  +  P F  QTK  +       
Sbjct: 369 ADQVVSKLIE-VVKKKNKAGVAVKPFQVKNHMWLFVNCLVENPTFDSQTKENMTLQQKSF 427

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454
                L D F      + I  + +      + + + +  K+    + T I+ +       
Sbjct: 428 GSTCPLSDKFIKQATASGIVESIMNW---VKFKAQSQLNKKCSAVKHTKIKGVPKLDDAN 484

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           D     + G  L + EGDSA   A        R    V PLRGK+LNV  A  ++I  N 
Sbjct: 485 DAGGKNSIGCTLILTEGDSAKTLAVSGLGVVGRDRYGVFPLRGKMLNVREASLKQIMENA 544

Query: 512 QIMDLVQALGCRTRSQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
           +I ++++ LG + +  Y + +    LRY K++IMTD D DG+HI  LL+ F +     L+
Sbjct: 545 EINNIIKILGLQYKKNYSDPESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLL 604

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
               +     P+ + +     +  +         E    H     +I  +KGLG   + +
Sbjct: 605 RHNFIEEFITPIIKASHKKTQLSFYSIPEFSAWKESQANH--KSWKIKYYKGLGTSTSQE 662

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
            KE   D  +   +  +        +    + +K    K +ER +++ +
Sbjct: 663 AKEYFSDMQRHR-IPFKYA-GPEDDEAITLAFSK---KKVEERKEWLTK 706


>gi|195164670|ref|XP_002023169.1| GL21103 [Drosophila persimilis]
 gi|194105254|gb|EDW27297.1| GL21103 [Drosophila persimilis]
          Length = 1451

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 139/685 (20%), Positives = 256/685 (37%), Gaps = 73/685 (10%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----------------------E 71
               S    Y   S      LE + +RP  YIG  +                        
Sbjct: 4   GNALSIEQMYQKKS-----QLEHILLRPDSYIGSVEFTKELMWVYDFEKARMIQREIAFV 58

Query: 72  KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKST 129
             L+ +F E++ NA D        N I++ +D     +++ +NG+GIPV  H K      
Sbjct: 59  PGLYKIFDEILVNAADNKQRDKSMNTIKIDIDAEKNVVSIWNNGQGIPVTMH-KEQKMYV 117

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG-- 187
             +I   L     +++   +++GG +G G  + N  S    V  A +    + K + G  
Sbjct: 118 PTMIFGHLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSTSFTVETATKQYKKNFKQTWGSN 177

Query: 188 IPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
           +  +     +       TRITF PD              A + +     A  S  V    
Sbjct: 178 MSKASDVTIKDFNGTDFTRITFSPDLAKFKMERLDEDIVALMSRRAFDVAASSKGVSVFL 237

Query: 246 SCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
           + +K   + +              K Y+   ++N+     +      E         E A
Sbjct: 238 NGNKLTVKNF--------------KDYIDLHVKNQDDDCGQPIKIVHE---VANERWEVA 280

Query: 306 IAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
               +   +  S+ N+I T +GG H   +   + + + +     +NK  I+I    +   
Sbjct: 281 CCPSDRGFQQVSFVNSIATTKGGRHVDHVVDNVIKQLIE-VLKKKNKGGINIKPFQVRNH 339

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
               ++  I  P F  QTK  +         +  L + F   L +     + ++E V+  
Sbjct: 340 LWIFVNCLIENPTFDSQTKENMTLQAKGFGSKCTLSEKFISSLSK-----SGIVESVLAW 394

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLAD-CSQNIAHGTELFIVEGDSAGGSAKQA--- 481
           ++ + +    +   RK++  K     + A+      +    L + EGDSA   A      
Sbjct: 395 AKFKAQNDIAKTGGRKSSKIKGIPKLEDANEAGGKNSINCTLILTEGDSAKSLAVSGLGV 454

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED----LRYEK 537
             R+   V PLRGK+LNV  A  +++  N +I +L + +G + + +Y  ED    LRY K
Sbjct: 455 IGRNYYGVFPLRGKLLNVREANFKQLSENAEINNLCKIIGLQYKKKYLTEDDLKTLRYGK 514

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           V+IMTD D DG+HI  LL+ F +    +L+    L     P+ ++T+  + +  +     
Sbjct: 515 VMIMTDQDQDGSHIKGLLINFVHTNWPELLRLPFLEEFITPIVKVTKKNEELSFYSLPEF 574

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           ++   +   H      +  +KGLG   + + KE   D  +  +L            +   
Sbjct: 575 EEWKMDTPNHHT--YNVKYYKGLGTSTSKEAKEYFQDMERHRILF--KYDGQVDDDNIMM 630

Query: 658 SINKLMGTKADERFKFIQERASFID 682
           + ++      + R  ++      + 
Sbjct: 631 AFSR---KHIESRKVWLTNHMDEVK 652


>gi|72007795|ref|XP_783546.1| PREDICTED: similar to DNA topoisomeraseII_beta [Strongylocentrotus
           purpuratus]
 gi|115967910|ref|XP_001184546.1| PREDICTED: similar to DNA topoisomeraseII_beta [Strongylocentrotus
           purpuratus]
          Length = 1448

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 142/698 (20%), Positives = 263/698 (37%), Gaps = 69/698 (9%)

Query: 14  PQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-- 71
           P +   ++  +  G           S    Y   S      LE + +RP  YIG T+   
Sbjct: 30  PLNDDIADLPEMGGGDGKPGGKKKLSVERIYQKKS-----QLEHILIRPDTYIGSTEPFT 84

Query: 72  -------------------KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVV 110
                                L+ +F E++ NA D        N I+++LD     +++ 
Sbjct: 85  ETMWVVDDGVMVNREVTYVPGLYKIFDEILVNAADNKQRDPTMNCIKITLDKEQNLISIW 144

Query: 111 DNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELH 170
           +NG+GIPV  H K       E+I   L     +++   +++GG +G G  + N  S +  
Sbjct: 145 NNGKGIPVVEH-KGEKMFVPEMIFGHLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSTKFT 203

Query: 171 VT--VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAAR 226
           V          F Q +   +  +   K         T +TF PD   F          A 
Sbjct: 204 VVTACKEYKKKFKQSWHNNMSKTTSPKITPFEGTDFTEVTFNPDLSKFKMTELDADTMAL 263

Query: 227 LLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSE 286
           L +     A  S  VK   +  +                  G K+Y+   ++++   +  
Sbjct: 264 LTRRAYDLAGGSKGVKVFLNGKRLPV--------------NGFKSYVDLYIKDKVDETGN 309

Query: 287 IFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYA 346
                 E+        E  +   E+  +  S+ N+I T +GG H   +   +   I +  
Sbjct: 310 RLKLVHEQ---VNPRWEVCVCLSEKGFQQVSFVNSIATTKGGRHVDYVSDQIVNQIIQ-T 365

Query: 347 ELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
              +NK  I+I    +       ++  I  P F  QTK  +     +      L + F  
Sbjct: 366 VKKKNKAGINIKPFQVRSHIWVFVNCAIENPTFDSQTKENMTLQIKKFGSTCKLSEKFVK 425

Query: 407 YLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
               N      +L W+  +++   +  K+   ++ + I+ +             +    L
Sbjct: 426 -AAANCGIVENILSWMKFKAQS--QLDKKCHTSKHSKIKGVPKLDDANSAGGKNSSVCTL 482

Query: 467 FIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523
            + EGDSA   A        R +  V PLRGK+LNV  A  ++I  N +I ++++ LG +
Sbjct: 483 ILTEGDSAKSLAVSGLGVVGRDHYGVFPLRGKLLNVREASHKQIMENAEINNIIKILGLQ 542

Query: 524 TRSQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
            +++Y   +    LRY +++IMTD D DG+HI  LL+ F +     L+++  L     P+
Sbjct: 543 YKNKYDSPESLKSLRYGRLMIMTDQDQDGSHIKGLLINFIHSNWPHLLQRNFLEEFITPI 602

Query: 580 FRITQGTK-SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
            + ++  + ++  +     +K  +          ++  +KGLG     + KE   D  + 
Sbjct: 603 VKASKANETTLPFYSLPEFEKWKD--ATDNWKTWKVKYYKGLGTSTMKEAKEYFTDMERH 660

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
             +  E     +       + +K    K ++R  ++ E
Sbjct: 661 R-IPFEYTGPDDDAA-IVLAFSK---KKVEDRKVWLSE 693


>gi|324500583|gb|ADY40270.1| DNA topoisomerase 2 [Ascaris suum]
          Length = 1514

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 138/694 (19%), Positives = 252/694 (36%), Gaps = 71/694 (10%)

Query: 28  EIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD----------------- 70
           +     A    S    Y   S      LE + +RP  YIG  +                 
Sbjct: 12  DEEKENANKRISIERIYQKKS-----QLEHILLRPDTYIGSVEYTERAPMWVYDAELERI 66

Query: 71  -------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGNG-FLTVVDNGRGIPVENH 121
                     L+ +F E++ NA D        N+I+V++D     +TV +NG+GIPV  H
Sbjct: 67  VQRDITYVPGLYKIFDEILVNAADNKQRDPKMNVIKVTIDKENCEITVFNNGKGIPVVLH 126

Query: 122 PKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDEL--HVTVARQNTI 179
            K       E+I  TL     +D++  +++GG +G G  + N  S       +       
Sbjct: 127 -KTEKVFVPELIFGTLLTSSNYDDTERKVTGGRNGYGAKLCNVFSTRFTIETSSKEYGKS 185

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYL 237
           F Q +   +      +  K + +  T++TFRPD       +      A + +     A  
Sbjct: 186 FKQTWVNNMTKEREPEIGKSKGEDFTKVTFRPDLAKFRMTELDDDIVALMSRRAFDIAGS 245

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  VK   +  +   +              G K Y++  ++       E +    E+   
Sbjct: 246 TRGVKVFLNHKQLPVQ--------------GFKQYVEQYVKYNVNAQGEPYGFIYEQVNN 291

Query: 298 HRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA-IS 356
                E A+   E   +  S+ N+I T +GG H   +   +T  +    +    K   I+
Sbjct: 292 ---RWEVALTVSERGFQQVSFANSIATTKGGRHVDYIVDQVTAKLIDIIKKKVGKSGGIN 348

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           +    +       ++  I  P F  Q+K  +         +  L D    ++        
Sbjct: 349 VKPFQVRNHMWVFVNALIENPTFDSQSKETMTLQAKSFGSKCELSD---KFIQSTMKCGI 405

Query: 417 KLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
                   R +++    K+    + + ++ +       D     +    L + EGDSA  
Sbjct: 406 VEAVMAWVRFKQQESLDKKCSSKKTSKLKGVPKLEDANDAGTKNSSHCTLILTEGDSAKS 465

Query: 477 SAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED- 532
            A        R    V PLRGK+LNV     ++I  N +I  L++ +G + R +Y  +D 
Sbjct: 466 LAVSGLGVVGRDRYGVFPLRGKMLNVREGNHKQIMENVEINALLKIIGLQYRLKYENDDD 525

Query: 533 ---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV 589
              LRY KV++M D D DG+HI  L++ F +     LI +  +     P+ + T+G +  
Sbjct: 526 MKTLRYGKVMVMADQDQDGSHIKGLVINFIHFNWPALIRRNFVEEFITPIVKATKGKEEF 585

Query: 590 YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDL 649
                    +              I  +KGLG   + + KE   D  +   +R       
Sbjct: 586 SFFSLPEYAEWRN--NTENWKSYRIKYYKGLGTSTSKEAKEYFTDMARHR-IRFRYGGQD 642

Query: 650 NSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
           + +     + +K    + ++R  ++    +   +
Sbjct: 643 DDM-SLDMAFSK---KRIEDRKTWLTSWMAERKN 672


>gi|25006381|dbj|BAC24010.1| DNA topoisomerase II [Trichophyton rubrum]
          Length = 1097

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 137/675 (20%), Positives = 259/675 (38%), Gaps = 64/675 (9%)

Query: 48  SIRILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDN 84
             + +  LE +  RP  YIG  +                          L+ +F E++ N
Sbjct: 1   QYQKITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVN 60

Query: 85  AMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142
           A D        + I V+LD   G ++V +NGRGIPVE H K       E+I   L     
Sbjct: 61  AADNKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKK-EQIYIPELIFGHLLTSSN 119

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK--FSRGIPLSPLEKKEKVR 200
           +++   +++GG +G G  + N  S E  V  A        K  ++  +      K  + +
Sbjct: 120 YNDMQEKVTGGRNGYGAKLCNIFSKEFTVETADSKQKKKFKLTWTNNMSTMGKAKITECK 179

Query: 201 NKRGTRITFRPDP-KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
               T++TF+PD  K   D    D   L+K        +       +  +   + +    
Sbjct: 180 GDDYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCGTAVKLNGTRIPIKSFKKYM 239

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYC 319
           +         +    T   +++ I +E          +     E      + + +  S+ 
Sbjct: 240 EMYTKAIKAERGEDPTSASDKNDIITE----------SPDRRWEIGFTVSDGSFQQVSFV 289

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEF 379
           N+I T  GGTH + +   +   +   A   +NK   ++ +  +       ++  I  P F
Sbjct: 290 NSIATTSGGTHVNYISDQICNKLAD-ALKKKNKTGATLKATQIKNHIFLFVNSQIVNPAF 348

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN 439
             QTK +L +  +Q   +  + D F   +++  +        ++  +E++  +  ++   
Sbjct: 349 TSQTKEQLTTRPSQFGSKCVVSDDFLKKVMKTRVMDD-----ILHFAEKKADQILKKTDG 403

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKI 496
            + +                  H   L + EGDSA G A   R         V PLRGK+
Sbjct: 404 NRRSRMNNPKLTDANKAGTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKL 463

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLL 555
           LNV  A  ++I  N +I ++   +G + + +Y +   LRY  ++IMTD D DG+HI  LL
Sbjct: 464 LNVRDASVDQISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDYDGSHIKGLL 523

Query: 556 LTFFYQEMYDLIEQ-KHLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGK 609
           + +       L++    L     P+ ++ +G     T +         ++  E       
Sbjct: 524 INYLQVAFPTLLKIPGFLIEFITPIVKVWKGDPKNPTHTKSFFTLPEYEEWKEAHA--HD 581

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669
            K +   +KGLG       +    D ++       +       +  + + +K    KADE
Sbjct: 582 KKWQKKYYKGLGTSSTEDAQIYFQDLDRHLKQFHTLQD--KEAELIELAFSK---KKADE 636

Query: 670 RFKFIQE--RASFID 682
           R +++++    +++D
Sbjct: 637 RKEWLRQFKPGTYLD 651


>gi|242062820|ref|XP_002452699.1| hypothetical protein SORBIDRAFT_04g030880 [Sorghum bicolor]
 gi|241932530|gb|EES05675.1| hypothetical protein SORBIDRAFT_04g030880 [Sorghum bicolor]
          Length = 1452

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 143/700 (20%), Positives = 262/700 (37%), Gaps = 72/700 (10%)

Query: 20  SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD--------- 70
           +  L  S     +     ++  + Y          LE + +RP  YIG  +         
Sbjct: 2   AGPLHSSSGHNAAAGGGGKTIEEMYQKK-----TQLEHILLRPDTYIGSVEKHTQPLWVF 56

Query: 71  ------------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGNGF-LTVVDNGRGI 116
                          L+ +F E++ NA D        + + V +D +G  ++V +NG GI
Sbjct: 57  EDGAMVNRSVTYVPGLYKIFDEILVNAADNKQRDPKMDALRVQIDVDGCCISVYNNGDGI 116

Query: 117 PVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA-- 174
           PVE H +       E+I   L     ++++  + +GG +G G  + N  S E  +  A  
Sbjct: 117 PVEIHQE-ERVYVPEMIFGHLLTSSNYNDNEKKTTGGRNGYGAKLTNIFSTEFVIETADG 175

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKA--GFDAARLLKMT 231
           R+   + Q FS  +      +  K +  +  TR+TF+PD   F          A + K  
Sbjct: 176 RRQKKYKQVFSENMGKKSEPQITKCKQGENWTRVTFKPDLAKFNMAHLEEDVVALMRKRV 235

Query: 232 QSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGK 291
              A   G+        + +  K                 Y+   +++ +    + F   
Sbjct: 236 VDMAGTLGKTVKVELDGQRVPIKSF-------------SDYVNLYMKSANCDRPDNFKTI 282

Query: 292 TEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN 351
            E         E  +   E   +  S+ N I T  GGTH   +   +   +     + + 
Sbjct: 283 YENND----RWEVCVCQSEGQFQQVSFVNRIATIRGGTHVDYITNQIANHV--MTVVNKK 336

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
            +  ++   ++       ++  I  P F  QTK  L +       +  L   F   + + 
Sbjct: 337 NKNANMKLHNVKSHLWVFVNALIDNPAFDSQTKETLTTRQGSFGSKFELSIDFLKKVEK- 395

Query: 412 PIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD-CSQNIAHGTELFIVE 470
               + ++E V+  ++ +L +  ++    K +        + A+      +    L + E
Sbjct: 396 ----SSIIENVLSWADFKLSKELKKTDGSKKSRISGIPKLEDANEAGGKDSEKCTLILTE 451

Query: 471 GDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           GDSA   A        R    V PLRGK+LNV  A  ++I  N +I ++ Q LG +   Q
Sbjct: 452 GDSAKALAMSGIAVVGRDYYGVFPLRGKLLNVREANHKQIMENAEIQNIKQILGLQHGKQ 511

Query: 528 YREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE-QKHLFLISPPLFRITQG 585
           Y     LRY  ++IMTD D DG+HI  LL+ F +     L++ +  L     P+ + T+G
Sbjct: 512 YASAKGLRYGHLMIMTDQDHDGSHIKGLLINFIHSFWPSLLKVESFLVEFVTPIIKATRG 571

Query: 586 TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645
             ++  +     ++              I  +KGLG   A + +E   D        V  
Sbjct: 572 KTTISFYTMPEYEEWRTNLGASA-SSWTIKYYKGLGTSTAKEGREYFKDITDHKKDFV-- 628

Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQ--ERASFIDD 683
            +D       + + +K    +  +R  ++   +  ++ID 
Sbjct: 629 WEDDQDGNHIELAFSK---KRIADRKLWLTNFQPGTYIDQ 665


>gi|15229538|ref|NP_189031.1| TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA
           topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/
           DNA-dependent ATPase [Arabidopsis thaliana]
 gi|1174740|sp|P30182|TOP2_ARATH RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|474890|gb|AAA65448.1| topoisomerase II [Arabidopsis thaliana]
 gi|9294657|dbj|BAB03006.1| DNA topoisomerase II [Arabidopsis thaliana]
          Length = 1473

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 147/699 (21%), Positives = 275/699 (39%), Gaps = 70/699 (10%)

Query: 14  PQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGG----- 68
           P    ++  + K+     + A   ++  + Y   S      LE + +RP  YIG      
Sbjct: 6   PLQNSNAANVAKAPAKSRAAAGG-KTIEEMYQKKS-----QLEHILLRPDTYIGSIEKHT 59

Query: 69  ----------------TDEKALHHLFSEVIDNAMDEVIAG-YANLIEVSLD-GNGFLTVV 110
                           T    L+ +F E++ NA D        + ++V +D     ++V 
Sbjct: 60  QTLWVYEKDEMVQRPVTYVPGLYKIFDEILVNAADNKQRDAKMDSVQVVIDVEQNLISVC 119

Query: 111 DNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELH 170
           ++G G+PVE H +       E+I   L     +D++  + +GG +G G  + N  S E  
Sbjct: 120 NSGAGVPVEIHQE-EGIYVPEMIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFI 178

Query: 171 VTVARQNTIFSQK--FSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK--AGFDAA 225
           +  A    +   K  F   +         K  +++  T++TF+PD K F          A
Sbjct: 179 IETADGKRLKKYKQVFENNMGKKSEPVITKCNKSENWTKVTFKPDLKKFNMTELEDDVVA 238

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
            + K     A   G         K +  +    +     F   +  YL    ++R+    
Sbjct: 239 LMSKRVFDIAGCLG---------KSVKVELNGKQIPVKSFTDYVDLYLSAANKSRTEDPL 289

Query: 286 EIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKY 345
              T K           E  ++  E   +  S+ N+I T +GGTH   +   +T  I   
Sbjct: 290 PRLTEKV------NDRWEVCVSLSEGQFQQVSFVNSIATIKGGTHVDYVTSQITNHIV-- 341

Query: 346 AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
           A + +  +  ++ + ++       ++  I  P F  QTK  L    +    +  L + F 
Sbjct: 342 AAVNKKNKNANVKAHNVKNHLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEDFL 401

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTE 465
             + +     + ++E ++  ++ +  +  ++    KT    +      A+     +    
Sbjct: 402 KKVGK-----SGVVENLLSWADFKQNKDLKKSDGAKTGRVLVEKLDDAAEAGGKNSRLCT 456

Query: 466 LFIVEGDSAGG---SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           L + EGDSA     + +     +   V PLRGK+LNV  A + +I NN++I +L + LG 
Sbjct: 457 LILTEGDSAKSLALAGRSVLGNNYCGVFPLRGKLLNVREASTTQITNNKEIENLKKILGL 516

Query: 523 RTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK-HLFLISPPLF 580
           +   +Y   + LRY +++IMTD D DG+HI  LL+ F +     L++    L     P+ 
Sbjct: 517 KQNMKYENVNSLRYGQMMIMTDQDHDGSHIKGLLINFIHSFWPSLLQVPSFLVEFITPIV 576

Query: 581 RITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           + T+    K +  +     ++  E  K +  G  +I  +KGLG   A + KE   +    
Sbjct: 577 KATRKGTKKVLSFYSMPEYEEWKESLKGNATG-WDIKYYKGLGTSTAEEGKEYFSNLGLH 635

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
               V   +D    +  + + +K    K + R  ++   
Sbjct: 636 KKDFV--WEDEQDGEAIELAFSK---KKIEARKNWLSSY 669


>gi|56807931|ref|ZP_00365753.1| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), B subunit [Streptococcus pyogenes M49 591]
          Length = 524

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 182/534 (34%), Positives = 287/534 (53%), Gaps = 32/534 (5%)

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218
           VVNALS  L V + R  +++ Q+F  G  P++ L+K     ++K GT +TF PD KIF  
Sbjct: 1   VVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFST 60

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    + +  +  A+L   VK   +  +        P  EEF++  G++ +++   E
Sbjct: 61  I-DFKFNTISERLKESAFLLKNVKMSLTDLRGDD-----PIIEEFHYENGVQDFVEYLNE 114

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVA 337
           ++  ++  I+    ++       VE A+ + +   +   S+ N + T +GG+HE+GL+ A
Sbjct: 115 DKETLTPVIYMEGQDQD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSA 170

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
           +T+ +  YA  T    ++  ++   D       +LS+ + E   +F GQTK KL S  A+
Sbjct: 171 ITKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLAR 230

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---P 450
             VE+ + +    +L++N   A+ L+   I+  + R   RK R+ +R     K       
Sbjct: 231 PIVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLS 290

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL       A   EL++VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A    I  N
Sbjct: 291 GKLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKN 350

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  +V  +G    + +  ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  
Sbjct: 351 EEINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETG 410

Query: 571 HLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           H+++  PPL+++++G     K  YA  +   + +  EF K       + R+KGLGEM A+
Sbjct: 411 HVYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI----LQRYKGLGEMNAN 466

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           QL ET MD   RTL+RV I+     L   +  ++ LMG KA  R ++I++   F
Sbjct: 467 QLWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 516


>gi|297621779|ref|YP_003709916.1| DNA topoisomerase IV, subunit B [Waddlia chondrophila WSU 86-1044]
 gi|297377080|gb|ADI38910.1| DNA topoisomerase IV, subunit B [Waddlia chondrophila WSU 86-1044]
          Length = 605

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 186/656 (28%), Positives = 310/656 (47%), Gaps = 68/656 (10%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYAN 95
           +  YD ++I+ L+ LE +R R GMYIG        +  ++ L  EVIDN +DE I G  N
Sbjct: 2   AKKYDETTIQTLDALEHIRKRTGMYIGRLGDGSHYDDGIYILIKEVIDNCIDEFIMGNGN 61

Query: 96  LIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
            I ++ D + G +TV D GRGIP+           +E + + ++ G K+++  ++ S GL
Sbjct: 62  QILITKDQDLGKITVRDFGRGIPLGK--------VIECV-SQINTGAKYNDDVFQFSVGL 112

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           +GVG   VNALS    V   R+      +FS+G      +   K + K GT + F PD +
Sbjct: 113 NGVGTKAVNALSSRFLVRSHREGKFVEAEFSKGRLQKDKK--GKTQEKDGTYVEFIPDSE 170

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     FD   ++K   +  YL+  +   ++ ++  ++              GL   L 
Sbjct: 171 IFKSF-KFDDEYIVKRLWNYVYLNTGLTINYNGERIRSDH-------------GLLDLLN 216

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
            ++    L     +  K          +E+A    +       S+ N   T +GGTH S 
Sbjct: 217 QEVSEEGLYEPLHYKSK---------QLEFAFLHTQSYGESYFSFVNGQYTSDGGTHLSA 267

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            R  L +G+ +YA     K+  +    D+     G +++ I++P F  QTK KL + + +
Sbjct: 268 FREGLLKGVNEYA-----KK--NFQGVDVREGVFGTVAIRIQDPVFESQTKNKLGNTEIR 320

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
             +   +++   + L ++P  A K++E +    + R      ++  ++   +      KL
Sbjct: 321 APLVQEVKEAVVNLLFKHPSTAKKIIERIAFNEKVRKELSAVKKEAKEKQKKISFKIPKL 380

Query: 454 ADCSQN------IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            D   +       A  T +F+ EGDSA  S   +R+   QAV  LRGK LNV     +++
Sbjct: 381 RDSKYHFGDGSKYAEKTMIFLTEGDSASASIVSSRDPLTQAVFSLRGKPLNVFGMKMDQL 440

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N+++ +++ AL           +LRYEKV++ TDADVDG HI +LL+T F      L+
Sbjct: 441 YKNEEMFNVMSALNIE----EDISNLRYEKVVLATDADVDGMHIRNLLITLFLTYFEGLV 496

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
              HL+++  PLF++    K++Y +     +K  E+  K  K  +EI+RFKGLGE+   +
Sbjct: 497 LNGHLYILETPLFKVRNKEKTIYCYS----EKEKEKAVKELKKGVEITRFKGLGEISPQE 552

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
            K+  +  + R L+ V     +NS  D + ++   MG    ER KFI       D 
Sbjct: 553 FKQ-FIGPDIR-LIPV----AVNSFSDIKPTLQFYMGKNTPERKKFIMNNLVNEDQ 602


>gi|51467892|ref|NP_001003834.1| DNA topoisomerase 2-alpha [Danio rerio]
 gi|49619131|gb|AAT68150.1| topoisomerase 2 [Danio rerio]
          Length = 1574

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 136/661 (20%), Positives = 252/661 (38%), Gaps = 64/661 (9%)

Query: 50  RILEGLEPVRMRPGMYIGGTDE----------------------KALHHLFSEVIDNAMD 87
           +    LE + +RP  YIG  +                         L+ +F E++ NA D
Sbjct: 34  QKKTQLEHILLRPDTYIGSVEPVTQQMWVFDEDTGMNCRDITFVPGLYKIFDEILVNAAD 93

Query: 88  EVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
                   N I+V++D  N  ++V +NG+GIPV  H K        +I   L     +D+
Sbjct: 94  NKQRDKTMNCIKVNIDPENNTISVWNNGKGIPVVEH-KVEKVYVPALIFGQLLTSSNYDD 152

Query: 146 STYEISGGLHGVGISVVNALSDELHVT--VARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
              +++GG +G G  + N  S +  V          F Q +   +  +   K +      
Sbjct: 153 DEKKVTGGRNGYGAKLCNIFSLKFTVETACRESKRCFKQTWFDNMERAGESKIKPFDGDD 212

Query: 204 GTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
            T ITF+PD              A L +     A  +  V+   +  +            
Sbjct: 213 YTCITFQPDLAKFKMQALDKDTVALLTRRAYDIAGSTKGVRVLLNGKRLPI--------- 263

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
                   +TY+   ++++   +    T   E         E  +   E+  +  S+ N+
Sbjct: 264 -----NNFRTYVDLYVKDKVDETGSPLTVVHEM---VNERWEVCLTLSEKGFQQVSFVNS 315

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
           I  ++GG H   +   +   + +     +NK  +++    +       ++  I  P F  
Sbjct: 316 IDKNKGGRHTDYVADQIVSKLIE-VVKKKNKAGVAVKPFQVKNHMWLFVNCLIENPSFDS 374

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK  +           +L D F             ++ WV  +++ +L ++      + 
Sbjct: 375 QTKENMTLQQKNFGSACSLSDKFVK-QANGCGIVESIMNWVKFKAQAQLNKKCS--AVKH 431

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILN 498
           T I+ +       D     ++   L + EGDSA   A        R    V PLRGK+LN
Sbjct: 432 TKIKGVPKLDDANDAGGKNSNSCTLILTEGDSAKTLAVSGLGVVGRDRYGVFPLRGKMLN 491

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREED----LRYEKVIIMTDADVDGAHIASL 554
           V  A  ++I  N +I ++++ LG + +  Y + +    LRY K++IMTD D DG+HI  L
Sbjct: 492 VREASHKQIMENAEINNIIKILGLQYKKNYSDPESLKSLRYGKLMIMTDQDQDGSHIKGL 551

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           L+ F +     L+    L     P+ + +   + +  +      +  E  K+      +I
Sbjct: 552 LINFIHHNWPSLLRHNFLEEFITPIIKASNKKQEISFYSIPEFTEWKE--KQSSIKSWKI 609

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
             +KGLG   + + KE   D  +   +  + +      +    + +K M    +ER +++
Sbjct: 610 KYYKGLGTSTSKEAKEYFSDMTRHR-IPFKYS-GPADDEAITLAFSKKM---IEERKEWL 664

Query: 675 Q 675
            
Sbjct: 665 T 665


>gi|198473349|ref|XP_001356262.2| GA10169 [Drosophila pseudoobscura pseudoobscura]
 gi|198139416|gb|EAL33325.2| GA10169 [Drosophila pseudoobscura pseudoobscura]
          Length = 1450

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 139/685 (20%), Positives = 256/685 (37%), Gaps = 73/685 (10%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----------------------E 71
               S    Y   S      LE + +RP  YIG  +                        
Sbjct: 4   GNALSIEQMYQKKS-----QLEHILLRPDSYIGSVEFTKELMWVYDFEKARMIQREIAFV 58

Query: 72  KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKST 129
             L+ +F E++ NA D        N I++ +D     +++ +NG+GIPV  H K      
Sbjct: 59  PGLYKIFDEILVNAADNKQRDKSMNTIKIDIDAEKNVVSIWNNGQGIPVTMH-KEQKMYV 117

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG-- 187
             +I   L     +++   +++GG +G G  + N  S    V  A +    + K + G  
Sbjct: 118 PTMIFGHLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSTSFTVETATKQYKKNFKQTWGSN 177

Query: 188 IPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
           +  +     +       TRITF PD              A + +     A  S  V    
Sbjct: 178 MSKASDVTIKDFNGTDFTRITFSPDLAKFKMERLDEDIVALMSRRAFDVAASSKGVSVFL 237

Query: 246 SCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
           + +K   + +              K Y+   ++N+     +      E         E A
Sbjct: 238 NGNKLTVKNF--------------KDYIDLHVKNQDDDCGQPIKIVHE---VANERWEVA 280

Query: 306 IAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
               +   +  S+ N+I T +GG H   +   + + + +     +NK  I+I    +   
Sbjct: 281 CCPSDRGFQQVSFVNSIATTKGGRHVDHVVDNVIKQLIE-VLKKKNKGGINIKPFQVRNH 339

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
               ++  I  P F  QTK  +         +  L + F   L +     + ++E V+  
Sbjct: 340 LWIFVNCLIENPTFDSQTKENMTLQAKGFGSKCTLSEKFISSLSK-----SGIVESVLAW 394

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLAD-CSQNIAHGTELFIVEGDSAGGSAKQA--- 481
           ++ + +    +   RK++  K     + A+      +    L + EGDSA   A      
Sbjct: 395 AKFKAQNDIAKTGGRKSSKIKGIPKLEDANEAGGKNSINCTLILTEGDSAKSLAVSGLGV 454

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED----LRYEK 537
             R+   V PLRGK+LNV  A  +++  N +I +L + +G + + +Y  ED    LRY K
Sbjct: 455 IGRNYYGVFPLRGKLLNVREANFKQLSENAEINNLCKIIGLQYKKKYLTEDDLKTLRYGK 514

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           V+IMTD D DG+HI  LL+ F +    +L+    L     P+ ++T+  + +  +     
Sbjct: 515 VMIMTDQDQDGSHIKGLLINFVHTNWPELLRLPFLEEFITPIVKVTKKNEELSFYSLPEF 574

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           ++   +   H      +  +KGLG   + + KE   D  +  +L            +   
Sbjct: 575 EEWKMDTPNHHT--YNVKYYKGLGTSTSKEAKEYFQDMERHRILF--KYDGQVDDDNIMM 630

Query: 658 SINKLMGTKADERFKFIQERASFID 682
           + ++      + R  ++      + 
Sbjct: 631 AFSR---KHIESRKVWLTNHMDEVK 652


>gi|325299434|ref|YP_004259351.1| DNA topoisomerase type IIA subunit B region 2 domain-containing
           protein [Bacteroides salanitronis DSM 18170]
 gi|324318987|gb|ADY36878.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Bacteroides salanitronis DSM 18170]
          Length = 645

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 188/688 (27%), Positives = 298/688 (43%), Gaps = 97/688 (14%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGY 93
             + +Y   +IR L  +E VR RPGMYIG        E  ++ L  EVIDN++DE   G 
Sbjct: 9   QPTASYTEENIRHLSDMEHVRTRPGMYIGRLGDGSQAEDGIYVLMKEVIDNSIDEFKMGA 68

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
              I++ L+    ++V D GRGIP+          +L   ++ L+ GGK+D   ++ S G
Sbjct: 69  GKRIDIQLEEGLRVSVRDYGRGIPLG---------SLVDAVSMLNTGGKYDTKAFKKSVG 119

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           L+GVG   VNALS        R   +    F RG  +S        + + GT I F PD 
Sbjct: 120 LNGVGAKAVNALSSRFVARSVRDGQMREAIFERGNLISDTT--GPTQEENGTFIFFEPDN 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            +F +   F    +  M ++  YL+  +   ++  +                  GL+  L
Sbjct: 178 TLFLNYH-FRPEFIETMLRNYTYLNTGLSIYYNGKRI-------------VSRNGLEDLL 223

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
              +    L       G+          +E A     +   E  S+ N   T +GGTH+S
Sbjct: 224 NDNMTAPGLYPIVHLKGE---------DIEIAFTHTAQYGEEYYSFVNGQHTTQGGTHQS 274

Query: 333 GLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS--- 389
             +  L R IK++          ++   D+    V  +++ + EP F  QTK KL S   
Sbjct: 275 AFKEHLARTIKEFYG-------KNLEYQDIRNGLVAAIAINVIEPTFESQTKIKLGSLVM 327

Query: 390 ---------------LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
                          +   + V + +++  D+YL ++P  A  +L+ + E  +ER     
Sbjct: 328 APEKDSDGNPYPLSGISVNKFVGDFIKENVDNYLHKHPDVADVVLQKIQESEKERKAIAG 387

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGT--------------ELFIVEGDSAGGSAKQ 480
             ++ R+ A +      KL DC  ++                   +FI EGDSA GS  +
Sbjct: 388 VTKIARERAKKANLHNRKLRDCRIHLNDQKASKKDEENDPRLESSIFITEGDSASGSITK 447

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +R+ + QAV  LRGK LN      + +  N++   L  AL          + LRY KVI+
Sbjct: 448 SRDVNTQAVFSLRGKPLNSFGLTKKVVYENEEFNLLQAALNIEDGL----DGLRYNKVIV 503

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTK----SVYAHDEEH 596
            TDADVDG HI  L++TFF Q   DLI++ H++++  PLFR+    K    ++Y + EE 
Sbjct: 504 ATDADVDGMHIRLLMITFFLQFFPDLIKKGHVYILQTPLFRVRNRKKGVYETIYCYSEEE 563

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
           +   +E+   +     EI+RFKGLGE+   + +          L +V + K         
Sbjct: 564 RLAAIEKLSPN----PEITRFKGLGEISPDEFRNFIG--KDMRLEQVSLRK----TDAVG 613

Query: 657 DSINKLMGTKADERFKFIQERASFIDDV 684
           + +   MG    ER  FI       +D+
Sbjct: 614 ELLEFYMGKNTMERQNFIINNLVVEEDL 641


>gi|330444051|ref|YP_004377037.1| DNA gyrase B [Chlamydophila pecorum E58]
 gi|328807161|gb|AEB41334.1| DNA gyrase B [Chlamydophila pecorum E58]
          Length = 601

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 178/647 (27%), Positives = 293/647 (45%), Gaps = 65/647 (10%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            Y  +SI  L  LE +R+R GMYIG        E  ++ LF EV+DNA+DE I G+ + +
Sbjct: 3   TYSEASIISLASLEHIRLRAGMYIGRLGDGSQPEDGIYTLFKEVVDNAIDEYIMGHGSSL 62

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           E++      LTV D GRGIP+           L    + ++ G K+    +  S GL+GV
Sbjct: 63  EIT-SKENTLTVRDYGRGIPLGK---------LIDCASKINTGAKYTEDVFHYSVGLNGV 112

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+  VNALS E  +   R        + +G+      ++   ++  GT ++F PD +IF 
Sbjct: 113 GLKAVNALSSEFTIRSIRNKKSLKAYYRQGVLQE--TQQSSTKDPNGTEVSFTPDAEIFA 170

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L+K  +   Y+   ++  ++              E F    GLK     ++
Sbjct: 171 NFR-FQQEFLIKKIRQYTYVHPGLEILFN-------------SESFVSKEGLKDLFHAEV 216

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRV 336
              +L     F          +  + +  +  +      TS+ N   T +GGTH S  + 
Sbjct: 217 PQGALYPPIFF---------QKDKLSFIFSHLDTHTERYTSFVNGQETLDGGTHLSAFKE 267

Query: 337 ALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           A+ +GI ++          +  ++D+    +G L++ I  P F  QTK KL +   +  +
Sbjct: 268 AVVKGINEFFG-------KNFATNDIREGLMGCLAIKISSPIFESQTKNKLGNTQIRTPL 320

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++     YL  +   A  LLE +    + R   +  ++  ++   +      KL DC
Sbjct: 321 IKEIKQGIIEYLRSDKATAHLLLEKIKTNEKTRKSIQLIKQGIKENQKKTHYKIPKLRDC 380

Query: 457 SQNIAHGT------ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
             +    +       LF+ EG+SA  S   +R+   QAV  LRGK +NV S    K+  N
Sbjct: 381 KFHYHEQSLYGEASSLFVTEGESASASILASRDPHTQAVFSLRGKPMNVFSLEEAKMYKN 440

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
            ++  L  ALG     ++  + LRY K+I+ TDADVDG HI +LL+TFF +    L+   
Sbjct: 441 DELFYLATALGFA---KHGPQQLRYNKIILATDADVDGMHIRNLLITFFLKSFLSLVTGG 497

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           H+F++  PLF++    +++Y + E+ K   ++   K  K  +EI+RFKGLGE+   + K 
Sbjct: 498 HVFILETPLFKLRNHEQTIYCYSEQEKLAAIQALGK--KSALEITRFKGLGEISPKEFKA 555

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
             +    R L  V I+            +   MG    ER +FI + 
Sbjct: 556 -FIGPKMR-LAPVTISDPSGLPS----LLQFYMGKNTKERKQFILDN 596


>gi|25006383|dbj|BAC24011.1| DNA topoisomerase II [Trichophyton interdigitale]
          Length = 1093

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 136/673 (20%), Positives = 259/673 (38%), Gaps = 64/673 (9%)

Query: 50  RILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDNAM 86
           + +  LE +  RP  YIG  +                          L+ +F E++ NA 
Sbjct: 2   QKITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAA 61

Query: 87  DEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144
           D        + I V+LD   G ++V +NGRGIPVE H K       E+I   L     ++
Sbjct: 62  DNKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKK-EQIYIPELIFGHLLTSSNYN 120

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK--FSRGIPLSPLEKKEKVRNK 202
           +   +++GG +G G  + N  S+E  V  A        K  ++  +      K  + +  
Sbjct: 121 DMQEKVTGGRNGYGAKLCNIFSNEFTVETADSKQKKKFKLTWTNNMSTMGKAKITECKGD 180

Query: 203 RGTRITFRPDP-KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             T++TF+PD  K   D    D   L+K        +       +  +   + +    + 
Sbjct: 181 DYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCGTAVKLNGTRIPIKSFKKYMEM 240

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
                   +    T   +++ I +E          +     E      + + +  S+ N+
Sbjct: 241 YTKAIKAERGEDPTSASDKNDIITE----------SPDRRWEIGFTVSDGSFQQVSFVNS 290

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
           I T  GGTH + +   +   +   A   +NK   ++ +  +       ++  I  P F  
Sbjct: 291 IATTSGGTHVNYISDQICNKLAD-ALKKKNKTGATLKAAQIKNHIFLFVNSQIVNPAFTS 349

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK +L +  +Q   +  + D F   +++  +        ++  +E++  +  ++    +
Sbjct: 350 QTKEQLTTRASQFGSKCVVSDDFLKKVMKTRVMDD-----ILHFAEKKADQILKKTDGNR 404

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILN 498
            +                  H   L + EGDSA G A   R         V PLRGK+LN
Sbjct: 405 RSRMNNPKLTDANKAGTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLN 464

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLT 557
           V  A  ++I  N +I ++   +G + + +Y +   LRY  ++IMTD D DG+HI  LL+ 
Sbjct: 465 VRDASVDQISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLIN 524

Query: 558 FFYQEMYDLIEQ-KHLFLISPPLFRITQGT-----KSVYAHDEEHKQKILEEFKKHGKGK 611
           +       L++    L     P+ ++ +G       +         ++  E        K
Sbjct: 525 YLQVAFPTLLKIPGFLIEFITPIVKVWKGNPKNPTHTKSFFTLPEYEEWKEAHA--HDKK 582

Query: 612 IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERF 671
            +   +KGLG       +    D ++       +       +  + + +K    KADER 
Sbjct: 583 WQKKYYKGLGTSSTEDAQIYFQDLDRHLKQFHTLQD--KEAELIELAFSK---KKADERK 637

Query: 672 KFIQE--RASFID 682
           +++++    +++D
Sbjct: 638 EWLRQFKPGTYLD 650


>gi|269799044|gb|ACZ43800.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 487

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 194/498 (38%), Positives = 300/498 (60%), Gaps = 17/498 (3%)

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             I V++  +G ++V D+GRGIPV+ H +    S  E+ILT LHAGGKFD+++Y++SGGL
Sbjct: 1   TDIVVTIHDDGSVSVSDDGRGIPVDIHEE-EGVSAAEVILTVLHAGGKFDDNSYKVSGGL 59

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS++L +T+ R   I +Q +  G+P  P+ +   V +  GT + F P  +
Sbjct: 60  HGVGVSVVNALSEKLELTIFRHGKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFWPSHE 118

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
            F +   F    L K  +  ++L+  V      ++E        + + F + GG+K ++ 
Sbjct: 119 TFTNTL-FHYDILAKRLRELSFLNSGVSIKLIDERED------GKSDHFVYEGGIKAFVD 171

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               N++ I+ + F    E++     TVE A+ W +     I  + N I   +GGTH +G
Sbjct: 172 YLNVNKTPINKDAFHFSVERED--GITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAG 229

Query: 334 LRVALTRGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
            R ALTR +  Y E     +  ++ +   DD       ++SV + +P+F+ QTK KLVS 
Sbjct: 230 FRGALTRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSS 289

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRL 449
           + +  VE A+ +    YL++NP EA+ ++  +I+ S  R   RK      RK A+    L
Sbjct: 290 EVKSAVEQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKARDMTRRKGALDLAGL 349

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ +
Sbjct: 350 PGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLS 409

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q++  L+ A+GC   R +Y  +  RY ++IIMTDADVDG+HI +LLLTFF+++M +LIE
Sbjct: 410 SQEVATLITAMGCGIGRDEYNPDKTRYHQIIIMTDADVDGSHIRTLLLTFFFRQMPELIE 469

Query: 569 QKHLFLISPPLFRITQGT 586
           + ++++  PPL+++ +G 
Sbjct: 470 RGYIYIAQPPLYKMKKGK 487


>gi|327406038|ref|YP_004346876.1| DNA topoisomerase type IIA subunit B region 2 domain-containing
           protein [Fluviicola taffensis DSM 16823]
 gi|327321546|gb|AEA46038.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Fluviicola taffensis DSM 16823]
          Length = 634

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 197/666 (29%), Positives = 306/666 (45%), Gaps = 75/666 (11%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-----KALHHLFSEVIDNAMDEVIAGYA 94
           A + Y   +IR L+  E +R+RPGMYIG   +       ++ L  E++DN++DE + G  
Sbjct: 2   AENQYTEDNIRSLDWKEHIRLRPGMYIGKLGDGASADDGIYILVKEIVDNSVDEFVMGNG 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             I++ +  +G ++V D GRGIP+           +E + + ++ GGK+D+  ++ S GL
Sbjct: 62  KRIDIKV-KDGKVSVRDYGRGIPLGK--------VIECV-SQINTGGKYDSKAFKKSVGL 111

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           +GVG   VNALSD   V   R+       FSRG     L    K     GT   F PD  
Sbjct: 112 NGVGTKAVNALSDYFMVYSVREGQKKQVVFSRGELTEDLP-LSKTDEVNGTYFEFIPDES 170

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     F    L+KM  +  YL+  +   ++ +K             +    GLK  L+
Sbjct: 171 IFKKF-AFKMPYLIKMFWNYCYLNRGLAIYFNGEK-------------YQSKDGLKDLLE 216

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333
             ++   L       G           +E A    +   E    + N   T +GGTH+S 
Sbjct: 217 DNMDGDPLYPIIHLEGD---------DIEVAFTHGKTYGEDYYSFVNGQHTTQGGTHQSA 267

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD-- 391
            R ++ + I+ + +           + D+  S V  ++V + EP F  QTKTKL S +  
Sbjct: 268 FRESIAKVIRDFYK-------KDYDASDIRQSIVAAIAVKVIEPVFESQTKTKLGSQEIE 320

Query: 392 -----AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
                 +  + + L+D  D+YL ++P  A  L + + +   ER      R++ R  A + 
Sbjct: 321 PDGKSMRAFINDFLKDKLDNYLHRHPDVADTLEKKIKQSERERKELSGIRKLARDRAKKA 380

Query: 447 LRLPGKLADCSQN-------IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
                KL DC  +           T LFI EGDSA GS  ++R+ + QAV  LRGK LN 
Sbjct: 381 SLHNKKLRDCRSHLTDLKDEKREMTTLFITEGDSASGSITKSRDVNTQAVFSLRGKPLNC 440

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
                + +  N++   +  AL          ++LRY  ++I TDADVDG HI  LLLTFF
Sbjct: 441 YGLTKKVVYENEEFNLIQAALDIE----EDMDNLRYNNIVIATDADVDGMHIRLLLLTFF 496

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
            Q   DL+++ H++++  PLFR+    K++Y + +E ++  + E  K+     EI+RFKG
Sbjct: 497 LQFFPDLVKRNHVYVLQTPLFRVRNKKKTIYCYSDEERRAAISELGKN----PEITRFKG 552

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679
           LGE+   + K    D     L  V + KD          ++  MG    ER  FI E   
Sbjct: 553 LGEISPDEFKHFIGD--DIRLEPVLLTKD----ASIDSILSYFMGKNTPERQDFIIENLR 606

Query: 680 FIDDVG 685
            + D  
Sbjct: 607 VVKDDD 612


>gi|25006385|dbj|BAC24012.1| DNA topoisomerase II [Trichophyton violaceum]
          Length = 1094

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 137/673 (20%), Positives = 260/673 (38%), Gaps = 64/673 (9%)

Query: 50  RILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDNAM 86
           + +  LE +  RP  YIG  +                          L+ +F E++ NA 
Sbjct: 2   QKITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAA 61

Query: 87  DEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144
           D        + I V+LD   G ++V +NGRGIPVE H K       E+I   L     ++
Sbjct: 62  DNKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKK-EQIYIPELIFGHLLTSSNYN 120

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK--FSRGIPLSPLEKKEKVRNK 202
           +   +++GG +G G  + N  S+E  V  A        K  ++  +      K  + +  
Sbjct: 121 DMQEKVTGGRNGYGAKLCNIFSNEFTVETADSKQKKKFKLTWTNNMSTMGKAKITECKGD 180

Query: 203 RGTRITFRPDP-KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             T++TF+PD  K   D    D   L+K        +       +  +   + +    + 
Sbjct: 181 DYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCGTAVKLNGTRIPIKSFKKYMEM 240

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
                   +    T   +++ I +E          +     E      + + +  S+ N+
Sbjct: 241 YTKAIKAERGEDTTSASDKNDIITE----------SPDRRWEIGFTVSDGSFQQVSFVNS 290

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
           I T  GGTH + +   +   +   A   +NK   ++ +  +       ++  I  P F  
Sbjct: 291 IATTSGGTHVNYISDQICNKLAD-ALKKKNKTGATLKATQIKNHIFLFVNSQIVNPAFTS 349

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK +L +  +Q   +  + D F   +++  +        ++  +E++  +  ++    +
Sbjct: 350 QTKEQLTTRPSQFGSKCVVSDDFLKKVMKTRVMDD-----ILHFAEKKADQILKKTDGNR 404

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILN 498
            +                  H   L + EGDSA G A   R         V PLRGK+LN
Sbjct: 405 RSRMNNPKLTDANKAGTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLN 464

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLT 557
           V  A  ++I  N +I ++   +G + + +Y +   LRY  ++IMTD D DG+HI  LL+ 
Sbjct: 465 VRDASVDQISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLIN 524

Query: 558 FFYQEMYDLIEQ-KHLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKGK 611
           +       L++    L     P+ ++ +G     T +         ++  E        K
Sbjct: 525 YLQVAFPTLLKIPGFLIEFITPIVKVWKGDPKNPTHTKSFFTLPEYEEWKEAHA--HDKK 582

Query: 612 IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERF 671
            +   +KGLG       +    D ++       +       +  + + +K    KADER 
Sbjct: 583 WQKKYYKGLGTSSTEDAQIYFQDLDRHLKQFHTLQD--KEAELIELAFSK---KKADERK 637

Query: 672 KFIQE--RASFID 682
           +++++    +++D
Sbjct: 638 EWLRQFKPGTYLD 650


>gi|115448107|ref|NP_001047833.1| Os02g0699700 [Oryza sativa Japonica Group]
 gi|113537364|dbj|BAF09747.1| Os02g0699700 [Oryza sativa Japonica Group]
          Length = 956

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 144/682 (21%), Positives = 267/682 (39%), Gaps = 68/682 (9%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTD---------------------EKALHH 76
           ++  + Y          LE + +RP  YIG  +                        L+ 
Sbjct: 26  KTIEEMYQKK-----TQLEHILLRPDTYIGSVEKHTAQLWVYEDGAMVSRSVTYVPGLYK 80

Query: 77  LFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           +F E++ NA D        + + V +D + G ++V +NG GIPVE H +       E+I 
Sbjct: 81  IFDEILVNAADNKQRDPSMDSLRVEIDADEGRISVYNNGDGIPVEIHQE-EGVYVPEMIF 139

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA--RQNTIFSQKFSRGIPLSP 192
             L     +D++  + +GG +G G  + N  S E  +  A  R+   + Q FS  +    
Sbjct: 140 GHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFVIETADGRRQKKYKQVFSENMGKKS 199

Query: 193 LEKKEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
             +  K +  +  TR+TF+PD   F      +    L   +         KT        
Sbjct: 200 EPQITKCKQGENWTRVTFKPDLAKFNMTHLENDVVALMRKRVVDMAGTLGKTV------- 252

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
             +    +     F   +K Y+++  ++R  ++      +           E  ++  E 
Sbjct: 253 KVELDHQKVPVHSFSDYVKLYIKSASKDRDDVNELPSISQKVND-----RWEVCVSLSEG 307

Query: 312 NPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILS 371
             +  S+ N I T +GGTH   +   +   +     + +  +   + + ++       ++
Sbjct: 308 QFQQVSFVNRIATIKGGTHVDYVTNQIATHVMN--IVNKRNKNAHMKAHNVKSHLWVFVN 365

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
             I  P F  QTK  L +  A    +  L D F   +      ++ ++  ++  +E +L 
Sbjct: 366 ALIDNPAFDSQTKETLTTRQASFGSKCELSDDFLKKV-----GSSAIVLNLLSWAEFKLS 420

Query: 432 RRKQREVNRKTAIRKLRLPGKLADCS-QNIAHGTELFIVEGDSAGGSAKQARN---RSNQ 487
           +  Q+    K +        + A+ +    ++   L + EGDSA   A    +   R   
Sbjct: 421 KELQKTDGSKRSRLTGIPKLEDANGAGGKDSNNCTLILTEGDSAKALAMAGISVVGRDYY 480

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADV 546
            V PLRGK+LNV  A  ++I  N +I ++ Q LG +   QY     LRY  ++IMTD D 
Sbjct: 481 GVFPLRGKLLNVREASHKQIMENAEIQNIKQILGLQHGKQYDSTKGLRYGHLMIMTDQDH 540

Query: 547 DGAHIASLLLTFFYQEMYDLIEQK-HLFLISPPLFRITQ---GTKSVYAHDEEHKQKILE 602
           DG+HI  LL+ F +     LI+    L     P+ + T        +  +     ++  E
Sbjct: 541 DGSHIKGLLINFIHSFWPSLIKIPSFLVEFITPIIKATNKRDKKIVLPFYSMPEYEQWKE 600

Query: 603 EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKL 662
               +      I  +KGLG   +S+ ++   D  K     V   K+     D + + +K 
Sbjct: 601 SLGGNA-SGWSIKYYKGLGTSTSSEGRQYFQDIAKHKKDFV--WKNDQDDNDIELAFSK- 656

Query: 663 MGTKADERFKFIQ--ERASFID 682
              +  +R +++   +  + +D
Sbjct: 657 --KRITDRKEWLTNFQSGTHLD 676


>gi|324500590|gb|ADY40273.1| DNA topoisomerase 2 [Ascaris suum]
          Length = 1560

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 138/694 (19%), Positives = 252/694 (36%), Gaps = 71/694 (10%)

Query: 28  EIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD----------------- 70
           +     A    S    Y   S      LE + +RP  YIG  +                 
Sbjct: 12  DEEKENANKRISIERIYQKKS-----QLEHILLRPDTYIGSVEYTERAPMWVYDAELERI 66

Query: 71  -------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGNG-FLTVVDNGRGIPVENH 121
                     L+ +F E++ NA D        N+I+V++D     +TV +NG+GIPV  H
Sbjct: 67  VQRDITYVPGLYKIFDEILVNAADNKQRDPKMNVIKVTIDKENCEITVFNNGKGIPVVLH 126

Query: 122 PKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDEL--HVTVARQNTI 179
            K       E+I  TL     +D++  +++GG +G G  + N  S       +       
Sbjct: 127 -KTEKVFVPELIFGTLLTSSNYDDTERKVTGGRNGYGAKLCNVFSTRFTIETSSKEYGKS 185

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYL 237
           F Q +   +      +  K + +  T++TFRPD       +      A + +     A  
Sbjct: 186 FKQTWVNNMTKEREPEIGKSKGEDFTKVTFRPDLAKFRMTELDDDIVALMSRRAFDIAGS 245

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  VK   +  +   +              G K Y++  ++       E +    E+   
Sbjct: 246 TRGVKVFLNHKQLPVQ--------------GFKQYVEQYVKYNVNAQGEPYGFIYEQ--- 288

Query: 298 HRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA-IS 356
                E A+   E   +  S+ N+I T +GG H   +   +T  +    +    K   I+
Sbjct: 289 VNDRWEVALTVSERGFQQVSFANSIATTKGGRHVDYIVDQVTAKLIDIIKKKVGKSGGIN 348

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           +    +       ++  I  P F  Q+K  +         +  L D    ++        
Sbjct: 349 VKPFQVRNHMWVFVNALIENPTFDSQSKETMTLQAKSFGSKCELSD---KFIQSTMKCGI 405

Query: 417 KLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
                   R +++    K+    + + ++ +       D     +    L + EGDSA  
Sbjct: 406 VEAVMAWVRFKQQESLDKKCSSKKTSKLKGVPKLEDANDAGTKNSSHCTLILTEGDSAKS 465

Query: 477 SAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED- 532
            A        R    V PLRGK+LNV     ++I  N +I  L++ +G + R +Y  +D 
Sbjct: 466 LAVSGLGVVGRDRYGVFPLRGKMLNVREGNHKQIMENVEINALLKIIGLQYRLKYENDDD 525

Query: 533 ---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV 589
              LRY KV++M D D DG+HI  L++ F +     LI +  +     P+ + T+G +  
Sbjct: 526 MKTLRYGKVMVMADQDQDGSHIKGLVINFIHFNWPALIRRNFVEEFITPIVKATKGKEEF 585

Query: 590 YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDL 649
                    +              I  +KGLG   + + KE   D  +   +R       
Sbjct: 586 SFFSLPEYAEWRN--NTENWKSYRIKYYKGLGTSTSKEAKEYFTDMARHR-IRFRYGGQD 642

Query: 650 NSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
           + +     + +K    + ++R  ++    +   +
Sbjct: 643 DDM-SLDMAFSK---KRIEDRKTWLTSWMAERKN 672


>gi|299755855|ref|XP_001828929.2| DNA topoisomerase II [Coprinopsis cinerea okayama7#130]
 gi|298411411|gb|EAU92936.2| DNA topoisomerase II [Coprinopsis cinerea okayama7#130]
          Length = 1557

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 155/718 (21%), Positives = 279/718 (38%), Gaps = 82/718 (11%)

Query: 3   DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRP 62
           D   D  S +      S+ + ++  + P                     L  LE +  RP
Sbjct: 63  DSDEDEDSGMDTDEPTSTARRQEEPDEP---------------------LTQLEHILKRP 101

Query: 63  GMYIGGTDE-----------------------KALHHLFSEVIDNAMDEVIAGY-ANLIE 98
             YIG  +                             +  E++ NA D  I     + ++
Sbjct: 102 DSYIGSIETITTPMWTYDSETKRMVHREVKYVPGFFKIVDEILVNAADNKINDPSMDTLK 161

Query: 99  VSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           V++D   G ++V +NGRGIP+E H K       E+I   L     +D+   +++GG +G 
Sbjct: 162 VTIDVEEGTISVYNNGRGIPIEIHSK-EKMYIPEMIFGHLLTSTNYDDDEKKLTGGRNGY 220

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG---TRITFRPDPK 214
           G  + N  S E  V  A +NT    K +    +S   K +  +N RG   TRITFRPD K
Sbjct: 221 GAKLANIYSLEFTVETADKNTSQKYKQTWTDNMSKCGKAKITKNTRGEEYTRITFRPDLK 280

Query: 215 IFGDK--AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            FG         + L +     A     VK   + ++    K      E +         
Sbjct: 281 RFGMNSIDEDTVSLLKRRVFDMAGTVKDVKVFLNDERLKI-KNFKQYVEMYVSSVQEAAA 339

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHES 332
            ++    +   +              R  + + ++  E   +  S+ N+I T +GGTH +
Sbjct: 340 EKSGGAAQPKQTVIHEQIS------DRWEIAYTLS-TEGTFQHVSFANSIATSKGGTHVN 392

Query: 333 GLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
            +   +++ +     +++  +  ++    +       +   I  P F  QTK  L    +
Sbjct: 393 YIADQISKAL--VTSISKKNKGATVKPAQIRNHMWLFVKSLIVNPTFDSQTKELLTLPSS 450

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPG 451
           +   +  + D F   + +     + +++ V+  ++ +  ++ +R    +++ +  L    
Sbjct: 451 KFGSKPTISDEFIKKVAK-----SGIVDNVLNWAKFKADQQMKRADGTKRSRLLGLAKLS 505

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIR 508
              +     A    L + EGDSA   A        R N  V PLRGK+LNV  A  ++I 
Sbjct: 506 DANNAGTRHAQDCTLILTEGDSAKALAIAGLGVVGRDNFGVFPLRGKLLNVREARHDQIM 565

Query: 509 NNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
            N++I ++ + +G +    Y     LRY +++IMTD D DG+HI  L++ F       L+
Sbjct: 566 KNEEIQNIKKIMGLQHNKDYTNTSSLRYGRLMIMTDQDHDGSHIKGLIINFLDHFYPSLL 625

Query: 568 EQK-HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           +    L     P+ R+ +G K          ++ LEE       K E   +KGLG     
Sbjct: 626 KIPDFLVEFVTPIVRVKKGNKVKDFFTIPEYEQWLEETPDA--RKWESKYYKGLGTSEDK 683

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE--RASFID 682
             +E      K  +            +    + +K    KADER +++++    +F+D
Sbjct: 684 DAREYFSKMEKHMIPFA--PTQEGDRELIDLAFSK---KKADERKEWLRQFKPGTFLD 736


>gi|281208664|gb|EFA82840.1| DNA topoisomerase II [Polysphondylium pallidum PN500]
          Length = 1524

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 151/727 (20%), Positives = 270/727 (37%), Gaps = 82/727 (11%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           + DDS  +           S       +   +     +S  + Y     + +E L+ + +
Sbjct: 98  LEDDSFVVPDDDDDDDDDESNNNNSRKQPTTNITKNVKSVDETY-----KRMELLDQILL 152

Query: 61  RPGMYIGGTD---------------------EKALHHLFSEVIDNAMDEVIA------GY 93
           RP  YIG T+                        L+ +F E++ NA D +          
Sbjct: 153 RPDTYIGSTEKQEEELWIWENERMVRRKISYVPGLYKIFDEILVNAADNIQRPLQEGQKK 212

Query: 94  ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
              I+V +D     + V ++G G+PVE H K       E+I   L     +D+S   ++G
Sbjct: 213 MKQIKVEIDPEHNRIMVWNDGPGVPVEMHKK-EQMYVPEMIFGHLLTSSNYDDSEKRLAG 271

Query: 153 GLHGVGISVVNALSDELHVTVARQ--NTIFSQKFSRGIPLSPLEKKEKVRNKR-GTRITF 209
           G +G G  + NA S E  V  A      +F Q F   +      +          T+ITF
Sbjct: 272 GRNGFGAKLANAFSTEFLVECADSGRRKLFKQTFKANLKNREKPEITTYSKATDYTQITF 331

Query: 210 RPDPKIF---GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
            PD   F         + A L K     A  +  +K   + +    + +    +  F   
Sbjct: 332 YPDLSKFGMLSMLDDDNVALLTKRVYDIAGCNPSLKVTLNGEDLNIKSFQSYIQLYFKSL 391

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDE 326
                                      ++ + R  +  A++  E      S+ N+I T +
Sbjct: 392 EKAPEIY-------------------YERVSERWEIAIALS-HEGQFNQVSFVNSICTPK 431

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           GGTH +     +   I K A   ++K    I    +       ++  I  P F  QTK  
Sbjct: 432 GGTHVTHALNDVLAEIGK-AVQKKHKSKAEIKPAFIKNHLFVFVNSLIENPAFDSQTKEN 490

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L +       +    + F   +V++    + +++ +I  ++ +      R     T    
Sbjct: 491 LSTKITSFGSQCHPSEKFLKKIVES---KSGIVDQIISYAKHKEEMAMLRNTTATTKKGS 547

Query: 447 LRLPGKLADCSQNIAHGTE---LFIVEGDSAGGSAKQARNR---SNQAVLPLRGKILNVA 500
                KL D +      +E   L + EGDSA   A    +     +    PLRGK+LNV 
Sbjct: 548 RLNIPKLDDANLAGTSHSEDCTLILTEGDSAKTLAVSGISVVGWDHYGCFPLRGKLLNVR 607

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFF 559
            + +  +  N++I++++  +G +   QY +   LRY  ++IMTD D DG+HI  LLL F 
Sbjct: 608 ESDARTMMTNEEIVNIINIMGLQHGKQYEDVKSLRYGHLMIMTDQDHDGSHIKGLLLNFI 667

Query: 560 YQEMYDLIE-QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           +     L+  +  L     P+ + T+G K++  +         E    +     EI  +K
Sbjct: 668 HHFWPSLLRIEGFLVEFVTPIIKATKGNKTIAFYTIPEYLAWRE--ANNNGKGYEIKYYK 725

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER- 677
           GLG     + KE           +++   D  +      + NK    +A++R  ++ +  
Sbjct: 726 GLGTSTEEEAKEYFSQLVNH---KIDFEYDNGADDAIDKAFNK---KRANDRKTWMDQYT 779

Query: 678 -ASFIDD 683
             +++D 
Sbjct: 780 PGAYLDQ 786


>gi|41052970|dbj|BAD07880.1| putative DNA topoisomerase II [Oryza sativa Japonica Group]
          Length = 1525

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 144/682 (21%), Positives = 267/682 (39%), Gaps = 68/682 (9%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTD---------------------EKALHH 76
           ++  + Y          LE + +RP  YIG  +                        L+ 
Sbjct: 26  KTIEEMYQKK-----TQLEHILLRPDTYIGSVEKHTAQLWVYEDGAMVSRSVTYVPGLYK 80

Query: 77  LFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           +F E++ NA D        + + V +D + G ++V +NG GIPVE H +       E+I 
Sbjct: 81  IFDEILVNAADNKQRDPSMDSLRVEIDADEGRISVYNNGDGIPVEIHQE-EGVYVPEMIF 139

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA--RQNTIFSQKFSRGIPLSP 192
             L     +D++  + +GG +G G  + N  S E  +  A  R+   + Q FS  +    
Sbjct: 140 GHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFVIETADGRRQKKYKQVFSENMGKKS 199

Query: 193 LEKKEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
             +  K +  +  TR+TF+PD   F      +    L   +         KT        
Sbjct: 200 EPQITKCKQGENWTRVTFKPDLAKFNMTHLENDVVALMRKRVVDMAGTLGKTV------- 252

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
             +    +     F   +K Y+++  ++R  ++      +           E  ++  E 
Sbjct: 253 KVELDHQKVPVHSFSDYVKLYIKSASKDRDDVNELPSISQKVND-----RWEVCVSLSEG 307

Query: 312 NPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILS 371
             +  S+ N I T +GGTH   +   +   +     + +  +   + + ++       ++
Sbjct: 308 QFQQVSFVNRIATIKGGTHVDYVTNQIATHVMN--IVNKRNKNAHMKAHNVKSHLWVFVN 365

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
             I  P F  QTK  L +  A    +  L D F   +      ++ ++  ++  +E +L 
Sbjct: 366 ALIDNPAFDSQTKETLTTRQASFGSKCELSDDFLKKV-----GSSAIVLNLLSWAEFKLS 420

Query: 432 RRKQREVNRKTAIRKLRLPGKLADCS-QNIAHGTELFIVEGDSAGGSAKQARN---RSNQ 487
           +  Q+    K +        + A+ +    ++   L + EGDSA   A    +   R   
Sbjct: 421 KELQKTDGSKRSRLTGIPKLEDANGAGGKDSNNCTLILTEGDSAKALAMAGISVVGRDYY 480

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADV 546
            V PLRGK+LNV  A  ++I  N +I ++ Q LG +   QY     LRY  ++IMTD D 
Sbjct: 481 GVFPLRGKLLNVREASHKQIMENAEIQNIKQILGLQHGKQYDSTKGLRYGHLMIMTDQDH 540

Query: 547 DGAHIASLLLTFFYQEMYDLIEQK-HLFLISPPLFRITQ---GTKSVYAHDEEHKQKILE 602
           DG+HI  LL+ F +     LI+    L     P+ + T        +  +     ++  E
Sbjct: 541 DGSHIKGLLINFIHSFWPSLIKIPSFLVEFITPIIKATNKRDKKIVLPFYSMPEYEQWKE 600

Query: 603 EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKL 662
               +      I  +KGLG   +S+ ++   D  K     V   K+     D + + +K 
Sbjct: 601 SLGGNA-SGWSIKYYKGLGTSTSSEGRQYFQDIAKHKKDFV--WKNDQDDNDIELAFSK- 656

Query: 663 MGTKADERFKFIQ--ERASFID 682
              +  +R +++   +  + +D
Sbjct: 657 --KRITDRKEWLTNFQSGTHLD 676


>gi|325187394|emb|CCA21933.1| predicted protein putative [Albugo laibachii Nc14]
 gi|325190307|emb|CCA24783.1| topoisomerase putative [Albugo laibachii Nc14]
          Length = 1499

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 147/712 (20%), Positives = 266/712 (37%), Gaps = 78/712 (10%)

Query: 12  LPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSI-RILEGLEPVRMRPGMYIGGTD 70
                  S E   +S E  D+    +++AS       I +    L+ + +RP  Y+G  D
Sbjct: 38  SNNNKDSSEETAAESDESEDTDRIQSKNASQKQTIEQIYQKKTQLQHILLRPDTYVGSID 97

Query: 71  E-----------------------KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-G 105
                                     L+ +F E+I NA D        N + V++D   G
Sbjct: 98  PVTQNMWIYDEEASKMHLKKITFVPGLYKIFDEIIVNACDNKQRDASMNTLRVTIDPTAG 157

Query: 106 FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNAL 165
            ++V +NG+GIPV  H +       E+I   L  G  FD+   + +GG +G G  + N  
Sbjct: 158 EISVWNNGKGIPVVQHKEHE-VYVPELIFGHLLTGSNFDDKKKKTTGGRNGYGAKLANIF 216

Query: 166 SDELHVTVARQN--TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA--G 221
           S +  V  A +N    + Q FS  +             +  T ITFRPD K F       
Sbjct: 217 STKFIVETADKNVKKRYKQVFSDNMSQKESPAITSWNKQDFTCITFRPDLKRFKMDRLDD 276

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
              +   K     A ++ +    +  +++I  K        +      +  +  K   R 
Sbjct: 277 DIVSLFKKRVFDIAGVTDKSLQVYLNEEKITCKSFPDYISLYTGESAKEDVIFDKPTER- 335

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
                                +      ++  +  S+ N I T  GG H + +   +   
Sbjct: 336 --------------------WQVGFGPSDDGFQQISFVNGICTTRGGQHVTYIADQVVNK 375

Query: 342 IKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
           +   A + +  +  ++  + +       +S  I  P F  QTK  L +  +     ++L 
Sbjct: 376 L--VAAVKKRNKGEAVKPNYIKNMMTIYVSALIDNPAFDSQTKETLTTRPSSFGSTHSLS 433

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ--- 458
           D F   + +     + ++E V+  ++ +     QR+  +     KL    KL D +    
Sbjct: 434 DKFLKQIEK-----SGIVERVVSFAKFKQTAELQRKGAKGGNRSKLTGITKLDDANYAGT 488

Query: 459 NIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
                  L + EGDSA        +   R    V PL+GK+LNV  A   +I  N++I +
Sbjct: 489 AEGRKCTLILTEGDSAKSLTIGGLSVVGRDYYGVFPLKGKLLNVREASHSQILKNEEIQN 548

Query: 516 LVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE-QKHLF 573
           +V+ LG +    Y     LRY  ++IM D D DG+HI  L++ F +     L++ +  + 
Sbjct: 549 VVKILGLKYGQVYESTKSLRYGHLMIMADQDHDGSHIKGLVINFIHHFWPSLLQVEGFMH 608

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
               P+ +  +G+K    +     +        +      I  +KGLG     + KE   
Sbjct: 609 EFITPIVKCAKGSKKEVFYTMPEYEAW--RLATNNGQGWRIKYYKGLGTSTTEEAKEYFS 666

Query: 634 DANKRTLLRVEIN-KDLNSLKDTQDSINKLMGTKADERFKFIQ--ERASFID 682
           D       +++ + K          + +K    + +ER  +++     + +D
Sbjct: 667 DLATH---QIDFSYKGEEDGDSIDMAFSK---KRVEERKNWLRGYTPGTHVD 712


>gi|294675109|ref|YP_003575725.1| type II topoisomerase family protein [Prevotella ruminicola 23]
 gi|294472315|gb|ADE81704.1| type II topoisomerase family protein [Prevotella ruminicola 23]
          Length = 649

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 191/684 (27%), Positives = 302/684 (44%), Gaps = 99/684 (14%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           NYD  +I+ L GLE +R+RPGMYIG      + E  ++ L  EV DN++DE      + I
Sbjct: 14  NYDEGNIQTLTGLEHIRLRPGMYIGRLGDGSSAEDGIYVLLKEVFDNSIDEFKMKAGDRI 73

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           EV+++ N  ++V D GRGIP     +          ++ L+  GKFD+  ++ S GL+GV
Sbjct: 74  EVNVEDNLRISVRDYGRGIPQGKLIES---------VSILNTSGKFDSKAFKKSIGLNGV 124

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+  VNALS    V   R   +    F  G  +S     E  +++ GT I F PD   F 
Sbjct: 125 GVKAVNALSSHFEVHSYRDGKVRKAVFECGKLISD--VTEPSQDENGTYIYFEPDATKFI 182

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    +  M ++  YL+  +   ++  +                  GL+  L+ ++
Sbjct: 183 NY-QFHDEIVENMLRNYTYLNIGLTIMYNGRRI-------------LSRHGLEDLLKDRM 228

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            + +L       G+          +E A     +   E  S+ N   T +GGTH+S  + 
Sbjct: 229 TSDALYPIVHLQGE---------DIEIAFTHANQYGEEYYSFVNGQHTTQGGTHQSAFKE 279

Query: 337 ALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR-- 394
            + R IK++               D+    V  +++ + EP F  QTK KL SL      
Sbjct: 280 HIARTIKEFYG--------KYEYGDIRTGIVAAIAINVEEPLFESQTKIKLGSLTMAPDG 331

Query: 395 ------TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR 448
                  V + ++   D+YL  +   A  L   + E   +R       ++ R+ A +   
Sbjct: 332 GVSVNKYVGDFIKTEVDNYLHIHQDVAEVLENKIKESERDRKAMAGVTKLARERAKKANL 391

Query: 449 LPGKLADCSQNIAH-------GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
              KL DC  + +         + +FI EGDSA GS  ++R+ + QAV  LRGK LN   
Sbjct: 392 HNRKLRDCRIHFSDVKNDRKEESCIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNCFG 451

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
              + +  N++   L  AL            LRY KVI+ TDADVDG HI  L++TFF Q
Sbjct: 452 LTKKVVYENEEFNLLQAALDIEESLDT----LRYNKVIVATDADVDGMHIRLLIITFFLQ 507

Query: 562 EMYDLIEQKHLFLISPPLFRIT------QGTKSV----------------YAHDEEHKQK 599
              +LI++ H++++  PLFR+       +  K++                Y + +E +QK
Sbjct: 508 FFPELIKKGHVYVLQTPLFRVRNRRTKIKNKKTIAEADAKSDKKSDFITRYCYSDEERQK 567

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
            +EE         EI+RFKGLGE+   +     +  + R L +V ++K     K     +
Sbjct: 568 AIEELGPD----PEITRFKGLGEISPDEFAG-FIGPDMR-LEQVTLHKTDQVAK----LL 617

Query: 660 NKLMGTKADERFKFIQERASFIDD 683
              MG    ER  FI +     +D
Sbjct: 618 EYYMGKNTMERQNFIIDNLVVEED 641


>gi|38453797|dbj|BAD02199.1| DNA topoisomerase II [Arthroderma racemosum]
          Length = 1089

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 142/672 (21%), Positives = 260/672 (38%), Gaps = 66/672 (9%)

Query: 51  ILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDNAMD 87
            +  LE +  RP  YIG  +                          L+ +F E++ NA D
Sbjct: 1   KITQLEHILKRPDTYIGSVERTEMHMWVYNSTTELMEYRDVSFVPGLYKIFDEILVNAAD 60

Query: 88  EVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
                   N I V+LD   G ++V +NGRGIPVE H K       E+I   L     +++
Sbjct: 61  NKQNDPNMNEIRVTLDKEAGEISVWNNGRGIPVEIHSK-EKIYIPELIFGHLLTSSNYND 119

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK--FSRGIPLSPLEKKEKVRNKR 203
              +++GG +G G  + N  S+E  V  A        K  ++  +      K    +   
Sbjct: 120 LQEKVTGGRNGYGAKLCNIFSNEFTVETADSKKNKKFKLTWTNNMSTMGKAKITDCKGDD 179

Query: 204 GTRITFRPDP-KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            T++TF+PD  K   D    D   L+K        +       +  K   + +       
Sbjct: 180 YTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCGTAVKLNGTKIPIKTFKK----- 234

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
            Y     K     + E+ +   ++I T   ++        E      + + +  S+ N+I
Sbjct: 235 -YMEMYTKAIKTERGEDPTSDKNDIITESPDR------RWEIGFTVSDGSFQQVSFVNSI 287

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T  GGTH + +   +   +   A   +NK   ++ +  +       ++  I  P F  Q
Sbjct: 288 ATTSGGTHVNYISDQICNKLAD-ALKKKNKTGATLKAAQIKNHIFLFVNAQIVNPAFTSQ 346

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK +L +  +Q   +  + D F   +++  +        ++  +E++  +  ++    + 
Sbjct: 347 TKEQLTTRSSQFGSKCVVSDDFMKKVMKTRVMED-----ILHFAEKKADQILKKTDGNRR 401

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNV 499
           +                  H   L + EGDSA G A   R         V PLRGK+LNV
Sbjct: 402 SRMNNPKLTDANKAGTKEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNV 461

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTF 558
             A  ++I  N +I ++   +G + + +Y +   LRY  ++IMTD D DG+HI  LL+ +
Sbjct: 462 RDASVDQISKNSEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINY 521

Query: 559 FYQEMYDLIEQ-KHLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKGKI 612
                  L++    L     P+ ++ +G     T S         ++  E        K 
Sbjct: 522 LQVAFPTLLKIPGFLIEFITPIVKVWKGDPKNPTHSKSFFTLPEYEEWKEAHTND--KKW 579

Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
           +   +KGLG       +    D ++       +       +  + + +K    KADER +
Sbjct: 580 QKKYYKGLGTSSTEDAQIYFQDLDRHLKQFHTLQD--KEAELIELAFSK---KKADERKE 634

Query: 673 FIQE--RASFID 682
           ++++    +++D
Sbjct: 635 WLRQFKPGTYLD 646


>gi|203287508|ref|YP_002222523.1| DNA topoisomerase IV [Borrelia recurrentis A1]
 gi|201084728|gb|ACH94302.1| DNA topoisomerase IV [Borrelia recurrentis A1]
          Length = 598

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 187/650 (28%), Positives = 305/650 (46%), Gaps = 67/650 (10%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYA 94
             + YD S I  L  LE +R+R GMYIG        +  ++ L  E++DN++DE I GY 
Sbjct: 2   KKNCYDESKIVTLSSLEHIRLRSGMYIGRLGDGSNIDDGIYILIKEIVDNSIDEFIMGYG 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             I V    +  +TV D GRGIP+           +E + + ++ G K++++ ++ S GL
Sbjct: 62  KEI-VIKREDNVITVRDYGRGIPLGK--------VVESV-SVINTGAKYNDNVFQFSVGL 111

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           +GVG   VNALS +  +   R+   F   FS+G  ++  E   K   + GT I F  D +
Sbjct: 112 NGVGTKAVNALSSKFLIRSIREGNFFEAVFSKGNLINTTE--GKSDEQNGTYIEFLADTE 169

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IFG    +    L +       L+  ++  ++              + F    GL  +++
Sbjct: 170 IFGKY-KYSEDFLQRRFFHYVCLNKGLEINYND-------------QIFRSDNGLLNFIR 215

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
            +++   L+   ++            T+E+A +          S+ N   T +GGTH++G
Sbjct: 216 AEIKYEDLLYDFVYYSS--------KTLEFAFSHTNNYGETYFSFVNGQYTSDGGTHQTG 267

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            R    R I  +      K+  S    D+    V  LS+ I++P F  QTK KL +++ +
Sbjct: 268 FREGFARAINDF-----LKKTYSST--DIREGLVATLSIKIKDPIFESQTKNKLGNIETR 320

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
             +   ++      L ++   A  +   VI+    R      R+  ++ A +      KL
Sbjct: 321 GNIAKEVQRLILEILYKDKTLAKTIESKVIDNERLRKELSSVRKEAKERAKKISFKIPKL 380

Query: 454 ADCSQN------IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            DC  +       +  T +F+ EGDSA GS    R+   QA+  LRGK  N+      +I
Sbjct: 381 KDCKFHFNEKSVHSDATMIFLTEGDSATGSMVSCRDVYTQAIFSLRGKPQNMFEKNRSEI 440

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N+++ +++ ALG         E+LRY KV+I TDAD DG HI +LLLTFF     DL+
Sbjct: 441 YKNEELYNMMVALGIE----ESIENLRYNKVVIATDADFDGFHIRNLLLTFFLTYFEDLV 496

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
              H+ ++  PLFR+   + ++Y + EE KQK L + K       E++RFKGLGE+  ++
Sbjct: 497 LNGHMHILETPLFRVRNKSATIYCYSEEDKQKALLKLKN-----PEVTRFKGLGEISPNE 551

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
            K   +D     L +V    DL ++K+ ++ +   MG    ER  FI E 
Sbjct: 552 FKG-FIDVANIKLTKV----DLVNIKEIKEQLGFYMGPNTPERRNFIMEN 596


>gi|25006387|dbj|BAC24013.1| DNA topoisomerase II [Arthroderma otae]
          Length = 1087

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 142/675 (21%), Positives = 263/675 (38%), Gaps = 66/675 (9%)

Query: 48  SIRILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDN 84
             + +  LE +  RP  YIG  +                          L+ +F E++ N
Sbjct: 1   QYQKITQLEHILKRPDTYIGSVERTEKQMWVYNSTTELMEYREVSYVPGLYKIFDEILVN 60

Query: 85  AMDEVIAGY-ANLIEVSLDGNG-FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142
           A D        N I V+LD  G  ++V +NGRGIPVE H K       E+I   L     
Sbjct: 61  AADNKQNDPNMNEIRVTLDKEGGEISVWNNGRGIPVEVHSK-EKIYIPELIFGHLLTSSN 119

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVA--RQNTIFSQKFSRGIPLSPLEKKEKVR 200
           +++   +++GG +G G  + N  S+E  +  A  R    F   ++  +      K  + +
Sbjct: 120 YNDQQEKVTGGRNGYGAKLCNIFSNEFTIETADSRTKKKFKLTWTNNMSAMGKPKITECK 179

Query: 201 NKRGTRITFRPDP-KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
               T++TF+PD  K   +    D   L+K        +       +  K   + +    
Sbjct: 180 GDDYTKVTFKPDFAKFGMEGMDDDFEALVKRRVYDMAGTCGTAVKLNGTKIPVKSFKK-- 237

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYC 319
               Y     K     + E+ +   ++I T   ++        E      + + +  S+ 
Sbjct: 238 ----YMEMYTKAIKTERGEDPTSDKNDIITESPDR------RWEIGFTVSDGSFQQVSFV 287

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEF 379
           N+I T  GGTH + +   +   +   A   +NK   ++ +  +       ++  I  P F
Sbjct: 288 NSIATTSGGTHVNYISDQICNKLAD-ALKKKNKTGATLKAAQIKNHIFLFVNCQIVNPAF 346

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN 439
             QTK +L +  +Q   +  + D F   +++  +        ++  +E++  +  ++   
Sbjct: 347 TSQTKEQLTTRSSQFGSKCIVSDEFLKKVMKTRVMDD-----ILHFAEKKADQILKKTDG 401

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKI 496
            + +                  H   L + EGDSA G A   R         V PLRGK+
Sbjct: 402 NRRSRMNNPKLTDANKAGTKEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKL 461

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLL 555
           LNV  A  ++I  N +I ++   +G + + +Y +   LRY  ++IMTD D DG+HI  LL
Sbjct: 462 LNVRDASVDQISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLL 521

Query: 556 LTFFYQEMYDLIEQ-KHLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGK 609
           + +       L++    L     P+ ++ +G     T S         ++  E       
Sbjct: 522 INYLQVAFPTLLKIPGFLIEFITPIVKVWKGDPKNPTHSKSFFTLPEYEEWKETHA--HD 579

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669
            K +   +KGLG       +    D +K       +       +  + + +K    KADE
Sbjct: 580 KKWQKKYYKGLGTSSTEDAQIYFQDLDKHLKQFHTLQD--KEAELIELAFSK---KKADE 634

Query: 670 RFKFIQE--RASFID 682
           R +++++    +++D
Sbjct: 635 RKEWLRQFKPGTYLD 649


>gi|25006389|dbj|BAC24014.1| DNA topoisomerase II [Arthroderma gypseum]
          Length = 1091

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 140/675 (20%), Positives = 264/675 (39%), Gaps = 66/675 (9%)

Query: 48  SIRILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDN 84
             + +  LE +  RP  YIG  +                          L+ +F E++ N
Sbjct: 1   QYQKITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVN 60

Query: 85  AMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142
           A D        + I V+LD   G ++V +NGRGIPVE H K  +    E+I   L     
Sbjct: 61  AADNKQNDPSMSEIRVTLDKEAGEISVWNNGRGIPVEIHKK-EHIYIPELIFGHLLTSSN 119

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEKVR 200
           +++   +++GG +G G  + N  S+E  V  A       F   +++ +      K  + +
Sbjct: 120 YNDMQEKVTGGRNGYGAKLCNIFSNEFTVETADSSNKKKFKLTWTKNMSTMGKAKITESK 179

Query: 201 NKRGTRITFRPDP-KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
               T++TF+PD  K   D    D   L+K        +       +  +   + +    
Sbjct: 180 GDDYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCGTTVKLNGTRIPVKSFKK-- 237

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYC 319
               Y     K     + E+ +   ++I T   ++        E      + + +  S+ 
Sbjct: 238 ----YMEMYTKAIKTERGEDPTSDKNDIITESPDR------RWEIGFTVSDGSFQQVSFV 287

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEF 379
           N+I T  GGTH + +   +   +   A   +NK   ++ +  +       ++  I  P F
Sbjct: 288 NSIATTSGGTHVNYISDQICNKLAD-ALKKKNKTGATLKAAQIKNHIFLFVNSQIVNPAF 346

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN 439
             QTK +L +  +Q   +  + D F   +++  +        ++  +E++  +  ++   
Sbjct: 347 TSQTKEQLTTRSSQFGSKCIVSDDFLKKVMKTRVMDD-----ILHFAEKKADQILKKTDG 401

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKI 496
            + +                  H   L + EGDSA G A   R         V PLRGK+
Sbjct: 402 NRRSRMNNPKLTDANKAGTKEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKL 461

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLL 555
           LNV  A  ++I  N +I ++   +G + + +Y +   LRY  ++IMTD D DG+HI  LL
Sbjct: 462 LNVRDASVDQISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLL 521

Query: 556 LTFFYQEMYDLIEQ-KHLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGK 609
           + +       L++    L     P+ ++ +G     T S         ++  E       
Sbjct: 522 INYLQVAFPTLLKIPGFLIEFITPIVKVWKGDPKNPTHSKSFFTLPEYEEWKEAHA--HD 579

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669
            K +   +KGLG       +    D ++       +       +  + + +K    KADE
Sbjct: 580 KKWQKKYYKGLGTSSTEDAQVYFQDLDRHLKQFHTLQD--KEAELIELAFSK---KKADE 634

Query: 670 RFKFIQE--RASFID 682
           R +++++    +++D
Sbjct: 635 RKEWLRQFKPGTYLD 649


>gi|38453817|dbj|BAD02209.1| DNA topoisomerase II [Trichophyton tonsurans]
          Length = 1089

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 136/672 (20%), Positives = 258/672 (38%), Gaps = 64/672 (9%)

Query: 51  ILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDNAMD 87
            +  LE +  RP  YIG  +                          L+ +F E++ NA D
Sbjct: 1   KITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAAD 60

Query: 88  EVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
                   + I V+LD   G ++V +NGRGIPVE H K       E+I   L     +++
Sbjct: 61  NKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKK-EQIYIPELIFGHLLTSSNYND 119

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK--FSRGIPLSPLEKKEKVRNKR 203
              +++GG +G G  + N  S+E  V  A        K  ++  +      K  + +   
Sbjct: 120 MQEKVTGGRNGYGAKLCNIFSNEFTVETADSKQKKKFKLTWTNNMSTMGKAKITECKGDD 179

Query: 204 GTRITFRPDP-KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            T++TF+PD  K   D    D   L+K        +       +  +   + +    +  
Sbjct: 180 YTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCGTSVKLNGTRIPIKSFKKYMEMY 239

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
                  +    T   +++ I +E          +     E      + + +  S+ N+I
Sbjct: 240 TKAIKAERGEDSTSASDKNDIITE----------SPDRRWEIGFTVSDGSFQQVSFVNSI 289

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T  GGTH + +   +   +   A   +NK   ++ +  +       ++  I  P F  Q
Sbjct: 290 ATTSGGTHVNYISDQICNKLAD-ALKKKNKAGATLKAAQIKNHIFLFVNSQIVNPAFTSQ 348

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK +L +  +Q   +  + D F   +++  +        ++  +E++  +  ++    + 
Sbjct: 349 TKEQLTTRASQFGSKCVVSDDFLKKVMKTRVMDD-----ILHFAEKKADQILKKTDGNRR 403

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNV 499
           +                  H   L + EGDSA G A   R         V PLRGK+LNV
Sbjct: 404 SRMNNPKLTDANKAGTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNV 463

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTF 558
             A  ++I  N +I ++   +G + + +Y +   LRY  ++IMTD D DG+HI  LL+ +
Sbjct: 464 RDASVDQISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINY 523

Query: 559 FYQEMYDLIEQ-KHLFLISPPLFRITQGT-----KSVYAHDEEHKQKILEEFKKHGKGKI 612
                  L++    L     P+ ++ +G       +         ++  E        K 
Sbjct: 524 LQVAFPTLLKIPGFLIEFITPIVKVWKGNPKNPTHTKSFFTLPEYEEWKEAHA--HDKKW 581

Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
           +   +KGLG       +    D ++       +       +  + + +K    KADER +
Sbjct: 582 QKKYYKGLGTSSTEDAQIYFQDLDRHLKQFHTLQD--KEAELIELAFSK---KKADERKE 636

Query: 673 FIQE--RASFID 682
           ++++    +++D
Sbjct: 637 WLRQFKPGTYLD 648


>gi|328871183|gb|EGG19554.1| DNA topoisomerase II [Dictyostelium fasciculatum]
          Length = 1574

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 157/725 (21%), Positives = 273/725 (37%), Gaps = 87/725 (12%)

Query: 3   DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRP 62
           D  IDL S    + +   +K   S           ++  + Y    +     L+ + +RP
Sbjct: 112 DSDIDLDSASDSEVEEQPKKKIVSSS------GKEKTVEEIYQKKDL-----LDQILLRP 160

Query: 63  GMYIGGTD---------------------EKALHHLFSEVIDNAMDEVIAG---YANLIE 98
             YIG  +                        L+ +F E++ NA D +          I+
Sbjct: 161 DTYIGSIEKQEEELWIWENDRMKKRKTVFVPGLYKIFDEILVNAADNLQRKDGQPMKSIK 220

Query: 99  VSLDG-NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           V ++  +  ++V ++G+G+PVE H K       E++   L     +D+S   ++GG +G 
Sbjct: 221 VEINANDNRISVWNDGKGVPVEMH-KGEKMQVPELVFGHLLTSSNYDDSEERLAGGRNGF 279

Query: 158 GISVVNALSDELHVTVARQ--NTIFSQKFSRGIPLSPLEKKEKVRNKR-GTRITFRPDPK 214
           G  + NA S +  V  A      +F Q F++ +        E        T+ITF PD  
Sbjct: 280 GAKLTNAFSQKFLVECADSARKKLFKQTFTKNMKQRDEPVIESYTKATDYTKITFHPDLA 339

Query: 215 IFGDKAGFDAARLL---KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
            FG     D   L    K     A  +  +K   +                         
Sbjct: 340 RFGMTRLDDDDNLELLTKRVYDIAGCNQSLKVYLNGK--------------LIGFNSFTD 385

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHE 331
           Y+ T  ++       ++              E A+A  +  P+  S+ N+I T++GGTH 
Sbjct: 386 YIDTYFKDDENAPVVVY-------ERVNPRWEIAVACSDGTPQQVSFVNSICTNKGGTHV 438

Query: 332 SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           +     +T  I       +NK  I +    +       ++  I  P F  QTK    S  
Sbjct: 439 TYALTKITEAIIA-QVAKKNKGGIEMKPSFVKNHLFIFVNCLIVNPAFDSQTKETCSSKV 497

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP- 450
           +         D    +L       T +++ +I  ++ +     ++   + T   +L +  
Sbjct: 498 STYGSTCIPSD---KFLKSVCETKTGIVDQIISWAKHKETVDLKKTTPKATKKGRLNIEK 554

Query: 451 -GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR---SNQAVLPLRGKILNVASAGSEK 506
             +        +    L + EGDSA   A    +     +  V PLRGK++NV       
Sbjct: 555 LDEANFAGTKKSEDCTLILTEGDSAKTLATAGISVVGWDHYGVFPLRGKVINVREVSHRS 614

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           I  N++I ++ + +G +    Y     LRY  ++IMTD D DG+HI  L+L F +     
Sbjct: 615 ILANEEIRNIFEIMGFQHNVNYDNISTLRYGHLMIMTDQDHDGSHIKGLILNFIHHFWPS 674

Query: 566 LIE-QKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
           L++    L     P+ +  +G  K +  +      K  E    +G    EI  +KGLG  
Sbjct: 675 LLKIDGFLMEFITPIIKAFKGKNKPISFYTIPEYLKWKET---NGGKGYEIKYYKGLGTS 731

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ--ERASFI 681
            A + KE   D  +  L   +   D N+      + NK    +AD+R K++   E  +++
Sbjct: 732 KAEEGKEYFADIERHKL---DFQWDDNADDSIDMAFNK---KRADDRKKWLNDFEPGTYL 785

Query: 682 DDVGT 686
           D  G 
Sbjct: 786 DQYGA 790


>gi|281356734|ref|ZP_06243225.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Victivallis vadensis ATCC BAA-548]
 gi|281316861|gb|EFB00884.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Victivallis vadensis ATCC BAA-548]
          Length = 609

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 184/657 (28%), Positives = 314/657 (47%), Gaps = 72/657 (10%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIA 91
            +  S  YD S+I+ L  LE +R+RPGMYIG        +  ++ L  E+IDN++DE I 
Sbjct: 2   PEENSVAYDGSAIKTLSALEHIRLRPGMYIGRMGDGSHPDDGIYILIKEIIDNSIDEFIM 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+   +E+S+     +T+ D GRGIP++          +E + + ++ GGK+++  ++ S
Sbjct: 62  GHGKRVELSI-EGNEVTIRDYGRGIPLDK--------VVECV-SVMNTGGKYNDDVFKFS 111

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
            GL+GVG   VNALS+   V   R        F RG+     E   +   K GT + F P
Sbjct: 112 IGLNGVGTKAVNALSEFFLVRAVRDGRFHEATFERGVLTGENE--GECGEKNGTFVRFIP 169

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           DP +F +   F    + K     AYL+  +   ++  +             +    GL+ 
Sbjct: 170 DPTLFPNY-AFKLEYIEKRLWMYAYLNSGLALYFNGQR-------------YLSANGLQD 215

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTH 330
            L+++     L +   +  KT         +E+A+   +   E   S+ N   T++GGTH
Sbjct: 216 LLESETGEERLYNVIAYRSKT---------IEFALTHSDNYGETSFSFVNGQYTNDGGTH 266

Query: 331 ESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
            S  +  + +GI +++            +D++    +G +++ I++P F  QTK KL + 
Sbjct: 267 LSAFKEGVLKGINEFSGKNYK-------ADEIRDGMIGAVAIKIKDPVFESQTKNKLGNT 319

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
           D +  +  A+RD    YL +N   +  LL+ V    +   + ++ ++  R+T  +     
Sbjct: 320 DVRGPIVAAVRDAIVDYLHKNKDVSEILLDKVARNEQMHRQIQEVKKKGRETQQKTRLRI 379

Query: 451 GKLADCSQN---------IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            KL DC  +             T +F+ EGDSA GS +  R+ ++QA+  LRGK +N   
Sbjct: 380 PKLKDCKFHIGDKWPRNLEKSDTMIFLTEGDSAAGSLEVCRDVNSQAIFALRGKPMNCYG 439

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
              +KI +N+++  L+QALG         E+LRY+KV+I TDADVDG HI +LL+T+F  
Sbjct: 440 EKFDKIYSNEELTFLMQALGIE----DDIENLRYDKVVIATDADVDGLHIRNLLITYFLC 495

Query: 562 EMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
               L+   HL+++  PLFR+ +   K VY + +  +             K EI+RFKGL
Sbjct: 496 FFEQLVLSGHLYVLETPLFRVQKPKEKPVYCYSDAERDA----AAAKLGKKAEITRFKGL 551

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           GE+   +  +         L  V +     ++++  + +   MG    +R ++I   
Sbjct: 552 GEISPKEFGQFIG--EDIKLQPVTLE----NMRNVPELLGFFMGNNTPKRREYIMNN 602


>gi|38453813|dbj|BAD02207.1| DNA topoisomerase II [Arthroderma simii]
 gi|38453815|dbj|BAD02208.1| DNA topoisomerase II [Arthroderma simii]
          Length = 1089

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 137/672 (20%), Positives = 258/672 (38%), Gaps = 64/672 (9%)

Query: 51  ILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDNAMD 87
            +  LE +  RP  YIG  +                          L+ +F E++ NA D
Sbjct: 1   KITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAAD 60

Query: 88  EVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
                   + I V+LD   G ++V +NGRGIPVE H K       E+I   L     +++
Sbjct: 61  NKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKK-EQIYIPELIFGHLLTSSNYND 119

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK--FSRGIPLSPLEKKEKVRNKR 203
              +++GG +G G  + N  S+E  V  A        K  ++  +      K  + +   
Sbjct: 120 MQEKVTGGRNGYGAKLCNIFSNEFTVETADSKQKKKFKLTWTNNMSTMGKAKITECKGDD 179

Query: 204 GTRITFRPDP-KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            T++TF+PD  K   D    D   L+K        +       +  +   + +    +  
Sbjct: 180 YTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCGTAVKLNGTRIPIKSFKKYMEMY 239

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
                  +    T   +++ I +E          +     E      + + +  S+ N+I
Sbjct: 240 TKAIKAERGEDPTSASDKNDIITE----------SPDRRWEIGFTVSDGSFQQVSFVNSI 289

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T  GGTH + +   +   +   A   +NK   ++ +  +       ++  I  P F  Q
Sbjct: 290 ATTSGGTHVNYISDQICNKLAD-ALKKKNKTGATLKAAQIKNHIFLFVNCQIVNPAFTSQ 348

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK +L +  +Q   +  + D F   +++  +        ++  +E++  +  ++    + 
Sbjct: 349 TKEQLTTRASQFGSKCVVSDDFLKKVMKTRVMDD-----ILHFAEKKADQILKKTDGNRR 403

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNV 499
           +                  H   L + EGDSA G A   R         V PLRGK+LNV
Sbjct: 404 SRMNNPKLTDANKAGTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNV 463

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTF 558
             A  ++I  N +I ++   +G + + +Y +   LRY  ++IMTD D DG+HI  LL+ +
Sbjct: 464 RDASVDQISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINY 523

Query: 559 FYQEMYDLIEQ-KHLFLISPPLFRITQGT-----KSVYAHDEEHKQKILEEFKKHGKGKI 612
                  L++    L     P+ ++ +G       S         ++  E        K 
Sbjct: 524 LQVAFPTLLKIPGFLIEFITPIVKVWKGNPKNPTHSKSFFTLPEYEEWKEAHA--HDKKW 581

Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
           +   +KGLG       +    D ++       +       +  + + +K    KADER +
Sbjct: 582 QKKYYKGLGTSSTEDAQIYFQDLDRHLKQFHTLQD--KEAELIELAFSK---KKADERKE 636

Query: 673 FIQE--RASFID 682
           ++++    +++D
Sbjct: 637 WLRQFKPGTYLD 648


>gi|10121857|gb|AAG13401.1|AF285155_1 topoisomerase II alpha-2 [Gallus gallus]
          Length = 1586

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 131/716 (18%), Positives = 242/716 (33%), Gaps = 72/716 (10%)

Query: 14  PQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-- 71
           P          +  +     A    S    Y          LE + +RP  YIG  +   
Sbjct: 7   PAPLRPLHDNPRLPKAD--GAQKRLSVERIYQKK-----TQLEHILLRPDTYIGSVETVT 59

Query: 72  --------------------KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTV 109
                                 L+ +F E++ NA D        + I+V++D  N  ++V
Sbjct: 60  QQMWVFDEDVGLNCRDVTFVPGLYKIFDEILVNAADNKQRDKSMSCIKVTIDPENNTISV 119

Query: 110 VDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDEL 169
            +NG+GIPV  H K        +I   L     +D+   +++GG +G G  + N  S + 
Sbjct: 120 WNNGKGIPVVEH-KVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKF 178

Query: 170 HVT--VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAA 225
            V         +F Q ++  +  +     +    +  T +TF+PD   F          A
Sbjct: 179 TVETACREYKKLFKQTWTDNMGKAGEMTLKHFDGEDYTCVTFQPDLSKFKMTILDKDIVA 238

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
            + +     A  +  VK   +  +   + +                     +        
Sbjct: 239 LMSRRAYDIAGSTKDVKVFLNGKRLPVKGFRSYVDLYLKDKVDETGNALKVIHEEVNSRW 298

Query: 286 EIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILT------------------DEG 327
           E+    +EK       V             +                            G
Sbjct: 299 EVCLTLSEKGFQQVSFVNSIATTKVILSSCSHIHFIFFLLALCFVSLETPRALWSHFPLG 358

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           G H   +   +   +       +NK  + +    +       ++  I  P F  QTK  +
Sbjct: 359 GRHVDYVADQIVTKLID-VVKKKNKNGVGVKPFQVKNHMWIFVNSLIENPTFDSQTKENM 417

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL 447
                       L + F    V        +L WV  +++   +  K+    + T I+ +
Sbjct: 418 TLQAKSFGSTCKLSEKFIKGAVG-CGIVESILNWVKFKAQ--TQLNKKCSAVKHTKIKGV 474

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGS 504
                  D     +    L + EGDSA   A        R    V PLRGK+LNV  A  
Sbjct: 475 PKLDDANDAGSKNSIDCTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKMLNVREASH 534

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFY 560
           ++I  N +I ++++ +G + +  Y + +    LRY K++IMTD D DG+HI  LL+ F +
Sbjct: 535 KQIMENAEINNIIKIVGLQYKKNYEDRESLKSLRYGKIMIMTDQDQDGSHIKGLLINFIH 594

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
                L+    L     P+ ++++  + +  +     ++     + +     +I  +KGL
Sbjct: 595 HNWPSLLRHNFLEEFITPIIKVSKNKEEIPFYSIPEFEEWKSSTQNYN--SWKIKYYKGL 652

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           G   + + KE   D  +  +                 + +K    K +ER +++  
Sbjct: 653 GTSTSKEAKEYFADMARHRIGF--KYSGPEDDAAITLAFSK---KKVEERKEWLTN 703


>gi|317499299|ref|ZP_07957572.1| hypothetical protein HMPREF0996_02556 [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893468|gb|EFV15677.1| hypothetical protein HMPREF0996_02556 [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 411

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 164/417 (39%), Positives = 242/417 (58%), Gaps = 11/417 (2%)

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           +    + +  +  ++   + EK G +   VE A    +       S+ N I+T EGGTH 
Sbjct: 1   MTYLNKGKEALYPDVIYCEGEKDGVY---VEVAFQHNDSYNETSLSFVNNIITPEGGTHL 57

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           SG ++ALT     YA       ++  ++  +D+      ++S+ I EP+F GQTK KL +
Sbjct: 58  SGFKMALTSTFNDYARKNNLLKEKEDNLSGEDIREGLTSVISIKIGEPQFEGQTKQKLGN 117

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448
            +A+  V + L +   ++L QNP  A  + E  +     R   RK R+   RKTA+  + 
Sbjct: 118 SEARGAVNSILSEQLKYFLEQNPQVAKIICEKAVLAQRARDAARKARDLTRRKTALDGMS 177

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS       E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV  A  +K+ 
Sbjct: 178 LPGKLADCSDKNPENCEIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARLDKVL 237

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            N++I  ++ A G      +  E LRY K+IIMTDADVDGAHIA+LLLTF Y+ M +LI+
Sbjct: 238 VNKEIQAMITAFGTGIHEDFDIEKLRYHKIIIMTDADVDGAHIATLLLTFIYRFMPELIK 297

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           + +++L  PPL+R+ +  K  YA+ +E    IL+E  +    K  I R+KGLGEM A QL
Sbjct: 298 KGYVYLAQPPLYRVEKNKKFWYAYSDEELNNILQEIGRDNNNK--IQRYKGLGEMDAEQL 355

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +T MD  KR LLRV +++D  S  +   +   LMG + + R +FI+  A ++ ++ 
Sbjct: 356 WDTTMDPEKRILLRVNLDED--SASEIDLTFTTLMGDQVEPRREFIEANAKYVQNLD 410


>gi|38453809|dbj|BAD02205.1| DNA topoisomerase II [Arthroderma vanbreuseghemii]
          Length = 1089

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 136/672 (20%), Positives = 258/672 (38%), Gaps = 64/672 (9%)

Query: 51  ILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDNAMD 87
            +  LE +  RP  YIG  +                          L+ +F E++ NA D
Sbjct: 1   KITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAAD 60

Query: 88  EVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
                   + I V+LD   G ++V +NGRGIPVE H K       E+I   L     +++
Sbjct: 61  NKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKK-EQIYIPELIFGHLLTSSNYND 119

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK--FSRGIPLSPLEKKEKVRNKR 203
              +++GG +G G  + N  S+E  V  A        K  ++  +      K  + +   
Sbjct: 120 MQEKVTGGRNGYGAKLCNIFSNEFTVETADSKQKKKFKLTWTNNMSTMGKAKITECKGDD 179

Query: 204 GTRITFRPDP-KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            T++TF+PD  K   D    D   L+K        +       +  +   + +    +  
Sbjct: 180 YTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCGTAVKLNGTRIPIKSFKKYMEMY 239

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
                  +    T   +++ I +E          +     E      + + +  S+ N+I
Sbjct: 240 TKAIKAERGEDPTSASDKNDIITE----------SPDRRWEIGFTVSDGSFQQVSFVNSI 289

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T  GGTH + +   +   +   A   +NK   ++ +  +       ++  I  P F  Q
Sbjct: 290 ATTSGGTHVNYISDQICNKLAD-ALKKKNKTGATLKAAQIKNHIFLFVNSQIVNPAFTSQ 348

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK +L +  +Q   +  + D F   +++  +        ++  +E++  +  ++    + 
Sbjct: 349 TKEQLTTRASQFGSKCVVSDDFLKKVMKTRVMDD-----ILHFAEKKADQILKKTDGNRR 403

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNV 499
           +                  H   L + EGDSA G A   R         V PLRGK+LNV
Sbjct: 404 SRMNNPKLTDANKAGTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNV 463

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTF 558
             A  ++I  N +I ++   +G + + +Y +   LRY  ++IMTD D DG+HI  LL+ +
Sbjct: 464 RDASVDQISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINY 523

Query: 559 FYQEMYDLIEQ-KHLFLISPPLFRITQGT-----KSVYAHDEEHKQKILEEFKKHGKGKI 612
                  L++    L     P+ ++ +G       +         ++  E        K 
Sbjct: 524 LQVAFPTLLKIPGFLIEFITPIVKVWKGNPKNPTHTKSFFTLPEYEEWKEAHA--HDKKW 581

Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
           +   +KGLG       +    D ++       +       +  + + +K    KADER +
Sbjct: 582 QKKYYKGLGTSSTEDAQIYFQDLDRHLKQFHTLQD--KEAELIELAFSK---KKADERKE 636

Query: 673 FIQE--RASFID 682
           ++++    +++D
Sbjct: 637 WLRQFKPGTYLD 648


>gi|328773079|gb|EGF83116.1| hypothetical protein BATDEDRAFT_18312 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 1218

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 153/691 (22%), Positives = 263/691 (38%), Gaps = 77/691 (11%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD---------------------E 71
           P    +S  + Y          LE + +RP  YIG T+                      
Sbjct: 78  PVKGGKSIEEIYQKK-----TQLEHILIRPDTYIGSTEFINTPLWVFDGERMVHRPISFV 132

Query: 72  KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKST 129
             L+ +F E+I NA D  +     + I++S+D     ++V +NGRGIP+E H K      
Sbjct: 133 PGLYKIFDEIIVNAADNKVRDPTMDTIKISIDREKNTISVYNNGRGIPIEIHAK-EQIYV 191

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA--RQNTIFSQKFSRG 187
            E+I   L     +D+   +++GG +G G  + N  S    V  A  R    F Q FS  
Sbjct: 192 PELIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTYFMVETADSRSGRKFKQVFSNN 251

Query: 188 I-PLSPLEKKEKVRNKRGTRITFRPDPKIFGD--KAGFDAARLLKMTQSKAYLSGRVKTC 244
           +   +     +  + +  T+ITF+PD + F          A L K     A     +K  
Sbjct: 252 MSSKTTPTITQNNKGEDFTQITFKPDLEKFKMTVIDDDFEALLKKRAYDLAGCVRGIKVF 311

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
            +  +   + +              K Y+   L+N +  +        EK        E 
Sbjct: 312 LNNTRIKIKDF--------------KDYVDLYLDNVNPETGLKPPIVYEK---LNDRWEI 354

Query: 305 AIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMI 364
           A    +      S+ N+I T +GGTH + +   +  G+       ++K+A+ +       
Sbjct: 355 AYTPSDGQFNQVSFANSICTSKGGTHVNTIADQIVTGLMD-QVKKKDKKAVPLKPHQAKS 413

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
                ++  +  P F  QTK  L    +    +  + + F   +       + +++ +++
Sbjct: 414 HIWIFVNCQVENPTFDSQTKETLTLRTSAFGSKTPISEEFMKKV-----FRSGIIDTIMK 468

Query: 425 RSEERLRRRKQREVNRKTAIRKLRLP--GKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
            ++ +  +  ++        R   +       +          L + EGDSA   A    
Sbjct: 469 FAKFKQDQLLKKTDGSGKKSRINGITKLDDANNAGTKNGGKCTLILTEGDSAKSLAVSGL 528

Query: 483 N---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKV 538
           +   R N  V PLRGK+LNV  A   +I  N +I  + Q LG +    Y +   LRY  +
Sbjct: 529 SVVGRDNFGVFPLRGKLLNVREATHAQITGNAEISAIKQILGLQHGKVYEDASTLRYGHL 588

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQG----TKSVYAHD 593
           +IMTD D DG+HI  L++ F       L+     L     P+ R T+G     + +    
Sbjct: 589 MIMTDQDHDGSHIKGLIINFLDHFWPSLLYIPGFLLEFITPIVRATKGKGHNKQEISFFT 648

Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
               ++  E     G        FKGLG    +  KE   D NK       ++    S +
Sbjct: 649 IPEFEQWKE--VNSGGRGWTTKYFKGLGTSTTADAKEYFSDMNKHLKPFCRLDD--ESRE 704

Query: 654 DTQDSINKLMGTKADERFKFI--QERASFID 682
               + NK    KAD R +++   +  +++D
Sbjct: 705 LIDMAFNK---KKADSRKEWLGRFQPGTYMD 732


>gi|38453811|dbj|BAD02206.1| DNA topoisomerase II [Trichophyton quinckeanum]
          Length = 1089

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 137/672 (20%), Positives = 259/672 (38%), Gaps = 64/672 (9%)

Query: 51  ILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDNAMD 87
            +  LE +  RP  YIG  +                          L+ +F E++ NA D
Sbjct: 1   KITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAAD 60

Query: 88  EVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
                   + I V+LD   G ++V +NGRGIPVE H K       E+I   L     +++
Sbjct: 61  NKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKK-EQIYIPELIFGHLLTSSNYND 119

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK--FSRGIPLSPLEKKEKVRNKR 203
              +++GG +G G  + N  S+E  V  A        K  ++  +      K  + +   
Sbjct: 120 MQEKVTGGRNGYGAKLCNIFSNEFTVETADSKQKKKFKLTWTNNMSTMGKAKITECKGDD 179

Query: 204 GTRITFRPDP-KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            T++TF+PD  K   D    D   L+K        +       +  +   + +    +  
Sbjct: 180 YTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCGTAVKLNGTRIPIKSFKKYMEMY 239

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
                  +    T   +++ I +E          +     E      + + +  S+ N+I
Sbjct: 240 TKAIKAERGEDPTSASDKNDIITE----------SPDRRWEIGFTVSDGSFQQVSFVNSI 289

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T  GGTH + +   +   +   A   +NK   ++ +  +       ++  I  P F  Q
Sbjct: 290 ATTSGGTHVNYISDQICNKLAD-ALKKKNKTGATLKAAQIKNHIFLFVNSQIVNPAFTSQ 348

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK +L +  +Q   +  + D F   +++  +        ++  +E++  +  ++    + 
Sbjct: 349 TKEQLTTRTSQFGSKCVVSDDFLKKVMKTRVMDD-----ILHFAEKKADQILKKTDGNRR 403

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNV 499
           +                  H   L + EGDSA G A   R         V PLRGK+LNV
Sbjct: 404 SRMNNPKLTDANKAGTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNV 463

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTF 558
             A  ++I  N +I ++   +G + + +Y +   LRY  ++IMTD D DG+HI  LL+ +
Sbjct: 464 RDASVDQISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINY 523

Query: 559 FYQEMYDLIEQ-KHLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKGKI 612
                  L++    L     P+ ++ +G     T +         ++  E        K 
Sbjct: 524 LQVAFPTLLKIPGFLIEFITPIVKVWKGSPKNPTHTKSFFTLPEYEEWKEAHA--HDKKW 581

Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
           +   +KGLG       +    D ++       +       +  + + +K    KADER +
Sbjct: 582 QKKYYKGLGTSSTEDAQIYFQDLDRHLKQFHTLQD--KEAELIELAFSK---KKADERKE 636

Query: 673 FIQE--RASFID 682
           ++++    +++D
Sbjct: 637 WLRQFKPGTYLD 648


>gi|330996821|ref|ZP_08320690.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paraprevotella xylaniphila YIT 11841]
 gi|329572264|gb|EGG53923.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paraprevotella xylaniphila YIT 11841]
          Length = 655

 Score =  379 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 188/690 (27%), Positives = 298/690 (43%), Gaps = 98/690 (14%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNA 85
           +            Y    IR L  +E +R RPGMYIG        E  ++ L  EVIDN+
Sbjct: 3   EEEKPNEAPILTEYTEDHIRHLSDMEHIRTRPGMYIGKLGDGSHAEDGIYVLLKEVIDNS 62

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE        IE++++ N  ++V D GRGIP+    +          ++ L+ GGK+D+
Sbjct: 63  IDEFKMNAGRRIEITVEDNLRVSVRDYGRGIPLGKLIE---------AVSMLNTGGKYDS 113

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             ++ S GL+GVG+  VNALS    V   R   +    F RGI  S  E  E   ++ GT
Sbjct: 114 KAFKKSVGLNGVGVKAVNALSSHFEVRSHRDGEMRRATFERGILTS--ESTEPTADENGT 171

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            I F PD  +F +   F    +  M ++  YL+  +   ++  +              + 
Sbjct: 172 FIYFEPDCALFKNY-TFRTEFIETMLRNYTYLNTGLTIMFNGRRI-------------HS 217

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
             GL   L   + N  L       G+          +E A     +   E  S+ N   T
Sbjct: 218 RNGLVDLLNDNMTNDGLYPIIHLKGE---------DIEIAFTHTGQYGEEYYSFVNGQHT 268

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
            +GGTH+S  +  +   IK ++         +    D+    V  ++V I EP F  QTK
Sbjct: 269 TQGGTHQSAFKKHIAETIKDFSG-------KNFDYGDIRNGLVAAIAVNIEEPLFESQTK 321

Query: 385 TKLVS--------LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
            KL S        +   + V + +++  D+YL +N   A  +++ + E  +ER       
Sbjct: 322 IKLGSLTTIPDGGISIDKFVGDFVKEQVDNYLHKNTDIADIIIQKITENEKERKAIAGVT 381

Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAH-------GTELFIVEGDSAGGSAKQARNRSNQAV 489
           ++ R+ A +      KL DC  ++          + +FI EGDSA GS  ++R+ + QAV
Sbjct: 382 KLARERAKKANLHNRKLRDCRIHLNDAKGDLKEDSSIFITEGDSASGSITKSRDVTTQAV 441

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549
             LRGK LN      + +  N++   L  AL          + LRY KVI+ TDADVDG 
Sbjct: 442 FSLRGKPLNCFGLTKKVVYENEEFNLLQAALNIEDGL----DGLRYNKVIVATDADVDGM 497

Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTK---------------------- 587
           HI  L++TFF Q   +LI++ H++++  PLFR+                           
Sbjct: 498 HIRLLMITFFLQFFPELIKKGHVYILQTPLFRVRNRKNKIGKQKLKELEEEAKAAKSDFI 557

Query: 588 SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINK 647
           + Y + +E +   +E          EI+RFKGLGE+   + K   +  + R L +V ++K
Sbjct: 558 TRYCYSDEERVAAIEALGPD----PEITRFKGLGEISPDEFKH-FIGPDIR-LEQVSLHK 611

Query: 648 DLNSLKDTQDSINKLMGTKADERFKFIQER 677
                   ++ +   MG    ER  FI   
Sbjct: 612 ----SDQVKELLEYYMGKNTMERQNFIINN 637


>gi|38453821|dbj|BAD02211.1| DNA topoisomerase II [Arthroderma benhamiae]
          Length = 1089

 Score =  379 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 138/672 (20%), Positives = 259/672 (38%), Gaps = 64/672 (9%)

Query: 51  ILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDNAMD 87
            +  LE +  RP  YIG  +                          L+ +F E++ NA D
Sbjct: 1   KITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAAD 60

Query: 88  EVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
                   + I V+LD   G ++V +NGRGIPVE H K       E+I   L     +++
Sbjct: 61  NKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKK-EQIYIPELIFGHLLTSSNYND 119

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK--FSRGIPLSPLEKKEKVRNKR 203
              +++GG +G G  + N  S+E  V  A        K  ++  +      K  + +   
Sbjct: 120 MQEKVTGGRNGYGAKLCNIFSNEFTVETADSKQKKKFKLTWTNNMSTMGKAKITECKGDD 179

Query: 204 GTRITFRPDP-KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            T++TF+PD  K   D    D   L+K        +       +  +   + +    +  
Sbjct: 180 YTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCGTAVKLNGTRTPIKSFKKYMEMY 239

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
                  +    T   +++ I +E          +     E      + + +  S+ N+I
Sbjct: 240 TKAIKAERGEDPTSASDKNDIITE----------SPDRRWEIGFTVSDGSFQQVSFVNSI 289

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T  GGTH + +   +   +   A   +NK   ++ +  +       ++  I  P F  Q
Sbjct: 290 ATTSGGTHVNYISDQICNKLAD-ALKKKNKTGATLKAAQIKNHIFLFVNSQIVNPAFTSQ 348

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK +L +  +Q   +  + D F   +++  +        ++  +E++  +  ++    + 
Sbjct: 349 TKEQLTTRPSQFGSKCVVSDDFLKKVMKTRVMDD-----ILHFAEKKADQILKKTDGNRR 403

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNV 499
           +                  H   L + EGDSA G A   R         V PLRGK+LNV
Sbjct: 404 SRMNNPKLTDANKAGTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNV 463

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTF 558
             A  ++I  N +I ++   +G + + +Y +   LRY  ++IMTD D DG+HI  LL+ +
Sbjct: 464 RDASVDQISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINY 523

Query: 559 FYQEMYDLIEQ-KHLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKGKI 612
                  L++    L     P+ ++ +G     T S         ++  E        K 
Sbjct: 524 LQVAFPTLLKIPGFLIEFITPIVKVWKGDPKNPTHSKSFFTIPEYEEWKEAHA--HDKKW 581

Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
           +   +KGLG       +    D ++       +       +  + + +K    KADER +
Sbjct: 582 QKKYYKGLGTSSTEDAQIYFQDLDRHLKQFHTLQD--KEAELIELAFSK---KKADERKE 636

Query: 673 FIQE--RASFID 682
           ++++    +++D
Sbjct: 637 WLRQFKPGTYLD 648


>gi|38453823|dbj|BAD02212.1| DNA topoisomerase II [Arthroderma benhamiae]
          Length = 1089

 Score =  379 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 139/672 (20%), Positives = 260/672 (38%), Gaps = 64/672 (9%)

Query: 51  ILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDNAMD 87
            +  LE +  RP  YIG  +                          L+ +F E++ NA D
Sbjct: 1   KITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAAD 60

Query: 88  EVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
                   + I V+LD   G ++V +NGRGIPVE H K       E+I   L     +++
Sbjct: 61  NKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKK-EQIYIPELIFGHLLTSSNYND 119

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK--FSRGIPLSPLEKKEKVRNKR 203
              +++GG +G G  + N  S+E  V  A        K  ++  +      K  + +   
Sbjct: 120 MQEKVTGGRNGYGAKLCNIFSNEFTVETADSKQKKKFKLTWTNNMSTMGKAKITECKGDD 179

Query: 204 GTRITFRPDP-KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            T++TF+PD  K   D    D   L+K        +       +  +   + +    +  
Sbjct: 180 YTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCGTAVKLNGTRIPIKSFKKYMEMY 239

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
                  +    T   +++ I +E          +     E      + + +  S+ N+I
Sbjct: 240 TKAIKAERGEDPTSASDKNDIITE----------SPDRRWEIGFTVSDGSFQQVSFVNSI 289

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T  GGTH + +   +   +   A   +NK   ++ +  +       ++  I  P F  Q
Sbjct: 290 ATTSGGTHVNYISDQICNKLAD-ALKKKNKTGATLKAAQIKNHIFLFVNSQIVNPAFTSQ 348

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK +L +  +Q   + A+ D F   +++  +        ++  +E++  +  ++    + 
Sbjct: 349 TKEQLTTRPSQFGSKCAVSDDFLKKVMKTRVMDD-----ILHFAEKKADQILKKTDGNRR 403

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNV 499
           +                  H   L + EGDSA G A   R         V PLRGK+LNV
Sbjct: 404 SRMNNPKLTDANKAGTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNV 463

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTF 558
             A  ++I  N +I ++   +G + + +Y +   LRY  ++IMTD D DG+HI  LL+ +
Sbjct: 464 RDASVDQISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINY 523

Query: 559 FYQEMYDLIEQ-KHLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKGKI 612
                  L++    L     P+ ++ +G     T S         ++  E        K 
Sbjct: 524 LQVAFPTLLKIPGFLIEFITPIVKVWKGDPKNPTHSKSFFTIPEYEEWKEAHA--HDKKW 581

Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
           +   +KGLG       +    D ++       +       +  + + +K    KADER +
Sbjct: 582 QKKYYKGLGTSSTEDAQIYFQDLDRHLKQFHTLQD--KEAELIELAFSK---KKADERKE 636

Query: 673 FIQE--RASFID 682
           ++++    +++D
Sbjct: 637 WLRQFKPGTYLD 648


>gi|29839795|ref|NP_828901.1| DNA topoisomerase IV subunit B [Chlamydophila caviae GPIC]
 gi|29834142|gb|AAP04779.1| topoisomerase, subunit B, putative [Chlamydophila caviae GPIC]
          Length = 602

 Score =  379 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 187/647 (28%), Positives = 299/647 (46%), Gaps = 64/647 (9%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTD-----EKALHHLFSEVIDNAMDEVIAGYANLI 97
            Y  +S+  L  LE +R+R GMYIG        E  ++ LF EV+DNA+DE I G+   I
Sbjct: 3   TYTEASVVSLASLEHIRLRAGMYIGRLGDGSQVEDGIYTLFKEVVDNAIDEFIMGHGKRI 62

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            +S      +TV D GRGIP+    +          ++ ++ G K+    +  S GL+GV
Sbjct: 63  SISTQAT-SVTVRDYGRGIPLGKMIE---------CVSKINTGAKYTQDVFHFSVGLNGV 112

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+  VNALS+   V   R+    +  F +GI  +   ++   ++  GT ITF PDP IF 
Sbjct: 113 GLKAVNALSETFTVRSVRKKKYHAATFCKGILQNS--RQGSTKDPDGTEITFSPDPTIFT 170

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           D   F+   L K  +   YL   ++   + +              F    GL+   + ++
Sbjct: 171 DF-SFNDEFLRKKIRRYTYLHPGLEILCNDE-------------VFVSQQGLQDLFKEEI 216

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRV 336
              +L     F             + +     E  N    S+ N   T +GGTH +  + 
Sbjct: 217 TEETLYPPIAF---------QNSELSFLFTHLETHNERYFSFVNGQETVDGGTHLAAFKE 267

Query: 337 ALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           A+ +GI +Y   T         S+D+    VG +++ I  P F  QTK KL +   +  +
Sbjct: 268 AIVKGINEYFGKT-------FTSNDIRDGLVGCIAIKIASPIFESQTKNKLGNTQIRSGI 320

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++      L +N   A  LL+ +    + R   +  ++  +    +      KL DC
Sbjct: 321 IKDVKSAIIQELKKNKSYADLLLDKIKLNEKTRKNIQFIKQDLKDKQKKLHYKIPKLRDC 380

Query: 457 SQNIAHGT------ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
             +    +       +F+ EG+SA  S   +RN   QAV  LRGK +NV S   EK+  N
Sbjct: 381 KFHYNERSLYGEASSIFVTEGESASASILSSRNPLTQAVFSLRGKPMNVFSLEEEKMYKN 440

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
            ++  L  ALG    +      LRY K+I+ TDADVDG HI +LL+TFF +    ++E  
Sbjct: 441 DELFYLASALGITKNNTQH---LRYNKIILATDADVDGMHIRNLLITFFLKTFLPIVENH 497

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           HLF++  PLF++     ++Y + ++ K + +++  K  +  +EI+RFKGLGE+   + K 
Sbjct: 498 HLFILETPLFKVRYKDTTLYCYSDQEKVQAIQKLGKK-EANLEITRFKGLGEISPKEFK- 555

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           T + A+ R L  V I     SL+  +  +   MG    ER +FI + 
Sbjct: 556 TFIGADMR-LTPVTI----GSLESLETLLQFYMGKNTKERKQFIMDN 597


>gi|38453805|dbj|BAD02203.1| DNA topoisomerase II [Arthroderma fulvum]
          Length = 1086

 Score =  379 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 140/672 (20%), Positives = 260/672 (38%), Gaps = 66/672 (9%)

Query: 51  ILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDNAMD 87
            +  LE +  RP  YIG  +                          L+ +F E++ NA D
Sbjct: 1   KITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAAD 60

Query: 88  EVIAG-YANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
                   + I V+LD   G ++V +NGRGIPVE H K  +    E+I   L     +++
Sbjct: 61  NKQNDSNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKK-EHIYIPELIFGHLLTSSNYND 119

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
              +++GG +G G  + N  S E  V  A       F   ++  +      K  + +   
Sbjct: 120 MQEKVTGGRNGYGAKLCNIFSTEFTVETADSSNKKKFKLTWTNNMSTMGKAKITESKGDD 179

Query: 204 GTRITFRPDP-KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            T++TF+PD  K   D    D   L+K        +       +  +   + +       
Sbjct: 180 YTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCGTTVKLNGTRIPIKTFKK----- 234

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
            Y     K     + E+ +   ++I T   ++        E      + + +  S+ N+I
Sbjct: 235 -YMEMYTKAIKTERGEDPTSDKNDIITESPDR------RWEIGFTVSDGSFQQVSFVNSI 287

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T  GGTH + +   +   +   A   +NK   ++    +       ++  I  P F  Q
Sbjct: 288 ATTSGGTHVNYISDQICNKLAD-ALKKKNKTGATLKPAQIKNHIFLFVNSQIVNPAFTSQ 346

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK +L +  +Q   +  + D F   +++  +        ++  +E++  +  ++    + 
Sbjct: 347 TKEQLTTRSSQFGSKCIVSDDFLKKVMKTRVMDD-----ILHFAEKKADQILKKTDGNRR 401

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNV 499
           +                  H   L + EGDSA G A   R         V PLRGK+LNV
Sbjct: 402 SRMNNPKLTDANKAGTKEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNV 461

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTF 558
             A  ++I  N +I ++   +G + + +Y +   LRY  ++IMTD D DG+HI  LL+ +
Sbjct: 462 RDASVDQISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINY 521

Query: 559 FYQEMYDLIEQ-KHLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKGKI 612
                  L++    L     P+ ++ +G     T S         ++  E        K 
Sbjct: 522 LQVAFPTLLKIPGFLIEFITPIVKVWKGDPKNPTHSKSFFTLPEYEEWKEAHA--HDKKW 579

Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
           +   +KGLG       +    D ++       +       +  + + +K    KADER +
Sbjct: 580 QKKYYKGLGTSSTEDAQVYFQDLDRHLKQFHTLQD--KEAELIELAFSK---KKADERKE 634

Query: 673 FIQE--RASFID 682
           ++++    +++D
Sbjct: 635 WLRQFKPGTYLD 646


>gi|38453801|dbj|BAD02201.1| DNA topoisomerase II [Arthroderma incurvatum]
          Length = 1086

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 140/672 (20%), Positives = 262/672 (38%), Gaps = 66/672 (9%)

Query: 51  ILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDNAMD 87
            +  LE +  RP  YIG  +                          L+ +F E++ NA D
Sbjct: 1   KITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAAD 60

Query: 88  EVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
                   + I V+LD   G ++V +NGRGIPVE H K  +    E+I   L     +++
Sbjct: 61  NKQNDPSMSEIRVTLDKEAGEISVWNNGRGIPVEIHKK-EHIYIPELIFGHLLTSSNYND 119

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
              +++GG +G G  + N  S+E  V  A       F   ++  +      K  + +   
Sbjct: 120 LQEKVTGGRNGYGAKLCNIFSNEFTVETADSSNKKKFRLTWTNNMSTMGKAKITECKGDD 179

Query: 204 GTRITFRPDP-KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            T++TF+PD  K   D    D   L+K        +       +  +   + +       
Sbjct: 180 YTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCGTTVKLNGTRIPVKSFKK----- 234

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
            Y     K     + E+ +   ++I T   ++        E      + + +  S+ N+I
Sbjct: 235 -YMEMYTKAIKTERGEDPTSDKNDIITESPDR------RWEIGFTVSDGSFQQVSFVNSI 287

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T  GGTH + +   +   +   A   +NK   ++ +  +       ++  I  P F  Q
Sbjct: 288 ATTSGGTHVNYISDQICNKLAD-ALKKKNKTGATLKAAQIKNHIFLFVNSQIVNPAFTSQ 346

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK +L +  +Q   +  + D F   +++  +        ++  +E++  +  ++    + 
Sbjct: 347 TKEQLTTRSSQFGSKCIVSDDFLKKVMKTRVMDD-----ILHFAEKKADQILKKTDGNRR 401

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNV 499
           +                  H   L + EGDSA G A   R         V PLRGK+LNV
Sbjct: 402 SRMNNPKLTDANKAGTKEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNV 461

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTF 558
             A  ++I  N +I ++   +G + + +Y +   LRY  ++IMTD D DG+HI  LL+ +
Sbjct: 462 RDASVDQISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINY 521

Query: 559 FYQEMYDLIEQ-KHLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKGKI 612
                  L++    L     P+ ++ +G     T S         ++  E        K 
Sbjct: 522 LQVAFPTLLKIPGFLIEFITPIVKVWKGDPKNPTHSKSFFTLPEYEEWKESHA--HDKKW 579

Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
           +   +KGLG       +    D ++       +       +  + + +K    KADER +
Sbjct: 580 QKKYYKGLGTSSTEDAQVYFQDLDRHLKQFHTLQD--KEAELIELAFSK---KKADERKE 634

Query: 673 FIQE--RASFID 682
           ++++    +++D
Sbjct: 635 WLRQFKPGTYLD 646


>gi|330837757|ref|YP_004412398.1| DNA topoisomerase IV subunit B [Spirochaeta coccoides DSM 17374]
 gi|329749660|gb|AEC03016.1| DNA topoisomerase IV subunit B [Spirochaeta coccoides DSM 17374]
          Length = 606

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 183/648 (28%), Positives = 303/648 (46%), Gaps = 68/648 (10%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDE-----KALHHLFSEVIDNAMDEVIAGYANLI 97
            YD S I+ L  LE +R+RPGMYIG   +       ++ L  E++DN++DE I G    +
Sbjct: 12  TYDESKIQTLSALEHIRLRPGMYIGRLGDGRHVDDGIYVLLKEIVDNSIDEFIMGNGTRV 71

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            VSL  +  + V D+GRGIP+           +E + + ++ G K+++  ++ S GL+GV
Sbjct: 72  SVSL-RDKTVMVRDHGRGIPLGK--------LVECV-SVINTGAKYNDEVFQFSVGLNGV 121

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G   VNALS    V   R        F RGI  S  EKK K     GT I F PD  IF 
Sbjct: 122 GTKAVNALSSHFVVRAFRAGIFAEAVFERGILKS--EKKGKADEADGTYIEFIPDHDIFS 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           D   F+   +++   + AYL+  +   ++                +    GL   L+ ++
Sbjct: 180 DYT-FNPDYIVERMWNYAYLNTGLTMEFNGK-------------SYRSAHGLLDLLEKEV 225

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337
            +  +     + GK       +    +            SY N   T++GGTH +  +  
Sbjct: 226 GDDEMYKVIHYRGK-------QMEFAFTHTPGSYGETYFSYVNGQHTNDGGTHVAAFKEG 278

Query: 338 LTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           L +GI  +      K+  S  + D+    +G ++V ++ P F  QTK KL + + +  + 
Sbjct: 279 LLKGINDHF-----KKNWS--AQDVREGLIGAIAVKLQNPLFESQTKNKLGNTEIRTWIV 331

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             +++  + +L++NP +A+++   +I+  + R    + ++  R  A +      KL DC 
Sbjct: 332 QEVKEAVESFLLRNPDDASRINTKIIQNEKLRKELNEVKKTARDAARKVSLNIPKLKDCK 391

Query: 458 QNIAH--------GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
            ++           + +F+ EGDSA G+  + R+   QAV  LRGK+ NV      +I  
Sbjct: 392 YHLNQGSHPEQGEQSMIFLTEGDSASGTITKVRDVRTQAVFSLRGKVPNVCGKKKTEIYK 451

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N ++ +++ ALG           LRY KVII TDAD DG HI  LL+T+F     DL+  
Sbjct: 452 NAELYNMMVALGIEND----ISGLRYGKVIIATDADNDGFHIRILLMTYFLTYFEDLVLS 507

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
             LF++  PLFR+    K++Y + E  + + + + +       E++RFKGLGE+  S+  
Sbjct: 508 GRLFILETPLFRVRNKQKTIYCYTEVSRDEAMAQLR-----GAEVTRFKGLGEIDPSEFG 562

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           +         L+ V I+    S+ +   ++   MG    ER  FI E 
Sbjct: 563 QFIG--EDMKLVPVSIS----SMNEAHKAVAFYMGGNTPERRDFIVEN 604


>gi|307069626|ref|YP_003878103.1| putative DNA gyrase subunit B [Candidatus Zinderia insecticola
           CARI]
 gi|306482886|gb|ADM89757.1| putative DNA gyrase, B subunit [Candidatus Zinderia insecticola
           CARI]
          Length = 817

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 185/594 (31%), Positives = 315/594 (53%), Gaps = 30/594 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +  + Y+ +SI++L  LE ++ RP MYIG T D   LHHL  EVIDN++DE ++G+ NLI
Sbjct: 2   NTINKYNENSIKVLNSLEAIKKRPDMYIGSTNDGSGLHHLIFEVIDNSIDEFLSGFCNLI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKS---TLEIILTTLHAGGKFDNSTYEISGGL 154
            + +  N ++++ DNGRGIP+       N       EI++T LH+G KF+N +Y+IS GL
Sbjct: 62  NIKIYKNNYISIYDNGRGIPINIKEDDNNIPLRSAAEIVMTELHSGSKFNNKSYKISSGL 121

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGI------------PLSPLEKKEKVRNK 202
           HGVG+S +NALS  + + + +    +  +F  GI              S ++   K +  
Sbjct: 122 HGVGLSCLNALSKRVKLIIYKNKKKYFLEFKFGILQNRKIYIKNNIKYSKVKIIGKTKK- 180

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
           RGT+I F  + KIF +        + +  ++ ++L+ ++K      +   +K        
Sbjct: 181 RGTKIKFLLNKKIFKNIYP-SYDIIYEKLKTLSFLNKKLKINIIDFRIKKKKKIKFNNGI 239

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
             +   +    +   E    +   I + +         +++          +I  Y N I
Sbjct: 240 INYLKNININKKIIGEKIIKMKKLINSIEISIFILWNFSIK---------SKILCYTNNI 290

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRA-ISIISDDLMISAVGILSVFIREPEFAG 381
           +   GG H   L+ ++TR I KY +  + K+  I I  DD+      ILS+ +  P+F  
Sbjct: 291 IQKNGGIHLITLKTSITRIINKYIKKNKFKKNNIEISGDDIREGMNCILSLKMSNPKFNS 350

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NR 440
           Q K KL+S + +  +E  + +  + +L +N + +  + + +I  +  R++ +  + + ++
Sbjct: 351 QIKDKLISEEVRLPIEELIFNKLNIFLKKNILFSKNICKKIINSAISRIKIKNNKMIISK 410

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
             +   + L  KL++C +     +EL+IVEGDSAGGSAKQARNR  QA+LPLRGK+LNV 
Sbjct: 411 LFSKNNIYLSSKLSECQEKNPKISELYIVEGDSAGGSAKQARNRKFQAILPLRGKVLNVE 470

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFF 559
            +  EKI  ++QI  L+  LG +        + L+Y  +IIMTDAD+DGAHI +LLLT F
Sbjct: 471 KSNFEKIIKSKQITTLLTILGLKIEKNKFYIKKLKYNNIIIMTDADIDGAHIRTLLLTLF 530

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613
           Y+ + +LI ++++++  PPL++I +  +S+Y  ++    K +  F       I 
Sbjct: 531 YRYIPELINKQYVYIAQPPLYKIKKKKESIYFKNDIEFNKYILNFFSKKINFIS 584



 Score = 94.9 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 23/123 (18%)

Query: 579 LFRITQ-----GTKSVYAHDEEHKQKI--------------LEEFKKHGKGKIEISRFKG 619
           ++ I++       K +Y +D + K+K               L  F    K  I + R+KG
Sbjct: 695 IYNISKIFLYLKNKKIYVYDLDKKKKKIFYKKINIKNFKKILNYFLIKFKKNINLQRYKG 754

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679
           LGEM ++QL +T M+   R+LL+V+I     ++K T    N LMG     R  FI+    
Sbjct: 755 LGEMNSNQLWKTTMNPKTRSLLKVKI----KNIKYTNKLFNDLMGNNIKARKIFIEFNYL 810

Query: 680 FID 682
           +++
Sbjct: 811 YLN 813


>gi|45191011|ref|NP_985265.1| AER410Wp [Ashbya gossypii ATCC 10895]
 gi|44984079|gb|AAS53089.1| AER410Wp [Ashbya gossypii ATCC 10895]
          Length = 1427

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 148/681 (21%), Positives = 262/681 (38%), Gaps = 60/681 (8%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----------------------E 71
              ++AS+ Y     + +  LE +  RP  YIG  +                        
Sbjct: 6   TKEKNASETY-----QKITQLEHILKRPDTYIGSVEMQDFHMWVHDAEMDCMVEKQVNIV 60

Query: 72  KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKST 129
             L  +F E+I NA D  +       IEV ++    ++ V ++G GIP+E H K      
Sbjct: 61  PGLFKIFDEIIVNAADNKVRDPSMKKIEVVINREENYIEVKNDGNGIPIEVHAK-EGIYI 119

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN--TIFSQKFSRG 187
            E+I   L     +D++  +++GG +G G  + N  S E  +  +       + QK+   
Sbjct: 120 PELIFGHLLTSSNYDDNEKKVTGGRNGYGAKLCNIFSTEFILETSDPKSGQKYVQKWESN 179

Query: 188 IPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           + +    K    +     T+ITF+PD + FG +   D   L  M +    ++G V+    
Sbjct: 180 MNVCHPPKITSYKKGPSYTKITFKPDLQRFGMEVLDD-DILGVMRRRVYDINGSVRDVNV 238

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
                + K    +     +   L+             +SE     T          E   
Sbjct: 239 SLNGKSLKIRNFKSYMELYMRSLEKKRLIDSGMAPESASEKVNAPTILYEKVNDRWELGF 298

Query: 307 AWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISA 366
           A  + + +  S+ N+I T  GGTH + L   + + + +       K+  ++    +  + 
Sbjct: 299 AVSDISFQQISFVNSIATTSGGTHVNYLTDQIVKKVSELLS----KKKKTVKPFQIRNNI 354

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
              ++  I  P F  QTK +L +       +  +   F + +++  +            +
Sbjct: 355 FIFINCLIENPAFTSQTKEQLTTRVRDFGSKCEVSSDFINKIMKTELATKIFEIADENAA 414

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN--- 483
           +      KQ +  RK  I                 H   L + EGDSA   A    +   
Sbjct: 415 K----LLKQTDGTRKNRITDYPKLEDANKAGTKEGHKCTLVLTEGDSALSLAVAGLSVVG 470

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVII 540
           R      PL+GKILNV  A  E+IR N +I  + + +G + + QY  ED   LRY  V+I
Sbjct: 471 RDYYGCFPLKGKILNVRDASVEQIRKNTEIQAIKKIMGLQHKKQYTIEDMKTLRYGHVMI 530

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQ---GTKSVYAHDEEH 596
           MTD D DG+HI  LL+ FF      L++    L     P+ ++T      + +  ++   
Sbjct: 531 MTDQDHDGSHIKGLLINFFESTFPGLLDIPGFLIEFITPIMKVTILKPKKQVIPFYNLPD 590

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            +K  +   +  K   +   +KGLG     + +E     +        +N D        
Sbjct: 591 YEKWRDT--ESHKYVWKTKYYKGLGTSSFQEAREYFSALDVHIKKFHSLNPD--DSSLID 646

Query: 657 DSINKLMGTKADERFKFIQER 677
            + +K    KAD+R +++++ 
Sbjct: 647 LAFSK---KKADDRKEWLRQY 664


>gi|18369822|dbj|BAB84106.1| DNA topoisomerase II [Talaromyces flavus var. flavus]
          Length = 1094

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 143/677 (21%), Positives = 259/677 (38%), Gaps = 67/677 (9%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVI 82
           +   + L   E +  RP  YIG T+                          L+ +F E++
Sbjct: 1   SDKYQKLSPREHIIKRPDTYIGSTEMTPQQMWVYSSATEGMEFREVTYVPGLYKIFDEIV 60

Query: 83  DNAMDEVIAG-YANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140
            NA D        + I V++D   G ++V +NGRGIP+E H K       E+I   L   
Sbjct: 61  VNAADNKQNDKNMDEIRVTIDRESGVISVWNNGRGIPIEMHAK-EKIYVPELIFGHLLTS 119

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK--FSRGIPLSPLEKKEK 198
             +D++  +++GG +G G  + N  S E  +     +     K  ++  +      K  +
Sbjct: 120 SNYDDTQQKVTGGRNGYGAKLCNVFSTEFILETQDSHQKKRYKQTWTDNMTKVGKAKITE 179

Query: 199 VRNKRGTRITFRPDP-KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
            + +  T++TF+PD  K        D   L+K        + +V    +  +     +  
Sbjct: 180 AKGEDFTKVTFKPDYAKFGMTGIDDDFEALVKRRVYDLAGTAKVAVKLNGSRIPIRNFKK 239

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS 317
                 Y     K   + + ++      EI T             E   A  + + +  S
Sbjct: 240 ------YMEMYTKAIRRERGDDGPAPKDEIITCS------PDPRWEVGFAVSDGSFQQVS 287

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREP 377
           + N+I T  GGTH + +   +   +       +NK   ++    L       ++  I  P
Sbjct: 288 FVNSIATTSGGTHVNYIADQICGRLAT-ELKKKNKNGATLKPAQLRNHIFIFVNALIVNP 346

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
            F  QTK +L +   Q   +  L D F   +++  + +      ++  +  +  +  ++ 
Sbjct: 347 AFTSQTKEQLTTKQTQFGSKCPLEDDFYKKILKTNVMSN-----ILSFAAHKADQMLKKT 401

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRG 494
              + +                  H   L + EGDSA G A   R         V PLRG
Sbjct: 402 DGGRRSRMNNPKLTDANKAGTKEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRG 461

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIAS 553
           K+LNV  A  E+I  N +I ++   +G + + +Y +   LRY  ++IMTD D DG+HI  
Sbjct: 462 KLLNVRDASFEQISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKG 521

Query: 554 LLLTFFYQEMYDLIEQK-HLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKH 607
           LL+ F   +   L++    L     P+ ++ +G     T+          +   E  K  
Sbjct: 522 LLINFLQAQFPSLLKIPEFLIEFITPIVKVWKGDPKNPTRQHSFFTMPEYEAFREAHKNE 581

Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667
              + E   +KGLG       +    D ++       I    N     + + +K    KA
Sbjct: 582 ---RWEHKYYKGLGTSTTEDAQVYFRDLDRHLKEFHTIQD--NEAALIELAFSK---KKA 633

Query: 668 DERFKFIQE--RASFID 682
           DER +++++    +++D
Sbjct: 634 DERKEWLRQFRPGTYLD 650


>gi|328353447|emb|CCA39845.1| DNA topoisomerase II [Pichia pastoris CBS 7435]
          Length = 1312

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 155/715 (21%), Positives = 277/715 (38%), Gaps = 65/715 (9%)

Query: 12  LPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD- 70
            PP S GS+    ++G    S A  N + SD Y     + L  LE +  RP  YIG  + 
Sbjct: 36  TPPASNGSAVNNSENGTTRSSTA-NNVNVSDQY-----QKLSQLEHILKRPDTYIGSVEK 89

Query: 71  ----------------------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGF 106
                                    L  +F E++ NA D  I       IEV++      
Sbjct: 90  HESEQWIYNKETESMERKVVSIVPGLFKIFDEILVNAADNKIRDPSMKNIEVTIKPEENL 149

Query: 107 LTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALS 166
           + V ++G+GIPV+ H K  +    E+I   L     +++   +++GG +G G  + N  S
Sbjct: 150 IEVKNDGKGIPVQIHDK-EHIYIPELIFGNLLTSSNYNDDQKKVTGGRNGYGAKLCNIFS 208

Query: 167 DELHVTVARQN--TIFSQKFSRGIPLSPLEKKEKVRNKR-GTRITFRPDPKIFGDK--AG 221
            E  V    ++   +++Q++S+ +  +     + ++     T+++FRPD   F       
Sbjct: 209 TEFIVETYDKSSGKLYTQRWSQNMGKTDKPVIKSIKKATEYTKVSFRPDLAKFNMTELDE 268

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
                L +           +    + +K     +    +            ++T+  +  
Sbjct: 269 DILGVLRRRVFDLCGSVRDISVKLNGEKLKIRNFKQYVEMYVKALEHKNDPIKTEDSSLL 328

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
              S     +T    T     E A A  +      S+ N+I T  GGTH + +   + + 
Sbjct: 329 PPPSSSSPSQTIVYQTLNDRWEIAFAVSDSTFNQVSFVNSIATTSGGTHVNFIADQIVKK 388

Query: 342 IKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
           I+K  +    K  I      +  +    ++  +  P F  QTK +L +  +Q   +    
Sbjct: 389 IEKEIKTKNKKAMIK--PFQIKNNMFLFINCLVENPAFTSQTKEQLTTRASQFGGKKTEV 446

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIA 461
                  +        +L+     +++ L++      NR T   KL    K         
Sbjct: 447 PDDFIKKILRTGIVDAILDIAAMNADKALKKNDGSRKNRITGYPKLEDANK---AGTKEG 503

Query: 462 HGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
           +   L + EGDSA   A        R    V PLRGK+LNV  A +++I  N +I  + Q
Sbjct: 504 YKCTLILTEGDSASSLAVAGLAVVGRDYYGVYPLRGKMLNVREASADQIMKNAEIQAIKQ 563

Query: 519 ALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK-HLFL 574
            +G + +  Y  E+   LRY  ++IMTD D DG+HI  L++ F       L++    L  
Sbjct: 564 IMGFQHKKNYTPENINSLRYGHIMIMTDQDHDGSHIKGLIINFLESSFPGLLKVPNFLLE 623

Query: 575 ISPPLFRIT-----QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
              P+ ++T     +  K +  +     +   E+  +  K K     +KGLG  LA +++
Sbjct: 624 FITPIVKVTITSGPEKRKVIPFYSMPEYEAWREQNTESFKQK----YYKGLGTSLAEEMR 679

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ--ERASFID 682
           E     +K       +            + +K    KAD+R ++++  E    +D
Sbjct: 680 EYFSQLDKHMKTFHALQDV--DPGFIDLAFSK---KKADDRKEWLRGFEPGVHLD 729


>gi|150951045|ref|XP_001387295.2| DNA topoisomerase II [Scheffersomyces stipitis CBS 6054]
 gi|149388275|gb|EAZ63272.2| DNA topoisomerase II [Pichia stipitis CBS 6054]
          Length = 1439

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 144/716 (20%), Positives = 272/716 (37%), Gaps = 66/716 (9%)

Query: 15  QSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD---- 70
                +     +     +   +  +AS+ Y     + L  LE +  RP  YIG  +    
Sbjct: 39  TPLSDATNTPLTSTDSSNGTKSKSNASETY-----QKLSQLEHILKRPDTYIGSVERTKM 93

Query: 71  -------------------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTV 109
                                 L+ +F E++ NA D  I       I V +D  N  + V
Sbjct: 94  EMWSYDEASDEMVYKEVSIVPGLYKIFDEILVNAADNKIRDPTMKNIRVKIDPENNTIQV 153

Query: 110 VDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDEL 169
           +++GRGIP+E H K       E+I   L     +D+   +++GG +G G  + N  S E 
Sbjct: 154 MNDGRGIPIEIHEK-EKIYIPELIFGNLLTSSNYDDDEKKVTGGRNGFGAKLCNIFSTEF 212

Query: 170 HVTVARQNTI--FSQKFSRGIPLSPLEKKEK-VRNKRGTRITFRPDPKIFGDK--AGFDA 224
            +  A  NT   + Q ++  +      K  K    K  T+++FRPD   FG +       
Sbjct: 213 QLETADLNTELLYKQTWTGNMSQVTKPKITKLKTKKEYTKVSFRPDLSKFGMESLDEEIL 272

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
           + L +                +  K     +    +               +  N +  +
Sbjct: 273 SVLRRRVYDLCGTVKDCNVYLNDKKLNVRNFKSYVEMYVNAIKKRSPDTALEENNGTKYT 332

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKK 344
           + +               E A A  + +    S+ N+I T  GGTH   +   +   + +
Sbjct: 333 TVVH-------EVFNDRWELAFAVSDGSFNQVSFVNSIATTSGGTHVKYVSDQIINKLVE 385

Query: 345 -YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDP 403
             ++  + K+ + I   ++  +    L+  I  P F  QTK +L +  +Q   + + +  
Sbjct: 386 TLSKKEKGKKKLMIKPQEVRNNMFLFLNCLIENPAFTSQTKEQLTTRVSQFGGKPSEKLV 445

Query: 404 FDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHG 463
                +   ++ + + +     +    +  ++ + ++K+ I+                + 
Sbjct: 446 ISDNFISKILKTSIVDKIRDIANANEDKALQKADGSKKSRIKGQVKLVDANKAGTRDGNK 505

Query: 464 TELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
             L + EGDSA   A        R      PLRGK+LNV  A +++I  N +I  L Q +
Sbjct: 506 CTLILTEGDSALSLAVSGLAVVGRDYYGCFPLRGKLLNVREASADQIAKNTEINALKQII 565

Query: 521 GCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLIS 576
           G + +  Y  E+   LRY  ++IMTD D DG+HI  L++ F       L+     L    
Sbjct: 566 GLQHKKVYTPENAKTLRYGHIMIMTDQDQDGSHIKGLIINFLETSFPGLLNIPGFLLEFI 625

Query: 577 PPLFRITQ-----GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
            P+ ++T      G + +  ++    +   E   + G  +     +KGLG     + ++ 
Sbjct: 626 TPIIKVTIKKRGGGKEVIPFYNMPEFETWRER--EGGNSRWSHKYYKGLGTSTPLEARQY 683

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ--ERASFID-DV 684
               +K  L R       +  +    + +K    KADER +++Q  +  + +D ++
Sbjct: 684 FSALDKH-LKRFH-ALQEDDKQYIDLAFSK---KKADERKEWLQGFQPGTHLDPNL 734


>gi|164663033|ref|XP_001732638.1| hypothetical protein MGL_0413 [Malassezia globosa CBS 7966]
 gi|159106541|gb|EDP45424.1| hypothetical protein MGL_0413 [Malassezia globosa CBS 7966]
          Length = 1376

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 146/699 (20%), Positives = 264/699 (37%), Gaps = 90/699 (12%)

Query: 19  SSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-------- 70
           ++           +   A +SASD Y     + L  LE V  RP  YIG  +        
Sbjct: 2   TTSTEAGVASPAPTSRPAPKSASDTY-----QKLSQLEHVLRRPDTYIGSVERRTETMWV 56

Query: 71  ---------------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNG 113
                              + +F E++ NA D  +     + ++V++D + G ++V +NG
Sbjct: 57  YDVAKEQMAYRDTSYVPGFYKIFDEILVNAADNKVRDPSMDTMKVTIDKDAGTISVWNNG 116

Query: 114 RGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTV 173
           +GIPVE H K       E+I   L     +D+   +++GG +G G  + N  S E  V  
Sbjct: 117 QGIPVEIHEK-EQVYIPELIFGNLLTSSNYDDDEAKVTGGRNGFGAKLTNIYSTEFIVET 175

Query: 174 ARQNTIFSQKF---SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           A +      K    +        +  +  R +  T ITF+PD  +F             +
Sbjct: 176 ADKQRELKYKQVFSNHMHDKDKPKITKNTRKEEYTCITFKPDLSLFH-MDSIHPDTEALL 234

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +    ++G                                          +    I   
Sbjct: 235 MKRVFDMAGTRVI-------------------------------RPHGGNPVPRPTIVYD 263

Query: 291 KTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
            +E  G      E   A  +      S+ N I T +GG H   +   +   I ++    +
Sbjct: 264 ASEDHGRL---WEVGFAVSDGTARQVSFVNNIATIKGGKHVDHVESQIVERIMEHL--KK 318

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            K+   I ++ +       ++  I  P F  QTK  L    +    +  + D F   +++
Sbjct: 319 GKKDAPIKANHIRQQLWIFVNCQIVNPTFDSQTKETLTLKPSAFGSKWVMPDDFAKKVLK 378

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           + +     ++ +++  ++R  +        + ++ KL      A   ++      L + E
Sbjct: 379 SGVI--DNVQSIVQYHQDRQLQATDGRKRSRVSVTKLEDA-NWAGTKRSAE--CTLILTE 433

Query: 471 GDSAGG---SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           GDSA G   S      R    V PLRGK+LNV  A  ++I+ N +I ++ + LG +    
Sbjct: 434 GDSAKGLAVSGLSEVGRDAYGVFPLRGKLLNVREATYDQIKKNTEIKNIKEILGLQHGKS 493

Query: 528 YREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK-HLFLISPPLFRITQG 585
           Y   D LRY  ++IMTD D DG+HI  L++ +       L++    L     P+ + T+G
Sbjct: 494 YSTVDGLRYGSLMIMTDQDFDGSHIKGLIINYLDHFYPSLLKIPNFLVEFITPIIKATKG 553

Query: 586 TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645
            +          ++        G        +KGLG     ++KE   D ++  L    I
Sbjct: 554 QEVRSFFTIPEFEQWKAT--GDGGRGWTTKYYKGLGTSKPYEMKEYFRDMDRHMLSFDTI 611

Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQE--RASFID 682
             + + L     + NK    KAD+R +++++    +++D
Sbjct: 612 RPEDHDL--LDLAFNK---KKADDRKEWLRQFVPGTYLD 645


>gi|38453803|dbj|BAD02202.1| DNA topoisomerase II [Arthroderma gypseum]
          Length = 1086

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 140/672 (20%), Positives = 263/672 (39%), Gaps = 66/672 (9%)

Query: 51  ILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDNAMD 87
            +  LE +  RP  YIG  +                          L+ +F E++ NA D
Sbjct: 1   KITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAAD 60

Query: 88  EVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
                   + I V+LD   G ++V +NGRGIPVE H K  +    E+I   L     +++
Sbjct: 61  NKQNDPSMSEIRVTLDKEAGEISVWNNGRGIPVEIHKK-EHIYIPELIFGHLLTSSNYND 119

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
              +++GG +G G  + N  S+E  V  A       F   +++ +      K  + +   
Sbjct: 120 MQEKVTGGRNGYGAKLCNIFSNEFTVETADSSNKKKFKLTWTKNMSTMGKAKITESKGDD 179

Query: 204 GTRITFRPDP-KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            T++TF+PD  K   D    D   L+K        +       +  +   + +       
Sbjct: 180 YTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCGTTVKLNGTRIPVKSFKK----- 234

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
            Y     K     + E+ +   ++I T   ++        E      + + +  S+ N+I
Sbjct: 235 -YMEMYTKAIKTERGEDPTSDKNDIITESPDR------RWEIGFTVSDGSFQQVSFVNSI 287

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T  GGTH + +   +   +   A   +NK   ++ +  +       ++  I  P F  Q
Sbjct: 288 ATTSGGTHVNYISDQICNKLAD-ALKKKNKTGATLKAAQIKNHIFLFVNSQIVNPAFTSQ 346

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK +L +  +Q   +  + D F   +++  +        ++  +E++  +  ++    + 
Sbjct: 347 TKEQLTTRSSQFGSKCIVSDDFLKKVMKTRVMDD-----ILHFAEKKADQILKKTDGNRR 401

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNV 499
           +                  H   L + EGDSA G A   R         V PLRGK+LNV
Sbjct: 402 SRMNNPKLTDANKAGTKEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNV 461

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTF 558
             A  ++I  N +I ++   +G + + +Y +   LRY  ++IMTD D DG+HI  LL+ +
Sbjct: 462 RDASVDQISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINY 521

Query: 559 FYQEMYDLIEQ-KHLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKGKI 612
                  L++    L     P+ ++ +G     T S         ++  E        K 
Sbjct: 522 LQVAFPTLLKIPGFLIEFITPIVKVWKGDPKNPTHSKSFFTLPEYEEWKEAHA--HDKKW 579

Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
           +   +KGLG       +    D ++       +       +  + + +K    KADER +
Sbjct: 580 QKKYYKGLGTSSTEDAQVYFQDLDRHLKQFHTLQD--KEAELIELAFSK---KKADERKE 634

Query: 673 FIQE--RASFID 682
           ++++    +++D
Sbjct: 635 WLRQFKPGTYLD 646


>gi|224023524|ref|ZP_03641890.1| hypothetical protein BACCOPRO_00226 [Bacteroides coprophilus DSM
           18228]
 gi|224016746|gb|EEF74758.1| hypothetical protein BACCOPRO_00226 [Bacteroides coprophilus DSM
           18228]
          Length = 648

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 188/692 (27%), Positives = 302/692 (43%), Gaps = 97/692 (14%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEV 89
              Q+   +Y   +IR L  +E VR RPGMYIG        E  ++ L  EV+DN +DE 
Sbjct: 7   NEQQNTPVSYTEENIRHLSDMEHVRTRPGMYIGRLGDGSQAEDGIYVLLKEVVDNCIDEF 66

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
             G    I++ ++ N  ++V D GRGIP+          +L   ++ L+ GGK+D   ++
Sbjct: 67  KMGAGKRIDIQMEDNLRVSVRDYGRGIPLG---------SLVDAVSMLNTGGKYDTKAFK 117

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
            S GL+GVG   VNALS        R   +    F++G  +S          + GT I F
Sbjct: 118 KSVGLNGVGAKAVNALSSRFVARSVRDGQMREAIFTQGNLISDTTS--STDEENGTYIFF 175

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD  +F +   F    +  M ++  YL+  +   ++  + I                GL
Sbjct: 176 EPDNTLFLNYH-FRPEFIETMLRNYTYLNTGLAIYYNGHRII-------------SRNGL 221

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           +  L   + ++ L       G+          +E A     +   E  S+ N   T +GG
Sbjct: 222 EDLLNDNMTSQGLYPIIHLKGE---------DIEIAFTHSPQYGEEYYSFVNGQHTTQGG 272

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           TH+S  +  L R IK++          ++   D+    V  +++ + EP F  QTK KL 
Sbjct: 273 THQSAFKEHLARTIKEFFG-------KNMEFQDIRNGLVAAVAINVIEPTFESQTKIKLG 325

Query: 389 SLDAQR------------------TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SL                       V + +++  D+YL ++   A  LL+ + E  +ER 
Sbjct: 326 SLTMAPEKDSDGNPYPLSGVSVNKFVGDFVKENVDNYLHKHADVAEVLLQKIQESEKERK 385

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQN--------------IAHGTELFIVEGDSAGG 476
                 ++ R+ A +      KL DC  +                  + +FI EGDSA G
Sbjct: 386 AIAGVTKIARERAKKANLHNRKLRDCRIHLNDVKTGKKDDEDDPRAESSIFITEGDSASG 445

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           S  ++R+ + QAV  LRGK LN      + +  N++   L  AL          + LRY 
Sbjct: 446 SITKSRDVNTQAVFSLRGKPLNSFGLTKKVVYENEEFNLLQAALNIEDGL----DGLRYN 501

Query: 537 KVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTK----SVYAH 592
           KVI+ TDADVDG HI  L++TFF Q   DLI++ H++++  PLFR+    K    ++Y +
Sbjct: 502 KVIVATDADVDGMHIRLLMMTFFLQFFPDLIKKGHVYILQTPLFRVRNRKKGVYETIYCY 561

Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652
            +E +   +E+   +     EI+RFKGLGE+   + +          L +V + K     
Sbjct: 562 TDEERVAAIEKLGPN----PEITRFKGLGEISPDEFRNFIG--KDMRLEQVTLRK----T 611

Query: 653 KDTQDSINKLMGTKADERFKFIQERASFIDDV 684
              ++ +   MG    ER  FI +     +D+
Sbjct: 612 DAVRELLEFYMGKNTMERQNFIIDNLVVEEDL 643


>gi|38453807|dbj|BAD02204.1| DNA topoisomerase II [Arthroderma persicolor]
          Length = 1086

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 141/672 (20%), Positives = 262/672 (38%), Gaps = 66/672 (9%)

Query: 51  ILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDNAMD 87
            +  LE +  RP  YIG  +                          L+ +F E++ NA D
Sbjct: 1   KITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAAD 60

Query: 88  EVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
                   + I V+LD   G ++V +NGRGIPVE H K       E+I   L     +++
Sbjct: 61  NKQNDPSMSEIRVTLDKEAGEISVWNNGRGIPVEIHKK-EQIYIPELIFGHLLTSSNYND 119

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK--FSRGIPLSPLEKKEKVRNKR 203
              +++GG +G G  + N  S+E  V  A  +     K  ++  +      K  + +   
Sbjct: 120 MQEKVTGGRNGYGAKLCNIFSNEFTVETADSSKKKKFKLTWTNNMSTMGKAKITESKGDD 179

Query: 204 GTRITFRPDP-KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            T++TF+PD  K   D    D   L+K        +       +  +   + +       
Sbjct: 180 YTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCGTAVKLNGTRIPIKSFKK----- 234

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
            Y     K     + E+ +   ++I T   ++        E      + + +  S+ N+I
Sbjct: 235 -YMEMYTKAIKTERGEDPTSDKNDIITESPDR------RWEIGFTVSDGSFQQVSFVNSI 287

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T  GGTH + +   +   +   A   +NK   ++ +  +       ++  I  P F  Q
Sbjct: 288 ATTSGGTHVNYISDQICNKLAD-ALKKKNKTGATLKAAQIKNHIFLFVNSQIVNPAFTSQ 346

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK +L +  +Q   +  + D F   +++  +        ++  +E++  +  ++    + 
Sbjct: 347 TKEQLTTRASQFGSKCIVSDEFLKKVMKTRVMDD-----ILHFAEKKADQILKKTDGNRR 401

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNV 499
           +                  H   L + EGDSA G A   R         V PLRGK+LNV
Sbjct: 402 SRMNNPKLTDANKAGTKEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNV 461

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTF 558
             A  ++I  N +I ++   +G + + +Y +   LRY  ++IMTD D DG+HI  LL+ +
Sbjct: 462 RDASVDQISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINY 521

Query: 559 FYQEMYDLIEQ-KHLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKGKI 612
                  L++    L     P+ ++ +G     T S         ++  E        K 
Sbjct: 522 LQVAFPTLLKIPGFLIEFITPIVKVWKGDPKNPTHSKSFFTLPEYEEWKETHA--HDKKW 579

Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
           +   +KGLG       +    D +K       +       +  + + +K    KADER +
Sbjct: 580 QKKYYKGLGTSSTEDAQIYFQDLDKHLKEFHTLQD--KEAELIELAFSK---KKADERKE 634

Query: 673 FIQE--RASFID 682
           ++++    +++D
Sbjct: 635 WLRQFKPGTYLD 646


>gi|38453819|dbj|BAD02210.1| DNA topoisomerase II [Trichophyton verrucosum]
          Length = 1089

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 138/672 (20%), Positives = 259/672 (38%), Gaps = 64/672 (9%)

Query: 51  ILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDNAMD 87
            +  LE +  RP  YIG  +                          L+ +F E++ NA D
Sbjct: 1   KITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAAD 60

Query: 88  EVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
                   + I V+LD   G ++V +NGRGIPVE H K       E+I   L     +++
Sbjct: 61  NKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKK-EQTYIPELIFGHLLTSSNYND 119

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK--FSRGIPLSPLEKKEKVRNKR 203
              +++GG +G G  + N  S+E  V  A        K  ++  +      K  + +   
Sbjct: 120 MQEKVTGGRNGYGAKLCNIFSNEFTVETADSKQKKKFKLTWTNNMSTMGKAKITECKGDD 179

Query: 204 GTRITFRPDP-KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            T++TF+PD  K   D    D   L+K        +       +  +   + +    +  
Sbjct: 180 YTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCGTAVKLNGTRIPIKSFKKYMEMY 239

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
                  +    T   +++ I +E          +     E      + + +  S+ N+I
Sbjct: 240 TKAIKAERGEDPTSASDKNDIITE----------SPDRRWEIGFTVSDGSFQQVSFVNSI 289

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T  GGTH + +   +   +   A   +NK   ++ +  +       ++  I  P F  Q
Sbjct: 290 ATTSGGTHVNYISDQICNKLAD-ALKKKNKTGATLKAAQIKNHIFLFVNSQIVNPAFTSQ 348

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK +L +  +Q   +  + D F   +++  +        ++  +E++  +  ++    + 
Sbjct: 349 TKEQLTTRPSQFGSKCVVSDDFLKKVMKTRVMDD-----ILHFAEKKADQILKKTDGNRR 403

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNV 499
           +                  H   L + EGDSA G A   R         V PLRGK+LNV
Sbjct: 404 SRMNNPKLTDANKAGTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNV 463

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTF 558
             A  ++I  N +I ++   +G + + +Y +   LRY  ++IMTD D DG+HI  LL+ +
Sbjct: 464 RDASVDQISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINY 523

Query: 559 FYQEMYDLIEQ-KHLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKGKI 612
                  L++    L     P+ ++ +G     T S         ++  E        K 
Sbjct: 524 LQVAFPTLLKIPGFLIEFITPIVKVWKGDPKNPTHSKSFFTIPEYEEWKEAHA--HDKKW 581

Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
           +   +KGLG       +    D ++       +       +  + + +K    KADER +
Sbjct: 582 QKKYYKGLGTSSTEDAQIYFQDLDRHLKQFHTLQD--KEAELIELAFSK---KKADERKE 636

Query: 673 FIQE--RASFID 682
           ++++    +++D
Sbjct: 637 WLRQFKPGTYLD 648


>gi|189193341|ref|XP_001933009.1| DNA topoisomerase 2 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187978573|gb|EDU45199.1| DNA topoisomerase 2 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1722

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 148/714 (20%), Positives = 278/714 (38%), Gaps = 77/714 (10%)

Query: 4   DSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPG 63
            S    + +P +S G  +        P         AS  Y     ++L  LE +  RP 
Sbjct: 109 SSGKPLADIPNESFGGDDDDDVPISKPK-----KGGASSKY-----QMLTHLEHIMKRPD 158

Query: 64  MYIGGTD-----------------------EKALHHLFSEVIDNAMDEVIAG-YANLIEV 99
            YIG  +                          L+ +F E++ NA D        + I V
Sbjct: 159 TYIGSVERQTDKMWVYNSESDSMEFRDVTYVPGLYKIFDEILVNAADNKQNDKNMSEIRV 218

Query: 100 SLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           ++D   G +++ ++G+GIP+E H +       E+I   L     +D+   +++GG +G G
Sbjct: 219 TVDRETGEISIKNDGKGIPIEIHKEH-GIYVPEMIFGHLLTSSNYDDDQQKVTGGRNGYG 277

Query: 159 ISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
             + N  S E  V      Q   + Q ++  +      K   +++   T+++++ D   F
Sbjct: 278 AKLCNVFSTEFTVETVDSKQKKKYRQTWTENMSKMGKAKISDIKSDDYTKVSWKADYARF 337

Query: 217 GD--KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           G         A + + T   A     VK   + D+         +   F     + T   
Sbjct: 338 GMTGIDDDFEAMVKRRTYDMAGTLRGVKVYLNGDRI--------KLTSFAKYMEMYTKSI 389

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGL 334
           ++ + +S    E     T+K        +   A  + +    S+ N+I T  GGTH + +
Sbjct: 390 SRDQGKSEDDKEKDVIITDK----LDRWDIGFAVSDGSFNQVSFVNSIATTSGGTHVNHI 445

Query: 335 RVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
              +   +       +NK A+ +    +       ++  I  P F  QTK +L +  +Q 
Sbjct: 446 ADQIVEKLMA-IVNKKNKAAVKLKPAQIKNHLFLFVNCSIVNPAFTSQTKEQLTTRPSQF 504

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454
             +  L D F      N I  T +++ ++  ++++  +  ++    K             
Sbjct: 505 GSKPVLSDKFL-----NAIAKTDVIQNIMHFAQQKADQMMKKTDGNKRNRISNAKLTDAN 559

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ---AVLPLRGKILNVASAGSEKIRNNQ 511
                  H   L + EG+SA   A   R   NQ    V PLRGK+LNV  A  ++I  N 
Sbjct: 560 KAGTKDGHLCTLILTEGESASVLALAGRAVVNQDLFGVFPLRGKLLNVRDATVDQIMKNA 619

Query: 512 QIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +I ++ + +G + + +Y   D   LRY  ++IMTD D DG+HI  LL+ F   +   L++
Sbjct: 620 EIQNIKKFMGLQHKKEYTMADMKSLRYGHLMIMTDQDHDGSHIKGLLINFLQCQFPSLLK 679

Query: 569 Q-KHLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
               L     P+ ++ +G                 ++  E+ +   +   +   +KGLG 
Sbjct: 680 IPGFLLEFITPIVKVWKGDPKNPRNMKSFFSMPEYEEWKEQHQ--HEKGWDHKYYKGLGT 737

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
                 +    D +   + R ++ ++    K  + + +K    KAD R  ++++
Sbjct: 738 SDIPDAQIYFKDLDTH-MKRFQVMREEEE-KLIELAFSK---KKADARKDWLRD 786


>gi|18369818|dbj|BAB84104.1| DNA topoisomerase II [Penicillium citrinum]
          Length = 1100

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 141/677 (20%), Positives = 264/677 (38%), Gaps = 66/677 (9%)

Query: 47  SSIRILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVID 83
              + L  LE +  RP  YIG  +                          L+ +F E++ 
Sbjct: 2   EQYQKLTQLEHIVKRPDTYIGSIEMTQQQMWVFNSETESMEFRNVSFVPGLYKIFDEIVV 61

Query: 84  NAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141
           NA D        + I V++D   G ++V +NGRGIP+E H K       E+I   L    
Sbjct: 62  NAADNKQNDKSMSEIRVTIDREKGEISVWNNGRGIPIEIHSK-EKIYVPELIFGNLLTSS 120

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK--FSRGIPLSPLEKKEK- 198
            +D++  +++GG +G G  + N  S E  +     N     K  ++  +      K    
Sbjct: 121 NYDDNQKKVTGGRNGFGAKLCNVFSTEFTLETQDSNQKKKYKQTWTENMTKMGKAKITDA 180

Query: 199 VRNKRGTRITFRPDP-KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
            + +  T +TF+PD  K   +    D   L+K+            T       +  +   
Sbjct: 181 SKGEDYTMVTFKPDFAKFGMEGIDDDFEALVKLLVVYDLAGTAGVTVKLNKTRVPIRNFK 240

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS 317
              + +      K   + + ++      EI T             E   +  +   +  S
Sbjct: 241 QYMQMY-----TKAIRRERGDDGPAPKDEILTCS------PDPRWEIGFSVSDGAFQQVS 289

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREP 377
           + N+I T  GGTH + +   +   +       +NK   ++ +  +       ++  I  P
Sbjct: 290 FVNSIATTSGGTHVNYIADQICNRLAD-QVKKKNKTGATLKAAQIRNHIFIFVNAQIVNP 348

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
            F  QTK +L +  +Q   +  L + F   +++     T ++  ++  + ++  +  ++ 
Sbjct: 349 SFNSQTKEQLTTKASQFGSKCVLEEEFYKKILK-----TDVMNNILHFAAQKADQILKKS 403

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRG 494
              +          +         H   L + EGDSA G A   R         V PLRG
Sbjct: 404 DGGRRTRMNNPKLVEANKAGTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRG 463

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIAS 553
           K+LNV  A  ++I  N +I ++   +G + + +Y E   LRY  ++IMTD D DG+HI  
Sbjct: 464 KLLNVRDASFDQISKNAEIQNIKNFIGLQHKKEYTETKGLRYGHLMIMTDQDHDGSHIKG 523

Query: 554 LLLTFFYQEMYDLIEQK-HLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKH 607
           LL+ F   +   L++    L     P+ ++ +G     TK          ++ LE  K  
Sbjct: 524 LLINFLQAQFPSLLKIPEFLIEFITPIIKVWKGDPKNPTKQRSFFTMPEYEEWLEAHK-- 581

Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667
           G+   +   +KGLG    +  +    D ++       +    +  +  + + +K    KA
Sbjct: 582 GERGWDHKYYKGLGTSSTTDAQVYFRDLDRHLKEFHTMKD--HEAELIELAFSK---KKA 636

Query: 668 DERFKFIQE--RASFID 682
           DER +++++    +++D
Sbjct: 637 DERKEWLRQFKPGTYLD 653


>gi|313619194|gb|EFR90965.1| DNA topoisomerase 4 subunit B [Listeria innocua FSL S4-378]
          Length = 477

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 176/488 (36%), Positives = 264/488 (54%), Gaps = 23/488 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + Y+  SI++LEGLE VR RP MYIG TD + LHHL  E++DN++DE +AG+   I V+L
Sbjct: 4   NEYNDDSIQVLEGLEAVRKRPAMYIGSTDVRGLHHLVYEIVDNSVDETLAGFGKKIVVTL 63

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGVGIS 160
             +G ++V D GRG+PV  H     KST+E+ILT LHAGGKF     Y+ SGGLHGVG S
Sbjct: 64  HDDGSVSVSDEGRGMPVGMHK--TGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGVGSS 121

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ L VT+ R    + QKF  G       KK       GT I F+PDP IF    
Sbjct: 122 VVNALSEWLVVTINRDGATYQQKFKDGGKPDGTLKKIGKSKATGTTIRFKPDPVIFPT-T 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F+   L +  +  A+L   +      ++       +   E F+F  G+K +++   E +
Sbjct: 181 SFNYETLSERLRESAFLLKGMLIQLVDER-------VGMAESFHFEEGVKNFVEYINEGK 233

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
            ++     + + E        VE A  + +     I S+ N + T   G+HESG++ A+T
Sbjct: 234 DVLHPV-VSFEGENATI---EVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMT 289

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395
           R    YA       ++  ++   D+      +LS+ + E   +F GQTK KL + +A++ 
Sbjct: 290 RIFNDYARRVNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQA 349

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGK 452
           V+  + +   ++L +NP  ++ L++  ++  E R   RK RE  R    +K     L GK
Sbjct: 350 VDAVVAEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGK 409

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L        +  EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I  N++
Sbjct: 410 LTPAQSRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEE 469

Query: 513 IMDLVQAL 520
           I  ++  +
Sbjct: 470 ISTIIHTV 477


>gi|320580632|gb|EFW94854.1| DNA topoisomerase II [Pichia angusta DL-1]
          Length = 1372

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 151/721 (20%), Positives = 276/721 (38%), Gaps = 69/721 (9%)

Query: 15  QSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD---- 70
            S   ++K K      ++      SASD Y     + L  LE +  RP  YIG  +    
Sbjct: 13  ASTPQTQKRKPLSNSTNTTNGKKSSASDQY-----QKLSQLEHILKRPDTYIGSVEKIES 67

Query: 71  -------------------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDG-NGFLTV 109
                                 L  +F E++ NA D  I       I+V +D  N  ++V
Sbjct: 68  EQWIYNEQTESMEKRTVNIVPGLFKIFDEILVNAADNKIRDPSMKKIDVKIDKENNVISV 127

Query: 110 VDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDEL 169
            ++G+GIPVE H K       E+I   L     +D+   +++GG +G G  + N  S E 
Sbjct: 128 KNDGKGIPVEIHTK-EQIYIPELIFGNLLTSSNYDDDQKKVTGGRNGYGAKLCNIFSTEF 186

Query: 170 HVTVARQNTI--FSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPDPKIFGDKAGFDAAR 226
            V  A +NT   ++Q +   +  +   K   ++ +   T + F+PD   FG ++  D   
Sbjct: 187 TVRTADKNTQLLYTQTWRNNMSETGKPKISTMKKQEEYTEVIFKPDLSKFGMESLDDDIL 246

Query: 227 LLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSE 286
            +   +             S + +  + +   +  E Y     K         ++  S +
Sbjct: 247 GVLRRRVYDLCGSVRGVKVSLNGQQLKVHNFKQYVELYVKALEKEKGNLPAPVKTEDSED 306

Query: 287 IFTG--------KTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
                        T          E A +  +      S+ N+I T  GGTH   +   L
Sbjct: 307 GSLAPAPLSQPLPTIVHQVINDRWEVAFSISDGTFNQVSFVNSIATTAGGTHVELISNML 366

Query: 339 TRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
              I +  ++ +  +   I    +  +    ++  I  P F  QTK +L +  +Q   + 
Sbjct: 367 VTKIME--QIKKKSKTAIIKPIQIKNNMFLFVNCLIENPAFTSQTKEQLTTRASQFGGKK 424

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
                     V        +++     +++ L++      +R T   KL    K      
Sbjct: 425 LELPDSFVKKVLASGILESVMDIAQANADKALKKNDGSRKSRLTGYPKLEDANK---AGT 481

Query: 459 NIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
              H   L + EGDSA   A        R      PLRGK+LNV  A +++I  N +I  
Sbjct: 482 KEGHKCTLILTEGDSAKSLAVAGLAVVGRDYYGCYPLRGKMLNVREASTDQIMKNAEIQA 541

Query: 516 LVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ-KH 571
           + Q +G + + +Y   +   LRY  ++IM+D D DG+HI  L++ F       L+E    
Sbjct: 542 IKQIMGLQHKKRYDLSNINTLRYGHIMIMSDQDHDGSHIKGLIINFLETSFPGLLEIPGF 601

Query: 572 LFLISPPLFRITQ-----GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           L     P+ ++T        K +   +    ++  +   K      +   +KGLG  L +
Sbjct: 602 LIEFITPIVKVTILTGPDKNKKISFFNMPEYEEWRDTIGKTC--SYKQKYYKGLGTSLPT 659

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ--ERASFID-D 683
           +++E     ++       + +    +     + +K    KAD+R ++++  +  +F+D +
Sbjct: 660 EMREYFSQLDRHLKTFHTLQE--EDVSLIDLAFSK---KKADDRKEWLRGFQPGTFLDPN 714

Query: 684 V 684
           +
Sbjct: 715 L 715


>gi|38453825|dbj|BAD02213.1| DNA topoisomerase II [Arthroderma benhamiae]
          Length = 1089

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 138/672 (20%), Positives = 259/672 (38%), Gaps = 64/672 (9%)

Query: 51  ILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDNAMD 87
            +  LE +  RP  YIG  +                          L+ +F E++ NA D
Sbjct: 1   KITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAAD 60

Query: 88  EVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
                   + I V+LD   G ++V +NGRGIPVE H K       E+I   L     +++
Sbjct: 61  NKQNDPNMSEIRVTLDKQAGEISVWNNGRGIPVEIHKK-EQIYIPELIFGHLLTSSNYND 119

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK--FSRGIPLSPLEKKEKVRNKR 203
              +++GG +G G  + N  S+E  V  A        K  ++  +      K  + +   
Sbjct: 120 MQEKVTGGRNGYGAKLCNIFSNEFTVETADSKQKKKFKLTWTNNMSTMGKAKITECKGDD 179

Query: 204 GTRITFRPDP-KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            T++TF+PD  K   D    D   L+K        +       +  +   + +    +  
Sbjct: 180 YTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCGTAVKLNGTRIPIKSFKKYMEMY 239

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
                  +    T   +++ I +E          +     E      + + +  S+ N+I
Sbjct: 240 TKAIKAERGEDPTSASDKNDIITE----------SPDRRWEIGFTVSDGSFQQVSFVNSI 289

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T  GGTH + +   +   +   A   +NK   ++ +  +       ++  I  P F  Q
Sbjct: 290 ATTSGGTHVNYISDQICNKLAD-ALKKKNKTGATLKAAQIKNHIFLFVNSQIVNPAFTSQ 348

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK +L +  +Q   +  + D F   +++  +        ++  +E++  +  ++    + 
Sbjct: 349 TKEQLTTRPSQFGSKCVVSDDFLKKVMKTRVMDD-----ILHFAEKKADQILKKTDGNRR 403

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNV 499
           +                  H   L + EGDSA G A   R         V PLRGK+LNV
Sbjct: 404 SRMNNPKLTDANKAGTKDGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNV 463

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTF 558
             A  ++I  N +I ++   +G + + +Y +   LRY  ++IMTD D DG+HI  LL+ +
Sbjct: 464 RDASVDQISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINY 523

Query: 559 FYQEMYDLIEQ-KHLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKGKI 612
                  L++    L     P+ ++ +G     T S         ++  E        K 
Sbjct: 524 LQVAFPTLLKIPGFLIEFITPIVKVWKGDPKNPTHSKSFFTIPEYEEWKEAHA--HDKKW 581

Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
           +   +KGLG       +    D ++       +       +  + + +K    KADER +
Sbjct: 582 QKKYYKGLGTSSTEDAQIYFQDLDRHLKQFHTLQD--KEAELIELAFSK---KKADERKE 636

Query: 673 FIQE--RASFID 682
           ++++    +++D
Sbjct: 637 WLRQFKPGTYLD 648


>gi|106734227|gb|ABF82590.1| DNA topoisomerase IV subunit beta [Exiguobacterium sp. A19]
          Length = 488

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 195/498 (39%), Positives = 285/498 (57%), Gaps = 14/498 (2%)

Query: 63  GMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122
           GMYIG T  K LHHL  E++DN++DE +AGY + I+V+++    + V DNGRGIPV+   
Sbjct: 1   GMYIGSTASKGLHHLVWEIVDNSIDEALAGYCDTIKVTIEPGNSILVEDNGRGIPVDIQE 60

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
           K   +  +E+ILT LHAGGKF    Y++SGGLHGVG SVVNALS +L V V R   ++ Q
Sbjct: 61  KM-GRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTKLEVFVKRNEKLYYQ 119

Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
            + RG+P++ LE       + GT I F PD +IF +   +D   L    +  A+L+  + 
Sbjct: 120 AYHRGVPVADLEIIG-TSEETGTMIRFFPDDEIFQETLEYDYDLLATRLRELAFLNKGLT 178

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
              + D+        P    F++ GG+K+Y++    ++ ++  E       + G     V
Sbjct: 179 IEITDDR-----ADEPITRSFHYEGGIKSYVEHLNRSKEVVHEEPVYVHGNRDGI---EV 230

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IIS 359
           E A+ + +     I S+ N I T EGGTHE+G + ALTR I  YA+     +     +  
Sbjct: 231 EVALQYNDGFAANIYSFTNNIPTHEGGTHETGFKTALTRVINDYAKKFGLMKEADGTLSG 290

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           +D+      I+S+    P+F GQTKTKL + DA+   +      F+ ++++NP  A  ++
Sbjct: 291 EDVREGMTAIVSIKHPNPQFEGQTKTKLGNSDARTATDTLFSSAFEQFMMENPTSARAIV 350

Query: 420 EW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
           E  ++        +R +    RK  +    LPGKLADCS   A  +E++IVEGDSAGGSA
Sbjct: 351 EKGMMASRARMAAKRARELTRRKGVLEVSSLPGKLADCSSRDATISEIYIVEGDSAGGSA 410

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538
           K  R+R  QA+LP+RGKILNV  A  +KI  + +I  ++ ALG    S++  E  RY KV
Sbjct: 411 KSGRDRHFQAILPIRGKILNVEKARLDKILGSNEIRTIITALGTSIGSEFNIEKARYHKV 470

Query: 539 IIMTDADVDGAHIASLLL 556
           IIMTDADVDGAHI + ++
Sbjct: 471 IIMTDADVDGAHIRTPVI 488


>gi|241955060|ref|XP_002420251.1| DNA topoisomerase 2, putative [Candida dubliniensis CD36]
 gi|223643592|emb|CAX42474.1| DNA topoisomerase 2, putative [Candida dubliniensis CD36]
          Length = 1461

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 155/742 (20%), Positives = 276/742 (37%), Gaps = 94/742 (12%)

Query: 1   MTDDSIDLFST------LPPQSQGSSEKLKKSGEIPDSPA------------FANQSASD 42
           M+D   D F+       +P   + + +      + P + A                +AS+
Sbjct: 1   MSDSESDYFTDGSEDDFVPTSKKSTKKNASSKQKQPLADATNSTVSSSRSSTPKPSNASE 60

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFS 79
            Y     + L  LE +  RP  YIG  +                          L+ +F 
Sbjct: 61  TY-----QKLSQLEHILKRPDTYIGSVEKTKTEMWCFDADTESMVFKEVTIVPGLYKIFD 115

Query: 80  EVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137
           E++ NA D  I       I V +D  N  + V+++G+GIPVE H K  N    E+I   L
Sbjct: 116 EILVNAADNKIRDPSMKNIRVKIDAENNIIEVMNDGKGIPVEMHTK-ENMYIPELIFGNL 174

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN--TIFSQKFSRGIPLSPLEK 195
                +D++  +++GG +G G  + N  S +  V  A  N   ++ Q ++  +      K
Sbjct: 175 LTSSNYDDNEKKVTGGRNGFGAKLCNIFSTQFEVETADLNMGKLYKQSWTNNMSNVSKPK 234

Query: 196 KEK-VRNKRGTRITFRPDPKIFGDKA--GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
                  K  T+ITFRPD   F          + L +                +      
Sbjct: 235 ITTLKTKKEYTKITFRPDLSKFDMDCLDNDLLSVLRRRVYDLCGTVKNCNIYLN------ 288

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
           EK       + Y    +K   +   E      +         +       E A A  + +
Sbjct: 289 EKRLNISSFKSYVEMYVKAIKERSPEPEPQDGTIKNFTTIVHE-VFNDRWEVAFAVSDGS 347

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKK-YAELTQNKRAISIISDDLMISAVGILS 371
               S+ N+I T  GGTH   +   +   + +  ++  + K+ + I   ++  +    ++
Sbjct: 348 FNQVSFVNSIATTSGGTHVKYVSDQIINKLVETLSKKEKGKKKLMIKPQEVRDNMFLFIN 407

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
             I  P F  QTK +L +  +Q   ++        ++  + +    L   ++E+      
Sbjct: 408 CLIENPAFTSQTKEQLTTKVSQFGGKD-------KFVANDNLINRILKTSIVEKIRAIAN 460

Query: 432 RRKQREVNRKTAIRKLRLPGKLADCS-----QNIAHGTELFIVEGDSAGGSAKQARN--- 483
             + + + +    RK R+ G++             H   L + EG SA   A    +   
Sbjct: 461 ANEDKALQKADGSRKSRIKGQVNLVDANRAGTKDGHNCTLILTEGLSAMNLAVAGLSVVG 520

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVII 540
           R      PLRGK+LNV  A +++I  N +I  L Q +G + +  Y  E+   LRY  ++I
Sbjct: 521 RDYYGCFPLRGKLLNVREASADQIAKNSEINSLKQIIGLQHKKVYTAENIKSLRYGHIMI 580

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQ------GTKSVYAHD 593
           MTD D DG+HI  L++ F       L++    L     P+ ++T       G + +  + 
Sbjct: 581 MTDQDQDGSHIKGLIINFLETSFPGLLDIPGFLLEFITPIVKVTVRARGAGGKRVIPFYT 640

Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
               +   +   K  +       +KGLG     + +E     ++  L R           
Sbjct: 641 MPEFEHWRDTEGKQCR--WTQKYYKGLGTSTPMEAREYFTALDRH-LKRFH-ALQGEDKN 696

Query: 654 DTQDSINKLMGTKADERFKFIQ 675
               + +K    KADER +++Q
Sbjct: 697 YIDLAFSK---KKADERKEWLQ 715


>gi|330924028|ref|XP_003300481.1| hypothetical protein PTT_11728 [Pyrenophora teres f. teres 0-1]
 gi|311325363|gb|EFQ91408.1| hypothetical protein PTT_11728 [Pyrenophora teres f. teres 0-1]
          Length = 1723

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 148/714 (20%), Positives = 279/714 (39%), Gaps = 77/714 (10%)

Query: 4   DSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPG 63
            S    + +P +S G  +        P         AS  Y     ++L  LE +  RP 
Sbjct: 111 SSGKPLADIPNESFGGDDDDDVPISKPK-----KGGASSKY-----QMLTHLEHIMKRPD 160

Query: 64  MYIGGTD-----------------------EKALHHLFSEVIDNAMDEVIAG-YANLIEV 99
            YIG  +                          L+ +F E++ NA D        + I V
Sbjct: 161 TYIGSVERQTDKMWVYNSESDSMEFRDVTYVPGLYKIFDEILVNAADNKQNDKNMSEIRV 220

Query: 100 SLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           ++D   G +++ ++G+GIP+E H +       E+I   L     +D+   +++GG +G G
Sbjct: 221 TVDRETGEISIKNDGKGIPIEIHKEH-GIYVPEMIFGHLLTSSNYDDDQQKVTGGRNGYG 279

Query: 159 ISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
             + N  S E  V      Q   + Q ++  +      K   ++++  T+++++ D   F
Sbjct: 280 AKLCNVFSTEFTVETVDSKQKKKYRQTWTENMSKMGKAKISDIKSEDYTKVSWKADYARF 339

Query: 217 GD--KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           G         A + + T   A     VK   + D+         +   F     + T   
Sbjct: 340 GMSGIDDDFEAMVKRRTYDMAGTLRGVKVYLNGDRI--------KLTSFAKYMEMYTKSI 391

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGL 334
           ++ + +S    E     T+K        +   A  + +    S+ N+I T  GGTH + +
Sbjct: 392 SRDQGKSEDDKEKDVIITDK----LDRWDIGFAVSDGSFNQVSFVNSIATTSGGTHVNHI 447

Query: 335 RVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
              +   +       +NK A+ +    +       ++  I  P F  QTK +L +  +Q 
Sbjct: 448 ADQIVEKLMA-IVNKKNKAAVKLKPAQIKNHLFLFVNCSIVNPAFTSQTKEQLTTRPSQF 506

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454
             +  L D F      N I  T +++ ++  ++++  +  ++    K             
Sbjct: 507 GSKPVLSDKFL-----NAIAKTDVIQNIMHFAQQKADQMMKKTDGNKRNRISNAKLTDAN 561

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ---AVLPLRGKILNVASAGSEKIRNNQ 511
                  H   L + EG+SA   A   R   NQ    V PLRGK+LNV  A  ++I  N 
Sbjct: 562 KAGTKDGHLCTLILTEGESASVLALAGRAVVNQDLFGVFPLRGKLLNVRDATVDQIMKNA 621

Query: 512 QIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +I ++ + +G + + +Y   D   LRY  ++IMTD D DG+HI  LL+ F   +   L++
Sbjct: 622 EIQNIKKFMGLQHKKEYTMADMKSLRYGHLMIMTDQDHDGSHIKGLLINFLQCQFPSLLK 681

Query: 569 Q-KHLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
               L     P+ ++ +G                 ++  E+ +   +   +   +KGLG 
Sbjct: 682 IPGFLLEFITPIVKVWKGDPKNPRSMKSFFSMPEYEEWKEQHQ--HEKGWDHKYYKGLGT 739

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
                 +    D +   + R ++ ++    K  + + +K    KAD R  ++++
Sbjct: 740 SDIPDAQVYFKDLDTH-MKRFQVMREEEE-KLIELAFSK---KKADARKDWLRD 788


>gi|269799046|gb|ACZ43801.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 482

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 193/493 (39%), Positives = 296/493 (60%), Gaps = 17/493 (3%)

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           +   I V++  +G ++V D+GRGIPV+ H +    S  E+ILT LHAGGKFD+++Y++SG
Sbjct: 1   HCTDIVVTIHDDGSVSVSDDGRGIPVDIHEE-EGVSAAEVILTVLHAGGKFDDNSYKVSG 59

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS++L +T+ R   I +Q +  G+P  P+ +   V +  GT + F P 
Sbjct: 60  GLHGVGVSVVNALSEKLELTIFRHGKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFWPS 118

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            + F +   F    L K  +  ++L+  V      ++E        + + F + GG+K +
Sbjct: 119 HETFTNTL-FHYDILAKRLRELSFLNSGVSIKLIDERED------GKSDHFVYEGGIKAF 171

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           +     N++ I+ + F    E++     TVE A+ W +     I  + N I   +GGTH 
Sbjct: 172 VDYLNVNKTPINKDAFHFSVERED--GITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHL 229

Query: 332 SGLRVALTRGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           +G R ALTR +  Y E     +  ++ +   DD       ++SV + +P+F+ QTK KLV
Sbjct: 230 AGFRGALTRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLV 289

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKL 447
           S + +  VE A+ +    YL++NP EA+ ++  +I+ S  R   RK      RK A+   
Sbjct: 290 SSEVKSAVEQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKARDMTRRKGALDLA 349

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+
Sbjct: 350 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 409

Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
            ++Q++  L+ A+GC   R +Y  +  RY ++IIMTDADVDG+HI +LLLTFF+++M +L
Sbjct: 410 LSSQEVATLITAMGCGIGRDEYNPDKTRYHQIIIMTDADVDGSHIRTLLLTFFFRQMPEL 469

Query: 567 IEQKHLFLISPPL 579
           IE+ ++++  PPL
Sbjct: 470 IERGYIYIAQPPL 482


>gi|70568834|dbj|BAE06274.1| topoisomerase II [Scutellaria baicalensis]
          Length = 1469

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 138/711 (19%), Positives = 255/711 (35%), Gaps = 72/711 (10%)

Query: 15  QSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGG------ 68
           +   ++           +   + ++    Y          LE + +RP  YIG       
Sbjct: 6   KGPLTTSNNANIPPPDAAGGGSKKTIEQAYQKK-----TQLEHILLRPDTYIGSIERHTQ 60

Query: 69  ---------------TDEKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVD 111
                          T    L+ +F E++ NA D        N ++V++D  +  ++V +
Sbjct: 61  TLWVYENEQMVQKSITYVPGLYKIFDEILVNAADNKQRDPKMNSVKVTIDVESNCISVYN 120

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171
           NG G+PVE H +       E+I   L     +D++  + +GG +G G  + N  S E  +
Sbjct: 121 NGDGVPVEIHQE-EGVYVPELIFGHLLTSSNYDDNEKKTTGGRNGYGAKLTNIFSTEFVI 179

Query: 172 TVARQNTIFSQK--FSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKA--GFDAAR 226
             A        K  FS  +         K +     T+ITF+PD   F          A 
Sbjct: 180 ETADGKREKKYKQVFSNNMGTKSEPIISKRQAGDDWTKITFKPDLAKFNMTCLEDDTVAL 239

Query: 227 LLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSE 286
           + K     A   G+        ++   K      + +     + +          +    
Sbjct: 240 MKKRVIDIAGCLGKTVKVELNGQKFHFKSFSSYCDLYMKSTSVSSLDPLPRFEEEVH--- 296

Query: 287 IFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGI-KKY 345
                           +  ++  E   +  S+ N I T +GGTH   +   +T  +    
Sbjct: 297 -------------ERWQIFVSRSEGQFQQVSFVNGIATIKGGTHVDYVTNKITSHLVNVI 343

Query: 346 AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
               +  +   +    +       ++  I  P F  QTK  L    A           F 
Sbjct: 344 KNKNKKNKKFDLKPHTVKNHLWVFVNALIDNPAFDSQTKETLTLRAASFGSSWDFSSNFL 403

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGT 464
             + +     + +++ + E +E + ++  ++   ++   I  L       +     +   
Sbjct: 404 DRVAK-----SDIMKNIEEWAEFKQKKDLKKTDGSKDRRIYGLAKLSDANEAGGRNSDKC 458

Query: 465 ELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
            L + EGDSA   A    +   R +  V PLRGK+LNV  A   ++ +N +I  + Q LG
Sbjct: 459 TLILTEGDSAKALAIAGLSVVGRDHYGVFPLRGKLLNVREASHNQLMHNLEIQHIKQILG 518

Query: 522 CRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK-HLFLISPPL 579
            +   QY     LRY  ++IMTD D DG+HI  LL+ F +     L++    L     P+
Sbjct: 519 LQHGKQYESVKPLRYGHLMIMTDQDHDGSHIKGLLINFIHSFWPSLLKIPSFLLGFITPI 578

Query: 580 FRITQ--GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
            +     G + +  +     +   E      K    +  +KGLG     +  E   D  K
Sbjct: 579 VKARHKDGKRKLSFYTMPQYEAWKEAQGTEAK-NWTVKYYKGLGTSTDQEAMEYFSDLGK 637

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ--ERASFIDDVGT 686
                V ++ + +     + + +K    K + R  +++  E  +F+DD  +
Sbjct: 638 HEKDFVYVDGEDDDA--IELAFSK---KKIEARKGWLRQFEPGTFLDDRDS 683


>gi|2501297|sp|P87078|TOP2_CANAL RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|2113829|emb|CAA71405.1| topoisomerase II [Candida albicans]
          Length = 1461

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 155/745 (20%), Positives = 277/745 (37%), Gaps = 100/745 (13%)

Query: 1   MTDDSIDLFST------LPPQSQGSSEKLKKSGEIPDSPA------------FANQSASD 42
           M++   D F+       +P   + + +      + P   A                +AS+
Sbjct: 1   MSESESDYFTDGSEDDFVPTSKKSTKKNASSKSKQPLGDATNSTVSSSRSSTPKPTNASE 60

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFS 79
            Y     + L  LE +  RP  YIG  +                          L+ +F 
Sbjct: 61  TY-----QKLSQLEHILKRPDTYIGSVEKTKTEMWCFDAETESMVFKEVTIVPGLYKIFD 115

Query: 80  EVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137
           E++ NA D  I       I V +D  N  + V+++G+GIP+E H K  N    E+I   L
Sbjct: 116 EILVNAADNKIRDPSMKNIRVKIDAENNIIEVMNDGKGIPIEMHTK-ENMYIPELIFGNL 174

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
                +D+   +++GG +G G  + N  S +  V  A  N     K S    +S + K +
Sbjct: 175 LTSSNYDDDQKKVTGGRNGFGAKLCNIFSTQFEVETADLNMGKLYKQSWTNNMSNVSKPK 234

Query: 198 KVRNKR---GTRITFRPDPKIFGDKA--GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
               +     T+ITFRPD   F          + L +                +  +   
Sbjct: 235 ITTLRTKKEYTKITFRPDLSKFDMDCLDNDLLSVLRRRVYDLCGTVKNCNIYLNDKRLNI 294

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGK---TEKKGTHRGTVEWAIAWC 309
                       F G ++ Y++   E       +  T K   T          E A A  
Sbjct: 295 S----------SFKGYVEMYVKAIKERSPEPEPQDGTIKNFTTIVHEVFNDRWEVAFAVS 344

Query: 310 EENPEITSYCNTILTDEGGTHESGLRVALTRGIKK-YAELTQNKRAISIISDDLMISAVG 368
           + +    S+ N+I T  GGTH   +   +   + +  ++  + K+ + I   ++  +   
Sbjct: 345 DGSFNQVSFVNSIATTSGGTHVKYVSDQIINKLVETLSKKEKGKKKLMIKPQEVRDNMFL 404

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
            ++  I  P F  QTK +L +  +Q   ++        ++  + +    L   ++++   
Sbjct: 405 FINCLIENPAFTSQTKEQLTTKVSQFGGKD-------KFVANDNLINRILKTSIVDKIRA 457

Query: 429 RLRRRKQREVNRKTAIRKLRLPGKLADCS-----QNIAHGTELFIVEGDSAGGSAKQARN 483
                + + + +    RK R+ G++             H   L + EG SA   A    +
Sbjct: 458 IANANEDKALQKADGSRKSRIKGQVNLVDANKAGTKDGHNCTLILTEGLSAMNLAVAGLS 517

Query: 484 ---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEK 537
              R      PLRGK+LNV  A +++I  N +I  L Q +G + +  Y  E+   LRY  
Sbjct: 518 VVGRDYYGCFPLRGKLLNVREASADQISKNAEINSLKQIIGLQHKKVYTAENIKSLRYGH 577

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQ------GTKSVY 590
           ++IMTD D DG+HI  L++ F       L++    L     P+ ++T       G + + 
Sbjct: 578 IMIMTDQDQDGSHIKGLIINFLETSFPGLLDIPGFLLEFITPIVKVTVKARGAGGKRVIP 637

Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
            +     +   +   K  +       +KGLG     + +E     ++  L R        
Sbjct: 638 FYTMPEFEHWRDTEGKQCR--WTQKYYKGLGTSTPMEAREYFTALDRH-LKRFH-ALQGE 693

Query: 651 SLKDTQDSINKLMGTKADERFKFIQ 675
                  + +K    KADER +++Q
Sbjct: 694 DKDYIDLAFSK---KKADERKEWLQ 715


>gi|170575369|ref|XP_001893211.1| DNA topoisomerase II, alpha isozyme [Brugia malayi]
 gi|158600906|gb|EDP37957.1| DNA topoisomerase II, alpha isozyme, putative [Brugia malayi]
          Length = 1511

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 148/739 (20%), Positives = 268/739 (36%), Gaps = 118/739 (15%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDN----------------- 43
           + DDS  L  + P  S+ +S K  K  E   +   + ++A+++                 
Sbjct: 9   LDDDSFALPPSSPKLSKKTSVKRVKPAEKKKAEKPSAETAAEDPMDVFMDLEKEEKENKG 68

Query: 44  --------YDASSIRILEGLEPVRMRPGMYIGGTD------------------------E 71
                   Y   S      LE + +RP  YIG  +                         
Sbjct: 69  KRLSIEKIYQKKS-----QLEHILLRPDTYIGSVEYTDRTPMWVYDTETDRILQREISYV 123

Query: 72  KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKST 129
             L+ +F E++ NA D        NLI+V+++     +++ +NGRGIPV  H K      
Sbjct: 124 PGLYKIFDEILVNAADNKQRDPKMNLIKVNINKEKNEISIYNNGRGIPVVLH-KIEKLYV 182

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN--TIFSQKFSRG 187
            E+I  TL     +D+S  +++GG +G G  + N  S E  +  +       F Q +   
Sbjct: 183 PELIFGTLLTSSNYDDSERKVTGGRNGYGAKLCNIFSKEFTLETSTNEYGKAFKQTWVNN 242

Query: 188 IPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
           +      K      +  TR+TFRPD       +      A + +     A  +  VK   
Sbjct: 243 MSKDGEPKITTSSKEDFTRVTFRPDLAKFKMTELDDDIVALMCRRAYDIAGSTRGVKVFL 302

Query: 246 SCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
           +  +   +              G K Y++  +++    + E +    E   +     E A
Sbjct: 303 NNKQIPVQ--------------GFKQYIEQYVKHNVDSNGEAYKVVYE---SVSPRWEVA 345

Query: 306 IAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA-ISIISDDLMI 364
           +   ++  +  S+ N+I T +GG H   +   +   +    +    K   I++    +  
Sbjct: 346 LTISDKGFQQVSFTNSIATTKGGRHVDYVVDQIASKLIDVIKKKIGKSGGINVKPFQIKN 405

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
                ++  I  P F  QTK  +            L + F    ++  I    +   V  
Sbjct: 406 HMWIFVNALIENPTFDSQTKETMTLQSKSFGSTCELSEKFIQAAMKCGIVEAIMAWGV-- 463

Query: 425 RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA--- 481
                                         D     +    L + EGDSA   A      
Sbjct: 464 -----------------------PKLEDANDAGTKNSAQCTLILTEGDSAKSLAVSGLGV 500

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR----EEDLRYEK 537
             R    V PLRGK+LNV     ++I  N ++  L++ +G + R +Y      + LRY K
Sbjct: 501 VGRDKYGVFPLRGKMLNVREGNHKQIMENAEVNALLKIIGLQYRLKYDKDEDMKTLRYGK 560

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           V++M D D DG+HI  L++ F +     L+ +  +     P+ + T+G + +        
Sbjct: 561 VMVMADQDQDGSHIKGLVINFIHYNWPALVRRNFVEEFITPIVKATKGKEEISFFSLPEY 620

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           ++ L            I  +KGLG   + + KE  MD  +   ++ + + +    +    
Sbjct: 621 REWLN--NTENWKTYRIKYYKGLGTSTSKEAKEYFMDMRRHR-IQFKYSGE-EDDQALDM 676

Query: 658 SINKLMGTKADERFKFIQE 676
           + +K    K +ER  ++  
Sbjct: 677 AFSK---KKVEERKIWLTN 692


>gi|302202600|gb|ADL09409.1| DNA topoisomerase II [Omphalotus nidiformis]
          Length = 1557

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 155/717 (21%), Positives = 281/717 (39%), Gaps = 67/717 (9%)

Query: 3   DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRP 62
           DD+ D         +              + A   ++AS+ Y     + L  LE +  RP
Sbjct: 81  DDNADESIMDVDAEEDDDLPEMAPAATAPAAAGKKKTASEMY-----QKLSQLEHILKRP 135

Query: 63  GMYIGGTDE-----------------------KALHHLFSEVIDNAMDEVIAGY-ANLIE 98
             YIG  +                             +  E++ NA D  I     + ++
Sbjct: 136 DSYIGSVETITQAMWTYDADTKRMVHREVKYVPGFFKIVDEILVNAADNKINDPSMDTLK 195

Query: 99  VSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           V++D     ++V +NG+GIP+E H +       E+I   L +   +D+   +++GG +G 
Sbjct: 196 VNIDIEENTISVYNNGKGIPIEIHSQ-EKMYIPELIFGHLLSSSNYDDDEKKLTGGRNGY 254

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG---TRITFRPDPK 214
           G    N  S E  V  A +NT    K +    +S   K +  +N RG   TR+TFRPD K
Sbjct: 255 GAKHANIYSHEFTVETADKNTQQKYKQTWTDNMSKCGKPKITKNARGEEWTRVTFRPDLK 314

Query: 215 IFGDKA--GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            FG        A  L K     A     VK   + ++    K     +    +       
Sbjct: 315 RFGMDRIDEDTAGLLRKRVFDMAGTVKDVKVLLNDERL---KIKNFRQYVELYLHSASAE 371

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHES 332
                   +     I   +           E A A  E N    S+ N+I T +GGTH +
Sbjct: 372 AAEHSGGAAQPKPSIIYEQV------NARWEIAFAVSEGNFMHVSFANSIATVKGGTHVN 425

Query: 333 GLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
            +   + +       + +  +  ++ +  +       ++  I  P F  QTK  L    +
Sbjct: 426 LIADQIAK--NLITSIGKKNKGAAVKAGQIRNHMWIFINSLIENPTFDSQTKETLTLPAS 483

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPG 451
           +   +  + + F   + ++P     ++E ++  ++ +  ++ ++   ++++ +  L    
Sbjct: 484 KFGTKPVVSEDFMKKVQKSP-----IVENILNWAKFKADQQIKKTDGSKRSRLTGLPKLA 538

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIR 508
              +     A    L + EGDSA   A        R+N  V PLRGK+L+V  A  ++I 
Sbjct: 539 DANNAGTKTARDCTLILTEGDSAKSLAVAGLGVVGRNNFGVFPLRGKLLSVREARHDQIM 598

Query: 509 NNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
            N++I ++ + +G +    Y     LRY +++IMTD D DG+HI  LL+ F       L+
Sbjct: 599 KNEEIQNIKKIMGLQHNKDYNNVSSLRYGRLMIMTDQDHDGSHIKGLLINFLDHFYPSLL 658

Query: 568 EQK-HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           +    L     P+ R+T+G +          ++ LE     G  K     FKGLG    +
Sbjct: 659 KVPDFLVEFVTPIIRVTKGNQRKDFFTIPEYEQWLETTP--GADKWSTKYFKGLGTSTDA 716

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE--RASFI 681
             +    +  K  +            +  + + +K    KADER +++++    +F+
Sbjct: 717 DARGYFSNMAKHMIPFA--PTQEGDRELIELAFSK---KKADERKEWLRQFKPGTFL 768


>gi|68480866|ref|XP_715586.1| DNA topoisomerase II [Candida albicans SC5314]
 gi|68480977|ref|XP_715530.1| DNA topoisomerase II [Candida albicans SC5314]
 gi|46437155|gb|EAK96506.1| DNA topoisomerase II [Candida albicans SC5314]
 gi|46437215|gb|EAK96565.1| DNA topoisomerase II [Candida albicans SC5314]
          Length = 1461

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 156/745 (20%), Positives = 277/745 (37%), Gaps = 100/745 (13%)

Query: 1   MTDDSIDLFST------LPPQSQGSSEKLKKSGEIPDSPA------------FANQSASD 42
           M++   D F+       +P   + + +      + P   A                +AS+
Sbjct: 1   MSESESDYFTDGSEDDFVPTSKKSTKKNASSKSKQPLGDATNSTVSSSRSSTPKPTNASE 60

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFS 79
            Y     + L  LE +  RP  YIG  +                          L+ +F 
Sbjct: 61  TY-----QKLSQLEHILKRPDTYIGSVEKTKTEMWCFDAETESMVFKEVTIVPGLYKIFD 115

Query: 80  EVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137
           E++ NA D  I       I V +D  N  + V+++G+GIP+E H K  N    E+I   L
Sbjct: 116 EILVNAADNKIRDPSMKNIRVKIDAENNIIEVMNDGKGIPIEMHTK-ENMYIPELIFGNL 174

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
                +D+   +++GG +G G  + N  S +  V  A  N     K S    +S + K +
Sbjct: 175 LTSSNYDDDQKKVTGGRNGFGAKLCNIFSTQFEVETADLNMGKLYKQSWTNNMSNVSKPK 234

Query: 198 KVR---NKRGTRITFRPDPKIFGDKA--GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
                  K  T+ITFRPD   F          + L +                +  +   
Sbjct: 235 ITTLRPKKEYTKITFRPDLSKFDMDCLDNDLLSVLRRRVYDLCGTVKNCNIYLNDKRLNI 294

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGK---TEKKGTHRGTVEWAIAWC 309
                       F G ++ Y++   E       +  T K   T          E A A  
Sbjct: 295 S----------SFKGYVEMYVKAIKERSPEPEPQDGTIKNFTTIVHEVFNDRWEVAFAVS 344

Query: 310 EENPEITSYCNTILTDEGGTHESGLRVALTRGIKK-YAELTQNKRAISIISDDLMISAVG 368
           + +    S+ N+I T  GGTH   +   +   + +  ++  + K+ + I   ++  +   
Sbjct: 345 DGSFNQVSFVNSIATTSGGTHVKYVSDQIINKLVETLSKKEKGKKKLMIKPQEVRDNMFL 404

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
            ++  I  P F  QTK +L +  +Q   ++        ++  + +    L   ++++   
Sbjct: 405 FINCLIENPAFTSQTKEQLTTKVSQFGGKD-------KFVANDNLINRILKTSIVDKIRA 457

Query: 429 RLRRRKQREVNRKTAIRKLRLPGKLADCS-----QNIAHGTELFIVEGDSAGGSAKQARN 483
                + + + +    RK R+ G++             H   L + EG SA   A    +
Sbjct: 458 IANANEDKALQKADGSRKSRIKGQVNLVDANKAGTKDGHNCTLILTEGLSAMNLAVAGLS 517

Query: 484 ---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEK 537
              R      PLRGK+LNV  A +++I  N +I  L Q +G + +  Y  E+   LRY  
Sbjct: 518 VVGRDYYGCFPLRGKLLNVREASADQISKNAEINSLKQIIGLQHKKVYTAENIKSLRYGH 577

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQ------GTKSVY 590
           ++IMTD D DG+HI  L++ F       L++    L     P+ ++T       G + + 
Sbjct: 578 IMIMTDQDQDGSHIKGLIINFLETSFPGLLDIPGFLLEFITPIVKVTVKARGAGGKRVIP 637

Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
            +     +   +   K  +       +KGLG     + +E     ++  L R        
Sbjct: 638 FYTMPEFEHWRDTEGKQCR--WTQKYYKGLGTSTPMEAREYFTALDRH-LKRFH-ALQGE 693

Query: 651 SLKDTQDSINKLMGTKADERFKFIQ 675
                  + +K    KADER +++Q
Sbjct: 694 DKDYIDLAFSK---KKADERKEWLQ 715


>gi|89898785|ref|YP_515895.1| DNA topoisomerase IV subunit B [Chlamydophila felis Fe/C-56]
 gi|89332157|dbj|BAE81750.1| DNA gyrase subunit B [Chlamydophila felis Fe/C-56]
          Length = 602

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 185/647 (28%), Positives = 296/647 (45%), Gaps = 64/647 (9%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTD-----EKALHHLFSEVIDNAMDEVIAGYANLI 97
            Y  +S+  L  LE +R+R GMYIG        E  ++ LF EV+DNA+DE I G+   I
Sbjct: 3   TYTEASVVSLASLEHIRLRAGMYIGRLGDGSQIEDGIYTLFKEVVDNAIDEFIMGHGKTI 62

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            +S +    +TV D+GRGIP+           +   ++ ++ G K+    +  S GL+GV
Sbjct: 63  SISTNAT-TITVRDSGRGIPLGK---------VIDCVSKINTGAKYTQDVFHFSVGLNGV 112

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+  VNALS+   V   R+       F +GI  +  +     ++  GT ITF PD  IF 
Sbjct: 113 GLKAVNALSETFTVRSVRKKQYHYATFCKGILQNSHQ--GSTKDPDGTEITFSPDATIFT 170

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F+   L K  +   YL   ++   + +              F    GL    + ++
Sbjct: 171 NF-SFNDEFLRKKIRRYTYLHPGLEIICNNE-------------VFLSQQGLLDLFKEEV 216

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRV 336
              +L     F             + +     E  N    S+ N   T +GGTH +  + 
Sbjct: 217 PEDTLYPPITF---------QNSELSFLFTHAETHNERYFSFVNGQETIDGGTHLAAFKE 267

Query: 337 ALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           A+ +GI +Y          S  S+D+    +G +++ I  P F  QTK KL +   +  +
Sbjct: 268 AIVKGINEYFG-------KSFASNDIRNGLIGCIAIKIASPIFESQTKNKLGNTQIRPGI 320

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++      L +N   A  LL  +    + R   +  ++  +    +      KL DC
Sbjct: 321 IKDVKSAIIQELKKNKPYADLLLNKIKLNEKTRKNIQFLKQDLKDKQKKLHYKIPKLRDC 380

Query: 457 SQNIAHGT------ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
             +    +       +F+ EG+SA  S   +RN   QAV  LRGK LNV S   EK+  N
Sbjct: 381 KFHYNERSLYGEASSIFVTEGESASASILSSRNPLTQAVFSLRGKPLNVFSLEEEKMYKN 440

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
            ++  L  ALG    S      LRY K+I+ TDADVDG HI +LL+TFF +    ++E +
Sbjct: 441 DELFYLATALGITKNSTQL---LRYNKIILATDADVDGMHIRNLLITFFLKTFLPIVENR 497

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           HLF++  P+F++     ++Y + E+ K   + + +K     +E++RFKGLGE+   + K 
Sbjct: 498 HLFILETPVFKVRYKETTLYCYSEQEKTDAIRKLRKKETA-LEVTRFKGLGEISPKEFK- 555

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           T + A+ R L  V IN    +L+  +  +   MG    ER +FI + 
Sbjct: 556 TFIGADMR-LTPVTIN----ALESVETLLQFYMGKNTKERKQFIMDN 597


>gi|288576045|ref|ZP_05978075.2| DNA topoisomerase IV, B subunit [Neisseria mucosa ATCC 25996]
 gi|288566453|gb|EFC88013.1| DNA topoisomerase IV, B subunit [Neisseria mucosa ATCC 25996]
          Length = 570

 Score =  376 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 200/577 (34%), Positives = 292/577 (50%), Gaps = 34/577 (5%)

Query: 134 LTTLHAGGKFDNS----TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            T LHAGGKF+       Y  SGGLHGVG+SV NALS  L VTV R+  I    F+ G  
Sbjct: 2   FTRLHAGGKFNKKDGGSAYAFSGGLHGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDV 61

Query: 190 LSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
           + PL +  K      GT +   PD K F     +    L ++ ++KA L   V+   +  
Sbjct: 62  VEPLAEVGKCAVKDSGTEVRVWPDGKYFESPN-YSIPELERLLRAKAVLLPGVRVSLT-- 118

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS-----LISSEIFTGKTEKKGTHRGTVE 303
               +     + + +++P GLK+YL   + +              +       +      
Sbjct: 119 -RPVKGEEEAQTQTWHYPDGLKSYLTDLIADAQEAVPLFSCENYISDDHNGDFSIGEGAA 177

Query: 304 WAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDD 361
           +A+ W EE      SY N I T  GGTHE+GL+ A+   +  +  L     R + + SDD
Sbjct: 178 FALTWLEEGSCTNESYVNLIPTPLGGTHEAGLKQAVFNAVNNFINLHNLLPRGVKVQSDD 237

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
           +      +LS  + +P+F GQTK KL + DA + V     DP + +L QN     K+ E 
Sbjct: 238 VFSKTAFVLSARVLDPQFQGQTKDKLTNRDALKLVAAVSGDPLELWLNQNVDYGKKIAEL 297

Query: 422 VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
            I +++ R+R    +++ +K       LPGKL DC        ELF+VEGDSAGGSAK A
Sbjct: 298 AIRQAQARMRSV--KKIEKKKGSGVAVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLA 355

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL---RYEKV 538
           R+++ QA+LPLRGK+LN      +++  N +I D+  A+G          DL   RY K+
Sbjct: 356 RDKATQAILPLRGKVLNSFEVHPDQLFGNAEIHDISVAIGVDPHGINDNPDLSGLRYGKI 415

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT---QGT----KSVYA 591
            I++DADVDG+HI  LLLT FY+    L+   H+++  PPLFR+    QG     +  YA
Sbjct: 416 AILSDADVDGSHIQVLLLTLFYRHFPKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYA 475

Query: 592 HDEEHKQKILEEFKKHGKGK--IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDL 649
            D+     ILE  +K G  +    ISRFKGLGEM   QLK+T M  + R LL+V+I +  
Sbjct: 476 LDQNELDSILERLQKEGVKETAYSISRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGA 535

Query: 650 NSLKDTQDSINKLMGT-KADERFKFIQERASFIDDVG 685
           +   +T+D   KLMG  +A  R  +++      + + 
Sbjct: 536 DD--ETRDIFVKLMGKGEAAVRRAWMEREGDTAE-LD 569


>gi|256083186|ref|XP_002577830.1| DNA topoisomerase II [Schistosoma mansoni]
 gi|238663163|emb|CAZ34068.1| DNA topoisomerase II, putative [Schistosoma mansoni]
          Length = 1599

 Score =  376 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 133/699 (19%), Positives = 262/699 (37%), Gaps = 71/699 (10%)

Query: 14  PQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT---- 69
           PQ  G      ++G   ++      S    Y          LE + +RP  YIG T    
Sbjct: 7   PQPNGDILSSPENGVSGEA-VKKRLSVERIYQKK-----TQLEHILLRPDSYIGSTLKDT 60

Query: 70  -------------------DEKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDG-NGFLT 108
                                  L+ +F E++ NA D  +     + I++ ++     + 
Sbjct: 61  QQMWVLDESQQHMVNRDITFSPGLYKIFDEILVNAADNKVRDPTMSCIKIDINPAENMVR 120

Query: 109 VVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDE 168
           + ++G+GIPV  H K  N     +I   L     +D++  +++GG +G G  + N  S +
Sbjct: 121 IWNDGKGIPV-VHHKVENTYVPTLIFGHLLTSSNYDDTERKVTGGRNGYGAKLCNIFSKK 179

Query: 169 LHVTV--ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA--GFDA 224
             V          F Q +   +  +   K    + +  T ITF PD   FG         
Sbjct: 180 FIVETSSKEYKKSFRQVWVDNMTKTSDPKILADKGEDFTCITFYPDLSRFGMNELEQDTV 239

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
           +   +     A     +K   +  +   +           F   +  +++   ++   + 
Sbjct: 240 SLFTRRAYDMAATCNGIKVFLNGKRLPIKN----------FVDYVNLFIKPNKDDADSVK 289

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKK 344
                             + A+A      +  S+ N+I T +GGTH + +   +   +  
Sbjct: 290 VVYEAV--------NQRWQVAVAVSNTGFQQVSFVNSIATTKGGTHINYVSDQIVNKLMD 341

Query: 345 YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF 404
             +    K  + I    +       ++  I  P F  QTK  + +L  +           
Sbjct: 342 IVKKKSGKSGVQIKPFQIKNHMWLFVNCLIENPTFDSQTKENM-TLQIKSFGSTCTLSEK 400

Query: 405 DHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGT 464
                        +L W+  ++ E++ ++  +  ++ + ++ +       +     +   
Sbjct: 401 FIGQASKSGIVENVLSWIRFKAMEKMDKQCHK--SKHSKLKGIPKLDDANNAGTKNSSQC 458

Query: 465 ELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
            L + EGDSA   A        R N  V PLRGK+LNV  A +++I  N +I  L++ LG
Sbjct: 459 TLILTEGDSAKTLAVAGLGVVGRDNYGVFPLRGKLLNVREASNKQIMENAEINALIKILG 518

Query: 522 CRTRSQYRE----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            + + +Y      +DLRY K++IMTD D DG+HI  L++ F +    +L++   +     
Sbjct: 519 LQYKLKYESADTLKDLRYGKIMIMTDQDQDGSHIKGLIINFVHCNWPNLLKHNVVEEFIT 578

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           P+ ++ +G +    +     ++  +           +  +KGLG   + + KE   D N+
Sbjct: 579 PIVKVFKGKQEHSFYSLPEFEEWQKSTPNWHT--WRVKYYKGLGTSTSKEAKEYFSDMNR 636

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
              +R   +  +      Q + +K   +K  +R  ++  
Sbjct: 637 HR-IRFRYS-GIEDDGSIQLAFDK---SKIADRKNWLTN 670


>gi|213615568|ref|ZP_03371394.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 497

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 200/514 (38%), Positives = 289/514 (56%), Gaps = 22/514 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + VTV R   +++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVTVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ESFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL+ + ++KA L   V+  +  +   +E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLMHVLKAKAVLCPGVEITFKDEVNNSE-------QRWCYQDGLNDYLGEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G    +      V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LPTLPEKPFIGNFNGETE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A +L E  I  ++ RLR    ++V RK       LPGKLADC
Sbjct: 347 SGVVKDAFSLWLNQNVQVAEQLAEMAIASAQRRLR--AAKKVVRKKLTSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
             A+G    S      LRY K+ I+ DAD DG H
Sbjct: 465 SVAIGIDPDSDD-LSQLRYGKICILADADSDGLH 497


>gi|188995458|ref|YP_001929710.1| DNA topoisomerase IV subunit B [Porphyromonas gingivalis ATCC
           33277]
 gi|188595138|dbj|BAG34113.1| DNA topoisomerase IV B subunit [Porphyromonas gingivalis ATCC
           33277]
          Length = 644

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 190/688 (27%), Positives = 297/688 (43%), Gaps = 100/688 (14%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVI 90
             +     Y  S I+ LE  E +R RPGMYIG        +  ++ L  EV+DN++DE +
Sbjct: 3   QEKQLQTEYIESDIKTLEWDEHIRRRPGMYIGKLGDGSHADDGIYVLLKEVLDNSVDEFV 62

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
            G    I++++  NG +TV D GRGIP+           L      ++ GGK D+  ++ 
Sbjct: 63  MGAGKSIDITI-ENGTVTVRDYGRGIPLGK---------LVDATCKMNTGGKIDSKAFKK 112

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           S GL+GVGI  VNALS E  VTV R       ++SR   L             GT + F 
Sbjct: 113 SVGLNGVGIKAVNALSTEFVVTVWRDGQTKRVRYSRAELLEE-TDPVPSGEPSGTEVRFT 171

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PD  +F +   +    ++ M ++  +L+  +   ++  K             F    GL+
Sbjct: 172 PDDSLFRNYR-YQEEFVVSMIKNYTFLNTGLSFFYNGKK-------------FLSRKGLE 217

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGT 329
             L   +   +L      +            +E  +   ++  +    + N   T +GGT
Sbjct: 218 DLLAENMTGDALYPIIHLS---------DTDIEIVVTHTQQYGDEFYSFVNGQNTTQGGT 268

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           H S  R A+ R IK++          +    D+       +S+ + EP F  QTKTKL S
Sbjct: 269 HLSAFREAVARTIKEFYS-------KNFEYSDIRSGMAAAISIKVEEPVFESQTKTKLGS 321

Query: 390 LDA-------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
            D        Q+ V + L+   D YL  +   A ++L  + +   ER       ++ R+ 
Sbjct: 322 RDMGPDGPTIQKFVGDFLKKELDDYLHIHTETAEEMLRKIQQSERERKAMSGITKLARER 381

Query: 443 AIRKLRLPGKLADCSQN-------IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           A +      KL DC+ +           T +FI EG+SA GS    R+ + QAV  LRGK
Sbjct: 382 AKKSNLHNKKLRDCTVHLNDPKAKEPERTSIFITEGNSASGSITTCRDANYQAVFSLRGK 441

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLL 555
            LN      + +  N++   L  AL          + LRY +VII TDAD DG HI  L+
Sbjct: 442 PLNCFGLTKKVVYENEEFNLLQAALNIEEGL----DGLRYNRVIIATDADDDGMHIRLLI 497

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRI---------------TQGTKS-----------V 589
           +TFF Q   DL+ + H++++  PLFR+                +G K            +
Sbjct: 498 ITFFLQFFPDLVRKGHVYVLETPLFRVFLPPESKKQTFGATPKRGRKKQESDMPKPVTDI 557

Query: 590 YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDL 649
           Y + E  KQ  L++  K    K +++RFKGLGE+   Q K+   D     L  V + ++ 
Sbjct: 558 YCYSEAEKQAALKQLGK----KADVTRFKGLGEISPEQFKDLI-DEENIRLEPVSLKRE- 611

Query: 650 NSLKDTQDSINKLMGTKADERFKFIQER 677
                 ++ +   MG    ER +FI + 
Sbjct: 612 ---DKIKELLTFYMGKNTSERQEFIIDN 636


>gi|25006391|dbj|BAC24015.1| DNA topoisomerase II [Epidermophyton floccosum]
          Length = 1091

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 137/673 (20%), Positives = 262/673 (38%), Gaps = 66/673 (9%)

Query: 50  RILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDNAM 86
           + +  LE +  RP  YIG  +                          L+ +F E++ NA 
Sbjct: 2   QKITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAA 61

Query: 87  DEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144
           D        + I V+LD   G ++V +NGRGIPVE H K       E+I   L     ++
Sbjct: 62  DNKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHSK-EQIYIPELIFGHLLTSSNYN 120

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQN--TIFSQKFSRGIPLSPLEKKEKVRNK 202
           +   +++GG +G G  + N  S E  V  A  +    F   ++  +      K  + +  
Sbjct: 121 DMQEKVTGGRNGYGAKLCNIFSKEFTVETADSHEKKKFKLTWTNNMSTMGKAKISENKGD 180

Query: 203 RGTRITFRPDP-KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             T++TF+PD  K   D    D   L+K        +       +  +   + +      
Sbjct: 181 DYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCGTTVKLNGTRIPVKSFKK---- 236

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
             Y     K     + E+ +   ++I T   ++        E      + + +  S+ N+
Sbjct: 237 --YMEMYTKAIKTERGEDPTSDKNDIITESPDR------RWEIGFTVSDGSFQQVSFVNS 288

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
           I T  GGTH + +   +   +   A   +NK   ++ +  +       ++  I  P F  
Sbjct: 289 IATTSGGTHVNYISDQICNKLAD-ALKKKNKTGATLKAAQIKNHIFLFVNSQIVNPAFTS 347

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK +L +  +Q   +  + D F   +++  +        ++  +E++  +  ++    +
Sbjct: 348 QTKEQLTTRPSQFGSKCIVSDDFLRKVMKTRVMDD-----ILHFAEKKADQILKKTDGNR 402

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILN 498
            +                  +   L + EGDSA G A   R         V PLRGK+LN
Sbjct: 403 RSRMNNPKLTDANKAGTKEGYHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLN 462

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLT 557
           V  A  ++I  N +I ++   +G + + +Y +   LRY  ++IMTD D DG+HI  LL+ 
Sbjct: 463 VRDASVDQISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLIN 522

Query: 558 FFYQEMYDLIEQ-KHLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKGK 611
           +       L++    L     P+ ++ +G     T S         ++  +        +
Sbjct: 523 YLQVAFPTLLKIPGFLIEFITPIVKVWKGDPKNPTHSKSFFTLPEYEEWKKTHA--HDKR 580

Query: 612 IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERF 671
            +   +KGLG       +    D ++       +       +  + + +K    KADER 
Sbjct: 581 WQKKYYKGLGTSSTEDAQIYFQDLDRHLKQFHTLQD--KEAELIELAFSK---KKADERK 635

Query: 672 KFIQE--RASFID 682
           +++++    +++D
Sbjct: 636 EWLRQFKPGTYLD 648


>gi|22830795|dbj|BAC15613.1| DNA topoisomerase II [Aspergillus ochraceus]
          Length = 1101

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 143/673 (21%), Positives = 259/673 (38%), Gaps = 66/673 (9%)

Query: 50  RILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDNAM 86
           + L  LE +  RP  YIG T+                          L+ +F E++ NA 
Sbjct: 5   QKLTQLEHIIKRPDTYIGSTERTTQQMWVYNSGTESMEYRDVSFVPGLYKIFDEIVVNAA 64

Query: 87  DEVIAG-YANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144
           D        N + +++D   G ++V +NGRGIP+E H K       E+I   L     +D
Sbjct: 65  DNKHNDAKMNEMRITIDREAGEISVWNNGRGIPIEIHSK-EKIYVPELIFGHLLTSSNYD 123

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK--FSRGIPLSPLEKKEKVRNK 202
           +S  +++GG +G G  + N  S E  +     +     K  ++  +      K    +  
Sbjct: 124 DSQQKVTGGRNGFGAKLCNVFSTEFTLETQDSHQKKKYKQTWTENMTKMGKAKITDAKGD 183

Query: 203 RGTRITFRPDP-KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             T++TF+PD  K   D    D   L+K        +  V    +  +     +      
Sbjct: 184 DYTKVTFKPDFAKFGMDGIDDDFESLVKRRVYDLAGTANVAVKLNGTRVAVRNFRK---- 239

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
             Y     K   + + ++      EI T             E   A  + + +  S+ N+
Sbjct: 240 --YMEMYTKAIRKERGDDGPPSKDEIITCS------PDPRWEIGFAVSDGSFQQVSFVNS 291

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
           I T  GGTH + +   +   +       +NK   ++ S  +       +   I  P F  
Sbjct: 292 IATTSGGTHVNYIADQICTRLAD-QVKKKNKSGATLKSAQIRNHIFIFVKALIVNPAFTS 350

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK +L +  +Q   +  L + F   +++     T+++  ++  +E++  +  ++    +
Sbjct: 351 QTKEQLTTKASQFGSKCPLDEDFYKKVLK-----TEVMSNILHFAEQKADQILKKGDTGR 405

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILN 498
                               H   L + EG+SA G A   R         V PLRGK+LN
Sbjct: 406 RTRMNNPKLVDANKAGTREGHHCTLILTEGESAKGLAMAGRAVVGPDLFGVFPLRGKLLN 465

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLT 557
           V  A  ++I  N +I  +   +G + + +Y E   LRY  ++IMTD D DG+HI  LL+ 
Sbjct: 466 VRDASFDQISKNVEIQSIKNFIGLQHKKEYTETKGLRYGHLMIMTDQDHDGSHIKGLLIN 525

Query: 558 FFYQEMYDLIEQK-HLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKGK 611
           F   +   L++    L     P+ ++ +G     TK           +  E  K   +  
Sbjct: 526 FLQAQFPSLLKIPEFLIEFITPIIKVWKGDPKNPTKQKSFFTMPEHDEWREAHK--HERG 583

Query: 612 IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERF 671
            +   +KGLG       +    D ++       +          + + +K    KADER 
Sbjct: 584 WDHKYYKGLGTSTTEDAQVYFRDLDRHLKEFHTMQDGE--AGLIELAFSK---KKADERK 638

Query: 672 KFIQER--ASFID 682
           +++++    +++D
Sbjct: 639 EWLRQYKPGTYLD 651


>gi|50305715|ref|XP_452818.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641951|emb|CAH01669.1| KLLA0C13838p [Kluyveromyces lactis]
          Length = 1435

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 131/688 (19%), Positives = 246/688 (35%), Gaps = 61/688 (8%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE----------------------- 71
             +++ S+ Y     + +  LE +  RP  YIG  +                        
Sbjct: 2   TQSKTVSERY-----QKISQLEHILKRPDTYIGSVEVQESQQWIHDETTDCMIEKTVNIV 56

Query: 72  KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKST 129
             L  +F E++ NA D  +       I+V ++     + V ++G+GIPVE H K      
Sbjct: 57  PGLFKIFDEILVNAADNKVRDPSMKKIDVVINQEENTIEVKNDGKGIPVEIHDK-EGIYI 115

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ--KFSRG 187
            E+I   L     +D+   +++GG +G G  + N  S E  +  A  +        +   
Sbjct: 116 PELIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADPSRGHKYIQNWENN 175

Query: 188 IPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDK--AGFDAARLLKMTQSKAYLSGRVKTC 244
           +      K    +     T++ F+PD + FG           + +           V   
Sbjct: 176 MSTCHPPKITSYKKGPSYTKVIFKPDLQRFGMDKLDDDIVGVMRRRVYDINGSVRDVNVS 235

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
            +        +    +        +K     +         E     T          E 
Sbjct: 236 LNGKALKIRNFKNYVELYLKSLEKIKLNRLRESSTPDEPMQEPTKIPTILYERINDRWEV 295

Query: 305 AIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMI 364
           A A  E + +  S+ N+I T  GGTH + +   + + +         K+  +I    +  
Sbjct: 296 AFAVSENSFQQISFVNSIATTSGGTHVNYVTDQIIKKVSD----RLKKQKKTIKPFQIKN 351

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           +    ++  I  P F  QTK +L +       +  +   F + +++  +           
Sbjct: 352 NMFIFINCLIENPAFTSQTKEQLTTRVKDFGSKCEVPSEFINKIMKTDLATKIFEIADEN 411

Query: 425 RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA--- 481
             ++  +    R+       +                +   L + EGDSA   A      
Sbjct: 412 AHKQLKKTDGSRKNRITEYPKLEDANMA----GTKEGYKCTLVLTEGDSALSLAVAGLAV 467

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY-REEDLRYEKVII 540
             R      PLRGK+LNV  A  ++I  N +I  + + +G + + +Y     LRY  ++I
Sbjct: 468 VGRDYYGCFPLRGKMLNVREATPDQISKNAEIQAIKKIMGLQHKKRYEDTTTLRYGHIMI 527

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQ---GTKSVYAHDEEH 596
           MTD D DG+HI  L++ F       L++    L     P+ +IT      +++  ++   
Sbjct: 528 MTDQDHDGSHIKGLIINFLESSFPGLLDIPGFLIEFITPIIKITISRPKKETISFYNMPD 587

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            +K  EE  +  K   +   +KGLG     + +E     +K       +  D    +   
Sbjct: 588 YEKWREE--ESHKYTWKQKYYKGLGTSTQQEAREYFSGLDKHLKKFHALQGD--DSQLID 643

Query: 657 DSINKLMGTKADERFKF--IQERASFID 682
            + +K    KAD+R ++  + E  + +D
Sbjct: 644 LAFSK---KKADDRKEWLKLYEPGTVLD 668


>gi|224007445|ref|XP_002292682.1| DNA topoisomerase [Thalassiosira pseudonana CCMP1335]
 gi|220971544|gb|EED89878.1| DNA topoisomerase [Thalassiosira pseudonana CCMP1335]
          Length = 1230

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 162/713 (22%), Positives = 275/713 (38%), Gaps = 77/713 (10%)

Query: 3   DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRP 62
           D S ++     P     +E   K      +   ++++  + Y          LE + +RP
Sbjct: 4   DSSFEIGENYNPNQSSQNETTNKPTAAKKATKKSSKTIEETYQKK-----TQLEHILLRP 58

Query: 63  GMYIGGTDE-----------------------KALHHLFSEVIDNAMDEVIAGY-ANLIE 98
             YIG T+                          L+ +F E++ NA D        + +E
Sbjct: 59  DTYIGSTEPLTQPMFVLNAETNRIAQRDVTYTPGLYKIFDEIVVNAADNKQRDPNMDRME 118

Query: 99  VSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           V++D   G ++V++NG+GIPV  H +  N     +I   L  G  FD+   + +GG +G 
Sbjct: 119 VTVDAESGTISVLNNGKGIPVVMHKEH-NCYVPTLIFGHLLTGSNFDDDEKKTTGGRNGY 177

Query: 158 GISVVNALSDELHVTVARQNTIFSQK--FSRGIPLSPLEKKEKV-----RNKRGTRITFR 210
           G  + N  S E  V     N     K  F   + +    K +K      +    T+ITF+
Sbjct: 178 GAKLANIFSTEFIVECVDSNEGMKFKQVFRNNMHVKEDPKVKKCTAAELKKGDYTKITFK 237

Query: 211 PDPKIFGDK--AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           PD   F            L K     A                        K+   +  G
Sbjct: 238 PDLNRFNMTSLDTDTVGLLSKRAYDIAGSMAN----------------KEGKKLSVYLNG 281

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGG 328
            K  ++      +L          EK G      E  I+  + + +  S+ N I T +GG
Sbjct: 282 KKLPVKDFKSYLALFDGITPPAAYEKVGD---RWEVGISVSDGSFQQISFVNAIATTKGG 338

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            H + +   + + ++  +   +NK    I  + +       ++  +  P F  QTK  L 
Sbjct: 339 GHVNYIADQVAKSLQA-SVKKKNKGGTEIKPNQIKNHLSVFVNCLVENPTFDSQTKENLT 397

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR 448
           +  +    E  L D F    V+       ++ +   +  + L+R+   +  + T I KL 
Sbjct: 398 TRPSAFGKEGQLSDKFMK-QVEKCGVVDAIMSYAKFKQNQALKRKGGTKKTKLTGITKLD 456

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSE 505
                            L I EGDSA   A    +   R    V PL+GK LNV  A   
Sbjct: 457 DANNAGTAKSKD---CTLIITEGDSAKSLAVSGLSVVGRDFYGVFPLKGKPLNVRDATHS 513

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
           +I  N++IM+LV+ +G +  + Y EE+   LRY  ++IM D D DG+HI  L++ F +  
Sbjct: 514 QIMKNEEIMNLVEIMGLKFGTTYTEENIKSLRYGHLMIMADQDHDGSHIKGLIINFIHHF 573

Query: 563 MYDLIEQK-HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
              L++    L     P+ + T+G KS         ++  E      KG   I  +KGLG
Sbjct: 574 WPSLLDIPDFLMQFITPIVKCTKGKKSHTFFTLPEYEEWKEGTGNDAKG-WTIKYYKGLG 632

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
              +S+ KE   + +   +L  + +   +       + +K   +K +ER K++
Sbjct: 633 TSTSSEAKEYFSNLDIHEIL--DNDAITSGAGLIDMAFSK---SKVEERKKWL 680


>gi|46136571|ref|XP_389977.1| hypothetical protein FG09801.1 [Gibberella zeae PH-1]
          Length = 1650

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 158/728 (21%), Positives = 289/728 (39%), Gaps = 73/728 (10%)

Query: 2   TDDSI----DLFSTLPPQ---SQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEG 54
           +D+         S  PP+    +  ++    S E P  PA   ++A++ Y       L  
Sbjct: 59  SDNDDASVASDASNTPPKAKKQKKEADDDSMSIESPAKPA-KQKTATEMYT-----KLTQ 112

Query: 55  LEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDNAMDEVIA 91
           L+ +  RP  YIG  +                          L+ +F E++ NA D    
Sbjct: 113 LQHILKRPDTYIGSVERTEQQLWVLNKETQLMEYKAINFVPGLYKIFDEILVNAADNKQR 172

Query: 92  GY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
                 +++++D   G ++V +NG+GIP+  H K  N    E+I   L AG  FD+   +
Sbjct: 173 DSSMTYMKINIDREAGVISVENNGKGIPIVLHEK-ENIYIPELIFGHLLAGSNFDDDEKK 231

Query: 150 ISGGLHGVGISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
             GG +G G  + N  S E ++          + Q ++  +      K    ++   TRI
Sbjct: 232 TVGGRNGYGAKLCNVFSTEFNLECQDSVSGKKYKQTWTDNMNTMHKAKITASKSASYTRI 291

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
           TF+PD K FG + G D      M +    + G ++           K    +     +  
Sbjct: 292 TFKPDFKRFGMEDGIDDDLESLMYRRVYDMVGTIRGIKVFLNGEQVKIKDFKAYCDLYAK 351

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEG 327
            +      +       + E+       K       E   A  +   +  S+ N+I T  G
Sbjct: 352 SIAKDRLDEEGGSPTCTVEM------DKDKSHPRWEVGFAVSDGTFQQVSFVNSIATTAG 405

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           GTH + +   +T+ +     L + ++  ++  + L       ++ +I  P F+ QTK ++
Sbjct: 406 GTHVNYIADQITKSLLN--TLNKKRKGHTLKQNHLRNHIFVFINCYIDNPAFSSQTKEQM 463

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL 447
            +  +Q   +  L D F   + +     +  ++ +++ +E++  +   +    K +    
Sbjct: 464 TTKASQFGSKCTLGDDFLKKVAK-----SDAIQNILDMAEKKADKMMAKSDGNKRSRVNN 518

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR---NRSNQAVLPLRGKILNVASAGS 504
               +         H   L + EGDSA G A   R   +     V PLRGK+LNV  A  
Sbjct: 519 AKLVEANFAGTRRGHECTLILTEGDSAKGLAVSGRAILDPDRIGVFPLRGKLLNVRDASP 578

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           ++I  NQ+I ++ Q LG + ++ Y +   LRY  ++IM D D DG+HI  LL+ F   + 
Sbjct: 579 DQIAKNQEIQNIKQFLGLKHKTSYTDTKNLRYGHLMIMADQDHDGSHIKGLLINFLEVQF 638

Query: 564 YDLIEQK-HLFLISPPLFRITQG------TKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616
             L+           P+ ++ QG       K      +   ++  ++  K+   +     
Sbjct: 639 PSLLRIPDFFREFITPIVKVWQGPNPKKPQKLKSFFTQPEYEEW-KDVHKNELTRWHSKY 697

Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           FKGLG       +    + +   L   E+ K   S K  + + +K    KAD R +++  
Sbjct: 698 FKGLGTSSNEDAQVYFTNLDDH-LKEFEVMKPEES-KMLELAFSK---KKADARKEWLGN 752

Query: 677 --RASFID 682
               +F+D
Sbjct: 753 FVPGTFLD 760


>gi|3786306|dbj|BAA33955.1| TopoisomeraseII [Candida glabrata]
          Length = 1406

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 137/679 (20%), Positives = 254/679 (37%), Gaps = 61/679 (8%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE----------------------- 71
              ++AS+ Y     + +  LE +  RP  YIG  +                        
Sbjct: 2   SEPKTASERY-----QKISQLEHILKRPDTYIGSVEIQEQEQWIYDEETDCMIDKTVNIV 56

Query: 72  KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKST 129
             L  +F E++ NA D  +       I+V+++    F+ V ++G+GIP+E H K      
Sbjct: 57  PGLFKIFDEILVNAADNKVRDPSMKRIDVTINPEENFIEVRNDGKGIPIEIHEK-EKIYI 115

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR--QNTIFSQKFSRG 187
            E+I   L     +D+   +++GG +G G  + N  S E  +  A       + Q +   
Sbjct: 116 PELIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFTLETADPKNGRKYVQTWENN 175

Query: 188 IPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           + +    K    +     T++ F+PD   F      D+  L  M +    ++G V+    
Sbjct: 176 MNVCHPPKITSYKKVPSYTKVAFKPDLSRF-GMESLDSDILGVMRRRVYDINGSVRDVNV 234

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
                  K    +     +   L+   +          S I T   E+        E A 
Sbjct: 235 YLNGKPLKIRNFKNYVELYLKSLEKMRKMDNGESDTTPSNIPTILYER---VSDRWEIAF 291

Query: 307 AWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISA 366
           A  + + +  S+ N+I T  GGTH + +   + R +    +        +I    +  + 
Sbjct: 292 AVSDISFKQVSFVNSIATTTGGTHVNYIADQIVRKVSDILKKK----KKNIKPYQIKNNM 347

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
              ++  I  P F  QTK +L +          +   + + +++  +            +
Sbjct: 348 FIFINCLIENPAFTSQTKEQLTTRVKDFGSRCDISSDYINKIMKTDLATKIFEIADENAN 407

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RN 483
               +    R+      I                 +   L + EGDSA   A        
Sbjct: 408 NALKKSDGSRKSR----ITDYPKLEDANKAGTKDGYKCTLILTEGDSALSLAVAGLAVVG 463

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMT 542
           R      PLRGK+LNV  A +++I  N +I  + + +G + R +Y +   LRY  ++IMT
Sbjct: 464 RDYYGCYPLRGKMLNVREATADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIMT 523

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQG---TKSVYAHDEEHKQ 598
           D D DG+HI  L++ F       L++    L     P+ ++T      K +   +    +
Sbjct: 524 DQDHDGSHIKGLIINFIETSFPGLLDIPGFLIEFITPIVKVTITKPIKKVISFFNLPDYE 583

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           K  EE  +  K   +   +KGLG   + ++ E   + +        +  D   L     +
Sbjct: 584 KWREE--ESHKYSWKQKYYKGLGTSTSPEIIEYFSNLDTHLKKFHALQGDDKDL--IDLA 639

Query: 659 INKLMGTKADERFKFIQER 677
            +K    KAD+R +++++ 
Sbjct: 640 FSK---KKADDRKEWLRQY 655


>gi|50291033|ref|XP_447949.1| hypothetical protein [Candida glabrata CBS 138]
 gi|51338747|sp|O93794|TOP2_CANGA RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|49527260|emb|CAG60900.1| unnamed protein product [Candida glabrata]
          Length = 1406

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 137/679 (20%), Positives = 254/679 (37%), Gaps = 61/679 (8%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE----------------------- 71
              ++AS+ Y     + +  LE +  RP  YIG  +                        
Sbjct: 2   SEPKTASERY-----QKISQLEHILKRPDTYIGSVEIQEQEQWIYDEETDCMIDKTVNIV 56

Query: 72  KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKST 129
             L  +F E++ NA D  +       I+V+++    F+ V ++G+GIP+E H K      
Sbjct: 57  PGLFKIFDEILVNAADNKVRDPSMKRIDVTINPEENFIEVRNDGKGIPIEIHEK-EKIYI 115

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR--QNTIFSQKFSRG 187
            E+I   L     +D+   +++GG +G G  + N  S E  +  A       + Q +   
Sbjct: 116 PELIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFTLETADPKNGRKYVQTWENN 175

Query: 188 IPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           + +    K    +     T++ F+PD   F      D+  L  M +    ++G V+    
Sbjct: 176 MNVCHPPKITSYKKGPSYTKVAFKPDLSRF-GMESLDSDILGVMRRRVYDINGSVRDVNV 234

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
                  K    +     +   L+   +          S I T   E+        E A 
Sbjct: 235 YLNGKPLKIRNFKNYVELYLKSLEKMRKMDNGESDTTPSNIPTILYER---VSDRWEIAF 291

Query: 307 AWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISA 366
           A  + + +  S+ N+I T  GGTH + +   + R +    +        +I    +  + 
Sbjct: 292 AVSDISFKQVSFVNSIATTTGGTHVNYIADQIVRKVSDILKKK----KKNIKPYQIKNNM 347

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
              ++  I  P F  QTK +L +          +   + + +++  +            +
Sbjct: 348 FIFINCLIENPAFTSQTKEQLTTRVKDFGSRCDISSDYINKIMKTDLATKIFEIADENAN 407

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RN 483
               +    R+      I                 +   L + EGDSA   A        
Sbjct: 408 NALKKSDGSRKSR----ITDYPKLEDANKAGTKDGYKCTLILTEGDSALSLAVAGLAVVG 463

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMT 542
           R      PLRGK+LNV  A +++I  N +I  + + +G + R +Y +   LRY  ++IMT
Sbjct: 464 RDYYGCYPLRGKMLNVREATADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIMT 523

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQG---TKSVYAHDEEHKQ 598
           D D DG+HI  L++ F       L++    L     P+ ++T      K +   +    +
Sbjct: 524 DQDHDGSHIKGLIINFIETSFPGLLDIPGFLIEFITPIVKVTITKPIKKVISFFNLPDYE 583

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           K  EE  +  K   +   +KGLG   + ++ E   + +        +  D   L     +
Sbjct: 584 KWREE--ESHKYSWKQKYYKGLGTSTSPEIIEYFSNLDTHLKKFHALQGDDKDL--IDLA 639

Query: 659 INKLMGTKADERFKFIQER 677
            +K    KAD+R +++++ 
Sbjct: 640 FSK---KKADDRKEWLRQY 655


>gi|154297045|ref|XP_001548951.1| hypothetical protein BC1G_12611 [Botryotinia fuckeliana B05.10]
 gi|150843138|gb|EDN18331.1| hypothetical protein BC1G_12611 [Botryotinia fuckeliana B05.10]
          Length = 1823

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 143/740 (19%), Positives = 271/740 (36%), Gaps = 87/740 (11%)

Query: 2   TDDSIDLFSTLPPQSQGSSEKLKKSGEIPDS--------------PAFANQSASDNYDAS 47
           + +     S+ PP ++   +      +  ++                   +++++ Y   
Sbjct: 95  SANDASQLSSTPPNAKKQKKAPAAKRQATEALHDIENESILEIEPKPKKTKTSTEQY--- 151

Query: 48  SIRILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDN 84
             + L  LE +  RP  YIG  +                          L+ +F E++ N
Sbjct: 152 --QKLTQLEHIIKRPDTYIGSVEKTEQTMWVFNSENKEMELRKVTFVPGLYKIFDEIMVN 209

Query: 85  AMDEVIAG-YANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142
           A D          I+V +D   G ++V ++GRGIPVE H K       E+I   L  G  
Sbjct: 210 AADNKQNDANMKNIKVVVDREKGEISVENDGRGIPVEIHEK-EKIYIPEMIFGHLLTGSN 268

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQN--TIFSQKFSRGIPLSPLEKKEKVR 200
           +D+   + +GG +G G  + N  S E  +     N    + Q ++  +      +    +
Sbjct: 269 YDDDEAKTTGGRNGYGAKLCNIFSTEFTLETQDSNSGKRYKQTWTDNMSKMGKARISSSK 328

Query: 201 NKRGTRITFRPDPKIFGD--KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
           N   TR+TF PD   F          A + +     A     VK   +  +   +     
Sbjct: 329 NADFTRVTFTPDWTKFKMTGIDDDFEAMVKRRVYDMAGTVKGVKVYLNGAQIKLD----- 383

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSY 318
                 F   ++ Y +   + R L  +   +   E         E   A  + + +  S+
Sbjct: 384 ------FKKYIEMYAKAINKERGLDDASANSVIVE-DSKGHPKWEVGFAVSDGSFQQVSF 436

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPE 378
            N+I T  GGTH + +   +   + +     +N +   + ++ +       ++  I  P 
Sbjct: 437 VNSIATTSGGTHVNYIADQICDKLLE-VVKKRNPKGALLKANQVRNHIFLFVNCLITNPA 495

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
           F  QTK +L +   Q   +  L + F   + +     T+ +E ++  + ++      +  
Sbjct: 496 FTSQTKEQLTTRKPQFGSKCVLTEEFLKKIGK-----TEAVENILNFAAKKADLELAKSD 550

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR---NRSNQAVLPLRGK 495
             + +                  H   L + EGDSA G A   R   +     V PLRGK
Sbjct: 551 GNRRSRMNNPKLVDANLAGTKRGHECTLILTEGDSAKGLAVAGRAVLDPDRIGVFPLRGK 610

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDADVDGAHIASL 554
           +LNV  A  ++I  N +I ++ Q LG + ++ Y++   LRY  ++IM D D DG+HI  L
Sbjct: 611 LLNVRDASHDQIAKNAEIQNIKQFLGLKHKTTYKDTLGLRYGHLMIMADQDHDGSHIKGL 670

Query: 555 LLTFFYQEMYDLIEQK-HLFLISPPLFRITQG------TKSVYAHDEEHKQKILEEFKKH 607
           L+ F   +   L++          P+ ++ +G      T           ++  E    +
Sbjct: 671 LINFLQVQYPSLLKLPEFFREFITPIVKVWKGPNPNKPTNLRSFFTMPEYEEWKES--NN 728

Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667
                +   +KGLG       +    + +        I  +    +    + +K    KA
Sbjct: 729 NDKSWKHKYYKGLGTSKPEDAQIYFSNLDVHLREFETIKPEEE--EMLDLAFSK---KKA 783

Query: 668 DERFKFIQE--RASFIDDVG 685
           D R  ++      +++D   
Sbjct: 784 DSRKTWLGNFIPGTYLDHTD 803


>gi|298372413|ref|ZP_06982403.1| DNA gyrase subunit B [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275317|gb|EFI16868.1| DNA gyrase subunit B [Bacteroidetes oral taxon 274 str. F0058]
          Length = 623

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 190/653 (29%), Positives = 292/653 (44%), Gaps = 78/653 (11%)

Query: 49  IRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           I  LEGL+ VR RPGMYIG      + +  ++ L  EVIDN++DE   G+   I+++L  
Sbjct: 19  IVHLEGLKHVRKRPGMYIGKLGDGSSPDDGIYVLIKEVIDNSIDEFRNGFGATIDITL-E 77

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +  + V D GRGI  E+  K          ++ ++  GK+ +S Y+ S GL+GVG   VN
Sbjct: 78  DNTVRVRDYGRGISQESMIK---------AVSVMNTSGKYTSSGYKKSVGLNGVGTKAVN 128

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI-FGDKAGF 222
           ALS+   +   R+ T+ S  F +G+ +      E    K GT + F+PD          +
Sbjct: 129 ALSERFIIRSYREGTVKSAVFEKGVLVEE-TPAEATAEKSGTEVIFKPDNDADIFGNFAY 187

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               ++ M ++  YL+  +   ++  K                  GL   L   + +  L
Sbjct: 188 REEFVVSMIKNYCYLNMGLTIDFNGSK-------------MTSQNGLLDLLDENITSDPL 234

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
                  G+          +E       +   E  S+ N   T +GGTH+S  R    + 
Sbjct: 235 YPIVHLKGE---------DIEIVFTHTNQYGEEYYSFVNGQHTIQGGTHQSAFREYFGKS 285

Query: 342 IKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV------SLDAQRT 395
           I+ +          ++   D+ +  V  +SV +++P F  QTK KL       +     T
Sbjct: 286 IRDFYG-------KNMEYADIRMGLVAAISVSLQDPVFESQTKIKLGSTKVDPNDPNSMT 338

Query: 396 VENALRDPFDH----YLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           V+  + D        YL  N   A  L + + E  +ER       +V RK A +      
Sbjct: 339 VQKFIGDFVVKEIDRYLHINHDVAEILQKKIQESEKERKAIASVTKVARKNAQKVSLHNK 398

Query: 452 KLADCSQNIA-------HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
           KL DC  +         + T LFI EGDSA GS  + R+ + QAV  LRGK LN  +   
Sbjct: 399 KLRDCRIHFNDTKSDSKNDTCLFITEGDSASGSITKTRDPNLQAVFSLRGKSLNSFNKTK 458

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           + +  N ++  L  AL          E LRY K+II TDAD DG HI SLL+TFF Q   
Sbjct: 459 QIVYTNVELNLLQAALNVE----DGIEGLRYNKIIIATDADPDGMHIRSLLMTFFLQFFP 514

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
           DLI++ H++++  PLFR+    +++Y + EE +++ L +   +     EI+RFKGLGE+ 
Sbjct: 515 DLIKKGHIYILQTPLFRVRNKKETLYCYSEEERKQALSKLGAN----PEITRFKGLGEID 570

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
             + K          L +V + K+        D +   MG    ER  FI   
Sbjct: 571 PDEFKTFIG--KNMRLDKVTLRKE----DAVSDMLKFYMGKNTQERQDFIVNN 617


>gi|50551479|ref|XP_503213.1| YALI0D23969p [Yarrowia lipolytica]
 gi|49649081|emb|CAG81413.1| YALI0D23969p [Yarrowia lipolytica]
          Length = 1537

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 146/701 (20%), Positives = 271/701 (38%), Gaps = 70/701 (9%)

Query: 17  QGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD------ 70
           Q  +           +P     SAS+ Y     + L  LE +  RP  YIG  +      
Sbjct: 80  QEVANDNAPVPSPKGTPKGKKGSASEQY-----QKLTQLEHILKRPDTYIGSVEATASPM 134

Query: 71  -----------------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVD 111
                               L+ +F E++ NA D  I     + +EV++D +   ++V++
Sbjct: 135 WVWNQTTSALEHKMVTIVPGLYKIFDEILVNAADNKIRDPKMDSLEVTIDADKNEISVMN 194

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171
           NG+GIPVE H K       E+I   L     ++++  ++ GG +G G  + N  S E  +
Sbjct: 195 NGKGIPVEIHDK-EKIYIPELIFGNLLTSSNYNDNEKKVVGGRNGFGAKLCNIFSTEFKL 253

Query: 172 TVAR--QNTIFSQKFSRGIPLSPLEKKEK-VRNKRGTRITFRPDPKIFGDK--AGFDAAR 226
             A      I++Q +S  +      K ++    K  T++TF+PD K+F            
Sbjct: 254 ETADQKNGKIYTQTWSNNMSKVDKPKIKELKTKKEYTKVTFKPDLKLFNMTELDADTVGV 313

Query: 227 LLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSE 286
           L++     A  +  VK   +  +   +           F   +  YL++ + +      +
Sbjct: 314 LMRRVYDIAGTTHGVKVKLNGTRLALKD----------FKAYVDLYLKSLVADEDNEVVQ 363

Query: 287 IFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYA 346
                 E         E A A  +   +  S+ N+I T  GGTH + +   L   +    
Sbjct: 364 KSKIVHE---IVNDRWEVAFAVSDGTYQNVSFVNSIATTSGGTHVNYIADQLVAKLTA-- 418

Query: 347 ELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
              +  +   +    L  +    ++  I  P F  QTK ++ +  +    +  L D F  
Sbjct: 419 TAKKKLKDAQVKPAQLKANMFIFINCLIENPAFTSQTKEQMTTKVSAFGSKCELSDKFIK 478

Query: 407 YLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
            +  N     ++L      ++  L++       ++          +LA   +       L
Sbjct: 479 QVTNNTDIMERVLSIAGRNADAALKKTDGSSKKKRITTLVKLEDAQLAGTKRGHE--CTL 536

Query: 467 FIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523
            + EGDSA   A        R      PLRGK+LNV  A +++I  N +I  + + +G +
Sbjct: 537 ILTEGDSAMTMANAGLSVIGRERYGAFPLRGKMLNVREASTDQIMKNAEIQAIKEIIGLQ 596

Query: 524 TRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFR 581
            +  Y   +DLRY  ++IMTD D DG+HI  L++ F       L++    L     P+ +
Sbjct: 597 HKKHYTSCKDLRYGHLMIMTDQDHDGSHIKGLIINFLETMFPGLLQIPGFLLEFITPIVK 656

Query: 582 --ITQGT---KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
             + +G    K++  ++    +   +   +          FKGLG    +   E   D +
Sbjct: 657 VMVMRGKKVVKTIPFYNMPEYEAWRDFEGQQCT--WTSKYFKGLGTTPTADATEYFKDLD 714

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           +  + +             + + +K    KAD+R +++++ 
Sbjct: 715 RH-MKQFHAVTA-EDRPFIELAFSK---KKADDRKEWLRKY 750


>gi|288800666|ref|ZP_06406123.1| DNA gyrase subunit B (Topoisomerase II subunit B) [Prevotella sp.
           oral taxon 299 str. F0039]
 gi|288332127|gb|EFC70608.1| DNA gyrase subunit B (Topoisomerase II subunit B) [Prevotella sp.
           oral taxon 299 str. F0039]
          Length = 645

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 186/686 (27%), Positives = 294/686 (42%), Gaps = 101/686 (14%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           Y   +IR L  +E VR RPGMYIG        E  ++ L  EV+DN++DE        IE
Sbjct: 7   YTDDNIRHLSDMEHVRTRPGMYIGRLGDGSLPEDGIYVLLKEVVDNSIDEFKMNAGRRIE 66

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           + +  N  ++V D GRGIP     +          ++ L+ GGK+D+  ++ S GL+GVG
Sbjct: 67  IDITENASVSVRDYGRGIPQGKLIE---------AVSVLNTGGKYDSKAFKKSVGLNGVG 117

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           I  VNALS    V   R   + +  F RGI  S   K  K  ++ GT I F PD ++F +
Sbjct: 118 IKAVNALSKRFEVRSYRDGKVRTAIFERGILQSD--KTTKTTDENGTFIFFEPDNQLFLN 175

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    +  M ++  YL+  +   ++  + +                GL   L   + 
Sbjct: 176 YR-FHDDIIETMLRNYTYLNTGLAIMYNGRRIM-------------SRNGLADLLTDTMT 221

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVA 337
              L       G+          +E A     +  E    + N   T +GGTH++  +  
Sbjct: 222 TDGLYPIIHIIGE---------DIEIAFTHTNQYGEEYHSFVNGQHTTQGGTHQTAFKEH 272

Query: 338 LTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR--- 394
           + + IK+++         +    D+    V  +++ + EP F  QTK KL S        
Sbjct: 273 IAKTIKEFSG-------KNFEYGDIRNGLVAAIAINVEEPMFESQTKIKLGSTTMSPNDG 325

Query: 395 -----TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
                 + + ++   D+YL ++   A  +L  + E   ER       ++ R+ A +    
Sbjct: 326 VSINKYIGDFVKTEVDNYLHKHADIAETMLAKIQESERERKSMAGVTKLARERAKKANLH 385

Query: 450 PGKLADCSQNIAH-------GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
             KL DC  + +         + +FI EGDSA GS  ++R+ + QAV  LRGK LN    
Sbjct: 386 NRKLRDCRIHYSDGKNNDKEKSCIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSFGL 445

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
             + +  N++   L  AL          + LRY KVI+ TDADVDG HI  L++TFF Q 
Sbjct: 446 TKKVVYENEEFNLLQAALDIEEGL----DSLRYNKVIVATDADVDGMHIRLLIITFFLQF 501

Query: 563 MYDLIEQKHLFLISPPLFRITQGTK-------------------------SVYAHDEEHK 597
             +LI++ H++++  PLFR+                              + Y + EE +
Sbjct: 502 FPELIKKGHVYVLQTPLFRVRNKKTKIKNKAVLEENGNKQKQGDKKNDFITRYCYTEEER 561

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
            K ++E         EI+RFKGLGE+   +     +    R L +V ++K        Q 
Sbjct: 562 IKAIDELG----PSPEITRFKGLGEISPDEFVH-FIGPEMR-LEQVTLHK----TDQVQK 611

Query: 658 SINKLMGTKADERFKFIQERASFIDD 683
            +   MG    ER  FI +     +D
Sbjct: 612 LLEYYMGKNTMERQNFIIDNLLVEED 637


>gi|225165844|ref|ZP_03727622.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Opitutaceae bacterium TAV2]
 gi|224799915|gb|EEG18366.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Opitutaceae bacterium TAV2]
          Length = 617

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 202/665 (30%), Positives = 294/665 (44%), Gaps = 75/665 (11%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYAN 95
           + +Y  SSI+ L  LE +R+RPGMYIG        E  ++ L  E IDN++DE   G+  
Sbjct: 2   AADYTESSIKTLSPLEHIRLRPGMYIGRLGNGSHAEDGIYVLLKETIDNSIDEFTMGHGK 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            IEV LD +  LTV D GRGIP+           L   ++ ++ G K+D+ T++ + GL+
Sbjct: 62  KIEVYLD-DRTLTVRDYGRGIPLGK---------LIDCVSIINTGAKYDSETFQKAVGLN 111

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG   VNALS        R       +F  G  +   + +     + GT I F PDP  
Sbjct: 112 GVGQKAVNALSLSYRAEAIRDGQCKIAEFRCGKLVKDNKPQ-PTTERNGTIIEFTPDPDE 170

Query: 216 FGDKAGFDA--ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
                 F      + +M  + AYL+  +   ++                F    GLK  L
Sbjct: 171 KLFGTEFRFRTEYIEEMLWNYAYLNRGLTLYFNGK-------------PFRSENGLKDLL 217

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
             KL    L                   +E A+   E    E  S+ N   T  GGTH +
Sbjct: 218 TKKLTGEPLYPMSH---------IEAPDIEVALTHGEHYGEEYYSFVNGQHTTMGGTHLA 268

Query: 333 GLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
             R  L   ++ +      K+     + D+  S +  +S+ ++EP F  QTKTKL S D 
Sbjct: 269 AFREGLVATLRNFF-----KK--DYEAADVRQSIIAAVSIRVQEPVFESQTKTKLGSSDM 321

Query: 393 -------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIR 445
                  ++ +   L+   D++L +NP  A  +   +     ER      R + ++ A +
Sbjct: 322 GPKGPSVRQFITQFLQQNLDNWLHRNPEAAEAIKRKIEASERERKELSGIRSLAKERAKK 381

Query: 446 KLRLPGKLADCSQN------IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
                 KL DC  +       A  + +FIVEGDSA GS    R+   QAV  L+GK LN 
Sbjct: 382 ASLHNKKLRDCRVHLDSKDKRAEESSIFIVEGDSAAGSLTACRDVQTQAVFALKGKPLNT 441

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
                + I  N++   L  AL          E+LRY KVII TDADVDG HI  LLL+FF
Sbjct: 442 FGLTKKIIYENEEFHLLQSALNIE----EGIENLRYNKVIIATDADVDGMHIRLLLLSFF 497

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
            Q   DLI   H+ ++  PLFR+    +++Y + E  KQ  L +  ++     EI+RFKG
Sbjct: 498 LQFFPDLITNGHVSILETPLFRVRNKKQTIYCYSEAEKQSALHKLGQNA----EITRFKG 553

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679
           LGE+  S+ K+   D     L  V +    NS     + +   MG    +R  FI E   
Sbjct: 554 LGEVSPSEFKDFISD--NIRLEPVSLAHLYNSA----ELLTFYMGKNTPKRQDFIIENLR 607

Query: 680 FIDDV 684
              D+
Sbjct: 608 VEKDL 612


>gi|38453799|dbj|BAD02200.1| DNA topoisomerase II [Arthroderma obtusum]
          Length = 1086

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 139/672 (20%), Positives = 259/672 (38%), Gaps = 66/672 (9%)

Query: 51  ILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDNAMD 87
            +  LE +  RP  YIG  +                          L+ +F E++ NA D
Sbjct: 1   KITQLEHILKRPDTYIGSVERTEKHMWVYNSTTELMEYREVSFVPGLYKIFDEILVNAAD 60

Query: 88  EVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
                   + I V+LD   G ++V +NG GIPVE H K       E+I   L     +++
Sbjct: 61  NKQNDPNMSEIRVTLDKEAGEISVWNNGHGIPVEIHKK-EQIYIPELIFGHLLTSSNYND 119

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
              +++GG +G G  + N  S+E  V  A       F   +   +      K  + +   
Sbjct: 120 MQEKVTGGRNGYGAKLCNIFSNEFTVETADSSNKKKFKLTWMNNMSTMGKAKITESKGDD 179

Query: 204 GTRITFRPDP-KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            T++TF+PD  K   D    D   L+K        +       +  +   + +       
Sbjct: 180 YTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCGTTVKLNGTRIPVKSFKK----- 234

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
            Y     K     + E+ +   ++I T   ++        E      + + +  S+ N+I
Sbjct: 235 -YMEMYTKAIKTERGEDPTSDKNDIITESPDR------RWEIGFTVSDGSFQQVSFVNSI 287

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T  GGTH + +   +   +   A   +NK   ++ +  +       ++  I  P F  Q
Sbjct: 288 ATTSGGTHVNYISDQICNKLAD-ALKKKNKTGATLKAAQIKNHIFLFVNSQIVNPAFTSQ 346

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK +L +  +Q   +  + D F   +++  +        ++  +E++  +  ++    + 
Sbjct: 347 TKEQLTTRPSQFGSKCIVSDEFLKKVMKTRVMDD-----ILHFAEKKADQILKKTDGNRR 401

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNV 499
           +                  H   L + EGDSA G A   R         V PLRGK+LNV
Sbjct: 402 SRMNNPKLTDANKAGTKEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNV 461

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTF 558
             A  ++I  N +I ++   +G + + +Y +   LRY  ++IMTD D DG+HI  LL+ +
Sbjct: 462 RDASVDQISKNAEIQNIKNFIGLQHKKEYTDTRGLRYGHLMIMTDQDHDGSHIKGLLINY 521

Query: 559 FYQEMYDLIEQ-KHLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKGKI 612
                  L++    L     P+ ++ +G     T S         ++  E        K 
Sbjct: 522 LQVAFPTLLKIPGFLIEFITPIVKVWKGDPKNPTHSKSFFTLPEYEEWKEAHA--HDKKW 579

Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
           +   +KGLG       +    D ++       +       +  + + +K    KADER +
Sbjct: 580 QKKYYKGLGTSSTEDAQIYFQDLDRHLKQFHTLQD--KEAELIELAFSK---KKADERKE 634

Query: 673 FIQE--RASFID 682
           ++++    +++D
Sbjct: 635 WLRQFKPGTYLD 646


>gi|194383172|dbj|BAG59142.1| unnamed protein product [Homo sapiens]
          Length = 1178

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 131/621 (21%), Positives = 241/621 (38%), Gaps = 42/621 (6%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPN 126
           T    L+ +F E++ NA D          I+VS+D     +++ +NG+GIPV  H K   
Sbjct: 16  TFVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEH-KVEK 74

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK--F 184
                +I   L     +D+   +++GG +G G  + N  S +  V  A +    S K  +
Sbjct: 75  VYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTW 134

Query: 185 SRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
              +  +   K +    +  T ITF+PD              A + +     A     VK
Sbjct: 135 MNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKDIVALMTRRAYDLAGSCRGVK 194

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
             ++  K                  G ++Y+   ++++   +        E         
Sbjct: 195 VMFNGKKLPV--------------NGFRSYVGLYVKDKLDETGVALKVIHEL---ANERW 237

Query: 303 EWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDL 362
           +  +   E+  +  S+ N+I T +GG H   +   +   + +     +NK  +S+    +
Sbjct: 238 DVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIE-VVKKKNKAGVSVKPFQV 296

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
                  ++  I  P F  QTK  +         +  L + F      N      +L WV
Sbjct: 297 KNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKCQLSEKFFK-AASNCGIVESILNWV 355

Query: 423 IERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA- 481
             +++   +  K+    + + I+ +       D     +    L + EGDSA   A    
Sbjct: 356 KFKAQ--TQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGL 413

Query: 482 --RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED----LRY 535
               R    V PLRGKILNV  A  ++I  N +I ++++ +G R +  Y + +    LRY
Sbjct: 414 GVIGRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLRYKKSYDDAESLKTLRY 473

Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEE 595
            K++IMTD D DG+HI  LL+ F +     L++   L     P+ + ++  + +  +   
Sbjct: 474 GKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIP 533

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
              +  +      +   +I  +KGLG   A + KE   D  +  +L              
Sbjct: 534 EFDEWKKHI--ENQKAWKIKYYKGLGTSTAKEAKEYFADMERHRILF--RYAGPEDDAAI 589

Query: 656 QDSINKLMGTKADERFKFIQE 676
             + +K    K D+R +++  
Sbjct: 590 TLAFSK---KKIDDRKEWLTN 607


>gi|224055129|ref|XP_002298421.1| predicted protein [Populus trichocarpa]
 gi|222845679|gb|EEE83226.1| predicted protein [Populus trichocarpa]
          Length = 1468

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 142/701 (20%), Positives = 259/701 (36%), Gaps = 86/701 (12%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGG---------------------TDEKA 73
              ++  + Y   S      LE + +RP  YIG                      T    
Sbjct: 2   NQGKTIEETYQKKS-----QLEHILLRPDTYIGSIEKHAQTLWVYEGDKIVHRPVTYVPG 56

Query: 74  LHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLE 131
           L+ +F E++ NA D        + ++V +D  N  ++V +NG G+PVE H K       E
Sbjct: 57  LYKIFDEILVNAADNKQRDPKMDSLKVVIDGENNLVSVYNNGDGVPVEIH-KEEGVYVPE 115

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK--FSRGIP 189
           +I   L     +D++  + +GG +G G  + N  S E  +  A        K  FS  + 
Sbjct: 116 LIFGHLLTSSNYDDAEKKTTGGRNGYGAKLTNIFSTEFVIETADGKRQKKYKQVFSNNMG 175

Query: 190 LSPLEKKEKVRN-KRGTRITFRPDPKIFGDKA--GFDAARLLKMTQSKAYLSGRVKTCWS 246
                   K +  +  T++TF+ D   F          A + K     A   G+      
Sbjct: 176 KKSEPMITKCKEGENWTKVTFKADLAKFSMTHLEEDVVALMKKRVVDIAGCLGKTVKVEL 235

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
               +  K               + Y+   L + S   SE       +K   R   E  +
Sbjct: 236 NGSRVPVKSF-------------QDYVYMYLNSASEPGSERPKRFFYEKVGERW--EVCV 280

Query: 307 AWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISA 366
           +  E   +  S+ N+I T +GGTH   +   +T  +     + +  +  +I + ++    
Sbjct: 281 SLTEGQFQQVSFVNSIATIKGGTHVDYVTNQITNYVMN--AVNKKHKNSNIKAHNVKNYL 338

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
              ++  I  P F  QTK  L    +    +  L + F   + +     + +++ ++  +
Sbjct: 339 WVFVNCLIDNPAFDSQTKETLTLRQSSFGSKCELSEDFLKKVAK-----SDIVDNLLSWA 393

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR---- 482
           + +  +  ++    KTA   +       +     +    L + EGDSA   A        
Sbjct: 394 KFKESKELKKTDGTKTAKVNVPKLEDANEAGGRYSEKCTLILTEGDSAKALAVTGVAGLT 453

Query: 483 --NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVI 539
              RS   V PLRGK+LNV  A  ++++ N++I  + + LG +   QY     LRY  ++
Sbjct: 454 QTERSFYGVFPLRGKLLNVREATPKQLKENKEIECIKKILGLQHHKQYSNVKSLRYGHLM 513

Query: 540 IMTD-------------ADVDGAHIASLLLTFFYQEMYDLIEQK-HLFLISPPLFRIT-Q 584
           IMTD              D DG+HI  LL+ F +     L++    L     P+ + T +
Sbjct: 514 IMTDQAKERFANFLCFKQDHDGSHIKGLLINFLHSFWPSLLKVPSFLVEFITPIVKATHR 573

Query: 585 GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644
               +  +     +        +      I  +KGLG   + + K      +K    +  
Sbjct: 574 NGTVLSFYSMPEYESWKGSLAGNA-SGWSIKYYKGLGTSTSKEGKAYFQSLDKH--KKDF 630

Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQER--ASFIDD 683
           I  D       + + +K    K + R  ++++    + +D 
Sbjct: 631 IWMDEQDGDAIELAFSK---KKIEARKNWLRQYEPGTHLDQ 668


>gi|323343732|ref|ZP_08083959.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella oralis
           ATCC 33269]
 gi|323095551|gb|EFZ38125.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella oralis
           ATCC 33269]
          Length = 657

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 191/687 (27%), Positives = 295/687 (42%), Gaps = 100/687 (14%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +Y   +IR L  +E VR RPGMYIG        E  ++ L  EVIDN++DE        I
Sbjct: 17  SYTDENIRHLSDMEHVRTRPGMYIGRLGDGSLPEDGIYVLLKEVIDNSIDEFKMNAGKRI 76

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           E+ ++ N  +TV D GRGIP            L   ++ L+ GGK+D+  ++ S GL+GV
Sbjct: 77  EIDIEENLRVTVRDYGRGIPQGK---------LVEAVSVLNTGGKYDSKAFKKSVGLNGV 127

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+  VNALS    V   R+  +    F RG   +   K  K  ++ GT I F PD     
Sbjct: 128 GVKAVNALSSRFEVKSFREGKVRDITFERGEKKTD--KTSKSTDETGTFIYFEPD-DTLF 184

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F    +  M ++  YL+  +   ++  +                  GL+  L   +
Sbjct: 185 QNYQFHDDIVETMLRNYTYLNSGLAIMYNGRRI-------------LSRNGLEDLLNDNM 231

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRV 336
            N  L       G+          +E A     +  E    + N   T +GGTH+S  + 
Sbjct: 232 TNDGLYPIIHIKGE---------DIEVAFTHTNQYGEEYHSFVNGQHTTQGGTHQSAFKE 282

Query: 337 ALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR-- 394
            + R IK++          +    D+    V  +++ + EP F  QTK KL S       
Sbjct: 283 HIARTIKEFYN-------KNYEYIDIRNGLVAAIAINVEEPVFESQTKIKLGSTLMAPNG 335

Query: 395 -----TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
                 V + L+   D++L  +P  A  +   + E   ER       ++ R+ A +    
Sbjct: 336 ETINKYVGDFLKKEVDNFLHIHPDVAEVMENKIKESERERKAMAGVTKLARERAKKANLH 395

Query: 450 PGKLADCSQNIAHGT-------ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
             KL DC  + +           +FI EGDSA GS  ++R+ + QAV  LRGK LN    
Sbjct: 396 NRKLRDCRIHYSDTKNDRKEESSIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSFGL 455

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
             + +  N++   L  AL            LRY KVI+ TDADVDG HI  L++TFF Q 
Sbjct: 456 TKKVVYENEEFNLLQAALDIEEGLDT----LRYNKVIVATDADVDGMHIRLLIITFFLQF 511

Query: 563 MYDLIEQKHLFLISPPLFRI--------------------TQGTK-----SVYAHDEEHK 597
             +LI++ H+F++  PLFR+                     +G +     + Y + EE +
Sbjct: 512 FPELIKKGHVFVLQTPLFRVRNRRTKIRDKQVIEEADAKLKKGERKSDFITRYCYSEEER 571

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           QK +++         EI+RFKGLGE+   +     +  + R L +V ++K+       Q 
Sbjct: 572 QKAIKDLGTD----PEITRFKGLGEISPDEFAH-FIGPDMR-LEQVTLHKN----DQVQK 621

Query: 658 SINKLMGTKADERFKFIQERASFIDDV 684
            +   MG    ER  FI +     +D+
Sbjct: 622 LLEYYMGKNTMERQNFIIDNLVIEEDL 648


>gi|189460239|ref|ZP_03009024.1| hypothetical protein BACCOP_00876 [Bacteroides coprocola DSM 17136]
 gi|189433100|gb|EDV02085.1| hypothetical protein BACCOP_00876 [Bacteroides coprocola DSM 17136]
          Length = 644

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 185/684 (27%), Positives = 294/684 (42%), Gaps = 97/684 (14%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +Y   +IR L  +E VR RPGMYIG        E  ++ L  EV+DN +DE   G    I
Sbjct: 14  SYTEENIRHLSDMEHVRTRPGMYIGRLGDGSQAEDGIYVLLKEVVDNCIDEFKMGAGKRI 73

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           E+ ++ N  ++V D GRGIP+          +L   ++ L+ GGK+D   ++ S GL+GV
Sbjct: 74  EIQMEDNLRVSVRDYGRGIPLG---------SLVDAVSMLNTGGKYDTKAFKKSVGLNGV 124

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G   VNALS        R   +    F++G  +S   +      + GT I F PD  +F 
Sbjct: 125 GAKAVNALSSRFIARSVRDGQMREAVFAKGELISDTTQ--STEEENGTYIFFEPDNTLFL 182

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    +  M ++  YL+  +   ++  +                  GL+  L   +
Sbjct: 183 NYH-FRPEYIETMLRNYTYLNTGLSIYYNGHRI-------------VSRNGLEDLLNDNM 228

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            ++ L                   +E A     +   E  S+ N   T +GGTH+S  + 
Sbjct: 229 TSQGLYPIVHL---------KDEDIEIAFTHSPQYGEEYYSFVNGQHTTQGGTHQSAFKE 279

Query: 337 ALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
            + R IK++          ++   D+    V  +++ + EP F  QTK KL SL      
Sbjct: 280 HIARTIKEFYG-------KNMEFQDIRNGLVAAIAINVIEPTFESQTKIKLGSLTMAPEK 332

Query: 397 ENALRDP------------------FDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
           ++                        D+YL ++P  A  LL+ + E  +ER       ++
Sbjct: 333 DSDGNPYPLSGISVNKFIGDFIKENVDNYLHKHPDVADVLLQKIQESEKERKAIAGVTKI 392

Query: 439 NRKTAIRKLRLPGKLADCSQN--------------IAHGTELFIVEGDSAGGSAKQARNR 484
            R+ A +      KL DC  +                  + +FI EGDSA GS  ++R+ 
Sbjct: 393 ARERAKKANLHNRKLRDCRIHLNDLKGAKKDEENDPRLESSIFITEGDSASGSITKSRDV 452

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
           + QAV  LRGK LN      + +  N++   L  AL          + LRY KVI+ TDA
Sbjct: 453 NTQAVFSLRGKPLNSFGLTKKVVYENEEFNLLQAALNIEDGL----DGLRYNKVIVATDA 508

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTK----SVYAHDEEHKQKI 600
           DVDG HI  L++TFF Q   DLI++ H++++  PLFR+    K    ++Y + +E +   
Sbjct: 509 DVDGMHIRLLMITFFLQFFPDLIKKGHVYILQTPLFRVRNRKKGVYETIYCYTDEERIAA 568

Query: 601 LEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660
           +E+   +     EI+RFKGLGE+   + +          L  V + K        ++ + 
Sbjct: 569 IEKLGPN----PEITRFKGLGEISPDEFRNFIG--KDMRLELVSLRK----TDAVKELLE 618

Query: 661 KLMGTKADERFKFIQERASFIDDV 684
             MG    ER  FI       +D+
Sbjct: 619 FYMGKNTMERQNFIINNLVIEEDL 642


>gi|254580647|ref|XP_002496309.1| ZYRO0C15422p [Zygosaccharomyces rouxii]
 gi|238939200|emb|CAR27376.1| ZYRO0C15422p [Zygosaccharomyces rouxii]
          Length = 1427

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 148/677 (21%), Positives = 273/677 (40%), Gaps = 61/677 (9%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-----------------------KA 73
           N+SAS+ Y     + +  LE +  RP  YIG  +                          
Sbjct: 5   NKSASERY-----QKITQLEHILKRPDTYIGSVEVQESHQWIYDEESDSMVEKEVSIVPG 59

Query: 74  LHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLE 131
           L  +F E++ NA D  +       IEV++D     + V ++G+GIP+E H K  N    E
Sbjct: 60  LFKIFDEILVNAADNKVRDPSMKKIEVNIDSEANSIDVKNDGKGIPIEIHNK-ENIYIPE 118

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR--QNTIFSQKFSRGIP 189
           +I   L     +D+   +++GG +G G  + N  S E  V  A       + Q++   + 
Sbjct: 119 LIFGHLLTSSNYDDDEKKVTGGRNGFGAKLCNIFSVEFIVETADPGSGNKYVQRWENNMG 178

Query: 190 LSPLEKKEKVRN-KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
           +    K    +     T+I+F+PD K F +    D   L  M +    ++G V+      
Sbjct: 179 VCHPPKITSYKKGPSYTKISFKPDLKRF-NMETLDNDTLGVMRRRVYDVNGSVRDINVYL 237

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
              + K    +     +   L+     +         +      E+        E A+A 
Sbjct: 238 NGKSLKIKTFKNYVELYTKSLERKRIAEGLAPEGSDGKSPPILYERVNDC---WEIALAT 294

Query: 309 CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVG 368
            + + +  S+ N+I T  GGTH + +   + R I +     +     ++ +  +      
Sbjct: 295 SDMSFQQISFVNSIATTTGGTHVNYISDQIVRKITEMLRKQKK----TVKAHQVKNLMFL 350

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
            ++  +  P F+ QTK +L +       +  +   F   ++++ +EA  +L+   E +  
Sbjct: 351 FINCLVENPAFSSQTKEQLTTRVKDFGSQCEISPEFIKKIMKSGLEAK-ILDLATENAHA 409

Query: 429 RLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRS 485
            L++      NR T   KL    K         H   L + EGDSA   A        R 
Sbjct: 410 TLKKSDGTRKNRITDYPKLEDANK---AGTREGHKCTLVLTEGDSALSLAVAGLAVVGRD 466

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDA 544
                PLRGK+LNV  A  ++I+ N +I  + + +G + R +Y +   LRY  ++IMTD 
Sbjct: 467 YYGCYPLRGKMLNVREATVDQIQKNAEIQAIKKIMGLQHRKRYEDTKTLRYGHLMIMTDQ 526

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQGT---KSVYAHDEEHKQKI 600
           D DG+HI  L++ F       L+     L     P+ ++T      + +  ++    +K 
Sbjct: 527 DHDGSHIKGLIINFLDSSFPGLLNIPGFLVEFITPIVKVTITKPRREVISFYNMPDYEKW 586

Query: 601 LEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660
            +E  +  + K +   +KGLG     + ++   D ++       + +    L     + +
Sbjct: 587 RDE--ESHRYKWKQKYYKGLGTSSGQEARQYFSDLDRHLKRFHALQEGEQDL--IDLAFS 642

Query: 661 KLMGTKADERFKFIQER 677
           K    KAD+R +++++ 
Sbjct: 643 K---KKADDRKEWLRQY 656


>gi|317504321|ref|ZP_07962308.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella salivae
           DSM 15606]
 gi|315664572|gb|EFV04252.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella salivae
           DSM 15606]
          Length = 660

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 188/705 (26%), Positives = 302/705 (42%), Gaps = 100/705 (14%)

Query: 25  KSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----EKALHHLFS 79
              E  +      Q  +  Y   +IR L  +E VR RPGMYIG        E  ++ L  
Sbjct: 2   PENETINEAQSRQQEPTVAYTDDNIRHLSDMEHVRTRPGMYIGRLGDGNLPEDGIYVLLK 61

Query: 80  EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139
           EV+DN++DE      + IE+ ++ N  ++V D GRGIP            L   ++ L+ 
Sbjct: 62  EVVDNSIDEFKMKAGDRIEIEVEDNLRVSVRDYGRGIPQGK---------LVEAVSMLNT 112

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGK+D+  ++ S GL+GVGI  VNALS    V   R   +    F +G+ L+ +    + 
Sbjct: 113 GGKYDSKAFKKSVGLNGVGIKAVNALSSHFEVKSFRDGKVRELTFEKGVKLNDVTL--ET 170

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            ++ GT I F PD  +F D   F    +  M ++  YL+  +   ++  +          
Sbjct: 171 DDENGTFIYFEPDKSLFKDY-SFHNDIVETMLRNYTYLNSGLTIMYNGRRI--------- 220

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-Y 318
                   GL   L   + N  L       G+          +E A     +  E    +
Sbjct: 221 ----KSRNGLADLLNDTMTNDGLYPIVHIVGE---------DIEIAFTHTNQYGEEYHSF 267

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPE 378
            N   T +GGTH+S  +  + + IK++          +    D+    V  +++ + EP 
Sbjct: 268 VNGQHTTQGGTHQSAFKEHIAKTIKEFYN-------KNYEYTDVRNGLVAAIAINVEEPV 320

Query: 379 FAGQTKTKLVSLDAQR-------TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           F  QTK KL S             V + ++   D+YL  +P  A  +   + E  +ER  
Sbjct: 321 FESQTKIKLGSTQMAPDGESINKYVGDFVKQNVDNYLHIHPDVAEVIENKIKESEKERKA 380

Query: 432 RRKQREVNRKTAIRKLRLPGKLADCSQNI-------AHGTELFIVEGDSAGGSAKQARNR 484
                ++ R+ A +      KL DC  +           + +FI EGDSA GS  ++R+ 
Sbjct: 381 MAGVTKLARERAKKANLHNRKLRDCRIHFCDAKNDRKEDSSIFITEGDSASGSITKSRDV 440

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
           + QAV  LRGK LN      + +  N++   L  AL          + LRY KVI+ TDA
Sbjct: 441 NTQAVFSLRGKPLNSFGLTKKVVYENEEFNLLQAALDIEDGL----DSLRYNKVIVATDA 496

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT------QGTKSV--------- 589
           DVDG HI  L++TFF Q   +LI++ H++++  PLFR+       +  + +         
Sbjct: 497 DVDGMHIRLLIITFFLQFFPELIKKGHVYVLQTPLFRVRNKRTKIKNKQVIAEADARMDK 556

Query: 590 ----------YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
                     Y + EE + K +++         EI+RFKGLGE+   +     +  + R 
Sbjct: 557 KEKKSDFITLYCYTEEERLKAIKDLGPD----PEITRFKGLGEISPDEFAH-FIGPDMR- 610

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           L +V ++K+    K     +   MG    ER  FI +     +D+
Sbjct: 611 LEQVTLHKNDQVGK----LLEYYMGKNTMERQNFIIDNLVIEEDL 651


>gi|34540199|ref|NP_904678.1| DNA topoisomerase IV subunit B [Porphyromonas gingivalis W83]
 gi|34396511|gb|AAQ65577.1| DNA topoisomerase IV, B subunit, putative [Porphyromonas gingivalis
           W83]
          Length = 644

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 190/688 (27%), Positives = 297/688 (43%), Gaps = 100/688 (14%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVI 90
             +     Y  S I+ LE  E +R RPGMYIG        +  ++ L  EV+DN++DE +
Sbjct: 3   QEKQLQTEYIESDIKTLEWDEHIRRRPGMYIGKLGDGTHADDGIYVLLKEVLDNSVDEFV 62

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
            G    I++++  NG +TV D GRGIP+           L      ++ GGK D+  ++ 
Sbjct: 63  MGAGKSIDITI-ENGTVTVRDYGRGIPLGK---------LVDATCKMNTGGKIDSKAFKK 112

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           S GL+GVGI  VNALS E  VTV R       ++SR   L             GT + F 
Sbjct: 113 SVGLNGVGIKAVNALSTEFVVTVWRDGQTKRVRYSRAELLEE-TDPVPSGEPSGTEVRFT 171

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PD  +F +   +    ++ M ++  +L+  +   ++  K             F    GL+
Sbjct: 172 PDDSLFRNYR-YQEEFVVSMIKNYTFLNTGLSFFYNGKK-------------FLSRKGLE 217

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGT 329
             L   +   +L      +            +E  +   ++  +    + N   T +GGT
Sbjct: 218 DLLAENMTGDALYPIIHLS---------DTDIEIVVTHTQQYGDEFYSFVNGQNTTQGGT 268

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           H S  R A+ R IK++          +    D+       +S+ + EP F  QTKTKL S
Sbjct: 269 HLSAFREAVARTIKEFYS-------KNFEYSDIRSGMAAAISIKVEEPVFESQTKTKLGS 321

Query: 390 LDA-------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
            D        Q+ V + L+   D YL  +   A ++L  + +   ER       ++ R+ 
Sbjct: 322 RDMGPDGPTIQKFVGDFLKKELDDYLHIHTETAEEMLRKIQQSERERKAMSGITKLARER 381

Query: 443 AIRKLRLPGKLADCSQN-------IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           A +      KL DC+ +           T +FI EG+SA GS    R+ + QAV  LRGK
Sbjct: 382 AKKSNLHNKKLRDCTVHLNDPKAKEPERTSIFITEGNSASGSITTCRDANYQAVFSLRGK 441

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLL 555
            LN      + +  N++   L  AL          + LRY +VII TDAD DG HI  L+
Sbjct: 442 PLNCFGLTKKVVYENEEFNLLQAALNIEEGL----DGLRYNRVIIATDADDDGMHIRLLI 497

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRI---------------TQGTKS-----------V 589
           +TFF Q   DL+ + H++++  PLFR+                +G K            +
Sbjct: 498 ITFFLQFFPDLVRKGHVYVLETPLFRVFLPPESKKQTFGATPKRGRKKQESDMPKPVTDI 557

Query: 590 YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDL 649
           Y + E  KQ  L++  K    K +++RFKGLGE+   Q K+   D     L  V + ++ 
Sbjct: 558 YCYSEAEKQAALKQLGK----KADVTRFKGLGEISPEQFKDLI-DEENIRLEPVSLKRE- 611

Query: 650 NSLKDTQDSINKLMGTKADERFKFIQER 677
                 ++ +   MG    ER +FI + 
Sbjct: 612 ---DKIKELLTFYMGKNTSERQEFIIDN 636


>gi|19112597|ref|NP_595805.1| DNA topoisomerase II [Schizosaccharomyces pombe 972h-]
 gi|12644105|sp|P08096|TOP2_SCHPO RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|3393015|emb|CAA20107.1| DNA topoisomerase II [Schizosaccharomyces pombe]
          Length = 1485

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 144/712 (20%), Positives = 269/712 (37%), Gaps = 71/712 (9%)

Query: 2   TDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMR 61
           +  S    ++ P   Q S   +  S +IP      N +++ +   +  + L   E V  R
Sbjct: 34  SSKSRAKKASTPDLRQTSLTSMTASEQIPLVTNNGNGNSNVS---TQYQRLTPREHVLRR 90

Query: 62  PGMYIGGTDE-----------------------KALHHLFSEVIDNAMDEVIAGY-ANLI 97
           P  YIG  +                          L+ +F E+I NA D  +     N +
Sbjct: 91  PDTYIGSIEPTTSEMWVFDSEKNKLDYKAVTYVPGLYKIFDEIIVNAADNKVRDPNMNTL 150

Query: 98  EVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           +V+LD     +++ +NG+GIP+E H K       E+I   L     +D++  +++GG +G
Sbjct: 151 KVTLDPEANVISIYNNGKGIPIEIHDK-EKIYIPELIFGNLLTSSNYDDNQKKVTGGRNG 209

Query: 157 VGISVVNALSDELHVTVARQN--TIFSQKFSRGIPLSPLEKKEKVRNKR-GTRITFRPD- 212
            G  + N  S E  V  A +     + Q +   +          ++     T+ITF+PD 
Sbjct: 210 YGAKLCNIFSTEFVVETADKERMKKYKQTWYDNMSRKSEPVITSLKKPDEYTKITFKPDL 269

Query: 213 -PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
                        + + +     A      K   + ++                  G K 
Sbjct: 270 AKFGMDKIDDDMVSIIKRRIYDMAGTVRETKVYLNNERI--------------SISGFKK 315

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHE 331
           Y++  L + +    E      E         + A A  +   +  S+ N I T  GGTH 
Sbjct: 316 YVEMYLASDTKPDEEPPRVIYE---HVNDRWDVAFAVSDGQFKQVSFVNNISTIRGGTHV 372

Query: 332 SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           + +   +   I +  +    K  +   +  +       ++  I  P F  QTK  L +  
Sbjct: 373 NYVANKIVDAIDEVVKKENKKAPVK--AFQIKNYVQVFVNCQIENPSFDSQTKETLTTKV 430

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           +    +  L D F   + +     + ++E V++ +  +  ++  +      +        
Sbjct: 431 SAFGSQCTLSDKFLKAIKK-----SSVVEEVLKFATAKADQQLSKGDGGLRSRITGLTKL 485

Query: 452 KLAD-CSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKI 507
           + A+      +H   L + EGDSA   A    +   R    V PLRGK+LNV  A   +I
Sbjct: 486 EDANKAGTKESHKCVLILTEGDSAKSLAVSGLSVVGRDYYGVFPLRGKLLNVREASHSQI 545

Query: 508 RNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
            NN++I  + + +G   +  Y +   LRY  ++IMTD D DG+HI  L++ +       L
Sbjct: 546 LNNKEIQAIKKIMGFTHKKTYTDVKGLRYGHLMIMTDQDHDGSHIKGLIINYLESSYPSL 605

Query: 567 IEQ-KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           ++    L     P+ + T+G +    +     +   E    +     +I  +KGLG    
Sbjct: 606 LQIPGFLIQFITPIIKCTRGNQVQAFYTLPEYEYWKE--ANNNGRGWKIKYYKGLGTSDH 663

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
             +K    D ++       + +     +  + +  K    KAD R ++++  
Sbjct: 664 DDMKSYFSDLDRHMKYFHAMQE--KDAELIEMAFAK---KKADVRKEWLRTY 710


>gi|221132667|ref|XP_002158728.1| PREDICTED: similar to topoisomerase (DNA) II alpha, partial [Hydra
           magnipapillata]
          Length = 1323

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 149/671 (22%), Positives = 253/671 (37%), Gaps = 65/671 (9%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-----------------------KALH 75
           S    Y   S      LE + +RP  YIG T+                          L+
Sbjct: 15  SVERIYQKKS-----QLEHIILRPDSYIGSTEPCQQSMWVWDDESSSIISKNITFSPGLY 69

Query: 76  HLFSEVIDNAMDEVIAG-YANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133
            +F E+I NA D        N I+V++D     ++V +NGRGIPVE H K  N     +I
Sbjct: 70  KIFDEIIVNAADNKQRDVKMNTIKVNIDVEKNIISVWNNGRGIPVEMH-KEQNVYVPTLI 128

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
              L     +D++  ++ GG +G G  + N  S +  +        F Q +   +  +  
Sbjct: 129 FGHLLTSSNYDDTEKKVVGGRNGFGAKLCNIFSTKFSIETGCDGKKFKQVWKNNMSKAEP 188

Query: 194 EKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
           E          T +TF PD              + L +     A +   V    + +K  
Sbjct: 189 EHIVDYSGSDFTCVTFSPDLPKFKMDKLDNDFVSLLKRRAYDMAGVCRGVSVYLNGEKL- 247

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
                  + + F    GL      K EN      +I               E  +   E 
Sbjct: 248 -------KVKSFKDYVGLYVKTACKTENGEEQGPKIIH------EIVNPRWEICVTVSES 294

Query: 312 NPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILS 371
             + +S+ N+I T +GGTH + +   L   +    +    K    I    +       ++
Sbjct: 295 GFQHSSFVNSIATTKGGTHVTYIVDQLCDKLIATVKKKTGKGGFDIKPFHVKSHLWVFVN 354

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
             I  P F  QTK  +    +       L D +   +VQ+      +L WV  +SE +L 
Sbjct: 355 TLIENPTFDSQTKENMTLRKSAFGSTCELSDKYIK-MVQDTGVLENILSWVKFKSEAQLN 413

Query: 432 RRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQA 488
           ++     ++ + ++ +       D     +    L + EGDSA        +   R    
Sbjct: 414 KKGS--SSKHSRLKGVPKLEDANDAGTKRSRDCTLIVTEGDSAKALVMAGLSVVGRDKYG 471

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED----LRYEKVIIMTDA 544
           V PLRGK+LNV  A   +I NN +I  LV+ +G +   +Y  E+    LRY  ++IM D 
Sbjct: 472 VFPLRGKLLNVRDASHSQIMNNAEIGSLVKIIGLQFGKKYENENDMKTLRYGHLMIMADQ 531

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ-GTKSVYAHDEEHKQKILEE 603
           D DG+HI  L++ F +     L++   L     P+ + ++   +++        ++  E 
Sbjct: 532 DQDGSHIKGLVINFIHANWPGLLKIPFLEEFITPIIKASKSKKETISFFSIPEFEEWKEA 591

Query: 604 FKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLM 663
              +      I  +KGLG   + + KE   D  +  +  V      +S +    + +K  
Sbjct: 592 TPNY--KSWHIKYYKGLGSSTSIEGKEYFSDMQRHRI--VFEYDGPSSDEALILAFSK-- 645

Query: 664 GTKADERFKFI 674
              A+ER  ++
Sbjct: 646 -KCANERKNWL 655


>gi|269302503|gb|ACZ32603.1| putative topoisomerase IV, B subunit [Chlamydophila pneumoniae
           LPCoLN]
          Length = 602

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 182/645 (28%), Positives = 295/645 (45%), Gaps = 62/645 (9%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           Y  +SI  L  L+ +R+R GMYIG        E  ++ LF EV+DN +DE I G+   ++
Sbjct: 4   YTEASILSLASLDHIRLRAGMYIGRLGNGSQKEDGIYTLFKEVVDNGIDEFIMGHGKSLK 63

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           +S   +  +++ D GRGIP+           L   ++ ++ G K+    +  S GL+GVG
Sbjct: 64  IS-ASDKQISIQDQGRGIPLGK---------LIDCVSKINTGAKYTQDVFHFSVGLNGVG 113

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +  VNALS+   V   R+       F RG+      K+   ++  GT ++F PDP IF +
Sbjct: 114 LKAVNALSEIFSVRSVRKKKYHLATFHRGVLQES--KQGSTKDPDGTFVSFTPDPSIFPE 171

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L    +   YL   ++  ++ +              F    GLK     ++ 
Sbjct: 172 FT-FNHDFLKDKIRQYTYLHSGLEIRFNDE-------------VFISHNGLKDLFDAEIT 217

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
              L S      + E        +E             S+ N   T +GGTH +  + A+
Sbjct: 218 EPPLYSP--LFFQNEDLTFIFSHLEGNT------ERYFSFVNGQETLDGGTHLTAFKEAI 269

Query: 339 TRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +G+ ++   T        +S+D+    VG +++ I  P F  QTK KL +   + ++  
Sbjct: 270 VKGVNEFFGKT-------FVSNDIREGIVGCIAIKIASPIFESQTKNKLGNTQIRSSLIK 322

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            +++     L ++ + A  LLE +    + R   +  ++  +    +      KL DC  
Sbjct: 323 DVKEAIVQALRKDKVAAELLLEKIKFNEKTRKNIQFIKQDLKSKQKKVHYKIPKLRDCKF 382

Query: 459 NIAHGT------ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           +    +       +F+ EG+SA  S   +RN   QAV  LRGK +NV S    K+  N +
Sbjct: 383 HYNDRSLYGEASSIFLTEGESASASILASRNPLTQAVFSLRGKPMNVFSLEETKMYKNDE 442

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           +  L  ALG           LRY KVI+ TDADVDG HI +LL+TFF + +  L+E  HL
Sbjct: 443 LFYLATALGITQNGIQH---LRYNKVILATDADVDGMHIRNLLITFFLKTLLPLVENNHL 499

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           F++  PLF++   T ++Y + E+ K + L++F K     +EI+RFKGLGE+   +     
Sbjct: 500 FILETPLFKVRNKTTTLYCYSEQEKMQALQQFGKKD-SSLEITRFKGLGEISPKEFAA-F 557

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           +    R L  V I     SL+     +   MG    ER +FI + 
Sbjct: 558 IGPEIR-LTPVTI----TSLESISSILQFYMGKNTKERKQFIMDN 597


>gi|312069494|ref|XP_003137708.1| TOPoisomerase family member [Loa loa]
 gi|307767126|gb|EFO26360.1| TOPoisomerase family member [Loa loa]
          Length = 1485

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 137/679 (20%), Positives = 251/679 (36%), Gaps = 70/679 (10%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD------------------------ 70
               +    Y   S      LE + +RP  YIG  +                        
Sbjct: 71  PKRLTIEKIYQKKS-----QLEHILLRPDTYIGSVEHTDKAPMWVYDAEVERIVQRDISY 125

Query: 71  EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKS 128
              L+ +F E++ NA D        NLI ++++     ++V +NG+GIPV  H K     
Sbjct: 126 VPGLYKIFDEILVNAADNKQRDPKMNLIRININKETNEISVFNNGKGIPVVLH-KVEQLY 184

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTV--ARQNTIFSQKFSR 186
             E+I  TL     +D+S  +++GG +G G  + N  S E  V          F Q +  
Sbjct: 185 VPELIFGTLLTSSNYDDSERKVTGGRNGYGAKLCNIFSKEFTVETSSKEYGKAFKQTWKN 244

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLLKMTQSKAYLSGRVKTC 244
            +         K   +  T +TF+PD   F          + + +     A  +  VK  
Sbjct: 245 NMTKDKDPFVSKSVGEDFTHVTFKPDLTKFKMIELDDDIISLISRRAYDIAGSTKGVKVY 304

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
            +                     G K Y++   ++      E +    E+        E 
Sbjct: 305 LNGK--------------LLPVQGFKQYVEQYTKHNLDNDGEPYKIAYEQ---VNERWEV 347

Query: 305 AIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMI 364
           A+   E+  +  S+ N+I T +GG H   +   +T  +    +    K  +++    +  
Sbjct: 348 ALTVSEKGFQQVSFVNSIATTKGGRHVDYVVDQITAKLIDTIKKKVGKSGVNVKPFQIKS 407

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
                ++  +  P F  QTK  +         +  + + F + +++       +L WV  
Sbjct: 408 HMWIFVNSLVENPTFDSQTKETMTLQAKNFGSKCEMSERFINAVMK-CGIVEAVLAWVRF 466

Query: 425 RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA--- 481
           + +E     K+    + + ++ +       D     +    L + EGDSA   A      
Sbjct: 467 KQQE--TLDKKCSTKKTSKLKGIPKLEDANDAGTKNSSLCTLILTEGDSAKSLAVSGLGV 524

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR----EEDLRYEK 537
             R    V PLRGK+LNV     ++I  N +I  L++ +G + R +Y      + LRY K
Sbjct: 525 VGRDRYGVFPLRGKMLNVREGSHKQIMENAEINALIKIIGLQYRLKYDKDEDMKTLRYGK 584

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           +++M D D DG+HI  L++ F +     LI +  +     P+ + T+G +S         
Sbjct: 585 IMVMADQDQDGSHIKGLVINFIHYNWPVLIRRNFVEEFITPIVKATKGKESFSFFSLPEY 644

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
            +              I  +KGLG   + + KE   D  +   +R + + +         
Sbjct: 645 AEWRN--NTENWKTYRIKYYKGLGTSTSKEAKEYFTDMVRHR-IRFQYSGE-EDDNSLDM 700

Query: 658 SINKLMGTKADERFKFIQE 676
           + +K    K ++R  ++  
Sbjct: 701 AFSK---KKIEDRKVWLTN 716


>gi|315606879|ref|ZP_07881888.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella buccae
           ATCC 33574]
 gi|315251544|gb|EFU31524.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella buccae
           ATCC 33574]
          Length = 679

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 188/717 (26%), Positives = 296/717 (41%), Gaps = 101/717 (14%)

Query: 13  PPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIG----- 67
                    K   S   P +   +    +  Y   +IR L  +E VR RPGMYIG     
Sbjct: 11  DKSKDLKQSKPAGSDPQPPNLGGSINHDTPTYTDDNIRHLSDMEHVRTRPGMYIGRLGDG 70

Query: 68  GTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNK 127
              E  ++ L  EVIDN++DE      + IEV +D N  ++V D GRGIP          
Sbjct: 71  SLPEDGIYVLLKEVIDNSIDEFKMNAGDRIEVDIDDNLRVSVRDYGRGIPQGK------- 123

Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187
             L   ++ L+ GGK+D+  ++ S GL+GVG+  VNALS        R  T+    F RG
Sbjct: 124 --LVEAVSMLNTGGKYDSKAFKKSVGLNGVGLKAVNALSARFEAKSYRDGTVRELVFERG 181

Query: 188 IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247
           +         +  ++ GT I F PD  +      F    +  M ++  YL+  +   ++ 
Sbjct: 182 VLKDDETH--ETSDESGTFIFFEPDA-LLFKNYKFHDDIVETMLRNYTYLNTGLTIMYNG 238

Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307
            +                  GLK  L   +    L       G+          +E A  
Sbjct: 239 RRI-------------LSRHGLKDLLTDNMTVDGLYDIVHVKGE---------DIEIAFT 276

Query: 308 WCEENPEITS-YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISA 366
              +  E    + N   T +GGTH+S  +  + + IK++               D+    
Sbjct: 277 HTNQYGEEYHSFVNGQHTTQGGTHQSAFKEHIAKTIKEFYG--------KYEYGDIRNGL 328

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQR-------TVENALRDPFDHYLVQNPIEATKLL 419
           V  +++ + EP F  QTK KL S             V + ++   D+YL  +   A  + 
Sbjct: 329 VAAIALNVEEPVFESQTKIKLGSTQMAPDGDSINKYVGDFIKKEIDNYLHIHQDVAEVIE 388

Query: 420 EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGT-------ELFIVEGD 472
             + E   ER       ++ R+ A +      KL DC  + +           +FI EGD
Sbjct: 389 NKIKESERERKAMAGVTKLARERAKKANLHNRKLRDCRIHFSDVKNERKEEASIFITEGD 448

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           SA GS  ++R+ + QAV  LRGK LN      + +  N++   L  AL            
Sbjct: 449 SASGSITKSRDVNTQAVFSLRGKPLNSFGLTKKVVYENEEFNLLQAALDIEDGLDT---- 504

Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ-------- 584
           LRY KVI+ TDADVDG HI  L++TFF Q   +LI++ H++++  PLFR+          
Sbjct: 505 LRYNKVIVATDADVDGMHIRLLIITFFLQFFPELIKKGHVYVLQTPLFRVRNKRTKVKDK 564

Query: 585 -----------GTK------SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
                      G +      + Y + +E +Q+ +++         EI+RFKGLGE+   +
Sbjct: 565 KVIEEADAKRDGKEKKSDFITHYCYSDEERQQAIKDLGPD----PEITRFKGLGEISPDE 620

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
                +  + R L +V ++K+       Q  +   MG    ER  FI +     +D+
Sbjct: 621 FAH-FIGPDMR-LEQVTLHKN----DQVQKLLEYYMGKNTMERQNFIIDNLVIEEDI 671


>gi|170592146|ref|XP_001900830.1| Probable DNA topoisomerase II [Brugia malayi]
 gi|158591697|gb|EDP30301.1| Probable DNA topoisomerase II, putative [Brugia malayi]
          Length = 1570

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 140/679 (20%), Positives = 252/679 (37%), Gaps = 70/679 (10%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD------------------------ 70
               S    Y   S      LE + +RP  YIG  +                        
Sbjct: 72  PKGLSIEKIYQKKS-----QLEHILLRPDTYIGSVERTDKAPLWVYDMETERIIQRDISY 126

Query: 71  EKALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKS 128
              L+ +F E++ NA D        NLI+++++     ++V +NG+GIPV  H K     
Sbjct: 127 VPGLYKIFDEILVNAADNKQRDSKMNLIKININKETNEISVFNNGKGIPVVLH-KVEQLY 185

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTV--ARQNTIFSQKFSR 186
             E+I  TL     +D+S  +++GG +G G  + N  S E  V          F Q +  
Sbjct: 186 VPELIFGTLLTSSNYDDSERKVTGGRNGYGAKLCNIFSREFTVETSSKEYGKAFKQTWKN 245

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244
            +         K   +  TR+TF+PD       +      + + +     A  +  VK  
Sbjct: 246 NMTKDKDPFVSKSSGEDFTRVTFKPDLAKFRMTELDDDIISLISRRAYDVAGSTKGVKVY 305

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
            +                     G K Y+    ++      E +    E+        E 
Sbjct: 306 LNGK--------------LLPVQGFKQYVDQYAKHNLDNDGEPYKVVYEQ---VNERWEV 348

Query: 305 AIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMI 364
           A+   E+  +  S+ N+I T +GG H   +   +T  +    +    K  +++    +  
Sbjct: 349 ALTVSEKGFQQVSFVNSIATTKGGRHVDYVADQITAKLIDTIKKKVGKSGVNVKPFQIKS 408

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
                ++  +  P F  QTK  +         +  L + F + +++  I    L     +
Sbjct: 409 HMWIFVNSLVENPTFDSQTKETMTLQAKSFGSKCELSERFINAVMKCGIVEAVLAWVRFK 468

Query: 425 RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA--- 481
           + E   ++   ++ ++   I KL       D     +    L + EGDSA   A      
Sbjct: 469 QQETLDKKCSSKKTSKLKGIPKLEDAN---DAGTKNSSLCTLILTEGDSAKSLAVSGLGV 525

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR----EEDLRYEK 537
             R    V PLRGK+LNV     ++I  N +I  L++ +G + R +Y        LRY K
Sbjct: 526 VGRDRYGVFPLRGKMLNVREGSHKQIMENAEINSLIKIIGLQYRLKYDKDEDMRTLRYGK 585

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597
           +++M D D DG+HI  L++ F +     LI +  +     P+ + T+G +S+        
Sbjct: 586 IMVMADQDQDGSHIKGLVINFIHYNWPVLIRRNFVEEFITPIVKATKGKESLSFFSLPEY 645

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
            +              I  +KGLG   + + KE   D  +   +R + + +         
Sbjct: 646 AEWRN--NTENWKTYRIKYYKGLGTSTSKEAKEYFTDMIRHR-IRFQYSGE-EDDSSLDM 701

Query: 658 SINKLMGTKADERFKFIQE 676
           + +K    K ++R  ++  
Sbjct: 702 AFSK---KKIEDRKVWLTN 717


>gi|312214411|emb|CBX94403.1| similar to DNA topoisomerase II [Leptosphaeria maculans]
          Length = 1716

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 144/686 (20%), Positives = 263/686 (38%), Gaps = 73/686 (10%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD---------------------- 70
                  ASD Y     ++L  LE +  RP  YIG  +                      
Sbjct: 135 SKPKKGGASDKY-----QMLTHLEHIMKRPDTYIGSVERQTDKMWVYNSSTESMEFRDVT 189

Query: 71  -EKALHHLFSEVIDNAMDEVIAG-YANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNK 127
               L+ +F E++ NA D        + I V+LD   G +++ ++G+GIP+E H +    
Sbjct: 190 YVPGLYKIFDEILVNAADNKQNDKNMSEIRVTLDRETGEISIKNDGKGIPIEIHKEH-GI 248

Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK--FS 185
              E+I   L     +D++  +++GG +G G  + N  S E  V           K  ++
Sbjct: 249 YVPEMIFGHLLTSSNYDDNQQKVTGGRNGYGAKLCNVFSTEFTVETVDSKQKKKYKQTWT 308

Query: 186 RGIPLSPLEKKEK-VRNKRGTRITFRPDPKIFGD--KAGFDAARLLKMTQSKAYLSGRVK 242
             +      K      +   T+++++ D   FG         A + + T   A     VK
Sbjct: 309 DNMSKMGKAKIVDFKSSDDYTKVSWKADYDRFGMTGIDDDFEAMVKRRTYDIAGTLRGVK 368

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
              + D+         +   F     + T    + + RS    E     T+K        
Sbjct: 369 VYLNGDR--------VKVTSFAKYMEMYTKSIAREQGRSEDDKEANVIITDKHD----RW 416

Query: 303 EWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDL 362
           +   A  +      S+ N+I T  GGTH + +   +   +       +NK A+ +    +
Sbjct: 417 DIGFAVSDGAFNQVSFVNSIATTSGGTHVNYIAEQIVDRLLA-IVNKKNKAAVKLKPAQI 475

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
                  ++  I  P F  QTK +L +  +Q   +  L D F   + +     T +++ +
Sbjct: 476 KNHIFLFVNCSIVNPAFTSQTKEQLTTKSSQFGSKPVLSDKFLKAIEK-----TDVIQNI 530

Query: 423 IERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           +  ++++  +  ++    K                    H   L + EG+SA   A   R
Sbjct: 531 MHFAQQKADQMMKKTDGNKRNRISNAKLTDANKAGTKDGHLCTLILTEGESASVLALAGR 590

Query: 483 NRSNQ---AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY---REEDLRYE 536
              NQ    V PLRGK+LNV  A  ++I  N +I ++ + +G + + +Y     + LRY 
Sbjct: 591 AVVNQDLFGVFPLRGKLLNVRDATVDQIMKNAEIQNIKKFMGLQHKKEYTVSDMKSLRYG 650

Query: 537 KVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQG-----TKSVY 590
            ++IMTD D DG+HI  LL+ F   +   L++    L     P+ ++ +G          
Sbjct: 651 HLMIMTDQDHDGSHIKGLLINFLQCQFPSLLKIPGFLLEFITPIVKVWKGDPKNPRSLKS 710

Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
                  ++  E+ K   +   E   FKGLG       +    D +        + ++  
Sbjct: 711 FFSMPEYEEWKEQHK--HEKGWEHKYFKGLGTSDIPDAQIYFKDLDTHMKSFQVMREEEE 768

Query: 651 SLKDTQDSINKLMGTKADERFKFIQE 676
             K  + + +K    KAD R +++++
Sbjct: 769 --KLIELAFSK---KKADARKEWLRD 789


>gi|298712279|emb|CBJ26730.1| DNA topoisomerase II [Ectocarpus siliculosus]
          Length = 1809

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 151/726 (20%), Positives = 258/726 (35%), Gaps = 87/726 (11%)

Query: 1   MTDDSIDLFS--TLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPV 58
           M D                G    L  S     +     Q+    Y          LE +
Sbjct: 1   MADTENRPLGISKGSKAKGGKKAPLGSSRGGGANSNGGGQTVEQRYQKK-----TQLEHI 55

Query: 59  RMRPGMYIGGTD-----------------------EKALHHLFSEVIDNAMDEVIAG-YA 94
            +RP  YIG T+                          L+ +F E+I NA D        
Sbjct: 56  LLRPDTYIGSTEKMSQEMWVYDEVADSIVKRAVTFVPGLYKIFDEIIVNAADNKQRDENM 115

Query: 95  NLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           + ++V++D   G ++V ++G GIP++ H +       E+I   L  G  FD+   + +GG
Sbjct: 116 SKLKVTVDAESGKISVWNDGAGIPIQMHKEHH-IYVPELIFGNLLTGSNFDDDQKKTTGG 174

Query: 154 LHGVGISVVNALSDELHVTVARQN--TIFSQKFSRGI-PLSPLEKKEKVRNKRGTRITFR 210
            +G G  + N  S E  V  A ++    + Q F   +      E          T ITF 
Sbjct: 175 RNGFGAKLANIYSTEFVVETADRDAGKHYRQVFRNNMQEKEAPEIDCDYEGPDFTCITFT 234

Query: 211 PDPKIFGD--KAGFDAARLLKMTQSKAYLSGRV----KTCWSCDKEIAEKYGIPEKEEFY 264
           PD K F          A L K     A   G         +  ++ +             
Sbjct: 235 PDWKRFHMTGMEADTIALLRKRVYDMAGCMGGYAGASVKVYLDNRRVK------------ 282

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILT 324
              G K Y+       + +  E            R  V  A++  +   +  SY N I T
Sbjct: 283 -VSGFKDYMSMYEGMETPVIFESI--------GDRWEVGVAVS-ADSVFQQVSYVNAICT 332

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
            +GGTH   +   +   I K   + + K    +    +       ++  +  P F  Q+K
Sbjct: 333 VKGGTHVECVANQV---INKLLPVLKRKHKAEVKGHFVKNHLCVFVNGLVENPAFNSQSK 389

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI 444
             L S D        + D     L ++ I    L         ++ ++  ++   + + +
Sbjct: 390 EALTSKDTLFGSVPKISDAGLKKLEKSEIVDRVLSW----AKHKQNQQLNKKSGKKSSKL 445

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVAS 501
             +             +    L + EGDSA   A        R    V PL+GK+LNV  
Sbjct: 446 TGITKLDDANHAGTAKSQDCTLILTEGDSAKTLAVSGLGVVGRDRYGVFPLKGKLLNVRE 505

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A   ++  N++I ++V+ LG +    Y +   LRY  ++IMTD D DG+HI  LL+ F +
Sbjct: 506 ATGPQVLKNEEIQNVVKILGLKFNHTYDDTKQLRYGHLMIMTDQDHDGSHIKGLLINFVH 565

Query: 561 QEMYDLIE-QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
                L++    L     P+ ++++G   +  +         +E   +GKG      +KG
Sbjct: 566 HYWPSLLKIDGFLQEFITPIVKVSKGRNELSFYTVPEYTVW-KEGHANGKG-WNAKYYKG 623

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ---- 675
           LG   A + KE     +   L   E   D         + +K    + ++R ++++    
Sbjct: 624 LGTSTAKEAKEYFAALDTHQLE-FEWQDDDRDDDLIDMAFSK---KRVEDRKEWLRGFKA 679

Query: 676 -ERASF 680
              A +
Sbjct: 680 GTHADY 685


>gi|315282117|ref|ZP_07870597.1| DNA topoisomerase 4 subunit B [Listeria marthii FSL S4-120]
 gi|313614234|gb|EFR87898.1| DNA topoisomerase 4 subunit B [Listeria marthii FSL S4-120]
          Length = 526

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 169/524 (32%), Positives = 268/524 (51%), Gaps = 32/524 (6%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L VT+ R    + QKF  G       KK       GT I F+PDP IF     F+   L 
Sbjct: 1   LIVTINRDGATYQQKFKDGGKPDGTLKKIGKSKATGTTIRFKPDPAIFPTT-SFNYETLS 59

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           +  +  A+L   +      ++       +   E F+F  G+K +++   E + ++     
Sbjct: 60  ERLRESAFLLKGMLIELIDER-------VGMAEAFHFEEGVKNFVEYINEGKDVLHPVA- 111

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
           + + E        VE A  + +     I S+ N + T   G+HESG++ A+TR    YA 
Sbjct: 112 SFEGENATI---EVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMTRIFNDYAR 168

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDP 403
                 ++  ++   D+      +LS+ + E   +F GQTK KL + +A++ V+  + + 
Sbjct: 169 RVNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQAVDAVVAEH 228

Query: 404 FDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLADCSQNI 460
             ++L +NP  ++ L++  ++  E R   RK RE  R    +K     L GKL       
Sbjct: 229 LAYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQSRN 288

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
            +  EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I  N++I  ++  +
Sbjct: 289 PNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTIIHTV 348

Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           G    +++  ED  Y+KV+IMTDAD DGAHI  LLLTFFY+ M  L+E   +F+  PPL+
Sbjct: 349 GAGVGTEFDVEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIALPPLY 408

Query: 581 RITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           ++++G   K V  YA  +E     +++  K       I R+KGLGEM A QL ET M+ +
Sbjct: 409 KVSRGSGKKEVIEYAWTDEELDSAIQKIGK----GYMIQRYKGLGEMNADQLWETTMNPD 464

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            RTL+RV ++         +  +  LMG K + R ++I++   F
Sbjct: 465 TRTLIRVRVDD----SARAERRVATLMGDKVEPRRQWIEKHVEF 504


>gi|320166777|gb|EFW43676.1| DNA topoisomerase II [Capsaspora owczarzaki ATCC 30864]
          Length = 1628

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 144/707 (20%), Positives = 263/707 (37%), Gaps = 80/707 (11%)

Query: 15  QSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE--- 71
            ++ ++  L  +     +      +  + Y       LE  + + +RP  YIGG      
Sbjct: 26  PTKKAAAPLGDASSANAAGPAKKLTVEETY-----LKLELRDQILLRPDTYIGGVATETK 80

Query: 72  -------------------KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVV 110
                                L  +F E++ NA D          I V ++  +  ++V 
Sbjct: 81  NLWVCNEEGKFENRDVSFVPGLFKIFDELLVNASDNKQRDSSMTTIRVDINQADNTISVW 140

Query: 111 DNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELH 170
           ++G+GIP+  H K  N     +I + L     +  +  + +GG +G G  + N  S E  
Sbjct: 141 NDGKGIPIRMHTK-ENVWVPTLIFSHLLTSDNYTTNKKKTTGGRNGYGAKLANIFSTEFV 199

Query: 171 VTVARQNTIFSQK--FSRGIPLSPLEKKEKV---RNKRGTRITFRPDPKIFGDKA--GFD 223
           V      T    K  F++ +  S                T+ITF+PD   F         
Sbjct: 200 VETQDHETKQRFKQVFTKNMSQSGQAIISPSEGGSKGDFTKITFKPDLSRFKMDYLDDDI 259

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
                +     A     +K   + +                       Y++  L +  L 
Sbjct: 260 VGLFRRRVYDIAGCMRGLKVYLNDN--------------LIPIRSFVDYVKLYLPDAPLN 305

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIK 343
           S                  E  +    +  +  S+ N I T  GGTH + +   +   I 
Sbjct: 306 SIAHERVS--------DRWEVCVTVAPDGHQQVSFVNGINTYTGGTHVNHVLELIYPTIS 357

Query: 344 KYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDP 403
           K     +  +   I    +  +    ++  I +P F  Q+K +L     +   E    D 
Sbjct: 358 K---ALKQPKGNEIKKPQIKNNISIFVNALIDDPTFKSQSKEELSLSVKEFGSECTFSDK 414

Query: 404 FDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD-CSQNIAH 462
           F+  L+      T +++ +++++ E+LR+   +   RK++          A+      + 
Sbjct: 415 FNKALLS-----TGIVQAILDKNNEKLRKELDKISGRKSSKISGIAKLDDANEAGGRNSA 469

Query: 463 GTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
              L + EGDSA   A        R    V PLRGK+LNV  A   +IR NQ+I  +++ 
Sbjct: 470 QCTLILTEGDSAKALAVSGLGLVGRDYYGVFPLRGKLLNVRDAAHHQIRENQEIEHVIKI 529

Query: 520 LGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE-QKHLFLISP 577
           LG +   +Y   + LRY +++IMTD D DG+HI  LL+ F +     L+     L     
Sbjct: 530 LGLQFNKKYTSVEGLRYGRLMIMTDQDSDGSHIKGLLINFLHHFWPSLLTVSGFLVEFIT 589

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           P+ + T+G + +        Q+  EE          I  +KGLG   + + KE   + + 
Sbjct: 590 PIVKATKGKQVLTFFTVPQYQQWREEDDGRACKGWTIKYYKGLGTSTSQEAKEYFSNMDV 649

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER--ASFID 682
             +         +  +    + +K    +AD+R +++++    +F+D
Sbjct: 650 HQIPF--TWSGEDDGQAIDLAFSK---KRADDRKEWLRQFRAGTFLD 691


>gi|260910858|ref|ZP_05917502.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635009|gb|EEX53055.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 680

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 191/714 (26%), Positives = 303/714 (42%), Gaps = 103/714 (14%)

Query: 12  LPPQSQGSSEKLKKSGEIPDSPAFANQSASDN---YDASSIRILEGLEPVRMRPGMYIGG 68
            P   Q  +     + +   +    +   ++N   Y   +IR L  +E VR RPGMYIG 
Sbjct: 6   TPDNQQEMTFDSANTADSNTNNTPTSTQQNNNQPAYTDDNIRHLSDMEHVRTRPGMYIGR 65

Query: 69  TD-----EKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
                  E  ++ L  EVIDN++DE        IEV L+ +  ++V D GRGIP      
Sbjct: 66  LGDGTQAEDGIYVLLKEVIDNSIDEFKMQAGKRIEVDLEDDLRVSVRDYGRGIPQGK--- 122

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
                 L   ++ L+ GGK+D+  ++ S GL+GVG+  VNALS        R+  + +  
Sbjct: 123 ------LVEAVSMLNTGGKYDSKAFQKSVGLNGVGLKAVNALSVRFEARSYREGKVRTVV 176

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           F RG  +S     E    + GT + F PD  +F +   F A  +  M ++  YL+  +  
Sbjct: 177 FERGELISDNT--ESTNEENGTFVFFEPDNTLFLNYR-FKAEFVETMLRNYTYLNAGLAI 233

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
             +  + I                GL   L  ++ N  L       G+          +E
Sbjct: 234 MHNGRRII-------------SRNGLADLLNDRMTNDGLYPIIHIQGE---------DIE 271

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDL 362
            A     +   E  S+ N   T +GGTH+S  +  + + IK +          +    D+
Sbjct: 272 IAFTHANQYGEEYYSFVNGQHTTQGGTHQSAFKEHIAKTIKDFFS-------KNYEYVDI 324

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQR-------TVENALRDPFDHYLVQNPIEA 415
               V  +++ ++EP F  QTK KL SL            V + ++   D+YL  +   A
Sbjct: 325 RNGMVAAIAINVQEPMFESQTKIKLGSLTMSPGGESVNKYVGDFIKREVDNYLHIHADVA 384

Query: 416 TKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAH-------GTELFI 468
            +L   + E   ER       ++ R+ A +      KL DC  + +         + +FI
Sbjct: 385 EELKRKIDESERERKAMAGVTKMARERAKKANLHNRKLRDCRIHFSDVKNDRKEESSIFI 444

Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528
            EGDSA GS  ++R+ + QAV  LRGK LN      + +  N++   L  AL        
Sbjct: 445 TEGDSASGSITKSRDVNTQAVFSLRGKPLNSYGLTKKVVYENEEFNLLQAALDIEEGLDT 504

Query: 529 REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT----- 583
               LRY KVI+ TDADVDG HI  L++TFF Q   +L+++ H++++  PLFR+      
Sbjct: 505 ----LRYNKVIVATDADVDGMHIRLLIITFFLQFFPELVKKGHVYVLQTPLFRVRNRRTK 560

Query: 584 -QGTKSV-------------------YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
            +  K +                   Y ++E+ + K + E         EI+RFKGLGE+
Sbjct: 561 IKDKKVIAEADERLMKGERKNDFITRYCYNEDERLKAIAELGPD----PEITRFKGLGEI 616

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
              +     +    R L +V ++K+          +   MG    ER  FI + 
Sbjct: 617 SPEEF-THFIGPEMR-LEQVTLHKN----DQVHKLLEYYMGKNTMERQNFIIDN 664


>gi|148361411|gb|ABQ59287.1| DNA gyrase subunit B [Mycoplasma gateae]
          Length = 532

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 207/543 (38%), Positives = 293/543 (53%), Gaps = 28/543 (5%)

Query: 89  VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148
            +AG+A+ I V+L  N F+ + DNGRG+PV+ HP    KS +E ILT LHAGGKFD+S Y
Sbjct: 1   AMAGFASEINVTLHPNNFIEIEDNGRGMPVDIHP-STQKSAVETILTVLHAGGKFDSSNY 59

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVR-NKRGTR 206
           ++SGGLHGVG SVVNALSD   V V R   +  QK+  G  P   L+   ++  N+ GTR
Sbjct: 60  KVSGGLHGVGASVVNALSDSFEVWVKRNGKLHYQKYENGGKPNEALKVIGEIDLNETGTR 119

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F PD  +      FD   +    +  AYL+  +K       +  +K        F F 
Sbjct: 120 IKFHPDYTVMDRI-DFDFGTISDHIKQVAYLNKGLKFNLIDLTKNTKKT-------FCFD 171

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT------------VEWAIAWCEENPE 314
           GG+  Y++   + +  I+S++           + +            VE A  + E    
Sbjct: 172 GGIVDYVKELNKGKKTINSDVIYALGSFTDVDKPSDESKQSKKVDILVEVAFQYNEAYQS 231

Query: 315 I-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSV 372
              SY N I T EGGTHESG   ++ R   KYAE  +  K +  I  +D     + ++S+
Sbjct: 232 TVISYANNIQTTEGGTHESGFYDSIVRIFNKYAEENKLFKASEKISKEDSKEGLIAVISI 291

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
              +P F GQTK+K  S +A+      + +  + YL +NP  A  ++   ++    RL  
Sbjct: 292 KHSDPVFDGQTKSKFGSANARYATNKVVSEVLERYLAENPNIAKNIINKCLQSQRARLAA 351

Query: 433 RKQREVNRK-TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
              +E +RK   +    LPGKLADCS   A   ELFIVEG+SAGGSAK  RNRS QA+LP
Sbjct: 352 NAAKEASRKKDGMEFSGLPGKLADCSSKNAEVRELFIVEGNSAGGSAKGGRNRSIQAILP 411

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHI 551
           LRGK++N       K  +NQ+I  ++ ALG      +    L+Y K+IIMTDADVDGAHI
Sbjct: 412 LRGKVINAEKNDKVKFLSNQEIQTIIHALGTGIGEDFNINKLKYHKIIIMTDADVDGAHI 471

Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK 611
           ++LLLTFFY+ +  LIE   +++  PPL++I  G    YA+++  K++IL +     K  
Sbjct: 472 STLLLTFFYRYLKPLIEYGFVYIAMPPLYKIVSGRTVEYAYNDLQKEEILSKL--EDKKI 529

Query: 612 IEI 614
           I I
Sbjct: 530 ISI 532


>gi|156063624|ref|XP_001597734.1| hypothetical protein SS1G_01930 [Sclerotinia sclerotiorum 1980]
 gi|154697264|gb|EDN97002.1| hypothetical protein SS1G_01930 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1846

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 146/740 (19%), Positives = 272/740 (36%), Gaps = 87/740 (11%)

Query: 2   TDDSIDLFSTLPPQSQGSSEKLKKSGEIPDS--------------PAFANQSASDNYDAS 47
           + ++    S  PP S+   +      +  ++                   +++++ Y   
Sbjct: 100 SSNTASQLSNTPPNSKKQKKAPAAKRQSSEALHDIENESIMEIEPKPKKTKTSTEQY--- 156

Query: 48  SIRILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDN 84
             + L  LE +  RP  YIG  +                          L+ +F E++ N
Sbjct: 157 --QKLTQLEHIIKRPDTYIGSVEKTEQTMWVFNSETKEMELRKVTFVPGLYKIFDEIMVN 214

Query: 85  AMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142
           A D          ++V +D   G ++V ++GRGIPVE H K       E+I   L  G  
Sbjct: 215 AADNKQNDPNMKNLKVVVDREKGEISVENDGRGIPVEIHEK-EKIYIPEMIFGHLLTGSN 273

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQN--TIFSQKFSRGIPLSPLEKKEKVR 200
           +D+   + +GG +G G  + N  S E  +     N    + Q ++  +      K    +
Sbjct: 274 YDDDEAKTTGGRNGYGAKLCNIFSTEFTLETQDSNSGKRYKQTWADNMSKMGKAKISSSK 333

Query: 201 NKRGTRITFRPDPKIFGD--KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
           N   TR+TF PD K F          A + +     A +   VK   +  +   +     
Sbjct: 334 NADFTRVTFTPDWKKFKMTGIDDDFEAMVKRRVYDMAGVVKGVKVYLNGTQIKLD----- 388

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSY 318
                 F   ++ Y +   + R    +   T   E         E   A  + + +  S+
Sbjct: 389 ------FKKYIEMYAKAINKERGSEDTSANTVIVE-DSKGHPKWEVGFAVSDGSFQQVSF 441

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPE 378
            N+I T  GGTH + +   +   + +     +N +   + ++ +       ++  I  P 
Sbjct: 442 VNSIATTSGGTHVNYIADQICDKLLE-VVKKRNPKGALLKANQVRNHIFLFVNCLITNPA 500

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
           F  QTK +L +   Q   +  L + F   + +     T+ +E ++  + ++      +  
Sbjct: 501 FTSQTKEQLTTRKPQFGSKCTLTEEFLKKIGK-----TEAVENILNFAAKKADLELAKSD 555

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR---NRSNQAVLPLRGK 495
             + +                  H   L + EGDSA G A   R   +     V PLRGK
Sbjct: 556 GNRRSRMNNPKLVDANLAGTKRGHECTLILTEGDSAKGLAVAGRAVLDPDRIGVFPLRGK 615

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDADVDGAHIASL 554
           +LNV  A  ++I  N +I ++ Q LG + ++ Y++   LRY  ++IM D D DG+HI  L
Sbjct: 616 LLNVRDASHDQIAKNAEIQNIKQFLGLKHKTVYKDTLGLRYGHLMIMADQDHDGSHIKGL 675

Query: 555 LLTFFYQEMYDLIEQK-HLFLISPPLFRITQG------TKSVYAHDEEHKQKILEEFKKH 607
           L+ F   +   L++          P+ ++ +G      T           ++  E     
Sbjct: 676 LINFLQVQYPSLLKLPEFFREFITPIVKVWKGPNPNKPTNLRSFFTIPEYEEWKEAHAND 735

Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667
                +   +KGLG   A   +    + +        I  +    +    + +K    KA
Sbjct: 736 --KGWKHKYYKGLGTSKAEDAQIYFSNLDVHLREFEVIKPEEE--EMLDLAFSK---KKA 788

Query: 668 DERFKFIQE--RASFIDDVG 685
           D R  ++      +++D   
Sbjct: 789 DSRKTWLGNFVPGTYLDHTD 808


>gi|19074112|ref|NP_584718.1| DNA TOPOISOMERASE II [Encephalitozoon cuniculi GB-M1]
 gi|19068754|emb|CAD25222.1| DNA TOPOISOMERASE II [Encephalitozoon cuniculi GB-M1]
          Length = 1144

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 146/683 (21%), Positives = 261/683 (38%), Gaps = 83/683 (12%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----------------------EKAL 74
           ++  + Y          +E + +RP  YIG  +                          L
Sbjct: 2   KTIEETYQKK-----TPVEHILLRPDTYIGSVEKEAQEMYVWDEENGRMVYKSIEYVPGL 56

Query: 75  HHLFSEVIDNAMDEVIAGY-ANLIEVSLDGNG-FLTVVDNGRGIPVENHPKFPNKSTLEI 132
           + +F E+I NA D  I     ++I+VS+D  G  ++V +NG+GIPV  H K  N    E+
Sbjct: 57  YKIFDEIIVNAADNKIRDPKMDVIKVSIDPEGNEISVYNNGKGIPVRIH-KEENVYVPEL 115

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN--TIFSQKFSRGIPL 190
           I   L     +++   +++GG +G G  + N  S E  V  A       + Q++   + +
Sbjct: 116 IFGNLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSKEFVVETADCEVKKYYRQRYRDNMGV 175

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKA--GFDAARLLKMTQSKAYLSGRVKTCWSCD 248
               +  +      T+ITF+PD + F          A L K     A +   VK  +  +
Sbjct: 176 KEDPEISRYTKGDFTKITFKPDLRRFKMTRLDDDIVALLRKRVYDLAGIVKDVKI-FLNE 234

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           K I  K      + +  PG    +                              E A+  
Sbjct: 235 KRIEVKGFKEYVKLYIPPGASVVHQ-----------------------VINDRWELALTT 271

Query: 309 CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVG 368
            EE  +  S+ N I T +GGTH + +   +   + +   + + ++ +S+    +      
Sbjct: 272 SEEQFQQVSFVNGICTTKGGTHVNHVVERIVDPLVE--AIQKKEKGLSVRPFQVRSCMFV 329

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
            ++  I  P F  QTK  L    +    +      F   +++N     K    +   ++ 
Sbjct: 330 FINSLIDNPAFDSQTKENLTLRASAFGSKCEPMGDFVKSIIKNTPIVQK----ITSFAKA 385

Query: 429 RLRRRKQREVNRKTAIRKLRLPGKLADCS-QNIAHGTELFIVEGDSAGGSAKQARN---R 484
           +  ++ ++    KT+        + A+ +  + +    L + EGDSA   A    +   R
Sbjct: 386 KQSQQLKKTDGAKTSRLSGIPKLEDANFAGTSRSKDCTLILTEGDSAKTLAVAGLSVVGR 445

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTD 543
               V PLRGK+LNV  A  ++I  N +I  + + LG +    Y +   LRY  V+IMTD
Sbjct: 446 DAYGVFPLRGKLLNVREASHKQIMENAEISSIKKILGLQHNKVYEDVSSLRYGHVMIMTD 505

Query: 544 ADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQGTKSVYAHDEEHKQKILE 602
            D DG+HI  L++ F       L++    L     P+ R T+  +          ++   
Sbjct: 506 QDHDGSHIKGLIINFLDHFYPSLLKIPGFLQEFITPIIRATKKGQVRDFFTLPEYEEF-- 563

Query: 603 EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKL 662
              K  +    I  +KGLG   ++  K+   +      ++          +    + NK 
Sbjct: 564 ---KKNEDGWNIKYYKGLGTSTSADAKQYFSNLPVH--VKSFTPLAAEDKELIDLAFNK- 617

Query: 663 MGTKADERFKFIQE--RASFIDD 683
              KAD R  ++      +F+D 
Sbjct: 618 --KKADARKTWLLNFAPGTFLDQ 638


>gi|221487518|gb|EEE25750.1| DNA topoisomerase II, putative [Toxoplasma gondii GT1]
          Length = 1688

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 159/788 (20%), Positives = 276/788 (35%), Gaps = 125/788 (15%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           M+    + F    P    +  + +K  +         ++    Y   S      LE + +
Sbjct: 1   MSSSEDEEFQNSSPSLSPARSRPEKGKKS---GGGKPKTIEQRYQKKS-----QLEHILL 52

Query: 61  RPGMYIGGTDE-----------------------KALHHLFSEVIDNAMD------EVIA 91
           RP  YIG T+                          L+ +  E++ NA D      E   
Sbjct: 53  RPDTYIGSTEVHTQALWVMEEGQETMVYKTINYVPGLYKIVDEILVNAADVKAREGEEQK 112

Query: 92  G--------YANLIEVSLDG-NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142
           G          + I++ ++  +G +++ ++G GIPV  H +       E+I   L     
Sbjct: 113 GKPLKPGARRMSAIKIDINKASGRISIWNDGEGIPVAIHQEH-KVYVPEMIFGQLLTSDN 171

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQN--TIFSQKFSRGIPLSPLEKKEKVR 200
           +D+S   ++GG +G G  + N  S E  V  A       F   +++ +      +     
Sbjct: 172 YDDSECRVTGGRNGYGAKLTNIFSREFTVECADGERKKKFKMTWTKNMEQKSESEISSYN 231

Query: 201 NKRGTRITFRPDPKIFGD--KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE----- 253
                +I+F PD   FG         + L K     A  SG  K   +  +         
Sbjct: 232 GTDYVKISFIPDFAKFGMTGFDDDSLSLLRKRAYDLAGTSGV-KVFLNGTRIDINSFSQY 290

Query: 254 --------KYGIPEKEEFYFPGGLKTYLQ---------TKLENRSLISSEIFTGKTEKKG 296
                   K   P KE+  F      + +            +   L   E      EKK 
Sbjct: 291 VDLYLGGRKSEKPSKEKEEFDESDDDWDEGPKRKKAAKKNGKKGELEDEEDVANGVEKKV 350

Query: 297 T----HRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN 351
                 +   E  I+  +       S+ N+I T +GGTH S +   L   I K    T+N
Sbjct: 351 IKIHDKQWRWEVVISSTDGGQFQQVSFVNSICTTKGGTHVSHVIEPLLAAIVK-KANTKN 409

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K  + I +  +       +S  I  P F  QTK  L +  A+   +  L D     +V++
Sbjct: 410 KGGMEIKAAHVKQHLWIFVSCLIVNPAFDSQTKETLTTKPAKFGSKCTLADKTIGQVVKS 469

Query: 412 PIEATKLLEWV------------IERSEERLRRRKQRE------------------VNRK 441
            I    +L               +     R      R                      +
Sbjct: 470 SIVENVVLWAQTKQQSVRAFSLSLLDCWRRGALSVDRPVFRLFVFVELRKQMKVGKTKGR 529

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILN 498
             +  +       D     +    L + EGDSA  S     +   R    V PLRGK+LN
Sbjct: 530 ERLAGIPKLEDANDAGGRHSQDCTLILTEGDSAKTSCLAGLSVVGRDRYGVFPLRGKLLN 589

Query: 499 VASAGSEKIRNNQQIMDLVQALGCR-TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557
           V  A  +++  N++I ++++ +G +          LRY  V+IMTD D DG+HI  LL+ 
Sbjct: 590 VRDASFKQLTENKEIQNILKIVGLQVNDRTEDTRGLRYGSVMIMTDQDHDGSHIKGLLIN 649

Query: 558 FFYQEMYDLIE-QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616
             +     L++ +  L   S P+ ++++       +     ++        G    +I  
Sbjct: 650 MMHHYWPQLLKCRGFLKAFSTPIVKVSKNNVEKAFYTIPEYEQWKRSCNTTG---WKIKY 706

Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           +KGLG     + KE   D +K  +  V      +  +    + NK    +A++R +++Q 
Sbjct: 707 YKGLGTSTDREFKEYFNDLDKHQIDFV--WSGQHDGELIDMAFNK---KRAEDRKRWLQS 761

Query: 677 R--ASFID 682
               +F+D
Sbjct: 762 YQEGTFVD 769


>gi|148361409|gb|ABQ59286.1| DNA gyrase subunit B [Mycoplasma gateae]
          Length = 532

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 206/543 (37%), Positives = 292/543 (53%), Gaps = 28/543 (5%)

Query: 89  VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148
            +AG+A+ I V+L  N F+ + DNGRG+PV+ HP    KS +E ILT LHAGGKFD+S Y
Sbjct: 1   AMAGFASEINVTLHPNNFIEIEDNGRGMPVDIHP-STQKSAVETILTVLHAGGKFDSSNY 59

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVR-NKRGTR 206
           ++SGGLHGVG SVVNALSD   V V R   +  QK+  G  P   L+   ++  N+ GTR
Sbjct: 60  KVSGGLHGVGASVVNALSDSFEVWVKRNGKLHYQKYENGGKPNEALKVIGEIDLNETGTR 119

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F PD  +      FD   +    +  AYL+  +K       +  +K        F F 
Sbjct: 120 IKFHPDYTVMDRI-DFDFGTISDHIKQVAYLNKGLKFNLIDLTKNTKKT-------FCFD 171

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT------------VEWAIAWCEENPE 314
           GG+  Y++   + +  I+S++           + +            VE A  + E    
Sbjct: 172 GGIVDYVKELNKGKKTINSDVIYALGSFTDVDKPSDESKQSKKVDILVEVAFQYNEAYQS 231

Query: 315 I-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSV 372
              SY N I T EGGTHESG   ++ R   KYAE  +  K +  I  +D     + ++S+
Sbjct: 232 TVISYANNIQTTEGGTHESGFYDSIVRIFNKYAEENKLFKASEKISKEDSKEGLIAVISI 291

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
              +P F GQTK+K  S +A+      + +  + YL +NP  A  ++   ++    RL  
Sbjct: 292 KHSDPVFDGQTKSKFGSANARYATNKVVSEVLERYLAENPNIAKNIINKCLQSQRARLAA 351

Query: 433 RKQREVNRK-TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
              +E +RK   +    LPGKLADCS   A   ELFIVEG+SAGGSAK  RNRS QA+LP
Sbjct: 352 NAAKEASRKKDGMEFSGLPGKLADCSSKNAEVRELFIVEGNSAGGSAKGGRNRSIQAILP 411

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHI 551
           LRGK++N       K  +NQ+I  ++ ALG      +    L+Y K+IIMTDADVDGAHI
Sbjct: 412 LRGKVINAEKNDKVKFLSNQEIQTIIHALGTGIGEDFNINKLKYHKIIIMTDADVDGAHI 471

Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK 611
           ++LLLTF Y+ +  LIE   +++  PPL++I  G    YA+++  K++IL +     K  
Sbjct: 472 STLLLTFLYRYLKPLIEYGFVYIAMPPLYKIVSGRTVEYAYNDLQKEEILSKL--EDKKN 529

Query: 612 IEI 614
           I I
Sbjct: 530 ISI 532


>gi|148361407|gb|ABQ59285.1| DNA gyrase subunit B [Mycoplasma arginini]
          Length = 535

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 205/546 (37%), Positives = 294/546 (53%), Gaps = 31/546 (5%)

Query: 89  VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148
            +AGYA  I V+L  + F+ + DNGRG+PV+ HP    KS +E ILT LHAGGKFD+S Y
Sbjct: 1   AMAGYATEISVTLHPDNFIEIEDNGRGMPVDIHP-STQKSAVETILTVLHAGGKFDSSNY 59

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTR 206
           ++SGGLHGVG SVVNALSD   V V R   +  QK+  G  P  PL+   +V   + GTR
Sbjct: 60  KVSGGLHGVGASVVNALSDSFEVWVKRNGKLHYQKYENGGKPQEPLKVISEVPEKETGTR 119

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F PD  +      FD   +    +  AYL+  +K   +   +  +K        + F 
Sbjct: 120 IKFHPDYTVMDKI-AFDFGTISDHIKQVAYLNKGLKFNITDLTKNTKKT-------YCFD 171

Query: 267 GGLKTYLQTKLENRSLISSEIFT--------GKTEKKGTHR-------GTVEWAIAWCEE 311
           GG+  Y++   + +  I++++           K  +   +          VE A  + E 
Sbjct: 172 GGIIDYVKELNKGKKTINTDVIYALGSFTDFDKPNEDDINNKPAKRVDILVEVAFQYNEA 231

Query: 312 NPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGI 369
                 SY N I T EGGTHE+G   ++ R   KYAE  +  +    I  +D     + +
Sbjct: 232 YQSTVISYANNIQTTEGGTHENGFYDSIVRIFNKYAEENKLLKGNEKISKEDSKEGLIAV 291

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           +S+   +P F GQTK+K  S +A+      + +  + YL +NP  A  ++   ++    R
Sbjct: 292 ISIKHSDPVFDGQTKSKFGSANARYATNKVVSEVLERYLAENPNVAKNIINKCLQSQRAR 351

Query: 430 LRRRKQREVNRK-TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
           L     +E +RK   +    LPGKLADCS   A   ELFIVEG+SAGGSAK  RNRS QA
Sbjct: 352 LAANAAKEASRKKDGMEFSGLPGKLADCSSKNAELRELFIVEGNSAGGSAKGGRNRSIQA 411

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           +LPLRGK++N       K  +NQ+I  ++ ALG      +    L+Y K+IIMTDADVDG
Sbjct: 412 ILPLRGKVINAEKNDKVKFLSNQEIQTIIHALGTGIGEDFNINKLKYHKIIIMTDADVDG 471

Query: 549 AHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           AHI++LLLTFFY+ +  LIE   +++  PPL++I  G  + YA+++  K++IL +     
Sbjct: 472 AHISTLLLTFFYRYLKPLIEYGFVYIAMPPLYKIVSGKVTEYAYNDLQKEEILAKL--ED 529

Query: 609 KGKIEI 614
           K  I I
Sbjct: 530 KKNISI 535


>gi|329942345|ref|ZP_08291155.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Chlamydophila psittaci Cal10]
 gi|313847583|emb|CBY16571.1| putative DNA gyrase subunit b or topoisomerase IV subunit b
           [Chlamydophila psittaci RD1]
 gi|325506566|gb|ADZ18204.1| DNA topoisomerase IV subunit B [Chlamydophila psittaci 6BC]
 gi|328815255|gb|EGF85243.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Chlamydophila psittaci Cal10]
 gi|328914217|gb|AEB55050.1| DNA topoisomerase II domain protein [Chlamydophila psittaci 6BC]
          Length = 602

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 182/647 (28%), Positives = 297/647 (45%), Gaps = 64/647 (9%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            Y  +S+  L  LE +R+R GMYIG        E  ++ LF EV+DNA+DE I GY   I
Sbjct: 3   TYTEASVVSLASLEHIRLRAGMYIGRLGDGSQVEDGIYTLFKEVVDNAIDEFIMGYGKTI 62

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            +    +  +TV D+GRGIP+               ++ ++ G K+    +  S GL+GV
Sbjct: 63  SI-FTDDSTITVRDSGRGIPLGKM---------IDCVSKINTGAKYTQDVFHFSVGLNGV 112

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+  VNALS++  V   R+       F +G+      ++   ++  GT ITF PDP IF 
Sbjct: 113 GLKAVNALSEKFTVRSVRKKKYHYATFYKGVLQDS--RQGSTKDPDGTEITFSPDPTIFT 170

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F+   L K  +   YL   ++   + +              F    GL    + ++
Sbjct: 171 NF-AFNDEFLRKKIRRYTYLHPGLEIICNNE-------------VFISQQGLLDLFKEEI 216

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRV 336
              +L     F             + +  +  E  +    S+ N   T +GG+H +  + 
Sbjct: 217 PEETLYPPIAF---------QNSELSFLFSHLETHSERYFSFVNGQETLDGGSHLAAFKE 267

Query: 337 ALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           A+ +GI +Y          +  S+D+    VG +++ I  P F  QTK KL +   +  +
Sbjct: 268 AVVKGINEYFG-------KNFTSNDIREGIVGCIAIKIASPIFESQTKNKLGNTQIRSGI 320

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++      L +N   +  LLE +    + R   +  ++  +    +      KL DC
Sbjct: 321 IKEVKSAIIQELKKNKSRSDLLLEKIKLNEKTRKNIQFIKQDLKDKQKKLHYKIPKLRDC 380

Query: 457 SQNIAHGT------ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
             +    +       +F+ EG+SA  S   +RN   QAV  LRGK +NV S   EK+  N
Sbjct: 381 KFHYNERSLYGEASSIFVTEGESASASILSSRNPLTQAVFSLRGKPMNVFSLEEEKMYKN 440

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
            ++  L  ALG    S      LRY K+I+ TDADVDG HI +LL+TFF +    ++E +
Sbjct: 441 DELFYLATALGITKNSTQH---LRYNKIILATDADVDGMHIRNLLITFFLKTFLSVVENQ 497

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           HLF++  PLF++     ++Y + ++ K + +++  K  +  IE++RFKGLGE+   + K 
Sbjct: 498 HLFILETPLFKVRYKDTTLYCYSDQEKTQAIQKLGKK-EAHIEVTRFKGLGEISPKEFK- 555

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           T + A+ R L  V I+   +     Q      MG    ER +FI + 
Sbjct: 556 TFIGADMR-LTPVTISSLESLDSLLQ----FYMGKNTKERKQFIMDN 597


>gi|5121|emb|CAA27857.1| unnamed protein product [Schizosaccharomyces pombe]
          Length = 1431

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 136/666 (20%), Positives = 251/666 (37%), Gaps = 68/666 (10%)

Query: 48  SIRILEGLEPVRMRPGMYIGGTDE-----------------------KALHHLFSEVIDN 84
             + L   E V  RP  YIG  +                          L+ +F E+I N
Sbjct: 23  QYQRLTPREHVLRRPDTYIGSIEPTTSEMWVFDSEKNKLDYKAVTYVPGLYKIFDEIIVN 82

Query: 85  AMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142
           A D  +     N ++V+LD     +++ +NG+GIP+E H K       E+I   L     
Sbjct: 83  AADNKVRDPNMNTLKVTLDPEANVISIYNNGKGIPIEIHDK-EKIYIPELIFGNLLTSSN 141

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQN--TIFSQKFSRGIPLSPLEKKEKVR 200
           +D++  +++GG +G G  + N  S E  V  A +     + Q +   +          ++
Sbjct: 142 YDDNQKKVTGGRNGYGAKLCNIFSTEFVVETADKERMKKYKQTWYDNMSRKSEPVITSLK 201

Query: 201 NKR-GTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
                T+ITF+PD              + + +     A      K   + ++        
Sbjct: 202 KPDEYTKITFKPDLAKFGMDKIDDDMVSIIKRRIYDMAGTVRETKVYLNNERI------- 254

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS 317
                     G K Y++  L + +    E      E         + A A  +   +  S
Sbjct: 255 -------SISGFKKYVEMYLASDTKPDEEPPRVIYE---HVNDRWDVAFAVSDGQFKQVS 304

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREP 377
           + N I T  GGTH + +   +   I +  +    K  +   +  +       ++  I  P
Sbjct: 305 FVNNISTIRGGTHVNYVANKIVDAIDEVVKKENKKAPVK--AFQIKNYVQVFVNCQIENP 362

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
            F  QTK  L +  +    +  L D F   + +     + ++E V++ +  +  ++  + 
Sbjct: 363 SFDSQTKETLTTKVSAFGSQCTLSDKFLKAIKK-----SSVVEEVLKFATAKADQQLSKG 417

Query: 438 VNRKTAIRKLRLPGKLAD-CSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLR 493
                +        + A+      +H   L + EGDSA   A    +   R    V PLR
Sbjct: 418 DGGLRSRITGLTKLEDANKAGTKESHKCVLILTEGDSAKSLAVSGLSVVGRDYYGVFPLR 477

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIA 552
           GK+LNV  A   +I NN++I  + + +G   +  Y +   LRY  ++IMTD D DG+HI 
Sbjct: 478 GKLLNVREASHSQILNNKEIQAIKKIMGFTHKKTYTDVKGLRYGHLMIMTDQDHDGSHIK 537

Query: 553 SLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK 611
            L++ +       L++    L     P+ + T+G +    +     +   E    +    
Sbjct: 538 GLIINYLESSYPSLLQIPGFLIQFITPIIKCTRGNQVQAFYTLPEYEYWKE--ANNNGRG 595

Query: 612 IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERF 671
            +I  +KGLG      +K    D ++       + +     +  + +  K    KAD R 
Sbjct: 596 WKIKYYKGLGTSDHDDMKSYFSDLDRHMKYFHAMQE--KDAELIEMAFAK---KKADVRK 650

Query: 672 KFIQER 677
           ++++  
Sbjct: 651 EWLRTY 656


>gi|300176867|emb|CBK25436.2| unnamed protein product [Blastocystis hominis]
          Length = 1573

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 154/704 (21%), Positives = 270/704 (38%), Gaps = 74/704 (10%)

Query: 15  QSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD---- 70
           ++   +    ++ +   S    + +  + Y     + L+  E V  RP MYIG  D    
Sbjct: 18  KTTEVNSDNSRTSDKTASQRRKSLTVEEKY-----QKLDPREHVLKRPDMYIGSVDKVTQ 72

Query: 71  -------------------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTV 109
                                  + +F E++ NA D        + I V +D + G +TV
Sbjct: 73  EMWVYDREKKGLVYRNITYVPGFYKIFDEILVNAADNKHNDPTMDTIRVDIDRDQGRITV 132

Query: 110 VDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDEL 169
            +NG+GIPV  H K        +I   L  GG FD++  +++GG +G+G  + N  S E 
Sbjct: 133 WNNGKGIPVVIH-KEEKVYVPSLIFGLLLTGGNFDDNEKKVTGGRNGLGAKLTNIYSLEF 191

Query: 170 HVTVAR--QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAA 225
            V  A   +   F Q +   +        +K R K  T+I++ PD K+F           
Sbjct: 192 SVETADKKEGKEFKQVWFDNMSRCNDPVIKKYRGKEYTKISYVPDLKLFQMDSIDDDTLG 251

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
            L K     A ++      +   + +  K      + +   G          E +     
Sbjct: 252 LLEKRVYDIAGVTDSSLKVYLNGERLNVKNFESYIKMYQNEGAT--------ETKENKVV 303

Query: 286 EIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKY 345
               G+           E  +   + + +  S+ N+I T +GG H   +   ++  +   
Sbjct: 304 YCNAGE---------RWEVGVGVSDGHFQQVSFVNSICTSKGGKHVDYIAQKVSDYL--- 351

Query: 346 AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
             + + K    I    +       ++  I  P F  Q+K  L  +         L + F 
Sbjct: 352 LPVFKKKLKKDIKLTMVKQYLYIFVNCKIENPTFDSQSKETLTKVSKGWGSLPVLSEQFL 411

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS-QNIAHGT 464
             + +       +++ V   S  +  +  +++  +KTA +        A+ +    +   
Sbjct: 412 KKVEKC-----GIVDAVSVFSRFKEDQMLKKQSGKKTARKLNIPKLDDANFAGTRHSKDC 466

Query: 465 ELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
            L I EGDSA        +   R    V PLRGK+LNV       +  N++I +LVQ LG
Sbjct: 467 TLIITEGDSAKSLVVGGLSIIGRDYYGVFPLRGKMLNVRDVSRAAVIKNEEIHNLVQILG 526

Query: 522 CRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
            +  + Y +   LRY K++IM D D DG+HI  L++ FF      L++   L     P+ 
Sbjct: 527 LKFDTVYDDVSSLRYGKLVIMADQDYDGSHIKGLVINFFQVFWPSLLKLNFLQQFITPIV 586

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           + T+G +S      +  +  L+     GKG   I  +KGLG     + KE   + ++  +
Sbjct: 587 KATKGRQSFMFFTLQQYKNWLQT-HNEGKGYY-IKYYKGLGTSTPQEGKEYFSNLSRHLV 644

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFI--QERASFID 682
               I  D +S         K    +  ER ++I   +   +ID
Sbjct: 645 PFKSITDDESS--HLDMLFRK---KRVAERKEWINQYQPGDYID 683


>gi|15618625|ref|NP_224911.1| DNA topoisomerase IV subunit B [Chlamydophila pneumoniae CWL029]
 gi|15836247|ref|NP_300771.1| DNA topoisomerase IV subunit B [Chlamydophila pneumoniae J138]
 gi|16752325|ref|NP_444583.1| DNA topoisomerase IV subunit B [Chlamydophila pneumoniae AR39]
 gi|33242074|ref|NP_877015.1| DNA topoisomerase IV subunit B [Chlamydophila pneumoniae TW-183]
 gi|4377019|gb|AAD18854.1| DNA Gyrase Subunit B [Chlamydophila pneumoniae CWL029]
 gi|7188970|gb|AAF37926.1| DNA gyrase, subunit B [Chlamydophila pneumoniae AR39]
 gi|8979087|dbj|BAA98922.1| DNA gyrase subunit B [Chlamydophila pneumoniae J138]
 gi|33236584|gb|AAP98672.1| DNA gyrase subunit B [Chlamydophila pneumoniae TW-183]
          Length = 602

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 181/645 (28%), Positives = 294/645 (45%), Gaps = 62/645 (9%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           Y  +SI  L  L+ +R+R GMYIG        E  ++ LF EV+DN +DE I G+   ++
Sbjct: 4   YTEASILSLASLDHIRLRAGMYIGRLGNGSQKEDGIYTLFKEVVDNGIDEFIMGHGKSLK 63

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           +S   +  +++ D GRGIP+           L   ++ ++ G K+    +  S GL+GVG
Sbjct: 64  IS-ASDKQISIQDQGRGIPLGK---------LIDCVSKINTGAKYTQDVFHFSVGLNGVG 113

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +  VNALS+   V   R+       F RG+      K+   ++  GT ++F PDP IF +
Sbjct: 114 LKAVNALSEIFSVRSVRKKKYHLATFHRGVLQES--KQGSTKDPDGTFVSFTPDPSIFPE 171

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L    +   YL   ++  ++ +              F    GLK     ++ 
Sbjct: 172 FT-FNHDFLKDKIRQYTYLHSGLEIRFNDE-------------VFISHNGLKDLFDAEIT 217

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
              L S      + E        +E             S+ N   T +GGTH +  + A+
Sbjct: 218 EPPLYSP--LFFQNEDLTFIFSHLEGNT------ERYFSFVNGQETLDGGTHLTAFKEAI 269

Query: 339 TRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +G+ ++   T        +S+D+    VG +++ I  P F  QTK KL +   + ++  
Sbjct: 270 VKGVNEFFGKT-------FVSNDIREGIVGCIAIKIASPIFESQTKNKLGNTQIRSSLIK 322

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            +++     L ++ +    LLE +    + R   +  ++  +    +      KL DC  
Sbjct: 323 DVKEAIVQALRKDKVAPELLLEKIKFNEKTRKNIQFIKQDLKSKQKKVHYKIPKLRDCKF 382

Query: 459 NIAHGT------ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           +    +       +F+ EG+SA  S   +RN   QAV  LRGK +NV S    K+  N +
Sbjct: 383 HYNDRSLYGEASSIFLTEGESASASILASRNPLTQAVFSLRGKPMNVFSLEETKMYKNDE 442

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           +  L  ALG           LRY KVI+ TDADVDG HI +LL+TFF + +  L+E  HL
Sbjct: 443 LFYLATALGITQNEIQH---LRYNKVILATDADVDGMHIRNLLITFFLKTLLPLVENNHL 499

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           F++  PLF++   T ++Y + E+ K + L++F K     +EI+RFKGLGE+   +     
Sbjct: 500 FILETPLFKVRNKTTTLYYYSEQEKMQALQQFGKKD-SSLEITRFKGLGEISPKEFAA-F 557

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           +    R L  V I     SL+     +   MG    ER +FI + 
Sbjct: 558 IGPEIR-LTPVTI----TSLESISSILQFYMGKNTKERKQFIMDN 597


>gi|237830295|ref|XP_002364445.1| DNA topoisomerase II, putative [Toxoplasma gondii ME49]
 gi|211962109|gb|EEA97304.1| DNA topoisomerase II, putative [Toxoplasma gondii ME49]
 gi|221507315|gb|EEE32919.1| DNA topoisomerase II, putative [Toxoplasma gondii VEG]
          Length = 1687

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 160/788 (20%), Positives = 280/788 (35%), Gaps = 125/788 (15%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           M+    + F    P    +  + +K  +         ++    Y   S      LE + +
Sbjct: 1   MSSSEDEEFQNSSPSLSPAHSRPEKGKKS---GGGKPKTIEQRYQKKS-----QLEHILL 52

Query: 61  RPGMYIGGTDE-----------------------KALHHLFSEVIDNAMD------EVIA 91
           RP  YIG T+                          L+ +  E++ NA D      E   
Sbjct: 53  RPDTYIGSTEVHTQALWVMEEGQETMVYKTINYVPGLYKIVDEILVNAADVKAREGEEQK 112

Query: 92  G--------YANLIEVSLDG-NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142
           G          + I++ ++  +G +T+ ++G GIPV  H +       E+I   L     
Sbjct: 113 GKPLKPGARRMSAIKIDINKASGRITIWNDGEGIPVAIHQEH-KVYVPEMIFGQLLTSDN 171

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQN--TIFSQKFSRGIPLSPLEKKEKVR 200
           +D+S   ++GG +G G  + N  S E  V  A       F   +++ +      +     
Sbjct: 172 YDDSECRVTGGRNGYGAKLTNIFSREFTVECADGERKKKFKMTWTKNMEQKSESEISSYN 231

Query: 201 NKRGTRITFRPDPKIFGD--KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE----- 253
                +I+F PD   FG         + L K     A  SG  K   +  +         
Sbjct: 232 GTDYVKISFIPDFAKFGMTGFDDDSLSLLRKRAYDLAGTSGV-KVFLNGTRIDINSFSQY 290

Query: 254 --------KYGIPEKEEFYFPGGLKTYLQ---------TKLENRSLISSEIFTGKTEKKG 296
                   K   P KE+  F      + +            +   L   E      EKK 
Sbjct: 291 VDLYLGGRKSEKPSKEKEEFDESDDDWDEGPKRKKAAKKNGKKGELEDEEDVANGVEKKV 350

Query: 297 TH----RGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN 351
                 +   E  I+  +       S+ N+I T +GGTH S +   L   I K    T+N
Sbjct: 351 IKIHDKQWRWEVVISSTDGGQFQQVSFVNSICTTKGGTHVSHVIEPLLAAIVK-KANTKN 409

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K  + I +  +       +S  I  P F  QTK  L +  A+   +  L D     +V++
Sbjct: 410 KGGMEIKAAHVKQHLWIFVSCLIVNPAFDSQTKETLTTKPAKFGSKCTLADKTIGQVVKS 469

Query: 412 PIEATKLLEWVIERSEER------------------------------LRRRKQREVNRK 441
            I    +L    ++   R                               ++ K  +   +
Sbjct: 470 SIVENVVLWAQTKQQSVRAFSLSLLDCWRLGALSVDRPVFRLLVFVELRKQMKVGKTKGR 529

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILN 498
             +  +       D     +    L + EGDSA  S     +   R    V PLRGK+LN
Sbjct: 530 ERLAGIPKLEDANDAGGRHSQDCTLILTEGDSAKTSCLAGLSVVGRDRYGVFPLRGKLLN 589

Query: 499 VASAGSEKIRNNQQIMDLVQALGCR-TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557
           V  A  +++  N++I ++++ +G +          LRY  V+IMTD D DG+HI  LL+ 
Sbjct: 590 VRDASFKQLTENKEIQNILKIVGLQVNDRTEDTRGLRYGSVMIMTDQDHDGSHIKGLLIN 649

Query: 558 FFYQEMYDLIE-QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616
             +     L++ +  L   S P+ ++++       +     ++        G    +I  
Sbjct: 650 MMHHYWPQLLKCRGFLKAFSTPIVKVSKNNVEKAFYTIPEYEQWKRSCNTTG---WKIKY 706

Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           +KGLG     + KE   D +K  +  V      +  +    + NK    +A++R +++Q 
Sbjct: 707 YKGLGTSTDREFKEYFNDLDKHQIDFV--WSGQHDGELIDMAFNK---KRAEDRKRWLQS 761

Query: 677 R--ASFID 682
               +F+D
Sbjct: 762 YQEGTFVD 769


>gi|282879060|ref|ZP_06287820.1| DNA topoisomerase IV subunit B [Prevotella buccalis ATCC 35310]
 gi|281298794|gb|EFA91203.1| DNA topoisomerase IV subunit B [Prevotella buccalis ATCC 35310]
          Length = 670

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 192/730 (26%), Positives = 313/730 (42%), Gaps = 115/730 (15%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           MTD +     +    +  S+            P  A +  S  Y   +IR L  +E VR 
Sbjct: 1   MTDKNKQELQSTNHNNTASA------------PVGAEEIVS--YTDDNIRHLSDMEHVRT 46

Query: 61  RPGMYIGGTD-----EKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRG 115
           RPGMYIG        E  ++ L  EVIDN++DE      + IE+ ++ N  ++V D GRG
Sbjct: 47  RPGMYIGRLGDGNLPEDGIYVLLKEVIDNSIDEFKMKSGDRIEIDVEENLRVSVRDYGRG 106

Query: 116 IPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR 175
           IP            L   ++ L+ GGK+D+  ++ S GL+GVG+  VNALS    V   R
Sbjct: 107 IPQGK---------LVEAVSMLNTGGKYDSKAFKKSVGLNGVGLKAVNALSAHFEVKSYR 157

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  + S  F +G   +     +K +++ GT + F PD  +F +   F    +  M ++  
Sbjct: 158 EGKVRSITFEKGEIKTDQT--DKTKDETGTYVYFEPDNTLFKNY-SFHDDIVETMLRNYT 214

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           YL+  +   ++  +                  GL+  L   +    L       G     
Sbjct: 215 YLNAGLTIMYNGRRI-------------KSRNGLEDLLNDNMTTDGLYPIVHVIGD---- 257

Query: 296 GTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA 354
                 +E A     +  E    + N   T +GGTH+S  +  + + IK++ +       
Sbjct: 258 -----DIEIAFTHTNQYGEEYHSFVNGQHTTQGGTHQSAFKEHIAKTIKEFYD------- 305

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR-------TVENALRDPFDHY 407
            +    D+    V  +++ + EP F  QTK KL S             V + ++   D+Y
Sbjct: 306 KNYEYTDIRNGLVAAVAINVEEPVFESQTKIKLGSTLMAPGGETINKYVGDFIKREVDNY 365

Query: 408 LVQNPIEATKLLEWVIERSE-ERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGT-- 464
           L  +  +   +LE  I+ SE ER       ++ R+ A +      KL DC  + +     
Sbjct: 366 LHIHKEDCADVLETKIKASEHERKAMAGVTKLARERAKKANLHNKKLRDCRIHFSDEKND 425

Query: 465 -----ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
                 +FI EGDSA GS  ++R+ + QAV  LRGK LN      + +  N++   L  A
Sbjct: 426 RKEESCIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSYGLTKKVVYENEEFNLLQAA 485

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           L            LRY KVI+ TDADVDG HI  L++TFF Q   +LI++ H++++  PL
Sbjct: 486 LDIEDGLDT----LRYNKVIVATDADVDGMHIRLLIITFFLQFFPELIKKGHVYVLQTPL 541

Query: 580 FRIT------QGTKSV-------------------YAHDEEHKQKILEEFKKHGKGKIEI 614
           FR+       +  + +                   Y + +E +Q+ +++         EI
Sbjct: 542 FRVRNRRTKIKNKQVIADADASRDKKERKSDFITRYCYSDEERQEAIKDLGPE----PEI 597

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
           +RFKGLGE+   +     +  + R L +V ++K+       Q  +   MG    ER  FI
Sbjct: 598 TRFKGLGEISPDEFVH-FIGPDMR-LEQVTLHKN----DQVQKLLEYYMGKNTMERQNFI 651

Query: 675 QERASFIDDV 684
            +     +D+
Sbjct: 652 IDNLVVEEDL 661


>gi|62184674|ref|YP_219459.1| DNA topoisomerase IV subunit B [Chlamydophila abortus S26/3]
 gi|62147741|emb|CAH63485.1| putative DNA gyrase subunit b or topoisomerase IV subunit b
           [Chlamydophila abortus S26/3]
          Length = 602

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 180/647 (27%), Positives = 296/647 (45%), Gaps = 64/647 (9%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            Y  +S+  L  LE +R+R GMYIG        E  ++ LF EV+DNA+DE I GY   +
Sbjct: 3   TYTEASVVSLASLEHIRLRAGMYIGRLGDGSQVEDGIYTLFKEVVDNAIDEFIMGYGKTL 62

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V    +  +TV D+GRGIP+    +          ++ ++ G K+    +  S GL+GV
Sbjct: 63  -VIFSDDSTITVRDSGRGIPLGKMIE---------CVSKINTGAKYTQDVFHFSVGLNGV 112

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+  VNALS++  V   R+       F +GI      ++   ++  GT ITF PDP IF 
Sbjct: 113 GLKAVNALSEKFTVRSVRKKKYHYAIFHKGILQDS--RQGSTKDPDGTEITFSPDPTIFT 170

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F+   L K      YL   ++  ++ +              F    GL    + ++
Sbjct: 171 NF-SFNDEFLRKKIHRYTYLHPGLEIIYNNE-------------AFVSQQGLLDLFKEEI 216

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRV 336
              +L     F             + +  +  +       S+ N   T +GG+H +  + 
Sbjct: 217 PEETLYPPLAFH---------NAELSFLFSHLDTHTERYFSFVNGQETIDGGSHLAAFKE 267

Query: 337 ALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           A+ +GI +Y          +  S+D+    VG +++ I  P F  QTK KL +   +  +
Sbjct: 268 AIVKGINEYFG-------KNFTSNDIREGIVGCIAIKIASPIFESQTKNKLGNTQIRSGI 320

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++      L +N   A  LL+ +    + R   +  ++  +    +      +L DC
Sbjct: 321 IKEVKSAIIQELKKNKSYADLLLDKIKLNEKTRKNIQFIKQDLKDKQKKLHYKIPQLRDC 380

Query: 457 SQNIAHGT------ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
             +    +       +F+ EG+SA  S   +RN   QAV  LRGK +NV S   EK+  N
Sbjct: 381 KFHYNERSLYGEASSIFVTEGESASASILSSRNPLTQAVFSLRGKPMNVFSLEEEKVYKN 440

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
            ++  L  ALG    S      LRY K+I+ TDADVDG HI +LL+TFF +    ++E  
Sbjct: 441 DELFYLATALGITKNSTQH---LRYNKIILATDADVDGMHIRNLLITFFLKTFVSVVENH 497

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           HLF++  PLF++     ++Y + ++ K + +++  K  +  +E++RFKGLGE+   + K 
Sbjct: 498 HLFILETPLFKVRYKDTTLYCYSDQEKTQAIQKLGKK-EAHLEVTRFKGLGEISPKEFK- 555

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           T + A+ R L  V I+   +     Q      MG    ER +FI + 
Sbjct: 556 TFIGADMR-LTPVTISSSESLESLLQ----FYMGKNTKERKQFIMDN 597


>gi|219121760|ref|XP_002181228.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407214|gb|EEC47151.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1143

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 144/679 (21%), Positives = 265/679 (39%), Gaps = 73/679 (10%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE---------------------KAL 74
             ++  + Y     + +  LE + +RP  YIG  +                        L
Sbjct: 1   KKKTVEETY-----QKMSQLEHILIRPDTYIGSVEPHTKLMFILEDDKIIEKEITYTPGL 55

Query: 75  HHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
             +F E++ NA D        + ++V+++     +++ +NG+GIP+  H +       E+
Sbjct: 56  FKIFDEIVVNAADNKQRDPNMDKLDVTINAEENVISIQNNGKGIPIVMHKEH-GIYVPEL 114

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT--IFSQKFSRGIPL 190
           IL  L  G  FD+   + +GG +G G  + N  S E  V  A       + Q F   +  
Sbjct: 115 ILGHLLTGSNFDDGERKTTGGRNGYGAKLANVFSTEFVVECADTENGLKYRQVFRENMKQ 174

Query: 191 SPLEKK-----EKVRNKRGTRITFRPDPKIFGDKA--GFDAARLLKMTQSKAYLSGRVKT 243
                      ++++     +ITF PD + F            L K     A    +   
Sbjct: 175 KDKPVVKALTAKEMKAADYVKITFSPDLERFKMDRLDEDTVGLLSKRAYDIAGTMSQSSG 234

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
                    +K  I   ++F             +     I+            + R  V 
Sbjct: 235 KKLLVSLNGKKLPIKSFKDF-------------IGVFEGINKPSAFETVRLANSDRWEVG 281

Query: 304 WAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLM 363
            A +  +   +  S+ N+I T +GGTH   +   +   + K A   +NK+   + +  + 
Sbjct: 282 VAAS-DDAAMKQVSFVNSISTSKGGTHVQYIADQVASHLAK-AITKKNKKGGEVKASFIK 339

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                 ++  I  P F  QTK  + S          L D F   L +     + ++E V+
Sbjct: 340 NHLAIFVNCLIENPAFDSQTKEFMTSKPKDFGSTCKLSDSFLKKLEK-----SAIVENVL 394

Query: 424 ERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS-QNIAHGTELFIVEGDSAGGSAKQAR 482
             S+ R R+  + +  +K A          A+ +    +    L I EGDSA   A    
Sbjct: 395 AFSQFRDRQALKNKSGKKKAKLTGIDKLDDANFAGTAKSKDCTLIITEGDSAKSLAMAGL 454

Query: 483 N---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYE 536
           +   R    V PLRGK LNV  A  + + +N++I ++V+ +G + ++ Y E +   LRY 
Sbjct: 455 SVIGRDYYGVFPLRGKPLNVRDAPIKAVTSNEEIKNVVEIMGLKFQTVYDETNIKQLRYG 514

Query: 537 KVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQGTKSVYAHDEE 595
            ++IM D D DG+HI  L++ F +     L++    L     P+ ++++G KS    +  
Sbjct: 515 HLMIMADQDNDGSHIKGLIINFIHNFWPSLLDIPGFLQQFITPIVKVSKGQKSQSFFNLP 574

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             +  LE   K+G    +I  +KGLG   +++ KE   + +   +L   +    +     
Sbjct: 575 EYENWLESTGKNG-HGWKIKYYKGLGTSTSAEAKEYFSNLDLHEVLPDTVQSGND---LI 630

Query: 656 QDSINKLMGTKADERFKFI 674
                K    + ++R +++
Sbjct: 631 DMVFRK---NRVEDRKQWL 646


>gi|281422343|ref|ZP_06253342.1| putative DNA topoisomerase IV, B subunit [Prevotella copri DSM
           18205]
 gi|281403574|gb|EFB34254.1| putative DNA topoisomerase IV, B subunit [Prevotella copri DSM
           18205]
          Length = 669

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 191/715 (26%), Positives = 302/715 (42%), Gaps = 102/715 (14%)

Query: 16  SQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD----- 70
           S+  +    +     +      +     Y   +IR L  +E VR RPGMYIG        
Sbjct: 2   SEEKNLGNSELNAADELTNAPQEQQPVEYTDDNIRHLSDMEHVRTRPGMYIGRLGDGNLP 61

Query: 71  EKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTL 130
           E  ++ L  EV+DN++DE   G    +E+ ++ N  ++V D GRGIP            L
Sbjct: 62  EDGIYVLLKEVVDNSIDEFKMGAGARLEIDIEDNLRVSVRDYGRGIPQGK---------L 112

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
              ++ L+ GGK+D+  ++ S GL+GVG+  VNALS    V   R   +   KF +GI  
Sbjct: 113 VEAVSVLNTGGKYDSKAFKKSVGLNGVGVKAVNALSSHFEVKSYRDGKVRHLKFEKGILK 172

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           S     E   ++ GT I F PD  +F +   F    +  M ++  YL+  +    +  + 
Sbjct: 173 SDT--MEDTEDENGTFIFFEPDNTLFKNY-SFHDDFVETMLRNYTYLNTGLTIMHNGRRI 229

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                            GL+  L   + N  L       G+          +E A     
Sbjct: 230 -------------LSRHGLQDLLSDNMTNEGLYDIVHMKGE---------DIEIAFTHTN 267

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGI 369
           +   E  S+ N   T +GGTH+S  +  + + IK++               D+    V  
Sbjct: 268 QYGEEYYSFVNGQHTTQGGTHQSAFKEHIAKTIKEFYG--------KYEYADIRNGLVAA 319

Query: 370 LSVFIREPEFAGQTKTKLVSLDA--------QRTVENALRDPFDHYLVQNPIEATKLLEW 421
           +++ + EP F  QTK KL S            + V + L+   D+YL  +   A  L   
Sbjct: 320 IAINVEEPVFESQTKIKLGSTTMTPNGGETINKYVGDFLKKEVDNYLHIHKDVAEVLENK 379

Query: 422 VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAH-------GTELFIVEGDSA 474
           + E   ER       ++ R+ A +      KL DC  + +         + +FI EGDSA
Sbjct: 380 IKESERERKAMAGVTKLARERAKKANLHNRKLRDCRIHFSDAKNERKEESSIFITEGDSA 439

Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
            GS  ++R+ + QAV  LRGK LN      + +  N++   L  AL          + LR
Sbjct: 440 SGSITKSRDVNTQAVFSLRGKPLNSFGLTKKVVYENEEFNLLQAALDIEDGL----DSLR 495

Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT------QGTK- 587
           Y KVI+ TDADVDG HI  L++TFF Q   DLI++ H++++  PLFR+       +  + 
Sbjct: 496 YNKVIVATDADVDGMHIRLLIITFFLQFFPDLIKKGHVYVLQTPLFRVRNKRTKIKNKQA 555

Query: 588 ------------------SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
                             + Y + +E +Q+ + +         EI+RFKGLGE+   +  
Sbjct: 556 VADADAKLGSKEKKSDFITHYCYSDEERQQAIRDLGPD----PEITRFKGLGEISPDEFA 611

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
              +  + R L +V ++K        Q  +   MG    ER  FI E     +D+
Sbjct: 612 H-FIGPDMR-LEQVTLHK----TDQVQKLLEYYMGKNTMERQNFIIENLVIEEDI 660


>gi|255729204|ref|XP_002549527.1| DNA topoisomerase 2 [Candida tropicalis MYA-3404]
 gi|240132596|gb|EER32153.1| DNA topoisomerase 2 [Candida tropicalis MYA-3404]
          Length = 1398

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 150/718 (20%), Positives = 267/718 (37%), Gaps = 90/718 (12%)

Query: 14  PQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD--- 70
           P S  ++           S      SAS+ Y     + L  LE +  RP  YIG  +   
Sbjct: 111 PLSDSTNNTSTTPSTKSGSSTPNPASASETY-----QKLSQLEHILKRPDTYIGSVEKTK 165

Query: 71  --------------------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLT 108
                                  L+ +F E++ NA D  I       I+V +D  N  + 
Sbjct: 166 MEMWCFDAETESMVFKEVTIVPGLYKIFDEILVNAADNKIRDPTMKNIKVKIDPENNTIE 225

Query: 109 VVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDE 168
           V+++G+GIPVE H K  N    E+I   L     +D++  +++GG +G G  + N  S +
Sbjct: 226 VMNDGKGIPVEMHTK-ENMYIPELIFGNLLTSSNYDDNQKKVTGGRNGFGAKLCNIFSTQ 284

Query: 169 LHVTVAR--QNTIFSQKFSRGIPLSPLEKKEK-VRNKRGTRITFRPDPKIFGDK--AGFD 223
             V  A      ++ Q ++  +      K       K  T+ITF+PD   F         
Sbjct: 285 FEVETADLNTGKLYKQVWTDNMTNVAKPKITTLRTKKEYTKITFKPDLAKFDMDSLDEDL 344

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
            A L +                +  +                    K+Y++  ++     
Sbjct: 345 LAVLRRRVYDLCGTVKNCNIYLNDKR--------------LSISSFKSYVEMYVKAIRER 390

Query: 284 SSEIFTGKTEKKG-------THRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRV 336
           S E  T     K              E A A  +      S+ N+I T  GGTH   +  
Sbjct: 391 SPEPLTEDGTSKNFTTIVHEVFNERWEVAFAVSDGTFNQVSFVNSIATTAGGTHVKYVSD 450

Query: 337 ALTRGIKK-YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            +   + +  ++  + K+ + I   ++  +    ++  I  P F  QTK +L +  +Q  
Sbjct: 451 QIINKLVETLSKKEKGKKKLMIKPQEVRDNMFLFINCLIENPAFTSQTKEQLTTKVSQFG 510

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
            +         ++  + +    L   ++++        + + + +    RK R+ G+++ 
Sbjct: 511 GKQ-------KFVANDNLINRILKTSIVDKIRAIANANEDKALQKADGSRKSRIKGQVSL 563

Query: 456 CSQNIA-----HGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKI 507
              N A     H   L + EG SA   A    +   R      PLRGK+LNV  A +++I
Sbjct: 564 VDANKAGTKLGHNCTLILTEGLSALNLAVAGLSVVGRDYYGCFPLRGKLLNVREASADQI 623

Query: 508 RNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
             N +I  L Q +G + +  Y  E+   LRY  ++IMTD D DG+HI  L++ F      
Sbjct: 624 SKNAEINALKQIIGLQHKKHYTAENIKQLRYGHIMIMTDQDQDGSHIKGLIINFLETSFP 683

Query: 565 DLIEQ-KHLFLISPPLFRITQG------TKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
            L+E    L     P+ ++T         + +  +     +   +   +  + +     +
Sbjct: 684 GLLEIPGFLLEFITPIVKVTIKTRGSGNNRVIPFYTMPEFEAWRD--GEGSQCRWTHKYY 741

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675
           KGLG     + +E     ++       +            + +K    KADER  ++Q
Sbjct: 742 KGLGTSTPMEAREYFTALDRHLKKFHALQG--EDASYIDLAFSK---KKADERKDWLQ 794


>gi|255718235|ref|XP_002555398.1| KLTH0G08338p [Lachancea thermotolerans]
 gi|238936782|emb|CAR24961.1| KLTH0G08338p [Lachancea thermotolerans]
          Length = 1436

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 141/687 (20%), Positives = 266/687 (38%), Gaps = 66/687 (9%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE----------------------- 71
            A +SAS+ Y     + +  LE +  RP  Y+G  +                        
Sbjct: 2   SAEKSASERY-----QKISQLEHILKRPDTYVGSVEIQEQTQWIHDEATDCMVEKNVKIV 56

Query: 72  KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKST 129
             L  +F E++ NA D  +       IEV+++    F+ V ++G+GIP+E H K      
Sbjct: 57  PGLFKIFDEILVNAADNKVRDPSMKKIEVNINKEENFIEVKNDGKGIPIEIHEK-EQIYI 115

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ--KFSRG 187
            E+I   L     +D+   +++GG +G G  + N  S E  +  A          K+   
Sbjct: 116 PEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSSEFILETADPIKGEKYLQKWEAN 175

Query: 188 IPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           + +    K    +     T+++F+PD + FG +   D    +   +              
Sbjct: 176 MSICHKPKITSYKKGPSYTKVSFKPDLQRFGMEHLDDDIVGIMRRRVFDINGSVRDISVY 235

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
            + +           E Y     K   + +  +     + ++              E A 
Sbjct: 236 LNGKSLRIRNFKNYVELYLKSLEKKKSEEQGADVGKAPTILY-------ERLNDRWEIAF 288

Query: 307 AWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISA 366
           A  +   +  S+ N+I T  GGTH + +   + + I ++ +  +     +I +  +    
Sbjct: 289 AVSDVAFQQISFVNSIATTSGGTHVNYVSDQIVKKITEHLKKKKK--GKTIKAFQIKNHI 346

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
              ++  I  P F  QTK +L +       +  ++D F      N I  T+L E V E +
Sbjct: 347 FIFVNCQIENPAFTSQTKEQLTTRVRDFGSKCDIKDEFI-----NKIMKTELAERVFELA 401

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCS-QNIAHGTELFIVEGDSAGGSAKQA---R 482
           ++   +  Q+    +          + A+C+     +   L + EG SA   A       
Sbjct: 402 DQNEEKALQKSDGSRKNRITKYATLEDANCAGTKQGYKCTLVLTEGLSAQSLAVAGLAVV 461

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIM 541
            R      PLRGK+LNV  A +E+I  N +I  + + +G + R +Y +   LRY  ++IM
Sbjct: 462 GRDYYGCYPLRGKMLNVREASAEQINKNAEIQAIKKIVGLQHRKKYEDTKSLRYGHIMIM 521

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQ---GTKSVYAHDEEHK 597
           TD D DG+HI  L++ F       L++    L     P+ ++T        +  ++    
Sbjct: 522 TDQDHDGSHIKGLIINFLESSFPGLLDIPGFLIEFITPIVKVTITRPKRDVISFYNMPDY 581

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           ++  E  K+  K   +   +KGLG     + +E   D +        +       +    
Sbjct: 582 EEWRE--KESHKYSWKQKYYKGLGTSSLQEAREYFSDLDTHLKKFHALEG--EDSQLIDL 637

Query: 658 SINKLMGTKADERFKFIQER--ASFID 682
           + +K    KAD+R +++++    + +D
Sbjct: 638 AFSK---KKADDRKEWLRQYEPGNTLD 661


>gi|32478664|gb|AAP83584.1| DNA-topoisomerase II [Physarum polycephalum]
          Length = 1498

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 152/725 (20%), Positives = 262/725 (36%), Gaps = 76/725 (10%)

Query: 11  TLPPQSQGSSEKLKKSGEIPDSPAFA--------NQSASDNYDASSIRILEGLEPVRMRP 62
                 +    K   +G+   +PA            S  + Y          +E + +RP
Sbjct: 282 QSAHTKKRGKSKGTSTGDSTSAPAPTQLLDNNGQPVSVEEMYQKK-----TPVEHILLRP 336

Query: 63  GMYIGGTD-----------------------EKALHHLFSEVIDNAMDEVIAGY-ANLIE 98
             YIG                             L+ +F E++ NA D     +  N+++
Sbjct: 337 DSYIGSIQHTHQEQWVINESDGRMEYRECKYVPGLYKIFDEILVNAADNKQRDHKMNVLQ 396

Query: 99  VSLDG-NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           V++D  N  +++++NG+GIPV+ H K       E++L TL  G  FD+   +++GG +G 
Sbjct: 397 VTIDPANNIISILNNGKGIPVQLHEK-EKVYVPELVLGTLLTGSNFDDKIAKVTGGRNGF 455

Query: 158 GISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSP---LEKKEKVRNKRGTRITFRPD 212
           G  + N  S    V  A   ++ ++ Q +S  +       +E     +    TRITF PD
Sbjct: 456 GAKLTNIFSTSFEVETADAARHKLYRQSWSENMSQRTEPSIEHYSGPKGSDYTRITFSPD 515

Query: 213 PKIFGDKAGFDAARL---LKMTQSKAYLSGRVKTCWSC-------DKEIAEKYGIPEKEE 262
              F  ++  +   L    +     A     V+   +        D  ++       +  
Sbjct: 516 LAKFNMQSLENGDILRLMKRRIYDMAACLPSVQVSLNGIPIPSGFDAYVSMYQPKDAQPL 575

Query: 263 FYFPGGLKTYLQTKLENRSLISS------EIFTGKTEKKGTHRGTVEWAIAWCEENPEIT 316
                G +   +   E                      K   R  V   +   E      
Sbjct: 576 SNAEDGAQNEQEEHGEGAEGTEGEQPGKQPTKHPFVYAKINDRWQVAVGLTMLEGQFSQV 635

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIRE 376
           S+ N+I T +GGTH + +   + + I +   +T+    +      +  +    ++  I  
Sbjct: 636 SFVNSIATSKGGTHVNHVAEQVVKAIHE--RITKKYPDLDTRPAHIRNNLFVFVNCLIEN 693

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P F  QTK  L +  A       L D F   +V       K++ W   +      +   R
Sbjct: 694 PAFDSQTKDTLTTRPAHFGSACDLPDSFLKRIVAQVPIIDKVVGWAKLKQMAEFEKSSTR 753

Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLR 493
           +   K  I+ +             +    L I EGDSA   A    +   R    V PLR
Sbjct: 754 KPKDKAGIKAIPKLDDANFAGGPRSSECTLIITEGDSAKSLAVSGLSIVGRDKYGVFPLR 813

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR----EEDLRYEKVIIMTDADVDGA 549
           GK+LNV     +++  N+++  L   LG     +YR      +LRY KV++MTD D DG+
Sbjct: 814 GKLLNVRDQSPKRVMENEELKHLRMILGLTPGKEYRTAEDRAELRYGKVMLMTDQDHDGS 873

Query: 550 HIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           HI  L + F  Q    L+EQ   L     P+ +   G +    +     +    +     
Sbjct: 874 HIKGLFVNFMIQFWPSLLEQDGFLEQFITPIVKAFHGAEVQTFYTTSEYEIWRSQLPDDQ 933

Query: 609 KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKAD 668
             K  I  +KGLG   + + +E   D  +    R+E   D  +      +  K    +  
Sbjct: 934 LSKWRIKYYKGLGTSSSQEAREYFKDLERH---RIEFKWDDTTTTKMDMAFGK---DETA 987

Query: 669 ERFKF 673
           +R  +
Sbjct: 988 QRKTW 992


>gi|302344829|ref|YP_003813182.1| DNA topoisomerase IV subunit B [Prevotella melaninogenica ATCC
           25845]
 gi|302149357|gb|ADK95619.1| DNA topoisomerase IV subunit B [Prevotella melaninogenica ATCC
           25845]
          Length = 652

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 184/703 (26%), Positives = 296/703 (42%), Gaps = 104/703 (14%)

Query: 28  EIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----EKALHHLFSEVI 82
           +   +   ++   S  Y   +IR L  +E VR RPGMYIG        E  ++ L  EVI
Sbjct: 3   KSTATNPQSSTPVS--YTDDNIRHLSDMEHVRTRPGMYIGRLGDGKLPEDGIYVLLKEVI 60

Query: 83  DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142
           DN++DE      + IE+ ++ N  ++V D GRGIP            L   ++ L+ GGK
Sbjct: 61  DNSIDEFKMNAGDRIEIDVEDNLRVSVRDYGRGIPQGK---------LVEAVSVLNTGGK 111

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           +D+  ++ S GL+GVG+  VNALS    V   R   +    F +G   S   K +K  ++
Sbjct: 112 YDSKAFKKSVGLNGVGVKAVNALSAHFEVKSFRDGKVRELSFEKGNLQSD--KTKKSADE 169

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT I F PD  +F     F    + +M ++  YL+  +   ++  +             
Sbjct: 170 NGTYIYFEPDATLFK-HYSFHDDIVEEMLRNYTYLNTGLTIMYNGRRI------------ 216

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
                GLK  L   +    L       G+          +E A     +   E  S+ N 
Sbjct: 217 -LSRHGLKDLLTDNMTVDPLYPIVHMKGE---------DIEIAFTHTNQYGEEYYSFVNG 266

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
             T +GGTH++  +  + + IK++               D+    V  +++ + EP F  
Sbjct: 267 QHTTQGGTHQTAFKEHIAKTIKEFFG--------KYEYGDIRNGLVAAIAINVEEPVFES 318

Query: 382 QTKTKLVSLDAQR-------TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
           QTK KL S             V + ++   D+YL  +  + T +LE  I+ +E   +   
Sbjct: 319 QTKIKLGSTQMSPDGESINKYVGDFIKTNVDNYLHIHKEDFTDILENKIKETERERKAMA 378

Query: 435 QREVNRKTAIRKLR--------LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                 +   +K                D   +    + +FI EGDSA GS  ++R+ + 
Sbjct: 379 GVTKLARERAKKANLHNRKLRDCRVHYCDVKNDRKEESSIFITEGDSASGSITKSRDVNT 438

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADV 546
           QAV  LRGK LN      + +  N++   L  AL          + LRY KVI+ TDADV
Sbjct: 439 QAVFSLRGKPLNCFGLTKKVVYENEEFNLLQAALDIEDGL----DSLRYNKVIVATDADV 494

Query: 547 DGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT------QGTKSV----------- 589
           DG HI  L++TFF Q   +LI++ H++++  PLFR+       +  + +           
Sbjct: 495 DGMHIRLLIITFFLQFFPELIKKGHVYVLQTPLFRVRNRRTKIKNKEVIAEADARRVKGE 554

Query: 590 --------YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
                   Y + EE +   + E         EI+RFKGLGE+   +     +  + R L 
Sbjct: 555 KKNDFITRYCYSEEERVAAINELGPD----PEITRFKGLGEISPDEFAH-FIGPDMR-LE 608

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           +V ++K+    K     +   MG    ER  FI +     +D+
Sbjct: 609 QVTLHKNDQVAK----LLEYYMGKNTMERQNFIIDNLVIEEDL 647


>gi|312128865|ref|YP_003996205.1| DNA topoisomerase type iia subunit b region 2 domain protein
           [Leadbetterella byssophila DSM 17132]
 gi|311905411|gb|ADQ15852.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Leadbetterella byssophila DSM 17132]
          Length = 627

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 206/660 (31%), Positives = 314/660 (47%), Gaps = 76/660 (11%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYA 94
           A +NYD SSIR L+  E +R+RPGMYIG        +  ++ L  EVIDN +DE   G+ 
Sbjct: 2   AENNYDESSIRSLDWKEHIRLRPGMYIGKLGDGSAPDDGIYVLLKEVIDNCIDEYAMGHG 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             IEVS+D  G ++V D GRGIP+           +  +++ ++ G K+D+  ++ + GL
Sbjct: 62  KAIEVSIDE-GKVSVRDYGRGIPLGK---------VVDVVSKINTGAKYDSKAFQKAVGL 111

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           +GVG   VNALS    VT  R+  + + +F RG+ +S  E  EK   K GT + F PD  
Sbjct: 112 NGVGTKAVNALSSYFKVTAVREGEMKTAEFERGVLISESEI-EKTDAKNGTHVIFEPDNT 170

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           +F +   F    +  M  +  YL+  +    +  K             FY   GL   L 
Sbjct: 171 VFKNYH-FIGQYIENMIWNYCYLNSGLSIYLNRKK-------------FYSANGLLDLLL 216

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               + S +   I   K E        +E A+    +   E  S+ N   T +GGTH S 
Sbjct: 217 R-KTDESSLRYPIIHLKGED-------IEMALTHGNQYGEEYYSFVNGQNTTQGGTHLSA 268

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA- 392
            + A+ + ++ +             S+D+  S +G ++V I+EP F  QTKTKL S +  
Sbjct: 269 FKEAIVKTVRDHYG-------KDYASEDVRQSIIGAIAVRIQEPVFESQTKTKLGSNNIS 321

Query: 393 --------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI 444
                   +  V + +++  D+YL  +P     L   + +   ER      +++  + A 
Sbjct: 322 LDENAPTVRTFVNDFVKEHLDNYLHMHPDIKDALKRRIEQSERERKELAGVKKIANERAK 381

Query: 445 RKLRLPGKLADCSQNIAH-------GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
           +      KL DC  ++          T LFI EGDSA GS  +ARN   QAV  LRGK L
Sbjct: 382 KANLHNRKLRDCKYHLTDEKFEGRLDTMLFITEGDSASGSITKARNPETQAVFSLRGKPL 441

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557
           N      + +  N++   L  AL      +     LRY +++I TDADVDG+HI  LLLT
Sbjct: 442 NCYGLSKKVVYENEEFNLLQHALDIENGIET----LRYNQIVIATDADVDGSHIRLLLLT 497

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
           FF Q   DL+ + HLF++  PLFR+    +++Y + +E KQ  + +      GK EI+RF
Sbjct: 498 FFLQFFPDLVREGHLFILQTPLFRVRNKKETIYCYSDEEKQMAINKLG----GKPEITRF 553

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           KGLGE+   +  E  ++ +   L  V + K+          ++  MG    ER  FI + 
Sbjct: 554 KGLGEISPHEF-EGFINKD-IKLDPVILEKE----STIPKLLSYYMGKNTPERQGFIIDN 607


>gi|261878863|ref|ZP_06005290.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270334542|gb|EFA45328.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 667

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 196/716 (27%), Positives = 309/716 (43%), Gaps = 101/716 (14%)

Query: 15  QSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD---- 70
               + +   K   + +S     Q  +  Y   +IR L  +E VR RPGMYIG       
Sbjct: 2   TDSKNMDGDGKRPGVGNSSTPGTQPQTPEYTDDNIRHLSDMEHVRTRPGMYIGRLGDGKL 61

Query: 71  -EKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
            E  ++ L  EVIDN++DE      + IEV +D N  ++V D GRGIP            
Sbjct: 62  PEDGIYVLLKEVIDNSIDEFKMNAGDRIEVDIDDNLHVSVRDYGRGIPQGK--------- 112

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
           L   ++ L+ GGK+D+  ++ S GL+GVG+  VNALS    V   R+  +   KF +G  
Sbjct: 113 LVEAVSMLNTGGKYDSKAFKKSVGLNGVGVKAVNALSAHFEVKSYREGKVRELKFEKG-- 170

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
               +K  K +++ GT + F PD  +F +   F    +  M ++  YL+  +   ++  +
Sbjct: 171 QLMDDKTSKSQDENGTYVFFEPDSSLFKNY-AFRDEIVETMLRNYTYLNSGLTIMYNGRR 229

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
                             GL+  L   +   SL       G           +E A    
Sbjct: 230 I-------------KSRNGLEDLLNDNMTVDSLYPIVHVKGD---------DIEVAFTHT 267

Query: 310 EENPEITS-YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVG 368
            +  E    + N   T +GGTH+S  +  + R IK++ +        +    D+    V 
Sbjct: 268 NQYGEEYHSFVNGQHTTQGGTHQSAFKEHIARTIKEFFD-------KNYEYADIRNGIVA 320

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQR-------TVENALRDPFDHYLVQNPIEATKLLEW 421
            +++ + EP F  QTK KL S             V + L+   D+YL  +  + T +LE 
Sbjct: 321 AIAINVEEPVFESQTKIKLGSTVMAPDGETINKFVGDFLKREVDNYLHIHKEDVTDILEN 380

Query: 422 VIERS-EERLRRRKQREVNRKTAIRKLRLPGKLADCSQN-------IAHGTELFIVEGDS 473
            I+ S  ER       ++ R+ A +      KL DC  +           T +FI EGDS
Sbjct: 381 KIKESERERKAMAGVTKLARERAKKASLHNRKLRDCRIHFCDAKNDQKEETSIFITEGDS 440

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           A GS  ++R+ + QAV  LRGK LN      + +  N++   L  AL          ++L
Sbjct: 441 ASGSITKSRDVNTQAVFSLRGKPLNSFGLTKKVVYENEEFNLLQAALDIEDGL----DNL 496

Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT------QGTK 587
           RY KVI+ TDADVDG HI  L++TFF Q   +LI++ H+F++  PLFR+       +  K
Sbjct: 497 RYNKVIVATDADVDGMHIRLLIITFFLQFYPELIKKGHVFVLQTPLFRVRNRRTKIKNKK 556

Query: 588 -------------------SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
                              + Y + E+ + + +           EI+RFKGLGE+   + 
Sbjct: 557 IIAEADARLGKGEKKNDFITWYCYTEDERLEAISALGPD----PEITRFKGLGEISPEEF 612

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
               +  + R L +V ++K+       Q  +   MG    ER  FI +     +D+
Sbjct: 613 AH-FIGPDMR-LEQVTLHKN----DQVQKLLEYYMGKNTMERQNFIIDNLVIEEDI 662


>gi|111114859|ref|YP_709477.1| DNA topoisomerase IV subunit B [Borrelia afzelii PKo]
 gi|216263988|ref|ZP_03435982.1| DNA topoisomerase II (N- region) domain protein [Borrelia afzelii
           ACA-1]
 gi|110890133|gb|ABH01301.1| DNA topoisomerase IV [Borrelia afzelii PKo]
 gi|215980032|gb|EEC20854.1| DNA topoisomerase II (N- region) domain protein [Borrelia afzelii
           ACA-1]
          Length = 599

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 197/650 (30%), Positives = 311/650 (47%), Gaps = 66/650 (10%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + NYD S I  L  LE +R+R GMYIG        +  ++ L  E+IDN++DE I GY 
Sbjct: 2   KTQNYDESKIITLSSLEHIRLRSGMYIGRLGDGSNIDDGIYVLIKEIIDNSIDEFIMGYG 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           N I +    N  +++ D GRGIP+           +E + + ++ G K+++  ++ S GL
Sbjct: 62  NEIFIK-KENNLISIRDYGRGIPLGK--------VVESV-SVINTGAKYNDDVFQFSVGL 111

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           +GVG   VNALS +  V   R    F   FS+G  L   E   +  +K GT + F  DP+
Sbjct: 112 NGVGTKAVNALSSKFLVRSTRNGKSFEALFSKGKLLESREI--ESYDKDGTYVEFLADPE 169

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IFG    +    L +     A L+  +   ++              + F    GL  +L 
Sbjct: 170 IFGKY-SYSEDFLKRRFFHYACLNKGLVINYND-------------QIFESKNGLLDFLN 215

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
           +++++  L+   ++            T+E+A +          S+ N   T++GGTH++G
Sbjct: 216 SEIKSDDLLYDIVYYSS--------KTLEFAFSHTNNYGETYFSFVNGQYTNDGGTHQTG 267

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            R    R I  +      K+  S    D+    V  LSV I++P F  QTK KL +++ +
Sbjct: 268 FREGFVRAINDF-----LKKTYSST--DIREGLVATLSVKIKDPIFESQTKNKLGNIETR 320

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
             V   ++      L ++ I A  + + V++    R      R+  R+ A +      KL
Sbjct: 321 GNVAKEVQKIISEILYKDKILAKLIEKKVVDNERLRKELSSVRKEARERAKKISFKIPKL 380

Query: 454 ADCSQNIA------HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            DC  +          T +F+ EGDSA GS    R+   QA+  LRGK  N+      +I
Sbjct: 381 KDCKFHFNSSSKQSEQTMIFLTEGDSATGSMVSCRDVYTQAIFSLRGKPQNMFEKNKSEI 440

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N+++ +++ ALG         E+LRY KV+I TDAD DG HI +LLLTFF     DLI
Sbjct: 441 YKNEELYNMMVALGIE----ESIENLRYNKVVIATDADFDGFHIRNLLLTFFLTFFEDLI 496

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
              H++++  PLFR+     ++Y + EE KQK + +     KG  E++RFKGLGE+  ++
Sbjct: 497 LNGHMYILETPLFRVRNKKNTIYCYSEEEKQKAILQL----KGGCEVTRFKGLGEISPNE 552

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
            K   +D N   L +V    DL ++K+ ++ +   MG    ER  FI E 
Sbjct: 553 FKG-FIDINSIKLTKV----DLFNIKEIKEKLGFYMGQNTPERRNFIMEN 597


>gi|169606618|ref|XP_001796729.1| hypothetical protein SNOG_06355 [Phaeosphaeria nodorum SN15]
 gi|111065066|gb|EAT86186.1| hypothetical protein SNOG_06355 [Phaeosphaeria nodorum SN15]
          Length = 1705

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 151/731 (20%), Positives = 285/731 (38%), Gaps = 87/731 (11%)

Query: 3   DDSIDLFSTLPPQSQGSSEKLKKSGEI----------PDSPAFANQSASDNYDASSIRIL 52
           DD   L    PP+ + +    K SG+             +   A+  AS  Y     ++L
Sbjct: 83  DDDESLLQDTPPKQKKAPAPKKTSGKPLADIDNESFDAAAVKKASSGASSKY-----QML 137

Query: 53  EGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDNAMDEV 89
             LE +  RP  YIG  +                          L+ +F E++ NA D  
Sbjct: 138 THLEHIMKRPDTYIGSVERQTDKMWVYNSTTESMEYRDVSYVPGLYKIFDEILVNAADNK 197

Query: 90  IAG-YANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST 147
                 + I V++D   G ++++++G+GIP+E H +       E+I   L     +D++ 
Sbjct: 198 QNDKNMSEIRVTVDRESGEVSILNDGKGIPIEVHAEH-GIYVPEMIFGHLLTSSNYDDNQ 256

Query: 148 YEISGGLHGVGISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEKVR-NKRG 204
            +++GG +G G  + N  S E  V      Q   + Q ++  + +    K    +     
Sbjct: 257 QKVTGGRNGYGAKLCNVFSKEFTVETVDSKQKKKYRQTWTENMSVMGKAKITDFKSGDDY 316

Query: 205 TRITFRPDPKIFGDK--AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
           T+I+++ D K FG         A + + T   A     +K   + ++             
Sbjct: 317 TKISWKADYKRFGMDGIDDDFEALIKRRTYDMAGTLRGIKVYLNKERVKVT--------- 367

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
             F   ++ Y +     +     +            R  + +A++  + +    S+ N+I
Sbjct: 368 -SFAKYMEMYTKAIAREQGNNEDDKQKDVIITDKHDRWDIGFAVS--DGSFNQVSFVNSI 424

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T  GGTH + +   +   +   A + +NK A+ +    +       ++  I  P F  Q
Sbjct: 425 ATTSGGTHVNYISDQIVEKL--MAVMKKNKAAVKLKPAQIKNHIFLFVNCSIVNPAFTSQ 482

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK +L +  +Q   +  L D F   + +     T++++ ++  +++   +  ++    K 
Sbjct: 483 TKEQLTTKASQFGSKPVLTDKFLKAIEK-----TEVIQNIMHFAQQTADKMLKKTDGNKR 537

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ---AVLPLRGKILNV 499
                              H   L + EG+SA   A   R   NQ    V PLRGK+LNV
Sbjct: 538 NRINNAKLTDANKAGTKDGHLCTLILTEGESASVLALAGRAVVNQDLFGVFPLRGKLLNV 597

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQY---REEDLRYEKVIIMTDADVDGAHIASLLL 556
             A  ++I  NQ+I ++ + +G + +  Y     + LRY  ++IMTD D DG+HI  LL+
Sbjct: 598 RDASVDQILKNQEIQNIKKFMGLQHKKDYTVADMKGLRYGHLMIMTDQDHDGSHIKGLLI 657

Query: 557 TFFYQEMYDLIEQ-KHLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKG 610
            F   +   L+     L     P+ ++ +G                 ++  E+ K     
Sbjct: 658 NFLQCQFPSLLRIPGFLLEFITPIVKVWKGDPKHPRSLKSFFSMPEYEEWKEQHKLE--K 715

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADER 670
             +   FKGLG       +    D +   + R ++ +     K  + + +K    KAD R
Sbjct: 716 GWDHKYFKGLGTSDIPDAQVYFKDLDTH-MKRFQVMRAEEE-KLIELAFSK---KKADAR 770

Query: 671 FKFIQERASFI 681
            +++    +F+
Sbjct: 771 KEWL---GNFV 778


>gi|304383905|ref|ZP_07366362.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella marshii
           DSM 16973]
 gi|304334983|gb|EFM01256.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella marshii
           DSM 16973]
          Length = 643

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 187/679 (27%), Positives = 288/679 (42%), Gaps = 100/679 (14%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           Y+  +IR L  +E VR RPGMYIG        E  ++ L  EVIDN++DE        I+
Sbjct: 9   YNDDNIRHLSDMEHVRTRPGMYIGRLGDGSLPEDGIYVLLKEVIDNSIDEFKMHAGKRID 68

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           + +D N  +TV D GRGIP     +          ++ L+ GGK+D+  ++ S GL+GVG
Sbjct: 69  IDIDDNLRVTVRDYGRGIPQGKLIE---------AVSMLNTGGKYDSKAFKKSVGLNGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +  VNALS    V   R + + +  F RG  ++         ++ GT + F PD  +F +
Sbjct: 120 LKAVNALSTRFEVRSYRDSQVRTAIFERGQLITDTT--TPSDDESGTLVAFTPDNTMFLN 177

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    +  M ++  YL+  +    +  +                  GL+  LQ  + 
Sbjct: 178 YR-FHDDIVEDMLRNYTYLNTGLAIICNGRRI-------------LSRNGLEDLLQDTMT 223

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVA 337
           N  L                   +E A     +  E    + N   T +GGTH+S  +  
Sbjct: 224 NDGLYPIVHLAAD---------DIEIAFTHANQYGEEYHSFVNGQHTTQGGTHQSAFKEH 274

Query: 338 LTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR--- 394
           + + I+++A         S  S D+    V  +++ + EP F  QTK KL SL       
Sbjct: 275 IAKTIREFAG-------KSFDSSDIRNGLVAAIAINVEEPMFESQTKIKLGSLTMAPDGI 327

Query: 395 ----TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
                V + L+   D++L +NP  A  +L  V E   ER       ++ R+ A +     
Sbjct: 328 SINKYVGDFLKTELDNFLHKNPDIAEAILAKVQENERERKAMAGVTKLARERAKKANLHN 387

Query: 451 GKLADCSQNIAHGT-------ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
            KL DC  + +           +FI EGDSA GS  ++R+ + QAV  LRGK LN     
Sbjct: 388 RKLRDCRIHYSDVKDPRKEEACIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSFGLT 447

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            + +  N++   L  AL            LRY KVI+ TDADVDG HI  L++TFF Q  
Sbjct: 448 KKVVYENEEFNLLQAALDIEDGLDT----LRYNKVIVATDADVDGMHIRLLIITFFLQFF 503

Query: 564 YDLIEQKHLFLISPPLFRITQGTK-------------------------SVYAHDEEHKQ 598
            +LI++ H++++  PLFR+                              + Y + +E + 
Sbjct: 504 PELIKKGHVYVLQTPLFRVRNRRTRIADKTVVANFDEKATAGSRKADFITRYCYSDEERL 563

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
             + E         EI+RFKGLGE+   +            L +V ++K+       Q  
Sbjct: 564 TAIRELGPE----PEITRFKGLGEISPEEFAHFIG--ADMRLEQVTLHKN----DQVQRL 613

Query: 659 INKLMGTKADERFKFIQER 677
           +   MG    ER  FI   
Sbjct: 614 LEYYMGKNTMERQNFIINN 632


>gi|300727525|ref|ZP_07060916.1| DNA topoisomerase II (N- region) domain protein [Prevotella
           bryantii B14]
 gi|299775228|gb|EFI71829.1| DNA topoisomerase II (N- region) domain protein [Prevotella
           bryantii B14]
          Length = 654

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 189/680 (27%), Positives = 294/680 (43%), Gaps = 101/680 (14%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTD-----EKALHHLFSEVIDNAMDEVIAGYANLI 97
            Y   +IR L  +E VR RPGMYIG        E  ++ L  EVIDN++DE      + I
Sbjct: 15  EYTDDNIRHLSDMEHVRTRPGMYIGRLGDGNLPEDGIYVLLKEVIDNSIDEFKMKAGSRI 74

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           EV ++ N  ++V D GRGIP            L   ++ L+ GGK+D+  ++ S GL+GV
Sbjct: 75  EVDIEDNLRVSVRDYGRGIPQGK---------LVEAVSVLNTGGKYDSKAFKKSVGLNGV 125

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+  VNALS    V   R+  +   +F +G  +S      K  ++ GT I F PD  +F 
Sbjct: 126 GVKAVNALSSHFTVRSYREGKVREIEFEKGNKISDHTN--KSNDENGTFIYFEPDNTLFK 183

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    +  M ++  YL+  +   ++  +              +   GL+  L   +
Sbjct: 184 NY-SFHDDIVETMLRNYTYLNSGLTIMYNGCRI-------------HSRNGLEDLLTDNM 229

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
               L                   +E A     +   E  S+ N   T +GGTH+S  + 
Sbjct: 230 TVDGLYPIIHM---------KDDDIEIAFTHTNQYGEEYYSFVNGQHTTQGGTHQSAFKE 280

Query: 337 ALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR-- 394
            + + IK+Y               D+    V  +++ + EP F  QTK KL S       
Sbjct: 281 HIAKTIKEYFN--------KYEYTDIRNGLVAAIAINVEEPVFESQTKIKLGSTQMSPDG 332

Query: 395 -----TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
                 V + ++   D+YL  +   A  +   + E   ER       ++ R+ A +    
Sbjct: 333 DSINKYVGDFIKKEVDNYLHIHTDVAEVIENKIKESEHERKAMAGVTKLARERAKKANLH 392

Query: 450 PGKLADCSQNIAHGT-------ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
             KL DC  + +           +FI EGDSA GS  ++R+ + QAV  LRGK LN    
Sbjct: 393 NRKLRDCRVHFSDVKNPLKEASSIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNCFGL 452

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
             + +  N++   L  AL          +DLRY KVI+ TDADVDG HI  L++TFF Q 
Sbjct: 453 TKKIVYQNEEFNLLQAALNIEDGL----DDLRYNKVIVATDADVDGMHIRLLIITFFLQF 508

Query: 563 MYDLIEQKHLFLISPPLFRIT------QGTKSV-------------------YAHDEEHK 597
             DLI++ H++++  PLFR+       +  K +                   Y + EE +
Sbjct: 509 YPDLIKKGHVYVLQTPLFRVRNRRTKIKNKKVIAAADELLAKGEKKNDFITRYCYSEEER 568

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           Q+ ++E         EI+RFKGLGE+   +     +  + R L +V ++K+       Q 
Sbjct: 569 QEAIQELGPD----PEITRFKGLGEISPDEFVH-FIGPDMR-LEQVTLHKN----DQVQK 618

Query: 658 SINKLMGTKADERFKFIQER 677
            +   MG    ER  FI + 
Sbjct: 619 LLEYYMGKNTMERQNFIIDN 638


>gi|194339071|gb|ACF49451.1| GyrB [Amycolatopsis fastidiosa]
          Length = 465

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 182/468 (38%), Positives = 271/468 (57%), Gaps = 16/468 (3%)

Query: 61  RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           RPGMYIG T E  LHHL  EV+DN++DE +AG+A  +EV+L  +G + V D+GRGIPV+ 
Sbjct: 1   RPGMYIGSTAEPGLHHLIWEVVDNSVDEAMAGHATRVEVTLLADGGVRVDDDGRGIPVDE 60

Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
           HP+   +S LE+++T LHAGGKFD+ +Y +SGGLHGVGISVVNALS  L+  V RQ  ++
Sbjct: 61  HPE-EKRSALEVVMTVLHAGGKFDSDSYAVSGGLHGVGISVVNALSTRLYAEVKRQGHVW 119

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
            Q++    P++P+++ E+     GT I+F PD KIF     F+A  + +  Q  A+L+  
Sbjct: 120 RQEYRDSEPVTPVQRGEETEE-TGTSISFWPDGKIFET-TTFNAETVARRLQEMAFLNKG 177

Query: 241 VKTCWSCDKEIAEKYGIP--------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
           +      ++   E+            ++  F++PGGL+ +++     R  +   +   + 
Sbjct: 178 LTISLRDERVSDEEAAEDVVGQAARVKERTFHYPGGLEDFVKHINHAREPLHRNVIAFEA 237

Query: 293 EKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ- 350
           E K      VE A+ W       + ++ NTI T EGGTHE G R ALTR +  YA   + 
Sbjct: 238 EDKD-KGIQVEVAMQWNTGYSESVHTFANTINTPEGGTHEEGFRAALTRVVNLYARDKKL 296

Query: 351 -NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
             ++  ++  DD+      I+SV + EP+F GQTK KL + +A+  V+    +    +  
Sbjct: 297 LKEKDANLGGDDVREGLAAIVSVKLSEPQFEGQTKQKLGNSEAKTFVQATCNEWLADWFE 356

Query: 410 QNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFI 468
           +NP EA  ++   +  ++ R+  RK RE V RK A+    LPGKL DC        EL+I
Sbjct: 357 RNPTEAKLIVTKAVSSAQARMAARKARELVRRKGALDIGGLPGKLRDCRSTNPEECELYI 416

Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           VEGDSAGGSAK  R+   QA+LP+RGKI+NV  A  +++  N ++  L
Sbjct: 417 VEGDSAGGSAKDGRDSRFQAILPIRGKIINVEKARIDRVLKNTEVQSL 464


>gi|288928630|ref|ZP_06422476.1| DNA topoisomerase IV, B subunit [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288329614|gb|EFC68199.1| DNA topoisomerase IV, B subunit [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 668

 Score =  369 bits (947), Expect = e-99,   Method: Composition-based stats.
 Identities = 188/692 (27%), Positives = 297/692 (42%), Gaps = 100/692 (14%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----EKALHHLFSEVIDNA 85
              +    +    Y   +IR L  +E VR RPGMYIG        E  ++ L  EVIDN+
Sbjct: 16  TPTSTQQGNNQTAYTDDNIRHLSDMEHVRTRPGMYIGRLGDGTQAEDGIYVLLKEVIDNS 75

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE        IEV L+ +  ++V D GRGIP            +E + + L+ GGK+D+
Sbjct: 76  IDEFKMQAGKRIEVDLEDDLRVSVRDYGRGIPQGK--------LVEAV-SMLNTGGKYDS 126

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             ++ S GL+GVG+  VNALS        R+  + +  F RG  +S     E    + GT
Sbjct: 127 KAFQKSVGLNGVGLKAVNALSARFEARSYREGKVRTVVFERGELISDNT--EDTNEENGT 184

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            I F PD  +F +   F    +  M ++  YL+  +   ++  + I              
Sbjct: 185 FIFFEPDNTLFLNYR-FKGEFVETMLRNYTYLNAGLTIMYNGRRII-------------S 230

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
             GL   L  ++ N  L       G+          +E A     +   E  S+ N   T
Sbjct: 231 RNGLADLLNDRMTNDGLYPIIHIQGE---------DIEIAFTHANQYGEEYYSFVNGQHT 281

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
            +GGTH+S  +  + + IK +          +    D+    V  +++ ++EP F  QTK
Sbjct: 282 TQGGTHQSAFKEHIAKTIKDFFS-------KNYEYVDIRNGLVAAIAINVQEPMFESQTK 334

Query: 385 TKLVSLDAQR-------TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
            KL SL            V + ++   D+YL  +   A ++   + E   ER       +
Sbjct: 335 IKLGSLTMSPGGESVNKYVGDFIKREVDNYLHIHADVAEEIKRKIDESERERKAMAGVTK 394

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAH-------GTELFIVEGDSAGGSAKQARNRSNQAVL 490
           + R+ A +      KL DC  + +         + +FI EGDSA GS  ++R+ + QAV 
Sbjct: 395 IARERAKKANLHNRKLRDCRIHFSDAKNDRKEESSIFITEGDSASGSITKSRDVNTQAVF 454

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
            LRGK LN      + +  N++   L  AL            LRY KVI+ TDADVDG H
Sbjct: 455 SLRGKPLNSYGLTKKVVYENEEFNLLQAALDIEEGLDT----LRYNKVIVATDADVDGMH 510

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT------QGTKSV--------------- 589
           I  L++TFF Q   +L+++ H++++  PLFR+       +  K +               
Sbjct: 511 IRLLIITFFLQFFPELVKKGHVYVLQTPLFRVRNRRTKIKSKKVIAAADARLMKGERKND 570

Query: 590 ----YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645
               Y ++E+ +QK + E         EI+RFKGLGE+   +     +    R L +V +
Sbjct: 571 FITRYCYNEDERQKAIAELGPD----PEITRFKGLGEISPEEF-THFIGPEMR-LEQVTL 624

Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           +K+          +   MG    ER  FI + 
Sbjct: 625 HKN----DQVHKLLEYYMGKNTMERQNFIIDN 652


>gi|303388894|ref|XP_003072680.1| DNA topoisomerase II [Encephalitozoon intestinalis ATCC 50506]
 gi|303301822|gb|ADM11320.1| DNA topoisomerase II [Encephalitozoon intestinalis ATCC 50506]
          Length = 1141

 Score =  369 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 147/683 (21%), Positives = 267/683 (39%), Gaps = 83/683 (12%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----------------------EKAL 74
           ++  + Y          +E + +RP  YIG  +                          L
Sbjct: 2   KTIEETYQKK-----TPVEHILLRPDSYIGSVEKEMQQMYVWDEDNSKMVFKNIEYVPGL 56

Query: 75  HHLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEI 132
           + +F E+I NA D  I     N+I+VS+D     ++V +NGRGIPV  H K  N    E+
Sbjct: 57  YKIFDEIIVNAADNKIRDPKMNVIKVSIDPEKNEISVYNNGRGIPVRIH-KEENVYVPEL 115

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN--TIFSQKFSRGIPL 190
           I   L     +++   +++GG +G G  + N  S E  V  A       + Q++   + +
Sbjct: 116 IFGNLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSKEFIVETADCEVKKYYKQRYRDNMGI 175

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
               +  +   +  TRITF+PD + F          + L K       +   VK   +  
Sbjct: 176 KEEPEISRYTKEDFTRITFKPDLRRFKMNKLDDDTVSLLKKRVYDLGGIVKDVKIFLNEK 235

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           K   +              G K Y++  + +   I  +                E A+  
Sbjct: 236 KIPVK--------------GFKEYVKLYIPSGVNIVHQ----------VINDRWELALTT 271

Query: 309 CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVG 368
            EE  +  S+ N I T +GG+H + +   +   + +   + + ++ +S+    +      
Sbjct: 272 SEEQFQQVSFVNAICTSKGGSHVNHVVERIVDPLLE--AIQKKEKGLSVRPFQIKSCMFI 329

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
            ++  I  P F  QTK  L    +    +      F   +++N    T L++ V   ++ 
Sbjct: 330 FVNCLIENPAFDSQTKENLTLRVSAFGSKCEPISDFVKNVIKN----TSLVQKVTSFAKA 385

Query: 429 RLRRRKQREVNRKTAIRKLRLPGKLADCS-QNIAHGTELFIVEGDSAGGSAKQARN---R 484
           R  ++ ++    KT+        + A+ +  + +    L + EGDSA   A    +   R
Sbjct: 386 RQSQQLKKTDGAKTSRLSGIPKLEDANFAGTSKSKDCTLILTEGDSAKTLAVSGLSVVGR 445

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTD 543
               V PLRGK+LNV  A  ++I +N +I ++ + LG +    Y +   LRY  ++IMTD
Sbjct: 446 DIYGVFPLRGKLLNVREASHKQIMDNAEISNIKKILGLQHNKIYEDVSSLRYGHIMIMTD 505

Query: 544 ADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQGTKSVYAHDEEHKQKILE 602
            D DG+HI  L++ F       L++    L     P+ R ++  +          ++   
Sbjct: 506 QDHDGSHIKGLIINFLDHFYPSLLKIPGFLQEFITPIVRASKKGEVKDFFTLPEYEEF-- 563

Query: 603 EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKL 662
              K       I  +KGLG   ++  K+   +      ++          +    + NK 
Sbjct: 564 ---KKNSDGWNIKYYKGLGTSTSADAKQYFSNLPIH--VKYFTPLIEEDKELIDLAFNK- 617

Query: 663 MGTKADERFKFIQ--ERASFIDD 683
              KAD R  ++   E  +F+D 
Sbjct: 618 --KKADARKTWLLNFEPGTFLDQ 638


>gi|300772127|ref|ZP_07081997.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300760430|gb|EFK57256.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 617

 Score =  369 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 188/663 (28%), Positives = 312/663 (47%), Gaps = 74/663 (11%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            Y+  SIR L+  E +R+RPGMYIG        +  ++ L  EV+DN++DE + G   +I
Sbjct: 3   TYNEDSIRSLDWKEHIRLRPGMYIGKLGDGSAYDDGIYVLLKEVVDNSIDEFVMGAGKII 62

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           ++S++    ++V D GRGIP+          ++  +++ ++ GGK+D+  ++ S GL+GV
Sbjct: 63  DISVNE-NKVSVRDYGRGIPIG---------SVVDVVSKINTGGKYDSKAFQKSVGLNGV 112

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G   VNALS +  V   RQ      +FS+G  ++  +K  +   + GT ++F PD  IF 
Sbjct: 113 GTKAVNALSTQFTVQSYRQGETRIAQFSKGELVTDEKK--ETTQRNGTAVSFYPDDSIFR 170

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   +    +  M  +  +L+  +   ++  K             F    GLK  L+  +
Sbjct: 171 NY-KYRMEFVENMIWNYVFLNSGLTINFNGQK-------------FISENGLKDLLERNI 216

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           +  S+    I              +E A+   ++   E  S+ N   T +GGTH++  R 
Sbjct: 217 DTESMRYPIIHL--------KGEDIEIALTHGQQYGEEYYSFVNGQHTTQGGTHQAAFRE 268

Query: 337 ALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA---- 392
           AL + I+++ +           + D+  S +G +++ ++EP F  QTKTKL S       
Sbjct: 269 ALVKTIREFYK-------KDFDAADVRSSIIGAIAIKVQEPVFESQTKTKLGSQSIGPDG 321

Query: 393 ---QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
              +  + + L+   D YL +N   A  LL+ +++   ER      +++  + A +    
Sbjct: 322 PTVRTFINDFLKKALDDYLHRNSDTADALLKRILQSERERKDIAGIKKLANERAKKASLH 381

Query: 450 PGKLADCSQNIAHGTE------LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
             KL DC  + +   E      LFI EGDSA GS  ++R+   QAV  L+GK LN     
Sbjct: 382 NRKLRDCKVHFSDKNERNQETTLFITEGDSASGSITKSRDVQTQAVFSLKGKPLNSYGMS 441

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            + +  N++   L  AL          + LRY  ++I TDADVDG HI  LLLTFF Q  
Sbjct: 442 KKIVYENEEFNLLQHALNIEDGL----DGLRYNNIVIATDADVDGMHIRLLLLTFFLQFF 497

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
            DL++  H+ ++  PLFR+    +++Y + +E +Q+ + +       K EI+RFKGLGE+
Sbjct: 498 PDLVKAGHVAILQTPLFRVRNKKETIYCYSDEERQRAIAKLGA----KPEITRFKGLGEI 553

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
             S+            L  V + KD       Q  +   MG    +R K I        D
Sbjct: 554 SPSEFGLFIG--KDIRLDPVILTKDNK----IQQLLEYYMGKNTPDRQKHIVNNLRVEVD 607

Query: 684 VGT 686
           +  
Sbjct: 608 LEA 610


>gi|294950051|ref|XP_002786436.1| DNA topoisomerase 2-alpha, putative [Perkinsus marinus ATCC 50983]
 gi|239900728|gb|EER18232.1| DNA topoisomerase 2-alpha, putative [Perkinsus marinus ATCC 50983]
          Length = 1579

 Score =  369 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 137/691 (19%), Positives = 268/691 (38%), Gaps = 55/691 (7%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGG------------------ 68
              P +P    +S    Y     + +  +E +  RP  Y+G                   
Sbjct: 2   ASPPSAPRHGGKSVEQIY-----KKMTQIEHILARPDTYVGSLEHQTERMWVWESETGHI 56

Query: 69  -----TDEKALHHLFSEVIDNAMDEVIAG--YANLIEVSLD-GNGFLTVVDNGRGIPVEN 120
                T    L+ +F E++ NA D +     + N I+V +D  NGF+ V +NG+G+P++ 
Sbjct: 57  VQKQITFCPGLYKIFDEILVNAADNLQRDPKHMNTIKVDIDAENGFIKVYNNGKGLPIQI 116

Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR--QNT 178
           H +       E++   L     +D+   +++GG +G G  + N  S +  +T A   +  
Sbjct: 117 HKEHH-VYVPELVFGHLLTSDNYDDKEKKVTGGRNGYGAKLSNIFSKKFLITTADRTRKK 175

Query: 179 IFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA--GFDAARLLKMTQSKAY 236
           ++ Q+F + +             +  T + F PD + FG         + + K     A 
Sbjct: 176 LYKQQFEKSMQKKKEPVITDYDKEDFTCVQFWPDLEKFGMTHLDADIVSLMSKRVIDVAG 235

Query: 237 LSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG 296
            S   K     + +        +  E Y  G    ++        +  + ++      + 
Sbjct: 236 TSASKKCKVYLNGKRVPISSFKDYAELYLTG---EWVDAPKIYEKVARANVYVSCGHVQV 292

Query: 297 THRGTVEWAIAWCEENPEIT---SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR 353
           + R  V   ++            S+ N+I T +GGTH + +   +   + K    T+NK 
Sbjct: 293 SDRWEVLVTLSDPAGGGGQFQQVSFANSINTVKGGTHVNHVAEQIVNAVLK-KAQTKNKG 351

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
            + +    +       ++  I  P F  QTK  L    A+   +  L +     ++ + I
Sbjct: 352 GMELKPFQVKNHMWLFVNALIENPTFDSQTKETLTLKVAKFGSKCVLSEGTMKKVLSSGI 411

Query: 414 EATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
               +     +++     + K      +T I  +       D     +    L + EGDS
Sbjct: 412 VDQVVNWAKFKQTATLQSKIKVGGTGGQTRIFGVPKLEDANDAGGRYSDRCTLILTEGDS 471

Query: 474 AGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530
           A   A        R    V PLRGK+LNV  A  ++  +N++I  +++ +G   R  Y  
Sbjct: 472 AKALAVAGLGVIGRDKYGVFPLRGKVLNVREASYKQTVDNKEIQAILKIIGLEPRKAYDG 531

Query: 531 ED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE-QKHLFLISPPLFRITQGTKS 588
              LRY  +++MTD D+DG+HI  LL+   +     L++ +  +     P+ +  +G + 
Sbjct: 532 VKGLRYGSIMVMTDQDLDGSHIKGLLINLVHHWWPGLLQTRGFMKEFVTPIVKCVKGRRE 591

Query: 589 VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648
           +        ++   +   +     +I  +KGLG   + + ++     +K +L      +D
Sbjct: 592 LSFFTLTEYEEW--KRNNNDGKGWKIKYYKGLGTSTSKEAQQYFSQISKHSLSF--DYRD 647

Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERAS 679
            +  +    + NK    +AD+R ++I   A 
Sbjct: 648 GDDGEAIDMAFNK---KRADDRKEWINGYAD 675


>gi|229496649|ref|ZP_04390363.1| DNA topoisomerase II domain protein [Porphyromonas endodontalis
           ATCC 35406]
 gi|229316546|gb|EEN82465.1| DNA topoisomerase II domain protein [Porphyromonas endodontalis
           ATCC 35406]
          Length = 645

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 196/692 (28%), Positives = 297/692 (42%), Gaps = 106/692 (15%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           Y   SI  L+    +R RPGMYIG        +  ++ L  EVIDN++DE + G   +IE
Sbjct: 7   YTEGSITTLDWDVHIRRRPGMYIGKLGDGSASDDGIYVLLKEVIDNSIDEFVMGQGKVIE 66

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V++   G ++V D GRGIP+           L   ++ ++ G K D+  ++ S GL+GVG
Sbjct: 67  VTI-AEGAVSVRDYGRGIPLGK---------LIDAVSKMNTGAKMDSRAFKKSVGLNGVG 116

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           I  VNALS    V   R+      +F R   L   E        +GT + F PD  +F +
Sbjct: 117 IKAVNALSSSFSVQSRREGQTKRVEFERAKILYDGEVV-PCDEPQGTEVCFTPDATLFRN 175

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    ++ M ++  +L+  +   ++  K             F    GL+  L   L 
Sbjct: 176 Y-QFREEYVVAMLRNYTFLNAGLTIIYNGKK-------------FLSRHGLQDLLNEDLT 221

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVA 337
              L                   +E AI    +  E    + N   T +GGTH S  R +
Sbjct: 222 GDPLYPVIHLQSD---------DIEVAITHINQYGEEFYSFVNGQNTTQGGTHLSAFRES 272

Query: 338 LTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA----- 392
           + R IK++          +    D+    V  +S+ + EP F  QTKTKL S D      
Sbjct: 273 VARVIKEHFS-------KNFDYSDIRSGIVAAVSLKVIEPTFESQTKTKLGSKDMVPEEH 325

Query: 393 ------------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
                       Q+ V + L+D  D YL  +   A  +L+ + E   ER       ++ R
Sbjct: 326 QYKDEPLYGVSIQKFVGDFLKDRLDDYLHIHTDVADVMLKKIQESERERKSMSGVAKLAR 385

Query: 441 KTAIRKLRLPGKLADCSQN---------IAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           + A +      KL DCS +             T +FI EG+SA GS   +R+   QAV  
Sbjct: 386 ERAKKSSLHNKKLRDCSIHLNDTKLKDKEPERTSIFITEGNSASGSITTSRDPKYQAVFS 445

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHI 551
           LRGK LN      + +  N++   L  AL          E LRY +VII TDAD DG HI
Sbjct: 446 LRGKPLNCFGLTKKIVYENEEFNLLQAALNIEEGL----EGLRYNRVIIATDADDDGMHI 501

Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRI--------------TQGTK------SVYA 591
             L+LTFF Q   DL+ + H++++  PL+R+              T+G K      + Y 
Sbjct: 502 RLLMLTFFLQFFPDLVRKGHVYILETPLYRVALPPGEIAQRKKRKTKGEKATSEEYTYYC 561

Query: 592 HDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651
           + +E + + L    K    K +++RFKGLGE+ A + KE   +     L +V + K+   
Sbjct: 562 YSDEERDQALHLLGK----KAQLTRFKGLGEISADEFKELITE-ENIKLRQVTLRKE--- 613

Query: 652 LKDTQDSINKLMGTKADERFKFIQERASFIDD 683
               +  ++  MG    +R  FI E     D+
Sbjct: 614 -DTYKHLLDFYMGKNTPDRQDFIIENLVMEDE 644


>gi|168187078|ref|ZP_02621713.1| DNA topoisomerase [Clostridium botulinum C str. Eklund]
 gi|169295011|gb|EDS77144.1| DNA topoisomerase [Clostridium botulinum C str. Eklund]
          Length = 1417

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 162/679 (23%), Positives = 297/679 (43%), Gaps = 55/679 (8%)

Query: 47  SSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGF 106
           + ++ L+G E VR R  + +G  D +   H   E++ N++D    G+ N I+V    +  
Sbjct: 2   ADLKRLKGSERVRKRVSVMMGSDDIRGCQHTLFEIVSNSIDRHRKGFGNYIKVIKHEDLS 61

Query: 107 LTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALS 166
            T++D+  G+P++ + K  N    ++ L  L+AG  +D ++   + G++G+G+      S
Sbjct: 62  YTIIDHADGLPMDWNDK-ENAYNWDLALKVLYAGDNYDANS--TALGINGLGLCSSQYAS 118

Query: 167 DELHVTVARQNTIFSQKFSRGIPLSPLE----------------------KKEKVRNKRG 204
           + + V   + +  ++ K  +G P+                           +    NK G
Sbjct: 119 EYMEVVSYKDDKKYTVKCKKGRPIDKNTGEFICEDDDTLFAREQGQRVLLVESNSENKTG 178

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I ++PD ++F +        +      +A ++  +K     +KE        +    Y
Sbjct: 179 TYIHYKPDLEVFTNI-DISIDWINDKLDKQAMVNKELKIEVYDEKE-------DKLYTHY 230

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTE-----KKGTHRGTVEWAIAWCEENPEITSYC 319
           +  G+K Y++T  ++ +      FT K +      K  +    E A+ +  E  ++  Y 
Sbjct: 231 YESGIKDYIKTISDDNNFSDVIYFTEKGKGRDKVDKPEYDYNYEIALVFNNEINKLEYYH 290

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N+    +GG+    + +A T  I +YA+     NK    I   D+  S + ++S F    
Sbjct: 291 NSSELLQGGSTADAINLAFTYAINEYAKDNNLFNKNESKIKFTDIQDSLICVISSFSTMT 350

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
            +A QTK  + +   +     +L++    Y ++N +EA +++  ++       +  K + 
Sbjct: 351 SYANQTKLSIDNKFIKDFTNQSLKEKLKLYFIENKLEAGRIVNQILINKRANDKAEKTKL 410

Query: 438 VNRKTAIRKLRL--PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
             +KT   K           C+ N    TEL++ EG SA GS    RN   QA   + GK
Sbjct: 411 NIKKTLQTKSNFDDTDNFYACTSNDKSITELYLAEGSSAQGSIVMGRNSKFQACYHVGGK 470

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED---------LRYEKVIIMTDADV 546
           +L++  A  EKI  N+ + +L Q LGC    + +            L Y K+I+ TD D 
Sbjct: 471 MLSLLKADFEKIFKNKVVRELFQYLGCGIEIKSKHNKDLNTFDENNLNYSKIILATDQDT 530

Query: 547 DGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKK 606
           D   I  L+LT  Y+    LI+  ++++   PL+ IT   K  +A+ EE K  ILEE  K
Sbjct: 531 DAFQIRCLMLTAIYRLAPTLIKHGYVYIAESPLYEITTADKVYHAYTEEEKITILEELSK 590

Query: 607 HGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK 666
            G    +  R KGLGE+ +  + ET M+   R + RV +      ++   ++    +G +
Sbjct: 591 KGIKYDKPERNKGLGEVDSDIIAETMMNPKTRKITRVTVQD----VEKMANTFELWLGDE 646

Query: 667 ADERFKFIQERASFIDDVG 685
              R + I     +I+   
Sbjct: 647 VKPRKEVITSNFDYIEHFD 665


>gi|260591900|ref|ZP_05857358.1| putative DNA topoisomerase IV, B subunit [Prevotella veroralis
           F0319]
 gi|260536184|gb|EEX18801.1| putative DNA topoisomerase IV, B subunit [Prevotella veroralis
           F0319]
          Length = 647

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 184/688 (26%), Positives = 293/688 (42%), Gaps = 102/688 (14%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTD-----EKALHHLFSEVIDNAMDEVIAGYANLI 97
            Y   +IR L  +E VR RPGMYIG        E  ++ L  EVIDN++DE      + I
Sbjct: 9   EYTDDNIRHLSDMEHVRTRPGMYIGRLGDGKLPEDGIYVLLKEVIDNSIDEFKMNAGDRI 68

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           E+ ++ N  ++V D GRGIP            L   ++ L+ GGK+D+  ++ S GL+GV
Sbjct: 69  EIDIEDNLRVSVRDYGRGIPQGK---------LVEAVSVLNTGGKYDSKAFKKSVGLNGV 119

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+  VNALS    V   R+  + +  F +G       K +K  ++ GT I F PD  +F 
Sbjct: 120 GVKAVNALSSHFEVKSFREGKVRALSFEKGNLQGD--KTKKTNDESGTYIYFEPDNTLFK 177

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    + +M ++  YL+  +   ++  +                  GLK  L   +
Sbjct: 178 NY-SFHDDIVEEMLRNYTYLNTGLTIMYNGRRI-------------LSRHGLKDLLTDNM 223

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
               L       G+          +E A     +   E  S+ N   T +GGTH++  + 
Sbjct: 224 TGDPLYPIVHMKGE---------DIEIAFTHTNQYGEEYYSFVNGQHTTQGGTHQTAFKE 274

Query: 337 ALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR-- 394
            + + IK++               D+    V  ++V + EP F  QTK KL S       
Sbjct: 275 HIAKTIKEFFG--------KYEYGDIRNGLVAAIAVNVEEPVFESQTKIKLGSTLMAPEG 326

Query: 395 -----TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR- 448
                 V + ++   D+YL  +  + T +LE  I+ +E   +         +   +K   
Sbjct: 327 ETINKYVGDFIKTNVDNYLHIHKEDFTDILESKIKETERERKAMAGVTKLARERAKKANL 386

Query: 449 -------LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
                        D   +    + +FI EGDSA GS  ++R+ + QAV  LRGK LN   
Sbjct: 387 HNRKLRDCRIHFCDVKNDRKEDSSIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSFG 446

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
              + +  N++   L  AL          + LRY KVI+ TDADVDG HI  L++TFF Q
Sbjct: 447 LTKKVVYENEEFNLLQAALDIEDGL----DSLRYNKVIVATDADVDGMHIRLLIITFFLQ 502

Query: 562 EMYDLIEQKHLFLISPPLFRIT--------------------QGTK-----SVYAHDEEH 596
              +LI++ H++++  PLFR+                     +G K     + Y + EE 
Sbjct: 503 FFPELIKKGHVYVLQTPLFRVRNRRTKIKDKQVLADADARRAKGEKKNDFITRYCYSEEE 562

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
           +   + E         EI+RFKGLGE+   +     +  + R L +V ++K+        
Sbjct: 563 RVAAINELGPE----PEITRFKGLGEISPDEFAH-FIGPDMR-LEQVTLHKN----DQVS 612

Query: 657 DSINKLMGTKADERFKFIQERASFIDDV 684
             +   MG    ER  FI +     +D+
Sbjct: 613 KLLEYYMGKNTMERQNFIIDNLVIEEDL 640


>gi|226321134|ref|ZP_03796675.1| DNA topoisomerase II domain protein [Borrelia burgdorferi 29805]
 gi|226233426|gb|EEH32166.1| DNA topoisomerase II domain protein [Borrelia burgdorferi 29805]
          Length = 599

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 198/650 (30%), Positives = 310/650 (47%), Gaps = 66/650 (10%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + NYD S I  L  LE +R+R GMYIG        +  ++ L  E+IDN++DE I GY 
Sbjct: 2   KTQNYDESKIITLSSLEHIRLRSGMYIGRLGDGSNIDDGIYVLIKEIIDNSIDEFIMGYG 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           N I +    N  +++ D GRGIP+           +E + + ++ G K+++  ++ S GL
Sbjct: 62  NEIFIK-KENNLISIRDYGRGIPLGK--------VIESV-SVINTGAKYNDDVFQFSVGL 111

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           +GVG   VNALS +  V   R    F   FS+G  L   E   K  +K GT + F  D +
Sbjct: 112 NGVGTKAVNALSSKFLVRSTRNGKSFEALFSKGKLLESREI--KSSDKDGTYVEFLADSE 169

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IFG    +    L +     A L+  +   ++              + F    GL  +L 
Sbjct: 170 IFGKY-SYSEDFLKRRFFHYACLNKGLIINYND-------------QIFESKNGLLDFLN 215

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
           +++++  L+   ++            T+E+A +          S+ N   T++GGTH++G
Sbjct: 216 SEIKSDDLLYDIVYYSS--------KTLEFAFSHTNNYGETYFSFVNGQYTNDGGTHQTG 267

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            R    R I  +      K+  S    D+    V  LSV I++P F  QTK KL +++ +
Sbjct: 268 FREGFVRAINDF-----LKKTYSST--DIREGLVATLSVKIKDPIFESQTKNKLGNIETR 320

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
             V   ++      L ++ I A  + + V++    R      R+  R+ A +      KL
Sbjct: 321 GNVAKEVQKIISEILYKDKILAKLIEKKVVDNERLRKELSSVRKEARERAKKISFKIPKL 380

Query: 454 ADCSQNIAH------GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            DC  +          T +F+ EGDSA GS    R+   QA+  LRGK  N+      +I
Sbjct: 381 KDCKFHFNDSSKQSEQTMIFLTEGDSATGSMVSCRDVYTQAIFSLRGKPQNMFEKNKSEI 440

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N+++ +++ ALG         E+LRY KV+I TDAD DG HI +LLLTFF     DLI
Sbjct: 441 YKNEELYNMMVALGIE----ESIENLRYNKVVIATDADFDGFHIRNLLLTFFLTFFEDLI 496

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
              H++++  PLFR+     ++Y + EE KQK + E     KG  E++RFKGLGE+  ++
Sbjct: 497 LNGHMYILETPLFRVRNKKITIYCYSEEEKQKAILEL----KGGCEVTRFKGLGEISPNE 552

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
            K   +D N   L +V    DL ++K+ ++ +   MG    ER  FI E 
Sbjct: 553 FKG-FIDINSIKLTKV----DLFNIKEIKEKLGFYMGQNTPERRNFIMEN 597


>gi|313885866|ref|ZP_07819607.1| DNA topoisomerase IV subunit B [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924695|gb|EFR35463.1| DNA topoisomerase IV subunit B [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 673

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 184/708 (25%), Positives = 299/708 (42%), Gaps = 115/708 (16%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-----KALHHLFSEVIDNAMD 87
           P   +Q+    Y     R L   E +R RPGMYIG   +       ++ L  EVIDN++D
Sbjct: 10  PELLDQATVAGYTEDDFRTLSWSEHIRKRPGMYIGKIGDGTQADDGIYILIKEVIDNSID 69

Query: 88  EVIAGYANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146
           E + G  + I +++D     + + D GRGIP+           L    + ++ G K D+ 
Sbjct: 70  EFVMGVGSEIRITIDSETNEVQIRDYGRGIPLGK---------LVDATSKMNTGAKIDSQ 120

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK-VRNKRGT 205
            ++ S GL+GVG+  VNALS    V   R+    S  + R   ++         +   GT
Sbjct: 121 AFKKSVGLNGVGLKAVNALSSTFTVQSWREGETSSVTYERAEMVAHTPAAPCEDKEVHGT 180

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            ++F PD ++F +   +D   +  + ++  YL+  +    +  K             +  
Sbjct: 181 LVSFTPDAEVFRNSH-YDLRHVEALVRNYCYLNTGLTLYLNDKK-------------YVS 226

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILT 324
             GL+ +L   +    L      TG           +E AI   E+  E    + N   T
Sbjct: 227 RHGLQDFLSDTITGDPLYPIIRLTG---------PDIEVAITHIEQYGEEFYSFVNGQYT 277

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
            +GGTH +  R  + R IK+++              D+       +S+ I EPEF  QTK
Sbjct: 278 TQGGTHLTAFREQVARVIKEFSGKG-------FEYGDIRSGMAAAISIRIIEPEFESQTK 330

Query: 385 TKLVSLDA-----------------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            KL S +                  Q+ V + L++  D+YL  +P  +  +L+ +     
Sbjct: 331 IKLGSKEMVPQDPMFEHEPLRGVTVQKFVGDFLKEKLDNYLHMHPDISEVMLQTIQANER 390

Query: 428 ERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHG-------TELFIVEGDSAGGSAKQ 480
           ER       ++ R+ A +      KL DC+++           T +FI EG+SA GS  Q
Sbjct: 391 ERKAMSGVTKLARERAKKASLHNKKLRDCTEHYNDPKAKNPELTSIFITEGNSASGSITQ 450

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +R+   QAV  LRGK LN      + +  N++   L  AL          E LRY +VII
Sbjct: 451 SRDARYQAVFSLRGKPLNSYGLSKKVVYENEEFNLLQAALNIEDGL----EGLRYNRVII 506

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT---QGTKSV-------- 589
            TDAD DG HI  L LTFF Q   +L+ + H++++  PL+R++   +  KS+        
Sbjct: 507 ATDADDDGMHIRLLTLTFFLQFFPELVRRGHVYILETPLYRVSLPAKRKKSITARVASAG 566

Query: 590 --------------------YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
                               Y + ++     +E          +I+RFKGLGE+ A++ K
Sbjct: 567 KKKGGKKATSEPASETETSAYCYSDQELNAAVERMGASA----QITRFKGLGEISANEFK 622

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           E   +     L +V + K+ N     +  ++  MG    +R  FI + 
Sbjct: 623 ELITE-ENIKLRQVSLRKEDN----LKRMLHFYMGKNTPDRQDFIIDN 665


>gi|332177742|gb|AEE13432.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Porphyromonas asaccharolytica DSM 20707]
          Length = 673

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 184/708 (25%), Positives = 299/708 (42%), Gaps = 115/708 (16%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-----KALHHLFSEVIDNAMD 87
           P   +Q+    Y     R L   E +R RPGMYIG   +       ++ L  EVIDN++D
Sbjct: 10  PELLDQATVAGYTEDDFRTLSWSEHIRKRPGMYIGKIGDGTQADDGIYILIKEVIDNSID 69

Query: 88  EVIAGYANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146
           E + G  + I +++D     + + D GRGIP+           L    + ++ G K D+ 
Sbjct: 70  EFVMGVGSEIRITIDSETNEVQIRDYGRGIPLGK---------LVDATSKMNTGAKIDSQ 120

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK-VRNKRGT 205
            ++ S GL+GVG+  VNALS    V   R+    S  + R   ++         +   GT
Sbjct: 121 AFKKSVGLNGVGLKAVNALSSTFTVQSWREGETSSVTYERAEMVAHTPAAPCEDKGVHGT 180

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            ++F PD ++F +   +D   +  + ++  YL+  +    +  K             +  
Sbjct: 181 LVSFTPDAEVFRNSH-YDLRHVEALVRNYCYLNTGLTLYLNDKK-------------YVS 226

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILT 324
             GL+ +L   +    L      TG           +E AI   E+  E    + N   T
Sbjct: 227 RHGLQDFLSDTITGDPLYPIIRLTG---------PDIEVAITHIEQYGEEFYSFVNGQYT 277

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
            +GGTH +  R  + R IK+++              D+       +S+ I EPEF  QTK
Sbjct: 278 TQGGTHLTAFREQVARVIKEFSGKG-------FEYGDIRSGMAAAISIRIIEPEFESQTK 330

Query: 385 TKLVSLDA-----------------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            KL S +                  Q+ V + L++  D+YL  +P  +  +L+ +     
Sbjct: 331 IKLGSKEMVPQDPMFEHEPLRGVTVQKFVGDFLKEKLDNYLHMHPDISEVMLQTIQANER 390

Query: 428 ERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHG-------TELFIVEGDSAGGSAKQ 480
           ER       ++ R+ A +      KL DC+++           T +FI EG+SA GS  Q
Sbjct: 391 ERKAMSGVTKLARERAKKASLHNKKLRDCTEHYNDPKAKNPELTSIFITEGNSASGSITQ 450

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +R+   QAV  LRGK LN      + +  N++   L  AL          E LRY +VII
Sbjct: 451 SRDARYQAVFSLRGKPLNSYGLSKKVVYENEEFNLLQAALNIEDGL----EGLRYNRVII 506

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT---QGTKSV-------- 589
            TDAD DG HI  L LTFF Q   +L+ + H++++  PL+R++   +  KS+        
Sbjct: 507 ATDADDDGMHIRLLTLTFFLQFFPELVRRGHVYILETPLYRVSLPAKRKKSITARVASAG 566

Query: 590 --------------------YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
                               Y + ++     +E          +I+RFKGLGE+ A++ K
Sbjct: 567 KKKGGKKATSEPASETETSAYCYSDQELNAAVERMGASA----QITRFKGLGEISANEFK 622

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           E   +     L +V + K+ N     +  ++  MG    +R  FI + 
Sbjct: 623 ELITE-ENIKLRQVSLRKEDN----LKRMLHFYMGKNTPDRQDFIIDN 665


>gi|262166470|ref|ZP_06034207.1| topoisomerase IV subunit B [Vibrio mimicus VM223]
 gi|262170623|ref|ZP_06038301.1| topoisomerase IV subunit B [Vibrio mimicus MB-451]
 gi|261891699|gb|EEY37685.1| topoisomerase IV subunit B [Vibrio mimicus MB-451]
 gi|262026186|gb|EEY44854.1| topoisomerase IV subunit B [Vibrio mimicus VM223]
          Length = 508

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 181/524 (34%), Positives = 274/524 (52%), Gaps = 20/524 (3%)

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           +NALS  + V V R   ++   F  G  ++ L       R   GT + F PD K F    
Sbjct: 1   MNALSKRVEVAVRRDGQVYEIAFEHGDKVTELAVTGTCGRRNTGTSVHFWPDTKYFDSPN 60

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL+   ++KA L   ++  ++      E         + +  GLK YL   ++  
Sbjct: 61  -FSVSRLINNLRAKAVLCPGLEIIFTDKVNNNE-------HRWLYEDGLKDYLAEGVKGY 112

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
           +L+  E FTG+   +     T               SY N I T +GGTH +GLR  L  
Sbjct: 113 TLLPEEPFTGEFTAQTEA-ATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLD 171

Query: 341 GIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
            ++++ E      R + +  +D+      +LSV +++P+FAGQTK +L S  +   V   
Sbjct: 172 AMREFCEFRNLLPRGVKLTGEDVFDRCAYVLSVKMQDPQFAGQTKERLSSRQSAAFVSGV 231

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
           ++D F  +L + P  A +L E  I  +  R+R    ++V RK       LPGKL DC+  
Sbjct: 232 VKDAFSLWLNEKPQLAEQLAEVCIANAHRRMR--ASKKVVRKKIASGPALPGKLTDCTVQ 289

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
             + TELF+VEGDSAGGSAKQAR+R  QAV+PLRGKILN     ++++  +Q++ D+  A
Sbjct: 290 DLNRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVA 349

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           LG    S    E LRY KV I+ DAD DG HIA+LL   F +    L++  H+++  PPL
Sbjct: 350 LGIDPDSDNL-ESLRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPL 408

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           +RI  G +  YA D++ K+ +LE   +  K K+ + RFKGLGEM   QL+ET MD N R 
Sbjct: 409 YRIDCGKEVFYALDDQEKEGVLERLSQK-KAKVNVQRFKGLGEMNPLQLRETTMDPNTRR 467

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           L+++ I+      + T + ++ L+G K AD+R  ++Q      +
Sbjct: 468 LVQLTIDD----AEATDEMMDMLLGKKRADDRRTWLQRNGDMAE 507


>gi|322824253|gb|EFZ29714.1| DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1461

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 142/685 (20%), Positives = 237/685 (34%), Gaps = 83/685 (12%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGG-----------------------TDE 71
            AN++  + Y           E +  RP MYIG                        T  
Sbjct: 1   MANRTVEEIYQKK-----TQHEHILSRPDMYIGTIEPVTEDMWLYDEAENIMKLRKCTWT 55

Query: 72  KALHHLFSEVIDNAMDEVIAGY--ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKS 128
             L+ +F E++ NA D  +        I+V +D   G + V +NG GIPV+ H +  N  
Sbjct: 56  PGLYKIFDEILVNAADNKVRDPLGQTAIKVWIDAERGMVRVYNNGEGIPVQRHREH-NLW 114

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTV--ARQNTIFSQKFSR 186
             E+I   L     +D++  +++GG +G G  + N  S    V    +R    F  ++  
Sbjct: 115 VPEMIFGYLLTSSNYDDTEAKVTGGRNGFGAKLTNVFSTRFEVETVHSRSRKKFFMRWRN 174

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIF--GDKAGFDAARLLKMTQSKAYLSGRVKTC 244
            +  S             T +TF PD   F            + +     A         
Sbjct: 175 NMLESEEPVITPSEGPDYTVVTFYPDFAKFNLQGFGEDMVHMMRRRVYDVAGC------- 227

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
              DK +       +     F   +  Y     E ++   S              G  E 
Sbjct: 228 --TDKSLRCYLNDTKIACSSFLEYVDLYPMMGEERKAASYSR-----------VNGRWEV 274

Query: 305 AIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMI 364
            +       +  S+ N+I T  GGTH   +   +   I K  E  + K    +    +  
Sbjct: 275 CVRVSNIGFQQVSFVNSIATTRGGTHVRYITDQV---IAKVTEQAKRKSKTEVKPHMIRP 331

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
                ++  +  P F  QTK  L +   +      L            I  + ++E  +E
Sbjct: 332 HLFVFINCLVENPGFDSQTKETLNTPKNRFGSTCDLPPSMID-----CILKSSIVERAVE 386

Query: 425 RSEERLRRRKQREVNRKTAIRKLRLP--GKLADCSQNIAHGTELFIVEGDSAGGSAKQA- 481
            +  +L R    ++      + L +P      +      H   L + EGDSA        
Sbjct: 387 MANSKLTREIASKLRNADRKQILGIPKLDDANEAGGKHGHRCTLILTEGDSAKALCTAGL 446

Query: 482 --RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKV 538
             ++R    V PLRGK LNV  A  +K+    +   + + +G   R +Y   E LRY  +
Sbjct: 447 AVKDRDYFGVFPLRGKPLNVRDATLKKVMACAEFQAVSKIMGLDIRQKYSGVERLRYGHL 506

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQGTKS------VYA 591
           +IM+D D DG+HI  L++   +    DLI+    L     P+ +  +  +S      +  
Sbjct: 507 MIMSDQDHDGSHIKGLIINMIHHYWPDLIKTPGFLQQFITPIVKARKKGRSDGDDRAISF 566

Query: 592 HDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651
                  +        G    EI  +KGLG   A + +E   + ++  L  V        
Sbjct: 567 FSMPDYFEWKNAIG-DGIRNYEIRYYKGLGTSGAKEGREYFENIDRHRLDFVH-----ED 620

Query: 652 LKDTQDSINKLMGTKADERFKFIQE 676
             D    +      K +ER  +I +
Sbjct: 621 ATDDARIVMAFAKDKVEERKHWITQ 645


>gi|227536159|ref|ZP_03966208.1| possible DNA topoisomerase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227244056|gb|EEI94071.1| possible DNA topoisomerase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 617

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 188/663 (28%), Positives = 312/663 (47%), Gaps = 74/663 (11%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            Y+  SIR L+  E +R+RPGMYIG        +  ++ L  EV+DN++DE + G   +I
Sbjct: 3   TYNEDSIRSLDWKEHIRLRPGMYIGKLGDGSAYDDGIYVLLKEVVDNSIDEFVMGAGKII 62

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           ++S++    ++V D GRGIP+          ++  +++ ++ GGK+D+  ++ S GL+GV
Sbjct: 63  DISVNE-NKVSVRDYGRGIPIG---------SVVDVVSKINTGGKYDSKAFQKSVGLNGV 112

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G   VNALS +  V   RQ      +FS+G  ++  +K  +   + GT ++F PD  IF 
Sbjct: 113 GTKAVNALSTQFTVQSYRQGETRIAQFSKGELVTDEKK--ETTQRNGTAVSFYPDDSIFR 170

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   +    +  M  +  +L+  +   ++  K             F    GLK  L+  +
Sbjct: 171 NY-KYRMEFVENMIWNYVFLNSGLVINFNGQK-------------FISENGLKDLLERNI 216

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           +  S+    I              +E A+   ++   E  S+ N   T +GGTH++  R 
Sbjct: 217 DTESMRYPIIHL--------KGEDIEIALTHGQQYGEEYYSFVNGQHTTQGGTHQAAFRE 268

Query: 337 ALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA---- 392
           AL + I+++ +           + D+  S +G +++ ++EP F  QTKTKL S       
Sbjct: 269 ALVKTIREFYK-------KDFDAADVRSSIIGAIAIKVQEPVFESQTKTKLGSQSIGPDG 321

Query: 393 ---QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
              +  + + L+   D YL +N   A  LL+ +++   ER      +++  + A +    
Sbjct: 322 PTVRTFINDFLKKALDDYLHRNSDTADALLKRILQSERERKDIAGIKKLANERAKKASLH 381

Query: 450 PGKLADCSQNIAHGTE------LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
             KL DC  + +   E      LFI EGDSA GS  ++R+   QAV  L+GK LN     
Sbjct: 382 NRKLRDCKVHFSDKNERNQETTLFITEGDSASGSITKSRDVQTQAVFSLKGKPLNSYGMS 441

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            + +  N++   L  AL          + LRY  ++I TDADVDG HI  LLLTFF Q  
Sbjct: 442 KKIVYENEEFNLLQHALNIEDGL----DGLRYNNIVIATDADVDGMHIRLLLLTFFLQFF 497

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
            DL++  H+ ++  PLFR+    +++Y + +E +Q+ + +       K EI+RFKGLGE+
Sbjct: 498 PDLVKAGHVAILQTPLFRVRNKKETIYCYSDEERQRAIAKLGA----KPEITRFKGLGEI 553

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
             S+            L  V + KD       Q  +   MG    +R K I        D
Sbjct: 554 SPSEFGLFIG--KDIRLDPVILTKDNK----IQQLLEYYMGKNTPDRQKHIVNNLRVEVD 607

Query: 684 VGT 686
           +  
Sbjct: 608 LEA 610


>gi|254673078|emb|CBA07750.1| topoisomerase IV subunit B [Neisseria meningitidis alpha275]
          Length = 578

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 199/543 (36%), Positives = 284/543 (52%), Gaps = 28/543 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ Y  SSI +L+GLEPV+ RPGMY   T   +  H+  EVIDNA DE + G+A  I+
Sbjct: 2   AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATAID 58

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154
           V +  +G L+V DNGRGIPV  HP+      +E++ T LHAGGKF+       Y  SGGL
Sbjct: 59  VQIHEDGSLSVRDNGRGIPVGLHPE-EGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213
           HGVG+SV NALS  L VTV R+  I    F+ G  + PL +  K      GT +   PD 
Sbjct: 118 HGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRVWPDG 177

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     +    L ++ ++KA L   V+   +      +       + +++P GLK+YL
Sbjct: 178 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEAHTQTWHYPDGLKSYL 233

Query: 274 QTKLENRSLISSEIFTGKTEKKGTH-----RGTVEWAIAWCEENPE-ITSYCNTILTDEG 327
              + +                G +          +A+ W EE      SY N I T  G
Sbjct: 234 TDLIADAQEAVPIFSCENYISDGHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293

Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           GTHE+GL+ A+   +  +  L     R + + SDD+      +LS  + +P+F GQTK K
Sbjct: 294 GTHEAGLKQAVFNAVSNFINLHNLLPRGVKVQSDDVFGKTAFVLSARVLDPQFQGQTKDK 353

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L + DA + V     DP + +L QN     K+ E  I +++ R+R    +++ +K     
Sbjct: 354 LTNRDALKLVATVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSV--KKIEKKKGSGV 411

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKL DC        ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN      ++
Sbjct: 412 AVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +  N +I D+  A+G          D   LRY K+ I++DADVDG+HI  LLLT F+   
Sbjct: 472 LFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFH--- 528

Query: 564 YDL 566
             L
Sbjct: 529 PPL 531


>gi|225552290|ref|ZP_03773230.1| DNA topoisomerase II domain protein [Borrelia sp. SV1]
 gi|225371288|gb|EEH00718.1| DNA topoisomerase II domain protein [Borrelia sp. SV1]
          Length = 599

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 198/650 (30%), Positives = 309/650 (47%), Gaps = 66/650 (10%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + NYD S I  L  LE +R+R GMYIG        +  ++ L  E+IDN++DE I GY 
Sbjct: 2   KTQNYDESKIITLSSLEHIRLRSGMYIGRLGDGSNIDDGIYVLIKEIIDNSIDEFIMGYG 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           N I +    N  +++ D GRGIP+           +E + + ++ G K+++  ++ S GL
Sbjct: 62  NEIFIK-KENNLISIRDYGRGIPLGK--------VIESV-SVINTGAKYNDDVFQFSVGL 111

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           +GVG   VNALS +  V   R    F   FS+G  L   E   K  +K GT + F  D +
Sbjct: 112 NGVGTKAVNALSSKFLVRSTRNGKSFEALFSKGKLLESREI--KSSDKDGTYVEFLADLE 169

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IFG    +    L +     A L+  +   ++              + F    GL  +L 
Sbjct: 170 IFGKY-SYSEDFLKRRFFHYACLNKGLIINYND-------------QIFESKNGLLDFLN 215

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
           +++++  L+   ++            T+E+A +          S+ N   T++GGTH++G
Sbjct: 216 SEIKSDDLLYDIVYYSS--------KTLEFAFSHTNNYGETYFSFVNGQYTNDGGTHQTG 267

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            R    R I  +      K+  S    D+    V  LSV I++P F  QTK KL +++ +
Sbjct: 268 FREGFVRAINDF-----LKKTYSST--DIREGLVATLSVKIKDPIFESQTKNKLGNIETR 320

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
             V   ++      L ++ I A  + + V++    R      R+  R+ A +      KL
Sbjct: 321 GNVAKEVQKIISEILYKDKILAKLIEKKVVDNERLRKELSSVRKEARERAKKISFKIPKL 380

Query: 454 ADCSQNIAH------GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            DC  +          T +F+ EGDSA GS    R+   QA+  LRGK  N+      +I
Sbjct: 381 KDCKFHFNDSSAQSEQTMIFLTEGDSATGSMVSCRDVYTQAIFSLRGKPQNMFEKNKSEI 440

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N+++ +++ ALG         E+LRY KV+I TDAD DG HI +LLLTFF     DLI
Sbjct: 441 YKNEELYNMMVALGIE----ESIENLRYNKVVIATDADFDGFHIRNLLLTFFLTFFEDLI 496

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
              H++++  PLFR+     + Y + EE KQK + E     KG  E++RFKGLGE+  ++
Sbjct: 497 LNGHMYILETPLFRVRNKKITTYCYSEEEKQKAILEL----KGGCEVTRFKGLGEISPNE 552

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
            K   +D N   L +V    DL ++K+ ++ +   MG    ER  FI E 
Sbjct: 553 FKG-FIDINSIKLTKV----DLFNIKEIKEKLGFYMGQNTPERRNFIMEN 597


>gi|261335183|emb|CBH18177.1| DNA topoisomerase II, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 1455

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 140/685 (20%), Positives = 244/685 (35%), Gaps = 83/685 (12%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGG-----------------------TDE 71
            + ++  + Y           E +  RP MYIG                        T  
Sbjct: 1   MSGRTVEEIYQKK-----TQHEHILARPDMYIGTIEPVTEDVWVYDEADNVMKLRKCTWT 55

Query: 72  KALHHLFSEVIDNAMDEVIAG-YA-NLIEVSLDG-NGFLTVVDNGRGIPVENHPKFPNKS 128
             L+ +F E++ NA D  +   +    I+V +D   G + V +NG GIPV+ H +  +  
Sbjct: 56  PGLYKIFDEILVNAADNKVRDPHGQTTIKVWVDAARGLVRVYNNGEGIPVQRHREH-DLW 114

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTV--ARQNTIFSQKFSR 186
             E+I   L     +D++  +++GG +G G  + N  S    V    +R    F  ++  
Sbjct: 115 VPEMIFGHLLTSSNYDDTEAKVTGGRNGFGAKLTNVFSTRFEVETVHSRSRKKFFMRWRN 174

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFG--DKAGFDAARLLKMTQSKAYLSGRVKTC 244
            +  +             T +TF PD + F            + +     A  + +   C
Sbjct: 175 NMLENEEAVITPCDGPDYTVVTFYPDFEKFNLEGFTEDMVLIMQRRVYDIAGCTDKSLCC 234

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
           +  D  IA +          FP  +  Y     E +    S                 E 
Sbjct: 235 YLNDTRIACRS---------FPEYVDLYPTMGEERKPSSYSR-----------VNDRWEV 274

Query: 305 AIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMI 364
            +       +  S+ N+I T  GGTH   ++  + + I K  +    K    +    +  
Sbjct: 275 CVRVSNVGFQQVSFVNSIATTRGGTH---VKYIVDQIIAKVTDQAMRKSKTEVKPHMIRP 331

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
                ++  I  P F  QTK  L +  A+      L            +  + ++E  +E
Sbjct: 332 HLFIFVNSLIENPSFDSQTKETLNTPKARFGSTCDLPASLID-----CVLKSSIVERAVE 386

Query: 425 RSEERLRRRKQREVNRKTAIRKLRLP--GKLADCSQNIAHGTELFIVEGDSAGGSAKQA- 481
            +  RL R    ++      + L +P      +     +    L + EGDSA        
Sbjct: 387 MANSRLNREMAMKMRNTNRKQILGIPKLDDANEAGGKYSQRCTLILTEGDSAKALCTAGL 446

Query: 482 --RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKV 538
              NR    V PLRGK LNV  A  +K+    +   + + +G     +Y   + LRY  +
Sbjct: 447 AVENRDYFGVFPLRGKPLNVRDASVKKVMGCAEFQAVSKIMGLDLSQKYTSTEGLRYGHL 506

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQGTK------SVYA 591
           +IM+D D DG+HI  L++   +    DL++    L     P+ +  +  +      ++  
Sbjct: 507 MIMSDQDHDGSHIKGLIINMIHNYWPDLLKVPGFLQQFITPIVKARKKGRGNSDEGTISF 566

Query: 592 HDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651
                  +        G    E+  +KGLG   A + +E   + ++  L  V        
Sbjct: 567 FSMPDYFEWKNAVG-EGIKNYELRYYKGLGTSGAKEGREYFENIDRHRLNFV-----YED 620

Query: 652 LKDTQDSINKLMGTKADERFKFIQE 676
            KD  D +      K DER ++I E
Sbjct: 621 RKDDDDIVMAFAKDKVDERKRWITE 645


>gi|83367164|gb|ABC17641.1| DNA topoisomerase IIalpha [Trypanosoma brucei]
          Length = 1455

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 140/685 (20%), Positives = 244/685 (35%), Gaps = 83/685 (12%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGG-----------------------TDE 71
            + ++  + Y           E +  RP MYIG                        T  
Sbjct: 1   MSGRTVEEIYQKK-----TQHEHILARPDMYIGTIEPVTEDVWVYDEADNVMKLRKCTWT 55

Query: 72  KALHHLFSEVIDNAMDEVIAG-YA-NLIEVSLDG-NGFLTVVDNGRGIPVENHPKFPNKS 128
             L+ +F E++ NA D  +   +    I+V +D   G + V +NG GIPV+ H +  +  
Sbjct: 56  PGLYKIFDEILVNAADNKVRDPHGQTTIKVWVDAARGLVRVYNNGEGIPVQRHREH-DLW 114

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTV--ARQNTIFSQKFSR 186
             E+I   L     +D++  +++GG +G G  + N  S    V    +R    F  ++  
Sbjct: 115 VPEMIFGHLLTSSNYDDTEAKVTGGRNGFGAKLTNVFSTRFEVETVHSRSRKKFFMRWRN 174

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFG--DKAGFDAARLLKMTQSKAYLSGRVKTC 244
            +  +             T +TF PD + F            + +     A  + +   C
Sbjct: 175 NMLENEEAVITPCDGPDYTVVTFYPDFEKFNLEGFTEDMVLIMQRRVYDIAGCTDKSLCC 234

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
           +  D  IA +          FP  +  Y     E +    S                 E 
Sbjct: 235 YLNDTRIACRS---------FPEYVDLYPTMGEERKPSSYSR-----------VNDRWEV 274

Query: 305 AIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMI 364
            +       +  S+ N+I T  GGTH   ++  + + I K  +    K    +    +  
Sbjct: 275 CVRVSNVGFQQVSFVNSIATTRGGTH---VKYIVDQIIAKVTDQAMRKSKTEVKPHMIRP 331

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
                ++  I  P F  QTK  L +  A+      L            +  + ++E  +E
Sbjct: 332 HLFIFVNSLIENPSFDSQTKETLNTPKARFGSTCDLPASLID-----CVLKSSIVERAVE 386

Query: 425 RSEERLRRRKQREVNRKTAIRKLRLP--GKLADCSQNIAHGTELFIVEGDSAGGSAKQA- 481
            +  RL R    ++      + L +P      +     +    L + EGDSA        
Sbjct: 387 MANSRLNREMAMKMRNTNRKQILGIPKLDDANEAGGKYSQRCTLILTEGDSAKALCTAGL 446

Query: 482 --RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKV 538
              NR    V PLRGK LNV  A  +K+    +   + + +G     +Y   + LRY  +
Sbjct: 447 AVENRDYFGVFPLRGKPLNVRDASVKKVMGCAEFQAVSKIMGLDLSQKYTSTEGLRYGHL 506

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQGTK------SVYA 591
           +IM+D D DG+HI  L++   +    DL++    L     P+ +  +  +      ++  
Sbjct: 507 MIMSDQDHDGSHIKGLIINMIHNYWPDLLKVPGFLQQFITPIVKARKKGRGNSDEGTISF 566

Query: 592 HDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651
                  +        G    E+  +KGLG   A + +E   + ++  L  V        
Sbjct: 567 FSMPDYFEWKNAVG-EGIKNYELRYYKGLGTSGAKEGREYFENIDRHRLNFV-----YED 620

Query: 652 LKDTQDSINKLMGTKADERFKFIQE 676
            KD  D +      K DER ++I E
Sbjct: 621 RKDDDDIVMAFAKDKVDERKRWITE 645


>gi|303237810|ref|ZP_07324368.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Prevotella disiens FB035-09AN]
 gi|302482035|gb|EFL45072.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Prevotella disiens FB035-09AN]
          Length = 648

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 195/696 (28%), Positives = 302/696 (43%), Gaps = 102/696 (14%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----EKALHHLFSEVIDNAMDEV 89
             N   S  Y   +IR L  +E VR RPGMYIG        E  ++ L  EVIDN++DE 
Sbjct: 2   AENNKKSVAYTDENIRHLSDMEHVRTRPGMYIGRLGDGKLPEDGIYVLLKEVIDNSIDEF 61

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
                + IE+ ++ N  ++V D GRGIP            L   ++ L+ GGK+D+  ++
Sbjct: 62  KMNEGDRIEIDIEDNLRVSVRDYGRGIPQGK---------LVEAVSMLNTGGKYDSKAFK 112

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
            S GL+GVG+  VNALS +  V   R+  +    F +G   S   K  K  +++GT I F
Sbjct: 113 KSVGLNGVGVKAVNALSSKFEVKSFREGKVRELSFEQGNKKSDNTK--KSTDEQGTYIYF 170

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD  +F +   F    ++ M ++  YL+  +   ++  +                  GL
Sbjct: 171 EPDNTLFKNY-SFHDDIVVTMLRNYTYLNTGLTIMYNGHRI-------------ASRHGL 216

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           +  L   +    L       G+          +E A     +   E  S+ N   T +GG
Sbjct: 217 QDLLTDNMTVDPLYPIVHMKGE---------DIEIAFTHTNQYGEEYYSFVNGQHTTQGG 267

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           TH+S  +  + R IK++               D+    V  ++V + EP F  QTK KL 
Sbjct: 268 THQSAFKEHIARTIKEFFG--------KYEYGDIRNGMVAAIAVNVEEPVFESQTKIKLG 319

Query: 389 SLDAQR-------TVENALRDPFDHYLVQNPIEATKLLEWVIER-SEERLRRRKQREVNR 440
           S             V + ++   D+YL  +  E T +LE  I+    ER       ++ R
Sbjct: 320 STLMAPDGETINKFVGDFIKTNIDNYLHIHKEEFTDILENKIKETERERKAMAGVTKLAR 379

Query: 441 KTAIRKLRLPGKLADCSQNIAH-------GTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
           + A +      KL DC  + +         + +FI EGDSA GS  ++R+ + QAV  LR
Sbjct: 380 ERAKKANLHNRKLRDCRIHFSDAKNDLKEESSIFITEGDSASGSITKSRDVNTQAVFSLR 439

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIAS 553
           GK LN      + +  N++   L  AL            LRY KVI+ TDADVDG HI  
Sbjct: 440 GKPLNCFGLTKKVVYENEEFNLLQAALDIEDGLDT----LRYNKVIVATDADVDGMHIRL 495

Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRIT------QGTK-------------------S 588
           L++TFF Q   +LI++ H++++  PLFR+       +  K                   +
Sbjct: 496 LIITFFLQFFPELIKKGHVYVLQTPLFRVRNKRTKIKNKKIIEEQDAKLRKGDKKSDLVT 555

Query: 589 VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648
           +Y + EE +   +E          EI+RFKGLGE+   +     +    R L +V ++K+
Sbjct: 556 LYCYSEEERINAIEALGPD----PEITRFKGLGEISPDEFVH-FIGPEMR-LEQVTLHKN 609

Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
                  Q+ +   MG    ER  FI E     +D+
Sbjct: 610 ----DQVQNLLEYYMGKNTMERQNFIIENLVIEEDL 641


>gi|224533024|ref|ZP_03673630.1| DNA topoisomerase II domain protein [Borrelia burgdorferi WI91-23]
 gi|224512018|gb|EEF82413.1| DNA topoisomerase II domain protein [Borrelia burgdorferi WI91-23]
          Length = 599

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 198/650 (30%), Positives = 309/650 (47%), Gaps = 66/650 (10%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + NYD S I  L  LE +R+R GMYIG        +  ++ L  E+IDN++DE I GY 
Sbjct: 2   KTQNYDESKIITLSSLEHIRLRSGMYIGRLGDGSNIDDGIYVLIKEIIDNSIDEFIMGYG 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           N I +    N  +++ D GRGIP+           +E + + ++ G K+++  ++ S GL
Sbjct: 62  NEIFIK-KENNLISIRDYGRGIPLGK--------VIESV-SVINTGAKYNDDVFQFSVGL 111

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           +GVG   VNALS +  V   R    F   FS+G  L   E   K  +K GT + F  D +
Sbjct: 112 NGVGTKAVNALSSKFLVRSTRNGKSFEALFSKGKLLESREI--KSSDKDGTYVEFLADSE 169

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IFG    +    L +     A L+  +   ++              + F    GL  +L 
Sbjct: 170 IFGKY-SYSEDFLKRRFFHYACLNKGLIINYND-------------QIFESKNGLLDFLN 215

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
           +++++  L+   ++            T+E+A +          S+ N   T++GGTH++G
Sbjct: 216 SEIKSDDLLYDIVYYSS--------KTLEFAFSHTNNYGETYFSFVNGQYTNDGGTHQTG 267

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            R    R I  +      K+  S    D+    V  LSV I++P F  QTK KL +++ +
Sbjct: 268 FREGFVRAINDF-----LKKTYSPT--DIREGLVATLSVKIKDPIFESQTKNKLGNIETR 320

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
             V   ++      L ++ I A  + + V++    R      R+  R+ A +      KL
Sbjct: 321 GNVAKEVQKIISEILYKDKILAKLIEKKVVDNERLRKELSSVRKEARERAKKISFKIPKL 380

Query: 454 ADCSQNIAH------GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            DC  +          T +F+ EGDSA GS    R+   QA+  LRGK  N+      +I
Sbjct: 381 KDCKFHFNDSSTQSEQTMIFLTEGDSATGSMVSCRDVYTQAIFSLRGKPQNMFEKNKSEI 440

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N+++ +++ ALG         E+LRY KV+I TDAD DG HI +LLLTFF     DLI
Sbjct: 441 YKNEELYNMMVALGIE----ESIENLRYNKVVIATDADFDGFHIRNLLLTFFLTFFEDLI 496

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
              H++++  PLFR+     + Y + EE KQK + E     KG  E++RFKGLGE+  ++
Sbjct: 497 LNGHMYILETPLFRVRNKKITTYCYSEEEKQKAILEL----KGGCEVTRFKGLGEISPNE 552

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
            K   +D N   L +V    DL ++K+ ++ +   MG    ER  FI E 
Sbjct: 553 FKG-FIDINSIKLTKV----DLFNIKEIKEKLGFYMGQNTPERRNFIMEN 597


>gi|327204532|gb|ACB10192.2| DNA gyrase subunit B [Micromonospora tulbaghiae]
          Length = 475

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 170/482 (35%), Positives = 266/482 (55%), Gaps = 10/482 (2%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIG T E+ LHHL  EV+DNA+DE +AG+ + I+V L  +G + V DNGRG PV+ HPK
Sbjct: 1   MYIGSTGERGLHHLVWEVVDNAVDEALAGHCDTIDVVLLADGGVRVTDNGRGFPVDLHPK 60

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
              K  +E+ LT LHAGGKFD   Y +SGGLHGVG+SVVNALS  + V + +   ++ Q+
Sbjct: 61  L-KKPGVEVALTVLHAGGKFDGKAYAVSGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQQ 119

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           ++   P    +   +  ++ G+ ++F PDP +F     FD   + +  Q  A+L+  +  
Sbjct: 120 YNHSKPTPLEK--GEETDRTGSAVSFWPDPDVFET-VDFDFHTIYRRLQEMAFLTRGLTI 176

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
               ++   ++ G   +  F++ GG+  +++    ++S I   +     E+ G    +VE
Sbjct: 177 HLLDERVPEDEDGKTREVTFHYEGGIADFVRHLNASKSPIHKTVVEFGAEETG---MSVE 233

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI-ISDD 361
            A+ W E     + ++ N I T EGGTHE G R ALT  + +Y    +  +       +D
Sbjct: 234 IAMQWNESYGESVYTFANNINTHEGGTHEEGFRAALTSVVNRYGAEKKLLKGDERLSGED 293

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE- 420
           +      I+SV + +P+F GQTKTKL +   +  V+    +    +  +NP EA  +++ 
Sbjct: 294 IREGLAAIISVKLTDPQFEGQTKTKLGNTPVKGFVQRVCNESLVDWFDRNPAEAKIIIQK 353

Query: 421 WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
                      ++ ++   RK+ +    +PGKLADC       +E+FIVEGDSAGGSAKQ
Sbjct: 354 ASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQ 413

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG      +  E LRY K+++
Sbjct: 414 GRDPRVQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGIHDDFDIEKLRYHKIVL 473

Query: 541 MT 542
           M 
Sbjct: 474 MA 475


>gi|228471272|ref|ZP_04056078.1| DNA topoisomerase II domain protein [Porphyromonas uenonis 60-3]
 gi|228306914|gb|EEK16012.1| DNA topoisomerase II domain protein [Porphyromonas uenonis 60-3]
          Length = 673

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 184/710 (25%), Positives = 303/710 (42%), Gaps = 115/710 (16%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-----KALHHLFSEVIDNA 85
           ++P   + SA   Y     R L   E +R RPGMYIG   +       ++ L  EVIDN+
Sbjct: 8   NNPDQLSPSAVAGYTEDDFRTLSWSEHIRKRPGMYIGKLGDGTQADDGIYILIKEVIDNS 67

Query: 86  MDEVIAGYANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144
           +DE + G  + I +++D     + + D GRGIP+           L    + ++ G K D
Sbjct: 68  IDEFVMGVGSEIRITIDGETNEVQIRDYGRGIPLGK---------LVDATSKMNTGAKID 118

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE-KVRNKR 203
           +  ++ S GL+GVG+  VNALS    V   R+    S  + R   ++    +  + + + 
Sbjct: 119 SQAFKKSVGLNGVGLKAVNALSSTFTVQSWREGETSSVTYERAEMIAHTPAEPWEDKEEH 178

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F PD ++F +   +D   +  + ++  YL+  +    +  K             +
Sbjct: 179 GTLVVFTPDAEVFRNSH-YDLRHVEALVRNYCYLNTGLTLYLNDKK-------------Y 224

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTI 322
               GL+ +L   +    L      TG           +E AI   E+  E    + N  
Sbjct: 225 VSRHGLQDFLSDTITGDPLYPIIRLTG---------PDIEVAITHIEQYGEEFYSFVNGQ 275

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T +GGTH +  R  + R IK+++              D+       +S+ I EPEF  Q
Sbjct: 276 YTTQGGTHLTAFREQVARVIKEFSGKG-------FEYGDIRSGMAAAISIRIIEPEFESQ 328

Query: 383 TKTKLVSLDA-----------------QRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
           TK KL S +                  Q+ V + L++  D+YL  +P  +  +L+ +   
Sbjct: 329 TKIKLGSKEMVPQDPMFEHEPLRGVTVQKFVGDFLKEKLDNYLHMHPEISEVMLQTIQAN 388

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHG-------TELFIVEGDSAGGSA 478
             ER       ++ R+ A +      KL DC+++           T +FI EG+SA GS 
Sbjct: 389 ERERKAMSGVTKLARERAKKASLHNKKLRDCTEHYNDPKAKNPELTSIFITEGNSASGSI 448

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538
            Q+R+   QAV  LRGK LN      + +  N++   L  AL          + LRY +V
Sbjct: 449 TQSRDARYQAVFSLRGKPLNSYGLSKKVVYENEEFNLLQAALNIEDGL----DGLRYNRV 504

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT---QGTKSV------ 589
           II TDAD DG HI  L LTFF Q   +L+ + H++++  PL+R++   +  KS+      
Sbjct: 505 IIATDADDDGMHIRLLTLTFFLQFFPELVRRGHVYILETPLYRVSLPAKRKKSITARVAS 564

Query: 590 ----------------------YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
                                 Y + ++     +E          +I+RFKGLGE+ A++
Sbjct: 565 AGKKKGGKKVTIEPASETETSAYCYSDQELNAAVERMGASA----QITRFKGLGEISANE 620

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
            KE   +     L +V + K+ N     +  ++  MG    +R  FI + 
Sbjct: 621 FKELITE-ENIKLRQVSLRKEDN----LKRMLHFYMGKNTPDRQDFIIDN 665


>gi|299141987|ref|ZP_07035121.1| DNA topoisomerase IV [Prevotella oris C735]
 gi|298576449|gb|EFI48321.1| DNA topoisomerase IV [Prevotella oris C735]
          Length = 660

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 187/686 (27%), Positives = 292/686 (42%), Gaps = 100/686 (14%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTD-----EKALHHLFSEVIDNAMDEVIAGYANLIE 98
           Y   +IR L  +E VR RPGMYIG        E  ++ L  EVIDN++DE      N IE
Sbjct: 21  YTDDNIRHLSDMEHVRTRPGMYIGRLGDGNLPEDGIYVLLKEVIDNSIDEFKMKAGNRIE 80

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           + ++ N  ++V D GRGIP            L   ++ L+ GGK+D+  ++ S GL+GVG
Sbjct: 81  IEVEDNLRVSVRDYGRGIPQGK---------LVEAVSMLNTGGKYDSKAFKKSVGLNGVG 131

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           I  VNALS    V   R   +    F +G+  S         ++ GT I F PD  +F D
Sbjct: 132 IKAVNALSSHFEVKSFRDGKVRELTFEKGVKKSDKTL--DTNDENGTYIYFEPDNTLFKD 189

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    +  M ++  YL+  +   ++  +                  GL   L   + 
Sbjct: 190 Y-SFHNDIVETMLRNYTYLNSGLTIMYNGRRI-------------KSRNGLADLLNDNMT 235

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVA 337
           N  L       G+          +E A     +  E    + N   T +GGTH+S  +  
Sbjct: 236 NDGLYPIVHIIGE---------DIEIAFTHTNQYGEEYHSFVNGQHTTQGGTHQSAFKEH 286

Query: 338 LTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR--- 394
           + + IK++          +    D+    V  +++ + EP F  QTK KL S        
Sbjct: 287 IAKTIKEFFN-------KNYEYTDVRNGLVAAIALNVEEPVFESQTKIKLGSTQMAPDGE 339

Query: 395 ----TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
                V + ++   D+YL  +P  A  +   + E   ER       ++ R+ A +     
Sbjct: 340 SINKYVGDFIKLNVDNYLHIHPDVAEVIENKIKESERERKAMAGVTKLARERAKKANLHN 399

Query: 451 GKLADCSQNI-------AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
            KL DC  +           + +FI EGDSA GS  ++R+ + QAV  LRGK LN     
Sbjct: 400 RKLRDCRIHFCDAKNDRKEESSIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSFGLT 459

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            + +  N++   L  AL            LRY KVI+ TDADVDG HI  L++TFF Q  
Sbjct: 460 KKVVYENEEFNLLQAALDIEEGLDT----LRYNKVIVATDADVDGMHIRLLIITFFLQFF 515

Query: 564 YDLIEQKHLFLISPPLFRIT------QGTK-------------------SVYAHDEEHKQ 598
            +LI++ H++++  PLFR+       +  +                   + Y + EE + 
Sbjct: 516 PELIKKGHVYVLQTPLFRVRNKRTKIKNKQVVAEADTRLDRKEKKSDFITRYCYTEEERI 575

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
             +++         EI+RFKGLGE+   +     +  + R L +V ++K+    K     
Sbjct: 576 NAIKDLGPE----PEITRFKGLGEISPDEFVH-FIGPDMR-LEQVTLHKNDQVGK----L 625

Query: 659 INKLMGTKADERFKFIQERASFIDDV 684
           +   MG    ER  FI +     +D+
Sbjct: 626 LEYYMGKNTMERQNFIIDNLVIEEDL 651


>gi|156848882|ref|XP_001647322.1| hypothetical protein Kpol_1002p113 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156118007|gb|EDO19464.1| hypothetical protein Kpol_1002p113 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 1404

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 134/689 (19%), Positives = 269/689 (39%), Gaps = 64/689 (9%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-----------------------KA 73
            ++AS+ Y     + +  LE +  RP  YIG  +                          
Sbjct: 5   EKTASERY-----QKISQLEHILKRPDTYIGSVEVQEQEQWIYNVENESLEEKQVKIVPG 59

Query: 74  LHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLE 131
           L  +F E++ NA D  +       I+V+++     + + ++G+GIP+E H K       E
Sbjct: 60  LFKIFDEILVNAADNKVRDPSMKRIDVNINPEENLIEIKNDGKGIPIEIHDK-EKIYIPE 118

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN--TIFSQKFSRGIP 189
           +I   L     +D+   +++GG +G G  + N  S E  +  A  +    + Q++   + 
Sbjct: 119 LIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADPSTGKKYIQRWEDNMN 178

Query: 190 LSPLEKKEKVRNKR-GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
                K    +N    T+++F+PD K F  +   D    +   +               D
Sbjct: 179 TCHPPKITSYKNSTSYTKVSFKPDLKRFKMEKLDDDVVGVMRRRVYDINGSVRDINVYLD 238

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
            +  +        E Y     K  L    E+   + +     +           E A + 
Sbjct: 239 GKPLKIRNFKSYVELYLKSLEKKKLTESGESTEDLQTPTILYEKVND-----RWEVAFSS 293

Query: 309 CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVG 368
            E + +  S+ N+I T  GGTH + +   + + + +  +        ++    +  +   
Sbjct: 294 SEASFQQVSFVNSIATTSGGTHVNYITDQIVKKVSEAIKKKS---KKTVKPFQIKNNMFI 350

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
            ++  I  P F  QTK +L +       +  L + F + +++           +   ++ 
Sbjct: 351 FINSLIENPAFTSQTKEQLTTRVRDFGSKCELSNVFINKIMKTDFFDK----ILDVANQN 406

Query: 429 RLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK---QARNRS 485
                K+ +  RK  I +               H   L + EGDSA   A        R 
Sbjct: 407 DQNALKKSDGTRKIRITEYPKLEDANKAGTKEGHKCTLILTEGDSALSQAVLGLTVVGRD 466

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDA 544
                PLRGK+LNV  A +++I  N +I  + + +G + + +Y +   LRY  ++IMTD 
Sbjct: 467 YFGCYPLRGKMLNVREASADQINKNAEIEAIKKIMGLQHKKKYEDTKSLRYGHLMIMTDQ 526

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQK-HLFLISPPLFRITQG---TKSVYAHDEEHKQKI 600
           D DG+HI  L++ F       L+     L     P+ ++       +++  ++    +K 
Sbjct: 527 DHDGSHIKGLIINFLETSFPGLLNIPEFLQEFITPIIKVKISKPRKQTIQFYNIPDYEKW 586

Query: 601 LEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660
            +E  ++     +   +KGLG  L  + +E   D ++   +  ++ +D    K  + + +
Sbjct: 587 RDEEGQNCT--WKHKYYKGLGTSLGQEFREYFADLDRHLKIFHQLQED--DKKLIELAFS 642

Query: 661 KLMGTKADERFKFIQER--ASFID-DVGT 686
           K    KAD+R +++++    + +D ++  
Sbjct: 643 K---KKADDRKEWLRQYEPGTVLDPNLDA 668


>gi|71417991|ref|XP_810722.1| DNA topoisomerase II [Trypanosoma cruzi strain CL Brener]
 gi|70875297|gb|EAN88871.1| DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1484

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 141/685 (20%), Positives = 238/685 (34%), Gaps = 83/685 (12%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGG-----------------------TDE 71
            AN++  + Y           E +  RP MYIG                        T  
Sbjct: 1   MANRTVEEIYQKK-----TQHEHILSRPDMYIGTIEPVTEDMWLYDEAENIMKLRKCTWT 55

Query: 72  KALHHLFSEVIDNAMDEVIAGY--ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKS 128
             L+ +F E++ NA D  +        I+V +D   G + V +NG GIPV+ H +  N  
Sbjct: 56  PGLYKIFDEILVNAADNKVRDPLGQTAIKVWIDAERGMVRVYNNGEGIPVQRHREH-NLW 114

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTV--ARQNTIFSQKFSR 186
             E+I   L     +D++  +++GG +G G  + N  S    V    +R    F  ++  
Sbjct: 115 VPEMIFGYLLTSSNYDDTEAKVTGGRNGFGAKLTNVFSTRFEVETVHSRSRKKFFMRWRN 174

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIF--GDKAGFDAARLLKMTQSKAYLSGRVKTC 244
            +  S             T +TF PD   F            + +     A         
Sbjct: 175 NMLESEEPVITPSEGPDYTVVTFYPDFAKFNLQGFGEDMVHMMRRRVYDVAGC------- 227

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
              DK +       +     F   +  Y     E ++   +              G  E 
Sbjct: 228 --TDKSLRCYLNDTKIACSSFLEYVDLYPMMGEERKAASYAR-----------VNGRWEV 274

Query: 305 AIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMI 364
            +       +  S+ N+I T  GGTH   +   +   I K  E  + K    +    +  
Sbjct: 275 CVRVSNIGFQQVSFVNSIATTRGGTHVRYITDQV---IAKVTEQAKRKSKTEVKPHMIRP 331

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
                ++  +  P F  QTK  L +   +      L            I  + ++E  +E
Sbjct: 332 HLFVFINCLVENPGFDSQTKETLNTPKNRFGSTCDLPPSMID-----CILKSSIVERAVE 386

Query: 425 RSEERLRRRKQREVNRKTAIRKLRLP--GKLADCSQNIAHGTELFIVEGDSAGGSAKQA- 481
            +  +L R    ++      + L +P      +     +H   L + EGDSA        
Sbjct: 387 MANSKLTREIASKLRNADRKQILGIPKLDDANEAGGKYSHRCTLILTEGDSAKALCTAGL 446

Query: 482 --RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKV 538
             ++R    V PLRGK LNV  A  +K+    +   + + +G   R +Y   E LRY  +
Sbjct: 447 AVKDRDYFGVFPLRGKPLNVRDATLKKVMACAEFQAVSKIMGLDIRQKYSGVERLRYGHL 506

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQGTKS------VYA 591
           +IM+D D DG+HI  L++   +    DLI+    L     P+ +  +  +S      +  
Sbjct: 507 MIMSDQDHDGSHIKGLIINMIHHYWPDLIKTPGFLQQFITPIVKARKKGRSDGDDRAISF 566

Query: 592 HDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651
                  +        G    EI  +KGLG   A + +E   + ++  L  V        
Sbjct: 567 FSMPDYFEWKNAIG-DGIRNYEIRYYKGLGTSGAKEGREYFENIDRHRLDFVH-----ED 620

Query: 652 LKDTQDSINKLMGTKADERFKFIQE 676
             D    +      K +ER  +I +
Sbjct: 621 ATDDARIVMAFAKDKVEERKHWITQ 645


>gi|221217488|ref|ZP_03588959.1| DNA topoisomerase II (N- region) domain protein [Borrelia
           burgdorferi 72a]
 gi|221192766|gb|EEE18982.1| DNA topoisomerase II (N- region) domain protein [Borrelia
           burgdorferi 72a]
          Length = 599

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 198/650 (30%), Positives = 308/650 (47%), Gaps = 66/650 (10%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + NYD S I  L  LE +R+R GMYIG        +  ++ L  E+IDN++DE I GY 
Sbjct: 2   KTQNYDESKIITLSSLEHIRLRSGMYIGRLGDGSNIDDGIYVLIKEIIDNSIDEFIMGYG 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           N I +    N  +++ D GRGIP+           +E + + ++ G K+++  ++ S GL
Sbjct: 62  NEIFIK-KENNLISIRDYGRGIPLGK--------VIESV-SVINTGAKYNDDVFQFSVGL 111

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           +GVG   VNALS +  V   R    F   FS+G  L   E   K  +K GT + F  D +
Sbjct: 112 NGVGTKAVNALSSKFLVRSTRNGKSFEALFSKGKLLESREI--KSSDKDGTYVEFLADSE 169

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IFG    +    L +     A L+  +   ++              + F    GL  +L 
Sbjct: 170 IFGKY-SYSEDFLKRRFFHYACLNKGLIINYND-------------QIFESKNGLLDFLN 215

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
            ++++  L+   ++            T+E+A +          S+ N   T++GGTH++G
Sbjct: 216 LEIKSDDLLYDIVYYSS--------KTLEFAFSHTNNYGETYFSFVNGQYTNDGGTHQTG 267

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            R    R I  +      K+  S    D+    V  LSV I++P F  QTK KL +++ +
Sbjct: 268 FREGFVRAINDF-----LKKTYSST--DIREGLVATLSVKIKDPIFESQTKNKLGNIETR 320

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
             V   ++      L ++ I A  + + V++    R      R+  R+ A +      KL
Sbjct: 321 GNVAKEVQKIISEILYKDKILAKLIEKKVVDNERLRKELSSVRKEARERAKKISFKIPKL 380

Query: 454 ADCSQNIAH------GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            DC  +          T +F+ EGDSA GS    R+   QA+  LRGK  N+      +I
Sbjct: 381 KDCKFHFNDSSTQSEQTMIFLTEGDSATGSMVSCRDVYTQAIFSLRGKPQNMFEKNKSEI 440

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N+++ +++ ALG         E+LRY KV+I TDAD DG HI +LLLTFF     DLI
Sbjct: 441 YKNEELYNMMVALGIE----ESIENLRYNKVVIATDADFDGFHIRNLLLTFFLTFFEDLI 496

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
              H++++  PLFR+     + Y + EE KQK + E     KG  E++RFKGLGE+  ++
Sbjct: 497 LNGHMYILETPLFRVRNKKITTYCYSEEEKQKAILEL----KGGCEVTRFKGLGEISPNE 552

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
            K   +D N   L +V    DL ++K+ ++ +   MG    ER  FI E 
Sbjct: 553 FKG-FIDINSIKLTKV----DLFNIKEIKEKLGFYMGQNTPERRNFIMEN 597


>gi|216264324|ref|ZP_03436316.1| DNA topoisomerase II (N- region) domain protein [Borrelia
           burgdorferi 156a]
 gi|224533936|ref|ZP_03674521.1| DNA topoisomerase II domain protein [Borrelia burgdorferi CA-11.2a]
 gi|215980797|gb|EEC21604.1| DNA topoisomerase II (N- region) domain protein [Borrelia
           burgdorferi 156a]
 gi|224512939|gb|EEF83305.1| DNA topoisomerase II domain protein [Borrelia burgdorferi CA-11.2a]
 gi|312148155|gb|ADQ30814.1| DNA topoisomerase II (N- region) domain protein [Borrelia
           burgdorferi JD1]
          Length = 599

 Score =  367 bits (941), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 198/650 (30%), Positives = 309/650 (47%), Gaps = 66/650 (10%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + NYD S I  L  LE +R+R GMYIG        +  ++ L  E+IDN++DE I GY 
Sbjct: 2   KTQNYDESKIITLSSLEHIRLRSGMYIGRLGDGSNIDDGIYVLIKEIIDNSIDEFIMGYG 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           N I +    N  +++ D GRGIP+           +E + + ++ G K+++  ++ S GL
Sbjct: 62  NEIFIK-KENNLISIRDYGRGIPLGK--------VIESV-SVINTGAKYNDDVFQFSVGL 111

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           +GVG   VNALS +  V   R    F   FS+G  L   E   K  +K GT + F  D +
Sbjct: 112 NGVGTKAVNALSSKFLVRSTRNGKSFEALFSKGKLLESREI--KSSDKDGTYVEFLADSE 169

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IFG    +    L +     A L+  +   ++              + F    GL  +L 
Sbjct: 170 IFGKY-SYSEDFLKRRFFHYACLNKGLIINYND-------------QIFESKNGLLDFLN 215

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
           +++++  L+   ++            T+E+A +          S+ N   T++GGTH++G
Sbjct: 216 SEIKSDDLLYDIVYYSS--------KTLEFAFSHTNNYGETYFSFVNGQYTNDGGTHQTG 267

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            R    R I  +      K+  S    D+    V  LSV I++P F  QTK KL +++ +
Sbjct: 268 FREGFVRAINDF-----LKKTYSST--DIREGLVATLSVKIKDPIFESQTKNKLGNIETR 320

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
             V   ++      L ++ I A  + + V++    R      R+  R+ A +      KL
Sbjct: 321 GNVAKEVQKIISEILYKDKILAKLIEKKVVDNERLRKELSSVRKEARERAKKISFKIPKL 380

Query: 454 ADCSQNIAH------GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            DC  +          T +F+ EGDSA GS    R+   QA+  LRGK  N+      +I
Sbjct: 381 KDCKFHFNDSSTQSEQTMIFLTEGDSATGSMVSCRDVYTQAIFSLRGKPQNMFEKNKSEI 440

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N+++ +++ ALG         E+LRY KV+I TDAD DG HI +LLLTFF     DLI
Sbjct: 441 YKNEELYNMMVALGIE----ESIENLRYNKVVIATDADFDGFHIRNLLLTFFLTFFEDLI 496

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
              H++++  PLFR+     + Y + EE KQK + E     KG  E++RFKGLGE+  ++
Sbjct: 497 LNGHMYILETPLFRVRNKKITTYCYSEEEKQKAILEL----KGGCEVTRFKGLGEISPNE 552

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
            K   +D N   L +V    DL ++K+ ++ +   MG    ER  FI E 
Sbjct: 553 FKG-FIDINSIKLTKV----DLFNIKEIKEKLGFYMGQNTPERRNFIMEN 597


>gi|224534911|ref|ZP_03675480.1| DNA topoisomerase II domain protein [Borrelia spielmanii A14S]
 gi|224513851|gb|EEF84176.1| DNA topoisomerase II domain protein [Borrelia spielmanii A14S]
          Length = 599

 Score =  367 bits (941), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 198/650 (30%), Positives = 310/650 (47%), Gaps = 66/650 (10%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + NYD S I  L  LE +R+R GMYIG        +  ++ L  E+IDN++DE I GY 
Sbjct: 2   KTQNYDESKIITLSSLEHIRLRSGMYIGRLGDGSNIDDGIYILIKEIIDNSIDEFIMGYG 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           N I +    N  +T+ D GRGIP+           +E + + ++ G K+++  ++ S GL
Sbjct: 62  NEIFIK-KQNNLITIRDYGRGIPLGK--------VVESV-SVINTGAKYNDDVFQFSVGL 111

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           +GVG   VNALS +  V   R    F   FS+G  L   E   +  +K GT + F  D +
Sbjct: 112 NGVGTKAVNALSSKFLVRSIRNGKSFEALFSKGNLLESREI--ESSDKDGTYVEFLADSE 169

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IFG    +    L +     A L+  +   ++              + F    GL  +L 
Sbjct: 170 IFGKY-SYSEDFLKRRFFHYACLNKGLIINYND-------------QIFESKNGLLDFLN 215

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
           +++++  L+   ++            T+E+A +          S+ N   T++GGTH++G
Sbjct: 216 SEIKSDDLLYDIVYYSS--------KTLEFAFSHTNNYGETYFSFVNGQYTNDGGTHQTG 267

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            R    R I  +      K+  S    D+    V  LSV I++P F  QTK KL +++ +
Sbjct: 268 FREGFVRAINDF-----LKKTYSST--DIREGLVATLSVKIKDPIFESQTKNKLGNIETR 320

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
             V   ++      L ++ I A  + + V++    R      R+  R+ A +      KL
Sbjct: 321 GNVAKEVQKIISEILYKDKILAKLIEKKVVDNERLRKELSSVRKEARERAKKISFKIPKL 380

Query: 454 ADCSQNIA------HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            DC  +          T +F+ EGDSA GS    R+   QA+  LRGK  N+      +I
Sbjct: 381 KDCKFHFNSSSNQSEQTMIFLTEGDSATGSMVSCRDVYTQAIFSLRGKPQNMFEKNKSEI 440

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N+++ +++ ALG         E+LRY KV+I TDAD DG HI +LLLTFF     DLI
Sbjct: 441 YKNEELYNMMVALGIE----ESIENLRYNKVVIATDADFDGFHIRNLLLTFFLTFFEDLI 496

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
              H++++  PLFR+     ++Y + EE KQK + +     KG  E++RFKGLGE+  ++
Sbjct: 497 LNGHMYILETPLFRVRNKKNTIYCYSEEEKQKAVLQL----KGGCEVTRFKGLGEISPNE 552

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
            K   +D N   L +V    DL ++K+ +D +   MG    ER  FI E 
Sbjct: 553 FKG-FIDINSIKLTKV----DLFNIKEIKDKLGFYMGQNTPERRNFIMEN 597


>gi|325119604|emb|CBZ55157.1| hypothetical protein NCLIV_055820 [Neospora caninum Liverpool]
          Length = 1641

 Score =  367 bits (941), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 151/758 (19%), Positives = 272/758 (35%), Gaps = 94/758 (12%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           M+    + F +    S   S           S     ++    Y   S      LE + +
Sbjct: 1   MSSSEDEDFQS---SSPSRSPPRSTPENGKKSGGGKPKTIEQRYQKKS-----QLEHILL 52

Query: 61  RPGMYIGGTD-----------------------EKALHHLFSEVIDNAMD-EVIAG---- 92
           RP  YIG T+                          L+ +  E++ NA D +   G    
Sbjct: 53  RPDTYIGSTEMHTQSLWVMEEGQECMVYKTINYVPGLYKIVDEILVNAADVKAREGEEKK 112

Query: 93  ---------YANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142
                      + I++ ++ + G +T+ ++G GIPV  H +       E+I   L     
Sbjct: 113 GKPLKPGARRMSAIKIDINKSAGRITIWNDGEGIPVAIHQEH-KVYVPEMIFGQLLTSDN 171

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQN--TIFSQKFSRGIPLSPLEKKEKVR 200
           +D+S   ++GG +G G  + N  S E  V  A       F   ++R +      +     
Sbjct: 172 YDDSECRVTGGRNGYGAKLTNIFSSEFTVECADGERKKKFKMTWTRNMGQKTEPEISSYN 231

Query: 201 NKRGTRITFRPDPKIFGD--KAGFDAARLLKMTQSKAYLSGRVKTC------------WS 246
                +I+F PD   FG         + L K     A  +G                 + 
Sbjct: 232 GTDYVKISFVPDFAKFGMRGFDDDSLSLLRKRAYDLAGTAGVRVFLNGTRIDVSSFSQYV 291

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE--- 303
                  K   P KE+     G  +        +    ++      +        VE   
Sbjct: 292 DLYLGGRKSEKPRKEKDEDDAGDDSDDDWDEGPKRKKGAKKRKKDGQDDEETENGVETKV 351

Query: 304 ------------WAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN 351
                          +      +  S+ N+I T +GG+H + +   L   I K    T+N
Sbjct: 352 IKIHEKQWRWEIVISSTDGGQFQQVSFVNSICTTKGGSHVTHVLEPLLAAIVK-KANTKN 410

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K  + I +  +       +S  I  P F  QTK  L +  A+   +  L D     +V++
Sbjct: 411 KGGMEIKAAHVKQHLWIFVSCLIVNPAFDSQTKETLTTKPAKFGSKCTLADKTIGAVVKS 470

Query: 412 PIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
            I    +L    ++  E  ++ K  +   +  +  +       D     +    L + EG
Sbjct: 471 SIVENVVLWAQTKQQVELRKQMKVGKTKGRERLSGIPKLEDANDAGGRHSQECTLILTEG 530

Query: 472 DSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528
           DSA  S     +   R    V PLRGK+LNV  A  +++  N++I ++++ +G +   + 
Sbjct: 531 DSAKTSCLAGLSVVGRDRYGVFPLRGKLLNVRDASFKQLTENKEIQNILKIVGLQVNDRT 590

Query: 529 REED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE-QKHLFLISPPLFRITQGT 586
            +   LRY  V+IMTD D DG+HI  LL+   +     L++ +  L     P+ ++++  
Sbjct: 591 EDARGLRYGSVMIMTDQDHDGSHIKGLLINMMHHYWPQLLKCRGFLKAFLTPIVKVSKNN 650

Query: 587 KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646
                +     ++        G     I  +KGLG     + KE   D +K  +  V   
Sbjct: 651 VEKAFYTIPEYEQWKRSCNTTG---WRIKYYKGLGTSTDREFKEYFNDLSKHQIDFV--W 705

Query: 647 KDLNSLKDTQDSINKLMGTKADERFKFIQER--ASFID 682
              +  +    + NK    +A++R +++Q     +F+D
Sbjct: 706 SGQHDGELIDMAFNK---RRAEDRKRWLQSYQEGTFVD 740


>gi|281424898|ref|ZP_06255811.1| putative DNA topoisomerase IV, B subunit [Prevotella oris F0302]
 gi|281401016|gb|EFB31847.1| putative DNA topoisomerase IV, B subunit [Prevotella oris F0302]
          Length = 660

 Score =  367 bits (941), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 186/686 (27%), Positives = 292/686 (42%), Gaps = 100/686 (14%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTD-----EKALHHLFSEVIDNAMDEVIAGYANLIE 98
           Y   +IR L  +E VR RPGMYIG        E  ++ L  EVIDN++DE      + IE
Sbjct: 21  YTDDNIRHLSDMEHVRTRPGMYIGRLGDGNLPEDGIYVLLKEVIDNSIDEFKMKAGDRIE 80

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           + ++ N  ++V D GRGIP            L   ++ L+ GGK+D+  ++ S GL+GVG
Sbjct: 81  IEVENNLRVSVRDYGRGIPQGK---------LVEAVSMLNTGGKYDSKAFKKSVGLNGVG 131

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           I  VNALS    V   R   +    F +G+  S         ++ GT I F PD  +F D
Sbjct: 132 IKAVNALSSHFEVKSFRDGKVRELTFEKGVKKSDKTL--DTNDENGTYIYFEPDNTLFKD 189

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    +  M ++  YL+  +   ++  +                  GL   L   + 
Sbjct: 190 Y-SFHNDIVETMLRNYTYLNSGLTIMYNGRRI-------------KSRNGLADLLNDNMT 235

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVA 337
           N  L       G+          +E A     +  E    + N   T +GGTH+S  +  
Sbjct: 236 NDGLYPIVHIIGE---------DIEIAFTHTNQYGEEYHSFVNGQHTTQGGTHQSAFKEH 286

Query: 338 LTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR--- 394
           + + IK++          +    D+    V  +++ + EP F  QTK KL S        
Sbjct: 287 IAKTIKEFFN-------KNYEYTDVRNGLVAAIALNVEEPVFESQTKIKLGSTQMAPDGE 339

Query: 395 ----TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
                V + ++   D+YL  +P  A  +   + E   ER       ++ R+ A +     
Sbjct: 340 SINKYVGDFIKLNVDNYLHIHPDVAEVIENKIKESERERKAMAGVTKLARERAKKANLHN 399

Query: 451 GKLADCSQNI-------AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
            KL DC  +           + +FI EGDSA GS  ++R+ + QAV  LRGK LN     
Sbjct: 400 RKLRDCRIHFCDAKNDRKEESSIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSFGLT 459

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            + +  N++   L  AL            LRY KVI+ TDADVDG HI  L++TFF Q  
Sbjct: 460 KKVVYENEEFNLLQAALDIEEGLDT----LRYNKVIVATDADVDGMHIRLLIITFFLQFF 515

Query: 564 YDLIEQKHLFLISPPLFRIT------QGTK-------------------SVYAHDEEHKQ 598
            +LI++ H++++  PLFR+       +  +                   + Y + EE + 
Sbjct: 516 PELIKKGHVYVLQTPLFRVRNKRTKIKNKQVVAEADTRLDRKEKKSDFITRYCYTEEERI 575

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
             +++         EI+RFKGLGE+   +     +  + R L +V ++K+    K     
Sbjct: 576 NAIKDLGPE----PEITRFKGLGEISPDEFVH-FIGPDMR-LEQVTLHKNDQVGK----L 625

Query: 659 INKLMGTKADERFKFIQERASFIDDV 684
           +   MG    ER  FI +     +D+
Sbjct: 626 LEYYMGKNTMERQNFIIDNLVIEEDL 651


>gi|312149598|gb|ADQ29669.1| DNA topoisomerase II (N- region) domain protein [Borrelia
           burgdorferi N40]
          Length = 599

 Score =  367 bits (941), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 198/650 (30%), Positives = 309/650 (47%), Gaps = 66/650 (10%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + NYD S I  L  LE +R+R GMYIG        +  ++ L  E+IDN++DE I GY 
Sbjct: 2   KTQNYDESKIITLSSLEHIRLRSGMYIGRLGDGSNIDDGIYVLIKEIIDNSIDEFIMGYG 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           N I +    N  +++ D GRGIP+           +E + + ++ G K+++  ++ S GL
Sbjct: 62  NEIFIK-KENNLISIRDYGRGIPLGK--------VIESV-SVINTGAKYNDDVFQFSVGL 111

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           +GVG   VNALS +  V   R    F   FS+G  L   E   K  +K GT + F  D +
Sbjct: 112 NGVGTKAVNALSSKFLVRSTRNGKSFEALFSKGKLLESREI--KSSDKDGTYVEFLADSE 169

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IFG    +    L +     A L+  +   ++              + F    GL  +L 
Sbjct: 170 IFGKY-SYSEDFLKRRFFHYACLNKGLIINYND-------------QIFESKNGLLDFLN 215

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
           +++++  L+   ++            T+E+A +          S+ N   T++GGTH++G
Sbjct: 216 SEIKSDDLLYDIVYYSS--------KTLEFAFSHTNNYGETYFSFVNGQYTNDGGTHQTG 267

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            R    R I  +      K+  S    D+    V  LSV I++P F  QTK KL +++ +
Sbjct: 268 FREGFVRAINDF-----LKKTYSST--DIREGLVATLSVKIKDPIFESQTKNKLGNIETR 320

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
             V   ++      L ++ I A  + + V++    R      R+  R+ A +      KL
Sbjct: 321 GNVAKEVQKIISEILYKDKILAKLIEKKVVDNERLRKELSSVRKEARERAKKISFKIPKL 380

Query: 454 ADCSQNIAH------GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            DC  +          T +F+ EGDSA GS    R+   QA+  LRGK  N+      +I
Sbjct: 381 KDCKFHFNDRSTQSEQTMIFLTEGDSATGSMVSCRDVYTQAIFSLRGKPQNMFEKNKSEI 440

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N+++ +++ ALG         E+LRY KV+I TDAD DG HI +LLLTFF     DLI
Sbjct: 441 YKNEELYNMMVALGIE----ESIENLRYNKVVIATDADFDGFHIRNLLLTFFLTFFEDLI 496

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
              H++++  PLFR+     + Y + EE KQK + E     KG  E++RFKGLGE+  ++
Sbjct: 497 LNGHMYILETPLFRVRNKKITTYCYSEEEKQKAILEL----KGGCEVTRFKGLGEISPNE 552

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
            K   +D N   L +V    DL ++K+ ++ +   MG    ER  FI E 
Sbjct: 553 FKG-FIDINSIKLTKV----DLFNIKEIKEKLGFYMGQNTPERRNFIMEN 597


>gi|282880548|ref|ZP_06289255.1| DNA topoisomerase IV subunit B [Prevotella timonensis CRIS 5C-B1]
 gi|281305651|gb|EFA97704.1| DNA topoisomerase IV subunit B [Prevotella timonensis CRIS 5C-B1]
          Length = 670

 Score =  367 bits (941), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 194/715 (27%), Positives = 308/715 (43%), Gaps = 101/715 (14%)

Query: 16  SQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD----- 70
           ++  + KL+ S +   S +   Q+    Y   +IR L  +E VR RPGMYIG        
Sbjct: 2   TEKINTKLENSQQNKKSVSPQQQADVVAYTDDNIRHLSDMEHVRTRPGMYIGRLGDGKLP 61

Query: 71  EKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTL 130
           E  ++ L  EV+DN++DE      + IE+ ++ N  + V D GRGIP            L
Sbjct: 62  EDGIYVLLKEVLDNSIDEFKMKAGDRIEIDIEDNLRVRVRDYGRGIPQGK---------L 112

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
              ++ L+ GGK+D+  ++ S GL+GVGI  VNALS    V   R+  +    F +G   
Sbjct: 113 VEAVSVLNTGGKYDSKAFKKSVGLNGVGIKAVNALSAHFEVESFREGKVRKLTFEKGDMK 172

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +   K  K  ++ GT I F PD         F    +  M ++  YL+  +   ++  + 
Sbjct: 173 TD--KTTKTSDESGTYIYFEPD-DTLFKNYSFHDDIVETMLRNYTYLNAGLTIMYNGRRI 229

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                            GL+  L   +    L       G+          +E A     
Sbjct: 230 -------------KSRNGLEDLLNDNMTTDGLYPIIHMIGE---------DIEIAFTHTN 267

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGI 369
           +   E  S+ N   T +GGTH+S  +  + + IK++ +        +    D+    VG 
Sbjct: 268 QYGEEYYSFVNGQHTTQGGTHQSAFKEHIAKTIKEFFD-------KNYEYTDIRNGIVGA 320

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQR-------TVENALRDPFDHYLVQNPIEATKLLEWV 422
           +++ + EP F  QTK KL S             V + ++   D+YL  +  +   +LE  
Sbjct: 321 IAINVEEPVFESQTKIKLGSTQMAPGGETINKYVGDFIKREVDNYLHIHKEDCADILEAK 380

Query: 423 IERSE-ERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGT-------ELFIVEGDSA 474
           I+ SE ER       ++ R+ A +      KL DC  + +           +FI EGDSA
Sbjct: 381 IKSSEHERKAMAGVTKLARERAKKANLHNRKLRDCRIHFSDEKNDRKEESCIFITEGDSA 440

Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
            GS  ++R+ + QAV  LRGK LN      + +  N++   L  AL            LR
Sbjct: 441 SGSITKSRDVNTQAVFSLRGKPLNSFGLTKKVVYENEEFNLLQAALDIEDGLDT----LR 496

Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTK------- 587
           Y KVI+ TDADVDG HI  L++TFF Q   +LI++ H++++  PLFR+            
Sbjct: 497 YNKVIVATDADVDGMHIRLLIITFFLQFFPELIKKGHVYVLQTPLFRVRNKRTKIKNKDV 556

Query: 588 ------------------SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
                             + Y + EE +Q+ ++E         EI+RFKGLGE+   +  
Sbjct: 557 IAEADEKLDKKDRKSDFITRYCYSEEERQEAIKELGPD----PEITRFKGLGEISPDEFV 612

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
              +  + R L +V ++K+       Q  +   MG    ER  FI +     +D+
Sbjct: 613 H-FIGPDMR-LEQVTLHKN----DQVQKLLEYYMGKNTMERQNFIIDNLVVEEDI 661


>gi|15594382|ref|NP_212170.1| DNA topoisomerase IV subunit B [Borrelia burgdorferi B31]
 gi|195941776|ref|ZP_03087158.1| DNA topoisomerase IV subunit B [Borrelia burgdorferi 80a]
 gi|218249859|ref|YP_002374570.1| DNA topoisomerase II (N- region) domain protein [Borrelia
           burgdorferi ZS7]
 gi|223889201|ref|ZP_03623790.1| DNA topoisomerase II (N- region) domain protein [Borrelia
           burgdorferi 64b]
 gi|225549309|ref|ZP_03770282.1| DNA topoisomerase II domain protein [Borrelia burgdorferi 94a]
 gi|226322049|ref|ZP_03797574.1| DNA topoisomerase II domain protein [Borrelia burgdorferi Bol26]
 gi|3914288|sp|Q59189|PARE_BORBU RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|2687909|gb|AAC66418.1| DNA topoisomerase IV (parE) [Borrelia burgdorferi B31]
 gi|218165047|gb|ACK75108.1| DNA topoisomerase II (N- region) domain protein [Borrelia
           burgdorferi ZS7]
 gi|223885450|gb|EEF56551.1| DNA topoisomerase II (N- region) domain protein [Borrelia
           burgdorferi 64b]
 gi|225370167|gb|EEG99607.1| DNA topoisomerase II domain protein [Borrelia burgdorferi 94a]
 gi|226232639|gb|EEH31393.1| DNA topoisomerase II domain protein [Borrelia burgdorferi Bol26]
          Length = 599

 Score =  367 bits (941), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 198/650 (30%), Positives = 309/650 (47%), Gaps = 66/650 (10%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + NYD S I  L  LE +R+R GMYIG        +  ++ L  E+IDN++DE I GY 
Sbjct: 2   KTQNYDESKIITLSSLEHIRLRSGMYIGRLGDGSNIDDGIYVLIKEIIDNSIDEFIMGYG 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           N I +    N  +++ D GRGIP+           +E + + ++ G K+++  ++ S GL
Sbjct: 62  NEIFIK-KENNLISIRDYGRGIPLGK--------VIESV-SVINTGAKYNDDVFQFSVGL 111

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           +GVG   VNALS +  V   R    F   FS+G  L   E   K  +K GT + F  D +
Sbjct: 112 NGVGTKAVNALSSKFLVRSTRNGKSFEALFSKGKLLESREI--KSSDKDGTYVEFLADSE 169

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IFG    +    L +     A L+  +   ++              + F    GL  +L 
Sbjct: 170 IFGKY-SYSEDFLKRRFFHYACLNKGLIINYND-------------QIFESKNGLLDFLN 215

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
           +++++  L+   ++            T+E+A +          S+ N   T++GGTH++G
Sbjct: 216 SEIKSDDLLYDIVYYSS--------KTLEFAFSHTNNYGETYFSFVNGQYTNDGGTHQTG 267

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            R    R I  +      K+  S    D+    V  LSV I++P F  QTK KL +++ +
Sbjct: 268 FREGFVRAINDF-----LKKTYSST--DIREGLVATLSVKIKDPIFESQTKNKLGNIETR 320

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
             V   ++      L ++ I A  + + V++    R      R+  R+ A +      KL
Sbjct: 321 GNVAKEVQKIISEILYKDKILAKLIEKKVVDNERLRKELSSVRKEARERAKKISFKIPKL 380

Query: 454 ADCSQNIAH------GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            DC  +          T +F+ EGDSA GS    R+   QA+  LRGK  N+      +I
Sbjct: 381 KDCKFHFNDSSKQSEQTMIFLTEGDSATGSMVSCRDVYTQAIFSLRGKPQNMFEKNKSEI 440

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N+++ +++ ALG         E+LRY KV+I TDAD DG HI +LLLTFF     DLI
Sbjct: 441 YKNEELYNMMVALGIE----ESIENLRYNKVVIATDADFDGFHIRNLLLTFFLTFFEDLI 496

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
              H++++  PLFR+     + Y + EE KQK + E     KG  E++RFKGLGE+  ++
Sbjct: 497 LNGHMYILETPLFRVRNKKITTYCYSEEEKQKAILEL----KGGCEVTRFKGLGEISPNE 552

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
            K   +D N   L +V    DL ++K+ ++ +   MG    ER  FI E 
Sbjct: 553 FKG-FIDINSIKLTKV----DLFNIKEIKEKLGFYMGQNTPERRNFIMEN 597


>gi|225549741|ref|ZP_03770706.1| DNA topoisomerase II domain protein [Borrelia burgdorferi 118a]
 gi|225369701|gb|EEG99149.1| DNA topoisomerase II domain protein [Borrelia burgdorferi 118a]
          Length = 599

 Score =  367 bits (941), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 197/650 (30%), Positives = 309/650 (47%), Gaps = 66/650 (10%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + NYD S I  L  LE +R+R GMYIG        +  ++ L  E+IDN++DE I GY 
Sbjct: 2   KTQNYDESKIITLSSLEHIRLRSGMYIGRLGDGSNIDDGIYVLIKEIIDNSIDEFIMGYG 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           N I +    N  +++ D GRGIP+           +E + + ++ G K+++  ++ S GL
Sbjct: 62  NEIFIK-KENNLISIRDYGRGIPLGK--------VIESV-SVINTGAKYNDDVFQFSVGL 111

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           +GVG   VNALS +  V   R    F   FS+G  L   E   K  +K GT + F  D +
Sbjct: 112 NGVGTKAVNALSSKFLVRSTRNGKSFEALFSKGKLLESREI--KSSDKDGTYVEFLADSE 169

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IFG    +    L +     A L+  +   ++              + F    GL  +L 
Sbjct: 170 IFGKY-SYSEDFLKRRFFHYACLNKGLIINYND-------------QIFESKNGLLDFLN 215

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
           +++++  L+   ++            T+E+A +          S+ N   T++GGTH++G
Sbjct: 216 SEIKSDDLLYDIVYYSS--------KTLEFAFSHTNNYGETYFSFVNGQYTNDGGTHQTG 267

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            R    R I  +      K+  S    D+    +  LSV I++P F  QTK KL +++ +
Sbjct: 268 FREGFVRAINDF-----LKKTYSST--DIREGLIATLSVKIKDPIFESQTKNKLGNIETR 320

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
             V   ++      L ++ I A  + + V++    R      R+  R+ A +      KL
Sbjct: 321 GNVAKEVQKIISEILYKDKILAKLIEKKVVDNERLRKELSSVRKEARERAKKISFKIPKL 380

Query: 454 ADCSQNIAH------GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            DC  +          T +F+ EGDSA GS    R+   QA+  LRGK  N+      +I
Sbjct: 381 KDCKFHFNDSSTQSEQTMIFLTEGDSATGSMVSCRDVYTQAIFSLRGKPQNMFEKNKSEI 440

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N+++ +++ ALG         E+LRY KV+I TDAD DG HI +LLLTFF     DLI
Sbjct: 441 YKNEELYNMMVALGIE----ESIENLRYNKVVIATDADFDGFHIRNLLLTFFLTFFEDLI 496

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
              H++++  PLFR+     + Y + EE KQK + E     KG  E++RFKGLGE+  ++
Sbjct: 497 LNGHMYILETPLFRVRNKKITTYCYSEEEKQKAILEL----KGGCEVTRFKGLGEISPNE 552

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
            K   +D N   L +V    DL ++K+ ++ +   MG    ER  FI E 
Sbjct: 553 FKG-FIDINSIKLTKV----DLFNIKEIKEKLGFYMGQNTPERRNFIMEN 597


>gi|213584808|ref|ZP_03366634.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 427

 Score =  366 bits (940), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 160/435 (36%), Positives = 248/435 (57%), Gaps = 17/435 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 5   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 64

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 65  TIHADNSVSVTDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 123

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R   I  Q +  G+P +PL       +K GT + F P  + F + 
Sbjct: 124 SVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWPSHETFTNV 182

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 183 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 235

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 236 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 292

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 293 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 352

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+        RR +    RK A+    LPGKLAD
Sbjct: 353 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 412

Query: 456 CSQNIAHGTELFIVE 470
           C +     +EL++VE
Sbjct: 413 CQERDPALSELYLVE 427


>gi|15834657|ref|NP_296416.1| DNA topoisomerase IV subunit B [Chlamydia muridarum Nigg]
 gi|270284822|ref|ZP_06194216.1| DNA topoisomerase IV subunit B [Chlamydia muridarum Nigg]
 gi|270288851|ref|ZP_06195153.1| DNA topoisomerase IV subunit B [Chlamydia muridarum Weiss]
 gi|301336202|ref|ZP_07224404.1| DNA topoisomerase IV subunit B [Chlamydia muridarum MopnTet14]
 gi|7190072|gb|AAF38923.1| DNA gyrase, subunit B [Chlamydia muridarum Nigg]
          Length = 605

 Score =  366 bits (940), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 175/652 (26%), Positives = 294/652 (45%), Gaps = 64/652 (9%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           Y  +SI  L  L+ +R+R GMYIG        E  ++ LF EV+DNA+DE + G+ + I 
Sbjct: 7   YSEASIISLASLDHIRLRAGMYIGRLGDGSQSEDGVYTLFKEVVDNAIDEFVMGHGHTIF 66

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           ++ D    L++ D GRGIP+           +   ++ ++ G K++   +  S GL+GVG
Sbjct: 67  ITGDS-QKLSIRDEGRGIPLGK---------VIDCVSKINTGAKYNQDVFHFSVGLNGVG 116

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +  VNALS    V   R        FS+G  +    ++   ++  GT I+F PD ++F +
Sbjct: 117 LKAVNALSQHFSVRSVRNKKFLKASFSKG--ILLHTEQGDTQDADGTEISFSPDKELFEN 174

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +   YL   +   ++ +              F    GL    + +++
Sbjct: 175 F-SFHDEFLKKKIRQYTYLHPGLTILYNGE-------------TFVSKLGLADLFEEEIQ 220

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
              L     F         H             + +  S+ N   T +GGTH    +  +
Sbjct: 221 TPLLYPPIAFQ--------HPDLSFLFSHTETSSEQYFSFVNGQETTDGGTHLIAFKEGV 272

Query: 339 TRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +GI ++      K+  +  + D+     G +++ I  P F  QTK KL + + +  +  
Sbjct: 273 VKGINEFF-----KK--NFSAQDIRDGIAGCIAIKIASPIFESQTKNKLGNTNIRADLAK 325

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            +++     L ++P  A ++ E +    + R   +  ++  +    +      KL DC  
Sbjct: 326 RVKEAVILTLKKHPSSADRIQEKIKLNEKTRKNAQFLKQELKDKQKKLHYKIPKLRDCKF 385

Query: 459 N------IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           +        + + +FI EG+SA  S   +RN   QAV  LRGK +NV S+  E I  N +
Sbjct: 386 HLTDNSLYGNNSSIFITEGESASASILASRNPLTQAVFSLRGKPMNVFSSKEETIYKNDE 445

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           +  L  ALG    S    ++LRY  +I+ TDADVDG HI +L++TFF +    ++EQ HL
Sbjct: 446 LFYLATALGLHKNSL---QNLRYNHIILATDADVDGMHIRNLMITFFLKTFLPVVEQNHL 502

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           F++  PLF++    ++ Y + EE K   +E   K  +  +EI+RFKGLGE+   + K   
Sbjct: 503 FILETPLFKVRYKDETFYCYSEEEKLSTIERLGKK-ESSLEITRFKGLGEISPKEFKS-F 560

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           +  + R L  V       +       +   MG    ER  FI E    + ++
Sbjct: 561 IGPDMR-LTPVSPP----NADTLDALLQFYMGKNTKERKHFIIEN--LVTNL 605


>gi|327312914|ref|YP_004328351.1| DNA topoisomerase IV subunit B [Prevotella denticola F0289]
 gi|326944601|gb|AEA20486.1| DNA topoisomerase IV subunit B [Prevotella denticola F0289]
          Length = 653

 Score =  366 bits (940), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 185/701 (26%), Positives = 293/701 (41%), Gaps = 102/701 (14%)

Query: 30  PDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----EKALHHLFSEVIDN 84
             S          +Y   +IR L  +E VR RPGMYIG        E  ++ L  EVIDN
Sbjct: 3   NSSTLNTPHPTPVDYTDDNIRHLSDMEHVRTRPGMYIGRLGDGKLPEDGIYVLLKEVIDN 62

Query: 85  AMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144
           ++DE      + IE+ ++ N  ++V D GRGIP            L   ++ L+ GGK+D
Sbjct: 63  SIDEFKMNAGDRIEIDVEDNLRVSVRDYGRGIPQGK---------LVEAVSVLNTGGKYD 113

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  ++ S GL+GVG+  VNALS    V   R   +    F +G      +K +K  ++ G
Sbjct: 114 SKAFKKSVGLNGVGVKAVNALSSHFEVKSFRDGKVRELSFEKG--NIRSDKTKKSADENG 171

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I F PD  +F +   F    + +M ++  YL+  +   ++  +               
Sbjct: 172 TYIYFEPDNTLFKNY-SFHDDIVEEMLRNYTYLNTGLTIMYNGRRI-------------L 217

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
              GLK  L   +    L       G+          +E A     +   E  S+ N   
Sbjct: 218 SRHGLKDLLTDNMTVDPLYPIVHMKGE---------DIEIAFTHTNQYGEEYYSFVNGQH 268

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           T +GGTH++  +  + R IK++               D+    V  ++V + EP F  QT
Sbjct: 269 TTQGGTHQTAFKEHIARTIKEFFG--------KYEYGDIRNGLVAAIAVNVEEPVFESQT 320

Query: 384 KTKLVSLDAQR-------TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           K KL S             V + ++   D+YL  +  + T +LE  I+ +E   +     
Sbjct: 321 KIKLGSTQMAPDGESINKYVGDFIKTNVDNYLHIHKEDFTDILENKIKETERERKAMAGV 380

Query: 437 EVNRKTAIRKLR--------LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
               +   +K                D   N    + +FI EGDSA GS  ++RN + QA
Sbjct: 381 TKLARERAKKANLHNRKLRDCRVHYCDVKNNRKEESSIFITEGDSASGSITKSRNVNTQA 440

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           V  LRGK LN      + +  N++   L  AL          + LRY KVI+ TDADVDG
Sbjct: 441 VFSLRGKPLNSFGLTKKVVYENEEFNLLQAALDIEDGL----DSLRYNKVIVATDADVDG 496

Query: 549 AHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT------QGTKSV------------- 589
            HI  L++TFF Q   +LI++ H++++  PLFR+       +  + +             
Sbjct: 497 MHIRLLIITFFLQFFPELIKKGHVYVLQTPLFRVRNRRTKIKDKQVIADADAHRAKNEKK 556

Query: 590 ------YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRV 643
                 Y + EE +   + +         EI+RFKGLGE+   +     +  + R L +V
Sbjct: 557 NDFITRYCYSEEERLAAISDLGPE----PEITRFKGLGEISPDEFAH-FIGPDMR-LEQV 610

Query: 644 EINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
            ++K+          +   MG    ER  FI +     +D+
Sbjct: 611 TLHKN----DQVSKLLEYYMGKNTMERQNFIIDNLVIEEDL 647


>gi|269860440|ref|XP_002649941.1| DNA topoisomerase II [Enterocytozoon bieneusi H348]
 gi|220066628|gb|EED44103.1| DNA topoisomerase II [Enterocytozoon bieneusi H348]
          Length = 1159

 Score =  366 bits (940), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 137/681 (20%), Positives = 250/681 (36%), Gaps = 76/681 (11%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-----------------------KA 73
            ++  + Y           E + +RP  YIG  +                          
Sbjct: 2   PKTIEEIYQKK-----TPKEHILLRPDTYIGSVEIDTQSAFVWDNMQEKIVLKNVKFAPG 56

Query: 74  LHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
           L+ +F E++ NA D          I+V ++    +++ ++G GIP+E H K       E+
Sbjct: 57  LYKIFDEILVNAADNKQRDPRMTYIKVYINE-MSVSIENDGNGIPIEIHQK-EQVYVPEL 114

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
           I   L     ++++  +++GG +G G  + N  S    V    +   +SQ F   + +  
Sbjct: 115 IFGHLLTSSNYNDNEKKVTGGRNGYGAKLCNIFSVHFEVETVSKGRKYSQVFKNNMEIIG 174

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGD--KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
                    K  T+ITF PD K FG         +   K            +   +  K 
Sbjct: 175 KPTISAYSGKDYTKITFVPDFKRFGMSLFDSDIISIFYKRVYDMCATVKNTEIYLNDKKL 234

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
           +        +        L T                               E A A  +
Sbjct: 235 MINNLKEYAQLYLSHDVKLVTKK------------------------INDRWEIACASTD 270

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
           E     S+ N+I T +GGTH + +   L   +     + +  + + +   ++  +    +
Sbjct: 271 EQFMQVSFVNSICTSKGGTHVNHVLDQLMDPLIS--AVKKRDKTLVLKPLNVKNNLFLFI 328

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           +  I  P F  QTK  L    +    +    D     +++N    T +++ +I  S+ + 
Sbjct: 329 NALIENPIFDSQTKENLTLKSSAFGSKCQPIDDIIKDIIKN----TDIIDKIITFSKIKQ 384

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCS-QNIAHGTELFIVEGDSAGGSAKQARN---RSN 486
               ++    KT         + A+ +    +    L + EGDSA   A    +   R  
Sbjct: 385 AVLLKKTDGVKTTKIVGIPKLEDANFAGTKRSSECTLILTEGDSAKTLAVAGLSVVGRDK 444

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
             V PLRGK+LNV  A +++I +N +I  + + LG +  ++      LRY  ++IMTD D
Sbjct: 445 YGVFPLRGKLLNVREASNKQIMDNAEISAIKKILGLQHGKTYTDTTSLRYGHIMIMTDQD 504

Query: 546 VDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
            DG+HI  L++ F       L++    L     P+ R T+  +          +K  ++ 
Sbjct: 505 FDGSHIKGLIINFLDYFFPSLLKILGFLQEFITPIVRATKKKEKYDFFTIPEYEKFKQQI 564

Query: 605 KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMG 664
           ++       I  +KGLG       K+   +        + +   L   +    + NK   
Sbjct: 565 EQIKDSGWVIKYYKGLGTSTTDDAKQYFNNLKLHVKTFIPVE--LEDRELIDLAFNK--- 619

Query: 665 TKADERFKFI--QERASFIDD 683
            KAD+R ++I   E  +F+D 
Sbjct: 620 KKADDRKEWIGRFEPGTFLDQ 640


>gi|282858665|ref|ZP_06267823.1| DNA topoisomerase IV subunit B [Prevotella bivia JCVIHMP010]
 gi|282588583|gb|EFB93730.1| DNA topoisomerase IV subunit B [Prevotella bivia JCVIHMP010]
          Length = 648

 Score =  366 bits (939), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 191/697 (27%), Positives = 301/697 (43%), Gaps = 103/697 (14%)

Query: 35  FANQSASD-NYDASSIRILEGLEPVRMRPGMYIGGTD-----EKALHHLFSEVIDNAMDE 88
            A ++ S   Y   +IR L  +E VR RPGMYIG        E  ++ L  EVIDN++DE
Sbjct: 1   MAEEAKSKVQYTDDNIRHLSDMEHVRTRPGMYIGRLGDGKLPEDGIYVLLKEVIDNSIDE 60

Query: 89  VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148
                 N IE+ ++ N  ++V D GRGIP            L   ++ L+ GGK+D+  +
Sbjct: 61  FKMEAGNRIEIDIEENLRVSVRDYGRGIPQGK---------LVEAVSMLNTGGKYDSKAF 111

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           + S GL+GVG+  VNALS +  V   R+  +    F +G       K  K  ++ GT I 
Sbjct: 112 KKSVGLNGVGVKAVNALSAKFEVKSFREGKVRHLWFEKGELKDD--KTSKSTDENGTFIY 169

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F PD  +F +   F    +  M ++  YL+  +   ++  +                  G
Sbjct: 170 FEPDNTLFKNY-QFHDDIVETMLRNYTYLNTGLTIMYNGRRI-------------LSRHG 215

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           LK  L   +    L       G+          +E A     +   E  S+ N   T +G
Sbjct: 216 LKDLLTDNMTVDPLYPIVHMKGE---------DIEIAFTHTNQYGEEYYSFVNGQHTTQG 266

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           GTH++  +  + + IK+Y               D+    V  ++V + EP F  QTK KL
Sbjct: 267 GTHQTAFKEHIAKTIKEYFG--------KYEYGDIRNGLVAAIAVNVEEPIFESQTKVKL 318

Query: 388 VSLDAQR-------TVENALRDPFDHYLVQNPIEATKLLEWVIER-SEERLRRRKQREVN 439
            S             V + ++   D+YL  +  + + +LE  I+    ER       ++ 
Sbjct: 319 GSTQMAPDGDTINKYVGDFIKLNVDNYLHIHKEDCSDILENKIKETERERKAMAGVTKLA 378

Query: 440 RKTAIRKLRLPGKLADCSQNIAH-------GTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           R+ A +      KL DC  + +         + +FI EGDSA GS  ++R+ + QAV  L
Sbjct: 379 RERAKKANLHNRKLRDCRIHYSDVKNDRKEESAIFITEGDSASGSITKSRDVNTQAVFSL 438

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIA 552
           RGK LN      + +  N++   L  AL          + LRY KVI+ TDADVDG HI 
Sbjct: 439 RGKPLNSFGLTKKVVYENEEFNLLQAALDIEEGL----DSLRYNKVIVATDADVDGMHIR 494

Query: 553 SLLLTFFYQEMYDLIEQKHLFLISPPLFRIT------QGTKSV----------------- 589
            L++TFF Q   +LI++ H++++  PLFR+       +  K +                 
Sbjct: 495 LLIITFFLQFFPELIKKGHVYVLQTPLFRVRNRRTKIKNKKVIAEADKNKAKGEKKSDFI 554

Query: 590 --YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINK 647
             Y + EE + + +           EI+RFKGLGE+   +     +  + R L +V ++K
Sbjct: 555 TRYCYSEEERLEAISALGPE----PEITRFKGLGEISPDEFAH-FIGPDMR-LEQVTLHK 608

Query: 648 DLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           +       Q  +   MG    ER  FI +     +D+
Sbjct: 609 N----DQVQKLLEYYMGKNTMERQNFIIDNLVVEEDI 641


>gi|325268376|ref|ZP_08135008.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella
           multiformis DSM 16608]
 gi|324989230|gb|EGC21181.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella
           multiformis DSM 16608]
          Length = 653

 Score =  366 bits (939), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 183/694 (26%), Positives = 290/694 (41%), Gaps = 102/694 (14%)

Query: 30  PDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----EKALHHLFSEVIDN 84
           P S      ++   Y   +IR L  +E VR RPGMYIG        E  ++ L  EVIDN
Sbjct: 3   PSSSTITPDASPVEYTDDNIRHLSDMEHVRTRPGMYIGRLGDGKLPEDGIYVLLKEVIDN 62

Query: 85  AMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144
           ++DE      + IE+ ++ N  ++V D GRGIP            L   ++ L+ GGK+D
Sbjct: 63  SIDEFKMNAGDRIEIDVEDNLRVSVRDYGRGIPQGK---------LVEAVSVLNTGGKYD 113

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  ++ S GL+GVG+  VNALS    V   R   +    F  G      ++  K  ++ G
Sbjct: 114 SKAFKKSVGLNGVGVKAVNALSSHFEVKSYRDGRVRELTF--GKGNIQNDRTAKSSDESG 171

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I F PD  +F +   F    + +M ++  YL+  +   ++  +               
Sbjct: 172 TYIYFEPDNTLFKNY-SFHDDIVEEMLRNYTYLNTGLTIMYNGRRI-------------L 217

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
              GLK  L   +    L       G+          +E A     +   E  S+ N   
Sbjct: 218 SRHGLKDLLTDNMTVDPLYPIVHMKGE---------DIEIAFTHTNQYGEEYYSFVNGQH 268

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           T +GGTH++  +  + R IK++               D+    V  ++V + EP F  QT
Sbjct: 269 TTQGGTHQTAFKEHIARTIKEFFG--------KYEYGDIRNGLVAAIAVNVEEPVFESQT 320

Query: 384 KTKLVSLDAQR-------TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           K KL S             V + ++   D+YL  +  + T +LE  I+ +E   +     
Sbjct: 321 KIKLGSTQMAPDGESINKYVGDFIKTNVDNYLHIHKEDFTDILENKIKETERERKAMAGV 380

Query: 437 EVNRKTAIRKLR--------LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
               +   +K                D   N    + +FI EGDSA GS  ++R+ + QA
Sbjct: 381 TKLARERAKKANLHNRKLRDCRVHYCDVKNNRKEESSIFITEGDSASGSITKSRDVNTQA 440

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           V  LRGK LN      + +  N++   L  AL          + LRY KVI+ TDADVDG
Sbjct: 441 VFSLRGKPLNSFGLTKKVVYENEEFNLLQAALDIEDGL----DSLRYNKVIVATDADVDG 496

Query: 549 AHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT------QGTKSV------------- 589
            HI  L++TFF Q   +LI++ H++++  PLFR+       +  + +             
Sbjct: 497 MHIRLLIITFFLQFFPELIKKGHVYVLQTPLFRVRNRRTKIKDKQVIADADAHRAKNEKK 556

Query: 590 ------YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRV 643
                 Y + EE +   + +         EI+RFKGLGE+   +     +  + R L +V
Sbjct: 557 NDFITRYCYSEEERLAAISDLGPE----PEITRFKGLGEISPDEFAH-FIGPDMR-LEQV 610

Query: 644 EINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
            ++K+          +   MG    ER  FI + 
Sbjct: 611 TLHKN----DQVSKLLEYYMGKNTMERQNFIIDN 640


>gi|67538472|ref|XP_663010.1| hypothetical protein AN5406.2 [Aspergillus nidulans FGSC A4]
 gi|40743376|gb|EAA62566.1| hypothetical protein AN5406.2 [Aspergillus nidulans FGSC A4]
 gi|259485149|tpe|CBF81963.1| TPA: DNA topoisomerase 2 (EC 5.99.1.3)
           [Source:UniProtKB/TrEMBL;Acc:O59864] [Aspergillus
           nidulans FGSC A4]
          Length = 1709

 Score =  366 bits (939), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 144/727 (19%), Positives = 269/727 (37%), Gaps = 77/727 (10%)

Query: 1   MTDDSIDL-----FSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDAS-------S 48
           M+D    L      S  PP+   ++   KKSG  P +         D+ DAS        
Sbjct: 61  MSDPDDPLDVDSVLSQTPPKKVPAA-ATKKSGFKPLADVENESIPIDDVDASEEVKASSK 119

Query: 49  IRILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDNA 85
            + L   E + +RP  YIG  +                          L+ +F E++ NA
Sbjct: 120 YQKLNLREHITIRPDSYIGSVERTTQEMWVYNSEIDGMEFREVSYVPGLYKIFDEIVVNA 179

Query: 86  MDEVIAG-YANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143
            D        + I V+       ++V +NG+GIPVE H +       ++I   L     +
Sbjct: 180 ADNKQNDDNMDEIRVTYSRETNEISVWNNGKGIPVEMHEEH-GMYIPQLIFGNLLTSSNY 238

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ--KFSRGIPLSPLEKKEKVRN 201
           D++  +I+GG +G G  + N  S E  V              ++  +      K    + 
Sbjct: 239 DDAKEKITGGRNGFGAKLCNVFSTEFTVETQDSKQKKRYLQTWTDNMQTVGKPKITAAKG 298

Query: 202 KRGTRITFRPD-PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
              TR+TF+ D P+   D    D   L+K        +  V    +  +     +     
Sbjct: 299 SDFTRVTFKADFPRFGMDGIDDDFEALIKRRVYDLAGTTGVTVKLNGTRLPVRNFKK--- 355

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCN 320
              Y     K   + + ++ S     I         +     E   A  + + +  S+ N
Sbjct: 356 ---YMEMYTKAIRRERGDDDSKSDPIITC-------SPHPYWEIGFAVSDGSFKQVSFVN 405

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFA 380
           +I T  GGTH + +   +   + +  +  +      +    +       ++  I  P F+
Sbjct: 406 SIATTSGGTHVNYIADQIAGKLSESLKKNKKGTGSILKPAQIRNYCFLFVNAKIVNPAFS 465

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
            QTK +L +   Q   +  L + F   +       + +L+ +   ++ +     ++    
Sbjct: 466 SQTKEQLTTKQTQFGSKPILDESFLKKVAN-----SGVLDSLKRFADHKADLMLKKSDGG 520

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKIL 497
           + +                  +   L + EG+SA G A   R         V PLRGK+L
Sbjct: 521 RRSRMNNPKLTDANRAGTKDGYKCTLILTEGESAKGLAMAGRAVVGADLFGVYPLRGKML 580

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLL 556
           NV  A  ++I  N++I  +   +G + + +Y +   LRY  ++IMTD D DG+HI  LL+
Sbjct: 581 NVRDASFDQISKNEEIQSIKNFMGLQHKKEYTDTKGLRYGHLMIMTDQDHDGSHIKGLLI 640

Query: 557 TFFYQEMYDLIEQK-HLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKG 610
            F   +   L++    L     P+ ++ +G     TK       +      E+     + 
Sbjct: 641 NFLEAQFPSLLKIPEFLIEFITPIVKVWKGDIKDPTKQHSFFTIQEYNAWKEKHG--HER 698

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADER 670
             E   +KGLG     + +E   D ++       +    +  +  + + +K    K +ER
Sbjct: 699 GWEHKYYKGLGTSSTEEAQEYFRDLDRHLKEFHVMQDKEH--ELIELAFSK---KKVEER 753

Query: 671 FKFIQER 677
            +++++ 
Sbjct: 754 KEWLRQY 760


>gi|55773630|dbj|BAA28664.2| typeII DNA topoisomerase [Emericella nidulans]
          Length = 1709

 Score =  366 bits (938), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 144/727 (19%), Positives = 269/727 (37%), Gaps = 77/727 (10%)

Query: 1   MTDDSIDL-----FSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDAS-------S 48
           M+D    L      S  PP+   ++   KKSG  P +         D+ DAS        
Sbjct: 61  MSDPDDPLDVDSVLSQTPPKKVPAA-ATKKSGFKPLADVENESIPIDDVDASEEVKASSK 119

Query: 49  IRILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVIDNA 85
            + L   E + +RP  YIG  +                          L+ +F E++ NA
Sbjct: 120 YQKLNLREHITIRPDSYIGSVERTTQEMWVYNSEIDGMEFREVSYVPGLYKIFDEIVVNA 179

Query: 86  MDEVIAG-YANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143
            D        + I V+       ++V +NG+GIPVE H +       ++I   L     +
Sbjct: 180 ADNKQNDDNMDEIRVTYSRETNEISVWNNGKGIPVEMHEEH-GMYIPQLIFGNLLTSSNY 238

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ--KFSRGIPLSPLEKKEKVRN 201
           D++  +I+GG +G G  + N  S E  V              ++  +      K    + 
Sbjct: 239 DDAKEKITGGRNGFGAKLCNVFSTEFTVETQDSKQKKRYLQTWTDNMQTVGKPKITAAKG 298

Query: 202 KRGTRITFRPD-PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
              TR+TF+ D P+   D    D   L+K        +  V    +  +     +     
Sbjct: 299 SDFTRVTFKADFPRFGMDGIDDDFEALIKRRVYDLAGTTGVTVKLNGTRLPVRNFKK--- 355

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCN 320
              Y     K   + + ++ S     I         +     E   A  + + +  S+ N
Sbjct: 356 ---YMEMYTKAIRRERGDDDSKSDPIITC-------SPHPYWEIGFAVSDGSFKQVSFVN 405

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFA 380
           +I T  GGTH + +   +   + +  +  +      +    +       ++  I  P F+
Sbjct: 406 SIATTSGGTHVNYIADQIAGKLSESLKKNKKGTGSILKPAQIRNYCFLFVNAKIVNPAFS 465

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
            QTK +L +   Q   +  L + F   +       + +L+ +   ++ +     ++    
Sbjct: 466 SQTKEQLTTKQTQFGSKPILDESFLKKVAN-----SGVLDSLKRFADHKADLMLKKSDGG 520

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKIL 497
           + +                  +   L + EG+SA G A   R         V PLRGK+L
Sbjct: 521 RRSRMNNPKLTDANRAGTKDGYKCTLILTEGESAKGLAMAGRAVVGADLFGVYPLRGKML 580

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLL 556
           NV  A  ++I  N++I  +   +G + + +Y +   LRY  ++IMTD D DG+HI  LL+
Sbjct: 581 NVRDASFDQISKNEEIQSIKNFMGLQHKKEYTDTKGLRYGHLMIMTDQDHDGSHIKGLLI 640

Query: 557 TFFYQEMYDLIEQK-HLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKG 610
            F   +   L++    L     P+ ++ +G     TK       +      E+     + 
Sbjct: 641 NFLEAQFPSLLKIPEFLIEFITPIVKVWKGDIKDPTKQHSFFTIQEYNAWKEKHG--HER 698

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADER 670
             E   +KGLG     + +E   D ++       +    +  +  + + +K    K +ER
Sbjct: 699 GWEHKYYKGLGTSSTEEAQEYFRDLDRHLKEFHVMQDKEH--ELIELAFSK---KKVEER 753

Query: 671 FKFIQER 677
            +++++ 
Sbjct: 754 KEWLRQY 760


>gi|219684880|ref|ZP_03539822.1| DNA topoisomerase II (N- region) domain protein [Borrelia garinii
           PBr]
 gi|219671825|gb|EED28880.1| DNA topoisomerase II (N- region) domain protein [Borrelia garinii
           PBr]
          Length = 599

 Score =  366 bits (938), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 196/650 (30%), Positives = 310/650 (47%), Gaps = 66/650 (10%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + NYD S I  L  LE +R+R GMYIG        +  ++ L  E+IDN++DE I GY 
Sbjct: 2   KTQNYDESKIITLSSLEHIRLRSGMYIGRLGDGSNIDDGIYILIKEIIDNSIDEFIMGYG 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           N I +    N  +T+ D GRGIP+           +E + + ++ G K+++  ++ S GL
Sbjct: 62  NEIFIK-KENNLITIRDYGRGIPLGK--------VVESV-SVINTGAKYNDDVFQFSVGL 111

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           +GVG   VNALS +  V   R    F   FS+G  L   E   +  +K GT + F  D +
Sbjct: 112 NGVGTKAVNALSSKFLVRSTRNGKSFEALFSKGNLLESREM--ESSDKDGTYVEFLADSE 169

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IFG    +    L +     A L+  +   ++              + F    GL  +L 
Sbjct: 170 IFGKY-SYSEDFLKRRFFHYACLNKGLIINYNN-------------QIFESKNGLLDFLN 215

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
           +++++  L+   ++            T+E+A +          S+ N   T++GGTH++G
Sbjct: 216 SEIKSDDLLYDIVYYSS--------KTLEFAFSHTNNYGETYFSFVNGQYTNDGGTHQTG 267

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            R    R I  +      K+  S    D+    V  LSV I++P F  QTK KL +++ +
Sbjct: 268 FREGFVRAINDF-----LKKTYSST--DIREGLVATLSVKIKDPIFESQTKNKLGNIETR 320

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
             V   ++      L ++ I A  + + V++    R      R+  R+ A +      KL
Sbjct: 321 GNVAREVQKIISEILYKDKILAKLIEKKVVDNERLRKELSSVRKEARERAKKISFKIPKL 380

Query: 454 ADCSQNIA------HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            DC  +          T +F+ EGDSA GS    R+   QA+  LRGK  N+      +I
Sbjct: 381 KDCKFHFNGSNKQSEQTMIFLTEGDSATGSMVSCRDVYTQAIFSLRGKPQNMFEKNKSEI 440

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N+++ +++ ALG         E+LRY KV+I TDAD DG HI +LLLTFF     DLI
Sbjct: 441 YKNEELYNMMVALGIE----ESIENLRYNKVVIATDADFDGFHIRNLLLTFFLTFFEDLI 496

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
              H++++  PLFR+     ++Y + EE K+K + +     KG  E++RFKGLGE+  ++
Sbjct: 497 LNGHMYILETPLFRVRNKKNTIYCYSEEEKKKAMIQL----KGGCEVTRFKGLGEISPNE 552

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
            K   +D N   L +V    DL ++K+ ++ +   MG    ER  FI E 
Sbjct: 553 FKS-FIDINSIKLTKV----DLFNIKEIKEKLGFYMGQNTPERRNFIMEN 597


>gi|71424000|ref|XP_812644.1| DNA topoisomerase II [Trypanosoma cruzi strain CL Brener]
 gi|70877452|gb|EAN90793.1| DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1476

 Score =  366 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 141/685 (20%), Positives = 238/685 (34%), Gaps = 83/685 (12%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGG-----------------------TDE 71
            AN++  + Y           E +  RP MYIG                        T  
Sbjct: 1   MANRTVEEIYQKK-----TQHEHILSRPDMYIGTIEPVTEDMWLYDEAENIMKLRKCTWT 55

Query: 72  KALHHLFSEVIDNAMDEVIAGY--ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKS 128
             L+ +F E++ NA D  +        I+V +D   G + V +NG GIPV+ H +  N  
Sbjct: 56  PGLYKIFDEILVNAADNKVRDPLGQTAIKVWIDAERGMVRVYNNGEGIPVQRHREH-NLW 114

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTV--ARQNTIFSQKFSR 186
             E+I   L     +D++  +++GG +G G  + N  S    V    +R    F  ++  
Sbjct: 115 VPEMIFGYLLTSSNYDDTEAKVTGGRNGFGAKLTNVFSTRFEVETVHSRSRKKFFMRWRN 174

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIF--GDKAGFDAARLLKMTQSKAYLSGRVKTC 244
            +  S             T +TF PD   F            + +     A         
Sbjct: 175 NMLESEEPVITPSEGPDYTVVTFYPDFAKFNLQGFGEDMVHMMRRRVYDVAGC------- 227

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
              DK +       +     F   +  Y     E ++   +              G  E 
Sbjct: 228 --TDKSLRCYLNDTKIACSSFLEYVDLYPMMGEERKAASYAR-----------VNGRWEV 274

Query: 305 AIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMI 364
            +       +  S+ N+I T  GGTH   +   +   I K  E  + K    +    +  
Sbjct: 275 CVRVSNIGFQQVSFVNSIATTRGGTHVRYITDQV---IAKVTEQAKRKSKTEVKPHMIRP 331

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
                ++  +  P F  QTK  L +   +      L            I  + ++E  +E
Sbjct: 332 HLFVFINCLVENPGFDSQTKETLNTPKNRFGSTCDLPPSMID-----CILKSSIVERAVE 386

Query: 425 RSEERLRRRKQREVNRKTAIRKLRLP--GKLADCSQNIAHGTELFIVEGDSAGGSAKQA- 481
            +  +L R    ++      + L +P      +     +H   L + EGDSA        
Sbjct: 387 MANSKLTREIASKLRNADRKQILGIPKLDDANEAGGKYSHRCTLILTEGDSAKALCTAGL 446

Query: 482 --RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKV 538
             ++R    V PLRGK LNV  A  +K+    +   + + +G   R +Y   E LRY  +
Sbjct: 447 AVKDRDYFGVFPLRGKPLNVRDATLKKVMACAEFQAVSKIMGLDIRQKYSGVERLRYGHL 506

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQGTKS------VYA 591
           +IM+D D DG+HI  L++   +    DLI+    L     P+ +  +  +S      +  
Sbjct: 507 MIMSDQDHDGSHIKGLIINMIHHYWPDLIKTPGFLQQFITPIVKARKKGRSDGDDRAISF 566

Query: 592 HDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651
                  +        G    EI  +KGLG   A + +E   + ++  L  V        
Sbjct: 567 FSMPDYFEWKNAIG-DGIRNYEIRYYKGLGTSGAKEGREYFENIDRHRLDFVH-----ED 620

Query: 652 LKDTQDSINKLMGTKADERFKFIQE 676
             D    +      K +ER  +I +
Sbjct: 621 ATDDARIVMAFAKDKVEERKHWITQ 645


>gi|224531691|ref|ZP_03672323.1| DNA topoisomerase II (N- region) domain protein [Borrelia
           valaisiana VS116]
 gi|224511156|gb|EEF81562.1| DNA topoisomerase II (N- region) domain protein [Borrelia
           valaisiana VS116]
          Length = 599

 Score =  366 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 195/650 (30%), Positives = 308/650 (47%), Gaps = 66/650 (10%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + NYD S I  L  LE +R+R GMYIG        +  ++ L  E+IDN++DE I GY 
Sbjct: 2   KTQNYDESKIITLSSLEHIRLRSGMYIGRLGDGSNIDDGIYVLIKEIIDNSIDEFIMGYG 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           N I +    N  + + D GRGIP+           +E + + ++ G K+++  ++ S GL
Sbjct: 62  NEIFIR-KENNLIAIRDYGRGIPLGK--------VVESV-SVINTGAKYNDDVFQFSVGL 111

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           +GVG   VNALS +  V   R    F   FS+G  L   E   +  +K GT + F  D +
Sbjct: 112 NGVGTKAVNALSSKFLVRSTRNGKSFEALFSKGNLLESKEI--ESSDKDGTYVEFLADSE 169

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IFG    +    L +       L+  +   ++              + F    GL  +L 
Sbjct: 170 IFGKY-SYSEDFLKRRFFHYVCLNKGLIINYNN-------------QIFESKNGLLDFLN 215

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
           +++++  L+   ++            T+E+A +          S+ N   T++GGTH++G
Sbjct: 216 SEIKSDDLLYDIVYYSS--------KTLEFAFSHTNNYGETYFSFVNGQYTNDGGTHQTG 267

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            R    R I  +      K+  S    D+    V  LSV I++P F  QTK KL +++ +
Sbjct: 268 FREGFVRAINDF-----LKKTYSST--DIREGLVATLSVKIKDPIFESQTKNKLGNIETR 320

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
             V   ++      L ++ I A  + + V++    R      R+  R+ A +      KL
Sbjct: 321 GNVAKEVQKIISEILYKDKILAKLIEKKVVDNERLRKELSSVRKEARERAKKISFKIPKL 380

Query: 454 ADCSQNIAHGTE------LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            DC  +    +E      +F+ EGDSA GS    R+   QA+  LRGK  N+      +I
Sbjct: 381 KDCKFHFNGSSEQSEQTMIFLTEGDSATGSMVSCRDVYTQAIFSLRGKPQNMFEKNKSEI 440

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N+++ +++ ALG         E+LRY KV+I TDAD DG HI +LLLTFF     DLI
Sbjct: 441 YKNEELYNMMVALGIE----ESIENLRYNKVVIATDADFDGFHIRNLLLTFFLTFFEDLI 496

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
              H++++  PLFR+     ++Y + EE KQK + E     KG  E++RFKGLGE+  ++
Sbjct: 497 LNGHMYILETPLFRVRNKKNTIYCYSEEEKQKAILEL----KGGCEVTRFKGLGEISPNE 552

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
            K   +D     L +V    DL ++K+ ++ +   MG    ER  FI E 
Sbjct: 553 FKG-FIDIKSIKLTKV----DLFNIKEIKEKLRFYMGQNTPERRNFIMEN 597


>gi|51598299|ref|YP_072487.1| DNA topoisomerase IV subunit B [Borrelia garinii PBi]
 gi|51572870|gb|AAU06895.1| DNA topoisomerase IV [Borrelia garinii PBi]
          Length = 599

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 195/650 (30%), Positives = 309/650 (47%), Gaps = 66/650 (10%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + NYD S I  L  LE +R+R GMYIG        +  ++ L  E+IDN++DE I GY 
Sbjct: 2   KTQNYDESKIITLSSLEHIRLRSGMYIGRLGDGSNIDDGIYILIKEIIDNSIDEFIMGYG 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           N I +    N  + + D GRGIP+           +E + + ++ G K+++  ++ S GL
Sbjct: 62  NEIFIK-KENNLIAIRDYGRGIPLGK--------VVESV-SVINTGAKYNDDVFQFSVGL 111

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           +GVG   VNALS +  V   R    F   FS+G  L   E   +  +K GT + F  D +
Sbjct: 112 NGVGTKAVNALSSKFLVRSTRNGKSFEALFSKGNLLESREM--ESSDKDGTYVEFLADSE 169

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IFG    +    L +     A L+  +   ++              + F    GL  +L 
Sbjct: 170 IFGKY-SYSEDFLKRRFFHYACLNKGLIINYNN-------------QIFESKNGLLDFLN 215

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
           +++++  L+   ++            T+E+A +          S+ N   T++GGTH++G
Sbjct: 216 SEIKSDDLLYDIVYYSS--------KTLEFAFSHTNNYGETYFSFVNGQYTNDGGTHQTG 267

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            R    R I  +      K+  S    D+    V  LSV I++P F  QTK KL +++ +
Sbjct: 268 FREGFVRAINDF-----LKKTYSST--DIREGLVATLSVKIKDPIFESQTKNKLGNIETR 320

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
             V   ++      L ++ I A  + + V++    R      R+  R+ A +      KL
Sbjct: 321 GNVAREVQKIISEILYKDKILAKLIEKKVVDNERLRKELSSVRKEARERAKKISFKIPKL 380

Query: 454 ADCSQNIAH------GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            DC  +          T +F+ EGDSA GS    R+   QA+  LRGK  N+      +I
Sbjct: 381 KDCKFHFNDSSKQSEQTMIFLTEGDSATGSMVSCRDVYTQAIFSLRGKPQNMFEKNKSEI 440

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N+++ +++ ALG         E+LRY KV+I TDAD DG HI +LLLTFF     DLI
Sbjct: 441 YKNEELYNMMVALGIE----ESIENLRYNKVVIATDADFDGFHIRNLLLTFFLTFFEDLI 496

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
              H++++  PLFR+     ++Y + EE K+K + +     KG  E++RFKGLGE+  ++
Sbjct: 497 LNGHMYILETPLFRVRNKKITIYCYSEEEKKKAMIQL----KGGYEVTRFKGLGEISPNE 552

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
            K   +D N   L +V    DL ++K+ ++ +   MG    ER  FI E 
Sbjct: 553 FKS-FIDINNIKLTKV----DLFNIKEIKEKLGFYMGQNTPERRNFIMEN 597


>gi|74025306|ref|XP_829219.1| DNA topoisomerase II [Trypanosoma brucei TREU927]
 gi|70834605|gb|EAN80107.1| DNA topoisomerase II, putative [Trypanosoma brucei]
          Length = 1424

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 140/685 (20%), Positives = 244/685 (35%), Gaps = 83/685 (12%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGG-----------------------TDE 71
            + ++  + Y           E +  RP MYIG                        T  
Sbjct: 1   MSGRTVEEIYQKK-----TQHEHILARPDMYIGTIEPVTEDVWVYDEADNVMKLRKCTWT 55

Query: 72  KALHHLFSEVIDNAMDEVIAG-YA-NLIEVSLDG-NGFLTVVDNGRGIPVENHPKFPNKS 128
             L+ +F E++ NA D  +   +    I+V +D   G + V +NG GIPV+ H +  +  
Sbjct: 56  PGLYKIFDEILVNAADNKVRDPHGQTTIKVWVDAARGLVRVYNNGEGIPVQRHREH-DLW 114

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTV--ARQNTIFSQKFSR 186
             E+I   L     +D++  +++GG +G G  + N  S    V    +R    F  ++  
Sbjct: 115 VPEMIFGHLLTSSNYDDTEAKVTGGRNGFGAKLTNVFSTRFEVETVHSRSRKKFFMRWRN 174

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFG--DKAGFDAARLLKMTQSKAYLSGRVKTC 244
            +  +             T +TF PD + F            + +     A  + +   C
Sbjct: 175 NMLENEEAVITPCDGPDYTVVTFYPDFEKFNLEGFTEDMVLIMQRRVYDIAGCTDKSLCC 234

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
           +  D  IA +          FP  +  Y     E +    S                 E 
Sbjct: 235 YLNDTRIACRS---------FPEYVDLYPTMGEERKPSSYSR-----------VNDRWEV 274

Query: 305 AIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMI 364
            +       +  S+ N+I T  GGTH   ++  + + I K  +    K    +    +  
Sbjct: 275 CVRVSNVGFQQVSFVNSIATTRGGTH---VKYIVDQIIAKVTDQAMRKSKTEVKPHMIRP 331

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
                ++  I  P F  QTK  L +  A+      L            +  + ++E  +E
Sbjct: 332 HLFIFVNSLIENPSFDSQTKETLNTPKARFGSTCDLPASLID-----CVLKSSIVERAVE 386

Query: 425 RSEERLRRRKQREVNRKTAIRKLRLP--GKLADCSQNIAHGTELFIVEGDSAGGSAKQA- 481
            +  RL R    ++      + L +P      +     +    L + EGDSA        
Sbjct: 387 MANSRLNREMAMKMRNTNRKQILGIPKLDDANEAGGKYSQRCTLILTEGDSAKALCTAGL 446

Query: 482 --RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKV 538
              NR    V PLRGK LNV  A  +K+    +   + + +G     +Y   + LRY  +
Sbjct: 447 AVENRDYFGVFPLRGKPLNVRDASVKKVMGCAEFQAVSKIMGLDLSQKYTSTEGLRYGHL 506

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQGTK------SVYA 591
           +IM+D D DG+HI  L++   +    DL++    L     P+ +  +  +      ++  
Sbjct: 507 MIMSDQDHDGSHIKGLIINMIHNYWPDLLKVPGFLQQFITPIVKARKKGRGNNDEGTISF 566

Query: 592 HDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651
                  +        G    E+  +KGLG   A + +E   + ++  L  V        
Sbjct: 567 FSMPDYFEWKNAVG-EGIKNYELRYYKGLGTSGAKEGREYFENIDRHRLNFV-----YED 620

Query: 652 LKDTQDSINKLMGTKADERFKFIQE 676
            KD  D +      K DER ++I E
Sbjct: 621 RKDDDDIVMAFAKDKVDERKRWITE 645


>gi|325859713|ref|ZP_08172843.1| DNA topoisomerase IV subunit B [Prevotella denticola CRIS 18C-A]
 gi|325482639|gb|EGC85642.1| DNA topoisomerase IV subunit B [Prevotella denticola CRIS 18C-A]
          Length = 653

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 184/701 (26%), Positives = 293/701 (41%), Gaps = 102/701 (14%)

Query: 30  PDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----EKALHHLFSEVIDN 84
             S          +Y   +IR L  +E VR RPGMYIG        E  ++ L  EVIDN
Sbjct: 3   NSSTLNTPHPTPVDYTDDNIRHLSDMEHVRTRPGMYIGRLGDGKLPEDGIYVLLKEVIDN 62

Query: 85  AMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144
           ++DE      + IE+ ++ N  ++V D GRGIP            L   ++ L+ GGK+D
Sbjct: 63  SIDEFKMNAGDRIEIDVEDNLRVSVRDYGRGIPQGK---------LVEAVSVLNTGGKYD 113

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  ++ S GL+GVG+  VNALS    V   R   +    F +G      +K +K  ++ G
Sbjct: 114 SKAFKKSVGLNGVGVKAVNALSSHFEVKSFRDGKVRELSFEKG--NIRSDKTKKSADENG 171

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I F PD  +F +   F    + +M ++  YL+  +   ++  +               
Sbjct: 172 TYIYFEPDNTLFKNY-SFHDDIVEEMLRNYTYLNTGLAIMYNGRRI-------------L 217

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
              GLK  L   +    L       G+          +E A     +   E  S+ N   
Sbjct: 218 SRHGLKDLLTDNMTVDPLYPIVHMKGE---------DIEIAFTHTNQYGEEYYSFVNGQH 268

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           T +GGTH++  +  + R IK++               D+    V  ++V + EP F  QT
Sbjct: 269 TTQGGTHQTAFKEHIARTIKEFFG--------KYEYGDIRNGLVAAIAVNVEEPVFESQT 320

Query: 384 KTKLVSLDAQR-------TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           K KL S             V + ++   D+YL  +  + T +LE  I+ +E   +     
Sbjct: 321 KIKLGSTQMAPDGESINKYVGDFIKTNVDNYLHIHKEDFTDILENKIKETERERKAMAGV 380

Query: 437 EVNRKTAIRKLR--------LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
               +   +K                D   N    + +FI EGDSA GS  ++R+ + QA
Sbjct: 381 TKLARERAKKANLHNRKLRDCRVHYCDVKNNRKEESSIFITEGDSASGSITKSRDVNTQA 440

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           V  LRGK LN      + +  N++   L  AL          + LRY KVI+ TDADVDG
Sbjct: 441 VFSLRGKPLNSFGLTKKVVYENEEFNLLQAALDIEDGL----DSLRYNKVIVATDADVDG 496

Query: 549 AHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT------QGTKSV------------- 589
            HI  L++TFF Q   +LI++ H++++  PLFR+       +  + +             
Sbjct: 497 MHIRLLIITFFLQFFPELIKKGHVYVLQTPLFRVRNRRTKIKDKQVIADADAHRAKNEKK 556

Query: 590 ------YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRV 643
                 Y + EE +   + +         EI+RFKGLGE+   +     +  + R L +V
Sbjct: 557 NDFITRYCYSEEERLAAISDLGPE----PEITRFKGLGEISPDEFAH-FIGPDMR-LEQV 610

Query: 644 EINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
            ++K+          +   MG    ER  FI +     +D+
Sbjct: 611 TLHKN----DQVSKLLEYYMGKNTMERQNFIIDNLVIEEDL 647


>gi|46370596|gb|AAS90120.1| DNA topoisomerase type 2 [Tetrahymena thermophila]
          Length = 1662

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 133/668 (19%), Positives = 260/668 (38%), Gaps = 68/668 (10%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVI 82
            ++ +    LE + +RP  Y+G  +                         AL+ +F E++
Sbjct: 4   ETTYQKKTQLEHILLRPDTYVGSNEYQDEQMWVLADDGSSFENRQIKYVPALYKIFDEIL 63

Query: 83  DNAMDEVIAG-YANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140
            NA D          ++V +D  N  ++++++G+GIPV+ H ++ N    E+I   L   
Sbjct: 64  VNAADNYQRDKRMKRLDVIIDQKNNCISILNDGKGIPVQIHKEY-NIYVPELIFGHLLTS 122

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEK 198
             +++   ++ GG +G G  + N  S +  V  A       F   +++ +      +   
Sbjct: 123 SNYNDEEKKVVGGRNGFGAKLTNIFSTKFIVESADSKNKKKFQMTWTKNMSEQSEPQISS 182

Query: 199 VRNKRGTRITFRPDPKIFGDK--AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
                 T+ITF PD K F  K         + K     A + G         + I+    
Sbjct: 183 YTESDYTKITFYPDLKKFHMKELEKDIVDLMKKRVYDMAGVIGGSVKVSLNGERISISSF 242

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT 316
               + +    G +                     ++ KGT+    E   +  E   +  
Sbjct: 243 SDYCDFYLKNQGAEVIKV-----------------SDNKGTNNQRWEVIASLSEGQFQQV 285

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIRE 376
           S+ N+I T +GGTH + +   +T  + +   L + +++++I    +       ++  I  
Sbjct: 286 SFVNSICTSKGGTHVNYITDQITEKLME--TLKKKEKSLNIKQFQVKSHLWIFVNCLIEN 343

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P F  QTK  L            + + F        +  + ++  ++ ++  + + +  +
Sbjct: 344 PSFDTQTKETLTLRQQSFGSTCEVSEKFIK-----ELLKSNIINHILLQARAKEQAKMAK 398

Query: 437 EVNRKTAIRKLRLP--GKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLP 491
            ++ K   R L +P      D     A    L I EGDSA   A        R    V P
Sbjct: 399 TLSAKKQSRLLGVPKLEDANDAGTRNAESCTLIITEGDSAKALAMSGIEVVGRDKFGVFP 458

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAH 550
           L+GK+LNV  + S++I  N +I ++++ +G +  + Y     LRY  ++IM D D DG+H
Sbjct: 459 LKGKMLNVRDSTSKQITENLEIQNIIKVMGMKLNTNYDNVKSLRYGSIMIMADQDHDGSH 518

Query: 551 IASLLLTFFYQEMYDLIE-QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK 609
           I  L + F       L +    L     P+ ++ +G +S+     +  ++         +
Sbjct: 519 IKGLFINFIQNFWPSLFQMDGFLKEFITPIVKVRKGNQSISFFSIQDFKRWKSTCP--NQ 576

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669
              +I  +KGLG     + +E   + NK  +         +       + NK    +A++
Sbjct: 577 HLWKIKYYKGLGTSTDQEAQEYFGNINKHVISF--KYNGKDDEDAIDLAFNK---KRAED 631

Query: 670 RFKFIQER 677
           R K++ + 
Sbjct: 632 RKKWLVKY 639


>gi|219685298|ref|ZP_03540117.1| DNA topoisomerase II (N- region) domain protein [Borrelia garinii
           Far04]
 gi|219673071|gb|EED30091.1| DNA topoisomerase II (N- region) domain protein [Borrelia garinii
           Far04]
          Length = 599

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 196/650 (30%), Positives = 310/650 (47%), Gaps = 66/650 (10%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYA 94
            + NYD S I  L  LE +R+R GMYIG        +  ++ L  E+IDN++DE I GY 
Sbjct: 2   KTQNYDESKIITLSSLEHIRLRSGMYIGRLGDGSNIDDGIYILIKEIIDNSIDEFIMGYG 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           N I +    N  +T+ D GRGIP+           +E + + ++ G K+++  ++ S GL
Sbjct: 62  NEIFIK-KENNLITIRDYGRGIPLGK--------VVESV-SVINTGAKYNDDVFQFSVGL 111

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           +GVG   VNALS +  V   R    F   FS+G  L   E   +  +K GT + F  D +
Sbjct: 112 NGVGTKAVNALSSKFLVRSTRNGKSFEALFSKGNLLESREM--ESFDKDGTYVEFLADSE 169

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IFG    +    L +     A L+  +   ++              + F    GL  +L 
Sbjct: 170 IFGKY-SYSEDFLKRRFFHYACLNKGLIINYNN-------------QIFESKNGLLDFLN 215

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
           +++++  L+   ++            T+E+A +          S+ N   T++GGTH++G
Sbjct: 216 SEIKSDDLLYDIVYYSS--------KTLEFAFSHTNNYGETYFSFVNGQYTNDGGTHQTG 267

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            R    R I  +      K+  S    D+    V  LSV I++P F  QTK KL +++ +
Sbjct: 268 FREGFVRAINDF-----LKKTYSST--DIREGLVATLSVKIKDPIFESQTKNKLGNIETR 320

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
             V   ++      L ++ I A  + + V++    R      R+  R+ A +      KL
Sbjct: 321 GNVAREVQKIISEILYKDKILAKLIEKKVVDNERLRKELSSVRKEARERAKKISFKIPKL 380

Query: 454 ADCSQNIA------HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            DC  +          T +F+ EGDSA GS    R+   QA+  LRGK  N+      +I
Sbjct: 381 KDCKFHFNGSSKQSEQTMIFLTEGDSATGSMVSCRDVYTQAIFSLRGKPQNMFEKNKSEI 440

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N+++ +++ ALG         E+LRY KV+I TDAD DG HI +LLLTFF     DLI
Sbjct: 441 YKNEELYNMMVALGIE----ESIENLRYNKVVIATDADFDGFHIRNLLLTFFLTFFEDLI 496

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
              H++++  PLFR+     ++Y + EE K+K + +     KG  E++RFKGLGE+  ++
Sbjct: 497 LNGHMYILETPLFRVRNKKNTIYCYSEEEKKKAMIQL----KGGCEVTRFKGLGEISPNE 552

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
            K   +D N   L +V    DL ++K+ ++ +   MG    ER  FI E 
Sbjct: 553 FKS-FIDINSIKLTKV----DLFNIKEIKEKLGFYMGQNTPERRNFIMEN 597


>gi|83367166|gb|ABC17642.1| putative DNA topoisomerase IIbeta [Trypanosoma brucei]
 gi|261335184|emb|CBH18178.1| DNA topoisomerase II, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 1465

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 139/687 (20%), Positives = 243/687 (35%), Gaps = 83/687 (12%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGG-----------------------T 69
              + ++  + Y           E +  RP MYIG                        T
Sbjct: 40  STMSGRTVEEIYQKK-----TQHEHILARPDMYIGTIEPVTEDVWVYDEADNVMKLRKCT 94

Query: 70  DEKALHHLFSEVIDNAMDEVIAGY--ANLIEVSLDG-NGFLTVVDNGRGIPVENHPKFPN 126
               L+ +F E++ NA D  +        I+V +D   G + V +NG GIPV+ H +  +
Sbjct: 95  WTPGLYKIFDEILVNAADNKVRDPHGQTTIKVWVDAARGLVRVYNNGEGIPVQRHREH-D 153

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTV--ARQNTIFSQKF 184
               E+I   L     +D++  +++GG +G G  + N  S    V    +R    F  ++
Sbjct: 154 LWVPEMIFGHLLTSSNYDDTEAKVTGGRNGFGAKLTNVFSTRFEVETVHSRSRKKFFMRW 213

Query: 185 SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG--DKAGFDAARLLKMTQSKAYLSGRVK 242
              +  +             T +TF PD + F            + +     A  + +  
Sbjct: 214 RNNMLENEEAVITPCDGPDYTVVTFYPDFEKFNLEGFTEDMVLIMQRRVYDIAGCTDKSL 273

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
            C+  D  IA +          FP  +  Y     E +    S                 
Sbjct: 274 CCYLNDTRIACRS---------FPEYVDLYPTMGEERKPSSYSR-----------VNDRW 313

Query: 303 EWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDL 362
           E  +       +  S+ N+I T  GGTH   ++  + + I K  +    K    +    +
Sbjct: 314 EVCVRVSNVGFQQVSFVNSIATTRGGTH---VKYIVDQIIAKVTDQAMRKSKTEVKPHMI 370

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
                  ++  I  P F  QTK  L +  A+      L            +  + ++E  
Sbjct: 371 RPHLFIFVNSLIENPSFDSQTKETLNTPKARFGSTCDLPASLID-----CVLKSSIVERA 425

Query: 423 IERSEERLRRRKQREVNRKTAIRKLRLP--GKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
           +E +  RL R    ++      + L +P      +     +    L + EGDSA      
Sbjct: 426 VEMANSRLNREMAMKMRNTNRKQILGIPKLDDANEAGGKYSQRCTLILTEGDSAKALCTA 485

Query: 481 A---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYE 536
               +NR    V PL GK LNV     +K   N +I+ + + +G     +Y   + LRY 
Sbjct: 486 GLGVKNRDYFGVFPLAGKPLNVRDVSLKKASENSEIISICKIMGLDFNQKYTSTEGLRYG 545

Query: 537 KVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQGTK------SV 589
            ++IM+D D DG+HI  L++   +    DL++    L     P+ +  +  +      ++
Sbjct: 546 HLMIMSDQDHDGSHIKGLIINMIHNYWPDLLKVPGFLQQFITPIVKARKKGRGNSDEGTI 605

Query: 590 YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDL 649
                    K        G    E+  +KGLG   A + +E   + ++  L  V      
Sbjct: 606 SFFSMPDYFKWKNAVG-EGISDYEVKYYKGLGTSSAKEGREYFENIDRHRLNFV-----Y 659

Query: 650 NSLKDTQDSINKLMGTKADERFKFIQE 676
              KD    +      K DER +++ E
Sbjct: 660 EDRKDDDSIVLAFAKDKVDERKRWVME 686


>gi|190409077|gb|EDV12342.1| DNA topoisomerase 2 [Saccharomyces cerevisiae RM11-1a]
          Length = 1428

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 150/680 (22%), Positives = 274/680 (40%), Gaps = 60/680 (8%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE---------------------- 71
           +    SASD Y     + +  LE +  RP  YIG  +                       
Sbjct: 2   STEPVSASDKY-----QKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTI 56

Query: 72  -KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKS 128
              L  +F E++ NA D  +       I+V++      + V ++G+GIP+E H K  N  
Sbjct: 57  VPGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNK-ENIY 115

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN--TIFSQKFSR 186
             E+I   L     +D+   +++GG +G G  + N  S E  +  A  N    + QK+  
Sbjct: 116 IPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWEN 175

Query: 187 GIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
            + +    K    +     T++TF+PD   F      D   L  M +    ++G V+   
Sbjct: 176 NMSICHPPKITSYKKGPSYTKVTFKPDLTRF-GMKELDNDILGVMRRRVYDINGSVRDIN 234

Query: 246 SCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
                 + K    +     +   L+   Q          S+I T   E+        E A
Sbjct: 235 VYLNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGTAKSDIPTILYER---INNRWEVA 291

Query: 306 IAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
            A  + + +  S+ N+I T  GGTH + +       +KK +E+ + K+  S+ S  +  +
Sbjct: 292 FAVSDISFQQISFVNSIATTMGGTHVNYITDQ---IVKKISEILKKKKKKSVKSFQIKNN 348

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
               ++  I  P F  QTK +L +          +   + + +++  +       + I  
Sbjct: 349 MFIFINCLIENPAFTSQTKEQLTTRVKDFGSRCEIPLEYINKIMKTDLATR---MFEIAD 405

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---R 482
           + E    +K     +       +L       +    +   L + EGDSA   A       
Sbjct: 406 ANEENALKKSDGTRKSRITNYPKLEDANKAGT-KEGYKCTLVLTEGDSALSLAVAGLAVV 464

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIM 541
            R      PLRGK+LNV  A +++I  N +I  + + +G + R +Y +   LRY  ++IM
Sbjct: 465 GRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIM 524

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIE-QKHLFLISPPLFRI---TQGTKSVYAHDEEHK 597
           TD D DG+HI  L++ F       L++ Q  L     P+ ++        ++  ++    
Sbjct: 525 TDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDY 584

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           +K  EE  +  K   +   +KGLG  LA +++E   + ++   L++  +   N       
Sbjct: 585 EKWREE--ESHKFTWKQKYYKGLGTSLAQEVREYFSNLDRH--LKIFHSLQGNDKDYIDL 640

Query: 658 SINKLMGTKADERFKFIQER 677
           + +K    KAD+R +++++ 
Sbjct: 641 AFSK---KKADDRKEWLRQY 657


>gi|310795452|gb|EFQ30913.1| topoisomerase IV [Glomerella graminicola M1.001]
          Length = 1779

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 151/742 (20%), Positives = 273/742 (36%), Gaps = 92/742 (12%)

Query: 3   DDSIDLFSTLPPQSQGSSEKLKKSG-------------------EIPDSPAFANQSASDN 43
           DD    F + PP ++   +                         E P     + ++A+D 
Sbjct: 63  DDGASAFDSTPPSAKKLKKAPAAKKSSGNPLAEIENDSMMVDDEEEPAPGPKSKKTATDT 122

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDE-----------------------KALHHLFSE 80
           Y     + L  LE +  RP  YIG  +                          L+ +F E
Sbjct: 123 Y-----QKLTQLEHIIKRPDTYIGSVEPTEQPMWVFNKETNLMEYRKVTYVPGLYKIFDE 177

Query: 81  VIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLH 138
           ++ NA D          +++S+D   G +TV +NG+GIPVE H K       E+I   L 
Sbjct: 178 ILVNAADNKQRDATMTYMKISVDREAGEITVENNGKGIPVEIHGK-EKIYIPEMIFGHLL 236

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKK 196
            G  +D+   +  GG +G G  + N  S++  +          + Q ++  +      K 
Sbjct: 237 TGSNYDDDEKKTVGGRNGYGAKLCNVFSEQFTLECQDSNNGKRYKQIWTDNMSKCGKAKI 296

Query: 197 EKVRNKRGTRITFRPDPKIFGD--KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
              +     R+TF+PD K F          A + +     A     +K   +        
Sbjct: 297 TSSKTSDFVRVTFKPDFKRFSMTGIDDDLEALIYRRVYDMAGTVRGIKVHLN-------- 348

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEENP 313
                  +  F G  + Y +   + R            E   T      E A    +   
Sbjct: 349 ---GTHIKLAFKGYCEMYAKAIAKERGAEEGVEPKVVVEVDKTDAHPRWEIAFTVSDGTF 405

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVF 373
           +  S+ N+I T  GGTH + +   +T        L + K+  ++  + +       ++  
Sbjct: 406 QQVSFVNSIATTSGGTHVNYIADQITGS--LLKTLDKKKKGHALKQNHIRNHIFIFVNCL 463

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           +  P F  QTK ++ +  +Q   + AL + F   + +     +  ++ +I+ +E++  + 
Sbjct: 464 VNNPAFTSQTKEQMTTKVSQFGSKCALTEEFLKKIAK-----SDAIQNIIDFAEKKADKM 518

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR---NRSNQAVL 490
             +    K +                  H   L + EGDSA   A   R   +     V 
Sbjct: 519 MAKSDGNKRSRISNSKLVDANLAGTRHGHECTLILTEGDSAKSLAVAGRAILDPDRIGVF 578

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGA 549
           PLRGK+LNV  A  ++I  NQ+I ++ Q LG + +  Y +   LRY  ++IM D D DG+
Sbjct: 579 PLRGKMLNVRDASIDQITKNQEIQNIKQFLGLKHKQTYTDTKSLRYGHLMIMADQDHDGS 638

Query: 550 HIASLLLTFFYQEMYDLIEQK-HLFLISPPLFRITQG---TKS---VYAHDEEHKQKILE 602
           HI  LL+ F   +   L++          P+ ++ QG    K         +   ++  +
Sbjct: 639 HIKGLLINFLQVQYPSLLQIPDFFREFITPIVKVWQGPNPKKPLRLKSFFTQPQYEEW-K 697

Query: 603 EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKL 662
           E  +    +     +KGLG       +    + +        +  D   ++    + +K 
Sbjct: 698 EGHRSELARWHYKYYKGLGTSSNEDAQVYFTNLDDHLKEFDTMKPDE--VELFDLAFSK- 754

Query: 663 MGTKADERFKFIQE--RASFID 682
              KAD R +++      +F+D
Sbjct: 755 --KKADARKEWLGNFVPGTFLD 774


>gi|19880936|gb|AAM00578.1|AF458979_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 150/680 (22%), Positives = 273/680 (40%), Gaps = 60/680 (8%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE---------------------- 71
                SASD Y     + +  LE +  RP  YIG  +                       
Sbjct: 2   PTEPVSASDKY-----QKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTI 56

Query: 72  -KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKS 128
              L  +F E++ NA D  +       I+V++      + V ++G+GIP+E H K  N  
Sbjct: 57  VPGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNK-ENIY 115

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN--TIFSQKFSR 186
             E+I   L     +D+   +++GG +G G  + N  S E  +  A  N    + QK+  
Sbjct: 116 IPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWEN 175

Query: 187 GIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
            + +    K    +     T++TF+PD   F      D   L  M +    ++G V+   
Sbjct: 176 NMSICHPPKITSYKKGPSYTKVTFKPDLTRF-GMKELDNDILGVMRRRVYDINGSVRDIN 234

Query: 246 SCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
                 + K    +     +   L+   Q          S+I T   E+        E A
Sbjct: 235 VYLNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGTAKSDIPTILYER---INNRWEVA 291

Query: 306 IAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
            A  + + +  S+ N+I T  GGTH + +       +KK +E+ + K+  S+ S  +  +
Sbjct: 292 FAVSDISFQQISFVNSIATTMGGTHVNYITDQ---IVKKISEILKKKKKKSVKSFQIKNN 348

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
               ++  I  P F  QTK +L +          +   + + +++  +       + I  
Sbjct: 349 MFIFINCLIENPAFTSQTKEQLTTRVKDFGSRCEIPLEYINKIMKTDLATR---MFEIAD 405

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---R 482
           + E    +K     +       +L       +    +   L + EGDSA   A       
Sbjct: 406 ANEENALKKSDGTRKSRITNYPKLEDANKAGT-KEGYKCTLVLTEGDSALSLAVAGLAVV 464

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIM 541
            R      PLRGK+LNV  A +++I  N +I  + + +G + R +Y +   LRY  ++IM
Sbjct: 465 GRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIM 524

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIE-QKHLFLISPPLFRI---TQGTKSVYAHDEEHK 597
           TD D DG+HI  L++ F       L++ Q  L     P+ ++        ++  ++    
Sbjct: 525 TDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDY 584

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           +K  EE  +  K   +   +KGLG  LA +++E   + ++   L++  +   N       
Sbjct: 585 EKWREE--ESHKFTWKQKYYKGLGTSLAQEVREYFSNLDRH--LKIFHSLQGNDKDYIDL 640

Query: 658 SINKLMGTKADERFKFIQER 677
           + +K    KAD+R +++++ 
Sbjct: 641 AFSK---KKADDRKEWLRQY 657


>gi|66826863|ref|XP_646786.1| DNA topoisomerase II [Dictyostelium discoideum AX4]
 gi|74997376|sp|Q55BP5|TOP2_DICDI RecName: Full=Probable DNA topoisomerase 2; AltName: Full=DNA
           topoisomerase II
 gi|60474622|gb|EAL72559.1| DNA topoisomerase II [Dictyostelium discoideum AX4]
          Length = 1521

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 139/693 (20%), Positives = 262/693 (37%), Gaps = 79/693 (11%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-------------------- 70
            S A   +S  + Y    +     L+ + +RP  YIG T+                    
Sbjct: 94  ASSAKKGKSIEEIYQKKEL-----LDQILLRPDTYIGSTERQEEELWVWEDKRMVHRKVS 148

Query: 71  -EKALHHLFSEVIDNAMDEVIA-GYANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNK 127
               ++ +F E++ NA D     G    I+V +D   GF++V ++G GIP++ H +    
Sbjct: 149 FVPGIYKIFDEILVNAADNKQREGNMKFIKVVIDREKGFISVTNDGAGIPIQVHSEH-KI 207

Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN--TIFSQKFS 185
              E+I   L     +D+S   ++GG +G G  + N  S +  V  A      ++ Q F+
Sbjct: 208 YIPELIFGNLLTSSHYDDSEKRLTGGRNGFGAKLANIFSTKFIVECADSKSKKLYKQTFT 267

Query: 186 RGIPLSPLEKKEK---VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
             +      K        +          D     +      A L K     A  +  +K
Sbjct: 268 NNMRSKEDPKITSYQNKTDYTKITFYPELDRFGMVEFDDDLVALLSKRVYDIAGCNPTLK 327

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
              + ++     +       F                      E       +K + R  +
Sbjct: 328 VSLNDEELGIRSFEKYINLYF-------------------PDEENAPKVYYEKVSDRWEL 368

Query: 303 EWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDL 362
              ++  E      S+ N+I T +GGTH +     +   I++     +NK +  I    +
Sbjct: 369 AVTLSK-ESQFNQVSFVNSICTVKGGTHVTHALSNIVTAIQE-QVNKKNKGSADIKPAFI 426

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
                  ++  I  P F  QTK  L S  +      +  +P + ++ +     + ++  +
Sbjct: 427 KNHLSVFVNCLIENPHFDSQTKETLTSKISSF---GSRCEPSEKFIKRVLDSKSGIVASI 483

Query: 423 IERSEERLRRRKQREVNRKTAIRKLRLP--GKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
           +E ++ + +   +R  +      K+ +P            +    L + EGDSA   A  
Sbjct: 484 LEFAQFKDQSALKRSTSSGGKKGKVSIPKLDDANLAGGTKSEDCTLILTEGDSAKSLATA 543

Query: 481 ARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYE 536
             +   + +    PL+GK+LNV    S K+ NN +I ++V  LG +    Y    DLRY 
Sbjct: 544 GISVVGKDHYGAFPLKGKLLNVRD-QSTKVINNDEINNIVTILGLKYGKVYETLSDLRYG 602

Query: 537 KVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRI-TQGTKSVYAHDE 594
            ++IMTD D DG+HI  L++   +     L+     L     P+ ++     K +  +  
Sbjct: 603 HLMIMTDQDHDGSHIKGLIINMVHHFWPTLLRMPGFLVEFITPIVKVFKNNQKPISFYTM 662

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
               K  E          ++  +KGLG     + KE   D  +    +++   D  +  +
Sbjct: 663 PEFLKWRET----NDKGWDVKYYKGLGTSTPGEGKEYFSDLERH---KIDFEWDEGANDN 715

Query: 655 TQDSINKLMGTKADERFKFIQER--ASFIDDVG 685
            + + +K   ++AD+R K++ E    +F++  G
Sbjct: 716 IELAFSK---SRADDRKKWMAEHIEGTFLEQFG 745


>gi|19880901|gb|AAM00548.1|AF458974_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 150/680 (22%), Positives = 274/680 (40%), Gaps = 60/680 (8%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE---------------------- 71
           +    SASD Y     + +  LE +  RP  YIG  +                       
Sbjct: 2   STEPVSASDKY-----QKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTI 56

Query: 72  -KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKS 128
              L  +F E++ NA D  +       I+V++      + V ++G+GIP+E H K  N  
Sbjct: 57  VPGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNK-ENIY 115

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN--TIFSQKFSR 186
             E+I   L     +D+   +++GG +G G  + N  S E  +  A  N    + QK+  
Sbjct: 116 IPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWEN 175

Query: 187 GIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
            + +    K    +     T++TF+PD   F      D   L  M +    ++G V+   
Sbjct: 176 NMSICHPPKITSYKKGPSYTKVTFKPDLTRF-GMKELDNDILGVMRRRVYDINGSVRDIN 234

Query: 246 SCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
                 + K    +     +   L+   Q          S+I T   E+        E A
Sbjct: 235 VYLNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGTAKSDIPTILYER---INNRWEVA 291

Query: 306 IAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
            A  + + +  S+ N+I T  GGTH + +       +KK +E+ + K+  S+ S  +  +
Sbjct: 292 FAVSDISFQQISFVNSIATTMGGTHVNYITDQ---IVKKISEILKKKKKKSVKSFQIKNN 348

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
               ++  I  P F  QTK +L +          +   + + +++  +       + I  
Sbjct: 349 MFIFINCLIENPAFTSQTKEQLTTRVKDFGSRCEIPLEYINKIMKTDLATR---MFEIAD 405

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---R 482
           + E    +K     +       +L       +    +   L + EGDSA   A       
Sbjct: 406 ANEENALKKSDGTRKSRITNYPKLEDANKAGT-KEGYKCTLVLTEGDSALSLAVAGLAVV 464

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIM 541
            R      PLRGK+LNV  A +++I  N +I  + + +G + R +Y +   LRY  ++IM
Sbjct: 465 GRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIM 524

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIE-QKHLFLISPPLFRI---TQGTKSVYAHDEEHK 597
           TD D DG+HI  L++ F       L++ Q  L     P+ ++        ++  ++    
Sbjct: 525 TDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDY 584

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           +K  EE  +  K   +   +KGLG  LA +++E   + ++   L++  +   N       
Sbjct: 585 EKWREE--ESHKFTWKQKYYKGLGTSLAQEVREYFSNLDRH--LKIFHSLQGNDKDYIDL 640

Query: 658 SINKLMGTKADERFKFIQER 677
           + +K    KAD+R +++++ 
Sbjct: 641 AFSK---KKADDRKEWLRQY 657


>gi|19880943|gb|AAM00584.1|AF458980_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 150/680 (22%), Positives = 274/680 (40%), Gaps = 60/680 (8%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE---------------------- 71
           +    SASD Y     + +  LE +  RP  YIG  +                       
Sbjct: 2   STEPVSASDKY-----QKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTI 56

Query: 72  -KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKS 128
              L  +F E++ NA D  +       I+V++      + V ++G+GIP+E H K  N  
Sbjct: 57  VPGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNK-ENIY 115

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN--TIFSQKFSR 186
             E+I   L     +D+   +++GG +G G  + N  S E  +  A  N    + QK+  
Sbjct: 116 IPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWEN 175

Query: 187 GIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
            + +    K    +     T++TF+PD   F      D   L  M +    ++G V+   
Sbjct: 176 NMSICHPPKITSYKKGPSYTKVTFKPDLTRF-GMKELDNDILGVMRRRVYDINGSVRDIN 234

Query: 246 SCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
                 + K    +     +   L+   Q          S+I T   E+        E A
Sbjct: 235 VYLNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGTAKSDIPTILYER---INNRWEVA 291

Query: 306 IAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
            A  + + +  S+ N+I T  GGTH + +       +KK +E+ + K+  S+ S  +  +
Sbjct: 292 FAVSDISFQQISFVNSIATTMGGTHVNYITDQ---IVKKISEILKKKKKKSVKSFQIKNN 348

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
               ++  I  P F  QTK +L +          +   + + +++  +       + I  
Sbjct: 349 MFIFINCLIENPAFTSQTKEQLTTRVKDFGSRCEIPLEYINKIMKTDLATR---MFEIAD 405

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---R 482
           + E    +K     +       +L       +    +   L + EGDSA   A       
Sbjct: 406 ANEENALKKSDGTRKSRITNYPKLEDANKAGT-KEGYKCTLVLTEGDSALSLAVAGLAVV 464

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIM 541
            R      PLRGK+LNV  A +++I  N +I  + + +G + R +Y +   LRY  ++IM
Sbjct: 465 GRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIM 524

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIE-QKHLFLISPPLFRI---TQGTKSVYAHDEEHK 597
           TD D DG+HI  L++ F       L++ Q  L     P+ ++        ++  ++    
Sbjct: 525 TDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDY 584

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           +K  EE  +  K   +   +KGLG  LA +++E   + ++   L++  +   N       
Sbjct: 585 EKWREE--ESHKFTWKQKYYKGLGTSLAQEVREYFSNLDRH--LKIFHSLQGNDKDYIDL 640

Query: 658 SINKLMGTKADERFKFIQER 677
           + +K    KAD+R +++++ 
Sbjct: 641 AFSK---KKADDRKEWLRQY 657


>gi|255507267|ref|ZP_05382906.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis D(s)2923]
          Length = 605

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 171/652 (26%), Positives = 289/652 (44%), Gaps = 64/652 (9%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           Y  SSI  L  L+ +R+R GMYIG        E  ++ LF EV+DNA+DE + GY + I 
Sbjct: 7   YSESSIISLASLDHIRLRAGMYIGRLGDGSQAEDGIYTLFKEVVDNAIDEFVMGYGHTIH 66

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           ++ D    L++ D GRGIP+           +   ++ ++ G K+    +  S GL+GVG
Sbjct: 67  ITGDA-HELSIRDEGRGIPLGK---------VIDCVSKINTGAKYTQDVFHFSVGLNGVG 116

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +  VNALS    V   R        FS+G  +    ++   ++  GT + F PD ++F +
Sbjct: 117 LKAVNALSQHFSVRSVRNKKFLKASFSKG--ILLHTEQGATQDPDGTEVIFSPDHELFEN 174

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +   YL   +   ++ ++ ++ +  +   E        +        
Sbjct: 175 -FSFQVEFLKKKIRQYTYLHPGLTIIYNGERIVSTRGLLDLFE-------EEVQTPLLYS 226

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
             +   S++    +  +                + +  S+ N   T +GGTH    +  +
Sbjct: 227 PITFQHSDLAFLFSHTE--------------TSSEQYFSFVNGQETTDGGTHLVAFKEGI 272

Query: 339 TRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +G+ ++          +  S D+     G +++ I  P F  QTK KL + + +  +  
Sbjct: 273 VKGVNEFFG-------KNFSSQDIREGLAGCIAIKIASPIFESQTKNKLGNTNIRAELAK 325

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            +++     L +NP  A ++ E +    + R   +  ++  +    +      KL DC  
Sbjct: 326 RVKEAVLSSLKKNPSSAERIQEKIKLNEKTRKNAQFLKQELKDKQKKLHYKIPKLRDCKF 385

Query: 459 N------IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           +          + +FI EG+SA  S   +RN   QAV  LRGK +NV S+  E I  N +
Sbjct: 386 HLTDNSLYGKNSSIFITEGESASASILASRNPLTQAVFSLRGKPMNVFSSKEETIYKNDE 445

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           +  L  ALG    S    ++LRY +VI+ TDADVDG HI +L++TFF +    L+   HL
Sbjct: 446 LFYLATALGLHKDSL---QNLRYNQVILATDADVDGMHIRNLMITFFLKTFLPLVASNHL 502

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           F++  PLF++     + Y + EE K   +E   K  +  +EI+RFKGLGE+   + K   
Sbjct: 503 FILETPLFKVRHKDATFYCYSEEEKLSTIEHIGKK-ESALEITRFKGLGEISPKEFKSFI 561

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
                  L+ V +       +     +   MG    ER  FI E    + ++
Sbjct: 562 G--ADMRLIPVSLPD----TETLDTLLQFYMGKNTKERKLFIIEN--LVTNL 605


>gi|19880908|gb|AAM00554.1|AF458975_3 TOP2 [Saccharomyces cerevisiae]
 gi|19880915|gb|AAM00560.1|AF458976_3 TOP2 [Saccharomyces cerevisiae]
 gi|19880922|gb|AAM00566.1|AF458977_3 TOP2 [Saccharomyces cerevisiae]
 gi|71064112|gb|AAZ22520.1| Top2p [Saccharomyces cerevisiae]
 gi|151944446|gb|EDN62724.1| topoisomerase II [Saccharomyces cerevisiae YJM789]
          Length = 1428

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 150/680 (22%), Positives = 274/680 (40%), Gaps = 60/680 (8%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE---------------------- 71
           +    SASD Y     + +  LE +  RP  YIG  +                       
Sbjct: 2   STEPVSASDKY-----QKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTI 56

Query: 72  -KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKS 128
              L  +F E++ NA D  +       I+V++      + V ++G+GIP+E H K  N  
Sbjct: 57  VPGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNK-ENIY 115

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN--TIFSQKFSR 186
             E+I   L     +D+   +++GG +G G  + N  S E  +  A  N    + QK+  
Sbjct: 116 IPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWEN 175

Query: 187 GIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
            + +    K    +     T++TF+PD   F      D   L  M +    ++G V+   
Sbjct: 176 NMSICHPPKITSYKKGPSYTKVTFKPDLTRF-GMKELDNDILGVMRRRVYDINGSVRDIN 234

Query: 246 SCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
                 + K    +     +   L+   Q          S+I T   E+        E A
Sbjct: 235 VYLNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGTAKSDIPTILYER---INNRWEVA 291

Query: 306 IAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
            A  + + +  S+ N+I T  GGTH + +       +KK +E+ + K+  S+ S  +  +
Sbjct: 292 FAVSDISFQQISFVNSIATTMGGTHVNYITDQ---IVKKISEILKKKKKKSVKSFQIKNN 348

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
               ++  I  P F  QTK +L +          +   + + +++  +       + I  
Sbjct: 349 MFIFINCLIENPAFTSQTKEQLTTRVKDFGSRCEIPLEYINKIMKTDLATR---MFEIAD 405

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---R 482
           + E    +K     +       +L       +    +   L + EGDSA   A       
Sbjct: 406 ANEENALKKSDGTRKSRITNYPKLEDANKAGT-KEGYKCTLVLTEGDSALSLAVAGLAVV 464

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIM 541
            R      PLRGK+LNV  A +++I  N +I  + + +G + R +Y +   LRY  ++IM
Sbjct: 465 GRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIM 524

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIE-QKHLFLISPPLFRI---TQGTKSVYAHDEEHK 597
           TD D DG+HI  L++ F       L++ Q  L     P+ ++        ++  ++    
Sbjct: 525 TDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDY 584

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           +K  EE  +  K   +   +KGLG  LA +++E   + ++   L++  +   N       
Sbjct: 585 EKWREE--ESHKFTWKQKYYKGLGTSLAQEVREYFSNLDRH--LKIFHSLQGNDKDYIDL 640

Query: 658 SINKLMGTKADERFKFIQER 677
           + +K    KAD+R +++++ 
Sbjct: 641 AFSK---KKADDRKEWLRQY 657


>gi|113477398|ref|YP_723459.1| DNA gyrase subunit B [Trichodesmium erythraeum IMS101]
 gi|110168446|gb|ABG52986.1| DNA gyrase subunit B [Trichodesmium erythraeum IMS101]
          Length = 891

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 186/544 (34%), Positives = 279/544 (51%), Gaps = 26/544 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           AS+NY A  I++LEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AGY   IEV
Sbjct: 2   ASNNYGAEQIQVLEGLEAVRKRPGMYIGTTGPRGLHHLVYEVVDNSIDEALAGYCTHIEV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            L+ +G + V D+GRGIPV+ H K   KS LE ++T LHAGGKF    Y++SGGLHGVG+
Sbjct: 62  DLNKDGSVKVTDDGRGIPVDTHSK-TGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+ + VTV R      Q + RG P   L+ K     + GT + F PD +IF   
Sbjct: 121 SVVNALSEWVEVTVWRDKKTHIQGYERGQPTGDLKSKPNKEKRTGTSVQFLPDQEIFTTG 180

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             FD   ++   +  AYL+  VK   + ++    K   P+ E + + GG+K Y+      
Sbjct: 181 IQFDYNTIIGRLRELAYLNAGVKITITDNRLELVKSDEPKVESYCYEGGIKEYVTYMNRE 240

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
           +  +  E+   + EK    +  V         +  +  + N I T +GGTH  GL+  LT
Sbjct: 241 KQSLHEEVIFVRGEKNDV-QVEVALQWCIDAFSDNVLGFANNIRTIDGGTHLEGLKTVLT 299

Query: 340 RGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +   A      +    ++  +++      ++SV + EPEF GQTKTKL + + +  V+
Sbjct: 300 RTMNGIARKRNKLKDSDPNLGGENVREGLTAVISVKVPEPEFEGQTKTKLGNTEVRGIVD 359

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
           + + +    YL  NP  A  +L+  I+  +     R+ R+ V RK+ +    LPGKLADC
Sbjct: 360 SLVGEVLSEYLDFNPQVADAVLDKAIQAFKAAEAARRARDLVRRKSVLESSPLPGKLADC 419

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           S      +E+++VEGDSA G         NQ V+   G+ L+ A   +E+    +     
Sbjct: 420 STKNPEESEIYLVEGDSASG-----CFAGNQKVILADGRRLSFAEIVAEQAEGKEHFCYT 474

Query: 517 VQALGC-----RTRSQYREEDLRYEKVI------IMTDADV-----DGAHIASLLLTFFY 560
           +   G         ++  +++    K+I      I+   D      DG++  + LLT   
Sbjct: 475 INQSGNVAIERIINARITKKNASVIKIILDNNETIICTPDHLFMLRDGSYKPAALLTGND 534

Query: 561 QEMY 564
             M 
Sbjct: 535 SLMP 538



 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 89/312 (28%), Positives = 139/312 (44%), Gaps = 10/312 (3%)

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE--ERLRRRKQR 436
           +          +  ++              ++      +L     ER E   R       
Sbjct: 584 YQSANGDSCYHVGFKKLNSTKTEGLLTEKHLEFHKTNLELAYRCSERDEFLARDIIPNYN 643

Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
           +      +    L  +L      + +     +  G     SAKQ R+R  QA+LPLRGKI
Sbjct: 644 DHYNYRVVSIEPLEERLDVYDIEVPNTHNFALASGVFVHNSAKQGRDRRFQAILPLRGKI 703

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLL 555
           +N+      KI  N +I  ++ ALG   +    +   LRY KVIIMTDADVDG+HI +LL
Sbjct: 704 INIEKTDDAKIYKNNEIQSMITALGLGIKGDEFDASQLRYHKVIIMTDADVDGSHIRTLL 763

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615
           LTFFY+    L++Q ++++  PPL+++ +G    Y + +    ++++           I 
Sbjct: 764 LTFFYRYQRALVDQGYIYIACPPLYKVERGRNHYYCYSDRELNELIQNEFPDN-ANYTIQ 822

Query: 616 RFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675
           RFKGLGEM+  QL +T M+   RTL RVEI        +       LMG +   R +FI+
Sbjct: 823 RFKGLGEMMPVQLWDTTMNPETRTLKRVEIED----AAEADRIFTVLMGDRVAPRREFIE 878

Query: 676 ERASFID--DVG 685
                +   D+ 
Sbjct: 879 TYGPKLKITDLD 890


>gi|259149274|emb|CAY82516.1| Top2p [Saccharomyces cerevisiae EC1118]
          Length = 1428

 Score =  364 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 150/680 (22%), Positives = 273/680 (40%), Gaps = 60/680 (8%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE---------------------- 71
                SASD Y     + +  LE +  RP  YIG  +                       
Sbjct: 2   PTEPVSASDKY-----QKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTI 56

Query: 72  -KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKS 128
              L  +F E++ NA D  +       I+V++      + V ++G+GIP+E H K  N  
Sbjct: 57  VPGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNK-ENIY 115

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN--TIFSQKFSR 186
             E+I   L     +D+   +++GG +G G  + N  S E  +  A  N    + QK+  
Sbjct: 116 IPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWEN 175

Query: 187 GIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
            + +    K    +     T++TF+PD   F      D   L  M +    ++G V+   
Sbjct: 176 NMSICHPPKITSYKKGPSYTKVTFKPDLTRF-GMKELDNDILGVMRRRVYDINGSVRDIN 234

Query: 246 SCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
                 + K    +     +   L+   Q          S+I T   E+        E A
Sbjct: 235 VYLNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYER---INNRWEVA 291

Query: 306 IAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
            A  + + +  S+ N+I T  GGTH + +       +KK +E+ + K+  S+ S  +  +
Sbjct: 292 FAVSDISFQQISFVNSIATTMGGTHVNYITDQ---IVKKISEILKKKKKKSVKSFQIKNN 348

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
               ++  I  P F  QTK +L +          +   + + +++  +       + I  
Sbjct: 349 MFIFINCLIENPAFTSQTKEQLTTRVKDFGSRCEIPLEYINKIMKTDLATR---MFEIAD 405

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---R 482
           + E    +K     +       +L       +    +   L + EGDSA   A       
Sbjct: 406 ANEENALKKSDGTRKSRITNYPKLEDANKAGT-KEGYKCTLVLTEGDSALSLAVAGLAVV 464

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIM 541
            R      PLRGK+LNV  A +++I  N +I  + + +G + R +Y +   LRY  ++IM
Sbjct: 465 GRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIM 524

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIE-QKHLFLISPPLFRI---TQGTKSVYAHDEEHK 597
           TD D DG+HI  L++ F       L++ Q  L     P+ ++        ++  ++    
Sbjct: 525 TDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDY 584

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           +K  EE  +  K   +   +KGLG  LA +++E   + ++   L++  +   N       
Sbjct: 585 EKWREE--ESHKFTWKQKYYKGLGTSLAQEVREYFSNLDRH--LKIFHSLQGNDKDYIDL 640

Query: 658 SINKLMGTKADERFKFIQER 677
           + +K    KAD+R +++++ 
Sbjct: 641 AFSK---KKADDRKEWLRQY 657


>gi|6324241|ref|NP_014311.1| Top2p [Saccharomyces cerevisiae S288c]
 gi|1351262|sp|P06786|TOP2_YEAST RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|19880866|gb|AAM00518.1|AF458969_3 TOP2 [Saccharomyces cerevisiae]
 gi|19880880|gb|AAM00530.1|AF458971_3 TOP2 [Saccharomyces cerevisiae]
 gi|19880887|gb|AAM00536.1|AF458972_3 TOP2 [Saccharomyces cerevisiae]
 gi|887623|emb|CAA61422.1| ORF N2244 [Saccharomyces cerevisiae]
 gi|1301989|emb|CAA95964.1| TOP2 [Saccharomyces cerevisiae]
 gi|285814563|tpg|DAA10457.1| TPA: Top2p [Saccharomyces cerevisiae S288c]
          Length = 1428

 Score =  364 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 150/680 (22%), Positives = 274/680 (40%), Gaps = 60/680 (8%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE---------------------- 71
           +    SASD Y     + +  LE +  RP  YIG  +                       
Sbjct: 2   STEPVSASDKY-----QKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTI 56

Query: 72  -KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKS 128
              L  +F E++ NA D  +       I+V++      + V ++G+GIP+E H K  N  
Sbjct: 57  VPGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNK-ENIY 115

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN--TIFSQKFSR 186
             E+I   L     +D+   +++GG +G G  + N  S E  +  A  N    + QK+  
Sbjct: 116 IPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWEN 175

Query: 187 GIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
            + +    K    +     T++TF+PD   F      D   L  M +    ++G V+   
Sbjct: 176 NMSICHPPKITSYKKGPSYTKVTFKPDLTRF-GMKELDNDILGVMRRRVYDINGSVRDIN 234

Query: 246 SCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
                 + K    +     +   L+   Q          S+I T   E+        E A
Sbjct: 235 VYLNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYER---INNRWEVA 291

Query: 306 IAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
            A  + + +  S+ N+I T  GGTH + +       +KK +E+ + K+  S+ S  +  +
Sbjct: 292 FAVSDISFQQISFVNSIATTMGGTHVNYITDQ---IVKKISEILKKKKKKSVKSFQIKNN 348

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
               ++  I  P F  QTK +L +          +   + + +++  +       + I  
Sbjct: 349 MFIFINCLIENPAFTSQTKEQLTTRVKDFGSRCEIPLEYINKIMKTDLATR---MFEIAD 405

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---R 482
           + E    +K     +       +L       +    +   L + EGDSA   A       
Sbjct: 406 ANEENALKKSDGTRKSRITNYPKLEDANKAGT-KEGYKCTLVLTEGDSALSLAVAGLAVV 464

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIM 541
            R      PLRGK+LNV  A +++I  N +I  + + +G + R +Y +   LRY  ++IM
Sbjct: 465 GRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIM 524

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIE-QKHLFLISPPLFRI---TQGTKSVYAHDEEHK 597
           TD D DG+HI  L++ F       L++ Q  L     P+ ++        ++  ++    
Sbjct: 525 TDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDY 584

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           +K  EE  +  K   +   +KGLG  LA +++E   + ++   L++  +   N       
Sbjct: 585 EKWREE--ESHKFTWKQKYYKGLGTSLAQEVREYFSNLDRH--LKIFHSLQGNDKDYIDL 640

Query: 658 SINKLMGTKADERFKFIQER 677
           + +K    KAD+R +++++ 
Sbjct: 641 AFSK---KKADDRKEWLRQY 657


>gi|19880873|gb|AAM00524.1|AF458970_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score =  364 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 150/680 (22%), Positives = 273/680 (40%), Gaps = 60/680 (8%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE---------------------- 71
           +    SASD Y     + +  LE +  RP  YIG  +                       
Sbjct: 2   STEPVSASDKY-----QKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTI 56

Query: 72  -KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKS 128
              L  +F E++ NA D  +       I+V++      + V ++G+GIP+E H K  N  
Sbjct: 57  VPGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNK-ENIY 115

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN--TIFSQKFSR 186
             E+I   L     +D+   +++GG +G G  + N  S E  +  A  N    + QK+  
Sbjct: 116 IPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWEN 175

Query: 187 GIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
            + +    K    +     T++TF+PD   F      D   L  M +    ++G V+   
Sbjct: 176 NMSICHPPKITSYKKGPSYTKVTFKPDLTRF-GMKELDNDILGVMRRRVYDINGSVRDIN 234

Query: 246 SCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
                 + K    +     +   L+   Q          S+I T   E+        E A
Sbjct: 235 VYLNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGTAKSDIPTILYER---INNRWEVA 291

Query: 306 IAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
            A  + + +  S+ N+I T  GGTH + +       +KK  E+ + K+  S+ S  +  +
Sbjct: 292 FAVSDISFQQISFVNSIATTMGGTHVNYITDQ---IVKKILEILKKKKKKSVKSFQIKNN 348

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
               ++  I  P F  QTK +L +          +   + + +++  +       + I  
Sbjct: 349 MFIFINCLIENPAFTSQTKEQLTTRVKDFGSRCEIPLEYINKIMKTDLATR---MFEIAD 405

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---R 482
           + E    +K     +       +L       +    +   L + EGDSA   A       
Sbjct: 406 ANEENALKKSDGTRKSRITNYPKLEDANKAGT-KEGYKCTLVLTEGDSALSLAVAGLAVV 464

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIM 541
            R      PLRGK+LNV  A +++I  N +I  + + +G + R +Y +   LRY  ++IM
Sbjct: 465 GRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIM 524

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIE-QKHLFLISPPLFRI---TQGTKSVYAHDEEHK 597
           TD D DG+HI  L++ F       L++ Q  L     P+ ++        ++  ++    
Sbjct: 525 TDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDY 584

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           +K  EE  +  K   +   +KGLG  LA +++E   + ++   L++  +   N       
Sbjct: 585 EKWREE--ESHKFTWKQKYYKGLGTSLAQEVREYFSNLDRH--LKIFHSLQGNDKDYIDL 640

Query: 658 SINKLMGTKADERFKFIQER 677
           + +K    KAD+R +++++ 
Sbjct: 641 AFSK---KKADDRKEWLRQY 657


>gi|19880950|gb|AAM00590.1|AF458981_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score =  364 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 150/680 (22%), Positives = 274/680 (40%), Gaps = 60/680 (8%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE---------------------- 71
           +    SASD Y     + +  LE +  RP  YIG  +                       
Sbjct: 2   STEPVSASDKY-----QKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTI 56

Query: 72  -KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKS 128
              L  +F E++ NA D  +       I+V++      + V ++G+GIP+E H K  N  
Sbjct: 57  VPGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNK-ENIY 115

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN--TIFSQKFSR 186
             E+I   L     +D+   +++GG +G G  + N  S E  +  A  N    + QK+  
Sbjct: 116 IPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWEN 175

Query: 187 GIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
            + +    K    +     T++TF+PD   F      D   L  M +    ++G V+   
Sbjct: 176 NMSICHPPKITSYKKGPSYTKVTFKPDLTRF-GMKELDNDILGVMRRRVYDINGSVRDIN 234

Query: 246 SCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
                 + K    +     +   L+   Q          S+I T   E+        E A
Sbjct: 235 VYLNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYER---INNRWEVA 291

Query: 306 IAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
            A  + + +  S+ N+I T  GGTH + +       +KK +E+ + K+  S+ S  +  +
Sbjct: 292 FAVSDISFQQISFVNSIATTMGGTHVNYITDQ---IVKKISEILKKKKKKSVKSFQIKNN 348

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
               ++  I  P F  QTK +L +          +   + + +++  +       + I  
Sbjct: 349 MFIFINCLIENPAFTSQTKEQLTTRVKDFGSRCEIPLEYINKIMKTDLATR---MFEIAD 405

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---R 482
           + E    +K     +       +L       +    +   L + EGDSA   A       
Sbjct: 406 ANEENALKKSDGTRKSRITNYPKLEDANKAGT-KEGYKCTLVLTEGDSALSLAVAGLAVV 464

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIM 541
            R      PLRGK+LNV  A +++I  N +I  + + +G + R +Y +   LRY  ++IM
Sbjct: 465 GRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIM 524

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIE-QKHLFLISPPLFRI---TQGTKSVYAHDEEHK 597
           TD D DG+HI  L++ F       L++ Q  L     P+ ++        ++  ++    
Sbjct: 525 TDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDY 584

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           +K  EE  +  K   +   +KGLG  LA +++E   + ++   L++  +   N       
Sbjct: 585 EKWREE--ESHKFTWKQKYYKGLGTSLAQEVREYFSNLDRH--LKIFHSLQGNDKDYIDL 640

Query: 658 SINKLMGTKADERFKFIQER 677
           + +K    KAD+R +++++ 
Sbjct: 641 AFSK---KKADDRKEWLRQY 657


>gi|19880929|gb|AAM00572.1|AF458978_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score =  364 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 150/680 (22%), Positives = 274/680 (40%), Gaps = 60/680 (8%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE---------------------- 71
           +    SASD Y     + +  LE +  RP  YIG  +                       
Sbjct: 2   STEPVSASDKY-----QKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTI 56

Query: 72  -KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKS 128
              L  +F E++ NA D  +       I+V++      + V ++G+GIP+E H K  N  
Sbjct: 57  VPGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNK-ENIY 115

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN--TIFSQKFSR 186
             E+I   L     +D+   +++GG +G G  + N  S E  +  A  N    + QK+  
Sbjct: 116 IPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWEN 175

Query: 187 GIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
            + +    K    +     T++TF+PD   F      D   L  M +    ++G V+   
Sbjct: 176 NMSICHPPKITSYKKGPSYTKVTFKPDLTRF-GMKELDNDILGVMRRRVYDINGSVRDIN 234

Query: 246 SCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
                 + K    +     +   L+   Q          S+I T   E+        E A
Sbjct: 235 VYLNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYER---INNRWEVA 291

Query: 306 IAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
            A  + + +  S+ N+I T  GGTH + +       +KK +E+ + K+  S+ S  +  +
Sbjct: 292 FAVSDISFQQISFVNSIATTMGGTHVNYITDQ---IVKKISEILKKKKKKSVKSFQIKNN 348

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
               ++  I  P F  QTK +L +          +   + + +++  +       + I  
Sbjct: 349 MFIFINCLIENPAFTSQTKEQLTTRVKDFGSRCEIPLEYINKIMKTDLATR---MFEIAD 405

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---R 482
           + E    +K     +       +L       +    +   L + EGDSA   A       
Sbjct: 406 ANEENALKKSDGTRKSRITNYPKLEDANKAGT-KEGYKCTLVLTEGDSALSLAVAGLAVV 464

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIM 541
            R      PLRGK+LNV  A +++I  N +I  + + +G + R +Y +   LRY  ++IM
Sbjct: 465 GRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIM 524

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIE-QKHLFLISPPLFRI---TQGTKSVYAHDEEHK 597
           TD D DG+HI  L++ F       L++ Q  L     P+ ++        ++  ++    
Sbjct: 525 TDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDY 584

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           +K  EE  +  K   +   +KGLG  LA +++E   + ++   L++  +   N       
Sbjct: 585 EKWREE--ESHKFTWKQKYYKGLGTSLAQEVREYFSNLDRH--LKIFHSLQGNDKDYIDL 640

Query: 658 SINKLMGTKADERFKFIQER 677
           + +K    KAD+R +++++ 
Sbjct: 641 AFSK---KKADDRKEWLRQY 657


>gi|19880894|gb|AAM00542.1|AF458973_3 TOP2 [Saccharomyces cerevisiae]
 gi|256270263|gb|EEU05481.1| Top2p [Saccharomyces cerevisiae JAY291]
          Length = 1428

 Score =  364 bits (933), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 150/680 (22%), Positives = 274/680 (40%), Gaps = 60/680 (8%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE---------------------- 71
           +    SASD Y     + +  LE +  RP  YIG  +                       
Sbjct: 2   STEPVSASDKY-----QKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTI 56

Query: 72  -KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKS 128
              L  +F E++ NA D  +       I+V++      + V ++G+GIP+E H K  N  
Sbjct: 57  VPGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNK-ENIY 115

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN--TIFSQKFSR 186
             E+I   L     +D+   +++GG +G G  + N  S E  +  A  N    + QK+  
Sbjct: 116 IPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWEN 175

Query: 187 GIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
            + +    K    +     T++TF+PD   F      D   L  M +    ++G V+   
Sbjct: 176 NMSICHPPKITSYKKGPSYTKVTFKPDLTRF-GMKELDNDILGVMRRRVYDINGSVRDIN 234

Query: 246 SCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
                 + K    +     +   L+   Q          S+I T   E+        E A
Sbjct: 235 VYLNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGTARSDIPTILYER---INNRWEVA 291

Query: 306 IAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
            A  + + +  S+ N+I T  GGTH + +       +KK +E+ + K+  S+ S  +  +
Sbjct: 292 FAVSDISFQQISFVNSIATTMGGTHVNYITDQ---IVKKISEILKKKKKKSVKSFQIKNN 348

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
               ++  I  P F  QTK +L +          +   + + +++  +       + I  
Sbjct: 349 MFIFINCLIENPAFTSQTKEQLTTRVKDFGSRCEIPLEYINKIMKTDLATR---MFEIAD 405

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---R 482
           + E    +K     +       +L       +    +   L + EGDSA   A       
Sbjct: 406 ANEENALKKSDGTRKSRITNYPKLEDANKAGT-KEGYKCTLVLTEGDSALSLAVAGLAVV 464

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIM 541
            R      PLRGK+LNV  A +++I  N +I  + + +G + R +Y +   LRY  ++IM
Sbjct: 465 GRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIM 524

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIE-QKHLFLISPPLFRI---TQGTKSVYAHDEEHK 597
           TD D DG+HI  L++ F       L++ Q  L     P+ ++        ++  ++    
Sbjct: 525 TDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDY 584

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           +K  EE  +  K   +   +KGLG  LA +++E   + ++   L++  +   N       
Sbjct: 585 EKWREE--ESHKFTWKQKYYKGLGTSLAQEVREYFSNLDRH--LKIFHSLQGNDKDYIDL 640

Query: 658 SINKLMGTKADERFKFIQER 677
           + +K    KAD+R +++++ 
Sbjct: 641 AFSK---KKADDRKEWLRQY 657


>gi|106734233|gb|ABF82593.1| DNA topoisomerase IV subunit beta [Exiguobacterium sp. TC38]
          Length = 481

 Score =  364 bits (933), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 192/491 (39%), Positives = 279/491 (56%), Gaps = 14/491 (2%)

Query: 63  GMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122
           GMYIG T  K LHHL  E++DN++DE +AGY + I+V+++    + V DNGRGIPV+   
Sbjct: 1   GMYIGSTASKGLHHLVWEIVDNSIDEALAGYCDTIKVTIEPGNSILVEDNGRGIPVDIQE 60

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
           K   +  +E+ILT LHAGGKF    Y++SGGLHGVG SVVNALS +L V V R   ++ Q
Sbjct: 61  KM-GRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTKLEVFVKRNEKLYYQ 119

Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
            + RG+P + L+       + GT I F PD +IF +   +D   L    +  A+L+  + 
Sbjct: 120 AYHRGVPAADLDIIG-TSEETGTMIRFFPDDEIFQETLEYDYDLLATRLRELAFLNKGLT 178

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
              + D+        P    F++ GG+K+Y++    ++ ++  E       + G     V
Sbjct: 179 IEITDDR-----ADEPITRSFHYEGGIKSYVEHLNRSKEVVHEEPVYVHGNRDGI---EV 230

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IIS 359
           E A+ + +     I S+ N I T EGGTHE+G + ALTR I  YA+     +     +  
Sbjct: 231 EVALQYNDGFAANIYSFTNNIPTHEGGTHETGFKTALTRVINDYAKKFGLMKEADGTLSG 290

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           +D+      I+S+    P+F GQTKTKL + DA+   +      F+ ++++NP  A  ++
Sbjct: 291 EDVREGMTAIVSIKHPNPQFEGQTKTKLGNSDARTATDTLFSSAFEQFMMENPTSARAIV 350

Query: 420 EW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
           E  ++        +R +    RK  +    LPGKLADCS   A  +E++IVEGDSAGGSA
Sbjct: 351 EKGMMASRARMAAKRARELTRRKGVLEVSSLPGKLADCSSRDATISEIYIVEGDSAGGSA 410

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538
           K  R+R  QA+LP+RGKILNV  A  +KI  + +I  ++ ALG    S++  E  RY KV
Sbjct: 411 KSGRDRHFQAILPIRGKILNVEKARLDKILGSNEIRTIITALGTSIGSEFNIEKARYHKV 470

Query: 539 IIMTDADVDGA 549
           IIMTDADVDGA
Sbjct: 471 IIMTDADVDGA 481


>gi|39975823|ref|XP_369302.1| hypothetical protein MGG_06162 [Magnaporthe oryzae 70-15]
 gi|145011529|gb|EDJ96185.1| hypothetical protein MGG_06162 [Magnaporthe oryzae 70-15]
          Length = 1680

 Score =  364 bits (933), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 156/743 (20%), Positives = 282/743 (37%), Gaps = 85/743 (11%)

Query: 2   TDDSID-----LFSTLPPQSQGSSEKLKKSGEIP-----------------DSPAFANQS 39
           +D+  +      FS  PP S+   +                          D+     ++
Sbjct: 68  SDNEDEGMDGGTFSDTPPSSEKQKKAPAPKKSANKILTEIENDSLNLDDVADTKPQTKKT 127

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----------------------EKALHH 76
           A++ Y     + L  LE +  RP  YIG  +                          L+ 
Sbjct: 128 ATETY-----QKLTQLEHIIKRPDTYIGSVERTETKMWTFNKQTGLVENRIVAFVPGLYK 182

Query: 77  LFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           +F E++ NA D          ++V++D   G ++V +NG+GIPVE H K       E+I 
Sbjct: 183 IFDEILVNAADNSQRDKTMTYLKVTVDRESGQISVENNGKGIPVEMHEK-EKVYIPELIF 241

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSP 192
             L  G  +D+   +  GG +G G  + N  S E  +          + Q ++  +    
Sbjct: 242 GHLLTGSNYDDKELKTVGGRNGYGAKLTNIFSTEFILEAQDSSNGKRYKQTWTNNMSNCG 301

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
             K    + +   R+TF PD   FG   G D      + +    ++G + +         
Sbjct: 302 KAKITSNKTQDFVRVTFTPDYARFGMPDGIDDDLEGLLYRRVYDMAGTLDSNVKVHLNGE 361

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
           +     +K    +   +        E      +E+      +        +      +  
Sbjct: 362 QLKVNFKKYCEMYAKSIAQERDDVPEGEDSKVAEVIF----EDPKAHKRWKVGFTVSDGQ 417

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSV 372
            +  S+ N+I T +GGTH + +   +T  +   A+L + K+  S+   ++       ++ 
Sbjct: 418 FQQVSFVNSIATTQGGTHVNYIADQITAAL--LADLNKKKKGHSLKQHNIKNYIFIFVTC 475

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
            I  P F  QTK +L +  +Q   +  L +PF   +       T+ +E +I  +E++  +
Sbjct: 476 LIENPAFTSQTKEQLTTKASQFGSKCPLTEPFLKKVR-----QTEAIENIIHFAEKKADK 530

Query: 433 RKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR---NRSNQAV 489
              +    K +                  H   L + EGDSA G A   R   +     V
Sbjct: 531 MLSKSDGNKRSRISNEKLVDANLAGTKHGHECTLVLTEGDSARGLAVAGRAILDPDRIGV 590

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDG 548
            PLRGK+LNV  A  ++I  N++I ++ Q LG + +  Y +   LRY  ++IM D D DG
Sbjct: 591 FPLRGKMLNVRDASIDQILKNKEIQNIKQFLGLKHKQVYTDTKGLRYGHLMIMADQDHDG 650

Query: 549 AHIASLLLTFFYQEMYDLIEQK-HLFLISPPLFRITQG------TKSVYAHDEEHKQKIL 601
           +HI  LL+ F   +   L++          P+ ++ QG      TK     +    ++  
Sbjct: 651 SHIKGLLINFLQVQFPSLLQIPDFFQEFITPVVKVWQGSNPKKPTKLKTFFNMPQYEEW- 709

Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
           +E  KH   + +    KGLG       +    D +   L +    K    ++  + + +K
Sbjct: 710 KEAHKHEIRRWDYKYLKGLGSSSNEDAQVYFTDLDLH-LKQFHTMKPDE-IELFELAFSK 767

Query: 662 LMGTKADERFKFIQE--RASFID 682
               KAD R +++      +F+D
Sbjct: 768 ---KKADARKEWLGNFIPGTFLD 787


>gi|325104897|ref|YP_004274551.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Pedobacter saltans DSM 12145]
 gi|324973745|gb|ADY52729.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Pedobacter saltans DSM 12145]
          Length = 635

 Score =  364 bits (933), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 185/665 (27%), Positives = 305/665 (45%), Gaps = 76/665 (11%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYAN 95
           S NY   SIR L+  E +R+RPGMYIG        +  ++ L  E++DN++DE + G   
Sbjct: 5   SVNYSEDSIRSLDWKEHIRLRPGMYIGKLGDGSAYDDGIYVLLKEIVDNSIDEFVMGAGK 64

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I++S+  +  + V D GRGIP+           +   ++ ++ GGK+D+  ++ S GL+
Sbjct: 65  TIDISVY-DHKIYVRDYGRGIPLGK---------VIDCVSKINTGGKYDSKAFQKSVGLN 114

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG   VNALS    V   R       +F++G  +    +  +   + GT I F PD  I
Sbjct: 115 GVGTKAVNALSSTFTVQSYRDGKSKKAEFTKGELIGDNPEI-ETTQRNGTSIHFVPDDTI 173

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   F    +  M  +  +L+  +   ++  K  +EK             GL   L  
Sbjct: 174 FRNFR-FIPEFVENMIWNYVFLNAGLTINFNNQKYFSEK-------------GLHDLLIR 219

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             +  +     I              +E A+   ++   E  S+ N   T +GGTH+   
Sbjct: 220 NTDAETNRYPIIHL--------KGEDIEIAMTHGQQYGEEYYSFVNGQHTTQGGTHQQAF 271

Query: 335 RVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS----- 389
           R A+ + I+++ +           + D+  S V  +S+ ++EP F  QTKTKL S     
Sbjct: 272 REAVVKTIREFYK-------KEFDASDIRASIVAAISIRVQEPVFESQTKTKLGSLNVGP 324

Query: 390 --LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL 447
                +  + + ++   D YL ++P  A  LL+ +++   ER      +++  + A +  
Sbjct: 325 DGPTVRTFINDFVKKELDDYLHKHPDVADGLLKRILQSERERKDIAGIKKLANERAKKAS 384

Query: 448 RLPGKLADCSQN---------IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
               KL DC  +             T LFI EGDSA GS  +AR+ + Q V  L+GK LN
Sbjct: 385 LHNRKLRDCKWHLDDEKQPEENRKKTTLFITEGDSASGSITKARDVNTQGVFSLKGKPLN 444

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
                 + +  N++   L  AL          + LRY  ++I TDADVDG HI  LLLTF
Sbjct: 445 SFGLTKKVVYENEEFNLLQHALNIEDGL----DGLRYNNIVIATDADVDGMHIRLLLLTF 500

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           F Q   DL++  H++++  PLFR+    +++Y + +E +   + +       K EI+RFK
Sbjct: 501 FLQFFPDLVKTGHVYILQTPLFRVRNKKETIYCYSDEERVLAINKLGN----KPEITRFK 556

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           GLGE+  ++  E  +  + R L  V ++ D+      ++ +   MG    ER K I +  
Sbjct: 557 GLGEISPNEF-EGFIGEDMR-LDPVILSSDVK----IKNLLEYYMGKNTPERQKHIVQNL 610

Query: 679 SFIDD 683
               D
Sbjct: 611 RIEKD 615


>gi|325279768|ref|YP_004252310.1| DNA topoisomerase type IIA subunit B region 2 domain-containing
           protein [Odoribacter splanchnicus DSM 20712]
 gi|324311577|gb|ADY32130.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Odoribacter splanchnicus DSM 20712]
          Length = 611

 Score =  364 bits (933), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 192/655 (29%), Positives = 301/655 (45%), Gaps = 74/655 (11%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           +NY   SIR L+  E +R+RPGMYIG        +  ++ L  EV+DN++DE   G    
Sbjct: 3   ENYSEDSIRTLDWQEHIRLRPGMYIGKLGDGSAPDDGIYILVKEVVDNSIDEFAMGAGTE 62

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I + +  +  ++V D GRGIP+           L    + ++ G K+D+  ++ S GL+G
Sbjct: 63  ITIKV-EDRKVSVRDFGRGIPLGK---------LVDASSKMNTGAKYDSEAFKKSVGLNG 112

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VGI  VNALS+   +   R       ++ R   +    K E      GT++TF  D  IF
Sbjct: 113 VGIKAVNALSESFEIQSFRDGETKYVRYCRAKIVEE-RKIEPTDQPNGTQVTFFADKDIF 171

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
           G+   + A  L  M ++  +L+  +   ++  K             +Y   GL   L   
Sbjct: 172 GNYH-YIAEYLEAMVKNYVFLNTGLTIFFNDHK-------------YYSKRGLYDLLMEN 217

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
           +    L       G+          +E A+    +   E  S+ N   T +GGTH S  R
Sbjct: 218 MSGEGLYPIIHLKGE---------DIEMAMTHGRQYGEEYYSFVNGQHTTQGGTHLSAFR 268

Query: 336 VALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ-- 393
            A+ + I+ +      K+   I   D+  S +G +S+ ++EP F  QTKTKL S D +  
Sbjct: 269 EAVAKTIRDFY-----KKDFEIS--DIRTSIIGAISIKVQEPVFESQTKTKLGSKDIRPD 321

Query: 394 -----RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR 448
                  + + +    D+YL +NP  A  LL  ++E  +ER      +++ R+ A +   
Sbjct: 322 GPTVRNFIMDFVTRELDNYLHRNPDTAELLLRKIVETEKERKAMSGVQKIARERAKQVSL 381

Query: 449 LPGKLADCSQNIAHGTE------LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
              KL DC  +     E      +FI EGDSA GS  ++R+ + QAV  LRGK LN    
Sbjct: 382 HNRKLRDCRVHFNSNHERKNESSIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSYGL 441

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
             E +  N++   L  AL          E+LRY  VI+ TDADVDG HI  LLLTFF Q 
Sbjct: 442 TKEIVYKNEEFNLLQAALNIEDGL----EELRYNNVIVATDADVDGMHIRLLLLTFFLQF 497

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
             DL+   H++++  PLFR+    ++ Y + +  ++  +++       K EI+RFKGLGE
Sbjct: 498 FPDLVRAGHVYILQTPLFRVRNKKETRYCYSDAERENAIQKLG----PKPEITRFKGLGE 553

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           +  ++            L  V ++K         + ++  MG    ER  FI + 
Sbjct: 554 ISPNEFVHFIG--KDIRLEPVRLSKG----DSIDEVLSYYMGKNTPERQDFIIDN 602


>gi|320593621|gb|EFX06030.1| DNA topoisomerase 2 [Grosmannia clavigera kw1407]
          Length = 1724

 Score =  364 bits (933), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 147/699 (21%), Positives = 267/699 (38%), Gaps = 69/699 (9%)

Query: 28  EIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD----------------- 70
           E     A ++++AS+ Y     + L  LE +  RP  YIG  +                 
Sbjct: 135 EPASQAAGSSKTASEMY-----QKLTQLEHIIKRPDTYIGSVEHAEQLMWVYNKATGQME 189

Query: 71  ------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHP 122
                    L+ +F E++ NA D        ++++V++D   G ++V +NG+GI +E H 
Sbjct: 190 KRAISFVPGLYKIFDEILVNAADNKQRDPSMSMLKVTVDRAAGEISVENNGKGIAIEMHQ 249

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR--QNTIF 180
           K       E++   L  G  +D++     GG +G G  + N  S E  V          +
Sbjct: 250 K-EKVYIPELLFGHLLTGSNYDDNEKRTVGGRNGYGAKLCNVFSTEFTVECQDSASGKRY 308

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA---RLLKMTQSKAYL 237
            Q +   + +    +    ++    R+TF+PD + FG   G D      + +     A +
Sbjct: 309 KQTWHNNMSVMDKARITANKSSDFVRVTFKPDFERFGMPNGIDDDLEALMYRRIYDMAGV 368

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
              VK   + +        +    + Y     K   + + E  +            +   
Sbjct: 369 VDGVKVFLNGE-------YLKVGFKKYCDMYAKAIAKERDEEVTGEELPPAATVQFEDPK 421

Query: 298 HRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI 357
                +      +   +  S+ N+I T  GGTH + +   +   +   A+L + K+  S+
Sbjct: 422 AHKRWQIGFTVSDGTFQQVSFVNSIATTSGGTHVNYIADQICNAL--LADLNKRKKGHSL 479

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             + +       ++ FI  P F GQTK ++ +  +    +  L D F   +       T 
Sbjct: 480 KLNHIRNHIFIFVNCFIDNPAFTGQTKEQMTTKVSAFGTKCVLTDAFIKKIRS-----TD 534

Query: 418 LLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
            +  +I  +E++  +   +    + +                  H   L + EGDSA G 
Sbjct: 535 AINNIIHFAEKKADKMMSKSDGNRRSRISNDKLVDANLAGTKHGHECTLILTEGDSARGL 594

Query: 478 AKQAR---NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-L 533
           A   R   +     V PLRGK+LNV  A  ++I  N++I ++ Q LG + +  Y +   L
Sbjct: 595 AIAGRAVLDPDRIGVFPLRGKLLNVRDASIDQITKNKEIQNIKQFLGLKHKQVYTDTKSL 654

Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF-LISPPLFRITQG------T 586
           RY  ++IM D D DG+HI  LL+ F   +   L+     F     P+ ++ QG      T
Sbjct: 655 RYGHLMIMADQDHDGSHIKGLLINFLQVQFPSLLLIPEFFQEFITPVVKVWQGPNPKKPT 714

Query: 587 KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646
           KS   +     ++  +      K   E    KGLG       +    + +        + 
Sbjct: 715 KSKAFYTIPEYEEWKDAHHSEVKR-WEHKYLKGLGSSSNEDAQVYFTNLDAHLKEFETMQ 773

Query: 647 KDLNSLKDTQDSINKLMGTKADERFKFIQE--RASFIDD 683
            D    +    + +K    KAD R +++      +F+D 
Sbjct: 774 TDE--AQLFDLAFSK---KKADARKEWLGNFIPGTFLDQ 807


>gi|296418623|ref|XP_002838930.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634913|emb|CAZ83121.1| unnamed protein product [Tuber melanosporum]
          Length = 1612

 Score =  363 bits (932), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 151/710 (21%), Positives = 269/710 (37%), Gaps = 91/710 (12%)

Query: 10  STLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT 69
           S  P QS+ +  +L    +     + +++       A + + L  LE +  RP  Y+G  
Sbjct: 17  SAKPLQSKQNESELDGDDDDFGEGSGSSKEKKSF--ADAYQKLTQLEHILKRPDTYVGSV 74

Query: 70  D-----------------------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDG-N 104
           +                          L+ +F E++ NA D  I     + ++V++D   
Sbjct: 75  ERSERHMWVFDSGTTSMVWKPVTMVPGLYKIFDEILVNAADNKIRDPKMDTLKVTVDKAT 134

Query: 105 GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNA 164
             ++V +NGRGIP+E H K       E+I   L     +D+   +++GG +G G  + N 
Sbjct: 135 NTISVYNNGRGIPIEIHSK-EKVYVPELIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNI 193

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG---TRITFRPD--PKIFGDK 219
            S E  V    +NT    K +    +  + K +   N +G   T+ITF+PD       + 
Sbjct: 194 FSTEFTVETGDKNTKQKYKQTWTDNMGKMGKAKITANPKGEQFTKITFKPDLAKFHMEEM 253

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
                A + +     A     VK   + ++               F    + Y+    E 
Sbjct: 254 DDDFEALVKRRVYDMAASVKDVKVFLNGERIKLN-----------FRKYCEMYVNALHEE 302

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
                  + T +           E A A    N +  S+ N+I T  GGTH + +   L 
Sbjct: 303 AGCEEKLVITWE-----VVNDRWEVAFAASGGNFQQVSFVNSIATTSGGTHVNYIADQLC 357

Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
             ++  A   QNK   ++ +  +       ++  I  P F  QTK +L +       + A
Sbjct: 358 THLQG-ALKKQNKSGAAVKNAQMRNHFFIFVNCLIENPAFTSQTKEQLTTRAGAFGSKCA 416

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
           L D F   +++N      ++  +I+ +  +  ++ ++    + +                
Sbjct: 417 LSDTFIKNILKNTP----VISNIIDYANMKADKQLKKTDGSRRSRINNPKLIDANRAGTK 472

Query: 460 IAHGTELFIVEGDSAG----GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
            +    L + EGDSA             R    V PLRGK+LNV  A  ++I  N +I +
Sbjct: 473 DSQECVLILTEGDSARSLAVAGISAIDGRDRFGVFPLRGKLLNVRDASHDQIMKNAEIQN 532

Query: 516 LVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
           + Q LG + +  Y     LRY  ++IMTD D DG+HI  LL+ FF  +   L+       
Sbjct: 533 IKQILGLQHKKVYESRKELRYGHLMIMTDQDYDGSHIKGLLINFFETQFPSLLN------ 586

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
                          +   E    K     + + +   E   +KGLG       K    D
Sbjct: 587 --------------FFTMPEYEYWK-----ENNAEKGWEHKYYKGLGTSGERDAKLYFSD 627

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ--ERASFID 682
             +       +       +  + + +K    KADER ++++  +  +++D
Sbjct: 628 LERHVKEFHVME--AEGQRLIELAFSK---KKADERKEWLRLYKPGTYLD 672


>gi|15605394|ref|NP_220180.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis D/UW-3/CX]
 gi|76789401|ref|YP_328487.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis A/HAR-13]
 gi|237803091|ref|YP_002888285.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis B/Jali20/OT]
 gi|237805012|ref|YP_002889166.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311487|ref|ZP_05354057.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis 6276]
 gi|255317788|ref|ZP_05359034.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis 6276s]
 gi|3329111|gb|AAC68256.1| DNA Gyrase Subunit B [Chlamydia trachomatis D/UW-3/CX]
 gi|76167931|gb|AAX50939.1| DNA gyrase subunit B [Chlamydia trachomatis A/HAR-13]
 gi|231273312|emb|CAX10227.1| DNA gyrase subunit B [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274325|emb|CAX11120.1| DNA gyrase subunit B [Chlamydia trachomatis B/Jali20/OT]
 gi|296436201|gb|ADH18375.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis G/9768]
 gi|296437130|gb|ADH19300.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis G/11222]
 gi|296438061|gb|ADH20222.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis G/11074]
 gi|297140563|gb|ADH97321.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis G/9301]
 gi|297748792|gb|ADI51338.1| DNA gyrase subunit B [Chlamydia trachomatis D-EC]
 gi|297749672|gb|ADI52350.1| DNA gyrase subunit B [Chlamydia trachomatis D-LC]
          Length = 605

 Score =  363 bits (932), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 171/652 (26%), Positives = 288/652 (44%), Gaps = 64/652 (9%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           Y  SSI  L  L+ +R+R GMYIG        E  ++ LF EV+DNA+DE + GY + I 
Sbjct: 7   YSESSIISLASLDHIRLRAGMYIGRLGDGSQAEDGIYTLFKEVVDNAIDEFVMGYGHTIH 66

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           ++ D    L++ D GRGIP+           +   ++ ++ G K+    +  S GL+GVG
Sbjct: 67  ITGDA-HELSIRDEGRGIPLGK---------VIDCVSKINTGAKYTQDVFHFSVGLNGVG 116

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +  VNALS    V   R        FS+G  +    ++   ++  GT + F PD ++F +
Sbjct: 117 LKAVNALSQHFSVRSVRNKKFLKASFSKG--ILLHTEQGATQDPDGTEVVFSPDHELFEN 174

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +   YL   +   ++ ++ ++ +  +   E        +        
Sbjct: 175 -FSFQVEFLKKKIRQYTYLHPGLTIIYNGERIVSTRGLLDLFE-------EEVQTPLLYS 226

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
             +   S++    +  +                + +  S+ N   T +GGTH    +  +
Sbjct: 227 PITFQHSDLAFLFSHTE--------------TSSEQYFSFVNGQETTDGGTHLVAFKEGI 272

Query: 339 TRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +G+ ++          +  S D+     G +++ I  P F  QTK KL + + +  +  
Sbjct: 273 VKGVNEFFG-------KNFSSQDIREGLAGCIAIKIASPIFESQTKNKLGNTNIRAELAK 325

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            +++     L +NP  A ++ E +    + R   +  ++  +    +      KL DC  
Sbjct: 326 RVKEAVLSSLKKNPSSAERIQEKIKLNEKTRKNAQFLKQELKDKQKKLHYKIPKLRDCKF 385

Query: 459 N------IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           +          + +FI EG+SA  S   +RN   QAV  LRGK +NV S+  E I  N +
Sbjct: 386 HLTDNSLYGKNSSIFITEGESASASILASRNPLTQAVFSLRGKPMNVFSSKEETIYKNDE 445

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           +  L  ALG    S    ++LRY +VI+ TDADVDG HI +L++TFF +    L+   HL
Sbjct: 446 LFYLTTALGLHKDSL---QNLRYNQVILATDADVDGMHIRNLMITFFLKTFLPLVASNHL 502

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           F++  PLF++     + Y + EE K   +E   K  +  +EI+RFKGLGE+   + K   
Sbjct: 503 FILETPLFKVRHKDATFYCYSEEEKLSTIEHIGKK-ESSLEITRFKGLGEISPKEFKSFI 561

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
                  L  V +       +     +   MG    ER  FI E    + ++
Sbjct: 562 G--ADMRLTPVSLPD----TETLDTLLQFYMGKNTKERKLFIIEN--LVTNL 605


>gi|302895481|ref|XP_003046621.1| hypothetical protein NECHADRAFT_33819 [Nectria haematococca mpVI
           77-13-4]
 gi|256727548|gb|EEU40908.1| hypothetical protein NECHADRAFT_33819 [Nectria haematococca mpVI
           77-13-4]
          Length = 1677

 Score =  363 bits (931), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 157/743 (21%), Positives = 275/743 (37%), Gaps = 92/743 (12%)

Query: 1   MTDDSIDLFSTLPP----------------QSQGSSEKLKKSGEIPDSPAFAN-QSASDN 43
           M+D S    S  PP                      E      + P+ P     ++A++ 
Sbjct: 64  MSDASGS--SDSPPKSKKQKKDSTSSKSSGTPLTEPENDTMDIDTPEKPKTTKPKTATET 121

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSE 80
           Y     + L  L+ +  RP  YIG  +                          L+ +F E
Sbjct: 122 Y-----QKLTQLQHIIKRPDTYIGSVEMTQQTMWVYNKETSLMEYRPVTFVPGLYKIFDE 176

Query: 81  VIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLH 138
           ++ NA D          +++++D   G ++V +NG+GIP+  H K       E++   L 
Sbjct: 177 ILVNAADNKQRDKSMTYMKINIDRATGVISVENNGKGIPIVIHEK-EKIYIPELVFGHLL 235

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN--TIFSQKFSRGIPLSPLEKK 196
           AG  FD+   +  GG +G G  + N  S E  +          + Q ++  +      K 
Sbjct: 236 AGSNFDDDEKKTVGGRNGYGAKLCNVFSTEFQLECQDNEHGKRYRQVWTDNMQKMQKAKI 295

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAA---RLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
              +     RITF+PD K FG + G D      L +     A     VK   + +    +
Sbjct: 296 TSSKTADFVRITFKPDYKRFGMEDGIDDDLERLLYRRVYDMAGTVRGVKVHLNGEVLKLK 355

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEEN 312
                      F G    Y ++  + R        T   E          E   A  +  
Sbjct: 356 D----------FKGYCDLYAKSIAKERMDEEGGTPTCSVEMDKDKGHPRWEVGFAVSDGT 405

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSV 372
            +  S+ N+I T  GG+H   +   +T        L + K+  ++    L       ++ 
Sbjct: 406 FQQVSFVNSIATTSGGSHVDYIANQVTAY--LLKALNKKKKGHTLKQSHLKNHIFIFVNC 463

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
            I  P F  QTK  + +  +Q   +  L + F   + +     ++ ++ +++ +E +  +
Sbjct: 464 LIDNPAFNSQTKEHMTTKTSQFGSKCQLGEDFLKKVAK-----SEAIQNIMDFAERKADK 518

Query: 433 RKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR---NRSNQAV 489
              +    K +        +         H   L + EGDSA G A   R   +     V
Sbjct: 519 MLAKSDGNKRSRVSNAKLVEANLAGTRRGHECTLILTEGDSAKGLAVSGRAILDPDRIGV 578

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDG 548
            PLRGK+LNV  A  ++I  NQ+I ++ Q LG + +  Y +   LRY  ++IM D D DG
Sbjct: 579 FPLRGKLLNVRDASVDQITKNQEIQNIKQFLGLKHKQVYTDTKSLRYGHLMIMADQDHDG 638

Query: 549 AHIASLLLTFFYQEMYDLIEQK-HLFLISPPLFRITQG---TKS---VYAHDEEHKQKIL 601
           +HI  LL+ F   +   L++          P+ ++ QG    K         +   ++  
Sbjct: 639 SHIKGLLINFLQVQFPSLLKVPDFFREFITPIVKVWQGPNPKKPLRLKSFFTQPEYEEWK 698

Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
           E+  K   G+     +KGLG       +    + +   L   E+ K          + +K
Sbjct: 699 ED-HKDDMGRWHSKYYKGLGTSSNEDAQVYFTNLDDH-LKEFEVMK-PEEADLLDLAFSK 755

Query: 662 LMGTKADERFKFIQE--RASFID 682
               KAD R +++      +++D
Sbjct: 756 ---KKADARKEWLGNFVPGTYLD 775


>gi|241079549|ref|XP_002408893.1| DNA gyrase subunit B, putative [Ixodes scapularis]
 gi|215492575|gb|EEC02216.1| DNA gyrase subunit B, putative [Ixodes scapularis]
          Length = 538

 Score =  363 bits (931), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 201/552 (36%), Positives = 294/552 (53%), Gaps = 33/552 (5%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MY   T      H+  EVIDNA DE +AG+A  + V+L  +G + V D+GRGIPV  HP+
Sbjct: 1   MY---TRTDNPLHIVQEVIDNAADEALAGFARTLTVTLLEDGGIQVEDDGRGIPVGLHPE 57

Query: 124 FPNKSTLEIILTTLHAGGKFDN---STYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
             N   +E++ T LHAGGKFD      Y  SGGLHGVG+SV NALS  L V V R     
Sbjct: 58  -ENAPVVELVFTRLHAGGKFDKLNGGAYAFSGGLHGVGVSVTNALSRRLEVLVWRDGQAN 116

Query: 181 SQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
              F+ G    PL +   V + K GTR+   PDPK F   A    A+L  +  SKA L  
Sbjct: 117 EIVFADGELEQPLTQTGTVGKRKTGTRVRVWPDPKYFDS-AQIPLAQLTHILHSKAVLLE 175

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS----EIFTGKTEKK 295
            V       K         +++++ +  GL+ YLQ +++   L+        +  + +  
Sbjct: 176 GVTVELVQQK-------TGQRQQWCYEDGLRGYLQEEMDGVELLVPLFEGRQYAPQDDDN 228

Query: 296 GTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE-LTQNKR 353
            +      W +AW  + N    SY N I T  GGTHESGLR  L + ++ +AE  +   +
Sbjct: 229 FSAGEGAHWVVAWALDSNIVRESYVNLIPTPAGGTHESGLRDGLYQAVRSFAELHSLIPK 288

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
            + + ++D+   A  +LS  + +P+F GQ K KL S DA R V   +R+  + +L  N  
Sbjct: 289 GVKLQAEDVFARASFVLSAKVLDPQFQGQIKEKLNSRDAVRLVSGYVRNALELHLHANVD 348

Query: 414 EATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           +  KL E  + +++ R R    ++V ++ +     LPGKL DC  +    +ELF+VEGDS
Sbjct: 349 QGRKLAEVAVRQAQARTR--SAQKVEKRKSSGVAVLPGKLTDCESHDLESSELFLVEGDS 406

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED- 532
           AGGSAK  R++  QA+LPLRGK+LN      +++  NQ+I D+  A+G        E D 
Sbjct: 407 AGGSAKMGRDKEFQAILPLRGKVLNAWEVDKDRLFANQEIHDISVAIGVDPHDAQSEPDL 466

Query: 533 --LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI------TQ 584
             LRY ++ I++DADVDG+HI  LLLT F++    LIE  H+++  PPLFR+       +
Sbjct: 467 SGLRYGRICILSDADVDGSHIQVLLLTLFFRHFPKLIEAGHVYVARPPLFRVDVPAAGKR 526

Query: 585 GTKSVYAHDEEH 596
             + +Y  D+  
Sbjct: 527 PARKIYCLDQGE 538


>gi|166154003|ref|YP_001654121.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis 434/Bu]
 gi|166154878|ref|YP_001653133.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335202|ref|ZP_07223446.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis L2tet1]
 gi|165929991|emb|CAP03474.1| DNA gyrase subunit B [Chlamydia trachomatis 434/Bu]
 gi|165930866|emb|CAP06428.1| DNA gyrase subunit B [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 605

 Score =  363 bits (931), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 174/652 (26%), Positives = 285/652 (43%), Gaps = 64/652 (9%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           Y  SSI  L  L+ +R+R GMYIG        E  ++ LF EV+DNA+DE + GY + I 
Sbjct: 7   YSESSIISLASLDHIRLRAGMYIGRLGDGSQAEDGIYTLFKEVVDNAIDEFVMGYGHTIH 66

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           ++ D    L++ D GRGIP+           +   ++ ++ G K+    +  S GL+GVG
Sbjct: 67  ITGDA-HELSIRDEGRGIPLGK---------VIDCVSKINTGAKYTQDVFHFSVGLNGVG 116

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +  VNALS    V   R        FS+G  +    ++   ++  GT + F PD ++F +
Sbjct: 117 LKAVNALSQHFSVRSVRNKKFLKASFSKG--ILLHTEQGATQDPDGTEVVFSPDHELFEN 174

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +   YL   +   ++ ++                  GL    + +++
Sbjct: 175 -FSFQVEFLKKKIRQYTYLHPGLTIIYNGERI-------------VSTRGLLDLFEEEVQ 220

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
              L S   F                       + +  S+ N   T +GGTH    +  +
Sbjct: 221 TPLLYSPITFQYS--------DLAFLFSHTETSSEQYFSFVNGQETTDGGTHLVAFKEGI 272

Query: 339 TRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +G+ ++          +  S D+     G +++ I  P F  QTK KL + + +  +  
Sbjct: 273 VKGVNEFFG-------KNFSSQDIREGLAGCIAIKIASPIFESQTKNKLGNTNIRAELAK 325

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            +++     L +NP  A ++ E +    + R   +  ++  +    +      KL DC  
Sbjct: 326 RVKEAVLSSLKKNPSSAERIQEKIKLNEKTRKNAQFLKQELKDKQKKLHYKIPKLRDCKF 385

Query: 459 N------IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           +          + +FI EG+SA  S   +RN   QAV  LRGK +NV S+  E I  N +
Sbjct: 386 HLTDNSLYGKNSSIFITEGESASASILASRNPLTQAVFSLRGKPMNVFSSKEETIYKNDE 445

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           +  L  ALG    S    ++LRY +VI+ TDADVDG HI +L++TFF +    L+   HL
Sbjct: 446 LFYLATALGLHKDSL---QNLRYNQVILATDADVDGMHIRNLMITFFLKTFLPLVASNHL 502

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           F++  PLF++     + Y + EE K   +E   K  +  +EI+RFKGLGE+   + K   
Sbjct: 503 FILETPLFKVRHKDATFYCYSEEEKLSTIEHIGKK-ESSLEITRFKGLGEISPKEFKSFI 561

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
                  L  V +       +     +   MG    ER  FI E    + ++
Sbjct: 562 G--ADMRLTPVSLPD----TETLDTLLQFYMGKNTKERKLFIIEN--LVTNL 605


>gi|255349049|ref|ZP_05381056.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis 70]
 gi|255503587|ref|ZP_05381977.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis 70s]
          Length = 605

 Score =  362 bits (930), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 171/652 (26%), Positives = 288/652 (44%), Gaps = 64/652 (9%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           Y  SSI  L  L+ +R+R GMYIG        E  ++ LF EV+DNA+DE + GY + I 
Sbjct: 7   YSESSIISLASLDHIRLRAGMYIGRLGDGSQAEDGIYTLFKEVVDNAIDEFVMGYGHTIH 66

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           ++ D    L++ D GRGIP+           +   ++ ++ G K+    +  S GL+GVG
Sbjct: 67  ITGDA-HELSIRDEGRGIPLGK---------VIDCVSKINTGAKYTQDVFHFSVGLNGVG 116

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +  VNALS    V   R        FS+G  +    ++   ++  GT + F PD ++F +
Sbjct: 117 LKAVNALSQHFSVRSVRNKKFLKASFSKG--ILLHTEQGATQDPDGTEVIFSPDHELFEN 174

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +   YL   +   ++ ++ ++ +  +   E        +        
Sbjct: 175 -FSFQVEFLKKKIRQYTYLHPGLTIIYNGERIVSTRGLLDLFE-------EEVQTPLLYS 226

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
             +   S++    +  +                + +  S+ N   T +GGTH    +  +
Sbjct: 227 PITFQHSDLAFLFSHTE--------------TSSEQYFSFVNGQETTDGGTHLVAFKEGI 272

Query: 339 TRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +G+ ++          +  S D+     G +++ I  P F  QTK KL + + +  +  
Sbjct: 273 VKGVNEFFG-------KNFSSQDIREGLAGCIAIKIASPIFESQTKNKLGNTNIRAELAK 325

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            +++     L +NP  A ++ E +    + R   +  ++  +    +      KL DC  
Sbjct: 326 RVKEAVLSSLKKNPSSAERIQEKIKLNEKTRKNAQFLKQELKDKQKKLHYKIPKLRDCKF 385

Query: 459 N------IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           +          + +FI EG+SA  S   +RN   QAV  LRGK +NV S+  E I  N +
Sbjct: 386 HLTDNSLYGKNSSIFITEGESASASILASRNPLTQAVFSLRGKPMNVFSSKEETIYKNDE 445

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           +  L  ALG    S    ++LRY +VI+ TDADVDG HI +L++TFF +    L+   HL
Sbjct: 446 LFYLATALGLHKDSL---QNLRYNQVILATDADVDGMHIRNLMITFFLKTFLPLVASNHL 502

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           F++  PLF++     + Y + EE K   +E   K  +  +EI+RFKGLGE+   + K   
Sbjct: 503 FILETPLFKVRHKDATFYCYSEEEKLSTIEHIGKK-ESALEITRFKGLGEISPKEFKSFI 561

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
                  L  V +       +     +   MG    ER  FI E    + ++
Sbjct: 562 G--ADMRLTPVSLPD----TETLDTLLQFYMGKNTKERKLFIIEN--LVTNL 605


>gi|331270971|ref|YP_004385682.1| putative DNA gyrase B subunit [Clostridium botulinum BKT015925]
 gi|329127363|gb|AEB77307.1| putative DNA gyrase B subunit [Clostridium botulinum BKT015925]
          Length = 1417

 Score =  362 bits (930), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 158/679 (23%), Positives = 296/679 (43%), Gaps = 55/679 (8%)

Query: 47  SSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGF 106
           + ++ L+G E VR R  + +G  D +   H   E++ N++D    G+ N I+V    +  
Sbjct: 2   ADLKRLKGSERVRKRVSVMMGSDDIRGCQHTLFEIVSNSIDRHRKGFGNYIKVIKYEDLS 61

Query: 107 LTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALS 166
            T++D+  G+P++ + K  N    ++ L  L+AG  +D ++   + G++G+G+      S
Sbjct: 62  YTIIDHADGLPMDWNDK-ENAYNWDLALKVLYAGDNYDANS--TALGINGLGLCSSQYAS 118

Query: 167 DELHVTVARQNTIFSQKFSRGIPLSPLE----------------------KKEKVRNKRG 204
           + + V   +    ++ K  +G P+                           +    +K G
Sbjct: 119 EYMKVISYKDGKKYTVKCKKGRPIDKETEEFICGDDDNLFTKEQGERVLLVESNTESKTG 178

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I ++PD ++F +        +      ++ ++  +K     +KE        +    Y
Sbjct: 179 TYIHYKPDLEVFTNI-DISIDWINDKLDKQSMVNKGLKIEVYDEKE-------DKLYTHY 230

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTE-----KKGTHRGTVEWAIAWCEENPEITSYC 319
           +  G+K Y++T  ++ +      FT K +      K  +    E A+ +  E  ++  Y 
Sbjct: 231 YESGIKDYIKTISDDNNFSDVIYFTDKGKGRDKVDKPEYDYNYEIALVFNNEINKLEYYH 290

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N+    +GG+    + +A T  I +YA+     NK    I   D+  S + ++S F    
Sbjct: 291 NSSELLQGGSTADAINLAFTYAINEYAKDNNLFNKNESKIKFTDIQDSLICVISSFSTMT 350

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
            +A QTK  + +   +     +L++    Y ++N +EA +++  ++       +  K + 
Sbjct: 351 SYANQTKLSIDNKFIKDFTNQSLKEKLKLYFIENKLEADRVVNQILINKRANDKAEKTKL 410

Query: 438 VNRKTAIRKLRL--PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
             +KT   K           C+ N    TEL++ EG SA GS    RN   QA   + GK
Sbjct: 411 NIKKTLQTKSNFDDTDNFYACTSNDKSITELYLAEGSSAQGSIVMGRNSKFQACYHVGGK 470

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED---------LRYEKVIIMTDADV 546
           +L++  A  EKI  N+ + +L Q LGC    + +            L Y K+I+ TD D 
Sbjct: 471 MLSLLKADFEKIFKNKVVRELFQYLGCGIEIKSKHNKDLNTFDENNLNYSKIILATDQDT 530

Query: 547 DGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKK 606
           D   I  L+LT  ++    LI+  ++++   PL+ IT   K  +A+ EE K  ILE+  K
Sbjct: 531 DAFQIRCLMLTAIHRLAPTLIKHGYVYIAESPLYEITTADKVYHAYTEEEKITILEKLSK 590

Query: 607 HGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK 666
            G    +  R KGLGE+ +  + ET M+   R + RV +      ++   ++    +G +
Sbjct: 591 KGIKYDKPERNKGLGEVDSDIIAETMMNPKTRKITRVTVQD----VEKMANTFELWLGDE 646

Query: 667 ADERFKFIQERASFIDDVG 685
              R + I     +I+   
Sbjct: 647 VKPRKEVITSNFDYIEHFD 665


>gi|289525705|emb|CBJ15186.1| DNA gyrase subunit B [Chlamydia trachomatis Sweden2]
 gi|296435274|gb|ADH17452.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis E/150]
 gi|296438993|gb|ADH21146.1| DNA topoisomerase IV subunit B [Chlamydia trachomatis E/11023]
          Length = 605

 Score =  362 bits (930), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 171/652 (26%), Positives = 288/652 (44%), Gaps = 64/652 (9%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           Y  SSI  L  L+ +R+R GMYIG        E  ++ LF EV+DNA+DE + GY + I 
Sbjct: 7   YSESSIISLASLDHIRLRAGMYIGRLGDGSQAEDGIYTLFKEVVDNAIDEFVMGYGHTIH 66

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           ++ D    L++ D GRGIP+           +   ++ ++ G K+    +  S GL+GVG
Sbjct: 67  ITGDA-HELSIRDEGRGIPLGK---------VIDCVSKINTGAKYTQDVFHFSVGLNGVG 116

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +  VNALS    V   R        FS+G  +    ++   ++  GT + F PD ++F +
Sbjct: 117 LKAVNALSQHFSVRSVRNKKFLKASFSKG--ILLHTEQGATQDPDGTEVIFSPDHELFEN 174

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +   YL   +   ++ ++ ++ +  +   E        +        
Sbjct: 175 -FSFQVEFLKKKIRQYTYLHPGLTIIYNGERIVSTRGLLDLFE-------EEVQTPLLYS 226

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
             +   S++    +  +                + +  S+ N   T +GGTH    +  +
Sbjct: 227 PITFQHSDLAFLFSHTE--------------TSSEQYFSFVNGQETTDGGTHLVAFKEGI 272

Query: 339 TRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +G+ ++          +  S D+     G +++ I  P F  QTK KL + + +  +  
Sbjct: 273 VKGVNEFFG-------KNFSSQDIREGLAGCIAIKIASPIFESQTKNKLGNTNIRAELAK 325

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            +++     L +NP  A ++ E +    + R   +  ++  +    +      KL DC  
Sbjct: 326 RVKEAVLSSLKKNPSSAERIQEKIKLNEKTRKNAQFLKQELKDKQKKLHYKIPKLRDCKF 385

Query: 459 N------IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           +          + +FI EG+SA  S   +RN   QAV  LRGK +NV S+  E I  N +
Sbjct: 386 HLTDNSLYGKNSSIFITEGESASASILASRNPLTQAVFSLRGKPMNVFSSKEETIYKNDE 445

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           +  L  ALG    S    ++LRY +VI+ TDADVDG HI +L++TFF +    L+   HL
Sbjct: 446 LFYLTTALGLHKDSL---QNLRYNQVILATDADVDGMHIRNLMITFFLKTFLPLVASNHL 502

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           F++  PLF++     + Y + EE K   +E   K  +  +EI+RFKGLGE+   + K   
Sbjct: 503 FILETPLFKVRHKDATFYCYSEEEKLSTIEHIGKK-ESALEITRFKGLGEISPKEFKSFI 561

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
                  L  V +       +     +   MG    ER  FI E    + ++
Sbjct: 562 G--ADMRLTPVSLPD----TETLDTLLQFYMGKNTKERKLFIIEN--LVTNL 605


>gi|256422122|ref|YP_003122775.1| DNA topoisomerase IV subunit B [Chitinophaga pinensis DSM 2588]
 gi|256037030|gb|ACU60574.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Chitinophaga pinensis DSM 2588]
          Length = 640

 Score =  362 bits (930), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 188/680 (27%), Positives = 295/680 (43%), Gaps = 82/680 (12%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMD 87
                +  S  Y   SIR L+  E +R+RPGMYIG      + +  ++ L  EV DN +D
Sbjct: 2   ATTDKKDLSAAYTEDSIRSLDWREHIRLRPGMYIGKLGDGSSMDDGIYILLKEVADNCID 61

Query: 88  EVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST 147
           E   G+   I++ +  +  +T+ D GRGIP+           +  +++ ++ G K+D+  
Sbjct: 62  EHTMGFGKQIDIRVTEHN-VTIRDYGRGIPLGK---------VVDVVSKINTGAKYDSKA 111

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           ++ S GL+GVG   VNALS    V   R+      +F RG      ++        GT +
Sbjct: 112 FQKSVGLNGVGTKAVNALSSYFRVESFREGRGKVAEFERGNLTKEHKEA-NTSEPNGTLV 170

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
           TF PD  +F +   F    L     +  +L+  +   ++  K             +    
Sbjct: 171 TFTPDDTVFRNYR-FIPEFLENQIWNYCFLNAGLTISFNGKK-------------YISKN 216

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           GL   LQ K     L    I              +E AI    +   E  S+ N   T +
Sbjct: 217 GLLDLLQRKTNEDELRYPIIHL--------KGEDIEVAITHENQYGEEYYSFVNGQHTTQ 268

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           GGTH +  R A  + ++ +      K+       D+  S    +SV ++EP F  QTKTK
Sbjct: 269 GGTHLAAFREAFVKTLRDFY-----KKDYEAT--DIRASICAAISVRVQEPVFESQTKTK 321

Query: 387 LVS-------LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN 439
           L S          +  V + L    D +L +NP  A  L + + +   ER      +++ 
Sbjct: 322 LGSLTVFENGPSMKAFVLDFLSKHLDDFLHKNPTTAEALKKRIEQSERERKELAGIKKLA 381

Query: 440 RKTAIRKLRLPGKLADCSQNIAH---------------GTELFIVEGDSAGGSAKQARNR 484
            + A +      KL DC  ++                  T +FI EGDSA GS  ++RN 
Sbjct: 382 NERAKKANLHNRKLRDCRIHLNEEVSGKDKNDLETKRLNTTIFITEGDSASGSITKSRNV 441

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QAV  LRGK LN      + +  N++   L  AL          E LRY ++++ TDA
Sbjct: 442 ETQAVFSLRGKPLNSFGLTKKIVYENEEFNLLQHALNIEEGL----EGLRYNRIVVATDA 497

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           DVDG HI  LLLTFF Q   DL++  HL+++  PLFR+    +++Y + +E + K +++ 
Sbjct: 498 DVDGMHIRLLLLTFFLQFFPDLVKNGHLYILETPLFRVRNKQQTIYCYTDEERIKAIKKL 557

Query: 605 KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMG 664
                 K EI+RFKGLGE+   +      D     +  V ++KD +     Q  +   MG
Sbjct: 558 GN----KPEITRFKGLGEISPDEFANFIND--DMKVEPVILSKDTH----IQKLLEYYMG 607

Query: 665 TKADERFKFIQERASFIDDV 684
                R +FI     +  D+
Sbjct: 608 KNTQTRQEFIIGNLRYEKDL 627


>gi|326921999|ref|XP_003207240.1| PREDICTED: DNA topoisomerase 2-beta-like, partial [Meleagris
           gallopavo]
          Length = 1688

 Score =  362 bits (930), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 125/694 (18%), Positives = 240/694 (34%), Gaps = 110/694 (15%)

Query: 15  QSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE--- 71
            +Q S+ K ++S  +  +      S    Y          LE + +RP  YIG  +    
Sbjct: 139 DNQISASKKEESESVNKNDTSKKMSVERVYQKK-----TQLEHILLRPDTYIGSVEPLTQ 193

Query: 72  -------------------KALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN-GFLTVV 110
                                L+ +F E++ NA D          I++S+D     +++ 
Sbjct: 194 LMWVYDEDVGMNCREVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKISIDPESNIISIW 253

Query: 111 DNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELH 170
           +NG+GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  
Sbjct: 254 NNGKGIPVVEH-KVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFT 312

Query: 171 VTVARQNTIFSQK--FSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAAR 226
           V  A +    S K  +   +  +   K +       T ITF+PD              + 
Sbjct: 313 VETACKEYKHSFKQTWMNNMMKTSEPKIKHFEGDDYTCITFQPDLSKFKMEKLDKDIVSL 372

Query: 227 LLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSE 286
           + +     A     VK   +  K                  G ++Y+   ++++   +  
Sbjct: 373 MTRRAYDLAGSCKGVKVMLNGKKLPV--------------NGFRSYVDLYVKDKLDETGV 418

Query: 287 IFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYA 346
                 E         +  +   E+  +  S+ N+I T +GG H   +   +   + +  
Sbjct: 419 ALKVIHE---VVNERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIE-V 474

Query: 347 ELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
              +NK  +S+    +       ++  I  P F  QTK  +         +  L + F  
Sbjct: 475 VKKKNKAGVSVKPFQVKNHIWVFVNCLIENPSFDSQTKENMTLQPKSFGSKCQLSEKFFK 534

Query: 407 YLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
               N      +L WV  +++      +  +        K++   KL D           
Sbjct: 535 -AASNCGIIESILNWVKFKAQ-----TQLNKKCSSVKHSKIKGIPKLDDA---------- 578

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS 526
                                          N A     +I  N +I ++++ +G + + 
Sbjct: 579 -------------------------------NDAGNFFMQIMENAEINNIIKIVGLQYKK 607

Query: 527 QYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI 582
            Y + +    LRY K++IMTD D DG+HI  LL+ F +     L++   L     P+ + 
Sbjct: 608 SYEDPESLKSLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKA 667

Query: 583 TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLR 642
           ++  + +  +      +  +  + H     +I  +KGLG   A + KE   D  +  +L 
Sbjct: 668 SKNKQELSFYSIPEFDEWKKHMENH--KAWKIKYYKGLGTSTAKEAKEYFADMERHRILF 725

Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
                          + +K    K D+R +++  
Sbjct: 726 --RYAGPEDDAAITLAFSK---KKIDDRKEWLTN 754


>gi|315940103|gb|ADU56230.1| DNA gyrase subunit B [Nocardia rhamnosiphila]
          Length = 505

 Score =  362 bits (930), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 181/513 (35%), Positives = 280/513 (54%), Gaps = 36/513 (7%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MYIG T E+ LHHL  EV+DN++DE +AG+A  +EV+L  +G + VVD+GRGIPV  H +
Sbjct: 1   MYIGSTGERGLHHLIWEVVDNSVDEAMAGHATRVEVTLLADGGVQVVDDGRGIPVAMHAQ 60

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
                T+E+++T LHAGGKFD+ +Y +SGGLHGVGISVVNALS  L   V      +SQ 
Sbjct: 61  --GIPTIEVVMTQLHAGGKFDSDSYAVSGGLHGVGISVVNALSSRLEAEVDTDGYHWSQT 118

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           +   +P      + +     GT I F  DP +F     ++   + +  Q  A+L+  +  
Sbjct: 119 YKDAVPGQL--VQGEPTKTTGTTIRFWADPAVFET-TTYNFETVSRRLQEMAFLNKGLTI 175

Query: 244 CWSCDKEIA---------EKYGIPEKEE---------------FYFPGGLKTYLQTKLEN 279
             + ++            +    P+ ++               +++PGGL+ +++     
Sbjct: 176 VLTDERVSDTEITDEVVSDTAEAPKHDDNGEKAAAEPKVKTRTYHYPGGLEDFVRHINRT 235

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  I + + +   +  G     +E A+ W       + ++ NTI T EGGTHE G R AL
Sbjct: 236 KQPIHNSVVSFNGKGPGH---ELEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAAL 292

Query: 339 TRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           T  + +YA+  +  +    ++  DD+      I+SV + EP+F GQTKTKL + + +  V
Sbjct: 293 TTVVNRYAKEKKLLKEKDGNLTGDDIREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFV 352

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
           + +  +   H+   NP +A  ++   +  ++ R+  RK RE V RK+A     LPGKLAD
Sbjct: 353 QRSCNEHLAHWFEANPADAKTIVNKAVSSAQARVAARKARELVRRKSATDIGGLPGKLAD 412

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C       +E++IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +K+  N ++  
Sbjct: 413 CRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDKVLKNAEVQS 472

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           ++ A G     ++    LRY K+++M DADVDG
Sbjct: 473 IITAFGTGIHDEFDIAKLRYHKIVLMADADVDG 505


>gi|258647743|ref|ZP_05735212.1| putative DNA topoisomerase IV, B subunit [Prevotella tannerae ATCC
           51259]
 gi|260852588|gb|EEX72457.1| putative DNA topoisomerase IV, B subunit [Prevotella tannerae ATCC
           51259]
          Length = 683

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 194/713 (27%), Positives = 297/713 (41%), Gaps = 126/713 (17%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            YD S IR L+  E +R RPGMYIG        E  ++ L  E IDN++DE   G+   I
Sbjct: 14  TYDESKIRHLDDTEHIRTRPGMYIGRLGDGSHAEDGIYVLLKESIDNSIDEFNEGFGKRI 73

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           EVS+D +   T+ D GRGIP+          +L   ++ L+ G K+D S +  S GL+GV
Sbjct: 74  EVSIDNDRAATIRDYGRGIPLG---------SLVDAVSKLNTGAKYDTSVFTASVGLNGV 124

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+  VNALS +  V   R+  +    F RG         E    + GT + F PDP++F 
Sbjct: 125 GLKAVNALSLKFVVRSYREGRMHEATFERGRLQEDH--YEDTHEEDGTYVYFEPDPELFL 182

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F+   +  M ++  YL+  +    +  + I                GL+  L   +
Sbjct: 183 HFH-FEDETVDTMLRNYTYLNTGLAIFLNGRRII-------------SRNGLEDLLNDNM 228

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
               L       G           ++ A     +   E  S+ N   T  GGTH+S  + 
Sbjct: 229 TAPGLYPIIHLKGD---------NIDIAFTHTSQYGEEYYSFVNGQHTTLGGTHQSAFKE 279

Query: 337 ALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR-- 394
            + R IK++          +    D+    V  +SV + EP F  QTK KL SL      
Sbjct: 280 HIARTIKEHFG-------KNFDVQDVRNGLVAAISVRVIEPMFESQTKIKLGSLMMAPTK 332

Query: 395 ----------------TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
                            V + +++  D+YL +N   A  +L+ + +   +R       ++
Sbjct: 333 DKDGHPFPLSGVSVNKFVGDFIKEQVDNYLHKNLDTAEVMLQKIQDSERDRKAMAGVTKL 392

Query: 439 NRKTAIRKLRLPGKLADC--------------SQNIAHGTELFIVEGDSAGGSAKQARNR 484
            R+ A +      KL DC                +    + LFI EG+SA GS  ++R+ 
Sbjct: 393 ARERAKKANLHNAKLRDCRIHLNEAPKKGYNKDNDPRFDSSLFITEGNSASGSITKSRDA 452

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
           + QAV  LRGK LN      E +  N++   L  AL          + LRY KVI+ TDA
Sbjct: 453 NTQAVFSLRGKPLNCFGKTKEVVYKNEEFSLLQSALNIEDGL----DGLRYNKVIVATDA 508

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTK----------------- 587
           DVDG HI  L++TFF Q   +LI++ H++++  PLFR+    K                 
Sbjct: 509 DVDGMHIRLLMITFFLQFFPELIKKGHVYILQTPLFRVRNKVKSAGRRKQQKQVSDDAAG 568

Query: 588 ----------------SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
                           ++Y + EE +   +E          EI+RFKGLGE+   + K  
Sbjct: 569 AAILKKQKSDSRSDYETIYCYTEEERLSAIERLGPD----PEITRFKGLGEISPDEFKH- 623

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
            +    R L +V ++K           +   MG    ER +FI +     +D+
Sbjct: 624 FIGPEIR-LEQVTLHKSDQVGA----LLEYYMGKNTMERQEFIIDNLVVEEDL 671


>gi|167391639|ref|XP_001739872.1| DNA topoisomerase [Entamoeba dispar SAW760]
 gi|165896290|gb|EDR23749.1| DNA topoisomerase, putative [Entamoeba dispar SAW760]
          Length = 1351

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 146/694 (21%), Positives = 261/694 (37%), Gaps = 83/694 (11%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD----------------------- 70
           +   +   D Y       L   E +  RP  YIG  +                       
Sbjct: 2   SKEKEKLEDIY-----VKLSHKEQILTRPDTYIGSIERNDEQVWLYEEPTEQYEEGRMVQ 56

Query: 71  -----EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGNGFLTVVDNGRGIPVENHPKF 124
                   L  ++ E++ NA D          I+V++     +TV +NG+GIP+E H K 
Sbjct: 57  KVISLAPGLFKIYDEILVNASDNFQRDPKMTTIKVTI-EGNSITVYNNGKGIPIEIHKK- 114

Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184
            N    E+I   L     + +   +++GG +G G  + N  S +  +       I+ Q +
Sbjct: 115 ENIYIPELIFGHLLTSSNYKDDDKKVTGGRNGYGAKLANIFSTKFSIETCDGKKIYKQTW 174

Query: 185 SRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGD--KAGFDAARLLKMTQSKAYLSGRV 241
              +      + E V+  +  T++TF PD K F            L++     A  +   
Sbjct: 175 KNNMSDKEEPEIESVKKVEEYTKVTFTPDYKRFQMKGMEDDARRLLIRRAYDIAGCNPGK 234

Query: 242 KTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
           +   +  K   + +                Y +  + +  ++S +               
Sbjct: 235 RIWINGKKVCFKNF--------------AEYARMYVGDEPIVSEK-----------AGER 269

Query: 302 VEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDD 361
            +  +   +  P   S+ N+I T  GGTH   +   +T+ + +      NK+   I    
Sbjct: 270 WDICVCASKGEPMQISFVNSINTSHGGTHVDYVTGLMTKYLAE-KMKKLNKKGAEIKPFQ 328

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
           +       ++  I  P F  QTK  L +   +   +  L D F    +        +L W
Sbjct: 329 IKNHLFVFVNSLIENPAFDSQTKETLKTQVNKFGSKPTLSDKFFK-ELGKLSVVDDILAW 387

Query: 422 VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
            I++ E  L +   ++  R T I KL    K         +   L + EGDSA   A   
Sbjct: 388 AIKKGEMDLNKSGGKKTARITGIPKLDDANK---AGTKEGNLCTLILTEGDSAKTLAVSG 444

Query: 482 RN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEK 537
            +   R    V PLRGK LN       K++ NQ+  ++ + +G R    Y   + LRY  
Sbjct: 445 LSVVGRDYYGVFPLRGKPLNAREIAPSKVKENQEFENIAKIMGLRYGKVYSSINELRYGS 504

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIE-QKHLFLISPPLFRITQGTKSVYAHDEEH 596
           V+IM D D DG+HI  LL+ +F+     L++    L     P+ ++ +G + +       
Sbjct: 505 VMIMADQDFDGSHIKGLLINYFHTFWPSLLKIDNFLVEFITPIVKVKRGKQEISFFTLPQ 564

Query: 597 KQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             +  +   + G+  K EI  +KGLG    S  K    D +   +         +S +  
Sbjct: 565 FNEWKDARIQEGQLKKWEIKYYKGLGTSKDSDAKAYFSDLDTHKIKFA--YDGASSDEVI 622

Query: 656 QDSINKLMGTKADERFKFI--QERASFID-DVGT 686
             + N+    +AD+R +++   +  +++D DV +
Sbjct: 623 DLAFNR---KRADDRKEWLKGYDPNTYLDQDVDS 653


>gi|117575063|emb|CAJ43811.1| gyrase subunit beta [Candidatus Midichloria mitochondrii]
          Length = 477

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 189/487 (38%), Positives = 284/487 (58%), Gaps = 15/487 (3%)

Query: 59  RMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIP 117
           R RPGMYIG TD+   LHH+  EV+DNA+DE + G+   I V+++ +G +TVVD+GRGIP
Sbjct: 1   RKRPGMYIGDTDDGSGLHHMVKEVVDNAIDEALQGFCRFIYVAINPDGSVTVVDDGRGIP 60

Query: 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN 177
            + HP+    S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALS  L + + R  
Sbjct: 61  TDIHPE-EGVSAAEVIMTQLHAGGKFDTNSYKVSGGLHGVGVSVVNALSKWLKLRIWRDG 119

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
                KF  G+ +  LE       KRGT +TF P  +IF     F  + L    +  ++L
Sbjct: 120 KEHFVKFVDGVAVKSLEVVGDAGGKRGTEVTFLPSSEIFTT-TEFSFSALEHRLKELSFL 178

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V+      +        P+  EFYF GG+K ++    +++  +S  I+   ++K  +
Sbjct: 179 NSGVRIKIEDLR-----AEPPKSSEFYFEGGVKEFVHDLDKSKKAVSKIIYMSGSDKDIS 233

Query: 298 HRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAI 355
               ++W  ++ E    +  + N I   +GGTH +G R A+TR    Y     +  K+ +
Sbjct: 234 AELALQWNDSYHE---NMLCFTNNIRQSDGGTHLAGFRAAITRSFNSYVERMPSFKKQKL 290

Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415
           SI  +D+      +LS  + +P+F+ QTK KLVS + +  VE+ + D    +L +NP EA
Sbjct: 291 SIAPEDIREGLTCVLSAKVPDPKFSSQTKDKLVSSEVRPVVESIVFDNLSKWLEENPNEA 350

Query: 416 TKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSA 474
             ++  +IE S  R   RK RE+ R+ + +    LPGKLA+C + I    ELF+VEGDSA
Sbjct: 351 KTIVAKIIEASAAREAARKARELKRQKSDLDMANLPGKLANCQEKIPEICELFLVEGDSA 410

Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDL 533
           GGSAKQAR+R  QA+LPL+GKILNV  A   K+ ++ +I  L+ A+G     +++  + L
Sbjct: 411 GGSAKQARDRRIQAILPLKGKILNVERARFNKMLSSAEIGTLITAIGTSIGDNKFDIDKL 470

Query: 534 RYEKVII 540
           RY K+II
Sbjct: 471 RYHKIII 477


>gi|328876909|gb|EGG25272.1| DNA topoisomerase II [Dictyostelium fasciculatum]
          Length = 1233

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 138/717 (19%), Positives = 264/717 (36%), Gaps = 83/717 (11%)

Query: 16  SQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD----- 70
              ++   +         +  ++S  D Y   +       E V +RP  YIG        
Sbjct: 63  QDNNNFNKRLYSASTIGGSSKSKSIEDIYQKKTPT-----EHVLLRPDSYIGTIQRIEDD 117

Query: 71  ------------------------------------EKALHHLFSEVIDNAMDEVIAGY- 93
                                                  L  +F E++ NA D       
Sbjct: 118 QWVLSNSEFNQETKKKSSSSSATPVAPFIHHIKAKYIPGLLKIFDEILVNAADNKQRDPA 177

Query: 94  ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
            + I V +D + G ++++++G GIPV  H K      +E+++ +L +G  F+++  ++ G
Sbjct: 178 MSTIRVDIDADKGSISIMNDGHGIPVSIH-KGEKIYVVEMVMGSLMSGSNFNDAELKVVG 236

Query: 153 GLHGVGISVVNALSDELHVTVARQNTI--FSQKFSRGIPLSPLEKKEKVRNKR---GTRI 207
           G +G G  + N  S +  V      +   +SQ +   +        + V        TRI
Sbjct: 237 GRNGFGAKLTNIFSSDFKVETYDAKSKLLYSQSWKDNMGKREEPIIKSVHPMNQQEFTRI 296

Query: 208 TFRPDPKIFGD---KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           TFRPD K F     +       + +     A     +K  ++            +  ++ 
Sbjct: 297 TFRPDLKRFHMESLRDDDVLKLMERRVYDIAACCPDIKVYFN-----------GQHIQYN 345

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILT 324
           F   +  +     +++    S+            R  +  A +   +     S+ N+I T
Sbjct: 346 FQSYVSLFEHHLSKHQEKNPSDTADNFVFANVGDRWKIGLATSDTGQF-MQVSFVNSINT 404

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
            +GGTH + +   + R I     L +    + I   ++       ++  I  P F  QTK
Sbjct: 405 LKGGTHVNFIADQVVRYISD--RLKKKYNDLEIRPMNIKHHLALFVNCLIDNPSFDSQTK 462

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI 444
             L +       +  + +P     V+N     K+  WV+ + +  L        ++ + +
Sbjct: 463 ETLTTKYQNFGSQPEIPEPVLAAFVKNSKILEKIAGWVLMKQQAELVHSSSTRTSKASLL 522

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVAS 501
           + +             +    L + EGDSA   A        R    V PLRGK+LNV  
Sbjct: 523 KNIHKLDDANWAGGQKSKLCTLILTEGDSAKSLAVSGLGVIGRDKYGVFPLRGKLLNVRD 582

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYR----EEDLRYEKVIIMTDADVDGAHIASLLLT 557
              +++ NN++I +L   LG   + +Y       DLRY K++IMTD D DG+HI  L++ 
Sbjct: 583 VTPKQLLNNEEINNLTNILGLSHKKKYIDEESMADLRYGKIMIMTDQDNDGSHIKGLIIN 642

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
           F +    +L+++  +     P+ ++++G++             ++  +        I  +
Sbjct: 643 FIHYFWPELLQRDFVEEFVTPIIKVSKGSEKKAFFTMNDYHNWVKNSQSGVTKGWTIKYY 702

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
           KGLG   +++ KE   +  K  +          S      + NK        R +++
Sbjct: 703 KGLGTNTSAEAKEYFSNLKKHIIKF--TWSGEPSSNAIAMAFNK---DAVQARQRWL 754


>gi|322695778|gb|EFY87581.1| DNA topoisomerase 2 [Metarhizium acridum CQMa 102]
          Length = 1653

 Score =  361 bits (925), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 155/717 (21%), Positives = 275/717 (38%), Gaps = 72/717 (10%)

Query: 10  STLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT 69
           S   P ++  ++ +          + ++++A++ Y     + L  LE +  RP  YIG  
Sbjct: 102 SGGVPLAEVENDSVIVDVPPTKPTSKSSKTATEMY-----QKLTQLEHIIKRPDTYIGSV 156

Query: 70  D-----------------------EKALHHLFSEVIDNAMDEVIA-GY-ANLIEVSLD-G 103
           +                           + +F E++ NA D     G     ++V+++  
Sbjct: 157 EKTDQQMWVYNKTTSQMEYKNITYVPGFYKIFDEIMVNAADNSQREGSGMTFMKVNINRE 216

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
            G ++V +NG+GIP+  H K       E+I   L AG  FD++  +  GG +G G  + N
Sbjct: 217 TGEISVENNGKGIPIVIHEK-EKIYIPEMIFGHLLAGSNFDDNEKKTVGGRNGYGAKLCN 275

Query: 164 ALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
             S E  V          + Q ++  +      K    ++    RITF+PD   FG   G
Sbjct: 276 VFSKEFTVECQDAGNGKKYKQTWTDNMQKMQKAKITSSKSADFVRITFKPDYDRFGMPEG 335

Query: 222 FDAA---RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
            D      L +     A     V+   + ++         +  +F     L         
Sbjct: 336 IDDDLEALLYRRVYDMAGTVHGVRVYLNGEQI--------KLRDFKAYCDLYAKSIAAER 387

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
                 +   T + +K  +H    E A    +   +  S+ N+I T  GGTH + +   +
Sbjct: 388 TAEEGGTPTCTVEIDKDKSH-PRWEVAFTVSDGTFQQVSFVNSIATTTGGTHVNYIADQI 446

Query: 339 TRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
           T        L + K+  S+    L       ++ FI  P F  QTK +L +  +Q   + 
Sbjct: 447 TGS--LLKALDKKKKGHSLKQSHLRNHIFIFINCFIENPAFNSQTKEQLTTKVSQFGSKC 504

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            L D F   + +     +  +E +++ ++++  +   +    K A        +      
Sbjct: 505 VLGDAFLKAIAK-----SDAIENIMDFAQKKADKMLSKSDGSKRARVSNAKLVEANLAGT 559

Query: 459 NIAHGTELFIVEGDSAGGSAKQAR---NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
              H   L + EGDSA G A   R   +     V PLRGK+LNV  A  ++I  NQ+I +
Sbjct: 560 RRGHECTLILTEGDSAKGLAVSGRAILDPDKIGVFPLRGKLLNVRDASLDQITKNQEIQN 619

Query: 516 LVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK-HLF 573
           + Q LG + +  Y +   LRY  ++IMTD D DG+HI  LL+ F   +   L++    L 
Sbjct: 620 IKQFLGLKHKQVYTDTKSLRYGHLMIMTDQDHDGSHIKGLLINFLQVQFPSLLKIPKFLQ 679

Query: 574 LISPPLFRITQG------TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
               P+ ++ QG       +      +    +  E  K     + +   FKGLG      
Sbjct: 680 EFITPIVKVWQGPDPKKPQRLKSFFTQPQYDEWKESHKAE-LSRWQSKYFKGLGTSSNED 738

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER--ASFID 682
            +    + +        +       +      +K    KAD R +++      +F+D
Sbjct: 739 AQVYFTNLDNHLKEFETMK--SEEAELFDLVFSK---KKADARKEWLGNYIPGTFLD 790


>gi|224007473|ref|XP_002292696.1| topoisomerase [Thalassiosira pseudonana CCMP1335]
 gi|220971558|gb|EED89892.1| topoisomerase [Thalassiosira pseudonana CCMP1335]
          Length = 1172

 Score =  360 bits (924), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 152/700 (21%), Positives = 264/700 (37%), Gaps = 85/700 (12%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-------------------------- 71
           ++  + Y          LE + +RP  YIG T+                           
Sbjct: 1   KTIEETYQMK-----TQLEHILLRPDTYIGSTEPLTQPMFVLSTTTNTPPSPPRIIQREV 55

Query: 72  ---KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPN 126
                   ++ E+I NA D        + ++V +D   G ++V +NG+GIPV  H K   
Sbjct: 56  TYTPGFLKIYDEIIVNAADNKQRDPNMDRLDVDIDVEGGVISVCNNGKGIPVVIH-KDQG 114

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK--F 184
                +I   L  G  FD+   + +GG +G G  + N  S E  V     N     K  F
Sbjct: 115 CYVPTMIFGHLLTGSNFDDDEMKTTGGRNGYGAKLANIFSTEFIVECVDSNEGLKFKQVF 174

Query: 185 SRGIPLSPLEKKEKV-----RNKRGTRITFRPDPKIFGDK--AGFDAARLLKMTQSKAYL 237
              +  +   K +K      +    T+ITF+PD + F            L K     A  
Sbjct: 175 RNNMHKTEEPKIKKCSASEMKKGDYTKITFKPDFEKFSMTRLNEDAVGLLAKRAYDIAGT 234

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
            G          +  +K  +    +     G K+YL          + E           
Sbjct: 235 MGS---------KEGKKLSVYLNGKKLSVKGFKSYLALFDGINPPAAYEK---------- 275

Query: 298 HRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI 357
                E  I+  + + +  S+ N+I T +GG H   +   +   +K      +NK    +
Sbjct: 276 VGDRWEVGISVSDGSFQQISFVNSISTTKGGGHVDHIAEMVVTRLKD-LVKKKNKGGAHV 334

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
               +       ++  +  P+F  QTK  L +  +    E  L + F   + +  +  + 
Sbjct: 335 KPAQIKNHLSIFVNCLVENPKFDSQTKENLTTKKSTFRSEVQLSEKFLKQVDKCGVVDSI 394

Query: 418 LLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           +     +  +      K++   +K  +  +             +    L I EGDSA   
Sbjct: 395 MAYAKFKEGQA----LKRKGGTKKNKLTGITKLDDANHAGTAKSKDCTLIITEGDSAKSL 450

Query: 478 AKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-- 532
           A    +   R    V PL+GK LNV  A   +I  N++I +LV  +G +  + Y EE+  
Sbjct: 451 AVSGLSVVGRDFYGVFPLKGKPLNVRDATHFQIMKNEEISNLVAIMGLKFDTTYTEENIK 510

Query: 533 -LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK-HLFLISPPLFRITQGTKSVY 590
            LRY  ++IMTD D DG+HI  L++ F ++    L++    L     P+ + T+G K   
Sbjct: 511 SLRYGHLMIMTDQDHDGSHIKGLIINFLHKFWPSLLDIPDFLMQFITPIVKCTKGKKFHT 570

Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
                  ++  E      KG   I  +KGLG   +S+ KE   + +   ++  EI+  + 
Sbjct: 571 FFTLPEYEEWKEGTGNDAKG-WTIKYYKGLGTSTSSEAKEYFSNLDIHEIIFNEISDCIP 629

Query: 651 S--LKDTQDSINKLMGTKADERFKFI--QERASFIDDVGT 686
           S        + +K   +K +ER K++   E+ +F++    
Sbjct: 630 STGSALIDMAFSK---SKVEERKKWLNRVEKDTFLNYRDA 666


>gi|297517766|ref|ZP_06936152.1| DNA topoisomerase IV subunit B [Escherichia coli OP50]
          Length = 494

 Score =  360 bits (923), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 191/508 (37%), Positives = 274/508 (53%), Gaps = 19/508 (3%)

Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184
                +E+IL  LHAGGKF N  Y+ SGGLHGVGISVVNALS  + V V R   +++  F
Sbjct: 2   EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAF 61

Query: 185 SRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
             G  +  L+      +   GT + F PD + F D   F  +RL  + ++KA L   V+ 
Sbjct: 62  ENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDSPRFSVSRLTHVLKAKAVLCPGVEI 120

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
            +  +    E       + + +  GL  YL   +     +  + F G           V+
Sbjct: 121 TFKDEINNTE-------QRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTE---AVD 170

Query: 304 WAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAISIISD 360
           WA+ W  E  E    SY N I T +GGTH +GLR  L   ++++ E      R + + ++
Sbjct: 171 WALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAE 230

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D+      +LSV +++P+FAGQTK +L S      V   ++D F  +L QN   A  L E
Sbjct: 231 DIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAE 290

Query: 421 WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
             I  ++ R+R    ++V RK       LPGKLADC+    + TELF+VEGDSAGGSAKQ
Sbjct: 291 MAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQ 348

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           AR+R  QA++PL+GKILN     S+++  +Q++ D+  A+G    S      LRY K+ I
Sbjct: 349 ARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDL-SQLRYGKICI 407

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKI 600
           + DAD DG HIA+LL   F +    L++  H+++  PPL+RI  G +  YA  EE K+ +
Sbjct: 408 LADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGV 467

Query: 601 LEEFKKHGKGKIEISRFKGLGEMLASQL 628
           LE+ K+  KGK  + RFKGLGEM   QL
Sbjct: 468 LEQLKRK-KGKPNVQRFKGLGEMNPMQL 494


>gi|297831176|ref|XP_002883470.1| hypothetical protein ARALYDRAFT_898932 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329310|gb|EFH59729.1| hypothetical protein ARALYDRAFT_898932 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1432

 Score =  360 bits (923), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 144/700 (20%), Positives = 267/700 (38%), Gaps = 71/700 (10%)

Query: 21  EKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGG------------ 68
                  + P   A A ++  + Y   S      LE + +RP  YIG             
Sbjct: 10  SNNANVAKAPR-GAAAGKTIEEMYQKKS-----QLEHILLRPDTYIGSIEKHTQTLWVYE 63

Query: 69  ---------TDEKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIP 117
                    T    L+ +F E++ NA D        + ++V +D     ++V ++G G+P
Sbjct: 64  KDEMVNRSVTYVPGLYKIFDEILVNAADNKQRDPSMDSVQVVIDVEQNLISVCNSGAGVP 123

Query: 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN 177
           VE H +       E+I   L     +D++  + +GG +G G  + N  S E  +  A   
Sbjct: 124 VEIHQE-EGIYVPEMIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGK 182

Query: 178 TIFSQK--FSRGIPLSPLEKKEKV-RNKRGTRITFRPD--PKIFGDKAGFDAARLLKMTQ 232
            +   K  F   +         K  +++  T++TF+PD       +      A + K   
Sbjct: 183 RLKKYKQVFENNMGKKSEPVITKCNKSENWTKVTFKPDLNKFSMTELEDDVVALMSKRVF 242

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             A   G+        K+I  K      + +            K  N+     +     T
Sbjct: 243 DIAGCLGKSVKVELNGKQIPVKSFTDYVDLYL-----------KAANKLRADPDPLPRIT 291

Query: 293 EKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK 352
           EK        E  ++  E   +  S+ N+I T +GGTH   +   +T  I     + +  
Sbjct: 292 EK---VNDRWEVCVSLSEGQFQQVSFVNSIATIKGGTHVDYVTSQITNYI--VGVVNKKN 346

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
           +  ++ + ++       ++  I  P F  QTK  L    +    +  L + F   + +  
Sbjct: 347 KNANVKAHNVKNHLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEDFLKKVGK-- 404

Query: 413 IEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
              + ++E ++  ++ +  +  ++    KT   ++      A+     +    L + EGD
Sbjct: 405 ---SGVVENLLSWADFKKSKDLKKSDGAKTGRVEVEKLEDAAEAGGKNSRLCTLILTEGD 461

Query: 473 SAGG---SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           SA     + +     +   V PLRGK+LNV  A + +I NN++I ++ + LG +   +Y 
Sbjct: 462 SAKPLALAGRTVLGENYYGVFPLRGKLLNVREASTTQITNNKEIENIKKILGLKQNMKYD 521

Query: 530 E-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK-HLFLISPPLF--RITQG 585
               LRY  ++IMTD D DG+HI  LL+ F +     L++    L     P+   +    
Sbjct: 522 NVSSLRYGHMMIMTDQDHDGSHIKGLLINFIHSFWPSLLKVPSFLVEFITPIVKAKNKAK 581

Query: 586 TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645
            K +  +     +   E  K +  G  EI  +KGLG     + KE   +        V  
Sbjct: 582 KKVLSFYSMPEYEDWKESMKGNATG-WEIKYYKGLGTSTTEEAKEYFKNLGLHKKDFV-- 638

Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQER--ASFIDD 683
            +D    +  + + +K    K + R  ++      + +D 
Sbjct: 639 WEDEQDGEAIELAFSK---KKIEARKNWLSNYVPGTHLDQ 675


>gi|67472224|ref|XP_651972.1| DNA topoisomerase II [Entamoeba histolytica HM-1:IMSS]
 gi|40804954|gb|AAR91745.1| topoisomerase II [Entamoeba histolytica]
 gi|56468768|gb|EAL46584.1| DNA topoisomerase II, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 1349

 Score =  359 bits (922), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 145/694 (20%), Positives = 260/694 (37%), Gaps = 83/694 (11%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD----------------------- 70
           +   +   D Y       L   E +  RP  YIG  +                       
Sbjct: 2   SKEKEKLEDIY-----VKLSHKEQILTRPDTYIGSVERNDEQVWIYEEPSEQYSEGRMIQ 56

Query: 71  -----EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGNGFLTVVDNGRGIPVENHPKF 124
                   L  ++ E++ NA D          I+V++     +TV +NG+GIP+E H K 
Sbjct: 57  KVISLAPGLFKIYDEILVNASDNFQRDPKMTTIKVTI-EGNSITVYNNGKGIPIEIHKK- 114

Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184
            +    E+I   L     + +   +++GG +G G  + N  S +  +       I+ Q +
Sbjct: 115 EHIYIPELIFGHLLTSSNYKDDDKKVTGGRNGYGAKLANIFSTKFSIETCDGKKIYKQTW 174

Query: 185 SRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGD--KAGFDAARLLKMTQSKAYLSGRV 241
              +      + E V+  +  T++TF PD K F            L++     A  +   
Sbjct: 175 KNNMSDKEEPEIESVKKVEEYTKVTFTPDYKRFQMKGMEDDARMLLIRRAYDIAGCNPGK 234

Query: 242 KTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
           +   +  K   + +                Y +  + +  ++S +               
Sbjct: 235 RIWINGKKVCFKNF--------------AEYARMYVGDEPIVSEK-----------AGER 269

Query: 302 VEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDD 361
            +  +   +  P   S+ N+I T  GGTH   +   +T+ + +      NK+   I    
Sbjct: 270 WDICVCASKGEPMQISFVNSINTSHGGTHVDYVTGLMTKYLAE-KMKKLNKKGAEIKPFQ 328

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
           +       ++  I  P F  QTK  L +   +   + +L D F    +        +L W
Sbjct: 329 IKNHLFVFVNSLIENPAFDSQTKETLKTQVNKFGSKPSLSDKFFK-ELGKLSVVDDILAW 387

Query: 422 VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
            I++ E  L +   ++  R T I KL    K         +   L + EGDSA   A   
Sbjct: 388 AIKKGEMDLNKSGGKKTARITGIPKLDDANK---AGTKEGNLCTLILTEGDSAKTLAVSG 444

Query: 482 RN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEK 537
            +   R    V PLRGK LN       K++ N +  ++ + +G R    Y   D LRY  
Sbjct: 445 LSVVGRDYYGVFPLRGKPLNAREIAPSKVKENHEFENIAKIMGLRYGKVYTSIDELRYGS 504

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIE-QKHLFLISPPLFRITQGTKSVYAHDEEH 596
           V+IM D D DG+HI  LL+ +F+     L++    L     P+ ++ +G + +       
Sbjct: 505 VMIMADQDFDGSHIKGLLINYFHTFWPSLLKIDNFLVEFITPIVKVKRGKQEISFFTLPQ 564

Query: 597 KQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             +  +   + G+  K EI  +KGLG    S  K    D +   +          S +  
Sbjct: 565 FNEWKDARIQEGQLKKWEIKYYKGLGTSKDSDAKAYFSDLDTHKIKFA--YDGAGSDEVI 622

Query: 656 QDSINKLMGTKADERFKFI--QERASFID-DVGT 686
             + N+    +AD+R +++   +  +++D DV +
Sbjct: 623 DLAFNR---KRADDRKEWLKGYDPNTYLDQDVDS 653


>gi|154340639|ref|XP_001566276.1| DNA topoisomerase ii [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134063595|emb|CAM39778.1| DNA topoisomerase ii [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 1501

 Score =  359 bits (922), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 138/682 (20%), Positives = 253/682 (37%), Gaps = 74/682 (10%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGG-----------------------TDEKAL 74
           ++    Y           E +  RP MYIG                        T    L
Sbjct: 3   KTVEQIYQKK-----TQHEHILTRPDMYIGTIEPVTDDIWVYDDAENIMKQRKCTWTPGL 57

Query: 75  HHLFSEVIDNAMDEVIAGY--ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
           + +F E++ NA D  +       +I V +  + ++ V +NG GIP++ H +  +    E+
Sbjct: 58  YKIFDEILVNAADNKVRDPLGQTVIRVWMTED-YVRVYNNGEGIPIQRHREH-DLWVPEM 115

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTV--ARQNTIFSQKFSRGIPL 190
           I   L     +D+   +++GG +G G  + N  S +  V    +R    F  K++  +  
Sbjct: 116 IFGHLLTSSNYDDEEAKVTGGRNGFGAKLTNVFSKQFEVETVHSRSRKKFYMKWTNNMLQ 175

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
                     +   T +TF PD   F     F    LL M +    ++G        DK 
Sbjct: 176 HDDPIIVPCESADYTMVTFYPDFARFHV-DKFSEDILLMMKRRVYDVAG------CTDKT 228

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
           +             FP  +  Y     E ++   S                 E  +    
Sbjct: 229 LKCFLNDERIACTTFPEYVDLYPTMGEERKAASYSR-----------ANDRWELCVRVSN 277

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
             P+  S+ N+I T  GGTH   +   +   + + A+  +      + S  +       +
Sbjct: 278 IGPQQVSFVNSIATTRGGTHVKYIMDQIVTKVVEQAKKKK---KTDVKSHMIRPHIFLFV 334

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           +  I  P F  QTK  L ++ ++      L +    Y++ + I    +     + ++E  
Sbjct: 335 NCLIDNPSFDSQTKETLNTVKSKFGSTCDLPNSIVDYIMNSGIVERSVEMANSKIAKEMA 394

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQ 487
            + K  +  +   I KL    +         H   L + EGDSA          ++R   
Sbjct: 395 SKIKSSDRKQIMGIPKLDDANE---AGGKHGHRCTLILTEGDSAKTLCTAGLAVKDRDYF 451

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADV 546
            V PLRGK LNV  A  +K+   ++I  +++ +G   R +Y   D LRY  ++IM+D D 
Sbjct: 452 GVFPLRGKPLNVREASLKKLAACEEIQCVMKIMGLDIRQKYENTDGLRYGHLMIMSDQDH 511

Query: 547 DGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRIT-QGT----KSVYAHDEEHKQKI 600
           DG+HI  LL+ F +    +L+     L     P+ +   +G     K++         + 
Sbjct: 512 DGSHIKGLLINFIHCFWPNLLRVPGFLQQFITPIVKARPKGRGGAGKAISFFSMPDYFEW 571

Query: 601 LEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660
            +    +     +I  +KGLG   A + +E   + ++  L  VE         +    + 
Sbjct: 572 KKAIGDN-LSNYQIRYYKGLGTSGAEEGREYFENIDRHRLSFVE-----QDQSEEDRIVM 625

Query: 661 KLMGTKADERFKFIQERASFID 682
                + ++R ++I    + ++
Sbjct: 626 AFGKDRVEDRKEWITNFKTNVN 647


>gi|323455286|gb|EGB11155.1| hypothetical protein AURANDRAFT_22331 [Aureococcus anophagefferens]
          Length = 1228

 Score =  359 bits (921), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 143/728 (19%), Positives = 258/728 (35%), Gaps = 102/728 (14%)

Query: 16  SQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMY---------- 65
           ++ + +    +     +P   +++  + Y          LE + +RP  Y          
Sbjct: 2   ARPAPQMETTNAAPKKAPGKKSKTIEETYQKK-----TQLEHILLRPDTYSAPAAPETAR 56

Query: 66  IGGT---------------------------DEKALHHLFSEVIDNAMDEVIAGY-ANLI 97
           +G                                 L  +F E++ NA D          I
Sbjct: 57  LGSIEMSTQPMWVLNPDTKRIVRRNVTYARRGVPGLFKIFDEIMVNAADNKQRDPSMTTI 116

Query: 98  EVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           +V +D     ++V ++G+GIPVE H +       E+I   L  G  FD++  + +GG +G
Sbjct: 117 KVDIDVAANSISVGNDGKGIPVEMHGEH-GCYVPELIFGHLLTGSNFDDNEKKTTGGRNG 175

Query: 157 VGISVVNALSDELHVTVARQN--TIFSQKFSRGI--PLSPLEKKEKVRNKRGTRITFRPD 212
            G  + N  S +  V  A        SQ +   +     P +       K  TR+TF PD
Sbjct: 176 YGAKLANIFSKKFTVETADSKSGRKLSQTWEHNMSGTQGPAKISPHKNKKDFTRVTFEPD 235

Query: 213 PKIFGDKA--GFDAARLLKMTQSKA----YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
              F          A L K     A         +K   + ++   + +           
Sbjct: 236 LARFKMDRLDDDIVALLSKRAYDVAASASCHGSSLKVELNGERVPVKSF----------- 284

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDE 326
                Y+          + E            R TV  A +  +   +  S+ N+I T +
Sbjct: 285 ---AQYVALHDGLEPPAALER--------VDDRWTVGVAPS--DGTFQHLSFVNSICTSK 331

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           GG+H + +   +T      A + +  +   +    +       +   I  P F  QTK  
Sbjct: 332 GGSHVNYVADQITAK--LAAAVKKKNKGQEVKPAFIKAHLCVYVDAMIVNPAFDSQTKET 389

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L + +     +  L D F   + ++ +    L     ++      + K++  ++KT +  
Sbjct: 390 LTTKEKAFGSKCVLPDKFLKAIEKSGVVDRVLAWTKFKQ----DEQLKRKGGSKKTRLTG 445

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAG 503
           +                  L + EGDSA   A        R    V PL+GK LNV  A 
Sbjct: 446 ITKLDDANAAGGARGKDCTLILTEGDSAKALAVSGLGVVGRDLYGVFPLKGKPLNVREAS 505

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFY 560
              I  N+++ ++V+ LG R    Y E +   LRY  ++IMTD D DG+HI  LL+   +
Sbjct: 506 HAAIMKNEEVQNVVKILGLRFGVTYDEANLKTLRYGHLMIMTDQDHDGSHIKGLLINCLH 565

Query: 561 QEMYDLIEQ-KHLFLISPPLFRIT---QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616
                L++    L     P+ + T   +   +         +   E   + G     I  
Sbjct: 566 HFWPSLLQIPGFLRCFITPIVKATPAAKSKPAEVFFTLPEYEAWKE--ARGGLHGHAIKY 623

Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ- 675
           +KGLG   A + KE   + +   L    +++          + +K    + ++R  +++ 
Sbjct: 624 YKGLGTSTAKEAKEYFGELDTHQLDYATLDESAREGDLIDMAFSK---KRVEDRKTWLRN 680

Query: 676 -ERASFID 682
            E  +F+D
Sbjct: 681 LEPGTFVD 688


>gi|159900885|ref|YP_001547132.1| XRE family transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159893924|gb|ABX07004.1| transcriptional regulator, XRE family [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 1188

 Score =  359 bits (921), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 196/512 (38%), Positives = 288/512 (56%), Gaps = 17/512 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            A  S    YDA+ I++L GLE VR   GMY+GG D  ALHHL  EV+DN++DE +AG+ 
Sbjct: 1   MATNSNQSTYDAAQIQMLRGLEAVRENMGMYLGGQDTSALHHLVYEVVDNSVDEALAGFC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS-TYEISGG 153
           + I V +  +G + VVDNGRGIP + HP    +S LEI+LT LHAGGKF  S  Y++SGG
Sbjct: 61  DTIIVEMRTDGSIAVVDNGRGIPTDIHP-VEGRSALEIVLTELHAGGKFKGSQGYKVSGG 119

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+S VNA+S+ L   V R   +++Q F  G+P +P++         GT I F+PD 
Sbjct: 120 LHGVGVSAVNAVSEFLRAEVKRDGKLWAQDFRLGMPQAPVKAVGDAEG-TGTTIIFKPDA 178

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           ++F     F+   L    +  AYL+  ++            Y    +  +YF GG+ +++
Sbjct: 179 QLFTT-VDFNYRTLANRLRDMAYLNKSLRFKLVD-------YNNDREVTYYFDGGIVSFV 230

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHES 332
           +     +  + ++ F  +   +      VE A+ +  + N  + ++ N I   +GGTH +
Sbjct: 231 RHLTREKGPVLAQPFYVEKPYENV---NVEIAMQYTGDFNENLLAFTNNIANPDGGTHVT 287

Query: 333 GLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           G R ALTR I  Y       K   ++  +D+      I+S+ +  P+F  QTK+KL + +
Sbjct: 288 GFRAALTRTINAYGRNKGLLKEGDALSGEDVREGLTAIISIKLFRPQFESQTKSKLATPE 347

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
           A+  VE  L +    +L +NP EA +++E  +  S  R   RK R+ V RK A+    LP
Sbjct: 348 AKTAVETVLNEALSAFLDENPNEARRIIEKSLLASRARDAARKARDLVQRKGALEGFALP 407

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADCS       E+FIVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  +  +K+  N
Sbjct: 408 GKLADCSDKEPAHCEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRLDKMLAN 467

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
            ++  L+ ALG      +    LRY +++IM+
Sbjct: 468 NEVRALITALGTGIGETFDISRLRYHRILIMS 499



 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 59/199 (29%), Positives = 97/199 (48%), Gaps = 11/199 (5%)

Query: 487  QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADV 546
            QA  PL   ++ +     E++    + +    ++            L        TDADV
Sbjct: 1000 QAFTPLSDDMVGLEVLAVEELAPTGEFVYDF-SVEEDENFLCGTGGLYAHN----TDADV 1054

Query: 547  DGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKK 606
            DG+HI +LLLTFF++ M DLI   HL++  PPLFR+  G    Y +DE  + + +     
Sbjct: 1055 DGSHIRTLLLTFFFRHMRDLITNGHLYVAQPPLFRVQHGKAYKYVYDEATRDEYIRSLPA 1114

Query: 607  HGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK 666
                K+ + RFKGLGEM   QL +T ++   R +L+V +   +    +  ++ + LMG  
Sbjct: 1115 --GTKVTVQRFKGLGEMNPDQLWDTTLNPGNRMILQVTVEDAM----EADETFSMLMGEI 1168

Query: 667  ADERFKFIQERASFIDDVG 685
               R +FIQ  A+ + ++ 
Sbjct: 1169 VLPRKRFIQTHAADVKNLD 1187


>gi|289619683|emb|CBI53966.1| putative TOP2 protein [Sordaria macrospora]
          Length = 1915

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 150/741 (20%), Positives = 283/741 (38%), Gaps = 85/741 (11%)

Query: 2   TDDSIDLFSTLPPQSQG-----------------SSEKLKKSGEIPDSPAFANQSASDNY 44
           +D    +    PP ++                   ++ ++    +P     A ++A++ Y
Sbjct: 71  SDKDDGILDNTPPNAKKQKKAPVKKAAGKPLAEIENDSMQIDSVVPSKKTGAAKTATEMY 130

Query: 45  DASSIRILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEV 81
                + L  LE +  RP  YIG  +                          L+ +F E+
Sbjct: 131 -----QKLTQLEHILKRPDTYIGSVERSEQKMWVFNKATGLMENRQISFVPGLYKIFDEI 185

Query: 82  IDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139
           + NA D          ++VS++   G ++V +NG+GIPVE H         E+I   L A
Sbjct: 186 LVNAADNSQRDSSMTFLKVSINRESGEISVENNGKGIPVEIHG-TEKCYVPELIFGHLLA 244

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKE 197
           G  FD++  +  GG +G G  + N  S E  +          + Q ++  +      K  
Sbjct: 245 GSNFDDNEKKTVGGRNGYGAKLTNIFSREFILECQDSVNGKRYKQTWTDNMSKMSTPKIT 304

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAA---RLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
             +     RITFRPD   FG   G D      L +     A     +K   + +      
Sbjct: 305 SNKAADFVRITFRPDFSKFGMADGIDDDLEALLYRRVYDMAGTVSGIKVWLNGE------ 358

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE 314
             +    + Y     K   + + E          T   E++ +     E      + + +
Sbjct: 359 -HLKLNFKTYCGLYAKAIAKERDEVADGEDVTPATVIFEQQRSEGKLWEVGFTVSDGSFQ 417

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFI 374
             S+ N I T  GG+H + +   +   + K     +  +   + + ++       ++  I
Sbjct: 418 QVSFVNNIATTSGGSHVNYIADQIIEVLMK-ELQRKKGKGHGLKTANVKNQFFIFINCLI 476

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
             P F+ QTK +L +  A+   +  L D F   +       ++ ++ ++  ++++  +  
Sbjct: 477 DNPAFSSQTKEQLTTKPARFGSKCQLGDQFLKKVR-----QSEAIDNLLSFADKKRDKDL 531

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR---NRSNQAVLP 491
            +    K          +        +    L + EGDSA G A   R   + +   V P
Sbjct: 532 AKNDGSKRKRISNDKLIEANYAGGKYSQECTLILTEGDSARGLAVAGRAILDPNRIGVFP 591

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAH 550
           LRGK+LNV  A +++I  N+++ ++ + LG +    Y +   LRY  ++IM D D+DG+H
Sbjct: 592 LRGKMLNVRDASADQILKNKEVENIKKFLGLKHGKVYTDTKDLRYGHLMIMADQDLDGSH 651

Query: 551 IASLLLTFFYQEMYDLIEQKHLF-LISPPLFRITQG------TKSVYAHDEEHKQKILEE 603
           I  LL+ FF  +   L+   + F     P+ ++ QG       K          ++  E 
Sbjct: 652 IKGLLINFFECQFPSLLRIPNFFQEFITPVVKVWQGPNPRKPQKLQGFFTLPQYEEWKES 711

Query: 604 FKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLM 663
             K+   + +    KGLG       +    +  K  L   ++     S +  + + +K  
Sbjct: 712 -HKNELRRWKYKYLKGLGSSTTDDAQIYFTNLTKH-LKEFDVMTREES-EMFELAFSK-- 766

Query: 664 GTKADERFKFIQ--ERASFID 682
             KAD R +++   E  +++D
Sbjct: 767 -KKADARKEWLAKCEPGTYLD 786


>gi|322493315|emb|CBZ28601.1| DNA topoisomerase ii [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 1497

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 135/682 (19%), Positives = 251/682 (36%), Gaps = 74/682 (10%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGG-----------------------TDEKAL 74
           ++    Y           + +  RP MYIG                        T    L
Sbjct: 3   KTVEQIYQKK-----TQHDHILTRPDMYIGTIEPVTDDIWVYDDAENIMKQHKCTWTPGL 57

Query: 75  HHLFSEVIDNAMDEVIAGY--ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
           + +F E++ NA D  +       +I V +    ++ V +NG GIP++ H +  +    E+
Sbjct: 58  YKIFDEILVNAADNKVRDPIGQTVIRVWMTE-NYVRVYNNGEGIPIQKHREH-DLWVPEM 115

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTV--ARQNTIFSQKFSRGIPL 190
           I   L     +D+   +++GG +G G  + N  S +  V    +R    F  K++  +  
Sbjct: 116 IFGHLLTSSNYDDEEAKVTGGRNGFGAKLTNVFSKQFEVETVHSRSRKKFYMKWTNNMLQ 175

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
                     +   T +TF PD   F     F    LL M +    ++G        DK 
Sbjct: 176 HDDPIIVSCDSADYTMVTFYPDFARFHV-DKFSEDMLLMMKRRVYDVAG------CTDKT 228

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
           +             FP  +  Y     E ++   S                 E  +    
Sbjct: 229 LKCFLNDERIACTTFPEYVDLYPTMGEERKAASYSR-----------VNDRWEVCVRVSN 277

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
             P+  S+ N+I T  GGTH   +   +   + + A+  +      +    +       +
Sbjct: 278 IGPQQVSFVNSIATTRGGTHVKYIMDQIISKVVEQAKKKK---KTDVKPHMIRPHIFLFV 334

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           +  I  P F  QTK  L ++ ++      L +    Y++ + I    +     + ++E  
Sbjct: 335 NCLIENPGFDSQTKETLNTVKSKFGSTCDLPNSIIDYIMSSGIVERSVEMANSKIAKEMA 394

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQ 487
            + +  +  +   I KL    +        +H   L + EGDSA          ++R   
Sbjct: 395 SKMRSSDRKQIMGIPKLDDANE---AGGKYSHRCTLILTEGDSAKTLCTAGLAVKDRDYF 451

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADV 546
            V PLRGK LNV  A  +K+   ++I  +++ +G   R +Y   D LRY  ++IM+D D 
Sbjct: 452 GVFPLRGKPLNVREASLKKLAACEEIQCVMKIMGLDIRQKYENTDGLRYGHLMIMSDQDH 511

Query: 547 DGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRIT-QGT----KSVYAHDEEHKQKI 600
           DG+HI  LL+ F +     L+     L     P+ +   +G     K++         + 
Sbjct: 512 DGSHIKGLLINFIHCFWPSLLRVPGFLQEFITPIVKARPKGRGGAGKAISFFSMPDYFEW 571

Query: 601 LEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660
            +    +     +I  +KGLG   A + +E   + ++  L  VE  +           + 
Sbjct: 572 KKAIGDN-LSNYQIRYYKGLGTSGAEEGREYFENIDRHRLSFVEQEQSEE-----DRIVM 625

Query: 661 KLMGTKADERFKFIQERASFID 682
                + ++R ++I    + ++
Sbjct: 626 AFGKDRVEDRKEWITNFKTNVN 647


>gi|156088413|ref|XP_001611613.1| DNA topoisomerase II [Babesia bovis T2Bo]
 gi|154798867|gb|EDO08045.1| DNA topoisomerase II, putative [Babesia bovis]
          Length = 1437

 Score =  359 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 144/696 (20%), Positives = 266/696 (38%), Gaps = 90/696 (12%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD----------------------- 70
           A   ++    Y   S      LE + +RP  YIG T+                       
Sbjct: 2   AAKQKTIEQRYQKKS-----QLEHILLRPDTYIGNTEMLTQQMWVYNQEAKRMLYEPVTF 56

Query: 71  EKALHHLFSEVIDNAMDEVIA-------GYANLIEVSLDGN-GFLTVVDNGRGIPVENHP 122
              L+ +F E++ NA D                I+V+ +   G +TV ++G  IPVE H 
Sbjct: 57  IPGLYKIFDEILVNAADVHARQQSDPSLTRMTCIKVNFNATTGAITVFNDGEPIPVEIHK 116

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQ--NTIF 180
           +  N    E+I   L     +D+    I+GG +G G  + N  S    VT A    +  F
Sbjct: 117 EH-NVYVPEMIFGELLTSDNYDDEDGRITGGRNGFGAKLTNIFSKSFSVTCADSKRHKQF 175

Query: 181 SQKFSRGIP-LSPLEKKEKVRNKRGTRITFRPDPKIF--GDKAGFDAARLLKMTQSKAYL 237
           + K+   +  ++   K      K   ++TF PD + F            LLK     A  
Sbjct: 176 AMKWESNMTRVASPAKVGSYHGKDFVKVTFIPDYERFGIPTMDEGTLKVLLKRVYDVAGT 235

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +G  +  W+ ++                  G+  + Q          + +          
Sbjct: 236 TGL-RVYWNDERL-----------------GISDFKQYVGLYFEDDPTVVKVY----DKA 273

Query: 298 HRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI 357
           HR  V  +        +  S+ N I T +GG+H   +   L   +      ++NK  + +
Sbjct: 274 HRWEVMVSATDGS-GFQQVSFVNNITTLKGGSHVQHVLEPLVTALTN-KVKSKNKDGVEL 331

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
               +       ++  I  P F  QTK  L +  A+   +  +       ++++ +    
Sbjct: 332 KPYQIKNYIFLFVNCQIVNPTFDSQTKETLTTKPAKFGSKYIMNPKAVAQILKSTLTER- 390

Query: 418 LLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ---NIAHGTELFIVEGDSA 474
               ++  ++ RL    ++++    A+ +L    KL D +      A    L + EGDSA
Sbjct: 391 ----ILSFAQGRLNIELKKKMKVTKAVNRLTGIPKLEDANNAGTRHARNCTLILTEGDSA 446

Query: 475 GGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR-- 529
             S     +   R N  V PL+GK+LNV  A  +++  N +I ++++ +G     + +  
Sbjct: 447 KTSCLAGLSVVGRDNYGVFPLKGKLLNVRDASYKQLVQNAEIQNILKIMGLDVSKKEQTT 506

Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE-QKHLFLISPPLFRITQGTKS 588
            + LRY  ++IMTD D DG+HI  LL+   +     +I+ +  +     P+ + T+G   
Sbjct: 507 PDGLRYGSIMIMTDQDYDGSHIKGLLINLLHYFWPKMIQCRGFIREFVTPIIKATKGDSV 566

Query: 589 VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648
           +     +   + ++          +I  +KGLG     + KE  ++  +  +    I +D
Sbjct: 567 LSFFTVQDYVRWVQS---TNVAGWKIKYYKGLGTSTDKEFKEYFVNIQQHLIDF--IYED 621

Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQ--ERASFID 682
                    + NK    + D+R  ++Q  E  + +D
Sbjct: 622 NADDDSIDLAFNK---KRVDDRKLWMQSYEHGTTVD 654


>gi|307564794|ref|ZP_07627322.1| DNA topoisomerase IV subunit B [Prevotella amnii CRIS 21A-A]
 gi|307346516|gb|EFN91825.1| DNA topoisomerase IV subunit B [Prevotella amnii CRIS 21A-A]
          Length = 646

 Score =  359 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 188/687 (27%), Positives = 293/687 (42%), Gaps = 102/687 (14%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTD-----EKALHHLFSEVIDNAMDEVIAGYANLI 97
            Y   +IR L  +E VR RPGMYIG        E  ++ L  EVIDN++DE      N I
Sbjct: 10  QYTDDNIRHLSDMEHVRTRPGMYIGRLGDGKLPEDGIYVLLKEVIDNSIDEFKMEAGNRI 69

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           E+ ++ N  +TV D GRGIP     +          ++ L+ GGK+D+  ++ S GL+GV
Sbjct: 70  EIDIEDNLRVTVRDYGRGIPQGKLIE---------AVSMLNTGGKYDSKAFKKSVGLNGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+  VNALS +  V   R   +    F +G       K  K  ++ GT I F PD  +F 
Sbjct: 121 GVKAVNALSSKFEVKSFRDGKVRHLCFEKGCLKDD--KTSKSNDENGTFIYFEPDNTLFK 178

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    +  M ++  YL+  +   ++  +                  GLK  L   +
Sbjct: 179 NY-KFLDEIVETMLRNYTYLNTGLTIMYNGRRI-------------LSRHGLKDLLTDNM 224

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
               L       G+          +E A     +   E  S+ N   T +GGTH+S  + 
Sbjct: 225 TVDPLYPIVHMKGE---------DIEIAFTHTNQYGEEYYSFVNGQHTTQGGTHQSAFKE 275

Query: 337 ALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS------- 389
            + + IK+Y               D+    V  +++ + EP F  QTK KL S       
Sbjct: 276 HIAKTIKEYYG--------KYEYIDIRNGLVAAIAINVEEPIFESQTKVKLGSTLMEPNG 327

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER-SEERLRRRKQREVNRKTAIRKLR 448
               + + + ++   D+YL  +  +   +LE  I+    ER       ++ R+ A +   
Sbjct: 328 DTINKYIGDFIKLNVDNYLHIHKEDCADILENKIKETERERKAMAGVTKLARERAKKANL 387

Query: 449 LPGKLADCSQNIAHGT-------ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
              KL DC  + +           +FI EGDSA GS  ++R+ + QAV  LRGK LN   
Sbjct: 388 HNKKLRDCRIHFSDIKNDRKEESSIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSFG 447

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
              + +  N++   L  AL            LRY K+I+ TDADVDG HI  L++TFF Q
Sbjct: 448 LTKKVVYENEEFNLLQAALDIEEGLDT----LRYNKIIVATDADVDGMHIRLLIITFFLQ 503

Query: 562 EMYDLIEQKHLFLISPPLFRIT------QGTKSV-------------------YAHDEEH 596
              +LI++ H++++  PLFRI       +  K++                   Y + EE 
Sbjct: 504 FFPELIKKGHVYVLQTPLFRIRNRRTKIKNKKTIIEADQNRVKGEKKNDFITRYCYSEEE 563

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
           + + + +         EI+RFKGLGE+   +     +    R L +V ++K        Q
Sbjct: 564 RLEAINDLAPE----PEITRFKGLGEISPDEF-IHFIGPEMR-LEQVTLHK----TDQVQ 613

Query: 657 DSINKLMGTKADERFKFIQERASFIDD 683
             +   MG    ER  FI +     +D
Sbjct: 614 KLLEYYMGKNTMERQNFIIDNLVVEED 640


>gi|118420998|dbj|BAF37224.1| DNA gyrase subunit B [Marinobacter hydrocarbonoclasticus]
          Length = 475

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 187/487 (38%), Positives = 280/487 (57%), Gaps = 19/487 (3%)

Query: 66  IGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKF 124
           IG TD+   LHH+  E++DN++DE +AGY + I + +  +  +TV DNGRGIPV+ H + 
Sbjct: 1   IGDTDDGTGLHHMVFELVDNSIDEALAGYCSEIGIIIHPDESITVKDNGRGIPVDLHEE- 59

Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184
              S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS  L +T+ R   ++ Q +
Sbjct: 60  EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSSSLTLTIRRDGKVYEQSY 119

Query: 185 SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244
           + G+P +PL +  +  +  GT++ F P P+ F     F    L K  +  A+L+  V+  
Sbjct: 120 THGVPNAPLGEVGET-DASGTKVHFIPSPETF-THIQFHYDILAKRLRELAFLNSGVRIR 177

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
            + ++   E       E F + GGL+ +++    N++ I+      +  + G     VE 
Sbjct: 178 LTDERSGKE-------EIFEYEGGLRAFVEHLNTNKTAINRVFHFNREREDGI---AVEV 227

Query: 305 AIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDD 361
           A+ W +     I  + N I   +GGTH +G R ALTR +  Y +      K  ++   DD
Sbjct: 228 AMQWNDAFQENIYCFTNNIPQRDGGTHLAGFRAALTRSLNNYIDHEGLGKKAKVATSGDD 287

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
                  I+SV + +P+F+ QTK KLVS + +  VE  L   F  YL + P EA +++  
Sbjct: 288 AREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQELYQSFAEYLQEQPNEAKQIVNK 347

Query: 422 VI-ERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
           +I         R+ +    RK A+    LPGKLADC +     +ELFIVEGDSAGGSAKQ
Sbjct: 348 MIEAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQ 407

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            R+R  QA+LPL+GKILNV  A  +K+ ++ ++  L+ ALGC   R ++  + LRY  +I
Sbjct: 408 GRDRKTQAILPLKGKILNVEKARFDKMLSSAEVGTLITALGCGIGREEFNPDKLRYHSII 467

Query: 540 IMTDADV 546
           IMTDADV
Sbjct: 468 IMTDADV 474


>gi|157871926|ref|XP_001684512.1| DNA topoisomerase ii [Leishmania major]
 gi|68127581|emb|CAJ05684.1| DNA topoisomerase ii [Leishmania major strain Friedlin]
          Length = 1497

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 135/682 (19%), Positives = 249/682 (36%), Gaps = 74/682 (10%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGG-----------------------TDEKAL 74
           ++    Y           + +  RP MYIG                        T    L
Sbjct: 3   KTVEQIYQKK-----TQHDHILTRPDMYIGTLEPVTDDIWVYDDAENSMKQRKCTWTPGL 57

Query: 75  HHLFSEVIDNAMDEVIAGY--ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
           + +F E++ NA D  +       +I V +    ++ V +NG GIP++ H +  +    E+
Sbjct: 58  YKIFDEILVNAADNKVRDPIGQTVIRVWMTE-SYVRVYNNGEGIPIQKHREH-DLWVPEM 115

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTV--ARQNTIFSQKFSRGIPL 190
           I   L     +D+   +++GG +G G  + N  S +  V    +R    F  K++  +  
Sbjct: 116 IFGHLLTSSNYDDEEAKVTGGRNGFGAKLTNVFSKQFEVETVHSRSRKKFYMKWTNNMLQ 175

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
                     +   T +TF PD  +F     F    LL M +               DK 
Sbjct: 176 HDDPVIVPCDSADYTMVTFYPDFALFHV-DKFTEDMLLMMKRRVYD------IAGCTDKT 228

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
           +             FP  +  Y     E ++   S                 E  +    
Sbjct: 229 LKCFLNDERIACTTFPEYVDLYPTMGEERKAASYSR-----------VNDRWEVCVRVSN 277

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
             P+  S+ N+I T  GGTH   +   +T  + + A+  +      +    +       +
Sbjct: 278 IGPQQVSFVNSIATTRGGTHVKYIMDQITSKVMEQAKKKK---KTDVKPHMIRPHIFLFV 334

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           +  I  P F  QTK  L ++ ++      L +    Y++ + I    +     + + E  
Sbjct: 335 NCLIENPGFDSQTKETLNTVKSKFGSTCDLPNSIVDYIMSSGIVERSVEMANSKIAREMA 394

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQ 487
            + +  +  +   I KL    +        +H   L + EGDSA          ++R   
Sbjct: 395 SKMRSSDRKQIMGIPKLDDANE---AGGKHSHRCTLILTEGDSAKTLCTAGLAVKDRDYF 451

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADV 546
            V PLRGK LNV  A  +K+   ++I  +++ +G   R  Y   D LRY  ++IM+D D 
Sbjct: 452 GVFPLRGKPLNVREASLKKLAACEEIQCVMKIMGLDIRQTYENSDGLRYGHLMIMSDQDH 511

Query: 547 DGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRIT-QGT----KSVYAHDEEHKQKI 600
           DG+HI  LL+ F +    +L+     L     P+ +   +G     K++         + 
Sbjct: 512 DGSHIKGLLINFIHCFWPNLLRVPGFLQQFITPIVKARPKGRGGAGKAISFFSMPDYFEW 571

Query: 601 LEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660
            +    +     +I  +KGLG   A + +E   + ++  L  VE  +           + 
Sbjct: 572 KKAIGDN-LSNYQIRYYKGLGTSGAEEGREYFENIDRHRLNFVEQEQSEE-----DRIVM 625

Query: 661 KLMGTKADERFKFIQERASFID 682
                + ++R ++I    + ++
Sbjct: 626 AFGKDRVEDRKEWITNFKTNVN 647


>gi|324039430|dbj|BAJ78468.1| DNA gyrase subunit B [Alcanivorax sp. ST-TA]
          Length = 476

 Score =  357 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 193/488 (39%), Positives = 283/488 (57%), Gaps = 20/488 (4%)

Query: 66  IGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKF 124
           IG TD+   LHH+  EV+DN++DE +AG+ + I+V +  +  +++ DNGRGIP E H + 
Sbjct: 1   IGDTDDGTGLHHMVFEVVDNSIDEALAGFCSEIKVVIHPDESMSIQDNGRGIPTEMHEE- 59

Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184
              S  E+I+T LHAGGKFD++TY++SGGLHGVG+SVVNALS+EL +T+ R   +  Q +
Sbjct: 60  EGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIY 119

Query: 185 SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244
           + G+P  PLE      +  GT + FRP P+ F +   F    L K  +  ++L+  V+  
Sbjct: 120 NHGVPAKPLEVVG-TTDSSGTAVHFRPSPETFSN-IKFHYDILAKRLRELSFLNSGVRIH 177

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVE 303
              ++   E       + F + GGL  ++     N++ ++       + E+ G     VE
Sbjct: 178 LMDERSGDE-------DVFEYEGGLSAFVSYLNTNKTPLNQVFHFNYEREEDGI---AVE 227

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISD 360
            A+ W +     I  + N I   +GGTH +G R ALTR +  Y +      K   S   D
Sbjct: 228 VAMQWNDSYQENIFCFTNNIPQRDGGTHLAGFRAALTRTLNSYMDKEGFLKKEKASPSGD 287

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D       ++SV + +P+F+ QTK KLVS + +  VE  + D F  YL++NP EA  +++
Sbjct: 288 DAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGDLFQDYLLENPGEARSIVQ 347

Query: 421 WVI-ERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
            +I         R+ +    RK A+    LPGKLADC Q     +EL+IVEGDSAGGSAK
Sbjct: 348 KIIDAARARDAARKAREMTRRKGALDIAGLPGKLADCQQKDPALSELYIVEGDSAGGSAK 407

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
           Q R+R NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  E LRY ++
Sbjct: 408 QGRDRKNQAILPLKGKILNVEKARFDKMLSSQEVGTLITALGCGIGRDEYNIEKLRYHRI 467

Query: 539 IIMTDADV 546
           IIMTDADV
Sbjct: 468 IIMTDADV 475


>gi|288801769|ref|ZP_06407211.1| DNA gyrase, B subunit [Prevotella melaninogenica D18]
 gi|288335811|gb|EFC74244.1| DNA gyrase, B subunit [Prevotella melaninogenica D18]
          Length = 624

 Score =  357 bits (915), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 180/676 (26%), Positives = 287/676 (42%), Gaps = 102/676 (15%)

Query: 55  LEPVRMRPGMYIGGTD-----EKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTV 109
           +E VR RPGMYIG        E  ++ L  EVIDN++DE      + IE+ ++ N  ++V
Sbjct: 1   MEHVRTRPGMYIGRLGDGKLPEDGIYVLLKEVIDNSIDEFKMNAGDRIEIDVEDNLRVSV 60

Query: 110 VDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDEL 169
            D GRGIP            L   ++ L+ GGK+D+  ++ S GL+GVG+  VNALS   
Sbjct: 61  RDYGRGIPQGK---------LVEAVSVLNTGGKYDSKAFKKSVGLNGVGVKAVNALSSHF 111

Query: 170 HVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLK 229
            V   R   +    F +G   S   K +K  ++ GT I F PD  +F +   F    + +
Sbjct: 112 EVKSFRDGKVRELSFEKGNLQSD--KTKKSADENGTYIYFEPDATLFKNY-SFHDDIVEE 168

Query: 230 MTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFT 289
           M ++  YL+  +   ++  +                  GLK  L   +    L       
Sbjct: 169 MLRNYTYLNTGLTIMYNGRRI-------------LSRHGLKDLLTDNMTVDPLYPIVHMK 215

Query: 290 GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
           G+          +E A     +   E  S+ N   T +GGTH++  +  + + IK++   
Sbjct: 216 GE---------DIEIAFTHTNQYGEEYYSFVNGQHTTQGGTHQTAFKEHIAKTIKEFFG- 265

Query: 349 TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR-------TVENALR 401
                       D+    V  ++V + EP F  QTK KL S             V + ++
Sbjct: 266 -------KYEYGDIRNGLVAAIAVNVEEPVFESQTKIKLGSTQMSPDGESINKYVGDFIK 318

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR--------LPGKL 453
              D+YL  +  + T +LE  I+ +E   +         +   +K               
Sbjct: 319 TNVDNYLHIHKEDFTDILENKIKETERERKAMAGVTKLARERAKKANLHNRKLRDCRVHY 378

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
            D   +    + +FI EGDSA GS  ++R+ + QAV  LRGK LN      + +  N++ 
Sbjct: 379 CDVKNDRKEESSIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNCFGLTKKVVYENEEF 438

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
             L  AL          + LRY KVI+ TDADVDG HI  L++TFF Q   +LI++ H++
Sbjct: 439 NLLQAALDIEDGL----DSLRYNKVIVATDADVDGMHIRLLIITFFLQFFPELIKKGHVY 494

Query: 574 LISPPLFRIT------QGTKSV-------------------YAHDEEHKQKILEEFKKHG 608
           ++  PLFR+       +  + +                   Y + EE +   + E     
Sbjct: 495 VLQTPLFRVRNRRTKIKNKEVIAEADARRVKGEKKNDFITRYCYSEEERVAAINELGPD- 553

Query: 609 KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKAD 668
               EI+RFKGLGE+   +     +  + R L +V ++K+    K     +   MG    
Sbjct: 554 ---PEITRFKGLGEISPDEFAH-FIGPDMR-LEQVTLHKNDQVAK----LLEYYMGKNTM 604

Query: 669 ERFKFIQERASFIDDV 684
           ER  FI +     +D+
Sbjct: 605 ERQNFIIDNLVIEEDL 620


>gi|322500572|emb|CBZ35649.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1498

 Score =  356 bits (914), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 135/682 (19%), Positives = 252/682 (36%), Gaps = 74/682 (10%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGG-----------------------TDEKAL 74
           ++    Y           + +  RP MYIG                        T    L
Sbjct: 3   KTVEQIYQKK-----TQHDHILTRPDMYIGTIEPVTDDIWVYDDAENTMKQRKCTWTPGL 57

Query: 75  HHLFSEVIDNAMDEVIAGY--ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
           + +F E++ NA D  +       +I V +    ++ V +NG GIP++ H +  +    E+
Sbjct: 58  YKIFDEILVNAADNKVRDPIGQTVIRVWMTE-NYVRVYNNGEGIPIQKHREH-DLWVPEM 115

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTV--ARQNTIFSQKFSRGIPL 190
           I   L     +D+   +++GG +G G  + N  S +  V    +R    F  K++  +  
Sbjct: 116 IFGHLLTSSNYDDEEAKVTGGRNGFGAKLTNVFSKQFEVETVHSRSRKKFYMKWANNMLQ 175

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
                     +   T +TF PD  +F     F    LL M +    ++G        DK 
Sbjct: 176 HDDPVIVPCDSADYTMVTFYPDFALFHV-DKFSEDMLLMMKRRVYDVAG------CTDKT 228

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
           +             FP  +  Y     E ++   S                 E  +    
Sbjct: 229 LKCFLNDERIACTTFPEYVDLYPTMGEERKAASYSR-----------VNDRWEVCVRVSN 277

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
             P+  S+ N+I T  GGTH   +   +   + + A+  +      +    +       +
Sbjct: 278 IGPQQVSFVNSIATTRGGTHVKYIMDQIISKVVEQAKKKK---KTDVKPHMIRPHIFLFV 334

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           +  I  P F  QTK  L ++ ++      L +    Y++ + I    +     + + E  
Sbjct: 335 NCLIENPGFDSQTKETLNTVKSKFGSTCDLPNSIVDYIMSSGIVERSVEMANSKIAREMA 394

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQ 487
            + +  +  +   I KL    +        +H   L + EGDSA          ++R   
Sbjct: 395 SKMRSSDRKQIMGIPKLDDANE---AGGKHSHRCTLILTEGDSAKTLCTAGLAVKDRDYF 451

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADV 546
            V PLRGK LNV  A  +K+   ++I  +++ +G   R +Y   D LRY  ++IM+D D 
Sbjct: 452 GVFPLRGKPLNVREASLKKLAACEEIQCVMKIMGLDIRQKYENADGLRYGHLMIMSDQDH 511

Query: 547 DGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRIT-QGT----KSVYAHDEEHKQKI 600
           DG+HI  LL+ F +    +L+     L     P+ +   +G     K++         + 
Sbjct: 512 DGSHIKGLLINFIHCFWPNLLRVPGFLQQFITPIVKARPKGRGGAGKAISFFSMPDYFEW 571

Query: 601 LEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660
            +    +     +I  +KGLG   A + +E   + ++  L  VE  +           + 
Sbjct: 572 KKAIGDN-LSNYQIRYYKGLGTSGAEEGREYFENIDRHRLNFVEQEQSEE-----DRIVM 625

Query: 661 KLMGTKADERFKFIQERASFID 682
                + ++R ++I    + ++
Sbjct: 626 AFGKDRVEDRKEWITNFKTNVN 647


>gi|221060064|ref|XP_002260677.1| DNA topoisomerase II [Plasmodium knowlesi strain H]
 gi|193810751|emb|CAQ42649.1| DNA topoisomerase II, putative [Plasmodium knowlesi strain H]
          Length = 1506

 Score =  356 bits (914), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 134/726 (18%), Positives = 255/726 (35%), Gaps = 94/726 (12%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----------------------E 71
             N+S  + Y   S      +E + +RP  YIG  +                        
Sbjct: 2   SKNKSIEERYQKKS-----QIEHILLRPDTYIGSVEMHTQLLWIWNKERNRMVQKNITYV 56

Query: 72  KALHHLFSEVIDNAMD------EVIAGYANLIEVSLDGNGF-LTVVDNGRGIPVENHPKF 124
             L+ +F E+I NA D      E        I++ ++     ++V ++G GIPVE H + 
Sbjct: 57  PGLYKIFDEIIVNAADVKAREKEKSENPMTCIKIEINKEQKKISVYNDGEGIPVEIHKEM 116

Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK- 183
            N     +I   L     +D++   I+GG +G G  + N  S E  V     +     K 
Sbjct: 117 -NIYVPHMIFGELLTSDNYDDAEDRITGGRNGFGAKLTNIFSKEFVVQCGDSSRKKEFKM 175

Query: 184 -FSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSGR 240
            ++  +        +    K   R+TF+PD       +      + L K     A     
Sbjct: 176 VWTDNMSKFSEPIIKNYNGKDFVRVTFKPDLAKFGMTEMDDDIESLLCKRVYDLAGTCSV 235

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT--------------------------YLQ 274
            +   + ++   + +            G+                             + 
Sbjct: 236 -RVYLNGNRLAIKDFKSYVDLYLKDNAGVSPGKGGANNNANANGNADGSANQDTQNPDVS 294

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC----------EENPEITSYCNTILT 324
              E      ++       +       V+                    +  S+ N+I T
Sbjct: 295 QSQEPGEGTPTKSNAANGTQNNDEEEIVKIHEKQHRWEIVVSKTDGSQFQQVSFVNSICT 354

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
            +GG+H + +   L   + K     +NK  + I S  +       ++  I  P F  QTK
Sbjct: 355 TKGGSHVNYIVEQLLNSLSK-KANAKNKGGMEIKSGHIKNHLWVFVNCLIVNPTFDSQTK 413

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI 444
             L +   +   +  L D   + ++++ I +  LL    +   E  ++ K      +  I
Sbjct: 414 ETLTTKPVKFGSKCILSDKTINGVLKSSILSNILLWAQAKAQVELRKKMKAGSSKARERI 473

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVAS 501
             +       D     +    L + EGDSA  S     +   R    V PL+GK+LNV  
Sbjct: 474 IGIPKLEDANDAGSKHSQDCTLILTEGDSAKTSCLAGLSIVGRDKYGVFPLKGKLLNVRD 533

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQY--REEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
           A  +++ +N++I ++ + +G     +     + LRY  ++IMTD D DG+HI  LL+   
Sbjct: 534 ASFKQLMDNKEIQNIFKIMGLDITDKNKEDIKGLRYGSLMIMTDQDYDGSHIKGLLINMI 593

Query: 560 YQEMYDLIEQ-KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           ++    L++    L     P+ ++ +G +          ++  E     G    +I  +K
Sbjct: 594 HKFWPSLLKHKGFLSEFVTPIVKVQKGNQEHSFFTIAEYEEWKESTNLVG---WKIKYYK 650

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER- 677
           GLG     + K+   D     ++   +            + +K    + ++R  ++Q   
Sbjct: 651 GLGTSTDKEFKQYFSDIKNHKIMF--LWTGDRDGDSIDMAFSK---KRIEDRKIWLQNFV 705

Query: 678 -ASFID 682
             S++D
Sbjct: 706 IGSYVD 711


>gi|330801777|ref|XP_003288900.1| hypothetical protein DICPUDRAFT_4475 [Dictyostelium purpureum]
 gi|325081045|gb|EGC34576.1| hypothetical protein DICPUDRAFT_4475 [Dictyostelium purpureum]
          Length = 1162

 Score =  356 bits (914), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 142/682 (20%), Positives = 264/682 (38%), Gaps = 77/682 (11%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTD---------------------EKALHH 76
           ++  + Y    +     L+ + +RP  YIG T+                        ++ 
Sbjct: 2   KTLEEIYQKKEL-----LDQILLRPDTYIGSTEKQEEELWVWENERMVRRKVSFVPGIYK 56

Query: 77  LFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           +F E++ NA D          I+V +D  NG ++V ++G GIP+  H +       E+I 
Sbjct: 57  IFDEILVNAADNKQREETMKFIKVEIDSANGRISVTNDGAGIPIHIHKEH-KVYIPELIF 115

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQ--NTIFSQKFSRGIPLSP 192
             L     +D+S   ++GG +G G  + N  S +  V  A      ++ Q F+  +    
Sbjct: 116 GHLLTSSHYDDSEKRLTGGRNGFGAKLANIFSTKFIVECADSGSKKLYKQVFTNNMRNKE 175

Query: 193 LEKKEKVRNKR-GTRITFRPDPKIFGD--KAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
             K     NK   T+ITF P+   FG         A L K     A  +  +K   +  +
Sbjct: 176 DPKITSYSNKTNYTKITFYPELSRFGMVSFDEDLIALLSKRVYDIAGCNPTLKVSLNDQE 235

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
                             G++++ +                   +K + R  +   ++  
Sbjct: 236 L-----------------GIRSFEKYVNLYFPDADDAPKVY--YEKVSPRWEIAVTLST- 275

Query: 310 EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGI 369
           E   +  S+ N+I T +GGTH +     +   I +   + +  +   I    +       
Sbjct: 276 EGQFQQVSFVNSICTVKGGTHVTHALSKVISEITE--AVLKKHKGGEIKPAFVKNHLFVF 333

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           ++  I  P F  QTK  L S            + F   ++ +       +   +E  E++
Sbjct: 334 VNSLIENPHFDSQTKETLTSKITSFGSRCEPSEKFLKKVIDSKSGIIATILAFVEFKEQQ 393

Query: 430 LRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSN 486
             +   +   +            LA  S++      L + EGDSA   A    +   + +
Sbjct: 394 SIKSSSKPGKKGKVTHSKLDDASLAGSSKSAD--CTLILTEGDSAKTLAIAGISVVGKDH 451

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDAD 545
               PL+GK+LNV     +K   N +I +++  LG +   +Y +   LRY  ++IMTD D
Sbjct: 452 YGAFPLKGKLLNVRE-QGQKALKNDEICNIMMILGLQPFVKYEDVSKLRYGHLMIMTDQD 510

Query: 546 VDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQ-GTKSVYAHDEEHKQKILEE 603
            DG+HI  L++ F +     L+     L     P+ ++++ G  ++  +      +  E+
Sbjct: 511 NDGSHIKGLIINFIHHFWPQLLHMPGFLVEFITPIVKVSKNGKNAISFYTLPEFLEWREK 570

Query: 604 FKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLM 663
             K      +I  +KGLG   AS+ KE   D  K    +++   D  +      + +K  
Sbjct: 571 NPK----GWDIKYYKGLGTSQASEGKEYFSDLEKH---KIDFEWDDKADTSIDLAFSK-- 621

Query: 664 GTKADERFKFIQER--ASFIDD 683
            +KADER K++ E    ++++ 
Sbjct: 622 -SKADERKKWMAEHVEGTYLEQ 642


>gi|146182234|ref|XP_001024182.2| DNA gyrase/topoisomerase IV, A subunit family protein [Tetrahymena
           thermophila]
 gi|146143912|gb|EAS03937.2| DNA gyrase/topoisomerase IV, A subunit family protein [Tetrahymena
           thermophila SB210]
          Length = 1680

 Score =  356 bits (914), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 133/686 (19%), Positives = 261/686 (38%), Gaps = 86/686 (12%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVI 82
            ++ +    LE + +RP  Y+G  +                         AL+ +F E++
Sbjct: 4   ETTYQKKTQLEHILLRPDTYVGSNEYQDEQMWVLADDGSSFENRQIKYVPALYKIFDEIL 63

Query: 83  DNAMDEVIAG-------------------YANLIEVSLD-GNGFLTVVDNGRGIPVENHP 122
            NA D   +                        ++V +D  N  ++++++G+GIPV+ H 
Sbjct: 64  VNAADNYQSDLMIDRKQTNTFQFYKQRDKRMKRLDVIIDQKNNCISILNDGKGIPVQIHK 123

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR--QNTIF 180
           ++ N    E+I   L     +++   ++ GG +G G  + N  S +  V  A       F
Sbjct: 124 EY-NIYVPELIFGHLLTSSNYNDEEKKVVGGRNGFGAKLTNIFSTKFIVESADSKNKKKF 182

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLLKMTQSKAYLS 238
              +++ +      +         T+ITF PD K F  K         + K     A + 
Sbjct: 183 QMTWTKNMSEQSEPQISSYTESDYTKITFYPDLKKFHMKELEKDIVDLMKKRVYDMAGVI 242

Query: 239 GRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH 298
           G         + I+        + +    G +                     ++ KGT+
Sbjct: 243 GGSVKVSLNGERISISSFSDYCDFYLKNQGAEVIKV-----------------SDNKGTN 285

Query: 299 RGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII 358
               E   +  E   +  S+ N+I T +GGTH + +   +T  + +   L + +++++I 
Sbjct: 286 NQRWEVIASLSEGQFQQVSFVNSICTSKGGTHVNYITDQITEKLME--TLKKKEKSLNIK 343

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
              +       ++  I  P F  QTK  L            + + F        +  + +
Sbjct: 344 QFQVKSHLWIFVNCLIENPSFDTQTKETLTLRQQSFGSTCEVSEKFIK-----ELLKSNI 398

Query: 419 LEWVIERSEERLRRRKQREVNRKTAIRKLRLP--GKLADCSQNIAHGTELFIVEGDSAGG 476
           +  ++ ++  + + +  + ++ K   R L +P      D     A    L I EGDSA  
Sbjct: 399 INHILLQARAKEQAKMAKTLSAKKQSRLLGVPKLEDANDAGTRNAESCTLIITEGDSAKA 458

Query: 477 SAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED- 532
            A        R    V PL+GK+LNV  + S++I  N +I ++++ +G +  + Y     
Sbjct: 459 LAMSGIEVVGRDKFGVFPLKGKMLNVRDSTSKQITENLEIQNIIKVMGMKLNTNYDNVKS 518

Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE-QKHLFLISPPLFRITQGTKSVYA 591
           LRY  ++IM D D DG+HI  L + F       L +    L     P+ ++ +G +S+  
Sbjct: 519 LRYGSIMIMADQDHDGSHIKGLFINFIQNFWPSLFQMDGFLKEFITPIVKVRKGNQSISF 578

Query: 592 HDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651
              +  ++         +   +I  +KGLG     + +E   + NK  +         + 
Sbjct: 579 FSIQDFKRWKSTCP--NQHLWKIKYYKGLGTSTDQEAQEYFGNINKHVISF--KYNGKDD 634

Query: 652 LKDTQDSINKLMGTKADERFKFIQER 677
                 + NK    +A++R K++ + 
Sbjct: 635 EDAIDLAFNK---KRAEDRKKWLVKY 657


>gi|322707413|gb|EFY98991.1| DNA topoisomerase 2 [Metarhizium anisopliae ARSEF 23]
          Length = 1647

 Score =  356 bits (913), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 158/717 (22%), Positives = 278/717 (38%), Gaps = 72/717 (10%)

Query: 10  STLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT 69
           S   P ++  ++ +          + ++++A++ Y     + L  LE +  RP  YIG  
Sbjct: 93  SGGVPLAEVENDSVLIDVPPTKPTSKSSKTATEMY-----QKLTQLEHIIKRPDTYIGSV 147

Query: 70  D-----------------------EKALHHLFSEVIDNAMDEVIA-GY-ANLIEVSLD-G 103
           +                           + +F E++ NA D     G     ++V+++  
Sbjct: 148 EKTDQQMWVYNKETSQMVYKNISFVPGFYKIFDEIMVNAADNSQREGSGMTYMKVNINRA 207

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
            G + V +NG+GIP+  H K       E+I   L AG  FD++  +  GG +G G  + N
Sbjct: 208 TGEINVENNGKGIPIVIHEK-EKIYIPEMIFGHLLAGSNFDDNEKKTVGGRNGYGAKLCN 266

Query: 164 ALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
             S E  V          + Q ++  +      K    ++    RITF+PD   FG   G
Sbjct: 267 VFSQEFTVECQDSGNGKRYKQTWTDNMQKMQKAKITSNKSADFVRITFKPDYDRFGMPEG 326

Query: 222 FDAA---RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
            D      L +     A     VK   + ++         + ++F     L         
Sbjct: 327 IDDDLEALLYRRVYDMAGTVHGVKVYLNGEQI--------KLKDFKAYCDLYAKSIAAER 378

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
                 +   T   +K  +H    E A    +   +  S+ N+I T  GGTH + +   +
Sbjct: 379 TAEEGGTPTCTVDIDKDKSH-PRWEVAFTVSDGTFQQVSFVNSIATTTGGTHVNYIADQI 437

Query: 339 TRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
           T        L + K+  S+    L       ++ FI  P F  QTK ++ +  +Q   + 
Sbjct: 438 TGS--LLKALDKKKKGHSLKQSHLRNHIFIFINCFIENPAFNSQTKEQMTTKVSQFGSKC 495

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            L D F   + +     +  +E +++ ++++  +   +    K A        +      
Sbjct: 496 VLGDNFLKAIAK-----SDAIENIMDFAQKKADKMLSKSDGSKRARVSNAKLVEANLAGT 550

Query: 459 NIAHGTELFIVEGDSAGGSAKQAR---NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
              H   L + EGDSA G A   R   +     V PLRGK+LNV  A  ++I  NQ+I +
Sbjct: 551 RRGHECTLILTEGDSAKGLAVSGRAILDPDKIGVFPLRGKLLNVRDASLDQITKNQEIQN 610

Query: 516 LVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK-HLF 573
           + Q LG + +  Y +   LRY  ++IMTD D DG+HI  LL+ F   +   L++    L 
Sbjct: 611 IKQFLGLKHKQVYTDTKSLRYGHLMIMTDQDHDGSHIKGLLINFLQVQFPSLLKIPQFLQ 670

Query: 574 LISPPLFRITQG------TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
               P+ ++ QG       +      +    +  E  K     + +   FKGLG      
Sbjct: 671 EFITPIVKVWQGPDPKKPQRLKSFFTQPQYDEWKESHKAE-LSRWQSKYFKGLGTSSNED 729

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE--RASFID 682
            +    + +   L   E+ K   + +      +K    KAD R +++      +F+D
Sbjct: 730 AQVYFTNLDNH-LKEFEVMKSEEA-ELFDLVFSK---KKADARKEWLGNFIPGTFLD 781


>gi|68069037|ref|XP_676429.1| DNA topoisomerase II [Plasmodium berghei strain ANKA]
 gi|56496123|emb|CAH96271.1| DNA topoisomerase II, putative [Plasmodium berghei]
          Length = 1092

 Score =  356 bits (913), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 139/732 (18%), Positives = 264/732 (36%), Gaps = 101/732 (13%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----------------------E 71
             N++  + Y   S      +E + +RP  YIG  +                        
Sbjct: 2   SKNKTIEERYQKKS-----QIEHILLRPDTYIGSVEMHTQLLWIWNKEKNRMVQKNITYV 56

Query: 72  KALHHLFSEVIDNAMD------EVIAGYANLIEVSLDGNG-FLTVVDNGRGIPVENHPKF 124
             L+ +F E+I NA D      E        I++ ++     ++V ++G GIPV+ H + 
Sbjct: 57  PGLYKIFDEIIVNAADVKAREKEKSENPMTCIKIEINKEQKRISVYNDGEGIPVDIHKEM 116

Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184
            N     +I   L     +D++   I+GG +G G  + N  S E  V     +     K 
Sbjct: 117 -NIYVPHMIFGELLTSDNYDDAEDRITGGRNGFGAKLTNIFSKEFTVQCGDSSRKREFKM 175

Query: 185 SR--GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLLKMTQSKAYLSGR 240
           +    +        +    K   ++TF+PD   FG           L K     A     
Sbjct: 176 TWSQNMSKFSEPHIKNYNGKDYVKVTFKPDLDKFGMAELDDDIECLLHKRVYDLAGTC-N 234

Query: 241 VKTCWSCDKEIAEKYGIP-------------------------------------EKEEF 263
           V+   +  +   + +                                        +   F
Sbjct: 235 VRVYLNGTRLPVKDFKSYVDLYLRDNSHPNTNPSVSKNALNGNTDASVNKTIDNLDVSIF 294

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH----RGTVEWAIAWCE-ENPEITSY 318
           +  GG    +          +S     K E++       +   E  I+  +    +  S+
Sbjct: 295 HDNGGGAGDITPSKTTEENGNSNFNNNKYEEEIVKIHEKQHRWEIVISKTDGSQFQQVSF 354

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPE 378
            N+I T +GGTH S +   L   + K     +NK  + I S  +       ++  I  P 
Sbjct: 355 VNSICTTKGGTHVSYIVDQLLNSLSK-KANAKNKGGMEIKSGHIRNHLWVFVNCLIVNPT 413

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
           F  QTK  L +  ++   +  L D   + ++++ I +  LL    +   E  ++ K    
Sbjct: 414 FDSQTKETLTTKQSKFGSKCILTDKTINNVLKSSILSNILLWAQAKAQVELRKKMKAGSS 473

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGK 495
             +  I  +       D     +    L + EGDSA  S     +   R    V PL+GK
Sbjct: 474 KARERIIGIPKLEDANDAGSKYSQECTLILTEGDSAKTSCLAGLSIVGRDRYGVFPLKGK 533

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE--DLRYEKVIIMTDADVDGAHIAS 553
           +LNV  A  +++ +N++I ++ + +G     + +++   LRY  + ++TD D DG+HI  
Sbjct: 534 LLNVRDASFKQLMDNKEIQNIFKIMGLDITDKNKQDIKGLRYGSL-MITDQDYDGSHIKG 592

Query: 554 LLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612
           LL+   ++    L++    L     P+ ++ +G + +        ++  E          
Sbjct: 593 LLINMIHKFWPSLLKHKGFLCEFVTPIVKVQKGNQELSFFTIAEYEQWKE---NTNLVGW 649

Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
           +I  +KGLG     + K+   D     +  V +            + +K    + ++R  
Sbjct: 650 KIKYYKGLGTSTDKEFKQYFSDIQSHKI--VFLWTGDRDGDSIDMAFSK---KRIEDRKL 704

Query: 673 FIQER--ASFID 682
           ++Q     S++D
Sbjct: 705 WLQNFILGSYVD 716


>gi|110668558|ref|YP_658369.1| DNA gyrase / DNA topoisomerase II subunit B [Haloquadratum walsbyi
           DSM 16790]
 gi|109626305|emb|CAJ52763.1| DNA gyrase / DNA topoisomerase II subunit B [Haloquadratum walsbyi
           DSM 16790]
          Length = 852

 Score =  356 bits (913), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 166/442 (37%), Positives = 246/442 (55%), Gaps = 18/442 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
              Y A  I++LEGLE VR RP MYIG TD + LHHL  EV+DNA+DE +AG+ + I+V+
Sbjct: 4   ETEYGAGDIQVLEGLEAVRKRPAMYIGSTDSRGLHHLVYEVVDNAIDEALAGHCDQIDVT 63

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +G ++V DNGRGIPV+ H +  +   +E+I+T LHAGGKFDN +Y++SGGLHGVG+S
Sbjct: 64  LHEDGSVSVADNGRGIPVDTHEQH-DIPAVEVIMTVLHAGGKFDNKSYQVSGGLHGVGVS 122

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE---KVRNKRGTRITFRPDPKIFG 217
           VVNALS  L V + R   ++  +F  G P     ++        + GT I F P   IF 
Sbjct: 123 VVNALSRWLEVEIKRDGALWRDRFEYGEPQPGAFERVRDLDPDEETGTTIRFWPSDDIFE 182

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F+ + L    +  A+L+  V+ C + + +           +F F GG++ +++   
Sbjct: 183 T-TEFEFSTLENRLRELAFLNSGVEICINGETDDIN-------SKFCFNGGIREFVKYLD 234

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHESGLRV 336
           E ++++   +   + E+ G     VE A+   EE    I ++ N I T EGGTH +G + 
Sbjct: 235 ETKTVLHDSVVHYQNEQDGI---EVEVALQATEELQGSIHAFANNINTREGGTHLTGFKT 291

Query: 337 ALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           ALTR I  Y           S+  +D+      ++S+   +P+F GQTKTKL + D +  
Sbjct: 292 ALTRVINDYGREHNLLDGFDSLQGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSDVRGI 351

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454
           VE+   +    YL +NP  A  ++   +E ++ R   ++  E   RK+A+    LPGKLA
Sbjct: 352 VESTTHERLGTYLEENPDVAKVIVRKAVEAAKARKAAKQAEELTRRKSALESTSLPGKLA 411

Query: 455 DCSQNIAHGTELFIVEGDSAGG 476
           DC       +ELFIVEGDSAGG
Sbjct: 412 DCQSRDPAESELFIVEGDSAGG 433



 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 118/220 (53%), Gaps = 6/220 (2%)

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
             +  G     SAKQ R R  QA+LPL+GKILNV     ++I  N ++  L+ A+G    
Sbjct: 638 FALASGVFVHNSAKQGRERRFQAILPLKGKILNVEKHRLDRILENDEVRALITAIGAGIG 697

Query: 526 SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG 585
            ++  ED RY ++II++DADVDGAHI +LLLT  Y+ M  L+E  +++   PPL+RI   
Sbjct: 698 DEFNVEDARYNRLIILSDADVDGAHIRTLLLTLLYRHMRPLVEAGYVYAAKPPLYRIRYN 757

Query: 586 TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645
             +  A  +  + +++ +         ++ RFKGLGEM   QL ET M+   R L ++ I
Sbjct: 758 GNTYDAMTKSERDQVISDVCNGNPT--QVQRFKGLGEMNPEQLWETTMNPENRVLKQITI 815

Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
                         + LMG   + R +FI++RA+  + V 
Sbjct: 816 ED----AAAADKMFSVLMGDAVEPRKEFIKDRATDAEWVD 851


>gi|288925439|ref|ZP_06419373.1| DNA gyrase subunit B (Topoisomerase II subunit B) [Prevotella
           buccae D17]
 gi|288337910|gb|EFC76262.1| DNA gyrase subunit B (Topoisomerase II subunit B) [Prevotella
           buccae D17]
          Length = 627

 Score =  356 bits (912), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 181/675 (26%), Positives = 285/675 (42%), Gaps = 101/675 (14%)

Query: 55  LEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTV 109
           +E VR RPGMYIG        E  ++ L  EVIDN++DE      + IEV +D N  ++V
Sbjct: 1   MEHVRTRPGMYIGRLGDGSLPEDGIYVLLKEVIDNSIDEFKMNAGDRIEVDIDDNLRVSV 60

Query: 110 VDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDEL 169
            D GRGIP            L   ++ L+ GGK+D+  ++ S GL+GVG+  VNALS   
Sbjct: 61  RDYGRGIPQGK---------LVEAVSMLNTGGKYDSKAFKKSVGLNGVGLKAVNALSARF 111

Query: 170 HVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLK 229
                R  T+    F RG+         +  ++ GT I F PD  +      F    +  
Sbjct: 112 EAKSYRDGTVRELVFERGVLKDDETH--ETSDESGTFIFFEPDA-LLFKNYKFHDDIVET 168

Query: 230 MTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFT 289
           M ++  YL+  +   ++  +                  GLK  L   +    L       
Sbjct: 169 MLRNYTYLNTGLTIMYNGRRI-------------LSRHGLKDLLTDNMTVDGLYDIVHVK 215

Query: 290 GKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
           G+          +E A     +  E    + N   T +GGTH+S  +  + + IK++   
Sbjct: 216 GE---------DIEIAFTHTNQYGEEYHSFVNGQHTTQGGTHQSAFKEHIAKTIKEFYG- 265

Query: 349 TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR-------TVENALR 401
                       D+    V  +++ + EP F  QTK KL S             V + ++
Sbjct: 266 -------KYEYGDIRNGLVAAIALNVEEPVFESQTKIKLGSTQMAPDGDSINKYVGDFIK 318

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIA 461
              D+YL  +   A  +   + E   ER       ++ R+ A +      KL DC  + +
Sbjct: 319 KEIDNYLHIHQDVAEVIENKIKESERERKAMAGVTKLARERAKKANLHNRKLRDCRIHFS 378

Query: 462 HGT-------ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
                      +FI EGDSA GS  ++R+ + QAV  LRGK LN      + +  N++  
Sbjct: 379 DVKNERKEEASIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSFGLTKKVVYENEEFN 438

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            L  AL            LRY KVI+ TDADVDG HI  L++TFF Q   +LI++ H+++
Sbjct: 439 LLQAALDIEDGLDT----LRYNKVIVATDADVDGMHIRLLIITFFLQFFPELIKKGHVYV 494

Query: 575 ISPPLFRIT------QGTK-------------------SVYAHDEEHKQKILEEFKKHGK 609
           +  PLFR+       +  K                   + Y + +E +Q+ +++      
Sbjct: 495 LQTPLFRVRNKRTKVKNKKVIEEADAKRDGKEKKSDFITHYCYSDEERQQAIKDLGPD-- 552

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669
              EI+RFKGLGE+   +     +  + R L +V ++K+       Q  +   MG    E
Sbjct: 553 --PEITRFKGLGEISPDEFAH-FIGPDMR-LEQVTLHKN----DQVQKLLEYYMGKNTME 604

Query: 670 RFKFIQERASFIDDV 684
           R  FI +     +D+
Sbjct: 605 RQNFIIDNLVIEEDI 619


>gi|282896629|ref|ZP_06304644.1| DNA gyrase, B subunit [Raphidiopsis brookii D9]
 gi|281198499|gb|EFA73385.1| DNA gyrase, B subunit [Raphidiopsis brookii D9]
          Length = 798

 Score =  356 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 166/439 (37%), Positives = 249/439 (56%), Gaps = 5/439 (1%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +Y A  I++LEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AGY   ++V 
Sbjct: 2   TSSYSADQIQVLEGLEAVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALAGYCTHVDVE 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L+ +G  TV D+GRGIP + HPK   KS LE +LT LHAGGKF    Y++SGGLHGVG+S
Sbjct: 62  LNADGSCTVTDDGRGIPTDIHPK-TGKSALETVLTVLHAGGKFGGGGYKVSGGLHGVGVS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ + +TV R++ + +Q++ RG P + L+ +   +++ GT + F+PD +IF    
Sbjct: 121 VVNALSEVVDITVWREHKVHTQRYERGAPTTELQVEPDQQSRTGTSVKFKPDAQIFTTGT 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   L    +  AYL+  VK  ++  +    K   P+ E + + GG+K Y+     ++
Sbjct: 181 EFDYITLAGRLRELAYLNAGVKISFTDHRLELLKTDTPKVETYEYKGGIKEYVSYINRDK 240

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
             +  EI   + E+    +  V            +  + N I T +GGTH  GL+  LTR
Sbjct: 241 QALHEEIIYVQGERNNV-QVEVALQWCTDAYTDNVLGFANNIRTIDGGTHLEGLKTVLTR 299

Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +   A      +    ++  + +      ++SV + +PEF GQTKTKL + + +  V++
Sbjct: 300 TLNSIARKRNKIKENESNLSGEHVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDS 359

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            + +    YL  +P  A  +L+  I+  +     R  RE V RK+ +    LPGKLADCS
Sbjct: 360 LVGEVLTEYLEFHPGIADSILDKAIQAFKAAEAARHARELVRRKSVLESSPLPGKLADCS 419

Query: 458 QNIAHGTELFIVEGDSAGG 476
                 +E+FIVEGDSAGG
Sbjct: 420 SRDPAESEIFIVEGDSAGG 438



 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 89/239 (37%), Positives = 124/239 (51%), Gaps = 9/239 (3%)

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           P K       + H     +  G     SAKQ R+R  QA+LPLRGKILN+      KI  
Sbjct: 565 PEKFDVYDLEVPHTHNFALAAGVFVHNSAKQGRDRRTQAILPLRGKILNIEKTDDAKIYK 624

Query: 510 NQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           N ++  L+ ALG   + +  +   LRY +V+IMTDADVDGAHI +LLLTFFY+    LIE
Sbjct: 625 NNEVQSLITALGLGVKGEEFDASQLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRSLIE 684

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           Q  +++  PPL+++ +G    Y + +   Q+ +      G     I RFKGLGEM+  QL
Sbjct: 685 QGFIYIACPPLYKVERGKNYNYCYSDRELQQHISTLP--GNANYTIQRFKGLGEMMPEQL 742

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS--FIDDVG 685
             T M+   RTL +VEI        +       LMG +   R +FI+   S   + D+ 
Sbjct: 743 WTTTMNPETRTLKQVEIED----AAEADRIFTILMGDRVAPRREFIETYGSKLNLTDLD 797


>gi|46370594|gb|AAS90119.1| DNA topoisomerase type 2 [Tetrahymena thermophila]
          Length = 1402

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 135/686 (19%), Positives = 255/686 (37%), Gaps = 81/686 (11%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD----------------------- 70
           +   +S  + Y   S      +E + +RP  Y+G  +                       
Sbjct: 2   SKQEKSVEERYQKKS-----QIEHILLRPDSYVGSIENEQKSLWILNKEGTALEEKEIDF 56

Query: 71  EKALHHLFSEVIDNAMDEVIAG----YANLIEVSLDGNGF-LTVVDNGRGIPVENHPKFP 125
             A + +F E+I NA D           + I+V +D     ++V +NG+GIP++ H +  
Sbjct: 57  VPAFYKIFDEIIVNAADNFQRNQDGAPMDTIKVMIDQQNQMISVWNNGQGIPIQIHKEH- 115

Query: 126 NKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFS 185
           N    E+I   L     +D+   ++ GG +G G  + N  S +  V           K  
Sbjct: 116 NIYIPEMIFGHLLTSSNYDDKEEKVVGGRNGFGAKLTNIFSKKFIVECNDDKRKKYYKQE 175

Query: 186 RGIPLSPLEKKEKVRNKRG---TRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSGR 240
               +S   +     NK+G   T +TF PD       + +   A  L K     A +   
Sbjct: 176 WRKNMSERTEPLITENKKGGNFTCVTFYPDLSKFKMQNISDDMANLLRKRVYDMAGIFNN 235

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
               +  +++I  K        F                   I       K         
Sbjct: 236 KVKVYLNNEQIKIKSFSQYVNLF-------------------IPDIEEQYKCYDPTMTSD 276

Query: 301 TVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISD 360
             E  + + +   +  S+ N I T  GG H   +   +   +++  ++ +  + + I   
Sbjct: 277 RWEILVTFSDGQFKQVSFVNGICTSRGGKHVDFVIDKIVERMQE--QILKKNKDLDIKPH 334

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
            +  +    ++  I  P F  QTK  L +  +    +  L + F   ++      T ++E
Sbjct: 335 QIKQNLFIFMNCLIVNPSFDSQTKDTLTTKASAFGSKPELSEKFIKKIL-----GTGIIE 389

Query: 421 WVIERSEERLRRRKQREVNRKTAIRKLRLP--GKLADCSQNIAHGTELFIVEGDSAGGSA 478
            ++ +++ R   +  + +      R   +P      D     +    L + EGDSA   A
Sbjct: 390 QIVSQAKARQNAKLAKTLKGGKKGRITGIPKLDDANDAGTARSENCTLILTEGDSAKALA 449

Query: 479 KQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT--RSQYREEDL 533
                   R N  V PL+GK+LNV  A  ++I  NQ+I ++ + +G     ++    + L
Sbjct: 450 MAGIEVVGRDNYGVFPLKGKLLNVREANKKQIIENQEIQNICKIIGLDPAVQNYENTKQL 509

Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE-QKHLFLISPPLFRITQGTKSVYAH 592
           RY  ++IM D D DG+HI  L++ F +     L + +  L     P+ ++T+G +     
Sbjct: 510 RYGSLMIMADQDSDGSHIKGLVINFIHHFWPSLFKMKGFLKEFITPILKVTKGDEVHSFF 569

Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINK-DLNS 651
             +  +    + K     + ++  +KGLG     + KE   +  K    ++     D N 
Sbjct: 570 TIQDFKNFAAQ-KGDRLKQYKVKYYKGLGTSTDKEAKEYFSNFYKH---QINFQYLDEND 625

Query: 652 LKDTQDSINKLMGTKADERFKFIQER 677
           ++  +   +   G K  ER  ++   
Sbjct: 626 MEAIELGFS---GKKIKERKDWLANY 648


>gi|156101890|ref|XP_001616638.1| DNA topoisomerase II [Plasmodium vivax SaI-1]
 gi|148805512|gb|EDL46911.1| DNA topoisomerase II, putative [Plasmodium vivax]
          Length = 1502

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 135/738 (18%), Positives = 264/738 (35%), Gaps = 107/738 (14%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----------------------E 71
             N+S  + Y   S      +E + +RP  YIG  +                        
Sbjct: 2   SKNKSIEERYQKKS-----QIEHILLRPDTYIGSVEMHTQLLWVWNKERNRMVQKNITYV 56

Query: 72  KALHHLFSEVIDNAMD------EVIAGYANLIEVSLDGNGF-LTVVDNGRGIPVENHPKF 124
             L+ +F E+I NA D      E        I++ ++ +   ++V ++G GIPV+ H + 
Sbjct: 57  PGLYKIFDEIIVNAADVKAREKEKSENPMTCIKIEINKDQKKISVYNDGEGIPVDIHKEM 116

Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK- 183
            N     +I   L     +D++   I+GG +G G  + N  S E  V     +     K 
Sbjct: 117 -NIYVPHMIFGELLTSDNYDDAEDRITGGRNGFGAKLTNIFSKEFVVQCGDSSRKKEFKM 175

Query: 184 -FSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSGR 240
            ++  +        +    K   ++TF+PD       +      + L K     A     
Sbjct: 176 VWTDNMSRFSEPHIKNYNGKDYVKVTFKPDLAKFGMTEMDDDIESLLCKRVYDLAGTCSV 235

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLK------------------------------ 270
            +   + ++   + +            G+                               
Sbjct: 236 -RVYLNGNRLAIKDFKSYVDLYLKDNAGVSPGNGGSSGSGSGGGSGSGNGSGGGNGGGGE 294

Query: 271 -------------TYLQTKLENRSLISSEIFTGKTEK-----KGTHRGTVEWAIAWCEEN 312
                                ++S  ++       E+     +  HR  +  +     + 
Sbjct: 295 ANNAAENPDVSASQEPGEATPSKSNAANGANNNDEEEIVKIHEKQHRWEIVVSKTDGSQF 354

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSV 372
            ++ S+ N+I T +GG+H + +   L   + K     +NK  + I S  +       ++ 
Sbjct: 355 QQV-SFVNSICTTKGGSHVNYIVEQLLNSLSK-KANAKNKGGMEIKSGHIKNHLWVFVNC 412

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
            I  P F  QTK  L +   +   +  L D   + ++++PI +  LL    +   E  ++
Sbjct: 413 LIVNPTFDSQTKETLTTKPVKFGSKCILTDKTINSVLKSPILSNILLWAQAKAQVELRKK 472

Query: 433 RKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAV 489
            K      +  I  +       D     +    L + EGDSA  S     +   R    V
Sbjct: 473 MKAGSSKARERIIGIPKLEDANDAGSKYSQECTLILTEGDSAKTSCLAGLSIVGRDKYGV 532

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY--REEDLRYEKVIIMTDADVD 547
            PL+GK+LNV  A  +++ +N++I ++ + +G     +     + LRY  ++IMTD D D
Sbjct: 533 FPLKGKLLNVRDASFKQLMDNKEIQNIFKIMGLDITDKNKEDIKGLRYGSLMIMTDQDYD 592

Query: 548 GAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKK 606
           G+HI  LL+   ++    L++    L     P+ ++ +G +          ++  E    
Sbjct: 593 GSHIKGLLINMIHKFWPSLLKHKGFLSEFVTPIVKVQKGNQEHSFFTIAEYEQWKESTNL 652

Query: 607 HGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK 666
            G    +I  +KGLG     + K+   D     ++   +            + +K    +
Sbjct: 653 VG---WKIKYYKGLGTSTDKEFKQYFSDIKNHKIMF--LWTGDRDGDSIDMAFSK---KR 704

Query: 667 ADERFKFIQER--ASFID 682
            ++R  ++Q     S++D
Sbjct: 705 IEDRKLWLQNFIIGSYVD 722


>gi|83317979|ref|XP_731396.1| DNA topoisomerase II [Plasmodium yoelii yoelii str. 17XNL]
 gi|23491424|gb|EAA22961.1| DNA topoisomerase II, putative [Plasmodium yoelii yoelii]
          Length = 1489

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 139/732 (18%), Positives = 263/732 (35%), Gaps = 100/732 (13%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----------------------E 71
             N++  + Y   S      +E + +RP  YIG  +                        
Sbjct: 2   SKNKTIEERYQKKS-----QIEHILLRPDTYIGSVEMHTQLLWIWNKEKSRMVQKNITYV 56

Query: 72  KALHHLFSEVIDNAMD------EVIAGYANLIEVSLDGNGF-LTVVDNGRGIPVENHPKF 124
             L+ +F E+I NA D      E        I++ ++     ++V ++G GIPV+ H + 
Sbjct: 57  PGLYKIFDEIIVNAADVKAREKEKSENPMTCIKIEINREQKKISVYNDGEGIPVDIHKEM 116

Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184
            N     +I   L     +D++   I+GG +G G  + N  S E  V     +     K 
Sbjct: 117 -NIYVPHMIFGELLTSDNYDDAEDRITGGRNGFGAKLTNIFSKEFTVQCGDSSRKKEFKM 175

Query: 185 SR--GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLLKMTQSKAYLSGR 240
           +    +        +    K   ++TF+PD   FG           L K     A     
Sbjct: 176 TWFQNMSKFSDPHIKNYNGKDYVKVTFKPDLDKFGMSELDDDIECLLHKRVYDLAGTC-N 234

Query: 241 VKTCWSCDKEIAEKYGIP-------------------------------------EKEEF 263
           V+   +  +   + +                                        +    
Sbjct: 235 VRVYLNGTRLPVKDFKSYVDLYLRDNNTPNTNPSVSKNALNGNTDASVNKTIDNLDVSIS 294

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH----RGTVEWAIAWCE-ENPEITSY 318
           +  GG    +          +S     K E++       +   E  I+  +    +  S+
Sbjct: 295 HENGGGAGDITPTKTTEENGNSNFNNNKYEEEIVKIHEKQHRWEIVISKTDGSQFQQVSF 354

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPE 378
            N+I T +GGTH S +   L   + K     +NK  + I +  +       ++  I  P 
Sbjct: 355 VNSICTTKGGTHVSYIVDQLLNSLSK-KANAKNKGGMEIKAGHIRNHLWVFVNCLIVNPT 413

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
           F  QTK  L +  A+   +  L D   + ++++ I +  LL    +   E  ++ K    
Sbjct: 414 FDSQTKETLTTKQAKFGSKCTLTDKTINNVLKSSILSNILLWAQAKAQVELRKKMKAGSS 473

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGK 495
             +  I  +       D     +    L + EGDSA  S     +   R    V PL+GK
Sbjct: 474 KARERIIGIPKLEDANDAGSKYSQECTLILTEGDSAKTSCLAGLSIVGRDRYGVFPLKGK 533

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE--DLRYEKVIIMTDADVDGAHIAS 553
           +LNV  A  +++ +N++I ++ + +G     + +++   LRY  ++IMTD D DG+HI  
Sbjct: 534 LLNVRDASFKQLMDNKEIQNIFKIMGLDITDKNKQDIKGLRYGSLMIMTDQDYDGSHIKG 593

Query: 554 LLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612
           LL+   ++    L++    L     P+ ++ +G + +        ++  E          
Sbjct: 594 LLINMIHKFWPSLLKHKGFLCEFVTPIVKVQKGNQELSFFTIAEYEQWKE---NTNLVGW 650

Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
           +I  +KGLG     + K+   D     +    +            + +K    + ++R  
Sbjct: 651 KIKYYKGLGTSTDKEFKQYFSDIQSHKIFF--LWTGDRDGDSIDMAFSK---KRIEDRKL 705

Query: 673 FIQER--ASFID 682
           ++Q     S++D
Sbjct: 706 WLQNFILGSYVD 717


>gi|288871346|ref|ZP_06410123.1| DNA gyrase, B subunit [Clostridium hathewayi DSM 13479]
 gi|288863832|gb|EFC96130.1| DNA gyrase, B subunit [Clostridium hathewayi DSM 13479]
          Length = 496

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 182/479 (37%), Positives = 247/479 (51%), Gaps = 21/479 (4%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A   Y+A SI +LEGLE VR RPGMYIG    K L+HL  E++DNA+DE +AG+ N I V
Sbjct: 30  AKTQYNADSITVLEGLEAVRKRPGMYIGSVGTKGLNHLIYEIVDNAVDEHLAGFCNQIWV 89

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L+ +G  TV D GRGIPVE H K    S   I+L+TLHAGGKFDN  Y+ SGGLHGVG 
Sbjct: 90  TLEADGSCTVRDAGRGIPVEMHKK--GMSAERIVLSTLHAGGKFDNDAYKTSGGLHGVGS 147

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPL-----SPLEKKEKVRNKRGTRITFRPDPK 214
           SVVNALS+ + V V +   I    + RGIP        L  + K +   GT I F PD +
Sbjct: 148 SVVNALSERMSVKVYKNGLIHYDAYERGIPTVELVDGLLPTRGKTKE-TGTEINFLPDGE 206

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     F A  L       AYL+  ++  +   +   E+  +     F+ P G+ +Y++
Sbjct: 207 IFEK-TRFKAEWLKSRLHETAYLNPNLQITYQNKRGGEEETIL-----FHEPEGIISYVK 260

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESG 333
                ++ +   I+     K    +  VE A  + +   E    +CN I T EGGTH +G
Sbjct: 261 ELNSGKAPVHDPIYY----KGTIDKVEVEVAFQFVDTFEENILGFCNNIFTQEGGTHLAG 316

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            +   T+ I  YA       ++  +    D       +++V   +P F GQTKTKL S D
Sbjct: 317 FKTRFTQMINSYARELGILKEKDANFTGADTRNGMTAVVAVKHPDPIFEGQTKTKLASAD 376

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           A + V     D    Y  +N      ++    + ++ R    K +      +       G
Sbjct: 377 ATKAVFTVTGDELQRYFDRNLEILKAVISCAEKSAKIRKAEEKAKTNMLSKSKFSFDSNG 436

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           KLA+C    A   E+FIVEGDSAGGSAK ARNR  QA+LP+RGKILNV  A  E+    
Sbjct: 437 KLANCESRDAEKCEIFIVEGDSAGGSAKTARNRMYQAILPIRGKILNVEKASMEQGFGQ 495


>gi|146320608|ref|YP_001200319.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Streptococcus suis 98HAH33]
 gi|145691414|gb|ABP91919.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Streptococcus suis 98HAH33]
          Length = 471

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 151/479 (31%), Positives = 249/479 (51%), Gaps = 31/479 (6%)

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
                   F    + +  +  A+L  +V    + ++         E+EE+++  G++ ++
Sbjct: 4   DTIFSTTDFKFNTIAERLKESAFLLKQVTMTLTDER-------TGEQEEYHYENGVQDFV 56

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHES 332
               E++  ++  +   + E  G     V+ A+ + +   +   S+ N + T +GGTHE+
Sbjct: 57  SYLNEDKETLTPVL-YFEGEDAG---FQVQVAMQYNDGYSDNILSFVNNVRTKDGGTHET 112

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLV 388
           GL++A+T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL 
Sbjct: 113 GLKLAITKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLG 172

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR 448
           S  A+  V+  + D    +L++N   A+ L+   I+  + R   RK R+ +R     K  
Sbjct: 173 SPLARPVVDGIVSDKLTFFLLENGELASNLVRKAIKARDAREAARKARDESRNGKKNKKD 232

Query: 449 L---PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
                GKL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A   
Sbjct: 233 KGLLSGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMA 292

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
            I  N++I  ++  +G    S +  ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M  
Sbjct: 293 DILKNEEINTMIYTIGAGVGSDFTIEDVNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRP 352

Query: 566 LIEQKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
           L+E   +++  PPL+++++G     K  YA  +   + + ++F K       + R+KGLG
Sbjct: 353 LVEAGRVYIALPPLYKMSKGKGKAEKIAYAWSDGELEDLRKDFGK----GFILQRYKGLG 408

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           EM A QL ET M+   RTL+RV I      L   +  ++ LMG K + R K+I++   F
Sbjct: 409 EMNADQLWETTMNPETRTLIRVTIED----LARAERRVSVLMGDKVEPRRKWIEDNVKF 463


>gi|282899715|ref|ZP_06307679.1| DNA gyrase, B subunit [Cylindrospermopsis raciborskii CS-505]
 gi|281195594|gb|EFA70527.1| DNA gyrase, B subunit [Cylindrospermopsis raciborskii CS-505]
          Length = 798

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 166/439 (37%), Positives = 248/439 (56%), Gaps = 5/439 (1%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +Y A  I++LEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AGY   ++V 
Sbjct: 2   TSSYSADQIQVLEGLEAVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALAGYCTHVDVE 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L+ +G  TV D+GRGIP + HPK   KS LE +LT LHAGGKF    Y++SGGLHGVG+S
Sbjct: 62  LNADGSCTVTDDGRGIPTDIHPK-TGKSALETVLTVLHAGGKFGGGGYKVSGGLHGVGVS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ + +TV R++ + +Q++ RG P + L+ +    ++ GT + F+PD +IF    
Sbjct: 121 VVNALSEVVDITVWREHKVHTQRYERGAPTTELQVEPDQHSRTGTSVKFKPDVQIFTTGI 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   L    +  AYL+  VK  ++  +    K   P+ E + + GG+K Y+     ++
Sbjct: 181 EFDYITLAGRLRELAYLNAGVKISFTDHRLELLKTDTPKVETYEYKGGIKEYVSYINRDK 240

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
             +  EI   + E+    +  V            +  + N I T +GGTH  GL+  LTR
Sbjct: 241 QALHEEIIYVQGERNNV-QVEVALQWCTDAYTDNVLGFANNIRTIDGGTHLEGLKTVLTR 299

Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +   A      +    ++  + +      ++SV + +PEF GQTKTKL + + +  V++
Sbjct: 300 TLNSIARKRNKIKENESNLSGEHVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDS 359

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            + +    YL  +P  A  +L+  I+  +     R  RE V RK+ +    LPGKLADCS
Sbjct: 360 LVGEVLTEYLEFHPGIADSILDKAIQAFKAAEAARHARELVRRKSVLESSPLPGKLADCS 419

Query: 458 QNIAHGTELFIVEGDSAGG 476
                 +E+FIVEGDSAGG
Sbjct: 420 SRDPAESEIFIVEGDSAGG 438



 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 88/239 (36%), Positives = 123/239 (51%), Gaps = 9/239 (3%)

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
             K       + H     +  G     SAKQ R+R  QA+LPLRGKILN+      KI  
Sbjct: 565 AEKFDVYDLEVPHTHNFALTAGVFVHNSAKQGRDRRTQAILPLRGKILNIEKTDDAKIYK 624

Query: 510 NQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           N ++  L+ ALG   + +  +   LRY +V+IMTDADVDGAHI +LLLTFFY+    LIE
Sbjct: 625 NNEVQSLITALGLGVKGEEFDASQLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRSLIE 684

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           Q  +++  PPL+++ +G    Y + +   Q+ +      G     I RFKGLGEM+  QL
Sbjct: 685 QGFIYIACPPLYKVERGKNYHYCYSDRELQQHISTLP--GNANYTIQRFKGLGEMMPEQL 742

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS--FIDDVG 685
             T M+   RTL +VEI        +       LMG +   R +FI+   S   + D+ 
Sbjct: 743 WTTTMNPETRTLKQVEIED----AAEADRIFTILMGDRVAPRREFIETYGSKLNLTDLD 797


>gi|281203022|gb|EFA77223.1| DNA topoisomerase II [Polysphondylium pallidum PN500]
          Length = 1265

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 152/729 (20%), Positives = 270/729 (37%), Gaps = 94/729 (12%)

Query: 15  QSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIG------- 67
            S  S +         ++    ++S  D Y   +       E V +RP  YIG       
Sbjct: 67  SSTTSQKSGGGGTTASNTKVAKSKSIEDVYQKKTPT-----EHVLLRPDSYIGTIQTIED 121

Query: 68  --------------------------GTDE--------------------KALHHLFSEV 81
                                      TD                       L  +F E+
Sbjct: 122 DMWMLSKSIFGSTKNDSQSTSSKKLKSTDSTATVATVDPLYIHSVKAKYIPGLLKIFDEI 181

Query: 82  IDNAMDEVIAGY-ANLIEVSLDG-NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139
           + NA D        + I+V LD  +G L+V ++G+GIPV  H K  N    E+++  L +
Sbjct: 182 LVNAADNKQRDNTMSYIKVELDPVSGVLSVENDGKGIPVAMH-KTENVYVPEMVMGNLMS 240

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT--IFSQKFSRGIPLSPLEKKE 197
           G  F++S  ++ GG +G G  + N  S    V    ++    +SQ +S  + +      E
Sbjct: 241 GSNFNDSELKVVGGRNGFGAKLTNIFSKHFKVETYDKSNGLRYSQSWSDNMSVRHDPIIE 300

Query: 198 KVRNKR-GTRITFRPDPKIFGDKAGFDAARL---LKMTQSKAYLSGRVKTCWSCDKEIAE 253
           KVR     TRI F+PD + F  K+      +    +     A  +  +K   +       
Sbjct: 301 KVRLSSEFTRIEFKPDLEKFHLKSLVGEDIIYLMERRVYDIAGCNPDIKVSLNG------ 354

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP 313
               P K +F     L  +  ++ + ++L + +      +        +           
Sbjct: 355 ---TPIKYDFQSYAKLYEHHLSRSQEKNLSNPQDNLTFGQIGDRWNIGI---GTSDTGQF 408

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVF 373
              S+ N+I T +GG+H + +   + R I +   + +    + +   ++       ++  
Sbjct: 409 TQVSFVNSINTLKGGSHVNFIADQVIRYIAE--RIKKKHPDLEVRPMNIKHHLSLFVNCL 466

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           I  P F  QTK  L +          + +      V+      K+  WV+ R +  L  +
Sbjct: 467 IENPSFDSQTKETLTTKPINFGSTPEVPEKMLEQFVKQSKIIDKIAGWVLMRQQAELVYQ 526

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVL 490
                ++ T  + +             +    L I EGDSA   A    +   R    V 
Sbjct: 527 SSTRTSKSTLAKSIPKLDDANWAGGPKSRQCTLIITEGDSAKSLAVAGMSVLGRDRFGVF 586

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED----LRYEKVIIMTDADV 546
           PLRGK+LNV     +++ +N++I +L   LG   + +Y +E     LRY KV+IMTD D 
Sbjct: 587 PLRGKLLNVRDVAPKQLLSNEEINNLTNILGLSHKRRYHDEQSLSELRYGKVLIMTDQDN 646

Query: 547 DGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKK 606
           DG+HI  L + F +    +L++   L     P+ ++++G             K       
Sbjct: 647 DGSHIKGLFINFIHYFWPELLKADFLEEFVTPIIKVSKGADRKSFFTINDYLKWQRSLPD 706

Query: 607 HGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK 666
                  I  +KGLG   +++ KE   +  K     ++   +  S      + NK     
Sbjct: 707 QSLKGWNIKYYKGLGTNTSAEAKEYFSNLKKHV---IKFKWNDESDHLIGMAFNK---DA 760

Query: 667 ADERFKFIQ 675
           AD+R +++ 
Sbjct: 761 ADKRQQWLM 769


>gi|172998|gb|AAB36610.1| topoisomerase II [Saccharomyces cerevisiae]
          Length = 1429

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 150/681 (22%), Positives = 274/681 (40%), Gaps = 61/681 (8%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE---------------------- 71
           +    SASD Y     + +  LE +  RP  YIG  +                       
Sbjct: 2   STEPVSASDKY-----QKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTI 56

Query: 72  -KALHHLFSEVIDNAMDE-VIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNK 127
              L  +F E++ NA D   +       I+V++      + V ++G+GIP+E H K  N 
Sbjct: 57  VPGLFKIFDEILVNAADNNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNK-ENI 115

Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN--TIFSQKFS 185
              E+I   L     +D+   +++GG +G G  + N  S E  +  A  N    + QK+ 
Sbjct: 116 YIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWE 175

Query: 186 RGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244
             + +    K    +     T++TF+PD   F      D   L  M +    ++G V+  
Sbjct: 176 NNMSICHPPKITSYKKGPSYTKVTFKPDLTRF-GMKELDNDILGVMRRRVYDINGSVRDI 234

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
                  + K    +     +   L+   Q          S+I T   E+        E 
Sbjct: 235 NVYLNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYER---INNRWEV 291

Query: 305 AIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMI 364
           A A  + + +  S+ N+I T  GGTH + +       +KK +E+ + K+  S+ S  +  
Sbjct: 292 AFAVSDISFQQISFVNSIATTMGGTHVNYITDQ---IVKKISEILKKKKKKSVKSFQIKN 348

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           +    ++  I  P F  QTK +L +          +   + + +++  +       + I 
Sbjct: 349 NMFIFINCLIENPAFTSQTKEQLTTRVKDFGSRCEIPLEYINKIMKTDLATR---MFEIA 405

Query: 425 RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA--- 481
            + E    +K     +       +L       +    +   L + EGDSA   A      
Sbjct: 406 DANEENALKKSDGTRKSRITNYPKLEDANKAGT-KEGYKCTLVLTEGDSALSLAVAGLAV 464

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVII 540
             R      PLRGK+LNV  A +++I  N +I  + + +G + R +Y +   LRY  ++I
Sbjct: 465 VGRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMI 524

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIE-QKHLFLISPPLFRI---TQGTKSVYAHDEEH 596
           MTD D DG+HI  L++ F       L++ Q  L     P+ ++        ++  ++   
Sbjct: 525 MTDQDHDGSHIKGLIINFLESSFLGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPD 584

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            +K  EE  +  K   +   +KGLG  LA +++E   + ++   L++  +   N      
Sbjct: 585 YEKWREE--ESHKFTWKQKYYKGLGTSLAQEVREYFSNLDRH--LKIFHSLQGNDKDYID 640

Query: 657 DSINKLMGTKADERFKFIQER 677
            + +K    KAD+R +++++ 
Sbjct: 641 LAFSK---KKADDRKEWLRQY 658


>gi|269799048|gb|ACZ43802.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 469

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 190/480 (39%), Positives = 289/480 (60%), Gaps = 17/480 (3%)

Query: 106 FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNAL 165
            ++V D+GRGIPV+ H +    S  E+ILT LHAGGKFD+++Y++SGGLHGVG+SVVNAL
Sbjct: 1   SVSVSDDGRGIPVDIHEE-EGVSAAEVILTVLHAGGKFDDNSYKVSGGLHGVGVSVVNAL 59

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225
           S++L +T+ R   I +Q +  G+P  P+ +   V +  GT + F P  + F +   F   
Sbjct: 60  SEKLELTIFRHGKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFWPSHETFTNTL-FHYD 117

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
            L K  +  ++L+  V      ++E        + + F + GG+K ++     N++ I+ 
Sbjct: 118 ILAKRLRELSFLNSGVSIKLIDERED------GKSDHFVYEGGIKAFVDYLNVNKTPINK 171

Query: 286 EIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKK 344
           + F    E++     TVE A+ W +     I  + N I   +GGTH +G R ALTR +  
Sbjct: 172 DAFHFSAERED--GITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGALTRTLNN 229

Query: 345 YAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
           Y E     +  ++ +   DD       ++SV + +P+F+ QTK KLVS + +  VE A+ 
Sbjct: 230 YMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQAMG 289

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNI 460
           +    YL++NP EA+ ++  +I+ S  R   RK      RK A+    LPGKLADC +  
Sbjct: 290 EKLAEYLLENPKEASTVVTKIIDASRAREAARKARDMTRRKGALDLAGLPGKLADCQEKD 349

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ A+
Sbjct: 350 PALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAM 409

Query: 521 GCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           GC   R +Y  +  RY ++IIMTDADVDG+HI +LLLTFF+++M +LIE+ ++++  PPL
Sbjct: 410 GCGIGRDEYNPDKTRYHQIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIYIAQPPL 469


>gi|331213043|ref|XP_003307791.1| DNA topoisomerase 2 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309298194|gb|EFP74785.1| DNA topoisomerase 2 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 1566

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 140/725 (19%), Positives = 259/725 (35%), Gaps = 113/725 (15%)

Query: 3   DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQ-SASDNYDASSIRILEGLEPVRMR 61
           ++  D  +        +     K     + PA + + +AS+ Y     + L  LE V  R
Sbjct: 69  ENQADSDNNSEAGDVLTELPTSKPPTTTNGPAGSKKKTASETY-----QKLSQLEHVLKR 123

Query: 62  PGMYIGGTD-----------------------EKALHHLFSEVIDNAMDEVIA-GYANLI 97
           P  YIG  +                          L+ +  E++ NA D        + +
Sbjct: 124 PDTYIGSVEAIRQFMWIFDKEKKTMVNKEISFVPGLYKIVDEILVNAADNKQRDDSMDTL 183

Query: 98  EVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           +V++D     ++V++NG+GIP+E H +       E+I   L AG  FD+   + +GG +G
Sbjct: 184 KVTIDSEKNIISVMNNGKGIPIEIH-ETEQIYIPELIFGHLLAGSNFDDEEKKTTGGRNG 242

Query: 157 VGISVVNALSDELHVTVARQN--TIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDP 213
            G  + N  S E  V  A +     + Q F   + +    K    +  +  T+I+F+PD 
Sbjct: 243 YGAKLANIYSTEFIVEAADKQTAKKYKQIFKNNMSVKEKPKITDNKKGEEYTKISFKPDL 302

Query: 214 KIFGDKAG-----FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
             F   A         A + K     A     VK   + ++    K    +K    +  G
Sbjct: 303 VKFNLPAENGLAGDMEALISKRVYDMAGTLRNVKVWLNDERI---KLTGFKKYVEMYTSG 359

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRG---TVEWAIAWCEENPEITSYCNTILTD 325
           +   ++               G T+    +       E A A  +   +  S+CN+I T 
Sbjct: 360 VNEAIKGSAAKALEAPGSPGNGATKTPIIYEECGKRWEIAFAPSDGQFQQVSFCNSIATT 419

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           +GGTH   +   L   I +   + + K  +++    +       ++  I  P F  QTK 
Sbjct: 420 KGGTHVEHIVKQLVEKIIE--SVNKKKAKLTLKPYQVRNHLWVFVNCLIENPTFDSQTKE 477

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIR 445
            +    ++   +  + + F   +++     + +++ V++ ++ +     ++    K +  
Sbjct: 478 NMTLGMSKFGSKCVMTEEFMKKVMK-----SGVIDSVMDFAKFKEEAALKKTDGSKRSRI 532

Query: 446 KLRLPGKLADCS-QNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVAS 501
              +  + A+ +    A    L + EGDSA   A    +   R N  V PLRGK+LN   
Sbjct: 533 TGIVKLEDANNAGTRKAADCTLILTEGDSAKSLAVAGLSVIGRDNYGVFPLRGKLLN--- 589

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
                                                      D DG+HI  L++ F   
Sbjct: 590 -------------------------------------------DHDGSHIKGLIINFLDY 606

Query: 562 EMYDLIEQ-KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
               L+E    L     P+ ++T+  + +        +K  EE             +KGL
Sbjct: 607 FFPSLLEIPGFLVEFITPIVKVTRKKEELSFFTMPEFEKWKEE--NDDGRGWTSKYYKGL 664

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ--ERA 678
           G   A   K+     +   +         N       + NK    KAD+R ++++  E  
Sbjct: 665 GTSDAKDAKKYFSRMSSHRIKFA--PTQENDRHLIDMAFNK---KKADDRKEWLRGFEPG 719

Query: 679 SFIDD 683
           + +D 
Sbjct: 720 THLDQ 724


>gi|241183497|gb|ACS66883.1| DNA gyrase subunit B [Kribbella aluminosa]
 gi|241183525|gb|ACS66884.1| DNA gyrase subunit B [Kribbella aluminosa]
          Length = 548

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 196/552 (35%), Positives = 303/552 (54%), Gaps = 14/552 (2%)

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           HHL +EV+DNA+DE +AG+ + I V+L  +G + V DNGRGIPV+   +   K  + ++L
Sbjct: 1   HHLVTEVVDNAVDEAMAGFGDRIVVTLLADGGVRVEDNGRGIPVDIV-ESEGKPAVTVVL 59

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKF    Y++SGGLHGVG+SVVNALS +L V V  +  +++Q F+ G+P + L 
Sbjct: 60  TVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSTKLQVDVKLKGKLYTQTFTNGVPDADLA 119

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAE 253
           +        GT ITF     +F     +    L    +  A+L+  ++     ++ +  +
Sbjct: 120 EIG-TSVSNGTTITFWASEDVFETTT-YSYETLATRFREYAFLNKGLELVIRDERPDHFD 177

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
           + G P ++ F +  GL  Y++     R  +  ++ + +      +  ++E A+ W     
Sbjct: 178 EDGKPLEQSFRYDDGLVDYVKYLTGIRETVHRDVISFEA-ATAENTMSLEVALQWSGSFQ 236

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
             + ++ N I T EGGTHE G R ALT  +  + E      K+   +  DD+      I+
Sbjct: 237 ESVHTFANAINTHEGGTHEEGFRAALTSLVNSFGEDQGMIKKKEDRLTGDDIREGLTAII 296

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV + EP+F GQTKTKL + + +  V+  + D    +  QNP E  +++      +  R+
Sbjct: 297 SVKLAEPQFEGQTKTKLGNTEVKGFVQRVVNDKLGAWFEQNPAEGREIIRKASAAASARI 356

Query: 431 RRRKQRE--VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
             RK R+   NRK  +    LPGKLADC        E++IVEGDSAGGSAK  R+   QA
Sbjct: 357 AARKARDLARNRKGLLGGGGLPGKLADCQSTNPEECEVYIVEGDSAGGSAKGGRDPKFQA 416

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           +LP+RGKILNV  A  +++  N +++ ++ ALG      + EE LRY K++IM DADVDG
Sbjct: 417 ILPIRGKILNVEKARIDRVLQNNEVLAIISALGTGIHEDFDEEKLRYHKIVIMADADVDG 476

Query: 549 AHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTK-SVYAHDEEHKQKILEEFKKH 607
            HI +LLLT  ++ M  LIE+ H++   PPL++I    +    A+ +  +  +LE   + 
Sbjct: 477 QHIRTLLLTLLFRFMRPLIERGHVYAAQPPLYKIRWSNQPDELAYTDRERDGLLEAGYEA 536

Query: 608 GKGKIE---ISR 616
           GK   +   I R
Sbjct: 537 GKKLPKENPIQR 548


>gi|118398165|ref|XP_001031412.1| DNA gyrase/topoisomerase IV, A subunit family protein [Tetrahymena
           thermophila]
 gi|89285740|gb|EAR83749.1| DNA gyrase/topoisomerase IV, A subunit family protein [Tetrahymena
           thermophila SB210]
          Length = 1416

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 135/686 (19%), Positives = 255/686 (37%), Gaps = 81/686 (11%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD----------------------- 70
           +   +S  + Y   S      +E + +RP  Y+G  +                       
Sbjct: 2   SKQEKSVEERYQKKS-----QIEHILLRPDSYVGSIENEQKSLWILNKEGTALEEKEIDF 56

Query: 71  EKALHHLFSEVIDNAMDEVIAG----YANLIEVSLDGNGF-LTVVDNGRGIPVENHPKFP 125
             A + +F E+I NA D           + I+V +D     ++V +NG+GIP++ H +  
Sbjct: 57  VPAFYKIFDEIIVNAADNFQRNQDGAPMDTIKVMIDQQNQMISVWNNGQGIPIQIHKEH- 115

Query: 126 NKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFS 185
           N    E+I   L     +D+   ++ GG +G G  + N  S +  V           K  
Sbjct: 116 NIYIPEMIFGHLLTSSNYDDKEEKVVGGRNGFGAKLTNIFSKKFIVECNDDKRKKYYKQE 175

Query: 186 RGIPLSPLEKKEKVRNKRG---TRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSGR 240
               +S   +     NK+G   T +TF PD       + +   A  L K     A +   
Sbjct: 176 WRKNMSERTEPLITENKKGGNFTCVTFYPDLSKFKMQNISDDMANLLRKRVYDMAGIFNN 235

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
               +  +++I  K        F                   I       K         
Sbjct: 236 KVKVYLNNEQIKIKSFSQYVNLF-------------------IPDIEEQYKCYDPTMTSD 276

Query: 301 TVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISD 360
             E  + + +   +  S+ N I T  GG H   +   +   +++  ++ +  + + I   
Sbjct: 277 RWEILVTFSDGQFKQVSFVNGICTSRGGKHVDFVIDKIVERMQE--QILKKNKDLDIKPH 334

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
            +  +    ++  I  P F  QTK  L +  +    +  L + F   ++      T ++E
Sbjct: 335 QIKQNLFIFMNCLIVNPSFDSQTKDTLTTKASAFGSKPELSEKFIKKIL-----GTGIIE 389

Query: 421 WVIERSEERLRRRKQREVNRKTAIRKLRLP--GKLADCSQNIAHGTELFIVEGDSAGGSA 478
            ++ +++ R   +  + +      R   +P      D     +    L + EGDSA   A
Sbjct: 390 QIVSQAKARQNAKLAKTLKGGKKGRITGIPKLDDANDAGTARSENCTLILTEGDSAKALA 449

Query: 479 KQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT--RSQYREEDL 533
                   R N  V PL+GK+LNV  A  ++I  NQ+I ++ + +G     ++    + L
Sbjct: 450 MAGIEVVGRDNYGVFPLKGKLLNVREANKKQIIENQEIQNICKIIGLDPAVQNYENTKQL 509

Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE-QKHLFLISPPLFRITQGTKSVYAH 592
           RY  ++IM D D DG+HI  L++ F +     L + +  L     P+ ++T+G +     
Sbjct: 510 RYGSLMIMADQDSDGSHIKGLVINFIHHFWPSLFKMKGFLKEFITPILKVTKGDEVHSFF 569

Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINK-DLNS 651
             +  +    + K     + ++  +KGLG     + KE   +  K    ++     D N 
Sbjct: 570 TIQDFKNFAAQ-KGDRLKQYKVKYYKGLGTSTDKEAKEYFSNFYKH---QINFQYLDEND 625

Query: 652 LKDTQDSINKLMGTKADERFKFIQER 677
           ++  +   +   G K  ER  ++   
Sbjct: 626 MEAIELGFS---GKKIKERKDWLANY 648


>gi|321398489|emb|CAM69466.2| DNA topoisomerase ii [Leishmania infantum JPCM5]
          Length = 1252

 Score =  353 bits (906), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 135/682 (19%), Positives = 252/682 (36%), Gaps = 74/682 (10%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGG-----------------------TDEKAL 74
           ++    Y           + +  RP MYIG                        T    L
Sbjct: 3   KTVEQIYQKK-----TQHDHILTRPDMYIGTIEPVTDDIWVYDDAENTMKQRKCTWTPGL 57

Query: 75  HHLFSEVIDNAMDEVIAGY--ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
           + +F E++ NA D  +       +I V +    ++ V +NG GIP++ H +  +    E+
Sbjct: 58  YKIFDEILVNAADNKVRDPIGQTVIRVWMTE-NYVRVYNNGEGIPIQKHREH-DLWVPEM 115

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTV--ARQNTIFSQKFSRGIPL 190
           I   L     +D+   +++GG +G G  + N  S +  V    +R    F  K++  +  
Sbjct: 116 IFGHLLTSSNYDDEEAKVTGGRNGFGAKLTNVFSKQFEVETVHSRSRKKFYMKWANNMLQ 175

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
                     +   T +TF PD  +F     F    LL M +    ++G        DK 
Sbjct: 176 HDDPVIVPCDSADYTMVTFYPDFALFHV-DKFSEDMLLMMKRRVYDVAG------CTDKT 228

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
           +             FP  +  Y     E ++   S                 E  +    
Sbjct: 229 LKCFLNDERIACTTFPEYVDLYPTMGEERKAASYSR-----------VNDRWEVCVRVSN 277

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
             P+  S+ N+I T  GGTH   +   +   + + A+  +      +    +       +
Sbjct: 278 IGPQQVSFVNSIATTRGGTHVKYIMDQIISKVVEQAKKKK---KTDVKPHMIRPHIFLFV 334

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           +  I  P F  QTK  L ++ ++      L +    Y++ + I    +     + + E  
Sbjct: 335 NCLIENPGFDSQTKETLNTVKSKFGSTCDLPNSIVDYIMSSGIVERSVEMANSKIAREMA 394

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQ 487
            + +  +  +   I KL    +        +H   L + EGDSA          ++R   
Sbjct: 395 SKMRSSDRKQIMGIPKLDDANE---AGGKHSHRCTLILTEGDSAKTLCTAGLAVKDRDYF 451

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADV 546
            V PLRGK LNV  A  +K+   ++I  +++ +G   R +Y   D LRY  ++IM+D D 
Sbjct: 452 GVFPLRGKPLNVREASLKKLAACEEIQCVMKIMGLDIRQKYENADGLRYGHLMIMSDQDH 511

Query: 547 DGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRIT-QGT----KSVYAHDEEHKQKI 600
           DG+HI  LL+ F +    +L+     L     P+ +   +G     K++         + 
Sbjct: 512 DGSHIKGLLINFIHCFWPNLLRVPGFLQQFITPIVKARPKGRGGAGKAISFFSMPDYFEW 571

Query: 601 LEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660
            +    +     +I  +KGLG   A + +E   + ++  L  VE  +           + 
Sbjct: 572 KKAIGDN-LSNYQIRYYKGLGTSGAEEGREYFENIDRHRLNFVEQEQSEE-----DRIVM 625

Query: 661 KLMGTKADERFKFIQERASFID 682
                + ++R ++I    + ++
Sbjct: 626 AFGKDRVEDRKEWITNFKTNVN 647


>gi|146092354|ref|XP_001470271.1| DNA topoisomerase ii [Leishmania infantum]
          Length = 1253

 Score =  353 bits (906), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 135/682 (19%), Positives = 252/682 (36%), Gaps = 74/682 (10%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGG-----------------------TDEKAL 74
           ++    Y           + +  RP MYIG                        T    L
Sbjct: 3   KTVEQIYQKK-----TQHDHILTRPDMYIGTIEPVTDDIWVYDDAENTMKQRKCTWTPGL 57

Query: 75  HHLFSEVIDNAMDEVIAGY--ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
           + +F E++ NA D  +       +I V +    ++ V +NG GIP++ H +  +    E+
Sbjct: 58  YKIFDEILVNAADNKVRDPIGQTVIRVWMTE-NYVRVYNNGEGIPIQKHREH-DLWVPEM 115

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTV--ARQNTIFSQKFSRGIPL 190
           I   L     +D+   +++GG +G G  + N  S +  V    +R    F  K++  +  
Sbjct: 116 IFGHLLTSSNYDDEEAKVTGGRNGFGAKLTNVFSKQFEVETVHSRSRKKFYMKWANNMLQ 175

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
                     +   T +TF PD  +F     F    LL M +    ++G        DK 
Sbjct: 176 HDDPVIVPCDSADYTMVTFYPDFALFHV-DKFSEDMLLMMKRRVYDVAG------CTDKT 228

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
           +             FP  +  Y     E ++   S                 E  +    
Sbjct: 229 LKCFLNDERIACTTFPEYVDLYPTMGEERKAASYSR-----------VNDRWEVCVRVSN 277

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
             P+  S+ N+I T  GGTH   +   +   + + A+  +      +    +       +
Sbjct: 278 IGPQQVSFVNSIATTRGGTHVKYIMDQIISKVVEQAKKKK---KTDVKPHMIRPHIFLFV 334

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           +  I  P F  QTK  L ++ ++      L +    Y++ + I    +     + + E  
Sbjct: 335 NCLIENPGFDSQTKETLNTVKSKFGSTCDLPNSIVDYIMSSGIVERSVEMANSKIAREMA 394

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQ 487
            + +  +  +   I KL    +        +H   L + EGDSA          ++R   
Sbjct: 395 SKMRSSDRKQIMGIPKLDDANE---AGGKHSHRCTLILTEGDSAKTLCTAGLAVKDRDYF 451

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADV 546
            V PLRGK LNV  A  +K+   ++I  +++ +G   R +Y   D LRY  ++IM+D D 
Sbjct: 452 GVFPLRGKPLNVREASLKKLAACEEIQCVMKIMGLDIRQKYENADGLRYGHLMIMSDQDH 511

Query: 547 DGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRIT-QGT----KSVYAHDEEHKQKI 600
           DG+HI  LL+ F +    +L+     L     P+ +   +G     K++         + 
Sbjct: 512 DGSHIKGLLINFIHCFWPNLLRVPGFLQQFITPIVKARPKGRGGAGKAISFFSMPDYFEW 571

Query: 601 LEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660
            +    +     +I  +KGLG   A + +E   + ++  L  VE  +           + 
Sbjct: 572 KKAIGDN-LSNYQIRYYKGLGTSGAEEGREYFENIDRHRLNFVEQEQSEE-----DRIVM 625

Query: 661 KLMGTKADERFKFIQERASFID 682
                + ++R ++I    + ++
Sbjct: 626 AFGKDRVEDRKEWITNFKTNVN 647


>gi|145522376|ref|XP_001447032.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124414532|emb|CAK79635.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1272

 Score =  352 bits (904), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 131/681 (19%), Positives = 267/681 (39%), Gaps = 71/681 (10%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD---------------------EKA 73
              ++  + Y     + +  +E +  RP  YIG                           
Sbjct: 1   MRQKTIEEQY-----KKMTHIEHILQRPDTYIGSIQRTSEQMWIIQNGKMIQKEIEYVPG 55

Query: 74  LHHLFSEVIDNAMDEVIAG----YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
              +F E++ NA D +         + I+V +     +++ ++G  IPVE H ++     
Sbjct: 56  FFKIFDEILVNAADNLQRDSRQHKQSYIKVDI--GNEISIKNDGFPIPVEIHKEY-QIYV 112

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            E+I      G  FD++   + GG +G G  + N  S E  + V    + F   ++  + 
Sbjct: 113 PELIFGVFLTGSNFDDTEKRVVGGRNGYGAKLTNVYSTEFTLEVCDGKSYFKLVWNNNMS 172

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGD--KAGFDAARLLKMTQSKAYLSGRVKTCWSC 247
              +   ++++      I+++PD K FG         A L +     A + G   + +  
Sbjct: 173 NKQIPIIKQIKKDPYVSISYKPDYKRFGMKEIESDTQALLTRRVYDLAGIYGNKISVYLN 232

Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307
           D++I         + +    G                      K   K       E  ++
Sbjct: 233 DEKIKINSFQKYVDLYLPNEGA--------------------IKIFDKDMTTPRWEVVVS 272

Query: 308 WCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAV 367
           +     +  S+ N I T +GGTH + +   + + I+      +  ++I +    +  S  
Sbjct: 273 YSPTQFQHVSFVNAIYTAKGGTHVNYVTDKIIQEIQNEMNNNKKYKSIEVQKYQIKQSLW 332

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
             ++  I  P F  QTK  + +  ++    N  +        +  +  T ++E + ++++
Sbjct: 333 VFINCLIDNPTFDSQTKENMTTKVSEFGGTNEEKFKVTEKFSK-ALIKTDIIETIFQQAK 391

Query: 428 ERLRRRKQREVN--RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN-- 483
            +   +  +++   +   +  +       D  +  +    L + EGDSA   A    +  
Sbjct: 392 AKADAKLNKQLKGTKTGRLHGIEKLDDANDAGKKNSELCTLILTEGDSAKALAMAGIDIV 451

Query: 484 -RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIM 541
            R    V PL+GK+LNV  A  ++I  N++I +L++ +G +   QY +   LRY  V+IM
Sbjct: 452 GRDRYGVFPLKGKLLNVREASLKQILQNEEIENLIKIIGLQKERQYTDLKSLRYGSVMIM 511

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIE-QKHLFLISPPLFRITQGTKSVYAHDEEHKQKI 600
           TD D+DG+HI  L++ F +     L++ +  L     PL + T+G +++     +   K 
Sbjct: 512 TDQDIDGSHIKGLIINFIHHFWPSLVKYRGFLKEFVTPLIKATKGNQTIPFFTVQDFNKF 571

Query: 601 LEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660
            +E         +I  +KGLG     + +E   +    T ++   + D +         N
Sbjct: 572 AQE---EDIKTWKIKYYKGLGTSDDQEAQEYFKNLRTHT-IQFRYDGDDD-DNSIDLCFN 626

Query: 661 KLMGTKADERFKFIQERASFI 681
           K    KA++R +++ +    +
Sbjct: 627 K---KKANDRKQWLAQYNHDL 644


>gi|6729221|dbj|BAA89732.1| DNA gyrase subunit B [Micromonospora inositola]
          Length = 472

 Score =  352 bits (904), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 166/477 (34%), Positives = 258/477 (54%), Gaps = 8/477 (1%)

Query: 67  GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           G T E+ LHHL  EV+DNA+DE +AGY ++I+V L  +G + V DNGRG PV+ HPK   
Sbjct: 1   GSTGERGLHHLVQEVVDNAVDEALAGYCDIIDVVLLADGGVRVTDNGRGFPVDLHPKL-K 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           K  +E+ LT LHAGGKFD   Y +SGGLHGVG+SVVNALS  + V + +   ++ Q+++ 
Sbjct: 60  KPGVEVALTVLHAGGKFDGKAYAVSGGLHGVGVSVVNALSTRMEVEIHKSGFVWRQQYTN 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
             P    +   +  N+ G+ + F PD  +F     FD   + +  Q  A+L+  +     
Sbjct: 120 SKPSPLEK--GETTNRTGSAVAFWPDADVFET-VDFDFQTIYRRLQEMAFLNRGLTIHLL 176

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
            ++    + G P +  F +  G+  +++    +++ I   +   + E        VE A+
Sbjct: 177 DERVAEGEEGKPREVTFLYKDGIADFVRHLNASKNPIHKTVVQFEAE-DVEEGMAVEIAM 235

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR-AISIISDDLMI 364
            W E     + ++ NTI T EGGTHE G R ALT  + +Y    +  +    +  +D+  
Sbjct: 236 QWNESYGESVYTFANTINTHEGGTHEEGFRAALTSVVNRYGAEKKLLKGDEKLSGEDIRE 295

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE-WVI 423
               I+SV +  P+F GQTKTKL +   +  V+    +    +  +NP EA  +++    
Sbjct: 296 GLAAIISVKLTNPQFEGQTKTKLGNTPVKSFVQRVCNEWLVDWFDRNPAEAKTIIQKASQ 355

Query: 424 ERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483
                   ++ ++   RK+ +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+
Sbjct: 356 AARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRD 415

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
              QA+LP+RGKILNV  A  +++  N ++  L+ ALG      +  E LRY K+++
Sbjct: 416 PRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGIHDDFDIEKLRYHKIVL 472


>gi|170591240|ref|XP_001900378.1| DNA gyrase/topoisomerase IV, A subunit family protein [Brugia
           malayi]
 gi|158591990|gb|EDP30592.1| DNA gyrase/topoisomerase IV, A subunit family protein [Brugia
           malayi]
          Length = 1178

 Score =  352 bits (904), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 142/674 (21%), Positives = 239/674 (35%), Gaps = 71/674 (10%)

Query: 47  SSIRILEGLEPVRMRPGMYIGGT---DE---------------------KALHHLFSEVI 82
              + L  L+ +  RP  YIG T   DE                       L  +F E++
Sbjct: 63  EKYQRLTPLKHILYRPDSYIGPTFLSDEQPIYVYDDITKQILKKEARIVPGLLKIFDEIL 122

Query: 83  DNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140
            NA D          I +++D     +++ +NGRGIPVE HP+        +I  TL   
Sbjct: 123 VNAADNKRRDPQMTTIAINIDKERNTISIWNNGRGIPVEIHPR-EGIYVPTMIFGTLFTS 181

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN----TIFSQKFSRGIPLSPLEKK 196
             +D+S  +I GG +G G  + N  S E  V    +          + +      P+   
Sbjct: 182 SNYDDSELKIVGGRNGFGAKLCNIFSTEFSVETCTKQSGLRFFQCWRNNMNDVDDPIISD 241

Query: 197 EKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
                   T +TF+PD                +++     A     V    +  K     
Sbjct: 242 ASTNASDYTCVTFKPDLSKFKLSTLDEDTIQVMIRRIVDIAGTLDGVNVFLNGTK----- 296

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE 314
                 E   F   +K +     E+    +   +        +     + A+A  +    
Sbjct: 297 -----IEVSGFKDYVKLFSTYTGESVENSTVPSYC-------SVNDRWQIAVARSDTGYN 344

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFI 374
             S+ N I T +GG H   +   +   +K             I +  +       ++  I
Sbjct: 345 HISFVNNINTLKGGRHVDYIVNQIVSRLKHEINQRYGCDKF-ISAHQIKNRLHIFVNSLI 403

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
             P F  Q+K  L +          + + F    +++      LL  + ++    L R  
Sbjct: 404 ENPAFESQSKEYLTTSVKNFGSTCIVPESFYENFIKDSDIIHHLLCDISQQHTTSLNRSM 463

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLP 491
            R +   + +         AD          L I EGDSA   A        R    V P
Sbjct: 464 NRSLWDLSKLE------DAADAGTKNGCNCTLIITEGDSAKALAVAGLAVIGRKQYGVFP 517

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED----LRYEKVIIMTDADVD 547
           +RGK+ NV    ++    N +I  LV+ LG +    Y   +    LRY +++IMTD D D
Sbjct: 518 IRGKLTNVRGMDAKMAVENAEISALVRILGLKFGENYSSHEKLKSLRYGRLLIMTDQDPD 577

Query: 548 GAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607
           G+HI  L++ F +     L++  ++     PL +  +G+     +     +K   E    
Sbjct: 578 GSHIKGLIVNFLHVYWPSLLKANYVSYFITPLLKAKRGSDIKSFYSTADYEKWRAENPDS 637

Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667
              K  I  +KGLG   A + +E   D  + T+    I     S +  + +  K    KA
Sbjct: 638 --VKYSIKYYKGLGTSSAKEAREYFNDIERHTVNF--IYDGKISDESIELAFAK---NKA 690

Query: 668 DERFKFIQERASFI 681
           D+R  +I E +  +
Sbjct: 691 DDRKVWIAESSKLL 704


>gi|7437445|pir||T10466 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) II - malaria
           parasite (Plasmodium falciparum)
 gi|3980316|emb|CAA55900.1| DNA topoisomerase (ATP-hydrolysing) [Plasmodium falciparum]
          Length = 1397

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 133/726 (18%), Positives = 259/726 (35%), Gaps = 94/726 (12%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----------------------E 71
             N++  + Y   S      +E + +RP  YIG  +                        
Sbjct: 2   AKNKTIEERYQKKS-----QIEHILLRPDTYIGSVEMHTQLLWVWNKEKNRMVQKNITYV 56

Query: 72  KALHHLFSEVIDNAMD------EVIAGYANLIEVSLDGNG-FLTVVDNGRGIPVENHPKF 124
             L+ +F E+I NA D      E        I++ ++     ++V ++G GIPV+ H + 
Sbjct: 57  PGLYKIFDEIIVNAADVKAREKEKSENPMTCIKIEINKENKRISVYNDGEGIPVDIHKEM 116

Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQ--NTIFSQ 182
            N     +I   L     +D++   I+GG +G G  + N  S E  V          F  
Sbjct: 117 -NIYVPHMIFGELLTSDNYDDAEDRITGGRNGFGAKLTNIFSKEFIVQCGDSSRKKEFKM 175

Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSGR 240
            +S  +        +    K   ++TF+PD       +      + L K     A     
Sbjct: 176 TWSDNMSKFSEPHIKNYNGKDYVKVTFKPDLNKFGMTEMDDDIESLLFKRVYDLAGTCSV 235

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL----------------------- 277
            +   +  +   + +                  + +                        
Sbjct: 236 -RVYLNGQRLAVKDFKSYVDLYLKDNSNDNKNNKGQNDNNNNNNNNNDENANQNNDNLDV 294

Query: 278 ----------ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT---SYCNTILT 324
                       ++  ++     + E    H     W I   + +       S+ N+I T
Sbjct: 295 SLSNEPADGTPTKNNNNNNNNNDEDEIVKIHEKQHRWEIVVSKSDGSQFQQVSFVNSICT 354

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
            +GG+H + +   L   + K     +NK  + I S  +       ++  I  P F  QTK
Sbjct: 355 TKGGSHVNYIVEQLLSSLSK-KANAKNKGGMEIKSGHIRNHLWVFVNCLIVNPTFDSQTK 413

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI 444
             L +   +   +  L D   + ++++PI +  LL    +   E  ++ K      +  I
Sbjct: 414 ETLTTKPVKFGSKCILSDKTINNVLKSPILSNILLWAQAKAQVELKKKMKAGSSKARERI 473

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVAS 501
             +       D     +    L + EGDSA  S     +   R    V PL+GK+LNV  
Sbjct: 474 IGIPKLEDANDAGSKYSQECTLILTEGDSAKTSCLAGLSIVGRDKYGVFPLKGKLLNVRD 533

Query: 502 AGSEKIRNNQQIMDLVQALGCRT--RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
           A  +++ +N++I ++ + +G     +++   + LRY  ++IMTD D DG+HI  LL+   
Sbjct: 534 ASFKQLMDNKEIQNIFRIMGLDITDKNKDDIKGLRYGSLMIMTDQDYDGSHIKGLLINMI 593

Query: 560 YQEMYDLIEQ-KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           ++    L++    L     P+ ++ +G++          ++  E          +I  +K
Sbjct: 594 HKFWPSLLKHKGFLSEFVTPIVKVQKGSQEYSFFTIAEYEQWKE---NTNLLGWKIKYYK 650

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER- 677
           GLG     + K+   D     ++   +            + +K    + ++R  ++Q   
Sbjct: 651 GLGTSTDREFKQYFSDIKNHKIMF--LWTGDRDGDSIDMAFSK---KRIEDRKLWLQNFI 705

Query: 678 -ASFID 682
             S++D
Sbjct: 706 LGSYVD 711


>gi|730968|sp|P41001|TOP2_PLAFK RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
          Length = 1398

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 133/726 (18%), Positives = 259/726 (35%), Gaps = 94/726 (12%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----------------------E 71
             N++  + Y   S      +E + +RP  YIG  +                        
Sbjct: 2   AKNKTIEERYQKKS-----QIEHILLRPDTYIGSVEMHTQLLWVWNKEKNRMVQKNITYV 56

Query: 72  KALHHLFSEVIDNAMD------EVIAGYANLIEVSLDGNG-FLTVVDNGRGIPVENHPKF 124
             L+ +F E+I NA D      E        I++ ++     ++V ++G GIPV+ H + 
Sbjct: 57  PGLYKIFDEIIVNAADVKAREKEKSENPMTCIKIEINKENKRISVYNDGEGIPVDIHKEM 116

Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQ--NTIFSQ 182
            N     +I   L     +D++   I+GG +G G  + N  S E  V          F  
Sbjct: 117 -NIYVPHMIFGELLTSDNYDDAEDRITGGRNGFGAKLTNIFSKEFIVQCGDSSRKKEFKM 175

Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSGR 240
            +S  +        +    K   ++TF+PD       +      + L K     A     
Sbjct: 176 TWSDNMSKFSEPHIKNYNGKDYVKVTFKPDLNKFGMTEMDDDIESLLFKRVYDLAGTCSV 235

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL----------------------- 277
            +   +  +   + +                  + +                        
Sbjct: 236 -RVYLNGQRLAVKDFKSYVDLYLKDNSNDNKNNKGQNDNNNNNNNNNDENANQNNDNLDV 294

Query: 278 ----------ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT---SYCNTILT 324
                       ++  ++     + E    H     W I   + +       S+ N+I T
Sbjct: 295 SLSNEPADGTPTKNNNNNNNNNDEDEIVKIHEKQHRWEIVVSKSDGSQFQQVSFVNSICT 354

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
            +GG+H + +   L   + K     +NK  + I S  +       ++  I  P F  QTK
Sbjct: 355 TKGGSHVNYIVEQLLSSLSK-KANAKNKGGMEIKSGHIRNHLWVFVNCLIVNPTFDSQTK 413

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI 444
             L +   +   +  L D   + ++++PI +  LL    +   E  ++ K      +  I
Sbjct: 414 ETLTTKPVKFGSKCILSDKTINNVLKSPILSNILLWAQAKAQVELKKKMKAGSSKARERI 473

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVAS 501
             +       D     +    L + EGDSA  S     +   R    V PL+GK+LNV  
Sbjct: 474 IGIPKLEDANDAGSKYSQECTLILTEGDSAKTSCLAGLSIVGRDKYGVFPLKGKLLNVRD 533

Query: 502 AGSEKIRNNQQIMDLVQALGCRT--RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
           A  +++ +N++I ++ + +G     +++   + LRY  ++IMTD D DG+HI  LL+   
Sbjct: 534 ASFKQLMDNKEIQNIFRIMGLDITDKNKDDIKGLRYGSLMIMTDQDYDGSHIKGLLINMI 593

Query: 560 YQEMYDLIEQ-KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           ++    L++    L     P+ ++ +G++          ++  E          +I  +K
Sbjct: 594 HKFWPSLLKHKGFLSEFVTPIVKVQKGSQEYSFFTIAEYEQWKE---NTNLLGWKIKYYK 650

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER- 677
           GLG     + K+   D     ++   +            + +K    + ++R  ++Q   
Sbjct: 651 GLGTSTDREFKQYFSDIKNHKIMF--LWTGDRDGDSIDMAFSK---KRIEDRKLWLQNFI 705

Query: 678 -ASFID 682
             S++D
Sbjct: 706 LGSYVD 711


>gi|10039307|dbj|BAB13314.1| DNA gyrase B subunit [Capnocytophaga gingivalis]
          Length = 484

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 189/489 (38%), Positives = 278/489 (56%), Gaps = 20/489 (4%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+SVVNALS  L  TV R   I+ Q++ RGI L  +++K K    R
Sbjct: 1   DKGSYKVSGGLHGVGVSVVNALSTHLTATVFRDGKIWEQEYERGIALYQVKEKGKTEK-R 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT++TF PD +IF     F+   L    +  A+L+  +    +  +   EK   P  + F
Sbjct: 60  GTKVTFLPDTEIFQQTVEFNYDILANRIRELAFLNKGIHITLTDLRHQDEKG-APISQTF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTI 322
           Y   GL+ ++Q    NR+ I  +I   + EK       VE A+ + +   E    Y N I
Sbjct: 119 YSEKGLEEFIQYLDGNRTPIIKKIIAMEGEKNEIP---VEVAMIYNDSFNENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--------NKRAISIISDDLMISAVGILSVFI 374
            T EGGTH  G R+ LTR +K YA+ +          K  + I  DD       I+SV +
Sbjct: 176 NTHEGGTHLQGFRMGLTRTLKNYADKSGLLEKASKDKKNPLEISGDDFREGLTAIISVKV 235

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP+F GQTKTKL + +    V  A+ D  + YL +NP +A  ++  VI  ++ RL  +K
Sbjct: 236 AEPQFEGQTKTKLGNREVTAAVSQAVSDMLESYLEENPEDAKTIVNKVILAAQARLAAKK 295

Query: 435 QREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            RE  ++ + +    LP KLADC        ELF+VEGDSAGG+AKQ R++  QA+LPLR
Sbjct: 296 AREAVQRKSPMGGAGLPNKLADCQDKNPENCELFLVEGDSAGGTAKQGRDQKFQAILPLR 355

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDG 548
           GKILNV  A   ++  N++I ++  ALG    ++          LRY K+IIM+DADVDG
Sbjct: 356 GKILNVEKAMQHRVFENEEIKNIYTALGVTIGTEEDAKALNISKLRYHKIIIMSDADVDG 415

Query: 549 AHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +HIA+L+LTFF++ M +LIE+ H+++ +PPL+ + QG K  YA  +E +  I +EF +  
Sbjct: 416 SHIATLILTFFFRYMRELIEEGHVYIATPPLYLLKQGKKEQYAWSDEERDAITKEFYEQA 475

Query: 609 KGKIEISRF 617
           + K+ + R+
Sbjct: 476 QTKVAVQRY 484


>gi|18916466|dbj|BAB85518.1| DNA gyrase subunit B [Bradyrhizobium japonicum]
          Length = 465

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 189/475 (39%), Positives = 275/475 (57%), Gaps = 12/475 (2%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DNA+DE +AG+A  ++V L+ +  +TV D+GRGIPV+ H K   
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHATRVDVVLNADNSVTVRDDGRGIPVDIH-KGEG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALS +L + + R +     +F+ 
Sbjct: 60  ISAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAH 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  ++PL+       +RGT +TF   P+ F +   +D A L    +  A+L+  V    S
Sbjct: 120 GDAVAPLKVVGDAPGRRGTEVTFLASPETFKNI-EYDFATLEHRLRELAFLNSGVNIALS 178

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   EK      EE ++ GG++ +++    N+  I       + +  G     VE A+
Sbjct: 179 DMRHAVEKR-----EEMHYSGGVEEFVKYLDRNKKAIVPAPIMVRADANGI---GVEAAL 230

Query: 307 AWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
            W +   E    + N I   +GGTH +G R ALTR +  YAE    K  I++  DD    
Sbjct: 231 WWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQVNGYAEANAKKEKIALTGDDCREG 290

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              +LSV + +P+F+ QTK KLVS + +  VEN L +    +  ++P EA  ++  VI+ 
Sbjct: 291 LTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVLNEALQAWFEEHPSEAKMIVGKVIQA 350

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
           +  R   RK RE+ RK+ +    LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR 
Sbjct: 351 AAAREAARKARELTRKSPLSVSSLPGKLADCQEKDPAKSELFIVEGDSAGGSAKQGRNRE 410

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            QAVLPLRGKILNV     +K+  ++QI  L+ ALG     ++  + LRY K+I+
Sbjct: 411 FQAVLPLRGKILNVERVRPDKMLGSEQIGTLITALGTGISDEFSIDKLRYHKIIV 465


>gi|226323237|ref|ZP_03798755.1| hypothetical protein COPCOM_01009 [Coprococcus comes ATCC 27758]
 gi|225208427|gb|EEG90781.1| hypothetical protein COPCOM_01009 [Coprococcus comes ATCC 27758]
          Length = 510

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 162/530 (30%), Positives = 257/530 (48%), Gaps = 34/530 (6%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           + V ++R   +   ++ RGIP+  LE        K +   GT + F PDP IF     F 
Sbjct: 1   MDVKISRDGAVHHDRYERGIPVVELEDGLLPVIGKTKK-TGTCVNFLPDPTIFEKTR-FK 58

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              +       AYL+  +   ++  ++  E+        ++ P G+  +++     + +I
Sbjct: 59  EEEIKSRLHETAYLNPELTIIFTDKRKTQEERIE-----YHEPDGIIGFIKDLNSKKEVI 113

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLRVALTRGI 342
              ++  K E +G     VE A  +  E +  +  +CN I   EGGTH +G +   T  +
Sbjct: 114 HDPVYY-KGEAEGI---EVEVAFQYVNEFHENVLGFCNNIYNAEGGTHLTGFKTTFTTIM 169

Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
            +YA        +  +    D+      I+S+   +P F GQTKTKL + DA +      
Sbjct: 170 NQYAREIGVLKDKDANFTGADVRNGMTAIVSIKHPDPRFEGQTKTKLDNQDAAKATGKVT 229

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
            D    +  +N     K+L    + ++ R    K +              GKLA+C    
Sbjct: 230 SDEIPRFFDRNLETLKKVLSCAEKAAKIRKTEEKAKTNLLTRQKYSFDSNGKLANCESRD 289

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
           A   E+FIVEGDSAGGSAK AR+R  QA+LP+RGKILNV  A  +K+  N +I  ++ A 
Sbjct: 290 ASKCEIFIVEGDSAGGSAKTARDRMYQAILPIRGKILNVEKASIDKVLANAEIKTMINAF 349

Query: 521 GCR----TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           GC       + +    LRY+K+IIM DADVDGAHI++LLLT FY+ M +LI + H+++  
Sbjct: 350 GCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIYEGHVYVAM 409

Query: 577 PPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
           PPL++   +  +  Y +D++  ++  +           + R+KGLGEM A QL ET ++ 
Sbjct: 410 PPLYKAMPKKGEEEYLYDDKALERYRKTHSD-----FTLQRYKGLGEMDAEQLWETTLNP 464

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
             R + R+EI     +   T+     LMGT+   R  FI E A+  + + 
Sbjct: 465 ETRMMKRIEIEDARMASGVTE----MLMGTEVPPRRAFIYENATEAE-LD 509


>gi|124809097|ref|XP_001348490.1| DNA topoisomerase II, putative [Plasmodium falciparum 3D7]
 gi|23497385|gb|AAN36929.1|AE014821_16 DNA topoisomerase II, putative [Plasmodium falciparum 3D7]
          Length = 1472

 Score =  351 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 133/726 (18%), Positives = 259/726 (35%), Gaps = 94/726 (12%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----------------------E 71
             N++  + Y   S      +E + +RP  YIG  +                        
Sbjct: 2   AKNKTIEERYQKKS-----QIEHILLRPDTYIGSVEMHTQLLWVWNKEKNRMVQKNITYV 56

Query: 72  KALHHLFSEVIDNAMD------EVIAGYANLIEVSLDGNG-FLTVVDNGRGIPVENHPKF 124
             L+ +F E+I NA D      E        I++ ++     ++V ++G GIPV+ H + 
Sbjct: 57  PGLYKIFDEIIVNAADVKAREKEKSENPMTCIKIEINKENKRISVYNDGEGIPVDIHKEM 116

Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQ--NTIFSQ 182
            N     +I   L     +D++   I+GG +G G  + N  S E  V          F  
Sbjct: 117 -NIYVPHMIFGELLTSDNYDDAEDRITGGRNGFGAKLTNIFSKEFIVQCGDSSRKKEFKM 175

Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSGR 240
            +S  +        +    K   ++TF+PD       +      + L K     A     
Sbjct: 176 TWSDNMSKFSEPHIKNYNGKDYVKVTFKPDLNKFGMTEMDDDIESLLFKRVYDLAGTCSV 235

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL----------------------- 277
            +   +  +   + +                  + +                        
Sbjct: 236 -RVYLNGQRLAVKDFKSYVDLYLKDNSNDNKNNKGQNDNNNNNNNNNDENANQNNDNLDV 294

Query: 278 ----------ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT---SYCNTILT 324
                       ++  ++     + E    H     W I   + +       S+ N+I T
Sbjct: 295 SLSNEPADGTPTKNNNNNNNNNDEDEIVKIHEKQHRWEIVVSKSDGSQFQQVSFVNSICT 354

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
            +GG+H + +   L   + K     +NK  + I S  +       ++  I  P F  QTK
Sbjct: 355 TKGGSHVNYIVEQLLSSLSK-KANAKNKGGMEIKSGHIRNHLWVFVNCLIVNPTFDSQTK 413

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI 444
             L +   +   +  L D   + ++++PI +  LL    +   E  ++ K      +  I
Sbjct: 414 ETLTTKPVKFGSKCILSDKTINNVLKSPILSNILLWAQAKAQVELKKKMKAGSSKARERI 473

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVAS 501
             +       D     +    L + EGDSA  S     +   R    V PL+GK+LNV  
Sbjct: 474 IGIPKLEDANDAGSKYSQECTLILTEGDSAKTSCLAGLSIVGRDKYGVFPLKGKLLNVRD 533

Query: 502 AGSEKIRNNQQIMDLVQALGCRT--RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
           A  +++ +N++I ++ + +G     +++   + LRY  ++IMTD D DG+HI  LL+   
Sbjct: 534 ASFKQLMDNKEIQNIFRIMGLDITDKNKDDIKGLRYGSLMIMTDQDYDGSHIKGLLINMI 593

Query: 560 YQEMYDLIEQ-KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           ++    L++    L     P+ ++ +G++          ++  E          +I  +K
Sbjct: 594 HKFWPSLLKHKGFLSEFVTPIVKVQKGSQEYSFFTIAEYEQWKE---NTNLLGWKIKYYK 650

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER- 677
           GLG     + K+   D     ++   +            + +K    + ++R  ++Q   
Sbjct: 651 GLGTSTDREFKQYFSDIKNHKIMF--LWTGDRDGDSIDMAFSK---KRIEDRKLWLQNFI 705

Query: 678 -ASFID 682
             S++D
Sbjct: 706 LGSYVD 711


>gi|160558667|gb|ABX45022.1| DNA gyrase subunit B [Streptomyces sp. IMBJ01]
          Length = 510

 Score =  351 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 180/512 (35%), Positives = 271/512 (52%), Gaps = 23/512 (4%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD   Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL + E 
Sbjct: 1   AGGKFDGGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGHRWTQDYKLGVPTAPLAQHEA 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE----- 253
                GT +TF  D  IF     +    L +  Q  A+L+  +    + ++E A+     
Sbjct: 61  TEE-TGTTVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLTLKLTDERESAKATAGA 118

Query: 254 ---------KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
                    +        +++  G+  +++     +  +  +       +      + E 
Sbjct: 119 DSADAVEPAEEETARTVTYHYENGIVDFVKYLNSRKGDVIHQSVIDIEAEDKDRLLSAEI 178

Query: 305 AIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDD 361
           A+ W  +  E + S+ N I T EGGTHE G R ALT  + +YA   +   ++  ++  +D
Sbjct: 179 AMQWNTQYSEGVYSFANAIHTHEGGTHEEGFRAALTSLVNRYARDKKLLREKDDNLTGED 238

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
           +      I+SV + EP+F GQTKTKL + +A+  V+  + +    +  +NP EA  ++  
Sbjct: 239 VREGHTAIISVKLGEPQFEGQTKTKLGNTEAKTFVQKVVHEQLTDWFDRNPNEAADIIRK 298

Query: 422 VIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
            I  S  R+  RK R++ R+  +     LPGKL+DC  N     E+FIVEGDSAGGSAK 
Sbjct: 299 GIAASTARVAARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKS 358

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            RN   QA+LP+RGKILNV  A  +KI  N ++  L+ A G      +  E LRY K+I+
Sbjct: 359 GRNPMYQAILPIRGKILNVEKARIDKILQNTEVQALISAFGTGVHEDFDIEKLRYHKIIL 418

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQK 599
           M DADVDG HI +LLLTF ++ M  L+E  H++L  PPL++I  G     YA+ +  +  
Sbjct: 419 MADADVDGQHINTLLLTFLFRFMRPLVEAGHVYLSRPPLYKIKWGRDDFEYAYSDRERDA 478

Query: 600 ILEEFKKHGK--GKIEISRFKGLGEMLASQLK 629
           ++   K++GK   +  I RFKG GEM A+QL 
Sbjct: 479 LVALGKQNGKRIKEDSIQRFKGFGEMNATQLW 510


>gi|315940105|gb|ADU56231.1| DNA gyrase subunit B [Nocardia gamkensis]
          Length = 491

 Score =  351 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 178/499 (35%), Positives = 271/499 (54%), Gaps = 35/499 (7%)

Query: 61  RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           RPGMYIG T E+ LHHL  EV+DN++DE +AGYA  +EV+L  +G + VVD+GRGIPV  
Sbjct: 1   RPGMYIGSTGERGLHHLIWEVVDNSVDEAMAGYATKVEVTLLADGGVEVVDDGRGIPVAM 60

Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
           H +     T+E+++T LHAGGKFD+ +Y +SGGLHGVGISVVNALS  L   +      +
Sbjct: 61  HAQ--GIPTIEVVMTQLHAGGKFDSDSYAVSGGLHGVGISVVNALSSRLEAEIDHDGYHW 118

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
           SQ +   +P      + +   K GT I F  DP+IF     ++   + +  Q  A+L+  
Sbjct: 119 SQTYKDAVPGKL--IQGEPTKKTGTTIRFWADPEIFET-TTYNFETVARRLQEMAFLNKG 175

Query: 241 VKTCWSCDK------------------EIAEKYGIP-----EKEEFYFPGGLKTYLQTKL 277
           +    + ++                  + AE+   P     +   +++PGGL+ +++   
Sbjct: 176 LTIKLTDERVSDSDVTDEVVSETAEAPKHAEEGTAPAEHKVKTRTYHYPGGLEDFVRHIN 235

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
             +  I + +     +  G     +E A+ W       + ++ NTI T EGGTHE G R 
Sbjct: 236 RTKQPIHNSVVGFTGKGTGH---ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRA 292

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALT  + KYA+  +   ++  ++  DD+      I+SV + EP+F GQTKTKL + + + 
Sbjct: 293 ALTTVVNKYAKDKRLIKEKDGNLTGDDIREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKS 352

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            V+    +   H+   NP +A  ++   +  ++ R+  RK RE V RK+A     LPGKL
Sbjct: 353 FVQRTCNEHLTHWFEANPADAKTIVNKAVSSAQARVAARKARELVRRKSATDLGGLPGKL 412

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC       +E++IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +K+  N ++
Sbjct: 413 ADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDKVLKNNEV 472

Query: 514 MDLVQALGCRTRSQYREED 532
             ++ A G     ++    
Sbjct: 473 QSIITAFGTGIHDEFDISK 491


>gi|18147169|dbj|BAB83065.1| DNA gyrase subunit B [Alcanivorax sp. ST-T3]
 gi|324039432|dbj|BAJ78469.1| DNA gyrase subunit B [Alcanivorax sp. ST-TB]
 gi|324039434|dbj|BAJ78470.1| DNA gyrase subunit B [Alcanivorax sp. ST-TC]
 gi|324039438|dbj|BAJ78472.1| DNA gyrase subunit B [Alcanivorax sp. ST-M1]
 gi|324039440|dbj|BAJ78473.1| DNA gyrase subunit B [Alcanivorax sp. ST-M2]
 gi|324039442|dbj|BAJ78474.1| DNA gyrase subunit B [Alcanivorax sp. ST-M3]
 gi|324039444|dbj|BAJ78475.1| DNA gyrase subunit B [Alcanivorax sp. ST-M4]
 gi|324039446|dbj|BAJ78476.1| DNA gyrase subunit B [Alcanivorax sp. ST-T1]
 gi|324039448|dbj|BAJ78477.1| DNA gyrase subunit B [Alcanivorax sp. ST-T2]
 gi|324039450|dbj|BAJ78478.1| DNA gyrase subunit B [Alcanivorax sp. ST-T4]
 gi|324039460|dbj|BAJ78483.1| DNA gyrase subunit B [Alcanivorax sp. ST-T3]
          Length = 471

 Score =  351 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 189/484 (39%), Positives = 279/484 (57%), Gaps = 20/484 (4%)

Query: 66  IGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKF 124
           IG TD+   LHH+  EV+DN++DE +AG+ + I+V +  +  +++ DNGRGIP E H + 
Sbjct: 1   IGDTDDGTGLHHMVFEVVDNSIDEALAGFCSEIKVVIHPDESMSIQDNGRGIPTEMHEE- 59

Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184
              S  E+I+T LHAGGKFD++TY++SGGLHGVG+SVVNALS+EL +T+ R   +  Q +
Sbjct: 60  EGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIY 119

Query: 185 SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244
           + G+P  PLE      +  GT + FRP P+ F +   F    L K  +  ++L+  V+  
Sbjct: 120 NHGVPAKPLEVVG-TTDSSGTAVHFRPSPETFSN-IKFHYDILAKRLRELSFLNSGVRIH 177

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVE 303
              ++   E       + F + GGL  ++     N++ ++       + E+ G     VE
Sbjct: 178 LMDERSGDE-------DVFEYEGGLSAFVSYLNTNKTPLNQVFHFNYEREEDGI---AVE 227

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISD 360
            A+ W +     I  + N I   +GGTH +G R ALTR +  Y +      K   S   D
Sbjct: 228 VAMQWNDSYQENIFCFTNNIPQRDGGTHLAGFRAALTRTLNSYMDKEGFLKKEKASPSGD 287

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D       ++SV + +P+F+ QTK KLVS + +  VE  + D F  YL++NP EA  +++
Sbjct: 288 DAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGDLFQDYLLENPGEARSIVQ 347

Query: 421 WVI-ERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
            +I         R+ +    RK A+    LPGKLADC Q     +EL+IVEGDSAGGSAK
Sbjct: 348 KIIDAARARDAARKAREMTRRKGALDIAGLPGKLADCQQKDPALSELYIVEGDSAGGSAK 407

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
           Q R+R NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  E LRY ++
Sbjct: 408 QGRDRKNQAILPLKGKILNVEKARFDKMLSSQEVGTLITALGCGIGRDEYNIEKLRYHRI 467

Query: 539 IIMT 542
           IIMT
Sbjct: 468 IIMT 471


>gi|254570861|ref|XP_002492540.1| Essential type II topoisomerase [Pichia pastoris GS115]
 gi|238032338|emb|CAY70361.1| Essential type II topoisomerase [Pichia pastoris GS115]
          Length = 1344

 Score =  350 bits (897), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 149/715 (20%), Positives = 269/715 (37%), Gaps = 80/715 (11%)

Query: 12  LPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD- 70
            PP S GS+    ++G    S A  N + SD Y     + L  LE +  RP  YIG  + 
Sbjct: 36  TPPASNGSAVNNSENGTTRSSTA-NNVNVSDQY-----QKLSQLEHILKRPDTYIGSVEK 89

Query: 71  ----------------------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGF 106
                                    L  +F E++ NA D  I       IEV++      
Sbjct: 90  HESEQWIYNKETESMERKVVSIVPGLFKIFDEILVNAADNKIRDPSMKNIEVTIKPEENL 149

Query: 107 LTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALS 166
           + V ++G+                E+I   L     +++   +++GG +G G  + N  S
Sbjct: 150 IEVKNDGK----------------ELIFGNLLTSSNYNDDQKKVTGGRNGYGAKLCNIFS 193

Query: 167 DELHVTVARQN--TIFSQKFSRGIPLSPLEKKEKVRNKR-GTRITFRPDPKIFGDK--AG 221
            E  V    ++   +++Q++S+ +  +     + ++     T+++FRPD   F       
Sbjct: 194 TEFIVETYDKSSGKLYTQRWSQNMGKTDKPVIKSIKKATEYTKVSFRPDLAKFNMTELDE 253

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
                L +           +    + +K     +    +            ++T+  +  
Sbjct: 254 DILGVLRRRVFDLCGSVRDISVKLNGEKLKIRNFKQYVEMYVKALEHKNDPIKTEDSSLL 313

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
              S     +T    T     E A A  +      S+ N+I T  GGTH + +   + + 
Sbjct: 314 PPPSSSSPSQTIVYQTLNDRWEIAFAVSDSTFNQVSFVNSIATTSGGTHVNFIADQIVKK 373

Query: 342 IKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
           I+K  +    K  I      +  +    ++  +  P F  QTK +L +  +Q   +    
Sbjct: 374 IEKEIKTKNKKAMIK--PFQIKNNMFLFINCLVENPAFTSQTKEQLTTRASQFGGKKTEV 431

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIA 461
                  +        +L+     +++ L++      NR T   KL    K         
Sbjct: 432 PDDFIKKILRTGIVDAILDIAAMNADKALKKNDGSRKNRITGYPKLEDANK---AGTKEG 488

Query: 462 HGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
           +   L + EGDSA   A        R    V PLRGK+LNV  A +++I  N +I  + Q
Sbjct: 489 YKCTLILTEGDSASSLAVAGLAVVGRDYYGVYPLRGKMLNVREASADQIMKNAEIQAIKQ 548

Query: 519 ALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK-HLFL 574
            +G + +  Y  E+   LRY  ++IMTD D DG+HI  L++ F       L++    L  
Sbjct: 549 IMGFQHKKNYTPENINSLRYGHIMIMTDQDHDGSHIKGLIINFLESSFPGLLKVPNFLLE 608

Query: 575 ISPPLFRIT-----QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
              P+ ++T     +  K +  +     +   E+  +  K K     +KGLG  LA +++
Sbjct: 609 FITPIVKVTITSGPEKRKVIPFYSMPEYEAWREQNTESFKQK----YYKGLGTSLAEEMR 664

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ--ERASFID 682
           E     +K       +            + +K    KAD+R ++++  E    +D
Sbjct: 665 EYFSQLDKHMKTFHALQDV--DPGFIDLAFSK---KKADDRKEWLRGFEPGVHLD 714


>gi|330793204|ref|XP_003284675.1| hypothetical protein DICPUDRAFT_28071 [Dictyostelium purpureum]
 gi|325085373|gb|EGC38781.1| hypothetical protein DICPUDRAFT_28071 [Dictyostelium purpureum]
          Length = 1260

 Score =  349 bits (896), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 140/723 (19%), Positives = 273/723 (37%), Gaps = 93/723 (12%)

Query: 24  KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGG--------------- 68
           +       S     +   + Y   +       E V +RP  YIG                
Sbjct: 66  RSISTNNSSINSTERKIEEIYQKKTPT-----EHVLLRPDSYIGTIEKIEDDMWVLSNSM 120

Query: 69  --------------------------------------TDEKALHHLFSEVIDNAMDEVI 90
                                                 T    L  ++ E++ NA D   
Sbjct: 121 FNKKTKTVEKKNAQVSETDNQSSDKSSKNKTFIQPIKATYVPGLLKIYDEILVNAADNKK 180

Query: 91  AGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148
                + I+V ++ N G ++++++G+GIP+  H    N   +E+++  L +G  F+++  
Sbjct: 181 RDSTMSFIKVEINPNKGTISIMNDGKGIPIVMHS-TENCYVVEMVMGNLMSGSNFNDNEL 239

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQN--TIFSQKFSRGIPLSPLEKKEKVRN--KRG 204
           ++ GG +G G  + N  S E  V    ++    + QK+S  +          ++   +  
Sbjct: 240 KVVGGRNGFGAKLTNIFSKEFVVETIDKSSGKKYYQKWSNNMSNREDPIITNIKEGEQDY 299

Query: 205 TRITFRPDPKIFGDKAGFDAARL---LKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           T+ITF PD + F   + +D   L    K     A  +  V    +  +   +     +  
Sbjct: 300 TKITFTPDLEKFKTNSLWDDDILQLMEKRLYDIAGCNPEVNVYLNGVQLNYDFEKYVKLY 359

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
           E +  G  K       E+   +  E      +     +  V  +           S+ N+
Sbjct: 360 EHHLSGSAK------KEDSEELYKEESFIFGDIDERWKIGVGLSETGQ---FTQVSFVNS 410

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
           I T +GGTH + +   + R I    ++ +    + +   ++       ++  I  P F  
Sbjct: 411 INTIKGGTHVNYIAEQIVRYIAD--KMKKKHNDLEVRPINIKHHLALFVNCLIDNPSFDS 468

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           Q+K  L +          + +      V+N     ++  WV+ + +  L  +     ++ 
Sbjct: 469 QSKETLTTKSQLFGSNPEIPESILAAFVKNSKIIERVAGWVLMKQKADLVHQSSTRQSKT 528

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG---SAKQARNRSNQAVLPLRGKILN 498
             I+ ++            ++   L + EGDSA     +      R+   V PLRGK+LN
Sbjct: 529 ALIKSIQKLEDANWAGGQKSNQCTLIVTEGDSAKSLALAGLSVIGRNTYGVFPLRGKLLN 588

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREED----LRYEKVIIMTDADVDGAHIASL 554
           V     +++ NN++I +L   LG   +  Y  E+    LRY K++IM D D DG+HI  L
Sbjct: 589 VCDVKPKQLLNNEEINNLTNILGLSHKKTYETEEELKELRYGKIMIMADQDHDGSHIKGL 648

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQ-GTKSVYAHDEEHKQKILEEFKKHGKGKIE 613
           ++ F +    +L++   +     P+ ++++  T+    +  +  QK  E   K    +  
Sbjct: 649 VINFIHHFWPNLLKIGFIEEFITPIIKVSKSSTQKRSFYTIKDYQKWREGLSKDQIKQYT 708

Query: 614 ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKF 673
           I  +KGLG   +++ KE   D  K     ++   D ++ K    + +K     +  R  +
Sbjct: 709 IKYYKGLGTSTSAEAKEYFSDLGKHV---IKFKWDKDTDKYISLAFSK---DSSSLRQTW 762

Query: 674 IQE 676
           I+E
Sbjct: 763 IKE 765


>gi|145491451|ref|XP_001431725.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398830|emb|CAK64327.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1274

 Score =  349 bits (896), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 133/681 (19%), Positives = 265/681 (38%), Gaps = 71/681 (10%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD---------------------EKA 73
              ++  + Y     + +  +E +  RP  YIG                           
Sbjct: 1   MRQKTIEEQY-----KKMTHIEHILQRPDTYIGSIQRTSEQMWIIQNGKMIQKEIEYVPG 55

Query: 74  LHHLFSEVIDNAMDEVIAG----YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
              +F E++ NA D +         + I+V +     +T+ ++G  IPVE H ++     
Sbjct: 56  FFKIFDEILVNAADNLQRDTRQHKQSYIKVDI--GNEITIKNDGLPIPVEIHKEY-QIYV 112

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            E+I      G  FD+S   + GG +G G  + N  S E  + V   N  F   ++  + 
Sbjct: 113 PELIFGVFLTGSNFDDSEKRVVGGRNGYGAKLTNVYSTEFTLEVCDGNNYFKLVWNNNMS 172

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGD--KAGFDAARLLKMTQSKAYLSGRVKTCWSC 247
              +   ++++      I+++PD K FG         A L +     A + G     +  
Sbjct: 173 NKQIPTIKQLKKDPYVSISYKPDYKRFGMKEIEADTQALLTRRVYDLAGIYGSKINVYLN 232

Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307
           D++I         + +    G                      K   K       E  ++
Sbjct: 233 DEKIKINSFQKYVDLYLPTEGA--------------------IKIFDKDMTTPRWEVVVS 272

Query: 308 WCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAV 367
           +     +  S+ N I T +GGTH + +   + + I+      +  ++I +    +  S  
Sbjct: 273 YSPTQFQHVSFVNAIYTAKGGTHVNYVTDKIIQEIQNEMNNNKKYKSIEVQKYQIKQSLW 332

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
             ++  I  P F  QTK  + +  ++    +  +        +  +  T ++E + ++++
Sbjct: 333 VFINCLIDNPTFDSQTKENMTTKVSEFGGSSEEKFKVTEKFSK-ALIKTDIIETIFQQAK 391

Query: 428 ERLRRRKQREVN--RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN-- 483
            +   +  +++   +   +  +       D  +  +    L + EGDSA   A    +  
Sbjct: 392 AKADAKLNKQLKGTKTGRLHGIEKLDDANDAGKKNSELCTLILTEGDSAKALAMAGIDIV 451

Query: 484 -RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIM 541
            R    V PL+GK+LNV  A  ++I  N++I +L++ +G +   QY +   LRY  V+IM
Sbjct: 452 GRDRYGVFPLKGKLLNVREASLKQILQNEEIENLIKIIGLQKERQYTDLKSLRYGSVMIM 511

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIE-QKHLFLISPPLFRITQGTKSVYAHDEEHKQKI 600
           TD D+DG+HI  L++ F +     L++    L     PL + T+G +++     +   K 
Sbjct: 512 TDQDIDGSHIKGLIINFIHHFWPSLVKYSGFLKEFVTPLIKATKGNQTIPFFTVQDFNKF 571

Query: 601 LEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660
            +E         +I  +KGLG     + +E   +    T ++   + D +         N
Sbjct: 572 AQE---EDIKNWKIKYYKGLGTSDDQEAQEYFKNLRTHT-IQFRYDGDDDDSSI-DLCFN 626

Query: 661 KLMGTKADERFKFIQERASFI 681
           K    KA++R +++ +    +
Sbjct: 627 K---KKANDRKQWLAQYNHDL 644


>gi|148645279|gb|ABR01163.1| DNA gyrase subunit B [Gordonia lacunae]
          Length = 504

 Score =  349 bits (896), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 176/511 (34%), Positives = 270/511 (52%), Gaps = 40/511 (7%)

Query: 62  PGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENH 121
           PGMYIG T E+ LHHL  EV+DN++DE +AG+A+ ++V+L  +G + VVD+GRGIP   H
Sbjct: 1   PGMYIGSTGERGLHHLIWEVVDNSVDEAMAGFASRVDVTLLADGGVQVVDDGRGIPTGMH 60

Query: 122 PKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFS 181
                  T+E+++T LHAGGKFD+  Y +SGGLHGVGISVVNALS ++ + +      + 
Sbjct: 61  --RTGVPTVEVVMTQLHAGGKFDSDAYAVSGGLHGVGISVVNALSTKVELEIQNDGYNWE 118

Query: 182 QKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241
           Q +S   P +   ++     K GT + F PDP+IF +   F+A  + +  Q  A+L+  +
Sbjct: 119 QTYSYAKPGAL--EQGSATRKTGTTVRFWPDPEIFTETTRFNAETVARRLQEMAFLNKGL 176

Query: 242 KTCWSCDKEIAEKYGIPEKEE-----------------------------FYFPGGLKTY 272
               +  +  A +       +                             +++P GL  Y
Sbjct: 177 TITLTDQRPQAIEPPGDADGDEDGGSTEAAEVVKSEEEKAAAAAKPKTRTYHYPDGLVDY 236

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++     +  I + +     +  G     VE A+ W       + ++ NTI T EGGTHE
Sbjct: 237 IKHLNRTKQSIHNTVIGFNAKGDGH---EVEIAMQWNAGYSESVHTFANTINTHEGGTHE 293

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G R ALT  + KYA   +   ++   +  DD+      ++SV + +P+F GQTKTKL +
Sbjct: 294 EGFRAALTSTVNKYALDKKLLKEKDGKLTGDDIREGLAAVISVKVSDPQFEGQTKTKLGN 353

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE-ERLRRRKQREVNRKTAIRKLR 448
            + +  V+    +   H+   NP EA  +++  ++ S+     RR +  V RKTA     
Sbjct: 354 TEVKGFVQRTCNEHLGHWFEANPAEAKIIVKKAVDSSQARMAARRAREMVRRKTATDIGG 413

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADC  N     E++IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +++ 
Sbjct: 414 LPGKLADCRSNDPTKCEVYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVL 473

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
            N ++  ++ A G     ++    LRY K++
Sbjct: 474 KNAEVQSIITAFGTGIHDEFDISKLRYHKIV 504


>gi|10281028|dbj|BAB13755.1| type II DNA topoisomerase [Clavispora lusitaniae]
          Length = 772

 Score =  349 bits (896), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 134/621 (21%), Positives = 244/621 (39%), Gaps = 42/621 (6%)

Query: 72  KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKST 129
             L+ +F E++ NA D  I       ++V++D  +  +TV ++GRGIPVE H K      
Sbjct: 13  PGLYKIFDEILVNAADNKIRDPSMKQLKVNIDVESNTITVRNDGRGIPVEIHEK-EQMYI 71

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR--QNTIFSQKFSRG 187
            E+I   L     +D+   +++GG +G G  + N  S E  V  A      ++ Q ++  
Sbjct: 72  PEMIFGNLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFTVETADLSNGKVYQQVWTNN 131

Query: 188 IPLSPLEKKEK-VRNKRGTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244
           +      K +K    +  T+ITF+PD              + + +               
Sbjct: 132 MSKCNPPKIKKMTAKREYTQITFKPDLAKFGMERLDDDIVSVMKRRVFDLCGTVRDCSVF 191

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
            +  K   +           F   +  Y+Q   +       +      E  G      E 
Sbjct: 192 LNDTKLPIK----------SFKQYVDMYVQALRQLDDSDDPKSSVVVHENFGD---RWEV 238

Query: 305 AIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT-QNKRAISIISDDLM 363
           A A  + + +  S+ N+I T  GGTH   L  ++ + + +        K+A+ +   ++ 
Sbjct: 239 AFAVSDGSFQQVSFVNSIATTSGGTHVKMLTDSIVKQLTESISAKRGKKKALMVKPQEVK 298

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
            +    ++  +  P F  QTK ++ +  A+   +  + + F   L+       KL     
Sbjct: 299 NNMFLFVNCLVENPAFTSQTKEQMTTKPAKFGSKPVITEDFIKKLIAKTSITDKLHSL-- 356

Query: 424 ERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483
             S+    +   R+   + +  K               H   L + EGDSA   A     
Sbjct: 357 --SQANEDKALARQDGSRRSRVKSAKLHDANKAGTKDGHKCTLILTEGDSALAQAVVGLK 414

Query: 484 ---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE---DLRYEK 537
                     PLRGK+LNV  A +++I  N +I ++ + +G + +  Y  E    LRY  
Sbjct: 415 VVGNEYYGCFPLRGKMLNVRDASADQISKNAEINEIKKIIGLQHKKHYTPESLKSLRYGH 474

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIE-QKHLFLISPPLFRIT---QGTKSVYAHD 593
           ++IMTD D DG+HI  LL+ FF      L++    L     P+ ++T   +  K +  ++
Sbjct: 475 ILIMTDQDHDGSHIKGLLINFFESSFPGLLQCPGFLQGFITPIVKVTILGRHKKVIPFYN 534

Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
               ++  E  +           +KGLG  LA+++ E     ++       +  D    +
Sbjct: 535 MPDFERWRESEEAQANR-WTHKYYKGLGTSLATEITEYFQQLSRHLKRFHALQDD--DKQ 591

Query: 654 DTQDSINKLMGTKADERFKFI 674
               + NK    KAD+R  ++
Sbjct: 592 YIDLAFNK---KKADDRKDWL 609


>gi|62868798|gb|AAY17585.1| DNA gyrase B subunit [Lactobacillus crispatus]
          Length = 483

 Score =  349 bits (895), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 188/492 (38%), Positives = 277/492 (56%), Gaps = 14/492 (2%)

Query: 62  PGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENH 121
           PGMYIG T  + LHHL  E+IDN++DE +AG+A  IEV+++ +G +TV D+GRGIPV+  
Sbjct: 1   PGMYIGSTSSQGLHHLVWEIIDNSIDERLAGFATKIEVTINEDGSVTVQDDGRGIPVDIQ 60

Query: 122 PKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFS 181
            K   +  LE + T LHAGGKF    Y++SGGLHGVG SVVNALS +L VTV R    + 
Sbjct: 61  EK-TGRPALETVFTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDGKKYF 119

Query: 182 QKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
             F  G     +++   V  ++ GT + F PDP IF +   FD   L    +  A+L+  
Sbjct: 120 IDFDHGRVKDEMKQIGTVPLDEHGTIVHFYPDPDIFTETIVFDDKILKNRIRELAFLNKG 179

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
           +   ++  ++        E + + F GG+K Y+    + + ++  +    ++   G    
Sbjct: 180 LTLTFTDKRK-----DTAETDVYKFEGGIKEYVAFLNKGQEVLFDDPIYVESTYNGI--- 231

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISI 357
            VE A+ +       + ++ N I T EGG HE+G + ALTR +  YA  ++    +  ++
Sbjct: 232 DVEVALQYTNGYKTTLMTFANNIHTYEGGMHEAGFKTALTRVVNDYAHKSKILKDKDDNL 291

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             +D+      I+SV    P+F GQTKTKL + DA+  V+ A  + F  +L++NP    K
Sbjct: 292 SGEDIREGMTAIVSVKHPSPQFEGQTKTKLGNSDARTAVDKAFSETFSRFLMENPSVGRK 351

Query: 418 LLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++E   +        +R +    +K+ +    LPGKLAD + N    +ELFIVEG+SAGG
Sbjct: 352 IVEKGQLAERARTAAKRAREVTRKKSGLEVANLPGKLADNTSNDPSISELFIVEGNSAGG 411

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAKQ R+R  QA+LP+RGKILNV  A  ++I  NQ+I  L  ALG    + +     RY 
Sbjct: 412 SAKQGRSRLTQAILPIRGKILNVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYH 471

Query: 537 KVIIMTDADVDG 548
           K+IIMTDA VDG
Sbjct: 472 KLIIMTDAGVDG 483


>gi|313217160|emb|CBY38323.1| unnamed protein product [Oikopleura dioica]
          Length = 1427

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 137/686 (19%), Positives = 268/686 (39%), Gaps = 77/686 (11%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----------------------EKAL 74
           ++  + Y     + ++ LE V +RP MY+G  +                         AL
Sbjct: 3   KTIEETY-----KKVDSLEHVLLRPDMYVGSIEASKENMWVFDAESTQFVQKEIEFIPAL 57

Query: 75  HHLFSEVIDNAMDEVIAGYA-NLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
           + ++ E++ NA D  +     N+++V +D  N  ++V++NG+GIP+E H +       E+
Sbjct: 58  YKIYDEILVNAADNKVRDPNQNMVKVDIDTENNKISVLNNGKGIPIEIHKEH-GVYVPEL 116

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTV--ARQNTIFSQKFSRGIPL 190
           I   +     +D S  + +GG +G G  + N  S E  V     +     +  ++  +  
Sbjct: 117 IFGHMMTSSNYDESEKKTTGGRNGYGAKLCNIFSTEFTVETVNKKIGKRLTVTWTGNMKK 176

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKA--GFDAARLLKMTQSKAYLSGRVKTCWSCD 248
                 +       T+I+F PD K F          +   K     A  +  V      +
Sbjct: 177 KGNAVIKSYSKDDYTKISFTPDLKRFNMTHLSNDMVSLFRKRAYDIAGTTPGVSVFLDGE 236

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK--KGTHRGTVEWAI 306
           +             F      K Y     + + L + +  T   EK      +G  +   
Sbjct: 237 RIA-----------FNKKDPFKDYCNMYTKGKILDTGKEVTLIYEKPENKEAKGRWDVGF 285

Query: 307 AWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISA 366
           A  +   +  S+ N+I T +GG H + +   L + +++     +NK  + + +  +    
Sbjct: 286 AISDNGFQNISFVNSINTSKGGHHVNAISDQLVKRLEE-LVNKKNKGGLGVKAHQIKSHC 344

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
              ++  I  P F  QTK  L  + ++   +  L D F   + +     + ++E +    
Sbjct: 345 WIFVNSQIENPAFDSQTKETLTLVKSKHGSKPILSDAFIKKVEK-----SGIVETITNFM 399

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG-----GSAKQA 481
           + +  + K +   +K     +       +  +  +    L + EGDSA      G +  A
Sbjct: 400 KFKENQAKGKIGGKKQKKVVILKLDDAPEAGKTQSKDCTLILTEGDSAKTAALAGVSSMA 459

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED----LRYEK 537
             +    V PLRGK+LN   AG +++  N++I +++QA+G   + +Y   +    LRY +
Sbjct: 460 DLKRYYGVFPLRGKLLNAREAGHQQLTKNEEIKNIIQAMGFDFKRKYDNPEDLKSLRYGR 519

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-------KSVY 590
           ++IMTD DVDG+HI  L++ F +    ++I    +     P+ +I           K   
Sbjct: 520 LMIMTDQDVDGSHIKGLIINFLHHFWPNMIRGPTVQQFITPIVKIFLKKDENKQNCKKTN 579

Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
            +      K   E          +  +KGLG     + KE   D  +   +    +   N
Sbjct: 580 FYSLPEFNKWQREVPNLD--AYRVEYYKGLGTSGPEEFKEYFQDIQRHR-IPFRYS-GPN 635

Query: 651 SLKDTQDSINKLMGTKADERFKFIQE 676
             +  + +  +      D+R +++ E
Sbjct: 636 CDERIKMAFAR---DLVDDRKEWLTE 658


>gi|291000712|ref|XP_002682923.1| DNA topoisomerase II [Naegleria gruberi]
 gi|284096551|gb|EFC50179.1| DNA topoisomerase II [Naegleria gruberi]
          Length = 1457

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 150/716 (20%), Positives = 262/716 (36%), Gaps = 90/716 (12%)

Query: 10  STLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT 69
           S     +   S+   +  +  +S    N++  + Y   S+R     E + +RP  Y+G  
Sbjct: 20  SDDEASAAEESDDEVEFIDHDESNNNKNKTVEEIYQKKSLR-----EQILLRPDTYVGSV 74

Query: 70  D------------------------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGN 104
           +                          AL+ +F E++ NA D  +     N I+V+++  
Sbjct: 75  NMQEGEDMWIWDDEDKRMKMKTIKFVPALYKIFDEILVNAADHSVRDETCNKIKVTINPE 134

Query: 105 -GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
              ++V +NG GIPV+ H +        +I   L     FD++   ++GG +G G  + N
Sbjct: 135 QNEISVYNNGAGIPVKIHAEH-KIYVPTMIFGHLLTSSNFDDTQKRVTGGRNGYGAKLTN 193

Query: 164 ALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDK- 219
             S++  V      +   F Q +++ +      K       +  T ITF PD   FG   
Sbjct: 194 IFSEKFIVETVDSEEKKKFRQTWTQNMEKEEEPKITTCSKAESYTEITFYPDLSKFGMDK 253

Query: 220 -AGFDAARLLKMTQSKAYLSGRVK-TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
                 + L K     A           +  K    K               K Y++   
Sbjct: 254 LDDDIVSLLKKRVYDLAGTLKTGIGIYLNGKKITGMKTF-------------KDYVKLYT 300

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337
            ++ +   E                +  I   E + +  S+ N+I T +GG H   +   
Sbjct: 301 IDKEIHYFE-----------DGKRWKVGITLSEGSMQQVSFVNSICTTKGGKHVDHIVNQ 349

Query: 338 LTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           ++  IKK       K+  +I    +       +S  I  P F  Q+K  L +       +
Sbjct: 350 VSDNIKKALV----KKNNTIKPAYIKNQLWVFVSSLIINPSFDSQSKETLTTSMKDFGSK 405

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
             L + F   + +   EA      +     +  +   ++   +K+ +  +       D  
Sbjct: 406 CKLDEAFLKKVTKMASEA-----VLKYADFKSEKALNKKSGTKKSRLTGISKLDDANDAG 460

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
              +    L + EGDSA   A    +   R    V PL+GK LNV     +K+  N++I 
Sbjct: 461 SKNSEKCTLILTEGDSAKALAVGGLSVVGRDYYGVFPLKGKPLNVRDCKLDKVVKNEEIS 520

Query: 515 DLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ-K 570
            L + LG +    Y +ED   LRY  ++IM D D DG+HI  LL+ F ++    L++   
Sbjct: 521 TLAKILGLKFDKTYTKEDIKSLRYGSIMIMADQDHDGSHIKGLLINFIHKFWPSLLKIPG 580

Query: 571 HLFLISPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
            L     P+ + T     K+V        +   E           I  +KGLG   A + 
Sbjct: 581 FLKEFITPIVKATNNRTKKAVTFFSIPEYETWKEGL--SDTKGWTIKYYKGLGTSTAPEA 638

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER--ASFID 682
           KE   + +   L +     D +  K      +K      DER +++      ++ID
Sbjct: 639 KEYFSNMS---LHQKRFKYDTDCDKKITSVFSKAA---TDERKEWLNNHQEGTYID 688


>gi|164425154|ref|XP_962372.2| DNA topoisomerase 2 [Neurospora crassa OR74A]
 gi|157070812|gb|EAA33136.2| DNA topoisomerase 2 [Neurospora crassa OR74A]
          Length = 1909

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 150/741 (20%), Positives = 276/741 (37%), Gaps = 99/741 (13%)

Query: 2   TDDSIDLFSTLPPQSQGSSEKLKKSGE-----------------IPDSPAFANQSASDNY 44
           +D    +    PP ++   +   K                     P     A ++A++ Y
Sbjct: 72  SDKDDGMLDNTPPNAKKQKKAPVKKAAGKPLAEIENDSMQIDSVAPAKKTGAAKTATEMY 131

Query: 45  DASSIRILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEV 81
                + L  LE +  RP  YIG  +                          L+ +F E+
Sbjct: 132 -----QKLTQLEHILKRPDTYIGSVERSEQKMWVFNKATGLMENRQISFVPGLYKIFDEI 186

Query: 82  IDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139
           + NA D          ++V+++   G ++V +NG+GIPVE H         E+I   L A
Sbjct: 187 LVNAADNSQRDSSMTFLKVTINRESGEISVENNGKGIPVEIHG-TEKCYVPELIFGHLLA 245

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKE 197
           G  FD++  +  GG +G G  + N  S E  +          + Q ++  +      K  
Sbjct: 246 GSNFDDNEKKTVGGRNGYGAKLTNIFSREFTLECQDSVNGKRYKQTWTDNMSKMSPPKIT 305

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAA---RLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
             +     RITFRPD   FG   G D      L +     A                   
Sbjct: 306 SNKAADFVRITFRPDFSKFGMADGIDDDLEALLYRRVYDMAGTLNFKT------------ 353

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE 314
                    Y     K   + + E          T   E++ +     E      + + +
Sbjct: 354 ---------YCGLYAKAIAKERDEVADGEDVTPATVIFEQQRSEGKLWEVGFTVSDGSFQ 404

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFI 374
             S+ N I T  GG+H + +   +   + K  +  + K      ++ +       ++  I
Sbjct: 405 QVSFVNNIATTSGGSHVNYIADQIIEVLMKELQKKKGKGHGLKTAN-VKNQFFIFINCLI 463

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
             P F+ QTK +L +  A+   +  L D F   +       ++ ++ ++  ++++  +  
Sbjct: 464 DNPAFSSQTKEQLTTKPAKFGSKCQLGDLFLKKVR-----QSEAIDNLLSFADKKRDKDL 518

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR---NRSNQAVLP 491
            +    K          +        +    L + EGDSA G A   R   + +   V P
Sbjct: 519 AKNDGSKRKRISNDKLIEANYAGGRYSQECTLILTEGDSARGLAVAGRAILDPNRIGVFP 578

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAH 550
           LRGK+LNV  A +++I  N+++ ++ + LG +    Y +   LRY  ++IM D D+DG+H
Sbjct: 579 LRGKMLNVRDASADQILKNKEVENIKKFLGLKHGKVYTDTKDLRYGHLMIMADQDLDGSH 638

Query: 551 IASLLLTFFYQEMYDLIEQKHLF-LISPPLFRITQG---TKSVY---AHDEEHKQKILEE 603
           I  LL+ FF  +   L+   + F     P+ ++ QG    K             ++  +E
Sbjct: 639 IKGLLINFFECQFPSLLRIPNFFQEFITPVVKVWQGPNPKKPQRLQGFFTLPQYEEW-KE 697

Query: 604 FKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLM 663
             ++   + +    KGLG       +    + NK  L   ++     S +  + + +K  
Sbjct: 698 AHRNELRRWKYKYLKGLGSSTTDDAQLYFTNLNKH-LKEFDVMTREES-EMFELAFSK-- 753

Query: 664 GTKADERFKFIQ--ERASFID 682
             KAD R +++   E  +++D
Sbjct: 754 -KKADARKEWLAKCEPGTYLD 773


>gi|331251443|ref|XP_003338318.1| DNA topoisomerase 2 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309317308|gb|EFP93899.1| DNA topoisomerase 2 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 1164

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 146/725 (20%), Positives = 273/725 (37%), Gaps = 94/725 (12%)

Query: 3   DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQ-SASDNYDASSIRILEGLEPVRMR 61
           ++  D  +        +     K     + PA + + +AS+ Y     + L  LE V  R
Sbjct: 69  ENQADSDNNSEAGDVLTELPASKPPTTTNGPAGSKKKTASETY-----QKLSQLEHVLKR 123

Query: 62  PGMYIGGTD-----------------------EKALHHLFSEVIDNAMDEVIAG-YANLI 97
           P  YIG  +                          L+ +  E++ NA D        + +
Sbjct: 124 PDTYIGSVEAIRQFMWIFDKEKKTMVNKEISFVPGLYKIVDEILVNAADNKQRDDSMDTL 183

Query: 98  EVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           +V++D     ++V++NG+GIP+E H +       E+I   L AG  FD+   + +GG +G
Sbjct: 184 KVTIDSEKNIISVMNNGKGIPIEIH-ETEQIYIPELIFGHLLAGSNFDDEEKKTTGGRNG 242

Query: 157 VGISVVNALSDELHVTVARQN--TIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDP 213
            G  + N  S E  V  A +     + Q F   + +    K  + +  +  T+I+F+PD 
Sbjct: 243 YGAKLANIYSTEFIVEAADKQTAKKYKQIFKNNMSVKEKPKITENKKGEEYTKISFKPDL 302

Query: 214 KIFGDKAG-----FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
             F   A         A + K     A     VK   + ++    K    +K    +  G
Sbjct: 303 VKFNLPAENGLAGDMEALISKRVYDMAGTLRNVKVWLNDERI---KLTGFKKYVEMYTSG 359

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRG---TVEWAIAWCEENPEITSYCNTILTD 325
           +   ++               G T+    +       E A A  +   +  S+CN+I T 
Sbjct: 360 VNEAIKGSAAKALEAPGSPGNGATKTPIIYEECGKRWEIAFAPSDGQFQQVSFCNSIATT 419

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           +GGTH   +   L   I +   + + K  +++    +       ++  I  P F  QTK 
Sbjct: 420 KGGTHVEHIVKQLVEKIIE--SVNKKKAKLTLKPYQVRNHLWVFVNCLIENPTFDSQTKE 477

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIR 445
            +    ++   +  + + F   +++     + +++ V++ ++ +     ++    K +  
Sbjct: 478 NMTLGMSKFGSKCVMTEEFMKKVMK-----SGVIDSVMDFAKFKEEAALKKTDGSKRSRI 532

Query: 446 KLRLPGKLADCS-QNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVAS 501
              +  + A+ +    A    L + EGDSA   A    +   R N  V PLRGK+LNV  
Sbjct: 533 TGIVKLEDANNAGTRKAADCTLILTEGDSAKSLAVAGLSVIGRDNYGVFPLRGKLLNVRE 592

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A   ++ NN +I  + Q +G +   +Y   D LRY  ++IMTD  ++             
Sbjct: 593 ASGAQLLNNAEIQHIKQIMGLQQGKKYASRDSLRYGSLMIMTDQAIE------------- 639

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
                            P+ ++T+  + +        +K  EE             +KGL
Sbjct: 640 --------------FITPIVKVTRKKEELSFFTMPEFEKWKEE--NDDGRGWTSKYYKGL 683

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ--ERA 678
           G   A   K+     +   +         N       + NK    KAD+R ++++  E  
Sbjct: 684 GTSDAKDAKKYFSRMSSHRIKFA--PTQENDRHLIDMAFNK---KKADDRKEWLRGFEPG 738

Query: 679 SFIDD 683
           + +D 
Sbjct: 739 THLDQ 743


>gi|171683279|ref|XP_001906582.1| hypothetical protein [Podospora anserina S mat+]
 gi|170941599|emb|CAP67253.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1767

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 141/679 (20%), Positives = 259/679 (38%), Gaps = 62/679 (9%)

Query: 47  SSIRILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVID 83
            + + L  LE +  RP  YIG  +                          L+ +F E++ 
Sbjct: 123 ETYQKLTQLEHIIKRPDTYIGSVERTDQKMWVFNKTEKLMENRVVSFVPGLYKIFDEILV 182

Query: 84  NAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141
           NA D          ++V++D   G ++V +NG+GIPVE H K       E+I   L  G 
Sbjct: 183 NAADNSQRDASMTFLKVTIDSETGEISVENNGKGIPVEMHQK-EGCYIPELIFGHLLTGS 241

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEKV 199
            +D+   +  GG +G G  + N  S +  +          + Q ++  +      K    
Sbjct: 242 NYDDDEKKTVGGRNGYGAKLTNIFSLKFTLECQDSVNGKRYKQTWTDNMSKMEKPKITAN 301

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAA---RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
           +     R+TF PD K FG + G D      + +     A     VK   + ++    K  
Sbjct: 302 KTNDFVRVTFLPDYKRFGMENGIDDDLEALMYRRVYDMAGTMASVKVWLNGEQL---KIA 358

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT 316
             +     +   +       +      ++     +  +       V + ++  + + +  
Sbjct: 359 KFKGYCQLYAKSIAAERGDVVPEGEKPTAANVEYEEVRDKGRTWQVGFTVS--DGSFQQV 416

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIRE 376
           S+ N I T  GGTH + +   +T       EL + K+   +   +        ++  +  
Sbjct: 417 SFVNNIATTSGGTHVNYIADQITEA--LLKELNKKKKGHGLKPANFRNYIFIFINCLVDN 474

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P F  QTK +L +  +    +  L D F   + +     ++++  ++E +E +  +   +
Sbjct: 475 PAFTSQTKEQLTTKVSAFGSKCILSDAFLKKVQK-----SEVIANIMEFAERKADKMLAK 529

Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR---NRSNQAVLPLR 493
               K A                  H   L + EGDSA   A   R   +     V PLR
Sbjct: 530 SDGNKRARVSNEKLVDANLAGTKRGHECTLILTEGDSARALAVAGRAVLDPDRIGVFPLR 589

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIA 552
           GK+LNV  A +E+I  N++I ++ + LG + +  Y +   LRY  ++IM D D+DG+HI 
Sbjct: 590 GKMLNVRDASTEQIMKNKEIENIKKFLGLKHKQVYTDTRGLRYGHLMIMADQDLDGSHIK 649

Query: 553 SLLLTFFYQEMYDLIEQKHLF-LISPPLFRITQGT------KSVYAHDEEHKQKILEEFK 605
            LL+ F   +   L+   + F     P+ ++ QGT      +     +    +   +E  
Sbjct: 650 GLLINFLEVQFPSLLRIPNFFQQFITPVVKVWQGTNPKKPLRPKSFFNLVEYETW-KENN 708

Query: 606 KHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT 665
           K+   K +    KGLG       +    D ++       +       +      +K    
Sbjct: 709 KNELRKWKYKYLKGLGSSSNEDAQVYFTDLDRHLKEFETLK--PEESQMLDMIFSK---K 763

Query: 666 KADERFKFIQE--RASFID 682
           KAD R +++      +F+D
Sbjct: 764 KADARKEWLGNFVPGTFLD 782


>gi|153823959|ref|ZP_01976626.1| topoisomerase IV, subunit B [Vibrio cholerae B33]
 gi|126518518|gb|EAZ75741.1| topoisomerase IV, subunit B [Vibrio cholerae B33]
          Length = 486

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 172/501 (34%), Positives = 262/501 (52%), Gaps = 20/501 (3%)

Query: 185 SRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
             G  ++ L       R   GT + F PD K F     F  +RL+   ++KA L   ++ 
Sbjct: 2   EHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSPN-FSVSRLINNLRAKAVLCPGLEI 60

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
            ++      E         + +  GLK YL   ++  +L+  E FTG+   +     T  
Sbjct: 61  IFTDKVNNNE-------HRWLYEDGLKDYLAEGVKGYTLLPEEPFTGEFTAQTEA-ATWA 112

Query: 304 WAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDL 362
                        SY N I T +GGTH +GLR  L   ++++ E      R + +  +D+
Sbjct: 113 VIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNLLPRGVKLTGEDV 172

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
                 +LS+ +++P+FAGQTK +L S  +   V   ++D F  +L + P  A +L E  
Sbjct: 173 FDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAFSLWLNEKPQLAEQLAEVC 232

Query: 423 IERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           I  +  R+R    ++V RK       LPGKL DC+    + TELF+VEGDSAGGSAKQAR
Sbjct: 233 IANAHSRMR--ASKKVVRKKIASGPALPGKLTDCTVQDLNRTELFLVEGDSAGGSAKQAR 290

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           +R  QAV+PLRGKILN     ++++  +Q++ D+  ALG    S   E  LRY KV I+ 
Sbjct: 291 DREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVALGIDPDSDNLEA-LRYGKVCILA 349

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILE 602
           DAD DG HIA+LL   F +    L++  H+++  PPL+RI  G +  YA D++ K+ +LE
Sbjct: 350 DADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRIDCGKEVFYALDDQEKEGVLE 409

Query: 603 EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKL 662
              +  K K+ + RFKGLGEM   QL+ET MD N R L+++ I+      + T + ++ L
Sbjct: 410 RLSQK-KAKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDD----AEATDEMMDML 464

Query: 663 MGTK-ADERFKFIQERASFID 682
           +G K AD+R  ++Q      +
Sbjct: 465 LGKKRADDRRAWLQRNGDMAE 485


>gi|115392233|gb|ABI96917.1| topoisomerase [Trypanosoma congolense]
          Length = 1439

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 140/683 (20%), Positives = 245/683 (35%), Gaps = 79/683 (11%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGG-----------------------TDE 71
            A ++  + Y           E +  RP MYIG                        T  
Sbjct: 1   MAQRTVEEIYQKK-----TQHEHILARPDMYIGTIEPVTEDMWVYDEADCVMKLQRCTWT 55

Query: 72  KALHHLFSEVIDNAMDEVIAG-YA-NLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKS 128
             L+ +F E++ NA D  +   +    I+V +D   G + V +NG GIPV+ H +  +  
Sbjct: 56  PGLYKIFDEILVNAADNKVRDPHGQTAIKVWIDTERGVIRVYNNGEGIPVQRHREH-DLW 114

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSD--ELHVTVARQNTIFSQKFSR 186
             E+I   L     +D++  +++GG +G G  + N  S   EL    +R    F  ++  
Sbjct: 115 VPEMIFGHLLTSSNYDDTEAKVTGGRNGFGAKLTNVFSTCFELETVHSRSRKKFFMRWRN 174

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLLKMTQSKAYLSGRVKTC 244
            +  S             T +TF PD   F  +  +   A  + +     A         
Sbjct: 175 NMLESEEPVITSCDGPDYTMVTFYPDFAKFKLQGLSEDMALIMKRRVYDIAGC------- 227

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
              +K ++      +     F   +  Y     E R    S                 E 
Sbjct: 228 --TEKSLSCYLNGEKIPCRSFAEYVDLYPTMGEERRPGSYSR-----------VNDRWEV 274

Query: 305 AIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMI 364
            +       +  S+ N+I T  GGTH   ++  + + I K  E    K    +    +  
Sbjct: 275 CVRVSNIGFQQVSFVNSIATTRGGTH---VKYVVEQIIAKVTEQAMRKSKTEVKPHMIRP 331

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
                ++  I  P F  QTK  L +   +      L       ++++ I    +     +
Sbjct: 332 HMFVFVNCLIENPSFDSQTKETLNTPKTRFGSVCDLPASLIDCVLKSSIVERAVEMANSK 391

Query: 425 RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA--- 481
            S E   + +     +   I KL    +        ++   L + EGDSA          
Sbjct: 392 LSREMAMKLRNSNRKQVLGIPKLDDANE---AGGKNSYRCTLILTEGDSAKALCTAGLAV 448

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVII 540
            NR    V PLRGK LNV  A  +K+ +  +   + + +G     +Y   E LRY  ++I
Sbjct: 449 ENRDYFGVFPLRGKPLNVRDASIKKVMSCAEFQAVSKIMGLDVTQKYTSVEGLRYGHLMI 508

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQGTK------SVYAHD 593
           M+D D DG+HI  L++   +    DL++    L     P+ +  + ++      ++    
Sbjct: 509 MSDQDHDGSHIKGLIINMIHNYWPDLLKVPGFLQQFITPIVKARKKSRGNGDEGAISFFS 568

Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
                +       + K   E+  +KGLG   A + +E   + ++  L  V   +D     
Sbjct: 569 MPDYFEWKNAVGDNIK-NYELRYYKGLGTSGAKEGREYFENIDRHRLNFV--YEDKKDDD 625

Query: 654 DTQDSINKLMGTKADERFKFIQE 676
           D   +  K    K DER ++I +
Sbjct: 626 DIIMAFAK---DKVDERKRWITD 645


>gi|313235194|emb|CBY25067.1| unnamed protein product [Oikopleura dioica]
          Length = 1427

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 137/686 (19%), Positives = 268/686 (39%), Gaps = 77/686 (11%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----------------------EKAL 74
           ++  + Y     + ++ LE V +RP MY+G  +                         AL
Sbjct: 3   KTIEETY-----KKVDSLEHVLLRPDMYVGSIEASKENMWVFDAESTQFVQKEIEFIPAL 57

Query: 75  HHLFSEVIDNAMDEVIAGYA-NLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
           + ++ E++ NA D  +     N+++V +D  N  ++V++NG+GIP+E H +       E+
Sbjct: 58  YKIYDEILVNAADNKVRDPNQNMVKVDIDTENNKISVLNNGKGIPIEIHKEH-GVYVPEL 116

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTV--ARQNTIFSQKFSRGIPL 190
           I   +     +D S  + +GG +G G  + N  S E  V     +     +  ++  +  
Sbjct: 117 IFGHMMTSSNYDESEKKTTGGRNGYGAKLCNIFSTEFTVETVNKKIGKRLTVTWTGNMKK 176

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKA--GFDAARLLKMTQSKAYLSGRVKTCWSCD 248
                 +       T+I+F PD K F          +   K     A  +  V       
Sbjct: 177 KGNAVIKSYSKDDYTKISFTPDLKRFNMTHLSNDMVSLFRKRAYDIAGTTPGVSVFLDGQ 236

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK--KGTHRGTVEWAI 306
           +             F      K Y     + + L + +  T   EK      +G  +   
Sbjct: 237 RIA-----------FNKKDPFKDYCNMYTKGKILDTGKEVTLIYEKPENKEAKGRWDVGF 285

Query: 307 AWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISA 366
           A  +   +  S+ N+I T +GG H + +   L + +++     +NK  +++ +  +    
Sbjct: 286 AISDNGFQNISFVNSINTSKGGHHVNAISDQLVKRLEE-LVNKKNKGGLAVKAHQIKSHC 344

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
              ++  I  P F  QTK  L  + ++   +  L D F   + +     + ++E +    
Sbjct: 345 WIFVNSQIENPAFDSQTKETLTLVKSKHGSKPILSDAFIKKVEK-----SGIVETITNFM 399

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG-----GSAKQA 481
           + +  + K +   +K     +       +  +  +    L + EGDSA      G +  A
Sbjct: 400 KFKENQAKGKIGGKKQKKVVILKLDDAPEAGKTRSKDCTLILTEGDSAKTAALAGVSSMA 459

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED----LRYEK 537
             +    V PLRGK+LN   AG +++  N++I +++QA+G   + +Y   +    LRY +
Sbjct: 460 DLKRYYGVFPLRGKLLNAREAGHQQLTKNEEIKNIIQAMGFDFKRKYDNPEDLKSLRYGR 519

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-------KSVY 590
           ++IMTD DVDG+HI  L++ F +    ++I    +     P+ +I           K   
Sbjct: 520 LMIMTDQDVDGSHIKGLIINFLHHFWPNMIRGPTVQQFITPIVKIFLKKDENKQNCKKTN 579

Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
            +      K   E          +  +KGLG     + KE   D  +   +    +   N
Sbjct: 580 FYSLPEFNKWQREVPNLD--AYRVEYYKGLGTSGPEEFKEYFQDIQRHR-IPFRYS-GPN 635

Query: 651 SLKDTQDSINKLMGTKADERFKFIQE 676
             +  + +  +      D+R +++ E
Sbjct: 636 CDERIKMAFAR---DLVDDRKEWLTE 658


>gi|300176630|emb|CBK24295.2| unnamed protein product [Blastocystis hominis]
          Length = 1173

 Score =  347 bits (889), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 135/664 (20%), Positives = 250/664 (37%), Gaps = 54/664 (8%)

Query: 50  RILEGLEPVRMRPGMYIGGTDE-----------------------KALHHLFSEVIDNAM 86
           + L   + +  RP  YIG                             L  +F E++ NA+
Sbjct: 22  QKLSQRDHILKRPDTYIGSVQNITQKMWLFDETSKSMQYRSVNYNPGLIKIFDEILVNAV 81

Query: 87  DEVIAGY-ANLIEVSLDG-NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144
           D          I+VS+D     +++ ++G GIPV  HP++ N     +I   L +G  FD
Sbjct: 82  DNKQRCPEMTTIKVSVDKKTNTISIYNDGDGIPVAIHPEY-NVYIPSMIFGQLLSGTNFD 140

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK-VRNKR 203
           +++ +++GG +G G  + N  S E  V        F Q F   +      K  K  R+K+
Sbjct: 141 DNSKKVTGGRNGFGAKLTNIYSTEFRVETVSNEKRFIQVFRNNMTEEEKPKVTKATRSKQ 200

Query: 204 GTRITFRPDPKIFGDK--AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
            T I F+PD   FG K       A + +     A ++      +   +++  +      +
Sbjct: 201 YTEIVFKPDLARFGMKELDDDTIAIMKRRVYDVAGVTDDSVKVYWNGEKLNVRSFNDYVK 260

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK-------KGTHRGTVEWAIAWCEENPE 314
            F        +++   +    I  ++  G + +             T     ++      
Sbjct: 261 LFERTLQNTDFVEQNNDALQHIDIQMAYGASPRWQFAVIPTPITGITPFSVGSYFFSLNG 320

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFI 374
             S+ N + T+ GG H + L   +   ++   E    +   S+    +        +  I
Sbjct: 321 KMSFVNGVFTNRGGKHLTYLTDHIVAQLQPAIERRLKR---SVKPSLIRQHLCVFCNCLI 377

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
             P F  QTK  L +          L   F   + ++ I         ++  +   +   
Sbjct: 378 ENPTFDSQTKECLTTNSKDFGSLPELSPSFLSKIERSGIVDLVSTSMHLKDIQTLKKSSG 437

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLP 491
            +        +         +     +    L I EGDSA   A        R N  V P
Sbjct: 438 TKVNRLLNIPKL----DDANNAGTKKSGQATLIITEGDSAKALAVGGLGVVGRDNYGVFP 493

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAH 550
           L+GK++NV  A  ++   N++I +LV+ LG +   +Y++   LRY  ++IMTD D DG+H
Sbjct: 494 LKGKVMNVRDATEKQCSENEEIQNLVRILGLKYGKEYKDTSSLRYGHLLIMTDQDYDGSH 553

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           I  L+L  F      L++   +     P+ ++T+  +       +  Q      K+    
Sbjct: 554 IKGLVLNLFETFWPSLLKLDFVSQFITPIVKVTRKKEEHTFFTVKEFQDWSN--KEKDLK 611

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADER 670
             +I  +KGLG   A + KE   + ++  L    +    ++L        +   ++ +ER
Sbjct: 612 SWKIKYYKGLGTSTAKEGKEYFSNLDRHVLPFAPLTSSESNL--IDMCFKR---SRCEER 666

Query: 671 FKFI 674
            ++I
Sbjct: 667 KEWI 670


>gi|84997852|ref|XP_953647.1| DNA topoisomerase II [Theileria annulata]
 gi|65304644|emb|CAI72969.1| DNA topoisomerase II, putative [Theileria annulata]
          Length = 922

 Score =  347 bits (889), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 202/734 (27%), Positives = 313/734 (42%), Gaps = 123/734 (16%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASD--------NYDASSIRIL 52
           ++    +  +     ++ + +       +P      ++   +         Y +  I +L
Sbjct: 55  LSTSGDNFKTNNSKINKFNLKDQNIEDAVPSPVTDGDEKGENVNQLQDTGEYSSDDIIVL 114

Query: 53  EGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDN 112
           EGL  VR RPGMYIG T E+ +H L  EV+DN++DE +AG+ N I VSL  +G + V DN
Sbjct: 115 EGLNAVRKRPGMYIGNTGERGVHQLLYEVLDNSVDEYLAGFCNRITVSLMKDGSVEVSDN 174

Query: 113 GRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN--------------------------- 145
           GRGIP +  PK   KS LE +LT LH+GGKF +                           
Sbjct: 175 GRGIPCDISPK-TGKSGLETVLTVLHSGGKFQDIFPPNSTSMSSEDQNDLKSRKKGEKEH 233

Query: 146 ---STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG---IPLSPLEKKEKV 199
                YE S GLHGVG+SVVNALS+ L V V +    +  + S+G    PL+   + E  
Sbjct: 234 EEKKVYEYSSGLHGVGLSVVNALSELLIVDVYKGPKSYHIELSKGNIVKPLAEFSEPETT 293

Query: 200 RNKR------GTRITFRPDPKIFGDKAG------------------------------FD 223
                     GT I F PD K                                     F 
Sbjct: 294 EKSNNNLKRYGTTIRFLPDYKNIFKTHHQHTETEKEEDYDTTTNKSGLDTKCSGCKNGFI 353

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              +    +  +YL+  +       +   E    P +E +   GG +++L+  +++++ +
Sbjct: 354 LELIKTRAKELSYLNPGLSIKLVDYRITDENN-EPWEETYRNTGGTRSFLEELIKDKTPL 412

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTRGI 342
              I      K       VE + +W  E    +       ++   GTH  G ++++TR +
Sbjct: 413 YKPISYITI-KGVISNINVEVSFSWSLESYTALIKGYANNVSTIAGTHIDGFKISITRCV 471

Query: 343 K----KYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
                KY     N + ++   + +      ++SV +   EF GQTKTKL +   +   E 
Sbjct: 472 NGLLKKYGYFKGNVKPLN--GEFIREGMTAVISVKLTGAEFDGQTKTKLGNALVKTVTEK 529

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK-LRLPGKLADCS 457
            + + F + L  N      +        +     R  +++ R+ +      + GKL +CS
Sbjct: 530 IVNEQFTNILENNKELLLAIHNKSQAAKKAFDAARTAKDLIRQKSSSIVSNISGKLTECS 589

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE-KIRNNQQIMDL 516
            +     ELFIVEG+SA G+AKQARNR  QAVLPL+GKILN+       K+  NQQI  L
Sbjct: 590 SSKVENNELFIVEGESAAGNAKQARNRQFQAVLPLKGKILNIEKITDNSKVLENQQIQLL 649

Query: 517 VQALGCRTRSQYREE--------------------------------DLRYEKVIIMTDA 544
           + ++G         +                                 LRY K+I++TDA
Sbjct: 650 MNSIGISINPVTWRQNDLTEGTHMAMDRFIEMNSSKLTRKQIWLDLSKLRYGKIILLTDA 709

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT--QGTKSVYAHDEEHKQKILE 602
           DVDG+H+ SLLL   Y+    L     +++ SPPL+RIT  +  K +Y+  +EH  K ++
Sbjct: 710 DVDGSHLKSLLLCLLYRLCPSLYLHGRVYVASPPLYRITNLRNKKYIYSWSQEHLLKTIK 769

Query: 603 EFKKHGKGKIEISR 616
           E       K    R
Sbjct: 770 ELNSKYSPKETTER 783



 Score =  107 bits (266), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 39/106 (36%), Positives = 57/106 (53%), Gaps = 11/106 (10%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           IT+  KS    DE     I + F K+ K  I I RFKGLGEM+A+QL ET MD  KR L 
Sbjct: 825 ITKDEKS----DELDLYNINKSFSKNNKHLI-IQRFKGLGEMMANQLWETTMDPKKRILK 879

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER--ASFIDDVG 685
           R+ ++++     +  + I  LMG+    R ++I     A  ++D+ 
Sbjct: 880 RIVVSQEP----EISEIIRLLMGSDVQSRKQYIFNNSGAFNLEDLD 921


>gi|254444126|ref|ZP_05057602.1| DNA topoisomerase II N-terminal domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198258434|gb|EDY82742.1| DNA topoisomerase II N-terminal domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 591

 Score =  346 bits (888), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 171/633 (27%), Positives = 275/633 (43%), Gaps = 60/633 (9%)

Query: 64  MYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPV 118
           MYIG      + +  ++ L  E+IDN++DE  +G+   I++++  +  +TV D GRGIP+
Sbjct: 1   MYIGKLGDGSSPDDGIYVLIKEIIDNSIDEHTSGHGKRIDITI-QDETVTVRDFGRGIPL 59

Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178
                      +   ++ ++ G K+D+ T++ S GL+GVG   VN LS+    +  R+  
Sbjct: 60  GK---------VVDCVSVINTGAKYDSETFQKSVGLNGVGTKAVNFLSESFVASAYREGK 110

Query: 179 IFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLS 238
                F  G  L+   ++ K   K GT + F PD  IF +   +    +  M  + AYL+
Sbjct: 111 TKKATFEHGE-LAKESRQVKTDEKNGTYVEFVPDHSIFKNF-KYRLEFVEAMLWNYAYLN 168

Query: 239 GRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH 298
             +    + +              F    GLK  LQ  L    L       G+       
Sbjct: 169 TGLTLSLNGE-------------TFKSENGLKDLLQDNLSGDILYPIIHLKGE------- 208

Query: 299 RGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI 357
              +E AI        +  S+ N   T  GGTH++  R A+ + I+++     +   +  
Sbjct: 209 --DIEVAITHGTHYGEDYFSFVNGQHTTMGGTHQAAFREAIVKTIREFFNKNYDPADVRT 266

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
                +   V       +     G           +  V + ++   D +L + P  A  
Sbjct: 267 SIVSAISVRVQEPVFESQTKTKLGSQNIAPKGPSIRNFVNSFIKKELDDHLHRYPETAKA 326

Query: 418 LLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS------QNIAHGTELFIVEG 471
           + + ++   +ER      R++ R+ A +      KL DC          A    LFIVEG
Sbjct: 327 IQQKIVSSEKERKELSGIRKLAREKAKKVNLHNKKLRDCRAHFNSRHKQADDATLFIVEG 386

Query: 472 DSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE 531
           DSAGGS  + R+ + QAV  L+GK LN      + +  N +   L  AL           
Sbjct: 387 DSAGGSITKTRDVNTQAVFSLKGKPLNAFGLSKKIVYQNDEFNCLQSALDIEDGLDT--- 443

Query: 532 DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYA 591
            LRY KV+I TDADVDG HI  LLLTFF Q   DL+ Q HL+++  PLFR+    K++Y 
Sbjct: 444 -LRYNKVVIATDADVDGMHIRMLLLTFFLQFFPDLVRQGHLYILQTPLFRVRNKKKTIYC 502

Query: 592 HDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651
           ++++ K + L+   K      EI+RFKGLGE    +   T +  +   L  V +      
Sbjct: 503 YNQKEKDRALKNLGKAA----EITRFKGLGEASPDEFA-TFIGPD-MKLEHVTMAH---- 552

Query: 652 LKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           L +  + ++  MG    +R +FI        D+
Sbjct: 553 LHNIDELLSFYMGKNTPKRQEFIIGNLQVEKDL 585


>gi|255065020|ref|ZP_05316875.1| DNA topoisomerase IV, B subunit [Neisseria sicca ATCC 29256]
 gi|255050441|gb|EET45905.1| DNA topoisomerase IV, B subunit [Neisseria sicca ATCC 29256]
          Length = 542

 Score =  346 bits (887), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 184/550 (33%), Positives = 275/550 (50%), Gaps = 30/550 (5%)

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKI 215
           +G+SV NALS  L VTV R+  I    F+ G  + PL +  K      GT +   PD K 
Sbjct: 1   MGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAEVGKCAVKDSGTEVRVWPDGKY 60

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     +    L ++ ++KA L   V+   +      +       + +++P GLK+YL  
Sbjct: 61  FESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEAHTQTWHYPDGLKSYLTD 116

Query: 276 KLENRS-----LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGT 329
            + +              +       +      +A+ W EE      SY N I T  GGT
Sbjct: 117 LIADAQEAVPLFSCENYISDDHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLGGT 176

Query: 330 HESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           HE+GL+ A+   +  +  L     R + + SDD+      +LS  + +P+F GQTK KL 
Sbjct: 177 HEAGLKQAVFNAVNNFINLHNLLPRGVKVQSDDVFSKTAFVLSARVLDPQFQGQTKDKLT 236

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR 448
           + DA + V     DP + +L QN     K+ E  I +++ R+R    +++ +K       
Sbjct: 237 NRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSV--KKIEKKKGSGVAV 294

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKL DC        ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN      +++ 
Sbjct: 295 LPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQLF 354

Query: 509 NNQQIMDLVQALGCRTRSQYREEDL---RYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
            N +I D+  A+G          DL   RY K+ I++DADVDG+HI  LLLT FY+    
Sbjct: 355 GNAEIHDISVAIGVDPHGINDNPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHFPK 414

Query: 566 LIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEISR 616
           L+   H+++  PPLFR+    QG     +  YA D+     ILE  +K G  +    ISR
Sbjct: 415 LVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDSILERLQKEGVKETAYSISR 474

Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQ 675
           FKGLGEM   QLK+T M  + R LL+V+I +  +   +T+D   KLMG  +A  R  +++
Sbjct: 475 FKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETRDIFVKLMGKGEAAARRAWME 532

Query: 676 ERASFIDDVG 685
                 + + 
Sbjct: 533 REGDTAE-LD 541


>gi|16330312|ref|NP_441040.1| DNA gyrase B subunit [Synechocystis sp. PCC 6803]
 gi|2501296|sp|P77966|GYRB_SYNY3 RecName: Full=DNA gyrase subunit B; Contains: RecName: Full=Ssp
           gyrB intein
 gi|1652801|dbj|BAA17720.1| DNA gyrase B subunit [Synechocystis sp. PCC 6803]
          Length = 1078

 Score =  346 bits (886), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 174/440 (39%), Positives = 249/440 (56%), Gaps = 10/440 (2%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
            + NY A  I++LEGLEPVR RPGMYIG T  K LHHL  EV+DNA+DE +AGY   IE+
Sbjct: 4   TTTNYGADQIQVLEGLEPVRKRPGMYIGSTGPKGLHHLVYEVVDNAIDEALAGYCTHIEI 63

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
            ++ +G +TVVDNGRGIP + HP    +S LE +LT LHAGGKF    Y++SGGLHGVG+
Sbjct: 64  DINADGSVTVVDNGRGIPTDIHP-TTGRSALETVLTVLHAGGKFGGGGYKVSGGLHGVGV 122

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+ + V V RQ     Q+F RG P+  LE      +  GT+++F PD +IF D 
Sbjct: 123 SVVNALSEWVEVKVWRQGKEHFQRFERGNPIGTLEATPNEGHSTGTQVSFLPDTQIFKDG 182

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             FD   L    +  AYL+  V+  +   +  + K      E+FY+ GG++ Y+     +
Sbjct: 183 IEFDYHTLASRLKELAYLNAGVRITFGDRRADSLKE-----EQFYYEGGIREYVTYMTTD 237

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
           ++ +  EI     EK    +  V         +  +  + N I T +GGTH  GL+  LT
Sbjct: 238 KTPLHEEIIYTSGEKNDV-QVEVALQWCVDAYSDTLLGFANNIRTIDGGTHLEGLKAVLT 296

Query: 340 RGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +   A      +    ++  +++     G++SV + +PEF GQTKTKL + + +  V+
Sbjct: 297 RTLNSVARKRNKLKDGDSNLGGENIREGLTGVISVKVPDPEFEGQTKTKLGNTEVRGIVD 356

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
             + +    +L  NP  A  ++E  ++  +     R+ RE V RK+ +    LPGKLADC
Sbjct: 357 TLVGEALTEFLEFNPGVADAIIEKAVQAFKAAEAARRARELVRRKSVLESSTLPGKLADC 416

Query: 457 SQNIAHGTELFIVEGDSAGG 476
           S      +E+FIVEGDSAGG
Sbjct: 417 SSKDPSESEIFIVEGDSAGG 436



 Score =  266 bits (680), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 86/233 (36%), Positives = 126/233 (54%), Gaps = 9/233 (3%)

Query: 456  CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
                + H     +  G     SAKQ R+R  QA+LPLRGKILN+      KI  N +I  
Sbjct: 851  YDIEVPHTHNFALASGVFVHNSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQA 910

Query: 516  LVQALGCRTR-SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            L+ ALG   +   +    LRY +V+IMTDADVDGAHI +LLLTFFY+   DL++Q ++++
Sbjct: 911  LITALGLGIKGDDFDISSLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRDLVDQGYIYI 970

Query: 575  ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
              PPL+++ +G    Y + +   Q+ + +F  +      I RFKGLGEM+  QL +T M+
Sbjct: 971  ACPPLYKLERGKNHFYCYSDRELQEQISQFPPNAN--YTIQRFKGLGEMMPQQLWDTTMN 1028

Query: 635  ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685
               RT+ RV I        +       LMG +   R +FI+   + +D  D+ 
Sbjct: 1029 PESRTMKRVHIED----AAEADRIFTVLMGDRVAPRREFIETYGTKLDLTDLD 1077


>gi|254410831|ref|ZP_05024609.1| DNA gyrase, B subunit [Microcoleus chthonoplastes PCC 7420]
 gi|196182186|gb|EDX77172.1| DNA gyrase, B subunit [Microcoleus chthonoplastes PCC 7420]
          Length = 856

 Score =  346 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 167/439 (38%), Positives = 251/439 (57%), Gaps = 10/439 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +Y A  I++LEGLE VR RPGMYIG T  + LHHL  EV+DN++DE +AGY   IEV 
Sbjct: 2   TSSYSADQIQVLEGLEAVRRRPGMYIGTTGPRGLHHLVYEVVDNSIDEALAGYCTHIEVD 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
            + +G ++V D+GRGIP + H K   KS LE ++T LHAGGKF    Y++SGGLHGVG+S
Sbjct: 62  FNSDGSVSVTDDGRGIPTDTHSK-TGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGVS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ + VTV R+  + +Q++ RGI +  L  K    N+ GT +TF+PD +IF +  
Sbjct: 121 VVNALSEWVDVTVWREKKVHTQRYERGIAMGELAVKPSKENRTGTSVTFKPDTQIFTNGI 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD + +    +  AYL+G V+  ++  +   E      ++ +++ GG++ Y+      +
Sbjct: 181 EFDYSTVAGRLRELAYLNGGVRITFTDHRISPE-----HQDSYHYEGGIQEYVGYMNRQK 235

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
             +  EI   + E+    +  V         +  +  + N I T +GGTH  GL+  LTR
Sbjct: 236 EPLHQEIIYVQGERNNV-QVEVALQWCVDAYSDNLLGFANNIRTIDGGTHLEGLKTVLTR 294

Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +   A      +    ++  +++     G++SV + EPEF GQTKTKL + + +  V++
Sbjct: 295 TLNAIARKRNKLKESESNLGGENVREGLTGVISVKVPEPEFEGQTKTKLGNTEVRGIVDS 354

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
            + +    YL   P  A  +LE  I+  +     R+ RE V RK+ +    LPGKLADCS
Sbjct: 355 LVGEVLTEYLEFRPQVADSVLEKAIQAFKAAEAARRARELVRRKSVLESSPLPGKLADCS 414

Query: 458 QNIAHGTELFIVEGDSAGG 476
                 +E+FIVEGDSAGG
Sbjct: 415 SRDPAESEIFIVEGDSAGG 433



 Score =  267 bits (681), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 92/261 (35%), Positives = 138/261 (52%), Gaps = 12/261 (4%)

Query: 429 RLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
           R     +++ +R  AI +L     + D      H     +  G     SAKQ R+R  QA
Sbjct: 603 REESPSRKDNHRVVAIERLEKRVDVYDIEVPHTHN--FALASGVFVHNSAKQGRDRQFQA 660

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDADVD 547
           +LPLRGKILN+      KI  N +I  L+ ALG   + +  +  +LRY +++IMTDADVD
Sbjct: 661 ILPLRGKILNIEKTDDAKIYKNTEIQSLITALGLGIKGEEFDPSNLRYHRIVIMTDADVD 720

Query: 548 GAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILE-EFKK 606
           GAHI +LLLTFFY+    L++Q ++ +  PPL+++ +G    Y + +     +++ EF  
Sbjct: 721 GAHIRTLLLTFFYRYQRALVDQGYIHIACPPLYKVERGRNHYYCYSDRELTNLVQNEFPA 780

Query: 607 HGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK 666
           +      I RFKGLGEM+  QL +T M+   RT+ RVEI        +       LMG +
Sbjct: 781 NAN--YTIQRFKGLGEMMPVQLWDTTMNPETRTMKRVEIED----AAEADRIFTVLMGDR 834

Query: 667 ADERFKFIQERASFID--DVG 685
              R +FI+   S +D  D+ 
Sbjct: 835 VAPRREFIETYGSRLDLTDLD 855


>gi|116194666|ref|XP_001223145.1| hypothetical protein CHGG_03931 [Chaetomium globosum CBS 148.51]
 gi|88179844|gb|EAQ87312.1| hypothetical protein CHGG_03931 [Chaetomium globosum CBS 148.51]
          Length = 1715

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 140/698 (20%), Positives = 274/698 (39%), Gaps = 69/698 (9%)

Query: 28  EIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD----------------- 70
                 A +N++A++ Y     + L  L+ +  RP  YIG  +                 
Sbjct: 101 PSAKPAAKSNKTATETY-----QKLTQLQHIIKRPDTYIGSVERTDQKMWVYNKAEKLME 155

Query: 71  ------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHP 122
                    L+ +F E++ NA D          ++V++D   G ++V +NG+GIP+E H 
Sbjct: 156 NRTVGFVPGLYKIFDEILVNAADNSQRDSSMTYLKVTVDRETGEISVENNGKGIPIEMHE 215

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDEL--HVTVARQNTIF 180
           K       E+I   L  G  +D+   +  GG +G G  + N  S +    +  ++    +
Sbjct: 216 K-EKCYIPELIFGHLLTGSNYDDDEKKTVGGRNGYGAKLTNIFSQKFSIELQDSKNGKRY 274

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA---RLLKMTQSKAYL 237
            Q ++  +      K    ++    +++F PD K FG + G D      + +     A  
Sbjct: 275 KQTWTENMGKMEKAKINSNKSADFVKVSFLPDYKRFGMEDGIDDDLEGLIYRRVYDMAGT 334

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
              +K   + +        +    + Y     K+    + +        +   + +++  
Sbjct: 335 VSGIKVWLNGE-------HLKINFKTYCELYAKSIANERGDVAVDGEKPVAKVEFDQQRH 387

Query: 298 HRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI 357
           +    +      + + +  S+ N I T  GGTH + +   +   + K  ELT+ K+  S+
Sbjct: 388 NGRLWQIGFTVSDGSFQQVSFVNNIATTSGGTHVNYIADQICDALAK--ELTKKKKGHSL 445

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
                       ++  I  P F  QTK +L +  +    +  L D F   +     +A++
Sbjct: 446 KPSHFRNHIFIFINCLIDNPAFNSQTKEQLTTKMSAFGSKCVLSDQFLKKV-----KASE 500

Query: 418 LLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
            +  ++E ++ +  +   +    K +                  H   L + EGDSA G 
Sbjct: 501 AIANIMEFADRKADKMMAKSDGNKRSRISNDKLIDANWAGTRRGHECTLILTEGDSARGL 560

Query: 478 AKQAR---NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-L 533
           A   R   +     V PLRGK+LNV  A  E+I  N++I ++ + LG + +  Y +   L
Sbjct: 561 AVAGRAVLDPDRIGVFPLRGKMLNVRDASLEQIMKNKEIENIKKFLGLKHKQNYTDTKGL 620

Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE-QKHLFLISPPLFRITQGTKS---- 588
           RY  ++IM D D+DG+HI  LL+ F   +   L+           P+ ++ QG+      
Sbjct: 621 RYGHLMIMADQDLDGSHIKGLLINFLEVQFPSLLRIDDFFQEFITPVVKVWQGSNPKKPQ 680

Query: 589 --VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646
                 +    +   +   K    + +    KGLG       +    D ++  L + ++ 
Sbjct: 681 NLKTFFNLPQYETWKDS-HKSDLRRWKYKYLKGLGSSSNEDAQIYFKDLDRH-LKKFDVL 738

Query: 647 KDLNSLKDTQDSINKLMGTKADERFKFIQE--RASFID 682
           +   S +  + + +K    KAD R +++      +++D
Sbjct: 739 QPEES-QLFELAFSK---KKADARKEWLGNFVPGTYLD 772


>gi|19909651|dbj|BAB87021.1| DNA gyrase subunit B [Vibrio campbellii]
          Length = 467

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 179/476 (37%), Positives = 274/476 (57%), Gaps = 16/476 (3%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
           D   LHH+  EV+DN++DE +AG+   I V++  +  ++V D+GRGIP E HP+  N S 
Sbjct: 3   DGTGLHHMVFEVVDNSIDEALAGHCKDIVVTIHEDNSVSVTDDGRGIPTEMHPE-ENVSA 61

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P
Sbjct: 62  AEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEP 121

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            +PL          GT+I F P  + F +   F    L K  +  ++L+  V      ++
Sbjct: 122 QAPLAVIGDTEK-TGTQIRFWPSAETFSN-TEFHYDILAKRLRELSFLNSGVSIKLVDER 179

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
           E        + + F F GG++ +++    N++ I  +IF    E++     +VE A+ W 
Sbjct: 180 EAD------KSDHFMFEGGIQAFVEHLNTNKTPIIEKIFHFDFERED--GISVEVAMQWN 231

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISA 366
           +     I  + N I   +GGTH +G R ALTR +  + +      K   +   DD     
Sbjct: 232 DGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGL 291

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-R 425
             ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +L++NP EA  +   +I+  
Sbjct: 292 TAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAA 351

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
                 R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR 
Sbjct: 352 RAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRK 411

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
           NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 412 NQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIII 467


>gi|18147155|dbj|BAB83058.1| DNA gyrase subunit B [Alcanivorax sp. I4]
          Length = 467

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 183/480 (38%), Positives = 271/480 (56%), Gaps = 20/480 (4%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DN++DE +AG+ + I V +  +  +++ DNGRGIPV+ H +   
Sbjct: 1   DTDDGTGLHHMVFEVVDNSIDEALAGFCSEIRVVIHPDESVSIQDNGRGIPVDIHEE-EG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            S  E+ILT LHAGGKFD++TY++SGGLHGVG+SVVNALS+EL +T+ R   +  Q +  
Sbjct: 60  VSAAEVILTVLHAGGKFDDNTYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYRH 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G+P  PLE         GT + FRP  + F +   F    L K  +  ++L+  V+    
Sbjct: 120 GVPDKPLEVVG-TTESSGTSVHFRPSSETFSN-IKFHYDILAKRLRELSFLNSGVRIHLK 177

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWA 305
            ++   E       E F + GGL  ++     N++ ++         E+ G    +VE A
Sbjct: 178 DERSGEE-------EVFEYEGGLSAFVSYLNVNKTPLNQVFHFQYDREEDGI---SVEVA 227

Query: 306 IAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDL 362
           + W +     I  + N I   +GGTH +G R ALTR +  Y +      K   +   DD 
Sbjct: 228 MQWNDSYQENIFCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDKEGLLKKEKANPSGDDA 287

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
                 ++SV + +P+F+ QTK KLVS + +  VE  + + F  YL++NP EA  + + +
Sbjct: 288 REGLTAVISVKVPDPKFSSQTKDKLVSSEVKGAVEQTMGELFQDYLLENPGEAKAITQKI 347

Query: 423 I-ERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
           I         R+ +    RK A+    LPGKLADC Q     +EL+IVEGDSAGGSAKQ 
Sbjct: 348 IDAARARDAARKAREMTRRKGALDIAGLPGKLADCQQKDPALSELYIVEGDSAGGSAKQG 407

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
           R+R NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY ++II
Sbjct: 408 RDRKNQAILPLKGKILNVEKARFDKMLSSQEVGTLITALGCGIGRDEYNIDKLRYHRIII 467


>gi|13517013|dbj|BAB40389.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04451]
          Length = 474

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 187/483 (38%), Positives = 279/483 (57%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALS+ L   V R   I+ Q++ RG  L P++      +KR
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSEHLKAIVHRDGKIWEQEYERGKTLYPVKAVGDT-DKR 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF+PDP+IF     ++   L    +  AYL+  +       +   E+ G  E E F
Sbjct: 60  GTIVTFKPDPRIFQQTLEYNYDTLASRLRELAYLNKGITIHLIDQR-ATEEDGSFEGETF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           +   GLK +++    NR  +  +  + + EK G     VE A+ +       + SY N I
Sbjct: 119 HSEEGLKEFIKFLDGNREPLMQDAISFEGEKNGVP---VEVAMIYNTSYAENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLSGFRRGLTHTLKKYADESGMLDKLKFDIAGDDFREGLTAIVSVKVAEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + +    V  A+ +    YL +NP  A  +++ VI  ++ R   +K RE+  
Sbjct: 236 GQTKTKLGNREVSACVSQAVSEMLTDYLEENPDTAKTIVQKVILAAQARHAAQKAREMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV
Sbjct: 296 RKTVMSIGGLPGKLSDCSEQDPEKCEVFLVEGDSAGGTAKQGRDRTFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASL 554
             A + K+  N++I ++  ALG    ++   +      LRY K++IM DAD+DG+HIA+L
Sbjct: 356 EKAMTHKVFENEEIKNIFTALGVTIGTEEDSKALNLSKLRYHKIVIMCDADIDGSHIATL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +LIE  H+++ +PPL+ + +G K  YA +++ +  I++EF +  K    I
Sbjct: 416 ILTFFFRYMKELIEAGHVYIATPPLYLVKKGNKKQYAWNDKERDDIVKEFGESSK----I 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|47094330|ref|ZP_00232030.1| DNA topoisomerase II (N-terminal region) domain protein [Listeria
           monocytogenes str. 4b H7858]
 gi|47017301|gb|EAL08134.1| DNA topoisomerase II (N-terminal region) domain protein [Listeria
           monocytogenes str. 4b H7858]
          Length = 452

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 163/454 (35%), Positives = 242/454 (53%), Gaps = 23/454 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + Y+  SI++LEGLE VR RP MYIG TD + LHHL  E++DN++DE +AG+   I V+L
Sbjct: 4   NEYNDDSIQVLEGLEAVRKRPAMYIGSTDVRGLHHLVYEIVDNSVDETLAGFGKKIVVTL 63

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGVGIS 160
             +G ++V D GRG+PV  H     KST+E+ILT LHAGGKF     Y+ SGGLHGVG S
Sbjct: 64  HVDGSVSVSDEGRGMPVGMHK--TGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGVGSS 121

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ L VT+ R    + QKF  G       KK       GT I F+PDP IF    
Sbjct: 122 VVNALSEWLVVTINRDGATYQQKFKDGGKPDGTLKKIGKSKATGTTIRFKPDPAIFPT-T 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F+   L +  +  A+L   +      ++       +   E F+F  G+K +++   E +
Sbjct: 181 SFNYETLSERLRESAFLLKGMLIELIDER-------VGMAEAFHFEEGVKNFVEYINEGK 233

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
            ++     + + E        VE A  + +     I S+ N + T   G+HESG++ A+T
Sbjct: 234 DVLHPV-ASFEGENATI---EVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMT 289

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395
           R    YA       ++  ++   D+      +LS+ + E   +F GQTK KL + +A++ 
Sbjct: 290 RIFNDYARRVNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQA 349

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGK 452
           V+  + +   ++L +NP  ++ L++  ++  E R   RK RE  R    +K     L GK
Sbjct: 350 VDAVVAEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGK 409

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
           L        +  EL++VEGDSAGGSAKQ R+R  
Sbjct: 410 LTPAQSRNPNKNELYLVEGDSAGGSAKQGRDRRF 443


>gi|297518854|ref|ZP_06937240.1| DNA gyrase subunit B [Escherichia coli OP50]
          Length = 348

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 134/357 (37%), Positives = 208/357 (58%), Gaps = 16/357 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N
Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
           TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVK 346


>gi|331028975|gb|AAM54162.3|L07144_1 Hypothetical protein R05D3.12a [Caenorhabditis elegans]
          Length = 1170

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 142/717 (19%), Positives = 251/717 (35%), Gaps = 74/717 (10%)

Query: 9   FSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGG 68
           F            K  +S             A+  Y+  S       E V +RP  YIGG
Sbjct: 12  FCISTSHRTTVVLKNTRSFCNNIPSTSFASEAAAKYEKKSPT-----EHVLLRPDTYIGG 66

Query: 69  ------------------------TDEKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD- 102
                                   T    L  +F E++ NA D        N +EV LD 
Sbjct: 67  VAMREDQIIWLRDSENRKMIAKEVTYPPGLLKIFDEILVNAADNKARDSSMNRLEVWLDR 126

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
               ++V +NG G+PVE HP         ++   L     +D+S  +  GG +G G  + 
Sbjct: 127 ETARISVWNNGSGLPVEIHP-TEGIYVPTLVFGNLFTSSNYDDSEIKTVGGRNGYGAKLC 185

Query: 163 NALSDELHVTVA--RQNTIFSQKFSRGIPLSPLEKKEKVRNKR---GTRITFRPDPKIFG 217
           N  S E  V     R    F QK+   +      +  ++ ++     T++ F PD + F 
Sbjct: 186 NIFSKEFIVETVDTRIKRRFRQKWYDNMKKCNEAEVVEILDETVKDYTKVEFVPDLERFQ 245

Query: 218 DKA--GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
                      + +     A    R    +   ++          + F     L      
Sbjct: 246 IDKLSDDVIDLIGRRVFEVAATLPRDVDVYLNGQKCDVDGFEDYVKMFNDSSSLL----- 300

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLR 335
                   +     G  ++      +           P+I S+ N I T++GG+H   + 
Sbjct: 301 ----FLHPTPRWHVGVAKRNNFFGESHVVL-------PKIVSFVNNINTEKGGSHVDYVM 349

Query: 336 VALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
             +   IK   +        S+    +  +    ++  I  P F  QTK  L +      
Sbjct: 350 DKIVNIIKPIVDSKLGDPTKSVKPAVIKNNLSIFINCLIENPSFESQTKETLTTKAKNFG 409

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
                         +       ++E V+   +++L     + V+  +    ++L      
Sbjct: 410 SIFECDAKKTAEWAEQSGLIEDIVEEVLNMKKKKLP---GKRVSVSSVRDIVKLEDAEWA 466

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
                A    L + EGDSA   A        R    V PL+GK+LNV++    +   N++
Sbjct: 467 GITGTAEKCTLILTEGDSAKALALAGLEVLGRETYGVFPLKGKLLNVSNLDDARASKNEE 526

Query: 513 IMDLVQALGCRTRSQY--REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE-Q 569
           I +L++ LG +         E LRY +++I+ D D DG+HI  L++ F ++    L+   
Sbjct: 527 ISNLLRILGLKFEDSNSITRESLRYGRLLILADQDEDGSHIKGLIVNFIHKFWPSLVHTD 586

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
             +     PL +  +G K          +K  +       GK +I  +KGLG   +++ +
Sbjct: 587 GFIQSFRTPLLKAKKGDKVRSFFSMNEYRKWAD---VEEGGKWKIKYYKGLGTSTSNEAR 643

Query: 630 ETAMDANKRTLLRVEINK-DLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           E   D +  T   V             + + ++    K+DER ++I+   + I +  
Sbjct: 644 EYFSDLDHHT---VNFKYTGTTDDDAIRMAFDR---DKSDERKEWIRRSENEITNED 694


>gi|13516993|dbj|BAB40379.1| DNA gyrase B subunit [Cytophaga sp. MBIC01355]
 gi|13516995|dbj|BAB40380.1| DNA gyrase B subunit [Cytophaga sp. MBIC01356]
          Length = 474

 Score =  344 bits (882), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 189/483 (39%), Positives = 277/483 (57%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALS+ L  TV R   I+ Q++ RG  L P++      +KR
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSEHLKATVHRDGKIWEQEYERGKTLYPVKAVGDT-DKR 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF+PDP+IF     +    L    +  AYL+  +       +   E     E E F
Sbjct: 60  GTIVTFKPDPEIFKQTLEYSYDTLASRLRELAYLNKGITIHLIDKRVKKEDG-SFEGETF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           +   GLK ++Q    NR  +  E  + + EK G     VE A+ +       + SY N I
Sbjct: 119 HSEEGLKEFIQFLDGNREPLMQEAISFEGEKNGVP---VEVAMIYNTSYAENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLSGFRRGLTHTLKKYADESGMLDKLKFDIAGDDFREGLTAIVSVKVAEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + +   +V  A+ +    YL ++P  A  +++ VI  ++ R   +K RE+  
Sbjct: 236 GQTKTKLGNREVSASVSQAVSEMLTDYLEEHPDTAKTIVQKVILAAQARHAAQKAREMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R  QA+LPLRGKILNV
Sbjct: 296 RKTVMSIGGLPGKLSDCSEQDPAQCEVFLVEGDSAGGTAKQGRDRKFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASL 554
             A + K+  N++I ++  ALG    ++   +      LRY K++IM DAD+DG+HIA+L
Sbjct: 356 EKAMTHKVFENEEIKNIFTALGVTIGTEEDSKALNLSKLRYHKIVIMCDADIDGSHIATL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +LIE  H+++ +PPL+ I +G K  YA +++ +  I++EF +  K    I
Sbjct: 416 ILTFFFRYMKELIEAGHVYIATPPLYLIKKGAKKQYAWNDKERDAIVKEFGESSK----I 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|27530064|dbj|BAC53887.1| DNA gyrase B subunit [Tatlockia micdadei]
          Length = 466

 Score =  344 bits (882), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 178/479 (37%), Positives = 279/479 (58%), Gaps = 19/479 (3%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DN++DE +AGY + I V +  +  +TV D+GRGIPV+ H K   
Sbjct: 1   DTDDGTGLHHMVFEVVDNSIDEALAGYCHEISVIIHADESITVKDDGRGIPVDIH-KEEG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           +S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+ELH+T+ R   +  Q +  
Sbjct: 60  RSAAEVIMTILHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLTIRRNGKVHEQHYRN 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G+P +PL    +  N  GT++ F+P    F +   F    L K  +  ++L+  V+    
Sbjct: 120 GVPDAPLAMTGEA-NTTGTQVWFKPSANTFSN-IEFHYDILAKRLRELSFLNSGVRIHLY 177

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
            ++         +++ F + GG+K +++    N++ I   +F+   E+      +VE ++
Sbjct: 178 DER-------TQKQDTFCYEGGIKAFVEHLNRNKTPIMPVVFSLSGERDNI---SVELSM 227

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W +     I  + N I   +GGTH +G R ALTR +  Y E      K  I+   DD  
Sbjct: 228 QWNDSFQETIFCFTNNIPQRDGGTHLAGFRAALTRTLNSYIENEGYAKKAKITTTGDDAR 287

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                +LSV + +P+F+ QTK KLVS + +  VE+ + +  + +L++NP  A  ++  +I
Sbjct: 288 EGLTAVLSVKVPDPKFSSQTKDKLVSSEVKAVVESLVSEKLNDFLLENPTVAKSIVGKII 347

Query: 424 E-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           +        R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ R
Sbjct: 348 DAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGR 407

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
           +R  QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC     +Y  + +RY ++II
Sbjct: 408 DRKFQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGPDEYDPDKIRYHRIII 466


>gi|71034009|ref|XP_766646.1| DNA gyrase subunit B [Theileria parva strain Muguga]
 gi|68353603|gb|EAN34363.1| DNA gyrase subunit B, putative [Theileria parva]
          Length = 905

 Score =  344 bits (882), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 195/666 (29%), Positives = 298/666 (44%), Gaps = 104/666 (15%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + Y +  I +LEGL  VR RPGMYIG T E+ +H L  EV+DN++DE +AG+ N I VSL
Sbjct: 104 EEYRSDDIIVLEGLNAVRKRPGMYIGNTGERGVHQLLYEVLDNSVDEYLAGFCNKITVSL 163

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---------------- 145
             +G + V DNGRGIP +  PK   KS LE +LT LH+GGKF +                
Sbjct: 164 MNDGSVEVSDNGRGIPCDISPK-TGKSGLETVLTVLHSGGKFQDIFPPNSISVKPDDKND 222

Query: 146 --------------STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG---I 188
                           YE S GLHGVG+SVVNALS+ L V V + +  +  + S+G    
Sbjct: 223 SKSSKKGSKELEEKRIYEYSSGLHGVGLSVVNALSEFLIVDVFKGSKSYHIELSKGNITK 282

Query: 189 PLSPLEKKEKVRNKR------GTRITFRPDPKIFGDKAG--------------------- 221
           PL+   + E            GT I F PD K                            
Sbjct: 283 PLTEFSEPETTDQPNPNLKKYGTTIRFLPDYKHIFKTHHQHTETENEENSGTSTDKNDLD 342

Query: 222 ---------FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
                    F    +    +  +YL+  +       +   E         ++  GG +++
Sbjct: 343 TKCSGCKNGFILDLIKTRAKELSYLNPGLFIKLVDYRISNENNVK----LYHNTGGTRSF 398

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHE 331
           L+  +++++ +   I      +   +   VE + +W  E    +       ++   GTH 
Sbjct: 399 LEELIKDKTPLYKPISYITI-RGVINNVNVEVSFSWSLESYTALIKAYANNVSTIAGTHI 457

Query: 332 SGLRVALTRGIK----KYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
            G + ++TR +     KY     N + ++   + +      ++SV +   EF GQTKTKL
Sbjct: 458 DGFKTSITRCVNGLLKKYGYFRGNVKPLN--GEFIREGMTAVISVKLTGAEFDGQTKTKL 515

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIR-K 446
            +   +   E  + + F + L  N      +        +     R  +++ R+ +    
Sbjct: 516 GNALVKTVTEKIVNEQFTNILENNKELLLAIHNKSQAAKKAFDAARSAKDLIRQKSSSLI 575

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE- 505
             + GKL +CS N     ELFIVEG+SA G+AKQARNR  QAVLPL+GKILN+       
Sbjct: 576 SNISGKLTECSSNNVENNELFIVEGESAAGNAKQARNRQFQAVLPLKGKILNIEKITDNS 635

Query: 506 KIRNNQQIMDLVQALGCRTRSQYR------------------EEDLRYEKVIIMTDADVD 547
           K+  NQQI  L+ ++G                            +  Y K+I++TDADVD
Sbjct: 636 KVLENQQIQLLMNSIGISINPVTWRQKDLIAGTDVALDPFIEMNNSTYGKIILLTDADVD 695

Query: 548 GAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT--QGTKSVYAHDEEHKQKILEEFK 605
           G+H+ SLLL   Y+    L     +++ SPPL+RIT  +  K +Y+  +EH  + ++E  
Sbjct: 696 GSHLKSLLLCLLYRLCPSLYLHGRVYVASPPLYRITNLRNKKYIYSWSQEHLLRTIKELN 755

Query: 606 KHGKGK 611
              + K
Sbjct: 756 SKYEHK 761



 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 37/106 (34%), Positives = 53/106 (50%), Gaps = 11/106 (10%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           +TQ  +S    DE     I +   K  K  I I RFKGLGEM+A+QL ET MD  KR L 
Sbjct: 808 VTQDKQS----DELDLYNINKTLSKTNKHLI-IQRFKGLGEMMANQLWETTMDPKKRILK 862

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER--ASFIDDVG 685
           R+ ++       +  + I  LMG+    R ++I     A  ++D+ 
Sbjct: 863 RIVVSHQP----EISEIIKLLMGSDVQSRKQYIFNNSQAFHLEDLD 904


>gi|13516991|dbj|BAB40378.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC05204]
          Length = 474

 Score =  344 bits (882), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 181/483 (37%), Positives = 280/483 (57%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALS+ L  TV R+  I+ Q++ RG  + P++   +  +K 
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSEHLKATVYREGKIWEQEYERGKTMYPVKVVGE-SDKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF+PDP+IF     ++   L    +  AYL+  +       +   ++ G  E E F
Sbjct: 60  GTIVTFKPDPQIFQQTLEYNYDTLASRMRELAYLNRGITVHLVD-RRNKKEDGSFEGETF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           +   GL  +++    NR  + +++ + + EK G     VE A+ +       + SY N I
Sbjct: 119 HSEEGLSEFVKFLDGNREPLMNDVISFEGEKNGVP---VEVAMVYNTSYAENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLSGFRRGLTHTLKKYADSSGMLDKLKFDISGDDFREGLTAIVSVKVAEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + +   +V  A+ +    YL ++P +A  +++ VI  ++ R   +K RE+  
Sbjct: 236 GQTKTKLGNREVSASVSQAVSEMLTDYLEEHPEDAKTIVQKVILAAQARHAAQKAREMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKL+DCS+      EL++VEGDSAGG+AK  R+R+ QA+LPLRGKILNV
Sbjct: 296 RKTVMSIGGLPGKLSDCSEQDPEKCELYLVEGDSAGGTAKAGRDRNFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASL 554
             A   K+  N++I ++  ALG    ++          LRY K++IM DAD+DG+HIA+L
Sbjct: 356 EKAMQHKVFENEEIKNIFTALGVTIGTEEDPRALNLSKLRYHKIVIMCDADIDGSHIATL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +L+E  H+++ +PPL+ + +G K  YA  ++ +  I+ EF ++ K    I
Sbjct: 416 ILTFFFRYMRELVENGHVYIATPPLYLVKKGAKKQYAWSDKERDAIISEFGENSK----I 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|7546302|pdb|1EI1|A Chain A, Dimerization Of E. Coli Dna Gyrase B Provides A Structural
           Mechanism For Activating The Atpase Catalytic Center
 gi|7546303|pdb|1EI1|B Chain B, Dimerization Of E. Coli Dna Gyrase B Provides A Structural
           Mechanism For Activating The Atpase Catalytic Center
          Length = 391

 Score =  344 bits (881), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 137/380 (36%), Positives = 216/380 (56%), Gaps = 16/380 (4%)

Query: 49  IRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFL 107
           I++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V++  +  +
Sbjct: 9   IKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSV 68

Query: 108 TVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSD 167
           +V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS 
Sbjct: 69  SVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQ 127

Query: 168 ELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARL 227
           +L + + R+  I  Q +  G+P +PL    +     GT + F P  + F +   F+   L
Sbjct: 128 KLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNVTEFEYEIL 186

Query: 228 LKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEI 287
            K  +  ++L   V       ++  E       + F++ GG+K +++   +N++ I   I
Sbjct: 187 AKRLRELSFLDSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKNKTPIHPNI 239

Query: 288 FTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYA 346
           F   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y 
Sbjct: 240 FYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYM 296

Query: 347 ELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF 404
           +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +  
Sbjct: 297 DKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELL 356

Query: 405 DHYLVQNPIEATKLLEWVIE 424
             YL++NP +A  ++  +I+
Sbjct: 357 AEYLLENPTDAKIVVGKIID 376


>gi|13516999|dbj|BAB40382.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04442]
 gi|13517003|dbj|BAB40384.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04444]
          Length = 474

 Score =  344 bits (881), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 188/483 (38%), Positives = 277/483 (57%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALS+ L  TV R   I+ Q++ RG  L P++      +KR
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSEHLKATVHRDGKIWEQEYERGKTLYPVKAVGDT-DKR 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF+PDP+IF     +    L    +  AYL+  +       +   E     E E F
Sbjct: 60  GTIVTFKPDPEIFKQTLEYSYDTLASRLRELAYLNKGITIHLIDKRAKKEDG-NFEGETF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           +   GLK +++    NR  +  E  + + EK G     VE A+ +       + SY N I
Sbjct: 119 HSEEGLKEFIKFLDGNREPLMQEAISFEGEKNGVP---VEVAMIYNTSYAENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLSGFRRGLTHTLKKYADESGMLDKLKFDIAGDDFREGLTAIVSVKVAEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + +   +V  A+ +    YL ++P  A  +++ VI  ++ R   +K RE+  
Sbjct: 236 GQTKTKLGNREVSASVSQAVSEMLTDYLEEHPDTAKTIVQKVILAAQARHAAQKAREMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R  QA+LPLRGKILNV
Sbjct: 296 RKTVMSIGGLPGKLSDCSEQDPAQCEVFLVEGDSAGGTAKQGRDRKFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASL 554
             A + K+  N++I ++  ALG    ++   +      LRY K++IM DAD+DG+HIA+L
Sbjct: 356 EKAMTHKVFENEEIKNIFTALGVTIGTEEDSKALNLSKLRYHKIVIMCDADIDGSHIATL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +LIE  H+++ +PPL+ I +G K  YA +++ +  I++EF +  K    I
Sbjct: 416 ILTFFFRYMKELIEAGHVYIATPPLYLIKKGAKKQYAWNDKERDAIVKEFGESSK----I 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|311337325|gb|ADP89912.1| DNA gyrase subunit B [Amycolatopsis marina]
          Length = 470

 Score =  343 bits (880), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 180/477 (37%), Positives = 268/477 (56%), Gaps = 21/477 (4%)

Query: 72  KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLE 131
           + LHHL  EV+DN++DE +AGYA  +EV+L  +G + VVD+GRGIPV  HPK   + TLE
Sbjct: 1   RGLHHLIWEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVGMHPK-EKRPTLE 59

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           I+LT LHAGGKFD+ +Y +SGGLHGVG+SVVNALS  L V V     I+ Q++    P  
Sbjct: 60  IVLTVLHAGGKFDSDSYAVSGGLHGVGVSVVNALSRRLDVEVHTDGRIWRQQYDHSKPGE 119

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
            ++     R   GT +TF  DP+IF     +    + +  Q  A+L+  +      ++  
Sbjct: 120 LIDAGPASR--TGTSLTFWADPEIFETTH-YSVETVSRRLQEMAFLNKGLTIVLRDERPE 176

Query: 252 AE----------KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
           AE          K     +  +++PGGL+ +++    ++  I   +   +++  G     
Sbjct: 177 AEPTEDAVDAAGKPANITERTYHYPGGLEDFVKHINGSKDPIHKSVIGFESQGDGVQ--- 233

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISII 358
           VE A+ W  +  P + ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++ 
Sbjct: 234 VEVAMQWNTQYTPSVYTFANTINTPEGGTHEEGFRAALTRVVNSYAREKKLLKEKDTNLT 293

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+      I+SV + EP+F GQTK KL + +A+  V+    +    +  +NP EA  +
Sbjct: 294 GDDVREGLAAIISVKLAEPQFEGQTKQKLGNSEAKSFVQTTTNEWLSDWFERNPSEARTI 353

Query: 419 LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           +   +  ++ R+  RK R+ V RK A+    LPGKL DC        EL+IVEGDSAGGS
Sbjct: 354 INKAVSSAQARMAARKARDLVRRKGALDIGGLPGKLKDCRSTKPEECELYIVEGDSAGGS 413

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
           AK+ R+   QA+LP+RGKI+NV  A  +K+  N ++  L+ ALG     ++  E LR
Sbjct: 414 AKEGRDSMYQAILPIRGKIINVEKARIDKVLKNNEVQSLITALGTGIHDEFDLEKLR 470


>gi|308483878|ref|XP_003104140.1| hypothetical protein CRE_01053 [Caenorhabditis remanei]
 gi|308258448|gb|EFP02401.1| hypothetical protein CRE_01053 [Caenorhabditis remanei]
          Length = 1165

 Score =  343 bits (879), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 128/658 (19%), Positives = 234/658 (35%), Gaps = 65/658 (9%)

Query: 56  EPVRMRPGMYIGGTD------------------------EKALHHLFSEVIDNAMDEVIA 91
           E V +RP  YIGG                             L  +F E++ NA D    
Sbjct: 50  EHVLLRPDTYIGGVAMRESEIVWLRSLESKQMYTKEVSYPPGLLKIFDEILVNAADNKSR 109

Query: 92  G-YANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
               N +EV +D     ++V +NG G+PVE HP   N     ++   L     +D+S  +
Sbjct: 110 DSNMNRLEVWVDRKTSRISVWNNGGGLPVEIHP-SENIYVPTLVFGNLFTSSNYDDSEIK 168

Query: 150 ISGGLHGVGISVVNALSDELHVTV--ARQNTIFSQKFSRGIPLSPLEK-----KEKVRNK 202
             GG +G G  + N  S E  V    +R    F Q++   +      +      EK  + 
Sbjct: 169 TVGGRNGYGAKLCNIFSTEFIVETVDSRTKKKFRQRWFNNMKECDEAEIVDLQNEKTTDY 228

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
                            +      + K               +   ++            
Sbjct: 229 TKVEFVPDLKRFQMDCLSDDIIDLIGKRIFEVTATLPNDVQVYLNGQKCEVNGFEEYVRM 288

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
           F +                +  ++  T   + +      V              S+ N I
Sbjct: 289 FNYYDPSSFLFLHPTSRWHVGVAKRNTYIGDDQLILPKVV--------------SFVNNI 334

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T++GGTH   +   +   IK   +    +   S+    +  +    ++  I  P F  Q
Sbjct: 335 NTEKGGTHVDYVMDKIVNVIKPLVDSRLAEFGKSVKPAMIKNNLSIFINCLIENPSFESQ 394

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK  + +                    +      +++E  +   ++++     + V   +
Sbjct: 395 TKETVTTKPKLFGSSFDCDHKKVTKWAEESGFVEEIVEEALNLKKKKVP---AKRVTSSS 451

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNV 499
               ++L           +    L + EGDSA   A        R    V PL+GK++NV
Sbjct: 452 VRDIVKLEDAEWAGISGKSEKCTLILTEGDSAKALALSGLEVLGRETYGVFPLKGKLVNV 511

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQ-YREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           ++    +   N++I ++++ LG R   +   +E +RY +++I+ D D DG+HI  L++ F
Sbjct: 512 SNIDDVRASKNEEISNVMRILGLRFEEEAPTQESMRYGRLLILADQDEDGSHIKGLVINF 571

Query: 559 FYQEMYDLIE-QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
            ++    LI  +  +     PL +  +G K          QK  EE +    GK +I  +
Sbjct: 572 IHKFWPSLIRSRDFIQSFRTPLLKAKKGDKVKSFFSINEYQKWAEETE----GKWKIKYY 627

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675
           KGLG   + + KE   D +   +        LN  K  + + ++    K+DER ++I+
Sbjct: 628 KGLGTSTSIEAKEYFSDLDHHVINF--KYTGLNDDKAIRMAFDR---EKSDERKEWIR 680


>gi|13517029|dbj|BAB40397.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04466]
          Length = 474

 Score =  343 bits (879), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 178/483 (36%), Positives = 276/483 (57%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALS+ L  TV R   I+ Q++ RG  + P++      ++ 
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSEHLKATVHRDGKIWEQEYERGKTMYPVKTVGD-SDRT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF+PDP+IF     ++   L    +  AYL+  +       +   ++ G  E E F
Sbjct: 60  GTIVTFKPDPQIFQQTLEYNYDTLASRMRELAYLNKGITVHLVD-RRHKKEDGSFEGETF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           +   GL  +++    NR  +  ++ + + EK G     VE A+ +       + SY N I
Sbjct: 119 HSENGLPEFVKFLDGNREPLMKDVISFEGEKNGVP---VEVAMVYNTSYAENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLSGFRRGLTHTLKKYADNSGMLDKLKFDISGDDFREGLTAIVSVKVAEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + +   +V  A+ +    YL ++P +A  +++ VI  ++ R   +K RE+  
Sbjct: 236 GQTKTKLGNREVSASVSQAVSEMLTDYLEEHPEDAKAIVQKVILAAQARHAAQKAREMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKL+DCS+      EL++VEGDSAGG+AK  R+R+ QA+LPLRGKILNV
Sbjct: 296 RKTVMSIGGLPGKLSDCSEQDPEKCELYLVEGDSAGGTAKAGRDRNFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASL 554
             A   K+  N++I ++  ALG    ++          LRY K++IM DAD+DG+HIA+L
Sbjct: 356 EKAMQHKVFENEEIKNIFTALGVTIGTEEDPRALNLSKLRYHKIVIMCDADIDGSHIATL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +L+E  H+++ +PPL+ + +G+K  Y   ++ + +I+ +F    K    I
Sbjct: 416 ILTFFFRYMRELVENGHVYIATPPLYLVKKGSKKQYVWSDKERDEIIGQFGDGSK----I 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|290490548|dbj|BAI79261.1| DNA gyrase subunit B [Tomitella biformata]
 gi|290490550|dbj|BAI79262.1| DNA gyrase subunit B [Tomitella biformata]
          Length = 502

 Score =  342 bits (878), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 186/510 (36%), Positives = 278/510 (54%), Gaps = 38/510 (7%)

Query: 68  GTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNK 127
            T E+ LHHL  EV+DN++DE +AGYA+ + VSL  +G + V D+GRGIPVE H      
Sbjct: 1   STGERGLHHLVWEVVDNSIDEAMAGYASAVHVSLLDDGAVQVSDDGRGIPVEMHE--SGA 58

Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187
            T+++++T LHAGGKFD+ +Y +SGGLHGVGISVVNALS ++ V +AR    + Q F+  
Sbjct: 59  PTVQVVMTQLHAGGKFDSESYAVSGGLHGVGISVVNALSTKVEVDIARDGYNWKQNFNNA 118

Query: 188 IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247
           +P  PLE+        GT + F  DP IF     +D   + +  Q  A+L+  +    + 
Sbjct: 119 VP-EPLEQDGPTS-ATGTTVRFWADPTIFET-TTYDFETVSRRLQEMAFLNKGLTITLTD 175

Query: 248 DKEIAEKYGIP--------------------------EKEEFYFPGGLKTYLQTKLENRS 281
           ++  A++                              ++  +++PGGL  Y++     + 
Sbjct: 176 ERVTADEITDEVVGDVAEAPKSAEEQAEETKAAKPRVKQRTYHYPGGLVDYVKHINRTKQ 235

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I + I     +  G     VE A+ W       + ++ NTI T EGGTHE G R ALT 
Sbjct: 236 AIHTTIIGFNAKGTGH---EVEVAMQWNAGYSESVHTFANTINTAEGGTHEEGFRSALTT 292

Query: 341 GIKKY--AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            + KY   +     +  ++  DD+      ++SV + EP+F GQTKTKL + + +  V+ 
Sbjct: 293 TVNKYAKEKKLLKDKDPNLTGDDIREGLAAVVSVKVVEPQFEGQTKTKLGNTEVKSFVQR 352

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
           A  +  D++   NP EA  ++   +  ++ R+  RK RE V RK+A     LPGKLADC 
Sbjct: 353 ACNEHIDYWFEANPAEAKVIVTKAVSSAQARMAARKARELVRRKSATDLGGLPGKLADCR 412

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
            N     E++IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++
Sbjct: 413 SNDPSKCEVYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAII 472

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVD 547
            ALG     ++    LRY K+++M DADVD
Sbjct: 473 TALGTGIHDEFDIAKLRYHKIVLMADADVD 502


>gi|10281022|dbj|BAB13752.1| type II DNA topoisomerase [Candida parapsilosis]
          Length = 779

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 128/635 (20%), Positives = 231/635 (36%), Gaps = 39/635 (6%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPN 126
           T    L+ +F E++ NA D  I       I+V +D  N  + V ++G+GIPVE H K   
Sbjct: 10  TIVPGLYKIFDEILVNAADNKIRDPSMKNIKVRIDPENNVIQVFNDGKGIPVEMHTK-EK 68

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR--QNTIFSQKF 184
               E+I   L     +D+   +++GG +G G  + N  S +  V  A      ++ Q +
Sbjct: 69  MYIPELIFGNLLTSSNYDDDQKKVTGGRNGFGAKLCNIFSTQFEVETADLNTGKLYKQTW 128

Query: 185 SRGIPLSPLEKKEK-VRNKRGTRITFRPDPKIFGDK--AGFDAARLLKMTQSKAYLSGRV 241
           +  +      K       K  T+ITF+PD   F          + L +            
Sbjct: 129 TDNMTKVGKPKITALKTKKEYTKITFKPDLSKFDMDSLDEDLLSVLRRRVYDLCGTVRNC 188

Query: 242 KTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
               +  +             F     +      +               T         
Sbjct: 189 NIYLNDKRLSVN--------SFKSYVEMYVKAIKERSPEPEGEGAPKNFTTIVHEVFNDR 240

Query: 302 VEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKK-YAELTQNKRAISIISD 360
            E A A  +      S+ N+I T  GGTH   +   +   + +  ++  + K+ + I  +
Sbjct: 241 WEVAFAVSDGTFNQVSFVNSIATTAGGTHVKYVSDQIISKLVETLSKKEKGKKKLMIKPN 300

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           ++  +    ++  I  P F  QTK +L +  +Q   +       +           + + 
Sbjct: 301 EVRDNMFIFINCLIENPAFTSQTKEQLTTKVSQFGGKEKFVASDNLIARVLKTGIAEKIR 360

Query: 421 WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
            +   +E++  ++       +   +   +    A           L + EG SA   A  
Sbjct: 361 DIANANEDKALQKVDGSRKSRIKGQVNLVDANKAGTKDGTK--CTLILTEGLSALNLAVA 418

Query: 481 ARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED---LR 534
                 R      PLRGK+LNV  A +++I  N +I  L Q +G + +  Y  E+   LR
Sbjct: 419 GLTVIGRDYYGCFPLRGKLLNVREASADQIAKNAEINALKQIIGLQHKKAYTAENIKSLR 478

Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQG----TKSV 589
           Y  ++IMTD D DG+HI  L++ F       L++    L     P+ ++T       K +
Sbjct: 479 YGHIMIMTDQDQDGSHIKGLIINFLETSFPGLLDIPGFLLEFITPIVKVTVKGRGAKKVI 538

Query: 590 YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDL 649
             +     +   E   +    +     +KGLG     + +E     ++  L R       
Sbjct: 539 PFYSMPEFEAWRE--GEGQTCRWTQKYYKGLGTSTPMEAREYFTALDRH-LKRFH-ALQG 594

Query: 650 NSLKDTQDSINKLMGTKADERFKFIQE--RASFID 682
                   + +K    KADER +++Q     + +D
Sbjct: 595 EDSNYIDLAFSK---KKADERKEWLQNFVPGNQLD 626


>gi|300709311|ref|XP_002996821.1| hypothetical protein NCER_100008 [Nosema ceranae BRL01]
 gi|239606147|gb|EEQ83150.1| hypothetical protein NCER_100008 [Nosema ceranae BRL01]
          Length = 713

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 141/684 (20%), Positives = 258/684 (37%), Gaps = 84/684 (12%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----------------------EKA 73
            ++  + Y          LE + +RP  YIG  +                          
Sbjct: 2   TKTIEETYQKK-----TPLEHILLRPDTYIGSVEKEVQNMYIWDEANGKIVSKNISFVPG 56

Query: 74  LHHLFSEVIDNAMDEVIAGY-ANLIEVSLDG-NGFLTVVDNGRGIPVENHPKFPNKSTLE 131
           L+ +F E+I NA D  I       I+V ++  +  ++V ++G+G+P++ H +       E
Sbjct: 57  LYKIFDEIIVNAADNKIRDPKMKNIKVEINKEDNIISVYNDGKGVPIKIHSQ-EKVYVPE 115

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN--TIFSQKFSRGIP 189
           +I   L     +D+   +++GG +G G  + N  S E  V  + Q    I+ Q F   + 
Sbjct: 116 LIFGQLLTSSNYDDKEKKVTGGRNGYGAKLCNIFSSEFVVETSDQEVGKIYKQVFKNNMT 175

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKA--GFDAARLLKMTQSKAYLSGRVKTCWSC 247
           ++   + +  +    T+ITF+PD   FG K       +   K     + +   V    + 
Sbjct: 176 VTGKPEIKTYKKSDFTKITFKPDLVRFGMKNLDDDIVSLFKKRVYDLSGIVKNVNVYLNE 235

Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307
            K   + +              K Y++  L   +++  E                E A  
Sbjct: 236 QKIEIKNF--------------KDYVKLYLPEDAVVVHE----------IINERWELAFT 271

Query: 308 WCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAV 367
             EE  +  S+ N+I T +GG+H + +   LT  I +     + K+  ++    +  S  
Sbjct: 272 TSEEQFQQVSFVNSISTSKGGSHVNHVVEQLTDPIIE---ALKKKKISNVKPFQVKSSMF 328

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
             ++  I  P F  QTK  L         +      F   +++N    TK+ ++V    +
Sbjct: 329 LFINSLIDNPAFDSQTKENLTLRVGAFGSKCEPLKDFIDKVIKNTEVVTKIADFV----K 384

Query: 428 ERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
            +     ++   +K     +             ++   L++ EGDSA       R+    
Sbjct: 385 AKEDAALKKTDGKKKGRIIIDKLEDAKWAGTAKSNECTLYLTEGDSAKTMVMSGRSIVGT 444

Query: 488 ---AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTD 543
               V PLRGK+LNV  A +++I  N +I+ + + LG +  ++      LRY  V+I+TD
Sbjct: 445 ERLGVYPLRGKLLNVREATNKQISENVEIIAIKKILGLQHAKTYTDTSSLRYGHVMIITD 504

Query: 544 ADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQGT-KSVYAHDEEHKQKIL 601
            D DG+HI  LL+ FF      L++    L     P+ R      + V         +  
Sbjct: 505 QDHDGSHIKGLLINFFDYWYPSLLKIPGFLQEFITPIVRGKNSRGEIVNFFTIPEYLEFK 564

Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
           E+             +KGLG   A    E   +          +       +  + + +K
Sbjct: 565 EQ-----NPNYTFKYYKGLGTSTAKDAVEYFKNLPLHVKNFCPMTD--EDKESIELAFSK 617

Query: 662 LMGTKADERFKFI--QERASFIDD 683
               K D R  ++   E+ +F+D 
Sbjct: 618 ---KKVDSRKTWLLGLEQGTFLDQ 638


>gi|301110016|ref|XP_002904088.1| DNA topoisomerase 2 [Phytophthora infestans T30-4]
 gi|262096214|gb|EEY54266.1| DNA topoisomerase 2 [Phytophthora infestans T30-4]
          Length = 1505

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 135/724 (18%), Positives = 244/724 (33%), Gaps = 91/724 (12%)

Query: 2   TDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMR 61
           +D S D          GS ++   +    +      QS    Y          LE + +R
Sbjct: 60  SDASDDASEGSAYDVDGSGDEATPAANAEEGKGTPKQSIEQIYQKK-----TQLEHILLR 114

Query: 62  PGMYIGGTD-----------------------EKALHHLFSEVIDNAMDEVIAGY-ANLI 97
           P  Y+G  +                          L+ +F E+I NA D        N +
Sbjct: 115 PDTYVGSIEHVEQSMWVFDDEKQRMVLKKINYVPGLYKIFDEIIVNACDNKQRDKSMNTL 174

Query: 98  EVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           +V++D     ++V +NG+GIP+  H +       E+I   L  G  FD+   + +GG +G
Sbjct: 175 KVTIDVEKNEISVWNNGKGIPIVLHKEH-KVYVPELIFGHLLTGSNFDDKKKKTTGGRNG 233

Query: 157 VGISVVNALSDELHVTVARQNTIFSQK--FSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
            G  + N  S+E  V  A  +T    K  F   +         K   K  T I+F+PD +
Sbjct: 234 YGAKLANIFSNEFVVETADSSTKQKYKQVFESNMSKKNPPSITKWAQKDFTCISFKPDLE 293

Query: 215 IFGDKA--GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG--LK 270
            F          +   K     A +SG+    +    +I  K        +  P G    
Sbjct: 294 RFKLDFLNDDIVSLFKKRVYDVAGVSGKGMNVFLNGDKIPIKSFPQYVALYPGPRGYEAD 353

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330
                +  +      +     +E K           +   +N  I    +       G  
Sbjct: 354 KDKDDEDAHPDENGDDDDEDYSEDKAKKAKAARAKPSNVTKNGVIFEKPDERWQVGVGMS 413

Query: 331 ESGLRVALTRGI-----KKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           E G +  ++  +     K  + L +  +  ++  + +       +S  I  P F  QTK 
Sbjct: 414 EDGFQQHVSYIVDQITAKLVSVLKKKNKGEAVKPNYIKNHMFVYVSALIDNPAFDSQTKE 473

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIR 445
            L +          L D F   L ++ +        ++  +  +     +R+        
Sbjct: 474 TLTTRANSFGSTFNLSDKFLKQLEKSGLVEK-----ILSFAAFKQTAELRRKGGSSGKRS 528

Query: 446 KLRLPGKLADCSQN---IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           +L    KL D +      +    L + EGDSA                            
Sbjct: 529 RLTGIPKLDDANHAGTAKSKDCTLILTEGDSA---------------------------- 560

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
             + I  N++I ++V+ LG +   +Y     LRY  ++IM D D DG+HI  L++   + 
Sbjct: 561 --KTILKNEEIQNVVKILGLKYGQKYESTKGLRYGHLMIMADQDHDGSHIKGLVINLIHH 618

Query: 562 EMYD-LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
                L+    L     P+ + T+G      +     +   E    +      I  +KGL
Sbjct: 619 FWPSLLVVDGFLQEFITPIVKCTKGRTKEVFYTMPEYEAWRER--TNQGRGWVIKYYKGL 676

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ--ERA 678
           G   A++ KE   D     +                 + +K    + ++R  +++  E  
Sbjct: 677 GTSTAAETKEYFSDLQTHQIGF--TYDGDGDADVIDMAFSK---KRVEDRKDWLRGYEPG 731

Query: 679 SFID 682
           +++D
Sbjct: 732 TYVD 735


>gi|19909653|dbj|BAB87022.1| DNA gyrase subunit B [Vibrio diazotrophicus]
          Length = 467

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 175/476 (36%), Positives = 272/476 (57%), Gaps = 16/476 (3%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
           D   LHH+  EV+DN++DE +AG+   I V++  +  ++V D+GRGIP E H +  N S 
Sbjct: 3   DGTGLHHMVFEVVDNSIDEALAGHCKDIIVTIHEDNSVSVSDDGRGIPTELHEE-ENVSA 61

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G+P
Sbjct: 62  AEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVLLTIYRGGHIHTQTYRHGVP 121

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            +PL          GT + F P    F +   F    L K  +  ++L+  V      ++
Sbjct: 122 QAPLSVVGDTEK-TGTTVRFWPSADTFTN-IEFHYDILAKRLRELSFLNSGVSIKLIDER 179

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
           E        +++ F + GG++ ++     N++ I  ++F   +E++     +VE A+ W 
Sbjct: 180 E------EDKQDHFMYEGGIQAFVTHLNRNKTPIHEKVFHFNSERED--GISVEVAMQWN 231

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISA 366
           +     I  + N I   +GGTH +G R ALTR +  Y +      K       DD     
Sbjct: 232 DGFQEGIYCFTNNIPQRDGGTHLAGFRAALTRTLNTYMDKEGYSKKAKQRTSGDDAREGL 291

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-R 425
             ++SV + +P+F+ QTK KLVS + +  VE+A+ +  + +L ++P EA  +   +I+  
Sbjct: 292 TAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLNEFLAEHPSEAKMVCSKIIDAA 351

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
                 R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR 
Sbjct: 352 RAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRK 411

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
           NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 412 NQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIII 467


>gi|19909659|dbj|BAB87025.1| DNA gyrase subunit B [Listonella pelagia]
          Length = 464

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 180/474 (37%), Positives = 272/474 (57%), Gaps = 16/474 (3%)

Query: 72  KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLE 131
             LHH+  EV+DN++DE +AG+ N I V++  +  ++V D+GRGIP E HP+    S  E
Sbjct: 2   TGLHHMVFEVVDNSIDEALAGHCNDIIVTIHDDNSVSVRDDGRGIPTEMHPE-EQVSAAE 60

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           +I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +  G P +
Sbjct: 61  VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGQIHTQTYHHGEPQA 120

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
           PL    +  +K GT I F P  + F +   F    L K  +  ++L+  V      ++E 
Sbjct: 121 PLAVIGET-DKTGTEIRFWPSEETFSN-TEFHYDILAKRLRELSFLNSGVSIKLRDERE- 177

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
                  + + F F GG++ +++    N++ I  +IF    E+      TVE+A+ W + 
Sbjct: 178 -----EDKGDHFMFEGGIQAFVEHLNTNKTPIIQKIFHFDNERDD--GITVEFAMQWNDG 230

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVG 368
               I  + N I   +GGTH +G R ALTR +  + +      K   +   DD       
Sbjct: 231 YQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTA 290

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSE 427
           ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++NP EA  +   +I     
Sbjct: 291 VISVKVPDPKFSSQTKDKLVSSEVKSAVEQAMGEKLSEFLIENPAEAKTVCTKIIDAARA 350

Query: 428 ERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
               R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQ
Sbjct: 351 RDAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQ 410

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
           A+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 411 AILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIII 464


>gi|309357377|emb|CAP35657.2| hypothetical protein CBG_18156 [Caenorhabditis briggsae AF16]
          Length = 1207

 Score =  342 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 137/701 (19%), Positives = 251/701 (35%), Gaps = 72/701 (10%)

Query: 14  PQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD--- 70
             S  +S++L +           +  A+  Y+  S       E V +RP  YIGG     
Sbjct: 16  SSSTVASKRLTRHFCSQTLSTSLSSEAAAKYEKKSPT-----EHVLLRPDTYIGGVAMRE 70

Query: 71  ---------------------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGNGF-L 107
                                   L  +F E++ NA D        N +EV LD     +
Sbjct: 71  SQFVWIRNSETRRMFTKEVSYPPGLLKIFDEILVNAADNKSRDPSMNRLEVWLDRETSRI 130

Query: 108 TVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSD 167
            V +NG  +PVE HP         ++  +L     +D++     GG +G G  + N  SD
Sbjct: 131 AVWNNGSALPVEIHP-TEGVYVPTLVFGSLFTSSNYDDNEIRTVGGRNGYGAKLCNIFSD 189

Query: 168 EL--HVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK---RGTRITFRPDPKIFGDKA-- 220
           E       +R    F Q++   +        E + N+     T++ F PD K F      
Sbjct: 190 EFVVEAVDSRTKRKFKQRWYHNMREFDEAVIEDLTNQQLSDYTKVEFVPDLKRFHIDKLS 249

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
                 + K     A         +   ++            F                 
Sbjct: 250 EDIIDLIGKRVFEVAATLPSDVQVFFNGQKCDVDGFEDYVRMFNDSNPSSFLFLHPTSRW 309

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
            +  ++  T   E   T    V              S+ N I T++GG+H   +   +  
Sbjct: 310 HVGVAKRNTFSGEGIVTLPKVV--------------SFVNNINTEKGGSHVDYVMDKIVN 355

Query: 341 GIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
            +K   +      + S+    +  +    ++  I  P F  QTK  + +   Q       
Sbjct: 356 VMKPLVDSRLGDPSKSVKPATIKNNISLFINCLIENPSFESQTKETVTTKPKQFGSSFDC 415

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
                    +      ++++ V+   +++      +  N  +    ++L           
Sbjct: 416 DSEKISKWAETSGLLDEIVDEVLNTKKKK---ISSKRANSSSVRDIVKLEDAEWAGVPGK 472

Query: 461 AHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           +    L + EGDSA   A        R    V PL+GK++NV++    +   N++I  +V
Sbjct: 473 SEKCTLILTEGDSAKALALAGLEILGRQTYGVFPLKGKLVNVSNLDDIRASKNEEIGKIV 532

Query: 518 QALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK-HLFLI 575
           + LG         ++ +RY +++I+TD D DG+HI  L++ F ++    LI+    +   
Sbjct: 533 RILGLNFNEPTPSKESIRYGRLLILTDQDEDGSHIKGLVINFIHKFWPSLIQSGEFIKSF 592

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
             PL +  +G + V        +K  E  +    GK ++  +KGLG   +++ +E   + 
Sbjct: 593 RTPLLKAKKGNEVVPFFSLNEYRKWAETIE----GKWKVKYYKGLGTSTSNEAREYFRNL 648

Query: 636 NKRTLLRVEINKDLNSLKDTQDS-INKLMGTKADERFKFIQ 675
           +  T   V  N   +S  D      ++    K+DER ++I+
Sbjct: 649 DHHT---VNFNYAGSSDDDAIRMAFDR---EKSDERKRWIR 683


>gi|630594|pir||S44861 DNA topoisomerase II - Caenorhabditis elegans
          Length = 2434

 Score =  342 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 136/670 (20%), Positives = 242/670 (36%), Gaps = 69/670 (10%)

Query: 56   EPVRMRPGMYIGG------------------------TDEKALHHLFSEVIDNAMDEVIA 91
            E V +RP  YIGG                        T    L  +F E++ NA D    
Sbjct: 1306 EHVLLRPDTYIGGVAMREDQIIWLRDSENRKMIAKEVTYPPGLLKIFDEILVNAADNKAR 1365

Query: 92   GY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
                N +EV LD     ++V +NG G+PVE HP         ++   L     +D+S  +
Sbjct: 1366 DSSMNRLEVWLDRETARISVWNNGSGLPVEIHP-TEGIYVPTLVFGNLFTSSNYDDSEIK 1424

Query: 150  ISGGLHGVGISVVNALSDELHVTVA--RQNTIFSQKFSRGIPLSPLEKKEKVRNKR---G 204
              GG +G G  + N  S E  V     R    F QK+   +      +  ++ ++     
Sbjct: 1425 TVGGRNGYGAKLCNIFSKEFIVETVDTRIKRRFRQKWYDNMKKCNEAEVVEILDETVKDY 1484

Query: 205  TRITFRPDPKIFGDKA--GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            T++ F PD + F            + +     A    R    +   ++          + 
Sbjct: 1485 TKVEFVPDLERFQIDKLSDDVIDLIGRRVFEVAATLPRDVDVYLNGQKCDVDGFEDYVKM 1544

Query: 263  FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
            F     L              +     G  ++      +           P+I S+ N I
Sbjct: 1545 FNDSSSLL---------FLHPTPRWHVGVAKRNNFFGESHVVL-------PKIVSFVNNI 1588

Query: 323  LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
             T++GG+H   +   +   IK   +        S+    +  +    ++  I  P F  Q
Sbjct: 1589 NTEKGGSHVDYVMDKIVNIIKPIVDSKLGDPTKSVKPAVIKNNLSIFINCLIENPSFESQ 1648

Query: 383  TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
            TK  L +                    +       ++E V+   +++L     + V+  +
Sbjct: 1649 TKETLTTKAKNFGSIFECDAKKTAEWAEQSGLIEDIVEEVLNMKKKKLP---GKRVSVSS 1705

Query: 443  AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNV 499
                ++L           A    L + EGDSA   A        R    V PL+GK+LNV
Sbjct: 1706 VRDIVKLEDAEWAGITGTAEKCTLILTEGDSAKALALAGLEVLGRETYGVFPLKGKLLNV 1765

Query: 500  ASAGSEKIRNNQQIMDLVQALGCRTRSQY--REEDLRYEKVIIMTDADVDGAHIASLLLT 557
            ++    +   N++I +L++ LG +         E LRY +++I+ D D DG+HI  L++ 
Sbjct: 1766 SNLDDARASKNEEISNLLRILGLKFEDSNSITRESLRYGRLLILADQDEDGSHIKGLIVN 1825

Query: 558  FFYQEMYDLIE-QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616
            F ++    L+     +     PL +  +G K          +K  +       GK +I  
Sbjct: 1826 FIHKFWPSLVHTDGFIQSFRTPLLKAKKGDKVRSFFSMNEYRKWAD---VEEGGKWKIKY 1882

Query: 617  FKGLGEMLASQLKETAMDANKRTLLRVEINK-DLNSLKDTQDSINKLMGTKADERFKFIQ 675
            +KGLG   +++ +E   D +  T   V             + + ++    K+DER ++I+
Sbjct: 1883 YKGLGTSTSNEAREYFSDLDHHT---VNFKYTGTTDDDAIRMAFDR---DKSDERKEWIR 1936

Query: 676  ERASFIDDVG 685
               + I +  
Sbjct: 1937 RSENEITNED 1946


>gi|268574422|ref|XP_002642188.1| Hypothetical protein CBG18156 [Caenorhabditis briggsae]
          Length = 1206

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 137/701 (19%), Positives = 251/701 (35%), Gaps = 72/701 (10%)

Query: 14  PQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD--- 70
             S  +S++L +           +  A+  Y+  S       E V +RP  YIGG     
Sbjct: 16  SSSTVASKRLTRHFCSQTLSTSLSSEAAAKYEKKSPT-----EHVLLRPDTYIGGVAMRE 70

Query: 71  ---------------------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGNGF-L 107
                                   L  +F E++ NA D        N +EV LD     +
Sbjct: 71  SQFVWIRNSETRRMFTKEVSYPPGLLKIFDEILVNAADNKSRDPSMNRLEVWLDRETSRI 130

Query: 108 TVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSD 167
            V +NG  +PVE HP         ++  +L     +D++     GG +G G  + N  SD
Sbjct: 131 AVWNNGSALPVEIHP-TEGVYVPTLVFGSLFTSSNYDDNEIRTVGGRNGYGAKLCNIFSD 189

Query: 168 EL--HVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK---RGTRITFRPDPKIFGDKA-- 220
           E       +R    F Q++   +        E + N+     T++ F PD K F      
Sbjct: 190 EFVVEAVDSRTKRKFKQRWYHNMREFDEAVIEDLTNQQLSDYTKVEFVPDLKRFHIDKLS 249

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
                 + K     A         +   ++            F                 
Sbjct: 250 EDIIDLIGKRVFEVAATLPSDVQVFFNGQKCDVDGFEDYVRMFNDSNPSSFLFLHPTSRW 309

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
            +  ++  T   E   T    V              S+ N I T++GG+H   +   +  
Sbjct: 310 HVGVAKRNTFSGEGIVTLPKVV--------------SFVNNINTEKGGSHVDYVMDKIVN 355

Query: 341 GIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
            +K   +      + S+    +  +    ++  I  P F  QTK  + +   Q       
Sbjct: 356 VMKPLVDSRLGDPSKSVKPATIKNNISLFINCLIENPSFESQTKETVTTKPKQFGSSFDC 415

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
                    +      ++++ V+   +++      +  N  +    ++L           
Sbjct: 416 DSEKISKWAETSGLLDEIVDEVLNTKKKK---ISSKRANSSSVRDIVKLEDAEWAGVPGK 472

Query: 461 AHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           +    L + EGDSA   A        R    V PL+GK++NV++    +   N++I  +V
Sbjct: 473 SEKCTLILTEGDSAKALALAGLEILGRQTYGVFPLKGKLVNVSNLDDIRASKNEEIGKIV 532

Query: 518 QALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK-HLFLI 575
           + LG         ++ +RY +++I+TD D DG+HI  L++ F ++    LI+    +   
Sbjct: 533 RILGLNFNEPTPSKESIRYGRLLILTDQDEDGSHIKGLVINFIHKFWPSLIQSGEFIKSF 592

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
             PL +  +G + V        +K  E  +    GK ++  +KGLG   +++ +E   + 
Sbjct: 593 RTPLLKAKKGNEVVPFFSLNEYRKWAETIE----GKWKVKYYKGLGTSTSNEAREYFRNL 648

Query: 636 NKRTLLRVEINKDLNSLKDTQDS-INKLMGTKADERFKFIQ 675
           +  T   V  N   +S  D      ++    K+DER ++I+
Sbjct: 649 DHHT---VNFNYAGSSDDDAIRMAFDR---EKSDERKRWIR 683


>gi|6018677|emb|CAB57885.1| DNA gyrase B subunit [Photobacterium damselae subsp. piscicida]
          Length = 682

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 182/476 (38%), Positives = 280/476 (58%), Gaps = 15/476 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I  Q +  G+P +PLE   
Sbjct: 1   HAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIYRHGHIHRQIYRHGVPQAPLEVIG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
              ++ GT I F P  + F +   F    L K  +  ++L+  V    + ++E       
Sbjct: 61  DT-DRTGTTIRFWPSSETFTNTT-FQYEILAKRLRELSFLNSGVSIKLNDERE------E 112

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
            +++ F + GG++ +++    N++ I  ++F    E++     TVE A+ W +     I 
Sbjct: 113 GKQDHFMYEGGIQAFVEHLNRNKTPIHQKVFHFNVERED--GITVEVAMQWNDGFQENIY 170

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
            + N I   +GGTH +G R ALTR +  Y E      K   +   DD       ++SV +
Sbjct: 171 CFTNNIPQRDGGTHLAGFRGALTRTLNNYMEKEGYSKKAKAATSGDDAREGLTAVISVKV 230

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            +P+F+ QTK KLVS + +  VE+ + +    +L++NP +A  +   +I+ S  R   RK
Sbjct: 231 PDPKFSSQTKDKLVSSEVKSAVESTMGEKLGEFLLENPGDAKTVCTKIIDASRAREAARK 290

Query: 435 QR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            R    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+
Sbjct: 291 AREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLK 350

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIA 552
           GKILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDADVDG+HI 
Sbjct: 351 GKILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIR 410

Query: 553 SLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +LLLTFFY++M +LIE+ H+++  PPL+++ +G +  Y  D+E  Q+         
Sbjct: 411 TLLLTFFYRQMPELIERGHIYIAQPPLYKVKKGKQEQYIKDDEDMQQFQTSLALEN 466



 Score = 98.7 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 4/66 (6%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            +++LE   K  +  + + R+KGLGEM   QL ET MD   R ++RV IN  +       
Sbjct: 621 FKEVLEWLNKESRRGLSLQRYKGLGEMNPDQLWETTMDPESRRMMRVTINDAV----AAD 676

Query: 657 DSINKL 662
           +    L
Sbjct: 677 ELFTTL 682


>gi|290995679|ref|XP_002680410.1| DNA topoisomerase II [Naegleria gruberi]
 gi|284094031|gb|EFC47666.1| DNA topoisomerase II [Naegleria gruberi]
          Length = 1135

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 131/688 (19%), Positives = 262/688 (38%), Gaps = 74/688 (10%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD----------------------EKAL 74
            +S    Y          +E V  RP  Y+G T+                        AL
Sbjct: 7   AKSIEQQYQKK-----TPIEHVLERPDTYVGSTERMKKKLFCLDSVNNIKLKEVDFIPAL 61

Query: 75  HHLFSEVIDNAMDEVIAG--YANLIEVSLDG-NGFLTVVDNGRGIPVENHPKFPNKSTLE 131
           + +  E++ NA+D       + N + V++D    ++ + +NG+ +PVE H K       E
Sbjct: 62  YRIIDEILVNAVDNHHRKGTHTNELRVTIDEAKNWIHIRNNGKSVPVEMH-KIEKIYVPE 120

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFS-QKFSRGIPL 190
           ++   L  G  FD++  + +GG +G G  + N  S +  + +         Q + + +  
Sbjct: 121 LVFGNLLTGSNFDDNEVKFTGGRNGYGAKLANIFSTDFTIEIMDHKGTHYIQNWKKNMSQ 180

Query: 191 SPLEKKEKVRNKR--GTRITFRPDPKIFG----DKAGFDAARLLKMTQSKAYLSGRVKTC 244
                  + + K     +++F PD K F     +K       L +     +  + ++   
Sbjct: 181 ISTPTIVENKQKTEPYIQVSFHPDFKKFQSTGLNKELNMIDLLKRRIYDLSACNPKLNVY 240

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
            +  K   + +    K  +               N S    E               +  
Sbjct: 241 LNDKKVEVDNFKEYVKLFYQ-------------NNSSGEHPEKMFVHKHICDGWEIAI-- 285

Query: 305 AIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMI 364
             A   E     S+ N+I T +GG+H + +   L+  I +Y   T     ++I    +  
Sbjct: 286 -GASVGEEFNQISFVNSIATVQGGSHVNFVLNQLSTKISEYIAKTYTDLQLTISPYMVRN 344

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
                ++  I  P F  QTK  L +       +  + +   + +  +      +++ +I 
Sbjct: 345 HITLFINSLIENPTFDSQTKETLTTKSISFAQKVVISNDLINSIANHTP----IIDNIIA 400

Query: 425 RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN- 483
            +  +      ++  ++ +   +           N +    L + EGDSA   A    + 
Sbjct: 401 FANYKQSSASSKKFKKRESKLLIPKLDDANLAGTNRSMECVLILTEGDSAKALAISGLSV 460

Query: 484 --RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR-----EEDLRYE 536
             R    V PL+GK+LNV  A +++IR+NQ+I +L + LG    S+        + LRY 
Sbjct: 461 VGRDRFGVFPLKGKLLNVREASADQIRDNQEIQNLKKILGLDDVSKTDSFEELTKRLRYG 520

Query: 537 KVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEH 596
           KV++M D D DG+HI  LLL   +    +L+    +     P+ ++++G+          
Sbjct: 521 KVMLMCDQDHDGSHIKGLLLNMIHFFYPELLRNNFVDEFITPIIKVSKGSDVKSFFSIPE 580

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            Q    +  ++ K +     +KGLG   + + K+   +  +     + +  D +S  + +
Sbjct: 581 FQNWWTKVPENEKNRWNQKYYKGLGTNSSKEAKDYFSNLKRHV---IALQYDDDSEPNIE 637

Query: 657 DSINKLMGTKADERFKFIQ--ERASFID 682
            + +K     A+ R  ++   +  +F+D
Sbjct: 638 LAFSK---DLANARKSWVASLKDGTFLD 662


>gi|18147181|dbj|BAB83071.1| DNA gyrase subunit B [Alcanivorax sp. ST-1]
 gi|324039414|dbj|BAJ78460.1| DNA gyrase subunit B [Alcanivorax sp. ST1]
          Length = 466

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 184/477 (38%), Positives = 273/477 (57%), Gaps = 19/477 (3%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
           D   LHH+  EV+DN++DE +AG+ + I+V +  +  +++ DNGRGIP E H +    S 
Sbjct: 3   DGTGLHHMVFEVVDNSIDEALAGFCSEIKVVIHPDESMSIQDNGRGIPTEMHEE-EGVSA 61

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            E+I+T LHAGGKFD++TY++SGGLHGVG+SVVNALS+EL +T+ R   +  Q ++ G+P
Sbjct: 62  AEVIMTVLHAGGKFDDNTYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYNHGVP 121

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
             PLE      +  GT + FRP P+ F +   F    L K  +  ++L+  V+     ++
Sbjct: 122 AKPLEVVG-TTDSSGTAVHFRPSPETFSN-IKFHYDILAKRLRELSFLNSGVRIHLMDER 179

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAW 308
              E       + F + GGL  ++     N++ ++       + E+ G     VE A+ W
Sbjct: 180 SGDE-------DVFEYEGGLSAFVSYLNTNKTPLNQVFHFNYEREEDGI---AVEVAMQW 229

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
            +     I  + N I   +GGTH +G R ALTR +  Y +      K   S   DD    
Sbjct: 230 NDSYQENIFCFTNNIPQRDGGTHLAGFRAALTRTLNSYMDKEGFLKKEKASPSGDDAREG 289

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-E 424
              ++SV + +P+F+ QTK KLVS + +  VE  + D F  YL++NP EA  +++ +I  
Sbjct: 290 LTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGDLFQDYLLENPGEARSIVQKIIDA 349

Query: 425 RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
                  R+ +    RK A+    LPGKLADC Q     +EL+IVEGDSAGGSAKQ R+R
Sbjct: 350 ARARDAARKAREMTRRKGALDIAGLPGKLADCQQKDPALSELYIVEGDSAGGSAKQGRDR 409

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  E LRY ++II
Sbjct: 410 KNQAILPLKGKILNVEKARFDKMLSSQEVGTLITALGCGIGRDEYNIEKLRYHRIII 466


>gi|13517007|dbj|BAB40386.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04446]
 gi|13517023|dbj|BAB40394.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04456]
          Length = 474

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 188/483 (38%), Positives = 278/483 (57%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALSD L  TV R   I+ Q++ RG  L P++      +K 
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDHLKATVHRDGKIWEQEYERGKSLYPVKAVGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF PD  IF     +    L    +  AYL+  +    +  +E  E+ G  + E F
Sbjct: 60  GTVVTFLPDRSIFQQTTTYSYDTLANRLRELAYLNKGITIILTDKRE-TEEDGSFKGETF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           +   GLK +++   + R  I  ++ + + EK G     VE A+ + +     + SY N I
Sbjct: 119 HSQEGLKEFIRFLDDTRHPIIEDVISMEGEKNGIP---VEVAMIYNDSYAENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLSGFRRGLTGTLKKYADNSGMLDKLKFDITGDDFREGLTAIVSVKVAEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + +    V  A+    + YL ++P +A  +++ VI  ++ R   RK RE+  
Sbjct: 236 GQTKTKLGNREVTSAVSQAVSQMLEDYLEEHPNDAKVIVQKVILAAQARHAARKAREMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV
Sbjct: 296 RKTVMSGGGLPGKLSDCSETDPTLCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASL 554
             A S K+  N++I ++  ALG    ++        E LRY K++IM DADVDG+HI++L
Sbjct: 356 EKAMSHKVFENEEIRNIFTALGVTIGTEEDSKALNLEKLRYHKIVIMCDADVDGSHISTL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +LIE  ++++ +PPL+ + +G K  YA +++ + +I E F     G   I
Sbjct: 416 ILTFFFRYMKELIENGYVYIATPPLYLVKKGAKKRYAWNDKERDEIAESFG----GGANI 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|307704603|ref|ZP_07641506.1| DNA gyrase subunit B [Streptococcus mitis SK597]
 gi|307621848|gb|EFO00882.1| DNA gyrase subunit B [Streptococcus mitis SK597]
          Length = 430

 Score =  341 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 154/431 (35%), Positives = 234/431 (54%), Gaps = 15/431 (3%)

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-T 316
            + + +++ GG+ +Y++   EN+ +I         E       TVE A+ +     E   
Sbjct: 2   EQTKHYHYEGGIASYVEYINENKDVIFDIPIYTDGEMDDI---TVEVAMQYTTGYHENVM 58

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFI 374
           S+ N I T EGGTHE G R ALTR I  YA   +  +    ++  +D+      ++SV  
Sbjct: 59  SFANNIHTHEGGTHEQGFRTALTRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKH 118

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRR 433
             P+F GQTKTKL + +  +       D F  +L++NP  A +++E  ++        +R
Sbjct: 119 PNPQFEGQTKTKLGNSEVVKITNRLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKR 178

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            +    +K+ +    LPGKLADCS N    TELFIVEGDSAGGSAK  RNR  QA+LP+R
Sbjct: 179 AREVTRKKSGLEISNLPGKLADCSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIR 238

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIAS 553
           GKILNV  A  +KI  N++I  L  A+G    +++     RY+K+++MTDADVDGAHI +
Sbjct: 239 GKILNVEKASMDKILANEEIRSLFTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRT 298

Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEF---KKHGK 609
           LLLT  Y+ M  ++E  ++++  PP++ +  G++   Y      ++  L+E       G+
Sbjct: 299 LLLTLIYRYMKPILEAGYVYIAQPPIYGVKVGSEIKEYIQPGADQEIKLQEALTRHSEGR 358

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669
            K  I R+KGLGEM   QL ET MD   R + RV ++       +     + LMG + + 
Sbjct: 359 AKPTIQRYKGLGEMDDHQLWETTMDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEP 414

Query: 670 RFKFIQERASF 680
           R +FI+E A +
Sbjct: 415 RREFIEENAVY 425


>gi|253682980|ref|ZP_04863766.1| DNA topoisomerase [Clostridium phage D-1873]
 gi|253560809|gb|EES90272.1| DNA topoisomerase [Clostridium phage D-1873]
          Length = 678

 Score =  340 bits (872), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 150/689 (21%), Positives = 288/689 (41%), Gaps = 62/689 (8%)

Query: 47  SSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGF 106
           + ++ L+G E VR R  + +G  D +   H   E++ N++D    G+ + I+V    +  
Sbjct: 2   ADLKRLKGSERVRKRVSVMMGSDDIRGCQHTLFEIVSNSIDRHRKGFGDYIKVIKHEDLS 61

Query: 107 LTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALS 166
            T++D+  G+P++ + K  +    ++ L  L+AG  +D ++   + GL+G+G+      S
Sbjct: 62  YTIIDHADGLPMDWNEK-EHAYNWDLALKVLYAGDNYDANS--TALGLNGLGLCSSQYAS 118

Query: 167 DELHVTVARQNTIFSQKFSRGIPLSPLE----------------------KKEKVRNKRG 204
           + + V   +++  ++ K  +G P+                           +    NK G
Sbjct: 119 EFMEVISYKEDKKYTVKCKKGRPIDKETGEFICEDDDNLFTKEQGNRVLLVESNTENKTG 178

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I ++PD ++F +        +      ++ ++  +K     +KE             +
Sbjct: 179 TYIHYKPDLEVFTNI-DISIDWINDKLDKQSMVNKGLKIEIYDEKE-------DRLYTHF 230

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTE-----KKGTHRGTVEWAIAWCEENPEITSYC 319
           +  G+K Y++T   + +      FT K +      K  +    E A+ +  E   +  Y 
Sbjct: 231 YESGIKDYIKTISNDNNFSDVIYFTDKGKGRDKADKPEYDYNYEIALVFNNEINRLEYYH 290

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N+    +GG+    + +A T  I +YA+     NK    I   D+  S + ++S F    
Sbjct: 291 NSSELLQGGSTSDAISLAFTYAINEYAKNNNVFNKNESKIKFTDIQDSLICVISSFSTMT 350

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
            +A QTK  + +   +     +L++    Y ++N +EA +++  ++       +  K + 
Sbjct: 351 SYANQTKLSIDNKFIKDFTNQSLKEKLKLYFIENKLEADRIVNQILINKRANDKAEKSKI 410

Query: 438 V-----NRKTAIRKLRLPGKLADCSQNIAHGTE--LFIVEGDSAGGSAKQARNRSNQAVL 490
                  +            L DC    +   E  L + EG S   +  ++ +      +
Sbjct: 411 EIRNKLQQSNKKGLSLKIEGLKDCDMRNSQLEERILLVDEGVSPNSTIIKSFDGRIMGAM 470

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED------------LRYEKV 538
            LRG+ +N   +    +  N     L+ ALGC     Y E              LRY  V
Sbjct: 471 GLRGRFINSLKSSVTDVLKNVPAHTLITALGCGIEIPYEERKIFKDIQTFNLDNLRYGSV 530

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQ 598
            I+ DAD  G  I   L+TFFY+ +  L++Q  +FL+  P F IT    + YA+DE  K 
Sbjct: 531 GILCDADAFGKGINLALITFFYKFIPTLLKQGRVFLVKSPRFCITTKKDTFYAYDENEKN 590

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            I+++ +  G  K +I   KGLGE    +     +    R    ++++ +       +  
Sbjct: 591 TIIQDLQSKGI-KYDIGIKKGLGEFNTDEFWTYVLSPEAREKTFIQLDYNTVEEDIIKYY 649

Query: 659 INKLMGTKADERFKFIQERASFID--DVG 685
            + LMG   DER K+I+E  + +D  ++ 
Sbjct: 650 FDALMGENIDERKKYIREHITNVDLNELD 678


>gi|80159785|ref|YP_398529.1| putative DNA gyrase B subunit [Clostridium phage c-st]
 gi|78675375|dbj|BAE47797.1| putative DNA gyrase B subunit [Clostridium phage c-st]
          Length = 678

 Score =  340 bits (872), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 151/689 (21%), Positives = 288/689 (41%), Gaps = 62/689 (8%)

Query: 47  SSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGF 106
           + ++ L+G E VR R  + +G  D +   H   E++ N++D    G+ N I+V    +  
Sbjct: 2   ADLKRLKGSERVRKRVSVMMGSDDIRGCQHTLFEIVSNSIDRHRKGFGNYIKVIKHEDLS 61

Query: 107 LTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALS 166
            T++D+  G+P++ + K  +    ++ L  L+AG  +D ++   + GL+G+G+      S
Sbjct: 62  YTIIDHADGLPMDWNEK-EHAYNWDLALKVLYAGDNYDANS--TALGLNGLGLCSSQYAS 118

Query: 167 DELHVTVARQNTIFSQKFSRGIPLSPLE----------------------KKEKVRNKRG 204
           + + V   +++  ++ K  +G P+                           +    NK G
Sbjct: 119 EFMEVISYKEDKKYTVKCKKGRPIDKETGEFICEDDDNLFTKEQGNRVLLVESNTENKTG 178

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I ++PD ++F +        +      ++ ++  +K     +KE             +
Sbjct: 179 TYIHYKPDLEVFTNI-DISIDWINDKLDKQSMVNKGLKIEIYDEKE-------DRLYTHF 230

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTE-----KKGTHRGTVEWAIAWCEENPEITSYC 319
           +  G+K Y++T   + +      FT K +      K  +    E A+ +  E   +  Y 
Sbjct: 231 YESGIKDYIKTISNDNNFSDVIYFTDKGKGRDKADKPEYDYNYEIALVFNNEINRLEYYH 290

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N+    +GG+    + +A T  I +YA+     NK    I   D+  S + ++S F    
Sbjct: 291 NSSELLQGGSTSDAISLAFTYAINEYAKNNNVFNKNESKIKFTDIQDSLICVISSFSTMT 350

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
            +A QTK  + +   +     +L++    Y ++N +EA +++  ++       +  K + 
Sbjct: 351 SYANQTKLSIDNKFIKDFTNQSLKEKLKLYFIENKLEADRIVNQILINKRANDKAEKSKI 410

Query: 438 V-----NRKTAIRKLRLPGKLADCSQNIAHGTE--LFIVEGDSAGGSAKQARNRSNQAVL 490
                  +            L DC    +   E  L + EG S   +  ++ +      +
Sbjct: 411 EIRNKLQQSNKKGLSLKIEGLKDCDMRNSQLEERILLVDEGVSPNSTIIKSFDGRIMGAM 470

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED------------LRYEKV 538
            LRG+ +N   +    +  N     L+ ALGC     Y E              LRY  V
Sbjct: 471 GLRGRFINSLKSSVTDVLKNVPAHTLITALGCGIEIPYEERKIFKDIQTFNLDNLRYGSV 530

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQ 598
            I+ DAD  G  I   L+TFFY+ +  L++Q  +FL+  P F IT    + YA+DE  K 
Sbjct: 531 GILCDADAFGKGINLALITFFYKFIPTLLKQGRVFLVKSPRFCITTKKDTFYAYDENEKN 590

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            I+++ +  G  K +I   KGLGE    +     +    R    ++++ +       +  
Sbjct: 591 TIIQDLQSKGI-KYDIGIKKGLGEFNTDEFWTYVLSPEAREKTFIQLDYNTVEEDIIKYY 649

Query: 659 INKLMGTKADERFKFIQERASFID--DVG 685
            + LMG   DER K+I+E  + +D  ++ 
Sbjct: 650 FDALMGENIDERKKYIREHITNVDLNELD 678


>gi|13517053|dbj|BAB40409.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04478]
          Length = 474

 Score =  340 bits (872), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 189/483 (39%), Positives = 281/483 (58%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALS+ L  TV R+  ++ Q++ RG  L P++      ++R
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSEHLKATVFREGKVWEQEYERGKTLYPVKSTG-TTDQR 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF+PDP IF     ++   L    +  A+L+  +    +  +   E+      E F
Sbjct: 60  GTTVTFKPDPIIFTQVLEYNYDTLASRLRELAFLNKGITITITDRRHKDEEGNE-ISETF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTI 322
           +   GLK +++   + R  I +++ + + EK GT    VE A+ +     E    Y N I
Sbjct: 119 HSTEGLKEFIKYLDDTREPIIADVISMEGEKNGTP---VEVAMIYNTSYSENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLSGFRRGLTTTLKKYADASGMLDKLKFDISGDDFREGLTAIVSVKVSEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + +    V  A+ +  ++YL +NP +A  +++ VI  ++ R   RK RE+  
Sbjct: 236 GQTKTKLGNREVTSAVSQAVSEMLENYLEENPQDAKTIVQKVILAAQARHAARKAREMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV
Sbjct: 296 RKTVMSGGGLPGKLSDCSEQDPEKCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASL 554
             A   K+  N++I ++  ALG    ++        E LRY K++IM DADVDG+HIA+L
Sbjct: 356 EKAMQHKVFENEEIRNIFTALGVTIGTEEDSKALNLEKLRYHKIVIMCDADVDGSHIATL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M DLIE  H+++ +PPL+ + +G K  YA D++ +  I+E F     G   I
Sbjct: 416 ILTFFFRYMRDLIEAGHVYIATPPLYLVKKGAKKSYAWDDKERDGIVESFG----GSATI 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|19909675|dbj|BAB87033.1| DNA gyrase subunit B [Thermotoga sp. KU1]
          Length = 459

 Score =  340 bits (871), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 183/469 (39%), Positives = 268/469 (57%), Gaps = 17/469 (3%)

Query: 79  SEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLH 138
            EV+DN++DE +AGY + I V+L  +G + V DNGRGIPV+ HP+   +S LE++ T LH
Sbjct: 1   YEVVDNSVDEALAGYCDWIRVTLHEDGSVEVEDNGRGIPVDIHPE-EGRSALEVVFTVLH 59

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKF   +Y+ISGGLHGVG+SVVNALS+ L V V R   I+ Q++ RG P++P+E   +
Sbjct: 60  AGGKFSKDSYKISGGLHGVGVSVVNALSEWLEVRVHRDGKIYRQRYERGKPVTPVEVIGE 119

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GT + F+PDP IF +   FD   L    +  A+L   +K  +       +K    
Sbjct: 120 T-DKHGTIVRFKPDPLIFSE-TEFDPDVLEHRLREIAFLVPGLKIEFEDRINGEKKT--- 174

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----KKGTHRGTVEWAIAWCEEN-P 313
               F F GG+  Y++     +  +   I   +TE    K G     VE A  + +    
Sbjct: 175 ----FKFDGGIVEYVKYLNRGKKALHDVIHIKRTEKVKTKNGEDEVIVEIAFQYTDSYSE 230

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSV 372
           +I S+ NTI T +GGTH +  +  LTR + +Y +     K+  S   +D+      ++SV
Sbjct: 231 DIVSFANTIKTVDGGTHVTAFKSTLTRLMNEYGKKHNFLKKDDSFQGEDVREGLTAVISV 290

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
           +++ PEF GQTK+KL + + +  V  A+R+        N      +L  ++   + R   
Sbjct: 291 YVKNPEFEGQTKSKLGNEEVKEAVTKAMREELKKIFDANSDLVKAILSKIMSTKQAREAA 350

Query: 433 RKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           ++ RE+  RK  ++   LPGKLADCS      TELFIVEGDSAGGSAKQAR+R  QAVLP
Sbjct: 351 KRAREMVRRKNVLQNTALPGKLADCSSTHREKTELFIVEGDSAGGSAKQARDREFQAVLP 410

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +RGKILNV  +  +++  N+QI D++ A+G      + E  LRY ++II
Sbjct: 411 IRGKILNVEKSSLDRLLKNEQISDIIVAVGTGIGDDFDESKLRYGRIII 459


>gi|9971325|dbj|BAB12469.1| DNA gyrase B subunit [Capnocytophaga canimorsus]
          Length = 480

 Score =  340 bits (871), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 184/489 (37%), Positives = 274/489 (56%), Gaps = 24/489 (4%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALS  L   V R   I+ Q++ RG  L P+++    +  R
Sbjct: 1   DKGSYKVSGGLHGVGVSCVNALSSHLTAVVYRDGKIWQQEYERGKVLYPVKQVGDTQK-R 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF+PD  IF     +    L    +  A+L+  +    +  +E  E+ G  + E F
Sbjct: 60  GTTVTFQPDDLIFQQTLEYKYDTLATRMRELAFLNRGITITLTDKRER-EENGEFKSETF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTI 322
           Y   GLK +++    NR  I S +   + EK       VE A+ + +   E    Y N I
Sbjct: 119 YSENGLKEFIRYLDGNRPAIISNVIAMEGEKNEIP---VEVAMVYNDSYSENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKY--------AELTQNKRAISIISDDLMISAVGILSVFI 374
            T EGGTH  G R  LTR +KKY              K  + I  +D       I+SV +
Sbjct: 176 NTHEGGTHLEGFRRGLTRTLKKYADSSGLLEKMSKDKKNPVQISGEDFREGLTAIVSVKV 235

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP+F GQTKTKL + +    V  A+ +  + YL ++P +A  ++E VI  ++ R   RK
Sbjct: 236 AEPQFEGQTKTKLGNSEVLAVVSQAVSEMLEAYLEEHPNDAKVIVEKVIIAAQARHAARK 295

Query: 435 QRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            RE V RKT +    LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPL+
Sbjct: 296 ARELVQRKTVMSGGGLPGKLSDCSEQNPELCEIFLVEGDSAGGTAKQGRDRNFQAILPLK 355

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDG 548
           GKILNV  A   K+ ++++I ++  ALG    ++        E LRY KV+IM DADVDG
Sbjct: 356 GKILNVEKAMHHKVFDSEEIKNIFTALGVTIGTEDDAKALNLEKLRYHKVVIMCDADVDG 415

Query: 549 AHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +HI +L+LTFF++ M DLIE+ ++++ +PPL+ + +G K  YA +++ +  + EE+ +  
Sbjct: 416 SHITTLILTFFFRYMRDLIEKGYVYIATPPLYLVKKGNKKAYAWNDKERDALSEEYGQ-- 473

Query: 609 KGKIEISRF 617
                I R+
Sbjct: 474 --GTNIQRY 480


>gi|13517011|dbj|BAB40388.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04450]
 gi|13517019|dbj|BAB40392.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04454]
          Length = 474

 Score =  339 bits (870), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 182/483 (37%), Positives = 274/483 (56%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALS+ L  TV R+  ++ Q++ RG  L P++      +K 
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSEHLKATVYREGKVWEQEYERGKTLYPVKTVGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF+PDP+IF     ++   L    +  AYL+  +       +   E     E E F
Sbjct: 60  GTIVTFKPDPQIFQQTLEYNYDTLASRMRELAYLNRGITVHLVDKRHKKEDG-SYEGETF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           +   GL  +++    NR  +  ++ + + EK G     VE A+ +       + SY N I
Sbjct: 119 HSEEGLSEFVKFLDGNREPLMKDVISFEGEKNGVP---VEVAMVYNTSYAENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLSGFRRGLTHTLKKYADGSGMLDKLKFDISGDDFREGLTAIVSVKVAEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + +   +V  A+ +    YL ++P +A  +++ VI  ++ R   +K RE+  
Sbjct: 236 GQTKTKLGNREVSASVSQAVSEMLTDYLEEHPEDAKTIVQKVILAAQARHAAQKAREMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV
Sbjct: 296 RKTVMSIGGLPGKLSDCSEQDPAQCEVFLVEGDSAGGTAKQGRDRAFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASL 554
             A   K+  N++I ++  ALG    ++          LRY KV+IM DAD+DG+HIA+L
Sbjct: 356 EKAMQHKVFENEEIKNIFTALGVTIGTEEDPRALNLTKLRYHKVVIMCDADIDGSHIATL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +LIE   +++ +PPL+ + +G K  YA  ++ +  I+ +F    K    I
Sbjct: 416 ILTFFFRYMRELIENGFVYIATPPLYLVKKGAKKQYAWSDKDRDAIISDFGDGSK----I 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|84995060|ref|XP_952252.1| DNA topoisomerase II [Theileria annulata strain Ankara]
 gi|65302413|emb|CAI74520.1| DNA topoisomerase II, putative [Theileria annulata]
          Length = 1369

 Score =  339 bits (869), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 140/697 (20%), Positives = 262/697 (37%), Gaps = 92/697 (13%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----------------------E 71
              ++  + Y          LE + +RP  YIG T+                        
Sbjct: 2   GKAKTVEERYQKK-----TQLEHILLRPDTYIGSTELNNQQMWLYDEEKNRMVYETIDYV 56

Query: 72  KALHHLFSEVIDNAMDEVIAG-------YANLIEVSLDG-NGFLTVVDNGRGIPVENHPK 123
             L+ +F E++ NA D                I+V++D   G + V ++G  IP++ H +
Sbjct: 57  PGLYKIFDELLVNAADVYARQLSDPTLEKMTCIKVTIDRGTGAIVVYNDGEPIPIQIHSE 116

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTV--ARQNTIFS 181
                  ++I   L     +D+S   ++GG +G G  + N  S    V V   + +  F 
Sbjct: 117 H-KMYVPQLIFGELLTSDNYDDSEERVTGGRNGFGAKLANIFSKTFTVVVGNKKTHKKFK 175

Query: 182 QKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK--AGFDAARLLKMTQSKAYLS 238
             +   +  +      +        +ITF PD   F  +         L K     A   
Sbjct: 176 MTWCNNMTKTKSPAHIESYTGPDFVKITFIPDYSRFNLEELDEGTYRVLKKRVYDMAGTL 235

Query: 239 GRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH 298
           G  K   + ++   + +              K Y+   L   +    +I+          
Sbjct: 236 GV-KVYLNNERIKVKDF--------------KDYVNLYLPEDATEIVKIY--------EK 272

Query: 299 RGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII 358
               E  I+  E+     S+ N+I T +GGTH S +   L + + K    ++NK  I + 
Sbjct: 273 MYRWEVVISSSEDGFRQVSFVNSINTLKGGTHVSHVVDPLVQSLTK-KVNSKNKGGIELK 331

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            + +       ++  I  P F  QTK  L +   +   +  + D        N +  +K+
Sbjct: 332 PNQIRNHIFVFINCQIVNPSFDSQTKETLTTKIVKFGSKYTMSDKTL-----NQVLKSKI 386

Query: 419 LEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHG---TELFIVEGDSAG 475
            + +I    E+     ++++       KL    KL D ++          L + EGDSA 
Sbjct: 387 FDNIISWLHEKTNIELKKKMKVAKGNDKLFGIPKLEDANKAGTRYATECTLILTEGDSAK 446

Query: 476 GSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
            S     +   R    V PL+GK+LNV  A  +++  N ++ ++++ +G    ++ R++ 
Sbjct: 447 TSCLAGLSVVGRDKYGVFPLKGKLLNVREASYKQLTQNIEVQNILKIMGLDITNKLRQDS 506

Query: 533 --LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE-QKHLFLISPPLFRITQG--TK 587
             LRY  ++IMTD D DG+HI  LL+  F+     LI+    +     P+ ++T     +
Sbjct: 507 SGLRYGSIMIMTDQDYDGSHIKGLLINMFHNFWPKLIQFNGFIKEFITPIIKVTNKSNNQ 566

Query: 588 SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINK 647
                  E      +           +  +KGLG    ++ KE   + N+  +    ++ 
Sbjct: 567 VHSFFTIEDFNNWKQTV---DISNYRVKYYKGLGTSSDNEFKEYFGNLNRHIVEFKYVDT 623

Query: 648 DLNSLKDTQDSINKLMGTKADERFKFIQER--ASFID 682
             +       + +K    + D+R K+IQ     + +D
Sbjct: 624 VDDD--SIDLAFSK---KRIDDRKKWIQNYVLGTTVD 655


>gi|157504497|gb|ABV58898.1| DNA gyrase B subunit [Flammeovirga yaeyamensis]
          Length = 476

 Score =  339 bits (869), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 183/483 (37%), Positives = 278/483 (57%), Gaps = 16/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  TY++SGGLHGVG+S VNALS +L VTV R   IF Q++  GIP   +++  +  +  
Sbjct: 1   DKDTYKVSGGLHGVGVSCVNALSKDLKVTVHRAGKIFQQEYKTGIPQYDVKQIGET-DIT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F PD  IF     ++   +    +  AYL+  +K  +   ++  E+     +E F
Sbjct: 60  GTVVQFWPDLSIFTHGV-YNYDTIATRLRELAYLNAGIKIHFKDLRQKDEEG-EYIQETF 117

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTI 322
           +  GGL  Y+      R+ +  +    + EK       V+ A+ +     E   SY N I
Sbjct: 118 FSEGGLSEYVMYLDSTRTSLLPDPIFMEGEKANIQ---VQVAMTYNTSYSENVFSYVNNI 174

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH +G R +LTR +K YA+ T    K  + I  DD       I+SV + EP+F 
Sbjct: 175 NTYEGGTHVAGFRRSLTRTLKSYADQTGLLDKVKVDISGDDFREGLTSIISVKVPEPQFE 234

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +    V++A+ +    +L ++P EA  +++ VI  ++ R   RK RE+ +
Sbjct: 235 GQTKTKLGNSEVAGAVDSAVTETLKTFLEEHPKEAKNIVQKVITAAQARHAARKAREMVQ 294

Query: 441 KTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +   +    LPGKL+DC++      EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV
Sbjct: 295 RKNVLTGTGLPGKLSDCTEKDPAACELYLVEGDSAGGSAKQGRDRMFQAILPLKGKILNV 354

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASL 554
             A   KI +N++I +++ ALG R  ++  E     E LRY K+IIMTDADVDG+HI +L
Sbjct: 355 EKAQEHKIYDNEEIKNIITALGVRFGTENDEKELNLEKLRYHKIIIMTDADVDGSHIRTL 414

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LT F++ M  LIEQ +L++  PP + + +G +  Y   EE + + ++EF    +GK+ +
Sbjct: 415 ILTLFFRYMKPLIEQGYLYIAQPPFYLVKKGKQEKYCWSEEDRIRAIQEFGGD-EGKVNV 473

Query: 615 SRF 617
            R+
Sbjct: 474 QRY 476


>gi|19909743|dbj|BAB87067.1| DNA gyrase subunit B [bacterium MBIC3367]
          Length = 461

 Score =  339 bits (869), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 191/471 (40%), Positives = 272/471 (57%), Gaps = 15/471 (3%)

Query: 72  KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLE 131
             LHH+  EV+DNA+DE +AG+A+ + V+L+ +G +TV DNGRGIP + HP+    S  E
Sbjct: 1   SGLHHMVYEVVDNAIDEALAGHADHVTVTLNPDGSVTVSDNGRGIPTDLHPE-EGVSAAE 59

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           +I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALS +L + + R +      F+ G  + 
Sbjct: 60  VIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSTKLELRIWRNDQEHFMTFAHGDAVG 119

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
           PLE       K+GT +TF P P+ F     FD A L    +  A+L+   +   +  + +
Sbjct: 120 PLEVVGPANGKKGTEVTFLPSPETFTK-TEFDFATLEHRLRELAFLNSGARIILTDKRGV 178

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
            +       EE ++ GGL+ +++     +  +       + EK G    TVE A+ W + 
Sbjct: 179 ED-----VVEELFYEGGLEAFVRYLDRAKHPLIETPIAVRAEKDGI---TVEAAMWWNDS 230

Query: 312 NPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVG 368
             E    + N I   +GGTH +G R ALTR +  YAE T    K  +S+  DD       
Sbjct: 231 YHEQVLCFTNNIPQRDGGTHLAGFRGALTRQVTGYAEATGLMKKEKVSLSGDDCREGLTC 290

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           +LSV + +P+F+ QTK KLVS + +  VEN +      +L +NP  A  ++  V+E +  
Sbjct: 291 VLSVKVPDPKFSSQTKDKLVSSEVRPVVENLISQTLSEWLEENPAPAKTIVSKVVEAASA 350

Query: 429 RLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
           R   RK RE   RK A+    LPGKLADC +  A   ELF+VEGDSAGGSAKQ R+R NQ
Sbjct: 351 REAARKARELTRRKGALDVASLPGKLADCQERDASKAELFLVEGDSAGGSAKQGRHRENQ 410

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537
           AVLPLRGKILNV  A  +K+ ++ +I  L+ ALG    + ++  E LRY K
Sbjct: 411 AVLPLRGKILNVERARFDKMLSSNEIGTLITALGTGIGKEEFNIEKLRYHK 461


>gi|328466994|gb|EGF38095.1| DNA gyrase subunit B [Lactobacillus rhamnosus MTCC 5462]
          Length = 352

 Score =  339 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 141/357 (39%), Positives = 201/357 (56%), Gaps = 11/357 (3%)

Query: 334 LRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            + ALTR I  YA  +   +        DD+      ++SV   +P+F GQTKTKL + D
Sbjct: 1   FKTALTRVINDYARRSGALKDSDDPLSGDDVREGLTAVVSVKHPDPQFEGQTKTKLGNSD 60

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
           A+  V+    D F+ +L+++  +   +++  +  S+ RL  ++ RE   +K+ +    LP
Sbjct: 61  ARTVVDRTFSDHFNKFLMEHLADGKLIIDKAMLASKARLAAKRAREVTRKKSGLEISNLP 120

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLAD +      +ELFIVEGDSAGGSAK  R+R  QA+LP+RGKILNV  A  E+I  N
Sbjct: 121 GKLADNTSKDPEISELFIVEGDSAGGSAKSGRSRLTQAILPIRGKILNVEKASMERILAN 180

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I  L  A+G      +     RY K+IIMTDADVDGAHI +LLLT  Y+ M  +++  
Sbjct: 181 EEIRTLFTAMGTGFGQDFDISKARYHKLIIMTDADVDGAHIRTLLLTLIYRYMRPVLDAG 240

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           ++++  PPL+R+ QG    Y   +E  Q IL +       K +I R+KGLGEM ASQL E
Sbjct: 241 YVYIAQPPLYRLRQGKMMRYIDSDEELQDILGQLPPS--PKPDIQRYKGLGEMDASQLWE 298

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685
           T MD + R LLRV         +        LMG   + R KFI+E A F+D  ++ 
Sbjct: 299 TTMDPDTRRLLRVS----PKDAEQADGIFEMLMGDHVEPRRKFIEENAVFVDPNNID 351


>gi|13517043|dbj|BAB40404.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04473]
          Length = 474

 Score =  339 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 183/483 (37%), Positives = 278/483 (57%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALSD L  +V +   I+ Q++ RG PL P++      +  
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDHLKASVHKDGKIWEQEYERGKPLYPVKAVGDT-DFS 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF PD +IF     ++   L    +  A+L+  +    +  ++  +K      E F
Sbjct: 60  GTVVTFHPDNQIFQQTIEYNYETLASRMRELAFLNKGLTITLTDKRQTDDKG-EFISERF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           +   GL  +++    NR  I  ++ + + EK G     VE A+ +       + SY N I
Sbjct: 119 FSEEGLSEFVRFLDGNRDPIIKDVISMEGEKNGVP---VEVAMIYNSSYAENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH +G R  LT  +KK+A+ +    K    I  DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLAGFRRGLTSSLKKFADASGMLDKLKFDIAGDDFREGLTAIISVKVSEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + +    V  A+ +  + ++ +NP +A  ++E VI  ++ R   +K RE+  
Sbjct: 236 GQTKTKLGNREVTSAVSQAVSEMIEIHMEENPNDAKTIIEKVILAAQARHAAKKAREMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKL+DCS       E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV
Sbjct: 296 RKTVMSIGGLPGKLSDCSNQDPAECEVFLVEGDSAGGTAKQGRDRAFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASL 554
             A S K+  N++I ++  ALG    ++   +      LRY K++IM DADVDG+HIA+L
Sbjct: 356 EKAMSHKVFENEEIKNIFTALGVTIGTEEDSKALNLSKLRYHKIVIMCDADVDGSHIATL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +LIE  H+++ +PPL+ I +G K  YA +E+ ++ I  EF    KG + +
Sbjct: 416 ILTFFFRYMKELIEAGHIYIATPPLYLIKKGQKKRYAWNEDEREAIANEF----KGSVSV 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|309807646|ref|ZP_07701588.1| DNA gyrase, B subunit, C-terminal domain protein [Lactobacillus
           iners LactinV 01V1-a]
 gi|308169112|gb|EFO71188.1| DNA gyrase, B subunit, C-terminal domain protein [Lactobacillus
           iners LactinV 01V1-a]
          Length = 479

 Score =  339 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 168/486 (34%), Positives = 247/486 (50%), Gaps = 30/486 (6%)

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            ITF+PD KIF     +    + +  +  A+L   V+   + +++   K      +EFY+
Sbjct: 1   MITFKPDSKIFSTTI-YKYETIQERLREAAFLLKGVRFTLTDERDPQRK------DEFYY 53

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILT 324
             G+K+++    E++  I       + E        VE++  + +   E   S+ N + T
Sbjct: 54  DDGIKSFVSYLNEDKDTIGDIF-YFEGEIDNI---KVEFSGQYNDGYSENVVSFVNNVRT 109

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREP--EFA 380
            +GG+HE+G R   TR    YA+     +         D       +LSV I E   EF 
Sbjct: 110 IDGGSHEAGARSGFTRAFNDYAKKQGLLKTKDKGLEGSDYREGLSAVLSVKIPEELLEFE 169

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTK KL +  A+  V+N + +   +YL++N   A KL++      E R   +K R+ +R
Sbjct: 170 GQTKGKLGTPQARSVVDNIIYEQLSYYLMENGEFAQKLVQKAQRAREAREAAKKARDESR 229

Query: 441 KTAIRKLR--LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
               RK +  L GKL           ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN
Sbjct: 230 SGKKRKKKEVLSGKLTPAQSRNPEKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLN 289

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
              A  + I  N++I  ++  +G      +   D  Y K+IIMTDAD DGAHI  LLLTF
Sbjct: 290 TQKARLQDIFKNEEINTMIHTIGAGVGPDFEIADANYNKIIIMTDADTDGAHIQILLLTF 349

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           FY+ M  +IE   +++  PPL+++ +G        Y+  +E  QK ++EF K       +
Sbjct: 350 FYRYMKPMIEAGRVYIALPPLYKLEKGQGKNVDIKYSWTDEELQKNVKEFGK----GYSL 405

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
            RFKGLGEM A QL ET M+ N RTL+RV+I+         +  +  LMG K   R K+I
Sbjct: 406 QRFKGLGEMNADQLWETTMNPNTRTLIRVKIDD----AALAEHRVTTLMGDKVAARRKWI 461

Query: 675 QERASF 680
            E   F
Sbjct: 462 DENVKF 467


>gi|9971327|dbj|BAB12470.1| DNA gyrase B subunit [marine bacterium MBIC1357]
 gi|13517027|dbj|BAB40396.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04465]
          Length = 474

 Score =  339 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 185/483 (38%), Positives = 279/483 (57%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALS+ L  TV R+  I+ Q++ RG  L P++      +K 
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSEHLKATVHREGKIWEQEYERGKTLYPVKTIGD-SDKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF+PDP+IF     ++   L    +  AYL+  +       +   E     E E F
Sbjct: 60  GTIVTFKPDPQIFQQTLEYNYDTLASRMRELAYLNKGITVHLVDKRHKKEDG-SFEGETF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           +   GL  +++    NR  + +++ + + EK G     VE A+ +       + SY N I
Sbjct: 119 HSEEGLSEFVKFLDGNREPLMNDVISFEGEKNGVP---VEVAMVYNTSYAENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLSGFRRGLTHTLKKYADESGMLDKLKFDIAGDDFREGLTAIVSVKVAEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + +   +V  A+ +    YL ++P +A  +++ VI  ++ R   +K RE+  
Sbjct: 236 GQTKTKLGNREVSASVSQAVSEMLTDYLEEHPEDAKTIVQKVILAAQARHAAQKAREMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV
Sbjct: 296 RKTVMSIGGLPGKLSDCSEQDPEKCEVFLVEGDSAGGTAKQGRDRAFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASL 554
             A + K+  N++I ++  ALG    ++   +      LRY KV+IM DAD+DG+HIA+L
Sbjct: 356 EKAMTHKVFENEEIKNIFTALGVTIGTEEDSKALNLSKLRYHKVVIMCDADIDGSHIATL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +LIE  H+++ +PPL+ + +G K  YA  ++ +  I EEF     G + +
Sbjct: 416 ILTFFFRYMKELIENGHIYIATPPLYLVKKGQKKSYAWTDKERDAIAEEFG----GSVSV 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|145496633|ref|XP_001434307.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124401431|emb|CAK66910.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1220

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 130/664 (19%), Positives = 265/664 (39%), Gaps = 67/664 (10%)

Query: 52  LEGLEPVRMRPGMYIGGTD---------------------EKALHHLFSEVIDNAMDEVI 90
           +  +E +  RP  YIG                          A   +F +++ NA D + 
Sbjct: 1   MSHIEHILNRPDTYIGSVQKMNELMWIVKNGKMIQKEIEYVPAFFKIFDDILVNAADNIQ 60

Query: 91  AGY----ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146
                   + + V +     ++V ++G+ IPVE H ++      E+I      G  FD++
Sbjct: 61  RNNQTYKMSSLRVEI--GNQISVKNDGQPIPVEIHKEY-QLYVPELIFGVSLTGSNFDDT 117

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
              + GG +G G  + N  S E  V V   +    Q +S  +    +   ++++     +
Sbjct: 118 EKRVVGGRNGYGAKLTNVYSSEFSVEVCDGSNYLKQVWSNNMSNKQIPIIKQMKKDPFVQ 177

Query: 207 ITFRPDPKIFGDK--AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           IT++PD K FG         A L++     A + G     +  D++I         + + 
Sbjct: 178 ITYKPDFKRFGMNEIEEDTQALLVRRVYDMAGIYGNRINVYLNDEKIPINSFQKYVDLYL 237

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILT 324
               +K Y +     R                      E  +++     +  S+ N+I T
Sbjct: 238 PSNSIKIYDKEMTTPR---------------------WEVVVSYSATQFQHVSFVNSIFT 276

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
            +GGTH + +   L + I+   +  +  + + +    +  S    ++  I  P F  QTK
Sbjct: 277 SKGGTHVTHVTDKLIQEIQNEMKSNKKYKHLEVQKYQIKQSLWIFVNCLINNPTFDSQTK 336

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN--RKT 442
             L +        +  +        +  +  T ++E + ++++ +   +  +++   + +
Sbjct: 337 ENLTTRVTDFGGTDEEKFKVTEKFSK-ALIKTDIIETIFQQAKAKADAKLNKQLKGTKTS 395

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNV 499
            +  +       D  +  +    L + EGDSA   A    +   R    V PL+GK+LNV
Sbjct: 396 KLHGIEKLDDANDAGKKNSEFCTLILTEGDSAKALAMAGIDIVGRDRYGVFPLKGKLLNV 455

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTF 558
             A  ++I +N++I +L++ +G +   +Y +   LRY  V+IMTD D+DG+HI  L++ F
Sbjct: 456 REASVKQIMDNEEIQNLIKIIGLQKDREYGDLKSLRYGSVMIMTDQDIDGSHIKGLIINF 515

Query: 559 FYQEMYDLIE-QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
            +     L++ +  L     PL + T+G +++     +   K  +          +I  +
Sbjct: 516 IHHFWPSLLKYKGFLKEFVTPLIKATKGNQTIPFFTVQDFNKFAQ---IQDIKSWKIKYY 572

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           KGLG     + +E   +    T ++     +    +      NK    KA++R +++ + 
Sbjct: 573 KGLGTSDDLEAQEYFRNLISHT-IQFRY-DNEEDDQSIDLCFNK---KKANDRKQWLAQY 627

Query: 678 ASFI 681
              +
Sbjct: 628 NHDL 631


>gi|9971331|dbj|BAB12472.1| DNA gyrase B subunit [Cellulophaga lytica]
          Length = 474

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 189/483 (39%), Positives = 275/483 (56%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALS+ L  TV R+  I+ Q++S+G  L P++      ++ 
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSNHLKATVFREGKIWEQEYSKGKALYPVKSIGDT-DET 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF PD  IF     +    L    +  AYL+  V    +  +   EK      E F
Sbjct: 60  GTIVTFYPDDTIFTQTTEYSYETLSSRMRELAYLNKGVTITITDKRVTDEKG-EFLSEVF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTI 322
           +   GLK +++    NR  +  E+ + + EK G     VE A+ +     E    Y N I
Sbjct: 119 FSEEGLKEFIKFLDGNREQLIREVVSMEGEKNGIP---VEVAMVYNTSYSENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLSGFRRGLTSTLKKYADASGMLEKLKFEIQGDDFREGLTAIVSVKVAEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + +    V  A+ +   +YL +NP +A  +++ VI  ++ R    K RE+  
Sbjct: 236 GQTKTKLGNREVSSAVSQAVSEMLTNYLEENPDDAKVIVQKVILAAQARHAATKAREMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKL+DCS+  A   E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV
Sbjct: 296 RKTVMSIGGLPGKLSDCSEQDATKCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASL 554
             A   K+  N++I ++  ALG    ++        E LRY KV+IM DADVDG+HI +L
Sbjct: 356 EKAMQHKVFENEEIKNIYTALGVTIGTEEDSKALNLEKLRYHKVVIMCDADVDGSHIETL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +LIE  H+++ +PPL+ + +GTK  YA  ++ + +I + F     G + I
Sbjct: 416 ILTFFFRFMRELIEAGHIYIATPPLYLVKKGTKKRYAWSDKERDEIADSF----NGSVGI 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|167957373|ref|ZP_02544447.1| DNA gyrase subunit B [candidate division TM7 single-cell isolate
           TM7c]
          Length = 486

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 173/499 (34%), Positives = 264/499 (52%), Gaps = 40/499 (8%)

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P IF +   FD   ++   + +AYL+  V T    ++    K        FYF GG+K+Y
Sbjct: 1   PTIFKETVNFDYKWVVNYLRHQAYLTKGVYTSVVDERTGERKA-------FYFEGGIKSY 53

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++     + ++S +IF  +   K      VE A+ + +     +  + N +LT +GGTH 
Sbjct: 54  VKNLNIGKEVLSEDIFYVE---KQIEDCMVEIAVQYNDTYVEVVKPFANNVLTPDGGTHL 110

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G R ALTR I  YA       ++  ++  DD+      ++ V + +P+F GQTK KL +
Sbjct: 111 VGFRTALTRVINDYARKNNLLKEKEDNLTGDDIREGLTAVILVKLPDPQFEGQTKNKLGN 170

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRKLR 448
            + +R V+  + + F +YL +NP  A K++    +     +  R  +  V RK A   L 
Sbjct: 171 PEMRRYVDQVMSEYFAYYLEENPATAKKVVGKATLAARARKAARAARDNVIRKGAFEGLN 230

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LP KL DCS       ELFIVEG+SA GSAK  R+ + QA+LPLRGK+LN   A  +K+ 
Sbjct: 231 LPSKLTDCSSRNRKDCELFIVEGNSAAGSAKDGRDSTIQAILPLRGKVLNTERARFDKMF 290

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
            N +I+ L++A+G     Q+    +RY+K+I MTDADVDGAHI++LL+TFF++ M ++IE
Sbjct: 291 ANAEIVSLIKAMGVGIGDQFDISGIRYDKIIFMTDADVDGAHISTLLMTFFFRYMSEVIE 350

Query: 569 QKHLFLISPPLFRITQG----TKSVYAHDEEHKQKIL-EEFKKHGKGKIEI--------- 614
             H++L  PPLF +++G     K  Y +DE   ++ L E+  +     ++I         
Sbjct: 351 AGHVYLAKPPLFGLSKGTGSNRKIDYIYDEAALEEKLTEKINERKAAGVKIDENAERFKQ 410

Query: 615 ------SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKAD 668
                  RFKGLGEM ASQL ET M+   RTL++V I       +       KLMG   +
Sbjct: 411 AGYTAQQRFKGLGEMDASQLWETTMNPENRTLVKVNIED----AERADAIFTKLMGDSVE 466

Query: 669 ERFKFIQERAS--FIDDVG 685
            R  FIQ  A+   ++D+ 
Sbjct: 467 LRKNFIQTNAAKVNVEDLD 485


>gi|9971349|dbj|BAB12481.1| DNA gyrase B subunit [Stanierella latercula]
          Length = 474

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 182/483 (37%), Positives = 281/483 (58%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALSD LH  V +   ++ Q++ RG PL P++      +  
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDHLHAIVHKDGKVWEQEYERGKPLYPVKSTGDT-DFN 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF+PDP IF     ++   L    +  AYL+  +    +  +   E+      E F
Sbjct: 60  GTIVTFKPDPTIFQQTLEYNYDTLASRMRELAYLNKGITIILTDKRHTDEEG-NHVSETF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           +   GLK +++    +R+ I  ++ + + EK       VE A+ + +     + SY N I
Sbjct: 119 HSEEGLKEFVKFLDTSRNAIIGDVISMEGEKNDIP---VEVAMIYNDSYAENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KKYA+ +    K    +  DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLSGFRRGLTSTLKKYADASGMLDKLKFEVAGDDFREGLTAIVSVKVAEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + +    V  A+ +  ++YL +NP +A  +++ VI  ++ R   +K RE+  
Sbjct: 236 GQTKTKLGNREVTSAVSQAVSEMLENYLEENPSDAKTIVQKVILAAQARHAAKKAREMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R  QA+LPLRGKILNV
Sbjct: 296 RKTVMSIGGLPGKLSDCSEQDPALCEVFLVEGDSAGGTAKQGRDRMFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASL 554
             A   K+  N++I ++  ALG    ++   +      LRY K++IM DADVDG+HI++L
Sbjct: 356 EKAMHHKVFENEEIKNIFAALGVTIGTEEDSKALNLSKLRYHKIVIMCDADVDGSHISTL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +LIE  H+++ +PPL+ + +G K  YA +++ +  I++EF ++ K    I
Sbjct: 416 ILTFFFRYMKELIEAGHIYIAAPPLYLVKKGAKKQYAWNDDQRDMIVKEFGENSK----I 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|10281024|dbj|BAB13753.1| type II DNA topoisomerase [Candida parapsilosis]
          Length = 779

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 120/635 (18%), Positives = 230/635 (36%), Gaps = 39/635 (6%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPN 126
           T    L+ +F E++ NA D  I       I+V +D  N  + V ++G+GIPVE H K   
Sbjct: 10  TIVPGLYKIFDEILVNAADNKIRDPSMKNIKVRIDPENNVIQVFNDGKGIPVEMHTK-EK 68

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR--QNTIFSQKF 184
               E+I   L     +D+   +++GG +G G  + N  S +  V  A      ++ Q +
Sbjct: 69  MYIPELIFGNLLTSSNYDDDQKKVTGGRNGFGAKLCNIFSTQFEVETADLNTGKLYKQTW 128

Query: 185 SRGIPLSPLEKK---EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241
           +  +      K    +  +                        + L +            
Sbjct: 129 TDNMTKVGKPKINALKTKKEYTKITFKPDLSKFDMDSLDEDLLSVLRRRVYDLCGTVKNC 188

Query: 242 KTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
               +  +     +    +             + +   ++  +                 
Sbjct: 189 NIYLNDKRLPVTSFKSYVEMYVKAIKERSPEPEGEGAPKNYTTIVH--------EVFNER 240

Query: 302 VEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA-LTRGIKKYAELTQNKRAISIISD 360
            E A A  + +    S+ N+I T  GGTH   +    +T+ ++  ++  + K+ + I  +
Sbjct: 241 WEVAFAVSDGSFNQVSFVNSIATTAGGTHVKYVSDQIITKLVETLSKKEKGKKKLMIKPN 300

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           ++  +    ++  I  P F  QTK +L +  +Q   +       +             + 
Sbjct: 301 EVRDNMFIFINCLIENPAFTSQTKEQLTTKVSQFGGKEKFVASDNLISRVLKTGIADKIR 360

Query: 421 WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
            +   +E++  ++   + +RK+ I+                    L + EG SA   A  
Sbjct: 361 DIANANEDKALQKV--DGSRKSRIKGQVNLVDANKAGTRDGLKCTLILTEGLSALNLAVA 418

Query: 481 ARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED---LR 534
                 R      PLRGK+LNV  A +++I  N +I  L Q +G + +  Y  E+   LR
Sbjct: 419 GLTVIGRDYYGCFPLRGKLLNVREASADQIAKNAEINSLKQIIGLQHKKTYNAENIKSLR 478

Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQG----TKSV 589
           Y  + IMTD D DG+HI  L++ F       L++    L     P+ ++T       K +
Sbjct: 479 YGHIPIMTDQDQDGSHIKGLIINFLETSFPGLLDIPGFLLEFITPIVKVTVKGRGAKKII 538

Query: 590 YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDL 649
             +     +   +   +    +     +KGLG     + +E     ++  L R       
Sbjct: 539 PFYSMPEFETWRD--GEGQTCRWTQKYYKGLGTSTPMEAREYFTALDRH-LKRFH-ALQG 594

Query: 650 NSLKDTQDSINKLMGTKADERFKFIQE--RASFID 682
                   + +K    KADER +++Q     + +D
Sbjct: 595 EDSSCIDLAFSK---KKADERKEWLQNFVPGNQLD 626


>gi|116326225|ref|YP_802945.1| DNA topoisomerase subunit DNA-dependent ATPase [Enterobacteria
           phage RB32]
 gi|228861318|ref|YP_002854339.1| gp60plus39 DNA topoisomerase subunit [Enterobacteria phage RB14]
 gi|115343818|gb|ABI94827.1| DNA topoisomerase subunit DNA-dependent ATPase [Enterobacteria
           phage RB32]
 gi|227438334|gb|ACP30647.1| gp60plus39 DNA topoisomerase subunit [Enterobacteria phage RB14]
 gi|291290216|dbj|BAI83011.1| topoisomerase II large subunit [Enterobacteria phage AR1]
          Length = 605

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 142/657 (21%), Positives = 235/657 (35%), Gaps = 80/657 (12%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTD-----------------EKALHHLFSEVIDNAMDE 88
            + I+IL  +E ++ R GMYIG +                     L  L  E+IDN++DE
Sbjct: 3   KNEIKILSDIEHIKKRSGMYIGSSANEMHERFLFGKWESVQYVPGLVKLIDEIIDNSVDE 62

Query: 89  VIA---GYANLIEVSLDGNGFLTVVDNGRGIPVENH--PKFPNKSTLEIILTTLHAGGKF 143
            I     +AN I V++  N  +TV DNGRGIP      P            T   AGG F
Sbjct: 63  GIRTKFKFANKINVTI-KNNQVTVEDNGRGIPQAMVKTPTGEEIPGPVAAWTIPKAGGNF 121

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
            +    ++GG++GVG S+ N  S                + S G+     E        +
Sbjct: 122 GDDKERVTGGMNGVGSSLTNIFSVMFVGETGDGQNNIVVRCSNGMENKSWEDIPG--KWK 179

Query: 204 GTRITFRPDPKIFGDKA--GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           GTR+TF PD   F             L   Q+ A +   ++  ++  K            
Sbjct: 180 GTRVTFIPDFMSFETNELSQVYLDITLDRLQTLAVVYPDIQFTFNGKKV----------- 228

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
                G  K Y +   E+  +   E  +               A+    +     +Y N 
Sbjct: 229 ----QGNFKKYARQYDEHAIVQEQENCS--------------IAVGRSPDGFRQLTYVNN 270

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVF-IREPEFA 380
           I T  GG H   +   +           + K  I +    +      ++ V  ++   F 
Sbjct: 271 IHTKNGGHHIDCVMDDICE---DLIPQIKRKFKIDVTKARVKECLTIVMFVRDMKNMRFD 327

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
            QTK +L S   +     +        + +  +    +L  +IE +  R    ++    +
Sbjct: 328 SQTKERLTSPFGEIR---SHIQLDAKKISRAILNNEAILMPIIEAALARKLAAEKAAETK 384

Query: 441 KTAIRKLRLPG-KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
                        +          T LF+ EGDSA G     R++      PLRGK+LN 
Sbjct: 385 AAKKASKAKVHKHIKANLCGKDADTTLFLTEGDSAIGYLIDVRDKELHGGYPLRGKVLNS 444

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
                  +  N+++ D+    G     +   E+L Y  + IMTDAD DG       L  F
Sbjct: 445 WGMSYADMLKNKELFDICAITGLVLGEKA--ENLNYHNIAIMTDADHDGLGSIYPSLLGF 502

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
           +    +L EQ  +  +  P+     G K  + +     +   +   KH      I   KG
Sbjct: 503 FSNWPELFEQGRIRFVKTPVIIAQVGKKQEWFYTVAEYESAKDALPKH-----SIRYIKG 557

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           LG +  S+ +E   +          +   +   ++ ++    LMG  AD R +++ +
Sbjct: 558 LGSLEKSEYREMIQNP---------VYDVVKLPENWKELFEMLMGDNADLRKEWMSQ 605


>gi|237820996|ref|ZP_04596841.1| DNA gyrase subunit B [Streptococcus pneumoniae CCRI 1974M2]
          Length = 444

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 170/439 (38%), Positives = 253/439 (57%), Gaps = 14/439 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I+V 
Sbjct: 10  AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVF 69

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGVG S
Sbjct: 70  IEPDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 128

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L V V +   I  Q++ RG  ++ LE      ++ GT + F PDPKIF +  
Sbjct: 129 VVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFIPDPKIFTETT 187

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD  +L K  Q  A+L+  ++   +  ++  E     + + +++ GG+ +Y++   EN+
Sbjct: 188 TFDFDKLNKRIQELAFLNRGLQISITDKRQGLE-----QTKHYHYEGGIASYVEYINENK 242

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
            +I         E       TVE A+ +     E   S+ N I T EGGTHE G R ALT
Sbjct: 243 DVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALT 299

Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA   +  +    ++  +D+      ++SV    P+F GQTKTKL + +  +   
Sbjct: 300 RVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 359

Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
               + F  +L++NP  A +++E  ++        +R +    +K+ +    LPGKLADC
Sbjct: 360 RLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADC 419

Query: 457 SQNIAHGTELFIVEGDSAG 475
           S N    TELFIVEGDSAG
Sbjct: 420 SSNNPAETELFIVEGDSAG 438


>gi|13517037|dbj|BAB40401.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04470]
          Length = 474

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 185/483 (38%), Positives = 279/483 (57%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALS+ L  TV R+  I+ Q++ RG  L P++      +K 
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSEHLKATVHREGKIWEQEYERGKTLYPVKTIGD-SDKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF+PDP+IF     ++   L    +  AYL+  +       +   E     E E F
Sbjct: 60  GTIVTFKPDPQIFQQTLEYNYDTLASRMRELAYLNKGITVHLVDKRHKKEDG-SFEGETF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           +   GL  +++    NR  + +++ + + EK G     VE A+ +       + SY N I
Sbjct: 119 HSEEGLSEFVKFLDGNREPLMNDVISFEGEKNGVP---VEVAMVYNTSYAENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLSGFRRGLTHTLKKYADESGMLDKLKFDIAGDDFREGLTAIVSVKVAEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + +   +V  A+ +    YL ++P +A  +++ VI  ++ R   +K RE+  
Sbjct: 236 GQTKTKLGNREVSASVSQAVSEMLTDYLEEHPEDAKTIVQKVILAAQARHAAQKAREMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV
Sbjct: 296 RKTVMSIGGLPGKLSDCSEQDPEKCEVFLVEGDSAGGTAKQGRDRAFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASL 554
             A + K+  N++I ++  ALG    ++   +      LRY KV+IM DAD+DG+HIA+L
Sbjct: 356 EKAMTHKVFENEEIKNIFTALGVTIGTEEDSKALNLSKLRYHKVVIMCDADIDGSHIATL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +LIE  H+++ +PPL+ + +G K  YA  ++ +  I EEF     G + +
Sbjct: 416 ILTFFFRYMKELIENGHIYIATPPLYLVKKGQKKSYAWTDKERDTIAEEFG----GSVSV 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|10039325|dbj|BAB13323.1| DNA gyrase B subunit [Tenacibaculum mesophilum]
 gi|10039345|dbj|BAB13325.1| DNA gyrase B subunit [Tenacibaculum mesophilum]
 gi|10039347|dbj|BAB13326.1| DNA gyrase B subunit [Tenacibaculum mesophilum]
 gi|10039349|dbj|BAB13327.1| DNA gyrase B subunit [Tenacibaculum mesophilum]
          Length = 474

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 178/483 (36%), Positives = 273/483 (56%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALSD L  TV ++  I+ Q++ RG  L P++      +  
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDHLTATVHKEGKIWQQEYERGKTLYPVKTIGDT-DFT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT ++F PD  IF     ++   L    +  AYL+  +    +  +   ++      E F
Sbjct: 60  GTIVSFLPDKSIFQQTTEYNYDTLATRMRELAYLNKGITITLTDKRNQDDEGNN-ISETF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           +   GL  +++     R+ I  ++ + + EK G     VE A+ + +     + SY N I
Sbjct: 119 HSEEGLSEFVKFLDGTRTQIIQDVISMEGEKNGIP---VEVAMVYNDSYAENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KKYA+ +   + +      DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLSGFRRGLTHTLKKYADESGLLKNVKFEIAGDDFREGLTAIVSVKVAEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + +    V  A+ +    YL +NP +A  +++ VI  ++ R   RK RE+  
Sbjct: 236 GQTKTKLGNREVSAAVSQAVSEMLTDYLEENPNDAKTIVQKVILAAQARHAARKAREMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV
Sbjct: 296 RKTVMSIGGLPGKLSDCSETDPAQCEIFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASL 554
             A   K+  N++I ++  ALG    ++          LRY KV+IM DADVDG+HIA+L
Sbjct: 356 EKAMQHKVFENEEIKNMFTALGVTIGTEDDPRELNLTKLRYHKVVIMCDADVDGSHIATL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +++EQ ++++ +PPL+ + +G K  YA D+  +  I ++      G + I
Sbjct: 416 ILTFFFRYMREMVEQGYIYIATPPLYLVKKGQKREYAWDDNQRDLIAQKMG----GSVTI 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|9971343|dbj|BAB12478.1| DNA gyrase B subunit [Flammeovirga aprica]
          Length = 476

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 185/483 (38%), Positives = 275/483 (56%), Gaps = 16/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  TY++SGGLHGVG+S VNALS +L VTV R   +F Q++  GIP   ++   +  +  
Sbjct: 1   DKDTYKVSGGLHGVGVSCVNALSTDLKVTVHRAGKVFQQEYKTGIPQYDVKTIGET-DIT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F PD  IF     ++   +    +  +YL+  +       +E  E+     +E F
Sbjct: 60  GTTVQFWPDLSIFTSGV-YNYDTVASRLRELSYLNAGITIHLEDKREQDEEG-ENIQETF 117

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTI 322
           Y  GGL  Y+      R  +       + EK       V+ A+ +     E   SY N I
Sbjct: 118 YSEGGLSEYVSYLDNTRQALLGTPIFMEGEKANIQ---VQVAMTYNTSFSEHVFSYVNNI 174

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH +G R +LTR +K YA+ T    K  I I  DD       I+SV + EP+F 
Sbjct: 175 NTYEGGTHVAGFRRSLTRTLKSYADSTGLLDKVKIDIAGDDFREGLTAIISVKVPEPQFE 234

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +    V++A+ +    +L ++P EA  +++ VI  ++ R   RK RE+ +
Sbjct: 235 GQTKTKLGNSEVSGAVDSAVTETLKTFLEEHPKEAKNIVQKVITAAQARHAARKAREMVQ 294

Query: 441 KTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +   +    LPGKL+DCS+      EL++VEGDSAGGSAKQ R+R+ QA+LPL+GKILNV
Sbjct: 295 RKNVLTGTGLPGKLSDCSEKDPALCELYLVEGDSAGGSAKQGRDRNFQAILPLKGKILNV 354

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASL 554
             A   KI +N++I +++ ALG R  ++  E     E LRY K+IIMTDADVDG+HI +L
Sbjct: 355 EKAQEHKIYDNEEIKNIITALGVRFGTENDEKELNLEKLRYHKIIIMTDADVDGSHIRTL 414

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LT F++ M  LIEQ +L++  PPL+ + +G +  Y   E+ + + ++EF    +GK+ I
Sbjct: 415 ILTLFFRYMKPLIEQGYLYIAQPPLYLVKKGKQEKYCWSEDDRVRAIQEFGGD-EGKVGI 473

Query: 615 SRF 617
            R+
Sbjct: 474 QRY 476


>gi|9971345|dbj|BAB12479.1| DNA gyrase B subunit [Cytophaga marinoflava]
          Length = 474

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 181/483 (37%), Positives = 273/483 (56%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALSD L  TV R   I+ Q++ +G  + P++      + R
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDHLRATVYRDGKIWEQEYEKGKAMYPVKGIGDTDD-R 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF PDP IF     F+   L    +  +YL+  +       ++  EK   P  E F
Sbjct: 60  GTAVTFLPDPTIFQQTTEFNYDTLASRMRELSYLNKGITITLMDKRQKDEKGEFP-VETF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           +   GLK +++    NR  I  ++ + + EK       VE A+ + +     + SY N I
Sbjct: 119 HSDEGLKEFVRFMDGNRQPIIGDVISMEGEKNDIP---VEVAMIYNDSYAENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH +G R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLAGFRRGLTSSLKKYADASGMLDKLKFEIAGDDFREGLTAIISVKVAEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + +    V  A+ +  + YL ++P +A  +++ VI  ++ R   +K RE+  
Sbjct: 236 GQTKTKLGNREVTSAVSQAVSEMVEIYLEEHPDDAKIIVQKVILAAQARHAAKKAREMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKLADCS+      E+F+VEGDSAGG+AK  R+R+ QA+LPLRGKILNV
Sbjct: 296 RKTVMSIGGLPGKLADCSETDPQACEVFLVEGDSAGGTAKMGRDRNFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASL 554
             A   K+  N++I ++  ALG    ++   +      LRY K++IM DADVDG+HIA+L
Sbjct: 356 EKAMQHKVFENEEIKNIFTALGVTIGTEEDSKALNLSKLRYHKIVIMCDADVDGSHIATL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +L+E  H+++ +PPL+ + +G K  YA  E+ + +  E+          +
Sbjct: 416 ILTFFFRYMRELVEGGHVYIATPPLYLLKKGKKMRYAWSEKERDEYNEQMGGSAG----V 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|9971335|dbj|BAB12474.1| DNA gyrase B subunit [Cellulophaga lytica]
          Length = 474

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 189/483 (39%), Positives = 275/483 (56%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALS+ L  TV R+  I+ Q++ RG  L P++   +     
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSNSLKATVYREGKIWEQEYERGKALYPVKSIGETEE-T 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF PD  IF     ++   L    +  AYL+  V    +  +   EK      E F
Sbjct: 60  GTIVTFYPDDTIFTQTTEYNYETLSNRMRELAYLNKGVTISITDKRVKDEKG-EFLSEVF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTI 322
           Y   GLK +++    NR  +  E+ + + EK G     VE A+ +     E    Y N I
Sbjct: 119 YSEEGLKEFIKFLDGNREQLIREVVSMEGEKNGIP---VEVAMVYNTSYSENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLSGFRRGLTSTLKKYADASGMLDKLKFEIQGDDFREGLTAIVSVKVAEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + +    V  A+ +   +YL +NP +A  +++ VI  ++ R    K RE+  
Sbjct: 236 GQTKTKLGNREVSSAVSQAVSEMLTNYLEENPDDAKVIVQKVILAAQARHAATKAREMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKL+DCS+  A   E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV
Sbjct: 296 RKTVMSIGGLPGKLSDCSEQDATKCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASL 554
             A   K+  N++I ++  ALG    ++        + LRY KV+IM DADVDG+HI +L
Sbjct: 356 EKAMQHKVFENEEIRNIYTALGVTIGTEEDSKALNLDKLRYHKVVIMCDADVDGSHIETL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +LIE  H+++ +PPL+ + +GTK  YA +++ + +I + F     G + I
Sbjct: 416 ILTFFFRFMRELIEGGHVYIATPPLYLVKKGTKKRYAWNDKERDEIADSF----NGSVGI 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|123484430|ref|XP_001324264.1| topoisomerase II [Trichomonas vaginalis G3]
 gi|121907144|gb|EAY12041.1| topoisomerase II [Trichomonas vaginalis G3]
          Length = 1458

 Score =  337 bits (865), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 127/675 (18%), Positives = 252/675 (37%), Gaps = 75/675 (11%)

Query: 45  DASSIRILEGLEPVRMRPGMYIGGTDEK----------------------ALHHLFSEVI 82
                  L   E V  RP  YIG  + +                       L+ +F E++
Sbjct: 13  SDEQYVKLTHREHVLTRPDSYIGSIEPRECKMWVCNEDGKFEFREISYVPGLYKIFDEIL 72

Query: 83  DNAMDEVIAGYA-NLIEVSLDG-NGFLTVVDNGRGIPVENH---PKFPNKSTLEIILTTL 137
            NA D          I+V +D     ++V ++G+GI  +              E I + L
Sbjct: 73  VNAADNKQRDPPLTTIKVEVDPAQNRISVWNDGKGISTQKQFSPNDNCEYYIPEFIFSQL 132

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA--RQNTIFSQKFSRGIPLSPLEK 195
                +++   +++GG +G G  + N  S + H+ +    +   + Q  +  +      K
Sbjct: 133 LTSSNYNDKQEKVTGGRNGYGAKLANIFSKKFHINIYNADEGINYQQTITDNMTNIQPPK 192

Query: 196 KE-KVRNKRGTRITFRPDPKIF--GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
            +        T I+F PD + F            + +     A +  +VK  W+ ++   
Sbjct: 193 LKNGKGKGSYTEISFWPDLERFNLQTITKDHVDLIRRRVYDLAGILPKVKIFWNGNQVPI 252

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
           +K      + +                +  +   +   K EK  T +  V  + +     
Sbjct: 253 KK-WEDYCKVYL---------------KEDVKPLVCEVKNEKGYTWKIGVAPSKSRE--- 293

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSV 372
            +  S+ N + T  GGTH   +   +T+ I  Y +  ++ + +      +       +  
Sbjct: 294 FQQISFVNCVATSNGGTHVDVVVNQITKYITDYLKNRRSGK-VETKPSVVKNFLYVFVDS 352

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
            +  P F  QTK +L     +   +  L D F   +++     T ++  V E +  + +R
Sbjct: 353 LVINPSFDSQTKERLTLDQKKLKDDCKLPDNFLDKILK-----TDIVALVTEYANFKEQR 407

Query: 433 RKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ---ARNRSNQAV 489
           +       K     +          +  +    L + EGDSA  +A        R    V
Sbjct: 408 KVANMKGTKKGRLIINKLEDANMAGKAESLKCTLILTEGDSAKATAVTGLATIGRDYYGV 467

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED----LRYEKVIIMTDAD 545
            PLRGK+LN     ++K+  N +I ++++ +G     +Y  +D    LRY  ++IM D D
Sbjct: 468 FPLRGKLLNTRDISAKKLSENDEIQNIIKIMGLDPMEKYENDDSMKRLRYGSIMIMADQD 527

Query: 546 VDGAHIASLLLTFFYQEMYDLI-EQKHLFLISPPLFRITQGTKS---VYAHDEEHKQKIL 601
           VDG+HI  L++ F +    +L+ ++  +     P+ ++T+G      +         +  
Sbjct: 528 VDGSHIKGLIINFVHSMWPNLLKKRNFITEFITPIVKVTKGNNKKGAISFFTIPEFSQWK 587

Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
                +     ++  +KGL    A + KE   + +K    +V I  + N  +    +  K
Sbjct: 588 A--ANNNGKGYKMKYYKGLATSTAEEAKEYFSNISKH--KKVFIYTNENDEERINLAFAK 643

Query: 662 LMGTKADERFKFIQE 676
               +AD+R  ++ +
Sbjct: 644 ---KRADDRKNWLAQ 655


>gi|190350975|dbj|BAB13754.2| type II DNA topoisomerase [Pichia guilliermondii]
          Length = 782

 Score =  337 bits (865), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 143/637 (22%), Positives = 258/637 (40%), Gaps = 46/637 (7%)

Query: 72  KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKST 129
             L+ +F E++ NA D  I       I+V++D  N  ++V+++G+GIP+E H K      
Sbjct: 13  PGLYKIFDEILVNAADNKIRDPSMRNIKVNIDAENNTISVMNDGKGIPIEIHKK-EKIYI 71

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR--QNTIFSQKFSRG 187
            E+I   L     +D+   +++GG +G G  + N  S E  +  A    + ++ Q ++  
Sbjct: 72  PELIFGNLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFVLETADLNTSQVYKQTWTNN 131

Query: 188 IPLSPLEKKEK-VRNKRGTRITFRPDPKIFGDKA--GFDAARLLKMTQSKAYLSGRVKTC 244
           +      K  K    K  T++TF+PD   F  +       + L +               
Sbjct: 132 MANLTKPKITKLKSKKEYTKVTFKPDLSKFHMEMLDDDILSVLRRRVYDLCGTVKDCNIY 191

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
            +  K    +      E +      ++      E  +   S I               E 
Sbjct: 192 LNDKKLSI-RNFKSYVEMYVNAIRERSPDPVAPEGETRNYSTIVH------EVFNDRWEV 244

Query: 305 AIAWCEENPEITSYCNTILTDEGGTHESGLRVA-LTRGIKKYAELTQNKRAISIISDDLM 363
           A A  + +    S+ N+I T  GGTH   +    +T+ I    +  + K+ ++I   ++ 
Sbjct: 245 AFAVSDGSFNQVSFVNSIATTSGGTHVKYVSDQIITKLIDALTKKEKGKKKLNIKPQEVR 304

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
            +    ++  I  P F  QTK +L +      V      P +  ++ +   A  L   + 
Sbjct: 305 NNMFVFINCLIENPAFTSQTKEQLTTR-----VAQFGGKPSEKIVISDQFIAKILKTSIA 359

Query: 424 ERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTE-----LFIVEGDSAGGSA 478
           ++    +   + +E+++    RK R+  ++     N A   E     L + EGDSA   A
Sbjct: 360 DKIRTIVNANEDKEMSKADGSRKSRIKNQVKLVDANKAGTKEGYKCTLILTEGDSAMPLA 419

Query: 479 KQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED--- 532
                   R      PLRGK+LNV  A  E++  N +I  + Q +G + + +Y  E+   
Sbjct: 420 VAGLTVVGRDYYGCFPLRGKLLNVREASIEQVSKNAEINSIKQIMGLQHKKRYTPENIKS 479

Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRIT---QGT-K 587
           LRY  ++IMTD D DG+HI  L++ F       L+E    L     P+ ++T   +G  +
Sbjct: 480 LRYGHIMIMTDQDQDGSHIKGLIINFLETSFPGLLEIPGFLLEFITPIVKVTITGRGNHR 539

Query: 588 SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINK 647
            +  ++    +K  E        K +   FKGLG  L S+ +E     ++       +  
Sbjct: 540 VIPFYNMPEFEKWRETEGTTC--KWKHKYFKGLGTSLESEGREYFAALDRHMKSFHALQD 597

Query: 648 DLNSLKDTQDSINKLMGTKADERFKFIQ--ERASFID 682
                +    + +K    KADER  ++Q     + +D
Sbjct: 598 G--DSQYIDMAFSK---KKADERKDWLQAFRPGTHLD 629


>gi|19909655|dbj|BAB87023.1| DNA gyrase subunit B [Vibrio gazogenes]
          Length = 463

 Score =  337 bits (865), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 178/474 (37%), Positives = 271/474 (57%), Gaps = 17/474 (3%)

Query: 72  KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLE 131
             LHH+  EV+DN++DE +AGY   I V++  +  ++V D+GRGIP E H +  N S  E
Sbjct: 2   TGLHHMVFEVVDNSIDEALAGYCKDIIVTIHEDNSVSVSDDGRGIPTELHEE-ENVSAAE 60

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           +I+T LHAGGKFD+++Y++SGGLHGVGISVVNALS+++ +T+ R   I++Q +  G+P S
Sbjct: 61  VIMTVLHAGGKFDDNSYKVSGGLHGVGISVVNALSEKVALTIYRSGHIYTQTYHHGVPQS 120

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
           PL          GT + F P  + F +   F    L K  +  ++L+  V      +++ 
Sbjct: 121 PLASVGDTEK-SGTLVRFWPSSETFTN-IEFHYEILAKRLRELSFLNSGVSIKLIDERDS 178

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
                  +++ F + GG++ ++     N++ I   +F    E++     TVE A+ W + 
Sbjct: 179 -------KQDHFRYEGGIQEFVSHLNRNKTPIHDRVFHFNQERED--GITVEVAMQWNDS 229

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVG 368
               I  + N I   +GGTH +G R ALTR +  + +      K   S   DD       
Sbjct: 230 FQESIFCFTNNIPQRDGGTHMAGFRAALTRTLNTFMDKEGFSKKEKTSTSGDDAREGLTA 289

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSE 427
           ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++NP EA  +   +I+    
Sbjct: 290 VISVKVPDPKFSSQTKDKLVSSEVKSAVETAMGEKLSEFLIENPNEAKIVCSKIIDAARA 349

Query: 428 ERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
               R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQ
Sbjct: 350 REAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQ 409

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
           A+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 410 AILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIII 463


>gi|9971333|dbj|BAB12473.1| DNA gyrase B subunit [Cellulophaga lytica]
 gi|9971339|dbj|BAB12476.1| DNA gyrase B subunit [Cellulophaga lytica]
          Length = 474

 Score =  337 bits (865), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 190/483 (39%), Positives = 275/483 (56%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALS+ L  TV R+  I+ Q++ RG  L P++   +     
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSNNLKATVYREGKIWEQEYERGKALYPVKSIGETEE-T 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF PD  IF     ++   L    +  AYL+  V    +  +   EK      E F
Sbjct: 60  GTIVTFYPDDTIFTQTTEYNYETLSNRMRELAYLNKGVTISITDKRVKDEKG-EFLSEVF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTI 322
           Y   GLK +++    NR  +  ++ + + EK G     VE A+ +     E    Y N I
Sbjct: 119 YSEEGLKEFIKFLDGNREQLIRDVVSMEGEKNGIP---VEVAMVYNTSYSENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLSGFRRGLTSTLKKYADASGMLDKLKFEIQGDDFREGLTAIVSVKVAEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + +    V  A+ +   +YL +NP +A  +++ VI  ++ R    K RE+  
Sbjct: 236 GQTKTKLGNREVSSAVSQAVSEMLTNYLEENPDDAKVIVQKVILAAQARHAATKAREMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKL+DCS+  A   E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV
Sbjct: 296 RKTVMSIGGLPGKLSDCSEQDATKCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASL 554
             A   K+  N++I ++  ALG    ++        E LRY KV+IM DADVDG+HI +L
Sbjct: 356 EKAMQHKVFENEEIKNIYTALGVTIGTEEDSKALNLEKLRYHKVVIMCDADVDGSHIETL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +LIE  H+++ +PPL+ + +GTK  YA +++ + +I E F     G + I
Sbjct: 416 ILTFFFRFMRELIEGGHVYIATPPLYLVKKGTKKRYAWNDKERDEIAESF----NGSVGI 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|9971329|dbj|BAB12471.1| DNA gyrase B subunit [Cellulophaga lytica]
          Length = 474

 Score =  337 bits (865), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 189/483 (39%), Positives = 275/483 (56%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALS+ L  TV R+  I+ Q++ RG  L P++   +     
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSNSLKATVYREGKIWEQEYERGKALYPVKSIGETEE-T 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF PD  IF     ++   L    +  AYL+  V    +  +   EK      E F
Sbjct: 60  GTIVTFYPDDTIFTQTTEYNYETLSNRMRELAYLNKGVTISITDKRVKDEKG-EFLSEVF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTI 322
           Y   GLK +++    NR  +  E+ + + EK G     VE A+ +     E    Y N I
Sbjct: 119 YSEEGLKEFIKFLDGNREQLIREVVSMEGEKNGIP---VEVAMVYNTSYSENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLSGFRRGLTSTLKKYADASGMLDKLKFEIQGDDFREGLTAIVSVKVAEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + +    V  A+ +   +YL +NP +A  +++ VI  ++ R    K RE+  
Sbjct: 236 GQTKTKLGNREVSSAVSQAVSEMLTNYLEENPDDAKVIVQKVILAAQARHAATKAREMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKL+DCS+  A   E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV
Sbjct: 296 RKTVMSIGGLPGKLSDCSEQDATKCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASL 554
             A   K+  N++I ++  ALG    ++        + LRY KV+IM DADVDG+HI +L
Sbjct: 356 EKAMQHKVFENEEIKNIYTALGVTIGTEEDSKALNLDKLRYHKVVIMCDADVDGSHIETL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +LIE  H+++ +PPL+ + +GTK  YA +++ + +I + F     G + I
Sbjct: 416 ILTFFFRFMRELIEGGHVYIATPPLYLVKKGTKKRYAWNDKERDEIADSF----NGSVGI 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|13517055|dbj|BAB40410.1| DNA gyrase B subunit [Cytophaga sp. MBIC01481]
          Length = 474

 Score =  337 bits (865), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 185/483 (38%), Positives = 281/483 (58%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALS  LH  V ++  ++ Q++ +G PL P++   +  +  
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSVHLHAKVYKKGQVWEQEYEKGKPLYPVKSTGETDD-N 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF+PDP+IF +   F    L K  +  A+L+  +K      +   EK      + F
Sbjct: 60  GTVVTFKPDPEIFKEVTVFSYDTLAKRLRELAFLNKGIKISLIDKRNKDEKG-EFISDNF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTI 322
           +   GLK +++   E R  I  ++ + + EK       VE A+ + +   E    Y N I
Sbjct: 119 HSEEGLKEFIRFLDETRVPIIGDVISMEGEKNEIP---VEVAMIYNDSYNENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLSGFRRGLTTTLKKYADASGMLDKLKFEISGDDFREGLTAIVSVKVAEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + +    V  A+ +  + YL +NP +A  +++ VI  ++ R   +K RE+  
Sbjct: 236 GQTKTKLGNREVTSAVSQAVSEMLEAYLEENPNDAKTIVQKVILAAQARHAAKKAREMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV
Sbjct: 296 RKTVMSGGGLPGKLSDCSEQDPEQCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASL 554
             A   K+  N++I ++  ALG    ++   +      LRY K++IM DADVDG+HIA+L
Sbjct: 356 EKAMQHKVFENEEIRNIYTALGVTIGTEEDSKALNLSKLRYHKIVIMCDADVDGSHIATL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +LIE  H+++ +PPL+ I +G+K  YA +E+ + +I  E+     G + +
Sbjct: 416 ILTFFFRYMRELIEAGHVYIATPPLYLIKKGSKKRYAWNEKERDEITNEYA----GGVAV 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|9971337|dbj|BAB12475.1| DNA gyrase B subunit [Cellulophaga lytica]
          Length = 474

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 189/483 (39%), Positives = 275/483 (56%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALS+ L  TV R+  I+ Q++ RG  L P++   +     
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSNSLKATVYREGKIWEQEYERGKALYPVKSIGETEE-T 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF PD  IF     ++   L    +  AYL+  V    +  +   EK      E F
Sbjct: 60  GTIVTFYPDDTIFTQTTEYNYETLSNRMRELAYLNKGVTISITDKRVKDEKG-EFLSEIF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTI 322
           Y   GLK +++    NR  +  E+ + + EK G     VE A+ +     E    Y N I
Sbjct: 119 YSEEGLKEFIKFLDGNREQLIREVVSMEGEKNGIP---VEVAMVYNTSYSENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLSGFRRGLTSTLKKYADASGMLDKLKFEIQGDDFREGLTAIVSVKVAEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + +    V  A+ +   +YL +NP +A  +++ VI  ++ R    K RE+  
Sbjct: 236 GQTKTKLGNREVSSAVSQAVSEMLTNYLEENPDDAKVIVQKVILAAQARHAATKAREMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKL+DCS+  A   E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV
Sbjct: 296 RKTVMSIGGLPGKLSDCSEQDATKCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASL 554
             A   K+  N++I ++  ALG    ++        + LRY KV+IM DADVDG+HI +L
Sbjct: 356 EKAMQHKVFENEEIKNIYTALGVTIGTEEDSKALNLDKLRYHKVVIMCDADVDGSHIETL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +LIE  H+++ +PPL+ + +GTK  YA +++ + +I + F     G + I
Sbjct: 416 ILTFFFRFMRELIEGGHVYIATPPLYLVKKGTKKRYAWNDKERDEIADSF----NGSVGI 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|10281020|dbj|BAB13751.1| type II DNA topoisomerase [Candida dubliniensis]
          Length = 782

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 138/633 (21%), Positives = 246/633 (38%), Gaps = 48/633 (7%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPN 126
           T    L+ +F E++ NA D  I       I V +D  N  + V+++G+GIPVE H K  N
Sbjct: 10  TIVPGLYKIFDEILVNAADNKIRDPSMKNIRVKIDAENNIIEVMNDGKGIPVEMHTK-EN 68

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN--TIFSQKF 184
               E+I   L     +D++  +++GG +G G  + N  S +  V  A  N   ++ Q +
Sbjct: 69  MYIPELIFGNLLTSSNYDDNEKKVTGGRNGFGAKLCNIFSTQFEVETADLNMGKLYKQSW 128

Query: 185 SRGIPLSPLEKKEK-VRNKRGTRITFRPDPKIFGDKA--GFDAARLLKMTQSKAYLSGRV 241
           +  +      K       K  T+ITFRPD   F          + L +            
Sbjct: 129 TNNMSNVSKPKITTLKTKKEYTKITFRPDLSKFDMDCLDNDLLSVLRRRVYDLCGTVKNC 188

Query: 242 KTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
               +      EK       + Y    +K   +   E      +         +      
Sbjct: 189 NIYLN------EKRLNISSFKSYVEMYVKAIKERSPEPEPQDGTIKNFTTIVHE-VFNDR 241

Query: 302 VEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKK-YAELTQNKRAISIISD 360
            E A A  + +    S+ N+I T  GGTH   +   +   + +  ++  + K+ + I   
Sbjct: 242 WEVAFAVSDGSFNQVSFVNSIATTSGGTHVKYVSDQIINKLVETLSKKEKGKKKLMIKPQ 301

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           ++  +    ++  I  P F  QTK +L +  +Q   ++        ++  + +    L  
Sbjct: 302 EVRDNMFLFINCLIENPAFTSQTKEQLTTKVSQFGGKD-------KFVANDNLINRILKT 354

Query: 421 WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS-----QNIAHGTELFIVEGDSAG 475
            ++E+        + + + +    RK R+ G++             H   L + EG SA 
Sbjct: 355 SIVEKIRAIANANEDKALQKADGSRKSRIKGQVNLVDANRAGTKDGHNCTLILTEGLSAM 414

Query: 476 GSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
             A    +   R      PLRGK+LNV  A +++I  N +I  L Q +G + +  Y  E+
Sbjct: 415 NLAVAGLSVVGRDYYGCFPLRGKLLNVREASADQIAKNAEINSLKQIIGLQHKKVYTAEN 474

Query: 533 ---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQ---- 584
              LRY  ++IMTD D DG+HI  L++ F       L++    L     P+ ++T     
Sbjct: 475 IKSLRYGHIMIMTDQDQDGSHIKGLIINFLETSFPGLLDIPGFLLEFITPIVKVTVRARG 534

Query: 585 --GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLR 642
             G + +  +     +   +   K  +       +KGLG     + +E     ++  L R
Sbjct: 535 AGGKRVIPFYTMPEFEHWRDTEGKQCR--WTQKYYKGLGTSTPMEAREYFTALDRH-LKR 591

Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675
                          + +K    KADER +++Q
Sbjct: 592 FH-ALQGEDKNYIDLAFSK---KKADERKEWLQ 620


>gi|19909763|dbj|BAB87077.1| DNA gyrase subunit B [Rhodomicrobium vannielii]
          Length = 469

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 193/479 (40%), Positives = 275/479 (57%), Gaps = 16/479 (3%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DNA+DE + GYA+ + V+L+ +G +TV DNGRGIP E HP+   
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALGGYADYVSVTLNADGSVTVEDNGRGIPTEIHPQ-EG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALS  L +T+ R        F+ 
Sbjct: 60  VSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSTRLELTIWRGGHEHFMAFAD 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G+P+ PL+      ++RGTR+TF P    F     FD A L    +  A+L+  V    +
Sbjct: 120 GVPVEPLKIVGAAPDRRGTRVTFMPSAATF-TMVDFDYATLEFRLRELAFLNSGVYIRLT 178

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +        P K EF + GGLK +++     R+ +       ++E+ G     VE A+
Sbjct: 179 DLR-----GVEPVKSEFKYEGGLKAFVEYLDRARTPLFPVPVFVRSERDGV---AVEAAL 230

Query: 307 AWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W +   E    + N I   +GGTH +G R ALTR I  YA  T    K  + +  DD  
Sbjct: 231 WWNDGYHENVLCFTNNIPQRDGGTHLAGFRAALTRTINTYAASTGVAKKEKVQLTGDDAR 290

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                +LSV + +P+F+ QTK KLVS + +  VE+ + +    +  ++P+E   +L  V 
Sbjct: 291 EGLTCVLSVKVADPKFSSQTKDKLVSSEVRPAVESTMTETLGTWFEEHPVEGKLILLKVA 350

Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           E +  R   RK RE+ R+   +    LPGKLADC +     +E+F+VEGDSAGGSAKQ R
Sbjct: 351 EAAAAREAARKARELTRRKGVLDVANLPGKLADCQERDPSKSEVFLVEGDSAGGSAKQGR 410

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVII 540
           +RSNQAVLPLRGKILNV  A  +K+ ++Q+I  L+ ALG        +   LRY ++II
Sbjct: 411 DRSNQAVLPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGRDDFDLSKLRYHRIII 469


>gi|257838318|gb|ACV71149.1| gyrase B [Bacteroides uniformis]
          Length = 458

 Score =  337 bits (864), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 186/460 (40%), Positives = 269/460 (58%), Gaps = 11/460 (2%)

Query: 77  LFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTT 136
           L  EV+DN+ DE +AGY + IEV+++ +  +TV DNGRGIPV+ H K   KS LE+++T 
Sbjct: 1   LVYEVVDNSFDEALAGYCDHIEVTINEDNSITVQDNGRGIPVDYHEK-EKKSALEVVMTV 59

Query: 137 LHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK 196
           LHAGGKFD  +Y++SGGLHGVG+S VNALS  +   V R   I+ Q++S G PL  +++ 
Sbjct: 60  LHAGGKFDKGSYKVSGGLHGVGVSCVNALSTHMTTQVFRNGKIYQQEYSCGHPLYSVKEV 119

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
               +  GTR  F PD  IF +   ++   L    +  AYL+  +K   +  +   E+  
Sbjct: 120 G-TTDITGTRQQFWPDGTIFTETV-YNYDILATRMRELAYLNAGIKISLTDLRVKDEEGN 177

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
             + E FY   GLK +++    +R    +++    TEK+GT    VE AI +       +
Sbjct: 178 AKK-EIFYSEEGLKEFVRYVDSSREHFMNDVIYINTEKQGTP---VEVAIMYNTSYNENV 233

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVF 373
            SY N I T EGGTH +G R ALTR +KKYAE  +   K  + I  DD       ++S+ 
Sbjct: 234 HSYVNNINTIEGGTHLAGFRRALTRTLKKYAEDNKMLEKAKVEIAGDDFREGLTAVISIK 293

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + EP+F GQTKTKL + +    V+ A+ +   +YL ++P EA  +++ VI  ++ R+  R
Sbjct: 294 VAEPQFEGQTKTKLGNNEVMGAVDQAVGEALTYYLEEHPKEAKLIVDKVILAAQARIAAR 353

Query: 434 KQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           K RE  ++ + +    +PGKLADCS       ELF+VEGDSAGGSAKQ RNR+ QA+LPL
Sbjct: 354 KARESVQRKSPMSGGGMPGKLADCSSKDPEECELFLVEGDSAGGSAKQGRNRAFQAILPL 413

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           RGKILNV  A   K   + ++ +++QALG R      +  
Sbjct: 414 RGKILNVEKAMWHKAFESDEVNNIIQALGIRFGVDGEDSK 453


>gi|13517009|dbj|BAB40387.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04447]
          Length = 474

 Score =  337 bits (863), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 183/483 (37%), Positives = 285/483 (59%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALSD LH TV R+  ++ Q++ RG PL P++   +  + R
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDHLHATVHREGKVWEQEYERGKPLYPVKATGET-DFR 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF+PD  IF     ++   L    +  AYL+  +    +  +   +  G    E+F
Sbjct: 60  GTVVTFKPDTTIFQQTTEYNYDTLASRMRELAYLNKGITITLTDMR-HKDDDGNYVSEKF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           +   GLK +++    +R+ I   + + + EK       VE A+ + +     + SY N I
Sbjct: 119 HSEEGLKEFVKFLDASRNPIIGTVISMEGEKNNIP---VEVAMIYNDSYAENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLSGFRRGLTSTLKKYADSSGMLDKLKFEISGDDFREGLTAIVSVKVAEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +    V  A+ +  ++YL +NP +A  ++E VI  ++ R   +K RE+ +
Sbjct: 236 GQTKTKLGNREVTSAVSQAVSEMLENYLEENPSDAKTIVEKVILAAQARHAAKKAREMVQ 295

Query: 441 KTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           + + +    LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV
Sbjct: 296 RKSVMSIGGLPGKLSDCSEQDPALCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASL 554
             A   K+  N++I ++  ALG    ++   +      LRY K++IM DADVDG+HI++L
Sbjct: 356 EKAMHHKVFENEEIKNIFTALGVTIGTEEDSKALNLSKLRYHKIVIMCDADVDGSHISTL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +LIE  H+++ +PPL+ + +G K  YA +++ + +I+ EF ++ K    I
Sbjct: 416 ILTFFFRYMKELIEAGHIYIAAPPLYLVKKGAKKQYAWNDDQRDQIVREFGENSK----I 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|9971371|dbj|BAB12492.1| DNA gyrase B subunit [Flectobacillus major]
          Length = 477

 Score =  337 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 184/483 (38%), Positives = 279/483 (57%), Gaps = 15/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  TY++SGGLHGVG+S VNALS +L VTV R+  IF Q++  G+P  P+++   V ++ 
Sbjct: 1   DKDTYKVSGGLHGVGVSCVNALSTDLKVTVHREGKIFQQEYKIGVPQYPVKEIG-VTDRT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F+PD  IF     +    +    +  ++L+  +K      +++ E    P+ ++F
Sbjct: 60  GTTVHFKPDDTIFSVT-EYKYETVAGRLRELSFLNAGIKIFLKDLRDLDENG-APKSDDF 117

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTI 322
           +  GGL+ ++      R  +  E    + +K G     V+ A+ +     E   SY N I
Sbjct: 118 FSEGGLREFVTYLDSTREKLIPEPIYMEGDKNGVP---VQVAMMYNTSYSENVVSYVNNI 174

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH +G R ALTR +K YA+ +   +K  I I  DD       ++SV + EP+F 
Sbjct: 175 NTIEGGTHVAGFRGALTRTLKNYADKSGALDKLKIDIAGDDFREGLTAVISVKVAEPQFE 234

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + +    V  A+ D  + +L ++P EA +++  VI  ++ R   RK RE+  
Sbjct: 235 GQTKTKLGNGEVSGAVSAAMSDMLETWLEEHPKEARQIVAKVILAAQARHAARKAREMVQ 294

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKLADCS +   G EL++VEGDSAGG+AKQ RNR+ QA+LPLRGKILNV
Sbjct: 295 RKTVLGGNSLPGKLADCSDSDPVGCELYLVEGDSAGGTAKQGRNRAYQAILPLRGKILNV 354

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-----RSQYREEDLRYEKVIIMTDADVDGAHIASL 554
             A   KI  N++I +++ ALG              E LRY K+IIMTDADVDG+HI +L
Sbjct: 355 EKAQEYKIYENEEIKNMITALGVSFGKDGDERALNIEKLRYHKIIIMTDADVDGSHIRTL 414

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M DL++  ++++  PPL+ + +G +S Y   E+ +   + E     +  + +
Sbjct: 415 ILTFFFRYMKDLVDNGYIYIAQPPLYLVKRGQQSRYCWTEQQRDVAVRELGGDKESAVGV 474

Query: 615 SRF 617
            R+
Sbjct: 475 QRY 477


>gi|228860935|ref|YP_002853958.1| gp60plus39 DNA topoisomerase subunit [Enterobacteria phage RB51]
 gi|227438609|gb|ACP30921.1| gp60plus39 DNA topoisomerase subunit [Enterobacteria phage RB51]
          Length = 605

 Score =  337 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 142/657 (21%), Positives = 235/657 (35%), Gaps = 80/657 (12%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTD-----------------EKALHHLFSEVIDNAMDE 88
            + I+IL  +E ++ R GMYIG +                     L  L  E+IDN++DE
Sbjct: 3   KNEIKILSDIEHIKKRSGMYIGSSANEMHERFLFGKWESVQYVPGLVKLIDEIIDNSVDE 62

Query: 89  VIA---GYANLIEVSLDGNGFLTVVDNGRGIPVENH--PKFPNKSTLEIILTTLHAGGKF 143
            I     +AN I V++  N  +TV DNGRGIP      P            T   AGG F
Sbjct: 63  GIRTKFKFANKINVTI-KNNQVTVEDNGRGIPQAMVKTPTGEEIPGPVAAWTIPKAGGNF 121

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
            +    ++GG++GVG S+ N  S                + S G+     E        +
Sbjct: 122 GDDKERVTGGMNGVGSSLTNIFSVMFVGETGDGQNNIVVRCSNGMENKSWETIPG--KWK 179

Query: 204 GTRITFRPDPKIFGDKA--GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           GTR+TF PD   F             L   Q+ A +   ++  ++  K            
Sbjct: 180 GTRVTFIPDFMSFETNELSQVYLDITLDRLQTLAVVYPDIQFTFNGKKV----------- 228

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
                G  K Y +   E+  +   E  +               A+    +     +Y N 
Sbjct: 229 ----QGNFKKYARQYDEHAIVQEQENCS--------------IAVGRSPDGFRQLTYVNN 270

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVF-IREPEFA 380
           I T  GG H   +   +           + K  I +    +      ++ V  ++   F 
Sbjct: 271 IHTKNGGHHIDCVMDDICE---DLIPQIKRKFKIDVTKARVKECLTIVMFVRDMKNMRFD 327

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
            QTK +L S   +     +        + +  +    +L  +IE +  R    ++    +
Sbjct: 328 SQTKERLTSPFGEIR---SHIQLDAKKISRAILNNEAILMPIIEAALARKLAAEKAAETK 384

Query: 441 KTAIRKLRLPG-KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
                        +          T LF+ EGDSA G     R++      PLRGK+LN 
Sbjct: 385 AAKKASKAKVHKHIKANLCGKDADTTLFLTEGDSAIGYLIDVRDKELHGGYPLRGKVLNS 444

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
                  +  N+++ D+    G     +   E+L Y  + IMTDAD DG       L  F
Sbjct: 445 WGMSYADMLKNKELFDICAITGLVLGEKA--ENLNYRNIAIMTDADHDGLGSIYPSLLGF 502

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
           +    +L EQ  +  +  P+     G K  + +     +   +   KH      I   KG
Sbjct: 503 FSNWPELFEQGRIRFVKTPVIIAQVGKKQEWFYTVAEYESAKDALPKH-----SIRYIKG 557

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           LG +  S+ +E   +          +   +   ++ ++    LMG  AD R +++ +
Sbjct: 558 LGSLEKSEYREMIQNP---------VYDVVKLPENWKELFEMLMGDNADLRKEWMSQ 605


>gi|19909595|dbj|BAB86993.1| DNA gyrase subunit B [Halomonas aquamarina]
          Length = 458

 Score =  337 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 177/470 (37%), Positives = 263/470 (55%), Gaps = 18/470 (3%)

Query: 72  KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLE 131
             LHH+  E++DN++DE +AG+ + I V +  +  +TV DNGRGIP E H +    S  E
Sbjct: 1   TGLHHMVFELVDNSIDEALAGHCSEIRVVIHADESVTVSDNGRGIPTELH-EGEGVSAAE 59

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           +I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+EL +T+ RQ  +F Q +  G+P +
Sbjct: 60  VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELRLTIWRQGEVFEQIYHHGVPQA 119

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
           PL    K     GTR+ FRP P  F +   F    L K  +  ++L+  V      ++  
Sbjct: 120 PLSVVGKTEK-SGTRVHFRPSPATFAN-IEFHYDILAKRLRELSFLNSGVAIRLMDERSG 177

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
            E       E F++ GGLK ++    +N+++++           G     VE A+ W + 
Sbjct: 178 KE-------ELFHYEGGLKAFVDHLNKNKTVLNPVFHFNAGRDDGV---EVEVAMQWSDA 227

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVG 368
               I  Y N I   +GGTH    R ALTR +  Y E      K  ++   DD       
Sbjct: 228 FTENIFCYTNNIPQRDGGTHLGRFRAALTRTLNHYIEAEGLLKKAKVNTSGDDAREGLTA 287

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSE 427
           I+SV + +P+F+ QTK KLVS + +  VE  +   F  YL++ P EA  ++  +++    
Sbjct: 288 IISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGRLFADYLIEKPNEAKAIVNKMLDAARA 347

Query: 428 ERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
               R+ +    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ R+R  Q
Sbjct: 348 REAARKARDMTRRKGALDIAGLPGKLADCQEKDPSQSELYLVEGDSAGGSAKQGRDRRTQ 407

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYE 536
           A+LPL+GKILNV  A  +K+ ++ ++  L+ ALGC   R ++  + LRY 
Sbjct: 408 AILPLKGKILNVEKARFDKMLSSAEVGTLITALGCGIGREEFNPDKLRYH 457


>gi|10281016|dbj|BAB13749.1| type II DNA topoisomerase [Candida tropicalis]
          Length = 782

 Score =  337 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 136/640 (21%), Positives = 248/640 (38%), Gaps = 62/640 (9%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPN 126
           T    L+ +F E++ NA D  I       I+V +D  N  + V+++G+GIPVE H K  N
Sbjct: 10  TIVPGLYKIFDEILVNAADNKIRDPTMKNIKVKIDPENNTIEVMNDGKGIPVEMHTK-EN 68

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR--QNTIFSQKF 184
               E+I   L     +D++  +++GG +G G  + N  S +  V  A      ++ Q +
Sbjct: 69  MYIPELIFGNLLTSSNYDDNQKKVTGGRNGFGAKLCNIFSTQFEVETADLNTGKLYKQVW 128

Query: 185 SRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK--AGFDAARLLKMTQSKAYLSGRV 241
           +  +      K   +   K  T+ITF+PD   F          A L +            
Sbjct: 129 TDNMTNVAKPKITTLRTKKEYTKITFKPDLAKFDMDSLDEDLLAVLRRRVYDLCGTVKNC 188

Query: 242 KTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG----- 296
               +  +                    K+Y++  ++     S E  T     K      
Sbjct: 189 NIYLNDKR--------------LSISSFKSYVEMYVKAIRERSPEPLTEDGTSKNFTTIV 234

Query: 297 --THRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKK-YAELTQNKR 353
                   E A A  +      S+ N+I T  GGTH   +   +   + +  ++  + K+
Sbjct: 235 HEVFNERWEVAFAVSDGTFNQVSFVNSIATTAGGTHVKYVSDQIINKLVETLSKKEKGKK 294

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
            + I   ++  +    ++  I  P F  QTK +L +  +Q   +         ++  + +
Sbjct: 295 KLMIKPQEVRDNMFLFINCLIENPAFTSQTKEQLTTKVSQFGGKQ-------KFVANDNL 347

Query: 414 EATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIA-----HGTELFI 468
               L   ++++        + + + +    RK R+ G+++    N A     H   L +
Sbjct: 348 INRILKTSIVDKIRAIANANEDKALQKADGSRKSRIKGQVSLVDANKAGTKLGHNCTLIL 407

Query: 469 VEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
            EG SA   A    +   R      PLRGK+LNV  A +++I  N +I  L Q +G + +
Sbjct: 408 TEGLSALNLAVAGLSVVGRDYYGCFPLRGKLLNVREASADQISKNAEINALKQIIGLQHK 467

Query: 526 SQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFR 581
             Y  E+   LRY  ++IMTD D DG+HI  L++ F       L+E    L     P+ +
Sbjct: 468 KHYTAENIKQLRYGHIMIMTDQDQDGSHIKGLIINFLETSFPGLLEIPGFLLEFITPIVK 527

Query: 582 ITQG------TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
           +T         + +  +     +   +   +  + +     +KGLG     + +E     
Sbjct: 528 VTIKTRGSGNNRVIPFYTMPEFEAWRD--GEGSQCRWTHKYYKGLGTSTPMEAREYFTAL 585

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675
           ++       +            + +K    KADER  ++Q
Sbjct: 586 DRHLKKFHALQG--EDASYIDLAFSK---KKADERKDWLQ 620


>gi|13517059|dbj|BAB40412.1| DNA gyrase B subunit [Cytophaga sp. MBIC01483]
          Length = 475

 Score =  337 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 178/483 (36%), Positives = 273/483 (56%), Gaps = 17/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALS+ L  TV ++  ++ Q++ RG  L P++      +  
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSNHLKATVYKEGKVWEQEYERGKALYPVKAIGDT-DFT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF PD  IF     ++   L    +  AYL+  +    +  +   E     E E F
Sbjct: 60  GTEVTFTPDDSIFQQTTEYNYDTLASRLRELAYLNKGITVTLTDKRNKKEDG-EFENETF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           +   GL  +++    NR+ I   + + + EK G     VE A+ + +     + SY N I
Sbjct: 119 HSNEGLSEFVRFLDGNRNPIIGNVISMEGEKNGVP---VEVAMIYNDSYAENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH +G R  LT  +KK+A+ +    K    I  DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLAGFRRGLTGSLKKFADASGMLDKLKFDIAGDDFREGLTAIISVKVSEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + +    V  A+ +  + Y+ +NP +A  +++ VI  ++ R   +K RE+  
Sbjct: 236 GQTKTKLGNREVTSAVSQAVAEMIEIYMEENPNDAKTIVQKVILAAQARHAAKKAREMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R  QA+LPLRGKILNV
Sbjct: 296 RKTVMSIGGLPGKLSDCSETDPAVCEVFLVEGDSAGGTAKQGRDREFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASL 554
             A   K+  N++I ++  ALG    ++   +      LRY KV+IM DADVDG+HI++L
Sbjct: 356 EKAMQHKVFENEEIKNIFTALGVTIGTEEDSKALNLSKLRYHKVVIMCDADVDGSHISTL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +L+E+  +++ +PPL+ + +G K  YA D++ +  I E     G   + I
Sbjct: 416 ILTFFFRYMRELVEKGFVYIATPPLYLVKKGQKKQYAWDDKERDAIAERL---GTQGVSI 472

Query: 615 SRF 617
            R+
Sbjct: 473 QRY 475


>gi|13517057|dbj|BAB40411.1| DNA gyrase B subunit [Cytophaga sp. MBIC01482]
          Length = 474

 Score =  336 bits (862), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 185/483 (38%), Positives = 278/483 (57%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALSD L  TV R   I+ Q++ RG  + P++      +KR
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDHLKATVYRDGKIWEQEYERGKAMYPVKAIGDT-DKR 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF PD  IF     F    L    +  A+L+  +K   +  +   E+      + F
Sbjct: 60  GTDVTFLPDRSIFTQTTEFSYETLANRLRELAFLNKGIKIILTDKRHKDEEG-NFVTDVF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
               GLK +++   + R  I +++ + + EK G     VE A+ + +     + SY N I
Sbjct: 119 QSEEGLKEFIRFLDDTRQPIIADVISMEGEKNGIP---VEVAMIYNDSYAENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH +G R  LT  +KKYA+ +    K    I  DD       I+SV ++EP+F 
Sbjct: 176 NTHEGGTHLAGFRRGLTSTLKKYADASGLLDKLKFDIAGDDFREGLTAIISVKVQEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + +    V  A+    + YL +NP +A  +++ VI  ++ R   RK RE+  
Sbjct: 236 GQTKTKLGNREVTSAVSQAVSQMLEAYLEENPNDAKTIVQKVILAAQARHAARKAREMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R  QA++PLRGKILNV
Sbjct: 296 RKTVMSGGGLPGKLSDCSETDPTLCEVFLVEGDSAGGTAKQGRDREFQAIMPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASL 554
             A + K+  N++I D+  ALG    ++        E LRY KV+IM DAD+DG+HIA+L
Sbjct: 356 EKAMTHKVFENEEIRDIYTALGVTIGTEEDSKALNLEKLRYHKVVIMCDADIDGSHIATL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M ++IE+ ++++ +PPL+ + +G K  YA  ++ + +I E F     G + I
Sbjct: 416 ILTFFFRYMREMIEKGYIYIATPPLYLVKKGAKKRYAWSDKERDEIAESFG----GGVNI 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|257838320|gb|ACV71150.1| gyrase B [Bacteroides vulgatus]
          Length = 457

 Score =  336 bits (862), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 185/452 (40%), Positives = 269/452 (59%), Gaps = 11/452 (2%)

Query: 77  LFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTT 136
           L  EV+DN++DE +AGY + IEV+++ +  +TV DNGRGIPV+ H K   KS LE+++T 
Sbjct: 1   LVYEVVDNSIDEALAGYCDHIEVTINEDNSITVQDNGRGIPVDFHEK-EKKSALEVVMTV 59

Query: 137 LHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK 196
           LHAGGKFD  +Y++SGGLHGVG+S VNALS  +   V R   I+ Q++S G PL  +++ 
Sbjct: 60  LHAGGKFDKGSYKVSGGLHGVGVSCVNALSTHMTTQVFRGGKIYQQEYSCGHPLYSVKEV 119

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
               +  GT+ TF PD  IF     +    L    +  AYL+  +    +  + I E+ G
Sbjct: 120 G-TADITGTKQTFWPDDTIFTV-TEYKFDILQARMRELAYLNKGITISLTD-RRIKEEXG 176

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
             +KE F+   G+K +++    N   + +++    TEK  T    +E AI +       +
Sbjct: 177 SFKKEIFHSDEGVKEFVRFLNRNNEALINDVIYLNTEKNNTP---IECAIMYNTGYRESL 233

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
            SY N I T EGGTHE+G R ALTR +KKYAE T+   K  + I  +D     + ++SV 
Sbjct: 234 HSYVNNINTIEGGTHEAGFRSALTRVLKKYAEDTKALEKAKVEISGEDFREGLIAVISVK 293

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + EP+F GQTKTKL + +    V  A+ +   +YL ++P EA ++++ VI  +  R+  R
Sbjct: 294 VAEPQFEGQTKTKLGNSEVSGAVNQAVGEALTYYLEEHPKEAKQIVDKVILAATARIAAR 353

Query: 434 KQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           K RE  ++ + +    LPGKLADCS       ELF+VEGDSAGGSAKQ R+R+ QA+LPL
Sbjct: 354 KARESVQRKSPMGGGGLPGKLADCSSRNPEECELFLVEGDSAGGSAKQGRSRAFQAILPL 413

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           RGKILNV  A   K   + ++ +++ ALG R 
Sbjct: 414 RGKILNVEKAMWHKAFESDEVNNIITALGVRF 445


>gi|13517021|dbj|BAB40393.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04455]
          Length = 474

 Score =  336 bits (861), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 183/483 (37%), Positives = 285/483 (59%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALSD LH TV R+  ++ Q++ RG PL P++   +  + R
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDHLHATVHREGKVWEQEYERGKPLYPVKATGET-DFR 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF+PD  IF     ++   L    +  AYL+  +    +  +   +  G    E+F
Sbjct: 60  GTVVTFKPDTTIFQQTTEYNYDTLASRMRELAYLNKGITITLTDMR-HKDDDGNYVSEKF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           +   GLK +++    +R+ I   + + + EK       VE A+ + +     + SY N I
Sbjct: 119 HSEEGLKEFVKFLDASRNPIIGTVISMEGEKNSIP---VEVAMIYNDSYAENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLSGFRRGLTSTLKKYADSSGMLDKLKFEISGDDFREGLTAIVSVKVAEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +    V  A+ +  ++YL +NP +A  ++E VI  ++ R   +K RE+ +
Sbjct: 236 GQTKTKLGNREVTSAVSQAVSEMLENYLEENPSDAKTIVEKVILAAQARHAAKKAREMVQ 295

Query: 441 KTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           + + +    LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV
Sbjct: 296 RKSVMSIGGLPGKLSDCSEQDPALCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASL 554
             A   K+  N++I ++  ALG    ++   +      LRY K++IM DADVDG+HI++L
Sbjct: 356 EKAMHHKVFENEEIKNIFTALGVTIGTEEDSKALNLSKLRYHKIVIMCDADVDGSHISTL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +LIE  H+++ +PPL+ + +G K  YA +++ + +I+ EF ++ K    I
Sbjct: 416 ILTFFFRYMKELIEAGHIYIAAPPLYLVKKGAKKQYAWNDDQRDQIVREFGENSK----I 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|13517063|dbj|BAB40414.1| DNA gyrase B subunit [Cytophaga sp. MBIC01485]
          Length = 474

 Score =  336 bits (861), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 183/483 (37%), Positives = 278/483 (57%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALSD L  TV R   I+ Q++ RG  + P++      +KR
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDHLKATVYRDGKIWEQEYERGKAMYPVKAIGDT-DKR 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF PD  IF     F    L    +  A+L+  +K   +  +   E+      + F
Sbjct: 60  GTDVTFLPDRSIFTQTTEFSYETLANRLRELAFLNKGIKIILTDKRHKDEEG-NFVTDVF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
               GLK +++   + R  I +++ + + EK G     VE A+ + +     + SY N I
Sbjct: 119 QSEEGLKEFIRFLDDTRQPIIADVISMEGEKNGIP---VEVAMIYNDSYAENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH +G R  LT  +KKYA+ +    K    I  DD       I+SV ++EP+F 
Sbjct: 176 NTHEGGTHLAGFRRGLTSTLKKYADASGLLDKLKFDIAGDDFREGLTAIISVKVQEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + +    V  A+    + YL +NP +A  +++ VI  ++ R   RK RE+  
Sbjct: 236 GQTKTKLGNREVTSAVSQAVSQMLEAYLEENPNDAKTIVQKVILAAQARHAARKAREMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R  QA++PLRGKILNV
Sbjct: 296 RKTVMSGGGLPGKLSDCSETDPTLCEVFLVEGDSAGGTAKQGRDREFQAIMPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASL 554
             A + K+  N++I ++  ALG    ++        E LRY KV+IM DAD+DG+HIA+L
Sbjct: 356 EKAMTHKVFENEEIRNIYTALGVTIGTEEDSKALNLEKLRYHKVVIMCDADIDGSHIATL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M ++IE+ ++++ +PPL+ + +G K  YA  ++ + +I E F +     + I
Sbjct: 416 ILTFFFRYMREMIEKGYIYIATPPLYLVKKGAKKRYAWSDKERDEIAESFGR----GVNI 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|32170802|gb|AAP57678.1| putative DNA gyrase subunit B [Sphingomonas elodea]
          Length = 396

 Score =  336 bits (861), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 215/395 (54%), Positives = 276/395 (69%), Gaps = 7/395 (1%)

Query: 297 THRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI 355
             +G VEWA+AW        + YCNTI T +GGTHE GLR AL R ++ +A+L  NK+A 
Sbjct: 4   ESQGRVEWAVAWPLWSEGSFSWYCNTIPTPDGGTHEQGLRQALVRSLRSFADLVHNKKAK 63

Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415
            +  DD++  +  +LSVFIREP+F  QTK +L S +A   VE A+RD FDHYL  N    
Sbjct: 64  DLSPDDVVTGSEVMLSVFIREPQFQSQTKDRLTSPEATALVEKAVRDHFDHYLTDNMERG 123

Query: 416 TKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLPGKLADCSQNIAHGTELFIVEGDS 473
             LL +V+ER ++RLRR+++REV RK+A   RKLRLPGKL DCS +   GTELFIVEGDS
Sbjct: 124 KALLGYVLERMDDRLRRKQEREVKRKSATTGRKLRLPGKLTDCSADSPEGTELFIVEGDS 183

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAKQAR+R  QA+LP+RGKILNVASA S KI  NQ+I DL+QALGC TR       L
Sbjct: 184 AGGSAKQARDRKTQAILPIRGKILNVASATSAKILANQEIADLIQALGCGTRKDCDASQL 243

Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHD 593
           RYE++IIMTDADVDGAHIA+LL+TFF+QEM DL+ + HL+L  PPL+R+T G+KS+YA D
Sbjct: 244 RYERIIIMTDADVDGAHIATLLMTFFFQEMPDLVRKGHLYLAQPPLYRLTVGSKSLYARD 303

Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
           + H+ +I +   K    K+E+SRFKGLGEM  +QLKET MD   R LLRV + ++     
Sbjct: 304 DAHRIEIEKTAFK--GKKVEVSRFKGLGEMNPNQLKETTMDPKTRGLLRVTLPQEYEERA 361

Query: 654 DTQDSINKLMGTKADERFKFIQERASFIDD--VGT 686
             +D +++LMG     RF FIQE A+ +DD  +  
Sbjct: 362 GVKDLVDRLMGNNPAHRFAFIQENAARLDDEVIDA 396


>gi|118468752|ref|YP_884870.1| DNA topoisomerase IV subunit B [Mycobacterium smegmatis str. MC2
           155]
 gi|302595978|sp|A0QPN2|Y457_MYCS2 RecName: Full=DNA gyrase subunit B-like protein MSMEG_0457
 gi|118170039|gb|ABK70935.1| DNA topoisomerase IV subunit B [Mycobacterium smegmatis str. MC2
           155]
          Length = 677

 Score =  336 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 164/680 (24%), Positives = 266/680 (39%), Gaps = 51/680 (7%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDE-VIAGYA-NLIEVS 100
           +Y A+ I  L+ ++  R+RP + +G      L+    E++DNA++E    G+  + + ++
Sbjct: 2   SYTAADITELDDVQHTRLRPAVNLG---LDVLNTALREIVDNAIEEVADPGHGGSTVTIT 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD--NSTYEISGGLHGVG 158
           L  +G ++V D+GRG+PV+  P    K+ +   L T  AGGKF           GL+G+G
Sbjct: 59  LHADGSVSVADDGRGLPVDTDP-TTGKNGIVKTLGTARAGGKFSAHKDATSTGAGLNGIG 117

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIP-------------------LSPLEKKEKV 199
            +    +S    VTV R    F Q F RG P                           + 
Sbjct: 118 AAAAVFISARTDVTVRRDGKTFLQSFGRGYPGVFEGKEFDPEAPFTRNDTQKLRGVSNRK 177

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            +  GT +    DP I  D        LL    + A +S  V      +    E+     
Sbjct: 178 PDLHGTEVRILFDPAIAPDSTLDIGEVLL-RAHAAARMSPGVHLVVVDEGWPGEEVPPAV 236

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTG----KTEKKGTHRGTVEWAIAWCEENPEI 315
            E F  P G  T L            E+            G       W++      P  
Sbjct: 237 LEPFSGPWGTDTLLDLMCTAAGTPLPEVRAVVEGRGEYTTGRGPTPFRWSLTAGPAEPAT 296

Query: 316 TS-YCNTILTDEGGTHESGLRVALTRGIKKYAELTQN----KRAISIISDDLMISAVGIL 370
            + +CNT+ T  GG+H +     L+  + + A   ++    K        D        +
Sbjct: 297 VAAFCNTVRTPGGGSHLTAAIKGLSEALAERASRMRDLGLAKNEEGPEPQDFAAVTALAV 356

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ--NPIEATKLLEWVIERSEE 428
                +  +  Q KT + S      +   +      +     N    T   +  +E +  
Sbjct: 357 DTRAPDVAWDSQAKTAVSSRSLNLAMAPDVARSVTIWAANPANADTVTLWSKLALESARA 416

Query: 429 RLRRRKQREVNRKT------AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           R      +   R               P  L         G ELF+ EGDSA G+ K AR
Sbjct: 417 RRSAEGAKARARAASKAKGLGTNLSLPPKLLPSRESGRGSGAELFLCEGDSALGTIKAAR 476

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           + + QA  PL+GK  NV      K R   +   + + LGC  R     E  RY++++  +
Sbjct: 477 DATFQAAFPLKGKPPNVYGFPLNKARAKDEFDAIERILGCGVRDHCDPELCRYDRILFAS 536

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILE 602
           DAD DG +I S L++ F      L+E   +++  PPLF +  G + +Y  DE  +   + 
Sbjct: 537 DADPDGGNINSSLISMFLDFYRPLVEAGMVYVTMPPLFVVKAGDERIYCQDESERDAAVA 596

Query: 603 EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKL 662
           + K     ++E+ R KGLGEM A     T +D  +RT++RV  ++    L  T      L
Sbjct: 597 QLKASSNRRVEVQRNKGLGEMDADDFWNTVLDPQRRTVIRVRPDESEKKLHHT------L 650

Query: 663 MGTKADERFKFIQERASFID 682
            G   + R  ++ + A+ +D
Sbjct: 651 FGGPPEGRRTWMADVAARVD 670


>gi|66814704|ref|XP_641531.1| DNA topoisomerase II [Dictyostelium discoideum AX4]
 gi|166210410|sp|P90520|TOP2M_DICDI RecName: Full=DNA topoisomerase 2, mitochondrial; Short=DNA
           topoisomerase II; Flags: Precursor
 gi|60469558|gb|EAL67548.1| DNA topoisomerase II [Dictyostelium discoideum AX4]
          Length = 1284

 Score =  336 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 132/638 (20%), Positives = 247/638 (38%), Gaps = 44/638 (6%)

Query: 62  PGMYIGG---TDEKALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN-GFLTVVDNGRGI 116
           P  YI     T    L  ++ E++ NA D        + I+V ++ N   ++++++G+GI
Sbjct: 158 PLTYIHPIKATYIPGLLKIYDEILVNAADNKKRDSKMSFIKVEINPNENSISIMNDGKGI 217

Query: 117 PVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQ 176
           PV  H +  N   +E+++  L +G  F++S  ++ GG +G G  + N  S E  V    +
Sbjct: 218 PVVMH-QTENCYVVEMVMGNLMSGSNFNDSELKVVGGRNGFGAKLTNIFSKEFTVETVDK 276

Query: 177 ----NTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD---KAGFDAARLLK 229
                       + G    P+           T+ITF+PD + F             + +
Sbjct: 277 SSGKKYFQRWSNNMGDRSEPIITPIGEGESDYTKITFKPDLEKFKIKSLWDDNILQLMER 336

Query: 230 MTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFT 289
                A  +  +    +  +         +  E +     K       E+      E   
Sbjct: 337 RLYDIAGCNTELMVTLNGKRLNYNFQSYVKLYEHHLNNSTK------REDNEEQYREESF 390

Query: 290 GKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
              E     +  +  +           S+ N+I T +GGTH + L   + R    Y    
Sbjct: 391 EFGEISPRWKIGIGLSETGQ---FTQVSFVNSINTVKGGTHVNFLADQIVR----YVGEK 443

Query: 350 QNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
             K+   + I   ++       ++  +  P F  Q+K  L +          + +     
Sbjct: 444 LKKKHSDLEIRPMNIKHHLALFVNCLVDNPSFDSQSKETLTTKPMLFGSTPEIPESLLAQ 503

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
            V+N     ++  W + + +  L        ++ T I+ +             +    L 
Sbjct: 504 FVKNSKIIERVAGWALMKQKADLIHSTSGRQSKTTLIKSISKLDDANWAGGLKSKECTLI 563

Query: 468 IVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           I EGDSA   A    +   R++  V PLRGK+LNV    S+++ +N++I +L   LG   
Sbjct: 564 ITEGDSAKSLALAGLSVVGRNSYGVFPLRGKLLNVRDVASKQLLSNEEINNLTTILGLSH 623

Query: 525 RSQYR----EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
           ++ Y      EDLRY +V+IM D D DG+HI  L++ F +    +L+++  L     P+ 
Sbjct: 624 KNSYDTDESMEDLRYGRVMIMADQDHDGSHIKGLVMNFIHYFWPNLLKRGFLVEFVTPII 683

Query: 581 RITQ-GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           + T+  T+       +  +K  E        +  I  +KGLG   +++ KE   + +K  
Sbjct: 684 KATKSSTQKKSFFTIKDYEKWRETISSDQLKQYTIKYYKGLGTSTSAEAKEYFSNLDKHV 743

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQE 676
           +  +          +  D I        +  R ++I+E
Sbjct: 744 IKFIW-------GDEADDLIKMAFAKDLSSLRQRWIKE 774


>gi|13517061|dbj|BAB40413.1| DNA gyrase B subunit [Cytophaga sp. MBIC01484]
          Length = 474

 Score =  336 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 178/483 (36%), Positives = 267/483 (55%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALSD L  TV R   I+ Q++ RG  L P+++  +    R
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDHLTATVFRDGVIWQQEYERGKALYPVKRIGETEE-R 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF PD  IF     +    L    +  ++L+  V    +  ++  EK      E F
Sbjct: 60  GTEVTFHPDNTIFTQTIEYSYETLANRMRELSFLNKGVTISITDKRQKDEKG-EFVSETF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTI 322
           +   GLK +++    NR  +   +   + EK       VE A+ +     E    Y N I
Sbjct: 119 FSNEGLKEFVKFLDGNRESLIQGVIAMEGEKNDIP---VEVAMIYNTSYTENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH  G R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLPGFRRGLTSTLKKYADASGMLDKLKFEIQGDDFREGLTAIVSVKVSEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +    V  A+ +    YL ++P +A  +++ VI  ++ R    K RE+ +
Sbjct: 236 GQTKTKLGNREVSAAVSQAVSEMLTDYLEEHPDDAKTIVQKVILAAQARHAASKAREMVQ 295

Query: 441 KTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +   +    LPGKL+DCS+      E+F+VEGDSAGG+AK  R+R+ QA+LPLRGKILNV
Sbjct: 296 RKNVMSGGGLPGKLSDCSEQDPEKCEIFLVEGDSAGGTAKMGRDRNFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASL 554
             A   K+  N++I ++  ALG    ++        E LRY KV+IM DADVDG+HI +L
Sbjct: 356 EKAMQHKVFENEEIKNMYTALGVTIGTEEDSKALNLEKLRYHKVVIMCDADVDGSHIETL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +L+EQ H+++ +PPL+ + +G K  YA  ++ + +I + +     G + I
Sbjct: 416 ILTFFFRYMRELVEQGHIYIATPPLYLVKKGQKKQYAWSDKERDEIADSYS----GGVSI 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|9971363|dbj|BAB12488.1| DNA gyrase B subunit [Tenacibaculum ovolyticum]
 gi|9971365|dbj|BAB12489.1| DNA gyrase B subunit [Tenacibaculum ovolyticum]
          Length = 474

 Score =  336 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 175/483 (36%), Positives = 271/483 (56%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALSD L  TV ++  ++ Q++ +G  L P++   +  +  
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDHLTATVHKEGKVWQQEYEKGKALYPVKTIGET-DFT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF PD  IF     ++   L    +  AYL+  +    +  +   ++     +E F
Sbjct: 60  GTIVTFLPDKSIFAQTTEYNYDTLSARLRELAYLNKGITITLTDKRNTDDEG-NYIQETF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTI 322
               GL  +++     R  +++ + + + EK G     VE A+ +     E    Y N I
Sbjct: 119 RSTEGLPEFIKYLDSTREQLTANVISMEGEKNGIP---VEVAMVYNTSYSENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KKYA+ +   + +      DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLSGFRRGLTHTLKKYADESGLLKNVKFEIAGDDFREGLTAIISVKVAEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + +    V  A+ +    YL +NP +A  +++ VI  ++ R   RK RE+  
Sbjct: 236 GQTKTKLGNREVTSAVSQAVSEMLTDYLEENPNDAKTIVQKVILAAQARHAARKAREMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV
Sbjct: 296 RKTVMSIGGLPGKLSDCSETDPAQCEIFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR-----YEKVIIMTDADVDGAHIASL 554
             A   K+  N++I ++  ALG    ++     L      Y KV+IM DADVDG+HIA+L
Sbjct: 356 EKAMQHKVFENEEIKNMFTALGVSIGTEEDPRALNLSKIRYHKVVIMCDADVDGSHIATL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +++EQ ++++ +PPL+ + +G K  YA D+  +  I ++      G + I
Sbjct: 416 ILTFFFRYMREMVEQGYIYIATPPLYLVKKGQKREYAWDDNQRDLIAQKLG----GNVNI 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|13517065|dbj|BAB40415.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04487]
          Length = 474

 Score =  336 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 179/483 (37%), Positives = 274/483 (56%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALS  L  TV R+  I+ Q++ +G  + P++      + R
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSTHLKATVYREGKIWEQEYEKGKAMYPVKGIGDTDD-R 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF PDP IF     ++   L    +  AYL+  +    +  ++  +K      E F
Sbjct: 60  GTAVTFLPDPSIFQTTTEYNYDTLASRMRELAYLNKGITITLTDKRQKDDKG-EFVSETF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           +   GLK +++    NR  I  E+ + + EK       VE A+ + +     + SY N I
Sbjct: 119 HSEEGLKEFVRFLDGNRQPIIGEVISMEGEKNDIP---VEVAMIYNDSYAENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH +G R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLAGFRRGLTSSLKKYADASGMLDKLKFEITGDDFREGLTAIISVKVAEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + +    V  A+ +  + YL ++P +A  +++ VI  ++ R   +K RE+  
Sbjct: 236 GQTKTKLGNREVTSAVSQAVSEMVEIYLEEHPDDAKTIVQKVILAAQARHAAKKAREMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKLADCS+      E+F+VEGDSAGG+AK  R+R+ QA+LPLRGKILNV
Sbjct: 296 RKTVMSIGGLPGKLADCSETDPEACEVFLVEGDSAGGTAKMGRDRNFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASL 554
             A   K+  N++I ++  ALG    ++   +      LRY+K++IM DADVDG+HIA+L
Sbjct: 356 EKAMQHKVFENEEIKNIFTALGVTIGTEEDSKALNLSKLRYKKIVIMCDADVDGSHIATL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +L+E  H+++ +PPL+ + +G K  YA  E+ + +   +      G   +
Sbjct: 416 ILTFFFRYMRELVEGGHVYIATPPLYLLKKGKKMRYAWSEKERDEYNAQMG----GSASV 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|9971351|dbj|BAB12482.1| DNA gyrase B subunit [Zobellia uliginosa]
          Length = 474

 Score =  336 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 183/483 (37%), Positives = 269/483 (55%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+SVVNALSD L  TV R   I+ Q++ RG  L P++   +    R
Sbjct: 1   DKDSYKVSGGLHGVGVSVVNALSDRLKATVYRDGKIWEQEYERGKALYPVKSIGETEE-R 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF PD +IF     +    L    +  ++L+  V    +  ++  EK      E F
Sbjct: 60  GTMVTFHPDDQIFQQTIEYSYETLANRMRELSFLNKGVTISITDRRQKDEKG-EFLSETF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTI 322
           Y   GLK +++    NR  +   + + + EK       VE A+ +     E    Y N I
Sbjct: 119 YSDEGLKEFVKFLDGNREPLIQSVISMEGEKNDIP---VEVAMIYNTSYTENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KKYA+ +    K    +  DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLSGFRRGLTTTLKKYADASGMLEKLKFEVQGDDFREGLTAIVSVKVAEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + +    V  A+ +    YL ++P +A  +++ VI  ++ R    K RE+  
Sbjct: 236 GQTKTKLGNREVSSAVSQAVSEMLSDYLEEHPDDAKVIVQKVILAAQARHAATKAREMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKL+DCS+      E+F+VEGDSAGG+AK  R+R  QA+LPLRGKILNV
Sbjct: 296 RKTVMSIGGLPGKLSDCSEQDPAQCEVFLVEGDSAGGTAKMGRDRKFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASL 554
             A   K+  N++I ++  ALG    ++        E LRY KV+IM DADVDG+HI +L
Sbjct: 356 EKAMQHKVFENEEIKNIYTALGVTIGTEDDSKALNLEKLRYHKVVIMCDADVDGSHIETL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +LIE  H+++ +PPL+ + +G+K  YA  ++ + +I   +     G + I
Sbjct: 416 ILTFFFRYMRELIEGGHVYIATPPLYLVKKGSKKRYAWSDKERDEIAHSY----NGSVSI 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|10281014|dbj|BAB13748.1| type II DNA topoisomerase [Issatchenkia orientalis]
          Length = 804

 Score =  336 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 129/652 (19%), Positives = 233/652 (35%), Gaps = 54/652 (8%)

Query: 72  KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKST 129
             L  +F E++ NA D  I       I+V ++     ++V ++G+GIP+E H K  N   
Sbjct: 13  PGLFKIFDEILVNAADNKIRDPSMKRIDVIINEEENVISVKNDGKGIPIEIHDK-ENIYI 71

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR--QNTIFSQKFSRG 187
            E+I   L     +D+   +++GG +G G  + N  S E  V  A       ++Q +   
Sbjct: 72  PELIFGNLLTSSNYDDDQKKVTGGRNGYGAKLCNIFSTEFTVHTADMSHGKEYTQVWRNN 131

Query: 188 IPLSPLEK---KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244
           +      K    +K                              +           ++  
Sbjct: 132 MSEVGKPKILNFKKKNEFTEIIFKPDLSKFGMEKLDHDILGVFKRRVYDLCGSVRGIRVT 191

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK--------- 295
            + +      +    +         K                   G++E           
Sbjct: 192 LNGELLKINNFKQYVELYVKAINKSKEERPHIPVKIETEDGTPLNGESEANTETSSTPEP 251

Query: 296 -----------GTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKK 344
                             E A    + +    S+ N+I T  GGTH   +   L   I +
Sbjct: 252 SLNENLPTIVHEIINDRWEIAFCISDGSFNQVSFVNSIATTLGGTHVDDVANMLCGKITE 311

Query: 345 YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF 404
             +    K  I      +       ++  +  P F  QTK  L +  ++   +       
Sbjct: 312 QIKRKNKKAIIK--PFQIKSKMFLFINCLVENPAFTFQTKEYLTTQLSKFGGKRLELPEK 369

Query: 405 DHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGT 464
               + N     ++L+ V   +++ L++    + +R T   KL    K         +  
Sbjct: 370 FIKKILNTGIIDEVLDIVQANADKALKKTDGAKKSRITGYPKLEDANK---AGTREGYKC 426

Query: 465 ELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
            L + EGDSA   A Q      R+     PLRGK+LNV  A +++I  N  I  + Q +G
Sbjct: 427 TLILTEGDSAKSLAVQGLAVVGRNYYGCFPLRGKVLNVREASTDQIMKNGAIQAIKQIMG 486

Query: 522 CRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK-HLFLISP 577
            + +  Y  +D   LRY +++IM D D DG+HI  LL+ F       L+E    L     
Sbjct: 487 LQHKKHYGPDDIKSLRYGRIMIMADQDHDGSHIKGLLINFLEASFPGLLEIPNFLIEFIT 546

Query: 578 PLFRIT-----QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           P+ +IT        K++  +     ++  E          +   +KGLG   A +++E  
Sbjct: 547 PIVKITIMSGPNRRKTIPFYSMPEYEQWRETEGSTC--SYKQKYYKGLGTSSAQEMREYF 604

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ--ERASFID 682
              +K  L R +  +D         + +K    KAD+R ++++  +  +++D
Sbjct: 605 TQLDKH-LKRFDALRD-EDKSSIDLAFSK---KKADDRKEWLRNYQPGTYLD 651


>gi|10039343|dbj|BAB13324.1| DNA gyrase B subunit [Tenacibaculum amylolyticum]
          Length = 474

 Score =  336 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 179/483 (37%), Positives = 271/483 (56%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALSD L  TV R   I+ Q++ RG  L P++   +  +  
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDHLKATVHRDGKIWQQEYERGKTLYPVKTTGET-DIT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF PD  IF     ++   L    +  AYL+  +    +  +   ++      E F
Sbjct: 60  GTEVTFLPDRSIFQQTVEYNYDTLATRMRELAYLNKGITITLTDKRNKDDEG-NDISETF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           +   GL  +++     R+ +   + + + EK G     VE A+ + +     + SY N I
Sbjct: 119 HSTEGLSEFVKYLDSTRTSVIQHVISMEGEKNGIP---VEVAMIYNDSYAENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KKYA+ +   + +      DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLSGFRRGLTHTLKKYADESGLLKNVKFEISGDDFREGLTAIVSVKVAEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + +    V  A+ +    YL +NP +A  +++ VI  ++ R   RK RE+  
Sbjct: 236 GQTKTKLGNREVTSAVSQAVSEMLTDYLEENPNDAKTIVQKVILAAQARHAARKAREMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV
Sbjct: 296 RKTVMSIGGLPGKLSDCSETDPAQCEIFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASL 554
             A   K+  N++I ++  ALG    ++          LRY KV+IM DADVDG+HIA+L
Sbjct: 356 EKAMQHKVFENEEIKNMFTALGITIGTEEDPRALNLSKLRYHKVVIMCDADVDGSHIATL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +++EQ ++++ +PPL+ + +G K  YA D+  +  I ++      G   I
Sbjct: 416 ILTFFFRYMREMVEQGYIYIATPPLYLVKKGQKREYAWDDNQRDLINQKMG----GGASI 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|86438844|emb|CAJ44361.1| putative DNA topoisomerase II [Malus x domestica]
          Length = 1467

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 121/696 (17%), Positives = 237/696 (34%), Gaps = 109/696 (15%)

Query: 16  SQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGG------- 68
              +S         P       ++  + Y   S      LE + +RP  YIG        
Sbjct: 8   PLQTSNNANIDHPAPTDGGGKGKTIEEMYQKKS-----QLEHILLRPDTYIGSIEKHTSN 62

Query: 69  --------------TDEKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDN 112
                         T    L+ +F E++ NA D        + ++V++D     ++V +N
Sbjct: 63  LWVYQNGEMVNRSITYVPGLYKIFDEILVNAADNKQRDPSMDSVKVTIDVEQNSISVYNN 122

Query: 113 GRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVT 172
           G G+PVE H +       E+I   L     +D++  + +GG +G G  + N  S E  + 
Sbjct: 123 GAGVPVEIHQE-ERVYVPELIFGHLLTSSNYDDTVKKTTGGRNGYGAKLTNIFSTEFIIE 181

Query: 173 VARQ--NTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKA--GFDAARL 227
            A       + Q F+  +    +    K +  +  TR+T++PD   F          A +
Sbjct: 182 TADGMRQKKYKQVFTNNMGNKTVPVITKCKESENWTRVTYKPDLSKFNMTHLEDDVVALM 241

Query: 228 LKMTQSKA-YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSE 286
            K     A  L   VK   +  +   + +           G  +     +L  +      
Sbjct: 242 QKRVIDLAGCLGKTVKVELNGTRVPVKSFLDYVDLYLQSAGKSRDAPLLRLTEK------ 295

Query: 287 IFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYA 346
                           E  ++  +   +  S+ N I T +GGTH + +   +T  +    
Sbjct: 296 -----------VNDRWEICVSLSDGQFQQVSFVNGIATIKGGTHVNYVTDQITNHVMNIV 344

Query: 347 ELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
                    ++ + ++       ++  I  P F  QTK  L         +  L   F  
Sbjct: 345 NKKNK--NANLKAHNVKNYLWVFVNALIDNPAFDSQTKETLTIRPNSFGSKCELTPAFL- 401

Query: 407 YLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS-QNIAHGTE 465
               N +  + +++ ++  +  +  +  ++    KT         + A+ +    +    
Sbjct: 402 ----NKVAKSGIVDSLLSWANFKQNKDLKKTDGTKTERVHNINKLEDANYAGGKNSEKCT 457

Query: 466 LFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           L + EGDSA   A        R +  V PLRGK+LNV  A                    
Sbjct: 458 LILTEGDSAKALAMAGLAVVGRDHYGVFPLRGKLLNVREAS------------------- 498

Query: 523 RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK-HLFLISPPLFR 581
                                 D DG+HI  LL+ F +     L++    L     P+ +
Sbjct: 499 -------------------ATQDHDGSHIKGLLINFIHSFWPSLLKIPSFLVEFITPIVK 539

Query: 582 IT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
            T +   ++  +     +   E  + +      I  +KGLG   + + ++   +  +   
Sbjct: 540 ATHKNGNTLAFYSMPEYEAWKESLRGNA-SGWSIKYYKGLGTSTSKEGRDYFQNLVQHKK 598

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
             + I++     +  + + +K    K +ER  ++++
Sbjct: 599 DFIWIDE--RDGEAIELAFSK---KKIEERKNWLRQ 629


>gi|9971359|dbj|BAB12486.1| DNA gyrase B subunit [Tenacibaculum maritimum]
          Length = 474

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 179/483 (37%), Positives = 273/483 (56%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALSD L  TV ++  I+ Q++ RG  L P++   +  +  
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDHLTATVHKEGKIWQQEYERGKTLYPVKTIGET-DFT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF PD  IF     ++   L    +  AYL+  +    +  +   ++      E F
Sbjct: 60  GTIVTFLPDKSIFQQTTEYNYDTLATRLRELAYLNKGITITLTDKRNKDDEG-NDIMETF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTI 322
           +   GL  +++     R  +++++ + + EK G     VE A+ +     E    Y N I
Sbjct: 119 HSTEGLPEFVKYLDNTREQLTADVISMEGEKNGIP---VEVAMIYNTSYSENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KKYAE +   + +      DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLSGFRRGLTGTLKKYAENSGLLKNVKFEIAGDDFREGLTAIISVKVGEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + +    V  A+ +    YL +NP +A  +++ VI  ++ R   RK RE+  
Sbjct: 236 GQTKTKLGNREVTSAVSQAVSEMLTDYLEENPDDAKTIVQKVILAAQARHAARKAREMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV
Sbjct: 296 RKTVMSIGGLPGKLSDCSETDPASCEIFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASL 554
             A   K+  N++I ++  ALG    ++          LRY KV+IM DADVDG+HIA+L
Sbjct: 356 EKAMQHKVFENEEIKNMFTALGVSIGTEEDPRALNLSKLRYHKVVIMCDADVDGSHIATL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +++EQ ++++ +PPL+ + +G K  YA D+  +  I ++      G + I
Sbjct: 416 ILTFFFRYMKEMVEQGYIYIATPPLYLVKKGQKKEYAWDDNQRDLIAQKMG----GSVNI 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|9971379|dbj|BAB12496.1| DNA gyrase B subunit [Microscilla marina]
          Length = 478

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 184/484 (38%), Positives = 271/484 (55%), Gaps = 16/484 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  TY++SGGLHGVG+S VNALS  L  TV R+  IF Q++ +G P + +E   +  +K 
Sbjct: 1   DKDTYQVSGGLHGVGVSCVNALSTLLRATVHREGKIFQQEYKQGDPQTEVEVIGE-SDKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT I F PD  IF     +    + +  +  +YL+  ++      +   E       E+F
Sbjct: 60  GTVIHFVPDATIFTAI-EYKYETISQRLRELSYLNKGIRLTMVDHRVKGEDG-KALTEDF 117

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTI 322
              GGL  +++   E R     E    + EK G     V+ A  +     E   SY N I
Sbjct: 118 LSEGGLTEFVRYLDETRQSFLPEPIYVEGEKSGVP---VQVAFTYNHSYSENVYSYVNNI 174

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R ALTR +K YA+      K  + +  DD       ++SV + EP+F 
Sbjct: 175 NTIEGGTHISGFRRALTRTLKSYADKEGMLEKAKVDVTGDDFREGLTAVISVKVAEPQFE 234

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +    V+NA  +    +L +NP +A  +++ VI  ++ R   RK RE+ +
Sbjct: 235 GQTKTKLGNSEVMGVVDNATSEALSKFLEENPKQAKSIIQKVILAAQARHAARKAREMVQ 294

Query: 441 KTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +   +    LPGKLADCS+      EL++VEGDSAGGSAKQ R+R+ QA+LPLRGKILNV
Sbjct: 295 RKNVLSGSGLPGKLADCSEKDPGLCELYLVEGDSAGGSAKQGRDRNTQAILPLRGKILNV 354

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASL 554
             A   KI +N++I +++ ALG              E LRY K+IIMTDADVDG+HI +L
Sbjct: 355 EKAQEYKIYDNEEIKNIITALGVTFGKDDDDKALNMEKLRYHKIIIMTDADVDGSHIRTL 414

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG-KIE 613
           +LTFF++ M DLIE  ++++  PP + + +G K +YA +++ +   ++E   +GK   + 
Sbjct: 415 ILTFFFRYMRDLIESGYVYIALPPFYLVKKGKKELYAWNDDDRDVAIKELAGNGKPESVH 474

Query: 614 ISRF 617
           + R+
Sbjct: 475 VQRY 478


>gi|313768427|ref|YP_004062107.1| hypothetical protein MpV1_224c [Micromonas sp. RCC1109 virus MpV1]
 gi|312599123|gb|ADQ91147.1| hypothetical protein MpV1_224c [Micromonas sp. RCC1109 virus MpV1]
          Length = 1070

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 135/672 (20%), Positives = 251/672 (37%), Gaps = 77/672 (11%)

Query: 47  SSIRILEGLEPVRMRPGMYIGGTD---------------------EKALHHLFSEVIDNA 85
            SI+ L  +E +  RP  Y+G  +                       AL  +F E++ NA
Sbjct: 2   ESIQKLTHIEHILKRPDSYVGPVEQGSEPYWILDGSTFTKKNLKYSPALLKIFDEILVNA 61

Query: 86  MD-EVI-AGYANLIEVSLDGN-GFLTVVDNGR--GIPVENHPKFPNKSTLEIILTTLHAG 140
           +D   +     + I V++D + G +T+ +NG   GI V+ H K       E++   L   
Sbjct: 62  IDRNSLHPKNVSSISVTIDKDVGSVTIENNGPLGGISVKMHEK-EGLWNPELVFGHLLTS 120

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN--TIFSQKFSRGIPLSPLEKKEK 198
             +D+S   I GG +G G  + N  S +  + +        ++QK+S+ + +    K +K
Sbjct: 121 TNYDDSQKRIVGGRNGYGAKLANIYSSDFSIIIKDHETKQTYTQKWSKNMTVCDPPKIKK 180

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
                 + ++    P+            +  + Q + + +    T     K   E     
Sbjct: 181 HSGST-SSVSITFTPEWKRFGMSKMDDAIYSIFQKRVWDANICTTSNCKVKLNGEILPKQ 239

Query: 259 EKEEF-YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS 317
             E +     G+K       +                           I   E   E  S
Sbjct: 240 NFEAYAKMHEGIKDIASFNGD----------------------RWSVCIGPSENGLEQVS 277

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREP 377
           + N I T +GGTH   +   +  GI          + I +    +  +    +   +  P
Sbjct: 278 FVNGICTTKGGTHIDHVANHIASGIID-----DMAKKIKLKPQQVKNTFTIFVKATLENP 332

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
            F+ Q K++          +      F   +++  I          +  +E  +    R+
Sbjct: 333 TFSSQVKSECTLKAQDFGSKFEPPKNFVKNVLKTGIADELTALSKFKEMKELKKTDGARK 392

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRG 494
                 I  +             +    L + EGDSA   A    +   R +  V PLRG
Sbjct: 393 SK----ITGIPKLDDANKAGTAQSGKCTLIVTEGDSAKTLAVAGLSVVGRDHYGVFPLRG 448

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIAS 553
           K  NV  +   ++ +NQ+  DL + LG +   +Y++  +LRY +++IMTDAD DG+HI  
Sbjct: 449 KCKNVRDSSVAQLTSNQEFNDLKKILGLQQGKEYKDVSELRYGRLMIMTDADNDGSHIKG 508

Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613
           L+L   +     L++   +  +  P+ + T+G+ +   + +   +         GK   +
Sbjct: 509 LILNMIHYFWPSLLKMNFVVSMVTPIIKATKGSDTKSFYTDSAFRTWY----GSGKSGWK 564

Query: 614 ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKF 673
           I  +KGLG   +++ +E      K   L V+ + D  +      + +K    KAD R  +
Sbjct: 565 IKYYKGLGTSTSAEAREYF---KKIQDLTVKFDADTMTDDSIILAFDK---KKADARKAW 618

Query: 674 IQER-ASFIDDV 684
           + E  A   + +
Sbjct: 619 LLESTAKEANQL 630


>gi|13517033|dbj|BAB40399.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04468]
          Length = 474

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 179/483 (37%), Positives = 274/483 (56%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALS  L  TV R+  I+ Q++ +G  + P++      + R
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSTHLKATVYREGKIWEQEYEKGKAMYPVKGIGDTDD-R 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF PDP IF     ++   L    +  AYL+  +    +  ++  +K      E F
Sbjct: 60  GTAVTFLPDPSIFQTTTEYNYDTLASRMRELAYLNKGITITLTDKRQKDDKG-EFVSETF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           +   GLK +++    NR  I  E+ + + EK       VE A+ + +     + SY N I
Sbjct: 119 HSEEGLKEFVRFLDGNRQPIIGEVISMEGEKNDIP---VEVAMIYNDSYAENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH +G R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLAGFRRGLTSSLKKYADASGMLDKLKFEIAGDDFREGLTAIISVKVAEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + +    V  A+ +  + YL ++P +A  +++ VI  ++ R   +K RE+  
Sbjct: 236 GQTKTKLGNREVTSAVSQAVSEMVEIYLEEHPDDAKTIVQKVILAAQARHAAKKAREMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKLADCS+      E+F+VEGDSAGG+AK  R+R+ QA+LPLRGKILNV
Sbjct: 296 RKTVMSIGGLPGKLADCSETDPEACEVFLVEGDSAGGTAKMGRDRNFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASL 554
             A   K+  N++I ++  ALG    ++   +      LRY+K++IM DADVDG+HIA+L
Sbjct: 356 EKAMQHKVFENEEIKNIFTALGVTIGTEEDSKALNLSKLRYKKIVIMCDADVDGSHIATL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +L+E  H+++ +PPL+ + +G K  YA  E+ + +   +      G   +
Sbjct: 416 ILTFFFRYMRELVEGGHVYIATPPLYLLKKGKKMRYAWSEKERDEYNAQMG----GSASV 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|19909663|dbj|BAB87027.1| DNA gyrase subunit B [Erythrobacter sp. N73102]
          Length = 482

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 172/491 (35%), Positives = 280/491 (57%), Gaps = 27/491 (5%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV DNA+DE +AG+ +L+ + L+ +G ++V DNGRGIPV+ H K   
Sbjct: 1   DTDDGSGLHHMVFEVSDNAIDEALAGHCDLVLIELNPDGSVSVEDNGRGIPVDMH-KEEG 59

Query: 127 KSTLEIILTTLHAGGKF----DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
            S  E+I+T LHAGGKF    D++ Y++SGGLHGVG+SVVNALS+ L +T+ R       
Sbjct: 60  VSAAEVIMTQLHAGGKFENTSDDNAYKVSGGLHGVGVSVVNALSEWLELTIWRNGKEHWM 119

Query: 183 KFSRGIPLSPLEKKEKVRN----------KRGTRITFRPDPKIFGDKAGFDAARLLKMTQ 232
           +F  G  ++ LE K               K+GTR+TF+     F +   FD  +L    +
Sbjct: 120 RFEHGDAVNSLEVKGDAPKVDQNPDDDGFKKGTRVTFKASTDTFKNVTEFDFEKLEHRYR 179

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             A+L+  V+      +     +    + + ++ GG+  +++    N+  + S+  +   
Sbjct: 180 ELAFLNSGVRILIRDKR-----HEEVVEHDLFYEGGIAAFVRWLDRNKEALISDPISVSA 234

Query: 293 EKKGT-HRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ- 350
           EK G      +EW  ++      +  + N I   +GGTH +  R ALTR +  YA+    
Sbjct: 235 EKDGIGIDVALEWNDSY---YENVLCFTNNIPQRDGGTHLAAFRAALTRTLNGYADREGL 291

Query: 351 -NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
             K  +S+  +D+      I+SV + +P+F+ QTK KLVS + ++ +E+ + +    +L 
Sbjct: 292 LKKEKVSLSGEDMREGLTAIVSVKLPDPKFSSQTKDKLVSSEVRQPLESLMGEKMTEWLE 351

Query: 410 QNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           +NP +A  +++ +I+ +  R   ++ RE++RK A+    LPGKL+DC +  A   E+F+V
Sbjct: 352 ENPADAKAIIQKIIDAAAAREAAKRAREMSRKGAMSVASLPGKLSDCRERDATKAEIFLV 411

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           EGDSAGGSAK  R+   QA+LPL+GKILNV  A  ++I +++++  L+QA+G   R ++ 
Sbjct: 412 EGDSAGGSAKGGRDSQYQAILPLKGKILNVERARFDRIISSKEVGTLIQAMGTGIRDEFD 471

Query: 530 EEDLRYEKVII 540
            E LRY K++I
Sbjct: 472 LEKLRYHKIVI 482


>gi|1834317|dbj|BAA11510.1| DNA topoisomerase II [Dictyostelium discoideum]
          Length = 1282

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 133/639 (20%), Positives = 249/639 (38%), Gaps = 47/639 (7%)

Query: 62  PGMYIGG---TDEKALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN-GFLTVVDNGRGI 116
           P  YI     T    L  ++ E++ NA D        + I+V ++ N   ++++++G+GI
Sbjct: 158 PLTYIHPIKATYIPGLLKIYDEILVNAADNKKRDSKMSFIKVEINPNENSISIMNDGKGI 217

Query: 117 PVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQ 176
           PV  H +  N   +E+++  L +G  F++S  ++ GG +G G  + N  S E  V    +
Sbjct: 218 PVVMH-QTENCYVVEMVMGNLMSGSNFNDSELKVVGGRNGFGAKLTNIFSKEFTVETVDK 276

Query: 177 ----NTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD---KAGFDAARLLK 229
                       + G    P+           T+ITF+PD + F             + +
Sbjct: 277 SSGKKYFQRWSNNMGDRSEPIITPIGEGESDYTKITFKPDLEKFKIKSLWDDNILQLMER 336

Query: 230 MTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFT 289
                A  +  +    +  +             + F   +K Y      + ++       
Sbjct: 337 RLYDIAGCNTELMVTLNGKRLN-----------YNFQSYVKLYEHHLNNSTNVKIMRHIV 385

Query: 290 GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
               + G      +  I   E       S+ N+I T +GGTH + L   + R    Y   
Sbjct: 386 KNPFEFGEISPRWKIGIGLSETGQFTQVSFVNSINTVKGGTHVNFLADQIVR----YVGE 441

Query: 349 TQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
              K+   + I   ++       ++  +  P F  Q+K  L +          + +    
Sbjct: 442 KLKKKHSDLEIRPMNIKHHLALFVNCLVDNPSFDSQSKETLTTKPMLFGSTPEIPESLLA 501

Query: 407 YLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
             V+N     ++  W + + +  L        ++ T I+ +             +    L
Sbjct: 502 QFVKNSKIIERVAGWALMKQKADLIHSTSGRQSKTTLIKSISKLDDANWAGGLKSKECTL 561

Query: 467 FIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523
            I EGDSA   A    +   R++  V PLRGK+LNV    S+++ +N++I +L   LG  
Sbjct: 562 IITEGDSAKSLALAGLSVVGRNSYGVFPLRGKLLNVRDVASKQLLSNEEINNLTTILGLS 621

Query: 524 TRSQYR----EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
            ++ Y      EDLRY +V+IM D D DG+HI  L++ F +    +L+++  L     P+
Sbjct: 622 HKNSYDTDESMEDLRYGRVMIMADQDHDGSHIKGLVMNFIHYFWPNLLKRGFLVEFVTPI 681

Query: 580 FRITQ-GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
            + T+  T+       +  +K  E        +  I  +KGLG   +++ KE   + +K 
Sbjct: 682 IKATKSSTQKKSFFTIKDYEKWRETISSDQLKQYTIKYYKGLGTSTSAEAKEYFSNLDKH 741

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQE 676
            +  +          +  D I        +  R ++I+E
Sbjct: 742 VIKFIW-------GDEADDLIKMAFAKDLSSLRQRWIKE 773


>gi|71030782|ref|XP_765033.1| DNA topoisomerase II [Theileria parva strain Muguga]
 gi|68351989|gb|EAN32750.1| DNA topoisomerase II, putative [Theileria parva]
          Length = 1378

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 136/692 (19%), Positives = 252/692 (36%), Gaps = 82/692 (11%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----------------------E 71
              ++  + Y          LE + +RP  YIG T+                        
Sbjct: 2   GKAKTVEERYQKK-----TQLEHILLRPDTYIGSTELNNQQMWVFDEEKNRMVYETIDYV 56

Query: 72  KALHHLFSEVIDNAMDEVIAG-------YANLIEVSLDG-NGFLTVVDNGRGIPVENHPK 123
             L+ +F E++ NA D                I+V++D   G + V ++G  IP++ H +
Sbjct: 57  PGLYKIFDELLVNAADVYARQLSDPTLEKMTCIKVTIDRGTGAIVVYNDGEPIPIQIHNE 116

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
                  ++I   L     +D+S   ++GG +G G  + N  S    V V          
Sbjct: 117 H-KMYVPQLIFGELLTSDNYDDSEERVTGGRNGFGAKLANIFSKTFTVVV---------- 165

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
                      K     N   T+   + +  +  D                    G  K 
Sbjct: 166 --GNKKTKKKFKMTWCDNMTKTKSPAQIESYMGPDFVKITFIPDYSRFNLTELDEGTYKV 223

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
                K + +  G    + F     +K        N  L        K  +K       E
Sbjct: 224 L---KKRVYDMAGTLGVKVFLNNERIKVKDFKDYVNLYLPEDATEIVKIYEK---MYRWE 277

Query: 304 WAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLM 363
             I+  E+     S+ N+I T +GGTH S +   L + + K    ++NK  I +  + + 
Sbjct: 278 VVISTSEDGFRQVSFVNSINTIKGGTHVSHVVDPLVQSLTK-KVNSKNKGGIELKPNQIK 336

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                 ++  I  P F  QTK  L +   +   +  + D        N +  +K+ + ++
Sbjct: 337 NHIFVFINCQIVNPSFDSQTKETLTTKIVKFGSKYTMSDKTL-----NQVLKSKIFDNIL 391

Query: 424 ERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHG---TELFIVEGDSAGGSAKQ 480
               E+     ++++       KL    KL D ++          L + EGDSA  S   
Sbjct: 392 SWLHEKTNIELKKKMKVAKGNDKLFGIPKLEDANKAGTRYATECTLILTEGDSAKTSCLA 451

Query: 481 ARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED--LRY 535
             +   R    V PL+GK+LNV  A  +++  N ++ ++++ +G    ++ R++   LRY
Sbjct: 452 GLSVVGRDKYGVFPLKGKLLNVREASYKQLTQNIEVQNILKIMGLDITNKLRQDSSGLRY 511

Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE-QKHLFLISPPLFRITQG--TKSVYAH 592
             ++IMTD D DG+HI  LL+  F+     LI+    +     P+ ++T     +     
Sbjct: 512 GSIMIMTDQDYDGSHIKGLLINMFHNFWPKLIQFNGFIKEFITPIIKVTNKSNNQVHSFF 571

Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652
             E      +           I  +KGLG    ++ KE   + N+  +    ++   +  
Sbjct: 572 TIEDFNNWKQTV---DISNYRIKYYKGLGTSSDNEFKEYFGNLNRHIVEFKYVDTVDDD- 627

Query: 653 KDTQDSINKLMGTKADERFKFIQER--ASFID 682
                + +K    + D+R +++Q     + +D
Sbjct: 628 -SIDLAFSK---KRIDDRKRWMQNYVLGTTVD 655


>gi|284109084|ref|ZP_06386476.1| DNA gyrase, B subunit [Candidatus Poribacteria sp. WGA-A3]
 gi|283829831|gb|EFC34124.1| DNA gyrase, B subunit [Candidatus Poribacteria sp. WGA-A3]
          Length = 457

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 170/465 (36%), Positives = 241/465 (51%), Gaps = 18/465 (3%)

Query: 15  QSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKAL 74
             Q    +   +           +     Y A  IR+LEGLE VR RP MYIG T    L
Sbjct: 7   NPQLLPNESPPAPPFDPPGFPEEEVEQSGYGAEQIRVLEGLEAVRKRPAMYIGSTGADGL 66

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           HHL  EV+DN++DE +AGY   IEVSL+ +G +TV DNGRGIP   HP   NKS  E+ L
Sbjct: 67  HHLVYEVVDNSVDEHMAGYGETIEVSLEIDGSVTVTDNGRGIPTGLHP-TQNKSAAEVAL 125

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKF+   Y +SGGLHGVGISVVNALS+ L + + +   +F Q + RG   + L+
Sbjct: 126 TVLHAGGKFEQGAYTVSGGLHGVGISVVNALSEWLELEIWQDGQVFEQVYHRGTAAASLQ 185

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
                +  RGT+ITF+PD  IF          L +  +  A+L+  +    +  +   E 
Sbjct: 186 VTGVTKK-RGTKITFKPDETIFET-VDCSFDVLAQRLRELAFLNKGLSISLADKRSQKE- 242

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313
                 + F + GG+ +++    E ++ +         EK       +E A+ + +    
Sbjct: 243 ------QVFCYKGGIVSFVDHLNEAKTPLHKP-IFISVEKPDAM---LEVALQYNDGYAE 292

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
            + S+ N I T EGGTH  G + ALTR I  YA       K   S+  DD+      ++S
Sbjct: 293 NLFSFANNINTREGGTHLIGFKAALTRTINSYASANDLLKKDMDSLTGDDVREGLTSVVS 352

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERL 430
           V +R P+F GQTK KL + + +  VE A+ +    Y  +NP  A +++ +          
Sbjct: 353 VKVRAPQFEGQTKAKLGNSEVKGIVEVAVNEGLGTYFEENPAVAKRIIGKAADAARAREA 412

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            R+ +  + RK+A+    LPGKLADCS+     +ELFIVEGDSAG
Sbjct: 413 ARKAKDLIRRKSALDGGSLPGKLADCSEKDPALSELFIVEGDSAG 457


>gi|9971361|dbj|BAB12487.1| DNA gyrase B subunit [Tenacibaculum maritimum]
          Length = 474

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 179/483 (37%), Positives = 272/483 (56%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALSD L  TV ++  I+ Q++ RG  L P++   +  +  
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDHLTATVHKEGKIWQQEYERGKTLYPVKTIGET-DFT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF PD  IF     ++   L    +  AYL+  +    +  +   ++      E F
Sbjct: 60  GTIVTFLPDKSIFQQTTEYNYDTLATRLRELAYLNKGITITLTDKRNKDDEG-NDIMETF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTI 322
           +   GL  +++     R  +++ + + + EK G     VE A+ +     E    Y N I
Sbjct: 119 HSTEGLPEFVKYLDNTREQLTAGVISMEGEKNGIP---VEVAMVYNTSYSENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KKYAE +   + +      DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLSGFRRGLTGTLKKYAENSGLLKNVKFEIAGDDFREGLTAIISVKVGEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + +    V  A+ +    YL +NP +A  +++ VI  ++ R   RK RE+  
Sbjct: 236 GQTKTKLGNREVTSAVSQAVSEMLTDYLEENPDDAKTIVQKVILAAQARHAARKAREMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV
Sbjct: 296 RKTVMSIGGLPGKLSDCSETDPASCEIFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASL 554
             A   K+  N++I ++  ALG    ++          LRY KV+IM DADVDG+HIA+L
Sbjct: 356 EKAMQHKVFENEEIKNMFTALGVSIGTEEDPRALNLSKLRYHKVVIMCDADVDGSHIATL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +++EQ ++++ +PPL+ + +G K  YA D+  +  I ++      G + I
Sbjct: 416 ILTFFFRYMKEMVEQGYIYIATPPLYLVKKGQKKEYAWDDNQRDLIAQKMG----GSVNI 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|257838316|gb|ACV71148.1| gyrase B [Bacteroides sartorii]
          Length = 457

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 185/452 (40%), Positives = 268/452 (59%), Gaps = 11/452 (2%)

Query: 77  LFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTT 136
           L  EV+DN++DE +AGY + IEV+++ +  +TV DNGRGIPV+ H K   KS LE+++T 
Sbjct: 1   LVYEVVDNSIDEALAGYCDHIEVTINEDNSITVQDNGRGIPVDFHEK-EKKSALEVVMTV 59

Query: 137 LHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK 196
           LHAGGKFD  +Y++SGGLHGVG+S VNALS  +   V R   I+ Q++S G PL  +++ 
Sbjct: 60  LHAGGKFDKGSYKVSGGLHGVGVSCVNALSHHMTTQVFRGGKIYQQEYSCGHPLYSVKEV 119

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
               +  GT+ TF PD  IF     +    L    +  AYL+  +    +  + I E+ G
Sbjct: 120 G-TADITGTKQTFWPDDTIFTV-TEYKFDILQARMRELAYLNKGITISLTD-RRIQEEDG 176

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
             +KE F+   G+K +++    N   +  ++    TEK  T    +E AI +       +
Sbjct: 177 SFKKEIFHSDEGVKEFVRFLNRNNDALIDDVIYLNTEKNNTP---IECAIMYNTGYRESL 233

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
            SY N I T EGGTHE+G R ALTR +KKYAE T+   K  + I  +D     + ++SV 
Sbjct: 234 HSYVNNINTIEGGTHEAGFRSALTRVLKKYAEDTKALEKAKVEISGEDFREGLIAVISVK 293

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + EP+F GQTKTKL + +    V  A+ +   +YL ++P EA ++++ VI  +  R+  R
Sbjct: 294 VAEPQFEGQTKTKLGNSEVSGAVNQAVGEALTYYLEEHPKEAKQIVDKVILAATARIAAR 353

Query: 434 KQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           K RE  ++ + +    LPGKLADCS       ELF+VEGDSAGGSAKQ R+R+ QA+LPL
Sbjct: 354 KARESVQRKSPMGGGGLPGKLADCSSRNPEECELFLVEGDSAGGSAKQGRSRAFQAILPL 413

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           RGKILNV  A   K   + ++ +++ ALG R 
Sbjct: 414 RGKILNVEKAMWHKAFESDEVNNIITALGVRF 445


>gi|194339091|gb|ACF49461.1| GyrB [Amycolatopsis nigrescens]
          Length = 463

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 175/466 (37%), Positives = 270/466 (57%), Gaps = 18/466 (3%)

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           HHL  EV+DN++DE +AGYA+ IEV+L  +G + VVD+GRGIPV  HP   NK TLE++L
Sbjct: 1   HHLIQEVVDNSVDEAMAGYASKIEVTLLADGGVRVVDDGRGIPVAMHP-VENKPTLEVVL 59

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFD  +Y +SGGLHGVG+SVVNALS  L V +  +  I++Q++    P++P++
Sbjct: 60  TQLHAGGKFDGESYAVSGGLHGVGVSVVNALSTRLDVEIHLEGKIWTQRYEMSEPVAPVQ 119

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
           ++       GT ITF  DP+IF     ++A  + +  Q  A+L+  +      ++   E+
Sbjct: 120 EQGPTSK-TGTTITFWADPEIFET-TTYNAETISRRLQEMAFLNKGLTIVLRDERVAEEE 177

Query: 255 YGIP--------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
                       ++  +++PGGL+ +++    ++  I   + +   +  G     VE A+
Sbjct: 178 TEEDAGGQTARVKERVYHYPGGLEDFVRHINGSKDPIHQTVVSFDAKGDG---LEVEVAM 234

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W     P + ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  DD+ 
Sbjct: 235 QWNNGFTPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDTNLTGDDVR 294

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                I+S+ + EP+F GQTKTKL + +A+  V+    +    +  +NP EA  ++   +
Sbjct: 295 EGLAAIVSIKLAEPQFEGQTKTKLGNSEAKSFVQTKTNEWLADWFERNPTEAKIVINKAV 354

Query: 424 ERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
             ++ R+  RK R+ V RK A+    LPGKL DC        EL+IVEGDSAGGSAK+ R
Sbjct: 355 SSAQARMAARKARDLVRRKGALDIGGLPGKLKDCRSTKPEECELYIVEGDSAGGSAKEGR 414

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528
           +   QA+LP+RGKI+NV  A  +++  N ++  L+ ALG     ++
Sbjct: 415 DSMYQAILPIRGKIINVEKARIDRVLKNTEVQSLITALGTGIHDEF 460


>gi|19909667|dbj|BAB87029.1| DNA gyrase subunit B [bacterium PC4]
          Length = 477

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 175/486 (36%), Positives = 273/486 (56%), Gaps = 27/486 (5%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV DNA+DE +AG+ +L+ + L+ +G ++V DNGRGIPV+ H K   
Sbjct: 1   DTDDGSGLHHMVFEVSDNAIDEALAGHCDLVLIELNPDGSVSVEDNGRGIPVDMH-KEEG 59

Query: 127 KSTLEIILTTLHAGGKF----DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
            S  E+I+T LHAGGKF    D++ Y++SGGLHGVG+SVVNALS  L +T+ R   +   
Sbjct: 60  VSAAEVIMTQLHAGGKFENTSDDNAYKVSGGLHGVGVSVVNALSQWLELTIWRDGKVHEM 119

Query: 183 KFSRGIPLSPLEKKEKVRN----------KRGTRITFRPDPKIFGDKAGFDAARLLKMTQ 232
           +F  G  +  LE                 K+GTR+TF P    F +   FD  +L    +
Sbjct: 120 RFEDGEAVKSLEVIGDAPKVEQNPDDNGFKKGTRVTFMPSHDTFKNVTEFDFEKLEHRYR 179

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             A+L+  V+     ++          + + ++ GG+  +++    N+  + SE  +   
Sbjct: 180 ELAFLNSGVRILLRDNR-----PEEALEHDLFYEGGIAAFVKYLDRNKQPLISEPISVSA 234

Query: 293 EKKGT-HRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ- 350
           EK G      +EW  ++      +  + N I   +GGTH +  R ALTR +  YA     
Sbjct: 235 EKDGIGIDVALEWNDSY---YENVLCFTNNIPQRDGGTHLAAFRSALTRTLNAYANSAGL 291

Query: 351 -NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
             K  +S+  +D+      I+SV + +P+F  QTK KLVS + ++ +E+ + +    +L 
Sbjct: 292 LKKEKVSLSGEDMREGLTAIVSVKLPDPKFGSQTKDKLVSSEVRQPLESLMGEKMTEWLE 351

Query: 410 QNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           +NP +A  +++ +I+ +  R   R+ RE++RK A+    LPGKLADC       +ELF+V
Sbjct: 352 ENPADAKAIIQKIIDAAAAREAARRAREMSRKGAMSVASLPGKLADCQDRNPANSELFLV 411

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           EGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  ++I +++++  L+QA+G   R ++ 
Sbjct: 412 EGDSAGGSAKQGRDRKTQAILPLKGKILNVERARFDRIISSKEVGTLIQAMGTGLRDEFD 471

Query: 530 EEDLRY 535
            E LRY
Sbjct: 472 LEKLRY 477


>gi|225348707|gb|ACN87315.1| DNA gyrase beta-subunit [Amycolatopsis umgeniensis]
          Length = 468

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 179/475 (37%), Positives = 271/475 (57%), Gaps = 19/475 (4%)

Query: 72  KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLE 131
           + LHHL  EV+DN++DE +AGYA  +EV+L  +G + VVD+GRGIPV+ HPK   K TLE
Sbjct: 1   RGLHHLVQEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVDMHPK-EKKPTLE 59

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           ++LT LHAGGKFD+ +Y +SGGLHGVG+SVVNALS +L   + R    + Q+++  IP  
Sbjct: 60  VVLTVLHAGGKFDSDSYAVSGGLHGVGVSVVNALSTKLIAEIKRGGHSWRQEYTDQIP-G 118

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
            LE      +  GT ITF  D  IF     ++   + +  Q  A+L+  +      ++  
Sbjct: 119 ELEDLGPAED-TGTVITFWADGDIFET-TTYNFETISRRLQEMAFLNKGLTLSLRDERVA 176

Query: 252 AEKYGIP--------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
            E+            +++ + +PGGL+ +++    ++  I + + + + +  G     VE
Sbjct: 177 DEETEEDASGQAARVKEKTYCYPGGLEDFVKHINGSKDPIHASVISFEAKGTG---LEVE 233

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISD 360
            A+ W     P + ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  D
Sbjct: 234 VAMQWNNGFTPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDANLTGD 293

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D+      I+S+ + EP+F GQTKTKL + +A+  V+    +    +  +NP EA  ++ 
Sbjct: 294 DVREGLAAIVSIKLSEPQFEGQTKTKLGNSEAKTFVQQTSNEWLADWFERNPTEAKTVIN 353

Query: 421 WVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
             I  S+ R+  RK R+ V RK A+    LPGKL DC        EL+IVEGDSAGGSAK
Sbjct: 354 KSISSSQARMAARKARDLVRRKGALEIGGLPGKLKDCRSTNPSECELYIVEGDSAGGSAK 413

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
           + R+   QA+LP+RGKI+NV  A  +++  N ++  L+ ALG     ++  E LR
Sbjct: 414 EGRDSMYQAILPIRGKIINVEKARIDRVLKNTEVQSLITALGTGIHDEFDLEKLR 468


>gi|225677156|ref|ZP_03788155.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225590823|gb|EEH12051.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 449

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 162/443 (36%), Positives = 244/443 (55%), Gaps = 12/443 (2%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
             + +  ++Y+A +I+IL GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY
Sbjct: 10  KRSNTMENSYNADAIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDESLAGY 69

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
            + IEVS++ +G ++V DNGRGIP + H +    S  E+I+  LHAGGKFD++TY++SGG
Sbjct: 70  CDKIEVSINADGSVSVTDNGRGIPTDIHEE-EGISAAEVIMIQLHAGGKFDSNTYKVSGG 128

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVGISVVNALS  L +T+ R       +F  G  + PL+   +  NKRGT++TF P  
Sbjct: 129 LHGVGISVVNALSSWLELTIWRNKKEHFMRFEDGESIEPLKVVNENTNKRGTKVTFMPST 188

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTY 272
           + F     F  + L    +  A+L+  +       + E   +    +  +     G   +
Sbjct: 189 ETFNGIN-FSYSTLESRIRELAFLNSNIDITLRDLRNEPYTESHFNQSNQSKDNFGTANF 247

Query: 273 LQTKLENRSLISSE-IFTGKTEKKGTH-RGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330
           +Q   +N++ ++      G  E  G     ++EW  ++      +  + N I   +GGTH
Sbjct: 248 VQYLDKNKTHVTKIASMKGDAEDLGISLEISMEWNDSY---YENMLCFTNNIRQRDGGTH 304

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR I  YA       K  +++  +D+      +LS+ + +P+F+ QTK KLV
Sbjct: 305 LAGFRSALTRCINNYATNEGFLKKAKVNLTGEDVREGLTCVLSLKMPDPKFSSQTKDKLV 364

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447
           S +A+  VE+ + D     L  +P  A  ++E  I  ++ R   RK RE V  K  I   
Sbjct: 365 SSEARAVVESIVSDKLSTILETDPKLAASIVERAIRSAKGREAARKARELVKSKNNIDIA 424

Query: 448 RLPGKLADCSQNIAHGTELFIVE 470
            LPGKLADC +     +ELFIVE
Sbjct: 425 TLPGKLADCQEKAPELSELFIVE 447


>gi|9971367|dbj|BAB12490.1| DNA gyrase B subunit [Tenacibaculum ovolyticum]
          Length = 474

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 174/483 (36%), Positives = 271/483 (56%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALSD L  TV ++  ++ Q++ +G  L P++   +  +  
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDHLTATVHKEGKVWQQEYEKGKALYPVKTIGET-DFT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF PD  IF     ++   L    +  AYL+  +    +  +   ++     +E F
Sbjct: 60  GTIVTFLPDKSIFAQTTEYNYDTLSARLRELAYLNKGITITLTDKRNTDDEG-NYIQETF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTI 322
               GL  +++     R  +++ + + + EK G     VE A+ +     E    Y N I
Sbjct: 119 RSTEGLPEFIKYLDSTREQLTANVISMEGEKNGIP---VEVAMVYNTSYSENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KKYA+ +   + +      DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLSGFRRGLTHTLKKYADESGLLKNVKFEIAGDDFREGLTAIISVKVAEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + +    V  A+ +    YL +NP +A  +++ VI  ++ R   RK RE+  
Sbjct: 236 GQTKTKLGNREVTSAVSQAVSEMLTDYLEENPNDAKTIVQKVILAAQARHAARKAREMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV
Sbjct: 296 RKTVMSIGGLPGKLSDCSETDPAQCEIFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR-----YEKVIIMTDADVDGAHIASL 554
             A   K+  N++I ++  ALG    ++     L      Y KV+IM DADVDG+HIA+L
Sbjct: 356 EKAMQHKVFENEEIKNMFTALGVSIGTEEDPRALNLSKIRYHKVVIMCDADVDGSHIATL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +++EQ ++++ +PPL+ + +G K  YA D+  +  I ++   +    + I
Sbjct: 416 ILTFFFRYMREMVEQGYIYIATPPLYLVKKGQKREYAWDDNQRDLIAQKLGVN----VNI 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|309804902|ref|ZP_07698964.1| DNA gyrase, B subunit, C-terminal domain protein [Lactobacillus
           iners LactinV 09V1-c]
 gi|309809735|ref|ZP_07703589.1| DNA gyrase, B subunit, C-terminal domain protein [Lactobacillus
           iners SPIN 2503V10-D]
 gi|308165841|gb|EFO68062.1| DNA gyrase, B subunit, C-terminal domain protein [Lactobacillus
           iners LactinV 09V1-c]
 gi|308169914|gb|EFO71953.1| DNA gyrase, B subunit, C-terminal domain protein [Lactobacillus
           iners SPIN 2503V10-D]
          Length = 355

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 137/361 (37%), Positives = 204/361 (56%), Gaps = 9/361 (2%)

Query: 329 THESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
            HESG + ALTR +  YA   +  +    ++  +D+      ++S+    P+F GQTKTK
Sbjct: 1   MHESGFKTALTRVVNDYARKAKILKDNDDNLSGEDIREGMTAVISIKHPNPQFEGQTKTK 60

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIR 445
           L + DA+  V+ A  D F  +L++NP    K++E   +        +R +    +K+ + 
Sbjct: 61  LGNSDARAAVDKAFSDTFSKFLLENPQVGRKIVEKGQLAARARIAAKRAREVTRKKSGLE 120

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLAD + N    +ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  +
Sbjct: 121 IANLPGKLADNTSNDPKISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMD 180

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           +I  NQ+I  +  ALG    + +     RY K+IIMTDADVDGAHI +LLLT FY+ M  
Sbjct: 181 RILANQEIRTIFTALGTGFGADFDINKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMKP 240

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           +I+  ++++  PPL+++ QG    Y   +E     L   +     K  + R+KGLGEM  
Sbjct: 241 MIKAGYVYIARPPLYQVRQGKVIKYLDTDEELHDYLGTLQPS--PKPIVQRYKGLGEMDP 298

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL ET M+   R L RV    D    +D +++   LMG +   R +FI++ A +++++ 
Sbjct: 299 EQLWETTMNPENRRLDRV----DPEDAEDAEEAFEMLMGNEVGPRREFIEQNAKYVENLD 354

Query: 686 T 686
            
Sbjct: 355 A 355


>gi|19909665|dbj|BAB87028.1| DNA gyrase subunit B [Erythrobacter sp. PC8]
          Length = 482

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 172/491 (35%), Positives = 280/491 (57%), Gaps = 27/491 (5%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV DNA+DE +AG+ +L+ + L+ +G ++V DNGRGIPV  H K   
Sbjct: 1   DTDDGSGLHHMVFEVSDNAIDEALAGHCDLVLIELNPDGSVSVEDNGRGIPVGMH-KEEG 59

Query: 127 KSTLEIILTTLHAGGKF----DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
            S  E+I+T LHAGGKF    D++ Y++SGGLHGVG+SVVNALS+ L +T+ R+      
Sbjct: 60  VSAAEVIMTQLHAGGKFENTSDDNAYKVSGGLHGVGVSVVNALSEWLELTIWREGKEHWM 119

Query: 183 KFSRGIPLSPLEKKEKVRN----------KRGTRITFRPDPKIFGDKAGFDAARLLKMTQ 232
           +F  G  ++ LE K               K+GTR+TF+     F +   FD  +L    +
Sbjct: 120 RFEHGDAVNSLEVKGDAPKVDQNPDENGLKKGTRVTFKASTDTFKNVTEFDFEKLEHRYR 179

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             A+L+  V+      +     +    + + ++ GG+  +++    N+  + S+  +   
Sbjct: 180 ELAFLNSGVRILIRDKR-----HEEVVEHDLFYEGGIAAFVRWLDRNKEALISDPISVSA 234

Query: 293 EKKGT-HRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ- 350
           EK G      +EW  ++      +  + N I   +GGTH +  R ALTR +  YA+    
Sbjct: 235 EKDGIGIDVALEWNDSY---YENVLCFTNNIPQRDGGTHLAAFRAALTRTLNGYADREGL 291

Query: 351 -NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
             K  +S+  +D+      I+SV + +P+F+ QTK KLVS + ++ +E+ + +    +L 
Sbjct: 292 LKKEKVSLSGEDMREGLTAIVSVKLPDPKFSSQTKDKLVSSEVRQPLESLMGEKMTEWLE 351

Query: 410 QNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           +NP +A  +++ +I+ +  R   ++ RE++RK A+    LPGKL+DC +  A   E+F+V
Sbjct: 352 ENPADAKAIIQKIIDAAAAREAAKRAREMSRKGAMSVASLPGKLSDCRERDATKAEIFLV 411

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           EGDSAGGSAK  R+   QA+LPL+GKILNV  A  ++I +++++  L+QA+G   R ++ 
Sbjct: 412 EGDSAGGSAKGGRDSQYQAILPLKGKILNVERARFDRIISSKEVGTLIQAMGTGIRDEFD 471

Query: 530 EEDLRYEKVII 540
            E LRY K++I
Sbjct: 472 LEKLRYHKIVI 482


>gi|213418970|ref|ZP_03352036.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 552

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 174/469 (37%), Positives = 271/469 (57%), Gaps = 16/469 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P +PL       +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F+
Sbjct: 60  TMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    R
Sbjct: 230 QTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFF 409

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           Y++M +++E+ H+++  PPL+++ +G +  Y  D+E   +        G
Sbjct: 410 YRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 458


>gi|257838314|gb|ACV71147.1| gyrase B [Enterorhabdus caecimuris]
          Length = 449

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 169/448 (37%), Positives = 255/448 (56%), Gaps = 8/448 (1%)

Query: 80  EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139
           EV+DNA+DE +AGY + IEV +  +  ++V DNGRGIPV+ HPK     T+E++LT LHA
Sbjct: 1   EVVDNAVDEALAGYCDTIEVWIHPDNSISVNDNGRGIPVDKHPK-EKIPTVEVVLTILHA 59

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKF    Y++SGGLHGVG+SVVNALS ++ V V R    +   F  G   + L +    
Sbjct: 60  GGKFGGEGYKVSGGLHGVGVSVVNALSTKVEVQVRRDGKTYEIDFDHGKTNNKLHEVGPA 119

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
           +N  GT +TF PDP IF +   +D   L    +  ++L+  +K     ++ + +  G P 
Sbjct: 120 KN-TGTMVTFWPDPAIFTETTTYDYDTLAARFREMSFLNKGLKIILHDER-VTDADGNPR 177

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYC 319
            E F   GG+  +++   + +  ++  I+       GT    ++W+ ++      + ++ 
Sbjct: 178 TEVFQALGGIVDFVKFINDGKETLNKPIYFEAENADGTVEVALQWSSSYSTN--SVMAFA 235

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I T EGGTH  G + A+TR I  YA       ++  ++  +D       I+SV + +P
Sbjct: 236 NNINTHEGGTHMDGFKQAITRTINDYARAKGLLKEKDNNLSGEDAREGLAAIISVKLHDP 295

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F GQTKTKL + + +  V+NA+      YL +NP  A +++    +  + R   RK RE
Sbjct: 296 QFEGQTKTKLGNTEIRPLVQNAVTQGLAEYLEENPTPAKRIIGKATQALKAREAARKARE 355

Query: 438 V-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
           +  RK  +    +PGKLADC+   A  +E+FIVEGDSAGGSAKQAR+R  QA+LPLRGKI
Sbjct: 356 MTRRKNVLDSFSMPGKLADCASKDASQSEIFIVEGDSAGGSAKQARDRKFQAILPLRGKI 415

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRT 524
           LNV  AG  +  +++ I  L+ A+G   
Sbjct: 416 LNVERAGLHRSLSSETISSLITAIGTNI 443


>gi|161898000|gb|ABX80109.1| DNA gyrase subunit B [Streptomyces caelestis]
          Length = 485

 Score =  334 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 181/488 (37%), Positives = 268/488 (54%), Gaps = 18/488 (3%)

Query: 62  PGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENH 121
           PGMYIG T E+ LHHL  EV+DN++DE +AG+A+ I+V++  +G + VVDNGRGIPV   
Sbjct: 1   PGMYIGSTGERGLHHLVYEVVDNSVDEALAGHADTIDVTILADGGVRVVDNGRGIPVGIV 60

Query: 122 PKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFS 181
           P    K  LE++LT LHAGGKF    Y +SGGLHGVG+SVVNALS ++ V V      ++
Sbjct: 61  P-SEGKPALEVVLTVLHAGGKFGGGGYAVSGGLHGVGVSVVNALSSKVTVEVKTDGHRWT 119

Query: 182 QKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241
           Q +  G+P +PL + E      GT +TF  DP IF     +    L +  Q  A+L+  +
Sbjct: 120 QDYKMGVPTAPLVQHEATEE-TGTSVTFWADPDIFET-TEYSFETLSRRFQEMAFLNKGL 177

Query: 242 KTCWSCDKEI-----------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
               + ++E            A++    +   +++ GG+  +++     +          
Sbjct: 178 TIRLTDERESAKATSGADEAGADETADVKTVTYHYEGGIVDFVKYLNSRKGEAVHPTVID 237

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
              +    + ++E A+ W       + S+ N I T EGGTHE G R ALT  I KYA   
Sbjct: 238 LEAEDKDRQFSLEVAMQWNSGYTEGVYSFANIIHTHEGGTHEEGFRAALTSLINKYARDK 297

Query: 350 QN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
           +   ++  ++  DD+      I+SV + EP+F GQTKTKL + + +  V+  + +  + +
Sbjct: 298 RLLREKDDNLTGDDIREGLTAIISVKLGEPQFEGQTKTKLGNTEIKTFVQRVVYEHLNDW 357

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTEL 466
           L +NP EA  ++   I  +  R+  RK R++ R+   +    LPGKL+DC  N     E+
Sbjct: 358 LDRNPNEAADIIRKGIAAATARVAARKARDLTRRKGLLETASLPGKLSDCQSNDPIKCEI 417

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS 526
           FIVEGDSAGGSAK  RN   QA+LP+RGKILNV  A  ++I  NQ+I  ++ A G     
Sbjct: 418 FIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEKARIDRILQNQEIQAMISAFGTGVHE 477

Query: 527 QYREEDLR 534
            +  E LR
Sbjct: 478 DFDIEKLR 485


>gi|9971373|dbj|BAB12493.1| DNA gyrase B subunit [Polaribacter glomeratus]
          Length = 474

 Score =  334 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 178/483 (36%), Positives = 273/483 (56%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALS+ L  TV +   ++ Q++S+G  L P++   +  +  
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSEHLTATVHKDGKLWQQEYSKGKALYPVKTIGET-DFN 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF PD  IF     F+   L    +  +YL+  +    +  +E  ++   P  E F
Sbjct: 60  GTVVTFLPDKTIFTQTTEFNYDTLASRMRELSYLNKGITITLTDKRETDDEGNFP-TEIF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           +   GL  +++     R  ++S I + + EK G     VE A+ +       + SY N I
Sbjct: 119 HSTEGLPEFIRYLDSTREQLTSTIISMEGEKNGIP---VEVAMVYNTSYAENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFA 380
            T EGGTH +G R  LT  +KKYA+ +   + +      DD       I+SV ++EP+F 
Sbjct: 176 NTHEGGTHLAGFRRGLTSTLKKYADDSGLLKNVKFEIAGDDFREGLTAIVSVKVQEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + D    V  A+ +    YL +NP +A  +++ VI  +  R   RK RE+  
Sbjct: 236 GQTKTKLGNRDVTSAVSQAVSEMLTDYLEENPNDAKIIVQKVILAATARHAARKAREMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV
Sbjct: 296 RKTVMSIGGLPGKLSDCSETDPAQCEIFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR-----YEKVIIMTDADVDGAHIASL 554
             A   K+  N++I ++  ALG    ++     L      Y KV+IM DADVDG+HIA+L
Sbjct: 356 EKAMQHKVFENEEIKNMFTALGVSIGTEEDPRALNLSKVRYHKVVIMCDADVDGSHIATL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +++EQ ++++ +PPL+ + +G K  YA D+  +  ++ +      G   I
Sbjct: 416 ILTFFFRYMREMVEQGYIYIATPPLYLVKKGQKREYAWDDNQRDLLVHQMG----GSATI 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|19909695|dbj|BAB87043.1| DNA gyrase subunit B [Paracoccus aminophilus]
          Length = 467

 Score =  334 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 174/476 (36%), Positives = 254/476 (53%), Gaps = 20/476 (4%)

Query: 73  ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
            LHH+  EV+DN +DE +AG+A+ + V +  +  ++V DNGRGIPV+ HP     S  E+
Sbjct: 1   GLHHMVYEVVDNGIDEALAGHADFVRVKIHSDSSVSVRDNGRGIPVDMHP-SEGVSAAEV 59

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
           I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALSD L + + R       +F  G  +  
Sbjct: 60  IMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLELRIWRNGKEHYVRFEHGDTVEH 119

Query: 193 LEKKEKVR-NKRGTRITFRPD-----PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           L         + GT + F                 +    L    +  A+L+  V+    
Sbjct: 120 LRVVGDSEPGETGTEVRFLASTKEDGKDGTFSNLDYVFKTLENRLRELAFLNSGVRIILE 179

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
            ++        P + E ++ GG++ +++    +++ +  +      EK G     VE A+
Sbjct: 180 DER-----PAEPIRTELHYDGGVREFVRYIDRSKTAVMKDPIFITGEKSGI---GVEVAM 231

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W +     +  + N I   +GGTH +G R ALTR I  YA+ +    K  I    DD  
Sbjct: 232 WWNDSYHETVLPFTNNIPQRDGGTHLAGFRGALTRVINNYAQTSGIAKKEKIDFTGDDAR 291

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                +LSV + +P+F+ QTK KLVS + +  VE  + +    +  +NP EA +++  +I
Sbjct: 292 EGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGLVNEKLSEWFEENPTEAKQIVGKII 351

Query: 424 ERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           E +  R   RK RE   RKTA+    LPGKLADC +     +ELFIVEGDSAGGSAKQ R
Sbjct: 352 EAALAREAARKARELTRRKTAMDVASLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGR 411

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEK 537
           +R NQAVLPLRGKILNV  A  +++ +++ I  L+ ALG            LRY K
Sbjct: 412 SRQNQAVLPLRGKILNVERARFDRMLSSEMIGTLITALGTGIGRDEFNLNKLRYHK 467


>gi|71898809|ref|ZP_00680977.1| DNA topoisomerase (ATP-hydrolyzing) [Xylella fastidiosa Ann-1]
 gi|71731395|gb|EAO33458.1| DNA topoisomerase (ATP-hydrolyzing) [Xylella fastidiosa Ann-1]
          Length = 458

 Score =  334 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 187/467 (40%), Positives = 266/467 (56%), Gaps = 20/467 (4%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y+A+ I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AGYAN IEV+L  
Sbjct: 5   YNAADIEVLTGLDPVKRRPGMY---TDTTRPNHLAQEVIDNSVDEALAGYANRIEVTLYK 61

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G   V DNGRG+PV+ HP+      +E+ILT LHAGGKF N  Y  SGGLHGVG+SVVN
Sbjct: 62  DGSCEVADNGRGMPVDIHPE-EKIPGVELILTRLHAGGKFSNRNYTFSGGLHGVGVSVVN 120

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222
           ALS ++ + + R+ +    +F  G  +S L+    V +   GTR+ F PD K F     F
Sbjct: 121 ALSSKVDLFIKREGSEHHMEFREGFAVSKLKVLGTVSKKNTGTRLRFWPDSKYFDT-PKF 179

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L  + ++KA L   +      +          E   ++F  GL+ YL+ ++    L
Sbjct: 180 NVRVLRHLLRAKAVLCPGLTVELLEE-------ATGEINTWHFKDGLRDYLKGEMTESEL 232

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRG 341
           + +E+F G  +K       V+WA+AW  E      SY N I T + GTH +GLR  LT  
Sbjct: 233 LPAELFIGCLKKDTE---VVDWAVAWVPEGELTQESYVNLIPTPQHGTHVNGLRSGLTDA 289

Query: 342 IKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
           ++++ +      R I +  +D+      +LS+ + +P+F+GQTK +L S  A   +E+ +
Sbjct: 290 LREFCDFRNLLPRGIKLAPEDVWDRVTFVLSLKMSDPQFSGQTKERLSSRQAAGFIESTV 349

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
            D F  +L QN      + +  IER+  RL+   +++V RK       LPGKLADC    
Sbjct: 350 HDAFSLWLNQNVDIGEHIAQIAIERASARLK--TEKQVTRKKITHGPALPGKLADCISLD 407

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
              TELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN     S + 
Sbjct: 408 LSRTELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGQR 454


>gi|9971381|dbj|BAB12497.1| DNA gyrase B subunit [Myroides odoratus]
          Length = 474

 Score =  334 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 189/483 (39%), Positives = 283/483 (58%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALSD L  TV R   I+ Q++S+G  L P++   +  +KR
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDLLRATVYRDGKIYEQEYSKGKALFPVKVIGET-DKR 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F+PDP IF     +    L    +  A+L+  +    +  +E+ EK    + E F
Sbjct: 60  GTTVMFKPDPTIFTQTLEYSYDTLASRLRELAFLNKGLTITLTDAREVDEKGQ-QKSEVF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           +   GLK +++    NR+ I +E+   +++K       VE A+ + +     I SY N I
Sbjct: 119 FSKEGLKEFIKFLDGNRTPIINEVIWMESDKGDVP---VEVALVYNDTYSENIYSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH  G R+ LTR +KKYA+ +    K    I  DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLQGFRMGLTRTLKKYADASGLLDKLKFEISGDDFREGLTAIISVKVMEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + +    V  A+ +  ++YL +NP +A  +++ VI  ++ R   +K RE+  
Sbjct: 236 GQTKTKLGNREVVSPVSQAVAEMLENYLEENPNDAKIIVQKVILAAQARHAAKKAREMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV
Sbjct: 296 RKTVMTGGGLPGKLSDCSEQDPTKCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASL 554
             A   K+  +++I ++  ALG    ++        E LRY KV+IM DADVDG+HIA+L
Sbjct: 356 EKAMGHKVFESEEIKNIFTALGVTIGTEEDSKALNLEKLRYHKVVIMCDADVDGSHIATL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M  LIE  H+F+ +PPL+ + +G + VYA  +E +  ++EE          +
Sbjct: 416 ILTFFFRYMRGLIENGHVFIATPPLYMVKKGQRKVYAWSDEERIDLMEEMGNGS----SV 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|13358822|dbj|BAB33157.1| DNA gyrase B subunit [Porphyromonas gingivalis]
          Length = 478

 Score =  333 bits (854), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 176/483 (36%), Positives = 271/483 (56%), Gaps = 14/483 (2%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALS  L   V R   I  Q+FS G PL  +E       + 
Sbjct: 1   DKGSYKVSGGLHGVGVSCVNALSTYLRAEVYRNGKIHMQEFSCGKPLHDVEVIGST-ERT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT I F+PD  IF     +  + L K  +  +YL+  +    +  + + E     +++ F
Sbjct: 60  GTTIQFKPDSSIFSVT-EYQYSILAKRLRELSYLNAGITLTLTDKRTLKEDGSGYKQDVF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
               GLK +++     +  +   +    TEK+G     VE A+ +       + SY N I
Sbjct: 119 RSEEGLKEFVRHLDRMKEPLVDNVIHIVTEKQGIP---VEVAMTYNTSYLENVYSYVNDI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH +G R  LTR +KKYA  ++   K  + I  DD       ++S+ + EP+F 
Sbjct: 176 NTIEGGTHLAGFRRGLTRTLKKYATDSKLLDKVKVEITGDDFREGLTAVISIKVAEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +    V+ A+ +  ++YL ++P EA  +++ V+  +  R   RK RE+ +
Sbjct: 236 GQTKTKLGNNEVTGAVDMAVSEALEYYLEEHPKEAKLIVDKVVLAATARQAARKAREMVQ 295

Query: 441 KTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           + + +    LPGKLADCS       ELF+VEGDSAGG+AKQ R+R  QA+LPLRGKILNV
Sbjct: 296 RKSPLSGGGLPGKLADCSSKDPEQCELFLVEGDSAGGTAKQGRDREFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASL 554
             A   K+  +++I ++  ALG    ++   +      LRY KV+IMTDADVDG+HIA+L
Sbjct: 356 EKAMQHKVFESEEIRNIYTALGVTIGTEEDSKALNLSKLRYHKVVIMTDADVDGSHIATL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M  LIE  ++F+ +PPL+   +G +  Y   E+ +Q  ++ +    + ++ +
Sbjct: 416 ILTFFFRNMRTLIENGYVFIATPPLYLCKKGKEQEYCWTEQQRQAFVDRYADGNESRVHV 475

Query: 615 SRF 617
            R+
Sbjct: 476 QRY 478


>gi|161897998|gb|ABX80108.1| DNA gyrase subunit B [Streptomyces azureus]
          Length = 482

 Score =  333 bits (854), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 180/485 (37%), Positives = 270/485 (55%), Gaps = 18/485 (3%)

Query: 63  GMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122
           GMYIG T E+ LHHL  EV+DN++DE +AGYA+ I+V++  +G + VVDNGRGIPV+ HP
Sbjct: 1   GMYIGSTGERGLHHLVQEVVDNSVDEALAGYADTIDVTILADGGVRVVDNGRGIPVDMHP 60

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
               K  +E++LT LHAGGKF    Y +SGGLHGVG+SVVNALS ++ V + R    ++Q
Sbjct: 61  -VEKKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVSVVNALSTKVSVDIKRDGYRWTQ 119

Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
            +  G+P +PL K E V +  GT +TF  DP IF     +    L +  Q  A+L+  ++
Sbjct: 120 DYKMGVPTAPLVKHEAVED-SGTTVTFWADPDIFET-TDYSFETLSRRFQEMAFLNKGLR 177

Query: 243 TCWSCDKEI-----------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGK 291
              + ++E             ++    +   +++ GG+  +++     +           
Sbjct: 178 INLTDERESAKATAGADEAGEDEKHEVKHVSYHYEGGIVDFVKYLNSRKGEAVHPTVIDL 237

Query: 292 TEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
             +    + ++E A+ W       + S+ N I T EGGTHE G R ALT  I KYA   +
Sbjct: 238 EAEDKDRQLSLEVAMQWNSGYTEGVYSFANIIHTHEGGTHEEGFRAALTSLINKYARDKR 297

Query: 351 N--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
              ++  ++  DD+      I+SV + EP+F GQTKTKL + + +  V+  + +  + +L
Sbjct: 298 LLREKDDNLTGDDIREGLTAIISVKLGEPQFEGQTKTKLGNTEVKTFVQRVVYEHLNDWL 357

Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELF 467
            +NP EA  ++   I  +  R+  RK R++ R+   +    LPGKL+DC  N     E+F
Sbjct: 358 DRNPNEAADIIRKGIAAATARVAARKARDLTRRKGLLETASLPGKLSDCQSNDPTKCEIF 417

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           IVEGDSAGGSAK  RN   QA+LP+RGKILNV  A  ++I  NQ+I  ++ A G      
Sbjct: 418 IVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEKARIDRILQNQEIQAMISAFGTGVHED 477

Query: 528 YREED 532
           +  E 
Sbjct: 478 FDIEK 482


>gi|9971369|dbj|BAB12491.1| DNA gyrase B subunit [Flexibacter litoralis]
          Length = 483

 Score =  333 bits (854), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 183/488 (37%), Positives = 275/488 (56%), Gaps = 19/488 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  TY++SGGLHGVG+S VNALSD L V V R   IF Q++S G P   + +     +  
Sbjct: 1   DKDTYKVSGGLHGVGVSCVNALSDHLRVEVHRNGKIFEQEYSCGAPKYSVREIG-TTDVS 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE---IAEKYGIPEK 260
           GT++TF PD  IF     F    +    +  +YL+  VK   S  ++     ++ G    
Sbjct: 60  GTQVTFHPDATIFTHSV-FKYETVANRLRELSYLNAGVKITLSDQRKEFGDKDENGNFVT 118

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYC 319
           E F   GGL+ +++   ++R+ I       + +K       V+ AI +     E   SY 
Sbjct: 119 ETFLSEGGLREFVEFLDKSRTAIIPNAIYVEGDKNDVP---VQVAILYNTSYSENVFSYV 175

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPE 378
           N I T EGGTH +G   ALTR +K YA+      + + +   D       ++SV + EP+
Sbjct: 176 NNINTIEGGTHITGFYRALTRVLKSYADKNGLTDKKVELSGGDFREGMTAVISVKVMEPQ 235

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
           F GQTKTKL + +    VE+ + D   +YL +NP EA  +++ V   ++ R+  RK RE+
Sbjct: 236 FEGQTKTKLGNSEVSGAVESCVADALYNYLEENPKEAKIIIQKVTLAAQARMAARKAREM 295

Query: 439 -NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
             RKTA+    LPGKLADCS+      E+++VEGDSAGGSAKQ R+R +QA+LPLRGKIL
Sbjct: 296 VQRKTALSGTGLPGKLADCSEKDPEKCEIYLVEGDSAGGSAKQGRDRQSQAILPLRGKIL 355

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE------EDLRYEKVIIMTDADVDGAHI 551
           NV  A   +I +N++I +++ ALG R     +       + LRY K++IMTDADVDG+HI
Sbjct: 356 NVEKAQEHRIYDNEEIKNIITALGIRFGENEQGEKYLNLDKLRYHKIVIMTDADVDGSHI 415

Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK--KHGK 609
            +L+LT F++ M DL+E+ ++++  PPL+ I +G + +Y  DE  +++ + E        
Sbjct: 416 RTLILTLFFRYMKDLVEKGYVYIAQPPLYLIKKGKQKIYCWDEPQREQAMRELGGSNGNM 475

Query: 610 GKIEISRF 617
             + I R+
Sbjct: 476 NGVNIQRY 483


>gi|10281018|dbj|BAB13750.1| type II DNA topoisomerase [Candida tropicalis]
          Length = 782

 Score =  333 bits (853), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 130/633 (20%), Positives = 239/633 (37%), Gaps = 48/633 (7%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPN 126
           T    L+ +F E++ NA D  I       I+V +D  N  + V+++G+GIPVE H K  N
Sbjct: 10  TIVPGLYKIFDEILVNAADNKIRDPSMKNIKVKIDPENNIIEVMNDGKGIPVEMHTK-EN 68

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR--QNTIFSQKF 184
               E+I   L     +D++  +++GG +G G    N  S +  V  A      ++ Q +
Sbjct: 69  MYIPELIFGNLLTSSNYDDNQKKVTGGRNGFGAKWCNIFSTQFEVETADLNTGKLYKQTW 128

Query: 185 SRGIPLSPLEKKEK-VRNKRGTRITFRPDPKIF--GDKAGFDAARLLKMTQSKAYLSGRV 241
           +  +      K       K  T+ITF+PD   F          A L +            
Sbjct: 129 TDNMTNVSKPKITTLKSKKEYTKITFKPDLSKFDMDSLDDDLLAVLRRRVYDLCGTVKSC 188

Query: 242 KTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
               +  +     +    +               +       ++ +              
Sbjct: 189 NIYLNDKRLSISSFKSYVEMYVKAIRERSPEPLAEDGTLKNFTTIVH-------EVFNER 241

Query: 302 VEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKK-YAELTQNKRAISIISD 360
            E A A         S+ N+I T  GGTH   +   +   +    ++  + K+ + I   
Sbjct: 242 WEVAFAVGHSTFNQVSFVNSIATTAGGTHVKYVSDQIINKLVDTLSKKEKGKKKLMIKPQ 301

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           ++  +    ++  I  P F  QTK +L +  +Q           + ++  + + +  L  
Sbjct: 302 EVRDNMFLFINCLIENPAFTSQTKEQLTTKVSQF-------GGKEKFVAGDNLISRILKT 354

Query: 421 WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIA-----HGTELFIVEGDSAG 475
            ++++        + + + +    RK R+ G+++    N A     H   L + EG SA 
Sbjct: 355 SIVDKIRAIASANEDKALQKVDGSRKSRIKGQVSLVDANKAGTKLGHNCTLILTEGLSAL 414

Query: 476 GSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
             A    +   R      PLRGK+LNV  A +++I  N +I  L Q +G + +  Y  E+
Sbjct: 415 NLAVAGLSVVGRDYYGCFPLRGKLLNVREASTDQISKNAEINALKQIIGLQHKKHYTAEN 474

Query: 533 ---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQG--- 585
              LRY  ++IMTD D DG+HI  L++ F       L+E    L     P+ ++T     
Sbjct: 475 IKQLRYGHIMIMTDQDQDGSHIKGLIINFLETSFPGLLEIPGFLLEFITPIVKVTVKTRG 534

Query: 586 ---TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLR 642
               + +  +     +   +      +       +KGLG     + +E     ++     
Sbjct: 535 SGNNRVIPFYTMPEFEAWRDGEGAECR--WTHKYYKGLGTSTPMEAREYFTALDRHLKKF 592

Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675
             +            + +K    KADER +++Q
Sbjct: 593 HALQG--QDSNYIDLAFSK---KKADERKEWLQ 620


>gi|9971347|dbj|BAB12480.1| DNA gyrase B subunit [Flavobacterium johnsoniae]
          Length = 474

 Score =  333 bits (853), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 189/483 (39%), Positives = 278/483 (57%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+SVVNALS  +  TV R+  I+ Q++ RG  L P+++  +  +KR
Sbjct: 1   DKDSYKVSGGLHGVGVSVVNALSVHMKSTVFREGKIYEQEYERGKSLYPVKQIGET-DKR 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GTR TF PD  IF     F    L    +  ++L+  +   ++  +E+ +K    + E F
Sbjct: 60  GTRQTFFPDDTIFQQTTEFSYDTLSARMRELSFLNKGITITFTDKREVDDKG-EFKSEVF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           +   GLK Y++    NR  I S + +   EK       VE A+ +       I SY N I
Sbjct: 119 HSDEGLKEYIRYLDGNREPIISHVISMDHEK---GEIPVEVALIYNTSYSENIFSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH  G R  LTR +KKYA+ +    K    I  DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLQGFRSGLTRTLKKYADASGLLDKLKFEISGDDFREGLTAIISVKVSEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + +    V  A+ +  ++YL +NP +A  +++ VI  ++ R   +K RE+  
Sbjct: 236 GQTKTKLGNREVVSPVSQAVGEMLENYLEENPNDAKIIIQKVILAAQARHAAKKAREMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKL+DCS+      E+++VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV
Sbjct: 296 RKTVMGGGGLPGKLSDCSEQDPARCEVYLVEGDSAGGTAKQGRDRNFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASL 554
             A   K+  N++I ++  ALG    +         E LRY KVIIM DADVDG+HI++L
Sbjct: 356 EKAMHHKVFENEEIRNIFTALGVTVGTAEDSKALNIEKLRYHKVIIMCDADVDGSHISTL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +LIE+ H+++ +PPL+ + +G K  YA ++  + +  E       G   I
Sbjct: 416 ILTFFFRFMKELIEEGHVYIAAPPLYLVKKGNKKEYAWNDVQRDQANERMG----GSANI 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|57868974|gb|AAW57480.1| gyrase B [Candidatus Regiella insecticola]
          Length = 634

 Score =  333 bits (853), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 174/469 (37%), Positives = 272/469 (57%), Gaps = 16/469 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVGISVVNALS++L + + R+  I  Q +  G P +PL    +   + G
Sbjct: 1   DNSYKVSGGLHGVGISVVNALSEKLELVIHREGKIHEQTYMMGEPQTPLRIVGETA-QTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           TR+ F P  + F +   F    L K  +  ++L+  +      +++  E       + F+
Sbjct: 60  TRVRFWPSLQTFTNNTEFQYDPLAKRLRELSFLNSGISIKLHDERDNKE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG++ +++   +N++ I  +IF   T K       VE A+ W +     I  + N I 
Sbjct: 113 YEGGIRAFVEYLNKNKNPIHPKIFYFSTIKDDI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH  G R A+TR +  Y +      K  IS   DD     + ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKTKISATGDDAREGLIAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    R
Sbjct: 230 QTKDKLVSSEVKTAVETLMNEKLIEYLLENPTDAKIVVNKIIDAARAREAARRAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLGGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYDPDKLRYHSIIIMTDADVDGSHIRTLLLTFF 409

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           Y++M ++IE+ H+F+  PPL+++ +G +  Y  D+E  ++        G
Sbjct: 410 YRQMPEIIERGHVFIAQPPLYKVKKGKQEQYIKDDEAMEQYQISLALDG 458


>gi|28866796|dbj|BAC65176.1| DNA gyrase B subunit [Polaribacter filamentus]
          Length = 474

 Score =  333 bits (853), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 178/483 (36%), Positives = 273/483 (56%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALS+ L  TV +   ++ Q++S+G  L P++   +  +  
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSEHLTATVHKDGKLWQQEYSKGKALYPVKTIGET-DFN 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF PD  IF     F+   L    +  +YL+  +    +  +E  ++   P  E F
Sbjct: 60  GTVVTFLPDKSIFTQTTEFNYDTLASRMRELSYLNKGITITLTDKRETDDEGNFP-TEVF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           +   GL  +++     R  ++S I + + EK G     VE A+ +       + SY N I
Sbjct: 119 HSTEGLPEFIRYLDSTREQLTSTIISMEGEKNGIP---VEVAMVYNTSYAENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFA 380
            T EGGTH +G R  LT  +KKYA+ +   + +      DD       I+SV ++EP+F 
Sbjct: 176 NTHEGGTHLAGFRRGLTSTLKKYADDSGLLKNVKFEIAGDDFREGLTAIISVKVQEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + D    V  A+ +    YL +NP +A  +++ VI  +  R   RK RE+  
Sbjct: 236 GQTKTKLGNRDVTSAVSQAVSEMLTDYLEENPNDAKIIVQKVILAATARHAARKAREMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV
Sbjct: 296 RKTVMSIGGLPGKLSDCSETDPAQCEIFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR-----YEKVIIMTDADVDGAHIASL 554
             A   K+  N++I ++  ALG    ++     L      Y KV+IM DADVDG+HIA+L
Sbjct: 356 EKAMQHKVFENEEIKNMFTALGVSIGTEEDPRALNLSKVRYHKVVIMCDADVDGSHIATL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +++EQ ++++ +PPL+ + +G K  YA D+  +  ++ +      G   I
Sbjct: 416 ILTFFFRYMREMVEQGYIYIATPPLYLVKKGQKREYAWDDHQRDVLVHQMG----GSASI 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|254673484|emb|CBA08885.1| DNA gyrase subunit B [Neisseria meningitidis alpha275]
          Length = 698

 Score =  332 bits (852), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 182/503 (36%), Positives = 274/503 (54%), Gaps = 22/503 (4%)

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           +T LHAGGKFDN++Y+ISGGLHGVG+SVVNALSD + +T+ R       +F RG    PL
Sbjct: 1   MTVLHAGGKFDNNSYKISGGLHGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPL 60

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
                  +K+GT + F    + FG+   +    L K  +  ++L+  V    + +++   
Sbjct: 61  NVVGD-SDKKGTTVRFLASTETFGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD--- 115

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
                + E F   GG+  ++Q     ++ +  +IF    EK G    +VE A+ W +   
Sbjct: 116 ----GKHESFALSGGVAGFVQYMNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQ 168

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
             +  + N I   +GGTH + LR  +TR I  Y E  +   K  +    DD+      +L
Sbjct: 169 ESVQCFTNNIPQRDGGTHLTALRQVMTRTINNYIEANEVAKKAKVETAGDDMREGLTCVL 228

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV + +P+F+ QTK KLVS +    V   +      +L +NP EA  +   +++ +  R 
Sbjct: 229 SVKLPDPKFSSQTKDKLVSGEIGPVVNEVISQALTDFLEENPAEAKIITGKIVDAARARE 288

Query: 431 RRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK RE+ R+   +  L LPGKLADC +     +EL++VEGDSAGGSA Q R+R  QA+
Sbjct: 289 AARKAREITRRKGVMDGLGLPGKLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAI 348

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDG 548
           LPL+GKILNV  A  EK+  +Q++  L+ ALG     +    E LRY ++IIMTDADVDG
Sbjct: 349 LPLKGKILNVEKARFEKMLASQEVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDG 408

Query: 549 AHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           AHI +LLLTFFY++M +L+E+ ++++  PPL++   G +  Y  DE  K + L       
Sbjct: 409 AHIRTLLLTFFYRQMPELVERGYIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEK 468

Query: 609 KGKIEISRFKGLGEMLASQLKET 631
              I   R      +  ++L +T
Sbjct: 469 AKIISDGR-----TIEGAELADT 486



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 10/108 (9%)

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L++   G      +D +  +  L+      +  + I R+KGLGEM   QL ET MD   R
Sbjct: 601 LYKGENG------YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVR 654

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
            LL+V I   +       +    LMG + + R  FI+  A    ++  
Sbjct: 655 RLLKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 698


>gi|13517035|dbj|BAB40400.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04469]
          Length = 474

 Score =  332 bits (852), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 178/480 (37%), Positives = 273/480 (56%), Gaps = 18/480 (3%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+S VNALS  L  TV R+  I+ Q++ +G  + P++      + RGT 
Sbjct: 4   SYKVSGGLHGVGVSCVNALSTHLKATVYREGKIWEQEYEKGKAMYPVKGIGDTDD-RGTA 62

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           +TF PDP IF     ++   L    +  AYL+  +    +  ++  +K      E F+  
Sbjct: 63  VTFLPDPSIFQTTTEYNYDTLASRMRELAYLNKGITITLTDKRQKDDKG-EFVSETFHSE 121

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
            GLK +++    NR  I  E+ + + EK       VE A+ + +     + SY N I T 
Sbjct: 122 EGLKEFVRFLDGNRQPIIGEVISMEGEKNDIP---VEVAMIYNDSYAENLHSYVNNINTH 178

Query: 326 EGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           EGGTH +G R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F GQT
Sbjct: 179 EGGTHLAGFRRGLTSSLKKYADASGMLDKLKFEIAGDDFREGLTAIISVKVAEPQFEGQT 238

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKT 442
           KTKL + +    V  A+ +  + YL ++P +A  +++ VI  ++ R   +K RE+  RKT
Sbjct: 239 KTKLGNREVTSAVSQAVSEMVEIYLEEHPDDAKTIVQKVILAAQARHAAKKAREMVQRKT 298

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
            +    LPGKLADCS+      E+F+VEGDSAGG+AK  R+R+ QA+LPLRGKILNV  A
Sbjct: 299 VMSIGGLPGKLADCSETDPEACEVFLVEGDSAGGTAKMGRDRNFQAILPLRGKILNVEKA 358

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLT 557
              K+  N++I ++  ALG    ++   +      LRY+K++IM DADVDG+HIA+L+LT
Sbjct: 359 MQHKVFENEEIKNIFTALGVTIGTEEDSKALNLSKLRYKKIVIMCDADVDGSHIATLILT 418

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
           FF++ M +L+E  H+++ +PPL+ + +G K  YA  E+ + +   +      G   + R+
Sbjct: 419 FFFRYMRELVEGGHVYIATPPLYLLKKGKKMRYAWSEKERDEYNAQMG----GSASVQRY 474


>gi|10039311|dbj|BAB13316.1| DNA gyrase B subunit [Flexibacter flexilis]
          Length = 477

 Score =  332 bits (852), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 182/484 (37%), Positives = 271/484 (55%), Gaps = 17/484 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALS  L VTV R+  +F Q++S G PL  + +  K  +K 
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSTHLKVTVQREGKMFEQEYSIGKPLYSVREIGK-SDKH 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F PD  IF     +    +    +  ++L+  ++   +  +E  E    P  EEF
Sbjct: 60  GTTVEFHPDATIFSTT-EYKYETIATRLRELSFLNRGIRISLTDLREKDEND-NPITEEF 117

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTI 322
           +   GL  +++     R  +  E+   + +K       V+ A+ +     E   SY N I
Sbjct: 118 HSEAGLIEFVEYLDSTREKLIPEVIYMEGDK----VIPVQVAMHYNTSYSENVFSYVNNI 173

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH +G R ALTR +K YA+      K  I I  DD       ++SV + EP+F 
Sbjct: 174 NTIEGGTHVAGFRAALTRTLKGYADKEGMLDKVKIDIAGDDFREGLTAVISVKVAEPQFE 233

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + D    V   + D    +L ++P EA +++  VI  ++ R   RK RE+ +
Sbjct: 234 GQTKTKLGNSDVSGAVSTTVADILQTWLEEHPKEARQIVNKVILAAQARHAARKAREMVQ 293

Query: 441 KTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +   +    LPGKLADCS+  A   E+++VEGDSAGG+AKQ RNR+ QA+LPLRGKILNV
Sbjct: 294 RKNVLSGTGLPGKLADCSETDASLCEVYLVEGDSAGGTAKQGRNRAFQAILPLRGKILNV 353

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASL 554
             A   KI  N++I +++ ALG +            + LRY K+IIMTDADVDG+HI +L
Sbjct: 354 EKAQEYKIYENEEIKNMITALGVQFGKDGDEKALNMDKLRYHKIIIMTDADVDGSHIRTL 413

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIE 613
           +LTFF++ M  LIE  +L++  PPL+++ +G    Y   E+ +   ++E  K G+   + 
Sbjct: 414 ILTFFFRYMKQLIEHGYLYIALPPLYQVKKGKDFRYCWSEDQRDIAIKELAKEGREDSVH 473

Query: 614 ISRF 617
           + R+
Sbjct: 474 VQRY 477


>gi|161898002|gb|ABX80110.1| DNA gyrase subunit B [Streptomyces swartbergensis]
          Length = 483

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 178/486 (36%), Positives = 268/486 (55%), Gaps = 18/486 (3%)

Query: 62  PGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENH 121
           PGMYIG T E+ LHHL  EV+DN++DE +AGYA+ I+V++  +G + VVDNGRGIPV   
Sbjct: 1   PGMYIGSTGERGLHHLVQEVVDNSVDEALAGYADTIDVTILADGGVRVVDNGRGIPVGIV 60

Query: 122 PKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFS 181
           P    K  +E++LT LHAGGKF    Y +SGGLHGVG+SVVNALS ++ V +      ++
Sbjct: 61  P-SEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVSVVNALSTKVSVEIKTDGYRWT 119

Query: 182 QKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241
           Q +  G+P +PL K E   ++ GT +TF  DP IF     +    L +  Q  A+L+  +
Sbjct: 120 QDYKLGVPTAPLAKHEPT-DEHGTTVTFWADPDIFET-TDYSFETLSRRFQEMAFLNKGL 177

Query: 242 KTCWSCDKEI-----------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
           +   + ++E             ++    +   +++ GG+  +++     +          
Sbjct: 178 RINLTDERESAKATAGADEAGEDEKHEVKHVSYHYEGGIVDFVKYLNSRKGEAVHPTVID 237

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
              +    + ++E A+ W       + S+ N I T EGGTHE G R ALT  I KYA   
Sbjct: 238 LEAEDKDRQLSLEVAMQWNSGYTEGVYSFANIIHTHEGGTHEEGFRAALTSLINKYARDK 297

Query: 350 QN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
           +   ++  ++  DD+      I+SV + EP+F GQTKTKL + + +  V+  + +  + +
Sbjct: 298 RLLREKDDNLTGDDIREGLTAIISVKLSEPQFEGQTKTKLGNTEVKTFVQRVVYEHLNDW 357

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTEL 466
           L +NP EA  ++   I  +  R+  RK R++ R+   +    LPGKL+DC  N     E+
Sbjct: 358 LDRNPNEAADIVRKGIAAATARVAARKARDLTRRKGLLETASLPGKLSDCQSNDPTKCEI 417

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS 526
           FIVEGDSAGGSAK  RN   QA+LP+RGKILNV  A  ++I  NQ+I  ++ A G     
Sbjct: 418 FIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEKARIDRILQNQEIQAMISAFGTGVHE 477

Query: 527 QYREED 532
            +  E 
Sbjct: 478 DFDIEK 483


>gi|310781131|gb|ADP24041.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 453

 Score =  332 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 179/466 (38%), Positives = 261/466 (56%), Gaps = 17/466 (3%)

Query: 73  ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
            LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+
Sbjct: 1   GLHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEV 59

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
            LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + 
Sbjct: 60  ALTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTD 119

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
           LE   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  
Sbjct: 120 LEVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGK 177

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
           E       E F + GG+ ++++    N+ ++  E    + +        VE  + + +  
Sbjct: 178 E-------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNDSY 227

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369
              I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I
Sbjct: 228 NENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAI 287

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           +SV ++ P+F GQTKTKL + + +  VEN + D    +L +NP  A  ++E   + +  R
Sbjct: 288 VSVKLKNPQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAR 347

Query: 430 LRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
              RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSAK  RN   QA
Sbjct: 348 EAARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAKSGRNSRFQA 407

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
           +LPLRGKILNV  A  +KI +N++I  ++ ALG      +    L 
Sbjct: 408 ILPLRGKILNVEKARLDKILSNEEIRAMITALGTGVGDDFDISKLS 453


>gi|310781263|gb|ADP24107.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 453

 Score =  332 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 178/466 (38%), Positives = 260/466 (55%), Gaps = 17/466 (3%)

Query: 72  KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLE 131
             LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E
Sbjct: 1   TGLHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVE 59

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           + LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P +
Sbjct: 60  VALTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKT 119

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
            LE   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++ 
Sbjct: 120 DLEVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDG 177

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
            E       E F + GG+ ++++    N+ ++  E    + +        VE  + +   
Sbjct: 178 KE-------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNNS 227

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVG 368
               I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      
Sbjct: 228 YNENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTA 287

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           I+SV ++ P+F GQTKTKL + + +  VEN + +    +L +NP  A  ++E   + +  
Sbjct: 288 IVSVKLKNPQFEGQTKTKLGNSEMRSIVENVVTEKLTAFLEENPSVAKIIVEKATQAARA 347

Query: 429 RLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
           R   RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSAK  RN   Q
Sbjct: 348 REAARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAKSGRNSRFQ 407

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           A+LPLRGKILNV  A  +KI +N++I  ++ ALG      +    L
Sbjct: 408 AILPLRGKILNVEKARLDKILSNEEIRAMITALGTGVGDDFDISKL 453


>gi|40804952|gb|AAR91744.1| topoisomerase II [Trichomonas vaginalis]
          Length = 1458

 Score =  332 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 126/675 (18%), Positives = 251/675 (37%), Gaps = 75/675 (11%)

Query: 45  DASSIRILEGLEPVRMRPGMYIGGTDEK----------------------ALHHLFSEVI 82
                  L   E V  RP  YIG  + +                       L+ +F E++
Sbjct: 13  SDEQYVKLTHREHVLTRPDSYIGSIEPRECKMWVCNEDGKFEFREISYVPGLYKIFDEIL 72

Query: 83  DNAMDEVIAGYA-NLIEVSLDG-NGFLTVVDNGRGIPVENH---PKFPNKSTLEIILTTL 137
            NA D          I+  +D     ++V ++G+GI  +              E I + L
Sbjct: 73  VNAADNKQRDPPLTTIKGEVDPAQNRISVWNDGKGISTQKQFSPNDNCEYYIPEFIFSQL 132

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA--RQNTIFSQKFSRGIPLSPLEK 195
                +++   +++GG +G G  + N  S + H+ +    +   + Q  +  +      K
Sbjct: 133 LTSSNYNDKQEKVTGGRNGYGAKLANIFSKKFHINIYNADEGINYQQTITDNMTNIQPPK 192

Query: 196 KE-KVRNKRGTRITFRPDPKIF--GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
            +        T I+F PD + F            + +     A +  +VK  W+ ++   
Sbjct: 193 LKNGKGKGSYTEISFWPDLERFNLQTITKDHVDLIRRRVYDLADILPKVKIFWNGNQVPI 252

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
           +K      + +                +  +   +   K EK  T +  V  + +     
Sbjct: 253 KK-WEDYCKVYL---------------KEDVKPLVCEVKNEKGYTWKIGVAPSKSRE--- 293

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSV 372
            +  S+ N + T  GGTH   +   +T+ I  Y +  ++ + +      +       +  
Sbjct: 294 FQQISFVNCVATSNGGTHVDVVVNQITKYITDYLKNRRSGK-VETKPSVVKNFLYVFVDS 352

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
            +  P F  QTK +L     +   +  L D F   +++     T ++  V E +  + +R
Sbjct: 353 LVINPSFDSQTKERLTLDQKKLKDDCKLPDNFLDKILK-----TDIVALVTEYANFKEQR 407

Query: 433 RKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ---ARNRSNQAV 489
           +       K     +          +  +    L + EGDSA  +A        R    V
Sbjct: 408 KVANMKGTKKGRLIINKLEDANMAGKAESLKCTLILTEGDSAKATAVTGLATIGRDYYGV 467

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED----LRYEKVIIMTDAD 545
            PLRGK+LN     ++K+  N +I ++++ +G     +Y  +D    LRY  ++IM D D
Sbjct: 468 FPLRGKLLNTRDISAKKLSENDEIQNIIKIMGLDPMEKYENDDSMKRLRYGSIMIMADQD 527

Query: 546 VDGAHIASLLLTFFYQEMYDLI-EQKHLFLISPPLFRITQGTKS---VYAHDEEHKQKIL 601
           VDG+HI  L++ F +    +L+ ++  +     P+ ++T+G      +         +  
Sbjct: 528 VDGSHIKGLIINFVHSMWPNLLKKRNFITEFITPIVKVTKGNNKKGAISFFTIPEFSQWK 587

Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
                +     ++  +KGL    A + KE   + +K    +V I  + N  +    +  K
Sbjct: 588 A--ANNNGKGYKMKYYKGLATSTAEEAKEYFSNISKH--KKVFIYTNENDEERINLAFAK 643

Query: 662 LMGTKADERFKFIQE 676
               +AD+R  ++ +
Sbjct: 644 ---KRADDRKNWLAQ 655


>gi|19909719|dbj|BAB87055.1| DNA gyrase subunit B [bacterium PC3]
          Length = 474

 Score =  332 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 169/483 (34%), Positives = 275/483 (56%), Gaps = 26/483 (5%)

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           HH+  EV DNA+DE +AG+ +L+ + L+ +G ++V DNGRGIPV+ H K    S  E+I+
Sbjct: 1   HHMVFEVSDNAIDEALAGHCDLVLIELNADGSVSVEDNGRGIPVDLH-KEEGVSAAEVIM 59

Query: 135 TTLHAGGKF----DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           T LHAGGKF    D++ Y++SGGLHGVG+SVVNALS+ L + + R       +F  G  +
Sbjct: 60  TQLHAGGKFENTSDDNAYKVSGGLHGVGVSVVNALSEWLELVIWRDGKEHWMRFEHGDAV 119

Query: 191 SPLEKKEKVRN----------KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
             L                  K+GTR+TF+     F +   FD  +L    +  A+L+  
Sbjct: 120 ESLRVVGDAPPVESNGDENGLKKGTRVTFKASEDTFKNVTEFDFDKLEHRYRELAFLNSG 179

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
           V+     ++     +  P + + ++ GG+  +++    N+  + +E  +   EK G    
Sbjct: 180 VRIKLRDNR-----HEEPLEHDLFYEGGIAAFVKYLDRNKQPLVAEPISVSAEKDGI--- 231

Query: 301 TVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISI 357
            ++ A+ W +     + ++ N I   +GGTH +  R ALTR +  YA  +    K  +++
Sbjct: 232 GIDVALQWNDSYYENVLTFTNNIPQRDGGTHLAAFRAALTRTLNNYATASGLMKKEKVTL 291

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             +D+      I+SV + +P+F  QTK KLVS + ++ +E+ + +    +L +NP +A  
Sbjct: 292 SGEDMREGLTAIVSVKLPDPKFGSQTKDKLVSSEVRQPLESLMGEKMGEWLEENPNDAKA 351

Query: 418 LLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           +++ +I+ +  R   R+ RE++RK A+    LPGKLADC        ELF+VEGDSAGGS
Sbjct: 352 IIQKIIDAAAAREAARRAREMSRKGAMSVASLPGKLADCQDRNPANCELFLVEGDSAGGS 411

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AKQ R+R  QA+LPL+GKILNV  A  ++I +++++  L+QA+G   R ++  + LRY K
Sbjct: 412 AKQGRDRKTQAILPLKGKILNVERARFDRIISSKEVGTLIQAMGTGLRDEFTLDKLRYHK 471

Query: 538 VII 540
           ++I
Sbjct: 472 IVI 474


>gi|9971341|dbj|BAB12477.1| DNA gyrase B subunit [Persicobacter diffluens]
          Length = 477

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 185/484 (38%), Positives = 281/484 (58%), Gaps = 17/484 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVA-RQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           D  TY++SGGLHGVG+S VNALS ++ VTV  +   I+ Q + +G P +P+    +  +K
Sbjct: 1   DKDTYKVSGGLHGVGVSCVNALSKDMKVTVHSKDGKIYEQSYKKGSPQAPVAPVGET-DK 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT + F PD +IF     +   R+    +  A+L+  +       +++ E+   P  E 
Sbjct: 60  TGTTVWFMPDDEIFT-HHEYVWDRVANRLRELAFLNAGITIVLEDLRDVDEQG-NPLSET 117

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNT 321
           FY  GG+K +++   +++  +  E    + EK       V+ A+++     E   SY N 
Sbjct: 118 FYSEGGIKEFVEYLDDSKEKLIDEAVYIEGEKANIP---VQVAMSYNTSFSENVVSYVNN 174

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEF 379
           I T EGGTH SG R ALTR +K YA+ +    K  + I  DD       ++SV + EP+F
Sbjct: 175 INTHEGGTHVSGFRRALTRTLKNYADKSGLLDKVKVDISGDDFREGLTAVISVKVAEPQF 234

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN 439
            GQTKTKL + DA   V++A+ D  + YL +NP  A ++++ VI  ++ R   RK RE+ 
Sbjct: 235 EGQTKTKLGNSDAVGAVDSAVSDMLNTYLEENPRSAKQIVQKVILAAQARHAARKAREMV 294

Query: 440 RKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
           ++   +    LPGKLADCS   A  +EL++VEGDSAGGSAKQ R R  QA+LPLRGKILN
Sbjct: 295 QRKNVMSSTSLPGKLADCSSKDAALSELYLVEGDSAGGSAKQGREREYQAILPLRGKILN 354

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYR-----EEDLRYEKVIIMTDADVDGAHIAS 553
           V  A   KI +N++I +++ A+G R            E LRY K++IMTDADVDG+HI +
Sbjct: 355 VEKAQEHKIYDNEEIKNMITAMGVRFGKDGDEKALDMEKLRYHKIVIMTDADVDGSHIRT 414

Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613
           L+LTFF++ M DLI+  ++++  PPL+++ +G K  Y   EE +   ++E     + K+ 
Sbjct: 415 LILTFFFRYMRDLIDNGYVYIAQPPLYQVKKGAKQKYCWTEEDRLLAIQEMGGD-ENKVS 473

Query: 614 ISRF 617
           + R+
Sbjct: 474 VQRY 477


>gi|30680397|ref|NP_850762.1| DNA topoisomerase, ATP-hydrolyzing, putative / DNA topoisomerase
           II, putative / DNA gyrase, putative [Arabidopsis
           thaliana]
 gi|332003318|gb|AED90701.1| DNA gyrase subunit B [Arabidopsis thaliana]
          Length = 519

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 146/420 (34%), Positives = 233/420 (55%), Gaps = 17/420 (4%)

Query: 9   FSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGG 68
           F      SQ   ++   S     + A    + S  Y +  I++LEGL+PVR RPGMYIG 
Sbjct: 56  FQLTSVLSQRLIQRNAISSRFLSTEASQETTTSKGYSSEQIQVLEGLDPVRKRPGMYIGS 115

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T  + LHHL  E++DNA+DE  AGYA+ ++V L  +G ++VVDNGRGIP + HP    KS
Sbjct: 116 TGSRGLHHLVYEILDNAIDEAQAGYASKVDVVLHADGSVSVVDNGRGIPTDLHP-ATKKS 174

Query: 129 TLEIILTTLHAGGKFDNST--YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           +LE +LT LHAGGKF  ++  Y +SGGLHGVG+SVVNALS+ L V+V R      Q +SR
Sbjct: 175 SLETVLTVLHAGGKFGGTSSGYSVSGGLHGVGLSVVNALSEALEVSVWRDGMEHKQNYSR 234

Query: 187 GIPLSPLEKKE---KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           G P++ L  +    + +  +GT I F PD ++F     FD   +    +  A+L+ +V  
Sbjct: 235 GKPITTLTCRVLPLESKGTKGTSIRFWPDKEVFTTAIEFDHNTIAGRIRELAFLNPKVTI 294

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
               + +  EK    +  E+ F GGL  Y+     +++ I   +      ++  +  TV+
Sbjct: 295 SLKKEDDDPEKT---QYSEYSFAGGLTEYVSWLNTDKNPIHDVLGF----RREINGATVD 347

Query: 304 WAIAWCE--ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359
            A+ WC    +  +  Y N+I T +GGTH  G++ +LTR +   A+ ++   ++ IS+  
Sbjct: 348 VALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNTLAKKSKTVKEKDISLSG 407

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           + +      I+SV +  PEF GQTKT+L + + ++ V+ ++++    +L  +P     ++
Sbjct: 408 EHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEFLELHPDILESII 467


>gi|9971357|dbj|BAB12485.1| DNA gyrase B subunit [Salegentibacter salegens]
          Length = 474

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 187/483 (38%), Positives = 283/483 (58%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALS  L  TV R N I+ Q++ +G P+ P++   +     
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSSTLKATVYRDNQIWEQEYEKGKPMYPVKPAGET-ELN 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT ITF+PD  IF     ++   L    +  A+L+  ++   +  +E+ +K      E F
Sbjct: 60  GTVITFKPDSSIFQQSVDYNYDTLASRMRELAFLNKGIQITLTDKREVNDKG-EYLSERF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTI 322
           Y   GLK +++    NR  I S +   ++EK       VE A+ +     E    Y N I
Sbjct: 119 YSEEGLKEFIKFLDGNREPIISHVIAMESEKNDIP---VEVAMIYNTSFSENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KKYA+ +    K    I+ DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLSGFRRGLTTTLKKYADASGMLDKLKFEIVGDDFREGLTAIISVKVAEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + +    V  ++ +  ++YL +NP +A  +++ VI  ++ R   +K R++  
Sbjct: 236 GQTKTKLGNREVTSAVSQSVSEMLENYLEENPNDAKTIIQKVILAAQARNAAKKARDMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKTA+    LPGKL+DCS+     +E+F+VEGDSAGG+AKQ R+R  QA+LPLRGKILNV
Sbjct: 296 RKTAMSIGGLPGKLSDCSEQDPVQSEVFLVEGDSAGGTAKQGRDRRFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASL 554
             A + ++ +N++I ++  ALG    ++        + LRY KV+IM DADVDG+HI +L
Sbjct: 356 EKAMTHRVFDNEEIKNIYTALGVTIGTEEDSKALNTDKLRYHKVVIMCDADVDGSHIETL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFFY+ M +LIE  H+F+ +PPL+ + +G++  YA  EE + +I E +     G ++I
Sbjct: 416 ILTFFYRYMKELIEGGHIFIATPPLYLVKKGSRKRYAWSEEERDEIAESYS----GGVQI 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|301120494|ref|XP_002907974.1| DNA topoisomerase 2 DNA gyrase B [Phytophthora infestans T30-4]
 gi|262103005|gb|EEY61057.1| DNA topoisomerase 2 DNA gyrase B [Phytophthora infestans T30-4]
          Length = 1329

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 126/649 (19%), Positives = 232/649 (35%), Gaps = 52/649 (8%)

Query: 72  KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGNG-------FLTVVDNGRGIPVENHPK 123
            AL+ +F E+I NA+D  +       ++V ++          +++V ++G+GIPV+ H K
Sbjct: 26  PALYKIFDEIIVNAVDNKVRDPSMRHLDVIIEPGSKANGYRPWISVYNDGKGIPVKFH-K 84

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV------TVARQN 177
                  E++L  L  G  FD++   ++GG HG G  + N  S E  V         R  
Sbjct: 85  TEKVYVPELVLGHLLTGSNFDDTAARLTGGRHGYGAKLTNIFSKEFVVETGDTSMGLRYK 144

Query: 178 TIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAY 236
            ++     +RG P       +  ++      +   +              L K     A 
Sbjct: 145 QVWHNNMRTRGEPEITEFSGKDAKDFTKVSFSPDLEKFEMEKLTASMTRVLKKRVYDVAG 204

Query: 237 LSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG 296
               V+   +  K     +    K   Y           K    S  ++   +     + 
Sbjct: 205 CLSDVQVTLNGKKLPISGFESYIKTFRYSTTNNPVSKTAKPSKDSDDAASSGSDYIYSRV 264

Query: 297 THRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
             R  +    +  +      S+ N +    GG+H   +   + R + ++    +    +S
Sbjct: 265 NKRWKIGVLPS--DVGFVQVSFVNGMSALRGGSHVGYVSDQICRRVAEHV--NKKFPELS 320

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           + +  +       ++  I  P F  Q K  + S          L +          +  +
Sbjct: 321 VSTAQVKPHMAIFINCQIENPTFDSQMKEFMTSRPPTFGSTCVLSERLLK----LVLSDS 376

Query: 417 KLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS---QNIAHGTELFIVEGDS 473
            ++E V++ +  R R    ++V+   A        KL D +      +    L + EGDS
Sbjct: 377 GIVERVVQSARARQRAALLKKVSSTRAKSSSVNVPKLEDANLAGGARSSECSLILTEGDS 436

Query: 474 AGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR- 529
           A   A        R    V PLRGK+LNV  A   ++  N +   L   LG R    Y  
Sbjct: 437 AKALAVAGLAVVGRDQYGVFPLRGKLLNVRDATVAQLGKNAEFAHLCTILGLRMDEHYGT 496

Query: 530 ---EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRIT-- 583
               + LRY +VI MTD D DG+HI  LL   F+    +L+++   +     P+ +++  
Sbjct: 497 EEARQKLRYGRVIAMTDQDHDGSHIKGLLFNLFHTFWPELLKEGGFISEFITPIIKVSPT 556

Query: 584 -------QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
                  +G ++          +              I  +KGLG   +++ +E   D +
Sbjct: 557 SKRVGTERGLETRRFFSLPEYFEWKASIDSADLKHYVIKYYKGLGTSTSAEGREYFSDLD 616

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI---QERASFID 682
              +         N         +K    +A +R  ++      AS++D
Sbjct: 617 NHLVDFH--WSGDNDGDALDMVFSKA---RAADRKAWLLNEYSPASYLD 660


>gi|13516981|dbj|BAB40373.1| DNA gyrase B subunit [Persicobacter diffluens]
 gi|13516983|dbj|BAB40374.1| DNA gyrase B subunit [Persicobacter diffluens]
          Length = 477

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 187/484 (38%), Positives = 281/484 (58%), Gaps = 17/484 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVA-RQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           D  TY++SGGLHGVG+S VNALS ++ VTV  +   I+ Q + +G P +P+    +  +K
Sbjct: 1   DKDTYKVSGGLHGVGVSCVNALSKDMKVTVHSKDGKIYEQSYKKGSPQAPVAPVGET-DK 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT + F PD +IF     +   R+    +  A+L+  +       +++ E+   P  E 
Sbjct: 60  TGTTVWFMPDDEIFT-HHEYVWDRVANRLRELAFLNAGITIILEDLRDVDEQG-NPLSET 117

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNT 321
           FY  GG+K +++   +++  +  E    + EK       V+ A+++     E   SY N 
Sbjct: 118 FYSEGGIKEFVEYLDDSKEKLIDEAVYIEGEKANIP---VQVAMSYNTSFSENVVSYVNN 174

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEF 379
           I T EGGTH SG R ALTR +K YA+ +    K  + I  DD       ++SV + EP+F
Sbjct: 175 INTHEGGTHVSGFRRALTRTLKNYADKSGLLDKVKVDISGDDFREGLTAVISVKVAEPQF 234

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV- 438
            GQTKTKL + DA   V++A+ D  + YL +NP  A ++++ VI  ++ R   RK RE+ 
Sbjct: 235 EGQTKTKLGNSDAVGAVDSAVSDMLNTYLEENPRSAKQIVQKVILAAQARHAARKAREMV 294

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK  +    LPGKLADCS   A  +EL++VEGDSAGGSAKQ R R  QA+LPLRGKILN
Sbjct: 295 QRKNVMSSTSLPGKLADCSSKDATISELYLVEGDSAGGSAKQGREREYQAILPLRGKILN 354

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYR-----EEDLRYEKVIIMTDADVDGAHIAS 553
           V  A   KI +N++I +++ A+G R            E LRY K++IMTDADVDG+HI +
Sbjct: 355 VEKAQEHKIYDNEEIKNMITAMGVRFGKDGDEKALDMEKLRYHKIVIMTDADVDGSHIRT 414

Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613
           L+LTFF++ M DLI+  ++++  PPL+++ +G K  Y   EE +   ++E     + K+ 
Sbjct: 415 LILTFFFRYMRDLIDNGYVYIAQPPLYQVKKGAKQKYCWTEEDRILAIQEMGGD-ENKVS 473

Query: 614 ISRF 617
           + R+
Sbjct: 474 VQRY 477


>gi|310781169|gb|ADP24060.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 455

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 178/468 (38%), Positives = 261/468 (55%), Gaps = 17/468 (3%)

Query: 71  EKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTL 130
              LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +
Sbjct: 1   SSGLHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAV 59

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+ LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P 
Sbjct: 60  EVALTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPK 119

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           + LE   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++
Sbjct: 120 TDLEVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERD 177

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       E F + GG+ ++++    N+ ++  E    + +        VE  + + +
Sbjct: 178 GKE-------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYND 227

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+     
Sbjct: 228 SYNENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLT 287

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            I+SV ++ P+F GQTKTKL + + +  VEN + D    +L +NP  A  ++E   + + 
Sbjct: 288 AIVSVKLKNPQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAAR 347

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSAK  RN   
Sbjct: 348 AREAARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAKSGRNSRF 407

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
           QA+LPLRGKILNV  A  +KI +N++I  ++ ALG      +    + 
Sbjct: 408 QAILPLRGKILNVEKARLDKILSNEEIRAMITALGTGVGDDFDISKVS 455


>gi|10039351|dbj|BAB13328.1| DNA ryrase B subunit [Microscilla sericea]
          Length = 479

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 184/485 (37%), Positives = 280/485 (57%), Gaps = 17/485 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVA-RQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           D  +Y++SGGLHGVG+S VNALS  L  TV  R   I+ Q++S G P +P++   +  + 
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSSMLRATVYSRDGKIYEQEYSEGFPKAPVKPVGET-DI 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT+I F+PD  IF +   F    +    +  AYL+  +K      +E  E+    E E+
Sbjct: 60  TGTKIQFKPDETIFAESV-FKYETVASRLRELAYLNAGIKIKLQDHREKDEEGNSKE-ED 117

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNT 321
           F+  GGL  ++Q    +R  +  E    + EK       V+ A+ +     E   SY N 
Sbjct: 118 FFSEGGLLEFVQYLDVSREKLIPEPIYMEGEKNNVP---VQVALNYNTSYSENVVSYVNN 174

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEF 379
           I T EGGTH SG R ALTR +K YA+ +    K+ I I  DD       I+SV + EP+F
Sbjct: 175 INTIEGGTHVSGFRRALTRTLKSYADKSGLLEKQKIEITGDDFREGLTAIISVKVAEPQF 234

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN 439
            GQTKTKL + D    VE+ + +   ++L +NP  A  +++ VI  ++ R   +K RE+ 
Sbjct: 235 EGQTKTKLGNSDVMGAVESCVSETLQYFLEENPKAAKTIVQKVILAAQARNAAKKAREMV 294

Query: 440 RKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
           ++   +    LPGKLADCS+      E+++VEGDSAGGSAKQ R+R+ QA+LPL+GKILN
Sbjct: 295 QRKNVMSGSGLPGKLADCSEKDPALCEIYLVEGDSAGGSAKQGRDRNFQAILPLKGKILN 354

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIAS 553
           V  A   KI +N +I +++ ALG R  ++  E     + LRY K++IMTDADVDG+HI +
Sbjct: 355 VEKAQEHKIYDNDEIKNILTALGVRFGTEDDEKALNLDKLRYHKIVIMTDADVDGSHIRT 414

Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKI 612
           L+LT F++ M +LI+  ++++  PPL+ I +G    Y   E+ + ++++E    G +G +
Sbjct: 415 LILTLFFRYMRELIDMGYVYIAQPPLYLIKRGKTERYVFTEDERVEVVKEISPDGTEGAV 474

Query: 613 EISRF 617
            + R+
Sbjct: 475 HLQRY 479


>gi|219121754|ref|XP_002181225.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407211|gb|EEC47148.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1165

 Score =  331 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 138/701 (19%), Positives = 245/701 (34%), Gaps = 81/701 (11%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTD------------------EKALHH---LFS 79
            D Y          LE V +RP MY+G  +                  E+ L     +F 
Sbjct: 2   EDQYSRK-----TPLEHVLLRPSMYVGSNEKAQPIACWVPDPIPTPPTEELLMKTTSVFD 56

Query: 80  EVIDNAMDEVIAGY--ANLIEVSLDG-----NGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
           E++ NA D +         I+V +D      + F+ V ++G+GIPV+ H K       E+
Sbjct: 57  EILVNAADNLQRHPDSCTRIDVIIDPGSDNRDPFIRVRNDGKGIPVQVHQK-EGMYVPEM 115

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT--IFSQKFSRGIPL 190
           +   L  G  FD++   ++GG HG G  + N  S    V          + Q +S  +  
Sbjct: 116 LFGHLLTGSNFDDNEKRLTGGRHGFGAKLTNIFSKSFTVETLDSRKRLKYRQTWSSNMTN 175

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +   +  +V           P          F          + A    +      C + 
Sbjct: 176 ASSPEIVEV-----------PADATDYTCVSFVPDVARLTNDASALSISKEDYALMCRRV 224

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
           +        +       G+   + +  +   L   +            R TV   ++   
Sbjct: 225 LDVAGCSAGRLR-VTLNGVDVTMGSFPDYARLYRKQDSLPVCFDAINSRWTVGVGLSETG 283

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
               + S+ N + T  GGTH + +   + + I++  E T  +         +       +
Sbjct: 284 SFE-MVSFVNGMATSRGGTHVNSILQQVIKKIQEKIEKTDPELVQMASQGVIRRHLFVSV 342

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL-VQNPIEATKLLEWVIERSEER 429
           +  I  P F  Q K  L S  A      +L + F   +          ++E +   ++ R
Sbjct: 343 AALIENPTFDSQMKECLTSSPADFGSSFSLSESFIKSVLQSEEEGGPGIVEEIRRAAQSR 402

Query: 430 LRRRKQREVNRKTAIRKLRLPGKLADCSQ---NIAHGTELFIVEGDSAGGSAK---QARN 483
            +    + +  KT+ R+L    KL D             L + EGDSA   A    +   
Sbjct: 403 QQATLLKVIGGKTSKRQLLSIPKLEDAHHAGTKSGSECTLILTEGDSAKALAVAGLEVIG 462

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY----REEDLRYEKVI 539
           R+   V PLRGK+LNV  A   ++  N ++  L   +G      Y        LRY KV+
Sbjct: 463 RARYGVFPLRGKLLNVREAAVSQMAKNAEVTALCAIIGLDFDKTYETIEERRKLRYGKVM 522

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIE-------------QKHLFLISPPLFRITQGT 586
           +MTD D DG+HI  L++ FF     +L++                L     PL + ++ +
Sbjct: 523 LMTDQDTDGSHIKGLVMNFFRYFWPNLLKPPVDLQVNDEDETPPFLSSFVTPLLKASKKS 582

Query: 587 K---SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRV 643
               ++  +     +K     +     K  +  +KGLG    ++ +E     N     R 
Sbjct: 583 SKTGTLSFYSMAEYKKWRGSIEAEDFKKWTVKYYKGLGTSTPAEAREYFSAFNDHF--RP 640

Query: 644 EINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
            +       +      +   G +A +R  +I +      ++
Sbjct: 641 FLWNSDIDGELLDMVFD---GERAADRRAWILDVYDETSNL 678


>gi|13517015|dbj|BAB40390.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04452]
          Length = 474

 Score =  331 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 177/483 (36%), Positives = 271/483 (56%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALS  L  TV R   I+ Q++ RG  L P++      +  
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSMHLKATVHRDGKIWEQEYERGKTLYPVKTVGD-SDIA 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF+PDP+IF     ++   L    +  AYL+  +    +  +   E+      E F
Sbjct: 60  GTIVTFKPDPEIFQQTLEYNYDTLASRLRELAYLNKGITVVLTDLRHKDEEG-AFISETF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           +   GL  ++Q     R  +   + + + EK G     VE A+ +       + SY N I
Sbjct: 119 HSEEGLTEFVQYLDATREPLMQTVISFEGEKNGVP---VEVAMIYNTSYAENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KK+A+ +    K    +  DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLSGFRRGLTHTLKKFADNSGMLDKLKFDVSGDDFRERINSIISVKVAEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + +   +V  A+ +    YL ++P +A  +++ VI  ++ R   +K RE+  
Sbjct: 236 GQTKTKLGNREVSASVSQAVSEMLTDYLEEHPDDAKTIVQKVILAAQARHAAQKAREMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV
Sbjct: 296 RKTVMSIGGLPGKLSDCSEQDPTKCEVFLVEGDSAGGTAKQGRDRAFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASL 554
             A   K+  N++I ++  ALG    ++   +      LRY K++IM DAD+DG+HIA+L
Sbjct: 356 EKAMQHKVFENEEIRNIFTALGVTIGTEEDSKALNLSKLRYHKIVIMCDADIDGSHIATL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +L+E  H+++ +PPL+ + +G K  YA ++  + +I E F       +  
Sbjct: 416 ILTFFFRYMRELVENGHVYIATPPLYLVKKGQKKQYAWNDAERDEIAESFG----YSVNS 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|6939879|dbj|BAA90676.1| DNA gyrase subunit B [Weeksella virosa]
          Length = 476

 Score =  331 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 187/483 (38%), Positives = 281/483 (58%), Gaps = 16/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  TY++SGGLHGVG+S VNALS+ L   V +    + Q++ +G PL  +++     +K 
Sbjct: 1   DKDTYKVSGGLHGVGVSCVNALSNHLTAEVFKNGKHYIQEYEKGKPLYDVKQVGDT-DKS 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF PD  IF +   ++   L    +  +YL+  +    + ++   EK   P  E F
Sbjct: 60  GTTVTFTPDNTIFNEL-EYNFNTLANRLRELSYLNKGITITLTDERVKDEKG-EPLLEVF 117

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTI 322
           +  GGLK +++    NR  I   +   + E+ G     VE A+ +     E    Y N I
Sbjct: 118 HSDGGLKEFVEFIDGNREAIMDNVICMEGERDGIP---VEVAMRYNTSYNENLHSYVNNI 174

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH +G R ALTR +KKYA+   N  K  + I+ DD       I+SV + EP+F 
Sbjct: 175 NTHEGGTHLAGFRRALTRTLKKYADENFNLTKEKVEIVGDDFREGLTAIISVKVMEPQFE 234

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVN 439
           GQTKTKL + +    V+  + +   ++L +NPIEA  +++ VI      +  ++ +  V 
Sbjct: 235 GQTKTKLGNSEVSGAVDKIVSEMLTNFLEENPIEAKIIVDKVILAAKARQAAKKAREMVQ 294

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK  +    LPGKLADCS      +E+F+VEGDSAGG+AKQ R+R  QA+LPLRGKILNV
Sbjct: 295 RKNPMGGSGLPGKLADCSSRNPEESEIFLVEGDSAGGTAKQGRDRHFQAILPLRGKILNV 354

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASL 554
             A + K+ +N++I ++  ALG    ++          LRY KV+IMTDADVDG+HIA+L
Sbjct: 355 EKAMAHKVLDNEEIKNIYTALGVSIGTEEDSKALNISKLRYHKVVIMTDADVDGSHIATL 414

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +LIE  H+++ +PPL+ + +G K+ YA  EE ++ ++E+    GKG + I
Sbjct: 415 ILTFFFRYMKELIENGHIYIATPPLYLVKKGNKAEYAWGEEEREALVEKLAPDGKG-VTI 473

Query: 615 SRF 617
            R+
Sbjct: 474 QRY 476


>gi|10281012|dbj|BAB13747.1| type II DNA topoisomerase [Kluyveromyces marxianus]
          Length = 777

 Score =  331 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 131/635 (20%), Positives = 243/635 (38%), Gaps = 47/635 (7%)

Query: 72  KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKST 129
             L  +F E++ NA D  +       I+V+++     + V ++G+GIPVE H K      
Sbjct: 13  PGLFKIFDEILVNAADNKVRDPSMKKIDVTINQEENLIEVRNDGKGIPVEIHEK-EGIYI 71

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ--KFSRG 187
            E+I   L     +D+   +++GG +G G  V N  S E  +  A  +       K+   
Sbjct: 72  PEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKVCNIFSTEFILETADPSKGQKYVQKWENN 131

Query: 188 IPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDK--AGFDAARLLKMTQSKAYLSGRVKTC 244
           + +         +     T+++FR D + F  +         + +           V   
Sbjct: 132 MSVCHPPSITSYKRGPSYTKVSFRADLQRFNMEKLDDDIVGVMRRRVYDINGSVRDVNVS 191

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
            +      + +    +        +K     +L N    + E                E 
Sbjct: 192 LNGKPLKIKNFKNYVELYLKSLEKIKLNRLQELTNPDEPAQEPTNIPAILYEKINDRWEI 251

Query: 305 AIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMI 364
           A A  E + +  S+ N+I T  GGTH + +   + + +         K+  SI    +  
Sbjct: 252 AFAVSENSFQQISFVNSIATTSGGTHVNYVTDQIVKKVSD----RLKKQKKSIKPFQIKN 307

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           +    ++  I  P F  QTK +L +       +  + + F + +++  + AT++ +   E
Sbjct: 308 NMFIFINCLIENPAFTSQTKEQLTTRVKDFGSKCEVPNDFVNKVMKTDL-ATRIFDIADE 366

Query: 425 RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA--- 481
            +E++L++      NR T   KL    K         +   L + EGDSA   A      
Sbjct: 367 NAEKQLKKTDGSRKNRITEYPKLEDANK---AGTKEGYKCTLVLTEGDSALSLAVAGLAV 423

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVII 540
             R      PLRGK+LNV  A  ++I  N +I  + + +G + + +Y +   LRY  + I
Sbjct: 424 VGRDYYGCFPLRGKMLNVRDATPDQITKNAEIQAIKKIMGLQHKKRYEDATSLRYGHITI 483

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLI----------SPPLFRITQGTKSV 589
           MTD D DG+HI  L++ F       L++    L              P         +++
Sbjct: 484 MTDQDHDGSHIKGLIINFLESSFPGLLDIPGFLIEFITPIIKITITRP-------KKQTI 536

Query: 590 YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDL 649
             ++    +K  EE  +  K   +   +KGLG     + +E     +        +  D 
Sbjct: 537 SFYNMPDYEKWREE--ESHKYTWKQKYYKGLGTSTQQEAREYFSQLDLHLKKFHALQGD- 593

Query: 650 NSLKDTQDSINKLMGTKADERFKF--IQERASFID 682
              +    + +K    KAD+R ++  + E  + +D
Sbjct: 594 -DCQLIDLAFSK---KKADDRKEWLKLYEPGTVLD 624


>gi|19909597|dbj|BAB86994.1| DNA gyrase subunit B [Halomonas cupida]
          Length = 454

 Score =  331 bits (847), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 170/464 (36%), Positives = 256/464 (55%), Gaps = 17/464 (3%)

Query: 73  ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
            LHH+  E++DN++DE +AG+   I V +  +  +TV DNGRGIP + H +    S  E+
Sbjct: 1   GLHHMVFELVDNSIDEALAGHCTEIRVIIHPDESVTVSDNGRGIPTDIHEE-EGVSAAEV 59

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
           I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+EL +T+ R   +  Q +  G+P +P
Sbjct: 60  IMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELKLTIWRAGLVHEQIYRHGVPQAP 119

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
           L    +     G+R+ FRP P+ F +   F    L K  +  ++L+  V      ++   
Sbjct: 120 LGVVGQTEK-TGSRVHFRPSPETFAN-IEFHFDILAKRLRELSFLNSGVAIRLLDERSGK 177

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
           E       E F++ GGLK ++     N+++++         + G     VE A+ W +  
Sbjct: 178 E-------ELFHYEGGLKAFVDHLNTNKTVLNPVFHFNAEREDGV---AVEVAMQWNDTF 227

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGI 369
              I  Y N I   +GGTH +G R ALTR +  Y E     +        DD       I
Sbjct: 228 AENIFCYTNNIPQRDGGTHLAGFRAALTRTLNHYIEAEGLLKKAKVATSGDDAREGLTAI 287

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEE 428
           +SV + +P+F+ QTK KLVS + +  VE  L   F  YLV+ P EA  ++  +++     
Sbjct: 288 ISVKVPDPKFSSQTKDKLVSSEVKTAVEQELGRLFSEYLVEKPNEAKAIVNKMLDAARAR 347

Query: 429 RLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
              R+ +    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ R+R  QA
Sbjct: 348 EAARKARDMTRRKGALDIAGLPGKLADCQEKDPSLSELYLVEGDSAGGSAKQGRDRRTQA 407

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           +LPL+GKILNV  A  +K+ ++ ++  L+ ALGC    +    +
Sbjct: 408 ILPLKGKILNVEKARFDKMLSSAEVGTLITALGCGIGREEFNPE 451


>gi|120406839|ref|YP_956668.1| DNA topoisomerase [Mycobacterium vanbaalenii PYR-1]
 gi|119959657|gb|ABM16662.1| DNA topoisomerase (ATP-hydrolyzing) [Mycobacterium vanbaalenii
           PYR-1]
          Length = 677

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 162/681 (23%), Positives = 268/681 (39%), Gaps = 53/681 (7%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY---ANLIEV 99
           +Y+A+ I  L+ ++  R+RP + +G      L+    E++DNA++E +A      + + +
Sbjct: 2   SYNAADITELDDVQHTRLRPAVNLG---LDVLNTALRELVDNAIEE-VADPSHGGSTVTI 57

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD--NSTYEISGGLHGV 157
           +L  +G ++V D+GRG+PV++ P    K+ +   L T  AGGKF           GL+G+
Sbjct: 58  TLHADGSVSVADDGRGLPVDSDP-VTGKNGIVKTLGTARAGGKFSAHTDAASTGAGLNGI 116

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIP----------------LSPLEKKEK--- 198
           G +    +S    VTV R    + Q F  G P                    + +     
Sbjct: 117 GAAAAVFISARTDVTVRRAGKTYLQSFGGGYPGVFEGRDFDPNAPFTRADTQKLRGSGNR 176

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +  GT +    D  +  D        LL    + A +S  V      +    E+    
Sbjct: 177 KPDAHGTTVRILFDAAVVPDSTIDVGEVLL-RAHAAARMSPGVHLVVVDEGWPGEEIPPA 235

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTG----KTEKKGTHRGTVEWAIAWCEENPE 314
             E F  P G  T L             +            G       W++      P 
Sbjct: 236 LLEPFSGPWGTDTLLDLMCTAAGTPLPGVRAVVEGRGEYTTGRGPTPFRWSLTAGPAEPA 295

Query: 315 ITS-YCNTILTDEGGTHESGLRVALTRGIKKYAELTQN----KRAISIISDDLMISAVGI 369
             + +CNT+ T  GG+H +     L+  +   A   ++    K        D        
Sbjct: 296 TVAAFCNTVRTPGGGSHLTAAVKGLSEALADRASRIRDLGLAKGEDGPEPQDFAAVTALA 355

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ--NPIEATKLLEWVIERSE 427
           +     +  +  Q KT + S      +   +      +     N    +   +  +E + 
Sbjct: 356 VDTRAPDVAWDSQAKTAVSSRSLNLAMAPDVARSVTIWAANPANNDAVSLWTKLALEAAR 415

Query: 428 ERLRRRKQREVNRKTAIRK------LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
            R      +  +R  +  K         P  L         G ELF+ EGDSA G+ K A
Sbjct: 416 ARRSAEGAKARSRAASKAKGLGTNLSLPPKLLPSRETGRGSGAELFLCEGDSALGTIKAA 475

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541
           R+ + QA  PL+GK  NV      K R   +   + + LGC  R     E  RY++++  
Sbjct: 476 RDATFQAAFPLKGKPPNVYGFALSKARVKDEFDSIERILGCGVRDHCDPELCRYDRILFA 535

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +DAD DG +I S L++ F      L+E   +++  PPLF +  G + +Y  DE  +   +
Sbjct: 536 SDADPDGGNINSSLISMFLDFYRPLVEAGMVYVTLPPLFVVKNGDERIYCQDESERDAAV 595

Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
            + K   K ++E+ R KGLGEM A     T +D  +RT++RV  +     L  T      
Sbjct: 596 AQLKATSKKRVEVQRNKGLGEMDADDFWTTVLDPQRRTVIRVHPDDGEKKLHHT------ 649

Query: 662 LMGTKADERFKFIQERASFID 682
           L G   + R  ++ + AS ID
Sbjct: 650 LFGGPPEGRRTWMADVASRID 670


>gi|145221099|ref|YP_001131777.1| DNA topoisomerase (ATP-hydrolyzing) [Mycobacterium gilvum PYR-GCK]
 gi|315441936|ref|YP_004074815.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Mycobacterium sp. Spyr1]
 gi|145213585|gb|ABP42989.1| DNA topoisomerase (ATP-hydrolyzing) [Mycobacterium gilvum PYR-GCK]
 gi|315260239|gb|ADT96980.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Mycobacterium sp. Spyr1]
          Length = 677

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 167/681 (24%), Positives = 273/681 (40%), Gaps = 53/681 (7%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY---ANLIEV 99
           +Y A+ I  L+ ++  R+RP + +G      L+    E+IDNA++E +A      +++ +
Sbjct: 2   SYTAADITELDDVQHTRLRPAVNLG---LDVLNTALRELIDNAVEE-VADPDHGGSVVTI 57

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS--GGLHGV 157
           +L  +G ++V D+GRG+PV+  P    K+ +   L T  AGGKF   T   S   GL+G+
Sbjct: 58  TLHADGSVSVADDGRGLPVDTDP-TTGKNGIVKTLGTARAGGKFSAHTDATSTGAGLNGI 116

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIP-------------------LSPLEKKEK 198
           G +    +S    VTV R    + Q F RG P                           +
Sbjct: 117 GAAAAVFISARTDVTVRRGGKTYLQSFGRGYPGVFEGKEFDPGAPFTRSDTQKLRGVGNR 176

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +  GT +    DP +  D A      LL    + A +S  V+     +    E+    
Sbjct: 177 KPDAHGTTVRILFDPAVVPDSAVDIGEVLL-RAHAAARMSPGVQLFVVDEGWPGEEIPPA 235

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTG----KTEKKGTHRGTVEWAIAWCEENPE 314
             E F  P G  T L          +  +            G       W++      P 
Sbjct: 236 LLEPFKGPWGTDTLLDLMCTAAGTPAPGVRAVVEGRGEYTTGRGPTPFRWSLTAGPAEPA 295

Query: 315 ITS-YCNTILTDEGGTHESGLRVALTRGIKKYAELTQN----KRAISIISDDLMISAVGI 369
             + +CNT+ T  GG+H +     L+  +   A   ++    K        D        
Sbjct: 296 TVAAFCNTVRTPGGGSHLTAAVKGLSEALADRASRIRDLGLAKGEEGPEPQDFAAVTALA 355

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ--NPIEATKLLEWVIERSE 427
           +     +  +  Q KT + S      +   +      +     N    +   +  +E + 
Sbjct: 356 VDTRAPDVAWDSQAKTAVSSRSLNIAMAPDVARSVTVWAANPANSDTVSLWTKLALESAR 415

Query: 428 ERLRRRKQREVNRKTAIRK------LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
            R      +  +R  +  K         P  L         G ELF+ EGDSA G+ K A
Sbjct: 416 ARRSAEGAKARSRAASKAKGLGTNLSLPPKLLPSRETGRGSGAELFLCEGDSALGTIKAA 475

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541
           R+ + QA  PL+GK  NV      K R   +   + + LGC  R     E  RY++++  
Sbjct: 476 RDATFQAAFPLKGKPPNVYGFALSKARAKDEFDSIERILGCGVRDNCDPELCRYDRILFA 535

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +DAD DG +I S L++ F      L+E   +++  PPLF +  G + +Y  DE  +   +
Sbjct: 536 SDADPDGGNINSSLISMFLDFYRPLVEAGMVYVTLPPLFVVKAGDERIYCQDESERDAAV 595

Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
              K+  K K+E+ R KGLGEM A     T +D  +RT++R+  +     L  T      
Sbjct: 596 ARLKETSKRKVEVQRNKGLGEMDADDFWNTVLDPQRRTVIRLHPDDAEKKLHHT------ 649

Query: 662 LMGTKADERFKFIQERASFID 682
           L G   + R  ++ E A+ +D
Sbjct: 650 LFGGPPEGRRTWMAEIAARVD 670


>gi|310780937|gb|ADP23944.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 453

 Score =  330 bits (846), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 178/466 (38%), Positives = 262/466 (56%), Gaps = 17/466 (3%)

Query: 73  ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
            LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+
Sbjct: 1   GLHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEV 59

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
            LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + 
Sbjct: 60  ALTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTD 119

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
           LE   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  
Sbjct: 120 LEVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGK 177

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
           E       E F + GG+ ++++    N+ ++  E    + +        VE  + + +  
Sbjct: 178 E-------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNDSY 227

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369
              I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I
Sbjct: 228 NENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAI 287

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           +SV ++ P+F GQTKTKL + + +  VEN + D    +L +NP  A  ++E   + +  R
Sbjct: 288 VSVKLKNPQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAR 347

Query: 430 LRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
              RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSAK  RN   QA
Sbjct: 348 EAARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAKSGRNSRFQA 407

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
           +LPLRGKILNV  A  +KI +N++I  ++ ALG     ++    + 
Sbjct: 408 ILPLRGKILNVEKARLDKILSNEEIRAMITALGTGVGDEFDISKVS 453


>gi|13516997|dbj|BAB40381.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04441]
          Length = 474

 Score =  330 bits (845), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 178/483 (36%), Positives = 269/483 (55%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALS+ L  TV R   ++ Q + RG  L P++   +    R
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSESLKATVYRNGKVWEQSYERGKALHPVKSVGET-ELR 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF+PD  IF +   +    L    +  +YL+  V    +  +   E       E F
Sbjct: 60  GTMVTFKPDSTIFAEDLEYSYDTLASRMRELSYLNKGVTITLTDKRHKGEDG-EAVFERF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTI 322
           Y   GLK +++     R  +  ++   + EK       VE A+ +     E    Y N I
Sbjct: 119 YSDEGLKEFVRYLDGTRDSLIRDVIAMEGEKNDIP---VEVAMVYNTSFSENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLSGFRRGLTTTLKKYADASGMLDKLKFEIAGDDFREGLTAIVSVKVAEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + +    V  A+ +  ++YL ++P +A  +++ VI  ++ R   RK RE+  
Sbjct: 236 GQTKTKLGNREVTSAVSQAVSEMLENYLEEHPDDARAIVQKVILAAQARHAARKAREMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV
Sbjct: 296 RKTVMSGGGLPGKLSDCSEQDPAICEIFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASL 554
             A   K+  N++I ++  A G    ++        + LRY K++IM DADVDG+HIA+L
Sbjct: 356 EKAMQHKVFENEEIRNIFTAFGVTIGTEEDSKALNLDKLRYHKIVIMCDADVDGSHIATL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +LIE  ++++ +PPL+ + +G K  YA  ++ + ++ +E+         I
Sbjct: 416 ILTFFFRYMKELIENGYIYIATPPLYLVRKGNKKAYAWSDKERDQLNDEYGGSAI----I 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|19909541|dbj|BAB86966.1| DNA gyrase subunit B [Chlorobium limicola]
          Length = 457

 Score =  330 bits (845), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 178/467 (38%), Positives = 257/467 (55%), Gaps = 19/467 (4%)

Query: 71  EKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTL 130
            + LHHL  E++DN++DE +AG+ + I V+++ +G +TV D GRGIPV+ HP    KS L
Sbjct: 2   SRGLHHLVYEIVDNSIDETLAGFNDYIHVAMNPDGSVTVTDRGRGIPVDIHP-VKKKSAL 60

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+++T + AGGKFD   Y++SGGLHGVG SVVNALS+     V R   IF Q + RG+P 
Sbjct: 61  ELVMTVIGAGGKFDKGAYKVSGGLHGVGASVVNALSEWCEAEVYRDGKIFRQTYKRGVPQ 120

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
             +E+     +++GT++TF+PDP IF     F    ++   +  A+L+  ++      + 
Sbjct: 121 GGVEEVG-TTDQKGTKVTFKPDPDIF-KITEFRKDIIIDRMRELAFLNSNLRIIVQDAEG 178

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQT-KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
             E         F+F GGL+           S  S    +   E++ T    VE A+ + 
Sbjct: 179 FEET--------FHFEGGLQGVSCALPTPTASACSRSRSSFSGERESTM---VEIALQYN 227

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISA 366
           +     + SY N I T EGGTH +G R ALTR +  YA+     + + I    DD     
Sbjct: 228 DSYQENVFSYVNNINTHEGGTHVTGFRKALTRTLNAYAQKNDLLKNVKITLTGDDFKEGL 287

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             ++SV + EP+F GQTKTKL + + Q  VE  + +    +   NP     ++E V   +
Sbjct: 288 TAVISVKVPEPQFEGQTKTKLGNSETQSIVETIVNEQLAEFAESNPGTLKLIIEKVKGAA 347

Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
             R   RK +E   RK+ +    LPGKLADCS N     EL+IVEGDSAGGSAKQ R+RS
Sbjct: 348 ISREAARKAKELTRRKSVLESSGLPGKLADCSINDPDHCELYIVEGDSAGGSAKQGRDRS 407

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
            QA+LPL+GKILNV  A   K+  N++I  ++ ALG     +    +
Sbjct: 408 FQAILPLKGKILNVEKARLHKMLENEEIKTIILALGTSIGEEEFSPE 454


>gi|194339081|gb|ACF49456.1| GyrB [Amycolatopsis keratiniphila subsp. nogabecina]
          Length = 466

 Score =  330 bits (845), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 177/473 (37%), Positives = 267/473 (56%), Gaps = 19/473 (4%)

Query: 72  KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLE 131
             LHHL  EV+DN++DE +AGYA  +EV+L  +G + VVD+GRGIPV+ HPK   K TLE
Sbjct: 1   SGLHHLVQEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVDIHPK-EQKPTLE 59

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           ++LT LHAGGKFD+ +Y +SGGLHGVG+SVVNALS +L   V R    + Q ++  IP  
Sbjct: 60  VVLTVLHAGGKFDSDSYAVSGGLHGVGVSVVNALSTKLIAEVKRGGHSWRQVYTDQIP-G 118

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
            LE      +  GT ITF  D  IF     ++   + +  Q  A+L+  +      ++  
Sbjct: 119 ELEDLGPAED-TGTTITFWADGDIFET-TTYNFETISRRLQEMAFLNKGLTLSLRDERVA 176

Query: 252 AEKYGIP--------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
            E+            +++ + +PGGL+ +++    ++  I + + + + +  G     VE
Sbjct: 177 DEETEADASGQAARVKEKTYCYPGGLEDFVKHINGSKDPIHASVISFEAKGTG---LEVE 233

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISD 360
            A+ W     P + ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  D
Sbjct: 234 VAMQWNNGFTPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDANLSGD 293

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D+      I+S+ + EP+F GQTKTKL + +A+  V+    +    +  +NP EA  ++ 
Sbjct: 294 DVREGLAAIVSIKLSEPQFEGQTKTKLGNSEAKTFVQQTSNEWLADWFERNPTEAKTIIN 353

Query: 421 WVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
             I  ++ R+  RK R+ V RK A+    LPGKL DC        EL+IVEGDSAGGSAK
Sbjct: 354 KSISSAQARMAARKARDLVRRKGALEIGGLPGKLKDCRSTNPSECELYIVEGDSAGGSAK 413

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           + R+   QA+LP+RGKI+NV  A  +++  N ++  L+ ALG     ++  E 
Sbjct: 414 EGRDSMYQAILPIRGKIINVEKARIDRVLKNTEVQSLITALGTGIHEEFDIEK 466


>gi|11386844|sp|Q9LCK1|GYRB_CYTHU RecName: Full=DNA gyrase subunit B
 gi|6946707|dbj|BAA90686.1| DNA gyrase subunit B [Cytophaga hutchinsonii ATCC 33406]
          Length = 478

 Score =  330 bits (845), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 174/484 (35%), Positives = 270/484 (55%), Gaps = 16/484 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALS ++ VTV     +  Q++ +GIP   +++  +  +  
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSTDMKVTVYSHGKVHQQEYKKGIPQYDVKEIGE-SDLH 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT++ F PD  IF     +    +    +  ++L+  ++      +   +  G  E E F
Sbjct: 60  GTKVQFLPDDTIFTSS-EYKYETIANRLRELSFLNKGIRITLQDHR-QVDAEGKSEIEMF 117

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTI 322
           +  GGL+ ++      R  +       +++K       VE A+ +     E   SY N I
Sbjct: 118 HSEGGLREFVDYLDSTREKLIPTPLYMESDKGPIP---VEVAMLYNTSYSENVFSYVNNI 174

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH +G R ALTR +K YA+ +    K  + +  DD       ++SV ++EP+F 
Sbjct: 175 NTIEGGTHVAGFRRALTRTLKSYADKSGMLEKLKMEVTGDDFREGLTAVISVKVQEPQFE 234

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + D    V+  + +  + YL +NP EA  +++ VI  ++ R   RK RE+ +
Sbjct: 235 GQTKTKLGNSDVMGAVDQVVGEMLNTYLEENPKEAKIIVQKVILAAQARNAARKAREMVQ 294

Query: 441 KTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +   +    LPGKLADCS++     EL++VEGDSAGGSAKQ R+R   A+LPLRGKILNV
Sbjct: 295 RKNVLSGSGLPGKLADCSESDPEKCELYLVEGDSAGGSAKQGRDRKYHAILPLRGKILNV 354

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASL 554
             A   +I  N +I +++ ALG    ++          LRY KVIIMTDAD+DG+HI +L
Sbjct: 355 EKAQEHRIYENDEIKNMITALGVSFGTEEGEKVLNLTKLRYHKVIIMTDADIDGSHIRTL 414

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIE 613
           +LTFF++ M  LI+  H+++  PPL+ + +G +  Y   EE ++  ++E  K GK   + 
Sbjct: 415 ILTFFFRYMRALIDGGHVYIAQPPLYLVKRGKEEKYCWTEEQREAAVKELAKDGKEDSVG 474

Query: 614 ISRF 617
           I R+
Sbjct: 475 IQRY 478


>gi|10039321|dbj|BAB13321.1| DNA gyrase B submit [Flexibacter flexilis]
          Length = 478

 Score =  330 bits (845), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 186/484 (38%), Positives = 275/484 (56%), Gaps = 16/484 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  TY++SGGLHGVG+S VNALS  L  TV R+  IF Q++S G PL P++   +  ++ 
Sbjct: 1   DKDTYKVSGGLHGVGVSCVNALSTHLRATVHREGKIFQQEYSCGAPLYPVKVVGET-DRT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT I F PD  IF     +    +    +  +YL+  +    +  ++  +    P  E F
Sbjct: 60  GTIIDFTPDASIFT-ITEYKYDTVASRLRELSYLNKGIHISLTDLRQTDDNGQ-PLGEAF 117

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           Y  GGL+ +++     R  +  E    ++EK GT    VE A+ +       + SY N I
Sbjct: 118 YSEGGLREFVEYLDSTRENLIPEPIHMESEKNGTP---VEVALLYNTSYTENVFSYVNNI 174

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH +G R ALTR +K YA+ +    K  I I  DD       ++SV + EP+F 
Sbjct: 175 NTIEGGTHVAGFRRALTRTLKNYADRSGILEKEKIEITGDDFREGLTAVISVKVAEPQFE 234

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVN 439
           GQTKTKL + D    V+ ++ +  D YL ++P EA  ++  VI         R+ +  V 
Sbjct: 235 GQTKTKLGNSDVMGAVDASVAEMLDTYLEEHPREAKLIVSKVILAAKARHAARKAREMVQ 294

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK  +    LPGKLADCS++     E+++VEGDSAGGSAKQ RNR+ QA+LPLRGKILNV
Sbjct: 295 RKNVLSGSGLPGKLADCSESDPAVCEIYMVEGDSAGGSAKQGRNRAFQAILPLRGKILNV 354

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASL 554
             A   +I ++++I +++ A+G    +         E LRY K+IIMTDADVDG+HI +L
Sbjct: 355 EKAQEHRIYDSEEIRNIITAMGVSFGTADGERALNLEKLRYHKIIIMTDADVDGSHIRTL 414

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIE 613
           +LTFFY+ M ++IE  +L++  PPL+ + +G +  Y   EE +++ + E  K G+   + 
Sbjct: 415 ILTFFYRYMREIIENGYLYIAQPPLYLVKKGKEERYCWTEEQREQAVRELAKEGREDSVG 474

Query: 614 ISRF 617
           I R+
Sbjct: 475 IQRY 478


>gi|19909537|dbj|BAB86964.1| DNA gyrase subunit B [Caulobacter vibrioides]
          Length = 478

 Score =  330 bits (845), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 181/486 (37%), Positives = 275/486 (56%), Gaps = 25/486 (5%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
           D   LHH+  EV+DNA+DE +AG+A  ++V L+ +G +TV D+GRGIPV+ H +    S 
Sbjct: 3   DGSGLHHMVYEVVDNAIDEALAGHATKVQVILNADGSVTVTDDGRGIPVDMH-EGEGVSA 61

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALSD L + + R   +   +F RG  
Sbjct: 62  AEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLELLIHRNGKVHQMRFERGDA 121

Query: 190 LSPLEKKEKV----------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
           ++ L+                   GT +TF P  + F     FD   L    +  A+L+ 
Sbjct: 122 VTSLKVTGDSPVRTEGPKAGETLTGTEVTFFPSKETF-AFIEFDRKTLEHRLRELAFLNS 180

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            V   +   ++       P +E+ ++ GG++ +++   + ++ +     + +  K     
Sbjct: 181 GVTIWFKDHRD-----AEPWEEKLHYDGGIEAFVRHLDKVKTPLLKAPISVRGVKDKV-- 233

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
             V+ A+ W +    ++  + N I   +GGTH S  R ALTR I  YAE +    K  +S
Sbjct: 234 -EVDLALWWNDSYHEQMLCFTNNIPQRDGGTHLSAFRAALTRIITGYAESSGILKKEKVS 292

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           +  +D       +LSV + +P+F+ QTK KLVS + +  VE  +++    +  ++P EA 
Sbjct: 293 LGGEDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGLVQEGLATWFEEHPNEAR 352

Query: 417 KLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            ++  + E +  R   RK RE   RK+A+    LPGKLADCS+     +E+FIVEGDSAG
Sbjct: 353 AIVSKIAEAAAAREAARKARELTRRKSALDITSLPGKLADCSERDPAKSEIFIVEGDSAG 412

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLR 534
           GSAKQARNR NQAVLPLRGKILNV  A  +K+ ++ QI  L+ ALG    R  +  + +R
Sbjct: 413 GSAKQARNRDNQAVLPLRGKILNVERARFDKMLSSDQIGTLITALGAGIGRDDFNPDKVR 472

Query: 535 YEKVII 540
           Y K+++
Sbjct: 473 YHKIVL 478


>gi|310781081|gb|ADP24016.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 446

 Score =  330 bits (845), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 178/454 (39%), Positives = 259/454 (57%), Gaps = 17/454 (3%)

Query: 73  ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
            LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+
Sbjct: 2   GLHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEV 60

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
            LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + 
Sbjct: 61  ALTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTD 120

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
           LE   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  
Sbjct: 121 LEVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGK 178

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
           E       E F + GG+ ++++    N+ ++  E    + +        VE  + + +  
Sbjct: 179 E-------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNDSY 228

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369
              I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I
Sbjct: 229 NENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAI 288

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           +SV ++ P+F GQTKTKL + + +  VEN + D    +L +NP  A  ++E   + +  R
Sbjct: 289 VSVKLKNPQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAR 348

Query: 430 LRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
              RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSAK  RN   QA
Sbjct: 349 EAARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAKSGRNSRFQA 408

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           +LPLRGKILNV  A  +KI +N++I  ++ ALG 
Sbjct: 409 ILPLRGKILNVEKARLDKILSNEEIRAMITALGT 442


>gi|6018679|emb|CAB57876.1| DNA gyrase B subunit [Photobacterium damselae subsp. damselae]
          Length = 676

 Score =  329 bits (844), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 175/469 (37%), Positives = 273/469 (58%), Gaps = 15/469 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+++ +T+ R   I  Q +  G+P +PLE      ++ G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKVELTIYRHGHIHRQIYRHGVPQAPLEVIGDT-DRTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I F P  + F +   F    L K  +  ++L+  V    + ++E        +++ F 
Sbjct: 60  TTIRFWPSSETFTNTT-FQYEILAKRLRELSFLNSGVSIKLNDERE------EGKQDHFM 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG++ +++    N++ I  ++F    E++     TVE A+ W +     I  + N I 
Sbjct: 113 YEGGIQAFVEHLNRNKTPIHQKVFHFNVERED--GITVEVAMQWNDGFQENIYCFTNNIP 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  Y E      K   +   DD       ++SV + +P+F+ 
Sbjct: 171 QRDGGTHLAGFRGALTRTLNNYMEKEGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSS 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE+ + +    +L++NP +A  +   +I+ S  R   RK R    R
Sbjct: 231 QTKDKLVSSEVKSAVESTMGEKLGEFLLENPGDAKTVCTKIIDASRAREAARKAREMTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 291 KGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
            A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF
Sbjct: 351 KARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFF 410

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           Y++M +LIE+ H+++  PPL+++ +G +  Y  D+E  Q+         
Sbjct: 411 YRQMPELIERGHIYIAQPPLYKVKKGKQEQYIKDDEDMQQFQTSLALEN 459



 Score = 98.7 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 4/66 (6%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            +++LE   K  +  + + R+KGLGEM   QL ET MD   R ++RV IN  +       
Sbjct: 615 FKEVLEWLNKESRRGLSLQRYKGLGEMNPDQLWETTMDPESRRMMRVTINDAV----AAD 670

Query: 657 DSINKL 662
           +    L
Sbjct: 671 ELFTTL 676


>gi|108802302|ref|YP_642499.1| DNA topoisomerase (ATP-hydrolyzing) [Mycobacterium sp. MCS]
 gi|119871455|ref|YP_941407.1| DNA topoisomerase (ATP-hydrolyzing) [Mycobacterium sp. KMS]
 gi|108772721|gb|ABG11443.1| DNA topoisomerase (ATP-hydrolyzing) [Mycobacterium sp. MCS]
 gi|119697544|gb|ABL94617.1| DNA topoisomerase (ATP-hydrolyzing) [Mycobacterium sp. KMS]
          Length = 677

 Score =  329 bits (844), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 167/681 (24%), Positives = 273/681 (40%), Gaps = 53/681 (7%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY---ANLIEV 99
           +Y A+ I  L+ ++  R+RP + +G      L+    E+IDNA++E +A      + + +
Sbjct: 2   SYTAADITELDDVQHTRLRPAVNLG---LDVLNTALRELIDNAIEE-VADPSHGGSAVTI 57

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD--NSTYEISGGLHGV 157
           +L  +G ++V D+GRG+PV++ P    K+ +   L T  AGGKF           GL+G+
Sbjct: 58  TLHDDGSVSVADDGRGLPVDSDP-VNGKNGIVKTLGTARAGGKFSAHTDAASTGAGLNGI 116

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK-------------------EK 198
           G +    +S    VTV R    + Q F RG P     K                     +
Sbjct: 117 GAAAAVFISARTDVTVRRAGKTYLQSFGRGYPGVFEGKDFDPDAPFTRADTQKLRGTGNR 176

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +  GT +    DP +  D        LL    + A +S  V      +    ++    
Sbjct: 177 KPDVHGTTVRILFDPAVVPDSQIDIGEVLL-RAHAAARMSPGVHLSVIDEGWPGDEVAPA 235

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTG----KTEKKGTHRGTVEWAIAWCEENPE 314
             E F  P G  T L          +  +            G       W++      P 
Sbjct: 236 LLEPFTGPWGTDTLLDLMCTAAGTPAPGVRAVVEGRGEYTTGRGPTPFRWSLTAGPAEPA 295

Query: 315 ITS-YCNTILTDEGGTHESGLRVALTRGIKKYAELTQN----KRAISIISDDLMISAVGI 369
             + +CNT+ T  GG+H +     L+  +   A   ++    K      + D        
Sbjct: 296 TVAAFCNTVRTPGGGSHLTAAMKGLSEALADRASRMRDLGLAKGEEGPEAQDFAAVTALA 355

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ--NPIEATKLLEWVIERSE 427
           +     +  +  Q KT + S      +   +      +     N    +   +  +E + 
Sbjct: 356 VDTRAPDVAWDSQAKTAVSSRSLNVAMAPDVARSVTIWAANPANGDAVSLWTKLALESAR 415

Query: 428 ERLRRRKQREVNRKTAIRK------LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
            R      +  +R  +  K         P  L         G ELF+ EGDSA G+ K A
Sbjct: 416 ARRSAEGAKARSRAASKAKGLGTNLSLPPKLLPSRETGRGSGAELFLCEGDSALGTIKAA 475

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541
           R+ + QA  PL+GK  NV      K R   +   + + LGC  R     E  RY++++  
Sbjct: 476 RDATFQAAFPLKGKPPNVYGFALNKARAKDEFDSIERILGCGVRDNCDPELCRYDRILFA 535

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +DAD DG +I S L++ F      L+E   +++  PPLF +  GT+ +Y  DE  +   +
Sbjct: 536 SDADPDGGNINSSLISMFLDFYRPLVEAGMVYVTLPPLFVVKDGTQRIYCQDESERDAAV 595

Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
            + K   K K+E+ R KGLGEM A     T +D  +RT++RV  +   N L  T      
Sbjct: 596 AKMKATSKRKVEVQRNKGLGEMDADDFWNTVLDPQRRTVIRVHPDDSENKLHHT------ 649

Query: 662 LMGTKADERFKFIQERASFID 682
           L G   + R  ++ + AS +D
Sbjct: 650 LFGGPPEGRRTWMADVASRVD 670


>gi|9971377|dbj|BAB12495.1| DNA gyrase B subunit [Flexibacter aggregans]
          Length = 478

 Score =  329 bits (844), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 179/484 (36%), Positives = 279/484 (57%), Gaps = 16/484 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+SVVNALS  L   V R+  ++ Q++ RG PL P+++   V  + 
Sbjct: 1   DKDSYKVSGGLHGVGVSVVNALSRHLKAEVRREGKLYVQEYERGKPLYPVKEDG-VSTEN 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF  D +IF +   +    L    +  ++L+  ++     ++   E+    E + F
Sbjct: 60  GTTVTFFADGQIFDEL-DYTYDILASRMRELSFLNKGLRLIIRDERSTDEEGNFKE-DNF 117

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           +   GL  +++   E+R  +  E+     EK G     VE A+ +       + SY N I
Sbjct: 118 FSEIGLSEFVRFLDESREPLIEEVIHVSGEKNGVP---VEVAMIYNTSYAENLHSYVNNI 174

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KKYA+ +    K    I  DD       ++SV + EP+F 
Sbjct: 175 NTHEGGTHLSGFRRGLTSTLKKYADESGMLDKLKFEIAGDDFREGLTAVISVKVAEPQFE 234

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +    V  A+ +    YL +NP +A +++E VI  +  R   RK RE+ +
Sbjct: 235 GQTKTKLGNREVNAPVSQAVSEMLSDYLEENPKDARRIIEKVILAATARHAARKAREMVQ 294

Query: 441 KTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           + + +    LPGKLADCS      +E+++VEGDSAGG+AKQ R+R  QA++PLRGKILNV
Sbjct: 295 RKSVLTGTGLPGKLADCSSKDPAESEVYLVEGDSAGGTAKQGRDRHFQAIMPLRGKILNV 354

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASL 554
             A   KI  N++I ++  ALG R  ++  +       LRY K+IIM DADVDG+HI +L
Sbjct: 355 EKAMVHKIFENEEIKNIYTALGVRIGTEDDDRALNLEKLRYHKIIIMCDADVDGSHIETL 414

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIE 613
           +LTFF++ M +LIE  ++++ +PPL+++ +G KS YA +++ + K++ + K  G    + 
Sbjct: 415 ILTFFFRYMRELIELGYIYIATPPLYQVKKGKKSHYAWNDDQRDKLVMDMKGAGSDSSVN 474

Query: 614 ISRF 617
           + R+
Sbjct: 475 VQRY 478


>gi|310781085|gb|ADP24018.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781087|gb|ADP24019.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781171|gb|ADP24061.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 445

 Score =  329 bits (844), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 178/454 (39%), Positives = 259/454 (57%), Gaps = 17/454 (3%)

Query: 73  ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
            LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+
Sbjct: 1   GLHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEV 59

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
            LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + 
Sbjct: 60  ALTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTD 119

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
           LE   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  
Sbjct: 120 LEVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGK 177

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
           E       E F + GG+ ++++    N+ ++  E    + +        VE  + + +  
Sbjct: 178 E-------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNDSY 227

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369
              I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I
Sbjct: 228 NENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAI 287

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           +SV ++ P+F GQTKTKL + + +  VEN + D    +L +NP  A  ++E   + +  R
Sbjct: 288 VSVKLKNPQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAR 347

Query: 430 LRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
              RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSAK  RN   QA
Sbjct: 348 EAARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAKSGRNSRFQA 407

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           +LPLRGKILNV  A  +KI +N++I  ++ ALG 
Sbjct: 408 ILPLRGKILNVEKARLDKILSNEEIRAMITALGT 441


>gi|6939886|dbj|BAA90677.1| DNA gyrase subunit B [Empedobacter brevis]
          Length = 479

 Score =  329 bits (844), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 187/484 (38%), Positives = 282/484 (58%), Gaps = 15/484 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  TY++SGGLHGVG+S VNALS+ L   V +    + Q++S+G PL  +++        
Sbjct: 1   DKDTYKVSGGLHGVGVSCVNALSNHLSAEVFKNGKQYIQEYSKGKPLYDVKEVGTTEK-N 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF PD  IF +   ++   L    +  A+L+  +      ++E  +  G    E F
Sbjct: 60  GTTVTFTPDDTIFQEVQTYNYQTLANRLRELAFLNKGINITLIDERE-KDADGNSITETF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           +   GLK +++    +R  I  ++   + E+ G     VE A+ +       + SY N I
Sbjct: 119 HSEEGLKEFVEFIDGSRESIMDKVIFMEGERDGIP---VEVAMRYNTSYNENVHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R ALTR +KKYAE   N  K  + I+ DD       ++SV + EP+F 
Sbjct: 176 NTHEGGTHLSGFRRALTRTLKKYAEENFNLAKEKVEIVGDDFREGLTAVISVKVMEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVN 439
           GQTKTKL + +    V+  + +   ++L +NP EA ++++ VI      +  ++ +  V 
Sbjct: 236 GQTKTKLGNSEVSPAVDKIVAEMLTNFLEENPTEAKQIVDKVILAAKARQAAKKAREMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK  +    LPGKLADCS      +ELF+VEGDSAGG+AKQ R+R  QA+LPLRGKILNV
Sbjct: 296 RKNPMGGSGLPGKLADCSSRKPEESELFLVEGDSAGGTAKQGRDRHFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASL 554
             A + K+ +N++I ++  ALG    ++          LRY KV+IMTDADVDG+HIA+L
Sbjct: 356 EKAMAHKVLDNEEIKNIYTALGVTIGTEEDSKALNISKLRYHKVVIMTDADVDGSHIATL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK-IE 613
           +LTFF++ M +LIEQ H+++ +PPL+ I +G K+ YA +E+ ++++  EF   G GK + 
Sbjct: 416 ILTFFFRYMKELIEQGHIYIATPPLYLIKKGAKAEYAWNEKERERLTAEFSADGSGKGVT 475

Query: 614 ISRF 617
           I R+
Sbjct: 476 IQRY 479


>gi|310781173|gb|ADP24062.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 451

 Score =  329 bits (844), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 178/464 (38%), Positives = 260/464 (56%), Gaps = 17/464 (3%)

Query: 73  ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
            LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+
Sbjct: 1   GLHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEV 59

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
            LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + 
Sbjct: 60  ALTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTD 119

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
           LE   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  
Sbjct: 120 LEVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGK 177

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
           E       E F + GG+ ++++    N+ ++  E    + +        VE  + + +  
Sbjct: 178 E-------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNDSY 227

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369
              I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I
Sbjct: 228 NENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAI 287

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           +SV ++ P+F GQTKTKL + + +  VEN + D    +L +NP  A  ++E   + +  R
Sbjct: 288 VSVKLKNPQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAR 347

Query: 430 LRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
              RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSAK  RN   QA
Sbjct: 348 EAARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAKSGRNSRFQA 407

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           +LPLRGKILNV  A  +KI +N++I  ++ ALG      +    
Sbjct: 408 ILPLRGKILNVEKARLDKILSNEEIRAMITALGTGVGDDFDISK 451


>gi|194339089|gb|ACF49460.1| GyrB [Amycolatopsis minnesotensis]
          Length = 461

 Score =  329 bits (844), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 173/466 (37%), Positives = 263/466 (56%), Gaps = 18/466 (3%)

Query: 63  GMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122
           GMYIG T E+ LHHL  EV+DNA+DE +AGYA  +EV+L  +G + VVD+GRGIPV+ HP
Sbjct: 1   GMYIGSTGERGLHHLIWEVVDNAVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVDMHP 60

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
              NK TLE++LT LHAGGKFD  +Y +SGGLHGVG+SVVNALS  L V +     I++Q
Sbjct: 61  -VENKPTLEVVLTQLHAGGKFDGESYAVSGGLHGVGVSVVNALSTRLDVEIHLDGKIWTQ 119

Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
            +    P++P+ ++          +TF  DP IF     ++A  + +  Q  A+L+  + 
Sbjct: 120 TYEMSEPVAPIAEQGTTTKTGT-TVTFWADPTIFET-TTYNAETVARRLQEMAFLNKGLS 177

Query: 243 TCWSCDKEIAEKYGIP--------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
                ++   E+            ++  +++PGGL+ +++    ++  I + + +   + 
Sbjct: 178 ITLRDERVAEEETEEDAGGQQARVKERVYHYPGGLEDFVRHINGSKDPIHASVISFDAKG 237

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQN 351
            G     VE A+ W     P + ++ NTI T EGGTHE G R ALTR +  Y   +    
Sbjct: 238 DG---LEVEVAMQWNNSFTPSVYTFANTINTHEGGTHEEGFRAALTRVVNLYAKDKKLLK 294

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           ++  ++  +D+      I+S+ + EP+F GQTKTKL + +A+  V++   +    +  +N
Sbjct: 295 EKDDNLSGEDVREGLAAIVSIKLAEPQFEGQTKTKLGNSEAKTFVQSKTNEWLADWFERN 354

Query: 412 PIEATKLLEWVIER-SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P EA  ++   +         RR +  V RK A+    LPGKL DC        EL+IVE
Sbjct: 355 PSEAKTVINKAVSSAQARMAARRARDLVRRKGALDIGGLPGKLKDCRSTNPEECELYIVE 414

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           GDSAGGSAK+ R+   QA+LP+RGKI+NV  A  +++  N ++  L
Sbjct: 415 GDSAGGSAKEGRDSMFQAILPIRGKIINVEKARIDRVLKNTEVQSL 460


>gi|19909545|dbj|BAB86968.1| DNA gyrase subunit B [Caulobacter sp. ATCC 15259]
          Length = 474

 Score =  329 bits (844), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 175/482 (36%), Positives = 271/482 (56%), Gaps = 21/482 (4%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
           D   LHH+  EV+DNA+DE +AG+A+L+EV L+ +G +TV DNGRGIPV+ H +    S 
Sbjct: 3   DGSGLHHMVYEVVDNAIDEALAGHADLVEVILNADGSVTVTDNGRGIPVDIHAE-EGVSA 61

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALSD L + + R       KF RG  
Sbjct: 62  AEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLKLVIFRNGQRHEMKFERGDT 121

Query: 190 LSPLEKKEKV------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           +  L+   +       +   GT++TF P    F     FD   L    +  A+L+  V  
Sbjct: 122 VESLKVTGEAPVRENGKVVSGTQVTFYPSITTF-AHIDFDLKTLEHRLRELAFLNSGVVI 180

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
             + ++     +  P +   ++ GG++ +++   ++++ I  ++   + +K       ++
Sbjct: 181 KLADNR-----HPEPVEIMLHYEGGVEAFVRHLDKSKTPILKDVIVIRGKKDNI---EID 232

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISD 360
            A+ W +     +  + N I   +GGTH S  R +LT+ +  Y E +    K  ++   +
Sbjct: 233 LALWWNDSYHETMLCFTNNIPQRDGGTHLSAFRTSLTKVMGAYMESSGALKKEKVAPTGE 292

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D       +LSV + +P+F+ QTK KLVS + +  VE    +    +  ++P+EA  ++ 
Sbjct: 293 DAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGLCSEGLSQWFEEHPVEAKMVVA 352

Query: 421 WVI-ERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
            +I   S     R+ +    RK+A+    LPGKLADC +     +ELFIVEGDSAGGSAK
Sbjct: 353 KIIEAASAREAARKARDLTRRKSALDISSLPGKLADCQERDPAKSELFIVEGDSAGGSAK 412

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKV 538
           QARNR NQAVLPLRGKILNV  A  +++ +++ I  L+ ALG        + + LRY K+
Sbjct: 413 QARNRENQAVLPLRGKILNVERARFDRMLSSELIGTLILALGTGIGRDDFDADKLRYHKI 472

Query: 539 II 540
           I+
Sbjct: 473 IL 474


>gi|71666676|ref|XP_820295.1| mitochondrial DNA topoisomerase II [Trypanosoma cruzi strain CL
           Brener]
 gi|70885633|gb|EAN98444.1| mitochondrial DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1231

 Score =  329 bits (844), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 136/672 (20%), Positives = 246/672 (36%), Gaps = 69/672 (10%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTDEK-----------------------ALHHLFSEVI 82
           AS  + L  ++ V +RP MY+G  D                          L  +  E++
Sbjct: 4   ASKYKKLTPIDHVLIRPEMYVGSVDTSSSSMFVFDHEKGRMVWESLKVNHGLLKIVDEIL 63

Query: 83  DNAMDEVIA--GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140
            NA D +    G    I V +   G +T+ ++G GIP+    K       E++   L   
Sbjct: 64  LNASDNIANKGGRMTYIRVHITEAGEITIENDGAGIPI-VRSKEHKLYIPEMVFGHLLTS 122

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI--PLSPLEKKEK 198
             +D+++     G HG G  + N LS    V    +   F   +   +    +P      
Sbjct: 123 SNYDDTSQNAVAGRHGYGAKLTNILSHRFSVCCRTKGKEFHMSWHDHMRRATAPRVSNVD 182

Query: 199 VRNKRGTRITFRPDPKIF----GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
            R +  TR+ F PD + F       +      L K     A +   ++   +        
Sbjct: 183 PRERNLTRVKFLPDYERFGLDANKISHDMKRVLHKRIMDLAAMFPSIEISLNG------- 235

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE 314
                   F F       +       S            + G     + +  +       
Sbjct: 236 ------VPFAFKSFADYAMLYSSPTSSGEMPPAPFVYESRNG----AIAFIPSLTAGTRR 285

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFI 374
           I    N ++T  GGTH +  +  L   + +  E    K    I ++ ++     ++ +  
Sbjct: 286 IFGVVNGVVTHNGGTHCNAAQEVLQSSL-ENVEKALKKDNKVIDTNRVLRHFTILVFLVQ 344

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            +P+F  Q K +LVS+     V       F   L    +EA           E       
Sbjct: 345 VQPKFDSQNKARLVSVPTMPRVPKQELMDFL--LRMPFLEAHVNTVTGQLAQELNKEMGA 402

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ---ARNRSNQAVLP 491
            R ++ K+ I  +          ++      L + EGDSA   A+    +  +    V P
Sbjct: 403 GRRMSSKSLISSITKLVDATTTRRDPRFVRTLIVTEGDSAKALAQNSLSSDQKRYTGVFP 462

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAH 550
           LRGK+LNV +   ++++N +++ +L  ALG      Y++ E+LRY+++++MTD D DG+H
Sbjct: 463 LRGKLLNVRNKNLKRLKNCKELQELFCALGLELGKIYKDAEELRYQRLLVMTDQDADGSH 522

Query: 551 IASLLLTFFYQEMYDLIEQ--KHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKH 607
           I  L++  F      L+ +    + + S P+ ++  +   +      +   K     K H
Sbjct: 523 IKGLVINAFEALWPSLLNRNPGFISIFSTPIVKVRLRDKSTHSFFSLKEFHKW---QKTH 579

Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667
           G        +KGLG    ++ KE   D +K T+  V    + N  K      +     + 
Sbjct: 580 GNVSYTAKYYKGLGTSTTAEGKEYFKDMDKHTMRLVV---ERNDHKLLDSVFD---SQEV 633

Query: 668 DERFKFIQE-RA 678
           + R  ++ +  A
Sbjct: 634 EWRKDWMTKANA 645


>gi|310781287|gb|ADP24119.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781289|gb|ADP24120.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 450

 Score =  329 bits (843), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 177/454 (38%), Positives = 259/454 (57%), Gaps = 17/454 (3%)

Query: 73  ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
            LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+
Sbjct: 1   GLHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEV 59

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
            LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + 
Sbjct: 60  ALTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHGKIYRQIYERGVPKTD 119

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
           LE   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  
Sbjct: 120 LEVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGK 177

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
           E       E F + GG+ ++++    N+ ++  E    + +        VE  + + +  
Sbjct: 178 E-------EVFNYEGGIISFVKYLNRNKEVLHEEPIYMEAKNND---YEVEVCMQYNDSY 227

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369
              I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I
Sbjct: 228 NENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAI 287

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           +SV ++ P+F GQTKTKL + + +  VEN + +    +L +NP  A  ++E   + +  R
Sbjct: 288 VSVKLKNPQFEGQTKTKLGNSEMRSIVENVVTEKLTAFLEENPSVAKIIVEKATQAARAR 347

Query: 430 LRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
              RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSAK  RN   QA
Sbjct: 348 EAARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAKSGRNSRFQA 407

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           +LPLRGKILNV  A  +KI +N++I  ++ ALG 
Sbjct: 408 ILPLRGKILNVEKARLDKILSNEEIRAMITALGT 441


>gi|310781199|gb|ADP24075.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 451

 Score =  329 bits (843), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 178/464 (38%), Positives = 260/464 (56%), Gaps = 17/464 (3%)

Query: 73  ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
            LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+
Sbjct: 1   GLHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEV 59

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
            LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + 
Sbjct: 60  ALTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHGKIYRQIYERGVPKTD 119

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
           LE   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  
Sbjct: 120 LEVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGK 177

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
           E       E F + GG+ ++++    N+ ++  E    + +        VE  + + +  
Sbjct: 178 E-------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNDSY 227

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369
              I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I
Sbjct: 228 NENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAI 287

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           +SV ++ P+F GQTKTKL + + +  VEN + D    +L +NP  A  ++E   + +  R
Sbjct: 288 VSVKLKNPQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAR 347

Query: 430 LRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
              RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSAK  RN   QA
Sbjct: 348 EAARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAKSGRNSRFQA 407

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           +LPLRGKILNV  A  +KI +N++I  ++ ALG      +    
Sbjct: 408 ILPLRGKILNVEKARLDKILSNEEIRAMITALGTGVGDDFDISK 451


>gi|194339057|gb|ACF49444.1| GyrB [Amycolatopsis australiensis]
          Length = 451

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 174/457 (38%), Positives = 260/457 (56%), Gaps = 19/457 (4%)

Query: 72  KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLE 131
           + LHHL  EV+DN++DE +AGYA  +EV+L  +G + VVD+GRGIPVE HPK   K T+E
Sbjct: 1   RGLHHLVQEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVEMHPK-EQKPTIE 59

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           ++LT LHAGGKFD+ +Y +SGGLHGVG+SVVNALS  L   V R    + Q+++  +P  
Sbjct: 60  VVLTVLHAGGKFDSDSYAVSGGLHGVGVSVVNALSTRLLAEVKRGGRSWRQEYTNQVP-G 118

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
           PLE         GT ITF  DP IF     ++   + +  Q  A+L+  +      ++  
Sbjct: 119 PLEDLGPTSE-TGTTITFWADPDIFET-TTYNFETISRRLQEMAFLNKGLTLSLRDERVA 176

Query: 252 AEKYGIP--------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
            E+            +++ + +PGGL+ +++    ++  I   + +   +  G     VE
Sbjct: 177 DEETEADAEGKVARVKEKTYCYPGGLEDFVKHINGSKDPIHPSVISFDAKGTG---LEVE 233

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISD 360
            A+ W     P + ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  D
Sbjct: 234 VAMQWNNGFTPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDANLTGD 293

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D+      I+S+ + EP+F GQTKTKL + +A+  V+    +    +  +NP EA  ++ 
Sbjct: 294 DVREGLAAIVSIKLSEPQFEGQTKTKLGNSEAKTFVQQTSNEWLADWFERNPTEAKTIIN 353

Query: 421 WVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
             I  ++ R+  RK R+ V RK A+    LPGKL DC        EL+IVEGDSAGGSAK
Sbjct: 354 KSISSAQARMAARKARDLVRRKGALDIGGLPGKLKDCRSTNPEECELYIVEGDSAGGSAK 413

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           + R+   QA+LP+RGKI+NV  A  +++  N ++  L
Sbjct: 414 EGRDSRYQAILPIRGKIINVEKARIDRVLKNTEVQSL 450


>gi|10039319|dbj|BAB13320.1| DNA gyrase B subunit [Flexibacter sancti]
          Length = 481

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 186/485 (38%), Positives = 285/485 (58%), Gaps = 15/485 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D +TY++SGGLHGVG+S VNALS  LHVTV R+  +F Q++SRG+P   + +   V ++ 
Sbjct: 1   DKNTYKVSGGLHGVGVSCVNALSSLLHVTVRREGKLFEQEYSRGVPQYAVREIG-VSDET 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F+PD +IF D   ++   L    +  AYL+ +++      +E  E    P  E F
Sbjct: 60  GTTVHFKPDNEIFKDIT-YNKEILAGRLRELAYLNRKIRIVLIDAREKDENG-TPLTEIF 117

Query: 264 YFPGGLKTYLQTKLEN--RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
           Y  GG+  ++     N  R+ +  E    +T   G+    VE A+ + +     I SY N
Sbjct: 118 YSEGGIVEFVSMLDRNGRRNPLLPEPIFVETVDAGS-NVAVEVAVIYNDSFSENIFSYVN 176

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPE 378
            I T EGGTH +G R A+TR  K Y +  +   K  I +  DD       I+SV + EP+
Sbjct: 177 NINTIEGGTHVAGFRRAITRVFKSYGDKNKMFEKTKIEVTGDDFREGLSAIVSVKVPEPQ 236

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
           F GQTKTKL + D    V++++    D YL ++P EA  ++  V+  ++ R   RK R++
Sbjct: 237 FEGQTKTKLGNSDVMGVVDSSVAAVLDAYLEEHPREAKTIINKVVLAAQAREAARKARQM 296

Query: 439 NRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
            ++ + +    LPGKLADCS+N     EL++VEGDSAGG+AKQ RNRS QA+LPLRGKIL
Sbjct: 297 VQRKSVLSGSGLPGKLADCSENDPEKCELYLVEGDSAGGTAKQGRNRSFQAILPLRGKIL 356

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIA 552
           NV  A   KI  N++I ++  ALG    ++  ++      LRY K+IIMTDADVDG+HIA
Sbjct: 357 NVEKAMEHKIYENEEIKNIFTALGVTIGTEEDDKALNLAKLRYHKLIIMTDADVDGSHIA 416

Query: 553 SLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612
           +L+LTF ++ M  ++EQ ++++  PPL+ + +G + +YA  E+ ++  +++     +  +
Sbjct: 417 TLILTFIFRYMKAMVEQGYVYIAQPPLYLVKKGKEGIYAWTEDDRKGAVQQLANGKEDSV 476

Query: 613 EISRF 617
            I R+
Sbjct: 477 TIQRY 481


>gi|310780897|gb|ADP23924.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 451

 Score =  329 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 179/464 (38%), Positives = 261/464 (56%), Gaps = 17/464 (3%)

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133
           LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+ 
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVA 59

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + L
Sbjct: 60  LTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDL 119

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           E   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  E
Sbjct: 120 EVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGKE 177

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
                  E F + GG+ ++++    N+ ++  E    + +        VE  + + +   
Sbjct: 178 -------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNDSYN 227

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
             I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I+
Sbjct: 228 ENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIV 287

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV ++ P+F GQTKTKL + + +  VEN + D    +L +NP  A  ++E   + +  R 
Sbjct: 288 SVKLKNPQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARARE 347

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSAK  RN   QA+
Sbjct: 348 AARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAKSGRNSRFQAI 407

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           LPLRGKILNV  A  +KI +N++I  ++ ALG      +    L
Sbjct: 408 LPLRGKILNVEKARLDKILSNEEIRAMITALGTGVGDDFDISKL 451


>gi|310781175|gb|ADP24063.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 445

 Score =  329 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 177/454 (38%), Positives = 259/454 (57%), Gaps = 17/454 (3%)

Query: 73  ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
            LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+
Sbjct: 1   GLHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEV 59

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
            LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + +G+P + 
Sbjct: 60  ALTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHGKIYRQIYEKGVPKTD 119

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
           LE   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  
Sbjct: 120 LEVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGK 177

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
           E       E F + GG+ ++++    N+ ++  E    + +        VE  + + +  
Sbjct: 178 E-------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNDSY 227

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369
              I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I
Sbjct: 228 NENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAI 287

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           +SV ++ P+F GQTKTKL + + +  VEN + D    +L +NP  A  ++E   + +  R
Sbjct: 288 VSVKLKNPQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAR 347

Query: 430 LRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
              RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSAK  RN   QA
Sbjct: 348 EAARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAKSGRNSRFQA 407

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           +LPLRGKILNV  A  +KI +N++I  ++ ALG 
Sbjct: 408 ILPLRGKILNVEKARLDKILSNEEIRAMITALGT 441


>gi|294622315|ref|ZP_06701358.1| DNA topoisomerase 4 subunit B [Enterococcus faecium U0317]
 gi|291598207|gb|EFF29305.1| DNA topoisomerase 4 subunit B [Enterococcus faecium U0317]
          Length = 441

 Score =  329 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 146/409 (35%), Positives = 218/409 (53%), Gaps = 23/409 (5%)

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGI 342
            + +     EK+G     VE A  + +   E   S+ N + T +GGTHE+G++ A+T+  
Sbjct: 1   MTPVVYFSGEKEGI---EVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGMKAAMTKSY 57

Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVEN 398
            +YA       +R  ++   D       +LS+ + E   +F GQTK KL +  A+  V+N
Sbjct: 58  NEYARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTPVARTVVDN 117

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLAD 455
            + +    YL +N   +  L+   I+  E R   RK RE +R    RK     L GKL  
Sbjct: 118 VISEQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTP 177

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
                    EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I  N++I  
Sbjct: 178 AQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINT 237

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           ++  +G     ++  ED  Y+KVIIMTDAD DGAHI  LLLTFFY+ M  LIE   +++ 
Sbjct: 238 MIYTIGAGVGPEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIA 297

Query: 576 SPPLFRITQG---TKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
            PPL+++++G    + + YA  ++    ++++  K       + R+KGLGEM A QL ET
Sbjct: 298 LPPLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGK----GYMLQRYKGLGEMNAEQLWET 353

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            MD   RTL+RV I+         +  +  LMG K + R K+I+    F
Sbjct: 354 TMDPTSRTLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIENHVQF 398


>gi|19909543|dbj|BAB86967.1| DNA gyrase subunit B [Caulobacter sp. ATCC 15256]
          Length = 474

 Score =  329 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 175/482 (36%), Positives = 270/482 (56%), Gaps = 21/482 (4%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
           D   LHH+  EV+DNA+DE +AG+A+L+EV L+ +G +TV DNGRGIPV+ H +    S 
Sbjct: 3   DGSGLHHMVYEVVDNAIDEALAGHADLVEVILNADGSVTVTDNGRGIPVDIHAE-EGVSA 61

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALSD L + + R       KF RG  
Sbjct: 62  AEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLKLVIFRNGQRHEMKFERGDT 121

Query: 190 LSPLEKKEKV------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           +  L+   +       +   GT++TF P    F     FD   L    +  A+L+  V  
Sbjct: 122 VESLKVTGEAPMRENGKVLSGTQVTFYPSITTF-AHIDFDLKTLEHRLRELAFLNSGVVI 180

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
             +  +     +  P +   ++ GG++ +++   ++++ I  ++   + +K       ++
Sbjct: 181 KLADHR-----HPEPVEIMLHYEGGVEAFVRHLDKSKTPILKDVIVIRGKKDNI---EID 232

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISD 360
            A+ W +     +  + N I   +GGTH S  R +LT+ +  Y E +    K  ++   +
Sbjct: 233 LALWWNDSYHETMLCFTNNIPQRDGGTHLSAFRTSLTKVMGAYMESSGALKKEKVAPTGE 292

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D       +LSV + +P+F+ QTK KLVS + +  VE    +    +  ++P+EA  ++ 
Sbjct: 293 DAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGLCSEGLSQWFEEHPVEAKMVVA 352

Query: 421 WVI-ERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
            +I   S     R+ +    RK+A+    LPGKLADC +     +ELFIVEGDSAGGSAK
Sbjct: 353 KIIEAASAREAARKARDLTRRKSALDISSLPGKLADCQERDPAKSELFIVEGDSAGGSAK 412

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKV 538
           QARNR NQAVLPLRGKILNV  A  +++ +++ I  L+ ALG        + + LRY K+
Sbjct: 413 QARNRENQAVLPLRGKILNVERARFDRMLSSELIGTLILALGTGIGRDDFDADKLRYHKI 472

Query: 539 II 540
           I+
Sbjct: 473 IL 474


>gi|309799461|ref|ZP_07693695.1| DNA gyrase subunit B [Streptococcus infantis SK1302]
 gi|308116922|gb|EFO54364.1| DNA gyrase subunit B [Streptococcus infantis SK1302]
          Length = 393

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 145/390 (37%), Positives = 216/390 (55%), Gaps = 12/390 (3%)

Query: 299 RGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA--I 355
             TVE A+ +     E   S+ N I T EGGTHE G R ALTR I  YA   +  +    
Sbjct: 3   DITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALTRVINDYARKNKLLKDNED 62

Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415
           ++  +D+      ++SV    P+F GQTKTKL + +  +       + F  +L++NP  A
Sbjct: 63  NLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSDFLMENPQIA 122

Query: 416 TKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSA 474
            +++E  ++        +R +    +K+ +    LPGKLADCS N    TELFIVEGDSA
Sbjct: 123 KRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADCSSNNPAETELFIVEGDSA 182

Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
           GGSAK  R+R  QA+LP+RGKILNV  A  +KI  N++I  L  A+G    +++     R
Sbjct: 183 GGSAKSGRDREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGFGAEFDVSKAR 242

Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHD 593
           Y+K++IMTDADVDGAHI +LLLT  Y+ M  ++E  ++++  PP++ +  G++   Y   
Sbjct: 243 YQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYVYIAQPPIYGVKVGSEIKEYIQP 302

Query: 594 EEHKQKILEEFKK---HGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
              ++  L+E       G+ K  I R+KGLGEM   QL ET M+   R + RV ++    
Sbjct: 303 GADQETRLQEALARYSEGRSKPTIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDD--- 359

Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASF 680
              +     + LMG + + R +FI+E A +
Sbjct: 360 -AAEADKIFDMLMGDRVEPRREFIEENAVY 388


>gi|19909673|dbj|BAB87032.1| DNA gyrase subunit B [Paracoccus sp. PC1]
          Length = 467

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 173/476 (36%), Positives = 256/476 (53%), Gaps = 19/476 (3%)

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           HH+  EV+DN +DE +AG+A+ ++V +  +  ++V DNGRGIPV+ H      S  E+I+
Sbjct: 1   HHMVYEVVDNGIDEALAGHADFVQVKIHDDSSVSVRDNGRGIPVDMHA-SEGVSAAEVIM 59

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFD ++Y++SGGLHGVG+SVVNALSD L + + R       +F  G  +  L 
Sbjct: 60  TQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLELRIWRNGKEHFVRFEHGDTVEHLR 119

Query: 195 KKEKVRNKRGTRITFRPDPKIFGD-----KAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
                  + GT + F    K            +    L    +  A+L+  V+      +
Sbjct: 120 VVGDAPGETGTEVRFMASAKTNHPDGTFSNLEYSFKTLENRLRELAFLNSGVRIILEDAR 179

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
               +         ++ GG++ +++    +++ +  E      E+ G     VE A+ W 
Sbjct: 180 HAEVQRTE-----LFYEGGVREFVKYLDRSKTAVMPEPIFMTGERNGI---GVEVAMWWN 231

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISA 366
           +     +  + N I   +GGTH +G R ALTR I KYA+ +    K  +    DD     
Sbjct: 232 DSYHETVLPFTNNIPQRDGGTHMAGFRGALTRVIGKYAQDSGIAKKEKVDFTGDDAREGL 291

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             +LSV + +P+F+ QTK KLVS + +  VE  + +    +  +NP EA +++  +IE +
Sbjct: 292 TCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGLVGEKLAEWFEENPTEARQIVGKIIEAA 351

Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
             R   RK RE   RKTA+    LPGKLADC +     +ELFIVEGDSAGGSAKQ R+R 
Sbjct: 352 LAREAARKARELTRRKTAMDVASLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRSRQ 411

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVII 540
           NQAVLPLRGKILNV  A  +++ ++ QI  L+ ALG          + LRY K++I
Sbjct: 412 NQAVLPLRGKILNVERARFDRMLSSDQIGTLITALGTGIGRDEFSLKKLRYHKIVI 467


>gi|194339101|gb|ACF49466.1| GyrB [Amycolatopsis regifaucium]
          Length = 464

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 171/471 (36%), Positives = 264/471 (56%), Gaps = 19/471 (4%)

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           HHL  EV+DN++DE +AG+A  +EV+L  +G + VVD+GRGIPV+ HPK   K TLE++L
Sbjct: 1   HHLVQEVVDNSVDEAMAGHATKVEVTLLADGGVRVVDDGRGIPVDMHPK-EKKPTLEVVL 59

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFD+ +Y +SGGLHGVG+SVVNALS +L   V      + Q+++  +P    +
Sbjct: 60  TVLHAGGKFDSDSYAVSGGLHGVGVSVVNALSKKLLAEVKYGGRSWRQEYTDQLPGELED 119

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
                 +  GT ITF  D  IF     ++   + +  Q  A+L+  +      ++   E+
Sbjct: 120 L--GPADGTGTTITFWADGDIFET-TTYNFETISRRLQEMAFLNKGLTLSLRDERVADEE 176

Query: 255 YGIP--------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
                       +++ + +PGGL+ +++    ++  I   + + + +  G     VE A+
Sbjct: 177 TEEDASGQAARVKEKTYCYPGGLEDFVKHINGSKDPIHPNVISFEAKGTG---LEVEVAM 233

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W     P + ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  DD+ 
Sbjct: 234 QWNNGFTPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDANLTGDDVR 293

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                I+S+ + EP+F GQTKTKL + +A+  V+    +    +  +NP E   ++   I
Sbjct: 294 EGLAAIVSIKLSEPQFEGQTKTKLGNSEAKTFVQQTSNEWLADWFERNPTETKTIINKSI 353

Query: 424 ERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
             ++ R+  RK R+ V RK A+    LPGKL DC        EL+IVEGDSAGGSAK+ R
Sbjct: 354 SSAQARMAARKARDLVRRKGALEIGGLPGKLKDCRSTNPSECELYIVEGDSAGGSAKEGR 413

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           +   QA+LP+RGKI+NV  A  +++  N ++  L+ ALG     ++  E L
Sbjct: 414 DSMYQAILPIRGKIINVEKARIDRVLKNTEVQSLITALGTGIHDEFDLEKL 464


>gi|322816271|gb|EFZ24640.1| mitochondrial DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1231

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 134/672 (19%), Positives = 244/672 (36%), Gaps = 69/672 (10%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTDEK-----------------------ALHHLFSEVI 82
           AS  + L  ++ V +RP MY+G  D                          L  +  E++
Sbjct: 4   ASKYKKLTPIDHVLIRPEMYVGSVDTSSSSMFVFDHEKGRMVWESLKVNHGLLKIVDEIL 63

Query: 83  DNAMDEVIA--GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140
            NA D +    G    I V +   G +T+ ++G GIP+    K       E++   L   
Sbjct: 64  LNASDNIANKGGRMTYIRVHITEAGEITIENDGAGIPI-VRSKEHKLYIPEMVFGHLLTS 122

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI--PLSPLEKKEK 198
             +D+++     G HG G  + N LS    V    +   F   +   +    +P      
Sbjct: 123 SNYDDTSQNAVAGRHGYGAKLTNILSHRFSVCCRTKGKEFHMSWHDHMRRATAPRVSNVD 182

Query: 199 VRNKRGTRITFRPDPKIF----GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
            + K  TR+ F PD + F       +      L K     A +   ++   +        
Sbjct: 183 PKEKNLTRVKFLPDYERFGLDANKISHDMKRVLHKRIMDLAAMFPSIEISLNG------- 235

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE 314
                   F F       +     + S            + G     + +  +       
Sbjct: 236 ------VPFAFKSFADYAMLYSSPSSSGEMPPAPFVYESRNG----AIAFIPSLTAGTRR 285

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFI 374
           I    N ++T  GGTH +  +  L   ++   +  +    +   +  L    + +  V +
Sbjct: 286 IFGVVNGVVTHNGGTHCNAAQEVLQSSLESVEKALKKDNKVIDTNRVLRHFMILVFLVQV 345

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
           +   F  Q K +LVS+     V       F   L    +EA           E       
Sbjct: 346 QPK-FDSQNKARLVSVPTMPRVPRQELMDFL--LRMPFLEAHVNTVTGQLADELNKEMGA 402

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ---ARNRSNQAVLP 491
            R ++ K+ I  +          ++      L + EGDSA   A+    +  +    V P
Sbjct: 403 GRRMSSKSLISSITKLVDATTTRRDPRFVRTLIVTEGDSAKALAQNSLSSDQKRYTGVFP 462

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAH 550
           LRGK+LNV +   ++++N +++ +L  ALG      Y++ E+LRY+++++MTD D DG+H
Sbjct: 463 LRGKLLNVRNKNLKRLKNCKELQELFCALGLELGKIYKDAEELRYQRLLVMTDQDADGSH 522

Query: 551 IASLLLTFFYQEMYDLIEQ--KHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKH 607
           I  L++  F      L+ +    + + S P+ ++  +   +      +   K     K H
Sbjct: 523 IKGLVINAFEALWPSLLNRNPGFISIFSTPIVKVRLRDKSTHSFFSLKEFHKW---QKTH 579

Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667
           G        +KGLG    ++ KE   D +K T+  V    + N  K      +     + 
Sbjct: 580 GNVSYTAKYYKGLGTSTTAEGKEYFKDMDKHTMRLVV---ERNDHKLLDSVFD---SQEV 633

Query: 668 DERFKFIQE-RA 678
           + R  ++ +  A
Sbjct: 634 EWRKDWMTKANA 645


>gi|313844192|ref|YP_004061855.1| hypothetical protein OlV1_223c [Ostreococcus lucimarinus virus
           OlV1]
 gi|312599577|gb|ADQ91599.1| hypothetical protein OlV1_223c [Ostreococcus lucimarinus virus
           OlV1]
          Length = 1074

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 140/664 (21%), Positives = 248/664 (37%), Gaps = 76/664 (11%)

Query: 47  SSIRILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVID 83
            SI+ L  +E V  RP  Y+G  D                         AL  +F E++ 
Sbjct: 3   ESIQKLTHIEHVLKRPDSYVGPVDVSSEPYWLLHKTDNQFKKKNINYSPALLKIFDEILV 62

Query: 84  NAMDE--VIAGYANLIEVSLDGN-GFLTVVDNGR--GIPVENHPKFPNKSTLEIILTTLH 138
           NA+D   V       I V +D   G +T+ +NG   GI V  H K       E+    L 
Sbjct: 63  NAIDRNSVHPKSVTSISVGIDKETGAVTIENNGPLGGIGVRMHEK-EGVWNPELTFGHLL 121

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN--TIFSQKFSRGIPLSPLEKK 196
               +D++   I GG +G G  + N  S E  + +        ++QK+ + + +    K 
Sbjct: 122 TSTNYDDTKKRIVGGRNGYGAKLTNIYSSEFSIVIKDHEAKQTYTQKWEKNMTVCHPPKI 181

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
            K      + ++    P           A + K+ + + + +    T     K   E   
Sbjct: 182 TKHSGST-SSVSITFTPDWRRFGMKKMDANIYKIFEKRVWDANICTTPNCKVKFQGEVLP 240

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT 316
               E +                      ++  G  +            I   E   E  
Sbjct: 241 KTSFEAYA---------------------KMHEGVKDVCSVTTDRWSVCIGPSENGLEQV 279

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIRE 376
           S+ N I T +GGTH   +   L  GI +        + I +    +  +    +   I  
Sbjct: 280 SFVNGISTTKGGTHVDHVASLLASGIIEEMA-----KKIKLKPQQVKNTFNIFVKATIEN 334

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P F+ Q K++  S       +      F    ++  I+         +  +E  +    R
Sbjct: 335 PTFSSQVKSECTSKAQDFGSKFEPPKSFVKNALKTGIQDELTALSKFKEMKELSKSDGTR 394

Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLR 493
           +      I  +             +    L + EGDSA   A    +   R +  V PLR
Sbjct: 395 KSK----ITGIPKLDDANKAGTAQSGKCTLIVTEGDSAKTLAVAGLSVVGRDHYGVFPLR 450

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIA 552
           GK  NV  A   ++ +NQ+  DL + LG +    Y++  +LRY +++IMTDAD DG+HI 
Sbjct: 451 GKCKNVRDASVTQLTSNQEFNDLKKILGLQQGKDYQDVSELRYGRLMIMTDADNDGSHIK 510

Query: 553 SLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612
            L+L   +     L++   +  +  P+ + ++G++S   + +   +        +G+   
Sbjct: 511 GLILNMIHYFWPSLLKLGFVVSMVTPIIKASKGSQSKSFYTDSTFRSWY----GNGQPGW 566

Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
           +I  +KGLG   +++ +E      K   L V+ + D+ S +    + +K    KAD+R  
Sbjct: 567 KIKYYKGLGTSTSAEAREYF---KKIQDLTVKFDMDIMSDRSIVLAFDK---KKADDRKS 620

Query: 673 FIQE 676
           ++ E
Sbjct: 621 WLLE 624


>gi|308510362|ref|XP_003117364.1| CRE-TOP-2 protein [Caenorhabditis remanei]
 gi|308242278|gb|EFO86230.1| CRE-TOP-2 protein [Caenorhabditis remanei]
          Length = 1547

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 136/694 (19%), Positives = 254/694 (36%), Gaps = 85/694 (12%)

Query: 19  SSEKLKKSGEIPDSPAFANQSA-SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHL 77
           + E       I D    + + A  D Y   S      LE + +RP  YIG  +       
Sbjct: 41  TEEDRNVFTSIDDKKGGSKKMAIEDIYQKKS-----QLEHILLRPDTYIGSVEYT----- 90

Query: 78  FSEVIDNAMDEV--IAGYANLIEV----SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLE 131
                     E   I   +  I++        N  ++V +NG+GIPV  H K       E
Sbjct: 91  ----------EKTPIRLKSKRIKIPYLYRFRKNNRISVYNNGKGIPVTLH-KVEKVYVPE 139

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR--GIP 189
           +I  TL     +++   +++GG +G G  + N  S +  +  + ++     K +    + 
Sbjct: 140 LIFGTLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSTKFTLETSSKDFKSQFKQTWVKNMT 199

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLLKMTQSKAYLSGRVKTCWSC 247
                  +K  ++  TRITF+PD   F            + +     A  +  V    + 
Sbjct: 200 REKEPDIKKSDSEDFTRITFQPDLSKFKMDELDDDICHLMARRAYDVAGSTKGVTVFLNG 259

Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307
           ++   +              G + Y++      +     I     +         + A+A
Sbjct: 260 ERVPVK--------------GFEDYVKMYTSQFTNDGEPIKVAYEQ----VGDRWQVALA 301

Query: 308 WCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLM---- 363
             E+  +  S+ N+I T +GG H   +   +        +   +K A++I    +     
Sbjct: 302 LSEKGFQQVSFVNSIATTKGGRHVDYVADQMVAKFIDSIKRKLSKTAMNIKPFQIDPNSL 361

Query: 364 --------------ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
                               ++  I  P F  QTK  +     Q      L + F     
Sbjct: 362 NSSNTSICIHFQIKNHMWVFVNALIENPTFDSQTKETMTLQSKQFGSTCTLSEKFSK-AA 420

Query: 410 QNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
            N      ++ WV  R ++     K+    + + ++ +       D     +    L + 
Sbjct: 421 GNVGITDAVMSWV--RFKQMDDLNKKCSKTKTSKLKGIPKLEDANDAGTKNSQQCTLILT 478

Query: 470 EGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS 526
           EGDSA   A        R    V PLRGK+LNV     ++I +N +I  +++ LG + + 
Sbjct: 479 EGDSAKTLAVSGLAVVGRDKFGVFPLRGKLLNVRDGNMKQIADNAEINAMIKILGLQYKK 538

Query: 527 QYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI 582
           +Y  ED    LRY K+++M D D DG+HI  L++ F +     LI++  +     P+ + 
Sbjct: 539 KYETEDDFKTLRYGKMMVMADQDQDGSHIKGLVINFVHHFWPSLIQRNFVEEFITPIVKA 598

Query: 583 TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLR 642
           ++G + V         +             +I  +KGLG   + + KE   D  +   ++
Sbjct: 599 SKGKEEVSFFSIPEYSEW--RMNTDNWKTYKIKYYKGLGTSTSKEAKEYFSDMLRHR-IK 655

Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
            +     + +   + + +K    K DER  ++ +
Sbjct: 656 FKYGGAEDDMA-VEMAFSK---KKIDERKDWLTK 685


>gi|13516985|dbj|BAB40375.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04449]
          Length = 478

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 185/484 (38%), Positives = 281/484 (58%), Gaps = 16/484 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  TY++SGGLHGVG+S VNALS +L  TV R+ T++ Q++SRGIP   +++  K  +  
Sbjct: 1   DKDTYKVSGGLHGVGVSCVNALSHKLVATVHRKGTVYQQEYSRGIPQYDVKEIGKT-DVN 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F PDP+IF     +    +    +  +YL+  +K   +  ++  +       E F
Sbjct: 60  GTIVHFYPDPEIFTVT-EYKYDTVASRLRELSYLNAGIKIDLTDKRDKDDDG-NYLGETF 117

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           +  GGL+ ++Q   E+R  +  E    + EK       V+ A+++       + SY N I
Sbjct: 118 FSEGGLQEFVQYLDESRETLIEEPIYIEGEKNEVP---VQVAMSYNTSYAEHVVSYVNNI 174

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R ALTR +K YA+ +    K  + I  DD       ++SV + EP+F 
Sbjct: 175 NTIEGGTHVSGFRRALTRTLKAYADRSGLLDKVKVEISGDDFREGLTAVISVKVAEPQFE 234

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + D    VE+A+ D    YL ++P  A +++  V+  ++ R   RK RE+ +
Sbjct: 235 GQTKTKLGNSDVTGAVESAVGDVLSTYLEEHPKSARQIVAKVVLAAQARHAARKAREMVQ 294

Query: 441 KTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +   +    LPGKLADC+   A  +EL++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV
Sbjct: 295 RKNVMSGSGLPGKLADCASKDATISELYLVEGDSAGGSAKQGRDRHFQAILPLRGKILNV 354

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASL 554
             A   KI +N++I +++ ALG    ++        E LRY K++IMTDAD+DG+HI +L
Sbjct: 355 EKAQEHKIYDNEEIKNMITALGVSFGTEEDEKALNMEKLRYHKIVIMTDADIDGSHIRTL 414

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIE 613
           +LTFF++ M  LI+  +L++  PPL+ + +G +  Y  DE+ + +   E  K GK   + 
Sbjct: 415 ILTFFFRYMKPLIDAGYLYIALPPLYLLKRGKELRYCWDEQQRAQFTMEMAKDGKEDSVA 474

Query: 614 ISRF 617
           + R+
Sbjct: 475 VQRY 478


>gi|311337327|gb|ADP89913.1| DNA gyrase subunit B [Amycolatopsis ultiminotia]
          Length = 470

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 181/477 (37%), Positives = 269/477 (56%), Gaps = 19/477 (3%)

Query: 71  EKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTL 130
           E+ LHHL  EV+DN++DE +AGYA  +EV+L  +G + VVD+GRGIPV+ HPK   K TL
Sbjct: 1   ERGLHHLVQEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVDLHPK-EQKPTL 59

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E++LT LHAGGKFD+ +Y +SGGLHGVG+SVVNALS +L   +      + Q+++  IP 
Sbjct: 60  EVVLTILHAGGKFDSDSYAVSGGLHGVGVSVVNALSTKLLAEIKVGGRSWRQEYTDQIP- 118

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            PLE         GT ITF  D +IF     ++   + +  Q  A+L+  +      ++ 
Sbjct: 119 GPLEDLGPATE-TGTTITFWADSEIFET-TTYNFENISRRLQEMAFLNKGLTLSLRDERV 176

Query: 251 IAEKYGIP--------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
             E+            +++ + +PGGL+ +++    ++  I + + +   +  G     V
Sbjct: 177 ADEEAEQDAEGKQARVKEKVYCYPGGLEDFVKHINGSKDPIHASVISFDAKGTG---LEV 233

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359
           E A+ W     P + ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  
Sbjct: 234 EVAMQWNTGFTPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDANLTG 293

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD+      I+S+ + EP+F GQTKTKL + +A+  V+    +    +  +NP EA  ++
Sbjct: 294 DDVREGLAAIVSIKLSEPQFEGQTKTKLGNSEAKTFVQQQSNEWLTDWFERNPAEAKTII 353

Query: 420 EWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
              I  S+ RL  RK R+ V RK A+    LPGKL DC  N     EL+IVEGDSAGGSA
Sbjct: 354 NKSISSSQARLAARKARDLVRRKGALEIGGLPGKLKDCRSNDPGECELYIVEGDSAGGSA 413

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           K+ R+   QA+LP+RGKI+NV  A  +++  N ++  L+ ALG            RY
Sbjct: 414 KEGRDSMYQAILPIRGKIINVEKARIDRVLKNTEVQSLITALGTGIHDDSTLRSCRY 470


>gi|309800098|ref|ZP_07694291.1| DNA topoisomerase 4 subunit B [Streptococcus infantis SK1302]
 gi|308116265|gb|EFO53748.1| DNA topoisomerase 4 subunit B [Streptococcus infantis SK1302]
          Length = 376

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 137/376 (36%), Positives = 208/376 (55%), Gaps = 19/376 (5%)

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
            S+ N + T +GGTHE+GL+ A+T+ +  YA       ++  ++   D       +LS+ 
Sbjct: 1   MSFVNNVRTKDGGTHETGLKSAITKVMNDYARKIGLLKEKDKNLEGSDYREGLAAVLSIL 60

Query: 374 IR--EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           +     +F GQTK KL S  A+  V+  + D    +L++N   A+ L+   I+  + R  
Sbjct: 61  VPEEHLQFEGQTKDKLGSPLARPVVDGIVADKLTFFLMENGELASNLIRKAIKARDAREA 120

Query: 432 RRKQREVNRKTAIRKLRL---PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
            RK R+ +R     K       GKL           EL++VEGDSAGGSAKQ R+R  QA
Sbjct: 121 ARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQA 180

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           +LPLRGK++N A A    I  N++I  ++  +G    + +  ED  Y+K+IIMTDAD DG
Sbjct: 181 ILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSLEDANYDKIIIMTDADTDG 240

Query: 549 AHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEF 604
           AHI +LLLTFFY+ M  L+E  H+++  PPL+++++G     +  YA  +   +++ ++F
Sbjct: 241 AHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQF 300

Query: 605 KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMG 664
            K       + R+KGLGEM A QL ET M+   RTL+RV I      L   +  +N LMG
Sbjct: 301 GKGA----TLQRYKGLGEMNADQLWETTMNPETRTLIRVTIED----LARAERRVNVLMG 352

Query: 665 TKADERFKFIQERASF 680
            K + R K+I++   F
Sbjct: 353 DKVEPRRKWIEDNVKF 368


>gi|13358814|dbj|BAB33153.1| DNA gyrase B subunit [Chitinophaga pinensis]
          Length = 481

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 184/485 (37%), Positives = 283/485 (58%), Gaps = 15/485 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D +TY++SGGLHGVG+S VNALSD+LHVTV R+  +F Q++ RG+P   + +     +  
Sbjct: 1   DKNTYKVSGGLHGVGVSCVNALSDKLHVTVRREGKLFEQEYQRGVPQYAVREIG-TSDST 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F+PD +IF +   ++   L    +  AYL+ ++K   + D+E  E  G    E F
Sbjct: 60  GTTVHFKPDNEIFKETI-YNREILAGRLRELAYLNRKIKITLTDDREKDE-AGNSVTETF 117

Query: 264 YFPGGLKTYLQTKLEN--RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
           Y  GG+  ++Q    N  R+ +  +    +     +    VE A+ + +     I SY N
Sbjct: 118 YSEGGIIEFVQMLDRNGRRNGLLPDPIFIEAH-DASSNVAVEVAVIYNDSFSENIFSYVN 176

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPE 378
            I T EGGTH +G R A+TR  K Y +  +   K  I +  DD       I+SV + EP+
Sbjct: 177 NINTIEGGTHVAGFRRAITRIFKSYGDKNKMFEKTKIEVTGDDFREGLSAIISVKVPEPQ 236

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
           F GQTKTKL + D    V++++    D YL ++P EA  ++  V+  ++ R   RK R++
Sbjct: 237 FEGQTKTKLGNSDVMGVVDSSVAAVLDAYLEEHPREAKIIINKVVLAAQAREAARKARQM 296

Query: 439 NRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
            ++ + +    LPGKLADCS+N     EL++VEGDSAGG+AKQ RNRS QA+LPLRGKIL
Sbjct: 297 VQRKSVLSGSGLPGKLADCSENDPEKCELYLVEGDSAGGTAKQGRNRSFQAILPLRGKIL 356

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIA 552
           NV  A   KI  N++I ++  ALG    ++  ++      LRY K+IIMTDADVDG+HIA
Sbjct: 357 NVEKAMEHKIYENEEIKNIFTALGVTIGTEEDDKALNLSKLRYHKLIIMTDADVDGSHIA 416

Query: 553 SLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612
           +L+LTF ++ M  ++EQ ++++  PPL+ + +  + +YA  EE ++  + +     +  +
Sbjct: 417 TLILTFIFRYMKAMVEQGYVYIAQPPLYLVKKSKEQIYAWTEEDRKAAIAKIAGGKEDSV 476

Query: 613 EISRF 617
            I R+
Sbjct: 477 TIQRY 481


>gi|454038|gb|AAA58940.1| DNA gyrase b subunit [Borrelia burgdorferi]
          Length = 385

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 142/390 (36%), Positives = 216/390 (55%), Gaps = 13/390 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY AS+I++L+GLE VR RPGMYIG      LHHL  EV+DN++DE +A + + I+V ++
Sbjct: 6   NYVASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLVYEVVDNSIDEALAAFCDRIDVIIN 65

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV+DNGRGIP + H +     TLE++LT LH+GGKF+  TY++SGGLHGVGISVV
Sbjct: 66  LDNTITVIDNGRGIPTDIHEEEGISVTLELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 125

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L V V R   IF Q FS+GIP S +E   +     GT++TF  D +IF     +
Sbjct: 126 NALSSFLEVYVNRDGKIFRQTFSKGIPTSKVEVVGESS-VTGTKVTFLADSEIFET-LDY 183

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L K  +  A+L+ ++       +   EK        FYF GG+K+++     +   
Sbjct: 184 NFDVLEKRLKELAFLNDKIYISIEDKRIGKEKSSK-----FYFEGGIKSFVDYLTNDSKA 238

Query: 283 ISSEIFTGKTE-KKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
             SE +              ++W  ++ +    I S+ N I T EGGTH  G R  LT+ 
Sbjct: 239 FQSEPYYIDGFINDVIVNVGLKWTESYSD---NILSFVNNINTREGGTHVMGFRSGLTKA 295

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + +  + ++   K   ++  DD       ++SV + EP+F GQTK+KL + + ++ VE  
Sbjct: 296 MNEAFKNSKISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIRKIVEVV 355

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           + +     +  NP+E   +L   I+ +  R
Sbjct: 356 VYEHLLEIINLNPLEIDTILGKAIKAARAR 385


>gi|227328542|ref|ZP_03832566.1| DNA gyrase subunit B [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 334

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 121/344 (35%), Positives = 196/344 (56%), Gaps = 15/344 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY   I +
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIII 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEE-EGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L + + R   +  Q +  G+  +PL    +  N+ GT + F P  + F + 
Sbjct: 121 SVVNALSEKLKLVIHRDGKLHEQTYKHGVAQAPLAVTGET-NRTGTTVRFWPSHETFTNV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V      ++E        + + +++ GG+K ++     N
Sbjct: 180 VEFEYEILAKRLRELSFLNSGVSIRLIDEREKD------KADHYHYDGGIKAFVDYLNRN 233

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   +F   T K       VE A+ W +     I  + N I   +GGTH +G R A+
Sbjct: 234 KTPIHPNVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 290

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
           TR +  Y +      K  +S   DD     + ++SV + +P+F+
Sbjct: 291 TRTLNTYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFS 334


>gi|11386843|sp|Q9LCK0|GYRB_CYTAU RecName: Full=DNA gyrase subunit B
 gi|6939976|dbj|BAA90687.1| DNA gyrase subunit B [Cytophaga aurantiaca]
          Length = 478

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 174/484 (35%), Positives = 271/484 (55%), Gaps = 16/484 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALS ++ VTV     +  Q++ +GIP   +++  +     
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSTDMKVTVYSHGKVHQQEYKKGIPQYDVKEIGE-SEIH 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT++ F PD  IF     +    +    +  ++L+  ++      +E  +  G  E E F
Sbjct: 60  GTKVQFLPDDSIFTSS-EYKYETIANRLRELSFLNKGIRITLQDHRE-VDADGKSEIETF 117

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTI 322
           +  GGL+ +++     R  +       +++K       VE A+ +     E   SY N I
Sbjct: 118 HSEGGLREFVEYVDSTRERLIPRPLYMESDKGPIP---VEVAMLYNTSYSENVFSYVNNI 174

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH +G R ALTR +K YA+ +    K  + +  DD       ++SV ++EP+F 
Sbjct: 175 NTVEGGTHVAGFRRALTRTLKSYADKSGMLEKLKMEVTGDDFREGLTAVISVKVQEPQFE 234

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + D    V+  + +  + YL +NP EA  +++ VI  ++ R   RK RE+ +
Sbjct: 235 GQTKTKLGNSDVMGAVDQVVGEMLNTYLEENPKEAKIIVQKVILAAQARNAARKAREMVQ 294

Query: 441 KTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +   +    LPGKLADCS++     E+++VEGDSAGGSAKQ R+R   A+LPLRGKILNV
Sbjct: 295 RKNVLSGSGLPGKLADCSESDPEKCEIYLVEGDSAGGSAKQGRDRKYHAILPLRGKILNV 354

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASL 554
             A   +I  N +I +++ ALG    ++          LRY KVIIMTDAD+DG+HI +L
Sbjct: 355 EKAQEHRIYENDEIKNMITALGVSFGTEEGEKVLNLTKLRYHKVIIMTDADIDGSHIRTL 414

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIE 613
           +LTFF++ M  LI+  H+++  PPL+ + +G +  Y   EE ++  ++E  K GK   + 
Sbjct: 415 ILTFFFRYMRALIDGGHVYIAQPPLYLVKRGKEEKYCWTEEQREVAVKELAKDGKEDSVG 474

Query: 614 ISRF 617
           I R+
Sbjct: 475 IQRY 478


>gi|13517051|dbj|BAB40408.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04477]
          Length = 474

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 182/483 (37%), Positives = 270/483 (55%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALSD L  TV R+  I+ Q++ RG  + P++   K  +  
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDHLKATVHREGKIWEQEYERGKTMYPVKSVGKT-DIT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF PD  IF     ++   L    +  AYL+  V       +   +K      E F
Sbjct: 60  GTIVTFVPDKSIFTQTVEYNYDTLANRMRELAYLNKGVTITLLDKRNKDDKG-EFVSETF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTI 322
           +   GLK +++   E R  +   + + + EK G     VE A+ +     E    Y N I
Sbjct: 119 FSNEGLKEFIKFLDETREPLIQSVISMEGEKNGIP---VEVAMIYNTGFSENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KKYA+ +    K    +  DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLSGFRRGLTSTLKKYADSSGMLDKLKFEVSGDDFREGLTAIVSVKVAEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +    V  A+ +   +YL ++P +A  +++ VI  ++ R    K RE+ +
Sbjct: 236 GQTKTKLGNREVTSAVSQAVSEMLTNYLEEHPDDAKSVVQKVILAAQARHAAAKAREMVQ 295

Query: 441 KTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +   +    LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV
Sbjct: 296 RKNPMSVGGLPGKLSDCSEQDPTKCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-----RSQYREEDLRYEKVIIMTDADVDGAHIASL 554
             A   K+  N++I ++  ALG              E LRY KV+IM DADVDG+HI +L
Sbjct: 356 EKAMQHKVFENEEIKNIYTALGVTIGTEEDSKPLNLEKLRYHKVVIMCDADVDGSHIETL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +LIE  H+++ +PPL+ + +G+K  YA +++ + +I+E      KG   I
Sbjct: 416 ILTFFFRYMRELIEGGHVYIATPPLYLVKKGSKRRYAWNDQERDEIVESM----KGGASI 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|13517001|dbj|BAB40383.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04443]
 gi|13517067|dbj|BAB40416.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC05558]
          Length = 474

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 183/483 (37%), Positives = 273/483 (56%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALSD L  TV R+  I+ Q++ RG  L P++   +  +  
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDHLKATVHREGKIWEQEYERGKTLYPVKSIGET-DIT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF PD  IF     ++   L    +  AYL+  V    +  +   +K      E F
Sbjct: 60  GTIVTFVPDKSIFTQTVEYNYDTLANRMRELAYLNKGVTITLTDKRNKDDKG-EFVAETF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTI 322
           +   GLK +++   E R  +   + + + EK G     VE A+ +     E    Y N I
Sbjct: 119 FSNEGLKEFIKFLDETREPLIQSVISMEGEKNGIP---VEVAMIYNTGFSENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KKYA+ +    K    +  DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLSGFRRGLTSTLKKYADSSGMLDKLKFEVSGDDFREGLTAIVSVKVAEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +    V  A+ +   +YL ++P +A  +++ VI  ++ R    K RE+ +
Sbjct: 236 GQTKTKLGNREVTSAVSQAVSEMLTNYLEEHPDDAKSVVQKVILAAQARHAAAKAREMVQ 295

Query: 441 KTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +   +    LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV
Sbjct: 296 RKNPMSVGGLPGKLSDCSEQDPTKCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASL 554
             A   K+  N++I ++  ALG    ++        E LRY KV+IM DADVDG+HI +L
Sbjct: 356 EKAMQHKVFENEEIKNIYTALGVTIGTEEDSKALNLEKLRYHKVVIMCDADVDGSHIETL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +LIE  H+++ +PPL+ + +GTK  YA +++ + +I+E      KG   I
Sbjct: 416 ILTFFFRYMRELIEGGHVYIATPPLYLVKKGTKRRYAWNDKERDEIVESM----KGGASI 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|71650226|ref|XP_813815.1| mitochondrial DNA topoisomerase II [Trypanosoma cruzi strain CL
           Brener]
 gi|70878735|gb|EAN91964.1| mitochondrial DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1230

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 137/672 (20%), Positives = 246/672 (36%), Gaps = 69/672 (10%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTDEK-----------------------ALHHLFSEVI 82
           AS  + L  ++ V +RP MY+G  D                          L  +  E++
Sbjct: 4   ASKYKKLTPIDHVLIRPEMYVGSVDTSSSSMFVFDHEKGRMVWESLKVNHGLLKIVDEIL 63

Query: 83  DNAMDEVIA--GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140
            NA D +    G    I V +   G +T+ ++G GIP+    K       E++   L   
Sbjct: 64  LNASDNIANKGGRMTYIRVHITEAGEITIENDGAGIPI-VRSKEHKLYIPEMVFGHLLTS 122

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI--PLSPLEKKEK 198
             +D+++     G HG G  + N LS    V    +   F   +   +    +P      
Sbjct: 123 SNYDDTSQNAVAGRHGYGAKLTNILSHRFSVCCRTKGKEFHMSWHDHMRRATAPRVSNVD 182

Query: 199 VRNKRGTRITFRPDPKIF----GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
            R K  TR+ F PD + F       +      L K     A +   ++   +        
Sbjct: 183 PREKNLTRVKFLPDYERFGLDANKISHDMKRVLHKRIMDLAAMFPSIEISLNG------- 235

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE 314
                   F F       +       S            + G     + +  +       
Sbjct: 236 ------VPFAFKSFADYAMLYSSPTSSGEMPPAPFVYESRNG----AIAFIPSLTAGTRR 285

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFI 374
           I    N ++T  GGTH +  +  L   + +  E    K    I ++ ++     ++ +  
Sbjct: 286 IFGVVNGVVTHNGGTHCNAAQEVLQSSL-ENVEKALKKDNKVIDTNRVLRHFTILVFLVQ 344

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            +P+F  Q K +LVS+     V       F   L    +EA           E       
Sbjct: 345 VQPKFDSQNKARLVSVPTMPRVPRQELMDFL--LRMPFLEAHVNTVTGQLADELNKEMGA 402

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ---ARNRSNQAVLP 491
            R ++ K+ I  +          ++      L + EGDSA   A+    +  +    V P
Sbjct: 403 GRRMSSKSLISSITKLVDATTTRRDPRFVRTLIVTEGDSAKALAQNSLSSDQKRYTGVFP 462

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAH 550
           LRGK+LNV +   ++++N +++ +L  ALG      Y++ E+LRY+++++MTD D DG+H
Sbjct: 463 LRGKLLNVRNKNLKRLKNCKELQELFCALGLELGKIYKDAEELRYQRLLVMTDQDADGSH 522

Query: 551 IASLLLTFFYQEMYDLIEQ--KHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKH 607
           I  L++  F      L+ +    + + S P+ ++  +   +      +   K     K H
Sbjct: 523 IKGLVINAFEALWPSLLNRNPGFISIFSTPIVKVRLRDKSTHSFFSLKEFHKW---QKTH 579

Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667
           G        +KGLG    ++ KE   D +K T+  V    + N  K      +     + 
Sbjct: 580 GNVSYTAKYYKGLGTSTTAEGKEYFKDMDKHTMRLVV---ERNDHKLLDSVFD---SQEV 633

Query: 668 DERFKFIQE-RA 678
           + R  ++ +  A
Sbjct: 634 EWRKDWMTKANA 645


>gi|310781235|gb|ADP24093.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 452

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 177/465 (38%), Positives = 261/465 (56%), Gaps = 17/465 (3%)

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133
           LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+ 
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVA 59

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + L
Sbjct: 60  LTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDL 119

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           E   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  E
Sbjct: 120 EVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGKE 177

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
                  E F + GG+ ++++    N+ ++  E    + +        VE  + +     
Sbjct: 178 -------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNNSYN 227

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
             I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I+
Sbjct: 228 ENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIV 287

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV ++ P+F GQTKTKL + + +  VEN + +    +L +NP  A  ++E   + +  R 
Sbjct: 288 SVKLKNPQFEGQTKTKLGNSEMRSIVENVVTEKLTAFLEENPSVAKIIVEKATQAARARE 347

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSAK  RN   QA+
Sbjct: 348 AARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAKSGRNSRFQAI 407

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
           LPLRGKILNV  A  +KI +N++I  ++ ALG     ++    + 
Sbjct: 408 LPLRGKILNVEKARLDKILSNEEIRAMITALGTGVGDEFDISKVS 452


>gi|13516989|dbj|BAB40377.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC01599]
          Length = 478

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 182/484 (37%), Positives = 273/484 (56%), Gaps = 16/484 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  TY++SGGLHGVG+S VNALS +L  TV R   I  Q+F  GIP  P ++  K  ++R
Sbjct: 1   DKDTYKVSGGLHGVGVSCVNALSTDLKATVYRNGVITEQEFKIGIPQYPAKETGKT-DRR 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT I F+PD  IF     +    +    +  AYL+  ++      +E  E+ G P+ +EF
Sbjct: 60  GTTIHFKPDDSIFTVT-EYKYETIANRLREMAYLNAGIRIFLKDLRE-IEEDGNPKSDEF 117

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTI 322
           Y  GGL  ++Q   E R  I       ++  +      V+ A+++     E   SY NTI
Sbjct: 118 YSEGGLVEFVQYLDETREKIIEAPIYIESIDQDVP---VQVAMSYNSSYSENVVSYVNTI 174

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH +G R ALTR +K YA+ +    K  I +  DD       ++SV + EP+F 
Sbjct: 175 NTYEGGTHVTGFRRALTRTLKSYADKSGMLDKLKIEVSGDDFREGLTAVISVKVAEPQFE 234

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + D    V++A+ +    +L ++P EA  ++  VI  ++ R   RK RE+ +
Sbjct: 235 GQTKTKLGNSDVVGAVDSAVSEVLQTWLEEHPKEAKTIVGKVILAAQARHAARKAREMVQ 294

Query: 441 KTAIRKLRLPGKL-ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +          ADC+ +     EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV
Sbjct: 295 RKNVLGGGGLPGKLADCANSDPTVCELYLVEGDSAGGSAKQGRDRDFQAILPLKGKILNV 354

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL-----RYEKVIIMTDADVDGAHIASL 554
             A   KI +N +I +++ ALG +  +   +++L     RY K+IIMTDAD+DG+HI +L
Sbjct: 355 EKAHEHKIYDNDEIKNILTALGVKFGTVNDDKELDLAGLRYHKIIIMTDADIDGSHIRTL 414

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIE 613
           +LT F++ M  LIE  ++++  PPL+ + +G    Y   EE ++ ++ E  K GK   + 
Sbjct: 415 ILTLFFRYMRPLIENGYIYIALPPLYLLKRGKDERYCWTEEERKVLISEMAKDGKEDSVN 474

Query: 614 ISRF 617
           I R+
Sbjct: 475 IQRY 478


>gi|314055306|ref|YP_004063644.1| DNA topoisomerase II [Ostreococcus tauri virus 2]
 gi|313575197|emb|CBI70210.1| DNA topoisomerase II [Ostreococcus tauri virus 2]
          Length = 1072

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 134/662 (20%), Positives = 233/662 (35%), Gaps = 72/662 (10%)

Query: 47  SSIRILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVID 83
            SI+ L  +E V  RP  Y+G  D                         AL  +F E++ 
Sbjct: 3   ESIQKLTHIEHVLKRPDSYVGPVDIGSESYWIFHKTDNQFKKKNVNYSPALLKIFDEILV 62

Query: 84  NAMDE--VIAGYANLIEVSLDGN-GFLTVVDNGR--GIPVENHPKFPNKSTLEIILTTLH 138
           NA+D   V       I   +D   G +T+ +NG   GI V  H K       E+    L 
Sbjct: 63  NAIDRNSVHPKSVTSISAGIDKETGSITIENNGPLGGIGVRMHEK-EGIWNPELTFGHLL 121

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
               +D++   I GG +G G  + N  S E  + +    T           ++     + 
Sbjct: 122 TSTNYDDTKKRIVGGRNGYGAKLTNIYSSEFSIVIKDGETKQCYTQKWNNNMTVCHPPKI 181

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
            ++   T                F      K        +   K      +         
Sbjct: 182 TKHSASTSSVSIT----------FIPDW--KRFGMNKMDASIYKIFE--KRVWDANICTT 227

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSY 318
              +  F G        +   +      +  G T+            I   +   E  S+
Sbjct: 228 PNCKVKFQGEALPKTSFEAYAK------MHEGVTDVCSVTTDRWSVCIGPSDNGLEQVSF 281

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPE 378
            N I T +GGTH   +   L  GI          + I +    +  +    +   +  P 
Sbjct: 282 VNGISTTKGGTHVDHVASYLAAGIIDEMA-----KKIKLKPQQVKNTFNIFVKATLENPT 336

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
           F+ Q K++  S       +      F    ++  I+         +   E  +    R+ 
Sbjct: 337 FSSQVKSECTSKTQDFGSKFEPPKNFVKNALKTGIQDELTALSKFKEMRELKKTDGARKS 396

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGK 495
                I  +             +    L + EGDSA   A    +   R +  V PLRGK
Sbjct: 397 K----ITGIPKLDDANKAGTAQSGKCTLIVTEGDSAKTLAVAGLSVVGRDHYGVFPLRGK 452

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASL 554
             NV  A   ++ +NQ+  DL + LG +    Y++  +LRY +++IMTDAD DG+HI  L
Sbjct: 453 CKNVRDASVAQLTSNQEFNDLKKILGLQQGKDYQDVSELRYGRLMIMTDADNDGSHIKGL 512

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +L   +     L++   +  +  P+ + ++G +S   + +   +         G+   +I
Sbjct: 513 ILNMIHYFWPSLLKLGFVVSMVTPIIKASKGGQSKSFYTDSAFRTWY----GSGQAGWKI 568

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
             +KGLG   +++ +E      K   L V+ + D+ + K    + +K    KAD+R  ++
Sbjct: 569 KYYKGLGTSTSAEAREYF---KKIQDLTVKFDMDIMTDKSIILAFDK---KKADDRKSWL 622

Query: 675 QE 676
            E
Sbjct: 623 LE 624


>gi|28866792|dbj|BAC65174.1| DNA gyrase B subunit [Cellulophaga baltica]
          Length = 475

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 184/483 (38%), Positives = 269/483 (55%), Gaps = 18/483 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVG+S VNALS  L  TV R  TI+ Q++ +G  L P++   +    RG
Sbjct: 1   DKFYRVSGGLHGVGVSCVNALSTHLKATVFRNGTIYEQEYEKGKALYPVKSIGET-EIRG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE-KEEF 263
           T +TF PD  IF     F    L    +  +YL+  V    +  ++  +       +E F
Sbjct: 60  TEVTFYPDETIFTQTTEFSYETLSNRMRELSYLNKGVAITMTDKRQKDKDSPSGFLEERF 119

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTI 322
           +   GLK +++    NR  + + + + + EK G     VE A+ +     E    Y N I
Sbjct: 120 FSEEGLKEFIKFLDGNREPLINGVISMEGEKNGIP---VEVAMVYNTSYTENLHSYVNNI 176

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F 
Sbjct: 177 NTHEGGTHLSGFRRGLTSTLKKYADASGMLDKLKFEIQGDDFREGLTAIISVKVGEPQFE 236

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + +    V  A+ +    YL +NP +A  +++ V+  +  R    K RE+  
Sbjct: 237 GQTKTKLGNREVSAAVSQAVSEMLSDYLEENPDDAKVIVQKVVLAATARHAATKAREMVQ 296

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKL+DCS       E+F+VEGDSAGG+AKQ R+R  QA+LPLRGKILNV
Sbjct: 297 RKTVMSIGGLPGKLSDCSDQDPVNCEVFLVEGDSAGGTAKQGRDRMFQAILPLRGKILNV 356

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASL 554
             A + K+  N++I ++  ALG    ++        + LRY KV+IM DADVDG+HI +L
Sbjct: 357 EKAMTHKVFENEEIKNIYTALGVTIGTEEDSKALNLDKLRYHKVVIMCDADVDGSHIETL 416

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +LIE  H+++ +PPL+ + +GTK  YA +++ + +I E F     G + I
Sbjct: 417 ILTFFFRYMRELIEGGHVYIATPPLYLVKKGTKKRYAWNDKERDEIAESF----NGSVGI 472

Query: 615 SRF 617
            R+
Sbjct: 473 QRY 475


>gi|9971355|dbj|BAB12484.1| DNA gyrase B subunit [Psychroflexus gondwanensis]
          Length = 474

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 183/483 (37%), Positives = 282/483 (58%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+SVVNALS +LH  V +   ++ Q++ RG  + P++        +
Sbjct: 1   DKDSYKVSGGLHGVGVSVVNALSIKLHARVFKDGRVWEQEYERGKAIYPVKSTGDT-ELK 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT ITF+PD +IF +   F    L K  +  ++L+  +K      ++  +       +EF
Sbjct: 60  GTEITFKPDYEIFQESVEFKYETLAKRLRELSFLNKGIKISIIDKRQTNDDG-EYRHDEF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTI 322
           Y   GLK +++   +NR  I +++ + ++EK       VE A+ +     E    Y N I
Sbjct: 119 YSEEGLKEFIRFIDQNREPIITDVISMESEKNDIP---VEVAMVYNSSYSENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KKYA+ +    K    I  DD       I+SV +  P+F 
Sbjct: 176 NTHEGGTHLSGFRRGLTATLKKYADNSGLLDKLKFEITGDDFREGLTAIVSVKVANPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + +    V  A+ +  + YL +NP +A  +++ V+  ++ R   +K RE+  
Sbjct: 236 GQTKTKLGNRELTSAVSQAVTEMLEIYLEENPNDAKTIVQKVMLAAQARHAAKKAREMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R  QA+LPLRGKILNV
Sbjct: 296 RKTVMSGGGLPGKLSDCSEQDPEACEVFLVEGDSAGGTAKQGRDRKFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASL 554
             A   ++  N++I ++  ALG    ++   +      LRY KVIIM DADVDG+HIA+L
Sbjct: 356 EKAMQHRVFENEEIKNIYTALGVTIGTEEDSKALNLSKLRYHKVIIMCDADVDGSHIATL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +LIE  H+++ +PPL+ I +G+K  YA +E+ + +I++E+    K  + +
Sbjct: 416 ILTFFFRYMKELIEASHIYIATPPLYLIKKGSKKRYAWNEKERNEIVKEY----KTSVSV 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|13517039|dbj|BAB40402.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04471]
          Length = 474

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 183/483 (37%), Positives = 271/483 (56%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALSD L  TV R   I+ Q++ RG  L P++   +  +  
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDHLKATVHRDGKIWEQEYERGKTLYPVKSVGET-DIT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF PD  IF     ++   L    +  AYL+  V    +  +   EK      E F
Sbjct: 60  GTIVTFVPDKSIFTQTVEYNYDTLANRMRELAYLNKGVTITMTDKRNKDEKG-EFIAETF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTI 322
           +   GLK +++   E R  +   + + + EK G     VE A+ +     E    Y N I
Sbjct: 119 FSNEGLKEFIKFLDETREPLIQSVISMEGEKNGIP---VEVAMIYNTGFSENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KKYA+ +    K    +  DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLSGFRRGLTSTLKKYADSSGMLDKLKFEVSGDDFREGLTAIVSVKVAEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +    V  A+ +   +YL ++P +A  +++ VI  ++ R    K RE+ +
Sbjct: 236 GQTKTKLGNREVTSAVSQAVSEMLTNYLEEHPDDAKSVVQKVILAAQARHAAAKAREMVQ 295

Query: 441 KTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +   +    LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV
Sbjct: 296 RKNPMSVGGLPGKLSDCSEQDPTKCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASL 554
             A   K+  N++I ++  ALG    ++        E LRY KV+IM DADVDG+HI +L
Sbjct: 356 EKAMQHKVFENEEIKNIYTALGVTIGTEEDSKALNLEKLRYHKVVIMCDADVDGSHIETL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +LIE  H+++ +PPL+ + +G K  YA +++ + +I+E      KG   I
Sbjct: 416 ILTFFFRYMRELIEGGHVYIATPPLYLVKKGAKRRYAWNDQERDEIVESM----KGGASI 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|315273170|ref|ZP_07869216.1| DNA gyrase subunit B [Listeria marthii FSL S4-120]
 gi|313616206|gb|EFR89285.1| DNA gyrase subunit B [Listeria marthii FSL S4-120]
          Length = 415

 Score =  327 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 136/388 (35%), Positives = 221/388 (56%), Gaps = 13/388 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              Q ++ +Y+   I++LEGLE VR RPGMYIG T ++ LHHL  E++DNA+DE +AG+ 
Sbjct: 7   TNVQESASDYNEDQIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVWEIVDNAIDEALAGFC 66

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             IE++++ +  +TV DNGRGIP   + K   + T+E+I T LHAGGKF    Y++SGGL
Sbjct: 67  TEIEITIEADNSITVRDNGRGIPTGINEKI-GRPTVEVIFTVLHAGGKFGGGGYKVSGGL 125

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS  L V V R+   + Q+F RG  +  +E++ +  + RGT + F PDP+
Sbjct: 126 HGVGASVVNALSTSLEVHVHREGKKYYQRFERGDVVMDMEEQGET-DYRGTIVHFTPDPQ 184

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   FD   L   T+  A+L+  +       ++  +      ++ F++ GG+++Y++
Sbjct: 185 IFTETTEFDFDTLRTRTRELAFLNRGLTISIEDKRDEHK-----VRKNFHYEGGIRSYVE 239

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333
              + + +I       + E+       VE ++ +          + N I T EGGTHESG
Sbjct: 240 HLNKAKDVIHEPPIYLEGERDDIM---VEISMQYNTGFSSNIISFANNIHTYEGGTHESG 296

Query: 334 LRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            + ALTR I  YA   +  +    ++  +D+      I+S+   +P+F GQTKTKL + +
Sbjct: 297 FKTALTRVINDYARRNKLFKDSDDNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSE 356

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLL 419
           A+   +    +  + ++++NP  A K++
Sbjct: 357 ARSITDKLFSEALNKFMMENPDVAKKIV 384


>gi|13517047|dbj|BAB40406.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04475]
          Length = 474

 Score =  327 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 182/483 (37%), Positives = 270/483 (55%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+SVVNALS+ L  TV R+  I+ Q++ RG  L P++   + +   
Sbjct: 1   DKDSYKVSGGLHGVGVSVVNALSNHLKATVHREGKIWEQEYERGKTLYPVKSVGESKE-T 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF PD  IF     F    L    +  AYL+  V    +  +   +K      E F
Sbjct: 60  GTMVTFIPDDSIFSQTTEFSYDTLANRMRELAYLNKGVTITLTDKRNKDDKG-EFISETF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTI 322
           +   GLK +++    NR  +   + + + EK G     VE A+ +     E    Y N I
Sbjct: 119 FSNEGLKEFIRFLDGNREPLIQTVISMEGEKNGIP---VEVAMIYNTGYTENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KKYA+ +    K    +  DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLSGFRRGLTSTLKKYADSSGMLDKLKFEVAGDDFREGLTAIVSVKVAEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +    V  A+ +   +YL ++P +A  +++ VI  ++ R    K RE+ +
Sbjct: 236 GQTKTKLGNREVTSAVSQAVSEMLTNYLEEHPDDAKSVVQKVILAAQARHAAAKAREMVQ 295

Query: 441 KTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +   +    LPGKL+DC+       ELF+VEGDSAGG+AK  R+R+ QA+LPLRGKILNV
Sbjct: 296 RKNPMTGGGLPGKLSDCADQNPENCELFLVEGDSAGGTAKMGRDRNFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASL 554
             A   K+  N++I ++  ALG    ++        E LRY KVIIM DADVDG+HI +L
Sbjct: 356 EKAMQHKVFENEEIKNMYTALGVTIGTEEDSKALNLEKLRYHKVIIMCDADVDGSHIETL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +LIE  H+++ +PPL+ + +G+K  YA +++ + +I+E       G   I
Sbjct: 416 ILTFFFRYMRELIENGHVYIATPPLYLVKKGSKRRYAWNDDERDEIVESMG----GGAGI 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|6939919|dbj|BAA90680.1| DNA gyrase subunit B [Cytophaga fermentans]
          Length = 477

 Score =  327 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 179/483 (37%), Positives = 269/483 (55%), Gaps = 15/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALS  L   V R    + Q+++ G+P   L++     +  
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSTYLKAEVHRNGKAYQQEYAIGVPQGELQELGATDD-T 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT ITF+PD  IF     +  + L    +  A+L+  ++   + ++E+ E+      +EF
Sbjct: 60  GTIITFKPDDSIFNTT-EYKYSILANRLRELAFLNRGIRITLTDERELDEEG-NQRTDEF 117

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTI 322
           +   GL  +++   E R  ++  +    TEK       VE AI +     E   SY N I
Sbjct: 118 HSERGLVEFVEFIDETREKLTENVIHITTEKNDVP---VELAIQYNTSFGENVYSYVNNI 174

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH +G R  LTR +K +A+ +    K    I  DD       ++SV ++EP+F 
Sbjct: 175 NTIEGGTHLTGFRRGLTRTLKTWADKSGLLSKLKFDIAGDDFREGLTAVISVKVQEPQFE 234

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + +    V+ A+     HYL +NP +A  ++  VI  +  R   RK RE+  
Sbjct: 235 GQTKTKLGNSEVSLAVDQAVSTALTHYLEENPKDAKIIVNKVILAATARHAARKAREMVQ 294

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKLADCS       E+F+VEGDSAGG+AKQ RNR  QA+LPLRGKILNV
Sbjct: 295 RKTVMSGGGLPGKLADCSDKDPAICEVFLVEGDSAGGTAKQGRNRRFQAILPLRGKILNV 354

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR-----YEKVIIMTDADVDGAHIASL 554
             A   K+  N++I ++  ALG    ++   + L      Y KV+IMTDADVDG+HI +L
Sbjct: 355 EKALQHKVFENEEIKNIFTALGITIGTEEDSKALNLEKIRYHKVVIMTDADVDGSHITTL 414

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           ++TFF++ M DLI+  +L++ +PPL+   +G    Y  +E+ +Q  + ++    +  + I
Sbjct: 415 IMTFFFRYMRDLIKNGYLYIATPPLYLCRKGKNVEYCWNEQQRQDFVAKYSGGKEDSVHI 474

Query: 615 SRF 617
            R+
Sbjct: 475 QRY 477


>gi|310781129|gb|ADP24040.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 450

 Score =  327 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 178/463 (38%), Positives = 260/463 (56%), Gaps = 17/463 (3%)

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133
           LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+ 
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVA 59

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + L
Sbjct: 60  LTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDL 119

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           E   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  E
Sbjct: 120 EVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGKE 177

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
                  E F + GG+ ++++    N+ ++  E    + +        VE  + + +   
Sbjct: 178 -------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNDSYN 227

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
             I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I+
Sbjct: 228 ENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIV 287

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV ++ P+F GQTKTKL + + +  VEN + D    +L +NP  A  ++E   + +  R 
Sbjct: 288 SVKLKNPQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARARE 347

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSAK  RN   QA+
Sbjct: 348 AARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAKSGRNSRFQAI 407

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           LPLRGKILNV  A  +KI +N++I  ++ ALG      +    
Sbjct: 408 LPLRGKILNVEKARLDKILSNEEIRAMITALGTGVGDDFDISK 450


>gi|310781167|gb|ADP24059.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 444

 Score =  327 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 178/453 (39%), Positives = 259/453 (57%), Gaps = 17/453 (3%)

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133
           LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+ 
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVA 59

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + L
Sbjct: 60  LTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDL 119

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           E   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  E
Sbjct: 120 EVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGKE 177

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
                  E F + GG+ ++++    N+ ++  E    + +        VE  + + +   
Sbjct: 178 -------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNDSYN 227

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
             I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I+
Sbjct: 228 ENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIV 287

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV ++ P+F GQTKTKL + + +  VEN + D    +L +NP  A  ++E   + +  R 
Sbjct: 288 SVKLKNPQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARARE 347

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSAK  RN   QA+
Sbjct: 348 AARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAKSGRNSRFQAI 407

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           LPLRGKILNV  A  +KI +N++I  ++ ALG 
Sbjct: 408 LPLRGKILNVEKARLDKILSNEEIRAMITALGT 440


>gi|6939949|dbj|BAA90684.1| DNA gyrase subunit B [Pedobacter heparinus DSM 2366]
          Length = 479

 Score =  327 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 176/484 (36%), Positives = 268/484 (55%), Gaps = 15/484 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  TY++SGGLHGVG+S VNALS  L   V R+  I+ Q+++ G PL  ++         
Sbjct: 1   DKDTYKVSGGLHGVGVSCVNALSTHLKAEVHREGKIWVQEYNIGKPLYEVKSIGDTDKL- 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT ITF PDP IF     +    L    +  ++L+  +K   + ++E  E       E F
Sbjct: 60  GTIITFTPDPTIFTQTTEYRYDTLASRLRELSFLNKGIKLTLTDERETLENG-EFLSELF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTI 322
           +  GGLK ++Q     R  +  E    +  K G     VE A+ + +   E   SY N I
Sbjct: 119 HSEGGLKEFVQFLDGTRPSLIPEPIYVEGIKNGIP---VELALQYNDSYSENVHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFA 380
            T EGGTH +G R  LTR +K YA+ +   + +      DD       ++SV ++EP+F 
Sbjct: 176 NTHEGGTHIAGFRRGLTRTLKAYADKSGLLKNVKFEITGDDFREGLTAVISVKVQEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVN 439
           GQTKTKL + +    V+ A+ +    YL + P EA  ++  VI   +     R+ +  V 
Sbjct: 236 GQTKTKLGNSEVMGAVDIAVGEALGIYLEEYPKEARMIVNKVILAATARAAARKAREMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK+ +    LPGKLADCS +     EL++VEGDSAGG+AKQ R+R+ QA+LPL+GKILNV
Sbjct: 296 RKSVMGGSGLPGKLADCSDSDPEKCELYLVEGDSAGGTAKQGRDRNFQAILPLKGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASL 554
             A   KI  N +I ++  ALG    ++  ++      LRY K++IMTDAD+DG+HI +L
Sbjct: 356 EKAMEHKIYENDEIKNMFTALGVSIGTEEDDKALNLAKLRYHKIVIMTDADIDGSHITTL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIE 613
           +LTFF++ M  LIE  ++++ +PPL+++ +G +  Y  +++ +   ++  K  GK   + 
Sbjct: 416 ILTFFFRYMKALIEAGYVYIAAPPLYQVKKGKEFEYCWNDKQRDDAVQRLKGAGKEESVH 475

Query: 614 ISRF 617
           I R+
Sbjct: 476 IQRY 479


>gi|126438284|ref|YP_001073975.1| DNA topoisomerase (ATP-hydrolyzing) [Mycobacterium sp. JLS]
 gi|126238084|gb|ABO01485.1| DNA topoisomerase (ATP-hydrolyzing) [Mycobacterium sp. JLS]
          Length = 677

 Score =  327 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 167/681 (24%), Positives = 272/681 (39%), Gaps = 53/681 (7%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY---ANLIEV 99
           +Y A+ I  L+ ++  R+RP + +G      L+    E+IDNA++E +A      + + +
Sbjct: 2   SYTAADITELDDVQHTRLRPAVNLG---LDVLNTALRELIDNAIEE-VADPSHGGSAVTI 57

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD--NSTYEISGGLHGV 157
           +L  +G + V D+GRG+PV++ P    K+ +   L T  AGGKF           GL+G+
Sbjct: 58  TLHDDGSVGVADDGRGLPVDSDP-VNGKNGIVKTLGTARAGGKFSAHTDAASTGAGLNGI 116

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK-------------------EK 198
           G +    +S    VTV R    + Q F RG P     K                     +
Sbjct: 117 GAAAAVFISARTDVTVRRAGKTYLQSFGRGYPGVFEGKDFDPDAPFTRADTQKLRGTGNR 176

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +  GT +    DP +  D        LL    + A +S  V      +    ++    
Sbjct: 177 KPDVHGTTVRILFDPAVVPDSQIDIGEVLL-RAHAAARMSPGVHLSVIDEGWPGDEVAPA 235

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTG----KTEKKGTHRGTVEWAIAWCEENPE 314
             E F  P G  T L          +  +            G       W++      P 
Sbjct: 236 LLEPFTGPWGTDTLLDLMCTAAGTPAPGVRAVVEGRGEYTTGRGPTPFRWSLTAGPAEPA 295

Query: 315 ITS-YCNTILTDEGGTHESGLRVALTRGIKKYAELTQN----KRAISIISDDLMISAVGI 369
             + +CNT+ T  GG+H +     L+  +   A   ++    K      + D        
Sbjct: 296 TVAAFCNTVRTPGGGSHLTAAMKGLSEALADRASRMRDLGLAKGEEGPEAQDFAAVTALA 355

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ--NPIEATKLLEWVIERSE 427
           +     +  +  Q KT + S      +   +      +     N    +   +  +E + 
Sbjct: 356 VDTRAPDVAWDSQAKTAVSSRSLNVAMAPDVARSVTIWAANPANGDAVSLWTKLALESAR 415

Query: 428 ERLRRRKQREVNRKTAIRK------LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
            R      +  +R  +  K         P  L         G ELF+ EGDSA G+ K A
Sbjct: 416 ARRSAEGAKARSRAASKAKGLGTNLSLPPKLLPSRETGRGSGAELFLCEGDSALGTIKAA 475

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541
           R+ + QA  PL+GK  NV      K R   +   + + LGC  R     E  RY++++  
Sbjct: 476 RDATFQAAFPLKGKPPNVYGFALNKARAKDEFDSIERILGCGVRDNCDPELCRYDRILFA 535

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +DAD DG +I S L++ F      L+E   +++  PPLF +  GT+ +Y  DE  +   +
Sbjct: 536 SDADPDGGNINSSLISMFLDFYRPLVEAGMVYVTLPPLFVVKDGTQRIYCQDESERDAAV 595

Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
            + K   K K+E+ R KGLGEM A     T +D  +RT++RV  +   N L  T      
Sbjct: 596 AKMKATSKRKVEVQRNKGLGEMDADDFWNTVLDPQRRTVIRVHPDDSENKLHHT------ 649

Query: 662 LMGTKADERFKFIQERASFID 682
           L G   + R  ++ + AS +D
Sbjct: 650 LFGGPPEGRRTWMADVASRVD 670


>gi|13358816|dbj|BAB33154.1| DNA gyrase B subunit [Chitinophaga pinensis]
          Length = 481

 Score =  327 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 183/485 (37%), Positives = 282/485 (58%), Gaps = 15/485 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D +TY++SGGLHGVG+S VNALS  LHVTV R+  +F Q++SRGIP   + +   V  + 
Sbjct: 1   DKNTYKVSGGLHGVGVSCVNALSTLLHVTVKREGKLFEQEYSRGIPQYAVREIG-VSEET 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F+PD +IF D   ++   L    +  AYL+ +++   + D+E  +       E F
Sbjct: 60  GTTVHFKPDGEIFKDTT-YNREILAGRLRELAYLNRKIRIVLTDDREKDDNGNS-VSETF 117

Query: 264 YFPGGLKTYLQTKLEN--RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
           Y  GG+  ++     N  R+ +  E    +     +    VE A+ + +     I SY N
Sbjct: 118 YSEGGIIEFVSMLDRNGRRNALLPEPIFIEA-LDASSNVAVEVAVIYNDSFSENIFSYVN 176

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPE 378
            I T EGGTH +G R A+TR  K Y +  +   K  + +  DD       I+SV + EP+
Sbjct: 177 NINTIEGGTHVAGFRRAITRVFKSYGDKNKMFEKTKVEVTGDDFREGLSAIVSVKVPEPQ 236

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
           F GQTKTKL + D    V++++    D YL ++P EA  ++  V+  ++ R   RK R++
Sbjct: 237 FEGQTKTKLGNSDVMGVVDSSVAAVLDAYLEEHPREAKTIINKVVLAAQAREAARKARQM 296

Query: 439 NRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
            ++ + +    LPGKLADCS+N     EL++VEGDSAGG+AKQ RNRS QA+LPLRGKIL
Sbjct: 297 VQRKSVLSGSGLPGKLADCSENDPKLCELYLVEGDSAGGTAKQGRNRSFQAILPLRGKIL 356

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIA 552
           NV  A   KI  N++I ++  ALG    ++  ++      LRY K+IIMTDADVDG+HIA
Sbjct: 357 NVEKAMEHKIYENEEIKNIFTALGVTIGTEEDDKALNLAKLRYHKLIIMTDADVDGSHIA 416

Query: 553 SLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612
           +L+LTF ++ M  ++EQ ++++  PPL+ + +  + +YA  EE ++  +++     +  +
Sbjct: 417 TLILTFIFRYMKAMVEQGYVYIAQPPLYLVKKSKEQIYAWTEEDRKAAIQQLANGKEDSV 476

Query: 613 EISRF 617
            I R+
Sbjct: 477 TIQRY 481


>gi|6939649|dbj|BAA90673.1| DNA gyrase subunit B [Elizabethkingia meningoseptica]
          Length = 476

 Score =  326 bits (836), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 182/483 (37%), Positives = 285/483 (59%), Gaps = 16/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALS ++  TV R   ++ QK+ +G  +S +EK     +K+
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSTDMITTVFRDGHVYQQKYQKGRAVSEVEKIGD-SDKK 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+  F+PD  IF +   ++   L    +  AYL+  +    + ++   E     + E F
Sbjct: 60  GTQQFFQPDDTIFTELV-YNYDTLASRLRELAYLNRGITITLTDERTKDENG-NFKVETF 117

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTI 322
           +  GGLK +++    NR  I   +   + E+       VE A+ +     E    Y N I
Sbjct: 118 HSEGGLKEFVEFIDGNRESIMEHVIFMEGERDDIP---VEVAMRYNTSFNENLHSYVNNI 174

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH +G R ALTR +KKYA+      K  + I  DD       ++SV + EP+F 
Sbjct: 175 NTHEGGTHLAGFRRALTRTLKKYADDLGLPAKEKVEITGDDFREGLTAVISVKVMEPQFE 234

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +    V+  + +   ++L +NP EA  +++ V+  ++ R   +K RE+ +
Sbjct: 235 GQTKTKLGNSEVSGAVDKIVGEMLTNFLEENPNEAKTIVQKVVLAAKARQAAKKAREMVQ 294

Query: 441 KTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           + + +    LPGKL+DCS      +ELF+VEGDSAGG+AKQ R+R  QA+LPLRGKILNV
Sbjct: 295 RKSPMGGSGLPGKLSDCSSKDPAESELFLVEGDSAGGTAKQGRDRLFQAILPLRGKILNV 354

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASL 554
             +   K+ +N++I ++  ALG    ++   +      LRY K++IMTDADVDG+HI++L
Sbjct: 355 EKSMLHKVYDNEEIKNIYTALGVSVGTEEDSKALNLTKLRYHKIVIMTDADVDGSHISTL 414

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +LIE  ++++ SPPL+ + +G K VYA +E+ ++++  E  K GKG +EI
Sbjct: 415 ILTFFFRYMKELIENGYVYIASPPLYLVKKGNKKVYAWNEKEREELTMELSKDGKG-VEI 473

Query: 615 SRF 617
            R+
Sbjct: 474 QRY 476


>gi|6939871|dbj|BAA90675.1| DNA gyrase subunit B [Bergeyella zoohelcum]
          Length = 477

 Score =  326 bits (836), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 181/482 (37%), Positives = 277/482 (57%), Gaps = 13/482 (2%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALS ++   V R   I+ QK+ RG  ++ +E   +  +KR
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSTDMTTRVYRDGKIYQQKYQRGKAVTEVEVVGET-DKR 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT   F+PD  IF +   +   +L    +  A+L+  +    + ++E  E     + E F
Sbjct: 60  GTEQFFQPDDTIFNEL-EYKYDKLSTRLRELAFLNKGITITLTDEREKNEDG-SYKSETF 117

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTIL 323
           Y   GL  +++     +  I       ++++       V         +  I SY N I 
Sbjct: 118 YSKEGLNEFVKYIDNAKEPIMENPIHIESKEGDEIPVEVALRY-NNSVHSNIYSYVNNIN 176

Query: 324 TDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T +GGTH SG R ALT   KKYAE   T   + + I  +D +     ++SV + EP+F G
Sbjct: 177 TRDGGTHLSGFRRALTSTFKKYAEEVVTGKDKDVKIEGEDFLEGLTSVVSVKVMEPQFEG 236

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NR 440
           QTKTKL + +    V   + +   ++L +NPIEA  +++ VI  ++ RL  +K RE   R
Sbjct: 237 QTKTKLGNSEVSGAVSRVVSEALKNFLEENPIEAKLIVQKVILAAKARLAAQKARENIQR 296

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           KT +    LPGKLADCS      +E+F+VEGDSAGG+AKQ R+R  QA+LPLRGKILNV 
Sbjct: 297 KTPMGGAGLPGKLADCSSKDPSISEIFLVEGDSAGGTAKQGRDRHFQAILPLRGKILNVE 356

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLL 555
            +   K+  N++I ++  ALG    ++   +      LRY KV+IMTDAD+DG+HI++L+
Sbjct: 357 KSMIHKVYENEEIKNIYTALGVSVGTEEDSKALNLSKLRYHKVVIMTDADIDGSHISTLI 416

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615
           LTFF++ M +LIEQ ++++ SPPL+ + +G K VYA +E+ +++   E    GKG +E+ 
Sbjct: 417 LTFFFRYMKELIEQGYVYIASPPLYLLKKGNKKVYAWNEKEREEKTLEMSTDGKG-VEVQ 475

Query: 616 RF 617
           R+
Sbjct: 476 RY 477


>gi|310780899|gb|ADP23925.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 449

 Score =  326 bits (836), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 178/453 (39%), Positives = 259/453 (57%), Gaps = 17/453 (3%)

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133
           LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+ 
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVA 59

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + L
Sbjct: 60  LTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDL 119

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           E   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  E
Sbjct: 120 EVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGKE 177

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
                  E F + GG+ ++++    N+ ++  E    + +        VE  + + +   
Sbjct: 178 -------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNDSYN 227

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
             I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I+
Sbjct: 228 ENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIV 287

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV ++ P+F GQTKTKL + + +  VEN + D    +L +NP  A  ++E   + +  R 
Sbjct: 288 SVKLKNPQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARARE 347

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSAK  RN   QA+
Sbjct: 348 AARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAKSGRNSRFQAI 407

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           LPLRGKILNV  A  +KI +N++I  ++ ALG 
Sbjct: 408 LPLRGKILNVEKARLDKILSNEEIRAMITALGT 440


>gi|194676107|ref|XP_001254458.2| PREDICTED: DNA topoisomerase II, alpha isozyme [Bos taurus]
 gi|297487046|ref|XP_002696055.1| PREDICTED: topoisomerase (DNA) II alpha 170kDa [Bos taurus]
 gi|296476435|gb|DAA18550.1| topoisomerase (DNA) II alpha 170kDa [Bos taurus]
          Length = 1338

 Score =  326 bits (835), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 119/586 (20%), Positives = 234/586 (39%), Gaps = 40/586 (6%)

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  N  +++ +NG+GIPV  H K        +I   L     +D+   +++GG +G G  
Sbjct: 75  LRENNLISIWNNGKGIPVVEH-KVEKMYVPALIFGQLLTSSNYDDEEKKVTGGRNGYGAK 133

Query: 161 VVNALSDELHVTV--ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           + N  S +  V         +F Q +   +  +   + +    +  T ITF PD   F  
Sbjct: 134 LCNIFSTKFTVETASREYKKMFKQTWMDNMGKAGEMELKPFSGEDYTCITFHPDLSKFKM 193

Query: 219 K--AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
           +       A +++     A  +  VK   + ++   +              G ++Y+   
Sbjct: 194 QSLDKDIVALMVRRAYDIAGSTKDVKVYLNGNRLPVK--------------GFRSYVDLY 239

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRV 336
           L+++   +        E+        E  +   E+  +  S+ N+I T +GG H   +  
Sbjct: 240 LKDKVDETGNPLKVIHEQVNH---RWEVCLTMSEKGFQQISFVNSIATSKGGRHVDYVAD 296

Query: 337 ALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
            +   +       +NK  +++ +  +       ++  I  P F  QTK  +         
Sbjct: 297 QIVTKLVD-VVKKKNKGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQVKSFGS 355

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              L + F    +        +L WV  +++  ++  K+    +   I+ +       D 
Sbjct: 356 TCQLSEKFIKAAIG-CGIVESILNWVKFKAQ--IQLNKKCSAVKHNRIKGIPKLDDANDA 412

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
               +    L + EGDSA   A        R    V PLRGKILNV  A  ++I  N +I
Sbjct: 413 GGRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENAEI 472

Query: 514 MDLVQALGCRTRSQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
            ++++ +G + +  Y +ED    LRY K++IMTD D DG+HI  LL+ F +     L+  
Sbjct: 473 NNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRH 532

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           + L     P+ ++++  + +  +     ++       H   K ++  +KGLG   + + K
Sbjct: 533 RFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPNH--KKWKVKYYKGLGTSTSKEAK 590

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675
           E   D  +   ++ + +           + +K    + D+R +++ 
Sbjct: 591 EYFADMKRHR-IQFKYS-GPEDDAAISLAFSK---KQTDDRKEWLT 631


>gi|6939896|dbj|BAA90678.1| DNA gyrase subunit B [Bacteroides vulgatus]
          Length = 479

 Score =  326 bits (835), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 184/485 (37%), Positives = 279/485 (57%), Gaps = 17/485 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALS  +   V R   I+ Q++S G PL  +++     +  
Sbjct: 1   DKGSYKVSGGLHGVGVSCVNALSTHMTTQVFRGGKIYQQEYSCGHPLYSVKEVG-TADIT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+ TF PD  IF     +    L    +  AYL+  +    +  + I E+ G  +KE F
Sbjct: 60  GTKQTFWPDDTIFTVT-EYKFDILQARMRELAYLNKGITISLTD-RRIKEEDGSFKKEIF 117

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           +   G+K +++    N   + +++    TEK  T    +E AI +       + SY N I
Sbjct: 118 HSDEGVKEFVRFLNRNNEALINDVIYLNTEKNNTP---IECAIMYNTGYRESLHSYVNNI 174

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE+G R ALTR +KKYAE T+   K  + I  +D     + ++SV + EP+F 
Sbjct: 175 NTIEGGTHEAGFRSALTRVLKKYAEDTKALEKAKVEISGEDFREGLIAVISVKVAEPQFE 234

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +    V  A+ +   +YL ++P EA ++++ VI  +  R+  RK RE  +
Sbjct: 235 GQTKTKLGNSEVSGAVNQAVGEALTYYLEEHPKEAKQIVDKVILAATARIAARKARESVQ 294

Query: 441 KTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           + + +    LPGKLADCS       ELF+VEGDSAGGSAKQ R+R+ QA+LPLRGKILNV
Sbjct: 295 RKSPMGGGGLPGKLADCSSRNPEECELFLVEGDSAGGSAKQGRSRAFQAILPLRGKILNV 354

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-------RSQYREEDLRYEKVIIMTDADVDGAHIA 552
             A   K   + ++ +++ ALG R          +   + LRY KV+IMTDADVDG+HI 
Sbjct: 355 EKAMWHKAFESDEVNNIITALGVRFGVDGNDDSKKANIDKLRYHKVVIMTDADVDGSHID 414

Query: 553 SLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612
           +L++T FY+ M ++IE  HL++ +PPL++ ++G  S Y + EE +Q  ++++    +  I
Sbjct: 415 TLIMTLFYRYMPEIIENGHLYIANPPLYKCSKGKISEYCYTEEARQAFIQKYGDGQENGI 474

Query: 613 EISRF 617
              R+
Sbjct: 475 HTQRY 479


>gi|261331231|emb|CBH14221.1| DNA topoisomerase II, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 1221

 Score =  326 bits (835), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 131/672 (19%), Positives = 235/672 (34%), Gaps = 69/672 (10%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTDEK-----------------------ALHHLFSEVI 82
           A   + L  +E V  RP MYIG  D                          L  +  E++
Sbjct: 4   AHKYKKLTPIEHVLTRPEMYIGSLDTTATPMFIYDEQKGHMVWETVKLNHGLLKIVDEIL 63

Query: 83  DNAMDEV--IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140
            NA D +   +     I V++   G +T+ ++G GIP+    +       E++   L   
Sbjct: 64  LNASDNISNRSARMTYIRVTITDTGEITIENDGAGIPI-VRSREHKLYIPEMVFGHLLTS 122

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--K 198
             +D+       G HG G  + N LS    V        F   +   +  +   +     
Sbjct: 123 SNYDDDNQNAVAGRHGYGAKLTNILSLSFSVCCRTNGREFHMSWQDHMRKATAPRVSNVG 182

Query: 199 VRNKRGTRITFRPDPKIFGDKAG----FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
            + K  TR+ F PD + FG K           L K     + +   ++   +        
Sbjct: 183 TKEKNVTRVKFLPDYERFGMKEKKISNDMKRVLYKRIMDLSAMFPNIQITLN-------- 234

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE 314
                   F       T                            G V +  +       
Sbjct: 235 ---GSSFGFKSFKDYATLYSAMTPKGEKPPPPYVYES------KSGCVAFIPSVVPGVRR 285

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFI 374
           +    N ++T  GGTH +  +  LT  +       + +  +    + ++     ++ +  
Sbjct: 286 MFGVVNGVVTYNGGTHCNAAQDILTGCLDGVERELKKENKVMDT-NRVLRHFTILVFLVQ 344

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            +P+F  Q K +LVS      V       +   L    +EA           E       
Sbjct: 345 VQPKFDSQNKARLVSTPTMPRVPRQDVMKYL--LRMPFLEAHVSTITGQLAQELNKEIGT 402

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ---ARNRSNQAVLP 491
            R ++ KT +  +          ++  H   L + EGDSA   A+    +  +    V P
Sbjct: 403 GRRMSSKTLLTSITKLVDATSTRRDPKHTRTLIVTEGDSAKALAQNSLSSDQKRYTGVFP 462

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAH 550
           LRGK+LNV +   +++RN +++ +L  ALG      Y + D LRY++++IMTD D DG+H
Sbjct: 463 LRGKLLNVRNKNLKRLRNCKELQELFCALGLELDKDYTDADELRYQRILIMTDQDADGSH 522

Query: 551 IASLLLTFFYQEMYDLIEQ--KHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKH 607
           I  L++  F      L+ +    + + S P+ +   +    V     +   K     + +
Sbjct: 523 IKGLVINAFESLWPSLLVRNPGFISIFSTPIVKARLRDKSVVSFFSMKEFHKW---QRSN 579

Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667
                    +KGLG    ++ KE   D  K T+  +    D +  K   +  +     + 
Sbjct: 580 ANTPYTCKYYKGLGTSTTAEGKEYFKDMEKHTMRLLV---DRSDHKLLDNVFD---SQEV 633

Query: 668 DERFKFIQE-RA 678
           + R  ++ +  A
Sbjct: 634 EWRKDWMTKANA 645


>gi|135998|sp|P12531|TOP2_TRYBB RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|162305|gb|AAA30256.1| DNA topoisomerase II [Trypanosoma brucei]
          Length = 1221

 Score =  326 bits (835), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 131/672 (19%), Positives = 235/672 (34%), Gaps = 69/672 (10%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTDEK-----------------------ALHHLFSEVI 82
           A   + L  +E V  RP MYIG  D                          L  +  E++
Sbjct: 4   AHKYKKLTPIEHVLTRPEMYIGSLDTTATPMFIYDEQKGHMVWETVKLNHGLLKIVDEIL 63

Query: 83  DNAMDEV--IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140
            NA D +   +     I V++   G +T+ ++G GIP+    +       E++   L   
Sbjct: 64  LNASDNISNRSARMTYIRVTITDTGEITIENDGAGIPI-VRSREHKLYIPEMVFGHLLTS 122

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--K 198
             +D+       G HG G  + N LS    V        F   +   +  +   +     
Sbjct: 123 SNYDDDNQNAVAGRHGYGAKLTNILSLSFSVCCRTNGREFHMSWQDHMRKATAPRVSNVG 182

Query: 199 VRNKRGTRITFRPDPKIFGDKAG----FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
            + K  TR+ F PD + FG K           L K     + +   ++   +        
Sbjct: 183 TKEKNVTRVKFLPDYERFGMKEKKISNDMKRVLYKRIMDLSAMFPNIQITLN-------- 234

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE 314
                   F       T                            G V +  +       
Sbjct: 235 ---GSSFGFKSFKDYATLYSAMTPKGEKPPPPYVYES------KSGCVAFIPSVVPGVRR 285

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFI 374
           +    N ++T  GGTH +  +  LT  +       + +  +    + ++     ++ +  
Sbjct: 286 MFGVVNGVVTYNGGTHCNAAQDILTGCLDGVERELKKENKVMDT-NRVLRHFTILVFLVQ 344

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            +P+F  Q K +LVS      V       +   L    +EA           E       
Sbjct: 345 VQPKFDSQNKARLVSTPTMPRVPRQDVMKYL--LRMPFLEAHVSTITGQLAQELNKEIGT 402

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ---ARNRSNQAVLP 491
            R ++ KT +  +          ++  H   L + EGDSA   A+    +  +    V P
Sbjct: 403 GRRMSSKTLLTSITKLVDATSTRRDPKHTRTLIVTEGDSAKALAQNSLSSDQKRYTGVFP 462

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAH 550
           LRGK+LNV +   +++RN +++ +L  ALG      Y + D LRY++++IMTD D DG+H
Sbjct: 463 LRGKLLNVRNKNLKRLRNCKELQELFCALGLELDKDYTDADELRYQRILIMTDQDADGSH 522

Query: 551 IASLLLTFFYQEMYDLIEQ--KHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKH 607
           I  L++  F      L+ +    + + S P+ +   +    V     +   K     + +
Sbjct: 523 IKGLVINAFESLWPSLLVRNPGFISIFSTPIVKARLRDKSVVSFFSMKEFHKW---QRSN 579

Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667
                    +KGLG    ++ KE   D  K T+  +    D +  K   +  +     + 
Sbjct: 580 ANTPYTCKYYKGLGTSTTAEGKEYFKDMEKHTMRLLV---DRSDHKLLDNVFD---SQEV 633

Query: 668 DERFKFIQE-RA 678
           + R  ++ +  A
Sbjct: 634 EWRKDWMTKANA 645


>gi|71744648|ref|XP_803868.1| DNA topoisomerase II [Trypanosoma brucei TREU927]
 gi|70831119|gb|EAN76624.1| DNA topoisomerase II [Trypanosoma brucei]
          Length = 1221

 Score =  326 bits (835), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 131/672 (19%), Positives = 235/672 (34%), Gaps = 69/672 (10%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTDEK-----------------------ALHHLFSEVI 82
           A   + L  +E V  RP MYIG  D                          L  +  E++
Sbjct: 4   AHKYKKLTPIEHVLTRPEMYIGSLDTTATPMFIYDEQKGHMVWETVKLNHGLLKIVDEIL 63

Query: 83  DNAMDEV--IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140
            NA D +   +     I V++   G +T+ ++G GIP+    +       E++   L   
Sbjct: 64  LNASDNISNRSARMTYIRVTITDTGEITIENDGAGIPI-VRSREHKLYIPEMVFGHLLTS 122

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--K 198
             +D+       G HG G  + N LS    V        F   +   +  +   +     
Sbjct: 123 SNYDDDNQNAVAGRHGYGAKLTNILSLSFSVCCRTNGREFHMSWQDHMRKATAPRVSNVG 182

Query: 199 VRNKRGTRITFRPDPKIFGDKAG----FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
            + K  TR+ F PD + FG K           L K     + +   ++   +        
Sbjct: 183 TKEKNVTRVKFLPDYERFGMKEKKISNDMKRVLYKRIMDLSAMFPNIQITLN-------- 234

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE 314
                   F       T                            G V +  +       
Sbjct: 235 ---GSSFGFKSFKDYATLYSAMTPKGEKPPPPYVYES------KSGCVAFIPSVVPGVRR 285

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFI 374
           +    N ++T  GGTH +  +  LT  +       + +  +    + ++     ++ +  
Sbjct: 286 MFGVVNGVVTYNGGTHCNAAQDILTGCLDGVERELKKENKVMDT-NRVLRHFTILVFLVQ 344

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            +P+F  Q K +LVS      V       +   L    +EA           E       
Sbjct: 345 VQPKFDSQNKARLVSTPTMPRVPRQDVMKYL--LRMPFLEAHVSTITGQLAQELNKEIGT 402

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ---ARNRSNQAVLP 491
            R ++ KT +  +          ++  H   L + EGDSA   A+    +  +    V P
Sbjct: 403 GRRMSSKTLLTSITKLVDATSTRRDPKHTRTLIVTEGDSAKALAQNSLSSDQKRYTGVFP 462

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAH 550
           LRGK+LNV +   +++RN +++ +L  ALG      Y + D LRY++++IMTD D DG+H
Sbjct: 463 LRGKLLNVRNKNLKRLRNCKELQELFCALGLELDKDYTDADELRYQRILIMTDQDADGSH 522

Query: 551 IASLLLTFFYQEMYDLIEQ--KHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKH 607
           I  L++  F      L+ +    + + S P+ +   +    V     +   K     + +
Sbjct: 523 IKGLVINAFESLWPSLLVRNPGFISIFSTPIVKARLRDKSVVSFFSMKEFHKW---QRSN 579

Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667
                    +KGLG    ++ KE   D  K T+  +    D +  K   +  +     + 
Sbjct: 580 ANTPYTCKYYKGLGTSTTAEGKEYFKDMEKHTMRLLV---DRSDHKLLDNVFD---SQEV 633

Query: 668 DERFKFIQE-RA 678
           + R  ++ +  A
Sbjct: 634 EWRKDWMTKANA 645


>gi|225575717|ref|ZP_03784327.1| hypothetical protein RUMHYD_03810 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037075|gb|EEG47321.1| hypothetical protein RUMHYD_03810 [Blautia hydrogenotrophica DSM
           10507]
          Length = 384

 Score =  326 bits (835), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 138/379 (36%), Positives = 212/379 (55%), Gaps = 14/379 (3%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + Y A  I+ILEGLE VR RPGMYIG T  + LHHL  E++DNA+DE +AG+ + I+V++
Sbjct: 13  EEYGADQIQILEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNAVDEALAGFCDEIQVTI 72

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           +    +TV+DNGRGIPV  + K      +E++ T LHAGGKF    Y++SGGLHGVG SV
Sbjct: 73  NSGDSITVIDNGRGIPVGINHKA-GIPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGASV 131

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKA 220
           VNALS+ L VT+  +  ++ Q++ RG  +  L+   +    K GT ++F PD KIF +  
Sbjct: 132 VNALSEWLEVTIYHEGKVYRQRYERGNTVYKLKIVGECEPEKTGTMVSFLPDKKIFEETV 191

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +D   L +  +  A+L+  +K   + ++             F++ GG+K +++    ++
Sbjct: 192 -YDYDILKQRFREMAFLTKGLKIVLTDERTDERISHT-----FHYEGGIKEFVKYLNRSK 245

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + +  E+   + EK G     VE A+   +        + N I T EGGTH  G R ALT
Sbjct: 246 TELYPEVIYCEGEKDGVF---VEVAMQHNDSYTENTYGFVNNITTPEGGTHVVGFRNALT 302

Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           +    YA   +  +    ++  +D+      I+SV I EP+F GQTK KL + +A+  V+
Sbjct: 303 KTFNDYARKNKLLKDSEPNLSGEDIREGLAAIVSVKIEEPQFEGQTKQKLGNSEARGAVD 362

Query: 398 NALRDPFDHYLVQNPIEAT 416
           N +    + +L QNP  A 
Sbjct: 363 NIVSKQLELFLEQNPSVAK 381


>gi|10039317|dbj|BAB13319.1| DNA gyrase B subunit [Flexibacter filiformis]
          Length = 481

 Score =  326 bits (835), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 182/485 (37%), Positives = 283/485 (58%), Gaps = 15/485 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D +TY++SGGLHGVG+S VNALS  LHVTV R+  +F Q++ RGIP   + +  +  +  
Sbjct: 1   DKNTYKVSGGLHGVGVSCVNALSTLLHVTVRREGKLFEQEYQRGIPQYAVREIGEA-DTT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F+PD +IF D   ++   L    +  AYL+ +++   + D+E  E  G    E F
Sbjct: 60  GTTVHFKPDNEIFKDTT-YNREILAGRLRELAYLNRKIRITLTDDREKDE-AGNSISETF 117

Query: 264 YFPGGLKTYLQTKLEN--RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
           Y  GG+  ++Q    +  R+ +  +    +     +    VE A+ + +     I SY N
Sbjct: 118 YSEGGIIEFVQMLDRSGRRNGLLPDPIFIEAH-DASSNVAVEVAVIYNDSFSENIFSYVN 176

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPE 378
            I T EGGTH +G R A+TR  K Y +  +   K  I +  DD       I+SV + EP+
Sbjct: 177 NINTIEGGTHVAGFRRAITRVFKSYGDKNKLFEKTKIEVTGDDFREGLSAIISVKVPEPQ 236

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
           F GQTKTKL + D    V++++    D YL ++P EA  ++  V+  ++ R   RK R++
Sbjct: 237 FEGQTKTKLGNSDVMGVVDSSVAAVLDAYLEEHPREAKIIINKVVLAAQAREAARKARQM 296

Query: 439 NRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
            ++ + +    LPGKLADCS+N     EL++VEGDSAGG+AKQ RNRS QA+LPLRGKIL
Sbjct: 297 VQRKSVLSGSGLPGKLADCSENDPEKCELYLVEGDSAGGTAKQGRNRSFQAILPLRGKIL 356

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIA 552
           NV  A   KI  N++I ++  ALG    ++  ++      LRY K+IIMTDADVDG+HIA
Sbjct: 357 NVEKAMEHKIYENEEIKNIFTALGVTIGTEEDDKALNLSKLRYHKLIIMTDADVDGSHIA 416

Query: 553 SLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612
           +L+LTF ++ M  ++EQ ++++  PPL+ + +  + +YA  E+ ++  +++     +  +
Sbjct: 417 TLILTFIFRYMKAMVEQGYVYIAQPPLYLVKKSKEQIYAWTEDDRKAAIQKLANGKEDSV 476

Query: 613 EISRF 617
            I R+
Sbjct: 477 TIQRY 481


>gi|212712615|ref|ZP_03320743.1| hypothetical protein PROVALCAL_03710 [Providencia alcalifaciens DSM
           30120]
 gi|212684831|gb|EEB44359.1| hypothetical protein PROVALCAL_03710 [Providencia alcalifaciens DSM
           30120]
          Length = 318

 Score =  326 bits (835), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 116/325 (35%), Positives = 185/325 (56%), Gaps = 14/325 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+ YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ + I +
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGFCDDIVI 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVQDDGRGIPTGIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L + + R   +  Q +  G P  PL    +  ++ GTR+ F P    F   
Sbjct: 121 SVVNALSEKLELVIRRDGKVHEQIYKHGEPQGPLTVVGET-DQTGTRVRFWPSMDTFKGV 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++    N
Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLIDKRDGKE-------DHFHYEGGIKAFVEYLSRN 232

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   +F   TEK G     VE ++ W +     +  + N I   +GGTH +G R A+
Sbjct: 233 KTPIHPSVFYFSTEKDGI---GVEVSMQWNDGFQENVYCFTNNIPQRDGGTHLAGFRAAM 289

Query: 339 TRGIKKYAELTQNKRAISIISDDLM 363
           TR +  Y E    ++    +   +M
Sbjct: 290 TRTLNNYMEKEGYQKKRKSVQRVMM 314


>gi|10039323|dbj|BAB13322.1| DNA gyrase B subunit [Flexibacter canadensis]
          Length = 479

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 180/484 (37%), Positives = 268/484 (55%), Gaps = 15/484 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  TY++SGGLHGVG+S VNALS  L   V R+  ++ Q++ RG P   ++   +  N  
Sbjct: 1   DKDTYKVSGGLHGVGVSCVNALSTHLKAEVHREGKVWVQEYERGKPQYDVKTVGET-NIT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF PD +IF     ++   L    +  AYL+  ++   + ++E  +         F
Sbjct: 60  GTIVTFTPDTEIFTLTTIYNYDTLAARLRELAYLNKGIRLTLTDERETNDDGSYVVNSYF 119

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTI 322
              GGLK ++     NR  +  E       K G     VE A+ +     E   SY N I
Sbjct: 120 -SEGGLKEFITYLDGNREPLIPEPIYIDGNKSGIP---VELALQYNSTYSENVHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFA 380
            T EGGTH +G R  LTR +K YAE +   + +   I  DD       ++SV + EP+F 
Sbjct: 176 NTIEGGTHVAGFRRGLTRTLKSYAEKSGLLKNLKVEITGDDFREGLTAVVSVKVAEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVN 439
           GQTKTKL + +    V+ A+ +    YL ++P EA  +++ V +  +     R+ +  V 
Sbjct: 236 GQTKTKLGNNEVIGAVDQAVGEILGVYLEEHPKEARLIVQKVVLAATARAAARKAREMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK+ +    LPGKL+DCS N     EL++VEGDSAGG+AKQ R+R+ QA+LPL+GKILNV
Sbjct: 296 RKSVMSGSGLPGKLSDCSNNDPEACELYLVEGDSAGGTAKQGRDRNFQAILPLKGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASL 554
             A   KI  N++I ++  A+G    +   +     E LRY K+IIMTDADVDG+HI +L
Sbjct: 356 EKAMEHKIYENEEIKNIFTAMGVSIGTPEDDKALNLEKLRYHKIIIMTDADVDGSHITTL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIE 613
           +LTFF++ M  L+EQ ++++ +PPL+ + +G    YA  EE +   +E  K +GK   + 
Sbjct: 416 ILTFFFRYMKALVEQGYIYIATPPLYLVKKGKDFEYAWTEEQRLAAIERVKGNGKEDSVN 475

Query: 614 ISRF 617
           I R+
Sbjct: 476 IQRY 479


>gi|75763520|ref|ZP_00743231.1| Topoisomerase IV subunit B [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74488991|gb|EAO52496.1| Topoisomerase IV subunit B [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 389

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 134/388 (34%), Positives = 211/388 (54%), Gaps = 21/388 (5%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y+  +I++LEGLE VR RPGMYIG TD + LHHL  E++DN++DE +AG+ + I V + 
Sbjct: 7   QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  ++V+D GRG+P   H     K T E+ILT LHAGGKF    Y+ SGGLHGVG SVV
Sbjct: 67  KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124

Query: 163 NALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           NALS+ L VT+ R   I+ Q+F   G+P + LEK  K +   GT + F+PD  IF     
Sbjct: 125 NALSEWLVVTIKRDGNIYEQRFENGGVPATTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 182

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L +  +  A+L   +K     ++   E       + F++  G++ ++    E + 
Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DIFHYETGIEAFVSYLNEEKD 235

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I         E+ G      E A  + +     I S+ N + T +GGTHE+G + A+TR
Sbjct: 236 SIHPV-VYFTGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA       ++  ++   D+      I+SV + E   +F GQTK KL + +A+ ++
Sbjct: 292 VFNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSI 351

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIE 424
           +  + +   ++L +NP  AT L+   ++
Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAVK 379


>gi|218662159|ref|ZP_03518089.1| DNA gyrase subunit B [Rhizobium etli IE4771]
          Length = 356

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 135/365 (36%), Positives = 205/365 (56%), Gaps = 14/365 (3%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEV 89
              +      S  Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE 
Sbjct: 2   SDTSATENGVSTEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEA 61

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
           +AG+A+++ VSL+ +G +TV DNGRGIP + H      S  E+I+T LHAGGKFD ++Y+
Sbjct: 62  LAGHADIVTVSLNPDGSVTVTDNGRGIPTDIHS-GEGVSAAEVIMTQLHAGGKFDQNSYK 120

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  L + + R   I    F+ G+  +PL+   +  ++ GT ++F
Sbjct: 121 VSGGLHGVGVSVVNALSVWLKLKIRRHGKIHEMSFTHGVADAPLKVTGEAPDETGTEVSF 180

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F     FD   L    +  A+L+  V+   +  +    K     +EE  + GGL
Sbjct: 181 MPSSETF-TMTEFDYGTLEHRLRELAFLNSGVRILLTDKRHSDIK-----QEELRYDGGL 234

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328
           + ++      +  +  +    + EK G    TVE A+ W +   E    + N I   +GG
Sbjct: 235 EAFVAYLDRAKKSLVDKPVAIRGEKDGI---TVEVAMWWNDSYHENVLCFTNNIPQRDGG 291

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  YA+ +    K  +++  +D       +LSV + +P+F+ QTK K
Sbjct: 292 THMAGFRAALTRQVVSYADNSGITKKEKVTLQGEDCREGLTAVLSVKVPDPKFSSQTKDK 351

Query: 387 LVSLD 391
           LVS +
Sbjct: 352 LVSSE 356


>gi|194339073|gb|ACF49452.1| GyrB [Amycolatopsis halotolerans]
          Length = 466

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 180/473 (38%), Positives = 267/473 (56%), Gaps = 19/473 (4%)

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133
           LHHL  EV+DN++DE +AGYA  +EV+L  +G + VVD+GRGIPV+ HPK   K TLE++
Sbjct: 1   LHHLVQEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVDIHPK-EQKPTLEVV 59

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           LT LHAGGKFD+ +Y +SGGLHGVG+SVVNALS +L   +      + Q+++  IP  PL
Sbjct: 60  LTILHAGGKFDSDSYAVSGGLHGVGVSVVNALSTKLLAEIKVGGRSWRQEYTDQIP-GPL 118

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           E      +  GT ITF  D  IF     ++   + +  Q  A+L+  +      ++   E
Sbjct: 119 EDLGPATD-TGTTITFWADGDIFET-TTYNFETISRRLQEMAFLNKGLTLSLRDERVPDE 176

Query: 254 KYGIP--------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
           +            +++ + +PGGL+ +++    ++  I   + +   +  G     VE A
Sbjct: 177 ETEEDAAGKPIRVKEKVYCYPGGLEDFVKHINGSKDPIHQSVISFDAKGTG---LEVEVA 233

Query: 306 IAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDL 362
           + W     P + ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  DD+
Sbjct: 234 MQWNNGFTPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDANLTGDDV 293

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
                 I+S+ + EP+F GQTKTKL + +A+  V+    +    +  +NP EA  ++   
Sbjct: 294 REGLAAIVSIKLSEPQFEGQTKTKLGNSEAKTFVQQQSNEWLGDWFERNPSEAKTIINKS 353

Query: 423 IERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
           I  S+ RL  RK R+ V RK A+    LPGKL DC  N     EL+IVEGDSAGGSAK+ 
Sbjct: 354 ISSSQARLAARKARDLVRRKGALEIGGLPGKLKDCRSNDPGECELYIVEGDSAGGSAKEG 413

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
           R+   QA+LP+RGKI+NV  A  +++  N ++  L+ ALG      +    LR
Sbjct: 414 RDSMYQAILPIRGKIINVEKARIDRVLKNTEVQSLITALGTGIHDDFDISKLR 466


>gi|225575718|ref|ZP_03784328.1| hypothetical protein RUMHYD_03811 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037061|gb|EEG47307.1| hypothetical protein RUMHYD_03811 [Blautia hydrogenotrophica DSM
           10507]
          Length = 269

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 119/247 (48%), Positives = 162/247 (65%), Gaps = 4/247 (1%)

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK+A+  + LPGKLADCS       E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILN
Sbjct: 26  RRKSALDGMSLPGKLADCSDKNPENCEIYIVEGDSAGGSAKTARSRATQAILPLRGKILN 85

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  +KI  N++I  ++ A G      +    LRY K+IIMTDADVDGAHIA+LLLTF
Sbjct: 86  VEKARLDKIYANKEIKAMITAFGTGIHEDFDITKLRYHKIIIMTDADVDGAHIATLLLTF 145

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
            Y+ M +LI+Q +++L  PPL+++ +  K  YA+ ++   +IL E  + G  K  I R+K
Sbjct: 146 LYRFMPELIKQGYVYLAQPPLYKVEKNKKVWYAYSDDELNRILTEIGRDGNNK--IQRYK 203

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           GLGEM A QL ET MD  KR LLRV +++   S  +   +   LMG K + R +FI+E A
Sbjct: 204 GLGEMDADQLWETTMDPEKRILLRVTMDE--ESSAEIDLTFTTLMGDKVEPRREFIEENA 261

Query: 679 SFIDDVG 685
            F+ ++ 
Sbjct: 262 RFVKNLD 268


>gi|163955216|ref|YP_001648320.1| hypothetical protein OsV5_244r [Ostreococcus virus OsV5]
 gi|163638665|gb|ABY28024.1| hypothetical protein OsV5_244r [Ostreococcus virus OsV5]
          Length = 1072

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 132/662 (19%), Positives = 238/662 (35%), Gaps = 72/662 (10%)

Query: 47  SSIRILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVID 83
            S++ L  +E V  RP  Y+G  +                         AL  +F E++ 
Sbjct: 3   ESVQKLTHIEHVLKRPDSYVGPVEIGCEPYWIFQKTDNQFKKKSLNYSPALLKIFDEILV 62

Query: 84  NAMD-EVI-AGYANLIEVSLDGN-GFLTVVDNGR--GIPVENHPKFPNKSTLEIILTTLH 138
           NA+D   +      LI   +D   G +T+ +NG   G+ V  H K       E+    L 
Sbjct: 63  NAIDRNSLHPKSCTLISAGIDKETGAVTIENNGPLGGVGVRMHEK-EGIWNPELTFGHLL 121

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
               +D++   I GG +G G  + N  S E  + +    T           ++     + 
Sbjct: 122 TSTNYDDNKKRIVGGRNGYGAKLTNIYSSEFSIVIKDGETKQCYTQKWNNNMTVCHPPKI 181

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
            ++   T                F      K        +   K      +         
Sbjct: 182 TKHSASTSSVSIT----------FIPDW--KRFGMNKMDNNIYKIFE--KRVWDANICTT 227

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSY 318
              +  F G        +   +      +  G +E            I   E   E  S+
Sbjct: 228 PNCKVKFQGEALPKTSFEAYAK------MHEGVSEVSSVTTDRWSVCIGPSENGLEQVSF 281

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPE 378
            N I T +GGTH   +   +  GI          + I +    +  +    +   +  P 
Sbjct: 282 VNGICTTKGGTHVDHVASYIASGIIDEMA-----KKIKLKPQQVKNTFNIFVKATLENPT 336

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
           F+ Q K++  S       +      F    ++  I+         +  +E  +    R+ 
Sbjct: 337 FSSQVKSECTSKAQDFGSKFEPPKNFVKNALKTGIQEELTALSKFKEMKELKKTDGARKS 396

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGK 495
                I  +             +    L + EGDSA   A    +   R +  V PLRGK
Sbjct: 397 K----ITGIPKLDDANKAGTAQSGKCTLIVTEGDSAKTLAVAGLSVVGRDHYGVFPLRGK 452

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASL 554
             NV  A   ++ +NQ+  DL + LG +   +Y++  +LRY +++IMTDAD DG+HI  L
Sbjct: 453 CKNVRDASVAQLTSNQEFNDLKKILGLQQGKEYQDVSELRYGRLMIMTDADNDGSHIKGL 512

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +L   +     L++   +  +  P+ + ++GT+S   + +   +        +G+   +I
Sbjct: 513 ILNMIHYFWPSLLKLGFVVSMVTPIIKASKGTQSKSFYTDSAFRSWY----GNGQPGWKI 568

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
             +KGLG   +++ +E      K   L V+ + D+ + K    + +K    KAD+R  ++
Sbjct: 569 KYYKGLGTSTSAEAREYF---KKIQDLTVKFDMDIMTDKSIVLAFDK---KKADDRKTWL 622

Query: 675 QE 676
            E
Sbjct: 623 LE 624


>gi|9971353|dbj|BAB12483.1| DNA gyrase B subunit [Flavobacterium aquatile]
          Length = 474

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 172/483 (35%), Positives = 264/483 (54%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALSD L  TV R   ++ Q++ +G  + P+++  +    R
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDNLKATVFRDGKVYEQEYEKGKAMYPVKQVGETTK-R 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF PD  IF     +    L    +  ++L+  +    +  +   +     E E F
Sbjct: 60  GTMVTFHPDKTIFTQTIEYSYDTLAARMRELSFLNKGITITLTDKRHTKDNGD-FEGEVF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           +   GLK +++     R  I S + + + EK       VE A+ +       I SY N I
Sbjct: 119 HSKEGLKEFVRFLDAGREPIISHVISMEHEK---GEVPVEVALVYNTSYSENIFSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH  G R+ LTR +KKYA+ +    K    I  DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLQGFRMGLTRTLKKYADASGLLDKLKFEISGDDFREGLTAIISVKVSEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +    V  A+ +  ++YL +NP +A  +++ VI  ++ R   +K RE+ +
Sbjct: 236 GQTKTKLGNREVVSPVSQAVSEMLENYLEENPNDAKIIVQKVILAAQARHAAKKAREMVQ 295

Query: 441 KTAIRKLRLPGKLA-DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +           DCS+      E+++VEGDSAGG+AKQ R+R+ QA++PLRGKILNV
Sbjct: 296 RKTVLGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGGTAKQGRDRNFQAIMPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASL 554
             A   K+  N++I ++  ALG    ++        + LRY KVIIM DADVDG+HIA+L
Sbjct: 356 EKAMHHKVFENEEIRNIFTALGVTIGTEEDSKALNLDKLRYHKVIIMCDADVDGSHIATL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +LIE  H+++ +PPL+ + +G K  YA  ++ +    E       G   I
Sbjct: 416 ILTFFFRFMRELIEGGHVYIAAPPLYLVKKGNKKEYAWTDDQRDLANERMG----GSAAI 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|297272911|ref|XP_002808175.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 2-alpha-like
           [Macaca mulatta]
          Length = 1481

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 129/681 (18%), Positives = 252/681 (37%), Gaps = 86/681 (12%)

Query: 29  IPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD------------------ 70
             +  A    S    Y          LE + +RP  YIG  +                  
Sbjct: 7   KKNEDAKKRLSIERIYQKK-----TQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYR 61

Query: 71  ----EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKF 124
                  L+ +F E++ NA D        + I V++D  N  +++ +NG+GIPV  H K 
Sbjct: 62  EVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEH-KV 120

Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184
                  +I   L     +D+   +++   H   +S        +               
Sbjct: 121 EKMYVPALIFGQLLTSSNYDDDEKKVTXIFH---LSYSLLPXTWMDNMGRAGEM------ 171

Query: 185 SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLLKMTQSKAYLSGRVK 242
                     + +    +  T ITF+PD   F  +       A +++     A  +  VK
Sbjct: 172 ----------ELKPFSGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKDVK 221

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
              + +K   +              G ++Y+   L+++   +        E+        
Sbjct: 222 VFLNGNKLPVK--------------GFRSYVDMYLKDKLDETGNPLKVIHEQVNH---RW 264

Query: 303 EWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDL 362
           E  +   E+  +  S+ N+I T +GG H   +   +   +       +NK  +++ +  +
Sbjct: 265 EVCLTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLVD-VVKKKNKGGVAVKAHQV 323

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
                  ++  I  P F  QTK  +            L + F    +        +L WV
Sbjct: 324 KNHMWIFVNALIENPTFDSQTKENMTLQPKSFGSTCQLSEKFIKAAIG-CGIVESILNWV 382

Query: 423 IERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA- 481
             +++  ++  K+    +   I+ +       D     +    L + EGDSA   A    
Sbjct: 383 KFKAQ--VQLNKKCSAVKHNRIKGIPKLDDANDAGGRNSTDCTLILTEGDSAKTLAVSGL 440

Query: 482 --RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED----LRY 535
               R    V PLRGK+LNV  A  ++I  N +I ++++ +G + +  Y +ED    LRY
Sbjct: 441 GVVGRDKYGVFPLRGKMLNVREASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRY 500

Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEE 595
            K++IMTD D DG+HI  LL+ F +     L+  + L     P+ ++++  + +  +   
Sbjct: 501 GKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQEMAFYSLP 560

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             ++       + K K++  +  GLG   + + KE   D  +   ++ + +         
Sbjct: 561 EFEEWKSSTPNYKKWKVKYYK--GLGTSTSKEAKEYFADMKRHR-IQFKYS-GPEDDAAI 616

Query: 656 QDSINKLMGTKADERFKFIQE 676
             + +K    + D+R +++  
Sbjct: 617 SLAFSK---KQIDDRKEWLTN 634


>gi|19909737|dbj|BAB87064.1| DNA gyrase subunit B [bacterium SD212]
          Length = 479

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 175/489 (35%), Positives = 267/489 (54%), Gaps = 26/489 (5%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DNA+DE +AG+A+L++V L+ +G +TV DNGRGIP + H +   
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHADLVQVILNADGSVTVTDNGRGIPTDIHAE-EG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALSD L + + R       +F R
Sbjct: 60  VSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLELKIYRDGKQHQMRFER 119

Query: 187 GIPLSPLEKKEKVRNKR----------GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAY 236
           G  +  LE       +           GT +TF P    F     FD   L    +  A+
Sbjct: 120 GDTVKSLEVTGTAPIRTTGDKAGQPQSGTEVTFFPSITTF-SHIDFDFKTLEHRLRELAF 178

Query: 237 LSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG 296
           L+  V    +  +     +  P     ++ GG++ +++   +++  +  ++   + +K+G
Sbjct: 179 LNSGVVIRLADMR-----HAEPIDVTLHYEGGVEAFVRHLDKSKQPLLKDVIVIRGKKEG 233

Query: 297 THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKR 353
                ++ A+ W +     +  + N I   +GGTH S  R +LTR +  Y E +    K 
Sbjct: 234 I---ELDLALWWNDSYHETMLCFTNNIPQRDGGTHLSAFRASLTRVMGGYIESSGLAKKE 290

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
            ++   +D       +LSV + +P+F+ QTK KLVS + +  VE    +    +  ++P+
Sbjct: 291 KVAPTGEDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEALCSEGLSTWFEEHPV 350

Query: 414 EATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
           EA  ++  +I   S     R+ +    RK+A+    LPGKLADC +     +ELFIVEGD
Sbjct: 351 EAKMIVAKIIEAASAREAARKARDLTRRKSALEISSLPGKLADCQERDPAKSELFIVEGD 410

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-E 531
           SAGGSAKQARNR NQAVLPLRGKILNV  A  +++ ++  I  L+ ALG          +
Sbjct: 411 SAGGSAKQARNRENQAVLPLRGKILNVERARFDRMLSSDLIGTLILALGTGIGRDDFNAD 470

Query: 532 DLRYEKVII 540
            LRY K+I+
Sbjct: 471 KLRYHKIIL 479


>gi|290343684|ref|YP_003495051.1| DNA topoisomerase II [Ostreococcus tauri virus 1]
 gi|260161099|emb|CAY39800.1| DNA topoisomerase II [Ostreococcus tauri virus 1]
          Length = 1072

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 132/662 (19%), Positives = 237/662 (35%), Gaps = 72/662 (10%)

Query: 47  SSIRILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLFSEVID 83
            S++ L  +E V  RP  Y+G  +                         AL  +F E++ 
Sbjct: 3   ESVQKLTHIEHVLKRPDSYVGPVEIGCEPYWIFQKTDNQFKKKSLNYSPALLKIFDEILV 62

Query: 84  NAMD-EVI-AGYANLIEVSLDGN-GFLTVVDNGR--GIPVENHPKFPNKSTLEIILTTLH 138
           NA+D   +      LI   +D   G +T+ +NG   G+ V  H K       E+    L 
Sbjct: 63  NAIDRNSLHPKSCTLISAGIDKETGAVTIENNGPLGGVGVRMHEK-EGIWNPELTFGHLL 121

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
               +D++   I GG +G G  + N  S E  + +    T           ++     + 
Sbjct: 122 TSTNYDDNKKRIVGGRNGYGAKLTNIYSSEFSIVIKDGETKQCYTQKWNNNMTVCHPPKI 181

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
            ++   T                F      K        +   K      +         
Sbjct: 182 TKHSASTSSVSIT----------FIPDW--KRFGMNKMDNNIYKIFE--KRVWDANICTT 227

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSY 318
              +  F G        +   +      +  G +E            I   E   E  S+
Sbjct: 228 PNCKVKFQGEALPKTSFEAYAK------MHEGVSEVSSVTTDRWSVCIGPSENGLEQVSF 281

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPE 378
            N I T +GGTH   +   +  GI          + I +    +  +    +   +  P 
Sbjct: 282 VNGICTTKGGTHVDHVASYIASGIIDEMA-----KKIKLKPQQVKNTFNIFVKATLENPT 336

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
           F+ Q K++  S       +      F    ++  I+         +  +E  +    R+ 
Sbjct: 337 FSSQVKSECTSKAQDFGSKFEPPKNFVKNALKTGIQEELTALSKFKEMKELKKTDGARKS 396

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGK 495
                I  +             +    L + EGDSA   A    +   R +  V PLRGK
Sbjct: 397 K----ITGIPKLDDANKAGTAQSGKCTLIVTEGDSAKTLAVAGLSVVGRDHYGVFPLRGK 452

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASL 554
             NV  A   ++ +NQ+  DL + LG +    Y++  +LRY +++IMTDAD DG+HI  L
Sbjct: 453 CKNVRDASVAQLTSNQEFNDLKKILGLQQGKDYQDVSELRYGRLMIMTDADNDGSHIKGL 512

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +L   +     L++   +  +  P+ + ++GT+S   + +   +        +G+   +I
Sbjct: 513 ILNMIHYFWPSLLKLGFVVSMVTPIIKASKGTQSKSFYTDSAFRSWY----GNGQPGWKI 568

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
             +KGLG   +++ +E      K   L V+ + D+ + K    + +K    KAD+R  ++
Sbjct: 569 KYYKGLGTSTSAEAREYF---KKIQDLTVKFDMDIMTDKSIVLAFDK---KKADDRKTWL 622

Query: 675 QE 676
            E
Sbjct: 623 LE 624


>gi|146318412|ref|YP_001198124.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Streptococcus suis 05ZYH33]
 gi|145689218|gb|ABP89724.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Streptococcus suis 05ZYH33]
          Length = 387

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 138/387 (35%), Positives = 213/387 (55%), Gaps = 20/387 (5%)

Query: 306 IAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDL 362
           + + +   +   S+ N + T +GGTHE+GL++A+T+ +  YA  T    ++  ++   D 
Sbjct: 1   MQYNDGYSDNILSFVNNVRTKDGGTHETGLKLAITKAMNDYARKTNLLKEKDKNLEGSDY 60

Query: 363 MISAVGILSVFIR--EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
                 +LS+ +     +F GQTK KL S  A+  V+  + D    +L++N   A+ L+ 
Sbjct: 61  REGLSAVLSILVPEEHLQFEGQTKDKLGSPLARPVVDGIVSDKLTFFLLENGELASNLVR 120

Query: 421 WVIERSEERLRRRKQREVNRKTAIRKLRL---PGKLADCSQNIAHGTELFIVEGDSAGGS 477
             I+  + R   RK R+ +R     K       GKL           EL++VEGDSAGGS
Sbjct: 121 KAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGS 180

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AKQ R+R  QA+LPLRGK++N A A    I  N++I  ++  +G    S +  ED+ Y+K
Sbjct: 181 AKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGSDFTIEDVNYDK 240

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT----KSVYAHD 593
           +IIMTDAD DGAHI +LLLTFFY+ M  L+E   +++  PPL+++++G     K  YA  
Sbjct: 241 IIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGRVYIALPPLYKMSKGKGKAEKIAYAWS 300

Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
           +   + + ++F K       + R+KGLGEM A QL ET M+   RTL+RV I      L 
Sbjct: 301 DGELEDLRKDFGK----GFILQRYKGLGEMNADQLWETTMNPETRTLIRVTIED----LA 352

Query: 654 DTQDSINKLMGTKADERFKFIQERASF 680
             +  ++ LMG K + R K+I++   F
Sbjct: 353 RAERRVSVLMGDKVEPRRKWIEDNVKF 379


>gi|13517005|dbj|BAB40385.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04445]
          Length = 474

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 181/483 (37%), Positives = 271/483 (56%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALSD L  TV R+  I+ Q++ RG  L P++   +  +  
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDHLKATVHREGKIWEQEYERGKTLFPVKSIGET-DIT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF PD  IF     ++   L    +  AYL+  V    +  +   +K      E F
Sbjct: 60  GTIVTFVPDKSIFTQTVEYNYDTLANRMRELAYLNKGVTITLTDKRNKDDKG-EFVAETF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTI 322
           +   GLK +++   E R  +   + + + EK G     VE A+ +     E    Y N I
Sbjct: 119 FSNEGLKEFIKFLDETREPLIQSVISMEGEKNGIP---VEVAMIYNTGFSENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KKYA+ +    K    +  DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLSGFRRGLTSTLKKYADSSGMLDKLKFEVSGDDFREGLTAIVSVKVAEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +    V  A+ +   +YL ++P +A  +++ VI  ++ R    K RE+ +
Sbjct: 236 GQTKTKLGNREVTSAVSQAVSEMLTNYLEEHPDDAKSVVQKVILAAQARHAAAKAREMVQ 295

Query: 441 KTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +   +    LPGKL+DCS+      E+F+VEGDSAG +AKQ R+R+ QA+LPLRGKILNV
Sbjct: 296 RKNPMSVGGLPGKLSDCSEQDPTKCEVFLVEGDSAGVTAKQGRDRNFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASL 554
             A   K+  N++I ++  ALG    ++        E LRY KV+IM DADVDG+HI +L
Sbjct: 356 EKAMQHKVFENEEIKNIYTALGVTIGTEEDSKALNLEKLRYHKVVIMCDADVDGSHIETL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +LIE  H+++ +PPL+ + +G K  YA +++ + +I+E      KG   I
Sbjct: 416 ILTFFFRYMRELIEGGHVYIATPPLYLVKKGAKRRYAWNDQERDEIIESM----KGGASI 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|294809109|ref|ZP_06767827.1| DNA gyrase, B subunit, C-terminal domain protein [Bacteroides
           xylanisolvens SD CC 1b]
 gi|294443663|gb|EFG12412.1| DNA gyrase, B subunit, C-terminal domain protein [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 339

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 131/341 (38%), Positives = 195/341 (57%), Gaps = 11/341 (3%)

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K  + I  DD       ++SV + EP+F GQTKTKL + +    V+ A+ +   +YL ++
Sbjct: 4   KVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVMGAVDQAVGEVLAYYLEEH 63

Query: 412 PIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVE 470
           P EA  +++ VI  +  R   RK RE+ ++ + +    LPGKLADCS       ELF+VE
Sbjct: 64  PKEAKTIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGKLADCSDKDPSKCELFLVE 123

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY-- 528
           GDSAGG+AKQ RNR  QA+LPLRGKILNV  A   K   + +I ++  ALG    +    
Sbjct: 124 GDSAGGTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESDEIRNIYTALGVTIGTDEDS 183

Query: 529 ---REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG 585
                + LRY K+IIMTDADVDG+HI +L++TFF++ M  +I+  +L++ +PPL+   +G
Sbjct: 184 KEANIQKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQVIQNGYLYIATPPLYLCKKG 243

Query: 586 TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645
               Y   +  +QK ++ +    +  I   R+KGLGEM A QL ET MD   R L +V I
Sbjct: 244 KVEEYCWTDAQRQKFIDTYGGGSENAIHTQRYKGLGEMNAQQLWETTMDPENRMLKQVNI 303

Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           +    +  +     + LMG     R +FI+E A++  ++  
Sbjct: 304 D----NAAEADYIFSMLMGEDVGPRREFIEENATYA-NIDA 339


>gi|13517049|dbj|BAB40407.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04476]
          Length = 474

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 181/483 (37%), Positives = 273/483 (56%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALSD L  TV R+  I+ Q++ RG  + P++   +  +  
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDHLKATVHREGKIWEQEYERGKTMYPVKSIGET-DIT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF PD  IF     ++   L    +  AYL+  V    +  +   +K      E F
Sbjct: 60  GTIVTFVPDKSIFTLTTEYNYDTLANRMRELAYLNKGVTITLTDKRNKDDKG-EFVSETF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTI 322
           +   GLK +++   E R  +   + + + EK GT    VE A+ +     E    Y N I
Sbjct: 119 FSNEGLKEFIKFLDETREPLIQSVISMEGEKNGTP---VEVAMIYNTGFSENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KKYA+ +    K    +  DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLSGFRRGLTSTLKKYADSSGMLDKLKFEVSGDDFREGLTAIVSVKVAEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +    V  A+ +   +YL ++P +A  +++ VI  ++ R    K RE+ +
Sbjct: 236 GQTKTKLGNREVTSAVSQAVSEMLTNYLEEHPDDAKSVVQKVILAAQARHAAAKAREMVQ 295

Query: 441 KTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +   +    LPGKL+DC +      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV
Sbjct: 296 RKNPMSVGGLPGKLSDCFEQDPTKCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASL 554
             A   K+  N++I ++  ALG    ++        E LRY KV+IM DADVDG+HI +L
Sbjct: 356 EKAMQHKVFENEEIKNIYTALGVTIGTEEDSKALNLEKLRYHKVVIMCDADVDGSHIETL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +LIE  H+++ +PPL+ + +G+K  YA +++ + +I+E      KG   I
Sbjct: 416 ILTFFFRYMRELIEGGHVYIATPPLYLVKKGSKRRYAWNDQERDEIVESM----KGGASI 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|149191296|ref|ZP_01869551.1| DNA topoisomerase IV subunit B [Vibrio shilonii AK1]
 gi|148834894|gb|EDL51876.1| DNA topoisomerase IV subunit B [Vibrio shilonii AK1]
          Length = 401

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 151/400 (37%), Positives = 217/400 (54%), Gaps = 10/400 (2%)

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKK 344
            E          T   T               SY N I T +GGTH +GLR  L   +++
Sbjct: 9   PEQPFTGEFSAETEAATWAVIWQPEGAEMITESYVNLIPTAQGGTHVNGLRQGLLDAMRE 68

Query: 345 YAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDP 403
           + E      R + +  DD+      +LS+ +++P+FAGQTK +L S      V   ++D 
Sbjct: 69  FCEFRNLLPRGVKLTGDDVFERCSYVLSIKMQDPQFAGQTKERLSSRQCAAFVSGVVKDA 128

Query: 404 FDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHG 463
           F  +L + P  A +L E  I  +  R+R    ++V RK       LPGKL DCSQ   + 
Sbjct: 129 FSLWLNEKPQLAEQLAEVCIANAHRRMR--ASKKVVRKKVASGPALPGKLTDCSQQDLNR 186

Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523
           TE+F VEGDSAGGSAKQAR+R  QAV+PLRGKILN     ++++  +Q++ D+  ALG  
Sbjct: 187 TEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVALGID 246

Query: 524 TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT 583
             ++   + LRY KV I+ DAD DG HIA+LL   F +    L+   H+++  PPL+RI 
Sbjct: 247 PDTENL-DGLRYGKVCILADADSDGLHIATLLCALFTKHFRSLVAAGHVYVAMPPLYRID 305

Query: 584 QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRV 643
            G +  YA D++ K  ILE   K  K KI + RFKGLGEM   QL+ET MD N R L+++
Sbjct: 306 CGKEVFYALDDDEKDGILERLSKK-KAKINVQRFKGLGEMNPLQLRETTMDPNTRRLVQL 364

Query: 644 EINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
            I+ D    + T + ++ L+G K AD+R  ++Q      +
Sbjct: 365 TIDDD----EATDEMMDMLLGKKRADDRRSWLQNNGDMAE 400


>gi|145640543|ref|ZP_01796127.1| DNA gyrase subunit B [Haemophilus influenzae R3021]
 gi|145275129|gb|EDK14991.1| DNA gyrase subunit B [Haemophilus influenzae 22.4-21]
          Length = 355

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 132/365 (36%), Positives = 202/365 (55%), Gaps = 19/365 (5%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           +++ +DNY ASSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   SETTNDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCS 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V D+GRGIPV+ HP+    S  E+I+T LHAGGKFD+++Y++SGGLH
Sbjct: 62  DIIVTIHDDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD+L +T+ RQ  +  Q +  G P SPL    +     GT + F P   I
Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGET-EATGTTVRFWPSSDI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     FD   L K  +  ++L+  V       ++ +E       + F++ GG++ +++ 
Sbjct: 180 FA-ITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE-------DYFHYEGGIQAFVEY 231

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGL 334
             +N++ I  + F    EK G     VE A+ W +  N  +  + N I   +GGTH +G 
Sbjct: 232 LNKNKNPIHPKPFYFTAEKDGI---GVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGF 288

Query: 335 RVALTRGIKKYAELTQNKRAISIISDDLMISAVGI----LSVFIREPEFAGQTKTKLVSL 390
           R ALTR +  Y E     +        +M   V      L   I+      +T + L  L
Sbjct: 289 RGALTRSLNSYMENEGMLKKEKWRLQAMMRVKVWWRLFPLKCLIQNSHRKRKTNSCLQKL 348

Query: 391 DAQRT 395
             +  
Sbjct: 349 KVRWN 353


>gi|13517045|dbj|BAB40405.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04474]
          Length = 474

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 180/483 (37%), Positives = 264/483 (54%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALS+ L  TV R+  I+ Q++ RG  + P++      +  
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSEHLKATVHREGKIWEQEYERGKTMYPVKSVG-ASDMT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF PD  IF     +    L    +  AYL+  V    +  +   EK      E F
Sbjct: 60  GTVVTFHPDKTIFTQTTEYSYDTLANRMRELAYLNKGVTISLTDKRNKDEKG-EFVGETF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTI 322
           +   GLK ++    E R  +   + + + EK G     VE A+ +     E    Y N I
Sbjct: 119 FSEQGLKEFITFLDETRVPLIQNVISMEGEKNGIP---VEVAMIYNTGFSENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLSGFRRGLTSTLKKYADSSGLLDKLKFEISGDDFREGLTAIVSVKVAEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +    V  A+ +   +YL ++P +A +++E V   ++ R    K RE+ +
Sbjct: 236 GQTKTKLGNREVTSAVSQAVSEMLTNYLEEHPEDAKQIVEKVKLAAQARHAAAKAREMVQ 295

Query: 441 KTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +   +    LPGKL+DC+       ELF+VEGDSAGG+AK   +R+ QA+LPLRGKILNV
Sbjct: 296 RQNPMGGGGLPGKLSDCADQTPENCELFLVEGDSAGGTAKMGDDRNFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASL 554
             A   K+  N++I ++  ALG    ++        E LRY KV+IM DADVDG+HI +L
Sbjct: 356 EKAMQHKVFENEEIKNIYTALGVTIGTEEDSKALNLEKLRYHKVVIMCDADVDGSHIETL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +LIE  H+++ +PPL+ + +G+K  YA D+  +  I+E       G   I
Sbjct: 416 ILTFFFRYMRELIEGGHVYIATPPLYLVKKGSKKRYAWDDGERDAIIEGM----NGGASI 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|19909735|dbj|BAB87063.1| DNA gyrase subunit B [bacterium PC2]
          Length = 476

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 177/486 (36%), Positives = 271/486 (55%), Gaps = 23/486 (4%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DNA+DE +AG+A+L++V L+ +G +TV DNGRGIP + H +   
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHADLVQVILNADGSVTVTDNGRGIPTDIHAE-EG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALSD L + + R       +F R
Sbjct: 60  VSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLQLKIYRDGKQHEMRFER 119

Query: 187 GIPLSPLEKKE-------KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
           G  +  LE            +   GT +TF P    F     FD   L    +  A+L+ 
Sbjct: 120 GDTVKSLEVTGVAPIREDTGKPLSGTEVTFYPSVTTF-SHIDFDLKTLEHRLRELAFLNS 178

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            V    +  +     +  P +   ++ GG++ +++   ++++ I  ++   + +K+G   
Sbjct: 179 GVVIKLADQR-----HAEPIEMILHYEGGVEAFVRHLDKSKTPILKDVIVIRGKKEGI-- 231

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAIS 356
             ++ A+ W +     +  + N I   +GGTH S  R +LTR +  Y E +    K  +S
Sbjct: 232 -ELDLALWWNDSYHETMLCFTNNIPQRDGGTHLSAFRASLTRIMGGYIESSGAGKKEKVS 290

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           +  +D       +LSV + +P+F+ QTK KLVS + +  VE    +    +  ++P+EA 
Sbjct: 291 VTGEDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEALCSEGLSTWFEEHPVEAK 350

Query: 417 KLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
           +++  +I   S     R+ +    RK+A+    LPGKLADC +     +ELFIVEGDSAG
Sbjct: 351 QVVAKIIEAASAREAARKARDLTRRKSALEISSLPGKLADCQERDPAKSELFIVEGDSAG 410

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLR 534
           GSAKQARNR NQAVLPLRGKILNV  A  +++ ++  I  L+ ALG          + LR
Sbjct: 411 GSAKQARNRENQAVLPLRGKILNVERARFDRMLSSDLIGTLILALGTGIGRDDFNADKLR 470

Query: 535 YEKVII 540
           Y K+I+
Sbjct: 471 YHKIIL 476


>gi|28866790|dbj|BAC65173.1| DNA gyrase B subunit [Cellulophaga fucicola]
          Length = 470

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 183/471 (38%), Positives = 265/471 (56%), Gaps = 14/471 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVG+S VNALS +L  TV R  TI+ Q++ +G  L P++   +    RG
Sbjct: 1   DKIYRVSGGLHGVGVSCVNALSKDLKATVFRNGTIYEQEYQKGKALYPVKSIGET-EIRG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF PD  IF     F+   L    +  +YL+  V    +  + E  E       E F
Sbjct: 60  TEVTFYPDDTIFTQTTEFNYETLANRMRELSYLNKGVAITLTDKRQEDKESESGFVGERF 119

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTI 322
           Y   GLK +++    NR  +   + + + EK G     VE A+ +     E    Y N I
Sbjct: 120 YSDEGLKEFIKFLDGNREQLIQNVISMEGEKNGIP---VEVAMVYNTSYSENLHSYVNNI 176

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F 
Sbjct: 177 NTHEGGTHLSGFRRGLTSTLKKYADASGMLDKLKFEIQGDDFREGLTAIVSVKVSEPQFE 236

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + +    V  ++ +   +YL +NP +A  +++ VI  ++ R    K RE+  
Sbjct: 237 GQTKTKLGNREVSAAVSQSVSEMLTNYLEENPDDAKVIVQKVILAAQARHAATKAREMVQ 296

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKL+DCS       E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV
Sbjct: 297 RKTVMSIGGLPGKLSDCSDQDPVNCEVFLVEGDSAGGTAKQGRDRAFQAILPLRGKILNV 356

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASL 554
             A   K+  N++I ++  ALG    ++        + LRY KV+IM DADVDG+HI +L
Sbjct: 357 EKAMQHKVFENEEIKNIYTALGVTIGTEEDSKALNLDKLRYHKVVIMCDADVDGSHIETL 416

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605
           +LTFF++ M +LIE  H+++ +PPL+ + +GTK  YA  ++ + +I + F 
Sbjct: 417 ILTFFFRYMKELIEAGHIYIATPPLYLVKKGTKKRYAWSDKERDEIADSFN 467


>gi|9971383|dbj|BAB12498.1| DNA gyrase B subunit [Sporocytophaga cauliformis]
          Length = 475

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 186/484 (38%), Positives = 275/484 (56%), Gaps = 19/484 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVAR-QNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           D  +Y++SGGLHGVG+SVVNALS+ L  TV      I+ Q++ +G  L P+++  +    
Sbjct: 1   DKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGKIYEQEYEKGKALYPVKQIGETTK- 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
           RGT +TF PD  IF     F    L    +  ++L+  +   ++  +E+ EK    + E 
Sbjct: 60  RGTIVTFFPDETIFTQTTEFSYDTLSARMRELSFLNKGITITFTDKREVDEKG-EFKTEV 118

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           F+   GLK Y++    NR  I + + +   EK       VE A+ +       I SY N 
Sbjct: 119 FHSDEGLKEYIRYLDGNREPIIAHVISMDHEK---GEIPVEVALIYNTSYTENIFSYVNN 175

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEF 379
           I T EGGTH  G R  LTR +KKYA+ +    K    I  DD       I+SV + EP+F
Sbjct: 176 INTHEGGTHLQGFRTGLTRSLKKYADASGMLDKLKFDISGDDFREGLTAIISVKVAEPQF 235

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV- 438
            GQTKTKL + +    V  A+ +  ++YL +NP +A  +++ VI  ++ R   +K RE+ 
Sbjct: 236 EGQTKTKLGNREVVSPVSQAVSEMIENYLEENPNDARIIVQKVILAAQARHAAKKAREMV 295

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RKT +    LPGKL+DCS+      E+++VEGDSAGG+AKQ R+R+ QA+LPLRGKILN
Sbjct: 296 QRKTVMGGGGLPGKLSDCSEQDPARCEVYLVEGDSAGGTAKQGRDRAFQAILPLRGKILN 355

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIAS 553
           V  A   K+  N++I ++  ALG    +         E LRY KVIIM DADVDG+HI++
Sbjct: 356 VEKAMHHKVFENEEIRNIFTALGVTVGTAEDSKALNLEKLRYHKVIIMCDADVDGSHIST 415

Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613
           L+LTFF++ M +LIE+ H+++ +PPL+ + +G K  YA ++  + +  E       G   
Sbjct: 416 LILTFFFRFMKELIEEGHVYIAAPPLYLVKKGNKKEYAWNDVQRDQANERMG----GSAA 471

Query: 614 ISRF 617
           I R+
Sbjct: 472 IQRY 475


>gi|19909671|dbj|BAB87031.1| DNA gyrase subunit B [Arhodomonas aquaeolei]
          Length = 452

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 169/465 (36%), Positives = 271/465 (58%), Gaps = 18/465 (3%)

Query: 78  FSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137
             EV DN++DE +AGY   + + + G+  +TV DNGRGIPV+ H +   +S  E+I+T L
Sbjct: 1   VFEVADNSIDEALAGYCTEVAIVIHGDNSVTVTDNGRGIPVDIHTE-EGRSAAEVIMTVL 59

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKFDN++Y++SGGLHGVG+SVVNALS+ L + + +   I  Q++  G P+SPL+   
Sbjct: 60  HAGGKFDNNSYKVSGGLHGVGVSVVNALSERLRLVIKKHGQIHVQEYRDGEPVSPLKVVG 119

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +  +++GT+ITF P  + F +   F+   L K  +  ++L+  V+     ++   E    
Sbjct: 120 ET-DEQGTQITFHPSSETFTN-IDFNYDILAKRFRELSFLNPGVRIVLKDERSDKE---- 173

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
              + F + GG++ +++   +N+  +   +F   T+++      VE A+ W +     I 
Sbjct: 174 ---DVFEYAGGIRAFVEHLNKNKRPLHPAVFHLSTQRE---EVQVEVAMQWNDSYQESIF 227

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
            + N I   +GGTH +G R ALTR +  Y E      K  ++   DD+      ++SV +
Sbjct: 228 CFTNNIPQRDGGTHMAGFRAALTRTLNAYMEAEGYTKKLKVNPSGDDIREGLTAVVSVKV 287

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRR 433
            +P+F+ QTK KLVS + +  VE+AL +    +L ++P +A  ++E VI         RR
Sbjct: 288 PDPKFSSQTKDKLVSSEVKGPVESALAEALHDFLYEHPQDAKAIIEKVIDAARARDAARR 347

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            +    RK A+    LPGKLADC +     +E+++VEGDSAGGSAKQ R+R  QA+LPL+
Sbjct: 348 AREMTRRKGALDIAGLPGKLADCQERDPANSEIYLVEGDSAGGSAKQGRDRRTQAILPLK 407

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537
           GKILNV  A  +K+ ++ ++  L+ ALGC   + ++  + LRY +
Sbjct: 408 GKILNVEKARFDKMLSSAEVGTLITALGCGIGKDEFDPDKLRYHR 452


>gi|67809845|gb|AAY81979.1| DNA gyrase beta subunit [Wolbachia pipientis]
          Length = 423

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 162/428 (37%), Positives = 237/428 (55%), Gaps = 12/428 (2%)

Query: 57  PVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRG 115
            VR RPGMYIG TD+   LHH+  EVIDNA+DE +AGY + IEVS++ +G ++V DNGRG
Sbjct: 1   AVRKRPGMYIGDTDDGSGLHHMVYEVIDNAIDESLAGYCDKIEVSINKDGSVSVTDNGRG 60

Query: 116 IPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR 175
           IP + H +    S  E+I+T LHAGGKFD++TY++SGGLHGVGISVVNALS  L +T+ R
Sbjct: 61  IPTDIHEE-EGISAAEVIMTQLHAGGKFDSNTYKVSGGLHGVGISVVNALSSWLELTIWR 119

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
                  +F  G  + PL+   +  NKRGT++TF P  + F     F  + L    +  A
Sbjct: 120 NKKEHFMRFEDGESIEPLKVVNENTNKRGTKVTFMPSTETFNGIN-FSYSTLESRIRELA 178

Query: 236 YLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSE-IFTGKTE 293
           +L+  +       + E   +    +  +     G   ++Q   +N++ ++      G  E
Sbjct: 179 FLNSNIDITLRDLRNEPYTESHFNQSNQSKDNFGTANFVQYLDKNKTHVTKIASMKGDAE 238

Query: 294 KKGTH-RGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350
             G     ++EW  ++      +  + N I   +GGTH +G R ALTR I  YA      
Sbjct: 239 DLGISLEISMEWNDSY---YENMLCFTNNIRQRDGGTHLAGFRSALTRCINTYATNEGFL 295

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            K  +++  +D+      +LS+ + +P+F+ QTK KLVS +A+  VE+ + D     L  
Sbjct: 296 KKAKVNLTGEDVREGLTCVLSLKMPDPKFSSQTKDKLVSSEARAVVESIVSDKLSTILET 355

Query: 411 NPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           +P  A  ++E  I  ++ R   RK RE V  K  I    LPGKLADC +     +ELFIV
Sbjct: 356 DPKLAASIVERAIRSAKGREAARKARELVKSKNNIDIATLPGKLADCQEKAPELSELFIV 415

Query: 470 EGDSAGGS 477
           EG+SAGG+
Sbjct: 416 EGNSAGGT 423


>gi|291539734|emb|CBL12845.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Roseburia intestinalis XB6B4]
          Length = 446

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 149/459 (32%), Positives = 222/459 (48%), Gaps = 25/459 (5%)

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
               AYL+  +   +   +         E   ++   G+  +++   +   ++  ++   
Sbjct: 1   MHETAYLNPALTIIYEDKR-----GPEVEHIVYHEEEGIIGFVKDLNKKNEVLH-DVVYF 54

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
           K E+ G    TVE A  +  E    I  +CN I   EGGTH +G +   T  I  YA   
Sbjct: 55  KGEQDGI---TVEAAFQYTNEFHENILGFCNNIFNAEGGTHITGFKTVFTTVINSYAREL 111

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               ++  +    D+      I+S+   +P F GQTKTKL + DA R       D    Y
Sbjct: 112 GILKEKDSNFTGADVRNGMTAIVSIKHPDPRFEGQTKTKLDNQDASRVTAKVTGDEIQLY 171

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
             +N      ++    + ++ R    + +              GKLA+C    A   E+F
Sbjct: 172 FDKNLEVLKTVISCAEKAAKIRKTEERAKTNLLTKQKFSFDSNGKLANCESRDASICEIF 231

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR---- 523
           IVEGDSAGGSAK AR+R+ QA+LP+RGKILNV  A  +K+  N +I  ++ A GC     
Sbjct: 232 IVEGDSAGGSAKTARDRNFQAILPIRGKILNVEKASIDKVLANAEIKTMINAFGCGFSEG 291

Query: 524 TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR-I 582
             + +    LRY+K+IIM DADVDGAHI++LLLT FY+ M +LI + H+++  PPL++ I
Sbjct: 292 YGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIYEGHVYVAMPPLYKAI 351

Query: 583 TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLR 642
               +  Y +D+      LE ++K+ K    + R+KGLGEM A QL ET ++   R L R
Sbjct: 352 PSKGEEEYLYDDA----ALERYRKNHKSNFTLQRYKGLGEMDAEQLWETTLNPETRILKR 407

Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           +EI       +   D    LMG     R  FI E A   
Sbjct: 408 IEIEDG----RMASDITELLMGNDVPPRKMFIYEHAKDA 442


>gi|260221774|emb|CBA30674.1| DNA gyrase subunit B [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 731

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 178/499 (35%), Positives = 272/499 (54%), Gaps = 34/499 (6%)

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFS------ 185
           + LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +T+ R   + + +FS      
Sbjct: 1   MALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKMLRLTIRRDGKVHTLEFSKGFVQN 60

Query: 186 ------RGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
                  GI +SP++        RGT + F PD +IF +   F    L K  +  ++L+ 
Sbjct: 61  RIVETQNGIEVSPMKIIGDTEK-RGTEVHFLPDTEIFKENNDFHYEILSKRLRELSFLNN 119

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK--KGT 297
            V+     ++   E         F   GG++ ++    + ++++   +F    ++     
Sbjct: 120 GVRIRLKDERSGKEDD-------FAGAGGVQGFVNYVNKGKTVLHPNVFHAMGDRQSDQG 172

Query: 298 HRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               VE A+ W    N ++  + N I   +GGTH +GLR A+TR I KY E  +   K  
Sbjct: 173 TNIGVEVAMQWNSGFNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVISKYIEQNEMAKKAK 232

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           + +  DD+      +LSV + EP+F+ QTK KLVS + +  VE+ +      YL + P +
Sbjct: 233 VEVTGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRGPVEDIVGKLLADYLEERPND 292

Query: 415 ATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++  +IE +  R   RK R++ R+   +  + LPGKLADC +      E++IVEGDS
Sbjct: 293 AKIIVGKIIEAARAREAARKARDMTRRKGVLDGMGLPGKLADCQEKDPAMCEIYIVEGDS 352

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR-------- 525
           AGGSAKQ R+R  QA+LPLRGKILNV  A  EK+  + +I+ L+ ALG            
Sbjct: 353 AGGSAKQGRDRKFQAILPLRGKILNVEKARYEKLLTSNEILTLITALGTGIGKAGGSTGG 412

Query: 526 SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG 585
             +    LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ H+++  PPL+++  G
Sbjct: 413 DDFNVAKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKSG 472

Query: 586 TKSVYAHDEEHKQKILEEF 604
            + +Y          L   
Sbjct: 473 KEELYLQGPAELDGYLLRI 491



 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 4/90 (4%)

Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655
             ++ +       +      R+KGLGEM  +QL ET MD   R LLRV+I+  +    + 
Sbjct: 645 DFREAMAWLIGEAERTSSRQRYKGLGEMNPAQLWETTMDPTVRRLLRVQIDDAI----EA 700

Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685
                 LMG + + R  FI+  A    ++ 
Sbjct: 701 DRVFTMLMGDEVEPRRDFIETNALRAGNID 730


>gi|194339053|gb|ACF49442.1| GyrB [Amycolatopsis alba]
          Length = 449

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 169/456 (37%), Positives = 256/456 (56%), Gaps = 19/456 (4%)

Query: 73  ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
            LHHL  EV+DN++DE +AG+A  +EV+L  +G + VVD+GRGIPV+ HPK   K TLE+
Sbjct: 1   GLHHLVQEVVDNSVDEAMAGFATKVEVTLLSDGGVRVVDDGRGIPVDIHPK-EQKPTLEV 59

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
           +LT LHAGGKFD+ +Y +SGGLHGVG+SVVNALS +L   V R    + Q++   IP   
Sbjct: 60  VLTVLHAGGKFDSDSYAVSGGLHGVGVSVVNALSTKLIAEVKRGGHSWRQEYIDQIPGEL 119

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
            +         GT ITF  D  IF     ++   + +  Q  A+L+  +      ++   
Sbjct: 120 QDL--GPAEDTGTVITFWADGGIFET-TTYNFETISRRLQEMAFLNKGLTLSLRDERVAD 176

Query: 253 EKYGIP--------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
           E+            +++ + +PGGL+ +++    ++  I   + + + +  G     VE 
Sbjct: 177 EETEEDASGQAARVKEKTYCYPGGLEDFVKHINGSKDPIHPNVISFEAKGTG---LEVEV 233

Query: 305 AIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDD 361
           A+ W     P + ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  DD
Sbjct: 234 AMQWNNGFTPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDANLTGDD 293

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
           +      I+S+ + EP+F GQTKTKL + +A+  V+    +    +  +NP E+  ++  
Sbjct: 294 VREGLAAIVSIKLSEPQFEGQTKTKLGNSEAKTFVQQTSNEWLADWFERNPTESKTIINK 353

Query: 422 VIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
            I  +  R+  RK R+ V RK A+    LPGKL DC        EL+IVEGDSAGGSAK+
Sbjct: 354 SISSAHARMAARKARDLVRRKGALEIGGLPGKLKDCRSTNPSECELYIVEGDSAGGSAKE 413

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            R+   QA+LP+RGKI+NV  A  +++  N ++  L
Sbjct: 414 GRDSMYQAILPIRGKIINVEKARIDRVLKNTEVQSL 449


>gi|13517025|dbj|BAB40395.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04458]
          Length = 474

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 181/483 (37%), Positives = 265/483 (54%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALS+ L  TV R+  I+ Q++ RG  + P++      +  
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSEHLKATVHREGKIWEQEYERGKTMYPVKSVG-ASDMT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF PD  IF     +    L    +  AYL+  V    +  +   EK      E F
Sbjct: 60  GTVVTFHPDKTIFTQTTEYSYDTLANRMRELAYLNKGVTISLTDKRNKDEKG-EFVGETF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTI 322
           +   GLK ++    E R  +   + + + EK G     VE A+ +     E    Y N I
Sbjct: 119 FSEQGLKEFITFLDETRVPLIQNVISMEGEKNGIP---VEVAMIYNTGFSENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLSGFRRGLTSTLKKYADSSGLLDKLKFEISGDDFREGLTAIVSVKVAEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +    V  A+ +   +YL ++P +A +++E V   ++ R    K RE+ +
Sbjct: 236 GQTKTKLGNREVTSAVSQAVSEMLTNYLEEHPEDAKQIVEKVKLAAQARHAAAKAREMVQ 295

Query: 441 KTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +   +    LPGKL+DC+       ELF+VEGDSAGG+AK  R+R+ QA+LPLRGKILNV
Sbjct: 296 RKNPMGGGGLPGKLSDCADQDPGNCELFLVEGDSAGGTAKMGRDRNFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASL 554
             A   K+  N++I ++  ALG    ++        E LRY KV+IM DADVDG+HI +L
Sbjct: 356 EKAMQHKVFENEEIKNIYTALGVTIGTEEDSKALNLEKLRYHKVVIMCDADVDGSHIETL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +LIE  H+++ +PPL+ + +G+K  YA D+  +  I+E       G   I
Sbjct: 416 ILTFFFRYMRELIEGGHVYIATPPLYLVKKGSKKRYAWDDGERDAIIEGM----NGGASI 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|194339097|gb|ACF49464.1| GyrB [Amycolatopsis palatopharyngis]
          Length = 439

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 172/446 (38%), Positives = 255/446 (57%), Gaps = 21/446 (4%)

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133
           LHHL  EV+DN++DE +AGYA  +EV+L  +G + VVD+GRGIPV+ HPK   + TLEI+
Sbjct: 1   LHHLVWEVVDNSVDEAMAGYATRVEVTLLADGGVRVVDDGRGIPVDMHPK-EKRPTLEIV 59

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           LT LHAGGKFD+ +Y +SGGLHGVG+SVVNALS +L V V R   I++Q++    P   +
Sbjct: 60  LTVLHAGGKFDSDSYAVSGGLHGVGVSVVNALSAQLDVEVHRDGRIWTQRYDHSKPGELI 119

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           +     +   GT ITF  DP+IF     F    + +  Q  A+L+  +      ++  AE
Sbjct: 120 DAGPTSK--TGTSITFWADPEIFETTH-FSVETVSRRLQEMAFLNKGLTIVLRDERPEAE 176

Query: 254 KYGIPEKE----------EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
                              +++PGGL+ +++    ++  I   +   +++ +G     VE
Sbjct: 177 PTEEAVDAAGTPANITELTYHYPGGLEDFVKHINGSKDPIHKSVIGFESQGEGVQ---VE 233

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISD 360
            A+ W  +  P + ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  D
Sbjct: 234 VAMQWNTQYTPSVYTFANTINTPEGGTHEEGFRAALTRVVNSYARDKKLLKEKDTNLTGD 293

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D+      I+SV + EP+F GQTK KL + +A+  V+    +    +  +NP EA  ++ 
Sbjct: 294 DVREGLAAIISVKLAEPQFEGQTKQKLGNSEAKSFVQTTTNEWLSDWFERNPSEARAVIN 353

Query: 421 WVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
             +  ++ R+  RK R+ V RK A+    LPGKL DC        EL+IVEGDSAGGSAK
Sbjct: 354 KAVSSAQARMAARKARDLVRRKGALDIGGLPGKLKDCRSTKPEECELYIVEGDSAGGSAK 413

Query: 480 QARNRSNQAVLPLRGKILNVASAGSE 505
           + R+   QA+LP+RGKI+NV  A  +
Sbjct: 414 EGRDSMYQAILPIRGKIINVEKARID 439


>gi|313625793|gb|EFR95411.1| DNA gyrase subunit B [Listeria innocua FSL J1-023]
          Length = 386

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 136/384 (35%), Positives = 220/384 (57%), Gaps = 13/384 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
            ++ +Y+   I++LEGLE VR RPGMYIG T ++ LHHL  E++DNA+DE +AG+   IE
Sbjct: 11  ESASDYNEDQIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVWEIVDNAIDEALAGFCTEIE 70

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           ++++ +  +TV DNGRGIP   + K   + T+E+I T LHAGGKF    Y++SGGLHGVG
Sbjct: 71  ITIEADNSITVRDNGRGIPTGINEKI-GRPTVEVIFTVLHAGGKFGGGGYKVSGGLHGVG 129

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS  L V V R+   + Q+F RG  +  +E + +  + RGT + F PDP+IF +
Sbjct: 130 ASVVNALSTSLEVYVHREGQKYYQRFERGDVVMDMEVQGET-DYRGTIVHFTPDPQIFTE 188

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              FD   L   T+  A+L+  +       +E  +      +++F++ GG+++Y++   +
Sbjct: 189 TTEFDFDTLRTRTRELAFLNRGLTISIEDKREEHK-----VRKDFHYEGGIRSYVEHLNK 243

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVA 337
            + +I       + E+       VE ++ +          + N I T EGGTHESG + A
Sbjct: 244 AKDVIHEPPIYLEGERDDIM---VEISMQYNTGFSSNIISFANNIHTYEGGTHESGFKTA 300

Query: 338 LTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR I  YA   +  +    ++  +D+      I+S+   +P+F GQTKTKL + +A+  
Sbjct: 301 LTRVINDYARRNKLFKDSDDNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARSI 360

Query: 396 VENALRDPFDHYLVQNPIEATKLL 419
            +    +  + ++++NP  A K++
Sbjct: 361 TDKLFSEALNKFMMENPDVAKKIV 384


>gi|255019556|ref|ZP_05291647.1| DNA gyrase subunit B [Acidithiobacillus caldus ATCC 51756]
 gi|254971015|gb|EET28486.1| DNA gyrase subunit B [Acidithiobacillus caldus ATCC 51756]
          Length = 388

 Score =  324 bits (829), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 146/388 (37%), Positives = 222/388 (57%), Gaps = 16/388 (4%)

Query: 306 IAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDL 362
           + W +     +  + N I   +GGTH +G R A+TR +  Y E     +K  +++ + D+
Sbjct: 1   MQWNDGYSESVYPFTNNIPQADGGTHLTGFRAAMTRALGAYIERETANSKSKVAVEAADM 60

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
                 +LSV + +P+F+ QTK KLVS + +  VE  + D    +L ++P+EA  ++  +
Sbjct: 61  REGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVEALVSDQLTSFLDEHPVEARAIVGKI 120

Query: 423 IERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
           +E +  R   RK RE   RK+A+    LPGKLADC +      E+++VEGDSAGGSAKQ 
Sbjct: 121 VEAARAREAARKAREITRRKSALDVANLPGKLADCQERDPALCEIYLVEGDSAGGSAKQG 180

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVII 540
           R+R  QA+LPL+GKILN   A  ++I ++ ++  L+ ALG    +     E LRY ++II
Sbjct: 181 RDRKFQAILPLKGKILNAERARFDRILSSDEVGTLITALGTGIGADEFRLEKLRYHRIII 240

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKI 600
           MTDADVDG+HI +LLLTFF+++M  L+E  H+++  PPLF+I +G +  Y  DE   ++ 
Sbjct: 241 MTDADVDGSHIRTLLLTFFFRQMPALLEHGHIYIAQPPLFKIAKGKQETYVTDERALEQF 300

Query: 601 LE-EFKKHGKG------KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
           L+ E +K GK          I R+KGLGEM   QL +T M+   R L+R+ ++       
Sbjct: 301 LKTEAEKSGKSLEETKAGFTIQRYKGLGEMNPEQLWDTTMNPEHRHLVRITVDD----AA 356

Query: 654 DTQDSINKLMGTKADERFKFIQERASFI 681
               +   LMG     R  +I+E A F 
Sbjct: 357 MADQTFGLLMGDAVAPRRAYIEENAHFA 384


>gi|194339067|gb|ACF49449.1| GyrB [Amycolatopsis echigonensis]
          Length = 449

 Score =  323 bits (828), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 172/455 (37%), Positives = 258/455 (56%), Gaps = 19/455 (4%)

Query: 72  KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLE 131
           + LHHL  EV+DN++DE +AGYA  +EV+L  +G + VVD+GRGIPV+ HPK   K TLE
Sbjct: 1   RGLHHLVQEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVDMHPK-EKKPTLE 59

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           ++LT LHAGGKFD+ +Y +SGGLHGVG+SVVNALS +L   +      + Q++   +P  
Sbjct: 60  VVLTILHAGGKFDSDSYAVSGGLHGVGVSVVNALSTKLLAEIKVNGRSWRQEYLNQVP-G 118

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
           PLE      +  GT ITF  D  IF     ++   + +  Q  A+L+  +      ++  
Sbjct: 119 PLEDLGPATD-TGTTITFWADDSIFET-TTYNFETISRRLQEMAFLNKGLTLSLRDERVA 176

Query: 252 AEKYGIP--------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
            E+            ++  + +PGGL+ +++    ++  I   + +   +  G     VE
Sbjct: 177 DEETEEDAAGKQARVKEVVYCYPGGLEDFVKHINGSKDPIHESVISFDAKGAG---LEVE 233

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISD 360
            A+ W     P + ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  D
Sbjct: 234 VAMQWNTGFTPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDANLTGD 293

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D+      I+S+ + EP+F GQTKTKL + +A+  V+    +    +  +NP EA  ++ 
Sbjct: 294 DVREGLAAIVSIKLAEPQFEGQTKTKLGNSEAKTFVQQQSNEWLADWFERNPSEAKTIIN 353

Query: 421 WVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
             I  ++ RL  RK R+ V RK A+    LPGKL DC  N     EL+IVEGDSAGGSAK
Sbjct: 354 KSISSAQARLAARKARDLVRRKGALEIGGLPGKLKDCRSNDPGECELYIVEGDSAGGSAK 413

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           + R+   QA+LP+RGKI+NV  A  +++  N ++ 
Sbjct: 414 EGRDSMYQAILPIRGKIINVEKARIDRVLKNTEVQ 448


>gi|291535202|emb|CBL08314.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Roseburia intestinalis M50/1]
          Length = 446

 Score =  323 bits (828), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 148/459 (32%), Positives = 222/459 (48%), Gaps = 25/459 (5%)

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
               AYL+  +   +   +         E   ++   G+  +++   +   ++  ++   
Sbjct: 1   MHETAYLNPALTIIYEDKR-----GPEVEHIVYHEEEGIIGFVKDLNKKNEVLH-DVVYF 54

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
           K E+ G    TVE A  +  E    I  +CN I   EGGTH +G +   T  I  YA   
Sbjct: 55  KGEQDGI---TVEAAFQYTNEFHENILGFCNNIFNAEGGTHITGFKTVFTTVINSYAREL 111

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               ++  +    D+      I+S+   +P F GQTKTKL + DA R       D    Y
Sbjct: 112 GILKEKDSNFTGADVRNGMTAIVSIKHPDPRFEGQTKTKLDNQDASRVTAKVTGDEIQLY 171

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
             +N      ++    + ++ R    + +              GKLA+C    A   E+F
Sbjct: 172 FDKNLEVLKTVISCAEKAAKIRKTEERAKTNLLTKQKFSFDSNGKLANCESRDASICEIF 231

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR---- 523
           IVEGDSAGGSAK AR+R+ QA+LP+RGKILNV  A  +K+  N +I  ++ A GC     
Sbjct: 232 IVEGDSAGGSAKTARDRNFQAILPIRGKILNVEKASIDKVLANAEIKTMINAFGCGFSEG 291

Query: 524 TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR-I 582
             + +    LRY+K+IIM DADVDGAHI++LLLT FY+ M +LI + H+++  PPL++ I
Sbjct: 292 YGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIYEGHVYVAMPPLYKAI 351

Query: 583 TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLR 642
               +  Y +D+      LE ++++ K    + R+KGLGEM A QL ET ++   R L R
Sbjct: 352 PSKGEEEYLYDDA----ALERYRRNHKSNFTLQRYKGLGEMDAEQLWETTLNPETRILKR 407

Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           +EI       +   D    LMG     R  FI E A   
Sbjct: 408 IEIEDG----RMASDITELLMGNDVPPRKMFIYEHAKDA 442


>gi|325191142|emb|CCA25924.1| DNA topoisomerase putative [Albugo laibachii Nc14]
          Length = 1141

 Score =  323 bits (828), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 138/639 (21%), Positives = 242/639 (37%), Gaps = 51/639 (7%)

Query: 64  MYIGGTD-EKALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGNG----FLTVVDNGRGIP 117
           MY+   +   AL+ +F E+I NA+D          ++V +D       ++ + ++GRGIP
Sbjct: 27  MYLESIEYVPALYKIFDEIIVNALDNKKRDCKMKALDVVIDTTNEKQPWIMIYNDGRGIP 86

Query: 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN 177
           V+ HP        E++   L  G  FD+ +   +GG HG G  + N  S+   V      
Sbjct: 87  VQIHP-TEQIYIPELVFGNLLTGSNFDDHSTRFTGGRHGYGAKLTNIFSNTFIVETGDTV 145

Query: 178 TIFSQK--FSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGDKA--GFDAARLLKMT 231
           T    K  +   +        E      K  TRI+F PD K+F  ++        L K  
Sbjct: 146 TGMKYKQIWRNNMRELEEPHIEPLSAGVKDYTRISFSPDLKLFQLESLSTDILRLLKKRV 205

Query: 232 QSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGK 291
              A     VK   +                  F   ++ +   +  + +  +S   T +
Sbjct: 206 YDVAGCVDDVKVSLNG----------SVIPISGFESYIRGFEFHQKLSTTKGNSNCVTSR 255

Query: 292 TEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN 351
             K           +   E      S+ N I T  GGTH   +   +TR +  +    + 
Sbjct: 256 VNK------HWHIGVLPSEVGFTQVSFVNGISTLRGGTHVLHVVEQITRRVADHIV--KK 307

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
              I+     +       ++  I  P F  Q K  L S  +       L + F   ++++
Sbjct: 308 YSEINATPAQVKPYLAVYINCMIENPTFDSQMKECLTSRPSSFGTLCNLPERFFKAVIRD 367

Query: 412 PIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
                  ++ +  RS++R    K+    R  +I  +           + +H   L + EG
Sbjct: 368 TGIVEHTVQGI--RSKQRSALMKKVSTARSKSIFNVPKLEDANLAGGSQSHECSLILTEG 425

Query: 472 DSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528
           DSA   A        R    V PLRGK+LNV  A   ++  N + M+L   LG +    Y
Sbjct: 426 DSAKALAVAGLAVVGRDRFGVFPLRGKLLNVRDATVNQLSKNSEFMNLCTILGLQMGESY 485

Query: 529 REED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK-HLFLISPPLFRIT 583
                   LRY  VI+MTD D DG+HI  LL   F+    +L+     + +   P+ + T
Sbjct: 486 DTIKKRQQLRYGHVIVMTDQDYDGSHIKGLLFNIFHTFWPNLLRSSEFIQVFVTPIIKAT 545

Query: 584 QGT-----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
                   K +  +         +    +      I  +KGLG   +++ +E   + NK 
Sbjct: 546 SKRDSKHEKVLSFYSLPEYLDWRKSLAANEGKNYYIKYYKGLGTSTSAEAREYFSNLNKH 605

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
            L++++  +     +  +   +K   ++A +R  ++ + 
Sbjct: 606 -LIQMK-WQSEEDGQLLEMVFSK---SRACDRKNWLLQN 639


>gi|267151|sp|P30190|TOP2_TRYCR RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|162307|gb|AAA85575.1| DNA topoisomerase II [Trypanosoma cruzi]
 gi|737876|prf||1923363A DNA topoisomerase II
          Length = 1232

 Score =  323 bits (828), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 133/672 (19%), Positives = 243/672 (36%), Gaps = 69/672 (10%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTDEK-----------------------ALHHLFSEVI 82
           AS  + L  ++ V +RP MY+G  D                          L  +  E++
Sbjct: 4   ASKYKKLTPIDHVLIRPEMYVGSVDTSSSSMFVFDHEKGRMVWESLKVNHGLLKIVDEIL 63

Query: 83  DNAMDEVIA--GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140
            NA D +    G    I V +   G +T+ ++G GIP+    K       E++   L   
Sbjct: 64  LNASDNIANKGGRMTYIRVHITEAGEITIENDGAGIPI-VRSKEHKLYIPEMVFGHLLTS 122

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI--PLSPLEKKEK 198
             +D+++     G HG G  + N LS    V    +   F   +   +    +P      
Sbjct: 123 SNYDDTSQNAVAGRHGYGAKLTNILSHRFSVCCRTKGKEFHMSWHDHMRRATAPRVSNVD 182

Query: 199 VRNKRGTRITFRPDPKIF----GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
            + K  TR+ F PD + F       +      L K     A +   ++   +        
Sbjct: 183 PKEKNLTRVKFLPDYERFGLDANKISHDMKRVLHKRIMDLAAMFPSIEISLNG------- 235

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE 314
                   F F       +     + S            + G     + +  +       
Sbjct: 236 ------VPFAFKSFADYAMLYSSPSSSGEMPPAPFVYESRNG----AIAFIPSLTAGTRR 285

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFI 374
           I    N ++T  GGTH +  +  L   ++   +  +    +   +  L    + +  V +
Sbjct: 286 IFGVVNGVVTHNGGTHCNAAQEVLQSSLESVEKALKKDNKVIDTNRVLRHFMILVFLVQV 345

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
           +   F  Q K +LVS+     V       F   L    +EA           E       
Sbjct: 346 QPK-FDSQNKARLVSVPTMPRVPRQELMDFL--LRMPFLEAHVNTVTGQLADELNKEMGA 402

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ---ARNRSNQAVLP 491
            R ++ K+ I  +          ++      L + EGDSA   A+    +  +    V P
Sbjct: 403 GRRMSSKSLISSITKLVDATTTRRDPRFVRTLIVTEGDSAKALAQNSLSSDQKRYTGVFP 462

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAH 550
           LRGK+LNV +   ++++N +++ +L  ALG      Y++ E+LRY+++++MTD D DG+H
Sbjct: 463 LRGKLLNVRNKNLKRLKNCKELQELFCALGLELGKIYKDAEELRYQRLLVMTDQDADGSH 522

Query: 551 IASLLLTFFYQEMYDLIEQ--KHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKH 607
           I  L++  F      L+ +    + + S P+ ++  +   +      +   K     K H
Sbjct: 523 IKGLVINAFEALWPSLLNRNPGFISIFSTPIVKVRLRDKSTHSFFSLKEFHKW---QKTH 579

Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667
           G        +K LG    ++ KE   D +K T+  V    + N  K      +     + 
Sbjct: 580 GNVSYTAKYYKALGTSTTAEGKEYFKDMDKHTMRLVV---ERNDHKLLDSVFD---SQEV 633

Query: 668 DERFKFIQE-RA 678
           + R  ++ +  A
Sbjct: 634 EWRKDWMTKANA 645


>gi|28866794|dbj|BAC65175.1| DNA gyrase B subunit [Cyclobacterium marinum]
          Length = 478

 Score =  323 bits (827), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 175/484 (36%), Positives = 275/484 (56%), Gaps = 16/484 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  TY++SGGLHGVG+S VNALS  + VTV R   I  Q++ RG+P   + +  +  ++R
Sbjct: 1   DKDTYKVSGGLHGVGVSCVNALSSSMKVTVHRGGKIHEQEYVRGVPQYEVREIGET-DRR 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F+PD +IF     +    +    +  A+L+  +K      +E  E+      ++F
Sbjct: 60  GTHVHFKPDHEIFQ-ILEYKYETIANRLREMAFLNAGIKISLKDLREKDEEG-NYRADDF 117

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           Y  GGL  +++   EN+  I  +    ++EK G     V+ A+ +       + SY NTI
Sbjct: 118 YSEGGLIEFVEYLDENKQKIIEKPIYIESEKNGVP---VQVAMGYNNSYTENVVSYVNTI 174

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R ALTR +K YA+ +    K  I I  DD       ++SV + EP+F 
Sbjct: 175 NTYEGGTHVSGFRRALTRTLKSYADKSGMLDKVKIDISGDDFREGLTAVISVKVAEPQFE 234

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + D    V+ ++ +    +L+++P EA  ++  V+  ++ R   +K RE+ +
Sbjct: 235 GQTKTKLGNSDVTGAVDASVSETLQFWLLEHPKEAKIIIGKVVLAAQARHAAKKAREMVQ 294

Query: 441 KTAIRKLRLPGKL-ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +          ADC+ +     EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV
Sbjct: 295 RKNVLGGGGLPGKLADCANSDPAVCELYLVEGDSAGGSAKQGRDRDFQAILPLKGKILNV 354

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASL 554
             A   KI +N +I +++ ALG +  +   E+      LRY K+IIMTDAD+DG+HI +L
Sbjct: 355 EKAQEHKIYDNDEIKNILTALGVKFGTANDEKELDLSKLRYHKIIIMTDADIDGSHIRTL 414

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIE 613
           +LT F++ M +LIE  ++++  PP + + +G +  Y   EE +Q++++E    GK   + 
Sbjct: 415 ILTLFFRYMRNLIESGYVYIALPPFYLLKRGKEERYCWTEEDRQRVVKELAPDGKEDSVN 474

Query: 614 ISRF 617
           I R+
Sbjct: 475 IQRY 478


>gi|9632132|ref|NP_048939.1| hypothetical protein PBCV1_A583L [Paramecium bursaria Chlorella
           virus 1]
 gi|2447074|gb|AAC96932.1| PBCV-1 DNA topoisomerase II [Paramecium bursaria Chlorella virus 1]
          Length = 1061

 Score =  323 bits (827), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 152/672 (22%), Positives = 257/672 (38%), Gaps = 84/672 (12%)

Query: 47  SSIRILEGLEPVRMRPGMYIGG---------------------TDEKALHHLFSEVIDNA 85
           S  + L   E V  RP  YIG                      T   AL  +F E+I N+
Sbjct: 2   SRYQKLTQREHVLARPDTYIGSVAPQTKNEWVYVDGKIIRKDVTYSPALLKIFDEIITNS 61

Query: 86  MDEVIAGYA-NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144
            D         +++V +D    ++V ++G  IP+E H         E+I   L AG  FD
Sbjct: 62  ADCYNRDKKLTVLKVCIDE-KSVSVHNDGCNIPIEKHD-VEKCYIPELIFGHLLAGENFD 119

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           ++      G +G+G    N  S +  V +      + Q +   + +    K         
Sbjct: 120 DTEQRTGAGRNGIGSKATNIFSKKFDVEICDGKKKYKQSWENNMSVMSKPKVTTCSKDSY 179

Query: 205 TRITFRPDPKIF--GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
              TF PD + F          + +++     A +  +VK   +  +   +      ++ 
Sbjct: 180 ITTTFFPDFERFGIDSFDDDTMSIMVRRVYDMAAVLNKVKVMLNGKRLEIKNT----EDY 235

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
           F    G KT  +   E+                       + A++  +E   ++      
Sbjct: 236 FSLYVGNKTETKRAFEHTP------------------ENWDVAVSCSDEFTPVSFV--NS 275

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
           +   GGTH + +  A+ +           K+ I +    +       ++  +  P F  Q
Sbjct: 276 VVTRGGTHVNAVTDAVAKA----VVEAAAKKKIVVKPMTVKGRMFVFVNATVVNPTFDSQ 331

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK  L S +A+ T+ +                   LL+ VI+ +  R     Q+E+ +  
Sbjct: 332 TKEILTSRNARVTLSDTFVKKAV----------GVLLDAVIQETNVRTSLVDQKELKKTD 381

Query: 443 AIRKLRL--PGKLADCSQ---NIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRG 494
             +K R+    KL D +    N +    L + EGDSA   A    +   R    V PLRG
Sbjct: 382 GAKKSRVSGIPKLNDAAWAGTNHSKMCTLILTEGDSAATLAIAGLSVVGRERYGVFPLRG 441

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDADVDGAHIAS 553
           K+LNV  A    I  N++I  L Q LG +T   Y++   LRY  V+IMTDADVDG HI+ 
Sbjct: 442 KLLNVRDASVASITKNEEITALKQILGLQTGKVYKDTSSLRYGHVMIMTDADVDGTHISG 501

Query: 554 LLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612
           L++ FF+     L+E    L     P+    +G      +     +  ++  K +   K 
Sbjct: 502 LVMNFFHSCFPSLLEIPGFLKKFITPIVVAKKGKDVREFYSLPDYEDWVKTTKDY--SKY 559

Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
           +I  +KGLG   ++  K    +      L        +S +    S NK   T+A++R +
Sbjct: 560 QIKYYKGLGTSSSTDAKHYFSNLKT---LMKTFTWTSDSGELIDRSFNK---TRAEDRKE 613

Query: 673 FI--QERASFID 682
           ++   E  + +D
Sbjct: 614 WMTAYEPGNQLD 625


>gi|194339075|gb|ACF49453.1| GyrB [Amycolatopsis japonica]
          Length = 450

 Score =  323 bits (827), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 170/456 (37%), Positives = 258/456 (56%), Gaps = 19/456 (4%)

Query: 73  ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
            LHHL  EV+DN++DE +AGYA  +EV+L  +G + VVD+GRGIPV+ HPK   K TLE+
Sbjct: 1   GLHHLVQEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVDMHPK-EMKPTLEV 59

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
           +LT LHAGGKFD+ +Y +SGGLHGVG+SVVNALS +L   V      + Q+++  IP   
Sbjct: 60  VLTVLHAGGKFDSDSYAVSGGLHGVGVSVVNALSTKLVAEVKYGGRSWRQEYTDQIPGEL 119

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
            +         GT ITF  D  IF     ++   + +  Q  A+L+  +      ++   
Sbjct: 120 QDLGPATE--TGTTITFWADGDIFET-TTYNFETISRRLQEMAFLNKGLTLSLRDERVAD 176

Query: 253 EKYGIP--------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
           E+            +++ + +PGGL+ +++    ++  I + + + + +  G     VE 
Sbjct: 177 EETETDASGQAARVKEKTYCYPGGLEDFVKHINGSKDPIHASVISFEAKGTG---LEVEV 233

Query: 305 AIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDD 361
           A+ W     P + ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  DD
Sbjct: 234 AMQWNNGFTPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDANLSGDD 293

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
           +      I+S+ + EP+F GQTKTKL + +A+  V+    +    +  +NP EA  ++  
Sbjct: 294 VREGLAAIVSIKLSEPQFEGQTKTKLGNSEAKTFVQQTSNEWLADWFERNPTEAKTIINK 353

Query: 422 VIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
            I  ++ R+  RK R+ V RK A+    LPGKL DC        EL+IVEGDSAGGSAK+
Sbjct: 354 SISSAQARMAARKARDLVRRKGALEIGGLPGKLKDCRSTNPSECELYIVEGDSAGGSAKE 413

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            R+   QA+LP+RGKI+NV  A  +++  N ++  L
Sbjct: 414 GRDSMYQAILPIRGKIINVEKARIDRVLKNTEVQSL 449


>gi|6939958|dbj|BAA90685.1| DNA gyrase subunit B [Sphingobacterium spiritivorum]
          Length = 479

 Score =  322 bits (826), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 184/484 (38%), Positives = 276/484 (57%), Gaps = 15/484 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  TY++SGGLHGVG+S VNALS  L   V R   IF Q++ +G P   ++   +   + 
Sbjct: 1   DKDTYKVSGGLHGVGVSCVNALSTLLIAEVHRDGQIFKQEYEKGKPKYDVKAIGE-SERT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF PDP+IF     ++   L    +  A+L+  ++     ++EI +      K+ F
Sbjct: 60  GTTVTFFPDPEIFTMTTVYNYDTLSNRLRELAFLNKGIRLTIVDEREILDDG-SFRKDVF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTI 322
           +  GGL+ +++    NR  + S     +  K+G     VE A+ + +   E   SY N I
Sbjct: 119 FSEGGLQEFVKFLDGNRQSLISNPIYVEGIKQGVP---VELALQYNDTYSENVHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFA 380
            T EGG+H +G R  LTR +KKYAE +   + + +    DD       ++SV + EP+F 
Sbjct: 176 NTIEGGSHVAGFRRGLTRTLKKYAEDSGLLKNLKVEIAGDDFREGLTAVISVKVAEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVN 439
           GQTKTKL + +    V+ A+ +    YL +NP EA  +++ V I        R+ +  V 
Sbjct: 236 GQTKTKLGNNEVMGAVDVAVGEILSTYLEENPREAKMIVQKVVIAAQARAAARKAREMVQ 295

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKLADCS N  H  E+F VEGDSAGG+AKQ R+R  QA++PLRGKILNV
Sbjct: 296 RKTVMGGSGLPGKLADCSDNDPHKCEIFFVEGDSAGGTAKQGRDRKFQAIMPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASL 554
             A   KI  N++I ++  ALG    +         E LRY K++IMTDADVDG+HIA+L
Sbjct: 356 EKAMEHKIYENEEIKNMFTALGVSVGTADDAKALNLEKLRYHKIVIMTDADVDGSHIATL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIE 613
           +LTF+++ M +LIE  ++++ +PPL+ + +G +S YA  EE + + ++  K  GK   + 
Sbjct: 416 ILTFYFRYMKELIENGYVYIATPPLYLVKKGKESEYAWTEEQRLQAIQRLKGAGKEDSVH 475

Query: 614 ISRF 617
           + R+
Sbjct: 476 VQRY 479


>gi|290892043|ref|ZP_06555040.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|290558637|gb|EFD92154.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
          Length = 380

 Score =  322 bits (826), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 135/382 (35%), Positives = 217/382 (56%), Gaps = 13/382 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              Q  + +Y+   I++LEGLE VR RPGMYIG T ++ LHHL  E++DNA+DE +AG+ 
Sbjct: 7   TNVQENASDYNEDQIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVWEIVDNAIDEALAGFC 66

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             IE++++ +  +TV DNGRGIP   + K   + T+E+I T LHAGGKF    Y++SGGL
Sbjct: 67  TEIEITIEADNSITVRDNGRGIPTGINEKI-GRPTVEVIFTVLHAGGKFGGGGYKVSGGL 125

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALS  L V V R+   + Q+F RG  +  +E++ +  + RGT + F PDP+
Sbjct: 126 HGVGASVVNALSTSLEVYVHREGQKYYQRFERGDVVMDMEEQGET-DYRGTIVHFTPDPQ 184

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   FD   L   T+  A+L+  +       +E  +      +++F++ GG+++Y++
Sbjct: 185 IFTETTEFDFDTLRTRTRELAFLNRGLTISIEDKREEHK-----VRKDFHYEGGIRSYVE 239

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333
              + + +I       + E+       VE ++ +          + N I T EGGTHESG
Sbjct: 240 HLNKAKDVIHEPPIYLEGERDDIM---VEISMQYNTGFSSNIISFANNIHTYEGGTHESG 296

Query: 334 LRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            + ALTR I  YA   +  +    ++  +D+      I+S+   +P+F GQTKTKL + +
Sbjct: 297 FKTALTRVINDYARRNKLFKDSDDNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSE 356

Query: 392 AQRTVENALRDPFDHYLVQNPI 413
           A+   +    +  + ++++NP 
Sbjct: 357 ARSITDKLFSEALNKFMMENPD 378


>gi|13358812|dbj|BAB33152.1| DNA gyrase B subunit [Bacteroides fragilis]
          Length = 477

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 177/483 (36%), Positives = 275/483 (56%), Gaps = 15/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALS  +   V R   I+ Q++  G PL P+++   + +  
Sbjct: 1   DKGSYKVSGGLHGVGMSCVNALSTHMTTQVFRNGKIYQQEYEIGKPLYPVKEVG-IADHT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+  F PD  IF +   +D   L    +  AYL+  ++   +  + +  + G  + E F
Sbjct: 60  GTKQQFWPDDSIFTETI-YDYKILASRLRELAYLNAGLRISLTD-RRVVNEDGSFKHETF 117

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           Y   GL+ +++    +R  + +++    TEK+      +E AI +       I SY N I
Sbjct: 118 YSEEGLREFVRFIESSREHLINDVIYLNTEKQNIP---IEVAIMYNTGFSENIHSYVNNI 174

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH +G R ALTR +KKYAE ++   K  + I  DD       ++SV + EP+F 
Sbjct: 175 NTIEGGTHLAGFRRALTRTLKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFE 234

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +    V+ A+ +  ++YL ++P EA  +++ VI  +  R   RK RE+ +
Sbjct: 235 GQTKTKLGNNEVMGAVDQAVGEVLNYYLEEHPKEAKAIVDKVILAATARHAARKAREMVQ 294

Query: 441 KTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           + + +    LPGKLADCS       ELF+VEGDSAGG+AKQ RNR+ QA+LPLRGKILNV
Sbjct: 295 RKSPMSGGGLPGKLADCSDKDPQKCELFLVEGDSAGGTAKQGRNRAFQAILPLRGKILNV 354

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASL 554
             A   K   +++I ++  ALG    ++        + LRY K+IIMTDADVDG+HI +L
Sbjct: 355 EKAMYHKALESEEIRNIYTALGVTIGTEEDSKAANIDKLRYHKIIIMTDADVDGSHIDTL 414

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           ++TFF++ M  +I+  +L++ +PPL+   +G    Y   +  +QK ++ +    +  I  
Sbjct: 415 IMTFFFRYMPQIIQNGYLYIATPPLYLCKKGKIEEYCWTDAQRQKFIDTYGGGSENAIHT 474

Query: 615 SRF 617
            R+
Sbjct: 475 QRY 477


>gi|9971375|dbj|BAB12494.1| DNA gyrase B subunit [Microscilla furvescens]
          Length = 478

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 185/484 (38%), Positives = 276/484 (57%), Gaps = 16/484 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  TY++SGGLHGVG+S VNALS  L  TV R  T+F Q++SRGIP  P+++  K  +  
Sbjct: 1   DKDTYKVSGGLHGVGVSCVNALSTHLKATVHRNGTVFEQEYSRGIPQYPVKETGKT-DIT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F+PD  IF     +    +    +  A+L+  +K      +E  E      +E F
Sbjct: 60  GTIVHFKPDMDIFTVG-EYKYETVASRLRELAFLNAGIKLELIDHREQDENG-NDLQESF 117

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTI 322
           +  GGLK ++      R  +  +      E+       VE A+++     E   SY N I
Sbjct: 118 FSEGGLKEFVIYLDSTRERLIPDPIHINNEQ---GEIPVEVALSYNTSYSENVVSYVNNI 174

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH +G R ALTR +K YA+ +    K  + I  DD       ++S+ + EP+F 
Sbjct: 175 NTIEGGTHVAGFRRALTRTLKSYADKSGLLEKAKVEITGDDFREGLTAVVSIKVAEPQFE 234

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVN 439
           GQTKTKL + +A   V+++L +    YL ++P EA ++++ VI      +  R+ +  V 
Sbjct: 235 GQTKTKLGNSEASGAVDSSLSEALLTYLEEHPKEAKQIIQKVILAAQARQAARKAREMVQ 294

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK  +    LPGKLADCS       E+++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV
Sbjct: 295 RKNVLSGTGLPGKLADCSDKDPAKCEIYLVEGDSAGGSAKQGRDRKFQAILPLRGKILNV 354

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASL 554
             A   KI +N +I +++ ALG +   +  +     + LRY K+IIMTDAD+DG+HI +L
Sbjct: 355 EKAQEHKIYDNDEIKNIITALGVQFGKEDDQKALNTDKLRYHKIIIMTDADIDGSHIRTL 414

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIE 613
           +LTFF++ M +LIE  +L++  PPL+ I +G +  YA  E+ + +I++E    GK   + 
Sbjct: 415 ILTFFFRYMRELIENGYLYIALPPLYLIKKGKQERYAWTEDDRVRIVKEIAPEGKEDTVN 474

Query: 614 ISRF 617
           + R+
Sbjct: 475 VQRY 478


>gi|30580459|sp|Q9FAX1|GYRB_FLEEL RecName: Full=DNA gyrase subunit B
 gi|10039315|dbj|BAB13318.1| DNA gyrase B subunit [Flexibacter elegans]
          Length = 478

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 190/484 (39%), Positives = 273/484 (56%), Gaps = 16/484 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  TY++SGGLHGVG+S VNALS  L  TV R+  +F QK+S G P   +E   +  ++ 
Sbjct: 1   DKDTYKVSGGLHGVGVSCVNALSSLLVATVHREGKVFQQKYSTGNPQGAVEVVGQ-SDRT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT I F PD  IF     +    + K  +  +YL+  ++   +  +E  E+      EEF
Sbjct: 60  GTTIYFEPDATIFATT-EYKYETVSKRLRELSYLNKGIRLTLTDLRETDEQGRH-LYEEF 117

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTI 322
           +  GGLK +++     R  +       +   K      VE A+ +     E   SY N I
Sbjct: 118 FSEGGLKEFVEHLDSTRQPLLPAPIHVE---KTDGDIPVEVALIYNNSYSENVFSYVNNI 174

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R ALTR +K YA+ +    K  + I  DD       ++S+ + EP+F 
Sbjct: 175 NTHEGGTHVSGFRRALTRTLKSYADKSGMLEKAKVEITGDDFREGLTAVISIKVAEPQFE 234

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVN 439
           GQTKTKL + DA   V+NA+ +   +YL +NP EA  +++ VI      +  R+ +  V 
Sbjct: 235 GQTKTKLGNSDAIGAVDNAVSEILGYYLEENPREAKLIIQKVILAAQARQAARKAREMVQ 294

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK  +    LPGKLADCS       EL++VEGDSAGGSAKQ R+RS QA+LPLRGKILNV
Sbjct: 295 RKNVMGGTSLPGKLADCSDTNPERCELYLVEGDSAGGSAKQGRDRSFQAILPLRGKILNV 354

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASL 554
             A   KI +N++I +++ A+G    ++   +      LRY K+IIMTDADVDG+HI +L
Sbjct: 355 EKAQEYKIYDNEEIKNMITAMGVTFGTEEDSKALNLTKLRYHKIIIMTDADVDGSHIRTL 414

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIE 613
           +LTFF++ M +LIEQ +L++  PPL+ + +G +  YA  +  +  I+ E    GK   + 
Sbjct: 415 ILTFFFRYMRELIEQGYLYVALPPLYIVKKGKEERYAWSDAERDAIIREIAPEGKEDSVG 474

Query: 614 ISRF 617
           I R+
Sbjct: 475 IQRY 478


>gi|6939926|dbj|BAA90681.1| DNA gyrase subunit B [Marinilabilia salmonicolor]
 gi|6939935|dbj|BAA90682.1| DNA gyrase subunit B [Marinilabilia salmonicolor biovar
           Agarovorans]
          Length = 477

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 175/483 (36%), Positives = 275/483 (56%), Gaps = 15/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALS  L   V R   I+ Q++S+G PLS +E+     +  
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSISLKAEVHRDGKIYRQEYSKGKPLSSIEEVG-TTDIN 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT ITF+PD  IF +   +  + L    +  ++L+  ++      +E+ ++  + + E F
Sbjct: 60  GTWITFKPDDSIFNET-EYKYSVLANRMRELSFLNAGLEIVLIDKREVDDEGNV-KSERF 117

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTI 322
           Y   GL  +++    NR  +  +  +  TEK       V+ AI +    N  I SY N I
Sbjct: 118 YSDEGLLEFVKFIDVNREHLIDQPISISTEKNDVP---VDIAIVYNTSFNENIYSYVNNI 174

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH +G R  LTR +K +A+ +    K    I  DD       ++SV + EP+F 
Sbjct: 175 NTIEGGTHLTGFRRGLTRTLKNWADKSGLLSKLKFDISGDDFREGLTAVISVKVAEPQFE 234

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +    V+ A+    ++YL +NP +A  ++  VI  +  R   RK RE+ +
Sbjct: 235 GQTKTKLGNSEVSLAVDQAVSTMLNNYLEENPKDAKAIVNKVILAATARHAARKARELVQ 294

Query: 441 KTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           + + +    LPGKLADCS+     +E+F+VEGDSAGG+AKQ R+R  QA+LPLRGKILNV
Sbjct: 295 RKSVLTGGGLPGKLADCSEKDPAQSEIFLVEGDSAGGTAKQGRSRRFQAILPLRGKILNV 354

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASL 554
             A   ++  + +I ++  ALG    ++        E LRY K++IMTDADVDG HI +L
Sbjct: 355 EKALQHRVFESDEIKNIFTALGVNIGTEDDSKALNTEKLRYHKIVIMTDADVDGRHINTL 414

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           ++TFF++ M +LI+  +L++ +PPL+ + +G    Y   +  +++ +E+F    +  + I
Sbjct: 415 IMTFFFRYMKELIKDGYLYIAAPPLYFLKKGKNEQYCWTDAQRREFVEKFADGKEDSVHI 474

Query: 615 SRF 617
            R+
Sbjct: 475 QRY 477


>gi|239735461|dbj|BAH70497.1| gyrase B subunit [Candidatus Amoebophilus asiaticus]
          Length = 477

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 181/483 (37%), Positives = 277/483 (57%), Gaps = 16/483 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
             TY++SGGLHGVG+S VNALS  L  TV R   I+ Q++++G PL P+++       RG
Sbjct: 1   KGTYKVSGGLHGVGVSCVNALSIHLQATVYRDGKIYQQEYAKGAPLYPVKEVGTTT-LRG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I F+PD  IF     ++ + +       AYL+  +    +  +E  ++     +E F+
Sbjct: 60  TTIHFQPDDSIFTTTT-YNYSTIAARLGELAYLNAGLTIELTDLREQDQEG-NFLQETFH 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
             GGL  ++      R  +  +    + EK   +   V+ A+++       + SY N I 
Sbjct: 118 SEGGLAEFVAYLDNAREKLIPQPIYMEGEK---YDVPVQVALSYNTGFTENVVSYVNNIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTH +G R ALTR +K YAE +    K  + I+ DD       ++SV + EP+F G
Sbjct: 175 TIEGGTHVAGFRRALTRTLKSYAEKSNLLEKAKVEIVGDDFREGLTAVISVKVSEPQFEG 234

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NR 440
           QTKTKL + +    V++ + +   +YL ++P EA  ++  VI  ++ R   RK RE+  R
Sbjct: 235 QTKTKLGNAEVVGAVDSCVSETLQNYLEEHPQEAKIIVSKVILAAQARHAARKAREMVQR 294

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K  +    LPGKLADCS +     EL++VEGDSAGG+AKQ R+R  QA+LPLRGKILNV 
Sbjct: 295 KNVLTGGGLPGKLADCSDSDPAACELYLVEGDSAGGTAKQGRDRRFQAILPLRGKILNVE 354

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLL 555
            A   +I +N+Q+ +++ ALG    ++        E LRY KVIIMTDADVDG+HI +L+
Sbjct: 355 KAQEHRIYDNEQLRNMIMALGITFGTEEDAKAVNLEKLRYHKVIIMTDADVDGSHIRTLI 414

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEI 614
           LTFFY+ +  L+E+  L++  PPL+ + +G+++ Y   E+ +   +++F   GK   + I
Sbjct: 415 LTFFYRYLKVLLERGFLYIALPPLYLVKRGSETRYCWTEQDRIAAVKDFSPDGKTESVNI 474

Query: 615 SRF 617
            R+
Sbjct: 475 QRY 477


>gi|194339061|gb|ACF49446.1| GyrB [Amycolatopsis balhimycina]
          Length = 463

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 174/466 (37%), Positives = 262/466 (56%), Gaps = 19/466 (4%)

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           HHL  EV+DN++DE +AG+A  +EV+L  +G + VVD+GRGIPV+ HPK  NK T+E++L
Sbjct: 1   HHLVQEVVDNSVDEAMAGHATKVEVTLLADGGVRVVDDGRGIPVDMHPK-ENKPTIEVVL 59

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFD+ +Y +SGGLHGVGISVVNALS  L   V      + Q ++  IP  PLE
Sbjct: 60  TQLHAGGKFDSDSYAVSGGLHGVGISVVNALSTRLLAEVKYGGRSWRQLYTDQIP-GPLE 118

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
                    GT +TF  D  IF     ++   + +  Q  A+L+  +      ++   E+
Sbjct: 119 DLGPATE-TGTTMTFWADDSIFET-TTYNFETISRRLQEMAFLNKGLTLSLRDERVADEE 176

Query: 255 YGIP--------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
                       +++ + +PGGL+ +++    ++  I   + +   +  G     VE A+
Sbjct: 177 TEADAEGKVARVKEKVYCYPGGLEDFVKHINGSKDPIHPSVISFDAKGVG---LEVEVAM 233

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W     P + ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  DD+ 
Sbjct: 234 QWNNGFTPSVYTFANTINTHEGGTHEEGFRAALTRVVNTYARDKKLLKEKDTNLTGDDVR 293

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                I+S+ + EP+F GQTKTKL + +A+  V+    +    +  +NP EA  ++   I
Sbjct: 294 EGLAAIVSIKLGEPQFEGQTKTKLGNSEAKTFVQQQSNEWLADWFERNPTEAKTIINKSI 353

Query: 424 ERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
             ++ R+  RK R+ V RK A+    LPGKL DC        EL+IVEGDSAGGSAK+ R
Sbjct: 354 SSAQARMAARKARDLVRRKGALDIGGLPGKLKDCRSTKPEECELYIVEGDSAGGSAKEGR 413

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528
           +   QA+LP+RGKI+NV  A  +++  N ++  L+ ALG     ++
Sbjct: 414 DSMYQAILPIRGKIINVEKARIDRVLKNTEVQSLITALGTGIHDEF 459


>gi|30580460|sp|Q9FAX2|GYRB_FLEJA RecName: Full=DNA gyrase subunit B
 gi|10039313|dbj|BAB13317.1| DNA gyrase B subunit [Flexibacter japonensis]
          Length = 481

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 182/484 (37%), Positives = 276/484 (57%), Gaps = 13/484 (2%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D +TY++SGGLHGVG+S VNALS  LHVTV R+  IF Q++ RG+P   + +        
Sbjct: 1   DKNTYKVSGGLHGVGVSCVNALSTVLHVTVHREGKIFEQEYHRGVPQYAVREIG-ATTDT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT   F+PD +IF +   ++   L    +  AYL+ +++   + ++E  E+  +   E F
Sbjct: 60  GTTTHFKPDGEIFTET-SYNREILAGRLRELAYLNRKIRITLTDEREKDEQGNV-LSEPF 117

Query: 264 YFPGGLKTYLQTKLEN-RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           Y  GG+  ++Q    N R                     VE ++ + +     I SY N 
Sbjct: 118 YSEGGIMEFVQMLDRNGRRNSLLPAPIFIEAHDAPSNVAVEVSLQYNDSFSENIFSYVNN 177

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEF 379
           I T EGGTH +G R A+TR  K Y +  +   K  I +  DD       I+SV + EP+F
Sbjct: 178 INTIEGGTHVAGFRRAITRVFKTYGDRNKLFEKSKIEVTGDDFREGLSAIVSVKVPEPQF 237

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN 439
            GQTKTKL + D    V++A+ D  + YL ++P EA  ++  V+  ++ R   RK R++ 
Sbjct: 238 EGQTKTKLGNSDVMGVVDSAVADVLNAYLEEHPKEARTVINKVVLAAQAREAARKARQLV 297

Query: 440 RKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
           ++ + +    LPGKLADCS+N     EL++VEGDSAGG+AKQ RNR+ QA+LPLRGKILN
Sbjct: 298 QRKSVLTGSGLPGKLADCSENDPEKCELYLVEGDSAGGTAKQGRNRAFQAILPLRGKILN 357

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIAS 553
           V  A   KI  N++I ++  ALG    ++  ++      LRY K+IIMTDADVDG+HIA+
Sbjct: 358 VEKAMEHKIYENEEIKNIFTALGVTIGTEEDDKALNLSKLRYHKLIIMTDADVDGSHIAT 417

Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613
           L+LTF ++ M  L+EQ ++++  PPL+ + +G + +YA  EE ++  +       +  + 
Sbjct: 418 LILTFVFRYMKALVEQGYVYIAQPPLYLVKKGKEQIYAWTEEQRKAAVATLAGGKEDSVT 477

Query: 614 ISRF 617
           I R+
Sbjct: 478 IQRY 481


>gi|19909603|dbj|BAB86997.1| DNA gyrase subunit B [Halobacterium salinarum]
          Length = 443

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 171/469 (36%), Positives = 261/469 (55%), Gaps = 31/469 (6%)

Query: 72  KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLE 131
           + LHHL  EV+DN++DE +AGY + I+V+L  +G ++V D+GRGIPV  H ++ ++  +E
Sbjct: 1   RGLHHLVYEVVDNSIDEALAGYCDRIDVTLHDDGSVSVTDDGRGIPVATHEEY-DRPAVE 59

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           +ILT LHAGGKFD  +Y++SGGLHGVG+SVVNALS+ L V V+R    + ++F RG P++
Sbjct: 60  VILTVLHAGGKFDAKSYQVSGGLHGVGVSVVNALSERLAVEVSRDGARYREQFERGEPVT 119

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
            L+      +  GT I FRPD +IF     +D + L    +  A+L+  V+   +     
Sbjct: 120 DLQHVGD-SDDSGTLIRFRPDSEIFET-TAYDFSTLENRLRELAFLNSGVEITLTD---- 173

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA-WCE 310
                           G++ +++   E R+ +  ++   + E  G    +VE A+    +
Sbjct: 174 ----------------GIREFVEYLNETRNALHDDVIYFQGEDDGI---SVEIAMQASED 214

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN---KRAISIISDDLMISAV 367
                 ++ N I T EGGTH +G + ALTR +  YA            ++  DD+     
Sbjct: 215 VQSSTHAFANNINTREGGTHLTGFKTALTRTVNDYANDNNLLSELDGENLTGDDIREGLT 274

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            ++SV   +P+F GQTKTKL + + +  VE A+ D    Y  +NP  A  ++   +E ++
Sbjct: 275 AVISVKHPDPQFEGQTKTKLGNSEVRGIVERAVNDGLGTYFEENPATAKAVVRTAVEAAK 334

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   +K  E   RK+A+    LPGKLADC        ELF+VEGDSAGGSAKQ RN   
Sbjct: 335 ARKAAKKAEELTRRKSALGSTSLPGKLADCQSKAPEDAELFVVEGDSAGGSAKQGRNPGF 394

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           QA+LPL GKILNV     ++I  + ++  ++ ALG     ++  ++LRY
Sbjct: 395 QAILPLGGKILNVEKHRLDRILEHDELRHIITALGTGIGDEFDIDELRY 443


>gi|194339055|gb|ACF49443.1| GyrB [Amycolatopsis albidoflavus]
          Length = 461

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 174/466 (37%), Positives = 264/466 (56%), Gaps = 19/466 (4%)

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           HHL  EV+DN++DE +AGYA  +EV+L  +G + VVD+GRGIPV+ HPK   K TLE++L
Sbjct: 1   HHLVQEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVDMHPK-EKKPTLEVVL 59

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFD+ +Y +SGGLHGVG+SVVNALS +L   +      + Q+++  +P  PL+
Sbjct: 60  TILHAGGKFDSDSYAVSGGLHGVGVSVVNALSTKLLAEIKVGGRSWRQEYTNQVP-GPLQ 118

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
                 +  GT ITF  D  IF     ++   + +  Q  A+L+  +      ++   E+
Sbjct: 119 DLGPATD-TGTTITFWADGGIFET-TTYNFETISRRLQEMAFLNKGLTLSLRDERVSDEE 176

Query: 255 YGIP--------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
                       +++ + +PGGL+ +++    ++  I   + +   +  G     VE A+
Sbjct: 177 TEEDAAGKPARIKEKVYCYPGGLEDFVKHINGSKDPIHESVISFDAKGAG---LEVEVAM 233

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W     P + ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  DD+ 
Sbjct: 234 QWNTGFTPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDANLTGDDVR 293

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                I+S+ + EP+F GQTKTKL + +A+  V+    +    +  +NP EA  ++   I
Sbjct: 294 EGLAAIVSIKLSEPQFEGQTKTKLGNSEAKTFVQQQSNEWLGDWFERNPSEAKTIINKSI 353

Query: 424 ERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
             ++ RL  RK R+ V RK A+    LPGKL DC  N     EL+IVEGDSAGGSAK+ R
Sbjct: 354 SSAQARLAARKARDLVRRKGALEIGGLPGKLKDCRSNDPGECELYIVEGDSAGGSAKEGR 413

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528
           +   QA+LP+RGKI+NV  A  +++  N ++  L+ ALG      +
Sbjct: 414 DSMYQAILPIRGKIINVEKARIDRVLKNTEVQSLITALGTGIHDDF 459


>gi|311337321|gb|ADP89910.1| DNA gyrase subunit B [Amycolatopsis sp. S3.6]
          Length = 455

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 175/462 (37%), Positives = 262/462 (56%), Gaps = 19/462 (4%)

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           HHL  EV+DN++DE +AGYA  +EV+L  +G + VVD+GRGIPV+ HPK   K TLE++L
Sbjct: 1   HHLVQEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVDMHPK-EKKPTLEVVL 59

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFD+ +Y +SGGLHGVG+SVVNALS +L   +      + Q+++  +P  PLE
Sbjct: 60  TILHAGGKFDSDSYAVSGGLHGVGVSVVNALSTKLLAEIKVGGRSWRQEYTNQVP-GPLE 118

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
                    GT ITF  D  IF     ++   + +  Q  A+L+  +      ++   E+
Sbjct: 119 DLGPATE-TGTTITFWADDGIFET-TTYNFETISRRLQEMAFLNKGLTLSLRDERVADEE 176

Query: 255 YGIP--------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
                       +++ + +PGGL+ +++    ++  I   + +   +  G     VE A+
Sbjct: 177 TEEDAAGKPARIKEKVYCYPGGLEDFVKHINGSKDPIHESVISFDAKGAG---LEVEVAM 233

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W     P + ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  DD+ 
Sbjct: 234 QWNTGFTPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDANLTGDDVR 293

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                I+S+ + EP+F GQTKTKL + +A+  V+    +    +  +NP EA  ++   I
Sbjct: 294 EGLAAIVSIKLSEPQFEGQTKTKLGNSEAKTFVQQQSNEWLGDWFERNPSEAKTIINKSI 353

Query: 424 ERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
             ++ RL  RK R+ V RK A+    LPGKL DC  N     EL+IVEGDSAGGSAK+ R
Sbjct: 354 SSAQARLAARKARDLVRRKGALEIGGLPGKLKDCRSNDPGECELYIVEGDSAGGSAKEGR 413

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           +   QA+LP+RGKI+NV  A  +++  N ++  L+ ALG   
Sbjct: 414 DSMYQAILPIRGKIINVEKARIDRVLKNTEVQSLITALGTGI 455


>gi|13516987|dbj|BAB40376.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC01539]
          Length = 478

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 180/484 (37%), Positives = 272/484 (56%), Gaps = 16/484 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  TY++SGGLHGVG+S VNALS +L  TV R   I  Q+F  GIP  P ++     ++R
Sbjct: 1   DKDTYKVSGGLHGVGVSCVNALSTDLKATVYRNGVITEQEFKIGIPQYPAKQVG-TTDRR 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT I F+PD  IF     +    +    +  ++L+  ++   +  +E  E  G  + +EF
Sbjct: 60  GTTIHFKPDASIFA-ITEYKYETIANRLREMSFLNAGIRIFLTDLRE-TEDDGSVKSDEF 117

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTI 322
           Y  GGL  ++Q    +R  I     +  TEK G     V+ A+ +     E   SY NTI
Sbjct: 118 YSEGGLVEFVQYLDVSREKIIDTPISIDTEKNGVP---VQVAMNYNSSYSENVVSYVNTI 174

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGG+H SG R ALTR +K YA+ +    K  + +  DD       ++SV + EP+F 
Sbjct: 175 NTYEGGSHVSGFRRALTRTLKSYADKSGMLDKLKMEVSGDDFREGLTAVISVKVAEPQFE 234

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + D    V++A+ +    +L ++P EA  ++  VI  ++ R   RK RE+ +
Sbjct: 235 GQTKTKLGNSDVVGAVDSAVSEALQIWLEEHPKEAKIIVGKVILAAQARHAARKAREMVQ 294

Query: 441 KTAIRKLRLPGKL-ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +          ADC+ +     EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV
Sbjct: 295 RKNVLGGGGLPGKLADCANSDPTVCELYLVEGDSAGGSAKQGRDRDFQAILPLKGKILNV 354

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL-----RYEKVIIMTDADVDGAHIASL 554
             A   KI +N++I +++ ALG +  +   +++L     RY K+IIMTDAD+DG+HI +L
Sbjct: 355 EKAHEHKIYDNEEIKNILTALGVKIGTVNDDKELDLSSLRYHKIIIMTDADIDGSHIRTL 414

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIE 613
           +LT F++ M  LIE  ++++  PPL+ + +G    Y   EE ++ +  E  K GK   + 
Sbjct: 415 ILTLFFRYMRTLIEYGYVYIALPPLYLLKRGKDERYCWTEEERKILTAEMAKDGKEDSVA 474

Query: 614 ISRF 617
           I R+
Sbjct: 475 IQRY 478


>gi|330979122|gb|EGH78031.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 476

 Score =  320 bits (820), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 163/490 (33%), Positives = 261/490 (53%), Gaps = 23/490 (4%)

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
           +   GT + F PDPK F     F  +RL  + ++KA L   +   +             E
Sbjct: 4   KRNTGTSVYFAPDPKYFDTP-KFSVSRLKHVLKAKAVLCPGLLVSFEDK-------SSGE 55

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITS 317
           K E+++  GL++YLQ  +     +  E F G        +  V+WA+ W  E  +    S
Sbjct: 56  KVEWHYEDGLRSYLQDSVTEFLRLPDEPFCGSFTGN---KEAVDWALLWLPEGGDSVQES 112

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIRE 376
           Y N I T +GGTH +GLR  L   ++++ E      R + +  +D+      +LS+ ++E
Sbjct: 113 YVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQE 172

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F+GQTK +L S +A   V   ++D F  +L  +     +L +  I  +  RL+    +
Sbjct: 173 PQFSGQTKERLSSREAAAFVSGVVKDAFSLWLNTHSELGLQLADLAINNAGRRLK--ASK 230

Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
           +V RK   +   LPGKLADC+      +ELF+VEGDSAGGSAKQAR++  QA+LPLRGKI
Sbjct: 231 KVERKRITQGPALPGKLADCAGQDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKI 290

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556
           LN       ++  +Q++ ++  A+G    +      LRY K+ I+ DAD DG HIA+LL 
Sbjct: 291 LNTWEVDGGEVLASQEVHNIAVAIGVDPGAADI-SQLRYGKICILADADSDGLHIATLLC 349

Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEIS 615
             F Q    L++  H+++  PPL+RI  G +  YA DE  +  IL+    +  +GK +++
Sbjct: 350 ALFVQHFRPLVDAGHVYVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVT 409

Query: 616 RFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFI 674
           RFKGLGEM   QL+ET MD N R L+++ ++        T + ++ L+  K A +R  ++
Sbjct: 410 RFKGLGEMNPPQLRETTMDPNTRRLVQLTLDD----FAATSEMMDMLLAKKRAGDRKSWL 465

Query: 675 QERASFIDDV 684
           + + +  + +
Sbjct: 466 ESKGNLAEVL 475


>gi|155371498|ref|YP_001427032.1| hypothetical protein ATCV1_Z551L [Acanthocystis turfacea Chlorella
           virus 1]
 gi|155124818|gb|ABT16685.1| hypothetical protein ATCV1_Z551L [Acanthocystis turfacea Chlorella
           virus 1]
          Length = 1058

 Score =  320 bits (820), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 153/674 (22%), Positives = 247/674 (36%), Gaps = 90/674 (13%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTD---------------------EKALHHLFSEVIDN 84
           AS    L   + V  RP  Y+G                          A   +F E++ N
Sbjct: 2   ASRYIKLSQRDHVLQRPDTYVGSVAKEAREEYVYTGDAIVKKSVSYSPAFLKIFDEILTN 61

Query: 85  AMDEVIAG-YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143
           + D    G     ++V++D +  +T+ ++G  IPVE H         E+I   L  G  F
Sbjct: 62  SADCFNRGAPMTTLKVTIDADH-VTIYNDGCSIPVEKHE--EGCYVPELIFGHLLTGENF 118

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D++      G +G G  + N  S +  V +      + Q +S  +  +   K  K     
Sbjct: 119 DDAQERTGAGRNGYGSKLTNIFSKKFDVEIYDGTRKYLQTWSDNMTNASKPKVTKSSKPG 178

Query: 204 GTRITFRPDPKIFGDK--AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
               TF PD + FG         + L++     A +  +VK      +            
Sbjct: 179 SITTTFYPDFERFGMDSIDEDTRSVLVRRVYDMAAVLTKVKIFLDGKR------------ 226

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
                 G K Y +                 TE K        W I  C  +   +     
Sbjct: 227 --LDVKGAKDYFEMY---------------TEAKPVFESVDGWDIGVCPSDEFRSVSFVN 269

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +  GGTH       +   + K       K+ +++    +       ++  +  P F+ 
Sbjct: 270 ASSTRGGTHV----DLIANAVAKAVAEAALKKKVTVKPAVVKNKLFIFVNARVVNPSFSS 325

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK  L S      V+ +    F    V      + +L+ VI  +  R    + + + + 
Sbjct: 326 QTKDILTSK----NVKCSPSAAFLKKAV------SAVLDDVIAETNVRESLVEMKNLKKT 375

Query: 442 TAIRKLR--LPGKLADCSQ---NIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLR 493
              +K+R     KL D +      +    L + EGDSA   A        R    + PLR
Sbjct: 376 DGAKKVRLTGIKKLTDAAWAGTKHSGMCTLILTEGDSAATLATAGLAVVGRDRYGIFPLR 435

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIA 552
           GK+LNV  A    I NN +I  + Q LG R    Y++   LRY  VIIM D DVDG+HIA
Sbjct: 436 GKLLNVRDASVSSITNNAEITAIKQILGLRNGVNYKDASSLRYGSVIIMADQDVDGSHIA 495

Query: 553 SLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK 611
            L+L FF+ +   L+E    L     P+    +GTK V  +     ++            
Sbjct: 496 GLVLNFFHAQFPSLLEIPGFLKRFVTPIVVAKKGTKMVEFYSIPDFEEWKA--ATSDVST 553

Query: 612 IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERF 671
            +   +KGLG   A+  K    +     L++  +    N+ +    S NK   ++ADER 
Sbjct: 554 WKTKYYKGLGTSDANDAKRYFNNLKA--LVK-TLTWSDNAAESIDKSFNK---SRADERK 607

Query: 672 KFIQ--ERASFIDD 683
            ++   E  + +D 
Sbjct: 608 TWLLDFEPGNQLDQ 621


>gi|194339083|gb|ACF49457.1| GyrB [Amycolatopsis lurida]
          Length = 460

 Score =  320 bits (819), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 174/465 (37%), Positives = 264/465 (56%), Gaps = 19/465 (4%)

Query: 76  HLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILT 135
           HL  EV+DN++DE +AGYA  +EV+L  +G + VVD+GRGIPV+ HPK   K TLE++LT
Sbjct: 1   HLVQEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVDMHPK-EMKPTLEVVLT 59

Query: 136 TLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK 195
            LHAGGKFD+ +Y +SGGLHGVG+SVVNALS +L   V R    + Q ++  IP   LE 
Sbjct: 60  VLHAGGKFDSDSYAVSGGLHGVGVSVVNALSTKLIAEVKRGGHSWRQVYTDQIP-GELED 118

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
                +  GT ITF  D  IF     ++   + +  Q  A+L+  +      ++   E+ 
Sbjct: 119 LGPAED-TGTTITFWADGDIFET-TTYNFETISRRLQEMAFLNKGLTLSLRDERVADEET 176

Query: 256 GIP--------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307
                      +++ + +PGGL+ +++    ++  I + + + + +  G     VE A+ 
Sbjct: 177 EADASGQAARVKEKTYCYPGGLEDFVKHINGSKDPIHASVISFEAKGTG---LEVEVAMQ 233

Query: 308 WCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMI 364
           W     P + ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  DD+  
Sbjct: 234 WNNGFTPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDANLSGDDVRE 293

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
               I+S+ + EP+F GQTKTKL + +A+  V+    +    +  +NP EA  ++   I 
Sbjct: 294 GLAAIVSIKLSEPQFEGQTKTKLGNSEAKTFVQQTSNEWLADWFERNPTEAKTIINKSIS 353

Query: 425 RSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483
            ++ R+  RK R+ V RK A+    LPGKL DC        EL+IVEGDSAGGSAK+ R+
Sbjct: 354 SAQARMAARKARDLVRRKGALEIGGLPGKLKDCRSTNPSECELYIVEGDSAGGSAKEGRD 413

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528
              QA+LP+RGKI+NV  A  +++  N ++  L+ ALG     ++
Sbjct: 414 SMYQAILPIRGKIINVEKARIDRVLKNTEVQSLITALGTGIHEEF 458


>gi|13517031|dbj|BAB40398.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04467]
 gi|13517041|dbj|BAB40403.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04472]
          Length = 474

 Score =  320 bits (819), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 178/483 (36%), Positives = 265/483 (54%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALS+ L  TV R+  I+ Q++SRG    P++   +     
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSNHLKATVYREGKIWEQEYSRGKAQYPVKSIGET-ELS 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF PD  IF     +    L    +  AYL+  +    +  +   EK      E F
Sbjct: 60  GTVVTFIPDDTIFTQTTEYSYETLSNRMRELAYLNKGITIVITDKRNKDEKG-EFISETF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTI 322
           +   GLK +++     R  + + + + + EK G     VE A+ +     E    Y N I
Sbjct: 119 HSQEGLKEFIKFLDATREPLINTVISMEGEKNGIP---VEVAMIYNTGFSENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLSGFRRGLTSTLKKYADSSGLLDKLKFEISGDDFREGLTAIVSVKVSEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +    V  A+ +    YL ++P +A +++E V   ++ R    K RE+ +
Sbjct: 236 GQTKTKLGNREVTSAVSQAVSEMLTDYLEEHPDDAKQIVEKVKLAAQARHAAAKAREMVQ 295

Query: 441 KTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +   +    LPGKL+DCS       E+F+VEGDSAGG+AK  R+R+ QA+LPLRGKILNV
Sbjct: 296 RKNPMGGGGLPGKLSDCSDQDPENCEIFLVEGDSAGGTAKMGRDRNFQAILPLRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASL 554
             A   K+  N++I ++  ALG    ++        E LRY KV+IM DADVDG+HI +L
Sbjct: 356 EKAMQHKVFENEEIKNIYTALGVTIGTEEDSKALNLEKLRYHKVVIMCDADVDGSHIETL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +LIE  H+++ +PPL+ + +G K  YA +++ + +I+E           I
Sbjct: 416 ILTFFFRYMRELIESGHVYIATPPLYLVKKGAKKRYAWNDKERDEIVESMGGQAG----I 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|194339105|gb|ACF49468.1| GyrB [Amycolatopsis rubida]
          Length = 450

 Score =  319 bits (818), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 173/457 (37%), Positives = 260/457 (56%), Gaps = 19/457 (4%)

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           HHL  EV+DN++DE +AGYA  +EV+L  +G + VVD+GRGIPV+ HPK   K TLE++L
Sbjct: 1   HHLVQEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVDMHPK-EKKPTLEVVL 59

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFD+ +Y +SGGLHGVG+SVVNALS +L   +      + Q+++  +P  PLE
Sbjct: 60  TILHAGGKFDSDSYAVSGGLHGVGVSVVNALSTKLLAEIKVGGRSWRQEYTNQVP-GPLE 118

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
                 +  GT ITF  D  IF     ++   + +  Q  A+L+  +      ++   E+
Sbjct: 119 DLGPASD-TGTTITFWADGSIFET-TTYNFETISRRLQEMAFLNKGLTLSLRDERVADEE 176

Query: 255 YGIP--------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
                       ++  + +PGGL+ +++    ++  I   + +   +  G     VE A+
Sbjct: 177 TEEDAAGKQARVKEVVYCYPGGLEDFVKHINGSKDPIHESVISFDAKGSG---LEVEVAM 233

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W     P + ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  DD+ 
Sbjct: 234 QWNTGFTPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDANLTGDDVR 293

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                I+S+ + EP+F GQTKTKL + +A+  V+    +    +  +NP EA  ++   I
Sbjct: 294 EGLAAIVSIKLSEPQFEGQTKTKLGNSEAKTFVQQQSNEWLGDWFERNPSEAKTIINKSI 353

Query: 424 ERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
             ++ RL  RK R+ V RK A+    LPGKL DC  N     EL+IVEGDSAGGSAK+ R
Sbjct: 354 SSAQARLAARKARDLVRRKGALEIGGLPGKLKDCRSNDPGECELYIVEGDSAGGSAKEGR 413

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
           +   QA+LP+RGKI+NV  A  +++  N ++  L+ A
Sbjct: 414 DSMYQAILPIRGKIINVEKARIDRVLKNTEVQSLITA 450


>gi|6946703|dbj|BAA90674.1| DNA gyrase subunit B [Chryseobacterium indologenes]
          Length = 476

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 174/483 (36%), Positives = 279/483 (57%), Gaps = 16/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALS+E+  TV R   I+ Q +S+G   + +E+       +
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSNEMVTTVYRDGNIYQQIYSKGKAQTQVEEIGHSEK-K 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+  F+PD  IF +   ++   L    +  +YL+  +    + ++E  E       E F
Sbjct: 60  GTKQFFQPDDTIFTELV-YNYDTLASRLRELSYLNKGITITLTDEREKLEDG-SFRSEVF 117

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTI 322
           +  GGLK ++     NR  I   +   + E+       VE A+ +     E    Y N I
Sbjct: 118 HSEGGLKEFVAYIDGNRESIMEHVIFMEGERDDIP---VEVAMRYNTSFNENLHSYVNNI 174

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH +G R ALTR +KKYA+      K  + I  DD       ++SV + EP+F 
Sbjct: 175 NTHEGGTHLAGFRRALTRTLKKYADELGLPAKEKVEITGDDFREGLTAVVSVKVMEPQFE 234

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +    V+  + +   ++L +NP EA  +++ V+  ++ R   +K RE+ +
Sbjct: 235 GQTKTKLGNSEVSGAVDKIVGEMLTNFLEENPNEAKLIVQKVVLAAKARQAAKKAREMVQ 294

Query: 441 KTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           + + +    LPGKL+DCS      +E+F+VEGDSAGG+AKQ R+R  QA+LPLRGKILNV
Sbjct: 295 RKSPMGGSGLPGKLSDCSSKDPAESEIFLVEGDSAGGTAKQGRDRHFQAILPLRGKILNV 354

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASL 554
             +   K+ +N++I ++  ALG    ++          LRY K++IMTDAD+DG+HI++L
Sbjct: 355 EKSMLHKVYDNEEIRNIYTALGVSVGTEEDSKALNMAKLRYHKIVIMTDADIDGSHISTL 414

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +LIE  ++++  PPL+ + +G K VYA++E+ +++   +    G+G +E+
Sbjct: 415 ILTFFFRYMKELIENGYIYIAQPPLYLLKKGNKKVYAYNEKEREEFTLDMSPDGRG-VEV 473

Query: 615 SRF 617
            R+
Sbjct: 474 QRY 476


>gi|163784002|ref|ZP_02178964.1| gyrase B [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880724|gb|EDP74266.1| gyrase B [Hydrogenivirga sp. 128-5-R1-1]
          Length = 414

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 154/421 (36%), Positives = 230/421 (54%), Gaps = 17/421 (4%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y A SI ++EGLE VR+RP MYIG   E+ LHHL  E++DNA+DE +AG+A  I V L  
Sbjct: 7   YSAESIDVVEGLEHVRIRPAMYIGDVGERGLHHLIWELVDNAVDEAMAGFAKNIFVILHE 66

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G  T+ D+GRGIPV+ HPK      +E++ T L AGGKF    YE SGGLHGVG SVVN
Sbjct: 67  DGSATIEDDGRGIPVDIHPK-TGLPAVEMVFTKLGAGGKFSKKAYEYSGGLHGVGASVVN 125

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS  L V + R   I+  +F +G  + PL    +    RGT++TF+PD +IF +   F 
Sbjct: 126 ALSSWLVVEIYRDGKIYRMEFEKGKTIKPLTVVGETHK-RGTKVTFKPDDEIF-EITKFK 183

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              + K  +  A+L+  V+     +++  +         F +  G+K +++   + +  +
Sbjct: 184 YDTVSKRLRELAFLNPGVRFFAEDERKDLKDE-------FLYHEGIKDFVRVLNQAKDPL 236

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
            +EI     +K    R  VE A  + +     I S+ N + T +GGTH +G R ALT+ +
Sbjct: 237 FNEIIYINDKKD---RVIVEVAFQYTKSYNEVIESFVNNVKTVDGGTHVTGFRSALTKAM 293

Query: 343 KKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
            K     +  + +      +DL      ++SV + EP+F GQTK KL + + +  VE+ +
Sbjct: 294 NKTLSGMRLPKELKSGIKGEDLREGLTAVVSVKVPEPQFEGQTKGKLGNQEVKNIVESVV 353

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQN 459
            D    Y  +N   A K+ E  IE +  R   RK +EV+R+ + +    LPGKLADCS+ 
Sbjct: 354 SDYLMDYFDKNKDIAVKIAEKAIEAAVAREAARKAKEVSRRKSFLEDTSLPGKLADCSEK 413

Query: 460 I 460
            
Sbjct: 414 D 414


>gi|58761287|gb|AAW82358.1| DNA gyrase subunit B [Dehalococcoides sp. KB-1/PCE]
 gi|58761289|gb|AAW82359.1| DNA gyrase subunit B [Dehalococcoides sp. KB-1/VC]
          Length = 464

 Score =  319 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 177/465 (38%), Positives = 263/465 (56%), Gaps = 17/465 (3%)

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133
           LHHL  E++ N++DE +AG  + I+V +  +G ++V DNGRGIPV+ H      S LE +
Sbjct: 13  LHHLVYEIVYNSVDEAMAGVCDRIKVIMFKDGSVSVEDNGRGIPVDIHS-TTKISALETV 71

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           +T LHAG KF   TY++SGGLHGVG SVVNALS+   V V R   I+ Q + RG P +PL
Sbjct: 72  MTVLHAGAKFGGKTYQVSGGLHGVGASVVNALSEWTTVKVRRNGKIYQQSYLRGKPSTPL 131

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           E+   V    GT   F  D +IF     +D   L    +  AYL+  ++     +K   E
Sbjct: 132 EEVG-VSEGSGTTTIFMADSQIFST-TEYDFETLTDRLREIAYLNKGLEVYIYDEKSDQE 189

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP 313
           +        +YF GG+  +++    NR +   +      +   T    +E AI + +   
Sbjct: 190 RT-------YYFEGGITGFVRHLNRNREVRHRQPIYITKKSDSTI---LEVAIQYNDGYS 239

Query: 314 E-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGIL 370
           +   ++ N + T +GGTH +G R ALTR    YA  ++  +    +++ DD+    V I+
Sbjct: 240 DSTLTFANCVNTVDGGTHLTGFRSALTRAFNDYAHKSKFLKDTDPNLMGDDVREGIVAIV 299

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV + EP+F GQTK KL +++ +  VE+A+ +    YL ++P +  ++LE  I  ++ R 
Sbjct: 300 SVKLPEPQFEGQTKGKLGNIEIKSFVESAVAEQLSLYLEEHPDDTKRILEKCITAAKARE 359

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK R+ + RK+A+    LPGKLADCS+  A   ELF+VEGDSAGGSAKQ RNR  QA+
Sbjct: 360 AARKARDLIIRKSALDTGTLPGKLADCSERDASLCELFLVEGDSAGGSAKQGRNRRFQAI 419

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
           LPLRGKILNV  A  +K+  +++I  ++ AL     + +    LR
Sbjct: 420 LPLRGKILNVEKASPDKMLAHEEIRAIITALAAGIDNDFDPAKLR 464


>gi|194339095|gb|ACF49463.1| GyrB [Amycolatopsis orientalis]
          Length = 463

 Score =  319 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 174/470 (37%), Positives = 264/470 (56%), Gaps = 19/470 (4%)

Query: 77  LFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTT 136
           L  EV+DN++DE +AG+A  +EV+L  +G + VVD+GRGIPV+ HPK   K TLE++LT 
Sbjct: 1   LVQEVVDNSVDEAMAGHATKVEVTLLADGGVRVVDDGRGIPVDMHPK-EKKPTLEVVLTV 59

Query: 137 LHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK 196
           LHAGGKFD+ +Y +SGGLHGVG+SVVNALS +L   V      + Q ++  IP   LE  
Sbjct: 60  LHAGGKFDSDSYAVSGGLHGVGVSVVNALSTKLIAEVKYGGRSWRQVYTDQIP-GELEDL 118

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
               +  GT ITF  D  IF     ++   + +  Q  A+L+  +      ++   E+  
Sbjct: 119 GPAED-TGTTITFWADGGIFET-TTYNFETISRRLQEMAFLNKGLTLSLRDERVADEETE 176

Query: 257 IP--------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
                     +++ + +PGGL+ +++    ++  I S + + + +  G     VE A+ W
Sbjct: 177 EDASGQAARVKEKTYCYPGGLEDFVKHINGSKDPIHSSVISFEAKGTG---LEVEVAMQW 233

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
                P + ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  DD+   
Sbjct: 234 NNGFTPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDANLTGDDVREG 293

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              I+S+ + EP+F GQTKTKL + +A+  V+    +    +  +NP E+  ++   I  
Sbjct: 294 LAAIVSIKLSEPQFEGQTKTKLGNSEAKTFVQQTSNEWLADWFERNPAESKTIINKSISS 353

Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           +  R+  RK R+ V RK A+    LPGKL DC        EL+IVEGDSAGGSAK+ R+ 
Sbjct: 354 AHARMAARKARDLVRRKGALEIGGLPGKLKDCRSTNPSECELYIVEGDSAGGSAKEGRDS 413

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
             QA+LP+RGKI+NV  A  +++  N ++  L+ ALG     ++  E LR
Sbjct: 414 MYQAILPIRGKIINVEKARIDRVLKNTEVQSLITALGTGIHDEFDLEKLR 463


>gi|308450488|ref|XP_003088314.1| hypothetical protein CRE_15839 [Caenorhabditis remanei]
 gi|308248035|gb|EFO91987.1| hypothetical protein CRE_15839 [Caenorhabditis remanei]
          Length = 875

 Score =  319 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 143/391 (36%), Positives = 215/391 (54%), Gaps = 16/391 (4%)

Query: 302 VEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359
           ++W  A+ E    + +Y NTI T EGGTHE G R ALT  + +YA       ++  ++  
Sbjct: 1   MQWTTAYTES---VHTYANTINTHEGGTHEEGFRGALTTLVNRYAREKNILREKDDNLSG 57

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD+      ++SV + EP+F GQTKTKL + +A+  V+  + D    +  +NP  A  ++
Sbjct: 58  DDVREGLTAVISVKLGEPQFEGQTKTKLGNTEAKAFVQKVVGDQLGDWFERNPGPAKDII 117

Query: 420 EWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
              I+ +  RL  RK RE  R+  +     +PGKL+DC+      +E+FIVEGDSAGGSA
Sbjct: 118 RKAIQAATARLAARKARETARRKGLLESGGMPGKLSDCTSKDPTISEIFIVEGDSAGGSA 177

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538
           K  RN   QA+LPLRGKILNV  A  ++  NN ++  ++ A G     ++  E  RY K+
Sbjct: 178 KTGRNPHTQAILPLRGKILNVEKARLDRALNNTEVQAMITAFGAGIGEEFDPEKARYHKI 237

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHK 597
           ++M DADVDG HI +LLLT  ++ M  LI+  +++L  PPL+RI     +  Y   +  +
Sbjct: 238 VLMADADVDGQHITTLLLTLLFRYMRPLIDLGYVYLAQPPLYRIKWANAEHEYVFSDAER 297

Query: 598 QKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
            + L    + G+  ++   + R+KGLGEM   +L +T M+   RTLL+V +         
Sbjct: 298 DERLTAGSQAGRRLVKESGVQRYKGLGEMNHEELWDTTMNPETRTLLQVTMED----AAT 353

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
             +    LMG   + R  FIQ+ A  ID V 
Sbjct: 354 ADEIFATLMGEDVEARRSFIQQNA--IDQVD 382


>gi|313768187|ref|YP_004061618.1| hypothetical protein BpV1_188c [Bathycoccus sp. RCC1105 virus BpV1]
 gi|312599794|gb|ADQ91815.1| hypothetical protein BpV1_188c [Bathycoccus sp. RCC1105 virus BpV1]
          Length = 1073

 Score =  319 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 127/671 (18%), Positives = 246/671 (36%), Gaps = 74/671 (11%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTD---------------------EKALHHLFSEVIDN 84
           + SI+ L  +E +  RP  Y+G                          AL  +F E++ N
Sbjct: 2   SESIQKLTHVEHILKRPDSYVGPVSRVAEPYWIYENDQFEKKTVVYSPALLKIFDEILVN 61

Query: 85  AMDEVIA--GYANLIEVSLDG-NGFLTVVDNGR--GIPVENHPKFPNKSTLEIILTTLHA 139
           A+D           + VS+D  +G +T+ +NG   GI V+ H K       E+    L  
Sbjct: 62  AIDRNSMYPKNVTSMSVSIDKISGEITIENNGPLGGIAVKMHEK-EGLWNPELTFGHLLT 120

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
              +D++   + GG +G G  + N  S +  V +                   ++     
Sbjct: 121 STNYDDTQKRVVGGRNGYGAKLTNVYSSKFSVKIKDGENKCIYTQEW---SDNMKTCGTP 177

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
           + K+ +  T         D   F  +++                    +K + +      
Sbjct: 178 KIKKYSNATSSVSITFVPDWKRFGMSKMDD------------SIYKIFEKRVYDANICTS 225

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYC 319
           +       G      T      + +                     IA  ++  E  S+ 
Sbjct: 226 QNCKVKFQGDALPKATFNTYAKMYTKSDEICTFTSD-----RWSVCIAPSDDGFEHVSFV 280

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEF 379
           N I T +GG+H   +   L  G+ +        + I +    +  +    +   +  P F
Sbjct: 281 NGICTTKGGSHVDHVSGILANGVIE-----DMAKKIKLRPQQVKNAFFVFVKATLVNPSF 335

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN 439
           + Q K++          +      F   +++  +++           +E  +    R+  
Sbjct: 336 SSQVKSECTLKPQDFGSKFEPPKTFIKNILKTSVQSELTALSKFREMKELKKTDGSRKSK 395

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKI 496
               I  +             +    L I EGDSA   A    +   R +  V PLRGK 
Sbjct: 396 ----ITGIPKLDDANKAGTTHSGKCTLIITEGDSAKTLAIAGLSVVGRDHYGVFPLRGKC 451

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLL 555
            NV  A  +++  N++  DL + LG +    Y    +LRY +++IMTDAD DG+HI  L+
Sbjct: 452 KNVRDASVKQLTENKEFNDLKKILGLQQGKVYTSLSELRYGRLMIMTDADNDGSHIKGLI 511

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615
           L   +     L++ K +  +  P+ + ++G+++   + +   +        +GK   +I 
Sbjct: 512 LNMIHYFWPSLLKLKFVVSMVTPIIKASKGSETKSFYTDSTFRHWY----GNGKAGWKIK 567

Query: 616 RFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI- 674
            +KGLG   +++ +E      K   L V+ + D +  +    + +K   TK+D R  ++ 
Sbjct: 568 YYKGLGTSTSAEAREYF---KKIKDLTVQFDTDNSMDESIVLAFDK---TKSDLRKTWLL 621

Query: 675 ---QERASFID 682
              +++AS ++
Sbjct: 622 ESTEKKASELE 632


>gi|225419993|ref|ZP_03762296.1| hypothetical protein CLOSTASPAR_06334 [Clostridium asparagiforme
           DSM 15981]
 gi|225041344|gb|EEG51590.1| hypothetical protein CLOSTASPAR_06334 [Clostridium asparagiforme
           DSM 15981]
          Length = 312

 Score =  319 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 139/313 (44%), Positives = 185/313 (59%), Gaps = 5/313 (1%)

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           +P+F GQTK KL S  A+  V++ +      +L Q+P  A  +    +   + +   +  
Sbjct: 1   DPQFEGQTKQKLGSSQARPAVDSLVYHRMILFLEQHPDAAKAICSKAMLARKAKDAAKSA 60

Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           R+   RKTA+  L LPGKLADCS       ELFIVEGDSAGGSAK AR R NQAVLPLRG
Sbjct: 61  RDLARRKTALSGLTLPGKLADCSGRNPDSCELFIVEGDSAGGSAKAARCRENQAVLPLRG 120

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           KILNV  A  +KI +N +I  ++ A G      +  E LRY K+I+MTDADVDGAHI +L
Sbjct: 121 KILNVEKAAMDKISSNAEIKAMISAFGTGILESFSLERLRYHKIILMTDADVDGAHITTL 180

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           LLTF ++ M +LI   H+FL  PPL+R+ +G K  YA+ +    +IL+E ++ G    +I
Sbjct: 181 LLTFLFRFMPELIRSGHIFLAQPPLYRVEKGRKLWYAYSDAQLSRILDENERDGT--YKI 238

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL--KDTQDSINKLMGTKADERFK 672
            R+KGLGEM A QL ET MD  +R LL+V      +S    DT  + + LMG   + R  
Sbjct: 239 QRYKGLGEMDAQQLWETTMDPERRVLLKVTTGGGADSDVLADTDRTFSLLMGNDVEPRRD 298

Query: 673 FIQERASFIDDVG 685
           FI   A  I  + 
Sbjct: 299 FILANADRISMLD 311


>gi|194339103|gb|ACF49467.1| GyrB [Amycolatopsis rifamycinica]
          Length = 460

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 174/465 (37%), Positives = 266/465 (57%), Gaps = 19/465 (4%)

Query: 76  HLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILT 135
           HL  EV+DN++DE +AGYA  +EV+L  +G + VVD+GRGIPV+ HPK   K TLE++LT
Sbjct: 1   HLVQEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVDMHPK-EQKPTLEVVLT 59

Query: 136 TLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK 195
            LHAGGKFD+ +Y +SGGLHGVG+SVVNALS +L   V      + Q+++  +P  PLE 
Sbjct: 60  VLHAGGKFDSDSYAVSGGLHGVGVSVVNALSTKLLAEVKYGGRSWRQEYTDQVP-GPLED 118

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
                ++ GT ITF  D  IF     ++   + +  Q  A+L+  +      ++   E+ 
Sbjct: 119 LGPA-DETGTTITFWADGNIFET-TTYNFETISRRLQEMAFLNKGLTLSLRDERVADEET 176

Query: 256 GIP--------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307
                      +++ + +PGGL+ +++    ++  I S + + + +  G     VE A+ 
Sbjct: 177 EADAEGKVARVKEKTYCYPGGLEDFVKHINGSKDPIHSSVISFEAKGTG---LEVEVAMQ 233

Query: 308 WCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMI 364
           W     P + ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  DD+  
Sbjct: 234 WNNGFTPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYARDKKLLKEKDANLTGDDVRE 293

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
               I+S+ + EP+F GQTKTKL + +A+  V+    +    +  +NP EA  ++   I 
Sbjct: 294 GLAAIVSIKLSEPQFEGQTKTKLGNSEAKTFVQQTSNEWLADWFERNPTEAKTIINKSIS 353

Query: 425 RSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483
            ++ R+  RK R+ V RK A+    LPGKL DC        EL+IVEGDSAGGSAK+ R+
Sbjct: 354 SAQARMAARKARDLVRRKGALDIGGLPGKLKDCRSTKPEECELYIVEGDSAGGSAKEGRD 413

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528
              QA+LP+RGKI+NV  A  +++  N ++  L+ ALG     ++
Sbjct: 414 SMYQAILPIRGKIINVEKARIDRVLKNTEVQSLITALGTGIHDEF 458


>gi|224007305|ref|XP_002292612.1| DNA topoisomerase [Thalassiosira pseudonana CCMP1335]
 gi|220971474|gb|EED89808.1| DNA topoisomerase [Thalassiosira pseudonana CCMP1335]
          Length = 1179

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 137/719 (19%), Positives = 251/719 (34%), Gaps = 98/719 (13%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----------------------EKAL 74
           ++  D Y          LE + +RP MYIG T+                         AL
Sbjct: 1   ETIEDTYSRK-----TPLEHILLRPSMYIGPTEHADPKSCSSTNSPWTMQRQELSYVPAL 55

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
             +F E++ NA D  +    +        + ++++ +NG+ IP++ H K  N    E++ 
Sbjct: 56  LKIFDEILVNASDNRLRHPGSCNHFPSSSDPYISITNNGKSIPIQIHRK-ENMYIPELLF 114

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN------TIFSQKFSRGI 188
             L  G  F++    ++GG HG G  + N  S +  V +   +        + Q +   +
Sbjct: 115 GHLLTGSNFNDDQKRLTGGRHGYGAKLTNVFSKQFVVEIGDGHSSKGKIKTYKQVWEDNM 174

Query: 189 PLSP--------LEKKEKVRNKRGTRITFRPDPKIF------GDKAGFDAARLLKMTQSK 234
            +           +  +   N   TRI+F PD                +   + +     
Sbjct: 175 SVCHEAEVVSRDKKDADGKGNLDYTRISFIPDLARLTGDRKTEMLPEEEYQLMKRRVVDI 234

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           A  SG   T     +EI                G + Y     +  S  +        + 
Sbjct: 235 AGCSGGKLTVTLNGEEI-------------SVSGFEDYANLYRQPESSATPLPPMVYHKL 281

Query: 295 KGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA 354
                  V  +     E+    S+ N + T  GGTH   L   +++ I  +      ++ 
Sbjct: 282 NSRWEVAVGLSETKSLES---ISFVNGMNTSRGGTHVDALARQISQYIADHINNKMARQL 338

Query: 355 ISIIS--------DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
            ++ S          +       ++  I  P F  Q K  L S          L + F  
Sbjct: 339 DNLQSGQPISVSVRMVRRHLFLCVNCLIENPSFDSQMKECLTSNPDNFGSHFELSNSFLR 398

Query: 407 YLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT-AIRKLRLPGKLADCSQNIAHGTE 465
            LV  P    ++L   +   +  + R  + +  R+  +I KL              +   
Sbjct: 399 KLVG-PGIVEEVLRMAMGAQQVNMARLLKEQTKRQVLSIPKLEDANLAGSTDIGTENPCT 457

Query: 466 LFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           L + EGDSA   A        R +  V PLRGK +NV +   +++  N ++  +   LG 
Sbjct: 458 LILTEGDSAKALAVAGLEVVGRDHYGVFPLRGKFMNVRNVTVKQLATNAELKAMCAILGL 517

Query: 523 RTRSQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE---QKHLFLI 575
           +    Y        LRY  V++MTD D DG+HI  L++  F      L++   +  + + 
Sbjct: 518 QFEKSYDTAKERQELRYGHVMLMTDQDADGSHIKGLIMNMFRFFWPALLKPPSRPFMSMF 577

Query: 576 SPPLF---RITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKET 631
             PL    +  +   S+            E  +   +  K  +  +KGLG    ++ K+ 
Sbjct: 578 ITPLLKATKKGKKKDSISFFSVAEYNSWRESLEDEDEISKWTVKYYKGLGTSTPTEAKDY 637

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI-----QERASFIDDVG 685
            +    R     +   + N  +    +  K    +A++R  +I     ++ A  +D+  
Sbjct: 638 FLSF-VRHYRPFKWQSEKNDGERIDMAFEK---DRANDRKDWILTEYDEKSAVTVDERD 692


>gi|149004061|ref|ZP_01828867.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP14-BS69]
 gi|147757962|gb|EDK64970.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP14-BS69]
          Length = 415

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 131/377 (34%), Positives = 208/377 (55%), Gaps = 21/377 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F   G P++ L+K     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKVGTAPKSKTGTKVTFMPDATIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +     A+L   V    +  +         E  EF++  G++ ++    E+
Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338
           + +++      + E  G     VE A+ + +   +   S+ N + T +GGTHE+GL+ A+
Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394
           T+ +  YA  T    ++  ++   D       +LS+ +     +F GQTK KL S  A+ 
Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354

Query: 395 TVENALRDPFDHYLVQN 411
            V+  + D    +L++N
Sbjct: 355 VVDGIVADKLTFFLMEN 371


>gi|13517017|dbj|BAB40391.1| DNA gyrase B subunit [marine CFB-group bacterium MBIC04453]
          Length = 474

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 179/483 (37%), Positives = 270/483 (55%), Gaps = 18/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALSD L  TV R+  I+ Q++ RG  L P++   +  +  
Sbjct: 1   DKDSYKVSGGLHGVGVSCVNALSDHLKATVHREGKIWEQEYERGKTLYPVKSVGET-DIT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF PD  IF     ++   L    +  AYL+  V    +  +   +K      E F
Sbjct: 60  GTIVTFVPDKSIFTLTTEYNYDTLANRMRELAYLNKGVTITLTDKRNKDDKG-EFVSETF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTI 322
           +   GLK +++   E R  +   + + + EK GT    VE A+ +     E    Y N I
Sbjct: 119 FSNEGLKEFIKFLDETREPLIQSVISMEGEKNGTP---VEVAMIYNTGFSENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R  LT  +KKYA+ +    K    +  DD       I+SV + EP+F 
Sbjct: 176 NTHEGGTHLSGFRRGLTSTLKKYADSSGMLDKLKFEVSGDDFREGLTAIVSVKVAEPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +    V  A+ +   +YL ++P +A  +++ VI  ++ R    K RE+ +
Sbjct: 236 GQTKTKLGNREVTSAVSQAVSEMLTNYLEEHPDDAKSVVQKVILAAQARHAAAKAREMVQ 295

Query: 441 KTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +   +    LPGKL+DC +      E+F+VEGDSAGG+AKQ R+R+ QA LP RGKILNV
Sbjct: 296 RKNPMSVGGLPGKLSDCFEQDPTKCEVFLVEGDSAGGTAKQGRDRNFQAFLPFRGKILNV 355

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASL 554
             A   K+   ++I ++  ALG    ++        E LRY K++IM DADVDG+HI +L
Sbjct: 356 EKAMQHKVFEIEEIKNIYTALGVTIGTEEDSKALNLEKLRYHKLVIMCDADVDGSHIETL 415

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           +LTFF++ M +LIE  H+++ +PPL+ + +G+K  YA +++ + +I+E      KG   I
Sbjct: 416 ILTFFFRYMRELIEGGHVYIATPPLYLVKKGSKRRYAWNDQERDEIVESM----KGGACI 471

Query: 615 SRF 617
            R+
Sbjct: 472 QRY 474


>gi|218680313|ref|ZP_03528210.1| DNA gyrase subunit B [Rhizobium etli CIAT 894]
          Length = 421

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 144/404 (35%), Positives = 223/404 (55%), Gaps = 14/404 (3%)

Query: 53  EGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVD 111
           +GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+A+++ V+L+ +G +TV D
Sbjct: 1   KGLDAVRTRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHADIVTVTLNPDGSVTVTD 60

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171
           NGRGIP + H      S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALS  L +
Sbjct: 61  NGRGIPTDIHS-GEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSVWLKL 119

Query: 172 TVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMT 231
            + RQ  I    F+ G+  +PL+      ++ GT ++F P  + F     FD   L    
Sbjct: 120 KIRRQGKIHEMSFTHGVADAPLKVTGDAPDETGTEVSFMPSSETF-TMTEFDYGTLEHRL 178

Query: 232 QSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGK 291
           +  A+L+  V+   +  +    K     +EE  + GGL+ ++      +  +  +    +
Sbjct: 179 RELAFLNSGVRILLTDKRHSDIK-----QEELRYDGGLEAFVAYLDRAKKSLVDKPVAIR 233

Query: 292 TEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
            EK G    TVE A+ W +   E    + N I   +GGTH +G R ALTR +  YA+ + 
Sbjct: 234 GEKDGI---TVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRAALTRQVVSYADNSG 290

Query: 351 --NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
              K  +++  +D       +LSV + +P+F+ QTK KLVS + +  VE+ + +    + 
Sbjct: 291 ITKKEKVTLQGEDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVNEALSTWF 350

Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
            ++P EA  L+  V+E +  R   RK RE+ R+ A         
Sbjct: 351 EEHPSEAKILVGKVVEAAAAREAARKARELTRRRARSISPRCRA 394


>gi|58761281|gb|AAW82355.1| DNA gyrase subunit B [Dehalococcoides sp. BAV1]
          Length = 452

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 177/465 (38%), Positives = 263/465 (56%), Gaps = 17/465 (3%)

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133
           LHHL  E++ N++DE +AG  + I+V +  +G ++V DNGRGIPV+ H      S LE +
Sbjct: 1   LHHLVYEIVYNSVDEAMAGVCDRIKVIMFKDGSVSVEDNGRGIPVDIHS-TTKISALETV 59

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           +T LHAG KF   TY++SGGLHGVG SVVNALS+   V V R   I+ Q + RG P +PL
Sbjct: 60  MTVLHAGAKFGGKTYQVSGGLHGVGASVVNALSEWTTVKVRRNGKIYQQSYLRGKPSTPL 119

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           E+   V    GT   F  D +IF     +D   L    +  AYL+  ++     +K   E
Sbjct: 120 EEVG-VSEGSGTTTIFMADSQIFST-TEYDFETLTDRLREIAYLNKGLEVYIYDEKSDQE 177

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP 313
           +        +YF GG+  +++    NR +   +      +   T    +E AI + +   
Sbjct: 178 RT-------YYFEGGITGFVRHLNRNREVRHRQPIYITKKSDSTI---LEVAIQYNDGYS 227

Query: 314 E-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGIL 370
           +   ++ N + T +GGTH +G R ALTR    YA  ++  +    +++ DD+    V I+
Sbjct: 228 DSTLTFANCVNTVDGGTHLTGFRSALTRAFNDYAHKSKFLKDTDPNLMGDDVREGIVAIV 287

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV + EP+F GQTK KL +++ +  VE+A+ +    YL ++P +  ++LE  I  ++ R 
Sbjct: 288 SVKLPEPQFEGQTKGKLGNIEIKSFVESAVAEQLSLYLEEHPDDTKRILEKCITAAKARE 347

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK R+ + RK+A+    LPGKLADCS+  A   ELF+VEGDSAGGSAKQ RNR  QA+
Sbjct: 348 AARKARDLIIRKSALDTGTLPGKLADCSERDASLCELFLVEGDSAGGSAKQGRNRRFQAI 407

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
           LPLRGKILNV  A  +K+  +++I  ++ AL     + +    LR
Sbjct: 408 LPLRGKILNVEKASPDKMLAHEEIRAIITALAAGIDNDFDPAKLR 452


>gi|194339093|gb|ACF49462.1| GyrB [Amycolatopsis niigatensis]
          Length = 448

 Score =  317 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 172/454 (37%), Positives = 257/454 (56%), Gaps = 19/454 (4%)

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           HHL  EV+DN++DE +AGYA  +EV+L  +G + VVD+GRGIPV+ HPK   K TLE++L
Sbjct: 1   HHLVQEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVDMHPK-EKKPTLEVVL 59

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFD+ +Y +SGGLHGVG+SVVNALS +L   +      + Q++   +P  PLE
Sbjct: 60  TILHAGGKFDSDSYAVSGGLHGVGVSVVNALSTKLLAEIKVNGRSWRQEYLNQVP-GPLE 118

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
                 +  GT ITF  D  IF     ++   + +  Q  A+L+  +      ++   E+
Sbjct: 119 DLGPATD-TGTTITFWADDSIFET-TTYNFETISRRLQEMAFLNKGLTLSLRDERVADEE 176

Query: 255 YGIP--------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
                       ++  + +PGGL+ +++    ++  I   + +   +  G     VE A+
Sbjct: 177 TEEDAAGKQARVKEVVYCYPGGLEDFVKHINGSKDPIHESVISFDAKGAG---LEVEVAM 233

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W     P + ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  DD+ 
Sbjct: 234 QWNTGFTPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDANLTGDDVR 293

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                I+S+ + EP+F GQTKTKL + +A+  V+    +    +  +NP EA  ++   I
Sbjct: 294 EGLAAIVSIKLAEPQFEGQTKTKLGNSEAKTFVQQQSNEWLADWFERNPSEAKTIINKSI 353

Query: 424 ERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
             ++ RL  RK R+ V RK A+    LPGKL DC  N     EL+IVEGDSAGGSAK+ R
Sbjct: 354 SSAQARLAARKARDLVRRKGALEIGGLPGKLKDCRSNDPGECELYIVEGDSAGGSAKEGR 413

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +   QA+LP+RGKI+NV  A  +++  N ++  L
Sbjct: 414 DSMYQAILPIRGKIINVEKARIDRVLKNTEVQSL 447


>gi|330858527|ref|YP_004414902.1| putative DNA topoisomerase subunit DNA-dependent ATPase [Shigella
           phage Shfl2]
 gi|327397461|gb|AEA72963.1| putative DNA topoisomerase subunit DNA-dependent ATPase [Shigella
           phage Shfl2]
          Length = 605

 Score =  317 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 140/657 (21%), Positives = 231/657 (35%), Gaps = 80/657 (12%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTD-----------------EKALHHLFSEVIDNAMDE 88
            + I+IL  +E ++ R GMYIG +                     L  L  E+IDN++DE
Sbjct: 3   KNEIKILSDIEHIKKRSGMYIGSSANEMHERFLFGKWESVQYVPGLVKLIDEIIDNSVDE 62

Query: 89  VIA---GYANLIEVSLDGNGFLTVVDNGRGIPVENH--PKFPNKSTLEIILTTLHAGGKF 143
            I     +AN        N  +TV DNGRGIP      P            T   AGG F
Sbjct: 63  GIRTKFKFANK-INVNIKNNQVTVEDNGRGIPQAMVKTPTGEEIPGPVAAWTIPKAGGNF 121

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
            +    ++GG++GVG S+ N  S                + S G+     E        +
Sbjct: 122 GDDKERVTGGMNGVGSSLTNIFSVMFVGETGDGQNNIVVRCSNGMENKSWETIPG--KWK 179

Query: 204 GTRITFRPDPKIFGDKA--GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           GTR+TF PD   F             L   Q+ A +   ++  ++  K            
Sbjct: 180 GTRVTFIPDFMSFETNELSQVYLDITLDRLQTLAVVYPDIQFTFNGKKV----------- 228

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
                G  K Y +   E+  +   E  +               A+    +     +Y N 
Sbjct: 229 ----QGNFKKYARQYDEHAIVQEQENCS--------------IAVGRSPDGFRQLTYVNN 270

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVF-IREPEFA 380
           I T  GG H   +   +           + K  I +    +      ++ V  ++   F 
Sbjct: 271 IHTKNGGHHIDCVMDDICE---DLIPQIKRKFKIDVTKARVKECLTIVMFVRDMKNMRFD 327

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
            QTK +L S   +     +        + +  +    +L  +IE +  R    ++    +
Sbjct: 328 SQTKERLTSPFGEIR---SHIQLDAKKISRAILNNEAILMPIIEAALARKLAAEKAAETK 384

Query: 441 KTAIRKLRLPG-KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
                        +          T LF+ EGDSA G     R++      PLRGK+LN 
Sbjct: 385 AAKKASKAKVHKHIKANLCGKDADTTLFLTEGDSAIGYLIDVRDKELHGGYPLRGKVLNS 444

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
                  +  N+++ D+    G     +   E+L Y  + IMTDAD DG       L  F
Sbjct: 445 WGMSYADMLKNKELFDICAITGLVLGEKA--ENLNYHNIAIMTDADHDGLGSIYPSLLGF 502

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
           +    +L EQ  +  +  P+     G K  + +     +   +   KH      I   KG
Sbjct: 503 FSNWPELFEQGRIRFVKTPVIIAQVGKKQEWFYTVAEYESAKDALPKH-----SIRYIKG 557

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           LG +  S+ +E   +          +   +   ++ ++    LMG  AD R +++ +
Sbjct: 558 LGSLEKSEYREMIQNP---------VYDVVKLPENWKELFEMLMGDNADLRKEWMSQ 605


>gi|311337323|gb|ADP89911.1| DNA gyrase subunit B [Amycolatopsis sp. SE(8)3]
          Length = 463

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 175/470 (37%), Positives = 263/470 (55%), Gaps = 19/470 (4%)

Query: 77  LFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTT 136
           L  EV+DN++DE +AGYA  +EV+L  +G + VVD+GRGIPV+ HPK   K TLE++LT 
Sbjct: 1   LVQEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVDMHPK-EKKPTLEVVLTI 59

Query: 137 LHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK 196
           LHAGGKFD+ +Y +SGGLHGVG+SVVNALS +L   +      + Q+++  +P  PLE  
Sbjct: 60  LHAGGKFDSDSYAVSGGLHGVGVSVVNALSTKLLAEIKVGGRSWRQEYTNQVP-GPLEDL 118

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
                  GT ITF  D  IF     ++   + +  Q  A+L+  +      ++   E+  
Sbjct: 119 GPATE-TGTTITFWADDGIFET-TTYNFETISRRLQEMAFLNKGLTLSLRDERVADEETE 176

Query: 257 IP--------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
                     +++ + +PGGL+ +++    ++  I   + +   +  G     VE A+ W
Sbjct: 177 EDAAGKPARIKEKVYCYPGGLEDFVKHINGSKDPIHESVISFDAKGAG---LEVEVAMQW 233

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
                P + ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  DD+   
Sbjct: 234 NTGFTPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDANLTGDDVREG 293

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              I+S+ + EP+F GQTKTKL + +A+  V+    +    +  +NP EA  ++   I  
Sbjct: 294 LAAIVSIKLSEPQFEGQTKTKLGNSEAKTFVQQQSNEWLGDWFERNPSEAKTIINKSISS 353

Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           ++ RL  RK R+ V RK A+    LPGKL DC  N     EL+IVEGDSAGGSAK+ R+ 
Sbjct: 354 AQARLAARKARDLVRRKGALEIGGLPGKLKDCRSNDPGECELYIVEGDSAGGSAKEGRDS 413

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
             QA+LP+RGKI+NV  A  +++  N ++  L+ ALG      +    LR
Sbjct: 414 MYQAILPIRGKIINVEKARIDRVLKNTEVQSLITALGTGIHDDFDLSKLR 463


>gi|13358818|dbj|BAB33155.1| DNA gyrase B subunit [Flavobacterium ferrugineum]
          Length = 481

 Score =  317 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 185/484 (38%), Positives = 266/484 (54%), Gaps = 13/484 (2%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  TY++SGGLHGVG+S VNALS  LHVTV R+  +F Q++  G+P  P+    +  N  
Sbjct: 1   DKDTYKVSGGLHGVGVSCVNALSTHLHVTVQREGKVFEQEYRIGVPQYPVRVVGESEN-T 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GTR+ F PD  IF     ++   L    +  ++L+  V+   +  +E  E    P  + F
Sbjct: 60  GTRVQFWPDDTIFTSTV-YNKEILEGRLRELSFLNRGVRINLTDLREQEEDGQ-PYTKSF 117

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           +  GG+  +++    N    +        E         VE A+++       I SY N 
Sbjct: 118 FSEGGIVEFVEMLDTNAGRTTLIPKVISVEGHDNNTNVAVEVALSYNNSYAEHIYSYVNN 177

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEF 379
           I T EGGTH SG R ALTR  K Y +      K  + I  DD       I+SV + EP+F
Sbjct: 178 INTIEGGTHVSGFRRALTRVFKAYGDRNSLFEKAKVEIEGDDFREGLSAIISVKVPEPQF 237

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREV 438
            GQTKTKL + D    V++ +    + YL +NP EA  ++  VI         R+ +  V
Sbjct: 238 EGQTKTKLGNSDVMGVVDSTVSRVLEAYLEENPKEAKSIVAKVILAAQARAAARKARELV 297

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RKT +    LPGKLADCS   A   ELF+VEGDSAGG+AKQ R+RS QA+LPLRGKILN
Sbjct: 298 QRKTVLTGGGLPGKLADCSDRDAEKCELFLVEGDSAGGTAKQGRDRSFQAILPLRGKILN 357

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIAS 553
           V  A   KI  N++I ++  ALG    +    +      LRY K+IIMTDADVDG+HIA+
Sbjct: 358 VEKAMEHKIYENEEIRNMYTALGVTVGTPEDPKELNLTKLRYHKLIIMTDADVDGSHIAT 417

Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613
           L+LTF ++ M  ++EQ +++L  PPL+ + +G ++ YA +E  ++ ++E+     +  + 
Sbjct: 418 LILTFIFRYMKAMVEQGYVYLAQPPLYLVKKGKEAAYAFNETQRKALVEKLGGGKEDSVN 477

Query: 614 ISRF 617
           I R+
Sbjct: 478 IQRY 481


>gi|313623967|gb|EFR94068.1| DNA topoisomerase IV, B subunit [Listeria innocua FSL J1-023]
          Length = 366

 Score =  317 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 134/377 (35%), Positives = 202/377 (53%), Gaps = 20/377 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + Y+  SI++LEGLE VR RP MYIG TD + LHHL  E++DN++DE +AG+   I V+L
Sbjct: 4   NEYNDDSIQVLEGLEAVRKRPAMYIGSTDVRGLHHLVYEIVDNSVDETLAGFGKKIVVTL 63

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGVGIS 160
             +G ++V D GRG+PV  H     KST+E+ILT LHAGGKF     Y+ SGGLHGVG S
Sbjct: 64  HDDGSVSVSDEGRGMPVGMHK--TGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGVGSS 121

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ L VT+ R    + QKF  G       KK       GT I F+PDP IF    
Sbjct: 122 VVNALSEWLVVTINRDGATYQQKFKDGGKPDGTLKKIGKSKATGTTIRFKPDPAIFPT-T 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F+   L +  +  A+L   +      ++       +   E F+F  G+K +++   E +
Sbjct: 181 SFNYETLSERLRESAFLLKGMLIQLVDER-------VGMAESFHFEEGVKNFVEYINEGK 233

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
            ++     + + E        VE A  + +     I S+ N + T   G+HESG++ A+T
Sbjct: 234 DVLHPV-VSFEGENATI---EVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMT 289

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395
           R    YA       ++  ++   D+      +LS+ + E   +F GQTK KL + +A++ 
Sbjct: 290 RIFNDYARRVNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQA 349

Query: 396 VENALRDPFDHYLVQNP 412
           V+  + +   ++L +NP
Sbjct: 350 VDAVVAEHLAYFLAENP 366


>gi|194339107|gb|ACF49469.1| GyrB [Amycolatopsis saalfeldensis]
          Length = 455

 Score =  317 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 171/462 (37%), Positives = 258/462 (55%), Gaps = 19/462 (4%)

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           HHL  EV+DN++DE +AG+A  +EV+L  +G + VVD+GRGIPV+ HPK   K TLE++L
Sbjct: 1   HHLVQEVVDNSVDEAMAGHATRVEVTLLADGGVRVVDDGRGIPVDMHPK-EKKPTLEVVL 59

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFD+ +Y +SGGLHGVG+SVVNALS  L   +      + Q ++  I    LE
Sbjct: 60  TILHAGGKFDSDSYAVSGGLHGVGVSVVNALSTRLLAEIKVGGRSWRQLYTDQIA-GELE 118

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
                 +  GT ITF  D  IF     ++   + +  Q  A+L+  +      ++   E+
Sbjct: 119 DLGPAED-TGTTITFWADSGIFET-TTYNFETISRRLQEMAFLNKGLTLSLRDERVADEE 176

Query: 255 YGIP--------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
                       +++ + +PGGL+ +++    ++  I   + +   +  G     VE A+
Sbjct: 177 TEQDAQGKQARVKEKVYCYPGGLEDFVRHINASKDPIHESVISFDAKGPG---LEVEVAM 233

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W     P + ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  DD+ 
Sbjct: 234 QWNNGFTPSVYTFANTINTIEGGTHEEGFRAALTRVVNSYAREKKLLKEKDANLTGDDVR 293

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                I+S+ + EP+F GQTKTKL + +A+  V+    +    +  +NP EA  ++   I
Sbjct: 294 EGLAAIVSIKLSEPQFEGQTKTKLGNSEAKTFVQQQSNEWLADWFERNPSEAKTIITKSI 353

Query: 424 ERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
             ++ R+  RK R+ V RK A+    LPGKL DC        EL+IVEGDSAGGSAK+ R
Sbjct: 354 SSAQARMAARKARDLVRRKGALEIGGLPGKLKDCRSTNPGECELYIVEGDSAGGSAKEGR 413

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           +   QA+LP+RGKI+NV  A  +++  N ++  L+ ALG   
Sbjct: 414 DSMYQAILPIRGKIINVEKARIDRVLKNTEVQSLITALGTGI 455


>gi|229077281|ref|ZP_04209965.1| DNA gyrase subunit B [Bacillus cereus Rock4-2]
 gi|228706025|gb|EEL58329.1| DNA gyrase subunit B [Bacillus cereus Rock4-2]
          Length = 258

 Score =  317 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 115/247 (46%), Positives = 159/247 (64%), Gaps = 6/247 (2%)

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK+A+    LPGKLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+N
Sbjct: 17  RRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIIN 76

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  +KI +N ++  ++ A+G      +  E  RY KVIIMTDADVDGAHI +LLLTF
Sbjct: 77  VEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTF 136

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY+ M  +IE  ++++  PPLF+I QG K  YA++++  +KIL E     K    I R+K
Sbjct: 137 FYRYMRQIIECGYIYIAQPPLFKIQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYK 194

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           GLGEM  +QL ET MD   R+LL+V +   +    +  ++   LMG K + R  FIQE A
Sbjct: 195 GLGEMNPTQLWETTMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENA 250

Query: 679 SFIDDVG 685
            ++ ++ 
Sbjct: 251 KYVKNLD 257


>gi|161622384|ref|YP_001595132.1| gp39 topoisomerase II large subunit N-terminal region
           [Enterobacteria phage JS98]
 gi|160213690|gb|ABX11029.1| gp39 topoisomerase II large subunit N-terminal region
           [Enterobacteria phage JS98]
          Length = 605

 Score =  317 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 132/655 (20%), Positives = 229/655 (34%), Gaps = 79/655 (12%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTD-----------------EKALHHLFSEVIDNAMDE 88
            + I++L  +E ++ R GMYIG +                     L  L  E+IDN++DE
Sbjct: 3   KNEIKVLSDIEHIKKRSGMYIGSSANEAHGRFLFGNFTQVNYVPGLVKLIDEIIDNSVDE 62

Query: 89  VIA---GYANLIEVSLDGNGFLTVVDNGRGIPVENHPK--FPNKSTLEIILTTLHAGGKF 143
            I     +AN I+V +  N  ++V DNGRGIP                   T   AGG F
Sbjct: 63  AIRTNFKFANKIDVQI-KNNQVSVSDNGRGIPQAMVTDQNGEQIPGPVAAWTIPKAGGNF 121

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
            +     +GG++GVG S+ N  S       +      +   S G+         K    +
Sbjct: 122 GDDAERKTGGMNGVGSSLTNIFSVLFTGITSDGENEITVNCSNGMENKGWS--TKKSKGK 179

Query: 204 GTRITFRPDPKIFGDKA--GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           GT + F PD   F + +         L   Q+ A +   ++  ++  K            
Sbjct: 180 GTSVIFTPDFSHFEENSLSQIYLDITLDRLQTLAVIYPDIQFTFNGKKVDGN-------- 231

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
              F    K + +  +   +                    V  A     +     +Y N 
Sbjct: 232 ---FKKYAKQFGEDFVIQET------------------DNVSMAFTPSPDGFRQLTYVNN 270

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVF-IREPEFA 380
           I T  GG H   +   +   +     + +  + I +    +      ++ +  +    F 
Sbjct: 271 IHTKNGGHHVECVFDDICEHL--LPGIKKKYKGIEVTKARVKECLTMVMFIRDMSNMRFD 328

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
            QTK +L S   +              +    ++   L+  ++E +  R    ++    +
Sbjct: 329 SQTKERLTSPFGEIR---NHIQIDAKKIATAILKVDGLIMPIVEAALARKLAAEKAAETK 385

Query: 441 KTAIRKLRLPG-KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
                        +          T LF+ EGDSA G   + RN+  Q   PLRGK++N 
Sbjct: 386 AAKKALKAKVHKHIKANMYGKDADTTLFLTEGDSAMGPFIEVRNKDLQGGYPLRGKVMNT 445

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
               +  I  N+++ D+    G         +   Y  + IMTDADVDG       L  F
Sbjct: 446 WGMTAADIMKNKELFDICAITGLVIGEPA--DKTNYRNIAIMTDADVDGTGSIYPSLLAF 503

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
           + +  +L EQ  +     P+     G +  + +D     K  +   KH      I   KG
Sbjct: 504 FSQWPELFEQGRIRFCKTPVIIAQVGKEQEWFYDVPSYTKAKDSLPKH-----SIRYIKG 558

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
           LG +  ++          R +++      +   +D +D    L+G     R  ++
Sbjct: 559 LGSLEKAEY---------RRMIQDPKFDVVQLPEDWKDQFEMLLGNDPQLRKAWM 604


>gi|194339109|gb|ACF49470.1| GyrB [Amycolatopsis sacchari]
          Length = 466

 Score =  317 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 171/473 (36%), Positives = 263/473 (55%), Gaps = 19/473 (4%)

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133
           LHHL  EV+DN++DE +AGYA  +EV+L  +G + V D+GRGIPV+ HPK  ++ T+E++
Sbjct: 1   LHHLIQEVVDNSVDEAMAGYATKVEVTLLADGGVRVADDGRGIPVDMHPK-EHRPTIEVV 59

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
            T LHAGGKFD+ +Y +SGGLHGVGISVVNALS  L V V R   ++ Q +    P   +
Sbjct: 60  HTVLHAGGKFDSDSYAVSGGLHGVGISVVNALSTALDVEVRRDGRLWKQHYDHAKPGELI 119

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           +         GT  TF  DP IF     ++A  + +  Q  A+L+  +      ++   +
Sbjct: 120 DA--GPAEDTGTTTTFWADPDIFET-TTYNAETVARRLQEMAFLNKGLYITLRDERVTDD 176

Query: 254 KYGIP--------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
           +             +  +++PGGL+ +++    ++  I   + +   + +G     VE A
Sbjct: 177 ETETDVDGQQARVRERVYHYPGGLEDFVKHINGSKDPIHPSVISFDAKGEG---LEVEVA 233

Query: 306 IAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDL 362
           + W     P + ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  +D+
Sbjct: 234 MQWNNSYTPSVHTFANTINTHEGGTHEEGFRAALTRVVNAYARDKKLLKEKDENLSGEDV 293

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
                 I+S+ + EP+F GQTKTKL + +A+  V++   +    +  +NP EA  ++   
Sbjct: 294 REGLAAIVSIKLAEPQFEGQTKTKLGNSEAKSFVQSKTNEWLADWFERNPGEAKTIINKA 353

Query: 423 IERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
           I  ++ R+  R+ R+ V RK A+    LPGKL DC        EL+IVEGDSAGGSAK+ 
Sbjct: 354 IGSAQARMAARRARDLVRRKGAMDIGGLPGKLKDCQSTNPEECELYIVEGDSAGGSAKEG 413

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
           R    QA+LP+RGKI+NV  A  +++  N ++  L+ ALG      +    LR
Sbjct: 414 RESRFQAILPIRGKIINVEKARIDRVLKNNEVQSLITALGTGIHDDFDISKLR 466


>gi|314121567|ref|YP_004063686.1| DNA topoisomerase II large subunit [Enterobacteria phage
           vB_EcoM-VR7]
 gi|313151324|gb|ADR32380.1| DNA topoisomerase II large subunit [Enterobacteria phage
           vB_EcoM-VR7]
          Length = 609

 Score =  317 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 136/661 (20%), Positives = 233/661 (35%), Gaps = 82/661 (12%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTD-----------------EKALHHLFSEVIDNAMDE 88
            + IR+L  +E ++ R GMYIG +                     +  L  E+IDN++DE
Sbjct: 3   KNEIRVLSDIEHIKKRSGMYIGSSSNEAHERFLFGEYKSVSYVPGIVKLIDEIIDNSVDE 62

Query: 89  VIA---GYANLIEVSLDGNGFLTVVDNGRGIPVEN--HPKFPNKSTLEIILTTLHAGGKF 143
            I     +AN I+V +  +  ++V DNGRGIP                   T   AGG F
Sbjct: 63  AIRTSFKFANKIDVQI-KDNQISVSDNGRGIPQAMVVDQSGEQIPGPVAAWTIPKAGGNF 121

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
            +     +GG++GVG S+ N  S       A      +   S G+         K    +
Sbjct: 122 GDDAERKTGGMNGVGSSLTNIFSVLFTGITADGANEITVNCSNGMENKGWS--TKKSKGK 179

Query: 204 GTRITFRPDPKIFGDKA--GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           GT + F PD   F + +         L   Q+ A +   ++  ++  K            
Sbjct: 180 GTTVIFIPDFSHFEENSLSQIYLDITLDRLQTLAVVYPDIQFTFNGKKV----------- 228

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
                G  K + +                 TE       TV  A     +     +Y N 
Sbjct: 229 ----DGNFKKFSKQ--------------FGTEVVIQETDTVSMAFTTSPDGFRQLTYVNN 270

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVF-IREPEFA 380
           I T  GG H   +   +   ++    + +  + I +    +      ++ +  +    F 
Sbjct: 271 IHTKNGGHHVECVMDDICEHLQ--PAIKRKYKGIEVTKARVKECLTMLMFIRDMSNMRFD 328

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
            QTK +L S   +              + Q  ++   L+  ++E +  R    ++    +
Sbjct: 329 SQTKERLTSPAGEIR---NHIQIDAKKIAQAILKNESLIMPIVEAALARKLAAEKAAETK 385

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTE--LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
                      K    ++      E  LF+ EGDSA G   + R+R  Q   PLRGK  N
Sbjct: 386 ANKKASKAKVQKHIKANEWGNDKLETTLFLTEGDSATGPFIKVRDRELQGAYPLRGKFKN 445

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
                + ++  N +  D+    G         E++ Y  + IMTDADVDG       L  
Sbjct: 446 TWGLKAVEVMKNAEAFDVCAITGLTIGQPA--ENMNYRNIAIMTDADVDGVGSIYPSLLA 503

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           F+    +L  +  +  +  P+       K  + +     ++  ++  KH      I   K
Sbjct: 504 FFSNWPELFHEGRIRFVKTPVIIAQLKDKQEWFYSLPDYEEAKDKLPKH-----TIRYIK 558

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           GLG +  S+ K        R LL       +    + ++    L G +   R  ++   A
Sbjct: 559 GLGSLEDSEYK--------RVLLEPVFE-VVQLPDNWKELFEMLFGKEPKLRKDWM--NA 607

Query: 679 S 679
           +
Sbjct: 608 T 608


>gi|194339065|gb|ACF49448.1| GyrB [Amycolatopsis decaplanina]
          Length = 456

 Score =  317 bits (811), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 171/463 (36%), Positives = 262/463 (56%), Gaps = 19/463 (4%)

Query: 77  LFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTT 136
           L  EV+DN++DE +AG+A  +EV+L  +G + VVD+GRGIPV+ HPK   K TLE++LT 
Sbjct: 1   LVQEVVDNSVDEAMAGFATKVEVTLLADGGVRVVDDGRGIPVDMHPK-EQKPTLEVVLTV 59

Query: 137 LHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK 196
           LHAGGKFD+ +Y +SGGLHGVG+SVVNALS +L   V R    + Q ++  +P   LE  
Sbjct: 60  LHAGGKFDSDSYAVSGGLHGVGVSVVNALSTKLIAEVKRGGHSWRQVYTDQVP-GELEDL 118

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
               +  GT ITF  D  IF     ++   + +  Q  A+L+  +      ++   E+  
Sbjct: 119 GPAED-TGTTITFWADGDIFET-TTYNFETISRRLQEMAFLNKGLTLSLRDERVADEETE 176

Query: 257 IP--------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
                     +++ + +PGGL+ +++    ++  I + + + + +  G     VE A+ W
Sbjct: 177 ADASGQAARVKEKTYCYPGGLEDFVKHINGSKDPIHASVISFEAKGTG---LEVEVAMQW 233

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
                P + ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  DD+   
Sbjct: 234 NNGFTPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDANLSGDDVREG 293

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              I+S+ + EP+F GQTKTKL + +A+  V+    +    +  +NP EA  ++   I  
Sbjct: 294 LAAIVSIKLSEPQFEGQTKTKLGNSEAKTFVQQTSNEWLADWFERNPTEAKTIINKSISS 353

Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           ++ R+  RK R+ V RK A+    LPGKL DC        EL+IVEGDSAGGSAK+ R+ 
Sbjct: 354 AQARMAARKARDLVRRKGALEIGGLPGKLKDCRSTNPSECELYIVEGDSAGGSAKEGRDS 413

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
             QA+LP+RGKI+NV  A  +++  N ++  L+ ALG     +
Sbjct: 414 MYQAILPIRGKIINVEKARIDRVLKNTEVQSLITALGTGIHEE 456


>gi|19909681|dbj|BAB87036.1| DNA gyrase subunit B [Thermotoga sp. KU11]
          Length = 444

 Score =  316 bits (810), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 180/452 (39%), Positives = 259/452 (57%), Gaps = 17/452 (3%)

Query: 80  EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139
           EV+DN++DE +AGY + I V+L  +G + V DNGRGIPV+ HP+   +S LE++ T LHA
Sbjct: 1   EVVDNSVDEALAGYCDWIRVTLHEDGSVEVEDNGRGIPVDIHPE-EGRSALEVVFTVLHA 59

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKF   +Y+ISGGLHGVG+SVVNALS+ L V V R   I+ Q++ RG P++P+E   + 
Sbjct: 60  GGKFSKDSYKISGGLHGVGVSVVNALSEWLEVRVHRDGKIYRQRYERGKPVTPVEVIGET 119

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            +K GT + F+PDP IF +   FD   L    +  A+L   +K  +       +K     
Sbjct: 120 -DKHGTIVRFKPDPLIFSE-TEFDPDVLEHRLREIAFLVPGLKIEFEDRINGEKKT---- 173

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----KKGTHRGTVEWAIAWCEEN-PE 314
              F F GG+  Y++     + +    I+  +TE    K G     VE A  + +    E
Sbjct: 174 ---FKFDGGIVEYVKYLNRGKKVFHDVIYMKRTEKVQTKNGEDEVIVEIAFQYTDSYSEE 230

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVF 373
           I S+ NTI T +GGTH +  +  LTR + +Y +     K   S   +D+      ++SV+
Sbjct: 231 IVSFANTIKTVDGGTHVTAFKTMLTRLMNEYGKKHGFLKGDDSFQGEDVREGLTAVVSVY 290

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           ++ PEF GQTK+KL + + +  +   +RD        NP     +L  ++   + R   R
Sbjct: 291 VKNPEFEGQTKSKLGNEEVKEAINRVMRDELKKIFDANPELVKTILSKIMSTKQAREAAR 350

Query: 434 KQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           + RE+  RK  ++   LPGKLADCS      TELFIVEGDSAGGSAKQAR+R  QAVLP+
Sbjct: 351 RAREMVRRKNVLQNTTLPGKLADCSSTDREKTELFIVEGDSAGGSAKQARDREFQAVLPI 410

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           RGKILNV  +  +K+  N+QI D++ A+G   
Sbjct: 411 RGKILNVEKSSLDKLLKNEQISDIIVAVGTGI 442


>gi|19909539|dbj|BAB86965.1| DNA gyrase subunit B [Caulobacter fusiformis]
          Length = 474

 Score =  316 bits (810), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 177/482 (36%), Positives = 270/482 (56%), Gaps = 21/482 (4%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
           D   LHH+  EV+DNA+DE +AG+A  +EV L+ +G  TV D+GRGIP + H +    S 
Sbjct: 3   DGSGLHHMVYEVVDNAIDEALAGWATRVEVILNADGSATVSDDGRGIPTDIH-EGEGVSA 61

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALSD L + + R       +F RG  
Sbjct: 62  AEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDYLLLKIHRNGKQHEMRFERGDA 121

Query: 190 LSPLEKKEKVRNK------RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           ++ L        +       GT +TF P  + F     FD   L    +  A+L+  V  
Sbjct: 122 VTSLAITGDSPKRDNGEPLTGTIVTFFPSLETF-SHINFDRKTLEHRLRELAFLNSGVTI 180

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
            +   ++       P +E  ++ GG++ +++   + ++ +       + +++      V+
Sbjct: 181 YFRDLRD-----AEPYEEIMHYEGGIEAFVRHLDKAKTPLVKTPMIIRGQREKVQ---VD 232

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISD 360
            A+ W +     +  + N I   +GGTH +  R ALTR +  Y E +    K  +S+  +
Sbjct: 233 LALWWNDSYHETMLCFTNNIPQRDGGTHLAAFRAALTRVVGNYIESSGMAKKEKVSVTGE 292

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D       +LSV + +P+F+ QTK KLVS + +  VE  +++    +  ++P+EA  L+ 
Sbjct: 293 DAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGLVQEGLATWFEEHPVEARILVG 352

Query: 421 WVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
            V+E +  R   RK RE   RK+A+    LPGKLADC +     +ELF+VEGDSAGGSAK
Sbjct: 353 KVVEAAAAREAARKARELTRRKSALDITNLPGKLADCQERDPAKSELFLVEGDSAGGSAK 412

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
           QARNR NQAVLPLRGKILNV  A  +++  + Q+  L+ ALG    R  +  E +RY ++
Sbjct: 413 QARNRENQAVLPLRGKILNVERARFDRMLGSDQVGTLITALGAGIGRDDFNIEKMRYHRI 472

Query: 539 II 540
           +I
Sbjct: 473 VI 474


>gi|19909683|dbj|BAB87037.1| DNA gyrase subunit B [Variovorax paradoxus]
          Length = 497

 Score =  316 bits (810), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 178/505 (35%), Positives = 267/505 (52%), Gaps = 45/505 (8%)

Query: 73  ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKST 129
            LHHL  EV+DN++DE +AG+ + I V++  +  ++V DNGRGIP          P +S 
Sbjct: 1   GLHHLVFEVVDNSIDEALAGHCDDIVVTIHTDNSISVTDNGRGIPTGVKMDDKHEPKRSA 60

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFS---- 185
            EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L + V R+  I   +FS    
Sbjct: 61  SEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSVMLRLVVRREGKIHELEFSRGFV 120

Query: 186 --------RGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
                    G+ +SP+    +  +KRGT + F PD +IF + A F    L K  +  ++L
Sbjct: 121 QNRLIETVNGVEVSPMRIIGET-DKRGTEVHFLPDTEIFKENADFHYEILSKRLRELSFL 179

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V+     ++   E         F   GG+K ++    + ++++   +F    EK   
Sbjct: 180 NNGVRIRLKDERSGKEDD-------FSGAGGVKGFVDFINKGKTVLHPNVFYAMGEKPAD 232

Query: 298 -------HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
                      VE A+ W      ++  + N I   +GGTH +GLR A+TR I KY E  
Sbjct: 233 TYGGIPGTHIGVEVAMQWNSGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEEN 292

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
           +   K  + +  DD+      +LSV + EP+F+ QTK KLVS + +  VE+ +      Y
Sbjct: 293 EFAKKAKVEVTGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVGRLLTDY 352

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTEL 466
           L + P +A  +   ++E +  R   RK RE+ R+   +  + LPGKLADC +      E+
Sbjct: 353 LQERPNDAKIICGKIVEAARAREAARKAREMTRRKGVLDGMGLPGKLADCQEKDPALCEV 412

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-- 524
           ++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  EK+  + +I+ ++ ALG     
Sbjct: 413 YLVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARYEKLLTSNEILTMITALGTGIGR 472

Query: 525 ---------RSQYREEDLRYEKVII 540
                       +    LRY ++II
Sbjct: 473 AGATSAGGGADDFNVAKLRYHRIII 497


>gi|194339079|gb|ACF49455.1| GyrB [Amycolatopsis keratiniphila subsp. keratiniphila]
          Length = 460

 Score =  316 bits (809), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 174/467 (37%), Positives = 264/467 (56%), Gaps = 19/467 (4%)

Query: 79  SEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLH 138
            EV+DN++DE +AGYA  +EV+L  +G + VVD+GRGIPV+ HPK   K TLE++LT LH
Sbjct: 1   QEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVDIHPK-EQKPTLEVVLTVLH 59

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+ +Y +SGGLHGVG+SVVNALS +L   V R    + Q ++  IP   LE    
Sbjct: 60  AGGKFDSDSYAVSGGLHGVGVSVVNALSTKLIAEVKRGGHSWRQVYTDQIP-GELEDLGP 118

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +  GT ITF  D  IF     ++   + +  Q  A+L+  +      ++   E+    
Sbjct: 119 AED-TGTTITFWADGDIFET-TTYNFETISRRLQEMAFLNKGLTLSLRDERVADEETEAD 176

Query: 259 --------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   +++ + +PGGL+ +++    ++  I + + + + +  G     VE A+ W  
Sbjct: 177 ASGQAARVKEKTYCYPGGLEDFVKHINGSKDPIHASVISFEAKGTG---LEVEVAMQWNN 233

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
              P + ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  DD+     
Sbjct: 234 GFTPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDANLSGDDVREGLA 293

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            I+S+ + EP+F GQTKTKL + +A+  V+    +    +  +NP EA  ++   I  ++
Sbjct: 294 AIVSIKLSEPQFEGQTKTKLGNSEAKTFVQQTSNEWLADWFERNPTEAKTIINKSISSAQ 353

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R+  RK R+ V RK A+    LPGKL DC        EL+IVEGDSAGGSAK+ R+   
Sbjct: 354 ARMAARKARDLVRRKGALEIGGLPGKLKDCRSTNPSECELYIVEGDSAGGSAKEGRDSMY 413

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           QA+LP+RGKI+NV  A  +++  N ++  L+ ALG     ++  E L
Sbjct: 414 QAILPIRGKIINVEKARIDRVLKNTEVQSLITALGTGIHEEFDIEKL 460


>gi|19909679|dbj|BAB87035.1| DNA gyrase subunit B [Thermotoga sp. KU10]
          Length = 446

 Score =  316 bits (809), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 179/456 (39%), Positives = 261/456 (57%), Gaps = 17/456 (3%)

Query: 80  EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139
           EV+DN++DE +AGY + I V+L  +G + V DNGRGIPV+ HP+   +S LE++ T LHA
Sbjct: 1   EVVDNSVDEALAGYCDWIRVTLHEDGSVEVEDNGRGIPVDIHPE-EGRSALEVVFTVLHA 59

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKF   +Y+ISGGLHGVG+SVVNALS+ L V V R   I+ Q++ RG P++P+E   + 
Sbjct: 60  GGKFSKDSYKISGGLHGVGVSVVNALSEWLEVRVHRDGKIYRQRYERGKPVTPVEVIGET 119

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            +K GT + F+PDP IF +   FD   L    +  A+L   +K  +       +K     
Sbjct: 120 -DKHGTIVRFKPDPLIFSE-TEFDPDVLEHRLREIAFLVPGLKIEFEDRINGEKKT---- 173

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----KKGTHRGTVEWAIAWCEEN-PE 314
              F F GG+  Y++     + +    I+  +TE    K G     VE A  + +    +
Sbjct: 174 ---FKFDGGIVEYVKYLNRGKKVFHDVIYMKRTEKVQTKNGEDEVIVEIAFQYTDSYSED 230

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVF 373
           I S+ NTI T +GGTH +  +  LTR + +Y +     K   S   +D+      ++SV+
Sbjct: 231 IVSFANTIKTVDGGTHVTAFKTMLTRLMNEYGKKHGFLKGDDSFQGEDVREGLTAVVSVY 290

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           ++ PEF GQTK+KL + + +  +   +RD        NP     +L  ++  ++ R   R
Sbjct: 291 VKNPEFEGQTKSKLGNEEVKEAINRVMRDELKKIFDANPELVKTILSKIMSTTQAREAAR 350

Query: 434 KQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           + RE+  RK  ++   LPGKLADCS      TELFIVEGDSAGGSAKQAR+R  QAVLP+
Sbjct: 351 RAREMVRRKNVLQNTTLPGKLADCSSTDREKTELFIVEGDSAGGSAKQARDREFQAVLPI 410

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528
           RGKILNV  +  +K+  N+QI D++ A+G      +
Sbjct: 411 RGKILNVEKSSLDKLLKNEQISDIIVAVGTGIGDDF 446


>gi|238695159|ref|YP_002922352.1| gp39 topoisomerase II, large subunit, N-terminal region
           [Enterobacteria phage JS10]
 gi|220029295|gb|ACL78229.1| gp39 topoisomerase II, large subunit, N-terminal region
           [Enterobacteria phage JS10]
          Length = 605

 Score =  316 bits (809), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 132/655 (20%), Positives = 229/655 (34%), Gaps = 79/655 (12%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTD-----------------EKALHHLFSEVIDNAMDE 88
            + I++L  +E ++ R GMYIG +                     L  L  E+IDN++DE
Sbjct: 3   KNEIKVLSDIEHIKKRSGMYIGSSANEAHGRFLFGNFTQVNYVPGLVKLIDEIIDNSVDE 62

Query: 89  VIA---GYANLIEVSLDGNGFLTVVDNGRGIPVENHPK--FPNKSTLEIILTTLHAGGKF 143
            I     +AN I+V +  N  ++V DNGRGIP                   T   AGG F
Sbjct: 63  AIRTNFKFANKIDVQI-KNNQVSVSDNGRGIPQAMVTDQNGEQIPGPVAAWTIPKAGGNF 121

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
            +     +GG++GVG S+ N  S       +      +   S G+         K    +
Sbjct: 122 GDDAERKTGGMNGVGSSLTNIFSVLFTGITSDGENEITVNCSNGMENKGWS--TKKSKGK 179

Query: 204 GTRITFRPDPKIFGDKA--GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           GT + F PD   F + +         L   Q+ A +   ++  ++  K            
Sbjct: 180 GTSVIFTPDFNHFEENSLSQIYLDITLDRLQTLAVIYPDIQFTFNGKKVDGN-------- 231

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
              F    K + +  +   +                    V  A     +     +Y N 
Sbjct: 232 ---FKKYAKQFGEDFVIQET------------------DNVSMAFTPSPDGFRQLTYVNN 270

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVF-IREPEFA 380
           I T  GG H   +   +   +     + +  + I +    +      ++ +  +    F 
Sbjct: 271 IHTKNGGHHVECVFDDICEHL--LPGIKKKYKGIEVTKARVKECLTMVMFIRDMSNMRFD 328

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
            QTK +L S   +              +    ++   L+  ++E +  R    ++    +
Sbjct: 329 SQTKERLTSPFGEIR---NHIQIDAKKIATAILKVDGLIMPIVEAALARKLAAEKAAETK 385

Query: 441 KTAIRKLRLPG-KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
                        +          T LF+ EGDSA G   + RN+  Q   PLRGK++N 
Sbjct: 386 AAKKALKAKVHKHIKANMYGKDADTTLFLTEGDSAMGPFIEVRNKDLQGGYPLRGKVMNT 445

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
               +  I  N+++ D+    G         +   Y  + IMTDADVDG       L  F
Sbjct: 446 WGMTAADIMKNKELFDICAITGLVIGEPA--DKTNYRNIAIMTDADVDGTGSIYPSLLAF 503

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
           + +  +L EQ  +     P+     G +  + +D     K  +   KH      I   KG
Sbjct: 504 FSQWPELFEQGRIRFCKTPVIIAQVGKEQEWFYDVPSYTKAKDSLPKH-----SIRYIKG 558

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
           LG +  ++          R +++      +   +D +D    L+G     R  ++
Sbjct: 559 LGSLEKAEY---------RRMIQDPKFDVVQLPEDWKDQFEMLLGNDPQLRKAWM 604


>gi|157953085|ref|YP_001497977.1| hypothetical protein NY2A_B781L [Paramecium bursaria Chlorella
           virus NY2A]
 gi|155123312|gb|ABT15180.1| hypothetical protein NY2A_B781L [Paramecium bursaria Chlorella
           virus NY2A]
          Length = 1061

 Score =  316 bits (809), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 153/673 (22%), Positives = 258/673 (38%), Gaps = 85/673 (12%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTDEK---------------------ALHHLFSEVIDN 84
           A+  + L   + V  RP  YIG T  +                     AL  +F E+I N
Sbjct: 2   ANRYQKLSQRDHVLARPDTYIGSTAPQTKNEWVYVNGKVIKKDVTYSSALLKIFDEIITN 61

Query: 85  AMDEVIAGYANLI-EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143
           + D         I ++ +D    ++V ++G  IP+E H         E+I   L AG  F
Sbjct: 62  SADCYNRDKRLTILKICIDET-SVSVFNDGCSIPIEKHD-VEKCYIPELIFGHLLAGENF 119

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D++      G +G+G    N  S    V +   N  + Q +   + +    K        
Sbjct: 120 DDTEQRTGAGRNGIGSKATNIFSKIFDVEICDGNKKYKQTWRDNMSVVSKPKVTTCSKNP 179

Query: 204 GTRITFRPDPKIF--GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
               TF PD + F          + + +     A + G+VK   +  +   +      ++
Sbjct: 180 YITTTFFPDFERFGVDTFDDDILSVMRRRVYDMAAVLGKVKVMLNGKRLEIKNT----ED 235

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
            F    G K+  +   E+                       +  +A  E+   ++     
Sbjct: 236 YFSLYIGSKSETKRAFEHTP------------------EEWDVGVACVEDFTPVSFV--N 275

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
            +   GGTH + +   + + + + A     K+ I +    +       ++  I  P F  
Sbjct: 276 SVVTRGGTHVNAVSDVVVKAVIEAAA----KKKIIVKPSTVKNRMFVFVNATIVNPTFDS 331

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK  L S +A+ T+  A                  LL+ VI+ +  R     Q+E+ + 
Sbjct: 332 QTKEILTSRNARVTLSEAFLKKAV----------GVLLDVVIQETNVRTSLVDQKELKKT 381

Query: 442 TAIRKLRL--PGKLADCSQ---NIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLR 493
              +K+R+    KL D +    N +    L + EGDSA   A    +   R    V PLR
Sbjct: 382 DGTKKIRVTGIPKLNDATWAGTNNSKMCTLILTEGDSAATLAIAGLSVVGRERYGVFPLR 441

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDADVDGAHIA 552
           GK+LNV  A    I  N++I  L Q LG +T   Y++   LRY  V+IMTDADVDG HI+
Sbjct: 442 GKLLNVRDASVASITKNEEITALKQILGLQTGKVYKDTSSLRYGHVMIMTDADVDGTHIS 501

Query: 553 SLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK 611
            L++ FF+    +L+E    L     P+    +G +          +  +   K     K
Sbjct: 502 GLVMNFFHSCFPNLLEIPGFLKKFITPIVVARKGKEVREFFSLPDFEDFV---KTQDMKK 558

Query: 612 IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERF 671
                FKGLG   ++  K+   +      L        +S +    S NK   ++A++R 
Sbjct: 559 WTTKYFKGLGTSSSADAKKYFSNLKS---LMKTFMWTSDSGELIDRSFNK---SRAEDRK 612

Query: 672 KFI--QERASFID 682
           +++   E  + +D
Sbjct: 613 EWMTAYEPGNQLD 625


>gi|299778959|ref|YP_003734153.1| gp39 topoisomerase II large subunit [Enterobacteria phage IME08]
 gi|298105688|gb|ADI55332.1| gp39 topoisomerase II large subunit [Enterobacteria phage IME08]
          Length = 605

 Score =  316 bits (809), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 133/655 (20%), Positives = 232/655 (35%), Gaps = 79/655 (12%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTD-----------------EKALHHLFSEVIDNAMDE 88
            + I++L  +E ++ R GMYIG +                     L  L  E+IDN++DE
Sbjct: 3   KNEIKVLSDIEHIKKRSGMYIGSSANEAHGRFLFGNFTQVNYVPGLVKLIDEIIDNSVDE 62

Query: 89  VIA---GYANLIEVSLDGNGFLTVVDNGRGIPVENHPK--FPNKSTLEIILTTLHAGGKF 143
            I     +AN I+V +  N  ++V DNGRGIP                   T   AGG F
Sbjct: 63  AIRTNFKFANKIDVQI-KNNQVSVSDNGRGIPQAMVTDQNGEQIPGPVAAWTIPKAGGNF 121

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
            +     +GG++GVG S+ N  S       +      +   S G+         K    +
Sbjct: 122 GDDAERKTGGMNGVGSSLTNIFSVLFTGITSDGENEITVNCSNGMENKGWS--TKKSKGK 179

Query: 204 GTRITFRPDPKIFGDKA--GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           GT + F PD   F + +         L   ++ A +   ++  ++  K            
Sbjct: 180 GTSVIFTPDFNHFEENSLSQIYLDITLDRLKTLAVIYPSIQFTFNGKKV----------- 228

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
                G  K Y     ++  +  ++               V  A     +     +Y N 
Sbjct: 229 ----DGNFKKYANQFGKDVVIQETD--------------NVSMAFTTSPDGFRHLTYVNN 270

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVF-IREPEFA 380
           I T  GG H   +   +   +     + +  + I +    +      ++ +  +    F 
Sbjct: 271 IHTKNGGHHVECVFDDICEHL--LPGIKKKYKGIEVSKARVKECLTMLMFIRDMSNMRFD 328

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
            QTK +L S   +              + Q  ++   L+  ++E +  R    ++    +
Sbjct: 329 SQTKERLTSPFGEIR---NHIQIDAKKISQYILKDEGLIMPIVEAALARKLAAEKAAETK 385

Query: 441 KTAIRKLRLPG-KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
                        +          T LF+ EGDSA G   + RN+  Q   PLRGK++N 
Sbjct: 386 AAKKASKAKVHKHIKANLYGKDADTTLFLTEGDSAMGPFIEVRNKDLQGGYPLRGKVMNT 445

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
               +  I  N+++ D+    G         E   Y  + IMTDADVDG       L  F
Sbjct: 446 WGMTATDIMKNKELFDICAITGLVIGEPA--EKTNYRNIAIMTDADVDGTGSIYPSLLAF 503

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
           + +  +L EQ  +     P+     G +  + +D     K  +   KH      I   KG
Sbjct: 504 FSQWPELFEQGRVRFCKTPVIIAQVGKEQEWFYDVPSYTKAKDSLPKH-----SIRYIKG 558

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
           LG +  ++          R +++      +   +D ++    L+G     R  ++
Sbjct: 559 LGSLEKAEY---------RRMIQDPKFDVVQLPEDWKEQFEMLLGNDPQLRKAWM 604


>gi|94990120|ref|YP_598220.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS10270]
 gi|94543628|gb|ABF33676.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS10270]
          Length = 408

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 154/409 (37%), Positives = 232/409 (56%), Gaps = 13/409 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +     YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I
Sbjct: 9   EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHI 68

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGV
Sbjct: 69  KVFIEADNSITVVDDGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS +L V V +   I  Q+F RG  ++ LE          T + F PDP+IF 
Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEIIGTTDVTG-TTVHFTPDPEIFT 186

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   FD + L K  Q  A+L+  +K   +  +   E     ++E F++ GG+ +Y++   
Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGME-----QEEHFHYEGGIGSYVEFLN 241

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           + + +I         E +G     VE A+ +       + S+ N I T EGGTHE G R 
Sbjct: 242 DKKDVIFETPIYTDGELEGI---AVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRA 298

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA+  +   +   ++  +D+      ++SV    P+F GQTKTKL + +  +
Sbjct: 299 ALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443
                  + F  +L++NP  A K++E  I  S+ R+  ++ REV RK +
Sbjct: 359 ITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKS 407


>gi|157953897|ref|YP_001498788.1| hypothetical protein AR158_C707L [Paramecium bursaria Chlorella
           virus AR158]
 gi|156068545|gb|ABU44252.1| hypothetical protein AR158_C707L [Paramecium bursaria Chlorella
           virus AR158]
          Length = 1062

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 153/673 (22%), Positives = 258/673 (38%), Gaps = 85/673 (12%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTDEK---------------------ALHHLFSEVIDN 84
           A+  + L   + V  RP  YIG T  +                     AL  +F E+I N
Sbjct: 2   ANRYQKLSQRDHVLARPDTYIGSTAPQTKNEWVYVDGKVIKKDVTYSSALLKIFDEIITN 61

Query: 85  AMDEVIAGYANLI-EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143
           + D         I ++ +D    ++V ++G  IP+E H         E+I   L AG  F
Sbjct: 62  SADCYNRDKRLTILKICIDET-SVSVFNDGCLIPIEKHD-VEKCYIPELIFGHLLAGENF 119

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D++      G +G+G    N  S    V +   N  + Q +   + +    K        
Sbjct: 120 DDTEQRTGAGRNGIGSKATNIFSKIFDVEICDGNKKYKQTWRDNMSVVSKPKVTTCSKNP 179

Query: 204 GTRITFRPDPKIF--GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
               TF PD + F          + + +     A + G+VK   +  +   +      ++
Sbjct: 180 YITTTFFPDFERFGVDTFDDDILSVMRRRVYDMAAVLGKVKVMLNGKRLEIKNT----ED 235

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
            F    G K+  +   E+                       +  +A  E+   ++     
Sbjct: 236 YFSLYIGSKSETKRAFEHTP------------------EEWDVGVACVEDFTPVSFV--N 275

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
            +   GGTH + +   + + + + A     K+ I +    +       ++  I  P F  
Sbjct: 276 SVVTRGGTHVNAVSDVVVKAVIEAAA----KKKIIVKPSTVKNRMFVFVNATIVNPTFDS 331

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK  L S +A+ T+  A                  LL+ VI+ +  R     Q+E+ + 
Sbjct: 332 QTKEILTSRNARVTLSEAFLKKAV----------GVLLDVVIQETNVRTSLVDQKELKKT 381

Query: 442 TAIRKLRL--PGKLADCSQ---NIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLR 493
              +K+R+    KL D +    N +    L + EGDSA   A    +   R    V PLR
Sbjct: 382 DGTKKIRVTGIPKLNDATWAGTNNSKMCTLILTEGDSAATLAIAGLSVVGRERYGVFPLR 441

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDADVDGAHIA 552
           GK+LNV  A    I  N++I  L Q LG +T   Y++   LRY  V+IMTDADVDG HI+
Sbjct: 442 GKLLNVRDASVASITKNEEITALKQILGLQTGKVYKDTSSLRYGHVMIMTDADVDGTHIS 501

Query: 553 SLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK 611
            L++ FF+    +L+E    L     P+    +G +          +  +   K     K
Sbjct: 502 GLVMNFFHSCFPNLLEIPGFLKKFITPIVVARKGKEVREFFSLPDFEDFV---KTQDMKK 558

Query: 612 IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERF 671
                FKGLG   ++  K+   +      L        +S +    S NK   ++A++R 
Sbjct: 559 WTTKYFKGLGTSSSADAKKYFSNLKS---LMKTFMWTSDSGELIDRSFNK---SRAEDRK 612

Query: 672 KFI--QERASFID 682
           +++   E  + +D
Sbjct: 613 EWMTAYEPGNQLD 625


>gi|308814356|ref|YP_003934630.1| topoisomerase II large subunit N-terminal region [Shigella phage
           SP18]
 gi|308205948|gb|ADO19347.1| topoisomerase II large subunit N-terminal region [Shigella phage
           SP18]
          Length = 610

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 135/661 (20%), Positives = 234/661 (35%), Gaps = 82/661 (12%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTD-----------------EKALHHLFSEVIDNAMDE 88
            + I++L  +E ++ R GMYIG +                     +  L  E+IDN++DE
Sbjct: 4   NNEIKVLSDVEHIKKRSGMYIGSSSNEAHERFLFGEYKSVSYVPGIVKLIDEIIDNSVDE 63

Query: 89  VIA---GYANLIEVSLDGNGFLTVVDNGRGIPVENHPK--FPNKSTLEIILTTLHAGGKF 143
            I     +AN I+V +  +  ++V DNGRGIP                   T   AGG F
Sbjct: 64  AIRTSFKFANKIDVQI-KDNQISVSDNGRGIPQAMVTDQNGEQIPGPVAAWTIPKAGGNF 122

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
            +     +GG++GVG S+ N  S       A      +   S G+         K    +
Sbjct: 123 GDDAERKTGGMNGVGSSLTNIFSVLFTGITADGANEITVNCSNGMENKGWS--TKKSKGK 180

Query: 204 GTRITFRPDPKIFGDKA--GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           GT + F PD   F + +         L   Q+ A +   ++  ++  K            
Sbjct: 181 GTTVIFVPDFSHFEENSLSQIYLDITLDRLQTLAVVYPDIQFTFNGKKV----------- 229

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
                G  K + +                 TE       TV  A     +     +Y N 
Sbjct: 230 ----DGNFKKFSKQ--------------FGTEVVIQETDTVSMAFTTSPDGFRQLTYVNN 271

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVF-IREPEFA 380
           I T  GG H   +   +   ++    + +  + I +    +      ++ +  +    F 
Sbjct: 272 IHTKNGGHHVECVMDDICEHLQ--PAIKRKYKGIEVTKARVKECLTMLMFIRDMSNMRFD 329

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
            QTK +L S   +              + Q  ++   L+  ++E +  R    ++    +
Sbjct: 330 SQTKERLTSPAGEIR---NHIKIDAKKIAQAILKNEPLIMPIVEAALARKLAAEKAAETK 386

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTE--LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
                      K    ++      E  LF+ EGDSA G   + R+R  Q   PLRGK  N
Sbjct: 387 ANKKASKAKVQKHIKANEWGNDKLETTLFLTEGDSATGPFIKVRDRELQGAYPLRGKFKN 446

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
                + ++  N +  D+    G         E++ Y  + IMTDADVDG       L  
Sbjct: 447 TWGLKAVEVMKNAEAFDVCAITGLTIGQPA--ENMNYRNIAIMTDADVDGVGSIYPSLLA 504

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           F+    +L  +  +  +  P+       K  + +     ++  ++  KH      I   K
Sbjct: 505 FFSNWPELFHEGRIRFVKTPVIIAQLKDKQEWFYSLPDYEEAKDKLPKH-----TIRYIK 559

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           GLG +  S+ K        R LL       +    + ++    L G  + +R  ++   A
Sbjct: 560 GLGSLEDSEYK--------RVLLEPVFE-VVQLPDNWKELFEMLFGKDSQQRKDWM--NA 608

Query: 679 S 679
           +
Sbjct: 609 T 609


>gi|194339085|gb|ACF49458.1| GyrB [Amycolatopsis mediterranei]
          Length = 447

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 172/454 (37%), Positives = 259/454 (57%), Gaps = 19/454 (4%)

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           HHL  EV+DN++DE +AG+A  +EV+L  +G + VVD+GRGIPV+ HPK   K TLE++L
Sbjct: 1   HHLVQEVVDNSVDEAMAGHATKVEVTLLADGGVRVVDDGRGIPVDMHPK-EQKPTLEVVL 59

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFD+ +Y +SGGLHGVG+SVVNALS +L   V      + Q+++  IP  PLE
Sbjct: 60  TVLHAGGKFDSDSYAVSGGLHGVGVSVVNALSKKLLAEVKYGGRSWRQEYTDQIP-GPLE 118

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK----- 249
                    GT ITF  D  IF     ++   + +  Q  A+L+  +      ++     
Sbjct: 119 DLGPASE-TGTTITFWADGDIFET-TTYNFETISRRLQEMAFLNKGLTLSLRDERVADEE 176

Query: 250 ---EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
              +   K    +++ + +PGGL+ +++    ++  I S + + + +  G     VE A+
Sbjct: 177 AEADAEGKVARVKEKTYCYPGGLEDFVKHINGSKDPIHSSVISFEAKGTG---LEVEVAM 233

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W     P + ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  DD+ 
Sbjct: 234 QWNNGFTPSVYTFANTINTHEGGTHEEGFRAALTRVVNTYARDKKLLKEKDTNLTGDDVR 293

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                I+S+ + EP+F GQTKTKL + +A+  V+    +    +  +NP EA  ++   I
Sbjct: 294 EGLAAIVSIKLSEPQFEGQTKTKLGNSEAKTFVQQTSNEWLADWFERNPTEAKTIINKSI 353

Query: 424 ERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
             ++ R+  RK R+ V RK A+    LPGKL DC        EL+IVEGDSAGGSAK+ R
Sbjct: 354 SSAQARMAARKARDLVRRKGALDIGGLPGKLKDCRSTKPEECELYIVEGDSAGGSAKEGR 413

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +   QA+LP+RGKI+NV  A  +++  N ++  L
Sbjct: 414 DSMYQAILPIRGKIINVEKARIDRVLKNTEVQSL 447


>gi|58761291|gb|AAW82360.1| DNA gyrase subunit B [Dehalococcoides sp. Pinellas]
          Length = 451

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 176/464 (37%), Positives = 262/464 (56%), Gaps = 17/464 (3%)

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           HHL  E++ N++DE +AG  + I+V +  +G ++V DNGRGIPV+ H      S LE ++
Sbjct: 1   HHLVYEIVYNSVDEAMAGVCDRIKVIMFKDGSVSVEDNGRGIPVDIHS-TTKISALETVM 59

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAG KF   TY++SGGLHGVG SVVNALS+   V V R   I+ Q + RG P +PLE
Sbjct: 60  TVLHAGAKFGGKTYQVSGGLHGVGASVVNALSEWTTVKVRRNGKIYQQSYLRGKPSTPLE 119

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
           +   V    GT   F  D +IF     +D   L    +  AYL+  ++     +K   E+
Sbjct: 120 EVG-VSEGSGTTTIFMADSQIFST-TEYDFETLTDRLREIAYLNKGLEVYIYDEKSDQER 177

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE 314
                   +YF GG+  +++    NR +   +      +   T    +E AI + +   +
Sbjct: 178 T-------YYFEGGITGFVRHLNRNREVRHRQPIYITKKSDSTI---LEVAIQYNDGYSD 227

Query: 315 -ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILS 371
              ++ N + T +GGTH +G R ALTR    YA  ++  +    +++ DD+    V I+S
Sbjct: 228 STLTFANCVNTVDGGTHLTGFRSALTRAFNDYAHKSKFLKDTDPNLMGDDVREGIVAIVS 287

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V + EP+F GQTK KL +++ +  VE+A+ +    YL ++P +  ++LE  I  ++ R  
Sbjct: 288 VKLPEPQFEGQTKGKLGNIEIKSFVESAVAEQLSLYLEEHPDDTKRILEKCITAAKAREA 347

Query: 432 RRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            RK R+ + RK+A+    LPGKLADCS+  A   ELF+VEGDSAGGSAKQ RNR  QA+L
Sbjct: 348 ARKARDLIIRKSALDTGTLPGKLADCSERDASLCELFLVEGDSAGGSAKQGRNRRFQAIL 407

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
           PLRGKILNV  A  +K+  +++I  ++ AL     + +    LR
Sbjct: 408 PLRGKILNVEKASPDKMLAHEEIRAIITALAAGIDNDFDPAKLR 451


>gi|311337319|gb|ADP89909.1| DNA gyrase subunit B [Amycolatopsis sp. S1.3]
          Length = 461

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 173/468 (36%), Positives = 261/468 (55%), Gaps = 19/468 (4%)

Query: 78  FSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137
             EV+DN++DE +AGYA  +EV+L  +G + VVD+GRGIPV+ HPK   K TLE++LT L
Sbjct: 1   VQEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVDMHPK-EKKPTLEVVLTIL 59

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKFD+ +Y +SGGLHGVG+SVVNALS +L   +      + Q+++  +P  PLE   
Sbjct: 60  HAGGKFDSDSYAVSGGLHGVGVSVVNALSTKLLAEIKVGGRSWRQEYTNQVP-GPLEDLG 118

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
                 GT ITF  D  IF     ++   + +  Q  A+L+  +      ++   E+   
Sbjct: 119 PATE-TGTTITFWADDGIFET-TTYNFETISRRLQEMAFLNKGLTLSLRDERVADEETEE 176

Query: 258 P--------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
                    +++ + +PGGL+ +++    ++  I   + +   +  G     VE A+ W 
Sbjct: 177 DAAGKPARIKEKVYCYPGGLEDFVKHINGSKDPIHESVISFDAKGAG---LEVEVAMQWN 233

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISA 366
               P + ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  DD+    
Sbjct: 234 TGFTPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDANLTGDDVREGL 293

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             I+S+ + EP+F GQTKTKL + +A+  V+    +    +  +NP EA  ++   I  +
Sbjct: 294 AAIVSIKLSEPQFEGQTKTKLGNSEAKTFVQQQSNEWLGDWFERNPSEAKTIINKSISSA 353

Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
           + RL  RK R+ V RK A+    LPGKL DC  N     EL+IVEGDSAGGSAK+ R+  
Sbjct: 354 QARLAARKARDLVRRKGALEIGGLPGKLKDCRSNDPGECELYIVEGDSAGGSAKEGRDSM 413

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
            QA+LP+RGKI+NV  A  +++  N ++  L+ ALG      +    L
Sbjct: 414 YQAILPIRGKIINVEKARIDRVLKNTEVQSLITALGTGIHDDFDLSKL 461


>gi|312599337|gb|ADQ91360.1| hypothetical protein BpV2_193c [Bathycoccus sp. RCC1105 virus BpV2]
          Length = 1073

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 127/670 (18%), Positives = 241/670 (35%), Gaps = 74/670 (11%)

Query: 47  SSIRILEGLEPVRMRPGMYIGGTD---------------------EKALHHLFSEVIDNA 85
            SI+ L  +E +  RP  Y+G                          AL  +F E++ NA
Sbjct: 3   ESIQKLTHVEHILKRPDSYVGPVSRVAEPYWIYENGSFEKKTVMYSPALLKIFDEILVNA 62

Query: 86  MDEVIA--GYANLIEVSLDGN-GFLTVVDNGR--GIPVENHPKFPNKSTLEIILTTLHAG 140
           +D           + VS+D   G +T+ +NG   GI V+ H K       E+    L   
Sbjct: 63  IDRNSMYPKNVTSMSVSIDKTSGQITIENNGPLGGIAVKMHEK-EGLWNPELTFGHLLTS 121

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
             +D++   + GG +G G  + N  S    + +                   +      +
Sbjct: 122 TNYDDTQKRLVGGRNGYGAKLTNVYSSMFSIKIKDGENKCIYTQEW---SDNMRTCGTPK 178

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
            K+ +  T         D   F  +++                    +K + +      +
Sbjct: 179 IKKYSNATSSVSITFVPDWKRFGMSKMDD------------SIYKIFEKRVYDANICTSQ 226

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCN 320
                  G      T      + +                     IA  ++  E  S+ N
Sbjct: 227 NCKVKFQGDALPKATFNTYAKMYTKSDEICTFTSD-----RWSVCIAPSDDGFEHVSFVN 281

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFA 380
            I T +GG+H   +   L  GI +        + I +    +  +    +   +  P F+
Sbjct: 282 GICTTKGGSHVDHVSGILANGIIE-----DMAKKIKLRPQQVKNAFFVFVKATLVNPSFS 336

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
            Q K++          +      F   +++  I++  +        +E  +    R+   
Sbjct: 337 SQVKSECTLKPQDFGSKFEPPKTFIKNILKTGIQSELMALSKFREMKELKKTDGSRKSK- 395

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKIL 497
              I  +             +    L + EGDSA   A    +   R +  V PLRGK  
Sbjct: 396 ---ITGIPKLDDANKAGTTHSGKCTLIVTEGDSAKTLAIAGLSVVGRDHYGVFPLRGKCK 452

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLL 556
           NV  A  +++  N++  DL + LG +    Y    +LRY +++IMTDAD DG+HI  L+L
Sbjct: 453 NVRDASVKQLTENKEFNDLKKILGLQQGKVYTSLSELRYGRLMIMTDADNDGSHIKGLIL 512

Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616
              +     L++   +  +  P+ + T+G+++   + +   ++        GK   +I  
Sbjct: 513 NMIHYFWPSLLKLNFVVSMVTPIIKATKGSETKSFYTDSTFRQWY----GTGKAGWKIKY 568

Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI-- 674
           +KGLG   + + +E      K   L V+ + D +  +    + +K   TK+D R  ++  
Sbjct: 569 YKGLGTSTSVEAREYF---KKIKDLTVQFDTDDSMDESIILAFDK---TKSDLRKTWLLE 622

Query: 675 --QERASFID 682
             +++AS ++
Sbjct: 623 STEKKASELE 632


>gi|221126299|ref|XP_002165304.1| PREDICTED: similar to DNA topoisomerase IV subunit B [Hydra
           magnipapillata]
          Length = 350

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 133/351 (37%), Positives = 193/351 (54%), Gaps = 20/351 (5%)

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            K  + +  DD+      +LSV + EP+F+ QTK KLVS + +  VE+ +      YL +
Sbjct: 3   KKAKVEVTGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRGPVEDIVGKLLADYLEE 62

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIV 469
            P +A  ++  +IE +  R   RK R++ R+   +  + LPGKLADC +      E++IV
Sbjct: 63  RPNDAKIIVGKIIEAARAREAARKARDMTRRKGVLDGMGLPGKLADCQEKDPAMCEIYIV 122

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR---- 525
           EGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  EK+  + +I+ L+ ALG        
Sbjct: 123 EGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARYEKLLTSNEILTLITALGTGIGKAGG 182

Query: 526 ----SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581
                 +    LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ H+++  PPL++
Sbjct: 183 STGGDDFNVAKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYK 242

Query: 582 ITQGTKSVYAHDEEHKQKILEEFK-------KHGKGKIEISRFKGLGEMLASQLKETAMD 634
           +  G + +Y          L             G       R+KGLGEM  +QL ET MD
Sbjct: 243 VKSGKEELYLQGPAELDGYLLRIALVNASVYTGGPNGTTRQRYKGLGEMNPAQLWETTMD 302

Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
              R LLRV+I+  +    +       LMG + + R  FI+  A    ++ 
Sbjct: 303 PTVRRLLRVQIDDAI----EADRVFTMLMGDEVEPRRDFIETNALRAGNID 349


>gi|194339119|gb|ACF49475.1| GyrB [Amycolatopsis vancoresmycina]
          Length = 447

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 172/454 (37%), Positives = 257/454 (56%), Gaps = 19/454 (4%)

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           HHL  EV+DN++DE +AGYA  +EV+L  +G + VVD+GRGIPV+ HPK   K TLE++L
Sbjct: 1   HHLVQEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVDMHPK-EQKPTLEVVL 59

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFD+ +Y +SGGLHGVG+SVVNALS +L   V      + Q+++  IP  PLE
Sbjct: 60  TVLHAGGKFDSDSYAVSGGLHGVGVSVVNALSKKLLAEVKYGGRSWRQEYTDQIP-GPLE 118

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK----- 249
                    GT ITF  D  IF     ++   + +  Q  A+L+  +      ++     
Sbjct: 119 DLGPAAE-TGTTITFWADGDIFET-TTYNFETISRRLQEMAFLNKGLTLSLRDERVADEE 176

Query: 250 ---EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
              +   K    +++ + +PGGL+ +++    ++  I   + +   +  G     VE A+
Sbjct: 177 AEEDAEGKVARVKEKTYCYPGGLEDFVKHINGSKDPIHPSVISFDAKGTG---LEVEVAM 233

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W     P + ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  DD+ 
Sbjct: 234 QWNTGFTPSVYTFANTINTHEGGTHEEGFRAALTRVVNSYARDKKLLKEKDANLTGDDVR 293

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                I+S+ + EP+F GQTKTKL + +A+  V+    +    +  +NP EA  ++   I
Sbjct: 294 EGLAAIVSIKLAEPQFEGQTKTKLGNSEAKTFVQQTSNEWLADWFERNPTEAKTIINKSI 353

Query: 424 ERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
             ++ R+  RK R+ V RK A+    LPGKL DC        EL+IVEGDSAGGSAK+ R
Sbjct: 354 SSAQARMAARKARDLVRRKGALEIGGLPGKLKDCRSTNPEECELYIVEGDSAGGSAKEGR 413

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +   QA+LP+RGKI+NV  A  +++  N ++  L
Sbjct: 414 DSMYQAILPIRGKIINVEKARIDRVLKNTEVQSL 447


>gi|290892044|ref|ZP_06555041.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|290558638|gb|EFD92155.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
          Length = 258

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 103/247 (41%), Positives = 148/247 (59%), Gaps = 6/247 (2%)

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 17  RKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILN 76

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 77  VEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTL 136

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+K
Sbjct: 137 FYRYMRPLLDAGYIYIAQPPLYQIKHGKQVEYVYSDGQLEDYLASL--DGDTKYSIQRYK 194

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           GLGEM   QL +T M+   RTLL+V I   +    D  ++   LMG + + R KFI++ A
Sbjct: 195 GLGEMNPEQLWDTTMNPEHRTLLQVNIKDAI----DADETFEMLMGDRVEPRRKFIEDNA 250

Query: 679 SFIDDVG 685
            ++ ++ 
Sbjct: 251 QYVKNLD 257


>gi|194339059|gb|ACF49445.1| GyrB [Amycolatopsis azurea]
          Length = 446

 Score =  314 bits (803), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 167/452 (36%), Positives = 253/452 (55%), Gaps = 19/452 (4%)

Query: 77  LFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTT 136
           L  EV+DN++DE +AGYA  +EV+L  +G + VVD+GRGIPV+ HPK   K TLE++LT 
Sbjct: 1   LVQEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVDIHPK-EQKPTLEVVLTV 59

Query: 137 LHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK 196
           LHAGGKFD+ +Y +SGGLHGVG+SVVNALS +L   V R    + Q++   IP    +  
Sbjct: 60  LHAGGKFDSDSYAVSGGLHGVGVSVVNALSTKLIAEVKRGGHSWRQEYIDQIPGELQDL- 118

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
                  GT ITF  D  IF     ++   + +  Q  A+L+  +      ++   E+  
Sbjct: 119 -GPAEDTGTVITFWADGSIFET-TTYNFETISRRLQEMAFLNKGLTLSLRDERVADEETE 176

Query: 257 IP--------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
                     +++ + +PGGL+ +++    ++  I   + + + +  G     VE A+ W
Sbjct: 177 EDASGQAARVKEKTYCYPGGLEDFVKHINGSKDPIHPNVISFEAKGTG---LEVEVAMQW 233

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
                P + ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  DD+   
Sbjct: 234 NNGFTPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYARDKKLLKEKDANLTGDDVREG 293

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              I+S+ + EP+F GQTKTKL + +A+  V+    +    +  +NP E+  ++   I  
Sbjct: 294 LAAIVSIKLSEPQFEGQTKTKLGNSEAKTFVQQTSNEWLADWFERNPTESKTIINKSISS 353

Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           +  R+  RK R+ V RK A+    LPGKL DC        EL+IVEGDSAGGSAK+ R+ 
Sbjct: 354 AHARMAARKARDLVRRKGALEIGGLPGKLKDCRSTNPSECELYIVEGDSAGGSAKEGRDS 413

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
             QA+LP+RGKI+NV  A  +++  N ++  L
Sbjct: 414 MYQAILPIRGKIINVEKARIDRVLKNTEVQSL 445


>gi|13358820|dbj|BAB33156.1| DNA gyrase B subunit [Porphyromonas levii]
          Length = 477

 Score =  314 bits (803), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 178/483 (36%), Positives = 278/483 (57%), Gaps = 15/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALS +L   V R   I+ Q++S+GIP + +E   +  ++ 
Sbjct: 1   DKGSYKVSGGLHGVGVSCVNALSTKLVAEVYRDGKIYKQEYSKGIPQTEVEVIGET-DRT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF PD  IF     ++   L    +  AYL+  VK   +  ++  E+   P  + F
Sbjct: 60  GTSVTFLPDDSIFMVTV-YEYNILANRLRELAYLNAGVKISLTDFRDRDEEG-NPRSQTF 117

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           Y   GLK ++     ++  +  E+     +K       VE A+ +       + SY N I
Sbjct: 118 YSQEGLKEFVHYLDSSKEHLMEEVIHMVNDK---GDMPVEVAMTYNTTFNENVYSYVNNI 174

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH +G R ALTR +KKYA+ +    K  + ++ DD       ++S+ + EP+F 
Sbjct: 175 NTIEGGTHLTGFRRALTRTLKKYADDSGILEKEKVEVLGDDFREGLTAVVSIKVAEPQFE 234

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A   V+ A+ +    +L ++P EA  +++ V+  ++ R+  ++ RE+ +
Sbjct: 235 GQTKTKLGNSEAVGAVDAAVSEALTVFLEEHPKEARLIVDKVVLAAKARMAAKRAREMVQ 294

Query: 441 KTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +   +    LPGKLADC        ELF+VEGDSAGG+AKQ R+   QA+LPLRGKILNV
Sbjct: 295 RKGPMFSGGLPGKLADCRSRDPEICELFLVEGDSAGGTAKQGRDSMFQAILPLRGKILNV 354

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASL 554
             A   ++  NQ+I  +  ALG    ++        + LRY KVIIMTDADVDG+HIA+L
Sbjct: 355 EKAMVHRVLENQEIQAMYTALGVSIGTEEDPKALNIDKLRYHKVIIMTDADVDGSHIATL 414

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           LLTFF+++M  LIE+ ++++ +PPL++  +G    Y  ++E +Q  +E++    + KI  
Sbjct: 415 LLTFFFRQMRVLIERGYVYIATPPLYQCKKGDVIRYCWNDEERQAFIEKYGDGDENKIIT 474

Query: 615 SRF 617
            R+
Sbjct: 475 QRY 477


>gi|194339111|gb|ACF49471.1| GyrB [Amycolatopsis sulphurea]
          Length = 464

 Score =  314 bits (803), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 175/471 (37%), Positives = 265/471 (56%), Gaps = 19/471 (4%)

Query: 76  HLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILT 135
           HL  EV+DN++DE +AG+A  +EV+L  +G + VVD+GRGIPV+ HPK   K TLE++LT
Sbjct: 1   HLVQEVVDNSVDEAMAGFATKVEVTLLADGGVRVVDDGRGIPVDLHPK-EQKPTLEVVLT 59

Query: 136 TLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK 195
            LHAGGKFD+ +Y +SGGLHGVG+SVVNALS +L   +      + Q ++  +P  PLE 
Sbjct: 60  ILHAGGKFDSDSYAVSGGLHGVGVSVVNALSTKLLAEIQVGGRSWRQLYTDQVP-GPLED 118

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
                   GT ITF  D  IF     ++   + +  Q  A+L+  +      ++   E+ 
Sbjct: 119 LGPATE-TGTTITFWADSNIFET-TTYNFETISRRLQEMAFLNKGLTLSLRDERVSDEET 176

Query: 256 GIP--------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307
                      +++ + +PGGL+ +++    ++  I + + + + +  G     VE A+ 
Sbjct: 177 EADAEGKQARVKEKVYCYPGGLEDFVKHINGSKDPIHASVISFEAKGTG---LEVEVAMQ 233

Query: 308 WCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMI 364
           W     P + ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  DD+  
Sbjct: 234 WNTGFTPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYARDKKLLREKDANLTGDDVRE 293

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
               I+S+ + EP+F GQTKTKL + +A+  V+    +    +  +NP EA  ++   I 
Sbjct: 294 GLAAIVSIKLAEPQFEGQTKTKLGNSEAKTFVQQQSNEWLADWFERNPAEAKTIINKSIS 353

Query: 425 RSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483
            ++ RL  RK R+ V RK A+    LPGKL DC  N     EL+IVEGDSAGGSAK+ R+
Sbjct: 354 SAQARLAARKARDLVRRKGALEIGGLPGKLKDCRSNDPGECELYIVEGDSAGGSAKEGRD 413

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
              QA+LP+RGKI+NV  A  +++  N ++  L+ ALG      +    LR
Sbjct: 414 SMYQAILPIRGKIINVEKARIDRVLKNTEVQSLITALGTGIHDDFDLSKLR 464


>gi|300865367|ref|ZP_07110178.1| DNA gyrase subunit B (fragment) [Oscillatoria sp. PCC 6506]
 gi|300336670|emb|CBN55328.1| DNA gyrase subunit B (fragment) [Oscillatoria sp. PCC 6506]
          Length = 410

 Score =  314 bits (803), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 135/408 (33%), Positives = 220/408 (53%), Gaps = 5/408 (1%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           NY A  I+IL   E VR RPGMYIG T  + LHHL  EV+DN++DE +AGY   I+V ++
Sbjct: 3   NYSADQIQILTPTEAVRKRPGMYIGTTGARGLHHLVYEVVDNSIDEAMAGYCTHIQVDIN 62

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G +TV D+GRGIP +   K   KS +E +LT LH G   D  +Y++SGGLHGVGI+V+
Sbjct: 63  ADGSVTVTDDGRGIPSDIVAKN-GKSFVETVLTVLHRGEWCDRDSYKVSGGLHGVGIAVI 121

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+ L VTV R+  I++Q+F RGIP++ L  K  + N+ GT +TF+PD +IF     F
Sbjct: 122 NALSEWLEVTVWRKEQIYTQRFERGIPVTELIAKPSLENRTGTSVTFKPDSQIFTTSIEF 181

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D        +  AY++  +    + +         P  E + F  G++ Y+     ++  
Sbjct: 182 DYNTFAIHLRQIAYVNPGLTIILTDNSLEMLDSSSPRIETYCFELGIREYVAYLNSDKEP 241

Query: 283 ISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
           +  E+   + ++ G   +   +W +       ++  + N+I T +GGTH   L++A+ R 
Sbjct: 242 LHEEVIYIEGDRNGIQVQIAFQWYVPSEYGYDKLLGFANSIRTIDGGTHIESLKLAIPRT 301

Query: 342 IKKYAELTQNKRAISIIS---DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
           +   A      +         D       GI++V +  P F G T+T+L +L+ +  +E+
Sbjct: 302 VSAIAHKLGKLKDADTNLGWMDGFNCGYTGIIAVKLPNPIFEGPTRTRLANLEVREFIES 361

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
            +R+    YL  +P  A  ++E  I+     + +R++R + R+  + K
Sbjct: 362 LVREKLTEYLEAHPDVAIAIVEQAIQAHNTAVTKRQERVLLRQQELLK 409


>gi|223983625|ref|ZP_03633803.1| hypothetical protein HOLDEFILI_01084 [Holdemania filiformis DSM
           12042]
 gi|223964392|gb|EEF68726.1| hypothetical protein HOLDEFILI_01084 [Holdemania filiformis DSM
           12042]
          Length = 328

 Score =  313 bits (801), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 127/320 (39%), Positives = 181/320 (56%), Gaps = 10/320 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +    +Y +  I++LEGLE VR RPGMYIG T EK LHHL  E++DN++DE +AGYA  
Sbjct: 2   EKPVEHSYTSHDIQVLEGLEAVRKRPGMYIGSTSEKGLHHLVWEIVDNSIDEALAGYATE 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IE+S+D    +TV DNGRG+PVE H K    ST+E I T LHAGGKF    Y++SGGLHG
Sbjct: 62  IEISVDPQNIVTVEDNGRGMPVEIHEK-TGISTVETIFTVLHAGGKFGGGAYKVSGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK--RGTRITFRPDPK 214
           VG SVVNALS+ L VTV ++  +F  +F  G       K+    +    G+ + F  D  
Sbjct: 121 VGASVVNALSEWLEVTVYKEGKVFFIRFENGGKAVAPLKQIGTCDPSKHGSLVRFLADAT 180

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF +   ++   L    +  A+L+  +K  ++ ++   E         F + GGLK Y+ 
Sbjct: 181 IFTETVAYNHDVLYDRLRQIAFLNKGIKLLFTDERMEDE---AKRSHTFLYEGGLKEYIA 237

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  EI   + E+ G     VE A+ + +   P + S+CN I T EGGTHE G
Sbjct: 238 FLNKNKTPIHEEIIYVEGEQDGIQ---VEIAMQYNDGYVPNVYSFCNNINTGEGGTHEEG 294

Query: 334 LRVALTRGIKKYAELTQNKR 353
            ++AL R +  YA+     +
Sbjct: 295 FKLALNRTLNSYAKEAGLLK 314


>gi|6946705|dbj|BAA90683.1| DNA gyrase subunit B [Rikenella microfusus]
          Length = 476

 Score =  313 bits (801), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 188/483 (38%), Positives = 272/483 (56%), Gaps = 16/483 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALS +L   V RQ  IF Q+FSRG+P   +E         
Sbjct: 1   DKGSYKVSGGLHGVGVSCVNALSTDLEAVVHRQGKIFRQRFSRGVPQGDIEVIGTTDRTG 60

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
              ITF+PD +IF     ++   L    +  AYL+  +    +  +E  E+ G    + +
Sbjct: 61  T-TITFKPDGEIFTQTTVYNYDILNSRLRELAYLNKGIHLNITDKREKDEESGEYRHDNY 119

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTI 322
           Y   GLK +++    NR  +  E      E+ G     +E A+ +     E   +Y N I
Sbjct: 120 YSQEGLKEFVKFLDGNREPLIEETIHITGERDGVP---IEVALQYNTGFSENVHTYVNNI 176

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH +G R  LTR +KKYAE +    K    I  DD       I+SV + EP+F 
Sbjct: 177 NTIEGGTHLTGFRRGLTRTLKKYAEDSGMLAKLKFEISGDDFREGLTAIISVKVAEPQFE 236

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVN 439
           GQTKTKL + +    V+NA+     +YL +NP +A  +++ VI   +     R+ +  V 
Sbjct: 237 GQTKTKLGNSEVAGAVDNAVSAALTNYLEENPKDAKAIVQKVILAATARTAARKARDLVQ 296

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RKT +    LPGKLADCS      TE+F+VEGDSAGG+AKQ R+R+ QA++PLRGKILNV
Sbjct: 297 RKTVLSGSGLPGKLADCSSRDMEKTEMFLVEGDSAGGTAKQGRDRTFQAIMPLRGKILNV 356

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASL 554
             A   K+ +N++I ++  ALG    ++   +      LRY KVIIMTDADVDG+HIA+L
Sbjct: 357 EKATDHKMYDNEEIKNIFTALGVTIGTEEDSKALNLSKLRYGKVIIMTDADVDGSHIATL 416

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           ++TFF++ M D+I+  HLF+ +PPL+ + +G +  Y   +E +   +EEF   G   +  
Sbjct: 417 IMTFFFRRMPDIIQNGHLFIATPPLYLVKKGKQERYCWTDEERIATIEEF---GTKGVHT 473

Query: 615 SRF 617
            R+
Sbjct: 474 QRY 476


>gi|258545480|ref|ZP_05705714.1| DNA topoisomerase IV, B subunit [Cardiobacterium hominis ATCC
           15826]
 gi|258519180|gb|EEV88039.1| DNA topoisomerase IV, B subunit [Cardiobacterium hominis ATCC
           15826]
          Length = 402

 Score =  313 bits (801), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 140/401 (34%), Positives = 209/401 (52%), Gaps = 11/401 (2%)

Query: 289 TGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
               + +G     + W+ +    N    SY N I T  GGTH +GLR  L   ++++ E 
Sbjct: 1   MSHHDDEGQIDLALTWSESA-GANGTYESYANLIPTTGGGTHVNGLRTGLVEALREFCEF 59

Query: 349 TQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
                R + +  +D+      +LSV I EP+F+ QTK +L S      V    +D F  Y
Sbjct: 60  RDLLPRGVKLAPEDIWEGCQYVLSVKIPEPQFSSQTKERLTSRQCAAWVAGISKDQFGLY 119

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
           L ++      L    I  +++RL     ++V RK A     LPGKLADC       TELF
Sbjct: 120 LNKHADIGEALAALAISHAQKRLNHN--KQVTRKRATSGPALPGKLADCISQDTRLTELF 177

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           +VEGDSAGGSAKQAR+R NQA++PLRGKI N     S  + ++Q+I D+  A+G    S 
Sbjct: 178 LVEGDSAGGSAKQARDRQNQAIMPLRGKIKNTWEDDSAVVMSSQEIHDIAVAIGIDPASD 237

Query: 528 YREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTK 587
                LRY K+ I+ DAD DG HIA+L+     +    L++  HL++  PPL+RI  G +
Sbjct: 238 DL-SGLRYGKICILADADSDGLHIATLICALMVKHFPALVKAGHLYVAMPPLYRIDAGKR 296

Query: 588 SVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646
             YA DE  +   +   ++ G  GKI ++RFKGLGEM   QL+ET M+ + R L+++  +
Sbjct: 297 IEYALDEGERDTAIATIRRDGYHGKINVTRFKGLGEMNPPQLRETTMNPDTRRLVQLTYH 356

Query: 647 KDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDVGT 686
             +         ++ L+  K A +R  +I+      D++  
Sbjct: 357 DAM----QADALLDMLLADKRAADRRAWIETNGDHADNLDA 393


>gi|148762477|dbj|BAF63940.1| DNA topoisomerase IV subunit B [Bacillus licheniformis]
          Length = 406

 Score =  313 bits (801), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 159/411 (38%), Positives = 231/411 (56%), Gaps = 14/411 (3%)

Query: 73  ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
            LHHL  E++DN++DE +AGY   I V+++ +  +TV DNGRGIPV  H K   +  +E+
Sbjct: 6   GLHHLVWEIVDNSIDEALAGYCTEINVAIEKDNSITVKDNGRGIPVGIHEKM-GRPAVEV 64

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
           I+T LHAGGKFD S Y++ GGLHGVG SVVNALS EL VTV R   I  Q+F RG+P + 
Sbjct: 65  IMTVLHAGGKFDGSGYKVYGGLHGVGASVVNALSTELDVTVYRDGKIHYQEFERGVPKAD 124

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
           L+         GT   F+PDP+IF +   +D   L    +  A+L+  VK      +E  
Sbjct: 125 LKVVGDT-EVTGTTTHFKPDPEIFTETTEYDYDTLATRVRELAFLTKGVKITIEDKREGK 183

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
           E+        + + GG+K+Y++    +R +I  E    +  K G    TVE A+ + +  
Sbjct: 184 ERKNE-----YCYEGGIKSYVEHLNRSREVIHEEPVYIEGSKDGI---TVEVALQYNDSY 235

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369
              I S+ N I T EGGTHE+G +  LTR I  YA       +   ++  +D+      I
Sbjct: 236 TSNIYSFANNIHTYEGGTHEAGFKTGLTRVINDYARRNGVFKESDPNLSGEDVREGLTAI 295

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEE 428
           +S+   +P+F GQTKTKL + +A+   +    +  + +L++NP  A K++E  V+     
Sbjct: 296 ISIKHPDPQFEGQTKTKLGNSEARTITDALFSEALEKFLLENPDSAKKIVEKGVMAARAR 355

Query: 429 RLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
              ++ +    RK+A+    LPGKLADCS      +EL+IVEGDSAGGSAK
Sbjct: 356 MAAKKARELTRRKSALEVSNLPGKLADCSSKDPTISELYIVEGDSAGGSAK 406


>gi|194339099|gb|ACF49465.1| GyrB [Amycolatopsis plumensis]
          Length = 446

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 170/453 (37%), Positives = 257/453 (56%), Gaps = 19/453 (4%)

Query: 76  HLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILT 135
           HL  EV+DN++DE +AGYA  +EV+L  +G + VVD+GRGIPV+ HPK  NK T+E++LT
Sbjct: 1   HLVQEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVDMHPK-ENKPTIEVVLT 59

Query: 136 TLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK 195
            LHAGGKFD+ +Y +SGGLHGVGISVVNALS +L   V      + Q+++  +P  PLE 
Sbjct: 60  QLHAGGKFDSDSYAVSGGLHGVGISVVNALSTKLLAEVKYGGRSWRQEYTNQVP-GPLED 118

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK------ 249
                   GT +TF  D  IF     ++   + +  Q  A+L+  +      ++      
Sbjct: 119 LGPATE-TGTTMTFWADGDIFET-TTYNFETISRRLQEMAFLNKGLTLSLRDERVADEET 176

Query: 250 --EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307
             +   K    +++ + +PGGL+ +++    ++  I   + +   +  G     VE A+ 
Sbjct: 177 EEDAEGKVARIKEKVYCYPGGLEDFVKHINGSKDPIHPSVISFDAKGTG---LEVEVAMQ 233

Query: 308 WCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMI 364
           W     P + ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  DD+  
Sbjct: 234 WNTGFTPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYARDKKLLKEKDANLTGDDVRE 293

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
               I+S+ + EP+F GQTKTKL + +A+  V+    +    +  +NP EA  ++   I 
Sbjct: 294 GLAAIVSIKLGEPQFEGQTKTKLGNSEAKTFVQQQSNEWLADWFERNPTEAKTIINKSIS 353

Query: 425 RSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483
            ++ R+  RK R+ V RK A+    LPGKL DC        EL+IVEGDSAGGSAK+ R+
Sbjct: 354 SAQARMAARKARDLVRRKGALDIGGLPGKLKDCRSTKPEECELYIVEGDSAGGSAKEGRD 413

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
              QA+LP+RGKI+NV  A  +++  N ++  L
Sbjct: 414 SMYQAILPIRGKIINVEKARIDRVLKNTEVQSL 446


>gi|154334646|ref|XP_001563570.1| mitochondrial DNA topoisomerase II [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134060591|emb|CAM42140.1| mitochondrial DNA topoisomerase II [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 1239

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 134/684 (19%), Positives = 253/684 (36%), Gaps = 74/684 (10%)

Query: 45  DASSIRILEGLEPVRMRPGMYIGGTDEK-----------------------ALHHLFSEV 81
           DAS  + L  ++ V +RP MY+G  + +                        L  +  E+
Sbjct: 3   DASKYKKLSPIDHVLLRPEMYVGSIETQPTPMYIFDPEKGKMVWETMRVNQGLLKIVDEI 62

Query: 82  IDNAMDEVIAGYA----NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137
           + NA D +           I +S+   G +TV ++G G+P+    +       E++   L
Sbjct: 63  LLNAADNINNSKGSVRQTYISISISDTGEITVENDGAGLPI-VRSREHKIYIPEMVFGHL 121

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF--SRGIPLSPLEK 195
                ++N +   + G HG G  + N LS +  V        F   +     +  +P   
Sbjct: 122 LTSSNYNNDSTSTTAGRHGYGAKLTNILSTKFSVICRTAGREFHMSWTDHMRMATAPRVS 181

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAG----FDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
           +   + K  TR+ F PD   FG             L K     A +  +++   +     
Sbjct: 182 RVDPKEKNVTRVKFMPDYAHFGFPNASISLDMKRVLHKRIMDLAAMFSKIEVRLNN---- 237

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
                      F F           L   +  +       T   G    +V +     + 
Sbjct: 238 ---------VPFGFETFTDYARLYSLPGPNGSTPPEPFVHTSPNG----SVAYVPQLTQS 284

Query: 312 NPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILS 371
              I    N ++T  GGTH +     L   +         K    + ++ +      ++ 
Sbjct: 285 PKRIVGVVNGVVTYNGGTHCNAAIDILDSCLDS-LSRNFKKEGKVVDTNRVQRHFTVLVF 343

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           +   +P+F  Q+K +LVS      V        + YL   P     +     + + E  +
Sbjct: 344 LIQAQPKFDSQSKARLVSTVTMPRVPKNT---LEKYLETMPFLEAHVNSMDDQLANELNK 400

Query: 432 RRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG---SAKQARNRSNQ 487
                R ++ KT I  +           +  +   L I EGDSA     ++  +  +   
Sbjct: 401 EIGAGRRLSSKTLISSITKLVDATSSRPDGRNIRTLIITEGDSAKALALNSLSSDQKKYC 460

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADV 546
            V PLRGK+LNV +   ++++  +++ DL  ALG     +YR  D LRY+++++MTD D 
Sbjct: 461 GVFPLRGKLLNVRNKNLKRLKMCKELQDLFLALGLELGKEYRTPDELRYQRLLVMTDQDA 520

Query: 547 DGAHIASLLLTFFYQEMYDLIEQ--KHLFLISPPLFRIT---QGTKSVYAHDEEHKQKIL 601
           DG+HI  L++  F      L++    ++ L S P+ +I    +  + +  H      +  
Sbjct: 521 DGSHIKGLVINAFESLWPTLLQNNPGYISLFSTPIVKIKVSGKSKEVIAFHSLRDFHRW- 579

Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
              + H   +     +KGLG    ++ KE   D  K  + R+ +  D    +      + 
Sbjct: 580 --QRAHPTARYTAKYYKGLGTSTTAEGKEYFADMEKNIM-RLTV--DAKDHQLLDSVFDA 634

Query: 662 LMGTKADERFKFIQERASFIDDVG 685
               + + R +++ +  +F  ++ 
Sbjct: 635 A---EVEWRKEWMTKANAFQGEID 655


>gi|194339087|gb|ACF49459.1| GyrB [Amycolatopsis methanolica]
          Length = 463

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 176/470 (37%), Positives = 261/470 (55%), Gaps = 19/470 (4%)

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           HHL  EV+DN++DE +AGYA  +EV+L  +G + VVD+GRGIPVE HP    KSTLEI+ 
Sbjct: 1   HHLIWEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVEEHP-VHKKSTLEIVH 59

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFD+ +Y +SGGLHGVG+SVVNALS  L V V+R    + Q +    P +  E
Sbjct: 60  TVLHAGGKFDSESYAVSGGLHGVGVSVVNALSRALDVEVSRDGKKWRQHYDHSKPGALEE 119

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK----- 249
                    GT  TF  DP IF     ++A  + +  Q  A+L+  +      ++     
Sbjct: 120 V--GPAEGTGTSTTFWADPDIFET-TTYNAETVSRRLQEMAFLNKGLSITLRDERVTEAE 176

Query: 250 ---EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
              ++  K    ++  +++PGGL+ +++    ++  I S I     +  G     VE A+
Sbjct: 177 TEADVDGKQARVKERVYHYPGGLEDFVKHINGSKDPIHSSIICFDAKGDG---LEVEVAM 233

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W     P + ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  DD+ 
Sbjct: 234 QWNNSFTPSVHTFANTINTHEGGTHEEGFRAALTRVVNAYARDKKLLKEKDENLSGDDVR 293

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                I+S+ + EP+F GQTKTKL + +A+  V++   +    +  +NP EA  ++   +
Sbjct: 294 EGLTAIISIKLAEPQFEGQTKTKLGNSEAKSFVQSKTNEWLSDWFERNPAEAKTIINKAL 353

Query: 424 ERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
             ++ R+  R+ R+ V RK A+    LPGKL DC        EL+IVEGDSAGGSAK+ R
Sbjct: 354 SSAQARMAARRARDLVRRKGALEIGGLPGKLKDCQSTNPEECELYIVEGDSAGGSAKEGR 413

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
               QA+LP+RGKI+NV  A  +++  N ++  L+ ALG      +    
Sbjct: 414 ESRFQAILPIRGKIINVEKARIDRVLKNNEVQSLITALGTGIHDDFDLSK 463


>gi|10039309|dbj|BAB13315.1| DNA gyrase B subunit [Capnocytophaga ochracea]
          Length = 481

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 184/491 (37%), Positives = 271/491 (55%), Gaps = 27/491 (5%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALSD L  TV R   I+ Q++ RG+ + P+++     +KR
Sbjct: 1   DKGSYKVSGGLHGVGVSCVNALSDHLTATVYRDGKIWQQEYQRGVAMYPVKQVGNT-DKR 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT++TF PD  IF     +    L    +  AYL+  +    +  +   EK      E+F
Sbjct: 60  GTKVTFHPDEVIFEQTIEYKYDTLAARIRELAYLNKGITITLTDLRNKDEKG-NFITEKF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTI 322
           Y   GLK +++    NR  I   +     EK G     VE A+ + +   E    Y N I
Sbjct: 119 YSQNGLKEFVKFLDGNRMPIIGNVIAMDGEKNGIP---VEVAMIYNDSYNENLHSYVNNI 175

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--------NKRAISIISDDLMISAVGILSVFI 374
            T EGGTH  G R+ LTR +K YA+ +          K  + I  DD       ++SV +
Sbjct: 176 NTSEGGTHLQGFRMGLTRTLKAYADKSGLLEKMSKDKKNPVEIEGDDFREGLTAVISVKV 235

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP+F GQTKTKL + +    V  A+    + YL +NP +A  ++E VI  ++ R   RK
Sbjct: 236 AEPQFEGQTKTKLGNREVTSAVSQAVGQMLEDYLEENPNDAKTIVEKVILAAQARQAARK 295

Query: 435 QREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            RE+ ++ + +    LPGKLADCS+      ELF+VEGDSAGG+AKQ RN+  QA+LPLR
Sbjct: 296 AREMVQRKSVMSGGGLPGKLADCSEEDPEKCELFLVEGDSAGGTAKQGRNKDIQAILPLR 355

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDG 548
           GKILNV  A   K+ ++ +I ++  ALG    ++   +      LRY KVIIM DADVDG
Sbjct: 356 GKILNVEKAMQHKVFDSDEIKNIYTALGVTVGTEEDAKALNLSKLRYHKVIIMCDADVDG 415

Query: 549 AHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG--TKSVYAHDEEHKQKILEEFKK 606
           +HI +L+LTFF++ M +LIE  H+++ +PPL+ +      +  YA +++ +  +  E   
Sbjct: 416 SHITTLILTFFFRYMRELIENGHVYIATPPLYLVKSKNSKREEYAWNDKQRDALSAEM-- 473

Query: 607 HGKGKIEISRF 617
              G + I R+
Sbjct: 474 ---GNVNIQRY 481


>gi|322497870|emb|CBZ32946.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1236

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 129/683 (18%), Positives = 248/683 (36%), Gaps = 72/683 (10%)

Query: 45  DASSIRILEGLEPVRMRPGMYIGGTDEK-----------------------ALHHLFSEV 81
           DAS  + L  ++ V +RP MY+G  + +                        L  +  E+
Sbjct: 3   DASKYKKLTPIDHVLLRPEMYVGSIETQPTPMYIFDPEKGRMVWETMRVNQGLLKIVDEI 62

Query: 82  IDNAMDEVIAGYA----NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137
           + NA D +           I + +   G +TV ++G G+P+    +       E++   L
Sbjct: 63  LLNAADNINNSKGSVRQTYISIHISDTGEITVENDGAGLPI-VRSREHKMYIPEMVFGHL 121

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF--SRGIPLSPLEK 195
                ++N +   + G HG G  + N LS +  V        F   +     +  +P   
Sbjct: 122 LTSSNYNNDSTSTTAGRHGYGAKLTNILSTKFSVVCRTDGREFHMSWTDHMRMATAPRVN 181

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAG----FDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
           +   + K  TR+ F PD   FG             L K     A +  +++   +     
Sbjct: 182 RVDPKEKNVTRVKFMPDYAHFGFPNASISLDMKRVLHKRIMDLAAMFSKIEVRLNN---- 237

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
                      F F           L              T   G    +V +     + 
Sbjct: 238 ---------VPFGFRTFTDYARLYSLPGLDGSMPPEPFVYTSPNG----SVAYVPQLTQS 284

Query: 312 NPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILS 371
              I    N ++T  GGTH +     L   +         K    + ++ +      ++ 
Sbjct: 285 PKRIVGVVNGVVTYNGGTHCNAAMDILDSCLDS-LSKNFKKNGKVVDTNRVQRHFTVLVF 343

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           +   +P+F  Q+K +LVS      V     + +        +EA          +E    
Sbjct: 344 LIQTQPKFDSQSKARLVSTVTMPRVPKNTLEKYLE--RMPFLEAHVNSMDDQLANELNKE 401

Query: 432 RRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG---SAKQARNRSNQA 488
               R ++ KT I  +           +  +   L I EGDSA     ++  +  +    
Sbjct: 402 IGAGRRLSSKTLISAITKLVDATSSRPDGRNIRTLIITEGDSAKALALNSLSSEQKKYCG 461

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDADVD 547
           V PLRGK+LNV +   ++++  +++ DL  +LG     +YR   +LRY+++++MTD D D
Sbjct: 462 VFPLRGKLLNVRNKNLKRLKTCKELQDLFLSLGLELGKEYRSPAELRYQRLLVMTDQDAD 521

Query: 548 GAHIASLLLTFFYQEMYDLIEQ--KHLFLISPPLFRIT---QGTKSVYAHDEEHKQKILE 602
           G+HI  L++  F      L++    ++ L S P+ +I    +  + +  H      +   
Sbjct: 522 GSHIKGLVINAFESLWPKLLQNNPGYISLFSTPIVKIKVSGKSKEVIAFHSFRDFHRW-- 579

Query: 603 EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKL 662
             + H   +     +KGLG    ++ KE   D  K  + ++ +  D    +      +  
Sbjct: 580 -QRAHPSARYTAKYYKGLGTSTTAEGKEYFADMEKNIM-QLTV--DARDHQLLDSVFDAA 635

Query: 663 MGTKADERFKFIQERASFIDDVG 685
              + + R +++ +  +F  ++ 
Sbjct: 636 ---EVEWRKEWMTKANAFQGEID 655


>gi|146082133|ref|XP_001464455.1| mitochondrial DNA topoisomerase II [Leishmania infantum JPCM5]
 gi|134068547|emb|CAM66843.1| mitochondrial DNA topoisomerase II [Leishmania infantum JPCM5]
          Length = 1236

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 129/683 (18%), Positives = 248/683 (36%), Gaps = 72/683 (10%)

Query: 45  DASSIRILEGLEPVRMRPGMYIGGTDEK-----------------------ALHHLFSEV 81
           DAS  + L  ++ V +RP MY+G  + +                        L  +  E+
Sbjct: 3   DASKYKKLTPIDHVLLRPEMYVGSIETQPTPMYIFDPEKGRMVWETMRVNQGLLKIVDEI 62

Query: 82  IDNAMDEVIAGYA----NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137
           + NA D +           I + +   G +TV ++G G+P+    +       E++   L
Sbjct: 63  LLNAADNINNSKGSVRQTYISIHISDTGEITVENDGAGLPI-VRSREHKMYIPEMVFGHL 121

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF--SRGIPLSPLEK 195
                ++N +   + G HG G  + N LS +  V        F   +     +  +P   
Sbjct: 122 LTSSNYNNDSTSTTAGRHGYGAKLTNILSTKFSVVCRTDGREFHMSWTDHMRMATAPRVN 181

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAG----FDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
           +   + K  TR+ F PD   FG             L K     A +  +++   +     
Sbjct: 182 RVDPKEKNVTRVKFMPDYAHFGFPNASISLDMKRVLHKRIMDLAAMFSKIEVRLNN---- 237

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
                      F F           L              T   G    +V +     + 
Sbjct: 238 ---------VPFGFRTFTDYARLYSLPGLDGSMPPEPFVYTSPNG----SVAYVPQLTQS 284

Query: 312 NPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILS 371
              I    N ++T  GGTH +     L   +         K    + ++ +      ++ 
Sbjct: 285 PKRIVGVVNGVVTYNGGTHCNAAMDILDSCLDS-LSKNFKKNGKVVDTNRVQRHFTVLVF 343

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           +   +P+F  Q+K +LVS      V     + +        +EA          +E    
Sbjct: 344 LIQTQPKFDSQSKARLVSTVTMPRVPKNTLEKYLE--RMPFLEAHVNSMDDQLANELNKE 401

Query: 432 RRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG---SAKQARNRSNQA 488
               R ++ KT I  +           +  +   L I EGDSA     ++  +  +    
Sbjct: 402 IGAGRRLSSKTLISAITKLVDATSSRPDGRNIRTLIITEGDSAKALALNSLSSEQKKYCG 461

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDADVD 547
           V PLRGK+LNV +   ++++  +++ DL  +LG     +YR   +LRY+++++MTD D D
Sbjct: 462 VFPLRGKLLNVRNKNLKRLKTCKELQDLFLSLGLELGKEYRSPAELRYQRLLVMTDQDAD 521

Query: 548 GAHIASLLLTFFYQEMYDLIEQ--KHLFLISPPLFRIT---QGTKSVYAHDEEHKQKILE 602
           G+HI  L++  F      L++    ++ L S P+ +I    +  + +  H      +   
Sbjct: 522 GSHIKGLVINAFESLWPKLLQNNPGYISLFSTPIVKIKVSGKSKEVIAFHSFRDFHRW-- 579

Query: 603 EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKL 662
             + H   +     +KGLG    ++ KE   D  K  + ++ +  D    +      +  
Sbjct: 580 -QRAHPSARYTAKYYKGLGTSTTAEGKEYFADMEKNIM-QLTV--DARDHQLLDSVFDAA 635

Query: 663 MGTKADERFKFIQERASFIDDVG 685
              + + R +++ +  +F  ++ 
Sbjct: 636 ---EVEWRKEWMTKANAFQGEID 655


>gi|4929497|gb|AAD34021.1|AF150876_1 DNA topoisomerase II [Leishmania donovani]
          Length = 1236

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 129/683 (18%), Positives = 248/683 (36%), Gaps = 72/683 (10%)

Query: 45  DASSIRILEGLEPVRMRPGMYIGGTDEK-----------------------ALHHLFSEV 81
           DAS  + L  ++ V +RP MY+G  + +                        L  +  E+
Sbjct: 3   DASKYKKLTPIDHVLLRPEMYVGSIETQPTPMYIFDPEKGRMVWETMRVNQGLLKIVDEI 62

Query: 82  IDNAMDEVIAGYA----NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137
           + NA D +           I + +   G +TV ++G G+P+    +       E++   L
Sbjct: 63  LLNAADNINNSKGSVRQTYISIHISDTGEITVENDGAGLPI-VRSREHKMYIPEMVFGHL 121

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF--SRGIPLSPLEK 195
                ++N +   + G HG G  + N LS +  V        F   +     +  +P   
Sbjct: 122 LTSSNYNNDSTSTTAGRHGYGAKLTNILSTKFSVVCRTDGREFHMSWTDHMRMATAPRVN 181

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAG----FDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
           +   + K  TR+ F PD   FG             L K     A +  +++   +     
Sbjct: 182 RVDPKEKNVTRVKFMPDYAHFGFPNASISLDMKRVLHKRIMDLAAMFSKIEVRLNN---- 237

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
                      F F           L              T   G    +V +     + 
Sbjct: 238 ---------VPFGFRTFTDYARLYSLPGLDGSMPPEPFVYTSPNG----SVAYVPQLTQS 284

Query: 312 NPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILS 371
              I    N ++T  GGTH +     L   +         K    + ++ +      ++ 
Sbjct: 285 PKRIVGVVNGVVTYNGGTHCNAAMDILDSCLDS-LSKNFKKNGKVVDTNRVQRHFTVLVF 343

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           +   +P+F  Q+K +LVS      V     + +        +EA          +E    
Sbjct: 344 LIQTQPKFDSQSKARLVSTVTMPRVPKNTLEKYLE--RMPFLEAHVNSMDDQLANELNKE 401

Query: 432 RRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG---SAKQARNRSNQA 488
               R ++ KT I  +           +  +   L I EGDSA     ++  +  +    
Sbjct: 402 IGAGRRLSSKTLISAITKLVDATSSRPDGRNIRTLIITEGDSAKALALNSLSSEQKKYCG 461

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDADVD 547
           V PLRGK+LNV +   ++++  +++ DL  +LG     +YR   +LRY+++++MTD D D
Sbjct: 462 VFPLRGKLLNVRNKNLKRLKTCKELQDLFLSLGLELGKEYRSPAELRYQRLLVMTDQDAD 521

Query: 548 GAHIASLLLTFFYQEMYDLIEQ--KHLFLISPPLFRIT---QGTKSVYAHDEEHKQKILE 602
           G+HI  L++  F      L++    ++ L S P+ +I    +  + +  H      +   
Sbjct: 522 GSHIKGLVINAFESLWPKLLQNNPGYISLFSTPIVKIKVSGKSKEVIAFHSFRDFHRW-- 579

Query: 603 EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKL 662
             + H   +     +KGLG    ++ KE   D  K  + ++ +  D    +      +  
Sbjct: 580 -QRAHPSARYTAKYYKGLGTSTTAEGKEYFADMEKNIM-QLTV--DARDHQLLDSVFDAA 635

Query: 663 MGTKADERFKFIQERASFIDDVG 685
              + + R +++ +  +F  ++ 
Sbjct: 636 ---EVEWRKEWMTKANAFQGEID 655


>gi|9624859|gb|AAF86355.1| DNA Topoisomerase II [Leishmania infantum]
          Length = 1236

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 129/683 (18%), Positives = 248/683 (36%), Gaps = 72/683 (10%)

Query: 45  DASSIRILEGLEPVRMRPGMYIGGTDEK-----------------------ALHHLFSEV 81
           DAS  + L  ++ V +RP MY+G  + +                        L  +  E+
Sbjct: 3   DASKYKKLTPIDHVLLRPEMYVGSIETQPTPMYIFDPEKGRMVWETMRVNQGLLKIVDEI 62

Query: 82  IDNAMDEVIAGYA----NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137
           + NA D +           I + +   G +TV ++G G+P+    +       E++   L
Sbjct: 63  LLNAADNINNSKGSVRQTYISIHISDTGEITVENDGAGLPI-VRSREHKMYIPEMVFGHL 121

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF--SRGIPLSPLEK 195
                ++N +   + G HG G  + N LS +  V        F   +     +  +P   
Sbjct: 122 LTSSNYNNDSTSTTAGRHGYGAKLTNILSTKFSVVCRTDGREFHMSWTDHMRMATAPRVN 181

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAG----FDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
           +   + K  TR+ F PD   FG             L K     A +  +++   +     
Sbjct: 182 RVDPKEKNVTRVKFMPDYAHFGFPNASISLDMKRVLHKRIMDLAAMFSKIEVRLNN---- 237

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
                      F F           L              T   G    +V +     + 
Sbjct: 238 ---------VPFGFRTFTDYARLYSLPGLDGSMPPEPFVYTSPNG----SVAYVPQLTQS 284

Query: 312 NPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILS 371
              I    N ++T  GGTH +     L   +         K    + ++ +      ++ 
Sbjct: 285 PKRIVGVVNGVVTYNGGTHCNAAMDILDSCLDS-LSKNFKKNGKVVDTNRVQRHFTVLVF 343

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           +   +P+F  Q+K +LVS      V     + +        +EA          +E    
Sbjct: 344 LIQTQPKFDSQSKARLVSTVTMPRVPKNTLEKYLE--RMPFLEAHVNSMDDQLANELNKE 401

Query: 432 RRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG---SAKQARNRSNQA 488
               R ++ KT I  +           +  +   L I EGDSA     ++  +  +    
Sbjct: 402 IGAGRRLSSKTLISAITKLVDATSSRPDGRNIRTLIITEGDSAKALALNSLSSEQKKYCG 461

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDADVD 547
           V PLRGK+LNV +   ++++  +++ DL  +LG     +YR   +LRY+++++MTD D D
Sbjct: 462 VFPLRGKLLNVRNKNLKRLKTCKELQDLFLSLGLELGKEYRSPAELRYQRLLVMTDQDAD 521

Query: 548 GAHIASLLLTFFYQEMYDLIEQ--KHLFLISPPLFRIT---QGTKSVYAHDEEHKQKILE 602
           G+HI  L++  F      L++    ++ L S P+ +I    +  + +  H      +   
Sbjct: 522 GSHIKGLVINAFESLWPKLLQNNPGYISLFSTPIVKIKVSGKSKEVIAFHSFRDFHRW-- 579

Query: 603 EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKL 662
             + H   +     +KGLG    ++ KE   D  K  + ++ +  D    +      +  
Sbjct: 580 -QRAHPSARYTAKYYKGLGTSTTAEGKEYFADMEKNIM-QLTV--DARDHQLLDSVFDAA 635

Query: 663 MGTKADERFKFIQERASFIDDVG 685
              + + R +++ +  +F  ++ 
Sbjct: 636 ---EVEWRKEWMTKANAFQGEID 655


>gi|322489879|emb|CBZ25140.1| mitochondrial DNA topoisomerase II [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 1236

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 129/686 (18%), Positives = 252/686 (36%), Gaps = 78/686 (11%)

Query: 45  DASSIRILEGLEPVRMRPGMYIGGTDEK-----------------------ALHHLFSEV 81
           DAS  + L  ++ V +RP MY+G  + +                        L  +  E+
Sbjct: 3   DASKYKKLTPIDHVLLRPEMYVGSIETQPTSMYIFDPEKGKMVWETMRVNQGLLKIVDEI 62

Query: 82  IDNAMDEVIAGYA----NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137
           + NA D +           I +++   G +TV ++G G+P+    +       E++   L
Sbjct: 63  LLNAADNITNSKGSVRQTYISINISDTGEITVENDGAGLPI-VRSREHKMYIPEMVFGHL 121

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF--SRGIPLSPLEK 195
                ++N +   + G HG G  + N LS +  V        F   +     +  +P   
Sbjct: 122 LTSSNYNNDSTSTTAGRHGYGAKLTNILSTKFSVVCRTDGREFHMSWTDHMRMATAPRVN 181

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAG----FDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
           +   + K  TR+ F PD   FG  +          L K     A +  +++   +     
Sbjct: 182 RVDPKEKNVTRVKFMPDYAHFGFPSASISLDMKRVLHKRIMDLAAMFSKIEVRLNN---- 237

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
                      F F           L              T   G    +V +     + 
Sbjct: 238 ---------VPFGFRSFTDYARLYSLSGLDGSMPPEPFVYTSSNG----SVAYVPQLTQS 284

Query: 312 NPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILS 371
              I S  N ++T  GGTH +     L   +         K    + ++ +      ++ 
Sbjct: 285 PKRIVSVVNGVVTYNGGTHCNAAMDILDSCLDS-LSKNFKKNGKVVDTNRVQRHFTVLVF 343

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH---YLVQNPIEATKLLEWVIERSEE 428
           +   +P+F  Q+K +LVS      V     + +     +L  +       L   + +   
Sbjct: 344 LVQAQPKFDSQSKARLVSTVTMPRVPKNTLEKYLERMPFLEAHVNSMDDQLTNELNK--- 400

Query: 429 RLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG---SAKQARNRS 485
                  R ++ KT I  +           +  +   L I EGDSA     ++  +  + 
Sbjct: 401 --EIGAGRRLSSKTLISSITKLVDATSSRSDGRNIRTLIITEGDSAKALALNSLSSEQKK 458

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDA 544
              V PLRGK+LNV +   ++++  +++ DL  +LG     +YR   +LRY+++++MTD 
Sbjct: 459 YCGVFPLRGKLLNVRNKNLKRLKTCKELQDLFLSLGLELGKEYRTLAELRYQRLLVMTDQ 518

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQ--KHLFLISPPLFRIT---QGTKSVYAHDEEHKQK 599
           D DG+HI  L++  F      L++    ++ L S P+ +I    +  + +  H      +
Sbjct: 519 DADGSHIKGLVINAFESLWPKLLQNNPGYISLFSTPIVKIKVNGKSKEVIAFHSFRDFHR 578

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
                + H   +     +KGLG    ++ KE   D  K  + ++ +  D    +      
Sbjct: 579 W---QRAHPSARYTAKYYKGLGTSTTAEGKEYFADMEKNIM-QLTV--DARDHQLLDSVF 632

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
           +     + + R +++ +  +F  ++ 
Sbjct: 633 DAA---EVEWRKEWMTKANAFQGEID 655


>gi|194339069|gb|ACF49450.1| GyrB [Amycolatopsis eurytherma]
          Length = 457

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 175/464 (37%), Positives = 258/464 (55%), Gaps = 19/464 (4%)

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           HHL  EV+DN++DE +AGYA  +EV+L  +G + VVD+GRGIPVE HP    KSTLEI+ 
Sbjct: 1   HHLIWEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVEEHP-VHKKSTLEIVH 59

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFD+ +Y +SGGLHGVG+SVVNALS  L V V+R    + Q +    P    E
Sbjct: 60  TVLHAGGKFDSESYAVSGGLHGVGVSVVNALSRALDVEVSRDGKKWRQHYDHSKPGPLEE 119

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK----- 249
                    GT  TF  DP IF     ++   + +  Q  A+L+  +      ++     
Sbjct: 120 V--GPAEGTGTSTTFWADPDIFET-TTYNMETVSRRLQEMAFLNKGLSITLRDERVTEAE 176

Query: 250 ---EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
              +   K    ++  +++PGGL+ +++    ++  I S I    ++  G     VE A+
Sbjct: 177 TEADADGKQARVKERVYHYPGGLEDFVKHINGSKDPIHSSIICFDSKGDG---LEVEVAM 233

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W     P + ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  DD+ 
Sbjct: 234 QWNNSFTPSVHTFANTINTHEGGTHEEGFRAALTRVVNAYARDKKLLKEKDENLSGDDVR 293

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                I+S+ + EP+F GQTKTKL + +A+  V++   +    +  +NP EA  ++   +
Sbjct: 294 EGLTAIISIKLAEPQFEGQTKTKLGNSEAKSFVQSKTNEWLSDWFERNPAEAKTIINKAL 353

Query: 424 ERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
             ++ R+  R+ R+ V RK A+    LPGKL DC        EL+IVEGDSAGGSAK+ R
Sbjct: 354 SSAQARMAARRARDLVRRKGALEIGGLPGKLKDCQSTNPEECELYIVEGDSAGGSAKEGR 413

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS 526
               QA+LP+RGKI+NV  A  +++  N ++  L+ ALG     
Sbjct: 414 ESRFQAILPIRGKIINVEKARIDRVLKNNEVQSLITALGTGIHD 457


>gi|323651010|ref|YP_004243653.1| ATP-hydrolyzing DNA topoisomerase subunit B [Bacillus subtilis
           subsp. natto]
 gi|323461650|dbj|BAJ77066.1| subunit B of ATP-hydrolyzing DNA topoisomerase [Bacillus subtilis
           subsp. natto]
          Length = 638

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 167/658 (25%), Positives = 291/658 (44%), Gaps = 45/658 (6%)

Query: 45  DASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL--- 101
           +   I+ L+  E  R +  ++ G  D    +H   E++ N  DEVI  + +   V+L   
Sbjct: 5   NQDKIKRLDDREKSREKIAIWYGSADNY--YHGLKEILANGTDEVINNF-DEGIVTLELF 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           D    + V D GRGIP++   +       E++  TL A  K++ S  + + G +GVG +V
Sbjct: 62  DDLQTVRVTDTGRGIPID--GETDGVKNYELLFRTLFASTKYETSE-QTTTGTNGVGATV 118

Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           +N  S   H+         + KF  G   +  L K++   ++ GT ITF+ DP+++    
Sbjct: 119 LNFTSLFFHIESYYDGYKHTLKFENGGELVQDLTKEKISEDRHGTVITFKLDPEVYPV-- 176

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
                + +     + +  G  K                E+E F++   ++ Y +  + + 
Sbjct: 177 -VTYDKDVVREIVRRFAIGSHKIKLIF-------IHNGEEETFHYES-VEEYFEELIGST 227

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
           +            ++   R  ++   +    +P   SY N     +GG+   G+   +  
Sbjct: 228 TTSPVITAPESLYEEDGERTQIKLTFST-TTDPIQESYLNLTYLSDGGSFNDGVITGIKT 286

Query: 341 GIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
              KYA   +   K   S  ++D+  S   +L     + EF  QTK        ++  + 
Sbjct: 287 FCNKYARENKLFPKGINSFTTEDIESSVSFVLVALSNKVEFKNQTKLSTDKKLYRKLAQR 346

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
                 + + ++N     K +  ++E  +   + +K ++  +K    K+   G       
Sbjct: 347 HTTQLLEVFQIENEKGFKKFINHLLEVQKHNTQSQKAKQQLKKKLSEKVDGIGNKVANLV 406

Query: 459 NIAHG---TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           +       +E+FI EG SA GS   AR+   QA  PLRGKILN   A    I  NQ I D
Sbjct: 407 DCKKHGKDSEIFIAEGQSALGSIVLARDAVYQAAYPLRGKILNCLKADYTTIFKNQIITD 466

Query: 516 LVQALGCRTRSQ--------YREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
           L++ LGC  ++         +   +LRY K+II TD D DGA IA L++T  Y+ M  LI
Sbjct: 467 LIKVLGCGIQTDKKNKDLDTFNINNLRYGKIIIATDQDSDGAQIACLIITMIYRLMPKLI 526

Query: 568 EQKHLFLISPPLFRITQGTKS-VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           E+ ++++   PL+ I     S +Y + E  K + +       KGK  I+R KGLGE+ A 
Sbjct: 527 EEGYVYIAQTPLYEIKLEDDSMIYFYSESEKDQKINTL----KGKYTIARCKGLGELDAV 582

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA-SFIDD 683
            + ETAM+   R L++V +       ++  +S+   MG+  D R ++I E    ++++
Sbjct: 583 TMAETAMNEETRNLIKVTVED----AENMIESLETWMGSSVDNRREYISENLYKYVEE 636


>gi|66009716|gb|AAY42699.1| GyrB [Burkholderia anthina]
          Length = 643

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 173/480 (36%), Positives = 259/480 (53%), Gaps = 27/480 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK-------- 196
            ++Y++SGGLHGVG+S VNALS  L +TV R       +F RG+    + +         
Sbjct: 1   QNSYKVSGGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQERVLEMVDGVEVSP 60

Query: 197 ---EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
                    RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E
Sbjct: 61  MLVTGDTENRGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE 119

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
                    F F GG+K +++   + ++ +   +F    EK G     VE A+ W +   
Sbjct: 120 DD-------FAFAGGVKGFVEFINKTKTNLHPTVFFANGEKDGV---GVEVAMQWNDSYN 169

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
             +  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +L
Sbjct: 170 ENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVL 229

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV + EP+F+ QTK KLVS + +  VE  +    + +L++ PI+A  +   ++E +  R 
Sbjct: 230 SVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARD 289

Query: 431 RRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK RE+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+
Sbjct: 290 AARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAI 349

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDG 548
           LPLRGK+LNV  A  +K+ +++QI+ LV ALGC    +    E LRY ++IIMTDADVDG
Sbjct: 350 LPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLEKLRYHRIIIMTDADVDG 409

Query: 549 AHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           AHI +LLLTF Y++M D+IE+ ++++  PPL++I  G    Y  D+      +      G
Sbjct: 410 AHIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQG 469


>gi|310831536|ref|YP_003970179.1| putative DNA topoisomerase IIA [Cafeteria roenbergensis virus
           BV-PW1]
          Length = 1101

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 136/677 (20%), Positives = 263/677 (38%), Gaps = 75/677 (11%)

Query: 45  DASSIRILEGLEPVRMRPGMYIGGTD---------------------EKALHHLFSEVID 83
             +    +   E + +RPGMYIG                           L+ ++ E+I 
Sbjct: 2   SKTKYDKVSQREHILLRPGMYIGSVSKNTEPMWLYEDNKMQKKDITFIPGLYKIYDEIIV 61

Query: 84  NAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGR-GIPVENHPKFPNKSTLEIILTTLHAG 140
           NA D  I     N IE+ ++ + G+ +V +NG  GIPV+ H +        +I   L   
Sbjct: 62  NARDHSINDKSCNSIEIEVNTDEGYFSVYNNGDEGIPVKEH-ETHKTLIPSMIFGELLTS 120

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELH--VTVARQNTIFSQKFSRGIPLSPLEKKEK 198
             +D+S    +GG++G+G    N  S +    V        F Q +   + +    K   
Sbjct: 121 SNYDDSKKRTTGGMNGLGSKCSNVWSKKFEIEVQDKTNKKHFHQIWEDNMSVVNKPKVTS 180

Query: 199 VRNKRGTRITFRPDPKIFGDKA-GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
              K   ++T  PD + F  K+         K     A  + +VK  ++      +    
Sbjct: 181 KSTKSFVKVTCYPDLERFKIKSLKKHLPLFEKRAYDLALTTEKVKVKFNGSLINVKNMQD 240

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS 317
                F          +    +   +                          +   E  S
Sbjct: 241 FMDLYF------PDTAKIVDTSNPRMHVGCIYL------------------PDVGHESIS 276

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREP 377
           Y N I +  GGTH + +   + + +     + +  + I I    +  + V  ++  I  P
Sbjct: 277 YVNGICSYRGGTHCNYIVDMVVKSLIN-DYIKKKDKDIKISPALIKDNLVFFINSVIDNP 335

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
            F+ Q+K  L +        +       +      +  + +++ +I  ++ +   +  + 
Sbjct: 336 SFSSQSKETLTTKP-----SDFGTVYKLNKTFMTKLSKSGIIKQIISLAKFKESVKMTKT 390

Query: 438 VNRKTAIRKLRLPGKLAD-CSQNIAHGTELFIVEGDSAGGSAKQ---ARNRSNQAVLPLR 493
             RKT + +     + A+      AH   L++ EGDSA         +++R+     PL+
Sbjct: 391 DGRKTTVIRGIPKLEDANKAGTKDAHKCGLYLAEGDSALSMILSGLSSKDRNFYGAFPLK 450

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED----LRYEKVIIMTDADVDGA 549
           GK+LNV  A  ++I  N +I +L + LG R   +Y  ++    LRY KVII+ D+DVDG+
Sbjct: 451 GKLLNVREASVKQIMGNDEISNLKKILGLRNEFKYEMDEEFNTLRYGKVIILCDSDVDGS 510

Query: 550 HIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           HI  L+L  F+    +L+++   +  ++ P+ + T+G + +  ++         +   + 
Sbjct: 511 HIKGLILNMFHSMWPNLLKREGFITTMNTPIVKATKGKEILKFYNLTDYDNWRND---NN 567

Query: 609 KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK---DTQDSINKLMGT 665
                I  +KGLG   + + KE   D    +L+    + + +  K    + D+I      
Sbjct: 568 TKGYYIKYYKGLGTSDSKEAKEYFQDIEG-SLIDYTWDTNKSKTKGKTVSDDAIELAFSK 626

Query: 666 K-ADERFKFIQERASFI 681
           + AD+R +++      +
Sbjct: 627 ELADKRKEWLINYDKNL 643


>gi|194339115|gb|ACF49473.1| GyrB [Amycolatopsis thermoflava]
          Length = 450

 Score =  310 bits (795), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 173/457 (37%), Positives = 256/457 (56%), Gaps = 19/457 (4%)

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133
           LHHL  EV+DN++DE +AGYA  +EV+L  +G + VVD+GRGIPVE HP    KSTLEI+
Sbjct: 1   LHHLIWEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVEEHP-VHKKSTLEIV 59

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
            T LHAGGKFD+ +Y +SGGLHGVG+SVVNALS  L V V+R    + Q +    P    
Sbjct: 60  HTVLHAGGKFDSESYAVSGGLHGVGVSVVNALSRALDVEVSRDGKKWRQHYDHSKPGPLE 119

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---- 249
           E         GT  TF  DP IF     ++   + +  Q  A+L+  +      ++    
Sbjct: 120 EV--GPAEGTGTSTTFWADPDIFET-TTYNMETVSRRLQEMAFLNKGLSITLRDERVTEA 176

Query: 250 ----EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
               +   K    ++  +++PGGL+ +++    ++  I S I    ++  G     VE A
Sbjct: 177 ETEADADGKQARVKERVYHYPGGLEDFVKHINGSKDPIHSSIICFDSKGDG---LEVEVA 233

Query: 306 IAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDL 362
           + W     P + ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  DD+
Sbjct: 234 MQWNNSFTPSVHTFANTINTHEGGTHEEGFRAALTRVVNAYARDKKLLKEKDENLSGDDV 293

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
                 I+S+ + EP+F GQTKTKL + +A+  V++   +    +  +NP EA  ++   
Sbjct: 294 REGLTAIISIKLAEPQFEGQTKTKLGNSEAKSFVQSKTNEWLSDWFERNPAEAKTIINKA 353

Query: 423 IERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
           +  ++ R+  R+ R+ V RK A+    LPGKL DC        EL+IVEGDSAGGSAK+ 
Sbjct: 354 LSSAQARMAARRARDLVRRKGALEIGGLPGKLKDCQSTNPEECELYIVEGDSAGGSAKEG 413

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
           R    QA+LP+RGKI+NV  A  +++  N ++  L+ 
Sbjct: 414 RESRFQAILPIRGKIINVEKARIDRVLKNNEVQSLIT 450


>gi|68138694|gb|AAY86002.1| GyrB [Burkholderia cenocepacia]
          Length = 646

 Score =  310 bits (794), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 175/481 (36%), Positives = 262/481 (54%), Gaps = 29/481 (6%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSP 192
            ++Y++SGGLHGVG+S VNALS  L +TV R       +F RG+             +SP
Sbjct: 1   QNSYKVSGGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLEVVDGVEVSP 60

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
           +       N RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   
Sbjct: 61  MLVTGDTEN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGK 118

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
           E         F F GG+K +++   + ++ +   +F    EK G     VE A+ W +  
Sbjct: 119 EDD-------FAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGV---GVEVAMQWNDSY 168

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369
              +  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +
Sbjct: 169 NENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCV 228

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           LSV + EP+F+ QTK KLVS + +  VE  +    + +L++ PI+A  +   ++E +  R
Sbjct: 229 LSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARAR 288

Query: 430 LRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
              RK RE+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA
Sbjct: 289 DAARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQA 348

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVD 547
           +LPLRGK+LNV  A  +K+ +++QI+ LV ALGC    +    + LRY ++IIMTDADVD
Sbjct: 349 ILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVD 408

Query: 548 GAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607
           GAHI +LLLTF Y++M D+IE+ ++++  PPL++I  G    Y  D+      +      
Sbjct: 409 GAHIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQ 468

Query: 608 G 608
           G
Sbjct: 469 G 469


>gi|19909581|dbj|BAB86986.1| DNA gyrase subunit B [Caulobacter leidyia]
          Length = 471

 Score =  310 bits (794), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 166/480 (34%), Positives = 261/480 (54%), Gaps = 26/480 (5%)

Query: 78  FSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137
             EV DNA+DE +AG+ + I + L+ +G ++V DNGRGIP   H +    S  E+I+T L
Sbjct: 1   VFEVSDNAIDEALAGHCDKIIIQLNPDGSVSVEDNGRGIPTGIHSE-EGVSAAEVIMTQL 59

Query: 138 HAGGKF----DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           HAGGKF    D++ Y++SGGLHGVG+SVVNALS+ L + + R       +F+ G   +PL
Sbjct: 60  HAGGKFENTSDDNAYKVSGGLHGVGVSVVNALSEWLDLNIWRDGEEHYMRFAYGDATAPL 119

Query: 194 EKKEKVRN-KRGTRITFRPDPK-------IFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
           +        K+GTR+TF    +        F ++  +D  +L    +  A+L+  V+   
Sbjct: 120 KVIGTAPEGKKGTRVTFLASTEKTPGDGGTFKNQIEYDFEKLEHRYRELAFLNSGVRLFL 179

Query: 246 SCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT-HRGTVEW 304
              +    K         Y+ GG+  +++    N+  +  +       +        +EW
Sbjct: 180 RDARHEDVKEVE-----LYYEGGIAAFVKWLDRNKQPLMPDPVAIAGTRDDVTIDVALEW 234

Query: 305 AIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDL 362
             ++      +  + N I   +GGTH +  R ALTR I  YA+ +    K  +++  DD+
Sbjct: 235 NDSY---YENVLCFTNNIPQRDGGTHLAAFRAALTRTINNYADKSGALKKEKVTLTGDDM 291

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
                 I+SV + +P+F+ QTK KLVS + ++ +E+ + D    YL +NP  A  +++ V
Sbjct: 292 REGLTAIVSVKLPDPKFSSQTKDKLVSSEVRQPLESLMADKLAEYLEENPANARMIIQKV 351

Query: 423 IERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
           I+ +  R   +K RE+ R+   +    LPGKLADC +     +ELF+VEGDSAGGSAKQ 
Sbjct: 352 IDAAAAREAAKKARELTRRKGVMDIASLPGKLADCQERDPAKSELFLVEGDSAGGSAKQG 411

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVII 540
           R+R  QA+LPLRGKILNV  A  +++ ++++I  L+QA+G          E LRY K++I
Sbjct: 412 RDRHFQAILPLRGKILNVERARFDRMLSSREIGTLIQAMGTGIGRDDFNLEKLRYHKIVI 471


>gi|221316456|ref|ZP_03598261.1| DNA topoisomerase (ATP-hydrolyzing) [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
          Length = 638

 Score =  310 bits (794), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 167/658 (25%), Positives = 291/658 (44%), Gaps = 45/658 (6%)

Query: 45  DASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL--- 101
           +   I+ L+  E  R +  ++ G  D    +H   E++ N  DEVI  + +   V+L   
Sbjct: 5   NQDKIKRLDDREKSREKIAIWYGSADNY--YHGLKEILANGTDEVINNF-DEGIVTLELF 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           D    + V D GRGIP++   +       E++  TL A  K++ S  + + G +GVG +V
Sbjct: 62  DDLQTVRVTDTGRGIPID--GETDGVKNYELLFRTLFASTKYETSE-QTTTGTNGVGATV 118

Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           +N  S   H+         + KF  G   +  L K++   ++ GT ITF+ DP+++    
Sbjct: 119 LNFTSLFFHIESYYDGYKHALKFENGGELVQDLTKEKISEDRHGTVITFKLDPEVYPV-- 176

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
                + +     + +  G  K                E+E F++   ++ Y +  + + 
Sbjct: 177 -VTYDKDVVREIVRRFAIGSHKIKLIF-------IHNGEEETFHYES-VEEYFEELIGST 227

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
           +            ++   R  ++   +    +P   SY N     +GG+   G+   +  
Sbjct: 228 TTSPVITAPESLYEEDGERTQIKLTFST-TTDPIQESYLNLTYLSDGGSFNDGVITGIKT 286

Query: 341 GIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
              KYA   +   K   S  ++D+  S   +L     + EF  QTK        ++  + 
Sbjct: 287 FCNKYARENKLFPKGINSFTTEDIESSVSFVLVALSNKVEFKNQTKLSTDKKLYRKLAQR 346

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
                 + + ++N     K +  ++E  +   + +K ++  +K    K+   G       
Sbjct: 347 HTTQLLEVFQIENEKGFKKFVNHLLEVQKHNTQSQKAKQQLKKKLSEKVDGIGNKVANLV 406

Query: 459 NIAHG---TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           +       +E+FI EG SA GS   AR+   QA  PLRGKILN   A    I  NQ I D
Sbjct: 407 DCKKHGKDSEIFIAEGQSALGSIVLARDAVYQAAYPLRGKILNCLKADYTTIFKNQIITD 466

Query: 516 LVQALGCRTRSQ--------YREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
           L++ LGC  ++         +   +LRY K+II TD D DGA IA L++T  Y+ M  LI
Sbjct: 467 LIKVLGCGIQTDKKNKDLDTFNINNLRYGKIIIATDQDSDGAQIACLIITMIYRLMPKLI 526

Query: 568 EQKHLFLISPPLFRITQGTKS-VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           E+ ++++   PL+ I     S +Y + E  K + +       KGK  I+R KGLGE+ A 
Sbjct: 527 EEGYVYIAQTPLYEIKLEDDSMIYFYSESEKDQKINTL----KGKYTIARCKGLGELDAV 582

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA-SFIDD 683
            + ETAM+   R L++V +       ++  +S+   MG+  D R ++I E    ++++
Sbjct: 583 TMAETAMNEETRNLIKVTVED----AENMIESLETWMGSSVDNRREYISENLYKYVEE 636


>gi|296454311|ref|YP_003661454.1| DNA topoisomerase [Bifidobacterium longum subsp. longum JDM301]
 gi|296183742|gb|ADH00624.1| DNA topoisomerase (ATP-hydrolyzing) [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 771

 Score =  310 bits (794), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 147/469 (31%), Positives = 219/469 (46%), Gaps = 38/469 (8%)

Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR-------- 299
           D    E+   P   EF   GG+K ++    +   +       G+   K   +        
Sbjct: 301 DGAFGEQPAHPRVVEFLHTGGVKDFVDFLSKGEPISDIWRIQGEGTYKEETQAVGEGGEL 360

Query: 300 --------GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
                     V+ A+ W       I S+ N + T  GGTH  G   A+T+ I+K  E   
Sbjct: 361 HAQEIERTCGVDIALRWVNGYDTTIMSFVNIVETPGGGTHVDGFMNAITKQIRKAVEDNA 420

Query: 351 NKRAISII-------SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDP 403
            K  +++         DD+    V +++  + EP+F GQTK  L +   +  V       
Sbjct: 421 RKLKVNMKDSAMKVERDDIQAGLVAVVTARVAEPQFQGQTKDVLGTAQVKPIVTRLTDKQ 480

Query: 404 FDHYLVQNPIEATKL----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           F   +  +     +     LE ++     R++ RK +E   RK A+    +P KL+DC  
Sbjct: 481 FGEMITGSKRGYKEQSGRVLEKIVGEMHARIQSRKAKEVTRRKNALESASMPAKLSDCQP 540

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 ELFIVEGDSA G+AK ARN   QA+LP+RGKILNV  A   ++ +N++   ++Q
Sbjct: 541 GNDDVAELFIVEGDSALGTAKAARNAGFQALLPIRGKILNVQKASITQMLSNKECAAIIQ 600

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
            +G  +   +  E  RY K+I+MTDADVDGAHI  LLLT FY+ M  LIE  +++   PP
Sbjct: 601 VVGAGSGQSFDIEQSRYHKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGYVYAAVPP 660

Query: 579 LFRI----TQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAM 633
           L RI    +   + +Y + ++     L +  KKH     +I R+KGLGEM A QL +T M
Sbjct: 661 LHRIALTGSHKGEYIYTYSDDELAGKLADLDKKHIGYNDDIQRYKGLGEMDADQLADTTM 720

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           D   R L R+ +           +  + LMG     R +FI + A   D
Sbjct: 721 DPRTRMLRRIRMED----AAQASEIFSLLMGDDVPPRKQFIVDNADDFD 765



 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 94/234 (40%), Positives = 123/234 (52%), Gaps = 26/234 (11%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
             + Y A  + +LEGL+ VR RPGMYIG TD + L H   E+IDN++DE +AG+ N I V
Sbjct: 2   PKEEYGAKDLAVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNSVDEALAGFCNDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G + V DNGRGIPV+  PK    S +E++LT LHAG KF NS+Y   GGLHGVG 
Sbjct: 62  TLHTDGSVEVADNGRGIPVDKEPK-TGLSGVEVVLTKLHAGAKFGNSSYNAVGGLHGVGS 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPL------------------------SPLEK 195
           SVVNALS  L V V R        F +G P                         + LE 
Sbjct: 121 SVVNALSSRLDVEVDRDGKTHHMTFHQGHPGVYTDADPANPSPDSPFKRTRKNRPTELEI 180

Query: 196 KEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
             KV     GTRI +  DP+IF   A F   +L+   +  ++L   +K     +
Sbjct: 181 IGKVSPKTTGTRIRYWYDPEIFNKTAEFSYEQLIDRVRQTSFLVPGLKITIVDE 234


>gi|239735455|dbj|BAH70494.1| gyrase B subunit [Cardinium endosymbiont of Ixodes scapularis]
          Length = 478

 Score =  310 bits (793), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 177/484 (36%), Positives = 269/484 (55%), Gaps = 17/484 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
             TY+ISGGLHGVG+S VNALS  L VTV R   I+ Q +++GIP  P++        RG
Sbjct: 1   KDTYKISGGLHGVGVSCVNALSTHLEVTVYRDGKIYKQAYAQGIPSYPVKAVG-TTELRG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PD  IF     ++   ++   Q  AYL+  +       +E+ E+   P +++F+
Sbjct: 60  TTVHFVPDSTIFTTTI-YNLHTIVGRLQELAYLNVGLTMELEDRRELDEQG-NPFQQKFH 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
             GGL  +      N+  I       + EK       V+ A+ +       + SY N I 
Sbjct: 118 SQGGLLEFAAHLDSNKVSIMPTPILVEGEKNNV---VVQVAMTYNTGYSETVVSYVNNIH 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGG H +G + ALTR +K Y++ +    K  I II DD       ++SV + EP+F G
Sbjct: 175 TIEGGMHVTGFKRALTRTLKNYSDKSGLLEKAKIEIIGDDFREGLTAVISVKVAEPQFEG 234

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNR 440
           QTKTKL + + Q  VE+ + +   +YL ++P EA  ++  VI      +  R+ +  V R
Sbjct: 235 QTKTKLGNAEVQGAVESCVAEVLHYYLEEHPKEAKLIINKVIVAAQARQAARKAREMVQR 294

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K  +    LPGKLADCS+      ELF+VEGDSAGG+AK  RNR  QA+LPL+GKILNV 
Sbjct: 295 KNVLMSSSLPGKLADCSERDPALCELFLVEGDSAGGTAKMGRNRRFQAILPLKGKILNVE 354

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLL 555
            A + KI +N+Q+ +++ ALG    +   ++      LRY K++IMTDADVDG+HI +L+
Sbjct: 355 KAQAYKIYDNEQVRNMITALGVAIETGESDQASNLDKLRYHKIVIMTDADVDGSHIRTLI 414

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEE--FKKHGKGKIE 613
           LTFF++ M  +IE+ +L++ SPPL+ + +  ++ Y   +  K+  + +   K      + 
Sbjct: 415 LTFFFRYMRQIIEKGYLYIASPPLYLVKRDKEAHYCWTDAEKEGYVAQLSLKDGKTDAVS 474

Query: 614 ISRF 617
           + R+
Sbjct: 475 VQRY 478


>gi|225550550|ref|ZP_03771499.1| topoisomerase IV subunit b [Ureaplasma urealyticum serovar 2 str.
           ATCC 27814]
 gi|225379704|gb|EEH02066.1| topoisomerase IV subunit b [Ureaplasma urealyticum serovar 2 str.
           ATCC 27814]
          Length = 406

 Score =  310 bits (793), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 147/402 (36%), Positives = 216/402 (53%), Gaps = 20/402 (4%)

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350
           K   ++  VE A  + ++N   + S+ N++ T EGG HE+  + ALT  +  YA      
Sbjct: 6   KNTINKIDVEVAFQYSDQNNEIMVSFANSVKTSEGGVHENAFKNALTSVVNNYARKHDLL 65

Query: 351 NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
            ++  ++  DD+      ++S+ I E    + GQTK KL + +A   V+  + D F  +L
Sbjct: 66  KEKDKNLEGDDIREGLSSVISLRIPESLISYEGQTKNKLFTPEANEAVKKTIEDNFSFWL 125

Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK--LRLPGKLADCSQNIAHGTEL 466
            +N  +A  L+   I   + +L  ++ RE  +K    K    + GKL           EL
Sbjct: 126 EENKTQALDLVNRAIVARDAKLAAKRAREETKKVKKIKEERGMGGKLTPAQSKDPTLNEL 185

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS 526
           F+VEGDSAGGSAK  RN+  QA+LPLRGK+LNV  A    +  N++I  +   LG    +
Sbjct: 186 FLVEGDSAGGSAKLGRNKKYQAILPLRGKVLNVLKARLVDVLKNEEIASIFTCLGTGIGA 245

Query: 527 QYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG- 585
           ++  + L+Y K+IIMTDAD DG+HI  LLLT FY+ M  LIE  ++++  PPL+++T   
Sbjct: 246 EFDLKKLKYHKIIIMTDADTDGSHIQVLLLTLFYRFMRPLIENGNIYIALPPLYKLTNKN 305

Query: 586 -TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644
             K  YA D+    ++ +E K       EI R+KGLGEM A QL ET MD +KR LLRV 
Sbjct: 306 TKKFFYAWDDVELGQLKKEQKN-----YEIQRYKGLGEMNADQLFETTMDPSKRLLLRVN 360

Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASF--IDDV 684
           IN  L      +  IN LMG     R ++I     F  ID++
Sbjct: 361 INDIL----QAERQINTLMGNDVSIRRQWIDNNIDFSVIDEL 398


>gi|227547667|ref|ZP_03977716.1| DNA gyrase subunit B [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|227211922|gb|EEI79818.1| DNA gyrase subunit B [Bifidobacterium longum subsp. infantis ATCC
           55813]
          Length = 772

 Score =  310 bits (793), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 147/469 (31%), Positives = 219/469 (46%), Gaps = 38/469 (8%)

Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR-------- 299
           D    E+   P   EF   GG+K ++    +   +       G+   K   +        
Sbjct: 302 DGAFGEQPAHPRVVEFLHTGGVKDFVDFLSKGEPISDIWRIQGEGTYKEETQAVGEGGEL 361

Query: 300 --------GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
                     V+ A+ W       I S+ N + T  GGTH  G   A+T+ I+K  E   
Sbjct: 362 HAQEIERTCGVDIALRWVNGYDTTIMSFVNIVETPGGGTHVDGFMNAITKQIRKAVEDNA 421

Query: 351 NKRAISII-------SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDP 403
            K  +++         DD+    V +++  + EP+F GQTK  L +   +  V       
Sbjct: 422 RKLKVNMKDSAMKVERDDIQAGLVAVVTARVAEPQFQGQTKDVLGTAQVKPIVTRLTDKQ 481

Query: 404 FDHYLVQNPIEATKL----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           F   +  +     +     LE ++     R++ RK +E   RK A+    +P KL+DC  
Sbjct: 482 FGEMITGSKRGYKEQSGRVLEKIVGEMHARIQSRKAKEVTRRKNALESASMPAKLSDCQP 541

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 ELFIVEGDSA G+AK ARN   QA+LP+RGKILNV  A   ++ +N++   ++Q
Sbjct: 542 GNDDVAELFIVEGDSALGTAKAARNAGFQALLPIRGKILNVQKASITQMLSNKECAAIIQ 601

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
            +G  +   +  E  RY K+I+MTDADVDGAHI  LLLT FY+ M  LIE  +++   PP
Sbjct: 602 VVGAGSGQSFDIEQSRYHKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGYVYAAVPP 661

Query: 579 LFRI----TQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAM 633
           L RI    +   + +Y + ++     L +  KKH     +I R+KGLGEM A QL +T M
Sbjct: 662 LHRIALTGSHKGEYIYTYSDDELAGKLADLDKKHIGYNDDIQRYKGLGEMDADQLADTTM 721

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           D   R L R+ +           +  + LMG     R +FI + A   D
Sbjct: 722 DPRTRMLRRIRMED----AAQASEIFSLLMGDDVPPRKQFIVDNADDFD 766



 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 94/234 (40%), Positives = 123/234 (52%), Gaps = 26/234 (11%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
             + Y A  + +LEGL+ VR RPGMYIG TD + L H   E+IDN++DE +AG+ N I V
Sbjct: 2   PKEEYGAKDLAVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNSVDEALAGFCNDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G + V DNGRGIPV+  PK    S +E++LT LHAG KF NS+Y   GGLHGVG 
Sbjct: 62  TLHTDGSVEVADNGRGIPVDKEPK-TGLSGVEVVLTKLHAGAKFGNSSYNAVGGLHGVGS 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPL------------------------SPLEK 195
           SVVNALS  L V V R        F +G P                         + LE 
Sbjct: 121 SVVNALSSRLDVEVDRDGKTHHMTFHQGHPGVYTDADPANPSPDSPFKRTRKNRPTELEI 180

Query: 196 KEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
             KV     GTRI +  DP+IF   A F   +L+   +  ++L   +K     +
Sbjct: 181 IGKVSPKTTGTRIRYWYDPEIFNKTAEFSYEQLIDRVRQTSFLVPALKITIIDE 234


>gi|23465987|ref|NP_696590.1| DNA gyrase subunit B [Bifidobacterium longum NCC2705]
 gi|23326703|gb|AAN25226.1| DNA gyrase subunit B [Bifidobacterium longum NCC2705]
          Length = 772

 Score =  310 bits (793), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 147/469 (31%), Positives = 219/469 (46%), Gaps = 38/469 (8%)

Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR-------- 299
           D    E+   P   EF   GG+K ++    +   +       G+   K   +        
Sbjct: 302 DGAFGEQPAHPRVVEFLHTGGVKDFVDFLSKGEPISDIWRIQGEGTYKEETQAVGEGGEL 361

Query: 300 --------GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
                     V+ A+ W       I S+ N + T  GGTH  G   A+T+ I+K  E   
Sbjct: 362 HAQEIERTCGVDIALRWVNGYDTTIMSFVNIVETPGGGTHVDGFMNAITKQIRKAVEDNA 421

Query: 351 NKRAISII-------SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDP 403
            K  +++         DD+    V +++  + EP+F GQTK  L +   +  V       
Sbjct: 422 RKLKVNMKDSAMKVERDDIQAGLVAVVTARVAEPQFQGQTKDVLGTAQVKPIVTRLTDKQ 481

Query: 404 FDHYLVQNPIEATKL----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           F   +  +     +     LE ++     R++ RK +E   RK A+    +P KL+DC  
Sbjct: 482 FGEMITGSKRGYKEQSGRVLEKIVGEMHARIQSRKAKEVTRRKNALESASMPAKLSDCQP 541

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 ELFIVEGDSA G+AK ARN   QA+LP+RGKILNV  A   ++ +N++   ++Q
Sbjct: 542 GNDDVAELFIVEGDSALGTAKAARNAGFQALLPIRGKILNVQKASITQMLSNKECAAIIQ 601

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
            +G  +   +  E  RY K+I+MTDADVDGAHI  LLLT FY+ M  LIE  +++   PP
Sbjct: 602 VVGAGSGQSFDIEQSRYHKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGYVYAAVPP 661

Query: 579 LFRI----TQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAM 633
           L RI    +   + +Y + ++     L +  KKH     +I R+KGLGEM A QL +T M
Sbjct: 662 LHRIALTGSHKGEYIYTYSDDELAGKLADLDKKHIGYNDDIQRYKGLGEMDADQLADTTM 721

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           D   R L R+ +           +  + LMG     R +FI + A   D
Sbjct: 722 DPRTRMLRRIRMED----AAQASEIFSLLMGDDVPPRKQFIVDNADDFD 766



 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 94/234 (40%), Positives = 123/234 (52%), Gaps = 26/234 (11%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
             + Y A  + +LEGL+ VR RPGMYIG TD + L H   E+IDN++DE +AG+ N I V
Sbjct: 2   PKEEYGAKDLAVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNSVDEALAGFCNDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G + V DNGRGIPV+  PK    S +E++LT LHAG KF NS+Y   GGLHGVG 
Sbjct: 62  TLHTDGSVEVADNGRGIPVDKEPK-TGLSGVEVVLTKLHAGAKFGNSSYNAVGGLHGVGS 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPL------------------------SPLEK 195
           SVVNALS  L V V R        F +G P                         + LE 
Sbjct: 121 SVVNALSSRLDVEVDRDGKTHHMTFHQGHPGVYTDADPANPSPDSPFKRTRKNRPTELEI 180

Query: 196 KEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
             KV     GTRI +  DP+IF   A F   +L+   +  ++L   +K     +
Sbjct: 181 IGKVSPKTTGTRIRYWYDPEIFNKTAEFSYEQLIDRVRQTSFLVPGLKITIIDE 234


>gi|194339117|gb|ACF49474.1| GyrB [Amycolatopsis tolypomycina]
          Length = 458

 Score =  310 bits (793), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 171/462 (37%), Positives = 261/462 (56%), Gaps = 19/462 (4%)

Query: 79  SEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLH 138
            EV+DN++DE +AGYA  +EV+L  +G + VVD+GRGIPV+ HPK  NK T+E++LT LH
Sbjct: 1   QEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVDMHPK-ENKPTIEVVLTQLH 59

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+ +Y +SGGLHGVGISVVNALS +L   V      + Q+++  +P  PLE    
Sbjct: 60  AGGKFDSDSYAVSGGLHGVGISVVNALSTKLLAEVKYGGRSWRQEYTNQVP-GPLEDLGP 118

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------E 250
                GT +TF  D  IF     ++   + +  Q  A+L+  +      ++        +
Sbjct: 119 ATE-TGTTMTFWADGDIFET-TTYNFETISRRLQEMAFLNKGLTLSLRDERVADEETEED 176

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
              K    +++ + +PGGL+ +++    ++  I   + +   +  G     VE A+ W  
Sbjct: 177 AEGKVARVKEKVYCYPGGLEDFVKHINGSKDPIHPSVISFDAKGTG---LEVEVAMQWNT 233

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
              P + ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  DD+     
Sbjct: 234 GFTPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYARDKKLLKEKDANLTGDDVREGLA 293

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            I+S+ + EP+F GQTKTKL + +A+  V+    +    +  +NP EA  ++   I  ++
Sbjct: 294 AIVSIKLGEPQFEGQTKTKLGNSEAKTFVQQQSNEWLADWFERNPTEAKTIINKSISSAQ 353

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R+  RK R+ V RK A+    LPGKL DC        EL+IVEGDSAGGSAK+ R+   
Sbjct: 354 ARMAARKARDLVRRKGALEIGGLPGKLKDCRSTNPAECELYIVEGDSAGGSAKEGRDSMY 413

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528
           QA+LP+RGKI+NV  A  +++  N ++  L+ ALG     ++
Sbjct: 414 QAILPIRGKIINVEKARIDRVLKNTEVQSLITALGTGIHDEF 455


>gi|156312273|ref|XP_001617798.1| hypothetical protein NEMVEDRAFT_v1g225783 [Nematostella vectensis]
 gi|156195862|gb|EDO25698.1| predicted protein [Nematostella vectensis]
          Length = 281

 Score =  309 bits (792), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 116/290 (40%), Positives = 177/290 (61%), Gaps = 15/290 (5%)

Query: 403 PFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIA 461
               YL +NP +A  +++ VI  ++ R   RK RE+  RKT +    LPGKL+DCS+   
Sbjct: 1   MLTDYLEENPNDAKTIVQKVILAAQARHAARKAREMVQRKTVMSIGGLPGKLSDCSETDP 60

Query: 462 HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
              E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV  A   K+  N++I ++  ALG
Sbjct: 61  AQCEIFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFENEEIKNMFTALG 120

Query: 522 CRTRSQYREEDLR-----YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
               ++     L      Y KV+IM DADVDG+HIA+L+LTFF++ M ++IEQ ++++ +
Sbjct: 121 VSIGTEEDPRALNLSKVRYHKVVIMCDADVDGSHIATLILTFFFRYMREMIEQGYVYIAT 180

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           PPL+ + +G K  YA D+  +  I ++      G + I R+KGLGEM A QL +T M+  
Sbjct: 181 PPLYLVKKGQKREYAWDDNQRDLIAQKMG----GGVTIQRYKGLGEMNAEQLWDTTMNPE 236

Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
            RTL +V I+    ++ +     + LMG +   R +FI++ A +  ++  
Sbjct: 237 FRTLRQVTID----NMTEADRVFSMLMGDEVPPRREFIEKNAKYA-NIDA 281


>gi|317482449|ref|ZP_07941466.1| hypothetical protein HMPREF0177_00859 [Bifidobacterium sp.
           12_1_47BFAA]
 gi|291516755|emb|CBK70371.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Bifidobacterium longum subsp. longum F8]
 gi|316916109|gb|EFV37514.1| hypothetical protein HMPREF0177_00859 [Bifidobacterium sp.
           12_1_47BFAA]
          Length = 772

 Score =  309 bits (792), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 147/469 (31%), Positives = 219/469 (46%), Gaps = 38/469 (8%)

Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR-------- 299
           D    E+   P   EF   GG+K ++    +   +       G+   K   +        
Sbjct: 302 DGAFGEQPAHPRVVEFLHTGGVKDFVDFLSKGEPISDIWRIQGEGTYKEETQAVGEGGEL 361

Query: 300 --------GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
                     V+ A+ W       I S+ N + T  GGTH  G   A+T+ I+K  E   
Sbjct: 362 HAQEIERTCGVDIALRWVNGYDTTIMSFVNIVETPGGGTHVDGFMNAITKQIRKAVEDNA 421

Query: 351 NKRAISII-------SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDP 403
            K  +++         DD+    V +++  + EP+F GQTK  L +   +  V       
Sbjct: 422 RKLKVNMKDSAMKVERDDIQAGLVAVVTARVAEPQFQGQTKDVLGTAQVKPIVTRLTDKQ 481

Query: 404 FDHYLVQNPIEATKL----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           F   +  +     +     LE ++     R++ RK +E   RK A+    +P KL+DC  
Sbjct: 482 FGEMITGSKRGYKEQSGRVLEKIVGEMHARIQSRKAKEVTRRKNALESASMPAKLSDCQP 541

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 ELFIVEGDSA G+AK ARN   QA+LP+RGKILNV  A   ++ +N++   ++Q
Sbjct: 542 GNDDVAELFIVEGDSALGTAKAARNAGFQALLPIRGKILNVQKASITQMLSNKECAAIIQ 601

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
            +G  +   +  E  RY K+I+MTDADVDGAHI  LLLT FY+ M  LIE  +++   PP
Sbjct: 602 VVGAGSGQSFDIEQSRYHKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGYVYAAVPP 661

Query: 579 LFRI----TQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAM 633
           L RI    +   + +Y + ++     L +  KKH     +I R+KGLGEM A QL +T M
Sbjct: 662 LHRIALTGSHKGEYIYTYSDDELAGKLADLDKKHIGYNDDIQRYKGLGEMDADQLADTTM 721

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           D   R L R+ +           +  + LMG     R +FI + A   D
Sbjct: 722 DPRTRMLRRIRMED----AAQASEIFSLLMGDDVPPRKQFIVDNADDFD 766



 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 94/234 (40%), Positives = 123/234 (52%), Gaps = 26/234 (11%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
             + Y A  + +LEGL+ VR RPGMYIG TD + L H   E+IDN++DE +AG+ N I V
Sbjct: 2   PKEEYGAKDLAVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNSVDEALAGFCNDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G + V DNGRGIPV+  PK    S +E++LT LHAG KF NS+Y   GGLHGVG 
Sbjct: 62  TLHTDGSVEVADNGRGIPVDKEPK-TGLSGVEVVLTKLHAGAKFGNSSYNAVGGLHGVGS 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPL------------------------SPLEK 195
           SVVNALS  L V V R        F +G P                         + LE 
Sbjct: 121 SVVNALSSRLDVEVDRDGKTHHMTFHQGHPGVYTDADPANPSPDSPFKRTRKNRPTELEI 180

Query: 196 KEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
             KV     GTRI +  DP+IF   A F   +L+   +  ++L   +K     +
Sbjct: 181 IGKVSPKTTGTRIRYWYDPEIFNKTAEFSYEQLIDRVRQTSFLVPGLKITIIDE 234


>gi|135994|sp|P27570|TOP2_CRIFA RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|11001|emb|CAA42182.1| kinetoplast-associated type II DNA topoisomerase (toptIImt)
           [Crithidia fasciculata]
          Length = 1239

 Score =  309 bits (792), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 128/680 (18%), Positives = 245/680 (36%), Gaps = 79/680 (11%)

Query: 45  DASSIRILEGLEPVRMRPGMYIGGTDEK-----------------------ALHHLFSEV 81
           DAS  + L  ++ V +RP MY+G  + +                        L  +  E+
Sbjct: 3   DASKYQKLTPIDHVLLRPEMYVGSIETQSIPMFVFDPAKGKMVWESMQVNQGLLKIVDEI 62

Query: 82  IDNAMDE---VIAG-YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137
           + NA D     + G     I + +  +G + V ++G G+P+    K       E++   L
Sbjct: 63  LLNAADNINNSVRGARMTYISIKISDSGEIMVENDGAGLPIVK-SKEHKMYIPEMVFGHL 121

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF--SRGIPLSPLEK 195
                ++N     + G HG G  + N LS +  V        F   +     +  +P   
Sbjct: 122 LTSSNYNNDASSTTAGRHGYGAKLTNILSTKFSVVCRTAGREFHMSWTDHMRMATTPRVS 181

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAG----FDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
               + K  TR+TF PD   FG             L K     A +  +++   +     
Sbjct: 182 NVDPKEKNVTRVTFMPDYAHFGFPTAAISLDMKRVLHKRIMDLAAMFSKIEVRLNN---- 237

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
                      F F           L              T   G    ++ +     + 
Sbjct: 238 ---------VPFGFQTFNDYARLYSLPGADGAMPPEPFVHTGPNG----SIAFVPQLTQS 284

Query: 312 NPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILS 371
              I    N ++T  GGTH +     L  G+      +  K    I ++ +      ++ 
Sbjct: 285 PKRIVGVVNGVVTYNGGTHCTSAMEILETGLDS-LSRSLKKDGKVIDTNRVARHFTVLVF 343

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH---YLVQNPIEATKLLEWVIERSEE 428
           +   +P+F  Q+K +LVS      V     D +     +L  +       L      +E 
Sbjct: 344 LIQSQPKFDSQSKARLVSTVTMPRVPRTALDQYLAAMPFLEAHMNSMDDQL-----AAEL 398

Query: 429 RLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG---SAKQARNRS 485
                  + ++ ++ I  +           +  +   L + EGDSA     ++  +  + 
Sbjct: 399 NKEIGTGKRLSSRSLISSITKLVDATSSRSDGKNIRTLIVTEGDSAKALALNSLSSEQKK 458

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDA 544
              V PLRGK+LNV +   ++++  +++ DL  ALG      Y+   +LRY+++++MTD 
Sbjct: 459 FCGVFPLRGKLLNVRNKNLKRLKTCKELQDLFLALGLELGKTYKSPAELRYQRLLVMTDQ 518

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQ--KHLFLISPPLFRIT---QGTKSVYAHDEEHKQK 599
           D DG+HI  L++  F      L++    ++ L S P+ +I    +  + V  H      +
Sbjct: 519 DADGSHIKGLVINAFESLWPSLLQHNPGYISLFSTPIVKIKVNGKAKEVVAFHSFRDFHR 578

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
                + +   +     +KGLG    ++ KE   D  +  +  V    +    +      
Sbjct: 579 W---QRANPNARYSAKYYKGLGTSTTAEGKEYFADMERNVMRLVV---EPKDHRLLDSVF 632

Query: 660 NKLMGTKADERFKFIQE-RA 678
           +     + + R +++ +  A
Sbjct: 633 DSA---EVEWRKEWMSKANA 649


>gi|229817450|ref|ZP_04447732.1| hypothetical protein BIFANG_02713 [Bifidobacterium angulatum DSM
           20098]
 gi|229785239|gb|EEP21353.1| hypothetical protein BIFANG_02713 [Bifidobacterium angulatum DSM
           20098]
          Length = 764

 Score =  309 bits (792), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 150/459 (32%), Positives = 219/459 (47%), Gaps = 38/459 (8%)

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGT 301
           P   EF   GG+K ++    +   +       G+                  +K T    
Sbjct: 304 PRVAEFLHNGGVKDFVDYLSKGEPVSDIWRIQGEGTYEEETQAVGANGELHAEKITRTCG 363

Query: 302 VEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISD 360
           V+ A+ W       + S+ N I T  GGTH  GL  ++TR I+K  E    K  +++   
Sbjct: 364 VDIALRWVNGYDTVMRSFVNIIETPGGGTHVDGLMNSVTRQIRKAVEANARKLKVNLKDS 423

Query: 361 DL-------MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
           ++       M   V +++V I EP+F GQTK  L +   +  V       F   +  +  
Sbjct: 424 NMKVERDDIMAGLVAVVTVRIAEPQFQGQTKDVLGTAQVKPIVTRMSDKQFGEMITGSKR 483

Query: 414 EATKL----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFI 468
              +     LE ++     R++ RK +E   RK A+    +P KL+DC        ELFI
Sbjct: 484 GYKEQSNRVLEKIVGEMHARVQSRKAKEVTRRKNALESASMPAKLSDCQPGNDDVAELFI 543

Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528
           VEGDSA G+AK ARN   QA+LP+RGKILNV  A   ++ +N++   ++Q +G  +   +
Sbjct: 544 VEGDSALGTAKAARNAGFQALLPIRGKILNVQKASITQMLSNKECAAIIQVVGAGSGQSF 603

Query: 529 REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI----TQ 584
             E  RY KVI+MTDADVDGAHI  LLLT FY+ M  LIE  +++   PPL RI    + 
Sbjct: 604 DIEQSRYHKVIMMTDADVDGAHIRILLLTLFYRYMRPLIENGYVYAAVPPLHRIALTGSH 663

Query: 585 GTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRV 643
             + +Y + ++     L E  +KH     +I R+KGLGEM A QL +T MD   R L R+
Sbjct: 664 KGEFIYTYSDDELAGKLAELDRKHIGYNDDIQRYKGLGEMDADQLADTTMDPRTRMLRRI 723

Query: 644 EINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            +       +   +  + LMG     R  FI E A   D
Sbjct: 724 RMED----AEQASEIFSLLMGDDVPPRKAFIVENADDFD 758



 Score =  260 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 97/255 (38%), Positives = 131/255 (51%), Gaps = 27/255 (10%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A ++Y A  + +LEGL+ VR RPGMYIG TD + L H   E+IDNA+DE +AG+ N I V
Sbjct: 2   AKEDYGAKDLTVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNAVDEALAGFCNAIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G +TV DNGRGIPV+  PK    S +E++LT LHAG KF NS+Y   GGLHGVG 
Sbjct: 62  TLHTDGSITVADNGRGIPVDKEPK-TKLSGVEVVLTKLHAGAKFGNSSYNAVGGLHGVGS 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--------------------- 198
           SVVNALS  L + V R    +   F +G P    +   +                     
Sbjct: 121 SVVNALSSRLDIEVDRDGKTYHMAFHQGHPGVYTDADPEHPSPDAPFKRTRKNKPTELDI 180

Query: 199 ----VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
                  + GTRI +  DP+IF   A F   +L+   +  ++L   +K     +    E 
Sbjct: 181 IGKVPPKRTGTRIRYWADPEIFNKTAEFSYEQLVDRVRQTSFLVPGLKITVIDENIAQEP 240

Query: 255 YG-IPEKEEFYFPGG 268
               P+ E    P G
Sbjct: 241 APGEPDHEMTSVPEG 255


>gi|213691852|ref|YP_002322438.1| DNA topoisomerase (ATP-hydrolyzing) [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523313|gb|ACJ52060.1| DNA topoisomerase (ATP-hydrolyzing) [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320457947|dbj|BAJ68568.1| DNA topoisomerase IV subunit B [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 772

 Score =  309 bits (792), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 146/469 (31%), Positives = 219/469 (46%), Gaps = 38/469 (8%)

Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR-------- 299
           D    E+   P   EF   GG+K ++    +   +       G+   K   +        
Sbjct: 302 DGAFGEQPAHPRVVEFLHTGGVKDFVDFLSKGEPISDIWRIQGEGTYKEETQAVGEGGEL 361

Query: 300 --------GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
                     ++ A+ W       I S+ N + T  GGTH  G   A+T+ I+K  E   
Sbjct: 362 HAQEIERTCGLDIALRWVNGYDTTIMSFVNIVETPGGGTHVDGFMNAITKQIRKAVEDNA 421

Query: 351 NKRAISII-------SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDP 403
            K  +++         DD+    V +++  + EP+F GQTK  L +   +  V       
Sbjct: 422 RKLKVNMKDSAMKVERDDIQAGLVAVVTARVAEPQFQGQTKDVLGTAQVKPIVTRLTDKQ 481

Query: 404 FDHYLVQNPIEATKL----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           F   +  +     +     LE ++     R++ RK +E   RK A+    +P KL+DC  
Sbjct: 482 FGEMITGSKRGYKEQSGRVLEKIVGEMHARIQSRKAKEVTRRKNALESASMPAKLSDCQP 541

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 ELFIVEGDSA G+AK ARN   QA+LP+RGKILNV  A   ++ +N++   ++Q
Sbjct: 542 GNDDVAELFIVEGDSALGTAKAARNAGFQALLPIRGKILNVQKASITQMLSNKECAAIIQ 601

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
            +G  +   +  E  RY K+I+MTDADVDGAHI  LLLT FY+ M  LIE  +++   PP
Sbjct: 602 VVGAGSGQSFDIEQSRYHKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGYVYAAVPP 661

Query: 579 LFRI----TQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAM 633
           L RI    +   + +Y + ++     L +  KKH     +I R+KGLGEM A QL +T M
Sbjct: 662 LHRIALTGSHKGEYIYTYSDDELAGKLADLDKKHIGYNDDIQRYKGLGEMDADQLADTTM 721

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           D   R L R+ +           +  + LMG     R +FI + A   D
Sbjct: 722 DPRTRMLRRIRMED----AAQASEIFSLLMGDDVPPRKQFIVDNADDFD 766



 Score =  259 bits (662), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 94/234 (40%), Positives = 123/234 (52%), Gaps = 26/234 (11%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
             + Y A  + +LEGL+ VR RPGMYIG TD + L H   E+IDN++DE +AG+ N I V
Sbjct: 2   PKEEYGAKDLAVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNSVDEALAGFCNDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G + V DNGRGIPV+  PK    S +E++LT LHAG KF NS+Y   GGLHGVG 
Sbjct: 62  TLHTDGSVEVADNGRGIPVDKEPK-TGLSGVEVVLTKLHAGAKFGNSSYNAVGGLHGVGS 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPL------------------------SPLEK 195
           SVVNALS  L V V R        F +G P                         + LE 
Sbjct: 121 SVVNALSSRLDVEVDRDGKTHHMTFHQGHPGVYTDADPANPSPDSPFKRTRKNRPTELEI 180

Query: 196 KEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
             KV     GTRI +  DP+IF   A F   +L+   +  ++L   +K     +
Sbjct: 181 IGKVSPKTTGTRIRYWYDPEIFNKTAEFSYEQLIDRVRQTSFLVPGLKITIIDE 234


>gi|312132593|ref|YP_003999932.1| parb [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773537|gb|ADQ03025.1| ParB [Bifidobacterium longum subsp. longum BBMN68]
          Length = 772

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 146/469 (31%), Positives = 218/469 (46%), Gaps = 38/469 (8%)

Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR-------- 299
           D    E+   P   EF   GG+K ++    +   +       G+   K   +        
Sbjct: 302 DGAFGEQPAHPRVVEFLHTGGVKDFVDFLSKGEPISDIWRIQGEGTYKEETQAVGEGGEL 361

Query: 300 --------GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
                     V+ A+ W       I S+ N + T  GGTH  G   A+T+ I+K  E   
Sbjct: 362 HAQEIERTCGVDIALRWVNGYDTTIMSFVNIVETPGGGTHVDGFMNAITKQIRKAVEDNA 421

Query: 351 NKRAISII-------SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDP 403
            K  +++         DD+    V +++  + EP+F GQTK  L +   +  V       
Sbjct: 422 RKLKVNMKDSAMKVERDDIQAGLVAVVTARVAEPQFQGQTKDVLGTAQVKPIVTRLTDKQ 481

Query: 404 FDHYLVQNPIEATKL----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           F   +  +     +     LE ++     R++ RK +E   RK A+    +P KL+DC  
Sbjct: 482 FGEMITGSKRGYKEQSGRVLEKIVGEMHARIQSRKAKEVTRRKNALESASMPAKLSDCQP 541

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 ELFIVEGDSA G+AK ARN   QA+LP+RGKILNV  A   ++ +N++   ++Q
Sbjct: 542 GNDDVAELFIVEGDSALGTAKAARNAGFQALLPIRGKILNVQKASITQMLSNKECAAIIQ 601

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
            +G  +   +  E  RY K+I+MTDADVDGAHI  LLLT FY+ M  LIE  +++   PP
Sbjct: 602 VVGAGSGQSFDIEQSRYHKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGYVYAAVPP 661

Query: 579 LFRI----TQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAM 633
           L RI    +   + +Y + ++     L +  K   G   +I R+KGLGEM A QL +T M
Sbjct: 662 LHRIALTGSHKGEYIYTYSDDELAGKLADLDKKRIGYNDDIQRYKGLGEMDADQLADTTM 721

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           D   R L R+ +           +  + LMG     R +FI + A   D
Sbjct: 722 DPRTRMLRRIRMED----AAQASEIFSLLMGDDVPPRKQFIVDNADDFD 766



 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 94/234 (40%), Positives = 123/234 (52%), Gaps = 26/234 (11%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
             + Y A  + +LEGL+ VR RPGMYIG TD + L H   E+IDN++DE +AG+ N I V
Sbjct: 2   PKEEYGAKDLAVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNSVDEALAGFCNDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G + V DNGRGIPV+  PK    S +E++LT LHAG KF NS+Y   GGLHGVG 
Sbjct: 62  TLHTDGSVEVADNGRGIPVDKEPK-TGLSGVEVVLTKLHAGAKFGNSSYNAVGGLHGVGS 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPL------------------------SPLEK 195
           SVVNALS  L V V R        F +G P                         + LE 
Sbjct: 121 SVVNALSSRLDVEVDRDGKTHHMTFHQGHPGVYTDADPANPSPDSPFKRTRKNRPTELEI 180

Query: 196 KEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
             KV     GTRI +  DP+IF   A F   +L+   +  ++L   +K     +
Sbjct: 181 IGKVSPKTTGTRIRYWYDPEIFNKTAEFSYEQLIDRVRQTSFLVPGLKITIIDE 234


>gi|125583360|gb|EAZ24291.1| hypothetical protein OsJ_08043 [Oryza sativa Japonica Group]
          Length = 1487

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 131/678 (19%), Positives = 249/678 (36%), Gaps = 98/678 (14%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTD---------------------EKALHH 76
           ++  + Y          LE + +RP  YIG  +                        L+ 
Sbjct: 26  KTIEEMYQKK-----TQLEHILLRPDTYIGSVEKHTAQLWVYEDGAMVSRSVTYVPGLYK 80

Query: 77  LFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           +F E++ NA D        + + V +D + G ++V +NG GIPVE H +       E+I 
Sbjct: 81  IFDEILVNAADNKQRDPSMDSLRVEIDADEGRISVYNNGDGIPVEIHQE-EGVYVPEMIF 139

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA--RQNTIFSQKFSRGIPLSP 192
             L     +D++  + +GG +G G  + N  S E  +  A  R+   + Q FS  +    
Sbjct: 140 GHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFVIETADGRRQKKYKQVFSENMGKKS 199

Query: 193 LEKKEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
             +  K +  +  TR+TF+PD   F      +    L   +         KT        
Sbjct: 200 EPQITKCKQGENWTRVTFKPDLAKFNMTHLENDVVALMRKRVVDMAGTLGKTV------- 252

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
             +    +     F   +K Y+++  ++R  ++      +           E  ++  E 
Sbjct: 253 KVELDHQKVPVHSFSDYVKLYIKSASKDRDDVNELPSISQKVND-----RWEVCVSLSEG 307

Query: 312 NPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILS 371
             +  S+ N I T +GGTH   +   +   +     + +  +   + + ++       ++
Sbjct: 308 QFQQVSFVNRIATIKGGTHVDYVTNQIATHVMN--IVNKRNKNAHMKAHNVKSHLWVFVN 365

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
             I  P F  QTK  L +  A    +  L D F   +      ++ ++  ++  +E +L 
Sbjct: 366 ALIDNPAFDSQTKETLTTRQASFGSKCELSDDFLKKV-----GSSAIVLNLLSWAEFKLS 420

Query: 432 RRKQREVNRKTAIRKLRLPGKLADCS-QNIAHGTELFIVEGDSAGGSAKQARN---RSNQ 487
           +  Q+    K +        + A+ +    ++   L + EGDSA   A    +   R   
Sbjct: 421 KELQKTDGSKRSRLTGIPKLEDANGAGGKDSNNCTLILTEGDSAKALAMAGISVVGRDYY 480

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADV 546
            V PLRGK+LNV  A  ++I  N +I ++ Q LG +   QY     LRY  ++IMTD   
Sbjct: 481 GVFPLRGKLLNVREASHKQIMENAEIQNIKQILGLQHGKQYDSTKGLRYGHLMIMTDQAT 540

Query: 547 DGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKK 606
           +                                         +  +     ++  E    
Sbjct: 541 NK----------------------------------RDKKIVLPFYSMPEYEQWKESLGG 566

Query: 607 HGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK 666
           +      I  +KGLG   +S+ ++   D  K     V   K+     D + + +K    +
Sbjct: 567 NA-SGWSIKYYKGLGTSTSSEGRQYFQDIAKHKKDFV--WKNDQDDNDIELAFSK---KR 620

Query: 667 ADERFKFIQ--ERASFID 682
             +R +++   +  + +D
Sbjct: 621 ITDRKEWLTNFQSGTHLD 638


>gi|194339063|gb|ACF49447.1| GyrB [Amycolatopsis coloradensis]
          Length = 457

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 170/464 (36%), Positives = 261/464 (56%), Gaps = 19/464 (4%)

Query: 81  VIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140
           V+DN++DE +AG+A  +EV+L  +G + VVD+GRGIPV+ HPK   K TLE++LT LHAG
Sbjct: 1   VVDNSVDEAMAGHATKVEVTLLADGGVRVVDDGRGIPVDMHPK-EKKPTLEVVLTVLHAG 59

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD+ +Y +SGGLHGVG+SVVNALS  L   V      + Q+++  +P   LE      
Sbjct: 60  GKFDSDSYAVSGGLHGVGVSVVNALSKTLLAEVKYGGRSWRQEYTNQLP-GELEDLGPAE 118

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP-- 258
           +  GT ITF  D  IF     ++   + +  Q  A+L+  +      ++   E+      
Sbjct: 119 D-TGTTITFWADDDIFET-TTYNFETISRRLQEMAFLNKGLTLSLRDERVADEETEEDAS 176

Query: 259 ------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
                 +++ + +PGGL+ +++    ++  I + + + + +  G     VE A+ W    
Sbjct: 177 GQAARVKEKTYCYPGGLEDFVKHINGSKDPIHASVISFEAKGTG---LEVEVAMQWNNGF 233

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369
            P + ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  DD+      I
Sbjct: 234 TPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDPNLTGDDVREGLAAI 293

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           +S+ + EP+F GQTKTKL + +A+  V+    +    +  +NP EA  ++   I  S+ R
Sbjct: 294 VSIKLSEPQFEGQTKTKLGNSEAKTFVQQTSNEWLADWFERNPTEAKTIINKSISSSQAR 353

Query: 430 LRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
           +  RK R+ V RK A+    LPGKL DC        EL+IVEGDSAGGSAK+ R+   QA
Sbjct: 354 MAARKARDLVRRKGALEIGGLPGKLKDCRSTNPSECELYIVEGDSAGGSAKEGRDSMYQA 413

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           +LP+RGKI+NV  A  +++  N ++  L+ ALG     ++  E 
Sbjct: 414 ILPIRGKIINVEKARIDRVLKNNEVQSLITALGTGIHDEFDIEK 457


>gi|322689397|ref|YP_004209131.1| DNA topoisomerase IV subunit B [Bifidobacterium longum subsp.
           infantis 157F]
 gi|320460733|dbj|BAJ71353.1| DNA topoisomerase IV subunit B [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 772

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 146/469 (31%), Positives = 218/469 (46%), Gaps = 38/469 (8%)

Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR-------- 299
           D    E+   P   EF   GG+K ++    +   +       G+   K   +        
Sbjct: 302 DGAFGEQPAHPRVVEFLHTGGVKDFVDFLSKGEPISDIWRIQGEGTYKEETQAVGEGGEL 361

Query: 300 --------GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
                     V+ A+ W       I S+ N + T  GGTH  G   A+T+ I+K  E   
Sbjct: 362 HAQEIERTCGVDIALRWVNGYDTTIMSFVNIVETPGGGTHVDGFMNAITKQIRKAVEDNA 421

Query: 351 NKRAISII-------SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDP 403
            K  +++         DD+    V +++  + EP+F GQTK  L +   +  V       
Sbjct: 422 RKLKVNMKDSAMKVERDDIQAGLVAVVTARVAEPQFQGQTKDVLGTAQVKPIVTRLTDKQ 481

Query: 404 FDHYLVQNPIEATKL----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           F   +  +     +     LE ++     R++ RK +E   RK A+    +P KL+DC  
Sbjct: 482 FGEMITGSKRGYKEQSGRVLEKIVGEMHARIQSRKAKEVTRRKNALESASMPAKLSDCQP 541

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 ELFIVEGDSA G+AK ARN   QA+LP+RGKILNV  A   ++ +N++   ++Q
Sbjct: 542 GNDDVAELFIVEGDSALGTAKAARNAGFQALLPIRGKILNVQKASITQMLSNKECAAIIQ 601

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
            +G  +   +  E  RY K+I+MTDADVDGAHI  LLLT FY+ M  LIE  +++   PP
Sbjct: 602 VVGAGSGQSFDIEQSRYHKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGYVYAAVPP 661

Query: 579 LFRI----TQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAM 633
           L RI    +   + +Y + ++     L +  K   G   +I R+KGLGEM A QL +T M
Sbjct: 662 LHRIALTGSHKGEYIYTYSDDELAGKLADLDKKRIGYNDDIQRYKGLGEMDADQLADTTM 721

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           D   R L R+ +           +  + LMG     R +FI + A   D
Sbjct: 722 DPRTRMLRRIRMED----AAQASEIFSLLMGDDVPPRKQFIVDNADDFD 766



 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 94/234 (40%), Positives = 123/234 (52%), Gaps = 26/234 (11%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
             + Y A  + +LEGL+ VR RPGMYIG TD + L H   E+IDN++DE +AG+ N I V
Sbjct: 2   PKEEYGAKDLAVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNSVDEALAGFCNDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G + V DNGRGIPV+  PK    S +E++LT LHAG KF NS+Y   GGLHGVG 
Sbjct: 62  TLHTDGSVEVADNGRGIPVDKEPK-TGLSGVEVVLTKLHAGAKFGNSSYNAVGGLHGVGS 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPL------------------------SPLEK 195
           SVVNALS  L V V R        F +G P                         + LE 
Sbjct: 121 SVVNALSSRLDVEVDRDGKTHHMTFHQGHPGVYTDADPANPSPDSPFKRTRKNRPTELEI 180

Query: 196 KEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
             KV     GTRI +  DP+IF   A F   +L+   +  ++L   +K     +
Sbjct: 181 IGKVSPKTTGTRIRYWYDPEIFNKTAEFSYEQLIDRVRQTSFLVPGLKITIIDE 234


>gi|227553419|ref|ZP_03983468.1| possible DNA topoisomerase IV subunit B [Enterococcus faecalis
           HH22]
 gi|227177448|gb|EEI58420.1| possible DNA topoisomerase IV subunit B [Enterococcus faecalis
           HH22]
          Length = 378

 Score =  309 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 127/339 (37%), Positives = 186/339 (54%), Gaps = 17/339 (5%)

Query: 351 NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
            ++  ++   D       +LS+ + E   +F GQTK KL +  A+  V+N + +    YL
Sbjct: 1   KEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLARTVVDNVVGEQMGFYL 60

Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLADCSQNIAHGTE 465
            +N   +  L+   I+  E R   RK RE +R    RK     L GKL           E
Sbjct: 61  QENSEMSQSLIRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNE 120

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
           L++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I  N++I  ++  +G    
Sbjct: 121 LYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVG 180

Query: 526 SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG 585
            ++  ED  Y+K+IIMTDAD DGAHI  LLLTFFY+ M  LIE   +++  PPL+++++G
Sbjct: 181 PEFSIEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKG 240

Query: 586 --TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
              KSV  YA  +    +++++  K       + R+KGLGEM A QL ET MD   RTL+
Sbjct: 241 TGKKSVIEYAWTDGELAEVIDKVGK----GYMLQRYKGLGEMNAEQLWETTMDPETRTLI 296

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           RV I+         +  +  LMG K + R K+I++   F
Sbjct: 297 RVRIDD----AAQAERRVTTLMGDKVEPRRKWIEQHVQF 331


>gi|37731960|gb|AAO23340.1| type II topoisomerase [Strigomonas culicis]
          Length = 1230

 Score =  309 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 127/686 (18%), Positives = 249/686 (36%), Gaps = 76/686 (11%)

Query: 45  DASSIRILEGLEPVRMRPGMYIGGTDEK-----------------------ALHHLFSEV 81
           D S  + L  ++ V +RP MY+G  + +                        L  +  E+
Sbjct: 3   DPSKYKKLSPIDHVLLRPEMYVGSIETQPVSMFVFDPVKACMAWESMQVNHGLLKIVDEI 62

Query: 82  ----IDNAMDEVI-AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTT 136
               +DN ++          I++++   G +T+ ++G GIP+  + +       E++   
Sbjct: 63  PAQLVDN-INNAKGRRKMTFIKITMSDLGEITIENDGAGIPIVKNKEH-KIYIPEMVFGH 120

Query: 137 LHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK 196
           L     +DN     + G HG G  + N LS +  V    +   F   ++  +  +   + 
Sbjct: 121 LLTSSNYDNDESSTTAGRHGYGAKLTNILSTQFSVLCRTEGKEFRMSWTDHMRKATAPRV 180

Query: 197 EKVRN--KRGTRITFRPDPKIFGDKAG----FDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
                     TRI F PD   FG K           L K     A +   ++   +    
Sbjct: 181 SSCDKAESNLTRIKFMPDYAHFGFKNNQISLDMKRVLHKRIMDLAAMFPSIQVSING--- 237

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                       F F           + +              + G    ++ +      
Sbjct: 238 ----------VPFAFKSFDDYAGLYSIPSSDGQLPPKPFVHNSRNG----SIAFVPQLNA 283

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
               I    N ++T  GGTH +     LT  +      T  K    + ++ +M     ++
Sbjct: 284 GAKRIFGVVNGVVTHNGGTHCNAASDILTGTL-DALSRTLKKDGKVVDANRVMRHFTILV 342

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
            +   +P+F  Q+K +LVS      V     + +   +         + + +   +E   
Sbjct: 343 FLIQSQPKFDSQSKARLVSTVTMPRVPKGELEQYLSSMPFLEAHVNSMSDQI--AAELNK 400

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG---SAKQARNRSNQ 487
                + ++ K+ I  +           +  +   L + EGDSA     ++  +  +   
Sbjct: 401 EMGAGKLLSSKSLISSITKLVDATSNKSDGKNIRTLIVTEGDSAKALALNSLSSDQKRFC 460

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADV 546
            V PLRGK+LNV +   ++++N +++ DL  ALG      YR  + LRY++++ MTD D 
Sbjct: 461 GVFPLRGKLLNVRNNNLKRLKNCKELQDLFLALGLELGKTYRSLNELRYQRLLTMTDQDA 520

Query: 547 DGAHIASLLLTFFYQEMYDLIE--QKHLFLISPPLFRIT---QGTKSVYAHDEEHKQKIL 601
           DG+HI  L++  F     +L++  Q ++ L S P+ +I    +    +  +  +   K  
Sbjct: 521 DGSHIKGLVINAFESLWPELLQRHQGYISLFSTPIVKIRPRGKNQDVLSFYSFKDFHKW- 579

Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
              + H         +KGLG    ++ KE   +  +  +    +  D    K      + 
Sbjct: 580 --QRAHPNVNYTAKYYKGLGTSTTAEGKEYFSNMEQNIMK---LQVDPKDHKLLDSVFD- 633

Query: 662 LMGTKADERFKFIQE-RASFID-DVG 685
               + + R  ++ +  A   D D+ 
Sbjct: 634 --SQEVEWRKDWMTKANAFNGDVDID 657


>gi|125540787|gb|EAY87182.1| hypothetical protein OsI_08583 [Oryza sativa Indica Group]
          Length = 1486

 Score =  309 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 131/678 (19%), Positives = 249/678 (36%), Gaps = 98/678 (14%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTD---------------------EKALHH 76
           ++  + Y          LE + +RP  YIG  +                        L+ 
Sbjct: 26  KTIEEMYQKK-----TQLEHILLRPDTYIGSVEKHTAQLWVYEDGAMVSRSVTYVPGLYK 80

Query: 77  LFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           +F E++ NA D        + + V +D + G ++V +NG GIPVE H +       E+I 
Sbjct: 81  IFDEILVNAADNKQRDPSMDSLRVEIDADEGRISVYNNGDGIPVEIHQE-EGVYVPEMIF 139

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA--RQNTIFSQKFSRGIPLSP 192
             L     +D++  + +GG +G G  + N  S E  +  A  R+   + Q FS  +    
Sbjct: 140 GHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFVIETADGRRQKKYKQVFSENMGKKS 199

Query: 193 LEKKEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
             +  K +  +  TR+TF+PD   F      +    L   +         KT        
Sbjct: 200 EPQITKCKQGENWTRVTFKPDLAKFNMTHLENDVVALMRKRVVDMAGTLGKTV------- 252

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
             +    +     F   +K Y+++  ++R  ++      +           E  ++  E 
Sbjct: 253 KVELDHQKVPVHSFSDYVKLYIKSASKDRDDVNELPSISQKVND-----RWEVCVSLSEG 307

Query: 312 NPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILS 371
             +  S+ N I T +GGTH   +   +   +     + +  +   + + ++       ++
Sbjct: 308 QFQQVSFVNRIATIKGGTHVDYVTNQIATHVMN--IVNKRNKNAHMKAHNVKSHLWVFVN 365

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
             I  P F  QTK  L +  A    +  L D F   +      ++ ++  ++  +E +L 
Sbjct: 366 ALIDNPAFDSQTKETLTTRQASFGSKCELSDDFLKKV-----GSSAIVLNLLSWAEFKLS 420

Query: 432 RRKQREVNRKTAIRKLRLPGKLADCS-QNIAHGTELFIVEGDSAGGSAKQARN---RSNQ 487
           +  Q+    K +        + A+ +    ++   L + EGDSA   A    +   R   
Sbjct: 421 KELQKTDGSKRSRLTGIPKLEDANGAGGKDSNNCTLILTEGDSAKALAMAGISVVGRDYY 480

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADV 546
            V PLRGK+LNV  A  ++I  N +I ++ Q LG +   QY     LRY  ++IMTD   
Sbjct: 481 GVFPLRGKLLNVREASHKQIMENAEIQNIKQILGLQHGKQYDSTKGLRYGHLMIMTDQAT 540

Query: 547 DGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKK 606
           +                                         +  +     ++  E    
Sbjct: 541 NK----------------------------------RDKKIVLPFYSMPEYEQWKESLGG 566

Query: 607 HGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK 666
           +      I  +KGLG   +S+ ++   D  K     V   K+     D + + +K    +
Sbjct: 567 NA-SGWSIKYYKGLGTSTSSEGRQYFQDIAKHKKDFV--WKNDQDDNDIELAFSK---KR 620

Query: 667 ADERFKFIQ--ERASFID 682
             +R +++   +  + +D
Sbjct: 621 ITDRKEWLTNFQSGTHLD 638


>gi|68138761|gb|AAY86011.1| GyrB [Burkholderia cenocepacia]
          Length = 640

 Score =  309 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 175/478 (36%), Positives = 260/478 (54%), Gaps = 29/478 (6%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEK 195
           Y++SGGLHGVG+S VNALS  L +TV R       +F RG+             +SP+  
Sbjct: 1   YKVSGGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLEVVDGVEVSPMLV 60

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
                N RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E  
Sbjct: 61  TGDTEN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD 118

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PE 314
                  F F GG+K +++   + ++ +   +F    EK G     VE A+ W +     
Sbjct: 119 -------FAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGV---GVEVAMQWNDSYNEN 168

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSV 372
           +  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV
Sbjct: 169 VLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSV 228

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
            + EP+F+ QTK KLVS + +  VE  +    + +L++ PI+A  +   ++E +  R   
Sbjct: 229 KVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAA 288

Query: 433 RKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           RK RE+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LP
Sbjct: 289 RKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILP 348

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAH 550
           LRGK+LNV  A  +K+ +++QI+ LV ALGC    +    + LRY ++IIMTDADVDGAH
Sbjct: 349 LRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAH 408

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           I +LLLTF Y++M D+IE+ ++++  PPL++I  G    Y  D+      +      G
Sbjct: 409 IRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQG 466


>gi|302148634|pdb|2XCR|B Chain B, The 3.5a Crystal Structure Of The Catalytic Core (B'a'
           Region) Of Staphylococcus Aureus Dna Gyrase Complexed
           With Gsk299423 And Dna
 gi|302148635|pdb|2XCR|D Chain D, The 3.5a Crystal Structure Of The Catalytic Core (B'a'
           Region) Of Staphylococcus Aureus Dna Gyrase Complexed
           With Gsk299423 And Dna
 gi|302148638|pdb|2XCR|S Chain S, The 3.5a Crystal Structure Of The Catalytic Core (B'a'
           Region) Of Staphylococcus Aureus Dna Gyrase Complexed
           With Gsk299423 And Dna
 gi|302148639|pdb|2XCR|U Chain U, The 3.5a Crystal Structure Of The Catalytic Core (B'a'
           Region) Of Staphylococcus Aureus Dna Gyrase Complexed
           With Gsk299423 And Dna
          Length = 726

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 102/242 (42%), Positives = 146/242 (60%), Gaps = 7/242 (2%)

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADCS       E+F+VEGDSAGGS K  R+   QA+LPLRGKILNV  A 
Sbjct: 1   MDVASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKAR 60

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            ++I NN +I  ++ A G      +     RY K++IMTDADVDGAHI +LLLTFFY+ M
Sbjct: 61  LDRILNNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFM 120

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
             LIE  ++++  PPL+++TQG +  Y +++    K+  E   +   K  I+R+KGLGEM
Sbjct: 121 RPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSEL--NPTPKWSIARYKGLGEM 178

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
            A QL ET M+   R LL+V++   +    +   +   LMG   + R +FI++ A +  +
Sbjct: 179 NADQLWETTMNPEHRALLQVKLEDAI----EADQTFEMLMGDVVENRRQFIEDNAVYA-N 233

Query: 684 VG 685
           + 
Sbjct: 234 LD 235


>gi|302148632|pdb|2XCO|A Chain A, The 3.1a Crystal Structure Of The Catalytic Core (B'a'
           Region) Of Staphylococcus Aureus Dna Gyrase
 gi|302148633|pdb|2XCQ|A Chain A, The 2.98a Crystal Structure Of The Catalytic Core (B'a'
           Region) Of Staphylococcus Aureus Dna Gyrase
          Length = 726

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 102/242 (42%), Positives = 146/242 (60%), Gaps = 7/242 (2%)

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADCS       E+F+VEGDSAGGS K  R+   QA+LPLRGKILNV  A 
Sbjct: 1   MDVASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKAR 60

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            ++I NN +I  ++ A G      +     RY K++IMTDADVDGAHI +LLLTFFY+ M
Sbjct: 61  LDRILNNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFM 120

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
             LIE  ++++  PPL+++TQG +  Y +++    K+  E   +   K  I+R+KGLGEM
Sbjct: 121 RPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSEL--NPTPKWSIARYKGLGEM 178

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
            A QL ET M+   R LL+V++   +    +   +   LMG   + R +FI++ A +  +
Sbjct: 179 NADQLWETTMNPEHRALLQVKLEDAI----EADQTFEMLMGDVVENRRQFIEDNAVYA-N 233

Query: 684 VG 685
           + 
Sbjct: 234 LD 235


>gi|157866980|ref|XP_001682045.1| mitochondrial DNA topoisomerase II [Leishmania major]
 gi|68125496|emb|CAJ03357.1| mitochondrial DNA topoisomerase II [Leishmania major strain
           Friedlin]
          Length = 1236

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 129/680 (18%), Positives = 249/680 (36%), Gaps = 79/680 (11%)

Query: 45  DASSIRILEGLEPVRMRPGMYIGGTDEK-----------------------ALHHLFSEV 81
           DAS  + L  ++ V +RP MY+G  + +                        L  +  E+
Sbjct: 3   DASKYKKLTPIDHVLLRPEMYVGSIETQPTPMYIFDPEKGRMVWETMRVNQGLLKIVDEI 62

Query: 82  IDNAMDEVIAGYA----NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137
           + NA D +           I + +   G +TV ++G G+P+    +       E++   L
Sbjct: 63  LLNAADNINNSKGSVRQTYINIHISDTGEITVENDGAGLPI-VRSREHKMYIPEMVFGHL 121

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF--SRGIPLSPLEK 195
                ++N +   + G HG G  + N LS +  V        F   +     +  +P   
Sbjct: 122 LTSSNYNNDSTSTTAGRHGYGAKLTNILSTKFSVVCRTDGREFHMSWTDHMRMATAPRVN 181

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAG----FDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
           +   + K  TR+ F PD   FG  +          L K     A +  +++   +     
Sbjct: 182 RVDPKEKNVTRVKFMPDYAHFGFPSASISLDMKRVLHKRVMDLAAMFSKIEVRLNN---- 237

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
                      F F           L              T   G    +V +     + 
Sbjct: 238 ---------VPFGFRTFTDYAGLYSLPGLDGSMPPEPFVYTSPNG----SVAYVPQLTQS 284

Query: 312 NPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILS 371
              I S  N ++T  GGTH +     L   +         K    + ++ +      ++ 
Sbjct: 285 PKRIVSVVNGVVTYNGGTHCNAAMDILDACLDS-LSKNFKKNGKVVDTNRVQRHFTVLVF 343

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH---YLVQNPIEATKLLEWVIERSEE 428
           +   +P+F  Q+K +LVS      V     + +     +L  +       L   + +   
Sbjct: 344 LVQAQPKFDSQSKARLVSTVTMPRVPKNTLEKYLERMPFLEAHVNSMDDQLTNELNK--- 400

Query: 429 RLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG---SAKQARNRS 485
                  R ++ KT I  +           +  +   L I EGDSA     ++  +  + 
Sbjct: 401 --EIGAGRRLSSKTLISSITKLVDATSSRPDGRNIRTLIITEGDSAKALALNSLSSEQKK 458

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDA 544
              V PLRGK+LNV +   ++++  +++ DL  +LG     +YR   +LRY+++++MTD 
Sbjct: 459 YCGVFPLRGKLLNVRNKNLKRLKTCKELQDLFLSLGLELGKEYRSPAELRYQRLLVMTDQ 518

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQ--KHLFLISPPLFRIT---QGTKSVYAHDEEHKQK 599
           D DG+HI  L++  F      L++    ++ L S P+ +I    +  +++  H      +
Sbjct: 519 DADGSHIKGLVINAFESLWPKLLQNNPGYISLFSTPIVKIKVSGKSKEAIAFHSFRDFHR 578

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
                + H   +     +KGLG    ++ KE   D  K  + ++ +  D    +      
Sbjct: 579 W---QRAHPSARYTAKYYKGLGTSTTAEGKEYFADMEKNVM-QLTV--DARDHQLLDSVF 632

Query: 660 NKLMGTKADERFKFIQE-RA 678
           +     + + R +++ +  A
Sbjct: 633 DAA---EVEWRKEWMTKANA 649


>gi|294809110|ref|ZP_06767828.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|294443664|gb|EFG12413.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 317

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 125/313 (39%), Positives = 184/313 (58%), Gaps = 8/313 (2%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y A SI++LEGLE VR RP MYIG    K LHHL  E++DN++DE +AGY + IEV+++
Sbjct: 12  SYSADSIQVLEGLEAVRKRPAMYIGDISVKGLHHLVYEIVDNSIDEALAGYCDHIEVTIN 71

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  +TV DNGRGIPV+ H K   KS LE+ +T LHAGGKFD  +Y++SGGLHGVG+S V
Sbjct: 72  EDNSITVQDNGRGIPVDYHEK-EKKSALEVAMTVLHAGGKFDKGSYKVSGGLHGVGMSCV 130

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  +   V R   I+ Q++  G PL  +++     +  GTR  F PD  IF +   +
Sbjct: 131 NALSTHMTTQVFRNGKIYQQEYEIGKPLYSVKEVG-TADITGTRQQFWPDGTIFTETV-Y 188

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L    +  AYL+  ++   +  + +  + G  + E+FY   GL+ +++    +R  
Sbjct: 189 DYKILASRLRELAYLNAGLRISLTD-RRVVNEDGSFKSEQFYSEEGLREFVRFIESSREH 247

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           + +++    +EK+G     +E AI +     E   SY N I T EGGTH +G R ALTR 
Sbjct: 248 LINDVIYLNSEKQGIP---IEVAIMYNTGFSENVHSYVNNINTIEGGTHLAGFRRALTRT 304

Query: 342 IKKYAELTQNKRA 354
           +KK  +  +  + 
Sbjct: 305 LKKSPKTARCWKR 317


>gi|227553420|ref|ZP_03983469.1| possible DNA topoisomerase IV subunit B [Enterococcus faecalis
           HH22]
 gi|227177431|gb|EEI58403.1| possible DNA topoisomerase IV subunit B [Enterococcus faecalis
           HH22]
          Length = 299

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 113/310 (36%), Positives = 172/310 (55%), Gaps = 14/310 (4%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +  ++ Y+ +SI++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DE ++GY N 
Sbjct: 2   AKKINNEYNDASIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGNE 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V++  +  + V D+GRG+P   H       T+E+I T LHAGGKF    Y+ SGGLHG
Sbjct: 62  INVTIQKDNSICVADSGRGMPTGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHG 119

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           VG SVVNALS  L V + R    + ++F   G P+  L+K  K + + GT +TF PD  I
Sbjct: 120 VGASVVNALSKWLEVHIVRDGVEYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDDTI 179

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     F    L +  +  A+L   VK   + ++        P++E F++  G+K ++  
Sbjct: 180 FSTTN-FSYEILAERLRESAFLLKGVKITLTDER-----GEEPKEEVFHYEEGIKEFVAY 233

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
             E +  ++         K+G     VE A  + +   E   S+ N + T +GGTHE G+
Sbjct: 234 LNEEKDTLTPV-VYFSGAKEGI---EVELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGM 289

Query: 335 RVALTRGIKK 344
           + ++T+   +
Sbjct: 290 KTSMTKAYNE 299


>gi|27447212|gb|AAL99217.1| kinetoplast and nucleus-associated type II DNA topoisomerase [Bodo
           saltans]
          Length = 1247

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 131/668 (19%), Positives = 237/668 (35%), Gaps = 53/668 (7%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTDEK-----------------------ALHHLFSEVI 82
           A   + L  ++ V +RP MY+G  + +                        L  +F E++
Sbjct: 2   AHKYKKLSPIDHVLLRPEMYVGSVESQPIQLFLLDDQHSKVEWTTADLNHGLLKIFDEIV 61

Query: 83  DNAMDE---VIAGYANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLH 138
            NA D            I V++D   G +TV ++G GIP+    K       E+I   L 
Sbjct: 62  LNAADNIHNSKRNPMTFINVTIDETTGQITVENDGAGIPLVK-SKDHKLLIPEMIFGHLL 120

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
               +DN    +S G HG G  + N +S E  V     +   + +++  +      + + 
Sbjct: 121 TSSNYDNDPDSMSAGRHGYGAKLTNIMSQEFIVYCRTADKEVTIRWTDHMRSIDDYQVQP 180

Query: 199 VRNKRG-TRITFRPDPKIFGDKA--GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
                  T+ITF PD  +FG           L K     A     V   ++        +
Sbjct: 181 TNEAGNLTKITFTPDFSVFGVTKLTKDMYRILHKRILDLAAAFPSVTVSFNGTALDVGSF 240

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPE 314
               K                + +           K          + +        +  
Sbjct: 241 ASYVKLFEAPASLFSAPTAPVVADGDAAPPPAELNKPFLFEVKHLRLAFIPQPQASVSRR 300

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFI 374
             +  N ++T  GGTH    +  LT  +       + K  I +  +  +     ++ +  
Sbjct: 301 TFAVVNGVVTYSGGTHVQAAQQILTDAV-DALVAQKKKEGIIVTVNTFLRYFTTVVFLET 359

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            +P+F  Q+K +LVS                   +      +   +  ++   + L    
Sbjct: 360 TQPKFDSQSKVRLVSKVKFPRFPTGQLVEH----LATMTFLSDASKGQMDVLNKELNALI 415

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLP 491
           Q    R+  I  L      A    + +    L + EGDSA   A  +     R    V P
Sbjct: 416 QVSGKRRPMISTLTKLVDAASAGGSGSEIRTLIVTEGDSAKALALNSLSNEQRKYFGVFP 475

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAH 550
           LRGK+LNV +    +++  +++ DL  ALG     +Y   E LRY+++++MTD D DG H
Sbjct: 476 LRGKLLNVRNNNLARLKKCKELCDLFAALGIEIGRRYTSTESLRYQRLLVMTDQDADGTH 535

Query: 551 IASLLLTFFYQEMYDLIEQ--KHLFLISPPLFRI-TQGTKSVYAHDEEHKQKILEEFKKH 607
           I  LL++ F      L++     + + S PL R  T+G      ++ +       +  + 
Sbjct: 536 IKGLLISAFESLWPSLLQHSLGFISIFSTPLIRATTRGGDVHSFYNVQEFVAWKHDNARL 595

Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTL-LRVEINKDLNSLKDTQDSINKLMGTK 666
                 I  +KGLG    ++ KE      +  + L+V      +  +   +  +     +
Sbjct: 596 ASECF-IKYYKGLGTSTTTEGKEYFKQMEQHLMPLQVT----PSDSQVLDNVFD---SDE 647

Query: 667 ADERFKFI 674
              R +++
Sbjct: 648 VQWRKEWL 655


>gi|339810|gb|AAA61210.1| topoisomerase II [Homo sapiens]
          Length = 886

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 112/565 (19%), Positives = 212/565 (37%), Gaps = 39/565 (6%)

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
           K        +I   L     +D+   +++GG +G G  + N  S +  V  A +    S 
Sbjct: 4   KVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSF 63

Query: 183 K--FSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLS 238
           K  +   +  +   K +    +  T ITF+PD              A + +     A   
Sbjct: 64  KQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKDIVALMTRRAYDLAGSC 123

Query: 239 GRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH 298
             VK  ++  K                  G ++Y+   ++++   +        E     
Sbjct: 124 RGVKVMFNGKKLPV--------------NGFRSYVDLYVKDKLDETGVALKVIHEL---A 166

Query: 299 RGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII 358
               +  +   E+  +  S+ N+I T +GG H   +   +   + +     +NK  +S+ 
Sbjct: 167 NERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIE-VVKKKNKAGVSVK 225

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
              +       ++  I  P F  QTK  +         +  L + F      N      +
Sbjct: 226 PFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKCQLSEKFFK-AASNCGIVESI 284

Query: 419 LEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
           L WV  +++   +  K+    + + I+ +       D     +    L + EGDSA   A
Sbjct: 285 LNWVKFKAQ--TQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLA 342

Query: 479 KQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED--- 532
                   R    V PLRGKILNV  A  ++I  N +I ++++ +G + +  Y + +   
Sbjct: 343 VSGLGVIGRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYDDAESLK 402

Query: 533 -LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYA 591
            LRY K++IMTD D DG+HI  LL+ F +     L++   L     P+ + ++  + +  
Sbjct: 403 TLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSF 462

Query: 592 HDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651
           +      +  +      +   +I  +KGLG   A + KE   D  +  +L          
Sbjct: 463 YSIPEFDEWKKHI--ENQKAWKIKYYKGLGTSTAKEAKEYFADMERHRILF--RYAGPED 518

Query: 652 LKDTQDSINKLMGTKADERFKFIQE 676
                 + +K    K D+R +++  
Sbjct: 519 DAAITLAFSK---KKIDDRKEWLTN 540


>gi|13358824|dbj|BAB33158.1| DNA gyrase B subunit [Prevotella oralis]
          Length = 484

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 181/491 (36%), Positives = 274/491 (55%), Gaps = 24/491 (4%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  +Y++SGGLHGVG+S VNALS  +   V R   I+ Q++ +G PL P++      +KR
Sbjct: 1   DKGSYKVSGGLHGVGVSCVNALSSHMLSQVFRDGKIYQQEYEKGKPLYPVKVMG-TTDKR 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GTR  F PD  IF     +    + +  +  AYL+  +K   +  +   E  G P  E F
Sbjct: 60  GTRQQFWPDKTIFTTIH-YQWDIIARRMRELAYLNAGIKITLTDLRANEE--GKPRVEVF 116

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           +   GLK +++    +R+ +  ++   KTEK+G     +E AI +  +    I SY N I
Sbjct: 117 HAKDGLKEFVRYVDRHRTHLFDDVIYLKTEKQGIP---IEVAIMYNTDYSENIHSYVNNI 173

Query: 323 LTDEGGTHESGLRVALTRGIKKYAEL------TQNKRAISIISDDLMISAVGILSVFIRE 376
            T EGGTH SG R ALTR +K YA+          K  I I  +D       ++S+ + E
Sbjct: 174 NTIEGGTHLSGFRTALTRVLKAYADNDPVISKQIEKAKIEIAGEDFREGLTAVISIKVAE 233

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F GQTKTKL + +    V+ A+ +   +YL ++P EA K+ E V+  +  R+  RK R
Sbjct: 234 PQFEGQTKTKLGNSEVSGAVQQAVGEALTNYLEEHPAEAKKICEKVVLAATARIAARKAR 293

Query: 437 EVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E  ++   +    LPGKLADCS       E+F+VEGDSAGGSAKQ R+R  QA+LPLRGK
Sbjct: 294 ESVQRKNFMSGGGLPGKLADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGK 353

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGA 549
           ILNV      ++   + +M+++Q++G R         +   + LRY+K+IIMTDADVDG+
Sbjct: 354 ILNVEKVQWHRVFEAESVMNIIQSIGVRFGVEGEDDREANIDKLRYDKIIIMTDADVDGS 413

Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEF--KK 606
           HI +L++T FY+ M  +IE  HL++ +PPL++ + +   S Y + E+ +Q   +++    
Sbjct: 414 HIDTLIMTLFYRFMPKVIEDGHLYIANPPLYKCSYKNKVSEYCYTEQQRQAFFDKYANGD 473

Query: 607 HGKGKIEISRF 617
                I   R+
Sbjct: 474 EDAKSIHTQRY 484


>gi|239735437|dbj|BAH70485.1| gyrase B subunit [Cardinium endosymbiont of Amphitetranychus
           quercivorus]
          Length = 478

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 183/484 (37%), Positives = 270/484 (55%), Gaps = 17/484 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
             TY+ISGGLHGVG+S VNALS  L VTV R   I+ Q++++GIP  P+++       RG
Sbjct: 1   KDTYKISGGLHGVGVSCVNALSAHLEVTVYRNGKIYKQEYAQGIPRYPVKEVGSTA-LRG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PD  IF     ++   ++   Q  AYL+  +       +E  E+   P K+ F+
Sbjct: 60  TTVHFTPDNSIFTTTV-YNLHTIVNRLQELAYLNVGLTMQLEDHRERDEQN-SPFKQTFH 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
             GGL  ++      +  I       + EK       V+ A+ +       + SY N I 
Sbjct: 118 SEGGLLEFVSHLDSTKVSIMPAPILVEGEKNNVI---VQVAMTYNTGYSETVVSYVNNIH 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGG H +G + A TR +K YA+ +    K  I II DD       ++SV + EP+F G
Sbjct: 175 TIEGGMHVTGFKRAXTRTLKSYADKSGLLEKAKIEIIGDDFREGLTAVISVKVAEPQFEG 234

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNR 440
           QTKTKL + + Q  VE+ + +   +YL ++P EA  ++  VI      +  R+ +  V R
Sbjct: 235 QTKTKLGNAEVQGAVESCVAEVLHYYLEEHPKEAKLIINKVIVAAQARQAARKAREMVQR 294

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K  +    LPGKLADCS+      ELF+VEGDSAGG+AK  RNR  QA+LPL+GKILNV 
Sbjct: 295 KNVLMSNSLPGKLADCSERDPALCELFLVEGDSAGGTAKMGRNRRFQAILPLKGKILNVE 354

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-----RSQYREEDLRYEKVIIMTDADVDGAHIASLL 555
            A + KI +N+Q+ +++ ALG              + LRY K++IMTDADVDG+HI +L+
Sbjct: 355 KAQTYKIYDNEQVRNMITALGVSMGTDGTDQATHLDKLRYHKIVIMTDADVDGSHIRTLI 414

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK-KHGKG-KIE 613
           LTFF++ M ++IE+ HL++ SPPL+ + +  +  Y   E  K+K ++E   K GK   + 
Sbjct: 415 LTFFFRYMREVIEKGHLYIASPPLYLVKRDKEEHYCWTELEKEKWVKELSLKDGKADAVF 474

Query: 614 ISRF 617
           + R+
Sbjct: 475 VQRY 478


>gi|58761285|gb|AAW82357.1| DNA gyrase subunit B [Dehalococcoides sp. FL2]
          Length = 448

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 173/461 (37%), Positives = 259/461 (56%), Gaps = 17/461 (3%)

Query: 78  FSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137
             E++ N++DE +AG  + I+V +  +G ++V DNGRGIPV+ H      S LE ++T L
Sbjct: 1   VYEIVYNSVDEAMAGVCDRIKVIMFKDGSVSVEDNGRGIPVDIHS-TTKISALETVMTVL 59

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAG KF   TY++SGGLHGVG SVVNALS+   V V R   I+ Q + RG P +PLE+  
Sbjct: 60  HAGAKFGGKTYQVSGGLHGVGASVVNALSEWTTVKVRRNGKIYQQSYLRGKPSTPLEEVG 119

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
            V    GT   F  D +IF     +D   L    +  AYL+  ++     +K   E+   
Sbjct: 120 -VSEGSGTTTIFMADSQIFST-TEYDFETLTDRLREIAYLNKGLEVYIYDEKSDQERT-- 175

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-IT 316
                +YF GG+  +++    NR +   +      +   T    +E AI + +   +   
Sbjct: 176 -----YYFEGGITGFVRHLNRNREVRHRQPIYITKKSDSTI---LEVAIQYNDGYSDSTL 227

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFI 374
           ++ N + T +GGTH +G R ALTR    YA  ++  +    +++ DD+    V I+SV +
Sbjct: 228 TFANCVNTVDGGTHLTGFRSALTRAFNDYAHKSKFLKDTDPNLMGDDVREGIVAIVSVKL 287

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP+F GQTK KL +++ +  VE+A+ +    YL ++P +  ++LE  I  ++ R   RK
Sbjct: 288 PEPQFEGQTKGKLGNIEIKSFVESAVAEQLSLYLEEHPDDTKRILEKCITAAKAREAARK 347

Query: 435 QRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            R+ + RK+A+    LPGKLADCS+  A   ELF+VEGDSAGGSAKQ RNR  QA+LPLR
Sbjct: 348 ARDLIIRKSALDTGTLPGKLADCSERDASLCELFLVEGDSAGGSAKQGRNRRFQAILPLR 407

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
           GKILNV  A  +K+  +++I  ++ AL     + +    LR
Sbjct: 408 GKILNVEKASPDKMLAHEEIRAIITALAAGIDNDFDPAKLR 448


>gi|297243590|ref|ZP_06927521.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Gardnerella vaginalis AMD]
 gi|296888341|gb|EFH27082.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Gardnerella vaginalis AMD]
          Length = 793

 Score =  307 bits (785), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 143/463 (30%), Positives = 221/463 (47%), Gaps = 38/463 (8%)

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGT 297
               P   EF   GG+K ++    +  ++      +G+                  ++ T
Sbjct: 329 NKHHPRVVEFLHNGGVKDFVDFLSKGEAVSDIWRISGEDTYVEETQAVDSAGDLHAQQVT 388

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
            +  V+ A+ W       I S+ N + T  GG H  G    LT+ I+K  E    K  ++
Sbjct: 389 RKCGVDIAMRWVNGYDSTIISFVNVVETPGGGMHVDGFLQGLTKQIRKAVEDNARKLKVN 448

Query: 357 II-------SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
           +         DD+    V +++V I EP+F GQTK  L +   +  V       F   + 
Sbjct: 449 LKDSNTKIERDDITAGLVAVVTVRIAEPQFQGQTKDVLGTAQVKPIVTKMTDAQFGEMIT 508

Query: 410 QNPIEATKL----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +     +     LE ++     R++ RK +E   RK A+    +P KL+DC        
Sbjct: 509 GSKRGFKEQSARVLEKIVSEMHARIQARKTKEVTRRKNALESASMPPKLSDCQPGNDDVA 568

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           ELFIVEGDSA G+AK ARN + QA+LP+RGKILNV  A   ++ +N++   ++Q +G  +
Sbjct: 569 ELFIVEGDSALGTAKAARNSAFQALLPIRGKILNVQKASLAQMLSNKECAAIIQVVGAGS 628

Query: 525 RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-- 582
            + +     RY K+++MTDADVDGAHI  LLLT FY+ M  LIE  H++   PPL RI  
Sbjct: 629 GASFDISQARYNKIVMMTDADVDGAHIRILLLTLFYRYMRPLIEHGHVYAAVPPLHRIAL 688

Query: 583 --TQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRT 639
              +  + +Y + ++     L++ +  G     +I R+KGLGEM A QL +T MD   R 
Sbjct: 689 AGKRKGEYIYTYSDDELAGKLDDLQAKGIDFNSDIQRYKGLGEMDADQLADTTMDPRTRM 748

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           L R+ +       +   +  + LMG     R +FI + A   D
Sbjct: 749 LRRIRMED----AQQASEVFDLLMGDDVPPRKQFIVDNADDFD 787



 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 89/232 (38%), Positives = 122/232 (52%), Gaps = 26/232 (11%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + YDA S+ +LEGL+ VR RPGMYIG TD + L H   E+IDNA+DE +AG  + I V+L
Sbjct: 6   EQYDADSLTVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNAVDEALAGACDHIIVTL 65

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G + V DNGRGIPV+  PK    + +E++LT LHAG KF N++Y  +GGLHGVG SV
Sbjct: 66  HDDGSIEVADNGRGIPVDVEPK-TKLTGVEVVLTKLHAGAKFGNASYNAAGGLHGVGSSV 124

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK----------------------- 198
           VNALS  L V V R        F +G P    +   +                       
Sbjct: 125 VNALSLRLDVEVDRDGKTHHMAFHQGHPGVYSDADPEHPSPASPFKRTRKNKPTELEIIG 184

Query: 199 --VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
                  GTR+ +  DP+IF   A F   +L+   +  ++L   +K     +
Sbjct: 185 TVSPKTTGTRVRYWADPEIFNSTAHFSYEQLIARVRQTSFLVPGLKITVIDE 236


>gi|212715647|ref|ZP_03323775.1| hypothetical protein BIFCAT_00547 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661014|gb|EEB21589.1| hypothetical protein BIFCAT_00547 [Bifidobacterium catenulatum DSM
           16992]
          Length = 783

 Score =  307 bits (785), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 149/463 (32%), Positives = 222/463 (47%), Gaps = 38/463 (8%)

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGT 297
           KY     EEF   GG++ ++    +  ++      TG+                  +K T
Sbjct: 319 KYTHARIEEFCHTGGVRDFVDYLSKGEAVSDIWRVTGEDTYVEETQAVGDGGELHAQKVT 378

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
            +  V+ A+ W       + S+ N + T  GGTH  G  + +T+ I+K  E    K  ++
Sbjct: 379 RKCAVDIAMRWTNGYDTTMRSFVNVVETPGGGTHVDGYLLGMTKQIRKAIEDNARKLKVN 438

Query: 357 IISDDLMI-------SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
           +   ++ +         V +++V I EP+F GQTK  L +   +  V       F   + 
Sbjct: 439 LKDSNMKVERDDILSGLVAVITVRIAEPQFQGQTKDVLGTAQVKPIVSKMTDKQFGEMIT 498

Query: 410 QNPIEATKL----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +     +     LE ++     R++ RK +E   RK A+    +P KL+DC        
Sbjct: 499 GSKRGYKEQSGRVLEKIVGEMHARIQARKTKEVTRRKNALESASMPPKLSDCQPGNDDVA 558

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           ELFIVEGDSA G+AK ARN   QA+LP+RGKILNV  A   ++ +N++   ++Q +G  +
Sbjct: 559 ELFIVEGDSALGTAKAARNSGFQALLPIRGKILNVQKASLSQMLSNKECAAIIQVVGAGS 618

Query: 525 RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-- 582
            + +  E  RY KVI+MTDADVDGAHI  LLLT FY+ M  LIE  H++   PPL RI  
Sbjct: 619 GASFDIEQARYNKVIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGHVYAAVPPLHRIAL 678

Query: 583 --TQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRT 639
              +  + +Y + ++     L E  K   G   +I R+KGLGEM A QL +T MD   R 
Sbjct: 679 TGARKGEYIYTYSDDELAGKLAELDKKRIGYNEDIQRYKGLGEMDADQLADTTMDPRTRM 738

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           L R+ +       +      + LMG     R  FI E A   D
Sbjct: 739 LRRIRMED----AEQASRIFSLLMGDDVPPRKAFIVENADDFD 777



 Score =  257 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 105/332 (31%), Positives = 149/332 (44%), Gaps = 35/332 (10%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
              DNY A S+ +LEGL+ VR RPGMYIG TD + L H   E+IDN++DE +AG  N I 
Sbjct: 6   KDKDNYGAGSLTVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNSVDEALAGVCNHII 65

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+L  +G + V DNGRGIPV+  PK    + +E++LT LHAG KF NS+Y  SGGLHGVG
Sbjct: 66  VTLHSDGSVEVADNGRGIPVDIEPK-TKLTGVEVVLTKLHAGAKFGNSSYGASGGLHGVG 124

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK-------------------- 198
            SVVNALS  L V V R        F +G P    +   +                    
Sbjct: 125 SSVVNALSSRLDVEVDRDGKTHHMSFHQGHPGVYTDVDSEHPSPDAPFKRTRKNRPTELE 184

Query: 199 -----VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---- 249
                     GTRI +  DP+IF D A F   +L+   +  ++L   +K     +     
Sbjct: 185 IIGKVSPKTTGTRIRYWADPEIFNDTAEFSYEQLIDRVRQTSFLVPGLKITVIDENIPET 244

Query: 250 --EIAEKYGIPEKEEFYFPGGLKTYLQTK---LENRSLISSEIFTGKTEKKGTHRGTVEW 304
             E  ++    +          + +  T+        +  ++  T K+++ G     V  
Sbjct: 245 GDESIDEMLEVDDITNTADDKSQDFEGTQEVAQSQEPVADNDAQTQKSDESGDAGNAVAG 304

Query: 305 AIAWCEENPEITSYCNTILTDEGGTHESGLRV 336
                +   +      T    E   H  G+R 
Sbjct: 305 QTVETDAVAQPQESKYTHARIEEFCHTGGVRD 336


>gi|124806668|ref|XP_001350789.1| term=DNA gyrase subunit B;evidence=inferred from direct assay
           [Plasmodium falciparum 3D7]
 gi|23496917|gb|AAN36469.1| term=DNA gyrase subunit B;evidence=inferred from direct assay
           [Plasmodium falciparum 3D7]
          Length = 1006

 Score =  307 bits (785), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 197/749 (26%), Positives = 280/749 (37%), Gaps = 179/749 (23%)

Query: 9   FSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGG 68
            S  P + +   +KL+   +    P +       NYDA  I ILEGLE VR RPGMYIG 
Sbjct: 95  VSRFPLEEERKRKKLEHMNKRNIYPCY-------NYDAKDIVILEGLEAVRKRPGMYIGN 147

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           TD K LH +  E+IDN++DE      N I+V +  +  +T+ DNGRGIP + H K   KS
Sbjct: 148 TDVKGLHQILFEIIDNSVDEYNNFECNTIKVVIHKDDSVTIEDNGRGIPCDVHEK-TKKS 206

Query: 129 TLEIILTTLHAGGKFDNST----------------------------------------- 147
            LE +LT LH+G KF +                                           
Sbjct: 207 ALETVLTVLHSGAKFFDDEMDDEIDNNMNNTGNTNTSEKNNRDNISNNNNNNNNNKRTKK 266

Query: 148 --------YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
                   Y+ S GLHGVG+SV NALS  + V V R N I+S +  +G     L      
Sbjct: 267 NSKESAQKYKYSSGLHGVGLSVANALSSFMKVKVFRNNKIYSIELEKGKVTKELTITNCP 326

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE------ 253
            NKRGT+I ++PD  IF      ++  +       AYL+ ++   +  ++   +      
Sbjct: 327 INKRGTQIHYKPDSSIFKSSTKHNSDLIKNRIHQLAYLNEKLTFYFYDERSENKNSIYIS 386

Query: 254 ---------KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
                    K               K      + N +L        +          +E 
Sbjct: 387 KGNKSNEIIKNKKKNTSIDNENEDNKNNTSNYVSNNTLKDDVSNENENMSDNLVNKNIEI 446

Query: 305 AI----------AWCEENPEITSYCNTILT------------DEGGTHESGLRVALTRGI 342
                           E        N                     H++       + +
Sbjct: 447 TDYNNLDFYNYEIIKHEYGLNEYITNITKNKTNLFKDNDKIISISCYHKNIYIDLRMKWL 506

Query: 343 -KKY-----------------------------AELTQNKRAISII------SDDLMISA 366
             +Y                                   K+   I        + +    
Sbjct: 507 SNQYNENIISFVNNVNTTDGGTHVDALKYAVSRCVNYNIKKNEMIKNFVNIPGEYIREGL 566

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             ILSV +  PEF GQTKTKL S   +  +E+ + +         P   + +    ++  
Sbjct: 567 TAILSVKMNNPEFEGQTKTKLGSHHLKSILESVIFEKLSEIFDFEPNLLSSIYFKALQAK 626

Query: 427 EERLRRRKQRE--VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
                 +  R+   ++        LPGKL DC  +     E+FIVEGDSA GSAKQARNR
Sbjct: 627 LSDEEAKAARDLIRSKNNQYSSTILPGKLVDCISDDISRNEIFIVEGDSAAGSAKQARNR 686

Query: 485 SNQAVLPLRGKILNVASAGSEK-IRNNQQIMDLVQALGCRTRSQYR-------------- 529
             QA+LPL+GKILNV    + K I  N ++  L+ ALG       +              
Sbjct: 687 EIQAILPLKGKILNVEKIKNNKRIFENSELKSLITALGLNVNYDNKNLKNNNILSNNKKG 746

Query: 530 --------------------------------EEDLRYEKVIIMTDADVDGAHIASLLLT 557
                                           +  LRY KVIIMTDADVDG HI  LLLT
Sbjct: 747 KNSKKKSDLKNSRFESTQNNNNILNKKKDILVDNTLRYGKVIIMTDADVDGEHIRILLLT 806

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGT 586
           F Y+   ++IE  ++++  PPL++IT   
Sbjct: 807 FLYRFQKEIIENGNVYVACPPLYKITYNK 835



 Score = 99.5 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 607  HGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK 666
            +   K EI RFKGLGEM+A QL  T MD   R L+RV +N  + +        + LMG  
Sbjct: 934  NFSKKYEIQRFKGLGEMMADQLWNTTMDPTVRKLIRVTVNDAIRAN---DLIFS-LMGED 989

Query: 667  ADERFKFIQER 677
            +  R  FI E 
Sbjct: 990  SKLRKNFILEN 1000


>gi|291457727|ref|ZP_06597117.1| DNA gyrase subunit B [Bifidobacterium breve DSM 20213]
 gi|291380780|gb|EFE88298.1| DNA gyrase subunit B [Bifidobacterium breve DSM 20213]
          Length = 783

 Score =  306 bits (784), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 145/473 (30%), Positives = 220/473 (46%), Gaps = 38/473 (8%)

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR---- 299
               D    E+   P   EF   GG+K ++    +   +       G+   K   +    
Sbjct: 309 TEVVDGAFGEQPAHPRTVEFLHTGGVKDFVDFLSKGEPISDIWRIQGEGTYKEETQAVGE 368

Query: 300 ------------GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYA 346
                         V+ A+ W       I S+ N + T  GG H  G   A+T+ I+K  
Sbjct: 369 GGELHAQEIERTCGVDIALRWVNGYDTTIMSFVNIVETPGGGMHVDGFMNAITKQIRKAV 428

Query: 347 ELTQNKRAISII-------SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV--- 396
           E    K  +++         DD+    V +++  + EP+F GQTK  L +   +  V   
Sbjct: 429 EDNARKLKVNLKDSAMKVERDDIQAGLVAVVTARVAEPQFQGQTKDVLGTAQVKPIVTRL 488

Query: 397 -ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454
            +    +           ++ ++LE ++     R++ RK +E   RK A+    +P KL+
Sbjct: 489 TDKQFGEMITGSKRGYKEQSARVLEKIVGEMHARIQSRKAKEVTRRKNALESASMPAKLS 548

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC        ELFIVEGDSA G+AK ARN   QA+LP+RGKILNV  A   ++ +N++  
Sbjct: 549 DCQPGNDDVAELFIVEGDSALGTAKAARNAGFQALLPIRGKILNVQKASITQMLSNKECA 608

Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ++Q +G  +   +  E  RY K+I+MTDADVDGAHI  LLLT FY+ M  LIE  +++ 
Sbjct: 609 AIIQVVGAGSGQSFDIEQSRYHKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGYVYA 668

Query: 575 ISPPLFRI----TQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLK 629
             PPL RI    +   + +Y + ++     L +  K   G   +I R+KGLGEM A QL 
Sbjct: 669 AVPPLHRIALTGSHKGEYIYTYSDDELAGKLADLDKKRIGYNDDIQRYKGLGEMDADQLA 728

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           +T MD   R L R+ +           +  N LMG +   R +FI + A   D
Sbjct: 729 DTTMDPRTRMLRRIRMED----AAQASEIFNLLMGDEVPPRKQFIVDNADDFD 777



 Score =  260 bits (663), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 94/234 (40%), Positives = 123/234 (52%), Gaps = 26/234 (11%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
             + Y A  + +LEGL+ VR RPGMYIG TD + L H   E+IDN++DE +AG+ N I V
Sbjct: 2   PKEEYGAKDLSVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNSVDEALAGFCNNIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G + V DNGRGIPV+  PK    S +E++LT LHAG KF NS+Y   GGLHGVG 
Sbjct: 62  TLHTDGSVEVADNGRGIPVDKEPK-TGLSGVEVVLTKLHAGAKFGNSSYNAVGGLHGVGS 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPL------------------------SPLEK 195
           SVVNALS  L V V R        F +G P                         + LE 
Sbjct: 121 SVVNALSSRLDVEVDRDGKTHHMAFHQGHPGVYADADPVNPSPDSPFKRTRKNKPTELEI 180

Query: 196 KEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
             KV     GTRI +  DP+IF   A F   +L+   +  ++L   +K     +
Sbjct: 181 IGKVSPKTTGTRIRYWYDPEIFNKTAEFSYEQLIDRVRQTSFLVPGLKITIVDE 234


>gi|126734076|ref|ZP_01749823.1| DNA gyrase, B subunit [Roseobacter sp. CCS2]
 gi|126716942|gb|EBA13806.1| DNA gyrase, B subunit [Roseobacter sp. CCS2]
          Length = 326

 Score =  306 bits (783), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 117/322 (36%), Positives = 180/322 (55%), Gaps = 12/322 (3%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           +    ++Y A SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DN +DE +AG+A+
Sbjct: 4   DPQKQEDYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGHAD 63

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            + V ++ +G +TV DNGRGIPV  H +    S  E+I+T LHAGGKFD+++Y++SGGLH
Sbjct: 64  HVYVKINADGSVTVGDNGRGIPVGIHEE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGGLH 122

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD L + + R +     +F  G     L  +     ++GT +TF      
Sbjct: 123 GVGVSVVNALSDYLELRIWRDDKEHYARFEGGFTKEHLRVEGPANGRKGTEVTFLASTDT 182

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   F+ + L K  +  A+L+  V+      +        P K + ++ GG+K +++ 
Sbjct: 183 FSN-RDFEFSTLEKRLRELAFLNSGVRIILEDLR-----PAEPLKADLFYEGGVKEFVKY 236

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
              +++ +  +      E+       VE A+ W +   E+   + N I   +GGTH +G 
Sbjct: 237 LDRSKTPLMDDPIYVTGERDDI---GVEVAMWWNDSYNEMVLPFTNNIPQRDGGTHLAGF 293

Query: 335 RVALTRGIKKYAELTQNKRAIS 356
           R ALTR I KYA  T   +   
Sbjct: 294 RGALTRAIAKYATETGISKKEK 315


>gi|283783166|ref|YP_003373920.1| DNA gyrase, B subunit, C-terminal domain protein [Gardnerella
           vaginalis 409-05]
 gi|283441259|gb|ADB13725.1| DNA gyrase, B subunit, C-terminal domain protein [Gardnerella
           vaginalis 409-05]
          Length = 792

 Score =  306 bits (783), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 143/463 (30%), Positives = 221/463 (47%), Gaps = 38/463 (8%)

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGT 297
               P   EF   GG+K ++    +  ++      +G+                  ++ T
Sbjct: 328 NKHHPRVVEFLHNGGVKDFVDFLSKGEAVSDIWRISGEDTYVEETQAVDSAGDLHAQQVT 387

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
            +  V+ A+ W       I S+ N + T  GG H  G    LT+ I+K  E    K  ++
Sbjct: 388 RKCGVDIAMRWVNGYDSTIISFVNVVETPGGGMHVDGFLQGLTKQIRKAVEDNARKLKVN 447

Query: 357 II-------SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
           +         DD+    V +++V I EP+F GQTK  L +   +  V       F   + 
Sbjct: 448 LKDSNTKIERDDITAGLVAVVTVRIAEPQFQGQTKDVLGTAQVKPIVTKMTDAQFGEMIT 507

Query: 410 QNPIEATKL----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +     +     LE ++     R++ RK +E   RK A+    +P KL+DC        
Sbjct: 508 GSKRGFKEQSSRVLEKIVSEMHARIQARKTKEVTRRKNALESASMPPKLSDCQPGNDDVA 567

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           ELFIVEGDSA G+AK ARN + QA+LP+RGKILNV  A   ++ +N++   ++Q +G  +
Sbjct: 568 ELFIVEGDSALGTAKAARNSAFQALLPIRGKILNVQKASLAQMLSNKECAAIIQVVGAGS 627

Query: 525 RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-- 582
            + +     RY K+++MTDADVDGAHI  LLLT FY+ M  LIE  H++   PPL RI  
Sbjct: 628 GASFDISQARYNKIVMMTDADVDGAHIRILLLTLFYRYMRPLIEHGHVYAAVPPLHRIAL 687

Query: 583 --TQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRT 639
              +  + +Y + ++     L++ +  G     +I R+KGLGEM A QL +T MD   R 
Sbjct: 688 AGKRKGEYIYTYSDDELAGKLDDLQAKGIDFNSDIQRYKGLGEMDADQLADTTMDPRTRM 747

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           L R+ +       +   +  + LMG     R +FI + A   D
Sbjct: 748 LRRIRMED----AQQASEVFDLLMGDDVPPRKQFIVDNADDFD 786



 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 89/232 (38%), Positives = 122/232 (52%), Gaps = 26/232 (11%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + YDA S+ +LEGL+ VR RPGMYIG TD + L H   E+IDNA+DE +AG  + I V+L
Sbjct: 6   EQYDADSLTVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNAVDEALAGACDHIIVTL 65

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G + V DNGRGIPV+  PK    + +E++LT LHAG KF N++Y  +GGLHGVG SV
Sbjct: 66  HDDGSIEVADNGRGIPVDVEPK-TKLTGVEVVLTKLHAGAKFGNASYNAAGGLHGVGSSV 124

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK----------------------- 198
           VNALS  L V V R        F +G P    +   +                       
Sbjct: 125 VNALSLRLDVEVDRDGKTHHMAFHQGHPGVYSDADPEHPSPASPFKRTRKNKSTELEIIG 184

Query: 199 --VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
                  GTR+ +  DP+IF   A F   +L+   +  ++L   +K     +
Sbjct: 185 TVSPKTTGTRVRYWADPEIFNSTAHFSYEQLIARVRQTSFLVPGLKITVIDE 236


>gi|309801426|ref|ZP_07695553.1| DNA gyrase, B subunit, C-terminal domain protein [Bifidobacterium
           dentium JCVIHMP022]
 gi|308221941|gb|EFO78226.1| DNA gyrase, B subunit, C-terminal domain protein [Bifidobacterium
           dentium JCVIHMP022]
          Length = 778

 Score =  306 bits (783), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 147/458 (32%), Positives = 218/458 (47%), Gaps = 38/458 (8%)

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTV 302
             EEF   GG+K ++    +  ++      TG                   +K T    V
Sbjct: 319 RVEEFCHNGGVKDFVDFLSKGEAVSDIWRITGDDTYVEETQAVGEGGELHAQKVTRDCAV 378

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDD 361
           + A+ W +     + S+ N + T  GG H  G    +T+ I+K  E    K  +++   +
Sbjct: 379 DIAMRWTDGYDTTMRSFVNVVETPGGGMHVDGFLQGITKQIRKAVEDNARKLKVNLKDSN 438

Query: 362 L-------MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +       M   V +++V I EP+F GQTK  L +   +  V       F   +  +   
Sbjct: 439 MKVERDDIMAGLVAVVTVRIAEPQFQGQTKDVLGTAQVKPIVTRMTDRQFGEMITGSKRG 498

Query: 415 ATKL----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
             +     LE ++     R++ RK +E   RK A+    +P KL+DC        ELFIV
Sbjct: 499 YKEQSGRVLEKIVGEMHARIQARKTKEVTRRKNALESASMPPKLSDCQPGNDDVAELFIV 558

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           EGDSA G+AK ARN   QA+LP+RGKILNV  A   ++ +N++   ++Q +G  + + + 
Sbjct: 559 EGDSALGTAKAARNSGFQALLPIRGKILNVQKASLAQMLSNKECAAIIQVVGAGSGASFD 618

Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI----TQG 585
            E  RY K+I+MTDADVDGAHI  LLLT FY+ M  LIE  H++   PPL RI       
Sbjct: 619 IEQARYNKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGHVYAAVPPLHRIALTGAHK 678

Query: 586 TKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644
            + +Y + ++     L E  +KH     +I R+KGLGEM A QL +T MD   R L R+ 
Sbjct: 679 GEYIYTYSDDELAGKLSELERKHIAYNDDIQRYKGLGEMDADQLADTTMDPRTRMLRRIR 738

Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           +       +   +  + LMG     R  FI E A   D
Sbjct: 739 MED----AEQANEIFSLLMGDDVPPRKAFIVENADDFD 772



 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 103/292 (35%), Positives = 139/292 (47%), Gaps = 28/292 (9%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A DNY A S+ +LEGL+ VR RPGMYIG TD + L H   E+IDN++DE +AG  N I V
Sbjct: 2   AKDNYGAGSLTVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNSVDEALAGACNHIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G + V DNGRGIPV+  PK    + +E++LT LHAG KF NS+Y  SGGLHGVG 
Sbjct: 62  TLHSDGSVEVADNGRGIPVDVEPK-TKLTGVEVVLTKLHAGAKFGNSSYGASGGLHGVGS 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPL------------------------SPLEK 195
           SVVNALS  L V V R        F +G P                         + LE 
Sbjct: 121 SVVNALSSRLDVEVDRDGKTHHMSFHQGHPGVYADADPEHPSPDSPFKRTRKNRPTELEI 180

Query: 196 KEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--EIA 252
             KV     GTRI +  DP+IF D A F   +L+   +  ++L   +K     +   E  
Sbjct: 181 IGKVSPKTTGTRIRYWADPEIFNDTAEFSYEQLIDRVRQTSFLVPGLKITVIDENIPETG 240

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
           ++     +E      G    +    +      +     +   +       E 
Sbjct: 241 DESIDEMREIDVLADGTSDAVVDATDEVDDTDNIGSAIEGFDEVAVDNADEV 292


>gi|298253933|ref|ZP_06977520.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Gardnerella vaginalis 5-1]
 gi|297532076|gb|EFH71051.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Gardnerella vaginalis 5-1]
          Length = 796

 Score =  306 bits (783), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 143/463 (30%), Positives = 221/463 (47%), Gaps = 38/463 (8%)

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGT 297
               P   EF   GG+K ++    +  ++      +G+                  ++ T
Sbjct: 332 NKHHPRVVEFLHNGGVKDFVDFLSKGEAVSDIWRISGEDTYVEETQAVDSAGDLHAQQVT 391

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
            +  V+ A+ W       I S+ N + T  GG H  G    LT+ I+K  E    K  ++
Sbjct: 392 RKCGVDIAMRWVNGYDSTIISFVNVVETPGGGMHVDGFLQGLTKQIRKAVEDNARKLKVN 451

Query: 357 II-------SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
           +         DD+    V +++V I EP+F GQTK  L +   +  V       F   + 
Sbjct: 452 LKDSNTKIERDDITAGLVAVVTVRIAEPQFQGQTKDVLGTAQVKPIVTKMTDAQFGEMIT 511

Query: 410 QNPIEATKL----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +     +     LE ++     R++ RK +E   RK A+    +P KL+DC        
Sbjct: 512 GSKRGFKEQSSRVLEKIVSEMHARIQARKTKEVTRRKNALESASMPPKLSDCQPGNDDVA 571

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           ELFIVEGDSA G+AK ARN + QA+LP+RGKILNV  A   ++ +N++   ++Q +G  +
Sbjct: 572 ELFIVEGDSALGTAKAARNSAFQALLPIRGKILNVQKASLAQMLSNKECAAIIQVVGAGS 631

Query: 525 RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-- 582
            + +     RY K+++MTDADVDGAHI  LLLT FY+ M  LIE  H++   PPL RI  
Sbjct: 632 GASFDISQARYNKIVMMTDADVDGAHIRILLLTLFYRYMRPLIEHGHVYAAVPPLHRIAL 691

Query: 583 --TQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRT 639
              +  + +Y + ++     L++ +  G     +I R+KGLGEM A QL +T MD   R 
Sbjct: 692 AGKRKGEYIYTYSDDELAGKLDDLQAKGIDFNSDIQRYKGLGEMDADQLADTTMDPRTRM 751

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           L R+ +       +   +  + LMG     R +FI + A   D
Sbjct: 752 LRRIRMED----AQQASEVFDLLMGDDVPPRKQFIVDNADDFD 790



 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 89/232 (38%), Positives = 122/232 (52%), Gaps = 26/232 (11%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + YDA S+ +LEGL+ VR RPGMYIG TD + L H   E+IDNA+DE +AG  + I V+L
Sbjct: 6   EQYDADSLTVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNAVDEALAGACDHIIVTL 65

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +G + V DNGRGIPV+  PK    + +E++LT LHAG KF N++Y  +GGLHGVG SV
Sbjct: 66  HDDGSIEVADNGRGIPVDVEPK-TKLTGVEVVLTKLHAGAKFGNASYNAAGGLHGVGSSV 124

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK----------------------- 198
           VNALS  L V V R        F +G P    +   +                       
Sbjct: 125 VNALSLRLDVEVDRDGKTHHMAFHQGHPGVYSDADPEHPSPASPFKRTRKNKPTELEIIG 184

Query: 199 --VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
                  GTR+ +  DP+IF   A F   +L+   +  ++L   +K     +
Sbjct: 185 TVSPKTTGTRVRYWADPEIFNSTAHFSYEQLIARVRQTSFLVPGLKITVIDE 236


>gi|283456278|ref|YP_003360842.1| DNA gyrase subunit B [Bifidobacterium dentium Bd1]
 gi|283102912|gb|ADB10018.1| gyrB2 DNA gyrase subunit B [Bifidobacterium dentium Bd1]
          Length = 778

 Score =  306 bits (783), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 147/458 (32%), Positives = 218/458 (47%), Gaps = 38/458 (8%)

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTV 302
             EEF   GG+K ++    +  ++      TG                   +K T    V
Sbjct: 319 RVEEFCHNGGVKDFVDFLSKGEAVSDIWRITGDDTYVEETQAVGEGGELHAQKVTRDCAV 378

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDD 361
           + A+ W +     + S+ N + T  GG H  G    +T+ I+K  E    K  +++   +
Sbjct: 379 DIAMRWTDGYDTTMRSFVNVVETPGGGMHVDGFLQGITKQIRKAVEDNARKLKVNLKDSN 438

Query: 362 L-------MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +       M   V +++V I EP+F GQTK  L +   +  V       F   +  +   
Sbjct: 439 MKVERDDIMAGLVAVVTVRIAEPQFQGQTKDVLGTAQVKPIVTRMTDRQFGEMITGSKRG 498

Query: 415 ATKL----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
             +     LE ++     R++ RK +E   RK A+    +P KL+DC        ELFIV
Sbjct: 499 YKEQSGRVLEKIVGEMHARIQARKTKEVTRRKNALESASMPPKLSDCQPGNDDVAELFIV 558

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           EGDSA G+AK ARN   QA+LP+RGKILNV  A   ++ +N++   ++Q +G  + + + 
Sbjct: 559 EGDSALGTAKAARNSGFQALLPIRGKILNVQKASLAQMLSNKECAAIIQVVGAGSGASFD 618

Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI----TQG 585
            E  RY K+I+MTDADVDGAHI  LLLT FY+ M  LIE  H++   PPL RI       
Sbjct: 619 IEQARYNKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGHVYAAVPPLHRIALTGAHK 678

Query: 586 TKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644
            + +Y + ++     L E  +KH     +I R+KGLGEM A QL +T MD   R L R+ 
Sbjct: 679 GEYIYTYSDDELAGKLSELERKHIAYNDDIQRYKGLGEMDADQLADTTMDPRTRMLRRIR 738

Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           +       +   +  + LMG     R  FI E A   D
Sbjct: 739 MED----AEQANEIFSLLMGDDVPPRKAFIVENADDFD 772



 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 103/292 (35%), Positives = 139/292 (47%), Gaps = 28/292 (9%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A DNY A S+ +LEGL+ VR RPGMYIG TD + L H   E+IDN++DE +AG  N I V
Sbjct: 2   AKDNYGAGSLTVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNSVDEALAGACNHIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G + V DNGRGIPV+  PK    + +E++LT LHAG KF NS+Y  SGGLHGVG 
Sbjct: 62  TLHSDGSVEVADNGRGIPVDVEPK-TKLTGVEVVLTKLHAGAKFGNSSYGASGGLHGVGS 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPL------------------------SPLEK 195
           SVVNALS  L V V R        F +G P                         + LE 
Sbjct: 121 SVVNALSSRLDVEVDRDGKTHHMSFHQGHPGVYADADPEHPSPDSPFKRTRKNRPTELEI 180

Query: 196 KEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--EIA 252
             KV     GTRI +  DP+IF D A F   +L+   +  ++L   +K     +   E  
Sbjct: 181 IGKVSPKTTGTRIRYWADPEIFNDTAEFSYEQLIDRVRQTSFLVPGLKITVIDENIPETG 240

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
           ++     +E      G    +    +      +     +   +       E 
Sbjct: 241 DESIDEMREIDVPADGTSDAVVDATDEVDDTDNIGSAIEGFDEVAVDNADEV 292


>gi|306822520|ref|ZP_07455898.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Bifidobacterium
           dentium ATCC 27679]
 gi|304554065|gb|EFM41974.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Bifidobacterium
           dentium ATCC 27679]
          Length = 781

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 147/458 (32%), Positives = 218/458 (47%), Gaps = 38/458 (8%)

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTV 302
             EEF   GG+K ++    +  ++      TG                   +K T    V
Sbjct: 322 RVEEFCHNGGVKDFVDFLSKGEAVSDIWRITGDDTYVEETQAVGEGGELHAQKVTRDCAV 381

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDD 361
           + A+ W +     + S+ N + T  GG H  G    +T+ I+K  E    K  +++   +
Sbjct: 382 DIAMRWTDGYDTTMRSFVNVVETPGGGMHVDGFLQGITKQIRKAVEDNARKLKVNLKDSN 441

Query: 362 L-------MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +       M   V +++V I EP+F GQTK  L +   +  V       F   +  +   
Sbjct: 442 MKVERDDIMAGLVAVVTVRIAEPQFQGQTKDVLGTAQVKPIVTRMTDRQFGEMITGSKRG 501

Query: 415 ATKL----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
             +     LE ++     R++ RK +E   RK A+    +P KL+DC        ELFIV
Sbjct: 502 YKEQSGRVLEKIVGEMHARIQARKTKEVTRRKNALESASMPPKLSDCQPGNDDVAELFIV 561

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           EGDSA G+AK ARN   QA+LP+RGKILNV  A   ++ +N++   ++Q +G  + + + 
Sbjct: 562 EGDSALGTAKAARNSGFQALLPIRGKILNVQKASLAQMLSNKECAAIIQVVGAGSGASFD 621

Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI----TQG 585
            E  RY K+I+MTDADVDGAHI  LLLT FY+ M  LIE  H++   PPL RI       
Sbjct: 622 IEQARYNKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGHVYAAVPPLHRIALTGAHK 681

Query: 586 TKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644
            + +Y + ++     L E  +KH     +I R+KGLGEM A QL +T MD   R L R+ 
Sbjct: 682 GEYIYTYSDDELAGKLSELERKHIAYNDDIQRYKGLGEMDADQLADTTMDPRTRMLRRIR 741

Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           +       +   +  + LMG     R  FI E A   D
Sbjct: 742 MED----AEQANEIFSLLMGDDVPPRKAFIVENADDFD 775



 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 103/292 (35%), Positives = 139/292 (47%), Gaps = 28/292 (9%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A DNY A S+ +LEGL+ VR RPGMYIG TD + L H   E+IDN++DE +AG  N I V
Sbjct: 5   AKDNYGAGSLTVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNSVDEALAGACNHIVV 64

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G + V DNGRGIPV+  PK    + +E++LT LHAG KF NS+Y  SGGLHGVG 
Sbjct: 65  TLHSDGSVEVADNGRGIPVDVEPK-TKLTGVEVVLTKLHAGAKFGNSSYGASGGLHGVGS 123

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPL------------------------SPLEK 195
           SVVNALS  L V V R        F +G P                         + LE 
Sbjct: 124 SVVNALSSRLDVEVDRDGKTHHMSFHQGHPGVYADADPEHPSPDSPFKRTRKNRPTELEI 183

Query: 196 KEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--EIA 252
             KV     GTRI +  DP+IF D A F   +L+   +  ++L   +K     +   E  
Sbjct: 184 IGKVSPKTTGTRIRYWADPEIFNDTAEFSYEQLIDRVRQTSFLVPGLKITVIDENIPETG 243

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
           ++     +E      G    +    +      +     +   +       E 
Sbjct: 244 DESIDEMREIDVLADGTSDAVVDATDEVDDTDNIGSAIEGFDEVAVDNADEV 295


>gi|171742643|ref|ZP_02918450.1| hypothetical protein BIFDEN_01757 [Bifidobacterium dentium ATCC
           27678]
 gi|171278257|gb|EDT45918.1| hypothetical protein BIFDEN_01757 [Bifidobacterium dentium ATCC
           27678]
          Length = 781

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 147/458 (32%), Positives = 218/458 (47%), Gaps = 38/458 (8%)

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTV 302
             EEF   GG+K ++    +  ++      TG                   +K T    V
Sbjct: 322 RVEEFCHNGGVKDFVDFLSKGEAVSDIWRITGDDTYVEETQAVGEGGELHAQKVTRDCAV 381

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDD 361
           + A+ W +     + S+ N + T  GG H  G    +T+ I+K  E    K  +++   +
Sbjct: 382 DIAMRWTDGYDTTMRSFVNVVETPGGGMHVDGFLQGITKQIRKAVEDNARKLKVNLKDSN 441

Query: 362 L-------MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +       M   V +++V I EP+F GQTK  L +   +  V       F   +  +   
Sbjct: 442 MKVERDDIMAGLVAVVTVRIAEPQFQGQTKDVLGTAQVKPIVTRMTDRQFGEMITGSKRG 501

Query: 415 ATKL----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
             +     LE ++     R++ RK +E   RK A+    +P KL+DC        ELFIV
Sbjct: 502 YKEQSGRVLEKIVGEMHARIQARKTKEVTRRKNALESASMPPKLSDCQPGNDDVAELFIV 561

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           EGDSA G+AK ARN   QA+LP+RGKILNV  A   ++ +N++   ++Q +G  + + + 
Sbjct: 562 EGDSALGTAKAARNSGFQALLPIRGKILNVQKASLAQMLSNKECAAIIQVVGAGSGASFD 621

Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI----TQG 585
            E  RY K+I+MTDADVDGAHI  LLLT FY+ M  LIE  H++   PPL RI       
Sbjct: 622 IEQARYNKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGHVYAAVPPLHRIALTGAHK 681

Query: 586 TKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644
            + +Y + ++     L E  +KH     +I R+KGLGEM A QL +T MD   R L R+ 
Sbjct: 682 GEYIYTYSDDELAGKLSELERKHIAYNDDIQRYKGLGEMDADQLADTTMDPRTRMLRRIR 741

Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           +       +   +  + LMG     R  FI E A   D
Sbjct: 742 MED----AEQANEIFSLLMGDDVPPRKAFIVENADDFD 775



 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 103/292 (35%), Positives = 139/292 (47%), Gaps = 28/292 (9%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A DNY A S+ +LEGL+ VR RPGMYIG TD + L H   E+IDN++DE +AG  N I V
Sbjct: 5   AKDNYGAGSLTVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNSVDEALAGACNHIVV 64

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G + V DNGRGIPV+  PK    + +E++LT LHAG KF NS+Y  SGGLHGVG 
Sbjct: 65  TLHSDGSVEVADNGRGIPVDVEPK-TKLTGVEVVLTKLHAGAKFGNSSYGASGGLHGVGS 123

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPL------------------------SPLEK 195
           SVVNALS  L V V R        F +G P                         + LE 
Sbjct: 124 SVVNALSSRLDVEVDRDGKTHHMSFHQGHPGVYADADPEHPSPDSPFKRTRKNRPTELEI 183

Query: 196 KEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--EIA 252
             KV     GTRI +  DP+IF D A F   +L+   +  ++L   +K     +   E  
Sbjct: 184 IGKVSPKTTGTRIRYWADPEIFNDTAEFSYEQLIDRVRQTSFLVPGLKITVIDENIPETG 243

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
           ++     +E      G    +    +      +     +   +       E 
Sbjct: 244 DESIDEMREIDVPADGTSDAVVDATDEVDDTDNIGSAIEGFDEVAVDNADEV 295


>gi|194339113|gb|ACF49472.1| GyrB [Amycolatopsis taiwanensis]
          Length = 448

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 170/455 (37%), Positives = 255/455 (56%), Gaps = 19/455 (4%)

Query: 76  HLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILT 135
           HL  EV+DN++DE +AG+A  +EV+L  +G + VVD+GRGIPVE HP    KSTLEI+ T
Sbjct: 1   HLIQEVVDNSVDEAMAGFATKVEVTLLADGGVRVVDDGRGIPVEEHP-VHKKSTLEIVHT 59

Query: 136 TLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK 195
            LHAGGKFD+ +Y +SGGLHGVG+SVVNALS  L V   R  TI+ Q +    P   +E 
Sbjct: 60  VLHAGGKFDSESYAVSGGLHGVGVSVVNALSTALDVETIRDGTIWRQHYQHSEPGELIEV 119

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
                ++ GT  TF  DP IF     ++A  + +  Q  A+L+  +      ++   E  
Sbjct: 120 --GPTDRTGTSTTFWADPDIFET-TTYNAETVARRLQEMAFLNKGLSIVLRDERVTEEDA 176

Query: 256 GIP--------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307
                      ++  +Y+PGGL+ +++    ++  I   + +   +  G     VE A+ 
Sbjct: 177 ETDAVGQQARVKERVYYYPGGLEDFVKHINGSKEPIHPSVISFDAKGDG---LEVEVAMQ 233

Query: 308 WCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMI 364
           W     P + ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  +D+  
Sbjct: 234 WNSSYTPSVHTFANTINTHEGGTHEEGFRAALTRVVNVYARDKKLLKEKDENLSGEDVRE 293

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
               I+S+ + EP+F GQTKTKL + +A+  V+    +    +  +NP EA  ++   + 
Sbjct: 294 GLAAIVSIKLAEPQFEGQTKTKLGNSEAKSFVQAKTNEWLADWFERNPGEAKTIINKAVS 353

Query: 425 RSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483
            ++ R+  R+ R+ V RK A+    LPGKL DC        EL+IVEGDSAGGSAK+ R 
Sbjct: 354 SAQARMAARRARDLVRRKGALDIGGLPGKLKDCQSTNPEECELYIVEGDSAGGSAKEGRE 413

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
              QA+LP+RGKI+NV  A  +++  N ++  L+ 
Sbjct: 414 SRFQAILPIRGKIINVEKARIDRVLKNTEVQSLIT 448


>gi|308234814|ref|ZP_07665551.1| DNA gyrase, B subunit, C-terminal domain protein [Gardnerella
           vaginalis ATCC 14018]
          Length = 599

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 142/463 (30%), Positives = 224/463 (48%), Gaps = 38/463 (8%)

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGT 297
               P   EF   GG++ ++    + +++      +G+                  ++ T
Sbjct: 135 NKHHPRVVEFLHNGGVRDFVDFLSKGQAVSDIWRISGEDTYVEETQAVDSAGDLHAQQVT 194

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
            +  V+ A+ W       I S+ N + T  GG H  G    LT+ I+K  E    K  ++
Sbjct: 195 RKCGVDIAMRWVNGYDSTIISFVNVVETPGGGMHVDGFLQGLTKQIRKAVEDNARKLKVN 254

Query: 357 II-------SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL- 408
           +         DD++   V +++V I EP+F GQTK  L +   +  V       F   + 
Sbjct: 255 LKDSNTKIERDDILAGMVAVVTVRIAEPQFQGQTKDVLGTAQVKPIVTKMTDAQFGEMIS 314

Query: 409 ---VQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
                   ++ ++LE ++     R++ RK +E   RK A+    +P KL+DC        
Sbjct: 315 GSKRGFKEQSARVLEKIVSEMHARIQARKTKEVTRRKNALESASMPPKLSDCQPGNDDVA 374

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           ELFIVEGDSA G+AK ARN + QA+LP+RGKILNV  A   ++ +N++   ++Q +G  +
Sbjct: 375 ELFIVEGDSALGTAKAARNSAFQALLPIRGKILNVQKASLAQMLSNKECAAIIQVVGAGS 434

Query: 525 RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-- 582
            + +     RY K+++MTDADVDGAHI  LLLT FY+ M  LIE  H++   PPL RI  
Sbjct: 435 GASFDISQARYNKIVMMTDADVDGAHIRILLLTLFYRYMRPLIENGHVYAAVPPLHRIAL 494

Query: 583 --TQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRT 639
                 + +Y + ++     L++ +  G     +I R+KGLGEM A QL +T MD   R 
Sbjct: 495 AGKHKGEYIYTYSDDELAGKLDDLQAKGIDFNSDIQRYKGLGEMDADQLADTTMDPRTRM 554

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           L R+ +       +   +  + LMG     R +FI + A   D
Sbjct: 555 LRRIRMED----AQQASEVFDLLMGDDVPPRKQFIVDNADDFD 593



 Score = 37.5 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 22/50 (44%)

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
                GTR+ +  DP+IF   A F   +L+   +  ++L   ++     +
Sbjct: 2   SPKTTGTRVRYWADPEIFNSTARFSYEQLIDRVRQTSFLVPGLRITVIDE 51


>gi|156087396|ref|XP_001611105.1| DNA gyrase subunit B [Babesia bovis T2Bo]
 gi|154798358|gb|EDO07537.1| DNA gyrase subunit B, putative [Babesia bovis]
          Length = 944

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 177/606 (29%), Positives = 270/606 (44%), Gaps = 65/606 (10%)

Query: 3   DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRP 62
           +++ +       + + +S   ++  E+ D P       S+ Y    I +L+GLE VR RP
Sbjct: 110 NETDESVVPDNTELEAASSVNQEYVELQDGPEVPRPRLSE-YSTDDIVVLQGLEAVRKRP 168

Query: 63  GMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122
           GMYIG T E  LH L  E++DN++DE +AG  N I V+L  +G   + DNGRGIP +   
Sbjct: 169 GMYIGNTTETGLHQLLFEILDNSVDEYLAGCCNKITVTLRADGSAEISDNGRGIPCDVSE 228

Query: 123 KFPNKSTLEIILTTLHAGGKFDN------------------------------------- 145
           K   KS LE +LT LH+GGKF++                                     
Sbjct: 229 K-TGKSGLETVLTVLHSGGKFNDTTSKPTPEDQVDEFYDTHISRKFRSQHVRGLRKRLKD 287

Query: 146 ---STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
              + YE + GLHGVG+SVVNALS  L   V +    +S + SRG+   PL    K   +
Sbjct: 288 ASSNPYEYASGLHGVGLSVVNALSAWLRADVYKGTKQYSIQLSRGMVTEPLSV-SKCAKR 346

Query: 203 RGTRITFRPDPKIFGDKAG--------------FDAARLLKMTQSKAYLSGRVKTCWSCD 248
            GT I+F PD                       F+   +    +  +Y++  +      +
Sbjct: 347 TGTTISFMPDYDHVFIAHHDHQVDTECPGCASAFNHDTVRNRIEELSYVNPMLTLRLVDE 406

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIA 307
           + + E     E E F   GG + +LQ  +++R  +           K G     V  + A
Sbjct: 407 RLVNEDGSFHE-ETFMHKGGTREFLQDIIKDRVPLYKSANIINIRGKSGGVEVEVSLSWA 465

Query: 308 WCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
                 ++  + N + T   GTH  G + A+T+ +            +A SI  + +   
Sbjct: 466 AETYAAQLKGFANNVSTS-AGTHIEGFKAAITKAVNHACRRAGLFKHKAPSISGEFIREG 524

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              I+SV +   EF GQTK+KL +  A+  VE  +    +  L ++P   T +    I  
Sbjct: 525 LTAIISVKLMGAEFDGQTKSKLGNQIARTAVERIVSYQMNEILEKHPQLLTAIYNKSIAA 584

Query: 426 SEERLRRRKQRE--VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483
                  +  +E    +        LP KL+DC+ N    TELFIVEG+SA G+AKQARN
Sbjct: 585 KRAFEVAKHAKELVRQKNANFLTTGLPAKLSDCTSNDIGLTELFIVEGESAAGNAKQARN 644

Query: 484 RSNQAVLPLRGKILNVASAGSE-KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           R  QAVLPL+GKILN+    S+ K+  N++I  L+ ++G     Q   +D       ++ 
Sbjct: 645 RRFQAVLPLKGKILNIEKISSDLKVMENEEIKLLISSIGLAVNPQTWRQDTLSHVENMVP 704

Query: 543 DADVDG 548
            +  D 
Sbjct: 705 TSTRDA 710



 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 65/235 (27%), Positives = 97/235 (41%), Gaps = 41/235 (17%)

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVD 547
           A  P+   +    ++ S+ + NN               S   +  LRY K+I++TDADVD
Sbjct: 713 ATGPVGTTVDTTEASSSDSVDNNNVTATDNLGNIPVDASSLAQLPLRYGKIILLTDADVD 772

Query: 548 GAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT---QGTKSV---------YAHDEE 595
           GAH+  LLL   ++    L E   +++  PPL+RIT   +G K+          YA  EE
Sbjct: 773 GAHLRILLLGLLFRICPQLYEHGRVYIACPPLYRITNMRKGNKARNGPNASAYTYAWSEE 832

Query: 596 HKQKILE-----------------------EFKKHGKGKIEISRFKGLGEMLASQLKETA 632
                +                        E K      I + RFKGLGEM+A QL +T 
Sbjct: 833 ELPIAINKEMAPYNLDSVPSEDIADTEQTPEIKPDSMRGITVQRFKGLGEMMAQQLWDTT 892

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS--FIDDVG 685
           M+ +KR L R+ +   +         +  LMG     R +FI   A    + D+ 
Sbjct: 893 MNPDKRILRRISVQDGMR----ASKMLELLMGGDVQSRKEFIFTHADAFQLHDLD 943


>gi|119026028|ref|YP_909873.1| DNA gyrase subunit B [Bifidobacterium adolescentis ATCC 15703]
 gi|154488793|ref|ZP_02029642.1| hypothetical protein BIFADO_02100 [Bifidobacterium adolescentis
           L2-32]
 gi|118765612|dbj|BAF39791.1| DNA gyrase subunit B [Bifidobacterium adolescentis ATCC 15703]
 gi|154082930|gb|EDN81975.1| hypothetical protein BIFADO_02100 [Bifidobacterium adolescentis
           L2-32]
          Length = 774

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 148/463 (31%), Positives = 217/463 (46%), Gaps = 38/463 (8%)

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGT 297
           KY     EEF   GG+K ++    +  ++       G+                  +K T
Sbjct: 310 KYPHARVEEFCHTGGVKDFVDFLSKGEAVSDIWRIAGEDTYVEETQAVGDDGELHAQKVT 369

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
               V+ A+ W       + S+ N + T  GG H  G    +T+ ++K  E    K  ++
Sbjct: 370 RDCAVDIAMRWTNGYDTTMRSFVNVVETPGGGMHVDGFLQGITKQVRKAIEDNARKLKVN 429

Query: 357 IISDDLM-------ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
           +    +           V +++V I EP+F GQTK  L +   +  V       F   + 
Sbjct: 430 LKDSHMKVERDDILAGLVAVVTVRIAEPQFQGQTKDVLGTAQVKPIVSRMTDKQFGEMIT 489

Query: 410 QNPIEATKL----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +     +     LE ++     R++ RK +E   RK A+    +P KL+DC        
Sbjct: 490 GSKRGYKEQSGRVLEKIVGEMHARVQARKTKEVTRRKNALESASMPPKLSDCQPGNDDVA 549

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           ELFIVEGDSA G+AK ARN   QA+LP+RGKILNV  A   ++ +N++   ++Q +G  +
Sbjct: 550 ELFIVEGDSALGTAKAARNSGFQALLPIRGKILNVQKASLAQMLSNKECAAIIQVVGAGS 609

Query: 525 RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-- 582
            + +  E  RY K+I+MTDADVDGAHI  LLLT FY+ M  LIE  H++   PPL RI  
Sbjct: 610 GASFDIEQARYNKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEYGHVYAAVPPLHRIAL 669

Query: 583 --TQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
             T   + +Y + ++     L E  KKH     +I R+KGLGEM A QL +T MD   R 
Sbjct: 670 TGTHKGEYIYTYSDDELAGKLAELDKKHIGYNEDIQRYKGLGEMDADQLADTTMDPRTRM 729

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           L R+ +       +      + LMG     R  FI E A   D
Sbjct: 730 LRRIRMED----AEQASHIFSLLMGDDVPPRKAFIVENADDFD 768



 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 96/234 (41%), Positives = 124/234 (52%), Gaps = 26/234 (11%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
           A DNY A S+ +LEGL+ VR RPGMYIG TD + L H   E+IDNA+DE +AG  N I V
Sbjct: 2   AKDNYGAESLTVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNAVDEALAGACNHIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G + V DNGRGIPV+  PK    + +E++LT LHAG KF NS+Y  SGGLHGVG 
Sbjct: 62  TLHDDGSVEVADNGRGIPVDVEPK-TKLTGVEVVLTKLHAGAKFGNSSYGASGGLHGVGS 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--------------------- 198
           SVVNALS  L V V R        F +G P    +   +                     
Sbjct: 121 SVVNALSSRLDVEVDRDGKTHHMAFHQGHPGVYSDVDPEHPSPDSPFKKTRKNRPTELEI 180

Query: 199 ----VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
                    GTRI +  DP+IF D A F   +L+   +  ++L   +K     +
Sbjct: 181 IGKVSPKTTGTRIRYWADPEIFNDTAEFSYDQLIDRVRQTSFLVPGLKITVIDE 234


>gi|311114491|ref|YP_003985712.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Gardnerella
           vaginalis ATCC 14019]
 gi|310945985|gb|ADP38689.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Gardnerella
           vaginalis ATCC 14019]
          Length = 786

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 142/463 (30%), Positives = 224/463 (48%), Gaps = 38/463 (8%)

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGT 297
               P   EF   GG++ ++    + +++      +G+                  ++ T
Sbjct: 322 NKHHPRVVEFLHNGGVRDFVDFLSKGQAVSDIWRISGEDTYVEETQAVDSAGDLHAQQVT 381

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
            +  V+ A+ W       I S+ N + T  GG H  G    LT+ I+K  E    K  ++
Sbjct: 382 RKCGVDIAMRWVNGYDSTIISFVNVVETPGGGMHVDGFLQGLTKQIRKAVEDNARKLKVN 441

Query: 357 II-------SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL- 408
           +         DD++   V +++V I EP+F GQTK  L +   +  V       F   + 
Sbjct: 442 LKDSNTKIERDDILAGMVAVVTVRIAEPQFQGQTKDVLGTAQVKPIVTKMTDAQFGEMIS 501

Query: 409 ---VQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
                   ++ ++LE ++     R++ RK +E   RK A+    +P KL+DC        
Sbjct: 502 GSKRGFKEQSARVLEKIVSEMHARIQARKTKEVTRRKNALESASMPPKLSDCQPGNDDVA 561

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           ELFIVEGDSA G+AK ARN + QA+LP+RGKILNV  A   ++ +N++   ++Q +G  +
Sbjct: 562 ELFIVEGDSALGTAKAARNSAFQALLPIRGKILNVQKASLAQMLSNKECAAIIQVVGAGS 621

Query: 525 RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-- 582
            + +     RY K+++MTDADVDGAHI  LLLT FY+ M  LIE  H++   PPL RI  
Sbjct: 622 GASFDISQARYNKIVMMTDADVDGAHIRILLLTLFYRYMRPLIENGHVYAAVPPLHRIAL 681

Query: 583 --TQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRT 639
                 + +Y + ++     L++ +  G     +I R+KGLGEM A QL +T MD   R 
Sbjct: 682 AGKHKGEYIYTYSDDELAGKLDDLQAKGIDFNSDIQRYKGLGEMDADQLADTTMDPRTRM 741

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           L R+ +       +   +  + LMG     R +FI + A   D
Sbjct: 742 LRRIRMED----AQQASEVFDLLMGDDVPPRKQFIVDNADDFD 780



 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 89/239 (37%), Positives = 123/239 (51%), Gaps = 26/239 (10%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
             +    + YDA S+ +LEGL+ VR RPGMYIG TD + L H   E+IDNA+DE +AG  
Sbjct: 1   MVSNKDREQYDADSLTVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNAVDEALAGAC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I V+L  +G + V DNGRGIPV+  PK    + +E++LT LHAG KF N++Y  +GGL
Sbjct: 61  DHIIVTLHDDGSIEVADNGRGIPVDVEPK-TKLTGVEVVLTKLHAGAKFGNASYNAAGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGI----------------PLSPLEKKEK 198
           HGVG SVVNALS  L V V R        F +G                 P     K + 
Sbjct: 120 HGVGSSVVNALSLRLDVEVDRDGKTHHMAFHQGHPGVYSDADSMHPSPASPFKRTRKNKP 179

Query: 199 VR---------NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
                         GTR+ +  DP+IF   A F   +L+   +  ++L   ++     +
Sbjct: 180 TELEIIGTVSPKTTGTRVRYWADPEIFNSTARFSYEQLIDRVRQTSFLVPGLRITVIDE 238


>gi|66009818|gb|AAY42705.1| GyrB [Burkholderia pyrrocinia]
          Length = 637

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 173/474 (36%), Positives = 254/474 (53%), Gaps = 27/474 (5%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK-----------EKV 199
           SGGLHGVG+S VNALS  L +TV R       +F RGI    + +               
Sbjct: 1   SGGLHGVGVSCVNALSSWLRLTVRRGGKKRFMEFHRGIAQDRVLEMVDGVEVSPMLVTGD 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
              RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E      
Sbjct: 61  TENRGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD---- 115

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              F F GG+K +++   + ++ +   IF    EK G     VE A+ W +     +  +
Sbjct: 116 ---FAFAGGVKGFVEYINKTKTNLHPTIFHANGEKDGV---GVEVAMQWNDSYNENVLCF 169

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + E
Sbjct: 170 TNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPE 229

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F+ QTK KLVS + +  VE  +    + +L++ P++A  +   ++E +  R   RK R
Sbjct: 230 PKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPLDAKIICGKIVEAARARDAARKAR 289

Query: 437 EVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK
Sbjct: 290 EMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGK 349

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASL 554
           +LNV  A  +K+ +++QI+ LV ALGC         + LRY ++IIMTDADVDGAHI +L
Sbjct: 350 VLNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTL 409

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           LLTFFY++M D+IE+ ++++  PPL++I  G    Y  D+      +      G
Sbjct: 410 LLTFFYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQG 463


>gi|18266788|sp|O61078|TOP2_LEICH RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|6453822|gb|AAC05295.2| DNA topoisomerase II [Leishmania chagasi]
          Length = 1236

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 126/676 (18%), Positives = 242/676 (35%), Gaps = 73/676 (10%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTDEK-----------------------ALHHLFSEVI 82
           AS  + L  ++ V +RP MY+G  + +                        L  +  E++
Sbjct: 4   ASKYKKLTPIDHVLLRPEMYVGSIETQPTPMYIFDPEKGRMVWETMRVNQGLLKIVDEIL 63

Query: 83  DNAMDEVIAGYA----NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLH 138
            NA D +           I + +   G +TV ++G G+P+    +       E++   L 
Sbjct: 64  LNAADNINNSKGSVRQTYISIHISDTGEITVENDGAGLPI-VRSREHKMYIPEMVFGHLL 122

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF--SRGIPLSPLEKK 196
               ++N +   + G HG G  + N LS +  V            +     +  +P   +
Sbjct: 123 TSSNYNNDSTSTTAGRHGYGAKLTNILSTKFSVVCRTDGRESHMSWTDHMRMATAPRVNR 182

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAG----FDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
              + K  TR+ F PD   FG             L K     A +  +++   +      
Sbjct: 183 VDPKEKSVTRVKFMPDYAHFGFPNASISLDMKRVLHKRIMDLAAMFSKIEVRLNN----- 237

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
                     F F           L              T   G    +V +     +  
Sbjct: 238 --------VPFGFRTFTDYARLYSLPGLDGSMPPEPFVYTSPNG----SVAYVPQLTQSP 285

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSV 372
             I    N ++T  GGTH +     L   +         K    + ++ +      ++ +
Sbjct: 286 KRIVGVVNGVVTYNGGTHCNAAMDILDSCLDS-LSKNFKKNGKVVDTNRVQRHFTVLVFL 344

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
              +P+F  Q+K +LVS      +     + +        +EA          +E     
Sbjct: 345 IQTQPKFDSQSKARLVSTVTMPRMPKNTLEKYLE--RMPFLEAHVNSMDDQLANELNKEI 402

Query: 433 RKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG---SAKQARNRSNQAV 489
              R ++ KT I  +           +  +   L I EGDSA     ++  +  +    V
Sbjct: 403 GAGRRLSSKTLISAITKLVDATSSQPDGRNIRTLIITEGDSAKALALNSLSSEQKKYCGV 462

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDADVDG 548
            PLRGK+LNV +   ++++  + + DL  +LG     +YR   +LRY+++++MTD D DG
Sbjct: 463 FPLRGKLLNVRNKNLKRLKTCKGLQDLFLSLGLELGKEYRSPAELRYQRLLVMTDQDADG 522

Query: 549 AHIASLLLTFFYQEMYDLIEQ--KHLFLISPPLFRIT---QGTKSVYAHDEEHKQKILEE 603
           +HI  L++  F      L++    ++ L S P+ +I    +  + +  H      +    
Sbjct: 523 SHIKGLVINAFESLWPKLLQNNPGYISLFSTPIVKIKVSGKSKEVIAFHSFRDFHRW--- 579

Query: 604 FKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLM 663
            + H   +     +KGLG    ++ KE   D  K  + ++ +  D    +      +   
Sbjct: 580 QRAHPSARYTAKYYKGLGTSTTAEGKEYFADMEKNIM-QLTV--DARDHQLLDSVFDAA- 635

Query: 664 GTKADERFKFIQE-RA 678
             + + R +++ +  A
Sbjct: 636 --EVEWRKEWMTKANA 649


>gi|68138631|gb|AAY85993.1| GyrB [Burkholderia multivorans]
          Length = 639

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 172/477 (36%), Positives = 258/477 (54%), Gaps = 29/477 (6%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKK 196
           ++SGG  GVG+S VNALS  L +TV R       +F RG+             +SP++  
Sbjct: 1   KVSGGPAGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQDRVIEVVDGEEVSPMQVI 60

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
               N RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E   
Sbjct: 61  GDTEN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD- 117

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
                 F F GG+K +++   + +S +   IF    EK G     VE A+ W +     +
Sbjct: 118 ------FAFAGGVKGFVEYINKTKSNLHPTIFHVIGEKDGV---GVEVAMQWNDSYNENV 168

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV 
Sbjct: 169 LCFTNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETTGDDMREGLSCVLSVK 228

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + EP+F+ QTK KLVS + +  VE  +    + +L++ P +A  +   ++E +  R   R
Sbjct: 229 VPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAAR 288

Query: 434 KQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           K RE+ R+   +  + LPGKLADC +     +E++IVEGDSAGGSAKQ R+R  QA+LPL
Sbjct: 289 KAREMTRRKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQRRDRKFQAILPL 348

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHI 551
           RGK+LNV  A  +K+ +++QI+ LV ALGC         + LRY ++IIMTDADVDGAHI
Sbjct: 349 RGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHI 408

Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
            +LLLTFFY++M ++IE+ ++++  PPL+++  G    Y  D+      +      G
Sbjct: 409 RTLLLTFFYRQMPEMIERGYVYIAQPPLYKVKAGKDERYLKDDAELNAHMLRLALQG 465


>gi|66391811|ref|YP_238736.1| gp60plus39 [Aeromonas phage 31]
 gi|62114648|gb|AAX63496.1| gp60plus39 [Aeromonas phage 31]
          Length = 607

 Score =  304 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 133/657 (20%), Positives = 231/657 (35%), Gaps = 77/657 (11%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTD-----------------EKALHHLFSEVIDNAMDE 88
           +   ++L   E V +RP MY+G                       L  +  E+IDN++DE
Sbjct: 2   SDEFKVLTPREHVILRPNMYVGSVAYEPHERFLFGKFQSVSYVPGLVKIIDEIIDNSVDE 61

Query: 89  VIA---GYANLIEVSLDG-NGFLTVVDNGRGIPVENHPKFPN-KSTLEIILTTLHAGGKF 143
            I     +AN I++  D   G +TVVDNGRGIP                  T   AG  F
Sbjct: 62  GIRTDFKFANKIDIRFDLLEGSVTVVDNGRGIPQSMVETPDGEMPKPVAAWTQTMAGSNF 121

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D++   +S G++GVG S+ N  S +            +   S G      +   K    +
Sbjct: 122 DDTN-RVSMGMNGVGSSLTNFFSKKFIGETCDGKNFLTVTCSEGASNIDWK--TKPGKTK 178

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F PD K F  +        +   +  A      +  ++            +    
Sbjct: 179 GTSVYFIPDEKHFEGRTIDQQIIDIISDRITALSVVFPQIKFT---------INGQIASM 229

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTIL 323
            F    K +                    E           AI    E     SY N + 
Sbjct: 230 KFADYAKMFGD------------------ESLIVESDRFSIAICNSPEGFRQVSYVNGLN 271

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVF-IREPEFAGQ 382
              GG+H   L   ++    +     + K  I I    +      ++ V  +    F  Q
Sbjct: 272 IKNGGSHIDYLVDGISE---ELMPAIKKKHKIEISKARVKECLTMVVVVRGMSNLRFDSQ 328

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL-RRRKQREVNRK 441
           TK +L +      V++     F   L +  +    +L+ +IE +  R     K      +
Sbjct: 329 TKERLTNP--AGEVKSHFDLDF-KKLSKQIMNTDAILQPIIEAALARHLAAEKAAMTKAQ 385

Query: 442 TAIRKLRLPGKLADCSQ-NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
            A  K      +           T LF+ EG+SA G   + ++ +      LRGK++N  
Sbjct: 386 KAAAKTNCAKHIKAGEWGRNDIETTLFLTEGESAIGYLLKVKDENLHGGYALRGKVMNTW 445

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH-IASLLLTFF 559
                 +  N ++ D+    G    +       +Y+ + IMTDAD DG   I   LL FF
Sbjct: 446 GMKGSDVLKNNELSDICAITGLDLANPDDISQRKYKNIAIMTDADPDGQGSIYPCLLAFF 505

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
            +    L ++  +  +  P+  + +G    + +     +K  +++K       ++   KG
Sbjct: 506 AR-WPKLFDEGSVRFVKTPVVILNKGKNIKWFYTLTEFEKEKKDYK-----GWDLRYIKG 559

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           LG +   +  E   + N            ++   D ++    L+G  A  R +++ +
Sbjct: 560 LGSLREHEYSEVVNNPNY---------DIVDLGDDWEELFEMLLGDDAALRKEWMSQ 607


>gi|3510608|gb|AAC33553.1| topoisomerase IV subunit B [Chlamydia trachomatis]
          Length = 554

 Score =  303 bits (776), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 155/600 (25%), Positives = 257/600 (42%), Gaps = 57/600 (9%)

Query: 84  NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143
           NA+DE + GY + I ++ D    L++ D GRGIP+           +   ++ ++ G K+
Sbjct: 1   NAIDEFVMGYGHTIHITGDA-HELSIRDEGRGIPLGK---------VIDCVSKINTGAKY 50

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
               +  S GL+GVG+  VNALS    V   R        FS+G  +    ++   ++  
Sbjct: 51  TQDVFHFSVGLNGVGLKAVNALSQHFSVRSVRNKKFLKASFSKG--ILLHTEQGATQDPD 108

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F PD ++F +   F    L K  +   YL   +   ++ ++              
Sbjct: 109 GTEVVFSPDHELFEN-FSFQVEFLKKKIRQYTYLHPGLTIIYNGERI------------- 154

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTIL 323
               GL    + +++   L S   F                       + +  S+ N   
Sbjct: 155 VSTRGLLDLFEEEVQTPLLYSPITFQYS--------DLAFLFSHTETSSEQYFSFVNGQE 206

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           T +GGTH    +  + +G+ ++          +  S D+     G +++ I  P F  QT
Sbjct: 207 TTDGGTHLVAFKEGIVKGVNEFFG-------KNFSSQDIREGLAGCIAIKIASPIFESQT 259

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443
           K KL + + +  +   +++     L +NP  A ++ E +    + R   +  ++  +   
Sbjct: 260 KNKLGNTNIRAELAKRVKEAVLSSLKKNPSSAERIQEKIKLNEKTRKNAQFLKQELKDKQ 319

Query: 444 IRKLRLPGKLADCSQN------IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
            +      KL DC  +          + +FI EG+SA  S   +RN   QAV  LRGK +
Sbjct: 320 KKLHYKIPKLRDCKFHLTDNSLYGKNSSIFITEGESASASILASRNPLTQAVFSLRGKPM 379

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557
           NV S+  E I  N ++  L  ALG    S    ++LRY +VI+ TDADVDG HI +L++T
Sbjct: 380 NVFSSKEETIYKNDELFYLATALGLHKDSL---QNLRYNQVILATDADVDGMHIRNLMIT 436

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
           FF +    L+   HLF++  PLF++     + Y + EE K   +E   K  +  +EI+RF
Sbjct: 437 FFLKTFLPLVASNHLFILETPLFKVCHKDATFYCYSEEEKLSTIEHIGKK-ESSLEITRF 495

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           KGLGE+   + K          L  V +       +     +   MG    ER  FI E 
Sbjct: 496 KGLGEISPKEFKSFIG--ADMRLTPVSL----RDTETLDTLLQFYMGKNTKERRLFIIEN 549


>gi|37651488|ref|NP_932362.1| gp60plus39 [Aeromonas phage 44RR2.8t]
 gi|34732788|gb|AAQ81326.1| topoisomerase II large subunit [Aeromonas phage 44RR2.8t]
          Length = 607

 Score =  303 bits (776), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 133/657 (20%), Positives = 232/657 (35%), Gaps = 77/657 (11%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTD-----------------EKALHHLFSEVIDNAMDE 88
           +   ++L   E V +RP MY+G                       L  +  E+IDN++DE
Sbjct: 2   SDEFKVLTPREHVILRPNMYVGSVAYEPHERFLFGKFQSVSYVPGLVKIIDEIIDNSVDE 61

Query: 89  VIA---GYANLIEVSLDG-NGFLTVVDNGRGIPVENHPKFPN-KSTLEIILTTLHAGGKF 143
            I     +AN I++  D   G +TVVDNGRGIP                  T   AG  F
Sbjct: 62  GIRTDFKFANKIDIRFDLLEGSVTVVDNGRGIPQSMVETPDGEMPKPVAAWTQTMAGSNF 121

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D++   +S G++GVG S+ N  S +            +   S G      E   K    +
Sbjct: 122 DDTN-RVSMGMNGVGSSLTNFFSKKFIGETCDGKNFLTVTCSEGASNIDWE--TKPGKIK 178

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F PD K F  +        +   +  A      +  ++            +    
Sbjct: 179 GTSVYFIPDEKHFEGRTIDQQIIDIISDRITALSVVFPQIKFT---------INGQIASM 229

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTIL 323
            F    K +                    E           AI    E     SY N + 
Sbjct: 230 KFADYAKMFGD------------------ESLIVESDRFSIAICNSPEGFRQVSYVNGLN 271

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVF-IREPEFAGQ 382
              GG+H   L   ++    +     + K  I I    +      ++ V  +    F  Q
Sbjct: 272 IKNGGSHIDYLVDGISE---ELMPAIKKKHKIEISKARVKECLTMVVVVRGMSNLRFDSQ 328

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL-RRRKQREVNRK 441
           TK +L +      V++     F   L +  +    +L+ +IE +  R     K      +
Sbjct: 329 TKERLTNP--AGEVKSHFDLDF-KKLSKQIMNTDAILQPIIEAALARHLAAEKAAMTKAQ 385

Query: 442 TAIRKLRLPGKLADCSQ-NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
            A  K      +           T LF+ EG+SA G   + ++ +      LRGK++N  
Sbjct: 386 KAAAKTNCAKHIKAGEWGRNDIETTLFLTEGESAIGYLLKVKDENLHGGYALRGKVMNTW 445

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH-IASLLLTFF 559
                 +  N ++ D+    G    +       +Y+ + IMTDAD DG   I   LL FF
Sbjct: 446 GMKGSDVLKNNELSDICAITGLDLANPDDISQRKYKNIAIMTDADPDGQGSIYPCLLAFF 505

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
            +    L ++  +  +  P+  + +G  + + +     +K  +++K       ++   KG
Sbjct: 506 AR-WPKLFDEGSVRFVKTPVVILNKGKNTKWFYTLTEFEKEKKDYK-----GWDLRYIKG 559

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           LG +   +  +   + N            ++   D ++    L+G  A  R +++ +
Sbjct: 560 LGSLREHEYSDVVNNPNY---------DIVDLGDDWEELFEMLLGDDAALRKEWMSQ 607


>gi|311992762|ref|YP_004009629.1| gp60plus39 DNA topoisomerase subunit [Acinetobacter phage Acj61]
 gi|295815051|gb|ADG35977.1| gp60plus39 DNA topoisomerase subunit [Acinetobacter phage Acj61]
          Length = 606

 Score =  303 bits (775), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 135/656 (20%), Positives = 236/656 (35%), Gaps = 81/656 (12%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTD-----------------EKALHHLFSEVIDNAMDE 88
            + I+IL   E +  R GMYIG +                     L  +  E+IDN++DE
Sbjct: 3   NNEIKILSDKEHIIKRSGMYIGSSANEEHERFVFGQFQKIKYVPGLVKIIDEIIDNSIDE 62

Query: 89  VIAG---YANLIEVSLDGNGFLTVVDNGRGIPVEN--HPKFPNKSTLEIILTTLHAGGKF 143
            I     +AN I+V++     ++V DNGRGIP      P+           T   AGG F
Sbjct: 63  AIRTNFQFANKIDVTVSP-HLVSVSDNGRGIPQAMITTPEGEQIPGPVAAWTRPKAGGNF 121

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
            + +   +GG++GVG S+ N  S              + K    +     +   K   ++
Sbjct: 122 GDDSERKTGGMNGVGSSLTNIFSTIFTGITCDGTNTITVKCKDNMDSIDWKS--KAGGRQ 179

Query: 204 GTRITFRPDPKIFGDKA--GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           GT ++F PD   F  +         +    Q+ + +   +   ++  + I          
Sbjct: 180 GTSVSFEPDFSHFDCEIIGDQVIKIIEDRLQTLSVVYPDIAFKFNGTRVIGN-------- 231

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
              F    K + +  L   +                        I   ++     +Y N 
Sbjct: 232 ---FKKYAKQFDEHMLVMDT------------------EKCAIGIGRSDDGFRQLTYVNN 270

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVF-IREPEFA 380
           I T  GG+H   +   L     +   L + K  I I    +      ++ V  +    F 
Sbjct: 271 IHTKNGGSHIDYVMDELA---NEMIPLIKRKHKIDINKARIKECITVVMFVRDMSNMRFD 327

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
            QTK +L S   +     +  D     L +  + + ++L  +IE    R    ++    +
Sbjct: 328 SQTKERLTSPWGEI---KSHIDIDIKKLARMFVNSEEILMPIIEAVLARKLAAEKAAETK 384

Query: 441 KTAIRKLRLPGKL--ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            +         K   A+        T LF+ EGDSA G     RNR      PLRGK +N
Sbjct: 385 ASKAASRAKVAKHIKANAYGKEDIETTLFLTEGDSAIGYLLSTRNRELHGGYPLRGKFMN 444

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
                   I  N++  D+    G     +   E L Y  + IMTDADVDG       L  
Sbjct: 445 TWGMLPSDILKNKESFDICAITGLVFGEKA--EGLNYRNIAIMTDADVDGTGSIYPSLLA 502

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           F+    +L EQ  +  +  P++   +G +  + +  +  + + +E K            K
Sbjct: 503 FFANWPELFEQGRIKFVKTPVWICQKGKEQKWFYTSDEYEAVKDELK-----GWNARYIK 557

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
           GLG +   + ++   + +            +   ++ ++    L+G  +  R  ++
Sbjct: 558 GLGSLEVDEYEKVINEPHY---------DVVKLPENWKEHFEMLLGNDSAPRKVWM 604


>gi|239735457|dbj|BAH70495.1| gyrase B subunit [Cardinium endosymbiont of Culicoides arakawae]
          Length = 478

 Score =  303 bits (775), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 184/485 (37%), Positives = 269/485 (55%), Gaps = 19/485 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
             +Y+ISGGLHGVGIS VNALSD L   V R   I+ Q++++GIPL P+++  +  N RG
Sbjct: 1   KDSYKISGGLHGVGISCVNALSDRLEAIVYRDGKIYKQEYAKGIPLYPVKEMGET-NLRG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I F PD  IF     ++   +    Q  AYL+  +K      +E  ++   P  + FY
Sbjct: 60  TTIHFAPDHSIFTTTV-YNLHTITNRLQELAYLNVGLKMTLEDLREKDDQG-NPMHQAFY 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
             GGL+ ++      +  I       + EK       V+ A+ +       + SY N I 
Sbjct: 118 SEGGLREFVSYLDSTKESIMPAPIFVEGEKNDV---VVQVAMTYNTGYSETVVSYVNNIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGG H +G R ALTR +K YA+ +    K  I II DD       ++SV + EP+F G
Sbjct: 175 TVEGGMHVTGFRRALTRTLKSYADKSGLLEKAKIEIIGDDFREGLTAVVSVKVAEPQFEG 234

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNR 440
           QTKTKL + + Q  VE  + +   +YL ++P EA  ++  VI      +  R+ +  V R
Sbjct: 235 QTKTKLGNAEVQGAVETCVAEVLHYYLEEHPKEAKLIVAKVIVAAQARQAARKAREMVQR 294

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K  +    LPGKLADCS+N     ELF+VEGDSAGG+AK  RNR  QA+LPL+GKILNV 
Sbjct: 295 KNVLTNSSLPGKLADCSENDPTLCELFLVEGDSAGGTAKMGRNRRFQAILPLKGKILNVE 354

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-----RSQYREEDLRYEKVIIMTDADVDGAHIASLL 555
            A   KI +N+Q+ +++ ALG              + LRY K++IMTDADVDG+HI +L+
Sbjct: 355 KAQVYKIYDNEQVRNMITALGVVIGTEGDDKAVHLDKLRYHKIVIMTDADVDGSHIRTLI 414

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE-- 613
           LTFF++ +  +IE+ +L++ SPPL+ + +  ++ Y   E  K   +  F     GK++  
Sbjct: 415 LTFFFRYLRSIIEKGYLYIASPPLYLVKRDKEAQYCWTESEKDSCITRFSARD-GKVDAV 473

Query: 614 -ISRF 617
            + R+
Sbjct: 474 YVQRY 478


>gi|239735459|dbj|BAH70496.1| gyrase B subunit [Cardinium endosymbiont of Culicoides ohmorii]
          Length = 478

 Score =  303 bits (775), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 184/485 (37%), Positives = 269/485 (55%), Gaps = 19/485 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
             +Y+ISGGLHGVGIS VNALSD L   V R   I+ Q++++GIPL P+++  +  N RG
Sbjct: 1   KDSYKISGGLHGVGISCVNALSDRLEAIVYRDGRIYKQEYAKGIPLYPVKEMGET-NLRG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I F PD  IF     ++   +    Q  AYL+  +K      +E  ++   P  + FY
Sbjct: 60  TTIHFAPDHSIFTTTV-YNLHTITNRLQELAYLNVGLKMTLKDLREKDDQG-NPMHQAFY 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
             GGL+ ++      +  I       + EK       V+ A+ +       + SY N I 
Sbjct: 118 SEGGLREFVSYLDSTKESIMPAPIFVEGEKNDV---VVQVAMTYNTGYSETVVSYVNNIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGG H +G R ALTR +K YA+ +    K  I II DD       ++SV + EP+F G
Sbjct: 175 TVEGGMHVTGFRRALTRTLKSYADKSGLLEKAKIEIIGDDFREGLTAVVSVKVAEPQFEG 234

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNR 440
           QTKTKL + + Q  VE  + +   +YL ++P EA  ++  VI      +  R+ +  V R
Sbjct: 235 QTKTKLGNAEVQGAVETCVAEVLHYYLEEHPKEAKLIVAKVIVAAQARQAARKAREMVQR 294

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K  +    LPGKLADCS+N     ELF+VEGDSAGG+AK  RNR  QA+LPL+GKILNV 
Sbjct: 295 KNVLTNSSLPGKLADCSENDPTLCELFLVEGDSAGGTAKMGRNRRFQAILPLKGKILNVE 354

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-----RSQYREEDLRYEKVIIMTDADVDGAHIASLL 555
            A   KI +N+Q+ +++ ALG              + LRY K++IMTDADVDG+HI +L+
Sbjct: 355 KAQVYKIYDNEQVRNMITALGIVIGTEGDDKAVHLDKLRYHKIVIMTDADVDGSHIRTLI 414

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE-- 613
           LTFF++ +  +IE+ +L++ SPPL+ + +  ++ Y   E  K   +  F     GK++  
Sbjct: 415 LTFFFRYLRSIIEKGYLYIASPPLYLVKRDKEAQYCWTESEKDSCITRFSAKD-GKVDAV 473

Query: 614 -ISRF 617
            + R+
Sbjct: 474 YVQRY 478


>gi|239735439|dbj|BAH70486.1| gyrase B subunit [Cardinium endosymbiont of Eotetranychus
           suginamensis]
          Length = 462

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 179/467 (38%), Positives = 263/467 (56%), Gaps = 16/467 (3%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+S VNALS  L VTV R   I+ Q++++GIP  P+++       RGT + F PD
Sbjct: 1   GLHGVGVSCVNALSXHLEVTVYRNGKIYKQEYAQGIPRYPVKEVGSTA-LRGTTVHFTPD 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
             IF     ++   ++   Q  AYL+  +       +E  E+   P K+ F+  GGL  +
Sbjct: 60  NSIFTTTV-YNLHTIVNRLQELAYLNVGLTMQLEDHRERDEQN-SPFKQTFHSEGGLLEF 117

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           +      +  I       + EK       V+ A+ +       + SY N I T EGG H 
Sbjct: 118 VSHLDSTKVSIMPAPILVEGEKNNVI---VQVAMTYNTGYSETVVSYVNNIHTIEGGMHV 174

Query: 332 SGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G + ALTR +K YA+ +    K  I II DD       ++SV + EP+F GQTKTKL +
Sbjct: 175 TGFKRALTRTLKSYADKSGLLEKAKIEIIGDDFREGLTAVISVKVAEPQFEGQTKTKLGN 234

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLR 448
            + Q  VE+ + +   +YL ++P EA  ++  VI   + R   RK RE+ ++   +    
Sbjct: 235 AEVQGAVESCVAEVLHYYLEEHPKEAKLIINKVIVAVQARQAARKAREMVQRKNVLMSNS 294

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS+      ELF+VEGDSAGG+AK  RNR  QA+LPL+GKILNV  A + KI 
Sbjct: 295 LPGKLADCSERDPALCELFLVEGDSAGGTAKIGRNRRFQAILPLKGKILNVEKAQTYKIY 354

Query: 509 NNQQIMDLVQALGCRT-----RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +N+Q+ +++ ALG              + LRY K++IMTDADVDG+HI +L+LTFF++ M
Sbjct: 355 DNEQVRNMITALGVSMGTDGTDQATHLDKLRYHKIVIMTDADVDGSHIRTLILTFFFRYM 414

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK-KHGK 609
            ++IE+ HL++ SPPL+ + +  +  Y   E  K+K ++E   K GK
Sbjct: 415 REVIEKGHLYIASPPLYLVKRDKEEHYCWTELEKEKRVKELSLKDGK 461


>gi|309806042|ref|ZP_07700065.1| putative DNA topoisomerase IV subunit B [Lactobacillus iners
           LactinV 03V1-b]
 gi|308167561|gb|EFO69717.1| putative DNA topoisomerase IV subunit B [Lactobacillus iners
           LactinV 03V1-b]
          Length = 343

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 131/355 (36%), Positives = 189/355 (53%), Gaps = 19/355 (5%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            + ++ YD SSI+IL GLE VR RPGMYIG TD + L+HL  E++DN++DE +AGY   I
Sbjct: 2   TNLNNTYDDSSIQILHGLEAVRKRPGMYIGSTDRQGLNHLVYEILDNSVDEAMAGYGKEI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V++  +  ++V D GRG+P   H       T+E+ILT LHAGGKF    Y+ SGGLHGV
Sbjct: 62  NVTIHPDNSVSVQDFGRGMPTGMH--ASGLPTIEVILTVLHAGGKFTEKNYQTSGGLHGV 119

Query: 158 GISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           G SVVNALS+ L V V R    F ++F   G P+  L+K     +K GT ITF+PD KIF
Sbjct: 120 GSSVVNALSEWLKVRVVRDGQAFEEEFVDGGKPVGTLKKLGATSDKTGTLITFKPDSKIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                +    + +  +  A+L   V+   + +++   K      +EFY+  G+K+++   
Sbjct: 180 STTI-YKYETIQERLREAAFLLKGVRFTLTDERDPQRK------DEFYYDDGIKSFVSYL 232

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335
            E++  I    F  + E        VE++  + +   E   S+ N + T +GG+HE+G R
Sbjct: 233 NEDKDTIGDI-FYFEGEIDNI---KVEFSGQYNDGYSENVVSFVNNVRTIDGGSHEAGAR 288

Query: 336 VALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREP--EFAGQTKTK 386
              TR    YA+     +         D       +LSV I E   EF GQTK  
Sbjct: 289 SGFTRAFNDYAKKQGLLKTKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGN 343


>gi|313621657|gb|EFR92450.1| DNA gyrase subunit B [Listeria innocua FSL S4-378]
          Length = 220

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 94/222 (42%), Positives = 136/222 (61%), Gaps = 6/222 (2%)

Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523
           +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I  N++I  +  A+G  
Sbjct: 4   SELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEEIRTIFTAMGTG 63

Query: 524 TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT 583
               +     RY K+IIMTDADVDGAHI +LLLT FY+ M  L++  ++++  PPL++I 
Sbjct: 64  FGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIK 123

Query: 584 QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRV 643
            G +  Y + +   +  L      G  K  I R+KGLGEM   QL +T M+   RTLL+V
Sbjct: 124 HGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYKGLGEMNPEQLWDTTMNPEHRTLLQV 181

Query: 644 EINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            I   +    D  ++   LMG + + R KFI++ A ++ ++ 
Sbjct: 182 NIKDAI----DADETFEMLMGDRVEPRRKFIEDNAQYVKNLD 219


>gi|270283844|ref|ZP_05965087.2| putative DNA gyrase subunit B [Bifidobacterium gallicum DSM 20093]
 gi|270277550|gb|EFA23404.1| putative DNA gyrase subunit B [Bifidobacterium gallicum DSM 20093]
          Length = 792

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 141/458 (30%), Positives = 221/458 (48%), Gaps = 38/458 (8%)

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR----------------GTV 302
             EEF   GG+  ++        + S    TG+   K   +                  V
Sbjct: 333 RVEEFVHTGGVTDFVDFLTVGEPISSIWRITGEGTYKEETQSVDANGDLHAEQVTRTCGV 392

Query: 303 EWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDD 361
           + A+ W       + S+ N + T   GTH  G   ++T+ ++K  E    K  +++    
Sbjct: 393 DIALRWTNGYDTIMRSFVNVVETPGNGTHVDGFLQSVTKLVRKAVEDNARKLKVNLKDSK 452

Query: 362 LM-------ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL----VQ 410
           +           V +++V I EP+F GQTK  L +   +  V+      F   +      
Sbjct: 453 MKVERDDILAGLVAVVTVRIAEPQFQGQTKDVLGTAPVKGVVQRMSDKQFAEMITGAKRG 512

Query: 411 NPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
              ++ ++LE ++     R++ RK +E   RK A+    +P KL+DC        ELFIV
Sbjct: 513 FKEQSMRVLEKIVGEMHARIQARKTKEVTRRKNALESASMPSKLSDCQPGNDDVAELFIV 572

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           EGDSA G+AK ARN S QA+LP+RGKILNV  A   ++ +N++   ++Q +G  + + + 
Sbjct: 573 EGDSALGTAKAARNSSFQALLPIRGKILNVQKASLAQMLSNKECAAIIQVVGAGSGATFD 632

Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI----TQG 585
            +  RY KVI+MTDADVDGAHI +LLLT FY+ M  L++  H++   PPL RI    ++ 
Sbjct: 633 LDQARYNKVIMMTDADVDGAHIRTLLLTLFYRYMRPLVDAGHVYAAVPPLHRIALNASRK 692

Query: 586 TKSVYAHDEEHKQKILEEFKKHGKGK-IEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644
            + +Y + ++     L E    G     +I R+KGLGEM A QL +T MD   R L R+ 
Sbjct: 693 GQYIYTYSDDELAGKLAELDAQGITYDPDIQRYKGLGEMDADQLADTTMDPRSRMLRRIT 752

Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
                   +   +  + LMG +   R +FI + A+  D
Sbjct: 753 ----AVEAQQANEIFSLLMGDEVPPRRQFIVDNANDFD 786



 Score =  262 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 97/242 (40%), Positives = 133/242 (54%), Gaps = 26/242 (10%)

Query: 32  SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91
           + +  + + +  YDA S+ +LEGL+ VR RPGMYIG TD + L H   E+IDN++DE +A
Sbjct: 2   TTSSQSATHNSGYDADSLVVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNSVDEALA 61

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G  + I V+L  +G + V DNGRGIPV+  PK    S +E++LT LHAGGKF +S+Y  S
Sbjct: 62  GACDHITVTLHTDGSIEVADNGRGIPVDIEPK-TKLSGVEVVLTKLHAGGKFGSSSYNAS 120

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL--------------------- 190
           GGLHGVG SVVNALS  L V V R        F +G P                      
Sbjct: 121 GGLHGVGSSVVNALSSRLDVEVDRDGKTHHMAFHKGHPGVYTDADPSQPSPDSPFKKTRK 180

Query: 191 ---SPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
              + LE   KV   + GTRI +  DP+IF D A F+  +L+   +  ++L   +K    
Sbjct: 181 NRPTELEIIGKVPPKRTGTRIRYWADPEIFNDTAQFNYEQLIDRVRQTSFLVPGLKITVI 240

Query: 247 CD 248
            +
Sbjct: 241 DE 242


>gi|219555776|ref|ZP_03534852.1| DNA gyrase subunit B [Mycobacterium tuberculosis T17]
          Length = 406

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 134/373 (35%), Positives = 193/373 (51%), Gaps = 36/373 (9%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A   + A D Y A+SI ILEGLE VR RPGMYIG T E+ LHHL  EV+DNA+DE +AGY
Sbjct: 41  AAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGY 100

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A  + V L  +G + V D+GRGIPV  H       T+++++T LHAGGKFD+  Y ISGG
Sbjct: 101 ATTVNVVLLEDGGVEVADDGRGIPVATH--ASGIPTVDVVMTQLHAGGKFDSDAYAISGG 158

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS  L V + R    +SQ + +  PL    K+     K G+ + F  DP
Sbjct: 159 LHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLGL--KQGAPTKKTGSTVRFWADP 216

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY------------------ 255
            +F     +D   + +  Q  A+L+  +    + ++   ++                   
Sbjct: 217 AVFETT-EYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASER 275

Query: 256 -------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
                     +   F++PGGL  +++     ++ I S I     +  G     VE AI W
Sbjct: 276 AAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGH---EVEIAIQW 332

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
                  + ++ NTI T EGGTHE G R ALT  + KYA+  +    +  ++  DD+   
Sbjct: 333 NAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREG 392

Query: 366 AVGILSVFIREPE 378
              ++SV + EP+
Sbjct: 393 LAAVISVKVSEPQ 405


>gi|311992997|ref|YP_004009863.1| DNA topoisomerase subunit [Enterobacteria phage CC31]
 gi|284177835|gb|ADB81501.1| DNA topoisomerase subunit [Enterobacteria phage CC31]
          Length = 614

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 140/663 (21%), Positives = 239/663 (36%), Gaps = 84/663 (12%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGG-----------------TDEKALHHLFSEVIDNAMDE 88
            + I+IL   E +  R GMYIG                  T    +  L  E+IDN++DE
Sbjct: 4   KNEIKILSDREHIIKRSGMYIGSSAMEAHERFLFGKFQSVTYVPGVIKLIDEIIDNSVDE 63

Query: 89  VIA---GYANLIEVSLDGNGFLTVVDNGRGIPVENH--PKFPNKSTLEIILTTLHAGGKF 143
            I     +AN I V L     + V DNGRG+P      P+           T   AGG F
Sbjct: 64  AIRTNFKFANKISVEL-KGNKVIVTDNGRGLPQAPVVTPEGDEIPGPVAAWTRPRAGGNF 122

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL-----EKKEK 198
            +     +GG++GVG ++ N  S                + S G           ++KE 
Sbjct: 123 GDDAERKTGGMNGVGSALTNIFSVTFAGATCDGQNEIIVRCSNGAENISWDSKPAKEKEF 182

Query: 199 VRNKRGTRITFRPDPKIFGDK--AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
           ++ K GTR++F PD   F        D + +L   Q+ A +                   
Sbjct: 183 IQTKTGTRVSFIPDFSHFESSGLTEVDESIVLDRLQTLAVVFP---------------DI 227

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT 316
             + +     GG K + +                  E           AI   ++     
Sbjct: 228 EFKFQGKKVNGGFKKFAKQ--------------FDEEAIVADEDNCSIAIGRSDDGFRQL 273

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVF-IR 375
           +Y N I T +GG+H   +   L+    +   + + K  + +    +      ++ V  + 
Sbjct: 274 TYVNNIHTSKGGSHVDLVVDELS---NELIPMLKRKYKLEVNKARIKECFTFVMFVRDMS 330

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
              F  QTK +L S   +  V+  L   +   L Q  +++  +   +IE    R    ++
Sbjct: 331 NMRFDSQTKERLTSPWGE--VKAHLNLDY-KKLAQQVMKSEAIHMPIIEAMLARKLAAEK 387

Query: 436 REVNRKTAIRKLRLPGKLADCSQNIAHGTE--LFIVEGDSAGGSAKQARNRSNQAVLPLR 493
               +           K            E  LF+ EGDSA G     R+R      PLR
Sbjct: 388 AAETKAAKAASKAKVAKHIKPELYGNDKEETTLFLTEGDSAIGYLLTTRDRKLHGGYPLR 447

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIAS 553
           GK LN     + +   N+++ D+    G         E+L Y+ + IMTDADVDG     
Sbjct: 448 GKFLNTWGMTAAEAMKNKEVFDICAITGLTIGED--YENLNYKNIAIMTDADVDGTGSIY 505

Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613
             L  F+     L E+  +  +  P+  +++G K  + +     +   +E         +
Sbjct: 506 PSLLAFFSNWPRLFEEGRIRFVKTPVIIMSKGDKQKWYYTAAEYEAEKDEL-----AGWK 560

Query: 614 ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKF 673
           +   KGLG +   +            +++      ++  ++ ++    +MG  A  R  +
Sbjct: 561 LRYIKGLGSLEEDEY---------ERVIQEPHYDVVSLPENWKELFEMVMGDDAAPRKVW 611

Query: 674 IQE 676
           + E
Sbjct: 612 MSE 614


>gi|294790964|ref|ZP_06756122.1| DNA gyrase subunit B [Scardovia inopinata F0304]
 gi|294458861|gb|EFG27214.1| DNA gyrase subunit B [Scardovia inopinata F0304]
          Length = 772

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 143/459 (31%), Positives = 215/459 (46%), Gaps = 38/459 (8%)

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG----------------THRGT 301
           P  EEF+  GG+  ++        + S     G    +                 T    
Sbjct: 312 PRVEEFFHEGGVVDFVDYLSHGEPISSIWHIEGDNTYEEETQQVGPDGDLHPAMVTRDCH 371

Query: 302 VEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISD 360
           V+ A+ W  +   +  S+ N + T  GG H  G   ++TR I++  E    K  +++   
Sbjct: 372 VDIALRWINDYETVLRSFVNVVETPGGGMHVDGFLNSITRNIRRSVEANARKLKVNLKDS 431

Query: 361 DLM-------ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
            +           V +++V I EP+F GQTK  L +   +  V     D F   +  +  
Sbjct: 432 SMKIERDDVLAGIVAVVTVRIAEPQFQGQTKDVLGTAQVKPIVAKMCDDQFGQMITGSKR 491

Query: 414 EATKLLEWVIER----SEER-LRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFI 468
                   V+E+       R   R+ +    RK A+    +P KL+DC        ELFI
Sbjct: 492 GFKDQSARVLEKITGEMHARVQARKTKEVTRRKNALESASMPAKLSDCQPGNDDIAELFI 551

Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528
           VEGDSA G+AK ARN S QA+LP+RGKILNV  A   +I  N++   ++Q +G  + + +
Sbjct: 552 VEGDSALGTAKAARNSSFQALLPIRGKILNVQKASVAQILANKECSAIIQVVGAGSGATF 611

Query: 529 REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI----TQ 584
                RY+KVI+MTDADVDGAHI +LLLT FY+ M  L++  H++   PPL RI      
Sbjct: 612 DLSQSRYDKVIMMTDADVDGAHIRTLLLTLFYRYMRPLVQAGHVYAAVPPLHRIALMGKH 671

Query: 585 GTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRV 643
             + VY + EE   + L +  ++  +   +I R+KGLGEM A QL +T MD   R L R+
Sbjct: 672 KGEYVYTYSEEELARKLSQLDRQEIRYDPDIQRYKGLGEMDADQLADTTMDPRSRMLRRI 731

Query: 644 EINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            +       +   +    LMG +   R +FI + A   D
Sbjct: 732 RLED----AQKASEIFELLMGDEVPPRRQFIIDNADDFD 766



 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 94/246 (38%), Positives = 128/246 (52%), Gaps = 26/246 (10%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            A +  S+ Y+A+S+ +LEGL+ VR RPGMYIG TD + L H   E+IDN++DE +AG  
Sbjct: 2   SAAKKKSEAYNANSLSVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNSVDEALAGAC 61

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I V+L  +G +TV DNGRGIPV+   K    S +E++LT LHAGGKF NS Y   GGL
Sbjct: 62  SHIVVTLHKDGSITVADNGRGIPVDIEQK-TGLSGVEVVLTKLHAGGKFGNSAYTAVGGL 120

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGI-------------------------P 189
           HGVG SVVNALS  L V V R    +  +F +G                          P
Sbjct: 121 HGVGSSVVNALSSRLDVEVDRGGKTYRMEFHQGHPGVYDDPDPQNPSPDSPFARTRKGRP 180

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
                       K GTRI +  DP+IF   A F+  +L+   +  ++L   ++     + 
Sbjct: 181 TELRVVGTYSGKKTGTRIRYWADPEIFNSTARFNYDQLIDRVRQTSFLVPGLRIEVIDEN 240

Query: 250 EIAEKY 255
                Y
Sbjct: 241 ISENTY 246


>gi|183601375|ref|ZP_02962745.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis HN019]
 gi|219683430|ref|YP_002469813.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis AD011]
 gi|241191126|ref|YP_002968520.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196532|ref|YP_002970087.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|183218981|gb|EDT89622.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis HN019]
 gi|219621080|gb|ACL29237.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249518|gb|ACS46458.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240251086|gb|ACS48025.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|289178872|gb|ADC86118.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295794115|gb|ADG33650.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis V9]
          Length = 779

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 138/458 (30%), Positives = 218/458 (47%), Gaps = 38/458 (8%)

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTV 302
             EEF   GG+  ++       ++ +    +G+                  +K      V
Sbjct: 320 RVEEFCHTGGIVDFVDFLSHGEAVSTVWRISGQGTYHEETQAVDANGDLHAQKIVRTCDV 379

Query: 303 EWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDD 361
           + A+ W      +  S+ N + T  GG H  G    +T+ I+K  E    K  +++    
Sbjct: 380 DIAMRWTNGYDTVLKSFVNVVATPGGGMHVDGFLQGITKQIRKTVEDNARKLKVNLKDPK 439

Query: 362 LM-------ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH----YLVQ 410
           +           V +++V I EP+F GQTK  L +   +  V       F          
Sbjct: 440 MKIERDDILAGLVAVVTVRIAEPQFQGQTKDVLGTAPVKPLVTRITDKQFAELITGAKRG 499

Query: 411 NPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
              ++ ++LE ++     R++ RK +E   RK A+    +P KL+DC        ELFIV
Sbjct: 500 YKEQSARVLEKIVGEMHARIQARKTKEVTRRKNALESASMPSKLSDCQPGNDDIAELFIV 559

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           EGDSA G+AK ARN + QA+LP+RGKILNV  A   ++ +N++   ++Q +G  + + + 
Sbjct: 560 EGDSALGTAKAARNSAFQALLPIRGKILNVQKASLSQMLSNKECASIIQVIGAGSGASFD 619

Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI----TQG 585
            E  RY K+++MTDADVDGAHI +LLLT FY+ M  L+E  H++   PPL RI     + 
Sbjct: 620 IESARYNKIVMMTDADVDGAHIRTLLLTLFYRYMRPLVEAGHVYAAVPPLHRIALAGARK 679

Query: 586 TKSVYAHDEEHKQKILEEFKKHGKGK-IEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644
            + +Y + ++     L +          +I R+KGLGEM A+QL +T MD   R L R+ 
Sbjct: 680 GEYIYTYSDDELAGRLAQLDAEHIPYADDIQRYKGLGEMDANQLADTTMDPRTRLLRRIR 739

Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           +       +   D  + LMG +   R +FI + A   D
Sbjct: 740 MED----AEQANDIFSLLMGDEVPPRRQFIVDNAEDFD 773



 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 117/412 (28%), Positives = 174/412 (42%), Gaps = 39/412 (9%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +    +Y A S+ +LEGL+ VR RPGMYIG TD + L H   E+IDN++DE +AG    
Sbjct: 2   AKKEPGSYGAGSLTVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNSVDEALAGACTH 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V+L  +G + V DNGRGIPV+  PK    + +E++LT LHAG KF NS+Y  +GGLHG
Sbjct: 62  IVVTLHEDGSIEVADNGRGIPVDVEPK-TKLTGVEVVLTKLHAGAKFGNSSYNAAGGLHG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPL------------------------SP 192
           VG SVVNALS  + V V R    +   F +G P                         + 
Sbjct: 121 VGSSVVNALSSRMDVEVDRNGHTYHMAFHQGHPGVYTDEDPQRPSPDSPFKKTRKNRPTE 180

Query: 193 LEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
           LE   KV   + GTRI +  DP+IF D A FD  +L+   +  ++L   +K     ++  
Sbjct: 181 LEIIGKVPPKRTGTRIRYWADPEIFNDTAKFDYEQLIDRVRQTSFLVPGLKITVIDERIR 240

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCE 310
                               + +T ++       E    +TE  +   +  +E A A   
Sbjct: 241 ETGDVD-----------TDVFEETDVKQAQSDPVERIEAETEASENPAKIGLERANAEDA 289

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
           +                 + +SG  V   R ++++         +  +S    +S V  +
Sbjct: 290 QEQAQDPQQAVAAIPVVQSADSGASVPGHRRVEEFCHTGGIVDFVDFLSHGEAVSTVWRI 349

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
           S      E   Q       L AQ+ V     D    +           +  V
Sbjct: 350 SGQGTYHE-ETQAVDANGDLHAQKIVRTCDVDIAMRWTNGYDTVLKSFVNVV 400


>gi|66009805|gb|AAY42704.1| GyrB [Burkholderia pyrrocinia]
          Length = 636

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 171/473 (36%), Positives = 252/473 (53%), Gaps = 27/473 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK-----------EKVR 200
           GGLHGVG+S VNALS  L +TV R       +F RGI    + +                
Sbjct: 1   GGLHGVGVSCVNALSSWLRLTVRRGGKKRFMEFHRGIAQDRVLEMVDGVEVSPMLVTGDT 60

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
             RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E       
Sbjct: 61  ENRGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD----- 114

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
             F F GG+K +++   + ++ +   IF    EK G     VE A+ W +     +  + 
Sbjct: 115 --FAFAGGVKGFVEYINKTKTNLHPTIFHANGEKDGV---GVEVAMQWNDSYNENVLCFT 169

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + EP
Sbjct: 170 NNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEP 229

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F+ QTK KLVS + +  VE  +    + +L++ P++A  +   ++E +  R   RK RE
Sbjct: 230 KFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPLDAKIICGKIVEAARARDAARKARE 289

Query: 438 VNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
           + R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+
Sbjct: 290 MTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKV 349

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLL 555
           LNV  A  +K+ +++QI+ LV ALGC         + LRY ++IIMTDADVDGAHI +LL
Sbjct: 350 LNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLL 409

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           LTF Y++M D+IE+ ++++  PPL++I  G    Y  D+      +      G
Sbjct: 410 LTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQG 462


>gi|66009677|gb|AAY42697.1| GyrB [Burkholderia ambifaria]
          Length = 636

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 173/474 (36%), Positives = 256/474 (54%), Gaps = 29/474 (6%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKV 199
           GGLHGVG+S VNALS  L +TV R       +F RG+             +SP+      
Sbjct: 1   GGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQERVLEKVDGVEVSPMLVTGDT 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            N RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E      
Sbjct: 61  EN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD---- 114

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              F F GG+K +++   + ++ +   IF    EK+G     VE A+ W +     +  +
Sbjct: 115 ---FAFAGGVKGFVEYINKTKTNLHPTIFHAIGEKEGV---GVEVAMQWNDSYNENVLCF 168

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + E
Sbjct: 169 TNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPE 228

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F+ QTK KLVS + +  VE  +    + +L++ P++A  +   ++E +  R   RK R
Sbjct: 229 PKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPLDAKIICGKIVEAARARDAARKAR 288

Query: 437 EVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK
Sbjct: 289 EMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGK 348

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASL 554
           +LNV  A  +K+ +++QI+ LV ALGC         + LRY ++IIMTDADVDGAHI +L
Sbjct: 349 VLNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTL 408

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           LLTF Y++M D+IE+ ++++  PPL++I  G    Y  D+      +      G
Sbjct: 409 LLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDTELNAHMLRLALQG 462


>gi|68138705|gb|AAY86003.1| GyrB [Burkholderia cenocepacia]
          Length = 636

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 173/474 (36%), Positives = 256/474 (54%), Gaps = 29/474 (6%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKV 199
           GGLHGVG+S VNALS  L +TV R       +F RG+             +SP+      
Sbjct: 1   GGLHGVGVSCVNALSSWLRLTVRRGGKKRFMEFHRGVAQDRVLEVVDGVEVSPMLVTGDT 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            N RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E      
Sbjct: 61  EN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD---- 114

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              F F GG+K +++   + ++ +   +F    EK G     VE A+ W +     +  +
Sbjct: 115 ---FAFAGGVKGFVEYINKTKTNLHPTVFFATGEKDGV---GVEVAMQWNDSYNENVLCF 168

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + E
Sbjct: 169 TNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPE 228

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F+ QTK KLVS + +  VE  +    + +L++ PI+A  +   ++E +  R   RK R
Sbjct: 229 PKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAR 288

Query: 437 EVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK
Sbjct: 289 EMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGK 348

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASL 554
           +LNV  A  +K+ +++QI+ LV ALGC    +    + LRY ++IIMTDADVDGAHI +L
Sbjct: 349 VLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTL 408

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           LLTF Y++M D+IE+ ++++  PPL++I  G    Y  D+      +      G
Sbjct: 409 LLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQG 462


>gi|23978227|dbj|BAC21110.1| DNA gyrase B subunit [Microcystis wesenbergii]
          Length = 391

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 144/396 (36%), Positives = 213/396 (53%), Gaps = 10/396 (2%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T  + LHHL  EV+DN++DE +AGY   IEV +  +G ++V D+GRGIP + HP    KS
Sbjct: 1   TGPRGLHHLVYEVVDNSIDEALAGYCTHIEVDIKADGSVSVTDDGRGIPTDVHP-TTGKS 59

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
            LE +LT LHAGGKF +  Y++SGGLHGVGISVVNALS  + VTV R + + +Q++ RGI
Sbjct: 60  ALETVLTILHAGGKFGSGGYKVSGGLHGVGISVVNALSAWVDVTVWRDHKVHTQRYERGI 119

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
           P++ L       +K GTR+ F PD +IF     FD + L    +  AYL+  VK  +S  
Sbjct: 120 PVTELVSSPSEGDKTGTRVNFLPDTEIFSQGIEFDYSTLSGRLRELAYLNAGVKITFSDY 179

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +        P  E + + GG+K Y+      +  +  +I     EK G     V +    
Sbjct: 180 R-----PEEPHIEIYCYEGGIKEYVAYMCREKETLHKDIIYVSGEKNGI-NLEVAFQWCI 233

Query: 309 CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISA 366
                 I  + N I T +GG H  GL+  LTR +   A      +    ++  +++    
Sbjct: 234 DAYTDNILGFANNIRTIDGGPHLKGLKAVLTRTLNNVARKRNKIKENEPNLAGENVREGL 293

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             ++SV + EPEF GQTKTKL + + +  V++ + +  + YL QNP  A  ++E  ++  
Sbjct: 294 TAVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGETLNEYLEQNPQVADTIIEKAVQAY 353

Query: 427 E-ERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIA 461
           +     RR +  V RK+ +    LPGKLADCS+   
Sbjct: 354 KAAEAARRARDLVRRKSVLESSPLPGKLADCSERDP 389


>gi|158633805|gb|AAY85999.2| GyrB [Burkholderia cenocepacia]
          Length = 636

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 175/474 (36%), Positives = 256/474 (54%), Gaps = 29/474 (6%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKV 199
           GGLHGVG+S VNALS  L +TV R       +F RG+             +SP+      
Sbjct: 1   GGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVIEVVDGVEVSPMLVTGDT 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            N RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E      
Sbjct: 61  EN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD---- 114

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              F F GG+K +++   + +S +   +F    EK G     VE A+ W +     +  +
Sbjct: 115 ---FAFAGGVKGFVEFINKTKSTLHPTVFFANGEKDGV---GVEVAMQWNDSYNENVLCF 168

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + E
Sbjct: 169 TNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPE 228

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F+ QTK KLVS + +  VE  +    + +L++ PI+A  +   ++E +  R   RK R
Sbjct: 229 PKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAR 288

Query: 437 EVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK
Sbjct: 289 EMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGK 348

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASL 554
           +LNV  A  +K+ +++QI+ LV ALGC    +    E LRY ++IIMTDADVDGAHI +L
Sbjct: 349 VLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLEKLRYHRIIIMTDADVDGAHIRTL 408

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           LLTF Y++M D+IE+ ++++  PPL++I  G    Y  D+      +      G
Sbjct: 409 LLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQG 462


>gi|296313258|gb|ACZ97546.2| DNA gyrase subunit B [Lactobacillus reuteri]
          Length = 364

 Score =  300 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 139/365 (38%), Positives = 210/365 (57%), Gaps = 8/365 (2%)

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
                 + ++      TVE ++ + +     + ++ N I T EGGTHE+G ++ALTR I 
Sbjct: 5   DPPIYVEGKENDI---TVEVSLQYTDSYRSNLLTFTNNIHTYEGGTHETGFKMALTRVIN 61

Query: 344 KYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRD 402
            Y       K   ++  DD+      ++S+   +P+F GQTKTKL + DA+   ++    
Sbjct: 62  DYGHKAGILKNNETLSGDDVREGLTAVVSIKHPDPQFEGQTKTKLGNSDARTATDHVFAA 121

Query: 403 PFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIA 461
            F+ +L+++P EA +++E     S+ R+  ++ RE   +K+ +    LPGKLAD +    
Sbjct: 122 TFNRFLLEHPDEARQIIEKGQLASKARVAAKRAREVTRKKSGLEISNLPGKLADNTSKDP 181

Query: 462 HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
             +ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  +++  N +I  L  ALG
Sbjct: 182 EISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKATLDRVLANDEIRSLFTALG 241

Query: 522 CRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581
                 +      Y K+IIMTDADVDGAHI +LLLT FY+ M  +I   ++++  PPL++
Sbjct: 242 TGFGDDFDITKANYHKLIIMTDADVDGAHIRTLLLTLFYRFMKPMITHGYVYIAQPPLYQ 301

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + QG    Y   +E  ++++   +     K  I R+KGLGEM A QL ET MD   R LL
Sbjct: 302 VRQGKFVKYIDSDEELEQVVSSLQPS--PKPVIQRYKGLGEMDAEQLWETTMDPENRHLL 359

Query: 642 RVEIN 646
           RV+++
Sbjct: 360 RVKLD 364


>gi|297850918|ref|XP_002893340.1| hypothetical protein ARALYDRAFT_313269 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339182|gb|EFH69599.1| hypothetical protein ARALYDRAFT_313269 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 951

 Score =  300 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 126/671 (18%), Positives = 232/671 (34%), Gaps = 88/671 (13%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGG---------------------TDEKALHHLFSEVI 82
           Y   S+      E + +RP  YIG                      T    L  +F E++
Sbjct: 2   YQEKSL-----HEHILLRPDAYIGSIKEHTQPLWVFEKGEMVYRRTTYVPGLCKIFEEIL 56

Query: 83  DNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140
            NA+D        + I V +D +   ++V +NG G+PV    +  N    E++   L   
Sbjct: 57  MNAVDNKRTDPSMDSIIVKIDVDQNTISVRNNGNGVPVAQLEE-KNVYIPELVFGCLLTS 115

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK-FSRGIPLSPLEKKEKV 199
             FD++    +GG  G G  + N  S    +          +  F+R +           
Sbjct: 116 SHFDDN---TTGGRTGYGAKLTNIFSTRFTIETNLNRYEHEKIVFTRNMKEKSTPVVTTC 172

Query: 200 RN-KRGTRITFRPDPKIFG--DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
            +  + T +TF PD ++F          A + K     A   G        D  +     
Sbjct: 173 ESIDKWTEVTFEPDLEMFHISKIGKDTVALMEKRIVECAACLGETVKVTINDTLLEVNSF 232

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT 316
               + +      +     ++  +                      E  ++  ++  +  
Sbjct: 233 NDYVDLYLGANSSRNDPLPRMTVK-----------------VNDKWEICVSLSKDKFQQI 275

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIRE 376
           S+ N+I T +GG H   +   +   I     + +      + +D++       ++  I  
Sbjct: 276 SFVNSIATTKGGPHVDYVTTQIIDFITN--SVKKKMNYAKVETDNVKKHMWVFVNCVIDH 333

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P F    K  L+  ++    +  L         +NP    +LL W   +  + L    ++
Sbjct: 334 PVFDW-LKETLIFPESSFGSKCKLSKDILKK-DENPGMVKQLLSWATSKHGKDLDLGIEK 391

Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ------ARNRSNQAVL 490
            V+   A                 +    L + EGDSA              +R    V 
Sbjct: 392 LVDANKAGG-------------EDSKLCTLILTEGDSAKTLVMTGLSFLSDESRELYGVF 438

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           PL+GK++NV  A  +KI  N++I  L   LG     +    +LRY  V+IMTD D DG H
Sbjct: 439 PLQGKLMNVRGASEDKINKNKKIQQLKTILGLENGKE--YGNLRYGHVMIMTDQDHDGFH 496

Query: 551 IASLLLTFFYQEMYDLIEQK--HLFLISPPLFRITQ--GTKSVYAHDEEHKQKILEEFKK 606
           I  L++  F+    +L+E+    L     P+ + T   G K  +       +K       
Sbjct: 497 IKGLIINLFHVMWPELLERDPSFLCEFVTPIVKATHEDGKKETFF-SMPELKKWKNNLLP 555

Query: 607 HGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK 666
           +   +     +KGLG     + +    + +     R  + ++ +  K    + N     K
Sbjct: 556 NDIPRWTYKTYKGLGTSSDEEAQTYFENISIH--KRDFLWQNEDDGKAIDLAFN---SDK 610

Query: 667 ADERFKFIQER 677
            ++R  +++  
Sbjct: 611 PEDRRTWLKNY 621


>gi|66009669|gb|AAY42696.1| GyrB [Burkholderia ambifaria]
          Length = 635

 Score =  300 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 169/472 (35%), Positives = 252/472 (53%), Gaps = 27/472 (5%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK-----------EKVRN 201
           GLHGVG+S VNALS  L +TV R       +F RG+    + ++                
Sbjct: 1   GLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQERVLEQVDGVEVSPMLVTGDTE 60

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
            RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E        
Sbjct: 61  NRGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD------ 113

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F F GG+K +++   + ++ +   IF    EK G     VE A+ W +     +  + N
Sbjct: 114 -FAFAGGVKGFVEYINKTKTNLHPTIFHANGEKDGV---GVEVAMQWNDSYNENVLCFTN 169

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + EP+
Sbjct: 170 NIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPK 229

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
           F+ QTK KLVS + +  VE  +    + +L++ P++A  +   ++E +  R   RK RE+
Sbjct: 230 FSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPLDAKIICGKIVEAARARDAARKAREM 289

Query: 439 NRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
            R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+L
Sbjct: 290 TRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVL 349

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLL 556
           NV  A  +K+ +++QI+ LV ALGC         + LRY ++IIMTDADVDGAHI +LLL
Sbjct: 350 NVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLL 409

Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           TF Y++M D+IE+ ++++  PPL++I  G    Y  D+      +      G
Sbjct: 410 TFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDTELNAHMLRLALQG 461


>gi|310287736|ref|YP_003938994.1| DNA gyrase subunit B [Bifidobacterium bifidum S17]
 gi|309251672|gb|ADO53420.1| DNA gyrase subunit B [Bifidobacterium bifidum S17]
          Length = 770

 Score =  300 bits (768), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 144/463 (31%), Positives = 219/463 (47%), Gaps = 38/463 (8%)

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGT 297
           ++     EEF   GG+K ++       ++      TG+                  +K T
Sbjct: 306 RHTHARVEEFRHTGGVKDFVDFLSAGEAVSDIWRITGEDTYEEETQAVGEGGELHAQKVT 365

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
            +  V+ A+ W       + S+ N + T  GG H  G  + LT+ I+K  E    K  ++
Sbjct: 366 RKCGVDIAMRWTNGYDTTMRSFVNVVETPGGGMHVDGFLMGLTKQIRKAVEDNARKLKVN 425

Query: 357 IISDDLM-------ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
           +   ++           V +++V I EP+F GQTK  L +   +  V       F   + 
Sbjct: 426 LKDSNMRVERDDILAGLVAVVTVRIAEPQFQGQTKDVLGTAPVKPIVTRMTDKQFGEMIT 485

Query: 410 QNPIEATKL----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +     +     LE ++     R++ RK +E   RK A+    +P KL+DC        
Sbjct: 486 GSKRGYKEQSGRVLEKIVGEMHARIQARKTKEVTRRKNALESAAMPSKLSDCQPGNDDVA 545

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           ELFIVEGDSA G+AK ARN   QA+LP+RGKILNV  A   ++ NN++   ++Q +G  +
Sbjct: 546 ELFIVEGDSALGTAKAARNSGFQALLPIRGKILNVQKASLSQMLNNKECAAIIQVVGAGS 605

Query: 525 RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-- 582
            + +  E  RY KVI+MTDADVDGAHI  LLLT FY+ M  LIE  +++   PPL RI  
Sbjct: 606 GAGFDIEQSRYHKVIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGYVYAAVPPLHRIAL 665

Query: 583 --TQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRT 639
             +   + +Y + ++     L + ++       +I R+KGLGEM A QL +T MD   R 
Sbjct: 666 AGSHKGEFIYTYSDDELAGRLADLERRHISCNPDIQRYKGLGEMDADQLADTTMDPRTRM 725

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           L R+ +           +  + LMG     R  FI + A   D
Sbjct: 726 LRRIRMED----AAQASEIFSLLMGDDVPPRKAFIVDNADDFD 764



 Score =  257 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 93/234 (39%), Positives = 124/234 (52%), Gaps = 26/234 (11%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
               Y A S+ +LEGL+ VR RPGMYIG TD + L H   E+IDNA+DE +AG  + I V
Sbjct: 2   PKQEYGADSLTVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNAVDEALAGACDHITV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G + V DNGRGIPV+  PK    + +E++LT LHAG KF N++Y  +GGLHGVG 
Sbjct: 62  TLHDDGSVEVADNGRGIPVDVEPK-TKLTGVEVVLTKLHAGAKFGNASYNAAGGLHGVGS 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPL------------------------SPLEK 195
           SVVNALS  L V V R        F +G P                         + LE 
Sbjct: 121 SVVNALSSRLDVEVDRDGKTHHMAFHQGHPGVYSDTDPEHPSPDAPFKRTRKNRPTELEI 180

Query: 196 KEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
             KV     GTRI +  DP+IF D A F   +L+   +  ++L   ++     +
Sbjct: 181 IGKVSPKTTGTRIRYWADPEIFNDTAEFSYEQLIDRVRQTSFLVPGLRITVIDE 234


>gi|294668237|ref|ZP_06733344.1| DNA topoisomerase IV, B subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309945|gb|EFE51188.1| DNA topoisomerase IV, B subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 429

 Score =  300 bits (768), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 149/419 (35%), Positives = 218/419 (52%), Gaps = 20/419 (4%)

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTR 340
                  +       +      +A+ W EE      SY N I T  GGTHE+GL+ A+  
Sbjct: 15  FSCENYISDDHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLGGTHEAGLKQAVFN 74

Query: 341 GIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
            +  +  L     R + + SDD+      +LS  + +P+F GQTK KL + DA + V   
Sbjct: 75  AVNNFINLHNLLPRGVKVQSDDVFSKTAFVLSARVLDPQFQGQTKDKLTNRDALKLVAAV 134

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
             DP + +L QN     K+ E  I +++ R+R    +++ +K       LPGKL DC   
Sbjct: 135 SGDPLELWLNQNVDFGKKIAELAIRQAQARMRSV--KKIEKKKGSGVAVLPGKLTDCESE 192

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
                ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN      +++  N +I D+  A
Sbjct: 193 DIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQLFGNAEIHDISVA 252

Query: 520 LGCRTRSQYREEDL---RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           +G          DL   RY K+ I++DADVDG+HI  LLLT FY+    L+   H+++  
Sbjct: 253 IGVDPHGINDNPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHFPKLVADGHIYVAQ 312

Query: 577 PPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEISRFKGLGEMLASQ 627
           PPLFR+    QG     +  YA D+     ILE  +K G  +    ISRFKGLGEM   Q
Sbjct: 313 PPLFRVDVNAQGKSKPARKFYALDQNELDSILERLQKEGVKETAYSISRFKGLGEMNPDQ 372

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQERASFIDDVG 685
           LK+T M  + R LL+V+I +  +   +T+D   KLMG  +A  R  +++      + + 
Sbjct: 373 LKDTTMHPDTRRLLQVQIPEGADD--ETRDIFVKLMGKGEAAARRAWMEREGDTAE-LD 428


>gi|327197937|ref|YP_004306254.1| putative DNA gyrase subunit B-topoisomerase [Lactococcus phage 949]
 gi|306009257|gb|ADM73652.1| putative DNA gyrase subunit B-topoisomerase [Lactococcus phage 949]
          Length = 655

 Score =  300 bits (768), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 174/651 (26%), Positives = 276/651 (42%), Gaps = 32/651 (4%)

Query: 47  SSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN-LIEVSLDGNG 105
             IR L   +  R +  ++ G  D     H   E++ NA DE+I  +    I V L  +G
Sbjct: 7   EKIRKLSNRDQAREKIAVWYGSADNY--QHGLKELLANATDEIINNFEEGTITVKLSEDG 64

Query: 106 F-LTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST--YEISGGLHGVGISVV 162
             +TV D GRGIP     +       E++  TL AG K+ +S        G +GVG +V+
Sbjct: 65  STVTVTDTGRGIP--ISGETDGIPNYELLFLTLFAGTKYGDSGVTNGTYTGSNGVGTTVL 122

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           N  S    VT   +   +  KF+ G  ++    +EK  +  GT +TF  DP ++     F
Sbjct: 123 NYTSVLFEVTSIIKGVKYHIKFTNGGEVTEDLTEEKTSDIDGTTVTFSLDPTVYTKTI-F 181

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               + ++    A  S ++   +   +     +    KE +               +   
Sbjct: 182 KDEDVREIAHRYAVSSNKITVDYIHGETELTYHYTDLKEYYSELTSAVNTSGIVFGDLVE 241

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIA-WCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
               I + + +   +H      +IA      P   SY N      GG    G+   +   
Sbjct: 242 YQDTITSNQHDVFTSHEELTSLSIALSTSTTPTQESYLNLNYLPNGGKINEGIINGIKLY 301

Query: 342 IKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + KY        K+  S    D+  S   +  +F    EFA QTK        +   +  
Sbjct: 302 VNKYCRANNLFPKKVNSFSDSDITESFSFVAVMFSNNVEFANQTKFSTNKELYKEVAKRR 361

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC--- 456
           +    +   +++P     ++  ++   +E     K +E  +K    K+       D    
Sbjct: 362 VTQILEVTEIEDPKNFKDIINHLLLVQKENTVNAKHKEKLKKKLTEKVDTMSNRIDKLVD 421

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG-SEKIRNNQQIMD 515
           S+      EL++ EGDSA GS   AR+   QA +P+ GK LNV  A   E I NN+ IM+
Sbjct: 422 SRVHGEEAELYLAEGDSAHGSVVSARDSKFQASMPMGGKFLNVEKAMNIEDIVNNETIMN 481

Query: 516 LVQALGCRTR--------SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
           +++ALGC            ++    LRY K+I  +D D DGA I  L++T FY+ M ++I
Sbjct: 482 VIKALGCGIDLGKKQKDLPKFDITKLRYGKIICASDEDPDGAQIQCLIITLFYKLMPEII 541

Query: 568 EQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
               L+L   PLF I  +    +YA+ +E + +IL+E    G   ++ +R KGLGE+ A 
Sbjct: 542 HTGRLYLAQTPLFEIKLKDDSVLYAYTDEGRDEILKE---QGSKVVQYTRAKGLGELDAH 598

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
            + ETAM+   R L RV I +     K  + +I   MGT  D R  FI   
Sbjct: 599 IMAETAMNPETRHLTRVTIEE----AKHAEQAIVDWMGTNVDNRKLFISRN 645


>gi|167077357|gb|ABZ10900.1| DNA gyrase subunit B [Burkholderia cepacia]
          Length = 640

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 173/476 (36%), Positives = 256/476 (53%), Gaps = 29/476 (6%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKE 197
           +  GLHGVG+S VNALS  L +TV R       +F RG+             +SP+    
Sbjct: 3   VRVGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLEVVDGVEVSPMLVTG 62

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
              N RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E    
Sbjct: 63  DTEN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD-- 118

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
                F F GG+K +++   + ++ +   +F    EK G     VE A+ W +     + 
Sbjct: 119 -----FAFAGGVKGFVEFINKTKTNLHPTVFFANGEKDGV---GVEVAMQWNDSYNENVL 170

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
            + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV +
Sbjct: 171 CFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKV 230

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP+F+ QTK KLVS + +  VE  +    + +L++ PI+A  +   ++E +  R   RK
Sbjct: 231 PEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARK 290

Query: 435 QREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            RE+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLR
Sbjct: 291 AREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLR 350

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIA 552
           GK+LNV  A  +K+ +++QI+ LV ALGC    +    E LRY ++IIMTDADVDGAHI 
Sbjct: 351 GKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLEKLRYHRIIIMTDADVDGAHIR 410

Query: 553 SLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +LLLTF Y++M D+IE+ ++++  PPL++I  G    Y  D+      +      G
Sbjct: 411 TLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQG 466


>gi|83954052|ref|ZP_00962772.1| DNA topoisomerase IV, B subunit [Sulfitobacter sp. NAS-14.1]
 gi|83841089|gb|EAP80259.1| DNA topoisomerase IV, B subunit [Sulfitobacter sp. NAS-14.1]
          Length = 314

 Score =  300 bits (767), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 173/316 (54%), Positives = 232/316 (73%), Gaps = 3/316 (0%)

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           +S FIREPEF GQTK +L ++DAQR VENA+RD FD++L  +   A  +L++++ R+EER
Sbjct: 1   MSCFIREPEFVGQTKDRLATVDAQRMVENAVRDHFDNWLAADTKSAGAILDFLVLRAEER 60

Query: 430 LRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
           LRRR+++E  RKTA +KLRLPGKL DC+     GTELFIVEGDSAGGS K ARNR+ QA+
Sbjct: 61  LRRRQEKETARKTATKKLRLPGKLTDCTSKTREGTELFIVEGDSAGGSGKGARNRNTQAL 120

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549
           LPL+GKILNV  A S K+  N +I DL +ALG    +++  +DLRY+K+IIMTDADVDGA
Sbjct: 121 LPLKGKILNVLGAASSKLNTNAEINDLCEALGVGMGTKFNLDDLRYDKIIIMTDADVDGA 180

Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK 609
           HIA+LL+TFFY +M  +I+  HL+L  PPL+R+TQG K VY  D+  K   LE+    GK
Sbjct: 181 HIAALLMTFFYTQMRPMIDAGHLYLACPPLYRLTQGAKRVYVADDAEKDMWLEK-GLGGK 239

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669
           GKI++ RFKGLGEM A  LKET MD   R L+RV +++D+    +T D + +LMG K + 
Sbjct: 240 GKIDLQRFKGLGEMDAKDLKETTMDPTTRKLIRVTVDEDM--PGETGDLVERLMGKKPEL 297

Query: 670 RFKFIQERASFIDDVG 685
           R+++IQE A F++++ 
Sbjct: 298 RYQYIQENAQFVEELD 313


>gi|32453488|ref|NP_861694.1| DNA topoisomerase II large subunit [Enterobacteria phage RB69]
 gi|32350307|gb|AAP75906.1| gp60plus39 large subunit topoisomerase II [Enterobacteria phage
           RB69]
          Length = 606

 Score =  300 bits (767), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 117/609 (19%), Positives = 208/609 (34%), Gaps = 58/609 (9%)

Query: 73  ALHHLFSEVIDNAMDEVIA---GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN--K 127
            L  L  E+IDN++DE I     +AN I+V +  N  ++V DNGRGIP            
Sbjct: 48  GLVKLIDEIIDNSVDEAIRTSFKFANKIDVQI-KNNQVSVEDNGRGIPQGLVTDQTGEQI 106

Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187
                  T   AGG F + +   +GG++GVG S+ N  S       +      +   S G
Sbjct: 107 PGPVAAWTIPKAGGNFGDDSERKTGGMNGVGSSLTNIFSTLFTGITSDGENEITVNCSNG 166

Query: 188 IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247
           +       K+          T         + +       L   Q+ A +   +K  ++ 
Sbjct: 167 MENKSWSSKKSKGKGTKVIFTPDFTSFEEHNLSQIYLDITLDRLQTLAVVYPDIKFTFNG 226

Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307
            K           + F    G    +Q                           V  A  
Sbjct: 227 KK------VDGNFKRFAKQFGEDNIIQE-----------------------NDKVSIAFT 257

Query: 308 WCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAV 367
              +     +Y N I T  GG H   +   +   +     + +  + I +    +     
Sbjct: 258 TSPDGFRHLTYVNNIHTKNGGHHVECVMDDICEHL--LPGIKKKYKGIEVTKARVKECLT 315

Query: 368 GILSVF-IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
            ++ +  +    F  QTK +L S                  + Q  ++   L+  ++E +
Sbjct: 316 MLMFIRDMSNMRFDSQTKERLTSTYGDIR---NHIQLDAKKIAQALLKNEALIMPIVEAA 372

Query: 427 EERLRRRKQREVNRKTAIRKLRLPG-KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
             R    ++    +             +          T LF+ EGDSA G     R+R 
Sbjct: 373 LARKLAAEKAAETKAAKKATKAKVHKHIKANQCGKDADTTLFLTEGDSAIGYLIDVRDRE 432

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545
                PLRGK++N        +  N+++ D+    G     +   E+  Y  + IMTDAD
Sbjct: 433 LHGGFPLRGKVMNSWGMSYADMMKNKELFDICAITGLILGEKA--ENTNYRNIAIMTDAD 490

Query: 546 VDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605
            DG       L  F+    +L EQ  +  +  P+     G    + +     ++  +   
Sbjct: 491 HDGLGSIYPALLAFFSNWPELFEQGRIRFVKTPVIIAQIGKTQKWFYTVAEYEEAKDTLP 550

Query: 606 KHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT 665
           KH      I   KGLG +  S+          R +++  +   +   ++ ++    LMG 
Sbjct: 551 KH-----SIRYIKGLGSLEKSEY---------RKMIQNPVYDVVKLPENWKELFEMLMGD 596

Query: 666 KADERFKFI 674
            ++ R +++
Sbjct: 597 DSELRKEWM 605


>gi|260495355|ref|ZP_05815482.1| DNA gyrase subunit B [Fusobacterium sp. 3_1_33]
 gi|260197133|gb|EEW94653.1| DNA gyrase subunit B [Fusobacterium sp. 3_1_33]
          Length = 244

 Score =  300 bits (767), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 110/246 (44%), Positives = 157/246 (63%), Gaps = 5/246 (2%)

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK+ +    LPGKLADC+   A   E+FIVEGDSAGGSAKQ R+R NQA+LPLRGKI+NV
Sbjct: 3   RKSVLEVGSLPGKLADCTSKKAEECEIFIVEGDSAGGSAKQGRDRYNQAILPLRGKIINV 62

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
             AG  K   + +I  +V A G      +    LRY K+I+MTDADVDGAHI +L+LTF 
Sbjct: 63  EKAGLHKSLESSEIRAMVTAFGTSIGETFDISKLRYGKIILMTDADVDGAHIRTLILTFL 122

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
           Y+ M DLI   ++++  PPL+++  G + +YA+++   + IL +  +  K K  I R+KG
Sbjct: 123 YRHMIDLIYGGNVYIACPPLYKVAAGKQIIYAYNDLELKNILGQMNQENK-KYTIQRYKG 181

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679
           LGEM   QL ET M+ + R LL+V I+    + ++     +KLMG K + R +FI+E A 
Sbjct: 182 LGEMNPEQLWETTMNPDGRLLLKVSID----NAREADMLFDKLMGDKVEPRREFIEEHAE 237

Query: 680 FIDDVG 685
           ++ ++ 
Sbjct: 238 YVKNID 243


>gi|155122232|gb|ABT14100.1| hypothetical protein MT325_M546R [Paramecium bursaria chlorella
           virus MT325]
          Length = 1058

 Score =  300 bits (767), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 138/674 (20%), Positives = 241/674 (35%), Gaps = 90/674 (13%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTD---------------------EKALHHLFSEVIDN 84
           AS    L   E V  RP  Y+G  +                       A   +F E++ N
Sbjct: 2   ASKYIKLSQREHVLARPDTYVGSVEKELRNDFVYDGAKITKKDVLYSPAFLKIFDEILVN 61

Query: 85  AMDEVIAG-YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143
           + D    G   + ++V++  +  ++V ++G  IP+E +         E+I   L +G  F
Sbjct: 62  SADCFNRGGAMSTLKVAISKD-SISVYNDGCSIPLEKND--EGVYIPEMIFGHLLSGENF 118

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D++      G +G G  + N  S    V +   +  + Q +S  +      K  K     
Sbjct: 119 DDTEERTGAGRNGYGSKLTNIFSKTFVVEIYDGSHKYVQSWSDNMISVSKAKITKSSKVP 178

Query: 204 GTRITFRPDPKIFGD--KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
               +F PD   FG         + L++     A + G V+      +   +    P   
Sbjct: 179 SITTSFVPDLARFGMADIDDDTRSILVRRVYDMAAVLGSVRVFLDGKRLDVK---TPLDY 235

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
              +                            +K        W+I     N         
Sbjct: 236 FKLYTN--------------------------EKVVFESADGWSIGVAPANEFACVSFVN 269

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
                GGTH   +  ++ + + + A     K+   +    +       ++  +  P F+ 
Sbjct: 270 ASAARGGTHVDTVVNSIAKAVVEAAS----KKKTIVKPAMVKNKLFVFVNAKVVNPTFSS 325

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK  L S + + +   A                  +L+ VI  +  R      R + + 
Sbjct: 326 QTKDILTSRNIKFSPSAAFLKKA----------TGLVLDAVIAETNVRESLVDARLLKKT 375

Query: 442 TAIRKLR--LPGKLADCSQNIAHG---TELFIVEGDSAGGSAKQARN---RSNQAVLPLR 493
             ++K R     KL D +           L + EGDSA   A        R    + PLR
Sbjct: 376 DGVKKTRLTGIKKLTDAAWAGTKNSGLCTLILTEGDSAATLATAGLAVVGRERYGIFPLR 435

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIA 552
           GK+LNV  A    I  N +I  + Q LG +    Y++   LRY  V++MTDADVDG+HI+
Sbjct: 436 GKLLNVRDASVSSIAANAEIAAIKQILGLQVGKTYKDASSLRYGSVMLMTDADVDGSHIS 495

Query: 553 SLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK 611
           +L++ FF+ +   L+     L   S P+   ++G      +     +   +        K
Sbjct: 496 ALVMNFFHAQFPSLLAVPGFLKKFSTPIVVASRGKDIKEFYSLPDYESWKQNTADC--AK 553

Query: 612 IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERF 671
             I  FKGLG   +   K+   +     L+++      +S +    S NK   ++ DER 
Sbjct: 554 WSIKYFKGLGTSTSEDAKKYFKNLKS--LVKI-FGWTEDSGELIDRSFNK---SRPDERK 607

Query: 672 KFIQ--ERASFIDD 683
            ++   +  + +D 
Sbjct: 608 TWLLDFQPGNQLDQ 621


>gi|48425515|pdb|1S16|A Chain A, Crystal Structure Of E. Coli Topoisomerase Iv Pare 43kda
           Subunit Complexed With Adpnp
 gi|48425516|pdb|1S16|B Chain B, Crystal Structure Of E. Coli Topoisomerase Iv Pare 43kda
           Subunit Complexed With Adpnp
          Length = 390

 Score =  299 bits (766), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 143/404 (35%), Positives = 212/404 (52%), Gaps = 19/404 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R   +++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL  + ++KA L   V+  +  +    E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G           V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
              ++D F  +L QN   A  L E  I  ++ R+R  K+    +
Sbjct: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKK 390


>gi|311993287|ref|YP_004010152.1| gp60plus39 DNA topoisomerase subunit [Acinetobacter phage Acj9]
 gi|295917244|gb|ADG59915.1| gp60plus39 DNA topoisomerase subunit [Acinetobacter phage Acj9]
          Length = 608

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 143/653 (21%), Positives = 235/653 (35%), Gaps = 81/653 (12%)

Query: 49  IRILEGLEPVRMRPGMYIGGTD-----------------EKALHHLFSEVIDNAMDEVIA 91
           I++L   + V  RPGMY+G T                     L  +  E+IDN++DE I 
Sbjct: 8   IKMLSDRDHVLKRPGMYVGSTSNEDHERFLFGKYQKVKYVPGLVKIIDEIIDNSLDEAIR 67

Query: 92  G---YANLIEVSLDGNGFLTVVDNGRGIPVEN--HPKFPNKSTLEIILTTLHAGGKFDNS 146
               +AN IE+ +DG   + V DNGRGIP      P+           T   AGG F N 
Sbjct: 68  TNFEFANKIELKIDG-NAVFVSDNGRGIPQGLITTPEGTQLPGPVACWTRTKAGGNFGND 126

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
               + G++GVG S+ N  S E   T        +   +  +     +   K   ++GT 
Sbjct: 127 ADRKTAGMNGVGSSLTNIFSQEFTGTTCDGENTITVHCTGNMENVDWKS--KKGGRQGTS 184

Query: 207 ITFRPDPKIFGDKAGFD--AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           ++F PD  +   K         +    Q  A +   +   +   +               
Sbjct: 185 VSFTPDFDLLDCKEIDQTIIDIVEDRLQILAVIYPAIAFKFQGVRV-------------- 230

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILT 324
             G  K Y +   EN  ++ ++               ++ +I   E+     S+ N I T
Sbjct: 231 -QGNFKKYAKMYDENAIIMETD--------------NIQLSIGRSEDGFRHLSFVNAIHT 275

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSV-FIREPEFAGQT 383
             GG+H   L   L+    +   + + K  + +    +      +L +  +    F  QT
Sbjct: 276 KVGGSHIDYLMEELS---NELMPMIKRKHKVEVNKARIKECLTVLLFIKDMPNMRFDSQT 332

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443
           K +L S   +     A  D     L +  I    +L  +IE    +L   ++    +   
Sbjct: 333 KERLTSPWGEV---KAHMDIDVKKLARMFINNDDVLMPIIEAVLAKLLAAEKAANTKAAK 389

Query: 444 IRKLRLPGKLADCSQNIAHGTE--LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
                   K    +       E  LF+ EGDSA G     R+R  Q   PLRGK++N   
Sbjct: 390 KAAKAKVAKHIKPNLYGREDVETTLFLTEGDSAIGYLLTTRDRELQGGYPLRGKVMNTWG 449

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
               ++  N++I D+    G     +   E L Y+ + IM DAD DG       L  F+ 
Sbjct: 450 MQPNEMLKNKEIFDICAITGLTIGEKA--EGLNYKNIAIMVDADPDGLGSIYPSLLAFFS 507

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
              +L +Q  + L   P+    +G    + +D    +      K        I   KGLG
Sbjct: 508 NWPELFDQGRIRLCKSPIIIAEKGKDEKWYYDLAAYEAEKPLLK-----GYTIRYIKGLG 562

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
            +      +   D              ++  ++ +D    LMG  A  R  ++
Sbjct: 563 SLTEDNYAKVINDPQ---------FDVVSLPENWRDQFEMLMGNDAQLRKDWM 606


>gi|224283383|ref|ZP_03646705.1| DNA gyrase subunit B [Bifidobacterium bifidum NCIMB 41171]
 gi|311064623|ref|YP_003971348.1| DNA gyrase subunit B [Bifidobacterium bifidum PRL2010]
 gi|313140537|ref|ZP_07802730.1| DNA gyrase subunit B [Bifidobacterium bifidum NCIMB 41171]
 gi|310866942|gb|ADP36311.1| GyrB DNA gyrase subunit B [Bifidobacterium bifidum PRL2010]
 gi|313133047|gb|EFR50664.1| DNA gyrase subunit B [Bifidobacterium bifidum NCIMB 41171]
          Length = 770

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 145/463 (31%), Positives = 220/463 (47%), Gaps = 38/463 (8%)

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGT 297
           ++     EEF   GG+K ++       ++      TG+                  +K T
Sbjct: 306 RHTHARVEEFRHTGGVKDFVDFLSAGEAVSDIWRITGEDTYEEETQAVGEGGELHAQKVT 365

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
            +  V+ A+ W       + S+ N + T  GG H  G  + LT+ I+K  E    K  ++
Sbjct: 366 RKCGVDIAMRWTNGYDTTMRSFVNVVETPGGGMHVDGFLMGLTKQIRKAVEDNARKLKVN 425

Query: 357 IISDDLM-------ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
           +   ++           V +++V I EP+F GQTK  L +   +  V       F   + 
Sbjct: 426 LKDSNMRVERDDILAGLVAVVTVRIAEPQFQGQTKDVLGTAPVKPIVTRMTDKQFGEMIT 485

Query: 410 QNPIEATKL----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +     +     LE ++     R++ RK +E   RK A+    +P KL+DC        
Sbjct: 486 GSKRGYKEQSGRVLEKIVGEMHARIQARKTKEVTRRKNALESAAMPSKLSDCQPGNDDVA 545

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           ELFIVEGDSA G+AK ARN   QA+LP+RGKILNV  A   ++ NN++   ++Q +G  +
Sbjct: 546 ELFIVEGDSALGTAKAARNSGFQALLPIRGKILNVQKASLSQMLNNKECAAIIQVVGAGS 605

Query: 525 RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-- 582
            + +  E  RY KVI+MTDADVDGAHI  LLLT FY+ M  LIE  +++   PPL RI  
Sbjct: 606 GAGFDIEQSRYHKVIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGYVYAAVPPLHRIAL 665

Query: 583 --TQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
             +   + +Y + ++     L +  ++H     +I R+KGLGEM A QL +T MD   R 
Sbjct: 666 AGSHKGEFIYTYSDDELAGRLADLERRHISYNPDIQRYKGLGEMDADQLADTTMDPRTRM 725

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           L R+ +           +  + LMG     R  FI + A   D
Sbjct: 726 LRRIRMED----AAQASEIFSLLMGDDVPPRKAFIVDNADDFD 764



 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 93/234 (39%), Positives = 124/234 (52%), Gaps = 26/234 (11%)

Query: 40  ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
               Y A S+ +LEGL+ VR RPGMYIG TD + L H   E+IDNA+DE +AG  + I V
Sbjct: 2   PKQEYGADSLTVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNAVDEALAGACDHITV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G + V DNGRGIPV+  PK    + +E++LT LHAG KF N++Y  +GGLHGVG 
Sbjct: 62  TLHDDGSVEVADNGRGIPVDVEPK-TKLTGVEVVLTKLHAGAKFGNASYNAAGGLHGVGS 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPL------------------------SPLEK 195
           SVVNALS  L V V R        F +G P                         + LE 
Sbjct: 121 SVVNALSSRLDVEVDRDGKTHHMAFHQGHPGVYSDTDPEHPSPDAPFKRTRKNRPTELEI 180

Query: 196 KEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
             KV     GTRI +  DP+IF D A F   +L+   +  ++L   ++     +
Sbjct: 181 IGKVSPKTTGTRIRYWADPEIFNDTAEFSYEQLIDRVRQTSFLVPGLRITVIDE 234


>gi|213855672|ref|ZP_03383912.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 432

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 149/435 (34%), Positives = 225/435 (51%), Gaps = 20/435 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + VTV R   +++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVTVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ESFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  +RL+ + ++KA L   V+  +  +   +E       + + +  GL  YL   +  
Sbjct: 177 PRFSVSRLMHVLKAKAVLCPGVEITFKDEVNNSE-------QRWCYQDGLNDYLGEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G    +      V+WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 LPTLPEKPFIGNFNGETE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V
Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              ++D F  +L QN   A +L E  I  ++ RLR   ++    K +    R  G     
Sbjct: 347 SGVVKDAFSLWLNQNVQAAEQLAEMAIASAQRRLR-ADKKSGTTKNSPAVRRCRGNWRTV 405

Query: 457 SQNIAHGTELFIVEG 471
            + I       + +G
Sbjct: 406 PRRILIEPSCSLWKG 420


>gi|218673349|ref|ZP_03523018.1| DNA gyrase subunit B [Rhizobium etli GR56]
          Length = 362

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 111/312 (35%), Positives = 171/312 (54%), Gaps = 12/312 (3%)

Query: 22  KLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSE 80
             +++ +     +      S  Y A SI++L+GL+ VR RPGMYIG TD+   LHH+  E
Sbjct: 15  DNRENLDRMSDTSATENGVSTEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYE 74

Query: 81  VIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140
           V+DNA+DE +AG+A+++ VSL+ +G +TV DNGRGIP + H      S  E+I+T LHAG
Sbjct: 75  VVDNAIDEALAGHADIVTVSLNPDGSVTVTDNGRGIPTDIH-TGEGVSAAEVIMTQLHAG 133

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD ++Y++SGGLHGVG+SVVNALS  L + + R   I    F+ G+  +PL+   +  
Sbjct: 134 GKFDQNSYKVSGGLHGVGVSVVNALSVWLKLKIRRHGKIHEMSFTHGVADAPLKVTGEAP 193

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
           ++ GT ++F P  + F     FD   L    +  A+L+  V+   +  +    K     +
Sbjct: 194 DETGTEVSFMPSSETF-TMTEFDYGTLEHRLRELAFLNSGVRILLTDKRHSDIK-----Q 247

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYC 319
           EE  + GGL+ ++      +  +  +    + EK G    TVE A+ W +   E    + 
Sbjct: 248 EELRYDGGLEAFVAYLDRAKKPLVDKPVAIRGEKDGI---TVEVAMWWNDSYHENVLCFT 304

Query: 320 NTILTDEGGTHE 331
           N I   +GG   
Sbjct: 305 NNIPQRDGGHPY 316


>gi|58761297|gb|AAW82363.1| DNA gyrase subunit B [Dehalococcoides sp. VS]
          Length = 443

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 170/455 (37%), Positives = 259/455 (56%), Gaps = 17/455 (3%)

Query: 84  NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143
           N++DE +AG  + I+V +  +G ++V DNGRGIP++ HP     S LE ++T LHAG KF
Sbjct: 2   NSVDEAMAGVCDRIKVIIYKDGSVSVEDNGRGIPIDIHP-VTKISALETVMTVLHAGAKF 60

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
              TY++SGGLHGVG SVVNAL++   V V R   I+ Q + RG P +PLE+   V +  
Sbjct: 61  GGKTYQVSGGLHGVGASVVNALAEWTTVKVRRNGKIYQQSYQRGKPSTPLEEVG-VSDGS 119

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT   F+ D +IF     +D   L    +  AYL+  ++     ++   E+        +
Sbjct: 120 GTTTIFKADSQIFST-TEYDFETLTDRLREIAYLNKGLEVYIYDEQSDQERT-------Y 171

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTI 322
           YF GG+  +++    NR +   +      +   T    +E AI + +   +   ++ N +
Sbjct: 172 YFEGGITGFVRHLNRNREVRHRQPIYITKKSDSTI---LEVAIQYNDGYSDSTLTFANCV 228

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFA 380
            T +GGTH +G R ALTR    YA  ++  +    +++ DD+    V I+SV + EP+F 
Sbjct: 229 NTIDGGTHLTGFRSALTRAFNDYAHKSKFLKDTDPNLMGDDVREGIVAIVSVKLPEPQFE 288

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VN 439
           GQTK KL +++ +  VE+A+ +    YL ++P +  ++LE  I  ++ R   RK R+ + 
Sbjct: 289 GQTKGKLGNIEIKSFVESAVTEQLSLYLEEHPDDTKRILEKCITAAKAREAARKARDLII 348

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK+A+    LPGKLADCS+  A   ELF+VEGDSAGGSAKQ RNR  QA+LPLRGKILNV
Sbjct: 349 RKSALDTGTLPGKLADCSERDASLCELFLVEGDSAGGSAKQGRNRRFQAILPLRGKILNV 408

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
             A  +K+  +++I  ++ AL     + +    LR
Sbjct: 409 EKASPDKMLAHEEIRAIITALAAGIDNDFDPAKLR 443


>gi|194339077|gb|ACF49454.1| GyrB [Amycolatopsis jejuensis]
          Length = 436

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 169/443 (38%), Positives = 252/443 (56%), Gaps = 19/443 (4%)

Query: 77  LFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTT 136
           L  EV+DN++DE +AGYA  +EV+L  +G + VVD+GRGIPV+ HPK   K TLE++LT 
Sbjct: 1   LVQEVVDNSVDEAMAGYATKVEVTLLADGGVRVVDDGRGIPVDMHPK-EQKPTLEVVLTI 59

Query: 137 LHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK 196
           LHAGGKFD+ +Y +SGGLHGVG+SVVNALS  L   V      + Q+++  +P  PLE  
Sbjct: 60  LHAGGKFDSDSYAVSGGLHGVGVSVVNALSTTLLAEVKYAGRSWRQEYTDQVP-GPLEDL 118

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
                  GT ITF  D  IF     ++   + +  Q  A+L+  +      ++   E+  
Sbjct: 119 GPATE-TGTTITFWADDNIFET-TTYNFETISRRLQEMAFLNKGLTLSLRDERVSDEETE 176

Query: 257 IP--------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
                     +++ + +PGGL+ +++    ++  I + + +   +  G     VE A+ W
Sbjct: 177 EDAEGKQARVKEKVYCYPGGLEDFVKHINGSKDPIHASVISFDAKGTG---LEVEVAMQW 233

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
                P + ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  DD+   
Sbjct: 234 NTGFTPSVYTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDANLTGDDVREG 293

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              I+S+ + EP+F GQTKTKL + +A+  V+    +    +  +NP EA  ++   I  
Sbjct: 294 LAAIVSIKLAEPQFEGQTKTKLGNSEAKTFVQQQSNEWLGDWFERNPSEAKTIINKSISS 353

Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           ++ RL  RK R+ V RK A+    LPGKL DC  N     EL+IVEGDSAGGSAK+ R+ 
Sbjct: 354 AQARLAARKARDLVRRKGALEIGGLPGKLKDCRSNDPGECELYIVEGDSAGGSAKEGRDS 413

Query: 485 SNQAVLPLRGKILNVASAGSEKI 507
             QA+LP+RGKI+NV  A  +++
Sbjct: 414 MYQAILPIRGKIINVEKARIDRV 436


>gi|73810188|gb|AAZ86067.1| DNA gyrase subunit B [Burkholderia multivorans ATCC BAA-247]
          Length = 632

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 169/470 (35%), Positives = 253/470 (53%), Gaps = 29/470 (6%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKVRNKR 203
           GVG+S VNALS  L +TV R       +F RG+             +SP++      N R
Sbjct: 1   GVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQDRVIEVVDGEEVSPMQVIGDTEN-R 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E         F
Sbjct: 60  GTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD-------F 111

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            F GG+K +++   + +S +   IF    EK G     VE A+ W +     +  + N I
Sbjct: 112 AFAGGVKGFVEYINKTKSNLHPTIFHVIGEKDGV---GVEVAMQWNDSYNENVLCFTNNI 168

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + EP+F+
Sbjct: 169 PQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFS 228

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
            QTK KLVS + +  VE  +    + +L++ P +A  +   ++E +  R   RK RE+ R
Sbjct: 229 SQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKAREMTR 288

Query: 441 KTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +   +  + LPGKLADC +     +E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+LNV
Sbjct: 289 RKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 348

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTF 558
             A  +K+ +++QI+ LV ALGC         + LRY ++IIMTDADVDGAHI +LLLTF
Sbjct: 349 EKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTF 408

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           FY++M ++IE+ ++++  PPL+++  G    Y  D+      +      G
Sbjct: 409 FYRQMPEMIERGYVYIAQPPLYKVKAGKDERYLKDDAELNAHMLRLALQG 458


>gi|69093248|gb|AAZ03387.1| GyrB [Burkholderia multivorans]
          Length = 614

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 169/470 (35%), Positives = 253/470 (53%), Gaps = 29/470 (6%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKVRNKR 203
           GVG+S VNALS  L +TV R       +F RG+             +SP++      N R
Sbjct: 1   GVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQDRVIEVVDGEEVSPMQVIGDTEN-R 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E         F
Sbjct: 60  GTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD-------F 111

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            F GG+K +++   + +S +   IF    EK G     VE A+ W +     +  + N I
Sbjct: 112 AFAGGVKGFVEYINKTKSNLHPTIFHVIGEKDGV---GVEVAMQWNDSYNENVLCFTNNI 168

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + EP+F+
Sbjct: 169 PQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFS 228

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
            QTK KLVS + +  VE  +    + +L++ P +A  +   ++E +  R   RK RE+ R
Sbjct: 229 SQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKAREMTR 288

Query: 441 KTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +   +  + LPGKLADC +     +E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+LNV
Sbjct: 289 RKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 348

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTF 558
             A  +K+ +++QI+ LV ALGC         + LRY ++IIMTDADVDGAHI +LLLTF
Sbjct: 349 EKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTF 408

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           FY++M ++IE+ ++++  PPL+++  G    Y  D+      +      G
Sbjct: 409 FYRQMPEMIERGYVYIAQPPLYKVKAGKDERYLKDDAELNAHMLRLALQG 458


>gi|109289993|ref|YP_656238.1| gp39plus60 DNA topoisomerase II large subunit [Aeromonas phage 25]
 gi|104345666|gb|ABF72566.1| gp39plus60 DNA topoisomerase II large subunit [Aeromonas phage 25]
          Length = 607

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 139/659 (21%), Positives = 237/659 (35%), Gaps = 81/659 (12%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTD-----------------EKALHHLFSEVIDNAMDE 88
           +   ++L   E V +RP MY+G                       L  +  E+IDN++DE
Sbjct: 2   SDEFKVLTPREHVILRPNMYVGSVAYEPHERFLFGKYQSVSYVPGLVKIIDEIIDNSVDE 61

Query: 89  VIA---GYANLIEVSLDG-NGFLTVVDNGRGIPVENHPKFPN-KSTLEIILTTLHAGGKF 143
            I     +AN I++  D   G +TVVDNGRGIP                  T   AG  F
Sbjct: 62  GIRTDFKFANKIDIRFDLLEGSVTVVDNGRGIPQSMVNTPDGEMPKPVAAWTQTMAGSNF 121

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
            + T  +S G++GVG S+ N  S              +   S G      E   K    +
Sbjct: 122 -DDTKRVSMGMNGVGSSLTNFFSKTFIGETCDGKNFLTVTCSDGASQVNWE--TKPGKIK 178

Query: 204 GTRITFRPDPKIFG--DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           GT + F PD K F            +     + + +  ++K   + +             
Sbjct: 179 GTSVYFIPDEKHFEGKTIDQQIVDIISDRITALSVVFPKIKFTINGE-----------VA 227

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
              F    K +                    E           AI    E     SY N 
Sbjct: 228 SMKFAEYAKMFGD------------------ESLILENDNFSIAICNSPEGFRQVSYVNG 269

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVF-IREPEFA 380
           +    GG+H   L   +     +     + K  I I    +      I++V  +    F 
Sbjct: 270 LNIKNGGSHIDYLVDGIAD---ELIPSIKRKHKIEISKARIKECLTMIVAVRGMSNLRFD 326

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL-RRRKQREVN 439
            QTK +L +   +     +  +     L +  +    +L  +IE +  R     K     
Sbjct: 327 SQTKERLTNPLGEV---KSHIELDFKKLGKQIMNNDAILMPIIEAALARHLAAEKAALTK 383

Query: 440 RKTAIRKLRLPGKLADCSQ-NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + A  K ++   +   S  +I+  T LF+ EGDSA G     R+        LRGK++N
Sbjct: 384 AQKAAAKTKVAKHIKAGSWGDISKETTLFLTEGDSAIGYLLSVRDSELHGGYALRGKVMN 443

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH-IASLLLT 557
                   +  N+++ D+   +G    +    E+ +Y+ V IMTDAD DG   I   LL 
Sbjct: 444 TWGMKGSDVLKNRELADICAIMGLDLANPDDVENRKYKNVAIMTDADPDGQGSIYPCLLA 503

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
           FF +    L +   +  +  P+  +++G ++ + +         E++K       E+   
Sbjct: 504 FFSR-WPKLYDLGCVRFVKTPVVILSKGKQTKWFYTITEFDAQKEKYK-----GWELRYI 557

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           KGLG +   +  E   +              ++   D ++    L+G +A+ R +++ +
Sbjct: 558 KGLGSLREHEYSEVVNNPQY---------DIVDLGPDWEELFEMLLGDEAELRKQWMSQ 607


>gi|73810186|gb|AAZ86066.1| DNA gyrase subunit B [Burkholderia multivorans]
          Length = 632

 Score =  297 bits (760), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 170/470 (36%), Positives = 253/470 (53%), Gaps = 29/470 (6%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKVRNKR 203
           GVG+S VNALS  L +TV R       +F RG+             +SP++      N R
Sbjct: 1   GVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQDRVIEVVDGEEVSPMQVIGDTEN-R 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E         F
Sbjct: 60  GTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD-------F 111

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            F GG+K +++   + +S +   IF    EK G     VE A+ W +     +  + N I
Sbjct: 112 AFAGGVKGFVEYINKTKSNLHPTIFHVIGEKDGV---GVEVAMQWNDSYNENVLCFTNNI 168

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +GLR A+TR I KY    +   K  +    DDL      +LSV + EP+F+
Sbjct: 169 PQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETTGDDLREGLSCVLSVKVPEPKFS 228

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
            QTK KLVS + +  VE  +    + +L++ P +A  +   ++E +  R   RK RE+ R
Sbjct: 229 SQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKAREMTR 288

Query: 441 KTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +   +  + LPGKLADC +     +E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+LNV
Sbjct: 289 RKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 348

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTF 558
             A  +K+ +++QI+ LV ALGC         + LRY ++IIMTDADVDGAHI +LLLTF
Sbjct: 349 EKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTF 408

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           FY++M ++IE+ ++++  PPL+++  G    Y  D+      +      G
Sbjct: 409 FYRQMPEMIERGYVYIAQPPLYKVKAGKDERYLKDDAELNAHMLRLALQG 458


>gi|322510575|gb|ADX05889.1| putative DNA gyrase/DNA topoisomerase IV subunit A [Organic Lake
           phycodnavirus 1]
          Length = 1083

 Score =  297 bits (759), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 130/673 (19%), Positives = 242/673 (35%), Gaps = 86/673 (12%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTDE---------------------KALHHLFSEVIDN 84
           A+  +     E +   P  YIG  +                        L  LF E I N
Sbjct: 4   ATQYQKKTDKEHILDNPDTYIGSIENINGPMYVFEEGKITSKHMDYNPGLFKLFDEGIVN 63

Query: 85  AMDEVIA-----------GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133
             D V+               N+I + +  +  +T+ +NG GI VE HP + +    E++
Sbjct: 64  CRDHVVRMIQQKETNPAVNLVNMINIEISDD-MITMTNNGNGIDVEKHPTY-DVWIPELV 121

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT--IFSQKFSRGIPLS 191
              L     ++    +I+GG +G G  +V   S    +          ++Q F + + + 
Sbjct: 122 FGHLRTSTNYNKDEEKITGGKNGFGFKLVLIWSTYGMIETVDHVRKLKYTQTFEQNLDII 181

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
                 K   +  T + F+PD K  G    +    +   +     A             K
Sbjct: 182 HPPTITKCSKQPYTIVKFKPDYKRLGLNGLSQDMISLFHRRVYDIAG---------ITTK 232

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
           ++  K      +   F   ++ Y      + +      ++                    
Sbjct: 233 DVKVKLNSNVLDVKTFNHYIELYNDQDKISEAPNERWSYSV-----------------CL 275

Query: 310 EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGI 369
            E  +  S+ N I T +GG H   +   + + +  Y E  +    I I    L       
Sbjct: 276 SEEFKQVSFVNGIFTGKGGKHVDYITQQIIKKLIAYIEKKKK---IEIKPSILKEQMYIF 332

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           L+  I  P F  QTK  L +  ++      + D F   L +  I         I+     
Sbjct: 333 LNCTIVNPSFDSQTKDYLNTPPSKFGSSCVVSDKFIEKLAKLGIMEQSCELSKIKEKNNS 392

Query: 430 LRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSN 486
            +    ++ N +   + +             +    L + EGDSA           +R+ 
Sbjct: 393 KKTDGNKQKNIRGIPKLVDANYA----GTKDSKLCTLILCEGDSAKAGILSGLSPNDRNI 448

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDAD 545
             V P++GK+LNV    ++KI  N++I+++ + +G  +  +Y+  D LRY K++ MTD D
Sbjct: 449 YGVYPMKGKLLNVRGEATKKINENKEIIEIKKIMGLESNKKYKNTDELRYNKILFMTDQD 508

Query: 546 VDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           +DG+HI  L +  F      L++    L  ++ P+ + ++GT     ++E+  +   +E 
Sbjct: 509 LDGSHIKGLCINLFECLWSSLLDISGFLGFMNTPILKASKGTHKKQFYNEQEYELWKKE- 567

Query: 605 KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMG 664
             +      I  +KGLG   + + KE   D         +I       +      NK   
Sbjct: 568 -NNEGKGWAIKYYKGLGTSTSKEFKEYFKDKKTM-----DILLGEQDTEKIDMVFNK--- 618

Query: 665 TKADERFKFIQER 677
            K++ R +++   
Sbjct: 619 KKSEHRKEWLSTY 631


>gi|66009737|gb|AAY42700.1| GyrB [Burkholderia pyrrocinia]
 gi|66009759|gb|AAY42701.1| GyrB [Burkholderia pyrrocinia]
 gi|66009779|gb|AAY42702.1| GyrB [Burkholderia pyrrocinia]
 gi|66009801|gb|AAY42703.1| GyrB [Burkholderia pyrrocinia]
          Length = 634

 Score =  297 bits (759), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 169/471 (35%), Positives = 250/471 (53%), Gaps = 27/471 (5%)

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK-----------EKVRNK 202
           LHGVG+S VNALS  L +TV R       +F RGI    + +                  
Sbjct: 1   LHGVGVSCVNALSSWLRLTVRRGGKKRFMEFHRGIAQDRVLEMVDGVEVSPMLVTGDTEN 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
           RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E         
Sbjct: 61  RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD------- 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           F F GG+K +++   + ++ +   IF    EK G     VE A+ W +     +  + N 
Sbjct: 113 FAFAGGVKGFVEYINKTKTNLHPTIFHANGEKDGV---GVEVAMQWNDSYNENVLCFTNN 169

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + EP+F
Sbjct: 170 IPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKF 229

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN 439
           + QTK KLVS + +  VE  +    + +L++ P++A  +   ++E +  R   RK RE+ 
Sbjct: 230 SSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPLDAKIICGKIVEAARARDAARKAREMT 289

Query: 440 RKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
           R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+LN
Sbjct: 290 RRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLN 349

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLT 557
           V  A  +K+ +++QI+ LV ALGC         + LRY ++IIMTDADVDGAHI +LLLT
Sbjct: 350 VEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLT 409

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           F Y++M D+IE+ ++++  PPL++I  G    Y  D+      +      G
Sbjct: 410 FLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQG 460


>gi|21465844|pdb|1KIJ|A Chain A, Crystal Structure Of The 43k Atpase Domain Of Thermus
           Thermophilus Gyrase B In Complex With Novobiocin
 gi|21465845|pdb|1KIJ|B Chain B, Crystal Structure Of The 43k Atpase Domain Of Thermus
           Thermophilus Gyrase B In Complex With Novobiocin
          Length = 390

 Score =  296 bits (757), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 147/381 (38%), Positives = 210/381 (55%), Gaps = 16/381 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +YDAS+IR+L+GLE VR RP MYIGGT  +  HHLF E++DNA+DE +AGYA  I V L+
Sbjct: 2   SYDASAIRVLKGLEGVRHRPAMYIGGTGVEGYHHLFKEILDNAVDEALAGYATEILVRLN 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G LTV DNGRGIPV+  P+   K  +E+I  TLH+GGKF+   Y++SGGLHGVG SVV
Sbjct: 62  EDGSLTVEDNGRGIPVDLMPE-EGKPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221
           NALS+   V V R+       FSRG    PL    +  R K GTR+TF+PDP+IFG+   
Sbjct: 121 NALSEWTVVEVFREGKHHRIAFSRGEVTEPLRVVGEAPRGKTGTRVTFKPDPEIFGN-LR 179

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD +++    +  AYL   +K  +   +   E       E F   GG+ ++ +   E   
Sbjct: 180 FDPSKIRARLREVAYLVAGLKLVFQDRQHGKE-------EVFLDKGGVASFAKALAEGED 232

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTR 340
           L+  + F  +          VE      +    EI +Y N I T +GGTH +  + A +R
Sbjct: 233 LLYEKPFLIRG---THGEVEVEVGFLHTQGYNAEILTYANMIPTRDGGTHLTAFKSAYSR 289

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            + +YA+      ++      DDL+     ++SV +  P+F GQTK KL++ +A   V  
Sbjct: 290 ALNQYAKKAGLNKEKGPQPTGDDLLEGLYAVVSVKLPNPQFEGQTKGKLLNPEAGTAVGQ 349

Query: 399 ALRDPFDHYLVQNPIEATKLL 419
            + +     L +NP  A  + 
Sbjct: 350 VVYERLLEILEENPRIAKAVY 370


>gi|255030521|ref|ZP_05302472.1| DNA topoisomerase IV subunit B [Listeria monocytogenes LO28]
          Length = 317

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 119/328 (36%), Positives = 173/328 (52%), Gaps = 18/328 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + Y+  SI++LEGLE VR RP MYIG TD + LHHL  E++DN++DE +AG+   I V+L
Sbjct: 4   NEYNDDSIQVLEGLEAVRKRPAMYIGSTDVRGLHHLVYEIVDNSVDETLAGFGKKIVVTL 63

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGVGIS 160
             +G ++V D GRG+PV  H     KST+E+ILT LHAGGKF     Y+ SGGLHGVG S
Sbjct: 64  HEDGSVSVSDEGRGMPVGMHK--TGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGVGSS 121

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ L VT+ R    + QKF  G       KK       GT I F+PDP IF    
Sbjct: 122 VVNALSEWLVVTINRDGATYQQKFKDGGKPDGTLKKIGKSKATGTTIRFKPDPAIFPT-T 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F+   L +  +  A+L   +      ++       +   E F+F  G+K +++   E +
Sbjct: 181 SFNYETLSERLRESAFLLKGMLIELIDER-------VGMAEAFHFEEGVKNFVEYINEGK 233

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
            ++     + + E        VE A  + +     I S+ N + T   G+HESG++ A+T
Sbjct: 234 DVLHPV-ASFEGENATI---EVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMT 289

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMIS 365
           R    YA       ++  ++   D+   
Sbjct: 290 RIFNDYARRVNLLKEKDKNLEGSDIREG 317


>gi|68138580|gb|AAY85987.1| GyrB [Burkholderia cepacia]
          Length = 635

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 171/473 (36%), Positives = 254/473 (53%), Gaps = 29/473 (6%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKVR 200
           GLHGVG+S VNALS  L +TV R       +F RG+             +SP+       
Sbjct: 1   GLHGVGVSCVNALSSGLRLTVRRDGKKRFMEFHRGVAQDRVLEVVDGVEVSPMLVTGDT- 59

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
             RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E       
Sbjct: 60  EIRGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD----- 113

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
             F F GG+K +++   + ++ +   +F    EK G     VE A+ W +     +  + 
Sbjct: 114 --FAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGV---GVEVAMQWNDSYNENVLCFT 168

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + EP
Sbjct: 169 NNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEP 228

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F+ QTK KLVS + +  VE  +    + +L++ PI+A  +   ++E +  R   RK RE
Sbjct: 229 KFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKARE 288

Query: 438 VNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
           + R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+
Sbjct: 289 MTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKV 348

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLL 555
           LNV  A  +K+ +++QI+ LV ALGC    +    + LRY ++IIMTDADVDGAHI +LL
Sbjct: 349 LNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLL 408

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           LTF Y++M D+IE+ ++++  PPL++I  G    Y  D+      +      G
Sbjct: 409 LTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQG 461


>gi|330685623|gb|EGG97267.1| putative DNA topoisomerase IV subunit B [Staphylococcus epidermidis
           VCU121]
          Length = 344

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 128/351 (36%), Positives = 189/351 (53%), Gaps = 16/351 (4%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +  ++Y   SI++LEGLE VR RPGMYIG TD++ LHHL  EV+DN++DEV+ GY + I 
Sbjct: 4   NKQNHYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEVVDNSVDEVLNGYGDEIT 63

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V L+ +  +++ DNGRG+P   H     K T+++I T LHAGGKF    Y+ SGGLHGVG
Sbjct: 64  VILNQDDSISIEDNGRGMPTGIH--ASGKPTVQVIFTILHAGGKFGQGGYKTSGGLHGVG 121

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS+ L V + R   I+ Q F  G   +    KE    K GT++TF+PDP+IF  
Sbjct: 122 ASVVNALSEWLEVEIHRDGNIYKQSFKDGGVPATGLLKEGKTKKTGTKVTFKPDPEIFKA 181

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L +  Q  A+L   +K      +   E+             G+K ++    E
Sbjct: 182 TTSFNFDVLSERLQESAFLLKNLKIKLIDLRRGKEREEYYHY-----EEGIKEFVSYVNE 236

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            + ++  ++ T      G     V+ A  + ++    I S+ N + T +GGTHE G + A
Sbjct: 237 GKEVLH-DVTTFTGTSNGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 292

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTK 384
           +TR    YA       ++  ++  +D+      I+SV I E   +F GQTK
Sbjct: 293 MTRVFNDYARRINELKEKDKNLDGNDIREGLTAIVSVRIPEELLQFEGQTK 343


>gi|34419280|ref|NP_899293.1| topoisomerase II large subunit [Vibrio phage KVP40]
 gi|34332961|gb|AAQ64116.1| topoisomerase II large subunit [Vibrio phage KVP40]
          Length = 597

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 143/656 (21%), Positives = 238/656 (36%), Gaps = 89/656 (13%)

Query: 47  SSIRILEGLEPVRMRPGMYIGGTD-----------------EKALHHLFSEVIDNAMDEV 89
            + +IL   + V  RPGMYIG  D                    L  + +EVIDN++DE 
Sbjct: 5   DNFQILSDKQHVLKRPGMYIGSVDREAHERFVLGEYKQIEYVPGLVKIINEVIDNSLDEA 64

Query: 90  IA---GYANLIEVSLDGNGFLTVVDNGRGIPVE--NHPKFPNKSTLEIILTTLHAGGKFD 144
           I     +AN+IEV +     +T+ DNGRGIP +    P        E   T   AG  F+
Sbjct: 65  IRTKFKFANVIEVKV-EGNRITIADNGRGIPQDKVIDPHGNELLRPEAAWTRTKAGSNFE 123

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +     + G++GVG ++ N  S +            +   S       +  +      +G
Sbjct: 124 DD--RTTVGMNGVGAALTNYFSHQFIGKTCDGKNTVTVSCSNN--AERIFVRTSKGGTQG 179

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PD   FG          +   +  A      +  +             +     
Sbjct: 180 TSVEFIPDFNRFGVFGISPQDEEIIKDRLAALSVAFPEITF-------------KYNGKK 226

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILT 324
               LK Y +    + S     +                             S+ N + T
Sbjct: 227 HAPTLKQYAKMFGTDVSFEFDNVALFIAASDE----------------FRHNSFINGVHT 270

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSV-FIREPEFAGQT 383
             GGTH       L     +   + + K  I++    L       L +    +P+F  QT
Sbjct: 271 INGGTHVDYFSNKLAD---ELIPMIKRKHKINVPKPQLKNGLTIGLFIRNFVDPKFDSQT 327

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443
           K +L S      V   L+D     + +  +    ++  +IE    +    + RE+ R   
Sbjct: 328 KERLTSSQGD--VSPYLKDISYDKIAKKILADDDIIMPIIEALLAKQHAAEARELAR--- 382

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
            +K     K+ D  +    G  LF+ EG SA G   + R+      +PLRGK+L+     
Sbjct: 383 KQKKAQNAKVVDHIKATMPGGTLFLTEGKSAIGYLIKVRDSKKHGGIPLRGKVLSTWGKR 442

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH-IASLLLTFFYQE 562
             KI  N+++ D++  L  +  +     D+ Y  + I+ DADVDG   I  LLL FFY  
Sbjct: 443 PAKIMENKELCDIMSVLNIQLGNDDI-RDMYYHDIGILVDADVDGKGSIFPLLLAFFY-N 500

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
             +L +QK +  +  P+   T   ++ + +  +  +K             +I   KGLG 
Sbjct: 501 WPELYKQKRIKFVRTPVVIATNKKETKWFYSIDEYRKAKLS------KTWKIRYIKGLGS 554

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD--SINKLMGTKADERFKFIQE 676
           +   + K+              IN+ +       D      L G   D+R  ++ +
Sbjct: 555 LTEKEYKK-------------VINEPVFDEIVIDDPSCFELLFGDDTDKRKDWMTQ 597


>gi|33636521|gb|AAQ23558.1| RE49802p [Drosophila melanogaster]
          Length = 1157

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 117/568 (20%), Positives = 212/568 (37%), Gaps = 42/568 (7%)

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
                +I   L     +++   +++GG +G G  + N  S    V  A +    S K + 
Sbjct: 1   MYVPTMIFGHLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSTSFTVETATREYKKSFKQTW 60

Query: 187 G--IPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
           G  +  +   + +       TRITF PD              A + +     A  S  V 
Sbjct: 61  GNNMGKASDVQIKDFNGTDYTRITFSPDLAKFKMDRLDEDIVALMSRRAYDVAASSKGVS 120

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
              + +K     +              K Y+   ++N    S        E         
Sbjct: 121 VFLNGNKLGVRNF--------------KDYIDLHIKNTDDDSGPPIKIVHE---VANERW 163

Query: 303 EWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDL 362
           E A    +   +  S+ N+I T +GG H   +   L + + +     +NK  I+I    +
Sbjct: 164 EVACCPSDRGFQQVSFVNSIATYKGGRHVDHVVDNLIKQLLE-VLKKKNKGGINIKPFQV 222

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
                  ++  I  P F  QTK  +         +  L + F      N +  + ++E V
Sbjct: 223 RNHLWVFVNCLIENPTFDSQTKENMTLQQKGFGSKCTLSEKFI-----NNMSKSGIVESV 277

Query: 423 IERSEERLRRRKQREVNRKTAIRKLRLPGKLAD-CSQNIAHGTELFIVEGDSAGGSAKQA 481
           +  ++ + +    +   RK++  K     + A+      +    L + EGDSA   A   
Sbjct: 278 LAWAKFKAQNDIAKTGGRKSSKIKGIPKLEDANEAGGKNSIKCTLILTEGDSAKSLAVSG 337

Query: 482 ---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED----LR 534
                R    V PLRGK+LNV  A  +++  N +I +L + +G + + +Y  ED    LR
Sbjct: 338 LGVIGRDLYGVFPLRGKLLNVREANFKQLSENAEINNLCKIIGLQYKKKYLTEDDLKTLR 397

Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDE 594
           Y KV+IMTD D DG+HI  LL+ F +    +L+    L     P+ + T+  + +  +  
Sbjct: 398 YGKVMIMTDQDQDGSHIKGLLINFIHTNWPELLRLPFLEEFITPIVKATKKNEELSFYSL 457

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
              ++   +   H      I  +KGLG   + + KE   D ++  +L           + 
Sbjct: 458 PEFEEWKNDTANHHT--YNIKYYKGLGTSTSKEAKEYFQDMDRHRILF--KYDGSVDDES 513

Query: 655 TQDSINKLMGTKADERFKFIQERASFID 682
              + +K      + R  ++      + 
Sbjct: 514 IVMAFSK---KHIESRKVWLTNHMDEVK 538


>gi|313609060|gb|EFR84778.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes FSL F2-208]
          Length = 308

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 117/319 (36%), Positives = 167/319 (52%), Gaps = 16/319 (5%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           + Y+  SI++LEGLE VR RP MYIG TD + LHHL  E++DN++DE +AG+   I V+L
Sbjct: 4   NAYNDDSIQVLEGLEAVRKRPAMYIGSTDVRGLHHLVYEIVDNSVDETLAGFGKKIVVTL 63

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGVGIS 160
             +G ++V D GRG+PV  H     K T+E+ILT LHAGGKF     Y+ SGGLHGVG S
Sbjct: 64  HEDGSVSVSDEGRGMPVGMHK--TGKPTVEVILTVLHAGGKFGQEGGYKTSGGLHGVGSS 121

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ L VT+ R    + QKF  G       KK       GT I F+PDP IF    
Sbjct: 122 VVNALSEWLVVTINRDGATYQQKFKDGGKPDGTLKKIGKSKATGTTIRFKPDPAIFPT-T 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F+   L +  +  A+L   +      ++       +   E F+F  G+K +++   E +
Sbjct: 181 SFNYETLSERLRESAFLLKGMLIELIDER-------VGMAEVFHFEEGVKNFVEYINEGK 233

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
            ++     + + E        VE A  + +     I S+ N + T   G+HESG++ A+T
Sbjct: 234 DVLHPV-ASFEGENATI---EVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMT 289

Query: 340 RGIKKYAELTQNKRAISII 358
           R    YA      +     
Sbjct: 290 RIFNDYARRVNLLKEKDKN 308


>gi|53854901|gb|AAU95770.1| topoisomerase II [Paramecium bursaria Chlorella virus Marburg 1]
          Length = 1058

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 138/674 (20%), Positives = 241/674 (35%), Gaps = 90/674 (13%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTD---------------------EKALHHLFSEVIDN 84
           AS    L   E V  RP  Y+G  +                       A   +F E++ N
Sbjct: 2   ASKYIKLSQREHVLARPDTYVGSVEKELRNDFVYDGAKITKKDVLYSPAFLKIFDEILVN 61

Query: 85  AMDEVIAG-YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143
           + D    G     ++V++  +  +++ ++G  I +E +         E+I   L +G  F
Sbjct: 62  SADCFNRGGAMTTLKVTISKD-SISIFNDGCSISLEKND--EGIYIPEMIFGHLLSGENF 118

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D++      G +G G  + N  S    V +   +  + Q +S  +      K  K     
Sbjct: 119 DDTEERTGAGRNGYGSKLTNIFSKIFSVEIYDGSHKYVQSWSDNMISVSKAKITKSSKAP 178

Query: 204 GTRITFRPDPKIFGD--KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
               +F PD   FG         + L++     A + G V+      +   +        
Sbjct: 179 SITTSFVPDLARFGMTDIDDDTRSILVRRVYDMAAVLGSVRVFLDGKRLEVK-------- 230

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
                                   + F   T++K        W+I     N         
Sbjct: 231 ---------------------TPLDYFKLYTDEKVVFESADGWSIGVAPANEFACVSFVN 269

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
                GGTH   +  ++ + + + A     K+   +    +       ++  I  P F+ 
Sbjct: 270 ASAARGGTHVDAVVNSIAKAVVEAAS----KKKTIVKPTMVKNKLFVFVNAKIVNPTFSS 325

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK  L S + + +   A                  +L+ VI  +  R      R + + 
Sbjct: 326 QTKDILTSRNIKFSPSAAFLKKA----------TGLVLDAVIAETNVRESLVDARLLKKT 375

Query: 442 TAIRKLR--LPGKLADCSQNIAHG---TELFIVEGDSAGGSAKQARN---RSNQAVLPLR 493
             ++K R     KL D +           L + EGDSA   A        R    + PLR
Sbjct: 376 DGVKKTRLTGIKKLTDAAWAGTKNSGLCTLILTEGDSAATLATAGLAVVGRERYGIFPLR 435

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIA 552
           GK+LNV  A    I  N +I  + Q LG +    Y++   LRY  V++MTDADVDG+HI+
Sbjct: 436 GKLLNVRDASVSSIAANAEIAAIKQILGLQVGKTYKDASSLRYGSVMLMTDADVDGSHIS 495

Query: 553 SLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK 611
           +L++ FF+ +   L+     L   S P+   ++G      +     +   +        K
Sbjct: 496 ALVMNFFHAQFPSLLAVPGFLKKFSTPIVVASRGKDIKEFYSLPDYESWKQNTADC--AK 553

Query: 612 IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERF 671
             I  FKGLG   +   K+   +     L+++      +S +    S NK   ++ DER 
Sbjct: 554 WSIKYFKGLGTSTSEDAKKYFKNLKS--LVKI-FGWTEDSGELIDRSFNK---SRPDERK 607

Query: 672 KFIQ--ERASFIDD 683
            ++   +  + +D 
Sbjct: 608 TWLLDFQPGNQLDQ 621


>gi|68138636|gb|AAY85994.1| GyrB [Burkholderia multivorans]
          Length = 631

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 168/469 (35%), Positives = 252/469 (53%), Gaps = 29/469 (6%)

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKVRNKRG 204
           VG+S VNALS  L +TV R       +F RG+             +SP++      N RG
Sbjct: 1   VGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQDRVIEVVDGEEVSPMQVIGDTEN-RG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F  DP IFG    +    L K  +  ++L+  V+   +  +   E         F 
Sbjct: 60  TEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD-------FA 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           F GG+K +++   + +S +   IF    EK G     VE A+ W +     +  + N I 
Sbjct: 112 FAGGVKGFVEYINKTKSNLHPTIFHVIGEKDGV---GVEVAMQWNDSYNENVLCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + EP+F+ 
Sbjct: 169 QRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK KLVS + +  VE  +    + +L++ P +A  +   ++E +  R   RK RE+ R+
Sbjct: 229 QTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKAREMTRR 288

Query: 442 TA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
              +  + LPGKLADC +     +E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+LNV 
Sbjct: 289 KGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFF 559
            A  +K+ +++QI+ LV ALGC         + LRY ++IIMTDADVDGAHI +LLLTFF
Sbjct: 349 KARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFF 408

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           Y++M ++IE+ ++++  PPL+++  G    Y  D+      +      G
Sbjct: 409 YRQMPEMIERGYVYIAQPPLYKVKAGKDERYLKDDAELNAHMLRLALQG 457


>gi|323462873|pdb|3LNU|A Chain A, Crystal Structure Of Pare Subunit
 gi|323462877|pdb|3LPS|A Chain A, Crystal Structure Of Pare
          Length = 408

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 145/400 (36%), Positives = 219/400 (54%), Gaps = 18/400 (4%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y+A+ I +L GL+PV+ RPGMY   TD    +HL  EVIDN++DE +AG+A  IEV+L  
Sbjct: 24  YNAADIEVLSGLDPVKRRPGMY---TDTARPNHLAQEVIDNSVDEALAGHAKQIEVTLYK 80

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G   V D+GRG+PV+ HP+      +E+ILT LHAGGKF+N  Y  SGGLHGVG+SVVN
Sbjct: 81  DGSCEVSDDGRGMPVDIHPE-EKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVSVVN 139

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222
           ALS ++ + + R+ +    +F  G   S LE    V +   GTR+ F  DPK F     F
Sbjct: 140 ALSTKVELFIKREGSEHRMEFRDGNAASKLEVVGTVGKKNTGTRLRFWADPKYFDT-PKF 198

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L  + ++KA L   +      +          E++ +YF  GL+ YL+ ++    +
Sbjct: 199 NVRALRHLLRAKAVLCPGLTVKLHDE-------ATGEQDSWYFENGLRDYLKGEMAEHEM 251

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRG 341
           + +++F G  +K       V+WA  W  E      SY N I T + GTH +GLR  LT  
Sbjct: 252 LPADLFVGSLKKDTEI---VDWAAGWVPEGELVQESYVNLIPTAQHGTHVNGLRSGLTDA 308

Query: 342 IKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
           ++++ +      R + +  +D+      +LS+ + +P+F+GQTK +L S  A   +E A 
Sbjct: 309 LREFCDFRNLLPRGVKLAPEDVWDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAA 368

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
            D F  YL QN     K+ +  I+R+  RL+  KQ    +
Sbjct: 369 HDAFSLYLNQNVEIGEKIAQIAIDRASARLKTEKQIVRKK 408


>gi|155370647|ref|YP_001426181.1| hypothetical protein FR483_N549R [Paramecium bursaria Chlorella
           virus FR483]
 gi|155123967|gb|ABT15834.1| hypothetical protein FR483_N549R [Paramecium bursaria Chlorella
           virus FR483]
          Length = 1058

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 139/674 (20%), Positives = 242/674 (35%), Gaps = 90/674 (13%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTD---------------------EKALHHLFSEVIDN 84
           AS    L   E V  RP  Y+G  +                       A   +F E++ N
Sbjct: 2   ASKYIKLSQREHVLARPDTYVGAVEKELRNDFVYDGAKITKKDVLYSPAFLKIFDEILVN 61

Query: 85  AMDEVIAG-YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143
           + D    G     ++V++  +  ++V ++G  IP+E +         E+I   L +G  F
Sbjct: 62  SADCFNRGGAMTTLKVAISKD-CISVYNDGCSIPLEKND--EGVYIPEMIFGHLLSGENF 118

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D++      G +G G  + N  S    V +   +  + Q +S  +      K  K     
Sbjct: 119 DDTEERTGAGRNGYGSKLTNIFSKIFSVEIYDGSHKYVQSWSDNMISVSKAKITKSSKAP 178

Query: 204 GTRITFRPDPKIFGD--KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
               +F PD   FG         + L++     A + G V+      +   +        
Sbjct: 179 SITTSFVPDLARFGMTDIDDDTRSILVRRVYDMAAVLGSVRVFLDGKRLEVK-------- 230

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
                                   + F   T++K        W+I     N         
Sbjct: 231 ---------------------TPLDYFKLYTDEKVVFESADGWSIGVAPANEFACVSFVN 269

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
                GGTH   +  ++ + + + A     K+   +    +       ++  +  P F+ 
Sbjct: 270 ASAARGGTHVDAVVNSIAKAVVEAAS----KKKTIVKPAMVKNKLFVFVNAKVVNPTFSS 325

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK  L S + + +   A                  +L+ VI  +  R      R + + 
Sbjct: 326 QTKDILTSRNIKFSPSAAFLKKA----------TGLVLDAVIAETNVRESLVDARLLKKT 375

Query: 442 TAIRKLR--LPGKLADCSQNIAHG---TELFIVEGDSAGGSAKQARN---RSNQAVLPLR 493
             ++K R     KL D +           L + EGDSA   A        R    + PLR
Sbjct: 376 DGVKKTRLTGIKKLTDAAWAGTKNSGLCTLILTEGDSAATLATAGLAVVGRERYGIFPLR 435

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIA 552
           GK+LNV  A    I  N +I  + Q LG +    Y++   LRY  V++MTDADVDG+HI+
Sbjct: 436 GKLLNVRDASVSSIAANAEIAAIKQILGLQVGKTYKDASSLRYGSVMLMTDADVDGSHIS 495

Query: 553 SLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK 611
           +L++ FF+ +   L+     L   S P+   ++G      +     +   +        K
Sbjct: 496 ALVMNFFHAQFPSLLAVPGFLKKFSTPIVVASRGKDINEFYSLPDYESWKQNTADC--AK 553

Query: 612 IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERF 671
             I  FKGLG   +   K+   +     L+++      +S +    S NK   ++ DER 
Sbjct: 554 WSIKYFKGLGTSTSEDAKKYFKNLKS--LVKI-FGWTEDSGELIDRSFNK---SRPDERK 607

Query: 672 KFIQ--ERASFIDD 683
            ++   +  + +D 
Sbjct: 608 TWLLDFQPGNQLDQ 621


>gi|310722198|ref|YP_003969022.1| DNA topoisomerase II large subunit [Aeromonas phage phiAS4]
 gi|306021041|gb|ADM79576.1| DNA topoisomerase II large subunit [Aeromonas phage phiAS4]
          Length = 607

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 138/659 (20%), Positives = 236/659 (35%), Gaps = 81/659 (12%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTD-----------------EKALHHLFSEVIDNAMDE 88
           +   ++L   E V +RP MY+G                       L  +  E+IDN++DE
Sbjct: 2   SDEFKVLTPREHVILRPNMYVGSVAYEPHERFLFGKYQSVSYVPGLVKIIDEIIDNSVDE 61

Query: 89  VIA---GYANLIEVSLDG-NGFLTVVDNGRGIPVENHPKFPN-KSTLEIILTTLHAGGKF 143
            I     +AN I++  D   G +TV DNGRGIP                  T   AG  F
Sbjct: 62  GIRTDFKFANKIDIRFDLLEGSVTVADNGRGIPQSLVNTPDGEMPKPVAAWTQTMAGSNF 121

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D++   +S G++GVG S+ N  S              +   S G      E   K    +
Sbjct: 122 DDTN-RVSMGMNGVGSSLTNFFSKTFIGETCDGKNFLTVTCSDGASQVNWE--TKPGKIK 178

Query: 204 GTRITFRPDPKIFG--DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           GT + F PD K F            +     + + +  ++K   + +             
Sbjct: 179 GTSVYFIPDEKHFEGKTIDQQIVDIISDRITALSVVFPKIKFTINGE-----------VA 227

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
              F    K +                    E           AI    E     SY N 
Sbjct: 228 SMKFAEYAKMFGD------------------ESLILENDNFSIAICNSPEGFRQVSYVNG 269

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVF-IREPEFA 380
           +    GG+H   L   +     +     + K  I I    +      I+ V  +    F 
Sbjct: 270 LNIKNGGSHIDYLIDGIAD---ELIPSIKRKYKIEISKARIKECLTMIVVVRGMSNLRFD 326

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL-RRRKQREVN 439
            QTK +L +   +     +  +     L +  +    +L  +IE +  R     K     
Sbjct: 327 SQTKERLTNPLGEV---KSHIELDFKKLGKQIMNNDAILMPIIEAALARHLAAEKAALTK 383

Query: 440 RKTAIRKLRLPGKLADCSQ-NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + A  K ++   +   S  +I+  T LF+ EGDSA G     R+        LRGK++N
Sbjct: 384 AQKAAAKTKVAKHIKAGSWGDISKETTLFLTEGDSAIGYLLSVRDSELHGGYALRGKVMN 443

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH-IASLLLT 557
                   +  N+++ D+   +G    +    E+ +Y+ V IMTDAD DG   I   LL 
Sbjct: 444 TWGMKGSDVLKNRELADICAIMGLDLANPDDVENRKYKNVAIMTDADPDGQGSIYPCLLA 503

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617
           FF +    L +   +  +  P+  +++G ++ + +         E++K       E+   
Sbjct: 504 FFSR-WPKLYDLGCVRFVKTPVVILSKGKQTKWFYTITEFDAQKEKYK-----GWELRYI 557

Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           KGLG +   +  E   +              ++   D ++    L+G +A+ R +++ +
Sbjct: 558 KGLGSLREHEYSEVVNNPQY---------DIVDLGPDWEELFEMLLGDEAELRKQWMSQ 607


>gi|167756991|ref|ZP_02429118.1| hypothetical protein CLORAM_02540 [Clostridium ramosum DSM 1402]
 gi|167703166|gb|EDS17745.1| hypothetical protein CLORAM_02540 [Clostridium ramosum DSM 1402]
          Length = 315

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 116/321 (36%), Positives = 169/321 (52%), Gaps = 16/321 (4%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
               +A  NYD S+I+ILEGLE VR RPGMYIG TD + LHHL  E++DNA+DE ++G+ 
Sbjct: 1   MNYMAAKSNYDESNIQILEGLEAVRKRPGMYIGSTDARGLHHLVWEIVDNAIDEALSGFG 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD-NSTYEISGG 153
           + I+V++  +  + V D+GRG+P   H     K T E+ILT LHAGGKF+ +  Y+ SGG
Sbjct: 61  DNIQVTICKDNSIKVTDHGRGMPTGMH--ASGKPTTEVILTILHAGGKFNEDGGYKTSGG 118

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG SVVNALS  L VT+ R   I+ Q+F  G       K     N+ GT I F PD 
Sbjct: 119 LHGVGASVVNALSSWLEVTIYRDGKIWQQRFEDGGSKVGKLKVIGKSNQTGTTIHFMPDS 178

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF     ++ + + +     A+L   +K     ++   E         + +  GL  ++
Sbjct: 179 SIFSV-YEYNFSTISERLMESAFLLKGIKIDLVDERTGKEIS-------YQYDNGLTAFV 230

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +     +  ++  I    T     +   V+ A+ +         S+ N + T +GGTHE+
Sbjct: 231 EYLNYEKETLNEIINIEGT----NNEIEVDVAMQFTSGYQETTLSFVNLVRTGDGGTHET 286

Query: 333 GLRVALTRGIKKYAELTQNKR 353
           G R ALTR   +YA      +
Sbjct: 287 GFRSALTRTFNEYARKYGLLK 307


>gi|330466712|ref|YP_004404455.1| DNA topoisomerase [Verrucosispora maris AB-18-032]
 gi|328809683|gb|AEB43855.1| DNA topoisomerase [Verrucosispora maris AB-18-032]
          Length = 1169

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 148/471 (31%), Positives = 215/471 (45%), Gaps = 44/471 (9%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y A  +  LEGL+ VR RPGMYIG TD + + HL +E++DN+ DE +AG+A  IEV+L  
Sbjct: 9   YGADDLTHLEGLDAVRKRPGMYIGSTDSRGVGHLVNEILDNSTDEGVAGHATTIEVTLHA 68

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G + V D+GRGIP + H +    S +E++LT LHAGGKF  S Y+ SGGLHGVG S VN
Sbjct: 69  DGSVQVDDDGRGIPTDVHAR-SGISGVELVLTRLHAGGKFGGSGYKTSGGLHGVGASAVN 127

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR----------------NKRGTRI 207
           ALS    VTV R   + +  F  G+P                            + GT I
Sbjct: 128 ALSRRFDVTVRRSGKVHTMSFRHGVPGIFDGDGPDAPFTPGPGLQVVGAMKRGQRTGTSI 187

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            +  DP+ F   A  D   +    +  A+L   V                P KE+F++P 
Sbjct: 188 RYWYDPRYFETGATLDHDAVRAKLRHTAFLVPGVSYTLRDL-----TAEEPTKEQFHYPN 242

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTE---------------KKGTHRGTVEWAIAWCEEN 312
           GL   ++          S       E                    R  +E A  W    
Sbjct: 243 GLTDMVEFLAPAGDRPVSGTLLVTGEGTYRENAADANGVMQSNVQRRAEIEVAFRWGTGY 302

Query: 313 PEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ---NKRAISIISDDLMISAVG 368
                 + NTI    GGTH  G   AL R +      T+     +  +   DD++     
Sbjct: 303 ERTVECFTNTIRNAHGGTHRKGFERALARTLADAVRNTRGLLKAKEDAPTLDDVLEGMTA 362

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL--VQNPIEATKLLEWVIERS 426
           ++ V + EP+F  QTK +L +    + V+  +      +L   +   EA  +L+ +++ +
Sbjct: 363 VVHVRVPEPQFTSQTKDELSTAGVTKVVQGLVEQHLKSWLDDRKTKTEARTVLQKIVDAA 422

Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
             RL +++Q++   RKTA+    +P KL DC       +ELFIVEGDSA G
Sbjct: 423 RVRLTQKQQKDAARRKTALEGAAMPAKLVDCRATGVDRSELFIVEGDSALG 473



 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 81/259 (31%), Positives = 134/259 (51%), Gaps = 10/259 (3%)

Query: 428  ERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
             RLR       ++  ++  L     + D +    H     +  G     SA+ AR    Q
Sbjct: 911  ARLREAAALVNHQVVSVEPLDETADVYDLTVEGYHN--FALEAGVFVHNSARVARTAEYQ 968

Query: 488  AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVD 547
            A+LP+RGKILNV  A  +++ +N +   +VQ LG  +   +    +RY +V+IM DADVD
Sbjct: 969  ALLPIRGKILNVQKANLQQVLDNAECAAIVQVLGAGSGRTFDLSAMRYGRVLIMADADVD 1028

Query: 548  GAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT---QGTKSVYAHDEEHKQKILEEF 604
            GAHI +LL+T F + M  LIE   L+   PPL +IT   +  ++++ + +   +  + + 
Sbjct: 1029 GAHIRTLLITLFARYMRPLIEAGRLYAAMPPLHKITTKGRNPETIFTYTQAEMEATVRKL 1088

Query: 605  KKHGKGKIE-ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLM 663
            ++ GK  +  I RFKGLGEM A +L ET M+   R++ R+ +      +   +  +  LM
Sbjct: 1089 EQAGKQIVTPIPRFKGLGEMDADELWETTMNPATRSVRRITLED----VDAAERILELLM 1144

Query: 664  GTKADERFKFIQERASFID 682
            G K + R  ++ + A  +D
Sbjct: 1145 GEKVEPRRNWLIDSADRVD 1163


>gi|165968976|gb|ABY76044.1| topoisomerase IV subunit ParE [Neochlamydia hartmannellae]
          Length = 497

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 151/544 (27%), Positives = 258/544 (47%), Gaps = 57/544 (10%)

Query: 107 LTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALS 166
           +++ D GRGIP+           +E + + ++ G K+++  ++ S GL+GVG   VNALS
Sbjct: 4   VSIRDYGRGIPLGK--------VIECV-SQINTGAKYNDDVFQFSVGLNGVGTKAVNALS 54

Query: 167 DELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAAR 226
               V   R    F  +FSRG  +   +K+   +   GT I F PD +IF     F    
Sbjct: 55  SYFLVKSHRDGRYFEAEFSRG--ILQNQKEGPTKESNGTFIEFVPDTEIFKKFR-FQKEY 111

Query: 227 LLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSE 286
           ++K     AYL+  +K  ++ ++  ++              GL   L +++     +   
Sbjct: 112 IIKRLWHYAYLNTGLKIRFNDEEIESK-------------NGLLDLLNSEVVTDDRLYEP 158

Query: 287 IFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY 345
           +              +E+A    +       S+ N   T +GGTH S  R  + +G+ +Y
Sbjct: 159 LHH--------RGKMLEFAFLHTQSYGETYFSFVNGQYTADGGTHLSAFREGILKGVNEY 210

Query: 346 AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
           +     K+  +    D+    VG + V +++P F  QTK KL + + +  V   ++D   
Sbjct: 211 S-----KK--NFQGVDVREGIVGTILVKVKDPLFESQTKNKLGNNELRGPVVQEVKDAVI 263

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTE 465
             L +NP  A +++E ++   + R      ++  ++   +      KL DC  +   GTE
Sbjct: 264 DLLYKNPTTANQIIERIVFNEKLRKELANVKKEAKEKQKKISFKIPKLRDCKYHFQDGTE 323

Query: 466 ------LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
                 +F+ EGDSA  S   AR+   QAV  LRGK LNV     +++  N+++ +L+ A
Sbjct: 324 HGERSMIFLTEGDSASASVVAARDPLTQAVFSLRGKPLNVHGMKLDQLYKNEEMFNLMSA 383

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           L            LRY+K+++ TDADVDG HI +LL+TFF      L+   HL ++  PL
Sbjct: 384 LNVE----DDINQLRYQKIVLATDADVDGMHIRNLLITFFLTYFEGLVLNGHLHILETPL 439

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           F++    K+ Y ++EE + + +E+ KK     +EI+RFKGLGE+  ++ K+         
Sbjct: 440 FKVRNKEKTFYCYNEEERDQAIEKLKK----GVEITRFKGLGEISPNEFKQFIS--KDIR 493

Query: 640 LLRV 643
           L+ V
Sbjct: 494 LIPV 497


>gi|310781283|gb|ADP24117.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 402

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 155/414 (37%), Positives = 231/414 (55%), Gaps = 17/414 (4%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
             + LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  
Sbjct: 1   GSRGLHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPA 59

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
           +E+ LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P
Sbjct: 60  VEVALTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHGKIYRQIYERGVP 119

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            + LE   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      ++
Sbjct: 120 KTDLEVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDER 177

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
           +  E       E F + GG+ ++++    N+ ++  E    + +        VE  + + 
Sbjct: 178 DGKE-------EVFNYEGGIISFVKYLNRNKEVLHEEPIYMEAKNND---YEVEVCMQYN 227

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISA 366
           +     I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+    
Sbjct: 228 DSYNENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGL 287

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             I+SV ++ P+F GQTKTKL + + +  VEN + +    +L +NP  A  ++E   + +
Sbjct: 288 TAIVSVKLKNPQFEGQTKTKLGNSEMRSIVENVVTEKLTAFLEENPSVAKIIVEKATQAA 347

Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
             R   RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSAK
Sbjct: 348 RAREAARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAK 401


>gi|58761295|gb|AAW82362.1| DNA gyrase subunit B [Dehalococcoides sp. WL]
          Length = 441

 Score =  294 bits (751), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 170/454 (37%), Positives = 258/454 (56%), Gaps = 17/454 (3%)

Query: 85  AMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144
           ++DE +AG  + I+V +  +G ++V DNGRGIPV+ HP     S LE ++T LHAG KF 
Sbjct: 1   SVDEAMAGVCDRIKVIMFKDGSVSVEDNGRGIPVDIHP-VTKISALETVMTVLHAGAKFG 59

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
             TY++SGGLHGVG SVVNAL++   V V R   I+ Q + RG P +PLE+   V +  G
Sbjct: 60  GKTYQVSGGLHGVGASVVNALAEWTTVKVRRNGKIYQQSYQRGKPSTPLEEIG-VSDGSG 118

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F+ D +IF     +D   L    +  AYL+  ++     ++   E+        +Y
Sbjct: 119 TTTIFKADSQIFST-TEYDFEILTDRLREIAYLNKGLEVYIYDEQSDQERT-------YY 170

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTIL 323
           F GG+  +++    NR +   +      +   T    +E AI + +   +   ++ N + 
Sbjct: 171 FEGGITGFVRHLNRNREVRHRQPIYITKKSDSTI---LEVAIQYNDGYSDSTLTFANCVN 227

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T +GGTH +G R ALTR    YA  ++  +    +++ DD+    V I+SV + EP+F G
Sbjct: 228 TIDGGTHLTGFRSALTRAFNDYAHKSKFLKDTDPNLMGDDVREGIVAIVSVKLPEPQFEG 287

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTK KL +++ +  VE+A+ +    YL ++P +  ++LE  I  ++ R   RK R+ + R
Sbjct: 288 QTKGKLGNIEIKSFVESAVAEQLSLYLEEHPDDTKRILEKCITAAKAREAARKARDLIIR 347

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS+  A   ELF+VEGDSAGGSAKQ RNR  QA+LPLRGKILNV 
Sbjct: 348 KSALDTGTLPGKLADCSERDASLCELFLVEGDSAGGSAKQGRNRRFQAILPLRGKILNVE 407

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
            A  +K+  +++I  ++ AL     + +    LR
Sbjct: 408 KASPDKMLAHEEIRAIITALAAGIDNDFDPAKLR 441


>gi|66009643|gb|AAY42694.1| GyrB [Burkholderia dolosa]
 gi|66009656|gb|AAY42695.1| GyrB [Burkholderia dolosa]
 gi|167077367|gb|ABZ10905.1| DNA gyrase subunit B [Burkholderia dolosa]
          Length = 630

 Score =  294 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 167/468 (35%), Positives = 250/468 (53%), Gaps = 29/468 (6%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKVRNKRGT 205
           G+S VNALS  L +TV R       +F RG+             +SP++      N RGT
Sbjct: 1   GVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQNRILETVDGEEVSPMQIIGDTEN-RGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            + F  DP IFG    +    L K  +  ++L+  V+   +  +   E         F F
Sbjct: 60  EVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD-------FAF 111

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG+K +++   + +S +   IF    EK G     VE A+ W +     +  + N I  
Sbjct: 112 AGGVKGFVEYINKTKSNLHPTIFHVIGEKDGV---GVEVAMQWNDSYNENVLCFTNNIPQ 168

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + EP+F+ Q
Sbjct: 169 RDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQ 228

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK KLVS + +  VE  +    + +L++ P +A  +   ++E +  R   RK RE+ R+ 
Sbjct: 229 TKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKAREMTRRK 288

Query: 443 A-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+LNV  
Sbjct: 289 GVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEK 348

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +K+ +++QI+ LV ALGC         + LRY ++IIMTDADVDGAHI +LLLTFFY
Sbjct: 349 ARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFFY 408

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++M +++E+ ++++  PPL++I  G    Y  D+      +      G
Sbjct: 409 RQMPEMVERGYVYIAQPPLYKIKAGKDERYLKDDAELNAHMLRLALQG 456


>gi|310781009|gb|ADP23980.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 402

 Score =  294 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 156/414 (37%), Positives = 231/414 (55%), Gaps = 17/414 (4%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
             + LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  
Sbjct: 1   GSRGLHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPA 59

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
           +E+ LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P
Sbjct: 60  VEVALTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVP 119

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            + LE   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      ++
Sbjct: 120 KTDLEVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDER 177

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
           +  E       E F + GG+ ++++    N+ ++  E    + +        VE  + + 
Sbjct: 178 DGKE-------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYN 227

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISA 366
           +     I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+    
Sbjct: 228 DSYNENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGL 287

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             I+SV ++ P+F GQTKTKL + + +  VEN + D    +L +NP  A  ++E   + +
Sbjct: 288 TAIVSVKLKNPQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAA 347

Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
             R   RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSAK
Sbjct: 348 RAREAARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAK 401


>gi|310780999|gb|ADP23975.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 400

 Score =  294 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 155/413 (37%), Positives = 230/413 (55%), Gaps = 17/413 (4%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
             + LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  
Sbjct: 1   GSRGLHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPA 59

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
           +E+ LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P
Sbjct: 60  VEVALTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVP 119

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            + LE   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      ++
Sbjct: 120 KTDLEVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDER 177

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
           +  E       E F + GG+ ++++    N+ ++  E    + +        VE  + + 
Sbjct: 178 DGKE-------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYN 227

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISA 366
           +     I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+    
Sbjct: 228 DSYNENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGL 287

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             I+SV ++ P+F GQTKTKL + + +  VEN + D    +L +NP  A  ++E   + +
Sbjct: 288 TAIVSVKLKNPQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAA 347

Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
             R   RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSA
Sbjct: 348 RAREAARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSA 400


>gi|239735441|dbj|BAH70487.1| gyrase B subunit [Cardinium endosymbiont of Oligonychus ilicis]
          Length = 462

 Score =  293 bits (750), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 175/468 (37%), Positives = 263/468 (56%), Gaps = 16/468 (3%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+S VNALS  L VTV R   I+ Q++++GIPL  +++       RGT + F PD
Sbjct: 1   GLHGVGVSCVNALSAHLEVTVYRNEKIYKQEYAQGIPLYSVKEIGSTA-LRGTTVHFTPD 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
             IF     ++   ++   Q  AYL+  +K      +E  ++   P +++F+  GGL  +
Sbjct: 60  SSIFTTTI-YNLHTIVNRLQELAYLNVGLKMQLKDHRERDDQG-NPFEQKFHSEGGLLEF 117

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           +      +  I       + EK       V+ A+ +       + SY N I T EGG H 
Sbjct: 118 VSHLDSTKVSIMPAPILVEGEKNNII---VQVAMTYNTGYSETVVSYVNNIHTIEGGMHV 174

Query: 332 SGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G + ALTR +K YA+ +    K  I II DD       ++SV + EP+F GQT+TKL +
Sbjct: 175 TGFKRALTRTLKSYADKSGLLEKAKIEIIGDDFREGLTAVISVKVAEPQFEGQTRTKLGN 234

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRKLR 448
            + Q  VE+ + +   +YL ++P EA  ++  V +     +  R+ +  V RK  +    
Sbjct: 235 AEVQGAVESCVAEVLHYYLEEHPKEAKLIINKVTVAAQARQAARKAREMVQRKNVLMSNS 294

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS+      ELF+VEGDSAGG+AK  RNR  QA+LPL+GKILNV  A + KI 
Sbjct: 295 LPGKLADCSERDPALCELFLVEGDSAGGTAKMGRNRRFQAILPLKGKILNVEKAQTYKIY 354

Query: 509 NNQQIMDLVQALGCRT-----RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +N+Q+ +++ ALG              + LRY K++IMTDADVDG+HI +L+LTFF++ M
Sbjct: 355 DNEQVRNMITALGVSMGTDGTDQATHLDKLRYHKIVIMTDADVDGSHIRTLILTFFFRYM 414

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK-KHGKG 610
            ++IE+ HL++ SPPL+ + +  +  Y   E  K+K ++E   K GK 
Sbjct: 415 REVIEKGHLYIASPPLYLVKRDKEEHYCWTELEKEKWVKELSLKDGKA 462


>gi|288561852|gb|ADC53562.1| DNA gyrase subunit beta [Acidovorax citrulli]
          Length = 437

 Score =  293 bits (750), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 160/445 (35%), Positives = 237/445 (53%), Gaps = 35/445 (7%)

Query: 62  PGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           PGMYIG T D   LHHL  EV+DN++DE +AG+ + I V++  +  ++VVDNGRGIP   
Sbjct: 1   PGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHSDNSISVVDNGRGIPTGV 60

Query: 121 ---HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN 177
                  P +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV R  
Sbjct: 61  KMDDKHEPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKMLRLTVRRDG 120

Query: 178 TIFSQKFSR------------GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225
            +   +FS+            G+ +SP+    +  +KRGT + F PD +IF +   F   
Sbjct: 121 KVHLLEFSQGFVQNRILETVNGVEVSPMRVTGET-DKRGTEVHFLPDTEIFKENNDFHYE 179

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
            L K  +  ++L+  V+     ++   E         F   GG+  ++Q    ++ ++  
Sbjct: 180 ILAKRLRELSFLNNGVRIRLEDERTGKEDD-------FSGAGGVMGFVQFINASKKVLHP 232

Query: 286 EIFTGKTEKKGT-------HRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVA 337
             F     +              VE A+ W +  N  +  + N I   +GGTH +GLR A
Sbjct: 233 NAFHATGSRPAETYGGIPGTEIGVEVAMQWNDGFNESVLCFTNNIPQRDGGTHLTGLRAA 292

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           +TR I KY E  +   K  + +  DD+      +LSV + EP+F+ QTK KLVS + +  
Sbjct: 293 MTRVIGKYIEQNELAKKAKVEVSGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAP 352

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLA 454
           VE+ +      YL + P +A  L   ++E +  R   RK RE+ R+   +  + LPGKLA
Sbjct: 353 VEDIVAKALTDYLEERPNDAKILCGKIVEAARAREAARKAREMTRRKGVLDGMGLPGKLA 412

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAK 479
           DC +     +E++IVEGDSAGGSAK
Sbjct: 413 DCQEKDPALSEIYIVEGDSAGGSAK 437


>gi|68138551|gb|AAY85983.1| GyrB [Burkholderia cepacia]
          Length = 633

 Score =  293 bits (750), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 169/470 (35%), Positives = 252/470 (53%), Gaps = 29/470 (6%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKVRNKR 203
           GVG+S VNALS  L +TV R       +F RG+             +SP+       N R
Sbjct: 2   GVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLEVVDGVEVSPMLVTGDTEN-R 60

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E         F
Sbjct: 61  GTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD-------F 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            F GG+K +++   + ++ +   +F    EK G     VE A+ W +     +  + N I
Sbjct: 113 AFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGV---GVEVAMQWNDSYNENVLCFTNNI 169

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + EP+F+
Sbjct: 170 PQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFS 229

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
            QTK KLVS + +  VE  +    + +L++ PI+A  +   ++E +  R   RK RE+ R
Sbjct: 230 SQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTR 289

Query: 441 KTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+LNV
Sbjct: 290 RKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 349

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTF 558
             A  +K+ +++QI+ LV ALGC    +    + LRY ++IIMTDADVDGAHI +LLLTF
Sbjct: 350 EKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTF 409

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
            Y++M D+IE+ ++++  PPL++I  G    Y  D+      +      G
Sbjct: 410 LYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQG 459


>gi|302024210|ref|ZP_07249421.1| DNA gyrase subunit B [Streptococcus suis 05HAS68]
          Length = 320

 Score =  293 bits (750), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 130/322 (40%), Positives = 190/322 (59%), Gaps = 11/322 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           Q  +  YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I
Sbjct: 9   QEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFADKI 68

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           EV ++ +  +TV+DNGRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGV
Sbjct: 69  EVYIEPDNSITVIDNGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS +L V V +   ++ Q++ RG  ++ LE   +  ++ GT + F PDP+IF 
Sbjct: 128 GSSVVNALSTQLDVHVYKNGQVYFQEYKRGEVVADLEVVGET-DRSGTTVHFTPDPEIFT 186

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   FD A+L K  Q  A+L+  +    +  +E  E+        +++ GG+ +Y++   
Sbjct: 187 ETTEFDFAKLNKRIQELAFLNRGLNLSITDKREGVEQTKE-----YHYEGGIASYVEYLN 241

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRV 336
           EN+ +I       + E       TVE A+ +     E   S+ N I T EGGTHE G R 
Sbjct: 242 ENKDVIFETPIYTEGEMDDI---TVEVAMQYTTSYHENVVSFANNIHTHEGGTHEQGFRT 298

Query: 337 ALTRGIKKYAELTQNKRAISII 358
           ALTR I  YA+  +  +     
Sbjct: 299 ALTRVINDYAKKNKILKENEDN 320


>gi|117571421|gb|ABK40095.1| Rep/GyrB/AD fusion protein [Inducible protein expression vector
           pReg Neo]
          Length = 557

 Score =  292 bits (748), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 95/249 (38%), Positives = 144/249 (57%), Gaps = 10/249 (4%)

Query: 23  LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEV 81
             K        A      S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV
Sbjct: 116 SPKLRTFTKGDAERWVDISNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEV 175

Query: 82  IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141
           +DNA+DE +AG+   I V++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGG
Sbjct: 176 VDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGG 234

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL    +   
Sbjct: 235 KFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK 294

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             GT + F P  + F +   F+   L K  +  ++L+  V       ++  E       +
Sbjct: 295 -TGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------D 346

Query: 262 EFYFPGGLK 270
            F++ GG  
Sbjct: 347 HFHYEGGPC 355


>gi|73810192|gb|AAZ86069.1| DNA gyrase subunit B [Burkholderia stabilis]
          Length = 632

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 168/469 (35%), Positives = 248/469 (52%), Gaps = 27/469 (5%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK-----------EKVRNKRG 204
           GVG+S VNALS  L +TV R       +F RGI    + +                  RG
Sbjct: 1   GVGVSCVNALSSWLRLTVRRGGKKRFMEFHRGIAQDRVLEMVDGVEVSPMLVTGDTENRG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F  DP IFG    +    L K  +  ++L+  V+   +  +   E         F 
Sbjct: 61  TEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD-------FA 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           F GG+K +++   + ++ +   IF    EK G     VE A+ W +     +  + N I 
Sbjct: 113 FAGGVKGFVEYINKTKTNLHPTIFFATGEKDGV---GVEVAMQWNDSYNENVLCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + EP+F+ 
Sbjct: 170 QRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK KLVS + +  VE  +    + +L++ PI+A  +   ++E +  R   RK RE+ R+
Sbjct: 230 QTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTRR 289

Query: 442 TA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
              +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+LNV 
Sbjct: 290 KGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFF 559
            A  +K+ +++QI+ LV ALGC         + LRY ++IIMTDADVDGAHI +LLLTF 
Sbjct: 350 KARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFL 409

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           Y++M D+IE+ ++++  PPL++I  G    Y  D+      +      G
Sbjct: 410 YRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQG 458


>gi|19909729|dbj|BAB87060.1| DNA gyrase subunit B [Microcystis wesenbergii NIES-104]
          Length = 381

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 143/386 (37%), Positives = 211/386 (54%), Gaps = 10/386 (2%)

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           HHL  EV+DN++DE +AGY   IEV +  +G ++V D+GRGIP + HP    KS LE +L
Sbjct: 1   HHLVYEVVDNSIDEALAGYCTHIEVDIKADGSVSVTDDGRGIPTDVHP-TTGKSALETVL 59

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKF +  Y++SGGLHGVGISVVNALS  + VTV R + + +Q++ RGIP++ L 
Sbjct: 60  TILHAGGKFGSGGYKVSGGLHGVGISVVNALSAWVDVTVWRDHKVHTQRYERGIPVTELV 119

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
                 +K GTR+ F PD +IF     FD + L    +  AYL+  VK  +S  +     
Sbjct: 120 SSPSEGDKTGTRVNFLPDTEIFSQGIEFDYSTLSGRLRELAYLNAGVKITFSDYR----- 174

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE 314
              P  E + + GG+K Y+      +  +  +I     EK G     V +       +  
Sbjct: 175 PEEPHIEIYCYEGGIKEYVAYMCREKETLHKDIIYVSGEKNGI-NIEVAFQWCIDAYSDN 233

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSV 372
           I  + N I T +GGTH  GL+  LTR +   A      +    ++  +++      ++SV
Sbjct: 234 ILGFANNIRTIDGGTHLEGLKAVLTRTLNNVARKRNKIKENEPNLAGENVREGLTAVISV 293

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE-ERLR 431
            + EPEF GQTKTKL + + +  V++ + +  + YL QNP  A  ++E  ++  +     
Sbjct: 294 KVPEPEFEGQTKTKLGNTEVRGIVDSLVGETLNEYLEQNPQVADTIIEKAVQAYKAAEAA 353

Query: 432 RRKQREVNRKTAIRKLRLPGKLADCS 457
           RR +  V RK+ +    LPGKLADCS
Sbjct: 354 RRARDLVRRKSVLESSPLPGKLADCS 379


>gi|75758774|ref|ZP_00738889.1| DNA gyrase subunit B [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|228904158|ref|ZP_04068253.1| DNA gyrase subunit B [Bacillus thuringiensis IBL 4222]
 gi|74493784|gb|EAO56885.1| DNA gyrase subunit B [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|228855243|gb|EEM99807.1| DNA gyrase subunit B [Bacillus thuringiensis IBL 4222]
          Length = 726

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 140/694 (20%), Positives = 267/694 (38%), Gaps = 77/694 (11%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S NY  +SI  LEG E VR RP   +G +  +   H  +E++ N++DE  AG+ + ++++
Sbjct: 5   SQNYGNNSIDSLEGAERVRRRPAAVLGSSGIEGARHGVTEIVGNSVDEGTAGFGSKLDIN 64

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD---------------- 144
              +G +++ D GRG+P+  + +    S   ++   ++AGGK+                 
Sbjct: 65  YFKDGSISIRDYGRGVPMG-YNENKGISNWFLVFNEMYAGGKYKDYQEELRAIKDWSTFN 123

Query: 145 --NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
             +  Y  S GL+G+G +     S+               +F  G P+         ++ 
Sbjct: 124 PTDYNYLFSIGLNGLGAASTQYTSEFFEAISITDGIATKMEFRGGYPIL--------KDA 175

Query: 203 RGTRITFRPDPKIFGDKA-----GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
            G  +      +   ++       + A       ++  Y+  +       D +I   +  
Sbjct: 176 NGNEVHAIIGEERLLEEHGIVLKEYVAETYETEEENGTYIHWKPDIRVFSDVDITLGWIK 235

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGK-----------TEKKGTHRGTVEWAI 306
              E   +  GL   L  +  +                        E   +     +   
Sbjct: 236 DVCESVAYISGLDVNLYDEATDTMHEYQSGTISDLNLILNEKNLVNEDSPSVYEDNDITH 295

Query: 307 AWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIK---------------KYAELTQN 351
              ++N E   Y          T E G  V     IK                +     N
Sbjct: 296 GNVKQNNENFIYVFKADVSVVRTREKGKTVCFHNAIKMKGGAQYRAVDSAVADFVIGLGN 355

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
            + + ++  D       ++  +     + GQTK ++      R ++  +    +    + 
Sbjct: 356 TKGVKVVERDFEGKLGVVVKSYSNVASYKGQTKDEVDDNFIYRDLKTIIYRLINTEYHKG 415

Query: 412 PIEATKLLEWVIERSEER-----LRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
             +  + ++ V+E +E R       +  +         +            + I   +EL
Sbjct: 416 NKDIIEFVDKVLEEAELRITLQEQAKMLREVKKTSRTRKLPEKFLPSKLFKEKIVKKSEL 475

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-- 524
           +IVEGDSA  S K AR+   QA+  +RGK+ N   A  +K+  +++I D+   LG     
Sbjct: 476 WIVEGDSAKTSVKNARDPLFQAIYAVRGKVTNALKASFKKLMESEEIRDIFSLLGTGMDV 535

Query: 525 ----RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
                +++  +  R+EK+II TDAD DG  I  LL   F+    ++I++  L++   P F
Sbjct: 536 ELLDDNEFDIDACRFEKIIIGTDADEDGYQIRVLLFVVFWVLAPEIIKRGMLYIGETPKF 595

Query: 581 RIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
            I     + VYA +E  K    E  K++    +++ R+KGLGE+ A  L  T +    R 
Sbjct: 596 GIKLSNGEMVYAINEVDKA---EREKEYAGQIVKVERYKGLGEVNADVLGFTTLAPETRN 652

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKA-DERFK 672
           L++++++   + L    + +  L G     +R +
Sbjct: 653 LIQIKLDPADHILS---EFVETLFGKDPYKKRKE 683


>gi|212645845|ref|NP_498849.3| hypothetical protein R05D3.1 [Caenorhabditis elegans]
 gi|218512148|sp|P34534|TOP2M_CAEEL RecName: Full=Putative DNA topoisomerase 2, mitochondrial;
           Short=DNA topoisomerase II; Flags: Precursor
          Length = 1054

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 117/599 (19%), Positives = 218/599 (36%), Gaps = 43/599 (7%)

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L     ++V +NG G+PVE HP         ++   L     +D+S  +  GG +G G  
Sbjct: 9   LRETARISVWNNGSGLPVEIHP-TEGIYVPTLVFGNLFTSSNYDDSEIKTVGGRNGYGAK 67

Query: 161 VVNALSDELHVTVA--RQNTIFSQKFSRGIPLSPLEKKEKVRNKR---GTRITFRPDPKI 215
           + N  S E  V     R    F QK+   +      +  ++ ++     T++ F PD + 
Sbjct: 68  LCNIFSKEFIVETVDTRIKRRFRQKWYDNMKKCNEAEVVEILDETVKDYTKVEFVPDLER 127

Query: 216 FGDKA--GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           F            + +     A    R    +   ++          + F     L    
Sbjct: 128 FQIDKLSDDVIDLIGRRVFEVAATLPRDVDVYLNGQKCDVDGFEDYVKMFNDSSSLL--- 184

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESG 333
                     +     G  ++      +           P+I S+ N I T++GG+H   
Sbjct: 185 ------FLHPTPRWHVGVAKRNNFFGESHVVL-------PKIVSFVNNINTEKGGSHVDY 231

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
           +   +   IK   +        S+    +  +    ++  I  P F  QTK  L +    
Sbjct: 232 VMDKIVNIIKPIVDSKLGDPTKSVKPAVIKNNLSIFINCLIENPSFESQTKETLTTKAKN 291

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
                           +       ++E V+   +++L     + V+  +    ++L    
Sbjct: 292 FGSIFECDAKKTAEWAEQSGLIEDIVEEVLNMKKKKLP---GKRVSVSSVRDIVKLEDAE 348

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNN 510
                  A    L + EGDSA   A        R    V PL+GK+LNV++    +   N
Sbjct: 349 WAGITGTAEKCTLILTEGDSAKALALAGLEVLGRETYGVFPLKGKLLNVSNLDDARASKN 408

Query: 511 QQIMDLVQALGCRTRSQY--REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           ++I +L++ LG +         E LRY +++I+ D D DG+HI  L++ F ++    L+ 
Sbjct: 409 EEISNLLRILGLKFEDSNSITRESLRYGRLLILADQDEDGSHIKGLIVNFIHKFWPSLVH 468

Query: 569 -QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
               +     PL +  +G K          +K  +       GK +I  +KGLG   +++
Sbjct: 469 TDGFIQSFRTPLLKAKKGDKVRSFFSMNEYRKWAD---VEEGGKWKIKYYKGLGTSTSNE 525

Query: 628 LKETAMDANKRTLLRVEINK-DLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            +E   D +  T   V             + + ++    K+DER ++I+   + I +  
Sbjct: 526 AREYFSDLDHHT---VNFKYTGTTDDDAIRMAFDR---DKSDERKEWIRRSENEITNED 578


>gi|228930728|ref|ZP_04093706.1| DNA gyrase subunit B [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228828975|gb|EEM74634.1| DNA gyrase subunit B [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 723

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 140/694 (20%), Positives = 267/694 (38%), Gaps = 77/694 (11%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S NY  +SI  LEG E VR RP   +G +  +   H  +E++ N++DE  AG+ + ++++
Sbjct: 2   SQNYGNNSIDSLEGAERVRRRPAAVLGSSGIEGARHGVTEIVGNSVDEGTAGFGSKLDIN 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD---------------- 144
              +G +++ D GRG+P+  + +    S   ++   ++AGGK+                 
Sbjct: 62  YFKDGSISIRDYGRGVPMG-YNENKGISNWFLVFNEMYAGGKYKDYQEELRAIKDWSTFN 120

Query: 145 --NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
             +  Y  S GL+G+G +     S+               +F  G P+         ++ 
Sbjct: 121 PTDYNYLFSIGLNGLGAASTQYTSEFFEAISITDGIATKMEFRGGYPIL--------KDA 172

Query: 203 RGTRITFRPDPKIFGDKA-----GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
            G  +      +   ++       + A       ++  Y+  +       D +I   +  
Sbjct: 173 NGNEVHAIIGEERLLEEHGIVLKEYVAETYETEEENGTYIHWKPDIRVFSDVDITLGWIK 232

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGK-----------TEKKGTHRGTVEWAI 306
              E   +  GL   L  +  +                        E   +     +   
Sbjct: 233 DVCESVAYISGLDVNLYDEATDTMHEYQSGTISDLNLILNEKNLVNEDSPSVYEDNDITH 292

Query: 307 AWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIK---------------KYAELTQN 351
              ++N E   Y          T E G  V     IK                +     N
Sbjct: 293 GNVKQNNENFIYVFKADVSVVRTREKGKTVCFHNAIKMKGGAQYRAVDSAVADFVIGLGN 352

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
            + + ++  D       ++  +     + GQTK ++      R ++  +    +    + 
Sbjct: 353 TKGVKVVERDFEGKLGVVVKSYSNVASYKGQTKDEVDDNFIYRDLKTIIYRLINTEYHKG 412

Query: 412 PIEATKLLEWVIERSEER-----LRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
             +  + ++ V+E +E R       +  +         +            + I   +EL
Sbjct: 413 NKDIIEFVDKVLEEAELRITLQEQAKMLREVKKTSRTRKLPEKFLPSKLFKEKIVKKSEL 472

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-- 524
           +IVEGDSA  S K AR+   QA+  +RGK+ N   A  +K+  +++I D+   LG     
Sbjct: 473 WIVEGDSAKTSVKNARDPLFQAIYAVRGKVTNALKASFKKLMESEEIRDIFSLLGTGMDV 532

Query: 525 ----RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580
                +++  +  R+EK+II TDAD DG  I  LL   F+    ++I++  L++   P F
Sbjct: 533 ELLDDNEFDIDACRFEKIIIGTDADEDGYQIRVLLFVVFWVLAPEIIKRGMLYIGETPKF 592

Query: 581 RIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
            I     + VYA +E  K    E  K++    +++ R+KGLGE+ A  L  T +    R 
Sbjct: 593 GIKLSNGEMVYAINEVDKA---EREKEYAGQIVKVERYKGLGEVNADVLGFTTLAPETRN 649

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKA-DERFK 672
           L++++++   + L    + +  L G     +R +
Sbjct: 650 LIQIKLDPADHILS---EFVETLFGKDPYKKRKE 680


>gi|310781043|gb|ADP23997.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 400

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 156/412 (37%), Positives = 231/412 (56%), Gaps = 17/412 (4%)

Query: 72  KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLE 131
           + LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E
Sbjct: 1   RGLHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVE 59

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           + LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P +
Sbjct: 60  VALTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKT 119

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
            LE   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++ 
Sbjct: 120 DLEVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDG 177

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
            E       E F + GG+ ++++    N+ ++  E    + +        VE  + + + 
Sbjct: 178 KE-------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNDS 227

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVG 368
               I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      
Sbjct: 228 YNENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTA 287

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           I+SV ++ P+F GQTKTKL + + +  VEN + D    +L +NP  A  ++E   + +  
Sbjct: 288 IVSVKLKNPQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARA 347

Query: 429 RLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           R   RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSAK
Sbjct: 348 REAARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAK 399


>gi|330971531|gb|EGH71597.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 353

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 126/359 (35%), Positives = 204/359 (56%), Gaps = 10/359 (2%)

Query: 329 THESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           TH +GLR  L   ++++ E      R + +  +D+      +LS+ ++EP+F+GQTK +L
Sbjct: 1   THVNGLRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERL 60

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL 447
            S +A   V   ++D F  +L  +     +L +  I  +  RL+    ++V RK   +  
Sbjct: 61  SSREAAAFVSGVVKDAFSLWLNTHSELGLQLADLAINNAGRRLK--ASKKVERKRITQGP 118

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC+      +ELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN       ++
Sbjct: 119 ALPGKLADCAGQDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEV 178

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             +Q++ ++  A+G    +      LRY K+ I+ DAD DG HIA+LL   F Q    L+
Sbjct: 179 LASQEVHNIAVAIGVDPGAADI-SQLRYGKICILADADSDGLHIATLLCALFVQHFRPLV 237

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLAS 626
           +  H+++  PPL+RI  G +  YA DE  +  IL+    +  +GK +++RFKGLGEM   
Sbjct: 238 DAGHVYVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPP 297

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDV 684
           QL+ET MD N R L+++ ++        T + ++ L+  K A +R  +++ + +  + +
Sbjct: 298 QLRETTMDPNTRRLVQLTLDD----FAATSEMMDMLLAKKRAGDRKSWLESKGNLAEVL 352


>gi|294786989|ref|ZP_06752243.1| DNA gyrase subunit B [Parascardovia denticolens F0305]
 gi|315226630|ref|ZP_07868418.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Parascardovia
           denticolens DSM 10105]
 gi|294485822|gb|EFG33456.1| DNA gyrase subunit B [Parascardovia denticolens F0305]
 gi|315120762|gb|EFT83894.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Parascardovia
           denticolens DSM 10105]
          Length = 787

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 143/464 (30%), Positives = 216/464 (46%), Gaps = 38/464 (8%)

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT--------------- 297
           EK+  P  +EF+  GG+  ++        +       G +  +                 
Sbjct: 322 EKHRHPRVQEFFHQGGVVDFVDFLSSGEPVSDIWHIEGDSTYQEETQQVDSNGDLHATMV 381

Query: 298 -HRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI 355
                V+ A+ W  +   +  S+ N + T  GG H  G   ++T+ I+K  E    K  +
Sbjct: 382 QRDCHVDIALRWINDYETVLRSFVNVVETPGGGMHVDGFLNSITKNIRKTVEANARKLKV 441

Query: 356 SIISDDLM-------ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
           ++    +           V +++V I EP+F GQTK  L +   +  V       F   +
Sbjct: 442 NLKDPHMKIERDDVLAGIVAVVTVRIAEPQFQGQTKDVLGTAQVKPIVTRICDKQFGEMI 501

Query: 409 VQNPIEATKLLEWVIER----SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHG 463
             +     +    V+E+       R++ RK +E   RK A+    +P KL+DC       
Sbjct: 502 TGSKRGFKEQSGRVLEKIAGEMHARVQARKTKEVTRRKNALESASMPAKLSDCQPGNDDI 561

Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523
            ELFIVEGDSA G+AK ARN   QA+LP+RGKILNV  A   +I  N++   ++Q +G  
Sbjct: 562 AELFIVEGDSALGTAKAARNSMFQALLPIRGKILNVQKASVAQILANKECSAIIQVVGAG 621

Query: 524 TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI- 582
           + + +     RY+K+I+MTDADVDGAHI +LLLT FY+ M  L+E  H++   PPL RI 
Sbjct: 622 SGATFDLGQARYDKIIMMTDADVDGAHIRTLLLTLFYRYMRPLVEAGHVYAAVPPLHRIA 681

Query: 583 ---TQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKR 638
                  + VY + EE     L + +K G     +I R+KGLGEM A QL +T MD   R
Sbjct: 682 LAGKHKGEFVYTYSEEELSSRLTQLEKQGIDYNEDIQRYKGLGEMDADQLADTTMDPRTR 741

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
                     L+  +   +    LMG +   R +FI + A   D
Sbjct: 742 L----LRRIRLDDARHASEIFELLMGDEVPPRRQFIVDNADDFD 781



 Score =  263 bits (671), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 95/254 (37%), Positives = 132/254 (51%), Gaps = 26/254 (10%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86
                +   +  +A  +Y+A+S+ +LEGL+ VR RPGMYIG TD + L H   E+IDN++
Sbjct: 2   ATKKKNKTESQAAAGGDYNAASLSVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNSV 61

Query: 87  DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146
           DE +AG  N I V+L  +G ++V DNGRGIPV+  PK    S +E++LT LHAGGKF NS
Sbjct: 62  DEALAGACNHIIVTLHKDGSISVADNGRGIPVDVEPK-TGLSGVEVVLTKLHAGGKFGNS 120

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG------------------- 187
            Y   GGLHGVG SVVNALS  L V V R    +  +F +G                   
Sbjct: 121 AYNAVGGLHGVGSSVVNALSSRLGVEVDRDGKTYRMEFHQGHPGTYDDPDPQNPSPESPF 180

Query: 188 ------IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241
                  P       +    K GTRI +  DP+IF   A F+  +L+   +  ++L   +
Sbjct: 181 TRTRKNKPTELRMVGKYSGKKTGTRIRYWADPEIFNSTAVFNYEQLIDRVRQTSFLVPGL 240

Query: 242 KTCWSCDKEIAEKY 255
           +     +K     Y
Sbjct: 241 RIEVIDEKVDDNTY 254


>gi|145642081|ref|ZP_01797652.1| DNA topoisomerase IV subunit B [Haemophilus influenzae R3021]
 gi|145273261|gb|EDK13136.1| DNA topoisomerase IV subunit B [Haemophilus influenzae 22.4-21]
          Length = 430

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 164/435 (37%), Positives = 232/435 (53%), Gaps = 21/435 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + NY A  I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE +AG+A  IEV 
Sbjct: 2   TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRPNHLAQEVIDNSVDEALAGFATKIEVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  + V DNGRG+PV+ HP     S +E+ILT LHAGGKF N  YE +GGLHGVGIS
Sbjct: 59  LHPDQSIEVTDNGRGMPVDIHP-TEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS+ + + V R   ++   F  G  +  LE      R   GT + F+P+PK F + 
Sbjct: 118 VVNALSERVDIQVKRNGEVYKIAFENGSKVEELEVIGTCGRRTTGTSVHFKPNPKYFDN- 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
           A F  +RL  + ++KA L   ++  +              ++ + +  GL  YL   +  
Sbjct: 177 AKFSVSRLRHLLRAKAVLCSGLEIKFLDK-------VNNTQDIWLYEDGLSDYLIEAVNG 229

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337
              +  + F G+ +        V WA+ W  E  E    SY N I T +GGTH +GLR  
Sbjct: 230 FETLPEKPFVGEFKG---TNEAVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQG 286

Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           L   I+++ E      R + + +DD+      ILS+ +++ +FAGQTK +L S  +   V
Sbjct: 287 LLDAIREFCEFRNLLPRGVKLTADDIWERCSYILSLKMQDAQFAGQTKERLSSRQSAVFV 346

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
              L+D F  +L QN  +A KL E  I  ++ RLR    ++V RK  +    LPGKLADC
Sbjct: 347 SGVLKDAFSLWLNQNVQDAEKLAEIAISSAQRRLR--AAKKVVRKKLVSGPALPGKLADC 404

Query: 457 SQNIAHGTELFIVEG 471
                  TELF    
Sbjct: 405 GSQDLEKTELFFSGR 419


>gi|226327149|ref|ZP_03802667.1| hypothetical protein PROPEN_01014 [Proteus penneri ATCC 35198]
 gi|225204367|gb|EEG86721.1| hypothetical protein PROPEN_01014 [Proteus penneri ATCC 35198]
          Length = 387

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 146/394 (37%), Positives = 208/394 (52%), Gaps = 19/394 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +Y+A  I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A+ ++V L
Sbjct: 4   SSYNAKDIEVLNGLEPVRRRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHASKVDVIL 60

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
             +  + V+DNGRG+PV+ HP+    S +E+IL  LHAGGKF N  Y+ SGGLHGVGISV
Sbjct: 61  YADQSIEVIDNGRGMPVDIHPEL-KVSAIELILAHLHAGGKFSNKNYQFSGGLHGVGISV 119

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS  + VTV R   I+   F  G  +  L +     +   GT + F PD   F    
Sbjct: 120 VNALSKRIEVTVRRDGKIYQIAFENGDKVEELHEIGTCAKRDTGTSVHFWPDGAYFDV-P 178

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F +  L  + ++KA L   V   +              +E + +  GL  YL   +   
Sbjct: 179 RFSSKSLSHVLKAKAVLCPGVNVSFVDK-------VNNTQENWCYADGLTDYLSEAVAEF 231

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +  E FTGK E        VEW++ W  E  +    SY N I T +GGTH +GLR  +
Sbjct: 232 VRLPEEPFTGKFEGDNE---AVEWSMLWLPEGGDLLTESYVNLIPTVQGGTHVNGLRQGV 288

Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
              ++++ E      R + + +DD       +LSV +++P+FAGQTK +L S      V 
Sbjct: 289 LDAMREFCEFRNLLPRGLKLTADDTWERCAYVLSVKMQDPQFAGQTKERLSSRQTSAFVA 348

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           NA+++ F  +L QN      L E  I  ++ R+R
Sbjct: 349 NAVKNAFSLWLNQNVQVGELLAEMAISSAQRRMR 382


>gi|68138816|gb|AAY86019.1| GyrB [Burkholderia cenocepacia]
          Length = 631

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 167/469 (35%), Positives = 250/469 (53%), Gaps = 29/469 (6%)

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKVRNKRG 204
           VG+S VNALS  L +TV R       +F RG+             +SP+       N RG
Sbjct: 1   VGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVFEVVDGVEVSPMLVTGDTEN-RG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F  DP IFG    +    L K  +  ++L+  V+   +  +   E         F 
Sbjct: 60  TEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD-------FA 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           F GG+K +++   + ++ +   +F    EK       VE A+ W +     +  + N I 
Sbjct: 112 FAGGVKGFVEYINKTKTNLHPTVFFATGEKDNV---GVEVAMQWNDSYNENVLCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + EP+F+ 
Sbjct: 169 QRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK KLVS + +  VE  +    + +L++ PI+A  +   ++E +  R   RK RE+ R+
Sbjct: 229 QTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTRR 288

Query: 442 TA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
              +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+LNV 
Sbjct: 289 KGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFF 559
            A  +K+ +++QI+ LV ALGC    +    + LRY ++IIMTDADVDGAHI +LLLTF 
Sbjct: 349 KARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFL 408

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           Y++M D+IE+ ++++  PPL++I  G    Y  D+      +      G
Sbjct: 409 YRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDAELNAHMLRLALQG 457


>gi|68138807|gb|AAY86018.1| GyrB [Burkholderia cenocepacia]
          Length = 631

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 167/469 (35%), Positives = 250/469 (53%), Gaps = 29/469 (6%)

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKVRNKRG 204
           VG+S VNALS  L +TV R       +F RG+             +SP+       N RG
Sbjct: 1   VGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVFEVVDGVEVSPMLVTGDTEN-RG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F  DP IFG    +    L K  +  ++L+  V+   +  +   E         F 
Sbjct: 60  TEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD-------FA 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           F GG+K +++   + ++ +   +F    EK       VE A+ W +     +  + N I 
Sbjct: 112 FAGGVKGFVEYINKTKTNLHPTVFFATGEKDNV---GVEVAMQWNDSYNENVLCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + EP+F+ 
Sbjct: 169 QRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK KLVS + +  VE  +    + +L++ PI+A  +   ++E +  R   RK RE+ R+
Sbjct: 229 QTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTRR 288

Query: 442 TA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
              +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+LNV 
Sbjct: 289 KGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFF 559
            A  +K+ +++QI+ LV ALGC    +    + LRY ++IIMTDADVDGAHI +LLLTF 
Sbjct: 349 KARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFL 408

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           Y++M D+IE+ ++++  PPL++I  G    Y  D+      +      G
Sbjct: 409 YRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDAELNAHMLRLALQG 457


>gi|310780997|gb|ADP23974.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 397

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 152/410 (37%), Positives = 227/410 (55%), Gaps = 17/410 (4%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
             + LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  
Sbjct: 1   GSRGLHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPA 59

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
           +E+ LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P
Sbjct: 60  VEVALTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVP 119

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            + LE   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      ++
Sbjct: 120 KTDLEVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDER 177

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
           +  E       E F + GG+ ++++    N+ ++  E    + +        VE  + + 
Sbjct: 178 DGKE-------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYN 227

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISA 366
           +     I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+    
Sbjct: 228 DSYNENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGL 287

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             I+SV ++ P+F GQTKTKL + + +  VEN + D    +L +NP  A  ++E   + +
Sbjct: 288 TAIVSVKLKNPQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAA 347

Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
             R   RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAG
Sbjct: 348 RAREAARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAG 397


>gi|301166552|emb|CBW26128.1| putative DNA gyrase subunit B [Bacteriovorax marinus SJ]
          Length = 715

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 149/613 (24%), Positives = 261/613 (42%), Gaps = 42/613 (6%)

Query: 76  HLFSEVIDNAMDEVIAGYANLIEVSLDGNG-FLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
               E++DN +DE   G+   I   L  +G  + V DNG G P+E  P+         + 
Sbjct: 67  KAIEEILDNCIDEYYRGHVTEIHCELSEDGKSVMVEDNGIGFPIEKVPQ---------VY 117

Query: 135 TTLHAGGKFDNSTYEISG------GLHGVGISVVNALSDELHVTVARQN--TIFSQKFSR 186
           +    G KF +   +  G      G +G+G +     SDE  V V   N     +  F  
Sbjct: 118 SEFRTGSKFKDEETDEKGFLHRTLGQNGLGAAATCLTSDEFKVRVRHYNSKKEQTYTFID 177

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G       K +  +   G R+  +   +++ +    +   L K     AY +  +   ++
Sbjct: 178 GALKVKKTKPKPFKGHSGVRVELKLSKEVYKNDVVDE-ELLRKRIIDLAYNNPGLTFYFN 236

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
            +K   +K  +   +       +      +    + I     T   + KG    +V   +
Sbjct: 237 KEKYHYKKGLLELAQR------VDPDTAQEFGASAYIYEAKNTKGKKVKGKIDLSVALNL 290

Query: 307 AWC-EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
           +   EE  +  S+ N+  T +GG H   +R      IK        K  ++++ +D++  
Sbjct: 291 SKKSEEREKFISFVNSTPTFDGGFHHDRVRRLFVNSIKDKLARNAKKEKLTLVDNDILTG 350

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDA-QRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
               + V +  P F  QTK KLV     ++ +E  +    D +L +N     + LE V+E
Sbjct: 351 ITFTIGVTMPNPRFESQTKRKLVRDTHLEKGIEELMNKNIDKFLRKN----KEYLEVVME 406

Query: 425 RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHG-TELFIVEGDSAGGSAKQARN 483
           R++ R R ++ ++ ++K   +K +   KL D ++        LFI EGDSA G  + AR+
Sbjct: 407 RAKSRNRFQELKDASKKARKQKKQRVEKLLDANERKKRELCTLFICEGDSAIGGLRSARD 466

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTD 543
           +  Q  + L+GK +NVA A    I NNQ+  D++ ++G     +     LRY KV+ + D
Sbjct: 467 KLYQGGIALKGKPMNVAQAAISDILNNQEFSDIMASIGLIIGVEADVSKLRYSKVVFLAD 526

Query: 544 ADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEE 603
           +DVDG HI +LL  FFYQ   +L +Q+ + +   PLF +     + Y    +  +   E 
Sbjct: 527 SDVDGGHINTLLTNFFYQFWPELFDQEAICIAKAPLFEVITDKGTKYIETPDELETFRET 586

Query: 604 FKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLM 663
            K   K   EI R KGLGEM   +  +  +     T++        + +   ++ +N   
Sbjct: 587 TKLKIK---EIQRNKGLGEMSP-EAWKHVLSRESFTII------SASDVSRAKEMLNVCF 636

Query: 664 GTKADERFKFIQE 676
           G     R + + +
Sbjct: 637 GKDTSLRKELLMD 649


>gi|19909727|dbj|BAB87059.1| DNA gyrase subunit B [Microcystis viridis NIES-102]
          Length = 381

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 144/386 (37%), Positives = 210/386 (54%), Gaps = 10/386 (2%)

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           HHL  EV+DN++DE +AGY   IEV +  +G ++V D+GRGIP + HP    KS LE +L
Sbjct: 1   HHLVYEVVDNSIDEALAGYCTHIEVDIKADGSVSVTDDGRGIPTDVHP-TTGKSALETVL 59

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKF +  Y++SGGLHGVGISVVNALS  + VTV R + + +Q++ RGIP++ L 
Sbjct: 60  TILHAGGKFGSGGYKVSGGLHGVGISVVNALSAWVDVTVWRDHKVHTQRYERGIPVTELV 119

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
                  K GTR+ F PD +IF     FD + L    +  AYL+  VK  +S  +     
Sbjct: 120 SSPSQEEKTGTRVNFLPDTEIFSQGIEFDYSTLSGRLRELAYLNAGVKITFSDYR----- 174

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE 314
              P  E + + GG+K Y+      R  +  +I     EK G     V +       +  
Sbjct: 175 PEEPHIETYCYEGGIKEYVAYMCRERETLHRDIIYVSGEKNGI-NIEVAFQWCIDAYSDN 233

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSV 372
           I  + N I T +GGTH  GL+  LTR +   A      +    ++  +++      ++SV
Sbjct: 234 ILGFANNIRTIDGGTHLEGLKAVLTRTLNNVARKRNKIKENEPNLAGENVREGLTAVISV 293

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE-ERLR 431
            + EPEF GQTKTKL + + +  V++ + +  + YL QNP  A  ++E  ++  +     
Sbjct: 294 KVPEPEFEGQTKTKLGNTEVRGIVDSLVGETLNEYLEQNPQVADTIIEKAVQAYKAAEAA 353

Query: 432 RRKQREVNRKTAIRKLRLPGKLADCS 457
           RR +  V RK+ +    LPGKLADCS
Sbjct: 354 RRARDLVRRKSVLESSPLPGKLADCS 379


>gi|23978243|dbj|BAC21115.1| DNA gyrase B subunit [Pseudanabaena sp. PCC 7367]
          Length = 392

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 142/397 (35%), Positives = 219/397 (55%), Gaps = 11/397 (2%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T  K LHHL  EV+DN++DE + GY + I V L  +G + V DNGRGIP + HP+   KS
Sbjct: 1   TGPKGLHHLVYEVVDNSVDEALGGYCDTILVELLADGSVAVTDNGRGIPTDVHPR-TGKS 59

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
            LE ++T LHAGGKFD ++Y++SGGLHGVG+SVVNALS+ + V+V RQ  +  Q++ RGI
Sbjct: 60  ALETVMTVLHAGGKFDGNSYKVSGGLHGVGVSVVNALSEWVEVSVWRQGKLHQQRYERGI 119

Query: 189 PLSPLEKKE-KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247
           P+  LE    K + KRGT++ F PD  IF     F+   L+   +  AYL+  +K   + 
Sbjct: 120 PIGNLEVSTAKDKQKRGTKVCFMPDTMIFATGIEFEFDILVGRLRELAYLNAGLKIEIAD 179

Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307
            +   +K      E + + GG++ Y+     ++  +  EI   K E+    +  V     
Sbjct: 180 RRGETDKV-----ETYQYDGGIREYVSYMTRDKEALHPEIIYIKGERNDI-QIEVAMQWC 233

Query: 308 WCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMIS 365
               +  +  + N I T +GGTH  GL+  LTR I   A   +  +    ++  +++   
Sbjct: 234 IDSYSDNVFGFANNIRTVDGGTHLEGLKTVLTRTINSTARKLKKLKDSDSNLAGENVREG 293

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              ++SV + EPEF GQTKTKL + + + TV++ + +  + ++  NP  A+ ++E  ++ 
Sbjct: 294 LTAVISVKVPEPEFEGQTKTKLGNTEVRGTVDSFVGEVLNEFIEFNPQVASTIIEKALQS 353

Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIA 461
                  R+ RE V RK+ +    LPGKLADCS    
Sbjct: 354 YNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDP 390


>gi|311977868|ref|YP_003986988.1| DNA topoisomerase 2 [Acanthamoeba polyphaga mimivirus]
 gi|76363498|sp|Q5UQE6|TOP2_MIMIV RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|55417096|gb|AAV50746.1| topoisomerase II [Acanthamoeba polyphaga mimivirus]
 gi|308204860|gb|ADO18661.1| DNA topoisomerase 2 [Acanthamoeba polyphaga mimivirus]
          Length = 1263

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 135/653 (20%), Positives = 235/653 (35%), Gaps = 78/653 (11%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE--------------- 71
                      +S  + Y   ++      E +   P  YIG  +E               
Sbjct: 1   MSKTSKSNKNPKSIEEKYQKKNL-----HEHILHSPDTYIGSIEEKTCNMWIFNESAGED 55

Query: 72  ------------KALHHLFSEVIDNAMD-EVIAGYANLIEVSLD-GNGFLTVVDNGRGIP 117
                         L+ ++ EVI NA D        N+I+V +D   G ++V +NG GI 
Sbjct: 56  DAKIIFKEITYVPGLYKIYDEVIVNAADHNKRCQTCNIIKVDIDQKTGQISVWNNGDGID 115

Query: 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR-- 175
           V  H +  N     +I   L     +D +  +  GG +G G  + N  S E  +      
Sbjct: 116 VAIHKEH-NIWVPSMIFGELLTSTNYDKNEEKTVGGKNGFGAKLANIYSVEFTIETVDAN 174

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA--GFDAARLLKMTQS 233
           +   F Q+F+  +      K    +    T+ITF PD K FG K       A   K    
Sbjct: 175 KGKKFFQRFTNNMYDKEEPKISSFKKSSYTKITFIPDFKKFGLKCLDDDTLALFKKRVFD 234

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            A  +   K  ++   +   +    +    YFP G +  +                    
Sbjct: 235 LAMTT-NAKVYFND--KQIVQNNFKKYVGLYFPEGSQHKVVIDDTTHE------------ 279

Query: 294 KKGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK 352
                R  V       ++   +  S+ N+I T  GGTH   +   +  G+K    + +  
Sbjct: 280 -----RWKVGVIYDPTDQLEHQNISFVNSICTSRGGTHVEQVVGQIVNGLK--TAIVKKA 332

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
           + + I    +  + +  +   I  P+F  QTK  L    A    +  + + F   +++  
Sbjct: 333 KNVQIKPAMIKENLIFFVDATIVNPDFDTQTKEYLTKKAANFGSKFEVTEKFIKGVIKTG 392

Query: 413 IEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
           +        +I  ++ R      +   +     +               +   L + EGD
Sbjct: 393 VCD-----QIIANAKAREEANLSKTDGKGRGPVRYEKLYNAHKAGTKEGYKCTLILTEGD 447

Query: 473 SAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           SA   A    N   R    V PLRGK+LNV  A  +KI +N++I  + + +G      Y 
Sbjct: 448 SAKTFAMSGLNVIGRDYYGVFPLRGKLLNVRDASPKKIADNEEITAIKKIVGLEQGKVYD 507

Query: 530 EED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE-QKHLFLISPPLF----RIT 583
           +   LRY  ++I+ D DVDG HI  L++ F +     L++ +  +   + PL        
Sbjct: 508 DLKGLRYGSIMILADQDVDGYHIKGLIMNFIHCFWPSLVKYEGFIQSFATPLLKATKGKG 567

Query: 584 QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636
           +  + V     +  ++  +E   +      I  +KGLG    ++ +E   D N
Sbjct: 568 KTKQVVAFTSPQSFEEWKKE--NNDGKGWSIKYYKGLGTSDPAEAQECFADLN 618


>gi|239735447|dbj|BAH70490.1| gyrase B subunit [Cardinium endosymbiont of Tetranychus urticae red
           form B]
          Length = 462

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 179/468 (38%), Positives = 260/468 (55%), Gaps = 16/468 (3%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+S VNALS  L VTV R   I+ Q++ +GIP  P+++     + RGT + F PD
Sbjct: 1   GLHGVGVSCVNALSAHLAVTVYRNGKIYKQEYVQGIPQYPVKEVG-TTDLRGTTVHFTPD 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
             IF     ++   ++   Q  AYL+  +K      +E  E  G P  + F+  GGL  +
Sbjct: 60  SSIFTTTV-YNLHTIVNRLQELAYLNVGLKMQLEDRRERDE-AGNPFGQTFHSQGGLLEF 117

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           +     ++  I       + EK       V+ A+ +       + SY N I T EGG H 
Sbjct: 118 VAHLDSSKVSIMPAPILVEGEKNNV---VVQVAMTYNTGYSETVVSYVNNIHTIEGGIHV 174

Query: 332 SGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G R ALTR +K YA+ +    K  I II DD       ++SV + EP+F GQTKTKL +
Sbjct: 175 TGFRRALTRTLKSYADKSGLLEKAKIEIIGDDFREGLTAVISVKVAEPQFEGQTKTKLGN 234

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLR 448
            + Q  VE+ + +   +YL ++P EA  ++  VI      +  R+ +  V RK  +    
Sbjct: 235 AEVQGAVESCVGEVLHYYLEEHPKEAKLIINKVIVAAQARQAARKAREMVQRKNVLMSNS 294

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS+      ELF+VEGDSAGG+AK  RNR  QA+LPL+GKILNV  A   KI 
Sbjct: 295 LPGKLADCSERDPALCELFLVEGDSAGGTAKMGRNRRFQAILPLKGKILNVEKAQVYKIY 354

Query: 509 NNQQIMDLVQALGCR-----TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +N+Q+ +++ ALG              + LRY K++IMTDADVDG+HI +L+LTFF++ M
Sbjct: 355 DNEQVRNMITALGVTMGTDGNDQAIHLDKLRYHKIVIMTDADVDGSHIRTLILTFFFRYM 414

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK-KHGKG 610
            D+IE+ HL++ SPPL+ + +  +  Y   +  K+  + +F  K GK 
Sbjct: 415 RDIIEKGHLYIASPPLYLVKRDKEEQYCWTDSEKEASVTQFSLKDGKA 462


>gi|226294840|gb|EEH50260.1| DNA topoisomerase [Paracoccidioides brasiliensis Pb18]
          Length = 1760

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 122/593 (20%), Positives = 232/593 (39%), Gaps = 43/593 (7%)

Query: 108 TVVDNGRGIPVE---NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNA 164
           +   +G   P +    + K       E+I   L     +++   +++GG +G G  + N 
Sbjct: 285 SFRTDGVAAPTDSSERYQKKEKLYIPELIFGHLLTSSNYNDMQQKVTGGRNGYGAKLCNI 344

Query: 165 LSDELHVTVA--RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD-PKIFGDKAG 221
            S E  +  A  RQN  + Q ++  +      K    + +  T++TF PD  K   +   
Sbjct: 345 FSTEFTIETADSRQNKKYKQTWTNNMSKMGKAKITDCKGQDYTKVTFTPDFKKFGMEGVD 404

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
            D   L+K       ++G  K     +          +    Y     K   +   ++++
Sbjct: 405 DDFEALVKRR--VYDMAGTCKVIVKLNGSRIPVRNFKQYMAMYTNAIKKERGEEAAKDKT 462

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
            I  +                E   A  + + +  S+ N+I T  GG+H + +   +   
Sbjct: 463 EILLD----------NPDPRWEVGFAVSDGSFQQVSFVNSIATTSGGSHVNAVADQICNR 512

Query: 342 IKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
           + +     +NK   S+    +       ++  I  P F  QTK +L +  +Q   +  L 
Sbjct: 513 LAE-TVKKRNKTGASLKPAQIRNHIFVFVNSQIVNPAFTSQTKEQLTTKPSQFGSKIVLS 571

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIA 461
           + F   +++  +        ++  +E++  +  ++    + +                  
Sbjct: 572 EEFLKKVIKTQVMEN-----IMHFAEKKADQILKKSDGNRRSRMNNPKLTDANKAGTKEG 626

Query: 462 HGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
           H   L + EGDSA G A   R         V PLRGK+LNV  A  ++I  N +I ++  
Sbjct: 627 HHCTLILTEGDSAKGLAMAGRAIVGPDLFGVFPLRGKMLNVRDASVDQISKNAEIQNIKN 686

Query: 519 ALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK-HLFLIS 576
            LG + + +Y +   LRY  ++IMTD D DG+HI  LL+ F       L++    L    
Sbjct: 687 FLGLQHKKEYTDTKGLRYGHLMIMTDQDHDGSHIKGLLINFLQVAFPSLLKIPQFLIEFI 746

Query: 577 PPLFRITQGT-----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
            P+ ++ +G       S      +  +   +E   H +   E   +KGLG       +  
Sbjct: 747 TPIVKVWKGDPKNPIISKSFFTMQEYETW-KEIHGHDRR-WEKKYYKGLGTSTTEDAEIY 804

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE--RASFID 682
             D +K  L +  + +D N  +    + +K    KADER +++++    +F+D
Sbjct: 805 FQDLDKH-LKQFHVMQD-NEAQLIDLAFSK---KKADERKEWLRQFKPGTFLD 852


>gi|58761283|gb|AAW82356.1| DNA gyrase subunit B [Dehalococcoides sp. CBDB1]
          Length = 428

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 169/440 (38%), Positives = 251/440 (57%), Gaps = 17/440 (3%)

Query: 85  AMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144
           ++DE +AG  + I+V +  +G ++V DNGRGIPV+ H      S LE ++T LHAG KF 
Sbjct: 1   SVDEAMAGVCDRIKVIMFKDGSVSVEDNGRGIPVDIHS-TTKISALETVMTVLHAGAKFG 59

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
             TY++SGGLHGVG SVVNALS+   V V R   I+ Q + RG P +PLE+   V    G
Sbjct: 60  GKTYQVSGGLHGVGASVVNALSEWTTVKVRRNGKIYQQSYLRGKPSTPLEEVG-VSEGSG 118

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F  D +IF     +D   L    +  AYL+  ++     +K   E+        +Y
Sbjct: 119 TTTIFMADSQIFST-TEYDFETLTDRLREIAYLNKGLEVYIYDEKSDQERT-------YY 170

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTIL 323
           F GG+  +++    NR +   +      +   T    +E AI + +   +   ++ N + 
Sbjct: 171 FEGGITGFVRHLNRNREVRHRQPIYITKKSDSTI---LEVAIQYNDGYSDSTLTFANCVN 227

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T +GGTH +G R ALTR    YA  ++  +    +++ DD+    V I+SV + EP+F G
Sbjct: 228 TVDGGTHLTGFRSALTRAFNDYAHKSKFLKDTDPNLMGDDVREGIVAIVSVKLPEPQFEG 287

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTK KL +++ +  VE+A+ +    YL ++P +  ++LE  I  ++ R   RK R+ + R
Sbjct: 288 QTKGKLGNIEIKSFVESAVAEQLSLYLEEHPDDTKRILEKCITAAKAREAARKARDLIIR 347

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS+  A   ELF+VEGDSAGGSAKQ RNR  QA+LPLRGKILNV 
Sbjct: 348 KSALDTGTLPGKLADCSERDASLCELFLVEGDSAGGSAKQGRNRRFQAILPLRGKILNVE 407

Query: 501 SAGSEKIRNNQQIMDLVQAL 520
            A  +K+  +++I  ++ AL
Sbjct: 408 KASPDKMLAHEEIRAIITAL 427


>gi|239735445|dbj|BAH70489.1| gyrase B subunit [Cardinium endosymbiont of Tetranychus urticae red
           form A]
          Length = 462

 Score =  290 bits (742), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 179/468 (38%), Positives = 261/468 (55%), Gaps = 16/468 (3%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+S VNALS  L VTV R   I+ Q++++GIP  P+++     + RGT + F PD
Sbjct: 1   GLHGVGVSCVNALSAHLAVTVYRNGKIYKQEYAQGIPQYPVKEVG-TTDLRGTTVHFTPD 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
             IF     ++   ++   Q  AYL+  +K      +E  E  G P  + F+  GGL  +
Sbjct: 60  SSIFTTTV-YNLHTIVNRLQELAYLNVGLKMQLEDRRERDE-AGNPFGQTFHSQGGLLEF 117

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           +     ++  I       + EK       V+ A+ +       + SY N I T EGG H 
Sbjct: 118 VAHLDSSKVSIMPAPILVEGEKNNV---VVQVAMTYNTGYSETVVSYVNNIHTIEGGMHV 174

Query: 332 SGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G R ALTR +K YA+ +    K  I II DD       ++SV + EP+F GQTKTKL +
Sbjct: 175 TGFRRALTRTLKSYADKSGLLEKAKIEIIGDDFREGLTAVISVKVAEPQFEGQTKTKLGN 234

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLR 448
            + Q  VE+ + +   +YL ++P EA  ++  VI      +  R+ +  V RK  +    
Sbjct: 235 AEVQGAVESCVGEVLHYYLEEHPKEAKLIINKVIVAAQARQAARKAREMVQRKNVLMSNS 294

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS+      ELF+VEGDSAGG+AK  RNR  QA+LPL+GKILNV  A   KI 
Sbjct: 295 LPGKLADCSERDPALCELFLVEGDSAGGTAKMGRNRRFQAILPLKGKILNVEKAQVYKIY 354

Query: 509 NNQQIMDLVQALGCR-----TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +N+Q+ +++ ALG              + LRY K++IMTDADVDG+HI +L+LTFF++ M
Sbjct: 355 DNEQVRNMITALGVTMGTDGNDQAIHLDKLRYHKIVIMTDADVDGSHIRTLILTFFFRYM 414

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK-KHGKG 610
            D+IE+ HL++ SPPL+ + +  +  Y   +  K+  + +F  K GK 
Sbjct: 415 RDIIEKGHLYIASPPLYLVKRDKEEQYCWTDSEKEASVTQFSLKDGKA 462


>gi|310781011|gb|ADP23981.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781013|gb|ADP23982.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781015|gb|ADP23983.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781017|gb|ADP23984.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781023|gb|ADP23987.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 397

 Score =  290 bits (741), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 155/410 (37%), Positives = 229/410 (55%), Gaps = 17/410 (4%)

Query: 73  ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
            LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+
Sbjct: 1   GLHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEV 59

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
            LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + 
Sbjct: 60  ALTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTD 119

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
           LE   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  
Sbjct: 120 LEVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGK 177

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
           E       E F + GG+ ++++    N+ ++  E    + +        VE  + + +  
Sbjct: 178 E-------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNDSY 227

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369
              I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I
Sbjct: 228 NENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAI 287

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           +SV ++ P+F GQTKTKL + + +  VEN + D    +L +NP  A  ++E   + +  R
Sbjct: 288 VSVKLKNPQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAR 347

Query: 430 LRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
              RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSA
Sbjct: 348 EAARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSA 397


>gi|167077373|gb|ABZ10908.1| DNA gyrase subunit B [Burkholderia anthina]
          Length = 630

 Score =  290 bits (741), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 167/468 (35%), Positives = 251/468 (53%), Gaps = 29/468 (6%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKVRNKRGT 205
           G+S VNALS  L +TV R       +F RG+             +SP++      N RGT
Sbjct: 1   GVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLETVDGVEVSPMQVTGDTEN-RGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            + F  DP IFG    +    L K  +  ++L+  V+   +  +   E         F F
Sbjct: 60  EVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD-------FAF 111

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG+K +++   + ++ +   +F    EK G     VE A+ W +     +  + N I  
Sbjct: 112 AGGVKGFVEFINKTKTNLHPTVFFANGEKDGV---GVEVAMQWNDSYNENVLCFTNNIPQ 168

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + EP+F+ Q
Sbjct: 169 RDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQ 228

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK KLVS + +  VE  +    + +L++ PI+A  +   ++E +  R   RK RE+ R+ 
Sbjct: 229 TKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTRRK 288

Query: 443 A-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+LNV  
Sbjct: 289 GVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEK 348

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +K+ +++QI+ LV ALGC    +    + LRY ++IIMTDADVDGAHI +LLLTF Y
Sbjct: 349 ARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFLY 408

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++M D+IE+ ++++  PPL++I  G    Y  D+      +      G
Sbjct: 409 RQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQG 456


>gi|310781211|gb|ADP24081.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 397

 Score =  290 bits (741), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 155/410 (37%), Positives = 229/410 (55%), Gaps = 17/410 (4%)

Query: 73  ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
            LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+
Sbjct: 1   GLHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEV 59

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
            LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + 
Sbjct: 60  ALTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHGKIYRQIYERGVPKTD 119

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
           LE   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  
Sbjct: 120 LEVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGK 177

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
           E       E F + GG+ ++++    N+ ++  E    + +        VE  + + +  
Sbjct: 178 E-------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNDSY 227

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369
              I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I
Sbjct: 228 NENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAI 287

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           +SV ++ P+F GQTKTKL + + +  VEN + D    +L +NP  A  ++E   + +  R
Sbjct: 288 VSVKLKNPQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAR 347

Query: 430 LRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
              RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSA
Sbjct: 348 EAARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSA 397


>gi|310781005|gb|ADP23978.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 396

 Score =  289 bits (740), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 154/409 (37%), Positives = 228/409 (55%), Gaps = 17/409 (4%)

Query: 73  ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
            LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+
Sbjct: 1   GLHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEV 59

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
            LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + 
Sbjct: 60  ALTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTD 119

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
           LE   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  
Sbjct: 120 LEVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGK 177

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
           E       E F + GG+ ++++    N+ ++  E    + +        VE  + + +  
Sbjct: 178 E-------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNDSY 227

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369
              I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I
Sbjct: 228 NENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAI 287

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           +SV ++ P+F GQTKTKL + + +  VEN + D    +L +NP  A  ++E   + +  R
Sbjct: 288 VSVKLKNPQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAR 347

Query: 430 LRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
              RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGS
Sbjct: 348 EAARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGS 396


>gi|167077369|gb|ABZ10906.1| DNA gyrase subunit B [Burkholderia ambifaria]
          Length = 630

 Score =  289 bits (740), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 167/468 (35%), Positives = 249/468 (53%), Gaps = 29/468 (6%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKVRNKRGT 205
           G+S VNALS  L +TV R       +F RG+             +SP+       N RGT
Sbjct: 1   GVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQERVLEKVDGVEVSPMLVTGDTEN-RGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            + F  DP IFG    +    L K  +  ++L+  V+   +  +   E         F F
Sbjct: 60  EVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD-------FAF 111

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG+K +++   + ++ +   IF    EK G     VE A+ W +     +  + N I  
Sbjct: 112 AGGVKGFVEYINKTKTNLHPTIFHANGEKDGV---GVEVAMQWNDSYNENVLCFTNNIPQ 168

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + EP+F+ Q
Sbjct: 169 RDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQ 228

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK KLVS + +  VE  +    + +L++ P++A  +   ++E +  R   RK RE+ R+ 
Sbjct: 229 TKDKLVSSEVRAPVEEVVAKALEEFLLETPLDAKIICGKIVEAARARDAARKAREMTRRK 288

Query: 443 A-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+LNV  
Sbjct: 289 GVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEK 348

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +K+ +++QI+ LV ALGC         + LRY ++IIMTDADVDGAHI +LLLTF Y
Sbjct: 349 ARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFLY 408

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++M D+IE+ ++++  PPL++I  G    Y  D+      +      G
Sbjct: 409 RQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDTELNAHMLRLALQG 456


>gi|297581951|ref|ZP_06943871.1| DNA gyrase subunit B [Vibrio cholerae RC385]
 gi|297533818|gb|EFH72659.1| DNA gyrase subunit B [Vibrio cholerae RC385]
          Length = 247

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 100/255 (39%), Positives = 159/255 (62%), Gaps = 10/255 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGY   I V
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+++ +T+ R   I +Q +  G+P +PL        + GT + F P  + F + 
Sbjct: 121 SVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDT-ERTGTTVRFWPSAQTFTN- 178

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V    + ++E  +K      + F + GG++ ++     N
Sbjct: 179 IEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEGGIQAFVTHLNRN 232

Query: 280 RSLISSEIFTGKTEK 294
           ++ I  ++F    E+
Sbjct: 233 KTPIHEKVFHFNQER 247


>gi|83655611|gb|ABC39589.1| DNA gyrase subunit B [Burkholderia cepacia]
          Length = 630

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 164/467 (35%), Positives = 247/467 (52%), Gaps = 27/467 (5%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK-----------EKVRNKRGTR 206
           G+S VNALS  L +TV R       +F RG+    + +                  RGT 
Sbjct: 1   GVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLEMVDGVEVSPMLVTGDTENRGTE 60

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F  DP IFG    +    L K  +  ++L+  V+   +  +   E         F F 
Sbjct: 61  VHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD-------FAFA 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+K +++   + ++ +   +F    EK G     VE A+ W +     +  + N I   
Sbjct: 113 GGVKGFVEFINKTKTNLHPTVFFATGEKDGV---GVEVAMQWNDSYNENVLCFTNNIPQR 169

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + EP+F+ QT
Sbjct: 170 DGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQT 229

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443
           K KLVS + +  VE  +    + +L++ PI+A  +   ++E +  R   RK RE+ R+  
Sbjct: 230 KDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTRRKG 289

Query: 444 -IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
            +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+LNV  A
Sbjct: 290 VLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKA 349

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
             +K+ +++QI+ LV ALGC    +    + LRY ++IIMTDADVDGAHI +LLLTF Y+
Sbjct: 350 RYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFLYR 409

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +M D+IE+ ++++  PPL++I  G    Y  D+      +      G
Sbjct: 410 QMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQG 456


>gi|167077355|gb|ABZ10899.1| DNA gyrase subunit B [Burkholderia cenocepacia]
          Length = 630

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 167/468 (35%), Positives = 250/468 (53%), Gaps = 29/468 (6%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKVRNKRGT 205
           G+S VNALS  L +TV R       +F RG+             +SP+       N RGT
Sbjct: 1   GVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLETVDGVEVSPMLVTGDTEN-RGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            + F  DP IFG    +    L K  +  ++L+  V+   +  +   E         F F
Sbjct: 60  EVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD-------FAF 111

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG+K +++   + ++ +   +F    EK G     VE A+ W +     +  + N I  
Sbjct: 112 AGGVKGFVEYINKTKTNLHPTVFFANGEKDGV---GVEVAMQWNDSYNENVLCFTNNIPQ 168

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + EP+F+ Q
Sbjct: 169 RDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQ 228

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK KLVS + +  VE  +    + +L++ PI+A  +   ++E +  R   RK RE+ R+ 
Sbjct: 229 TKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTRRK 288

Query: 443 A-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+LNV  
Sbjct: 289 GVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEK 348

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +K+ +++QI+ LV ALGC    +    + LRY ++IIMTDADVDGAHI +LLLTF Y
Sbjct: 349 ARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFLY 408

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++M D+IE+ ++++  PPL++I  G    Y  D+      +      G
Sbjct: 409 RQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQG 456


>gi|68138756|gb|AAY86010.1| GyrB [Burkholderia cenocepacia]
          Length = 631

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 167/468 (35%), Positives = 250/468 (53%), Gaps = 29/468 (6%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKVRNKRGT 205
           G+S VNALS  L +TV R       +F RG+             +SP+       N RGT
Sbjct: 1   GVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLEVVDGVEVSPMLVTGDTEN-RGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            + F  DP IFG    +    L K  +  ++L+  V+   +  +   E         F F
Sbjct: 60  EVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD-------FAF 111

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG+K +++   + ++ +   +F    EK G     VE A+ W +     +  + N I  
Sbjct: 112 AGGVKGFVEYINKTKTNLHPTVFFANGEKDGV---GVEVAMQWNDSYNENVLCFTNNIPQ 168

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + EP+F+ Q
Sbjct: 169 RDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQ 228

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK KLVS + +  VE  +    + +L++ PI+A  +   ++E +  R   RK RE+ R+ 
Sbjct: 229 TKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTRRK 288

Query: 443 A-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+LNV  
Sbjct: 289 GVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEK 348

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +K+ +++QI+ LV ALGC    +    + LRY ++IIMTDADVDGAHI +LLLTF Y
Sbjct: 349 ARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFLY 408

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++M D+IE+ ++++  PPL++I  G    Y  D+      +      G
Sbjct: 409 RQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQG 456


>gi|68138687|gb|AAY86001.1| GyrB [Burkholderia cenocepacia]
          Length = 627

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 168/468 (35%), Positives = 249/468 (53%), Gaps = 29/468 (6%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKVRNKRGT 205
           G+S VNALS  L +TV R       +F RG+             +SP+       N RGT
Sbjct: 1   GVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLEVVDGVEVSPMLVTGDTEN-RGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            + F  DP IFG    +    L K  +  ++L+  V+   +  +   E         F F
Sbjct: 60  EVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD-------FAF 111

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG+K +++   + ++ +   +F    EK G     VE A+ W +     +  + N I  
Sbjct: 112 AGGVKGFVEYINKTKTNLHPTVFFANGEKDGV---GVEVAMQWNDSYNENVLCFTNNIPQ 168

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + EP+F+ Q
Sbjct: 169 RDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQ 228

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK KLVS + +  VE  +    + +L++ PI+A  +   ++E +  R   RK RE+ R+ 
Sbjct: 229 TKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTRRK 288

Query: 443 A-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+LNV  
Sbjct: 289 GVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEK 348

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
           A  +K+ +++QI+ LV ALGC         E LRY ++IIMTDADVDGAHI +LLLTF Y
Sbjct: 349 ARYDKLLSSEQIVTLVTALGCGIGKDDYNLEKLRYHRIIIMTDADVDGAHIRTLLLTFLY 408

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++M D+IE+ ++++  PPL++I  G    Y  D+      +      G
Sbjct: 409 RQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQG 456


>gi|167077371|gb|ABZ10907.1| DNA gyrase subunit B [Burkholderia pyrrocinia]
          Length = 630

 Score =  289 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 166/467 (35%), Positives = 247/467 (52%), Gaps = 27/467 (5%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK-----------EKVRNKRGTR 206
           G+S VNALS  L +TV R       +F RGI    + +K                 RGT 
Sbjct: 1   GVSCVNALSSWLRLTVRRNGKKHFMEFHRGIAQERVIEKVDGVEVSPMLVTGDTENRGTE 60

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F  DP IFG    +    L K  +  ++L+  V+   +  +   E         F F 
Sbjct: 61  VHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD-------FAFA 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+K +++   + ++ +   +F    EK G     VE A+ W +     +  + N I   
Sbjct: 113 GGVKGFVEYINKTKTNLHPTVFHAIGEKDGV---GVEVAMQWNDSYNENVLCFTNNIPQR 169

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + EP+F+ QT
Sbjct: 170 DGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQT 229

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443
           K KLVS + +  VE  +    + +L++ PI+A  +   ++E +  R   RK RE+ R+  
Sbjct: 230 KDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTRRKG 289

Query: 444 -IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
            +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+LNV  A
Sbjct: 290 VLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKA 349

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
             +K+ +++QI+ LV ALGC         + LRY ++IIMTDADVDGAHI +LLLTF Y+
Sbjct: 350 RYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFLYR 409

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +M D+IE+ ++++  PPL++I  G    Y  D+      +      G
Sbjct: 410 QMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQG 456


>gi|253742615|gb|EES99414.1| DNA topoisomerase II [Giardia intestinalis ATCC 50581]
          Length = 1492

 Score =  289 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 143/741 (19%), Positives = 254/741 (34%), Gaps = 116/741 (15%)

Query: 45  DASSIRILEGLEPVRMRPGMYIGGTDE----------------------KALHHLFSEVI 82
             + I+ + G E V +RP MY+G                            L  +F E+I
Sbjct: 3   QKTKIQRVTGSEHVLLRPDMYVGSVSSAETFLWLYNPDQGLYYTKANIVPGLCKIFDEII 62

Query: 83  DNAMDEVI------AGY-ANLIEVSLDG-NGFLTVVDNGRGIPVE--NH-PKFPNKSTLE 131
            NA D         AG+  + I+  +D  +G ++V ++G    VE   H  +        
Sbjct: 63  VNASDNKQRDSDRSAGHKMSYIKCDVDVVSGAISVENDG----VEGLLHFDEKEKMYLPT 118

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           +    L     +D++   ++GG +G G  + N  S +  V +     +F Q ++  +  +
Sbjct: 119 LAFGILMTSSNYDDTEQRVTGGRNGYGAKLTNIFSTKFTVLLQENGRVFEQTWTDNMKNT 178

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKA-----GFDAARLLKMTQSKAYLSGRVKTCWS 246
              + E V++K+   I F   P               AA +++     A  +  +K   +
Sbjct: 179 QSPRIEDVKDKKKNFIRFSFTPDYMKFGMTSGLDRDHAAYMMRRAVDVAGCNIGLKLIIN 238

Query: 247 CDK----------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS------------ 284
            ++           +  +   PE  +FY             ++ S               
Sbjct: 239 GEELKIANFEQYARMVYRSINPEITQFYEASRGDAAQVGANDSDSEPDLKSAATKAKPKA 298

Query: 285 ---------------------SEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTI 322
                                   +T    K  +     +  + + +       S+ N+I
Sbjct: 299 KRTKKAVETNSLLVPIDELSKPSDWTSDYLKVISVNKFWDIGLGYTDSGELVQVSFVNSI 358

Query: 323 LTDEGGTHESGLRVALTRGIKK---YAELTQNKRAISIISDDLMISAVGILSVFIREPEF 379
            T +GGTH   +   +   +      +     K A  +    L    V  +   +  P F
Sbjct: 359 NTTDGGTHVDAILDLIMSQLNDILIKSFQQDAKNAKKLTRQQLKSCLVLFIRSLVVNPSF 418

Query: 380 AGQTKTKLVSLD----AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS--EERLRRR 433
             QTK  L +             A        LV+   +   L   + + S  +      
Sbjct: 419 DSQTKISLKTDKAALLRSLGSTQAELTNLATQLVKRIQDVRPLWNALRQASYNQAAKLLT 478

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG-----GSAKQARNRSNQA 488
           K         +   +L   +A  ++  +  T L + EGDSA      G +     +    
Sbjct: 479 KTDGSKTSQLLGIPKLDDAIAAGTRESSKCT-LILTEGDSAKALAVDGISSIEDGKKYYG 537

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALG----CRTRSQYREEDLRYEKVIIMTDA 544
           V PLRGK++NV +   +K+ NN +I +L + LG        +Q     LRY  V+IMTD 
Sbjct: 538 VFPLRGKVINVRNESIDKVSNNAEITNLKKILGLKQGMDYSTQEARNTLRYGHVMIMTDQ 597

Query: 545 DVDGAHIASLLLTFFYQEMYDLIE-QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEE 603
           D DG+HI  LL+  F      L    K L     P+ R TQ       +     +K  + 
Sbjct: 598 DPDGSHIKGLLINLFDTYWNGLARSNKFLDFFITPIVRCTQARNMKTFYTIPEYKKWTQT 657

Query: 604 FKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLM 663
                  K  I+ +KGLG    +  K+           R  +  +  S    + + +K  
Sbjct: 658 V--TDLPKWNINYYKGLGSSNTTDAKQYFQQIAN---NRKTLIYNPESASKLKLAFDK-- 710

Query: 664 GTKADERFKFI--QERASFID 682
              AD+R  +I   +  +++D
Sbjct: 711 -KLADDRKTWISGTDPDTYLD 730


>gi|167077363|gb|ABZ10903.1| DNA gyrase subunit B [Burkholderia stabilis]
          Length = 630

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 166/467 (35%), Positives = 246/467 (52%), Gaps = 27/467 (5%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK-----------EKVRNKRGTR 206
           G+S VNALS  L +TV R       +F RGI    + +                  RGT 
Sbjct: 1   GVSCVNALSSWLRLTVRRGGKKRFMEFHRGIAQDRVLEMVDGVEVSPMLVTGDTENRGTE 60

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F  DP IFG    +    L K  +  ++L+  V+   +  +   E         F F 
Sbjct: 61  VHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD-------FAFA 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+K +++   + ++ +   IF    EK G     VE A+ W +     +  + N I   
Sbjct: 113 GGVKGFVEYINKTKTNLHPTIFFATGEKDGV---GVEVAMQWNDSYNENVLCFTNNIPQR 169

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + EP+F+ QT
Sbjct: 170 DGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQT 229

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443
           K KLVS + +  VE  +    + +L++ PI+A  +   ++E +  R   RK RE+ R+  
Sbjct: 230 KDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTRRKG 289

Query: 444 -IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
            +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+LNV  A
Sbjct: 290 VLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKA 349

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
             +K+ +++QI+ LV ALGC         + LRY ++IIMTDADVDGAHI +LLLTF Y+
Sbjct: 350 RYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFLYR 409

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +M D+IE+ ++++  PPL++I  G    Y  D+      +      G
Sbjct: 410 QMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQG 456


>gi|167077365|gb|ABZ10904.1| DNA gyrase subunit B [Burkholderia stabilis]
          Length = 630

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 166/467 (35%), Positives = 247/467 (52%), Gaps = 27/467 (5%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK-----------EKVRNKRGTR 206
           G+S VNALS  L +TV R       +F RGI    + +                  RGT 
Sbjct: 1   GVSCVNALSSWLRLTVRRGGKKRFMEFHRGIAQDRVLEMVDGVEVSPMLVTGDTENRGTE 60

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F  DP IFG    +    L K  +  ++L+  V+   +  +   E         F F 
Sbjct: 61  VHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD-------FAFA 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+K +++   + ++ +   IF    EK G     VE A+ W +     +  + N I   
Sbjct: 113 GGVKGFVEYINKTKTNLHPTIFFATGEKDGV---GVEVAMQWNDSYNENVLCFTNNIPQR 169

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + EP+F+ QT
Sbjct: 170 DGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQT 229

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443
           K KLVS + +  VE  +    + +L++ PI+A  +   ++E +  R   RK RE+ R+  
Sbjct: 230 KDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTRRKG 289

Query: 444 -IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
            +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+LNV  A
Sbjct: 290 VLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKA 349

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
             +K+ +++QI+ LV ALGC    +    + LRY ++IIMTDADVDGAHI +LLLTF Y+
Sbjct: 350 RYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFLYR 409

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +M D+IE+ ++++  PPL++I  G    Y  D+      +      G
Sbjct: 410 QMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQG 456


>gi|255030251|ref|ZP_05302202.1| DNA topoisomerase IV subunit B [Listeria monocytogenes LO28]
          Length = 307

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 110/292 (37%), Positives = 167/292 (57%), Gaps = 15/292 (5%)

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGK 452
           V+  + +   ++L +NP  ++ L++  ++  E R   RK RE  R    +K     L GK
Sbjct: 2   VDAVVAEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGK 61

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L        +  EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A  + I  N++
Sbjct: 62  LTPAQSRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEE 121

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  ++  +G    +++  ED  Y+KV+IMTDAD DGAHI  LLLTFFY+ M  L+E   +
Sbjct: 122 ISTIIHTVGAGVGTEFDVEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKV 181

Query: 573 FLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           F+  PPL+++++G   K V  YA  +E     +++  K       I R+KGLGEM A QL
Sbjct: 182 FIALPPLYKVSRGSGKKEVIEYAWTDEELDSAIQKIGK----GYMIQRYKGLGEMNADQL 237

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            ET M+ + RTL+RV ++         +  +  LMG K + R ++I++   F
Sbjct: 238 WETTMNPDTRTLIRVRVDD----SARAERRVATLMGDKVEPRRQWIEKHVEF 285


>gi|239735443|dbj|BAH70488.1| gyrase B subunit [Cardinium endosymbiont of Tetranychus
           pueraricola]
          Length = 462

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 177/468 (37%), Positives = 260/468 (55%), Gaps = 16/468 (3%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+S V+ALS  L VTV R   I+ Q+ ++GIP  P+++       RGT + F PD
Sbjct: 1   GLHGVGVSCVDALSPHLEVTVYRNGKIYKQEDAQGIPRYPVKEVGSTA-LRGTTVHFTPD 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
             IF     ++   ++   Q  AYL+  +       +E  E+   P K+ F+  GGL  +
Sbjct: 60  NSIFTTTV-YNLHTIVNRLQELAYLNVGLTMQLEDHRERDEQN-SPFKQTFHSEGGLLEF 117

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           +      +  I       + EK       V+ A+ +       + SY N I T EGG H 
Sbjct: 118 VSHLDSTKVSIMPAPILVEGEKNNVI---VQVAMTYNTGYSETVVSYVNNIHTIEGGMHV 174

Query: 332 SGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G + ALTR +K YA+ +    K  I II DD       ++SV + EP+F GQTKTKL +
Sbjct: 175 TGFKRALTRTLKSYADKSGLLEKAKIEIIGDDFREGLTAVISVKVAEPQFEGQTKTKLGN 234

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLR 448
            + Q  VE+ + +   +YL ++P EA  ++  VI      +  R+ +  V RK  +    
Sbjct: 235 AEVQGAVESCVAEVLHYYLEEHPKEAKLIINKVIVAAQARQAARKAREMVQRKNVLMSNS 294

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS+      ELF+VEGDSAGG+AK  RNR  QA+LPL+GKILNV  A + KI 
Sbjct: 295 LPGKLADCSERDPALCELFLVEGDSAGGTAKMGRNRRFQAILPLKGKILNVEKAQTYKIY 354

Query: 509 NNQQIMDLVQALGCRT-----RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +N+Q+ +++ ALG              + LRY K++IMTDADVDG+HI +L+LTFF++ M
Sbjct: 355 DNEQVRNMITALGVSMGTDGTDQATHLDKLRYHKIVIMTDADVDGSHIRTLILTFFFRYM 414

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK-KHGKG 610
            ++IE+ HL++ SPPL+ + +  +  Y   E  K+K ++E   K GK 
Sbjct: 415 REVIEKGHLYIASPPLYLVKRDKEEHYCWTELEKEKWVKELSLKDGKA 462


>gi|23978272|dbj|BAC21122.1| DNA gyrase B subunit [Pleurocapsa sp. PCC 7314]
          Length = 393

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 135/398 (33%), Positives = 208/398 (52%), Gaps = 12/398 (3%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T  K LHHL  EV+DN++DE +AG+   IEV ++ +G +TV D+GRGIP   H K   KS
Sbjct: 1   TGPKGLHHLVYEVVDNSIDEALAGFCTHIEVDINPDGSITVTDDGRGIPTGIHHK-TGKS 59

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
            LE ++T LHAGGKF +  Y++SGGLHGVG+SVVNALS  + VTV R   I  Q++ RG 
Sbjct: 60  ALETVMTVLHAGGKFGDGGYKVSGGLHGVGVSVVNALSKLVEVTVWRDKKIHLQRYERGK 119

Query: 189 PLSP--LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           P      +  +    + GT + F PD  IF +   F+   L K  +  AYL+  +K  ++
Sbjct: 120 PQGKLATDPNKDDPKRTGTSVHFVPDETIFTETTVFEYEILAKRLKELAYLNAGIKITFT 179

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
            ++          ++ F + GG+K Y++     +  +  +I     EKKG     V    
Sbjct: 180 DNRS-----EEIHQDIFCYEGGIKEYVEYMTPEKDPLHQDIIYVNKEKKGVT-VEVALQW 233

Query: 307 AWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMI 364
                +  +  + N I T +GGTH  GL+  LTR +  +A      +    ++  +++  
Sbjct: 234 CIDSYSDNLLGFANNIRTIDGGTHLEGLKTVLTRTMNSFARKRNKIKDNESNLGGENVRE 293

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
              G++SV + +PEF GQTKTKL + + +  V++ + +  + YL  N      +++  +E
Sbjct: 294 GLTGVVSVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLNDYLEFNLSVGDAIIDKALE 353

Query: 425 RSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIA 461
                   R  RE V RK+ +    LPGKL+DCS    
Sbjct: 354 SFXAAEAARHARELVRRKSVLESSPLPGKLSDCSSRDP 391


>gi|310781277|gb|ADP24114.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781279|gb|ADP24115.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 398

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 155/410 (37%), Positives = 230/410 (56%), Gaps = 17/410 (4%)

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133
           LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+ 
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVA 59

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + L
Sbjct: 60  LTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHGKIYRQIYERGVPKTDL 119

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           E   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  E
Sbjct: 120 EVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGKE 177

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
                  E F + GG+ ++++    N+ ++  E    + +        VE  + + +   
Sbjct: 178 -------EVFNYEGGIISFVKYLNRNKEVLHEEPIYMEAKNND---YEVEVCMQYNDSYN 227

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
             I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I+
Sbjct: 228 ENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIV 287

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV ++ P+F GQTKTKL + + +  VEN + +    +L +NP  A  ++E   + +  R 
Sbjct: 288 SVKLKNPQFEGQTKTKLGNSEMRSIVENVVTEKLTAFLEENPSVAKIIVEKATQAARARE 347

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
             RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSAK
Sbjct: 348 AARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAK 397


>gi|310781285|gb|ADP24118.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 397

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 155/410 (37%), Positives = 230/410 (56%), Gaps = 17/410 (4%)

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133
           LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+ 
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVA 59

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + L
Sbjct: 60  LTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHGKIYRQIYERGVPKTDL 119

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           E   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  E
Sbjct: 120 EVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGKE 177

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
                  E F + GG+ ++++    N+ ++  E    + +        VE  + + +   
Sbjct: 178 -------EVFNYEGGIISFVKYLNRNKEVLHEEPIYMEAKNND---YEVEVCMQYNDSYN 227

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
             I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I+
Sbjct: 228 ENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIV 287

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV ++ P+F GQTKTKL + + +  VEN + +    +L +NP  A  ++E   + +  R 
Sbjct: 288 SVKLKNPQFEGQTKTKLGNSEMRSIVENVVTEKLTAFLEENPSVAKIIVEKATQAARARE 347

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
             RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSAK
Sbjct: 348 AARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAK 397


>gi|310780901|gb|ADP23926.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780903|gb|ADP23927.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780939|gb|ADP23945.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780941|gb|ADP23946.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780943|gb|ADP23947.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780947|gb|ADP23949.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781067|gb|ADP24009.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781135|gb|ADP24043.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781137|gb|ADP24044.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781139|gb|ADP24045.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781141|gb|ADP24046.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781157|gb|ADP24054.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 398

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 156/410 (38%), Positives = 230/410 (56%), Gaps = 17/410 (4%)

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133
           LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+ 
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVA 59

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + L
Sbjct: 60  LTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDL 119

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           E   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  E
Sbjct: 120 EVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGKE 177

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
                  E F + GG+ ++++    N+ ++  E    + +        VE  + + +   
Sbjct: 178 -------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNDSYN 227

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
             I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I+
Sbjct: 228 ENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIV 287

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV ++ P+F GQTKTKL + + +  VEN + D    +L +NP  A  ++E   + +  R 
Sbjct: 288 SVKLKNPQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARARE 347

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
             RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSAK
Sbjct: 348 AARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAK 397


>gi|310780929|gb|ADP23940.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780931|gb|ADP23941.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780933|gb|ADP23942.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780935|gb|ADP23943.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780969|gb|ADP23960.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780971|gb|ADP23961.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780973|gb|ADP23962.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780975|gb|ADP23963.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780977|gb|ADP23964.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780979|gb|ADP23965.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780981|gb|ADP23966.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780983|gb|ADP23967.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780985|gb|ADP23968.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780987|gb|ADP23969.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780989|gb|ADP23970.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780991|gb|ADP23971.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780993|gb|ADP23972.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780995|gb|ADP23973.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781019|gb|ADP23985.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781021|gb|ADP23986.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781025|gb|ADP23988.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781027|gb|ADP23989.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781077|gb|ADP24014.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781079|gb|ADP24015.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781089|gb|ADP24020.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781091|gb|ADP24021.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781093|gb|ADP24022.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781095|gb|ADP24023.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781097|gb|ADP24024.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781099|gb|ADP24025.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781101|gb|ADP24026.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781103|gb|ADP24027.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781105|gb|ADP24028.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781107|gb|ADP24029.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781109|gb|ADP24030.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781111|gb|ADP24031.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781113|gb|ADP24032.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781115|gb|ADP24033.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781117|gb|ADP24034.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781119|gb|ADP24035.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781121|gb|ADP24036.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781123|gb|ADP24037.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781125|gb|ADP24038.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781127|gb|ADP24039.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781145|gb|ADP24048.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781147|gb|ADP24049.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781149|gb|ADP24050.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781151|gb|ADP24051.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781153|gb|ADP24052.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781155|gb|ADP24053.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781159|gb|ADP24055.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781161|gb|ADP24056.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781163|gb|ADP24057.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781165|gb|ADP24058.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 396

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 155/409 (37%), Positives = 229/409 (55%), Gaps = 17/409 (4%)

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133
           LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+ 
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVA 59

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + L
Sbjct: 60  LTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDL 119

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           E   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  E
Sbjct: 120 EVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGKE 177

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
                  E F + GG+ ++++    N+ ++  E    + +        VE  + + +   
Sbjct: 178 -------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNDSYN 227

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
             I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I+
Sbjct: 228 ENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIV 287

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV ++ P+F GQTKTKL + + +  VEN + D    +L +NP  A  ++E   + +  R 
Sbjct: 288 SVKLKNPQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARARE 347

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
             RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSA
Sbjct: 348 AARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSA 396


>gi|308159431|gb|EFO61962.1| DNA topoisomerase II [Giardia lamblia P15]
          Length = 1492

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 147/741 (19%), Positives = 258/741 (34%), Gaps = 116/741 (15%)

Query: 45  DASSIRILEGLEPVRMRPGMYIGGTD----------------------EKALHHLFSEVI 82
             + I+ + G E V +RP MY+G                            L  +F E+I
Sbjct: 3   QKAKIQRVTGSEHVLLRPDMYVGSVSAAETFLWLYEPGQGLYYTKANIVPGLCKIFDEII 62

Query: 83  DNAMDEVI------AGY-ANLIEVSLDG-NGFLTVVDNGRGIPVE--NH-PKFPNKSTLE 131
            NA D         AG+  + I+ ++D  +G ++V ++G    VE   H  +        
Sbjct: 63  VNASDNKQRDSDRSAGHKMSYIKCNVDVVSGAISVENDG----VEGLLHFDEKEKMYLPT 118

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           +    L     +D++   ++GG +G G  + N  S +  V +     +F Q ++  +  +
Sbjct: 119 LAFGILMTSSNYDDTEQRVTGGRNGYGAKLTNIFSTKFTVLLQENGQVFEQTWTDNMKNT 178

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKA-----GFDAARLLKMTQSKAYLSGRVKTCWS 246
              + E V++K+   I F   P               AA +++     A  +  +K   +
Sbjct: 179 KPPRIEDVKDKKKNFIRFSFTPDYMKFGMTSGLDRDHAAYMMRRAVDVAGCNVGLKLIIN 238

Query: 247 CDK----------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENR---------------- 280
             +           +  +   PE  +FY  G   T      ++                 
Sbjct: 239 GTELKIANFEQYARMVYRSINPEITQFYEAGRSDTAQADANDSDSDLDIKFAAAKSKPKT 298

Query: 281 -----------------SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTI 322
                             L     +T    K        +  + + +       S+ N+I
Sbjct: 299 RKTKKAVETNSLLIPVDELSKPSDWTLDYLKVIPVNKFWDIGLGYTDSGELVQVSFVNSI 358

Query: 323 LTDEGGTHESGLRVALTRGIKK---YAELTQNKRAISIISDDLMISAVGILSVFIREPEF 379
            T +GGTH   +   +   +      +     K A  +    L    V  +   +  P F
Sbjct: 359 NTTDGGTHVDAILDLVMSQLNDILIKSFQQDAKNAKKLTRQQLKSCLVLFIRSLVVNPSF 418

Query: 380 AGQTKTKLVSLD----AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS--EERLRRR 433
             QTK  L +             A        LV+   E   L + + + S  +      
Sbjct: 419 DSQTKISLKTDKAALLRSLGSTQAELAALATQLVKRIQEIRPLWDSLRQASYNQAAKLLT 478

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG-----GSAKQARNRSNQA 488
           K         +   +L   +A  ++  +  T L + EGDSA      G +     +    
Sbjct: 479 KTDGSKTSQLLGIPKLDDAIAAGTRESSKCT-LILTEGDSAKALAVDGISSIEDGKKYYG 537

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED----LRYEKVIIMTDA 544
           V PLRGK++NV +   +K+ NN +I +L + LG +    Y  +D    LRY  V+IMTD 
Sbjct: 538 VFPLRGKVINVRNESIDKVSNNAEITNLKKILGLKQGMDYSTQDARNTLRYGHVMIMTDQ 597

Query: 545 DVDGAHIASLLLTFFYQEMYDLIE-QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEE 603
           D DG+HI  LL+  F      L    K L     P+ R TQ       +     +K  + 
Sbjct: 598 DPDGSHIKGLLINLFDTYWNGLARSNKFLDFFITPIVRCTQARNMKTFYTIPEYKKWTQT 657

Query: 604 FKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLM 663
                  K  I+ +KGLG    +  K+           R  +  +  S    + + +K  
Sbjct: 658 V--TDLPKWNINYYKGLGSSNTTDAKQYFQQIAN---NRKTLIYNPESASKLKLAFDK-- 710

Query: 664 GTKADERFKFI--QERASFID 682
              AD+R  +I   +  +++D
Sbjct: 711 -KLADDRKTWISGTDPDTYLD 730


>gi|295668785|ref|XP_002794941.1| DNA topoisomerase [Paracoccidioides brasiliensis Pb01]
 gi|226285634|gb|EEH41200.1| DNA topoisomerase [Paracoccidioides brasiliensis Pb01]
          Length = 1582

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 122/589 (20%), Positives = 231/589 (39%), Gaps = 43/589 (7%)

Query: 112 NGRGIPVE---NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDE 168
           +G   P +    + K       E+I   L     +++   +++GG +G G  + N  S E
Sbjct: 112 DGVAAPTDSSERYQKKEKLYIPELIFGHLLTSSNYNDMQQKVTGGRNGYGAKLCNIFSTE 171

Query: 169 LHVTVA--RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD-PKIFGDKAGFDAA 225
             +  A  RQN  + Q ++  +      K    + +  T++TF PD  K   +    D  
Sbjct: 172 FTIETADSRQNKKYKQTWTNNMSKMGKAKITDCKGQDYTKVTFTPDFKKFGMEGVDDDFE 231

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
            L+K       ++G  K     +          +    Y     K   +   ++++ I  
Sbjct: 232 ALVKRR--VYDMAGTCKVIVKLNGSRIPVRNFKQYMAMYTNAIKKERGEEAAKDKTEILL 289

Query: 286 EIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKY 345
           +                E   A  + + +  S+ N+I T  GG+H + +   +   + + 
Sbjct: 290 D----------NPDPRWEVGFAVSDGSFQQVSFVNSIATTSGGSHVNAVADQICNRLAE- 338

Query: 346 AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
               +NK   S+    +       ++  I  P F  QTK +L +  +Q   +  L + F 
Sbjct: 339 TVKKRNKTGASLKPAQIRNHIFVFVNSQIVNPAFTSQTKEQLTTKPSQFGSKIVLSEEFL 398

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTE 465
             +++  +        ++  +E++  +  ++    + +                  H   
Sbjct: 399 KKVIKTQVMEN-----IMHFAEKKADQILKKSDGNRRSRMNNPKLTDANKAGTKEGHHCT 453

Query: 466 LFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           L + EGDSA G A   R         V PLRGK+LNV  A  ++I  N +I ++   LG 
Sbjct: 454 LILTEGDSAKGLAMAGRAIVGPDLFGVFPLRGKMLNVRDASVDQISKNAEIQNIKNFLGL 513

Query: 523 RTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK-HLFLISPPLF 580
           + + +Y +   LRY  ++IMTD D DG+HI  LL+ F       L++    L     P+ 
Sbjct: 514 QHKKEYTDTKGLRYGHLMIMTDQDHDGSHIKGLLINFLQVAFPSLLKIPQFLIEFITPIV 573

Query: 581 RITQGT-----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
           ++ +G       S      +  +   +E   H +   E   +KGLG       +    D 
Sbjct: 574 KVWKGDPKNPIISKSFFTMQEYETW-KEIHGHDRR-WEKKYYKGLGTSTTEDAEIYFQDL 631

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE--RASFID 682
           +K  L +  + +D N  +    + +K    KADER +++++    +F+D
Sbjct: 632 DKH-LKQFHVMQD-NEAQLIDLAFSK---KKADERKEWLRQFKPGTFLD 675


>gi|310781239|gb|ADP24095.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781241|gb|ADP24096.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781243|gb|ADP24097.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781259|gb|ADP24105.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781261|gb|ADP24106.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 398

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 155/410 (37%), Positives = 229/410 (55%), Gaps = 17/410 (4%)

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133
           LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+ 
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVA 59

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + L
Sbjct: 60  LTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDL 119

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           E   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  E
Sbjct: 120 EVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGKE 177

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
                  E F + GG+ ++++    N+ ++  E    + +        VE  + +     
Sbjct: 178 -------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNNSYN 227

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
             I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I+
Sbjct: 228 ENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIV 287

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV ++ P+F GQTKTKL + + +  VEN + +    +L +NP  A  ++E   + +  R 
Sbjct: 288 SVKLKNPQFEGQTKTKLGNSEMRSIVENVVTEKLTAFLEENPSVAKIIVEKATQAARARE 347

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
             RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSAK
Sbjct: 348 AARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAK 397


>gi|310781193|gb|ADP24072.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781195|gb|ADP24073.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781197|gb|ADP24074.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 398

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 156/410 (38%), Positives = 230/410 (56%), Gaps = 17/410 (4%)

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133
           LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+ 
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVA 59

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + L
Sbjct: 60  LTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHGKIYRQIYERGVPKTDL 119

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           E   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  E
Sbjct: 120 EVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGKE 177

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
                  E F + GG+ ++++    N+ ++  E    + +        VE  + + +   
Sbjct: 178 -------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNDSYN 227

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
             I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I+
Sbjct: 228 ENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIV 287

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV ++ P+F GQTKTKL + + +  VEN + D    +L +NP  A  ++E   + +  R 
Sbjct: 288 SVKLKNPQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARARE 347

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
             RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSAK
Sbjct: 348 AARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAK 397


>gi|310781201|gb|ADP24076.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781205|gb|ADP24078.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781207|gb|ADP24079.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781215|gb|ADP24083.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781217|gb|ADP24084.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781219|gb|ADP24085.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781221|gb|ADP24086.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781223|gb|ADP24087.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 396

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 155/409 (37%), Positives = 229/409 (55%), Gaps = 17/409 (4%)

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133
           LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+ 
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVA 59

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + L
Sbjct: 60  LTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHGKIYRQIYERGVPKTDL 119

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           E   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  E
Sbjct: 120 EVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGKE 177

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
                  E F + GG+ ++++    N+ ++  E    + +        VE  + + +   
Sbjct: 178 -------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNDSYN 227

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
             I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I+
Sbjct: 228 ENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIV 287

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV ++ P+F GQTKTKL + + +  VEN + D    +L +NP  A  ++E   + +  R 
Sbjct: 288 SVKLKNPQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARARE 347

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
             RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSA
Sbjct: 348 AARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSA 396


>gi|310781251|gb|ADP24101.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 396

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 154/409 (37%), Positives = 228/409 (55%), Gaps = 17/409 (4%)

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133
           LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+ 
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVA 59

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + L
Sbjct: 60  LTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDL 119

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           E   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  E
Sbjct: 120 EVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGKE 177

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
                  E F + GG+ ++++    N+ ++  E    + +        VE  + +     
Sbjct: 178 -------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNNSYN 227

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
             I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I+
Sbjct: 228 ENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIV 287

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV ++ P+F GQTKTKL + + +  VEN + +    +L +NP  A  ++E   + +  R 
Sbjct: 288 SVKLKNPQFEGQTKTKLGNSEMRSIVENVVTEKLTAFLEENPSVAKIIVEKATQAARARE 347

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
             RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSA
Sbjct: 348 AARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSA 396


>gi|310780907|gb|ADP23929.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781083|gb|ADP24017.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781143|gb|ADP24047.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 397

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 156/410 (38%), Positives = 230/410 (56%), Gaps = 17/410 (4%)

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133
           LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+ 
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVA 59

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + L
Sbjct: 60  LTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDL 119

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           E   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  E
Sbjct: 120 EVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGKE 177

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
                  E F + GG+ ++++    N+ ++  E    + +        VE  + + +   
Sbjct: 178 -------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNDSYN 227

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
             I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I+
Sbjct: 228 ENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIV 287

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV ++ P+F GQTKTKL + + +  VEN + D    +L +NP  A  ++E   + +  R 
Sbjct: 288 SVKLKNPQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARARE 347

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
             RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSAK
Sbjct: 348 AARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAK 397


>gi|310781245|gb|ADP24098.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781247|gb|ADP24099.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 397

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 155/410 (37%), Positives = 229/410 (55%), Gaps = 17/410 (4%)

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133
           LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+ 
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVA 59

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + L
Sbjct: 60  LTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDL 119

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           E   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  E
Sbjct: 120 EVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGKE 177

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
                  E F + GG+ ++++    N+ ++  E    + +        VE  + +     
Sbjct: 178 -------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNNSYN 227

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
             I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I+
Sbjct: 228 ENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIV 287

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV ++ P+F GQTKTKL + + +  VEN + +    +L +NP  A  ++E   + +  R 
Sbjct: 288 SVKLKNPQFEGQTKTKLGNSEMRSIVENVVTEKLTAFLEENPSVAKIIVEKATQAARARE 347

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
             RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSAK
Sbjct: 348 AARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAK 397


>gi|19909723|dbj|BAB87057.1| DNA gyrase subunit B [Aquaspirillum serpens]
 gi|19909725|dbj|BAB87058.1| DNA gyrase subunit B [Aquaspirillum serpens]
          Length = 390

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 144/403 (35%), Positives = 224/403 (55%), Gaps = 17/403 (4%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
           D   LHH+  EV+DNA+DE +AG+ + I +++  +  +++ DNGRGIP + HP+   +S 
Sbjct: 1   DGPGLHHMVFEVLDNAIDEALAGHCDTIRITIHPDQSISIEDNGRGIPTDIHPE-KGRSA 59

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            E+I+T LHAGGKFD+++Y+ISGGLHGVG+SVVNALSD L + + R   +   +F RG P
Sbjct: 60  AEVIMTVLHAGGKFDSNSYKISGGLHGVGVSVVNALSDWLRLKIWRDGHVHEMEFRRGEP 119

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
           ++PL    + +  RGT +TF    K FG    +    L K  +  ++L+  V    S  +
Sbjct: 120 VAPLRATGQSQ-HRGTEVTFMASQKTFGL-IEYHYEILAKRIRELSFLNNGVSIILSDKR 177

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
              E       E F F GG+  +++    N+S + S+I+  + EK+G    TVE A+ W 
Sbjct: 178 SGKE-------ENFAFAGGVAGFVEYMNRNKSPLHSKIYYAQGEKEG---MTVEVAMQWN 227

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISA 366
           +     +  + N I   +GGTH + LR  LTR + +Y E  +   K  +    DD+    
Sbjct: 228 DSYQESVQCFTNNIPQRDGGTHLTALRAVLTRTLNQYIEEHEFAKKAKVETAGDDMREGL 287

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             +LSV + +P+F+ QTK KLVS +    V+  +      +L +NP EA  +   ++E +
Sbjct: 288 TCVLSVKLPDPKFSSQTKDKLVSSEISPIVQEIIGQTLHDFLQENPNEAKIICSKIVEAA 347

Query: 427 EERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFI 468
             R   RK RE+ R+   +  L LPGKLADC +     +EL++
Sbjct: 348 RAREAARKAREITRRKGVMDGLGLPGKLADCQEKDPALSELYL 390


>gi|310781133|gb|ADP24042.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 396

 Score =  287 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 155/409 (37%), Positives = 229/409 (55%), Gaps = 17/409 (4%)

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133
           LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+ 
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKX-GKPAVEVA 59

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + L
Sbjct: 60  LTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDL 119

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           E   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  E
Sbjct: 120 EVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGKE 177

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
                  E F + GG+ ++++    N+ ++  E    + +        VE  + + +   
Sbjct: 178 -------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNDSYN 227

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
             I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I+
Sbjct: 228 ENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIV 287

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV ++ P+F GQTKTKL + + +  VEN + D    +L +NP  A  ++E   + +  R 
Sbjct: 288 SVKLKNPQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARARE 347

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
             RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSA
Sbjct: 348 AARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSA 396


>gi|296187933|ref|ZP_06856325.1| putative DNA topoisomerase IV subunit B [Clostridium
           carboxidivorans P7]
 gi|296047059|gb|EFG86501.1| putative DNA topoisomerase IV subunit B [Clostridium
           carboxidivorans P7]
          Length = 410

 Score =  287 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 125/408 (30%), Positives = 204/408 (50%), Gaps = 23/408 (5%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YD +++  LE LEPVR+RPGMYIG T  K LHH   E++DN++DE+  G+ +   V L+ 
Sbjct: 11  YDVTALTSLEKLEPVRVRPGMYIGSTGSKGLHHCIWEILDNSIDEISNGFGDKAIVILNK 70

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +  +T++DNGRGIP   HP    KS +E++ T LH GGKF+N  Y+ SGGLHGVG +VVN
Sbjct: 71  DKSVTIIDNGRGIPTGIHP-VKKKSGVEMVFTELHTGGKFNNDVYKTSGGLHGVGAAVVN 129

Query: 164 ALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTRITFRPD 212
           ALS  + V + +   I++Q+F             G P++ L+     +   GT++TF PD
Sbjct: 130 ALSKWVVVEIKQNGHIYTQRFEYAYDKSLKRDMPGTPVTALKIAGNTKE-TGTKVTFLPD 188

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
             +F +   F    + +  Q  A+ +  +       +E            ++   GL  +
Sbjct: 189 KDVFSN-TEFKFDVIDERLQELAFQNKGITLKIIDKREDEVVEKE-----YHSERGLLDF 242

Query: 273 LQTKLENRSLISSEIFTGKTEKK--GTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330
           ++   E+++ + +     + E++  G    +             I SY N I T E GTH
Sbjct: 243 IEYLNESKTALHTPPILFEGEREVNGISMYSEVCVQFTDSTTEYIASYVNNIPTTESGTH 302

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           ESG +  +TR  K++ +      ++      DDL      I+ + I  P F GQTKTKL 
Sbjct: 303 ESGFKAGMTRAFKEWTKKLNLLKEKDKEFEGDDLREGMTAIVRIKITNPIFEGQTKTKLG 362

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           + +A   + +     F  ++  N   A+ ++   I+ +  R + +K +
Sbjct: 363 NTEAYTMMNDLAYTKFSEWIEDNKDTASSIINNAIDAAARREKIKKIK 410


>gi|310781179|gb|ADP24065.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781181|gb|ADP24066.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781185|gb|ADP24068.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781187|gb|ADP24069.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 396

 Score =  287 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 154/409 (37%), Positives = 229/409 (55%), Gaps = 17/409 (4%)

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133
           LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+ 
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVA 59

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + +G+P + L
Sbjct: 60  LTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHGKIYRQIYEKGVPKTDL 119

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           E   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  E
Sbjct: 120 EVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGKE 177

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
                  E F + GG+ ++++    N+ ++  E    + +        VE  + + +   
Sbjct: 178 -------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNDSYN 227

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
             I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I+
Sbjct: 228 ENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIV 287

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV ++ P+F GQTKTKL + + +  VEN + D    +L +NP  A  ++E   + +  R 
Sbjct: 288 SVKLKNPQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARARE 347

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
             RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSA
Sbjct: 348 AARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSA 396


>gi|310780927|gb|ADP23939.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780967|gb|ADP23959.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781007|gb|ADP23979.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 395

 Score =  287 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 154/408 (37%), Positives = 228/408 (55%), Gaps = 17/408 (4%)

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133
           LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+ 
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVA 59

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + L
Sbjct: 60  LTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDL 119

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           E   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  E
Sbjct: 120 EVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGKE 177

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
                  E F + GG+ ++++    N+ ++  E    + +        VE  + + +   
Sbjct: 178 -------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNDSYN 227

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
             I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I+
Sbjct: 228 ENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIV 287

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV ++ P+F GQTKTKL + + +  VEN + D    +L +NP  A  ++E   + +  R 
Sbjct: 288 SVKLKNPQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARARE 347

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
             RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGS
Sbjct: 348 AARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGS 395


>gi|325089309|gb|EGC42619.1| DNA topoisomerase II [Ajellomyces capsulatus H88]
          Length = 1712

 Score =  287 bits (733), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 124/579 (21%), Positives = 231/579 (39%), Gaps = 40/579 (6%)

Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQ-- 176
           E + K       E++   L +   +D++  +++GG +G G  + N  S E  +  A    
Sbjct: 136 EKYQKKEKVYIPELVFGHLLSSSNYDDNQQKVTGGRNGYGAKLCNIFSTEFTLETADSKL 195

Query: 177 NTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD-PKIFGDKAGFDAARLLKMTQSKA 235
              + Q ++  +      K    +    T++TF PD  K   D    D   L+K      
Sbjct: 196 KKKYKQTWTDNMSKMGKPKITDCKGDDYTKVTFIPDFKKFGMDGIDDDFEALVKRR--VY 253

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
            L+G  K     +          +  + Y     K   +   +++S I ++         
Sbjct: 254 DLAGTCKVTVKLNGSRIPIRNFKQYMQMYTNAIKKERGEEASKDKSEIITD--------- 304

Query: 296 GTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI 355
                  E   A  + + +  S+ N+I T  GG+H + +   +   + + A   +NK   
Sbjct: 305 -NPDPRWEIGFAVSDGSFQQVSFVNSIATTSGGSHVNSVADQICNKLVE-AVKKKNKTGA 362

Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415
           ++    +       ++  I  P F  QTK +L +  +Q   +  L D F   +++  +  
Sbjct: 363 TLKPAQIRNHIFVFVNAQIVNPAFTSQTKEQLTTKPSQFGSKCVLSDEFLKKILKTQVME 422

Query: 416 TKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
                 ++  +E++  +  ++    + +                  H   L + EGDSA 
Sbjct: 423 N-----ILHFAEKKADQILKKTDGNRRSRMNNPKLTDANKAGTKEGHHCTLILTEGDSAK 477

Query: 476 GSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           G A   R         V PLRGK+LNV  A  ++I  N +I ++   LG + + +Y +  
Sbjct: 478 GLAMAGRAIVGPDLFGVFPLRGKLLNVRDASVDQISKNAEIQNIKNFLGLQHKKEYTDTK 537

Query: 533 -LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK-HLFLISPPLFRITQG----- 585
            LRY  ++IMTD D DG+HI  LL+ FF      L++    L     P+ ++ +G     
Sbjct: 538 GLRYGHLMIMTDQDHDGSHIKGLLINFFQVAFPSLLKIPQFLIEFITPIVKVWKGDPKNP 597

Query: 586 TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645
           T S      +  +   +E   H K   E   +KGLG       +    D +K  L +  +
Sbjct: 598 TISKVFFTMQEYKTW-QEIHGHDKR-WEKKYYKGLGTSSTDDAEIYFRDLDKH-LKQFHV 654

Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQE--RASFID 682
            +D  + +    + +K    KADER +++++    +F+D
Sbjct: 655 MQDHEA-ELIDLAFSK---KKADERKEWLRQFKPGTFLD 689


>gi|23978288|dbj|BAC21126.1| DNA gyrase B subunit [Pseudanabaena sp. PCC 7403]
          Length = 392

 Score =  287 bits (733), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 145/397 (36%), Positives = 217/397 (54%), Gaps = 11/397 (2%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T  K LHHL  EV+DN++DE + G+ NLI V L  +G +TV DNGRGIPV+ HPK   KS
Sbjct: 1   TGPKGLHHLVFEVVDNSVDEALGGHCNLILVELLADGSVTVSDNGRGIPVDIHPK-TGKS 59

Query: 129 TLEIILTTLHAGGKFDNST-YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187
            LE ++T L AGGKF   + Y++SGGLHGVGISVVNALS+ + V V RQ+ ++  +F RG
Sbjct: 60  ALETVMTKLGAGGKFGGESGYKVSGGLHGVGISVVNALSEWVEVKVWRQSNVYEHRFERG 119

Query: 188 IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247
           +PL  ++        RGT++ F+PD +IF     FD   L    +  AYL+  VK  ++ 
Sbjct: 120 VPLGDMKTSIAESPSRGTQVRFKPDAQIFQTDTVFDFTTLAGRLKELAYLNAGVKIQFTD 179

Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307
            +E       P  E +++ GG++ Y+      +  I  +I   + E+    +  V     
Sbjct: 180 RRE-----EEPRIETYHYDGGIREYVAYMTREKEPIHPDIIYVQGERDNV-QVEVALQWC 233

Query: 308 WCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMIS 365
               N  I  + N I T +GGTH  GL+  LTR +   A   +  +    ++  +++   
Sbjct: 234 VDAYNDNILGFANNIRTIDGGTHLEGLKTVLTRSLNVIARKLKKLKEGDSNLAGENVREG 293

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              ++SV +  PEF GQTKTKL +++ +  V++ + +  + YL  +P  A  +L+  I+ 
Sbjct: 294 LTAVISVKVPNPEFEGQTKTKLGNMEVRGIVDSFVGEVLNEYLEFHPAVAISILDKAIQA 353

Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIA 461
                  R+ RE V RK+A+    LPGKLADCS    
Sbjct: 354 FNAAEAARRARELVRRKSALESSTLPGKLADCSSRDP 390


>gi|310781183|gb|ADP24067.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 396

 Score =  287 bits (733), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 154/409 (37%), Positives = 229/409 (55%), Gaps = 17/409 (4%)

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133
           LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+ 
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVA 59

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + +G+P + L
Sbjct: 60  LTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHGKIYRQIYEKGVPKTDL 119

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           E   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  E
Sbjct: 120 EVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGKE 177

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
                  E F + GG+ ++++    N+ ++  E    + +        VE  + + +   
Sbjct: 178 -------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNDSYN 227

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
             I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I+
Sbjct: 228 ENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIV 287

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV ++ P+F GQTKTKL + + +  VEN + D    +L +NP  A  ++E   + +  R 
Sbjct: 288 SVKLKNPQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSXAKIIVEKATQAARARE 347

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
             RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSA
Sbjct: 348 AARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSA 396


>gi|159117354|ref|XP_001708897.1| DNA topoisomerase II [Giardia lamblia ATCC 50803]
 gi|30692178|gb|AAP33503.1| topoisomerase II [Giardia intestinalis]
 gi|157437011|gb|EDO81223.1| DNA topoisomerase II [Giardia lamblia ATCC 50803]
          Length = 1491

 Score =  287 bits (733), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 145/740 (19%), Positives = 251/740 (33%), Gaps = 115/740 (15%)

Query: 45  DASSIRILEGLEPVRMRPGMYIGGTD----------------------EKALHHLFSEVI 82
             + I+ + G E V +RP MY+G                            L  +F E+I
Sbjct: 3   QKAKIQRVTGSEHVLLRPDMYVGSVSAAETFLWLYEPGQGLYYTKANIVPGLCKIFDEII 62

Query: 83  DNAMDEVIAG-------YANLIEVSLD-GNGFLTVVDNGRGIPVE--NH-PKFPNKSTLE 131
            NA D                I+ S+D  +G ++V ++G    VE   H  +        
Sbjct: 63  VNASDNKQRDSDRSAEHKMTYIKCSVDVASGAISVENDG----VEGLLHFDEKEKMYLPT 118

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           +    L     +D++   ++GG +G G  + N  S +  V +     +F Q ++  +  +
Sbjct: 119 LAFGILMTSSNYDDTEQRVTGGRNGYGAKLTNIFSTKFTVLLQENGQVFEQTWTDNMKNT 178

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKA-----GFDAARLLKMTQSKAYLSGRVKTCWS 246
              + E VR+K+   I F   P               AA +++     A  +  +K   +
Sbjct: 179 KPPRIEDVRDKKKNFIRFSFTPDYMKFGMTSGLDRDHAAYMMRRAVDVAGCNIGLKLIIN 238

Query: 247 CDK----------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS------------ 284
             +           +  +   PE  +FY      T      ++ S +             
Sbjct: 239 GTELKIANFEQYARMVYRSINPEITQFYETSKGDTAQVNTNDSDSDLDIKSAAKAKPKTK 298

Query: 285 --------------------SEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTIL 323
                                  +T    K        +  + + +       S+ N+I 
Sbjct: 299 RTKKTIETNSLLIPVDDLSKPSDWTHDYLKVIPVNKFWDIGLGYTDSGELVQVSFVNSIN 358

Query: 324 TDEGGTHESGLRVALTRGIKKY---AELTQNKRAISIISDDLMISAVGILSVFIREPEFA 380
           T +GGTH   +   +   +      +     K A  +    L    V  +   +  P F 
Sbjct: 359 TTDGGTHVDAILDLIMSQLNDVLIKSFQQDAKNAKKLTRQQLKSCLVLFIRSLVVNPSFD 418

Query: 381 GQTKTKLVSLD----AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS--EERLRRRK 434
            QTK  L +             A        LV+   E   L   + + S  +      K
Sbjct: 419 SQTKISLKTDKAALLRSLGSTQAELATLATQLVKRIQEIRPLWNSLRQASYNQAAKLLTK 478

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG-----GSAKQARNRSNQAV 489
                    +   +L   +A  ++  +  T L + EGDSA      G +     +    V
Sbjct: 479 TDGSKTSQLLGIPKLDDAIAAGTRESSKCT-LILTEGDSAKALAVDGISSIEDGKKYYGV 537

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALG----CRTRSQYREEDLRYEKVIIMTDAD 545
            PLRGK++NV +   +K+ NN +I +L + LG        +Q     LRY  V+IMTD D
Sbjct: 538 FPLRGKVINVRNESIDKVSNNAEITNLKKILGLKQGMDYSTQEARNTLRYGHVMIMTDQD 597

Query: 546 VDGAHIASLLLTFFYQEMYDLIE-QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
            DG+HI  LL+  F      L    K L     P+ R TQ       +     +K  +  
Sbjct: 598 PDGSHIKGLLINLFDTYWNGLARSNKFLDFFITPIVRCTQARNMKTFYTIPEYKKWTQTV 657

Query: 605 KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMG 664
                 K  I+ +KGLG    +  K+           R  +  +  S    + + +K   
Sbjct: 658 --TDLPKWNINYYKGLGSSNTTDAKQYFQQIAN---NRKTLIYNPESASKLKLAFDK--- 709

Query: 665 TKADERFKFI--QERASFID 682
             AD+R  +I   +  +++D
Sbjct: 710 KLADDRKTWISGTDPDTYLD 729


>gi|225555588|gb|EEH03879.1| DNA topoisomerase II [Ajellomyces capsulatus G186AR]
          Length = 1716

 Score =  286 bits (731), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 123/579 (21%), Positives = 230/579 (39%), Gaps = 40/579 (6%)

Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQ-- 176
           E + K       E++   L +   +D++  +++GG +G G  + N  S +  +  A    
Sbjct: 136 EKYQKKEKVYIPELVFGHLLSSSNYDDNQQKVTGGRNGYGAKLCNIFSTQFTLETADSKL 195

Query: 177 NTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD-PKIFGDKAGFDAARLLKMTQSKA 235
              + Q ++  +      K    +    T++TF PD  K   D    D   L+K      
Sbjct: 196 KKKYKQTWTDNMSKMGKPKITDCKGDDYTKVTFIPDFKKFGMDGIDDDFEALVKRR--VY 253

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
            L+G  K     +          +  + Y     K   +   +++S I ++         
Sbjct: 254 DLAGTCKVNVKLNGSRIPIRNFKQYMQMYTNAIKKERGEEAAKDKSEIITD--------- 304

Query: 296 GTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI 355
                  E   A  + + +  S+ N+I T  GG+H + +   +   +   A   +NK   
Sbjct: 305 -NPDPRWEIGFAVSDGSFQQVSFVNSIATTSGGSHVNSVADQICNKLVD-AVKKKNKTGA 362

Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415
           ++    +       ++  I  P F  QTK +L +  +Q   +  L D F   +++  +  
Sbjct: 363 TLKPAQIRNHIFVFVNAQIVNPAFTSQTKEQLTTKPSQFGSKCVLSDEFLKKILKTQVME 422

Query: 416 TKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
                 ++  +E++  +  ++    + +                  H   L + EGDSA 
Sbjct: 423 N-----ILHFAEKKADQILKKTDGNRRSRMNNPKLTDANKAGTKEGHHCTLILTEGDSAK 477

Query: 476 GSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           G A   R         V PLRGK+LNV  A  ++I  N +I ++   LG + + +Y +  
Sbjct: 478 GLAMAGRAIVGPDLFGVFPLRGKLLNVRDASVDQISKNAEIQNIKNFLGLQHKKEYTDTK 537

Query: 533 -LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK-HLFLISPPLFRITQG----- 585
            LRY  ++IMTD D DG+HI  LL+ FF      L++    L     P+ ++ +G     
Sbjct: 538 GLRYGHLMIMTDQDHDGSHIKGLLINFFQVAFPSLLKIPQFLIEFITPIVKVWKGDPKNP 597

Query: 586 TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645
           T S      +  +   +E   H K   E   +KGLG       +    D +K  L +  +
Sbjct: 598 TISKVFFTMQEYKTW-QEIHGHDKR-WEKKYYKGLGTSSTDDAEIYFRDLDKH-LKQFHV 654

Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQE--RASFID 682
            +D  + +    + +K    KADER +++++    +F+D
Sbjct: 655 MQDHEA-ELIDLAFSK---KKADERKEWLRQFKPGTFLD 689


>gi|330872226|gb|EGH06375.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 416

 Score =  286 bits (731), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 160/431 (37%), Positives = 235/431 (54%), Gaps = 22/431 (5%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            AN SAS +Y+A +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A
Sbjct: 1   MANPSAS-SYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHA 56

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             ++V L  +  L V D+GRG+PV+ HP+    S +E+ILT LHAGGKF N  Y+ SGGL
Sbjct: 57  RSVQVILHADNSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213
           HGVGISVVNALS ++ V V R    +   F+ G   + L     V +   GT + F PDP
Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVIGTVGKRNTGTSVYFAPDP 175

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F     F  +RL  + ++KA L   +   +       E     EK E+++  GL++YL
Sbjct: 176 KYFDT-PKFSVSRLKHVLKAKAVLCPGLLVSF-------EDKSTNEKVEWHYEDGLRSYL 227

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHE 331
           Q  + +   +  E F G        +  V+WA+ W  E  +    SY N I T +GGTH 
Sbjct: 228 QDSVSDFLRLPDEPFCGSFAGN---KEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHV 284

Query: 332 SGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           +GLR  L   ++++ E      R + +  +D+      +LS+ ++EP+F+GQTK +L S 
Sbjct: 285 NGLRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSR 344

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
           +A   V   ++D F  +L  +     +L +  I  +  RL+    ++V RK   +   LP
Sbjct: 345 EAAAFVSGVVKDAFSLWLNTHSELGLQLADLAINNAGRRLK--ASKKVERKRITQGPALP 402

Query: 451 GKLADCSQNIA 461
           GKLADC+    
Sbjct: 403 GKLADCAGQDP 413


>gi|282599154|ref|YP_003359071.1| gp60plus39 DNA topoisomerase subunit [Deftia phage phiW-14]
 gi|257219224|gb|ACV50239.1| gp60plus39 DNA topoisomerase subunit [Deftia phage phiW-14]
          Length = 648

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 134/666 (20%), Positives = 254/666 (38%), Gaps = 82/666 (12%)

Query: 45  DASSIRILEGLEPVRMRPGMYIGGTDE-----------------------KALHHLFSEV 81
           D S  ++L   + +R+RPG Y+G  +                         A   LF E+
Sbjct: 24  DVSKYKMLSERDHIRIRPGRYLGDINTSLVKDSWTVNEQGQVERRDVQQNPAFTKLFDEI 83

Query: 82  IDNAMDEVI---AGYANLIEVSLDGN-GFLTVVDNGRGIPV-----ENHPKFPNKSTLEI 132
           I N+ D  +     + N+I V      G ++V DNG GIPV     +   +       ++
Sbjct: 84  ITNSADFSLTADGKHLNIIRVDYSREHGCISVYDNG-GIPVVETIVDREGQPTKLWIPDM 142

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
           I   L +G  F++     S G +G G ++VN  S    V        FS  +  G+    
Sbjct: 143 IFGFLRSGSNFNDEADSESAGQNGEGSTLVNVFSSRFDVETCDGKNKFSITYLDGMANKT 202

Query: 193 LEKKEKVRNKR-GTRITFRPDPKIFGD--KAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
             +    +     TRIT+ P+  I G   +  +    L +     A  +  ++       
Sbjct: 203 APEVVAAQGATPFTRITYFPEWSIMGMTGQEDWIEDTLRRRCLEVAACNTHIRV------ 256

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
                          +  G    ++   +  +++     +    K        + A++  
Sbjct: 257 ---------------YYNGKPVNVKKFGDFAAMLDPVCVSESAPK-------WDVALSLS 294

Query: 310 EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGI 369
           +   +  SY N+ LT  GGTH + +     + + +     ++K    I   +++      
Sbjct: 295 KNGFKHYSYVNSTLTFVGGTHINHVMD---KIVAEVRAHIESKTKQDIKPAEILNQFQLT 351

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           ++  I  P ++ QTK  L++  +   V+ +    F   ++ +P+     L    ER +  
Sbjct: 352 VAARINNPRYSSQTKENLITPVSSYNVKYSPSKEFIKAIIDSPMMKK--LLEWAERRKAV 409

Query: 430 LRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
              ++  +  +           K    +        LF+ EGDSA    + A+   +  +
Sbjct: 410 QDIKEAEKEIQDARKASFHHIPKYRPATNKNKAENILFVAEGDSALKPLQAAKKP-HHGL 468

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549
            PLRGK  NV       +   ++  DL+Q LG     Q+  + +RY  +++ TDAD+DGA
Sbjct: 469 FPLRGKPDNVFDKTIRHLAKQKEFQDLIQILGLDLH-QFNSDTIRYSALVVATDADLDGA 527

Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK 609
           HI  LL   F++    LI++  L  +  P+  + QG +++    E+  +        +  
Sbjct: 528 HIRGLLTVAFWRFWRPLIDEGFLRFLVTPIITVKQGKETIEFFTEQEYEDWRA---ANPT 584

Query: 610 GKIEISRFKGLGEMLASQLKETAM-DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKAD 668
            K     +KGLG   A++  E  M D      ++         + +   + +    +KAD
Sbjct: 585 AKYTRKYYKGLG-SWATEDMERFMNDPKYMVKVQ---PLTDEDVDNLVLAFDP---SKAD 637

Query: 669 ERFKFI 674
            R  ++
Sbjct: 638 ARKSWL 643


>gi|165968978|gb|ABY76045.1| topoisomerase IV subunit ParE [Parachlamydia acanthamoebae]
          Length = 495

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 155/546 (28%), Positives = 256/546 (46%), Gaps = 58/546 (10%)

Query: 105 GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNA 164
           G ++V D GRGIP+           +   ++ ++ G K+++  ++ S GL+GVG   VNA
Sbjct: 1   GLISVRDFGRGIPLGK---------VIDCVSQINTGAKYNDDVFQFSVGLNGVGTKAVNA 51

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LS    V   R+       FS+G  +   EK +K     GT + F PD +IF     F+ 
Sbjct: 52  LSSHFLVRSHREGKSMEAVFSQGKLIR--EKSQKTSEPDGTYVEFIPDKEIFKKFR-FEP 108

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             + K     AYL+  +   ++     +E              GL   L  ++    L  
Sbjct: 109 EYIQKRLWHYAYLNTGLILEYNGQDIYSE-------------NGLLDLLNEEVTEDRLYE 155

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
              + GK          +E+A    +       S+ N   T +GGTH S  R  + +G+ 
Sbjct: 156 PLYYRGK---------LLEFAFLHTQSYGESYFSFVNGQYTSDGGTHLSAFREGILKGVN 206

Query: 344 KYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDP 403
           +Y+     K+  +    DL    VG ++V I++P F  QTK KL + + +  +   ++D 
Sbjct: 207 EYS-----KK--NFQGVDLREGIVGTVAVRIKDPVFESQTKNKLGNTELRGPLVQEVKDA 259

Query: 404 FDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHG 463
             + L +N   A  ++E ++   + R      ++  ++   +      KL DC  +    
Sbjct: 260 VVNMLYKNSSTANSIIERIVFNEKLRKELAAVKKEAKEKQKKISFKIPKLRDCKYHAQDK 319

Query: 464 ------TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 T +F+ EGDSA  S   +R+   QAV  LRGK LNV     +++  N+++ +L+
Sbjct: 320 ADVGEKTMIFLTEGDSASASIVASRDPLTQAVFSLRGKPLNVHGMKIDQLYKNEEMFNLM 379

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            AL          E+LRY+KVI+ TDADVDG HI +LL+TFF      L+   HLF++  
Sbjct: 380 SALNIE----DDIENLRYQKVILATDADVDGMHIRNLLITFFLTYFEGLVLNGHLFILET 435

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PLF++    K++Y + EE + K +++ KK     IE++RFKGLGE+  ++ K+       
Sbjct: 436 PLFKVRNREKTLYCYSEEERDKAIKQLKK----GIEVTRFKGLGEISPNEFKQFIG--KD 489

Query: 638 RTLLRV 643
             L+ V
Sbjct: 490 IRLIPV 495


>gi|165968980|gb|ABY76046.1| topoisomerase IV subunit ParE [Parachlamydia acanthamoebae]
          Length = 494

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 154/534 (28%), Positives = 254/534 (47%), Gaps = 56/534 (10%)

Query: 105 GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNA 164
           G ++V D GRGIP+           +   ++ ++ G K+++  ++ S GL+GVG   VNA
Sbjct: 1   GLISVRDFGRGIPLGK---------VIDCVSQINTGAKYNDDVFQFSVGLNGVGTKAVNA 51

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LS    V   R+       FS+G  +   EK +K     GT + F PD +IF     F+ 
Sbjct: 52  LSSHFLVRSHREGKSMEAVFSQGKLIR--EKSQKTSEPDGTYVEFIPDKEIFKKYR-FEP 108

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             + K     AYL+  +   ++     +E              GL   L  ++    L  
Sbjct: 109 EYIQKRLWHYAYLNTGLILEYNGQDIYSE-------------NGLLDLLNEEVTEDRLYE 155

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
              + GK          +E+A    +       S+ N   T +GGTH S  R  + +G+ 
Sbjct: 156 PLYYRGK---------LLEFAFLHTQSYGESYFSFVNGQYTSDGGTHLSAFREGILKGVN 206

Query: 344 KYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDP 403
           +Y+     K+  +    DL    VG ++V I++P F  QTK KL + + +  +   ++D 
Sbjct: 207 EYS-----KK--NFQGVDLREGIVGTVAVRIKDPVFESQTKNKLGNTELRGPLVQEVKDA 259

Query: 404 FDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHG 463
             + L +NP  A  ++E ++   + R      ++  ++   +      KL DC  +    
Sbjct: 260 VVNMLYKNPSTANSIIERIVFNEKLRKELAAVKKEAKEKQKKISFKIPKLRDCKYHAQDK 319

Query: 464 ------TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 T +F+ EGDSA  S   +R+   QAV  LRGK LNV     +++  N+++ +L+
Sbjct: 320 ADVGEKTMIFLTEGDSASASIVASRDPLTQAVFSLRGKPLNVHGMKIDQLYKNEEMFNLM 379

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            AL          E+LRY+KVI+ TDADVDG HI +LL+TFF      L+   HLF++  
Sbjct: 380 SALNIE----DDIENLRYQKVILATDADVDGMHIRNLLITFFLTYFEGLVLNGHLFILET 435

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           PLF++    K++Y + EE + K +++ KK     IE++RFKGLGE+  ++ K+ 
Sbjct: 436 PLFKVRNREKTLYCYSEEERDKAIKQLKK----GIEVTRFKGLGEISPNEFKQF 485


>gi|18916447|dbj|BAB85513.1| DNA gyrase subunit B [Bradyrhizobium japonicum]
          Length = 374

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 131/359 (36%), Positives = 200/359 (55%), Gaps = 12/359 (3%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DNA+DE +AG+A  ++V L+ +  +TV D+GRGIPV+ H K   
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHATRVDVVLNADNSVTVRDDGRGIPVDIH-KGEG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALS +L + + R +     +F+ 
Sbjct: 60  ISAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAH 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  ++PL+       +RGT +TF   P+ F +   +D A L    +  A+L+  V    S
Sbjct: 120 GDAVAPLKVVGDAPGRRGTEVTFLASPETFKN-IEYDFATLEHRLRELAFLNSGVNIILS 178

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   EK      EE ++ GG++ +++    N+  I       + E  G     VE A+
Sbjct: 179 DMRHAVEKR-----EEMHYSGGVEEFVKYLDRNKKAIVPAPIMVRAEANGI---GVEAAL 230

Query: 307 AWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
            W +   E    + N I   +GGTH +G R ALTR +  YAE    K  I++  DD    
Sbjct: 231 WWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQVNGYAEANAKKEKIALTGDDCREG 290

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
              +LSV + +P+F+ QTK KLVS + +  VEN L +    +  ++P EA  ++  VI+
Sbjct: 291 LTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVLNEALQAWFEEHPSEAKMIVGKVIQ 349


>gi|165968974|gb|ABY76043.1| topoisomerase IV subunit ParE [endosymbiont of Acanthamoeba sp.
           UWC22]
          Length = 495

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 155/546 (28%), Positives = 256/546 (46%), Gaps = 58/546 (10%)

Query: 105 GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNA 164
           G ++V D GRGIP+           +   ++ ++ G K+++  ++ S GL+GVG   VNA
Sbjct: 1   GLISVRDFGRGIPLGK---------VIDCVSQINTGAKYNDDVFQFSVGLNGVGTKAVNA 51

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LS    V   R+       FS+G  +   EK +K     GT + F PD +IF     F+ 
Sbjct: 52  LSSHFLVRSHREGKSMEAVFSQGKLIR--EKSQKTSEPDGTYVEFIPDKEIFKKYR-FEP 108

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             + K     AYL+  +   ++     +E              GL   L  ++    L  
Sbjct: 109 EYIQKRLWHYAYLNTGLILEYNGQDIYSE-------------NGLLDLLNEEVTEDRLYE 155

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
              + GK          +E+A    +       S+ N   T +GGTH S  R  + +G+ 
Sbjct: 156 PLYYRGK---------LLEFAFLHTQSYGESYFSFVNGQYTSDGGTHLSAFREGILKGVN 206

Query: 344 KYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDP 403
           +Y+     K+  +    DL    VG ++V I++P F  QTK KL + + +  +   ++D 
Sbjct: 207 EYS-----KK--NFQGVDLREGIVGTVAVRIKDPVFESQTKNKLGNTELRGPLVQEVKDA 259

Query: 404 FDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHG 463
             + L +N   A  ++E ++   + R      ++  ++   +      KL DC  +    
Sbjct: 260 VVNMLYKNSSTANSIIERIVFNEKLRKELAAVKKEAKEKQKKISFKIPKLRDCKYHAQDK 319

Query: 464 ------TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 T +F+ EGDSA  S   +R+   QAV  LRGK LNV     +++  N+++ +L+
Sbjct: 320 ADVGEKTMIFLTEGDSASASIVASRDPLTQAVFSLRGKPLNVHGMKIDQLYKNEEMFNLM 379

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
            AL          E+LRY+KVI+ TDADVDG HI +LL+TFF      L+   HLF++  
Sbjct: 380 SALNIE----DDIENLRYQKVILATDADVDGMHIRNLLITFFLTYFEGLVLNGHLFILET 435

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637
           PLF++    K++Y + EE + K +++ KK     IE++RFKGLGE+  ++ K+       
Sbjct: 436 PLFKVRNREKTLYCYSEEERDKAIKQLKK----GIEVTRFKGLGEISPNEFKQFIG--KD 489

Query: 638 RTLLRV 643
             L+ V
Sbjct: 490 IRLIPV 495


>gi|167077351|gb|ABZ10897.1| DNA gyrase subunit B [Burkholderia cenocepacia]
          Length = 629

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 167/467 (35%), Positives = 249/467 (53%), Gaps = 29/467 (6%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKVRNKRGTR 206
           +S VNALS  L +TV R       +F RG+             +SP+       N RGT 
Sbjct: 1   VSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVIEVVDGVEVSPMLVTGDTEN-RGTE 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F  DP IFG    +    L K  +  ++L+  V+   +  +   E         F F 
Sbjct: 60  VHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD-------FAFA 111

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+K +++   + +S +   +F    EK G     VE A+ W +     +  + N I   
Sbjct: 112 GGVKGFVEFINKTKSTLHPTVFFANGEKDGV---GVEVAMQWNDSYNENVLCFTNNIPQR 168

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + EP+F+ QT
Sbjct: 169 DGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQT 228

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443
           K KLVS + +  VE  +    + +L++ PI+A  +   ++E +  R   RK RE+ R+  
Sbjct: 229 KDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTRRKG 288

Query: 444 -IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
            +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+LNV  A
Sbjct: 289 VLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKA 348

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
             +K+ +++QI+ LV ALGC    +    + LRY ++IIMTDADVDGAHI +LLLTF Y+
Sbjct: 349 RYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFLYR 408

Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +M D+IE+ ++++  PPL++I  G    Y  D+      +      G
Sbjct: 409 QMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQG 455


>gi|302422958|ref|XP_003009309.1| DNA topoisomerase [Verticillium albo-atrum VaMs.102]
 gi|261352455|gb|EEY14883.1| DNA topoisomerase [Verticillium albo-atrum VaMs.102]
          Length = 1688

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 134/746 (17%), Positives = 247/746 (33%), Gaps = 148/746 (19%)

Query: 2   TDDSIDLFSTLPPQSQGSSEKLKKSGEI----------------PDSPAFA----NQSAS 41
           +DD     S  PP S+   +    S                   P +PA A     ++  
Sbjct: 64  SDDEASGLSNTPPSSKKLKKAPAASKSSGNPLAEIENDSMALDEPSAPAPAVKGTKKTVE 123

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTD-----------------------EKALHHLF 78
           + Y     + L  LE +  RP  YIG  +                          L+ +F
Sbjct: 124 ETY-----QKLTQLEHIVKRPDTYIGSVERTEMPMWVYNKETQLMEFRKVTTVPGLYKIF 178

Query: 79  SEVIDNAMDEVIA------GYANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLE 131
            E++ NA D  +            I+V++D   G +++ +                    
Sbjct: 179 DEILVNAADIKVRREESGEEPVTHIKVNIDREAGQISIEN-------------------- 218

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
                                  +G GI V                      ++  +   
Sbjct: 219 -----------------------NGKGIPVEM------------HKQHGIYTWTDNMSKM 243

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGD--KAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
              K    ++    RITF+PD K F          A L +     A     +K   +   
Sbjct: 244 GKAKITSSKSSDFVRITFKPDFKRFSMEGIDDDLEALLYRRVYDMAGTIKGIKVHLNG-- 301

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
                      +   F G  + Y +   + R+           E         +      
Sbjct: 302 --------TVVKPSAFKGYSEMYAKAIAKERASEEGGEPKVTVEMDKNDNPRWDVGFTVS 353

Query: 310 EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGI 369
           + + +  S+ N I T  GGTH + +   + + + KY +  + K+  ++    +       
Sbjct: 354 DGSFQHISFVNNIATTSGGTHVNYVADQIVQYLTKYLD--KKKKGHALKPQHIRNHIFVF 411

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           ++  I  P F  QTK ++ +  +    +  L + F   +      A+  ++ ++  +E++
Sbjct: 412 INCRIENPSFNSQTKEQMTTKISSFGSKCVLSEAFLKKVA-----ASDAIQNIMSFAEKK 466

Query: 430 LRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR---NRSN 486
             +   +    + +                  H   L + EGDSA   A   R   +   
Sbjct: 467 ADKMMAKSDGNRRSRINNAKLVDANLAGTKRGHECTLILTEGDSAKSLAVAGRAILDPDR 526

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDAD 545
             V PLRGK+LNV  A  E+I  NQ+I ++ Q LG + +  Y +   LRY  ++IM D D
Sbjct: 527 IGVFPLRGKMLNVRDASIEQITKNQEIQNIKQFLGLKHKQNYTDTKGLRYGHLMIMADQD 586

Query: 546 VDGAHIASLLLTFFYQEMYDLIEQK-HLFLISPPLFRITQGT------KSVYAHDEEHKQ 598
            DG+HI  LL+ F   +   L++          P+ ++ QG       K      +   +
Sbjct: 587 HDGSHIKGLLINFLQVQYPSLLQIPDFFREFITPIVKVWQGKNPKNPQKLQAFFTQPQYE 646

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           +  +E  K+   + E   +KGLG       +    + +        +      L     +
Sbjct: 647 EW-KEAHKNEISRWEYKYYKGLGTSSNEDAQVYFTNLDDHLKEFDTMQSSEADL--FDLA 703

Query: 659 INKLMGTKADERFKFIQE--RASFID 682
            +K    KAD R +++      +++D
Sbjct: 704 FSK---KKADARKEWLGNFVPGTYLD 726


>gi|148762481|dbj|BAF63942.1| DNA topoisomerase IV subunit B [Bacillus licheniformis]
          Length = 406

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 148/416 (35%), Positives = 221/416 (53%), Gaps = 24/416 (5%)

Query: 73  ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
            LHHL  E++DN++DEV+AG+ N I V +  +  ++V D GRG+P   H     K T EI
Sbjct: 6   GLHHLVYEIVDNSVDEVLAGHGNHIIVKIHKDNSISVQDRGRGMPTGMHK--LGKPTPEI 63

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR-GIPLS 191
           ILT LHAGGKF    Y+ SGGLHGVG SVVNALS+ L VT+ R   ++ Q+F   G P++
Sbjct: 64  ILTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSEWLTVTIERDGNVYRQRFENGGKPVT 123

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
            L+K    +   GT I F+PDP +F     F+   L +  +  A+L   +K     +++ 
Sbjct: 124 SLDKIGTTKK-TGTLIHFKPDPTMFST-TTFNFETLSERLRESAFLLKGLKIELIDERDQ 181

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
            +       E F +  G++ ++    E +    SE+ + + E  G     V++A  + + 
Sbjct: 182 TK-------ETFLYENGIEAFVAYLNEEKD-ALSEVVSFEGEHNGI---EVDFAFQFNDG 230

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVG 368
               I S+ N + T +GGTHESG + A+TR   +YA       ++  ++   D+      
Sbjct: 231 YSENILSFVNNVRTKDGGTHESGAKTAMTRAFNEYARKVALLKEKDKNLEGTDIREGLSA 290

Query: 369 ILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
           I+SV I E   +F GQTK KL + +A+  V+  + +   ++L +N   AT L++  I+ S
Sbjct: 291 IVSVRIPEELLQFEGQTKGKLGTSEARSAVDAIVSEQLAYFLEENRETATLLVKKAIKAS 350

Query: 427 EERLRRRKQREVNRKTAIRK---LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           + R   RK RE  R    RK     L GKL           EL++VEGDSAGGSAK
Sbjct: 351 QAREAARKAREEARSGKKRKKSEATLSGKLTPAQSRNPSKNELYLVEGDSAGGSAK 406


>gi|310781265|gb|ADP24108.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781269|gb|ADP24110.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781271|gb|ADP24111.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 397

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 154/409 (37%), Positives = 229/409 (55%), Gaps = 17/409 (4%)

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           HHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+ L
Sbjct: 1   HHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVAL 59

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + LE
Sbjct: 60  TMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHGKIYRQIYERGVPKTDLE 119

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
              +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  E 
Sbjct: 120 VIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGKE- 176

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313
                 E F + GG+ ++++    N+ ++  E    + +        VE  + + +    
Sbjct: 177 ------EVFNYEGGIISFVKYLNRNKEVLHEEPIYMEAKNND---YEVEVCMQYNDSYNE 227

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
            I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I+S
Sbjct: 228 NIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVS 287

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V ++ P+F GQTKTKL + + +  VEN + +    +L +NP  A  ++E   + +  R  
Sbjct: 288 VKLKNPQFEGQTKTKLGNSEMRSIVENVVTEKLTAFLEENPSVAKIIVEKATQAARAREA 347

Query: 432 RRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
            RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSAK
Sbjct: 348 ARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAK 396


>gi|148762473|dbj|BAF63938.1| DNA topoisomerase IV subunit B [Bacillus licheniformis]
          Length = 406

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 148/416 (35%), Positives = 221/416 (53%), Gaps = 24/416 (5%)

Query: 73  ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
            LHHL  E++DN++DEV+AG+ N I V +  +  ++V D GRG+P   H     K T EI
Sbjct: 6   GLHHLVYEIVDNSVDEVLAGHGNHIIVKIHKDNSISVQDRGRGMPTGMHK--LGKPTPEI 63

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR-GIPLS 191
           ILT LHAGGKF    Y+ SGGLHGVG SVVNALS+ L VT+ R   ++ Q+F   G P++
Sbjct: 64  ILTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSEWLTVTIERDGNVYRQRFENGGKPVT 123

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
            L+K    +   GT I F+PDP +F     F+   L +  +  A+L   +K     +++ 
Sbjct: 124 SLDKIGTTKK-TGTLIHFKPDPTMFST-TTFNFETLSERLRESAFLLKGLKIELIDERDQ 181

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
            +       E F +  G++ ++    E +    SE+ + + E  G     V++A  + + 
Sbjct: 182 TK-------ETFLYENGIEAFVAYLNEEKD-ALSEVVSFEGEHNGI---EVDFAFQFNDG 230

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVG 368
               I S+ N + T +GGTHESG + A+TR   +YA       ++  ++   D+      
Sbjct: 231 YSENILSFVNNVRTKDGGTHESGAKTAMTRAFNEYARKVALLKEKDKNLEGTDIREGLSA 290

Query: 369 ILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
           I+SV I E   +F GQTK KL + +A+  V+  + +   ++L +N   AT L++  I+ S
Sbjct: 291 IVSVRIPEELLQFEGQTKGKLGTSEARSAVDAIVSEQLAYFLEENRETATLLVKKAIKAS 350

Query: 427 EERLRRRKQREVNRKTAIRK---LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           + R   RK RE  R    RK     L GKL           EL++VEGDSAGGSAK
Sbjct: 351 QAREAARKAREEARSGKKRKKSEATLSGKLTPAQSRNPSKNELYLVEGDSAGGSAK 406


>gi|310781267|gb|ADP24109.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781273|gb|ADP24112.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781275|gb|ADP24113.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 395

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 153/408 (37%), Positives = 228/408 (55%), Gaps = 17/408 (4%)

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           HHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+ L
Sbjct: 1   HHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVAL 59

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + LE
Sbjct: 60  TMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHGKIYRQIYERGVPKTDLE 119

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
              +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  E 
Sbjct: 120 VIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGKE- 176

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313
                 E F + GG+ ++++    N+ ++  E    + +        VE  + + +    
Sbjct: 177 ------EVFNYEGGIISFVKYLNRNKEVLHEEPIYMEAKNND---YEVEVCMQYNDSYNE 227

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
            I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I+S
Sbjct: 228 NIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVS 287

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V ++ P+F GQTKTKL + + +  VEN + +    +L +NP  A  ++E   + +  R  
Sbjct: 288 VKLKNPQFEGQTKTKLGNSEMRSIVENVVTEKLTAFLEENPSVAKIIVEKATQAARAREA 347

Query: 432 RRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
            RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSA
Sbjct: 348 ARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSA 395


>gi|295979565|dbj|BAJ07455.1| DNA gyrase subunit B [Photobacterium indicum]
          Length = 393

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 136/404 (33%), Positives = 224/404 (55%), Gaps = 16/404 (3%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DN++DE +AG+   I +++  +  ++V D+GRGIP + H +   
Sbjct: 1   DTDDGTGLHHMVFEVVDNSIDEALAGHCEDIIITIHEDNSVSVSDDGRGIPTDIHEE-EG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R  +I  Q +  
Sbjct: 60  VSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRHGSIHHQIYHH 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G+P  PLE   +  +K GTRI F P    F +   F    L K  +  ++L+  V     
Sbjct: 120 GVPDKPLEAIGET-DKTGTRIRFWPSEDTFTNVV-FHYEILAKRLRELSFLNSGVSIRLI 177

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
            ++E        +++ F + GG+K +++    N++ I S++F    E++     +VE A+
Sbjct: 178 DERE------EGKQDHFMYEGGIKAFVEHLNRNKTPIHSKVFHFDFERED--GISVEVAM 229

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W +     I  + N I   +GG+H +G R ALTR +  + +      K   S   DD  
Sbjct: 230 QWNDGFQEGIYCFTNNIPQRDGGSHLAGFRGALTRTLNTFMDKEGYSKKEKTSTSGDDAR 289

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +L++NP +A  +   +I
Sbjct: 290 EGLTAVVSVKVPDPKFSSQTKDKLVSSEVKPAVESAMNEKLSEFLLENPSDAKIVCSKII 349

Query: 424 ERS-EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
           + S      R+ +    RK A+    LPGKLADC +     +EL
Sbjct: 350 DASRAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSEL 393


>gi|148762423|dbj|BAF63913.1| DNA gyrase subunit B [Virgibacillus proomii]
          Length = 404

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 152/411 (36%), Positives = 224/411 (54%), Gaps = 16/411 (3%)

Query: 73  ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
            LHHL  E+IDN++DE +AGY + IEV ++ +  +TV DNGRGIPV+   K   +  LE+
Sbjct: 6   GLHHLVWEIIDNSIDEALAGYCDRIEVIVEKDNSITVKDNGRGIPVDIQKK-TGRPALEV 64

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
           I+T LHAGGKF    Y++SGGLHGVG SVVNALS +L V V R N I    F RG+P   
Sbjct: 65  IMTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSSKLEVYVHRDNKIHYLAFERGVPQGE 124

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
           ++   K  +  GT + F PD  IF + A F+   L +  +  A+L+  +       +   
Sbjct: 125 IQIVGKT-DITGTIVHFVPDTTIFTETAEFNFDILSQRLRELAFLNKGITIALEDKRTDR 183

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
           E         +++ GG+ +Y++   +N+ ++    F  + E +G    TVE AI + +  
Sbjct: 184 E------PVSYHYEGGISSYVEFINQNKEVLHEP-FYAEGEAQGI---TVEIAIQYNDGF 233

Query: 313 PEITS-YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGI 369
                 + N I T EGGTHESG +  LTR I  YA      +    ++  +D+      I
Sbjct: 234 TSNLYSFANNIHTYEGGTHESGFKTGLTRVINDYARKNNLFKENDPNLSGEDVREGLTAI 293

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEE 428
           +SV    P+F GQTKTKL + + +   ++   + F  +L +NP  A  +++  ++     
Sbjct: 294 VSVKHPNPQFEGQTKTKLGNSEVRTVTDSVFSELFSKFLFENPDVAKIIVDKGLMASRAR 353

Query: 429 RLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
              ++ +    RK A+    LPGKLADCS   A  +EL+IVEGDSAGGSAK
Sbjct: 354 AAAKKARELTRRKGALEISNLPGKLADCSSKDASISELYIVEGDSAGGSAK 404


>gi|19909601|dbj|BAB86996.1| DNA gyrase subunit B [Halomonas pacifica]
          Length = 378

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 140/390 (35%), Positives = 211/390 (54%), Gaps = 17/390 (4%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
           D   LHH+  E++DN++DE +AG+ + I V +  +  +TV DNGRGIP + H +    S 
Sbjct: 2   DGTGLHHMVFELVDNSIDEALAGHCSEIRVVIHPDESITVSDNGRGIPTDIHEE-EGVSA 60

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+EL +TV R   +  Q +  G+P
Sbjct: 61  AEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELKLTVWRAGQVHEQIYRHGVP 120

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            +PL    K   + GTR+ FRP P+ F +   F    L K  +  ++L+  V      ++
Sbjct: 121 EAPLSVVGKT-EQSGTRVHFRPSPETFAN-IEFHYDILAKRLRELSFLNSGVAIRLIDER 178

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
              E       E F++ GGLK ++     N+S ++S        + G     VE A+ W 
Sbjct: 179 SGKE-------ELFHYEGGLKAFVNHLNTNKSTLNSVFHFNVEREDGV---GVEVAMQWN 228

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISA 366
           +     I  Y N I   +GGTH +G R ALTR +  Y E      K  ++   DD     
Sbjct: 229 DTFAENIFCYTNNIPQRDGGTHLAGFRAALTRTLNGYIEAEGLLKKAKVNTSGDDAREGL 288

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-R 425
             I+SV + +P+F+ QTK KLVS + +  VE  +   F  YL+++P EA  ++  +++  
Sbjct: 289 TAIISVKVPDPKFSSQTKEKLVSSEVKTAVEQEMGRLFSEYLIEHPNEAKAVVNKMLDAA 348

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
                 R+ +    RK A+    LPGKLAD
Sbjct: 349 RAREAARKARDMTRRKGALDNASLPGKLAD 378


>gi|295979463|dbj|BAJ07404.1| DNA gyrase subunit B [Acinetobacter calcoaceticus subsp. anitratus]
          Length = 380

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 135/393 (34%), Positives = 210/393 (53%), Gaps = 18/393 (4%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DNA+DE +AG+ + I V++  +  ++V DNGRGIP + HP+   
Sbjct: 1   DTDDGTGLHHMVFEVVDNAIDEALAGHCDEIIVTIHEDESVSVSDNGRGIPTDIHPE-EG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            S  E+ILT LHAGGKFD+++Y++SGGLHGVG+SVVNALS +LH+T+ R   I  Q++  
Sbjct: 60  VSAAEVILTILHAGGKFDDNSYKVSGGLHGVGVSVVNALSSKLHLTIYRAGQIHEQEYHH 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G P  PL    +  +  GT + F P  + F     F+   L +  +  ++L+  V+    
Sbjct: 120 GDPQYPLRVIGET-DNTGTTVRFWPSAETFSQTI-FNVEILARRLRELSFLNAGVRIVLR 177

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
            ++   E         + + GGL  +++   E ++ ++           G     VE A+
Sbjct: 178 DERINLE-------HVYDYEGGLSEFVKYINEGKNHLNEIFHFTADADNGI---AVEVAL 227

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W +     +  + N I   +GGTH +G R ALTRG+ +Y E      K  +++  DD  
Sbjct: 228 QWNDSYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAR 287

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                I+SV + +P+F+ QTK KLVS + +  VE A+   F  YL++NP  A  +   +I
Sbjct: 288 EGLTAIISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKII 347

Query: 424 -ERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
                    R+ +    RK+A+    LPGKLAD
Sbjct: 348 DAARARDAARKAREMTRRKSALDIAGLPGKLAD 380


>gi|310781281|gb|ADP24116.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 393

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 151/406 (37%), Positives = 226/406 (55%), Gaps = 17/406 (4%)

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133
           LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+ 
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVA 59

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + L
Sbjct: 60  LTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHGKIYRQIYERGVPKTDL 119

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           E   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  E
Sbjct: 120 EVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGKE 177

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
                  E F + GG+ ++++    N+ ++  E    + +        VE  + + +   
Sbjct: 178 -------EVFNYEGGIISFVKYLNRNKEVLHEEPIYMEAKNND---YEVEVCMQYNDSYN 227

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
             I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I+
Sbjct: 228 ENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIV 287

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV ++ P+F GQTKTKL + + +  VEN + +    +L +NP  A  ++E   + +  R 
Sbjct: 288 SVKLKNPQFEGQTKTKLGNSEMRSIVENVVTEKLTAFLEENPSVAKIIVEKATQAARARE 347

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
             RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAG
Sbjct: 348 AARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAG 393


>gi|324039416|dbj|BAJ78461.1| DNA gyrase subunit B [Alcanivorax sp. 3-1-1]
          Length = 389

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 142/402 (35%), Positives = 218/402 (54%), Gaps = 18/402 (4%)

Query: 73  ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
            LHH+  EV+DN++DE +AG+ + I+V +  +  +++ DNGRGIP E H +    S  E+
Sbjct: 1   GLHHMVFEVVDNSIDEALAGFCSEIKVVIHPDESMSIQDNGRGIPTEMHEE-EGVSAAEV 59

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
           I+T LHAGGKFD++TY++SGGLHGVG+SVVNALS+EL +T+ R   +  Q ++ G+P  P
Sbjct: 60  IMTVLHAGGKFDDNTYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYNHGVPAKP 119

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
           LE      +  GT + FRP P+ F +   F    L K  +  ++L+  V+     ++   
Sbjct: 120 LEVVG-TTDSSGTAVHFRPSPETFSN-IKFHYDILAKRLRELSFLNSGVRIHLMDERSGD 177

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEE 311
           E       + F + GGL  ++     N++ ++       + E+ G     VE A+ W + 
Sbjct: 178 E-------DVFEYEGGLSAFVSYLNTNKTPLNQVFHFNYEREEDGI---AVEVAMQWNDS 227

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVG 368
               I  + N I   +GGTH +G R ALTR +  Y +      K   S   DD       
Sbjct: 228 YQENIFCFTNNIPQRDGGTHLAGFRAALTRTLNSYMDKEGFLKKEKASPSGDDAREGLTA 287

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSE 427
           ++SV + +P+F+ QTK KLVS + +  VE  + D F  YL++NP EA  +++ +I     
Sbjct: 288 VISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGDLFQDYLLENPGEARSIVQKIIDAARA 347

Query: 428 ERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
               R+ +    RK A+    LPGKLADC Q     +EL+IV
Sbjct: 348 RDAARKAREMTRRKGALDIAGLPGKLADCQQKDPALSELYIV 389


>gi|19909649|dbj|BAB87020.1| DNA gyrase subunit B [Thermotoga neapolitana DSM 4359]
          Length = 393

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 146/403 (36%), Positives = 219/403 (54%), Gaps = 17/403 (4%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
            ++ LHHL  EV+DN++DE +AGY + I+V+L  +G + V DNGRGIPV+ HP+   +S 
Sbjct: 1   GKRGLHHLVYEVVDNSVDESLAGYCDWIKVTLHEDGSVEVEDNGRGIPVDVHPE-EGRSA 59

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
           LE++ T LHAGGKF   +Y+ISGGLHGVG+SVVNALS+ L V V R   I+ Q++ RG P
Sbjct: 60  LEVVFTVLHAGGKFSKDSYKISGGLHGVGVSVVNALSEWLEVRVYRDGKIYRQRYERGKP 119

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
           ++ +E   +  +K GT + F+PDP IF +   FD   L    +  A+L   +K  +    
Sbjct: 120 VTLVEVIGET-DKHGTVVRFKPDPLIFSE-TEFDPDILEHRLREIAFLVPGLKIEFEDRI 177

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----KKGTHRGTVEWA 305
              +K        F F GGLK +++     + ++   I+  +TE    K       VE A
Sbjct: 178 NNEKKT-------FKFDGGLKEFVKYLNRGKKVLHDVIYLKRTEKVKVKDKEDEVIVEIA 230

Query: 306 IAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLM 363
             + +    EI S+ NTI T +GGTH +  +  LTR + +Y       K   S   DD+ 
Sbjct: 231 FQYTDSYSEEILSFANTIKTVDGGTHVTAFKTTLTRLMNEYGRKHNFLKNGDSFQGDDVR 290

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                ++SV+++ PEF GQTK+KL + + +  V  A+R+        +P     +L  ++
Sbjct: 291 EGLTAVISVYVKNPEFEGQTKSKLGNEEVKEAVNRAMREELKKIFDASPDLVRTILSKIM 350

Query: 424 ERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTE 465
              + R   R+ RE+  RK  ++    PGKLADCS      TE
Sbjct: 351 STKQAREAARRAREMVRRKNVLQSTTHPGKLADCSSTDRENTE 393


>gi|310781035|gb|ADP23993.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781039|gb|ADP23995.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781041|gb|ADP23996.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 397

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 155/409 (37%), Positives = 229/409 (55%), Gaps = 17/409 (4%)

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           HHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+ L
Sbjct: 1   HHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVAL 59

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + LE
Sbjct: 60  TMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDLE 119

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
              +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  E 
Sbjct: 120 VIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGKE- 176

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313
                 E F + GG+ ++++    N+ ++  E    + +        VE  + + +    
Sbjct: 177 ------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNDSYNE 227

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
            I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I+S
Sbjct: 228 NIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVS 287

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V ++ P+F GQTKTKL + + +  VEN + D    +L +NP  A  ++E   + +  R  
Sbjct: 288 VKLKNPQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREA 347

Query: 432 RRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
            RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSAK
Sbjct: 348 ARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAK 396


>gi|310781031|gb|ADP23991.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781045|gb|ADP23998.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781047|gb|ADP23999.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781049|gb|ADP24000.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781055|gb|ADP24003.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781057|gb|ADP24004.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781059|gb|ADP24005.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781061|gb|ADP24006.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781063|gb|ADP24007.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781065|gb|ADP24008.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781069|gb|ADP24010.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781071|gb|ADP24011.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781073|gb|ADP24012.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781075|gb|ADP24013.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 395

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 154/408 (37%), Positives = 228/408 (55%), Gaps = 17/408 (4%)

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           HHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+ L
Sbjct: 1   HHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVAL 59

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + LE
Sbjct: 60  TMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDLE 119

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
              +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  E 
Sbjct: 120 VIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGKE- 176

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313
                 E F + GG+ ++++    N+ ++  E    + +        VE  + + +    
Sbjct: 177 ------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNDSYNE 227

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
            I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I+S
Sbjct: 228 NIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVS 287

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V ++ P+F GQTKTKL + + +  VEN + D    +L +NP  A  ++E   + +  R  
Sbjct: 288 VKLKNPQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREA 347

Query: 432 RRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
            RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSA
Sbjct: 348 ARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSA 395


>gi|310781237|gb|ADP24094.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 395

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 153/408 (37%), Positives = 227/408 (55%), Gaps = 17/408 (4%)

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           HHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+ L
Sbjct: 1   HHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVAL 59

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + LE
Sbjct: 60  TMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDLE 119

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
              +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  E 
Sbjct: 120 VIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGKE- 176

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313
                 E F + GG+ ++++    N+ ++  E    + +        VE  + +      
Sbjct: 177 ------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNNSYNE 227

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
            I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I+S
Sbjct: 228 NIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVS 287

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V ++ P+F GQTKTKL + + +  VEN + +    +L +NP  A  ++E   + +  R  
Sbjct: 288 VKLKNPQFEGQTKTKLGNSEMRSIVENVVTEKLTAFLEENPSVAKIIVEKATQAARAREA 347

Query: 432 RRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
            RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSA
Sbjct: 348 ARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSA 395


>gi|310781037|gb|ADP23994.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 396

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 155/409 (37%), Positives = 229/409 (55%), Gaps = 17/409 (4%)

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           HHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+ L
Sbjct: 1   HHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVAL 59

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + LE
Sbjct: 60  TMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDLE 119

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
              +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  E 
Sbjct: 120 VIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGKE- 176

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313
                 E F + GG+ ++++    N+ ++  E    + +        VE  + + +    
Sbjct: 177 ------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNDSYNE 227

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
            I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I+S
Sbjct: 228 NIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVS 287

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V ++ P+F GQTKTKL + + +  VEN + D    +L +NP  A  ++E   + +  R  
Sbjct: 288 VKLKNPQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREA 347

Query: 432 RRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
            RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSAK
Sbjct: 348 ARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAK 396


>gi|310781191|gb|ADP24071.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781209|gb|ADP24080.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781213|gb|ADP24082.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 395

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 154/408 (37%), Positives = 228/408 (55%), Gaps = 17/408 (4%)

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           HHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+ L
Sbjct: 1   HHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVAL 59

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + LE
Sbjct: 60  TMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHGKIYRQIYERGVPKTDLE 119

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
              +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  E 
Sbjct: 120 VIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGKE- 176

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313
                 E F + GG+ ++++    N+ ++  E    + +        VE  + + +    
Sbjct: 177 ------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNDSYNE 227

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
            I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I+S
Sbjct: 228 NIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVS 287

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V ++ P+F GQTKTKL + + +  VEN + D    +L +NP  A  ++E   + +  R  
Sbjct: 288 VKLKNPQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREA 347

Query: 432 RRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
            RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSA
Sbjct: 348 ARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSA 395


>gi|310781225|gb|ADP24088.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781229|gb|ADP24090.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781231|gb|ADP24091.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781233|gb|ADP24092.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 397

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 154/409 (37%), Positives = 228/409 (55%), Gaps = 17/409 (4%)

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           HHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+ L
Sbjct: 1   HHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVAL 59

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + LE
Sbjct: 60  TMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDLE 119

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
              +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  E 
Sbjct: 120 VIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGKE- 176

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313
                 E F + GG+ ++++    N+ ++  E    + +        VE  + +      
Sbjct: 177 ------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNNSYNE 227

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
            I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I+S
Sbjct: 228 NIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVS 287

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V ++ P+F GQTKTKL + + +  VEN + +    +L +NP  A  ++E   + +  R  
Sbjct: 288 VKLKNPQFEGQTKTKLGNSEMRSIVENVVTEKLTAFLEENPSVAKIIVEKATQAARAREA 347

Query: 432 RRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
            RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSAK
Sbjct: 348 ARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAK 396


>gi|310780909|gb|ADP23930.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780911|gb|ADP23931.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780913|gb|ADP23932.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780915|gb|ADP23933.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780917|gb|ADP23934.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780919|gb|ADP23935.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780921|gb|ADP23936.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780923|gb|ADP23937.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780925|gb|ADP23938.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780949|gb|ADP23950.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780951|gb|ADP23951.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780953|gb|ADP23952.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780955|gb|ADP23953.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780957|gb|ADP23954.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780959|gb|ADP23955.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780961|gb|ADP23956.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780963|gb|ADP23957.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780965|gb|ADP23958.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781001|gb|ADP23976.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781003|gb|ADP23977.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 393

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 152/406 (37%), Positives = 226/406 (55%), Gaps = 17/406 (4%)

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133
           LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+ 
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVA 59

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + L
Sbjct: 60  LTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDL 119

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           E   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  E
Sbjct: 120 EVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGKE 177

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
                  E F + GG+ ++++    N+ ++  E    + +        VE  + + +   
Sbjct: 178 -------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNDSYN 227

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
             I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I+
Sbjct: 228 ENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIV 287

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV ++ P+F GQTKTKL + + +  VEN + D    +L +NP  A  ++E   + +  R 
Sbjct: 288 SVKLKNPQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARARE 347

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
             RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAG
Sbjct: 348 AARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAG 393


>gi|310781189|gb|ADP24070.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 396

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 155/409 (37%), Positives = 229/409 (55%), Gaps = 17/409 (4%)

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           HHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+ L
Sbjct: 1   HHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVAL 59

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + LE
Sbjct: 60  TMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHGKIYRQIYERGVPKTDLE 119

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
              +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  E 
Sbjct: 120 VIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGKE- 176

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313
                 E F + GG+ ++++    N+ ++  E    + +        VE  + + +    
Sbjct: 177 ------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNDSYNE 227

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
            I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I+S
Sbjct: 228 NIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVS 287

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V ++ P+F GQTKTKL + + +  VEN + D    +L +NP  A  ++E   + +  R  
Sbjct: 288 VKLKNPQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREA 347

Query: 432 RRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
            RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSAK
Sbjct: 348 ARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAK 396


>gi|310781249|gb|ADP24100.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781253|gb|ADP24102.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781255|gb|ADP24103.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781257|gb|ADP24104.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 393

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 151/406 (37%), Positives = 225/406 (55%), Gaps = 17/406 (4%)

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133
           LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+ 
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVA 59

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + L
Sbjct: 60  LTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDL 119

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           E   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  E
Sbjct: 120 EVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGKE 177

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
                  E F + GG+ ++++    N+ ++  E    + +        VE  + +     
Sbjct: 178 -------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNNSYN 227

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
             I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I+
Sbjct: 228 ENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIV 287

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV ++ P+F GQTKTKL + + +  VEN + +    +L +NP  A  ++E   + +  R 
Sbjct: 288 SVKLKNPQFEGQTKTKLGNSEMRSIVENVVTEKLTAFLEENPSVAKIIVEKATQAARARE 347

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
             RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAG
Sbjct: 348 AARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAG 393


>gi|310781203|gb|ADP24077.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 393

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 152/406 (37%), Positives = 226/406 (55%), Gaps = 17/406 (4%)

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133
           LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+ 
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVA 59

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + L
Sbjct: 60  LTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHGKIYRQIYERGVPKTDL 119

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           E   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  E
Sbjct: 120 EVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGKE 177

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
                  E F + GG+ ++++    N+ ++  E    + +        VE  + + +   
Sbjct: 178 -------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNDSYN 227

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
             I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I+
Sbjct: 228 ENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIV 287

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV ++ P+F GQTKTKL + + +  VEN + D    +L +NP  A  ++E   + +  R 
Sbjct: 288 SVKLKNPQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARARE 347

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
             RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAG
Sbjct: 348 AARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAG 393


>gi|310781051|gb|ADP24001.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781053|gb|ADP24002.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 396

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 154/408 (37%), Positives = 228/408 (55%), Gaps = 17/408 (4%)

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           HHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+ L
Sbjct: 2   HHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVAL 60

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + LE
Sbjct: 61  TMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDLE 120

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
              +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  E 
Sbjct: 121 VIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGKE- 177

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313
                 E F + GG+ ++++    N+ ++  E    + +        VE  + + +    
Sbjct: 178 ------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNDSYNE 228

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
            I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I+S
Sbjct: 229 NIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVS 288

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V ++ P+F GQTKTKL + + +  VEN + D    +L +NP  A  ++E   + +  R  
Sbjct: 289 VKLKNPQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREA 348

Query: 432 RRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
            RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSA
Sbjct: 349 ARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSA 396


>gi|310781177|gb|ADP24064.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 395

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 153/408 (37%), Positives = 228/408 (55%), Gaps = 17/408 (4%)

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           HHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+ L
Sbjct: 1   HHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVAL 59

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + +G+P + LE
Sbjct: 60  TMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHGKIYRQIYEKGVPKTDLE 119

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
              +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  E 
Sbjct: 120 VIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGKE- 176

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313
                 E F + GG+ ++++    N+ ++  E    + +        VE  + + +    
Sbjct: 177 ------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNDSYNE 227

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
            I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I+S
Sbjct: 228 NIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVS 287

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V ++ P+F GQTKTKL + + +  VEN + D    +L +NP  A  ++E   + +  R  
Sbjct: 288 VKLKNPQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREA 347

Query: 432 RRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
            RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSA
Sbjct: 348 ARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSA 395


>gi|310781029|gb|ADP23990.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 393

 Score =  284 bits (726), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 152/406 (37%), Positives = 226/406 (55%), Gaps = 17/406 (4%)

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           HHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+ L
Sbjct: 1   HHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVAL 59

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + LE
Sbjct: 60  TMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDLE 119

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
              +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  E 
Sbjct: 120 VIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGKE- 176

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313
                 E F + GG+ ++++    N+ ++  E    + +        VE  + + +    
Sbjct: 177 ------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNDSYNE 227

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
            I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I+S
Sbjct: 228 NIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVS 287

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V ++ P+F GQTKTKL + + +  VEN + D    +L +NP  A  ++E   + +  R  
Sbjct: 288 VKLKNPQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREA 347

Query: 432 RRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
            RK RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGG
Sbjct: 348 ARKARELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGG 393


>gi|167077361|gb|ABZ10902.1| DNA gyrase subunit B [Burkholderia vietnamiensis]
          Length = 623

 Score =  284 bits (725), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 161/461 (34%), Positives = 243/461 (52%), Gaps = 29/461 (6%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKVRNKRGTRITFRPD 212
           LS  L +TV R       +F RGI             +SP+       N RGT + F  D
Sbjct: 1   LSSWLRLTVRRNGKKHFMEFHRGIAQDRVLEQVDGVEVSPMLVTGDTEN-RGTEVHFMAD 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P IFG    +    L K  +  ++L+  V+   +  +   E         F F GG+K +
Sbjct: 60  PTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD-------FAFAGGVKGF 111

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++   + ++ +   +F    EK G     VE A+ W +     +  + N I   +GGTH 
Sbjct: 112 VEYINKTKTNLHPTVFFANGEKDGV---GVEVAMQWNDSYNENVLCFTNNIPQRDGGTHL 168

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +GLR A+TR I KY    +   K  +    DD+      +LSV + EP+F+ QTK KLVS
Sbjct: 169 TGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVS 228

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLR 448
            + +  VE  +    + +L++ P +A  +   ++E +  R   RK RE+ R+   +  + 
Sbjct: 229 SEVRAPVEEVVAKALEEFLLETPTDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVG 288

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+LNV  A  +K+ 
Sbjct: 289 LPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLL 348

Query: 509 NNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
           +++QI+ LV ALGC         + LRY ++IIMTDADVDGAHI +LLLTFFY++M +++
Sbjct: 349 SSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPEMV 408

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           E+ ++++  PPL++I  G    Y  D+      +      G
Sbjct: 409 ERGYVYIAQPPLYKIKAGKDERYLKDDAELNAHMLRLALQG 449


>gi|167077359|gb|ABZ10901.1| DNA gyrase subunit B [Burkholderia vietnamiensis]
          Length = 622

 Score =  284 bits (725), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 161/461 (34%), Positives = 243/461 (52%), Gaps = 29/461 (6%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKVRNKRGTRITFRPD 212
           LS  L +TV R       +F RGI             +SP+       N RGT + F  D
Sbjct: 1   LSSWLRLTVRRNGKKHFMEFHRGIAQDRVLEQVDGVEVSPMLVTGDTEN-RGTEVHFMAD 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P IFG    +    L K  +  ++L+  V+   +  +   E         F F GG+K +
Sbjct: 60  PTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD-------FAFAGGVKGF 111

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++   + ++ +   +F    EK G     VE A+ W +     +  + N I   +GGTH 
Sbjct: 112 VEYINKTKTNLHPTVFFANGEKDGV---GVEVAMQWNDSYNENVLCFTNNIPQRDGGTHL 168

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +GLR A+TR I KY    +   K  +    DD+      +LSV + EP+F+ QTK KLVS
Sbjct: 169 TGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVS 228

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLR 448
            + +  VE  +    + +L++ P +A  +   ++E +  R   RK RE+ R+   +  + 
Sbjct: 229 SEVRAPVEEVVAKALEEFLLETPTDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVG 288

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+LNV  A  +K+ 
Sbjct: 289 LPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLL 348

Query: 509 NNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
           +++QI+ LV ALGC         + LRY ++IIMTDADVDGAHI +LLLTFFY++M +++
Sbjct: 349 SSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPEMV 408

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           E+ ++++  PPL++I  G    Y  D+      +      G
Sbjct: 409 ERGYVYIAQPPLYKIKAGKDERYLKDDAELNAHMLRLALQG 449


>gi|119369956|gb|ABL67992.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 424

 Score =  284 bits (725), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 234/426 (54%), Positives = 303/426 (71%), Gaps = 3/426 (0%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKF    Y+ SGGLHGVG SVVNALS+ L V VAR+      +F RG P 
Sbjct: 1   EVIMTVLHAGGKFGGKVYDTSGGLHGVGSSVVNALSEWLEVEVARERQNHVMRFERGKPA 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
             L+    V N+RGT + F+PD +IFG +A F  A L +M +SKAYL   V+  W CD  
Sbjct: 61  GKLKNTGSV-NRRGTIVRFKPDAQIFGSEAHFSPAMLYRMAKSKAYLFRGVEIHWRCDPG 119

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-C 309
           +      P  E   FPGGL  +L++++E  + +S  +F G+TE K   +G VEWA+AW  
Sbjct: 120 LIRNGKTPADEILKFPGGLADFLRSEIEGETTVSPRLFLGRTENKD-GKGAVEWAVAWAP 178

Query: 310 EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGI 369
           E +  + S+CNTI T  GGTHE GLR ALT+ ++ Y E   NK+   I  DD+M +A  +
Sbjct: 179 ERDGFMQSFCNTIPTPLGGTHEQGLRNALTKALRAYGERAGNKKTAQITPDDVMSAACAV 238

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           LSVFIREPEF GQTK KL + DAQR VE  +RD FDH+L ++P EA +LL +VI+++++R
Sbjct: 239 LSVFIREPEFQGQTKEKLSTQDAQRLVETVVRDHFDHWLAESPAEADRLLSFVIDQADDR 298

Query: 430 LRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
           L+RR++RE  RK+A RKLRLPGKL DC+++   GTELF+VEGDSAGGSAKQAR+R+ QAV
Sbjct: 299 LKRRQERETQRKSATRKLRLPGKLTDCTRDAPGGTELFLVEGDSAGGSAKQARDRTTQAV 358

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549
           LPLRGKILNVASA + K+  NQ++ DL+ ALGC   S+YREE+LRYE+VIIMTDADVDG+
Sbjct: 359 LPLRGKILNVASAAAGKLAQNQELSDLLLALGCGAGSKYREEELRYERVIIMTDADVDGS 418

Query: 550 HIASLL 555
           HI +LL
Sbjct: 419 HIRTLL 424


>gi|165968990|gb|ABY76051.1| topoisomerase IV subunit ParE [Parachlamydia sp. TUMPL1]
          Length = 494

 Score =  283 bits (724), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 154/545 (28%), Positives = 254/545 (46%), Gaps = 58/545 (10%)

Query: 109 VVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDE 168
           V D GRGIP+           +   ++ ++ G K+++  ++ S GL+GVG   VNALS  
Sbjct: 1   VRDFGRGIPLGK---------VIDCVSQINTGAKYNDDVFQFSVGLNGVGTKAVNALSSH 51

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
             V   R+       FS+G  +   EK +K     GT + F PD +IF     F+   + 
Sbjct: 52  FLVRSHREGKSMEAVFSQGKLIR--EKSQKTSEPDGTYVEFIPDKEIFKKYR-FEPEYIQ 108

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           K     AYL+  +   ++     +E              GL   L  ++    L     +
Sbjct: 109 KRLWHYAYLNTGLILEYNGQDIYSE-------------NGLLDLLNEEVTEDRLYEPLYY 155

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
            GK          +E+A    +       S+ N   T +GGTH S  R  + +G+ +Y+ 
Sbjct: 156 RGK---------LLEFAFLHTQSYGESYFSFVNGQYTSDGGTHLSAFREGILKGVNEYS- 205

Query: 348 LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               K+  +    DL    VG ++V I++P F  QTK KL + + +  +   ++D   + 
Sbjct: 206 ----KK--NFQGVDLREGIVGTVAVRIKDPVFESQTKNKLGNTELRGPLVQEVKDAVVNM 259

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHG---- 463
           L +N   A  ++E ++   + R      ++  ++   +      K  DC  +        
Sbjct: 260 LYKNSSTANSIIERIVFNEKLRKELAAVKKEAKEKQKKISFKIPKXRDCKYHAQDKADVG 319

Query: 464 --TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
             T +F+ EGDSA  S   +R+   QAV  LRGK LNV     +++  N+++ +L+ AL 
Sbjct: 320 EKTMIFLTEGDSASASIVASRDPLTQAVFSLRGKPLNVHGMKIDQLYKNEEMFNLMSALN 379

Query: 522 CRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581
                    E+LRY+KVI+ TDADVDG HI +LL+TFF      L+   HLF++  PLF+
Sbjct: 380 IE----DDIENLRYQKVILATDADVDGMHIRNLLITFFLTYFEGLVLNGHLFILETPLFK 435

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           +    K++Y + EE + K +++ KK     IE++RFKGLGE+  ++ K+         L+
Sbjct: 436 VRNREKTLYCYSEEERDKAIKQLKK----GIEVTRFKGLGEISPNEFKQFIG--KDIRLI 489

Query: 642 RVEIN 646
            V I+
Sbjct: 490 PVTIS 494


>gi|23978276|dbj|BAC21123.1| DNA gyrase B subunit [Pleurocapsa sp. PCC 7327]
          Length = 391

 Score =  283 bits (723), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 148/396 (37%), Positives = 217/396 (54%), Gaps = 10/396 (2%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T  + LHHL  EV+DN++DE +AGY   IEV ++ +G +TV DNGRGIP + HP    KS
Sbjct: 1   TGPRGLHHLVYEVVDNSIDEALAGYCTHIEVDINSDGSVTVTDNGRGIPTDTHP-TTGKS 59

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
            LE ++T LHAGGKF    Y++SGGLHGVGISVVNALS+ + VTV R N + +Q++ RGI
Sbjct: 60  ALETVMTVLHAGGKFGGGGYKVSGGLHGVGISVVNALSEWVKVTVWRDNKVHTQRYERGI 119

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
           P++ LE K +   + GT ITF PD +IF     FD + L    +  AYL+  VK  +S  
Sbjct: 120 PVTELEIKPEKEERTGTSITFLPDLQIFTGGIEFDYSTLAGRLKELAYLNAGVKITFSDK 179

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +        P  E + + GG+K Y+      +  +  +I     EK G  +  V      
Sbjct: 180 R-----GSEPHVETYCYEGGIKEYVAYMCREKQPLHQDIIYVSGEKNGI-QLEVAMQWCV 233

Query: 309 CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISA 366
              +  +  + N I T +GGTH  GL+  LTR +   A      +    ++  +++    
Sbjct: 234 DAYSDNLLGFANNIRTIDGGTHLEGLKTVLTRTLNSVARKRNKIKDNEPNLAGENVREGL 293

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
            G++SV + EPEF GQTKTKL + + +  V++   +  + YL  +P  A  ++E  ++  
Sbjct: 294 TGVISVKVPEPEFEGQTKTKLGNTEVRGIVDSIAGEALNEYLEFHPQVADAIIEKAVQAF 353

Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIA 461
           +     R+ RE V RK+ +    LPGKLADCS    
Sbjct: 354 KAAEAARRARELVRRKSVLESSPLPGKLADCSSRDP 389


>gi|119369952|gb|ABL67990.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 424

 Score =  283 bits (723), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 233/426 (54%), Positives = 301/426 (70%), Gaps = 3/426 (0%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKF    Y+ SGGLHGVG SVVNALS+ L V VAR+      +F RG P 
Sbjct: 1   EVIMTVLHAGGKFGGKVYDTSGGLHGVGSSVVNALSEWLEVEVARERQNHVMRFERGKPA 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
             L+    V N+RGT + F+PD +IFG +A F  A L +M +SKAYL   V+  W CD  
Sbjct: 61  GKLKNTGSV-NRRGTIVRFKPDAQIFGSEAHFSPAMLYRMAKSKAYLFRGVEIHWRCDPG 119

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-C 309
           +      P  E   FPGGL  +L++++E  + +S  +F G+TE K   +G VEWA+AW  
Sbjct: 120 LIRNGKTPADEILKFPGGLADFLRSEIEGETTVSPRLFLGRTENKD-GKGAVEWAVAWAP 178

Query: 310 EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGI 369
           E +  + S+CNTI T  GGTHE GLR ALT+ ++ Y E   NK+   I  DD+M +A  +
Sbjct: 179 ERDGFMQSFCNTIPTPLGGTHEQGLRNALTKALRAYGERAGNKKTAQITPDDVMSAACAV 238

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           LSVFIREPEF GQTK KL + DAQR VE  +RD FDH+L ++P EA +LL +VI+++++R
Sbjct: 239 LSVFIREPEFQGQTKEKLSTQDAQRLVETVVRDHFDHWLAESPAEADRLLSFVIDQADDR 298

Query: 430 LRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
           L+RR+ RE  RK+A RKL LPGKL DC+++   GTELF+VEGDSAGGSAKQAR+R+ QAV
Sbjct: 299 LKRRQDRETQRKSATRKLLLPGKLTDCTRDAPGGTELFLVEGDSAGGSAKQARDRTTQAV 358

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549
           LPLRGKILNVASA + K+  NQ++ DL+ ALGC   S+YREE+LRYE+VIIMTDADVDG+
Sbjct: 359 LPLRGKILNVASAAAGKLAQNQELSDLLLALGCGAGSKYREEELRYERVIIMTDADVDGS 418

Query: 550 HIASLL 555
           HI +LL
Sbjct: 419 HIRTLL 424


>gi|148971355|gb|ABR20215.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 424

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 234/426 (54%), Positives = 303/426 (71%), Gaps = 3/426 (0%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKF+   Y+ SGGLHGVG SVVNALS+ L V VAR+      +F RG P 
Sbjct: 1   EVIMTVLHAGGKFEGKVYDTSGGLHGVGSSVVNALSEWLEVEVARERQNHVMRFERGKPA 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
             L+    V N+RGT + F+PD +IFG +A F  A L +M +SKAYL   V+  W CD  
Sbjct: 61  GKLKNTGSV-NRRGTIVRFKPDAQIFGSEAHFSPAMLYRMAKSKAYLFRGVEIHWRCDPS 119

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-C 309
           +      P  E   FPGGL  +L++++E  + +S  +F G+TE K   +G VEWA+AW  
Sbjct: 120 LIRNGKTPADEILKFPGGLADFLRSEIEGETTVSPRLFLGRTENKD-GKGAVEWAVAWAP 178

Query: 310 EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGI 369
           E +  + S+CNTI T  GGTHE GLR ALT+ ++ Y E   NK+   I  DD+M +A  +
Sbjct: 179 ERDGFMQSFCNTIPTPLGGTHEQGLRNALTKALRAYGERAGNKKTAQITPDDVMSAACAV 238

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           LSVFIREPEF GQTK KL + DAQR VE  +RD FDH+L  +P EA +LL +VI+++++R
Sbjct: 239 LSVFIREPEFQGQTKEKLSTQDAQRLVETVVRDHFDHWLAGSPAEADRLLSFVIDQADDR 298

Query: 430 LRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
           L+RR++RE  RK+A RKLRLPGKL DC+++   GTELF+VEGDSAGGSAKQAR+R+ QAV
Sbjct: 299 LKRRQERETQRKSATRKLRLPGKLTDCTRDAPGGTELFLVEGDSAGGSAKQARDRTTQAV 358

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549
           LPLRGKILNVASA + K+  NQ++ DL+ ALGC   S+YREE+LRYE+VIIMTDADVDG+
Sbjct: 359 LPLRGKILNVASAAAGKLAQNQELSDLLLALGCGAGSKYREEELRYERVIIMTDADVDGS 418

Query: 550 HIASLL 555
           HI +LL
Sbjct: 419 HIRTLL 424


>gi|291333978|gb|ADD93655.1| DNA topoisomerase IV B subunit [uncultured marine bacterium
           MedDCM-OCT-S04-C694]
          Length = 297

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 164/299 (54%), Positives = 222/299 (74%), Gaps = 3/299 (1%)

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           + +++AQ+ VEN++RD FD++L  +   A  +L+++I R+EERLRRR+++E  RK+A ++
Sbjct: 1   MATVEAQKLVENSVRDHFDNWLASDSKSANAILDFLILRAEERLRRRQEKETARKSATKR 60

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
           LRLPGKL DCS++   GTELFIVEGDSAGGSAK AR+R  QA+LPLRGKILNV  A S K
Sbjct: 61  LRLPGKLVDCSESTRDGTELFIVEGDSAGGSAKMARDRKTQALLPLRGKILNVLGAASSK 120

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           +  NQ+I DL QALG    S++  +DLRYEK+IIMTDADVDGAHIASLL+TFF+ +M  L
Sbjct: 121 LGTNQEINDLTQALGTSLGSKFNIDDLRYEKIIIMTDADVDGAHIASLLMTFFFTQMRPL 180

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
           I+Q HL+L  PPLFR+TQG+  VY  D+  + K + E    GKGKIE+SRFKGLGEM A 
Sbjct: 181 IDQGHLYLACPPLFRLTQGSNRVYCKDQIERDKWISE-GLGGKGKIEVSRFKGLGEMDAK 239

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            LK+T MD   R L+RV I++D     +T D +++LMG K + R+++IQ  A F++++ 
Sbjct: 240 DLKQTTMDPTSRKLIRVSIDEDH--PGETGDLVDRLMGKKPELRYQYIQSNARFVNELD 296


>gi|23978251|dbj|BAC21117.1| DNA gyrase B subunit [Chlorogloeopsis sp. PCC 6718]
          Length = 396

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 142/396 (35%), Positives = 214/396 (54%), Gaps = 5/396 (1%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T  + LHHL  EV+DN++DE +AGY   +EV L+ +G +TV D+GRGIP + HP+   KS
Sbjct: 1   TGPRGLHHLVYEVVDNSIDEALAGYCTHVEVDLNADGSVTVTDDGRGIPTDIHPQ-TGKS 59

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
            LE +LT LHAGGKF    Y++SGGLHGVGISVVNALS+ + V V R   +++Q++ RG+
Sbjct: 60  ALETVLTVLHAGGKFGGGGYKVSGGLHGVGISVVNALSEWVEVKVWRDKKVYAQRYERGV 119

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
           P++ L  K    N+ GT + F+PDP+IF     FD   L    +  AYL+  VK  ++  
Sbjct: 120 PVTELTAKPYKENRTGTSVNFKPDPQIFTTDTEFDYITLASRLRELAYLNAGVKITFTDY 179

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +    K   P+ E + + GG+  Y+     ++  +  EI   + E+    +  V      
Sbjct: 180 RLQLLKSDQPKVETYEYKGGICEYIAYMNADKQPLHEEIIYVQGERNNV-QVEVSLQWCT 238

Query: 309 CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISA 366
                 +  + N I T +GGTH  GL+  LTR +   A      +    ++  + +    
Sbjct: 239 DAYTDNVLGFANNIRTVDGGTHLEGLKAVLTRTLNAIARKRNKIKENEPNLSGEHVREGL 298

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
            G++SV + +PEF GQTKTKL + + +  V++ + +    YL   P  A  +L+  I+  
Sbjct: 299 TGVISVNVPDPEFEGQTKTKLGNTEVRGIVDSLVGESLTEYLEFRPRIADAILDKAIQAF 358

Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIA 461
           +     R  RE V RK+ +    LPGKLADCS    
Sbjct: 359 KAAEAARHARELVRRKSVLESSPLPGKLADCSTRDP 394


>gi|157829905|pdb|1AJ6|A Chain A, Novobiocin-Resistant Mutant (R136h) Of The N-Terminal 24
           Kda Fragment Of Dna Gyrase B Complexed With Novobiocin
           At 2.3 Angstroms Resolution
          Length = 219

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 91/228 (39%), Positives = 140/228 (61%), Gaps = 10/228 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 1   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 60

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 61  TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 119

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + +  +  I  Q +  G+P +PL    +     GT + F P  + F + 
Sbjct: 120 SVVNALSQKLELVIQHEGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 178

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
             F+   L K  +  ++L+  V       ++  E       + F++ G
Sbjct: 179 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEG 219


>gi|18916432|dbj|BAB85508.1| DNA gyrase subunit B [Bradyrhizobium japonicum]
          Length = 374

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 131/359 (36%), Positives = 199/359 (55%), Gaps = 12/359 (3%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DNA+DE +AG+A  +EV L+ +  +TV D+GRGIPV+ H K   
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHATRVEVILNSDNSVTVRDDGRGIPVDIH-KGEG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALS +L + + R N     +F+ 
Sbjct: 60  ISAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAH 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  ++PL+       +RGT +TF    + F +   +D A L    +  A+L+  V    S
Sbjct: 120 GDAVAPLKVVGDAPGRRGTEVTFLASTETFKN-IEYDFATLEHRLRELAFLNSGVNIVLS 178

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   EK      EE ++ GG++ +++    N+  I       ++   G     VE A+
Sbjct: 179 DMRHAVEKR-----EEMHYSGGVEEFVKYLDRNKKAIVPAPIMVRSAANGI---GVEAAL 230

Query: 307 AWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
            W +   E    + N I   +GGTH +G R ALTR +  YAE    K  I++  DD    
Sbjct: 231 WWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQVNGYAEANAKKEKIALTGDDCREG 290

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
              +LSV + +P+F+ QTK KLVS + +  VEN L +    +  ++P EA  ++  VI+
Sbjct: 291 LTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVLNEALQAWFEEHPGEAKMIVGKVIQ 349


>gi|157311305|ref|YP_001469348.1| DNA topoisomerase II large subunit [Enterobacteria phage Phi1]
 gi|149380509|gb|ABR24514.1| gp60+39 topoisomerase II large subunit [Enterobacteria phage Phi1]
          Length = 607

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 137/657 (20%), Positives = 241/657 (36%), Gaps = 80/657 (12%)

Query: 47  SSIRILEGLEPVRMRPGMYIGGTD-----------------EKALHHLFSEVIDNAMDEV 89
           S  RIL   E V  R GMYIG T                     L  +  E+IDN++DE 
Sbjct: 2   SEFRILSDREHVLKRAGMYIGSTTYEEHQRFLFGKWTKISYVPGLVKIIDEIIDNSVDEA 61

Query: 90  IAG---YANLIEVSLDGNGFLTVVDNGRGIPVENH--PKFPNKSTLEIILTTLHAGGKFD 144
           I     +AN+I V +  N  +TV DNGRGIP      P+           T   AG  FD
Sbjct: 62  IRTNFEFANVISVDI-QNNIVTVTDNGRGIPQHMVTTPEGTQIPQPVAAWTRTKAGSNFD 120

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           ++   ++ G++GVG S+ N  SD          T  + + + G     +    K    +G
Sbjct: 121 DTN-RLTQGMNGVGSSLSNFFSDWFTGVTCDGETEMTVQCTNG--AENITWSSKPSKLKG 177

Query: 205 TRITFRPDPKIFGDKAGFD--AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
           T++TF PD   F      +     +    QS + +  ++   ++  + +++         
Sbjct: 178 TKVTFCPDFDHFEGYMMDNSVLDIVHDRLQSLSVIFPKITFKFNGKRIVSK--------- 228

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
           F     L       +E+++   + +   + E                    +  S+ N +
Sbjct: 229 FKDYAKLYNDDPFVIEDKNFSLALVPAVEGE------------------GFKSVSFANGL 270

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T  GGTH   +   L   I K   + +  +     +         ++   +    F  Q
Sbjct: 271 FTKNGGTHVDYVTDDLCEEIVK--RIKKEYKVDVTKAAVKSGLTCILIVRELPNLRFDSQ 328

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRK 441
           TK +L +            D     L +   +   ++  +I      +    K       
Sbjct: 329 TKERLTNPTGDI---KRHIDLDFKKLAKVIAKKENIIMPIIAVVLARKEAADKAAATKAA 385

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            A ++ ++   +          T LF+ EGDSA       R++      PLRGK L    
Sbjct: 386 KAAKRAKVAKHVKANLIGTDAETTLFLTEGDSAINYLISVRDQDLHGGFPLRGKTLTTWE 445

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH-IASLLLTFFY 560
               KI  N +I +++   G +      E  ++Y+ + IMTDAD DG   I   L++FF 
Sbjct: 446 QPEAKIVKNAEIFNIMAITGLQFGVDALEV-MQYKNIAIMTDADTDGIGSIKPSLISFFA 504

Query: 561 QEMYDLIEQKHLFLISPPLFRI--TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           +   +L E   +  I  P+      +G    + +D E  +   +  K        I   K
Sbjct: 505 R-WPELFEDGRIRFIKTPIIIAEPKKGDDVRWYYDLEDFENDRDNIK-----GYSIRYIK 558

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675
           GL  +  S         +   ++   + + +   ++ ++  + L    AD+R  ++Q
Sbjct: 559 GLASLTES---------DYHRVINDPVMEIITLPENYKELFDLLYSEDADQRKIWMQ 606


>gi|31071479|dbj|BAC76788.1| DNA gyrase B subunit [Chlorogloeopsis fritschii PCC 6912]
          Length = 396

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 141/396 (35%), Positives = 216/396 (54%), Gaps = 5/396 (1%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T  + LHHL  EV+DN++DE +AGY   +EV L+ +G +TV D+GRGIP + HP+   KS
Sbjct: 1   TGPRGLHHLVYEVVDNSIDEALAGYCTHVEVDLNADGSVTVTDDGRGIPTDIHPQ-TGKS 59

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
            LE +LT LHAGGKF    Y++SGGLHGVGISVVNALS+ + V V R   +++Q++ RG+
Sbjct: 60  ALETVLTVLHAGGKFGGGGYKVSGGLHGVGISVVNALSEWVEVKVWRDKKVYAQRYERGV 119

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
           P++ L  K    N+ GT + F+PDP+IF     FD   L    +  AYL+  VK  ++  
Sbjct: 120 PVTELTAKPYKENRTGTSVNFKPDPQIFTTDTEFDYITLASRLRELAYLNAGVKITFTDY 179

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +    K   P+ E + + GG++ Y+   + ++  +  E+   + E+    +  V      
Sbjct: 180 RLQLLKSDQPKVETYEYEGGIREYIAYMIADKQPLHEEVIYVQGERNNV-QVEVSLQWCT 238

Query: 309 CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISA 366
                 +  + N I T +GGTH  GL+  LTR +   A      +    ++  + +    
Sbjct: 239 DAYTDNVLGFANNIRTVDGGTHLEGLKAVLTRTLNAIARKRNKIKENEPNLSGEHVREGL 298

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
            G++SV + +PEF GQTKTKL + + +  V++ + +    YL   P  A  +L+  I+  
Sbjct: 299 TGVISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGESLTEYLEFRPSIADAILDKAIQAF 358

Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIA 461
           +     R  RE V RK+ +    LPGKLADCS    
Sbjct: 359 KAAEAARHARELVRRKSVLESSPLPGKLADCSTRDP 394


>gi|167041928|gb|ABZ06666.1| putative histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
           [uncultured marine microorganism HF4000_137B17]
          Length = 334

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 117/316 (37%), Positives = 172/316 (54%), Gaps = 21/316 (6%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYA 94
              ++   Y A SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DN++DE + GY 
Sbjct: 6   QQDNSKSKYRADSIKVLKGLEAVRKRPGMYIGDTDDGTGLHHMVYEVVDNSIDEALDGYC 65

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             I+V+++ +  ++V DNGRGIPV+ H K   KS  E+I+T LHAGGKFD+ +Y+ISGGL
Sbjct: 66  TNIKVTINSDQSISVEDNGRGIPVDIH-KGERKSAAEVIMTQLHAGGKFDHDSYKISGGL 124

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS++L + + R    +  +F  G  LSPL+ K K     GT I F P  K
Sbjct: 125 HGVGVSVVNALSEKLILGIFRDKKEYFVEFKDGRALSPLKVKGKTNK-TGTFINFLPSKK 183

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           +F     F ++ L K  +  A+L+  +           EK    +       GG++ +++
Sbjct: 184 VFSL-TKFSSSILQKRMRELAFLNKGLSIILVDKTAKKEKEYKNK-----HNGGIQEFVE 237

Query: 275 TKLENRS--------LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
              +N++         +  +       K       VE ++ W      E+  + N I   
Sbjct: 238 FLDKNKTALVNKNDVNLFKKPIYISGLKDNVM---VECSLKWNAGYSEEMLPFANNIHQR 294

Query: 326 EGGTHESGLRVALTRG 341
           +GGTH  G R ALTR 
Sbjct: 295 DGGTHLLGFRSALTRV 310


>gi|148762485|dbj|BAF63944.1| DNA topoisomerase IV subunit B [Bacillus licheniformis]
          Length = 406

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 147/416 (35%), Positives = 220/416 (52%), Gaps = 24/416 (5%)

Query: 73  ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
            LHHL  E++DN++DEV+AG+ N I V +  +  ++V D GRG+P   H     K T EI
Sbjct: 6   GLHHLVYEIVDNSVDEVLAGHGNHIIVKIHKDNSISVQDRGRGMPTGMHK--LGKPTPEI 63

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR-GIPLS 191
           ILT LHAGGKF    Y+ SGGLHGVG SVVNALS+ L VT+ R   ++ Q+F   G P++
Sbjct: 64  ILTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSEWLTVTIERDGNVYRQRFENGGKPVT 123

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
            L+K    +   GT I F+PDP +F     F+   L +  +  A+L   +K     +++ 
Sbjct: 124 SLDKIGTTKK-TGTLIHFKPDPTMFST-TTFNFETLSERLRESAFLLKGLKIELIDERDQ 181

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
            +       E F +  G++ ++    E +    SE+ + + E  G     V++A  + + 
Sbjct: 182 TK-------ETFLYENGIEAFVAYLNEEKD-ALSEVVSFEGEHNGI---EVDFAFQFNDG 230

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVG 368
               I S+ N + T +GGTHESG + A+TR   +YA       ++  ++   D+      
Sbjct: 231 YSENILSFVNNVRTKDGGTHESGAKTAMTRAFNEYARKVALLKEKDKNLEGTDIREGLSA 290

Query: 369 ILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
           I+SV I E   +F G TK KL + +A+  V+  + +   ++L +N   AT L++  I+ S
Sbjct: 291 IVSVRIPEELLQFEGLTKGKLGTSEARSAVDAIVSEQLAYFLEENRETATLLVKKAIKAS 350

Query: 427 EERLRRRKQREVNRKTAIRK---LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           + R   RK RE  R    RK     L GKL           EL++VEGDSAGGSAK
Sbjct: 351 QAREAARKAREEARSGKKRKKSEATLSGKLTPAQSRNPSKNELYLVEGDSAGGSAK 406


>gi|157683607|gb|ABV64535.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi C]
          Length = 419

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 167/430 (38%), Positives = 249/430 (57%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL       +K GT + F P  + F +   F+   L K  +  ++L+  V       ++
Sbjct: 61  APLAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD 119

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +
Sbjct: 120 GKE-------DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     +
Sbjct: 170 GFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLI 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+   
Sbjct: 230 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                RR +    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  + IMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIFIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHIRTLL 419


>gi|152968563|gb|ABS50296.1| topoisomerase 2 [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|157683605|gb|ABV64534.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi C]
          Length = 419

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 168/430 (39%), Positives = 250/430 (58%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL       +K GT + F P  + F +   F+   L K  +  ++L+  V       ++
Sbjct: 61  APLAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD 119

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +
Sbjct: 120 GKE-------DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     +
Sbjct: 170 GFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLI 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+   
Sbjct: 230 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDPAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                RR +    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHIRTLL 419


>gi|261599945|dbj|BAI45223.1| DNA gyrase beta-subunit [Pullulanibacillus sp. D' C-1]
          Length = 419

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 178/429 (41%), Positives = 258/429 (60%), Gaps = 14/429 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKF+   Y++SGGLHGVG SVVNALS+EL V VA    I  Q + RG+P 
Sbjct: 1   EVIMTVLHAGGKFEGGGYKVSGGLHGVGASVVNALSEELWVKVALHGKIHYQVYKRGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           + LE         GT I F PDP+IF +   F+   L K  +  A+L+  +K     ++E
Sbjct: 61  ADLEVIGDTEK-TGTTIHFIPDPEIFTETTVFEFDILAKRIKELAFLNRGLKITLEDERE 119

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             +K      + +++ GG+K++++   + + ++  E    + EK G    +VE A+ + +
Sbjct: 120 NGKK------KSYFYEGGIKSFVKDLNKQKDVLHEEPIYVEGEKDGI---SVEVAMQYND 170

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
               +I SY N I T EGGTHE G + ALTR I  YA+ TQ   +   +++ DD+     
Sbjct: 171 GYTSQIYSYANNIHTHEGGTHEFGFKTALTRVINDYAKRTQIFKENDPNLMGDDVREGLT 230

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERS 426
            I+SV   +P+F GQTKTKL + +A+   E+   + F  +L++NP  A K+++  ++   
Sbjct: 231 AIVSVKHPDPQFEGQTKTKLGNTEARTITESLFGEKFARFLIENPDVARKIVDKGLMASR 290

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                ++ +    RK+A+    LPGKLADCS   A  +E++IVEGDSAGGSAKQ R+R  
Sbjct: 291 ARAAAKKARELTRRKSALEVSSLPGKLADCSSKDAKISEIYIVEGDSAGGSAKQGRDRHF 350

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADV 546
           QA+LPLRGKILNV  A  +KI +N +I  ++ ALGC   + +  E  RY KVIIMTDADV
Sbjct: 351 QAILPLRGKILNVEKARLDKILSNNEIRAIITALGCGVSTDFDIEKARYHKVIIMTDADV 410

Query: 547 DGAHIASLL 555
           DG+HI +LL
Sbjct: 411 DGSHIRTLL 419


>gi|4959486|gb|AAD34367.1|AF129764_1 ParE [Streptococcus mitis]
          Length = 234

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 96/233 (41%), Positives = 139/233 (59%), Gaps = 12/233 (5%)

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 2   KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 61

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 62  EINTMIYTIGAGVGADFSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 121

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +++ ++  K       + R+KGLGEM A Q
Sbjct: 122 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQLGK----GATLQRYKGLGEMNADQ 177

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 178 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 226


>gi|239735449|dbj|BAH70491.1| gyrase B subunit [Cardinium endosymbiont of Tetranychus urticae red
           form C]
          Length = 462

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 178/468 (38%), Positives = 260/468 (55%), Gaps = 16/468 (3%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+S VNALS  L VTV R   I+ Q++++GIP  P+++     + RGT + F PD
Sbjct: 1   GLHGVGVSCVNALSAHLAVTVYRNGKIYEQEYAQGIPQYPVKEVG-TTDLRGTTVHFTPD 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
             IF     ++   ++   Q  AYL+  +K      +E  E  G P  + F+  GGL  +
Sbjct: 60  SSIFTTTV-YNLHTIVNRLQELAYLNVGLKMQLEDRRERDE-AGNPFGQTFHSQGGLLEF 117

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           +     ++  I       + EK       V+ A+ +       + SY N I T EGG H 
Sbjct: 118 VAHLDSSKVSIMPAPILVEGEKNNV---VVQVAMTYNTGYSETVVSYVNNIHTIEGGMHV 174

Query: 332 SGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G R ALTR +K YA+ +    K  I II DD       ++SV + EP+F GQTKTKL +
Sbjct: 175 TGFRRALTRTLKSYADKSGLLEKAKIEIIGDDFREGLTAVISVKVAEPQFEGQTKTKLGN 234

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLR 448
            + Q  VE+ + +   +YL + P EA  ++  V+      +  R+ +  V RK  +    
Sbjct: 235 AEVQGAVESCVGEVLHYYLEEPPKEAKLIINKVMVAAQARQAARKAREMVQRKNVLMSNS 294

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADCS+      ELF+VEGDSAGG+AK  RNR  QA+LPL+GKILNV  A   KI 
Sbjct: 295 LPGKLADCSERDPALCELFLVEGDSAGGTAKMGRNRRFQAILPLKGKILNVEKAQVYKIY 354

Query: 509 NNQQIMDLVQALGCR-----TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +N+Q+ +++ ALG              + LRY K++IMTDADVDG+HI +L+LTFF++ M
Sbjct: 355 DNEQVRNMITALGVTMGTDGNDQAIHLDKLRYHKIVIMTDADVDGSHIRTLILTFFFRCM 414

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK-KHGKG 610
            D+IE+ HL++ SPPL+ + +  +  Y   +  K+  + +F  K GK 
Sbjct: 415 RDIIEKAHLYIASPPLYLVKRDKEEQYCWTDSEKEASVTQFSLKDGKA 462


>gi|149787396|gb|ABR29846.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|152968549|gb|ABS50289.1| topoisomerase 2 [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
 gi|152968551|gb|ABS50290.1| topoisomerase 2 [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|152968555|gb|ABS50292.1| topoisomerase 2 [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|152968557|gb|ABS50293.1| topoisomerase 2 [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|152968559|gb|ABS50294.1| topoisomerase 2 [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|152968561|gb|ABS50295.1| topoisomerase 2 [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|157683577|gb|ABV64520.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi B]
 gi|157683579|gb|ABV64521.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi B]
 gi|157683581|gb|ABV64522.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi B]
 gi|157683583|gb|ABV64523.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi B]
 gi|157683585|gb|ABV64524.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi B]
 gi|157683587|gb|ABV64525.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi B]
 gi|157683589|gb|ABV64526.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi B]
 gi|157683591|gb|ABV64527.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi B]
 gi|157683595|gb|ABV64529.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi C]
 gi|157683597|gb|ABV64530.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi C]
 gi|157683599|gb|ABV64531.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi C]
 gi|157683601|gb|ABV64532.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi C]
 gi|157683603|gb|ABV64533.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi C]
 gi|157683611|gb|ABV64537.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi C]
 gi|157683613|gb|ABV64538.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|157683615|gb|ABV64539.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|157683617|gb|ABV64540.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|157683619|gb|ABV64541.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|157683623|gb|ABV64543.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|157683625|gb|ABV64544.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|157683627|gb|ABV64545.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi]
 gi|157683629|gb|ABV64546.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi]
 gi|157683631|gb|ABV64547.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi]
 gi|157683633|gb|ABV64548.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi]
 gi|157683637|gb|ABV64550.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi]
 gi|157683641|gb|ABV64552.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 419

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 168/430 (39%), Positives = 250/430 (58%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL       +K GT + F P  + F +   F+   L K  +  ++L+  V       ++
Sbjct: 61  APLAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD 119

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +
Sbjct: 120 GKE-------DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     +
Sbjct: 170 GFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLI 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+   
Sbjct: 230 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                RR +    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHIRTLL 419


>gi|119369950|gb|ABL67989.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 424

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 232/426 (54%), Positives = 302/426 (70%), Gaps = 3/426 (0%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHA G F+   Y+ SGGLHGVG SVVNALS+ L V VAR+      +F RG P 
Sbjct: 1   EVIMTVLHAWGNFEGKVYDTSGGLHGVGSSVVNALSEWLEVEVARERQNHVMRFERGKPA 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
             L+    V N+RGT + F+PD +IFG +A F  A L +M +SKAYL   V+  W CD  
Sbjct: 61  GKLKNTGSV-NRRGTIVRFKPDAQIFGSEAHFSPAMLYRMAKSKAYLFRGVEIHWRCDPS 119

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-C 309
           +      P  E   FPGGL  +L++++E  + +S  +F G+TE K   +G VEWA+AW  
Sbjct: 120 LIRNGKTPADEILKFPGGLADFLRSEIEGETTVSPRLFLGRTENKD-GKGAVEWAVAWAP 178

Query: 310 EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGI 369
           E +  + S+CNTI T  GGTHE GLR ALT+ ++ Y E   NK+   I  DD+M +A  +
Sbjct: 179 ERDGFMQSFCNTIPTPLGGTHEQGLRNALTKALRAYGERAGNKKTAQITPDDVMSAACAV 238

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           LSVFIREPEF GQTK KL + DAQR VE  +RD FDH+L ++P EA +LL +VI+++++R
Sbjct: 239 LSVFIREPEFQGQTKEKLSTQDAQRLVETVVRDHFDHWLAESPAEADRLLSFVIDQADDR 298

Query: 430 LRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
           L+RR++RE  RK+A RKLRLPGKL DC+++   GTELF+VEGDSAGGSAKQAR+R+ QAV
Sbjct: 299 LKRRQERETQRKSATRKLRLPGKLTDCTRDAPGGTELFLVEGDSAGGSAKQARDRTTQAV 358

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549
           LPLRGKILNVASA + K+  NQ++ DL+ ALGC   S+YREE+LRYE+VIIMTDADVDG+
Sbjct: 359 LPLRGKILNVASAAAGKLAQNQELSDLLLALGCGAGSKYREEELRYERVIIMTDADVDGS 418

Query: 550 HIASLL 555
           HI +LL
Sbjct: 419 HIRTLL 424


>gi|148470205|gb|ABQ66050.1| gyrase b [uncultured bacterium]
 gi|148971407|gb|ABR20241.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 424

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 162/431 (37%), Positives = 241/431 (55%), Gaps = 13/431 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD +TY++SGGLHGVG+S VNALS +L V V +   ++   F++G P+
Sbjct: 1   EVIMTVLHAGGKFDKNTYKVSGGLHGVGVSCVNALSKKLQVEVFQNGKMYEMGFAKGKPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            PL+   +    RGT+++F PD   F     +D   LLK  +  A+L+  +   +  ++ 
Sbjct: 61  HPLKVMGESPK-RGTKVSFWPDDSTFTVTV-YDYDVLLKRLRELAFLNRGITIHFRDER- 117

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR-GTVEWAIAWC 309
                   +   F + GG+ +++    EN++ +  +       K+GT      E A+ W 
Sbjct: 118 ----NDEHDPVSFCYEGGIASFVSYLNENKTPLFPKPIYVLGRKEGTDGTIEFEVAMQWN 173

Query: 310 EENPEITS-YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISA 366
           +   E    Y N I T +GG+H +G   ALTR + +Y +  Q  ++  I    +D+    
Sbjct: 174 DTYTENLYSYVNNIPTRQGGSHVTGFSTALTRVLNQYIKNHQILKSDKISVSGEDMREGL 233

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             ++SV +  P+F GQTK +L + D    V+    +    +L +NP  A  ++E  I  +
Sbjct: 234 TAVVSVKVPNPQFEGQTKRRLGNSDVASIVQQITGEELTTFLDENPPIARAIVEKAIIAA 293

Query: 427 EERLRRRKQREVN-RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
           + R   RK RE+  RKTA+   RLPGKL DC +      E++IVEGDSAGGSAKQ  +R 
Sbjct: 294 QAREAARKARELTLRKTALDSARLPGKLTDCQEKDPALCEIYIVEGDSAGGSAKQGGDRR 353

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDA 544
            QA+LP+RGKILNV  A  EK+  N ++  +V A GC         + LRY K+IIMTDA
Sbjct: 354 FQAILPIRGKILNVEKARLEKVLQNTEVGAMVAAFGCGIGVDNFNLDKLRYHKIIIMTDA 413

Query: 545 DVDGAHIASLL 555
           DVDG+HI +LL
Sbjct: 414 DVDGSHIRTLL 424


>gi|33620688|ref|NP_891577.1| topoisomerase II large subunit [Enterobacteria phage RB49]
 gi|33438558|gb|AAL15132.2| topoisomerase II large subunit [Enterobacteria phage RB49]
          Length = 607

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 136/657 (20%), Positives = 240/657 (36%), Gaps = 80/657 (12%)

Query: 47  SSIRILEGLEPVRMRPGMYIGGTD-----------------EKALHHLFSEVIDNAMDEV 89
           S  RIL   E V  R GMYIG T                     L  +  E+IDN++DE 
Sbjct: 2   SEFRILSDREHVLKRAGMYIGSTTYEEHQRFLFGKWTKISYVPGLVKIIDEIIDNSVDEA 61

Query: 90  IAG---YANLIEVSLDGNGFLTVVDNGRGIPVENH--PKFPNKSTLEIILTTLHAGGKFD 144
           I     +AN+I V +  N  +TV DNGRGIP      P+           T   AG  FD
Sbjct: 62  IRTNFEFANVISVDI-QNNIVTVTDNGRGIPQHMVTTPEGTQIPQPVAAWTRTKAGSNFD 120

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           ++   ++ G++GVG S+ N  SD          T  + + + G     +    K    +G
Sbjct: 121 DTN-RLTQGMNGVGSSLSNFFSDWFTGVTCDGETEMTVQCTNG--AENITWSSKPSKLKG 177

Query: 205 TRITFRPDPKIFGDKAGFD--AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
           T +TF PD   F      +     +    QS + +  ++   ++  + +++         
Sbjct: 178 TNVTFCPDFDHFEGYMMDNSVLDIVHDRLQSLSVIFPKITFKFNGKRIVSK--------- 228

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
           F     L       +E+++   + +   + E                    +  S+ N +
Sbjct: 229 FKDYAKLYNDDPFVIEDKNFSLALVPAVEGE------------------GFKSVSFANGL 270

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T  GGTH   +   L   I K   + +  +     +         ++   +    F  Q
Sbjct: 271 FTKNGGTHVDYVTDDLCEEIVK--RIKKEYKVDVTKAAVKSGLTCILIVRELPNLRFDSQ 328

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRK 441
           TK +L +            D     L +   +   ++  +I      +    K       
Sbjct: 329 TKERLTNPTGDI---KRHIDLDFKKLAKVIAKKENIIMPIIAVVLARKEAADKAAATKAA 385

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            A ++ ++   +          T LF+ EGDSA       R++      PLRGK L    
Sbjct: 386 KAAKRAKVAKHVKANLIGTDAETTLFLTEGDSAINYLISVRDQDLHGGFPLRGKTLTTWE 445

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH-IASLLLTFFY 560
               KI  N +I +++   G +      +  ++Y+ + IMTDAD DG   I   L++FF 
Sbjct: 446 QPEAKIVKNAEIFNIMAITGLQFGVDALDV-MQYKNIAIMTDADTDGIGSIKPSLISFFA 504

Query: 561 QEMYDLIEQKHLFLISPPLFRI--TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           +   +L E   +  I  P+      +G    + +D E  +   +  K        I   K
Sbjct: 505 R-WPELFEDGRIRFIKTPIIIAEPKKGDDVRWYYDLEDFENDRDNIK-----GYNIRYIK 558

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675
           GL  +  S         +   ++   + + +   ++ ++  + L    AD+R  ++Q
Sbjct: 559 GLASLTES---------DYHRVINDPVMEIITLPENYKELFDLLYSEDADQRKIWMQ 606


>gi|157683635|gb|ABV64549.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 419

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 167/430 (38%), Positives = 249/430 (57%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL       +K GT + F P  + F +   F+   L K  +  ++L+  V       ++
Sbjct: 61  APLAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD 119

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +
Sbjct: 120 GKE-------DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     +
Sbjct: 170 GFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLI 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+   
Sbjct: 230 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                RR +    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           Q +LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDAD
Sbjct: 350 QGILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHIRTLL 419


>gi|152968547|gb|ABS50288.1| topoisomerase 2 [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|157683593|gb|ABV64528.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi C]
 gi|157683609|gb|ABV64536.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi C]
 gi|157683643|gb|ABV64553.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 419

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 167/430 (38%), Positives = 250/430 (58%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL       +K GT + F P  + F +   F+   L K  +  ++L+  V       ++
Sbjct: 61  APLAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD 119

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +
Sbjct: 120 GKE-------DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     +
Sbjct: 170 GFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLI 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+   
Sbjct: 230 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                RR +    RK ++    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARRAREMTRRKGSLDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHIRTLL 419


>gi|149004062|ref|ZP_01828868.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae
           SP14-BS69]
 gi|147757963|gb|EDK64971.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae
           SP14-BS69]
          Length = 237

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 97/233 (41%), Positives = 140/233 (60%), Gaps = 12/233 (5%)

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N+
Sbjct: 5   KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 64

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E  H
Sbjct: 65  EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 124

Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++G     +  YA  +   +++ ++F K       + R+KGLGEM A Q
Sbjct: 125 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGA----TLQRYKGLGEMNADQ 180

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL+RV I      L   +  +N LMG K + R K+I++   F
Sbjct: 181 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 229


>gi|213622636|ref|ZP_03375419.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 646

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 150/414 (36%), Positives = 235/414 (56%), Gaps = 15/414 (3%)

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            +K GT + F P  + F +   F+   L K  +  ++L+  V       ++  E      
Sbjct: 2   TDKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE------ 55

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
            + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  +
Sbjct: 56  -DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCF 111

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +
Sbjct: 112 TNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPD 171

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R
Sbjct: 172 PKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAR 231

Query: 437 -EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
               RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GK
Sbjct: 232 EMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGK 291

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           ILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +L
Sbjct: 292 ILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTL 351

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           LLTFFY++M +++E+ H+++  PPL+++ +G +  Y  D+E   +        G
Sbjct: 352 LLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 405



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ LE   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 561 FEQALEWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAI----AAD 616

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 617 QLFTTLMGDAVEPRRAFIEENALKAANID 645


>gi|19909599|dbj|BAB86995.1| DNA gyrase subunit B [Halomonas halmophila]
          Length = 378

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 137/390 (35%), Positives = 211/390 (54%), Gaps = 17/390 (4%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
           D   LHH+  E++DN++DE +AGY + I V +  +  +TV DNGRGIP + H +    S 
Sbjct: 2   DGTGLHHMVFELVDNSIDEALAGYCSEIRVIIHPDESITVSDNGRGIPTDVHEE-EGVSA 60

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+EL +T+ R   +  Q +  G+P
Sbjct: 61  AEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELKLTIWRNEQVHEQVYRHGVP 120

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
           ++PL    K   + G+R+ F+P P+ F +   F    L K  +  ++L+  V      ++
Sbjct: 121 VAPLSVVGKT-EQSGSRVHFKPSPETFHN-IEFHYDVLAKRLRELSFLNSGVAIRLMDER 178

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
              E       E F++ GGLK ++     N+++++         + G     VE A+ W 
Sbjct: 179 SGKE-------ELFHYEGGLKAFVDHLNTNKTVLNPVFHFNVEREDGV---GVEIAMQWN 228

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISA 366
           +     I  Y N I   +GGTH +G R +LTR +  Y E      K  +S   DD     
Sbjct: 229 DTFAENIFCYTNNIPQRDGGTHLAGFRASLTRTLNHYIEAEGLLKKAKVSTSGDDAREGL 288

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-R 425
             I+SV + +P+F+ QTK KLVS + +  VE  +   F  YLV+ P EA  ++  +++  
Sbjct: 289 TAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGRQFAEYLVEKPNEAKSIVNKMLDAA 348

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
                 R+ +    RK A+    LPGKLAD
Sbjct: 349 RAREAARKARDMTRRKGALDIAGLPGKLAD 378


>gi|157683567|gb|ABV64515.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|157683571|gb|ABV64517.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|157683573|gb|ABV64518.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi A]
          Length = 419

 Score =  280 bits (716), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 167/430 (38%), Positives = 250/430 (58%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL       +K GT + F P  + F +   F+   L K  +  ++L+  V       ++
Sbjct: 61  APLAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD 119

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       + F++ GG+K +++   +N++ I   IF   TEK G     +E A+ W +
Sbjct: 120 GKE-------DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GIEVALQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     +
Sbjct: 170 GFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLI 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+   
Sbjct: 230 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                RR +    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHIRTLL 419


>gi|148971359|gb|ABR20217.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 417

 Score =  280 bits (716), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 168/428 (39%), Positives = 248/428 (57%), Gaps = 14/428 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD   Y+ SGGLHGVGISVVNALSD+L +T+ +   I+ Q + RG P 
Sbjct: 1   EVIMTVLHAGGKFDKEAYKFSGGLHGVGISVVNALSDKLELTIFQNGKIYYQLYHRGTPT 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
             L+     +  RGT I F PDP+IF +   F    L    +  A+L+  ++     ++ 
Sbjct: 61  ERLKVIGDTKK-RGTLIKFHPDPEIFQETTEFSFDTLSARLRELAFLNKNLRITIVDER- 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   +K EF++ GG+ ++++   + ++ +  E+   + E +   +  +E A+ + +
Sbjct: 119 ------TQKKHEFFYEGGIVSFVEHVNKTKTRLFDEVIHMQQEDE---KYVLELAMQYND 169

Query: 311 ENPEITS-YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVG 368
              E    + N I T EGGTH SG + ALT+   K        K   S  S+D+    V 
Sbjct: 170 GYGEQLYSFVNNINTVEGGTHVSGFKSALTKVCNKKGTDFGILKGNESFSSEDVREGLVC 229

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           ++S+ + EP+F GQTKTKL + + +  V++      D Y  +NP  A K+L+        
Sbjct: 230 VISMKVPEPQFEGQTKTKLGNSEVKGIVDSWAFAFLDSYFEENPAIAKKILQKAELAKRA 289

Query: 429 RLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
           R   +K R+   RKT +  + LPGKLADC+       ELFIVEGDSAGGSAKQ R+R++Q
Sbjct: 290 REAAKKARDLTRRKTVLESIILPGKLADCTDEDPVKAELFIVEGDSAGGSAKQGRDRTHQ 349

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVD 547
           A+LPLRGKILNV  A  +K+ +N+QI  L+ A+GC   +++     RY K+I+MTDADVD
Sbjct: 350 AILPLRGKILNVEKARLDKMLSNEQIQALIAAIGCGIGNEFDINKARYHKIILMTDADVD 409

Query: 548 GAHIASLL 555
           G+HI +LL
Sbjct: 410 GSHIRTLL 417


>gi|157683575|gb|ABV64519.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi A]
          Length = 419

 Score =  280 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 166/430 (38%), Positives = 249/430 (57%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL       +K GT + F P  + F +   F+   L K  +  ++L+  V       ++
Sbjct: 61  APLAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD 119

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       + F++ GG+K +++   +N++ I   IF   TEK G     +E A+ W +
Sbjct: 120 GKE-------DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GIEVALQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     +
Sbjct: 170 GFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLI 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+   
Sbjct: 230 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                RR +    RK A+    LPGKLADC +     +EL++VEGDSAGGS KQ RNR N
Sbjct: 290 AREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSTKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHIRTLL 419


>gi|155573717|gb|ABU24295.1| DNA gyrase subunit B [Shigella dysenteriae]
          Length = 419

 Score =  280 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 167/430 (38%), Positives = 250/430 (58%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    +     GT + F P  + F +   F+   L K  +  ++L+  V       ++
Sbjct: 61  APLAVTGETEK-TGTMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRD 119

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +
Sbjct: 120 GKE-------DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     +
Sbjct: 170 GFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLI 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+   
Sbjct: 230 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                RR +    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHIRTLL 419


>gi|161327339|gb|ABX60537.1| GyrB [Edwardsiella tarda]
          Length = 419

 Score =  280 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 165/430 (38%), Positives = 249/430 (57%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L + + R   +  Q +  G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGHVHEQIYRHGVPA 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL+       + GTR+ F P  + F +   F    L K  +  ++L+  V       + 
Sbjct: 61  APLKVVGDT-EQTGTRVRFWPSMETFSNVVEFQYDILAKRLRELSFLNSGVSIRLRDKRN 119

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       + F++ GG+K +++   +N++ I   +F   T K       VE A+ W +
Sbjct: 120 DRE-------DHFHYEGGIKAFVEYLNKNKTPIHPNVFYFSTMKDDI---GVEVALQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R A+TR +  Y E      K  IS   DD     +
Sbjct: 170 GFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNSYMENEGYTKKSKISATGDDAREGLI 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE+ + +    YL++NP +A  ++  +I+   
Sbjct: 230 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVESLMNERLAEYLLENPSDAKIVVGKIIDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARKAREMTRRKGALDLAGLPGKLADCQERDPAHSELYLVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHIRTLL 419


>gi|88824757|gb|ABD52424.1| gyrase B [Escherichia coli]
 gi|155573705|gb|ABU24289.1| DNA gyrase subunit B [Shigella boydii]
 gi|155573707|gb|ABU24290.1| DNA gyrase subunit B [Shigella boydii]
 gi|155573709|gb|ABU24291.1| DNA gyrase subunit B [Shigella boydii]
 gi|155573711|gb|ABU24292.1| DNA gyrase subunit B [Shigella boydii]
 gi|155573713|gb|ABU24293.1| DNA gyrase subunit B [Shigella boydii]
 gi|155573715|gb|ABU24294.1| DNA gyrase subunit B [Shigella dysenteriae]
 gi|155573719|gb|ABU24296.1| DNA gyrase subunit B [Shigella dysenteriae]
 gi|155573721|gb|ABU24297.1| DNA gyrase subunit B [Shigella dysenteriae]
 gi|155573723|gb|ABU24298.1| DNA gyrase subunit B [Shigella dysenteriae]
 gi|155573725|gb|ABU24299.1| DNA gyrase subunit B [Shigella flexneri]
 gi|155573727|gb|ABU24300.1| DNA gyrase subunit B [Shigella flexneri]
 gi|155573729|gb|ABU24301.1| DNA gyrase subunit B [Shigella flexneri]
 gi|155573731|gb|ABU24302.1| DNA gyrase subunit B [Shigella flexneri]
 gi|155573733|gb|ABU24303.1| DNA gyrase subunit B [Shigella flexneri]
 gi|155573735|gb|ABU24304.1| DNA gyrase subunit B [Shigella sonnei]
 gi|155573737|gb|ABU24305.1| DNA gyrase subunit B [Shigella sonnei]
 gi|155573739|gb|ABU24306.1| DNA gyrase subunit B [Shigella sonnei]
 gi|155573741|gb|ABU24307.1| DNA gyrase subunit B [Shigella sonnei]
 gi|155573743|gb|ABU24308.1| DNA gyrase subunit B [Shigella sonnei]
 gi|157683565|gb|ABV64514.1| gyrase B [Escherichia coli]
          Length = 419

 Score =  280 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 167/430 (38%), Positives = 250/430 (58%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    +     GT + F P  + F +   F+   L K  +  ++L+  V       ++
Sbjct: 61  APLAVTGETEK-TGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD 119

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +
Sbjct: 120 GKE-------DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     +
Sbjct: 170 GFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLI 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+   
Sbjct: 230 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                RR +    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHIRTLL 419


>gi|238694884|ref|YP_002922078.1| topoisomerase II large subunit [Enterobacteria phage JSE]
 gi|220029020|gb|ACL77955.1| topoisomerase II large subunit [Enterobacteria phage JSE]
          Length = 607

 Score =  280 bits (715), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 135/656 (20%), Positives = 239/656 (36%), Gaps = 80/656 (12%)

Query: 47  SSIRILEGLEPVRMRPGMYIGGTD-----------------EKALHHLFSEVIDNAMDEV 89
           S  RIL   E V  R GMYIG T                     L  +  E+IDN++DE 
Sbjct: 2   SEFRILSDREHVLKRAGMYIGSTTYEEHQRFLFGKWTKISYVPGLVKIIDEIIDNSVDEA 61

Query: 90  IAG---YANLIEVSLDGNGFLTVVDNGRGIPVENH--PKFPNKSTLEIILTTLHAGGKFD 144
           I     +AN+I V +  N  +TV DNGRGIP      P+           T   AG  FD
Sbjct: 62  IRTNFEFANVISVDI-QNNIVTVTDNGRGIPQHMVTTPEGTQIPQPVAAWTRTKAGSNFD 120

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           ++   ++ G++GVG S+ N  SD          T  + + + G     +    K    +G
Sbjct: 121 DTN-RLTQGMNGVGSSLSNFFSDWFTGVTCDGETEMTVQCTNG--AENITWSSKPSKLKG 177

Query: 205 TRITFRPDPKIFGDKAGFD--AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
           T++TF PD   F      +     +    QS + +  ++   ++  + +++         
Sbjct: 178 TKVTFCPDFDHFEGYMMDNSVLDIVHDRLQSLSVIFPKITFKFNGKRIVSK--------- 228

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
           F     L       +E+++   + +   + E                    +  S+ N +
Sbjct: 229 FKDYAKLYNDDPFVIEDKNFSLALVPAVEGE------------------GFKSVSFANGL 270

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T  GGTH   +   L   I K   + +  +     +         ++   +    F  Q
Sbjct: 271 FTKNGGTHVDYVTDDLCEEIVK--RIKKEYKVDVTKAAVKSGLTCILIVRELPNLRFDSQ 328

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRK 441
           TK +L +            D     L +   +   ++  +I      +    K       
Sbjct: 329 TKERLTNPTGDI---KRHIDLDFKKLAKVIAKKENIIMPIIAVVLARKEAADKAAATKAA 385

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            A ++ ++   +          T LF+ EGDSA       R++      PLRGK L    
Sbjct: 386 KAAKRAKVAKHVKANLIGTDAETTLFLTEGDSAINYLISVRDQDLHGGFPLRGKTLTTWE 445

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH-IASLLLTFFY 560
               KI  N +I +++   G +      E  ++Y+ + IMTDAD DG   I   L++FF 
Sbjct: 446 QPEAKIVKNAEIFNIMAITGLQFGVDALEV-MQYKNIAIMTDADTDGIGSIKPSLISFFA 504

Query: 561 QEMYDLIEQKHLFLISPPLFRI--TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           +   +L E   +  I  P+      +G    + +D E  +   +  K        I   K
Sbjct: 505 R-WPELFEDGRIRFIKTPIIIAEPKKGDDVRWYYDLEDFENDRDNIK-----GYNIRYIK 558

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
           GL  +  S         +   ++   + + +   ++ ++  + L    +D R  ++
Sbjct: 559 GLASLTES---------DYHRVINDPVMEIITLPENYKELFDLLYSEDSDMRKAWM 605


>gi|157683639|gb|ABV64551.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 419

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 168/430 (39%), Positives = 250/430 (58%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL       +K GT + F P  + F +   F+   L K  +  ++L+  V       ++
Sbjct: 61  APLAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD 119

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +
Sbjct: 120 GKE-------DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     +
Sbjct: 170 GFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLI 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+   
Sbjct: 230 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELPTEYLLENPSDAKIVVGKIIDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                RR +    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHIRTLL 419


>gi|167077353|gb|ABZ10898.1| DNA gyrase subunit B [Burkholderia cenocepacia]
          Length = 622

 Score =  279 bits (714), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 161/460 (35%), Positives = 243/460 (52%), Gaps = 29/460 (6%)

Query: 166 SDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKVRNKRGTRITFRPDP 213
           S  L +TV R       +F RG+             +SP+       N RGT + F  DP
Sbjct: 1   SSWLRLTVRRDGKKRFMEFHRGVAQDRVIEVVDGVEVSPMLVTGDTEN-RGTEVHFMADP 59

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IFG    +    L K  +  ++L+  V+   +  +   E         F F GG+K ++
Sbjct: 60  TIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD-------FAFAGGVKGFV 111

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   + ++ +   +F    EK G     VE A+ W +     +  + N I   +GGTH +
Sbjct: 112 EYINKTKTNLHPTVFFANGEKDGV---GVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLT 168

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           GLR A+TR I KY    +   K  +    DD+      +LSV + EP+F+ QTK KLVS 
Sbjct: 169 GLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSS 228

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRL 449
           + +  VE  +    + +L++ PI+A  +   ++E +  R   RK RE+ R+   +  + L
Sbjct: 229 EVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVGL 288

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+LNV  A  +K+ +
Sbjct: 289 PGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLS 348

Query: 510 NQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           ++QI+ LV ALGC    +    + LRY ++IIMTDADVDGAHI +LLLTF Y++M D+IE
Sbjct: 349 SEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQMPDMIE 408

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           + ++++  PPL++I  G    Y  D+      +      G
Sbjct: 409 RGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQG 448


>gi|23978223|dbj|BAC21109.1| DNA gyrase B subunit [Anabaena cylindrica]
          Length = 396

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 143/396 (36%), Positives = 212/396 (53%), Gaps = 5/396 (1%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T  + LHHL  EV+DN++DE +AG+   +EV ++ +G +TV D+GRGIPV+ HPK   KS
Sbjct: 1   TGPRGLHHLVYEVVDNSVDEALAGHCTHVEVDINADGSVTVTDDGRGIPVDIHPK-TGKS 59

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
            LE +LT LHAGGKF    Y++SGGLHGVGISVVNALS+ + VTV R N    Q++ R  
Sbjct: 60  ALETVLTVLHAGGKFGGGGYKVSGGLHGVGISVVNALSEFVEVTVWRDNKEHLQRYERSF 119

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
           P++ L+ K     + GT ITF+PD +IF     FD   L    +  AYL+  VK  ++  
Sbjct: 120 PVTELQVKPYKEARTGTSITFKPDTQIFTTSIEFDYITLSGRLRELAYLNAGVKIIFTDH 179

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +    K   P+ E + + GG+K Y+      +  +  EI   + E+    +  V      
Sbjct: 180 RLELLKSDTPKIEVYEYKGGIKEYIAYMNREKQPLHEEIIYVQGERNNV-QVEVSLQWCT 238

Query: 309 CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISA 366
                 +  + N I T +GGTH  GL+  LTR +   A      +    ++  + +    
Sbjct: 239 DAYTDNVLGFANNIRTIDGGTHLEGLKAVLTRTLNAIARKRNKIKEHESNLSGEHVREGL 298

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             ++SV + +PEF GQTKTKL + + +  V++ + +    YL  +P  A  +L+  I+  
Sbjct: 299 TAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSFVGEVLTEYLEFHPAIADSILDKAIQAF 358

Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIA 461
           +     R  RE V RK+ +    LPGKLADCS    
Sbjct: 359 KAAEAARHARELVRRKSVLESSPLPGKLADCSSRDP 394


>gi|313623958|gb|EFR94060.1| DNA topoisomerase IV, B subunit [Listeria innocua FSL J1-023]
          Length = 283

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 105/269 (39%), Positives = 154/269 (57%), Gaps = 15/269 (5%)

Query: 419 LEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLADCSQNIAHGTELFIVEGDSAG 475
           ++  ++  E R   RK RE  R    +K     L GKL        +  EL++VEGDSAG
Sbjct: 1   VKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQSRNPNKNELYLVEGDSAG 60

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           GSAKQ R+R  QA+LPLRGK++N   A  + I  N++I  ++  +G    +++  ED  Y
Sbjct: 61  GSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTIIHTVGAGVGTEFDVEDCNY 120

Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG--TKSV--YA 591
           +KV+IMTDAD DGAHI  LLLTFFY+ M  L+E   +F+  PPL+++++G   K V  YA
Sbjct: 121 DKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIALPPLYKVSRGSGKKEVIEYA 180

Query: 592 HDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651
             +E     +++  K       I R+KGLGEM A QL ET M+ + RTL+RV ++     
Sbjct: 181 WTDEELDAAIQKIGK----GYMIQRYKGLGEMNADQLWETTMNPDTRTLIRVRVDD---- 232

Query: 652 LKDTQDSINKLMGTKADERFKFIQERASF 680
               +  +  LMG K + R ++I++   F
Sbjct: 233 SARAERRVATLMGDKVEPRRQWIEKHVEF 261


>gi|165968986|gb|ABY76049.1| topoisomerase IV subunit ParE [Parachlamydia acanthamoebae]
          Length = 478

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 151/526 (28%), Positives = 248/526 (47%), Gaps = 56/526 (10%)

Query: 107 LTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALS 166
           ++V D GRGIP+           +   ++ ++ G K+++  ++ S GL+GVG   VNALS
Sbjct: 2   ISVRDFGRGIPLGK---------VIDCVSQINTGAKYNDDVFQFSVGLNGVGTKAVNALS 52

Query: 167 DELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAAR 226
               V   R+       FS+G  +   EK +K     GT + F PD +IF     F+   
Sbjct: 53  SHFLVRSHREGKSMEAVFSQGKLIR--EKSQKTSEPDGTYVEFIPDKEIFKKFR-FEPEY 109

Query: 227 LLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSE 286
           + K     AYL+  +   ++     +E              GL   L  ++    L    
Sbjct: 110 IQKRLWHYAYLNTGLILEYNGQDIYSE-------------NGLLDLLNEEVTEDRLYEPL 156

Query: 287 IFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY 345
            + GK          +E+A    +       S+ N   T +GGTH S  R  + +G+ +Y
Sbjct: 157 YYRGK---------LLEFAFLHTQSYGESYFSFVNGQYTSDGGTHLSAFREGILKGVNEY 207

Query: 346 AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
           +     K+  +    DL    VG ++V I++P F  QTK KL + + +  +   ++D   
Sbjct: 208 S-----KK--NFQGVDLREGIVGTVAVRIKDPVFESQTKNKLGNTELRGPLVQEVKDAVV 260

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHG-- 463
           + L +N   A  ++E ++   + R      ++  ++   +      KL DC  +      
Sbjct: 261 NMLYKNSSTANSIIERIVFNEKLRKELAAVKKEAKEKQKKISFKIPKLRDCKYHAQDKAD 320

Query: 464 ----TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
               T +F+ EGDSA  S   +R+   QAV  LRGK LNV     +++  N+++ +L+ A
Sbjct: 321 VGEKTMIFLTEGDSASASIVASRDPLTQAVFSLRGKPLNVHGMKIDQLYKNEEMFNLMSA 380

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           L          E+LRY+KVI+ TDADVDG HI +LL+TFF      L+   HLF++  PL
Sbjct: 381 LNIE----DDIENLRYQKVILATDADVDGMHIRNLLITFFLTYFEGLVLNGHLFILETPL 436

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           F++    K++Y + EE + K +++ KK     IE++RFKGLGE+  
Sbjct: 437 FKVRNREKTLYCYSEEERDKAIKQLKK----GIEVTRFKGLGEISP 478


>gi|330685620|gb|EGG97264.1| DNA gyrase, B subunit, C-terminal domain protein [Staphylococcus
           epidermidis VCU121]
          Length = 304

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 104/281 (37%), Positives = 154/281 (54%), Gaps = 15/281 (5%)

Query: 407 YLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLADCSQNIAHG 463
           YL +    +  L++  I+  + R   RK RE  R     K     L GKL          
Sbjct: 4   YLEEKGQLSKSLVKKAIKAQQAREAARKAREDTRSGKKNKRKDTLLSGKLTPAQSKNTEK 63

Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523
            EL++VEGDSAGGSAK  R+R  QA+LPLRGK++N   A  E I  N++I  ++  +G  
Sbjct: 64  NELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAG 123

Query: 524 TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT 583
             ++++ ED  Y ++IIMTDAD DGAHI  LLLTFF++ M  L++   +F+  PPL+++ 
Sbjct: 124 VGNEFKIEDSNYSRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLE 183

Query: 584 QG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           +G     K  YA  ++   K+ ++  K       + R+KGLGEM   QL ET M+   RT
Sbjct: 184 KGKGKSKKVEYAWTDDELDKLQKQLGK----GFSLQRYKGLGEMNPEQLWETTMNPETRT 239

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L+RV++  ++ S K     +  LMG K   R ++I+    F
Sbjct: 240 LIRVQVEDEVRSSKR----VTTLMGDKVAPRREWIENHVEF 276


>gi|31071471|dbj|BAC76784.1| DNA gyrase B subunit [Anabaena planctonica]
          Length = 396

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 143/396 (36%), Positives = 214/396 (54%), Gaps = 5/396 (1%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T  + LHHL  EV+DN++DE +AGY   +EV ++ +G +TV D+GRGIP + HPK   KS
Sbjct: 1   TGPRGLHHLVYEVVDNSVDEALAGYCTHVEVDINADGSVTVTDDGRGIPTDIHPK-TGKS 59

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
            LE +LT LHAGGKF    Y++SGGLHGVGISVVNALS+ + VTV R + I +Q++ R  
Sbjct: 60  ALETVLTVLHAGGKFGGGGYKVSGGLHGVGISVVNALSEFVEVTVWRDHKIHTQRYERSF 119

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
           P++ L  K    ++ GT ITF+PD +IF     FD   L    +  AYL+  VK  ++  
Sbjct: 120 PVTELVAKPYKEDRTGTSITFKPDTQIFTTSIEFDYITLSGRLRELAYLNAGVKITFTDH 179

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +    K  IP+ E + + GG K Y+     ++  +  EI   + E+    +  V      
Sbjct: 180 RLELLKSDIPKIETYEYKGGFKEYIAYMNRDKQPLHEEIIYVQGERNNV-QVEVSLQWCT 238

Query: 309 CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISA 366
                 +  + N I T +GGTH  GL+  LTR +   A      +    ++  + +    
Sbjct: 239 DAYTDNVLGFANNIRTIDGGTHLEGLKAVLTRTLNATARKRNKIKENESNLSGEHVREGL 298

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             ++SV + +PEF GQTKT+L + + +  V++ + +    YL  +P  A  +L+  I+  
Sbjct: 299 TAVISVKVPDPEFEGQTKTRLGNTEVRGIVDSFVGEVLTEYLDFHPAIADAILDKAIQAF 358

Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIA 461
           +     R  RE V RK+ +    LPGKLADCS    
Sbjct: 359 KAAEAARHARELVRRKSVLESSPLPGKLADCSSRDP 394


>gi|23978267|dbj|BAC21121.1| DNA gyrase B subunit [Nodularia sp. PCC 73104]
          Length = 396

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 142/396 (35%), Positives = 210/396 (53%), Gaps = 5/396 (1%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T  + LHHL  EV+DN++DE +AG+   IEV ++ +G +TV D+GRGIP++ H +   KS
Sbjct: 1   TGPRGLHHLVYEVVDNSIDEALAGHCTHIEVDINADGSVTVTDDGRGIPIDTHSR-TGKS 59

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
            LE +LT LHAGGKF    Y++SGGLHGVG+SVVNALSD L VTV R N +  Q++ RG+
Sbjct: 60  ALETVLTVLHAGGKFGGGGYKVSGGLHGVGLSVVNALSDVLEVTVWRDNKVHVQRYERGV 119

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
           P++ L  K     K GT I F PD +IF +   FD   +    +  AYL+  VK  +   
Sbjct: 120 PVTELIAKPDKEGKTGTSIKFNPDSQIFINTVEFDYITIAGRLRELAYLNAGVKIIFGDH 179

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +    K   P  E + + GG+K Y+     ++  +  EI     E+    +  V      
Sbjct: 180 RLELLKSDTPRIETYEYKGGIKEYIAYMNRDKQPLHEEIIYVHGERNNV-QVEVSLQWCT 238

Query: 309 CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISA 366
                 +  + N I T +GGTH  GL+  LTR +   A      +    ++  + +    
Sbjct: 239 DAYTDNVLGFANNIRTIDGGTHLEGLKAVLTRTLNAIARKRNKIKENESNLSGEHVREGL 298

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             ++SV + +PEF GQTKTKL + + +  V++ + +    YL  +P  A  +L+  I+  
Sbjct: 299 TAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLSEYLEFHPGIADSILDKAIQAF 358

Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIA 461
           +     R  RE V RK+ +    LPGKLADCS    
Sbjct: 359 KAAEAARHARELVRRKSVLESSPLPGKLADCSSRDP 394


>gi|190148874|gb|ACE63412.1| DNA gyrase B subunit [Pseudonocardia sp. S053]
          Length = 433

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 159/439 (36%), Positives = 242/439 (55%), Gaps = 20/439 (4%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+ +Y +SGGLHGVG+SVVNALS  L V + R   ++ Q +    P 
Sbjct: 1   EVIMTVLHAGGKFDDKSYAVSGGLHGVGVSVVNALSSALDVEIHRDKKVWRQHYEHSRPG 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
              +   +   + GT ITF  DP IF     ++   + +  Q  A+L+  +      ++ 
Sbjct: 61  PLRK--GEDTIRTGTSITFWADPDIFETT-AYNLETISRRLQEMAFLNKGLTIVLRDERN 117

Query: 251 IA-EKYGIPEKE---------EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
              E+   P+ E          F++PGGL+ ++     ++  I  ++     E +     
Sbjct: 118 GESEEAAEPDAEGYVAKVKETTFHYPGGLEDFVAHLNRSKDPIHKKLVAFSGEAENHQ-- 175

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISI 357
            VE A+ W       + ++ NTI T EGGTHE G R ALT  + +YA   +    +  ++
Sbjct: 176 -VEVAMQWNSGYAESVYTFANTINTHEGGTHEEGFRAALTTTVNRYAREKKLLKDKDPAL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+SV +REP+F GQTKTKL + + +  V+    +    +  +NP EA  
Sbjct: 235 SGDDIREGLAAIVSVKVREPQFEGQTKTKLGNTEVKSFVQRVSNEWLADWFERNPTEAKT 294

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   ++ ++ RL  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGG
Sbjct: 295 IVNKAVQSAQARLAARKARELVRRKSAGDIGGLPGKLADCRSTDPSKSEVYIVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LP+RGKI+NV  A  +++  N ++  ++ ALG     ++    LRY 
Sbjct: 355 SAKSGRDSMFQAILPIRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDLAKLRYH 414

Query: 537 KVIIMTDADVDGAHIASLL 555
           K+++MTDADVDG+HI +LL
Sbjct: 415 KIVLMTDADVDGSHIRTLL 433


>gi|149787399|gb|ABR29847.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
          Length = 418

 Score =  279 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 167/429 (38%), Positives = 249/429 (58%), Gaps = 16/429 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL       +K GT + F P  + F +   F+   L K  +  ++L+  V       ++
Sbjct: 61  APLAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD 119

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +
Sbjct: 120 GKE-------DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     +
Sbjct: 170 GFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLI 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+   
Sbjct: 230 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                RR +    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDAD 409

Query: 546 VDGAHIASL 554
           VDG+HI +L
Sbjct: 410 VDGSHIRTL 418


>gi|309806043|ref|ZP_07700066.1| DNA gyrase, B subunit, C-terminal domain protein [Lactobacillus
           iners LactinV 03V1-b]
 gi|308167562|gb|EFO69718.1| DNA gyrase, B subunit, C-terminal domain protein [Lactobacillus
           iners LactinV 03V1-b]
          Length = 283

 Score =  279 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 113/279 (40%), Positives = 156/279 (55%), Gaps = 14/279 (5%)

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR--LPGKLADCSQNIAHGTE 465
           +++N   A KL++      E R   +K R+ +R    RK +  L GKL           E
Sbjct: 1   MMENGELAQKLVQKAQRAREAREAAKKARDESRSGKKRKKKEVLSGKLTPAQSRNPEKNE 60

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
           LF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LN   A  + I  N++I  ++  +G    
Sbjct: 61  LFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKARLQDIFKNEEINTMIHTIGAGVG 120

Query: 526 SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG 585
             +   D  Y K+IIMTDAD DGAHI  LLLTFFY+ M  +IE   +++  PPL+++ +G
Sbjct: 121 PDFEIADANYNKIIIMTDADTDGAHIQILLLTFFYRYMKPMIEAGRVYIALPPLYKLEKG 180

Query: 586 T----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
                +  Y+  +E  QK ++EF K       + RFKGLGEM A QL ET M+ N RTL+
Sbjct: 181 QGKNVEIKYSWTDEELQKDVKEFGK----GYSLQRFKGLGEMNADQLWETTMNPNTRTLI 236

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           RV+I+         +  +  LMG K   R K+I E   F
Sbjct: 237 RVKIDD----AALAERRVTTLMGDKVAARRKWIDENVKF 271


>gi|152968553|gb|ABS50291.1| topoisomerase 2 [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
 gi|157683563|gb|ABV64513.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi A]
          Length = 419

 Score =  279 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 166/430 (38%), Positives = 248/430 (57%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGG  D+++Y++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P 
Sbjct: 1   EVIMTVLHAGGNLDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL       +K GT + F P  + F +   F+   L K  +  ++L+  V       ++
Sbjct: 61  APLAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD 119

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +
Sbjct: 120 GKE-------DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     +
Sbjct: 170 GFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNSYMDKEGYSKKAKVSATGDDAREGLI 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+   
Sbjct: 230 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                RR +    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHIRTLL 419


>gi|148971441|gb|ABR20258.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 419

 Score =  279 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 167/430 (38%), Positives = 250/430 (58%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    +     GT + F P  + F +   F+   L K  +  ++L+  V       ++
Sbjct: 61  APLAVTGETEK-TGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD 119

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +
Sbjct: 120 GKE-------DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDG---XGVEVALQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     +
Sbjct: 170 GFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLI 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+   
Sbjct: 230 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                RR +    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHIRTLL 419


>gi|261599947|dbj|BAI45224.1| DNA gyrase beta-subunit [Pullulanibacillus naganoensis]
          Length = 419

 Score =  279 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 178/429 (41%), Positives = 260/429 (60%), Gaps = 14/429 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD   Y++SGGLHGVG SVVNALS+EL V V  +  I  Q + RG+P 
Sbjct: 1   EVIMTVLHAGGKFDGGGYKVSGGLHGVGASVVNALSEELWVKVYLKGNIHYQVYKRGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           S LE      +K GT I F PDP+IF +   F+   L K  +  A+L+  ++     ++E
Sbjct: 61  SDLEIIGDT-DKTGTMIHFIPDPEIFTETTVFEFDILAKRIKELAFLNRGLRITLEDERE 119

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             +K      + +++ GG+K++++   + + ++  E    + EK G    +VE A+ + +
Sbjct: 120 NGKK------KSYFYEGGIKSFVKDLNKQKDVLHEEPIYVEGEKDGI---SVEVAMQYND 170

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAV 367
               +I SY N I T EGGTHE G + ALTR I  YA+ +Q  +    +++ DD+     
Sbjct: 171 GYTSQIYSYANNIHTHEGGTHEFGFKTALTRVINDYAKKSQIFKESDPNLMGDDVREGLT 230

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERS 426
            I+SV   +P+F GQTKTKL + +A+   E+   + F  +L++NP  A K+++  ++   
Sbjct: 231 AIVSVKHPDPQFEGQTKTKLGNTEARTITESLFGEKFARFLIENPDVARKIVDKGLMASR 290

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                ++ +    RK+A+    LPGKLADCS   A  +E++IVEGDSAGGSAKQ R+R  
Sbjct: 291 ARAAAKKARELTRRKSALEVSALPGKLADCSSKDAAISEIYIVEGDSAGGSAKQGRDRHF 350

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADV 546
           QA+LPLRGKILNV  A  +KI +N +I  ++ ALGC   + +  E  RY KVIIMTDADV
Sbjct: 351 QAILPLRGKILNVEKARLDKILSNNEIRAIITALGCGVSTDFDIEKARYHKVIIMTDADV 410

Query: 547 DGAHIASLL 555
           DG+HI +LL
Sbjct: 411 DGSHIRTLL 419


>gi|7107361|gb|AAF36388.1|AF221694_1 GyrB [Yersinia pestis]
          Length = 226

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 88/235 (37%), Positives = 143/235 (60%), Gaps = 10/235 (4%)

Query: 49  IRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFL 107
           I++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V++  +  +
Sbjct: 1   IKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEILVTIHADNSV 60

Query: 108 TVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSD 167
           +V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+
Sbjct: 61  SVQDDGRGIPTGMHDE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSE 119

Query: 168 ELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARL 227
           +L + + R+  +  Q +  G+P +PL+   +   + GT + F P  + F +   F    L
Sbjct: 120 KLELVIRREGKVHEQTYKMGVPQAPLKVVGET-EQTGTTVRFWPSFQTFTNNTEFQYEIL 178

Query: 228 LKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
            K  +  ++L+  V       +   E       + F++ GG+K +++   +N++ 
Sbjct: 179 AKRLRELSFLNSGVSIKLKDKRNDKE-------DHFHYEGGIKAFVEYLNKNKNP 226


>gi|23978259|dbj|BAC21119.1| DNA gyrase B subunit [Xenococcus sp. PCC 7307]
          Length = 395

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 135/400 (33%), Positives = 207/400 (51%), Gaps = 14/400 (3%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T  K LHHL  EV+DN++DE +AG+   IEV ++ +G +TV D+GRGIP   H K   KS
Sbjct: 1   TGPKGLHHLVYEVVDNSIDEALAGFCTHIEVDINADGSITVTDDGRGIPTGIHSK-TGKS 59

Query: 129 TLEIILTTLHA--GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            LE ++T LHA        S Y++SGGLHGVG+SVVNALS  + VTV R   +  Q++ +
Sbjct: 60  ALETVMTVLHAGGKFGGAGSGYKVSGGLHGVGVSVVNALSKLVEVTVWRDRKVHQQRYEK 119

Query: 187 GIPLSP--LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244
           G P     +E  ++  N+ GT + F PD  IF +   F+   L K  +  AYL+  +K  
Sbjct: 120 GKPQGSLVVEPNKEQPNRTGTAVHFVPDNTIFTETTVFEYEVLAKRLKELAYLNAGIKIT 179

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
           +S  +E         ++ F + GG+K Y++     +  +  +I     EK G     V  
Sbjct: 180 FSDRRE-----PEIRQDVFCYEGGIKEYVEYMTLEKDPLHQDIIYVNKEKNGVT-VEVAL 233

Query: 305 AIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDL 362
                  +  +  + N I T +GGTH  GL+  LTR +  +A      +    ++  +++
Sbjct: 234 QWCIDAYSDNLLGFANNIRTIDGGTHLEGLKTVLTRTMNSFARKRNKIKDNESNLGGENV 293

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
                G++SV + +PEF GQTKTKL + + +  V++ + +  + YL  N      ++E  
Sbjct: 294 REGLTGVVSVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLNDYLEFNLSVGDAIIEKA 353

Query: 423 IERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIA 461
           I+  +     R  RE V RK+ +    LPGKLADCS    
Sbjct: 354 IQSFKAAEAARHARELVRRKSVLESSPLPGKLADCSTRDP 393


>gi|157683569|gb|ABV64516.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi A]
          Length = 419

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 168/430 (39%), Positives = 249/430 (57%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL       +K GT + F P  + F +   F+   L K  +  ++L+  V       ++
Sbjct: 61  APLAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD 119

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +
Sbjct: 120 GKE-------DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     +
Sbjct: 170 GFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLI 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+   
Sbjct: 230 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                RR +    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY   IIMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSFIIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHIRTLL 419


>gi|224036404|pdb|3FOE|C Chain C, Structural Insight Into The Quinolone-Dna Cleavage Complex
           Of Type Iia Topoisomerases
 gi|224036405|pdb|3FOE|D Chain D, Structural Insight Into The Quinolone-Dna Cleavage Complex
           Of Type Iia Topoisomerases
 gi|224036412|pdb|3FOF|C Chain C, Structural Insight Into The Quinolone-Dna Cleavage Complex
           Of Type Iia Topoisomerases
 gi|224036413|pdb|3FOF|D Chain D, Structural Insight Into The Quinolone-Dna Cleavage Complex
           Of Type Iia Topoisomerases
 gi|262118794|pdb|3K9F|C Chain C, Detailed Structural Insight Into The Quinolone-Dna
           Cleavage Complex Of Type Iia Topoisomerases
 gi|262118795|pdb|3K9F|D Chain D, Detailed Structural Insight Into The Quinolone-Dna
           Cleavage Complex Of Type Iia Topoisomerases
 gi|295789388|pdb|3KSA|C Chain C, Detailed Structural Insight Into The Dna Cleavage Complex
           Of Type Iia Topoisomerases (Cleaved Form)
 gi|295789389|pdb|3KSA|D Chain D, Detailed Structural Insight Into The Dna Cleavage Complex
           Of Type Iia Topoisomerases (Cleaved Form)
 gi|295789396|pdb|3KSB|C Chain C, Detailed Structural Insight Into The Dna Cleavage Complex
           Of Type Iia Topoisomerases (Re-Sealed Form)
 gi|295789397|pdb|3KSB|D Chain D, Detailed Structural Insight Into The Dna Cleavage Complex
           Of Type Iia Topoisomerases (Re-Sealed Form)
 gi|295789472|pdb|3LTN|C Chain C, Inhibitor-Stabilized Topoisomerase Iv-Dna Cleavage Complex
           (S. Pneumoniae)
 gi|295789473|pdb|3LTN|D Chain D, Inhibitor-Stabilized Topoisomerase Iv-Dna Cleavage Complex
           (S. Pneumoniae)
          Length = 268

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 101/251 (40%), Positives = 146/251 (58%), Gaps = 12/251 (4%)

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
              + + K    K  L GKL           EL++VEGDSAGGSAKQ R+R  QA+LPLR
Sbjct: 18  DDDDKHMKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLR 77

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIAS 553
           GK++N A A    I  N++I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +
Sbjct: 78  GKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQT 137

Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGK 609
           LLLTFFY+ M  L+E  H+++  PPL+++++G     +  YA  +   +++ ++F K   
Sbjct: 138 LLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGA- 196

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669
               + R+KGLGEM A QL ET M+   RTL+RV I      L   +  +N LMG K + 
Sbjct: 197 ---TLQRYKGLGEMNADQLWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEP 249

Query: 670 RFKFIQERASF 680
           R K+I++   F
Sbjct: 250 RRKWIEDNVKF 260


>gi|313621661|gb|EFR92452.1| DNA gyrase subunit B [Listeria innocua FSL S4-378]
          Length = 286

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 101/277 (36%), Positives = 161/277 (58%), Gaps = 10/277 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
            ++ +Y+   I++LEGLE VR RPGMYIG T ++ LHHL  E++DNA+DE +AG+   IE
Sbjct: 11  ESASDYNEDQIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVWEIVDNAIDEALAGFCTEIE 70

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           ++++ +  +TV DNGRGIP   + K   + T+E+I T LHAGGKF    Y++SGGLHGVG
Sbjct: 71  ITIEADNSITVRDNGRGIPTGINEKI-GRPTVEVIFTVLHAGGKFGGGGYKVSGGLHGVG 129

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS  L V V R+   + Q+F RG  +  +E + +  + RGT + F PDP+IF +
Sbjct: 130 ASVVNALSTSLEVYVHREGQKYYQRFERGDVVMDMEVQGET-DYRGTIVHFTPDPQIFTE 188

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              FD   L   T+  A+L+  +       +E  +      +++F++ GG+++Y++   +
Sbjct: 189 TTEFDFDTLRTRTRELAFLNRGLTISIEDKREEHK-----VRKDFHYEGGIRSYVEHLNK 243

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI 315
            + +I       + E+       VE ++ +       
Sbjct: 244 AKDVIHEPPIYLEGERDDIM---VEISMQYNTGFSSN 277


>gi|23978237|dbj|BAC21113.1| DNA gyrase B subunit [Synechococcus leopoliensis]
 gi|31071469|dbj|BAC76783.1| DNA gyrase B subunit [Synechococcus sp. PCC 7942]
          Length = 396

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 148/396 (37%), Positives = 217/396 (54%), Gaps = 5/396 (1%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T  K LHHL  EV+DNA+DE +AGY N I+V L  +G   V DNGRGIP + HP+   KS
Sbjct: 1   TGPKGLHHLVYEVVDNAVDEALAGYCNTIDVRLLEDGSCQVTDNGRGIPTDIHPQ-TGKS 59

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
            LE +LT LHAGGKF    Y++SGGLHGVG+SVVNALS+ + VTV R+     Q+F +G 
Sbjct: 60  ALETVLTILHAGGKFGGGGYKVSGGLHGVGVSVVNALSEYVEVTVWREGKTHQQRFEQGN 119

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
           P+  L+      ++RGT++ F+PD  IF +   FD   L    +  AYL+  V+  ++ +
Sbjct: 120 PIGELQVAPDADDRRGTQVRFKPDATIFSETTEFDYGTLASRLKELAYLNAGVRIDFTDE 179

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +    K   P +E +YF GG++ Y+     ++  + SEI   ++EK G  +         
Sbjct: 180 RLQLTKNHEPHQETYYFEGGIREYVAYMNTDKQALHSEIIFVQSEKDGV-QVEAALQWCV 238

Query: 309 CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISA 366
              +  I  + N I T +GGTH  GL+  LTR +   A     ++    ++  +++    
Sbjct: 239 DAYSDNILGFANNIRTIDGGTHIEGLKTVLTRTMNTIARKRNKRKDADNNLSGENIREGL 298

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             I+SV + +PEF GQTKTKL + + +  V+  + +    YL  +P  A  +LE  I+  
Sbjct: 299 TAIVSVKVPDPEFEGQTKTKLGNTEVRGIVDTLVGETLTEYLEFHPSVADLILEKAIQAF 358

Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIA 461
                 R+ RE V RK+ +    LPGKLADCS    
Sbjct: 359 NAAEAARRARELVRRKSVLESSTLPGKLADCSSRDP 394


>gi|23978220|dbj|BAC21108.1| DNA gyrase B subunit [Nostoc linckia]
          Length = 396

 Score =  277 bits (708), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 140/396 (35%), Positives = 211/396 (53%), Gaps = 5/396 (1%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T  + LHHL  EV+DN++DE +AGY   IEV ++ +G +TV D+GRGIP + H +   KS
Sbjct: 1   TGPRGLHHLVYEVVDNSIDEALAGYCTHIEVDINADGSVTVTDDGRGIPTDTHSR-TGKS 59

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
            LE ++T LHAGGKF    Y++SGGLHGVGISVVNALS+ + VTV R   +  Q++ RG 
Sbjct: 60  ALETVMTVLHAGGKFGGGGYKVSGGLHGVGISVVNALSEIVEVTVWRDKKVHIQRYERGA 119

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
           P++ L+ K     + GT +TF+PD +IF     FD   L    +  AYL+  VK  ++  
Sbjct: 120 PVTDLQVKPYKEARTGTSVTFKPDSQIFTTGIEFDYITLSGRLRELAYLNAGVKITFTDH 179

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +    K   P+ E + + GG+K Y+      +  +  EI   + E+    +  V      
Sbjct: 180 RLELLKSDTPKVESYEYKGGIKEYIAYMNREKQPLHEEIIYVQGERNNV-QVEVSLQWCT 238

Query: 309 CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISA 366
                 +  + N I T +GGTH  GL+  LTR +   A      +    ++  + +    
Sbjct: 239 DAYTDNVLGFANNIRTVDGGTHLEGLKAVLTRTLNAIARKRNKIKENEPNLSGEHVREGL 298

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             ++SV + +PEF GQTKTKL + + +  V++ + +    YL  +P  A  +L+  I+  
Sbjct: 299 TAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFHPSIADAILDKAIQAF 358

Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIA 461
           +     R  RE V RK+ +    LPGKLADCS    
Sbjct: 359 KAAEAARHARELVRRKSVLESSPLPGKLADCSSRDP 394


>gi|23978230|dbj|BAC21111.1| DNA gyrase B subunit [Anabaena variabilis]
          Length = 396

 Score =  277 bits (708), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 136/396 (34%), Positives = 214/396 (54%), Gaps = 5/396 (1%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T  + LHHL  EV+DN++DE +AGY   IEV ++ +G + V D+GRGIP++ H +   KS
Sbjct: 1   TGPRGLHHLVYEVVDNSIDEALAGYCTHIEVEINADGSVAVTDDGRGIPIDTHSR-TGKS 59

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
            LE ++T LHAGGKF    Y++SGGLHGVGISVVNALS+ + VTV R   + +Q++ RG+
Sbjct: 60  ALETVMTVLHAGGKFGGGGYKVSGGLHGVGISVVNALSEVVEVTVWRDKKVHTQRYERGV 119

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
           P++ L        + GT +TF+PD +IF +   FD   +    +  AYL+  VK  ++ +
Sbjct: 120 PVTELITNPYKEARTGTSVTFKPDTQIFTNSIEFDYITISGRLRELAYLNAGVKITFTDN 179

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +    K   P+ E + + GG+K Y+     ++  +  EI   + E+    +  V      
Sbjct: 180 RLELLKSDTPKVESYEYKGGIKEYIAYMNRDKQPLHEEIIYVQGERNNV-QIEVSLQWCT 238

Query: 309 CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISA 366
                 +  + N I T +GGTH  GL+  LTR +   A      +    ++  + +    
Sbjct: 239 DAYTDNVLGFANNIRTIDGGTHLEGLKAVLTRTLNTIARKRNKIKEHEPNLSGEHVREGL 298

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             ++SV + +PEF GQT+TKL + + +  V++ + +    YL  +P  A  +L+  I+  
Sbjct: 299 TAVISVKVPDPEFEGQTQTKLGNTEVRGIVDSLVGEVLTEYLEFHPGIADSILDKAIQAF 358

Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIA 461
           +     R  RE V RK+ +    LPGKLADCS    
Sbjct: 359 KAAEAARHARELVRRKSVLESSPLPGKLADCSSRDP 394


>gi|161327351|gb|ABX60538.1| GyrB [Edwardsiella tarda]
          Length = 419

 Score =  277 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 165/430 (38%), Positives = 249/430 (57%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L + + R   +  Q +  G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLGLVIRRDGHVHEQIYHHGVPA 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL+       + GTR+ F P  + F +   F    L K  +  ++L+  V       + 
Sbjct: 61  APLKMVGDT-EQTGTRVRFWPSMQTFSNVVEFQYDILAKRLRELSFLNSGVSIRLRDKRN 119

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       + F++ GG+K +++   +N++ I   +F   T K       VE A+ W +
Sbjct: 120 DRE-------DHFHYEGGIKAFVEYLNKNKTPIHPNVFYFSTMKDDI---GVEVALQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R A+TR +  Y E      K  IS   DD     +
Sbjct: 170 GFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNSYMESEGYTKKNKISATGDDAREGLI 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE+ + +    YL++NP +A  ++  +I+   
Sbjct: 230 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVESLMNERLAEYLLENPNDAKIVVGKIIDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARKAREMTRRKGALDLAGLPGKLADCQERDPAHSELYLVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHIRTLL 419


>gi|23978211|dbj|BAC21105.1| DNA gyrase B subunit [Anabaena variabilis]
          Length = 396

 Score =  277 bits (707), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 139/396 (35%), Positives = 213/396 (53%), Gaps = 5/396 (1%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T  + LHHL  EV+DN++DE +AGY   IEV ++ +G +TV D+GRGIP + H +   KS
Sbjct: 1   TGPRGLHHLVYEVVDNSIDEALAGYCTHIEVDINADGSVTVTDDGRGIPTDTHSR-TGKS 59

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
            LE ++T LHAGGKF    Y++SGGLHGVGISVVNALS+ + VTV R   +  Q++ RGI
Sbjct: 60  ALETVMTVLHAGGKFGGGGYKVSGGLHGVGISVVNALSEVVEVTVWRDKKVHIQRYERGI 119

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
           P++ L  K     + GT ++F+PD +IF +   FD   L    +  AYL+  VK  ++ +
Sbjct: 120 PVTELIAKPYKEARTGTSVSFKPDSQIFTNSIEFDYITLSSRLRELAYLNAGVKITFTDN 179

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +    K   P+ E + + GG+K Y+     ++  +  EI   + E+    +  V      
Sbjct: 180 RLELLKSDTPKVESYEYKGGIKEYIAYMNRDKQPLHEEIIYVQGERNNV-QIEVSLQWCT 238

Query: 309 CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISA 366
                 +  +   I T +GGTH  GL+  LTR +   A      +    ++  + +    
Sbjct: 239 DAYTDNVLGFATNIRTIDGGTHLEGLKAVLTRTLNTIARKRNKIKENEANLSGEHVREGL 298

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             ++SV + +PEF GQTKTKL + + +  V++ + +    YL  +P  A  +L+  I+  
Sbjct: 299 TAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFHPGIADAILDKAIQAF 358

Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIA 461
           +     R  RE V RK+ +    LPGKLADCS    
Sbjct: 359 KAAEAARHARELVRRKSVLESSPLPGKLADCSSRDP 394


>gi|89160899|gb|ABD62993.1| DNA gyrase subunit B [Lactobacillus brevis]
          Length = 319

 Score =  277 bits (707), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 120/328 (36%), Positives = 180/328 (54%), Gaps = 14/328 (4%)

Query: 53  EGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDN 112
           EGLE VR RPGMYIG T  + LHHL  E++DN +DE +AG+A+ I V+++ +  +TV DN
Sbjct: 1   EGLEAVRKRPGMYIGSTSSQGLHHLVWEIVDNGIDEALAGFADEIHVTVNQDNSITVTDN 60

Query: 113 GRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVT 172
           GRGIPV+   K   K  LE + T LHAGGKF    Y++SGGLHGVG SVVNALS +L V 
Sbjct: 61  GRGIPVDIQKK-TGKPALETVYTILHAGGKFGGGGYKVSGGLHGVGASVVNALSTDLEVQ 119

Query: 173 VARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V R    ++  F  G   +P+   E+   +++ GT + F PDP IF +   FD   L   
Sbjct: 120 VIRGGKKYAIAFDHGHVKTPMHVIEEGLPQDQHGTIVHFLPDPDIFRETTVFDIKTLTTR 179

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  A+L+  ++     ++        P +E+F + GG++ Y+    EN+  +       
Sbjct: 180 IRELAFLNKGLRITIRDER-----PEKPTEEDFLYEGGIRHYVDYLNENKETLFEPPIYV 234

Query: 291 KTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
           + ++ G    TVE A+ + ++      ++ N I T EGGTHE G + ALTR +  YA   
Sbjct: 235 EGQENGI---TVEVALQYTDDYHNNLLTFTNNIHTYEGGTHEEGFKRALTRVVNDYARQN 291

Query: 350 QNKRA--ISIISDDLMISAVGILSVFIR 375
           +  +    ++  DD+      ++SV   
Sbjct: 292 KLMKDNEANLTGDDVREGLTAVVSVKHP 319


>gi|31071473|dbj|BAC76785.1| DNA gyrase B subunit [Tolypothrix sp. IAM M-259]
          Length = 396

 Score =  276 bits (706), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 142/396 (35%), Positives = 212/396 (53%), Gaps = 5/396 (1%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T  + LHHL  EV+DN++DE +AGY   +EV ++ +G +TV D+GRGIP + HPK   KS
Sbjct: 1   TGPRGLHHLVYEVVDNSIDEALAGYCTHVEVDINADGSVTVTDDGRGIPTDLHPK-TGKS 59

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
            LE +LT LH GGKF    Y++SGGLHGVGISVVNALS+ + VTV R   +  Q++ RGI
Sbjct: 60  ALETVLTVLHTGGKFGGGGYKVSGGLHGVGISVVNALSEVVEVTVWRDKKVHIQRYERGI 119

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
           P + L+ K     + GT +TF+PD +IF     FD   L    +  AYL+  VK  ++ +
Sbjct: 120 PATELQTKPYKEARTGTSVTFKPDTQIFTTGIEFDYITLAGRLRELAYLNAGVKITFTDN 179

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +    K   P+ E + + GG+K Y+      +  +  EI   + E+    +  V      
Sbjct: 180 RLELLKSDTPKVETYEYKGGIKEYVTYMNREKQPLHEEIIYVQGERSNV-QVEVALQWCT 238

Query: 309 CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISA 366
                 +  + N I T +GGTH  GL+  LTR +   A      +    ++  + +    
Sbjct: 239 DAYTDNVLGFANNIRTVDGGTHLEGLKAVLTRTLNAIARKRNKIKENEANLSGEHVREGL 298

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             ++SV + +PEF GQTKTKL + + +  V++ + +    YL  +P  A  +L+  I+  
Sbjct: 299 TAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFHPGIADSVLDKAIQAF 358

Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIA 461
           +     R  RE V RK+ +    LPGKLADCS    
Sbjct: 359 KAAEAARHARELVRRKSVLESSPLPGKLADCSSRDP 394


>gi|157683621|gb|ABV64542.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
          Length = 419

 Score =  276 bits (705), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 166/430 (38%), Positives = 248/430 (57%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL       +K GT + F P  + F +   F+        +  ++L+  V       ++
Sbjct: 61  APLAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEIPANRLRELSFLNSGVSIRQRDKRD 119

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +
Sbjct: 120 GKE-------DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWHD 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     +
Sbjct: 170 GFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLI 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+   
Sbjct: 230 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                RR +    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHIRTLL 419


>gi|148470236|gb|ABQ66065.1| gyrase b [uncultured bacterium]
          Length = 423

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 161/429 (37%), Positives = 239/429 (55%), Gaps = 14/429 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD STY++SGGLHGVG+S VNALS  + V V++   IF   FS+G P 
Sbjct: 1   EVIMTVLHAGGKFDKSTYKVSGGLHGVGVSCVNALSKNMVVEVSQNGKIFEMHFSKGKPT 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
             L    +  +K GT++TF PD  IF     +D   LL+  +  A+L+  +   +  ++E
Sbjct: 61  KLLTVTGET-DKHGTKVTFWPDDTIFTVTV-YDYDILLRRLRELAFLNKGLTIHFRDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR-GTVEWAIAWC 309
                       F + GG++++++   EN+  +  +       K+ +      E  + W 
Sbjct: 119 DKSD------VTFCYEGGVRSFVEYLNENKVPLFPKPIYIHGSKESSDGVVEFEVGMQWN 172

Query: 310 EENPEITS-YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISA 366
           +   E    Y N I T +GGTH +G   ALTR + +Y +    +++  +    DD+    
Sbjct: 173 DTYTENLHSYVNNISTRQGGTHVTGSSTALTRVLNQYIKSHNLQKSDKMAITGDDMREGL 232

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             ++SV +  P+F GQTK +L + +    V+  + +    +L +NP+ +  ++E  I  +
Sbjct: 233 TAVISVKVPNPQFEGQTKQRLGNSEVASIVQQIVGEELTIFLEENPVVSRMIVEKAILAA 292

Query: 427 EERLRRRKQREVN-RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
           + R   RK RE+  RKTA+   RLPGKL DC +      E++IVEGDSAGGSAK  R+R 
Sbjct: 293 QAREAARKARELTLRKTALDSARLPGKLTDCQERDPALCEIYIVEGDSAGGSAKTGRDRR 352

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDA 544
            QAVLP+RGKILNV  A  EKI  N ++  ++ A GC         E LRY K+IIMTDA
Sbjct: 353 FQAVLPIRGKILNVEKARLEKILQNTEVGAMIAAFGCGIGHDNFSLEKLRYHKIIIMTDA 412

Query: 545 DVDGAHIAS 553
           DVDG+HI +
Sbjct: 413 DVDGSHIRT 421


>gi|88824783|gb|ABD52437.1| gyrase B [Escherichia coli]
          Length = 419

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 166/429 (38%), Positives = 249/429 (58%), Gaps = 16/429 (3%)

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           +I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +
Sbjct: 2   VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQA 61

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
           PL    +     GT + F P  + F +   F+   L K  +  ++L+  V       ++ 
Sbjct: 62  PLAVTGETEK-TGTVVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDG 120

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
            E       + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W + 
Sbjct: 121 KE-------DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDG 170

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVG 368
               I  + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     + 
Sbjct: 171 FQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIA 230

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSE 427
           ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+    
Sbjct: 231 VVSVKVPDPKFSSQTKDKLVSSEVKSAVELQMNELLAEYLLENPTDAKIVVGKIIDAARA 290

Query: 428 ERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
               RR +    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQ
Sbjct: 291 REAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQ 350

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADV 546
           A+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADV
Sbjct: 351 AILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADV 410

Query: 547 DGAHIASLL 555
           DG+HI +LL
Sbjct: 411 DGSHIRTLL 419


>gi|38639928|ref|NP_943883.1| topoisomerase II large subunit [Aeromonas phage Aeh1]
 gi|33414617|gb|AAQ17660.1| topoisomerase II large subunit [Aeromonas phage Aeh1]
          Length = 613

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 143/658 (21%), Positives = 240/658 (36%), Gaps = 88/658 (13%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTDE-----------------KALHHLFSEVIDNAMDE 88
           +   ++L   E   +   MYIG T                     L  +  EVIDN++DE
Sbjct: 2   SQEFKVLSDKEHCLINTDMYIGSTSTETHDVLVDGKFVQIAYVPGLVKITDEVIDNSVDE 61

Query: 89  VIAG---YANLIEVSLDGNGFLTVVDNGRGIPVENH--PKFPNKSTLEIILTTLHAGGKF 143
            I     +AN IEV +  +  ++V DNGRG+P      P+           T   AG  F
Sbjct: 62  AIRTNFEHANQIEVVI-KDNQVSVKDNGRGLPQGMVVTPEGVEVPLPLAAWTRARAGSNF 120

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
                  + G +GVG ++ N  SD             + + +            K    +
Sbjct: 121 SAD--RKTIGKNGVGSALTNFFSDSFVGETGNGTNTVTVRCTNNADEVSYT--TKAGKFK 176

Query: 204 GTRITFRPDPKIFGDKA--GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           GT +TF PD   FG           +     + A     +   ++  K         +  
Sbjct: 177 GTNVTFVPDFTRFGVFQLDEDFEQVIQSRLLTLAVNFPPITFKYNGKK------VEGKFS 230

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
           +F    G                        +    +   V    A  EE     S+ N 
Sbjct: 231 KFAAQFG------------------------DVVSHNDDNVSLFFATSEEY-RQLSFVNG 265

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
           + T +GG H  G+  +L+  +     + +  +     +       +G+    +  P++ G
Sbjct: 266 VHTKQGGNHVYGVLDSLSDEL--IPMIKRQHKIEINKARIKECLLIGLFIRNLVAPKYDG 323

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK +L S  AQ        +     L +  ++  ++++ +I  +  +     +    + 
Sbjct: 324 QTKERLSSPWAQIR---DHMNLDYKALARKILKTPEVIDPIIASALAKKEAADKAAATKA 380

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
               K     K    +      T LF+ EGDSA G   + RN   Q   PLRGK+LNV +
Sbjct: 381 QKKAKKANVAKHVAAAGLGRLKTMLFLAEGDSAIGPFTRFRNEETQGSYPLRGKMLNVWN 440

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH-IASLLLTFFY 560
               ++  N++I DL+  L    RS+       Y  + IMTDAD DG   IA L + FFY
Sbjct: 441 LPDHEVLKNKEIADLLGILNVELRSKEAP---AYTDIAIMTDADQDGKGSIAMLAIAFFY 497

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           +      EQ  + ++  P +  T G K+ +++  +  +       K   GK      KGL
Sbjct: 498 KFWPHWFEQGRIHIVRTPEYISTNGKKTDWSYSRDEFRS------KKFDGKWTHRHIKGL 551

Query: 621 G----EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
           G    E    + K+   +     L +V I+        T + +  L G    +R +++
Sbjct: 552 GSLTVEGDDCEYKQCIENL---VLEQVVIDD------QTPELLEMLFGDDEHKRKQWL 600


>gi|23978284|dbj|BAC21125.1| DNA gyrase B subunit [Chroococcidiopsis sp. PCC 7431]
          Length = 396

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 139/396 (35%), Positives = 212/396 (53%), Gaps = 5/396 (1%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T  + LHHL  EV+DN++DE +AGY   IE+ L+ +G + VVD+GRGIP + HP+   KS
Sbjct: 1   TGPRGLHHLVYEVVDNSIDEALAGYCTHIEIDLNADGSVQVVDDGRGIPTDTHPQ-TGKS 59

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
            LE ++T LHAGGKF    Y++SGGLHGVGISVVNALS+ + VTV R   + +Q++ RG+
Sbjct: 60  ALETVMTVLHAGGKFGGGGYKVSGGLHGVGISVVNALSEWVEVTVWRDKKVHTQRYERGV 119

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
           P+  L+ K     K GT + F+PD +IF     FD   L    +  AYL+  V+  ++  
Sbjct: 120 PMGELQTKSFKEAKTGTGVRFKPDAEIFTVGTEFDYITLAGRLRELAYLNAGVRITFTDH 179

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +    K   P+ E + + GG++ Y+     ++  +  EI   + E+    +  V      
Sbjct: 180 RLELLKSQEPKVETYEYKGGIREYVSYINNDKQALHEEIIFVQGERNNV-QVEVALQWCT 238

Query: 309 CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISA 366
                 +  + N I T +GGTH  GL+  LTR +   A      +    ++  + +    
Sbjct: 239 DAYTDNLLGFANNIRTVDGGTHLEGLKTVLTRTLNAIARKRNKIKDNEPNLSGEHVREGL 298

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             ++SV + +PEF GQTKTKL + + +  V++ + +    YL   P  A  +L+  I+  
Sbjct: 299 TAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFRPSIADSILDKAIQAF 358

Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIA 461
           +     R  RE V RK+ +    LPGKLADCS    
Sbjct: 359 KAAEAARHARELVRRKSVLESSPLPGKLADCSSRDP 394


>gi|31071481|dbj|BAC76789.1| DNA gyrase B subunit [Hapalosiphon sp. IAM M-264]
          Length = 396

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 141/396 (35%), Positives = 213/396 (53%), Gaps = 5/396 (1%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T  + LHHL  EV+DN++DE +AGY   +EV L+ +G +TV D+GRGIP     K   KS
Sbjct: 1   TGPRGLHHLVYEVVDNSIDEALAGYCTHVEVDLNADGSVTVTDDGRGIPTGIVAK-TGKS 59

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
            LE +LT LHAGGKF    Y++SGGLHGVG+SVVNALS+ + VTV R   + +Q++ RGI
Sbjct: 60  GLETVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSEWVEVTVWRDQKVHTQRYERGI 119

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
           P++ L  K    N+ GT +TF+PD +IF     FD   L    +  AYL+  VK  ++  
Sbjct: 120 PVTELNAKPYKDNRTGTSVTFQPDSQIFTTGTEFDYTTLASRLRELAYLNAGVKITFTDH 179

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +    K   P+ E + + GG++ Y+     ++  +  E+   + E+    +  V      
Sbjct: 180 RLQLLKSDQPKVETYEYKGGIREYITYINADKQPLHEEVIYVQGERNNV-QVEVALQWCT 238

Query: 309 CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISA 366
                 +  + N I T +GGTH  GL+  LTR +   A      +    ++  + +    
Sbjct: 239 DAYTDNVLGFANNIRTVDGGTHLEGLKAVLTRTLNAIARKRNKIKDSEPNLSGEHVREGL 298

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
            G++SV + +PEF GQTKTKL + + +  V++ + +    YL  +P  A  +L+  I+  
Sbjct: 299 TGLISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGETLTEYLEFHPSVADAILDKAIQAF 358

Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIA 461
           +     R  RE V RK+ +    LPGKLADCS    
Sbjct: 359 KAAEAARHARELVRRKSVLESSPLPGKLADCSSRDP 394


>gi|88824761|gb|ABD52426.1| gyrase B [Salmonella enterica]
          Length = 419

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 166/427 (38%), Positives = 246/427 (57%), Gaps = 16/427 (3%)

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
            T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P +PL
Sbjct: 4   WTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPL 63

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
                  +K GT + F P  + F +   F+   L K  +  ++L+  V       ++  E
Sbjct: 64  AVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE 122

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
                  + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +   
Sbjct: 123 -------DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQ 172

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
             I  + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++
Sbjct: 173 ENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVV 232

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEER 429
           SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+      
Sbjct: 233 SVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARARE 292

Query: 430 LRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RR +    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+
Sbjct: 293 AARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAI 352

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDG 548
           LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG
Sbjct: 353 LPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDG 412

Query: 549 AHIASLL 555
           +HI +LL
Sbjct: 413 SHIRTLL 419


>gi|148762383|dbj|BAF63893.1| DNA topoisomerase IV subunit B [Halobacillus yeomjeoni]
          Length = 407

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 136/414 (32%), Positives = 209/414 (50%), Gaps = 19/414 (4%)

Query: 73  ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
            LHHL  E++DNA+DE +AG+   + V+L  +G ++V D  RG+P   H     K T E+
Sbjct: 6   GLHHLVHEIVDNAVDEALAGFGQQMTVTLHKDGSVSVEDEARGMPTGMHK--TGKPTPEV 63

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
           ILT LHAGGKF    Y+ SGGLHGVG SVVNALS+ L V + R    + Q+F  G     
Sbjct: 64  ILTVLHAGGKFGQGGYKSSGGLHGVGASVVNALSEWLEVKICRDGERYYQRFENGGVPVT 123

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
             + +    K GT I F+PDP IF     F+   L +  +  A+L    +     +++  
Sbjct: 124 SLEHKGATRKSGTTIRFKPDPTIFSV-TKFNFETLSERLREAAFLLKGFRINLVDERKER 182

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
            +      E + +  G+++++    E +  +   +    +  +       ++     E  
Sbjct: 183 VE------EVYQYDDGIESFVAYLNEEKDTLHPVVSFEGSHSEIEADIAFQFNDGLAE-- 234

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE--LTQNKRAISIISDDLMISAVGIL 370
             I S+ N + T +GGTHESG + A+TR    YA       ++  ++  +D+      I+
Sbjct: 235 -SILSFVNNVRTKDGGTHESGAKTAITRVFNDYARRAQMLKEKDKNLEGNDIREGFTAII 293

Query: 371 SVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           SV I E   +F GQTK+KL + +A+  V+  + +   ++L +NP  A+ L++  I+  E 
Sbjct: 294 SVRIPEELLQFEGQTKSKLGTSEARSAVDAVVAEQLSYFLEENPDVASMLIKKAIKAKEA 353

Query: 429 RLRRRKQREVNRKTAIRK---LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           R   RK RE  R    +K     L GKL           EL++VEGDSAGGSAK
Sbjct: 354 REAARKAREDARSGKKKKRKDTLLSGKLTPAQSRNPQKNELYLVEGDSAGGSAK 407


>gi|149787391|gb|ABR29844.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
          Length = 416

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 166/427 (38%), Positives = 247/427 (57%), Gaps = 16/427 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL       +K GT + F P  + F +   F+   L K  +  ++L+  V       ++
Sbjct: 61  APLAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD 119

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +
Sbjct: 120 GKE-------DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     +
Sbjct: 170 GFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLI 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+   
Sbjct: 230 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                RR +    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDAD 409

Query: 546 VDGAHIA 552
           VDG+HI 
Sbjct: 410 VDGSHIR 416


>gi|23978217|dbj|BAC21107.1| DNA gyrase B subunit [Calothrix brevissima]
          Length = 398

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 145/398 (36%), Positives = 214/398 (53%), Gaps = 7/398 (1%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T  K LHHL  EV+DN++DE +AGY   +EV L+ +G +TV D+GRGIP + HPK   KS
Sbjct: 1   TGPKGLHHLVYEVVDNSIDEALAGYCTHVEVDLNADGSVTVTDDGRGIPTDIHPK-TGKS 59

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
            LE +LT LHAGGKF    Y++SGGLHGVGISVVNALS+ + VTV R   +  Q++ RGI
Sbjct: 60  ALETVLTILHAGGKFGGGGYKVSGGLHGVGISVVNALSEFVEVTVWRDKKVHLQRYERGI 119

Query: 189 PLS--PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           P+S   ++  ++   + GT +TF PD +IF     FD   L    +  AYL+  VK  ++
Sbjct: 120 PVSDLQVKPNKEKEARTGTSVTFLPDTQIFTTGTEFDYITLAGRLRELAYLNAGVKITFT 179

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
            ++    K   P+ E + + GG+K Y+      +  +  EI   + E+    +  V    
Sbjct: 180 DNRLELLKSDTPKIETYEYRGGIKEYIAYMNREKQPLHEEIIYVQGERSNV-QVEVALQW 238

Query: 307 AWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMI 364
                   +  + N I T +GGTH  GL+  LTR +   A      +    ++  + +  
Sbjct: 239 CTDAYTDNVLGFANNIRTVDGGTHLEGLKAVLTRTLNAIARKRNKIKENEPNLSGEHVRE 298

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
               I+SV + +PEF GQTKTKL + + +  V++ + +    YL  +P  A  +L+  I+
Sbjct: 299 GLTAIISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFHPSVADAVLDKAIQ 358

Query: 425 RSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIA 461
             +     R  RE V RK+ +    LPGKLADCS    
Sbjct: 359 AFKAAEAARHARELVRRKSVLESSPLPGKLADCSTRDP 396


>gi|310781033|gb|ADP23992.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 392

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 152/405 (37%), Positives = 226/405 (55%), Gaps = 17/405 (4%)

Query: 79  SEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLH 138
            EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+ LT LH
Sbjct: 1   YEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVALTMLH 59

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + LE   +
Sbjct: 60  AGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDLEVIGE 119

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
                 T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  E     
Sbjct: 120 TEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGKE----- 172

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
             E F + GG+ ++++    N+ ++  E    + +        VE  + + +     I S
Sbjct: 173 --EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNDSYNENIFS 227

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I T EGGTH  G + ALT+ I  YA           ++  +D+      I+SV ++
Sbjct: 228 FANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLK 287

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
            P+F GQTKTKL + + +  VEN + D    +L +NP  A  ++E   + +  R   RK 
Sbjct: 288 NPQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARAREAARKA 347

Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           RE   RK+A+    LPGKLADCS+      ELF+VEGDSAGGSAK
Sbjct: 348 RELTRRKSALENTTLPGKLADCSEKDPSKCELFLVEGDSAGGSAK 392


>gi|23978263|dbj|BAC21120.1| DNA gyrase B subunit [Fischerella muscicola]
          Length = 396

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 140/396 (35%), Positives = 213/396 (53%), Gaps = 5/396 (1%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T  + LHHL  EV+DN++DE +AGY   +EV L+ +G +TV D+GRGIP     K   KS
Sbjct: 1   TGPRGLHHLVYEVVDNSIDEALAGYCTHVEVDLNADGSVTVTDDGRGIPTGIVAK-TGKS 59

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
            LE +LT LHAGGKF    Y++SGGLHGVG+SVVNALS+ + VTV R   + +Q++ RGI
Sbjct: 60  GLETVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSEWVEVTVWRDKNVHTQRYERGI 119

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
           P++ L  K    N+ GT ++F+PD +IF     FD   L    +  AYL+  VK  ++  
Sbjct: 120 PVTELNVKPYKDNRTGTSVSFQPDSQIFTTGTEFDYTTLASRLRELAYLNAGVKITFTDH 179

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +    K   P+ E + + GG++ Y+     ++  +  E+   + E+    +  V      
Sbjct: 180 RLELLKSDQPKVETYEYKGGIREYITYINADKQPLHEEVIYVQGERNNV-QVEVALQWCT 238

Query: 309 CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISA 366
                 +  + N I T +GGTH  GL+  LTR +   A      +    ++  + +    
Sbjct: 239 DAYTDNVLGFANNIRTVDGGTHLEGLKAVLTRTLNAIARKRNKIKDNEPNLSGEHVREGL 298

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
            G++SV + +PEF GQTKTKL + + +  V++ + +    YL  +P  A  +L+  I+  
Sbjct: 299 TGVISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGETLTEYLEFHPSVADAVLDKAIQAF 358

Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIA 461
           +     R  RE V RK+ +    LPGKLADCS    
Sbjct: 359 KAAEAARHARELVRRKSVLESSPLPGKLADCSSRDP 394


>gi|68138887|gb|AAY86031.1| GyrB [Burkholderia vietnamiensis]
          Length = 603

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 152/427 (35%), Positives = 233/427 (54%), Gaps = 17/427 (3%)

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G+ +SP+       N RGT + F  DP IFG    +    L K  +  ++L+  V+   +
Sbjct: 15  GVEVSPMLVTGDTEN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLT 72

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   E         F F GG+K +++   + ++ +   +F    EK G     VE A+
Sbjct: 73  DLRSGKEDD-------FAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGV---GVEVAM 122

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W +     +  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+ 
Sbjct: 123 QWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMR 182

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                +LSV + EP+F+ QTK KLVS + +  VE  +    + +L++ P +A  +   ++
Sbjct: 183 EGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPTDAKIICGKIV 242

Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           E +  R   RK RE+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R
Sbjct: 243 EAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGR 302

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIM 541
           +R  QA+LPLRGK+LNV  A  +K+ +++QI+ LV ALGC         + LRY ++IIM
Sbjct: 303 DRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIM 362

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           TDADVDGAHI +LLLTFFY++M +++E+ ++++  PPL++I  G    Y  D+      +
Sbjct: 363 TDADVDGAHIRTLLLTFFYRQMPEMVERGYVYIAQPPLYKIKAGKDERYLKDDAELNAHM 422

Query: 602 EEFKKHG 608
                 G
Sbjct: 423 LRLALQG 429


>gi|68138588|gb|AAY85988.1| GyrB [Burkholderia multivorans]
 gi|68138597|gb|AAY85989.1| GyrB [Burkholderia multivorans]
 gi|68138612|gb|AAY85990.1| GyrB [Burkholderia multivorans]
 gi|68138617|gb|AAY85991.1| GyrB [Burkholderia multivorans]
 gi|68138623|gb|AAY85992.1| GyrB [Burkholderia multivorans]
          Length = 603

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 154/427 (36%), Positives = 234/427 (54%), Gaps = 17/427 (3%)

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  +SP++      N RGT + F  DP IFG    +    L K  +  ++L+  V+   +
Sbjct: 15  GEEVSPMQVIGDTEN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLT 72

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   E         F F GG+K +++   + +S +   IF    EK G     VE A+
Sbjct: 73  DLRSGKEDD-------FAFAGGVKGFVEYINKTKSNLHPTIFHVIGEKDGV---GVEVAM 122

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W +     +  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+ 
Sbjct: 123 QWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETTGDDMR 182

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                +LSV + EP+F+ QTK KLVS + +  VE  +    + +L++ P +A  +   ++
Sbjct: 183 EGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIV 242

Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           E +  R   RK RE+ R+   +  + LPGKLADC +     +E++IVEGDSAGGSAKQ R
Sbjct: 243 EAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGR 302

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIM 541
           +R  QA+LPLRGK+LNV  A  +K+ +++QI+ LV ALGC         + LRY ++IIM
Sbjct: 303 DRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIM 362

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           TDADVDGAHI +LLLTFFY++M ++IE+ ++++  PPL+++  G    Y  D+      +
Sbjct: 363 TDADVDGAHIRTLLLTFFYRQMPEMIERGYVYIAQPPLYKVKAGKDERYLKDDAELNAHM 422

Query: 602 EEFKKHG 608
                 G
Sbjct: 423 LRLALQG 429


>gi|31071477|dbj|BAC76787.1| DNA gyrase B subunit [Fischerella major NIES-592]
          Length = 396

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 141/396 (35%), Positives = 211/396 (53%), Gaps = 5/396 (1%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T  + LHHL  EV+DN++DE +AGY   +EV L+ +G +TV D+GRGIP     K   KS
Sbjct: 1   TGPRGLHHLVYEVVDNSIDEALAGYCTHVEVDLNADGSVTVTDDGRGIPTGIVAK-TGKS 59

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
            LE +LT LHAGGKF    Y++SGGLHGVGISVVNALS+ + VTV R   + +Q++ RGI
Sbjct: 60  GLETVLTVLHAGGKFGGGGYKVSGGLHGVGISVVNALSEWVEVTVWRDKKVHTQRYERGI 119

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
           P++ L  K    ++ GT ++F PD +IF     FD   L    +  AYL+  VK  ++  
Sbjct: 120 PVTELIVKPYKDHRTGTSVSFLPDSQIFTTGTEFDFTTLASRLRELAYLNAGVKITFTDH 179

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +    K   P+ E +   GG++ Y+     ++  +  E+   + E+    +  V      
Sbjct: 180 RLQLLKSDQPKVETYEHKGGIREYITYINADKQPLHEEVIYVQGERNNV-QVEVALQWCT 238

Query: 309 CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISA 366
                 I  + N I T +GGTH  GL+  LTR +   A      +    ++  + +    
Sbjct: 239 DAYTDNILGFANNIRTVDGGTHLEGLKAVLTRTLNAIARKRNKLKDSEPNLSGEHVREGL 298

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
            G++SV + +PEF GQTKTKL + + +  V++ + +    YL  +P  A  +L+  I+  
Sbjct: 299 TGVISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGETLTEYLEFHPSVADAILDKAIQAF 358

Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIA 461
           +     R  RE V RK+ +    LPGKLADCS    
Sbjct: 359 KAAEAARHARELVRRKSVLESSPLPGKLADCSSRDP 394


>gi|313625790|gb|EFR95410.1| DNA gyrase subunit B [Listeria innocua FSL J1-023]
          Length = 191

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 74/196 (37%), Positives = 113/196 (57%), Gaps = 6/196 (3%)

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549
           +P+RGKILNV  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGA
Sbjct: 1   MPIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGA 60

Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK 609
           HI +LLLT FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G 
Sbjct: 61  HIRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGD 118

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669
            K  I R+KGLGEM   QL +T M+   RTLL+V I   +    D  ++   LMG + + 
Sbjct: 119 TKYSIQRYKGLGEMNPEQLWDTTMNPEHRTLLQVNIKDAI----DADETFEMLMGDRVEP 174

Query: 670 RFKFIQERASFIDDVG 685
           R KFI++ A ++ ++ 
Sbjct: 175 RRKFIEDNAQYVKNLD 190


>gi|226326915|ref|ZP_03802433.1| hypothetical protein PROPEN_00775 [Proteus penneri ATCC 35198]
 gi|225204752|gb|EEG87106.1| hypothetical protein PROPEN_00775 [Proteus penneri ATCC 35198]
          Length = 430

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 152/418 (36%), Positives = 231/418 (55%), Gaps = 15/418 (3%)

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
                 K GT + F P  + F  +  F    L K  +  ++L+  V       ++  E  
Sbjct: 1   MIGDTEKSGTFVRFWPSLETFKGETEFQYDILAKRLRELSFLNSGVSIRLIDKRDNRE-- 58

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PE 314
                + F++ GG+K +++    N++ I   +F   TEK G     VE A+ W +     
Sbjct: 59  -----DHFHYEGGIKAFVEYLSRNKTPIHQNVFYFSTEKDGI---GVEVAMLWNDGFQEN 110

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSV 372
           +  + N I   +GGTH  G R A+TR +  Y +      K  IS   DD     + ++SV
Sbjct: 111 VYCFTNNIPQRDGGTHLVGFRTAMTRTLNNYMDKEGFNKKSKISATGDDAREGLIAVISV 170

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
            + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   
Sbjct: 171 KVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKIVVGKIIDAARAREAA 230

Query: 433 RKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           RK R    RK A+    LPGKLADCS+     +EL++VEGDSAGGSAKQ RNR  QA+LP
Sbjct: 231 RKAREMTRRKGALDLGGLPGKLADCSERDPAFSELYLVEGDSAGGSAKQGRNRKTQAILP 290

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAH 550
           L+GKILNV  A  +K+  +Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+H
Sbjct: 291 LKGKILNVEKARFDKMLASQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSH 350

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           I +LLLTFFY++M ++IE+ H+F+  PPL+++ +G +  Y  D++   + L      G
Sbjct: 351 IRTLLLTFFYRQMPEIIERGHIFIAQPPLYKVKKGKQEQYIKDDDAMDEYLMSIALDG 408


>gi|31071475|dbj|BAC76786.1| DNA gyrase B subunit [Nostoc entophytum]
          Length = 396

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 140/396 (35%), Positives = 211/396 (53%), Gaps = 5/396 (1%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T  + LHHL  EV+DN++DE +AGY   IEV ++ +G +TV D+GRGIP + H +   KS
Sbjct: 1   TGPRGLHHLVYEVVDNSIDEALAGYCTHIEVDINADGSVTVTDDGRGIPTDTHSR-TGKS 59

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
            LE ++T LHAGGKF    Y++SGGLHGVGISVVNALS+ + VTV R   +  Q++ RG 
Sbjct: 60  ALETVMTVLHAGGKFGGGGYKVSGGLHGVGISVVNALSEVVEVTVWRDKKVHVQRYERGT 119

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
           P++ L+ K     + GT +TF+PD +IF     FD   L    +  AYL+  VK  ++  
Sbjct: 120 PVTDLQVKAYKEARTGTSVTFKPDIQIFTTGIEFDYITLSGRLRELAYLNAGVKITFTDH 179

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +    K   P+ E + + GG+K Y+      +  +  EI   + E+    +  V      
Sbjct: 180 RLELLKSDTPKVESYEYKGGIKEYIAYMNREKRPLHEEIIYVQGERNNV-QVEVSLQWCT 238

Query: 309 CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISA 366
                 +  + N I T +GGTH  GL+  LTR +   A      +    ++  + +    
Sbjct: 239 DAYTDNVLGFANNIRTVDGGTHLEGLKAVLTRTLNAIARKRNKIKENEANLSGEHVREGL 298

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             ++SV + +PEF GQTKTKL + + +  V++ + +    YL  +P  A  +L+  I+  
Sbjct: 299 TAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLGFHPGVADAILDKAIQAF 358

Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIA 461
           +     R  RE V RK+ +    LPGKLADCS    
Sbjct: 359 KAAEAARHARELVRRKSVLESSPLPGKLADCSSRDP 394


>gi|315940101|gb|ADU56229.1| DNA gyrase subunit B [Nocardia rhamnosiphila]
          Length = 455

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 155/463 (33%), Positives = 243/463 (52%), Gaps = 36/463 (7%)

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
           +AG+A  +EV+L  +G + VVD+GRGIPV  H +     T+E+++T LHAGGKFD+ +Y 
Sbjct: 1   MAGHATRVEVTLLADGGVQVVDDGRGIPVAMHAQ--GIPTIEVVMTQLHAGGKFDSDSYA 58

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVGISVVNALS  L   V      +SQ +   +P      + +     GT I F
Sbjct: 59  VSGGLHGVGISVVNALSSRLEAEVDTDGYHWSQTYKDAVPGQL--VQGEPTKTTGTTIRF 116

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK------------------EI 251
             DP +F     ++   + +  Q  A+L+  +    + ++                  + 
Sbjct: 117 WADPAVFET-TTYNFETVSRRLQEMAFLNKGLTIVLTDERVSDTEITDEVVSDTAEAPKH 175

Query: 252 AEKYGIPEKEE------FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
            +    P  E       +++PGGL+ +++     +  I + + +   +  G     +E A
Sbjct: 176 DDNGEKPAAEPKVKTRTYHYPGGLEDFVRHINRTKQPIHNSVVSFNGKGPGH---ELEIA 232

Query: 306 IAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDL 362
           + W       + ++ NTI T EGGTHE G R ALT  + +YA+  +  +    ++  DD+
Sbjct: 233 MQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNRYAKEKKLLKEKDGNLTGDDI 292

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
                 I+SV + EP+F GQTKTKL + + +  V+ +  +   H+   NP +A  ++   
Sbjct: 293 REGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRSCNEHLAHWFEANPADAKTIVNKA 352

Query: 423 IERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
           +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  
Sbjct: 353 VSSAQARVAARKARELVRRKSATDIGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSG 412

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           R+   QA+LPLRGKI+NV  A  +K+  N ++  ++ A G   
Sbjct: 413 RDSMYQAILPLRGKIINVEKARIDKVLKNAEVQSIITAFGTGI 455


>gi|209863986|gb|ACI88910.1| GyrB [Acidithiobacillus thiooxidans]
          Length = 418

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 164/430 (38%), Positives = 253/430 (58%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS  L + + R   +++Q ++ G PL
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSISLQLRIYRDGFVWTQSYADGAPL 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+ +  +   + GT I F+P P++F D   F    L K  +  A+L+  V      ++ 
Sbjct: 61  APIAR-GEASTRHGTIIRFKPSPEVFAD-TQFHFEILAKRLRELAFLNSGVHITLLDERV 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       E F++ GG++ +++    +++ I   + +   E+ G     VE A+ W E
Sbjct: 119 NRE-------EIFHYHGGIRAFVEHLNRSKTAIHPHVISLAGERDGI---VVEAALQWNE 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  Y N I  ++GGTH +G R ALTR + +Y E      K  +S+  DD      
Sbjct: 169 GYNETVLCYTNNIPQNDGGTHLAGFRAALTRTLNQYMEREGTLAKAKVSVTGDDAREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE+++ +    +L ++P EA  +   +++ + 
Sbjct: 229 AVLSVKVPDPKFSSQTKDKLVSSEVKPVVESSMAEALTIFLDEHPKEAQAIAAKIVDAAR 288

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK RE   RK A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R +
Sbjct: 289 AREADRKARELTRRKGALDIANLPGKLADCQEKDPSLCEIYLVEGDSAGGSAKQGRDRRH 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDAD 545
           QA+LPL+GK+LNV  A  +K+ ++ +I  L+ ALG     +      LRY +VIIMTDAD
Sbjct: 349 QAILPLKGKLLNVERARFDKMLSSDEIGTLITALGTGIGKEDFNLAKLRYHRVIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|23978247|dbj|BAC21116.1| DNA gyrase B subunit [Stanieria cyanosphaera str. PCC 7437]
          Length = 393

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 142/398 (35%), Positives = 213/398 (53%), Gaps = 12/398 (3%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T  + LHHL  EV+DN++DE +AGY   IE+ L+ +G + V D+GRGIP   HPK   KS
Sbjct: 1   TGPRGLHHLVYEVVDNSIDEALAGYCTHIEIELNADGSVRVTDDGRGIPTGIHPK-TGKS 59

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
            LE ++T LHAGGKF    Y++SGGLHGVG+SVVNALS+ + VTV R   I +Q++ RGI
Sbjct: 60  ALETVMTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSEWVEVTVWRDQKIHTQRYERGI 119

Query: 189 PLSPLEKKEKVRNK--RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           P   L  +  ++     GT + F PD KIF +   F+   L    +  AYL+  VK  ++
Sbjct: 120 PSGDLVVQANIQEPQRTGTAVHFFPDTKIFTETIHFEYNVLAGRLRELAYLNAGVKITFT 179

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +          +E +++ GG+K Y+      +  +  +I   + EK G     V    
Sbjct: 180 DHRI-----EETRQEIYFYEGGIKEYVTYMTREKEPLHQDIIYVQGEKNGV-NIEVALQW 233

Query: 307 AWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMI 364
                N  +  + N I T +GGTH  GL+  LTR I   A      +    ++  +++  
Sbjct: 234 CVDAFNDNLLGFANNIRTIDGGTHLEGLKTVLTRTINDIARKRNKIKENESNLGGENVRE 293

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
              G++SV + +PEF GQTKTKL + + +  V++ + +  + YL  NP  A  ++E  ++
Sbjct: 294 GLTGVISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLNEYLEFNPQVADSVIEKAVQ 353

Query: 425 RSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIA 461
             +     R+ RE V RK+ +    LPGKLADCS    
Sbjct: 354 AFKAAEAARRARELVRRKSVLESSPLPGKLADCSSRDP 391


>gi|294661429|ref|YP_003579882.1| DNA topoisomerase II large subunit [Klebsiella phage KP15]
 gi|292660590|gb|ADE34838.1| DNA topoisomerase II large subunit [Klebsiella phage KP15]
          Length = 632

 Score =  273 bits (698), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 130/650 (20%), Positives = 239/650 (36%), Gaps = 87/650 (13%)

Query: 52  LEGLEPVRMRPGMYIGGTD-----------------EKALHHLFSEVIDNAMDEVIA--- 91
           +   + +R+RP MY+G  +                  + L  + +E++DN++DE I    
Sbjct: 31  MSDRDHIRLRPNMYVGSVNKEAHERFIMGQYRKVEYVEGLVKIINEILDNSIDEAIRTEF 90

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVE--NHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
            +AN I+V++D    + + DNGRGIP +    P            T   +G  FD+    
Sbjct: 91  KHANKIDVTIDH-NLVKISDNGRGIPQDDVKTPDGKIVPKPVAAWTMAKSGSNFDDKN-R 148

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           ++ G++GVG  + N  S       A      +   + G              ++GT + F
Sbjct: 149 VTMGMNGVGSFLTNCYSSIFIGETANGKRKVTINCTDGAQNIDYR--TSPSKEQGTTVKF 206

Query: 210 RPDPKIF--GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            PD  +F            +     + A     VK  ++ +              +    
Sbjct: 207 TPDFSMFGVTGIDEETKEVIKDRLMALAVAFPSVKFTYNGE------TLSNRFPLYASMY 260

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEG 327
           G KT +QT                          + + +A  E+  +  S+ N + T  G
Sbjct: 261 GDKTIVQTNNR-----------------------LSFILASTEDGFKQKSFVNGLDTKNG 297

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVF-IREPEFAGQTKTK 386
           G H   +   +     +   + + K +I I    +      ++ +     P F  QTK +
Sbjct: 298 GVHVECMIDGIYS---ELEPMIKKKHSIEIPKARVKECLTLVVFLHNFNAPAFDSQTKER 354

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L +   +    N   +     + +  ++  +++  +IE +  R +  +   + +     K
Sbjct: 355 LANTAGEF---NNHANLNYKKIAKMIMDTPEIITPIIESALIRKQAAEAAAITKAKKKAK 411

Query: 447 LRLPGKLADCSQNIAHGTE--LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
                K    S     G E  LF+ EGDSA G   + RN   Q   PLRGK LN      
Sbjct: 412 KAKIAKHVPASGIDTPGIETTLFLTEGDSAVGQFIECRNEETQGAFPLRGKPLNTWGMSF 471

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
             I  N+++ +L+  L            + Y+ + IM DADVDG  I +LLL FF +   
Sbjct: 472 TDIIKNKELFELMAILNIHPGDT---SGMTYDNIGIMVDADVDGGDILTLLLAFFSR-WP 527

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
            L  +K +  I  P+     G +  + +  +      ++ K       ++   KGLG + 
Sbjct: 528 SLFAEKRIRYIRTPIVIAKVGREEKWFYSLDEFAPFRDKAK-------DVRYIKGLGSLR 580

Query: 625 ASQLKETAMDANKRTL-LRVEINKDLNSLKDTQDSINKLMGTKADERFKF 673
                        R L  +++    +    + ++ +    G ++D R  +
Sbjct: 581 KEDY--------DRVLGDQLKY-DVIVLDDEYKEVLELCFGDESDPRKDW 621


>gi|23978280|dbj|BAC21124.1| DNA gyrase B subunit [Leptolyngbya sp. PCC 7375]
          Length = 396

 Score =  273 bits (697), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 135/396 (34%), Positives = 211/396 (53%), Gaps = 5/396 (1%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T  + LHHL  EV+DN++DE +AGY   I + L+ +G +TV D+GRGIP + H +   KS
Sbjct: 1   TGPRGLHHLVYEVVDNSVDEALAGYCKTITIDLNADGSVTVTDDGRGIPTDVHAR-TGKS 59

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
            LE ++T LHAGGKF    Y++SGGLHGVG+SVVNALS+ + VTV R      Q++ RG 
Sbjct: 60  ALETVMTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSEWVEVTVWRNKKEHLQRYERGE 119

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
               L  K    ++ GT ++F+PD  IF +   FD + L    +  AYL+  V   ++  
Sbjct: 120 AQGELSVKSGADSQTGTSVSFKPDQLIFTETVEFDYSTLAGRLRELAYLNAGVDITFTDH 179

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +    K   P+   +++ GG++ Y++   + +  I  +I     EK G  +       + 
Sbjct: 180 RLELLKADEPKINRYFYEGGIREYVEYINKEKQPIHPDIIYVTGEKNGV-QVEAALQWSV 238

Query: 309 CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISA 366
              +  +  + N I T +GGTH  GL+  LTR +  +A     ++    ++  +++    
Sbjct: 239 DAYSDNLMGFANNIRTVDGGTHLEGLKAVLTRTMNNFARKRNKRKDNEPNLAGENIREGL 298

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             ++SV + EPEF GQTKTKL + + +  V++ + +    YL  NP     +LE  I+  
Sbjct: 299 TAVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLIGETLSEYLDFNPNVVDSILEKAIQSF 358

Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIA 461
                 R+ R+ V RK+ +    LPGKLADCS    
Sbjct: 359 NAAEAARRARDLVRRKSVLESSTLPGKLADCSSRDP 394


>gi|23978214|dbj|BAC21106.1| DNA gyrase B subunit [Oscillatoria agardhii]
          Length = 396

 Score =  273 bits (697), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 140/397 (35%), Positives = 207/397 (52%), Gaps = 5/397 (1%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T  + LHHL  EV+DNA+DE +AGY   IE+  + NG +TV D+GRGIPV+ H K   KS
Sbjct: 1   TGPRGLHHLVYEVVDNAIDEALAGYCTHIEIDFNANGSVTVTDDGRGIPVDTHSK-TGKS 59

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
            LE +LT LHAGGKF    Y++SGGLHGVG+SVVNALS+ L VTV R    +SQ+F RG 
Sbjct: 60  ALETVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSEWLEVTVFRDRKEYSQRFERGT 119

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
           P + L  K     + GT ++F PD  IF     FD   +    +  AYL+  VK   +  
Sbjct: 120 PATELTSKPIKEARTGTSVSFLPDTSIFTTGIEFDCDTIASRLRELAYLNAGVKITLTDS 179

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +        P  E + + GG++ Y+     ++  +  +I     E+    +  V      
Sbjct: 180 RLELLNRENPRIETYCYEGGIREYIAYMNNDKQPLHEDIIYTCGERSNV-QIEVALQWCT 238

Query: 309 CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISA 366
              +  +  + N I T +GGTH  GL+  LTR +   A      +    ++  +++    
Sbjct: 239 DAYSDTVLGFANNIRTIDGGTHLEGLKTVLTRTLNAIARKRNKLKEGEANLGGENIREGL 298

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             ++S  + +PEF GQTKT+L + + +  V++ + +    YL  NP  A  ++E  I+  
Sbjct: 299 TAVISAKVPDPEFEGQTKTRLGNPEVRGIVDSLVGEALTEYLEFNPGIADAIIEKAIQAF 358

Query: 427 E-ERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAH 462
           +     RR +  V RK+ +    LPGKLADCS    H
Sbjct: 359 KAAEAARRARDLVRRKSVLESSPLPGKLADCSTRDPH 395


>gi|149787394|gb|ABR29845.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
          Length = 415

 Score =  273 bits (697), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 166/426 (38%), Positives = 247/426 (57%), Gaps = 16/426 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL       +K GT + F P  + F +   F+   L K  +  ++L+  V       ++
Sbjct: 61  APLAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD 119

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +
Sbjct: 120 GKE-------DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     +
Sbjct: 170 GFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLI 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+   
Sbjct: 230 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                RR +    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDAD 409

Query: 546 VDGAHI 551
           VDG+HI
Sbjct: 410 VDGSHI 415


>gi|304373561|ref|YP_003858306.1| gp39plus60 DNA topoisomerase II large subunit [Enterobacteria phage
           RB16]
 gi|299829517|gb|ADJ55310.1| gp39plus60 DNA topoisomerase II large subunit [Enterobacteria phage
           RB16]
          Length = 631

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 134/650 (20%), Positives = 244/650 (37%), Gaps = 87/650 (13%)

Query: 52  LEGLEPVRMRPGMYIGGTD-----------------EKALHHLFSEVIDNAMDEVIA--- 91
           L   + +R RP MY+G  +                  + L  + +E++DN++DE I    
Sbjct: 30  LSDRDHIRKRPNMYVGSVNREAHERFIQGKFRKVEYVEGLVKIINEILDNSIDEAIRTDF 89

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENH--PKFPNKSTLEIILTTLHAGGKFDNSTYE 149
            +AN IEV +D    +T+ DNGRGIP ++   P+           T   +G  F +    
Sbjct: 90  KFANKIEVKIDH-NLVTISDNGRGIPQDDVRTPEGKIVPKPVAAWTMAKSGSNF-DDENR 147

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           ++ G++GVG  + N  S       +      +   + G     ++ +     ++GT + F
Sbjct: 148 VTMGMNGVGSFLTNCYSSIFIGETSNGKRKVTINCTDG--AQNMDYRTSPTKEQGTTVKF 205

Query: 210 RPDPKIF--GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            PD  IF            +     + A     VK  ++ +          +   +    
Sbjct: 206 TPDFSIFGVDGIDEETKEVIKDRLMALAVAFPSVKFTYNNE------VLPNKFAMYGAMY 259

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEG 327
           G KT +QT  +                       + + +A  E+  +  S+ N + T  G
Sbjct: 260 GEKTIVQTNNK-----------------------ISFILASTEDGFKQKSFVNGLDTKNG 296

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVF-IREPEFAGQTKTK 386
           G H   +         +   + + K AI I    +      ++ +     P F  QTK K
Sbjct: 297 GVHVDCMIDG---IYTELEPMIKKKHAIEIPKARVKECLTLVVFLHNFNAPAFDSQTKEK 353

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L +   +    N         + +  ++ ++++  +IE +  R +  +   + +     K
Sbjct: 354 LTNTAGEF---NNHAGLNYKKIAKQIMDTSEIITPIIESALIRKQAAEAAAITKAKKKAK 410

Query: 447 LRLPGKLADCSQNIAHGTE--LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
                K    S     G E  LF+ EGDSA G   + RN   Q   PLRGK LN     +
Sbjct: 411 KAKVAKHVPASGIDTDGVETTLFLTEGDSAVGQFIECRNEETQGAFPLRGKPLNTWGMSN 470

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
             I  N+++ +L+  L           ++ Y+ + IM DADVDG  I +LL+ FF +   
Sbjct: 471 SDILKNKELFELMAILNLHPGDS---SEMTYDNIGIMVDADVDGGDILTLLIAFFSR-WP 526

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
           +L  +K +  I  P+     G +  + +  +      ++ K+           KGLG + 
Sbjct: 527 ELFAKKKIRYIRTPIIIAKVGREEKWFYSLDDFTPFRDKAKEA-------RYIKGLGSLR 579

Query: 625 ASQLKETAMDANKRTL-LRVEINKDLNSLKDTQDSINKLMGTKADERFKF 673
                        R L  +++    +    + +D +    G  +D R  +
Sbjct: 580 KEDY--------DRVLGDQLKY-DTIVLGDEYKDVLELCFGDDSDPRKDW 620


>gi|68138640|gb|AAY85995.1| GyrB [Burkholderia cenocepacia]
          Length = 619

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 162/457 (35%), Positives = 242/457 (52%), Gaps = 29/457 (6%)

Query: 169 LHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKVRNKRGTRITFRPDPKIF 216
           L +TV R       +F RG+             +SP+       N RGT + F  DP IF
Sbjct: 1   LRLTVRRDGKKRFMEFHRGVAQDRVIEVVDGVEVSPMLVTGDTEN-RGTEVHFMADPTIF 59

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
           G    +    L K  +  ++L+  V+   +  +   E         F F GG+K +++  
Sbjct: 60  GTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD-------FAFAGGVKGFVEFI 111

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            + +S +   +F    EK G     VE A+ W +     +  + N I   +GGTH +GLR
Sbjct: 112 NKTKSTLHPTVFFANGEKDGV---GVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTGLR 168

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            A+TR I KY    +   K  +    DD+      +LSV + EP+F+ QTK KLVS + +
Sbjct: 169 AAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSEVR 228

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGK 452
             VE  +    + +L++ PI+A  +   ++E +  R   RK RE+ R+   +  + LPGK
Sbjct: 229 APVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVGLPGK 288

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+LNV  A  +K+ +++Q
Sbjct: 289 LADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLSSEQ 348

Query: 513 IMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           I+ LV ALGC    +    E LRY ++IIMTDADVDGAHI +LLLTF Y++M D+IE+ +
Sbjct: 349 IVTLVTALGCGIGKEDYNLEKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQMPDMIERGY 408

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +++  PPL++I  G    Y  D+      +      G
Sbjct: 409 VYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQG 445


>gi|4835907|gb|AAD30293.1|AF139115_1 gyrase B subunit [Pseudoalteromonas piscicida]
          Length = 420

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 165/430 (38%), Positives = 253/430 (58%), Gaps = 15/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L +T+ R   +  QK++ G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLQLTIRRDGKVHQQKYTMGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    +     GT + F P  + F D   F    L K  +  ++L+  V    + ++E
Sbjct: 61  APLGVIGEA-ESTGTELRFWPSAETFSDTN-FHYDILAKRLRELSFLNSGVSIILNDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   +++ F + GG++ ++      ++ +   +F   TE+      +VE ++ W +
Sbjct: 119 ------ENKQDHFKYEGGIQAFVAYLNRKKTPVHQSVFHFSTERDD--GISVEVSMQWND 170

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R ALTR +  Y E      K   S   DD      
Sbjct: 171 GFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNTYMEKEGFNKKYKTSATGDDAREGLT 230

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            ++SV + +P+F+ QTK KLVS + +  VE  + +    +L++NP +A  ++  +++ + 
Sbjct: 231 AVVSVKVPDPKFSSQTKDKLVSSEVKGAVEQMMAEKLTEFLLENPGDAKTVVNKIVDAAR 290

Query: 428 ERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK RE+ R+   +    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR N
Sbjct: 291 AREAARKAREMTRRKGVMDLAGLPGKLADCQERDPALSELYIVEGDSAGGSAKQGRNRKN 350

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  E LRY ++IIMTDAD
Sbjct: 351 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPEKLRYHRIIIMTDAD 410

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 411 VDGSHIRTLL 420


>gi|23978233|dbj|BAC21112.1| DNA gyrase B subunit [Anabaenopsis circularis]
          Length = 398

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 138/398 (34%), Positives = 214/398 (53%), Gaps = 7/398 (1%)

Query: 69  TDEKALHHLFS--EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
           T  + LHHL    EV+DN++DE +AGY   IE+ ++ +G ++V D+GRGIP + H +   
Sbjct: 1   TGPRGLHHLVYVYEVVDNSVDEALAGYCTHIEIEINADGSVSVTDDGRGIPTDTHSR-TG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           KS LE ++T LHAGGKF    Y++SGGLHGVGISVVNALS+ + VTV R   + +Q++ R
Sbjct: 60  KSALETVMTVLHAGGKFGGGGYKVSGGLHGVGISVVNALSEVVEVTVWRDKKVHTQRYER 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G+P++ L  K     + GT +TF+PD +IF     FD   L    +  AYL+  VK  ++
Sbjct: 120 GVPVTELVAKPYKEARTGTSVTFKPDTQIFTTGIEFDYITLAGRLRELAYLNAGVKITFT 179

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
            ++    K   P+ E + + GG+K Y+     ++  +  EI   + E+    +  V    
Sbjct: 180 DNRLELIKSDTPKVETYEYKGGIKEYIAYMNRDKQPLHEEIIYVQGERSNV-QIEVALQW 238

Query: 307 AWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMI 364
                   +  + N I T +GGTH  GL+  LTR +   A      +    ++  + +  
Sbjct: 239 CTDAYTDNVLGFANNIRTVDGGTHLEGLKAVLTRTLNAIARKRNKIKENEPNLSGEHVRE 298

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
               ++SV + +PEF GQTKTKL + + +  V++ + +    YL  +P  A  +L+  I+
Sbjct: 299 GLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFHPGIADSILDKAIQ 358

Query: 425 RSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIA 461
             +     R  RE V RK+ +    LPGKLADCS    
Sbjct: 359 AFKAAEAARHARELVRRKSVLESSPLPGKLADCSSRDP 396


>gi|88824763|gb|ABD52427.1| gyrase B [Vibrio cholerae]
          Length = 420

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 165/430 (38%), Positives = 251/430 (58%), Gaps = 15/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I SQ +  G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    +   + GT + F P  + F +   F    L K  +  ++L+  V    + ++E
Sbjct: 61  APLAVVGET-ERTGTTVRFWPSAQTFTN-IEFHYDILAKRLRELSFLNSGVSIKLTDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             +K      + F + GG++ ++     N++ I  ++F    E++     +VE A+ W +
Sbjct: 119 EDKK------DHFMYEGGIQAFVTHLNRNKTPIHEKVFHFNQERED--GISVEVAMQWND 170

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R ALTR +  Y +      K   +   DD      
Sbjct: 171 GFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLT 230

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +L +NP EA  +   +I+   
Sbjct: 231 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAAR 290

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR N
Sbjct: 291 AREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKN 350

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDAD
Sbjct: 351 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDAD 410

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 411 VDGSHIRTLL 420


>gi|83853995|gb|ABC47935.1| gyrase B subunit [Vibrio cholerae O139]
          Length = 421

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 165/431 (38%), Positives = 252/431 (58%), Gaps = 15/431 (3%)

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
           +E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I SQ +  G+P
Sbjct: 1   IEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVP 60

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            +PL    +   + GT + F P  + F +   F    L K  +  ++L+  V    + ++
Sbjct: 61  QAPLAVVGET-ERTGTTVRFWPSAQTFTN-IEFHYDILAKRLRELSFLNSGVSIKLTDER 118

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
           E  +K      + F + GG++ ++     N++ I  ++F    E++     +VE A+ W 
Sbjct: 119 EEDKK------DHFMYEGGIQAFVTHLNRNKTPIHEKVFHFNQERED--GISVEVAMQWN 170

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISA 366
           +     I  + N I   +GGTH +G R ALTR +  Y +      K   +   DD     
Sbjct: 171 DGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGL 230

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-R 425
             ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +L +NP EA  +   +I+  
Sbjct: 231 TAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAA 290

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
                 R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR 
Sbjct: 291 RAREAARKAREMTRRKGALDLAGLPGKLADCREKDPALSELYIVEGDSAGGSAKQGRNRK 350

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDA
Sbjct: 351 NQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDA 410

Query: 545 DVDGAHIASLL 555
           DVDG+HI +LL
Sbjct: 411 DVDGSHIRTLL 421


>gi|83853997|gb|ABC47936.1| gyrase B subunit [Vibrio cholerae O1 biovar El Tor]
          Length = 421

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 164/431 (38%), Positives = 250/431 (58%), Gaps = 15/431 (3%)

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
           +E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G+P
Sbjct: 1   IEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHTQTYHHGVP 60

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            +PL        + GT + F P  + F +   F    L K  +  ++L+  V      ++
Sbjct: 61  QAPLAVVGDT-ERTGTTVRFWPSAQTFTN-IEFHYDILAKRLRELSFLNSGVSIKLIDER 118

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
           E  +K      + F + GG++ ++     N++ I  ++F    E++     +VE A+ W 
Sbjct: 119 EEDKK------DHFMYEGGIQAFVTHLNRNKTPIHEKVFHFNQERED--GISVEVAMQWN 170

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISA 366
           +     I  + N I   +GGTH +G R ALTR +  Y +      K   +   DD     
Sbjct: 171 DGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGL 230

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-R 425
             ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +L +NP EA  +   +I+  
Sbjct: 231 TAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAA 290

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
                 R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR 
Sbjct: 291 RAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRK 350

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDA
Sbjct: 351 NQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDA 410

Query: 545 DVDGAHIASLL 555
           DVDG+HI +LL
Sbjct: 411 DVDGSHIRTLL 421


>gi|209863973|gb|ACI88904.1| GyrB [Leptospirillum ferriphilum]
          Length = 418

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 161/428 (37%), Positives = 241/428 (56%), Gaps = 13/428 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFDN+ Y++SGGLHGVG+SVVNALS+ L++ + +   +  Q + +G P+
Sbjct: 1   EVIMTVLHAGGKFDNNLYKVSGGLHGVGVSVVNALSETLYLEIHQNGLVHRQTYHKGAPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    +   +RGT I F PD  I      F    L    +  A+L+  +   +  ++ 
Sbjct: 61  APLAVFGETA-QRGTIIRFWPDMTIMET-DQFSFETLAHRFREMAFLNPVLTIHFKDEET 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
           + E       E F+F GG+++++    EN+  +   +F  K  + G+ +  V +      
Sbjct: 119 LRE-------ETFHFDGGVQSFVSFLNENKKPLHDVLFFRKNLEDGS-QFEVAFQYQEST 170

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
           EN  +  + N I T EGGTH  G R A+T+ I ++    Q  +   +  +D+     G++
Sbjct: 171 ENETVLGFANNIHTREGGTHVRGFRTAITKTINRFIREKQLNKGEEVRGEDVREGLTGVI 230

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV I  P+F GQTK KL S      +E+ L +       ++P  A K+ E  +  ++ R 
Sbjct: 231 SVRIPSPQFEGQTKAKLGSSWVSGAMESFLSEALQEKFEEDPQTAKKIAEKAVLTAQARE 290

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK ++   RK  +    LPGKLADC ++     EL+IVEGDSAGGSAKQ R+R  QA+
Sbjct: 291 AARKAKDLAKRKNVLEGSNLPGKLADCQESDPAKCELYIVEGDSAGGSAKQGRDRRFQAI 350

Query: 490 LPLRGKILNVASAG-SEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVD 547
           LPL+GKILNV  +   EK   N ++  L+ A+GC    +   E+ LRY K+IIMTDADVD
Sbjct: 351 LPLKGKILNVEKSRGIEKFITNDEVRALITAVGCGLGDEEFSEKKLRYHKIIIMTDADVD 410

Query: 548 GAHIASLL 555
           G+HI +LL
Sbjct: 411 GSHIRTLL 418


>gi|68138715|gb|AAY86005.1| GyrB [Burkholderia cenocepacia]
          Length = 618

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 159/456 (34%), Positives = 241/456 (52%), Gaps = 29/456 (6%)

Query: 170 HVTVARQNTIFSQKFSRGIP------------LSPLEKKEKVRNKRGTRITFRPDPKIFG 217
            +TV R       +F RG+             +SP+       N RGT + F  DP IFG
Sbjct: 1   RLTVRRDGKKRFMEFHRGVAQDRVLEVVDGVEVSPMLVTGDTEN-RGTEVHFMADPTIFG 59

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               +    L K  +  ++L+  V+   +  +   E         F F GG+K +++   
Sbjct: 60  TV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD-------FAFAGGVKGFVEYIN 111

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           + ++ +   +F    EK G     VE A+ W +     +  + N I   +GGTH +GLR 
Sbjct: 112 KTKTNLHPTVFFANGEKDGV---GVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTGLRA 168

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           A+TR I KY    +   K  +    DD+      +LSV + EP+F+ QTK KLVS + + 
Sbjct: 169 AMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSEVRA 228

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKL 453
            VE  +    + +L++ PI+A  +   ++E +  R   RK RE+ R+   +  + LPGKL
Sbjct: 229 PVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVGLPGKL 288

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+LNV  A  +K+ +++QI
Sbjct: 289 ADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLSSEQI 348

Query: 514 MDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           + LV ALGC    +    + LRY ++IIMTDADVDGAHI +LLLTF Y++M D+IE+ ++
Sbjct: 349 VTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQMPDMIERGYV 408

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++  PPL++I  G    Y  D+      +      G
Sbjct: 409 YIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQG 444


>gi|66391456|ref|YP_238981.1| DNA-dependent ATPase [Enterobacteria phage RB43]
 gi|62288544|gb|AAX78527.1| gp60plus39 DNA topoisomerase subunit [Enterobacteria phage RB43]
          Length = 630

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 137/650 (21%), Positives = 244/650 (37%), Gaps = 87/650 (13%)

Query: 52  LEGLEPVRMRPGMYIGGTD-----------------EKALHHLFSEVIDNAMDEVIA--- 91
           L   + +R RP MY+G  +                  + L  + +E++DN++DE I    
Sbjct: 30  LSDRDHIRKRPNMYVGSVNREAHERFIMGKFRKVEYVEGLVKIINEILDNSIDEAIRTDF 89

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENH--PKFPNKSTLEIILTTLHAGGKFDNSTYE 149
            +AN IEV +D    +T+ DNGRGIP ++   P+           T   +G  F +    
Sbjct: 90  KFANRIEVKIDH-NLVTISDNGRGIPQDDVRTPEGKIVPKPVAAWTMAKSGSNF-DDENR 147

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           ++ G++GVG  + N  S       +      +   + G     ++ +     ++GT + F
Sbjct: 148 VTMGMNGVGSFLTNCYSSIFIGETSNGKRKVTINCTDG--AQNMDYRTSPTKEQGTTVKF 205

Query: 210 RPDPKIF--GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            PD  IF            +     + A     VK  ++ +          +   +    
Sbjct: 206 TPDFSIFGVDGIDEETKEVIKDRLMALAVAFPSVKFTYNGE------TLPNKFAMYGAMY 259

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEG 327
           G  T  QT  +                       + + +A  E+  +  S+ N + T  G
Sbjct: 260 GDSTITQTNNK-----------------------ISFILASTEDGFKQKSFVNGLDTKNG 296

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVF-IREPEFAGQTKTK 386
           G H   +         +   + + K AI I    +      ++ +     P F  QTK K
Sbjct: 297 GVHVDCMIDG---IYAELEPMIKKKHAIEIPKARVKECLTLVVFLHNFNAPAFDSQTKEK 353

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L +   +    N         + +  ++ ++++  +IE +  R +  +   + +     K
Sbjct: 354 LTNTAGEF---NNHAGLNYKKIAKQIMDTSEIITPIIESALIRKQAAEAAAITKAKKKAK 410

Query: 447 LRLPGKLADCSQNIAHGTE--LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
                K    S     G E  LF+ EGDSA G   + RN   Q   PLRGK LN      
Sbjct: 411 KAKIAKHVPASGIDTDGVETTLFLTEGDSAVGQFIECRNEETQGAFPLRGKPLNTWGMSF 470

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
             I  N+++ +L+  L           ++ Y+ + IM DADVDG  I +LL+ FF +   
Sbjct: 471 TDILKNKELFELMAILNLHPGDS---SEMAYDNIGIMVDADVDGGDILTLLIAFFSR-WP 526

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
           +L E+K +  I  P+     G    + +  +      ++ K       E+   KGLG + 
Sbjct: 527 ELFEKKKIRYIRTPIIIAKIGKDEKWFYSMDDFVPFRDKAK-------EVRYIKGLGSLR 579

Query: 625 ASQLKETAMDANKRTL-LRVEINKDLNSLKDTQDSINKLMGTKADERFKF 673
            S           R L  +++    +    D +D +    G ++D R  +
Sbjct: 580 KSDY--------DRVLGDQLKY-DTIVLGDDYKDVLELCFGEESDPRKDW 620


>gi|146318411|ref|YP_001198123.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Streptococcus suis 05ZYH33]
 gi|145689217|gb|ABP89723.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Streptococcus suis 05ZYH33]
          Length = 241

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 97/242 (40%), Positives = 149/242 (61%), Gaps = 12/242 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHH+  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGNGLHHMVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G L+V D GRG+PV  H     K T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLSVSDRGRGMPVGMH--ATGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VNALS  L V + R   ++ Q+F + G P++ LEK     ++K GT++TF PD  IF   
Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFEQGGKPVTTLEKIGTAPKSKTGTKVTFMPDDTIFST- 185

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    + +  +  A+L  +V    + ++         E+EE+++  G++ Y+    E+
Sbjct: 186 TDFKFNTIAERLKESAFLLKQVTMTLTDER-------TGEQEEYHYDNGVQDYVSYLNED 238

Query: 280 RS 281
           + 
Sbjct: 239 KK 240


>gi|311992510|ref|YP_004009378.1| gp60plus39 DNA topoisomerase subunit [Acinetobacter phage Ac42]
 gi|298684293|gb|ADI96254.1| gp60plus39 DNA topoisomerase subunit [Acinetobacter phage Ac42]
          Length = 608

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 140/656 (21%), Positives = 232/656 (35%), Gaps = 81/656 (12%)

Query: 47  SSIRILEGLEPVRMRPGMYIGGT-----------------DEKALHHLFSEVIDNAMDEV 89
             I +L   E    +P MYIG T                     L  + SE+IDN++DE 
Sbjct: 4   DKITMLTDREHALQKPAMYIGSTVIEPHERFVFGEYKTVEYVPGLIKIISELIDNSLDEA 63

Query: 90  IAG---YANLIEVSLDGNGFLTVVDNGRGIPVE--NHPKFPNKSTLEIILTTLHAGGKFD 144
           I     YAN I V + G   +T+ DNGRGIP +    P+           T   AG  F 
Sbjct: 64  IRTDFEYANKISVDITGT-SVTIKDNGRGIPQDNVITPEGITIPGPVAAWTRTKAGSNFG 122

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           N     + G +GVG S+ N  S +         T      S  +     +     R   G
Sbjct: 123 NDATRKTIGTNGVGSSLANIFSKKFTGHTCNGKTTIQVDCSENMLNVDWKTGVGTRK--G 180

Query: 205 TRITFRPDPKIF--GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
           T +T  PD + F   +    +   +    Q+ A +  ++K  ++                
Sbjct: 181 TTVTIEPDLERFGVTEIGKNEIDLIHDQLQTLAVIYPKIKISFNGTIL------------ 228

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
               G  K ++    E+  ++ S+              T   A+    +     S+ N +
Sbjct: 229 ---QGNFKKFVTQFEEDPIILESD--------------TFSLALGRSPDGFRHVSFANGV 271

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T  GG H   +   L+  +     + +  +     +       + +    +    F  Q
Sbjct: 272 HTKNGGNHIEVIFDELSSELMN--SIKRKYKIDITKARIKECVTMVLFVRDMVNMRFDSQ 329

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL--RRRKQREVNR 440
           TK +L S      V++ L       L +  ++   +L  +IE    R     +       
Sbjct: 330 TKERLTSP--MGEVKSHLNLD-VKKLARMFLKNETVLMPIIEAVLARKLAADKAAETKAN 386

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A +        A+   + +  T LF+ EGDSA G     RNR      PLRGK  N  
Sbjct: 387 KAAQKAKVAKHIKANLYGDQSANTTLFLTEGDSAIGYLLSTRNRDLHGGYPLRGKFKNTW 446

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
                +I  NQ+  D+    G     +   E+  Y+ + IMTDADVDG       L  F+
Sbjct: 447 GDAPAQIMKNQEAFDICAITGLTLGEKA--EETYYKNIAIMTDADVDGTGSIYPTLLAFF 504

Query: 561 QEMYDLIEQKHLFLISPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
               +L EQ  +  +  P++        K  + +  E          K    K ++   K
Sbjct: 505 SNWPELFEQGRIKFVKTPVWICENKSTKKQTWYYTSEEYD-----LNKSKHLKDKVRYIK 559

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
           GLG +  S+            ++   +   ++   + +D    L G   D+R +++
Sbjct: 560 GLGSLEESEY---------ERVINEPVMDVVSLPDNWKDQFEMLFGNDPDKRKEWM 606


>gi|148762381|dbj|BAF63892.1| DNA topoisomerase IV subunit B [Halobacillus trueperi]
          Length = 407

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 140/414 (33%), Positives = 212/414 (51%), Gaps = 19/414 (4%)

Query: 73  ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
            LHHL  E++DNA+DE ++G+   + V+L  +G ++V D  RG+P   H     K T E+
Sbjct: 6   GLHHLVHEIVDNAIDEALSGFGEKMTVTLHKDGSVSVQDEARGMPTGMHK--TGKPTPEV 63

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
           ILT LHAGGKF    Y+ SGGLHGVG SVVNALS+ L V + R    F Q+F  G     
Sbjct: 64  ILTVLHAGGKFGQGGYKSSGGLHGVGASVVNALSEWLEVHICRDGEKFYQRFENGGVPVT 123

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
             + +    K GT I F+PDP IF     F+   L +  +  A+L    +     +++  
Sbjct: 124 SLENKGATRKTGTTIRFKPDPSIF-SMTKFNFETLSERLREAAFLLKGFRIILVDERK-- 180

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
                  +EE+ +  GL ++++   E +  + S +    +          ++   + E  
Sbjct: 181 ----ETVREEYQYDDGLVSFVEYLNEEKDTLHSVVSFEGSHSGIEADFAFQFNDGFAE-- 234

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
             I S+ N + T +GGTHESG + A+TR    YA   Q    +  ++  +D+      ++
Sbjct: 235 -NILSFVNNVRTKDGGTHESGAKTAITRVFNDYARRAQLLKDKDKNLEGNDIREGFTAVI 293

Query: 371 SVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           SV I E   +F GQTK+KL + +A+  V+  + +   ++L +NP  A+ L++  I+  E 
Sbjct: 294 SVRIPEELLQFEGQTKSKLGTSEARSAVDGIVAEQLSYFLEENPDVASMLIKKAIKAKEA 353

Query: 429 RLRRRKQREVNRKTAIRK---LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           R   RK RE  R    +K     L GKL       A   EL++VEGDSAGGSAK
Sbjct: 354 REAARKAREDARSGKKKKRKDTLLSGKLTPAQSKNAKKNELYLVEGDSAGGSAK 407


>gi|119369932|gb|ABL67980.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 420

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 156/430 (36%), Positives = 251/430 (58%), Gaps = 15/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+  ++ Q++  G P+
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSTKLTLAIRREGELWEQEYHCGDPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+  K   +  RGT + F PDP++F     F  ARL K  +  AYL+  +    + ++ 
Sbjct: 61  APIAAKGPAKG-RGTTVHFWPDPEVFES-TEFSFARLEKRFRELAYLNDGLTILLNDERG 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             ++ G+     +++ GG+  ++    ++R  +   +   K ++ G     V+ AI W +
Sbjct: 119 DRKREGV-----YHYEGGVAAFVLDINKSREAVHPTVIRIKGDRDGVM---VDTAIQWND 170

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +    N I   +GGTH +G R A+TR +  Y E      K  ++I + D+     
Sbjct: 171 GYNESVFPSTNNIPQVDGGTHLTGFRSAMTRVLGGYMEREGIATKAKVTIDAADMREGMT 230

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE+ + + + H+ +++P +  +    ++ R +
Sbjct: 231 AVLSVKVPDPKFSSQTKDKLVSSEVRPIVESVIAEVWAHFWMKSPRKPKRFAPKLLRRPQ 290

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK R+   RK A+    LPGKLADC +      E+++VEGDSAGGSAK+ R+R  
Sbjct: 291 AREAARKARDLTRRKGALDIANLPGKLADCQEKDPALCEIYLVEGDSAGGSAKRGRDRKF 350

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +++  + +I  L+ ALG            LRY ++IIMTDAD
Sbjct: 351 QAILPLKGKILNVERARFDRMLESDEIGTLITALGTGIGQDEFNAGKLRYHRIIIMTDAD 410

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 411 VDGSHIRTLL 420


>gi|148470188|gb|ABQ66042.1| gyrase b [uncultured bacterium]
 gi|148470194|gb|ABQ66045.1| gyrase b [uncultured bacterium]
 gi|148971335|gb|ABR20205.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 421

 Score =  270 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 165/430 (38%), Positives = 250/430 (58%), Gaps = 14/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD   Y++SGGLHGVG SVVNALS+   V V R   I++ +F RGI  
Sbjct: 1   EVIMTVLHAGGKFDGGGYKVSGGLHGVGASVVNALSEWTSVEVCRDGKIYNMEFERGIKT 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
             ++   K R K GT++TF+PDP+IF +   FD  R++   +  AYL+  +      ++ 
Sbjct: 61  GEIKVIGK-RQKSGTKVTFKPDPQIFPEVV-FDYDRIVARCRELAYLNESLAFYLEDERS 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGK-TEKKGTHRGTVEWAIAWC 309
                   +K+EF +  G+  +++   E + +I S++   +  E+   +  +V+ A+ + 
Sbjct: 119 -------GKKDEFKYTKGIIQFVKQLNEGKDVIHSQVVYLERAEQGKENPMSVQVAVQYN 171

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISA 366
           +     + S+ N I T  GGTH SG + ALTR +  YA+     +        DDL    
Sbjct: 172 DGYAESLHSFANNINTPGGGTHLSGFKTALTRTLNFYAKSNNLIKDEKEMPNGDDLREGL 231

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             I+SV +  P+F GQTK KL + + +  V +A+ +    +L ++P +A ++++  I   
Sbjct: 232 SAIVSVKVPNPQFEGQTKDKLGNGEVEGFVSSAVNEALGIWLEEHPGDAKRIIQKGILAR 291

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
           + R   RK RE+ RK A+    LPGKL+DCS      TEL+IVEG SAGG+AK  R+R  
Sbjct: 292 QAREAARKARELTRKGALTSGGLPGKLSDCSSRDMESTELYIVEGQSAGGTAKAGRDRVF 351

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDAD 545
           QA+LP++GKILNV  A  +K+  +++I  +VQAL C   +       LRY K++IMTDAD
Sbjct: 352 QAILPIKGKILNVEKARVDKMLGHEEIRTIVQALACGIGANDMDMTKLRYGKLVIMTDAD 411

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 412 VDGSHIRTLL 421


>gi|148971287|gb|ABR20181.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  270 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 164/428 (38%), Positives = 241/428 (56%), Gaps = 13/428 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFDN+ Y++SGGLHGVG+SVVNALS+ L + + +   I  Q + +G P 
Sbjct: 1   EVIMTVLHAGGKFDNNLYKVSGGLHGVGVSVVNALSETLFLEIHQNGLIHRQTYHKGTPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    +   +RGT I F PD  I      F    L    +  A+L+  +      ++ 
Sbjct: 61  APLAVFGETT-QRGTIIRFWPDMTIMET-DQFSFDTLAHRFRELAFLNPVLTIHLKDEET 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
           + E       E F+F GG+++++    EN+  +   +F  KT + G+ +  V +      
Sbjct: 119 LRE-------ETFHFEGGVQSFVSFLNENKKTLHEVLFFRKTLEDGS-QFEVAFQYQEST 170

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
           EN  +  + N I T EGGTH  G R A+T+ I ++    Q  +   +  +D+     GI+
Sbjct: 171 ENETVLGFANNIHTREGGTHVRGFRTAITKTINRFIREKQLNKGEEVRGEDVREGLTGII 230

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV I  P+F GQTK KL S      +E+ L +       ++P+ A K+ E  +  ++ R 
Sbjct: 231 SVRIPGPQFEGQTKAKLGSSWVAGAMESFLSEALQEKFEEDPLTAKKIAEKAVLTAQARE 290

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK ++   RK  +    LPGKLADC ++    +EL+IVEGDSAGGSAKQ R+R  QA+
Sbjct: 291 AARKAKDLAKRKNVLEGSNLPGKLADCQESDPAKSELYIVEGDSAGGSAKQGRDRRFQAI 350

Query: 490 LPLRGKILNVASAG-SEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVD 547
           LPL+GKILNV  +   EK   N ++  L+ A+GC    +   E+ LRY K+IIMTDADVD
Sbjct: 351 LPLKGKILNVEKSRGIEKFITNDEVRALITAVGCGLGEEEFSEKKLRYHKIIIMTDADVD 410

Query: 548 GAHIASLL 555
           G+HI +LL
Sbjct: 411 GSHIRTLL 418


>gi|68138894|gb|AAY86032.1| GyrB [Burkholderia vietnamiensis]
          Length = 574

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 148/411 (36%), Positives = 226/411 (54%), Gaps = 16/411 (3%)

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
           RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E         
Sbjct: 1   RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD------- 52

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           F F GG+K +++   + ++ +   +F    EK G     VE A+ W +     +  + N 
Sbjct: 53  FAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGV---GVEVAMQWNDSYNENVLCFTNN 109

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + EP+F
Sbjct: 110 IPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKF 169

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN 439
           + QTK KLVS + +  VE  +    + +L++ P +A  +   ++E +  R   RK RE+ 
Sbjct: 170 SSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPTDAKIICGKIVEAARARDAARKAREMT 229

Query: 440 RKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
           R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+LN
Sbjct: 230 RRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLN 289

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLT 557
           V  A  +K+ +++QI+ LV ALGC         + LRY ++IIMTDADVDGAHI +LLLT
Sbjct: 290 VEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLT 349

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           FFY++M +++E+ ++++  PPL++I  G    Y  D+      +      G
Sbjct: 350 FFYRQMPEMVERGYVYIAQPPLYKIKAGKDERYLKDDAELNAHMLRLALQG 400


>gi|73810190|gb|AAZ86068.1| DNA gyrase subunit B [Burkholderia cenocepacia]
          Length = 618

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 160/456 (35%), Positives = 241/456 (52%), Gaps = 29/456 (6%)

Query: 170 HVTVARQNTIFSQKFSRGIP------------LSPLEKKEKVRNKRGTRITFRPDPKIFG 217
            +TV R       +F RG+             +SP+       N RGT + F  DP IFG
Sbjct: 1   RLTVRRDGKKRFMEFHRGVAQDRVIEVVDGVEVSPMLVTGDTEN-RGTEVHFMADPTIFG 59

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               +    L K  +  ++L+  V+   +  +   E         F F GG+K +++   
Sbjct: 60  TV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD-------FAFAGGVKGFVEFIN 111

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           + +S +   +F    EK G     VE A+ W +     +  + N I   +GGTH +GLR 
Sbjct: 112 KTKSTLHPTVFFANGEKDGV---GVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTGLRA 168

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           A+TR I KY    +   K  +    DD+      +LSV + EP+F+ QTK KLVS + + 
Sbjct: 169 AMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSEVRA 228

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKL 453
            VE  +    + +L++ PI+A  +   ++E +  R   RK RE+ R+   +  + LPGKL
Sbjct: 229 PVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVGLPGKL 288

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+LNV  A  +K+ +++QI
Sbjct: 289 ADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLSSEQI 348

Query: 514 MDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           + LV ALGC    +    + LRY ++IIMTDADVDGAHI +LLLTF Y++M D+IE+ ++
Sbjct: 349 VTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQMPDMIERGYV 408

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++  PPL++I  G    Y  D+      +      G
Sbjct: 409 YIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQG 444


>gi|70949679|ref|XP_744228.1| dna gyrase subunit b [Plasmodium chabaudi chabaudi]
 gi|56524094|emb|CAH87968.1| dna gyrase subunit b, putative [Plasmodium chabaudi chabaudi]
          Length = 846

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 169/680 (24%), Positives = 261/680 (38%), Gaps = 112/680 (16%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NYDA  I ILEGLE VR RPGMYIG TD K LH +  E++DNA+DE      N I+V +
Sbjct: 27  NNYDAKDIVILEGLEAVRKRPGMYIGNTDSKGLHQILFEIVDNAVDEYNNHECNQIKVII 86

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV---- 157
             +  +T+ DNGRGIP + H K   KS LE +LT LH+G KF +    +           
Sbjct: 87  HNDESVTIEDNGRGIPCDIHEK-TKKSALETVLTVLHSGAKFLDDDTNMVVEEEKGKQKK 145

Query: 158 --------GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK------- 202
                   G + V+  S     T          K      L   +    +          
Sbjct: 146 TKKDVQETGNANVSNNSKGTD-TSVDGTKENKDKNKTNESLQKYKYSSGLHGVGLSVSNA 204

Query: 203 --RGTRITFRPDPKIFGDKAG---------FDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
                ++    D KI+  +                + K      Y      T +  + + 
Sbjct: 205 LSTFMKVNVFRDNKIYNIELEKGKVVKELNVQDCPIKKRGTQIHY--KPDNTIFKTNIKH 262

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK---------------- 295
             ++      +  +     T+      N +  +++  +   E                  
Sbjct: 263 NSEFIKNRLHQLAYLNDKLTFYFYDERNSNKGNNDNVSENGENNSYNKLDNYDYEIIKHE 322

Query: 296 --------------------GTHRGTVEWAIAWCEENPEITSYCNTIL------TDEGGT 329
                                    ++         + ++    N          +   T
Sbjct: 323 GGLDEYMEKLTKNKTNLFKVNNKVISISCFQKNIHVDLKLKWVTNQYNENILSFVNNVNT 382

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGI------LSVFIREPEFAGQT 383
            + G  V   +     +     K+  SI +   +            LS+ +  PEF GQT
Sbjct: 383 IDGGTHVDAMKYAISRSINYNVKKNESIKNFVNIPGEYIREGLTAILSIKMNNPEFEGQT 442

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE--VNRK 441
           KTKL S   +  +E+ + +         P     +    ++  +     +  R+   ++ 
Sbjct: 443 KTKLGSYYLKPILESIIFEKLSEVFDFEPNLLNTIYLKALQAKKSDEEAKAARDLIRSKN 502

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
                  LPGKL DC  +     E+FIVEGDSA GSAKQARNR  QA+LPL+GKILNV  
Sbjct: 503 NQYYSTILPGKLVDCISDDISKNEIFIVEGDSAAGSAKQARNREIQAILPLKGKILNVEK 562

Query: 502 -AGSEKIRNNQQIMDLVQALGCRTRS----------------------QYREEDLRYEKV 538
              ++KI  N ++  L+ A+G                            + +  LRY K+
Sbjct: 563 IKNNKKIFENVELKSLITAIGLNVNYDNNKTGKSNTNKRNDNKDIKKNNFIDNSLRYGKI 622

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQ 598
           IIMTDADVDG HI  LLLTF Y+   ++IE  ++++  PPL+++T         D   K 
Sbjct: 623 IIMTDADVDGEHICILLLTFLYRFQKEIIENGNVYVACPPLYKVTYNK----FFDNNIKD 678

Query: 599 KILEEFKKHGK-GKIEISRF 617
           +++ +F    K  K  I  +
Sbjct: 679 RVISKFNVTTKASKYIIHTY 698



 Score =  100 bits (248), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 4/76 (5%)

Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661
            +       K EI RFKGLGEM+A QL  T MD   R L+RV ++  +       + IN 
Sbjct: 771 NDMPFSSSKKYEIQRFKGLGEMMADQLWSTTMDPQVRKLIRVTVSDAIK----ANNLINS 826

Query: 662 LMGTKADERFKFIQER 677
           LMG  +  R  FI + 
Sbjct: 827 LMGEDSKSRKDFIIKN 842


>gi|148971347|gb|ABR20211.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 166/430 (38%), Positives = 248/430 (57%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALSD L +T+ R   I  Q +  G P+
Sbjct: 1   EVIMTVLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDSLELTIRRDGKIHYQMYRLGNPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            PL       ++ GT + F P PKIF +   F    L +  +  ++L+  V+     D++
Sbjct: 61  EPLTVIG-TTDETGTDVHFTPSPKIFTNTV-FHYDLLARRLRELSFLNSGVRIVLRDDRD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
           + E       + F   GG+  +++    N++ +  ++     EK+G    +VE A+ W +
Sbjct: 119 LKE-------DVFENQGGIAAFVRHLNRNKTPLHEKVIYISAEKEGV---SVELAMQWND 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                   Y N I   +GGTH +GLR A+TR + ++ E      K  IS   DD      
Sbjct: 169 SYQENTFCYTNNIPQRDGGTHLAGLRAAMTRTLNQHIENLALAKKDKISPTGDDAREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE+ + +    +L +NP +A  +   +I+ + 
Sbjct: 229 AVLSVKVPDPKFSSQTKEKLVSSEVKGIVESIVNERLLDFLQENPSDARVIASKIIDAAR 288

Query: 428 ERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK R    RK A+    LPGKLADC +      EL++VEGDSAGGSAKQAR+R  
Sbjct: 289 AREAARKARGMTRRKGALDIAGLPGKLADCQERDPSLCELYLVEGDSAGGSAKQARDRRF 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++ ++  L+ ALG    +  +  + LRY ++IIMTDAD
Sbjct: 349 QAILPLKGKILNVERARFDKMLSSAEVGTLITALGTGIGKDDFDIKKLRYHRIIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|167756990|ref|ZP_02429117.1| hypothetical protein CLORAM_02539 [Clostridium ramosum DSM 1402]
 gi|167703165|gb|EDS17744.1| hypothetical protein CLORAM_02539 [Clostridium ramosum DSM 1402]
          Length = 266

 Score =  270 bits (690), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 96/233 (41%), Positives = 139/233 (59%), Gaps = 12/233 (5%)

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLA          EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N   A    I  N+
Sbjct: 33  KLAPAQSKDKKRKELYLVEGDSAGGSAKQGRDRKYQAILPLRGKVVNTEKAAMADILKNE 92

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + + E+D  Y KVIIMTDAD DGAHI  LLLTFFY+ M DLI    
Sbjct: 93  EIATIINTIGAGVGADFNEKDSNYNKVIIMTDADTDGAHIQILLLTFFYRYMRDLITAGK 152

Query: 572 LFLISPPLFRITQ--GTKS--VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +++  PPL+++++  G K   VYA +E+  ++  ++  +       + R+KGLGEM ASQ
Sbjct: 153 VYIALPPLYKVSKKSGKKEDIVYAWEEDELEEAKKKIGR----GYNVQRYKGLGEMNASQ 208

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           L ET M+   RTL++V I          +  ++ LMG K + R ++I++   F
Sbjct: 209 LWETTMNPETRTLIQVSIED----AAIVERRVSVLMGDKVEPRREWIEQNVQF 257


>gi|31071483|dbj|BAC76790.1| DNA gyrase B subunit [Hapalosiphon delicatulus]
          Length = 396

 Score =  270 bits (690), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 140/396 (35%), Positives = 211/396 (53%), Gaps = 5/396 (1%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T  + LHHL  EV+DN++D  +AGY   +EV L+ +G +TV D+GRGIP     K   KS
Sbjct: 1   TGPRGLHHLVYEVVDNSIDXALAGYCTHVEVDLNADGSVTVTDDGRGIPTGIVAK-TGKS 59

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
            LE +LT LHAGGKF    YE+SGGLHGVG+SVVNALS+ +  TV R   + +Q++ RGI
Sbjct: 60  GLETVLTVLHAGGKFGGGGYEVSGGLHGVGVSVVNALSEWVEATVWRDQKVHTQRYERGI 119

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
           P++ L  K    N+ GT +TF+PD +IF     FD   L    +  AYL+  VK  ++  
Sbjct: 120 PVTELNAKPYKDNRTGTSVTFQPDSQIFTTGTEFDYTTLASRLRELAYLNAGVKITFTDH 179

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +    K   P+ E + + GG++ Y+     ++  +  E+   + E+    +  V      
Sbjct: 180 RLQLLKSDQPKVETYEYKGGIREYITYINADKQPLHEEVIYVQGERNNV-QVEVALQWCT 238

Query: 309 CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISA 366
                 +  + N I T +GGTH  GL+  LTR +   A      +    ++  + +    
Sbjct: 239 DAYTDNVLGFANNIRTVDGGTHLEGLKAVLTRTLNAIARKRNKIKDSEPNLSGEHVREGL 298

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
            G++SV + +PEF GQTKTKL + + +  V++ + +    YL  +P  A  +L+  I+  
Sbjct: 299 TGLISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGETLTEYLEFHPSVADAILDKAIQAF 358

Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIA 461
           +     R  RE V RK+ +    LPGKLADCS    
Sbjct: 359 KAAEAARHARELVRRKSVLESSPLPGKLADCSSRDP 394


>gi|148971311|gb|ABR20193.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  270 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 165/428 (38%), Positives = 242/428 (56%), Gaps = 13/428 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFDN+ Y++SGGLHGVG+SVVNALS+ L + + +   I  Q + +G P 
Sbjct: 1   EVIMTVLHAGGKFDNNLYKVSGGLHGVGVSVVNALSETLFLEIHQNGLIHRQTYHKGTPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    +   +RGT I F PD  I      F    L    +  A+L+  +      ++ 
Sbjct: 61  APLAVFGETT-QRGTIIRFWPDMTIMET-DQFSFDTLAHRFRELAFLNPVLTIHLKDEET 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
           + E       E F+F GG+++++    EN+  +   +F  KT + G+ +  V +      
Sbjct: 119 LRE-------ETFHFEGGVQSFVSFLNENKKTLHDVLFFRKTLEDGS-QFEVAFQYQEST 170

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
           EN  +  + N I T EGGTH  GLR A+T+ I ++    Q  +   +  +D+     GI+
Sbjct: 171 ENETVLGFANNIHTREGGTHVRGLRTAITKTINRFIREKQLNKGEEVRGEDVREGLTGII 230

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV I  P+F GQTK KL S      +E+ L +       ++P+ A K+ E  +  ++ R 
Sbjct: 231 SVRIPGPQFEGQTKAKLGSSWVAGAMESFLSEALQEKFEEDPLTAKKIAEKAVLTAQARE 290

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK ++   RK  +    LPGKLADC ++    +EL+IVEGDSAGGSAKQ R+R  QA+
Sbjct: 291 AARKAKDLAKRKNVLEGSNLPGKLADCQESDPAKSELYIVEGDSAGGSAKQGRDRRFQAI 350

Query: 490 LPLRGKILNVASAG-SEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVD 547
           LPL+GKILNV  +   EK   N ++  L+ A+GC    +   E+ LRY K+IIMTDADVD
Sbjct: 351 LPLKGKILNVEKSRGIEKFITNDEVRALITAVGCGLGEEEFSEKKLRYHKIIIMTDADVD 410

Query: 548 GAHIASLL 555
           G+HI +LL
Sbjct: 411 GSHIRTLL 418


>gi|68138877|gb|AAY86029.1| GyrB [Burkholderia stabilis]
          Length = 604

 Score =  270 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 155/427 (36%), Positives = 233/427 (54%), Gaps = 17/427 (3%)

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G+ +SP+       N RGT + F  DP IFG    +    L K  +  ++L+  V+   +
Sbjct: 16  GVEVSPMLVTGDTEN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLT 73

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   E         F F GG+K +++   + ++ +   IF    EK G     VE A+
Sbjct: 74  DLRSGKEDD-------FAFAGGVKGFVEYINKTKTNLHPTIFFATGEKDGV---GVEVAM 123

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W +     +  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+ 
Sbjct: 124 QWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMR 183

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                +LSV + EP+F+ QTK KLVS + +  VE  +    + +L++ PI+A  +   ++
Sbjct: 184 EGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIV 243

Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           E +  R   RK RE+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R
Sbjct: 244 EAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGR 303

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIM 541
           +R  QA+LPLRGK+LNV  A  +K+ +++QI+ LV ALGC         + LRY ++IIM
Sbjct: 304 DRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIM 363

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           TDADVDGAHI +LLLTF Y++M D+IE+ ++++  PPL++I  G    Y  D+      +
Sbjct: 364 TDADVDGAHIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHM 423

Query: 602 EEFKKHG 608
                 G
Sbjct: 424 LRLALQG 430


>gi|68138570|gb|AAY85986.1| GyrB [Burkholderia cepacia ATCC 25416]
          Length = 612

 Score =  270 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 154/427 (36%), Positives = 234/427 (54%), Gaps = 17/427 (3%)

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G+ +SP+       N RGT + F  DP IFG    +    L K  +  ++L+  V+   +
Sbjct: 24  GVEVSPMLVTGDTEN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLT 81

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   E         F F GG+K +++   + ++ +   +F    EK G     VE A+
Sbjct: 82  DLRSGKEDD-------FAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGV---GVEVAM 131

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W +     +  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+ 
Sbjct: 132 QWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMR 191

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                +LSV + EP+F+ QTK KLVS + +  VE  +    + +L++ PI+A  +   ++
Sbjct: 192 EGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIV 251

Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           E +  R   RK RE+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R
Sbjct: 252 EAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGR 311

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIM 541
           +R  QA+LPLRGK+LNV  A  +K+ +++QI+ LV ALGC    +    + LRY ++IIM
Sbjct: 312 DRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIM 371

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           TDADVDGAHI +LLLTF Y++M D+IE+ ++++  PPL++I  G    Y  D+      +
Sbjct: 372 TDADVDGAHIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHM 431

Query: 602 EEFKKHG 608
                 G
Sbjct: 432 LRLALQG 438


>gi|68138870|gb|AAY86028.1| GyrB [Burkholderia stabilis]
          Length = 597

 Score =  270 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 155/427 (36%), Positives = 233/427 (54%), Gaps = 17/427 (3%)

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G+ +SP+       N RGT + F  DP IFG    +    L K  +  ++L+  V+   +
Sbjct: 9   GVEVSPMLVTGDTEN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLT 66

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   E         F F GG+K +++   + ++ +   IF    EK G     VE A+
Sbjct: 67  DLRSGKEDD-------FAFAGGVKGFVEYINKTKTNLHPTIFFATGEKDGV---GVEVAM 116

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W +     +  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+ 
Sbjct: 117 QWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMR 176

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                +LSV + EP+F+ QTK KLVS + +  VE  +    + +L++ PI+A  +   ++
Sbjct: 177 EGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIV 236

Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           E +  R   RK RE+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R
Sbjct: 237 EAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGR 296

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIM 541
           +R  QA+LPLRGK+LNV  A  +K+ +++QI+ LV ALGC         + LRY ++IIM
Sbjct: 297 DRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIM 356

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           TDADVDGAHI +LLLTF Y++M D+IE+ ++++  PPL++I  G    Y  D+      +
Sbjct: 357 TDADVDGAHIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHM 416

Query: 602 EEFKKHG 608
                 G
Sbjct: 417 LRLALQG 423


>gi|2267070|gb|AAB63500.1| gyrase B subunit [Pseudoalteromonas luteoviolacea]
          Length = 420

 Score =  270 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 168/430 (39%), Positives = 258/430 (60%), Gaps = 15/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L +T+ R   +  QK++ G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLQLTIRRDGQVHQQKYTMGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    +     GT + F P P+ F D   F    L K  +  ++L+  V    + ++E
Sbjct: 61  APLAVIGEA-ESTGTELRFWPSPETFSDIN-FHYDILAKRLRELSFLNSGVSIILTDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   +++ F + GG++ +++     ++ +   +F   TE++     +VE ++ W +
Sbjct: 119 ------ENKQDHFKYEGGIQAFVEYLNRKKTPVHQSVFHFTTERED--GISVEVSMQWND 170

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAV 367
                I S+ N I   +GGTH +G R ALTR +  Y E      K   S   DD      
Sbjct: 171 GFQENIYSFTNNIPQRDGGTHLAGFRAALTRTLNTYMEKEGFNKKNKTSATGDDAREGLT 230

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            ++SV + +P+F+ QTK KLVS + +  VE A+ +  + +L++NP +A  ++  +++ + 
Sbjct: 231 AVVSVKVPDPKFSSQTKDKLVSSEVKGAVEQAMAEKLNEFLLENPQDAKTVVNKIVDAAR 290

Query: 428 ERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK RE+ R+   +    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR N
Sbjct: 291 AREAARKAREMTRRKGVMDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKN 350

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  E LRY  +IIMTDAD
Sbjct: 351 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYDPEKLRYHSIIIMTDAD 410

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 411 VDGSHIRTLL 420


>gi|68138740|gb|AAY86008.1| GyrB [Burkholderia cenocepacia]
          Length = 612

 Score =  270 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 154/427 (36%), Positives = 234/427 (54%), Gaps = 17/427 (3%)

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G+ +SP+       N RGT + F  DP IFG    +    L K  +  ++L+  V+   +
Sbjct: 22  GVEVSPMLVTGDTEN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLT 79

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   E         F F GG+K +++   + ++ +   +F    EK G     VE A+
Sbjct: 80  DLRSGKEDD-------FAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGV---GVEVAM 129

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W +     +  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+ 
Sbjct: 130 QWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMR 189

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                +LSV + EP+F+ QTK KLVS + +  VE  +    + +L++ PI+A  +   ++
Sbjct: 190 EGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIV 249

Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           E +  R   RK RE+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R
Sbjct: 250 EAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGR 309

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIM 541
           +R  QA+LPLRGK+LNV  A  +K+ +++QI+ LV ALGC    +    + LRY ++IIM
Sbjct: 310 DRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIM 369

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           TDADVDGAHI +LLLTF Y++M D+IE+ ++++  PPL++I  G    Y  D+      +
Sbjct: 370 TDADVDGAHIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHM 429

Query: 602 EEFKKHG 608
                 G
Sbjct: 430 LRLALQG 436


>gi|68138564|gb|AAY85985.1| GyrB [Burkholderia cepacia]
          Length = 610

 Score =  270 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 154/427 (36%), Positives = 234/427 (54%), Gaps = 17/427 (3%)

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G+ +SP+       N RGT + F  DP IFG    +    L K  +  ++L+  V+   +
Sbjct: 22  GVEVSPMLVTGDTEN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLT 79

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   E         F F GG+K +++   + ++ +   +F    EK G     VE A+
Sbjct: 80  DLRSGKEDD-------FAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGV---GVEVAM 129

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W +     +  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+ 
Sbjct: 130 QWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMR 189

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                +LSV + EP+F+ QTK KLVS + +  VE  +    + +L++ PI+A  +   ++
Sbjct: 190 EGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIV 249

Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           E +  R   RK RE+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R
Sbjct: 250 EAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGR 309

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIM 541
           +R  QA+LPLRGK+LNV  A  +K+ +++QI+ LV ALGC    +    + LRY ++IIM
Sbjct: 310 DRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIM 369

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           TDADVDGAHI +LLLTF Y++M D+IE+ ++++  PPL++I  G    Y  D+      +
Sbjct: 370 TDADVDGAHIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHM 429

Query: 602 EEFKKHG 608
                 G
Sbjct: 430 LRLALQG 436


>gi|68138774|gb|AAY86013.1| GyrB [Burkholderia cenocepacia]
          Length = 604

 Score =  270 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 154/427 (36%), Positives = 234/427 (54%), Gaps = 17/427 (3%)

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G+ +SP+       N RGT + F  DP IFG    +    L K  +  ++L+  V+   +
Sbjct: 16  GVEVSPMLVTGDTEN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLT 73

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   E         F F GG+K +++   + ++ +   +F    EK G     VE A+
Sbjct: 74  DLRSGKEDD-------FAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGV---GVEVAM 123

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W +     +  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+ 
Sbjct: 124 QWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMR 183

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                +LSV + EP+F+ QTK KLVS + +  VE  +    + +L++ PI+A  +   ++
Sbjct: 184 EGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIV 243

Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           E +  R   RK RE+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R
Sbjct: 244 EAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGR 303

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIM 541
           +R  QA+LPLRGK+LNV  A  +K+ +++QI+ LV ALGC    +    + LRY ++IIM
Sbjct: 304 DRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIM 363

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           TDADVDGAHI +LLLTF Y++M D+IE+ ++++  PPL++I  G    Y  D+      +
Sbjct: 364 TDADVDGAHIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHM 423

Query: 602 EEFKKHG 608
                 G
Sbjct: 424 LRLALQG 430


>gi|68138795|gb|AAY86016.1| GyrB [Burkholderia cenocepacia]
          Length = 599

 Score =  270 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 154/427 (36%), Positives = 234/427 (54%), Gaps = 17/427 (3%)

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G+ +SP+       N RGT + F  DP IFG    +    L K  +  ++L+  V+   +
Sbjct: 11  GVEVSPMLVTGDTEN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLT 68

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   E         F F GG+K +++   + ++ +   +F    EK G     VE A+
Sbjct: 69  DLRSGKEDD-------FAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGV---GVEVAM 118

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W +     +  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+ 
Sbjct: 119 QWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMR 178

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                +LSV + EP+F+ QTK KLVS + +  VE  +    + +L++ PI+A  +   ++
Sbjct: 179 EGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIV 238

Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           E +  R   RK RE+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R
Sbjct: 239 EAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGR 298

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIM 541
           +R  QA+LPLRGK+LNV  A  +K+ +++QI+ LV ALGC    +    + LRY ++IIM
Sbjct: 299 DRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIM 358

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           TDADVDGAHI +LLLTF Y++M D+IE+ ++++  PPL++I  G    Y  D+      +
Sbjct: 359 TDADVDGAHIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHM 418

Query: 602 EEFKKHG 608
                 G
Sbjct: 419 LRLALQG 425


>gi|68138557|gb|AAY85984.1| GyrB [Burkholderia cepacia]
          Length = 607

 Score =  270 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 154/427 (36%), Positives = 234/427 (54%), Gaps = 17/427 (3%)

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G+ +SP+       N RGT + F  DP IFG    +    L K  +  ++L+  V+   +
Sbjct: 19  GVEVSPMLVTGDTEN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLT 76

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   E         F F GG+K +++   + ++ +   +F    EK G     VE A+
Sbjct: 77  DLRSGKEDD-------FAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGV---GVEVAM 126

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W +     +  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+ 
Sbjct: 127 QWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMR 186

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                +LSV + EP+F+ QTK KLVS + +  VE  +    + +L++ PI+A  +   ++
Sbjct: 187 EGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIV 246

Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           E +  R   RK RE+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R
Sbjct: 247 EAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGR 306

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIM 541
           +R  QA+LPLRGK+LNV  A  +K+ +++QI+ LV ALGC    +    + LRY ++IIM
Sbjct: 307 DRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIM 366

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           TDADVDGAHI +LLLTF Y++M D+IE+ ++++  PPL++I  G    Y  D+      +
Sbjct: 367 TDADVDGAHIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHM 426

Query: 602 EEFKKHG 608
                 G
Sbjct: 427 LRLALQG 433


>gi|68138710|gb|AAY86004.1| GyrB [Burkholderia cenocepacia]
          Length = 603

 Score =  270 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 154/427 (36%), Positives = 234/427 (54%), Gaps = 17/427 (3%)

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G+ +SP+       N RGT + F  DP IFG    +    L K  +  ++L+  V+   +
Sbjct: 12  GVEVSPMLVTGDTEN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLT 69

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   E         F F GG+K +++   + ++ +   +F    EK G     VE A+
Sbjct: 70  DLRSGKEDD-------FAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGV---GVEVAM 119

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W +     +  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+ 
Sbjct: 120 QWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMR 179

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                +LSV + EP+F+ QTK KLVS + +  VE  +    + +L++ PI+A  +   ++
Sbjct: 180 EGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIV 239

Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           E +  R   RK RE+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R
Sbjct: 240 EAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGR 299

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIM 541
           +R  QA+LPLRGK+LNV  A  +K+ +++QI+ LV ALGC    +    + LRY ++IIM
Sbjct: 300 DRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIM 359

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           TDADVDGAHI +LLLTF Y++M D+IE+ ++++  PPL++I  G    Y  D+      +
Sbjct: 360 TDADVDGAHIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHM 419

Query: 602 EEFKKHG 608
                 G
Sbjct: 420 LRLALQG 426


>gi|68138767|gb|AAY86012.1| GyrB [Burkholderia cenocepacia]
          Length = 594

 Score =  270 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 154/427 (36%), Positives = 234/427 (54%), Gaps = 17/427 (3%)

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G+ +SP+       N RGT + F  DP IFG    +    L K  +  ++L+  V+   +
Sbjct: 17  GVEVSPMLVTGDTEN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLT 74

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   E         F F GG+K +++   + ++ +   +F    EK G     VE A+
Sbjct: 75  DLRSGKEDD-------FAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGV---GVEVAM 124

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W +     +  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+ 
Sbjct: 125 QWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMR 184

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                +LSV + EP+F+ QTK KLVS + +  VE  +    + +L++ PI+A  +   ++
Sbjct: 185 EGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIV 244

Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           E +  R   RK RE+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R
Sbjct: 245 EAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGR 304

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIM 541
           +R  QA+LPLRGK+LNV  A  +K+ +++QI+ LV ALGC    +    + LRY ++IIM
Sbjct: 305 DRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIM 364

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           TDADVDGAHI +LLLTF Y++M D+IE+ ++++  PPL++I  G    Y  D+      +
Sbjct: 365 TDADVDGAHIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHM 424

Query: 602 EEFKKHG 608
                 G
Sbjct: 425 LRLALQG 431


>gi|6456476|dbj|BAA86938.1| gyrase B subunit [Vibrio hollisae]
          Length = 420

 Score =  270 bits (689), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 163/430 (37%), Positives = 251/430 (58%), Gaps = 15/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L +T+ R   +  Q +  G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELTIWRHGHVHQQIYRMGVPE 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            PLE      ++ GTRI F P  + F D   F    L K  +  ++L+  V      ++E
Sbjct: 61  KPLEVIGDT-DETGTRIRFWPSDETFSD-TTFHYDILAKRLRELSFLNSGVSIKLIDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + + F + GG++ +++    N++ I   +F  + E++     +VE ++ W +
Sbjct: 119 ------ENKHDHFMYEGGIRAFVEHLNRNKTPIHPTVFHFEHERED--GVSVEVSMQWND 170

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R ALTR +  + +      K   +   DD      
Sbjct: 171 GFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNNFMDKEGYSKKAKAATSGDDAREGLT 230

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +L++NP ++  +   +I+   
Sbjct: 231 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLAEFLIENPQDSKIVCSKIIDAAR 290

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR N
Sbjct: 291 AREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKN 350

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDAD
Sbjct: 351 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDAD 410

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 411 VDGSHIRTLL 420


>gi|148971301|gb|ABR20188.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 162/428 (37%), Positives = 240/428 (56%), Gaps = 13/428 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFDN+ Y++SGGLHGVG+SVVNALS+ L + + +   I  Q + +G P 
Sbjct: 1   EVIMTVLHAGGKFDNNLYKVSGGLHGVGVSVVNALSETLFLEIHQNGLIHRQTYHKGTPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    +   +RGT I F PD  I      F    L    +  A+L+  +    + ++ 
Sbjct: 61  APLAVFGETT-QRGTIIRFWPDMTIMET-DQFSFDTLAHRFRELAFLNPVLTIHLNDEET 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
           + E       E F+F GG+++++    EN+  +   +F  KT + G+ +  V +      
Sbjct: 119 LRE-------ETFHFEGGVQSFVSFLNENKKTLHDVLFFRKTLEDGS-QFEVAFQYQEST 170

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
           EN  +  + N I T EGGTH  G R A+T+ I ++    Q  +   +  +D+     GI+
Sbjct: 171 ENETVLGFANNIHTREGGTHVRGFRTAITKTINRFIREKQLNKGEEVRGEDVREGLTGII 230

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV    P+F GQTK KL S      +E+ L +       ++P+ A K+ E  +  ++ R 
Sbjct: 231 SVRTPGPQFEGQTKAKLGSSWVAGAMESFLSEALQEKFEEDPLTAKKIAEKAVLTAQARE 290

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK ++   RK  +    LPGKLADC ++    +EL+IVEGDSAGGSAKQ R+R  QA+
Sbjct: 291 AARKAKDLAKRKNVLEGSNLPGKLADCQESDPAKSELYIVEGDSAGGSAKQGRDRRFQAI 350

Query: 490 LPLRGKILNVASAG-SEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVD 547
           LPL+GKILNV  +   EK   N ++  L+ A+GC    +   E+ LRY K+ IMTDADVD
Sbjct: 351 LPLKGKILNVEKSRGIEKFITNDEVRALITAVGCGLGEEEFSEKKLRYHKITIMTDADVD 410

Query: 548 GAHIASLL 555
           G+HI +LL
Sbjct: 411 GSHIRTLL 418


>gi|2196850|gb|AAB80842.1| DNA gyrase beta-subunit [Citrobacter sp. AQ-2]
          Length = 419

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 161/430 (37%), Positives = 249/430 (57%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHA  KF+ ++Y++SGGLHGVG+SVVNALS +L + + R+  +  Q +  G+P 
Sbjct: 1   EVIMTVLHALEKFEANSYKVSGGLHGVGVSVVNALSQKLELVIRREGKVHQQTYMHGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    +     GT++ F P  + F +   F+   L K  +  ++L+  V       ++
Sbjct: 61  APLAVTGET-EVTGTQVRFWPSHETFTNVVEFEYDILAKRLRELSFLNSGVSIRLRDKRD 119

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +
Sbjct: 120 GKE-------DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     +
Sbjct: 170 GFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLI 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+   
Sbjct: 230 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                RR + +  RK A+    LPGKLADC +      EL++VEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARRAREKTRRKGALDLAGLPGKLADCQERDPAHFELYLVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY+ +I++TDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYQSIIMITDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHILTLL 419


>gi|66009696|gb|AAY42698.1| GyrB [Burkholderia anthina]
          Length = 614

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 158/452 (34%), Positives = 237/452 (52%), Gaps = 29/452 (6%)

Query: 174 ARQNTIFSQKFSRGIP------------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
            R       +F RGI             +SP+       N RGT + F  DP IFG    
Sbjct: 1   RRNGKKHFMEFHRGIAQDRVLEKVDGVEVSPMLVTGDTEN-RGTEVHFMADPTIFGTV-E 58

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +    L K  +  ++L+  V+   +  +   E         F F GG+K +++   + ++
Sbjct: 59  YHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD-------FAFAGGVKGFVEYINKTKT 111

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            +   +F    EK G     VE A+ W +     +  + N I   +GGTH +GLR A+TR
Sbjct: 112 NLHPTVFHAIGEKDGV---GVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTR 168

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I KY    +   K  +    DD+      +LSV + EP+F+ QTK KLVS + +  VE 
Sbjct: 169 VINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEE 228

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCS 457
            +    + +L++ PI+A  +   ++E +  R   RK RE+ R+   +  + LPGKLADC 
Sbjct: 229 VVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVGLPGKLADCQ 288

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+LNV  A  +K+ +++QI+ LV
Sbjct: 289 EKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLV 348

Query: 518 QALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
            ALGC         + LRY ++IIMTDADVDGAHI +LLLTF Y++M D+IE+ ++++  
Sbjct: 349 TALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQMPDMIERGYVYIAQ 408

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           PPL++I  G    Y  D+      +      G
Sbjct: 409 PPLYKIKAGKDERYLKDDVELNAHMLRLALQG 440


>gi|68138801|gb|AAY86017.1| GyrB [Burkholderia cenocepacia]
          Length = 603

 Score =  269 bits (688), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 154/427 (36%), Positives = 234/427 (54%), Gaps = 17/427 (3%)

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G+ +SP+       N RGT + F  DP IFG    +    L K  +  ++L+  V+   +
Sbjct: 15  GVEVSPMLVTGDTEN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLT 72

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   E         F F GG+K +++   + ++ +   +F    EK G     VE A+
Sbjct: 73  DLRSGKEDD-------FAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGV---GVEVAM 122

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W +     +  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+ 
Sbjct: 123 QWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMR 182

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                +LSV + EP+F+ QTK KLVS + +  VE  +    + +L++ PI+A  +   ++
Sbjct: 183 EGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIV 242

Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           E +  R   RK RE+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R
Sbjct: 243 EAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGR 302

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIM 541
           +R  QA+LPLRGK+LNV  A  +K+ +++QI+ LV ALGC    +    + LRY ++IIM
Sbjct: 303 DRKFQAILPLRGKVLNVEKARYDKLLSSKQIVTLVTALGCGIGKEDYNLDKLRYHRIIIM 362

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           TDADVDGAHI +LLLTF Y++M D+IE+ ++++  PPL++I  G    Y  D+      +
Sbjct: 363 TDADVDGAHIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHM 422

Query: 602 EEFKKHG 608
                 G
Sbjct: 423 LRLALQG 429


>gi|68138722|gb|AAY86006.1| GyrB [Burkholderia cenocepacia]
          Length = 612

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 154/427 (36%), Positives = 233/427 (54%), Gaps = 17/427 (3%)

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G+ +SP+       N RGT + F  DP IFG    +    L K  +  + L+  V+   +
Sbjct: 21  GVEVSPMLVTGDTEN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSLLNNGVRIRLT 78

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   E         F F GG+K +++   + ++ +   +F    EK G     VE A+
Sbjct: 79  DLRSGKEDD-------FAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGV---GVEVAM 128

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W +     +  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+ 
Sbjct: 129 QWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMR 188

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                +LSV + EP+F+ QTK KLVS + +  VE  +    + +L++ PI+A  +   ++
Sbjct: 189 EGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIV 248

Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           E +  R   RK RE+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R
Sbjct: 249 EAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGR 308

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIM 541
           +R  QA+LPLRGK+LNV  A  +K+ +++QI+ LV ALGC    +    + LRY ++IIM
Sbjct: 309 DRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIM 368

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           TDADVDGAHI +LLLTF Y++M D+IE+ ++++  PPL++I  G    Y  D+      +
Sbjct: 369 TDADVDGAHIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHM 428

Query: 602 EEFKKHG 608
                 G
Sbjct: 429 LRLALQG 435


>gi|312262428|gb|ADQ52723.1| gp60plus39 DNA topoisomerase subunit [Aeromonas phage PX29]
          Length = 614

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 143/658 (21%), Positives = 244/658 (37%), Gaps = 88/658 (13%)

Query: 46  ASSIRILEGLEPVRMRPGMYIG--GTDE---------------KALHHLFSEVIDNAMDE 88
           +   ++L   E   +   MYIG   T+                  L  +  EVIDN +DE
Sbjct: 2   SQDFKVLSDKEHCLINTDMYIGAISTEVHDVLVDGKFVPHAYVPGLVKITDEVIDNCVDE 61

Query: 89  VIAG---YANLIEVSLDGNGFLTVVDNGRGIPVENH--PKFPNKSTLEIILTTLHAGGKF 143
            I     +AN IEV +  +  +TV DNGRG+P +    P+           T   AG  F
Sbjct: 62  AIRTSFEHANQIEVFI-KDNQVTVKDNGRGLPQQIVKTPEGDEVPLPLAAWTRARAGSNF 120

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
                  + G +GVG ++ N  SD          ++ + + +            K    +
Sbjct: 121 SAD--RKTIGKNGVGSALTNFFSDSFVGETGNGKSVVTVRCTNNADEVSYT--TKEGKFK 176

Query: 204 GTRITFRPDPKIFGDKA--GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           GT +TF PD   FG           +     + A    +    +  + +  E        
Sbjct: 177 GTVVTFVPDFTRFGVFQLDDQFEQVIQSRLITLAVNFPQ--ITFKYNGKKVESKFNKFAA 234

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
           +F                             E    +   V   IA  +E     S+ N 
Sbjct: 235 QF----------------------------GEVISHNDDNVSLFIANSDEF-RQLSFVNG 265

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
           + T +GG H +G+  +L+  +     + +  +     +       +G+    +  P++ G
Sbjct: 266 VHTKQGGNHVTGIIDSLSDEL--IPMIKRQHKIEIPKARIKECLLIGLFIRDLIAPKYDG 323

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK +L S  +Q        +     L +  ++  ++++ +IE +  +     +    + 
Sbjct: 324 QTKERLSSPWSQIR---DHMNLDYKALARKMLKTPEVIDPIIESALAKKEAADKAAATKA 380

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
               K     K    S      T LF+ EGDSA G   + RN   Q   PLRGK+LNV  
Sbjct: 381 QKKAKKANVAKHVKASGMGRVKTMLFLAEGDSAIGPFTRFRNEETQGSYPLRGKMLNVWD 440

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH-IASLLLTFFY 560
               ++  N++I +L+  L    RS+       Y  + IMTDAD DG   IA L + FFY
Sbjct: 441 LPDHEVLKNKEISELLGILNVDLRSKEAP---AYSDIAIMTDADQDGKGSIAMLAIAFFY 497

Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
           +      EQ  ++++  P +  T G K+ +++  E  +       K    K      KGL
Sbjct: 498 KYWPQWFEQGRIYIVRTPEYISTNGKKTDWSYSREEFRA------KKFDSKWTHRHIKGL 551

Query: 621 G----EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
           G    E    + K+   +     L +V ++        T + +  L G    +R +++
Sbjct: 552 GSLTVEGDDCEYKQCIENL---VLEQVVVD------SKTPELLEMLFGKDERKRKQWL 600


>gi|4894893|gb|AAD32645.1|AF136385_1 gyrase B [Photobacterium leiognathi]
          Length = 419

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 162/429 (37%), Positives = 253/429 (58%), Gaps = 15/429 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I  Q +  G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIKRGGHIHQQVYRHGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL       ++ GTRI F P  + F +   F    L K  +  ++L+  V    + ++E
Sbjct: 61  APLAVIGDT-DETGTRIRFWPSEETFTN-IEFQYEILAKRLRELSFLNSGVSIKLNDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + + F + GG++ +++    N++ I  ++F   +E+   +  +VE A+ W +
Sbjct: 119 ------ESKHDHFMYEGGIQAFVEHLNRNKTPIHPKVFHFDSERD--YGISVEVAMQWND 170

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R ALTR +  + +      K   +   DD      
Sbjct: 171 GFQESIFCFTNNIPQRDGGTHLAGFRGALTRTLNSFMDKESYSKKAKAATSGDDAREGLT 230

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS- 426
            ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +L++NP +A  +   +I+ S 
Sbjct: 231 AVISVKVPDPKFSSQTKDKLVSSEVKAAVESAMNEKLAEFLLENPADAKTVCTKIIDASR 290

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR N
Sbjct: 291 AREAARKAREMTRRKGALDLTGLPGKLADCQEKDPAVSELYIVEGDSAGGSAKQGRNRKN 350

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDAD
Sbjct: 351 QAILPLKGKILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDAD 410

Query: 546 VDGAHIASL 554
           VDG+HI +L
Sbjct: 411 VDGSHIRTL 419


>gi|68138781|gb|AAY86014.1| GyrB [Burkholderia cenocepacia]
          Length = 604

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 153/427 (35%), Positives = 234/427 (54%), Gaps = 17/427 (3%)

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G+ +SP+       N RGT + F  DP IFG    +    L K  +  ++L+  V+   +
Sbjct: 16  GVEVSPMLVTGDTEN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLT 73

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   E         F F GG+K +++   + ++ +   +F    EK G     VE A+
Sbjct: 74  DLRSGKEDD-------FAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGV---GVEVAM 123

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W +     +  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+ 
Sbjct: 124 QWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMR 183

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                +LSV + EP+F+ QTK KLVS + +  VE  +    + +L++ PI+A  +   ++
Sbjct: 184 EGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIV 243

Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           E +  R   RK RE+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R
Sbjct: 244 EAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGR 303

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIM 541
           +R  QA+LPLRGK+LNV  A  +K+ +++QI+ LV ALGC    +    + LRY ++IIM
Sbjct: 304 DRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIM 363

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           TDADVDGAHI +LLLTF Y++M D++E+ ++++  PPL++I  G    Y  D+      +
Sbjct: 364 TDADVDGAHIRTLLLTFLYRQMPDMVERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHM 423

Query: 602 EEFKKHG 608
                 G
Sbjct: 424 LRLALQG 430


>gi|83954053|ref|ZP_00962773.1| DNA topoisomerase IV subunit B [Sulfitobacter sp. NAS-14.1]
 gi|83841090|gb|EAP80260.1| DNA topoisomerase IV subunit B [Sulfitobacter sp. NAS-14.1]
          Length = 308

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 134/253 (52%), Positives = 167/253 (66%), Gaps = 4/253 (1%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              QS +  YDASSI++LE +E VR+RPGMYIGG D++ALHH+ +E+IDN+MDE +AG+A
Sbjct: 6   SGAQSNAKEYDASSIQVLEDMEHVRLRPGMYIGGKDDRALHHMVAEIIDNSMDEAVAGHA 65

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             IE+ L  NG +TV DNGRGIP + HPK P+KS LEII  TL+AGGKF   +YE SGGL
Sbjct: 66  TWIELELHENGHVTVRDNGRGIPTDPHPKDPSKSALEIIFCTLNAGGKFSGDSYETSGGL 125

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG SVVNALSD L V VAR   +F+ +FSRGIP   LEK     N+RGT +TF PD +
Sbjct: 126 HGVGSSVVNALSDHLRVEVARNRELFAMEFSRGIPQGKLEKIGAAPNRRGTAVTFHPDAE 185

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IFG       ARL  M +SKAYL   V+  W C     +    P++  F+FPGGL  YL 
Sbjct: 186 IFGP-LKLKPARLFTMARSKAYLFSGVEIRWKC---GQQDGDTPQEATFHFPGGLSDYLN 241

Query: 275 TKLENRSLISSEI 287
             L+  +   S  
Sbjct: 242 ETLKGSTTTPSIP 254


>gi|68138789|gb|AAY86015.1| GyrB [Burkholderia cenocepacia]
          Length = 603

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 153/427 (35%), Positives = 233/427 (54%), Gaps = 17/427 (3%)

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G+ +SP+       N RGT + F  DP IFG    +    L K  +  ++L+  V+   +
Sbjct: 15  GVEVSPMLVTGDTEN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLT 72

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   E         F F GG+K +++   + ++ +   +F    EK G     VE A+
Sbjct: 73  DLRSGKEDD-------FAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGV---GVEVAM 122

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W +     +  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+ 
Sbjct: 123 QWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMR 182

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                +LSV + EP+F+ QTK KLVS + +  VE  +    + +L++ PI+A  +   ++
Sbjct: 183 EGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIV 242

Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           E +  R   RK RE+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R
Sbjct: 243 EAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGR 302

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIM 541
           +R  QA+LPLRGK+LNV  A  +K+ +++ I+ LV ALGC    +    + LRY ++IIM
Sbjct: 303 DRKFQAILPLRGKVLNVEKARYDKLLSSEPIVTLVTALGCGIGKEDYNLDKLRYHRIIIM 362

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           TDADVDGAHI +LLLTF Y++M D+IE+ ++++  PPL++I  G    Y  D+      +
Sbjct: 363 TDADVDGAHIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHM 422

Query: 602 EEFKKHG 608
                 G
Sbjct: 423 LRLALQG 429


>gi|68138646|gb|AAY85996.1| GyrB [Burkholderia cenocepacia]
          Length = 598

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 157/427 (36%), Positives = 234/427 (54%), Gaps = 17/427 (3%)

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G+ +SP+       N RGT + F  DP IFG    +    L K  +  +YL+  V+   +
Sbjct: 10  GVEVSPMLVTGDTEN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSYLNNGVRIRLT 67

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   E         F F GG+K +++   + +S +   +F    EK G     VE A+
Sbjct: 68  DLRSGKEDD-------FAFAGGVKGFVEFINKTKSTLHPTVFFANGEKDGV---GVEVAM 117

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W +     +  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+ 
Sbjct: 118 QWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMR 177

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                +LSV + EP+F+ QTK KLVS + +  VE  +    + +L++ PI+A  +   ++
Sbjct: 178 EGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIV 237

Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           E +  R   RK RE+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R
Sbjct: 238 EAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGR 297

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIM 541
           +R  QA+LPLRGK+LNV  A  +K+ +++QI+ LV ALGC    +    E LRY ++IIM
Sbjct: 298 DRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLEKLRYHRIIIM 357

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           TDADVDGAHI +LLLTF Y++M D+IE+ ++++  PPL++I  G    Y  D+      +
Sbjct: 358 TDADVDGAHIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHM 417

Query: 602 EEFKKHG 608
                 G
Sbjct: 418 LRLALQG 424


>gi|68138681|gb|AAY86000.1| GyrB [Burkholderia cenocepacia]
          Length = 613

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 159/451 (35%), Positives = 238/451 (52%), Gaps = 29/451 (6%)

Query: 175 RQNTIFSQKFSRGIP------------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           R       +F RG+             +SP+       N RGT + F  DP IFG    +
Sbjct: 1   RDGKKRFMEFHRGVAQDRVIEVVDGVEVSPMLVTGDTEN-RGTEVHFMADPTIFGTV-EY 58

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  ++L+  V+   +  +   E         F F GG+K +++   + +S 
Sbjct: 59  HYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD-------FAFAGGVKGFVEFINKTKST 111

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +   +F    EK G     VE A+ W +     +  + N I   +GGTH +GLR A+TR 
Sbjct: 112 LHPTVFFANGEKDGV---GVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRV 168

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I KY    +   K  +    DD+      +LSV + EP+F+ QTK KLVS + +  VE  
Sbjct: 169 INKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEV 228

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458
           +    + +L++ PI+A  +   ++E +  R   RK RE+ R+   +  + LPGKLADC +
Sbjct: 229 VAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVGLPGKLADCQE 288

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+LNV  A  +K+ +++QI+ LV 
Sbjct: 289 KDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVT 348

Query: 519 ALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
           ALGC    +    E LRY ++IIMTDADVDGAHI +LLLTF Y++M D+IE+ ++++  P
Sbjct: 349 ALGCGIGKEDYNLEKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQMPDMIERGYVYIAQP 408

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           PL++I  G    Y  D+      +      G
Sbjct: 409 PLYKIKAGKDERYLKDDVELNAHMLRLALQG 439


>gi|68138858|gb|AAY86026.1| GyrB [Burkholderia cenocepacia]
          Length = 599

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 156/427 (36%), Positives = 234/427 (54%), Gaps = 17/427 (3%)

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G+ +SP+       N RGT + F  DP IFG    +    L K  +  ++L+  V+   +
Sbjct: 11  GVEVSPMLVTGDTEN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLT 68

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   E         F F GG+K +++   + +S +   +F    EK G     VE A+
Sbjct: 69  DLRSGKEDD-------FAFAGGVKGFVEFINKTKSTLHPTVFFANGEKDGV---GVEVAM 118

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W +     +  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+ 
Sbjct: 119 QWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMR 178

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                +LSV + EP+F+ QTK KLVS + +  VE  +    + +L++ PI+A  +   ++
Sbjct: 179 EGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIV 238

Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           E +  R   RK RE+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R
Sbjct: 239 EAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGR 298

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIM 541
           +R  QA+LPLRGK+LNV  A  +K+ +++QI+ LV ALGC    +    E LRY ++IIM
Sbjct: 299 DRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLEKLRYHRIIIM 358

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           TDADVDGAHI +LLLTF Y++M D+IE+ ++++  PPL++I  G    Y  D+      +
Sbjct: 359 TDADVDGAHIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHM 418

Query: 602 EEFKKHG 608
                 G
Sbjct: 419 LRLALQG 425


>gi|68138828|gb|AAY86021.1| GyrB [Burkholderia cenocepacia]
 gi|68138836|gb|AAY86022.1| GyrB [Burkholderia cenocepacia]
 gi|68138842|gb|AAY86023.1| GyrB [Burkholderia cenocepacia]
 gi|68138847|gb|AAY86024.1| GyrB [Burkholderia cenocepacia]
 gi|68138853|gb|AAY86025.1| GyrB [Burkholderia cenocepacia]
          Length = 605

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 156/427 (36%), Positives = 234/427 (54%), Gaps = 17/427 (3%)

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G+ +SP+       N RGT + F  DP IFG    +    L K  +  ++L+  V+   +
Sbjct: 17  GVEVSPMLVTGDTEN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLT 74

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   E         F F GG+K +++   + +S +   +F    EK G     VE A+
Sbjct: 75  DLRSGKEDD-------FAFAGGVKGFVEFINKTKSTLHPTVFFANGEKDGV---GVEVAM 124

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W +     +  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+ 
Sbjct: 125 QWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMR 184

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                +LSV + EP+F+ QTK KLVS + +  VE  +    + +L++ PI+A  +   ++
Sbjct: 185 EGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIV 244

Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           E +  R   RK RE+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R
Sbjct: 245 EAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGR 304

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIM 541
           +R  QA+LPLRGK+LNV  A  +K+ +++QI+ LV ALGC    +    E LRY ++IIM
Sbjct: 305 DRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLEKLRYHRIIIM 364

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           TDADVDGAHI +LLLTF Y++M D+IE+ ++++  PPL++I  G    Y  D+      +
Sbjct: 365 TDADVDGAHIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHM 424

Query: 602 EEFKKHG 608
                 G
Sbjct: 425 LRLALQG 431


>gi|68138821|gb|AAY86020.1| GyrB [Burkholderia cenocepacia]
          Length = 606

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 156/427 (36%), Positives = 234/427 (54%), Gaps = 17/427 (3%)

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G+ +SP+       N RGT + F  DP IFG    +    L K  +  ++L+  V+   +
Sbjct: 18  GVEVSPMLVTGDTEN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLT 75

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   E         F F GG+K +++   + +S +   +F    EK G     VE A+
Sbjct: 76  DLRSGKEDD-------FAFAGGVKGFVEFINKTKSTLHPTVFFANGEKDGV---GVEVAM 125

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W +     +  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+ 
Sbjct: 126 QWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMR 185

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                +LSV + EP+F+ QTK KLVS + +  VE  +    + +L++ PI+A  +   ++
Sbjct: 186 EGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIV 245

Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           E +  R   RK RE+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R
Sbjct: 246 EAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGR 305

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIM 541
           +R  QA+LPLRGK+LNV  A  +K+ +++QI+ LV ALGC    +    E LRY ++IIM
Sbjct: 306 DRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLEKLRYHRIIIM 365

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           TDADVDGAHI +LLLTF Y++M D+IE+ ++++  PPL++I  G    Y  D+      +
Sbjct: 366 TDADVDGAHIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHM 425

Query: 602 EEFKKHG 608
                 G
Sbjct: 426 LRLALQG 432


>gi|68138863|gb|AAY86027.1| GyrB [Burkholderia cenocepacia]
          Length = 605

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 156/427 (36%), Positives = 234/427 (54%), Gaps = 17/427 (3%)

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G+ +SP+       N RGT + F  DP IFG    +    L K  +  ++L+  V+   +
Sbjct: 17  GVEVSPMLVTGDTEN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLT 74

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   E         F F GG+K +++   + +S +   +F    EK G     VE A+
Sbjct: 75  DLRSGKEDD-------FAFAGGVKGFVEFINKTKSTLHPTVFFANGEKDGV---GVEVAM 124

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W +     +  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+ 
Sbjct: 125 QWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMR 184

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                +LSV + EP+F+ QTK KLVS + +  VE  +    + +L++ PI+A  +   ++
Sbjct: 185 EGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIV 244

Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           E +  R   RK RE+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R
Sbjct: 245 EAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGR 304

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIM 541
           +R  QA+LPLRGK+LNV  A  +K+ +++QI+ LV ALGC    +    E LRY ++IIM
Sbjct: 305 DRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLEKLRYHRIIIM 364

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           TDADVDGAHI +LLLTF Y++M D+IE+ ++++  PPL++I  G    Y  D+      +
Sbjct: 365 TDADVDGAHIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHM 424

Query: 602 EEFKKHG 608
                 G
Sbjct: 425 LRLALQG 431


>gi|68138664|gb|AAY85998.1| GyrB [Burkholderia cenocepacia]
          Length = 611

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 156/427 (36%), Positives = 234/427 (54%), Gaps = 17/427 (3%)

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G+ +SP+       N RGT + F  DP IFG    +    L K  +  ++L+  V+   +
Sbjct: 23  GVEVSPMLVTGDTEN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLT 80

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   E         F F GG+K +++   + +S +   +F    EK G     VE A+
Sbjct: 81  DLRSGKEDD-------FAFAGGVKGFVEFINKTKSTLHPTVFFANGEKDGV---GVEVAM 130

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W +     +  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+ 
Sbjct: 131 QWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMR 190

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                +LSV + EP+F+ QTK KLVS + +  VE  +    + +L++ PI+A  +   ++
Sbjct: 191 EGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIV 250

Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           E +  R   RK RE+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R
Sbjct: 251 EAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGR 310

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIM 541
           +R  QA+LPLRGK+LNV  A  +K+ +++QI+ LV ALGC    +    E LRY ++IIM
Sbjct: 311 DRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLEKLRYHRIIIM 370

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           TDADVDGAHI +LLLTF Y++M D+IE+ ++++  PPL++I  G    Y  D+      +
Sbjct: 371 TDADVDGAHIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHM 430

Query: 602 EEFKKHG 608
                 G
Sbjct: 431 LRLALQG 437


>gi|68138652|gb|AAY85997.1| GyrB [Burkholderia cenocepacia]
          Length = 595

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 156/427 (36%), Positives = 234/427 (54%), Gaps = 17/427 (3%)

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G+ +SP+       N RGT + F  DP IFG    +    L K  +  ++L+  V+   +
Sbjct: 7   GVEVSPMLVTGDTEN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLT 64

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   E         F F GG+K +++   + +S +   +F    EK G     VE A+
Sbjct: 65  DLRSGKEDD-------FAFAGGVKGFVEFINKTKSTLHPTVFFANGEKDGV---GVEVAM 114

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W +     +  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+ 
Sbjct: 115 QWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMR 174

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                +LSV + EP+F+ QTK KLVS + +  VE  +    + +L++ PI+A  +   ++
Sbjct: 175 EGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIV 234

Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           E +  R   RK RE+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R
Sbjct: 235 EAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGR 294

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIM 541
           +R  QA+LPLRGK+LNV  A  +K+ +++QI+ LV ALGC    +    E LRY ++IIM
Sbjct: 295 DRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLEKLRYHRIIIM 354

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           TDADVDGAHI +LLLTF Y++M D+IE+ ++++  PPL++I  G    Y  D+      +
Sbjct: 355 TDADVDGAHIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHM 414

Query: 602 EEFKKHG 608
                 G
Sbjct: 415 LRLALQG 421


>gi|2267074|gb|AAB63502.1| gyrase B subunit [Pseudoalteromonas rubra]
          Length = 423

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 162/432 (37%), Positives = 254/432 (58%), Gaps = 16/432 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L +T+ R+  ++ Q ++ G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKLTIRREGKLYEQFYTMGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL          GT + F P  + F +   F    L K  +  ++L+  V    + ++E
Sbjct: 61  APLAAIGD-SETTGTELRFWPSAETFTN-LDFHYDILAKRLRELSFLNSGVSIILNDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + + F + GG++ +++    N++ +   +F    E++     +VE ++ W +
Sbjct: 119 ------ENKSDHFKYEGGIRAFVEYLNRNKTPVHKGVFHFTHERE-EDGISVEVSMQWND 171

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYA----ELTQNKRAISIISDDLMIS 365
                I  + N I   +GGTH +G R ALTR +  Y        + K   +   DD    
Sbjct: 172 AFRENIYCFTNNIPQRDGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREG 231

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE- 424
              ++SV + +P+F+ QTK KLVS + +  VE A+ + F  +L++NP++A  ++  +I+ 
Sbjct: 232 LTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQAMAEKFTEFLLENPMDAKIVVGKIIDA 291

Query: 425 RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
                  R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR
Sbjct: 292 ARAREAARKAREMTRRKGAMDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNR 351

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTD 543
            NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  E LRY ++IIMTD
Sbjct: 352 KNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPEKLRYHRIIIMTD 411

Query: 544 ADVDGAHIASLL 555
           ADVDG+HI +LL
Sbjct: 412 ADVDGSHIRTLL 423


>gi|284953788|gb|ADC32367.1| gyrase B subunit [Vibrio sp. WH134]
          Length = 420

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 163/430 (37%), Positives = 248/430 (57%), Gaps = 15/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+++ + + R  ++ +Q +  G P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELVINRGGSVHTQTYCHGEPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           SPL    +  +  GT I F P  + F +   F    L K  +  ++L+  +      ++E
Sbjct: 61  SPLAVIGET-DTTGTFIRFWPSAETFAN-IEFHYDILAKRLRELSFLNSGISIKLIDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + + F + GG++ +++    N++ I  ++F    E++      VE A+ W +
Sbjct: 119 ------EDKNDHFMYEGGIQAFVEHLNTNKTPIHEKVFHFDFERED--GIAVEVAMQWND 170

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R ALTR I  + +      K   S   DD      
Sbjct: 171 GFQENIYCFTNNIPQRDGGTHLAGFRAALTRTINTFMDKEGFSKKEKTSTSGDDAREGLT 230

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE+ + +    +L++NP EA  +   +I+   
Sbjct: 231 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVESVMGEKLTDFLIENPNEAKTVCSKIIDAAR 290

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR N
Sbjct: 291 AREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKN 350

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  VIIMTDAD
Sbjct: 351 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNVIIMTDAD 410

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 411 VDGSHIRTLL 420


>gi|289804021|ref|ZP_06534650.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 624

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 144/393 (36%), Positives = 225/393 (57%), Gaps = 15/393 (3%)

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +N+
Sbjct: 1   EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKNK 53

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A+T
Sbjct: 54  TPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMT 110

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE
Sbjct: 111 RTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 170

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADC 456
             + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLADC
Sbjct: 171 QQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADC 230

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L
Sbjct: 231 QERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATL 290

Query: 517 VQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           + ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ 
Sbjct: 291 ITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIA 350

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
            PPL+++ +G +  Y  D+E   +        G
Sbjct: 351 QPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 383



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ LE   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 539 FEQALEWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAI----AAD 594

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 595 QLFTTLMGDAVEPRRAFIEENALKAANID 623


>gi|310780945|gb|ADP23948.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 375

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 142/388 (36%), Positives = 214/388 (55%), Gaps = 17/388 (4%)

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133
           LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+ 
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVA 59

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + L
Sbjct: 60  LTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDL 119

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           E   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  E
Sbjct: 120 EVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGKE 177

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
                  E F + GG+ ++++    N+ ++  E    + +        VE  + + +   
Sbjct: 178 -------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNDSYN 227

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
             I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I+
Sbjct: 228 ENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIV 287

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV ++ P+F GQTKTKL + + +  VEN + D    +L +NP  A  ++E   + +  R 
Sbjct: 288 SVKLKNPQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARARE 347

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCS 457
             RK RE   RK+A+    LPGKLADCS
Sbjct: 348 AARKARELTRRKSALENTTLPGKLADCS 375


>gi|2267078|gb|AAB63504.1| gyrase B subunit [Pseudoalteromonas undina]
          Length = 423

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 162/432 (37%), Positives = 253/432 (58%), Gaps = 16/432 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L +T+ R+  ++ Q ++ G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKLTIRREGKLYEQFYTMGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL          GT + F P  + F +   F    L K  +  ++L+  V    + ++E
Sbjct: 61  APLAAIGD-SETTGTELRFWPSAETFTN-LDFHYDILAKRLRELSFLNSGVSIILNDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + + F + GG++ +++    N++ +   +F    E++      VE ++ W +
Sbjct: 119 ------ENKSDHFKYEGGIRAFVEYLNRNKTPVHKGVFHFTHERE-EDGIGVEVSMQWND 171

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYA----ELTQNKRAISIISDDLMIS 365
                I  + N I   +GGTH +G R ALTR +  Y        + K   +   DD    
Sbjct: 172 AFQENIYCFTNNIPQRDGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREG 231

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE- 424
              ++SV + +P+F+ QTK KLVS + +  VE A+ + F  +L++NP++A  ++  +I+ 
Sbjct: 232 LTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQAMAEKFTEFLLENPMDAKIVVGKIIDA 291

Query: 425 RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
                  R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR
Sbjct: 292 ARAREAARKAREMTRRKGAMDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNR 351

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTD 543
            NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  E LRY ++IIMTD
Sbjct: 352 KNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPEKLRYHRIIIMTD 411

Query: 544 ADVDGAHIASLL 555
           ADVDG+HI +LL
Sbjct: 412 ADVDGSHIRTLL 423


>gi|310780905|gb|ADP23928.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 376

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 142/388 (36%), Positives = 214/388 (55%), Gaps = 17/388 (4%)

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133
           LHHL  EV+DN++DE +AGY   I V++  +  +TV D+GRGIP + HPK   K  +E+ 
Sbjct: 1   LHHLVYEVVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVA 59

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           LT LHAGGKF+N  Y++SGGLHGVG+SVVNALS++L V V +   I+ Q + RG+P + L
Sbjct: 60  LTMLHAGGKFNNDAYKVSGGLHGVGVSVVNALSEKLEVIVKQHRKIYRQIYERGVPKTDL 119

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           E   +      T ITF+PD +IF +   FD   L +  +  A+L+  +      +++  E
Sbjct: 120 EVIGETEETG-TTITFKPDKEIFEETV-FDYDVLAQRLRELAFLNKGINIKLIDERDGKE 177

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
                  E F + GG+ ++++    N+ ++  E    + +        VE  + + +   
Sbjct: 178 -------EVFNYEGGIISFVKYLNRNKEVLHDEPIYMEAK---NTEYEVEVCMQYNDSYN 227

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
             I S+ N I T EGGTH  G + ALT+ I  YA           ++  +D+      I+
Sbjct: 228 ENIFSFANNIDTREGGTHLVGFKAALTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIV 287

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV ++ P+F GQTKTKL + + +  VEN + D    +L +NP  A  ++E   + +  R 
Sbjct: 288 SVKLKNPQFEGQTKTKLGNSEMRSIVENVVTDKLTAFLEENPSVAKIIVEKATQAARARE 347

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCS 457
             RK RE   RK+A+    LPGKLADCS
Sbjct: 348 AARKARELTRRKSALENTTLPGKLADCS 375


>gi|2267062|gb|AAB63496.1| gyrase B subunit [Pseudoalteromonas carrageenovora]
          Length = 423

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 164/432 (37%), Positives = 253/432 (58%), Gaps = 16/432 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L +TV R+  +  Q ++ G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKLTVRREGKLHEQFYTMGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL          GT + F P  + F +   F    L K  +  ++L+  V    S ++E
Sbjct: 61  APLAIIGD-SETTGTELRFWPSGETFTN-LDFHYDILAKRLRELSFLNSGVSIILSDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + + F + GG++ +++    N++ +   +F    E++     +VE ++ W +
Sbjct: 119 ------ENKSDHFKYEGGIQAFVEYLNRNKTPVHKGVFHFTHERE-EDGISVEVSMQWND 171

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYA----ELTQNKRAISIISDDLMIS 365
                I  + N I   +GGTH +G R ALTR +  Y        + K   +   DD    
Sbjct: 172 GFQENIYCFTNNIPQRDGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREG 231

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE- 424
              ++SV + +P+F+ QTK KLVS + +  VE A+ + F  +L++NP++A  ++  +I+ 
Sbjct: 232 LTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQAMAEKFTDFLLENPMDAKIVVGKIIDA 291

Query: 425 RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
                  R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR
Sbjct: 292 ARAREAARKAREMTRRKGAMDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNR 351

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTD 543
            NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  E LRY ++IIMTD
Sbjct: 352 KNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPEKLRYHRIIIMTD 411

Query: 544 ADVDGAHIASLL 555
           ADVDG+HI +LL
Sbjct: 412 ADVDGSHIRTLL 423


>gi|209863975|gb|ACI88905.1| GyrB [Leptospirillum ferriphilum]
          Length = 418

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 164/428 (38%), Positives = 241/428 (56%), Gaps = 13/428 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFDN+ Y++SGGLHGVG+SVVNALS+ L + + +   I  Q + +G P 
Sbjct: 1   EVIMTVLHAGGKFDNNLYKVSGGLHGVGVSVVNALSETLFLEIHQNGLIHRQTYHKGTPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    +   +RGT I F PD  I      F    L    +  A+L+  +      ++ 
Sbjct: 61  APLAVFGETT-QRGTIIRFWPDMTIMET-DQFSFDTLAHRFRELAFLNPVLTIHLKDEET 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
           + E       E F+F GG+++++    EN+  +   +F  KT + G+ +  V +      
Sbjct: 119 LRE-------ETFHFEGGVQSFVSFLNENKKTLHEVLFFRKTLEDGS-QFEVAFQYQEST 170

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
           EN  +  + N I T EGGTH  G R A+T+ I ++    Q  +   +  +D+     GI+
Sbjct: 171 ENETVLGFANNIHTREGGTHVRGFRTAITKTIDRFIREKQLNKGEEVRGEDVREGLTGII 230

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV I  P+F GQTK KL S      +E+ L +       ++P+ A K+ E  +  ++ R 
Sbjct: 231 SVRIPGPQFEGQTKAKLGSSWVAGAMESFLSEALQEKFEEDPLTAKKIAEKAVLTAQARE 290

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK ++   RK  +    LPGKLADC ++    +EL+IVEGDSAGGSAKQ R+R  QA+
Sbjct: 291 AARKAKDLAKRKNVLEGSNLPGKLADCQESDPAKSELYIVEGDSAGGSAKQGRDRRFQAI 350

Query: 490 LPLRGKILNVASAG-SEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVD 547
           LPL+GKILNV  +   EK   N ++  L+ A+GC    +   E+ LRY K+IIMTDADVD
Sbjct: 351 LPLKGKILNVEKSRGIEKFITNDEVRALITAVGCGLGEEEFSEKKLRYHKIIIMTDADVD 410

Query: 548 GAHIASLL 555
           G+HI +LL
Sbjct: 411 GSHIRTLL 418


>gi|2267080|gb|AAB63505.1| gyrase B subunit [Pseudoalteromonas peptidolytica]
          Length = 420

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 162/430 (37%), Positives = 253/430 (58%), Gaps = 15/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L +T+ R   +  QK++ G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLQLTIRRDGKLHQQKYTMGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    +     GT + F P  + F D   F    L K  +  ++L+  V    S ++E
Sbjct: 61  APLGIIGEA-ETTGTELRFWPSAETFSDTN-FHYDILAKRLRELSFLNSGVSIILSDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   +++ F + GG++ +++     ++ +   +F   TE++     +VE ++ W +
Sbjct: 119 ------ENKQDHFKYEGGIQAFVEYLNRKKTPVHQSVFHFSTERED--GISVEVSMQWND 170

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R ALTR +  Y E      K   +   DD      
Sbjct: 171 GFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNTYMEKEGFNKKHKTNATGDDAREGLT 230

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            ++SV + +P+F+ QTK KLVS + +  VE  + +    +L++NP +A  ++  +++ + 
Sbjct: 231 AVVSVKVPDPKFSSQTKDKLVSSEVKGAVEQMMAEKLTEFLLENPGDAKTVVNKIVDAAR 290

Query: 428 ERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK RE+ R+   +    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR N
Sbjct: 291 AREAARKAREMTRRKGVMDLAGLPGKLADCQERDPALSELYVVEGDSAGGSAKQGRNRKN 350

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC     +Y  E LRY ++IIM DAD
Sbjct: 351 QAILPLKGKILNVEKASFDKMLSSQEVATLITALGCGIGSDEYNPEKLRYHRIIIMNDAD 410

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 411 VDGSHIRTLL 420


>gi|49065929|gb|AAT49055.1| gyrase B [Capnocytophaga canimorsus]
 gi|49065933|gb|AAT49057.1| gyrase B [Capnocytophaga canimorsus]
          Length = 423

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 167/428 (39%), Positives = 238/428 (55%), Gaps = 20/428 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+S VNALS  L   V R   I+ Q++ RG  L P+++    +  RGT +
Sbjct: 1   YKVSGGLHGVGVSCVNALSSHLTAVVYRDGKIWQQEYERGKVLYPVKQVGDTQK-RGTTV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
           TF+PD  IF     +    L    +  A+L+  +    +  +E  E+ G  + E FY   
Sbjct: 60  TFQPDDLIFQQTLEYKYDTLATRMRELAFLNRGITITLTDKRER-EENGEFKSETFYSEN 118

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDE 326
           GLK +++    NR  I S +   + EK       VE A+ + +   E    Y N I T E
Sbjct: 119 GLKEFIRYLDGNRPAIISNVIAMEGEKNEIP---VEVAMVYNDSYSENLHSYVNNINTHE 175

Query: 327 GGTHESGLRVALTRGIKKY--------AELTQNKRAISIISDDLMISAVGILSVFIREPE 378
           GGTH  G R  LTR +KKY              K  + I  +D       I+SV + EP+
Sbjct: 176 GGTHLEGFRRGLTRTLKKYADSSGLLEKMSKDKKNPVQISGEDFREGLTAIVSVKVAEPQ 235

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE- 437
           F GQTKTKL + +    V  A+ +  + YL ++P +A  ++E VI  ++ R   RK RE 
Sbjct: 236 FEGQTKTKLGNSEVLAVVSQAVSEMLEAYLEEHPNDAKVIVEKVIIAAQARHAARKAREL 295

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
           V RKT +    LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPL+GKIL
Sbjct: 296 VQRKTVMSGGGLPGKLSDCSEQNPELCEIFLVEGDSAGGTAKQGRDRNFQAILPLKGKIL 355

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIA 552
           NV  A   K+ ++++I ++  ALG    ++        E LRY KV+IM DADVDG+HI 
Sbjct: 356 NVEKAMHHKVFDSEEIKNIFTALGVTIGTEDDAKALNLEKLRYHKVVIMCDADVDGSHIT 415

Query: 553 SLLLTFFY 560
           +L+LTFF+
Sbjct: 416 TLILTFFF 423


>gi|2267072|gb|AAB63501.1| gyrase B subunit [Pseudoalteromonas nigrifaciens]
          Length = 423

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 163/432 (37%), Positives = 252/432 (58%), Gaps = 16/432 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L +T+ R+  +  Q +S G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKLTIRREGKLHEQTYSHGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL       +  GT + F P  + F +   F    L K  +  ++L+  V    + ++E
Sbjct: 61  APLALIGDA-DTTGTELRFWPSDQTFTN-LDFHYDILAKRLRELSFLNSGVSIILNDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + + F + GG++ +++    N++ I   +F     ++      VE ++ W +
Sbjct: 119 ------ENKSDHFKYEGGIRAFVEYLNRNKTPIHKGVFHFTHTRE-EDGIVVEVSMQWND 171

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYA----ELTQNKRAISIISDDLMIS 365
                I  + N I   +GGTH +G R ALTR +  Y        + K   +   DD    
Sbjct: 172 AYQENIYCFTNNIPQRDGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREG 231

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              ++SV + +P+F+ QTK KLVS + +  VE A+ + F  +L+++P +A  ++  +I+ 
Sbjct: 232 LTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQAMAEKFTEFLLEHPTDAKIVVGKIIDA 291

Query: 426 S-EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           S      R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR
Sbjct: 292 SRAREAARKAREMTRRKGAMDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNR 351

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTD 543
            NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  E LRY ++IIMTD
Sbjct: 352 KNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPEKLRYHRIIIMTD 411

Query: 544 ADVDGAHIASLL 555
           ADVDG+HI +LL
Sbjct: 412 ADVDGSHIRTLL 423


>gi|88824769|gb|ABD52430.1| gyrase B [Proteus mirabilis]
          Length = 414

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 163/425 (38%), Positives = 242/425 (56%), Gaps = 16/425 (3%)

Query: 136 TLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK 195
            LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L +T+ R   I  Q +  G+P   L+ 
Sbjct: 1   VLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELTIHRDGKIHQQIYRSGVPDDRLKV 60

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
             +  +K GT + F P    F  +  F    L K  +  ++L+  V       ++  E  
Sbjct: 61  IGET-DKSGTFVRFWPSLDTFKGETEFQYDILAKRLRELSFLNSGVSIRLIDKRDNRE-- 117

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PE 314
                + F++ GG+K +++    N++ I   +F   TEK G     VE A+ W +     
Sbjct: 118 -----DHFHYEGGIKAFVEYLSRNKTPIHQNVFYFSTEKDGI---GVEVAMLWNDGFQEN 169

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSV 372
           +  + N I   +GGTH  G R A+TR +  Y +      K  IS   DD     + ++SV
Sbjct: 170 VYCFTNNIPQRDGGTHLVGFRTAMTRTLNNYMDKEGFNKKSKISATGDDAREGLIAVISV 229

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLR 431
            + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+        
Sbjct: 230 KVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAA 289

Query: 432 RRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           R+ +    RK A+    LPGKLADCS+     +EL++VEGDSAGGSAKQ RNR  QA+LP
Sbjct: 290 RKAREMTRRKGALDLGGLPGKLADCSERDPAFSELYLVEGDSAGGSAKQGRNRKTQAILP 349

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAH 550
           L+GKILNV  A  +K+  +Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+H
Sbjct: 350 LKGKILNVEKARFDKMLASQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSH 409

Query: 551 IASLL 555
           I +LL
Sbjct: 410 IRTLL 414


>gi|2267058|gb|AAB63494.1| gyrase B subunit [Pseudoalteromonas atlantica]
          Length = 423

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 164/432 (37%), Positives = 253/432 (58%), Gaps = 16/432 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L +T+ R+  +  Q +S G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLTLTIRREGKLHEQTYSMGVPN 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL       +  GT + F P  + F +   F    L K  +  ++L+  V    S ++E
Sbjct: 61  APLTVIGDA-DTTGTELRFWPSGETFTN-LDFHYDILAKRLRELSFLNSGVSIILSDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + + F + GG++ +++    N++ +   +F    E++     +VE ++ W +
Sbjct: 119 ------ENKTDHFKYDGGIQAFVEYLNRNKTPVHKGVFHFTHEREEE-GISVEVSMQWND 171

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYA----ELTQNKRAISIISDDLMIS 365
                I  + N I   +GGTH +G R ALTR +  Y        + K   +   DD    
Sbjct: 172 GFQENIYCFTNNIPQRDGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREG 231

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE- 424
              ++SV + +P+F+ QTK KLVS + +  VE A+ + F  +L++NP++A  ++  +I+ 
Sbjct: 232 LTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQAMAEKFSDFLLENPMDAKIVVGKIIDA 291

Query: 425 RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
                  R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR
Sbjct: 292 ARAREAARKAREMTRRKGAMDLAGLPGKLADCQEKDPSLSELYIVEGDSAGGSAKQGRNR 351

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTD 543
            NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  E LRY  +IIMTD
Sbjct: 352 KNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYDPEKLRYHSIIIMTD 411

Query: 544 ADVDGAHIASLL 555
           ADVDG+HI +LL
Sbjct: 412 ADVDGSHIRTLL 423


>gi|225419992|ref|ZP_03762295.1| hypothetical protein CLOSTASPAR_06333 [Clostridium asparagiforme
           DSM 15981]
 gi|225041384|gb|EEG51630.1| hypothetical protein CLOSTASPAR_06333 [Clostridium asparagiforme
           DSM 15981]
          Length = 422

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 129/426 (30%), Positives = 188/426 (44%), Gaps = 77/426 (18%)

Query: 24  KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVID 83
           +        P        + Y A  I+ILEGLE VR RP MYIG T    LHHL  E++D
Sbjct: 2   RPEEPSVSQPEAVGTMVKNEYRAEQIQILEGLEAVRKRPAMYIGNTSSAGLHHLVCEIVD 61

Query: 84  NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143
           NA+DE +AG+ + + V+L+ +G +T+ DNGRGIPV    K    S L+++ T LHAGGKF
Sbjct: 62  NAVDEALAGHCSAVSVTLNRDGSVTITDNGRGIPVGIQKK-TGLSALQVVFTVLHAGGKF 120

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK- 202
           D+S Y++SGGLHGVG SVVNALS  L V V R    + Q +SRG+P   + K+E VR   
Sbjct: 121 DSSNYKVSGGLHGVGASVVNALSLWLRVEVRRDGGTWKQSYSRGVPDGAVTKEEAVRGCA 180

Query: 203 ------------------------------------------RGTRITFRPDPKIFGDKA 220
                                                      GT +TF PDP+IF D  
Sbjct: 181 TGPLARQDDPIPLTRQDDPVPSARNEAPFSPARQGALDTVSVSGTTVTFLPDPEIFRDPV 240

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI----------------------- 257
            F    L K  +  A+L+  +    +  +   +                           
Sbjct: 241 -FQYEVLKKRMRETAFLTKGLSLTLTDLRADCKHGSNTAATPDATTADAPKSPESSNLPQ 299

Query: 258 ---PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE 314
              P ++ F    GL+ ++     + S + SEI  G  +        VE+AI       +
Sbjct: 300 PTLPRQDHFLCEKGLEDFVNWLNRDASPLYSEIICGGADSGDIQ---VEFAIQHTAGYDQ 356

Query: 315 ITS-YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILS 371
               + N I T EGG+H +G   AL R +   A   +  +  +     ++L      ++S
Sbjct: 357 RLYSFVNNISTPEGGSHVTGFHSALVRALNHCARNLKLLKESAPPLCREELTEGLTAVIS 416

Query: 372 VFIREP 377
           V +++P
Sbjct: 417 VRMQDP 422


>gi|23978255|dbj|BAC21118.1| DNA gyrase B subunit [Oscillatoria sp. PCC 7112]
          Length = 396

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 135/396 (34%), Positives = 205/396 (51%), Gaps = 5/396 (1%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T  + LHHL  EV+DN++DE +AG+   IE+ L+ +G +TV D+GRGIP     K   KS
Sbjct: 1   TGPRGLHHLVYEVVDNSIDEALAGHCTHIEIDLNADGSVTVTDDGRGIPTGIVAK-TGKS 59

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
            +E ++T LHAGGKF    Y++SGGLHGVGISVVNALS+ + VTV        Q++ RG 
Sbjct: 60  GIETVMTVLHAGGKFGGGGYKVSGGLHGVGISVVNALSEWVEVTVWLDQKEHLQRYERGN 119

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
           P++ L+ K     + GT ++F PD +IF     FD   L    +   YL+  V+  +S  
Sbjct: 120 PVTELKVKPNKGTRTGTSVSFLPDTQIFTTGIEFDYTTLAGRLRELGYLNAGVRITFSDH 179

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +    K   P  E + + GG+K Y+       S +  E+   + E+    +  V      
Sbjct: 180 RLALLKSSEPYIETYCYEGGIKEYIAYMTAKNSPLHDEVIYVQGERNNV-QIEVALQWCV 238

Query: 309 CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISA 366
              +  +  + N I T +GGTH  GL+  LTR +   A      +    ++  +++    
Sbjct: 239 DAFSDNVLGFANNIRTIDGGTHLEGLKAVLTRTMNSIARKRNKIKENEPNLAGENVREGL 298

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             ++SV + +PEF GQTKTKL + + +  V++ + +    YL   P  A  +LE  I+  
Sbjct: 299 TAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFRPQVADAILEKAIQAF 358

Query: 427 E-ERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIA 461
           +     RR +  V RK+ +    LPGKLADCS    
Sbjct: 359 KAAEAARRARDLVRRKSVLESSPLPGKLADCSSRDP 394


>gi|88824779|gb|ABD52435.1| gyrase B [Serratia marcescens]
          Length = 419

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 159/425 (37%), Positives = 240/425 (56%), Gaps = 16/425 (3%)

Query: 136 TLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK 195
            LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L + + R+  +  Q +S G P +PL  
Sbjct: 6   VLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYSHGEPQAPLNV 65

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
             +   + GT + F P  + F +   F+   L K  +  ++L+  V       +   E  
Sbjct: 66  VGET-EQTGTMVRFWPSHQTFTNVTEFEYDILAKRLRELSFLNSGVSIRLKDKRTDRE-- 122

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PE 314
                + F++ GG+K +++   +N++ I   +F   T K       VE A+ W +     
Sbjct: 123 -----DHFHYEGGIKAFVEYLNKNKTPIHPNVFYFSTVKDDI---GVEVALQWNDGFQEN 174

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSV 372
           I  + N I   +GGTH  G R A+TR +  Y E      K  +S   DD     + ++SV
Sbjct: 175 IYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMEKEGYSKKAKVSATGDDAREGLIAVVSV 234

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLR 431
            + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+        
Sbjct: 235 KVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVDYLMENPGDAKIVVGKIIDAARAREAA 294

Query: 432 RRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           R+ +    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LP
Sbjct: 295 RKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILP 354

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAH 550
           L+GKILNV  A  +K+ ++Q++  L+ ALGC         + LRY  +IIMTDADVDG+H
Sbjct: 355 LKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYSPDKLRYHSIIIMTDADVDGSH 414

Query: 551 IASLL 555
           I +LL
Sbjct: 415 IRTLL 419


>gi|148971417|gb|ABR20246.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 419

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 164/430 (38%), Positives = 248/430 (57%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L +TV R   I+ Q +  G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+    +     GT I F+P  + F +   F    L K  +  ++L+  V      ++ 
Sbjct: 61  APMAVVGE-SETTGTHIHFKPSAETFKNIH-FSWDILAKRIRELSFLNSGVGILLKDERS 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       E F + GGL+ +++    N++ ++S++F    ++       VE A+ W +
Sbjct: 119 GKE-------EFFKYEGGLRAFVEYLNTNKTPVNSQVFHFNIQRDD--GVGVEVALQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                +  + N I   +GGTH  G R +LTR +  Y E      K  ++   DD      
Sbjct: 170 SFNENLLCFTNNIPQRDGGTHLVGFRSSLTRSLNNYIEQEGLAKKNKVATTGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            I+SV + +P+F+ QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+   
Sbjct: 230 AIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNKYFADFLLENPNEAKAVVGKMIDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  
Sbjct: 290 AREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRT 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGREEYNIDKLRYHNIIIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHIRTLL 419


>gi|148470213|gb|ABQ66054.1| gyrase b [uncultured bacterium]
          Length = 421

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 163/430 (37%), Positives = 248/430 (57%), Gaps = 14/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD   Y++SGGLHGVG SVVNALS+   V V R   I++ +F RGI  
Sbjct: 1   EVIMTVLHAGGKFDGGGYKVSGGLHGVGASVVNALSEWTSVEVCRDGKIYNMEFERGIKT 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
             ++   K R K GT++TF+PDP+IF +   FD  R++   +  AYL+  +      ++ 
Sbjct: 61  GEIKVIGK-RQKSGTKVTFKPDPQIFPEVV-FDYDRIVARCRELAYLNESLAFYLEDERS 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGK-TEKKGTHRGTVEWAIAWC 309
                   EK+EF +  G+  +++   E + +I S++   +  E+   +  +V+ A+ + 
Sbjct: 119 -------GEKDEFKYTKGIIQFVKQLNEGKDVIHSQVVYLERAEQGKENPMSVQVAVQYN 171

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISA 366
           +     + S+ N I T  GGTH SG + ALTR +  YA+     +        DDL    
Sbjct: 172 DGYAESLHSFANNINTPGGGTHLSGFKTALTRTLNFYAKSNNLIKDEKEMPNGDDLREGL 231

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             I+SV +  P+F GQTK KL + + +  V +A+ +    +L ++P +A ++++  I   
Sbjct: 232 SAIVSVKVPNPQFEGQTKDKLGNGEVEGFVSSAVNEALGIWLEEHPGDAKRIIQKGILAR 291

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
           + R   RK RE++ +  I    LPGKL+DCS      TEL+IVEG SAGG+AK  R+R  
Sbjct: 292 QAREAARKAREIDTQRGIDSGGLPGKLSDCSSRDMESTELYIVEGQSAGGTAKAGRDRVF 351

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDAD 545
           QA+LP++GKILNV  A  +K+  +++I  +VQAL C   +   +   LRY K+ I TDAD
Sbjct: 352 QAILPIKGKILNVEKARVDKMLGHEEIRTIVQALACGIGANDMDRTKLRYGKLAITTDAD 411

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 412 VDGSHIRTLL 421


>gi|4894892|gb|AAD32644.1|AF136384_1 gyrase B [Photobacterium damselae subsp. damselae]
          Length = 419

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 164/429 (38%), Positives = 252/429 (58%), Gaps = 15/429 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I  Q +  G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIYRHGHIHRQIYRHGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PLE      ++ GT I F P  + F +   F    L K  +  ++L+  V    + ++E
Sbjct: 61  APLEVIGDT-DRTGTTIRFWPSSETFTN-TTFQYEILAKRLRELSFLNSGVSIKLNDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   +++ F + GG++ +++    N++ I  ++F    E++     TVE A+ W +
Sbjct: 119 ------EGKQDHFMYEGGIQAFVEHLNRNKTPIHQKVFHFNVERED--GITVEVAMQWND 170

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R ALTR +  Y E      K   +   DD      
Sbjct: 171 GFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMEKESYSKKAKAATSGDDAREGLT 230

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS- 426
            ++SV + +P+F+ QTK KLVS + +  VE+ + +    +L++NP +A  +   +I+ S 
Sbjct: 231 AVISVKVPDPKFSSQTKDKLVSSEVKSAVESTMGEKLGEFLLENPGDAKTVCTKIIDASR 290

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR N
Sbjct: 291 AREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKN 350

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDAD
Sbjct: 351 QAILPLKGKILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHSIIIMTDAD 410

Query: 546 VDGAHIASL 554
           VDG+HI +L
Sbjct: 411 VDGSHIRTL 419


>gi|148971317|gb|ABR20196.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 164/428 (38%), Positives = 240/428 (56%), Gaps = 13/428 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFDN+ Y++SGGLHGVG+SVVNALS+ L + + +   I  Q + +G P 
Sbjct: 1   EVIMTVLHAGGKFDNNLYKVSGGLHGVGVSVVNALSETLFLEIHQNGLIHRQTYHKGAPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    +    RGT I F PD  I      F    L    +  A+L+  +      ++ 
Sbjct: 61  APLAVFGETAK-RGTIIRFWPDMTIMET-DQFSFDTLSHRFRELAFLNPVLTIHLKEEET 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
           + E       E F+F GG+++++    EN+  +   +F  KT + G+ +  V +      
Sbjct: 119 LRE-------ETFHFEGGVQSFVSFLNENKKTLHDVLFFRKTLEDGS-QFEVAFQYQEST 170

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
           EN  +  + N I T EGGTH  G R A+T+ I ++    Q  +   +  +D+     GI+
Sbjct: 171 ENETVLGFANNIHTREGGTHVRGFRTAITKTINRFIREKQLNKGEEVRGEDVREGLTGII 230

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV I  P+F GQTK KL S      +E+ L +       ++P+ A K+ E  +  ++ R 
Sbjct: 231 SVRIPGPQFEGQTKAKLGSSWVAGAMESFLSEALQEKFEEDPLTAKKIAEKAVLTAQARE 290

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK ++   RK  +    LPGKLADC ++    +EL+IVEGDSAGGSAKQ R+R  QA+
Sbjct: 291 AARKAKDLAKRKNVLEGSNLPGKLADCQESDPAKSELYIVEGDSAGGSAKQGRDRRFQAI 350

Query: 490 LPLRGKILNVASAG-SEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVD 547
           LPL+GKILNV  +   EK   N ++  L+ A+GC    +   E+ LRY K+IIMTDADVD
Sbjct: 351 LPLKGKILNVEKSRGIEKFITNDEVRALITAVGCGLGEEEFSEKKLRYHKIIIMTDADVD 410

Query: 548 GAHIASLL 555
           G+HI +LL
Sbjct: 411 GSHIRTLL 418


>gi|68138733|gb|AAY86007.1| GyrB [Burkholderia cenocepacia]
          Length = 618

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 157/453 (34%), Positives = 239/453 (52%), Gaps = 29/453 (6%)

Query: 173 VARQNTIFSQKFSRGIP------------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           V R       +F RG+             +SP+       N RGT + F  DP IFG   
Sbjct: 1   VRRDGKKRFMEFHRGVAQDRVLEVVDGVEVSPMLVTGDTEN-RGTEVHFMADPTIFGTV- 58

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +    L K  +  ++L+  V+   +  +   E         F F GG+K +++   + +
Sbjct: 59  EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD-------FAFAGGVKGFVEYINKTK 111

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + +   +F    EK G     VE A+ W +     +  + N I   +GGTH +GLR A+T
Sbjct: 112 TNLHPTVFFANGEKDGV---GVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMT 168

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I KY    +   K  +    DD+      +LSV + EP+F+ QTK KLVS + +  VE
Sbjct: 169 RVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVE 228

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADC 456
             +    + +L++ PI+A  +   ++E +  R   RK RE+ R+   +  + LPGKLADC
Sbjct: 229 EVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVGLPGKLADC 288

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+LNV  A  +K+ +++QI+ L
Sbjct: 289 QEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTL 348

Query: 517 VQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           V ALGC    +    + LRY ++IIMTDADVDGAHI +LLLTF Y++M D+IE+ ++++ 
Sbjct: 349 VTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFLYRQMPDMIERGYVYIA 408

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
            PPL++I  G    +  D+      +      G
Sbjct: 409 QPPLYKIKAGKDERHLKDDVELNAHMLRLALQG 441


>gi|148470234|gb|ABQ66064.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 160/430 (37%), Positives = 240/430 (55%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALSD L + + R+  +   +F RG+P 
Sbjct: 1   EVIMTVLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLKLKIYRKGKVHQMEFHRGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL       +K GT + F      F     +    L K  +  ++L+  VK      + 
Sbjct: 61  APLAVTG-TTDKTGTEVHFLASVDTFVL-VEYHFEILAKRIRELSFLNNGVKIELIDQR- 117

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + E F F GG+K +++     ++++  ++F    EK      TVE A+ W +
Sbjct: 118 ------TGKSENFAFSGGVKGFVEYMNRTKTVLHPKVFYAIGEKDNI---TVEVAMQWND 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                +  + N I   +GGT  +GLR A+TR + +Y E  +   K  +    DD+     
Sbjct: 169 SYSETVQCFTNNIPQRDGGTQLTGLRTAMTRTLNQYIEQNEFAKKAKVETTGDDMREGIT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + Q  V   +      +L +NP +A  +   ++E + 
Sbjct: 229 CVLSVKVPDPKFSSQTKDKLVSSEVQPVVSEIVAAKLAEFLEENPNDAKIVCGKIVEAAR 288

Query: 428 ERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK RE+ R+   +  + LPGKLADC +     +EL++VEGDSAGGSAKQ R+R  
Sbjct: 289 AREAARKAREITRRKGVMDTMGLPGKLADCQEKDPAMSELYLVEGDSAGGSAKQGRDRKF 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+  + +I  L+ A+G          E LRY ++IIMTDAD
Sbjct: 349 QAILPLKGKILNVEKARFDKLLGSAEIATLITAMGTGIGKDDFNLEKLRYHRIIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|148470180|gb|ABQ66038.1| gyrase b [uncultured bacterium]
 gi|148971281|gb|ABR20178.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  267 bits (682), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 163/428 (38%), Positives = 241/428 (56%), Gaps = 13/428 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFDN+ Y++SGGLHGVG+SVVNAL++ L + + +   I  Q + +G P 
Sbjct: 1   EVIMTVLHAGGKFDNNLYKVSGGLHGVGVSVVNALTETLFLEIHQNGLIHRQTYHKGTPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    +   +RGT I F PD  I      F    L    +  A+L+  +      ++ 
Sbjct: 61  APLAVFGETT-QRGTIIRFWPDMTIMET-DQFSFDTLAHRFRELAFLNPVLTIHLKDEET 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
           + E       E F+F GG+++++    EN+  +   +F  KT + G+ +  V +      
Sbjct: 119 LRE-------ETFHFEGGVQSFVSFLNENKKTLHDVLFFRKTLEDGS-QFEVAFQYQEST 170

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
           EN  +  + N I T EGGTH  G R A+T+ I ++    Q  +   +  +D+     GI+
Sbjct: 171 ENETVLGFANNIHTREGGTHVRGFRTAITKTINRFIREKQLNKGEEVRGEDVREGLTGII 230

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV I  P+F GQTK KL S      +E+ L +       ++P+ A K+ E  +  ++ R 
Sbjct: 231 SVRIPGPQFEGQTKAKLGSSWVAGAMESFLSEALQEKFEEDPLTAKKIAEKAVLTAQARE 290

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK ++   RK  +    LPGKLADC ++    +EL+IVEGDSAGGSAKQ R+R  QA+
Sbjct: 291 AARKAKDLAKRKNVLEGSNLPGKLADCQESDPAKSELYIVEGDSAGGSAKQGRDRRFQAI 350

Query: 490 LPLRGKILNVASAG-SEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVD 547
           LPL+GKILNV  +   EK   N ++  L+ A+GC    +   E+ LRY K+IIMTDADVD
Sbjct: 351 LPLKGKILNVEKSRGIEKFITNDEVRALITAVGCGLGEEEFSEKKLRYHKIIIMTDADVD 410

Query: 548 GAHIASLL 555
           G+HI +LL
Sbjct: 411 GSHIRTLL 418


>gi|257168326|gb|ACV40299.1| DNA gyrase subunit B [Yersinia intermedia]
          Length = 279

 Score =  267 bits (681), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 94/288 (32%), Positives = 156/288 (54%), Gaps = 13/288 (4%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
           D   LHH+  EV+DNA+DE +AG+   I V++  +  ++V D+GRGIP   H +    S 
Sbjct: 3   DGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHSDNSVSVQDDGRGIPTGMHEE-EGVSA 61

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L + + R+  +  Q +  G+P
Sbjct: 62  AEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVP 121

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            +PL+   +  ++ GT + F P  + F +   F    L K  +  ++L+  V       +
Sbjct: 122 QAPLKVVGET-DQTGTTVRFWPSFQTFTNNIEFQYEILAKRLRELSFLNSGVSIKLKDKR 180

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
              E       + F++ GG++ +++   +N++ I  ++F   T K       VE A+ W 
Sbjct: 181 NDRE-------DHFHYEGGIRAFVEYLNKNKTPIHPKVFYFSTMKDDI---GVEVALQWN 230

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
           +     I  + N I   +GGTH  G R A+TR +  Y +     +   
Sbjct: 231 DGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAK 278


>gi|86740466|ref|YP_480866.1| DNA topoisomerase II [Frankia sp. CcI3]
 gi|86567328|gb|ABD11137.1| DNA topoisomerase II [Frankia sp. CcI3]
          Length = 658

 Score =  267 bits (681), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 130/407 (31%), Positives = 199/407 (48%), Gaps = 17/407 (4%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y A SI +  GL  VR  P MYIG T  + LHHL  E+IDNA+DE   G   LIEV L 
Sbjct: 13  EYTARSIVLFSGLTAVRRNPSMYIGSTGTEGLHHLVFELIDNAVDEFAVGTCGLIEVVLH 72

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G  +V D+GRGIPV+ HP       L++++TTLH+GGKF   TY  S GLHGVG+S V
Sbjct: 73  ADGSCSVSDDGRGIPVDEHPDL-RVPALQVVMTTLHSGGKFQGDTYRRSAGLHGVGLSCV 131

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+ L V V R   +++Q + RG P + ++      ++ GT + FRPD  IF   A F
Sbjct: 132 NALSEWLRVEVHRDGGMYTQSYGRGEPTTTVDMVG-TSDRHGTLVRFRPDMMIFDA-AAF 189

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L       A+L   +      ++   E       E F +  G+K +L  +  +  +
Sbjct: 190 VTGVLAARMAELAFLHPGLVLRLVDERTDTE-------ETFDYVEGVKGFLTQRNRDAEV 242

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +  E      E+       ++ A+ W E    E++S+ N + TD+GG H   LR  L   
Sbjct: 243 VHPEPIIITAER---SDLVLDVALQWTEGYAEEMSSFVNAVRTDQGGAHVDALRTGLASA 299

Query: 342 IKKYAELTQNKRAI---SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
           I  +A + +   +     I ++D++     ++S+ +  P F GQTK +L S +    V  
Sbjct: 300 INDHASMNRMLDSFAGERITTNDILEGLTAVVSLRMDSPRFDGQTKRRLQSPEVGPFVRR 359

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIR 445
           A+ +     L + P    +++   ++ +  RL  R      R    +
Sbjct: 360 AVAETVAATLRREPGLGARVVARALDATRARLAARLAGRAVRYQRRK 406


>gi|257168238|gb|ACV40252.1| DNA gyrase subunit B [Yersinia massiliensis]
          Length = 279

 Score =  267 bits (681), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 95/288 (32%), Positives = 156/288 (54%), Gaps = 13/288 (4%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
           D   LHH+  EV+DNA+DE +AG+   I V++  +  ++V D+GRGIP   H +    S 
Sbjct: 3   DGTGLHHMVFEVVDNAIDEALAGHCKEIVVTIHSDNSVSVQDDGRGIPTGMHDE-EGISA 61

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L + + R+  +  Q +  G+P
Sbjct: 62  AEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYRMGVP 121

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            +PL+   +  ++ GT + F P  + F +   F    L K  +  ++L+  V       +
Sbjct: 122 QAPLKVVGET-DQTGTTVRFWPSFETFTNNTEFQYEILAKRLRELSFLNSGVSIKLRDKR 180

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
              E       + F++ GG+K +++   +N++ I  ++F   T K       VE A+ W 
Sbjct: 181 NDRE-------DHFHYEGGIKAFVEYLNKNKTPIHPKVFYFSTVKDDI---GVEVALQWN 230

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
           +     I  + N I   +GGTH  G R A+TR +  Y +     +   
Sbjct: 231 DGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAK 278


>gi|257168292|gb|ACV40280.1| DNA gyrase subunit B [Yersinia intermedia]
          Length = 279

 Score =  267 bits (681), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 94/288 (32%), Positives = 154/288 (53%), Gaps = 13/288 (4%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
           D   LHH+  EV+DNA+DE +AG+   I V++  +  ++V D+GRGIP   H +    S 
Sbjct: 3   DGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHSDNSVSVQDDGRGIPTGMHEE-EGVSA 61

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L + + R   +  Q +  G+P
Sbjct: 62  AEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYKMGVP 121

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            +PL+   +  +  GT + F P  + F +   F    L K  +  ++L+  V       +
Sbjct: 122 QAPLKMVGET-DLTGTTVRFWPSFQTFTNNIEFQYEILAKRLRELSFLNSGVSIKLKDKR 180

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
              E       + F++ GG++ +++   +N++ I  ++F   T K       VE A+ W 
Sbjct: 181 NDRE-------DHFHYEGGIRAFVEYLSKNKTPIHPKVFYFSTMKDDI---GVEVALQWN 230

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
           +     I  + N I   +GGTH  G R A+TR +  Y +     +   
Sbjct: 231 DGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAK 278


>gi|257168210|gb|ACV40238.1| DNA gyrase subunit B [Yersinia bercovieri]
 gi|257168268|gb|ACV40267.1| DNA gyrase subunit B [Yersinia mollaretii]
 gi|257168272|gb|ACV40269.1| DNA gyrase subunit B [Yersinia mollaretii]
 gi|257168274|gb|ACV40271.1| DNA gyrase subunit B [Yersinia mollaretii]
 gi|257168276|gb|ACV40272.1| DNA gyrase subunit B [Yersinia mollaretii]
          Length = 279

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 95/288 (32%), Positives = 155/288 (53%), Gaps = 13/288 (4%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
           D   LHH+  EV+DNA+DE +AG+   I V++  +  ++V D+GRGIP   H +    S 
Sbjct: 3   DGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHSDNSVSVQDDGRGIPTGLHEE-EGVSA 61

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L + + R+  +  Q +  G+P
Sbjct: 62  AEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVP 121

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            +PL+   +  +  GT + F P  + F +   F    L K  +  ++L+  V       +
Sbjct: 122 QAPLKVVGET-DLTGTTVRFWPSFETFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDKR 180

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
              E       + F++ GG+K +++   +N++ I  ++F   T K       VE A+ W 
Sbjct: 181 NDRE-------DHFHYEGGIKAFVEYLSKNKNPIHPKVFYFSTVKDDI---GVEVALQWN 230

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
           +     I  + N I   +GGTH  G R A+TR +  Y +     +   
Sbjct: 231 DGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAK 278


>gi|148971319|gb|ABR20197.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 163/428 (38%), Positives = 241/428 (56%), Gaps = 13/428 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFDN+ Y++SGGLHGVG+SVVNALS+ L + + +   I  + + +G P 
Sbjct: 1   EVIMTVLHAGGKFDNNLYKVSGGLHGVGVSVVNALSETLFLEIHQNGLIHRRTYHKGAPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    +   +RGT I F PD  I      F    L    +  A+L+  +      ++ 
Sbjct: 61  APLAVFGETA-QRGTIIRFWPDMTIMET-DQFSFDTLSHRFRELAFLNPVLTIHLKEEET 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
           + E       E F+F GG+++++    EN+  +   +F  KT + G+ +  V +      
Sbjct: 119 LRE-------ETFHFEGGVQSFVSFLNENKKTLHDVLFFRKTLEDGS-QFEVAFQYQEST 170

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
           EN  +  + N I T EGGTH  G R A+T+ I ++    Q  +   +  +D+     GI+
Sbjct: 171 ENETVLGFANNIHTREGGTHVRGFRTAITKTINRFIREKQLNKGEEVRGEDVREGLTGII 230

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV I  P+F GQTK KL S      +E+ L +       ++P+ A K+ E  +  ++ R 
Sbjct: 231 SVRIPGPQFEGQTKAKLGSSWVAGAMESFLSEALQEKFEEDPLTAKKIAEKAVLTAQARE 290

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK ++   RK  +    LPGKLADC ++    +EL+IVEGDSAGGSAKQ R+R  QA+
Sbjct: 291 AARKAKDLAKRKNVLEGSNLPGKLADCQESDPAKSELYIVEGDSAGGSAKQGRDRRFQAI 350

Query: 490 LPLRGKILNVASAG-SEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVD 547
           LPL+GKILNV  +   EK   N ++  L+ A+GC    +   E+ LRY K+IIMTDADVD
Sbjct: 351 LPLKGKILNVEKSRGIEKFITNDEVRALITAVGCGLGEEEFSEKKLRYHKIIIMTDADVD 410

Query: 548 GAHIASLL 555
           G+HI +LL
Sbjct: 411 GSHIRTLL 418


>gi|148762369|dbj|BAF63886.1| DNA topoisomerase IV subunit B [Halobacillus litoralis]
          Length = 407

 Score =  266 bits (680), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 139/414 (33%), Positives = 211/414 (50%), Gaps = 19/414 (4%)

Query: 73  ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132
            LHHL  E++DNA+DE ++G+   +  +L  +G ++V D  RG+P   H     K T E+
Sbjct: 6   GLHHLVHEIVDNAIDEALSGFGEKMTATLHKDGSVSVQDEARGMPTGMHK--TGKPTPEV 63

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
           ILT LHAGGKF    Y+ SGGLHGVG SVVNALS+ L V + R    F Q+F  G     
Sbjct: 64  ILTVLHAGGKFGQGGYKSSGGLHGVGASVVNALSEWLEVHICRDGEKFYQRFENGGVPVT 123

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
             + +    K GT I F+PDP IF     F+   L +  +  A+L    +     +++  
Sbjct: 124 SLENKGATRKTGTTIRFKPDPSIF-SMTKFNFETLSERLREAAFLLKGFRIILVDERK-- 180

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
                  +EE+ +  GL ++++   E +  + S +    +          ++   + E  
Sbjct: 181 ----ETVREEYQYDDGLVSFVEYLNEEKDTLHSVVSFEGSHSGIEADFAFQFNDGFAE-- 234

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
             I S+ N + T +GGTHESG + A+TR    YA   Q    +  ++  +D+      ++
Sbjct: 235 -NILSFVNNVRTKDGGTHESGAKTAITRVFNDYARRAQLLKDKDKNLEGNDIREGFTAVI 293

Query: 371 SVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           SV I E   +F GQTK+KL + +A+  V+  + +   ++L +NP  A+ L++  I+  E 
Sbjct: 294 SVRIPEELLQFEGQTKSKLGTSEARSAVDGIVAEQLSYFLEENPDVASMLIKKAIKAKEA 353

Query: 429 RLRRRKQREVNRKTAIRK---LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           R   RK RE  R    +K     L GKL       A   EL++VEGDSAGGSAK
Sbjct: 354 REAARKAREDARSGKKKKRKDTLLSGKLTPAQSKNAKKNELYLVEGDSAGGSAK 407


>gi|209863971|gb|ACI88903.1| GyrB [Leptospirillum ferriphilum]
          Length = 419

 Score =  266 bits (680), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 161/428 (37%), Positives = 237/428 (55%), Gaps = 12/428 (2%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFDNS Y++SGGLHGVG+SVVNALS+ L + + +   +  Q + +G P 
Sbjct: 1   EVIMTVLHAGGKFDNSLYKVSGGLHGVGVSVVNALSETLQLEIHQNGLVHRQTYHKGTPE 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    + ++ RGT I F PD  I      F    L    +  A+L+  +      ++ 
Sbjct: 61  APLAVVGETQS-RGTTIRFWPDMTIMETD-QFSFETLAHRFRELAFLNPVMTIHLKEEET 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
           + E       E F+F GG+++++    EN+ ++   +F  K  + G       +      
Sbjct: 119 LRE-------EAFHFEGGIQSFVAFLNENKKILHDVLFFRKQLEDGAQFEVAFFQYQEST 171

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
           EN  +  + N I T EG TH  G R ALT+ I K+    Q  +   +  +D+      ++
Sbjct: 172 ENETVLGFANNIHTREGATHVRGFRTALTKTINKFIREKQLNKGEEVRGEDVREGLTAVI 231

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV I  P+F GQTK KL S      +E+ L +       ++P+ A K+ E  +  ++ R 
Sbjct: 232 SVRISNPQFEGQTKGKLGSSWVAGAMESFLSEALQDKFDEDPLVAKKIAEKAVLTAQARE 291

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK ++   RK  +    LPGKLADC ++    +EL+IVEGDSAGGSAKQ R+R  QA+
Sbjct: 292 AARKAKDLAKRKNVLEGSNLPGKLADCQESDPAKSELYIVEGDSAGGSAKQGRDRRFQAI 351

Query: 490 LPLRGKILNVASAG-SEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVD 547
           LPL+GKILNV  +   EK   N ++  L+ A+GC    +   E+ LRY K+IIMTDADVD
Sbjct: 352 LPLKGKILNVEKSRGIEKFITNDEVRALITAVGCGLGDEEFSEKKLRYHKIIIMTDADVD 411

Query: 548 GAHIASLL 555
           G+HI +LL
Sbjct: 412 GSHIRTLL 419


>gi|2267060|gb|AAB63495.1| gyrase B subunit [Pseudoalteromonas aurantia]
          Length = 420

 Score =  266 bits (680), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 160/430 (37%), Positives = 251/430 (58%), Gaps = 15/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L +T+ R   +  QK++ G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLQLTIRRDGKVHQQKYTMGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    +     GT + F P  + F D   F    L K  +  ++L+  V    + ++E
Sbjct: 61  APLGVIGEA-ESTGTELRFWPSAETFSDTN-FHYDILAKRLRELSFLNSGVSIILNDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   +++ F + GG++ ++      ++ +   +F   TE+      +V+ ++ W +
Sbjct: 119 ------ENKQDHFKYEGGIQAFVAYLNRKKTPVHQSVFHFSTERDD--GISVKVSMQWND 170

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAV 367
                I  + N I   +GGTH +G R ALT  +  Y E     +        D+      
Sbjct: 171 GFQENIYCFTNNIPQRDGGTHLAGFRAALTLTLNTYMEKEGFNKNYKTIATGDNAREGLT 230

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            ++SV + +P+F+ QTK KLVS + +  VE  + +    +L++NP +A  ++  +++ + 
Sbjct: 231 AVVSVKVPDPKFSSQTKDKLVSSEVKGAVEQMMAEKLTEFLLENPGDAKTVVNKIVDAAR 290

Query: 428 ERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK RE+ R+   +    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR N
Sbjct: 291 AREAARKAREMTRRKGVMDLAGLPGKLADCQERDPALSELYIVEGDSAGGSAKQGRNRKN 350

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  E LRY ++IIMTDAD
Sbjct: 351 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPEKLRYHRIIIMTDAD 410

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 411 VDGSHIRTLL 420


>gi|68138750|gb|AAY86009.1| GyrB [Burkholderia cenocepacia]
          Length = 601

 Score =  266 bits (680), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 153/427 (35%), Positives = 234/427 (54%), Gaps = 17/427 (3%)

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G+ +SP+       N RGT + F  DP IFG    +    L K  +  ++L+  V+   +
Sbjct: 11  GVEVSPMLVTGDTEN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLT 68

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   E         F F GG+K +++   + ++ +   +F    EK G     VE A+
Sbjct: 69  DLRSGKEDD-------FAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGV---GVEVAM 118

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W +     +  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+ 
Sbjct: 119 QWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMR 178

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                +LSV + EP+F+ QTK KLVS + +  VE  +    + +L++ PI+A  +   ++
Sbjct: 179 EGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIV 238

Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           E +  R   RK RE+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R
Sbjct: 239 EAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGR 298

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIM 541
           +R  QA+LPLRGK+LNV  A  +K+ +++QI+ LV ALGC    +    + LRY ++IIM
Sbjct: 299 DRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIM 358

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           TDADVDGAHI +LLLTF Y++M D+IE+ ++++  PPL++I  G    +  D+      +
Sbjct: 359 TDADVDGAHIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERHLKDDVELNAHM 418

Query: 602 EEFKKHG 608
                 G
Sbjct: 419 LRLALQG 425


>gi|148971377|gb|ABR20226.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  266 bits (680), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 160/428 (37%), Positives = 234/428 (54%), Gaps = 13/428 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKF+   Y+ SGGLHGVG SVVNALS+ L + + +   I  Q + +G P 
Sbjct: 1   EVIMTVLHAGGKFEGKVYDTSGGLHGVGSSVVNALSETLFLEIHQNGLIHRQTYHKGTPE 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    +  ++RGT I F PD  I      F    L    +  A+L+  +      ++ 
Sbjct: 61  APLAVFGET-DQRGTTIRFWPDMTIMET-DQFSFETLAHRFREMAFLNPVLTIHLKDEET 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
           + E       E F+F GG+++++    EN+      +F  K  + G+ +  V +      
Sbjct: 119 LRE-------ETFHFEGGVQSFVSFLNENKKTFHDVLFFRKNMEDGS-QFEVAFQYQEST 170

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
           EN  +  + N I T EGGTH  G R A+T+ I ++    Q  +   +  +D+     GI+
Sbjct: 171 ENETVLGFANNIHTREGGTHVRGFRTAITKTINRFIREKQLNKGEEVRGEDVREGLSGII 230

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV I  P+F GQTK KL S      +E+ L +       ++P  A K+ E  +  ++ R 
Sbjct: 231 SVRIPSPQFEGQTKAKLGSSWVAGAMESFLSEVLQEKFEEDPQTAKKIAEKAVLTAQARE 290

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK ++   RK  +    LPGKLADC ++    +EL+IV GDSAGGSAKQ R+R  QA+
Sbjct: 291 AARKAKDLAKRKNVLEGSNLPGKLADCQESDPAKSELYIVVGDSAGGSAKQGRDRRFQAI 350

Query: 490 LPLRGKILNVASAG-SEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVD 547
           LPL+GKILNV  +   EK   N ++  L+ A+GC    +   E+ LRY K+IIMTDADVD
Sbjct: 351 LPLKGKILNVEKSRGIEKFITNDEVRALITAVGCGLGDEEFSEKKLRYHKIIIMTDADVD 410

Query: 548 GAHIASLL 555
           G+HI +LL
Sbjct: 411 GSHIRTLL 418


>gi|257168278|gb|ACV40273.1| DNA gyrase subunit B [Yersinia rohdei]
          Length = 279

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 95/288 (32%), Positives = 156/288 (54%), Gaps = 13/288 (4%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
           D   LHH+  EV+DNA+DE +AG+   I V++  +  ++V D+GRGIP   H +    S 
Sbjct: 3   DGTGLHHMVFEVVDNAIDEALAGHCKEIVVTIHSDNSVSVQDDGRGIPTGMHDE-EGVSA 61

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L + + R+  +  Q +  G+P
Sbjct: 62  AEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYRMGVP 121

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            +PL+   +  ++ GT + F P  + F +   F    L K  +  ++L+  V       +
Sbjct: 122 QAPLKVVGET-DQTGTTVRFWPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLRDKR 180

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
              E       + F++ GG+K +++   +N++ I  ++F   T K       VE A+ W 
Sbjct: 181 NDKE-------DHFHYEGGIKAFVEYLNKNKNPIHPKVFYFSTMKDDI---GVEVALQWN 230

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
           +     I  + N I   +GGTH  G R A+TR +  Y +     +   
Sbjct: 231 DGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAK 278


>gi|257168212|gb|ACV40239.1| DNA gyrase subunit B [Yersinia enterocolitica]
 gi|257168216|gb|ACV40241.1| DNA gyrase subunit B [Yersinia enterocolitica]
 gi|257168220|gb|ACV40243.1| DNA gyrase subunit B [Yersinia enterocolitica]
 gi|257168222|gb|ACV40244.1| DNA gyrase subunit B [Yersinia enterocolitica]
          Length = 279

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 95/288 (32%), Positives = 156/288 (54%), Gaps = 13/288 (4%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
           D   LHH+  EV+DNA+DE +AG+   I V++  +  ++V D+GRGIP   H +    S 
Sbjct: 3   DGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHSDNSVSVQDDGRGIPTGMHDE-EGVSA 61

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L + + R+  +  Q +  G+P
Sbjct: 62  AEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVP 121

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            +PL+   +  ++ GT + F P  + F +   F    L K  +  ++L+  V       +
Sbjct: 122 QAPLKVVGET-DQTGTTVRFWPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDKR 180

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
              E       + F++ GG+K +++   +N++ I  ++F   T K       VE A+ W 
Sbjct: 181 NDKE-------DHFHYEGGIKAFVEYLNKNKNPIHPKVFYFSTVKDDI---GVEVALQWN 230

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
           +     I  + N I   +GGTH  G R A+TR +  Y +     +   
Sbjct: 231 DGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAK 278


>gi|257168244|gb|ACV40255.1| DNA gyrase subunit B [Yersinia intermedia]
 gi|257168246|gb|ACV40256.1| DNA gyrase subunit B [Yersinia intermedia]
 gi|257168248|gb|ACV40257.1| DNA gyrase subunit B [Yersinia intermedia]
 gi|257168250|gb|ACV40258.1| DNA gyrase subunit B [Yersinia intermedia]
 gi|257168252|gb|ACV40259.1| DNA gyrase subunit B [Yersinia intermedia]
 gi|257168254|gb|ACV40260.1| DNA gyrase subunit B [Yersinia intermedia]
 gi|257168256|gb|ACV40261.1| DNA gyrase subunit B [Yersinia intermedia]
 gi|257168258|gb|ACV40262.1| DNA gyrase subunit B [Yersinia intermedia]
 gi|257168290|gb|ACV40279.1| DNA gyrase subunit B [Yersinia intermedia]
 gi|257168296|gb|ACV40282.1| DNA gyrase subunit B [Yersinia intermedia]
 gi|257168304|gb|ACV40288.1| DNA gyrase subunit B [Yersinia intermedia]
 gi|257168306|gb|ACV40289.1| DNA gyrase subunit B [Yersinia intermedia]
 gi|257168308|gb|ACV40290.1| DNA gyrase subunit B [Yersinia intermedia]
 gi|257168310|gb|ACV40291.1| DNA gyrase subunit B [Yersinia intermedia]
 gi|257168318|gb|ACV40295.1| DNA gyrase subunit B [Yersinia intermedia]
 gi|257168320|gb|ACV40296.1| DNA gyrase subunit B [Yersinia intermedia]
 gi|257168324|gb|ACV40298.1| DNA gyrase subunit B [Yersinia intermedia]
          Length = 279

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 94/288 (32%), Positives = 154/288 (53%), Gaps = 13/288 (4%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
           D   LHH+  EV+DNA+DE +AG+   I V++  +  ++V D+GRGIP   H +    S 
Sbjct: 3   DGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHSDNSVSVQDDGRGIPTGMHEE-EGVSA 61

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L + + R   +  Q +  G+P
Sbjct: 62  AEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYKMGVP 121

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            +PL+   +  +  GT + F P  + F +   F    L K  +  ++L+  V       +
Sbjct: 122 QAPLKMVGET-DLTGTTVRFWPSFQTFTNNIEFQYEILAKRLRELSFLNSGVSIKLKDKR 180

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
              E       + F++ GG++ +++   +N++ I  ++F   T K       VE A+ W 
Sbjct: 181 NDRE-------DHFHYEGGIRAFVEYLSKNKNPIHPKVFYFSTMKDDI---GVEVALQWN 230

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
           +     I  + N I   +GGTH  G R A+TR +  Y +     +   
Sbjct: 231 DGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAK 278


>gi|148470200|gb|ABQ66048.1| gyrase b [uncultured bacterium]
 gi|148971363|gb|ABR20219.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 164/430 (38%), Positives = 243/430 (56%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L +T+ R   I  Q++  G P+
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSRKLELTIHRAGHIHQQEYKHGDPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            PL          GT + F P  + F     F+   L +  +  ++L+  V+     ++ 
Sbjct: 61  YPLTVVGDT-ETTGTTVRFWPSAETFSQTI-FNVDILARRLRELSFLNAGVRIVLRDERI 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
            AE         F + GGL  +++   + ++ ++         + G     VE A+ W +
Sbjct: 119 HAE-------HVFDYEGGLSEFVKYINQGKTHLNDIFHFTVQAENGI---GVEVALQWND 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTRG+  Y E      K  +++  DD      
Sbjct: 169 TYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLNSYMENENLLKKGKVAVSGDDAREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERS 426
            I+SV + +P+F+ QTK KLVS + +  VE A+   F  YL++NP  A  +   +I    
Sbjct: 229 AIVSVKVPDPKFSSQTKEKLVSSEVKPAVEQAMNKSFSEYLLENPQAAKSIAGKIIDAAR 288

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK+A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  
Sbjct: 289 ARDAARKAREMTRRKSALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKM 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY K+IIMTDAD
Sbjct: 349 QAILPLKGKILNVERARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|148971289|gb|ABR20182.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 163/428 (38%), Positives = 241/428 (56%), Gaps = 13/428 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFDN+ Y++SGGLHGVG+SVVNALS+ L + +     I  Q + +G P 
Sbjct: 1   EVIMTVLHAGGKFDNNLYKVSGGLHGVGVSVVNALSETLFLEIHSNGLIHRQTYHKGAPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    +   +RGT I F PD  I      F    L    +  A+L+  +      ++ 
Sbjct: 61  APLTVFGETA-QRGTIIRFWPDMTIMET-DQFSFDTLSHRFRELAFLNPVLTIHLKEEET 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
           + E       E F+F GG+++++    EN+  +   +F  KT + G+ +  V +      
Sbjct: 119 LRE-------ETFHFEGGVQSFVSFLNENKKTLHDVLFFRKTLEDGS-QFEVAFQYQEST 170

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
           EN  +  + N I T EGGTH  G R A+T+ I ++    Q  +   +  +D+    +GI+
Sbjct: 171 ENETVLGFANNIHTREGGTHVRGFRTAITKTINRFIREKQLNKGEEVRGEDVREGLMGII 230

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV I  P+F GQTK +L S      +E+ L +       ++P+ A K+ E  +  ++ R 
Sbjct: 231 SVRIPGPQFEGQTKAELGSSWVAGAMESFLSEALQEKFEEDPLTAKKIAEKAVLTAQARE 290

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK ++   RK  +    LPGKLADC ++    +EL+IVEGDSAGGSAKQ R+R  QA+
Sbjct: 291 AARKAKDLAKRKNVLEGSNLPGKLADCQESDPAKSELYIVEGDSAGGSAKQGRDRRFQAI 350

Query: 490 LPLRGKILNVASAG-SEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVD 547
           LPL+GKILNV  +   EK   N ++  L+ A+GC    +   E+ LRY K+IIMTDADVD
Sbjct: 351 LPLKGKILNVEKSRGIEKFITNDEVRALITAVGCGLGEEEFSEKKLRYHKIIIMTDADVD 410

Query: 548 GAHIASLL 555
           G+HI +LL
Sbjct: 411 GSHIRTLL 418


>gi|257168214|gb|ACV40240.1| DNA gyrase subunit B [Yersinia enterocolitica]
 gi|257168218|gb|ACV40242.1| DNA gyrase subunit B [Yersinia enterocolitica]
 gi|257168224|gb|ACV40245.1| DNA gyrase subunit B [Yersinia enterocolitica]
 gi|257168226|gb|ACV40246.1| DNA gyrase subunit B [Yersinia enterocolitica]
 gi|257168228|gb|ACV40247.1| DNA gyrase subunit B [Yersinia enterocolitica]
 gi|257168230|gb|ACV40248.1| DNA gyrase subunit B [Yersinia enterocolitica]
 gi|257168298|gb|ACV40284.1| DNA gyrase subunit B [Yersinia enterocolitica]
          Length = 279

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 95/288 (32%), Positives = 156/288 (54%), Gaps = 13/288 (4%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
           D   LHH+  EV+DNA+DE +AG+   I V++  +  ++V D+GRGIP   H +    S 
Sbjct: 3   DGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHSDNSVSVQDDGRGIPTGMHDE-EGVSA 61

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L + + R+  +  Q +  G+P
Sbjct: 62  AEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVP 121

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            +PL+   +  ++ GT + F P  + F +   F    L K  +  ++L+  V       +
Sbjct: 122 QAPLKVVGET-DQTGTTVRFWPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDKR 180

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
              E       + F++ GG+K +++   +N++ I  ++F   T K       VE A+ W 
Sbjct: 181 NDKE-------DHFHYEGGIKAFVEYLNKNKNPIHPKVFYFSTMKDDI---GVEVALQWN 230

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
           +     I  + N I   +GGTH  G R A+TR +  Y +     +   
Sbjct: 231 DGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAK 278


>gi|2353022|gb|AAB92596.1| gyrase beta subunit [Shewanella putrefaciens 200]
          Length = 419

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 163/430 (37%), Positives = 245/430 (56%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L +T+ R   ++ Q ++ G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSRKLQMTIRRAGKVYEQFYTHGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+++        GT I F P    F D   F    L K  +  ++L+  V      +++
Sbjct: 61  APIKEIGDATK-TGTEIRFWPSEDTFSD-VEFHFEILAKRVRELSFLNSGVGIRLIDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + E F + GG+  ++     N++ ++ E+F    E+      TVE  + W +
Sbjct: 119 N-------KNEFFKYEGGISAFVDYLNRNKTPVNKEVFHFMQERDD--GITVEVVMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                I  + N I   +GGTH  G R ALTR +  Y E      K   +   DD      
Sbjct: 170 GYQENIFCFTNNIPQRDGGTHLVGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            ++SV + +P+F+ QTK KLVS + +  VE  + +  + YL++NP +A  ++  +++ + 
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEKLNDYLLENPADAKLIVGKIVDAAR 289

Query: 428 ERLRRRKQREVNR-KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                RK RE+ R K A+    LPGKLADC +     +E++IVEGD AGGSAKQ RNR N
Sbjct: 290 AGEAARKAREMTRCKGALDLGGLPGKLADCQEKDPGFSEIYIVEGDFAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+   Q++  L+ ALGC   R +Y  +  RY  +IIMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLFFQEVATLITALGCGIGRDEYNPDKTRYHNIIIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHILTLL 419


>gi|148971333|gb|ABR20204.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 177/430 (41%), Positives = 249/430 (57%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFDN +Y+ISGGLHGVG+SVVNALS+ELH+ +     I+ Q +  G P 
Sbjct: 1   EVIMTVLHAGGKFDNDSYKISGGLHGVGVSVVNALSEELHLVIRMNGKIYEQYYHHGEPA 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    +     GT + F+P  + F +   F    L K  +  A+L+  ++   + ++ 
Sbjct: 61  APLATIGESSEH-GTEVRFKPSAETFKN-IQFHYDVLAKRLRELAFLNSSIRIYLTDER- 117

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + E F + GGLK +++    N++ I S+IF    EK      TVE A+ W +
Sbjct: 118 ------TGKNEIFEYHGGLKGFVEDLNRNKTPIHSKIFYFNAEKDKV---TVEVAMQWND 168

Query: 311 ENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAV 367
              E    Y N I   +GGTH +G R  LTR +  Y E     +        DDL     
Sbjct: 169 TYQEKLFCYTNNIPQRDGGTHVAGFRSGLTRVLNNYIEKEGYAKREKVATSGDDLREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV +  P+F+ QTK KLVS + +  VE+ + + F  +L++NP +A  ++  VIE + 
Sbjct: 229 AVLSVKMPNPKFSAQTKDKLVSSEIKSIVESLMNEKFQEFLMENPQDAKGIVSKVIEAAR 288

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK RE   RK+A+    LPGKLADC +     +ELFIVEGDSAGGSAKQAR+R  
Sbjct: 289 AREAARKARELTRRKSALDVAGLPGKLADCQEEDPTKSELFIVEGDSAGGSAKQARDRKT 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDAD 545
           QAVLPL+GKILNV  A  +K+ ++ ++  L+ ALGC    +    + LRY  +IIMTDAD
Sbjct: 349 QAVLPLKGKILNVEKARFDKMLSSAEVATLITALGCGIGCEEYSPDKLRYHSIIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|257168236|gb|ACV40251.1| DNA gyrase subunit B [Yersinia frederiksenii]
 gi|257168242|gb|ACV40254.1| DNA gyrase subunit B [Yersinia frederiksenii]
          Length = 279

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 95/288 (32%), Positives = 156/288 (54%), Gaps = 13/288 (4%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
           D   LHH+  EV+DNA+DE +AG+   I V++  +  ++V D+GRGIP   H +    S 
Sbjct: 3   DGTGLHHMVFEVVDNAIDEALAGHCKEIVVTIHSDNSVSVQDDGRGIPTGMHDE-EGVSA 61

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L + + R+  +  Q +  G+P
Sbjct: 62  AEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYRMGVP 121

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            +PL+   +  ++ GT + F P  + F +   F    L K  +  ++L+  V       +
Sbjct: 122 QAPLKVVGET-DQTGTTVRFWPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDKR 180

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
              E       + F++ GG+K +++   +N++ I  ++F   T K       VE A+ W 
Sbjct: 181 NDKE-------DHFHYEGGIKAFVEYLNKNKNPIHPKVFYFSTMKDDI---GVEVALQWN 230

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
           +     I  + N I   +GGTH  G R A+TR +  Y +     +   
Sbjct: 231 DGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAK 278


>gi|289806573|ref|ZP_06537202.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 183

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 86/183 (46%), Positives = 124/183 (67%), Gaps = 3/183 (1%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVTDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L + + R   I  Q +  G+P +PL       +K GT + F P  + F + 
Sbjct: 121 SVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWPSHETFTNV 179

Query: 220 AGF 222
             F
Sbjct: 180 TEF 182


>gi|209863967|gb|ACI88901.1| GyrB [Sulfobacillus acidophilus]
          Length = 418

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 162/430 (37%), Positives = 244/430 (56%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALSD L + + R+  +   +F RG+P 
Sbjct: 1   EVIMTVLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLKLKIYRKGKVHQMEFHRGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL       +K+GT + F    + F     +    L K  +  ++L+  VK      + 
Sbjct: 61  APLAITG-TTDKKGTEVHFLASVETFVL-VEYHFEILAKRIRELSFLNNGVKIELIDQR- 117

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + E F F GG+K +++     + ++  ++F   +EK      TVE A+ W +
Sbjct: 118 ------TGKSENFAFSGGIKGFVEYMXRTKXVLHPKVFYAISEKDN---MTVEVAMQWND 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                +    N I   +GGTH +GLR A+TR + +Y E  +   K  +    DD+     
Sbjct: 169 SYSETVQCLTNNIPQRDGGTHLTGLRTAMTRTLNQYIEQNEFAKKAKVETTGDDMREGIT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + Q  V   +      +L +NP++A  +   ++E + 
Sbjct: 229 CVLSVKVPDPKFSSQTKDKLVSSEVQPVVSEIVAAKLAEFLEENPVDAKIVCGKIVEAAR 288

Query: 428 ERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK RE+ R+   +  + LPGKLADC +     +EL++VEGDSAGGSAKQ R+R  
Sbjct: 289 AREAARKAREITRRKGVMDTMGLPGKLADCQEKNPALSELYLVEGDSAGGSAKQGRDRKF 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+  +Q+I  L+ A+G          E LRY ++IIMTDAD
Sbjct: 349 QAILPLKGKILNVEKARFDKLLGSQEIATLITAMGTGIGKDDFNLEKLRYHRIIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|257168270|gb|ACV40268.1| DNA gyrase subunit B [Yersinia mollaretii]
          Length = 279

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 95/288 (32%), Positives = 155/288 (53%), Gaps = 13/288 (4%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
           D   LHH+  EV+DNA+DE +AG+   I V++  +  ++V D+GRGIP   H +    S 
Sbjct: 3   DGTGLHHMVFEVVDNAIDEALAGHCKEIVVTIHSDNSVSVQDDGRGIPTGMHDE-EGISA 61

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L + + R+  +  Q +  G+P
Sbjct: 62  AEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVP 121

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            +PL+   +  +  GT + F P  + F +   F    L K  +  ++L+  V       +
Sbjct: 122 QAPLKVVGET-DLTGTTVRFWPSFETFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDKR 180

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
              E       + F++ GG+K +++   +N++ I  ++F   T K       VE A+ W 
Sbjct: 181 NDRE-------DHFHYEGGIKAFVEYLSKNKNPIHPKVFYFSTVKDDI---GVEVALQWN 230

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
           +     I  + N I   +GGTH  G R A+TR +  Y +     +   
Sbjct: 231 DGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAK 278


>gi|56409824|emb|CAH65721.1| DNA gyrase [Vibrio aestuarianus]
          Length = 421

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 167/430 (38%), Positives = 252/430 (58%), Gaps = 14/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R+  IF Q +  G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIKRKGEIFQQIYHHGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    K     GTRI F P  + F +   F    L K  +  ++L+  V    + ++E
Sbjct: 61  APLAVIGKTEE-TGTRIRFWPSEETFTN-IEFHYEILAKRLRELSFLNSGVSIKLTDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + + F F GG++ +++    N++ I  +IF     ++     TVE A+ W +
Sbjct: 119 ------EDKSDHFMFEGGIRAFVEHLNRNKTPIHQKIFYFDHTRE-EDGITVEVAMQWND 171

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR +  + +      K   +   DD      
Sbjct: 172 GFQEGVYCFTNNIPQRDGGTHLAGFRGALTRTLNNFMDKEGYSKKAQAATSGDDAREGLT 231

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +L++NP EA  +   +I+   
Sbjct: 232 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMSEKLSEFLIENPTEAKIVCGKIIDAAR 291

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR N
Sbjct: 292 AREAARKARDMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKN 351

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDAD
Sbjct: 352 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDAD 411

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 412 VDGSHIRTLL 421


>gi|257168262|gb|ACV40264.1| DNA gyrase subunit B [Yersinia kristensenii]
 gi|257168300|gb|ACV40286.1| DNA gyrase subunit B [Yersinia kristensenii]
 gi|257168312|gb|ACV40292.1| DNA gyrase subunit B [Yersinia kristensenii]
 gi|257168314|gb|ACV40293.1| DNA gyrase subunit B [Yersinia kristensenii]
 gi|257168316|gb|ACV40294.1| DNA gyrase subunit B [Yersinia kristensenii]
 gi|257168322|gb|ACV40297.1| DNA gyrase subunit B [Yersinia kristensenii]
          Length = 279

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 94/288 (32%), Positives = 156/288 (54%), Gaps = 13/288 (4%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
           D   LHH+  EV+DNA+DE +AG+   I V++  +  ++V D+GRGIP   H +    S 
Sbjct: 3   DGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHSDNSVSVQDDGRGIPTGMHDE-EGVSA 61

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L + + R+  +  Q +  G+P
Sbjct: 62  AEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVP 121

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            +PL+   +  ++ GT + F P  + F +   F    L K  +  ++L+  V       +
Sbjct: 122 QAPLKVVGET-DQTGTTVRFWPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDKR 180

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
              E       + F++ GG++ +++   +N++ I  ++F   T K       VE A+ W 
Sbjct: 181 NDRE-------DHFHYEGGIRAFVEYLSKNKNPIHPKVFYFSTVKDDI---GVEVALQWN 230

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
           +     I  + N I   +GGTH  G R A+TR +  Y +     +   
Sbjct: 231 DGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAK 278


>gi|257168280|gb|ACV40274.1| DNA gyrase subunit B [Yersinia ruckeri]
 gi|257168282|gb|ACV40275.1| DNA gyrase subunit B [Yersinia ruckeri]
 gi|257168284|gb|ACV40276.1| DNA gyrase subunit B [Yersinia ruckeri]
 gi|257168286|gb|ACV40277.1| DNA gyrase subunit B [Yersinia ruckeri]
          Length = 279

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 95/288 (32%), Positives = 156/288 (54%), Gaps = 13/288 (4%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
           D   LHH+  EV+DNA+DE +AG+   I V++  +  ++V D+GRGIP   H +    S 
Sbjct: 3   DGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHSDNSVSVQDDGRGIPTGMHDE-EGVSA 61

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L + + R+  +  Q +  G+P
Sbjct: 62  AEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVP 121

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            +PL+   +  ++ GT + F P  + F +   F    L K  +  ++L+  V       +
Sbjct: 122 QAPLKMVGET-DQTGTTVRFWPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDKR 180

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
              E       + F++ GG+K +++   +N++ I  ++F   T K       VE A+ W 
Sbjct: 181 NDKE-------DHFHYEGGIKAFVEYLNKNKTPIHPKVFYFSTMKDDI---GVEVALQWN 230

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
           +     I  + N I   +GGTH  G R A+TR +  Y +     +   
Sbjct: 231 DGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAK 278


>gi|257168234|gb|ACV40250.1| DNA gyrase subunit B [Yersinia frederiksenii]
          Length = 279

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 95/288 (32%), Positives = 156/288 (54%), Gaps = 13/288 (4%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
           D   LHH+  EV+DNA+DE +AG+   I V++  +  ++V D+GRGIP   H +    S 
Sbjct: 3   DGTGLHHMVFEVVDNAIDEALAGHCKEIVVTIHSDNSVSVQDDGRGIPTGMHDE-EGVSA 61

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L + + R+  +  Q +  G+P
Sbjct: 62  AEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYRMGVP 121

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            +PL+   +  ++ GT + F P  + F +   F    L K  +  ++L+  V       +
Sbjct: 122 QAPLKVVGET-DQTGTTVRFWPSFQTFTNNTEFQYEILAKRLRDLSFLNSGVSIKLKDKR 180

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
              E       + F++ GG+K +++   +N++ I  ++F   T K       VE A+ W 
Sbjct: 181 NDKE-------DHFHYEGGIKAFVEYLNKNKNPIHPKVFYFSTMKDDI---GVEVALQWN 230

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
           +     I  + N I   +GGTH  G R A+TR +  Y +     +   
Sbjct: 231 DGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAK 278


>gi|295979567|dbj|BAJ07456.1| DNA gyrase subunit B [Prosthecomicrobium pneumaticum]
          Length = 306

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 115/316 (36%), Positives = 174/316 (55%), Gaps = 14/316 (4%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DNA+DE +AG+A+ + V+L+ +G  TV DNGRGIP + HP    
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHADEVSVTLNPDGSCTVKDNGRGIPTDIHP-GEG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALS  L + V R+  +   +F+ 
Sbjct: 60  VSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSAWLKLKVWRKGKVHEMRFTH 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G P +PL        + GT +TF P  + F     FD A L    +  A+L+  V+   +
Sbjct: 120 GEPDAPLAITGDWDGRNGTEVTFLPSTETFSK-TEFDYATLEHRLRELAFLNSGVRIVLT 178

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +        P++EE  + GGL+ +++     +  +  +  T + E+ G     VE A+
Sbjct: 179 DKR-----GVEPKREELMYEGGLEAFVRYLDRTKKPLVPDPITIRAERDGI---AVEVAM 230

Query: 307 AWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W +   E    + N I   +GGTH +G R ALTR +  YAE      K  +++  DD  
Sbjct: 231 WWNDTYHENVLCFTNNIPQRDGGTHLAGFRGALTRQVTAYAEAGGVSKKEKVALTGDDCR 290

Query: 364 ISAVGILSVFIREPEF 379
                +LSV + +P+F
Sbjct: 291 EGLTAVLSVKVPDPKF 306


>gi|2267064|gb|AAB63497.1| gyrase B subunit [Pseudoalteromonas citrea]
          Length = 422

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 165/432 (38%), Positives = 256/432 (59%), Gaps = 17/432 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L +T+ R+  +  Q +S G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLQLTIRREGKVHQQTYSMGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    +     GT + F P  + F D   F    L K  +  ++L+  V    S ++E
Sbjct: 61  APLAAIGE-SETTGTELRFWPSSETFTDIN-FHFDILAKRLRELSFLNSGVSIILSDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   +++ F + GG++ +++     ++ +   +F   +E++     +VE ++ W +
Sbjct: 119 DN------KRDHFKYDGGIQAFVEYLNRKKTPVHQSVFHFTSERED--GTSVEVSMQWND 170

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYA----ELTQNKRAISIISDDLMIS 365
                I  + N I   +GGTH +G R ALTR +  Y        + K   +   DD    
Sbjct: 171 GFQENIYCFTNNIPQRDGGTHLAGFRSALTRTLNTYMEKEGFNKKAKTNSNATGDDAREG 230

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++NP +A  ++  +I+ 
Sbjct: 231 LTAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLSDFLLENPGDAKIVVSKIIDA 290

Query: 426 SEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           +  R   RK RE+ R+   +    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR
Sbjct: 291 ARAREAARKAREMTRRKGVMDLAGLPGKLADCQERDPALSELYIVEGDSAGGSAKQGRNR 350

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTD 543
            NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  E LRY ++IIMTD
Sbjct: 351 KNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPEKLRYHRIIIMTD 410

Query: 544 ADVDGAHIASLL 555
           ADVDG+HI +LL
Sbjct: 411 ADVDGSHIRTLL 422


>gi|222103613|gb|ACM44315.1| GyrB [Shewanella xiamenensis]
          Length = 419

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 160/430 (37%), Positives = 247/430 (57%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L +T+ R   +  Q ++ G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLQLTIRRDGKVHEQFYTHGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+++        GT I F P  + F D   F    L K  +  ++L+  V      +++
Sbjct: 61  APIKEIGDATK-TGTEIRFWPSEQTFSD-VEFHFEILAKRVRELSFLNSGVGIRLVDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + E F + GG+  ++     N++ ++ ++F    E+      TVE A+ W +
Sbjct: 119 N-------KNEFFKYEGGISAFVDYLNRNKTPVNKDVFHFMQERDD--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R ALTR +  Y E      K   +   DD      
Sbjct: 170 GYQENIFCFTNNIPQRDGGTHLAGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +  + YL++NP +A  ++  +++   
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSSEVKAAVEQTMGEKLNDYLLENPADAKLIVGKIVDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  +  RY  ++IMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKTRYHNIVIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHIRTLL 419


>gi|222103621|gb|ACM44319.1| GyrB [Shewanella sp. S2]
          Length = 419

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 161/430 (37%), Positives = 247/430 (57%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L +T+ R   +  Q ++ G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLQLTIRRDGKVHEQFYTHGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+++        GT I F P  + F D   F    L K  +  ++L+  V      +++
Sbjct: 61  APIKEIGDATK-TGTEIRFWPSEQTFSD-VEFHFEILAKRVRELSFLNSGVGIRLVDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + E F + GG+  ++     N++ ++ ++F    E+      TVE A+ W +
Sbjct: 119 N-------KNEFFKYEGGISAFVDYLNRNKTPVNKDVFHFMQERDD--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R ALTR +  Y E      K   +   DD      
Sbjct: 170 GYQENIFCFTNNIPQRDGGTHLAGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +  + YL++NP +A  ++  +++   
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSSEVKAAVEQTMGEKLNDYLLENPADAKLIVGKIVDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  +  RY  +IIMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKTRYHNIIIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHIRTLL 419


>gi|257168240|gb|ACV40253.1| DNA gyrase subunit B [Yersinia frederiksenii]
          Length = 279

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 95/288 (32%), Positives = 156/288 (54%), Gaps = 13/288 (4%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
           D   LHH+  EV+DNA+DE +AG+   I V++  +  ++V D+GRGIP   H +    S 
Sbjct: 3   DGTGLHHMVFEVVDNAIDEALAGHCKEIVVTIHSDNSVSVQDDGRGIPTGMHDE-EGVSA 61

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L + + R+  +  Q +  G+P
Sbjct: 62  AEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYRMGVP 121

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            +PL+   +  ++ GT + F P  + F +   F    L K  +  ++L+  V       +
Sbjct: 122 QAPLKVVGET-DQTGTTVRFWPRFQTFTNTTEFQYEILAKRLRELSFLNSGVSIKLKDKR 180

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
              E       + F++ GG+K +++   +N++ I  ++F   T K       VE A+ W 
Sbjct: 181 NDKE-------DHFHYEGGIKAFVEYLNKNKNPIHPKVFYFSTMKDDI---GVEVALQWN 230

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
           +     I  + N I   +GGTH  G R A+TR +  Y +     +   
Sbjct: 231 DGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAK 278


>gi|257168206|gb|ACV40236.1| DNA gyrase subunit B [Yersinia aldovae]
          Length = 279

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 94/288 (32%), Positives = 154/288 (53%), Gaps = 13/288 (4%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
           D   LHH+  EV+DNA+DE +AG+   I V++  +  ++V D+GRGIP   H +    S 
Sbjct: 3   DGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHSDNSVSVQDDGRGIPTGMHDE-EGVSA 61

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L + + R   +  Q +  G+P
Sbjct: 62  AEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYKMGVP 121

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            +PL+   +     GT + F P  + F +   F    L K  +  ++L+  V      ++
Sbjct: 122 QAPLKMVGET-ELTGTTVRFWPSFQTFTNNIEFQYEILAKRLRELSFLNSGVSIKLKDNR 180

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
              E       + F++ GG++ +++   +N++ I  ++F   T K       VE A+ W 
Sbjct: 181 NDKE-------DHFHYEGGIRAFVEYLNKNKNPIHPKVFYFSTMKDDI---GVEVALQWN 230

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
           +     I  + N I   +GGTH  G R A+TR +  Y +     +   
Sbjct: 231 DGFQENIYCFTNNIPQRDGGTHLFGFRTAMTRTLNSYMDKEGYSKKAK 278


>gi|190148812|gb|ACE63381.1| DNA gyrase B subunit [Thermobifida halotolerans]
          Length = 423

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 152/429 (35%), Positives = 232/429 (54%), Gaps = 10/429 (2%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LH GGKFD+ +Y +SGGLHGVG+SVVNALS  L V V R   +++Q +    P+
Sbjct: 1   EVIMTVLHVGGKFDSKSYAVSGGLHGVGVSVVNALSTRLEVEVRRDGYVWTQCYEMTQPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           + L +  +  ++ GT+ITF  D  IF     ++   L +  Q  A+L+  +      ++ 
Sbjct: 61  TDLTR-GESTDETGTQITFWADGSIFETTT-YNFETLSRRLQEMAFLNRGLSITIRDER- 117

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                  P  + +++ GGL  ++      +    S +   +    G      E A+ W +
Sbjct: 118 PEFVGDSPVTQTYHYEGGLSDFVHHINATKEPARSTVIAFEDSGDGI---AAEIAMQWNQ 174

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                + ++ NTI T EGGTHE G R ALT  + +YA   +    +  ++  DD+     
Sbjct: 175 SYTSSVHTFANTINTAEGGTHEEGFRAALTSIVNRYARDQKLLRDKDDNLTGDDIREGLT 234

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERS 426
            I+SV + +P+F GQTKTKL + +A+  V+    +    +  +NP EA  ++ +      
Sbjct: 235 AIVSVKLTDPQFEGQTKTKLGNTEAKSFVQKVCHEHLRDWFDRNPGEAKDIVTKANQAAR 294

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RKT +    LPGKLADC       +E++IVEGDSAGGSAK  R+   
Sbjct: 295 ARIAARQARDLTRRKTLLESTSLPGKLADCQSTDPERSEVYIVEGDSAGGSAKGGRDPHY 354

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADV 546
           QA+LP+RGKILNV  A  ++I  N ++  ++ ALG      +  E LRY K+I+MTDADV
Sbjct: 355 QAILPIRGKILNVEKARIDRILKNNEVQAIITALGTGVHDDFDIEKLRYHKIILMTDADV 414

Query: 547 DGAHIASLL 555
           DG+HI +LL
Sbjct: 415 DGSHIRTLL 423


>gi|148616454|gb|ABQ96970.1| GyrB [Nocardiopsis halophila]
          Length = 424

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 154/430 (35%), Positives = 234/430 (54%), Gaps = 10/430 (2%)

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
           +E+I+T LHAGGKFD  +Y +SGGLHGVG+SVVNALS  L   V R   ++ Q +    P
Sbjct: 1   IEVIMTVLHAGGKFDGKSYAVSGGLHGVGVSVVNALSSRLEAEVRRDGHVWRQHYEVTRP 60

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            + + K E+     GT+ITF  DP IF     +    L +  Q  A+L+  +      ++
Sbjct: 61  TADVAKGEETAE-TGTQITFWADPTIFETTT-YSFETLARRMQEMAFLNKGLSITLRDER 118

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
                   P  + F++  GL  +++     +    + I   + + +G    +VE A+ W 
Sbjct: 119 -PEFLADGPVVQTFHYEDGLVDFVRHINAKKEPSHASIIDFEEDGEGI---SVEIAMQWN 174

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISA 366
           +     + ++ NTI T EGGTHE G R ALT  + +YA   +   ++  ++  DD+    
Sbjct: 175 QPYTSSVHTFANTINTAEGGTHEEGFRTALTSVVNRYARDQKLLREKDDNLTGDDIREGL 234

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIER 425
             I+SV + +P+F GQTKTKL + +A+  V+    +    +  +NP EA  ++ +     
Sbjct: 235 TAIISVKLADPQFEGQTKTKLGNTEAKSFVQRVTHEHVRDWFERNPGEAKDIVSKASQAA 294

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
                 R+ +    RKT +    LPGKL+DC       +E++IVEGDSAGGSAK  R+  
Sbjct: 295 RARIAARQARDLTRRKTLLESTSLPGKLSDCQSTEPEKSEVYIVEGDSAGGSAKGGRDPL 354

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545
            QA+LP+RGKILNV  A  ++I  N ++  ++ ALG      +  E LRY K+I+MTDAD
Sbjct: 355 YQAILPIRGKILNVEKARIDRILKNNEVQAIITALGTGIHDDFDIEKLRYHKIILMTDAD 414

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 415 VDGSHIRTLL 424


>gi|148971343|gb|ABR20209.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 177/430 (41%), Positives = 249/430 (57%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFDN +Y+ISGGLHGVG+SVVNALS+ELH+ +     I+ Q +  G P 
Sbjct: 1   EVIMTVLHAGGKFDNDSYKISGGLHGVGVSVVNALSEELHLVIRMNGKIYEQYYHHGEPA 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    +     GT + F+P  + F +   F    L K  +  A+L+  ++   + ++ 
Sbjct: 61  APLATIGESSEH-GTEVRFKPSAETFKN-IQFHYDVLAKRLRELAFLNSSIRIYLTDER- 117

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + E F + GGLK +++    N++ I S+IF    EK      TVE A+ W +
Sbjct: 118 ------TGKNEIFEYHGGLKGFVEDLNRNKTPIHSKIFYFNAEKDKV---TVEVAMQWND 168

Query: 311 ENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAV 367
              E    Y N I   +GGTH +G R  LTR +  Y E     +        DDL     
Sbjct: 169 TYQEKLFCYTNNIPQRDGGTHVAGFRSGLTRVLNNYIEKEGYAKREKVATSGDDLREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV +  P+F+ QTK KLVS + +  VE+ + + F  +L++NP +A  ++  VIE + 
Sbjct: 229 AVLSVKMPNPKFSAQTKDKLVSSEIKSIVESLMNEKFQEFLMENPQDAKSIVSKVIEAAR 288

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK RE   RK+A+    LPGKLADC +     +ELFIVEGDSAGGSAKQAR+R  
Sbjct: 289 AREAARKARELTRRKSALDVAGLPGKLADCQEEDPTKSELFIVEGDSAGGSAKQARDRKT 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDAD 545
           QAVLPL+GKILNV  A  +K+ ++ ++  L+ ALGC    +    + LRY  +IIMTDAD
Sbjct: 349 QAVLPLKGKILNVEKARFDKMLSSAEVATLITALGCGIGREEYSPDKLRYHSIIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|257168208|gb|ACV40237.1| DNA gyrase subunit B [Yersinia aleksiciae]
 gi|257168260|gb|ACV40263.1| DNA gyrase subunit B [Yersinia aleksiciae]
 gi|257168266|gb|ACV40266.1| DNA gyrase subunit B [Yersinia aleksiciae]
 gi|257168288|gb|ACV40278.1| DNA gyrase subunit B [Yersinia aleksiciae]
          Length = 279

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 94/288 (32%), Positives = 155/288 (53%), Gaps = 13/288 (4%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
           D   LHH+  EV+DNA+DE +AG+   I V++  +  ++V D+GRGIP   H +    S 
Sbjct: 3   DGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHSDNSVSVQDDGRGIPTGLHEE-EGVSA 61

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L + + R+  +  Q +  G+P
Sbjct: 62  AEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVP 121

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            +PL+   +  +  GT + F P  + F +   F    L K  +  ++L+  V       +
Sbjct: 122 QAPLKVVGET-DLTGTTVRFWPSFQTFTNNTEFQYEMLAKRLRELSFLNSGVSIKLKDKR 180

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
              E       + F++ GG++ +++   +N++ I  ++F   T K       VE A+ W 
Sbjct: 181 NDRE-------DHFHYEGGIRAFVEYLSKNKNPIHPKVFYFSTVKDDI---GVEVALQWN 230

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
           +     I  + N I   +GGTH  G R A+TR +  Y +     +   
Sbjct: 231 DGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAK 278


>gi|148971369|gb|ABR20222.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 177/430 (41%), Positives = 249/430 (57%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFDN +Y+ISGGLHGVG+SVVNALS+ELH+ +     I+ Q +  G P 
Sbjct: 1   EVIMTVLHAGGKFDNDSYKISGGLHGVGVSVVNALSEELHLVIRMNGKIYEQYYHHGEPA 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    +     GT + F+P  + F +   F    L K  +  A+L+  ++   + ++ 
Sbjct: 61  APLATIGESSEH-GTEVRFKPSAETFKN-IQFHYDVLAKRLRELAFLNSSIRIYLTDER- 117

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + E F + GGLK +++    N++ I S+IF    EK      TVE A+ W +
Sbjct: 118 ------TGKNEIFEYHGGLKGFVEDLNRNKTPIHSKIFYFNAEKDKV---TVEVAMQWND 168

Query: 311 ENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAV 367
              E    Y N I   +GGTH +G R  LTR +  Y E     +        DDL     
Sbjct: 169 TYQEKLFCYTNNIPQRDGGTHVAGFRSGLTRVLNNYIEKEGYAKREKVATSGDDLREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV +  P+F+ QTK KLVS + +  VE+ + + F  +L++NP +A  ++  VIE + 
Sbjct: 229 AVLSVKMPNPKFSAQTKDKLVSSEIKSIVESLMNEKFQEFLMENPQDAKGIVSKVIEAAR 288

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK RE   RK+A+    LPGKLADC +     +ELFIVEGDSAGGSAKQAR+R  
Sbjct: 289 AREAARKARELTRRKSALDVASLPGKLADCQEEDPTKSELFIVEGDSAGGSAKQARDRKT 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDAD 545
           QAVLPL+GKILNV  A  +K+ ++ ++  L+ ALGC    +    + LRY  +IIMTDAD
Sbjct: 349 QAVLPLKGKILNVEKARFDKMLSSAEVATLITALGCGIGREEYSPDKLRYHSIIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|56409818|emb|CAH65718.1| DNA gyrase [Vibrio aestuarianus]
          Length = 421

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 166/430 (38%), Positives = 251/430 (58%), Gaps = 14/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R+  IF Q +  G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIKRKGEIFQQIYHHGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    K     GTRI F P  + F +   F    L K  +  ++L+  V    + ++E
Sbjct: 61  APLAVIGKTEE-TGTRIRFWPSEETFTN-IEFHYEILAKRLRELSFLNSGVSIKLTDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + + F F GG++ +++    N++ I  +IF     ++     TVE A+ W +
Sbjct: 119 ------EDKSDHFMFEGGIRAFVEHLNRNKTPIHQKIFYFDHTRE-EDGITVEVAMQWND 171

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR +  + +      K   +   DD      
Sbjct: 172 GFQEGVYCFTNNIPQRDGGTHLAGFRGALTRTLNNFMDKEGYSKKAQAATSGDDAREGLT 231

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +L++NP EA  +   +I+   
Sbjct: 232 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMSEKLSEFLIENPTEAKIVCXKIIDAAR 291

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR N
Sbjct: 292 AREAARKARDMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKN 351

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIM DAD
Sbjct: 352 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMADAD 411

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 412 VDGSHIRTLL 421


>gi|56409814|emb|CAH65716.1| DNA gyrase [Vibrio aestuarianus]
          Length = 421

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 166/430 (38%), Positives = 251/430 (58%), Gaps = 14/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R+  IF Q +  G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIKRKGEIFQQIYHHGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    K     GT I F P  + F +   F    L K  +  ++L+  V    + ++E
Sbjct: 61  APLAVIGKTEE-TGTXIRFWPSEETFTN-IEFHYEILAKRLRELSFLNSGVSIKLTDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + + F F GG++ +++    N++ I  +IF     ++     TVE A+ W +
Sbjct: 119 ------EDKSDHFMFEGGIRAFVEHLNRNKTPIHQKIFYFDHTRE-EDGITVEVAMQWND 171

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR +  + +      K   +   DD      
Sbjct: 172 GFQEGVYCFTNNIPQRDGGTHLAGFRGALTRTLNNFMDKEGYSKKAQAATSGDDAREGLT 231

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +L++NP EA  +   +I+   
Sbjct: 232 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMSEKLSEFLIENPTEAKIVCGKIIDAAR 291

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR N
Sbjct: 292 AREAARKARDMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKN 351

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDAD
Sbjct: 352 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDAD 411

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 412 VDGSHIRTLL 421


>gi|257168294|gb|ACV40281.1| DNA gyrase subunit B [Yersinia intermedia]
          Length = 279

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 93/286 (32%), Positives = 153/286 (53%), Gaps = 13/286 (4%)

Query: 72  KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLE 131
             LHH+  EV+DNA+DE +AG+   I V++  +  ++V D+GRGIP   H +    S  E
Sbjct: 5   TGLHHMVFEVVDNAIDEALAGHCKEIIVTIHSDNSVSVQDDGRGIPTGMHEE-EGVSAAE 63

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           +I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L + + R   +  Q +  G+P +
Sbjct: 64  VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYKMGVPQA 123

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
           PL+   +  +  GT + F P  + F +   F    L K  +  ++L+  V       +  
Sbjct: 124 PLKMVGET-DLTGTTVRFWPSFQTFTNNIEFQYEILAKRLRELSFLNSGVSIKLKDKRND 182

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
            E       + F++ GG++ +++   +N++ I  ++F   T K       VE A+ W + 
Sbjct: 183 RE-------DHFHYEGGIRAFVEYLSKNKNPIHPKVFYFSTMKDDI---GVEVALQWNDG 232

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
               I  + N I   +GGTH  G R A+TR +  Y +     +   
Sbjct: 233 FQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAK 278


>gi|56409828|emb|CAH65723.1| DNA gyrase [Vibrio aestuarianus]
          Length = 421

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 166/430 (38%), Positives = 251/430 (58%), Gaps = 14/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R+  IF Q +  G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIKRKGEIFQQIYHHGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    K     GTRI F P  + F +   F    L K  +  ++L+  V    + ++E
Sbjct: 61  APLAVIGKTEE-TGTRIRFWPSEETFTN-IEFHYEILAKRLRELSFLNSGVSIKLTDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + + F F GG++ +++    N++ I  +IF     ++     TVE A+ W +
Sbjct: 119 ------EDKSDHFMFEGGIRAFVEHLNRNKTPIHQKIFYFDHTRE-EDGITVEVAMQWND 171

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR +  + +      K   +   DD      
Sbjct: 172 GFQEGVYCFTNNIPQRDGGTHLAGFRGALTRTLNNFMDKEGYSKKAQAATSGDDAREGLT 231

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +L++NP EA  +   +I+   
Sbjct: 232 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMSEKLSEFLIENPTEAKIVCGKIIDAAR 291

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR N
Sbjct: 292 AREAARKARDMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKN 351

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIM DAD
Sbjct: 352 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMADAD 411

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 412 VDGSHIRTLL 421


>gi|148616442|gb|ABQ96964.1| GyrB [Nocardiopsis baichengensis]
          Length = 424

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 153/430 (35%), Positives = 234/430 (54%), Gaps = 10/430 (2%)

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
           +E+I+T LHAGGKFD  +Y +SGGLHGVG+SVVNALS  L   V R   ++ Q +    P
Sbjct: 1   IEVIMTVLHAGGKFDGKSYAVSGGLHGVGVSVVNALSSRLEAEVRRDGHVWRQHYEVTRP 60

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            + + K E+     GT+ITF  DP IF     +    L +  Q  A+L+  +      ++
Sbjct: 61  TADVAKGEETAE-TGTQITFWADPTIFETTT-YSFETLARRMQEMAFLNKGLSITLRDER 118

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
                   P  + F++  GL  +++     +    + I   + + +G    +VE A+ W 
Sbjct: 119 -PEFLADGPVVQTFHYEDGLVDFVRHINAKKEPSHASIIDFEEDGEGI---SVEIAMQWN 174

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISA 366
           +     + ++ NTI T EGGTHE G R ALT  + +YA   +   ++  ++  DD+    
Sbjct: 175 QSYTSSVHTFANTINTAEGGTHEEGFRTALTSVVNRYARDQKLLREKDDNLTGDDIREGL 234

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIER 425
             I+SV + +P+F GQTKTKL + +A+  V+    +    +  +NP EA  ++ +     
Sbjct: 235 TAIISVKLADPQFEGQTKTKLGNTEAKSFVQRVTHEHVRDWFERNPGEAKDIVSKASQAA 294

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
                 R+ +    RKT +    LPGKL+DC       +E++IVEGDSAGGSAK  R+  
Sbjct: 295 RARIAARQARDLTRRKTLLESTSLPGKLSDCQSTEPEKSEVYIVEGDSAGGSAKGGRDPL 354

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545
            QA+LP+RGKILNV  A  ++I  N ++  ++ ALG      +  + LRY K+I+MTDAD
Sbjct: 355 YQAILPIRGKILNVEKARIDRILKNNEVQAIITALGTGIHDDFDIDKLRYHKIILMTDAD 414

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 415 VDGSHIRTLL 424


>gi|148470226|gb|ABQ66060.1| gyrase b [uncultured bacterium]
          Length = 419

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 163/430 (37%), Positives = 244/430 (56%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L +T+ R   I  Q++  G   
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELTIHRAGKIHEQEYRHGDSQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            PL+      N+ GTR+ F P  + F     F+   L +  +  ++L+  V+     ++ 
Sbjct: 61  YPLKVVGDT-NRTGTRVRFWPSAETFSQTI-FNVDILARRLRELSFLNAGVRIVLRDERI 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
            AE         F + GGL  +++   E  + ++        +       TVE A+ W +
Sbjct: 119 NAE-------HVFDYEGGLSEFVKYINEGNTHLNDIFHFTAAQADN--GITVEVALQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTRG+  Y +      K  +++  DD      
Sbjct: 170 SYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLNNYMDSENILKKEKVAVSGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERS 426
            I+SV + +P+F+ QTK KLVS + +  VE A+   F  YL++NP  A  +   +I    
Sbjct: 230 AIVSVKVPDPKFSSQTKEKLVSSEVKTAVEQAMNKAFSEYLLENPQAAKAIAGKIIDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK+A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  
Sbjct: 290 ARDAARKAREMTRRKSALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKM 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +++ ++ ++  L+ ALGC   R +Y  + LRY K+IIMTDAD
Sbjct: 350 QAILPLKGKILNVERARFDRMISSAEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHIRTLL 419


>gi|257168302|gb|ACV40287.1| DNA gyrase subunit B [Yersinia intermedia]
          Length = 279

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 94/288 (32%), Positives = 153/288 (53%), Gaps = 13/288 (4%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
           D   LHH+  EV+DNA+DE +AG+   I V++  +  ++V D+GRGIP   H +    S 
Sbjct: 3   DGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHSDNSVSVQDDGRGIPTGMHEE-EGVSA 61

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L + + R   +  Q +  G+P
Sbjct: 62  AEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYKMGVP 121

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            +PL+   +  +  GT + F P  + F +   F    L K  +   +L+  V       +
Sbjct: 122 QAPLKMVGET-DLTGTTVRFWPSFQTFTNNIEFQYEILAKRLRELWFLNSGVSIKLKDKR 180

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
              E       + F++ GG++ +++   +N++ I  ++F   T K       VE A+ W 
Sbjct: 181 NDRE-------DHFHYEGGIRAFVEYLSKNKNPIHPKVFYFSTMKDDI---GVEVALQWN 230

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
           +     I  + N I   +GGTH  G R A+TR +  Y +     +   
Sbjct: 231 DGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAK 278


>gi|222103615|gb|ACM44316.1| GyrB [Shewanella sp. JCM 14937M]
          Length = 419

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 161/430 (37%), Positives = 249/430 (57%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L +T+ R   I+ Q ++ G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLQLTIRRAGKIYEQFYTHGVPN 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            P+++        GT I F P  + F D   F    L K  +  ++L+  V      +++
Sbjct: 61  EPIKEIGDAVK-TGTEIRFWPSAQTFSD-VEFHFDILAKRVRELSFLNSGVGIRLVDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             +       E F + GG+  ++     N++ ++ ++F    E++     TVE A+ W +
Sbjct: 119 NKD-------EFFKYEGGISAFVHYLNRNKTPVNKDVFHFSQERED--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R ALTR +  Y E      K   +   DD      
Sbjct: 170 GYQENIFCFTNNIPQRDGGTHLAGFRGALTRNLNTYMEREGYNKKGKTNATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +  + YL++NP +A  ++  +++   
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGEQLNDYLLENPADAKLIVGKIVDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  +  RY  ++IMTDAD
Sbjct: 350 QAILPLKGKILNVEKAHFDKMLSSQEVATLITALGCGIGRDEYNPDKTRYHNIVIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHIRTLL 419


>gi|310722598|ref|YP_003969421.1| topoisomerase II large subunit [Aeromonas phage phiAS5]
 gi|306021441|gb|ADM79975.1| topoisomerase II large subunit [Aeromonas phage phiAS5]
          Length = 614

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 143/664 (21%), Positives = 243/664 (36%), Gaps = 88/664 (13%)

Query: 50  RILEGLEPVRMRPGMYIGGTDE-----------------KALHHLFSEVIDNAMDEVIAG 92
           ++L   E   +   MY+G                       L  +  EVIDN++DE I  
Sbjct: 6   KVLSDKEHCLINTDMYVGSVSTETHDVLIDGKFQPLTYVPGLVKITDEVIDNSVDEAIRT 65

Query: 93  ---YANLIEVSLDGNGFLTVVDNGRGIPVENH--PKFPNKSTLEIILTTLHAGGKFDNST 147
              +AN+IE+++  +  ++V DNGRG+P      P+           T   AG  F    
Sbjct: 66  NFEHANVIEITV-ADNKVSVKDNGRGLPQGTVVTPEGLEVPLPLAAWTRARAGSNFSAD- 123

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
              + G +GVG ++ N  SD          T+ +   +            K    +GT +
Sbjct: 124 -RKTIGKNGVGSALTNFFSDSFIGETGNGETVVTVSCTNNADEVSYSV--KKGKFKGTVV 180

Query: 208 TFRPDPKIFGDKA--GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           TF PD   FG           +     + A    +V   ++  K  +            F
Sbjct: 181 TFVPDFTRFGVFNLDEDFEQVIKSRLITLAVNFPQVTFKYNGKKVDS-----------KF 229

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTD 325
                 +      N   +S    T +  +                      S+ N + T 
Sbjct: 230 QKFAAQFGDVVCHNDDNVSVFFGTSEEYR--------------------QLSFVNGVHTK 269

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           +GG H  G+  +L+  +     + +  +     +       +G+    +  P++ GQTK 
Sbjct: 270 QGGNHVYGVLDSLSEEL--IPMIKRQHKIEINKARIKECLIIGLFIRNLVAPKYDGQTKE 327

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIR 445
           +L S  AQ        +     L +  ++  ++++ +I  +  +     +    +     
Sbjct: 328 RLSSPWAQIR---DHMNLDYKGLARKILKTPEVIDPIIASALAKKEAADKAAATKAQKKA 384

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
           K     K    S      T LF+ EGDSA G   + RN  +Q   PLRGK+LNV +    
Sbjct: 385 KAANVAKHVKASGLGRTKTTLFLAEGDSAIGPFIRFRNEESQGGYPLRGKMLNVWNLADH 444

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH-IASLLLTFFYQEMY 564
           ++  N++I DL+  L    RS+       Y  + IMTDAD DG   IA L + FFY+   
Sbjct: 445 EVLKNKEISDLLGILNVDLRSKEAP---AYTNIAIMTDADQDGKGSIAMLAIAFFYKYWP 501

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
              EQ  + ++  P +  T G K+ +++  E  +       K    K      KGLG + 
Sbjct: 502 HWFEQGRIHIVRTPEYISTNGKKTDWSYSREEFRS------KKFDSKWTHRHIKGLGTLT 555

Query: 625 ASQLK--ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
             + K  E         L ++ I+      +DT   +  L G    +R  ++     F +
Sbjct: 556 T-EGKNCEYKQCIENLVLEQIVID------EDTPAMLEMLFGDDESKRKTWL----GFGE 604

Query: 683 DVGT 686
           D   
Sbjct: 605 DFDA 608


>gi|119369912|gb|ABL67970.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 421

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 177/430 (41%), Positives = 244/430 (56%), Gaps = 14/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKF+ + Y++SGGLHGVG+SVVNALS+ L + + R       +F  G P 
Sbjct: 1   EVIMTVLHAGGKFEQNAYKVSGGLHGVGVSVVNALSEWLELRIWRSGQEHKMRFHDGEPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL        KRGT +TF P P+ F     FD A L    +  A+L+  V    S  + 
Sbjct: 61  APLALVGPANGKRGTEVTFLPSPRTFTK-TEFDYATLEHRLRELAFLNSGVTIRLSDQRG 119

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
           + +K         ++ GGL+ +++     ++ +         E+ G    TVE A++W +
Sbjct: 120 VEKKESK-----LHYEGGLEAFVRYLDRAKNGLIPAPLLITGERDGI---TVEAALSWND 171

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR + KYAE +    K  + I  DD      
Sbjct: 172 SYHESMLCFTNNIPQRDGGTHLAGFRAALTRVVIKYAEDSGIAKKEKVQISGDDCREGLT 231

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE+   D    +  ++P EA  ++  V+E + 
Sbjct: 232 CVLSVKVPDPKFSSQTKDKLVSSEVRPVVESVAADQIGRWFEEHPGEAKTVVGKVVEAAA 291

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK RE   RK A     LPGKLADC +      ELFIVEGDSAGGSAKQARNR+N
Sbjct: 292 AREAARKARELTRRKGAFDSASLPGKLADCQERDPAKCELFIVEGDSAGGSAKQARNRNN 351

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QAVLPLRGKILNV  A  +K+ ++  I  L+ ALG      ++  E LRY K+IIMTDAD
Sbjct: 352 QAVLPLRGKILNVERARFDKMLSSDAIATLITALGTSVGPEEFNPEKLRYHKIIIMTDAD 411

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 412 VDGSHIRTLL 421


>gi|222103611|gb|ACM44314.1| GyrB [Shewanella decolorationis]
          Length = 419

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 161/430 (37%), Positives = 245/430 (56%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L +T+ R+  +  Q ++ G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLQLTIRREGKVHEQFYTHGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            P++         GT I F P  + F D   F    L K  +  ++L+  V      +++
Sbjct: 61  EPIKVIGDATK-TGTEIRFWPSEETFSD-VEFHFEILAKRVRELSFLNSGVGIRLVDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + E F + GG+  ++     N++ ++  +F    E+      TVE A+ W +
Sbjct: 119 N-------KNEFFKYEGGISAFVDYLNRNKTPVNKGVFHFMQERDD--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R ALTR +  Y E      K   +   DD      
Sbjct: 170 GYQESIFCFTNNIPQRDGGTHLAGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +  + YL++NP +A  ++  +++   
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSSEVKAAVEQTMGEKLNDYLLENPADAKLIVGKIVDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  +  RY  +IIMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRGEYNPDKTRYHNIIIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHIRTLL 419


>gi|148971375|gb|ABR20225.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 419

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 166/430 (38%), Positives = 256/430 (59%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++LH+T+ R   ++ Q +  G P+
Sbjct: 1   EVIMTVLHAGGKFDSNSYKVSGGLHGVGVSVVNALSEKLHLTIRRDGKVYEQDYKLGDPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            PL++  K   +RGT +TF+P   IF     +    L K  +  ++L+  V      ++ 
Sbjct: 61  GPLKETGKT-EQRGTEVTFKPSSTIFTQTV-YSYDILAKRLRELSFLNSGVLITLYDERT 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   +++EF++ GGL+ +++   +N+ +I+ ++F    E+ G    TVE A+ W +
Sbjct: 119 ------GGKEDEFHYQGGLREFVKHLNKNKEVINEDMFYYCGEENGI---TVEIAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                +  Y N I   +GGTH +G R ALTR +  Y E      K  ++I  DD      
Sbjct: 170 GYQENMFCYTNNIPQRDGGTHLAGFRGALTRSLNGYIEQEGIAKKSKVAISGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            +LSV + +P+F+ QTK KLVS + +  VE+ + +    YL++ P  A  +   +++   
Sbjct: 230 AVLSVKVPDPKFSSQTKDKLVSSEVKPVVESLVAEHLQAYLLEKPAAAKSIAGKIVDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK+A+    LPGKLADC +     +ELF+VEGDSAGGSAKQAR+R  
Sbjct: 290 AREAARKAREMTRRKSALDIAGLPGKLADCQEKDPAFSELFLVEGDSAGGSAKQARDRRT 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+  + ++  L+ ALG    R +Y  + +RY  +IIMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLESAEVGTLITALGTGIGRDEYEPQKVRYHSIIIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHIRTLL 419


>gi|2267054|gb|AAB63492.1| gyrase B subunit [Alteromonas macleodii ATCC 27126]
          Length = 419

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 162/430 (37%), Positives = 245/430 (56%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHG+G+SVVNALS  L + + R      Q++  G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGLGVSVVNALSSRLKLRIRRGGKAHEQEYHHGVPT 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL       +K GT I F P    F D   +    L K  +  ++L+  V      +++
Sbjct: 61  APLAVTGDT-DKAGTMIRFWPSSDTFTDTL-YHYDILAKRLRELSFLNSGVSIRLKDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       + F + GG+K +++   E ++ +  ++F    E++      VE A+ W +
Sbjct: 119 GKE-------DHFMYEGGIKAFVEYLNEKKTPVHQKVFHFSIEQED--GIAVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR +  Y E      K   +   DD      
Sbjct: 170 SFQENVFCFTNNIPQRDGGTHLAGFRGALTRTLNNYMEKEGLNKKAKTNASGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +L++NP E+  +   +I+   
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSSEVRPAVESAMNEKLAEFLLENPAESKIIAGKIIDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ A+GC   R +Y  E LRY  +IIMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITAVGCGIGRDEYDPEKLRYHSIIIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHIRTLL 419


>gi|148470224|gb|ABQ66059.1| gyrase b [uncultured bacterium]
          Length = 424

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 159/429 (37%), Positives = 246/429 (57%), Gaps = 11/429 (2%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD STY++SGGLHGVG+S VN LS++  V + R    + Q+++RGIPL
Sbjct: 1   EVIMTVLHAGGKFDASTYKVSGGLHGVGVSCVNGLSEQFEVEIWRGGHTYEQEYARGIPL 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
             L +      KRGT++ F PD  IF     ++   L +  +  A+L+  ++   + ++ 
Sbjct: 61  DKLHQTG-TSKKRGTKVHFLPDKTIFTVT-EYNYDTLAQRLRELAFLNKGLEISLTDERT 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
              K G  +  EF + GG+  +++     +  +  +    + E+       +E A+ + +
Sbjct: 119 TDPKTGEAKHTEFKYSGGIAEFIKHLNRGKQTLHDKPIYMEAERDNV---VMEIAMQYND 175

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAV 367
                + ++ N I T +GGTH SG R ALTR I    +     + +  ++  DD+    V
Sbjct: 176 GYSETVFTFANNINTVDGGTHLSGFRTALTRTINAAGQQMGLFKDLKENLSGDDVREGLV 235

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            ++SV + +P+F GQTK KL + D    V++ L +    +L QNP    +++   IE S 
Sbjct: 236 AVISVKLPQPQFEGQTKGKL-NSDISGIVQSFLNERLGMFLEQNPPITRRIINKAIEASR 294

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK R+   RK A+    LPGKLADCS+      EL++VEG+SAGG+AKQ R+R  
Sbjct: 295 AREAARKARDLTRRKGALDGGGLPGKLADCSERRPERCELYLVEGESAGGTAKQGRDRRY 354

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+  +++I  ++ ALGC    +  +   LRY K+I+MTDAD
Sbjct: 355 QAILPLKGKILNVEKARYDKMLGHEEIRAMITALGCGIGKEDFDASKLRYGKLILMTDAD 414

Query: 546 VDGAHIASL 554
           VDG+HI +L
Sbjct: 415 VDGSHIRTL 423


>gi|222103619|gb|ACM44318.1| GyrB [Shewanella aquimarina]
          Length = 419

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 166/430 (38%), Positives = 250/430 (58%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L +T+ R   ++ Q ++ G P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKLTIRRDGKLYEQFYTMGEPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+ +  +  N  GT I F P P+ F D   F    L K  +  ++L+  V      +++
Sbjct: 61  APIAEIGEATN-TGTEIRFWPSPETFSDTL-FHFDILAKRVRELSFLNSGVGIRLIDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             +       E F + GG+  ++     N++ ++ EIF    E++     TVE A+ W +
Sbjct: 119 NKD-------EFFKYEGGISAFVDYLNLNKTPVNKEIFHFVQERED--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R ALTR +  Y +      K   S   DD      
Sbjct: 170 GFQENIFCFTNNIPQRDGGTHLAGFRAALTRNLNSYMDKEGFNKKGKASATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP EA  ++  +I+   
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGEKLGDYLLENPNEAKLIVGKIIDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARKAREMTRRKGALDLGGLPGKLADCQEKDPALSEIYIVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  +  RY  ++IMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVAALITALGCGIGRDEYDPDKTRYHNIVIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHIRTLL 419


>gi|23978239|dbj|BAC21114.1| DNA gyrase B subunit [Phormidium sp. IAM M-99]
          Length = 391

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 136/396 (34%), Positives = 215/396 (54%), Gaps = 10/396 (2%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T  + LHHL  EV+DN++DE +AGY   I++S++ +G +TV D+GRGIP   HPK   KS
Sbjct: 1   TGPRGLHHLVYEVVDNSVDEALAGYCKAIDISINADGSVTVTDDGRGIPTGIHPK-TGKS 59

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
            LE ++T LHAGGKF    Y++SGGLHGVGISVVNALS+ + VTV R+  +  Q+F RGI
Sbjct: 60  ALETVMTILHAGGKFGGGGYKVSGGLHGVGISVVNALSEWVEVTVWREKKVHLQRFERGI 119

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
            +  L+ +   + + GT +TF PD  IF +   FD   L    +  AYL+G V+  ++  
Sbjct: 120 AMGELQVEPYPQARTGTSVTFLPDASIFTETTKFDYTTLSGRLRELAYLNGGVRIKFADH 179

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +E +E+      + +++ GG++  +      +  +  E+     E+ G  +  V      
Sbjct: 180 REGSERE-----DVYFYEGGIREDISYMNREKQPLHEEVIFVSGERNGI-QVEVALQWCS 233

Query: 309 CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISA 366
              N  I  + N I T +GGTH  GL+  LTR +   A      +    ++  +++    
Sbjct: 234 DAYNDNIIGFANNIRTVDGGTHLEGLKAVLTRTLNTIARKRNKIKENESNLAGENIREGL 293

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             ++SV + +PEF GQTKTKL + + +  V++ + +    YL   P  +  ++E  ++  
Sbjct: 294 TAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFRPNVSDAIIEKAVQAF 353

Query: 427 EERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIA 461
           +     R  RE+  RK+ +    LPGKLADC+    
Sbjct: 354 KAAEAARHAREMVRRKSVLESSTLPGKLADCASRDP 389


>gi|4894891|gb|AAD32643.1|AF136383_1 gyrase B [Photobacterium angustum]
          Length = 419

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 161/429 (37%), Positives = 248/429 (57%), Gaps = 15/429 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I+ Q +  G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIQRAGHIYQQVYRHGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL          GTRI F P    F +   F    L K  +  ++L+  V    S ++E
Sbjct: 61  APLAVIGDTEK-TGTRIRFWPSEDTFTN-IEFHYDILAKRLRELSFLNSGVSINLSDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   +++ F + GG++ +++    N++ I  ++F   +E+      +VE  + W +
Sbjct: 119 D------GKEDHFMYEGGIRAFVEHLNRNKTPIHPKVFHFDSERDD--GISVEVPMQWND 170

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R ALTR +  + +      K   +   DD      
Sbjct: 171 GFQESIYCFTNNIPQRDGGTHLAGFRGALTRTLNSFMDKESYSKKAKAATSGDDAREGLT 230

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS- 426
            ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +L++NP +A  +   +I+ S 
Sbjct: 231 AVISVKVPDPKFSSQTKDKLVSSEVKAAVESAMNEKLAEFLLENPADAKTVCSKIIDASR 290

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LP KLADC +     +EL+IVEGDSAGGSAKQ RNR N
Sbjct: 291 AREAARKAREMTRRKGALDLAGLPRKLADCQEKDPAVSELYIVEGDSAGGSAKQGRNRKN 350

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ A+GC   R +Y    LRY  +IIMTDAD
Sbjct: 351 QAILPLKGKILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPHKLRYHNIIIMTDAD 410

Query: 546 VDGAHIASL 554
           VDG+HI +L
Sbjct: 411 VDGSHIRTL 419


>gi|19909745|dbj|BAB87068.1| DNA gyrase subunit B [bacterium MBIC3368]
          Length = 296

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 108/304 (35%), Positives = 161/304 (52%), Gaps = 11/304 (3%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
           D   LHH+  EV+DN++DE +AG+A+ + V+L+ +G +TV DNGRGIPV+ HP+    S 
Sbjct: 2   DGSGLHHMVYEVVDNSIDEALAGHADYVTVTLNADGSVTVTDNGRGIPVDIHPE-EGISA 60

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS  L + + R +     +F  G  
Sbjct: 61  AEVIMTQLHAGGKFDSNSYKVSGGLHGVGVSVVNALSTTLDLRIYRNDKEHFIRFHHGES 120

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            +PLE       K GT +TF P P+ F     FD   L    +  A+L+   +   + ++
Sbjct: 121 AAPLEVVGDAPGKSGTEVTFTPSPETFTK-TEFDYDTLEHRLRELAFLNSGARIILTDNR 179

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
                   P  EE Y+ GGL+ +++     +  +  E  T   EK G    TVE A+ W 
Sbjct: 180 -----GVEPHVEELYYEGGLEAFVRYLDRAKHPLIEEPVTMMAEKDGI---TVEVAMWWN 231

Query: 310 EENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVG 368
               E    + N I   +GGTH +G R ALTR +  YA+ +   +   +           
Sbjct: 232 SSYHENVLCFTNNIPQRDGGTHLAGFRAALTRQLTGYADTSGLLKREKVSPTGEDCREGL 291

Query: 369 ILSV 372
              +
Sbjct: 292 SCVL 295


>gi|148971381|gb|ABR20228.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 181/430 (42%), Positives = 255/430 (59%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFDN +Y+ISGGLHGVG+SVVNALS++LH+ +     +  Q +  G P+
Sbjct: 1   EVIMTVLHAGGKFDNDSYKISGGLHGVGVSVVNALSEDLHLVIRINGKVHEQTYHNGDPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL  K      RGT + F+P  +IF +   F+   L K  +  A+L+  ++   S ++ 
Sbjct: 61  APLAAKGDTSE-RGTEVRFKPSAEIFKN-IQFNYDVLAKRLRELAFLNTNIQIFLSDER- 117

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + + F + GGLK +++    N++ I  +IF    EK    R  VE A+ W +
Sbjct: 118 ------TGKTDHFEYHGGLKGFVEDLNRNKTPIHQKIFYFVAEKD---RVIVEVAMQWND 168

Query: 311 ENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
              E    Y N I   +GGTH +G R ALTR +  Y E      K  IS   DDL     
Sbjct: 169 TYQEKLFCYTNNIPQRDGGTHVAGFRSALTRVLNNYIEKEGFAKKEKISTSGDDLREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE+ + + F  YL+++P +A  ++  VIE + 
Sbjct: 229 AVLSVKMPDPKFSSQTKDKLVSSEIKSIVESLMNEKFQEYLLESPQDAKSIVMKVIEAAR 288

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK RE   RK+A+    LPGKLADC +     +ELFIVEG+SAGGSAKQAR+R  
Sbjct: 289 AREAARKARELTRRKSALDVAGLPGKLADCQEEDPSRSELFIVEGESAGGSAKQARDRKT 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDAD 545
           QAVLPL+GKILNV  A  +K+ ++ ++  L+ ALGC    +    + LRY  VIIMTDAD
Sbjct: 349 QAVLPLKGKILNVEKARFDKMLSSAEVATLITALGCGIGREEYSPDKLRYHSVIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|148971277|gb|ABR20176.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 424

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 162/431 (37%), Positives = 234/431 (54%), Gaps = 13/431 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD   Y++SGGLHGVG+S VNALS  L   V  Q   +  +F++G P 
Sbjct: 1   EVIMTVLHAGGKFDKGAYKVSGGLHGVGVSCVNALSKFLIAQVYSQGKTYEIRFAKGKPT 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
             L    +    RGTR+TF PD  IF     FD   L K  +  A+L+  +         
Sbjct: 61  QGLLVLGETEK-RGTRVTFLPDDTIF-SIREFDFDVLAKRFRELAFLNRGITITLK---- 114

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR-GTVEWAIAWC 309
             E+    E+  FY+ GG+ +++Q   + +  +          K G       E A+ W 
Sbjct: 115 -DERDEEKEEALFYYEGGISSFVQYLNQGKEALFDPPIFFSGTKDGDDGPIEFEVALQWN 173

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISA 366
           +     I ++ N I T +GGTH +G   ALTR + +Y       ++  I    +D+    
Sbjct: 174 KGFKESIFTFVNNIPTAQGGTHLTGFSAALTRALNQYIRNKNLLKSDKITLPGEDMREGL 233

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             +LS  +  P+F GQTK +L + D    V+    D    YL ++P  A  +++ V+  +
Sbjct: 234 TAVLSTKVMNPQFEGQTKQRLGNSDVGSVVQQITGDRLGTYLEEHPHIAKIIVDKVLLAA 293

Query: 427 EERLRRRKQREVN-RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
           + R   +K RE+  RK+A+   RLPG+L DC +      E+FIVEGDSAGGSAK AR+R 
Sbjct: 294 QAREAAKKARELTIRKSALDSARLPGELVDCQERDPAKCEIFIVEGDSAGGSAKGARDRR 353

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
            QA+LP+RGKILNV  +  EKI  N+Q+ +++ A GC      +  E LRY ++IIMTDA
Sbjct: 354 FQAILPIRGKILNVEKSRFEKILQNEQVGNIIAAFGCGVGAENFNFEKLRYHRIIIMTDA 413

Query: 545 DVDGAHIASLL 555
           DVDG+HI +LL
Sbjct: 414 DVDGSHIRTLL 424


>gi|84310474|gb|ABC55385.1| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis]
          Length = 409

 Score =  263 bits (673), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 165/418 (39%), Positives = 238/418 (56%), Gaps = 13/418 (3%)

Query: 136 TLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK 195
            LHAGGKFD S Y++SGGLHGVG SVVNALS EL VTV R   I  Q + RG+P++ LE 
Sbjct: 1   VLHAGGKFDGSGYKVSGGLHGVGASVVNALSTELDVTVHRDGKIHRQTYKRGVPVTDLEI 60

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
             +  +  GT   F PDP+IF +   +D   L    +  A+L+  V       +E  E+ 
Sbjct: 61  IGET-DHTGTTTHFVPDPEIFSETTEYDYDLLANRVRELAFLTKGVNITIEDKREGQERK 119

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PE 314
                  +++ GG+K+Y++    ++ ++  E    + EK G    TVE A+ + +     
Sbjct: 120 NE-----YHYEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGI---TVEVALQYNDSYTSN 171

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSV 372
           I S+ N I T EGGTHE+G +  LTR I  YA      +    ++  DD+      I+S+
Sbjct: 172 IYSFTNNINTYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISI 231

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
              +P+F GQTKTKL + +A+   +       + ++++NP  A K+++  +  +  R+  
Sbjct: 232 KHPDPQFEGQTKTKLGNSEARTITDTLFSTAMETFMLENPDAAKKIVDKGLMAARARMAA 291

Query: 433 RKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           +K      RK+A+    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP
Sbjct: 292 KKARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILP 351

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549
           LRGKILNV  A  +KI +N ++  ++ ALG      +  E  RY KV+IMTDADVDG+
Sbjct: 352 LRGKILNVEKARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVVIMTDADVDGS 409


>gi|218516477|ref|ZP_03513317.1| DNA topoisomerase IV subunit B [Rhizobium etli 8C-3]
          Length = 219

 Score =  263 bits (673), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 145/221 (65%), Positives = 183/221 (82%), Gaps = 3/221 (1%)

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           ELFIVEGDSAGGSAKQARNR+NQA+LPLRGKILNVASAG EK   NQQ+ DL+QALGC T
Sbjct: 1   ELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKFGANQQLADLIQALGCGT 60

Query: 525 RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ 584
           R++YR+EDLRYE++I+MTDADVDGAHIASLL+TFFYQEM +L+   HLFL  PPL++ITQ
Sbjct: 61  RAKYRQEDLRYERIIVMTDADVDGAHIASLLITFFYQEMPELVRGGHLFLAVPPLYKITQ 120

Query: 585 GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644
           G KS YA D+ H+ ++++   K GK K+EISRFKGLGEM+ +QLKET MD +KRTLLRV 
Sbjct: 121 GAKSAYARDDNHRAELMQTEFK-GKAKVEISRFKGLGEMMPAQLKETTMDPSKRTLLRVL 179

Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           I++     + T+ +++ LMGTK + RF+FIQERA+F +++ 
Sbjct: 180 IDEV--DFEGTRSAVDDLMGTKPEARFRFIQERAAFAENLD 218


>gi|148470262|gb|ABQ66078.1| gyrase b [uncultured bacterium]
          Length = 419

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 166/430 (38%), Positives = 249/430 (57%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y+ISGGLHGVG+SVVNALSD LH+T+ R        F  G P+
Sbjct: 1   EVIMTVLHAGGKFDSNSYKISGGLHGVGVSVVNALSDNLHLTIWRDGKQHEMDFKVGEPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL+   +  N+ GT++ F     IFG    +    L K  +  ++L+  VK     +++
Sbjct: 61  APLKVTGEANNRTGTKVRFMASSAIFGS-IEYHYEILAKRIRELSFLNNGVKISLCDERD 119

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       E+F F GG+  ++     N+S++    F    EK+G     VE A+ W +
Sbjct: 120 GKE-------EDFAFSGGVAGFVAYINRNKSVLHQVPFHCVGEKEG---MGVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAV 367
                +  + N I   +GG+H S LR  +TR +  Y E T+  +        DD+     
Sbjct: 170 SYQENVQCFTNNIPQRDGGSHLSALRTVMTRTLNNYIEETELAKKAKVVTSGDDMREGLA 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS +    +++ + +    YL++NP +A  +   +IE + 
Sbjct: 230 CVLSVKLPDPKFSSQTKDKLVSSEISPVLQDIVGEALKTYLLENPNDAKIICGKIIEAAR 289

Query: 428 ERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK RE+ R+   +  L LPGKLADC +      EL++VEGDSAGGSAKQ R+R  
Sbjct: 290 AREAARKARELTRRKGVLDGLGLPGKLADCQEKDPALCELYLVEGDSAGGSAKQGRDRKF 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ A+G    + +Y    LRY ++IIMTDAD
Sbjct: 350 QAILPLKGKILNVERARFDKMLSSQEVATLITAMGTGIGKDEYDPNKLRYHRIIIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHIRTLL 419


>gi|257168232|gb|ACV40249.1| DNA gyrase subunit B [Yersinia enterocolitica]
          Length = 279

 Score =  263 bits (672), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 95/288 (32%), Positives = 156/288 (54%), Gaps = 13/288 (4%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
           D   LHH+  EV+DNA+DE +AG+   I V++  +  ++V D+GRGIP   H +    S 
Sbjct: 3   DGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHSDNSVSVQDDGRGIPTGMHDE-EGVSA 61

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L + + R+  +  Q +  G+P
Sbjct: 62  AEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVP 121

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            +PL+   +  ++ GT + F P  + F +   F    L K  +  ++L+  V       +
Sbjct: 122 QAPLKVVAET-DQTGTTVRFWPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDKR 180

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
              E       + F++ GG+K +++   +N++ I  ++F   T K       VE A+ W 
Sbjct: 181 NDKE-------DHFHYEGGIKAFVEYLNKNKNPIHPKVFYFSTMKDDI---GVEVALQWN 230

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
           +     I  + N I   +GGTH  G R A+TR +  Y +     +   
Sbjct: 231 DGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAK 278


>gi|19909747|dbj|BAB87069.1| DNA gyrase subunit B [bacterium MBIC3369]
          Length = 296

 Score =  263 bits (672), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 107/302 (35%), Positives = 160/302 (52%), Gaps = 11/302 (3%)

Query: 72  KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLE 131
             LHH+  EV+DN++DE +AG+A+ + V+L+ +G +TV DNGRGIPV+ HP+    S  E
Sbjct: 1   SGLHHMVYEVVDNSIDEALAGHADYVTVTLNADGSVTVTDNGRGIPVDIHPE-EGISAAE 59

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           +I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS  L + + R +     +F  G   +
Sbjct: 60  VIMTQLHAGGKFDSNSYKVSGGLHGVGVSVVNALSTTLDLRIYRNDKEHFIRFHHGESAA 119

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
           PLE       K GT +TF P P+ F     FD   L    +  A+L+   +   + ++  
Sbjct: 120 PLEVVGDAPGKSGTEVTFTPSPETFTK-TEFDYDTLEHRLRELAFLNSGARIILTDNR-- 176

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
                 P  EE Y+ GGL+ +++     +  +  E  T   EK G    TVE A+ W   
Sbjct: 177 ---GVEPHVEELYYEGGLEAFVRYLDRAKHPLIEEPVTMMAEKDGI---TVEVAMWWNSS 230

Query: 312 NPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
             E    + N I   +GGTH +G R ALTR +  YA+ +   +   +             
Sbjct: 231 YHENVLCFTNNIPQRDGGTHLAGFRAALTRQLTGYADTSGLLKREKVSPTGEDCREGLSC 290

Query: 371 SV 372
            +
Sbjct: 291 VL 292


>gi|225551286|ref|ZP_03772232.1| DNA topoisomerase 4 subunit B (Topoisomerase IV subunitB)
           [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|225379101|gb|EEH01466.1| DNA topoisomerase 4 subunit B (Topoisomerase IV subunitB)
           [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
          Length = 239

 Score =  263 bits (672), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 102/237 (43%), Positives = 136/237 (57%), Gaps = 13/237 (5%)

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           ELF+VEGDSAGGSAK   N+  QA+LPLRGK+LNV  A    +  N+
Sbjct: 4   KLTPAQSKDPTLNELFLVEGDSAGGSAKLGINKKYQAILPLRGKVLNVLKARLVDVLKNE 63

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  +   LG    +++  + L+Y K+IIMTDAD DG+HI  LLLT FY+ M  LIE  +
Sbjct: 64  EIASIFTCLGTGISAEFDLKKLKYHKIIIMTDADTDGSHIQVLLLTLFYRFMRPLIENGN 123

Query: 572 LFLISPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +++  PPL+++T     K  YA D+    ++ +E K       EI R+KGLGEM A QL 
Sbjct: 124 IYIALPPLYKLTNKNTKKFFYAWDDVELDQLKKEQKN-----YEIQRYKGLGEMNADQLF 178

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF--IDDV 684
           ET MD +KR LLRV IN  L      +  IN LMG     R ++I     F  ID++
Sbjct: 179 ETTMDPSKRLLLRVNINDIL----QAERQINTLMGNDVSIRRQWIDNNIDFSVIDEL 231


>gi|148971419|gb|ABR20247.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  263 bits (672), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 166/430 (38%), Positives = 251/430 (58%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFDN++Y++SGGLHGVG+SVVNALS +L + + R    +SQ ++ G P+
Sbjct: 1   EVIMTVLHAGGKFDNNSYKVSGGLHGVGVSVVNALSKKLVLDIWRDGYHYSQTYADGGPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+E+ E  + + GT++ F P   IF     FD   L K  +  ++L+  V+   + +++
Sbjct: 61  TPIEQLEATQ-QTGTQVRFYPSDDIFTGTI-FDFEILAKRLRELSFLNSGVRIVLTDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   ++ EF   GGL  ++      ++ ++        E  G    +VE A+ W +
Sbjct: 119 -------DKRHEFEHVGGLSEFVHYINAGKTGLNEVFHFTSEENDGI---SVEVALQWTD 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
               ++  + + I   +GGTH SG R ALTR +  Y +      K  +++  DD      
Sbjct: 169 SYNEKVLCFTDNIPQKDGGTHLSGFRSALTRCLNSYMDSENLMKKEKVAVTGDDAREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            I+SV + +P+F+ QTK KLVS + +  VE+A+ D F  YL++NP  A  +   +I+   
Sbjct: 229 AIISVKVPDPKFSSQTKDKLVSGEVKPAVESAMHDKFSAYLLENPNAAKGIAGKIIDAAR 288

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RKT +    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR  
Sbjct: 289 AREAARKAREMTRRKTTLDIAGLPGKLADCQEKDPAISELYIVEGDSAGGSAKQGRNRKM 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALG      +Y  + LRY K+IIMTDAD
Sbjct: 349 QAILPLKGKILNVERARFDKMLSSQEVGTLITALGTGIGPDEYNPDKLRYHKIIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|165968988|gb|ABY76050.1| topoisomerase IV subunit ParE [Parachlamydia acanthamoebae]
          Length = 477

 Score =  263 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 145/507 (28%), Positives = 241/507 (47%), Gaps = 47/507 (9%)

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
             ++ ++ G K+++  ++ S GL+GVG   VNALS    V   R+       FS+G  + 
Sbjct: 2   DCVSQINTGAKYNDDVFQFSVGLNGVGTKAVNALSSHFLVRSHREGKSMEAVFSQGKLIR 61

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
             EK +K     GT + F PD +IF     F+   + K     AYL+  +   ++     
Sbjct: 62  --EKSQKTSEPDGTYVEFIPDKEIFKKFR-FEPEYIQKRLWHYAYLNTGLILEYNGQDIY 118

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
           +E              GL   L  ++    L     + GK          +E+A    + 
Sbjct: 119 SE-------------NGLLDLLNEEVTEDRLYEPLYYRGK---------LLEFAFLHTQS 156

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
                 S+ N   T +GGTH S  R  + +G+ +Y+     K+  +    DL    VG +
Sbjct: 157 YGESYFSFVNGQYTSDGGTHLSAFREGILKGVNEYS-----KK--NFQGVDLREGIVGTV 209

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           +V I++P F  QTK KL + + +  +   ++D   + L +N   A  ++E ++   + R 
Sbjct: 210 AVRIKDPVFESQTKNKLGNTELRGPLVQEVKDAVVNMLYKNSSTANSIIERIVFNEKLRK 269

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHG------TELFIVEGDSAGGSAKQARNR 484
                ++  ++   +      KL DC  +          T +F+ EGDSA  S   +R+ 
Sbjct: 270 ELAAVKKEAKEKQKKISFKIPKLRDCKYHAQDKADVGEKTMIFLTEGDSASASIVASRDP 329

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QAV  LRGK LNV     +++  N+++ +L+ AL          E+LRY+KVI+ TDA
Sbjct: 330 LTQAVFSLRGKPLNVHGMKIDQLYKNEEMFNLMSALNIE----DDIENLRYQKVILATDA 385

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           DVDG HI +LL+TFF      L+   HLF++  PLF++    K++Y + EE + K +++ 
Sbjct: 386 DVDGMHIRNLLITFFLTYFEGLVLNGHLFILETPLFKVRNREKTLYCYSEEERDKAIKQL 445

Query: 605 KKHGKGKIEISRFKGLGEMLASQLKET 631
           KK     IE++RFKGLGE+  ++ K+ 
Sbjct: 446 KK----GIEVTRFKGLGEISPNEFKQF 468


>gi|148470230|gb|ABQ66062.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  263 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 160/428 (37%), Positives = 238/428 (55%), Gaps = 13/428 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFDNS Y++SGGLHGVG+SVVNALS+ L + + +   +  Q + +G P 
Sbjct: 1   EVIMTVLHAGGKFDNSLYKVSGGLHGVGVSVVNALSETLQLEIHQNGLVHRQTYHKGNPE 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    + ++ RGT I F PD  I           L    +  A+L+  +      ++ 
Sbjct: 61  APLAVVGETQS-RGTTIRFWPDMTIMET-DQLSFETLAHRFRELAFLNPVMTIHLKEEET 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
           + E       E F+F GG+++++    EN+ ++   +   K  + G  +  V +      
Sbjct: 119 LRE-------EAFHFEGGIQSFVAFLNENKKILHDVLSFRKQLEDG-AQFEVAFQYQEST 170

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
           EN  +  + N I T EGGTH  G R ALT+ I ++    Q  +   +  +D+      ++
Sbjct: 171 ENETVLGFANNIHTREGGTHVRGFRTALTKTINEFIREKQLNKGEEVRGEDVREGLTAVI 230

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV I  P+F GQTK KL S      +E+ L +       ++P+ A K+ E  +  ++ R 
Sbjct: 231 SVRISNPQFEGQTKGKLGSSWVAGAMESFLSEALQDKFDEDPLVAKKVAEKAVLTAQARE 290

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK ++   RK  +    LPGKLADC ++    +EL+IVEGDSAGGSAKQ R+R  QA+
Sbjct: 291 AARKAKDLAKRKNVLEGSNLPGKLADCQESDPAKSELYIVEGDSAGGSAKQGRDRRFQAI 350

Query: 490 LPLRGKILNVASAG-SEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVD 547
           LPL+GKILNV  +   EK   N ++  L+ A+GC    +   E+ LRY K+IIMTDADVD
Sbjct: 351 LPLKGKILNVEKSRGIEKFITNDEVRALITAVGCGLGDEEFSEKKLRYHKIIIMTDADVD 410

Query: 548 GAHIASLL 555
           G+HI +LL
Sbjct: 411 GSHIRTLL 418


>gi|84310486|gb|ABC55391.1| DNA gyrase subunit B [Bacillus subtilis subsp. spizizenii]
          Length = 409

 Score =  263 bits (671), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 166/418 (39%), Positives = 238/418 (56%), Gaps = 13/418 (3%)

Query: 136 TLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK 195
            LHAGGKFD S Y++SGGLHGVG SVVNALS EL VTV R   I  Q + RG+P+S LE 
Sbjct: 1   VLHAGGKFDGSGYKVSGGLHGVGASVVNALSTELVVTVHRDGKIHRQTYKRGVPVSDLEI 60

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
             +  +  GT   F PDP+IF +   +D   L    +  A+L+  V       +E  E+ 
Sbjct: 61  IGET-DHTGTTTHFVPDPEIFTETTEYDYDLLANRVRELAFLTKGVNITIEDKREGQERK 119

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PE 314
                  +++ GG+K+Y++    ++ ++  E    + EK G    TVE A+ + +     
Sbjct: 120 NE-----YHYEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGI---TVEVALQYNDSYTSN 171

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSV 372
           I S+ N I T EGGTHE+G +  LTR I  YA      +    ++  DD+      I+S+
Sbjct: 172 IYSFTNNINTYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISI 231

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
              +P+F GQTKTKL + +A+   +       + ++++NP  A K+++  +  +  R+  
Sbjct: 232 KHPDPQFEGQTKTKLGNSEARTITDTLFSTAMETFMLENPDAAKKIVDKGLMAARARMAA 291

Query: 433 RKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           +K      RK+A+    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP
Sbjct: 292 KKARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILP 351

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549
           LRGKILNV  A  +KI +N ++  ++ ALG      +  E  RY KV+IMTDADVDG+
Sbjct: 352 LRGKILNVEKARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVVIMTDADVDGS 409


>gi|148470298|gb|ABQ66096.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 169/430 (39%), Positives = 244/430 (56%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALS  L +T+ R    +  +F  G P 
Sbjct: 1   EVIMTVLHAGGKFDGNSYKVSGGLHGVGVSVVNALSSWLKLTIHRGGKRYFMEFRHGDPT 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL        +RGT + F    + F     F    L K  +  ++L+  V       + 
Sbjct: 61  APLAMVGN-SERRGTEVHFLASAETFDT-VEFHYDILAKRLRELSFLNHGVSIFLKDMR- 117

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   ++E F F GG++ +++     RS+I   IF    E+ G    TVE AI W E
Sbjct: 118 ------TDQQETFSFSGGVRGFVEYLNRTRSVIHPSIFHASGERDG---MTVEVAIQWNE 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                +  + N I   +GGTH + LR ALTR + ++    +   K  I    DD+     
Sbjct: 169 TYQENVLCFTNNIPQRDGGTHLTALRAALTRTMNQFMVDNEIAKKSKIETSGDDMREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE+ + D    +L++NP E   ++  +IE + 
Sbjct: 229 CVLSVKVPDPKFSSQTKEKLVSSEVRPVVEDVVSDRLKDFLLENPQETKVIIGKIIEAAR 288

Query: 428 ERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK RE+ R+      L LPGKLADC +      EL++VEGDSAGGSAKQ R+R  
Sbjct: 289 AREAARKAREMTRRKGVFDGLGLPGKLADCQEKDPALCELYLVEGDSAGGSAKQGRDRKF 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q+I+ L+ ALG      +Y  E +RY ++IIMTDAD
Sbjct: 349 QAILPLKGKILNVERARFDKLLSSQEIVTLITALGTGIGAEEYMPEKVRYHRIIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|222103617|gb|ACM44317.1| GyrB [Shewanella aquimarina]
          Length = 419

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 165/430 (38%), Positives = 249/430 (57%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L +T+ R   ++ Q ++ G P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKLTIRRDGKLYEQFYTMGEPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+ +  +  N  GT I F P  + F D   F    L K  +  ++L+  V      +++
Sbjct: 61  APIAEIGEATN-TGTEIRFWPSAETFSD-TQFHFDILAKRVRELSFLNSGVGIRLIDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             +       E F + GG+  ++     N++ ++ EIF    E++     TVE A+ W +
Sbjct: 119 NKD-------EFFKYEGGISAFVDYLNLNKTPVNKEIFHFVQERED--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R ALTR +  Y +      K   S   DD      
Sbjct: 170 GFQENIFCFTNNIPQRDGGTHLAGFRSALTRNLNSYMDKEGFNKKGKTSATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP EA  ++  +I+   
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGEKLGDYLLENPNEAKLIVGKIIDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARKAREMTRRKGALDLGGLPGKLADCQEKDPALSEIYIVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  +  RY  ++IMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYDPDKTRYHNIVIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHIRTLL 419


>gi|18916423|dbj|BAB85505.1| DNA gyrase subunit B [Bradyrhizobium japonicum]
 gi|18916426|dbj|BAB85506.1| DNA gyrase subunit B [Bradyrhizobium japonicum]
          Length = 303

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 114/313 (36%), Positives = 173/313 (55%), Gaps = 12/313 (3%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DNA+DE +AG+A  ++V L+ +  +TV D+GRGIPV+ H K   
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHATRVDVVLNADNSVTVRDDGRGIPVDIH-KGEG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALS +L + + R +     +F+ 
Sbjct: 60  ISAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAH 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  ++PL+       +RGT +TF   P+ F +   +D A L    +  A+L+  V    S
Sbjct: 120 GDAVAPLKVVGDAPGRRGTEVTFLASPETFKN-IEYDFATLEHRLRELAFLNSGVNIILS 178

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   EK      EE ++ GG++ +++    N+  I       + E  G     VE A+
Sbjct: 179 DMRHAVEKR-----EEMHYSGGVEEFVKYLDRNKKAIVPAPIMVRAEANGI---GVEAAL 230

Query: 307 AWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
            W +   E    + N I   +GGTH +G R ALTR +  YAE    K  I++  DD    
Sbjct: 231 WWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQVNGYAEANAKKEKIALTGDDCREG 290

Query: 366 AVGILSVFIREPE 378
              +LSV + +P+
Sbjct: 291 LTAVLSVKVPDPK 303


>gi|58761293|gb|AAW82361.1| DNA gyrase subunit B [Dehalococcoides sp. TM-EtOH]
          Length = 395

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 152/408 (37%), Positives = 231/408 (56%), Gaps = 17/408 (4%)

Query: 85  AMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144
           ++DE +AG  + I+V +  +G ++V DNGRGIP++ HP     S LE ++T LHAG KF 
Sbjct: 1   SVDEAMAGVCDRIKVIIYKDGSVSVEDNGRGIPIDIHP-VTKISALETVMTVLHAGAKFG 59

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
             TY++SGGLHGVG SVVNAL++   V V R   I+ Q + RG P +PLE+   V +  G
Sbjct: 60  GKTYQVSGGLHGVGASVVNALAEWTTVKVRRNGKIYQQSYQRGKPSTPLEEVG-VSDGSG 118

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F+ D +IF     +D   L    +  AYL+  ++     ++   E+        +Y
Sbjct: 119 TTTIFKADSQIFST-TEYDFETLTDRLREIAYLNKGLEVYIYDEQSDQERT-------YY 170

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTIL 323
           F GG+  +++    NR +   +      +   T    +E AI + +   +   ++ N + 
Sbjct: 171 FEGGITGFVRHLNRNREVRHRQPIYITKKSDSTI---LEVAIQYNDGYSDSTLTFANCVN 227

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T +GGTH +G R ALTR    YA  ++  +    +++ DD+    V I+SV + EP+F G
Sbjct: 228 TIDGGTHLTGFRSALTRAFNDYAHKSKFLKDTDPNLMGDDVREGIVAIVSVKLPEPQFEG 287

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTK KL +++ +  VE+A+ +    YL ++P +  ++LE  I  ++ R   RK R+ + R
Sbjct: 288 QTKGKLGNIEIKSFVESAVTEQLSLYLEEHPDDTKRILEKCITAAKAREAARKARDLIIR 347

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
           K+A+    LPGKLADCS+  A   ELF+VEGDSAGGSAKQ RNR  QA
Sbjct: 348 KSALDTGTLPGKLADCSERDASLCELFLVEGDSAGGSAKQGRNRRFQA 395


>gi|148971385|gb|ABR20230.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 176/430 (40%), Positives = 248/430 (57%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFDN +Y+ISGGLHGVG+SVVNALS+ELH+ +     I+ Q +  G P 
Sbjct: 1   EVIMTVLHAGGKFDNDSYKISGGLHGVGVSVVNALSEELHLVIRMNGKIYEQYYHHGEPA 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    +     GT + F+P  + F +   F    L K  +  A+L+  ++   + ++ 
Sbjct: 61  APLATIGESSEH-GTEVRFKPSAETFKN-IQFHYDVLAKRLRELAFLNSSIRIYLTDER- 117

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + E F + GGLK +++    N++ I S+IF    EK      TVE A+ W +
Sbjct: 118 ------TGKNEIFEYHGGLKGFVEDLNRNKTPIHSKIFYFNAEKDKV---TVEVAMQWND 168

Query: 311 ENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAV 367
              E    Y N I   +GGTH +G R  LTR +  Y E     +        DDL     
Sbjct: 169 TYQEKLFCYTNNIPQRDGGTHVAGFRSGLTRVVNNYIEKEGYAKREKVATSGDDLREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV +  P+F+ QTK KLVS + +  VE+ + + F  +L++NP +A  ++  VIE + 
Sbjct: 229 AVLSVKMPNPKFSAQTKDKLVSSEIKSIVESLMNEKFQEFLMENPQDAKGIVSKVIEAAR 288

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK RE   RK+A+    LPGKLADC +     +ELFIVEGDSAGGSAKQAR+R  
Sbjct: 289 AREAARKARELTRRKSALDVAGLPGKLADCQEEDPTKSELFIVEGDSAGGSAKQARDRKT 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDAD 545
           QAVLPL+GKILNV  A  +K+ ++ ++  L+ ALGC    +    + LRY  +IIM DAD
Sbjct: 349 QAVLPLKGKILNVEKARFDKMLSSAEVATLITALGCGIGREEYSPDKLRYHSIIIMIDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|148470238|gb|ABQ66066.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 162/430 (37%), Positives = 246/430 (57%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +LH+ + R   +  Q++  G P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSSKLHLIINRAGQVHEQEYHHGDPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            PL    +  +  GT + F P  ++   +  F+   L +  +  ++L+  V+     ++ 
Sbjct: 61  YPLRVIGET-DSSGTTVRFWPS-ELTFSQTIFNVEILARRLRELSFLNAGVRIVLRDERI 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E         + + GGL  +++   E ++ ++         + G     VE A+ W E
Sbjct: 119 NLE-------HVYDYEGGLSEFVKYINEGKTHLNEIFHFTADTENGI---GVEVALQWNE 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                +  + N I  ++GGTH +G R ALTRG+ +Y E      K  +++  DD      
Sbjct: 169 SYQENVRCFTNNIPQEDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERS 426
            I+SV + +P+F+ QTK KLVS + +  VE A+   F  YL++NP  A  +   +I    
Sbjct: 229 AIISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAAR 288

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK+A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  
Sbjct: 289 ARDAARKAREMTRRKSALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKM 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY K+IIMTDAD
Sbjct: 349 QAILPLKGKILNVERARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|295979459|dbj|BAJ07402.1| DNA gyrase subunit B [alpha proteobacterium MBIC3818]
 gi|295979461|dbj|BAJ07403.1| DNA gyrase subunit B [alpha proteobacterium MBIC3819]
          Length = 307

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 118/317 (37%), Positives = 177/317 (55%), Gaps = 14/317 (4%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DNA+DE +AG+A+ + V+L+ +G +TV DNGRGIP + HP+   
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHADHVTVTLNPDGSVTVSDNGRGIPTDLHPE-EG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALS +L + + R +      F+ 
Sbjct: 60  VSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSTKLDLRIWRNDQEHFMTFAH 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  + PLE       K+GT +TF P P+ F     FD A L    +  A+L+   +   +
Sbjct: 120 GDAVGPLEVVGPANGKKGTEVTFLPSPETFTK-TEFDFATLEHRLRELAFLNSGARIILT 178

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             + + +       EE Y+ GGL+ +++     +  +       + EK G    TVE A+
Sbjct: 179 DKRGVED-----VVEELYYEGGLEAFVRYLDRAKHPLIETPIAVRAEKDGI---TVEAAM 230

Query: 307 AWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W +   E    + N I   +GGTH +G R ALTR +  YAE T    K  +S+  DD  
Sbjct: 231 WWNDSYHEQVLCFTNNIPQRDGGTHLAGFRGALTRQVTGYAESTGLMKKEKVSLSGDDCR 290

Query: 364 ISAVGILSVFIREPEFA 380
                +LSV + +P+F+
Sbjct: 291 EGLTCVLSVKVPDPKFS 307


>gi|2196790|gb|AAB80812.1| DNA gyrase beta-subunit [Shewanella putrefaciens]
          Length = 419

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 162/430 (37%), Positives = 245/430 (56%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L +T+ R   ++ Q ++ G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSRKLQMTIRRAGKVYEQFYTHGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+++        GT I F P    F D   F    L K  +  A+L+  V      +++
Sbjct: 61  APIKEIGDATK-TGTEIRFWPSEDTFSD-VEFHFEILAKRVRELAFLNSGVGIRLIDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + E F + GG+  ++     N++ ++ E+F    E+      TVE A+ W +
Sbjct: 119 N-------KNEFFKYEGGISAFVDYLNRNKTPVNKEVFHFMQERDD--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                I  + N I   +GGTH  G R ALTR +  Y E      K   +   DD      
Sbjct: 170 GYQENIFCFTNNIPQRDGGTHLVGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +  + YL++NP +A  ++  +++   
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEKLNDYLLENPADAKLIVGKIVDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC     +Y  +  RY  +IIMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGADEYNPDKTRYHNIIIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHILTLL 419


>gi|148971445|gb|ABR20260.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 156/430 (36%), Positives = 239/430 (55%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALSD L +T+ R   I  Q +  G P+
Sbjct: 1   EVIMTVLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDSLELTIRRDGKIHYQMYRLGNPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            PL       ++ GT + F P PKIF +   F    L +  +  ++L+  V+     D++
Sbjct: 61  EPLTVIG-TTDETGTDVHFTPSPKIFTNTV-FHYDLLARRLRELSFLNSGVRIVLRDDRD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
           + E       + F + GG+  +++    N++ +  +      EK+G    +VE A+ W +
Sbjct: 119 LKE-------DVFEYQGGIAAFVRHLNRNKTPLHEKXIYISAEKEGV---SVELAMQWND 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                   Y N I   +GGTH +GLR A+TR + ++ E      K  IS   DD      
Sbjct: 169 SYQENTFCYTNNIPQRDGGTHLAGLRAAMTRTLNQHIENLALAKKDKISPTGDDAREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            +LSV + +P+F+ QTK KLVS + +  VE+ + +    +L +NP +A  +   +I+   
Sbjct: 229 AVLSVKVPDPKFSSQTKEKLVSSEVKGIVESIVNERLLDFLQENPSDARVIASKIIDAAR 288

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +      EL++VEG   G    QAR+R  
Sbjct: 289 AREAARKAREMTRRKGALDIAGLPGKLADCQERDPSLCELYLVEGRLCGRLCSQARDRRF 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++ ++  L+ ALG    +  +  + LRY ++IIMTDAD
Sbjct: 349 QAILPLKGKILNVERARFDKMLSSAEVGTLITALGTGIGKDDFDIKKLRYHRIIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|288562964|pdb|3G7E|A Chain A, Crystal Structure Of E. Coli Gyrase B Co-Complexed With
           Inhibitor
          Length = 203

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 83/204 (40%), Positives = 124/204 (60%), Gaps = 3/204 (1%)

Query: 54  GLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDN 112
           GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V++  +  ++V D+
Sbjct: 1   GLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDD 60

Query: 113 GRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVT 172
           GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + 
Sbjct: 61  GRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELV 119

Query: 173 VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQ 232
           + R+  I  Q +  G+P +PL    +     GT + F P  + F +   F+   L K  +
Sbjct: 120 IQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNVTEFEYEILAKRLR 178

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYG 256
             ++L+  V       ++  E + 
Sbjct: 179 ELSFLNSGVSIRLRDKRDGKEDHF 202


>gi|2267066|gb|AAB63498.1| gyrase B subunit [Pseudoalteromonas espejiana]
          Length = 423

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 160/432 (37%), Positives = 253/432 (58%), Gaps = 16/432 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L +T+ R+  +  Q +S G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLTLTIRREGKLHEQTYSMGVPN 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL       +  GT + F P  + F +   F    L K  +  ++L+  V    + ++E
Sbjct: 61  APLAIIGDA-DTTGTELRFWPSGETFTN-LDFHYDILAKRLRELSFLNSGVSIILTDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + + F + GG++ +++    N++ +   +F    E++     +VE ++ W +
Sbjct: 119 ------ENKSDHFKYEGGIQAFVEYLNRNKTPVHKGVFHFTHERE-EDGISVEVSMQWND 171

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYA----ELTQNKRAISIISDDLMIS 365
                I  + N I   +GGTH +G R ALTR +  Y        + K   +   DD    
Sbjct: 172 GFQENIYCFTNNIPQRDGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREG 231

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE- 424
              ++SV + +P+F+ QTK KLVS + +  VE A+ + F  +L++NP++A  ++  +I+ 
Sbjct: 232 LTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQAMAEKFSDFLLENPMDAKIVVGKIIDA 291

Query: 425 RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
                  R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR
Sbjct: 292 ARAREAARKAREMTRRKGAMDLAGLPGKLADCQEKDPSLSELYIVEGDSAGGSAKQGRNR 351

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTD 543
            NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  E +RY  +IIMTD
Sbjct: 352 KNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYDPEKIRYHSIIIMTD 411

Query: 544 ADVDGAHIASLL 555
           A++DG+HI +LL
Sbjct: 412 AELDGSHIRTLL 423


>gi|148616440|gb|ABQ96963.1| GyrB [Nocardiopsis alba]
          Length = 424

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 162/430 (37%), Positives = 238/430 (55%), Gaps = 10/430 (2%)

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
           +E+I+T LHAGGKFD  +Y +SGGLHGVGISVVNALS  L V + +Q  ++ Q +    P
Sbjct: 1   IEVIMTVLHAGGKFDGKSYAVSGGLHGVGISVVNALSTALDVEIRQQGHVWRQHYEMTAP 60

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
              L K  +  ++ GT+ITF  D  IF     F    L +  Q  A+L+  +      ++
Sbjct: 61  TGELVK-GEATDETGTQITFWADGDIFETTT-FSFETLARRMQEMAFLNKGLSITIRDER 118

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
                   P    F++  GL  Y++     +    + I + + E +G     VE A+ W 
Sbjct: 119 -PEHTDDGPVVNTFHYEEGLSDYVRHINNKKEPAHASIISFEEEGEGI---AVEIAMQWN 174

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISA 366
           +     + ++ NTI T EGGTHE G R ALT  + +YA   +    +  ++  DD+    
Sbjct: 175 QSYTSSVHTFANTINTAEGGTHEEGFRSALTTLVNRYARDQRLLRDKDDNLTGDDIREGL 234

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             I+SV + +P+F GQTKTKL + +A+  V+    +    +  +NP EA  ++    + +
Sbjct: 235 TAIISVKLADPQFEGQTKTKLGNTEAKSFVQKVTNEHLRDWFERNPGEAKDIVSRASQAA 294

Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
             R+  R+ R+   RKT +    LPGKL+DC        E++IVEGDSAGGSAK  RN  
Sbjct: 295 RARVAARQARDLTRRKTLLETTSLPGKLSDCQSTDPEECEVYIVEGDSAGGSAKGGRNPH 354

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545
           NQA+LP+RGKILNV  A  ++I  NQ++  ++ ALG      +  E LRY K+I+MTDAD
Sbjct: 355 NQAILPIRGKILNVEKARIDRILKNQEVQAIITALGTGIHEDFDAEKLRYHKIILMTDAD 414

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 415 VDGSHIRTLL 424


>gi|148470211|gb|ABQ66053.1| gyrase b [uncultured bacterium]
          Length = 421

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 164/430 (38%), Positives = 251/430 (58%), Gaps = 14/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD   Y++SGGLHGVG SVVNALS+   V V R   +++ +F RG+  
Sbjct: 1   EVIMTVLHAGGKFDGGGYKVSGGLHGVGASVVNALSERTEVEVCRDGKVYAMEFERGVKT 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           S L+   K R K GT++TF+PD +IF D   FD  R++   +  AYL+  +      ++ 
Sbjct: 61  SELKTIGK-RQKTGTKVTFKPDAQIFPDIT-FDYDRVVVRCRELAYLNEGLAFYIEDER- 117

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG-THRGTVEWAIAWC 309
                   +K+EF +  G+  +++   E + +I +++   + E+ G  +  +V+ A+ + 
Sbjct: 118 ------TGKKDEFKYTRGIIQFVKQLNEGKEVIHNQVIYLEREEPGKDNPMSVQVAMQYN 171

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISA 366
           +     + S+ N I T  GGTH SG   ALTR +  YA+     +        DDL    
Sbjct: 172 DGYAESLHSFANNINTPGGGTHLSGFETALTRTLNFYAKSNNLIKDEKEMPNGDDLREGL 231

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             I+S+ +  P+F GQTK KL + + +  V NA+ +    +L ++P +A ++++  +   
Sbjct: 232 SAIVSIKVPNPQFEGQTKDKLGNGEVEGFVANAVNETLGTWLEEHPADAKRIIQKGLLAR 291

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
           + R   RK RE+ RK A+    LPGKLADCS      TEL+IVEG SAGG+AK  R+R  
Sbjct: 292 QAREAARKARELTRKGALSSGGLPGKLADCSSRDMESTELYIVEGRSAGGTAKAGRDRVF 351

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDAD 545
           QA+LP++GKILNV  A  +K+ ++++I  +VQAL C   +   +   LR  K++IMTDAD
Sbjct: 352 QAILPIKGKILNVEKARVDKMLSHEEIRTIVQALACGLGASDMDLSKLRCGKLVIMTDAD 411

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 412 VDGSHIRTLL 421


>gi|68138882|gb|AAY86030.1| GyrB [Burkholderia vietnamiensis]
          Length = 561

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 139/393 (35%), Positives = 216/393 (54%), Gaps = 15/393 (3%)

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            +    L K  +  ++L+  V+   +  +   E         F F GG+K +++   + +
Sbjct: 5   EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD-------FAFAGGVKGFVEYINKTK 57

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + +   +F    EK G     VE A+ W +     +  + N I   +GGTH +GLR A+T
Sbjct: 58  TNLHPTVFFANGEKDGV---GVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMT 114

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I KY    +   K  +    DD+      +LSV + EP+F+ QTK KLVS + +  VE
Sbjct: 115 RVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVE 174

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADC 456
             +    + +L++ P +A  +   ++E +  R   RK RE+ R+   +  + LPGKLADC
Sbjct: 175 EVVAKALEEFLLETPTDAKIICGKIVEAARARDAARKAREMTRRKGVLDGVGLPGKLADC 234

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+LNV  A  +K+ +++QI+ L
Sbjct: 235 QEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTL 294

Query: 517 VQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           V ALGC         + LRY ++IIMTDADVDGAHI +LLLTFFY++M +++E+ ++++ 
Sbjct: 295 VTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPEMVERGYVYIA 354

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
            PPL++I  G    Y  D+      +      G
Sbjct: 355 QPPLYKIKAGKDERYLKDDAELNAHMLRLALQG 387


>gi|84310484|gb|ABC55390.1| DNA gyrase subunit B [Bacillus vallismortis]
          Length = 409

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 166/418 (39%), Positives = 238/418 (56%), Gaps = 13/418 (3%)

Query: 136 TLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK 195
            LHAGGKFD S Y++SGGLHGVG SVVNALS EL VTV R   I  Q + RG+P+S LE 
Sbjct: 1   VLHAGGKFDGSGYKVSGGLHGVGASVVNALSTELVVTVHRDGKIHRQTYKRGVPVSDLEI 60

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
             +  +  GT   F PDP+IF +   +D   L    +  A+L+  V       +E  E+ 
Sbjct: 61  IGET-DHSGTTTRFFPDPEIFTETTEYDYDLLANRVRELAFLTKGVNITIEDKREGQERK 119

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PE 314
                  +++ GG+K+Y++    ++ ++  E    + EK G    TVE A+ + +     
Sbjct: 120 NE-----YHYEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGI---TVEVALQYNDSYTSN 171

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSV 372
           I S+ N I T EGGTHE+G +  LTR I  YA      +    ++  DD+      I+S+
Sbjct: 172 IYSFTNNINTYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISI 231

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
              +P+F GQTKTKL + +A+   +       + ++++NP  A K+++  +  +  R+  
Sbjct: 232 KHPDPQFEGQTKTKLGNSEARTITDTLFSTAMETFMLENPDAAKKIVDKGLMAARARMAA 291

Query: 433 RKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           +K      RK+A+    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP
Sbjct: 292 KKARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILP 351

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549
           LRGKILNV  A  +KI +N ++  ++ ALG      +  E  RY KV+IMTDADVDG+
Sbjct: 352 LRGKILNVEKARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVVIMTDADVDGS 409


>gi|295979445|dbj|BAJ07395.1| DNA gyrase subunit B [Rhodopseudomonas palustris]
          Length = 305

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 119/314 (37%), Positives = 171/314 (54%), Gaps = 12/314 (3%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DNA+DE +AG+A  +EV L+ +G +TV D+GRGIPV+ H K   
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHATRVEVILNADGSVTVRDDGRGIPVDIH-KGEG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALS  L + V R       +F+ 
Sbjct: 60  ISAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSRLLLRVWRDGKEHFIEFAH 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  ++PL        KRGT +TF    + F +   +D A L    +  A+L+  V    S
Sbjct: 120 GEAVAPLAVVGDAGGKRGTEVTFYASAETFTN-VEYDFATLEHRLRELAFLNSGVNILLS 178

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   EK      EE  + GG+  +++    N+  I     T   E  G    TVE A+
Sbjct: 179 DLRHGIEKR-----EEMRYEGGVVEFVKYLDRNKKAIVPMPITILAEMNGI---TVECAL 230

Query: 307 AWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
            W +   E    + N I   +GGTH +G R ALTR +  YA++   K  I++  DD    
Sbjct: 231 WWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQVNGYADVIAKKEKITLTGDDCREG 290

Query: 366 AVGILSVFIREPEF 379
              +LSV + +P+F
Sbjct: 291 LTAVLSVKVPDPKF 304


>gi|295979443|dbj|BAJ07394.1| DNA gyrase subunit B [Rhodopseudomonas palustris]
 gi|295979447|dbj|BAJ07396.1| DNA gyrase subunit B [Rhodopseudomonas palustris]
          Length = 304

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 119/314 (37%), Positives = 171/314 (54%), Gaps = 12/314 (3%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DNA+DE +AG+A  +EV L+ +G +TV D+GRGIPV+ H K   
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHATRVEVILNADGSVTVRDDGRGIPVDIH-KGEG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALS  L + V R       +F+ 
Sbjct: 60  ISAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSRLLLRVWRDGKEHFIEFAH 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  ++PL        KRGT +TF    + F +   +D A L    +  A+L+  V    S
Sbjct: 120 GEAVAPLAVVGDAGGKRGTEVTFYASAETFTN-VEYDFATLEHRLRELAFLNSGVNILLS 178

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   EK      EE  + GG+  +++    N+  I     T   E  G    TVE A+
Sbjct: 179 DLRHGIEKR-----EEMRYEGGVVEFVKYLDRNKKAIVPMPITILAEMNGI---TVECAL 230

Query: 307 AWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
            W +   E    + N I   +GGTH +G R ALTR +  YA++   K  I++  DD    
Sbjct: 231 WWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQVNGYADVIAKKEKITLTGDDCREG 290

Query: 366 AVGILSVFIREPEF 379
              +LSV + +P+F
Sbjct: 291 LTAVLSVKVPDPKF 304


>gi|56409808|emb|CAH65724.1| DNA gyrase [Vibrio aestuarianus]
          Length = 421

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 164/430 (38%), Positives = 249/430 (57%), Gaps = 14/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+S VNALS+++ +T+ R+  IF Q +  G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSXVNALSEKVELTIKRKGEIFQQIYHHGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    K     GTRI F P  + F +   F    L K  +  ++L+  V    + ++E
Sbjct: 61  APLAVIGKTEE-TGTRIRFWPSEETFTN-IEFHYEILAKRLRELSFLNSGVSIKLTDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + + F F GG++ +++    N++ I  +IF     ++     TVE A+ W +
Sbjct: 119 ------EDKSDHFMFEGGIRAFVEHLNRNKTPIHQKIFYFDHTRE-EDGITVEVAMQWND 171

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR +  + +      K   +   DD      
Sbjct: 172 GFQEGVYCFTNNIPQRDGGTHLAGFRGALTRTLNNFMDKEGYSKKAQAATSGDDAREGLT 231

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +L++NP EA  +   +I+   
Sbjct: 232 AVVSVKVPDPKFSSQTKDKLVSSEVKSXVESAMSEKLSEFLIENPTEAKIVCGKIIDAAR 291

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR N
Sbjct: 292 AREAARKARDMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKN 351

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC     +Y  + LRY  +IIM DAD
Sbjct: 352 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGXDEYNPDKLRYHNIIIMXDAD 411

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 412 VDGSHIRTLL 421


>gi|295979561|dbj|BAJ07453.1| DNA gyrase subunit B [Chromobacterium sp. MBIC3901]
          Length = 303

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 109/313 (34%), Positives = 172/313 (54%), Gaps = 16/313 (5%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
           D   LHH+  EV+DNA+DE +AG+A+ I+V+++ +  ++V DNGRGIP + HP+   +S 
Sbjct: 4   DGTGLHHMVFEVLDNAIDEALAGHADTIKVTINPDNSVSVEDNGRGIPTDIHPE-EGRSA 62

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            E+I+T LHAGGKFD+++Y+ISGGLHGVG+SVVNALSD L + + R   +   +F RG  
Sbjct: 63  AEVIMTILHAGGKFDSNSYKISGGLHGVGVSVVNALSDWLKLKIWRDGKVHEMEFRRGDA 122

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
           ++PL         RGT +TF    + F     F    L K  +  ++L+  V       +
Sbjct: 123 VAPLTVTGHTS-HRGTEVTFFASVETF-GHIEFHFDILAKRIRELSFLNQGVGIQLIDKR 180

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
              E       E F F GG+  +++    N++++  + F G  EK G    TVE A+ W 
Sbjct: 181 SGKE-------ENFAFSGGVAGFVEYMNRNKTVLHPKTFYGLGEKDG---MTVEVAMQWN 230

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISA 366
           +     +  + N I   +GG H + LR  +TR + ++ E ++   K  +    DD+    
Sbjct: 231 DSYQENVQCFTNNIPQRDGGAHMTALRQVMTRTLNQFIEESEAAKKAKVDTTGDDMREGL 290

Query: 367 VGILSVFIREPEF 379
             +LSV + +P+F
Sbjct: 291 TCVLSVKLPDPKF 303


>gi|21730596|pdb|1KZN|A Chain A, Crystal Structure Of E. Coli 24kda Domain In Complex With
           Clorobiocin
          Length = 205

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 84/207 (40%), Positives = 125/207 (60%), Gaps = 3/207 (1%)

Query: 54  GLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDN 112
           GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V++  +  ++V D+
Sbjct: 1   GLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDD 60

Query: 113 GRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVT 172
           GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + 
Sbjct: 61  GRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELV 119

Query: 173 VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQ 232
           + R+  I  Q +  G+P +PL    +     GT + F P  + F +   F+   L K  +
Sbjct: 120 IQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNVTEFEYEILAKRLR 178

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPE 259
             ++L+  V       ++  E +   E
Sbjct: 179 ELSFLNSGVSIRLRDKRDGKEDHFHYE 205


>gi|148616460|gb|ABQ96973.1| GyrB [Nocardiopsis listeri]
          Length = 424

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 152/430 (35%), Positives = 233/430 (54%), Gaps = 10/430 (2%)

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
           +E+I+T LHAGGKFD  +Y +SGGLHGVG SVVNALS  L V +     ++ Q +    P
Sbjct: 1   IEVIMTVLHAGGKFDGKSYAVSGGLHGVGASVVNALSTALDVEIRTDGHVWRQHYEMTAP 60

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
              + K  +V  + GT++TF  D  IF     +    L +  Q  A+L+  +      ++
Sbjct: 61  TGDIVK-GEVTEETGTQLTFWADDSIFETTV-YSFETLSRRLQEMAFLNKGLAITLRDER 118

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
                   P  + +++  GL  ++      +    + I + + +  G    +VE A+ W 
Sbjct: 119 -PEFTDDGPVVQTYHYEQGLADFVDYINAKKEPAHASIISFEEDGDGI---SVEIAMQWN 174

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISA 366
           +     + ++ NTI T EGGTHE G R ALT  + +YA   +   ++  ++  DD+    
Sbjct: 175 QSYTSSVHTFANTINTTEGGTHEEGFRSALTTLVNRYARDQRLLREKEDNLTGDDIREGL 234

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIER 425
             I+SV + +P+F GQTKTKL + +A+  V+    +    +  +NP EA  ++ +     
Sbjct: 235 TAIISVKLADPQFEGQTKTKLGNTEAKSFVQKVTNEHLRDWFERNPGEAKDIVSKASQAA 294

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
                 R+ +    RKT +    LPGKL+DC        EL+IVEGDSAGGSAK  RN  
Sbjct: 295 RARVAARQARDLTRRKTLLETTSLPGKLSDCQSTKPEECELYIVEGDSAGGSAKGGRNPH 354

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545
           NQA+LP+RGKILNV  +  ++I  NQ++  ++ ALG      + +E LRY K+++MTDAD
Sbjct: 355 NQAILPIRGKILNVEKSRIDRILKNQEVQAIITALGTGIHEDFDQEKLRYHKIVLMTDAD 414

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 415 VDGSHIRTLL 424


>gi|84310478|gb|ABC55387.1| DNA gyrase subunit B [Bacillus licheniformis]
          Length = 409

 Score =  262 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 167/417 (40%), Positives = 236/417 (56%), Gaps = 13/417 (3%)

Query: 137 LHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK 196
           LHAGGKFD S Y++SGGLHGVG SVVNALS EL VTV R   I  Q+F RG+P + L+  
Sbjct: 2   LHAGGKFDGSGYKVSGGLHGVGASVVNALSTELDVTVYRDGKIHYQEFERGVPKADLKVI 61

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
                  GT   F+PDP+IF +   +D   L    +  A+L+  VK      +E  E+  
Sbjct: 62  GDT-EVTGTTTHFKPDPEIFTETTEYDYDTLATRVRELAFLTKGVKITIEDKREGKERKN 120

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
                 + + GG+K+Y++    +R +I  E    +  K G    TVE A+ + +     I
Sbjct: 121 E-----YCYEGGIKSYVEHLNRSREVIHEEPVYIEGSKDGI---TVEVALQYNDSYTSNI 172

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
            S+ N I T EGGTHE+G +  LTR I  YA       +   ++  +D+      I+S+ 
Sbjct: 173 YSFANNIHTYEGGTHEAGFKTGLTRVINDYARRNGVFKESDPNLSGEDVREGLTAIISIK 232

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRR 432
             +P+F GQTKTKL + +A+   +    +  + +L++NP  A K++E  V+        +
Sbjct: 233 HPDPQFEGQTKTKLGNSEARTITDALFSEALEKFLLENPDSAKKIVEKGVMAARARMAAK 292

Query: 433 RKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           + +    RK+A+    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LPL
Sbjct: 293 KARELARRKSALEVSNLPGKLADCSSKDPTISELYIVEGDSAGGSAKQGRDRHFQAILPL 352

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549
           RGKILNV  A  +KI +N ++  ++ ALG      +  E  RY KV+IMTDADVDG+
Sbjct: 353 RGKILNVEKARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVVIMTDADVDGS 409


>gi|257168264|gb|ACV40265.1| DNA gyrase subunit B [Yersinia kristensenii]
          Length = 279

 Score =  262 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 94/288 (32%), Positives = 156/288 (54%), Gaps = 13/288 (4%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
           D   LHH+  EV+DNA+DE +AG+   I V++  +  ++V D+GRGIP   H +    S 
Sbjct: 3   DGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHSDISVSVQDDGRGIPTGMHDE-EGVSA 61

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L + + R+  +  Q +  G+P
Sbjct: 62  AEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVP 121

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            +PL+   +  ++ GT + F P  + F +   F    L K  +  ++L+  V       +
Sbjct: 122 QAPLKVVGET-DQTGTTVRFWPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDKR 180

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
              E       + F++ GG++ +++   +N++ I  ++F   T K       VE A+ W 
Sbjct: 181 NDRE-------DHFHYEGGIRAFVEYLSKNKNPIHPKVFYFSTVKDDI---GVEVALQWN 230

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
           +     I  + N I   +GGTH  G R A+TR +  Y +     +   
Sbjct: 231 DGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAK 278


>gi|47155276|emb|CAG28942.1| gyraseB [Shewanella sp. wp2]
          Length = 419

 Score =  262 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 162/430 (37%), Positives = 250/430 (58%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L +T+ R   ++ Q +S G P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLQLTIRRNGKLYEQFYSMGEPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+++     +  GT + F P  + F D   F    L+K  +  ++L+  V      +++
Sbjct: 61  APIKEIGDSTS-TGTELRFWPSHETFSDTL-FHFDILVKRVRELSFLNSGVGIRLVDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             +       E F + GG+  ++     N++ ++ ++F    E++     TVE A+ W +
Sbjct: 119 NRD-------EFFQYQGGISAFVDYLNVNKTPVNKDVFHFIQERED--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R ALTR +  Y E      K   S   DD      
Sbjct: 170 GFQENIFCFTNNIPQRDGGTHLAGFRGALTRNLNAYMEREGYNKKGKTSATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +    YL+++P EA  ++  +I+   
Sbjct: 230 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGEQLGDYLMEHPNEAKLIVGKIIDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARKAREMTRRKGALDLGGLPGKLADCQEKDPALSEIYIVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  +  RY  ++IMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYDPDKTRYHNIVIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHIRTLL 419


>gi|18916441|dbj|BAB85511.1| DNA gyrase subunit B [Bradyrhizobium japonicum]
 gi|19979601|dbj|BAB88756.1| subunit B protein of DNA gyrase [Bradyrhizobium japonicum]
 gi|19979603|dbj|BAB88757.1| subunit B protein of DNA gyrase [Bradyrhizobium japonicum]
          Length = 302

 Score =  262 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 116/312 (37%), Positives = 172/312 (55%), Gaps = 12/312 (3%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DNA+DE +AG+A  +EV L+ +  +TV D+GRGIPV+ H K   
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHATRVEVILNSDNSVTVRDDGRGIPVDIH-KGEG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALS +L + + R N     +F+ 
Sbjct: 60  ISAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAH 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  ++PL+       +RGT +TF    + F +   +D A L    +  A+L+  V    S
Sbjct: 120 GDAVAPLKVVGDAPGRRGTEVTFLASTETFKN-VEYDFAMLEHRLRELAFLNSGVNIILS 178

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   EK      EE ++ GG++ +++    N+S I       + E  G     VE A+
Sbjct: 179 DMRHAVEKR-----EEMHYSGGVEEFVKYLDRNKSPIVPAPIMVRAEANGI---GVEAAL 230

Query: 307 AWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
            W +   E    + N I   +GGTH +G R ALTR +  YAE    K  I++  DD    
Sbjct: 231 WWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQVNGYAEANAKKEKIALTGDDCREG 290

Query: 366 AVGILSVFIREP 377
              +LSV + +P
Sbjct: 291 LTAVLSVKVPDP 302


>gi|19979597|dbj|BAB88754.1| subunit B protein of DNA gyrase [Bradyrhizobium japonicum]
 gi|19979599|dbj|BAB88755.1| subunit B protein of DNA gyrase [Bradyrhizobium japonicum]
          Length = 302

 Score =  262 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 115/312 (36%), Positives = 172/312 (55%), Gaps = 12/312 (3%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DNA+DE +AG+A  +EV L+ +  +TV D+GRGIPV+ H K   
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHATRVEVILNADNSVTVRDDGRGIPVDIH-KGEG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALS +L + + R N     +F+ 
Sbjct: 60  ISAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAH 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  ++PL+       KRGT +TF    + F +   +D A L    +  A+L+  V    S
Sbjct: 120 GDAVAPLKVVGDAPGKRGTEVTFLASTETFKN-VEYDFATLEHRLRELAFLNSGVNIVLS 178

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   EK      EE ++ GG++ +++    N+  +       ++E  G     VE A+
Sbjct: 179 DMRHAVEKR-----EEMHYSGGVEEFVKYLDRNKKALVPAPIMVRSEANGI---GVEAAL 230

Query: 307 AWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
            W +   E    + N I   +GGTH +G R ALTR +  YAE    K  I++  DD    
Sbjct: 231 WWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQVNGYAEANAKKEKIALTGDDCREG 290

Query: 366 AVGILSVFIREP 377
              +LSV + +P
Sbjct: 291 LTAVLSVKVPDP 302


>gi|222103607|gb|ACM44312.1| GyrB [Shewanella marisflavi]
          Length = 419

 Score =  262 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 165/430 (38%), Positives = 249/430 (57%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L +T+ R+  ++ Q ++ G P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLQLTIRREGKLYEQFYTMGEPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            P+++     N  GT I F P  + F D   F    L K  +  ++L+  V      +++
Sbjct: 61  EPIKEIGDATN-TGTEIRFWPSSQTFSD-VEFHFDILAKRVRELSFLNSGVGIRLVDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             +       E F + GG+  ++     N++ ++ EIF    E++     TVE A+ W +
Sbjct: 119 NKD-------EFFKYEGGISAFVDYLNINKTPVNKEIFHFVQERED--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R ALTR +  Y +      K   S   DD      
Sbjct: 170 GFQENIFCFTNNIPQRDGGTHLAGFRSALTRNLNTYMDREGFNKKGKTSATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP EA  ++  +I+   
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEKLGDYLLENPNEAKLIVGKIIDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARKAREMTRRKGALDLGGLPGKLADCQEKDPALSEIYIVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  +  RY  ++IMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYDPDKTRYHNIVIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHIRTLL 419


>gi|1049326|gb|AAB51450.1| DNA gyrase beta subunit [Caulobacter crescentus CB15]
          Length = 212

 Score =  262 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 88/208 (42%), Positives = 126/208 (60%), Gaps = 12/208 (5%)

Query: 20  SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLF 78
           +E  +       +P    + A+  Y A SI++L+GL+ VR RPGMYIG TD+   LHH+ 
Sbjct: 2   TENTEDQVPDLSTPEMTTEEAAAQYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMV 61

Query: 79  SEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLH 138
            EV+DNA+DE +AG+A  ++V L+ +G +TV D+GRGIPV+ H +    S  E+I+T LH
Sbjct: 62  YEVVDNAIDEALAGHATKVQVILNADGSVTVTDDGRGIPVDMH-EGEGVSAAEVIMTQLH 120

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD ++Y++SGGLHGVG+SVVNALSD L + + R   +   +F RG  ++ L+    
Sbjct: 121 AGGKFDQNSYKVSGGLHGVGVSVVNALSDWLELLIHRNGKVHQMRFERGDAVTSLKVTGD 180

Query: 199 V----------RNKRGTRITFRPDPKIF 216
                          GT +TF P    F
Sbjct: 181 SPVRTEGPKAGETLTGTEVTFFPSKDTF 208


>gi|148470296|gb|ABQ66095.1| gyrase b [uncultured bacterium]
          Length = 431

 Score =  262 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 167/443 (37%), Positives = 243/443 (54%), Gaps = 30/443 (6%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD  +Y++SGGLHGVGISVVNALS  L + + R   ++ Q +S+G+PL
Sbjct: 1   EVIMTVLHAGGKFDKKSYKVSGGLHGVGISVVNALSKRLDMEIYRDGHVYRQSYSKGVPL 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
             LE+ EK    RGT +TF PD +I  D   FD   L    +  A+L+  +      +  
Sbjct: 61  GKLEQCEKTTK-RGTSVTFSPDDEIMED-NSFDFDILSNRLRELAFLNAGIHINIIDE-- 116

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   +  +F + GG+K++++   +N+S+I  E      +K        E ++ + +
Sbjct: 117 -----INNKSHDFKYDGGIKSFVEYINQNKSVIIKEPILISAKKDDVIT---EISLQYND 168

Query: 311 ENPEITS-YCNTILTDEGGTHESGLRVALTRGIKKYAELT---------QNKRAISIISD 360
              EI   Y N I T EGGTH +G + ALTR I  Y             +    I I  D
Sbjct: 169 GYSEILYSYVNNINTKEGGTHLAGFKSALTRVIDNYYTANLANFKDRGGKRNEVIQISGD 228

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D+    + ++S+ +  P+F GQ K KL +   +  VE+ + +    +  +NP  A  ++E
Sbjct: 229 DVREGLIAVISIKMPNPQFEGQIKAKLGNSFVKGVVESLVNEKLTEFFDENPPVAKIIVE 288

Query: 421 WVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
             ++ S  R   RK +E+ R+   +    LPGKLADC +      E++IVEGDSAGGSAK
Sbjct: 289 KALDASRAREAARKAKELVRRKGLLDFSSLPGKLADCQEKDPSQCEIYIVEGDSAGGSAK 348

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-------RSQYREED 532
           Q R+R  QA+LPL+GKILNV  A  EK+  +++I  L+  LG           S +  E 
Sbjct: 349 QGRDRKYQAILPLKGKILNVEKARLEKMLGSEEIKILITTLGGGITSGSKKEESFFNLEK 408

Query: 533 LRYEKVIIMTDADVDGAHIASLL 555
           LRY K+IIMTDADVDG+HI +LL
Sbjct: 409 LRYHKIIIMTDADVDGSHIRTLL 431


>gi|148971285|gb|ABR20180.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  262 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 162/430 (37%), Positives = 244/430 (56%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +LH+ + R   +  Q++  G P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSSKLHLIINRAGQVHEQEYHHGDPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            PL    +  +  GT + F P  ++   +  F+   L +  +  ++L+  V+     ++ 
Sbjct: 61  YPLRVIGET-DSSGTTVRFWPS-ELTFSQTIFNVEILARRLRELSFLNAGVRIVLRDERI 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E         + + GGL  +++   E ++ ++         + G     VE A+ W E
Sbjct: 119 NLE-------HVYDYEGGLSEFVKYINEGKTHLNEIFHFTADTENGI---GVEVALQWNE 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                +    N I   +GGTH +G R ALTRG+ +Y E      K  +++  DD      
Sbjct: 169 SYQENVRCLTNNIPQKDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERS 426
            I+SV + +P+F+ QTK KLVS + +  VE A+   F  YL++NP  A  +   +I    
Sbjct: 229 AIISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAAR 288

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK+A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  
Sbjct: 289 ARDAARKAREMTRRKSALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKM 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY K+IIMTDAD
Sbjct: 349 QAILPLKGKILNVERARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|62633148|gb|AAX89532.1| DNA gyrase subunit B [Halomonas sp. P9]
          Length = 418

 Score =  262 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 165/430 (38%), Positives = 244/430 (56%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+EL +T+     +F Q +  G+  
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELKLTIWXAGQVFEQLYHHGVAD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    K   + GTR+ FRP  + F +   F    L K  +  ++L+  V      ++ 
Sbjct: 61  APLAVVGKT-EQSGTRVHFRPSAETFHN-IEFHYDILAKRLRELSFLNSGVAIRLIDERS 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       E F++ GGLK ++     N+++++         + G     VE A+ W +
Sbjct: 119 GKE-------ELFHYEGGLKAFVNHLNTNKTVLNPVFHFNAEREDGV---GVEVAMQWND 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                I  Y N I   +GGTH +G R ALTR +  Y E      K  ++   DD      
Sbjct: 169 TFSENIFCYTNNIPQRDGGTHLAGFRAALTRSLNHYIEAEGLLKKAKVNTSGDDAREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            I+SV + +P+F+ QTK KLVS + +  VE  +   F  YL++ P EA  ++  +++   
Sbjct: 229 AIISVKVPDPKFSAQTKDKLVSSEVKTAVEQEMGRLFSDYLIEKPNEAKAIVNKMLDAAR 288

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +ELF+VEGDSAGGSAKQ R+R  
Sbjct: 289 AREAARKARDMTRRKGALDIAGLPGKLADCQEKDPSLSELFLVEGDSAGGSAKQGRDRRT 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++ ++  L+ ALGC   R ++  + LRY  +IIMTDAD
Sbjct: 349 QAILPLKGKILNVEKARFDKMLSSAEVGTLITALGCGIGREEFNPDKLRYHSIIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|215254254|gb|ACJ64126.1| DNA gyrase subunit B [Vibrio sp. cn83]
          Length = 419

 Score =  262 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 166/429 (38%), Positives = 243/429 (56%), Gaps = 15/429 (3%)

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           +I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS ++ +T+ R   + +Q +  G P +
Sbjct: 1   VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGQVHTQTYHHGEPEA 60

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
           PL       +K GT I F P    F +   F    L K  +  ++L+  V       +E 
Sbjct: 61  PLTVIGDT-DKTGTEIRFWPSEDTFSN-VEFHYDILAKRLRELSFLNSGVSIKLIDKRE- 117

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
                  + + F F GG++ +++    N++ I  +IF    E+      TVE A+ W + 
Sbjct: 118 -----EDKMDHFMFEGGIQAFVEHLNTNKTPIIQKIFHFDNERDD--GITVEVAMQWNDG 170

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVG 368
               I  + N I   +GGTH +G R ALTR +  + +      K   +   DD       
Sbjct: 171 YQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTA 230

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSE 427
           I+ V + +P+F+ QTK KLVS + +  VE+A+ +    +LV+NP EA  +   +I     
Sbjct: 231 IVPVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLVENPGEAKIVCTKIIDAARA 290

Query: 428 ERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
               R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQ
Sbjct: 291 RDAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQ 350

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADV 546
           A+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADV
Sbjct: 351 AILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADV 410

Query: 547 DGAHIASLL 555
           DG+HI +LL
Sbjct: 411 DGSHIRTLL 419


>gi|148470252|gb|ABQ66073.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  262 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 161/430 (37%), Positives = 251/430 (58%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD++ Y++SGGLHGVG+SVVNALS+ L + + R   +++Q++  G P 
Sbjct: 1   EVIMTVLHAGGKFDDNAYKVSGGLHGVGVSVVNALSETLQLRIFRDGYVWTQEYHDGEPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+ +  +   K G+ I F+P P++F D   F    + K  +  A+L+  V      ++ 
Sbjct: 61  APVAR-GEASRKHGSTIRFKPSPQVFADTH-FHFEIIAKRLRELAFLNSGVHITLLDERG 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       E F++ GG++ +++    +++ I   + T   E+ G     VE A+ W E
Sbjct: 119 GRE-------EVFHYEGGIRAFVEHLNRSKTAIHPTVITLSGERDGI---VVEAALQWNE 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR + +Y E      K  + +  +D      
Sbjct: 169 GYSEAVLCFTNNIPQTDGGTHLAGFRGALTRTLNQYMEREGIIAKAKVVVSGEDTREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE+++ +    +L ++P EA  +   ++E + 
Sbjct: 229 AVLSVKVPDPKFSSQTKEKLVSSEVKPIVESSMSEALTIFLDEHPKEAQAIAAKIVEAAR 288

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   R+ RE   RK A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R +
Sbjct: 289 AREAARRARELTRRKGALDIANLPGKLADCQEKDPAKCEIYLVEGDSAGGSAKQGRDRRH 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++ +I  L+ ALG    +   +   LRY +VIIMTDAD
Sbjct: 349 QAILPLKGKILNVERARFDKMLSSDEIGTLITALGTGIGAGDFDVAKLRYHRVIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|119369888|gb|ABL67958.1| DNA gyrase subunit B [Acidithiobacillus ferrooxidans]
 gi|119369892|gb|ABL67960.1| DNA gyrase subunit B [Acidithiobacillus ferrooxidans]
          Length = 418

 Score =  262 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 161/430 (37%), Positives = 251/430 (58%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD++ Y++SGGLHGVG+SVVNALS+ L + + R   +++Q++  G P 
Sbjct: 1   EVIMTVLHAGGKFDDNAYKVSGGLHGVGVSVVNALSETLQLRIFRDGYVWTQEYHDGEPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+ +  +   K G+ I F+P P++F D   F    + K  +  A+L+  V      ++ 
Sbjct: 61  APVAR-GEASRKHGSTIRFKPSPQVFADTH-FHFEIIAKRLRELAFLNSGVHITLLDERG 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       E F++ GG++ +++    +++ I   + T   E+ G     VE A+ W E
Sbjct: 119 GRE-------EVFHYEGGIRAFVEHLNRSKTAIHPTVITLSGERDGI---VVEAALQWNE 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR + +Y E      K  + +  +D      
Sbjct: 169 GYSEAVLCFTNNIPQTDGGTHLAGFRGALTRTLNQYMEREGIITKAKVVVSGEDTREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE+++ +    +L ++P EA  +   ++E + 
Sbjct: 229 AVLSVKVPDPKFSSQTKEKLVSSEVKPIVESSMSEALTIFLDEHPKEAQAIAAKIVEAAR 288

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   R+ RE   RK A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R +
Sbjct: 289 AREAARRARELTRRKGALDIANLPGKLADCQEKDPAKCEIYLVEGDSAGGSAKQGRDRRH 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++ +I  L+ ALG    +   +   LRY +VIIMTDAD
Sbjct: 349 QAILPLKGKILNVERARFDKMLSSDEIGTLITALGTGIGAGDFDVAKLRYHRVIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|148470304|gb|ABQ66099.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 161/430 (37%), Positives = 251/430 (58%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD++ Y++SGGLHGVG+SVVNALS+ L + + R   +++Q++  G P 
Sbjct: 1   EVIMTVLHAGGKFDDNAYKVSGGLHGVGVSVVNALSEMLQLRIFRDGYVWTQEYHDGEPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+ +  +   K G+ I F+P P++F D   F    + K  +  A+L+  V      ++ 
Sbjct: 61  APVAR-GEASRKHGSTIRFKPSPQVFADTH-FHFEIIAKRLRELAFLNSGVHITLLDERG 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       E F++ GG++ +++    +++ I   + T   E+ G     VE A+ W E
Sbjct: 119 GRE-------EVFHYEGGIRAFVEHLNRSKTAIHPTVITLNGERDGI---VVEAALQWNE 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR + +Y E      K  + +  +D      
Sbjct: 169 GYSEAVLCFTNNIPQTDGGTHLAGFRGALTRTLNQYMEREGIIAKAKVVVSGEDTREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE+++ +    +L ++P EA  +   ++E + 
Sbjct: 229 AVLSVKVPDPKFSSQTKEKLVSSEVKPIVESSMSEALTIFLDEHPKEAQAIAAKIVEAAR 288

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   R+ RE   RK A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R +
Sbjct: 289 AREAARRARELTRRKGALDIANLPGKLADCQEKDPAKCEIYLVEGDSAGGSAKQGRDRRH 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++ +I  L+ ALG    +   +   LRY +VIIMTDAD
Sbjct: 349 QAILPLKGKILNVERARFDKMLSSDEIGTLITALGTGIGAGDFDVAKLRYHRVIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|148971353|gb|ABR20214.1| DNA gyrase subunit B [uncultured bacterium]
 gi|148971373|gb|ABR20224.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 166/430 (38%), Positives = 247/430 (57%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y+ISGGLHGVG+SVVNALS  L +T+ R       +F  G P+
Sbjct: 1   EVIMTVLHAGGKFDSNSYKISGGLHGVGVSVVNALSTWLKMTIYRDGKRHFMEFREGDPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL      +   GT I F P P+ FG    F    L +  +  ++L+  V       + 
Sbjct: 61  APLAVVGDSQK-NGTEIHFLPSPETFGV-IEFHYDILARRLRELSFLNNGVSILLKDLRH 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       E F F GG++ +++     R+++   +F    EK+G     VE A+ W E
Sbjct: 119 GHE-------ENFSFSGGVRGFVEYLNRTRTVLHPTVFHSVGEKEGI---AVEVAMQWNE 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH + LR A+TR + ++ E  +   K  +    DD+     
Sbjct: 169 SYQENVLCFTNNIPQRDGGTHLTALRAAMTRTLNQFIEENELARKAKVETTGDDMREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE  + +   ++L++ P+EA  ++  +I+ + 
Sbjct: 229 CVLSVKVPDPKFSSQTKEKLVSSEVRPAVEEVVSEQMRNFLLEKPVEARIIVGKIIDAAR 288

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK RE   RK A+  L LPGKLADC +      E+++VEGDSAGGSAKQ R+R  
Sbjct: 289 AREAARKARELTRRKGALDGLGLPGKLADCQEKDPAQCEIYLVEGDSAGGSAKQGRDRRF 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q+I+ L+ ALG          E +RY ++IIMTDAD
Sbjct: 349 QAILPLKGKILNVERARFDKLVSSQEIVTLITALGTGIGKDEYSPEKVRYHRIIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|121892|sp|P22840|GYRB_PROMI RecName: Full=DNA gyrase subunit B
 gi|150881|gb|AAA83961.1| DNA gyrase beta-subunit [Proteus mirabilis]
          Length = 182

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 86/183 (46%), Positives = 124/183 (67%), Gaps = 3/183 (1%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+ YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY + I V
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCDEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHSDNSVSVRDDGRGIPTGIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L +T+ R   I  Q +  G+P   L+   +  +K GT + F P    F  +
Sbjct: 121 SVVNALSEKLELTIHRDGKIHQQIYRSGVPDDRLKVIGET-DKSGTFVRFWPSLDTFKGE 179

Query: 220 AGF 222
             F
Sbjct: 180 TEF 182


>gi|148470282|gb|ABQ66088.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 170/430 (39%), Positives = 244/430 (56%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD ++Y+ISGGLHGVG+SVVNALS  L +T+ R    +  +F  G P 
Sbjct: 1   EVIMTVLHAGGKFDGNSYKISGGLHGVGVSVVNALSSWLKLTIHRGGKRYFMEFRHGDPT 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL        +RGT + F    + F     F    L K  +  ++L+  V       + 
Sbjct: 61  APLAMVGN-SERRGTEVHFLASAETFDT-VEFHYDILAKRLRELSFLNHGVSIFLKDMR- 117

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   ++E F F GG++ +++     RS+I   IF    E+ G    TVE AI W E
Sbjct: 118 ------TDQQETFSFSGGVRGFVEYLNRTRSVIHPSIFHASGERDG---MTVEVAIQWNE 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                +  + N I   +GGTH + LR ALTR + ++    +   K  I    DD+     
Sbjct: 169 SYQENVLCFTNNIPQRDGGTHLTALRAALTRTMNQFMVDNEIAKKSKIETSGDDMREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE+ + D    +L++NP E   ++  +IE + 
Sbjct: 229 SVLSVKVPDPKFSSQTKEKLVSSEVRPVVEDVVSDRLKDFLLENPQETKVIIGKIIEAAR 288

Query: 428 ERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK RE+ R+      L LPGKLADC +      EL++VEGDSAGGSAKQ R+R  
Sbjct: 289 AREAARKAREMTRRKGVFDGLGLPGKLADCQEKDPALCELYLVEGDSAGGSAKQGRDRKF 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q+I+ L+ ALG      +Y  E +RY ++IIMTDAD
Sbjct: 349 QAILPLKGKILNVERARFDKLLSSQEIVTLITALGTGIGAEEYMPEKVRYHRIIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|294622314|ref|ZP_06701357.1| DNA topoisomerase 4 subunit B [Enterococcus faecium U0317]
 gi|291598206|gb|EFF29304.1| DNA topoisomerase 4 subunit B [Enterococcus faecium U0317]
          Length = 200

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 85/191 (44%), Positives = 117/191 (61%), Gaps = 4/191 (2%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
            +  ++ Y+ SSI++LEGLE VR RPGMYIG TD + LHHL  E++DNA+DE ++GY + 
Sbjct: 13  AKKVNNEYNDSSIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGSE 72

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I+V++  +  +TV D+GRG+PV  H       T+E+I T LHAGGKF    Y+ SGGLHG
Sbjct: 73  IDVTIHEDNSITVADSGRGMPVGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHG 130

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           VG SVVNALS  L VT+ R    + QKF   G P   L+K  K + + G R++       
Sbjct: 131 VGASVVNALSKWLIVTIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKQTG-RLSIFYQMIQ 189

Query: 216 FGDKAGFDAAR 226
           +  +  F    
Sbjct: 190 YSVQRNFHMKF 200


>gi|148470260|gb|ABQ66077.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 161/430 (37%), Positives = 251/430 (58%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD++ Y++SGGLHGVG+SVVNALS+ L + + R   +++Q++  G P 
Sbjct: 1   EVIMTVLHAGGKFDDNAYKVSGGLHGVGVSVVNALSEMLQLRIFRDGYVWTQEYHDGEPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+ +  +   K G+ I F+P P++F D   F    + K  +  A+L+  V      ++ 
Sbjct: 61  APVAR-GEASRKHGSIIRFKPSPQVFADTH-FHFEIIAKRLRELAFLNSGVHITLLDERG 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       E F++ GG++ +++    +++ I   + T   E+ G     VE A+ W E
Sbjct: 119 GRE-------EVFHYEGGIRAFVEHLNRSKTAIHPTVITLSGERDGI---VVEAALQWNE 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR + +Y E      K  + +  +D      
Sbjct: 169 GYSEAVLCFTNNIPQTDGGTHLAGFRGALTRTLNQYMEREGIIAKAKVVVSGEDTREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE+++ +    +L ++P EA  +   ++E + 
Sbjct: 229 AVLSVKVPDPKFSSQTKEKLVSSEVKPIVESSMSEALTIFLDEHPKEAQAIAAKIVEAAR 288

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   R+ RE   RK A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R +
Sbjct: 289 AREAARRARELTRRKGALDIANLPGKLADCQEKDPAKCEIYLVEGDSAGGSAKQGRDRRH 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++ +I  L+ ALG    +   +   LRY +VIIMTDAD
Sbjct: 349 QAILPLKGKILNVERARFDKMLSSDEIGTLITALGTGIGAGDFDVAKLRYHRVIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|148616468|gb|ABQ96977.1| GyrB [Nocardiopsis rhodophaea]
          Length = 424

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 152/430 (35%), Positives = 239/430 (55%), Gaps = 10/430 (2%)

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
           +E+I+T LHAGGKFD+  Y +SGGLHGVG+SVVNALS  L V +     ++ Q++    P
Sbjct: 1   IEVIMTVLHAGGKFDDKAYAVSGGLHGVGVSVVNALSSRLEVEIRCDGHVWRQRYELTRP 60

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            + L K E      GT+ITF  D  IF     ++   L +  Q  A+L+  +      ++
Sbjct: 61  TADLSKDEATEE-TGTQITFWADDSIFETTT-YNFETLARRMQETAFLNKGLSITLRDER 118

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
                   P    +++  GL  +++     +    + I + + E +G    +VE A+ W 
Sbjct: 119 -PEFTGDAPVVHTYHYEDGLADFVRHINAAKDPAHASIISFEEEGEGI---SVEIAMQWN 174

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISA 366
           +     + ++ NTI T EGGTHE G R ALT  + +YA   +   ++  ++  DD+    
Sbjct: 175 QSYTSSVHTFANTINTAEGGTHEEGFRAALTSIVNRYARDQRLLREKEDNLTGDDIREGL 234

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             ++SV + +P+F GQTKTKL + +A+  V+    +    +  +NP EA  ++    + +
Sbjct: 235 TAVISVKLADPQFEGQTKTKLGNTEAKSFVQRVTNEHLRDWFERNPGEAKDIVTKTNQAA 294

Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
             R+  R+ R+   RKT +    LPGKL+DC       +E++IVEGDSAGGSAK  R+  
Sbjct: 295 RARVAARQARDLTRRKTLLESTSLPGKLSDCQSTEPEKSEVYIVEGDSAGGSAKGGRDPH 354

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545
            QA+LP+RGKILNV  +  ++I  N ++  ++ A+G     ++  E LRY K+I+MTDAD
Sbjct: 355 YQAILPIRGKILNVEKSRIDRILKNNEVQAIITAMGTGIHDEFDIEKLRYHKIILMTDAD 414

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 415 VDGSHIRTLL 424


>gi|326775215|ref|ZP_08234480.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Streptomyces cf. griseus XylebKG-1]
 gi|326655548|gb|EGE40394.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Streptomyces cf. griseus XylebKG-1]
          Length = 643

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 129/396 (32%), Positives = 192/396 (48%), Gaps = 18/396 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +YDA +I +  GLE VR  P MY+G T     HHL  E++DNA+DE  AG+   I V 
Sbjct: 2   TTDYDAEAITLYSGLEAVRRNPSMYVGSTGADGAHHLVLELVDNAVDEAAAGHCGTISVE 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L G+G  +V D+GRGIP + HP+       E++LTTLH+GGKFD S+Y  S GLHGVG++
Sbjct: 62  LHGDGSCSVTDDGRGIPTDQHPEA-GVPACELVLTTLHSGGKFDRSSYATSAGLHGVGLA 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
            VNALS  L + V R     S+ F+RG   +PL++       RGTR+ FRPDP+IF    
Sbjct: 121 CVNALSKWLRLDVWRDGAHHSESFARGSVETPLKRVGDSAR-RGTRVWFRPDPEIFSSCV 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
                 L       AYL   ++      +           E      G++  L  +  + 
Sbjct: 180 LDA-ELLYARLLDIAYLHPGLRVDLVDHR-------TGRNESLCERSGVRGLLAHRARDA 231

Query: 281 SLISSEIFTGKTEKKG-THRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
             + +E  T      G      V+W   + E   ++ +Y NTI TD GG+H   LR AL 
Sbjct: 232 EKVHAEPVTFAWAGDGCVIDAAVQWTEGYAE---QVFAYVNTIRTDLGGSHVDALRGALA 288

Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
             +  +        A  +   D++     ++++ I +  F GQTK  L + +A   V + 
Sbjct: 289 GVVADHLG----PAADRMTVVDILEGLTAVIAIRIPDARFDGQTKRTLRNDEAGARVFDV 344

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           + +     L  +P  A ++ E  ++ S  RL  R  
Sbjct: 345 VTEQARRALAADPELARRIAERAVDASRARLAARLA 380


>gi|182434701|ref|YP_001822420.1| putative DNA gyrase B subunit [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178463217|dbj|BAG17737.1| putative DNA gyrase B subunit [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 643

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 129/396 (32%), Positives = 192/396 (48%), Gaps = 18/396 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +YDA +I +  GLE VR  P MY+G T     HHL  E++DNA+DE  AG+   I V 
Sbjct: 2   TTDYDAEAITLYSGLEAVRRNPSMYVGSTGADGAHHLVLELVDNAVDEAAAGHCGTISVE 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L G+G  +V D+GRGIP + HP+       E++LTTLH+GGKFD S+Y  S GLHGVG++
Sbjct: 62  LHGDGSCSVTDDGRGIPTDQHPEA-GVPACELVLTTLHSGGKFDRSSYATSAGLHGVGLA 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
            VNALS  L + V R     S+ F+RG   +PL++       RGTR+ FRPDP+IF    
Sbjct: 121 CVNALSKWLRLDVWRDGAHHSESFARGSVETPLKRVGDSAR-RGTRVWFRPDPEIFSSCV 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
                 L       AYL   ++      +           E      G++  L  +  + 
Sbjct: 180 LDA-ELLYARLLDIAYLHPGLRVDLVDHR-------TGRNESLCERSGVRGLLAHRARDA 231

Query: 281 SLISSEIFTGKTEKKG-THRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
             + +E  T      G      V+W   + E   ++ +Y NTI TD GG+H   LR AL 
Sbjct: 232 EKVHAEPVTFAWAGDGCVIDAAVQWTEGYAE---QVFAYVNTIRTDLGGSHVDALRGALA 288

Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
             +  +        A  +   D++     ++++ I +  F GQTK  L + +A   V + 
Sbjct: 289 GVVADHLG----PAADRMTVVDILEGLTAVIAIRIPDARFDGQTKRTLRNDEAGARVFDV 344

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           + +     L  +P  A ++ E  ++ S  RL  R  
Sbjct: 345 VTEQARRALAADPELARRIAERAVDASRARLAARLA 380


>gi|119369936|gb|ABL67982.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 161/430 (37%), Positives = 251/430 (58%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD++ Y++SGGLHGVG+SVVNALS+ L + + R   +++Q++  G P 
Sbjct: 1   EVIMTVLHAGGKFDDNAYKVSGGLHGVGVSVVNALSETLQLRIFRDGYVWTQEYHDGEPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+ +  +   K G+ I F+P P++F D   F    + K  +  A+L+  V      ++ 
Sbjct: 61  APVAR-GEASRKHGSTIRFKPSPQVFADTH-FHFEIIAKRLRELAFLNSGVHITLLDERG 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       E F++ GG++ +++    +++ I   + T   E+ G     VE A+ W E
Sbjct: 119 GRE-------EVFHYEGGIRAFVEHLNRSKTAIHPTVITLNGERDGI---VVEAALQWNE 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR + +Y E      K  + +  +D      
Sbjct: 169 GYSEAVLCFANNIPQTDGGTHLAGFRGALTRTLNQYMEREGIIAKAKVVVSGEDTREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE+++ +    +L ++P EA  +   ++E + 
Sbjct: 229 AVLSVKVPDPKFSSQTKEKLVSSEVKPIVESSMSEALTIFLDEHPKEAQAIAAKIVEAAR 288

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   R+ RE   RK A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R +
Sbjct: 289 AREAARRARELTRRKGALDIANLPGKLADCQEKDPAKCEIYLVEGDSAGGSAKQGRDRRH 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++ +I  L+ ALG    +   +   LRY +VIIMTDAD
Sbjct: 349 QAILPLKGKILNVERARFDKMLSSDEIGTLITALGTGIGAGDFDVAKLRYHRVIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|84310482|gb|ABC55389.1| DNA gyrase subunit B [Bacillus mojavensis]
          Length = 409

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 166/418 (39%), Positives = 238/418 (56%), Gaps = 13/418 (3%)

Query: 136 TLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK 195
            LHAGGKFD S Y++SGGLHGVG SVVNALS EL VTV R   I  Q ++RGIP+S LE 
Sbjct: 1   VLHAGGKFDGSGYKVSGGLHGVGASVVNALSTELDVTVHRDGKIHRQVYNRGIPVSDLEV 60

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
             +  +  GT   F PDP+IF +   ++   L    +  A+L+  V       +E  E+ 
Sbjct: 61  IGET-DHTGTTTHFVPDPEIFTETTEYEYDPLANRVRELAFLTKGVNITIEDKREGQERK 119

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PE 314
                  +++ GG+K+Y++    ++ ++  E    + EK G    TVE A+ + +     
Sbjct: 120 NE-----YHYEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGI---TVEVALQYNDGYTSN 171

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSV 372
           I S+ N I T EGGTHE+G +  LTR I  YA      +    ++  DD+      I+S+
Sbjct: 172 IYSFTNNINTYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISI 231

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
              +P+F GQTKTKL + +A+   +       + ++++NP  A K+++  +  +  R+  
Sbjct: 232 KHPDPQFEGQTKTKLGNSEARTITDTLFSAALETFMLENPDAARKIVDKGLMAARARMAA 291

Query: 433 RKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           +K      RK+A+    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP
Sbjct: 292 KKARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILP 351

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549
           LRGKILNV  A  +KI  N ++  ++ ALG      +  E  RY KV+IMTDADVDG+
Sbjct: 352 LRGKILNVEKARLDKILPNNEVRSMITALGTGIGEDFNLEKARYHKVVIMTDADVDGS 409


>gi|119370002|gb|ABL68015.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 161/430 (37%), Positives = 251/430 (58%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD++ Y++SGGLHGVG+SVVNALS+ L + + R   +++Q++  G P 
Sbjct: 1   EVIMTVLHAGGKFDDNAYKVSGGLHGVGVSVVNALSETLQLRIFRDGYVWTQEYHDGEPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+ +  +   K G+ I F+P P++F D   F    + K  +  A+L+  V      ++ 
Sbjct: 61  APVAR-GEASRKHGSTIRFKPSPQVFADTH-FHFEIIAKRLRELAFLNSGVHITLLDERG 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       E F++ GG++ +++    +++ I   + T   E+ G     VE A+ W E
Sbjct: 119 GRE-------EVFHYEGGIRAFVEHLNRSKTAIHPTVITLNGERDGI---VVEAALQWNE 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR + +Y E      K  + +  +D      
Sbjct: 169 GYSEAVLCFTNNIPQTDGGTHLAGFRGALTRTLNQYMEREGIIAKAKVVVSGEDTREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE+++ +    +L ++P EA  +   ++E + 
Sbjct: 229 AVLSVKVPDPKFSSQTKEKLVSSEVKPVVESSMSEALTIFLDEHPKEAQAIAAKIVEAAR 288

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   R+ RE   RK A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R +
Sbjct: 289 AREAARRARELTRRKGALDIANLPGKLADCQEKDPAKCEIYLVEGDSAGGSAKQGRDRRH 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++ +I  L+ ALG    +   +   LRY +VIIMTDAD
Sbjct: 349 QAILPLKGKILNVERARFDKMLSSDEIGTLITALGTGIGAGDFDVAKLRYHRVIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|222103605|gb|ACM44311.1| GyrB [Shewanella profunda]
          Length = 419

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 162/430 (37%), Positives = 247/430 (57%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L +T+ R   ++ Q ++ G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLQMTIRRAGKVYEQFYTHGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+++        GT I F P    F D   F    L K  +  ++L+  V      +++
Sbjct: 61  APIKEIGDATK-TGTEIRFWPSEDTFSD-VEFHFEILAKRVRELSFLNSGVGIRLIDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + E F + GG+  ++     N++ ++ ++F    E++     TVE A+ W +
Sbjct: 119 N-------KNEFFKYEGGISAFVDYLNRNKTPVNKDVFHFMQERED--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                I  + N I   +GGTH  G R ALTR +  Y E      K   S   DD      
Sbjct: 170 GYQENIFCFTNNIPQRDGGTHLVGFRSALTRNLNSYMENEGYNKKGKTSATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +  + YL++NP +A  ++  +++   
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEKLNDYLLENPADAKLIVGKIVDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  +  RY  +IIMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKTRYHNIIIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHIRTLL 419


>gi|2353024|gb|AAB69350.1| gyrase beta subunit [Shewanella benthica]
          Length = 420

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 159/430 (36%), Positives = 249/430 (57%), Gaps = 15/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SG LHGVG+SVVNALS +L +T+ R   ++ Q ++ G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGCLHGVGVSVVNALSQKLQLTIRRNGKLYEQFYTMGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+++     +  GT + F P  + F +   F    L+K  +  ++L+  V      +++
Sbjct: 61  APIKEIGDATS-TGTELRFWPSHETFTNNIEFHFDILVKRVRELSFLNSGVGIRLIDERD 119

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             +       E F + GG+  ++     N++ ++ + F    E+      TVE A+ W +
Sbjct: 120 NRD-------EFFQYQGGISAFVDYLNVNKTPVNKDAFHFIQERDD--GITVEVAMQWND 170

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R ALTR +  Y E      K   S   DD      
Sbjct: 171 GFQENIFCFTNNIPQRDGGTHLAGFRGALTRNLNAYMEREGYNKKGKTSATGDDAREGLT 230

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +    YL+++P EA  ++  +I+   
Sbjct: 231 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGEKLGDYLMEHPNEARLIVGKIIDAAR 290

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR N
Sbjct: 291 AREAARKAREMTRRKGALDLGGLPGKLADCQEKDPALSEIYIVEGDSAGGSAKQGRNRKN 350

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q+++DL+ ALGC   R +Y  +  RY  ++I+TDAD
Sbjct: 351 QAILPLKGKILNVEKARFDKMLSSQEVVDLITALGCGIGRDEYHPDKTRYHNIVIITDAD 410

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 411 VDGSHIRTLL 420


>gi|148470264|gb|ABQ66079.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 161/430 (37%), Positives = 251/430 (58%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD++ Y++SGGLHGVG+SVVNALS+ L + + R   +++Q++  G P 
Sbjct: 1   EVIMTVLHAGGKFDDNAYKVSGGLHGVGVSVVNALSETLQLRIFRDGYVWTQEYHDGEPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+ +  +   K G+ I F+P P++F D   F    + K  +  A+L+  V      ++ 
Sbjct: 61  APVAR-GEASRKHGSTIRFKPSPQVFADTH-FHFEIIAKRLRELAFLNSGVHITLLDERG 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       E F++ GG++ +++    +++ I   + T   E+ G     VE A+ W E
Sbjct: 119 GRE-------EVFHYEGGIRAFVEHLNRSKTAIHPTVITLSGERDGI---VVEAALQWNE 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR + +Y E      K  + +  +D      
Sbjct: 169 GYSEAVLCFTNNIPQTDGGTHLAGFRGALTRTLNQYMEREGIIAKAKVVVSGEDTREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE+++ +    +L ++P EA  +   ++E + 
Sbjct: 229 AVLSVKVPDPKFSSQTKEKLVSSEVKPIVESSMSEALTVFLDEHPKEAQAIAAKIVEAAR 288

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   R+ RE   RK A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R +
Sbjct: 289 AREAARRARELTRRKGALDIANLPGKLADCQEKDPAKCEIYLVEGDSAGGSAKQGRDRRH 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++ +I  L+ ALG    +   +   LRY +VIIMTDAD
Sbjct: 349 QAILPLKGKILNVERARFDKMLSSDEIGTLITALGTGIGAGDFDVAKLRYHRVIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|148616472|gb|ABQ96979.1| GyrB [Nocardiopsis salina]
          Length = 423

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 157/430 (36%), Positives = 233/430 (54%), Gaps = 11/430 (2%)

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
           +E+I+T LHAGGKFD+ +Y +SGGLHGVG+SVVNALS  L V + R   I+ Q +    P
Sbjct: 1   IEVIMTVLHAGGKFDDKSYAVSGGLHGVGVSVVNALSSSLEVEIHRDGYIWRQHYELTRP 60

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
              +  +E  R   GT+ITF PD  IF     F    L +  Q  A+L+  +      ++
Sbjct: 61  GDLVRGEEATR--TGTQITFWPDEGIFETTT-FSYETLSRRMQEMAFLNKGLSISIRDER 117

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
                   P    +++  GL  Y+      +    + I + + E  G    +VE A+ W 
Sbjct: 118 -PEFVDDGPVVNTYHYENGLSDYVDYINSKKEPAHASIISFEEEGDGI---SVEIAMQWN 173

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISA 366
           +     + ++ NTI T EGGTHE G R ALT  I +YA   +   ++  ++  DD+    
Sbjct: 174 QSYTSSVHTFANTINTAEGGTHEEGFRTALTALINRYARDQKLLREKDDNLTGDDIREGL 233

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIER 425
             I+SV + +P+F GQTKTKL + +A+  V+    +    +L +NP EA  ++ +     
Sbjct: 234 TAIISVKLADPQFEGQTKTKLGNTEAKSFVQKVTNEHLRDWLERNPGEAKDIVSKASQAA 293

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
                 R+ +    RKT +    LPGKL+DC        E++IVEGDSAGGSAK  R+  
Sbjct: 294 RARVAARQARDLTRRKTLLETTSLPGKLSDCQSTNPEECEVYIVEGDSAGGSAKGGRDPH 353

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545
           +QA+LP+RGKILNV  +  ++I  N ++  ++ ALG      +    LRY K+I+MTDAD
Sbjct: 354 HQAILPIRGKILNVEKSRIDRILKNNEVQAIITALGTGIHEDFDASKLRYHKIILMTDAD 413

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 414 VDGSHIRTLL 423


>gi|29652992|gb|AAO87465.1| DNA gyrase B [Listeria monocytogenes]
          Length = 216

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 95/215 (44%), Positives = 131/215 (60%), Gaps = 2/215 (0%)

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +R +    + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+L
Sbjct: 3   AKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAIL 62

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           P+RGKILNV  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAH
Sbjct: 63  PIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAH 122

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           I +LLLT FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  
Sbjct: 123 IRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQVEYVYSDGQLEDYLASL--DGDT 180

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645
           K  I R+KGLGEM   QL +T M+   RTLL+V I
Sbjct: 181 KYSIQRYKGLGEMNPEQLWDTTMNPEHRTLLQVNI 215


>gi|119369916|gb|ABL67972.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 421

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 172/430 (40%), Positives = 234/430 (54%), Gaps = 14/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKF+ + Y++SGGLHGVG+SVVNALS+ L + + R       +F  G P 
Sbjct: 1   EVIMTVLHAGGKFEQNAYKVSGGLHGVGVSVVNALSEWLELRIWRSGQEHKMRFHDGEPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL        KRGT +TF P P+ F     FD A L    +  A+L+  V    S  + 
Sbjct: 61  APLALVGPANGKRGTEVTFLPSPRTFTK-TEFDYATLEHRLRELAFLNSGVTIRLSDQRG 119

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
           + +K         ++ GGL+ +++     ++ +         E+ G    TVE A++W +
Sbjct: 120 VEKKESK-----LHYEGGLEAFVRYLDRAKNGLIPAPLLITGERDGI---TVEAALSWND 171

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR + KYAE +    K  + I  DD      
Sbjct: 172 SYHESMLCFTNNIPQRDGGTHLAGFRAALTRVVIKYAEDSGIAKKEKVQISGDDCREGLT 231

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV +  P+F+ QTK KLVS + +  VE+      D        +        + +  
Sbjct: 232 CVLSVKVPGPKFSSQTKDKLVSSEVRPVVESVAATRSDAGSRSIQAKLKPKSARWLRQPP 291

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK RE   RK A     LPGKLADC +      ELFIVEGDSAGGSAKQARNR+N
Sbjct: 292 AREAARKARELTRRKGAFDSASLPGKLADCQERDPAKCELFIVEGDSAGGSAKQARNRNN 351

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QAVLPLRGKILNV  A  +K+ ++  I  L+ ALG      ++  E LRY K+IIMTDAD
Sbjct: 352 QAVLPLRGKILNVERARFDKMLSSDAIATLITALGTSVGPEEFNPEKLRYHKIIIMTDAD 411

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 412 VDGSHIRTLL 421


>gi|148971349|gb|ABR20212.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 421

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 167/433 (38%), Positives = 247/433 (57%), Gaps = 20/433 (4%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD   Y++SGGLHGVG+SVVNALS++L V V R+  I++Q + RG P 
Sbjct: 1   EVIMTVLHAGGKFDKGAYKVSGGLHGVGVSVVNALSEQLKVEVYREGKIWTQSYKRGKPE 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            P+E   K ++  GTR+TF+PD  I   +  F    L    +  A+L+   K     +  
Sbjct: 61  GPVEATGKTQDH-GTRVTFKPDSDI-SSETKFSYDILSNRLREIAFLNAGAKITIIDE-- 116

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   +K  F++ GG+  +++    N+  + SE  +    K+ T    V++AI   E
Sbjct: 117 -----HDDKKHTFHYEGGISQFVRFLNANKKPLHSEPISASKSKEDT---VVDFAIQHNE 168

Query: 311 ENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAV 367
           +  E   S+ N I T EGGTH +G R ALTR I  Y +     +  +     DD+     
Sbjct: 169 DYSENVFSFVNDIKTPEGGTHLAGFRSALTRVINDYIKKYDLLKGKNFTVTGDDVREGLC 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            ++++ I  P+F GQTKTKL + + +  V++ + +    +  +NP  A  + +  I  +E
Sbjct: 229 AVIAIKIPNPQFEGQTKTKLGNQEVEGLVKSIVGESLGIFFEENPATAKAISQKAIAAAE 288

Query: 428 ERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   +K R++ R+   +    LPGKLADC +     +ELFIVEGDSAGGSAKQ R+R  
Sbjct: 289 AREAAKKARDLTRRKGVLDGSSLPGKLADCQERDPERSELFIVEGDSAGGSAKQGRDRVF 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT----RSQYREEDLRYEKVIIMT 542
           QA+LP++GKILNV  A   KI +N+++  L+ A+G          ++ E LRY K+IIMT
Sbjct: 349 QAILPIKGKILNVEKARLVKILSNEEVRTLIAAIGTGIGSEGDEGFKLEKLRYHKLIIMT 408

Query: 543 DADVDGAHIASLL 555
           DADVDG+HI +LL
Sbjct: 409 DADVDGSHIRTLL 421


>gi|148971341|gb|ABR20208.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 163/430 (37%), Positives = 251/430 (58%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+ LH+ + R+  I  Q ++ G PL
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSESLHLVIRREGHIHEQHYAHGEPL 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL+         G++I F+P    F     F    L +  +  A+L+  V      ++ 
Sbjct: 61  APLKITGSST-TTGSQIWFKPSANTF-THIEFSYDILARRLRELAFLNSGVHIHLKDER- 117

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                     + F + GG+K +++    N++++   +F+ + EK       +E ++ W +
Sbjct: 118 ------ADRSDIFCYEGGIKAFVEYLNRNKTVLFPTVFSMQAEKDNV---GIELSMQWND 168

Query: 311 ENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
              E    + N I   +GGTH +G R ALTR +  Y E      K  ++   DD      
Sbjct: 169 TYQENLLCFTNNIPQRDGGTHLAGFRSALTRTLNHYIEQEGFAKKAKVTTTGDDAREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE+AL D F+ +L++NP  A  ++  +I+ + 
Sbjct: 229 AVLSVKVHDPKFSSQTKDKLVSSEVKAAVESALADKFNDFLLENPAVAKVIVGKMIDAAR 288

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   R+ R+   RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ R+R  
Sbjct: 289 AREAARRARDLTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRDRKF 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  +  +K+ ++Q++  L+ ALGC    +  +    RY ++IIMTDAD
Sbjct: 349 QAILPLKGKILNVEKSRFDKMLSSQEVATLITALGCGIGPEEYDPGKTRYHRIIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|253826370|gb|ACT36488.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  260 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 158/415 (38%), Positives = 234/415 (56%), Gaps = 15/415 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKF    Y++SGGLHGVG+SVVNALS +L V V R+  ++ Q++  G P   +++  
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSKKLEVQVKREGKVYQQEYRCGAPQYDIKEIG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +     GTR+TF PD +IF +   +D   L    +  A+L+  ++   + ++        
Sbjct: 61  E-SEMTGTRVTFWPDEEIFTETTEYDFDTLQSRIRELAFLNKGIEIVLTDER-------T 112

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
              + F + GG+ ++++   +NR  +       + EK       VE A+ + +     I 
Sbjct: 113 DISQTFIYEGGIISFVEHLNQNREPVHQPPIYVEGEKDHIQ---VEVALQYNDSYTENIY 169

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
           S+ N I T EGGTHESG + ALTR + +YA       +   ++  DD+      I+SV I
Sbjct: 170 SFANNINTHEGGTHESGFKSALTRILNEYARKYNAIKESDANLSGDDVREGLTAIISVKI 229

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRR 433
            +P+F GQTKTKL + + +  VE+   +  + +L +NP  A K++E  V  +      R+
Sbjct: 230 PDPQFEGQTKTKLGNSEVRGIVESLFAEKLEEFLRENPAIAKKIVEKGVQAQRAREAARK 289

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            +    RK+A+    LPGKLADCS   A  +E++IVEGDSAGGSAKQ R+R  QA+LPLR
Sbjct: 290 ARELTRRKSALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLR 349

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           GKILNV  A  +KI +N +I  ++ ALG      +     RY K+IIMTDADVDG
Sbjct: 350 GKILNVEKARLDKILSNAEIRAIITALGTGIGEDFDISKARYHKIIIMTDADVDG 404


>gi|183987588|gb|ACC65784.1| topoisomerase II [Pleurotus cystidiosus]
          Length = 692

 Score =  260 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 115/546 (21%), Positives = 221/546 (40%), Gaps = 37/546 (6%)

Query: 154 LHGVGISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEK-VRNKRGTRITFR 210
            HG G  + N  S E  +  A       +SQ +++ +      K  K  R +  TR+TF+
Sbjct: 1   RHGFGAKLANIYSLEFMIETADKTSEKKYSQTWTKNMSQVGKAKITKNSRGEEYTRVTFK 60

Query: 211 PDPKIFGDKA--GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           PD   FG +      A+ L K     A     VK   + ++    K    ++    +   
Sbjct: 61  PDLARFGMQYIDADTASLLRKRVYDMAGTVKDVKVYLNDERL---KIKNFKQYVEMYLDA 117

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGG 328
                +      +     +   +           E A A  +  P+  S+ N+I T +GG
Sbjct: 118 AAADAKENSGGAAQAKPTVIYEQIS------PRWEVAFATSDGTPQHVSFANSISTIKGG 171

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           TH + +   + +     A +T+  +  ++    +       ++  I  P F  QTK  L 
Sbjct: 172 THVTYIADQIAK--NLIAAITKKNKGATVKPAQIRNHMWIFVNSLIENPTFDSQTKETLT 229

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKL 447
              ++   + +L + F   + +     + ++E V+  ++ +  ++ ++   +++  +  +
Sbjct: 230 LPASKFGSKPSLSEEFMKKVQK-----SSIIEQVLNWAKFKADQQIKKTDGSKRNRLTGM 284

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGS 504
                  +     A    L + EGDSA   A        R N  V PLRGK LNV  A  
Sbjct: 285 AKLSDANNAGTKHAEKCTLILTEGDSAKSLAVAGLAVVGRDNFGVFPLRGKFLNVREAKH 344

Query: 505 EKIRNNQQIMDLVQALGCRTRSQY-REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           ++I  N++I ++ + +G +   +Y     LRY +++IMTD D DG+HI  LL+ F     
Sbjct: 345 DQIMKNEEIQNIKKIMGLQHNKEYANISSLRYGRLMIMTDQDHDGSHIKGLLINFLDHFY 404

Query: 564 YDLIEQK-HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
             L++    L     P+ R+T+G +          +  LEE       K     +KGLG 
Sbjct: 405 PSLLKVPEFLVEFVTPIVRVTKGNQRKNFFTIPEYETWLEETPDS--KKWTAKYYKGLGT 462

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE--RASF 680
              +  +E      K  +    +  +  +L     + +K    KAD+R +++++    ++
Sbjct: 463 SSDADAREYFSQMGKHMIPFATMEDEERAL--IDLAFSK---KKADDRKEWLRQFKPGTY 517

Query: 681 ID-DVG 685
           +D ++ 
Sbjct: 518 LDHNID 523


>gi|285804186|gb|ADC35601.1| DNA gyrase subunit B [Geobacillus thermoglucosidasius]
          Length = 419

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 167/429 (38%), Positives = 244/429 (56%), Gaps = 14/429 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKF    Y++SGGLHGVG SVVNALS+EL V V R   I  QK+ RG+P 
Sbjct: 1   EVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSEELEVYVHRDGKIHYQKYQRGVPC 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           + L+   +  ++ GT + F+PDP+IF +   FD   L    +  A+L+  +K      + 
Sbjct: 61  TDLQVVGET-DRTGTTVHFKPDPEIFTETTEFDYETLATRLRELAFLNRGLKITLEDKRV 119

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
              K        + + GG++ Y++     R ++  E      E+ G +   VE A  + +
Sbjct: 120 ENRKNE------YCYEGGIQPYVKHLNRTREVLHEEPIYIIGERDGIY---VEIAFQYND 170

Query: 311 ENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAV 367
                  S+ N I T EGGTHESG ++ALTR I  YA   Q  +    ++  +D+     
Sbjct: 171 SYSSNIYSFVNNIHTHEGGTHESGFKMALTRIINDYARKQQIFKDNDPNLTGEDVREGLT 230

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERS 426
            I+S+    P+F GQTKTKL + DA+   +    + F+ +L++NP  A K++E  ++   
Sbjct: 231 AIVSIKHPAPQFEGQTKTKLGNSDARTVTDAVFSEQFETFLLENPTIARKIVEKGMMAAR 290

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                ++ +    RK+A+    LPGKLADCS      +EL++VEGDSAGGSAKQ R+R  
Sbjct: 291 ARLAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYVVEGDSAGGSAKQGRDRHF 350

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADV 546
           QA+LPLRGKI+NV  A  +KI +N ++  ++ ALG      +     RY K+IIMTDADV
Sbjct: 351 QAILPLRGKIINVEKARLDKILSNNEVRAIITALGTGIGEDFDITKARYHKIIIMTDADV 410

Query: 547 DGAHIASLL 555
           DG+HI +LL
Sbjct: 411 DGSHIRTLL 419


>gi|119369954|gb|ABL67991.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 165/430 (38%), Positives = 249/430 (57%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+EL +T+ R   +  Q +  G P 
Sbjct: 1   EVIMTVLHAGGKFDSNSYKVSGGLHGVGVSVVNALSEELSLTIWRDGYVHEQTYHDGEPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL+     + +RGT I F+P    F     F    L K  +  ++L+  VK     ++ 
Sbjct: 61  APLKPTGPTQ-QRGTEIKFKPSANTFTQ-IEFHYEILAKRLRELSFLNSGVKIELIDERS 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + + F + GG++ +++     ++ I   +F    EK       VE AI W +
Sbjct: 119 -------GKSDIFEYQGGIRAFVEHLNRMKNPIHPTVFYFSQEKDHI---NVEVAIRWND 168

Query: 311 ENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
              E    + N I   +GG+H +GLR ALTR + +Y E      K  I    +D+     
Sbjct: 169 SFQETLFCFTNNIPQRDGGSHLAGLRSALTRTLNQYIEAEGLAKKHKIDTNGEDIREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER-S 426
            +LSV +++P+F+ QTK KLVS D +  VE+ + +    YL++NP +A  ++  +I+   
Sbjct: 229 AVLSVKVQDPKFSSQTKDKLVSSDVKPVVESLVNEKLQDYLLENPQQAKAIVMKIIDAGR 288

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK+A+    LPGKLADC +     +ELF+VEGDSAGGSAKQ R+R  
Sbjct: 289 AREAARKAREMNRRKSALDIAGLPGKLADCQEKDPALSELFLVEGDSAGGSAKQGRDRRT 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+  +Q++  L+ ALGC   R +Y  + +RY ++II TDAD
Sbjct: 349 QAILPLKGKILNVEKARFDKMIASQEVGTLITALGCGIGRDEYNPDKIRYHRIIIKTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|19979609|dbj|BAB88760.1| subunit B protein of DNA gyrase [Bradyrhizobium japonicum]
 gi|19979611|dbj|BAB88761.1| subunit B protein of DNA gyrase [Bradyrhizobium japonicum]
          Length = 302

 Score =  260 bits (664), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 116/312 (37%), Positives = 170/312 (54%), Gaps = 12/312 (3%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DNA+DE +AG+A  ++V L+ +  +TV D+GRGIPV+ H K   
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHATRVDVVLNADNSVTVRDDGRGIPVDIH-KGEG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALS +L + + R N     +F+ 
Sbjct: 60  ISAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAH 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  ++PL        KRGT +TF   P  F +   +D A L    +  A+L+  V    S
Sbjct: 120 GDAVAPLVVVGDAPGKRGTEVTFLASPDTFKN-IEYDFATLEHRLRELAFLNSGVNIALS 178

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   EK      EE ++ GG++ +++    N+  I       + E  G     VE A+
Sbjct: 179 DMRHAVEKR-----EEMHYSGGVEEFVKHLDRNKKAIVPAPIMVRAEANGI---GVEAAL 230

Query: 307 AWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
            W +   E    + N I   +GGTH +G R ALTR +  YAE    K  I++  DD    
Sbjct: 231 WWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQVNGYAEANAKKEKIALTGDDCREG 290

Query: 366 AVGILSVFIREP 377
              +LSV + +P
Sbjct: 291 LTAVLSVKVPDP 302


>gi|119369894|gb|ABL67961.1| DNA gyrase subunit B [Acidithiobacillus ferrooxidans]
          Length = 420

 Score =  260 bits (664), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 156/430 (36%), Positives = 242/430 (56%), Gaps = 15/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD ++Y++SGGLHGVGISVVNALS +L +++ R+   + Q+++ G P+
Sbjct: 1   EVIMTVLHAGGKFDENSYKVSGGLHGVGISVVNALSKKLTLSIKREGQRWEQEYATGDPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+      R   GT I F PDP++F     F  +RL    +  A+L+  +K     ++E
Sbjct: 61  APIAPTGNCRG-TGTTIIFWPDPEVFES-TEFSFSRLQNRFKELAFLNDNLKITLKDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             ++        +++ GG+  ++    + R  I   I   + E+ G     V+ AI W +
Sbjct: 119 GRKREAT-----YHYEGGVAAFVADINKGREAIHPTIIRVRGERDGI---VVDAAIQWND 170

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R A+TR +  Y +      K  I+  S D+     
Sbjct: 171 GYAESVYPFTNNIPQADGGTHLTGFRSAMTRAMSAYLDREGIAAKNKITADSSDMREGLA 230

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERS 426
            ILSV + +P+F+ QTK KLVS + +  VE  + +    +L ++P EA  +   ++    
Sbjct: 231 AILSVKVPDPKFSSQTKDKLVSSEVRPVVEGIIAEALTTFLDEHPKEAQAIAAKIVEAAR 290

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK+A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R  
Sbjct: 291 AREAARKARETTRRKSAMDIANLPGKLADCQEKDPSLCEIYLVEGDSAGGSAKQGRDRKF 350

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  ++I  +++I  ++ ALG            LRY ++I+MTDAD
Sbjct: 351 QAILPLKGKILNVERARFDRILESEEIGTMITALGTGIGPDEFNAAKLRYHRIILMTDAD 410

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 411 VDGSHIRTLL 420


>gi|148616450|gb|ABQ96968.1| GyrB [Nocardiopsis exhalans]
          Length = 424

 Score =  260 bits (664), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 158/430 (36%), Positives = 233/430 (54%), Gaps = 10/430 (2%)

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
           +E+I+T LHAGGKFD  +Y +SGGLHGVGISVVNALS  L V + +Q  ++ Q +    P
Sbjct: 1   IEVIMTVLHAGGKFDGKSYAVSGGLHGVGISVVNALSTALDVEIRQQGHVWRQHYEMTAP 60

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
              L K E+  ++ GT+ITF  D  IF     F    L +  Q  A+L+  +      ++
Sbjct: 61  TGELIKGEET-DETGTQITFWADGSIFETTT-FSFETLARRMQEMAFLNKGLSITIRDER 118

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
                   P    F++  GL  Y++     +    + I + + E +G     VE A+ W 
Sbjct: 119 -PDHIDDAPVVNTFHYEEGLSDYVRHINAKKEPAHASIISFEEEGEGI---AVEVAMQWN 174

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISA 366
           +     + ++ NTI T EGGTHE G R ALT  + +YA   +    +  ++  DD+    
Sbjct: 175 QSYTSSVHTFANTINTAEGGTHEEGFRSALTTLVNRYARDQKLLRDKEDNLTGDDIREGL 234

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIER 425
             I+SV + +P+F GQTKTKL + +A+  V+    +    +  +NP E   ++ +     
Sbjct: 235 TAIISVKLADPQFEGQTKTKLGNTEAKSFVQKVTNEHLRDWFERNPGEGKDIVSKASQAA 294

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
                 R+ +    RKT +     PGKL+DC        E++IVEGDSAGGSAK  RN  
Sbjct: 295 RARVAARQARDLTRRKTLLETTSPPGKLSDCQSTNPEECEVYIVEGDSAGGSAKGGRNPH 354

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545
           NQA+LP+RGKILNV  +  ++I  N ++  ++ ALG     ++  E LRY KVI+MTDAD
Sbjct: 355 NQAILPIRGKILNVEKSRIDRILKNNEVQAIITALGTGIHEEFDAEKLRYHKVILMTDAD 414

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 415 VDGSHIRTLL 424


>gi|29652962|gb|AAO87450.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652966|gb|AAO87452.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652988|gb|AAO87463.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652990|gb|AAO87464.1| DNA gyrase B [Listeria monocytogenes]
          Length = 216

 Score =  260 bits (664), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 95/215 (44%), Positives = 131/215 (60%), Gaps = 2/215 (0%)

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +R +    + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+L
Sbjct: 4   AKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAIL 63

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           P+RGKILNV  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAH
Sbjct: 64  PIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAH 123

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           I +LLLT FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  
Sbjct: 124 IRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDT 181

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645
           K  I R+KGLGEM   QL +T M+   RTLL+V I
Sbjct: 182 KYSIQRYKGLGEMNPEQLWDTTMNPEHRTLLQVNI 216


>gi|19979595|dbj|BAB88753.1| subunit B protein of DNA gyrase [Bradyrhizobium japonicum]
          Length = 302

 Score =  260 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 115/312 (36%), Positives = 172/312 (55%), Gaps = 12/312 (3%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DNA+DE +AG+A  ++V L+ +  +TV D+GRGIPV+ H K   
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHATRVDVILNADNSVTVRDDGRGIPVDIH-KGEG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALS +L + + R N     +F+ 
Sbjct: 60  ISAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAH 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  ++PL+       KRGT +TF    + F +   +D A L    +  A+L+  V    S
Sbjct: 120 GDAVAPLKVVGDAPGKRGTEVTFLASTETFKN-IEYDFATLEHRLRELAFLNSGVNIALS 178

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   EK      EE Y+ GG++ +++    N+  +       ++E  G     VE A+
Sbjct: 179 DMRHAVEKR-----EEMYYSGGVEEFVKYLDRNKKALVPAPIMVRSEANGI---GVEAAL 230

Query: 307 AWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
            W +   E    + N I   +GGTH +G R ALTR +  YAE    K  I++  DD    
Sbjct: 231 WWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQVNGYAEANAKKEKIALTGDDCREG 290

Query: 366 AVGILSVFIREP 377
              +LSV + +P
Sbjct: 291 LTAVLSVKVPDP 302


>gi|254390879|ref|ZP_05006090.1| DNA topoisomerase II [Streptomyces clavuligerus ATCC 27064]
 gi|294816152|ref|ZP_06774795.1| DNA topoisomerase II [Streptomyces clavuligerus ATCC 27064]
 gi|326444485|ref|ZP_08219219.1| putative DNA gyrase B subunit [Streptomyces clavuligerus ATCC
           27064]
 gi|197704577|gb|EDY50389.1| DNA topoisomerase II [Streptomyces clavuligerus ATCC 27064]
 gi|294328751|gb|EFG10394.1| DNA topoisomerase II [Streptomyces clavuligerus ATCC 27064]
          Length = 643

 Score =  260 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 126/396 (31%), Positives = 191/396 (48%), Gaps = 18/396 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +Y A +I +  GLE VR  P MY+G T     HHL  E++DNA+DE  AG+   I V 
Sbjct: 2   TTDYTAEAITVHSGLEAVRRNPSMYVGSTGPDGAHHLVLELVDNAVDEAAAGHCGAISVE 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +G  +V D+GRGIP + HP        E++LTTLH+GGKFD+S+Y  S GLHGVG++
Sbjct: 62  LYDDGSCSVTDDGRGIPTDPHP-AAGVPACELVLTTLHSGGKFDDSSYATSAGLHGVGLA 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
            VNALS+ L + V R     S+ F+RG   +PL++     ++RG+R+ FRPDP+IF    
Sbjct: 121 CVNALSEWLRLDVWRDGAHHSESFARGSVETPLKRVGD-SDRRGSRVWFRPDPEIFSSCL 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
                 +       AYL   ++   +  +           E      G++  L  +  + 
Sbjct: 180 LDT-DLVHARLLDIAYLHPGLRVELTDHR-------TGRHESLCETTGVRGLLAYRAHDA 231

Query: 281 SLISSEIFTGKTEKKG-THRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339
             + +E  T      G      V+W   + E   +I SY NT+ TD GG+H   LR    
Sbjct: 232 EKVHAEPTTIAWAGDGCVIDAAVQWTEGYAE---QIFSYVNTVRTDLGGSHVDALR---- 284

Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           R +           A  +   D++     ++++   +  F GQTK  L + DA   V + 
Sbjct: 285 RALAGVVADHLGPSADRMTVVDILEGLTAVIAIRTPDARFDGQTKRTLRNDDAGARVFDV 344

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           + +     L  +P  A ++ E  I+ S  RL  R  
Sbjct: 345 VTEQARRALAADPELARRIAERAIDASRARLAARLA 380


>gi|148470207|gb|ABQ66051.1| gyrase b [uncultured bacterium]
          Length = 419

 Score =  260 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 159/426 (37%), Positives = 238/426 (55%), Gaps = 12/426 (2%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD  +Y++SGGLHGVG+SVVNALS++L +T+          F+ G P 
Sbjct: 1   EVIMTVLHAGGKFDQESYKVSGGLHGVGVSVVNALSEKLQLTIYANGKKHFMSFTHGDPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
             L    +   K GT +TF P  + F     FD   L    +  A+L+  V      ++ 
Sbjct: 61  ERLRVVGESEGKTGTEVTFLPSKETFSFTV-FDFGTLEHRLRELAFLNSGVTLILRDERH 119

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH-RGTVEWAIAWC 309
           +  K         ++ GG++ ++     +++ + S     + EK+G      +EW  ++ 
Sbjct: 120 VDIKE-----VVLHYEGGIQAFVAYLDRSKNALHSPSIFIQGEKEGIIVDLAMEWTDSYH 174

Query: 310 EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGI 369
           E       + N I   EGG+H +G R ALTR I  YA     K  +S+  +D+      +
Sbjct: 175 E---TTLCFTNNIPQREGGSHLAGFRGALTRTINAYAAEMGKKEKLSLTGEDMREGLTCV 231

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           LSV + +P+F+ QTK KLVS + +  VE  + D F  +L ++P++A K++E ++E +  R
Sbjct: 232 LSVKVPDPKFSSQTKDKLVSSEVRPVVEGIVADKFQQWLEEHPLDAEKIIERIMEAALAR 291

Query: 430 LRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
              RK RE+ R+   +    LPGKLADC +     +E+FIVEGD AGGSAKQ R R  QA
Sbjct: 292 EAARKARELTRRKGVLDIASLPGKLADCQERDPAKSEIFIVEGDGAGGSAKQGRRRQYQA 351

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVD 547
           +LPLRGK+LNV  A  +K+ +++QI  L+ ALG        +    RY K+I+MTDADVD
Sbjct: 352 ILPLRGKVLNVERARFDKMLHSEQIGTLITALGMGIGRDDFDVNKARYHKIILMTDADVD 411

Query: 548 GAHIAS 553
           G+HI +
Sbjct: 412 GSHIRT 417


>gi|18916429|dbj|BAB85507.1| DNA gyrase subunit B [Bradyrhizobium japonicum]
 gi|18916444|dbj|BAB85512.1| DNA gyrase subunit B [Bradyrhizobium japonicum]
 gi|18916451|dbj|BAB85514.1| DNA gyrase subunit B [Bradyrhizobium japonicum]
 gi|18916455|dbj|BAB85515.1| DNA gyrase subunit B [Bradyrhizobium japonicum]
 gi|18916458|dbj|BAB85516.1| DNA gyrase subunit B [Bradyrhizobium japonicum]
 gi|18916462|dbj|BAB85517.1| DNA gyrase subunit B [Bradyrhizobium japonicum]
 gi|19979605|dbj|BAB88758.1| subunit B protein of DNA gyrase [Bradyrhizobium japonicum]
 gi|19979607|dbj|BAB88759.1| subunit B protein of DNA gyrase [Bradyrhizobium japonicum]
          Length = 303

 Score =  260 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 116/313 (37%), Positives = 171/313 (54%), Gaps = 12/313 (3%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DNA+DE +AG+A  ++V L+ +  +TV D+GRGIPV+ H K   
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHATRVDVVLNADNSVTVRDDGRGIPVDIH-KGEG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALS +L + + R N     +F+ 
Sbjct: 60  ISAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAH 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  ++PL        KRGT +TF   P  F +   +D A L    +  A+L+  V    S
Sbjct: 120 GDAVAPLVVVGDAPGKRGTEVTFLASPDTFKN-IEYDFATLEHRLRELAFLNSGVNIALS 178

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   EK      EE ++ GG++ +++    N+  I       + E  G     VE A+
Sbjct: 179 DMRHAVEKR-----EEMHYSGGVEEFVKYLDRNKKAIVPAPIMVRAEANGI---GVEAAL 230

Query: 307 AWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
            W +   E    + N I   +GGTH +G R ALTR +  YAE    K  I++  DD    
Sbjct: 231 WWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQVNGYAEANAKKEKIALTGDDCREG 290

Query: 366 AVGILSVFIREPE 378
              +LSV + +P+
Sbjct: 291 LTAVLSVKVPDPK 303


>gi|115395406|gb|ABH11185.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395408|gb|ABH11186.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395410|gb|ABH11187.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395412|gb|ABH11188.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395414|gb|ABH11189.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395416|gb|ABH11190.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395418|gb|ABH11191.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395420|gb|ABH11192.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395422|gb|ABH11193.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395424|gb|ABH11194.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395426|gb|ABH11195.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395428|gb|ABH11196.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395430|gb|ABH11197.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395432|gb|ABH11198.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395434|gb|ABH11199.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395436|gb|ABH11200.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395438|gb|ABH11201.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395440|gb|ABH11202.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395442|gb|ABH11203.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395444|gb|ABH11204.1| DNA gyrase B [Listeria monocytogenes]
          Length = 220

 Score =  260 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 94/209 (44%), Positives = 128/209 (61%), Gaps = 2/209 (0%)

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 14  RKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILN 73

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 74  VEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTL 133

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+K
Sbjct: 134 FYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYK 191

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINK 647
           GLGEM   QL +T M+   RTLL+V I  
Sbjct: 192 GLGEMNPEQLWDTTMNPEHRTLLQVNIKD 220


>gi|148616462|gb|ABQ96974.1| GyrB [Nocardiopsis lucentensis]
          Length = 424

 Score =  260 bits (663), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 152/430 (35%), Positives = 234/430 (54%), Gaps = 10/430 (2%)

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
           +E+I+T LHAGGKFD  +Y +SGGLHGVG+SVVNALS  L V + +   +++Q +    P
Sbjct: 1   IEVIMTVLHAGGKFDGKSYAVSGGLHGVGVSVVNALSTALDVEIRKDGHVWTQHYEMTAP 60

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
              L  + +  ++ GT+ITF PD  IF     F    L +  Q  A+L+  +      ++
Sbjct: 61  TGDL-VRGEETDETGTQITFWPDGDIFETTV-FTFETLARRMQEMAFLNKGLSITIRDER 118

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
                 G P    F++  GL  Y++     +    + I + + +  G    +VE A+ W 
Sbjct: 119 -PEHTDGGPTVNTFHYDEGLSDYVRHINAKKEPAHASIISFEEDGDGI---SVEIAMQWN 174

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISA 366
           +     + ++ NTI T EGGTH  G R ALT  + +YA   +    +  ++  DD+    
Sbjct: 175 QSYTSSVHTFANTINTAEGGTHGEGFRSALTTLVNRYARDQKLLRDKDDNLTGDDIREGL 234

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIER 425
             I+SV + +P+F GQTKTKL + +A+  V+    +    +  +NP EA  ++ +     
Sbjct: 235 TSIISVKLADPQFEGQTKTKLGNTEAKSFVQRVTNEHLRDWFERNPGEAKDIVSKASQAA 294

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
                 R+ +    RKT +    LPGKL+DC        E++IVEGDSAGGSAK  R+  
Sbjct: 295 RARIAARQARDLTRRKTLLESTSLPGKLSDCQSTNPEECEVYIVEGDSAGGSAKGGRDPH 354

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545
           +QA+LP+RGKILNV  +  ++I  N ++  ++ ALG      +  + LRY K+I+MTDAD
Sbjct: 355 HQAILPIRGKILNVEKSRIDRILKNNEVQAIITALGTGIHEDFDADKLRYHKIILMTDAD 414

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 415 VDGSHIRTLL 424


>gi|119369990|gb|ABL68009.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 420

 Score =  260 bits (663), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 159/430 (36%), Positives = 251/430 (58%), Gaps = 15/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+  ++ Q++  G P+
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSTKLTLAIRREGELWEQEYHCGDPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+  K   +  RGT + F PDP++F     F  ARL K  +  AYL+  +    + ++ 
Sbjct: 61  APIAAKGPAKG-RGTTVHFWPDPEVFES-TEFSFARLEKRFRELAYLNDGLTILLNDERG 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             ++ G+     +++ GG+  ++    ++R  +   +   K ++ G     V+ AI W +
Sbjct: 119 DRKREGV-----YHYEGGVAAFVLDINKSREAVHPTVIRIKGDRDGVM---VDTAIQWND 170

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R A+TR +  Y E      K  ++I + D+     
Sbjct: 171 GYNESVFPFTNNIPQVDGGTHLTGFRSAMTRVLGGYMEREGIATKAKVTIDAADMREGMT 230

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE+ + +    +L + P EA  +   ++E ++
Sbjct: 231 AVLSVKVPDPKFSSQTKDKLVSSEVRPIVESVIAEGVRTFLDEKPKEAQAICAKIVEAAK 290

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK R+   RK A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R  
Sbjct: 291 AREAARKARDLTRRKGALDIANLPGKLADCQEKDPALCEIYLVEGDSAGGSAKQGRDRKF 350

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +++  + +I  L+ ALG            LRY ++IIMTDAD
Sbjct: 351 QAILPLKGKILNVERARFDRMLESDEIGTLITALGTGIGQDEFNAGKLRYHRIIIMTDAD 410

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 411 VDGSHIRTLL 420


>gi|209863958|gb|ACI88898.1| GyrB [Acidithiobacillus ferrooxidans]
          Length = 418

 Score =  259 bits (662), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 160/430 (37%), Positives = 250/430 (58%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD++ Y++SGGLHGVG+SVVNALS+ L + + R   +++Q++  G P 
Sbjct: 1   EVIMTVLHAGGKFDDNAYKVSGGLHGVGVSVVNALSETLQLRIFRDGYVWTQEYHDGEPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+ +  +   K G+ I F+P P++F D   F    + K  +  A+L+  V      ++ 
Sbjct: 61  APVAR-GEASRKHGSTIRFKPSPQVFADTH-FHFEIIAKRLRELAFLNSGVHITLLDERG 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       E F++ GG++ +++    +++ I   + T   E+ G     VE A+ W E
Sbjct: 119 GRE-------EVFHYEGGIRAFVEHLNRSKTAIHPTVITLSGERDGI---VVEAALQWNE 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR + +Y E      K  + +  +D      
Sbjct: 169 GYSEAVLCFTNNIPKTDGGTHLAGFRGALTRTLNQYMEREGIITKAKVVVSGEDTREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  V +++ +    +L ++P EA  +   ++E + 
Sbjct: 229 AVLSVKVPDPKFSSQTKEKLVSSEVKPIVXSSMSEALTIFLDEHPKEAQAIAAKIVEAAR 288

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   R+ RE   RK A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R +
Sbjct: 289 AREAARRARELTRRKGALDIANLPGKLADCQEKDPAKCEIYLVEGDSAGGSAKQGRDRRH 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++ +I  L+ ALG    +   +   LRY +VIIMTDAD
Sbjct: 349 QAILPLKGKILNVERARFDKMLSSDEIGTLITALGTGIGAGDFDVAKLRYHRVIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|148971421|gb|ABR20248.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 417

 Score =  259 bits (662), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 160/429 (37%), Positives = 247/429 (57%), Gaps = 16/429 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+ELH+ V R   I+ Q +  G P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLNVHRDGHIYEQHYHHGTPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+       +  GT I F+P    F +   F    L K  +  ++L+  V  C + ++ 
Sbjct: 61  NPIAVTGDTTD-SGTSIWFKPSSDTFTNIN-FHYDILAKRLRELSFLNSGVCICLTDERS 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   ++++F + GG+K +++    N++ I  E+F+    K      TVE ++ W +
Sbjct: 119 -------GKQDKFQYEGGIKAFVEHLNRNKNPIMPEVFSMTGVKDDV---TVELSMQWND 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R ALTR +  Y E      K      +  L+  + 
Sbjct: 169 SYQENIFCFTNNIPQKDGGTHLAGFRGALTRTLNNYIESEGYAKKLKSPPSATTLVKGST 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE+ + + F ++L++ P  A  ++  +IE + 
Sbjct: 229 AVLSVKVHDPKFSSQTKDKLVSSEVKAAVESLVSEYFHNFLLERPTIAKTIVNKMIEAAR 288

Query: 428 ERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   R+      RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ R+R  
Sbjct: 289 AREAARRARDMTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRDRKF 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADV 546
           QA+LPL+GKILNV  A  +K+ ++Q++  +          +Y  + +RY ++IIMTDADV
Sbjct: 349 QAILPLKGKILNVEKARFDKMLSSQEVALITALGCGIGPDEYDPDKIRYHRIIIMTDADV 408

Query: 547 DGAHIASLL 555
           DG+HI +LL
Sbjct: 409 DGSHIRTLL 417


>gi|198250529|gb|ACH85246.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  259 bits (662), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 155/415 (37%), Positives = 232/415 (55%), Gaps = 15/415 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKF    Y++SGGLHGVG+SVVNALS +L V V R+  ++ Q++  G P   +++  
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSKKLEVQVKREGKVYQQEYRCGAPQYDIKEIG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +     GT++TF PD +IF +   +D   L    +  A+L+  ++   + ++        
Sbjct: 61  E-SEMTGTQVTFWPDEEIFTETTEYDFDTLQSRIRELAFLNKGIEIVLTDER-------T 112

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
              + F + GG+ ++++   +NR  +       + EK       VE A+ + +     I 
Sbjct: 113 DISQTFIYEGGIISFVEHLNQNREPVHQPPIYVEGEKDHIQ---VEVALQYNDSYTENIY 169

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
           S+ N I T EGGTHESG + ALTR + +YA       +   ++  DD+      I+SV I
Sbjct: 170 SFANNINTHEGGTHESGFKSALTRILNEYARKYNAIKESDANLSGDDVREGLTAIISVKI 229

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRR 433
            +P+F GQTKTKL + + +  VE+   +  + +L +NP  A K++E  V  +      R+
Sbjct: 230 PDPQFEGQTKTKLGNSEVRGIVESLFAEKLEEFLQENPAIAKKIVEKGVQAQRAREAARK 289

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            +    RK+A+    LPGKLADCS   A  +E++IVEGDSAGGSAKQ R+   QA+LPLR
Sbjct: 290 ARELTRRKSALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDHHFQAILPLR 349

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           GKILNV  A  +KI +N +I  ++  LG      +     RY K+IIMTDADVDG
Sbjct: 350 GKILNVEKARLDKILSNAEIRAIITTLGTGIGEDFDISKARYHKIIIMTDADVDG 404


>gi|86604463|emb|CAJ76129.1| DNA gyrase B subunit [Shewanella psychrophila]
          Length = 418

 Score =  259 bits (662), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 161/429 (37%), Positives = 249/429 (58%), Gaps = 16/429 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L +T+ R   ++ Q +S G P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLQLTIRRNGKLYEQFYSMGEPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+++     +  GT + F P  + F D   F    L+K  +  ++L+  V      +++
Sbjct: 61  APIKEIGDSTS-TGTELRFWPSHETFSDTL-FHFDILVKRVRELSFLNSGVGIRLVDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             +       E F + GG+  ++     N++ ++ ++F    E++     TVE A+ W +
Sbjct: 119 NRD-------EFFQYQGGISAFVDYLNVNKTPVNKDVFHFIQERED--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R ALTR +  Y E      K   S   DD      
Sbjct: 170 GFQENIFCFTNNIPQRDGGTHLAGFRGALTRNLNAYMEREGYNKKGKTSATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +    YL+++P EA  ++  +I+   
Sbjct: 230 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGEQLGDYLMEHPNEAKLIVGKIIDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARKAREMTRRKGALDLGGLPGKLADCQEKDPALSEIYIVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  +  RY  ++IMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYDPDKTRYHNIVIMTDAD 409

Query: 546 VDGAHIASL 554
           VDG+HI +L
Sbjct: 410 VDGSHIRTL 418


>gi|198250533|gb|ACH85248.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
 gi|198250537|gb|ACH85250.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
 gi|199599923|gb|ACH91039.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
 gi|253826356|gb|ACT36481.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
 gi|253826374|gb|ACT36490.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
 gi|253826380|gb|ACT36493.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  259 bits (662), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 157/415 (37%), Positives = 234/415 (56%), Gaps = 15/415 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKF    Y++SGGLHGVG+SVVNALS +L V V R+  ++ Q++  G P   +++  
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSKKLEVQVKREGKVYQQEYRCGAPQYDIKEIG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +     GT++TF PD +IF +   +D   L    +  A+L+  ++   + ++        
Sbjct: 61  E-SEMTGTQVTFWPDEEIFTETTEYDFDTLQSRIRELAFLNKGIEIVLTDER-------T 112

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
              + F + GG+ ++++   +NR  +       + EK       VE A+ + +     I 
Sbjct: 113 DISQTFIYEGGIISFVEHLNQNREPVHQPPIYVEGEKDHIQ---VEVALQYNDSYTENIY 169

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
           S+ N I T EGGTHESG + ALTR + +YA       +   ++  DD+      I+SV I
Sbjct: 170 SFANNINTHEGGTHESGFKSALTRILNEYARKYNAIKESDANLSGDDVREGLTAIISVKI 229

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRR 433
            +P+F GQTKTKL + + +  VE+   +  + +L +NP  A K++E  V  +      R+
Sbjct: 230 PDPQFEGQTKTKLGNSEVRGIVESLFAEKLEEFLQENPAIAKKIVEKGVQAQRAREAARK 289

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            +    RK+A+    LPGKLADCS   A  +E++IVEGDSAGGSAKQ R+R  QA+LPLR
Sbjct: 290 ARELTRRKSALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLR 349

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           GKILNV  A  +KI +N +I  ++ ALG      +     RY K+IIMTDADVDG
Sbjct: 350 GKILNVEKARLDKILSNAEIRAIITALGTGIGEDFDISKARYHKIIIMTDADVDG 404


>gi|222103609|gb|ACM44313.1| GyrB [Shewanella marisflavi]
          Length = 419

 Score =  259 bits (662), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 164/430 (38%), Positives = 248/430 (57%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L +T+ R+  ++ Q ++ G P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLQLTIRREGKLYEQFYTMGEPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            P+++     N  GT I F P  + F D   F    L K  +  ++L+  V      +++
Sbjct: 61  EPIKEIGDATN-TGTEIRFWPSSQTFSD-VEFHFDILAKRVRELSFLNSGVGIRLVDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             +       E F + GG+  ++     N++ ++ EIF    E++     TVE A+ W +
Sbjct: 119 NKD-------EFFKYEGGISAFVDYLNINKTPVNKEIFHFVQERED--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAV 367
                I  + N I   +GG H +G R ALTR +  Y +      K   S   DD      
Sbjct: 170 GFQENIFCFTNNIPQRDGGAHLAGFRSALTRNLNTYMDREGFNKKGKTSATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP EA  ++  +I+   
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEKLGDYLLENPNEAKLIVGKIIDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARKAREMTRRKGALDLGGLPGKLADCQEKDPALSEIYIVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  +  RY  ++IMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYDPDKTRYHNIVIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHIRTLL 419


>gi|29652952|gb|AAO87445.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652956|gb|AAO87447.1| DNA gyrase B [Listeria monocytogenes]
          Length = 215

 Score =  259 bits (662), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 98/217 (45%), Positives = 134/217 (61%), Gaps = 3/217 (1%)

Query: 428 ERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            RL  ++ REV  + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  
Sbjct: 1   ARLAAKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLF 60

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADV 546
           QA+LP+RGKILNV  A  ++I  N++I  +  A+G      +     RY K+IIMTDADV
Sbjct: 61  QAILPIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADV 120

Query: 547 DGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKK 606
           DGAHI +LLLT FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L     
Sbjct: 121 DGAHIRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL-- 178

Query: 607 HGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRV 643
            G  K  I R+KGLGEM   QL +T M+   RTLL+V
Sbjct: 179 DGDTKYSIQRYKGLGEMNPEQLWDTTMNPEHRTLLQV 215


>gi|253826362|gb|ACT36484.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 156/415 (37%), Positives = 233/415 (56%), Gaps = 15/415 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKF    Y++SGGLHGVG+SVVNALS +L V V R+  ++ Q++  G P   +++  
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSKKLEVQVKREGKVYQQEYRCGAPQYDIKEIG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +     GT++TF PD +IF +   +D   L    +  A+L+  ++   + ++        
Sbjct: 61  E-SEMTGTQVTFWPDEEIFTETTEYDFDTLQSRIRELAFLNKGIEIVLTDER-------T 112

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
              + F + GG+ ++++   +NR  +       + EK       VE A+ + +     I 
Sbjct: 113 DISQTFIYEGGIISFVEHLNQNREPVHQPPIYVEGEKDHIQ---VEVALQYNDSYTENIY 169

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
           S+ N I T EGGTHESG + ALTR + +YA       +   ++  DD+      I+SV I
Sbjct: 170 SFANNINTHEGGTHESGFKSALTRILNEYARKYNAIKESDANLSGDDVREGLTAIISVKI 229

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRR 433
            +P+F GQTKTKL + + +  VE+   +  + +L +NP  A K++E  V  +      R+
Sbjct: 230 PDPQFEGQTKTKLGNSEVRGIVESLFAEKLEEFLQENPAIAKKIVEKGVQAQRAREAARK 289

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            +    RK+A+    LPGKLADCS   A  +E++IVEGDSAGGSAKQ R+R  QA+LPLR
Sbjct: 290 ARELTRRKSALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLR 349

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           GKILNV  A  +K  +N +I  ++ ALG      +     RY K+IIMTDADVDG
Sbjct: 350 GKILNVEKARLDKTLSNAEIRAIITALGTGIGEDFDISKARYHKIIIMTDADVDG 404


>gi|119369976|gb|ABL68002.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 420

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 159/430 (36%), Positives = 251/430 (58%), Gaps = 15/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+  ++ Q++  G P+
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSTKLTLAIRREGELWEQEYHCGDPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+  K   +  RGT + F PDP++F     F  ARL K  +  AYL+  +    + ++ 
Sbjct: 61  APIAAKGPAKG-RGTTVHFWPDPEVFES-TEFSFARLEKRFRELAYLNDGLTILLNDERG 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             ++ G+     +++ GG+  ++    ++R  +   +   K ++ G     V+ AI W +
Sbjct: 119 DRKREGV-----YHYEGGVAAFVLDINKSREAVHPTVIRIKGDRDGVM---VDTAIQWND 170

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R A+TR +  Y E      K  ++I + D+     
Sbjct: 171 GYNESVFPFTNNIPQVDGGTHLTGFRSAMTRVLGGYMEREGIATKAKVTIDAADMREGMT 230

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE+ + +    +L + P EA  +   ++E ++
Sbjct: 231 AVLSVKVPDPKFSSQTKDKLVSSEVRPIVESVIAEGVGTFLDEKPKEAQAICAKIVEAAK 290

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK R+   RK A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R  
Sbjct: 291 AREAARKARDLTRRKGALDIANLPGKLADCQEKDPALCEIYLVEGDSAGGSAKQGRDRKF 350

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +++  + +I  L+ ALG            LRY ++IIMTDAD
Sbjct: 351 QAILPLKGKILNVERARFDRMLESDEIGTLITALGTGIGQDEFNAGKLRYHRIIIMTDAD 410

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 411 VDGSHIRTLL 420


>gi|119369906|gb|ABL67967.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 420

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 155/430 (36%), Positives = 246/430 (57%), Gaps = 15/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+  ++ Q++  G P+
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSTKLTLAIRREGELWEQEYHCGDPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+  K   +  RGT + F PDP++F     F  ARL K  +  AYL+  +    + ++ 
Sbjct: 61  APIAAKGPAKG-RGTTVHFWPDPEVFES-TEFSFARLEKRFRELAYLNDGLTILLNDERG 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             ++ G+     +++ GG+  ++    ++R  +   +   K ++ G     V+ AI W +
Sbjct: 119 DRKREGV-----YHYEGGVAAFVLDINKSREAVHPTVIRIKGDRDGVM---VDTAIQWND 170

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R A+TR +  Y E      K  ++I + D+     
Sbjct: 171 GYNESVFPFTNNIPQVDGGTHLTGFRSAMTRVLGGYMEPEGIATKAKVTIDAADMREGMT 230

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERS 426
            +LSV + +P+F+ QTK KLVS + +  VE+ + +    +L + P EA  +   ++    
Sbjct: 231 AVLSVKVPDPKFSSQTKDKLVSSEVRPIVESVIAEGVGTFLDEKPKEAQAICAKIVEAAK 290

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R  
Sbjct: 291 AREAARKARDLTRRKGALDIANLPGKLADCQEKDPALCEIYLVEGDSAGGSAKQGRDRKF 350

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +++  + +I  L+ ALG            LRY ++IIMTDAD
Sbjct: 351 QAILPLKGKILNVERARFDRMLESDEIGTLITALGTGIGQDEFNAGKLRYHRIIIMTDAD 410

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 411 VDGSHIRTLL 420


>gi|119369992|gb|ABL68010.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 160/430 (37%), Positives = 251/430 (58%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD++ Y++SGGLHGVG+SVVNALS+ L + + R   +++Q++  G P 
Sbjct: 1   EVIMTVLHAGGKFDDNAYKVSGGLHGVGVSVVNALSETLQLRIFRDGYVWTQEYHDGEPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+ +  +   K G+ I F+P P++F D   F    + K  +  A+L+  V      ++ 
Sbjct: 61  APVAR-GEASRKHGSTIRFKPSPQVFADTH-FHFEIIAKRLRELAFLNSGVHITLLDERG 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       E F++ GG++ +++    +++ I   + T   E+ G     VE A+ W E
Sbjct: 119 GRE-------EVFHYEGGIRAFVEHLNRSKTAIHPTVITLNGERDGI---VVEAALQWNE 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR + +Y E      K  + +  +D      
Sbjct: 169 GYSEAVLCFTNNIPQTDGGTHLAGFRGALTRTLNQYMEREGIIAKAKVVVSGEDTREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE+++ +    +L ++P EA  +   ++E + 
Sbjct: 229 AVLSVKVPDPKFSSQTKEKLVSSEVKPIVESSMSEALTIFLDEHPKEAQAIAAKIVEAAR 288

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   R+ RE   RK A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R +
Sbjct: 289 AREAARRARELTRRKGALDIANLPGKLADCQEKDPAKCEIYLVEGDSAGGSAKQGRDRRH 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++ +I  L+ ALG    +   +   LRY +VII+TDAD
Sbjct: 349 QAILPLKGKILNVERARFDKMLSSDEIGTLITALGTGIGAGDFDVAKLRYHRVIIITDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|253826384|gb|ACT36495.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 157/415 (37%), Positives = 233/415 (56%), Gaps = 15/415 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKF    Y++SGGLHGVG+SVVNALS +L V V R+  ++ Q++  G P   +++  
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSKKLEVQVKREGKVYQQEYRCGAPQYDIKEIG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
                 GT++TF PD +IF +   +D   L    +  A+L+  ++   + ++        
Sbjct: 61  G-SEMTGTQVTFWPDEEIFTETTEYDFDTLQSRIRELAFLNKGIEIVLTDER-------T 112

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
              + F + GG+ ++++   +NR  +       + EK       VE A+ + +     I 
Sbjct: 113 DISQTFIYEGGIISFVEHLNQNREPVHQPPIYVEGEKDHIQ---VEVALQYNDSYTENIY 169

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
           S+ N I T EGGTHESG + ALTR + +YA       +   ++  DD+      I+SV I
Sbjct: 170 SFANNINTHEGGTHESGFKSALTRILNEYARKYNAIKESDANLSGDDVREGLTAIISVKI 229

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRR 433
            +P+F GQTKTKL + + +  VE+   +  + +L +NP  A K++E  V  +      R+
Sbjct: 230 PDPQFEGQTKTKLGNSEVRGIVESLFAEKLEEFLQENPAIAKKIVEKGVQAQRAREAARK 289

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            +    RK+A+    LPGKLADCS   A  +E++IVEGDSAGGSAKQ R+R  QA+LPLR
Sbjct: 290 ARELTRRKSALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLR 349

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           GKILNV  A  +KI +N +I  ++ ALG      +     RY K+IIMTDADVDG
Sbjct: 350 GKILNVEKARLDKILSNAEIRAIITALGTGIGEDFDISKARYHKIIIMTDADVDG 404


>gi|253826378|gb|ACT36492.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 157/415 (37%), Positives = 234/415 (56%), Gaps = 15/415 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKF    Y++SGGLHGVG+SVVNALS +L V V R+  ++ Q++  G P   +++  
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSKKLEVQVKREGKVYQQEYRCGAPQYDIKEIG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +     GT++TF PD +IF +   +D   L    +  A+L+  ++   + ++        
Sbjct: 61  E-SEMTGTQVTFWPDEEIFTETTEYDFDTLQSRIRELAFLNKGIEIVLTDER-------T 112

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
              + F + GG+ ++++   +NR  +       + EK       VE A+ + +     I 
Sbjct: 113 DISQTFIYEGGIISFIEHLNQNREPVHQPPIYVEGEKDHIQ---VEVALQYNDSYTENIY 169

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
           S+ N I T EGGTHESG + ALTR + +YA       +   ++  DD+      I+SV I
Sbjct: 170 SFANNINTHEGGTHESGFKSALTRILNEYARKYNAIKESDANLSGDDVREGLTAIISVKI 229

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRR 433
            +P+F GQTKTKL + + +  VE+   +  + +L +NP  A K++E  V  +      R+
Sbjct: 230 PDPQFEGQTKTKLGNSEVRGIVESLFAEKLEEFLQENPAIAKKIVEKGVQAQRAREAARK 289

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            +    RK+A+    LPGKLADCS   A  +E++IVEGDSAGGSAKQ R+R  QA+LPLR
Sbjct: 290 ARELTRRKSALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLR 349

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           GKILNV  A  +KI +N +I  ++ ALG      +     RY K+IIMTDADVDG
Sbjct: 350 GKILNVEKARLDKILSNAEIRAIITALGTGIGEDFDISKARYHKIIIMTDADVDG 404


>gi|148971425|gb|ABR20250.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 167/430 (38%), Positives = 256/430 (59%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+ LH+ + R+  +  Q++  G  +
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEHLHLLIKREGKLHEQEYRNGDAV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            PL+     +   GT I F+P  K+F     F+   L +  +  ++L+  V+      ++
Sbjct: 61  YPLQVVADAQG-TGTEIRFKPSAKVF-THIQFNYDILARRLRELSFLNSGVRILLHDQRD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + + F + GG+K +++    N++ +   +F    E +   R TVE A+ W +
Sbjct: 119 -------DKHDVFQYQGGIKAFVEHLNRNKTALHETVFHSIAEHE---RTTVEIALQWND 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR I  Y E      K  I +  DD      
Sbjct: 169 SYQETVYCFTNNIPQRDGGTHLAGFRAALTRTINNYIETEGLLKKEKIPMTGDDAREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
           GI+SV + +P+F+ QTK KLVS + +  VE+ +   F+ +L++ P+E+  ++  VIE + 
Sbjct: 229 GIVSVKLPDPKFSSQTKDKLVSSEVKGVVESLMAGKFEEFLLEKPVESKIIVGKVIEAAR 288

Query: 428 ERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK RE+  RK A+    LPGKLADC +     +ELF+VEGDSAGGSAKQ R+R  
Sbjct: 289 AREAARKDREMTRRKGALDVAGLPGKLADCQERDPALSELFLVEGDSAGGSAKQGRDRKC 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++ ++  L+ ALGC   + ++  + LRY ++IIMTDAD
Sbjct: 349 QAILPLKGKILNVEKARFDKMLSSVEVGTLITALGCGIGKEEFNIDKLRYHRIIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|253826368|gb|ACT36487.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 157/415 (37%), Positives = 233/415 (56%), Gaps = 15/415 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKF    Y++SGGLHGVG+SVVNALS +L V V R+  ++ Q++  G P   +++  
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSKKLEVQVKREGKVYQQEYRCGAPQYDIKEIG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +     GT++TF PD +IF +   +D   L    +  A+L+  ++   + ++        
Sbjct: 61  E-SEMTGTQVTFWPDEEIFTETTEYDFDTLQSRIRELAFLNKGIEIVLTDER-------T 112

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
              + F + GG+ ++++   +NR  +       + EK       VE A+ + +     I 
Sbjct: 113 DISQTFIYEGGIISFVEHLNQNREPVHKPPIYVEGEKDHIQ---VEVALQYNDSYTENIY 169

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
           S+ N I T EGGTHESG + ALTR + +YA       +   ++  DD+      I+SV I
Sbjct: 170 SFANNINTHEGGTHESGFKSALTRILNEYARKYNAIKESDANLSGDDVREGLTAIISVKI 229

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRR 433
            +P+F GQTKTKL + + +  VE+   +  + +L +NP  A K++E  V  +      R+
Sbjct: 230 PDPQFEGQTKTKLGNSEVRGIVESLFAEKLEEFLQENPAIAKKIVEKGVQAQRAREAARK 289

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            +    RK+A+    LPGKLADCS   A  +E++IVEGDSAGGSAKQ R+R  QA+LPLR
Sbjct: 290 ARELTRRKSALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLR 349

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           GKILNV  A  +KI +N +I  ++ ALG            RY K+IIMTDADVDG
Sbjct: 350 GKILNVEKARLDKILSNAEIRAIITALGTGIGEDLDISKARYHKIIIMTDADVDG 404


>gi|119369948|gb|ABL67988.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 422

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 161/431 (37%), Positives = 236/431 (54%), Gaps = 15/431 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG-IP 189
           E+I+T LHAGGKF  S Y++SGGLHGVG+SVVNALS  L + + R       +F  G  P
Sbjct: 1   EVIMTVLHAGGKFGGSGYKVSGGLHGVGVSVVNALSSSLTLEIDRDGNHHQLEFRDGGKP 60

Query: 190 LSPLEKKEKVRN-KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
              L         + GT +TF PDP IF +   F A  + +  Q  A+L+  ++  ++  
Sbjct: 61  QGGLRVTGPAPGGRTGTTVTFVPDPTIFDEV-EFRAQTVTERLQIMAFLNRGLEIRFTDQ 119

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +      G   KE F + GG+  Y++     +  +  ++   +  ++G     VE A  W
Sbjct: 120 R-----AGRAAKEVFKYSGGIVDYVRHLNNTKESLFRKVGYYEQSEEG---QEVEVAFQW 171

Query: 309 CE-ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
                  I S+ N I T EGG HE G R A+T  I +YA       ++  ++  +D+   
Sbjct: 172 NTGYYESIHSFANGIATIEGGMHEEGFRKAITNVINRYARKRNLLKEKEENLKGEDIREG 231

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              I+SV + +P+F GQTK KL ++  +  VE A  +    +L +NP E  +++   I+ 
Sbjct: 232 LTAIVSVRLADPQFEGQTKGKLGNVSIRSLVERATNEKLADWLEENPREGGQVVAKAIQA 291

Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           S  R+  +  R+   RK A+    LPGKL DCS       ELFIVEG+SAGGSAK AR+ 
Sbjct: 292 SRSRMAAQHARDLTRRKNALDGAGLPGKLVDCSSRDPRECELFIVEGNSAGGSAKDARDP 351

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA+LP+RGKILNV  A S+KI  N +I  L+ A+G    + +    +RY+K+I++TDA
Sbjct: 352 RTQAILPIRGKILNVEKARSDKILKNTEIQALIAAIGAGVEADFDVSKVRYDKIILLTDA 411

Query: 545 DVDGAHIASLL 555
           DVDG+HI +LL
Sbjct: 412 DVDGSHIRTLL 422


>gi|253826366|gb|ACT36486.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 156/415 (37%), Positives = 233/415 (56%), Gaps = 15/415 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKF    Y++SGGLHGVG+SVVNALS +L V V R+  ++ Q++  G P   +++  
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSKKLEVQVKREGKVYQQEYRCGAPQYDIKEIG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +     GT++TF PD +IF +   +D   L    +  A+L+  ++   + ++        
Sbjct: 61  E-SEMTGTQVTFWPDEEIFTETTEYDFDTLQSRIRELAFLNKGIEIVLTDER-------T 112

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
              + F + GG+ ++++   +NR  +       + EK       VE A+ + +     I 
Sbjct: 113 DISQTFIYEGGIISFVEHLNQNREPVHQPPIYVEGEKDHIQ---VEVALQYNDSYTENIY 169

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
           S+ N I T E GTHESG + ALTR + +YA       +   ++  DD+      I+SV I
Sbjct: 170 SFANNINTHEDGTHESGFKSALTRILNEYARKYNAIKESDANLSGDDVREGLTAIISVKI 229

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRR 433
            +P+F GQTKTKL + + +  VE+   +  + +L +NP  A K++E  V  +      R+
Sbjct: 230 PDPQFEGQTKTKLGNSEVRGIVESLFAEKLEEFLQENPAIAKKIVEKGVQAQRAREAARK 289

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            +    RK+A+    LPGKLADCS   A  +E++IVEGDSAGGSAKQ R+R  QA+LPLR
Sbjct: 290 ARELTQRKSALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLR 349

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           GKILNV  A  +KI +N +I  ++ ALG      +     RY K+IIMTDADVDG
Sbjct: 350 GKILNVEKARLDKILSNAEIRAIITALGTGIGEDFDISKARYHKIIIMTDADVDG 404


>gi|27544674|dbj|BAC55032.1| DNA gyrase B subunit [Legionella waltersii]
          Length = 293

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 107/304 (35%), Positives = 166/304 (54%), Gaps = 17/304 (5%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DN++DE +AG+   I V++  +  +TV D+GRGIPV+ H K   
Sbjct: 1   DTDDGTGLHHMVFEVVDNSIDEALAGHCKEIFVTIHADESITVKDDGRGIPVDIH-KEEG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           KS  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+ELH+ + R   +  Q +  
Sbjct: 60  KSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLLIRRHGKVHEQHYRH 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G+P +P+ +     N  GT++ F+P    F +   F    L K  +  +YL+  V     
Sbjct: 120 GVPDAPIAETG-TANSTGTQVWFKPSASTFTN-IEFHYDILAKRLRELSYLNSGVCIHLF 177

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
            ++          K+ F++ GG+K +++   +N++ +   +F    EK G     +E A+
Sbjct: 178 DERSQ-------RKDTFHYEGGIKAFVEHLNKNKTAVHPNVFAMTAEKDGI---VIELAL 227

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W +     I  + N I   +GGTH +G R ALTR +  Y E      K  +S   DD  
Sbjct: 228 QWNDTYQETIFCFTNNIPQKDGGTHMAGFRAALTRTLNNYIEHEGYAKKAKVSPTGDDSR 287

Query: 364 ISAV 367
               
Sbjct: 288 EGLT 291


>gi|148971423|gb|ABR20249.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 180/430 (41%), Positives = 257/430 (59%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFDN +Y+ISGGLHGVG+SVVNALS ELH+ +     ++ Q +  G P 
Sbjct: 1   EVIMTVLHAGGKFDNDSYKISGGLHGVGVSVVNALSQELHLVIRMNGKVYEQYYHMGNPA 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL +  +    RGT + F+P  ++F +   F+   L K  +  A+L+  +K   + ++ 
Sbjct: 61  APLAEVGQTTE-RGTEVRFKPSAEMFKN-IEFNYDTLAKRLRELAFLNTSIKIYLADER- 117

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   +K+ F + GGLK +++    N++ I S+IF    EK+   R TVE A+ W +
Sbjct: 118 ------TDKKDSFEYHGGLKGFVEDLNRNKTPIHSKIFYFSAEKE---RVTVEVAVQWND 168

Query: 311 ENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
              E    Y N I   +GGTH +G R ALTR    Y E      K  ++   DDL     
Sbjct: 169 TYQEKLFCYTNNIPQRDGGTHVAGFRSALTRVFNNYLEKEGYAKKEKVATSGDDLREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV +  P+F+ QTK KLVS + +  VE+ + + F  +L++NP +A  ++  VIE + 
Sbjct: 229 AVLSVKMPNPKFSAQTKDKLVSSEIKSIVESLMGERFQDFLMENPQDAKNIVGKVIEAAR 288

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK RE   RK+A+    LPGKLADC +     +ELFIVEGDSAGGSAKQAR+R +
Sbjct: 289 AREAARKARELTRRKSALDVAGLPGKLADCQEEDPGKSELFIVEGDSAGGSAKQARDRKS 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDAD 545
           QAVLPL+GKILNV  A  +K+ ++ ++  L+ ALGC    +    +  RY  +IIMTDAD
Sbjct: 349 QAVLPLKGKILNVEKARFDKMLSSAEVATLITALGCGIGREEYSPDKTRYHSIIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|190341296|gb|ACE74725.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 156/415 (37%), Positives = 233/415 (56%), Gaps = 15/415 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKF    Y++SGGLHGVG+SVVNALS +L V   R+  ++ Q++  G P   +++  
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSKKLEVQDKREGKVYQQEYRCGAPQYDIKEIG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +     GT++TF PD +IF +   +D   L    +  A+L+  ++   + ++        
Sbjct: 61  E-SEMTGTQVTFWPDEEIFTETTEYDFDTLQSRIRELAFLNKGIEIVLTDER-------T 112

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
              + F + GG+ ++++   +NR  +       + EK       VE A+ + +     I 
Sbjct: 113 DISQTFIYEGGIISFVEHLNQNREPVHQPPIYVEGEKDHIQ---VEVALQYNDSYTENIY 169

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
           S+ N I T EGGTHESG + ALTR + +YA       +   ++  DD+      I+SV I
Sbjct: 170 SFANNINTHEGGTHESGFKSALTRILNEYARKYNAIKESDANLSGDDVREGLTAIISVKI 229

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRR 433
            +P+F GQTKTKL + + +  VE+   +  + +L +NP  A K++E  V  +      R+
Sbjct: 230 PDPQFEGQTKTKLGNSEVRGIVESLFAEKLEEFLQENPAIAKKIVEKGVQAQRAREAARK 289

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            +    RK+A+    LPGKLADCS   A  +E++IVEGDSAGGSAKQ R+R  QA+LPLR
Sbjct: 290 ARELTRRKSALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLR 349

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           GKILNV  A  +KI +N +I  ++ ALG      +     RY K+IIMTDADVDG
Sbjct: 350 GKILNVEKARLDKILSNAEIRAIITALGTGIGEDFDISKARYHKIIIMTDADVDG 404


>gi|145642080|ref|ZP_01797651.1| DNA topoisomerase IV subunit B [Haemophilus influenzae R3021]
 gi|145273260|gb|EDK13135.1| DNA topoisomerase IV subunit B [Haemophilus influenzae 22.4-21]
          Length = 216

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 91/214 (42%), Positives = 130/214 (60%), Gaps = 3/214 (1%)

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           EGDSAGGSAKQAR+R  QA+LPLRGKILN      +++  + +I D+  ALG    S   
Sbjct: 2   EGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDIAVALGIDPDSNDL 61

Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV 589
              LRY KV I+ DAD DG HIA+LL   F +    L++  H+++  PPL+RI    +  
Sbjct: 62  -SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMPPLYRIDLNKEVF 120

Query: 590 YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDL 649
           YA DE  K+ IL+   K+ KGK  + RFKGLGEM  SQL+ET MD N R L+++  +   
Sbjct: 121 YALDENEKEAILDRL-KNKKGKPNVQRFKGLGEMNPSQLRETTMDPNTRRLVQLTYDLGE 179

Query: 650 NSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682
           +   DT + ++ L+  K +++R  ++Q +   +D
Sbjct: 180 DQGSDTLELMDMLLAKKRSEDRKNWLQAKGDQVD 213


>gi|295979441|dbj|BAJ07393.1| DNA gyrase subunit B [Rhodoplanes elegans]
          Length = 306

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 111/316 (35%), Positives = 169/316 (53%), Gaps = 14/316 (4%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DNA+DE +AGYA  + V+L+ +G +TV D+GRGIP   H K   
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGYAREVSVTLNPDGSVTVRDDGRGIPTAIH-KGEG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALS  L + + R       +F  
Sbjct: 60  VSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSWLKLRIWRDGHEHFMEFRH 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  ++PL        +RGT +TF    + F     +D   L    +  A+L+  V+   +
Sbjct: 120 GEAVAPLAVVGDAGGQRGTEVTFLASTETF-TMTEYDWGTLEHRLRELAFLNSGVRIVLT 178

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   EK      EE ++ GG++ +++    N+  +  +    K+ + G     VE A+
Sbjct: 179 DKRHAVEKR-----EEMHYEGGVEAFVRFIDRNKKPLVVDPIVIKSARDGI---EVECAL 230

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W +     +  + N I   +GGTH +G R ALTR I  YAE      K  +++  DD  
Sbjct: 231 WWNDGYHETVLCFTNNIPQRDGGTHLAGFRGALTRQITGYAESGGVSKKEKVALTGDDCR 290

Query: 364 ISAVGILSVFIREPEF 379
                +LSV + +P+F
Sbjct: 291 EGLTAVLSVKVPDPKF 306


>gi|253826376|gb|ACT36491.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 157/415 (37%), Positives = 234/415 (56%), Gaps = 15/415 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKF    Y++SGGLHGVG+SVVNALS +L V V R+  ++ Q++  G P   +++  
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSKKLEVQVKREGKVYQQEYRCGAPQYDIKEIG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +     GT++TF PD +IF +   +D   L    +  A+L+  ++   + ++        
Sbjct: 61  E-SEMTGTQVTFWPDEEIFTETTEYDFDTLQSRIRELAFLNKGIEIVLTDER-------T 112

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
              + F + GG+ ++++   +NR  +       + EK       VE A+ + +     I 
Sbjct: 113 DISQTFIYEGGIISFVEHLNQNREPVHQPPIYAEGEKDHIQ---VEVALQYNDSYTENIY 169

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
           S+ N I T EGGTHESG + ALTR + +YA       +   ++  DD+      I+SV I
Sbjct: 170 SFANNINTHEGGTHESGFKSALTRILNEYARKYNAIKESDANLSGDDVREGLTAIISVKI 229

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRR 433
            +P+F GQTKTKL + + +  VE+   +  + +L +NP  A K++E  V  +      R+
Sbjct: 230 PDPQFEGQTKTKLGNSEIRGIVESLFAEKLEEFLQENPAIAKKIVEKGVQAQRAREAARK 289

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            +    RK+A+    LPGKLADCS   A  +E++IVEGDSAGGSAKQ R+R  QA+LPLR
Sbjct: 290 ARELTRRKSALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLR 349

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           GKILNV  A  +KI +N +I  ++ ALG      +     RY K+IIMTDADVDG
Sbjct: 350 GKILNVEKARLDKILSNAEIRAIITALGTGIGEDFDISKARYHKIIIMTDADVDG 404


>gi|119369896|gb|ABL67962.1| DNA gyrase subunit B [Acidithiobacillus ferrooxidans]
 gi|119369898|gb|ABL67963.1| DNA gyrase subunit B [Acidithiobacillus ferrooxidans]
 gi|209863977|gb|ACI88906.1| GyrB [Acidithiobacillus ferrooxidans]
 gi|209863979|gb|ACI88907.1| GyrB [Acidithiobacillus ferrooxidans]
          Length = 418

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 160/430 (37%), Positives = 251/430 (58%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD++ Y++SGGLHGVG+SVVNALS+ L + + R   +++Q++  G P 
Sbjct: 1   EVIMTVLHAGGKFDDNAYKVSGGLHGVGVSVVNALSETLQLRIFRDGYVWTQEYHDGEPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+ +      K G+ I F+P P++F D   F    + K  +  A+L+  V      ++ 
Sbjct: 61  APIAR-GDASRKHGSTIRFKPSPQVFADTH-FHFEIIAKRLRELAFLNSGVHITLLDERA 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       E F++ GG++ +++    +++ I   + T   E+ G     VE A+ W E
Sbjct: 119 SRE-------ETFHYEGGIRAFVEHLNRSKTAIHPSVITLTGERDGI---VVEAALQWNE 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR + +Y E      K  +++  +D      
Sbjct: 169 GYNEAVLCFTNNIPQADGGTHLAGFRGALTRTLNQYMEREGIIAKAKVAVSGEDAREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE+++ +    +L ++P EA  +   ++E + 
Sbjct: 229 AVLSVKVPDPKFSSQTKEKLVSSEVKPIVESSMSEALTMFLDEHPKEAQAIAAKIVEAAR 288

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   R+ RE   RK A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R +
Sbjct: 289 AREAARRARELTRRKGALDIANLPGKLADCQEKDPAQCEIYLVEGDSAGGSAKQGRDRRH 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +++ ++ +I  L+ ALG    +   +   LRY +VIIMTDAD
Sbjct: 349 QAILPLKGKILNVERARFDRMLSSDEIGTLITALGTGIGAGDFDVAKLRYHRVIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|148971433|gb|ABR20254.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 421

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 164/430 (38%), Positives = 251/430 (58%), Gaps = 14/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD   Y++SGGLHGVG SVVNALS+   V V R   +++ +F RG+  
Sbjct: 1   EVIMTVLHAGGKFDGGGYKVSGGLHGVGASVVNALSECTEVEVCRDGKVYAMEFERGVKT 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           S L+   K R K GT++TF+PD +IF D   FD  R++   +  AYL+  +      ++ 
Sbjct: 61  SELKTIGK-RQKTGTKVTFKPDAQIFPDIT-FDYDRVVVRCRELAYLNEGLAFYIEDER- 117

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG-THRGTVEWAIAWC 309
                   +K+EF +  G+  +++   E + +I +++   + E+ G  +  +V+ A+ + 
Sbjct: 118 ------TGKKDEFKYTRGIIQFVKQLNEGKEVIHNQVIYLEREEPGKDNPMSVQVAMQYN 171

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISA 366
           +     + S+ N I T  GGTH SG   ALTR +  YA+     +        DDL    
Sbjct: 172 DGYAESLHSFANNINTPGGGTHLSGFETALTRTLNFYAKSNNLIKDEKEMPNGDDLREGL 231

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             I+S+ +  P+F GQTK KL + + +  V NA+ +    +L ++P +A ++++  +   
Sbjct: 232 SAIVSIKVPNPQFEGQTKDKLGNGEVEGFVANAVNETLGTWLEEHPADAKRIIQKGLLAR 291

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
           + R   RK RE+ RK A+    LPGKLADCS      TEL+IVEG SAGG+AK  R+R  
Sbjct: 292 QAREAARKARELTRKGALSSGGLPGKLADCSSRDMESTELYIVEGRSAGGTAKAGRDRVF 351

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDAD 545
           QA+LP++GKILNV  A  +K+ ++++I  +VQAL C   +   +   LR  K++IMTDAD
Sbjct: 352 QAILPIKGKILNVEKARVDKMLSHEEIRTIVQALACGLGASDMDLSKLRCGKLVIMTDAD 411

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 412 VDGSHIRTLL 421


>gi|148616452|gb|ABQ96969.1| GyrB [Nocardiopsis gilva]
          Length = 424

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 150/430 (34%), Positives = 233/430 (54%), Gaps = 10/430 (2%)

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
           +E+I+T LHAGGKF+   Y +SGGLHGVG+SVVNALS  L   +  +   ++Q +  G P
Sbjct: 1   IEVIMTVLHAGGKFEGGGYAVSGGLHGVGLSVVNALSTRLSAEIWTEGHRWTQDYRDGAP 60

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            + L K E      GT+ITF  D  IF     ++   L +  Q  A+L+  +      ++
Sbjct: 61  TADLSKDEPTEE-TGTQITFWADGSIFETTT-YNFETLARRMQETAFLNKGLSITIRDER 118

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
                   P    +++  GL  +++     +    + I + + E  G    +VE A+ W 
Sbjct: 119 -PEFTGDAPVVHTYHYENGLADFVRHINAAKDPAHASIISFEEEGDGI---SVEIAMQWN 174

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISA 366
           +     + ++ NTI T EGGTHE G R ALT  + +YA   +   ++  ++  DD+    
Sbjct: 175 QSYTSSVHTFANTINTAEGGTHEEGFRTALTSIVNRYARDQRLVREKEDNLTGDDIREGL 234

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIER 425
             I+SV + +P+F GQTKTKL + +A+  V+    +    +  +NP EA  ++ +     
Sbjct: 235 TAIISVKLADPQFEGQTKTKLGNTEAKSFVQRVTNEHLRDWFERNPGEAKDVVTKATQAA 294

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
                 R+ +    RKT +    LPGKL+DC       +E++IVEGDSAGGSAK  R+  
Sbjct: 295 RARIAARQARDLTRRKTLLESTSLPGKLSDCQSTEPEKSEVYIVEGDSAGGSAKGGRDPH 354

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545
            QA+LP+RGKILNV  +  ++I  N ++  ++ A+G     ++  E LRY K+I+MTDAD
Sbjct: 355 YQAILPIRGKILNVEKSRIDRILKNNEVQAIITAMGTGVHEEFDIEKLRYHKIILMTDAD 414

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 415 VDGSHIRTLL 424


>gi|119369986|gb|ABL68007.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 157/430 (36%), Positives = 250/430 (58%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD++ Y++SGGLHGVG+SVVNALS+ L + + R   +++Q++  G P 
Sbjct: 1   EVIMTVLHAGGKFDDNAYKVSGGLHGVGVSVVNALSETLQLRIFRDGYVWTQEYHDGEPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+ +  +   K G+ I F+P P++F D   F    + K  +  A+L+  V      ++ 
Sbjct: 61  APVAR-GEASRKHGSTIRFKPSPQVFADTH-FHFEIIAKRLRELAFLNSGVHITLLDERG 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       E F++ GG++ +++    +++ I   + T   E+ G     VE A+ W E
Sbjct: 119 GRE-------EVFHYEGGIRAFVEHLNRSKTAIHPTVITLSGERDGI---VVEAALQWNE 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR + +Y E      K  + +  +D      
Sbjct: 169 GYSEAVLCFTNNIPQTDGGTHLAGFRGALTRTLNQYMEREGIITKAKVVVSGEDTREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE+++ +    +L ++P EA  +   ++E + 
Sbjct: 229 AVLSVKVPDPKFSSQTKEKLVSSEVKPIVESSMSEALTIFLDEHPKEAQAIAAKIVEAAR 288

Query: 428 ERLRRRKQREVNRKT-AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   R+ RE+  +  A+    LPGKLADC +      E+++VEGDSAGGSAK+ R+R +
Sbjct: 289 AREAARRARELTHRKGALDIANLPGKLADCQEKDPAKCEIYLVEGDSAGGSAKKGRDRRH 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++ +   L+ ALG    +   +   LRY +VIIMTDAD
Sbjct: 349 QAILPLKGKILNVERARFDKMLSSDETGTLITALGTGIGAGDFDVAKLRYHRVIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|56409826|emb|CAH65722.1| DNA gyrase [Vibrio aestuarianus]
          Length = 421

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 164/430 (38%), Positives = 249/430 (57%), Gaps = 14/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LH GGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R+  IF Q +  G+P 
Sbjct: 1   EVIMTVLHGGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIKRKGEIFQQIYHHGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    K     GTRI F P  + F +   F    L K  +  ++L+  V    + ++E
Sbjct: 61  APLAVIGKTEE-TGTRIRFWPSEETFTN-IEFHYEILAKRLRELSFLNSGVSIKLTDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + + F F GG++ +++    N++ I  +IF     ++     TVE A+ W +
Sbjct: 119 ------EDKSDHFMFEGGIRAFVEHLNRNKTPIHQKIFYFDHTRE-EDGITVEVAMQWND 171

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR +  + +      K   +   DD      
Sbjct: 172 GFQEGVYCFPNNIPQRDGGTHLAGFRGALTRPLNNFMDKEGYSKKAQAATSGDDAREGLT 231

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +L++NP EA  +   +I+   
Sbjct: 232 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMSEKLSEFLIENPTEAKIVCGKIIDAAR 291

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ R R N
Sbjct: 292 AREAARKARXMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRXRKN 351

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDAD
Sbjct: 352 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDAD 411

Query: 546 VDGAHIASLL 555
           V G+HI +LL
Sbjct: 412 VXGSHIRTLL 421


>gi|253826372|gb|ACT36489.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 155/415 (37%), Positives = 233/415 (56%), Gaps = 15/415 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKF    Y++SGGLHGVG+SVVNALS +L V V R+  ++ Q++  G P   +++  
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSKKLEVQVEREGKVYQQEYRCGAPQYDIKEIG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +     GT++TF PD +IF +   +D   L    +  A+L+  ++   + ++        
Sbjct: 61  E-SEMTGTQVTFWPDEEIFTETTEYDFDTLQSRIRELAFLNKGIEIVLTDER-------T 112

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
              + F + GG+ ++++   +NR  +       + EK       VE A+ + +     I 
Sbjct: 113 DISQTFIYEGGIISFVEHLNQNREPLHQPPIYVEGEKDHIQ---VEVALQYNDGYTENIY 169

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
           S+ N I T EGGTHESG + ALTR + +YA       +   ++  D +      I+SV I
Sbjct: 170 SFANNINTHEGGTHESGFKSALTRILNEYARKYNAIKESDANLSGDGVREGLTAIISVKI 229

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRR 433
            +P+F GQTKTKL + + +  VE+   +  + +L +NP  A K++E  V  +      R+
Sbjct: 230 PDPQFEGQTKTKLGNSEVRGIVESLFAEKLEEFLQENPAIAKKIVEKGVQAQRAREAARK 289

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            +    RK+A+    LPGKLADCS   A  +E++IVEGDSAGGSAKQ R+R  QA+LPLR
Sbjct: 290 ARELTRRKSALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLR 349

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           GKILNV  A  +KI +N +I  ++ ALG      +     RY K++IMTDADVDG
Sbjct: 350 GKILNVEKARLDKILSNAEIRAIITALGTGIGEDFDISKARYHKIVIMTDADVDG 404


>gi|19979617|dbj|BAB88764.1| subunit B protein of DNA gyrase [Bradyrhizobium elkanii]
 gi|19979621|dbj|BAB88766.1| subunit B protein of DNA gyrase [Bradyrhizobium elkanii]
          Length = 303

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 114/313 (36%), Positives = 174/313 (55%), Gaps = 12/313 (3%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DNA+DE +AG+A+ + V+L+ +  +TV D+GRGIPV  H K   
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHASRVLVTLNADNSVTVYDDGRGIPVGIH-KEEG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALS +L + + R +     +F+ 
Sbjct: 60  VSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLALRIWRDDKEHYIEFAH 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  ++PL+   +   KRGT +TF    + F +   +D A L    +  A+L+  V    S
Sbjct: 120 GDAVAPLKVVGEAPGKRGTEVTFLASVETFKN-IEYDFATLEHRLRELAFLNSGVNIVLS 178

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   EK      EE ++ GG++ +++    N+  I       ++E  G     VE A+
Sbjct: 179 DMRHAVEKR-----EEMHYSGGVEEFVKYLDRNKKAIVPAPIMVRSEANGI---GVEAAL 230

Query: 307 AWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
            W +   E    + N I   +GGTH +G R ALTR +  YAE    K  I++  DD    
Sbjct: 231 WWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQVNGYAEANAKKEKIALTGDDCREG 290

Query: 366 AVGILSVFIREPE 378
              +LSV + +P+
Sbjct: 291 LTAVLSVKVPDPK 303


>gi|224983399|pdb|2ZJT|A Chain A, Crystal Structure Of Dna Gyrase B' Domain Sheds Lights On
           The Mechanism For T-Segment Navigation
 gi|224983400|pdb|2ZJT|B Chain B, Crystal Structure Of Dna Gyrase B' Domain Sheds Lights On
           The Mechanism For T-Segment Navigation
          Length = 247

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 90/238 (37%), Positives = 133/238 (55%), Gaps = 10/238 (4%)

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           +   +      +EL++VEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N +
Sbjct: 1   MTPYAFTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTE 60

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           +  ++ ALG     ++    LRY K+++M DADVDG HI++LLLT  ++ M  LIE  H+
Sbjct: 61  VQAIITALGTGIHDEFDIGKLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLIENGHV 120

Query: 573 FLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIE----ISRFKGLGEMLASQ 627
           FL  PPL+++        +A+ +  +  +LE   K GK KI     I R+KGLGEM A +
Sbjct: 121 FLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGK-KINKEDGIQRYKGLGEMDAKE 179

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           L ET MD + R L +V ++          +  + LMG   D R  FI   A  +  + 
Sbjct: 180 LWETTMDPSVRVLRQVTLDD----AAAADELFSILMGEDVDARRSFITRNAKDVRFLD 233


>gi|2196838|gb|AAB80836.1| DNA gyrase beta-subunit [Shewanella hanedai]
          Length = 419

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 162/430 (37%), Positives = 246/430 (57%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L +TV R   ++ Q ++ G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSSKLQLTVRRDGKLYEQFYTHGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            P++      N  GT + F P    F D   F    L K  +  ++L+  V      +++
Sbjct: 61  EPIKAIGDSTN-TGTELRFWPSTDTFTDVL-FHFDILAKRVRELSFLNSGVGIRLVDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             +       E F + GG+  ++     N++ ++ E+F    E+      TVE A+ W +
Sbjct: 119 NKD-------EFFKYEGGISAFVDYLNVNKTPVNKEVFHFIQERDD--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R ALTR +  Y E      K   S   DD      
Sbjct: 170 GFQENIFCFTNNIPQRDGGTHLAGFRGALTRNLNNYMEKEGYNKKGKTSATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +    YL+++P EA  ++  +I+   
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEQLGDYLIEHPNEAKLIVGKIIDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARKAREMTRRKGALDLGGLPGKLADCQEKDPAHSEIYIVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q+++ L+ ALGC   R +Y  +  RY  ++I++DAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVVTLITALGCGIGRDEYDPDKTRYHNIVIISDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHIRTLL 419


>gi|18916417|dbj|BAB85503.1| DNA gyrase subunit B [Bradyrhizobium elkanii USDA 76]
 gi|18916438|dbj|BAB85510.1| DNA gyrase subunit B [Bradyrhizobium elkanii]
 gi|19979619|dbj|BAB88765.1| subunit B protein of DNA gyrase [Bradyrhizobium elkanii]
          Length = 303

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 114/313 (36%), Positives = 173/313 (55%), Gaps = 12/313 (3%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DNA+DE +AG+A+ + V+L+ +  +TV D+GRGIPV  H K   
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHASRVLVTLNADNSVTVYDDGRGIPVGIH-KEEG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALS +L + + R +     +F+ 
Sbjct: 60  VSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLALRIWRDDKEHYIEFAH 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  ++PL+       KRGT +TF    + F +   +D A L    +  A+L+  V    S
Sbjct: 120 GDAVAPLKVVGDAPGKRGTEVTFLASVETFKN-IEYDFATLEHRLRELAFLNSGVNIVLS 178

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   EK      EE ++ GG++ +++    N+  I       ++E  G     VE A+
Sbjct: 179 DMRHAVEKR-----EEMHYSGGVEEFVKYLDRNKKAIVPAPIMVRSEANGI---GVEAAL 230

Query: 307 AWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
            W +   E    + N I   +GGTH +G R ALTR +  YAE    K  I++  DD    
Sbjct: 231 WWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQVNGYAEANAKKEKIALTGDDCREG 290

Query: 366 AVGILSVFIREPE 378
              +LSV + +P+
Sbjct: 291 LTAVLSVKVPDPK 303


>gi|209863981|gb|ACI88908.1| GyrB [Acidithiobacillus ferrooxidans]
          Length = 418

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 160/430 (37%), Positives = 251/430 (58%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD++ Y++SGGLHGVG+SVVNALS+ L + + R   +++Q++  G P 
Sbjct: 1   EVIMTVLHAGGKFDDNAYKVSGGLHGVGVSVVNALSETLQLRIFRDGCVWTQEYHDGEPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+ +      K G+ I F+P P++F D   F    + K  +  A+L+  V      ++ 
Sbjct: 61  APIAR-GDASRKHGSTIRFKPSPQVFADTH-FHFEIIAKRLRELAFLNSGVHITLLDERA 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       E F++ GG++ +++    +++ I   + T   E+ G     VE A+ W E
Sbjct: 119 SRE-------ETFHYEGGIRAFVEHLNRSKTAIHPSVITLTGERDGI---VVEAALQWNE 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR + +Y E      K  +++  +D      
Sbjct: 169 GYNEAVLCFTNNIPQADGGTHLAGFRGALTRTLNQYMEREGIIAKAKVAVSGEDAREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE+++ +    +L ++P EA  +   ++E + 
Sbjct: 229 AVLSVKVPDPKFSSQTKEKLVSSEVKPIVESSMSEALTMFLDEHPKEAQAIAAKIVEAAR 288

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   R+ RE   RK A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R +
Sbjct: 289 AREAARRARELTRRKGALDIANLPGKLADCQEKDPAQCEIYLVEGDSAGGSAKQGRDRRH 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +++ ++ +I  L+ ALG    +   +   LRY +VIIMTDAD
Sbjct: 349 QAILPLKGKILNVERARFDRMLSSDEIGTLITALGTGIGAGDFDVAKLRYHRVIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|18916435|dbj|BAB85509.1| DNA gyrase subunit B [Bradyrhizobium liaoningense]
          Length = 303

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 114/313 (36%), Positives = 172/313 (54%), Gaps = 12/313 (3%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DNA+DE +AG+A  +EV L+ +  +TV D+GRGIPV+ H K   
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHATRVEVILNSDNSVTVRDDGRGIPVDIH-KGEG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALS +L + + R N     +F+ 
Sbjct: 60  ISAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAH 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  ++PL+       +RGT +TF    + F +   +D A L    +  A+L+  V    S
Sbjct: 120 GDAVAPLKVVGDAPGRRGTEVTFLASTETFKN-IEYDFATLEHRLRELAFLNSGVNIVLS 178

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   EK      EE ++ GG++ +++    N+  I       ++   G     VE A+
Sbjct: 179 DMRHAVEKR-----EEMHYSGGVEEFVKYLDRNKKAIVPAPIMVRSAANGI---GVEAAL 230

Query: 307 AWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
            W +   E    + N I   +GGTH +G R ALTR +  YAE    K  I++  DD    
Sbjct: 231 WWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQVNGYAEANAKKEKIALTGDDCREG 290

Query: 366 AVGILSVFIREPE 378
              +LSV + +P+
Sbjct: 291 LTAVLSVKVPDPK 303


>gi|119369904|gb|ABL67966.1| DNA gyrase subunit B [Acidithiobacillus ferrooxidans]
          Length = 420

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 155/430 (36%), Positives = 241/430 (56%), Gaps = 15/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD ++Y++SGGLHGVGISVVNALS +L +++ R+   + Q+++ G P+
Sbjct: 1   EVIMTVLHAGGKFDENSYKVSGGLHGVGISVVNALSKKLTLSIKREGQRWEQEYATGDPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+      R   GT I F PDP++F     F  +RL    +  A+L+  +K     ++E
Sbjct: 61  APIAPTGNCRG-TGTTIIFWPDPEVFES-TEFSFSRLQNRFKELAFLNDNLKITLKDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             ++        +++ GG+  ++    + R  I   I   + E+ G     V+ AI W +
Sbjct: 119 GRKREAT-----YHYEGGVAAFVADINKGREAIHPTIIRVRGERDGI---VVDAAIQWND 170

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +G TH +G R A+TR +  Y +      K  I+  S D+     
Sbjct: 171 GYAESVYPFTNNIPQADGDTHLTGFRSAMTRAMSAYLDREGIAAKNKITADSSDMREGLA 230

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERS 426
            ILSV + +P+F+ QTK KLVS + +  VE  + +    +L ++P EA  +   ++    
Sbjct: 231 AILSVKVPDPKFSSQTKDKLVSSEVRPVVEGIIAEALTTFLDEHPKEAQAIAAKIVEAAR 290

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK+A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R  
Sbjct: 291 AREAARKARETTRRKSAMDIANLPGKLADCQEKDPSLCEIYLVEGDSAGGSAKQGRDRKF 350

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  ++I  +++I  ++ ALG            LRY ++I+MTDAD
Sbjct: 351 QAILPLKGKILNVERARFDRILESEEIGTMITALGTGIGPDEFNAAKLRYHRIILMTDAD 410

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 411 VDGSHIRTLL 420


>gi|313611852|gb|EFR86318.1| DNA gyrase subunit B [Listeria monocytogenes FSL F2-208]
          Length = 173

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 64/178 (35%), Positives = 99/178 (55%), Gaps = 6/178 (3%)

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ M  L+
Sbjct: 1   LANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLL 60

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+KGLGEM   Q
Sbjct: 61  DAGYIYIAQPPLYQIKHGKQVEYVYSDGQLEDYLASL--DGDTKYSIQRYKGLGEMNPEQ 118

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           L +T M+   RTLL+V I   +    D  ++   LMG + + R KFI++ A ++ ++ 
Sbjct: 119 LWDTTMNPEHRTLLQVNIKDAI----DADETFEMLMGDRVEPRRKFIEDNAQYVKNLD 172


>gi|301060277|ref|ZP_07201143.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
 gi|300445620|gb|EFK09519.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
          Length = 218

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 96/218 (44%), Positives = 133/218 (61%), Gaps = 3/218 (1%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +    Y AS I++LEGL  VR RP MYIG T  + LHHL  EV+DN++DE +AGY + I+
Sbjct: 2   TQEQTYAASDIKVLEGLSAVRKRPSMYIGNTSFEGLHHLVYEVVDNSIDEALAGYCDQID 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           + L  +  + + DNGRGIPV+ H    N   LE+++T LHAGGKFDN TY +SGGLHGVG
Sbjct: 62  IKLMTDNSVVIRDNGRGIPVDMHASA-NMPALEVVMTKLHAGGKFDNKTYRVSGGLHGVG 120

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS  L V V R+   + Q++ RG   +PLE + +     GT+I F PDP IF  
Sbjct: 121 VSVVNALSSHLEVEVYREKKTYYQRYERGESKTPLEIRGETAR-TGTKIHFSPDPLIFET 179

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
              FD   L K  +  ++L+  ++     ++   +K  
Sbjct: 180 II-FDFETLAKRMRELSFLTKGLRIKILDERTGKKKTF 216


>gi|4589345|gb|AAD26459.1|AF136387_1 gyrase B subunit [Bacillus cereus]
          Length = 407

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 159/416 (38%), Positives = 234/416 (56%), Gaps = 14/416 (3%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD   Y++SGGLHGVG SVVNALS EL V V R   I  QK+ RGIP++ L+      +K
Sbjct: 2   FDGGGYKVSGGLHGVGASVVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DK 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT   F+PDP+IF +   ++   L    +  A+L+  +K      +E  +K      +E
Sbjct: 61  TGTITRFKPDPEIFKETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KE 114

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNT 321
           F++ GG+K+Y++    ++  I  E    +  K G     VE A+ + E       S+ N 
Sbjct: 115 FHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNN 171

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEF 379
           I T EGGTHE G + ALTR I  Y       +    ++  +D+      I+S+    P+F
Sbjct: 172 IHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQF 231

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREV 438
            GQTKTKL + +A+   E+   + F+ +L++NP  A K+++   +        ++ +   
Sbjct: 232 EGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELT 291

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK+A+    LPGKLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+N
Sbjct: 292 RRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIIN 351

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           V  A  +KI +N ++  ++ A+G      +  E  RY KVIIMTDADVDG+HI +L
Sbjct: 352 VEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGSHIRTL 407


>gi|18916420|dbj|BAB85504.1| DNA gyrase subunit B [Bradyrhizobium elkanii USDA 94]
          Length = 303

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 113/313 (36%), Positives = 173/313 (55%), Gaps = 12/313 (3%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DNA+DE +AG+A+ + V+L+ +  +TV D+GRGIPV  H K   
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHASRVLVTLNADNSVTVYDDGRGIPVGIH-KEEG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALS +L + + R +     +F+ 
Sbjct: 60  VSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLALRIWRDDKEHYIEFAH 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  ++PL+       KRGT +TF    + F +   +D A L    +  A+L+  V    S
Sbjct: 120 GDAVAPLKVVGDAPGKRGTEVTFLASTETFKN-IEYDFATLEHRLRELAFLNSGVHIVLS 178

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   EK      EE ++ GG++ +++    N+  I       ++E  G     VE A+
Sbjct: 179 DMRHAVEKR-----EEMHYSGGVEEFVKYLDRNKKAIVPAPIMVRSEANGI---GVEAAL 230

Query: 307 AWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
            W +   E    + N I   +GGTH +G R ALTR +  YA+    K  I++  DD    
Sbjct: 231 WWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQVNGYADANAKKEKIALTGDDCREG 290

Query: 366 AVGILSVFIREPE 378
              +LSV + +P+
Sbjct: 291 LTAVLSVKVPDPK 303


>gi|84310476|gb|ABC55386.1| DNA gyrase subunit B [Bacillus amyloliquefaciens]
          Length = 409

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 168/418 (40%), Positives = 237/418 (56%), Gaps = 13/418 (3%)

Query: 136 TLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK 195
            LHAGGKFD S Y++SGGLHGVG SVVNALS  L VTV R   I  Q + RG+P++ LE 
Sbjct: 1   VLHAGGKFDGSGYKVSGGLHGVGASVVNALSTTLDVTVHRDGKIHYQAYERGVPVADLEV 60

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
                +K GT   F PDP+IF +   +D   L    +  A+L+  V       +E  E+ 
Sbjct: 61  IGDT-DKTGTITHFVPDPEIFKETTVYDYDLLSNRVRELAFLTKGVNITIEDKREGQERK 119

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PE 314
                  +++ GG+K+Y++    ++ +I  E    + EK G    TVE A+ + +     
Sbjct: 120 NE-----YHYEGGIKSYVEYLNRSKEVIHEEPIYIEGEKDGI---TVEVALQYNDSYTSN 171

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSV 372
           I S+ N I T EGGTHE+G +  LTR I  YA       +   ++  DD+      I+S+
Sbjct: 172 IYSFTNNINTYEGGTHEAGFKTGLTRVINDYARRKGIFKENDPNLSGDDVREGLTAIISI 231

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
              +P+F GQTKTKL + +A+   +       + +L++NP  A K++E  +  +  R+  
Sbjct: 232 KHPDPQFEGQTKTKLGNSEARTITDTLFSSALETFLLENPDSARKIVEKGLMAARARMAA 291

Query: 433 RKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           +K      RK+A+    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP
Sbjct: 292 KKARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILP 351

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549
           LRGKILNV  A  +KI +N ++  ++ ALG      +  E  RY KV+IMTDADVDG+
Sbjct: 352 LRGKILNVEKARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVVIMTDADVDGS 409


>gi|148971331|gb|ABR20203.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 162/430 (37%), Positives = 246/430 (57%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+ +Y++SGGLHGVG+SVVNALS+ LH+ + R+  +  Q++  G   
Sbjct: 1   EVIMTVLHAGGKFDDDSYKVSGGLHGVGVSVVNALSEHLHLLIKREGKLHEQEYRNGDAA 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            PL+     +   GT I F+P  K+F     F+   L +  +  ++L+  V+      ++
Sbjct: 61  YPLKVVADAQG-TGTEIRFKPSAKVF-THIQFNYDILARRLRELSFLNSGVRILLHDQRD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + + F + GG+K +++    N++ +   +F    E +   R TVE A+ W +
Sbjct: 119 -------DKHDVFQYQGGIKAFVEHLNRNKTALHETVFHFIAEHE---RTTVEIALQWND 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR I  Y E      K  I +  DD      
Sbjct: 169 SYQETVYCFTNNIPQRDGGTHLAGFRAALTRTINNYIEAEGLLKKEKIPMTGDDAREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERS 426
           GI+SV + +P+F+ QTK KLVS + +  VE+ +   F+ +L++ P E+  ++  VI    
Sbjct: 229 GIVSVKLPDPKFSSQTKDKLVSSEVKGVVESLMAGKFEEFLLEKPAESKIIVGKVIEAAR 288

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +ELF+VEGDSAGGSAKQ R+R  
Sbjct: 289 AREAARKAREMTRRKGALDVAGLPGKLADCQERDPALSELFLVEGDSAGGSAKQGRDRKC 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY-REEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++ ++  L+ ALGC    +    + LRY ++IIMTDAD
Sbjct: 349 QAILPLKGKILNVEKARIDKMLSSVEVGTLITALGCGIGKEELNIDKLRYHRIIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|115395366|gb|ABH11165.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395368|gb|ABH11166.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395370|gb|ABH11167.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395372|gb|ABH11168.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395374|gb|ABH11169.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395376|gb|ABH11170.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395378|gb|ABH11171.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395380|gb|ABH11172.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395382|gb|ABH11173.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395384|gb|ABH11174.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395386|gb|ABH11175.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395388|gb|ABH11176.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395390|gb|ABH11177.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395392|gb|ABH11178.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395394|gb|ABH11179.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395396|gb|ABH11180.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395398|gb|ABH11181.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395400|gb|ABH11182.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395402|gb|ABH11183.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395404|gb|ABH11184.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395446|gb|ABH11205.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395448|gb|ABH11206.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395450|gb|ABH11207.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395452|gb|ABH11208.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395454|gb|ABH11209.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395456|gb|ABH11210.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395458|gb|ABH11211.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395460|gb|ABH11212.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395462|gb|ABH11213.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395464|gb|ABH11214.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395466|gb|ABH11215.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395468|gb|ABH11216.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395470|gb|ABH11217.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395472|gb|ABH11218.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395474|gb|ABH11219.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395476|gb|ABH11220.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395478|gb|ABH11221.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395480|gb|ABH11222.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395482|gb|ABH11223.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395484|gb|ABH11224.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395486|gb|ABH11225.1| DNA gyrase B [Listeria monocytogenes]
 gi|115395488|gb|ABH11226.1| DNA gyrase B [Listeria monocytogenes]
          Length = 219

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 94/207 (45%), Positives = 128/207 (61%), Gaps = 2/207 (0%)

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 14  RKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILN 73

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 74  VEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTL 133

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+K
Sbjct: 134 FYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYK 191

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEI 645
           GLGEM   QL +T M+   RTLL+V I
Sbjct: 192 GLGEMNPEQLWDTTMNPEHRTLLQVNI 218


>gi|148971399|gb|ABR20237.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 420

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 155/430 (36%), Positives = 245/430 (56%), Gaps = 15/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALS +L + + R+  ++ Q++  G P+
Sbjct: 1   EVIMTVLHAGGKFDENSYKVSGGLHGVGVSVVNALSTKLTLAIRREGELWEQEYHCGDPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+  K   +   GT + F PDP++F     F  ARL K  +  AYL+  +    + ++ 
Sbjct: 61  APIAAKGPAKG-TGTTVHFWPDPEVFES-TEFSFARLEKRFRELAYLNDGLTILLNDERG 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             ++ G+     +++ GG+  ++Q   ++R  +   +   K ++ G     V+ AI W +
Sbjct: 119 DRKREGV-----YHYEGGVAAFVQDINKSREAVHPTVIRIKGDRDGVM---VDTAIQWND 170

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R A+TR +  Y E      K  ++I + D+     
Sbjct: 171 GYNESVFPFTNNIPQADGGTHLTGFRSAMTRVLGGYMEREGIATKAKVTIDAADMREGMT 230

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERS 426
            +LSV + +P+F+ QTK KLVS + +  VE+ + +    +L + P EA  +   ++    
Sbjct: 231 AVLSVKVPDPKFSSQTKDKLVSSEVRPIVESVIAEGVGTFLDEKPKEAQAICAKIVEAAK 290

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R  
Sbjct: 291 AREAARKARDITRRKGALDIANLPGKLADCQEKDPALCEIYLVEGDSAGGSAKQGRDRKF 350

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +++  + +I  L+ ALG            LRY ++IIMTDAD
Sbjct: 351 QAILPLKGKILNVERARFDRMLESDEIGTLITALGTGIGQDEFNAGKLRYHRIIIMTDAD 410

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 411 VDGSHIRTLL 420


>gi|19979613|dbj|BAB88762.1| subunit B protein of DNA gyrase [Bradyrhizobium japonicum]
 gi|19979615|dbj|BAB88763.1| subunit B protein of DNA gyrase [Bradyrhizobium japonicum]
          Length = 303

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 113/313 (36%), Positives = 173/313 (55%), Gaps = 12/313 (3%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DNA+DE +AG+A+ ++V L+ +  +TV D+GRGIPV+ H K   
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHASRVDVILNADNSVTVRDDGRGIPVDIH-KGEG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALS +L + + R +     +F+ 
Sbjct: 60  ISAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAH 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  ++PL        KRGT +TF    + F +   +D A L    +  A+L+  V    S
Sbjct: 120 GDAVAPLVVVGDAPGKRGTEVTFLASTETFKN-IEYDFATLEHRLRELAFLNSGVNIALS 178

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   EK      EE ++ GG++ +++    N+  +       ++E  G     VE A+
Sbjct: 179 DMRHAVEKR-----EEMHYSGGVEEFVKYLDRNKKALVPTPIMVRSEANGI---GVEAAL 230

Query: 307 AWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
            W +   E    + N I   +GGTH +G R ALTR +  YAE    K  I++  DD    
Sbjct: 231 WWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQVNGYAEANAKKEKIALTGDDCREG 290

Query: 366 AVGILSVFIREPE 378
              +LSV + +P+
Sbjct: 291 LTAVLSVKVPDPK 303


>gi|119369966|gb|ABL67997.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 159/430 (36%), Positives = 251/430 (58%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD++ Y++SGGLHGVG+SVVNALS+ L + + R   +++Q++  G P 
Sbjct: 1   EVIMTVLHAGGKFDDNAYKVSGGLHGVGVSVVNALSETLQLRIFRDGYVWTQEYHDGEPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+ +  +   K G+ I F+P P++F D   F    + K  +  A+L+  V      ++ 
Sbjct: 61  APVAR-GEASRKHGSTIRFKPSPQVFADTH-FHFEIIAKRLRELAFLNSGVHITLLDERG 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       E F++ GG++ +++    +++ I   + T   E+ G     VE A+ W E
Sbjct: 119 GRE-------EVFHYEGGIRAFVEHLNRSKTAIHPTVITLNGERDGI---VVEAALQWNE 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR + +Y E      K  + +  +D      
Sbjct: 169 GYSEAVLCFTNNIPQTDGGTHLAGFRGALTRTLNQYMEREGIIAKAKVVVSGEDTREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QT+ KLVS + +  VE+++ +    +L ++P EA  +   ++E + 
Sbjct: 229 AVLSVKVPDPKFSSQTEEKLVSSEVKPIVESSMSEALTIFLDEHPKEAQAIAAKIVEAAR 288

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   R+ RE   RK A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R +
Sbjct: 289 AREAARRARELTRRKGALDIANLPGKLADCQEKDPAKCEIYLVEGDSAGGSAKQGRDRRH 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++ +I  L+ ALG    +   +   LRY +VII+TDAD
Sbjct: 349 QAILPLKGKILNVERARFDKMLSSDEIGTLITALGTGIGAGDFDVAKLRYHRVIIITDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|148971327|gb|ABR20201.1| DNA gyrase subunit B [uncultured bacterium]
 gi|148971357|gb|ABR20216.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 426

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 166/433 (38%), Positives = 252/433 (58%), Gaps = 15/433 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD S+Y++SGGLHGVG +VVNALS+ + V + R  T F  +F  G P+
Sbjct: 1   EVIMTVLHAGGKFDQSSYKVSGGLHGVGAAVVNALSEWMDVRIWRDGTEFFIRFENGNPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL          GT + F+P P  F     FD A   +  +  A+L+  ++     ++ 
Sbjct: 61  APLRVVGPSERPTGTEVVFKPSPATFTR-TEFDFAVFERRLRELAFLNSGLEISLRDER- 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
               +  P +  F + GGL  ++     ++S + S   T   E KG+    +E+A++W +
Sbjct: 119 ----HATPIQSRFCYKGGLVEFVAWLDRSKSALISPPITASREDKGS-GIKIEFALSWND 173

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGI 369
                +  + N I+  +GGTH +G R ALTR + KYA+    K  +S++ +D+      +
Sbjct: 174 SFHETMLCFTNNIIQRDGGTHLAGFRSALTRVVSKYADAIGKKDNVSLVGEDMREGLTAV 233

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           LSV + +P+F+ QTK KLVS + Q  V+ A+ D  DH+   +P EA  L++ VI+ +  R
Sbjct: 234 LSVKVPDPKFSSQTKDKLVSSEVQPIVQAAIADVLDHWFETHPKEAKALVQKVIDAAAAR 293

Query: 430 LRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
              RK R++ R+   +    LPGKLADC +     +E+FIVEGDSAGGSAKQ R+R  QA
Sbjct: 294 EAARKARDLTRRKGVLDVSSLPGKLADCQERDPSKSEIFIVEGDSAGGSAKQGRDRRTQA 353

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE------DLRYEKVIIMT 542
           +LPL+GKILNV  +  +++ ++ +I  L+ ALG        E+       +RY +V+IMT
Sbjct: 354 ILPLKGKILNVERSRFDRMLSSAEIGTLITALGTGIGPADPEQGGFDIGKIRYHRVVIMT 413

Query: 543 DADVDGAHIASLL 555
           DADVDG+HI +LL
Sbjct: 414 DADVDGSHIRTLL 426


>gi|33187327|gb|AAP97526.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni]
          Length = 407

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 168/421 (39%), Positives = 235/421 (55%), Gaps = 18/421 (4%)

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFD  TY++SGGLHGVG+SVVNALS +L  TV R   I+ Q+FS G  +S   
Sbjct: 1   TVLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFG 60

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
              K +   GT I F PD +IF     FD   L K  +  AYL+ ++   +  ++     
Sbjct: 61  VIGKSKK-TGTTIEFWPDDQIFEVT-EFDYEILAKRFRELAYLNPKITINFKDNR----- 113

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE 314
             + + E F+F GG+  ++    +  +L  +  F+   E        VE A+ + +   E
Sbjct: 114 --VGKHESFHFEGGISQFVTDLNKKEALTKAIFFSVDEED-----VNVEVALLYNDTYSE 166

Query: 315 IT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
              S+ N I T +GGTHE+G R+ LTR I  Y E      ++   I  +D+    + ++S
Sbjct: 167 NLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGEDVREGLIAVVS 226

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V + EP+F GQTK KL S   +  V  A  +    Y  +NPIEA  ++   +  +  R  
Sbjct: 227 VKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREA 286

Query: 432 RRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +K RE   +K ++    LPGKLADC       +E+++VEGDSAGGSAKQ R RS QA+L
Sbjct: 287 AKKARELTRKKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAIL 346

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           PLRGKILNV  A  +KI  ++QI +++ A GC     +    LRY K+IIMTDADVDG+H
Sbjct: 347 PLRGKILNVEKARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSH 406

Query: 551 I 551
           I
Sbjct: 407 I 407


>gi|253826360|gb|ACT36483.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 156/415 (37%), Positives = 233/415 (56%), Gaps = 15/415 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKF    Y++SGGLHGVG+SVVNALS +L V V R+  ++ Q++  G P   +++  
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSKKLEVQVKREGKVYQQEYRCGAPQYDIKEIG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +     GT++TF PD +IF +   +D   L    +  A+L+  ++   + ++        
Sbjct: 61  E-SEMTGTQVTFWPDEEIFTETTEYDFDTLQSRIRELAFLNKGIEIVLTDER-------T 112

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
              + F + GG+ ++++   +NR  +       + EK       VE A+ + +     I 
Sbjct: 113 DISQTFIYEGGIISFVEHLNQNREPVHQPPIYVEGEKDHIQ---VEVALQYNDSYTENIY 169

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
           S+ N I T EGGTHESG + ALTR + +YA       +   ++  DD+      I+SV I
Sbjct: 170 SFANNINTHEGGTHESGFKSALTRILNEYARKYNAIKESDANLSGDDVREGLTAIISVKI 229

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRR 433
            +P+F GQTKTKL + + +  VE+   +  + +L +NP  A K++E  V  +      R+
Sbjct: 230 PDPQFEGQTKTKLGNSEVRGIVESLFAEKLEEFLQENPAIAKKIVEKGVQAQRAREAARK 289

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            +    RK+A+    LPGKLADCS   A  +E++IVEGDSAGGSAKQ R+R  QA+LPLR
Sbjct: 290 ARELTRRKSALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLR 349

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           GKILNV  A  +KI +N +I  ++ ALG            RY ++IIMTDADVDG
Sbjct: 350 GKILNVEKARLDKILSNAEIRAIITALGTGIGEDLDISKARYHRIIIMTDADVDG 404


>gi|148470244|gb|ABQ66069.1| gyrase b [uncultured bacterium]
          Length = 420

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 154/430 (35%), Positives = 243/430 (56%), Gaps = 15/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALS  L + + R+  ++ Q++  G P+
Sbjct: 1   EVIMTVLHAGGKFDENSYKVSGGLHGVGVSVVNALSTRLTLAIRREGELWEQEYHCGDPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+  K   +   GT + F PDP++F     F  ARL K  +  AYL+  +    + ++ 
Sbjct: 61  APIAAKGPAKG-TGTTVHFWPDPEVFES-TEFSFARLEKRFRELAYLNDGLTILLNDERG 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             ++ G+     +++ GG+  ++    ++R  +   +   K ++ G     V+ AI W +
Sbjct: 119 DRKREGV-----YHYEGGVAAFVLDINKSREAVHPTVIRIKGDRDGVM---VDTAIQWND 170

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R A+TR +  Y E      K  ++I + D+     
Sbjct: 171 GYNESVFPFTNNIPQADGGTHLTGFRSAMTRVLGGYMEREGIATKAKVTIDAADMREGMT 230

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERS 426
            +LSV + +P+F+ QTK KLVS + +  VE+ + +    +L + P EA  +   ++    
Sbjct: 231 AVLSVKVPDPKFSSQTKDKLVSSEVRPIVESVIAEGVGTFLDEKPKEAQAICAKIVEAAK 290

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R  
Sbjct: 291 AREAARKARDITRRKGALDIANLPGKLADCQEKDPALCEIYLVEGDSAGGSAKQGRDRKF 350

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +++  + +I  L+ ALG            LRY ++IIMTDAD
Sbjct: 351 QAILPLKGKILNVERARFDRMLESDEIGTLITALGTGIGQDEFNAGKLRYHRIIIMTDAD 410

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 411 VDGSHIRTLL 420


>gi|148971315|gb|ABR20195.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 173/430 (40%), Positives = 248/430 (57%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y+ISGGLHGVG+SVVNALS+ELH+T+ R   I+ Q +  GIP 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKISGGLHGVGVSVVNALSEELHLTIQRNGKIYEQNYHHGIPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL          GT+I F+P  + F +   F    L K  +  ++L+  +    + ++ 
Sbjct: 61  APLTITGDAS-TTGTQIWFKPSAETFSN-IEFHYDILAKRLRELSFLNSVITIELTDERV 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             + Y +   E       LK  L     N++ I  E+FT  +EK    R  VE A+ W +
Sbjct: 119 QKKMYIVMRVE-------LKRLLNISNRNKNPIIPEVFTLNSEKD---RIQVELAMQWND 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R ALTR +  Y E      K  +S   DD      
Sbjct: 169 SYQETIYCFTNNIPQKDGGTHLAGFRAALTRTLNNYIENEGYAKKAKVSTTGDDSREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
             LSV + +P+F+ QTK KLVS + +  VE+ + D F+ +L++NP  A  ++  +I+   
Sbjct: 229 AALSVKVPDPKFSSQTKDKLVSSEVKTVVESVVADKFNDFLLENPNIAKVIVNKIIDAAR 288

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                RR +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ R+R  
Sbjct: 289 AREAARRAREMTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRDRKF 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+  +Q++  L+ ALGC     +Y  + +RY +VI+MTDAD
Sbjct: 349 QAILPLKGKILNVEKARFDKMLASQEVATLITALGCGIGPDEYDPDKVRYHRVIMMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|327335539|gb|AEA49948.1| DNA gyrase subunit B [Aeromonas hydrophila]
          Length = 416

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 168/428 (39%), Positives = 250/428 (58%), Gaps = 17/428 (3%)

Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184
             +S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +
Sbjct: 1   EGRSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTY 60

Query: 185 SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244
             G P +PL++        GT + F P P IF D   F    L K  +  ++L+  V   
Sbjct: 61  HLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEILAKRLRELSFLNSGVSIR 118

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
              +++  E         F + GG+K +++   +N++ I  ++F   TE+ G     VE 
Sbjct: 119 LLDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEV 168

Query: 305 AIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDD 361
           A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      K   +   DD
Sbjct: 169 AMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDD 228

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
           +    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++NP +A  ++  
Sbjct: 229 VREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNK 288

Query: 422 VIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
           +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ
Sbjct: 289 IIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQ 348

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 349 GRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGRDEYNPDKLRYHNII 408

Query: 540 IMTDADVD 547
           IMTDADVD
Sbjct: 409 IMTDADVD 416


>gi|148616464|gb|ABQ96975.1| GyrB [Nocardiopsis metallicus]
          Length = 424

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 158/430 (36%), Positives = 234/430 (54%), Gaps = 10/430 (2%)

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
           +E+I+T LHAGGKFD  +Y +SGGLHGVGISVVNALS  L V + +Q  ++ Q +    P
Sbjct: 1   IEVIMTVLHAGGKFDGKSYAVSGGLHGVGISVVNALSTALDVEIRQQGHVWRQHYEMTAP 60

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
              L K E+  ++ GT+ITF  D  IF     F    L +  Q  A+L+  +      ++
Sbjct: 61  TGELIKGEET-DETGTQITFWADGSIFETTT-FSFETLARRMQEMAFLNKGLSITIRDER 118

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
                   P    F++  GL  Y++     +    + I + + + +G     VE A+ W 
Sbjct: 119 -PDHIDDAPVVNTFHYEEGLSDYVRHINAKKEPAHASIISFEEDGEGI---AVEVAMQWN 174

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISA 366
           +     + ++ NTI T EGGTHE G R ALT  + +YA   +    +  ++  DD+    
Sbjct: 175 QSYTSSVHTFANTINTAEGGTHEEGFRSALTTLVNRYARDQKLLRDKEDNLTGDDIREGL 234

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIER 425
             I+SV + +P+F GQTKTKL + +A+  V+    +    +  +NP E   ++ +     
Sbjct: 235 TAIISVKLADPQFEGQTKTKLGNTEAKSFVQKVTNEHLRDWFERNPGEGKDIVSKASQAA 294

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
                 R+ +    RKT +    LPGKL+DC        E++IVEGDSAGGSAK  RN  
Sbjct: 295 RARVAARQARDLTRRKTLLETTSLPGKLSDCQSTNPEECEVYIVEGDSAGGSAKGGRNPH 354

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545
           NQA+LP+RGKILNV  +  ++I  N ++  ++ ALG     ++  E LRY KVI+MTDAD
Sbjct: 355 NQAILPIRGKILNVEKSRIDRILKNNEVQAIITALGTGIHEEFDAEKLRYHKVILMTDAD 414

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 415 VDGSHIRTLL 424


>gi|148470174|gb|ABQ66035.1| gyrase b [uncultured bacterium]
          Length = 420

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 152/430 (35%), Positives = 242/430 (56%), Gaps = 15/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALS +L + + R+  ++ Q++  G P+
Sbjct: 1   EVIMTVLHAGGKFDENSYKVSGGLHGVGVSVVNALSTKLTLAIRREGELWEQEYHCGDPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+  K   +   GT + F PDP++F     F  ARL K  +  AYL+  +    + ++ 
Sbjct: 61  APIAAKGPAKG-TGTTVHFWPDPEVFES-TEFSFARLEKRFRELAYLNDGLTILLNDERG 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             ++ G+     +++ GG   ++    ++R  +   +   K ++ G     V+ AI W +
Sbjct: 119 DRKREGV-----YHYEGGAAAFVLDINKSREAVHPTVIRIKGDRDGVM---VDTAIQWND 170

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R A+TR +  Y E      K  ++I + D+     
Sbjct: 171 GYNESVFPFTNNIPQADGGTHLTGFRSAMTRVLGGYMEREGIATKAKVTIDAADMREGMT 230

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERS 426
            +LSV + +P+F+ Q K KLVS + +  VE+ + +    +L + P EA  +   ++    
Sbjct: 231 AVLSVKVPDPKFSSQAKDKLVSSEVRPIVESVIAEGVGTFLDEKPKEAQAICAKIVEAAK 290

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R  
Sbjct: 291 AREAARKARDITRRKGALDIANLPGKLADCQEKDPALCEIYLVEGDSAGGSAKQGRDRKF 350

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDAD 545
           QA+LPL+G+ILNV  A  +++  + +I  L+ ALG            LRY ++IIMTDAD
Sbjct: 351 QAILPLKGRILNVERARFDRMLESDEIGTLITALGTGIGQDEFNAGKLRYHRIIIMTDAD 410

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 411 VDGSHIRTLL 420


>gi|295979455|dbj|BAJ07400.1| DNA gyrase subunit B [Paracoccus sp. F1547]
          Length = 313

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 103/322 (31%), Positives = 163/322 (50%), Gaps = 18/322 (5%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DN +DE +AG+A+ + V +  +  ++V DNGRGIPV+ HP    
Sbjct: 1   DTDDGSGLHHMVYEVVDNGIDEALAGHADFVRVKIHADNSVSVRDNGRGIPVDMHP-TEG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALSD L + + R       +F +
Sbjct: 60  VSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLELRIWRNGQEHYARFEK 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFR-----PDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241
           G     L        + GT + F       DP+       +    L    +  A+L+  V
Sbjct: 120 GETAEHLRVVGDAPGESGTEVRFMASSKTTDPEGTFSNLDYVFKTLENRLRELAFLNSGV 179

Query: 242 KTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
           +     ++        P + E ++ GG++ +++    +++           E+ G     
Sbjct: 180 RIIIEDER-----PAEPLRTELFYDGGVREFVKYLDRSKTSTMETPIFMTGERNGI---G 231

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISII 358
           VE A+ W +     +  + N I   +GGTH +G R ALTR I KYA+ +    K  +   
Sbjct: 232 VEVAMWWNDSYHETVLPFTNNIPQRDGGTHMAGFRGALTRVITKYAQESGIARKEKVDFT 291

Query: 359 SDDLMISAVGILSVFIREPEFA 380
            DD       +LSV + +P+F+
Sbjct: 292 GDDAREGLTCVLSVKVPDPKFS 313


>gi|148470276|gb|ABQ66085.1| gyrase b [uncultured bacterium]
          Length = 420

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 154/430 (35%), Positives = 244/430 (56%), Gaps = 15/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALS +L + + R+  ++ Q++  G P+
Sbjct: 1   EVIMTVLHAGGKFDENSYKVSGGLHGVGVSVVNALSTKLTLAIRREGELWEQEYHCGDPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+  K   +   GT + F PDP++F     F  ARL K  +  AYL+  +    + ++ 
Sbjct: 61  APIAAKGPAKG-TGTTVHFWPDPEVFES-TEFSFARLEKRFRELAYLNDGLTILLNDERG 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             ++ G+     +++ GG+  ++    ++R  +   +   K ++ G     V+ AI W +
Sbjct: 119 DRKREGV-----YHYQGGVAAFVLDINKSREAVHPTVIRIKGDRDGVM---VDTAIQWND 170

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R A+TR +  Y E      K  ++I + D+     
Sbjct: 171 GYNESVFPFTNNIPQADGGTHLTGFRSAMTRVLGGYMEREGIATKAKVTIDAADMREGMT 230

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERS 426
            +LSV + +P+F+ QTK KLVS + +  VE+ + +    +L + P EA  +   ++    
Sbjct: 231 AVLSVKVPDPKFSSQTKDKLVSSEVRPIVESVIAEGVGTFLDEKPKEAQAICAKIVEAAK 290

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R  
Sbjct: 291 AREAARKARDITRRKGALDIANLPGKLADCQEKDPALCEIYLVEGDSAGGSAKQGRDRKF 350

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +++  + +I  L+ ALG            LRY ++IIMTDAD
Sbjct: 351 QAILPLKGKILNVERARFDRMLESDEIGALITALGTGIGQDEFNAGKLRYHRIIIMTDAD 410

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 411 VDGSHIRTLL 420


>gi|29652996|gb|AAO87467.1| DNA gyrase B [Listeria monocytogenes]
          Length = 212

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 94/214 (43%), Positives = 130/214 (60%), Gaps = 2/214 (0%)

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +R +    + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+L
Sbjct: 1   AKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAIL 60

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           P+RGKILNV  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAH
Sbjct: 61  PIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAH 120

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           I +LLLT FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  
Sbjct: 121 IRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDT 178

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644
           K  I R+KGLGEM   QL +T M+   RTLL+V 
Sbjct: 179 KYSIQRYKGLGEMNPEQLWDTTMNPEHRTLLQVN 212


>gi|148470176|gb|ABQ66036.1| gyrase b [uncultured bacterium]
          Length = 420

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 154/430 (35%), Positives = 244/430 (56%), Gaps = 15/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALS +L + + R+  ++ Q++  G P+
Sbjct: 1   EVIMTVLHAGGKFDENSYKVSGGLHGVGVSVVNALSTKLTLAIRREGELWEQEYHCGDPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+  K   +   GT + F PDP++F     F  ARL K  +  AYL+  +    + ++ 
Sbjct: 61  APIAAKGPAKG-TGTTVHFWPDPEVFES-TEFSFARLEKRFRELAYLNDGLTILLNDERG 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             ++ G+     +++ GG+  ++    ++R  +   +   K ++ G     V+ AI W +
Sbjct: 119 DRKREGV-----YHYEGGVAAFVLDINKSREAVHPTVIRIKGDRDGVM---VDTAIQWND 170

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R A+TR +  Y E      K  ++I + D+     
Sbjct: 171 GYNESVFPFTNNIPQADGGTHLTGFRSAMTRVLGGYMEREGIATKAKVTIDAADMREGMT 230

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERS 426
            +LSV + +P+F+ QTK KLVS + +  VE+ + +    +L + P EA  +   ++    
Sbjct: 231 AVLSVKVPDPKFSSQTKDKLVSSEVRPIVESVIAEGVGTFLDEKPKEAQAICAKIVEAAK 290

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R  
Sbjct: 291 AREAARKARDITRRKGALDIANLPGKLADCQEKDPALCEIYLVEGDSAGGSAKQGRDRKF 350

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +++  + +I  L+ ALG            LRY ++IIMTDAD
Sbjct: 351 QAILPLKGKILNVERARFDRMLESDEIGTLITALGTGIGQDEFNAGKLRYHRIIIMTDAD 410

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 411 VDGSHIRTLL 420


>gi|119369890|gb|ABL67959.1| DNA gyrase subunit B [Acidithiobacillus ferrooxidans]
          Length = 418

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 160/430 (37%), Positives = 251/430 (58%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD++ Y++SGGLHGVG+SVVNALS+ L + + R   +++Q++  G P 
Sbjct: 1   EVIMTVLHAGGKFDDNAYKVSGGLHGVGVSVVNALSETLQLRIFRDGYVWTQEYHDGEPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+ +      K G+ I F+P P++F D   F    + K  +  A+L+  V      ++ 
Sbjct: 61  APIAR-GDASRKHGSTIRFKPSPQVFADTH-FHFEIIAKRLRELAFLNSGVHITLLDERA 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       E F++ GG++ +++    +++ I   + T   E+ G     VE A+ W E
Sbjct: 119 SRE-------ETFHYEGGIRAFVEHLNRSKTAIHPSVITLTGERDGI---VVEAALQWNE 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR + +Y E      K  +++  +D      
Sbjct: 169 GYNEAVLCFTNNIPQADGGTHLAGFRGALTRTLNQYMEREGIIAKAKVAVSGEDAREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE+++ +    +L ++P EA  +   ++E + 
Sbjct: 229 AVLSVKVPDPKFSSQTKEKLVSSEVKPIVESSMSEALTMFLGEHPKEAQAIAAKIVEAAR 288

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   R+ RE   RK A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R +
Sbjct: 289 AREAARRARELTRRKGALDIANLPGKLADCQEKDPAQCEIYLVEGDSAGGSAKQGRDRRH 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +++ ++ +I  L+ ALG    +   +   LRY +VIIMTDAD
Sbjct: 349 QAILPLKGKILNVERARFDRMLSSDEIGTLITALGTGIGAGDFDVAKLRYHRVIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|2196810|gb|AAB80822.1| DNA gyrase beta-subunit [Shewanella putrefaciens]
          Length = 419

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 159/430 (36%), Positives = 245/430 (56%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L +T+ R   ++ Q ++ G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLQMTIRRAGKVYEQFYTHGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+++        GT I F P  +       F    L K  +  ++L+  V      +++
Sbjct: 61  APIKEIGDATK-TGTEIRFWPS-EYTFSDVEFHFEILAKRVRELSFLNSGVGIRLVDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + E F + GG+  ++     N++ ++ ++F    E++     TVE A+ W +
Sbjct: 119 N-------KNEFFKYEGGISAFVDYLNRNKTPLNKDVFHFMQERED--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                I  + N I   +GGTH  G R ALTR +  Y E      K   S   DD      
Sbjct: 170 GYQENIFCFTNNIPQRDGGTHLVGFRSALTRNLNSYMENEGYNKKGKTSATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +  + YL++NP +A  ++  +++   
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEKLNDYLLENPADAKLIVGKIVDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ + +  RK A+    LPGKLADC +     +E+ IVEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARKAREKTRRKGALDLGGLPGKLADCQEKDPGLSEINIVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC     +Y  +  RY  +IIMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGADEYNPDKTRYHNIIIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHILTLL 419


>gi|29652889|gb|AAO87414.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652916|gb|AAO87427.1| DNA gyrase B [Listeria monocytogenes]
 gi|29653000|gb|AAO87469.1| DNA gyrase B [Listeria monocytogenes]
          Length = 212

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 94/213 (44%), Positives = 130/213 (61%), Gaps = 2/213 (0%)

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +R +    + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+L
Sbjct: 2   AKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAIL 61

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           P+RGKILNV  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAH
Sbjct: 62  PIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAH 121

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           I +LLLT FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  
Sbjct: 122 IRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDT 179

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRV 643
           K  I R+KGLGEM   QL +T M+   RTLL+V
Sbjct: 180 KYSIQRYKGLGEMNPEQLWDTTMNPEHRTLLQV 212


>gi|29652821|gb|AAO87380.1| DNA gyrase B [Listeria monocytogenes]
          Length = 211

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 94/213 (44%), Positives = 130/213 (61%), Gaps = 2/213 (0%)

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +R +    + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+L
Sbjct: 1   AKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAIL 60

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           P+RGKILNV  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAH
Sbjct: 61  PIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAH 120

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           I +LLLT FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  
Sbjct: 121 IRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDT 178

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRV 643
           K  I R+KGLGEM   QL +T M+   RTLL+V
Sbjct: 179 KYSIQRYKGLGEMNPEQLWDTTMNPEHRTLLQV 211


>gi|29652687|gb|AAO87313.1| DNA gyrase B [Listeria monocytogenes]
 gi|219821135|gb|ACL37688.1| DNA gyrase subunit B [Listeria monocytogenes]
 gi|219821137|gb|ACL37689.1| DNA gyrase subunit B [Listeria monocytogenes]
 gi|219821139|gb|ACL37690.1| DNA gyrase subunit B [Listeria monocytogenes]
 gi|219821141|gb|ACL37691.1| DNA gyrase subunit B [Listeria monocytogenes]
 gi|219821143|gb|ACL37692.1| DNA gyrase subunit B [Listeria monocytogenes]
 gi|219821145|gb|ACL37693.1| DNA gyrase subunit B [Listeria monocytogenes]
 gi|219821147|gb|ACL37694.1| DNA gyrase subunit B [Listeria monocytogenes]
 gi|219821149|gb|ACL37695.1| DNA gyrase subunit B [Listeria monocytogenes]
 gi|219821151|gb|ACL37696.1| DNA gyrase subunit B [Listeria monocytogenes]
 gi|219821153|gb|ACL37697.1| DNA gyrase subunit B [Listeria monocytogenes]
 gi|219821155|gb|ACL37698.1| DNA gyrase subunit B [Listeria monocytogenes]
 gi|219821157|gb|ACL37699.1| DNA gyrase subunit B [Listeria monocytogenes]
 gi|219821159|gb|ACL37700.1| DNA gyrase subunit B [Listeria monocytogenes]
 gi|219821161|gb|ACL37701.1| DNA gyrase subunit B [Listeria monocytogenes]
 gi|219821163|gb|ACL37702.1| DNA gyrase subunit B [Listeria monocytogenes]
 gi|219821165|gb|ACL37703.1| DNA gyrase subunit B [Listeria monocytogenes]
 gi|219821167|gb|ACL37704.1| DNA gyrase subunit B [Listeria monocytogenes]
 gi|219821169|gb|ACL37705.1| DNA gyrase subunit B [Listeria monocytogenes]
 gi|219821171|gb|ACL37706.1| DNA gyrase subunit B [Listeria monocytogenes]
 gi|219821173|gb|ACL37707.1| DNA gyrase subunit B [Listeria monocytogenes]
          Length = 213

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 94/213 (44%), Positives = 130/213 (61%), Gaps = 2/213 (0%)

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +R +    + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+L
Sbjct: 3   AKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAIL 62

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           P+RGKILNV  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAH
Sbjct: 63  PIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAH 122

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           I +LLLT FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  
Sbjct: 123 IRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDT 180

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRV 643
           K  I R+KGLGEM   QL +T M+   RTLL+V
Sbjct: 181 KYSIQRYKGLGEMNPEQLWDTTMNPEHRTLLQV 213


>gi|29652930|gb|AAO87434.1| DNA gyrase B [Listeria monocytogenes]
          Length = 214

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 94/213 (44%), Positives = 130/213 (61%), Gaps = 2/213 (0%)

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +R +    + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+L
Sbjct: 4   AKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAIL 63

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           P+RGKILNV  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAH
Sbjct: 64  PIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAH 123

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           I +LLLT FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  
Sbjct: 124 IRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDT 181

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRV 643
           K  I R+KGLGEM   QL +T M+   RTLL+V
Sbjct: 182 KYSIQRYKGLGEMNPEQLWDTTMNPEHRTLLQV 214


>gi|538664|pir||C49347 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) B chain -
           Caulobacter crescentus (fragment)
 gi|13592169|gb|AAC43046.2| DNA gyrase B subunit [Caulobacter crescentus CB15]
          Length = 203

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 81/185 (43%), Positives = 119/185 (64%), Gaps = 2/185 (1%)

Query: 20  SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLF 78
           +E  +       +P    + A+  Y A SI++L+GL+ VR RPGMYIG TD+   LHH+ 
Sbjct: 2   TENTEDQVPDLSTPEMTTEEAAAQYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMV 61

Query: 79  SEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLH 138
            EV+DNA+DE +AG+A  ++V L+ +G +TV D+GRGIPV+ H +    S  E+I+T LH
Sbjct: 62  YEVVDNAIDEALAGHATKVQVILNADGSVTVTDDGRGIPVDMH-EGEGVSAAEVIMTQLH 120

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD ++Y++SGGLHGVG+S VNALSD L + + R   +   +F RG  ++ L+    
Sbjct: 121 AGGKFDQNSYKVSGGLHGVGVSDVNALSDWLELLIHRNGKVHQMRFERGDAVTSLKVTGD 180

Query: 199 VRNKR 203
              + 
Sbjct: 181 SPVRT 185


>gi|213609168|ref|ZP_03368994.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 160

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 79/160 (49%), Positives = 113/160 (70%), Gaps = 2/160 (1%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHADNSVSVTDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           SVVNALS +L + + R   I  Q +  G+P +PL      
Sbjct: 121 SVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT 160


>gi|119369962|gb|ABL67995.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 420

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 155/430 (36%), Positives = 246/430 (57%), Gaps = 15/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+  ++ Q++  G P+
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSTKLTLAIRREGELWEQEYHCGDPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+  K   +  RGT + F PDP++F     F  ARL K  +  AYL+  +    + ++ 
Sbjct: 61  APIAAKGPAKG-RGTTVLFWPDPEVFES-TEFSFARLEKRFRELAYLNDGLTILLNDERG 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             ++ G+     +++ GG+  ++    ++R  +   +   K ++ G     V+ AI W +
Sbjct: 119 DRKREGV-----YHYEGGVAAFVLDINKSREAVHPTVIRIKGDRDGVM---VDTAIQWND 170

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R A+TR +  Y E      K  ++I + D+     
Sbjct: 171 GYNESVFPFTNNIPQVDGGTHLTGFRSAMTRVLGGYMEREGIATKAKVTIDAADMREGMT 230

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERS 426
            +LSV + +P+F+ QTK KLVS + +  VE+ + +    +L + P EA  +   ++    
Sbjct: 231 AVLSVKVPDPKFSSQTKDKLVSSEVRPIVESVIAEGVGTFLDEKPKEAQAICAKIVEAAK 290

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R  
Sbjct: 291 AREAARKARDLTRRKGALDIANLPGKLADCQEKDLALCEIYLVEGDSAGGSAKQGRDRKF 350

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +++  + +I  L+ ALG            LRY ++IIMTDAD
Sbjct: 351 QAILPLKGKILNVERARFDRMLESDEIGTLITALGTGIGQDEFNAGKLRYHRIIIMTDAD 410

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 411 VDGSHIRTLL 420


>gi|305677638|pdb|2XKK|A Chain A, Crystal Structure Of Moxifloxacin, Dna, And A. Baumannii
           Topo Iv (Pare-Parc Fusion Truncate)
 gi|305677639|pdb|2XKK|C Chain C, Crystal Structure Of Moxifloxacin, Dna, And A. Baumannii
           Topo Iv (Pare-Parc Fusion Truncate)
          Length = 767

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 106/264 (40%), Positives = 159/264 (60%), Gaps = 8/264 (3%)

Query: 419 LEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
           +E  I ++  RL+    ++V RK  +    LPGKLADC       +ELFIVEGDSAGGSA
Sbjct: 1   MEMAISKAGRRLK--AAKKVERKKIVSGPALPGKLADCVGQTREESELFIVEGDSAGGSA 58

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538
           KQAR+++ QA++P+RGKILN     S+++  +Q++ D+  A+G    S     +LRY K+
Sbjct: 59  KQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIAIAIGVDPGSDDL-SELRYGKI 117

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQ 598
            I+ DAD DG HIA+LL   F +    L+E+ HL++  PPLFRI  G    YA D+E  +
Sbjct: 118 CILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAMPPLFRIDIGKDVHYALDDEELE 177

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            IL+  K  G    +I+RFKGLGEM A QL+ET MD N R L++++++    +       
Sbjct: 178 TILKNVK--GNKNPQITRFKGLGEMNAIQLRETTMDPNTRRLVQLDLDDAHLTAGLLDKL 235

Query: 659 INKLMGTKADERFKFIQERASFID 682
              L   +A +R ++++++ +  D
Sbjct: 236 ---LAKKRAADRKQWLEQKGNLAD 256


>gi|305677637|pdb|2XKJ|E Chain E, Crystal Structure Of Catalytic Core Of A. Baumannii Topo
           Iv (Pare-Parc Fusion Truncate)
          Length = 767

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 106/264 (40%), Positives = 159/264 (60%), Gaps = 8/264 (3%)

Query: 419 LEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
           +E  I ++  RL+    ++V RK  +    LPGKLADC       +ELFIVEGDSAGGSA
Sbjct: 1   MEMAISKAGRRLK--AAKKVERKKIVSGPALPGKLADCVGQTREESELFIVEGDSAGGSA 58

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538
           KQAR+++ QA++P+RGKILN     S+++  +Q++ D+  A+G    S     +LRY K+
Sbjct: 59  KQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIAIAIGVDPGSDDL-SELRYGKI 117

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQ 598
            I+ DAD DG HIA+LL   F +    L+E+ HL++  PPLFRI  G    YA D+E  +
Sbjct: 118 CILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAMPPLFRIDIGKDVHYALDDEELE 177

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            IL+  K  G    +I+RFKGLGEM A QL+ET MD N R L++++++    +       
Sbjct: 178 TILKNVK--GNKNPQITRFKGLGEMNAIQLRETTMDPNTRRLVQLDLDDAHLTAGLLDKL 235

Query: 659 INKLMGTKADERFKFIQERASFID 682
              L   +A +R ++++++ +  D
Sbjct: 236 ---LAKKRAADRKQWLEQKGNLAD 256


>gi|119369902|gb|ABL67965.1| DNA gyrase subunit B [Acidithiobacillus ferrooxidans]
          Length = 418

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 160/430 (37%), Positives = 251/430 (58%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD++ Y++SGGLHGVG+SVVNALS+ L + + R   +++Q++  G P 
Sbjct: 1   EVIMTVLHAGGKFDDNAYKVSGGLHGVGVSVVNALSETLQLRIFRDGYVWTQEYHDGEPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+ +      K G+ I F+P P++F D   F    + K  +  A+L+  V      ++ 
Sbjct: 61  APIAR-GDASRKHGSTIRFKPPPQVFADTH-FHFEIIAKRLRELAFLNSGVHITLLDERA 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       E F++ GG++ +++    +++ I   + T   E+ G     VE A+ W E
Sbjct: 119 SRE-------ETFHYEGGIRAFVEHLNRSKTAIHPSVITLTGERDGI---VVEAALQWNE 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR + +Y E      K  +++  +D      
Sbjct: 169 GYNEAVLCFTNNIPQADGGTHLAGFRGALTRTLNQYMEREGIIAKAKVAVSGEDAREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE+++ +    +L ++P EA  +   ++E + 
Sbjct: 229 AVLSVKVPDPKFSSQTKEKLVSSEVKPIVESSMSEALTMFLDEHPKEAQAIAAKIVEAAR 288

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   R+ RE   RK A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R +
Sbjct: 289 AREAARRARELTRRKGALDIANLPGKLADCQEKDPAQCEIYLVEGDSAGGSAKQGRDRRH 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +++ ++ +I  L+ ALG    +   +   LRY +VIIMTDAD
Sbjct: 349 QAILPLKGKILNVERARFDRMLSSDEIGTLITALGTGIGAGDFDVAKLRYHRVIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|68166168|gb|AAY88017.1| DNA gyrase subunit B [Listeria seeligeri]
 gi|68166170|gb|AAY88018.1| DNA gyrase subunit B [Listeria seeligeri]
 gi|68166172|gb|AAY88019.1| DNA gyrase subunit B [Listeria seeligeri]
 gi|68166174|gb|AAY88020.1| DNA gyrase subunit B [Listeria seeligeri]
 gi|68166176|gb|AAY88021.1| DNA gyrase subunit B [Listeria seeligeri]
 gi|68166178|gb|AAY88022.1| DNA gyrase subunit B [Listeria seeligeri]
 gi|73698012|gb|AAZ81551.1| DNA gyrase subunit B [Listeria seeligeri]
 gi|73698014|gb|AAZ81552.1| DNA gyrase subunit B [Listeria seeligeri]
          Length = 217

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 95/224 (42%), Positives = 140/224 (62%), Gaps = 7/224 (3%)

Query: 45  DASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGN 104
           +   I++LEGLE VR RPGMYIG T ++ LHHL  E++DNA+DE +AG+   IE++++ +
Sbjct: 1   NEDQIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVWEIVDNAIDEALAGFCTEIEITIEAD 60

Query: 105 GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNA 164
             +TV DNGRGIP   + K   + T+E+I T LHAGGKF    Y++SGGLHGVG SVVNA
Sbjct: 61  NSITVRDNGRGIPTGINEKI-GRPTVEVIFTVLHAGGKFGGGGYKVSGGLHGVGASVVNA 119

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LS  L V V R+   + Q+F RG  +  +E++ +  + RGT + F PDP+IF +   FD 
Sbjct: 120 LSTYLEVYVHREGKKYYQRFERGDVVMDMEEQGET-DYRGTIVHFTPDPQIFSETTEFDF 178

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
             L   T+  A+L+  +       +E  +      +++F++ GG
Sbjct: 179 DTLRTRTRELAFLNRGLTISIEDKREEHK-----VRKDFHYEGG 217


>gi|330898604|gb|EGH30023.1| DNA gyrase subunit B [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 628

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 139/390 (35%), Positives = 216/390 (55%), Gaps = 15/390 (3%)

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                F    L K  +  ++L+  V      ++   E       E F + GGL+ +++  
Sbjct: 1   FKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYL 53

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
             N++ ++           G     VE A+ W +     +  + N I   +GGTH  G R
Sbjct: 54  NTNKTPVNEVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFR 110

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +
Sbjct: 111 SALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVK 170

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGK 452
             VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPGK
Sbjct: 171 TAVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGK 230

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q+
Sbjct: 231 LADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQE 290

Query: 513 IMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFF++++ +LIE+ +
Sbjct: 291 VGTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGY 350

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           +++  PPL+++ +G +  Y  D+E  ++ +
Sbjct: 351 IYIAQPPLYKVKKGKQEQYIKDDEAMEEYM 380



 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 4/91 (4%)

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
              ++ L         +  I R+KGLGEM   QL ET MD + R +L+V I   +     
Sbjct: 541 NEFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIG---- 596

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
                N LMG   + R  FI+  A  + ++ 
Sbjct: 597 ADQIFNTLMGDAVEPRRDFIESNALAVSNLD 627


>gi|307939324|gb|ADN95853.1| DNA gyrase B [Hymenobacter fastidiosus]
          Length = 433

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 172/437 (39%), Positives = 253/437 (57%), Gaps = 21/437 (4%)

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           +T LHAGGKFD  +Y++SGGLHGVG+S VNALS +L VTV R   ++ Q++  G+P   +
Sbjct: 3   MTVLHAGGKFDKDSYKVSGGLHGVGVSCVNALSSDLKVTVRRNGHMYEQEYKIGVPQYAV 62

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           ++        GT + F PD  IF +   +    +    +  +YL+  ++   +  +E  E
Sbjct: 63  KEIGDTEEH-GTEVEFLPDASIFTESV-YKYETVANRLRELSYLNKGIRITLTDRRE-KE 119

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP 313
             G    EEF+  GGL  ++Q     R+++       ++EK GT    VE A+ + +   
Sbjct: 120 DDGSFLYEEFFSHGGLSEFVQYLDSGRTVLMPAPIHVESEKGGTP---VEVALQYNDSYQ 176

Query: 314 EI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGIL 370
           E   SY N I T EGGTH +G R ALTR +K YA+ +    K  + ++ DD       ++
Sbjct: 177 EHIFSYVNNINTIEGGTHVAGFRSALTRTLKAYADKSGLLEKAKVEVLGDDFREGLTAVI 236

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV ++EP+F GQTKTKL + D    V  A+ +  + YL +NP EA  ++E VI  ++ R+
Sbjct: 237 SVKVQEPQFEGQTKTKLGNSDVSGAVNTAVGEILNQYLQENPKEARIIVEKVILAAKARV 296

Query: 431 RRRKQREVNRKTAIRKLRL-PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK RE+ ++ ++      PGKLADCS++     EL++VEGDSAGG+AKQ RNR+ QA+
Sbjct: 297 AARKAREMVQRKSVLGSNSLPGKLADCSESDPAICELYLVEGDSAGGTAKQGRNRAFQAI 356

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY-----------REEDLRYEKV 538
           LPLRGKILNV  A   +I  N++I +++ ALG     +              + LRY K+
Sbjct: 357 LPLRGKILNVEKAQEHRIYENEEIRNMITALGVSFEKKTDEDDGSTTRSLNVDKLRYHKI 416

Query: 539 IIMTDADVDGAHIASLL 555
           IIMTDADVDG+HI +LL
Sbjct: 417 IIMTDADVDGSHIRTLL 433


>gi|190148824|gb|ACE63387.1| DNA gyrase B subunit [Streptomonospora alba]
          Length = 423

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 145/429 (33%), Positives = 235/429 (54%), Gaps = 10/429 (2%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD  +Y +SGGLHGVG++VVNALS  L + + R   ++ Q +S   P+
Sbjct: 1   EVIMTVLHAGGKFDGKSYAVSGGLHGVGVTVVNALSSRLEIEICRDGNVWRQSYSTARPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PLE+ E+     GT+  F  D  IF     +    L +  Q  A+L+  +      ++ 
Sbjct: 61  APLERGEETSE-TGTQTVFWADDTIFESTT-YSFETLARRMQEMAFLNKGLSITIRGER- 117

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT-HRGTVEWAIAWC 309
                  P    +++  G+  ++      +    + I   + E +G     +++W  ++ 
Sbjct: 118 PEFVGDTPLVHTYHYENGISDFVAHINTTKEPAHASIIGFEEEGEGISTEISMQWNQSFT 177

Query: 310 EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                + ++ NTI T EGGTHE G R ALT  + +YA   +   ++  ++  DD+     
Sbjct: 178 ---SSVHTFANTINTAEGGTHEEGFRTALTSVVNRYAREQKLLREKDDNLTGDDIREGLT 234

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            I+SV + +P+F GQTKTKL + +A+  V+    +    +  +NP EA  ++    + + 
Sbjct: 235 AIISVKLADPQFEGQTKTKLGNTEAKSFVQRVTHEHLRDWFERNPGEAKDVVTKASQAAR 294

Query: 428 ERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R+  R+ R++ ++  +     LPGKL+DC       +E++IVEGDSAGGSAK  R+   
Sbjct: 295 ARIAARQARDLTQRKTLLESTSLPGKLSDCQSTEPEKSEVYIVEGDSAGGSAKGGRDPHY 354

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADV 546
           QA+LP+RGKILNV  +  ++I  N ++  ++ ALG      +    LRY K+I+MTDADV
Sbjct: 355 QAILPIRGKILNVEKSRIDRILKNNEVQAIITALGTGIHDDFDASKLRYHKIILMTDADV 414

Query: 547 DGAHIASLL 555
           DG+HI +LL
Sbjct: 415 DGSHIRTLL 423


>gi|148470215|gb|ABQ66055.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 164/428 (38%), Positives = 234/428 (54%), Gaps = 13/428 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFDNS Y++SGGLHGVG+SVVNALS  L + + ++  +  Q + +G+P 
Sbjct: 1   EVIMTVLHAGGKFDNSLYKVSGGLHGVGVSVVNALSRRLELEIYQEGRLHRQVYHQGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL         RGT I F PD  I      F    L    +  A+L+  +         
Sbjct: 61  APLSVVG-TTALRGTSIRFWPDLSIMET-DTFLFDTLAHRFRELAFLNPILTIV------ 112

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
              +     +E F+F GG+K+Y +   EN+  I  E+   + E     +  V +      
Sbjct: 113 -LREEESLREETFHFEGGIKSYNEFLNENKKTIH-EVLFFRRELPSGAQFEVAFQYQETT 170

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
           +N  I  + N I T EGGTH  G R ALTR I ++ +  Q  +   +  +D+      ++
Sbjct: 171 DNETILGFANNIFTKEGGTHIKGFRTALTRVINRFIKDKQLNKGEELRGEDIREGLTAVV 230

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV I +P+F GQTK KL S      +E  L +       + P  A K+ +  I+ +  R 
Sbjct: 231 SVRIPDPQFEGQTKAKLGSSWVSGAMETFLAEEMQERFEEFPQIAKKIADKAIQTAMARE 290

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK +E   RK  +    LPGKLADC ++     EL+IVEGDSAGGSAKQ R+R  QA+
Sbjct: 291 AARKAKELAKRKNVLEGSNLPGKLADCQESDPAKCELYIVEGDSAGGSAKQGRDRKFQAI 350

Query: 490 LPLRGKILNVASA-GSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVD 547
           LPL+GKILNV  A G+E+   + ++  L+ A+GC   ++   +  LRY K+IIMTDADVD
Sbjct: 351 LPLKGKILNVEKAGGAERFVTHDEVRALITAVGCGLGNEEYSQKNLRYHKIIIMTDADVD 410

Query: 548 GAHIASLL 555
           G+HI +LL
Sbjct: 411 GSHIRTLL 418


>gi|53988807|gb|AAV28318.1| DNA gyrase subunit B [Listeria welshimeri]
          Length = 217

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 95/224 (42%), Positives = 139/224 (62%), Gaps = 7/224 (3%)

Query: 45  DASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGN 104
           +   I++LEGLE VR RPGMYIG T ++ LHHL  E++DNA+DE +AG+   IE++++ +
Sbjct: 1   NEDQIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVWEIVDNAIDEALAGFCTEIEITIESD 60

Query: 105 GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNA 164
             +TV DNGRGIP   + K   + T+E+I T LHAGGKF    Y++SGGLHGVG SVVNA
Sbjct: 61  NSITVRDNGRGIPTGINEKI-GRPTVEVIFTVLHAGGKFGGGGYKVSGGLHGVGASVVNA 119

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LS  L V V R+   + Q+F RG  +  +E + +  + RGT + F PDP+IF +   FD 
Sbjct: 120 LSTSLEVYVHREGQKYYQRFERGDVVMDMEVQGET-DYRGTIVHFTPDPQIFTETTEFDF 178

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
             L   T+  A+L+  +       +E  +      +++F++ GG
Sbjct: 179 DTLRTRTRELAFLNRGLTISIEDKREEHK-----VRKDFHYEGG 217


>gi|148971291|gb|ABR20183.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 420

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 163/431 (37%), Positives = 242/431 (56%), Gaps = 17/431 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD  +Y++SGGLHGVG SVVNALS    V V R    + Q  ++G P 
Sbjct: 1   EVIMTVLHAGGKFDGGSYKVSGGLHGVGASVVNALSVRTRVEVKRNGFTWIQNCAKGHPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGD-KAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
             +EK  +   K GT+ TF+PD +IF D    +D   L    +  A+L+  +    + ++
Sbjct: 61  GAIEK-GEPTTKTGTKTTFKPDTEIFKDLSISYDFNTLANRFRELAFLNAGLYISLNDER 119

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
                    +K+EF +  G+  ++    +++  + +++   + E+       VE A  W 
Sbjct: 120 -------TGKKQEFQYANGIAEFVSYLNQSKKALHTDVVYFRGERDDV---EVEVAAQWN 169

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISA 366
           +     I SYCN I T EGGTH  G R A+TR    YA      + + +    +D+    
Sbjct: 170 DSYSESIFSYCNNINTIEGGTHLIGFRGAVTRTTNAYATEKNLLKDLKVSLEGEDIREGM 229

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIER 425
             ++SV +REP+F GQTKTKL + + +  VE+ + +    +  +NP  A +++ + V   
Sbjct: 230 AAVVSVKVREPQFEGQTKTKLGNNEVKGIVESLVNEKMADWFDRNPGPAKQIIGKCVEAA 289

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
                 R+ +    RKTA+    LPGK+ADC +      EL++VEGDSAGGSAKQAR+R 
Sbjct: 290 RAREAARKARELTRRKTALDGGTLPGKMADCQERDPALCELYLVEGDSAGGSAKQARDRR 349

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDA 544
            QAVLPL+GKILNV  A  +K+ +N++I  ++ ALG          E +RY K+IIMTDA
Sbjct: 350 TQAVLPLKGKILNVEKARFDKMLSNEEIRMMISALGTGIGKDQVSAEKIRYHKIIIMTDA 409

Query: 545 DVDGAHIASLL 555
           DVDG+HI +LL
Sbjct: 410 DVDGSHIRTLL 420


>gi|327335537|gb|AEA49947.1| DNA gyrase subunit B [Aeromonas hydrophila]
          Length = 416

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 168/428 (39%), Positives = 250/428 (58%), Gaps = 17/428 (3%)

Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184
             +S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +
Sbjct: 1   EGRSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTY 60

Query: 185 SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244
             G P +PL++        GT + F P P IF D   F    L K  +  ++L+  V   
Sbjct: 61  HLGEPQAPLKQIGDSAG-TGTEVRFWPSPTIFSDTL-FHYEILAKRLRELSFLNSGVSIR 118

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
              +++  E         F + GG+K +++   +N++ I  ++F   TE+ G     VE 
Sbjct: 119 LLDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEV 168

Query: 305 AIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDD 361
           A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      K   +   DD
Sbjct: 169 AMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDD 228

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
           +    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++NP +A  ++  
Sbjct: 229 VREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNK 288

Query: 422 VIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
           +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ
Sbjct: 289 IIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQ 348

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 349 GRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGRDEYNPDKLRYHNII 408

Query: 540 IMTDADVD 547
           IMTDADVD
Sbjct: 409 IMTDADVD 416


>gi|198250531|gb|ACH85247.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 156/415 (37%), Positives = 232/415 (55%), Gaps = 15/415 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKF    Y++SGGLHGVG+ VVNALS +L V V R+  +  Q++  G P   +++  
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVPVVNALSKKLEVQVKREGKVHQQEYRCGAPQYDIKEIG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +     GT++TF PD +IF +   +D   L    +  A+L+  ++   + ++        
Sbjct: 61  E-SEMTGTQVTFWPDEEIFTETTEYDFDTLQSRIRELAFLNKGIEIVLTDER-------T 112

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
              + F + GG+ ++++   +NR  +       + EK       VE A+ + +     I 
Sbjct: 113 DISQTFIYEGGIISFVEHLNQNREPVHQPPIYVEGEKDHIQ---VEVALQYNDSYTENIY 169

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
           S+ N I T EGGTHESG + ALTR + +YA       +   ++  DD+      I+SV I
Sbjct: 170 SFANNINTHEGGTHESGFKSALTRILNEYARKYNAIKESDANLSGDDVREGLTAIISVKI 229

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRR 433
            +P+F GQTKTKL + + +  VE+   +  + +L +NP  A K++E  V  +      R+
Sbjct: 230 PDPQFEGQTKTKLGNSEVRGIVESLFAEKLEEFLQENPAIAKKIVEKGVQAQRAREAARK 289

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            +    RK+A+    LPGKLADCS   A  +E++IVEGDSAGGSAKQ R+R  QA+LPLR
Sbjct: 290 ARELTRRKSALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLR 349

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           GKILNV  A  +KI +N +I  ++ ALG      +     RY K+IIMTDADVDG
Sbjct: 350 GKILNVEKARLDKILSNAEIRAIITALGTGIGEDFDISKARYHKIIIMTDADVDG 404


>gi|307939342|gb|ADN95862.1| DNA gyrase B [Hymenobacter chitinivorans]
          Length = 432

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 173/438 (39%), Positives = 251/438 (57%), Gaps = 21/438 (4%)

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           +I+T LHAGGKFD ++Y+ SGGLHGVG+S VNALS   HVTV R   I+ Q+++ G+P  
Sbjct: 1   LIMTVLHAGGKFDKNSYKTSGGLHGVGVSCVNALSTHTHVTVKRDGHIYEQEYTIGVPQY 60

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
            + +       RGT++ F+PDP IF +   +   R+    +  AYL+  ++   +  +  
Sbjct: 61  DVRQIGDTTE-RGTQVWFQPDPSIFDETLIYSYERIATRLRELAYLNRGIRIVLTDLRTP 119

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
           A+       E F+  GG+  Y+Q    NR+++ +      TE+       VE A  + + 
Sbjct: 120 ADGGEEQRDE-FFSEGGVAEYVQYLDANRTVLMTRPVYVSTER----GIPVEVAFQYNDS 174

Query: 312 NPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVG 368
             E   SY N I T EGGTH +G R A+TR +K YAE +    K  I I  DD       
Sbjct: 175 YQEHIFSYVNNINTHEGGTHVAGFRSAITRVLKAYAEKSGEVAKAKIEIQGDDFREGLTA 234

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           ++SV ++EP+F GQTK KL + +    V   + +  + YL +NP EA  ++E VI  ++ 
Sbjct: 235 VISVKVQEPKFEGQTKGKLGNSEVSGAVNQVVGEILNQYLEENPKEARVIVEKVILAAKA 294

Query: 429 RLRRRKQREVNRKTAIRKLRL-PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
           R+  +K RE+ ++  +      PGKLADCS++     EL++VEGDSAGG+AKQ RNR+ Q
Sbjct: 295 RVAAKKAREMVQRKTVLGSNSLPGKLADCSESDPELCELYLVEGDSAGGTAKQGRNRAFQ 354

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-----------EDLRYE 536
           A+LPLRGKILNV  A   +I  N++I +++ ALG     +  E           + LRY 
Sbjct: 355 AILPLRGKILNVEKAQEHRIYENEEIRNMITALGVSFEKKTDEDDGSSTRSLNLDKLRYH 414

Query: 537 KVIIMTDADVDGAHIASL 554
           KVIIMTDADVDG+HI +L
Sbjct: 415 KVIIMTDADVDGSHIRTL 432


>gi|119369982|gb|ABL68005.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 164/428 (38%), Positives = 233/428 (54%), Gaps = 13/428 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFDNS Y++SGGLHGVG+SVVNALS  L + + ++  +  Q + +G+P 
Sbjct: 1   EVIMTVLHAGGKFDNSLYKVSGGLHGVGVSVVNALSRRLELEIYQEGRLHRQVYHQGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL         RGT I F PD  I      F    L    +  A+L+  +         
Sbjct: 61  APLSVVG-TTALRGTSIRFWPDLSIMET-DTFLFDTLAHRFRELAFLNPILTIV------ 112

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
              +     +E F+F GG+K+Y +   EN+  I  E+   + E     +  V +      
Sbjct: 113 -LREEESLREETFHFEGGIKSYNEFLNENKKTIH-EVLFFRRELPSGAQFEVAFQYQETT 170

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
           +N  I  + N I T EGGTH  G R ALTR I ++ +  Q  +   +  +D+      ++
Sbjct: 171 DNETILGFANNIFTKEGGTHIKGFRTALTRVINRFIKDKQLNKGEELRGEDIREGLTAVV 230

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV I +P+F GQTK KL S      +E  L +       + P  A K+ +  I+ +  R 
Sbjct: 231 SVRIPDPQFEGQTKAKLGSSWVSGAMETFLAEEMQERFEEFPQIAKKIADKAIQTAMARE 290

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK +E   RK  +    LPGKLADC ++     EL+IVEGDSAGGSAKQ R R  QA+
Sbjct: 291 AARKAKELAKRKNVLEGSNLPGKLADCQESDPAKCELYIVEGDSAGGSAKQGRGRKFQAI 350

Query: 490 LPLRGKILNVASA-GSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVD 547
           LPL+GKILNV  A G+E+   + ++  L+ A+GC   ++   +  LRY K+IIMTDADVD
Sbjct: 351 LPLKGKILNVEKAGGAERFVTHDEVRALITAVGCGLGNEEYSQKNLRYHKIIIMTDADVD 410

Query: 548 GAHIASLL 555
           G+HI +LL
Sbjct: 411 GSHIRTLL 418


>gi|148470290|gb|ABQ66092.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  257 bits (657), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 164/428 (38%), Positives = 235/428 (54%), Gaps = 13/428 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFDNS Y++SGGLHGVG+SVVNALS  L + + ++  +  Q + +G+P+
Sbjct: 1   EVIMTVLHAGGKFDNSLYKVSGGLHGVGVSVVNALSQTLELEIHQEGKLHRQVYHQGVPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL         RGT I F PD  I      F    L    +  A+L+  +         
Sbjct: 61  APLAVVGTTT-LRGTSIRFWPDLSIMET-DTFLFDTLAHRFRELAFLNPILTIV------ 112

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
              +     +E F+F GG+K+Y +   EN+  I  E+   + E     +  V +      
Sbjct: 113 -LREEESLREETFHFEGGIKSYNEFLNENKKTIH-EVLFFRRELPTGAQFEVAFQYQETT 170

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
           +N  I  + N I T EGGTH  G R ALTR I ++ +  Q  +   +  +D+      ++
Sbjct: 171 DNETILGFANNIFTKEGGTHIKGFRTALTRVINRFIKDKQLNKGEELRGEDIREGLTAVV 230

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV I +P+F GQTK KL S      +E  L +       + P  A K+ +  I+ +  R 
Sbjct: 231 SVRIPDPQFEGQTKAKLGSSWVAGAMETFLAEEMQERFEEFPQIAKKIADKGIQTAMARE 290

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK +E   RK  +    LPGKLADC ++     EL+IVEGDSAGGSAKQ R+R  QA+
Sbjct: 291 AARKAKELAKRKNVLEGSNLPGKLADCQESDPAKCELYIVEGDSAGGSAKQGRDRKFQAI 350

Query: 490 LPLRGKILNVASA-GSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVD 547
           LPL+GKILNV  A G+E+   + ++  L+ A+GC   ++   +  LRY K+IIMTDADVD
Sbjct: 351 LPLKGKILNVEKAGGAERFVTHDEVRALITAVGCGLGNEEYSQKNLRYHKIIIMTDADVD 410

Query: 548 GAHIASLL 555
           G+HI +LL
Sbjct: 411 GSHIRTLL 418


>gi|307939338|gb|ADN95860.1| DNA gyrase B [Hymenobacter xinjiangensis]
          Length = 437

 Score =  257 bits (657), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 170/441 (38%), Positives = 243/441 (55%), Gaps = 21/441 (4%)

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           +I+T LHAGG FD  +Y++SGGLHGVG+S VNALS +L VTV R   ++ Q++  G P  
Sbjct: 1   LIMTVLHAGGXFDKDSYKVSGGLHGVGVSCVNALSKDLKVTVRRNGKVYQQEYKIGAPQY 60

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
           P+++  +     GT++ F PD  IF +   +  A +    +  AYL+  ++   +  +E 
Sbjct: 61  PVKEIGETEEH-GTQVEFLPDDTIFSESV-YKYATIASRLRELAYLNRGIRITLTDRREP 118

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
            E       EEF+  GGL  ++Q    +              +KG+    VE A+ + + 
Sbjct: 119 GENGAEFLGEEFFSTGGLSEFVQYLDGSERHALMPAPIHVISEKGST--PVEVALQYNDS 176

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVG 368
               I SY N I T EGGTH +G R ALTR +K YA+ +    K  + I  +D       
Sbjct: 177 YQENIFSYVNNINTHEGGTHVAGFRSALTRTLKAYADKSGKLEKAKVEISGEDFREGLTA 236

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSE 427
           ++SV ++EP+F GQTKTKL + +    V   + +    YL +NP EA  ++E VI     
Sbjct: 237 VISVKVQEPQFEGQTKTKLGNNEVSGAVNTVVGEILSQYLEENPKEAGIIVEKVILAAKA 296

Query: 428 ERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
               R+ +  V RK+ +    LPGKLADCS++     E+++VEGDSAGG+AKQ RNR+ Q
Sbjct: 297 RIAARKAREMVQRKSVLGSTSLPGKLADCSESDPEICEIYLVEGDSAGGTAKQGRNRAFQ 356

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY-------------REEDLR 534
           A+LPLRGKILNV  A   +I  N++I +++ ALG     Q                  LR
Sbjct: 357 AILPLRGKILNVEKAQEHRILENEEIRNMITALGVSFGVQADVEKGIEADAKALNTAKLR 416

Query: 535 YEKVIIMTDADVDGAHIASLL 555
           Y KVIIMTDADVDG+HI +LL
Sbjct: 417 YHKVIIMTDADVDGSHIRTLL 437


>gi|225551164|ref|ZP_03772110.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|225378979|gb|EEH01344.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
          Length = 270

 Score =  257 bits (657), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 101/245 (41%), Positives = 137/245 (55%), Gaps = 9/245 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ YD S+I+ILEGLE VR RPGMYIG T    LHHL  E++DN++DEV+   A  I V 
Sbjct: 2   ANKYDGSAIKILEGLEAVRKRPGMYIGSTSSAGLHHLVWEIVDNSIDEVMNANAKNISVV 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  ++++D+GRGIPV+ +P+    ST+E +LT LHAGGKFD S Y+ +GGLHGVG S
Sbjct: 62  LHEDNSISILDDGRGIPVDINPQ-TKISTVETVLTVLHAGGKFDESAYKTAGGLHGVGSS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  L   V R   I+  KFS G  +    K      K GT I F PDP IF +  
Sbjct: 121 VVNALSAWLICEVYRDQKIYQAKFSNGGHIDQPLKVIGTTKKTGTLIHFLPDPLIFKNLF 180

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F+   + +      +L   +K  +       E     +K EF    GL  +++   E +
Sbjct: 181 -FNPNTIKERLHESTFLIKDLKISF-------EDKINNKKYEFINDQGLIDFIKFINETK 232

Query: 281 SLISS 285
              S 
Sbjct: 233 KTFSD 237


>gi|29652665|gb|AAO87302.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652719|gb|AAO87329.1| DNA gyrase B [Listeria monocytogenes]
          Length = 209

 Score =  257 bits (657), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 93/205 (45%), Positives = 127/205 (61%), Gaps = 2/205 (0%)

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 7   RKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILN 66

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 67  VEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTL 126

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+K
Sbjct: 127 FYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYK 184

Query: 619 GLGEMLASQLKETAMDANKRTLLRV 643
           GLGEM   QL +T M+   RTLL+V
Sbjct: 185 GLGEMNPEQLWDTTMNPEHRTLLQV 209


>gi|27544672|dbj|BAC55031.1| DNA gyrase B subunit [Legionella spiritensis]
          Length = 300

 Score =  257 bits (657), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 108/312 (34%), Positives = 170/312 (54%), Gaps = 17/312 (5%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DNA+DE +AG+   I V +  +  +TV D+GRGIPV+ H +   
Sbjct: 1   DTDDGTGLHHMVFEVVDNAIDEALAGHCKEINVIIHVDESITVKDDGRGIPVDIHEE-EG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           +S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+ELH+T+ R N +  Q +  
Sbjct: 60  RSAAEVIMTILHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLTIRRNNKVHEQHYRN 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G+P +PL          GT++ F+P    F +   F    L +  +  ++L+  V     
Sbjct: 120 GVPDAPLAVTGDA-VATGTQVWFKPSANTFSN-IEFHYDILARRLRELSFLNSGVCIHLL 177

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
            ++         +++ F + GG+K +++    N++ I   +F+   EK      +VE ++
Sbjct: 178 DER-------TQKQDTFRYEGGIKAFVEHLNRNKTPIMPVVFSLNAEKDNI---SVELSM 227

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W +     I  + N I   +GGTH +G R ALTR +  Y E      K  I+   DD  
Sbjct: 228 QWNDSFQETIFCFTNNIPQRDGGTHLAGFRAALTRTLNTYIENEGFAKKAKITTTGDDAR 287

Query: 364 ISAVGILSVFIR 375
                +LSV + 
Sbjct: 288 EGLTAVLSVKVP 299


>gi|2196808|gb|AAB80821.1| DNA gyrase beta-subunit [Shewanella putrefaciens]
          Length = 419

 Score =  257 bits (657), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 164/430 (38%), Positives = 245/430 (56%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L +T+ R   ++ Q ++ G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLQMTIRRAGKVYEQFYTHGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+++        GT I F P    F D   F    L K  +  ++L+  V      +++
Sbjct: 61  APIKEIGDATK-TGTEIRFWPSEDTFSD-VEFHFEILAKRVRELSFLNSGVGIRLVDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + E F + GG+  ++      ++ ++ ++F    E++     TVE A+ W +
Sbjct: 119 -------DKNEFFKYEGGISAFVNYLKRRKTPVNKDVFHFMQERED--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                I  + N I   +GGTH  G R ALTR +  Y E      K   S   DD      
Sbjct: 170 GYQENIFCFTNNIPQRDGGTHLVGFRSALTRNLNSYMENEGYNKKGKTSATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            ++SV + +P+F+ QTK KLVS + +  VE  + +  + YL++NP EA  ++  ++E + 
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSSELKTAVEQTMGEKLNDYLLENPAEAKLIVGKIVEAAR 289

Query: 428 ERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R    K RE   RK A+    LPGKLADC +     +E+ IVEGDSAGGSAKQ RNR N
Sbjct: 290 AREAAGKVREKTRRKGALDLGGLPGKLADCQEKDPGLSEINIVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+ PL+GKILNV  A  +K+ ++Q++  L+ ALGC     +Y  +  RY  +IIMTDAD
Sbjct: 350 QAIPPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGADEYNPDKTRYHNIIIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHILTLL 419


>gi|119369900|gb|ABL67964.1| DNA gyrase subunit B [Acidithiobacillus ferrooxidans]
          Length = 418

 Score =  257 bits (657), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 159/430 (36%), Positives = 249/430 (57%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD++ Y++SGGLHGVG+SVVNALS+ L + + R   +++Q++  G P 
Sbjct: 1   EVIMTVLHAGGKFDDNAYKVSGGLHGVGVSVVNALSETLQLRIFRDGYVWTQEYHDGEPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+ +        G+ I F+P P++F D   F    + K  +  A+L+  V      ++ 
Sbjct: 61  APIAR-GDASRNHGSTIRFKPSPQVFADTH-FHFEIIAKRLRELAFLNSGVHITLLDERA 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       E F++ GG++ +++    +++ I   + T   E+ G     VE A+ W E
Sbjct: 119 SRE-------ETFHYEGGIRAFVEHLNRSKTAIHPSVITLTGERDGI---VVEAALQWNE 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR + +Y E      K  +++  +D      
Sbjct: 169 GYNEAVLCFTNNIPQADGGTHLAGFRGALTRTLNQYMEREGIIAKAKVAVSGEDAREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE+++ +    +L ++P EA  +   ++E + 
Sbjct: 229 AVLSVKVPDPKFSSQTKEKLVSSEVKPIVESSMSEALTMFLDEHPKEAQAIAAKIVEAAR 288

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   R+ RE   RK A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R +
Sbjct: 289 AREAARRARELTRRKGALDIANLPGKLADCQEKDPAQCEIYLVEGDSAGGSAKQGRDRRH 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +++ ++ +I  L+ ALG    +   +   LRY  VIIMTDAD
Sbjct: 349 QAILPLKGKILNVERARFDRMLSSDEIGTLITALGTGIGAGDFDVAKLRYHPVIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|183987566|gb|ACC65773.1| topoisomerase II [Pleurotus pulmonarius]
          Length = 692

 Score =  257 bits (657), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 116/547 (21%), Positives = 220/547 (40%), Gaps = 39/547 (7%)

Query: 154 LHGVGISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEK-VRNKRGTRITFR 210
            HG G  + N  S E  +  A       +SQ +++ +      K  K  RN+  TR+TF+
Sbjct: 1   RHGYGAKLANIYSLEFTIETADKVNGKKYSQTWTKNMTQVGKAKITKNSRNEEYTRVTFK 60

Query: 211 PDPKIFGDKAGFDAA--RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP-EKEEFYFPG 267
           P+   FG           L K     A  +  VK   + ++   + +    E        
Sbjct: 61  PELTRFGMTHIDPDTAGLLRKRVYDMAGTAKDVKVYLNDERLKIKTFRQYVEMYTEAATV 120

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEG 327
           G K       + +  +  E  +             E A A  +   +  S+ N+I T +G
Sbjct: 121 GAKENSGGAAQAKPTVIYEQIS----------PRWEVAFATSDGTFQQVSFANSISTIKG 170

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           GTH + +   L++ I  +       +A ++    +       ++  I  P F  QTK  L
Sbjct: 171 GTHVTYIADQLSKNIIAHIAKKN--KAATVKPAQVKNHMWIFVNALIENPTFDSQTKETL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRK 446
                +      L + F   + +     + +++ V+  ++ +  ++ ++   +++  +  
Sbjct: 229 TLPAGKFGSRPILSEEFMKKVQK-----SSVIDQVLNWAKFKADQQIKKTDGSKRNRLTG 283

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAG 503
           +       +     A    L + EGDSA   A        R N  V PLRGK+LNV  A 
Sbjct: 284 MAKLSDANNAGTKNAEKCTLILTEGDSAKSLAVAGLAVVGRDNFGVFPLRGKLLNVREAR 343

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
            ++I  N++I ++ + +G +   +Y     LRY +++IMTD D DG+HI  LL+ F    
Sbjct: 344 HDQIMKNEEIQNIKKIMGLQHNKEYTNVSSLRYGRLMIMTDQDHDGSHIKGLLINFLDHF 403

Query: 563 MYDLIEQK-HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
              L++    L     P+ R+T+G +          +  LEE       K     +KGLG
Sbjct: 404 YPSLLKVPEFLVEFVTPIVRVTKGNQRKNFFTIPEYETWLEETPDS--KKWSAKYYKGLG 461

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE--RAS 679
               +  +E      K  +    + ++  +L     + +K    KAD+R +++++    +
Sbjct: 462 TSSDADAREYFSQMGKHMIPFATMEEEERAL--IDLAFSK---KKADDRKEWLRQFKPGT 516

Query: 680 FID-DVG 685
           ++D ++ 
Sbjct: 517 YLDHNID 523


>gi|56409812|emb|CAH65715.1| DNA gyrase [Vibrio aestuarianus]
          Length = 421

 Score =  257 bits (657), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 164/430 (38%), Positives = 248/430 (57%), Gaps = 14/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LH GGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R+  IF Q +  G+P 
Sbjct: 1   EVIMTVLHXGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIKRKGEIFQQIYHHGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    K     GTRI F P  + F +   F    L K  +  + L+  V    + ++E
Sbjct: 61  APLAVIGKTEE-TGTRIRFWPSEETFTN-IEFHYEILAKRLRELSXLNSGVSIKLTDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + + F F GG++ +++    N++ I  +IF     ++     TVE A+ W +
Sbjct: 119 ------EDKSDHFMFEGGIRAFVEHLNRNKTPIHQKIFYFDHTRE-EDGITVEGAMQWND 171

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR +  + +      K   +   DD      
Sbjct: 172 GFQEGVYCFTNNIPQRDGGTHLAGFRGALTRTLNNFMDKEGYSKKAQAATSGDDAREGLT 231

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +L++NP EA  +   +I+   
Sbjct: 232 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMSEKLSEFLIENPTEAKIVCGKIIDAAR 291

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR N
Sbjct: 292 AREAARKARDMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKN 351

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++   + ALGC   R +Y  + LRY  +IIMTDA 
Sbjct: 352 QAILPLKGKILNVEKARFDKMLSSQEVATXITALGCGIGRDEYNPDKLRYHNIIIMTDAX 411

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 412 VDGSHIRTLL 421


>gi|148470286|gb|ABQ66090.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  257 bits (657), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 163/428 (38%), Positives = 234/428 (54%), Gaps = 13/428 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFDNS Y++SGGLHGVG+SVVNALS  L + + ++  +  Q + +G+P+
Sbjct: 1   EVIMTVLHAGGKFDNSLYKVSGGLHGVGVSVVNALSQTLELEIHQEGKLHRQVYHQGVPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL         RGT I F PD  I      F    L    +  A+L+  +         
Sbjct: 61  APLAVVGTTT-LRGTSIRFWPDLSIMET-DTFLFDTLAHRFRELAFLNPILTIV------ 112

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
              +     +E F+F GG+K+Y +   EN+  I  E+   + E     +  V +      
Sbjct: 113 -LREEESLREETFHFEGGIKSYNEFLNENKKTIH-EVLFFRRELPTGAQFEVAFQYQETT 170

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
           +N  I  + N I T EGGTH  G R ALTR I ++ +  Q  +   +  +D+      ++
Sbjct: 171 DNETILGFANNIFTKEGGTHIKGFRTALTRVINRFIKDKQLNKGEELRGEDIREGLTAVV 230

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV I +P+F GQTK KL S      +E  L +       + P  A K+ +  I+ +  R 
Sbjct: 231 SVRIPDPQFEGQTKAKLGSSWVAGAMETFLAEEMQERFEEFPQIAKKIADKGIQTAMARE 290

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK +E   RK  +    LPGKLADC ++     EL+IVEGDSAGGSAKQ R+R  QA+
Sbjct: 291 AARKAKELAKRKNVLEGSNLPGKLADCQESDPAKCELYIVEGDSAGGSAKQGRDRKFQAI 350

Query: 490 LPLRGKILNVASA-GSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVD 547
            PL+GKILNV  A G+E+   + ++  L+ A+GC   ++   +  LRY K+IIMTDADVD
Sbjct: 351 SPLKGKILNVEKAGGAERFVTHDEVRALITAVGCGLGNEEYSQKNLRYHKIIIMTDADVD 410

Query: 548 GAHIASLL 555
           G+HI +LL
Sbjct: 411 GSHIRTLL 418


>gi|29652946|gb|AAO87442.1| DNA gyrase B [Listeria monocytogenes]
          Length = 210

 Score =  257 bits (657), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 93/205 (45%), Positives = 127/205 (61%), Gaps = 2/205 (0%)

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 8   RKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILN 67

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 68  VEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTL 127

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+K
Sbjct: 128 FYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYK 185

Query: 619 GLGEMLASQLKETAMDANKRTLLRV 643
           GLGEM   QL +T M+   RTLL+V
Sbjct: 186 GLGEMNPEQLWDTTMNPEHRTLLQV 210


>gi|183987564|gb|ACC65772.1| topoisomerase II [Pleurotus abalonus]
          Length = 692

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 114/542 (21%), Positives = 219/542 (40%), Gaps = 36/542 (6%)

Query: 154 LHGVGISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEK-VRNKRGTRITFR 210
            HG G  + N  S E  +  A       +SQ +++ +      K  K  R +  TR+TF+
Sbjct: 1   RHGYGAKLANIYSLEFMIETADKTSEKKYSQTWTKNMSQVGKAKITKNSRGEEYTRVTFK 60

Query: 211 PDPKIFGDKA--GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           PD   FG +      A+ L K     A  +  VK   + ++    K    ++    +   
Sbjct: 61  PDLPRFGMQYIDADTASLLRKRVYDMAGTAKDVKVYLNDERL---KIKNFKQCVEMYLDA 117

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGG 328
                +      +     +   +           E A A  +  P+  S+ N+I T +GG
Sbjct: 118 AAADAKENSGGAAQAKPTVIYEQIS------PRWEVAFATSDGTPQHVSFANSISTIKGG 171

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           TH + +   + +     A +T+  +  ++    +       ++  I  P F  QTK  L 
Sbjct: 172 THVTYIADQIAK--NLIAAITKKNKGATVKPAQIRNHMWIFVNSLIENPTFDSQTKETLT 229

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKL 447
              ++   + +L + F   + +     + ++E V+  ++ +  ++ ++   +++  +   
Sbjct: 230 LPASKFGSKPSLSEEFMKKVQK-----SSIIEQVLNWAKFKADQQIKKTDGSKRNRLTGT 284

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGS 504
                  +     A    L + EGDSA   A        R N  V PLRGK+LNV  A  
Sbjct: 285 AKLSDANNAGTKHAEKCTLILTEGDSAKSLAVAGLAVVGRDNFGVFPLRGKLLNVREAKH 344

Query: 505 EKIRNNQQIMDLVQALGCRTRSQY-REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           ++I  N++I ++ + +G +   +Y     LRY +++IMTD D DG+HI  LL+ F     
Sbjct: 345 DQIMKNEEIQNIKKIMGLQHNKEYANIPSLRYGRLMIMTDQDHDGSHIKGLLINFLDHFF 404

Query: 564 YDLIEQK-HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
             L++    L     P+ R+T+G +          ++ LE        K     +KGLG 
Sbjct: 405 PSLLKIPEFLVEFVTPIVRVTKGNQHRNFFTIPEYERWLEATPDS--KKWTAKYYKGLGT 462

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE--RASF 680
              +  +E     +K  +    + +    L     + +K    KAD+R  ++++    ++
Sbjct: 463 SSDADAREYFGRMSKHMIPFATMEEGDRDL--IDLAFSK---KKADDRKDWLRQFKPGTY 517

Query: 681 ID 682
           +D
Sbjct: 518 LD 519


>gi|34786913|emb|CAE46957.1| DNA gyrase [Vibrio aestuarianus]
          Length = 421

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 162/430 (37%), Positives = 246/430 (57%), Gaps = 14/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LH GGKFD++ Y++SGGLHGVG+S VNALS+++ +T+ R+  IF Q +  G+P 
Sbjct: 1   EVIMTVLHDGGKFDDNAYKVSGGLHGVGVSXVNALSEKVELTIKRKGEIFQQIYHHGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    K     GTRI F    + F +   F    L K  +  ++L+  V    + ++E
Sbjct: 61  APLAVIGKTEE-TGTRIRFWXSEETFTN-IEFHYEILAKRLRELSFLNSGVSIKLTDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + + F F GG++ +++    N++ I  +IF     ++     T E A+ W +
Sbjct: 119 ------EDKSDHFMFEGGIRAFVEHLNRNKTPIHQKIFYFDHTRE-EDGITXEVAMQWND 171

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR +  + +      K   +   DD      
Sbjct: 172 GFQEGVYCFTNNIPQRDGGTHLAGFRGALTRTLNNFMDKEGYSKKAQAATSGDDAREGLT 231

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +L++NP EA  +   +I+   
Sbjct: 232 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMSEKLSEFLIENPTEAKIVCGKIIDAAR 291

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR N
Sbjct: 292 AREAARKARDMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKN 351

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIM DAD
Sbjct: 352 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMADAD 411

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 412 VDGSHIRTLL 421


>gi|119221383|gb|ABL61895.1| GyrB [uncultured bacterium]
          Length = 417

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 159/429 (37%), Positives = 250/429 (58%), Gaps = 17/429 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD++ Y++SGGLHGVG+SVVNALS+ L + + R   +++Q++  G P 
Sbjct: 1   EVIMTVLHAGGKFDDNAYKVSGGLHGVGVSVVNALSETLQLRIFRDGYVWTQEYHDGEPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+ +      K G+ I F+P P++F D   F    + K  +  A+L+  V      ++ 
Sbjct: 61  APIAR-GDASRKHGSTIRFKPSPQVFADTH-FHFEIIAKRLRELAFLNSGVHITLLDERA 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       E F++ GG++ +++    +++ I   + T   E+ G     VE A+ W E
Sbjct: 119 SRE-------ETFHYEGGIRAFVEHLNRSKTAIHPSVITLTGERDGI---VVEAALQWNE 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR + +Y E      K  +++  +D      
Sbjct: 169 GYNEAVLCFTNNIPQADGGTHLAGFRGALTRTLNQYMEREGIIAKAKVAVSGEDAREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE+++ +    +L ++P EA  +   ++E + 
Sbjct: 229 AVLSVKVPDPKFSSQTKEKLVSSEVKPIVESSMSEALTMFLDEHPKEAQAIAAKIVEAAR 288

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   R+ RE   RK A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R +
Sbjct: 289 AREAARRARELTRRKGALDIANLPGKLADCQEKDPAQCEIYLVEGDSAGGSAKQGRDRRH 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +++ ++ +I  L+ ALG    +   +   LRY +VIIMTDAD
Sbjct: 349 QAILPLKGKILNVERARFDRMLSSDEIGTLITALGTGIGAGDFDVAKLRYHRVIIMTDAD 408

Query: 546 VDGAHIASL 554
           VDG+HI +L
Sbjct: 409 VDGSHIRTL 417


>gi|253826364|gb|ACT36485.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  257 bits (656), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 156/415 (37%), Positives = 233/415 (56%), Gaps = 15/415 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKF    Y++SGGLHGVG+SVVNALS +L V V R+  ++ Q++  G P   +++  
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSKKLEVQVKREGKVYQQEYRCGAPQYDIKEIG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +     GT++TF PD +IF +   +D   L    +  A+L+  ++   + ++        
Sbjct: 61  E-SEMTGTQVTFWPDEEIFTETTEYDFDTLQSRIRELAFLNKGIEIVLTDER-------T 112

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
              + F + GG+ ++++   +NR  +       + EK       VE A+ + +     I 
Sbjct: 113 DISQTFIYEGGIISFVEHLNQNREPVHQPPIYVEGEKDHIQ---VEVALQYNDSYTENIY 169

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
           S+ N I T EGGTHESG + ALTR + +YA       +   ++  DD+      I+SV I
Sbjct: 170 SFANNINTHEGGTHESGFKSALTRILNEYARKYNAIKESDANLSGDDVREGLTAIISVKI 229

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRR 433
            +P+F GQTKTKL + + +  VE+   +  + +L +NP  A K++E  V  +      R+
Sbjct: 230 PDPQFEGQTKTKLGNSEVRGIVESLFAEKLEEFLQENPAIAKKIVEKGVQAQRAREAARK 289

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            +    RK+A+    LPGKLADCS   A  +E++IVEGDSAGGSAKQ R+R  QA+LP R
Sbjct: 290 ARELTRRKSALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPQR 349

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           GKILNV  A  +KI +N +I  ++ ALG      +     RY K+IIMTDADVDG
Sbjct: 350 GKILNVEKARLDKILSNAEIRAIITALGTGIGEDFDISKARYHKIIIMTDADVDG 404


>gi|261883807|ref|ZP_06007846.1| DNA gyrase subunit B [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 247

 Score =  257 bits (656), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 98/203 (48%), Positives = 130/203 (64%), Gaps = 3/203 (1%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           ++   NY A +I++L+GLE VR RPGMYIG T+   LHH+  EV+DN++DE +AGY + I
Sbjct: 2   ENLEKNYGAGNIKVLKGLEAVRKRPGMYIGDTNISGLHHMIYEVVDNSIDESMAGYCDTI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            + L   G   V DNGRGIPV+ HP     S   ++LT LHAGGKFD  TY++SGGLHGV
Sbjct: 62  NIELTREGSCIVTDNGRGIPVDIHP-TEKISAATVVLTVLHAGGKFDKDTYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS +L + + R   ++ Q+FS+GIP + LE   K  N+ GT + F PD  IF 
Sbjct: 121 GVSVVNALSKKLILNIKRDGNLYRQEFSKGIPQNILEAV-KTTNRTGTSVEFWPDDDIFE 179

Query: 218 DKAGFDAARLLKMTQSKAYLSGR 240
               FD   LLK  +  AY   +
Sbjct: 180 V-TEFDKQILLKRFKELAYFKSQ 201


>gi|2905602|gb|AAC03526.1| gyrase subunit B [Shewanella putrefaciens]
          Length = 419

 Score =  257 bits (656), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 161/430 (37%), Positives = 243/430 (56%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L +T+ R   ++ Q ++ G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSRKLQMTIRRAGKVYEQFYTHGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+++        GT I F P    F D   F    L K  +  ++L+  V      +++
Sbjct: 61  APIKEIGDATK-TGTEIRFWPSEDTFSD-VEFHFEILAKRVRELSFLNSGVGIRLIDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + E F + GG+  ++     N++ ++ E+F    E+      TVE A+ W +
Sbjct: 119 N-------KNEFFKYEGGINAFVDYLNRNKTPVNKEVFHFMQERDD--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                I  + N I   +GGTH  G R ALTR +  Y E      K   +   DD      
Sbjct: 170 GYQENIFCFTNNIPQRDGGTHLVGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +  + YL++NP +A  ++  +++   
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEKLNDYLLENPADAKLIVGKIVDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A     LPGKLADC +     +E++IVEGD AGGSAKQ RNR N
Sbjct: 290 AREAARKAREMTRRKGAFDLGGLPGKLADCQEKDPGLSEIYIVEGDFAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+  +Q++  L+ ALGC   R +Y  +  RY  +IIMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLFSQEVATLITALGCGIGRDEYNPDKTRYHNIIIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHILTLL 419


>gi|183987574|gb|ACC65777.1| topoisomerase II [Pleurotus tuber-regium]
          Length = 692

 Score =  257 bits (656), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 113/546 (20%), Positives = 221/546 (40%), Gaps = 37/546 (6%)

Query: 154 LHGVGISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEK-VRNKRGTRITFR 210
            +G G  + N  S E  +  A       +SQ +++ +      K  K  R +  TR+TF+
Sbjct: 1   RNGYGAKLANIYSLEFTIETADKINEKKYSQTWTKNMTQVGKAKITKNSRGEEYTRVTFK 60

Query: 211 PDPKIFGDKA--GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           PD   FG        A+ L K     A     VK   + ++    K    ++    +   
Sbjct: 61  PDLARFGMSHIDTDTASLLRKRVYDLAGTVKDVKVYLNDERL---KVKDFKQYVEMYLDA 117

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGG 328
                +      +     +   +        G  E A A  +   +  S+ N+I T +GG
Sbjct: 118 AAADAKENSGGAAQAKPTLIYEQIS------GRWEVAFATSDGTFQQVSFANSISTIKGG 171

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           TH + +   L++     A +T+  +  ++    +       ++  I  P    QTK  L 
Sbjct: 172 THVNYIADQLSK--NLIAAITKKNKGATVKPAQIKNHMWIFVNSLIENPTSDSQTKETLT 229

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKL 447
              ++   +  L + F   + +     + +++ V+  ++ +  ++ ++   +++  +  +
Sbjct: 230 LPASKFGSKPTLSEEFLKKVQK-----SSIIDQVLNWAKFKADQQIKKTDGSKRNRLTGM 284

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGS 504
                  +     A    L + EGDSA   A        R N  V PLRGK+LNV  A  
Sbjct: 285 AKLSDANNAGTKQAEKCTLILTEGDSAKSLAVAGLAVVGRDNFGVFPLRGKLLNVREAKH 344

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           ++I  N++I ++ + +G +   +Y     LRY +++IMTD D DG+HI  LL+ F     
Sbjct: 345 DQIMKNEEIQNIKKIMGLQHNKEYTNVSSLRYGRLMIMTDQDHDGSHIKGLLINFLDHFY 404

Query: 564 YDLIEQK-HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
             L++    L     P+ R+T+G +          +K LEE       K     +KGLG 
Sbjct: 405 PSLLKIPEFLVEFVTPIVRVTKGNQRKNFFTIPEYEKWLEETPDS--KKWTAKYYKGLGT 462

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ--ERASF 680
              +  +E     +K  +    + +     +    + +K    KAD+R ++++  +  ++
Sbjct: 463 SSDADAREYFSHMSKHMIPFATMEEGER--ELIDLAFSK---KKADDRKEWLRHFKPGTY 517

Query: 681 ID-DVG 685
           +D ++ 
Sbjct: 518 LDHNMD 523


>gi|119369944|gb|ABL67986.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 420

 Score =  257 bits (656), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 157/430 (36%), Positives = 251/430 (58%), Gaps = 15/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+  ++ Q++  G P+
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSTKLTLAIRREGELWEQEYHCGDPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+  K   +  RGT + F PDP++F     F  ARL K  +  AYL+  +    + ++ 
Sbjct: 61  APIAAKGPAKG-RGTTVHFWPDPEVFES-TEFSFARLEKRFRELAYLNDGLTILLNDERG 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             ++ G+     +++ GG+  ++    ++R  +   +   K ++ G     V+ AI W +
Sbjct: 119 DRKREGV-----YHYEGGVAAFVLDINKSREAVHPTVIRIKGDRDGVM---VDTAIQWND 170

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R A+TR +  Y E      K  ++I + D+     
Sbjct: 171 GYNESVFPFTNNIPQVDGGTHLTGFRSAMTRVLGGYMEREGIATKAKVTIDAADMREGMT 230

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE+ + +    +L + P EA  +   ++E ++
Sbjct: 231 AVLSVKVPDPKFSSQTKDKLVSSEVRPIVESVIAEGVGTFLDEKPKEAQAICAKIVEAAK 290

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK R+   RK A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R  
Sbjct: 291 AREAARKARDLTRRKGALDIANLPGKLADCQEKDPALCEIYLVEGDSAGGSAKQGRDRKF 350

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDAD 545
           QA+LP++GKILNV  A  +++  + +I  L+ ALG            LRY ++II+TDAD
Sbjct: 351 QAILPVKGKILNVERARFDRMLESDEIGTLITALGTGIGQDEFNAGKLRYHRIIIITDAD 410

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 411 VDGSHIRTLL 420


>gi|33187275|gb|AAP97500.1| DNA gyrase subunit B [Campylobacter jejuni]
          Length = 407

 Score =  257 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 168/421 (39%), Positives = 235/421 (55%), Gaps = 18/421 (4%)

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           LT LHAGGKFD  TY++SGGLHGVG+SVVNALS +L  TV R   I+ Q+FS G  +S  
Sbjct: 1   LTVLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEF 60

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
               K +   GT I F PD +IF     FD   L K  +  AYL+ ++   +  ++    
Sbjct: 61  GVIGKSKK-TGTTIEFWPDDQIFEVT-EFDYEILAKRFRELAYLNPKITINFKDNR---- 114

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP 313
              + + E F+F GG+  ++    +  +L  +  F+   E        VE A+ + +   
Sbjct: 115 ---VGKHESFHFEGGISQFVIDLNKKEALTKAIFFSVDEED-----VNVEVALLYNDTYS 166

Query: 314 EIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
           E   S+ N I T +GGTHE+G R+ LTR I  Y E      ++   I  +D+    + ++
Sbjct: 167 ENLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGEDVREGLIAVV 226

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV + EP+F GQTK KL S   +  V  A  +    Y  +NPIEA  ++   +  +  R 
Sbjct: 227 SVKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGRE 286

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             +K RE   +K ++    LPGKLADC       +E+++VEGDSAGGSAKQ R RS QA+
Sbjct: 287 AAKKARELTRKKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAI 346

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549
           LPLRGKILNV  A  +KI  ++QI +++ A GC     +    LRY K+IIMTDADVDG+
Sbjct: 347 LPLRGKILNVEKARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDGS 406

Query: 550 H 550
           H
Sbjct: 407 H 407


>gi|148616438|gb|ABQ96962.1| GyrB [Nocardiopsis aegyptia]
          Length = 424

 Score =  257 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 152/430 (35%), Positives = 233/430 (54%), Gaps = 10/430 (2%)

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
           +E+I+T LHAGGKFD  +Y +SGGLHGVG+SVVNALS  L V + +   ++ Q +    P
Sbjct: 1   IEVIMTVLHAGGKFDGKSYAVSGGLHGVGVSVVNALSTALDVEIRKDGHVWRQHYEMTAP 60

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
              L K  +  ++ GT+ITF  D  IF     +    L +  Q  A+L+  +      ++
Sbjct: 61  TGELVK-GEATDETGTQITFWADGSIFETTV-YTFETLARRMQEMAFLNKGLSITIRDER 118

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
                 G P    F++  GL  Y++     +    + I + + +  G    + E A+ W 
Sbjct: 119 -PEHTDGGPTVNTFHYDEGLADYVRHINTKKEPAHASIISFEEDGDGI---SAEIAMQWN 174

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISA 366
           +     + ++ NTI T EGGTHE G   ALT  + +YA   +   +R  ++  DD+    
Sbjct: 175 QSYTSSVHTFANTINTAEGGTHEEGFHSALTTLVNRYARDQKLLREREENLTGDDIREGL 234

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIER 425
             I+S+ + +P+F GQTKTKL + +A+  V+    +    +  +NP EA  ++ +     
Sbjct: 235 TAIISIKLADPQFEGQTKTKLGNTEAKSFVQKVTNEHLRDWFERNPGEAKDIVSKASQAA 294

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
                 R+ +    R+T +    LPGKL+DC        E++IVEGDSAGGSAK  RN  
Sbjct: 295 RARVAARQARDLTRRRTLLESTSLPGKLSDCQSTNPEECEVYIVEGDSAGGSAKGGRNPH 354

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545
           NQA+LP+RGKILNV  +  ++I  N ++  ++ ALG     ++  + LRY KVI+MTDAD
Sbjct: 355 NQAILPIRGKILNVEKSRIDRILKNNEVQAIITALGTGIHEEFDADKLRYHKVILMTDAD 414

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 415 VDGSHIRTLL 424


>gi|253826358|gb|ACT36482.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  257 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 156/415 (37%), Positives = 233/415 (56%), Gaps = 15/415 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKF    Y++SGGLHGVG+SVVNALS +L V V R+  ++ Q++  G P   +++  
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSKKLEVQVKREGKVYQQEYRCGAPQYDIKEIG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +     GT++TF PD +IF +   +D   L    +  A+L+  ++   + ++    +   
Sbjct: 61  E-SEMTGTQVTFWPDEEIFTETTEYDFDTLQSRIRELAFLNKGIEIVLTDERTDISRT-- 117

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
                F + GG+ ++++   +NR  +       + +K       VE A+ + +     I 
Sbjct: 118 -----FIYEGGIISFVEHLNQNREPVHQPPIYVEGKKDHIQ---VEVALQYNDSYTENIY 169

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
           S+ N I T EGGTHESG + ALTR + +YA       +   ++  DD+      I+SV I
Sbjct: 170 SFANNINTHEGGTHESGFKSALTRILNEYARKYNAIKESDANLSGDDVSEGLTAIISVKI 229

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRR 433
            +P+F GQTKTKL + + +  VE+   +  + +L +NP  A K++E  V  +      R+
Sbjct: 230 PDPQFEGQTKTKLGNSEVRGIVESLFAEKLEEFLQENPAIAKKIVEKGVQAQRAREAARK 289

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            +    R++A+    LPGKLADCS   A  +E +IVEGDSAGGSAKQ RNR  QA+LPLR
Sbjct: 290 ARELTRRRSALEVSSLPGKLADCSSKDASISEAYIVEGDSAGGSAKQGRNRHFQAILPLR 349

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           GKILNV  A  +KI +N +I  ++ ALG      +     RY K+IIMTDADVDG
Sbjct: 350 GKILNVEKARLDKILSNAEIRAIITALGTGIGEDFDISKARYHKIIIMTDADVDG 404


>gi|262272994|gb|ACY40692.1| DNA gyrase subunit beta [Xanthomonas campestris pv.
           mangiferaeindicae]
          Length = 419

 Score =  257 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 163/430 (37%), Positives = 246/430 (57%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+ L + + R    + Q+++ G P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            PL++ E      GT + F+P   IF D   F    L +  +  ++L+  VK     ++ 
Sbjct: 61  YPLKQLEASTKC-GTTLRFKPSVAIFSD-VEFHYDILARRLRELSFLNSGVKITLIDERG 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                    +++F++ GG++++++   + +S +   + +   E  G     V+ A+ W +
Sbjct: 119 ------EGRRDDFHYEGGIRSFVEHLAQLKSPLHPNVISVTGEHNGIM---VDVALQWTD 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR +  Y E     +   +    DD+    +
Sbjct: 170 AYQETMYCFTNNIPQKDGGTHLAGFRAALTRVLSTYIEQNGIAKQAKVALTGDDMREGMI 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            +LSV + +P F+ QTK KLVS D +  VENA       +L +NP EA  +   +++   
Sbjct: 230 AVLSVKVPDPSFSSQTKEKLVSSDVRPAVENAFGARLQEFLQENPNEAKAITGKIVDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARKARDLTRRKGALDIAGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QAVLPLRGKILNV  A  +++  + Q+  L+ ALG    R +Y  + LRY ++I+MTDAD
Sbjct: 350 QAVLPLRGKILNVERARFDRMLASDQVGTLITALGTGIGRDEYNPDKLRYHRIILMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHIRTLL 419


>gi|148470203|gb|ABQ66049.1| gyrase b [uncultured bacterium]
 gi|148971401|gb|ABR20238.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  257 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 161/428 (37%), Positives = 231/428 (53%), Gaps = 13/428 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFDN+TY++SGGLHGVG+SVVNALS+ L + + ++   F Q + +G P 
Sbjct: 1   EVIMTVLHAGGKFDNNTYKVSGGLHGVGVSVVNALSETLLLEIDQKGKHFKQTYHKGEPE 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL       +K GT I F PD  I      F    L    +   YL+  +    + ++ 
Sbjct: 61  APLSIAGD-SDKTGTTIRFYPDMSIMET-DEFSFDVLAHRFRELGYLNPALTIVLTEEET 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
           + E         F+  GG++++L    EN+  I   +F  KT + G+    V +      
Sbjct: 119 LRETV-------FHDEGGIRSFLVFLNENKRTIHETLFFRKTFENGSI-FEVSFQYQDTT 170

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
           +   + SY N I T EGG+H  G R ALTR + ++       +   +  +D+      I+
Sbjct: 171 DAETLLSYVNNIPTREGGSHVKGFRSALTRVVNRFIRDKNLNKGEEVRGEDIREGLSAII 230

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           S+ I  P+F GQTK KL S      +E+ L +  +    +    A  + +  I  ++ R 
Sbjct: 231 SIKIPNPQFEGQTKAKLGSSWVAGAMESFLAESLEDAFEKQGAVARAIADKAILSAQARE 290

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK RE   RK  +    LPGKLADC +N    +EL+IVEGDSAGGSAKQ R+R  QA+
Sbjct: 291 AARKARELTKRKNVLEGSNLPGKLADCQENDPAKSELYIVEGDSAGGSAKQGRDRKFQAI 350

Query: 490 LPLRGKILNVASAG-SEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVD 547
           LPL+GKILNV      EK   + ++  L+ A+GC    +      LRY K+IIMTDADVD
Sbjct: 351 LPLKGKILNVEKTKGIEKFITHDEVRALITAVGCGLGEEDFSLKNLRYHKIIIMTDADVD 410

Query: 548 GAHIASLL 555
           G+HI +LL
Sbjct: 411 GSHIRTLL 418


>gi|307939344|gb|ADN95863.1| DNA gyrase B [Hymenobacter norwichensis]
          Length = 433

 Score =  257 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 173/438 (39%), Positives = 252/438 (57%), Gaps = 20/438 (4%)

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           +I+T LHAGGKFD ++Y+ SGGLHGVG+S VNALS   HVTV R   I+ Q++  GIP  
Sbjct: 1   LIMTVLHAGGKFDKNSYKTSGGLHGVGVSCVNALSTHTHVTVKRDGHIYEQEYVIGIPQY 60

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
            + +       RGTR+ F+PD  IF +   +   R+    +  +YL+  V+   +  +E 
Sbjct: 61  DVRQVGDTTE-RGTRVMFQPDATIFDETTEYSFERIASRLRELSYLNRGVRILLTDLREA 119

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
            E       EEF+  GGL  Y+Q    +R+++ ++     TE+       VE A  + + 
Sbjct: 120 DENGEGAVSEEFFSEGGLAEYVQYLDNSRTVLMTKPVYVATER----GIPVEVAFQYNDS 175

Query: 312 NPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVG 368
             E   SY N I T EGGTH +G R A+TR +K YAE +    K  + I  DD       
Sbjct: 176 YQEHIFSYVNNINTHEGGTHVAGFRSAITRVLKAYAEKSGEVAKAKVEIQGDDFREGLTA 235

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           I+SV ++EP+F GQTK KL + +    V   + +  + YL +NP EA  +++ VI  ++ 
Sbjct: 236 IISVKVQEPKFEGQTKGKLGNSEVSGAVNQVVGEILNQYLEENPKEARVIVDKVILAAKA 295

Query: 429 RLRRRKQREVNRKTAIRKLRL-PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
           R+  +K RE+ ++ ++      PGKLADCS++     EL++VEGDSAGG+AKQ RNR+ Q
Sbjct: 296 RVAAKKAREMVQRKSVLGSNSLPGKLADCSESDPSICELYLVEGDSAGGTAKQGRNRAFQ 355

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-----------EDLRYE 536
           A+LPLRGKILNV  A   +I  N++I +++ ALG    ++  +           + LRY 
Sbjct: 356 AILPLRGKILNVEKAQEHRIYENEEIRNMITALGVSFETRTDDEDGSSSRFLNLDKLRYH 415

Query: 537 KVIIMTDADVDGAHIASL 554
           KVIIMTDA VDG+HI +L
Sbjct: 416 KVIIMTDAXVDGSHIRTL 433


>gi|253826354|gb|ACT36480.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  257 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 156/415 (37%), Positives = 233/415 (56%), Gaps = 15/415 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKF    Y++SG LHGVG+SVVNALS +L V V R+  ++ Q++  G P   +++  
Sbjct: 1   HAGGKFGGEGYKVSGSLHGVGVSVVNALSKKLEVQVKREGKVYQQEYRCGAPQYDIKEIG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +     GT++TF PD +IF +   +D   L    +  A+L+  ++   + ++        
Sbjct: 61  E-SEMTGTQVTFWPDEEIFTETTEYDFDTLQSRIRELAFLNKGIEIVLTDER-------T 112

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
              + F + GG+ ++++   +NR  +       + EK       VE A+ + +     I 
Sbjct: 113 DISQTFVYEGGIISFVEHLNQNREPVHQPPIYVEGEKDHIQ---VEVALQYNDSYTENIY 169

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
           S+ N I T EGGTHESG + ALTR + +YA       +   ++  DD+      I+SV I
Sbjct: 170 SFANNINTHEGGTHESGFKSALTRILNEYARKYNAIKESDANLSGDDVREGLTAIISVKI 229

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRR 433
            +P+F GQTKTKL + + +  VE+   +  + +L +NP  A K++E  V  +      R+
Sbjct: 230 PDPQFEGQTKTKLGNSEVRGIVESLFAEKLEEFLQENPAIAKKIVEKGVQAQRAREAARK 289

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            +    RK+A+    LPGKLADCS   A  +E++IVEGDSAGGSAKQ R+R  QA+LPLR
Sbjct: 290 ARELTRRKSALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLR 349

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           GKILNV  A  +KI +N +I  ++ ALG      +     RY K+IIMTDADVDG
Sbjct: 350 GKILNVEKARLDKILSNAEIRAIITALGTGIGEDFDISKARYHKIIIMTDADVDG 404


>gi|199599919|gb|ACH91037.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  257 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 156/415 (37%), Positives = 234/415 (56%), Gaps = 15/415 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKF    Y++SGGLHGVG+SVVNALS +L V V R+  ++ Q++  G P   +++  
Sbjct: 1   HAGGKFGGEDYKVSGGLHGVGVSVVNALSKKLEVQVKREGKVYQQEYRCGAPQYDIKEIG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +     GT++TF PD +IF +   +D   L    +  A+L+  ++   + ++        
Sbjct: 61  E-SEMTGTQVTFWPDEEIFTETTEYDFDTLQSRIRELAFLNKGIEIVLTDER-------T 112

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
              + F + GG+ ++++   +NR  +       + EK       VE A+ + +     I 
Sbjct: 113 DISQTFIYEGGIISFVEHLNQNREPVHQPPIYVEGEKDHIQ---VEVALQYNDSYTENIY 169

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
           S+ N I T EGGTHESG + ALTR + +YA       +   ++  DD+      I+SV I
Sbjct: 170 SFANNINTHEGGTHESGFKSALTRILNEYARKYNAIKESDANLSGDDVREGLTAIISVKI 229

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRR 433
            +P+F GQTKTKL + + +  VE+   +  + +L ++P  A K++E  V  +      R+
Sbjct: 230 PDPQFEGQTKTKLGNSEVRGIVESLFAEKLEEFLQESPAIAKKIVEKGVQAQRAREAARK 289

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            +    RK+A+    LPGKLADCS   A  +E++IVEGDSAGGSAKQ R+R  QA+LPLR
Sbjct: 290 ARELTRRKSALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLR 349

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           GKILNV  A  +KI +N +I  ++ ALG      +     RY K+IIMTDADVDG
Sbjct: 350 GKILNVEKARLDKILSNAEIRAIITALGTGIGEDFDISKARYHKIIIMTDADVDG 404


>gi|29652753|gb|AAO87346.1| DNA gyrase B [Listeria monocytogenes]
          Length = 202

 Score =  257 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 93/204 (45%), Positives = 127/204 (62%), Gaps = 2/204 (0%)

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV
Sbjct: 1   KSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNV 60

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
             A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT F
Sbjct: 61  EKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLF 120

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
           Y+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+KG
Sbjct: 121 YRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYKG 178

Query: 620 LGEMLASQLKETAMDANKRTLLRV 643
           LGEM   QL +T M+   RTLL+V
Sbjct: 179 LGEMNPEQLWDTTMNPEHRTLLQV 202


>gi|119369958|gb|ABL67993.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  257 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 165/430 (38%), Positives = 246/430 (57%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGG+FD+++Y+ISGGLHGVG+SVVNALS  L +T+ R       +F  G P+
Sbjct: 1   EVIMTVLHAGGEFDSNSYKISGGLHGVGVSVVNALSTWLKMTIYRDGKRHFMEFREGDPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL      +   GT I F P P+ FG    F    L +  +  ++L+  V       + 
Sbjct: 61  APLAVVGDSQK-NGTEIHFLPSPETFGV-IEFHYDILARRLRELSFLNNGVSILLKDLRH 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       E F F GG++ +++     R+++   +F    EK+G     VE A+ W E
Sbjct: 119 GHE-------ENFSFSGGVRGFVEYLNRTRTVLHPTVFHSVGEKEGI---AVEVAMQWNE 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH + LR A+TR + +  E  +   K  +    DD+     
Sbjct: 169 SYQENVLCFTNNIPQRDGGTHLTALRAAMTRTLNQSIEENELARKAKVETTGDDMREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE  + +   ++L++ P+EA  ++  +I+ + 
Sbjct: 229 CVLSVKVPDPKFSSQTKEKLVSSEVRPAVEEVVSEQMRNFLLEKPVEARIIVGKIIDAAR 288

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK RE   RK A+  L LPGKLADC +      E+++VEGDSAGGSAKQ R+R  
Sbjct: 289 AREAARKARELTRRKGALDGLGLPGKLADCQEKDPAQCEIYLVEGDSAGGSAKQGRDRRF 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q+I+ L+ ALG          E +RY ++IIMTDAD
Sbjct: 349 QAILPLKGKILNVERARFDKLVSSQEIVTLITALGTGIGKDEYSPEKVRYHRIIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|308157266|gb|ADO15560.1| DNA gyrase subunit B [Gordonia sp. hbs1]
          Length = 452

 Score =  257 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 156/457 (34%), Positives = 239/457 (52%), Gaps = 38/457 (8%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+ +Y +SGGLHGVGISVVNALS ++ + +AR    ++Q +S   P 
Sbjct: 1   EVIMTVLHAGGKFDSDSYAVSGGLHGVGISVVNALSTKVELEIARDGHNWAQTYSYAKPG 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK- 249
           +   ++     K GT + F PDP+IF +   F+A  + +  Q  A+L+  +    +  + 
Sbjct: 61  AL--EQGDATRKTGTTVRFWPDPQIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRP 118

Query: 250 ----------------------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
                                       E A+    P+   +++P GL  Y++     + 
Sbjct: 119 QAVEAPGDANGDEDAPATDVAEVVLTETEKAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQ 178

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I + +     + +G     VE A+ W       + ++ NTI T EGGTHE G R ALT 
Sbjct: 179 SIHNTVIGFSAKGEGH---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTS 235

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            + KYA   +   ++   +  DD+      ++S  + +P+F GQTKTKL + + +  V+ 
Sbjct: 236 TVNKYALEKKLIKEKDGKLTGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQR 295

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIER-SEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
              +   H+   NP EA  +++   +        RR +  V RKTA     LPGKLADC 
Sbjct: 296 TCNEHLGHWFEANPAEAKIIIKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCR 355

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
            N     E++IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++
Sbjct: 356 SNDPTKCEVYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSII 415

Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554
            A G     ++    LRY K+++MTDADVDG+HI +L
Sbjct: 416 TAFGTGIHDEFDISKLRYHKIVLMTDADVDGSHIRTL 452


>gi|183987572|gb|ACC65776.1| topoisomerase II [Pleurotus eryngii var. ferulae]
          Length = 692

 Score =  257 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 113/546 (20%), Positives = 216/546 (39%), Gaps = 37/546 (6%)

Query: 154 LHGVGISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEK-VRNKRGTRITFR 210
            HG G  + N  S E  +  A       +SQ +++ +      K     RN+  TR+TF+
Sbjct: 1   RHGYGAKLANIYSLEFTIETADKVNGKKYSQTWTKNMTQVGKAKITNNSRNEEYTRVTFK 60

Query: 211 PDPKIFGDKAGFDAA--RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           P+   FG           L K     A     VK   + ++    K    ++    +   
Sbjct: 61  PELTRFGMTHIDADTAGLLRKRVYDMAGTVKDVKVYLNDERL---KIKTFKQYVEMYIEA 117

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGG 328
                +      +     +   +           E A A  +   +  S+ N+I T +GG
Sbjct: 118 ATAGAKENSGGAAQAKPTVIYEQIS------PRWEVAFATSDGTFQQVSFVNSISTIKGG 171

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           TH + +   L++ I  +       +A ++    +       ++  I  P F  QTK  L 
Sbjct: 172 THVNYIADQLSKSIIAHIAKKN--KAATVKPAQVKNHMWIFVNALIENPTFDSQTKETLT 229

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKL 447
               +     AL + F   + +     + +++ V+  ++ +  ++ ++   +++  +  +
Sbjct: 230 LPAGKFGSRPALSEEFMKKVQK-----SSIIDQVLNWAKFKADQQIKKTDGSKRNRLTGM 284

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGS 504
                  +     A    L + EGDSA   A        R N  V PLRGK+LNV  A  
Sbjct: 285 AKLSDANNAGTKNAEKCTLILTEGDSAKSLAVAGLAVVGRVNFGVFPLRGKLLNVREARH 344

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           ++I  N++I ++ + +G +   +Y     LRY +++IMTD D DG+HI  LL+ F     
Sbjct: 345 DQIMKNEEIQNIKKIMGLQHNKEYTSVSSLRYGRLMIMTDQDHDGSHIKGLLINFLDHFY 404

Query: 564 YDLIEQK-HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
             L++    L     P+ R+T+G +          +  LEE       K     +KGLG 
Sbjct: 405 PSLLKVPEFLVEFVTPIVRVTKGNQRKNFLTIPEYETWLEETPDS--KKWTAKYYKGLGT 462

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE--RASF 680
              +  +E      K  +    +  +  +L     + +K    KAD+R +++++    ++
Sbjct: 463 SSDADAREYFSQMGKHMIPFATMEDEERAL--IDLAFSK---KKADDRKEWLRQFKPGTY 517

Query: 681 ID-DVG 685
           +D ++ 
Sbjct: 518 LDHNID 523


>gi|148971405|gb|ABR20240.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 420

 Score =  257 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 155/430 (36%), Positives = 244/430 (56%), Gaps = 15/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALS +L + + R+  ++ Q++  G P+
Sbjct: 1   EVIMTVLHAGGKFDENSYKVSGGLHGVGVSVVNALSTKLTLAIRREGELWEQEYHCGDPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+  K      RGT + F PDP++F     F  ARL K  +  AYL+  +    + ++ 
Sbjct: 61  APIAAKGPAT-ARGTTVHFWPDPEVFES-TEFSFARLEKRFRELAYLNDGLTILLNDERG 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             ++ G+     +++ GG+  ++    ++R  +   +   K ++ G     V+ AI W +
Sbjct: 119 DRKREGV-----YHYQGGVAAFVLDINKSREAVHPTVIRIKGDRDGVM---VDTAIQWND 170

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R A+TR +  Y E      K  ++I + D+     
Sbjct: 171 GYNESVFPFTNNIPQADGGTHLTGFRSAMTRVLGGYMEREGIATKAKVTIDAADMREGMT 230

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERS 426
            +LSV + +P+F+ QTK KLVS + +  VE+ + +    +L + P EA  +   ++    
Sbjct: 231 AVLSVKVPDPKFSSQTKDKLVSSEVRPIVESVIAEGVGTFLDEKPKEAQAICAKIVEAAK 290

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R  
Sbjct: 291 AREAARKARDITRRKGALDIANLPGKLADCQEKDPALCEIYLVEGDSAGGSAKQGRDRKF 350

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +++  + +I  L+ ALG            LRY ++IIMTDAD
Sbjct: 351 QAILPLKGKILNVERARFDRMLESDEIGALITALGTGIGQDEFNAGKLRYHRIIIMTDAD 410

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 411 VDGSHIRTLL 420


>gi|326536158|ref|YP_004300588.1| gp60plus39 DNA topoisomerase subunit [Acinetobacter phage 133]
 gi|299483239|gb|ADJ19354.1| gp60plus39 DNA topoisomerase subunit [Acinetobacter phage 133]
          Length = 611

 Score =  257 bits (655), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 126/655 (19%), Positives = 236/655 (36%), Gaps = 81/655 (12%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTDE-----------------KALHHLFSEVIDNAMDE 88
            + I  L+  E     PGMY+G T                     L  L  E   N++DE
Sbjct: 3   ENKITSLDDREHCLALPGMYVGSTAREAQELFIDGVYGPQVFCTGLIKLVEETYINSLDE 62

Query: 89  VIA---GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN--KSTLEIILTTLHAGGKF 143
            I     +AN I +++      T+ DNGRG+P                +  T + AGG F
Sbjct: 63  AIRTNFKFANKIAINMTET-VATIQDNGRGLPQNIVVDKDGAELPGAVVAYTVVKAGGNF 121

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
                + + G+HG+G S+ N  + +            S   +  +      +  K    +
Sbjct: 122 GLDDRK-TAGMHGMGGSLANIFAKDFKAVTCNGENEISLHCTDNMSNIDWTQ--KKAKYK 178

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT++ F PD + F      +    +   Q +       +  +             +    
Sbjct: 179 GTKVEFEPDFERFDCTGFTEIDMAIIRNQLQTLAVVYPQIEF-------------KFNGQ 225

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTIL 323
              G  KTY +   E+     ++               ++  +A  E+     SY N+I 
Sbjct: 226 KIQGNFKTYAKQYDESVLTSVTD--------------NIQLGLARSEDGFRHLSYVNSIH 271

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSV-FIREPEFAGQ 382
           T  GG+H   +   L+    +     + K  I++    +      +L +  +    F  Q
Sbjct: 272 TKVGGSHVDYIMDELS---NELIPKIKRKYKITVNKARIKECLTLLLFIKDMSNLRFDSQ 328

Query: 383 TKTKLVSL--DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL-RRRKQREVN 439
           TK +L S   + ++ V+  +    + ++     +   +L  +IE +  +     K  +  
Sbjct: 329 TKERLTSPTGEVKKHVDIDIGKLANSFM-----KNETILMPIIEAALAKQLAAEKSAKTK 383

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
              A +K ++   +          T LF+ EGDSA G     R++      PLRGK+LN 
Sbjct: 384 ADNAAKKAKVAKHIKANLYGKPAETTLFLTEGDSAIGYLLSTRDQELHGGYPLRGKVLNT 443

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
                 ++  N+++ D+    G +   +   E+L Y+ + I  D+D DG       L  F
Sbjct: 444 WGKTYPQMMANKELFDICAITGLKLGDKA--ENLNYKYIAIFVDSDFDGLGSIYPSLLAF 501

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
           +    +L EQ  + L   P+    +G + ++ +      K+ +  K       ++S  KG
Sbjct: 502 FSNWPELFEQGRIRLCKAPVTIAVKGKEELFFYSMSEYNKVRDTLK-----GYKVSYIKG 556

Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
           LG +          +          +   +    D ++    L G   D R +++
Sbjct: 557 LGTLTEDNYSRVINNP---------VYDTIVLPPDYKEQFEMLFGKDPDPRKEWM 602


>gi|190341290|gb|ACE74722.1| DNA gyrase subunit B [Bacillus subtilis]
          Length = 406

 Score =  257 bits (655), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 162/415 (39%), Positives = 234/415 (56%), Gaps = 13/415 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKFD S Y++SGGLHGVG SVVNALS EL  TV R   I  Q + RG+P++ LE   
Sbjct: 1   HAGGKFDGSGYKVSGGLHGVGASVVNALSTELDATVHRDGKIHRQTYKRGVPVTDLEIIG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +  +  GT   F PDP+IF +   +D   L    +  A+L+  V       +E  E+   
Sbjct: 61  ET-DHTGTTTHFVPDPEIFSETTEYDYDLLANRVRELAFLTKGVNITIEDKREGQERKNE 119

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
                +++ GG+K+Y++    ++ ++  E    + EK G    TVE A+ + +     I 
Sbjct: 120 -----YHYEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGI---TVEVALQYNDSYTSNIY 171

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFI 374
           S+ N I T EGGTHE+G +  LTR I  YA      +    ++  DD+      I+S+  
Sbjct: 172 SFTNNINTYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISIKH 231

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
             P+F GQTKTKL + +A+   +       + ++++NP  A K+++  +  +  R+  +K
Sbjct: 232 PGPQFEGQTKTKLGNSEARTITDTLFSTAMETFMLENPDAAKKIVDKGLMAARARMAAKK 291

Query: 435 Q-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
                 RK+A+    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LPLR
Sbjct: 292 ARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLR 351

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           GKILNV  A  +KI +N ++  ++ ALG      +  E  RY +V+IMTDADVDG
Sbjct: 352 GKILNVEKARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHRVVIMTDADVDG 406


>gi|253826352|gb|ACT36479.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  257 bits (655), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 157/415 (37%), Positives = 234/415 (56%), Gaps = 15/415 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKF    Y++SGGLHGVG+SVVNALS +L V V R+  ++ Q++  G P   +++  
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSKKLEVQVKREGEVYQQEYRCGAPQYDIKEIG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +     GT++TF PD +IF +   +D   L    +  A+L+  ++   + ++        
Sbjct: 61  E-SEMTGTQVTFWPDEEIFTETTEYDFDTLQSRIRELAFLNKGIEVVLTDER-------T 112

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
              + F + GG+ ++++   +NR  +       + EK       VE A+ + +     I 
Sbjct: 113 DISQTFIYEGGIISFVEHLNQNREPVHQPPIYVEGEKDHIQ---VEVALQYNDSYTENIY 169

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
           S+ N I T EGGTHESG + ALTR + +YA       +   ++  DD+      I+SV I
Sbjct: 170 SFANNINTHEGGTHESGFKSALTRILNEYARKYNAIKESDANLSGDDVREGLTAIISVKI 229

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRR 433
            +P+F GQTKTKL + + +  VE+   +  + +L +NP  A K++E  V  +      R+
Sbjct: 230 PDPQFEGQTKTKLGNSEVRGIVESLFAEKLEEFLQENPAIAKKIVEKGVQAQRAREAARK 289

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            +    RK+A+    LPGKLADCS   A  +E++IVEGDSAGGSAKQ R+R  QA+LPLR
Sbjct: 290 ARELTRRKSALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLR 349

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           GKILNV  A  +KI +N +I  ++ ALG      +     RY K+IIMTDADVDG
Sbjct: 350 GKILNVEKARLDKILSNAEIRAIITALGTGIGEDFDISKARYHKIIIMTDADVDG 404


>gi|262272990|gb|ACY40690.1| DNA gyrase subunit beta [Xanthomonas campestris pv.
           mangiferaeindicae]
 gi|262272992|gb|ACY40691.1| DNA gyrase subunit beta [Xanthomonas campestris pv.
           mangiferaeindicae]
 gi|262272996|gb|ACY40693.1| DNA gyrase subunit beta [Xanthomonas campestris pv.
           mangiferaeindicae]
          Length = 419

 Score =  257 bits (655), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 164/430 (38%), Positives = 247/430 (57%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+ L + + R    + Q+++ G P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            PL++ E     RGT + F+P   IF D   F    L +  +  ++L+  VK     ++ 
Sbjct: 61  YPLKQLEASTK-RGTTLRFKPSVAIFSD-VEFHYDILARRLRELSFLNSGVKITLIDERG 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                    +++F++ GG++++++   + +S +   + +   E  G     V+ A+ W +
Sbjct: 119 ------EGRRDDFHYEGGIRSFVEHLAQLKSPLHPNVISVTGEHNGIM---VDVALQWTD 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR +  Y E     +   +    DD+    +
Sbjct: 170 AYQETMYCFTNNIPQKDGGTHLAGFRAALTRVLSTYIEQNGIAKQAKVALTGDDMREGMI 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            +LSV + +P F+ QTK KLVS D +  VENA       +L +NP EA  +   +++   
Sbjct: 230 AVLSVKVPDPSFSSQTKEKLVSSDVRPAVENAFGARLQEFLQENPNEAKAITGKIVDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARKARDLTRRKGALDIAGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QAVLPLRGKILNV  A  +++  + Q+  L+ ALG    R +Y  + LRY ++I+MTDAD
Sbjct: 350 QAVLPLRGKILNVERARFDRMLASDQVGTLITALGTGIGRDEYNPDKLRYHRIILMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHIRTLL 419


>gi|2196812|gb|AAB80823.1| DNA gyrase beta-subunit [Shewanella putrefaciens]
          Length = 419

 Score =  257 bits (655), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 160/430 (37%), Positives = 244/430 (56%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L +T+ R   ++ Q ++ G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLQMTIRRAGKVYEQFYTHGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+++        GT I F P    F D   F    L K  +  ++L+  V      +++
Sbjct: 61  APIKEIGDATK-TGTEIRFWPSEDTFSD-VEFHFEILAKRVRELSFLNSGVGIRLVDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + E F + GG+  ++     N++ ++ ++F    E++     TVE A+ W +
Sbjct: 119 N-------KNEFFKYEGGISAFVDYLNRNKTPVNKDVFHFMQERED--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                I  + N I   +GGTH  G R ALTR +  Y E      K   S   DD      
Sbjct: 170 GYQENIFCFTNNIPQRDGGTHLVGFRSALTRNLNSYMENEGYNKKGKTSATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +  + YL++NP +A   +  +++   
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEKLNDYLLENPADAKLFVGKIVDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +E++IVEGDSA GSAKQ RNR N
Sbjct: 290 AREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSACGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC     +Y  +  RY  +IIMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGADEYNPDKTRYHNIIIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHILTLL 419


>gi|2353020|gb|AAB92595.1| gyrase beta subunit [Shewanella frigidimarina]
          Length = 419

 Score =  257 bits (655), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 161/430 (37%), Positives = 246/430 (57%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L +T+ R   ++ Q ++ G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLQLTIRRAGKVYEQFYTHGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+++        GT + F P    F D   F    L K  +  ++L+  V      +++
Sbjct: 61  APIKEIGDAVK-TGTELRFWPSSDTFTD-VEFHFEILAKRVRELSFLNSGVGIRLVDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             +       E F +  G+  ++     N++ I+ ++F    E++     TVE A+ W +
Sbjct: 119 GED-------EFFKYESGISAFVDYLNRNKTPINKDVFHFSHERED--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R ALTR +  Y E      K   S   DD      
Sbjct: 170 GYQENIFCFTNNIPQRDGGTHLAGFRGALTRNLNNYMEREGFNKKGKTSATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            ++SV + +P+F+ QTK KLVS + +  VE  + +  + YL++NP +   ++  +++ + 
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGEQLNDYLLENPADVKLIVGKIVDAAR 289

Query: 428 ERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK  E   RK A+     PGKLADC +     +E++IVEGD AGGSAKQ RNR N
Sbjct: 290 AREAARKACEKTRRKGALDLGGPPGKLADCQEKDPGLSEIYIVEGDFAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  +  RY  +IIMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKTRYHNIIIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHILTLL 419


>gi|4589346|gb|AAD26460.1|AF136388_1 gyrase B subunit [Bacillus cereus]
          Length = 407

 Score =  257 bits (655), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 158/416 (37%), Positives = 235/416 (56%), Gaps = 14/416 (3%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD   Y++SGGLHGVG SVVNALS EL V V R+  I  QK+ RGIP++ L+      ++
Sbjct: 2   FDGGGYKVSGGLHGVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQ 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT   F+PDP+IF +   ++   L    +  A+L+  +K      +E  +K      +E
Sbjct: 61  TGTITRFKPDPEIFQETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KE 114

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNT 321
           F++ GG+K+Y++    ++  I  E    +  K G     VE ++ + E       S+ N 
Sbjct: 115 FHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNN 171

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEF 379
           I T EGGTHE G + ALTR I  Y       +    ++  +D+      I+S+    P+F
Sbjct: 172 IHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQF 231

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREV 438
            GQTKTKL + +A+   E+   + F+ +L++NP  A K++E   +        ++ +   
Sbjct: 232 EGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELT 291

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK+A+    LPGKLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+N
Sbjct: 292 RRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIIN 351

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           V  A  +KI +N ++  ++ A+G      +  E  RY KVIIMTDADVDG+HI +L
Sbjct: 352 VEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGSHIRTL 407


>gi|94537348|gb|ABF29776.1| DNA gyrase B [Bacillus cereus biovar anthracis str. CI]
          Length = 405

 Score =  257 bits (655), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 159/415 (38%), Positives = 235/415 (56%), Gaps = 14/415 (3%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y++SGGLHGVG SVVNALS EL V V R+  I  QK+ RGIP++ L+      ++ GT
Sbjct: 1   GGYKVSGGLHGVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKIIGDT-DQTGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
              F+PDP+IF +   ++   L    +  A+L+  +K      +E  +K      +EF++
Sbjct: 60  ITRFKPDPEIFQETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHY 113

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILT 324
            GG+K+Y++    ++  I  E    +  K G     VE ++ + E       S+ N I T
Sbjct: 114 EGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHT 170

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQ 382
            EGGTHE G + ALTR I  Y       +    ++  +D+      I+S+    P+F GQ
Sbjct: 171 YEGGTHEVGFKTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRK 441
           TKTKL + +A+   E+   + F+ +L++NP  A K++E   +        ++ +    RK
Sbjct: 231 TKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRK 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           +A+    LPGKLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  
Sbjct: 291 SALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556
           A  +KI +N ++  ++ A+G      +  E  RY KVIIMTDADVDGAHI +LLL
Sbjct: 351 ARLDKILSNDEVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLL 405


>gi|253826382|gb|ACT36494.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  257 bits (655), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 156/415 (37%), Positives = 233/415 (56%), Gaps = 15/415 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKF    Y++SGGLHGVG+SVVNALS +L V V R+  ++ Q++  G P   +++  
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSKKLEVQVKREGKVYQQEYRCGAPQYDIKEIG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +     GT++TF PD +IF +   +D   L    +  A+L+  ++   + ++        
Sbjct: 61  E-SEMTGTQVTFWPDEEIFTETTEYDFDTLQSRIRELAFLNKGIEIVLTDER-------T 112

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
              + F + GG+ ++++   +NR  +       + EK       VE A+ + +     I 
Sbjct: 113 DISQTFIYEGGIISFVEHLNQNREPVHQPPIYVEGEKDHIQ---VEVALQYNDSYTENIY 169

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
           S+ N I T EGGTHESG + ALTR + +YA       +   ++  DD+      I+SV I
Sbjct: 170 SFANNINTHEGGTHESGFKSALTRILNEYARKYNAIKESDANLSGDDVREGLTAIISVKI 229

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRR 433
            +P+F GQTKTKL + + +  VE+   +  + +L +NP  A K++E  V  +      R+
Sbjct: 230 PDPQFEGQTKTKLGNSEVRGIVESLFAEKLEEFLQENPAIAKKIVEKGVQAQRAREAARK 289

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            +    RK A+    LPGKLADCS   A  +E++ VEGDSAGGSAKQ R+R +QA+LPLR
Sbjct: 290 ARELTRRKRALEVSSLPGKLADCSTKDASISEVYSVEGDSAGGSAKQGRDRHSQAILPLR 349

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           GKILNV  A  +KI +N +I  ++ ALG      +     RY K+IIMTDADVDG
Sbjct: 350 GKILNVEKARLDKILSNAEIRVIITALGTGIGEDFDISKARYHKIIIMTDADVDG 404


>gi|148971437|gb|ABR20256.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 426

 Score =  256 bits (654), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 167/433 (38%), Positives = 255/433 (58%), Gaps = 15/433 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD S+Y++SGGLHGVG +VVNALS+ + V + R +T F  +F  G P+
Sbjct: 1   EVIMTVLHAGGKFDQSSYKVSGGLHGVGAAVVNALSEWMDVRIWRDSTEFFIRFENGNPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL          GT + F+P P  F     FD A   +  +  A+L+  ++     ++ 
Sbjct: 61  APLRVVGPSERPTGTEVVFKPSPVTFTR-TEFDFAVFERRLRELAFLNSDLEISLRDER- 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
               +  P +  F + GGL  ++     ++S + S   T   E KG+    +E+A++W +
Sbjct: 119 ----HATPIQSCFCYRGGLVEFVAWLDRSKSALISLPITALREDKGS-GIKIEFALSWND 173

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGI 369
                +  + N I+  +GGTH +G R ALTR + KYA+    K  +S++ +D+      +
Sbjct: 174 SFHETMLCFTNNIIQRDGGTHLAGFRSALTRVVSKYADAIGKKDNVSLVGEDMREGLTAV 233

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           LSV + +P+F+ QTK KLVS + Q  V++A+ D  DH+   +P EA  L++ VI+ +  R
Sbjct: 234 LSVKVPDPKFSSQTKDKLVSSEVQPIVQSAVTDVLDHWFETHPKEAKALVQKVIDAAAAR 293

Query: 430 LRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
              RK R++ R+   +    LPGKLADC +     +E+FIVEGDSAGGSAKQ R+R  QA
Sbjct: 294 EAARKARDLTRRKGVLDVSSLPGKLADCQERDPSKSEIFIVEGDSAGGSAKQGRDRRTQA 353

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE------DLRYEKVIIMT 542
           +LPL+GKILNV  +  +++ ++ +I  L+ ALG  T     E+       +RY +V+IMT
Sbjct: 354 ILPLKGKILNVERSRFDRMLSSAEIGTLITALGTGTGPADPEQGGFDIGKIRYHRVVIMT 413

Query: 543 DADVDGAHIASLL 555
           DADVDG+HI +LL
Sbjct: 414 DADVDGSHIRTLL 426


>gi|29652729|gb|AAO87334.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652737|gb|AAO87338.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652942|gb|AAO87440.1| DNA gyrase B [Listeria monocytogenes]
          Length = 198

 Score =  256 bits (654), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 93/200 (46%), Positives = 125/200 (62%), Gaps = 2/200 (1%)

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A 
Sbjct: 1   LEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKAR 60

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ M
Sbjct: 61  LDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYM 120

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
             L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+KGLGEM
Sbjct: 121 RPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYKGLGEM 178

Query: 624 LASQLKETAMDANKRTLLRV 643
              QL +T M+   RTLL+V
Sbjct: 179 NPEQLWDTTMNPEHRTLLQV 198


>gi|148616478|gb|ABQ96982.1| GyrB [Nocardiopsis tropica]
          Length = 424

 Score =  256 bits (654), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 158/430 (36%), Positives = 232/430 (53%), Gaps = 10/430 (2%)

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
           +E+I+T LHAGGKFD  +Y +SGGLHGVG+SVVNALS  L V +     ++ Q      P
Sbjct: 1   IEVIMTVLHAGGKFDGKSYAVSGGLHGVGVSVVNALSTALDVEIRVHGHVWRQHCEMTAP 60

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
              L K  +  ++ GT+ITF PD  IF          L +  Q  A+L+  +      ++
Sbjct: 61  TGELVK-GETTDETGTQITFWPDGSIFETTTF-TFETLARRMQEMAFLNKGLSITIRDER 118

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
                 G P    F++  GL  Y++     +    + I + + E  G     VE A+ W 
Sbjct: 119 -PEHTDGGPTVNTFHYEDGLSDYVRHINAKKEPAHASIISFEEEGDGI---AVEVAMQWN 174

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISA 366
           +     + ++ NTI T EGGTHE G R ALT  + +YA   +   ++  ++  DD+    
Sbjct: 175 QSYTSSVHTFANTINTAEGGTHEEGFRSALTTLVNRYARDQKLLREKDDNLTGDDIREGL 234

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIER 425
             I+SV + +P+F GQTKTKL + +A+  V+    +    +  +NP EA  ++ +     
Sbjct: 235 TAIISVKLADPQFEGQTKTKLGNTEAKSFVQKVTNEHLRDWFERNPGEAKDVVSKASQAA 294

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
                 R+ +    RKT +    LPGKL+DC        E++IVEGDSAGGSAK  RN  
Sbjct: 295 RARVAARQARDLTRRKTLLETTSLPGKLSDCQSTNPEECEVYIVEGDSAGGSAKGGRNPH 354

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545
           NQA+LP+RGKILNV  +  ++I  N ++  ++ ALG     ++  E LRY KVI+MTDAD
Sbjct: 355 NQAILPIRGKILNVEKSRIDRILKNNEVQAIITALGTGIHEEFDAEKLRYHKVILMTDAD 414

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 415 VDGSHIRTLL 424


>gi|47155274|emb|CAG28941.1| gyraseB [Shewanella piezotolerans WP3]
 gi|86604465|emb|CAJ76130.1| DNA gyrase B subunit [Shewanella piezotolerans WP3]
          Length = 419

 Score =  256 bits (654), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 161/429 (37%), Positives = 243/429 (56%), Gaps = 16/429 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L +T+ R    + Q ++ G P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSHKLQLTIRRDGKAYEQFYTMGEPN 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            P++   +  +  GT I F P  + F D   F    L K  +  ++L+  V      +++
Sbjct: 61  EPIKPVGEATS-TGTVIRFWPSEETFSDVL-FHFDILAKRVRELSFLNSGVGIRLVDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             +       E F + GG+  ++     N++ ++ E+F    E++     TVE A+ W +
Sbjct: 119 NRD-------EFFKYEGGISAFVDYLNVNKTPVNKEVFHFIQERED--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R ALTR +  Y E      K       DD      
Sbjct: 170 GFQENIFCFTNNIPQRDGGTHLAGFRGALTRNLNNYMEREGFNKKGKTGATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
             +SV + +P+F+ QTK KLVS + +  VE  + +    YL+++P EA  ++  +I+   
Sbjct: 230 AAISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGEQLGDYLMEHPNEAKLIVGKIIDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  +  RY  ++IMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYDPDKTRYHNIVIMTDAD 409

Query: 546 VDGAHIASL 554
           VDG+HI +L
Sbjct: 410 VDGSHIRTL 418


>gi|18916405|dbj|BAB85499.1| DNA gyrase subunit B [Rhizobium leguminosarum]
          Length = 305

 Score =  256 bits (654), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 109/315 (34%), Positives = 171/315 (54%), Gaps = 14/315 (4%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DNA+DE +AG+A+++ V+L+ +G +TV DNGRGIP + H     
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHADIVTVTLNPDGSVTVTDNGRGIPTDIH-TGEG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALS  L + + R + I    F+ 
Sbjct: 60  VSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSVWLKLKIRRHDKIHEMSFTH 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G+  +PL+   +  N+ GT ++F P    F     FD   L    +  A+L+  V+   +
Sbjct: 120 GVADAPLKVTGEAPNETGTEVSFMPSTDTF-TMTEFDYGTLEHRLRELAFLNSGVRILLT 178

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +    K     +EE  + GGL+ ++      +  +  +    + EK G    TVE A+
Sbjct: 179 DKRHSDIK-----QEELRYDGGLEAFVAYLDRAKKSLVDKPVAIRGEKDGI---TVEVAM 230

Query: 307 AWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLM 363
            W +   E    + N I   +GGTH +G R ALTR +  YA+ +   +   +    +D  
Sbjct: 231 WWNDSYHENVLCFTNNIPQRDGGTHMAGFRAALTRQVVSYADSSGITKREKVTLQGEDCR 290

Query: 364 ISAVGILSVFIREPE 378
                +LSV + +P+
Sbjct: 291 EGLTAVLSVKVPDPK 305


>gi|88824771|gb|ABD52431.1| gyrase B [Shigella sonnei]
          Length = 405

 Score =  256 bits (654), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 157/416 (37%), Positives = 239/416 (57%), Gaps = 16/416 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL    +     G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIRRQIYEHGVPQAPLAVTGETEK-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F+
Sbjct: 60  TMVRFWPSLETFANVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    R
Sbjct: 230 QTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLL 555
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LL
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLL 405


>gi|203366781|gb|ACH98383.1| DNA gyrase B subunit [Geitlerinema sp. PCC 7105]
          Length = 374

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 118/351 (33%), Positives = 189/351 (53%), Gaps = 5/351 (1%)

Query: 78  FSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137
             EV+DN++DE +AGY   IE+ ++ +G ++V D+GRGIP E H K   +S LE +LT L
Sbjct: 1   VYEVVDNSVDEALAGYCTHIEIDINADGSVSVTDDGRGIPTEVHSK-TGRSALETVLTVL 59

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-KK 196
           HAGGKF    Y++SGGLHGVG+SVVNALS+ + VTV R+  + +Q++ RG P+  L+ K 
Sbjct: 60  HAGGKFGGGGYKVSGGLHGVGVSVVNALSEWVEVTVWREKKVHTQRYERGKPVEDLKTKP 119

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
              + + GT + F PD  IF     FD   +    +  AYL+  V+  ++ ++       
Sbjct: 120 SPDKKRTGTSVRFLPDRDIFTTGIEFDYTTIAGRIRELAYLNAGVRITFTDNRLEFLGTT 179

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT 316
            P  E + + GG++ Y+Q    ++  I  EI     E+    +  V    +    +  + 
Sbjct: 180 EPRIETYCYEGGIREYVQYMNRDKEPIHEEIIYVSGERNNV-QVEVALQWSIDAYSDNLL 238

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFI 374
            + N I T +GGTH  GL+  LTR +   A      +    ++  +++     G++SV +
Sbjct: 239 GFANNIRTVDGGTHLEGLKTVLTRTMNNIARKRNKLKEGASNLGGENVREGLTGVISVKV 298

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
            +PEF GQTKTKL + + +  V++ + +    YL   P  A  +LE  I+ 
Sbjct: 299 PDPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFRPNVADAILEKAIQA 349


>gi|148470182|gb|ABQ66039.1| gyrase b [uncultured bacterium]
 gi|148971303|gb|ABR20189.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 164/430 (38%), Positives = 245/430 (56%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD S+Y++SGGLHGVG+SVVNALSD+L +T+ R   +  +++  G PL
Sbjct: 1   EVIMTVLHAGGKFDASSYKVSGGLHGVGVSVVNALSDQLQLTIHRDGKVHRREYHLGTPL 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL        +RGT I F+P  +IF     F+   L K  +  ++L+  V+     ++E
Sbjct: 61  APLAVSGP-SEQRGTTIRFKPSAEIF-THIQFNYEILAKRLRELSFLNSGVRIELVDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                     + F   GGL+ +++    +R+ +   +   K++       T+E A+ W +
Sbjct: 119 N-------RSDVFQHEGGLQAFVKYLNRSRTPVHDTVLWFKSQDGPV---TIEVALQWND 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                +  Y N I   +GGTH +G R ALTR +  Y E   +  K  ++   DD      
Sbjct: 169 SYQESMFCYTNNIPQKDGGTHLAGFRSALTRTLNDYIEKESSAKKDKLTTTGDDAREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERS 426
            ILSV + +P+F+ QTK KLVS + +  VE A+      +L+++P +A  ++  +I    
Sbjct: 229 AILSVKLPDPKFSSQTKDKLVSSEVKGIVEAAVGAKLQDFLLEHPQDAKAIVAKIIEAAR 288

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +E+FIVEGDSAGGSAKQ R+R  
Sbjct: 289 AREAARKAREMTRRKGALDVAGLPGKLADCQEKDPALSEIFIVEGDSAGGSAKQGRDRRT 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+  + ++  L+ ALGC   +  +    LRY +VIIMTDAD
Sbjct: 349 QAILPLKGKILNVEKARFDKMLASAEVGTLITALGCGIGKDDFDIAKLRYHRVIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|119369988|gb|ABL68008.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 420

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 157/430 (36%), Positives = 250/430 (58%), Gaps = 15/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+  ++ Q++  G P+
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSTKLTLAIRREGELWEQEYHCGDPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+  K   +  RGT + F PDP++F     F  AR  K  +  AYL+  +    + ++ 
Sbjct: 61  APIAAKGPAKG-RGTTVHFWPDPEVFES-TEFSFARQEKRFRELAYLNDGLTILLNDERG 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             ++ G+     +++ GG+  ++    ++R  +   +   K ++ G     V+ AI W +
Sbjct: 119 DRKREGV-----YHYEGGVAAFVLDINKSREAVHPTVIRIKGDRDGVM---VDTAIQWND 170

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R A+TR +  Y E      K  ++I + D+     
Sbjct: 171 GYNESVFPFTNNIPQVDGGTHLTGFRSAMTRVLGGYMEREGIATKAKVTIDAADMREGMT 230

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE+ + +    +L + P EA  +   ++E ++
Sbjct: 231 AVLSVKVPDPKFSSQTKDKLVSSEVRPIVESVIAEGVGTFLDEKPKEAQAICAKIVEAAK 290

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK R+   RK A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R  
Sbjct: 291 AREAARKARDLTRRKGALDIANLPGKLADCQEKDPALCEIYLVEGDSAGGSAKQGRDRKF 350

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +++  + +I  L+ ALG            LRY ++II+TDAD
Sbjct: 351 QAILPLKGKILNVERARFDRMLESDEIGTLITALGTGIGQDEFNAGKLRYHRIIIITDAD 410

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 411 VDGSHIRTLL 420


>gi|148971429|gb|ABR20252.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 165/428 (38%), Positives = 236/428 (55%), Gaps = 13/428 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFDNS Y++SGGLHGVG+SVVNALS  L + + ++  +  Q + +G+P+
Sbjct: 1   EVIMTVLHAGGKFDNSLYKVSGGLHGVGVSVVNALSQTLELEIHQEGKLHRQVYHQGVPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL         RGT I F PD  I      F    L    + +A+L+  +         
Sbjct: 61  APLAVVGTTT-LRGTSIRFWPDLSIMET-DTFLFDTLAHRFREQAFLNPILTIV------ 112

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
              +     +E F+F GG+K+Y +   EN+  I  E+   + E     +  V +      
Sbjct: 113 -LREEESLREETFHFEGGIKSYNEFLKENKKTIH-EVLFFRRELPTGAQFEVAFQYQETT 170

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
           +N  I  + N I T EGGTH  G R ALTR I ++ +  Q  +   +  +D+      ++
Sbjct: 171 DNETILGFANNIFTKEGGTHIKGFRTALTRVINRFIKDKQLNKGEELRGEDIREGLTAVV 230

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV I +P+F GQTK KL S      +E  L +       + P  A K+ +  I+ +  R 
Sbjct: 231 SVRIPDPQFEGQTKAKLGSSWVAGAMETFLAEEMQERFEEFPQIAKKIADKGIQTAMARE 290

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK +E   RK  +    LPGKLADC ++     EL+IVEGDSAGGSAKQ R+R  QA+
Sbjct: 291 AARKAKELAKRKNVLEGSNLPGKLADCQESDPAKCELYIVEGDSAGGSAKQGRDRKFQAI 350

Query: 490 LPLRGKILNVASA-GSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVD 547
           LPL+GKILNV  A G+E+   + ++  LV A+GC   ++   +  LRY K+IIMTDADVD
Sbjct: 351 LPLKGKILNVKKAGGAERFVTHDEVRALVTAVGCGLGNEEYSQKNLRYHKIIIMTDADVD 410

Query: 548 GAHIASLL 555
           G+HI +LL
Sbjct: 411 GSHIRTLL 418


>gi|119369946|gb|ABL67987.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 420

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 157/430 (36%), Positives = 250/430 (58%), Gaps = 15/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHA GKFD+++Y++SGGLHGVG+SVVNALS +L + + R+  ++ Q++  G P+
Sbjct: 1   EVIMTVLHAAGKFDDNSYKVSGGLHGVGVSVVNALSTKLTLAIRREGELWEQEYHCGDPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+  K   +  RGT + F PDP++F     F  ARL K  +  AYL+  +    + ++ 
Sbjct: 61  APIAAKGPAKG-RGTTVHFWPDPEVFES-TEFSFARLEKRFRELAYLNDGLTILLNDERG 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             ++ G+     +++ GG+  ++    ++R  +   +   K ++ G     V+ AI W +
Sbjct: 119 DRKREGV-----YHYEGGVAAFVLDINKSREAVHPTVIRIKGDRDGVM---VDTAIQWND 170

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R A+TR +  Y E      K  ++I + D+     
Sbjct: 171 GYNESVFPFTNNIPQVDGGTHLTGFRSAMTRVLGGYMEREGIATKAKVTIDAADMREGMT 230

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE+ + +    +L + P EA  +   ++E ++
Sbjct: 231 AVLSVKVPDPKFSSQTKDKLVSSEVRPIVESVIAEGVGTFLDEKPKEAQAICAKIVEAAK 290

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK R+   RK A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R  
Sbjct: 291 AREAARKARDLTRRKGALDIANLPGKLADCQEKDPALCEIYLVEGDSAGGSAKQGRDRKF 350

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +++  + +I  L+ ALG            LRY ++II+TDAD
Sbjct: 351 QAILPLKGKILNVERARFDRMLESDEIGTLITALGTGIGQDEFNAGKLRYHRIIIITDAD 410

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 411 VDGSHIRTLL 420


>gi|27544666|dbj|BAC55028.1| DNA gyrase B subunit [Legionella quinlivanii]
          Length = 299

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 107/312 (34%), Positives = 168/312 (53%), Gaps = 17/312 (5%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DN++DE +AG+   I V +  +  +TV D+GRGIPV  H K   
Sbjct: 1   DTDDGTGLHHMVFEVVDNSIDEALAGHCKEIHVRIHADESITVKDDGRGIPVVIH-KEEG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           +S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+ELH+ + R   +  Q +  
Sbjct: 60  RSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLLIRRHGKVHEQHYRN 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G+P +PL    +  +  GT++ F+P    F +   F    L K  +  ++L+  V     
Sbjct: 120 GVPDAPLTATGEASS-TGTQVWFKPSANTFSN-IEFHYDILAKRLRELSFLNSGVCIHLF 177

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
            ++         +++ F + GG+K +++    N++ I   +F+   EK       +E A+
Sbjct: 178 DER-------TQKQDTFRYEGGIKAFVEHLNRNKTPIMPIVFSLTGEKDNIQ---IELAM 227

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W +     I  + N I   +GGTH +G R ALTR +  Y E      K  I+   DD  
Sbjct: 228 QWNDSFQETIFCFTNNIPQRDGGTHLAGFRAALTRTLNNYIENEGFAKKAKITTTGDDAR 287

Query: 364 ISAVGILSVFIR 375
                +LSV + 
Sbjct: 288 EGLTAVLSVKVP 299


>gi|307939330|gb|ADN95856.1| DNA gyrase B [Hymenobacter actinosclerus]
          Length = 437

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 168/441 (38%), Positives = 243/441 (55%), Gaps = 21/441 (4%)

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           +I+T LHAGGKFD  +Y++SGGLHGVG+S VNALS++L VTV R   ++ Q++  G P  
Sbjct: 1   LIMTVLHAGGKFDKDSYKVSGGLHGVGVSCVNALSEDLKVTVRRNGKVYEQEYKIGAPQY 60

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
           P+ +     ++ GT++ F PD  IF +   +  A +    +  ++L+  ++   +  +E 
Sbjct: 61  PVREIG-TTDEHGTQVEFLPDASIFTEHI-YKYATIASRLRELSFLNSGIRLTLTDRREP 118

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
            E       EEFY  GGL  ++Q                   +KG+    VE A+ + + 
Sbjct: 119 GENGAEFRGEEFYSTGGLAEFVQYLDGTERHALMPAPIHVISEKGST--PVEVALQYNDS 176

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVG 368
               I SY N I T EGGTH +G R ALTR +K YA+ +    K  + I  +D       
Sbjct: 177 YQENIFSYVNNINTHEGGTHVAGFRSALTRTLKAYADKSGKLEKAKVEISGEDFREGLTA 236

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSE 427
           ++SV ++EP+F GQTKTKL + +    V   + +    YL +NP EA  ++E VI     
Sbjct: 237 VISVKVQEPQFEGQTKTKLGNNEVNGAVNTVVGEILAQYLEENPKEAGIIVEKVILAAKA 296

Query: 428 ERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
               R+ +  V RK+ +    LPGKLADCS++     E+++VEGDSAGG+AKQ RNR+ Q
Sbjct: 297 RIAARKAREMVQRKSVLGSTSLPGKLADCSESDPEICEIYLVEGDSAGGTAKQGRNRAFQ 356

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-------------RSQYREEDLR 534
           A+LPLRGKILNV  A   +I  N++I +++ ALG                        LR
Sbjct: 357 AILPLRGKILNVEKAQEHRILENEEIRNMITALGVSFGVAADPEKGIEADSKALNINKLR 416

Query: 535 YEKVIIMTDADVDGAHIASLL 555
           Y KVIIMTDADVDG+HI +L+
Sbjct: 417 YHKVIIMTDADVDGSHIRTLV 437


>gi|148971415|gb|ABR20245.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 420

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 153/430 (35%), Positives = 244/430 (56%), Gaps = 15/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALS +L + + R+  ++ Q++  G P+
Sbjct: 1   EVIMTVLHAGGKFDENSYKVSGGLHGVGVSVVNALSTKLTLAIRREGELWEQEYHCGDPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+  K   +   GT + F PDP++F     F  ARL +  +  AYL+  +    + ++ 
Sbjct: 61  APIAAKGPAKG-TGTTVHFWPDPEVFES-TEFSFARLEERFRELAYLNDGLTILLNDERG 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             ++ G+     +++ GG+  ++    ++R  +   +   K ++ G     V+ AI W +
Sbjct: 119 DRKREGV-----YHYEGGVAAFVLDINKSREAVHPTVIRIKGDRXGVM---VDTAIQWND 170

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R A+TR +  Y E      K  ++I + D+     
Sbjct: 171 GYNESVFPFTNNIPQADGGTHLTGFRSAMTRVLGGYMEREGIATKAKVTIDAADMREGMT 230

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERS 426
            +LSV + +P+F+ QTK KLVS + +  VE+ + +    +L + P EA  +   ++    
Sbjct: 231 AVLSVKVPDPKFSSQTKDKLVSSEVRPIVESVIAEGVGTFLDEKPKEAQAICAKIVEAAK 290

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R  
Sbjct: 291 AREAARKARDITRRKGALDIANLPGKLADCQEKDPALCEIYLVEGDSAGGSAKQGRDRKF 350

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +++  + +I  L+ ALG            LRY ++IIMTDAD
Sbjct: 351 QAILPLKGKILNVERARFDRMLESDEIGTLITALGTGIGQDEFNAGKLRYHRIIIMTDAD 410

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 411 VDGSHIRTLL 420


>gi|56409816|emb|CAH65717.1| DNA gyrase [Vibrio aestuarianus]
          Length = 421

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 161/430 (37%), Positives = 244/430 (56%), Gaps = 14/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LH GGKFD+++Y++SGGLHGVG SVVNALS+++ +T+ R+  IF Q +  G+P 
Sbjct: 1   EVIMTVLHGGGKFDDNSYKVSGGLHGVGASVVNALSEKVELTIKREGEIFQQIYHHGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    K     GTRI F P  + F +   F    L K  +  ++L+  V    + ++E
Sbjct: 61  APLAVIGKTEE-TGTRIRFWPSEETFTN-IEFHYEILAKRLRELSFLNSGVSIKLTDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + +   F GG++  ++    N++ I  +IF     ++     TVE A+ W +
Sbjct: 119 ------EDKXDXXMFEGGIRAXVEHLNRNKTPIHQKIFYFDHTRE-EDGITVEVAMQWND 171

Query: 311 ENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR +  + +      K   +   DD      
Sbjct: 172 GFQXGVYCFTNNIPQRDGGTHLAGFRGALTRTLNNFMDKEGYSKKAQAATSGDDAREGLT 231

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +L++NP EA  +   +I+   
Sbjct: 232 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMSEKLSEFLIENPTEAKIVCGKIIDAAR 291

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ R R N
Sbjct: 292 AREAARKARDMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRXRKN 351

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV     +K+ ++Q++  L+ ALGC   R +   + LRY  +IIM DAD
Sbjct: 352 QAILPLKGKILNVEKXRFDKMLSSQEVATLITALGCGIGRDEXNPDKLRYHNIIIMADAD 411

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 412 VDGSHIRTLL 421


>gi|29652757|gb|AAO87348.1| DNA gyrase B [Listeria monocytogenes]
          Length = 211

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 93/212 (43%), Positives = 129/212 (60%), Gaps = 2/212 (0%)

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +R +    + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+L
Sbjct: 2   AKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAIL 61

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           P+RGKILNV  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAH
Sbjct: 62  PIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAH 121

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           I +LLLT FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  
Sbjct: 122 IRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDT 179

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLR 642
           K  I R+KGLGEM   QL +T M+   RTLL+
Sbjct: 180 KYSIQRYKGLGEMNPEQLWDTTMNPEHRTLLQ 211


>gi|119369994|gb|ABL68011.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 163/428 (38%), Positives = 234/428 (54%), Gaps = 13/428 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFDNS Y++SGGLHGVG+SVVNALS  L + + ++  +  Q + +G+P 
Sbjct: 1   EVIMTVLHAGGKFDNSLYKVSGGLHGVGVSVVNALSRRLELGIYQEGRLHRQVYHQGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL         RGT I F PD  I      F    L    +  A+L+  +         
Sbjct: 61  APLSVVG-TTALRGTSIRFWPDLSIMET-DTFLFDTLAHRFRELAFLNPILTIV------ 112

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
              +     +E F+F GG+K+Y +   EN+  I  E+   + E     +  V +      
Sbjct: 113 -LREEESLREETFHFEGGIKSYNEFLNENKKTIH-EVLFFRRELPSGAQFEVAFQYQETT 170

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
           +N  I  + N I T EGGTH  G R ALTR I ++ +  Q  +   +  +D+      ++
Sbjct: 171 DNETILGFANNIFTKEGGTHIKGFRTALTRVINRFIKDKQLNKGEELRGEDIREGLTAVV 230

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV I +P+F GQTK KL S      +E  L +       + P  A K+ +  I+ +  R 
Sbjct: 231 SVRIPDPQFEGQTKAKLGSSWVSGAMETFLAEEMQERFEEFPQIAKKIADKAIQTAMARE 290

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK +E   RK  +    LPGKLADC ++     EL+IVEGDSAGGSAKQ R+R  QA+
Sbjct: 291 AARKAKELAKRKNVLEGSNLPGKLADCQESDPAKCELYIVEGDSAGGSAKQGRDRKFQAI 350

Query: 490 LPLRGKILNVASA-GSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVD 547
           LPL+GKILNV  A G+E+   + ++  L+ A+GC   ++   +  LRY K+II+TDADVD
Sbjct: 351 LPLKGKILNVEKAGGAERFVTHDEVRALITAVGCGLGNEEYSQKNLRYHKIIIITDADVD 410

Query: 548 GAHIASLL 555
           G+HI +LL
Sbjct: 411 GSHIRTLL 418


>gi|37683433|gb|AAQ98790.1| gyrase B [Cardinium endosymbiont of Encarsia pergandiella]
          Length = 428

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 174/434 (40%), Positives = 249/434 (57%), Gaps = 15/434 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD  TY+ISGGLHGVG+S VNALS  L VTV R   I+ Q++++G+P 
Sbjct: 1   EVIMTVLHAGGKFDKGTYKISGGLHGVGVSCVNALSAHLAVTVYRNGKIYKQEYAQGVPC 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            P+++       RGT + F PD  IF     ++   ++   Q  AYL+  ++      +E
Sbjct: 61  YPVKEIG-TTELRGTTVHFTPDSSIFTTTV-YNLHTIINRLQGLAYLNVGLRMQLEDRRE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E+   P ++ FY  GGL  ++      ++ I       + EK       V+ A+ +  
Sbjct: 119 QDEQG-NPFQQTFYSQGGLLEFVSHLERTKTSIMPTPILVEGEKNNI---GVQVAMTYNT 174

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                + SY N I T EGG H +G + ALTR +K YA+ +    K  I II DD      
Sbjct: 175 GYSETVVSYVNNIHTIEGGMHVTGFKRALTRTLKNYADKSGLLEKAKIEIIGDDFREGLT 234

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERS 426
            ++SV + EP+F GQTKTKL + + Q  VE+ + +   +YL ++P EA  ++  VI    
Sbjct: 235 AVISVKVGEPQFEGQTKTKLGNAEVQSAVESCVAEVLHYYLEEHPKEAKLIVNKVIVAAQ 294

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
             +  R+ +  V RK  +    LPGKLADCS+      ELF+VEGDSAGG+AK  RNR  
Sbjct: 295 ARQAARKAREMVQRKNVLMSNSLPGKLADCSERDPTLCELFLVEGDSAGGTAKMGRNRRF 354

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIM 541
           QA+LPL+GKILNV  A + KI +N+Q+ +++ ALG    +   E+      LRY K++IM
Sbjct: 355 QAILPLKGKILNVEKAQAYKIYDNEQVRNMITALGVAIGTDSNEQAINLDKLRYHKIVIM 414

Query: 542 TDADVDGAHIASLL 555
           TDADVDG+HI +LL
Sbjct: 415 TDADVDGSHIRTLL 428


>gi|29652775|gb|AAO87357.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652789|gb|AAO87364.1| DNA gyrase B [Listeria monocytogenes]
          Length = 210

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 93/212 (43%), Positives = 129/212 (60%), Gaps = 2/212 (0%)

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +R +    + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+L
Sbjct: 1   AKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAIL 60

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           P+RGKILNV  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAH
Sbjct: 61  PIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAH 120

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           I +LLLT FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  
Sbjct: 121 IRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDT 178

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLR 642
           K  I R+KGLGEM   QL +T M+   RTLL+
Sbjct: 179 KYSIQRYKGLGEMNPEQLWDTTMNPEHRTLLQ 210


>gi|33187331|gb|AAP97528.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni]
          Length = 406

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 169/420 (40%), Positives = 233/420 (55%), Gaps = 18/420 (4%)

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFD  TY++SGGLHGVG+SVVNALS +L  TV R   I+ Q+FS G  +S   
Sbjct: 1   TVLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFG 60

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
              K +   GT I F PD +IF     FD   L K     AYL+ ++   +  ++     
Sbjct: 61  VIGKSKK-TGTTIEFWPDDQIFEVT-EFDYEILAKRFHELAYLNPKITINFKDNR----- 113

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE 314
             + + E F+F GG+  ++    +  +L  +  F+   E        VE A+ + +   E
Sbjct: 114 --VGKHESFHFEGGISQFVTDLNKKEALTKAIFFSVDEED-----VNVEVALLYNDTYSE 166

Query: 315 IT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
              S+ N I T +GGTHE+G R+ LTR I  Y E      ++   I  DD+    + I+S
Sbjct: 167 NLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGDDVREGLIAIVS 226

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V + EP+F GQTK KL S   +  V  A  +    Y  +NPIEA  ++   +  +  R  
Sbjct: 227 VKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREA 286

Query: 432 RRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +K RE   +K ++    LPGKLADC       +E+++VEGDSAGGSAKQ R RS QA+L
Sbjct: 287 AKKARELTRKKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAIL 346

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           PLRGKILNV  A  +KI  ++QI +++ A GC     +    LRY K+IIMTDADVDG+H
Sbjct: 347 PLRGKILNVEKARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSH 406


>gi|148470232|gb|ABQ66063.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 163/428 (38%), Positives = 233/428 (54%), Gaps = 13/428 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFDNS Y++SGGLHGVG+SVV+ALS  L + + ++  +  Q + +G+P+
Sbjct: 1   EVIMTVLHAGGKFDNSLYKVSGGLHGVGVSVVSALSQTLELEIHQEGKLHRQAYHQGVPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL         RGT I F PD  I      F    L    +  A+L+  +         
Sbjct: 61  APLAVVGTTT-LRGTSIRFWPDLSIMET-DTFLFDTLAHRFRELAFLNPILTIV------ 112

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
              +     +E F+F GG+K+Y +   EN+  I  E+   + E     +  V +      
Sbjct: 113 -LREEESLREETFHFEGGIKSYNEFLNENKKTIH-EVLFFRRELPTGAQFEVAFQYQETT 170

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
           +N  I  + N I T EGGTH  G R ALTR I ++ +  Q  +   +  +D+      + 
Sbjct: 171 DNETILGFANNIFTKEGGTHIKGFRTALTRVINRFIKDKQLNKGEELRGEDIREGLTAVA 230

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV I +P+F GQTK KL S      +E  L +       + P  A K+ +  I+ +  R 
Sbjct: 231 SVRIPDPQFEGQTKAKLGSSWVAGAMETFLAEEMQERFEEFPQIAKKIADKGIQTAMARE 290

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK +E   RK  +    LPGKLADC ++     EL+IVEGDSAGGSAKQ R+R  QA+
Sbjct: 291 AARKAKELAKRKNVLEGSNLPGKLADCQESDPAKCELYIVEGDSAGGSAKQGRDRKFQAI 350

Query: 490 LPLRGKILNVASAGS-EKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVD 547
           LPL+GKILNV  AG  E+   + ++  L+ A+GC   ++   +  LRY K+IIMTDADVD
Sbjct: 351 LPLKGKILNVEKAGWAERFVTHDEVRALITAVGCGLGNEEYSQKNLRYHKIIIMTDADVD 410

Query: 548 GAHIASLL 555
           G+HI +LL
Sbjct: 411 GSHIRTLL 418


>gi|33187277|gb|AAP97501.1| DNA gyrase subunit B [Campylobacter jejuni]
          Length = 406

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 167/420 (39%), Positives = 234/420 (55%), Gaps = 18/420 (4%)

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFD  TY++SGGLHGVG+SVVNALS +L  TV R   I+ Q+FS G  +S   
Sbjct: 1   TVLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFG 60

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
              K +   GT I F PD +IF     FD   L K  +  AYL+ ++   +  ++     
Sbjct: 61  VIGKSKK-TGTTIEFWPDDQIFEVT-EFDYEILAKRFRELAYLNPKITINFKDNR----- 113

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE 314
             + + E F+F GG+  ++    +  +L  +  F+   E        VE A+ + +   E
Sbjct: 114 --VGKHESFHFEGGISQFVTDLNKKEALTKAIFFSVDEED-----VNVEVALLYNDTYSE 166

Query: 315 IT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
              S+ N I T +GGTHE+G R+ LTR I  Y E      ++   I  +D+    + ++S
Sbjct: 167 NLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGEDVREGLIAVVS 226

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V + EP+F GQTK KL S   +  V  A  +    Y  +NPIEA  ++   +  +  R  
Sbjct: 227 VKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREA 286

Query: 432 RRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +K RE   +K ++    LPGKLADC       +E+++VEGDSAGGSAKQ R RS QA+L
Sbjct: 287 AKKARELTRKKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAIL 346

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           PLRGKILNV  A  +KI  ++QI +++ A GC     +    LRY K+IIMTDADVDG+H
Sbjct: 347 PLRGKILNVEKARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSH 406


>gi|33187337|gb|AAP97531.1| DNA gyrase subunit B [Campylobacter jejuni subsp. doylei]
          Length = 406

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 166/420 (39%), Positives = 234/420 (55%), Gaps = 18/420 (4%)

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFD  TY++SGGLHGVG+SVVNALS +L  TV R   I+ Q+FS G  +S   
Sbjct: 1   TVLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFG 60

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
              K +   GT I F PD +IF     FD   L K  +  AYL+ ++   +  ++     
Sbjct: 61  VIGKSKK-TGTTIEFWPDDQIFEVT-EFDYEILAKRFRELAYLNPKITINFKDNR----- 113

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE 314
             + + E F+F GG+  ++    +  +L  +  F+   E        VE A+ + +   E
Sbjct: 114 --VGKHESFHFEGGISQFITDLNKKEALTKAIFFSVDEED-----VNVEVALLYNDTYSE 166

Query: 315 IT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
              S+ N I T +GGTHE+G R+ LTR I  Y E      ++   I  +D+    + ++S
Sbjct: 167 NLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGEDVREGLIAVVS 226

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V + EP+F GQTK KL S   +  V  A  +    Y  +NP+EA  ++   +  +  R  
Sbjct: 227 VKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTKYFEENPVEAKAIMNKALMAARGREA 286

Query: 432 RRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +K RE   +K ++    LPGKLADC       +E+++VEGDSAGGSAKQ R RS QA+L
Sbjct: 287 AKKARELTRKKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAIL 346

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           PLRGKILNV  A  +KI  ++QI +++ A GC     +    LRY K+IIMTDADVDG+H
Sbjct: 347 PLRGKILNVEKARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSH 406


>gi|33187289|gb|AAP97507.1| DNA gyrase subunit B [Campylobacter jejuni]
          Length = 406

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 167/420 (39%), Positives = 234/420 (55%), Gaps = 18/420 (4%)

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFD  TY++SGGLHGVG+SVVNALS +L  TV R   I+ Q+FS G  +S   
Sbjct: 1   TVLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNEEIYRQEFSEGKVISEFG 60

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
              K +   GT I F PD +IF     FD   L K  +  AYL+ ++   +  ++     
Sbjct: 61  VIGKSKK-TGTTIEFWPDDQIFEVT-EFDYEILAKRFRELAYLNPKITINFKDNR----- 113

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE 314
             + + E F+F GG+  ++    +  +L  +  F+   E        VE A+ + +   E
Sbjct: 114 --VGKHESFHFEGGISQFVIDLNKKEALTKAIFFSVDEED-----VNVEVALLYNDTYSE 166

Query: 315 IT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
              S+ N I T +GGTHE+G R+ LTR I  Y E      ++   I  +D+    + ++S
Sbjct: 167 NLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGEDVREGLIAVVS 226

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V + EP+F GQTK KL S   +  V  A  +    Y  +NPIEA  ++   +  +  R  
Sbjct: 227 VKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREA 286

Query: 432 RRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +K RE   +K ++    LPGKLADC       +E+++VEGDSAGGSAKQ R RS QA+L
Sbjct: 287 AKKARELTRKKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAIL 346

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           PLRGKILNV  A  +KI  ++QI +++ A GC     +    LRY K+IIMTDADVDG+H
Sbjct: 347 PLRGKILNVEKARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSH 406


>gi|2196834|gb|AAB80834.1| DNA gyrase beta-subunit [Shewanella algae]
          Length = 419

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 162/430 (37%), Positives = 248/430 (57%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T L   GKFD+++Y++SGGLHGVG+SVVNALS++L +T+ R   ++ Q +  G P 
Sbjct: 1   EVIMTVLRPLGKFDHNSYKVSGGLHGVGVSVVNALSEKLQLTIRRDGKVYEQFYKHGEPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            P+++  +  N  GT I F P  + F D   F    L K  +  ++L+  V      +++
Sbjct: 61  EPIKEIGEATN-TGTEIRFWPSQETFTD-TEFHYELLAKRIRELSFLNSGVGIRLVDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             +       E F++ GG+K +L+    N++ ++ ++F    E++     TVE A+ W +
Sbjct: 119 NKD-------ELFHYEGGIKAFLKYLNRNKTPVNKDVFHFSQERED--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R ALTR +  Y E      K   +   DD      
Sbjct: 170 GFQESIFCFTNNIPQRDGGTHLAGFRAALTRNLNNYMEKEGFNKKGKTNATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +  + YL++NP +A  ++  +I+   
Sbjct: 230 AVVSVKVPDPKFSSQTKDKLVSSEVKGAVEQTMGEKLNDYLLENPADAKMIVGKIIDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R  Y  +  RY K+II TDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDVYDPDKTRYHKIIIRTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHILTLL 419


>gi|307939308|gb|ADN95845.1| DNA gyrase B [Hymenobacter antarcticus]
          Length = 440

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 173/446 (38%), Positives = 255/446 (57%), Gaps = 27/446 (6%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD  +Y++SGGLHGVG+S VNALS +L VTV R    + Q++  GIP 
Sbjct: 1   ELIMTVLHAGGKFDKGSYKVSGGLHGVGVSCVNALSTDLKVTVRRNGHKYEQEYKIGIPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
             +++   +  + GT + F PD  IF +   +    +    +  +YL+  ++   +  +E
Sbjct: 61  YDVKEVG-LSEEHGTEVQFLPDATIFTE-TEYRYDTVAGRLRDLSYLNKGIRITLTDRRE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQT-KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
             E  G+   EEFY  GGL+ ++Q    E R  + SE    ++EK GT    VE A+ + 
Sbjct: 119 KLE-GGVFRGEEFYSTGGLRDFVQYLDGEQRPSLLSEPIYVESEKGGTP---VEVALQYN 174

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISA 366
                 + SY N I T EGGTH +G R A+TR +K Y +  +   K  + I  DD     
Sbjct: 175 TSYQENVYSYVNNINTIEGGTHVAGFRSAVTRVLKTYGDKNKLFEKAKVEITGDDFREGL 234

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             ++SV ++EP+F GQTKTKL + +    V + + +    YL +NP +A +++E VI  +
Sbjct: 235 TAVISVKVQEPQFEGQTKTKLGNSEVSGAVNSVVGEILTQYLDENPNQANRIMEKVILAA 294

Query: 427 EERLRRRKQREVNRKTAIRKLRL-PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
           + R+  RK +++ ++  +      PGKLADCS++     EL++VEGDSAGG+AKQ RNR+
Sbjct: 295 KARIAARKAKDMVQRKGVLSSNSLPGKLADCSESDPEICELYLVEGDSAGGTAKQGRNRA 354

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY----------------R 529
            QA+LPLRGKILNV  A   +I  N++I +++ ALG     +                  
Sbjct: 355 FQAILPLRGKILNVEKAQEHRILENEEIKNMITALGVSFNERKSLAFTTDDDGTESGPLN 414

Query: 530 EEDLRYEKVIIMTDADVDGAHIASLL 555
              LRY KVIIMTDADVDG+HI +LL
Sbjct: 415 FSKLRYHKVIIMTDADVDGSHIRTLL 440


>gi|295979453|dbj|BAJ07399.1| DNA gyrase subunit B [Paracoccus sp. Y4]
          Length = 315

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 103/324 (31%), Positives = 167/324 (51%), Gaps = 19/324 (5%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+ +EV+DN +DE +AG+A+ ++V +  +  ++V DNGRGIPV+ HP    
Sbjct: 1   DTDDGSGLHHMVTEVVDNGIDEALAGHADYVQVKIHADNSVSVRDNGRGIPVDMHP-TEG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALSD L + V R       +F +
Sbjct: 60  VSAAEVIMTQLHAGGKFDSNSYKVSGGLHGVGVSVVNALSDWLELRVWRNGKEHYARFEK 119

Query: 187 GIPLSPLEKKEK-VRNKRGTRITFRP-----DPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
           G  +  L    +    + GT + F       DP        +    L    +  A+L+  
Sbjct: 120 GDTVEHLRVVGEAAPGETGTEVRFLASAKTNDPNGTFSNLEYVYKTLETRLRELAFLNSG 179

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
           V+     ++    +         ++ GG++ +++    +++ +  E      E+ G    
Sbjct: 180 VRIILEDERHAEVQRTE-----LFYEGGVREFVKYLDRSKTAVMPEPIFMSGERGGI--- 231

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISI 357
            VE A+ W +     +  + N I   +GGTH +G R ALTR I KYA+ +    K  +  
Sbjct: 232 GVEVAMWWNDSYHETVLPFTNNIPQRDGGTHLAGFRGALTRVIGKYAQDSGIAKKEKVEF 291

Query: 358 ISDDLMISAVGILSVFIREPEFAG 381
             DD       +LSV + +P+F+ 
Sbjct: 292 TGDDAREGLTCVLSVKVPDPKFSS 315


>gi|33187307|gb|AAP97516.1| DNA gyrase subunit B [Campylobacter jejuni]
 gi|33187311|gb|AAP97518.1| DNA gyrase subunit B [Campylobacter jejuni]
          Length = 406

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 167/420 (39%), Positives = 234/420 (55%), Gaps = 18/420 (4%)

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFD  TY++SGGLHGVG+SVVNALS +L  TV R   I+ Q+FS G  +S   
Sbjct: 1   TVLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFG 60

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
              K +   GT I F PD +IF     FD   L K  +  AYL+ ++   +  ++     
Sbjct: 61  VIGKSKK-TGTTIEFWPDDQIFEVT-EFDYEILAKRFRELAYLNPKITINFKDNR----- 113

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE 314
             + + E F+F GG+  ++    +  +L  +  F+   E        VE A+ + +   E
Sbjct: 114 --VGKHESFHFEGGISQFVIDLNKKEALTKAIFFSVDEED-----VNVEVALLYNDTYSE 166

Query: 315 IT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
              S+ N I T +GGTHE+G R+ LTR I  Y E      ++   I  +D+    + ++S
Sbjct: 167 NLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGEDVREGLIAVVS 226

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V + EP+F GQTK KL S   +  V  A  +    Y  +NPIEA  ++   +  +  R  
Sbjct: 227 VKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREA 286

Query: 432 RRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +K RE   +K ++    LPGKLADC       +E+++VEGDSAGGSAKQ R RS QA+L
Sbjct: 287 AKKARELTRKKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAIL 346

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           PLRGKILNV  A  +KI  ++QI +++ A GC     +    LRY K+IIMTDADVDG+H
Sbjct: 347 PLRGKILNVEKARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSH 406


>gi|33187301|gb|AAP97513.1| DNA gyrase subunit B [Campylobacter jejuni]
          Length = 406

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 168/420 (40%), Positives = 234/420 (55%), Gaps = 18/420 (4%)

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFD  TY++SGGLHGVG+SVVNALS +L  TV R   I+ Q+FS G  +S   
Sbjct: 1   TVLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFG 60

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
              K +   GT I F PD +IF     FD   L K  +  AYL+ ++   +  ++     
Sbjct: 61  VIGKSKK-TGTTIEFWPDDQIFEVT-EFDYEILAKRFRELAYLNPKITINFKDNR----- 113

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE 314
             + + E F+F GG+  ++    +  +L  +  F+   E        VE A+ + +   E
Sbjct: 114 --VGKHESFHFEGGISQFVTDLNKKEALTKAIFFSVDEED-----VNVEVALLYNDTYSE 166

Query: 315 IT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
              S+ N I T +GGTHE+G R+ LTR I  Y E      ++   I  +D+    + I+S
Sbjct: 167 NLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGEDVREGLIAIVS 226

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V + EP+F GQTK KL S   +  V  A  +    Y  +NPIEA  ++   +  +  R  
Sbjct: 227 VKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREA 286

Query: 432 RRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +K RE   +K ++    LPGKLADC       +E+++VEGDSAGGSAKQ R RS QA+L
Sbjct: 287 AKKARELTRKKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAIL 346

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           PLRGKILNV  A  +KI  ++QI +++ A GC     +    LRY K+IIMTDADVDG+H
Sbjct: 347 PLRGKILNVEKARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSH 406


>gi|307939326|gb|ADN95854.1| DNA gyrase B [Hymenobacter fastidiosus]
          Length = 432

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 171/436 (39%), Positives = 252/436 (57%), Gaps = 21/436 (4%)

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           +T LHAGGKFD  +Y++SGGLHGVG+S VNALS +L VTV R   ++ Q++  G+P   +
Sbjct: 3   MTVLHAGGKFDKDSYKVSGGLHGVGVSCVNALSSDLKVTVRRNGHMYEQEYKIGVPQYAV 62

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           ++        GT + F PD  IF +   +    +    +  +YL+  ++   +  +E  E
Sbjct: 63  KEIGDTEEH-GTEVEFLPDASIFTESV-YKYETVANRLRELSYLNKGIRITLTDRRE-KE 119

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP 313
             G    EEF+  GGL  ++Q     R+++       ++EK GT    VE A+ + +   
Sbjct: 120 DDGSFLYEEFFSHGGLSEFVQYLDSGRTVLMPAPIHVESEKGGTP---VEVALQYNDSYQ 176

Query: 314 EI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGIL 370
           E   SY N I T EGGTH +G R ALTR +K YA+ +    K  + ++ DD       ++
Sbjct: 177 EHIFSYVNNINTIEGGTHVAGFRSALTRTLKAYADKSGLLEKAKVEVLGDDFREGLTAVI 236

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV ++EP+F GQTKTKL + D    V  A+ +  + YL +NP EA  ++E VI  ++ R+
Sbjct: 237 SVKVQEPQFEGQTKTKLGNSDVSGAVNTAVGEILNQYLQENPKEARIIVEKVILAAKARV 296

Query: 431 RRRKQREVNRKTAIRKLRL-PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK RE+ ++ ++      PGKLADCS++     EL++VEGDSAGG+AKQ RNR+ QA+
Sbjct: 297 AARKAREMVQRKSVLGSNSLPGKLADCSESDPAICELYLVEGDSAGGTAKQGRNRAFQAI 356

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY-----------REEDLRYEKV 538
           LPLRGKILNV  A   +I  N++I +++ ALG     +              + LRY K+
Sbjct: 357 LPLRGKILNVEKAQEHRIYENEEIRNMITALGVSFEKKTDEDDGSTTRSLNVDKLRYHKI 416

Query: 539 IIMTDADVDGAHIASL 554
           IIMTDADVDG+HI +L
Sbjct: 417 IIMTDADVDGSHIRTL 432


>gi|33187279|gb|AAP97502.1| DNA gyrase subunit B [Campylobacter jejuni]
 gi|33187281|gb|AAP97503.1| DNA gyrase subunit B [Campylobacter jejuni]
 gi|33187293|gb|AAP97509.1| DNA gyrase subunit B [Campylobacter jejuni]
 gi|33187297|gb|AAP97511.1| DNA gyrase subunit B [Campylobacter jejuni]
 gi|33187303|gb|AAP97514.1| DNA gyrase subunit B [Campylobacter jejuni]
 gi|33187309|gb|AAP97517.1| DNA gyrase subunit B [Campylobacter jejuni]
 gi|33187329|gb|AAP97527.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni]
          Length = 406

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 169/420 (40%), Positives = 234/420 (55%), Gaps = 18/420 (4%)

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFD  TY++SGGLHGVG+SVVNALS +L  TV R   I+ Q+FS G  +S   
Sbjct: 1   TVLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFG 60

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
              K +   GT I F PD +IF     FD   L K  +  AYL+ ++   +  ++     
Sbjct: 61  VIGKSKK-TGTTIEFWPDDQIFEVT-EFDYEILAKRFRELAYLNPKITINFKDNR----- 113

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE 314
             + + E F+F GG+  ++    +  +L  +  F+   E        VE A+ + +   E
Sbjct: 114 --VGKHESFHFEGGISQFVTDLNKKEALTKAIFFSVDEED-----VNVEVALLYNDTYSE 166

Query: 315 IT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
              S+ N I T +GGTHE+G R+ LTR I  Y E      ++   I  DD+    + I+S
Sbjct: 167 NLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGDDVREGLIAIVS 226

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V + EP+F GQTK KL S   +  V  A  +    Y  +NPIEA  ++   +  +  R  
Sbjct: 227 VKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREA 286

Query: 432 RRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +K RE   +K ++    LPGKLADC       +E+++VEGDSAGGSAKQ R RS QA+L
Sbjct: 287 AKKARELTRKKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAIL 346

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           PLRGKILNV  A  +KI  ++QI +++ A GC     +    LRY K+IIMTDADVDG+H
Sbjct: 347 PLRGKILNVEKARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSH 406


>gi|33187299|gb|AAP97512.1| DNA gyrase subunit B [Campylobacter jejuni]
          Length = 406

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 169/420 (40%), Positives = 234/420 (55%), Gaps = 18/420 (4%)

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFD  TY++SGGLHGVG+SVVNALS +L  TV R   I+ Q+FS G  +S   
Sbjct: 1   TVLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFG 60

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
              K +   GT I F PD +IF     FD   L K  +  AYL+ ++   +  ++     
Sbjct: 61  VIGKSKK-TGTTIEFWPDDQIFEVT-EFDYEILAKRFRELAYLNPKITINFKDNR----- 113

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE 314
             + + E F+F GG+  ++    +  +L  +  F+   E        VE A+ + +   E
Sbjct: 114 --VGKHESFHFEGGISQFVIDLNKKEALTKAIFFSVDEED-----VNVEVALLYNDTYSE 166

Query: 315 IT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
              S+ N I T +GGTHE+G R+ LTR I  Y E      ++   I  DD+    + I+S
Sbjct: 167 NLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGDDVREGLIAIVS 226

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V + EP+F GQTK KL S   +  V  A  +    Y  +NPIEA  ++   +  +  R  
Sbjct: 227 VKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREA 286

Query: 432 RRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +K RE   +K ++    LPGKLADC       +E+++VEGDSAGGSAKQ R RS QA+L
Sbjct: 287 AKKARELTRKKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAIL 346

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           PLRGKILNV  A  +KI  ++QI +++ A GC     +    LRY K+IIMTDADVDG+H
Sbjct: 347 PLRGKILNVEKARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSH 406


>gi|119369960|gb|ABL67994.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 160/430 (37%), Positives = 240/430 (55%), Gaps = 18/430 (4%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGG+FD++TY++SGGLHGVG+SVVNALS  L + + R    + Q +  G+P 
Sbjct: 1   EVIMTVLHAGGEFDDNTYKVSGGLHGVGVSVVNALSGVLKLAIKRNGQTYEQVYHDGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL+         GTR+ F P P+ F +   F    L K  +  ++L+  V+     ++ 
Sbjct: 61  APLQVSGSAEG-TGTRVHFWPSPQTFNNIH-FSFDTLAKRLRELSFLNSGVRILLQDERS 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWC 309
                   + E F + GGL  ++     +++ ++      G+ E  G     VE A+ W 
Sbjct: 119 Q-------QGELFQYEGGLSAFVDYLNTHKTPLNQVFHFNGRAEDSGI---GVEIALQWN 168

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISA 366
           +     +  + N I   +GGTH  G R ALTR +  Y E      K  I+   +D     
Sbjct: 169 DGYQEAVYCFTNNIPQRDGGTHLQGFRTALTRTLNTYMEREGYLKKEKINTSGEDAREGL 228

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-R 425
             I+SV + +P+F+ QTK KLVS +  + V   + + F+ YL++NP     ++  +I+  
Sbjct: 229 TAIVSVKVPDPKFSSQTKDKLVSSEVTQAVATLMNERFEEYLLENPQAGKSIISKMIDAA 288

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
                 R+ +    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR 
Sbjct: 289 RAREAARKAREMTRRKGALDIAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRR 348

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
            QA+LPL+GKILNV  A  +K+ ++ ++  L+ ALGC   R +Y  + LRY K+IIMTDA
Sbjct: 349 MQAILPLKGKILNVEKARFDKMLSSAEVGTLITALGCGIGRDEYNPDKLRYHKIIIMTDA 408

Query: 545 DVDGAHIASL 554
           DVDG+HI +L
Sbjct: 409 DVDGSHIRTL 418


>gi|253826388|gb|ACT36497.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 155/415 (37%), Positives = 232/415 (55%), Gaps = 15/415 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKF    Y++SGGLHGVG+S VNALS +L V V R+  ++ Q++  G P   +++  
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSDVNALSKKLEVQVKREGKVYQQEYRCGAPQYDIKEIG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +     GT++TF PD +IF +   +D   L    +  A+L+  ++   + ++        
Sbjct: 61  E-SEMTGTQVTFWPDEEIFTETTEYDFDTLQSRIRELAFLNKGIEIVLTDER-------T 112

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
              + F + GG+ ++++   +NR  +       + EK       VE A+ + +     I 
Sbjct: 113 DISQTFIYEGGIISFVEHLNQNREPVHQPPIYVEGEKDHIQ---VEVALQYNDSYTENIY 169

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
           S+ N I T EGGTHESG + ALTR + +YA       +   ++  DD+      I+SV I
Sbjct: 170 SFANNINTHEGGTHESGFKSALTRILNEYARKYNAIKESDANLSGDDVREGLTAIISVKI 229

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRR 433
            +P+F GQTKTKL + + +  VE+   +  + +L +NP  A K++E  V  +      R+
Sbjct: 230 PDPQFEGQTKTKLGNSEVRGIVESLFAEKLEEFLQENPAIAKKIVEKGVQAQRAREAARK 289

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            +    RK+A+    LPGKLADCS   A  +E++IVEGDSAGGSAKQ R+R  QA+LPLR
Sbjct: 290 ARELTRRKSALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLR 349

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           GKILNV  A  +KI +N +I  ++ ALG      +     RY  +IIMTDADVDG
Sbjct: 350 GKILNVEKARLDKILSNAEIRAIITALGTGIGEDFDISKARYHNIIIMTDADVDG 404


>gi|148470198|gb|ABQ66047.1| gyrase b [uncultured bacterium]
 gi|148971367|gb|ABR20221.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 169/430 (39%), Positives = 243/430 (56%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y+ISGGLHGVG+SVVNALS  L +T+ R       +F  G  +
Sbjct: 1   EVIMTVLHAGGKFDSNSYKISGGLHGVGVSVVNALSTWLKLTIYRDGKRHFMEFREGDAV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL         RGT I F P P  FG    F    L +  +  ++L+  V       + 
Sbjct: 61  APLAVVGDSPK-RGTEIHFLPSPLTFGT-IEFHYDILARRLRELSFLNNGVSILLKDLRH 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       E F F GG++ +++     R+++   +F    EK+G    TVE A+ W E
Sbjct: 119 GQE-------ENFSFNGGVRGFVEYLNRTRTVLHPTVFHSVGEKEGI---TVEVAMQWNE 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH + LR A+TR +  + E  +   K  +    DD+     
Sbjct: 169 SYQENVLCFTNNIPQRDGGTHLTALRAAMTRTLNHFIEENELARKAKVETTGDDMREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE  + D    +L++ P EA  ++  +IE + 
Sbjct: 229 CVLSVKVPDPKFSSQTKEKLVSSEVRPAVEEVVSDQMRSFLLEKPAEARIIVGKIIEAAR 288

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK RE   RK A+  L LPGKLADC +      E+++VEGDSAGGSAKQ R+R  
Sbjct: 289 AREAARKARELTRRKGALDGLGLPGKLADCQEKDPAQCEIYLVEGDSAGGSAKQGRDRRF 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q+I+ L+ ALG          E +RY ++IIMTDAD
Sbjct: 349 QAILPLKGKILNVERARFDKLVSSQEIVTLITALGTGIGKDEYSPEKVRYHRIIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|183987576|gb|ACC65778.1| topoisomerase II [Pleurotus columbinus]
          Length = 692

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 114/546 (20%), Positives = 217/546 (39%), Gaps = 37/546 (6%)

Query: 154 LHGVGISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEK-VRNKRGTRITFR 210
            HG G  + N  S E  +  A       +SQ +++ +      K  K  RN+  TR+TF+
Sbjct: 1   RHGYGAKLANIYSLEFTIETADKVNGKKYSQTWTKNMTQVGKAKITKNSRNEEYTRVTFK 60

Query: 211 PDPKIFGDKAGFDAA--RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           P+   FG           L K     A     VK   + ++    K    ++    +   
Sbjct: 61  PELTRFGMTHIDPDTAGLLRKRVYDMAGTVKDVKVYLNDERL---KIKTFKQYVEMYIEA 117

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGG 328
                +      +     +   +           E A A  +   +  S+ N+I T +GG
Sbjct: 118 ATAGAKENSGGAAQAKPTVIYEQIS------PRWEVAFATSDGTFQQVSFANSISTIKGG 171

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           TH + +   L++ I  +       +A ++    +       ++  I  P F  QTK  L 
Sbjct: 172 THVNYIADQLSKSIIAHIAKKN--KAATVKPAQVKNHMWIFVNALIENPTFDSQTKETLT 229

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKL 447
               +     AL + F   + +     + +++ V+  ++ +  ++ ++   +++  +  +
Sbjct: 230 LPAGKFGSRPALSEEFMKKVQK-----SSIIDQVLNWAKFKADQQIKKTDGSKRNRLTGM 284

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGS 504
                  +     A    L + EGDSA   A        R N  V PLRGK+LNV  A  
Sbjct: 285 AKLSDANNAGTKNAEKCTLILTEGDSAKSLAVAGLAVVGRDNFGVFPLRGKLLNVREARH 344

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           ++I  N++I ++ + +G +   +Y     LRY +++IMTD D DG+HI  LL+ F     
Sbjct: 345 DQIMKNEEIQNIKKIMGLQHNKEYTNVSSLRYGRLMIMTDQDHDGSHIKGLLINFLDHFY 404

Query: 564 YDLIEQK-HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
             L++    L     P+ R+T+G +          +  LEE       K     +KGLG 
Sbjct: 405 PSLLKVPEFLVEFVTPIVRVTKGNQRKNFFTIPEYETWLEETPDS--KKWTAKYYKGLGT 462

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE--RASF 680
              +  +E      K  +    +  +  +L     + +K    KAD+R +++++    ++
Sbjct: 463 SSDADAREYFSRMGKHMIPFAIMEDEERAL--IDLAFSK---KKADDRKEWLRQFKPGTY 517

Query: 681 ID-DVG 685
           +D ++ 
Sbjct: 518 LDHNID 523


>gi|119369978|gb|ABL68003.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 420

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 152/430 (35%), Positives = 244/430 (56%), Gaps = 15/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+  ++ Q++  G P+
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSTKLTLAIRREGELWEQEYHCGDPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+  K   +  RGT + F PDP++F     F  ARL K  +  AYL+  +    + ++ 
Sbjct: 61  APIAAKGPAKG-RGTTVHFWPDPEVFES-TEFSFARLEKRFRELAYLNDGLTILLNDERG 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             ++ G+     +++ GG+  ++    ++R  +   +   K ++ G     V+ AI W +
Sbjct: 119 DRKREGV-----YHYEGGVAAFVLDINKSREAVHPTVIRIKGDRDGAM---VDTAIQWND 170

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R A+TR +  Y E      K  ++I + D+     
Sbjct: 171 GYNESVFPFTNNIPQVDGGTHLTGFRSAMTRVLGGYMEREGIATKAKVTIDAADMREGMT 230

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERS 426
            +LSV + +P+F+ QTK KLVS + +  VE+ + +    +L + P EA  +   ++    
Sbjct: 231 AVLSVKVPDPKFSSQTKDKLVSSEVRPIVESVIAEGVGTFLDEKPKEAQAICAKIVEAAK 290

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +     K A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R  
Sbjct: 291 AREAARKARDLTRHKGALDIANLPGKLADCQEKDPALCEIYLVEGDSAGGSAKQGRDRKF 350

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +++  + +I  L+ AL             LRY ++II+TDAD
Sbjct: 351 QAILPLKGKILNVERARFDRMLESDEIGTLITALSTGIGQDEFNAGKLRYHRIIIITDAD 410

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 411 VDGSHIRTLL 420


>gi|222872663|gb|EEF09794.1| predicted protein [Populus trichocarpa]
          Length = 167

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 83/166 (50%), Positives = 118/166 (71%), Gaps = 2/166 (1%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           +++ ++NY A SI++L+GLE VR RPGMYIG TD+   LHH+  EV+DNA+DE +AGY  
Sbjct: 2   SENTTENYGAGSIKVLKGLEAVRTRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCK 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V D+GRGIPV+ HP+    S  ++I+T LHAGGKFD+++Y++SGGLH
Sbjct: 62  DIIVTIHADNSVSVQDDGRGIPVDIHPE-EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLH 120

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           GVGISVVNALSD+L +T+ RQ  +  Q +  G P  PL    +   
Sbjct: 121 GVGISVVNALSDKLQLTIRRQGKVHEQFYHLGDPQEPLSVIGETEK 166


>gi|295979449|dbj|BAJ07397.1| DNA gyrase subunit B [Caulobacter crescentus CB15]
          Length = 318

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 107/328 (32%), Positives = 172/328 (52%), Gaps = 24/328 (7%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DNA+DE +AG+A  ++V L+ +G +TV D+GRGIPV+ H +   
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHATKVQVILNADGSVTVTDDGRGIPVDMH-EGEG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALSD L + + R   +   +F R
Sbjct: 60  VSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLELLIHRNGKVHQMRFER 119

Query: 187 GIPLSPLEKKEKV----------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAY 236
           G  ++ L+                   GT +TF P    F     FD   L    +  A+
Sbjct: 120 GDAVTSLKVTGDSPVRTEGPKAGETLTGTEVTFFPSKDTF-AFIEFDRKTLEHRLRELAF 178

Query: 237 LSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG 296
           L+  V   +   ++       P +E+ ++ GG++ +++   + ++ +       K  K  
Sbjct: 179 LNSGVTIWFKDHRD-----VEPWEEKLFYEGGIEAFVRHLDKAKTPLLKAPIAVKGVKDK 233

Query: 297 THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKR 353
                ++ A+ W +    ++  + N I   +GGTH S  R ALTR I  YAE +    K 
Sbjct: 234 V---EIDLALWWNDSYHEQMLCFTNNIPQRDGGTHLSAFRAALTRIITSYAESSGILKKE 290

Query: 354 AISIISDDLMISAVGILSVFIREPEFAG 381
            +S+  +D       +LSV + +P+F+ 
Sbjct: 291 KVSLGGEDSREGLTCVLSVKVPDPKFSS 318


>gi|29652769|gb|AAO87354.1| DNA gyrase B [Listeria monocytogenes]
          Length = 208

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 92/204 (45%), Positives = 126/204 (61%), Gaps = 2/204 (0%)

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 7   RKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILN 66

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 67  VEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTL 126

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+K
Sbjct: 127 FYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYK 184

Query: 619 GLGEMLASQLKETAMDANKRTLLR 642
           GLGEM   QL +T M+   RTLL+
Sbjct: 185 GLGEMNPEQLWDTTMNPEHRTLLQ 208


>gi|119369924|gb|ABL67976.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 159/430 (36%), Positives = 250/430 (58%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LH GGKFD S+Y++SGGLHGVG+SVVNALS+ L + + R   +++Q++  G P 
Sbjct: 1   EVIMTVLHGGGKFDASSYKVSGGLHGVGVSVVNALSETLQLRIFRDGYVWTQEYHDGEPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+ +  +   K G+ I F+P P++F D   F    + K  +  A+L+  V      ++ 
Sbjct: 61  APVAR-GEASRKHGSTIRFKPSPQVFADTH-FHFEIIAKRLRELAFLNSGVHITLLDERG 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       E F++ GG++ +++    +++ I   + T   E+ G     VE A+ W E
Sbjct: 119 GRE-------EVFHYEGGIRAFVEHLNRSKTAIHPTVITLNGERDGI---VVEAALQWNE 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR + +Y E      K  + +  +D      
Sbjct: 169 GYSEAVLCFTNNIPQTDGGTHLAGFRGALTRTLNQYMEREGIIAKAKVVVSGEDTREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE+++ +    +L ++P EA  +   ++E + 
Sbjct: 229 AVLSVKVPDPKFSSQTKEKLVSSEVKPIVESSMSEALTIFLDEHPKEAQAIAAKIVEAAR 288

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   R+ RE   RK A+    LPGKLADC +      E+++VEGDSAGGSAK+ R+R +
Sbjct: 289 AREAARRARELTRRKGALDIANLPGKLADCQEKDPAKCEIYLVEGDSAGGSAKRGRDRRH 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++ +I  L+ ALG    +   +   LRY +VII+TDAD
Sbjct: 349 QAILPLKGKILNVERARFDKMLSSDEIGTLITALGTGIGAGDFDVAKLRYHRVIIITDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|56409820|emb|CAH65719.1| DNA gyrase [Vibrio aestuarianus]
          Length = 421

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 162/430 (37%), Positives = 247/430 (57%), Gaps = 14/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LH GGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R+  IF Q +  G P 
Sbjct: 1   EVIMTVLHGGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIKRKGEIFQQIYHHGEPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    K   + GTRI F P  + F +   F    L K  +  ++L+  V    + ++E
Sbjct: 61  APLAGIGKT-EQTGTRIRFWPSEETFTN-XEFHYEILAKRLRELSFLNSGVSINLTDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + + F F GG++ +++     ++ I+  IF     ++     TVE  +   +
Sbjct: 119 ------EXKSDHFMFEGGIRAFVEHLXRKKTPIAXRIFFFXXXRE-EDGITVEVPMQXND 171

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR +  + +      K   +   DD      
Sbjct: 172 GFQEGVYCFXNNIPQRDGGTHLAGFRGALTRTLNNFMDKEGXSKKAQAATSGDDAREGLT 231

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +L++NP EA  +   +I+   
Sbjct: 232 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMSEKLSEFLIENPTEAKIVCGKIIDAAR 291

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR N
Sbjct: 292 AREAARKARDMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKN 351

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIM DAD
Sbjct: 352 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMXDAD 411

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 412 VDGSHIRTLL 421


>gi|209863969|gb|ACI88902.1| GyrB [Ferroplasma thermophilum]
          Length = 441

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 161/448 (35%), Positives = 236/448 (52%), Gaps = 30/448 (6%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD ++Y++SGGLHGVG+S VNALS  L + V R+  +   +F+RG   
Sbjct: 1   EVIMTVLHAGGKFDQNSYKVSGGLHGVGVSCVNALSSWLRLIVRREGKVHQLEFARGFVQ 60

Query: 191 SP-----------LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
           +              K     +KRGT + F PD +IF     F    L K  +  ++L+ 
Sbjct: 61  NRIIEQVDGVDVSPMKIVGTTDKRGTEVHFLPDTQIFQQNNDFHYEILAKRLRELSFLNN 120

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            V+     ++   E         F   GG+  +++    N+ ++    F    E+     
Sbjct: 121 GVRIRLKDERTGKEDD-------FAGSGGVMGFVEFINANKKILHPNTFYAAGERPAETY 173

Query: 300 G-------TVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ- 350
           G        VE ++ W +  N  +  + N I   +GGTH +GLR A+TR I KY E  + 
Sbjct: 174 GGIPGTSIGVEVSMQWNDGFNESVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIEANEI 233

Query: 351 -NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
             K+ + +  DD+      +LSV + EP+F+ QTK KLVS + +  VE+ +      +L 
Sbjct: 234 AKKQKVEVTGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVAKVLGEFLE 293

Query: 410 QNPIEAT-KLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFI 468
           + P +A    L+ V         R+ +    RK  +  + LPGKLADC +      E++I
Sbjct: 294 ERPNDAKLICLKIVEAVRAREAARKARDMTRRKGVLDGVGLPGKLADCQERDPAKCEIYI 353

Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528
           VEGDSAGGSAKQ R+R  QA+LPLRGK+LNV  A  +K+  ++QI  L+ ALG       
Sbjct: 354 VEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARFDKLLTSEQITTLITALGTSIGKDD 413

Query: 529 RE-EDLRYEKVIIMTDADVDGAHIASLL 555
                LRY ++IIMTDADVDG+HI +LL
Sbjct: 414 FNLAKLRYHRIIIMTDADVDGSHIRTLL 441


>gi|56409810|emb|CAH65714.1| DNA gyrase [Vibrio aestuarianus]
          Length = 421

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 159/430 (36%), Positives = 244/430 (56%), Gaps = 14/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LH GGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R+  IF Q +  G+P 
Sbjct: 1   EVIMTVLHGGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIKRKGEIFQQIYHHGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    K     GTRI F P  + F +   F    L K  +  ++L+  V    + ++E
Sbjct: 61  APLAVIGKTEE-TGTRIRFWPSEETFTN-IEFHYEILAKRLRELSFLNSGVSIKLTDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + + F F GG++ +++    N++ I  +IF     ++     TVE A+ W +
Sbjct: 119 ------EDKSDHFMFEGGIRAFVEHLNRNKTPIHQKIFYFDHTRE-EDGITVEVAMQWND 171

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR +  + +      K   +   DD      
Sbjct: 172 GFQEGVYCFTNNIPQRDGGTHLAGFRGALTRTLTNFMDKEGYSKKAQAATSGDDAREGLT 231

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +L++NP EA  +   +I+   
Sbjct: 232 AVVSVKVPDPKFSSQTKXKLVSSEVKSAVESAMSEKLSEFLIENPTEAKIVCGKIIDAAR 291

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLAD  +     +EL+IVEGDSAGGSA Q R R N
Sbjct: 292 AREAARKARDMTRRKGALDLAXLPGKLADXQEKDPALSELYIVEGDSAGGSAXQGRXRKN 351

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKIL V     +K+ ++Q++  L+ ALGC   R +   + LRY  +IIM DAD
Sbjct: 352 QAILPLKGKILXVEKXRFDKMLSSQEVATLITALGCGIGRDEXNPDKLRYHNIIIMXDAD 411

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 412 VDGSHIRTLL 421


>gi|326379140|gb|ADZ57483.1| DNA topoisomerase IV subunit B [Flavobacterium psychrophilum]
          Length = 455

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 129/491 (26%), Positives = 214/491 (43%), Gaps = 56/491 (11%)

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
                +       +    ++KM ++  YL+  +   ++ +K             F+   G
Sbjct: 2   SFIADEAIFKNYKYRNEYIIKMLKNYCYLNTGLTIIYNGEK-------------FFSNNG 48

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGG 328
           LK  L+  +    ++   I              +    +  + + E  S+ N   T +GG
Sbjct: 49  LKDLLEENIAEEDMVYPIIHLLG------DDIEIAITHSKTQYSEEYYSFVNGQNTTQGG 102

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           TH    R ++ + IK++             + D+  S V  + V + EP F  QTKTKL 
Sbjct: 103 THLGAFRESIVKTIKEFYN-------KPFEASDIRKSIVSAIVVRVEEPVFESQTKTKLG 155

Query: 389 SLDA-------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           S D        +  V + ++   D++L +NP  A  LL  +++   ER      R++ + 
Sbjct: 156 STDMGPDLPSVRTFVNDFIKTKLDNFLHKNPETADLLLRKILQAERERKELSGIRKLAKD 215

Query: 442 TAIRKLRLPGKLADCSQNIAH-------GTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
            A +      KL DC  ++          + LFI EGDSA GS  ++R+ + QAV  LRG
Sbjct: 216 RAKKSNLHNKKLRDCRVHLTDAKNARSLESTLFITEGDSASGSITKSRDVNTQAVFSLRG 275

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           K LN      + +  N++   L  AL          EDLRY  ++I TDADVDG HI  L
Sbjct: 276 KPLNSYGMSKKIVYENEEFNLLQAALNIE----ESMEDLRYNNIVIATDADVDGMHIRLL 331

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           L+TFF Q   ++I++ HL+++  PLFR+    +++Y + E+ K+  +E+     K K EI
Sbjct: 332 LITFFLQFFPEMIKEGHLYILQTPLFRVRNKKETIYCYSEQEKRDAIEKL----KPKPEI 387

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
           +RFKGLGE+   + K          L  V ++K        +  +   MG    +R  FI
Sbjct: 388 TRFKGLGEISPDEFKNFIG--ETIRLDPVMLDKST----SIEKLLEFYMGKNTPDRQTFI 441

Query: 675 QERASFIDDVG 685
                   ++ 
Sbjct: 442 INNLKV--ELD 450


>gi|301598497|pdb|3IG0|A Chain A, Crystal Structure Of The Second Part Of The Mycobacterium
           Tuberculosis Dna Gyrase Reaction Core: The Toprim Domain
           At 2.1 A Resolution
 gi|307776504|pdb|3M4I|A Chain A, Crystal Structure Of The Second Part Of The Mycobacterium
           Tuberculosis Dna Gyrase Reaction Core: The Toprim Domain
           At 1.95 A Resolution
          Length = 242

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 90/232 (38%), Positives = 131/232 (56%), Gaps = 10/232 (4%)

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +EL++VEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ 
Sbjct: 15  TDPRKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIIT 74

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALG     ++    LRY K+++M DADVDG HI++LLLT  ++ M  LIE  H+FL  PP
Sbjct: 75  ALGTGIHDEFDIGKLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPP 134

Query: 579 LFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIE----ISRFKGLGEMLASQLKETAM 633
           L+++        +A+ +  +  +LE   K GK KI     I R+KGLGEM A +L ET M
Sbjct: 135 LYKLKWQRSDPEFAYSDRERDGLLEAGLKAGK-KINKEDGIQRYKGLGEMDAKELWETTM 193

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           D + R L +V ++          +  + LMG   D R  FI   A  +  + 
Sbjct: 194 DPSVRVLRQVTLDD----AAAADELFSILMGEDVDARRSFITRNAKDVRFLD 241


>gi|148616474|gb|ABQ96980.1| GyrB [Nocardiopsis synnemataformans]
          Length = 420

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 157/426 (36%), Positives = 232/426 (54%), Gaps = 10/426 (2%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD  +Y +SGGLHGVG+SVVNALS  L V +     ++ Q++    P 
Sbjct: 1   EVIMTVLHAGGKFDGKSYAVSGGLHGVGVSVVNALSTALEVEIRLHGHVWRQRYEMTAPT 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
             L K  +  ++ GT+ITF PD  IF     F    L +  Q  A+L+  +      ++ 
Sbjct: 61  GELVK-GESTDETGTQITFWPDGGIFETTT-FSFETLARRMQEMAFLNKGLSITIRDER- 117

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                G P    F++  GL  Y++     +    + I + + + +G    +VE A+ W +
Sbjct: 118 PEHTDGGPTVNTFHYEEGLSDYVRHINAKKEPAHASIISFEEDGEGI---SVEVAMQWNQ 174

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                + ++ NTI T EGGTHE G R ALT  + +YA   +   ++  ++  DD+     
Sbjct: 175 SYTSSVHTFANTINTAEGGTHEEGFRSALTTLVNRYARDQKLLREKDDNLTGDDIREGLT 234

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERS 426
            I+SV + +P+F GQTKTKL + +A+  V+    +    +  +NP EA  ++  V     
Sbjct: 235 AIISVKMADPQFEGQTKTKLGNTEAKSFVQKVTNEHLRDWFERNPGEAKDIVSKVSQAAR 294

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RKT +    LPGKL+DC        E++IVEGDSAGGSAK  RN  N
Sbjct: 295 ARVAARQARDLTRRKTLLETTSLPGKLSDCQSTNPEECEVYIVEGDSAGGSAKGGRNPHN 354

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADV 546
           QA+LP+RGKILNV  +  ++I  N ++  ++ ALG      +  E LRY KVI+MTDADV
Sbjct: 355 QAILPIRGKILNVEKSRIDRILKNTEVQAIITALGTGIHEDFDAEKLRYHKVILMTDADV 414

Query: 547 DGAHIA 552
           DG+HI 
Sbjct: 415 DGSHIR 420


>gi|119369980|gb|ABL68004.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 165/430 (38%), Positives = 243/430 (56%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD S+Y++SGGLHGVG+SVVNALSD L + + R   +  Q++  G PL
Sbjct: 1   EVIMTVLHAGGKFDASSYKVSGGLHGVGVSVVNALSDYLLLIIHRDGKVHRQEYRLGDPL 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL        +RGT I F+P  +IF     F+   L K  +  ++L+  V+     ++E
Sbjct: 61  APLAPVGP-SEQRGTTIRFKPSAQIF-THIQFNHDILAKRLRELSFLNSGVRIELIDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                     + F   GGL+ +++    +R+ +   I   KT+       T+E A+ W +
Sbjct: 119 NT-------SDVFQHEGGLQAFVKYLNRSRTPVHESIPWFKTQDGPV---TIEVALQWND 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMISAV 367
                +  Y N I   +GGTH +G R ALTR +  Y   E++  K  +    DD      
Sbjct: 169 SYQESMFCYTNNIPQKDGGTHLAGFRSALTRTLNDYIEKEMSAKKDKVPTTGDDAREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERS 426
            ILSV + +P+F+ QTK KLVS + +  VE A+      +L+++P +A  ++  ++    
Sbjct: 229 AILSVKLPDPKFSSQTKDKLVSSEVKGIVEAAVSAKLQDFLLEHPQDAKAIIAKMLEAAR 288

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +E+FIVEGDSAGGSAKQ R+R  
Sbjct: 289 AREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSEIFIVEGDSAGGSAKQGRDRRT 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++ ++  L+ ALGC       +   LRY +VIIMTDAD
Sbjct: 349 QAILPLKGKILNVEKARFDKMLSSAEVGTLITALGCGIGKDDFDLAKLRYHRVIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|148470278|gb|ABQ66086.1| gyrase b [uncultured bacterium]
          Length = 420

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 153/429 (35%), Positives = 241/429 (56%), Gaps = 15/429 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALS +L + + R+  ++ Q++  G P+
Sbjct: 1   EVIMTVLHAGGKFDENSYKVSGGLHGVGVSVVNALSTKLTLAIRREGELWEQEYHCGDPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+  K   +   GT + F PDP++F     F  ARL K  +  AYL+       + ++ 
Sbjct: 61  APIAAKGPAKG-TGTTVHFWPDPEVFES-TEFSFARLEKRFRELAYLNDGSTILLNDERG 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             ++ G+     + + GG+  ++    ++R  +   +   K ++ G     V+ AI W +
Sbjct: 119 DRKREGV-----YLYEGGVAAFVLDINKSREAVHPTVIRIKGDRDGVM---VDTAIQWND 170

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R A+TR +  Y E      K  ++I + D+     
Sbjct: 171 GYNESVFPFTNNIPQADGGTHLTGFRSAMTRVLGGYMEREGIATKAKVTIDAADMREGMT 230

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERS 426
            +LSV + +P+F+ QTK KLVS + +  VE+ + +    +L + P EA  +   ++    
Sbjct: 231 AVLSVKVPDPKFSSQTKDKLVSSEVRPIVESVIAEGVGTFLDEKPKEAQAICAKIVEAAK 290

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R  
Sbjct: 291 AREAARKARDITRRKGALDIANLPGKLADCQEKDPALCEIYLVEGDSAGGSAKQGRDRKF 350

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +++  + +I  L+ ALG            LRY ++IIMTDAD
Sbjct: 351 QAILPLKGKILNVERARFDRMLESDEIGTLITALGTGIGQDEFNAGKLRYHRIIIMTDAD 410

Query: 546 VDGAHIASL 554
           VDG+HI +L
Sbjct: 411 VDGSHIRTL 419


>gi|148971329|gb|ABR20202.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  255 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 168/430 (39%), Positives = 242/430 (56%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y+ISGGLHGVG+SVVNALS  L +T+ R       +F  G  +
Sbjct: 1   EVIMTVLHAGGKFDSNSYKISGGLHGVGVSVVNALSTWLKLTIYRDGKRHFMEFREGDAV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL         RGT I F P P  FG    F    L +  +  ++L+  V       + 
Sbjct: 61  APLAVVGDSPK-RGTEIHFLPSPLTFGT-IEFHYDILARRLRELSFLNNGVSIFLKDLRH 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       E F F GG++ +++     R+++   +F    EK+G    TVE A+ W E
Sbjct: 119 GQE-------ENFSFSGGVRGFVEYLNRTRTVLHPTVFHSVGEKEGI---TVEVAMQWNE 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N     +GGTH + LR A+TR +  + E  +   K  +    DD+     
Sbjct: 169 SYQENVLCFTNNTPQRDGGTHLTALRAAMTRTLNHFIEENELARKAKVETTGDDMREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE  + D    +L++ P EA  ++  +IE + 
Sbjct: 229 CVLSVKVPDPKFSSQTKEKLVSSEVRPAVEEVVSDQMRSFLLEKPAEARIIVGKIIEAAR 288

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK RE   RK A+  L LPGKLADC +      E+++VEGDSAGGSAKQ R+R  
Sbjct: 289 AREAARKARELTRRKGALDGLGLPGKLADCQEKDPAQCEIYLVEGDSAGGSAKQGRDRRF 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q+I+ L+ ALG          E +RY ++IIMTDAD
Sbjct: 349 QAILPLKGKILNVERARFDKLVSSQEIVTLITALGTGIGKDEYSPEKVRYHRIIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|119369926|gb|ABL67977.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 422

 Score =  255 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 158/429 (36%), Positives = 220/429 (51%), Gaps = 11/429 (2%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LH GGKFD +TY++SGGLHGVG+S VNALS +LHV V +    +   F +G   
Sbjct: 1   EVIMTVLHGGGKFDKATYKVSGGLHGVGVSCVNALSKKLHVEVYQNGKAWCDGFCQGQTS 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +  E        R  R               F    L      +A    R+      +  
Sbjct: 61  AYPENGRGDNEARNARSF-------LARWHHFYRDELRLGCAPQAPKRSRIPQPRHQNFL 113

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR-GTVEWAIAWC 309
             E+     +   Y+ GG+ +++    EN+  +  +       K+GT     VE A+ W 
Sbjct: 114 SDERDTEHPELCLYYEGGIVSFVSYLNENKLPMFPKPMYVHGIKEGTDGPVEVEVAMQWN 173

Query: 310 EENPEITS-YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVG 368
           +   E    Y N I T +GGTH SG   ALTR +  Y +  Q    IS+  DD+      
Sbjct: 174 DTYTENLHSYVNNIATRQGGTHVSGFSTALTRVLNNYIKAHQKAEKISVTGDDMREGLTA 233

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           ++SV +  P+F GQTK +L + D    V+    +    +L +NP  A  + E  +  ++ 
Sbjct: 234 VISVKVPNPQFEGQTKQRLGNSDVGSIVQMICGEQLATFLDENPAIARLICEKAMIAAQA 293

Query: 429 RLRRRKQREVN-RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
           R   +K RE+  RKTA+   RLPGKL DC +      E++IVEGDSAGGSAK  R+R  Q
Sbjct: 294 REAAKKARELTLRKTALDSGRLPGKLTDCQERDPELCEIYIVEGDSAGGSAKMGRDRRFQ 353

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADV 546
           A+LP+RGKILNV  A  EKI  N ++  ++ A GC         E LRY K+IIMTDADV
Sbjct: 354 AILPIRGKILNVEKARLEKILQNTEVGSMIAAFGCGIGKDNFNLEKLRYHKIIIMTDADV 413

Query: 547 DGAHIASLL 555
           DG+HI +LL
Sbjct: 414 DGSHIRTLL 422


>gi|84310480|gb|ABC55388.1| DNA gyrase subunit B [Bacillus atrophaeus]
          Length = 409

 Score =  255 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 164/418 (39%), Positives = 236/418 (56%), Gaps = 13/418 (3%)

Query: 136 TLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK 195
            LHAGGKFD S Y++SGGLHGVG SVVNALS  L VTV R   I  Q + RG+P++ +E 
Sbjct: 1   VLHAGGKFDGSGYKVSGGLHGVGASVVNALSTTLDVTVHRDGKIHYQAYERGVPMADVEV 60

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
             +  +  GT   F PDP+IF +   +D   L    +  A+L+  VK      +E  E+ 
Sbjct: 61  IGET-DTTGTITHFVPDPEIFTETTVYDYDLLSSRVRELAFLTKGVKITIEDKREEKEQK 119

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PE 314
                  + + GG+K+Y++    ++ ++  E    +  K G    TVE A+ + +     
Sbjct: 120 NE-----YCYEGGIKSYVEYLNRSKEVVHEEPIYIEGTKDGI---TVEAALQYNDSYTSN 171

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSV 372
           I S+ N I T EGGTHE+G +  LTR I  YA      +    ++  DD+      I+S+
Sbjct: 172 IYSFANNINTYEGGTHEAGFKTGLTRVINDYARKKGIFKESDPNLSGDDVREGLTAIISI 231

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
              +P+F GQTKTKL + +A+   +    +  + +L +NP  A K+++  +  +  R+  
Sbjct: 232 KHPDPQFEGQTKTKLGNSEARTITDALFSEALETFLFENPDSARKVIDKGLMAARARMAA 291

Query: 433 RKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           +K      RK+A+    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP
Sbjct: 292 KKARELTRRKSALEISNLPGKLADCSSKDPGISELYIVEGDSAGGSAKQGRDRHFQAILP 351

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549
           LRGKILNV  A  +KI +N ++  ++ ALG      +  E  RY KV+IMTDADVDG+
Sbjct: 352 LRGKILNVEKARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVVIMTDADVDGS 409


>gi|267850652|gb|ACY82401.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  255 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 155/415 (37%), Positives = 232/415 (55%), Gaps = 15/415 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKF    Y++SGGLHGVG+SVVNALS +L V V R+  ++ Q++  G P   +++  
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSKKLEVQVKREGKVYQQEYRCGAPQYDIKEIG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +     GT++TF PD +IF +   +D   L    +  A+L+  ++   + ++        
Sbjct: 61  E-SEMTGTQVTFWPDEEIFTETTEYDFDTLQSHIRELAFLNKGIEIVLTDER-------T 112

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
              + F + GG+ ++++   +NR  +       + EK       VE A+ + +     I 
Sbjct: 113 DISQTFIYEGGIISFVEHLNQNREPVHQPPIYVEGEKDHIQ---VEVALQYNDSYTENIY 169

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
           S+ N I T EGGTHESG + ALTR + +YA       +   ++  DD+      I+SV I
Sbjct: 170 SFANNINTHEGGTHESGFKSALTRILNEYARKYNAIKESDANLSGDDVREGLTAIISVKI 229

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRR 433
            +P+F GQTKTKL + + +  VE+   +  + +L +NP  A K++E  V  +      R+
Sbjct: 230 PDPQFEGQTKTKLGNSEVRGIVESLFAEKLEEFLQENPAIAKKIVEKGVQAQRAREAARK 289

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            +    RK+A+    LPGKLADCS   A  +E++IVEGDSAGGSAKQ R+R  QA+LPLR
Sbjct: 290 ARELTRRKSALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLR 349

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           GK+LNV  A  + I  N +I  ++ ALG      +     RY K+IIMTDADVDG
Sbjct: 350 GKVLNVEKARLDMILPNAEIRAIITALGTGIGEDFDISKARYHKIIIMTDADVDG 404


>gi|261265511|gb|ACX55940.1| DNA gyrase subunit B [Paenibacillus sp. YC36]
          Length = 404

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 160/415 (38%), Positives = 230/415 (55%), Gaps = 15/415 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKF    Y++SGGLHGVG+SVVNALS ++ V V R+  I  Q+F  G+P   L    
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSKKVIVQVKREGKIHEQEFRCGVPQYDLRVTG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +  ++ GT++TF PD +IF +   +D   L    +  A+L+  ++   S ++        
Sbjct: 61  ET-DETGTQVTFWPDEEIFTETTEYDYDTLQSRIRELAFLNRGIEIFLSDER-------T 112

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
              + F + GG+ ++++     R  +       + +K   H   VE A+ + +     I 
Sbjct: 113 DVSQTFIYEGGIISFVEYLNRTREALHQPPIFVEGDKDNIH---VEVALQYNDSYSENIY 169

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
           S+ N I T EGGTHESG + ALTR +  YA           ++  DD+      I+SV I
Sbjct: 170 SFANNINTHEGGTHESGFKSALTRILNDYARKHNVIKDSDANLSGDDVREGMTAIISVKI 229

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRR 433
            EP+F GQTKTKL + + +  VE+   + F  ++ +NP  A K++E  V  +      R+
Sbjct: 230 PEPQFEGQTKTKLGNSEVRGIVESLFAEKFQEFMEENPAIAKKIVEKGVQAQRAREAARK 289

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            +    RK+A+    LPGKLADCS   A  +E++IVEGDSAGGSAKQ R+R  QA+LPLR
Sbjct: 290 ARELTRRKSALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLR 349

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           GKILNV  A  +KI  N +I  ++ ALG      +     RY K+IIMTDADVDG
Sbjct: 350 GKILNVEKARLDKILGNAEIRAIITALGTGIGDGFDITKARYHKIIIMTDADVDG 404


>gi|148616466|gb|ABQ96976.1| GyrB [Nocardiopsis prasina]
          Length = 425

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 155/427 (36%), Positives = 230/427 (53%), Gaps = 10/427 (2%)

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
           +E+I+T LHAGGKFD  +Y +SGGLHGVGISVVNALS  L V + +Q  ++ Q +    P
Sbjct: 1   IEVIMTVLHAGGKFDGKSYAVSGGLHGVGISVVNALSTALDVEIRQQGHVWRQHYEMTAP 60

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
              L K  +  +  GT+ITF  D  IF     F    L +  Q  A+L+  +      ++
Sbjct: 61  TGDLVK-GEATDDTGTQITFWADADIFETTT-FSFETLARRMQEMAFLNKGLSITIRDER 118

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
                   P    F++  GL  Y++     +    + I + + + +G     VE A+ W 
Sbjct: 119 -PDHTDDGPVVNTFHYEEGLSDYVRHINAKKEPAHASIISFEEDGEGI---AVEIAMQWN 174

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISA 366
           +     + ++ NTI T EGGTHE G R ALT  + +YA   +    +  ++  DD+    
Sbjct: 175 QSYTSSVHTFANTINTAEGGTHEEGFRSALTTLVNRYARDQKLLRDKEDNLTGDDIREGL 234

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIER 425
             I+SV + +P+F GQTKTKL + +A+  V+    +    +  +NP EA  ++ +     
Sbjct: 235 TAIISVKLADPQFEGQTKTKLGNTEAKSFVQKVTNEHLRDWFERNPGEAKDIVSKASQAA 294

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
                 R+ +    RKT +    LPGKL+DC        E++IVEGDSAGGSAK  RN  
Sbjct: 295 RARVAARQARDLTRRKTLLETTSLPGKLSDCQSTNPEECEVYIVEGDSAGGSAKGGRNPH 354

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545
           NQA+LP+RGKILNV  +  ++I  N ++  ++ ALG     ++  E LRY K+I+MTDAD
Sbjct: 355 NQAILPIRGKILNVEKSRIDRILKNNEVQAIITALGTGIHEEFDAEKLRYHKIILMTDAD 414

Query: 546 VDGAHIA 552
           VDG+HI 
Sbjct: 415 VDGSHIR 421


>gi|190148858|gb|ACE63404.1| DNA gyrase B subunit [Pseudonocardia saturnea]
          Length = 433

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 148/439 (33%), Positives = 237/439 (53%), Gaps = 20/439 (4%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+ +Y +SGGLHGVG+SVVNALS  L V +     ++ Q ++R +P 
Sbjct: 1   EVIMTVLHAGGKFDSDSYAVSGGLHGVGVSVVNALSTALDVEIHTDGFVWRQHYARSVPG 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
              +   +   + G+ +T+  DP IF     ++   + +  Q  A+L+  +      ++ 
Sbjct: 61  PLRK--GEPTRQTGSTVTYWADPDIFETVV-YNIETIRRRLQEMAFLNKGLTIILRDERN 117

Query: 251 IAEKYGIP----------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                             ++  F +P GL+ ++    +++  I  ++ +   E  G    
Sbjct: 118 GDTSAAEEPDAEGYVGKVKEYTFCYPNGLEDFVSYLNKSKDPIHKKLVSFSGEAAGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI-- 357
            +E A+ W       + ++ NTI T EGGTHE G R ALT  + +YA+  +  +      
Sbjct: 175 ALEVAMQWNSGYTESVHTFANTINTHEGGTHEEGFRSALTTTVNRYAKEKKLLKDKDPAL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             +D+      I+SV ++EP+F GQTKTKL + + +  V+    +    +  +NP EA  
Sbjct: 235 SGEDIREGLAAIVSVKVKEPQFEGQTKTKLGNTEVKSFVQRVSNEWLSDWFERNPTEAKT 294

Query: 418 LLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   ++ ++ R   RK    V RK+A     LPGKLADC       +E++IVEGDSAGG
Sbjct: 295 IVNKAVQSAQARAAARKARELVRRKSAGDIGGLPGKLADCRSTDPSKSEVYIVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LP+RGKI+NV  A  +++  N ++  ++ ALG     ++    LRY 
Sbjct: 355 SAKSGRDSMFQAILPIRGKIINVEKARIDRVLKNTEVRAIITALGTGIHDEFDLAKLRYH 414

Query: 537 KVIIMTDADVDGAHIASLL 555
           KV++MTDADVDG+HI +LL
Sbjct: 415 KVVLMTDADVDGSHIRTLL 433


>gi|2905610|gb|AAC03530.1| gyrase subunit B [Shewanella pealeana]
          Length = 419

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 160/431 (37%), Positives = 237/431 (54%), Gaps = 18/431 (4%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L +T+ R   ++ Q ++ G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSSKLQMTIRRDGRVYEQFYAHGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+    +     GT I F P    F D   F    L K  +  ++L+  V      +++
Sbjct: 61  APIAPIGEATK-TGTEIRFWPSTDTFTDVL-FHFDILAKRVRELSFLNSGVGIRLVDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             +       E F + GG+  ++     N + +  E+F    E++     TVE A+ W +
Sbjct: 119 NRD-------EFFKYEGGISAFVDYLNVNNTPVDKEVFHFCQERED--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R ALTR +  Y E      K   +   DD      
Sbjct: 170 GFQENIFCFTNNIPQRDGGTHLAGFRGALTRNLNNYMEREGYNKKGKTAATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            ++SV + +P+F+ QTK KLVS + +  V+  + +    YL ++P EA  ++  +I+ + 
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSSEVKSAVDQTMGEQLGDYLREHPNEAKLIVGKIIDAAR 289

Query: 428 ERLRRRKQREVNRKT-AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK RE NR+  A+    LPGKLADC +     +E+ IVEGDSAGGSAKQ RNR N
Sbjct: 290 ARETGRKARENNRRKGALDLGGLPGKLADCQEKDPGLSEMNIVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE--KVIIMTDA 544
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC          L     K    TDA
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI-CVVNMTVLHAGGKKEDSTTDA 408

Query: 545 DVDGAHIASLL 555
           DV G+HI +LL
Sbjct: 409 DVGGSHIRTLL 419


>gi|326379124|gb|ADZ57475.1| DNA topoisomerase IV subunit B [Flavobacterium psychrophilum]
 gi|326379126|gb|ADZ57476.1| DNA topoisomerase IV subunit B [Flavobacterium psychrophilum]
 gi|326379132|gb|ADZ57479.1| DNA topoisomerase IV subunit B [Flavobacterium psychrophilum]
 gi|326379134|gb|ADZ57480.1| DNA topoisomerase IV subunit B [Flavobacterium psychrophilum]
 gi|326379136|gb|ADZ57481.1| DNA topoisomerase IV subunit B [Flavobacterium psychrophilum]
 gi|326379138|gb|ADZ57482.1| DNA topoisomerase IV subunit B [Flavobacterium psychrophilum]
          Length = 456

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 129/491 (26%), Positives = 214/491 (43%), Gaps = 56/491 (11%)

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
                +       +    ++KM ++  YL+  +   ++ +K             F+   G
Sbjct: 3   SFIADEAIFKNYKYRNEYIIKMLKNYCYLNTGLTIIYNGEK-------------FFSNNG 49

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGG 328
           LK  L+  +    ++   I              +    +  + + E  S+ N   T +GG
Sbjct: 50  LKDLLEENIAEEDMVYPIIHLLG------DDIEIAITHSKTQYSEEYYSFVNGQNTTQGG 103

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           TH    R ++ + IK++             + D+  S V  + V + EP F  QTKTKL 
Sbjct: 104 THLGAFRESIVKTIKEFYN-------KPFEASDIRKSIVSAIVVRVEEPVFESQTKTKLG 156

Query: 389 SLDA-------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           S D        +  V + ++   D++L +NP  A  LL  +++   ER      R++ + 
Sbjct: 157 STDMGPDLPSVRTFVNDFIKTKLDNFLHKNPETADLLLRKILQAERERKELSGIRKLAKD 216

Query: 442 TAIRKLRLPGKLADCSQNIAH-------GTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
            A +      KL DC  ++          + LFI EGDSA GS  ++R+ + QAV  LRG
Sbjct: 217 RAKKSNLHNKKLRDCRVHLTDAKNARSLESTLFITEGDSASGSITKSRDVNTQAVFSLRG 276

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           K LN      + +  N++   L  AL          EDLRY  ++I TDADVDG HI  L
Sbjct: 277 KPLNSYGMSKKIVYENEEFNLLQAALNIE----ESMEDLRYNNIVIATDADVDGMHIRLL 332

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           L+TFF Q   ++I++ HL+++  PLFR+    +++Y + E+ K+  +E+     K K EI
Sbjct: 333 LITFFLQFFPEMIKEGHLYILQTPLFRVRNKKETIYCYSEQEKRDAIEKL----KPKPEI 388

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
           +RFKGLGE+   + K          L  V ++K        +  +   MG    +R  FI
Sbjct: 389 TRFKGLGEISPDEFKNFIG--ETIRLDPVMLDKST----SIEKLLEFYMGKNTPDRQTFI 442

Query: 675 QERASFIDDVG 685
                   ++ 
Sbjct: 443 INNLKV--ELD 451


>gi|261265513|gb|ACX55941.1| DNA gyrase subunit B [Paenibacillus sp. YC54]
          Length = 406

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 164/417 (39%), Positives = 234/417 (56%), Gaps = 17/417 (4%)

Query: 138 HAGGKFDNST--YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK 195
           HAGGKF      Y++SGGLHGVGISVVNALS +L V V R+  +  Q+F+ G+P   L+ 
Sbjct: 1   HAGGKFGGDESGYKVSGGLHGVGISVVNALSKKLVVQVKREGKVHQQEFNCGVPQYDLKV 60

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
             +     GT++TF PD +IF +   +D   L    +  A+L+  V+   + ++      
Sbjct: 61  IGESEE-TGTQVTFWPDEEIFKETTEYDFDTLQSRIRELAFLNKGVEIVLTDERSDVSTS 119

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PE 314
                  F + GG+ ++++     R  + +     + EK      TVE A+ + +     
Sbjct: 120 -------FIYEGGIVSFVEHLNRTREALHTPPIFVEGEKDNI---TVEVALQYNDTYAEN 169

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSV 372
           I S+ N I T EGGTHESG R ALTR + +YA    + +    ++  DD+      I+SV
Sbjct: 170 IYSFANNINTHEGGTHESGFRSALTRILNEYARKFNSIKDSEANLSGDDVREGLTAIISV 229

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLR 431
            I EP+F GQTKTKL + + +  VE+   +  + +LV+NP  A K++E  V  +      
Sbjct: 230 KIPEPQFEGQTKTKLGNSEVRGIVESLFSEKLEEFLVENPSIAKKIIEKGVQAQRAREAA 289

Query: 432 RRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           R+ +    RK+A+    LPGKLADCS   A  +E++IVEGDSAGGSAKQ  +R  QA+LP
Sbjct: 290 RKARELTRRKSALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGCDRHFQAILP 349

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           LRGKILNV  A  +KI +N +I  ++ ALG      +     RY KVIIMTDADVDG
Sbjct: 350 LRGKILNVEKARLDKILSNAEIRAIITALGTGIGDDFDITKARYHKVIIMTDADVDG 406


>gi|148971351|gb|ABR20213.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 169/430 (39%), Positives = 243/430 (56%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y+ISGGLHGVG+SVVNALS  L +T+ R       +F  G  +
Sbjct: 1   EVIMTVLHAGGKFDSNSYKISGGLHGVGVSVVNALSTWLKLTIYRDGKRHFMEFREGDAV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL         RGT I F P P  FG    F    L +  +  ++L+  V       + 
Sbjct: 61  APLAVVGDSPK-RGTEIHFLPSPLTFGT-IEFHYDILARRLRELSFLNNGVSILLKDLRL 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       E F F GG++ +++     R+++   +F    EK+G    TVE A+ W E
Sbjct: 119 GQE-------ENFSFNGGVRGFVEYLNRTRTVLHPTVFHSVGEKEGI---TVEVAMQWNE 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH + LR A+TR +  + E  +   K  +    DD+     
Sbjct: 169 SYQENVLCFTNNIPQRDGGTHLTALRAAMTRTLNHFIEENELARKAKVETTGDDMREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE  + D    +L++ P EA  ++  +IE + 
Sbjct: 229 CVLSVKVPDPKFSSQTKEKLVSSEVRPAVEEVVSDQMRSFLLEKPAEARIVVGKIIEAAR 288

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK RE   RK A+  L LPGKLADC +      E+++VEGDSAGGSAKQ R+R  
Sbjct: 289 AREAARKARELTRRKGALDGLGLPGKLADCQEKDPAQCEIYLVEGDSAGGSAKQGRDRRF 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q+I+ L+ ALG          E +RY ++IIMTDAD
Sbjct: 349 QAILPLKGKILNVERARFDKLVSSQEIVTLITALGTGIGKDEYSPEKVRYHRIIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|261265509|gb|ACX55939.1| DNA gyrase subunit B [Paenibacillus sp. YC28]
          Length = 404

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 165/415 (39%), Positives = 230/415 (55%), Gaps = 15/415 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKF    Y++SGGLHGVG+SVVNALS ++ V V R+  I  Q+F  G+P   L    
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSKKVIVQVKREGKIHEQEFRCGVPQYDLRVTG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +     GT++TF PD +IF +   +D   L    +  A+L+  ++   S ++        
Sbjct: 61  ETEE-TGTQVTFWPDEEIFTETTEYDYDTLQSRIRELAFLNRGIEIVLSDER-------T 112

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
                F + GG+ ++++     R  +       + +K   H   VE A+ + +     I 
Sbjct: 113 DVSHTFMYEGGIISFVEYLNRTREALHEPPIFVEGDKDQIH---VEVALQYNDSYSENIY 169

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
           S+ N I T EGGTHESG + ALTR +  YA       +   ++  DD+      I+SV I
Sbjct: 170 SFANNINTHEGGTHESGFKSALTRILNDYARKHNVLKESDSNLSGDDVREGLTAIISVKI 229

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP+F GQTKTKL + + +  VE+   + F  ++ +NP  A KL+E  I+    R   RK
Sbjct: 230 PEPQFEGQTKTKLGNSEVRGIVESLFAEKFQEFMDENPAIAKKLVEKGIQAQRAREAARK 289

Query: 435 QRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            RE   RK+A+    LPGKLADCS   A  +E++IVEGDSAGGSAKQ R+R  QA+LPLR
Sbjct: 290 ARELTRRKSALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLR 349

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           GKILNV  A  +KI  N +I  ++ ALG      +     RY K+IIMTDADVDG
Sbjct: 350 GKILNVEKARLDKILGNAEIRAIITALGTGIGDDFDISKARYHKIIIMTDADVDG 404


>gi|33187343|gb|AAP97534.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni]
          Length = 406

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 167/420 (39%), Positives = 233/420 (55%), Gaps = 18/420 (4%)

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFD  TY++SGGLHGVG+SVVNALS +L  TV R   I+ Q+FS G  +S   
Sbjct: 1   TVLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFG 60

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
              K +   GT I F PD +IF     FD   L K  +  AYL+ ++   +   +     
Sbjct: 61  VIGKSKK-TGTTIEFWPDDQIFEVT-EFDYEILAKRFRELAYLNPKITINFKDSR----- 113

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE 314
             + + E F+F GG+  ++    +  +L  +  F+   E        VE A+ + +   E
Sbjct: 114 --VGKHESFHFEGGISQFVTDLNKKEALTKAIFFSVDEED-----VNVEVALLYNDTYSE 166

Query: 315 IT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
              S+ N I T +GGTHE+G R+ LTR I  Y E      ++   I  +D+    + ++S
Sbjct: 167 NLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGEDVREGLIAVVS 226

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V + EP+F GQTK KL S   +  V  A  +    Y  +NPIEA  ++   +  +  R  
Sbjct: 227 VKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREA 286

Query: 432 RRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +K RE   +K ++    LPGKLADC       +E+++VEGDSAGGSAKQ R RS QA+L
Sbjct: 287 AKKARELTRKKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAIL 346

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           PLRGKILNV  A  +KI  ++QI +++ A GC     +    LRY K+IIMTDADVDG+H
Sbjct: 347 PLRGKILNVEKARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSH 406


>gi|198250535|gb|ACH85249.1| DNA gyrase subunit B [Paenibacillus edaphicus]
          Length = 406

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 166/417 (39%), Positives = 232/417 (55%), Gaps = 17/417 (4%)

Query: 138 HAGGKFDNST--YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK 195
           HAGGKF      Y++SGGLHGVGISVVNALS +L V V R+  +  Q+FS G+P   L+ 
Sbjct: 1   HAGGKFGGDESGYKVSGGLHGVGISVVNALSKKLVVQVKREGKVHQQEFSCGVPQYDLKI 60

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
             +     GT+ TF PD +IF +   +D   L    +  A+L+  ++   + ++      
Sbjct: 61  IGETEE-TGTQATFWPDEEIFKETTEYDFDTLQSRIRELAFLNKGIEIVLTDERSDVSNS 119

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PE 314
                  F + GG+ ++++    NR  +       + EK      TVE A+ + +     
Sbjct: 120 -------FMYEGGIVSFVEHLNRNREPLHEPPIFVEGEKDNI---TVEVALQYNDTYAEN 169

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSV 372
           I S+ N I T EGGTHESG + ALTR + +YA           ++  DD+      I+SV
Sbjct: 170 IYSFANNINTHEGGTHESGFKSALTRILNEYARKYNTIKDNDANLSGDDVREGLTAIISV 229

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLR 431
            I EP+F GQTKTKL + + +  VE+   D  + +LV+NP  A K++E  V  +      
Sbjct: 230 KIPEPQFEGQTKTKLGNSEVRGIVESLFSDKLEEFLVENPSVAKKIVEKGVQAQRAREAA 289

Query: 432 RRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           R+ +    RK+A+    LPGKLADCS   A  +E++IVEGDSAGGSAKQ R+R  QA+LP
Sbjct: 290 RKARELTRRKSALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILP 349

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           LRGKILNV  A  +KI +N +I  ++ ALG      +     RY KVIIMTDADVDG
Sbjct: 350 LRGKILNVEKARLDKILSNAEIRAIITALGTGIGDDFEITKARYHKVIIMTDADVDG 406


>gi|119369942|gb|ABL67985.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 165/430 (38%), Positives = 243/430 (56%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD S+Y++SGGLHGVG+SVVNALSD L + + R   +  Q++  G PL
Sbjct: 1   EVIMTVLHAGGKFDASSYKVSGGLHGVGVSVVNALSDYLLLIIHRDGKVHRQEYRLGDPL 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL        +RGT I F+P  +IF     F+   L K  +  ++L+  V+     ++E
Sbjct: 61  APLAPVGP-SEQRGTTIRFKPSAQIF-THIQFNHDILAKRLRELSFLNSGVRIELIDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                     + F   GGL+ +++    +R+ +   I   KT+       T+E A+ W +
Sbjct: 119 NT-------SDVFQHEGGLQAFVKYLNRSRTPVHESIPWFKTQDGPV---TIEVALQWND 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMISAV 367
                +  Y N I   +GGTH +G R ALTR +  Y   E++  K   +   DD      
Sbjct: 169 SYQESMFCYTNNIPQKDGGTHLAGFRSALTRTLNDYIEKEMSAKKDKTATTGDDAREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERS 426
            ILSV + +P+F+ QTK KLVS + +  VE A+      +L+++P +A  ++  ++    
Sbjct: 229 AILSVKLPDPKFSSQTKDKLVSSEIKGIVEAAVSAKLQDFLLEHPQDAKAIIAKMLEAAR 288

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +E+FIVEGDSAGGSAKQ R+R  
Sbjct: 289 AREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSEIFIVEGDSAGGSAKQGRDRRT 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++ ++  L+ ALGC       +   LRY +VIIMTDAD
Sbjct: 349 QAILPLKGKILNVEKARFDKMLSSAEVGTLITALGCGIGKDDFDLAKLRYHRVIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|29652675|gb|AAO87307.1| DNA gyrase B [Listeria monocytogenes]
          Length = 202

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 92/204 (45%), Positives = 126/204 (61%), Gaps = 2/204 (0%)

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 1   RKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILN 60

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 61  VEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTL 120

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+K
Sbjct: 121 FYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYK 178

Query: 619 GLGEMLASQLKETAMDANKRTLLR 642
           GLGEM   QL +T M+   RTLL+
Sbjct: 179 GLGEMNPEQLWDTTMNPEHRTLLQ 202


>gi|148971293|gb|ABR20184.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 164/430 (38%), Positives = 244/430 (56%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD S+Y++SGGLHGVG+SVVNALSD+L +T+ R   +  Q++  G PL
Sbjct: 1   EVIMTVLHAGGKFDASSYKVSGGLHGVGVSVVNALSDQLQLTIHRDGKVHRQEYHLGTPL 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL        +RGT I F+P  +IF     F+   L K  +  ++L+  V+     ++E
Sbjct: 61  APLAVVGP-SEQRGTTIRFKPSAEIF-THIQFNYEILAKRLRELSFLNSGVRIELVDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                     + F   GGL+ +++    +R+ +   +   K++       T++ A+ W +
Sbjct: 119 N-------RSDVFQHEGGLQAFVKYLNRSRTPVHDTVLWFKSQDGPV---TIDVALQWND 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                +  Y N I   +GGTH +G R ALTR +  Y E   +  K  ++   DD      
Sbjct: 169 SYQESMFCYTNNIPQKDGGTHLAGFRSALTRTLNDYIEKESSAKKDKLTTTGDDAREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERS 426
            ILSV +  P+F+ QTK KLVS + +  VE A+      +L+++P EA  ++  +I    
Sbjct: 229 AILSVKLPNPKFSSQTKDKLVSSEVKGIVEAAVGTKLQDFLLEHPQEAKAIVAKIIEAAR 288

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +E+FIVEGDSAGGSAKQ R+R  
Sbjct: 289 AREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSEIFIVEGDSAGGSAKQGRDRRT 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  +  +K+  + ++  L+ ALGC   +  +    LRY +VIIMTDAD
Sbjct: 349 QAILPLKGKILNVEKSRFDKMLASAEVGTLITALGCGIGKDDFDIAKLRYHRVIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|148971395|gb|ABR20235.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 161/430 (37%), Positives = 250/430 (58%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNAL + LH+ + R+  +  Q++  G  +
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALPEHLHLLIKREGKLHEQEYRNGDAV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            PL+     +   GT I F+P  K+F     F+   L +  +  ++L+  V+      ++
Sbjct: 61  YPLQVVADAQG-TGTEIRFKPSAKVF-THIQFNYDILARRLRELSFLNSGVRILLHDQRD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + + F + GG+K +++    N++ +   +F    E +   R TVE A+ W +
Sbjct: 119 -------DKHDVFQYQGGIKAFVEHLNRNKTALHETVFHFIAEHE---RTTVEIALQWND 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR I  Y E      K  I +  DD      
Sbjct: 169 SYQETVYCFTNNIPQRDGGTHLAGFRAALTRTINNYIETEGLLKKEKIPMTGDDAREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERS 426
           GI+SV + +P+F+ QTK KLVS + +  VE+ +   F+ +L++ P+E+  ++  VI    
Sbjct: 229 GIVSVKLPDPKFSSQTKDKLVSSEVKGVVESLMAGKFEEFLLEKPVESKIIVGKVIEAAR 288

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +ELF+VEGDSAGGSAKQ R+R  
Sbjct: 289 AREAARKAREMTRRKGALDVAGLPGKLADCQERDPALSELFLVEGDSAGGSAKQGRDRKC 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++ ++  L+ ALGC   + ++  + LRY ++IIMTDAD
Sbjct: 349 QAILPLKGKILNVEKARFDKMLSSVEVGTLITALGCGIGKEEFNIDKLRYHRIIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|18916411|dbj|BAB85501.1| DNA gyrase subunit B [Rhodopseudomonas sp. B29]
          Length = 303

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 116/313 (37%), Positives = 170/313 (54%), Gaps = 12/313 (3%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DNA+DE +AGYA  +EV L+ +G +TV D+GRGIPV+ H K   
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGYATRVEVILNADGGVTVRDDGRGIPVDIH-KGEG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALS +L + V R +     +F+ 
Sbjct: 60  VSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLILRVWRNDKEHYIEFAH 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  ++PLE       +RGT +TF    + F     +D A L    +  A+L+  V    S
Sbjct: 120 GDAVAPLEVVGDANGRRGTEVTFYASAETF-THIEYDFATLEHRLRELAFLNSGVYIVLS 178

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +   EK      EE  + GG+  +++    N+  I         +  G    TVE A+
Sbjct: 179 DMRHAVEKR-----EEMRYEGGVTEFVKYLDRNKKPIVDTPIVMMADLNGI---TVEAAL 230

Query: 307 AWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
            W +   E    + N I   +GGTH +G R ALTR +  YA+    K  +++  DD    
Sbjct: 231 WWNDTYHENVLCFTNNIPQRDGGTHLAGFRAALTRQLTGYADNNAKKEKVALTGDDCREG 290

Query: 366 AVGILSVFIREPE 378
              +LSV + +P+
Sbjct: 291 LTAVLSVKVPDPK 303


>gi|328349725|emb|CBY89170.1| GyrB protein [Flavobacterium sp. R-40837]
          Length = 419

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 165/417 (39%), Positives = 235/417 (56%), Gaps = 11/417 (2%)

Query: 113 GRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVT 172
           GRGIPV  H K    S LE+++T + AGGKFD  +Y++SGGLHGVG+SVVNALS+ L  T
Sbjct: 1   GRGIPVGIHKK-EGVSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRAT 59

Query: 173 VA-RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMT 231
           V      ++ Q++ +G  L P+++  +    RGT +TF PD  IF     +    L    
Sbjct: 60  VHSSDGKVYEQEYEKGKALYPVKQIGETTK-RGTIVTFYPDQSIFTQTIDYSYDTLSARM 118

Query: 232 QSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGK 291
           +  +YL+  +   ++  +E  +K G    E F+   GLK Y++    NR  I + + +  
Sbjct: 119 RELSYLNKGITITFTDKRE-LDKEGNFVSEIFHSTEGLKEYIRYLDGNREPIIAHVISMD 177

Query: 292 TEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
            EK       VE A+ +       I SY N I T EGGTH  G R  LTR +KKYA+ + 
Sbjct: 178 NEK---GEIPVEVALIYNTSYSENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADASG 234

Query: 351 N--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
              K    I  DD       I+SV + EP+F GQTKTKL + +    V  A+ D  + YL
Sbjct: 235 MLDKLKFDISGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVVSPVSQAVGDMIEAYL 294

Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELF 467
            +NP +A  +++ VI  ++ R   +K RE+  RKT +    LPGKL+DCS+      E++
Sbjct: 295 EENPNDARIIVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVY 354

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           +VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV  A   K+  N++I ++  ALG   
Sbjct: 355 LVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFENEEIRNIFTALGVTI 411


>gi|33187283|gb|AAP97504.1| DNA gyrase subunit B [Campylobacter jejuni]
          Length = 406

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 169/420 (40%), Positives = 234/420 (55%), Gaps = 18/420 (4%)

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFD  TY++SGGLHGVG+SVVNALS +L  TV R   I+ Q+FS G  +S   
Sbjct: 1   TVLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFG 60

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
              K +   GT I F PD +IF     FD   L K  +  AYL+ ++   +  ++     
Sbjct: 61  VIGKSKK-TGTTIEFWPDDQIFEVT-EFDYEILAKRFRELAYLNPKITINFKDNR----- 113

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE 314
             + + E F+F GG+  ++    +  +L  +  F+   E        VE A+ + +   E
Sbjct: 114 --VGKHESFHFEGGISQFVTDLNKKEALTKAIFFSVDEED-----VNVEVALLYNDTYSE 166

Query: 315 IT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
              S+ N I T +GGTHE+G R+ LTR I  Y E      ++   I  DD+    + I+S
Sbjct: 167 NLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGDDVREGLIAIVS 226

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V + EP+F GQTK KL S   +  V  A  +    Y  +NPIEA  ++   +  +  R  
Sbjct: 227 VKVSEPQFEGQTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREA 286

Query: 432 RRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +K RE   +K ++    LPGKLADC       +E+++VEGDSAGGSAKQ R RS QA+L
Sbjct: 287 AKKARELTRKKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAIL 346

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           PLRGKILNV  A  +KI  ++QI +++ A GC     +    LRY K+IIMTDADVDG+H
Sbjct: 347 PLRGKILNVEKARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSH 406


>gi|326379130|gb|ADZ57478.1| DNA topoisomerase IV subunit B [Flavobacterium psychrophilum]
          Length = 456

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 129/491 (26%), Positives = 214/491 (43%), Gaps = 56/491 (11%)

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
                +       +    ++KM ++  YL+  +   ++ +K             F+   G
Sbjct: 3   SFIADEAIFKNYKYRNEYIIKMLKNYCYLNTGLTIIYNGEK-------------FFSNNG 49

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGG 328
           LK  L+  +    ++   I              +    +  + + E  S+ N   T +GG
Sbjct: 50  LKDLLEENIAEEDMVYPIIHLLG------DDIEIAITHSKTQYSEEYYSFVNGQNTTQGG 103

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           TH    R ++ + IK++             + D+  S V  + V + EP F  QTKTKL 
Sbjct: 104 THLGAFRESIVKTIKEFYN-------KPFEASDIRKSIVSAIVVRVEEPVFESQTKTKLG 156

Query: 389 SLDA-------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           S D        +  V + ++   D++L +NP  A  LL  +++   ER      R++ + 
Sbjct: 157 STDMGPDLPSVRTFVNDFIKTKLDNFLHKNPETADLLLRKILQAERERKELSGIRKLAKD 216

Query: 442 TAIRKLRLPGKLADCSQNIAH-------GTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
            A +      KL DC  ++          + LFI EGDSA GS  ++R+ + QAV  LRG
Sbjct: 217 RAKKSNLHNKKLRDCRVHLTDAKNARSLESTLFITEGDSASGSITKSRDVNTQAVFSLRG 276

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           K LN      + +  N++   L  AL          EDLRY  ++I TDADVDG HI  L
Sbjct: 277 KPLNSYGMSKKIVYENEEFNLLQAALNIE----ESMEDLRYNTIVIATDADVDGMHIRLL 332

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           L+TFF Q   ++I++ HL+++  PLFR+    +++Y + E+ K+  +E+     K K EI
Sbjct: 333 LITFFLQFFPEMIKEGHLYILQTPLFRVRNKKETIYCYSEQEKRDAIEKL----KPKPEI 388

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
           +RFKGLGE+   + K          L  V ++K        +  +   MG    +R  FI
Sbjct: 389 TRFKGLGEISPDEFKNFIG--ETIRLDPVMLDKST----SIEKLLEFYMGKNTPDRQTFI 442

Query: 675 QERASFIDDVG 685
                   ++ 
Sbjct: 443 INNLKV--ELD 451


>gi|27544670|dbj|BAC55030.1| DNA gyrase B subunit [Legionella erythra]
          Length = 299

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 105/307 (34%), Positives = 164/307 (53%), Gaps = 16/307 (5%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
            D   LHH+  EV+DN++DE +AGY   I V++  +  +TV D+GRGIPV+ H K   +S
Sbjct: 3   VDGTGLHHMVFEVVDNSIDEALAGYCKEIFVTIHADESITVKDDGRGIPVDIH-KEEGRS 61

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
             E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+ELH+T+ R   +  Q +  G+
Sbjct: 62  AAEVIMTILHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLTIRRNGKVHEQHYRNGV 121

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
           P +PL       N  GT++ F+P    F +   F    L K  +  ++L+  V      +
Sbjct: 122 PDAPLAITGDA-NATGTQVWFKPSANTFNN-IEFHYDILAKRLRELSFLNSGVCIHLFDE 179

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +         +++ F + GG++ +++    N++ I   +F+   EK      TV+ ++ W
Sbjct: 180 R-------TQKQDTFRYEGGIQAFVEHLNRNKTPIMPVVFSLTAEKDNI---TVDLSMQW 229

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
                     + N I   +GGTH +G R ALTR +  Y E      K  ++   DD    
Sbjct: 230 NNSFQETFFCFTNNIPQRDGGTHLAGFRAALTRTLNTYIETEGYAKKAKVTTTGDDAREG 289

Query: 366 AVGILSV 372
               LS 
Sbjct: 290 PHSCLSC 296


>gi|209863983|gb|ACI88909.1| GyrB [Acidithiobacillus caldus]
          Length = 420

 Score =  253 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 163/430 (37%), Positives = 252/430 (58%), Gaps = 15/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD S+Y++SGGLHGVG+SVVNALS  L +++ R    + Q++ RG P+
Sbjct: 1   EVIMTVLHAGGKFDESSYKVSGGLHGVGVSVVNALSSRLELSIKRDGQRWEQEYRRGDPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+      R   GT I F PDP++F     F   +L    +  AYL+  ++     ++ 
Sbjct: 61  APIAAVGPARG-TGTTIRFWPDPEVFESVV-FAFRKLQSRFRELAYLNDNLRITLRDER- 117

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                G   +E +++ GG+  +++   + R+ I   I T K E++G     V+ A+ W +
Sbjct: 118 ----PGKTREETYHYEGGVAAFVRDLNQGRTPIHPTILTIKGEQEGI---VVDAAVQWND 170

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R A+TR +  Y E     +K  +++ + D+     
Sbjct: 171 GYSESVYPFTNNIPQADGGTHLTGFRAAMTRALGAYIERETADSKSKVAVEAADMREGLT 230

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE  + D    +L ++P+EA  ++  ++E + 
Sbjct: 231 AVLSVKVPDPKFSSQTKDKLVSSEVRPVVEALVSDQLTSFLDEHPVEARAIVGKIVEAAR 290

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK RE   RK+A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R  
Sbjct: 291 AREAARKAREITRRKSALDVANLPGKLADCQERDPALCEIYLVEGDSAGGSAKQGRDRKF 350

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDAD 545
           QA+LPL+GKILN   A  ++I ++ ++  L+ ALG    +     E LRY ++IIMTDAD
Sbjct: 351 QAILPLKGKILNAERARFDRILSSDEVGTLITALGTGIGADEFRLEKLRYHRIIIMTDAD 410

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 411 VDGSHIRTLL 420


>gi|183987584|gb|ACC65782.1| topoisomerase II [Pleurotus cornucopiae]
          Length = 692

 Score =  253 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 114/545 (20%), Positives = 207/545 (37%), Gaps = 35/545 (6%)

Query: 154 LHGVGISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEK-VRNKRGTRITFR 210
            +G G  + N  S E  +  A       +SQ +++ +      K  K  RN+  TR+TF+
Sbjct: 1   RNGYGAKLANIYSLEFTIETADKVNGKKYSQTWTKNMTQVGKAKITKNSRNEEYTRVTFK 60

Query: 211 PDPKIFGDKAGFDAA--RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           P+   FG           L K     A     VK   + ++    K    ++    +   
Sbjct: 61  PELTRFGMTHIDPDTAGLLRKRVYDMAGTVKDVKVYLNDERL---KIKTFKQYVEMYIEA 117

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGG 328
                +      +     +   +           E A A  +   +  S+ N+I T +GG
Sbjct: 118 ATAGAKENSGGAAQAKPTVIYEQIS------PRWEVAFATSDGTFQQVSFANSISTIKGG 171

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           TH + +   L++ I  +       +A ++    +       ++  I  P F  QTK  L 
Sbjct: 172 THVNYIADQLSKSIIAHIAKKN--KAATVKPAQVKNHMWIFVNALIENPTFDSQTKETLT 229

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR 448
               +     AL + F   + ++ I    L     +  ++  R    +        +   
Sbjct: 230 LPAGKFGSRPALSEEFMKKVQKSSIIDQVLNWAKFKADQQIKRTDGSKRNRLTGMAKLSD 289

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSE 505
                   ++       L + EGDSA   A        R N  V PLRGK+LNV  A  +
Sbjct: 290 ANNAGTKNAEKY----TLILTEGDSAKSLAVAGLAVVGRDNFGVFPLRGKLLNVREARHD 345

Query: 506 KIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           +I  N++I ++ + +G +   +Y     LRY +++IMTD D DG HI  LL+ F      
Sbjct: 346 QIMKNEEIQNIKKIMGLQHNKEYTNVSSLRYGRLMIMTDQDQDGTHIKGLLINFLDHFYP 405

Query: 565 DLIEQK-HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
            L++    L     P+ R+T+G +          +  LEE       K     +KGLG  
Sbjct: 406 SLLKVPEFLVEFVTPIVRVTKGNQRKNFFTIPEYETWLEETPDS--KKWTAKYYKGLGTS 463

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE--RASFI 681
             +  +E      K  +    +  +  +L     + +K    KAD+R +++++    +++
Sbjct: 464 SDADAREYFSQMGKHMIPFATMEDEERAL--IDLAFSK---KKADDRKEWLRQFKPGTYL 518

Query: 682 D-DVG 685
           D ++ 
Sbjct: 519 DHNID 523


>gi|29652709|gb|AAO87324.1| DNA gyrase B [Listeria monocytogenes]
          Length = 210

 Score =  253 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 93/211 (44%), Positives = 128/211 (60%), Gaps = 2/211 (0%)

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +R +    + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+L
Sbjct: 2   AKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAIL 61

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           P+RGKILNV  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAH
Sbjct: 62  PIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAH 121

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           I +LLLT FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  
Sbjct: 122 IRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDT 179

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           K  I R+KGLGEM   QL +T M+   RTLL
Sbjct: 180 KYSIQRYKGLGEMNPEQLWDTTMNPEHRTLL 210


>gi|119369918|gb|ABL67973.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 419

 Score =  253 bits (647), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 169/430 (39%), Positives = 249/430 (57%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD S Y++SGGLHGVG+SVVNALSD L + +        Q++  G P+
Sbjct: 1   EVIMTVLHAGGKFDGSGYKVSGGLHGVGVSVVNALSDILLLDIFLDGKHHHQEYRMGDPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           SPL    +   +RGT + F P  KIF +   F    L +  +  ++L+  V+     +  
Sbjct: 61  SPLAVAGEANGRRGTLVRFYPSAKIFTN-LEFHYDILARRLRELSFLNPGVRIVLREE-- 117

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                    ++ + + GG+K +++   +N+S I   I   + E+ G     VE A+ W +
Sbjct: 118 -----TTGREDVYEYKGGIKAFVEYLNKNKSSIHDSILYMEVEQDGVM---VEAALQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR +  + E      K  IS+I DD      
Sbjct: 170 SYTENVFCFTNNIPQKDGGTHLTGFRNALTRVLGDHLETEGYVKKEKISMIGDDTREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV +R+P+F+ QTK KLVS +    V   + +    +L++NP EA  +   V E + 
Sbjct: 230 AVLSVKVRDPKFSSQTKEKLVSSEVTPVVSTIVGERLKDFLLENPREAKLVAAKVCEAAR 289

Query: 428 ERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK +E+NR+ + +    LPGKLADC +     +ELF+VEGDSAGGSAKQ R+R  
Sbjct: 290 AREAARKAKELNRRKSVLDIAGLPGKLADCQEKDPAKSELFLVEGDSAGGSAKQGRDRHF 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  EK+ ++Q++  L+ A+GC   +  ++ E LRY ++IIMTDAD
Sbjct: 350 QAILPLKGKILNVEKARLEKMLSSQEVATLITAMGCGIGKDDFKPEKLRYHRIIIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHIRTLL 419


>gi|88824775|gb|ABD52433.1| gyrase B [Pseudomonas putida]
          Length = 419

 Score =  253 bits (647), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 159/423 (37%), Positives = 243/423 (57%), Gaps = 16/423 (3%)

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
           I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L +TV R   I+ Q +  G+P +P
Sbjct: 4   IMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAP 63

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
           +    +     GT I F+P  + F +   F    L K  +  ++L+  V      ++   
Sbjct: 64  MAVVGE-SETTGTHIHFKPSAETFKNIH-FSWDILAKRIRELSFLNSGVGILLKDERSGK 121

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
           E       E F + GGL+ +++    N++ ++S++F    +++      VE A+ W +  
Sbjct: 122 E-------EFFKYEGGLRAFVEYLNTNKTPVNSQVFHFSVQRED--GVGVEVALQWNDSF 172

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369
              +  + N I   +GGTH  G R +LTR +  Y E      K  ++   DD       I
Sbjct: 173 NENLLCFTNNIPQRDGGTHLVGFRSSLTRSLNSYIEQEGLAKKNKVATTGDDAREGLTAI 232

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEE 428
           +SV + +P+F+ QTK +LVS + +  VE  +   F  +L++NP EA  ++  +I+     
Sbjct: 233 ISVKVPDPKFSSQTKDRLVSSEVKTAVEQEMNKYFSDFLLENPNEAKAVVGKMIDAARAR 292

Query: 429 RLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
              R+ +    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA
Sbjct: 293 EAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQA 352

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVD 547
           +LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVD
Sbjct: 353 ILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGREEYNIDKLRYHNIIIMTDADVD 412

Query: 548 GAH 550
           G+H
Sbjct: 413 GSH 415


>gi|33187333|gb|AAP97529.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni]
          Length = 405

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 168/419 (40%), Positives = 233/419 (55%), Gaps = 18/419 (4%)

Query: 136 TLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK 195
            LHAGGKFD  TY++SGGLHGVG+SVVNALS +L  TV R   I+ Q+FS G  +S    
Sbjct: 1   VLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFGV 60

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
             K +   GT I F PD +IF     FD   L K  +  AYL+ ++   +  ++      
Sbjct: 61  IGKSKK-TGTTIEFWPDDQIFEVT-EFDYEILAKRFRELAYLNPKITINFKDNR------ 112

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI 315
            + + E F+F GG+  ++    +  +L  +  F+   E        VE A+ + +   E 
Sbjct: 113 -VGKHESFHFEGGISQFVTDLNKKEALTKAIFFSVDEED-----VNVEVALLYNDTYSEN 166

Query: 316 T-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSV 372
             S+ N I T +GGTHE+G R+ LTR I  Y E      ++   I  DD+    + I+SV
Sbjct: 167 LLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGDDVREGLIAIVSV 226

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
            + EP+F GQTK KL S   +  V  A  +    Y  +NPIEA  ++   +  +  R   
Sbjct: 227 KVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAA 286

Query: 433 RKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           +K RE   +K ++    LPGKLADC       +E+++VEGDSAGGSAKQ R RS QA+LP
Sbjct: 287 KKARELTRKKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILP 346

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           LRGKILNV  A  +KI  ++QI +++ A GC     +    LRY K+IIMTDADVDG+H
Sbjct: 347 LRGKILNVEKARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSH 405


>gi|148470284|gb|ABQ66089.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 176/430 (40%), Positives = 248/430 (57%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+ +Y+ISGGLHGVG+SVVNALS++L +T+     ++ Q++  G P+
Sbjct: 1   EVIMTVLHAGGKFDHDSYKISGGLHGVGVSVVNALSEDLKLTIRMNGKVYEQRYRDGDPM 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL          GT I F+P  +IF +   F    + K  +  AYL+  +      ++ 
Sbjct: 61  APLAPVGSSSEH-GTEIRFKPSRQIFKN-IQFQYDTIAKRLRELAYLNASIHIYLHDER- 117

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   +KE F F GGLK ++Q    N++ I S+IF   TEK  T    VE A+ W +
Sbjct: 118 ------TDKKETFEFHGGLKEFVQDLNRNKTPIHSKIFYFSTEKDQTI---VEVAMQWND 168

Query: 311 ENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAV 367
              E    + N I   +GG+H  G R ALTR +  Y E     +        DD     +
Sbjct: 169 TYQEKLFCFTNNIPQKDGGSHVVGFRSALTRVLNNYIEKEGYAKREKIATTGDDFREGLI 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ILSV +  P+F+ QTK KLVS + +  VE+ + + F+ +L++ P +A  ++  V+E   
Sbjct: 229 AILSVKMPNPKFSSQTKDKLVSSEVKAVVESVMGEKFNAFLLECPQDAKSIVAKVMETAR 288

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK+A     LPGKLADC +     +ELFIVEGDSAGGSAKQARNR  
Sbjct: 289 AREAARKARELTRRKSAFDVAGLPGKLADCQEEDPSLSELFIVEGDSAGGSAKQARNRKT 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDAD 545
           QAVLPL+GKILNV  A   K+ ++Q+++ L+ ALGC    +    + LRY  VIIMTDAD
Sbjct: 349 QAVLPLKGKILNVEKARFGKMLSSQEVVTLITALGCGIGREEYSPDKLRYHHVIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|119369910|gb|ABL67969.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 156/428 (36%), Positives = 230/428 (53%), Gaps = 13/428 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFDN+TY++SGGLHGVG+SVVNALS+ L + + ++   F Q + +G P 
Sbjct: 1   EVIMTVLHAGGKFDNNTYKVSGGLHGVGVSVVNALSETLLLDIDQKGQHFHQVYHKGAPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           SPL       ++ GT I F PD  I      F    L    +  ++L+  +    + ++ 
Sbjct: 61  SPLAVTG-SSDRTGTAIRFYPDLTIMET-DQFSYDVLAHRFRELSFLNPSLTITLAEEET 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
           + E         F+  GG++++L    EN+ ++   +F  K  + G     + +      
Sbjct: 119 LRE-------SVFHDEGGIRSFLSFVNENKRVLHEPLFFWKVLENGAT-FEISFQYQDTT 170

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
           +   + SY N I T EGG+H  G R ALT+ + ++       +   +  +D+      I+
Sbjct: 171 DAETLLSYVNNIPTREGGSHVRGFRSALTKVVNRFIRDKNLNKGEEVKGEDIREGLSAIV 230

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           S+ I  P+F GQTK KL S      +E  L +  +    +    A  + +  I  ++ R 
Sbjct: 231 SIKIPNPQFEGQTKAKLGSSWVAGAMETFLSESLEDAFEKQGAIARAIADKAILSAQARE 290

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK RE   RK  +    LPGKLADC +N    +EL+IVEGDSAGGSAKQ R+R  QA+
Sbjct: 291 AARKARELTKRKNVLEGSNLPGKLADCQENDPAKSELYIVEGDSAGGSAKQGRDRRFQAI 350

Query: 490 LPLRGKILNVASAG-SEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVD 547
           LPL+GKILNV      EK   + ++  L+ A+GC    +      LRY K+IIMTDADVD
Sbjct: 351 LPLKGKILNVEKTKGVEKFITHDEVRALITAVGCGLGDEDFSLKNLRYHKIIIMTDADVD 410

Query: 548 GAHIASLL 555
           G+HI +LL
Sbjct: 411 GSHIRTLL 418


>gi|169836388|ref|ZP_02869576.1| DNA topoisomerase IV subunit B [candidate division TM7 single-cell
           isolate TM7a]
          Length = 183

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 68/187 (36%), Positives = 109/187 (58%), Gaps = 5/187 (2%)

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           +  +G  K   N +I  ++ A G         + LRY K++IMTDADVDGAHI +L+LTF
Sbjct: 1   MEKSGVHKALENAEIRAMITAFGAGFGDDMDIKKLRYHKIVIMTDADVDGAHIRTLMLTF 60

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY+ + +LI + ++++  PPL++I  G    YA+ ++  +++ +  +K G+ K  I R+K
Sbjct: 61  FYRHLRELINEGYIYIAQPPLYKIQAGKAIRYAYSDDQLKQVTKVLEKDGR-KYTIQRYK 119

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           GLGEM   QL ET +D   RTLL+V +              N LMG K + R KFI++ A
Sbjct: 120 GLGEMNPEQLWETTLDPEVRTLLKVSMED----ASYADKMFNILMGDKVEPRRKFIEDNA 175

Query: 679 SFIDDVG 685
           +++ ++ 
Sbjct: 176 NYVRNLD 182


>gi|33187341|gb|AAP97533.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni]
          Length = 405

 Score =  253 bits (646), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 167/419 (39%), Positives = 233/419 (55%), Gaps = 18/419 (4%)

Query: 136 TLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK 195
            LHAGGKFD  TY++SGGLHGVG+SVVNALS +L  TV R   I+ Q+FS G  +S    
Sbjct: 1   VLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFGV 60

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
             K +   GT I F PD +IF     FD   L K  +  AYL+ ++   +  ++      
Sbjct: 61  IGKSKK-TGTTIEFWPDDQIFEVT-EFDYEILAKRFRELAYLNPKITINFKDNR------ 112

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI 315
            + + E F+F GG+  ++    +  +L  +  F+   E        VE A+ + +   E 
Sbjct: 113 -VGKHESFHFEGGISQFVTDLNKKEALTKAIFFSVDEED-----VNVEVALLYNDTYSEN 166

Query: 316 T-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSV 372
             S+ N I T +GGTHE+G R+ LTR I  Y E      ++   I  DD+    + ++SV
Sbjct: 167 LLSFVNNIKTPDGGTHETGFRMGLTRVISNYIEANASAREKDNKITGDDVREGLIAVVSV 226

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
            + EP+F GQTK KL S   +  V  A  +    Y  +NPIEA  ++   +  +  R   
Sbjct: 227 KVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALIAARGREAA 286

Query: 433 RKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           +K RE   +K ++    LPGKLADC       +E+++VEGDSAGGSAKQ R RS QA+LP
Sbjct: 287 KKARELTRKKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILP 346

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           LRGKILNV  A  +KI  ++QI +++ A GC     +    LRY K+IIMTDADVDG+H
Sbjct: 347 LRGKILNVEKARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSH 405


>gi|330898605|gb|EGH30024.1| DNA gyrase subunit B [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 173

 Score =  253 bits (646), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 86/174 (49%), Positives = 124/174 (71%), Gaps = 3/174 (1%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97
           S +  YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AG+ + I
Sbjct: 2   SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            + +  +  +TV DNGRGIPV+ H K    S  E+I+T LHAGGKFD+++Y++SGGLHGV
Sbjct: 62  SIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           G+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+I F+P
Sbjct: 121 GVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDSTGTQIHFKP 173


>gi|119369964|gb|ABL67996.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  253 bits (646), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 156/428 (36%), Positives = 230/428 (53%), Gaps = 13/428 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFDN+TY++SGGLHGVG+SVVNALS+ L + + ++   F Q + +G P 
Sbjct: 1   EVIMTVLHAGGKFDNNTYKVSGGLHGVGVSVVNALSETLLLDIDQKGQHFHQVYHKGAPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           SPL       ++ GT I F PD  I      F    L    +  ++L+  +    + ++ 
Sbjct: 61  SPLAVTG-SSDRTGTAIRFYPDLTIMET-GQFSYDVLAHRFRELSFLNPSLTITLAEEET 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
           + E         F+  GG++++L    EN+ ++   +F  K  + G     + +      
Sbjct: 119 LRE-------SVFHDEGGIRSFLSFVNENKRVLHEPLFFWKVLENGAT-FEISFQYQDTT 170

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
           +   + SY N I T EGG+H  G R ALT+ + ++       +   +  +D+      I+
Sbjct: 171 DAETLLSYVNNIPTREGGSHVRGFRSALTKVVNRFIRDKNLNKGEEVKGEDIREGLSAIV 230

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           S+ I  P+F GQTK KL S      +E  L +  +    +    A  + +  I  ++ R 
Sbjct: 231 SIKIPNPQFEGQTKAKLGSSWVAGAMETFLSESLEDAFEKQGAIARAIADKAILSAQARE 290

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK RE   RK  +    LPGKLADC +N    +EL+IVEGDSAGGSAKQ R+R  QA+
Sbjct: 291 AARKARELTKRKNVLEGSNLPGKLADCQENDPAKSELYIVEGDSAGGSAKQGRDRRFQAI 350

Query: 490 LPLRGKILNVASAG-SEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVD 547
           LPL+GKILNV      EK   + ++  L+ A+GC    +      LRY K+IIMTDADVD
Sbjct: 351 LPLKGKILNVEKTKGVEKFITHDEVRALITAVGCGLGDEDFSLKNLRYHKIIIMTDADVD 410

Query: 548 GAHIASLL 555
           G+HI +LL
Sbjct: 411 GSHIRTLL 418


>gi|326379128|gb|ADZ57477.1| DNA topoisomerase IV subunit B [Flavobacterium psychrophilum]
          Length = 456

 Score =  253 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 129/491 (26%), Positives = 213/491 (43%), Gaps = 56/491 (11%)

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
                +       +    ++KM ++  YL+  +   ++ +K             F+   G
Sbjct: 3   SFIADEAIFKNYKYRNEYIIKMLKNYCYLNTGLTIIYNGEK-------------FFSNNG 49

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGG 328
           LK  L+  +    ++   I              +    +  + + E  S+ N   T +GG
Sbjct: 50  LKDLLEENIAEEDMVYPIIHLLG------DDIEIAITHSKTQYSEEYYSFVNGQNTTQGG 103

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           TH    R ++ + IK++             + D+  S V  + V + EP F  QTKTKL 
Sbjct: 104 THLGAFRESIVKTIKEFYN-------KPFEASDIRKSIVSAIVVRVEEPVFESQTKTKLG 156

Query: 389 SLDA-------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           S D        +  V + ++   D++L +NP  A  LL  +++   ER      R++ + 
Sbjct: 157 STDMGPDLPSVRTFVNDFIKTKLDNFLHKNPETADLLLRKILQAERERKELSGIRKLAKD 216

Query: 442 TAIRKLRLPGKLADCSQNIAH-------GTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
            A +      KL DC  ++          + LFI EGDSA GS  ++R+ + QAV  LRG
Sbjct: 217 RAKKSNLHNKKLRDCRVHLTDAKNARSLESTLFITEGDSASGSITKSRDVNTQAVFSLRG 276

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           K LN      + +  N++   L  AL          EDLRY   +I TDADVDG HI  L
Sbjct: 277 KPLNSYGMSKKIVYENEEFNLLQAALNIE----ESMEDLRYNNCVIATDADVDGMHIRLL 332

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           L+TFF Q   ++I++ HL+++  PLFR+    +++Y + E+ K+  +E+     K K EI
Sbjct: 333 LITFFLQFFPEMIKEGHLYILQTPLFRVRNKKETIYCYSEQEKRDAIEKL----KPKPEI 388

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
           +RFKGLGE+   + K          L  V ++K        +  +   MG    +R  FI
Sbjct: 389 TRFKGLGEISPDEFKNFIG--ETIRLDPVMLDKST----SIEKLLEFYMGKNTPDRQTFI 442

Query: 675 QERASFIDDVG 685
                   ++ 
Sbjct: 443 INNLKV--ELD 451


>gi|307939316|gb|ADN95849.1| DNA gyrase B [Hymenobacter sp. 35/26(2010)]
          Length = 435

 Score =  253 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 173/441 (39%), Positives = 250/441 (56%), Gaps = 23/441 (5%)

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           +I+T LHAGGKFD  +Y++SGGLHGVG+S VNALS +L VTV R   ++ Q++  G+P  
Sbjct: 1   LIMTVLHAGGKFDKDSYKVSGGLHGVGVSCVNALSKDLKVTVRRNGHLYEQEYKIGVPQY 60

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
           P+++        GT++ F PD  IF +   +    +    +  +YL+  ++   +  +  
Sbjct: 61  PVKQIGDTEEH-GTQVEFLPDDSIFTELV-YKYETIATRLRELSYLNKGIRITLTD-RRD 117

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
            +  G    EEFY  GGL  ++      R+++  +     +EK GT    VE A+ + + 
Sbjct: 118 NDVDGNFLYEEFYSEGGLSEFVGYLDAGRTVLMPKPIHVISEKGGTP---VEVALQYNDS 174

Query: 312 NPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVG 368
             E   SY N I T EGGTH +G R ALTR +K YA+ +    K  + I  DD       
Sbjct: 175 YQEHIFSYVNNINTIEGGTHVAGFRSALTRTLKAYADKSGMLEKAKVEIQGDDFREGLTA 234

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           ++SV ++EP+F GQTKTKL + D    V  A+ +  + YL +NP EA  ++E VI  +  
Sbjct: 235 VISVKVQEPQFEGQTKTKLGNSDVSGAVNQAVGEILNQYLEENPKEARIIVEKVILAARA 294

Query: 429 RLRRRKQREVNRKTAIRKLRL-PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
           R+  RK RE+ ++  +      PGKLADCS++     EL++VEGDSAGG+AKQ RNR+ Q
Sbjct: 295 RIAARKAREMVQRKTVLGSNSLPGKLADCSESDPKICELYLVEGDSAGGTAKQGRNRAFQ 354

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY-------------REEDLR 534
           A+LPLRGKILNV  A   +I  N++I +++ ALG    +                   LR
Sbjct: 355 AILPLRGKILNVEKAQEHRIYENEEIKNMITALGVSFGTPADPENGIEADPKGLNMTKLR 414

Query: 535 YEKVIIMTDADVDGAHIASLL 555
           Y KVIIMTDA VDG+HI +LL
Sbjct: 415 YHKVIIMTDAXVDGSHIRTLL 435


>gi|323710210|gb|ADY03039.1| DNA gyrase B [Escherichia coli]
          Length = 264

 Score =  253 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 96/275 (34%), Positives = 152/275 (55%), Gaps = 13/275 (4%)

Query: 80  EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139
           EV+DNA+DE +AG+   I V++  +  ++V D+GRGIP   HP+    S  E+I+T LHA
Sbjct: 1   EVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHA 59

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL    + 
Sbjct: 60  GGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET 119

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
               GT + F P  + F +   F+   L K  +  ++L+  V       ++  E      
Sbjct: 120 EK-TGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE------ 172

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
            + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  +
Sbjct: 173 -DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCF 228

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR 353
            N I   +GGTH +G R A+TR +  Y +     +
Sbjct: 229 TNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSK 263


>gi|307939334|gb|ADN95858.1| DNA gyrase B [Hymenobacter sp. VUG-A106]
          Length = 438

 Score =  253 bits (645), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 169/441 (38%), Positives = 243/441 (55%), Gaps = 21/441 (4%)

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           II+T LHAGGKFD  +Y++ GGLHGVG+  VNALS +L VTV R   ++ Q++  GIP  
Sbjct: 2   IIMTVLHAGGKFDKDSYKVYGGLHGVGVRCVNALSQDLKVTVRRNGKMYQQEYKIGIPQY 61

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
           P+++     ++ GT++ F PD  IF +   +  A +    +  +YL+  ++   +  +E 
Sbjct: 62  PVKEIG-TTDEHGTQVEFLPDTSIFSEHI-YKYATIAGRLRELSYLNSGIRITLTDRREP 119

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
            EK      EEFY  GGL  ++Q                   +KG+    VE A+ + + 
Sbjct: 120 GEKDAEFRGEEFYSTGGLAEFVQYLDGTERHALMPAPIHVINEKGST--PVEVALQYNDS 177

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVG 368
               I SY N I T EGGTH +G R ALTR +K YA+ +    K  + I  +D       
Sbjct: 178 YQENIFSYVNNINTHEGGTHVAGFRSALTRTLKAYADKSGKLEKAKVEISGEDFREGLTA 237

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSE 427
           ++SV ++EP+F GQTK KL + +    V  A+ +    YL +NP EA  ++E VI     
Sbjct: 238 VISVKVQEPQFEGQTKAKLGNNEVNGAVNTAVGEILAQYLEENPKEAGIIVEKVILAAKA 297

Query: 428 ERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
               ++ +  V RK+ +    LPGKLADCS++     E+++VEGDSAGG+AKQ RNR+ Q
Sbjct: 298 RIAAKKAREMVQRKSVLGSTSLPGKLADCSESDPEICEIYLVEGDSAGGTAKQGRNRAFQ 357

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-------------RSQYREEDLR 534
           A+LPLRGKILNV  A   +I  N++I +++ ALG                      + LR
Sbjct: 358 AILPLRGKILNVEKAQEHRILENEEIRNMITALGVSFGVAADPENGIEADSKALNIKKLR 417

Query: 535 YEKVIIMTDADVDGAHIASLL 555
           Y KVIIMTDADV G+HI +LL
Sbjct: 418 YHKVIIMTDADVXGSHIRTLL 438


>gi|312271728|gb|ADQ56219.1| DNA gyrase subunit B [Vibrio cholerae]
          Length = 373

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 127/384 (33%), Positives = 207/384 (53%), Gaps = 15/384 (3%)

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           GY   I V++  +  ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++S
Sbjct: 1   GYCKDIVVTIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVS 59

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+++ +T+ R   + +Q +  G+P +PL        + GT + F P
Sbjct: 60  GGLHGVGVSVVNALSEKVLLTIYRGGKVHTQTYHHGVPQAPLAVVGDT-ERTGTTVRFWP 118

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V    + ++E  +K      + F + GG++ 
Sbjct: 119 SAQTFTN-IEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEGGIQA 171

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++     N++ I  ++F    E++     +VE A+ W +     I  + N I   +GGTH
Sbjct: 172 FVTHLNRNKTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTH 229

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  Y +      K   +   DD       ++SV + +P+F+ QTK KLV
Sbjct: 230 LAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 289

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE+A+ +    +L +NP EA  +   +I+        R+ +    RK A+   
Sbjct: 290 SSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLA 349

Query: 448 RLPGKLADCSQNIAHGTELFIVEG 471
            LPGKLADC +     +EL+IVEG
Sbjct: 350 GLPGKLADCQEKDPALSELYIVEG 373


>gi|29652725|gb|AAO87332.1| DNA gyrase B [Listeria monocytogenes]
          Length = 206

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 92/203 (45%), Positives = 125/203 (61%), Gaps = 2/203 (0%)

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 6   RKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILN 65

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 66  VEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTL 125

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+K
Sbjct: 126 FYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYK 183

Query: 619 GLGEMLASQLKETAMDANKRTLL 641
           GLGEM   QL +T M+   RTLL
Sbjct: 184 GLGEMNPEQLWDTTMNPEHRTLL 206


>gi|29652697|gb|AAO87318.1| DNA gyrase B [Listeria monocytogenes]
          Length = 207

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 92/203 (45%), Positives = 125/203 (61%), Gaps = 2/203 (0%)

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 7   RKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILN 66

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 67  VEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTL 126

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+K
Sbjct: 127 FYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYK 184

Query: 619 GLGEMLASQLKETAMDANKRTLL 641
           GLGEM   QL +T M+   RTLL
Sbjct: 185 GLGEMNPEQLWDTTMNPEHRTLL 207


>gi|301477628|dbj|BAJ12099.1| DNA gyrase subunit beta [Pandoraea sp. KOx]
          Length = 423

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 161/435 (37%), Positives = 242/435 (55%), Gaps = 29/435 (6%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL------------EKKE 197
           +SGGLHGVG+S VNALS  L +TV R       +F RG+P +              +   
Sbjct: 1   VSGGLHGVGVSCVNALSSYLKLTVRRDGKKHFMEFHRGVPQNREIDVVDGVETSPLKVLG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
              +KRGT + F  D  IFG    F    L K  +  ++L+  V+   +  +   E    
Sbjct: 61  DT-DKRGTEVHFLADETIFGKV-EFHYDILAKRMRELSFLNNGVRIRLTDQRTGKEDD-- 116

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
                F F GG+K +++   ++++++   +F    E+ G     VE A+ W +     + 
Sbjct: 117 -----FAFGGGVKGFVEFINKSKTVLHPTVFHVVGERDGI---GVEVAMQWNDSYNESVL 168

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
            + N I   +GGTH +GLR A+TR I KY   ++   K  +    DD+      +LSV +
Sbjct: 169 CFTNNIPQRDGGTHLTGLRAAMTRVINKYISESEIAKKAKVETTGDDMREGLTCVLSVKV 228

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP+F+ QTK KLVS + +  VE  +    + +L + PI+A  +   ++E +  R   RK
Sbjct: 229 PEPKFSSQTKDKLVSSEVRAPVEEYVAKALEDFLQETPIDAKIICSKIVEAARARDAARK 288

Query: 435 QREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            RE+ R+   +  + LPGKLADC +      E+++VEGDSAGGSAKQ R+R  QA+LPLR
Sbjct: 289 AREMTRRKGVLDGVGLPGKLADCQEKDPALCEIYVVEGDSAGGSAKQGRDRKFQAILPLR 348

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIA 552
           GK+LNV  A  +K+ +++QI+ L+ ALGC   +  Y  + LRY ++IIMTDADVDGAHI 
Sbjct: 349 GKVLNVEKARFDKLISSEQIVTLITALGCGIGKDDYNIDKLRYHRIIIMTDADVDGAHIR 408

Query: 553 SLLLTFFYQEMYDLI 567
           +LLLTF Y+++ +LI
Sbjct: 409 TLLLTFLYRQVPELI 423


>gi|148470302|gb|ABQ66098.1| gyrase b [uncultured bacterium]
          Length = 417

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 159/422 (37%), Positives = 237/422 (56%), Gaps = 13/422 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFDN+ Y++SGGLHGVG+SVVNALS+ L + + +   I  Q + +G P 
Sbjct: 1   EVIMTVLHAGGKFDNNLYKVSGGLHGVGVSVVNALSETLFLEIHKNGLIHRQTYHKGAPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    +   +RGT I F PD  I      F    L    +  A+L+  +      ++ 
Sbjct: 61  APLTVFGETA-QRGTIIRFWPDMTIMET-DQFSFDTLSHRFRELAFLNPVLTIHLKEEET 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
           + E       E F+F GG+++++    EN+  +   +F  KT + G+ +  V +      
Sbjct: 119 LRE-------ETFHFEGGVQSFVSFLNENKKTLHDVLFFRKTLEDGS-QFEVAFQYQEST 170

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
           EN  +  + N I T EGGTH  G R A+T+ I ++    Q  +   +  +D+    +GI+
Sbjct: 171 ENETVLGFANNIHTREGGTHVRGFRTAITKTINRFIREKQLNKGEEVRGEDVREGLMGII 230

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV I  P+F GQTK +L S      +E+ L +       ++P+ A K+ E  +  ++ R 
Sbjct: 231 SVRIPGPQFEGQTKAELGSSWVAGAMESFLSEALQEKFEEDPLTAKKIAEKAVLTAQARE 290

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK ++   RK  +    LPGKLADC ++    +EL+IVEGDSAGGSAKQ R+R  QA+
Sbjct: 291 AARKAKDLAKRKNVLEGSNLPGKLADCQESDPAKSELYIVEGDSAGGSAKQGRDRRFQAI 350

Query: 490 LPLRGKILNVASAG-SEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVD 547
           LPL+GKILNV  +   EK   N ++  L+ A+GC    +   E+ LRY K+IIMTDADVD
Sbjct: 351 LPLKGKILNVEKSRGIEKFITNDEVRALITAVGCGLGEEEFSEKKLRYHKIIIMTDADVD 410

Query: 548 GA 549
           G+
Sbjct: 411 GS 412


>gi|18147149|dbj|BAB83055.1| DNA gyrase subunit B [Marinobacterium georgiense]
          Length = 301

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 111/314 (35%), Positives = 166/314 (52%), Gaps = 16/314 (5%)

Query: 68  GTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNK 127
             D   LHH+  E++DN +DE +AG+ + I V +  +  +TV DNGRGIP + H K    
Sbjct: 1   SDDGSGLHHMVFELVDNGIDEALAGHCSEIAVIIHPDESVTVSDNGRGIPTDIH-KEEGV 59

Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187
           S  E+I+T LHAGGKFD++TY++SGGLHGVG+SVVNALS EL +T+ R   +  Q +  G
Sbjct: 60  SAAEVIMTVLHAGGKFDDNTYKVSGGLHGVGVSVVNALSSELKLTIRRAGQVHEQIYHHG 119

Query: 188 IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247
           +P  PL    +  +  GT + F+P  + F +   F    L K  +  ++L+  V+     
Sbjct: 120 VPEVPLRVVGET-DLTGTIVRFKPSEETFTN-ISFQYDILAKRLRELSFLNSGVRIRLKD 177

Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307
           ++   E       E F + GGL  +++   +N+S I+         + G     VE A+ 
Sbjct: 178 ERSGRE-------EVFEYEGGLAAFVEFLNQNKSPINKIFHFNTMHENGV---GVEVAMQ 227

Query: 308 WCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMI 364
           W +   E    + N I   +GGTH SG R ALTR +  Y E  Q  +   +S   DD   
Sbjct: 228 WNDGFQEGLHCFANNIPQRDGGTHLSGFRAALTRCLNSYIESEQLNKNGKVSTSGDDSRE 287

Query: 365 SAVGILSVFIREPE 378
             V I+SV + +P+
Sbjct: 288 GLVAIISVKVPDPK 301


>gi|18157438|dbj|BAB83771.1| DNA gyrase subunit B [Rhodobacter veldkampii]
          Length = 307

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 102/317 (32%), Positives = 163/317 (51%), Gaps = 15/317 (4%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DN +DE +AG+AN + V +  +  ++V DNGRGIP + H     
Sbjct: 1   DTDDGSGLHHMVYEVVDNGIDEALAGHANYVHVKIHADSSVSVRDNGRGIPTDIHA-GEG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALS+ L + + R       KF  
Sbjct: 60  VSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSEWLELRIWRNGKEHYAKFVH 119

Query: 187 GIPLSPLEKKEK-VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
           G  + PL         ++GT + F    + F +   +    L    +  A+L+  V+   
Sbjct: 120 GDTVEPLRVVGDAAPGEKGTEVRFLASTQTFSN-LDYVFKTLENRLRELAFLNSGVRIIL 178

Query: 246 SCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
             ++        P + E  + GG++ +++    +++ + +E      E+ G     VE A
Sbjct: 179 EDER-----PVEPLRTELMYEGGVREFVRYLDRSKASVMAEPIFITGERGGI---GVEVA 230

Query: 306 IAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDL 362
           + W +     +  + N I   +GGTH +G R ALTR I  YA+ +    K  +    DD 
Sbjct: 231 MWWNDSYHETVLPFTNNIPQRDGGTHLAGFRGALTRTINAYAQSSGIAKKEKVDFTGDDA 290

Query: 363 MISAVGILSVFIREPEF 379
                 +LSV + +P+F
Sbjct: 291 REGLTCVLSVKVPDPKF 307


>gi|154347396|dbj|BAF74639.1| DNA gyrase subunit B [Streptobacillus moniliformis]
          Length = 438

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 172/443 (38%), Positives = 231/443 (52%), Gaps = 22/443 (4%)

Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187
           S +E+I+T LHAGGKFDNS Y+ SGGLHGVGISVVNALS++L  TV R   +  Q FS+G
Sbjct: 1   SRVEVIMTVLHAGGKFDNSNYQFSGGLHGVGISVVNALSEKLEATVTRDGKVVRQIFSKG 60

Query: 188 IPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
             ++   +  K      GT I F+PD  IF     FD   L +  +  AYL+  +K    
Sbjct: 61  NAITEALEIGKAPAKAHGTTIKFKPDADIFETI-QFDYDILQRRLKELAYLNQGIKIILI 119

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG------KTEKKGTHRG 300
             +    K    ++E FYF GG+  ++   +    +I   I+        + E       
Sbjct: 120 DAR----KPEKVKEEVFYFEGGIVDFVTELVGEDKIIEDVIYMKDRVMLTEGEVDDEGNP 175

Query: 301 ------TVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR 353
                  VE A+ +      I   + N I T +GGTH SGLR ALTR I   A    +K 
Sbjct: 176 IPDKYSEVEIAMIYKNSQSTIEYSFVNNINTSDGGTHVSGLRTALTRTINDLAREASSKN 235

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
                 +D+    V +LS+   EP+F  QTK KL S +A   V          YL  +P 
Sbjct: 236 EFK--GEDVREGLVYVLSLKFPEPQFESQTKAKLGSSEATSIVSGVFGSKLKMYLEDHPK 293

Query: 414 EATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
           +   +++ +    + R   ++ R+ V +K       LPGKLADC       +E+FIVEGD
Sbjct: 294 DCKTIIDKIAISKQAREAAKRARDLVTKKNEFSLGGLPGKLADCQSKNPEESEIFIVEGD 353

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           SAGGSAKQ R +  QA+LPLRGKILNV  A   KI  N +I  ++ A G     ++  E 
Sbjct: 354 SAGGSAKQGRFKEYQAILPLRGKILNVEKANEHKILENSEIKAMITAFGAGFGDRFDIEK 413

Query: 533 LRYEKVIIMTDADVDGAHIASLL 555
           LRY KVIIMTDADVDG+HI +LL
Sbjct: 414 LRYHKVIIMTDADVDGSHIRTLL 436


>gi|119370000|gb|ABL68014.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 163/430 (37%), Positives = 242/430 (56%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKF  S+Y++SGGLHGVG+SVVNALSD L + + R   +  Q++  G PL
Sbjct: 1   EVIMTVLHAGGKFGASSYKVSGGLHGVGVSVVNALSDYLLLIIHRDGKVHRQEYRLGDPL 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL        +RGT I F+P  +IF     F+   L K  +  ++L+  V+     ++E
Sbjct: 61  APLAPVGP-SEQRGTTIRFKPSAQIF-THIQFNHDILAKRLRELSFLNSGVRIELIDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                     + F   GGL+ +++    +R+ +   I   KT+       T++ A+ W +
Sbjct: 119 NT-------SDVFQHEGGLQAFVKYLNRSRTPVHESIPWFKTQDGPV---TIKVALQWND 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMISAV 367
                +  Y N I   +GGTH +G R ALTR +  Y   E++  K  +    DD      
Sbjct: 169 SYQESMFCYTNNIPQKDGGTHLAGFRSALTRTLNDYIEKEMSAKKDKVPTTGDDAREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERS 426
            ILSV + +P+F+ QTK KLVS + +  VE A+      +L+++P +A  ++  ++    
Sbjct: 229 AILSVKLPDPKFSSQTKDKLVSSEVKGIVEAAVSAKLQDFLLEHPQDAKAIIAKMLEAAR 288

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +E+FIVEGDSAGGSAKQ R+R  
Sbjct: 289 AREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSEIFIVEGDSAGGSAKQGRDRRT 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++ ++  L+ ALGC       +   LRY +VIIMTDAD
Sbjct: 349 QAILPLKGKILNVEKARFDKMLSSAEVGTLITALGCGIGKDDFDLAKLRYHRVIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|312271740|gb|ADQ56225.1| DNA gyrase subunit B [Vibrio cholerae]
          Length = 373

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 128/384 (33%), Positives = 207/384 (53%), Gaps = 15/384 (3%)

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           GY   I V++  +  ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++S
Sbjct: 1   GYCKDIVVTIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVS 59

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+++ +T+ R   I +Q +  G+P +PL        + GT + F P
Sbjct: 60  GGLHGVGVSVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLTVVGDT-ERTGTTVRFWP 118

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V    + ++E  +K      + F + GG++ 
Sbjct: 119 SAQTFTN-IEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEGGIQA 171

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++     N++ I  ++F    E++     +VE A+ W +     I  + N I   +GGTH
Sbjct: 172 FVTHLNRNKTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTH 229

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  Y +      K   +   DD       ++SV + +P+F+ QTK KLV
Sbjct: 230 LAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 289

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE+A+ +    +L +NP EA  +   +I+        R+ +    RK A+   
Sbjct: 290 SSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLA 349

Query: 448 RLPGKLADCSQNIAHGTELFIVEG 471
            LPGKLADC +     +EL+IVEG
Sbjct: 350 GLPGKLADCQEKDPALSELYIVEG 373


>gi|312271748|gb|ADQ56229.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271804|gb|ADQ56257.1| DNA gyrase subunit B [Vibrio cholerae]
          Length = 373

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 128/384 (33%), Positives = 208/384 (54%), Gaps = 15/384 (3%)

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           GY   I V++  +  ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++S
Sbjct: 1   GYCKDIVVTIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVS 59

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+++ +T+ R   I +Q +  G+P +PL    +   + GT + F P
Sbjct: 60  GGLHGVGVSVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGET-ERTGTTVRFWP 118

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V    + ++E  +K      + F + GG++ 
Sbjct: 119 SAQTFTN-IEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEGGIQA 171

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++     N++ I  ++F    E++     +VE A+ W +     I  + N I   +GGTH
Sbjct: 172 FVTHLNRNKTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTH 229

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  Y +      K   +   DD       ++SV + +P+F+ QTK KLV
Sbjct: 230 LAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 289

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE+A+ +    +L +NP EA  +   +I+        R+ +    RK A+   
Sbjct: 290 SSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLA 349

Query: 448 RLPGKLADCSQNIAHGTELFIVEG 471
            LPGKLADC +     +EL+IVEG
Sbjct: 350 GLPGKLADCQEKDPALSELYIVEG 373


>gi|312271654|gb|ADQ56182.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271664|gb|ADQ56187.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271696|gb|ADQ56203.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271882|gb|ADQ56296.1| DNA gyrase subunit B [Vibrio cholerae]
          Length = 373

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 128/384 (33%), Positives = 207/384 (53%), Gaps = 15/384 (3%)

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           GY   I V++  +  ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++S
Sbjct: 1   GYCKDIVVTIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVS 59

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+++ +T+ R   I +Q +  G+P +PL        + GT + F P
Sbjct: 60  GGLHGVGVSVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDT-ERTGTTVRFWP 118

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V    + ++E  +K      + F + GG++ 
Sbjct: 119 SAQTFTN-IEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEGGIQA 171

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++     N++ I  ++F    E++     +VE A+ W +     I  + N I   +GGTH
Sbjct: 172 FVTHLNRNKTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTH 229

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  Y +      K   +   DD       ++SV + +P+F+ QTK KLV
Sbjct: 230 LAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 289

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE+A+ +    +L +NP EA  +   +I+        R+ +    RK A+   
Sbjct: 290 SSEVKSAVESAMNEKLADFLAENPSEAKHVCSKIIDAARAREAARKAREMTRRKGALDLA 349

Query: 448 RLPGKLADCSQNIAHGTELFIVEG 471
            LPGKLADC +     +EL+IVEG
Sbjct: 350 GLPGKLADCQEKDPALSELYIVEG 373


>gi|190148850|gb|ACE63400.1| DNA gyrase B subunit [Pseudonocardia hydrocarbonoxydans]
          Length = 434

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 149/440 (33%), Positives = 235/440 (53%), Gaps = 21/440 (4%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+ +Y +SGGLHGVG+SVVNALS  L   +     ++ Q ++R IP 
Sbjct: 1   EVIMTVLHAGGKFDSDSYAVSGGLHGVGVSVVNALSVALDAEIHTDGFVWRQHYARSIPG 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
              +   +   + G+ IT+  DP IF     ++   + +  Q  A+L+  +      ++ 
Sbjct: 61  PLRK--GEATTRTGSSITYWADPDIFETTT-YNLETIRRRLQEMAFLNKGLTMVLRDERN 117

Query: 251 IAEKYGIPEKE-----------EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
               +   E +            + +P GL+ ++    +++  I  ++ +   E  G   
Sbjct: 118 GEANHDAEEPDAEGYVAKTVENVYCYPNGLEDFVAHLNKSKDPIHKKLVSFSGEADGH-- 175

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
             +E A+ W       + ++ NTI T EGGTHE G R ALT  + +YA   +    +  +
Sbjct: 176 -ALEVAMQWNSGYTESVYTFANTINTHEGGTHEEGFRSALTSTVNRYARAQKLLKDKDPA 234

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           +  DD+      I+SV ++EP+F GQTKTKL + + +  V+    +    +  +NP EA 
Sbjct: 235 LSGDDIREGLAAIVSVKVKEPQFEGQTKTKLGNTEVKSFVQRVSNEWLTDWFERNPAEAK 294

Query: 417 KLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            ++   V         R+ +  V RK+A     LPGKLADC       +E++IVEGDSAG
Sbjct: 295 IIVNKSVQSAQARAAARKARELVRRKSATDIGGLPGKLADCRSTDPVRSEVYIVEGDSAG 354

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           GSAK  R+   QA+LP+RGKI+NV  A  +++  N ++  ++ ALG     ++    LRY
Sbjct: 355 GSAKSGRDSMFQAILPIRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDLSKLRY 414

Query: 536 EKVIIMTDADVDGAHIASLL 555
            KV++MTDADVDG+HI +LL
Sbjct: 415 HKVVLMTDADVDGSHIRTLL 434


>gi|148470221|gb|ABQ66058.1| gyrase b [uncultured bacterium]
          Length = 421

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 175/430 (40%), Positives = 240/430 (55%), Gaps = 14/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKF+ + Y++SGGLHGVG+SVVNALS+ L + + R       +F  G P 
Sbjct: 1   EVIMTVLHAGGKFEQNAYKVSGGLHGVGVSVVNALSEWLELRIWRSGQEHKMRFHDGEPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL        KRGT +TF P P+ F     FD A L    +  A+L+  V    S  + 
Sbjct: 61  APLALVGPANGKRGTEVTFLPSPRTFTK-TEFDYATLEHRLRELAFLNSGVTIRLSDQRG 119

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
           + +K         ++ GGL+ +++     ++ +         E+ G    TV  A++W +
Sbjct: 120 VEKKESK-----LHYEGGLEAFVRYLDRAKNGLIPAPLLITGERDGI---TVXAALSWND 171

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR + KYAE +    K  + I  DD      
Sbjct: 172 SYHESMLCFTNNIPQRDGGTHLAGFRAALTRVVIKYAEDSGIAKKEKVQISGDDCREGLT 231

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE+   D     +     EA  ++  V+E + 
Sbjct: 232 CVLSVKVPDPKFSSQTKDKLVSSEVRPVVESVAADQIGTLVRGASGEAKTVVGKVVEAAA 291

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK RE   RK A     LPGKLADC +      ELFIVEGDSAGGSAKQARNR+N
Sbjct: 292 AREAARKARELTRRKGAFDSASLPGKLADCQERDPAKCELFIVEGDSAGGSAKQARNRNN 351

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QAVLPLRGKILNV  A  +K+ ++  I  L+ ALG      ++  E LRY K+IIMTDAD
Sbjct: 352 QAVLPLRGKILNVERARFDKMLSSDAIATLITALGTSVGPEEFNPEKLRYHKIIIMTDAD 411

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 412 VDGSHIRTLL 421


>gi|148971283|gb|ABR20179.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 165/430 (38%), Positives = 245/430 (56%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD S+Y++SGGLHGVG+SVVNALSD+L +T+ R   +  Q++  G PL
Sbjct: 1   EVIMTVLHAGGKFDASSYKVSGGLHGVGVSVVNALSDQLQLTIHRDGKVHRQEYHLGTPL 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL        +RGT I F+P  +IF     F+   L K  +  ++L+  V+     ++E
Sbjct: 61  APLAVVGP-SEQRGTTIRFKPSAEIF-THIQFNYEILAKRLRELSFLNSGVRIELVDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                     + F   GGL+ +++    +R+ +   +   K++       T+E A+ W +
Sbjct: 119 N-------RSDVFQHEGGLQAFVKYLNRSRTPVHDTVLWFKSQDGPV---TIEVALYWND 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                +  Y N I   +GGTH +G R ALTR +  Y E   +  K  ++   DD      
Sbjct: 169 SYQESMFCYTNNIPQKDGGTHLAGFRSALTRTLNDYIEKESSAKKDKLTTTGDDAREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERS 426
            ILSV + +P+F+ QTK KLVS + +  VE A+      +L+++P EA  ++  +I    
Sbjct: 229 AILSVKLPDPKFSSQTKDKLVSSEVKGIVEAAVGTKLQDFLLEHPQEAKAIVAKIIEAAR 288

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +E+FIVEGDSAGGSAKQ R+R  
Sbjct: 289 AREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSEIFIVEGDSAGGSAKQGRDRRT 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  +  +K+  + ++  L+ ALGC   +  +    LRY +VIIMTDAD
Sbjct: 349 QAILPLKGKILNVEKSRFDKMLASAEVGTLITALGCGIGKDDFDIAKLRYHRVIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|312271596|gb|ADQ56153.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271598|gb|ADQ56154.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271604|gb|ADQ56157.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271606|gb|ADQ56158.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271608|gb|ADQ56159.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271610|gb|ADQ56160.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271612|gb|ADQ56161.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271616|gb|ADQ56163.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271618|gb|ADQ56164.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271624|gb|ADQ56167.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271626|gb|ADQ56168.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271628|gb|ADQ56169.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271630|gb|ADQ56170.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271632|gb|ADQ56171.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271634|gb|ADQ56172.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271636|gb|ADQ56173.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271640|gb|ADQ56175.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271642|gb|ADQ56176.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271648|gb|ADQ56179.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271652|gb|ADQ56181.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271662|gb|ADQ56186.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271666|gb|ADQ56188.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271668|gb|ADQ56189.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271670|gb|ADQ56190.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271672|gb|ADQ56191.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271674|gb|ADQ56192.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271676|gb|ADQ56193.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271680|gb|ADQ56195.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271682|gb|ADQ56196.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271686|gb|ADQ56198.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271688|gb|ADQ56199.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271690|gb|ADQ56200.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271694|gb|ADQ56202.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271698|gb|ADQ56204.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271700|gb|ADQ56205.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271702|gb|ADQ56206.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271706|gb|ADQ56208.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271708|gb|ADQ56209.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271710|gb|ADQ56210.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271716|gb|ADQ56213.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271718|gb|ADQ56214.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271720|gb|ADQ56215.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271722|gb|ADQ56216.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271724|gb|ADQ56217.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271726|gb|ADQ56218.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271730|gb|ADQ56220.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271732|gb|ADQ56221.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271734|gb|ADQ56222.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271736|gb|ADQ56223.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271738|gb|ADQ56224.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271742|gb|ADQ56226.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271744|gb|ADQ56227.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271746|gb|ADQ56228.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271750|gb|ADQ56230.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271752|gb|ADQ56231.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271754|gb|ADQ56232.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271756|gb|ADQ56233.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271758|gb|ADQ56234.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271760|gb|ADQ56235.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271762|gb|ADQ56236.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271764|gb|ADQ56237.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271766|gb|ADQ56238.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271768|gb|ADQ56239.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271774|gb|ADQ56242.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271776|gb|ADQ56243.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271778|gb|ADQ56244.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271780|gb|ADQ56245.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271782|gb|ADQ56246.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271784|gb|ADQ56247.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271786|gb|ADQ56248.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271788|gb|ADQ56249.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271790|gb|ADQ56250.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271792|gb|ADQ56251.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271794|gb|ADQ56252.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271796|gb|ADQ56253.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271798|gb|ADQ56254.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271800|gb|ADQ56255.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271802|gb|ADQ56256.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271806|gb|ADQ56258.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271810|gb|ADQ56260.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271814|gb|ADQ56262.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271818|gb|ADQ56264.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271820|gb|ADQ56265.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271822|gb|ADQ56266.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271824|gb|ADQ56267.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271826|gb|ADQ56268.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271830|gb|ADQ56270.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271832|gb|ADQ56271.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271834|gb|ADQ56272.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271836|gb|ADQ56273.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271838|gb|ADQ56274.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271840|gb|ADQ56275.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271844|gb|ADQ56277.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271846|gb|ADQ56278.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271848|gb|ADQ56279.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271850|gb|ADQ56280.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271852|gb|ADQ56281.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271854|gb|ADQ56282.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271856|gb|ADQ56283.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271858|gb|ADQ56284.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271860|gb|ADQ56285.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271866|gb|ADQ56288.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271868|gb|ADQ56289.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271870|gb|ADQ56290.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271872|gb|ADQ56291.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271874|gb|ADQ56292.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271876|gb|ADQ56293.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271880|gb|ADQ56295.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271884|gb|ADQ56297.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271886|gb|ADQ56298.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271888|gb|ADQ56299.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271890|gb|ADQ56300.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271892|gb|ADQ56301.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271894|gb|ADQ56302.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271896|gb|ADQ56303.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271898|gb|ADQ56304.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271900|gb|ADQ56305.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271902|gb|ADQ56306.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271906|gb|ADQ56308.1| DNA gyrase subunit B [Vibrio cholerae]
          Length = 373

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 128/384 (33%), Positives = 207/384 (53%), Gaps = 15/384 (3%)

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           GY   I V++  +  ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++S
Sbjct: 1   GYCKDIVVTIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVS 59

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+++ +T+ R   I +Q +  G+P +PL        + GT + F P
Sbjct: 60  GGLHGVGVSVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDT-ERTGTTVRFWP 118

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V    + ++E  +K      + F + GG++ 
Sbjct: 119 SAQTFTN-IEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEGGIQA 171

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++     N++ I  ++F    E++     +VE A+ W +     I  + N I   +GGTH
Sbjct: 172 FVTHLNRNKTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTH 229

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  Y +      K   +   DD       ++SV + +P+F+ QTK KLV
Sbjct: 230 LAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 289

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE+A+ +    +L +NP EA  +   +I+        R+ +    RK A+   
Sbjct: 290 SSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLA 349

Query: 448 RLPGKLADCSQNIAHGTELFIVEG 471
            LPGKLADC +     +EL+IVEG
Sbjct: 350 GLPGKLADCQEKDPALSELYIVEG 373


>gi|312271614|gb|ADQ56162.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271658|gb|ADQ56184.1| DNA gyrase subunit B [Vibrio cholerae O395]
 gi|312271660|gb|ADQ56185.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271712|gb|ADQ56211.1| DNA gyrase subunit B [Vibrio cholerae]
          Length = 373

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 129/384 (33%), Positives = 208/384 (54%), Gaps = 15/384 (3%)

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           GY   I V++  +  ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++S
Sbjct: 1   GYCKDIVVTIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVS 59

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+++ +T+ R   I SQ +  G+P +PL    +   + GT + F P
Sbjct: 60  GGLHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGET-ERTGTTVRFWP 118

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V    + ++E  +K      + F + GG++ 
Sbjct: 119 SAQTFTN-IEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEGGIQA 171

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++     N++ I  ++F    E++     +VE A+ W +     I  + N I   +GGTH
Sbjct: 172 FVTHLNRNKTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTH 229

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  Y +      K   +   DD       ++SV + +P+F+ QTK KLV
Sbjct: 230 LAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 289

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE+A+ +    +L +NP EA  +   +I+        R+ +    RK A+   
Sbjct: 290 SSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLA 349

Query: 448 RLPGKLADCSQNIAHGTELFIVEG 471
            LPGKLADC +     +EL+IVEG
Sbjct: 350 GLPGKLADCQEKDPALSELYIVEG 373


>gi|148971393|gb|ABR20234.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 162/428 (37%), Positives = 233/428 (54%), Gaps = 13/428 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFDNS Y++SGGL+GVG+ VVNALS  L + + ++  +  Q + +G+P 
Sbjct: 1   EVIMTVLHAGGKFDNSLYKVSGGLYGVGVPVVNALSRRLELEIYQEGRLHRQVYHQGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL         RGT I F PD  I      F    L    +  A+L+  +         
Sbjct: 61  APLSVVG-TTALRGTSIRFWPDLSIMET-DTFLFDTLAHRFRELAFLNPILTIV------ 112

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
              +     +E F+F GG+K+Y +   EN+  I  E+   + E     +  V +      
Sbjct: 113 -LREEESLREETFHFEGGIKSYNEFLNENKKTIH-EVLFFRRELPSGAQFEVAFQYQETT 170

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
           +N  I  + N I T EGGTH  G R ALTR I ++ +  Q  +   +  +D+      ++
Sbjct: 171 DNETILGFANNIFTKEGGTHIKGFRTALTRVINRFIKDKQLNKGEELRGEDIREGLTAVV 230

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV I +P+F GQTK KL S      +E  L +       + P  A K+ +  I+ +  R 
Sbjct: 231 SVRIPDPQFEGQTKAKLGSSWVSGAMETFLAEEMQERFEEFPQIAKKIADKAIQTAMARE 290

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK +E   RK  +    LPGKLADC ++     EL+IVEGDSAGGSAKQ R+R  QA+
Sbjct: 291 AARKAKELAKRKNVLEGSNLPGKLADCQESDPAKCELYIVEGDSAGGSAKQGRDRKFQAI 350

Query: 490 LPLRGKILNVASA-GSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVD 547
           LPL+GKILNV  A G+E+   + ++  L+ A+GC   ++   +  LRY K+IIMTDADVD
Sbjct: 351 LPLKGKILNVEKAGGAERFVTHDEVRALITAVGCGLGNEEYSQKNLRYHKIIIMTDADVD 410

Query: 548 GAHIASLL 555
           G+HI +LL
Sbjct: 411 GSHIRTLL 418


>gi|33187319|gb|AAP97522.1| DNA gyrase subunit B [Campylobacter jejuni subsp. doylei]
          Length = 405

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 165/419 (39%), Positives = 233/419 (55%), Gaps = 18/419 (4%)

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFD  TY++SGGLHGVG+SVVNALS +L  TV R   I+ Q+FS G  +S   
Sbjct: 1   TVLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNKEIYRQEFSEGKVISEFG 60

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
              K +   GT I F PD +IF     FD   L K  +  AYL+ ++   +  ++     
Sbjct: 61  VIGKSKK-TGTTIEFWPDDQIFEVT-EFDYEILAKRFRELAYLNPKITINFKDNR----- 113

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE 314
             + + E F+F GG+  ++    +  +L  +  F+   E        VE A+ + +   E
Sbjct: 114 --VGKHESFHFEGGISQFVTDLNKKEALTKAIFFSVDEED-----VNVEVALLYNDTYSE 166

Query: 315 IT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
              S+ N I T +GGTHE+G R+ LTR I  Y E      ++   I  +D+    + ++S
Sbjct: 167 NLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGEDVREGLIAVVS 226

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V + EP+F GQTK KL S   +  V  A  +    Y  +NP+EA  ++   +  +  R  
Sbjct: 227 VKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTKYFEENPVEAKAIMNKALMAARGREA 286

Query: 432 RRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +K RE   +K ++    LPGKLADC       +E+++VEGDSAGGSAKQ R RS QA+L
Sbjct: 287 AKKARELTRKKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAIL 346

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549
           PLRGKILNV  A  +KI  ++QI +++ A GC     +    LRY K+IIMTDADVDG+
Sbjct: 347 PLRGKILNVEKARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDGS 405


>gi|4588023|gb|AAD25956.1|AF090331_1 gyrase B subunit [Bacillus thuringiensis]
          Length = 404

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 160/414 (38%), Positives = 233/414 (56%), Gaps = 14/414 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKFD   Y++SGGLHGVG SVVNALS EL V V R   I  QK+ RGIP++ L+   
Sbjct: 1   HAGGKFDGGGYKVSGGLHGVGASVVNALSTELEVFVHRDGKIHYQKYQRGIPVADLKVIG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
              +K GT   F+PDP+IF +   ++   L    +  A+L+  +K      +E  +K   
Sbjct: 61  DT-DKTGTITRFKPDPEIFKETTEYEFDTLATRVRELAFLNRNIKLTIEDKREHKQK--- 116

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-T 316
              +EF++ GG+K+Y++    ++  I  E    +  K G     VE A+ + E       
Sbjct: 117 ---KEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIY 170

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFI 374
           S+ N I T EGGTHE G + ALTR I  Y       +    ++  +D+      I+S+  
Sbjct: 171 SFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKH 230

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRR 433
             P+F GQTKTKL + +A+   E+   + F+ +L++NP  A K+++   +        ++
Sbjct: 231 PNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKK 290

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            +    RK+A+    LPGKLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+
Sbjct: 291 ARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLK 350

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVD 547
           GKI+NV  A  +KI +N ++  ++ A+G      +  E  RY KVIIMTDADVD
Sbjct: 351 GKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVD 404


>gi|148971325|gb|ABR20200.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 162/430 (37%), Positives = 240/430 (55%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD S+Y++SGGLHGVG+SV NALSD L + + R   +  Q++  G PL
Sbjct: 1   EVIMTVLHAGGKFDASSYKVSGGLHGVGVSVDNALSDYLLLIIHRDGKVHRQEYRLGDPL 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL        +RGT I F+P  +IF     F+   L K  +  ++L+  V+     ++E
Sbjct: 61  APLAPVGP-SEQRGTTIRFKPSAQIF-THIQFNHDILAKRLRELSFLNSGVRIELIDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                     + F   GGL+ + +    +R+ +   I   KT+       ++E A+ W +
Sbjct: 119 NT-------SDVFQHEGGLQAFRKYLNRSRTPVHESIPWFKTQDGPV---SIEVALQWND 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMISAV 367
                +  Y N I   +GGTH +G R ALTR +  Y   E++  K  +    DD      
Sbjct: 169 SYQESMFCYTNNIPQKDGGTHLAGFRSALTRTLNDYIEKEMSAKKDKVPTTGDDAREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERS 426
            ILSV + +P+F+ Q K KLVS + +  VE A+      +L+++P +A  ++  ++    
Sbjct: 229 AILSVQLPDPKFSSQAKDKLVSSEVKGIVEAAVGAKLQDFLLEHPQDAKAIIAKMLEAAR 288

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +E+FIVEGDSAGGSAKQ R+R  
Sbjct: 289 AREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSEIFIVEGDSAGGSAKQGRDRRT 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++ ++  L+ ALGC       +   LRY +VIIMTDAD
Sbjct: 349 QAILPLKGKILNVEKARFDKMLSSAEVGTLITALGCGIGKDDFDLAKLRYHRVIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|148971339|gb|ABR20207.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 168/430 (39%), Positives = 242/430 (56%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y+ISGGLHGVG+SVVNALS  L +T+ R       +F  G  +
Sbjct: 1   EVIMTVLHAGGKFDSNSYKISGGLHGVGVSVVNALSTWLKLTIYRDGKRHFMEFREGDAV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL         RGT I F P P  FG    F    L +  +  ++L+  V       + 
Sbjct: 61  APLAVVGDSPK-RGTEIHFLPSPLTFGT-IEFHYDILARRLRELSFLNNGVSILLKDLRH 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       E F F GG++ +++     R+++   +F    EK+G    TVE A+ W E
Sbjct: 119 GQE-------ENFSFNGGVRGFVEYLNRTRTVLHPTVFHSVGEKEGI---TVEVAMQWNE 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH + LR A+TR +  + E  +   K  +    DD+     
Sbjct: 169 SYQENVLCFTNNIPQRDGGTHLTALRAAMTRTLNHFIEENELARKAKVETTGDDMREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE  + D    +L++ P EA  ++  +IE + 
Sbjct: 229 CVLSVKVPDPKFSSQTKEKLVSSEVRPAVEEVVSDQMRSFLLEKPAEARIIVGKIIEAAR 288

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK RE   RK A+  L LPGKLADC +      E+++VEGDSA GSAKQ R+R  
Sbjct: 289 AREAARKARELTRRKGALDGLGLPGKLADCQEKDPAQCEIYLVEGDSAWGSAKQGRDRRF 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q+I+ L+ ALG          E +RY ++IIMTDAD
Sbjct: 349 QAILPLKGKILNVERARFDKLVSSQEIVTLITALGTGIGKDEYSPEKVRYHRIIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|148470242|gb|ABQ66068.1| gyrase b [uncultured bacterium]
 gi|148470258|gb|ABQ66076.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 156/428 (36%), Positives = 230/428 (53%), Gaps = 13/428 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFDN+TY++SGGLHGVG+SVVNALS+ L + + ++   F Q + +G P 
Sbjct: 1   EVIMTVLHAGGKFDNNTYKVSGGLHGVGVSVVNALSETLLLDIDQKGQHFHQVYHKGAPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           SPL       ++ GT I F PD  I      F    L    +  ++L+  +    + ++ 
Sbjct: 61  SPLAVTG-SSDRTGTAIRFYPDLTIMET-DQFSYDVLAHRFRELSFLNPSLTITLAEEET 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
           + E         F+  GG++++L    EN+ ++   +F  K  + G     + +      
Sbjct: 119 LRE-------SVFHDEGGIRSFLSFVNENKRVLHEPLFFRKVLENGAT-FEISFQYQDTT 170

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
           +   + SY N I T EGG+H  G R ALT+ + ++       +   +  +D+      I+
Sbjct: 171 DAETLLSYVNNIPTREGGSHVRGFRSALTKVVNRFIRDKNLNKGEEVKGEDIREGLSAIV 230

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           S+ I  P+F GQTK KL S      +E  L +  +    +    A  + +  I  ++ R 
Sbjct: 231 SIKIPNPQFEGQTKAKLGSSWVAGAMETFLSESLEDAFEKQGAIARAIADKAILSAQARE 290

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK RE   RK  +    LPGKLADC +N    +EL+IVEGDSAGGSAKQ R+R  QA+
Sbjct: 291 AARKARELTKRKNVLEGSNLPGKLADCQENDPAKSELYIVEGDSAGGSAKQGRDRRFQAI 350

Query: 490 LPLRGKILNVASAG-SEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVD 547
           LPL+GKILNV      EK   + ++  L+ A+GC    +      LRY K+IIMTDADVD
Sbjct: 351 LPLKGKILNVEKTKGVEKFITHDEVRALITAVGCGLGDEDFSLKNLRYHKIIIMTDADVD 410

Query: 548 GAHIASLL 555
           G+HI +LL
Sbjct: 411 GSHIRTLL 418


>gi|297803548|ref|XP_002869658.1| hypothetical protein ARALYDRAFT_329101 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315494|gb|EFH45917.1| hypothetical protein ARALYDRAFT_329101 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1089

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 124/656 (18%), Positives = 226/656 (34%), Gaps = 83/656 (12%)

Query: 56  EPVRMRPGMYIGGTDE---------------------KALHHLFSEVIDNAMDEVIAGYA 94
           E + + P +Y+G T E                      A   +  E++ NA D       
Sbjct: 12  EHILLHPDLYLGSTKEQTQTVFVYENGEMVKREVNFVPAFLRIIDEILINAADNKQRDPC 71

Query: 95  -NLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEIS 151
            + + V +D   G + + ++G GIPV             I+   +       D++  +I+
Sbjct: 72  MDSLRVFIDDEKGKICIYNSGSGIPVIILDNDN--YLPHILFGRILTTSVIHDDNEKKIT 129

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GG +G+G  + N  S E  +  A     F++ F   +           ++   T+I+F P
Sbjct: 130 GGRNGLGAKLTNIFSSEFKIETADGENKFTKVFRNNMKDEDDHLISSCKD-TFTQISFTP 188

Query: 212 DPKIFGDKA--GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           D +    K       + + K     A   G         K       IP      + G  
Sbjct: 189 DLQKLNMKCFGESMVSLMRKRVLEVANFLGNSV------KVELNGVHIPSISFTNYVG-- 240

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGT 329
                    ++          ++   G      +  +   +   +  S+ N++ T  GGT
Sbjct: 241 ----LYLNSSKEPDPLPRIAEESNVDG-----WDICVTSSDGEFQQFSFVNSVATINGGT 291

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           H   +   LT  I + A+     +   + +  LM      ++  I  P F    + KL S
Sbjct: 292 HVDYVTSQLTNHIVEIAKRKN--KNTHLKTHVLMSHLWVFVNARIDSPTFDFPKREKLTS 349

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
             +    +  L + F   + ++ +    L                 ++      +     
Sbjct: 350 DQSSFISKGKLSEEFLKKVAKSAVVEKLL------------SLATFKQRLTIENLVDANH 397

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGS---AKQARNRSNQAVLPLRGKILNVASAGSEK 506
            G       +++    L + EGDSA         A NR+   V PLRGK++NV  A   +
Sbjct: 398 AGG------DLSQKCTLILTEGDSAKALPMVGMSALNRNLYGVYPLRGKLINVKKASEAR 451

Query: 507 IRNNQQIMDLVQALGCR--TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           I  N+ I D+++ +G +         + LRY +++IMTD D DG HI  L++  F+    
Sbjct: 452 ITKNKVIRDIMEIIGLKKCYNKYKNTKSLRYGRLMIMTDQDHDGTHIKGLIINLFHTFWP 511

Query: 565 DLIEQ--KHLFLISPPLFRITQ-GTKSVY-AHDEEHKQKILEEFKKHGKGKIEISRFKGL 620
            L+E     +     PL + TQ GT  +   +         +  +     K  I  +KGL
Sbjct: 512 SLLELSPSFIVEFITPLVKATQHGTHRIERIYSNPAYNNWSKTIEHD---KWSIDYYKGL 568

Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           G     +  E     +  T          N  +    +           +  +++E
Sbjct: 569 GTCTYEEACEYLAHIDNHTKEF--FWAGDNDGRSIDVAFKT---EDIAAKKIWLEE 619


>gi|312271602|gb|ADQ56156.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271678|gb|ADQ56194.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271684|gb|ADQ56197.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271692|gb|ADQ56201.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271704|gb|ADQ56207.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271770|gb|ADQ56240.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271772|gb|ADQ56241.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271808|gb|ADQ56259.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271878|gb|ADQ56294.1| DNA gyrase subunit B [Vibrio cholerae]
          Length = 373

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 129/384 (33%), Positives = 208/384 (54%), Gaps = 15/384 (3%)

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           GY   I V++  +  ++V D+GRGIP E HP+  N S  E+I+T LHAGGKFD+++Y++S
Sbjct: 1   GYCKDIVVTIHEDNSVSVSDDGRGIPTEMHPE-ENVSAAEVIMTVLHAGGKFDDNSYKVS 59

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+++ +T+ R   I +Q +  G+P +PL        + GT + F P
Sbjct: 60  GGLHGVGVSVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDT-ERTGTTVRFWP 118

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V    + ++E  +K      + F + GG++ 
Sbjct: 119 SAQTFTN-IEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEGGIQA 171

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++     N++ I  ++F    E++     +VE A+ W +     I  + N I   +GGTH
Sbjct: 172 FVTHLNRNKTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTH 229

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  Y +      K   +   DD       ++SV + +P+F+ QTK KLV
Sbjct: 230 LAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 289

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE+A+ +    +L +NP EA  +   +I+        R+ +    RK A+   
Sbjct: 290 SSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLA 349

Query: 448 RLPGKLADCSQNIAHGTELFIVEG 471
            LPGKLADC +     +EL+IVEG
Sbjct: 350 GLPGKLADCQEKDPALSELYIVEG 373


>gi|312271570|gb|ADQ56140.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271572|gb|ADQ56141.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271592|gb|ADQ56151.1| DNA gyrase subunit B [Vibrio sp. HB0308-1A5]
 gi|312271620|gb|ADQ56165.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271622|gb|ADQ56166.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271714|gb|ADQ56212.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271828|gb|ADQ56269.1| DNA gyrase subunit B [Vibrio cholerae]
          Length = 373

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 129/384 (33%), Positives = 207/384 (53%), Gaps = 15/384 (3%)

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           GY   I V++  +  ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++S
Sbjct: 1   GYCKDIVVTIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVS 59

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+++ +T+ R   I SQ +  G+P +PL        + GT + F P
Sbjct: 60  GGLHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGDT-ERTGTTVRFWP 118

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V    + ++E  +K      + F + GG++ 
Sbjct: 119 SAQTFTN-IEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEGGIQA 171

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++     N++ I  ++F    E++     +VE A+ W +     I  + N I   +GGTH
Sbjct: 172 FVTHLNRNKTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTH 229

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  Y +      K   +   DD       ++SV + +P+F+ QTK KLV
Sbjct: 230 LAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 289

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE+A+ +    +L +NP EA  +   +I+        R+ +    RK A+   
Sbjct: 290 SSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLA 349

Query: 448 RLPGKLADCSQNIAHGTELFIVEG 471
            LPGKLADC +     +EL+IVEG
Sbjct: 350 GLPGKLADCQEKDPALSELYIVEG 373


>gi|119369922|gb|ABL67975.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 163/430 (37%), Positives = 240/430 (55%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKF  S+Y++SGGLHGVG+SVVNALSD L + + R   +  Q++  G PL
Sbjct: 1   EVIMTVLHAGGKFGASSYKVSGGLHGVGVSVVNALSDYLLLIIHRDGKVHRQEYRLGDPL 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL        +RGT I F+P  +IF     F+   L K  +  ++L+  V+     ++E
Sbjct: 61  APLAPVGP-SEQRGTTIRFKPSAQIF-THIQFNHDILAKRLRELSFLNSGVRIELIDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                     + F   GGL+ +++    +R+ +   I   KT+       T++ A+ W +
Sbjct: 119 NT-------SDVFQHEGGLQAFVKYLNRSRTPVHESIPWFKTQDGPV---TIKVALQWND 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                +  Y N I   +GGTH +G R ALTR +  Y E      K  +    DD      
Sbjct: 169 SYQESMFCYTNNIPQKDGGTHLAGFRSALTRTLNDYIEKEMPAKKDKVPTTGDDAREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERS 426
            ILSV + +P+F+ QTK KLVS + +  VE A+      +L+++P +A  ++  ++    
Sbjct: 229 AILSVKLPDPKFSSQTKDKLVSSEVKGIVEAAVSAKLQDFLLEHPQDAKAIIAKMLEAAR 288

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +E+FIVEGDSAGGSAKQ R+R  
Sbjct: 289 AREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSEIFIVEGDSAGGSAKQGRDRRT 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++ ++  L+ ALGC       +   LRY +VIIMTDAD
Sbjct: 349 QAILPLKGKILNVEKARFDKMLSSAEVGTLITALGCGIGKDDFDLAKLRYHRVIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|307939332|gb|ADN95857.1| DNA gyrase B [Hymenobacter aerophilus]
          Length = 435

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 168/439 (38%), Positives = 240/439 (54%), Gaps = 21/439 (4%)

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
           I+T LHAGGKFD  +Y++SGGLHGVG+S VNALS +L VTV R   ++ Q++  GIP  P
Sbjct: 1   IMTVLHAGGKFDKDSYKVSGGLHGVGVSCVNALSQDLKVTVRRNGKVYEQEYKIGIPQYP 60

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
           + +     ++ GT++ F PD  IF +   +  A +    +  ++L+  ++   +  +E  
Sbjct: 61  VRELG-TTDEHGTQVEFLPDDTIFSEHV-YKYATIASRLRELSFLNSGIRLTLTDRREPG 118

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
           E       +EF+  GGL  ++Q                   +KG     VE A+ + +  
Sbjct: 119 ENGAEFRNDEFFSTGGLAEFVQYLDGTERHALMPAPIHVINEKGIT--PVEVALQYNDSY 176

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGI 369
              I SY N I T EGGTH +G R ALTR +K YA+ +    K  + I  +D       +
Sbjct: 177 QENIFSYVNNINTHEGGTHVAGFRSALTRTLKAYADKSGKLEKAKVEISGEDFREGLTAV 236

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEE 428
           +SV + EP+F GQTK KL + +    V  A+ +    YL +NP EA  ++E VI      
Sbjct: 237 ISVKVAEPQFEGQTKAKLGNNEVNGAVNTAVGEILAQYLEENPKEAGIIVEKVILAAKAR 296

Query: 429 RLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
              R+ +  V RK+ +    LPGKLADCS++     EL++VEGDSAGG+AKQ RNR+ QA
Sbjct: 297 IAARKAREMVQRKSVLGSTSLPGKLADCSESDPEICELYLVEGDSAGGTAKQGRNRAFQA 356

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-------------RSQYREEDLRY 535
           +LPLRGKILNV  A   +I  N++I +++ ALG                      + LRY
Sbjct: 357 ILPLRGKILNVEKAQEHRILENEEIRNMITALGVSFGVAADPELGIEADSKALNIKKLRY 416

Query: 536 EKVIIMTDADVDGAHIASL 554
            KVIIMTDADVDG+HI +L
Sbjct: 417 HKVIIMTDADVDGSHIRTL 435


>gi|301477618|dbj|BAJ12094.1| DNA gyrase subunit beta [Pandoraea sp. TA25]
          Length = 426

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 153/436 (35%), Positives = 240/436 (55%), Gaps = 27/436 (6%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK-----------VRNKRG 204
           GVG+S VNALS  L +TV R       +F +G+P +   +                +KRG
Sbjct: 1   GVGVSCVNALSTYLKLTVRRDGKKHFMEFHQGVPQNRELEMVDGVETSPLKLLGDTDKRG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F  D  IFG    +    L K  +  ++L+  V+   +  +   E         F 
Sbjct: 61  TEVHFLADETIFGKV-EYHYDILAKRMRELSFLNNGVRIRLTDQRTGKEDD-------FA 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           F GG+K +++   ++++++   +F    E+ G     VE A+ W +     +  + N I 
Sbjct: 113 FGGGVKGFVEYINKSKTVLHPTVFHVMGERDGI---GVEVAMQWNDSYNETVLCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GG+H +GLR A+TR I KY   ++   K  +    DD+      +LSV + EP+F+ 
Sbjct: 170 QRDGGSHLTGLRAAMTRVINKYIAESEIAKKAKVETTGDDMREGLTCVLSVKVPEPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK KLVS + +  VE  +    + +L + P +A  +   ++E +  R   RK RE+ R+
Sbjct: 230 QTKDKLVSSEVRAPVEEYVAKALEDFLQETPNDAKIICTKIVEAARARDAARKAREMTRR 289

Query: 442 TA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
              +  + LPGKLADC +      E+++VEGDSAGGSAKQ R+R  QA+LPLRGK+LNV 
Sbjct: 290 KGVLDGVGLPGKLADCQEKDPALCEIYVVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
            A  +K+ +++QI+ L+ ALGC   +  Y  + LRY ++IIMTDADVDGAHI +LLLTF 
Sbjct: 350 KARFDKLISSEQIVTLITALGCGIGKDDYNIDKLRYHRIIIMTDADVDGAHIRTLLLTFL 409

Query: 560 YQEMYDLIEQKHLFLI 575
           Y++  +LIE+ ++++ 
Sbjct: 410 YRQGPELIERGYVYIA 425


>gi|301477620|dbj|BAJ12095.1| DNA gyrase subunit beta [Pandoraea sputorum]
          Length = 425

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 158/436 (36%), Positives = 243/436 (55%), Gaps = 27/436 (6%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK----------- 198
           +SGGLHGVG+S VNALS  L +TV R       +F +G+P +   +              
Sbjct: 1   VSGGLHGVGVSCVNALSTYLKLTVRRDGKKHFMEFHQGVPQNRELEVVDGVETSPLKLLG 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +KRGT + F  D  IFG    +    L K  +  ++L+  V+   +  +   E     
Sbjct: 61  DTDKRGTEVHFLADETIFGKV-EYHYDILAKRMRELSFLNNGVRIRLTDQRTGKEDD--- 116

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
               F F GG+K +++   ++++++   +F    E+ G     VE A+ W +     +  
Sbjct: 117 ----FAFGGGVKGFVEYINKSKTVLHPTVFHVMGERDGI---GVEVAMQWNDSYNETVLC 169

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GG+H +GLR A+TR I KY   ++   K  +    DD+      +LSV + 
Sbjct: 170 FTNNIPQRDGGSHLTGLRAAMTRVINKYIAESEIAKKAKVETTGDDMREGLTCVLSVKVP 229

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           EP+F+ QTK KLVS + +  VE  +    + +L + P +A  +   ++E +  R   RK 
Sbjct: 230 EPKFSSQTKDKLVSSEVRAPVEEYVAKALEDFLQETPNDAKIICTKIVEAARARDAARKA 289

Query: 436 REVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE+ R+   +  + LPGKLADC +      E+++VEGDSAGGSAKQ R+R  QA+LPLRG
Sbjct: 290 REMTRRKGVLDGVGLPGKLADCQEKDPALCEIYVVEGDSAGGSAKQGRDRKFQAILPLRG 349

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIAS 553
           K+LNV  A  +K+ +++QI+ L+ ALGC   +  Y  + LRY ++IIMTDADVDGAHI +
Sbjct: 350 KVLNVEKARFDKLISSEQIVTLITALGCGIGKDDYNIDKLRYHRIIIMTDADVDGAHIRT 409

Query: 554 LLLTFFYQEMYDLIEQ 569
           LLLTF Y+++ +LIE+
Sbjct: 410 LLLTFLYRQVPELIER 425


>gi|253826386|gb|ACT36496.1| DNA gyrase subunit B [Paenibacillus mucilaginosus]
          Length = 404

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 155/415 (37%), Positives = 230/415 (55%), Gaps = 15/415 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKF    Y++SGGLHGVG+SVVNALS +L V V R+  ++ Q++  G P   +++  
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSKKLEVQVKREGKVYQQEYRCGAPQYDIKEIG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +     GT++TF PD +IF +   +D   L    +  A+L+  ++   + ++        
Sbjct: 61  E-SEMTGTQVTFWPDEEIFTETTEYDFDTLQSRIRELAFLNKGIEIVLTDER-------T 112

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
              + F + GG  ++++   +NR  +       + EK       VE A+ + +     I 
Sbjct: 113 DISQTFIYEGGTISFVEHLNQNREPVHQPPIYVEGEKDHIQ---VEDALQYNDSYTENIY 169

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
           S+ N I T EGGTHESG + ALTR + +YA       +   ++  DD+      I+SV I
Sbjct: 170 SFANNINTHEGGTHESGFKSALTRILNEYARKYNAIKESDANLSGDDVREGLTAIISVKI 229

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRR 433
            +P+F GQTKTKL + + +  VE+   +  + +L +NP  A K++E  V  +      R+
Sbjct: 230 PDPQFEGQTKTKLGNSEVRGIVESLFAEKLEEFLQENPAIAKKIVEKGVQAQRAREAARK 289

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            +    RK+A+    LPGKLADCS   A  +E++IVEGDSAGGSAKQ  +R  QA+LPLR
Sbjct: 290 ARELTRRKSALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGHDRHFQAILPLR 349

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           GKILNV  A  +KI +  +I  ++ ALG            RY K+IIMTDADVDG
Sbjct: 350 GKILNVEKARLDKILSIAEIRAIITALGTGIGEDSDISKARYHKIIIMTDADVDG 404


>gi|328349733|emb|CBY89174.1| GyrB protein [Flavobacterium sp. R-38296]
          Length = 426

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 155/432 (35%), Positives = 239/432 (55%), Gaps = 15/432 (3%)

Query: 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN 177
           V+ H K    S LE+++T + AGGKFD  +Y++SGGLHGVG+S VNALSD L  TV R+ 
Sbjct: 1   VDIHKK-EGVSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSCVNALSDHLRATVFREG 59

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            ++ Q++ +G  + P+++  +  +KRGT +TF PD  IF     +    +    +  ++L
Sbjct: 60  KVYEQEYEKGKAMYPVKQIGET-DKRGTMVTFHPDKTIFTQTIEYSYDTIAARMRELSFL 118

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +    +  +++ +K      E F+   GLK +++   + R  I S + + + EK   
Sbjct: 119 NKGITITLTDRRDVNDKG-EFASEIFHSQEGLKEFVRFLDKGRESIISHVISMEHEK--- 174

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRA 354
               VE A+ +       I SY N I T EGGTH  G R+ LTR +KKYA+ +    K  
Sbjct: 175 GEIPVEVALVYNTSYSENIFSYVNNINTHEGGTHLQGFRMGLTRTLKKYADSSGLLDKLK 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             I  DD       I+SV ++EP+F GQTKTKL + +    V  A+ +  ++YL +NP +
Sbjct: 235 FEITGDDFREGLTAIISVKVQEPQFEGQTKTKLGNREVVSPVSQAVSEMLENYLEENPND 294

Query: 415 ATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA-DCSQNIAHGTELFIVEGDS 473
           A  +++ VI  ++ R   +K RE+ ++  +           DCS+      E+++VEGDS
Sbjct: 295 AKIIVQKVILAAQARHAAKKAREMVQRKTVLGGGGLPGKLSDCSEQDPAKCEVYLVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY----- 528
           AGG+AKQ R+R  QA+LPLRGKILNV  A   K+  N++I ++  ALG    ++      
Sbjct: 355 AGGTAKQGRDRMFQAILPLRGKILNVEKAMPHKVFENEEIRNIFTALGVTIGTEEDSKAL 414

Query: 529 REEDLRYEKVII 540
             E LRY KVII
Sbjct: 415 NIEKLRYHKVII 426


>gi|312271650|gb|ADQ56180.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271816|gb|ADQ56263.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271842|gb|ADQ56276.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271862|gb|ADQ56286.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271864|gb|ADQ56287.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271904|gb|ADQ56307.1| DNA gyrase subunit B [Vibrio cholerae]
          Length = 373

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 128/384 (33%), Positives = 206/384 (53%), Gaps = 15/384 (3%)

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           GY   I V++  +  ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++S
Sbjct: 1   GYCKDIVVTIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVS 59

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+++ +T+ R   I +Q +  G+P +PL        + GT + F P
Sbjct: 60  GGLHGVGVSVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDT-ERTGTTVRFWP 118

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++E  +K      + F + GG++ 
Sbjct: 119 SAQTFTN-IEFHYDILAKRLRELSFLNSGVSIKLIDEREEDKK------DHFMYEGGIQA 171

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++     N++ I  ++F    E++     +VE A+ W +     I  + N I   +GGTH
Sbjct: 172 FVTHLNRNKTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTH 229

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  Y +      K   +   DD       ++SV + +P+F+ QTK KLV
Sbjct: 230 LAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 289

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE+A+ +    +L +NP EA  +   +I+        R+ +    RK A+   
Sbjct: 290 SSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLA 349

Query: 448 RLPGKLADCSQNIAHGTELFIVEG 471
            LPGKLADC +     +EL+IVEG
Sbjct: 350 GLPGKLADCQEKDPALSELYIVEG 373


>gi|326379142|gb|ADZ57484.1| DNA topoisomerase IV subunit B [Flavobacterium psychrophilum]
          Length = 437

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 129/474 (27%), Positives = 212/474 (44%), Gaps = 56/474 (11%)

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
            ++KM ++  YL+  +   ++ +K             F+   GLK  L+  +    ++  
Sbjct: 1   YIIKMLKNYCYLNTGLTIIYNGEK-------------FFSNNGLKDLLEENIAEEDMVYP 47

Query: 286 EIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKY 345
            I              +    +  + + E  S+ N   T +GGTH    R ++ + IK++
Sbjct: 48  IIHLLG------DDIEIAITHSKTQYSEEYYSFVNGQNTTQGGTHLGAFRESIVKTIKEF 101

Query: 346 AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA-------QRTVEN 398
                        + D+  S V  + V + EP F  QTKTKL S D        +  V +
Sbjct: 102 YN-------KPFEASDIRKSIVSAIVVRVEEPVFESQTKTKLGSTDMGPDLPSVRTFVND 154

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++   D++L +NP  A  LL  +++   ER      R++ +  A +      KL DC  
Sbjct: 155 FIKTKLDNFLHKNPETADLLLRKILQAERERKELSGIRKLAKDRAKKSNLHNKKLRDCRV 214

Query: 459 NIAH-------GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           ++          + LFI EGDSA GS  ++R+ + QAV  LRGK LN      + +  N+
Sbjct: 215 HLTDAKNARSLESTLFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSYGMSKKIVYENE 274

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +   L  AL          EDLRY  ++I TDADVDG HI  LL+TFF Q   ++I++ H
Sbjct: 275 EFNLLQAALNIE----ESMEDLRYNNIVIATDADVDGMHIRLLLITFFLQFFPEMIKEGH 330

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           L+++  PLFR+    +++Y + E+ K+  +E+     K K EI+RFKGLGE+   + K  
Sbjct: 331 LYILQTPLFRVRNKKETIYCYSEQEKRDAIEKL----KPKPEITRFKGLGEISPDEFKSF 386

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
                   L  V ++K        +  +   MG    +R  FI        ++ 
Sbjct: 387 IG--ETIRLDPVMLDKST----SIEKLLEFYMGKNTPDRQTFIINNLKV--ELD 432


>gi|148971427|gb|ABR20251.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 419

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 167/430 (38%), Positives = 246/430 (57%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+ELH+ V R   I+ Q +  G P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLNVHRDGHIYEQHYHHGTPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+       +  GT I F+P    F +   F    L K  +  ++L+  V  C+     
Sbjct: 61  NPIAVTGDTTD-SGTSIWFKPSSDTFTNIN-FHYDILAKRLRELSFLNSGVCICF----- 113

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                 +  K  F   GG+K +++    N++ I  E+F+    K      TVE ++ W +
Sbjct: 114 -DWMSAVGNKINFNMKGGIKAFVEHLNRNKNPIMPEVFSMTGVKDDV---TVELSMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R ALTR +  Y E      K  ++ I DD      
Sbjct: 170 SYQENIFCFTNNIPQKDGGTHLAGFRGALTRTLNNYIESEGYAKKAKVTTIGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERS 426
            +LSV + +P+F+ QTK KLVS + +  VE+ + + F ++L++ P  A  ++  +I    
Sbjct: 230 AVLSVKVHDPKFSSQTKDKLVSSEVKAAVESLVSEYFHNFLLERPTIAKTIVNKMIEAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                RR +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ R+R  
Sbjct: 290 AREAARRARDMTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRDRKF 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC     +Y  + +RY ++IIMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGPDEYDPDKIRYHRIIIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHIRTLL 419


>gi|148971411|gb|ABR20243.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 161/430 (37%), Positives = 250/430 (58%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD++TY++SGGLHGVG+SVVNALS+ L + + R   ++ Q++  G PL
Sbjct: 1   EVIMTVLHAGGKFDDNTYKVSGGLHGVGVSVVNALSERLFLRIRRSGALYEQEYRMGEPL 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            P+ K  +     GT I F+P  ++F +   FD   L    +  ++L+  VK   + ++ 
Sbjct: 61  YPIRKIGEATG-TGTEIRFQPSTQVFTE-TQFDYEVLANRIREISFLNSGVKIYXADER- 117

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                    +E FY  GG++ +++    NR+ + S +     E+ G     VE A+ W +
Sbjct: 118 ------NERQELFYVEGGIRAFVEYLNRNRTALHSSVCHFVGEEAGI---GVEVALQWTK 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                +  + N +   +GGTH +G R ALTR +  + E T    K  + +  DD      
Sbjct: 169 SYQETVFCFTNNLPQRDGGTHLTGFRSALTRTLVGFLEETGHARKEKVQVTGDDAREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            ++SV + +P+F+ QTK KLVS + +  VE  + +    +L ++P E  ++ E +++ + 
Sbjct: 229 AVVSVRVPDPKFSSQTKDKLVSSEVKPVVEGLVAEKLREFLWEHPAEGRQIAEKMMDAAR 288

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   R+ R+   RK A+    LPGKLADC +      ELF+VEGDSAGGSAKQAR+R +
Sbjct: 289 AREAARRARDLTRRKGALDIAGLPGKLADCQEKDPSLCELFLVEGDSAGGSAKQARDRRH 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDAD 545
           QAVLPL+GKI+NV  A  +++ ++ +I  L+ ALGC          +LRY +++IMTDAD
Sbjct: 349 QAVLPLKGKIINVEKASFDRVLSSDEITALITALGCGIGKDDFNAGNLRYHRIVIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|2196836|gb|AAB80835.1| DNA gyrase beta-subunit [Shewanella algae]
          Length = 419

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 159/430 (36%), Positives = 245/430 (56%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T L   GKFD+++Y++SGGLHGVG+SVVNALS++L +T+ R   ++ Q +  G P 
Sbjct: 1   EVIMTVLRPLGKFDHNSYKVSGGLHGVGVSVVNALSEKLQLTIRRDGKVYEQFYKHGEPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            P+++  +     GT I F P  + F D   F    L K  +  ++L+  V      +++
Sbjct: 61  EPIKEIGEATK-TGTEIRFWPSHETFTD-TEFHYELLAKRIRELSFLNSGVGIRLVDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             +       E F++ GG+K +++    N++ ++ ++F    E++     TVE A+ W +
Sbjct: 119 NKD-------ELFHYEGGIKAFVKYLNRNKTPVNKDVFHFSQERED--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R ALTR +  Y E      K   +   DD      
Sbjct: 170 GFQESIFCFTNNIPQRDGGTHLAGFRAALTRNLNNYMEKEGFNKKGKTNATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +  + YL++NP +A  ++  +I+   
Sbjct: 230 AVVSVKVPDPKFSSQTKDKLVSSEVKGAVEQTMGEKMNDYLLENPADAKMIVGKIIDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKI NV  A  +K+   Q++  L+ ALGC   R +Y  +  RY K+II TDAD
Sbjct: 350 QAILPLKGKIFNVEKARFDKMLFFQEVATLITALGCGIGRDEYDPDKTRYHKIIIRTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHILTLL 419


>gi|148470292|gb|ABQ66093.1| gyrase b [uncultured bacterium]
          Length = 415

 Score =  252 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 162/425 (38%), Positives = 231/425 (54%), Gaps = 13/425 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFDNS Y++SGGLHGVG+SVVNALS  L + + ++  +  Q + +G+P 
Sbjct: 1   EVIMTVLHAGGKFDNSLYKVSGGLHGVGVSVVNALSRRLELEIYQEGRLHRQVYHQGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL         RGT I F PD  I      F    L    +  A+L+  +         
Sbjct: 61  APLSVVG-TTALRGTSIRFWPDLSIMET-DTFLFDTLAHRFRELAFLNPILTIV------ 112

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
              +     +E F+F GG+K+Y +   EN+  I  E+   + E     +  V +      
Sbjct: 113 -LREEESLREETFHFEGGIKSYNEFLNENKKTIH-EVLFFRRELPSGAQFEVAFQYQETT 170

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
           +N  I  + N I T EGGTH  G R ALTR I ++ +  Q  +   +  +D+      ++
Sbjct: 171 DNETILGFANNIFTKEGGTHIKGFRTALTRVINRFIKDKQLNKGEELRGEDIREGLTAVV 230

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV I +P+F GQTK KL S      +E  L +       + P  A K+ +  I+ +  R 
Sbjct: 231 SVRIPDPQFEGQTKAKLGSSWVSGAMETFLAEEMQERFEEFPQIAKKIADKAIQTAMARE 290

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK +E   RK  +    LPGKLADC ++     EL+IVEGDSAGGSAKQ R+R  QA+
Sbjct: 291 AARKAKELAKRKNVLEGSNLPGKLADCQESDPAKCELYIVEGDSAGGSAKQGRDRKFQAI 350

Query: 490 LPLRGKILNVASA-GSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVD 547
           LPL+GKILNV  A G+E+   + ++  L+ A+GC   ++   +  LRY K+IIMTDADVD
Sbjct: 351 LPLKGKILNVEKAGGAERFVTHDEVRALITAVGCGLGNKEYSQKNLRYHKIIIMTDADVD 410

Query: 548 GAHIA 552
           G+HI 
Sbjct: 411 GSHIR 415


>gi|4894896|gb|AAD32647.1|AF136391_1 gyrase B [Shewanella sp. ANA-3]
          Length = 418

 Score =  252 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 156/429 (36%), Positives = 239/429 (55%), Gaps = 16/429 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T L   GKFD+++Y++SGGLHGVG+SVVNALS +L +T+ R+  +  Q ++ G+P 
Sbjct: 1   EVIMTVLQPVGKFDDNSYKVSGGLHGVGVSVVNALSKKLQLTIRREGKVHEQFYTHGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            P++         GT I F P  + F D   F    L    +  ++L+  V      +++
Sbjct: 61  EPIKVIGDATK-TGTEIRFWPSEETFSD-VDFHFEILANRVRELSFLNSGVGIRLVNERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + E F + GG+  ++     N++ ++ ++F    E+      TVE A+ W +
Sbjct: 119 N-------KNEFFKYEGGISAFVDYLNRNKTPVNKDVFHFMQERDD--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R ALTR    Y E      K   +   DD      
Sbjct: 170 GYQESIFCFTNNIPQRDGGTHLAGFRSALTRNFNNYMENEGYNKKGKTNATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +  + YLV+NP +   ++  +++   
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSREVKAAVEQTMGEKLNDYLVENPADGKLIVGKIVDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARKAREMTRRKGALDLCGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  +  RY  +IIMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKTRYHNIIIMTDAD 409

Query: 546 VDGAHIASL 554
           VDG+HI +L
Sbjct: 410 VDGSHIRTL 418


>gi|29652982|gb|AAO87460.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652998|gb|AAO87468.1| DNA gyrase B [Listeria monocytogenes]
          Length = 191

 Score =  252 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 90/192 (46%), Positives = 121/192 (63%), Gaps = 2/192 (1%)

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I  N+
Sbjct: 2   KLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANE 61

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ M  L++  +
Sbjct: 62  EIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGY 121

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPL++I  G +  Y + +   +  L      G  K  I R+KGLGEM   QL +T
Sbjct: 122 IYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYKGLGEMNPEQLWDT 179

Query: 632 AMDANKRTLLRV 643
            M+   RTLL+V
Sbjct: 180 TMNPEHRTLLQV 191


>gi|312271590|gb|ADQ56150.1| DNA gyrase subunit B [Vibrio sp. HB0308-1A6]
 gi|312271600|gb|ADQ56155.1| DNA gyrase subunit B [Vibrio sp. HB0308-2A5]
 gi|312271638|gb|ADQ56174.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271644|gb|ADQ56177.1| DNA gyrase subunit B [Vibrio sp. L8M]
 gi|312271646|gb|ADQ56178.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271656|gb|ADQ56183.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|312271812|gb|ADQ56261.1| DNA gyrase subunit B [Vibrio cholerae]
          Length = 373

 Score =  252 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 130/384 (33%), Positives = 207/384 (53%), Gaps = 15/384 (3%)

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           GY   I V++  +  ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++S
Sbjct: 1   GYCKDIVVTIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVS 59

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+++ +T+ R   I SQ +  G+P +PL        + GT + F P
Sbjct: 60  GGLHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGDT-ERTGTTVRFWP 118

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V    S ++E  +K      + F + GG++ 
Sbjct: 119 SAQTFTN-IEFHYDILAKRLRELSFLNSGVSIKLSDEREEDKK------DHFMYEGGIQA 171

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++     N++ I  ++F    E++     +VE A+ W +     I  + N I   +GGTH
Sbjct: 172 FVTHLNRNKTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTH 229

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  Y +      K   +   DD       ++SV + +P+F+ QTK KLV
Sbjct: 230 LAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 289

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE+A+ +    +L +NP EA  +   +I+        R+ +    RK A+   
Sbjct: 290 SSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLA 349

Query: 448 RLPGKLADCSQNIAHGTELFIVEG 471
            LPGKLADC +     +EL+IVEG
Sbjct: 350 GLPGKLADCQEKDPALSELYIVEG 373


>gi|148616444|gb|ABQ96965.1| GyrB [Nocardiopsis chromatogenes]
          Length = 420

 Score =  252 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 148/426 (34%), Positives = 230/426 (53%), Gaps = 10/426 (2%)

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
           +E+I+T LHAGGKFD  +Y +SGGLHGVG+SVVNALS  L   V R   ++ Q +    P
Sbjct: 1   IEVIMTVLHAGGKFDGKSYAVSGGLHGVGVSVVNALSTRLEAEVRRDGHVWRQTYEMTRP 60

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            + + K E+  +  GT+ITF  DP IF     +    L +  Q  A+L+  +      ++
Sbjct: 61  TADVAKGEETAD-SGTQITFWADPSIFETTT-YSFETLARRMQEMAFLNKGLSITLRDER 118

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
                      + F++   L  +++     +    + +   + + +G    +VE A+ W 
Sbjct: 119 -PEFAPDGTAVQTFHYEDDLVDFVRHINAKKEPSHASVIDFEEDGEGI---SVEIAMQWN 174

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISA 366
           +     + ++ NTI T EGGTHE G R ALT  + +YA   +   ++  ++  DD+    
Sbjct: 175 QSYTSSVHTFANTINTAEGGTHEEGFRTALTSVVNRYAREQRLLLEKDDNLTGDDIREGL 234

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIER 425
             I+SV + +P+F GQTKTKL + +A+  V+    +    +  +NP EA  ++ +     
Sbjct: 235 TAIISVKLADPQFEGQTKTKLGNTEAKSFVQRVTHEHLRDWFERNPGEAKDVVSKANQAA 294

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
                 R+ +    RKT +    LPGKL+DC       +E++IVEGDSAGGSAK  R+  
Sbjct: 295 RARIAARQARDLTRRKTLLESTSLPGKLSDCQSAEPEKSEVYIVEGDSAGGSAKGGRDPL 354

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545
            QA+LP+RGKILNV  A  ++I  N ++  ++ ALG      +  + LRY K+I+MTDAD
Sbjct: 355 YQAILPIRGKILNVEKARIDRILKNNEVQAIITALGTGIHDDFDIDKLRYHKIILMTDAD 414

Query: 546 VDGAHI 551
           VDG+HI
Sbjct: 415 VDGSHI 420


>gi|207108886|ref|ZP_03243048.1| DNA gyrase subunit B [Helicobacter pylori HPKX_438_CA4C1]
          Length = 215

 Score =  252 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 99/212 (46%), Positives = 133/212 (62%), Gaps = 4/212 (1%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY + SI++L+GLE VR RPGMYIG T+   LHH+  EV+DNA+DE +AG+ + I ++L
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVGGLHHMVYEVVDNAVDESMAGFCDTINITL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV+ HP         ++LT LHAGGKFDN TY++SGGLHGVG+SV
Sbjct: 62  TEEGSCIVEDNGRGIPVDIHP-TEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDK 219
           VNALS  L +T+ ++  I+ Q+F +GIP S LE   K +   + GT I F PD  +    
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPTSDLEIIGKTKSAKESGTTIEFFPDESVMEV- 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
             F A  L K  +  AYL+  +K  +  +K  
Sbjct: 180 VEFQAGILQKRFKEMAYLNDGLKISFKEEKTQ 211


>gi|4996818|dbj|BAA78454.1| subunit B protein of DNA gyrase [bacterium rM17]
          Length = 299

 Score =  252 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 103/308 (33%), Positives = 166/308 (53%), Gaps = 14/308 (4%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFP-NKS 128
           D   LHH+  EV+DNA+DE +AG+ + I V++  +  ++V DNGRGIP + H      +S
Sbjct: 1   DGTGLHHMVFEVVDNAIDEALAGHCDDIVVTIHADNSVSVTDNGRGIPTDIHKDDEFGRS 60

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
             EI++T LHAGGKFD+++Y++SGGLHGVG+S VNALS+ L +T+ R       +F +G 
Sbjct: 61  AAEIVMTELHAGGKFDHNSYKVSGGLHGVGVSCVNALSEWLRLTIWRNGKTHEMEFRQGE 120

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
            + PL       +++GT + F  D  IF +   +    L K  +  ++L+  VK     +
Sbjct: 121 RVEPLSVTG-SSDRKGTSVRFLADSTIFEN-IEYQYDVLAKRLRELSFLNNGVKVRLIDE 178

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIA 307
           ++  E       E+F F GG+K ++      ++++   +F+  TE   G     V+ A+ 
Sbjct: 179 RQGKE-------EDFAFLGGVKGFVDYINRAKTVLHPNVFSVSTESNAGGETVGVDVAMQ 231

Query: 308 WCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMI 364
           W +     +  + N I   +GG+H +GLR A+TR I KY    +   K  +    DD+  
Sbjct: 232 WNDSYSETVLCFTNNIPQRDGGSHLTGLRAAMTRVINKYIADNELAKKAKVDTSGDDMRE 291

Query: 365 SAVGILSV 372
               +LSV
Sbjct: 292 GLACVLSV 299


>gi|29652936|gb|AAO87437.1| DNA gyrase B [Listeria monocytogenes]
          Length = 189

 Score =  252 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 89/191 (46%), Positives = 120/191 (62%), Gaps = 2/191 (1%)

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I  N++
Sbjct: 1   LADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEE 60

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ M  L++  ++
Sbjct: 61  IRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGYI 120

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
           ++  PPL++I  G +  Y + +   +  L      G  K  I R+KGLGEM   QL +T 
Sbjct: 121 YIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYKGLGEMNPEQLWDTT 178

Query: 633 MDANKRTLLRV 643
           M+   RTLL+V
Sbjct: 179 MNPEHRTLLQV 189


>gi|89512210|gb|ABD74001.1| DNA topoisomerase IV subunit beta [Mycobacterium avium subsp.
           paratuberculosis]
          Length = 179

 Score =  252 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 91/182 (50%), Positives = 121/182 (66%), Gaps = 6/182 (3%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A   + A D Y AS+I +LEGLE VR RPGMYIG T E+ LHHL  EV+DN++DE +AGY
Sbjct: 2   AAQKKKAQDEYGASAITVLEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNSVDEAMAGY 61

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF--DNSTYEIS 151
           A+ ++V +  +G + V DNGRGIPV  H       T+++++T LHAGGKF  +NS Y +S
Sbjct: 62  ADRVDVRILDDGSVEVADNGRGIPVAIH--ATGAPTVDVVMTQLHAGGKFGGENSGYNVS 119

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS  L V +AR    +SQ +   +P +   K+ +V  + GT I F  
Sbjct: 120 GGLHGVGVSVVNALSTRLEVNIARDGYEWSQYYDHAVPGTL--KQGEVTKRTGTTIRFWA 177

Query: 212 DP 213
           DP
Sbjct: 178 DP 179


>gi|2196804|gb|AAB80819.1| DNA gyrase beta-subunit [Shewanella putrefaciens]
          Length = 419

 Score =  252 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 157/430 (36%), Positives = 242/430 (56%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKF++++Y +SGGLHGVG+SVVNALS +L +T+ R   ++ Q ++ G+P 
Sbjct: 1   EVIMTVLHAGGKFEDNSYNVSGGLHGVGVSVVNALSKKLQMTIRRAGKVYEQFYTHGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+ +        GT I F P    F +   F    L K  +  ++L+  V      +++
Sbjct: 61  APIREIGDATK-TGTEIRFWPSENTFSN-IEFHFEILAKRVRELSFLNSGVGIRLIDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + E F + GG+  ++     N++ I+ ++     E+      TVE A+ W +
Sbjct: 119 N-------KNELFKYEGGISAFVDYLNRNKTPINKDVSHFIQERDD--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                I  + N I   +GGTH  G R ALTR +  Y E      K   S   DD      
Sbjct: 170 GYQENIFCFTNNIPQRDGGTHLVGFRSALTRNLNSYMENEGYNKKGKTSATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +  + Y+++NP +A  ++  +++   
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEKLNDYVLENPADAKLIVGKIVDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +E++IVEGD AGGSAKQ RNR N
Sbjct: 290 AREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDFAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+  +Q++  L+ ALGC   R +Y  +  RY+ +I+MTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLFSQEVATLITALGCGIGRDEYNPDKTRYQNIIMMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHILTLL 419


>gi|165968984|gb|ABY76048.1| topoisomerase IV subunit ParE [Parachlamydia acanthamoebae]
          Length = 459

 Score =  252 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 142/504 (28%), Positives = 234/504 (46%), Gaps = 52/504 (10%)

Query: 109 VVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDE 168
           V D GRGIP+           +   ++ ++ G K+++  ++ S GL+GVG   VNALS  
Sbjct: 1   VRDFGRGIPLGK---------VIDCVSQINTGAKYNDDVFQFSVGLNGVGTKAVNALSSH 51

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
             V   R+       FS+G  +   EK +K     GT + F PD +IF     F+   + 
Sbjct: 52  FLVRSHREGKSMEAVFSQGKLIR--EKSQKTSEPDGTYVEFIPDKEIFKKYR-FEPEYIQ 108

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           K     AYL+  +   ++     +E              GL   L  ++    L     +
Sbjct: 109 KRLWHYAYLNTGLILEYNGQDIYSE-------------NGLLDLLNEEVTEDRLYEPLYY 155

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
            GK          +E+A    +       S+ N   T +GGTH S  R  + +G+ +Y+ 
Sbjct: 156 RGK---------LLEFAFLHTQSYGESYFSFVNGQYTSDGGTHLSAFREGILKGVNEYS- 205

Query: 348 LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               K+  +    DL    VG ++V I++P F  QTK KL + + +  +   ++D   + 
Sbjct: 206 ----KK--NFQGVDLREGIVGTVAVRIKDPVFESQTKNKLGNTELRGPLVQEVKDAVVNM 259

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHG---- 463
           L +NP  A  ++E ++   + R      ++  ++   +      KL DC  +        
Sbjct: 260 LYKNPSTANSIIERIVFNEKLRKELAAVKKEAKEKQKKISFKIPKLRDCKYHAQDKADVG 319

Query: 464 --TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
             T +F+ EGDSA  S   +R+   QAV  LRGK LNV     +++  N+++ +L+ AL 
Sbjct: 320 EKTMIFLTEGDSASASIVASRDPLTQAVFSLRGKPLNVHGMKIDQLYKNEEMFNLMSALN 379

Query: 522 CRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581
                    E+LRY+KVI+ TDADVDG HI +LL+TFF      L+   HLF++  PLF+
Sbjct: 380 IE----DDIENLRYQKVILATDADVDGMHIRNLLITFFLTYFEGLVLNGHLFILETPLFK 435

Query: 582 ITQGTKSVYAHDEEHKQKILEEFK 605
           +    K++Y + EE + K +++ K
Sbjct: 436 VRNREKTLYCYSEEERDKAIKQLK 459


>gi|326379146|gb|ADZ57486.1| DNA topoisomerase IV subunit B [Flavobacterium psychrophilum]
          Length = 437

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 129/474 (27%), Positives = 212/474 (44%), Gaps = 56/474 (11%)

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
            ++KM ++  YL+  +   ++ +K             F+   GLK  L+  +    ++  
Sbjct: 1   YIIKMLKNYCYLNTGLTIIYNGEK-------------FFSNNGLKDLLEENIAEEDMVYP 47

Query: 286 EIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKY 345
            I              +    +  + + E  S+ N   T +GGTH    R ++ + IK++
Sbjct: 48  IIHLLG------DDIEIAITHSKTQYSEEYYSFVNGQNTTQGGTHLGAFRESIVKTIKEF 101

Query: 346 AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA-------QRTVEN 398
                        + D+  S V  + V + EP F  QTKTKL S D        +  V +
Sbjct: 102 YN-------KPFEASDIRKSIVSAIVVRVEEPVFESQTKTKLGSTDMGPDLPSVRTFVND 154

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
            ++   D++L +NP  A  LL  +++   ER      R++ +  A +      KL DC  
Sbjct: 155 FIKTKLDNFLHKNPETADLLLRKILQAERERKELSGIRKLAKDRAKKSNLHNKKLRDCRV 214

Query: 459 NIAH-------GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           ++          + LFI EGDSA GS  ++R+ + QAV  LRGK LN      + +  N+
Sbjct: 215 HLTDAKNARSLESTLFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSYGMSKKIVYENE 274

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +   L  AL          EDLRY  ++I TDADVDG HI  LL+TFF Q   ++I++ H
Sbjct: 275 EFNLLQAALNIE----ESMEDLRYNNIVIATDADVDGMHIRLLLITFFLQFFPEMIKEGH 330

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           L+++  PLFR+    +++Y + E+ K+  +E+     K K EI+RFKGLGE+   + K  
Sbjct: 331 LYILQTPLFRVRNKKETIYCYSEQEKRDAIEKL----KPKPEITRFKGLGEISPDEFKNF 386

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
                   L  V ++K        +  +   MG    +R  FI        ++ 
Sbjct: 387 IG--ETIRLDPVMLDKST----SIEKLLEFYMGKNTPDRQTFIINNLKV--ELD 432


>gi|148470248|gb|ABQ66071.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 168/430 (39%), Positives = 242/430 (56%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y+ISGGL GVG+SVVNALS  L +T+ R       +F  G  +
Sbjct: 1   EVIMTVLHAGGKFDSNSYKISGGLRGVGVSVVNALSTWLKLTIYRDGKRHFMEFREGDAV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL         RGT I F P P  FG    F    L +  +  ++L+  V       + 
Sbjct: 61  APLAVVGDSPK-RGTEIHFLPSPLTFGT-IEFHYDILARRLRELSFLNNGVSILLKDLRH 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       E F F GG++ +++     R+++   +F    EK+G    TVE A+ W E
Sbjct: 119 GQE-------ENFSFNGGVRGFVEYLNRTRTVLHPTVFHSVGEKEGI---TVEVAMQWNE 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH + LR A+TR +  + E  +   K  +    DD+     
Sbjct: 169 SYQENVLCFTNNIPQRDGGTHLTALRAAMTRTLNHFIEENELARKAKVETTGDDMREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE  + D    +L++ P EA  ++  +IE + 
Sbjct: 229 CVLSVKVPDPKFSSQTKEKLVSSEVRPAVEEVVSDQMRSFLLEKPAEARIIVGKIIEAAR 288

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK RE   RK A+  L LPGKLADC +      E+++VEGDSAGGSAKQ R+R  
Sbjct: 289 AREAARKARELTRRKGALDGLGLPGKLADCQEKDPAQCEIYLVEGDSAGGSAKQGRDRRF 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q+I+ L+ ALG          E +RY ++IIMTDAD
Sbjct: 349 QAILPLKGKILNVERARFDKLVSSQEIVTLITALGTGIGKDEYSPEKVRYHRIIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|148971387|gb|ABR20231.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 168/430 (39%), Positives = 242/430 (56%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y+ISGGLHGVG+SVVNALS  L +T+ R       +F  G  +
Sbjct: 1   EVIMTVLHAGGKFDSNSYKISGGLHGVGVSVVNALSTRLKLTIYRDGKRHFMEFREGDAV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL         RGT I F P P  FG    F      +  +  ++L+  V       + 
Sbjct: 61  APLAVVGDSPK-RGTEIHFLPSPLTFGT-IEFHYDIQARRLRELSFLNNGVSIFLKDLRH 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       E F F GG++ +++     R+++   +F    EK+G    TVE A+ W E
Sbjct: 119 GQE-------ENFSFSGGVRGFVEYLNRTRTVLHPTVFHSVGEKEGI---TVEVAMQWNE 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH + LR A+TR +  + E  +   K  +    DD+     
Sbjct: 169 SYQENVLCFTNNIPQRDGGTHLTALRAAMTRTLNHFIEENELARKAKVETTGDDMREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE  + D    +L++ P EA  ++  +IE + 
Sbjct: 229 CVLSVKVPDPKFSSQTKEKLVSSEVRPAVEEVVSDQMRSFLLEKPAEARIIVGKIIEAAR 288

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK RE   RK A+  L LPGKLADC +      E+++VEGDSAGGSAKQ R+R  
Sbjct: 289 AREAARKARELTRRKGALDGLGLPGKLADCQEKDPAQCEIYLVEGDSAGGSAKQGRDRRF 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q+I+ L+ ALG          E +RY ++IIMTDAD
Sbjct: 349 QAILPLKGKILNVERARFDKLVSSQEIVTLITALGTGIGKDEYSPEKVRYHRIIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|301477616|dbj|BAJ12093.1| DNA gyrase subunit beta [Pandoraea sp. TA04]
          Length = 424

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 158/435 (36%), Positives = 242/435 (55%), Gaps = 27/435 (6%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK-----------V 199
           SGGLHGVG+S VNALS  L +TV R       +F +G+P +   +               
Sbjct: 1   SGGLHGVGVSCVNALSTYLKLTVRRDGKKHFMEFHQGVPQNRELEMVDGVETSPLKLLGD 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            +KRGT + F  D  IFG    +    L K  +  ++L+  V+   +  +   E      
Sbjct: 61  TDKRGTEVHFLADETIFGKV-EYHYDILAKRMRELSFLNNGVRIRLTDQRTGKEDD---- 115

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              F F GG+K +++   ++++++   +F    E+ G     VE A+ W +     +  +
Sbjct: 116 ---FAFGGGVKGFVEYINKSKTVLHPTVFHVMGERDGI---GVEVAMQWNDSYNETVLCF 169

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GG+H +GLR A+TR I KY   ++   K  +    DD+      +LSV + E
Sbjct: 170 TNNIPQRDGGSHLTGLRAAMTRVINKYIAESEIAKKAKVETTGDDMREGLTCVLSVKVPE 229

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F+ QTK KLVS + +  VE  +    + +L + P +A  +   ++E +  R   RK R
Sbjct: 230 PKFSSQTKDKLVSSEVRAPVEEYVAKALEDFLQETPNDAKIICTKIVEAARARDAARKAR 289

Query: 437 EVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E+ R+   +  + LPGKLADC +      E+++VEGDSAGGSAKQ R+R  QA+LPLRGK
Sbjct: 290 EMTRRKGVLDGVGLPGKLADCQEKDPALCEIYVVEGDSAGGSAKQGRDRKFQAILPLRGK 349

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           +LNV  A  +K+ +++QI+ L+ ALGC   +  Y  + LRY ++IIMTDADVDGAHI +L
Sbjct: 350 VLNVEKARFDKLISSEQIVTLITALGCGIGKDDYNIDKLRYHRIIIMTDADVDGAHIRTL 409

Query: 555 LLTFFYQEMYDLIEQ 569
           LLTF Y+++ +LIE+
Sbjct: 410 LLTFLYRQVPELIER 424


>gi|29652723|gb|AAO87331.1| DNA gyrase B [Listeria monocytogenes]
          Length = 196

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 92/198 (46%), Positives = 123/198 (62%), Gaps = 2/198 (1%)

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A 
Sbjct: 1   LEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKAR 60

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ M
Sbjct: 61  LDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYM 120

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
             L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+KGLGEM
Sbjct: 121 RPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYKGLGEM 178

Query: 624 LASQLKETAMDANKRTLL 641
              QL +T M+   RTLL
Sbjct: 179 NPEQLWDTTMNPEHRTLL 196


>gi|148470270|gb|ABQ66082.1| gyrase b [uncultured bacterium]
          Length = 426

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 161/427 (37%), Positives = 245/427 (57%), Gaps = 15/427 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD S+Y++SGGLHGVG +VVNALS+ + V + R  T +  +F  G  +
Sbjct: 1   EVIMTVLHAGGKFDQSSYKVSGGLHGVGAAVVNALSEWMDVRIWRDGTEYFIRFENGNAV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL          GT + F+P P  F     FD     +  +  A+L+  +K     ++ 
Sbjct: 61  APLHVVAPSEQPTGTEVVFKPSPATFTR-TEFDFTVFERRLRELAFLNSGLKISLRDER- 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
               +  P +  F + GGL  ++     ++S + S   T   E KG+    +E+A++W +
Sbjct: 119 ----HATPIQSRFCYKGGLVEFVAWLDRSKSALISPPITALHEDKGS-GIKIEFALSWND 173

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGI 369
                +  + N I+  +GGTH +G R ALTR I KYA+    K  +S++ +D+      +
Sbjct: 174 SFHETMLCFTNNIIQRDGGTHLAGFRSALTRVISKYADAIGKKDNVSLVGEDMREGLTAV 233

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           LSV + +P+F+ QTK KLVS + Q  V+ A+ D  DH+   +P EA  L++ VI+ +  R
Sbjct: 234 LSVKVPDPKFSSQTKDKLVSSEVQPIVQAAVTDVLDHWFETHPKEAKALVQKVIDAATAR 293

Query: 430 LRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
              RK R++ R+   +    LPGKLADC +     +E+FIVEGDSAGGSAKQ R+R  QA
Sbjct: 294 EAARKARDLTRRKGVLDVSSLPGKLADCQERDPSKSEIFIVEGDSAGGSAKQGRDRRTQA 353

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE------DLRYEKVIIMT 542
           +LPL+GKILNV  +  +++ ++ +I  L+ ALG        E+       +RY +V+IMT
Sbjct: 354 ILPLKGKILNVERSRFDRMLSSAEIGTLITALGTGIGPTDPEQGGFDIGKIRYHRVVIMT 413

Query: 543 DADVDGA 549
           DADVDG+
Sbjct: 414 DADVDGS 420


>gi|148470172|gb|ABQ66034.1| gyrase b [uncultured bacterium]
          Length = 420

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 155/427 (36%), Positives = 238/427 (55%), Gaps = 15/427 (3%)

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           +T LHAGGKFD ++Y++SGGLHGVGISVVNALS +L +++ R+   + Q+++ G P+ P+
Sbjct: 4   MTVLHAGGKFDENSYKVSGGLHGVGISVVNALSKKLTLSIKREGQRWEQEYATGDPVEPI 63

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
                 R   GT ITF PD ++F     F   RL    +  A+L+  +K     ++E  +
Sbjct: 64  APTGNCRG-TGTTITFLPDSEVFES-IEFSFNRLQNRFKELAFLNDNLKITLKDEREGKK 121

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
           +  I     F++ GG+  ++    + R  I   I   + E+ G     ++ AI W +   
Sbjct: 122 REAI-----FHYEGGVGAFVADINKGREAIHPTIIRVRGERDGI---VIDAAIQWNDGYA 173

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
             +  + N I   +GGTH +G R A+TR +  Y +      K  I+  S D+      IL
Sbjct: 174 ESVYPFTNNIPQADGGTHLTGFRSAMTRALSAYLDREGVAAKNKITADSSDMREGLAAIL 233

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEER 429
           SV + +P+F+ QTK KLVS + +  VE  + +    +L ++P EA  +   ++       
Sbjct: 234 SVKVPDPKFSSQTKDKLVSSEVRPVVEGIIAEALTTFLDEHPKEAQAIAAKIVEAARARE 293

Query: 430 LRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             R+ +    RK+A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R  QA+
Sbjct: 294 AARKARETTRRKSAMDIANLPGKLADCQEKDPSLCEIYLVEGDSAGGSAKQGRDRKFQAI 353

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDG 548
           LPL+GKILNV  A  ++I  +++I  ++ ALG            LRY ++I+MTDADVDG
Sbjct: 354 LPLKGKILNVERARFDRILESEEIGTMITALGTGIGPDEFNAAKLRYHRIILMTDADVDG 413

Query: 549 AHIASLL 555
           +HI +LL
Sbjct: 414 SHIRTLL 420


>gi|61676016|gb|AAX51673.1| gyrase subunit B [Simkania negevensis]
          Length = 284

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 104/288 (36%), Positives = 153/288 (53%), Gaps = 14/288 (4%)

Query: 62  PGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENH 121
           PGMYIG T    LH L  EV+DN++DE +AG+ + I V ++ +G +T+ DNGRGIP++ H
Sbjct: 1   PGMYIGDTSTSGLHQLVYEVVDNSIDEAMAGHCSEIYVIINADGSITLEDNGRGIPIQKH 60

Query: 122 PKFPNK-----STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQ 176
            K   K     S LE+++TTLHAGGKFD  TY++SGGLHGV +S V ALS ++ V V + 
Sbjct: 61  EKESQKQGREVSALEVVMTTLHAGGKFDKETYKVSGGLHGVSVSCVCALSSKMIVNVYKD 120

Query: 177 NTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAY 236
             ++   FS+G  +  L         +GT ITF PD +       FD   L K  +  A+
Sbjct: 121 GRVWEMHFSQGKVIKSLADMGATSK-KGTHITFWPD-ETVMTVTEFDYDILAKRLRELAF 178

Query: 237 LSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG 296
           L+  +   +  ++             F + GGLK+++    EN++ +  E       ++G
Sbjct: 179 LNRGISIFFQDERRDDNDD-----VNFRYDGGLKSFVSYLNENKNAVFPEPIYFYGTREG 233

Query: 297 THR-GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
                 +E A+ W +     I SY N I T  GGTH +G   AL R +
Sbjct: 234 DDGPIDIEVAMQWNDGYNETIFSYVNNISTAHGGTHLTGFSTALPRVL 281


>gi|19909707|dbj|BAB87049.1| DNA gyrase subunit B [Pseudomonas sp. Tol5]
          Length = 289

 Score =  251 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 99/288 (34%), Positives = 153/288 (53%), Gaps = 14/288 (4%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
           D   LHH+  EV+DN++DE +AG+ + I + +  +  +TV DNGRGIPV+ H K    S 
Sbjct: 1   DGSGLHHMVFEVVDNSIDEALAGHCDDISIIIHPDESITVKDNGRGIPVDVH-KEEGVSA 59

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P
Sbjct: 60  AEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVP 119

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
             P++         GT+I F+   + F +   F    L K  +  ++L+  V      ++
Sbjct: 120 QEPMKIVGD-SETTGTQIHFKASSETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDER 177

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
              E       E F + GGL+ +++    N++ ++         + G     VE A+ W 
Sbjct: 178 SGKE-------ELFKYEGGLRAFVEYLNTNKTPVNQVFHFNIQREDGI---GVEIALQWN 227

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
           +     +  + N I   +GGTH  G R ALTR +  Y E     +   
Sbjct: 228 DSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNTYIEAEGLAKKHK 275


>gi|148470268|gb|ABQ66081.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  251 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 159/429 (37%), Positives = 248/429 (57%), Gaps = 17/429 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD++TY++SGGLHGVG+SVVNALS+ L + + R   ++ Q++  G PL
Sbjct: 1   EVIMTVLHAGGKFDDNTYKVSGGLHGVGVSVVNALSERLFLRIRRSGALYEQEYRMGEPL 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            P+ K  +     GT I F+P  ++F +   FD   L    +  ++L+  VK   + ++ 
Sbjct: 61  YPIRKIGEATG-TGTEIRFQPSTQVFTE-TQFDYEVLANRIREISFLNSGVKIYLADER- 117

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                    +E FY  GG++ +++    NR+ + S +     E+ G     VE A+ W +
Sbjct: 118 ------NERQELFYVEGGIRAFVEYLNRNRTALHSSVCHFVGEEAGI---GVEVALQWTK 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                +  + N +   +GGTH +G R ALTR +  + E T    K  + +  DD      
Sbjct: 169 SYQETVFCFTNNLPQRDGGTHLTGFRSALTRTLVGFLEETGHARKEKVQVTGDDAREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            ++SV + +P+F+ QTK KLVS + +  VE  + +    +L ++P E  ++ E +++ + 
Sbjct: 229 AVVSVRVPDPKFSSQTKDKLVSSEVKPVVEGLVAEKLREFLWEHPAEGRQIAEKMMDAAR 288

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   R+ R+   RK A+    LPGKLADC +      ELF+VEGDSAGGSAKQAR+R +
Sbjct: 289 AREAARRARDLTRRKGALDIAGLPGKLADCQEKDPSLCELFLVEGDSAGGSAKQARDRRH 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDAD 545
           QAVLPL+GK +NV  A  +++ ++ +I  L+ ALGC          +LRY +++IMTDAD
Sbjct: 349 QAVLPLKGKTINVEKASFDRVLSSDEITALITALGCGIGKDDFNAGNLRYHRIVIMTDAD 408

Query: 546 VDGAHIASL 554
           VDG+HI +L
Sbjct: 409 VDGSHIRTL 417


>gi|119369934|gb|ABL67981.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  251 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 154/428 (35%), Positives = 227/428 (53%), Gaps = 13/428 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGG+FDNS Y++SGGLHGVG+SVVNALS+ L + + +   +  Q + +G P 
Sbjct: 1   EVIMTVLHAGGEFDNSLYKVSGGLHGVGVSVVNALSETLQLEIHQNGLVHRQTYHKGTPE 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    + ++ RGT I F PD  I      F    L    +  A+L+  +      ++ 
Sbjct: 61  APLAVVGETQS-RGTTIRFWPDMTIMET-DQFSFETLAHRFRELAFLNPVMTIHLKEEET 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
           + E     E+                 E +    +     + + +   +  V +      
Sbjct: 119 LREGSVPLER--------GHPVFCRISERKQENPARFLFFRKQLEDGAQFEVAFQYQEST 170

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
           EN  +  + N I T EGGTH  G R ALT+ I K+    Q  +   +  +D+      ++
Sbjct: 171 ENETVLGFANNIHTREGGTHVRGFRTALTKTINKFIREKQLNKGEEVRGEDVREGLTAVI 230

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV I  P+F GQTK KL S      +E+ L +       ++P+ A K+ E  +  ++ R 
Sbjct: 231 SVRISNPQFEGQTKGKLGSSWVAGAMESFLSEALQDKFDEDPLVAKKIAEKAVLTAQARE 290

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK ++   RK  +    LPGKLADC ++    +EL+IVEGDSAGGSAKQ R+R  QA+
Sbjct: 291 AARKAKDLAKRKNVLEGSNLPGKLADCQESDPAKSELYIVEGDSAGGSAKQGRDRRFQAI 350

Query: 490 LPLRGKILNVASAG-SEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVD 547
           LPL+GKILNV  +   EK   N ++  L+ A+GC    +   E+ LRY K+IIMTDADVD
Sbjct: 351 LPLKGKILNVEKSRGIEKFITNDEVRALITAVGCGLGDEEFSEKKLRYHKIIIMTDADVD 410

Query: 548 GAHIASLL 555
           G+HI +LL
Sbjct: 411 GSHIRTLL 418


>gi|27530058|dbj|BAC53884.1| DNA gyrase B subunit [Legionella jamestowniensis]
          Length = 285

 Score =  251 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 105/297 (35%), Positives = 165/297 (55%), Gaps = 16/297 (5%)

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133
           LHH+  EV+DN++DE +AGY   I+V++ G+  +TV D+GRGIPV+ H K   +S  E+I
Sbjct: 1   LHHMVFEVVDNSIDEALAGYCTEIQVTIHGDESITVKDDGRGIPVDIH-KEEGRSAAEVI 59

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           +T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+ELH+ + R   ++ Q +  G+P +PL
Sbjct: 60  MTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLLIRRNGKVYEQHYRNGVPDAPL 119

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
                  +  GT++ F+P    F +   F    L K  +  ++L+  V      ++    
Sbjct: 120 AVTGDATS-TGTQVWFKPSANTFTN-IEFHYDILAKRLRELSFLNSGVCIHLYDER---- 173

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
                +++ F + GG++ +++    N++ I   +FT   EK+     +VE A+ W +   
Sbjct: 174 ---TQKRDTFRYEGGIQAFVEHLNRNKTPIMPLVFTLTGEKENI---SVELAMQWNDSFQ 227

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
             I  + N I   +GGTH +G R ALTR +  Y E      K  I    DD      
Sbjct: 228 ETIFCFTNNIPQRDGGTHLAGFRAALTRTLNTYIENEGFAKKAKIVTTGDDAREGLT 284


>gi|295979571|dbj|BAJ07458.1| DNA gyrase subunit B [Rhodobacter sp. MBIC 590]
          Length = 312

 Score =  251 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 103/321 (32%), Positives = 159/321 (49%), Gaps = 18/321 (5%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DN +DE +AG+A  + V +  +  ++V DNGRGIPV+ H     
Sbjct: 1   DTDDGSGLHHMVYEVVDNGIDEALAGHATAVTVKIHADSSVSVRDNGRGIPVDMHA-SEG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALSD L + + R       +F  
Sbjct: 60  VSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLELRIWRNGKEHFARFEN 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRP-----DPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241
           G  +  L        ++GT + F        P        +    L    +  A+L+  V
Sbjct: 120 GETVEHLRVVRDAPGEKGTEVRFLAAAKTNRPDGTFSNLDYSFKTLENRLRELAFLNSGV 179

Query: 242 KTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
           +     ++        P   E ++ GG++ +++    ++S +  E      E+ G     
Sbjct: 180 RILLEDER-----PAEPLHSELFYEGGVREFVRYLDRSKSPVMPEPIFITGERGGI---G 231

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--II 358
           VE A+ W +     +  + N I   +GGTH +G R ALTR I KYA+ +   R       
Sbjct: 232 VEIAMWWNDSYHETVLPFTNNIPQRDGGTHLAGFRGALTRTITKYAQDSGIARREKVDFT 291

Query: 359 SDDLMISAVGILSVFIREPEF 379
            DD       +LSV + +P+F
Sbjct: 292 GDDAREGLTCVLSVKVPDPKF 312


>gi|328349753|emb|CBY89184.1| GyrB protein [Flavobacterium sp. R-38392]
          Length = 426

 Score =  251 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 155/432 (35%), Positives = 239/432 (55%), Gaps = 15/432 (3%)

Query: 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN 177
           V+ H K    S LE+++T + AGGKFD  +Y++SGGLHGVG+S VNALSD L  TV R+ 
Sbjct: 1   VDIHKK-EGVSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSCVNALSDHLRATVYREG 59

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            ++ Q++ +G  + P+++  +  +KRGT +TF PD  IF     +    +    +  ++L
Sbjct: 60  KVYEQEYEKGKAMYPVKQIGET-DKRGTMVTFHPDKSIFTQTIEYSYDTIAGRMRELSFL 118

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +    +  +++ +K      E F+   GLK +++   + R  I S + + + EK   
Sbjct: 119 NKGITITLTDRRDVNDKG-EFASEVFHSTEGLKEFVRFLDKGREAIISHVISMEHEK--- 174

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRA 354
               VE A+ +       I SY N I T EGGTH  G R+ LTR +KKYA+ +    K  
Sbjct: 175 GEVPVEVALVYNTSYSENIFSYVNNINTHEGGTHLQGFRMGLTRTLKKYADSSGLLDKLK 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             I  DD       I+SV ++EP+F GQTKTKL + +    V  A+ +  ++YL +NP +
Sbjct: 235 FEITGDDFREGLTAIISVKVQEPQFEGQTKTKLGNREVVSPVSQAVAEMLENYLEENPND 294

Query: 415 ATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA-DCSQNIAHGTELFIVEGDS 473
           A  +++ VI  ++ R   +K RE+ ++  +           DCS+      E+++VEGDS
Sbjct: 295 ARIIVQKVILAAQARHAAKKAREMVQRKTVLGGGGLPGKLSDCSEQDPAKCEVYLVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE--- 530
           AGG+AKQ R+R  QA+LPLRGKILNV  A   K+  N++I ++  ALG    ++      
Sbjct: 355 AGGTAKQGRDRMFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTIGTEEDSKAL 414

Query: 531 --EDLRYEKVII 540
             E LRY KVII
Sbjct: 415 NLEKLRYHKVII 426


>gi|307939302|gb|ADN95842.1| DNA gyrase B [Hymenobacter antarcticus]
          Length = 440

 Score =  251 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 172/446 (38%), Positives = 253/446 (56%), Gaps = 27/446 (6%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E I+T L AGGKFD  +Y++SGGLHGVG+S VNALS +L VTV R    + Q++  GIP 
Sbjct: 1   EXIMTVLXAGGKFDKGSYKVSGGLHGVGVSCVNALSTDLKVTVRRNGHKYEQEYKIGIPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
             +++   +  + GT + F PD  IF +   +    +    +  +YL+  ++   +  +E
Sbjct: 61  YDVKEVG-LSEEHGTEVQFLPDATIFTE-TEYRYDTVAGRLRDLSYLNKGIRITLTDRRE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQT-KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
             E  G+   EEFY  GGL+ ++Q    E R  + SE    ++EK GT    VE A+ + 
Sbjct: 119 KLE-GGVFRGEEFYSTGGLRDFVQYLDGEQRPSLLSEPIYVESEKGGTP---VEVALQYN 174

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISA 366
                 + SY N I T EGGTH +G R A+TR +K Y +  +   K  + I  DD     
Sbjct: 175 TSYQENVYSYVNNINTIEGGTHVAGFRSAVTRVLKTYGDKNKLFEKAKVEITGDDFREGL 234

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             ++SV ++EP+F GQTKTKL + +    V + + +    YL +NP +A +++E VI  +
Sbjct: 235 TAVISVKVQEPQFEGQTKTKLGNSEVSGAVNSVVGEILTQYLDENPNQANRIMEKVILAA 294

Query: 427 EERLRRRKQREVNRKTAIRKLRL-PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
           + R+  RK +++ ++  +      PGKLADCS++     EL++VEGDSAGG+AKQ RNR+
Sbjct: 295 KARIAARKAKDMVQRKGVLSSNSLPGKLADCSESDPEICELYLVEGDSAGGTAKQGRNRA 354

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY----------------R 529
            QA+LPLRGKILNV  A   +I  N++I +++ ALG     +                  
Sbjct: 355 FQAILPLRGKILNVEKAQEHRILENEEIKNMITALGVSFNERKSLAFTTDDDGTESGPLN 414

Query: 530 EEDLRYEKVIIMTDADVDGAHIASLL 555
              LRY KVIIMTDADVDG+HI +LL
Sbjct: 415 FSKLRYHKVIIMTDADVDGSHIRTLL 440


>gi|225550647|ref|ZP_03771596.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
 gi|225379801|gb|EEH02163.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
          Length = 245

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 104/254 (40%), Positives = 141/254 (55%), Gaps = 11/254 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ YD S+I+ILEGLE VR RPGMYIG T    LHHL  E++DN++DEV+   A  I V 
Sbjct: 2   ANKYDGSAIKILEGLEAVRKRPGMYIGSTSSAGLHHLVWEIVDNSIDEVMNANAKNISVV 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  ++++D+GRGIPV+ +P+    ST+E +LT LHAGGKFD S Y+ +GGLHGVG S
Sbjct: 62  LHEDNSISILDDGRGIPVDINPQ-TKISTVETVLTVLHAGGKFDESAYKTAGGLHGVGSS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFS-RGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           VVNALS  L   V R   I+  KFS  G    PL+     +   GT I F PDP IF + 
Sbjct: 121 VVNALSAWLICEVYRDQKIYQAKFSNWGHIDQPLKVIGTTKK-TGTLIHFLPDPLIFKNL 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+   + +      +L   +K  +       E     +K EF    GL  +++   E 
Sbjct: 180 F-FNPNTIKERLHESTFLIKDLKISF-------EDKINNKKYEFINDQGLIDFIKFINET 231

Query: 280 RSLISSEIFTGKTE 293
           +   S  IF  K  
Sbjct: 232 KKTFSDVIFFKKYH 245


>gi|121730249|ref|ZP_01682630.1| na(+)-translocating NADH-quinone reductase subunit a
           (na(+)-translocating nqr subunit a) (na(+)-nqr subunit
           a) [Vibrio cholerae V52]
 gi|121627999|gb|EAX60554.1| na(+)-translocating NADH-quinone reductase subunit a
           (na(+)-translocating nqr subunit a) (na(+)-nqr subunit
           a) [Vibrio cholerae V52]
          Length = 366

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 131/379 (34%), Positives = 195/379 (51%), Gaps = 15/379 (3%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123
           MY   TD    +HL  EVIDN++DE +AGYA+ I+V L  +  L V+D+GRG+PV+ HP+
Sbjct: 1   MY---TDTTRPNHLGQEVIDNSVDEALAGYASKIQVILHADQSLEVIDDGRGMPVDIHPE 57

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
               S +E+IL  LHAGGKF N  Y+ SGGLHGVGISVVNALS  + V V R   ++   
Sbjct: 58  -EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVAVRRDGQVYEIA 116

Query: 184 FSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
           F  G  ++ L       R   GT + F PD K F     F  +RL+   ++KA L   ++
Sbjct: 117 FEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSPN-FSVSRLINNLRAKAVLCPGLE 175

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
             ++      E         + +  GLK YL   ++  +L+  E FTG+   + T   T 
Sbjct: 176 IIFTDKVNNNE-------YRWLYEDGLKDYLAEGVKGYTLLPEEPFTGEFTAQ-TEAATW 227

Query: 303 EWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDD 361
                         SY N I T +GGTH +GLR  L   ++++ E      R + +  +D
Sbjct: 228 AVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNLLPRGVKLTGED 287

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
           +      +LS+ +++P+FAGQTK +L S  +   V   ++D F  +L + P  A +L E 
Sbjct: 288 VFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAFSLWLNEKPQLAEQLAEV 347

Query: 422 VIERSEERLRRRKQREVNR 440
            I  +  R+R  K+    +
Sbjct: 348 CIANAHSRMRASKKVVRKK 366


>gi|148616458|gb|ABQ96972.1| GyrB [Nocardiopsis kunsanensis]
          Length = 423

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 148/430 (34%), Positives = 230/430 (53%), Gaps = 11/430 (2%)

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
           +E+I+T LHAGGKFD+ +Y +SGGLHGVG+SVVNALS  L V + R   ++ Q++    P
Sbjct: 1   IEVIMTVLHAGGKFDDKSYAVSGGLHGVGVSVVNALSTALDVEIRRDGYVWRQRYDMTRP 60

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
                 + +  ++ GT+ITF  DP IF     F    L +  Q  A+L+  +      ++
Sbjct: 61  GEL--VRGEEVSETGTQITFWADPGIFETTT-FSYETLSRRMQEMAFLNKGLSITIRDER 117

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS-SEIFTGKTEKKGTHRGTVEWAIAW 308
                   P    +++  GL  Y+      +     S I   +  +       ++W  ++
Sbjct: 118 -PDFIDDGPVVNTYHYVNGLSDYVNHINAKKDPAHASIISFEEEGEGIAAEIAMQWNQSY 176

Query: 309 CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISA 366
                 + ++ NT+ T EGGTHE G R ALT  I +YA   +   ++  ++  DD+    
Sbjct: 177 T---SSVHTFANTVNTAEGGTHEEGFRTALTALINRYARDQKLLREKEDNLTGDDIREGL 233

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIER 425
             I+SV + +P+F GQTKTKL + +A+  V+    +    +L +NP EA  ++ +     
Sbjct: 234 TAIISVKLTDPQFEGQTKTKLGNTEAKSFVQKVTNEHLRDWLERNPGEAKDIVSKASQAA 293

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
                 R+ +    RKT +    LPGKL+DC        E++IVEGDSAGGSAK  R+  
Sbjct: 294 RARVAARQARDLTRRKTLLESTSLPGKLSDCQSTNPEECEVYIVEGDSAGGSAKGGRDPH 353

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545
           +QA+LP+RGKILNV  +  ++I  N ++  ++ ALG      +    LRY K+++MTDAD
Sbjct: 354 HQAILPIRGKILNVEKSRIDRILKNAEVQAIITALGTGIHEDFDASKLRYHKIVLMTDAD 413

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 414 VDGSHIRTLL 423


>gi|269854593|gb|ACZ51343.1| DNA gyrase subunit B [Paenibacillus sp. YC20]
          Length = 406

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 163/417 (39%), Positives = 234/417 (56%), Gaps = 17/417 (4%)

Query: 138 HAGGKFDNST--YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK 195
           HAGGKF      Y++SGGLHGVGISVVNALS +L V V R+  +  Q+F+ G+P   L+ 
Sbjct: 1   HAGGKFGGDESGYKVSGGLHGVGISVVNALSKKLVVQVKREGKVHQQEFNCGVPQYDLKV 60

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
             +     GT++TF PD +IF +   +D   L    +  A+L+  ++   + ++      
Sbjct: 61  IGESEE-TGTQVTFWPDEEIFKETTEYDFDTLQSRIRELAFLNKGIEIVLTDERSDVSTS 119

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PE 314
                  F + GG+ ++++     R  + +     + EK      TVE A+ + +     
Sbjct: 120 -------FIYEGGIVSFVEHLNRTREALHTPPIFVEGEKDNI---TVEVALQYNDTYAEN 169

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSV 372
           I S+ N I T EGGTHESG + ALTR + +YA    + +    ++  DD+      I+SV
Sbjct: 170 IYSFANNINTHEGGTHESGFKSALTRILNEYARKFNSIKDSEANLSGDDVREGLTAIISV 229

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLR 431
            I EP+F GQTKTKL + + +  VE+   +  +  LV+NP  A K++E  V  +      
Sbjct: 230 KIPEPQFEGQTKTKLGNSEVRGIVESLFSEKLEESLVENPSIAKKIIEKGVQAQRAREAA 289

Query: 432 RRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           R+ +    RK+A+    LPGKLADCS   A  +E++IVEGDSAGGSAKQ R+R  QA+LP
Sbjct: 290 RKARELTRRKSALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILP 349

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           LRGKILNV  A  +KI +N +I  ++ ALG      +     RY KVIIMTDADVDG
Sbjct: 350 LRGKILNVEKARLDKILSNAEIRAIITALGTGIGDDFDITKARYHKVIIMTDADVDG 406


>gi|269854595|gb|ACZ51344.1| DNA gyrase subunit B [Paenibacillus sp. YC39]
          Length = 406

 Score =  250 bits (639), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 164/417 (39%), Positives = 234/417 (56%), Gaps = 17/417 (4%)

Query: 138 HAGGKFDNST--YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK 195
           HAGGKF      Y++SGGLHGVGISVVNALS +L V V R+  I  Q+F+ G+P   L+ 
Sbjct: 1   HAGGKFGGDESGYKVSGGLHGVGISVVNALSKKLVVQVKREGKIHQQEFNCGVPQYELKI 60

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
                   GT++TF PD +IF +   +D   L    +  A+L+  ++   + ++      
Sbjct: 61  IGDSEE-TGTQVTFWPDEEIFKETTEYDFDTLQSRIRELAFLNKGIEIVLTDERSDVSTS 119

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PE 314
                  F + GG+ + ++   +NR  + S     + EK      TVE A+ + +     
Sbjct: 120 -------FIYEGGIVSLVEHLNQNREPLHSPPIFVEGEKDNI---TVEVALQYNDTYAEN 169

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSV 372
           I S+ N I T EGGTHESG + ALTR + +YA    + +    ++  DD+      I+SV
Sbjct: 170 IYSFANNINTHEGGTHESGFKSALTRILNEYARKFNSIKDSEANLPGDDVREGLTAIISV 229

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLR 431
            I EP+F GQTKTKL + + +  VE+   +  + +LV+NP  A +++E  V  +      
Sbjct: 230 KIPEPQFEGQTKTKLGNSEVRGIVESLFSEKLEEFLVENPSIAKRIIEKGVQAQRAREAA 289

Query: 432 RRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           R+ +    RK+A+    LPGKLADCS   A  +E++IVEGDSAGGSAKQ R+   QA+LP
Sbjct: 290 RKARELTRRKSALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDHHFQAILP 349

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           LRGKILNV  A  +KI +N +I  ++ ALG      +     RY KVIIMTDADVDG
Sbjct: 350 LRGKILNVEKARLDKILSNVEIRAIITALGTGIGDDFDITKARYHKVIIMTDADVDG 406


>gi|84310488|gb|ABC55392.1| DNA gyrase subunit B [Bacillus sonorensis]
          Length = 409

 Score =  250 bits (639), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 163/418 (38%), Positives = 234/418 (55%), Gaps = 13/418 (3%)

Query: 136 TLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK 195
            LHAGGKFD S Y++SGGLHGVG SVVNALS EL VTV R   +  Q++ RG+P + L+ 
Sbjct: 1   VLHAGGKFDGSGYKVSGGLHGVGASVVNALSTELDVTVYRDGKVHYQEYERGVPKADLKV 60

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
                        F+PDP+IF +   +D   L    +  A+L+  VK      +E  E+ 
Sbjct: 61  IGDTDVTGT-TTHFKPDPEIFTETTEYDYDTLATRVRELAFLTKGVKITIEDKREGKERK 119

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PE 314
                  + + GG+K+Y++    +R +I  E    +  K G    TVE A+ + +     
Sbjct: 120 NE-----YCYEGGIKSYVEHLNRSREVIHEEPVYIEGSKDGI---TVEVALQYNDSYTSN 171

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSV 372
           I S+ N I T EGGTHE+G +  LTR I  YA       +   ++  +D+      I+S+
Sbjct: 172 IYSFANNIHTYEGGTHEAGFKTGLTRVINDYARRNGVFKENDPNLSGEDVREGLTAIISI 231

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLR 431
              +P+F GQTKTKL + +A+   +    +  + +L++NP  A K++E  V+        
Sbjct: 232 KHPDPQFEGQTKTKLGNSEARAITDALFSEALEKFLLENPDSAKKIVEKGVMAARARMAA 291

Query: 432 RRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           ++ +    RK+A+    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP
Sbjct: 292 KKARELTRRKSALEVSNLPGKLADCSSKDPTISELYIVEGDSAGGSAKQGRDRHFQAILP 351

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549
           LRGKILNV  A  +KI +N ++  ++ ALG      +  E  RY KV+IMTDADVDG+
Sbjct: 352 LRGKILNVEKARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVVIMTDADVDGS 409


>gi|282599187|ref|YP_003358499.1| topoisomerase II large subunit [Shigella phage phiSboM-AG3]
 gi|226973493|gb|ACO94246.1| topoisomerase II large subunit [Shigella phage phiSboM-AG3]
          Length = 637

 Score =  250 bits (639), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 133/663 (20%), Positives = 229/663 (34%), Gaps = 80/663 (12%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTDE------------------------KALHHLFSEV 81
               + L  +E + +RP  ++G                             AL   F E+
Sbjct: 8   ERKYKKLTHVEHILLRPERHLGSIRSSVGTVWVYDPTKDQVIFRDNFEYSPALIKQFDEI 67

Query: 82  IDNAMDEVIAGYAN---LIEVSLDG-NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137
           I N +D            I V++   NG + V DNG GIPV  H    N+   E++  +L
Sbjct: 68  ITNCVDHSKTPEGKSLTEITVTVSPMNGQIIVADNG-GIPVVKHG-VTNEWLPEMLFGSL 125

Query: 138 HAGGKFDNSTYEI----SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           +AG  F++   E     SGG +G G S+VN  S    V  +     ++Q F   +     
Sbjct: 126 YAGSNFNDEDEEYNNQKSGGQNGEGASLVNVFSKWFRVATSDGKKSYAQLFEDNMSKKSN 185

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL--KMTQSKAYLSGRVKTCWSCDKEI 251
                   + GT I + PD    G K       L+  +     A  + R+K   +  +  
Sbjct: 186 PVISNTPKEFGTTIAWIPDYARLGVKGLDQNNLLMIYRRAFEVAACNPRLKVVLNGKQIR 245

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
            +++      +++  G                                G    A+A    
Sbjct: 246 IDRF--GHFVDYFHAGSAVDES--------------------------GEWSVAVAPSSG 277

Query: 312 NPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILS 371
                SY N+I T  GG H   +   +   I+        K    +    +       ++
Sbjct: 278 TFMHASYVNSIATHIGGPHVDYVADQIVAAIR---PQLVKKFKTELKPAVIKNHMSLFIA 334

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
             I  P F  QTK ++ +  +Q        D      ++  +         +   ++   
Sbjct: 335 ADINNPRFDSQTKERMTTPVSQFGTSYKPSDKLIRKALEFVMAGLSKELASLRNEQDDAE 394

Query: 432 RRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
             K ++   K   R++         ++    G  L + EGDSA      AR+     + P
Sbjct: 395 FEKAKKDISKRDYREIEKY--YPATARGDRSGCSLLLTEGDSASNPILNARDTKKIGLFP 452

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHI 551
           LRGK +N  +A   K+ NN++  +L    G     Q  +   RY + ++ TDAD DG HI
Sbjct: 453 LRGKFINCLNAPRTKVMNNEEFKNLCTIHGGAVPGQPLDIS-RYPQTVVATDADDDGIHI 511

Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK 611
             LL+T +     + + Q  L L+  P  R+  G       +    ++ L+        K
Sbjct: 512 RGLLITLYCTYWPEYVRQGRLKLLRTPYMRVWCGKVMHEFMNNAEYEEFLKTPDAKKITK 571

Query: 612 IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE-R 670
            +  +  GLG       K    + +  T   V ++           S+    G +A + R
Sbjct: 572 KKYLK--GLGGNSTEDFKRILNNLDAYT-TTVTLDDGYQ------QSLKNGFGDEAADYR 622

Query: 671 FKF 673
             +
Sbjct: 623 KTW 625


>gi|2196852|gb|AAB80843.1| DNA gyrase beta-subunit [Citrobacter sp. JYME-1]
          Length = 419

 Score =  250 bits (639), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 155/430 (36%), Positives = 243/430 (56%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHA  KF+ ++ ++SGG  GV +SVVNALS +L + + R+  +  Q +  G+P 
Sbjct: 1   EVIMTVLHALEKFEANSNDVSGGRPGVRVSVVNALSQKLELVIRREGKVHQQTYVHGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    +     GT++ F P  + F +   F+   L K  +  ++L+  V       ++
Sbjct: 61  APLAVTGET-EATGTQVRFWPSHETFTNVVEFEYEILAKRLRELSFLNSGVSIRLRDKRD 119

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +
Sbjct: 120 GKE-------DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     +
Sbjct: 170 GFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLI 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ + 
Sbjct: 230 AVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQPMNELLSEYLLENPSDAKIVVGKIIDAAR 289

Query: 428 ERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   R+ R    RK A+    LPGKLADC +     +EL++VEGDSAGG AKQ RNR N
Sbjct: 290 AREAARRAREMTRRKGALDLAGLPGKLADCQERDPAHSELYLVEGDSAGGFAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC      Y  + +R + V++MTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGGDVYNPDKVRGQSVVMMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHILTLL 419


>gi|17367217|sp|Q9X3Y5|GYRB_BACMY RecName: Full=DNA gyrase subunit B
 gi|4588024|gb|AAD25957.1|AF090332_1 gyrase B subunit [Bacillus mycoides]
          Length = 404

 Score =  250 bits (639), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 157/414 (37%), Positives = 230/414 (55%), Gaps = 14/414 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKFD   Y++SGGLHGVG SVVNALS EL V V R   I  QK+ RG+P + L    
Sbjct: 1   HAGGKFDGGGYKVSGGLHGVGASVVNALSTELEVFVHRDGKIHYQKYERGVPAADLRVIG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +  ++ GT   F+PD +IF +   ++   L    +  A+L+  +K      +E  +K   
Sbjct: 61  ET-DRTGTITRFKPDSEIFTETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK--- 116

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-T 316
              +EF++ GG+K+Y++    ++  I  E       K G     VE A+ + E       
Sbjct: 117 ---KEFHYEGGIKSYVEHLNRSKQPIHEEPVYVDGSKDGIQ---VEVALQYNEGYTNHIY 170

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFI 374
           S+ N I T EGGTHE G + ALTR I  Y       +    ++  +D+      I+S+  
Sbjct: 171 SFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKH 230

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRR 433
             P+F GQTKTKL + +A+   E+   + F+ +L++NP  A K+++   +        ++
Sbjct: 231 PNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKK 290

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            +    RK+A+    LPGKLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+
Sbjct: 291 ARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLK 350

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVD 547
           GKI+NV  A  +KI +N ++  ++ A+G      +  E  RY KVIIMTDADVD
Sbjct: 351 GKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFAIEKARYHKVIIMTDADVD 404


>gi|328349745|emb|CBY89180.1| GyrB protein [Flavobacterium sp. R-38373]
          Length = 426

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 156/432 (36%), Positives = 238/432 (55%), Gaps = 15/432 (3%)

Query: 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN 177
           V+ H K    S LE+++T + AGGKFD  +Y++SGGLHGVG+S VNALS+ L  TV R  
Sbjct: 1   VDMHKK-EGVSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSCVNALSNHLRATVFRDG 59

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            ++ Q++ +G    P+++  +  +KRGT +TF+PD  IF     ++   +    +  ++L
Sbjct: 60  KVYEQEYEKGKAQYPVKQIGET-DKRGTMVTFKPDDTIFTQSTEYNYDTIAGRMRELSFL 118

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +    +  +E  EK      E F+   GLK +++   + R  I S + +   EK   
Sbjct: 119 NKGITITLTDKRETDEKG-EFVSEIFHSDEGLKEFVRFLDKGREGIISHVISMDHEK--- 174

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRA 354
               VE A+ +       I SY N I T EGGTH  G R+ LTR +KKYA+ +    K  
Sbjct: 175 GEIPVEVALIYNTSYSENIFSYVNNINTHEGGTHLQGFRMGLTRTLKKYADSSGLLDKLK 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             I  DD       I+SV ++EP+F GQTKTKL + +    V  A+ +  ++YL +NP +
Sbjct: 235 FEITGDDFREGLTAIISVKVQEPQFEGQTKTKLGNREVVSPVSQAVSEMLENYLEENPND 294

Query: 415 ATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA-DCSQNIAHGTELFIVEGDS 473
           A  +++ VI  ++ R   +K RE+ ++  +           DCS+      E+++VEGDS
Sbjct: 295 AKTIVQKVILAAQARHAAKKAREMVQRKTVLGGGGLPGKLSDCSEQDPAKCEVYLVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE--- 530
           AGG+AKQ R+R+ QA+LPLRGKILNV  A   K+  N++I ++  ALG    ++      
Sbjct: 355 AGGTAKQGRDRNFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTIGTEEDSKAL 414

Query: 531 --EDLRYEKVII 540
             E LRY KVII
Sbjct: 415 NLEKLRYHKVII 426


>gi|27530060|dbj|BAC53885.1| DNA gyrase B subunit [Legionella rubrilucens]
          Length = 282

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 98/288 (34%), Positives = 159/288 (55%), Gaps = 14/288 (4%)

Query: 72  KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLE 131
             LHH+  EV+DN++DE +AG+   I V++  +  +TV D+GRGIPV+ H K   +S  E
Sbjct: 2   TGLHHMVFEVVDNSIDEALAGHCKEIFVTIHADESITVKDDGRGIPVDIH-KEEGRSAAE 60

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           +I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+ELH+T+ R   +  Q +  G+P +
Sbjct: 61  VIMTILHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLTIRRHGKVHEQHYRNGVPDA 120

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
           PL       N  GT++ F+P    F +   F    L K  +  ++L+  V      ++  
Sbjct: 121 PLAITGDA-NATGTQVWFKPSSNTFSN-IEFHYDILAKRLRELSFLNSGVCIHLFDER-- 176

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
                  +++ F + GG++ +++    N++ I   +F+   EK      TV+ ++ W + 
Sbjct: 177 -----TQKQDTFRYEGGIQAFVEHFNRNKTPIMPIVFSLTAEKDNI---TVDLSMQWNDS 228

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII 358
                  + N I   +GGTH +G R ALTR +  Y E     +   + 
Sbjct: 229 FQETFFCFTNNIPQRDGGTHLAGFRAALTRTLNTYIENEGYAKKAKVT 276


>gi|27530056|dbj|BAC53883.1| DNA gyrase B subunit [Legionella hackeliae]
          Length = 290

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 99/288 (34%), Positives = 160/288 (55%), Gaps = 14/288 (4%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
           D   LHH+  EV+DN++DE + GY + I V++  +  ++V D+GRGIPV+ H K   +S 
Sbjct: 2   DGTGLHHMVFEVVDNSIDEALPGYCHEINVTIHSDESISVKDDGRGIPVDIH-KEEGRSA 60

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+ELH+ + R   +  Q +  G+P
Sbjct: 61  AEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLQIRRNGKVHEQHYRNGVP 120

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            +PL       N  GT++ F+P    F +   F    L K  +  ++L+  V      ++
Sbjct: 121 DAPLAVTGDA-NSTGTQVWFKPSANTFTN-IEFHYDILAKRLRELSFLNSGVCIHLYDER 178

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
                    +++ F + GG++ +++    N++ I   +FT  +E+      +VE A+ W 
Sbjct: 179 -------TQKRDTFRYEGGIQAFVEHLNRNKTPIMPTVFTLASERDNI---SVELAMQWN 228

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
           +     I  + N I   +GGTH +G R ALTR +  Y E     +   
Sbjct: 229 DSFQETIFCFTNNIPQRDGGTHLAGFRAALTRTLNTYIENEGFAKKAK 276


>gi|4996790|dbj|BAA78440.1| subunit B protein of DNA gyrase [bacterium rM1]
          Length = 300

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 103/308 (33%), Positives = 166/308 (53%), Gaps = 14/308 (4%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFP-NKS 128
           D   LHH+  EV+DNA+DE +AG+ + I V++  +  ++V DNGRGIP + H      +S
Sbjct: 2   DGTGLHHMVFEVVDNAIDEALAGHCDDIVVTIHADNSVSVTDNGRGIPTDIHKDDEFGRS 61

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
             EI++T LHAGGKFD+++Y++SGGLHGVG+S VNALS  L +T+ R       +F +G 
Sbjct: 62  AAEIVMTELHAGGKFDHNSYKVSGGLHGVGVSCVNALSQWLRLTIWRNGQTHEMEFRQGE 121

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
            + PL       +++GT + F  D  IF +   +    L K  +  ++L+  VK     +
Sbjct: 122 RVEPLSVTG-TADRKGTSVRFLADGTIFEN-IEYQYDVLAKRLRELSFLNNGVKVRLVDE 179

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIA 307
           ++  E       E+F F GG+K ++     +++++   +F+  TE   G     V+ A+ 
Sbjct: 180 RQGKE-------EDFAFLGGVKGFVDYINRSKTVLHPNVFSVSTESSAGGETVGVDVAMQ 232

Query: 308 WCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMI 364
           W +     +  + N I   +GG+H +GLR A+TR I KY    +   K  +    DD+  
Sbjct: 233 WNDSYSETVLCFTNNIPQRDGGSHLTGLRAAMTRVINKYIADNELAKKAKVDTSGDDMRE 292

Query: 365 SAVGILSV 372
               +LSV
Sbjct: 293 GLACVLSV 300


>gi|328349757|emb|CBY89186.1| GyrB protein [Flavobacterium sp. R-37608]
          Length = 426

 Score =  250 bits (638), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 163/432 (37%), Positives = 235/432 (54%), Gaps = 15/432 (3%)

Query: 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN 177
           V+ H K    S LE+++T + AGGKFD  +Y++SGGLHGVG+SVVNALS  +  TV R  
Sbjct: 1   VDLHKK-EGVSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSKHMKSTVFRDG 59

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            I+ Q++ RG  + P+++  +  +KRGT  TF PD  IF     F    L    +  +YL
Sbjct: 60  KIYEQEYERGKSIYPVKQIGET-DKRGTMQTFYPDDTIFTQTIEFSFETLSARMRELSYL 118

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +   ++  +E  +K G   +E F+   GLK Y++    NR  I S + +   EK   
Sbjct: 119 NKGITITFTDKRE-LDKDGNYVQEVFHSDEGLKEYIRYLDGNREPIISHVISMDNEK--- 174

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRA 354
               VE A+ +       I SY N I T EGGTH  G R  LTR +KKYA+ +    K  
Sbjct: 175 GEIPVEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADSSGLLDKLK 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             I  DD       I+SV + EP+F GQTKTKL + +    V  A+ +  ++YL +NP +
Sbjct: 235 FEISGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVVSPVSQAVSEMLENYLEENPND 294

Query: 415 ATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA-DCSQNIAHGTELFIVEGDS 473
           A  +++ VI  ++ R   +K RE+ ++  +           DCS+      E+++VEGDS
Sbjct: 295 AKIIVQKVILAAQARHAAKKAREMVQRKTVLGGGGLPGKLSDCSEQDPAKCEVYLVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE--- 530
           AGG+AKQ R+R  QA+LPLRGKILNV  A   K+  N++I ++  ALG    +       
Sbjct: 355 AGGTAKQGRDRQFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTIGTAEDSKAL 414

Query: 531 --EDLRYEKVII 540
             E LRY KVII
Sbjct: 415 NLEKLRYHKVII 426


>gi|307939312|gb|ADN95847.1| DNA gyrase B [Hymenobacter sp. VUG-A48]
          Length = 436

 Score =  250 bits (638), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 169/442 (38%), Positives = 251/442 (56%), Gaps = 27/442 (6%)

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFD  +Y++SGGLHGVG+S VNALS +L VTV R    + Q++  G P  P++
Sbjct: 1   TVLHAGGKFDKGSYKVSGGLHGVGVSCVNALSTDLKVTVRRNGHKYEQEYKIGFPQYPVK 60

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
           +     ++ GT + F PD  IF +   +   ++    +  +YL+  ++   +  +E  E 
Sbjct: 61  EVGDT-DEHGTEVQFLPDASIFTETV-YQYDKVAGRLRDLSYLNKGIRITLTDRRETVE- 117

Query: 255 YGIPEKEEFYFPGGLKTYLQT-KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
            G    EEF+  GGL+ ++Q    E R  + SE    ++EK GT    VE A+ +     
Sbjct: 118 GGEFRGEEFFSTGGLRDFVQYLDGEQRPSLLSEPIYVESEKGGTP---VEVALQYNTSYQ 174

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGIL 370
             + SY N I T EGGTH +G R A+TR +K Y +  +   K  + I  DD       ++
Sbjct: 175 ENVYSYVNNINTIEGGTHVAGFRSAVTRVLKTYGDKNKLFEKAKVEITGDDFREGLTAVI 234

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV + EP+F GQTKTKL + +    V + + +    YL +NP +A +++E VI  ++ R+
Sbjct: 235 SVKVMEPQFEGQTKTKLGNSEVSGAVNSVVGEILTQYLDENPNQANRIMEKVILAAKARI 294

Query: 431 RRRKQREVNRKTAIRKLRL-PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK +++ ++  +      PGKLADCS++     EL++VEGDSAGG+AKQ RNR+ QA+
Sbjct: 295 AARKAKDMVQRKGVLSSNSLPGKLADCSESDPEICELYLVEGDSAGGTAKQGRNRAFQAI 354

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY----------------REEDL 533
           +PLRGKILNV  A   +I  N++I +++ ALG     +                   + L
Sbjct: 355 MPLRGKILNVEKAQEHRILENEEIRNMITALGVSFNERKSLAFTTDDTGVETGPLNFDKL 414

Query: 534 RYEKVIIMTDADVDGAHIASLL 555
           RY KVIIMTDADVDG+HI +LL
Sbjct: 415 RYHKVIIMTDADVDGSHIRTLL 436


>gi|148971403|gb|ABR20239.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  250 bits (638), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 159/428 (37%), Positives = 229/428 (53%), Gaps = 13/428 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFDN+TY+++GGLHGVG+SVVNALSD L + + ++   F Q + +G+  
Sbjct: 1   EVIMTVLHAGGKFDNNTYKVAGGLHGVGVSVVNALSDTLILEIDQKGQHFHQVYHKGVLE 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL        + GT I F PD  I      F    L    +  +YL+  +    + ++ 
Sbjct: 61  APLAVTG-TSERTGTAIRFTPDLTIMET-DQFSYDVLAHRFRELSYLNPALTITLAEEET 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
           + E         F+  GG++++L    EN+ +I   ++  KT + G+    V        
Sbjct: 119 LRE-------AVFHDEGGIRSFLAFVNENKRIIHDSLYFRKTFENGSL-FEVSLQYQDTT 170

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
           +   + SY N I T EGG+H  G R ALTR + +Y       +   +  +D+      I+
Sbjct: 171 DAETLLSYVNNIPTREGGSHVRGFRSALTRVVNRYIREKNLNKGEEVKGEDIREGLSSII 230

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           S+ I  P+F GQTK KL S      +E  L +  +    +    A  + +  I  ++ R 
Sbjct: 231 SIKIPNPQFEGQTKAKLGSSWVSGAMETFLSEALEDAFEKQGTVARAIADKAILTAQARE 290

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK RE   RK  +    LPGKLADC +N     EL+IVEGDSAGGSAKQ R+R  QA+
Sbjct: 291 AARKARELTKRKNVLEGSNLPGKLADCQENDPAKAELYIVEGDSAGGSAKQGRDRRFQAI 350

Query: 490 LPLRGKILNVASAG-SEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVD 547
           LPL+GKILNV      EK   + ++  L+ A+GC    +      LRY K+IIMTDADVD
Sbjct: 351 LPLKGKILNVEKTKGVEKFITHDEVRALITAVGCGLGGEEFSLKNLRYHKIIIMTDADVD 410

Query: 548 GAHIASLL 555
           G+HI +LL
Sbjct: 411 GSHIRTLL 418


>gi|2196854|gb|AAB80844.1| DNA gyrase beta-subunit [Citrobacter sp. MAM-1]
          Length = 419

 Score =  250 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 156/430 (36%), Positives = 243/430 (56%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHA  KF+ ++ E+SGG  GV +SVVNALS +L + + R+  +  Q +  G+P 
Sbjct: 1   EVIMTVLHALEKFEANSNEVSGGRPGVRVSVVNALSQKLELVIRREGKVHQQTYVHGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    +     GT++ F P  + F +   F+   L K  +  ++L+  V       ++
Sbjct: 61  APLAVTGET-EATGTQVRFWPSHETFTNVVEFEYEILAKRLRELSFLNSGVSIRLRDKRD 119

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +
Sbjct: 120 GKE-------DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     +
Sbjct: 170 GFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLI 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ + 
Sbjct: 230 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAAR 289

Query: 428 ERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   R+ R    RK A+    LPGKLADC +     +EL++VEGDSAGG AKQ RNR N
Sbjct: 290 AREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGFAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC      Y  + +R + V++MTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGGDVYNPDKVRGQSVVMMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHILTLL 419


>gi|4589347|gb|AAD26461.1|AF136389_1 gyrase B subunit [Bacillus cereus]
          Length = 406

 Score =  250 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 157/416 (37%), Positives = 233/416 (56%), Gaps = 14/416 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D    E+SGG HGVG SVVNALS EL V V R+  I  QK+ RGIP++ L+      ++ 
Sbjct: 1   DGGGNEVSGGWHGVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT   F+PDP+IF +   ++   L    +  A+L+  +K      +E  +K      +EF
Sbjct: 60  GTITRFKPDPEIFQETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEF 113

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTI 322
           ++ GG+K+Y++    ++  I  E    +  K G     VE ++ + E       S+ N I
Sbjct: 114 HYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G + ALTR I  Y       +    ++  +D+      I+S+    P+F 
Sbjct: 171 HTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFE 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVN 439
           GQTKTKL + +A+   E+   + F+ +L++NP  A K++E   +        ++ +    
Sbjct: 231 GQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK+A+    LPGKLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV
Sbjct: 291 RKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLL 555
             A  +KI +N ++  ++ A+G      +  E  RY KVIIMTDADVDG+HI +LL
Sbjct: 351 EKARLDKILSNDEVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGSHIRTLL 406


>gi|18157436|dbj|BAB83770.1| DNA gyrase subunit B [Rhodobacter azotoformans]
          Length = 312

 Score =  250 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 102/320 (31%), Positives = 158/320 (49%), Gaps = 18/320 (5%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DN +DE +AG+A  + V +  +  ++V DNGRGIPV+ H     
Sbjct: 1   DTDDGSGLHHMVYEVVDNGIDEALAGHATAVTVKIHADSSVSVRDNGRGIPVDMHA-SEG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALSD L + + R       +F  
Sbjct: 60  VSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLELRIWRNGKEHFARFEN 119

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRP-----DPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241
           G  +  L        ++GT + F        P        +    L    +  A+L+  V
Sbjct: 120 GETVEHLRVVRDAPGEKGTEVRFLAAAKTNRPDGTFSNLDYSFKTLENRLRELAFLNSGV 179

Query: 242 KTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
           +     ++        P   E ++ GG++ +++    ++S +  E      E+ G     
Sbjct: 180 RILLEDER-----PAEPLHSELFYEGGVREFVRYLDRSKSPVMPEPIFITGERGGI---G 231

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--II 358
           VE A+ W +     +  + N I   +GGTH +G R ALTR I KYA+ +   R       
Sbjct: 232 VEIAMWWNDSYHETVLPFTNNIPQRDGGTHLAGFRGALTRTITKYAQDSGIARREKVDFT 291

Query: 359 SDDLMISAVGILSVFIREPE 378
            DD       +LSV + +P+
Sbjct: 292 GDDAREGLTCVLSVKVPDPK 311


>gi|198250523|gb|ACH85243.1| DNA gyrase subunit B [Paenibacillus apiarius]
          Length = 404

 Score =  250 bits (637), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 166/415 (40%), Positives = 235/415 (56%), Gaps = 15/415 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKF    Y++SGGLHGVG+SVVNALS+ L VTV R+  I  Q++ RG+P + L+   
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSEMLLVTVKREGHIHQQEYRRGVPQADLKVIG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +     GT I F+PDP +F +   ++   LL   +  A+L+  ++   S ++        
Sbjct: 61  ETAE-TGTTIKFKPDPDVFTETTEYEYDILLSRIRELAFLNKGIEMVLSDER-------T 112

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
            + + F + GG+  ++     NR  +       +  K      T E A+ + +     I 
Sbjct: 113 GQSQTFKYEGGIMEFVDYLNRNREKMHEPPIYVEGSKDNI---TCEIALQYNDSYTENIY 169

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFI 374
           S+ N I T EGGTHESG + ALTR I  YA  T   +    ++  DD+      I+SV I
Sbjct: 170 SFANNIHTHEGGTHESGFKSALTRIINDYARKTNLVKDSTSNLSGDDVREGLTAIISVKI 229

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP+F GQTKTKL + + +  VE+   + F  +L +NP  + K++E  ++ S  R   R+
Sbjct: 230 PEPQFEGQTKTKLGNSEVRGIVESVFSEKFMDFLNENPAISRKVVEKGLQASRAREAARR 289

Query: 435 QRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            RE   RK+A+    LPGKLADCS   A   ELFIVEGDSAGGSAKQ R+R  QA+LPL+
Sbjct: 290 ARELTRRKSALEVSSLPGKLADCSSKDAAQCELFIVEGDSAGGSAKQGRDRHFQAILPLK 349

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           GKILNV  +  ++I +N +I  ++ ALG      +     RY K+IIMTDADVDG
Sbjct: 350 GKILNVEKSRLDRILSNAEIRAIITALGTSIGEDFDLSRARYHKIIIMTDADVDG 404


>gi|27530054|dbj|BAC53882.1| DNA gyrase B subunit [Legionella cherrii]
          Length = 281

 Score =  250 bits (637), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 101/294 (34%), Positives = 161/294 (54%), Gaps = 14/294 (4%)

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133
           LHH+  EV+DN++DE +AG+   I V++  +  +TV D+GRGIPV+ H K   +S  E+I
Sbjct: 1   LHHMVFEVVDNSIDEALAGHCKEIFVTIHSDESITVKDDGRGIPVDIH-KEEGRSAAEVI 59

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           +T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+ELH+TV R   I  Q +  G+P +P+
Sbjct: 60  MTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLTVRRHGKIHEQHYRNGVPDAPM 119

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
            +        GT+I F+P  + F +   F    L K  +  +YL+  V      ++    
Sbjct: 120 AETGDAT-TTGTQIWFKPSAETFSN-IEFHYDILAKRLRELSYLNSGVCIHLYDERSQ-- 175

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP 313
                 ++ F++ GG+  +++   +N+++I   +F+   EK       VE ++ W +   
Sbjct: 176 -----RQDTFHYEGGITAFVEHLNKNKNVIMPAVFSMTAEKDNI---VVELSMQWNDSYQ 227

Query: 314 EI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISA 366
           E    + N I   +GGTH +G R ALTR +  Y E     +   +         
Sbjct: 228 ETLYCFTNNIPQRDGGTHMAGFRAALTRTLNNYIENEGYAKKAKVSPTGDDARE 281


>gi|269799074|gb|ACZ43815.1| DNA gyrase subunit B [Moritella viscosa]
 gi|269799092|gb|ACZ43824.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 375

 Score =  250 bits (637), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 132/386 (34%), Positives = 212/386 (54%), Gaps = 16/386 (4%)

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AG+   I V++  +G ++V D+GRGIPV+ H +    S  E+ILT LHAGGKFD+++Y++
Sbjct: 1   AGHCTDIVVTIHDDGSVSVSDDGRGIPVDIHEE-EGVSAAEVILTVLHAGGKFDDNSYKV 59

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS++L +T+ R   I +Q +  G+P  P+ +   V +  GT + F 
Sbjct: 60  SGGLHGVGVSVVNALSEKLELTIFRHGKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFW 118

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F    L K  +  ++L+  V      ++E        + + F + GG+K
Sbjct: 119 PSHETFTNTL-FHYDILAKRLRELSFLNSGVSIKLIDERED------GKSDHFVYEGGIK 171

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            ++     N++ I+ + F    E++     TVE A+ W +     I  + N I   +GGT
Sbjct: 172 AFVDYLNVNKTPINKDAFHFSVERED--GITVEVAMQWNDGFQEGIYCFTNNIPQRDGGT 229

Query: 330 HESGLRVALTRGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           H +G R ALTR +  Y E     +  ++ +   DD       ++SV + +P+F+ QTK K
Sbjct: 230 HLAGFRGALTRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDK 289

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIR 445
           LVS + +  VE A+ +    YL++NP EA+ ++  +I+        R+ +    RK A+ 
Sbjct: 290 LVSSEVKSAVEQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKARDMTRRKGALD 349

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEG 471
              LPGKLADC +     +EL+IVEG
Sbjct: 350 LAGLPGKLADCQEKDPALSELYIVEG 375


>gi|148971297|gb|ABR20186.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  250 bits (637), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 167/428 (39%), Positives = 249/428 (58%), Gaps = 13/428 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKF+N  Y++SGGLHGVG++VVNALS+   VTV R    + Q FSRG+P 
Sbjct: 1   EVIMTVLHAGGKFENDVYKVSGGLHGVGLTVVNALSEFTIVTVRRDGKEYRQSFSRGLPT 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
             LE   +     GT I F+PD +IF  +  FD+  L +  +   +L+  +      ++ 
Sbjct: 61  GGLEIIGEAEG-TGTMIRFKPDAEIFSSQN-FDSGSLKERLRDTVFLNPGISITLVDER- 117

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
               +G+ E+E++Y   G+  ++    + +  I+  I   K E        +++   + E
Sbjct: 118 ----FGLNEEEKYYSEKGVADFIAYLNKGKEAITEIISGKKAEGGIVVEFAIQYNTGYEE 173

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVG 368
           +   + S+ NTI TDEGGTH +G   ALT+ +  Y    +   K+A  I  +D+     G
Sbjct: 174 K---VESFVNTIRTDEGGTHLTGFHSALTKAVSNYISRNKASAKQAERISGEDVREGLAG 230

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           ++SV +++PEF GQTK KL ++  +  VE+ +      Y  ++P +   ++E     +  
Sbjct: 231 VVSVMMQDPEFEGQTKEKLGNIQVKALVESCVYQQLSRYFEEHPQDIRMIIEKASSAANA 290

Query: 429 RLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
           R   RK RE+ RK +I     LPGKL DC ++    TELFIVEG+SAGGS+KQ R++  Q
Sbjct: 291 RESARKARELARKKSIFDDNILPGKLTDCIESDPERTELFIVEGESAGGSSKQGRDKKIQ 350

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVD 547
           AVLPLRGKILNV  A SEKI +N +I  ++ A G      +  +++RY K+IIMTDADVD
Sbjct: 351 AVLPLRGKILNVEKASSEKIFDNAEIKAMIAAFGTGINESFNPDNIRYRKIIIMTDADVD 410

Query: 548 GAHIASLL 555
           G+HI +LL
Sbjct: 411 GSHIRTLL 418


>gi|269799106|gb|ACZ43831.1| DNA gyrase subunit B [Moritella viscosa]
 gi|269799108|gb|ACZ43832.1| DNA gyrase subunit B [Moritella viscosa]
 gi|269799124|gb|ACZ43840.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 374

 Score =  250 bits (637), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 130/385 (33%), Positives = 210/385 (54%), Gaps = 16/385 (4%)

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+   + V++  +G ++V D+GRGIPV+ H +    S  E+ILT LHAGGKFD+++Y++S
Sbjct: 1   GHCTDVVVTIHEDGSVSVSDDGRGIPVDIHEE-EGVSAAEVILTVLHAGGKFDDNSYKVS 59

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS++L +T+ R   I  Q +  G P +P+     + +  GT + F P
Sbjct: 60  GGLHGVGVSVVNALSEKLELTIHRHGHIHQQIYRHGEPQAPIAVIGDI-DTTGTELRFWP 118

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++E        + + F + GG+K 
Sbjct: 119 SHETFTNTL-FHYDILAKRLRELSFLNSGVSIKLIDERED------GKSDHFVYEGGIKA 171

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++     N++ I+ + F    E++     TVE A+ W +     I  + N I   +GGTH
Sbjct: 172 FVDYLNVNKTPINKDAFHFSVERED--GITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTH 229

Query: 331 ESGLRVALTRGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
            +G R ALTR +  Y E     +  ++ +   DD       ++SV + +P+F+ QTK KL
Sbjct: 230 LAGFRGALTRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKL 289

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLRRRKQREVNRKTAIRK 446
           VS + +  VE A+ +    YL++NP EA+ ++  +I+ S      R+ +    RK A+  
Sbjct: 290 VSSEVKSAVEQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKAREMTRRKGALDL 349

Query: 447 LRLPGKLADCSQNIAHGTELFIVEG 471
             LPGKLADC +     +EL+IVEG
Sbjct: 350 AGLPGKLADCQEKDPALSELYIVEG 374


>gi|4996832|dbj|BAA78461.1| subunit B protein of DNA gyrase [bacterium rA9]
          Length = 282

 Score =  249 bits (636), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 100/287 (34%), Positives = 158/287 (55%), Gaps = 12/287 (4%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFP-NKS 128
           D   LHH+  EV+DNA+DE +AGY + I V++  +  ++V DNGRGIP   H     ++S
Sbjct: 4   DGTGLHHMVFEVVDNAIDEALAGYCDDIVVTIHADNSISVTDNGRGIPTAIHKDDEHHRS 63

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
             EI++T LHAGGKFD ++Y++SGGLHGVG+S VNALS+ L +T+ R       +F RG 
Sbjct: 64  AAEIVMTELHAGGKFDQNSYKVSGGLHGVGVSCVNALSEWLRLTIWRNGEEHQMEFRRGE 123

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
            ++PL       ++ GTR+ +  D +IF +   +    L +  +  ++L+  VK     +
Sbjct: 124 RVAPLAVTGPA-DRTGTRVQYLADAEIFNN-IDYTYEILARRLRELSFLNNGVKIRLVDE 181

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIA 307
           +         + E   F GG+K ++Q     ++++   IF   TE + G  R  VE A+ 
Sbjct: 182 R-------TGQDENLAFLGGVKGFVQYINRAKTVLHDNIFAVTTESEAGGVRVGVEVAMQ 234

Query: 308 WCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR 353
           W +     +  + N I   +GGTH +GLR A+TR + KY    +  +
Sbjct: 235 WNDSYAETVLCFTNNIPQRDGGTHLTGLRAAMTRVLNKYITDNELAK 281


>gi|183987578|gb|ACC65779.1| topoisomerase II [Lyophyllum shimeji]
          Length = 692

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 121/541 (22%), Positives = 214/541 (39%), Gaps = 34/541 (6%)

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG---TRITFR 210
            +G G  + N  S E  V  A +NT    K +    +S   K +  +N +G   TR+TF+
Sbjct: 1   RNGYGAKLANIYSHEFTVETADKNTQLKYKQTWTDNMSVCGKPKITKNGKGEEWTRVTFK 60

Query: 211 PDPKIFGDK--AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           PD K FG        A  L K     A     VK   + ++    K    ++    +   
Sbjct: 61  PDLKRFGMDKIDEDTAGLLRKRVYDMAGTVKDVKVFLNDERL---KIKNFKQYVEMYLQS 117

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGG 328
                       +     +   +           E A A  E   +  S+ N+I T +GG
Sbjct: 118 AHAEAAETSGGAAQAKPTVIYEQIS------ARWEIAFAVSEGTFQFVSFANSISTTKGG 171

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           TH + +   + +     A + +  +A ++    +       ++  I  P F  QTK  L 
Sbjct: 172 THVTYISDQIAK--NLVAAIAKKNKAATVKPAQIKNHMWIFVNALIENPTFDSQTKETLT 229

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR 448
              ++   +  L + F   + ++      +L W   +++++++R    + +R   + KL 
Sbjct: 230 LPASKFGTKPVLSEEFLKKVQKS-SIIDNILNWAKYKADQQIKRTDGTKRSRLIGLTKLS 288

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSE 505
                       A    L + EGDSA   A        R N  V PLRGK+ NV  A  E
Sbjct: 289 DANN---AGTKHAKNCTLILTEGDSAKALAVAGLGVVGRDNFGVFPLRGKLFNVREARHE 345

Query: 506 KIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           +I  N++I ++ + +G +    Y     LRY +++IMTD D DG+HI  L++ F      
Sbjct: 346 QIMKNEEIQNIKKIMGLQHNKDYTNTMSLRYGRLMIMTDQDHDGSHIKGLIINFLDHFYP 405

Query: 565 DLIEQK-HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
            L++    L     P+ R+T+G +          ++ LEE       K E   FKGLG  
Sbjct: 406 SLLKLPEFLVEFVTPIVRVTKGKQRHDFFTIPEYEQWLEETPSSD--KWEAKYFKGLGTS 463

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ--ERASFI 681
             +  ++      K  +            +    + +K    KAD+R ++++  +  +++
Sbjct: 464 TDADARDYFGHMKKHMIPFAPTQDG--DKEHIDLAFSK---KKADDRKEWLRHFKPGTYL 518

Query: 682 D 682
           D
Sbjct: 519 D 519


>gi|126035196|gb|ABN72351.1| gyrase B subunit [Aeromonas caviae]
          Length = 411

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 165/423 (39%), Positives = 246/423 (58%), Gaps = 17/423 (4%)

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
           +E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P
Sbjct: 1   IEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEP 60

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            +PL++        GT + F P P IF D   F    L K  +  ++L+  V      ++
Sbjct: 61  QAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDER 118

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
           +  E         F + GG+K +++   +N++ I  ++F   TE+ G     VE A+ W 
Sbjct: 119 DGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWN 168

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISA 366
           +     +  + N I   +GGTH  G R ALTR +  Y +      K   +   DD+    
Sbjct: 169 DAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNNYMDKEDYSKKAKSAASGDDVREGL 228

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
           + ++SV + + +F+ QTK KLVS + +  VE A+ +    +L++NP +A  ++  +I+ +
Sbjct: 229 IAVISVKVPDLKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAA 288

Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
             R   RK RE   RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR 
Sbjct: 289 RAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRK 348

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           NQA+LPL+GKILNV  A   K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDA
Sbjct: 349 NQAILPLKGKILNVEKARFGKMISSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMTDA 408

Query: 545 DVD 547
           DV 
Sbjct: 409 DVT 411


>gi|148616446|gb|ABQ96966.1| GyrB [Nocardiopsis composta]
          Length = 422

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 153/428 (35%), Positives = 235/428 (54%), Gaps = 10/428 (2%)

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
           +E+I+T LHAGGKFD  +Y +SGGLHGVG+SVVNALS  L   V R   +  Q +    P
Sbjct: 1   IEVIMTVLHAGGKFDGKSYAVSGGLHGVGVSVVNALSTRLEAEVRRDGHVGRQNYEMTRP 60

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            + + K E+     GT+ITF  DP IF     ++   L +  Q  A+L+  +      ++
Sbjct: 61  AADVAKGEETAE-TGTQITFWADPSIFETTV-YNYETLARRMQEMAFLNKGLSITLRDER 118

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
                   P  + F++  GL  +++     +    + I   + + +G    +VE A+ W 
Sbjct: 119 -PEFVDDGPAVQTFHYDEGLVDFVRHINTKKDPAHASIIDFEEDGEGI---SVEIAMQWN 174

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISA 366
           +     + ++ NTI T EGGTHE G R ALT  + +YA   +   ++  ++  DD+    
Sbjct: 175 QSFTSSVHTFANTINTAEGGTHEEGFRAALTSIVNRYARDQKLLREKDDNLTGDDIREGL 234

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             I+SV + +P+F GQTKTKL + +A+  V+    +    +  +NP EA  ++    + +
Sbjct: 235 TAIISVKLADPQFEGQTKTKLGNTEAKSFVQRVANEHLRDWFERNPGEAKDIVTKASQAA 294

Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
             R+  R+ R+   RKT +    LPGKL+DC       +EL+IVEGDSAGGSAK  RN  
Sbjct: 295 RARIAARQARDLTRRKTLLESTSLPGKLSDCQSTEPEKSELYIVEGDSAGGSAKGGRNPI 354

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545
            QA+LP+RGKILNV  +  ++I  N ++  ++ ALG      +  E LRY K+I+MTDAD
Sbjct: 355 YQAILPIRGKILNVEKSRIDRILKNNEVQAIITALGTGIHDDFDIEKLRYHKIILMTDAD 414

Query: 546 VDGAHIAS 553
           VDG+ + +
Sbjct: 415 VDGSLVRT 422


>gi|312271594|gb|ADQ56152.1| DNA gyrase subunit B [Vibrio sp. HB0308-1B5]
          Length = 373

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 129/384 (33%), Positives = 206/384 (53%), Gaps = 15/384 (3%)

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           GY   I V++  +  ++V D+GRGIP E H +    S  E+I+T LHAGGKFD+++Y++S
Sbjct: 1   GYCKDIVVTIHEDNSVSVSDDGRGIPTEMHSE-EKVSAAEVIMTVLHAGGKFDDNSYKVS 59

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+++ +T+ R   I SQ +  G+P +PL        + GT + F P
Sbjct: 60  GGLHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGDT-ERTGTTVRFWP 118

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V    S ++E  +K      + F + GG++ 
Sbjct: 119 SAQTFTN-IEFHYDILAKRLRELSFLNSGVSIKLSDEREEDKK------DHFMYEGGIQA 171

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++     N++ I  ++F    E++     +VE A+ W +     I  + N I   +GGTH
Sbjct: 172 FVTHLNRNKTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTH 229

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  Y +      K   +   DD       ++SV + +P+F+ QTK KLV
Sbjct: 230 LAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 289

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE+A+ +    +L +NP EA  +   +I+        R+ +    RK A+   
Sbjct: 290 SSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLA 349

Query: 448 RLPGKLADCSQNIAHGTELFIVEG 471
            LPGKLADC +     +EL+IVEG
Sbjct: 350 GLPGKLADCQEKDPALSELYIVEG 373


>gi|33187291|gb|AAP97508.1| DNA gyrase subunit B [Campylobacter lari]
          Length = 404

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 166/418 (39%), Positives = 232/418 (55%), Gaps = 18/418 (4%)

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFD  TY++SGGLHGVG+SVVNALS +L  TV R   I+ Q+FS G   S  E
Sbjct: 1   TVLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVHRDGEIYRQEFSEGKVTSDFE 60

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
                  K GT I F PD +IF     FD   L K  +  AYL+ ++   +  ++     
Sbjct: 61  TIG-TSKKTGTIIEFWPDDQIFEITN-FDYEILAKRFRELAYLNPKITINFKDNR----- 113

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE 314
             I + E F+F GG+  ++     N+    ++      +++      VE A+ + +   E
Sbjct: 114 --IGKAESFHFEGGISQFVT--DLNKKQALTKAIFFNVDEEDV---NVEVALLYNDSYSE 166

Query: 315 IT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
              S+ N I T +GGTHE+G R+ LTR I  Y E      ++   I  +D+    + ++S
Sbjct: 167 NLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEANASAREKDSKITGEDVREGLIAVVS 226

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V + EP+F GQTK KL S   +  V  A  +    Y  +NPIEA  ++   +  +  R  
Sbjct: 227 VKVPEPQFEGQTKGKLGSSYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREA 286

Query: 432 RRKQREVNRKTAIRKLRL-PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +K RE+ RK     +   PGKLADC       +E+++VEGDSAGGSAKQ R R+ QA+L
Sbjct: 287 AKKARELTRKKETSSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERTFQAIL 346

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           PLRGKILNV  A  +KI  ++QI +++ A GC    ++  E LRY K+IIMTDADVDG
Sbjct: 347 PLRGKILNVEKARLDKILKSEQIQNMITAFGCGIGDEFDIEKLRYHKIIIMTDADVDG 404


>gi|2905604|gb|AAC03527.1| gyrase subunit B [Shewanella oneidensis]
          Length = 418

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 157/423 (37%), Positives = 241/423 (56%), Gaps = 16/423 (3%)

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           II+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L +T+ R   +  Q ++ G+P +
Sbjct: 3   IIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLQLTIRRDGKVHEQFYTHGVPDA 62

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
           P+++        GT I F P  + F D   F    L K  +  ++L+  V      +++ 
Sbjct: 63  PIKEIGDATK-TGTEIRFWPSEQTFSD-VEFHFEILAKRVRELSFLNSGVGIRLVDERDN 120

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
                  + E F + GG+  ++     N++ ++ ++F    E+      TVE A+ W + 
Sbjct: 121 -------KNEFFKYEGGISAFVDYLNRNKTPVNKDVFHFMQERDD--GITVEVAMQWNDG 171

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVG 368
               I  + N I   +GGTH +G R ALTR +  Y E      K   +   DD       
Sbjct: 172 YQENIFCFTNNIPQRDGGTHLAGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLTA 231

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER-SE 427
           ++SV + +P+F+ QTK KLVS + +  VE  + +  + YL++NP +A  ++  +++    
Sbjct: 232 VISVKVPDPKFSSQTKDKLVSSEVKAAVEQTMGEKLNDYLLENPADAKLIVGKIVDAPRA 291

Query: 428 ERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
               R+ +    RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR NQ
Sbjct: 292 REAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQ 351

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADV 546
           A+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  +  RY  +IIMTDADV
Sbjct: 352 AILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKNRYHNIIIMTDADV 411

Query: 547 DGA 549
           DG+
Sbjct: 412 DGS 414


>gi|148470184|gb|ABQ66040.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 157/430 (36%), Positives = 237/430 (55%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGK D+++Y++SGGLHGVG+SVVNALS +LH+ + R   +  Q++  G P 
Sbjct: 1   EVIMTVLHAGGKLDDNSYKVSGGLHGVGVSVVNALSSKLHLIINRAGQVHEQEYHHGDPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            PL    +  +  GT + F P  ++   +  F+   L +  +  ++L+  V+     ++ 
Sbjct: 61  YPLRVIGET-DSSGTTVRFWPS-ELTFSQTIFNVEILARRLRELSFLNAGVRIVLRDERI 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E         + + GGL  +++   E ++ ++         + G     VE A+ W E
Sbjct: 119 NLE-------HVYDYEGGLSEFVKYINEGKTHLNEIFHFTADTENGI---GVEVALQWNE 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTRG+ +Y E      K  +++  DD      
Sbjct: 169 SYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERS 426
            I+SV + +P+F+ QTK KLVS + +  VE A+   F  YL++NP  A  +   +I    
Sbjct: 229 AIISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAAR 288

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK+A+    LPGKLADC +     +EL+ VEGDSAGGSAKQ RNR  
Sbjct: 289 ARDAARKAREMTRRKSALDIAGLPGKLADCQEKDPALSELYQVEGDSAGGSAKQGRNRKM 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LP +GKI NV  A  +K  + Q++   + ALGC   R +Y  + LRY K+II TDAD
Sbjct: 349 QAILPWKGKIQNVERARFDKTISGQEVGTQITALGCGIGREEYNPDKLRYHKIIIKTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|148971295|gb|ABR20185.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 161/430 (37%), Positives = 242/430 (56%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD S+Y++SGGLHGVG+SVVNALSD+  +T+ R   +  Q++  G PL
Sbjct: 1   EVIMTVLHAGGKFDASSYKVSGGLHGVGVSVVNALSDQPQLTIHRDGKVHRQEYHLGTPL 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL        +RGT I F+P  +IF     F+   L K  +  ++L+  V+     ++E
Sbjct: 61  APLAVVGP-SEQRGTTIRFKPSAEIF-THIQFNYEILAKRLRELSFLNSGVRIELVDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                     + F   GGL+  ++    +R+ +   +   K++       T+E A+ W +
Sbjct: 119 N-------RSDVFQHEGGLQASVKYLNRSRTPVHDTVLWFKSQDGPV---TIEVALQWND 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                +  Y N I   +GGTH +G R ALTR +  Y E   +  K  ++   DD      
Sbjct: 169 SYQESMFCYTNNIPQKDGGTHLAGFRSALTRTLNDYIEKESSAKKDKLTTTGDDAREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERS 426
            ILSV + +P+F+ QTK KL S + +  VE A+      +L+++P +A  ++  ++    
Sbjct: 229 AILSVKLPDPKFSSQTKDKLGSSEVKGIVEAAVGTKLQDFLLEHPQDAKAIIAKMLEAAR 288

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +E+FIVEGDSAGGSAKQ R+R  
Sbjct: 289 AREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSEIFIVEGDSAGGSAKQGRDRRT 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  +  +K+  + ++  L+ ALGC   +  +    LRY +VIIMTDAD
Sbjct: 349 QAILPLKGKILNVEKSRFDKMLASAEVGTLITALGCGIGKDDFDIAKLRYHRVIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|301477626|dbj|BAJ12098.1| DNA gyrase subunit beta [Pandoraea sp. TA02]
          Length = 422

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 157/433 (36%), Positives = 240/433 (55%), Gaps = 27/433 (6%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK-----------V 199
           SGGLHGVG+S VNALS  L +TV R       +F +G+P +   +               
Sbjct: 1   SGGLHGVGVSCVNALSTYLKLTVRRDGKKHFMEFHQGVPQNRELEMVDGVETSPLKLLGD 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            +KRGT + F  D  IFG    +    L K  +  ++L+  V+   +  +   E      
Sbjct: 61  TDKRGTEVHFLADETIFGKV-EYHYDILAKRMRELSFLNNGVRIRLTDQRTGKEDD---- 115

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              F F GG+K +++   ++++++   +F    E+ G     VE A+ W +     +  +
Sbjct: 116 ---FAFGGGVKGFVEYINKSKTVLHPTVFHVMGERDGI---GVEVAMQWNDSYNETVLCF 169

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GG+H +GLR A+TR I KY   ++   K  +    DD+      +LSV + E
Sbjct: 170 TNNIPQRDGGSHLTGLRAAMTRVINKYIAESEIAKKAKVETTGDDMREGLTCVLSVKVPE 229

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F+ QTK KLVS + +  VE  +    + +L + P +A  +   ++E +  R   RK R
Sbjct: 230 PKFSSQTKDKLVSSEVRAPVEEYVAKALEDFLQETPNDAKIICTKIVEAARARDAARKAR 289

Query: 437 EVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E+ R+   +  + LPGKLADC +      E+++VEGDSAGGSAKQ R+R  QA+LPLRGK
Sbjct: 290 EMTRRKGVLDGVGLPGKLADCQEKDPALCEIYVVEGDSAGGSAKQGRDRKFQAILPLRGK 349

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           +LNV  A  +K+ +++QI+ L+ ALGC   +  Y  + LRY ++IIMTDADVDGAHI +L
Sbjct: 350 VLNVEKARFDKLISSEQIVTLITALGCGIGKDDYNIDKLRYHRIIIMTDADVDGAHIRTL 409

Query: 555 LLTFFYQEMYDLI 567
           LLTF Y+++ +LI
Sbjct: 410 LLTFLYRQVPELI 422


>gi|328349717|emb|CBY89166.1| GyrB protein [Flavobacterium sp. R-38388]
          Length = 427

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 168/433 (38%), Positives = 242/433 (55%), Gaps = 16/433 (3%)

Query: 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR-Q 176
           V+ H K    S LE+++T + AGGKFD  +Y++SGGLHGVG+SVVNALS  L  TV    
Sbjct: 1   VDIHKK-EGVSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSKHLRATVHSAD 59

Query: 177 NTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAY 236
             ++ Q++ RG  L P+++     +KRGT +TF PD  IF     F    L    +  ++
Sbjct: 60  GKVYEQEYERGKALYPVKQIG-TTDKRGTIVTFYPDDTIFTQTVDFTYDTLSARMRELSF 118

Query: 237 LSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG 296
           L+  +   ++  +E  +K G    E F+   GLK Y++    NR  I + + +  ++K  
Sbjct: 119 LNKGITITFTDKRE-VDKEGNFVSEIFHSTEGLKEYIRYLDANREPIINHVISMDSDK-- 175

Query: 297 THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KR 353
                VE A+ +       I SY N I T EGGTH  G R  LTR +KKYA+ +    K 
Sbjct: 176 -GEIPVEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGLLDKL 234

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
              I  DD       I+SV ++EP+F GQTKTKL + +    V  A+ D  + YL +NP 
Sbjct: 235 KFEISGDDFREGLTAIISVKVQEPQFEGQTKTKLGNREVVSPVSQAVGDMIEAYLEENPN 294

Query: 414 EATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
           +A  +++ VI  ++ R   +K RE+  RKT +    LPGKL+DCS+      E+F+VEGD
Sbjct: 295 DAKIIVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVFLVEGD 354

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE- 531
           SAGG+AKQ R+R  QA+LPLRGKILNV  A   K+  N++I ++  ALG    ++   + 
Sbjct: 355 SAGGTAKQGRDRMFQAILPLRGKILNVEKAMQHKVFENEEIRNIFTALGVTIGTEEDSKA 414

Query: 532 ----DLRYEKVII 540
                LRY KV+I
Sbjct: 415 LNLSKLRYHKVVI 427


>gi|148971439|gb|ABR20257.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 424

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 153/431 (35%), Positives = 236/431 (54%), Gaps = 13/431 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKF+  TY++SGGLHGVG+S VNALS  L V V +    ++  F+RG  +
Sbjct: 1   EVIMTVLHAGGKFNKDTYKVSGGLHGVGVSCVNALSKALDVNVCKGGHEYTISFARGKVV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL+K  + +  RGT ++F PD +IF     +D   +    +  A+L+  ++  +  ++ 
Sbjct: 61  APLKKLGESKK-RGTTVSFIPDEQIFSV-TTYDYETIYNRLRELAFLNKGLEIIFKDERN 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWC 309
                 +     F   GG+ +++Q   E ++ +  +    K  K+        E A+ W 
Sbjct: 119 TDHAEAV-----FNAEGGIVSFVQFLNETKTPLFQDPIYIKGTKELHDGTLEFEVAMQWN 173

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISA 366
           E     + SY N I T +GGTH +G   ALTR +  Y +     +        DD+    
Sbjct: 174 ETYTETVFSYVNNIATRQGGTHLTGFSTALTRVLNSYIKNHNLLKNAKTPITGDDVREGM 233

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             I+S  + +P+F GQTK KL + D     +  + + F  YL ++P  A  +++     +
Sbjct: 234 AAIISAKVPDPQFEGQTKQKLGNGDVGSAAQQIVGEEFATYLEEHPSIAKIIVDKAALAA 293

Query: 427 EERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
           + R   RK RE+ ++ + +   RLPGKL DCS+      E++IVEGDSAGGSAK  R+R 
Sbjct: 294 QAREAARKARELTQRKSVLDSARLPGKLTDCSERDPAKCEIYIVEGDSAGGSAKGGRDRR 353

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDA 544
            QA+LP+RGKILNV  +  +K+  N ++  ++ A GC         E LRY K+I+MTDA
Sbjct: 354 FQAILPIRGKILNVEKSRLQKVLQNTEVGSMISAFGCGIGKDGFNLEKLRYHKIILMTDA 413

Query: 545 DVDGAHIASLL 555
           DVDG+HI +LL
Sbjct: 414 DVDGSHIRTLL 424


>gi|269799110|gb|ACZ43833.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 372

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 127/383 (33%), Positives = 208/383 (54%), Gaps = 16/383 (4%)

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
           +AG+   + V++  +G ++V D+GRGIPV+ H +    S  E+ILT LHAGGKFD+++Y+
Sbjct: 1   LAGHCTDVVVTIHEDGSVSVSDDGRGIPVDIHEE-EGVSAAEVILTVLHAGGKFDDNSYK 59

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS++L +T+ R   I  Q +  G P +P+     + +  GT + F
Sbjct: 60  VSGGLHGVGVSVVNALSEKLELTIHRHGHIHQQIYRHGEPQAPIAVIGDI-DTTGTELRF 118

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F +   F    L K  +  ++L+  V      ++E        + + F + GG+
Sbjct: 119 WPSHETFTNTL-FHYDILAKRLRELSFLNSGVSIKLIDERED------GKSDHFVYEGGI 171

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K ++     N++ I+ + F    E++     TVE A+ W +     I  + N I   +GG
Sbjct: 172 KAFVDYLNVNKTPINKDAFHFSVERED--GITVEVAMQWNDGFQEGIYCFTNNIPQRDGG 229

Query: 329 THESGLRVALTRGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           TH +G R ALTR +  Y E     +  ++ +   DD       ++SV + +P+F+ QTK 
Sbjct: 230 THLAGFRGALTRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKD 289

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLRRRKQREVNRKTAI 444
           KLVS + +  VE A+ +    YL++NP EA+ ++  +I+ S      R+ +    RK A+
Sbjct: 290 KLVSSEVKSAVEQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKAREMTRRKGAL 349

Query: 445 RKLRLPGKLADCSQNIAHGTELF 467
               LPGKLADC +     +EL+
Sbjct: 350 DLAGLPGKLADCQEKDPALSELY 372


>gi|183987586|gb|ACC65783.1| topoisomerase II [Pleurotus nebrodensis]
          Length = 534

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 115/547 (21%), Positives = 216/547 (39%), Gaps = 39/547 (7%)

Query: 154 LHGVGISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEK-VRNKRGTRITFR 210
            HG G  + N  S E  +  A       +SQ +++ +      K     RN+  TR+TF+
Sbjct: 1   RHGYGAKLANIYSLEFTIETADKVNGKKYSQTWTKNMTQVGKAKITNNSRNEEYTRVTFK 60

Query: 211 PDPKIFGDKAGFDAA--RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP-EKEEFYFPG 267
           P+   FG           L K     A     VK   + ++   + +    E        
Sbjct: 61  PELTRFGMTDIDPDTAGLLRKRVYDMAGTVKDVKVYLNNERLKIKTFKQYVEMYIEAATA 120

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEG 327
           G K       + +  +  E  +             E A A  +   +  S+ N+I T +G
Sbjct: 121 GAKENFGGGAQAKPTVIYEQIS----------PRWEVAFATSDGTFQQVSFANSISTIKG 170

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           GTH + +   L++ I  +       +A ++    +       ++  I  P F  QTK  L
Sbjct: 171 GTHVNYIADQLSKSIIAHIAKKN--KAATVKPAQVKNHMWIFVNALIENPTFDSQTKETL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRK 446
                +     AL + F   + +     +  ++ V+  ++ +  ++ ++   +++  +  
Sbjct: 229 TLPAGKFGSRPALSEEFMKKVQK-----SSTIDQVLNWAKFKADQQIKKTDGSKRNRLTG 283

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAG 503
           +       +     A    L + EGDSA   A        R N  V PLRGK+LNV  A 
Sbjct: 284 MAKLSDANNAGTKNAEKCTLILTEGDSAKSLAVAGLAVVGRDNFGVFPLRGKLLNVREAR 343

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
            ++I  +++I ++ + +G +   +Y     LRY +++IMTD D DG+HI  LL+ F    
Sbjct: 344 HDQIMKSEEIQNIKKIMGLQHNKEYTNVSSLRYGRLMIMTDQDHDGSHIKGLLINFLDHF 403

Query: 563 MYDLIEQK-HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
              L++    L     P+ R+T+G +          +  LEE       K     +KGLG
Sbjct: 404 YPSLLKVPEFLVEFVTPIVRVTKGNQRKNFFTIPEYETWLEETPDS--KKWTAKYYKGLG 461

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE--RAS 679
               +  +E      K  +    +  +   L     + +K    KAD+R +++++    +
Sbjct: 462 TSSDADAREYFSQMGKHMIPFATMEDEERGL--IDLAFSK---KKADDRKEWLRQFKPGT 516

Query: 680 FID-DVG 685
           ++D ++ 
Sbjct: 517 YLDHNID 523


>gi|307939340|gb|ADN95861.1| DNA gyrase B [Hymenobacter algoricola]
          Length = 434

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 173/439 (39%), Positives = 249/439 (56%), Gaps = 21/439 (4%)

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           + +T L AGGKFD + Y+ SGGLHGVG+S VNALS   HVTV R   ++ Q++  G+PL 
Sbjct: 2   LXMTVLXAGGKFDKNXYKTSGGLHGVGVSCVNALSTHTHVTVERDGHVYEQEYHIGVPLY 61

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
            + +       RGTR+ F+PDP IF +   +   R+    +  AYL+  ++   +  +  
Sbjct: 62  DVREIGDSTG-RGTRVMFQPDPSIFDETLVYSYERIATRLRELAYLNRGIRIVLTDLRTP 120

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
           A+       E FY  GG+  Y+Q    +R+++ +      TE+       VE A  + + 
Sbjct: 121 ADGGEEQRDE-FYSQGGVAEYVQYLDNSRTVLMTRPVYVATER----GIPVEVAFQYNDS 175

Query: 312 NPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVG 368
             E   SY N I T EGGTH +G R A+TR +K YAE +    K  I I  DD       
Sbjct: 176 YQEHIFSYVNNINTHEGGTHVAGFRSAITRVLKAYAEKSGEVAKAKIEIQGDDFREGLTA 235

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           ++SV ++EP+F GQTK KL + +    V   + +  + YL +NP EA  ++E VI  ++ 
Sbjct: 236 VISVKVQEPKFEGQTKGKLGNSEVSGAVNQVVGEILNQYLEENPKEARIIVEKVILAAKA 295

Query: 429 RLRRRKQREVNRKTAIRKLRL-PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
           R+  RK RE+ ++ ++      PGKLADCS++     EL++VEGDSAGG+AKQ RNR+ Q
Sbjct: 296 RVAARKAREMVQRKSVLGSNSLPGKLADCSESDPALCELYLVEGDSAGGTAKQGRNRAFQ 355

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-----------EDLRYE 536
           A+LPLRGKILNV  A   +I  N++I +++ ALG     +  E           + LRY 
Sbjct: 356 AILPLRGKILNVEKAQEHRIYENEEIRNMITALGVSFEKKTDEDDGSTTRSLNLDKLRYH 415

Query: 537 KVIIMTDADVDGAHIASLL 555
           KVIIMTDADV G+HI +LL
Sbjct: 416 KVIIMTDADVXGSHIRTLL 434


>gi|302148642|pdb|2XCS|B Chain B, The 2.1a Crystal Structure Of S. Aureus Gyrase Complex
           With Gsk299423 And Dna
 gi|302148643|pdb|2XCS|D Chain D, The 2.1a Crystal Structure Of S. Aureus Gyrase Complex
           With Gsk299423 And Dna
 gi|304445659|pdb|2XCT|B Chain B, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex
           With Ciprofloxacin And Dna
 gi|304445660|pdb|2XCT|D Chain D, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex
           With Ciprofloxacin And Dna
 gi|304445665|pdb|2XCT|S Chain S, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex
           With Ciprofloxacin And Dna
 gi|304445666|pdb|2XCT|U Chain U, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex
           With Ciprofloxacin And Dna
          Length = 692

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 93/242 (38%), Positives = 127/242 (52%), Gaps = 41/242 (16%)

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADCS       E+F+VEGDSAGGS K  R+   QA+LPLRGKILNV  A 
Sbjct: 1   MDVASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKAR 60

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            ++I NN +I  ++ A G      +     RY K++IMTDADVDGAHI +LLLTFFY+ M
Sbjct: 61  LDRILNNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFM 120

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
             LIE  ++++  PP      G                               +KGLGEM
Sbjct: 121 RPLIEAGYVYIAQPP-----TG-------------------------------YKGLGEM 144

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
            A QL ET M+   R LL+V++   +    +   +   LMG   + R +FI++ A +  +
Sbjct: 145 NADQLWETTMNPEHRALLQVKLEDAI----EADQTFEMLMGDVVENRRQFIEDNAVYA-N 199

Query: 684 VG 685
           + 
Sbjct: 200 LD 201


>gi|17367214|sp|Q9X3Y3|GYRB_BACCE RecName: Full=DNA gyrase subunit B
 gi|4588022|gb|AAD25955.1|AF090330_1 gyrase B subunit [Bacillus cereus]
          Length = 404

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 160/414 (38%), Positives = 234/414 (56%), Gaps = 14/414 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKFD   Y++SGGLHGVG SVVNALS EL V V R+  I  QK+ RGIP++ L+   
Sbjct: 1   HAGGKFDGGGYKVSGGLHGVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
              ++ GT   F+PDP+IF +   +D   L    +  A+L+  +K      +E  +K   
Sbjct: 61  DT-DQTGTITRFKPDPEIFQETTVYDFDTLATRMRELAFLNRNIKLTIEDKRERKQK--- 116

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-T 316
              +EF++ GG+K+Y++    ++  I  E    +  K G     VE ++ + E       
Sbjct: 117 ---KEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIY 170

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFI 374
           S+ N I T EGGTHE G + ALTR I  Y       +    ++  +D+      I+S+  
Sbjct: 171 SFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKH 230

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRR 433
             P+F GQTKTKL + +A+   E+   + F+ +L++NP  A K++E   +        ++
Sbjct: 231 PNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKK 290

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            +    RK+A+    LPGKLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+
Sbjct: 291 ARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLK 350

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVD 547
           GKI+NV  A  +KI +N ++  ++ A+G      +  E  RY KVIIMTDADVD
Sbjct: 351 GKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVD 404


>gi|269799104|gb|ACZ43830.1| DNA gyrase subunit B [Moritella viscosa]
 gi|269799112|gb|ACZ43834.1| DNA gyrase subunit B [Moritella viscosa]
 gi|269799114|gb|ACZ43835.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 373

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 129/384 (33%), Positives = 209/384 (54%), Gaps = 16/384 (4%)

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AG+   + V++  +G ++V D+GRGIPV+ H +    S  E+ILT LHAGGKFD+++Y++
Sbjct: 1   AGHCTDVVVTIHEDGSVSVSDDGRGIPVDIHEE-EGVSAAEVILTVLHAGGKFDDNSYKV 59

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS++L +T+ R   I  Q +  G P +P+     + +  GT + F 
Sbjct: 60  SGGLHGVGVSVVNALSEKLELTIHRHGHIHQQIYRHGEPQAPIAVIGDI-DTTGTELRFW 118

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F    L K  +  ++L+  V      ++E        + + F + GG+K
Sbjct: 119 PSHETFTNTL-FHYDILAKRLRELSFLNSGVSIKLIDERED------GKSDHFVYEGGIK 171

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            ++     N++ I+ + F    E++     TVE A+ W +     I  + N I   +GGT
Sbjct: 172 AFVDYLNVNKTPINKDAFHFSVERED--GITVEVAMQWNDGFQEGIYCFTNNIPQRDGGT 229

Query: 330 HESGLRVALTRGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           H +G R ALTR +  Y E     +  ++ +   DD       ++SV + +P+F+ QTK K
Sbjct: 230 HLAGFRGALTRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDK 289

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLRRRKQREVNRKTAIR 445
           LVS + +  VE A+ +    YL++NP EA+ ++  +I+ S      R+ +    RK A+ 
Sbjct: 290 LVSSEVKSAVEQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKAREMTRRKGALD 349

Query: 446 KLRLPGKLADCSQNIAHGTELFIV 469
              LPGKLADC +     +EL+IV
Sbjct: 350 LAGLPGKLADCQEKDPALSELYIV 373


>gi|29652861|gb|AAO87400.1| DNA gyrase B [Listeria monocytogenes]
          Length = 205

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 90/201 (44%), Positives = 123/201 (61%), Gaps = 2/201 (0%)

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 7   RKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILN 66

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 67  VEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTL 126

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+K
Sbjct: 127 FYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYK 184

Query: 619 GLGEMLASQLKETAMDANKRT 639
           GLGEM   QL +T M+   RT
Sbjct: 185 GLGEMNPEQLWDTTMNPEHRT 205


>gi|148971389|gb|ABR20232.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 167/430 (38%), Positives = 241/430 (56%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y+IS GLHGVG+SVVNALS  L +T+ R       +F  G  +
Sbjct: 1   EVIMTVLHAGGKFDSNSYKISVGLHGVGVSVVNALSTWLKLTIYRDGKRHFMEFREGDAV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL         RGT I F P P  FG    F    L +  +  ++L+  V       + 
Sbjct: 61  APLAVVGDSPK-RGTEIHFLPSPLTFGT-IEFHYDILARRLRELSFLNNGVSIFLKDLRH 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       E F F GG++ +++     R+++   +F    EK+G    TVE A+ W E
Sbjct: 119 GQE-------ENFSFSGGVRGFVEYLNRTRTVLHPTVFHSVGEKEGI---TVEVAMQWNE 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGT  + LR A+TR +  + E  +   K  +    DD+     
Sbjct: 169 SYQENVLCFTNNIPQRDGGTLLTALRAAMTRTLNHFIEENELARKAKVETTGDDMREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE  + D    +L++ P EA  ++  +IE + 
Sbjct: 229 CVLSVKVPDPKFSSQTKEKLVSSEVRPAVEEVVSDQMRSFLLEKPAEARIIVGKIIEAAR 288

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK RE   RK A+  L LPGKLADC +      E+++VEGDSAGGSAKQ R+R  
Sbjct: 289 AREAARKARELTRRKGALDGLGLPGKLADCQEKDPAQCEIYLVEGDSAGGSAKQGRDRRF 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q+I+ L+ ALG          E +RY ++IIMTDAD
Sbjct: 349 QAILPLKGKILNVERARFDKLVSSQEIVTLITALGTGIGKDEYSPEKVRYHRIIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|119369938|gb|ABL67983.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 419

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 166/431 (38%), Positives = 241/431 (55%), Gaps = 18/431 (4%)

Query: 131 EIILTTLHAG-GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
           E+I+T LH   GKFD S+Y++SGGLHGVG+SVVNALSD L +T+ R   +  Q++  G P
Sbjct: 1   EVIMTVLHGRRGKFDASSYKVSGGLHGVGVSVVNALSDYLLLTIHRDGKVHRQEYHLGDP 60

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            +PL    +   +RGT I F+P  +IF     F    L K  +  ++L+  V+     ++
Sbjct: 61  AAPLAVVGESA-QRGTTIRFKPSAQIFT-HIQFSYEILAKRLRELSFLNSGVRIELIDER 118

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
           E          + F   GGLK ++      R+ I   +   K+++      TVE A+ W 
Sbjct: 119 EN-------RSDVFQHEGGLKAFVTYLNRARTPIHDSVMWFKSQEGPV---TVEVAMQWN 168

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISA 366
           +     +  Y N I   +GGTH +G R ALTR +  Y E   +  K  +    DD     
Sbjct: 169 DSYQESMFCYTNNIPQKDGGTHLAGFRSALTRMLNDYIEKELSGKKDKVPTTGDDAREGL 228

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             ILSV + +P+F+ QTK KLVS + +  VE A+      +L+++P EA  ++  +IE +
Sbjct: 229 TAILSVKLPDPKFSSQTKDKLVSSEVKGIVEAAVGPKLQDFLLEHPQEAKSIVAKIIEAA 288

Query: 427 EERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
             R   RK R    RK A+    LPGKLADC +     +E+FIVEGDSAGGSAKQ R+R 
Sbjct: 289 HAREAARKAREMTRRKGALDVAGLPGKLADCQEKDPALSEIFIVEGDSAGGSAKQGRDRR 348

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDA 544
            QA+LPL+GKILNV  A  +K+ ++ ++  L+ ALGC       +   LRY ++I++ DA
Sbjct: 349 TQAILPLKGKILNVEKARFDKMLSSAEVGTLITALGCGIGKDDFDLTKLRYHRIILLADA 408

Query: 545 DVDGAHIASLL 555
           DVDG+HI +LL
Sbjct: 409 DVDGSHIRTLL 419


>gi|295979549|dbj|BAJ07447.1| DNA gyrase subunit B [Brevundimonas diminuta]
 gi|295979553|dbj|BAJ07449.1| DNA gyrase subunit B [Brevundimonas diminuta]
          Length = 313

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 107/323 (33%), Positives = 169/323 (52%), Gaps = 21/323 (6%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DNA+DE +AG+A+L+ V+L+ +G +TV DNGRGIP   H +   
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHADLVTVTLNEDGSVTVTDNGRGIPTAIHAE-EG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALSD L + + R     S +F R
Sbjct: 60  ISAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLELVIYRDGKKHSVRFER 119

Query: 187 GIPLSPLEKKEKV-------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
           G  +  L             R   GT +TF P    F     FD   L    +  A+L+ 
Sbjct: 120 GETVRSLAVVGDAPMREDKGRLLTGTEVTFFPSVTTF-SHIDFDLKTLEHRLRELAFLNS 178

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            V    S  +        P +   ++ GG++ +++   ++++ I  ++   + +K G   
Sbjct: 179 GVVIKLSDHR-----GAEPIEIMLHYEGGVEAFVRHLDKSKTPILKDVIVIRGQKDGI-- 231

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
             ++ A+ W +     +  + N I   +GGTH S  R +LTR +  Y E +    K  ++
Sbjct: 232 -ELDLALWWNDSYHETMLCFTNNIPQRDGGTHLSAFRASLTRVMGSYIESSGLAKKEKVA 290

Query: 357 IISDDLMISAVGILSVFIREPEF 379
              +D       +LSV + +P+F
Sbjct: 291 PTGEDAREGLTCVLSVKVPDPKF 313


>gi|312271584|gb|ADQ56147.1| DNA gyrase subunit B [Vibrio sp. SA0606-03S]
 gi|312271586|gb|ADQ56148.1| DNA gyrase subunit B [Vibrio sp. SA0606-63]
          Length = 373

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 130/384 (33%), Positives = 209/384 (54%), Gaps = 15/384 (3%)

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+   I V++  +  ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++S
Sbjct: 1   GHCKDIVVTIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVS 59

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K GT+I F P
Sbjct: 60  GGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKTGTQIRFWP 118

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++E        +++ F + GG++ 
Sbjct: 119 SAETFSN-TEFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KQDHFMYEGGIQA 171

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++Q    N++ I  +IF    E++     +VE A+ W +     I  + N I   +GGTH
Sbjct: 172 FVQHLNTNKTPIIEKIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNNIPQRDGGTH 229

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QTK KLV
Sbjct: 230 LAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 289

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE+A+ +    +LV+NP EA  +   +I+        R+ +    RK A+   
Sbjct: 290 SSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLA 349

Query: 448 RLPGKLADCSQNIAHGTELFIVEG 471
            LPGKLADC +     +EL+IVEG
Sbjct: 350 GLPGKLADCQEKDPALSELYIVEG 373


>gi|295099695|emb|CBK88784.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Eubacterium cylindroides T2-87]
          Length = 186

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 79/160 (49%), Positives = 109/160 (68%), Gaps = 2/160 (1%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y A  I++LEGLE VRMRPGMYIG T  + LHHL  E++DN +DE +AG+A+ I+V+++
Sbjct: 25  SYTADDIQVLEGLEAVRMRPGMYIGSTSSRGLHHLVWEIVDNGIDEALAGFASQIDVTIE 84

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +  + V DNGRG+PV  H K    S +E I+T LHAGGKF    Y++SGGLHGVG SVV
Sbjct: 85  KDDIIAVRDNGRGMPVGIHEK-TGISAVETIMTVLHAGGKFGGGAYKVSGGLHGVGASVV 143

Query: 163 NALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRN 201
           NALS+ L VTV +   I+  +F   G  ++PL+   + + 
Sbjct: 144 NALSEWLEVTVYQDGKIYFIRFENGGNTVAPLKIIGQTKK 183


>gi|119369996|gb|ABL68012.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 161/430 (37%), Positives = 240/430 (55%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LH G KF  S+Y++SGGLHGVG+SVVNALSD L + + R   +  Q++  G PL
Sbjct: 1   EVIMTVLHGGRKFGASSYKVSGGLHGVGVSVVNALSDYLLLIIHRDGKVHRQEYRLGDPL 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL        +RGT I F+P  +IF     F+   L K  +  ++L+  V+     ++E
Sbjct: 61  APLAPVGP-SEQRGTTIRFKPSAQIF-THIQFNHDILAKRLRELSFLNSGVRIELIDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                     + F   GGL+ +++    +R+ +   I   KT+       T+E A+ W +
Sbjct: 119 NT-------SDVFQHEGGLQAFVKYLNRSRTPVHESIPWFKTQDGPV---TIEVALQWND 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMISAV 367
                +  Y N I   +GGTH +G R ALTR +  Y   E++  K  +    DD      
Sbjct: 169 SYQESMFCYTNNIPQKDGGTHLAGFRSALTRTLNDYIEKEMSAKKDKVPTTGDDAREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERS 426
            ILSV + +P+F+ QTK KLVS + +  VE A+      +L+++P +A  ++  ++    
Sbjct: 229 AILSVKLPDPKFSSQTKDKLVSSEVKGIVEAAVSAKLQDFLLEHPQDAKAIIAKMLEAAR 288

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +E+FIVEGDSAGGSAKQ R+R  
Sbjct: 289 AREAARKAREMTRRKGALDIAGLPGKLADCLEKDPALSEIFIVEGDSAGGSAKQGRDRRT 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++ ++  L+ ALGC       +   LRY +VII+TDAD
Sbjct: 349 QAILPLKGKILNVEKARFDKMLSSAEVGTLITALGCGIGKDDFDLAKLRYHRVIIITDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|163256309|dbj|BAF95665.1| DNA gyrase subunit B [Bradyrhizobium sp. KO3E]
          Length = 286

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 106/291 (36%), Positives = 160/291 (54%), Gaps = 11/291 (3%)

Query: 76  HLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILT 135
           H+  EV+DNA+DE +AG+A  ++V L+ +  +TV D+GRGIPV+ H K    S  E+I+T
Sbjct: 1   HMVYEVVDNAIDEALAGHATRVDVVLNADNSVTVRDDGRGIPVDIH-KGEGISAAEVIMT 59

Query: 136 TLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK 195
            LHAGGKFD ++Y++SGGLHGVG+SVVNALS +L + + R +     +F+ G  ++PL+ 
Sbjct: 60  QLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHGDAVAPLKV 119

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
                 +RGT +TF   P+ F +   +D A L    +  A+L+  V    S  +   EK 
Sbjct: 120 VGDAPGRRGTEVTFLASPETFKN-IEYDFATLEHRLRELAFLNSGVNIILSDMRHAVEKR 178

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI 315
                EE ++ GG++ +++    N+  I       + E  G     VE A+ W +   E 
Sbjct: 179 -----EEMHYSGGVEEFVKYLDRNKKAIVPAPIMVRAEANGI---GVEAALWWNDSYHEN 230

Query: 316 -TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
              + N I   +GGTH +G R ALTR +  YAE    K  I++  DD    
Sbjct: 231 VLCFTNNIPQRDGGTHLAGFRGALTRQVNGYAEANAKKEKIALTGDDCREG 281


>gi|29652785|gb|AAO87362.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652813|gb|AAO87376.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652815|gb|AAO87377.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652978|gb|AAO87458.1| DNA gyrase B [Listeria monocytogenes]
          Length = 207

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 90/208 (43%), Positives = 125/208 (60%), Gaps = 2/208 (0%)

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +R +    + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+L
Sbjct: 2   AKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAIL 61

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           P+RGKILNV  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAH
Sbjct: 62  PIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAH 121

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           I +LLLT FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  
Sbjct: 122 IRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDT 179

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKR 638
           K  I R+KGLGEM   QL +T M+   R
Sbjct: 180 KYSIQRYKGLGEMNPEQLWDTTMNPEHR 207


>gi|315273173|ref|ZP_07869217.1| DNA gyrase subunit B [Listeria marthii FSL S4-120]
 gi|313616200|gb|EFR89281.1| DNA gyrase subunit B [Listeria marthii FSL S4-120]
          Length = 161

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 62/166 (37%), Positives = 93/166 (56%), Gaps = 6/166 (3%)

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           +G      +     RY K+IIMTDADVDGAHI +LLLT FY+ M  L++  ++++  PPL
Sbjct: 1   MGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGYIYIAQPPL 60

Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639
           ++I  G +  Y + +   +  L      G  K  I R+KGLGEM   QL ET M+   RT
Sbjct: 61  YQIKHGKQVEYVYSDGQLEDYLASL--DGDTKYSIQRYKGLGEMNPEQLWETTMNPEHRT 118

Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           LL+V I   +    D  ++   LMG + + R KFI++ A ++ ++ 
Sbjct: 119 LLQVNIKDAI----DADETFEMLMGDRVEPRRKFIEDNAQYVKNLD 160


>gi|119369970|gb|ABL67999.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 164/430 (38%), Positives = 242/430 (56%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD S+Y++SGGLHGVG+SVVNALSD L + + R   +  Q++  G PL
Sbjct: 1   EVIMTVLHAGGKFDASSYKVSGGLHGVGVSVVNALSDYLLLIIHRDGKVHRQEYRLGDPL 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL        +RGT I F+P  +IF     F+   L K  +  ++L+  V      ++E
Sbjct: 61  APLAPVGP-SEQRGTTIRFKPSAQIF-THIQFNHDILAKRLRELSFLNSGVGIELIDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                     + F   GGL+ +++    +R+ +   I   KT+       T+E A+ W +
Sbjct: 119 NT-------SDVFPHEGGLQAFVKYLNRSRTPVHESIPRFKTQDGPV---TIEVALQWND 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMISAV 367
                +  Y N I   +GGTH +G R ALTR +  Y   E++  K  +    DD      
Sbjct: 169 SYQESMFCYTNNIPQKDGGTHLAGFRSALTRTLNDYIEKEMSAKKDKVPTTGDDAREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERS 426
            ILSV + +P+F+ QTK KLVS + +  VE A+      +L+++P +A  ++  ++    
Sbjct: 229 AILSVKLPDPKFSSQTKDKLVSSEVKGIVEAAVSAKLQDFLLEHPQDAKAIIAKMLEAAR 288

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +E+FIVEGDSAGGSAKQ R+R  
Sbjct: 289 AREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSEIFIVEGDSAGGSAKQGRDRRT 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++ ++  L+ ALGC       +   LRY +VII+TDAD
Sbjct: 349 QAILPLKGKILNVEKARFDKMLSSAEVGTLITALGCGIGKDDFDLAKLRYHRVIIITDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|328349771|emb|CBY89193.1| GyrB protein [Flavobacterium sp. R-40838]
          Length = 430

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 169/435 (38%), Positives = 242/435 (55%), Gaps = 16/435 (3%)

Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA-RQNT 178
            H K    S L++++T + AGGKFD  +Y++SGGLHGVG+SVVNALS+ L  TV      
Sbjct: 1   IHKK-EGVSALQVVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGK 59

Query: 179 IFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLS 238
           ++ Q++ +G  L P++   +    RGT +TF PDP IF     +    L    +  +YL+
Sbjct: 60  VYEQEYEKGKALYPVKVIGETSK-RGTIVTFYPDPSIFTQTVDYSYDTLSARMRELSYLN 118

Query: 239 GRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH 298
             +   ++  +E  +K G    E F+   GLK Y++    NR  I + + +  +EK    
Sbjct: 119 KGITITFTDKRE-VDKDGNFVSEIFHSTEGLKEYIRYLDGNREPIIAHVISMDSEK---G 174

Query: 299 RGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAI 355
              VE A+ +       I SY N I T EGGTH  G R  LTR +KKYA+ +    K   
Sbjct: 175 EIPVEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADSSGMLDKLKF 234

Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415
            I  DD       I+SV + EP+F GQTKTKL + +    V  A+ D  + YL +NP +A
Sbjct: 235 DISGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVVSPVSQAVGDMIEAYLEENPNDA 294

Query: 416 TKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSA 474
             +++ VI  ++ R   +K RE+  RKT +    LPGKL+DCS+      E+++VEGDSA
Sbjct: 295 RIIVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGDSA 354

Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY-----R 529
           GG+AKQ R+R+ QA+LPLRGKILNV  A   K+  N++I ++  ALG    ++       
Sbjct: 355 GGTAKQGRDRAFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTIGTEEDSKALN 414

Query: 530 EEDLRYEKVIIMTDA 544
              LRY KVIIM DA
Sbjct: 415 ISKLRYHKVIIMCDA 429


>gi|198250527|gb|ACH85245.1| DNA gyrase subunit B [Paenibacillus validus]
          Length = 403

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 161/413 (38%), Positives = 232/413 (56%), Gaps = 15/413 (3%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKF    Y++SGGLHGVG+SVVNALS +L V V R+  I+ Q++ RG+P   L+   + 
Sbjct: 2   GGKFGGEGYKVSGGLHGVGVSVVNALSKKLVVQVKREGIIYEQEYHRGVPQQDLQVIGET 61

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
               GT++TF PD +IF +   FD   L    +  A+L+  ++     ++          
Sbjct: 62  SE-SGTQVTFWPDEEIFTETREFDFDTLQSRIRELAFLNRGIEIILRDER-------TDV 113

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              F + GG+ ++++     R  +       + +K   H   VE A+ + +     I S+
Sbjct: 114 SHTFKYEGGIISFVEYLNRTREALHQPPIFVEGDKDNIH---VEVALQYNDSYSENIYSF 170

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I T EGGTHESG + ALTR +  YA       +   ++  DD+      I+SV I E
Sbjct: 171 ANNINTHEGGTHESGFKSALTRILNDYARKNNAIKESDANLSGDDVREGLTAIISVKIPE 230

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F GQTKTKL + + +  VE+   + F  ++ +NP  A K++E  ++    R   RK R
Sbjct: 231 PQFEGQTKTKLGNSEVRGIVESLFAEKFQEFMDENPAIAKKIVEKGLQAQRAREAARKAR 290

Query: 437 EVNR-KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E+ R K+A+    LPGKLADCS   A  +E++IVEGDSAGGSAKQ R+R  QA+LPLRGK
Sbjct: 291 ELTRWKSALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLRGK 350

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           ILNV  +  +KI +N +I  ++ ALG      +     RY K+IIMTDADVDG
Sbjct: 351 ILNVEKSRLDKILSNAEIRAIITALGTGIGDDFDIAKARYHKIIIMTDADVDG 403


>gi|295979557|dbj|BAJ07451.1| DNA gyrase subunit B [Brevundimonas diminuta]
          Length = 313

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 107/323 (33%), Positives = 171/323 (52%), Gaps = 21/323 (6%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DNA+DE +AG+A+L+ V+L+ +G +TV DNGRGIP   H +   
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHADLVTVTLNEDGSVTVTDNGRGIPTAIHAE-EG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALSD L + V R+    + +F R
Sbjct: 60  ISAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLELVVYREGKKHTVRFER 119

Query: 187 GIPLSPLEKKEKV-------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
           G  +  L    +        R   GT +TF P    F     FD   L    +  A+L+ 
Sbjct: 120 GETVRSLAVVGEAPMREDKGRLLTGTEVTFYPSVTTF-SHIDFDLKTLEHRLRELAFLNS 178

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            V    S  +        P +   ++ GG++ +++   ++++ I  ++   + +K G   
Sbjct: 179 GVVIKLSDHR-----GAEPVEIMLHYEGGVEAFVRHLDKSKTPILKDVIVIRGQKDGI-- 231

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
             ++ A+ W +     +  + N I   +GGTH S  R +LTR +  Y E +    K  ++
Sbjct: 232 -ELDLALWWNDSYHETMLCFTNNIPQRDGGTHLSAFRASLTRVMGSYIESSGLAKKEKVA 290

Query: 357 IISDDLMISAVGILSVFIREPEF 379
              +D       +LSV + +P+F
Sbjct: 291 PTGEDAREGLTCVLSVKVPDPKF 313


>gi|4588025|gb|AAD25958.1|AF090333_1 gyrase B subunit [Bacillus anthracis]
          Length = 404

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 158/414 (38%), Positives = 234/414 (56%), Gaps = 14/414 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKFD   Y++SGGLHGVG SVVNALS EL V V R+  I  QK+ RGIP++ L+   
Sbjct: 1   HAGGKFDGGGYKVSGGLHGVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
              ++ GT   F+PDP+IF +   ++   L    +  A+L+  +K      +E  +K   
Sbjct: 61  DT-DQTGTITRFKPDPEIFQETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK--- 116

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-T 316
              +EF+  GG+K+Y++    ++  I  E    +  K G     VE ++ + E       
Sbjct: 117 ---KEFHCEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIY 170

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFI 374
           S+ N I T EGGTHE G + ALTR I  Y       +    ++  +D+      I+S+  
Sbjct: 171 SFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKH 230

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRR 433
            +P+F GQTKTKL + +A+   E+   + F+ +L++NP  A K++E   +        ++
Sbjct: 231 PDPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKK 290

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            +    RK+A+    LPG+LADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+
Sbjct: 291 ARELTRRKSALEVSSLPGRLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLK 350

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVD 547
           GKI+NV  A  +KI +N ++  ++ A+G      +  E  RY KVIIMTDADVD
Sbjct: 351 GKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVD 404


>gi|29652699|gb|AAO87319.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652865|gb|AAO87402.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652920|gb|AAO87429.1| DNA gyrase B [Listeria monocytogenes]
 gi|29653008|gb|AAO87473.1| DNA gyrase B [Listeria monocytogenes]
          Length = 206

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 90/208 (43%), Positives = 125/208 (60%), Gaps = 2/208 (0%)

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +R +    + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+L
Sbjct: 1   AKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAIL 60

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           P+RGKILNV  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAH
Sbjct: 61  PIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAH 120

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           I +LLLT FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  
Sbjct: 121 IRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDT 178

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKR 638
           K  I R+KGLGEM   QL +T M+   R
Sbjct: 179 KYSIQRYKGLGEMNPEQLWDTTMNPEHR 206


>gi|806906|gb|AAC43990.1| PAR-E [Mycoplasma genitalium]
          Length = 228

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 94/236 (39%), Positives = 138/236 (58%), Gaps = 13/236 (5%)

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK-IRNN 510
           KLA C        ELFIVEGDSAGG+AK  R+R  QA+LPLRGK+LNV    ++K    N
Sbjct: 2   KLAPCQTKKTSEKELFIVEGDSAGGTAKMGRDRIFQAILPLRGKVLNVEKINNKKEAITN 61

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++I+ L+  +G    + +  +DL+Y K+IIMTDAD DGAHI  LLLTFFY+ M  LIE  
Sbjct: 62  EEILTLIFCIGTGILTNFNIKDLKYGKIIIMTDADNDGAHIQILLLTFFYRYMQPLIELG 121

Query: 571 HLFLISPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628
           H++L  PPL+++         Y   +   + +  +          + R+KGLGEM A QL
Sbjct: 122 HVYLALPPLYKLETKDRKTVKYLWSDLELESVKLKLNN-----FTLQRYKGLGEMNADQL 176

Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF-IDD 683
            +T M+   R L++V+++  +N+ K      N  MG K+D R  +I+   +F +++
Sbjct: 177 WDTTMNPTTRKLVQVKLDDLINAEKQI----NIFMGEKSDLRKHWIEANINFSVEN 228


>gi|110612689|gb|ABG78307.1| GyrB [uncultured bacterium]
 gi|110612691|gb|ABG78308.1| GyrB [uncultured bacterium]
          Length = 407

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 152/419 (36%), Positives = 231/419 (55%), Gaps = 17/419 (4%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           G+FD ++Y++SGGLHGVG+SVVNALSD L + + R+  +   +F RG+P +PL       
Sbjct: 1   GEFDQNSYKVSGGLHGVGVSVVNALSDWLKLKIYRKGKVHQMEFHRGVPQAPLAVTG-TT 59

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
           +K GT + F      F     +    L K  +  ++L+  VK      +         + 
Sbjct: 60  DKTGTEVHFLASVDTFVLV-EYHFEILAKRIRELSFLNNGVKIELIDQR-------TGKS 111

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
           E F F GG+K +++     ++++  ++F    EK      TVE A+ W +     +  + 
Sbjct: 112 ENFAFSGGVKGFVEYMNRTKTVLHPKVFYAIGEKDNI---TVEVAMQWNDSYSETVQCFT 168

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH +GLR A+TR + +Y E  +   K  +    DD+      +LSV + +P
Sbjct: 169 NNIPQRDGGTHLTGLRTAMTRTLNQYIEQNEFAKKAKVETTGDDMREGITCVLSVKVPDP 228

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F+ QTK KLVS + Q  V   +      +L +NP +A  +   ++E +  R   RK RE
Sbjct: 229 KFSSQTKDKLVSSEVQPVVSEIVAAKLAEFLEENPNDAKIVCGKIVEAARAREAARKARE 288

Query: 438 VNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
           + R+   +  + LPGKLADC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKI
Sbjct: 289 ITRRKGVMDTMGLPGKLADCQEKDPAMSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKI 348

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASL 554
           LNV  A  +K+  + +I  L+ A+G          E LRY ++IIMTDADVDG+HI +L
Sbjct: 349 LNVEKARFDKLLGSAEIATLITAMGTGIGKDDFNLEKLRYHRIIIMTDADVDGSHIRTL 407


>gi|33187295|gb|AAP97510.1| DNA gyrase subunit B [Campylobacter jejuni]
          Length = 403

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 167/417 (40%), Positives = 231/417 (55%), Gaps = 18/417 (4%)

Query: 136 TLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK 195
            LHAGGKFD  TY++SGGLHGVG+SVVNALS +L  TV R   I+ Q+FS G  +S    
Sbjct: 1   VLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGQVISEFGV 60

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
             K +   GT I F PD +IF     FD   L K  +  AYL+ ++   +  ++      
Sbjct: 61  IGKSKK-TGTTIEFWPDDQIFEVT-EFDYEILAKRFRELAYLNPKITINFKDNR------ 112

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI 315
            + + E F+F GG+  ++    +  +L  +  F+   E        VE A+ + +   E 
Sbjct: 113 -VGKHESFHFEGGISQFVTDLNKKEALTKAIFFSVDEED-----VNVEVALLYNDTYSEN 166

Query: 316 T-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSV 372
             S+ N I T +GGTHE+G R+ LTR I  Y E      ++   I  DD+    + I+SV
Sbjct: 167 LLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGDDVREGLIAIVSV 226

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
            + EP+F GQTK KL S   +  V  A  +    Y  +NPIEA  ++   +  +  R   
Sbjct: 227 KVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAA 286

Query: 433 RKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           +K RE   +K ++    LPGKLADC       +E+++VEGDSAGGSAKQ R RS QA+LP
Sbjct: 287 KKARELTRKKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILP 346

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           LRGKILNV  A  +KI  ++QI +++ A GC     +    LRY K+IIMTDADVDG
Sbjct: 347 LRGKILNVEKARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDG 403


>gi|323710224|gb|ADY03046.1| DNA gyrase B [Escherichia coli]
          Length = 260

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 94/270 (34%), Positives = 149/270 (55%), Gaps = 13/270 (4%)

Query: 82  IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141
           +DNA+DE +AG+   I V++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGG
Sbjct: 1   VDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGG 59

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL    +   
Sbjct: 60  KFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK 119

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             GT + F P  + F +   F+   L K  +  ++L+  V       ++  E       +
Sbjct: 120 -TGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------D 171

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N
Sbjct: 172 HFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTN 228

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ 350
            I   +GGTH +G R A+TR +  Y +   
Sbjct: 229 NIPQRDGGTHLAGFRAAMTRTLNAYMDKEG 258


>gi|328349731|emb|CBY89173.1| GyrB protein [Flavobacterium sp. R-38294]
          Length = 413

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 148/411 (36%), Positives = 229/411 (55%), Gaps = 10/411 (2%)

Query: 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN 177
           V+ H K    S LE+++T + AGGKFD  +Y++SGGLHGVG+S VNALSD L  TV R+ 
Sbjct: 1   VDIHKK-EGVSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSCVNALSDHLRATVFREG 59

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            ++ Q++ +G  + P+++  +  +KRGT +TF PD  IF     +    +    +  ++L
Sbjct: 60  KVYEQEYEKGKAMYPVKQIGET-DKRGTMVTFHPDKTIFTQTIEYSYDTIAARMRELSFL 118

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +    +  +++ EK      E F+   GLK +++   + R  I S + + + EK   
Sbjct: 119 NKGITITLTDRRDVNEKG-EFASEIFHSQEGLKEFVRFLDKGRESIISHVISMEHEK--- 174

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRA 354
               VE A+ +       I SY N I T EGGTH  G R+ LTR +KKYA+ +    K  
Sbjct: 175 GEIPVEVALVYNTSYSENIFSYVNNINTHEGGTHLQGFRMGLTRTLKKYADSSGLLDKLK 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             I  DD       I+SV ++EP+F GQTKTKL + +    V  A+ +  ++YL +NP +
Sbjct: 235 FEITGDDFREGLTAIISVKVQEPQFEGQTKTKLGNREVVSPVSQAVSEMLENYLEENPND 294

Query: 415 ATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA-DCSQNIAHGTELFIVEGDS 473
           A  +++ VI  ++ R   +K RE+ ++  +           DCS+      E+++VEGDS
Sbjct: 295 AKIIVQKVILAAQARHAAKKAREMVQRKTVLGGGGLPGKLSDCSEQDPAKCEVYLVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           AGG+AKQ R+R  QA+LPLRGKILNV  A   K+  N++I ++  ALG   
Sbjct: 355 AGGTAKQGRDRMFQAILPLRGKILNVEKAMPHKVFENEEIRNIFTALGVTI 405


>gi|209863964|gb|ACI88900.1| GyrB [Acidianus brierleyi]
          Length = 436

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 160/447 (35%), Positives = 245/447 (54%), Gaps = 33/447 (7%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD ++Y++SGGLHGVG+S VNALS  L +TV R   +   +F++G   
Sbjct: 1   EVIMTVLHAGGKFDQNSYKVSGGLHGVGVSCVNALSKWLRLTVRRDGQVNLIEFAKGEVQ 60

Query: 191 SP----------------LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           +                   K     +KRGT + F  D +IF +   F    L K  +  
Sbjct: 61  NRIIETVTGPDGQPVEVSPMKIVGATDKRGTEVHFLADEEIFTN-VEFHYEVLSKRIREL 119

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V       +         ++E+F F GG+K +++     ++ +   IF    EK
Sbjct: 120 SFLNNGVHIRLVDQR-------TGKEEDFAFAGGVKGFVEYINRAKTTLHPNIFYANAEK 172

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR 353
           +G    TVE A+ W +    ++  + N I   +GGTH +GLR A+TR I KY E  +  +
Sbjct: 173 EGI---TVEVAMQWNDGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEENEIAK 229

Query: 354 AIS--IISDDLMISAVGILSVFIREPEFAGQT-KTKLVSLDAQRTVENALRDPFDHYLVQ 410
                   DD+      +LSV + EP+F+ QT + KLVS + +  V   +      +L++
Sbjct: 230 RAKVETSGDDMREGLACVLSVKVPEPKFSSQTKRDKLVSSEVRLPVGELVGKALTDFLLE 289

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIV 469
            P +A  +   +++ +  R   RK RE+ R+   +  + LPGKLADC +     +ELF+V
Sbjct: 290 TPGDAKIICGKIVDAARAREAARKAREMTRRKGVMDGMGLPGKLADCQEKDPAQSELFLV 349

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           EGDSAGGSAKQ R+R  QA+LPL+GK LNV  A  +K+ ++Q+++ L+ ALG     +  
Sbjct: 350 EGDSAGGSAKQGRDRKFQAILPLKGKTLNVERARFDKMLSSQEVLTLITALGTGIGKEDY 409

Query: 530 E-EDLRYEKVIIMTDADVDGAHIASLL 555
             + LRY ++I MTDADVDG+HI +LL
Sbjct: 410 NLDKLRYHRIITMTDADVDGSHIRTLL 436


>gi|203366790|gb|ACH98386.1| DNA gyrase B subunit [Geitlerinema sp. Flo1]
          Length = 370

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 116/347 (33%), Positives = 187/347 (53%), Gaps = 5/347 (1%)

Query: 82  IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141
           +DN++DE +AGY   IE+ ++ +G ++V D+GRGIP E H K   +S LE +LT LHAGG
Sbjct: 1   VDNSIDEALAGYCTHIEIDINADGSVSVTDDGRGIPTEVHSK-TGRSALETVLTVLHAGG 59

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-KKEKVR 200
           KF    Y++SGGLHGVG+SVVNALS+ + VTV R+  + +Q++ RG P+  L+ K    +
Sbjct: 60  KFGGGGYKVSGGLHGVGVSVVNALSEWVEVTVWREKKVHTQRYERGKPVEDLKTKPSPDK 119

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
            + GT + F PD  IF     FD   +    +  AYL+  V+  ++ ++        P  
Sbjct: 120 KRTGTSVRFLPDRDIFTTGIEFDYTTIAGRIRELAYLNAGVRITFTDNRLEFLGTTEPRI 179

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCN 320
           E + + GG++ Y+Q    ++  I  EI     E+    +  V    +    +  +  + N
Sbjct: 180 ETYCYEGGIREYVQYMNRDKEPIHEEIIYVSGERNNV-QVEVALQWSIDAYSDNLLGFAN 238

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPE 378
            I T +GGTH  GL+  LTR +   A      +    ++  +++     G++SV + +PE
Sbjct: 239 NIRTVDGGTHLEGLKTVLTRTMNNIARKRNKLKEGASNLGGENVREGLTGVISVKVPDPE 298

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
           F GQTKTKL + + +  V++ + +    YL   P  A  +LE  I+ 
Sbjct: 299 FEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFRPNVADAILEKAIQA 345


>gi|295979551|dbj|BAJ07448.1| DNA gyrase subunit B [Brevundimonas diminuta]
 gi|295979555|dbj|BAJ07450.1| DNA gyrase subunit B [Brevundimonas diminuta]
 gi|295979559|dbj|BAJ07452.1| DNA gyrase subunit B [Brevundimonas diminuta]
          Length = 313

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 107/323 (33%), Positives = 170/323 (52%), Gaps = 21/323 (6%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DNA+DE +AG+A+L+ V+L+ +G +TV DNGRGIP   H +   
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEALAGHADLVTVTLNEDGSVTVTDNGRGIPTAIHAE-EG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALSD L + + R+    S +F R
Sbjct: 60  VSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLELVIYREGKKHSVRFER 119

Query: 187 GIPLSPLEKKEKV-------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
           G  +  L             R   GT +TF P    F     FD   L    +  A+L+ 
Sbjct: 120 GETVRALAVIGDAPMREDKGRLLTGTEVTFYPSVTTF-SHIDFDLKTLEHRLRELAFLNS 178

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            V    S  +        P +   ++ GG++ +++   ++++ I  ++   + +K G   
Sbjct: 179 GVVIKLSDHR-----GAEPVEIMLHYEGGVEAFVRHLDKSKTPILKDVIVIRGQKDGI-- 231

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
             ++ A+ W +     +  + N I   +GGTH S  R +LTR +  Y E +    K  ++
Sbjct: 232 -ELDLALWWNDSYHETMLCFTNNIPQRDGGTHLSAFRASLTRVMGSYIESSGLAKKEKVA 290

Query: 357 IISDDLMISAVGILSVFIREPEF 379
              +D       +LSV + +P+F
Sbjct: 291 PTGEDAREGLTCVLSVKVPDPKF 313


>gi|148971307|gb|ABR20191.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 156/430 (36%), Positives = 235/430 (54%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKF      +SGGLHGVG+SVVNALS +LH+ + R   +  Q++  G P 
Sbjct: 1   EVIMTVLHAGGKFRRQQLYVSGGLHGVGVSVVNALSSKLHLIINRAGQVHEQEYHHGDPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            PL    +  +  GT + F P  ++   +  F+   L +  +  ++L+  V+     ++ 
Sbjct: 61  YPLRVIGET-DSSGTTVRFWPS-ELTFSQTIFNVEILARRLRELSFLNAGVRIVLRDERI 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E         + + GGL  +++   E ++ ++         + G     VE A+ W E
Sbjct: 119 NLE-------HVYDYEGGLSEFVKYINEGKTHLNEIFHFTADTENGI---GVEVALQWNE 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTRG+ +Y E      K  +++  DD      
Sbjct: 169 SYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERS 426
            I+SV + +P+F+ QTK KLVS + +  VE A+   F  YL++NP  A  +   +I    
Sbjct: 229 AIISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAAR 288

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK+A+   R    LADC +     +EL++VEGDSAGGSAKQ RNR  
Sbjct: 289 ARDAARKAREMTRRKSALAYCRFTRLLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKM 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LP +GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY K+IIMTDAD
Sbjct: 349 QAILPFKGKILNVERARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|148971383|gb|ABR20229.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 157/428 (36%), Positives = 227/428 (53%), Gaps = 13/428 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFDN+TY++SGGLHGVG+SVVNALS+ L + + ++ + F Q + +G+P 
Sbjct: 1   EVIMTVLHAGGKFDNNTYKVSGGLHGVGVSVVNALSETLVLDIDQKGSHFRQTYHKGVPA 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL          GT I F PD  I      F    L    +   YL+  +         
Sbjct: 61  APLAVTGP-SETTGTSIRFYPDLSIMET-DAFSFDVLAHRFRELGYLNPSLTLS------ 112

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
              +     +E F+  GG++++L    EN+  +   +   K+   G+    V +      
Sbjct: 113 -LREEETLREEVFHDEGGIRSFLIFVNENKRTLHEPLSFRKSFDNGST-FEVAFQYQDTT 170

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
           +   + SY N I T EGGTH  G R ALTR + +Y +     +   +  +D+      ++
Sbjct: 171 DAETLLSYVNNIPTREGGTHVRGFRAALTRVVNRYIKEKNLNKGEEVKGEDIREGLSALI 230

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           S+ I  P+F GQTK KL S      +E  L +  +    +    A  + +  I  ++ R 
Sbjct: 231 SIKIPNPQFEGQTKAKLGSSWVSGAMETFLAEFLEDAFEKQGAIARSIADKAILSAQARE 290

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK RE   RK  +    LPGKLADC +N     EL+IVEGDSAGGSAKQ R+R  QA+
Sbjct: 291 AARKARELTKRKNVLEGSNLPGKLADCQENDPSKCELYIVEGDSAGGSAKQGRDRRFQAI 350

Query: 490 LPLRGKILNVASAG-SEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVD 547
           LPL+GKILNV      E+   + ++  L+ A+GC   ++      LRY K+IIMTDADVD
Sbjct: 351 LPLKGKILNVEKTKGVEEFITHDEVRALITAVGCGLGAEEFSLKNLRYHKIIIMTDADVD 410

Query: 548 GAHIASLL 555
           G+HI +LL
Sbjct: 411 GSHIRTLL 418


>gi|68159575|gb|AAY86369.1| gyrase B [Clostridium clostridioforme]
          Length = 426

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 155/436 (35%), Positives = 216/436 (49%), Gaps = 21/436 (4%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFDN  Y+ SGGLHGVG SVVNALS  + + V R   I+  ++ +G P+
Sbjct: 1   EVIMTVLHAGGKFDNDAYKTSGGLHGVGSSVVNALSAHMDLKVYRDGFIYHDEYEKGRPV 60

Query: 191 SPLE-----KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
             LE        K R   GT I F PD  IF     F A  L       AYL+  +   +
Sbjct: 61  IKLENGLLPVIGKTRE-TGTCINFLPDGDIFEKTR-FKADWLKSRLHETAYLNPNLTLYY 118

Query: 246 SCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
              +      G  EK  F+ P G+  Y++     ++ +   I+   T  K      +++ 
Sbjct: 119 ENKR-----PGEGEKVAFHEPEGIVAYVRELNSGKTPVHDPIYFKGTVDKVEVEAAIQFV 173

Query: 306 IAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
             + E    I  +CN I T EGGTH +G +   T  I  YA        +  +    D  
Sbjct: 174 DTFEEN---ILGFCNNIFTQEGGTHLAGFKTKFTALINSYAREIGILKDKDTNFTGADTR 230

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                +++V   +P F GQTKTKL S DA + V     D    Y  +N      ++    
Sbjct: 231 NGMTAVIAVKHPDPIFEGQTKTKLASADATKAVFTVTGDELQLYFDRNVEVLKGVIGCAE 290

Query: 424 ERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483
           + ++ R    K +      +       GKLA+C    A   E+FIVEGDSAGGSAK ARN
Sbjct: 291 KSAKIRRAEEKAKTNMLTKSKFSFDSNGKLANCESRDASRCEIFIVEGDSAGGSAKTARN 350

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC----RTRSQYREEDLRYEKVI 539
           R  QA+LP+RGKILNV  A  +K+  N +I  ++ + GC       + +    LRY+K+I
Sbjct: 351 RQYQAILPIRGKILNVEKASMDKVLANAEIKTMINSFGCGFSEGYGNDFDITKLRYDKII 410

Query: 540 IMTDADVDGAHIASLL 555
           +MTDADVDG+HI +LL
Sbjct: 411 LMTDADVDGSHIRTLL 426


>gi|2196844|gb|AAB80839.1| DNA gyrase beta-subunit [Shewanella sp. MR-7]
          Length = 419

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 157/430 (36%), Positives = 242/430 (56%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T L   GKFD+++Y++SGGLHGVG+SVVNALS +L +T+ R+  +  Q ++ G+P 
Sbjct: 1   EVIMTVLQPVGKFDHNSYKVSGGLHGVGVSVVNALSKKLQLTIRREGKVHEQFYTHGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            P++         GT I F P  + F D   F    L K  +  ++L+  V      +++
Sbjct: 61  EPIKVIGDATK-TGTEIRFWPSEETFSD-VEFHFEILAKRVRELSFLNSGVGIRLVDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + E F + GG+  ++     N++ ++ ++F    E++     TVE A+ W +
Sbjct: 119 N-------KNEFFKYEGGISAFVDYLNRNKTPVNKDVFHFMQERED--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R ALTR +  Y E      K   +   DD      
Sbjct: 170 GYQESIFCFTNNIPQRDGGTHLAGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +  + YL++NP +A  ++  +++   
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSSEVKAAVEQTMGEKLNDYLLENPADAKLIVGKIVDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +E++IVEGD AGGSAKQ RNR N
Sbjct: 290 AREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDFAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+  +Q++  L+ ALGC   R +Y  +  RY K+IIMTDA 
Sbjct: 350 QAILPLKGKILNVEKARFDKMLFSQEVATLITALGCGIGRDEYNPDKTRYHKIIIMTDAY 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHILTLL 419


>gi|269799102|gb|ACZ43829.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 372

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 128/383 (33%), Positives = 208/383 (54%), Gaps = 16/383 (4%)

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AG+   + V++  +G ++V D+GRGIPV+ H +    S  E+ILT LHAGGKFD+++Y++
Sbjct: 1   AGHCTDVVVTIHEDGSVSVSDDGRGIPVDIHEE-EGVSAAEVILTVLHAGGKFDDNSYKV 59

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS++L +T+ R   I  Q +  G P +P+     + +  GT + F 
Sbjct: 60  SGGLHGVGVSVVNALSEKLELTIHRHGHIHQQIYRHGEPQAPIAVIGDI-DTTGTELRFW 118

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F    L K  +  ++L+  V      ++E        + + F + GG+K
Sbjct: 119 PSHETFTNTL-FHYDILAKRLRELSFLNSGVSIKLIDERED------GKSDHFVYEGGIK 171

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            ++     N++ I+ + F    E++     TVE A+ W +     I  + N I   +GGT
Sbjct: 172 AFVDYLNVNKTPINKDAFHFSVERED--GITVEVAMQWNDGFQEGIYCFTNNIPQRDGGT 229

Query: 330 HESGLRVALTRGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           H +G R ALTR +  Y E     +  ++ +   DD       ++SV + +P+F+ QTK K
Sbjct: 230 HLAGFRGALTRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDK 289

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLRRRKQREVNRKTAIR 445
           LVS + +  VE A+ +    YL++NP EA+ ++  +I+ S      R+ +    RK A+ 
Sbjct: 290 LVSSEVKSAVEQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKAREMTRRKGALD 349

Query: 446 KLRLPGKLADCSQNIAHGTELFI 468
              LPGKLADC +     +EL+I
Sbjct: 350 LAGLPGKLADCQEKDPALSELYI 372


>gi|110612647|gb|ABG78286.1| GyrB [uncultured bacterium]
 gi|110612649|gb|ABG78287.1| GyrB [uncultured bacterium]
          Length = 405

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 156/417 (37%), Positives = 243/417 (58%), Gaps = 17/417 (4%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS+ELH+TV R   +  Q +  G+P +P+ +        
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEELHMTVRRNGRVHEQHYRHGVPDAPMAETGDAT-TT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+I F+P  + F +   F    L K  +  +YL+  V      ++          ++ F
Sbjct: 60  GTQIWFKPSAETFSNI-EFHYDILAKRLRELSYLNSGVCIHLYDERSQ-------RQDTF 111

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTI 322
           ++ GG+  +++   +N+++I   +F+  TEK       VE ++ W +   E    + N I
Sbjct: 112 HYEGGITAFVEHLNKNKNVIIPTVFSMITEKDNI---VVELSMQWNDSYQETLYCFTNNI 168

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  Y E      K  +S   DD       +LSV + +P+F+
Sbjct: 169 PQRDGGTHMAGFRAALTRTLNNYIESEGYAKKAKVSPTGDDAREGLTAVLSVKVPDPKFS 228

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE+ + + F+ +L++NP  A  ++  +I+ +  R   R+ R    
Sbjct: 229 SQTKDKLVSSEVKAVVESGVAEKFNDFLLENPSCAKAIVGKIIDAARAREAARRAREMTR 288

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV
Sbjct: 289 RKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNV 348

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLL 555
             A  +K+ ++Q++  L+ ALGC     +Y  + +RY ++IIMTDADVDG+HI +LL
Sbjct: 349 EKARFDKMLSSQEVATLITALGCGIGPDEYDPDKVRYHRIIIMTDADVDGSHIRTLL 405


>gi|110612659|gb|ABG78292.1| GyrB [uncultured bacterium]
          Length = 409

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 168/421 (39%), Positives = 248/421 (58%), Gaps = 17/421 (4%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+ +Y++SGGLHGVG+SVVNALS+ L +T+ R   I+ Q++  G+P  P++    V
Sbjct: 1   GGKFDSDSYKVSGGLHGVGVSVVNALSEMLQLTIRRDGKIYYQEYQMGVPQFPIKPIG-V 59

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
              RGT I F+P P++FGD   F    L K  +  A+L+  V+     ++       I +
Sbjct: 60  AESRGTEIRFKPSPQVFGDT-EFHYDILAKRLRELAFLNSGVRINLHDER-------IGK 111

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
            + F + GG++ +++    N++ + S +F    +K  T    VE A+ W +     I  +
Sbjct: 112 SDTFEYQGGIRAFVEHLNRNKTPLHSTVFYFCADKDKT---EVELALQWNDSYQENIFCF 168

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +G R ALTR + +Y E      K  I    DD       ILSV + +
Sbjct: 169 TNNIPQRDGGTHLAGFRSALTRTLNQYIEAEGIAKKAKIVPTGDDAREGLTAILSVKLAD 228

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F+ QTK KLVS + +  VE+ + + F  +L++NP +A  +   VI+ +  R   RK R
Sbjct: 229 PKFSSQTKDKLVSSEIKGVVESVVAEKFHEFLLENPADARAIASKVIDAARAREAARKAR 288

Query: 437 EVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E+ R+   +    LPGKLADC +     +ELF+VEGDSAGGSAKQ R+R  QA+LPL+GK
Sbjct: 289 EMTRRKGVLDVAGLPGKLADCQEKDPALSELFLVEGDSAGGSAKQGRDRRFQAILPLKGK 348

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           ILNV  A  +K+ ++ ++  L+ ALGC   R  +  + LRY +VIIMTDADVDG+HI +L
Sbjct: 349 ILNVEKARFDKMLSSVEVGTLITALGCGIGRDDFNPDKLRYHRVIIMTDADVDGSHIRTL 408

Query: 555 L 555
           L
Sbjct: 409 L 409


>gi|2267076|gb|AAB63503.1| gyrase B subunit [Pseudoalteromonas tetraodonis]
          Length = 422

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 158/423 (37%), Positives = 245/423 (57%), Gaps = 16/423 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L +T+ R+  +  Q +S G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLTLTIRREGKLHEQTYSMGVPN 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL       +  GT + F P  + F +   F    L K  +  ++L+  V    S ++E
Sbjct: 61  APLAVIGDA-DTTGTELRFWPSGETFTN-LDFHYDILAKRLRELSFLNSGVSIILSDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + + F + GG++ +++    N++ +   +F    E++     +VE ++ W +
Sbjct: 119 ------ENKTDHFKYDGGIQAFVEYLNRNKTPVHKGVFHFTHERE-EDGISVEVSMQWND 171

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYA----ELTQNKRAISIISDDLMIS 365
                I  + N I   +GGTH +G R ALTR +  Y        + K   +   DD    
Sbjct: 172 GFQENIYCFTNNIPQRDGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREG 231

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE- 424
              ++SV + +P+F+ QTK KLVS + +  VE A+ + F  +L++NP++A  ++  +I+ 
Sbjct: 232 LTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQAMAEKFSDFLLENPMDAKIVVGKIIDA 291

Query: 425 RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
                  R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR
Sbjct: 292 ARAREAARKAREMTRRKGAMDLAGLPGKLADCQEKDPSLSELYIVEGDSAGGSAKQGRNR 351

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTD 543
            NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  E LRY  +IIMTD
Sbjct: 352 KNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYDPEKLRYHSIIIMTD 411

Query: 544 ADV 546
           ADV
Sbjct: 412 ADV 414


>gi|269799116|gb|ACZ43836.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 373

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 129/384 (33%), Positives = 209/384 (54%), Gaps = 16/384 (4%)

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+   + V++  +G ++V D+GRGIPV+ H +    S  E+ILT LHAGGKFD+++Y++S
Sbjct: 1   GHCTDVVVTIHEDGSVSVSDDGRGIPVDIHEE-EGVSAAEVILTVLHAGGKFDDNSYKVS 59

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS++L +T+ R   I  Q +  G P +P+     + +  GT + F P
Sbjct: 60  GGLHGVGVSVVNALSEKLELTIHRHGHIHQQIYRHGEPQAPIAVIGDI-DTTGTELRFWP 118

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++E        + + F + GG+K 
Sbjct: 119 SHETFTNTL-FHYDILAKRLRELSFLNSGVSIKLIDERED------GKSDHFVYEGGIKA 171

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++     N++ I+ + F    E++     TVE A+ W +     I  + N I   +GGTH
Sbjct: 172 FVDYLNVNKTPINKDAFHFSVERED--GITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTH 229

Query: 331 ESGLRVALTRGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
            +G R ALTR +  Y E     +  ++ +   DD       ++SV + +P+F+ QTK KL
Sbjct: 230 LAGFRGALTRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKL 289

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLRRRKQREVNRKTAIRK 446
           VS + +  VE A+ +    YL++NP EA+ ++  +I+ S      R+ +    RK A+  
Sbjct: 290 VSSEVKSAVEQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKAREMTRRKGALDL 349

Query: 447 LRLPGKLADCSQNIAHGTELFIVE 470
             LPGKLADC +     +EL+IVE
Sbjct: 350 AGLPGKLADCQEKDPALSELYIVE 373


>gi|239735453|dbj|BAH70493.1| gyrase B subunit [Cardinium endosymbiont of Indozuriel dantur]
          Length = 422

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 160/428 (37%), Positives = 238/428 (55%), Gaps = 15/428 (3%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LS  L VTV R   I+ Q +++GIP  P+++     + RGT + F PDP IF     ++ 
Sbjct: 1   LSTHLEVTVYRNGKIYKQAYAQGIPRYPVQEVG-TTDLRGTTLHFTPDPSIFTTTV-YNL 58

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             ++   Q  AYL+  ++      +E  E+   P  + F+  GGL  ++      +  I 
Sbjct: 59  HTIVNRLQELAYLNIGLQMQLEDLRERDEQG-NPFSQTFHSEGGLLEFVAHLDSTKVAIM 117

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
                 + EK       V+ A+ +       + SY N I T EGG H +G R ALTR +K
Sbjct: 118 PMPILVEGEKNNV---VVQVAMTYNTGYSETVVSYVNNIHTIEGGMHVTGFRRALTRTLK 174

Query: 344 KYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            YA+ +    K  I I+ DD       ++SV + EP+F GQTKTKL + + Q  VE+ + 
Sbjct: 175 SYADKSGLLEKAKIEIVGDDFREGLTAVISVKVAEPQFEGQTKTKLGNAEVQSAVESCVG 234

Query: 402 DPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
           +   +YL ++P EA  ++  VI      +  R+ +  V RK  +    LPGKLADCS+  
Sbjct: 235 EVLHYYLEEHPKEAKLIINKVIIAAQARQAARKAREMVQRKNVLMSNSLPGKLADCSERD 294

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
               ELF+VEGDSAGG+AK  RNR  QA+LPL+GKILNV  A + KI +N+Q+ +++ AL
Sbjct: 295 PALCELFLVEGDSAGGTAKMGRNRRFQAILPLKGKILNVEKAQTYKIYDNEQVRNMITAL 354

Query: 521 GCR-----TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           G              + LRY K++IMTDADVDG+HI +L+LTFF++ M D+IE+ +L++ 
Sbjct: 355 GISMGTDGNEQAIHLDKLRYHKIVIMTDADVDGSHIRTLILTFFFRYMRDIIEKGYLYIA 414

Query: 576 SPPLFRIT 583
           SPPL+ + 
Sbjct: 415 SPPLYLVK 422


>gi|2267056|gb|AAB63493.1| gyrase B subunit [Marinomonas communis]
          Length = 422

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 151/431 (35%), Positives = 237/431 (54%), Gaps = 15/431 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+ + +T+ +   ++ Q ++ G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSETVTLTIRKNGKVYEQHYAHGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK-TCWSCDK 249
           +PL    +  + +GT + F+P  + F +   F    L K  +                ++
Sbjct: 61  APLAVIGE-SDGKGTTVHFKPSAETFSNIL-FVYDILAKRLRGAVIPELWCSAIHLKDER 118

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
              EK        F + GGLK++++    N+  I+         +   +   V+ A+ W 
Sbjct: 119 TGKEKS-------FNYKGGLKSFVEHLNTNKQPINDIFHFICQRENLKNGIAVKLALQWN 171

Query: 310 EENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISA 366
           E   +    Y N I   +GGTH +G R ALTR +  + E      K+ ++   DD     
Sbjct: 172 EGFQKNIYCYTNNIPQRDGGTHLAGFRGALTRTLNNFIEAEGLAKKQKVATTGDDCREGL 231

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-R 425
             I+SV + +P+F+ QTK KLVS + +  VE  +   F  +L++ P EA  ++  +++  
Sbjct: 232 TAIVSVKVPDPKFSSQTKDKLVSSEVKTAVEQEMSKRFAEFLLEKPNEAKTIVNKMLDAA 291

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
                 RR +    RK A+    LPGKL DC +     +E+++VEGDSAGGSAKQ R+R 
Sbjct: 292 RAREAARRARDMTRRKGALDIAGLPGKLLDCQEKDPALSEIYLVEGDSAGGSAKQGRDRR 351

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDA 544
            QA+LPL+GKILNV  A  +K+ ++ ++  L+ ALGC         + LRY  ++IMTDA
Sbjct: 352 TQAILPLKGKILNVEKARFDKMLSSAEVGTLITALGCGIGRDEFNADKLRYHSIVIMTDA 411

Query: 545 DVDGAHIASLL 555
           DVDG+HI +LL
Sbjct: 412 DVDGSHIRTLL 422


>gi|239735451|dbj|BAH70492.1| gyrase B subunit [Cardinium endosymbiont of Euides speciosa]
          Length = 422

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 160/428 (37%), Positives = 238/428 (55%), Gaps = 15/428 (3%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LS  L VTV R   I+ Q +++GIP  P+++     + RGT + F PDP IF     ++ 
Sbjct: 1   LSTHLEVTVYRNGKIYKQAYAQGIPRYPVQEVG-TTDLRGTTVHFTPDPSIFTTTV-YNL 58

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             ++   Q  AYL+  ++      +E  E+   P  + F+  GGL  ++      +  I 
Sbjct: 59  HTIVNRLQELAYLNIGLQMQLEDLRERDEQG-NPFSQTFHSEGGLLEFVAHLDSTKVAIM 117

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
                 + EK       V+ A+ +       + SY N I T EGG H +G R ALTR +K
Sbjct: 118 PMPILVEGEKNNV---VVQVAMTYNTGYSETVVSYVNNIHTIEGGMHVTGFRRALTRTLK 174

Query: 344 KYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            YA+ +    K  I I+ DD       ++SV + EP+F GQTKTKL + + Q  VE+ + 
Sbjct: 175 SYADKSGLLEKAKIEIVGDDFREGLTAVISVKVAEPQFEGQTKTKLGNAEVQSAVESCVG 234

Query: 402 DPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
           +   +YL ++P EA  ++  VI      +  R+ +  V RK  +    LPGKLADCS+  
Sbjct: 235 EVLHYYLEEHPKEAKLIINKVIIAAQARQAARKAREMVQRKNVLMSNSLPGKLADCSERD 294

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
               ELF+VEGDSAGG+AK  RNR  QA+LPL+GKILNV  A + KI +N+Q+ +++ AL
Sbjct: 295 PALCELFLVEGDSAGGTAKMGRNRRFQAILPLKGKILNVEKAQTYKIYDNEQVRNMITAL 354

Query: 521 GCR-----TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           G              + LRY K++IMTDADVDG+HI +L+LTFF++ M D+IE+ +L++ 
Sbjct: 355 GISMGTDGNEQAIHLDKLRYHKIVIMTDADVDGSHIRTLILTFFFRYMRDIIEKGYLYIA 414

Query: 576 SPPLFRIT 583
           SPPL+ + 
Sbjct: 415 SPPLYLVK 422


>gi|328349739|emb|CBY89177.1| GyrB protein [Flavobacterium sp. R-38423]
 gi|328349747|emb|CBY89181.1| GyrB protein [Flavobacterium sp. R-40835]
 gi|328349751|emb|CBY89183.1| GyrB protein [Flavobacterium sp. R-37599]
 gi|328349767|emb|CBY89191.1| GyrB protein [Flavobacterium sp. R-36964]
          Length = 427

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 166/433 (38%), Positives = 242/433 (55%), Gaps = 16/433 (3%)

Query: 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA-RQ 176
           V  H K    S LE+++T + AGGKFD  +Y++SGGLHGVG+SVVNALS+ L  TV    
Sbjct: 1   VGIHKK-EGVSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSD 59

Query: 177 NTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAY 236
             ++ Q++ +G  L P+++  +    RGT +TF PDP IF     +    L    +  ++
Sbjct: 60  GKVYEQEYEKGKALYPVKQIGETTK-RGTIVTFYPDPSIFTQTIEYSYDTLSARMRELSF 118

Query: 237 LSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG 296
           L+  +   ++  +E  +K G    E F+   GLK Y++    NR  I + + +   EK  
Sbjct: 119 LNKGITITFTDKRE-VDKEGNFVSEIFHSDEGLKEYIRYLDGNREPIIAHVISMDHEK-- 175

Query: 297 THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KR 353
                VE A+ +       I SY N I T EGGTH  G R  LTR +KKYA+ +    K 
Sbjct: 176 -GEIPVEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGMLDKL 234

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
              I  DD       I+SV ++EP+F GQTKTKL + +    V  A+ +  ++YL +NP 
Sbjct: 235 KFDISGDDFREGLTAIISVKVQEPQFEGQTKTKLGNREVVSPVSQAVSEMIENYLEENPN 294

Query: 414 EATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
           +A  +++ VI  ++ R   +K RE+  RKT +    LPGKL+DCS+      E+++VEGD
Sbjct: 295 DARIIVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGD 354

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY---- 528
           SAGG+AKQ R+R+ QA+LPLRGKILNV  A   K+  N++I ++  ALG    ++     
Sbjct: 355 SAGGTAKQGRDRAFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTVGTEEDSKA 414

Query: 529 -REEDLRYEKVII 540
                LRY KVII
Sbjct: 415 LNISKLRYHKVII 427


>gi|312271576|gb|ADQ56143.1| DNA gyrase subunit B [Vibrio sp. K0606-41]
 gi|312271580|gb|ADQ56145.1| DNA gyrase subunit B [Vibrio sp. K0706-35]
 gi|312271582|gb|ADQ56146.1| DNA gyrase subunit B [Vibrio sp. PS0705-3A4]
 gi|312271588|gb|ADQ56149.1| DNA gyrase subunit B [Vibrio sp. K0406-01S]
          Length = 373

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 128/384 (33%), Positives = 208/384 (54%), Gaps = 15/384 (3%)

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+   I V++  +  ++V D+GRGIP E H +  N S  E+I+T LHAGGKFD+++Y++S
Sbjct: 1   GHCKDIVVTIHEDNSVSVSDDGRGIPTEIHSE-ENVSAAEVIMTVLHAGGKFDDNSYKVS 59

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K GT+I F P
Sbjct: 60  GGLHGVGVSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQIRFWP 118

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++E        + + F + GG++ 
Sbjct: 119 SAETFSN-TEFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KHDHFMYEGGIQA 171

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++     N++ I  +IF   +E++     +VE A+ W +     I  + N I   +GGTH
Sbjct: 172 FVDHLNTNKTPIIEKIFHFNSERED--GISVEVAMQWNDGFQENIFCFTNNIPQRDGGTH 229

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QTK KLV
Sbjct: 230 LAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 289

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE+A+ +    +L++NP EA  +   +I+        R+ +    RK A+   
Sbjct: 290 SSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLA 349

Query: 448 RLPGKLADCSQNIAHGTELFIVEG 471
            LPGKLADC +     +EL+IVEG
Sbjct: 350 GLPGKLADCQEKDPALSELYIVEG 373


>gi|29652707|gb|AAO87323.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652731|gb|AAO87335.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652783|gb|AAO87361.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652857|gb|AAO87398.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652928|gb|AAO87433.1| DNA gyrase B [Listeria monocytogenes]
          Length = 204

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 89/200 (44%), Positives = 122/200 (61%), Gaps = 2/200 (1%)

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 7   RKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILN 66

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 67  VEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTL 126

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+K
Sbjct: 127 FYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYK 184

Query: 619 GLGEMLASQLKETAMDANKR 638
           GLGEM   QL +T M+   R
Sbjct: 185 GLGEMNPEQLWDTTMNPEHR 204


>gi|29652845|gb|AAO87392.1| DNA gyrase B [Listeria monocytogenes]
          Length = 200

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 89/200 (44%), Positives = 122/200 (61%), Gaps = 2/200 (1%)

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 3   RKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILN 62

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 63  VEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTL 122

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+K
Sbjct: 123 FYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYK 180

Query: 619 GLGEMLASQLKETAMDANKR 638
           GLGEM   QL +T M+   R
Sbjct: 181 GLGEMNPEQLWDTTMNPEHR 200


>gi|330872227|gb|EGH06376.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 221

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 86/223 (38%), Positives = 135/223 (60%), Gaps = 7/223 (3%)

Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523
           +ELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN       ++  +Q++ ++  A+G  
Sbjct: 3   SELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEVHNIAVAIGVD 62

Query: 524 TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT 583
             +      LRY K+ I+ DAD DG HIA+LL   F Q    L++  H+++  PPL+RI 
Sbjct: 63  PGAADI-SQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHVYVAMPPLYRID 121

Query: 584 QGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLR 642
            G +  YA DE  +  IL+    +  +GK +++RFKGLGEM   QL+ET MD N R L++
Sbjct: 122 LGKEIYYALDESERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQ 181

Query: 643 VEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDV 684
           + ++        T + ++ L+  K A +R  +++ + +  + +
Sbjct: 182 LTLDD----FAATSEMMDMLLAKKRAGDRKSWLESKGNLAEVL 220


>gi|110612665|gb|ABG78295.1| GyrB [uncultured bacterium]
          Length = 405

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 155/415 (37%), Positives = 227/415 (54%), Gaps = 13/415 (3%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFDNS Y++SGGLHGVG+SVVNALS+ L + + +   I  Q + +G P +PL    +  
Sbjct: 1   GKFDNSLYKVSGGLHGVGVSVVNALSETLFLEIHQNGLIHRQTYHKGTPEAPLAVFGET- 59

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
           ++RGT I F PD  I      F    L    +  A+L+  +      ++ + E       
Sbjct: 60  DQRGTTIRFWPDMTIMET-DQFSFETLAHRFREMAFLNPVLTIHLKDEETLRE------- 111

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCN 320
           E F+F GG+++++    EN+      +F  K  + G+ +  V +      EN  +  + N
Sbjct: 112 ETFHFEGGVQSFVSFLNENKKTFHDVLFFRKNMEDGS-QFEVAFQYQESTENETVLGFAN 170

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFA 380
            I T EGGTH  G R A+T+ I ++    Q  +   +  +D+     GI+SV I  P+F 
Sbjct: 171 NIHTREGGTHVRGFRTAITKTINRFIREKQLNKGEEVRGEDVREGLTGIISVRIPSPQFE 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VN 439
           GQTK KL S      +E+ L +       ++P  A K+ E  +  ++ R   RK ++   
Sbjct: 231 GQTKAKLGSSWVAGAMESFLSEVLQEKFEEDPQTAKKIAEKAVLTAQAREAARKAKDLAK 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK  +    LPGKLADC ++    +EL+IVEGDSAGGSAKQ R+R  QA+LPL+GKILNV
Sbjct: 291 RKNVLEGSNLPGKLADCQESDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKGKILNV 350

Query: 500 ASAG-SEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIA 552
             +   EK   N ++  L+ A+GC    +   E+ LRY K+IIMTDADVDG+HI 
Sbjct: 351 EKSRGIEKFITNDEVRALITAVGCGLGDEEFSEKKLRYHKIIIMTDADVDGSHIR 405


>gi|190148818|gb|ACE63384.1| DNA gyrase B subunit [Thermobifida fusca]
          Length = 415

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 154/421 (36%), Positives = 230/421 (54%), Gaps = 10/421 (2%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+ +Y +SGGLHGVG+SVVNALS +L V V R   +++Q +    P+
Sbjct: 1   EVIMTVLHAGGKFDSKSYAVSGGLHGVGVSVVNALSTQLEVEVRRDGYLWTQSYEMTKPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           + L ++E   ++ GT+ITF PD  IF     F+   L +  Q  A+L+  +      ++ 
Sbjct: 61  TELIRREPT-DETGTQITFWPDGSIFETTT-FNFETLSRRLQEMAFLNKGLSITIRDER- 117

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                  P  + +Y+ GGL  +++     +  + S I   +    G     VE A+ W +
Sbjct: 118 PEFVGDSPVTQTYYYEGGLSDFVRHLNATKEPVHSSIIAFEEAGDGI---AVEIAMQWNQ 174

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                + ++ NTI T EGGTHE G R ALT  + +YA   +    +   +  DD+     
Sbjct: 175 SYTSSVHTFANTINTAEGGTHEEGFRAALTSIVNRYARDQKLLRDKDEDLTGDDIREGLT 234

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERS 426
            I+SV + +P+F GQTKTKL + +A+  V+    +    +L +NP EA  ++ +      
Sbjct: 235 AIVSVKLADPQFEGQTKTKLGNTEAKSFVQKVCHEYLRDWLDRNPGEAKDIVTKATQAAR 294

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RKT +    LPGKLADC        E++IVEGDSAGGSAK  R+   
Sbjct: 295 ARIAARQARELTRRKTLLESTSLPGKLADCQSTDPERCEVYIVEGDSAGGSAKGGRDPYY 354

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADV 546
           QA+LP+RGKILNV  A  ++I  N ++  ++ ALG      +    LRY K+I+MTDADV
Sbjct: 355 QAILPIRGKILNVEKARIDRILKNNEVQAIITALGTGIHDDFDITKLRYHKIILMTDADV 414

Query: 547 D 547
           D
Sbjct: 415 D 415


>gi|33187305|gb|AAP97515.1| DNA gyrase subunit B [Campylobacter jejuni]
          Length = 402

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 167/416 (40%), Positives = 231/416 (55%), Gaps = 18/416 (4%)

Query: 137 LHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK 196
           LHAGGKFD  TY++SGGLHGVG+SVVNALS +L  TV R   I+ Q+FS G  +S     
Sbjct: 1   LHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVI 60

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
            K +   GT I F PD +IF     FD   L K  +  AYL+ ++   +  ++       
Sbjct: 61  GKSKK-TGTTIEFWPDDQIFEVT-EFDYEILAKRFRELAYLNPKITINFKDNR------- 111

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT 316
           + + E F+F GG+  ++    +  +L  +  F+   E        VE A+ + +   E  
Sbjct: 112 VGKHESFHFEGGISQFVTDLNKKEALTKAIFFSVDEED-----VNVEVALLYNDTYSENL 166

Query: 317 -SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
            S+ N I T +GGTHE+G R+ LTR I  Y E      ++   I  DD+    + I+SV 
Sbjct: 167 LSFVNNIKTPDGGTHEAGFRMGLTRVISXYIEANASAREKDNKITGDDVREGLIAIVSVK 226

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + EP+F GQTK KL S   +  V  A  +    Y  +NPIEA  ++   +  +  R   +
Sbjct: 227 VPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAK 286

Query: 434 KQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           K RE   +K ++    LPGKLADC       +E+++VEGDSAGGSAKQ R RS QA+LPL
Sbjct: 287 KARELTRKKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPL 346

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           RGKILNV  A  +KI  ++QI +++ A GC     +    LRY K+IIMTDADVDG
Sbjct: 347 RGKILNVEKARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDG 402


>gi|326804512|ref|YP_004327383.1| DNA topoisomerase 2 [Salmonella phage Vi01]
 gi|301795162|emb|CBW37880.1| DNA topoisomerase 2 [Salmonella phage Vi01]
          Length = 636

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 133/663 (20%), Positives = 229/663 (34%), Gaps = 81/663 (12%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTDE------------------------KALHHLFSEV 81
               + L  +E + +RP  ++G                             AL   F E+
Sbjct: 8   ERKYKKLTHIEHILLRPERHLGSIRSAVGTTWIYDPIKDQVIFKDNFEYSPALIKQFDEI 67

Query: 82  IDNAMDEVIAGYAN---LIEVSLDG-NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137
           I N++D            I +++   NG + V DNG GIPV  H +   +   E++  +L
Sbjct: 68  ITNSVDHSKTPEGKSLTEITITVSPMNGQIIVADNG-GIPVVKHGE-TKEWLPEMLFGSL 125

Query: 138 HAGGKFDNS----TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           +AG  F++       + SGG +G G S+VN  S    VT       ++Q F   +     
Sbjct: 126 YAGSNFNDDDEEYNNKKSGGQNGEGASLVNVFSKWFRVTTNDGKKSYTQTFEDNLSKRSN 185

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL--KMTQSKAYLSGRVKTCWSCDKEI 251
                + N  GT I + PD    G K       L+  +     A  + R+K   +  +  
Sbjct: 186 PVISNL-NAPGTSIAWIPDYARLGVKGLDQNNLLMIYRRAFEVAACNPRLKVILNGKQIR 244

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
            +++           G    Y                                A+A  + 
Sbjct: 245 IDRF-----------GHFVDYFCQGSSVDET-----------------EEWSVAVAPSQG 276

Query: 312 NPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILS 371
                SY N+I T  GG H   +   +   I+        K    +    +    +  +S
Sbjct: 277 TFIHASYVNSIATHIGGPHVDYVADQIVNAIR---PQLVKKFKTDLKPSMIKNHMMLFIS 333

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
             I  P F  QTK ++ +  +Q        D      ++            +   ++   
Sbjct: 334 ADINNPRFDSQTKERMTTPVSQFGTTYKPSDKLIRKALEFVTAGLSKELAALRNDQDDAE 393

Query: 432 RRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
             K ++   K   R++         ++    G  L + EGDSA      AR+     + P
Sbjct: 394 FEKAKKDISKRDYREIEKY--YPATARGDRSGCSLLLTEGDSASNPILNARDTKKIGLFP 451

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHI 551
           LRGK +N  +    K+ NN++  +L    G     Q  +   RY + ++ TDAD DG HI
Sbjct: 452 LRGKFINCLNNPRSKVMNNEEFKNLCTIHGGAVPGQPIDIT-RYPQTVVATDADDDGIHI 510

Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK 611
             LL+T +     + + Q  L L+  P  RI  G            ++ L+        K
Sbjct: 511 RGLLITLYCTYWPEYVRQGRLKLLRTPYMRIWCGKTMYEFMSNTEYEEFLKTPDAKKITK 570

Query: 612 IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE-R 670
            +  +  GLG       K    + +  T   V ++ +        +S+    G +A + R
Sbjct: 571 KKYLK--GLGGNSTEDFKRILNNLDAYT-TTVTLDDNYK------ESLKNGFGDEAADYR 621

Query: 671 FKF 673
             +
Sbjct: 622 KTW 624


>gi|29652801|gb|AAO87370.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652924|gb|AAO87431.1| DNA gyrase B [Listeria monocytogenes]
          Length = 199

 Score =  247 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 89/200 (44%), Positives = 122/200 (61%), Gaps = 2/200 (1%)

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 2   RKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILN 61

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 62  VEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTL 121

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+K
Sbjct: 122 FYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYK 179

Query: 619 GLGEMLASQLKETAMDANKR 638
           GLGEM   QL +T M+   R
Sbjct: 180 GLGEMNPEQLWDTTMNPEHR 199


>gi|33187287|gb|AAP97506.1| DNA gyrase subunit B [Campylobacter jejuni]
          Length = 403

 Score =  247 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 165/417 (39%), Positives = 230/417 (55%), Gaps = 18/417 (4%)

Query: 136 TLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK 195
            LHAGGKFD  TY++SGGLHGVG+SVVNALS +L  TV R   I+ Q+FS G  +S    
Sbjct: 1   VLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGQVISEFGV 60

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
             K +   GT I F PD +IF     FD   L K  +  AYL+ ++   +  ++      
Sbjct: 61  IGKSKK-TGTTIEFWPDDQIFEVT-EFDYEILAKRFRELAYLNPKITINFKDNR------ 112

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI 315
            + + E F+F GG+  ++    +  +L  +  F+   E        VE A+ + +   E 
Sbjct: 113 -VGKYESFHFEGGISQFVTDLNKKEALTKAIFFSVDEED-----VNVEVALLYNDTYSEN 166

Query: 316 T-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSV 372
             S+ N   T +GGTHE+G R+ LTR I  Y E      ++   I  DD+    + ++SV
Sbjct: 167 LLSFVNNXKTPDGGTHEAGXRMGLTRVISNYIEANASAREKDNKITGDDVREGLIAVVSV 226

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
            + EP+F GQTK KL S   +  V  A  +    Y  +NPIEA  ++   +  +  R   
Sbjct: 227 KVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAA 286

Query: 433 RKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           +K RE   +K ++    LPGKLADC       +E+++VEGDSAGGSAKQ R RS QA+LP
Sbjct: 287 KKARELTRKKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILP 346

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           LRGKILNV  A  +KI  ++QI +++ A GC     +    LRY K+IIMTDADVDG
Sbjct: 347 LRGKILNVEKARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDG 403


>gi|237820995|ref|ZP_04596840.1| DNA gyrase subunit B [Streptococcus pneumoniae CCRI 1974M2]
          Length = 210

 Score =  247 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 76/209 (36%), Positives = 120/209 (57%), Gaps = 10/209 (4%)

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
            ++  RNR  QA+LP+RGKILNV  A  +KI  N++I  L  A+G    +++     RY+
Sbjct: 2   ISQSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGFGAEFDVSKARYQ 61

Query: 537 KVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHD-- 593
           K+++MTDADVDGAHI +LLLT  Y+ M  ++E  ++++  PP++ +  G++   Y     
Sbjct: 62  KLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQPPIYGVKVGSEIKEYIQPGA 121

Query: 594 EEH--KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651
           ++    Q+ L  +   G+ K  I R+KGLGEM   QL ET MD   R + RV ++     
Sbjct: 122 DQEIKLQEALARYS-EGRTKPTIQRYKGLGEMDDHQLWETTMDPEHRLMARVSVDD---- 176

Query: 652 LKDTQDSINKLMGTKADERFKFIQERASF 680
             +     + LMG + + R +FI+E A +
Sbjct: 177 AAEADKIFDMLMGDRVEPRREFIEENAVY 205


>gi|29652903|gb|AAO87421.1| DNA gyrase B [Listeria monocytogenes]
          Length = 205

 Score =  247 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 89/200 (44%), Positives = 122/200 (61%), Gaps = 2/200 (1%)

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 8   RKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILN 67

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 68  VEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTL 127

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+K
Sbjct: 128 FYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYK 185

Query: 619 GLGEMLASQLKETAMDANKR 638
           GLGEM   QL +T M+   R
Sbjct: 186 GLGEMNPEQLWDTTMNPEHR 205


>gi|119221381|gb|ABL61894.1| GyrB [uncultured bacterium]
          Length = 417

 Score =  247 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 156/425 (36%), Positives = 245/425 (57%), Gaps = 17/425 (4%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD++ Y++SGGLHGVG+SVVNALS+ L + + R   +++Q++  G P 
Sbjct: 1   EVIMTVLHAGGKFDDNAYKVSGGLHGVGVSVVNALSETLQLRIFRDGYVWTQEYHDGEPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+ +        G+ I F+P P++F D   F    + K  +  A+L+  V      ++ 
Sbjct: 61  APIAR-GDASRNHGSTIRFKPSPQVFADTH-FHFEIIAKRLRELAFLNSGVHITLLDERA 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       E F++ GG++ +++    +++ I   + T   E+ G     VE A+ W E
Sbjct: 119 SRE-------ETFHYEGGIRAFVEHLNRSKTAIHPSVITLTGERDGI---VVEAALQWNE 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR + +Y E      K  +++  +D      
Sbjct: 169 GYNEAVLCFTNNIPQADGGTHLAGFRGALTRTLNQYMEREGIIAKAKVAVSGEDAREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE+++ +    +L ++P EA  +   ++E + 
Sbjct: 229 AVLSVKVPDPKFSSQTKEKLVSSEVKPIVESSMSEALTMFLDEHPKEAQAIAAKIVEAAR 288

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   R+ RE   RK A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R +
Sbjct: 289 AREAARRARELTRRKGALDIANLPGKLADCQEKDPAQCEIYLVEGDSAGGSAKQGRDRRH 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +++ ++ +I  L+ ALG    +   +   LRY  VIIMTDAD
Sbjct: 349 QAILPLKGKILNVERARFDRMLSSDEIGTLITALGTGIGAGDFDVAKLRYHPVIIMTDAD 408

Query: 546 VDGAH 550
           VDG+H
Sbjct: 409 VDGSH 413


>gi|183987570|gb|ACC65775.1| topoisomerase II [Pleurotus citrinopileatus]
          Length = 709

 Score =  247 bits (629), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 114/563 (20%), Positives = 216/563 (38%), Gaps = 54/563 (9%)

Query: 154 LHGVGISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEK-VRNKRGTRITFR 210
            +G G  + N  S E  +  A       +SQ +++ +      K  K  RN+  TR+TF+
Sbjct: 1   RNGYGAKLANIYSLEFTIETADKVNEKKYSQTWTKNMTQVGKAKITKNSRNEEYTRVTFK 60

Query: 211 PDPKIFGDKAGFDAA--RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           P+   FG           L K     A     VK   + ++    K    ++    +   
Sbjct: 61  PELTRFGMTHIDPDTAGLLRKRVYDMAGTVKDVKVYLNDERL---KIKTFKQYVEMYIEA 117

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGG 328
                +      +     +   +           E A A  +   +  S+ N+I T +GG
Sbjct: 118 ATAGAKENSGGAAQAKPTVIYAQIS------PRWEVAFATSDGTFQQVSFANSISTIKGG 171

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           TH + +   L++ I  +       +A ++    +       ++  I  P F  QTK  L 
Sbjct: 172 THVNYIADQLSKSIIAHIAKKN--KAATVKPAQVKNHMWIFVNALIENPTFGSQTKETLT 229

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKL 447
               +     AL + F   + ++      +++ V+  ++ +  R+ ++   +++  +  +
Sbjct: 230 LPAGKFGSRPALSEEFMKKVQKSF-----IIDQVLNWAKFKADRQIKKTDGSKRNRLTGM 284

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGS 504
                  +     A    L   EGDSA   A        R N  V PLRGK+LNV  A  
Sbjct: 285 AKLSDANNAGTKNAEKCTLIHTEGDSAKSLAVAGLAVVGRDNFGVFPLRGKLLNVREARH 344

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           ++I  N++I ++ + +G +   +Y     LRY +++IMTD D DG+HI  LL+ F     
Sbjct: 345 DQIMKNEEIQNIKKIMGLQHNKEYTNVSSLRYGRLMIMTDQDHDGSHIKGLLINFLDHFY 404

Query: 564 YDLIEQK-HLFLISPPLFR-----------------ITQGTKSVYAHDEEHKQKILEEFK 605
             L++    L     P+ R                 +T+G +          +  LEE  
Sbjct: 405 PSLLKVPEFLVEFVTPIVRVSGLLVSSLMSLYTFVTVTKGNQRKNFFTIPEYETWLEETP 464

Query: 606 KHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT 665
                K     +KGLG    +  +E      K  +    +  +  +L     + +K    
Sbjct: 465 DS--KKWTAKYYKGLGTSSDADAREYFSQMGKHMIPFATMEDEERAL--IDLAFSK---K 517

Query: 666 KADERFKFIQE--RASFID-DVG 685
           KAD+R +++++    +++D ++ 
Sbjct: 518 KADDRKEWLRQFKPGTYLDHNID 540


>gi|269799122|gb|ACZ43839.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 370

 Score =  247 bits (629), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 127/381 (33%), Positives = 206/381 (54%), Gaps = 16/381 (4%)

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AG+   + V++  +G ++V D+GRGIPV+ H +    S  E+ILT LHAGGKFD+++Y++
Sbjct: 1   AGHCTDVVVTIHEDGSVSVSDDGRGIPVDIHEE-EGVSAAEVILTVLHAGGKFDDNSYKV 59

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS++L +T+ R   I  Q +  G P +P+     + +  GT + F 
Sbjct: 60  SGGLHGVGVSVVNALSEKLELTIHRHGHIHQQIYRHGEPQAPIAVIGDI-DTTGTELRFW 118

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F    L K  +  ++L+  V      ++E        + + F + GG+K
Sbjct: 119 PSHETFTNTL-FHYDILAKRLRELSFLNSGVSIKLIDERED------GKSDHFVYEGGIK 171

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            ++     N++ I+ + F    E++     TVE A+ W +     I  + N I   +GGT
Sbjct: 172 AFVDYLNVNKTPINKDAFHFSVERED--GITVEVAMQWNDGFQEGIYCFTNNIPQRDGGT 229

Query: 330 HESGLRVALTRGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           H +G R ALTR +  Y E     +  ++ +   DD       ++SV + +P+F+ QTK K
Sbjct: 230 HLAGFRGALTRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDK 289

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLRRRKQREVNRKTAIR 445
           LVS + +  VE A+ +    YL++NP EA+ ++  +I+ S      R+ +    RK A+ 
Sbjct: 290 LVSSEVKSAVEQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKAREMTRRKGALD 349

Query: 446 KLRLPGKLADCSQNIAHGTEL 466
              LPGKLADC +     +EL
Sbjct: 350 LAGLPGKLADCQEKDPALSEL 370


>gi|285013338|gb|ADC32657.1| DNA gyrase subunit B [Pantoea ananatis]
          Length = 405

 Score =  247 bits (629), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 155/416 (37%), Positives = 236/416 (56%), Gaps = 16/416 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKFD+++Y++SGGLHGVG+ VVNALS +L +T+ R+  +  Q +  G+P +PL    
Sbjct: 1   HAGGKFDDNSYKVSGGLHGVGVPVVNALSQKLELTIRREGKVHQQIYLHGVPEAPLAVTG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
              +  GTRI F P    F +   F+   L K  +  ++L+  V       ++       
Sbjct: 61  DT-DATGTRIRFWPSHDTFTNVTDFEYDILAKRLRELSFLNSGVSIRLEDKRDA------ 113

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
              + F++ GG++ +++   +N++ I   +F   TEK G     VE A+ W +     I 
Sbjct: 114 -RNDHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKDGI---GVEVALQWNDGFQENIY 169

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
            + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV +
Sbjct: 170 CFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKV 229

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRR 433
            +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+        RR
Sbjct: 230 PDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPGDAKIVVGKIIDAARAREAARR 289

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            +    RK A+    LPGKLADC +     +E+++VEGDSAGGSAKQ RNR NQA+LPL+
Sbjct: 290 AREMTRRKGALDLAGLPGKLADCQERDPALSEIYLVEGDSAGGSAKQGRNRKNQAILPLK 349

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDG 548
           GKIL+V  A  +K+  +Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG
Sbjct: 350 GKILSVEKARFDKMLASQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDG 405


>gi|330983691|gb|EGH81794.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 225

 Score =  247 bits (629), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 83/227 (36%), Positives = 130/227 (57%), Gaps = 5/227 (2%)

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +ELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN       ++  +Q++ ++  
Sbjct: 2   QDTTRSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEVHNIAV 61

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+G    S     +LRY K+ I+ DAD DG HIA+LL   F +    L+E  H+++  PP
Sbjct: 62  AIGVDPGSTDL-AELRYSKICILADADSDGLHIATLLCALFVRHFRSLVEAGHIYVAMPP 120

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK-IEISRFKGLGEMLASQLKETAMDANK 637
           L+R+  G +  YA DE  +  I+E      K    +++RFKGLGEM   QL+ET MD N 
Sbjct: 121 LYRVDLGKEIFYALDEGERDAIIERMTNGKKRGTPQVTRFKGLGEMNPGQLRETTMDPNT 180

Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           R L+++ ++    +          L   +A +R  +++++ +  + +
Sbjct: 181 RRLVQLTLDDVDLTHGVMDML---LAKKRAPDRKAWLEDKGNLAEVL 224


>gi|221110139|ref|XP_002163496.1| PREDICTED: similar to DNA topoisomerase 2 [Hydra magnipapillata]
          Length = 1315

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 131/704 (18%), Positives = 247/704 (35%), Gaps = 97/704 (13%)

Query: 29  IPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEK---------------- 72
                     +  D YD      +   + +   P  YIG T                   
Sbjct: 33  TKTKTNNRKLNVEDVYDG-----MTLHQHILSAPDTYIGTTTVDEVRMFIFDEDNNKIIE 87

Query: 73  -------ALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPK 123
                       F E++ NA D  +       I++++D + G +TV ++G GIPV  H K
Sbjct: 88  DVINYVAGFFKTFDEILVNARDHTVRDKTCKNIQITIDRDTGRITVWNDGNGIPVSIHKK 147

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTV---------- 173
           + N    E+I   L     +      + G     G  + N  S E  +            
Sbjct: 148 Y-NIYVPEMIFGNLLTSQNYGKKGKTVGGKNG-YGAKLCNIYSKEFEIHTIGVDKIKEVD 205

Query: 174 ------------ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK-- 219
                         + T  +  +  G P    +  +  +    T+I++ PD + +G    
Sbjct: 206 GKIVPDENAKKVEYRQTFKNNMYDVGKPDINKKISQSSKQF--TQISYIPDYEKYGMNGR 263

Query: 220 -AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
                 + L+K     A  +            I  +                 Y++    
Sbjct: 264 LTNDMYSLLVKRCYDIAACTPSTVNISVNGCNIKCRKFE-------------DYIRLYYS 310

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
           +      +I   K          + +     +      S+ N I T +GGTH S +   +
Sbjct: 311 DDPKEKPKITYEKV--NDRWEIGIGFNKNVGDRY---ISFVNGISTFQGGTHVSHVVNNV 365

Query: 339 TRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT--- 395
              +  + +  +  + + II   +       ++  + +P F  QTK  + S  A      
Sbjct: 366 VAKVTAFIKKKKEHKDLKIIPATIKQYLTFFINCVVEDPGFNSQTKEYMNSKVADWCTCG 425

Query: 396 --VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
              ++   +  D ++ +  +    L+  V+  S+ +  R   +   +K    K+      
Sbjct: 426 NMCKDVKCELSDEFIEK--LCGNGLMTEVVNMSKFKEMRDLDKTDGKKVGKLKIPKLKDA 483

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ---AVLPLRGKILNVASAGSEKIRNN 510
                  +  T +F  EGDSA        +   Q    V PLRGK+LNV +A +++I++N
Sbjct: 484 LWAGGKKSAKTSIFFTEGDSAQSFVIDGISVIGQERYGVFPLRGKLLNVRNATAKQIKSN 543

Query: 511 QQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE- 568
            + +++ + LG +   +Y++   LRY  VII+TD D DG+HI  L++        +L++ 
Sbjct: 544 TEFLNIKKILGLKQGVKYKDVSKLRYGSVIIITDQDPDGSHIKGLIINMLEYFWPELLQI 603

Query: 569 QKHLFLISPPLFRITQGT-------KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
              +   + P+ +  + T       K  Y+  E  K + +E          E   +KGLG
Sbjct: 604 DGFIKAYNTPIVKAWKKTDKKKASVKQFYSMSEFEKWRDVEMKGDIKGNGWEYKYYKGLG 663

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT 665
                + KE+  D +   L       + ++   T D ++  M  
Sbjct: 664 TSSNKESKESFKDFDN-NLTTFLWEHEDDNSVKTDDDVSLDMDK 706


>gi|29652745|gb|AAO87342.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652912|gb|AAO87425.1| DNA gyrase B [Listeria monocytogenes]
          Length = 196

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 89/196 (45%), Positives = 120/196 (61%), Gaps = 2/196 (1%)

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
            +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A
Sbjct: 3   GLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKA 62

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
             ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ 
Sbjct: 63  RLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRY 122

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
           M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+KGLGE
Sbjct: 123 MRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYKGLGE 180

Query: 623 MLASQLKETAMDANKR 638
           M   QL +T M+   R
Sbjct: 181 MNPEQLWDTTMNPEHR 196


>gi|29652887|gb|AAO87413.1| DNA gyrase B [Listeria monocytogenes]
          Length = 198

 Score =  246 bits (628), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 89/200 (44%), Positives = 122/200 (61%), Gaps = 2/200 (1%)

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 1   RKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILN 60

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 61  VEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTL 120

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+K
Sbjct: 121 FYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYK 178

Query: 619 GLGEMLASQLKETAMDANKR 638
           GLGEM   QL +T M+   R
Sbjct: 179 GLGEMNPEQLWDTTMNPEHR 198


>gi|148616482|gb|ABQ96984.1| GyrB [Nocardiopsis xinjiangensis]
          Length = 421

 Score =  246 bits (628), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 149/428 (34%), Positives = 229/428 (53%), Gaps = 11/428 (2%)

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
           +E+I+T LHAGGKFD+ +Y +SGGLHGVG+SVVNALS  L V + R   ++ Q++    P
Sbjct: 1   IEVIMTVLHAGGKFDDKSYAVSGGLHGVGVSVVNALSTALDVEIRRDGHVWRQRYDVTRP 60

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
                 + +  ++ GT+ITF PDP IF     F    L +  Q  A+L+  +      ++
Sbjct: 61  GEL--VRGEEVSETGTQITFWPDPDIFETIT-FSYETLSRRMQEMAFLNKGLSITIRDER 117

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS-SEIFTGKTEKKGTHRGTVEWAIAW 308
                   P    +++  GL  Y+      +     S I   +  +       ++W  ++
Sbjct: 118 -PEFIDDGPVVNTYHYVNGLSDYVNHINAKKEPAHASIISFEEEGEGIAAEIAMQWNQSY 176

Query: 309 CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISA 366
                 + ++ NTI T EGGTHE G R ALT  I +YA   +   ++  ++  DD+    
Sbjct: 177 T---SSVHTFANTINTAEGGTHEEGFRTALTALINRYARDQKLLREKEDNLTGDDIREGL 233

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIER 425
             I+SV + +P+F GQTKTKL + +A+  V+    +    +L +NP EA  ++ +     
Sbjct: 234 TAIISVKLTDPQFEGQTKTKLGNTEAKSFVQKVTNEHLRDWLERNPGEAKDIVSKASQAA 293

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
                 R+ +    RKT +    LPGKL+DC        E++IVEGDSAGGSAK  R+  
Sbjct: 294 RARVAARQARDLTRRKTLLETTSLPGKLSDCQSTNPEECEVYIVEGDSAGGSAKGGRDPH 353

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545
           +QA+LP+RGKILNV  +  ++I  N ++  ++ ALG      +    LRY K+I+MTDAD
Sbjct: 354 HQAILPIRGKILNVEKSRIDRILKNNEVQAIITALGTGIHEDFDASKLRYHKIILMTDAD 413

Query: 546 VDGAHIAS 553
           VDG+HI +
Sbjct: 414 VDGSHIRT 421


>gi|330983692|gb|EGH81795.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 268

 Score =  246 bits (628), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 107/277 (38%), Positives = 147/277 (53%), Gaps = 16/277 (5%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
              +  Y+A +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A  I
Sbjct: 2   TQMNATYNADAIEVLSGLDPVRKRPGMY---TDTTRPNHLAQEVIDNSVDEAMAGHAKSI 58

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V L  +  L V+D+GRG+PV+ HP+      +E+ILT LHAGGKF    Y+ SGGLHGV
Sbjct: 59  KVILHEDNSLEVIDDGRGMPVDIHPE-EGIPGVELILTKLHAGGKFSGKNYQFSGGLHGV 117

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIF 216
           GISVVNALS  + V V R  ++    F  G   S L+      +   GT + F PD K F
Sbjct: 118 GISVVNALSTRVDVEVTRGGSVHHIGFGDGFKSSDLKVIGSAPKRATGTSVRFWPDAKYF 177

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                F  +R+  + ++KA L   +   +       E  G  EK E++F  GL++YL   
Sbjct: 178 DT-PKFSISRMKHILKAKAVLCPGLAISF-------EDLGTGEKVEWHFEDGLRSYLNDA 229

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP 313
                 +  E F G           VEWA+ W +E  
Sbjct: 230 CGEVERLPEEPFVGALASDT---LAVEWALTWLQEGG 263


>gi|110612703|gb|ABG78314.1| GyrB [uncultured bacterium]
          Length = 408

 Score =  246 bits (628), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 165/420 (39%), Positives = 240/420 (57%), Gaps = 17/420 (4%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFDNS+Y++SGGLHGVG+SVVNALS+ L +TV     ++ Q +  G P +P++      
Sbjct: 1   GKFDNSSYKVSGGLHGVGVSVVNALSETLELTVRINGQVYEQLYKLGEPQAPIKVTGTTS 60

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
             RGT I F+P P IF     F    L K  +  ++L+  V+     +++        +K
Sbjct: 61  E-RGTEIRFKPSPTIFTQL-EFHYDILAKRLRELSFLNQGVQIELFDERD-------GKK 111

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
           + F++ GG+K ++Q     ++ I   +F    + KGT    VE A+ W +     I  + 
Sbjct: 112 DSFHYEGGIKAFVQYLNRKKTGIHPTVFYFSEDVKGTI---VELAMQWNDSYQETIFCFT 168

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH +G R ALTR +  Y E      K  IS   DD       +LSV + +P
Sbjct: 169 NNIPQRDGGTHLAGFRGALTRTLNNYIEKEGLAKKFKISTTGDDAREGLTAVLSVKVPDP 228

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQR 436
           +F+ QTK KLVS + +  VE  + + F+++L++ P EA  ++ + V         R+ + 
Sbjct: 229 KFSSQTKDKLVSSEVRAVVEGTVAEHFNNFLLEKPQEAKAIITKMVEAARAREAARKARE 288

Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              RK+A+    LPGKLADC +      E+ IVEGDSAGGSAKQ R+R  QA+LPLRGKI
Sbjct: 289 MTRRKSALDVAGLPGKLADCQERDPALCEILIVEGDSAGGSAKQGRSRKTQAILPLRGKI 348

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLL 555
           LNV  A  +K+ ++Q++  L+ ALGC   SQ    + LRY K+II+TDADVDG+HI +LL
Sbjct: 349 LNVEKARFDKMLSSQEVGVLITALGCGIGSQEFNADKLRYHKIIIITDADVDGSHIRTLL 408


>gi|29652713|gb|AAO87326.1| DNA gyrase B [Listeria monocytogenes]
          Length = 197

 Score =  246 bits (628), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 89/199 (44%), Positives = 122/199 (61%), Gaps = 2/199 (1%)

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV
Sbjct: 1   KSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNV 60

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
             A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT F
Sbjct: 61  EKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLF 120

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
           Y+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+KG
Sbjct: 121 YRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYKG 178

Query: 620 LGEMLASQLKETAMDANKR 638
           LGEM   QL +T M+   R
Sbjct: 179 LGEMNPEQLWDTTMNPEHR 197


>gi|307939320|gb|ADN95851.1| DNA gyrase B [Hymenobacter sp. VUG-A60a]
          Length = 434

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 170/438 (38%), Positives = 246/438 (56%), Gaps = 23/438 (5%)

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           +T LHAGG FD  +Y++SGGLHGVG+S VNALS +L VTV R   ++ Q++  G+P  P+
Sbjct: 3   MTVLHAGGXFDKDSYKVSGGLHGVGVSCVNALSKDLKVTVRRNGHLYEQEYKIGVPQYPV 62

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           ++        GT++ F PD  IF +   +    +    +  +YL+  ++   +  +   +
Sbjct: 63  KEIGDTEEH-GTQVEFLPDDTIFTESV-YKYETIATRLRELSYLNKGIRITLTD-RRDND 119

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP 313
             G    EEFY  GGL  ++      R+++  +     +EK GT    VE A+ + +   
Sbjct: 120 VDGNFLYEEFYSEGGLSEFVGYLDAGRTVLMPKPIHVISEKGGTP---VEVALQYNDSYQ 176

Query: 314 EI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGIL 370
           E   SY N I T EGGTH +G R ALTR +K YA+ +    K  + I  DD       ++
Sbjct: 177 EHIFSYVNNINTIEGGTHVAGFRSALTRTLKAYADKSGMLEKAKVEIQGDDFREGLTAVI 236

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV ++EP+F GQTKTKL + D    V  A+ +  + YL +NP EA  ++E VI  +  R+
Sbjct: 237 SVKVQEPQFEGQTKTKLGNSDVSGAVNQAVGEILNQYLEENPKEARIIVEKVILAARARI 296

Query: 431 RRRKQREVNRKTAIRKLRL-PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK RE+ ++  +      PGKLADCS++     EL++VEGDSAGG+AKQ RNR+ QA+
Sbjct: 297 AARKAREMVQRKTVLGSNSLPGKLADCSESDPKICELYLVEGDSAGGTAKQGRNRAFQAI 356

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY-------------REEDLRYE 536
           LPLRGKILNV  A   +I  N++I +++ ALG    +                   LRY 
Sbjct: 357 LPLRGKILNVEKAQEHRIYENEEIKNMITALGVSFGTPADLENGIEADPKGLNMTKLRYH 416

Query: 537 KVIIMTDADVDGAHIASL 554
           KVIIMTDA VDG+HI +L
Sbjct: 417 KVIIMTDAXVDGSHIRTL 434


>gi|119369928|gb|ABL67978.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 420

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 154/430 (35%), Positives = 228/430 (53%), Gaps = 15/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LH+GGKFD   Y++SGGLHGVG SVVNALS +L V V +   I  Q++ RG  +
Sbjct: 1   EVIMTVLHSGGKFDGGGYKVSGGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVV 60

Query: 191 SPL-EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
           +    +      + G   +    P+ F         ++ +     +    R        +
Sbjct: 61  AGSLGRWGY--RENGNNSSLHTRPRDFYRNNDLRFGQIKQTYSRISLFEPRTSNLHHDKR 118

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
           E  E     + + +++ GG+ +Y++   EN+ +I         E       TVE A+ + 
Sbjct: 119 EGLE-----QTKHYHYEGGIASYVEYINENKDVIFDTPIYTDGEMDDI---TVEVAMQYT 170

Query: 310 EENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISA 366
               E   S+ N I T EGGTHE G R ALTR I  YA   +  +    ++  +D+    
Sbjct: 171 TGYHENVMSFANNIHTHEGGTHEQGFRTALTRVINDYARKNKLLKDNEDNLTGEDVREGL 230

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIER 425
             ++SV    P+F GQTKTKL + +  +       D F  +L++NP  A +++E  ++  
Sbjct: 231 TAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSDAFSDFLMENPQIAKRIVEKGILAA 290

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
                 +R +    +K+ +    LPGKLADCS N    TELFIVEGDSAGGSAK  RNR 
Sbjct: 291 KARVAAKRAREVTRKKSGLEISNLPGKLADCSSNNPAETELFIVEGDSAGGSAKSGRNRE 350

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545
            QA+LP+RGKILNV  A  +KI  N++I  L  A+G    +++     RY+K+++MTDAD
Sbjct: 351 FQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGFGAEFDVTKARYQKLVLMTDAD 410

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 411 VDGSHIRTLL 420


>gi|312271578|gb|ADQ56144.1| DNA gyrase subunit B [Vibrio sp. SA0706-05S]
          Length = 373

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 130/384 (33%), Positives = 209/384 (54%), Gaps = 15/384 (3%)

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+   I V++  +  ++V D+GRGIP E H +  N S  E+I+T LHAGGKFD+++Y++S
Sbjct: 1   GHCKDIVVTIHEDNSVSVSDDGRGIPTEIHSE-ENVSAAEVIMTVLHAGGKFDDNSYKVS 59

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K GT+I F P
Sbjct: 60  GGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKTGTQIRFWP 118

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++E        +++ F + GG++ 
Sbjct: 119 SAETFSN-TEFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KQDHFMYEGGIQA 171

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++Q    N++ I  +IF    E++     +VE A+ W +     I  + N I   +GGTH
Sbjct: 172 FVQHLNTNKTPIIEKIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNNIPQRDGGTH 229

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QTK KLV
Sbjct: 230 LAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 289

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE+A+ +    +LV+NP EA  +   +I+        R+ +    RK A+   
Sbjct: 290 SSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLA 349

Query: 448 RLPGKLADCSQNIAHGTELFIVEG 471
            LPGKLADC +     +EL+IVEG
Sbjct: 350 GLPGKLADCQEKDPALSELYIVEG 373


>gi|110612653|gb|ABG78289.1| GyrB [uncultured bacterium]
          Length = 406

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 159/418 (38%), Positives = 248/418 (59%), Gaps = 17/418 (4%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD+++Y++SGGLHGVG+SVVNALS+ELH+ + R   ++ Q +  G+P +PL    +  N 
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSEELHLLIKRHGKVYEQHYHHGVPDAPLAVTGEA-NA 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT++ F+P  + F +   F    L K  +  ++L+  V      ++         +++ 
Sbjct: 60  TGTQVWFKPSAQTFTNI-EFHYDILAKRLRELSFLNSGVGILLFDER-------TNKQDT 111

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           F + GG+K +++    N++ I   +F+   EK      +VE A+ W +     I  + N 
Sbjct: 112 FRYEGGIKAFVEHLNRNKTPIIPSVFSMSGEKDNI---SVELALQWNDSYQENIFCFTNN 168

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +GLR ALTR +  Y E      K  ++   DD       +LSV + +P+F
Sbjct: 169 IPQRDGGTHLAGLRSALTRTLNNYIENEGHAKKAKVTTTGDDAREGLTAVLSVKVPDPKF 228

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN 439
           + QTK KLVS + +  VE+ + +  + YL++NP  A  ++  +IE +  R   R+ R++ 
Sbjct: 229 SPQTKDKLVSSEVKSVVESLVAEKLNDYLLENPTVAKTIVGKIIEAARAREAARRARDMA 288

Query: 440 R-KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
           R K+A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ R+R  QA+LPL+GKILN
Sbjct: 289 RRKSALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRDRKFQAILPLKGKILN 348

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLL 555
           V  A  +K+ ++Q++  L+ ALGC T   +Y  + +RY ++IIMTDADVDG+HI +LL
Sbjct: 349 VEKARFDKMLSSQEVATLITALGCGTGSDEYDPDKIRYHRIIIMTDADVDGSHIRTLL 406


>gi|213391520|gb|ACJ46501.1| gyrase B subunit [Pseudoalteromonas sp. BSw20607]
          Length = 423

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 158/419 (37%), Positives = 242/419 (57%), Gaps = 16/419 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKFD+++Y++SGGLHGVG+SVVNALS++L +TV R+  +  Q ++ G+P +PL    
Sbjct: 8   HAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKLTVRREGKLHEQFYTMGVPDAPLAVIG 67

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
                 GT + F P  + F +   F    L K  +  ++L+  V    + ++E       
Sbjct: 68  D-SETTGTELRFWPSAETFTN-LDFHYDILAKRLRELSFLNSGVSIILNDERE------E 119

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
            + + F + GG++ +++    N++ I   +F    E++     +VE ++ W +     I 
Sbjct: 120 NKSDHFKYEGGIQAFVEYLNRNKTPIHKGVFHFTHERE-EDGISVEVSMQWNDAYQENIY 178

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYA----ELTQNKRAISIISDDLMISAVGILSV 372
            + N I   +GGTH +G R ALTR +  Y        + K   +   DD       ++SV
Sbjct: 179 CFTNNIPQRDGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSV 238

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLR 431
            + +P+F+ QTK KLVS + +  VE A+ + F  +L++NP +A  ++  +I+ S      
Sbjct: 239 KVPDPKFSSQTKDKLVSSEVKSAVEQAMAEKFTEFLLENPTDAKIVVGKIIDASRAREAA 298

Query: 432 RRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LP
Sbjct: 299 RKAREMTRRKGAMDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILP 358

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGA 549
           L+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  E LRY ++IIMTDADVDGA
Sbjct: 359 LKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPEKLRYHRIIIMTDADVDGA 417


>gi|2853303|gb|AAC38147.1| gyrase B subunit [Vibrio parahaemolyticus]
          Length = 419

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 158/423 (37%), Positives = 241/423 (56%), Gaps = 15/423 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPE 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL       +K GT+I F P  + F +   F    L K  +  ++L+  V      ++E
Sbjct: 61  TPLAVVGDA-DKTGTQIRFWPSAETFSN-TEFHYDILAKRLRELSFLNSGVSIKLIDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   +++ F + GG++ ++Q    N++ I  +IF    E++     +VE A+ W +
Sbjct: 119 AD------KQDHFMYEGGIQAFVQHLNTNKTPIIEKIFHFDLERED--GISVEVAMQWND 170

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R A+TR +  + +      K   +   DD      
Sbjct: 171 GFQENIFCFTNNIPQRDGGTHLAGFRAAITRTLNSFMDKEGFSKKAKTATSGDDAREGLT 230

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +LV+NP EA  +   +I+   
Sbjct: 231 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAAR 290

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR N
Sbjct: 291 AREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKN 350

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC           LRY  +IIMTDAD
Sbjct: 351 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEHNPDKLRYHNIIIMTDAD 410

Query: 546 VDG 548
           V+ 
Sbjct: 411 VEA 413


>gi|29652791|gb|AAO87365.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652863|gb|AAO87401.1| DNA gyrase B [Listeria monocytogenes]
          Length = 193

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 89/195 (45%), Positives = 120/195 (61%), Gaps = 2/195 (1%)

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A 
Sbjct: 1   LEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKAR 60

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ M
Sbjct: 61  LDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYM 120

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
             L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+KGLGEM
Sbjct: 121 RPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYKGLGEM 178

Query: 624 LASQLKETAMDANKR 638
              QL +T M+   R
Sbjct: 179 NPEQLWDTTMNPEHR 193


>gi|148971391|gb|ABR20233.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 424

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 153/431 (35%), Positives = 234/431 (54%), Gaps = 13/431 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD  TY++SGGLHGVG+S VNALS  L V V +    ++  F+RG  +
Sbjct: 1   EVIMTVLHAGGKFDKDTYKVSGGLHGVGVSCVNALSKALDVNVCKGGHEYTISFARGKVV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL+K  + +  RGT ++F PD +IF     +D   +    +  A+L+  ++  +  ++ 
Sbjct: 61  APLKKLGESKK-RGTTVSFIPDEQIFSV-TTYDYETIYNRLRELAFLNKGLEIIFKDERN 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWC 309
                 +     F   GG+ +++Q   E ++ +  +    K  K+        E A+ W 
Sbjct: 119 TDHAEAV-----FNAEGGIVSFVQFLNETKTPLFQDPIYIKGTKELHDGTLEFEVAMQWN 173

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISA 366
           E     + SY N I T +GGTH +G   ALTR +  Y +     +        DD+    
Sbjct: 174 ETYTETVFSYVNNIATRQGGTHLTGFSTALTRVLNSYIKNHNLLKNAKTPITGDDVREGM 233

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             I+S  +  P+F GQTK KL + D     +  + + F  YL ++P  A  +++     +
Sbjct: 234 AAIISAKVPNPQFEGQTKQKLGNGDVGSAAQQIVGEEFATYLEEHPSIAKIIVDKAALAA 293

Query: 427 EERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
           + R   RK RE+ ++ + +   RLPGKL DCS+      E++IV GDSAGGSAK  R+R 
Sbjct: 294 QAREAARKARELTQRKSVLDSARLPGKLTDCSERRPSEMEIYIVGGDSAGGSAKGGRDRR 353

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDA 544
            QA+LP+RGKILNV  +  +K+  N ++  ++ A GC         E LRY K+I+MTDA
Sbjct: 354 FQAILPIRGKILNVEKSRLQKVLQNTEVGSMISAFGCGIGKDGFNLEKLRYHKIILMTDA 413

Query: 545 DVDGAHIASLL 555
           DVDG+HI +LL
Sbjct: 414 DVDGSHIRTLL 424


>gi|307939306|gb|ADN95844.1| DNA gyrase B [Hymenobacter antarcticus]
          Length = 437

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 169/443 (38%), Positives = 250/443 (56%), Gaps = 27/443 (6%)

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           +T LHAGGKFD  +Y++SGGLHGVG+  VNALS +L VTV R    + Q++  GIP   +
Sbjct: 1   MTVLHAGGKFDKGSYKVSGGLHGVGVXCVNALSTDLKVTVRRNGHKYEQEYKIGIPQYDV 60

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           ++   +  + GT + F PD  IF +   +    +    +  +YL+  ++   +  +E  E
Sbjct: 61  KEVG-LSEEHGTEVQFLPDATIFTE-TEYRYDTVAGRLRDLSYLNKGIRITLTDRREKLE 118

Query: 254 KYGIPEKEEFYFPGGLKTYLQT-KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
             G+   EEFY  GGL+ ++Q    E R  + SE    ++EK GT    VE A+ +    
Sbjct: 119 -GGVFRGEEFYSTGGLRDFVQYLDGEQRPSLLSEPIYVESEKGGTP---VEVALQYNTSY 174

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGI 369
              + SY N I T EGGTH +G R A+TR +K Y +  +   K  + I  DD       +
Sbjct: 175 QENVYSYVNNINTIEGGTHVAGFRSAVTRVLKTYGDKNKLFEKAKVEITGDDFREGLTAV 234

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           +SV ++EP+F GQTKTKL + +    V + + +    YL +NP +A +++E VI  ++ R
Sbjct: 235 ISVKVQEPQFEGQTKTKLGNSEVSGAVNSVVGEILTQYLDENPNQANRIMEKVILAAKAR 294

Query: 430 LRRRKQREVNRKTAIRKLRL-PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
           +  RK +++ ++  +      PGKLADCS++     EL++VEGDSAGG+AKQ RNR+ QA
Sbjct: 295 IAARKAKDMVQRKGVLSSNSLPGKLADCSESDPEICELYLVEGDSAGGTAKQGRNRAFQA 354

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY----------------REED 532
           +LPLRGKILNV  A   +I  N++I +++ ALG     +                     
Sbjct: 355 ILPLRGKILNVEKAQEHRILENEEIKNMITALGVSFNERKSLAFTTDDDGTESGPLNFSK 414

Query: 533 LRYEKVIIMTDADVDGAHIASLL 555
           LRY KVIIMT ADVDG+HI +LL
Sbjct: 415 LRYHKVIIMTXADVDGSHIRTLL 437


>gi|226429004|gb|ACO55122.1| DNA gyrase [Allochromatium vinosum]
          Length = 280

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 105/284 (36%), Positives = 160/284 (56%), Gaps = 14/284 (4%)

Query: 77  LFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTT 136
           +  EV+DN++DE +AGY N + V+L  +G ++V+D+GRGIPV+ H +  N+S  E+ILT 
Sbjct: 1   MVFEVVDNSIDEALAGYCNTVSVTLHTDGSVSVLDDGRGIPVDIHAE-ENRSAAEVILTV 59

Query: 137 LHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK 196
           LHAGGKFD+++Y++SGGLHGVG+SVVNALSD L + + R   I  Q++S G+P  PL+  
Sbjct: 60  LHAGGKFDDNSYKVSGGLHGVGVSVVNALSDRLLLRIYRNGQIHEQEYSLGVPQYPLKVI 119

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
            +     GT I F P P+IF +   F    L K  +  ++L+  V+   + +        
Sbjct: 120 GETT-ATGTEIRFHPSPEIFTN-LEFHYDILAKRLRELSFLNSGVRIALTDE-------A 170

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
               + F + GG++ +++   +N+  I   +    TE++      VE AI W       I
Sbjct: 171 SGRHDVFEYEGGIRAFVENLNQNKEAIHPTVVYFSTERQDI---GVELAIQWNNSYQETI 227

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359
             Y NTI   +GGTH +GLR ALTR +  Y E     +   +  
Sbjct: 228 FCYTNTIPQRDGGTHLAGLRAALTRTLNGYIEREGLDKNQKVRP 271


>gi|29652677|gb|AAO87308.1| DNA gyrase B [Listeria monocytogenes]
          Length = 192

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 90/194 (46%), Positives = 120/194 (61%), Gaps = 2/194 (1%)

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  +
Sbjct: 1   ISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLD 60

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           +I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ M  
Sbjct: 61  RILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRP 120

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+KGLGEM  
Sbjct: 121 LLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYKGLGEMNP 178

Query: 626 SQLKETAMDANKRT 639
            QL +T M+   RT
Sbjct: 179 EQLWDTTMNPEHRT 192


>gi|119369914|gb|ABL67971.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 159/430 (36%), Positives = 231/430 (53%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKF  S+Y++SGGLHGVG+SVVNALSD L + + R   +  Q++  G PL
Sbjct: 1   EVIMTVLHAGGKFGASSYKVSGGLHGVGVSVVNALSDYLLLIIHRDGKVHRQEYRLGDPL 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL        +RGT I F+P  +IF     F+   L K  +  ++L+  V+     ++E
Sbjct: 61  APLAPVGP-SEQRGTTIRFKPSAQIF-THIQFNHDILAKRLRELSFLNSGVRIELIDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                     + F   GGL+ +++    +R+ +   I   KT+       T++ A+ W +
Sbjct: 119 NT-------SDVFQHEGGLQAFVKYLNRSRTPVHESIPWFKTQDGPV---TIKVALQWND 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMISAV 367
                +  Y N I   +GGTH +G R ALTR +  Y   E++  K  +    DD      
Sbjct: 169 SYQESMFCYTNNIPQKDGGTHLAGFRSALTRTLNDYIEKEMSAKKDKVPTTGDDAREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERS 426
            ILSV + +P+F+ QTK KLVS + +  VE A+      + +                  
Sbjct: 229 AILSVKLPDPKFSSQTKDKLVSSEVKGIVEAAVSASCRIFCLSTRRTPKPSSPRCSRRPR 288

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +E+FIVEGDSA GSAKQ R+R  
Sbjct: 289 AREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSEIFIVEGDSADGSAKQGRDRRT 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++ ++  L+ ALGC       +   LRY +VIIMTDAD
Sbjct: 349 QAILPLKGKILNVEKARFDKMLSSAEVGTLITALGCGIGKDDFDLAKLRYHRVIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|148470192|gb|ABQ66044.1| gyrase b [uncultured bacterium]
          Length = 420

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 150/430 (34%), Positives = 238/430 (55%), Gaps = 15/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I T LHAGGKFD ++Y++SGGLHGVG+SVVNALS +  + + R+  ++ Q++  G P 
Sbjct: 1   EVIKTVLHAGGKFDENSYKVSGGLHGVGVSVVNALSTKQTLAIRREGELWEQEYHCGDPE 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+  K   +   GT + FRPDP++      F      K  +  AYL+  +    + ++ 
Sbjct: 61  APIAAKGPAKG-TGTTVHFRPDPEVLKV-PSFLLHAWKKRFRELAYLNDGLTILLNDERG 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             ++ G+     +++ GG+  ++    ++R  +   +   K ++ G     V+ AI W +
Sbjct: 119 DRKREGV-----YHYEGGVAAFVLDINKSREAVHPTVIRIKGDRDGVM---VDTAIQWND 170

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R A+TR +  Y E      K  ++I + D+     
Sbjct: 171 GYNESVFPFTNNIPQADGGTHLTGFRSAMTRVLGGYMEREGIATKAKVTIDAADMREGMT 230

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERS 426
            +LSV + +P+F+ QTK KLVS + +  VE+ + +    +L + P EA  +   ++    
Sbjct: 231 AVLSVKVPDPKFSSQTKDKLVSSEVRPIVESVIAEGVGTFLDEKPKEAQAICAKIVEAAK 290

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R  
Sbjct: 291 AREAARKARDITRRKGALDIANLPGKLADCQEKDPALCEIYLVEGDSAGGSAKQGRDRKF 350

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +++  + +I  L+ ALG            LRY ++IIMTDAD
Sbjct: 351 QAILPLKGKILNVERARFDRMLESDEIGTLITALGTGIGQDEFNAGKLRYHRIIIMTDAD 410

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 411 VDGSHIRTLL 420


>gi|33187339|gb|AAP97532.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni]
          Length = 402

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 166/416 (39%), Positives = 230/416 (55%), Gaps = 18/416 (4%)

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           LT LHAGGKFD  TY++SGGLHGVG+SVVNALS +L  TV R   I+ Q+FS G  +S  
Sbjct: 1   LTVLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEF 60

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
               K +   GT I F PD +IF     FD   L K  +  AYL+ ++   +  ++    
Sbjct: 61  GVIGKSKK-TGTTIEFWPDDQIFEVT-EFDYEILAKRFRELAYLNPKITINFKDNR---- 114

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP 313
              + + E F+F GG+  ++    +  +L  +  F+   E        VE A+ + +   
Sbjct: 115 ---VGKHESFHFEGGISQFVTDLNKKEALTKAIFFSVDEED-----VNVEVALLYNDTYS 166

Query: 314 EIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
           E   S+ N I T +GGTHE+G R+ LTR I  Y E      ++   I  DD+    + I+
Sbjct: 167 ENLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGDDVREGLIAIV 226

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV + EP+F GQTK KL S   +  V  A  +    Y  +NPIEA  ++   +  +  R 
Sbjct: 227 SVKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGRE 286

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             +K RE   +K ++    LPGKLADC       +E+++VEGDSAGGSAKQ R RS QA+
Sbjct: 287 AAKKARELTRKKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAI 346

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545
           LPLRGKILNV  A  +KI  ++QI +++ A GC     +    LRY K+IIMTDAD
Sbjct: 347 LPLRGKILNVEKARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDAD 402


>gi|328349715|emb|CBY89165.1| GyrB protein [Flavobacterium sp. R-40949]
          Length = 427

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 167/433 (38%), Positives = 240/433 (55%), Gaps = 16/433 (3%)

Query: 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA-RQ 176
           V  H K    S L++++T + AGGKFD  +Y++SGGLHGVG+SVVNALS+ L  TV    
Sbjct: 1   VGIHKK-EGVSALQVVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSD 59

Query: 177 NTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAY 236
             ++ Q++ +G  L P++   +    RGT +TF PDP IF     +    L    +  +Y
Sbjct: 60  GKVYEQEYEKGKALYPVKVIGETSK-RGTIVTFYPDPSIFTQTVDYSYDTLSARMRELSY 118

Query: 237 LSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG 296
           L+  +   ++  +E  +K G    E F+   GLK Y++    NR  I + + +  +EK  
Sbjct: 119 LNKGITITFTDKRE-VDKDGNFVSEIFHSTEGLKEYIRYLDGNREPIIAHVISMDSEK-- 175

Query: 297 THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KR 353
                VE A+ +       I SY N I T EGGTH  G R  LTR +KKYA+ +    K 
Sbjct: 176 -GEIPVEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADSSGMLDKL 234

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
              I  DD       I+SV + EP+F GQTKTKL + +    V  A+ D  + YL +NP 
Sbjct: 235 KFDISGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVVSPVSQAVGDMIEAYLEENPN 294

Query: 414 EATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
           +A  +++ VI  ++ R   +K RE+  RKT +    LPGKL+DCS+      E+++VEGD
Sbjct: 295 DARIIVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGD 354

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY---- 528
           SAGG+AKQ R+R+ QA+LPLRGKILNV  A   K+  N++I ++  ALG    ++     
Sbjct: 355 SAGGTAKQGRDRAFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTIGTEEDSKA 414

Query: 529 -REEDLRYEKVII 540
                LRY KVII
Sbjct: 415 LNISKLRYHKVII 427


>gi|309804841|ref|ZP_07698903.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus iners LactinV 09V1-c]
 gi|308165780|gb|EFO68001.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus iners LactinV 09V1-c]
          Length = 240

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 95/222 (42%), Positives = 138/222 (62%), Gaps = 2/222 (0%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A   +  ++ Y+AS I++L GLE VR RPGMYIG T  + LHHL  E+IDN++DE +AG+
Sbjct: 11  ALNFEKRAEKYNASQIQVLGGLEAVRKRPGMYIGNTSIQGLHHLVWEIIDNSIDEKLAGF 70

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A  IE++++ +G +TV D+GRGIPV+   K   +S LE + T LHAGGKF    Y++SGG
Sbjct: 71  ATKIEITVNEDGSVTVEDDGRGIPVDIQKK-TGRSALETVFTVLHAGGKFGGGGYKVSGG 129

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPD 212
           LHGVG SVVNALS +L+V V R    +   F+ G     + +  +V   + GT + F PD
Sbjct: 130 LHGVGASVVNALSTKLNVIVMRDGKKYCIDFNHGRVEQEVHEVGEVPLTQHGTIVRFYPD 189

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
           P IF +   FD   L    +  A+L+  +K  ++  ++I +K
Sbjct: 190 PDIFTETTVFDDRILKNRIRELAFLNKGLKLTFTDKRKIQQK 231


>gi|295979563|dbj|BAJ07454.1| DNA gyrase subunit B [Porphyrobacter sp. MBIC3897]
          Length = 321

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 109/330 (33%), Positives = 171/330 (51%), Gaps = 27/330 (8%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV DNA+DE +AG+ +L+ + L+ +G ++V DNGRGIP   H +   
Sbjct: 1   DTDDGSGLHHMVFEVSDNAIDEALAGHCDLVLIELNPDGSVSVEDNGRGIPTGMHSE-EG 59

Query: 127 KSTLEIILTTLHAGGKF----DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
            S  E+I+T LHAGGKF    D++ Y++SGGLHGVG+SVVNALS+ L +T+ R+      
Sbjct: 60  VSAAEVIMTQLHAGGKFENTSDDNAYKVSGGLHGVGVSVVNALSEWLELTIWREGKEHWM 119

Query: 183 KFSRGIPLSPLEKKEKVRN----------KRGTRITFRPDPKIFGDKAGFDAARLLKMTQ 232
           +F  G  ++PLE K               K+GTR+TF+     F +   FD  +L    +
Sbjct: 120 RFEHGDAVAPLEVKGDAPRSDRNADANGFKKGTRVTFKASHDTFKNVTEFDFEKLEHRYR 179

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             A+L+  V+      +            + Y+ GG+  +++    N+  +  E      
Sbjct: 180 ELAFLNSGVRIKLRDKRHEDVVEH-----DLYYEGGIAAFVKYLDRNKQALIPEPIAVSA 234

Query: 293 EKKGT-HRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ- 350
           EK G      +EW  ++      + ++ N I   +GGTH S  R ALTR +  YAE +  
Sbjct: 235 EKDGIGIDVALEWNDSY---YENVLAFTNNIPQRDGGTHLSAFRAALTRTLNNYAERSGM 291

Query: 351 -NKRAISIISDDLMISAVGILSVFIREPEF 379
             K  +S+  +D+      I+SV + +P+F
Sbjct: 292 LKKEKVSLSGEDMREGLTAIVSVKLPDPKF 321


>gi|2905608|gb|AAC03529.1| gyrase subunit B [Shewanella oneidensis]
          Length = 419

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 155/423 (36%), Positives = 242/423 (57%), Gaps = 16/423 (3%)

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           II+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L +T+ R   +  Q ++ G+P +
Sbjct: 3   IIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLQLTIRRDGKVHEQFYTHGVPDA 62

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
           P+++        GT I F P  + F D   F    L K  +  ++L+  V      +++ 
Sbjct: 63  PIKEIGDATK-TGTEIRFWPSEQTFSD-VEFHFEILAKRVRKLSFLNSGVGIRLIHERDN 120

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
                  + E F +  G+  +++    N++ ++ ++F    E+      TVE A+ W + 
Sbjct: 121 -------KNEFFKYQSGISAFVEYLNRNKTPVNKDVFHFMQERDD--GITVEVAMQWNDG 171

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVG 368
               I  + N I   +GGTH +G R ALTR +  Y E      K   +   DD       
Sbjct: 172 YQENIFCFTNNIPQRDGGTHLAGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLTA 231

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER-SE 427
           ++SV + +P+F+ QTK KLVS + +  VE  + +  + YL++NP +A  ++  +++    
Sbjct: 232 VISVKVPDPKFSSQTKDKLVSSEVKAAVEQTMGEKLNDYLLENPADAKLIVGKIVDAPRA 291

Query: 428 ERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
               R+ + +  RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR NQ
Sbjct: 292 REAARKAREKTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQ 351

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADV 546
           A+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  +  RY  +IIMTDA+V
Sbjct: 352 AILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKTRYHNIIIMTDAEV 411

Query: 547 DGA 549
           DG+
Sbjct: 412 DGS 414


>gi|148470190|gb|ABQ66043.1| gyrase b [uncultured bacterium]
          Length = 419

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 161/431 (37%), Positives = 237/431 (54%), Gaps = 18/431 (4%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD S+Y++SGGLHGVG+SV NALSD L + + R   +  Q++  G PL
Sbjct: 1   EVIMTVLHAGGKFDASSYKVSGGLHGVGVSVDNALSDYLLLIIHRDGKVHRQEYRLGDPL 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL        +RGT I F+P  +IF     F+   L K  +  ++L+  V+     ++E
Sbjct: 61  APLAPVGP-SEQRGTTIRFKPSAQIF-THIQFNHDILAKRLRELSFLNSGVRIELIDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTK-LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
                     + F   GGL+ + +     +R+ +   I   KT+       T+E A+ W 
Sbjct: 119 NT-------SDVFQHEGGLQAFREKYLNRSRTPVHESIPWFKTQD---GPETIEVALQWN 168

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMISA 366
           +     +  Y N I   +GGTH +G R A TR +  Y   E++  K  +    DD     
Sbjct: 169 DSYQESMFCYTNNIPQKDGGTHLAGFRSAQTRTLNDYIEKEMSAKKDKVPTTGDDAREGL 228

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ER 425
             ILS  + +P+F+ Q K KLVS + +  VE A       +L+++P +A  ++  ++   
Sbjct: 229 TAILSEKLPDPKFSSQAKDKLVSSEVKGIVEAAESAKLQDFLLEHPQDAKAIIAKMLEAA 288

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
                 R+ +    RK A+    LPGKLADC +     +E+FIVEGDSAGGSAKQ R+R 
Sbjct: 289 RAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSEIFIVEGDSAGGSAKQGRDRR 348

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDA 544
            QA+LPL+GKILNV  A  +K+ ++ ++  L+ ALGC       +   LRY +VIIMTDA
Sbjct: 349 TQAILPLKGKILNVEKARFDKMLSSAEVGTLITALGCGIGKDDFDLAKLRYHRVIIMTDA 408

Query: 545 DVDGAHIASLL 555
           DVDG+HI +LL
Sbjct: 409 DVDGSHIRTLL 419


>gi|269799088|gb|ACZ43822.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 371

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 128/382 (33%), Positives = 208/382 (54%), Gaps = 16/382 (4%)

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AG+   I V++  +G ++V D+GRGIPV+ H +    S  E+ILT LHAGGKFD+++Y++
Sbjct: 1   AGHCTDIVVTIHDDGSVSVSDDGRGIPVDIHEE-EGVSAAEVILTVLHAGGKFDDNSYKV 59

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS++L +T+ R   I +Q +  G+P  P+ +   V +  GT + F 
Sbjct: 60  SGGLHGVGVSVVNALSEKLELTIFRHGKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFW 118

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F    L K  +  ++L+  V      ++E        + + F + GG+K
Sbjct: 119 PSHETFTNTL-FHYDILAKRLRELSFLNSGVSIKLIDERED------GKSDHFVYEGGIK 171

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            ++     N++ I+ + F    E++     TVE A+ W +     I  + N I   +GGT
Sbjct: 172 AFVDYLNVNKTPINKDAFHFSAERED--GITVEVAMQWNDGFQEGIYCFTNNIPQRDGGT 229

Query: 330 HESGLRVALTRGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           H +G R ALTR +  Y E     +  ++ +   DD       ++SV + +P+F+ QTK K
Sbjct: 230 HLAGFRGALTRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDK 289

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIR 445
           LVS + +  VE A+ +    YL++NP EA+ ++  +I+        R+ +    RK A+ 
Sbjct: 290 LVSSEVKSAVEQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKARDMTRRKGALD 349

Query: 446 KLRLPGKLADCSQNIAHGTELF 467
              LPGKLADC +     +EL+
Sbjct: 350 LAGLPGKLADCQEKDPALSELY 371


>gi|148470240|gb|ABQ66067.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 162/430 (37%), Positives = 246/430 (57%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD++TY++SGGLHGVG+SVVNALS+ L + + R  T++ Q++  G PL
Sbjct: 1   EVIMTVLHAGGKFDDNTYKVSGGLHGVGVSVVNALSEHLLLRIRRAGTLYEQEYEMGNPL 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            P+   E      GT + F P P IF D   FD   + +  +  ++L+  +K     +++
Sbjct: 61  YPIRPVEACEG-TGTEVRFLPSPHIFTD-TRFDYDTIARRLKEISFLNSNIKIYLRDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E         F+  GG++ +++    NR+ +   +F    E+ G     VE A+ W  
Sbjct: 119 EREDL-------FWAEGGIRAFVEYLNRNRTPLHPTVFHCNVEEGGI---GVEIALQWTR 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                +  + N +   +GGTH +G R ALTR +  + E +    +  +    DD      
Sbjct: 169 SYQETVFCFTNNVPQRDGGTHLTGFRSALTRTLTGFLEESGAAKREKVQATGDDAREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LS+ + +P+F+ QTK KLVS + +  VE  L +   ++L ++P +  ++ E ++E + 
Sbjct: 229 AVLSLKVPDPKFSSQTKDKLVSSEVKPVVEGVLAERLKNFLWEHPRKPGQIAEKMLEAAR 288

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   R+ RE   RK A+    LPGKLADC +      ELF+VEGDSAGGSAKQAR+R  
Sbjct: 289 AREAARRARELTRRKGALDVAGLPGKLADCQEKDPALCELFLVEGDSAGGSAKQARDRRF 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDAD 545
           QA+LPL+GKI+NV  A  E++ ++ +I  L+ ALGC           LRY ++IIMTDAD
Sbjct: 349 QAILPLKGKIINVEKASFERVLSSGEIAALITALGCGIGKDDFHVSRLRYHRIIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIHTLL 418


>gi|18157440|dbj|BAB83772.1| DNA gyrase subunit B [Rhodobacter blasticus]
          Length = 317

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 106/325 (32%), Positives = 167/325 (51%), Gaps = 23/325 (7%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DN +DE +AG+A  + V +  +  ++V DNGRGIPV+ H +   
Sbjct: 1   DTDDGSGLHHMVYEVVDNGIDEALAGHATDVAVIIHADDSVSVRDNGRGIPVDIHHE-EG 59

Query: 127 KSTLEIILTTLHAGGKFDN-----STYEISGGLHGVGISVVNALSDELHVTVARQNTIFS 181
            S  E+I+T LHAGGKF+N     + Y++SGGLHGVG+SVVNALS+ L +TV R  T + 
Sbjct: 60  VSAAEVIMTQLHAGGKFNNTDDSGNAYKVSGGLHGVGVSVVNALSEWLELTVWRDETEYR 119

Query: 182 QKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI-----FGDKAGFDAARLLKMTQSKAY 236
            +F  G  +  +        KRGT++ F    K+           +    L    +  A+
Sbjct: 120 ARFEDGECVVHVYPVGPAPGKRGTQVRFLASAKVNRPDGTFSNLDYSFKTLENRLRELAF 179

Query: 237 LSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG 296
           L+  V+     ++     +  P++ E ++ GG++ +++    ++S I SE      E+ G
Sbjct: 180 LNSGVRIVLEDER-----HAEPQRVELFYEGGVREFVKFLDRSKSSIMSEPIYMVGERNG 234

Query: 297 THRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI 355
                VE A+ W +   E    + N I   +GGTH +G R ALTR I  YA+ +   +  
Sbjct: 235 I---GVEVAMWWNDSYHENVLPFTNNIPQRDGGTHLAGFRGALTRTITGYAQSSGIAKRE 291

Query: 356 S--IISDDLMISAVGILSVFIREPE 378
                 DD       +LSV + +P+
Sbjct: 292 KVDFTGDDAREGLTCVLSVKVPDPK 316


>gi|6644148|gb|AAF20923.1| gyrase B subunit [Alishewanella fetalis]
          Length = 417

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 160/428 (37%), Positives = 246/428 (57%), Gaps = 16/428 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T L  GGKFD+++Y++SGGLHGVG+SVVNALSD L +T+ R+  + SQ +  G+P 
Sbjct: 1   EVIMTFLECGGKFDDNSYKVSGGLHGVGVSVVNALSDVLELTIRRKGKVHSQIYHLGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    +     GT I F P P IF D   F    L K  +  ++L+  V    + ++ 
Sbjct: 61  APLSVIGETEG-TGTAIRFWPSPTIFSDIN-FHYDILAKRLRELSFLNSGVSIILTDER- 117

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + + F + GG++ ++Q    ++ + + + F    +++      VE A+ W +
Sbjct: 118 ------TDKTDHFKYDGGIEAFVQYLNRSKPVFNPKAFYFTDQRED--GIAVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR +  Y +      K  +    DD      
Sbjct: 170 SYQENVFCFTNNIPQRDGGTHLAGFRGALTRVLNTYIDQEGYAKKMKVQASGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            ++SV + +P+F+ QTK KLVS + +  VE+ + +  + YLV+N  +A   +  +++ + 
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSSEVRSAVESVMAEKLNEYLVENRGDAKLFVGKIVDAAR 289

Query: 428 ERLRRRKQREVN-RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK RE+  RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARKAREMTVRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A   KI ++Q++  L+ ALGC   R +Y  +  RY  +++MTDAD
Sbjct: 350 QAILPLKGKILNVEKARFHKILSSQEVGTLITALGCGIGREEYNPDKTRYHSIVLMTDAD 409

Query: 546 VDGAHIAS 553
           V+G+HI +
Sbjct: 410 VEGSHILT 417


>gi|307939346|gb|ADN95864.1| DNA gyrase B [Hymenobacter rigui]
          Length = 431

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 167/437 (38%), Positives = 244/437 (55%), Gaps = 23/437 (5%)

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFD ++Y+ SGGLHGVG+  VNALS   HVTV R   I+ Q+++ G+P   + 
Sbjct: 1   TVLHAGGKFDKNSYKTSGGLHGVGVRXVNALSTHTHVTVKRDGHIYEQEYTIGVPQYDVR 60

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
           +       RGT + F+PD  IF +   +   R+    +  +YL+  ++   +  +   E 
Sbjct: 61  QIGDTTE-RGTLVWFQPDATIFDETTTYSYERIATRLRELSYLNRGIRIILTDLRTP-ED 118

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE 314
            G P++ EF+  GG+  Y+Q    +R+++  +     TE+       VE A  + +   E
Sbjct: 119 GGEPQQNEFFSEGGVAEYVQYLDNSRTVLMHKPVYVATER----GIPVEVAFQYNDSFQE 174

Query: 315 I-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILS 371
              SY N I T EGGTH SG R A+TR +K YAE +    K  + I  DD       ++S
Sbjct: 175 HIYSYVNNINTHEGGTHVSGFRAAITRVLKAYAEKSGEVAKAKVEIQGDDFREGLTAVIS 234

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V + EP+F GQTK KL + +    V   + +  + YL +NP EA  +++ VI  ++ R+ 
Sbjct: 235 VKVAEPKFEGQTKGKLGNSEVNGAVNTVVGEILNQYLEENPKEARVIIDKVILAAKARIA 294

Query: 432 RRKQREVNRKTAIRKLRL-PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +K RE+ ++  +      PGKLADCS++     E+++VEGDSAGG+AKQ RNR+ QA+L
Sbjct: 295 AKKAREMVQRKTVLGSNSLPGKLADCSESDPEICEIYLVEGDSAGGTAKQGRNRAFQAIL 354

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-------------DLRYEK 537
           PLRGKILNV  A   +I  N++I +++ ALG         E              LRY K
Sbjct: 355 PLRGKILNVEKAQEHRILENEEIRNMITALGVTFGMPADPENGIEADAKALNTAKLRYHK 414

Query: 538 VIIMTDADVDGAHIASL 554
           VIIMT ADVDG+HI +L
Sbjct: 415 VIIMTXADVDGSHIRTL 431


>gi|269799080|gb|ACZ43818.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 371

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 128/382 (33%), Positives = 208/382 (54%), Gaps = 16/382 (4%)

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AG+   I V++  +G ++V D+GRGIPV+ H +    S  E+ILT LHAGGKFD+++Y++
Sbjct: 1   AGHCTDIVVTIHDDGSVSVSDDGRGIPVDIHEE-EGVSAAEVILTVLHAGGKFDDNSYKV 59

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS++L +T+ R   I +Q +  G+P  P+ +   V +  GT + F 
Sbjct: 60  SGGLHGVGVSVVNALSEKLELTIFRHGKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFW 118

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F    L K  +  ++L+  V      ++E        + + F + GG+K
Sbjct: 119 PSHETFTNTL-FHYDILAKRLRELSFLNSGVSIKLIDERED------GKSDHFVYEGGIK 171

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            ++     N++ I+ + F    E++     TVE A+ W +     I  + N I   +GGT
Sbjct: 172 AFVDYLNVNKTPINKDAFHFSVERED--GITVEVAMQWNDGFQEGIYCFTNNIPQRDGGT 229

Query: 330 HESGLRVALTRGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           H +G R ALTR +  Y E     +  ++ +   DD       ++SV + +P+F+ QTK K
Sbjct: 230 HLAGFRGALTRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDK 289

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIR 445
           LVS + +  VE A+ +    YL++NP EA+ ++  +I+        R+ +    RK A+ 
Sbjct: 290 LVSSEVKSAVEQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKARDMTRRKGALD 349

Query: 446 KLRLPGKLADCSQNIAHGTELF 467
              LPGKLADC +     +EL+
Sbjct: 350 LAGLPGKLADCQEKDPALSELY 371


>gi|269799118|gb|ACZ43837.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 370

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 126/381 (33%), Positives = 206/381 (54%), Gaps = 16/381 (4%)

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+   + V++  +G ++V D+GRGIPV+ H +    S  E+ILT LHAGGKFD+++Y++S
Sbjct: 1   GHCTDVVVTIHEDGSVSVSDDGRGIPVDIHEE-EGVSAAEVILTVLHAGGKFDDNSYKVS 59

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS++L +T+ R   I  Q +  G P +P+     + +  GT + F P
Sbjct: 60  GGLHGVGVSVVNALSEKLELTIHRHGHIHQQIYRHGEPQAPIAVIGDI-DTTGTELRFWP 118

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++E        + + F + GG+K 
Sbjct: 119 SHETFTNTL-FHYDILAKRLRELSFLNSGVSIKLIDERED------GKSDHFVYEGGIKA 171

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++     N++ I+ + F    E++     TVE A+ W +     I  + N I   +GGTH
Sbjct: 172 FVDYLNVNKTPINKDAFHFSVERED--GITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTH 229

Query: 331 ESGLRVALTRGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
            +G R ALTR +  Y E     +  ++ +   DD       ++SV + +P+F+ QTK KL
Sbjct: 230 LAGFRGALTRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKL 289

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLRRRKQREVNRKTAIRK 446
           VS + +  VE A+ +    YL++NP EA+ ++  +I+ S      R+ +    RK A+  
Sbjct: 290 VSSEVKSAVEQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKAREMTRRKGALDL 349

Query: 447 LRLPGKLADCSQNIAHGTELF 467
             LPGKLADC +     +EL+
Sbjct: 350 AGLPGKLADCQEKDPALSELY 370


>gi|307939318|gb|ADN95850.1| DNA gyrase B [Hymenobacter roseosalivarius]
          Length = 434

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 170/438 (38%), Positives = 246/438 (56%), Gaps = 23/438 (5%)

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           +T LHAGGKFD  +Y++SGGLHGVG+S VNALS +L VTV R   ++ Q++  G+P  P+
Sbjct: 3   MTVLHAGGKFDKDSYKVSGGLHGVGVSCVNALSKDLKVTVRRNGHLYEQEYKIGVPQYPV 62

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           ++        GT++ F PD  IF +   +    +    +  +YL+  ++   +  +   +
Sbjct: 63  KQIGDTEEH-GTQVEFLPDDSIFTELV-YKYETIATRLRELSYLNKGIRITLTD-RRDND 119

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP 313
             G    EEFY  GGL  ++      R+++  +     +EK GT    VE A+ + +   
Sbjct: 120 VDGNFLYEEFYSEGGLSEFVGYLDAGRTVLMPKPIHVISEKGGTP---VEVALQYNDSYQ 176

Query: 314 EI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGIL 370
           E   SY N I T EGGTH +G R ALTR +K YA+ +    K  + I  DD       ++
Sbjct: 177 EHIFSYVNNINTIEGGTHVAGFRSALTRTLKAYADKSGMLEKAKVEIQGDDFREGLTAVI 236

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV ++EP+F GQTKTKL + D    V  A+ +  + YL +NP EA  ++E VI  +  R+
Sbjct: 237 SVKVQEPQFEGQTKTKLGNSDVSGAVNQAVGEILNQYLEENPKEARIIVEKVILAARARI 296

Query: 431 RRRKQREVNRKTAIRKLRL-PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK RE+ ++  +      PGKLADCS++     EL++VEGDSAGG+AKQ RNR+ QA+
Sbjct: 297 AARKAREMVQRKTVLGSNSLPGKLADCSESDPKICELYLVEGDSAGGTAKQGRNRAFQAI 356

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY-------------REEDLRYE 536
           LPLRGKILNV  A   +I  N++I +++ ALG    +                   LRY 
Sbjct: 357 LPLRGKILNVEKAQEHRIYENEEIKNMITALGVSFGTPADPENGVEADPKGLNMTKLRYH 416

Query: 537 KVIIMTDADVDGAHIASL 554
           KVIIMT A VDG+HI +L
Sbjct: 417 KVIIMTXAXVDGSHIRTL 434


>gi|29652855|gb|AAO87397.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652926|gb|AAO87432.1| DNA gyrase B [Listeria monocytogenes]
          Length = 205

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 89/206 (43%), Positives = 124/206 (60%), Gaps = 2/206 (0%)

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +R +    + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+L
Sbjct: 2   AKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAIL 61

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           P+RGKILNV  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAH
Sbjct: 62  PIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAH 121

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           I +LLLT FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  
Sbjct: 122 IRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDT 179

Query: 611 KIEISRFKGLGEMLASQLKETAMDAN 636
           K  I R+KGLGEM   QL +T M+  
Sbjct: 180 KYSIQRYKGLGEMNPEQLWDTTMNPE 205


>gi|307939322|gb|ADN95852.1| DNA gyrase B [Hymenobacter sp. VUG-A141a]
          Length = 435

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 170/439 (38%), Positives = 246/439 (56%), Gaps = 23/439 (5%)

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           +I+T LHAGG FD  +Y++SGGLHGVG+S VNALS +L VTV R   ++ Q++  G+P  
Sbjct: 1   LIMTVLHAGGXFDKDSYKVSGGLHGVGVSCVNALSKDLKVTVRRNGHLYEQEYKIGVPQY 60

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
           P+++        GT++ F PD  IF +   +    +    +  +YL+  ++   +  +  
Sbjct: 61  PVKQISDTEEH-GTQVEFLPDDSIFTESV-YKYETIATRLRELSYLNKGIRITLTD-RRD 117

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
            +  G    EEFY  GGL  ++      R+++        +EK GT    VE A+ + + 
Sbjct: 118 NDVDGNFLYEEFYSEGGLSEFVAYLDAGRTVLMPNPIHVISEKGGTP---VEVALQYNDS 174

Query: 312 NPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVG 368
             E   SY N I T EGGTH +G R ALTR +K YA+ +    K  + I  DD       
Sbjct: 175 YQEHIFSYVNNINTVEGGTHVAGFRSALTRTLKAYADKSGMLEKAKVEIQGDDFREGLTA 234

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           ++SV ++EP+F GQTKTKL + D    V  A+ +  + YL +NP EA  ++E VI  +  
Sbjct: 235 VISVKVQEPQFEGQTKTKLGNSDVSGAVNQAVGEILNQYLEENPKEARIIVEKVILAARA 294

Query: 429 RLRRRKQREVNRKTAIRKLRL-PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
           R+  RK RE+ ++  +      PGKLADCS++     EL++VEGDSAGG+AKQ RNR+ Q
Sbjct: 295 RIAARKAREMVQRKTVLGSNSLPGKLADCSESDPKICELYLVEGDSAGGTAKQGRNRAFQ 354

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY-------------REEDLR 534
           A+LPLRGKILNV  A   +I  N++I +++ ALG    +                   LR
Sbjct: 355 AILPLRGKILNVEKAQEHRIYENEEIKNMITALGVSFGTPADPENGIEADPKGLNMNKLR 414

Query: 535 YEKVIIMTDADVDGAHIAS 553
           Y KVIIMTDA VDG+HI +
Sbjct: 415 YHKVIIMTDAXVDGSHIRT 433


>gi|33187285|gb|AAP97505.1| DNA gyrase subunit B [Campylobacter coli]
          Length = 403

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 164/416 (39%), Positives = 228/416 (54%), Gaps = 18/416 (4%)

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFD  TY++SGGLHGVG+SVVNALS +L  TV R   I+ Q+FS G  +S   
Sbjct: 2   TVLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLIATVERXGEIYRQEFSEGKVISEFG 61

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
              K +   GT I F PD  IF     FD   L K  +  AYL+ ++   +  ++     
Sbjct: 62  VIGKSKK-TGTTIEFWPDDTIFEVT-EFDYDILAKRFRELAYLNPKITINFKDNR----- 114

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE 314
             + + E F+F GG+  ++    +  +L     F+   E        VE A+ + +   E
Sbjct: 115 --VGKSESFHFEGGISQFVSDLNKKEALTKPIFFSVDEED-----VNVEVALLYNDTYSE 167

Query: 315 IT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
              S+ N I T +GGTHE+G R+ LTR I  Y E      ++   I  DD+    + +++
Sbjct: 168 NLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEANASAREKDSKITGDDVREGLIAVVN 227

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V + EP+F GQTK KL S   +  V  A  +    Y  +NPIEA  ++   +  +  R  
Sbjct: 228 VKVPEPQFEGQTKGKLGSSYVRPIVSKASFEYLSKYFEENPIEAKAIMNKALMAARGREA 287

Query: 432 RRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +K RE   +K ++    LPGKLADC       +E+++VEGDSAGGSAKQ R RS QA+L
Sbjct: 288 AKKARELTRKKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAIL 347

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADV 546
           PLRGKILNV  A  +KI  ++QI +++ A GC     +    LRY K+IIMTDADV
Sbjct: 348 PLRGKILNVEKARLDKIXKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADV 403


>gi|23428629|gb|AAM12397.1| gyrase B [Zymomonas mobilis subsp. mobilis CP4]
          Length = 190

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 92/187 (49%), Positives = 124/187 (66%), Gaps = 7/187 (3%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93
            A     D+YDA SI++L GL+ VR RPGMYIG TD+   LHH+  EV DNA+DE +AGY
Sbjct: 1   MATSKQHDDYDAGSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEALAGY 60

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN----STYE 149
            +L+++++  +G ++V DNGRGIP   HP+    S  E+I+T LHAGGKFDN    + Y+
Sbjct: 61  CDLVKIAIYDDGSVSVEDNGRGIPTGIHPE-EGVSAAEVIMTQLHAGGKFDNNANSNAYK 119

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALSD L +TV R       +F  G+ + PL+      +KRGTR+ F
Sbjct: 120 VSGGLHGVGVSVVNALSDYLELTVWRDGQEHRMRFEHGVAVEPLQVVG-ASDKRGTRVRF 178

Query: 210 RPDPKIF 216
            P  + F
Sbjct: 179 HPSAETF 185


>gi|2196792|gb|AAB80813.1| DNA gyrase beta-subunit [Shewanella putrefaciens]
          Length = 418

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 155/429 (36%), Positives = 239/429 (55%), Gaps = 15/429 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T L +  KFD+++Y++SGGLHGVG+SVVNALS +L +T+ R   ++ Q ++ G+P 
Sbjct: 1   EVIMTVLCSLRKFDHNSYKVSGGLHGVGVSVVNALSKKLQMTIRRAGKVYEQFYTHGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+++        GT I F P    F D   F    L K  +  ++L+  V      +++
Sbjct: 61  APIKEIGDATK-TGTEIRFWPSEDTFSDV-EFHFEILAKRVRELSFLNSGVGIRLVDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + E F + GG+  ++++   N++ ++ ++F    E++     TVE A+ W +
Sbjct: 119 N-------KNEFFKYEGGISAFVESLNRNKTPVNKDVFHFMQERED--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                I  + N I   +GGTH  G R ALTR +  Y E      K   S   DD      
Sbjct: 170 GYQENIFCFTNNIPQRDGGTHLVGFRSALTRNLNSYMENEGYNKKGKTSATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            ++SV + +P+F+ QTK KLVS + +  VE  + +  + YL++N      + + V     
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEKLNDYLLENHRCELIVGKIVDAARA 289

Query: 428 ERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
               R+ +    RK A+    LPGKLADC +     +E++IVEGD AGGSAKQ RNR NQ
Sbjct: 290 REAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDFAGGSAKQGRNRKNQ 349

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADV 546
           A+LPL+GKILNV  A  +K+  +Q++  L+ ALGC   R +Y  +  RY K+II+TDA V
Sbjct: 350 AILPLKGKILNVEKARFDKMLFSQEVATLITALGCGIGRDEYNPDKTRYHKIIIITDAVV 409

Query: 547 DGAHIASLL 555
           DG+HI +LL
Sbjct: 410 DGSHILTLL 418


>gi|269799098|gb|ACZ43827.1| DNA gyrase subunit B [Moritella viscosa]
 gi|269799100|gb|ACZ43828.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 372

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 129/383 (33%), Positives = 209/383 (54%), Gaps = 16/383 (4%)

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+   I V++  +G ++V D+GRGIPV+ H +    S  E+ILT LHAGGKFD+++Y++S
Sbjct: 1   GHCTDIVVTIHDDGSVSVSDDGRGIPVDIHEE-EGVSAAEVILTVLHAGGKFDDNSYKVS 59

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS++L +T+ R   I +Q +  G+P  P+ +   V +  GT + F P
Sbjct: 60  GGLHGVGVSVVNALSEKLELTIFRHGKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFWP 118

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++E        + + F + GG+K 
Sbjct: 119 SHETFTNTL-FHYDILAKRLRELSFLNSGVSIKLIDERED------GKSDHFVYEGGIKA 171

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++     N++ I+ + F    E++     TVE A+ W +     I  + N I   +GGTH
Sbjct: 172 FVDYLNVNKTPINKDAFHFSAERED--GITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTH 229

Query: 331 ESGLRVALTRGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
            +G R ALTR +  Y E     +  ++ +   DD       ++SV + +P+F+ QTK KL
Sbjct: 230 LAGFRGALTRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKL 289

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRK 446
           VS + +  VE A+ +    YL++NP EA+ ++  +I+        R+ +    RK A+  
Sbjct: 290 VSSEVKSAVEQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKARDMTRRKGALDL 349

Query: 447 LRLPGKLADCSQNIAHGTELFIV 469
             LPGKLADC +     +EL+IV
Sbjct: 350 AGLPGKLADCQEKDPALSELYIV 372


>gi|307939304|gb|ADN95843.1| DNA gyrase B [Hymenobacter antarcticus]
          Length = 434

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 169/440 (38%), Positives = 249/440 (56%), Gaps = 27/440 (6%)

Query: 136 TLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK 195
            LHAGGKFD  +Y++SGGLHGVG+S VNALS +L VTV R    + Q++  GIP   +++
Sbjct: 1   VLHAGGKFDKGSYKVSGGLHGVGVSCVNALSTDLKVTVRRNGHKYEQEYKIGIPQYDVKE 60

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
              +  + GT + F PD  IF +   +    +    +  +YL+  ++   +  +E  E  
Sbjct: 61  VG-LSEEHGTEVQFLPDATIFTE-TEYRYDTVAGRLRDLSYLNKGIRITLTDRREKLE-G 117

Query: 256 GIPEKEEFYFPGGLKTYLQT-KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313
           G+   EEFY  GGL+ ++Q    E R  + SE    ++EK GT    VE A+ +      
Sbjct: 118 GVFRGEEFYSTGGLRDFVQYLDGEQRPSLLSEPIYVESEKGGTP---VEVALQYNTSYQE 174

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILS 371
            + SY N I T EGGTH +G R A+TR +K Y +  +   K  + I  DD       ++S
Sbjct: 175 NVYSYVNNINTIEGGTHVAGFRSAVTRVLKTYGDKNKLFEKAKVEITGDDFREGLTAVIS 234

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V ++EP+F GQTKTKL + +    V + + +    YL +NP +A +++E VI  ++ R+ 
Sbjct: 235 VKVQEPQFEGQTKTKLGNSEVSGAVNSVVGEILTQYLDENPNQANRIMEKVILAAKARIA 294

Query: 432 RRKQREVNRKTAIRKLRL-PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            RK +++ ++  +      PGKLADCS++     EL++VEGDSAGG+AKQ RNR+ QA+L
Sbjct: 295 ARKAKDMVQRKGVLSSNSLPGKLADCSESDPEICELYLVEGDSAGGTAKQGRNRAFQAIL 354

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY----------------REEDLR 534
           PLRGKILNV  A   +I  N++I +++ ALG     +                     LR
Sbjct: 355 PLRGKILNVEKAQEHRILENEEIKNMITALGVSFNERKSLAFTTDDDGTESGPLNFSKLR 414

Query: 535 YEKVIIMTDADVDGAHIASL 554
           Y KVIIMTDADVDG+HI +L
Sbjct: 415 YHKVIIMTDADVDGSHIRTL 434


>gi|119369968|gb|ABL67998.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 421

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 155/430 (36%), Positives = 240/430 (55%), Gaps = 14/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+  ++ Q++  G P+
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSTKLTLAIRREGELWEQEYHCGDPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+  K   +  RGT + F PDP++F     F  ARL K  +  AYL+  +    +  + 
Sbjct: 61  APIAAKGPAKG-RGTTVHFWPDPEVFES-TEFSFARLEKRFRELAYLNDGLTILLN-RRT 117

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
              K G    E      G+  ++    ++R  +   +   K ++ G     V+ AI W +
Sbjct: 118 WGPKKGG---ESITMKAGVAAFVLDINKSREAVHPTVIRIKGDRDGVM---VDTAIQWND 171

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R A+TR +  Y E      K  ++I + D+     
Sbjct: 172 GYNESVFPFTNNIPQVDGGTHLTGFRSAMTRVLGGYMEREGIATKAKVTIDAADMREGMT 231

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERS 426
            +LSV + +P+F+ QTK KLVS + +  VE+ + +    +L + P EA  +   ++    
Sbjct: 232 AVLSVKVPDPKFSSQTKDKLVSSEVRPIVESVIAEGVGTFLDEKPKEAQAICAKIVEAAK 291

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R  
Sbjct: 292 AREAARKARDLTRRKGALDIANLPGKLADCQEKDPALCEIYLVEGDSAGGSAKQGRDRKF 351

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +++  + +I  L+ ALG            LRY ++II+TDAD
Sbjct: 352 QAILPLKGKILNVERARFDRMLESDEIGTLITALGTGIGQDEFNAGKLRYHRIIIITDAD 411

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 412 VDGSHIRTLL 421


>gi|269799076|gb|ACZ43816.1| DNA gyrase subunit B [Moritella japonica]
          Length = 370

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 129/381 (33%), Positives = 207/381 (54%), Gaps = 16/381 (4%)

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AG+   I V++  +G ++V D+GRGIPV+ H +    S  E+ILT LHAGGKFD+++Y++
Sbjct: 1   AGHCTDIVVTIHDDGSVSVSDDGRGIPVDIHEE-EGVSAAEVILTVLHAGGKFDDNSYKV 59

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS++L +T+ R   I +Q +  G+P +P+ +   V    GT + F 
Sbjct: 60  SGGLHGVGVSVVNALSEKLELTIFRHGKIHNQIYRHGVPEAPMAETG-VIEGTGTELRFW 118

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F    L K  +  ++L+  V      ++E        +++ F + GG+K
Sbjct: 119 PSHETFTNTL-FHYDILAKRLRELSFLNSGVSIKLIDERED------GKQDHFVYEGGIK 171

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            ++     N++ I+ E F    E++     TVE A+ W +     I  + N I   +GGT
Sbjct: 172 AFIDYLNVNKTPINKEAFHFSVERED--GITVEVAMQWNDGFQEGIYCFTNNIPQRDGGT 229

Query: 330 HESGLRVALTRGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           H +G R ALTR +  Y E     +  ++ +   DD       ++SV + +P+F+ QTK K
Sbjct: 230 HLAGFRGALTRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDK 289

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIR 445
           LVS + +  VE A+ +    YL++NP EA  ++  +I+        R+ +    RK A+ 
Sbjct: 290 LVSSEVKSAVEQAMGEKLAEYLLENPKEAATVVTKIIDASRAREAARKARDMTRRKGALD 349

Query: 446 KLRLPGKLADCSQNIAHGTEL 466
              LPGKLADC +     +EL
Sbjct: 350 LAGLPGKLADCQEKDPALSEL 370


>gi|269799120|gb|ACZ43838.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 369

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 126/380 (33%), Positives = 205/380 (53%), Gaps = 16/380 (4%)

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+   + V++  +G ++V D+GRGIPV+ H +    S  E+ILT LHAGGKFD+++Y++S
Sbjct: 1   GHCTDVVVTIHEDGSVSVSDDGRGIPVDIHEE-EGVSAAEVILTVLHAGGKFDDNSYKVS 59

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS++L +T+ R   I  Q +  G P +P+     + +  GT + F P
Sbjct: 60  GGLHGVGVSVVNALSEKLELTIHRHGHIHQQIYRHGEPQAPIAVIGDI-DTTGTELRFWP 118

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++E        + + F + GG+K 
Sbjct: 119 SHETFTNTL-FHYDILAKRLRELSFLNSGVSIKLIDERED------GKSDHFVYEGGIKA 171

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++     N++ I+ + F    E++     TVE A+ W +     I  + N I   +GGTH
Sbjct: 172 FVDYLNVNKTPINKDAFHFSVERED--GITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTH 229

Query: 331 ESGLRVALTRGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
            +G R ALTR +  Y E     +  ++ +   DD       ++SV + +P+F+ QTK KL
Sbjct: 230 LAGFRGALTRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKL 289

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLRRRKQREVNRKTAIRK 446
           VS + +  VE A+ +    YL++NP EA+ ++  +I+ S      R+ +    RK A+  
Sbjct: 290 VSSEVKSAVEQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKAREMTRRKGALDL 349

Query: 447 LRLPGKLADCSQNIAHGTEL 466
             LPGKLADC +     +EL
Sbjct: 350 AGLPGKLADCQEKDPALSEL 369


>gi|33187325|gb|AAP97525.1| DNA gyrase subunit B [Campylobacter coli]
          Length = 400

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 164/414 (39%), Positives = 227/414 (54%), Gaps = 18/414 (4%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD  TY++SGGLHGVG+SVVNALS +L  TV R   I+ Q+FS G  +S      K
Sbjct: 1   AGGKFDKDTYKVSGGLHGVGVSVVNALSKKLIATVERNGEIYRQEFSEGKVISEFGVIGK 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
            +   GT I F PD  IF     FD   L K  +  AYL+ ++   +  ++       + 
Sbjct: 61  SKK-TGTTIEFWPDDTIFEVT-EFDYDILAKRFRELAYLNPKITINFKDNR-------VG 111

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-S 317
           + E F+F GG+  ++    +  +L     F+   E        VE A+ + +   E   S
Sbjct: 112 KSESFHFEGGISQFVSDLNKKEALTKPIFFSVDEED-----VNVEVALLYNDTYSENLLS 166

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I T +GGTHE+G R+ LTR I  Y E      ++   I  DD+    + ++SV + 
Sbjct: 167 FVNNIKTPDGGTHEAGFRMGLTRVISNYIEANASAREKDSKITGDDVREGLIAVVSVKVP 226

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           EP+F GQTK KL S   +  V  A  +    Y  +NPIEA  ++   +  +  R   +K 
Sbjct: 227 EPQFEGQTKGKLGSSYVRPIVSKASFEYLSKYFEENPIEAKAIMNKALMAARGREAAKKA 286

Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE   +K ++    LPGKLADC       +E+++VEGDSAGGSAKQ R RS QA+LPLRG
Sbjct: 287 RELTRKKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRG 346

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           KILNV  A  +KI  ++QI +++ A GC     +    LRY K+IIMTDADVDG
Sbjct: 347 KILNVEKARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDG 400


>gi|222839518|gb|EEE77855.1| predicted protein [Populus trichocarpa]
          Length = 422

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 129/397 (32%), Positives = 191/397 (48%), Gaps = 23/397 (5%)

Query: 16  SQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALH 75
           +  S+E  +     P +   +  SAS+ Y   SIR+L+GLEPV+ RPGMY   T      
Sbjct: 4   NASSTEPGRALQSAPMAVKPSPTSASE-YSEGSIRVLKGLEPVKQRPGMY---TRTDNPL 59

Query: 76  HLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILT 135
           H+  EVIDNA DE +AG+   I  +L  +G  +V D+GRGIP   HP+      +E++ T
Sbjct: 60  HVLQEVIDNAADEALAGFGKKIRFTLHSDGSYSVEDDGRGIPFGMHPE-EKAPVVELVFT 118

Query: 136 TLHA---GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
            LHA     K     Y  SGGLHGVG+SV NAL+  L   + R+  + +  FS G  + P
Sbjct: 119 RLHAGGKFDKGKGGAYSFSGGLHGVGVSVTNALATRLEACIHREGKVATIAFSGGDVVEP 178

Query: 193 LEKKEKVRNKR--GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           L+ +     +R  GT +   PD   + +        L+ + +SKA L   V      +K 
Sbjct: 179 LQSRPLAAGERKQGTTVRVWPDA-RYFESPQLPMGELMHLLRSKAVLMPGVSVTLVNEKT 237

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-- 308
                     + + F GGL+ YLQ  L   ++I      G  ++        E A     
Sbjct: 238 RD-------TQTWQFKGGLRDYLQQSLHGEAVIPLFEGEGFADRHHDSFAEGEGAAWCVA 290

Query: 309 --CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT-QNKRAISIISDDLMIS 365
              +  P   SY N I T  GGTH+SGLR  L + +K + E+     + + ++ DD+   
Sbjct: 291 FTEDGAPLRESYVNLIPTTAGGTHDSGLRDGLFQAVKAFIEMHSLLPKGVKLMPDDVFAR 350

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRD 402
           A  +L+  + +P+F GQ K +L S DA R V   +R 
Sbjct: 351 ASYVLNAKVLDPQFQGQIKERLNSRDAVRLVSGYVRP 387


>gi|2267068|gb|AAB63499.1| gyrase B subunit [Pseudoalteromonas haloplanktis subsp.
           haloplanktis]
          Length = 422

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 155/422 (36%), Positives = 242/422 (57%), Gaps = 16/422 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L +T+ R+  +  Q ++ G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKLTIRREGKLHEQFYTMGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL          GT I F P  + F +   F    L K  +  ++L+  V    S ++E
Sbjct: 61  APLAVIGD-SETNGTEIRFWPSGETFTN-LDFHYDILAKRLRELSFLNSGVSIILSDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + + F + GG++ +++    N++ +   +F    E++     +VE ++ W +
Sbjct: 119 ------ENKSDHFKYEGGIRAFVEYLNRNKTPVHKGVFHFTHERE-EDGISVEVSMQWND 171

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYA----ELTQNKRAISIISDDLMIS 365
                I  + N I   +GGTH +G R ALTR +  Y        + K   +   DD    
Sbjct: 172 AFQENIYCFTNNIPQRDGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREG 231

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE- 424
              ++SV + +P+F+ QTK KLVS + +  VE A+ + F  +L++NP++A  ++  +I+ 
Sbjct: 232 LTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQAMAEKFTEFLLENPLDAKIVVGKIIDA 291

Query: 425 RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
                  R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR
Sbjct: 292 ARAREAARKAREMTRRKGAMDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNR 351

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTD 543
            NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  E LRY ++IIMTD
Sbjct: 352 KNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYDPEKLRYHRIIIMTD 411

Query: 544 AD 545
             
Sbjct: 412 QT 413


>gi|29652853|gb|AAO87396.1| DNA gyrase B [Listeria monocytogenes]
          Length = 193

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 89/195 (45%), Positives = 120/195 (61%), Gaps = 2/195 (1%)

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A 
Sbjct: 1   LEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKAR 60

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ M
Sbjct: 61  LDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYM 120

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
             L++  ++++  PPL++I  G +  Y + +   +  L    K    K  I R+KGLGEM
Sbjct: 121 RPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASLDKD--TKYSIQRYKGLGEM 178

Query: 624 LASQLKETAMDANKR 638
              QL +T M+   R
Sbjct: 179 NPEQLWDTTMNPEHR 193


>gi|33187315|gb|AAP97520.1| DNA gyrase subunit B [Campylobacter coli]
 gi|33187317|gb|AAP97521.1| DNA gyrase subunit B [Campylobacter coli]
          Length = 400

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 164/414 (39%), Positives = 227/414 (54%), Gaps = 18/414 (4%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD  TY++SGGLHGVG+SVVNALS +L  TV R   I+ Q+FS G  +S      K
Sbjct: 1   AGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGK 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
            +   GT I F PD  IF     FD   L K  +  AYL+ ++   +  ++       + 
Sbjct: 61  SKK-TGTTIEFWPDDTIFEVT-EFDYDILAKRFRELAYLNPKITINFKDNR-------VG 111

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-S 317
           + E F+F GG+  ++    +  +L     F+   E        VE A+ + +   E   S
Sbjct: 112 KSESFHFEGGISQFVSDLNKKEALTKPIFFSVDEED-----VNVEVALLYNDTYSENLLS 166

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I T +GGTHE+G R+ LTR I  Y E      ++   I  DD+    + ++SV + 
Sbjct: 167 FVNNIKTPDGGTHEAGFRMGLTRVISNYIEANASAREKDSKITGDDVREGLIAVVSVKVP 226

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           EP+F GQTK KL S   +  V  A  +    Y  +NPIEA  ++   +  +  R   +K 
Sbjct: 227 EPQFEGQTKGKLGSSYVRPIVSKASFEYLSKYFEENPIEAKAIMNKALMAARGREAAKKA 286

Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE   +K ++    LPGKLADC       +E+++VEGDSAGGSAKQ R RS QA+LPLRG
Sbjct: 287 RELTRKKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRG 346

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           KILNV  A  +KI  ++QI +++ A GC     +    LRY K+IIMTDADVDG
Sbjct: 347 KILNVEKARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDG 400


>gi|312271574|gb|ADQ56142.1| DNA gyrase subunit B [Vibrio sp. PS0705-5A3]
          Length = 373

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 128/384 (33%), Positives = 209/384 (54%), Gaps = 15/384 (3%)

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+ + I +++  +  ++V D+GRGIP E H +    S  E+I+T LHAGGKFD+++Y++S
Sbjct: 1   GHCSDIIITIHEDNSVSVSDDGRGIPTEMHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVS 59

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+++ +T+ R+  IF Q +  G+P +PL    K     GTRI F P
Sbjct: 60  GGLHGVGVSVVNALSEKVELTIKRKGEIFQQIYHHGVPQAPLAVIGKTEE-TGTRIRFWP 118

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V    + ++E        + + F F GG++ 
Sbjct: 119 SEETFTN-IEFHYEILAKRLRELSFLNSGVSIKLTDERE------EDKSDHFMFEGGIRA 171

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ I  +IF     ++     TVE A+ W +     +  + N I   +GGTH
Sbjct: 172 FVEHLNRNKTPIHQKIFYFDHTRED--GITVEVAMQWNDGFQEGVYCFTNNIPQRDGGTH 229

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QTK KLV
Sbjct: 230 LAGFRGALTRTLNNFMDKEGYSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 289

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE+A+ +    +L++NP EA  +   +I+        R+ +    RK A+   
Sbjct: 290 SSEVKSAVESAMSEKLSEFLIENPTEAKIVCGKIIDAARAREAARKARDMTRRKGALDLA 349

Query: 448 RLPGKLADCSQNIAHGTELFIVEG 471
            LPGKLADC +     +EL+IVEG
Sbjct: 350 GLPGKLADCQEKDPALSELYIVEG 373


>gi|2196800|gb|AAB80817.1| DNA gyrase beta-subunit [Shewanella putrefaciens]
          Length = 419

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 154/430 (35%), Positives = 242/430 (56%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T L A  K+++++Y++SGGLHGVG+SVVNALS +L +T+ R   ++ Q ++ G+P 
Sbjct: 1   EVIMTVLMALKKYEDNSYKVSGGLHGVGVSVVNALSKKLQMTIRRAGKVYEQFYTHGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+++        GT I F P    F D   F    L K  +  ++L+  V      +++
Sbjct: 61  APIKEIGDATK-TGTEIRFWPSEDTFSD-VEFHFEILAKRVRELSFLNSGVGIRLVDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + E F + GG+  ++     N++ ++ ++F    E++     TVE A+ W +
Sbjct: 119 N-------KNEFFKYEGGISAFVDYLNRNKTPVNKDVFHFMQERED--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                I  + N I   +GGTH  G R ALTR +  Y E      K   S   DD      
Sbjct: 170 GYQENIFCFTNNIPQRDGGTHLVGFRSALTRNLNSYMENEGYNKKGKTSATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +  + YLV+NP +A  ++  +++   
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEKLNDYLVENPADAKLIVGKIVDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+  +Q++  L+ ALGC   R +Y  +  RY+ + ++TDA 
Sbjct: 350 QAILPLKGKILNVEKARFDKMLFSQEVATLITALGCGIGRDEYNPDKTRYQNIFMVTDAL 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHILTLL 419


>gi|15078758|ref|NP_149508.1| 045L [Invertebrate iridescent virus 6]
 gi|82039172|sp|Q9QSK1|TOP2_IIV6 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|5725647|gb|AAD48151.1|AF083915_5 045L [Invertebrate iridescent virus 6]
          Length = 1132

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 134/718 (18%), Positives = 255/718 (35%), Gaps = 117/718 (16%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTDE-----------------------KALHHLFSEVI 82
                 L  ++ V +RP + IG T                         +AL  +F EV+
Sbjct: 7   KKQYTTLSDIDHVLLRPEVIIGSTVPMEQTEYVVDENFSEILEKQVFVSEALIRIFVEVL 66

Query: 83  DNAMDEVIA-----GYANLIEVSLDGNGFLTVVDNGRGIPV--------ENHPKFPNKST 129
            NA+D +            I++ ++ +G   + ++G+ I +        E + K  +   
Sbjct: 67  ANAVDNIHRSKGSSTPCKSIKIKIEDDGTTMIHNDGQVIKISKEENDGIEINGKKCSVYN 126

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR--QNTIFSQKFSRG 187
            E++   L +   +D++    + G +G+G+   N LS    V          F Q+++  
Sbjct: 127 HELVFGHLRSSSNYDDTVVRQTSGKNGLGVKCTNILSKSFKVIGVDPENKKKFVQEWTNN 186

Query: 188 IPLSPLEKKEKVRNKRG-TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV--KTC 244
           +  +   K     +K G T + + PD +  G+ +        K     A L+        
Sbjct: 187 MKETSGPKVTTSSSKTGYTEVIYCPDFERLGNFSSDIIGIFRKHVLDVAMLASSEGVSVY 246

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
           ++  K   +K+                Y +     +  IS     G +E        V  
Sbjct: 247 FNDKKLPIKKF--------------SDYTKLFKLEKESISITEEDGSSE--------VTI 284

Query: 305 AIAWCEENPEITSYCNTILTDEGGTHESGLRVALT-RGIKKYAELTQNKRAISIISDDLM 363
           A    +   +  S+ N + T  GG H  G         +    + ++  + + +   D+ 
Sbjct: 285 AFVERDGKKKPISFVNGLFTKHGGQHVDGWTKPFFANLLSVLNKPSKTYKDLKLSLKDVT 344

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                 +   + +P+F  Q K  L S   + T+ + +      +   +  E  +     +
Sbjct: 345 PYFRFFVKSTVDKPQFDCQNKNMLKSPCLKYTIPDKIITKVCKWT--SVQELKQSSFEKL 402

Query: 424 ERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS------ 477
            + ++    +   +  R+  +            +      T L + EG SA         
Sbjct: 403 LKGKDNNIIKTLNDKKRRPKVSVKEYDPANKAGTTLSEKCT-LIVCEGLSAKTYAVAGIS 461

Query: 478 -------AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530
                      + R    +LPLRGK LNV +A ++K+  N  + DLV A+G      Y  
Sbjct: 462 TGISFTGTDTKKGRDWFGILPLRGKFLNVRNANNDKMIKNTVVTDLVNAMGLTFGMDYST 521

Query: 531 ED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEM--------YDLIEQKHLFLISPP 578
           +     L Y  +II+ D D DG HI  L+L FF+            +L +   +  +  P
Sbjct: 522 QKSRKSLNYGSIIIIPDPDEDGIHIEGLVLNFFHHHFSSLFNPVVPNLKDFPFISSMKIP 581

Query: 579 LFRIT----QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634
           + ++     +G + +     E   K   E K H     EI  FKGLG         T   
Sbjct: 582 IIKVIEKPLKGRREIEFFTHEAFHKFKNENKWHKNH--EIKYFKGLG---------TTKH 630

Query: 635 ANKRTL---LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE---RASFIDDVGT 686
            +   +     V  N D N+ ++ + +       +ADER +++++    A   D + +
Sbjct: 631 EDVPKIFGKKMVVFNIDDNAHENMEKAFKD---EEADERKEWLKQYNPNARTFD-LDS 684


>gi|2196802|gb|AAB80818.1| DNA gyrase beta-subunit [Shewanella putrefaciens]
          Length = 418

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 158/430 (36%), Positives = 241/430 (56%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHA  KFD+++Y++SGGLHGVG+SVVNALS +L +T+ R   ++ Q ++ G+P 
Sbjct: 1   EVIMTVLHAFRKFDHNSYKVSGGLHGVGVSVVNALSKKLQMTIRRAGKVYEQFYTHGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+++        GT I F P    F D   F    L K  +  ++L+  V      +++
Sbjct: 61  APIKEIGDATK-TGTEIRFWPSEDTFSD-VEFHFEILAKRVRELSFLNSGVGIRLVDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + E F + GG+  ++     N++ ++ ++F    E++     TVE A+ W +
Sbjct: 119 N-------KNEFFKYEGGISAFVDYLNRNKTPVNKDVFHFMQERED--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                I  + N I   +GGTH  G R ALTR +  Y E      K   S   DD      
Sbjct: 170 GYQENIFCFTNNIPQRDGGTHLVGFRSALTRNLNSYMENEGYNKKGKTSATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLV  + +  VE  + +  + YL++NP +A   +  +++   
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVFSEVKTAVEQTMGEKLNDYLLENPADAELFVGKIVDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +E++IVEGD AGGSAKQ RNR N
Sbjct: 290 AREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDFAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+  +Q++  L+ ALGC   R +Y  +  RY K+IIMTDA 
Sbjct: 350 QAILPLKGKILNVEKARFDKMLFSQEVATLITALGCGIGRDEYNPDKTRYHKIIIMTDA- 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHILTLL 418


>gi|2196794|gb|AAB80814.1| DNA gyrase beta-subunit [Shewanella putrefaciens]
          Length = 419

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 154/430 (35%), Positives = 242/430 (56%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T L A  KF++++Y++SGGLHGVG+SVVNALS +L +T+ R   ++ Q ++ G+P 
Sbjct: 1   EVIMTVLMALKKFEDNSYDVSGGLHGVGVSVVNALSKKLQMTIRRAGKVYEQFYTHGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+++        GT I F P    F D   F    L K  +  ++L+  V      +++
Sbjct: 61  APIKEIGDATK-TGTEIRFWPSEDTFSD-VEFHFEILAKRVRELSFLNSGVGIRLVDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + E F + GG+  ++     N++ ++ ++F    E++     TVE A+ W +
Sbjct: 119 N-------KNEFFKYEGGISAFVDYLNRNKTPVNKDVFHFMQERED--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                I  + N I   +GGTH  G R ALTR +  Y E      K   S   DD      
Sbjct: 170 GYQENIFCFTNNIPQRDGGTHLVGFRSALTRNLNSYMENEGYNKKGKTSATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +  + YL++NP +A  ++  +++   
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEKLNDYLLENPADAKLIVGKIVDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  +  RY+ + + TDA 
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKTRYQNIFMATDAY 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHILTLL 419


>gi|29652781|gb|AAO87360.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652841|gb|AAO87390.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652851|gb|AAO87395.1| DNA gyrase B [Listeria monocytogenes]
 gi|29653010|gb|AAO87474.1| DNA gyrase B [Listeria monocytogenes]
          Length = 202

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 88/198 (44%), Positives = 121/198 (61%), Gaps = 2/198 (1%)

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 7   RKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILN 66

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 67  VEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTL 126

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+K
Sbjct: 127 FYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYK 184

Query: 619 GLGEMLASQLKETAMDAN 636
           GLGEM   QL +T M+  
Sbjct: 185 GLGEMNPEQLWDTTMNPE 202


>gi|33187323|gb|AAP97524.1| DNA gyrase subunit B [Campylobacter coli]
          Length = 400

 Score =  244 bits (622), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 164/414 (39%), Positives = 228/414 (55%), Gaps = 18/414 (4%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD  TY++SGGLHGVG+SVVNALS +L  TV R   I+ Q+FS G  +S  +   K
Sbjct: 1   AGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFDIIGK 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
            +   GT I F PD  IF     FD   L K  +  AYL+ ++   +  ++       + 
Sbjct: 61  SKK-TGTTIEFWPDDTIFEVT-EFDYDILAKRFRELAYLNPKITINFKDNR-------VG 111

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-S 317
           + E F+F GG+  ++    +  +L     F+   E        VE A+ + +   E   S
Sbjct: 112 KSESFHFEGGISQFVSDLNKKEALTKPIFFSVDEED-----VNVEVALLYNDTYSENLLS 166

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I T +GGTHE+G R+ LTR I  Y E      ++   I  DD+    + ++SV + 
Sbjct: 167 FVNNIKTPDGGTHEAGFRMGLTRVISNYIEANASAREKDSKITGDDVREGLIAVVSVKVP 226

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           EP+F GQTK KL S   +  V  A  +    Y  +NPIEA  ++   +  +  R   +K 
Sbjct: 227 EPQFEGQTKGKLGSSYVRPIVSKASFEYLSKYFEENPIEAKAIMNKALMAARGREAAKKA 286

Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE   +K ++    LPGKLADC       +E+++VEGDSAGGSAKQ R RS QA+LPLRG
Sbjct: 287 RELTRKKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRG 346

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           KILNV  A  +KI  ++QI +++ A GC     +    LRY K+IIMTDADVDG
Sbjct: 347 KILNVEKARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDG 400


>gi|90903296|gb|ABE02213.1| gyrase B [Pseudorhodobacter incheonensis]
          Length = 310

 Score =  244 bits (622), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 104/319 (32%), Positives = 165/319 (51%), Gaps = 22/319 (6%)

Query: 76  HLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILT 135
           H+  EV+DN +DE +AG+AN + V +  +  ++V DNGRGIPV+ H +    S  E+I+T
Sbjct: 1   HMVYEVVDNGIDEALAGHANYVLVKIHADSSVSVRDNGRGIPVDMHQE-EGVSAAEVIMT 59

Query: 136 TLHAGGKFDN-----STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
            LHAGGKF+N     + Y++SGGLHGVG+SVVNALSD L + V R + ++  +F +G   
Sbjct: 60  QLHAGGKFNNTDEGGNAYKVSGGLHGVGVSVVNALSDWLELRVWRNDKVYYARFEKGECT 119

Query: 191 SPLEKKEKVRNKRGTRITFR-----PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
             + ++     ++GT + F       DP+       F    L    +  A+L+  V+   
Sbjct: 120 VHVREEGDAPGEKGTEVRFMASSKLTDPEGTFSNLDFSFKTLETRLRELAFLNSGVRIII 179

Query: 246 SCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
             ++          K E Y+ GG+K +++    +++ +  E      E +G     VE A
Sbjct: 180 EDER-----PAEALKTELYYDGGVKEFVKYLDRSKTAVMPEPIYMLGEVRGI---GVEVA 231

Query: 306 IAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDL 362
           + W +   E    + N I   +GGTH +GLR ALTR I  YA+ +    K  +    DD 
Sbjct: 232 MWWNDSYHENVLPFTNNIPQRDGGTHLAGLRGALTRTINSYAQSSGIAKKEKVDFTGDDA 291

Query: 363 MISAVGILSVFIREPEFAG 381
                 +LSV + +P+F+ 
Sbjct: 292 REGLTCVLSVKVPDPKFSS 310


>gi|148470274|gb|ABQ66084.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  243 bits (621), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 156/428 (36%), Positives = 230/428 (53%), Gaps = 13/428 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFDN+TY++SGGLHGVG+SVVNALS+ L + + ++   F Q + +G P 
Sbjct: 1   EVIMTVLHAGGKFDNNTYKVSGGLHGVGVSVVNALSETLLLDIDQKGQHFHQVYHKGAPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           SPL       ++ GT I F PD  I      F    L    +  ++L+  +    + ++ 
Sbjct: 61  SPLAVTG-SSDRTGTAIRFYPDLTIMET-DQFSYDVLAHRFRELSFLNPSLTITLAEEET 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
           + E         F+  GG++++L    EN+ ++   +F  K  + G     + +      
Sbjct: 119 LRE-------SVFHDEGGIRSFLSFVNENKRVLHEPLFFRKVLENGAT-FEISFQYQDTT 170

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
               + SY N I T EGG+H  G R ALT+ + ++       +   +  +D+      I+
Sbjct: 171 YAETLLSYVNNIPTREGGSHVRGFRSALTKVVNRFIRDKNLNKGEEVKGEDIREGLSAIV 230

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           S+ I  P+F GQTK KL S      +E  L +  +  L +    A  + +  I  ++ R 
Sbjct: 231 SIKIPNPQFEGQTKAKLGSSWVAGAMETFLSESLEDALEKQGAIARAIADKAILSAQARE 290

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             R+ RE   RK  +    LPGKLADC +N    +EL+IVEGDSAGGSAKQ R+R  QA+
Sbjct: 291 AAREARELTKRKNVLEGSNLPGKLADCQENDPAKSELYIVEGDSAGGSAKQGRDRRFQAI 350

Query: 490 LPLRGKILNVASAG-SEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVD 547
           LPL+GKILNV      EK   + ++  L+ A+GC    +      LRY K+IIMTDADVD
Sbjct: 351 LPLKGKILNVEKTKGVEKFITHDEVRALITAVGCGLGDEDFSLKNLRYHKIIIMTDADVD 410

Query: 548 GAHIASLL 555
           G+HI +LL
Sbjct: 411 GSHIRTLL 418


>gi|73852918|ref|YP_294202.1| putative DNA topoisomerase [Emiliania huxleyi virus 86]
 gi|72415634|emb|CAI65871.1| putative DNA topoisomerase [Emiliania huxleyi virus 86]
 gi|283481658|emb|CAZ69774.1| putative DNA topoisomerase [Emiliania huxleyi virus 99B1]
          Length = 1103

 Score =  243 bits (621), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 130/667 (19%), Positives = 239/667 (35%), Gaps = 84/667 (12%)

Query: 50  RILEGLEPVRMRPGMYIGGTDE---------------------KALHHLFSEVIDNAMDE 88
           ++L   + +  RPGMY+GG +                       AL  +  E + NA D 
Sbjct: 7   QVLTQHDHILARPGMYVGGVEPVEYNKEVMTMTGPKHVKEMMVPALLKIIEEPLANASDA 66

Query: 89  VIAGY-ANLIEVSLDG-NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146
                 A  I+V+ D  +  + +  N + + +E  P   +  ++ + ++    G  F + 
Sbjct: 67  SQNNPVAKNIKVTTDQRDSSIKIETNTKFV-IEYVPDGND-YSVALAVSRFMTGTNFGDD 124

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQ--NTIFSQKFSRGIPLSPLEKKEKVRNKR- 203
                 G HG+GI + N  S    V V        +   ++  +        +K  +K  
Sbjct: 125 DESFKLGQHGLGIKLTNVFSKYFEVVVHDPSTKQSYHGIWTNNMYTVEKSVVKKASHKTP 184

Query: 204 GTRITFRPDPKIFGDKAGF---DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
              ITF PD   FG +          +       A  + +  T     ++I  K      
Sbjct: 185 YVSITFIPDLPYFGLRGPLTAGQWDIIHSQVFDLAVTAPKHTTVHLNGEKIPFK------ 238

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCN 320
                  G+K Y+Q  + +      +I   K E  GT R  V   IA          Y N
Sbjct: 239 -------GIKGYIQAVMGD---SLDKICMDKVEVNGTVRLEVAVTIARDHAESI--VYVN 286

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFA 380
              T  G  H+   +                 +  +I    L    + +   +I    F 
Sbjct: 287 GAHTTRGTIHDYIFKNIA----------NALSKKHNINPSMLRGLLLIVAEAWIPNARFT 336

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
            Q K +L +  ++   +  L   F   L +        L   +         +K ++  +
Sbjct: 337 SQAKEELYTPVSKYGFKWDLSQSFIKSLAKTD------LYTSVVNLLHDKDDKKAQKDMK 390

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN----RSNQAVLPLRGKI 496
               +  +             +  EL I EGDSA   A   RN     +N  + PLRGK+
Sbjct: 391 VGKNKIPQFAKYDPATKLFKVNDAELLITEGDSAKQLANVGRNAVKRHANMGLYPLRGKL 450

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR---EEDLRYEKVIIMTDADVDGAHIAS 553
           +N  ++  + +  N++I +L+Q LG     +Y       L Y  ++I TD DVDG+HI+ 
Sbjct: 451 MNAGNSSLKALAANKEISELIQILGITPYKKYDLASARALPYRHLVIFTDQDVDGSHISG 510

Query: 554 LLLTFFYQEMYDLIEQ--KHLFLISPPLFRITQGTKS-VYAHDEEHKQKILEEFKKHGKG 610
           L +      +  L+E    ++   + P+ +IT G  +    + +   ++  ++       
Sbjct: 511 LCIQLIMTLVPSLLEVFPDYIKRFATPILKITSGKHAGKTFYTDAEYREYTDKHPDSKNA 570

Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN-SLKDTQDSINKLMGTKADE 669
              +  +KGLG       K+   + +K     + IN     S +  + + +  M   + E
Sbjct: 571 --SVKYYKGLGTSTDKDAKQYFTEWSKNV---ITINNTGQPSTEAMKLAFDAKM---SAE 622

Query: 670 RFKFIQE 676
           R +++  
Sbjct: 623 RREYLAN 629


>gi|309809774|ref|ZP_07703628.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus iners SPIN 2503V10-D]
 gi|308169953|gb|EFO71992.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus iners SPIN 2503V10-D]
          Length = 240

 Score =  243 bits (621), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 95/222 (42%), Positives = 138/222 (62%), Gaps = 2/222 (0%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93
           A   +  ++ Y+AS I++L GLE VR RPGMYIG T  + LHHL  E+IDN++DE +AG+
Sbjct: 11  ALNFEKRAEKYNASQIQVLGGLEAVRKRPGMYIGNTSIQGLHHLVWEIIDNSIDEKLAGF 70

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A  IE++++ +G +TV D+GRGIPV+   K   +S LE + T LHAGGKF    Y++SGG
Sbjct: 71  ATKIEITVNEDGSVTVEDDGRGIPVDIQKK-TGRSALETVFTVLHAGGKFGGGGYKVSGG 129

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPD 212
           LHGVG SVVNALS +L+V V R    +   F+ G     + +  +V   + GT + F PD
Sbjct: 130 LHGVGASVVNALSTKLNVIVMRDGKKYCIDFNHGRVEQEVHEVGEVPLTQHGTIVRFYPD 189

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
           P IF +   FD   L    +  A+L+  +K  ++  ++I +K
Sbjct: 190 PDIFTETTVFDDRILKNRIRELAFLNKGLKLTFTDKEKIQQK 231


>gi|148971443|gb|ABR20259.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 428

 Score =  243 bits (621), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 175/434 (40%), Positives = 246/434 (56%), Gaps = 15/434 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD  TY++SGGLHGVG+S VNALS  L  TV R   I+ Q++++GIPL
Sbjct: 1   EVIMTVLHAGGKFDKGTYKVSGGLHGVGVSCVNALSTHLQATVYRDGRIYQQEYAKGIPL 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            P+++       RGT I F+PD  IF     ++ + +       AYL+  +       +E
Sbjct: 61  YPVKEIGVTTE-RGTTIHFQPDISIFTTAI-YNYSTIAARLSELAYLNVGLTIELVDFRE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             +      ++ FY  GGL  ++    + R  +         EK   +   V+ A+++  
Sbjct: 119 -KDANDKFLQQTFYSEGGLAEFVTYLDDTREKLIPHPIVIGGEK---YDVPVQVALSYNT 174

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                + SY N I T EGGTH +G R ALTR +K YAE +    K  + II DD      
Sbjct: 175 GFTENVVSYVNNINTVEGGTHVAGFRRALTRTLKSYAEKSNLLEKAKVEIIGDDFREGLT 234

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERS 426
            ++SV + EP+F GQTKTKL + D    V+  + +  + YL ++P EA  ++  VI    
Sbjct: 235 AVISVKVAEPQFEGQTKTKLGNADVLGAVDICVSEVLESYLEEHPQEAKTIVSKVILAAQ 294

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
             +  R+ +  V RK  +    LPGKLADCS +     ELF+VEGDSAGG+AKQ R+R  
Sbjct: 295 ARQAARKAREMVQRKNVLTGGGLPGKLADCSDSDPAVCELFLVEGDSAGGTAKQGRDRRF 354

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY-----REEDLRYEKVIIM 541
           QA+LPLRGKILNV  A   +I +N+Q+ +++ ALG    ++        E LRY KVIIM
Sbjct: 355 QAILPLRGKILNVEKAQEHRIYDNEQLRNMIMALGITFGTEEDAKAINLEKLRYYKVIIM 414

Query: 542 TDADVDGAHIASLL 555
           TDADVDG+HI +LL
Sbjct: 415 TDADVDGSHIRTLL 428


>gi|315286848|ref|ZP_07872181.1| DNA gyrase subunit B [Listeria ivanovii FSL F6-596]
 gi|313630889|gb|EFR98582.1| DNA gyrase subunit B [Listeria ivanovii FSL F6-596]
          Length = 162

 Score =  243 bits (621), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 62/167 (37%), Positives = 94/167 (56%), Gaps = 6/167 (3%)

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ M  L++  ++++  PP
Sbjct: 1   AMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGYIYIAQPP 60

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L++I  G +  Y + +   +  L    K    K  I R+KGLGEM   QL +T M+   R
Sbjct: 61  LYQIKHGKQIEYVYSDGQLEDYLASLDKD--TKFSIQRYKGLGEMNPEQLWDTTMNPEHR 118

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           TLL+V I   +    D  ++   LMG + + R KFI++ A ++ ++ 
Sbjct: 119 TLLQVNIKDAI----DADETFEMLMGDRVEPRRKFIEDNAQYVKNLD 161


>gi|29652833|gb|AAO87386.1| DNA gyrase B [Listeria monocytogenes]
          Length = 203

 Score =  243 bits (621), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 88/198 (44%), Positives = 121/198 (61%), Gaps = 2/198 (1%)

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 8   RKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILN 67

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 68  VEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTL 127

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+K
Sbjct: 128 FYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYK 185

Query: 619 GLGEMLASQLKETAMDAN 636
           GLGEM   QL +T M+  
Sbjct: 186 GLGEMNPEQLWDTTMNPE 203


>gi|301477624|dbj|BAJ12097.1| DNA gyrase subunit beta [Pandoraea sp. NS15]
          Length = 418

 Score =  243 bits (621), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 158/430 (36%), Positives = 237/430 (55%), Gaps = 29/430 (6%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL------------EKKEKV 199
           GGLHGVG+S VNALS  L +TV R       +F RG+P +              +     
Sbjct: 1   GGLHGVGVSCVNALSSYLKLTVRRDGKKHFMEFHRGVPQNREIEVVDGVETSPLKVVGDT 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            +KRGT + F  D  IFG    F    L K  +  ++L+  V+   +  +   E      
Sbjct: 61  -DKRGTEVHFLADETIFGKV-EFHYDILAKRMRELSFLNNGVRIRLTDLRTGKEDD---- 114

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              F F GG+K +++   ++++++   +F    E+ G     VE A+ W +     +  +
Sbjct: 115 ---FAFGGGVKGFVEFINKSKTVLHPTVFHVMGERDGI---GVEVAMQWNDSYNESVLCF 168

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +GLR A+TR I KY   ++   K  +    DD+      +LSV + E
Sbjct: 169 TNNIPQRDGGTHLTGLRAAMTRVINKYISESEIAKKAKVETTGDDMREGLTCVLSVKVPE 228

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F+ QTK KLVS + +  VE  +    + +L + PI+A  +   ++E +  R   RK R
Sbjct: 229 PKFSSQTKDKLVSSEVRAPVEEYVAKALEDFLQETPIDAKIICSKIVEAARARDAARKAR 288

Query: 437 EVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E+ R+   +  + LPGKLADC +      E+++VEGDSAGGSAKQ R+R  QA+LPLRGK
Sbjct: 289 EMTRRKGVLDGVGLPGKLADCQEKDPALCEIYVVEGDSAGGSAKQGRDRKFQAILPLRGK 348

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           +LNV  A  +K+ +++QI+ L+ ALGC   +  Y  + LRY ++IIMTDADVDGAHI +L
Sbjct: 349 VLNVEKARFDKLISSEQIVTLITALGCGIGKDDYNIDKLRYHRIIIMTDADVDGAHIRTL 408

Query: 555 LLTFFYQEMY 564
           LLTF Y+++ 
Sbjct: 409 LLTFLYRQVP 418


>gi|29652909|gb|AAO87424.1| DNA gyrase B [Listeria monocytogenes]
          Length = 190

 Score =  243 bits (620), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 89/191 (46%), Positives = 119/191 (62%), Gaps = 2/191 (1%)

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
           R PGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I
Sbjct: 2   RNPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRI 61

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ M  L+
Sbjct: 62  LANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLL 121

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           +  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+KGLGEM   Q
Sbjct: 122 DAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYKGLGEMNPEQ 179

Query: 628 LKETAMDANKR 638
           L +T M+   R
Sbjct: 180 LWDTTMNPEHR 190


>gi|163256315|dbj|BAF95668.1| DNA gyrase subunit B [Bradyrhizobium sp. KO3H]
          Length = 275

 Score =  243 bits (620), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 104/285 (36%), Positives = 159/285 (55%), Gaps = 11/285 (3%)

Query: 76  HLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILT 135
           H+  EV+DNA+DE +AG+A+ + V+L+ +  +TV D+GRGIPV+ H K    S  E+I+T
Sbjct: 1   HMVYEVVDNAIDEALAGHASRVLVTLNADNSVTVYDDGRGIPVDIH-KGEGISAAEVIMT 59

Query: 136 TLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK 195
            LHAGGKFD ++Y++SGGLHGVG+SVVNALS +L + + R +     +F+ G  ++PL  
Sbjct: 60  QLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLELRIWRDDKEHYIEFAHGDAVAPLRV 119

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
             +   KRGT +TF    + F +   +D A L    +  A+L+  V    S  +   EK 
Sbjct: 120 VGEAPGKRGTEVTFHAAVETFKN-VEYDFATLEHRLRELAFLNSGVNIVLSDMRHAVEKR 178

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI 315
                EE ++ GG++ +++    N+  I       ++E  G     VE A+ W +   E 
Sbjct: 179 -----EEMHYSGGVEEFVKYLDRNKKAIVPAPIMVRSEANGI---GVEAALWWNDSYHEN 230

Query: 316 -TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359
              + N I   +GGTH +G R ALTR +  YAE    K  I++  
Sbjct: 231 VLCFTNNIPQRDGGTHLAGFRGALTRQVNGYAEANAKKEKIALTG 275


>gi|33187345|gb|AAP97535.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni]
          Length = 402

 Score =  243 bits (620), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 166/416 (39%), Positives = 229/416 (55%), Gaps = 18/416 (4%)

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFD  TY++SGGLHGVG+SVVNALS +L  TV R   I+ Q+FS G  +S   
Sbjct: 1   TVLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFG 60

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
              K +   GT I F PD +IF     FD   L K  +  AYL+ ++   +  ++     
Sbjct: 61  VIGKSKK-TGTTIEFWPDDQIFEVT-EFDYEILAKRFRELAYLNPKITINFKDNR----- 113

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE 314
             + + E F+F GG+   +    +  +L  +  F+   E        VE A+ + +   E
Sbjct: 114 --VGKHESFHFEGGISQXVTDLNKKEALTKAIFFSVDEED-----VNVEVALLYNDTYSE 166

Query: 315 IT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
              S+ N I T +GGTHE+G R+ LTR I  Y E      ++   I  DD+    + I+S
Sbjct: 167 NLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEANASVREKDNKITGDDVREGLIAIVS 226

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V + EP+F GQTK KL S   +  V  A  +    Y  +NPIEA  ++   +  +  R  
Sbjct: 227 VKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREA 286

Query: 432 RRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +K RE   +K ++    LPGKLADC       +E+++VEGDSAGGSAKQ R RS QA+L
Sbjct: 287 AKKARELTRKKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAIL 346

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADV 546
           PLRGKILNV  A  +KI  ++QI +++ A GC     +    LRY K+IIMTDADV
Sbjct: 347 PLRGKILNVEKARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADV 402


>gi|29652749|gb|AAO87344.1| DNA gyrase B [Listeria monocytogenes]
          Length = 203

 Score =  243 bits (620), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 89/205 (43%), Positives = 124/205 (60%), Gaps = 2/205 (0%)

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +R +    + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+L
Sbjct: 1   AKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAIL 60

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           P+RGKILNV  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAH
Sbjct: 61  PIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAH 120

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           I +LLLT FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  
Sbjct: 121 IRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDT 178

Query: 611 KIEISRFKGLGEMLASQLKETAMDA 635
           K  I R+KGLGEM   QL +T M+ 
Sbjct: 179 KYSIQRYKGLGEMNPEQLWDTTMNP 203


>gi|215254256|gb|ACJ64127.1| DNA gyrase subunit B [Vibrio agarivorans]
          Length = 418

 Score =  243 bits (620), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 155/422 (36%), Positives = 238/422 (56%), Gaps = 15/422 (3%)

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           +I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +  G P +
Sbjct: 1   VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGQIHTQTYHHGEPQA 60

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
           PL       +K GT I F P  + F +   F    L K  +  ++L+  V      ++E 
Sbjct: 61  PLGVIGDT-DKTGTEIRFWPSEETFSN-TEFHYDILAKRLRELSFLNSGVSIKLRDERE- 117

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
                  + + F + GG++ +++    N++ I  ++F   +E++      VE A+ W + 
Sbjct: 118 -----EDKGDHFMYEGGIQAFVEHLNTNKTPIIEKVFHFNSERED--GIAVEVAMQWNDG 170

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVG 368
               I  + N I   +GGTH +G R ALTR +  + +      K   +   DD       
Sbjct: 171 YQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTA 230

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSE 427
           ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +L+++P EA  +   +I     
Sbjct: 231 VISVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIEHPAEAKTVCTKIIDAARA 290

Query: 428 ERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
               R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQ
Sbjct: 291 RDAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQ 350

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADV 546
           A+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDAD 
Sbjct: 351 AILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADA 410

Query: 547 DG 548
             
Sbjct: 411 TA 412


>gi|226428998|gb|ACO55119.1| DNA gyrase [Allochromatium vinosum DSM 180]
 gi|226429000|gb|ACO55120.1| DNA gyrase [Allochromatium minutissimum]
 gi|226429002|gb|ACO55121.1| DNA gyrase [Allochromatium sp. AX1YPE]
 gi|226429006|gb|ACO55123.1| DNA gyrase [Allochromatium vinosum]
 gi|226429008|gb|ACO55124.1| DNA gyrase [Allochromatium vinosum]
          Length = 280

 Score =  243 bits (620), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 103/284 (36%), Positives = 157/284 (55%), Gaps = 14/284 (4%)

Query: 77  LFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTT 136
           +  EV+DN++DE +AGY + + V+L  +G ++VVD+GRGIPV+ H +  N+S  E+ILT 
Sbjct: 1   MVFEVVDNSIDEALAGYCSTVSVTLHADGSVSVVDDGRGIPVDIHAE-ENRSAAEVILTV 59

Query: 137 LHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK 196
           LHAGGKFD+++Y++SGGLHGVG+SVVNALS+ L++ + R   +  Q++  G P+ PL   
Sbjct: 60  LHAGGKFDDNSYKVSGGLHGVGVSVVNALSERLYLRIRRGGHLHEQEYRLGEPVYPLRVI 119

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
                  GT I F P  +IF +   F    L K  +  ++L+  V+   S +        
Sbjct: 120 GDTEE-TGTEIRFYPSGEIFSN-LDFHYDILAKRLRELSFLNSGVRIALSDE-------A 170

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
               + F + GG++ +++   +N+  I   +    TE++      VE AI W       I
Sbjct: 171 SGRHDVFEYEGGIRAFVENLNQNKEPIHPTVVYFSTERQDI---GVELAIQWNNSYQETI 227

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359
             Y NTI   +GGTH +GLR ALTR +  Y E     +   I  
Sbjct: 228 FCYTNTIPQRDGGTHLAGLRAALTRTLNGYIEREGLDKNQKIRP 271


>gi|307939348|gb|ADN95865.1| DNA gyrase B [Hymenobacter sp. NS/2(2010)]
          Length = 429

 Score =  243 bits (620), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 169/435 (38%), Positives = 243/435 (55%), Gaps = 23/435 (5%)

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           +T LHAGGKFD ++Y+ SGGLHGVG+S VNALS   HVTV R   I+ Q++  G+P   +
Sbjct: 1   MTVLHAGGKFDKNSYKTSGGLHGVGVSCVNALSTHTHVTVKRDGHIYEQEYVIGVPQYDV 60

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
            K       RGT + F+PD  IF +   +   R+    +  +YL+  ++   +  +   E
Sbjct: 61  RKVGDTTE-RGTLVRFQPDETIFDETLIYSYERIATRLRELSYLNRGIRIVLTDLRTP-E 118

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP 313
             G P++ EFY  GG+  Y+Q    +R+++  +     TE+       VE A  + +   
Sbjct: 119 DGGEPQQSEFYSQGGVAEYVQYLDNSRTVLMHKPVYVATER----GIPVEVAFQYNDSFQ 174

Query: 314 EI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGIL 370
           E   SY N I T EGGTH SG R A+TR +K YAE +    K  + I  DD       ++
Sbjct: 175 EHIYSYVNNINTHEGGTHVSGFRAAITRVLKAYAEKSGEVAKAKVEIQGDDFREGLTAVI 234

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV + EP+F GQTK KL + +    V   + +  + YL +NP EA  +++ VI  ++ R+
Sbjct: 235 SVKVAEPKFEGQTKGKLGNSEVNGAVNTVVGEILNQYLEENPKEARVIIDKVILAAKARI 294

Query: 431 RRRKQREVNRKTAIRKLRL-PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             +K RE+ ++  +      PGKLADCS++     E+++VEGDSAGG+AKQ RNR+ QA+
Sbjct: 295 AAKKAREMVQRKTVLGSNSLPGKLADCSESDPEICEIYLVEGDSAGGTAKQGRNRAFQAI 354

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-------------DLRYE 536
           LPLRGKILNV  A   +I  N++I +++ ALG         E              LRY 
Sbjct: 355 LPLRGKILNVEKAQEHRILENEEIRNMITALGVTFGMPADPETGAEADARALNIAKLRYH 414

Query: 537 KVIIMTDADVDGAHI 551
           KVIIMTDA VDG+HI
Sbjct: 415 KVIIMTDAXVDGSHI 429


>gi|110612711|gb|ABG78318.1| GyrB [uncultured bacterium]
          Length = 414

 Score =  243 bits (620), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 155/420 (36%), Positives = 239/420 (56%), Gaps = 11/420 (2%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD+STY++SGGLHGVG+S VNALS E  V + R    + Q +S G P +PL +     
Sbjct: 1   GKFDSSTYKVSGGLHGVGVSCVNALSQEFSVEIWRDGLTWEQDYSCGDPTTPLRQTG-TS 59

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
            +RGTR+ F PD  IF     ++   L +  +  A+L+  +    + ++ I  K G P +
Sbjct: 60  RRRGTRVHFLPDKSIFAVT-EYNYDTLAQRLREMAFLNKGLSITLTDERNIDPKTGEPRR 118

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YC 319
            EF + GG+  +++     +S++  +    +  + G     ++ A+ + +   E    + 
Sbjct: 119 GEFRYAGGISEFIRHLNRGKSVLHGKPIAMEASRDGV---EIDIALQYNDGYSETLFSFA 175

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREP 377
           N I T +GGTH SG R ALTR I    +     + +  ++  DD+    V ++SV + +P
Sbjct: 176 NNINTVDGGTHLSGFRSALTRTINAVGQSLGLFKDVKENLSGDDVREGLVAVVSVKLPQP 235

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F GQTK KL + D   TV+  + +    +L QNP  A +++   I+ +  R   RK R+
Sbjct: 236 QFEGQTKGKL-NSDIAGTVQAFVNERLGAFLEQNPPIAKRIINKAIDAARAREAARKARD 294

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              RK A+    LPGKLADCS+      EL++VEG+SAGG+AKQ R+R  QA+LPL+GKI
Sbjct: 295 LTRRKGALDGGGLPGKLADCSERNPERCELYLVEGESAGGTAKQGRDRRFQAILPLKGKI 354

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDADVDGAHIASLL 555
           LNV  A  +K+  +++I  ++ ALGC       +   LRY K+I++TDADVDG+HI +LL
Sbjct: 355 LNVEKARYDKMLGHEEIRAMITALGCGIGKDDFDPSKLRYHKLILITDADVDGSHIRTLL 414


>gi|269799082|gb|ACZ43819.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 370

 Score =  243 bits (619), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 127/381 (33%), Positives = 207/381 (54%), Gaps = 16/381 (4%)

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+   I V++  +G ++V D+GRGIPV+ H +    S  E+ILT LHAGGKFD+++Y++S
Sbjct: 1   GHCTDIVVTIHDDGSVSVSDDGRGIPVDIHEE-EGVSAAEVILTVLHAGGKFDDNSYKVS 59

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS++L +T+ R   I +Q +  G+P  P+ +   V +  GT + F P
Sbjct: 60  GGLHGVGVSVVNALSEKLELTIFRHGKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFWP 118

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++E        + + F + GG+K 
Sbjct: 119 SHETFTNTL-FHYDILAKRLRELSFLNSGVSIKLIDERED------GKSDHFVYEGGIKA 171

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++     N++ I+ + F    E++     TVE A+ W +     I  + N I   +GGTH
Sbjct: 172 FVDYLNVNKTPINKDAFHFSVERED--GITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTH 229

Query: 331 ESGLRVALTRGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
            +G R ALTR +  Y E     +  ++ +   DD       ++SV + +P+F+ QTK KL
Sbjct: 230 LAGFRGALTRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKL 289

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRK 446
           VS + +  VE A+ +    YL++NP EA+ ++  +I+        R+ +    RK A+  
Sbjct: 290 VSSEVKSAVEQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKARDMTRRKGALDL 349

Query: 447 LRLPGKLADCSQNIAHGTELF 467
             LPGKLADC +     +EL+
Sbjct: 350 AGLPGKLADCQEKDPALSELY 370


>gi|156071394|dbj|BAF75804.1| DNA gyrase subunit B [Bradyrhizobium canariense]
          Length = 277

 Score =  243 bits (619), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 106/287 (36%), Positives = 160/287 (55%), Gaps = 11/287 (3%)

Query: 76  HLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILT 135
           H+  EV+DNA+DE +AG+A  ++V L+ +  +TV D+GRGIPV+ H K    S  E+I+T
Sbjct: 1   HMVYEVVDNAIDEALAGHATRVDVILNADNSVTVRDDGRGIPVDIH-KGEGISAAEVIMT 59

Query: 136 TLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK 195
            LHAGGKFD ++Y++SGGLHGVG+SVVNALS +L + + R N     +F+ G  ++PL+ 
Sbjct: 60  QLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAHGDAVAPLKV 119

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
                 +RGT +TF+   + F +   +D A L    +  A+L+  V    S  +   EK 
Sbjct: 120 VGDAPGRRGTEVTFQASTETFKN-IEYDFATLEHRLRELAFLNSGVNIALSDMRHAVEKR 178

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI 315
                EE ++ GG++ +++    N+  I       + E  G     VE A+ W +   E 
Sbjct: 179 -----EEMHYSGGVEEFVKYLDRNKKAIVPAPIMVRAESNGI---GVEAALWWNDSYHEN 230

Query: 316 -TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDD 361
              + N I   +GGTH +G R ALTR +  YAE    K  I++  DD
Sbjct: 231 VLCFTNNIPQRDGGTHLAGFRGALTRQVNGYAEANAKKEKIALTGDD 277


>gi|29652867|gb|AAO87403.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652891|gb|AAO87415.1| DNA gyrase B [Listeria monocytogenes]
          Length = 187

 Score =  243 bits (619), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 88/189 (46%), Positives = 118/189 (62%), Gaps = 2/189 (1%)

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I  
Sbjct: 1   PGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILA 60

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ M  L++ 
Sbjct: 61  NEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDA 120

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
            ++++  PPL++I  G +  Y + +   +  L      G  K  I R+KGLGEM   QL 
Sbjct: 121 GYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYKGLGEMNPEQLW 178

Query: 630 ETAMDANKR 638
           +T M+   R
Sbjct: 179 DTTMNPEHR 187


>gi|33187313|gb|AAP97519.1| DNA gyrase subunit B [Campylobacter jejuni subsp. doylei]
          Length = 400

 Score =  243 bits (619), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 162/414 (39%), Positives = 229/414 (55%), Gaps = 18/414 (4%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD  TY++SGGLHGVG+SVVNALS +L  TV R   I+ Q+FS G  +S      K
Sbjct: 1   AGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGK 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
            +   GT I F PD +IF     FD   L K  +  AYL+ ++   +  ++       + 
Sbjct: 61  SKK-TGTTIEFWPDDQIFEVT-EFDYEILAKRFRELAYLNPKITINFKDNR-------VG 111

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-S 317
           + E F+F GG+  ++    +  +L  +  F+   E        VE A+ + +   E   S
Sbjct: 112 KHESFHFKGGISQFVTDLNKKEALTKAIFFSVDEED-----VNVEVALLYNDTYSENLLS 166

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I T +GGTHE+G R+ LTR I  Y E      ++   I  +D+    + ++SV + 
Sbjct: 167 FVNNIKTPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGEDVREGLIAVVSVKVP 226

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           EP+F GQTK KL S   +  V  A  +    Y  +NP+EA  ++   +  +  R   +K 
Sbjct: 227 EPQFEGQTKGKLGSTYVRPIVSKASFEYLTKYFEENPVEAKAIMNKALMAARGREAAKKA 286

Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE   +K ++    LPGKLADC       +E+++VEGDSAGGSAKQ R RS QA+LPLRG
Sbjct: 287 RELTRKKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRG 346

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           KILNV  A  +KI  ++QI +++ A GC     +    LRY K+IIMTDADVDG
Sbjct: 347 KILNVEKARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDG 400


>gi|119369974|gb|ABL68001.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  243 bits (619), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 150/430 (34%), Positives = 227/430 (52%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD ++Y++SGGLHGVGISVVNALS+ L +T+ R      Q+++ G P 
Sbjct: 1   EVIMTVLHAGGKFDQNSYKVSGGLHGVGISVVNALSEFLDLTIYRDGYEHHQRYALGEPC 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PLE      N+ GT + F+P P+IF D        L K  +  ++L+   +     ++ 
Sbjct: 61  APLEVVRPA-NRTGTIVRFKPSPRIFSD-CTMHYDLLAKRLRELSFLNSGARIVLVDER- 117

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   +++ F + GG+  ++     N+  +  ++ + + E+   +   V+ A+ W +
Sbjct: 118 ------ADKQDAFEYQGGIAAFVVDLNRNKDPLHPQVISFQAERDKVY---VDLALQWND 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAV 367
                +  Y N I   +GGTH +G R  LTR +  Y E T   +   +    DD      
Sbjct: 169 SYQENVFCYTNNIPQRDGGTHLAGFRAGLTRTLNHYIEETGLAKRAKVALTGDDAREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F  + KT      ++                + P       +    R E
Sbjct: 229 AVLSVKVADPKFPRKPKTNSYPRRSRPLSSRCSTSLQAATSWKTPRLPRPQQKKWSRRPE 288

Query: 428 ERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                RK RE+  RK A+    LPGKLADC +      EL++VEGDSAGGSAKQAR+R  
Sbjct: 289 RARPPRKAREMTRRKGALDIAGLPGKLADCQERDPSLCELYLVEGDSAGGSAKQARDRRF 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++ ++  L+ ALG          + LRY ++IIMTDAD
Sbjct: 349 QAILPLKGKILNVERARFDKMLSSAEVGTLITALGTGIGRDDFNADKLRYHRIIIMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|213556940|gb|ACJ53761.1| DNA gyrase B [Pseudoruegeria sp. HD-43]
          Length = 407

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 156/416 (37%), Positives = 228/416 (54%), Gaps = 14/416 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKFD+++Y++SGGLHGVG+SVVNALSD L + +         +F  G     LE   
Sbjct: 1   HAGGKFDSNSYKVSGGLHGVGVSVVNALSDWLDLRIWHNGKEHYARFEHGDCTKHLEVAG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
               ++GT +TF      F D   +    L    +  A+L+  V+     ++        
Sbjct: 61  DANGEKGTEVTFMASTDTFSDLN-YVFKTLENRLRELAFLNSGVRIILRDER-----PAE 114

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-T 316
           P + E  + GG++ +++    +++    E      E+ G     VE A+ W +   E   
Sbjct: 115 PLQVELCYEGGVREFVKYLDRSKASAMPEPIYMTGERDGI---GVELAMWWNDSYHENVL 171

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
            + N I   +GGTH +G R ALTR I  YA  +    K  ++   DD       +LSV +
Sbjct: 172 PFTNNIPQRDGGTHLAGFRGALTRTINLYAGSSGIARKEKVNFTGDDAREGLTCVLSVKV 231

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            +P+F+ QTK KLVS + +  VE  + +    +  +NP +A  ++  +IE +  R   RK
Sbjct: 232 PDPKFSSQTKDKLVSSEVRPAVEGMVNEKLGEWFEENPGQAKVIVGKIIEAALAREAARK 291

Query: 435 QRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            RE   RKTA+    LPGKLADC +     +E+F+VEGDSAGGSAKQ R+R+NQAVLPLR
Sbjct: 292 ARELTRRKTAMDVASLPGKLADCQEKDPAKSEIFLVEGDSAGGSAKQGRSRANQAVLPLR 351

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDG 548
           GKILNV  A  +++ ++Q+I  L+ ALG    R ++    LRY K++IMTDADVDG
Sbjct: 352 GKILNVERARFDRMLSSQEIGTLITALGTGIGRDEFDISKLRYHKIVIMTDADVDG 407


>gi|183987568|gb|ACC65774.1| topoisomerase II [Sarcomyxa serotina]
          Length = 696

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 116/538 (21%), Positives = 212/538 (39%), Gaps = 38/538 (7%)

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG---TRITFR 210
            HG G  + N  S E  V  A   T    K +    +S + K +  +N RG   TRITFR
Sbjct: 1   RHGYGAKLTNIYSHEFTVETADAKTAQKYKQTWSNNMSKVGKPKITKNARGEEWTRITFR 60

Query: 211 PDPKIFGDK--AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           PD K FG        A  L K     A     +K   + D+    K    ++    +   
Sbjct: 61  PDLKRFGMDSIDEDTAGLLRKRVYDMAGTVKNIKVFLNDDRL---KVKNFKQYIEMYISS 117

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGG 328
                       +     +   +           E   A  +   +  S+ N+I T +GG
Sbjct: 118 AAAEATDNAGGAAQPKPTVIYEQISN------RWEVGFAVSDGTFQHISFANSIATTKGG 171

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           TH + +   + +       + +  +A ++ +  +       ++  I  P F  QTK  + 
Sbjct: 172 THVTVVSDQIAK--NLITAIAKKNKAATVKAAQIKNHMWIFVNALIENPTFDSQTKETMT 229

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKL 447
              ++   +  L + F   ++++P     +++ V+  ++ +  ++ ++    +++ +  L
Sbjct: 230 LPSSKFGTKPVLTENFMKKVMKSP-----IIDHVLNWAKFKADQQIKKTDGTKRSRLTGL 284

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGS 504
                  +     A    L + EGDSA   A        R N  V PLRGKILNV  A  
Sbjct: 285 PKLADANNAGTKNASKCTLILTEGDSAKALAVAGLGVVGRDNFGVFPLRGKILNVREASH 344

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           ++I  NQ+I ++   +G +    Y     LRY +++IMTD D DG+HI  LL+ +     
Sbjct: 345 DQIMKNQEIQNIKTIMGLQHNKSYTGVSSLRYGRLMIMTDQDHDGSHIKGLLINYLDHFF 404

Query: 564 YDLIEQK-HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
             L++    L     P+ R+ +G     ++         ++  ++       K E   FK
Sbjct: 405 PSLLKLPDFLVEFVTPIVRVWKGTGNKKQTKDFFTIPEFEQWQQQTPDF--HKWESKYFK 462

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
           GLG    S  ++     +K  +            +  + + +K    KADER +++++
Sbjct: 463 GLGTSGDSDARDYFSHMSKHMIPFA--PTQEGDKELIELAFSK---KKADERKEWLRQ 515


>gi|269799090|gb|ACZ43823.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 368

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 126/376 (33%), Positives = 204/376 (54%), Gaps = 16/376 (4%)

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AG+   I V++  +G ++V D+GRGIPV+ H +    S  E+ILT LHAGGKFD+++Y++
Sbjct: 1   AGHCTDIVVTIHDDGSVSVSDDGRGIPVDIHEE-EGVSAAEVILTVLHAGGKFDDNSYKV 59

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS++L +T+ R   I +Q +  G+P  P+ +   V +  GT + F 
Sbjct: 60  SGGLHGVGVSVVNALSEKLELTIFRHGKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFW 118

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F    L K  +  ++L+  V      ++E        + + F + GG+K
Sbjct: 119 PSHETFTNTL-FHYDILAKRLRELSFLNSGVSIKLIDERED------GKSDHFVYEGGIK 171

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            ++     N++ I+ + F    E++     TVE A+ W +     I  + N I   +GGT
Sbjct: 172 AFVDYLNVNKTPINKDAFHFSVERED--GITVEVAMQWNDGFQEGIYCFTNNIPQRDGGT 229

Query: 330 HESGLRVALTRGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           H +G R ALTR +  Y E     +  ++ +   DD       ++SV + +P+F+ QTK K
Sbjct: 230 HLAGFRGALTRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDK 289

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIR 445
           LVS + +  VE A+ +    YL++NP EA+ ++  +I+        R+ +    RK A+ 
Sbjct: 290 LVSSEVKSAVEQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKARDMTRRKGALD 349

Query: 446 KLRLPGKLADCSQNIA 461
              LPGKLADC +   
Sbjct: 350 LAGLPGKLADCQEKDP 365


>gi|212659907|gb|ACJ37010.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 271

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 100/283 (35%), Positives = 163/283 (57%), Gaps = 13/283 (4%)

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           HH+  EV+DN++DE +AG+A+ I V +  +G ++V DNGRGIPV+ H K    S  E+IL
Sbjct: 1   HHMVFEVVDNSVDEALAGHADSILVKIHVDGSVSVSDNGRGIPVDIH-KEEGVSAAEVIL 59

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+ L + + R    + Q++  G P  PL+
Sbjct: 60  TVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSERLWLDIWRDGYHYQQEYVLGDPQYPLK 119

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
           +  +V  KRGT + F+P  +IF D   F    L K  +  ++L+  +K     ++     
Sbjct: 120 QL-EVSAKRGTTLRFKPAKEIFSD-VEFHYENLAKRLRELSFLNSGLKVSLIDERG---- 173

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313
                +++F++ GG++++++   + ++ + S + +   E  G     V+ A+ W +    
Sbjct: 174 --EGRRDDFHYEGGIRSFVEHLAQLKTPLHSNVISVTGEHNGI---VVDVALQWTDAYQE 228

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
            +  + N I   +GGTH +G R ALTR +  Y E     R   
Sbjct: 229 TMYCFTNNIPQKDGGTHLAGFRAALTRTLGNYIEQNGIARQAK 271


>gi|33187349|gb|AAP97537.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni]
          Length = 400

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 165/414 (39%), Positives = 229/414 (55%), Gaps = 18/414 (4%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD  TY++SGGLHGVG+SVVNALS +L  TV R   I+ Q+FS G  +S      K
Sbjct: 1   AGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGK 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
            +   GT I F PD +IF     FD   L K  +  AYL+ ++   +  ++       + 
Sbjct: 61  SKK-TGTTIEFWPDDQIFEVT-EFDYEILAKRFRELAYLNPKITINFKDNR-------VG 111

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-S 317
           + E F+F GG+  ++    +  +L  +  F+   E        VE A+ + +   E   S
Sbjct: 112 KHESFHFEGGISQFVTDLNKKEALTKAIFFSVDEED-----VNVEVALLYNDTYSENLLS 166

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I T +GGTHE+G R+ LTR I  Y E      ++   I  DD+    + I+SV + 
Sbjct: 167 FVNNIKTPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGDDVREGLIAIVSVKVP 226

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           EP+F GQTK KL S   +  V  A  +    Y  +NPIEA  ++   +  +  R   +K 
Sbjct: 227 EPQFEGQTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKA 286

Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE   +K ++    LPGKLADC       +E+++VEGDSAGGSAKQ R RS QA+LPLRG
Sbjct: 287 RELTRKKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRG 346

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           KILNV  A  +KI  ++QI +++ A GC     +    LRY K+IIMTDADVDG
Sbjct: 347 KILNVEKARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDG 400


>gi|19909687|dbj|BAB87039.1| DNA gyrase subunit B [Burkholderia cepacia]
          Length = 305

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 107/316 (33%), Positives = 160/316 (50%), Gaps = 28/316 (8%)

Query: 73  ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE--NHPKFP-NKST 129
            LHHL  EV+DN++DE +AGY N I V++  +  ++V DNGRGIP +   + K    +S 
Sbjct: 1   GLHHLVFEVLDNSIDEALAGYCNDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSA 60

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            EI++T LHAGGKFD ++Y++SGGLHGVG+S VNALS  L +TV R       +F RGI 
Sbjct: 61  AEIVMTELHAGGKFDQNSYKVSGGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGIA 120

Query: 190 LSPLEKK-----------EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLS 238
              + ++                 RGT + F  DP IFG    +    L K  +  ++L+
Sbjct: 121 QDRVLEQVDGVEVSPMLVTGDTENRGTEVHFMADPTIFGT-VEYHYDILAKRMRELSFLN 179

Query: 239 GRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH 298
             V+   +  +   E         F F GG+K +++   + ++ +   +F    EK G  
Sbjct: 180 NGVRIRLTDLRSGKEDD-------FAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGV- 231

Query: 299 RGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAI 355
              VE A+ W +     +  + N I   +GGTH +GLR A+TR I KY    +   K  +
Sbjct: 232 --GVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKV 289

Query: 356 SIISDDLMISAVGILS 371
               DD+      +LS
Sbjct: 290 ETTGDDMREGLSCVLS 305


>gi|29652899|gb|AAO87419.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652922|gb|AAO87430.1| DNA gyrase B [Listeria monocytogenes]
          Length = 201

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 88/197 (44%), Positives = 121/197 (61%), Gaps = 2/197 (1%)

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 7   RKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILN 66

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 67  VEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTL 126

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+K
Sbjct: 127 FYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYK 184

Query: 619 GLGEMLASQLKETAMDA 635
           GLGEM   QL +T M+ 
Sbjct: 185 GLGEMNPEQLWDTTMNP 201


>gi|110612705|gb|ABG78315.1| GyrB [uncultured bacterium]
          Length = 412

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 159/422 (37%), Positives = 236/422 (55%), Gaps = 18/422 (4%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD++TY++SGGLHGVG+SVVNALS  L + + R    + Q++  G+P  PL      
Sbjct: 3   GGKFDDNTYKVSGGLHGVGVSVVNALSSVLKLAIRRNGQTYEQEYHDGVPQQPLSITGPA 62

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
           +   GT++ F P P  F +   F    L K  +  ++L+  V+     ++         E
Sbjct: 63  QG-TGTKVHFWPSPATFNNIH-FSFDTLAKRLRELSFLNSGVRIVLQDERSS-------E 113

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +E F + GGL  ++     +++ ++       + E  G    TVE A+ W +     +  
Sbjct: 114 QEVFQYEGGLSAFVHYLNTHKTALNQVFHFTAQAEDSGI---TVEIAMQWNDGYQEAVYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH  G R ALTR +  Y E      K  +S   +D       I+SV + 
Sbjct: 171 FTNNIPQRDGGTHLQGFRTALTRTLNTYMEREGYLKKEKVSTSGEDAREGLTAIVSVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           +P+F+ QTK KLVS +  + V N + + F+ YL++NP     ++  +I+ +  R   RK 
Sbjct: 231 DPKFSSQTKDKLVSSEVTQAVANLMNEKFEEYLLENPQAGKSIVSKMIDAARAREAARKA 290

Query: 436 R-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           R    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+G
Sbjct: 291 REMTRRKGALDIAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRRMQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIAS 553
           KILNV  A  +K+ ++ ++  L+ ALGC   R +Y  + LRY K+II+TDADVDG+HI +
Sbjct: 351 KILNVEKARFDKMLSSAEVGTLITALGCGIGREEYNPDKLRYHKIIIITDADVDGSHIRT 410

Query: 554 LL 555
           LL
Sbjct: 411 LL 412


>gi|328349711|emb|CBY89163.1| GyrB protein [Flavobacterium sp. R-36669]
          Length = 418

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 165/423 (39%), Positives = 238/423 (56%), Gaps = 15/423 (3%)

Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA-RQNTIFSQKFSR 186
           S LE+++T + AGGKFD  +Y++SGGLHGVG+SVVNALS  L  TV      ++ Q++ R
Sbjct: 1   SALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSKHLRATVHSSDGKVYEQEYER 60

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  L P+++  +    RGT +TF PDP IF     F    L    +  ++L+  +   ++
Sbjct: 61  GKALYPVKQIGETTK-RGTIVTFYPDPIIFTQTVEFAYDTLSARMRELSFLNKGITITFT 119

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +E  +K G    E F+   GLK Y++    NR  I S + +  +EK       VE A+
Sbjct: 120 DKRE-VDKDGNFVSEIFHSDEGLKEYVRYLDANREPIISHVISMNSEK---GEVPVEVAL 175

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLM 363
            +       I +Y N I T EGGTH  G R  LTR +KKYA+ +    K    I  DD  
Sbjct: 176 IYNTSYTENIFAYVNNINTHEGGTHLQGFRTGLTRALKKYADSSGMLDKLKFEIAGDDFR 235

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                I+SV + EP+F GQTKTKL + +    V  A+ +  ++YL +NP +A  +++ VI
Sbjct: 236 EGLTAIISVKVSEPQFEGQTKTKLGNREVVAPVSQAVSEMIENYLEENPNDARIIVQKVI 295

Query: 424 ERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
             ++ R   +K RE+  RKT +    LPGKL+DCS+      E+++VEGDSAGG+AKQ R
Sbjct: 296 LAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPTKCEVYLVEGDSAGGTAKQGR 355

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY-----REEDLRYEK 537
           +R+ QA+LPLRGKILNV  A   K+  N++I ++  ALG    ++          LRY K
Sbjct: 356 DRAFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTIGTEEDSKALNISKLRYHK 415

Query: 538 VII 540
           VII
Sbjct: 416 VII 418


>gi|4996796|dbj|BAA78443.1| subunit B protein of DNA gyrase [bacterium rM4]
          Length = 323

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 104/327 (31%), Positives = 160/327 (48%), Gaps = 31/327 (9%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPN 126
           D   LHHL  EV+DN++DE +AG+ + I V++  +  ++V DNGRGIP          P 
Sbjct: 4   DGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHTDNSISVTDNGRGIPTGVKMDDKHEPK 63

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV R   +   +F+R
Sbjct: 64  RSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKWLRLTVRRDGKVHQIEFAR 123

Query: 187 GIPLSP-----------LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           G   +              K     ++RGT + F PD +IF +   F    L K  +  +
Sbjct: 124 GFVQNRLLETVDGFEVSPMKVTGASDRRGTEVHFLPDTEIFKENHDFHYEILAKRLRELS 183

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V+     ++   E         F   GG+  +++    N+ ++    F     + 
Sbjct: 184 FLNNGVRIRLIDERSGKEDD-------FSGAGGVMGFVKFINANKRVLHPTAFHASGTRP 236

Query: 296 GT-------HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
                        VE A+ W +    ++  + N I   +GGTH +GLR A+TR I KY E
Sbjct: 237 AESYGGIPGTEIGVEVAMQWNDGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIE 296

Query: 348 LTQ--NKRAISIISDDLMISAVGILSV 372
             +   K  + +  DD+      +LSV
Sbjct: 297 QNELAKKAKVEVTGDDMREGLCCVLSV 323


>gi|49065931|gb|AAT49056.1| gyrase B [Capnocytophaga cynodegmi]
          Length = 421

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 165/426 (38%), Positives = 238/426 (55%), Gaps = 18/426 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+S VNALS  L  TV+R+  ++ Q++SRG  L P+++     +KRGT +
Sbjct: 1   YKVSGGLHGVGVSCVNALSVHLTATVSREGKVYQQEYSRGKALYPVKQVGDT-DKRGTTV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
           TF PD +IF     +    L    +  A+L+  +    +  +   EK      E+FY   
Sbjct: 60  TFLPDTEIFQQTTEYKYDTLAARIRELAFLNKGITINLTDLRNKDEKG-NYISEKFYSEN 118

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDE 326
           GL  +++    +R  I   +   + EK G     VE A+ + +   E    Y N I T E
Sbjct: 119 GLTEFVKYLDASRPAIIGRVIAMEGEKAGIP---VEVAMIYNDSFNENLYSYVNNINTSE 175

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--------NKRAISIISDDLMISAVGILSVFIREPE 378
           GGTH  G R+ LTR +K YA+ +          K  I I+ DD       I+SV + EP+
Sbjct: 176 GGTHLQGFRMGLTRTLKSYADKSGILEKASKDKKNPIEIVGDDFREGLTAIISVKVAEPQ 235

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQRE 437
           F GQTKTKL + +    V  A+ D  + YL +NP +A  ++E VI      +  R+ +  
Sbjct: 236 FEGQTKTKLGNREVTAAVSQAVSDMLEAYLEENPNDAKAIVEKVILAAQARQAARKAREM 295

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
           V RKT +    LPGKL+DCS+      ELF+VEGDSAGG+AK  R+++ QA+LPL+GKIL
Sbjct: 296 VQRKTVMSSGGLPGKLSDCSEQDPEKCELFLVEGDSAGGTAKSGRDKNYQAILPLKGKIL 355

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQY---REEDLRYEKVIIMTDADVDGAHIASL 554
           NV      K+ +N++I ++  ALG     +      E LRY KV+IM DADVDG+HI +L
Sbjct: 356 NVEKTNFVKVLDNEEISNIYSALGVYYDPEIKALNLEKLRYHKVVIMCDADVDGSHITTL 415

Query: 555 LLTFFY 560
           +LTFF+
Sbjct: 416 ILTFFF 421


>gi|148971299|gb|ABR20187.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 165/430 (38%), Positives = 239/430 (55%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y+ISGGLHGVG+SVVNALS  L +T+ R       +F  G  +
Sbjct: 1   EVIMTVLHAGGKFDSNSYKISGGLHGVGVSVVNALSTWLKLTIYRDGKRHFMEFREGDAV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL         RGT I F P P  FG    F    L +  +  ++L+  V       + 
Sbjct: 61  APLAVVGDSPK-RGTEIHFLPSPLTFGT-IEFHYDILARRLRELSFLNNGVSIFLKDLRH 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E       E F F GG++ +++     R+++   +F    EK+G    TVE A+ W E
Sbjct: 119 GQE-------ENFSFSGGVRGFVEYLNRTRTVLHPTVFHSVGEKEGI---TVEVAMQWNE 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
                +  + N I   +GGTH + LR A+TR +  + E  +   K  +    D +  S  
Sbjct: 169 SYQENVLCFTNNIPQRDGGTHLTALRAAMTRTLNHFIEENELARKAKVETTGDGMRESLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + +P+F+ QTK KLVS + +  VE  + D    +L++ P EA  ++  +IE + 
Sbjct: 229 CVLSVKVPDPKFSSQTKEKLVSSEVRPAVEEVVSDQMRSFLLEKPAEARIIVGKIIEAAR 288

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK RE   RK A+  L LPGKLADC +      E+++VEGDSAGGSAKQ R+R  
Sbjct: 289 AREAARKARELTRRKGALDGLGLPGKLADCQEKDPAQCEIYLVEGDSAGGSAKQGRDRRF 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q+I+ L+ ALG          E +RY ++I    AD
Sbjct: 349 QAILPLKGKILNVERARFDKLVSSQEIVTLITALGTGIGKDEYSPEKVRYHRIIHHDYAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|29652893|gb|AAO87416.1| DNA gyrase B [Listeria monocytogenes]
          Length = 196

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 88/197 (44%), Positives = 121/197 (61%), Gaps = 2/197 (1%)

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 2   RKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILN 61

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 62  VEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTL 121

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+K
Sbjct: 122 FYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYK 179

Query: 619 GLGEMLASQLKETAMDA 635
           GLGEM   QL +T M+ 
Sbjct: 180 GLGEMNPEQLWDTTMNP 196


>gi|227121273|gb|ACP19328.1| GyrB [Leptospirillum ferriphilum]
          Length = 405

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 156/415 (37%), Positives = 229/415 (55%), Gaps = 13/415 (3%)

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFDN+ Y++SGGLHGVG+SVVNALS+ L + + +   I  Q + +G P +PL 
Sbjct: 1   TVLHAGGKFDNNLYKVSGGLHGVGVSVVNALSETLFLEIHQNGLIHRQTYHKGTPDAPLA 60

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
              +   +RGT I F PD  I      F    L    +  A+L+  +      ++ + E 
Sbjct: 61  VFGETT-QRGTIIRFWPDMTIMET-DQFSFDTLAHRFRELAFLNPVLTIHLKDEETLRE- 117

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE 314
                 E F+F GG+++++    EN+  +   +F  KT + G+ +  V +      EN  
Sbjct: 118 ------ETFHFEGGVQSFVSFLNENKKTLHDVLFFRKTLEDGS-QFEVAFQYQESTENET 170

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFI 374
           +  + N I T EGGTH  G R A+T+ I ++    Q  +   +  +D+     GI+SV I
Sbjct: 171 VLGFANNIHTREGGTHVRGFRTAITKTINRFIREKQLNKGEEVRGEDVREGLTGIISVRI 230

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
             P+F GQTK KL S      +E+ L +       ++P+ A K+ E  +  ++ R   RK
Sbjct: 231 PGPQFEGQTKAKLGSSWVAGAMESFLSEALQEKFEEDPLTAKKIAEKAVLTAQAREAARK 290

Query: 435 QRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            ++   RK  +    LPGKLADC ++    +EL+IVEGDSAGGSAKQ R+R  QA+LPL+
Sbjct: 291 AKDLAKRKNVLEGSNLPGKLADCQESDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLK 350

Query: 494 GKILNVASAG-SEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADV 546
           GKILNV  +   EK   N ++  L+ A+GC    +   E+ LRY K+IIMTDADV
Sbjct: 351 GKILNVEKSRGIEKFITNDEVRALITAVGCGLGEEEFSEKKLRYHKIIIMTDADV 405


>gi|165968982|gb|ABY76047.1| topoisomerase IV subunit ParE [Waddlia chondrophila]
          Length = 478

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 135/504 (26%), Positives = 235/504 (46%), Gaps = 47/504 (9%)

Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187
             +   ++ ++ G K+++  ++ S GL+GVG   VNALS    V   R+      +FS+G
Sbjct: 15  WKVIECVSQINTGAKYNDDVFQFSVGLNGVGTKAVNALSSRFLVRSHREGKFVEAEFSKG 74

Query: 188 IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247
                 +   K + K GT + F PD +IF     FD   ++K   +  YL+  +   ++ 
Sbjct: 75  RLQKDKK--GKTQEKDGTYVEFIPDSEIFKSF-KFDDEYIVKRLWNYVYLNTGLTINYNG 131

Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307
           ++  ++              GL   L  ++    L     +  K          +E+A  
Sbjct: 132 ERIRSDH-------------GLLDLLNQEVSEEGLYEPLHYKSK---------QLEFAFL 169

Query: 308 WCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISA 366
             +       S+ N   T +GGTH S  R  L +G+ +YA     K+  +    D+    
Sbjct: 170 HTQSYGESYFSFVNGQYTSDGGTHLSAFREGLLKGVNEYA-----KK--NFQGVDVREGV 222

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
            G +++ I++P F  QTK KL + + +  +   +++   + L ++P  A K++E +    
Sbjct: 223 FGTVAIRIQDPVFESQTKNKLGNTEIRAPLVQEVKEAVVNLLFKHPSTAKKIIERIAFNE 282

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQN------IAHGTELFIVEGDSAGGSAKQ 480
           + R      ++  ++   +      KL D   +       A  T +F+ EGDSA  S   
Sbjct: 283 KVRKELSAVKKEAKEKQKKISFKIPKLRDSKYHFGDGSKYAEKTMIFLTEGDSASASIVS 342

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +R+   QAV  LRGK LNV     +++  N+++ +++ AL           +LRYEKV++
Sbjct: 343 SRDPLTQAVFSLRGKPLNVFGMKMDQLYKNEEMFNVMSALNIE----EDISNLRYEKVVL 398

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKI 600
            TDADVDG HI +LL+T F      L+   HL+++  PLF++    K++Y +     +K 
Sbjct: 399 ATDADVDGMHIRNLLITLFLTYFEGLVLNGHLYILETPLFKVRNKEKTIYCYS----EKE 454

Query: 601 LEEFKKHGKGKIEISRFKGLGEML 624
            E+  K  K  +EI+RFKGLGE+ 
Sbjct: 455 KEKAVKELKKGVEITRFKGLGEIS 478


>gi|328349761|emb|CBY89188.1| GyrB protein [Flavobacterium sp. R-40832]
          Length = 416

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 161/422 (38%), Positives = 237/422 (56%), Gaps = 11/422 (2%)

Query: 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA-RQ 176
           V  H K    S LE+++T + AGGKFD  +Y++SGGLHGVG+SVVNALS+ L  TV    
Sbjct: 1   VGIHKK-EGVSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSD 59

Query: 177 NTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAY 236
             ++ Q++ +G  L P+++  +    RGT +TF PDP IF     +    L    +  +Y
Sbjct: 60  GKVYEQEYEKGKALYPVKQIGETTK-RGTIVTFYPDPTIFTQTVEYSYDTLSARMRELSY 118

Query: 237 LSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG 296
           L+  +   ++  +E  +K G    E F+   GLK Y++    NR  I + + +   EK  
Sbjct: 119 LNKGITVTFTDKRE-LDKDGNFVSEIFHSDDGLKEYIRYLDGNREPIIAHVISMDHEK-- 175

Query: 297 THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KR 353
                VE A+ +       I SY N I T EGGTH  G R  LTR +KKYA+ +    K 
Sbjct: 176 -GEIPVEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGMLDKL 234

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
              I  DD       I+SV ++EP+F GQTKTKL + +    V  A+ +  ++YL +NP 
Sbjct: 235 KFDISGDDFREGLTAIISVKVQEPQFEGQTKTKLGNREVVSPVSQAVSEMIENYLEENPN 294

Query: 414 EATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
           +A  +++ VI  ++ R   +K RE+  RKT +    LPGKL+DCS+      E+++VEGD
Sbjct: 295 DARIIVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGD 354

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           SAGG+AKQ R+R+ QA+LPLRGKILNV  A   K+  N++I ++  ALG    ++   + 
Sbjct: 355 SAGGTAKQGRDRAFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTVGTEEDSKA 414

Query: 533 LR 534
           L 
Sbjct: 415 LN 416


>gi|328349729|emb|CBY89172.1| GyrB protein [Flavobacterium sp. R-41504]
          Length = 418

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 162/422 (38%), Positives = 235/422 (55%), Gaps = 11/422 (2%)

Query: 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA-RQ 176
           V  H K    S LE+++T + AGGKFD  +Y++SGGLHGVG+SVVNALS+ L  TV    
Sbjct: 1   VGIHKK-EGVSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSD 59

Query: 177 NTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAY 236
             ++ Q++ +G  L P+++  +    RGT +TF PDP IF     +    L    +  +Y
Sbjct: 60  GKVYEQEYEKGKALYPVKQIGETTK-RGTIVTFYPDPSIFTQTIDYSYDTLSARMRELSY 118

Query: 237 LSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG 296
           L+  +   ++  +E  +K G    E F+   GLK Y++    NR  I + + +   EK  
Sbjct: 119 LNKGITITFTDKRE-LDKEGNFVSEIFHSTEGLKEYIRYLDGNREPIIAHVISMDNEK-- 175

Query: 297 THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KR 353
                VE A+ +       I SY N I T EGGTH  G R  LTR +KKYA+ +    K 
Sbjct: 176 -GEIPVEVALIYNTSYSENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGMLDKL 234

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
              I  DD       I+SV + EP+F GQTKTKL + +    V  A+ D  + YL +NP 
Sbjct: 235 KFDISGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVVSPVSQAVGDMIEAYLEENPN 294

Query: 414 EATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
           +A  +++ VI  ++ R   +K RE+  RKT +    LPGKL+DCS+      E+++VEGD
Sbjct: 295 DARIIVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGD 354

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           SAGG+AKQ R+R+ QA+LPLRGKILNV  A   K+  N++I ++  ALG    ++   + 
Sbjct: 355 SAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFENEEIRNIFTALGVTIGTEEDSKA 414

Query: 533 LR 534
           L 
Sbjct: 415 LN 416


>gi|227121275|gb|ACP19329.1| GyrB [Leptospirillum ferriphilum]
          Length = 405

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 155/415 (37%), Positives = 229/415 (55%), Gaps = 13/415 (3%)

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFDN+ Y++SGGLHGVG+SVVNALS+ L + + +   I  Q + +G P +PL 
Sbjct: 1   TVLHAGGKFDNNLYKVSGGLHGVGVSVVNALSETLFLEIHQNGLIHRQTYHKGTPDAPLA 60

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
              +   +RGT I F PD  I      F    L    +  A+L+  +      ++ + E 
Sbjct: 61  VFGETT-QRGTIIRFWPDMTIMET-DQFSFDTLAHRFRELAFLNPVLTIHLKDEETLRE- 117

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE 314
                 E F+F GG+++++    EN+  +   +F  KT + G+ +  V +      EN  
Sbjct: 118 ------ETFHFEGGVQSFVSFLNENKKTLHDVLFFRKTLEDGS-QFEVAFQYQESTENET 170

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFI 374
           +  + N + T EGGTH  G R A+T+ I ++    Q  +   +  +D+     GI+SV I
Sbjct: 171 VLGFANNVHTREGGTHVRGFRTAITKTINRFIREKQLNKGEEVRGEDVREGLTGIISVRI 230

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
             P+F GQTK KL S      +E+ L +       ++P+ A K+ E  +  ++ R   RK
Sbjct: 231 PGPQFEGQTKAKLGSSWVAGAMESFLSEALQEKFEEDPLTAKKIAEKAVLTAQAREAARK 290

Query: 435 QRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            ++   RK  +    LPGKLADC ++    +EL+IVEGDSAGGSAKQ R+R  QA+LPL+
Sbjct: 291 AKDLAKRKNVLEGSNLPGKLADCQESDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLK 350

Query: 494 GKILNVASAG-SEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADV 546
           GKILNV  +   EK   N ++  L+ A+GC    +   E+ LRY K+IIMTDADV
Sbjct: 351 GKILNVEKSRGIEKFITNDEVRALITAVGCGLGEEEFSEKKLRYHKIIIMTDADV 405


>gi|227121269|gb|ACP19326.1| GyrB [Leptospirillum ferriphilum]
          Length = 405

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 155/415 (37%), Positives = 228/415 (54%), Gaps = 13/415 (3%)

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKF+N+ Y++SGGLHGVG+SVVNALS+ L + + +   I  Q + +G P +PL 
Sbjct: 1   TVLHAGGKFNNNLYKVSGGLHGVGVSVVNALSETLFLEIHQNGLIHRQTYHKGTPDAPLA 60

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
              +   +RGT I F PD  I      F    L    +  A+L+  +      ++ + E 
Sbjct: 61  VFGETT-QRGTIIRFWPDMTIMET-DQFSFDTLAHRFRELAFLNPVLTIYLKDEETLRE- 117

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE 314
                 E F+F GG+++++    EN+  +   +F  KT + G+ +  V +      EN  
Sbjct: 118 ------ETFHFEGGVQSFVSFLNENKKTLHDVLFFRKTLEDGS-QFEVAFQYQESTENET 170

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFI 374
           +  + N I T EGGTH  G R A+T+ I ++    Q  +   +   D+     GI+SV I
Sbjct: 171 VLGFANNIHTREGGTHVRGFRTAITKTINRFIREKQLNKGEEVRGKDVREGLTGIISVRI 230

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
             P+F GQTK KL S      +E+ L +       ++P+ A K+ E  +  ++ R   RK
Sbjct: 231 PGPQFEGQTKAKLGSSWVAGAMESFLSEALQEKFEEDPLTAKKIAEKAVLTAQAREAARK 290

Query: 435 QRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            ++   RK  +    LPGKLADC ++    +EL+IVEGDSAGGSAKQ R+R  QA+LPL+
Sbjct: 291 AKDLAKRKNVLEGSNLPGKLADCQESDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLK 350

Query: 494 GKILNVASAG-SEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADV 546
           GKILNV  +   EK   N ++  L+ A+GC    +   E+ LRY K+IIMTDADV
Sbjct: 351 GKILNVEKSRGIEKFITNDEVRALITAVGCGLGEEEFSEKKLRYHKIIIMTDADV 405


>gi|2905606|gb|AAC03528.1| gyrase subunit B [Shewanella oneidensis]
          Length = 417

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 156/422 (36%), Positives = 241/422 (57%), Gaps = 16/422 (3%)

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           II+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L +T+ R   +  Q ++ G+P +
Sbjct: 3   IIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLQLTIRRDGKVHEQFYTHGVPDA 62

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
           P+++        GT I F P  + F D   F    L K  +  ++L+  V      +++ 
Sbjct: 63  PIKEIGDATK-TGTEIRFWPSEQTFSD-VEFHFEILAKRVRKLSFLNSGVGIRLVDERDN 120

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
                  + E F + GG+  +++    N++ ++ ++F    E+      TVE A+ W + 
Sbjct: 121 -------KNEFFKYEGGISAFVEYLNRNKTPVNKDVFHFMQERDD--GITVEVAMQWNDG 171

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVG 368
               I  + N I   +GGTH +G R ALTR +  Y E      K   +   DD       
Sbjct: 172 YQENIFCFTNNIPQRDGGTHLAGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLTA 231

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSE 427
           ++SV + +P+F+ QTK KLVS + +  VE  + +  + YL++NP +A  ++  +++    
Sbjct: 232 VISVKVPDPKFSSQTKDKLVSSEVKAAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARA 291

Query: 428 ERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
               R+ +    RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR NQ
Sbjct: 292 REAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQ 351

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADV 546
           A+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  +  RY  +IIMT+ADV
Sbjct: 352 AILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKNRYHNIIIMTEADV 411

Query: 547 DG 548
           DG
Sbjct: 412 DG 413


>gi|110612641|gb|ABG78283.1| GyrB [uncultured bacterium]
          Length = 405

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 160/412 (38%), Positives = 229/412 (55%), Gaps = 13/412 (3%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD +TY++SGGLHGVGIS VNALS +LHV V +    +  +F+RG     L++    +
Sbjct: 1   GKFDKNTYKVSGGLHGVGISCVNALSKKLHVDVFQSGKHYEMEFARGKVAHLLKEVGSAQ 60

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
           N  GTR+TF P+  IF     FD   LLK  +  A+L+  +K  +  +++   K  +   
Sbjct: 61  N-TGTRVTFWPNETIFSVTV-FDYDILLKRLRELAFLNRGIKIVFRDERDTEHKEQV--- 115

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR-GTVEWAIAWCEEN-PEITSY 318
             F + GGL +++    EN+  + S+       K+G       E A+ W       I SY
Sbjct: 116 --FCYEGGLVSFVSFLNENKEPLFSKPIYMHGVKEGHDGPIDFEVAMQWNNTYSESIYSY 173

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIRE 376
            N I T +GGTH +G   ALTR +  Y +  Q  ++  I    DD+      ++SV +  
Sbjct: 174 VNNISTRQGGTHLTGFSTALTRVLNSYIKNHQLLKSDKISVSGDDMREGLTAVISVKVPN 233

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F GQTK +L + D    V+  + +    +L +NP  A  +++  I  ++ R   RK R
Sbjct: 234 PQFEGQTKQRLGNSDVASVVQQIVGEELAVFLEENPSIAKTIVDKAILAAQARDAARKAR 293

Query: 437 EVN-RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E+  RKTA+   RLPGKL DC +      E++IVEGDSAGGSAK  R+R  QA+LP+RGK
Sbjct: 294 ELTLRKTALDSARLPGKLTDCQEKDPAVCEIYIVEGDSAGGSAKSGRDRRFQAILPIRGK 353

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADV 546
           ILNV  A  EKI  NQ++  ++ A GC   +  +  E LRY K+IIMTDADV
Sbjct: 354 ILNVEKARLEKILQNQEVGAMISAFGCGIGKDNFNIEKLRYHKIIIMTDADV 405


>gi|295979577|dbj|BAJ07461.1| DNA gyrase subunit B [Ralstonia sp. GTF1Y]
          Length = 324

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 111/333 (33%), Positives = 174/333 (52%), Gaps = 35/333 (10%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIP--VENHPKFP-N 126
           D   LHHL  EV+DN++DE +AG+   I V++  +  +++ DNGRGIP  V+   K    
Sbjct: 4   DGTGLHHLVFEVLDNSIDEALAGWCTEITVTIHSDNSISITDNGRGIPPLVKFDDKHEPK 63

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           +S  EI +T LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV R       +F++
Sbjct: 64  RSAAEIAMTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKWLRLTVRRDGQAHLLEFAQ 123

Query: 187 G-----------------IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLK 229
           G                 + +SP++      +KRGT + F  D +IF +   F    L K
Sbjct: 124 GAVQNRLVETVPGPDGVPVEVSPMKVIGPT-DKRGTEVHFLADEEIFTN-VEFHYEILSK 181

Query: 230 MTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFT 289
             +  ++L+  V    +  +         ++E+F F GG+K +++     +S +   IF 
Sbjct: 182 RIRELSFLNNGVHIRLTDQR-------TGKEEDFAFSGGVKGFVEYINRGKSTLHPNIFY 234

Query: 290 GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
             TEK G     VE ++ W +    ++  + N I   +GGTH +GLR A+TR + KY E 
Sbjct: 235 ANTEKDGI---AVEVSMQWNDGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVMNKYIEE 291

Query: 349 TQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
            +   K  +    DD+      +LSV + EP+F
Sbjct: 292 NEIAKKAKVETTGDDMREGLACVLSVKVPEPKF 324


>gi|198042684|gb|ACH81167.1| GyrB [Pseudoalteromonas sp. UST041101-043]
          Length = 408

 Score =  242 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 152/417 (36%), Positives = 238/417 (57%), Gaps = 16/417 (3%)

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L +TV R+  +  Q ++ G+P
Sbjct: 1   AEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKLTVRREGKLHEQFYTMGVP 60

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            +PL          GT + F P  + F +   F    L K  +  ++L+  V    + ++
Sbjct: 61  DAPLAVIGD-SETTGTELRFWPSAETFTN-LDFHYDILAKRLRELSFLNSGVSIILNDER 118

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
           E        + + F + GG++ +++    N++ I   +F    E++     +VE ++ W 
Sbjct: 119 E------ENKSDHFKYEGGIQAFVEYLNRNKTPIHKGVFHFTHERE-EDGISVEVSMQWN 171

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYA----ELTQNKRAISIISDDLMI 364
           +     I  + N I   +GGTH +G R ALTR +  Y        + K   +   DD   
Sbjct: 172 DAYQENIYCFTNNIPQRDGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDARE 231

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
               ++SV + +P+F+ QTK KLVS + +  VE A+ + F  +L++NP +A  ++  +I+
Sbjct: 232 GLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQAMAEKFTEFLLENPTDAKIVVGKIID 291

Query: 425 RS-EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483
            S      R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RN
Sbjct: 292 ASRAREAARKAREMTRRKGAMDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRN 351

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
           R NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  E LRY ++I
Sbjct: 352 RKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPEKLRYHRII 408


>gi|226326916|ref|ZP_03802434.1| hypothetical protein PROPEN_00776 [Proteus penneri ATCC 35198]
 gi|225204753|gb|EEG87107.1| hypothetical protein PROPEN_00776 [Proteus penneri ATCC 35198]
          Length = 153

 Score =  242 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 74/144 (51%), Positives = 107/144 (74%), Gaps = 2/144 (1%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+ YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ + I V
Sbjct: 2   SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGFCDEIIV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHSDNSVSVRDDGRGIPTGIHQE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSDELHVTVARQNTIFSQK 183
           SVVNALS++L +T+ R     S+ 
Sbjct: 121 SVVNALSEKLELTIHRDGKSISKF 144


>gi|269799126|gb|ACZ43841.1| DNA gyrase subunit B [Moritella marina]
          Length = 371

 Score =  242 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 127/382 (33%), Positives = 204/382 (53%), Gaps = 16/382 (4%)

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+   + V +  +G ++V D+GRGIPV+ H +    S  E+ILT LHAGGKFD+++Y++S
Sbjct: 1   GHCTDVVVKIHDDGSVSVSDDGRGIPVDIHEE-EGVSAAEVILTVLHAGGKFDDNSYKVS 59

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS++L +T+ R   I  Q +  G P +P+     +    GT + F P
Sbjct: 60  GGLHGVGVSVVNALSEKLELTIHRHGHIHQQIYRHGEPQAPIAVIGDI-ETTGTELRFWP 118

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++E        + + F + GG+K 
Sbjct: 119 SHETFTNTL-FHYDILAKRLRELSFLNSGVSIKLIDERED------GKSDHFVYEGGIKA 171

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++     N++ I+ + F    E++     TVE A+ W +     I  + N I   +GGTH
Sbjct: 172 FVDYLNVNKTPINKDAFHFSVERED--GITVEVAMQWNDGFQEGIHCFTNNIPQRDGGTH 229

Query: 331 ESGLRVALTRGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
            +G R ALTR +  Y E     +  +  S   DD       ++SV + +P+F+ QTK KL
Sbjct: 230 LAGFRGALTRTLNNYMEKEGFLKKAKTTSASGDDAREGLTAVISVKVPDPKFSSQTKDKL 289

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLRRRKQREVNRKTAIRK 446
           VS + +  VE ++ +    YL++NP EA+ ++  +I+ S      R+ +    RK A+  
Sbjct: 290 VSSEVKSAVEQSMGEKLAEYLLENPKEASTVVMKIIDASRAREAARKAREMTRRKGALDL 349

Query: 447 LRLPGKLADCSQNIAHGTELFI 468
             LPGKLADC +     +EL+I
Sbjct: 350 AGLPGKLADCQEKDPALSELYI 371


>gi|213391516|gb|ACJ46499.1| gyrase B subunit [Pseudoalteromonas sp. BSw20211]
          Length = 423

 Score =  242 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 155/419 (36%), Positives = 243/419 (57%), Gaps = 16/419 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKFD+++Y++SGGLHGVG+SVVNALS++L +T+ R+  ++ Q ++ G+P +PL    
Sbjct: 8   HAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKLTIRREGKLYEQFYTMGVPDAPLAAIG 67

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
                 GT + F P  + F +   F    L K  +  ++L+  V    + ++E       
Sbjct: 68  D-SETTGTELRFWPSAETFTN-LDFHYDILAKRLRELSFLNSGVSIILNDERE------E 119

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
            + + F + GG++ +++    N++ +   +F    E++     +VE ++ W +     I 
Sbjct: 120 NKSDHFKYEGGIRAFVEYLNRNKTPVHKGVFHFTHERE-EDGISVEVSMQWNDAFQENIY 178

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYA----ELTQNKRAISIISDDLMISAVGILSV 372
            + N I   +GGTH +G R ALTR +  Y        + K   +   DD       ++SV
Sbjct: 179 CFTNNIPQRDGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSV 238

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLR 431
            + +P+F+ QTK KLVS + +  VE A+ + F  +L++NP++A  ++  +I+        
Sbjct: 239 KVPDPKFSSQTKDKLVSSEVKSAVEQAMAEKFTEFLLENPMDAKIVVGKIIDAARAREAA 298

Query: 432 RRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LP
Sbjct: 299 RKAREMTRRKGAMDLAGLPGKLADCQEKDPVQSELYIVEGDSAGGSAKQGRNRKNQAILP 358

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGA 549
           L+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  E LRY ++IIMTDADVDGA
Sbjct: 359 LKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPEKLRYHRIIIMTDADVDGA 417


>gi|47216863|emb|CAG11670.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1568

 Score =  242 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 114/599 (19%), Positives = 201/599 (33%), Gaps = 111/599 (18%)

Query: 31  DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE------------------- 71
              A +  S    Y          LE + +RP  YIG  +                    
Sbjct: 5   KDKAASKLSVERVYQKK-----TQLEHILLRPDTYIGSVEPVTQVGPGSTAPRPKTTPFL 59

Query: 72  ------------------------------KALHHLFSEVIDNAMDEVIAG-YANLIEVS 100
                                           L+ +F E++ NA D          I+++
Sbjct: 60  EYSCPIWFFFQQMWVFDEEVGMNQREVTYVPGLYKIFDEILVNAADNKQRDKNMTAIKIT 119

Query: 101 LDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +D     +++ +NG+GIPV  H K        +I   L     +D+   +++GG +G G 
Sbjct: 120 IDPESNTISIWNNGKGIPVVEH-KDEKMYVPALIFGHLLTSSNYDDDEKKVTGGRNGYGA 178

Query: 160 SVVNALSDELHVTVARQNTIFSQK--FSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKI 215
            + N  S +  V  A +    S K  +   +  +   K +       T +TF+PD     
Sbjct: 179 KLCNIFSTKFTVETACKEYRHSFKQTWQNNMTKTSEPKVKLFDGDDFTCVTFQPDLSKFK 238

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
                    A L +     A     VK   +  K                  G ++Y+  
Sbjct: 239 MEKLDKDTMALLTRRAYDVAGSCRGVKVTLNGKKLPV--------------NGFRSYVDL 284

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLR 335
            ++++     E          T     E  +   E+  +  S+ N+I T +GG H   + 
Sbjct: 285 YVKDK---LDETGVALKVVNETVNERWEVCLTLSEKGFQQISFVNSIATTKGGRHIDYVV 341

Query: 336 VALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
             +   + +     +NK  +++    +       ++  I  P F  QTK  +        
Sbjct: 342 DQIVAKLIE-VVKKKNKAGVTVKPFQVKNHIWVFVNALIENPSFDSQTKENMTLQTKSFG 400

Query: 396 VENALRDPFDHYLV-----------------------QNPIEATKLLEWVIERSEERLRR 432
            +  L D F   +                         N      +L WV  +++   + 
Sbjct: 401 SKCPLSDKFIRAVRTPPGRPSSCTRAVKSRCLCHLQATNCGIVESILNWVKFKAQ--TQL 458

Query: 433 RKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAV 489
            K+    + + I+ +       D     +    L + EGDSA   A        R    V
Sbjct: 459 NKKCSSVKHSKIKGIPKLDDANDAGGKHSSECTLILTEGDSAKSLAVSGLGVIGRDRYGV 518

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE----EDLRYEKVIIMTDA 544
            PLRGKILNV  A  ++I  N +I ++++ +G + +  Y +      LRY K++IMTD 
Sbjct: 519 FPLRGKILNVREATHKQIMENAEINNIIKIVGLQYKKSYDDAESLRSLRYGKIMIMTDQ 577



 Score = 44.0 bits (102), Expect = 0.094,   Method: Composition-based stats.
 Identities = 5/38 (13%), Positives = 13/38 (34%), Gaps = 2/38 (5%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
            T+  + V  +     ++  ++          I  +KG
Sbjct: 667 ATKNKQEVAFYSIPEFEEWKKQ--TDNYKSWHIKYYKG 702


>gi|148971309|gb|ABR20192.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  242 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 156/430 (36%), Positives = 235/430 (54%), Gaps = 17/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD   Y++SGGLHGVG+SVVNALS  L         +F Q++ RG PL
Sbjct: 1   EVIMTVLHAGGKFDGGGYKVSGGLHGVGLSVVNALSKSLTAYDRYGGQLFVQQYERGKPL 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            P+       +  G  + F PD  IF +  GF    L    + +A+L+  V         
Sbjct: 61  GPMTAVGP-DDTTGFELVFLPDDTIFEEM-GFQFDTLANRLREQAFLNAGVYLSLVDQ-- 116

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                    +  + + GG+ ++++    NR ++ +       +++   R +V+ AI + +
Sbjct: 117 -----ATGRQVRYQYNGGVVSFVEYLNLNREVLHAHPIAFNAQRE---RVSVDVAIQYND 168

Query: 311 ENPEI--TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISA 366
              +    ++ NTI T EGGTHE+G + ALT+    +A      +    ++  +D+    
Sbjct: 169 TYTDTGLFTFANTIHTAEGGTHEAGFKAALTKVCNDFARKYGLLKEQDSNLSGEDVREGI 228

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             I SV + EP+F GQTKTKL + + +   E  + +    +  + P  A ++LE  I  S
Sbjct: 229 TAICSVKLPEPQFEGQTKTKLGNSEIRGITEAVVSEGLSTFFEETPTVAKRVLEKAISAS 288

Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
             R   RK RE V RK A+    LPGKL DCS      +E+++VEGDSAGGSAKQ RNR+
Sbjct: 289 RAREAARKARELVRRKNALESSTLPGKLTDCSSKDPSESEIYLVEGDSAGGSAKQGRNRA 348

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545
            QA+LPLRGKILNV  A  ++I  N++I  ++ A+G      +  +  RY ++++MTDAD
Sbjct: 349 FQAILPLRGKILNVERARLDRILANEEIRAMITAIGTGIAGDFNLDSARYHRIVLMTDAD 408

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 409 VDGSHIRTLL 418


>gi|29652980|gb|AAO87459.1| DNA gyrase B [Listeria monocytogenes]
          Length = 192

 Score =  242 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 88/193 (45%), Positives = 119/193 (61%), Gaps = 2/193 (1%)

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
            +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A
Sbjct: 2   GLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKA 61

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
             ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ 
Sbjct: 62  RLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRY 121

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
           M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+KGLGE
Sbjct: 122 MRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYKGLGE 179

Query: 623 MLASQLKETAMDA 635
           M   QL +T M+ 
Sbjct: 180 MNPEQLWDTTMNP 192


>gi|269799096|gb|ACZ43826.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 368

 Score =  242 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 126/379 (33%), Positives = 205/379 (54%), Gaps = 16/379 (4%)

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+   I V++  +G ++V D+GRGIPV+ H +    S  E+ILT LHAGGKFD+++Y++S
Sbjct: 1   GHCTDIVVTIHDDGSVSVSDDGRGIPVDIHEE-EGVSAAEVILTVLHAGGKFDDNSYKVS 59

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS++L +T+ R   I +Q +  G+P  P+ +   V +  GT + F P
Sbjct: 60  GGLHGVGVSVVNALSEKLELTIFRHGKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFWP 118

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++E        + + F + GG+K 
Sbjct: 119 SHETFTNTL-FHYDILAKRLRELSFLNSGVSIKLIDERED------GKSDHFVYEGGIKA 171

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++     N++ I+ + F    E++     TVE A+ W +     I  + N I   +GGTH
Sbjct: 172 FVDYLNVNKTPINKDAFHFSVERED--GITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTH 229

Query: 331 ESGLRVALTRGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
            +G R ALTR +  Y E     +  ++ +   DD       ++SV + +P+F+ QTK KL
Sbjct: 230 LAGFRGALTRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKL 289

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRK 446
           VS + +  VE A+ +    YL++NP EA+ ++  +I+        R+ +    RK A+  
Sbjct: 290 VSSEVKSAVEQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKARDMTRRKGALDL 349

Query: 447 LRLPGKLADCSQNIAHGTE 465
             LPGKLADC +     +E
Sbjct: 350 AGLPGKLADCQEKDPALSE 368


>gi|2353016|gb|AAB92593.1| gyrase beta subunit [Shewanella pealeana]
          Length = 419

 Score =  242 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 153/431 (35%), Positives = 234/431 (54%), Gaps = 18/431 (4%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L +T+ R   ++ Q ++ G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSSKLQMTIRRDGKVYEQFYTHGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+    +     GT I F P  + F D   F    L K  +  ++L+  V      +++
Sbjct: 61  APIAPIGEATK-TGTEIRFWPSTETFTDVL-FHFDILAKRVRELSFLNSGVGIRLVDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             +       E F + GG+  ++     N++ ++ E+F    E++     TVE A+ W +
Sbjct: 119 NRD-------EFFKYEGGISAFVDYLNVNKTPVNKEVFHFCQERED--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R ALTR +  Y E      K   +   DD      
Sbjct: 170 GFQENIFCFTNNIPQRDGGTHLAGFRGALTRNLNNYMEREGYNKKGKTAATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS++ +  V+  + +    YL ++P EA  ++  +I+   
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSIEVKSAVDQTMGEQLGDYLKEHPNEAKLIVGKIIDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+     PGKLADC +     +E+ I EGDSAGGSAK  RNR N
Sbjct: 290 AREAARKAREMTRRKGAVDLGGPPGKLADCQEKDPGLSEMNIEEGDSAGGSAKPGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE--KVIIMTDA 544
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC          L     K    TDA
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI-CVVNMTVLHAGGKKEDSTTDA 408

Query: 545 DVDGAHIASLL 555
           DV G+HI +LL
Sbjct: 409 DVGGSHIRTLL 419


>gi|2196798|gb|AAB80816.1| DNA gyrase beta-subunit [Shewanella putrefaciens]
          Length = 419

 Score =  242 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 155/430 (36%), Positives = 238/430 (55%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T L A G ++  +Y++SGGLHGVG+SVVNALS +L +T+ R   ++ Q ++ G+P 
Sbjct: 1   EVIMTVLVALGNYEAHSYKVSGGLHGVGVSVVNALSKKLQMTIRRAGKVYEQFYTHGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+++        GT I F P    F D   F    L K  +  ++L+  V      +++
Sbjct: 61  APIKEIGDATK-TGTEIRFWPFEDTFSD-VEFHFEILAKRVRELSFLNSGVGIRLVDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + E F + GG+  ++     N++ ++ ++F    E++     TVE A+ W +
Sbjct: 119 N-------KNEFFKYEGGISAFVDYLNRNKTPVNKDVFHFMQERED--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                I  + N I   +GGTH  G R ALTR +  Y E      K   S   DD      
Sbjct: 170 GYQENIFCFTNNIPQRDGGTHLVGFRSALTRNLNSYMENEGYNKKGKTSATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +  + YLV+NP +A  ++  ++    
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEKLNDYLVENPADAKLIVGKIVEAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +E++IVEGD AGGSAKQ RNR N
Sbjct: 290 AREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDFAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+  +Q++  L+ ALGC   R +Y  +  RY+ + IMTDA 
Sbjct: 350 QAILPLKGKILNVEKARFDKMLFSQEVATLITALGCGIGRDEYNPDKTRYQNIFIMTDAL 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHILTLL 419


>gi|29652683|gb|AAO87311.1| DNA gyrase B [Listeria monocytogenes]
          Length = 194

 Score =  242 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 88/196 (44%), Positives = 121/196 (61%), Gaps = 2/196 (1%)

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV
Sbjct: 1   KSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNV 60

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
             A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT F
Sbjct: 61  EKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLF 120

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
           Y+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+KG
Sbjct: 121 YRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYKG 178

Query: 620 LGEMLASQLKETAMDA 635
           LGEM   QL +T M+ 
Sbjct: 179 LGEMNPEQLWDTTMNP 194


>gi|33187335|gb|AAP97530.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni]
          Length = 400

 Score =  242 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 164/414 (39%), Positives = 228/414 (55%), Gaps = 18/414 (4%)

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFD  TY++SGGLHGVG+SVVNALS +L  TV R   I+ Q+FS G  +S   
Sbjct: 1   TVLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGQVISEFG 60

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
              K +   GT I F PD +IF     FD   L K  +  AYL+ ++   +  ++     
Sbjct: 61  VIGKSKK-TGTTIEFWPDDQIFEVT-EFDYEILAKRFRELAYLNPKITINFKDNR----- 113

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE 314
             + + E F+F GG+  ++    +  +L  +  F+   E        VE A+ + +   E
Sbjct: 114 --VGKHESFHFEGGISQFVTDLNKKEALTKAIFFSVDEED-----VNVEVALLYNDTYSE 166

Query: 315 IT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
              S+ N I T +GGTHE+G R+ LTR I  Y E      ++   I  DD+    + I+S
Sbjct: 167 NLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGDDVREGLIAIVS 226

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V + EP+F GQTK KL S   +  V  A  +    Y  +NPIEA  ++   +  +  R  
Sbjct: 227 VKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREA 286

Query: 432 RRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +K RE   +K ++    LPGKLADC       +E+++VEGDSAGGSAKQ R RS QA+L
Sbjct: 287 AKKARELTRKKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAIL 346

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
           PLRGKILNV  A  +KI  ++QI +++ A GC     +    LRY K+IIMTDA
Sbjct: 347 PLRGKILNVEKARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDA 400


>gi|227121277|gb|ACP19330.1| GyrB [Leptospirillum ferriphilum]
          Length = 405

 Score =  242 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 155/415 (37%), Positives = 228/415 (54%), Gaps = 13/415 (3%)

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFDN+ Y++SGGLHGVG+S+VNALS+ L + + +   I  Q + +G P +PL 
Sbjct: 1   TVLHAGGKFDNNLYKVSGGLHGVGVSMVNALSETLFLEIHQNGLIHRQTYHKGTPDAPLA 60

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
              +   +RGT I F PD  I      F    L    +  A+L+  +      ++ + E 
Sbjct: 61  VFGETT-QRGTIIRFWPDMTIMET-DQFSFDTLAHRFRELAFLNPVLTIHLKDEETLRE- 117

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE 314
                 E F+F GG+++++    EN+  +   +F  KT + G+ +  V +      EN  
Sbjct: 118 ------ETFHFEGGVQSFVSFLNENKKTLHDVLFFRKTLEDGS-QFEVAFQYQESTENET 170

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFI 374
           +  + N I T EGGTH  G R A+T+ I ++    Q  +   +  +D+     GI+SV I
Sbjct: 171 VLGFANNIHTREGGTHVRGFRTAITKTINRFIREKQLNKGEEVRGEDVREGLTGIISVRI 230

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
             P+F GQTK KL S      +E+ L +       ++P+ A K+ E  +  ++ R   RK
Sbjct: 231 PGPQFEGQTKAKLGSSWVAGAMESFLSEALQEKFEEDPLTAKKIAEKAVLTAQAREAARK 290

Query: 435 QRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            ++   RK  +    LPGKLADC ++    +EL+IVEGDSAGGSAKQ R+R  QA+LPL+
Sbjct: 291 AKDLAKRKNVLEGSNLPGKLADCQESDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLK 350

Query: 494 GKILNVASAG-SEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADV 546
           GKILNV  +   EK   N ++  L+ A+GC    +   E  LRY K+IIMTDADV
Sbjct: 351 GKILNVEKSRGIEKFITNDEVRALITAVGCGLGEEEFSEKELRYHKIIIMTDADV 405


>gi|19568163|gb|AAL91672.1|AF316502_1 putative topoisomerase IV subunit B [Aggregatibacter
           actinomycetemcomitans]
          Length = 294

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 111/307 (36%), Positives = 160/307 (52%), Gaps = 16/307 (5%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + NY A+ I +L+ LEPV++RPGMY   TD    +HL  EVIDN++DE +AG+A  IEV 
Sbjct: 2   TTNYSANEITVLKDLEPVQLRPGMY---TDTTRPNHLAQEVIDNSVDEALAGFATKIEVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  + V+DNGRG+PV+ HP     S +E+I++ LHAGGKF N  Y  SGGLHGVGIS
Sbjct: 59  LHKDQSIEVIDNGRGMPVDIHP-VEKVSGVEVIMSKLHAGGKFSNKNYTFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+ + VTV R + I+   F  G  +  L        +             + D  
Sbjct: 118 VVNALSERVDVTVKRNSEIYKIAFENGKKVEDLTVIGTCGRRTTGTTVHFKPNPKYFDSE 177

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F  +RL  + ++KA L   ++  +  +    E         + +  GL  YL   +   
Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDNVNDTEDT-------WLYQDGLNDYLMEAVNGL 230

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338
             +  + F G+   +   +  V WA+ W  E  E    SY N I T  GGTH +GLR  L
Sbjct: 231 VTLPEQPFIGEFNGE---KEAVSWALLWLPEGGELIGESYVNLIPTALGGTHVNGLRQGL 287

Query: 339 TRGIKKY 345
              ++++
Sbjct: 288 LDAMREF 294


>gi|148971397|gb|ABR20236.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 428

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 165/439 (37%), Positives = 235/439 (53%), Gaps = 25/439 (5%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD   Y+I+GGLHGVG+ VVNALS  L   V +  +++S +FS+GI  
Sbjct: 1   EVIMTVLHAGGKFDKKVYKITGGLHGVGVHVVNALSSRLVAVVKKPESMYSMEFSKGITQ 60

Query: 191 SPLEKKEKVR-----------NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
             + K+               +K GT   F PDP+IF     F    L K  +  A+L+ 
Sbjct: 61  GTIAKRTPDEITGMGIKLNMPDKSGTVTKFWPDPEIFQTL-KFSREILEKRLRELAFLNS 119

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            +    S + +            F+F GGL  ++    E  + + S      +EK G   
Sbjct: 120 NITFILSDESDSYVNS-------FHFDGGLSAFVAYISEGENPLLSSTIHETSEKDGII- 171

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI- 357
             +E+A+ +       I  + N I T EGGTH +G +  L++ +  +A      + I   
Sbjct: 172 --LEYALQYTNSGSEIIEGFVNNIGTPEGGTHLAGFKAGLSKAVLDFARKKDTYKGIDTV 229

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
           I +D+    V I+ V +  P+F GQTK KL + + +  V++ +      +L   P  A K
Sbjct: 230 IGEDIREGIVSIVHVKMMNPQFEGQTKAKLGNSEVKGIVQSMVESTMKLFLESYPAYADK 289

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           +++  +  +E R   R+ RE V RKT +    LPGKL+DCS      +EL+IVEG+SAGG
Sbjct: 290 IVKRAMLAAEAREASRRARELVRRKTTLESGTLPGKLSDCSSTDEEKSELYIVEGNSAGG 349

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           S KQARNR  QAVLPLRGKILNV     +K  +NQ I DL+  LG     +   + LRY 
Sbjct: 350 STKQARNREFQAVLPLRGKILNVEKVSDDKAFSNQIIRDLIAVLGSGIGDEIDLKKLRYG 409

Query: 537 KVIIMTDADVDGAHIASLL 555
           K+IIMTDADVDG+HI +LL
Sbjct: 410 KIIIMTDADVDGSHIRTLL 428


>gi|29652803|gb|AAO87371.1| DNA gyrase B [Listeria monocytogenes]
          Length = 186

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 86/187 (45%), Positives = 116/187 (62%), Gaps = 2/187 (1%)

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I  N+
Sbjct: 2   KLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANE 61

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ M  L++  +
Sbjct: 62  EIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGY 121

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPL++I  G +  Y + +   +  L      G  K  I R+KGLGEM   QL +T
Sbjct: 122 IYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYKGLGEMNPEQLWDT 179

Query: 632 AMDANKR 638
            M+   R
Sbjct: 180 TMNPEHR 186


>gi|4589348|gb|AAD26462.1|AF136390_1 gyrase B subunit [Bacillus thuringiensis]
          Length = 404

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 154/409 (37%), Positives = 230/409 (56%), Gaps = 14/409 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKFD   Y++SGGLHGVG SVVNALS EL V V R+  I  QK+ RGIP++ L+   
Sbjct: 1   HAGGKFDGGGYKVSGGLHGVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
              ++ GT   F+PDP+IF +   +D   L    +  A+L+  +K      +E  +K   
Sbjct: 61  DT-DQTGTITRFKPDPEIFQETTVYDFDTLATRMRELAFLNRNIKLTIEDKREHKQK--- 116

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-T 316
              +EF++ GG+K+Y++    ++  I  E    +  K G     VE ++ + E   +   
Sbjct: 117 ---KEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTDNIY 170

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFI 374
           S+ N I T EGGTHE G + ALTR I  Y       +    ++  +D+      I+S+  
Sbjct: 171 SFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKH 230

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRR 433
             P+F GQTKTKL + +A+   E+   + F+ +L++NP  A K++E   +        ++
Sbjct: 231 PNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKK 290

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            +    RK+A+    LPGKLADCS      +E++IVEGDSAGGSA+Q R+R  QA+LPL+
Sbjct: 291 ARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSARQGRDRHFQAILPLK 350

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           GKI+NV  A  +KI +N ++  ++ A+G      +  E  RY KVIIMT
Sbjct: 351 GKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKARYHKVIIMT 399


>gi|110612713|gb|ABG78319.1| GyrB [uncultured bacterium]
 gi|110612715|gb|ABG78320.1| GyrB [uncultured bacterium]
          Length = 409

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 157/421 (37%), Positives = 234/421 (55%), Gaps = 18/421 (4%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD++TY++SGGLHGVG+SVVNALS  L + + R    + Q++  G+P  PL      +
Sbjct: 1   GKFDDNTYKVSGGLHGVGVSVVNALSSVLKLAIRRNGQTYEQEYHDGVPQQPLSITGPAQ 60

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
              GT++ F P P  F +   F    L K  +  ++L+  V+     ++         E+
Sbjct: 61  G-TGTKVHFWPSPATFNNIH-FSFDTLAKRLRELSFLNSGVRIVLQDERSS-------EQ 111

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
           E F + GGL  ++     +++ ++       + E  G    TVE A+ W +     +  +
Sbjct: 112 EVFQYEGGLSAFVHYLNTHKTALNQVFHFTAQAEDSGI---TVEIAMQWNDGYQEAVYCF 168

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH  G R ALTR +  Y E      K  +S   +D       I+SV + +
Sbjct: 169 TNNIPQRDGGTHLQGFRTALTRTLNTYMEREGYLKKEKVSTSGEDAREGLTAIVSVKVPD 228

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F+ QTK KLVS +  + V N + + F+ YL++NP     ++  +I+ +  R   RK R
Sbjct: 229 PKFSSQTKDKLVSSEVTQAVANLMNEKFEEYLLENPQAGKSIVSKMIDAARAREAARKAR 288

Query: 437 -EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
               RK A+    LPGK ADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GK
Sbjct: 289 EMTRRKGALDIAGLPGKFADCQERDPALSELYLVEGDSAGGSAKQGRNRRMQAILPLKGK 348

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           ILNV  A  +K+ ++ ++  L+ ALGC   R +Y  + LRY K+II+TDADVDG+HI +L
Sbjct: 349 ILNVEKARFDKMLSSAEVGTLITALGCGIGREEYNPDKLRYHKIIIITDADVDGSHIRTL 408

Query: 555 L 555
           L
Sbjct: 409 L 409


>gi|29652807|gb|AAO87373.1| DNA gyrase B [Listeria monocytogenes]
          Length = 190

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 88/192 (45%), Positives = 119/192 (61%), Gaps = 2/192 (1%)

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A 
Sbjct: 1   LEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKAR 60

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ M
Sbjct: 61  LDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYM 120

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
             L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+KGLGEM
Sbjct: 121 RPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYKGLGEM 178

Query: 624 LASQLKETAMDA 635
              QL +T M+ 
Sbjct: 179 NPEQLWDTTMNP 190


>gi|19909685|dbj|BAB87038.1| DNA gyrase subunit B [Burkholderia cepacia]
          Length = 303

 Score =  241 bits (614), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 108/315 (34%), Positives = 160/315 (50%), Gaps = 30/315 (9%)

Query: 73  ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE--NHPKFP-NKST 129
            LHHL  EV+DN++DE +AGY N I V++  +  ++V DNGRGIP +   + K    +S 
Sbjct: 1   GLHHLVFEVLDNSIDEALAGYCNDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSA 60

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            EI++T LHAGGKFD ++Y++SGGLHGVG+S VNALS  L +TV R       +F RGI 
Sbjct: 61  AEIVMTELHAGGKFDQNSYKVSGGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGIA 120

Query: 190 ------------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
                       +SP+       N RGT + F  DP IFG    +    L K  +  ++L
Sbjct: 121 QDRVLEKVDGVEVSPMLVTGDTEN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFL 178

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V+   +  +   E         F F GG+K +++   + ++ +   +F    EK G 
Sbjct: 179 NNGVRIRLTDLRSGKEDD-------FAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGV 231

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               VE A+ W +     +  + N I   +GGTH +GLR A+TR I KY    +   K  
Sbjct: 232 ---GVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAK 288

Query: 355 ISIISDDLMISAVGI 369
           +    DD+      +
Sbjct: 289 VETTGDDMREGLSCV 303


>gi|110612669|gb|ABG78297.1| GyrB [uncultured bacterium]
          Length = 410

 Score =  241 bits (614), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 152/420 (36%), Positives = 235/420 (55%), Gaps = 15/420 (3%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD ++Y++SGGLHGVGISVVNALS +L +++ R+   + Q+++ G P++P+      R
Sbjct: 1   GKFDENSYKVSGGLHGVGISVVNALSKKLTLSIKREGQRWEQEYATGDPVAPIAPTGNCR 60

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
              GT I F PDP++F     F  +RL    +  A+L+  +K     ++E  ++      
Sbjct: 61  G-TGTTIIFWPDPEVFEST-EFSFSRLQNRFKELAFLNDNLKITLKDEREGRKREAT--- 115

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
             +++ GG+  ++    + R  I   I   + E+ G     V+ AI W +     +  + 
Sbjct: 116 --YHYEGGVAAFVADINKGREAIHPTIIRVRGERDGI---VVDAAIQWNDGYAESVYPFT 170

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREP 377
           N I   +G TH +G R A+TR +  Y +      K  I+  S D+      ILSV + +P
Sbjct: 171 NNIPQADGDTHLTGFRSAMTRAMSAYLDREGIAAKNKITADSSDMREGLAAILSVKVPDP 230

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR- 436
           +F+ QTK KLVS + +  VE  + +    +L ++P EA  +   ++E +  R   RK R 
Sbjct: 231 KFSSQTKDKLVSSEVRPVVEGIIAEALTTFLDEHPKEAQAIAAKIVEAARAREAARKARE 290

Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              RK+A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R  QA+LPL+GKI
Sbjct: 291 TTRRKSAMDIANLPGKLADCQEKDPSLCEIYLVEGDSAGGSAKQGRDRKFQAILPLKGKI 350

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLL 555
           LNV  A  ++I  +++I  ++ ALG            LRY ++I+MTDADVDG+HI +LL
Sbjct: 351 LNVERARFDRILESEEIGTMITALGTGIGPDEFNAAKLRYHRIILMTDADVDGSHIRTLL 410


>gi|148971371|gb|ABR20223.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 420

 Score =  241 bits (614), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 155/430 (36%), Positives = 241/430 (56%), Gaps = 15/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD++ Y++SGGLHGVG+SVVNALS+ L + V RQ  +  Q++  G PL
Sbjct: 1   EVIMTVLHAGGKFDDNAYKVSGGLHGVGVSVVNALSEHLWLEVHRQGRMHRQEYRMGEPL 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
             + +  +   +RGT + F P  ++F     F    L K  +  A+L+  ++   +  + 
Sbjct: 61  FAM-RDVEASVRRGTTVRFLPSTEVF-AITEFHYDILAKRLRELAFLNSGLRIELADLRP 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E+      + F + GG+  ++Q  +E ++ +  ++ +      G     VE A+ W +
Sbjct: 119 GQERE-----DVFAYEGGICAFVQHLVELKTPLHPKVISLNYRADGI---EVEVALQWTD 170

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAV 367
                +  Y N I   +GGTH +G R ALTR + +Y E     +   +     D+    +
Sbjct: 171 GYQEGVYCYTNNIPQRDGGTHLTGFRAALTRTLTQYIERANLAKNAKVQLSGGDMREGLI 230

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            +LSV + +P+F+ QTK KLVS + +  VE  +    + +L++NP EA  +   V++   
Sbjct: 231 AVLSVKVPDPKFSSQTKEKLVSSEVKTVVEQGVGQTLEEFLLENPGEARTIAGKVVDAAR 290

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLA C +     +ELF+VEG SAGGSAKQ RNR N
Sbjct: 291 AREAARKAREMTRRKGALDIAGLPGKLAACQEKDPALSELFLVEGHSAGGSAKQGRNRKN 350

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QAVLPL+GKILNVA A   ++  + ++  L+ ALGC   + +Y  + +RY ++IIMTDA 
Sbjct: 351 QAVLPLKGKILNVAKARFHRMLASAEVGTLITALGCGIGKEEYTPDKIRYHRIIIMTDAT 410

Query: 546 VDGAHIASLL 555
             G+HI +LL
Sbjct: 411 STGSHIRTLL 420


>gi|267850654|gb|ACY82402.1| DNA gyrase subunit B [Paenibacillus sp. YC64]
          Length = 401

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 160/412 (38%), Positives = 229/412 (55%), Gaps = 15/412 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKF    Y++SGGLHGVG+SVVNALS+ + V V R+  I+ Q++ +G P   ++   
Sbjct: 1   HAGGKFGGEGYKVSGGLHGVGVSVVNALSELVIVQVKREGHIYQQEYRKGAPQYDIKIIG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
                 GT++TF PD +IF +   +D   L    +  A+L+  ++   S ++        
Sbjct: 61  DTTE-TGTQVTFTPDSEIFTETTVYDYETLQSRIRELAFLNKGIEIVLSDER-------T 112

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
                F + GG+  +++    NR  +  +    +  K   H   VE A+ + +     I 
Sbjct: 113 GVSNSFKYEGGIIEFVKYLNRNREALHEQPIYVEGAKDHIH---VEVALQYNDSYTENIY 169

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFI 374
           S+ N I T EGGTHESG + ALTR I  YA  T   +    +   DD+      I+SV I
Sbjct: 170 SFANNINTHEGGTHESGFKSALTRIINDYARKTNLIKDNDSNFSGDDVREGLTAIISVKI 229

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP+F GQTKTKL + + +  VE+   +    +L +NP  + K++E  ++ +  R   RK
Sbjct: 230 PEPQFEGQTKTKLGNSEVRGIVESFFAEKLQEFLEENPSVSRKIVEKGLQAARAREAARK 289

Query: 435 QRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            RE   RK+A+    LPGKLADCS   A  +EL+IVEGDSAGGSAKQ R+R  QA+LPLR
Sbjct: 290 ARELTRRKSALEVGSLPGKLADCSSKDASISELYIVEGDSAGGSAKQGRDRHFQAILPLR 349

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545
           GKILNV  A  ++I  N +I  ++ ALG     ++     RY K+IIMTDAD
Sbjct: 350 GKILNVEKARLDRILGNAEIRAIITALGTGISDEFDLSKARYHKIIIMTDAD 401


>gi|88824765|gb|ABD52428.1| gyrase B [Mycobacterium avium]
          Length = 432

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 148/438 (33%), Positives = 225/438 (51%), Gaps = 35/438 (7%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
            +NS Y +SGGLHGVG+SVVNALS  L V +AR    +SQ +   +P +   K+ +   +
Sbjct: 1   GENSGYNVSGGLHGVGVSVVNALSTRLEVNIARDGYEWSQYYDHAVPGTL--KQGEATKR 58

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-------- 254
            GT I F  DP IF     +D   + +  Q  A+L+  +    + ++   E+        
Sbjct: 59  TGTTIRFWADPDIFETT-EYDFETVARRLQEMAFLNKGLTINLTDERVTNEEVVDEVVSD 117

Query: 255 -----------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                                +   F++PGGL  +++     ++ I   I     +  G 
Sbjct: 118 TADAPKSAQEKAAESAAPHKVKHRTFHYPGGLVDFVKHINRTKNPIHQSIIDFGGKGPGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRA 354
               VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +     + 
Sbjct: 178 ---EVEIAMQWNGGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
            ++  DD+      ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP +
Sbjct: 235 PNLTGDDIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPAD 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDS
Sbjct: 295 AKVIVNKAVSSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    L
Sbjct: 355 AGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDITKL 414

Query: 534 RYEKVIIMTDADVDGAHI 551
           RY K+++MTDADVDG+HI
Sbjct: 415 RYHKIVLMTDADVDGSHI 432


>gi|110612707|gb|ABG78316.1| GyrB [uncultured bacterium]
          Length = 409

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 158/421 (37%), Positives = 235/421 (55%), Gaps = 18/421 (4%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD++TY++SGGLHGVG+SVVNALS  L + + R    + Q++  G+P  PL      +
Sbjct: 1   GKFDDNTYKVSGGLHGVGVSVVNALSSVLKLAIRRNGQTYEQEYHDGVPQQPLSITGPAQ 60

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
              GT++ F P P  F +   F    L K  +  ++L+  V+     ++         E+
Sbjct: 61  G-TGTKVHFWPSPATFNNIH-FSFDTLAKRLRELSFLNSGVRIVLQDERSS-------EQ 111

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
           E F + GGL  ++     +++ ++       + E  G    TVE A+ W +     +  +
Sbjct: 112 EVFQYEGGLSAFVHYLNTHKTALNQVFHFTAQAEDSGI---TVEIAMQWNDGYQEAVYCF 168

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH  G R ALTR +  Y E      K  +S   +D       I+SV + +
Sbjct: 169 TNNIPQRDGGTHLQGFRTALTRTLNTYMEREGYLKKEKVSTSGEDAREGLTAIVSVKVPD 228

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F+ QTK KLVS +  + V N + + F+ YL++NP     ++  +I+ +  R   RK R
Sbjct: 229 PKFSSQTKDKLVSSEVTQAVANLMNEKFEEYLLENPQAGKSIVSKMIDAARAREAARKAR 288

Query: 437 -EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
               RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GK
Sbjct: 289 EMTRRKGALDIAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRRMQAILPLKGK 348

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           ILNV  A  +K+ ++ ++  L+ ALGC   R +Y  + LRY K+II+TDADVDG+HI +L
Sbjct: 349 ILNVEKARFDKMLSSAEVGTLITALGCGIGREEYNPDKLRYHKIIIITDADVDGSHIRTL 408

Query: 555 L 555
           L
Sbjct: 409 L 409


>gi|161085586|dbj|BAF93880.1| DNA gyrase B [Sporosarcina sp. YM9-109]
          Length = 391

 Score =  240 bits (613), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 143/400 (35%), Positives = 216/400 (54%), Gaps = 13/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS+E  V V R   +   KF RGI    LE   +  ++ G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSEETEVYVRRDGKVHFIKFERGILSHELEVIGET-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           TR  F+ DP+IF +   ++   L    +  AYL+  ++   + ++E          + FY
Sbjct: 60  TRTRFKADPEIFTETTVYEYEILAHRLRELAYLNRGLRISITDEREE-----ENRTDTFY 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K+Y++   +N+  I       + EK G    ++E A+ +       + S+ N I 
Sbjct: 115 YEGGIKSYVEHLNKNKEPIHEVPIFIEGEKDGI---SIEIAMQYNSGYAENLFSFANNIN 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHESG + ALTR +  YA      +    ++  DD+      I+S+   +P+F G
Sbjct: 172 TYEGGTHESGFKTALTRVVNDYARKNGMLKEADPNLSGDDVREGLTAIISIKHPDPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + +          + F  +L++NP+ A  +++  +  +  R+  +  RE   R
Sbjct: 232 QTKTKLGNSEVSTITNALFSEGFQRFLLENPVTARMVIDKSLMAARARIAAKNARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS      +EL+IVEGDSAGGSAK  R+R  QA+LPLRGKILNV 
Sbjct: 292 KSALEVSSLPGKLADCSSRNPAISELYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  ++I  N +I  ++ ALG     ++     RY K++I
Sbjct: 352 KARLDRILGNAEIRMMITALGTGIGDEFDLSKARYHKIVI 391


>gi|213391514|gb|ACJ46498.1| gyrase B subunit [Pseudoalteromonas sp. BSw10014]
          Length = 423

 Score =  240 bits (613), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 157/419 (37%), Positives = 242/419 (57%), Gaps = 16/419 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKFD+++Y++SGGLHGVG+SVVNALS++L +T+ R+  +  Q ++ G+P +PL    
Sbjct: 8   HAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKLTIRREGKLHEQFYTMGVPDAPLAVIG 67

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
                 GT I F P  + F +   F    L K  +  ++L+  V    S ++E       
Sbjct: 68  D-SETNGTEIRFWPSGETFTN-LDFHYDILAKRLRELSFLNSGVSIILSDERE------E 119

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
            + + F + GG++ +++    N++ +   +F    E++     +VE ++ W +     I 
Sbjct: 120 NKSDHFKYEGGIRAFVEYLNRNKTPVHKGVFHFTHERE-EDGISVEVSMQWNDAFQENIY 178

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYA----ELTQNKRAISIISDDLMISAVGILSV 372
            + N I   +GGTH +G R ALTR +  Y        + K   +   DD       ++SV
Sbjct: 179 CFTNNIPQRDGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSV 238

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLR 431
            + +P+F+ QTK KLVS + +  VE A+ + F  +L++NP++A  ++  +I+        
Sbjct: 239 KVPDPKFSSQTKDKLVSSEVKSAVEQAMAEKFTEFLLENPLDAKIVVGKIIDAARAREAA 298

Query: 432 RRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LP
Sbjct: 299 RKAREMTRRKGAMDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILP 358

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGA 549
           L+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  E LRY ++IIMTDADVDGA
Sbjct: 359 LKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPEKLRYHRIIIMTDADVDGA 417


>gi|328349765|emb|CBY89190.1| GyrB protein [Flavobacterium sp. R-36963]
          Length = 414

 Score =  240 bits (613), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 160/410 (39%), Positives = 233/410 (56%), Gaps = 11/410 (2%)

Query: 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA-RQ 176
           V  H K    S LE+++T + AGGKFD  +Y++SGGLHGVG+SVVNALS+ L  TV    
Sbjct: 1   VGIHKK-EGVSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSD 59

Query: 177 NTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAY 236
             ++ Q++ +G  L P+++  +    RGT +TF PDP IF     +    L    +  +Y
Sbjct: 60  GKVYEQEYEKGKALYPVKQIGETTK-RGTIVTFYPDPTIFTQTVEYSYDTLSARMRELSY 118

Query: 237 LSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG 296
           L+  +   ++  +E  +K G    E F+   GLK Y++    NR  I + + +   EK  
Sbjct: 119 LNKGITVTFTDKRE-LDKDGNFVSEIFHSDEGLKEYIRYLDGNREPIIAHVISMDHEK-- 175

Query: 297 THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KR 353
                VE A+ +       I SY N I T EGGTH  G R  LTR +KKYA+ +    K 
Sbjct: 176 -GEIPVEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGMLDKL 234

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
              I  DD       I+SV ++EP+F GQTKTKL + +    V  A+ +  ++YL +NP 
Sbjct: 235 KFDISGDDFREGLTAIISVKVQEPQFEGQTKTKLGNREVVSPVSQAVSEMIENYLEENPN 294

Query: 414 EATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
           +A  +++ VI  ++ R   +K RE+  RKT +    LPGKL+DCS+      E+++VEGD
Sbjct: 295 DARIIVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGD 354

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           SAGG+AKQ R+R+ QA+LPLRGKILNV  A   K+  N++I ++  ALG 
Sbjct: 355 SAGGTAKQGRDRAFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGV 404


>gi|307939298|gb|ADN95840.1| DNA gyrase B [Hymenobacter antarcticus]
          Length = 436

 Score =  240 bits (613), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 168/440 (38%), Positives = 248/440 (56%), Gaps = 27/440 (6%)

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           +T LHAGGKFD  +Y++SGGLHGVG+S VNALS +L VTV R    + Q++  GIP   +
Sbjct: 1   MTVLHAGGKFDKGSYKVSGGLHGVGVSCVNALSTDLKVTVRRNGHKYEQEYKIGIPQYDV 60

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           ++   +  + GT + F PD  IF +   +    +    +  +YL+  ++   +  +E  E
Sbjct: 61  KEVG-LSEEHGTEVQFLPDASIFTE-TEYRYDTVAGRLRDLSYLNKGIRITLTDRREKLE 118

Query: 254 KYGIPEKEEFYFPGGLKTYLQT-KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
             G+   EEFY  GGL+ ++Q    E R  + SE    ++EK GT    VE A+ +    
Sbjct: 119 -GGVFRGEEFYSTGGLRDFVQYLDGEQRPSLLSEPIYVESEKGGTP---VEVALQYNTSY 174

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGI 369
              + SY N I T EGGTH +G R A+TR +K Y +  +   K  + I  DD       +
Sbjct: 175 QENVYSYVNNINTIEGGTHVAGFRSAVTRVLKTYGDKNKLFEKAKVEITGDDFREGLTAV 234

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           +SV ++EP+F GQTKTKL + +    V + + +    YL +NP +A +++E VI  ++ R
Sbjct: 235 ISVKVQEPQFEGQTKTKLGNSEVSGAVNSVVGEILTQYLDENPNQANRIMEKVILAAKAR 294

Query: 430 LRRRKQREVNRKTAIRKLRL-PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
           +  RK +++ ++  +      PGKLADCS++     EL++VEGDSAGG+AKQ RNR+ QA
Sbjct: 295 IAARKAKDMVQRKGVLSSNSLPGKLADCSESDPEICELYLVEGDSAGGTAKQGRNRAFQA 354

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY----------------REED 532
           +LPLRGKILNV  A   +I  N++I +++ ALG     +                     
Sbjct: 355 ILPLRGKILNVEKAQEHRILENEEIKNMITALGVTFNERKSLAFTTDDDGTESGPLNFSK 414

Query: 533 LRYEKVIIMTDADVDGAHIA 552
           LRY KVIIMTDADV G+HI 
Sbjct: 415 LRYHKVIIMTDADVXGSHIR 434


>gi|284800187|ref|ZP_06390591.1| DNA gyrase subunit B [Neisseria subflava NJ9703]
 gi|284795800|gb|EFC51147.1| DNA gyrase subunit B [Neisseria subflava NJ9703]
          Length = 565

 Score =  240 bits (613), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 140/410 (34%), Positives = 215/410 (52%), Gaps = 29/410 (7%)

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
               ++ +  +IF    EK G    +VE A+ W +     +  + N I   +GGTH + L
Sbjct: 1   MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 57

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R  +TR I  Y E  +   K  +    DD+      +LSV + +P+F+ QTK KLVS + 
Sbjct: 58  RQVMTRTINNYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEI 117

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
              V   +      +L +NP EA  +   +++ +  R   RK RE+ R+   +  L LPG
Sbjct: 118 GSVVNEVINQALTDFLEENPTEAKIITSKIVDAARAREAARKAREITRRKGVMDGLGLPG 177

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSA Q R+R  QA+LPL+GKILNV  A  EK+  +Q
Sbjct: 178 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 237

Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALG     +    E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ 
Sbjct: 238 EVATLITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 297

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI----EISRFKGLGE---M 623
           ++++  PPL++   G +  Y  DE  K + L          +     I      GE    
Sbjct: 298 YIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVSDGRTIE-----GEELAN 352

Query: 624 LASQ--LKETAMDANKRTLLRVEINK-------DLNSLKDTQDSINKLMG 664
            A Q  L +T ++   R +  + ++        DL++ +    ++ +L G
Sbjct: 353 TAKQFLLAKTVIEQESRIIDELVLHAMLHASPVDLSTAESADRAVAELSG 402



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%)

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           ++ +G      +D +  +  L+      +  + I R+KGLGEM   QL ET MD   R L
Sbjct: 467 KLYKGDNE---YDIDSFEGALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPTVRRL 523

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           L+V I   +       +    LMG + + R  FI+  A    ++  
Sbjct: 524 LKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALLAQNIDA 565


>gi|4996814|dbj|BAA78452.1| subunit B protein of DNA gyrase [bacterium rM14]
          Length = 321

 Score =  240 bits (613), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 107/327 (32%), Positives = 158/327 (48%), Gaps = 31/327 (9%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPN 126
           D   LHHL  EV+DN++DE +AGY + I V++  +G L+V DNGRGIP          P 
Sbjct: 2   DGTGLHHLVFEVVDNSIDEALAGYCDDIAVTIHADGSLSVTDNGRGIPTGVKMDDKHEPK 61

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV R   +   +F+R
Sbjct: 62  RSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKWLRLTVRRDGQVHQIEFAR 121

Query: 187 GIPL-----------SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           G              +   K       RGT + F PD +IFGD   F    L K  +  +
Sbjct: 122 GAAQNRQIEVVDGFETSPMKVTGTTEDRGTSVRFLPDVEIFGDNHDFHYETLAKRLRELS 181

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V+     ++   E         F   GG+  +++     + ++    F     + 
Sbjct: 182 FLNNGVRIRLIDERTGKEDD-------FSGAGGVLGFVKFISTGKKVLHPTPFYASGSRP 234

Query: 296 GT-------HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
                        VE A+ W +    ++  + N I   +GGTH +GLR A+TR I KY  
Sbjct: 235 AETYGGIPGTEIGVEVAMQWNDGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIA 294

Query: 348 LTQ--NKRAISIISDDLMISAVGILSV 372
             +   K  + +  DD+      +LSV
Sbjct: 295 DNELAKKAKVEVTGDDMREGLCCVLSV 321


>gi|29652940|gb|AAO87439.1| DNA gyrase B [Listeria monocytogenes]
          Length = 205

 Score =  240 bits (613), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 89/204 (43%), Positives = 124/204 (60%), Gaps = 2/204 (0%)

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +R +    + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+L
Sbjct: 4   AKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAIL 63

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           P+RGKILNV  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAH
Sbjct: 64  PIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAH 123

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           I +LLLT FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  
Sbjct: 124 IRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDT 181

Query: 611 KIEISRFKGLGEMLASQLKETAMD 634
           K  I R+KGLGEM   QL +T M+
Sbjct: 182 KYSIQRYKGLGEMNPEQLWDTTMN 205


>gi|302024209|ref|ZP_07249420.1| DNA gyrase [Streptococcus suis 05HAS68]
          Length = 219

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 99/223 (44%), Positives = 133/223 (59%), Gaps = 10/223 (4%)

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADCS N A  TELFIVEGDSAGGSAK  R+R  QA+LP+RGKILNV  A  +K
Sbjct: 1   SNLPGKLADCSSNDATKTELFIVEGDSAGGSAKSGRDREFQAILPIRGKILNVEKASMDK 60

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           I  N++I  L  A+G    + +     RY+K++IMTDADVDGAHI +LLLT FY+ M  +
Sbjct: 61  ILANEEIRSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLFYRYMRPV 120

Query: 567 IEQKHLFLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLG 621
           +E  ++++  PP++ I  G++   Y       E+  Q  LE     G+ K  I R+KGLG
Sbjct: 121 VEAGYVYIAQPPIYGIKVGSEIKEYIQPGVNQEQELQDALER-HSTGRSKPTIQRYKGLG 179

Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMG 664
           EM   QL ET M+   R + RV ++       +     + + G
Sbjct: 180 EMDDHQLWETTMNPENRLMARVSVDD----AAEADKIFDMING 218


>gi|328349727|emb|CBY89171.1| GyrB protein [Flavobacterium sp. R-38503]
          Length = 414

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 161/412 (39%), Positives = 231/412 (56%), Gaps = 11/412 (2%)

Query: 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA-RQ 176
           V  H K    S LE+++T + AGGKFD  +Y++SGGLHGVG+SVVNALS+ L  TV    
Sbjct: 1   VGIHKK-EGVSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSD 59

Query: 177 NTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAY 236
             ++ Q++ +G  L P+++  +    RGT +TF PDP IF     +    L    +  +Y
Sbjct: 60  GKVYEQEYEKGKALYPVKQIGETTK-RGTIVTFYPDPSIFTQTIDYSYDTLSARMRELSY 118

Query: 237 LSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG 296
           L+  +   ++  +E  +K G    E F+   GLK Y++    NR  I + + +   EK  
Sbjct: 119 LNKGITITFTDKRE-LDKEGNFVSEIFHSTEGLKEYIRYLDGNREPIIAHVISMDNEK-- 175

Query: 297 THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KR 353
                VE A+ +       I SY N I T EGGTH  G R  LTR +KKYA+ +    K 
Sbjct: 176 -GEIPVEVALIYNTSYSENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGMLDKL 234

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
              I  DD       I+SV + EP+F GQTKTKL + +    V  A+ D  + YL +NP 
Sbjct: 235 KFDISGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVVSPVSQAVGDMIEAYLEENPN 294

Query: 414 EATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
           +A  +++ VI  ++ R   +K RE+  RKT +    LPGKL+DCS+      E+++VEGD
Sbjct: 295 DARIIVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGD 354

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           SAGG+AKQ R+R+ QA+LPLRGKILNV  A   K+  N++I ++  ALG   
Sbjct: 355 SAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFENEEIRNIFTALGVTI 406


>gi|4996780|dbj|BAA78435.1| subunit B protein of DNA gyrase [bacterium rJ9]
 gi|4996822|dbj|BAA78456.1| subunit B protein of DNA gyrase [bacterium rA2]
          Length = 323

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 107/327 (32%), Positives = 158/327 (48%), Gaps = 31/327 (9%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPN 126
           D   LHHL  EV+DN++DE +AGY + I V++  +G L+V DNGRGIP          P 
Sbjct: 4   DGTGLHHLVFEVVDNSIDEALAGYCDDIAVTIHADGSLSVTDNGRGIPTGVKMDDKHEPK 63

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV R   +   +F+R
Sbjct: 64  RSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKWLRLTVRRDGQVHQIEFAR 123

Query: 187 GIPL-----------SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           G              +   K       RGT + F PD +IFGD   F    L K  +  +
Sbjct: 124 GAAQNRQIEVVDGFETSPMKVTGTTEDRGTSVRFLPDVEIFGDNHDFHYETLAKRLRELS 183

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V+     ++   E         F   GG+  +++     + ++    F     + 
Sbjct: 184 FLNNGVRIRLIDERTGKEDD-------FSGAGGVLGFVKFISTGKKVLHPTPFYASGSRP 236

Query: 296 GT-------HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
                        VE A+ W +    ++  + N I   +GGTH +GLR A+TR I KY  
Sbjct: 237 AETYGGIPGTEIGVEVAMQWNDGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIA 296

Query: 348 LTQ--NKRAISIISDDLMISAVGILSV 372
             +   K  + +  DD+      +LSV
Sbjct: 297 DNELAKKAKVEVTGDDMREGLCCVLSV 323


>gi|42541283|gb|AAS19521.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|86651909|gb|ABD14442.1| DNA gyrase beta subunit [Photobacterium leiognathi]
 gi|110264881|gb|ABG57016.1| DNA gyrase beta subunit [Photobacterium leiognathi]
 gi|110264887|gb|ABG57019.1| DNA gyrase beta subunit [Photobacterium leiognathi]
 gi|110264891|gb|ABG57021.1| DNA gyrase beta subunit [Photobacterium leiognathi]
 gi|110264893|gb|ABG57022.1| DNA gyrase beta subunit [Photobacterium leiognathi]
 gi|110264895|gb|ABG57023.1| DNA gyrase beta subunit [Photobacterium leiognathi]
 gi|146447332|gb|ABQ41311.1| DNA gyrase beta subunit [Photobacterium leiognathi]
          Length = 404

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 153/414 (36%), Positives = 239/414 (57%), Gaps = 15/414 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I  Q +  G+P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIKRGGHIHQQVYRHGVPDAPLAVIGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             ++ GTRI F P  + F +   F    L K  +  ++L+  V    + ++E        
Sbjct: 61  T-DETGTRIRFWPSEETFTN-IEFQYEILAKRLRELSFLNSGVSIKLNDERE------EG 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F + GG++ +++    N++ I  ++F   +E+      +VE A+ W +     I  
Sbjct: 113 KHDHFMYEGGIQAFVEHLNRNKTPIHPKVFHFDSERDD--GISVEVAMQWNDGFQESIFC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV + 
Sbjct: 171 FTNNIPQRDGGTHLAGFRGALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVISVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ +    +L++NP +A  +   +I+ S      R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKAAVESAMNEKLAEFLLENPADAKTVCTKIIDASRAREAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVD 547
           KILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDADVD
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDADVD 404


>gi|328349763|emb|CBY89189.1| GyrB protein [Flavobacterium sp. R-36961]
          Length = 414

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 161/410 (39%), Positives = 233/410 (56%), Gaps = 11/410 (2%)

Query: 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA-RQ 176
           V  H K    S LE+++T + AGGKFD  +Y++SGGLHGVG+SVVNALS+ L  TV    
Sbjct: 1   VGIHKK-EGVSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSD 59

Query: 177 NTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAY 236
             I+ Q++ +G  L P+++  +    RGT +TF PDP IF     +    L    +  +Y
Sbjct: 60  GKIYEQEYEKGKALYPVKQIGETTK-RGTIVTFYPDPTIFTQTVEYSYDTLSARMRELSY 118

Query: 237 LSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG 296
           L+  +   ++  +E  +K G    E F+   GLK Y++    NR  I + + +   EK  
Sbjct: 119 LNKGITVTFTDKRE-LDKDGNFVSEIFHSDEGLKEYIRYLDGNREPIIAHVISMDNEK-- 175

Query: 297 THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KR 353
                VE A+ +       I SY N I T EGGTH  G R  LTR +KKYA+ +    K 
Sbjct: 176 -GEVPVEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGMLDKL 234

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
              I  DD       I+SV ++EP+F GQTKTKL + +    V  A+ +  ++YL +NP 
Sbjct: 235 KFDISGDDFREGLTAIISVKVQEPQFEGQTKTKLGNREVVSPVSQAVSEMIENYLEENPN 294

Query: 414 EATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
           +A  +++ VI  ++ R   +K RE+  RKT +    LPGKL+DCS+      E+++VEGD
Sbjct: 295 DARIIVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGD 354

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           SAGG+AKQ R+R+ QA+LPLRGKILNV  A   K+  N++I ++  ALG 
Sbjct: 355 SAGGTAKQGRDRAFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGV 404


>gi|227121271|gb|ACP19327.1| GyrB [Leptospirillum ferriphilum]
          Length = 405

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 155/415 (37%), Positives = 230/415 (55%), Gaps = 13/415 (3%)

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKF+N+ Y++SGGLHGVG+SVVNALS+ L + + +   I  Q + +G P +PL 
Sbjct: 1   TVLHAGGKFNNNLYKVSGGLHGVGVSVVNALSETLFLEIHQNGLIHRQTYHKGTPDAPLA 60

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
              +   +RGT I F PD  I      F    L    +  A+L+  +      ++ + E 
Sbjct: 61  VFGETT-QRGTIIRFWPDMTIMET-DQFSFDTLAHRFRELAFLNPVLTIHLKDEETLRE- 117

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE 314
                 E F+F GG+++++    EN+  +   +F  KT + G+ +  V +      EN  
Sbjct: 118 ------ETFHFEGGVQSFVSFLNENKKTLHDVLFFRKTLEDGS-QFEVAFQYQESTENET 170

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFI 374
           +  + N I T EGGTH  G R A+T+ I ++    Q  +   +  +D+     GI+SV I
Sbjct: 171 VLGFANNIHTREGGTHVRGFRTAITKTINRFIREKQLNKGEEVRGEDVREGLTGIISVRI 230

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
             P+F GQTK KL S      +E+ L +       ++P+ A K+ E  +  ++ R   RK
Sbjct: 231 PGPQFEGQTKAKLGSSWVAGAMESFLSEALQEKFEEDPLTAKKIAEKAVLTAQAREAARK 290

Query: 435 QRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            ++   RK  +    LPGKLADC ++    +EL+IVEGDSAGGSAKQ R+R +QA+LPL+
Sbjct: 291 AKDLAKRKNVLEGSNLPGKLADCQESDPAKSELYIVEGDSAGGSAKQGRDRRSQAILPLK 350

Query: 494 GKILNVASAG-SEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADV 546
           GKILNV  +   EK   N ++  L+ A+GC    +   E+ LRY K+IIMTDADV
Sbjct: 351 GKILNVEKSRGIEKFITNDEVRALITAVGCGLGEEEFSEKKLRYHKIIIMTDADV 405


>gi|2232283|gb|AAC34929.1| gyrase beta subunit [Shewanella amazonensis SB2B]
          Length = 419

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 151/430 (35%), Positives = 239/430 (55%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T L    KF++++Y++SGGLHGVG+SVVNALS +L +T+ R   +  Q ++ G+P 
Sbjct: 1   EVIMTVLRPLKKFEDNSYKVSGGLHGVGVSVVNALSKKLQLTIRRDGKVHEQFYTHGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P++         GT + F P  + F D   F    L K  +  ++L+  V      +++
Sbjct: 61  APIKVVGDATK-TGTEVRFWPSEETFSDTL-FHFDILAKRVRELSFLNSGVGIRLVDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             +       E F + GG+  +++    N++ ++ +IF    E++     TVE A+ W +
Sbjct: 119 NKD-------EFFKYEGGISAFVEYLNRNKTPVNKDIFHFAQERED--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYA--ELTQNKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R ALT  +  Y   E    K   +   DD      
Sbjct: 170 GFQENIYCFTNNIPHRDGGTHLAGFRGALTGNLNNYMEAEGYNKKNKTNATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+   
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGEKLGDYLLENPGDAKLIVGKIIDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +E++IVEGDSAGG AKQ RNR N
Sbjct: 290 AREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGFAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+  +Q++  L+ ALGC   R +Y  +  RY+ + ++TDA 
Sbjct: 350 QAILPLKGKILNVEKARFDKMLFSQEVATLITALGCGIGRDEYDPDKTRYQYIFMVTDAY 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHILTLL 419


>gi|225077504|ref|ZP_03720703.1| hypothetical protein NEIFLAOT_02567 [Neisseria flavescens
           NRL30031/H210]
 gi|224951166|gb|EEG32375.1| hypothetical protein NEIFLAOT_02567 [Neisseria flavescens
           NRL30031/H210]
          Length = 565

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 128/331 (38%), Positives = 189/331 (57%), Gaps = 8/331 (2%)

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
               ++ +  +IF    EK G    +VE A+ W +     +  + N I   +GGTH + L
Sbjct: 1   MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 57

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R  +TR I  Y E  +   K  +    DD+      +LSV + +P+F+ QTK KLVS + 
Sbjct: 58  RQVMTRTINNYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEI 117

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
              V   +      +L +NP EA  +   +++ +  R   RK RE+ R+   +  L LPG
Sbjct: 118 GPVVNEVINQALTDFLEENPTEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 177

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSA Q R+R  QA+LPL+GKILNV  A  EK+  +Q
Sbjct: 178 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 237

Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++  L+ ALG     +    E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ 
Sbjct: 238 EVATLITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 297

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           ++++  PPL++   G +  Y  DE  K + L
Sbjct: 298 YIYIAQPPLYKAKYGKQERYLKDELEKDQWL 328



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%)

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           ++ +G      +D +  +  L+      +  + I R+KGLGEM   QL ET MD   R L
Sbjct: 467 KLYKGDNE---YDIDSFEGALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPTVRRL 523

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686
           L+V I   +       +    LMG + + R  FI+  A    ++  
Sbjct: 524 LKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALLAQNIDA 565


>gi|91064759|emb|CAJ76131.2| DNA gyrase B subunit [Shewanella fidelis]
          Length = 416

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 157/419 (37%), Positives = 238/419 (56%), Gaps = 16/419 (3%)

Query: 136 TLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK 195
            LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L +T+ R   ++ Q ++ G P  P+++
Sbjct: 1   VLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLQLTIRRDGKVYEQFYTMGEPDEPIKE 60

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
             +  N  GT I F P  + F D   F    L K  +  ++L+  V      ++E  +  
Sbjct: 61  VGEASN-TGTEIRFWPSEETFSDVN-FHFDILAKRVRELSFLNSGVGIRLVDEREDRD-- 116

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PE 314
                E F + GG+  ++     N++ ++ E+F    E++     TVE A+ W +     
Sbjct: 117 -----EFFKYEGGISAFVDFLNVNKTPVNKEVFHFCQERED--GITVEVAMQWNDGFQEN 169

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSV 372
           I  + N I   +GGTH +G R ALTR +  Y E      K   +   DD       ++SV
Sbjct: 170 IFCFTNNIPQRDGGTHLAGFRGALTRNLNNYMEREGFNKKGKTAATGDDAREGLTAVISV 229

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLR 431
            + +P+F+ QTK KLVS + +  VE  + +    YL+++P EA  ++  +I+        
Sbjct: 230 KVPDPKFSSQTKDKLVSSEVKSAVEQTMGEQLGDYLMEHPNEAKLIVGKIIDAARAREAA 289

Query: 432 RRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           R+ +    RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR NQA+LP
Sbjct: 290 RKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILP 349

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGA 549
           L+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  +  RY  ++IMTDADVDG+
Sbjct: 350 LKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYDPDKTRYHNIVIMTDADVDGS 408


>gi|285013336|gb|ADC32656.1| DNA gyrase subunit B [Pseudomonas putida]
          Length = 405

 Score =  240 bits (611), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 156/416 (37%), Positives = 236/416 (56%), Gaps = 16/416 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKFD+++Y++SGGLHGVG+SVVNALS++L +TV R   I+ Q +  G+P +P+    
Sbjct: 1   HAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +     GT I F+P  + F +   F    L K  +  ++L+  V      ++   E    
Sbjct: 61  E-SETTGTHIHFKPSAETFKNIH-FSWDILAKRIRELSFLNSGVGILLKDERSGKE---- 114

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
              E F + GGL+ +++    N++ ++S++F    ++       VE A+ W +     + 
Sbjct: 115 ---EFFKYEGGLRAFVEYLNTNKTPVNSQVFHFNVQRDD--GVGVEVALQWNDSFNENLL 169

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
            + N I   +GGTH  G R +LTR +  Y E      K  ++   DD       I+SV +
Sbjct: 170 CFTNNIPQRDGGTHLVGFRSSLTRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKV 229

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRR 433
            +P+F+ QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+        R+
Sbjct: 230 PDPKFSSQTKDKLVSSEVKTAVEQEMNKYFADFLLENPNEAKAVVGKMIDAARAREAARK 289

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            +    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+
Sbjct: 290 AREMTRRKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLK 349

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDG 548
           GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG
Sbjct: 350 GKILNVEKARFDKMISSQEVGTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDG 405


>gi|269799078|gb|ACZ43817.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 364

 Score =  240 bits (611), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 125/375 (33%), Positives = 203/375 (54%), Gaps = 16/375 (4%)

Query: 92  GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           G+   I V++  +G ++V D+GRGIPV+ H +    S  E+ILT LHAGGKFD+++Y++S
Sbjct: 1   GHCTDIVVTIHDDGSVSVSDDGRGIPVDIHEE-EGVSAAEVILTVLHAGGKFDDNSYKVS 59

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS++L +T+ R   I +Q +  G+P  P+ +   V +  GT + F P
Sbjct: 60  GGLHGVGVSVVNALSEKLELTIFRHGKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFWP 118

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++E        + + F + GG+K 
Sbjct: 119 SHETFTNTL-FHYDILAKRLRELSFLNSGVSIKLIDERED------GKSDHFVYEGGIKA 171

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++     N++ I+ + F    E++     TVE A+ W +     I  + N I   +GGTH
Sbjct: 172 FVDYLNVNKTPINKDAFHFSVERED--GITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTH 229

Query: 331 ESGLRVALTRGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
            +G R ALTR +  Y E     +  ++ +   DD       ++SV + +P+F+ QTK KL
Sbjct: 230 LAGFRGALTRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKL 289

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRK 446
           VS + +  VE A+ +    YL++NP EA+ ++  +I+        R+ +    RK A+  
Sbjct: 290 VSSEVKSAVEQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKARDMTRRKGALDL 349

Query: 447 LRLPGKLADCSQNIA 461
             LPGKLADC +   
Sbjct: 350 AGLPGKLADCQEKDP 364


>gi|198250525|gb|ACH85244.1| DNA gyrase subunit B [Bacillus azotoformans]
          Length = 405

 Score =  240 bits (611), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 161/415 (38%), Positives = 228/415 (54%), Gaps = 14/415 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKF    Y++SGGLHGVG SVVNALS EL V V     I   KF RG  +  L+   
Sbjct: 1   HAGGKFGGGGYKVSGGLHGVGASVVNALSTELEVFVHLDGKIHYIKFERGAVVEELKVIG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +  +K GT + F PDP+IF +   ++   L    +  A+L+  +       +        
Sbjct: 61  ET-DKTGTIVHFSPDPEIFQETTVYEYDVLATRLRELAFLNRGLNLIIEDKR------PE 113

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
            + + + + GG+ +Y++    +R +I  E      EK G    T E A+ + +     I 
Sbjct: 114 GKTQHWCYEGGIISYVEHLNRSREVIHEEPVYVMGEKDGI---TAEVALQYNDSYVSNIY 170

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFI 374
           S+ N I T EGGTHE G + ALTR I  YA  +   +    ++  DD+      I+SV  
Sbjct: 171 SFANNIHTYEGGTHEVGFKTALTRVINDYARKSGMFKENDPNLTGDDVREGLTTIISVKH 230

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            +P+F GQTKTKL + + +  V++   +  D +L++NP    K++E  +  S  R+  +K
Sbjct: 231 PDPQFEGQTKTKLGNSEVRAIVDSVFSEQLDKFLMENPSVGKKIVEKGLMASRARIAAKK 290

Query: 435 QRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            RE   RK A+    LPGKLADCS   A  +EL+IVEGDSAGGSAK  R+R  QA+LPLR
Sbjct: 291 ARELTRRKGALEISSLPGKLADCSSKDASISELYIVEGDSAGGSAKSGRDRHFQAILPLR 350

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           GKILNV  A  ++I +N +I  ++ ALG      +     RY K++IMTDADVDG
Sbjct: 351 GKILNVEKARLDRILSNNEIRTIITALGTGIGEDFDISKARYHKIVIMTDADVDG 405


>gi|307939288|gb|ADN95835.1| DNA gyrase B [Hymenobacter antarcticus]
          Length = 436

 Score =  240 bits (611), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 167/441 (37%), Positives = 248/441 (56%), Gaps = 27/441 (6%)

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           +T   AGGKFD  +Y++SGGLHGVG+S VNALS +L VTV R    + Q++  GIP   +
Sbjct: 1   MTVXXAGGKFDKGSYKVSGGLHGVGVSCVNALSTDLKVTVRRNGHKYEQEYKIGIPQYDV 60

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           ++   +  + GT + F PD  IF +   +    +    +  +YL+  ++   +  +E  E
Sbjct: 61  KEVG-LSEEHGTEVQFLPDASIFTE-TEYRYDTVAGRLRDLSYLNKGIRITLTDRREKLE 118

Query: 254 KYGIPEKEEFYFPGGLKTYLQT-KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
             G+   EEFY  GGL+ ++Q    E R  + SE    ++EK GT    VE A+ +    
Sbjct: 119 -GGVFRGEEFYSTGGLRDFVQYLDGEQRPSLLSEPIYVESEKGGTP---VEVALQYNTSY 174

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGI 369
              + SY N I T EGGTH +G R A+TR +K Y +  +   K  + I  DD       +
Sbjct: 175 QENVYSYVNNINTIEGGTHVAGFRSAVTRVLKTYGDKNKLFEKAKVEITGDDFREGLTAV 234

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           +SV ++EP+F GQTKTKL + +    V + + +    YL +NP +A +++E VI  ++ R
Sbjct: 235 ISVKVQEPQFEGQTKTKLGNSEVSGAVNSVVGEILTQYLDENPNQANRIMEKVILAAKAR 294

Query: 430 LRRRKQREVNRKTAIRKLRL-PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
           +  RK +++ ++  +      PGKLADCS++     EL++VEGDSAGG+AKQ RNR+ QA
Sbjct: 295 IAARKAKDMVQRKGVLSSNSLPGKLADCSESDPEICELYLVEGDSAGGTAKQGRNRAFQA 354

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY----------------REED 532
           +LPLRGKILNV  A   +I  N++I +++ ALG     +                     
Sbjct: 355 ILPLRGKILNVEKAQEHRILENEEIKNMITALGVTFNERKSLAFTTDDDGTESGPLNFSK 414

Query: 533 LRYEKVIIMTDADVDGAHIAS 553
           LRY KVIIMTDADVDG+HI +
Sbjct: 415 LRYHKVIIMTDADVDGSHIRT 435


>gi|195941192|ref|ZP_03086574.1| DNA topoisomerase IV subunit B [Escherichia coli O157:H7 str.
           EC4024]
          Length = 411

 Score =  240 bits (611), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 148/425 (34%), Positives = 218/425 (51%), Gaps = 18/425 (4%)

Query: 186 RGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244
            G  +  L+      +   GT + F PD + F D   F  +RL  + ++KA L   V+  
Sbjct: 1   NGEKVQDLQVVGTCGKRNTGTSVHFWPD-ESFFDSPRFSVSRLTHLLKAKAVLCPGVEIT 59

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
           +       E       + + +  GL  YL   +     +  + F G  E        V+W
Sbjct: 60  FKDHVNNTE-------QSWRYEKGLNDYLCEAVNGLPTLPEKPFVGNFEGDTE---AVDW 109

Query: 305 AIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDD 361
           A+ W  E  E    SY N I T  GGTH +GLR  L   ++++ E      R + + ++D
Sbjct: 110 ALLWLPEGGELLTESYVNLIPTLLGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAED 169

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
           +      +LSV +++P+FAGQTK +L S      V   ++D F  +L QN   A  L E 
Sbjct: 170 IWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFTLWLNQNVQAAEMLAEM 229

Query: 422 VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
            I  ++ RLR    ++V RK       LPGKLADC+    + TELF+VEGDSAGGSAKQA
Sbjct: 230 AISSAQRRLR--AAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQA 287

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541
           R+R  QA++PL+GKILN     S+++  +Q++ D+  A+G    S      LRY K+ I+
Sbjct: 288 RDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDL-SQLRYGKICIL 346

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
            DAD DG HIA+LL   F +    L++  H+ +  PPL+RI  G +  YA  EE K  +L
Sbjct: 347 ADADSDGLHIATLLCALFVKHFRALVKNGHVHVALPPLYRIDLGKEVYYALTEEEKAGVL 406

Query: 602 EEFKK 606
           E+ K+
Sbjct: 407 EQLKR 411


>gi|155029069|dbj|BAF75420.1| DNA gyrase B [Sporosarcina saromensis]
 gi|161085592|dbj|BAF93883.1| DNA gyrase B [Sporosarcina sp. HG646]
 gi|161085594|dbj|BAF93884.1| DNA gyrase B [Sporosarcina sp. HG711]
          Length = 391

 Score =  239 bits (610), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 142/400 (35%), Positives = 217/400 (54%), Gaps = 13/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS+   V V R   + +  F RG+    LE   +  ++ G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSEYTEVYVRRDEKVHAITFERGVVTKELEVIGET-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           TRI F+ DP+IF +   ++   L    +  AYL+  ++   + ++E          + F+
Sbjct: 60  TRIRFKADPEIFLETTVYEYEILAHRLRELAYLNRGLRISITDEREE-----EKRVDTFH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K+Y++   +N+  I  +    + EK G    ++E A+ +       + S+ N I 
Sbjct: 115 YEGGIKSYVEHLNKNKEPIHEDPIFIEGEKDGI---SIEIAMQYNSGFAENLFSFANNIN 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHESG + ALTR +  YA      +    ++  DD+      I+SV   +P+F G
Sbjct: 172 TYEGGTHESGFKTALTRVVNDYARKNGIIKESDPNLSGDDVREGLTAIISVKHPDPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + +          + F  +L++NPI A  +++  +  +  R+  +  RE   R
Sbjct: 232 QTKTKLGNSEVSTITNALFSEGFQRFLLENPITARLVIDKSLMAARARIAAKNARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKL+DCS      +EL+IVEGDSAGGSAK  R+R  QA+LPLRGKILNV 
Sbjct: 292 KSALEVSSLPGKLSDCSSRDPKISELYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  ++I  N +I  ++ ALG     ++     RY K+II
Sbjct: 352 KARLDRILGNAEIRMMITALGTGIGGEFDLSKARYHKIII 391


>gi|161085588|dbj|BAF93881.1| DNA gyrase B [Sporosarcina sp. YM9-149]
          Length = 391

 Score =  239 bits (610), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 141/400 (35%), Positives = 217/400 (54%), Gaps = 13/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS+   V V R   + +  F RG+    LE   +  ++ G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSEYTEVYVRRDEKVHAITFERGVVTKELEVIGET-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           TRI F+ DP+IF +   ++   L    +  AYL+  ++   + ++E          + F+
Sbjct: 60  TRIRFKADPEIFLETTVYEYEILAHRLRELAYLNRGLRISITDEREE-----EKRVDTFH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K+Y++   +N+  I  +    + EK G    ++E A+ +       + S+ N I 
Sbjct: 115 YEGGIKSYVEHLNKNKEPIHEDPIFIEGEKDGI---SIEIAMQYNSGFAENLFSFANNIN 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHESG + ALTR +  YA      +    ++  DD+      I+SV   +P+F G
Sbjct: 172 TYEGGTHESGFKTALTRVVNDYARKNGIIKESDPNLSGDDVREGLTAIISVKHPDPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + +          + F  +L++NPI A  +++  +  +  R+  +  RE   R
Sbjct: 232 QTKTKLGNSEVSTITNALFSEGFQRFLLENPITARLVVDKSLMAARARIAAKNARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKL+DCS      +EL+IVEGDSAGGSAK  R+R  QA+LPLRGKILNV 
Sbjct: 292 KSALEVSSLPGKLSDCSSRDPKISELYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  ++I  N +I  ++ ALG     ++     RY K++I
Sbjct: 352 KARLDRILGNAEIRMMITALGTGIGGEFDLSKARYHKIVI 391


>gi|94990121|ref|YP_598221.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS10270]
 gi|94543629|gb|ABF33677.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS10270]
          Length = 196

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 71/196 (36%), Positives = 111/196 (56%), Gaps = 10/196 (5%)

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549
           +P+RGKILNV  A  +KI  N++I  L  A+G    + +     RY+K++IMTDADVDGA
Sbjct: 1   MPIRGKILNVEKATMDKILANEEIRSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGA 60

Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHD----EEHKQKILEEF 604
           HI +LLLT  Y+ M  ++E  ++++  PP++ +  G++   Y       E+  +  LE++
Sbjct: 61  HIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKEYIQPGIDQEDQLKTALEKY 120

Query: 605 KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMG 664
              G+ K  + R+KGLGEM   QL ET MD   R + RV ++       +     + LMG
Sbjct: 121 S-IGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDD----AAEADKVFDMLMG 175

Query: 665 TKADERFKFIQERASF 680
            + + R  FI+E A +
Sbjct: 176 DRVEPRRDFIEENAVY 191


>gi|269799086|gb|ACZ43821.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 368

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 126/379 (33%), Positives = 204/379 (53%), Gaps = 16/379 (4%)

Query: 93  YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
           +   I V++  +G ++V D+GRGIPV+ H +    S  E+ILT LHAGGKFD+++Y++SG
Sbjct: 1   HCTDIVVTIHDDGSVSVSDDGRGIPVDIHEE-EGVSAAEVILTVLHAGGKFDDNSYKVSG 59

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS +L +T+ R   I +Q +  G+P  P+ +   V +  GT + F P 
Sbjct: 60  GLHGVGVSVVNALSKKLELTIFRHGKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFWPS 118

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            + F +   F    L K  +  ++L+  V      ++E        + + F + GG+K +
Sbjct: 119 HETFTNTL-FHYDILAKRLRELSFLNSGVSIKLIDERED------GKSDHFVYEGGIKAF 171

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           +     N++ I+ + F    E++     TVE A+ W +     I  + N I   +GGTH 
Sbjct: 172 VDYLNVNKTPINKDAFHFSVERED--GITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHL 229

Query: 332 SGLRVALTRGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           +G R ALTR +  Y E     +  ++ +   DD       ++SV + +P+F+ QTK KLV
Sbjct: 230 AGFRGALTRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLV 289

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE A+ +    YL++NP EA+ ++  +I+        R+ +    RK A+   
Sbjct: 290 SSEVKSAVEQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKARDMTRRKGALDLA 349

Query: 448 RLPGKLADCSQNIAHGTEL 466
            LPGKLADC +     +EL
Sbjct: 350 GLPGKLADCQEKDPALSEL 368


>gi|110612709|gb|ABG78317.1| GyrB [uncultured bacterium]
          Length = 409

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 158/421 (37%), Positives = 245/421 (58%), Gaps = 17/421 (4%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+++Y++SGGLHGVG+SVVNALS+ LH+ + R+  +  Q++  G  + PL+     
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEHLHLLIKREGKLHEQEYRNGDAVYPLQVVADA 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
           +   GT I F+P  K+F     F+   L +  +  ++L+  V+      ++        +
Sbjct: 61  QG-TGTEIRFKPSAKVFT-HIQFNYDILARRLRELSFLNSGVRILLHDQRD-------DK 111

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
            + F + GG+K +++    N++ +   +F    E +   R TVE A+ W +     +  +
Sbjct: 112 HDVFQYQGGIKAFVEHLNRNKTALHETVFHFIAEHE---RTTVEIALQWNDSYQETVYCF 168

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +G R A TR I  Y E      K  I +  DD      GI+SV + +
Sbjct: 169 TNNIPQRDGGTHLAGFRAAPTRTINNYIETEGLLKKEKIPMTGDDAREGLTGIVSVKLPD 228

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F+ QTK KLVS + +  VE+ +   F+ +L++ P+E+  ++  VIE +  R   RK R
Sbjct: 229 PKFSSQTKDKLVSSEVRGVVESLMAGKFEEFLLEKPVESKIIVGKVIEAARAREAARKAR 288

Query: 437 -EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
               RK A+    LPGKLADC +     +ELF+VEGDSAGGSAKQ R+R  QA+LPL+GK
Sbjct: 289 EMTRRKGALDVAGLPGKLADCQERDPALSELFLVEGDSAGGSAKQGRDRKCQAILPLKGK 348

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           ILNV  A  +K+ ++ ++  L+ ALGC   + ++  + LRY ++II+TDADVDG+HI +L
Sbjct: 349 ILNVEKARFDKMLSSVEVGTLITALGCGIGKEEFNIDKLRYYRIIIITDADVDGSHIRTL 408

Query: 555 L 555
           L
Sbjct: 409 L 409


>gi|307939294|gb|ADN95838.1| DNA gyrase B [Hymenobacter antarcticus]
          Length = 435

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 168/441 (38%), Positives = 249/441 (56%), Gaps = 27/441 (6%)

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           +T L AGGKFD  +Y++SGGLHGVG+S VNALS +L VTV R    + Q++  GIP   +
Sbjct: 1   MTVLXAGGKFDKGSYKVSGGLHGVGVSCVNALSTDLKVTVRRNGHKYEQEYKIGIPQYDV 60

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           ++   +  + GT + F PD  IF +   +    +    +  +YL+  ++   +  +E  E
Sbjct: 61  KEVG-LSEEHGTEVQFLPDASIFTE-TEYRYDTVAGRLRDLSYLNKGIRITLTDRREKLE 118

Query: 254 KYGIPEKEEFYFPGGLKTYLQT-KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
             G+   EEFY  GGL+ ++Q    E R  + SE    ++EK GT    VE A+ +    
Sbjct: 119 -GGVFRGEEFYSTGGLRDFVQYLDGEQRPSLLSEPIYVESEKGGTP---VEVALQYNTSY 174

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGI 369
              + SY N I T EGGTH +G R A+TR +K Y +  +   K  + I  DD       +
Sbjct: 175 QENVYSYVNNINTIEGGTHVAGFRSAVTRVLKTYGDKNKLFEKAKVEITGDDFREGLTAV 234

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           +SV ++EP+F GQTKTKL + +    V + + +    YL +NP +A +++E VI  ++ R
Sbjct: 235 ISVKVQEPQFEGQTKTKLGNSEVSGAVNSVVGEILTQYLDENPNQANRIMEKVILAAKAR 294

Query: 430 LRRRKQREVNRKTAIRKLRL-PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
           +  RK +++ ++  +      PGKLADCS++     EL++VEGDSAGG+AKQ RNR+ QA
Sbjct: 295 IAARKAKDMVQRKGVLSSNSLPGKLADCSESDPEICELYLVEGDSAGGTAKQGRNRAFQA 354

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY----------------REED 532
           +LPLRGKILNV  A   +I  N++I +++ ALG     +                     
Sbjct: 355 ILPLRGKILNVEKAQEHRILENEEIKNMITALGVTFNERKSLAFTTDDDGTESGPLNFTK 414

Query: 533 LRYEKVIIMTDADVDGAHIAS 553
           LRY KVIIMTDADVDG+HI +
Sbjct: 415 LRYHKVIIMTDADVDGSHIPT 435


>gi|307939314|gb|ADN95848.1| DNA gyrase B [Hymenobacter glaciei]
          Length = 435

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 165/441 (37%), Positives = 244/441 (55%), Gaps = 27/441 (6%)

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T L AGGKFD  +Y++SGG HGVG+S VNALS +L VTV R    + Q++  G P  P++
Sbjct: 1   TVLXAGGKFDKGSYKVSGGPHGVGVSCVNALSTDLKVTVRRNGHKYEQEYKIGFPQYPVK 60

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
           +        GT + F PD  IF +   +   ++    +  +YL+  ++   +  +E  E 
Sbjct: 61  EVGDTAEH-GTEVQFLPDASIFTETV-YQYDKVAGRLRDLSYLNKGIRITLTDRRETVED 118

Query: 255 YGIPEKEEFYFPGGLKTYLQT-KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
                 EEFY  GGL+ ++Q    E R  + SE    ++EK GT    VE A+ +     
Sbjct: 119 G-SFRGEEFYSTGGLRDFVQYLDGEQRPSLLSEPIYVESEKGGTP---VEVALQYNTSYQ 174

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGIL 370
             + SY N I T EGGTH +G R A+TR +K Y +  +   K  + I  DD       ++
Sbjct: 175 ENVYSYVNNINTIEGGTHVAGFRSAVTRVLKTYGDKNKLFEKAKVDITGDDFREGLTAVI 234

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV + EP+F GQTKTKL + +    V + + +    YL +NP +A +++E VI  ++ R+
Sbjct: 235 SVKVMEPQFEGQTKTKLGNSEVSGAVNSVVGEILTQYLDENPNQANRIMEKVILAAKARI 294

Query: 431 RRRKQREVNRKTAIRKLRL-PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK +++ ++  +      PGKLADCS++     EL++VEGDSAGG+AKQ RNR+ QA+
Sbjct: 295 AARKAKDMVQRKGVLSSNSLPGKLADCSESDPAICELYLVEGDSAGGTAKQGRNRAFQAI 354

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY----------------REEDL 533
           +PLRGKILNV  A   +I  N++I +++ ALG     +                   + L
Sbjct: 355 MPLRGKILNVEKAQEHRILENEEIRNMITALGVSFNERKSLAFTTDDTGVETGPLNFDKL 414

Query: 534 RYEKVIIMTDADVDGAHIASL 554
           RY KVIIMT ADVDG+HI +L
Sbjct: 415 RYHKVIIMTXADVDGSHIRTL 435


>gi|163256301|dbj|BAF95661.1| DNA gyrase subunit B [Bradyrhizobium sp. KO3A]
          Length = 270

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 103/279 (36%), Positives = 154/279 (55%), Gaps = 11/279 (3%)

Query: 78  FSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137
             EV+DNA+DE +AG+A  ++V L+ +  +TV D+GRGIPV+ H K    S  E+I+T L
Sbjct: 1   VYEVVDNAIDEALAGHATRVDVVLNADNSVTVRDDGRGIPVDIH-KGEGISAAEVIMTQL 59

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKFD ++Y++SGGLHGVG+SVVNALS +L + + R +     +F+ G  ++PL+   
Sbjct: 60  HAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHGDAVAPLKVVG 119

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
               +RGT +TF   P+ F +   +D A L    +  A+L+  V    S  +   EK   
Sbjct: 120 DAPGRRGTEVTFLASPETFKN-IEYDFATLEHRLRELAFLNSGVNIILSDMRHAVEKR-- 176

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-T 316
              EE ++ GG++ +++    N+  I       + E  G     VE A+ W +   E   
Sbjct: 177 ---EEMHYSGGVEEFVKYLDRNKKAIVPAPIMVRAEANGI---GVEAALWWNDSYHENVL 230

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI 355
            + N I   +GGTH +G R ALTR +  YAE    K  I
Sbjct: 231 CFTNNIPQRDGGTHLAGFRGALTRQVNGYAEANAKKEKI 269


>gi|148971275|gb|ABR20175.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 434

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 166/445 (37%), Positives = 230/445 (51%), Gaps = 31/445 (6%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD   Y+I+GGLHGVG+ VVNALS  L   V R   I+ +KF +G+P 
Sbjct: 1   EVIMTVLHAGGKFDKKVYKITGGLHGVGVHVVNALSRLLIAVVKRPEGIYYEKFEKGVPS 60

Query: 191 SPLE-----KKEKVRNK------------RGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
             L                           G  I F PDP++F D   F    + +  + 
Sbjct: 61  GGLRFVEKGSWGNTGEPEIDSIEPKLAQDHGLIIKFYPDPEVFEDLN-FSYQVIHERIKE 119

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            A+L+ +V      ++  A        E  +F GGL  ++    E    I  E      E
Sbjct: 120 LAFLNPQVAISIKDERINA-------SEVMHFEGGLSQFVDYLGEGHQSILKEPIYNLEE 172

Query: 294 KKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK 352
            + T    VE+A  +    +  + SY N I T EGGTH +G R  L+R ++ YA+     
Sbjct: 173 TEDT---VVEFAFLYNNSTSEIMQSYVNNISTVEGGTHVTGFRAGLSRAVQDYAKNHDLV 229

Query: 353 RAISII-SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           + +  I SDD+    V +L V +  P+F GQTK+KL +   +  V+++       Y    
Sbjct: 230 KGVESIVSDDVREGLVAVLHVKVIAPQFEGQTKSKLGNSTVRGIVQSSTEKYLKSYFESF 289

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P  A  ++  VI  +  R   R  +E V RK+A+    LPGKLADC+ +     EL+IVE
Sbjct: 290 PNIAQNIVRRVIMAAAAREASRNAKELVRRKSALESGNLPGKLADCTSSDPAKAELYIVE 349

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530
           G+SAGGSAKQAR R  QA+LPLRGKILNV  A   K   N++I +L+  +G   +     
Sbjct: 350 GESAGGSAKQARTRDYQAILPLRGKILNVEKAADIKTLANEEIRNLITVMGTNIKDSLDL 409

Query: 531 EDLRYEKVIIMTDADVDGAHIASLL 555
             LRY K+IIMTDADVDG+HI +LL
Sbjct: 410 SKLRYGKIIIMTDADVDGSHIRTLL 434


>gi|161085590|dbj|BAF93882.1| DNA gyrase B [Sporosarcina sp. HG644]
          Length = 391

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 141/400 (35%), Positives = 216/400 (54%), Gaps = 13/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS+   V V R   + +  F RG+    LE      ++ G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSEHTEVYVRRDEKVHAISFERGVVTKELEVIGDT-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           TRI F+ DP+IF +   ++   L    +  AYL+  ++   + ++E          + F+
Sbjct: 60  TRIRFKADPEIFLETTVYEYEILAHRLRELAYLNRGLRISITDEREE-----EKRVDTFH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K+Y++   +N+  I  +    + EK G    ++E A+ +       + S+ N I 
Sbjct: 115 YEGGIKSYVEHLNKNKEPIHEDPIFIEGEKDGI---SIEIAMQYNSGFAENLFSFANNIN 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHESG + ALTR +  YA      +    ++  DD+      I+SV   +P+F G
Sbjct: 172 TYEGGTHESGFKTALTRVVNDYARKNGIIKESDPNLSGDDVREGLTAIISVKHPDPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + +          + F  +L++NPI A  +++  +  +  R+  +  RE   R
Sbjct: 232 QTKTKLGNSEVSTITNALFSEGFQRFLLENPITARLVIDKSLMAARARIAAKNARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKL+DCS      +EL+IVEGDSAGGSAK  R+R  QA+LPLRGKILNV 
Sbjct: 292 KSALEVSSLPGKLSDCSSRDPKISELYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  ++I  N +I  ++ ALG     ++     RY K++I
Sbjct: 352 KARLDRILGNAEIRMMITALGTGIGGEFDLSKARYHKIVI 391


>gi|161085582|dbj|BAF93878.1| DNA gyrase B [Sporosarcina sp. YM6-219]
          Length = 391

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 141/400 (35%), Positives = 217/400 (54%), Gaps = 13/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS+   V V R   + +  F RG+    LE   +  ++ G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSEHTEVYVRRDEKVHAISFERGVVTKELEVIGET-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           TRI F+ DP+IF +   ++   L    +  AYL+  ++   + ++E          + F+
Sbjct: 60  TRIRFKADPEIFLETTVYEYEILAHRLRELAYLNRGLRISITDEREE-----EKRVDTFH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K+Y++   +N+  I  +    + EK G    ++E A+ +       + S+ N I 
Sbjct: 115 YEGGIKSYVEHLNKNKEPIHEDPIFIEGEKDGI---SIEIAMQYNSGFAENLFSFANNIN 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHESG + ALTR +  YA      +    ++  DD+      I+SV   +P+F G
Sbjct: 172 TYEGGTHESGFKTALTRVVNDYARKNGIIKESDPNLSGDDVREGLTAIISVKHPDPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + +          + F  +L++NPI A  +++  +  +  R+  +  RE   R
Sbjct: 232 QTKTKLGNSEVSTITNALFSEGFQRFLLENPITARLVVDKSLMAARARIAAKNARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKL+DCS      +EL+IVEGDSAGGSAK  R+R  QA+LPLRGKILNV 
Sbjct: 292 KSALEVSSLPGKLSDCSSRDPKISELYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  ++I  N +I  ++ ALG     ++     RY K++I
Sbjct: 352 KARLDRILGNAEIRMMITALGTGIGGEFDLSKARYHKIVI 391


>gi|148971279|gb|ABR20177.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 432

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 168/443 (37%), Positives = 249/443 (56%), Gaps = 29/443 (6%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD   Y+++GGLHGVG+ VVNALS +L   V +  T++ ++F +GIP 
Sbjct: 1   EVIMTVLHAGGKFDKKVYKVTGGLHGVGVHVVNALSSQLIAIVKKGETVYYEEFQKGIPS 60

Query: 191 SPLEKKE---------------KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
             L+  +               K+    GT I F  D +IFGD   +    LL   +  A
Sbjct: 61  GVLKNVKREDYRKIPELNAIEIKMSEPTGTLIAFNADKEIFGDS-KYSYDTLLSRMRDLA 119

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+ +V       +         + E   + GGL  +++   E  S ++ +I     E+ 
Sbjct: 120 FLNPKVTIEIEDRRS-------GKSEILSYKGGLTEFVKYLGEGYSHVNKDIIYNSEERD 172

Query: 296 GTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA 354
            +    +E+A  +    +  + S+ N I T EGGTH +G R  L+R I+ YA+     + 
Sbjct: 173 DSQ---IEYAFQYTTNTSEILESFVNNISTIEGGTHATGFRSGLSRAIQDYAKSKNLIKG 229

Query: 355 ISI-ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
           +     +D+    V ++ V +REP+F GQTK+KL + + + TV++ + +    Y+   P 
Sbjct: 230 VESITGEDVREGLVAVIHVRMREPQFEGQTKSKLGNSEMRGTVQSVVENHMKQYMEGYPN 289

Query: 414 EATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
            A  +++ V+  +E R   RK RE V RK+A+    LPGKL+DCS +    TE+++VEGD
Sbjct: 290 IAEIIVKRVLAAAEAREASRKARELVRRKSALEGGGLPGKLSDCSSSDPEKTEIYLVEGD 349

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           SAGGSAKQARNR  QAVLPLRGKILNV  A   K  +NQ I DL+ A+G   +     + 
Sbjct: 350 SAGGSAKQARNRDFQAVLPLRGKILNVEKANDFKALSNQVIRDLITAMGTNVKEDLDIKK 409

Query: 533 LRYEKVIIMTDADVDGAHIASLL 555
           LRY K+I+MTDADVDG+HI +LL
Sbjct: 410 LRYGKIIMMTDADVDGSHIRTLL 432


>gi|4996788|dbj|BAA78439.1| subunit B protein of DNA gyrase [bacterium rJ16]
          Length = 323

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 107/328 (32%), Positives = 166/328 (50%), Gaps = 33/328 (10%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPN 126
           D   LHHL  EV+DN++DE +AG+ + I V++  +  ++V DNGRGIP          P 
Sbjct: 4   DGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHSDNSISVTDNGRGIPTGVKMDDKHEPK 63

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV R+  +   +FSR
Sbjct: 64  RSASEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSSMLRLTVRREGKVHVLEFSR 123

Query: 187 G------------IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           G            + +SP++      +KRGT + F PD +IF + + F    L K  +  
Sbjct: 124 GFVQNRILETVDGVEISPMQVLGDT-DKRGTEVHFLPDTEIFKENSDFHYEILAKRLREL 182

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V+     ++   E         F   GG++ +++   + ++++    F    E+
Sbjct: 183 SFLNNGVRIRLKDERSGKEDD-------FSGAGGVRGFVEFINKGKTVLHPNSFYASGER 235

Query: 295 KGTH-------RGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYA 346
                         VE A+ W     E    + N I   +GGTH +GLR A+TR I KY 
Sbjct: 236 PAETYGGIAGTHIGVEVAMQWNSGYSEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYI 295

Query: 347 ELTQ--NKRAISIISDDLMISAVGILSV 372
           +      K  + +  DD+      +LSV
Sbjct: 296 DENDFAKKAKVEVTGDDMREGLCCVLSV 323


>gi|307704602|ref|ZP_07641505.1| DNA gyrase subunit B [Streptococcus mitis SK597]
 gi|307621847|gb|EFO00881.1| DNA gyrase subunit B [Streptococcus mitis SK597]
          Length = 193

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 90/185 (48%), Positives = 126/185 (68%), Gaps = 2/185 (1%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I+V 
Sbjct: 10  AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVF 69

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF    Y++SGGLHGVG S
Sbjct: 70  IEPDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 128

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L V V +   I  Q++ RG  ++ LE      ++ GT + F PDP+IF +  
Sbjct: 129 VVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFTPDPEIFTETT 187

Query: 221 GFDAA 225
            FD  
Sbjct: 188 TFDFD 192


>gi|328349735|emb|CBY89175.1| GyrB protein [Flavobacterium sp. R-38313]
          Length = 414

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 160/412 (38%), Positives = 230/412 (55%), Gaps = 11/412 (2%)

Query: 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA-RQ 176
           V  H K    S LE+++T + AGGKFD  +Y++SGGLHGVG+SVVNALS+ L  TV    
Sbjct: 1   VGIHKK-EGVSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSD 59

Query: 177 NTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAY 236
             ++ Q++ +G  L P+++  +    RGT +TF PD  IF     +    L    +  +Y
Sbjct: 60  GKVYEQEYEKGKALYPVKQIGETTK-RGTIVTFYPDQSIFTQTIDYSYDTLSARMRELSY 118

Query: 237 LSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG 296
           L+  +   ++  +E  +K G    E F+   GLK Y++    NR  I + + +   EK  
Sbjct: 119 LNKGITITFTDKRE-LDKEGNFVSEIFHSTEGLKEYIRYLDGNREPIIAHVISMDNEK-- 175

Query: 297 THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KR 353
                VE A+ +       I SY N I T EGGTH  G R  LTR +KKYA+ +    K 
Sbjct: 176 -GEIPVEVALIYNTSYSENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGMLDKL 234

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
              I  DD       I+SV + EP+F GQTKTKL + +    V  A+ D  + YL +NP 
Sbjct: 235 KFDISGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVVSPVSQAVGDMIEAYLEENPN 294

Query: 414 EATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
           +A  +++ VI  ++ R   +K RE+  RKT +    LPGKL+DCS+      E+++VEGD
Sbjct: 295 DARIIVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGD 354

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           SAGG+AKQ R+R+ QA+LPLRGKILNV  A   K+  N++I ++  ALG   
Sbjct: 355 SAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFENEEIRNIFTALGVTI 406


>gi|190148816|gb|ACE63383.1| DNA gyrase B subunit [Thermobifida alba]
          Length = 404

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 140/410 (34%), Positives = 218/410 (53%), Gaps = 10/410 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  L V + +   +++Q++    P++ L K  +  ++ GT+ITF
Sbjct: 1   VSGGLHGVGVSVVNALSTRLEVEIRKDGYVWTQRYEMTHPVTDLIK-GEPTDETGTQITF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
             D  IF     ++   L +  Q  A+L+  +      ++        P  + +++ GGL
Sbjct: 60  WADDSIFETTT-YNFETLSRRLQEMAFLNKGLSITIRDER-PEFVGDSPVTQTYHYEGGL 117

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
             +++     +    S I   +    G      E A+ W +     + ++ NTI T EGG
Sbjct: 118 ADFVRHINATKEPAHSTIIAFEDSGDGI---AAEIAMQWNQSYTSSVHTFANTINTAEGG 174

Query: 329 THESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           THE G R ALT  + +YA   +    +  ++  DD+      I+SV + +P+F GQTKTK
Sbjct: 175 THEEGFRAALTSIVNRYARDQKLLRDKDDNLTGDDVREGLTAIVSVKLTDPQFEGQTKTK 234

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIR 445
           L + +A+  ++    +    +  +NP EA  ++ +           R+ +    RKT + 
Sbjct: 235 LGNTEAKSFIQKVCHEHLRDWFDRNPGEAKDIVTKASQAARARIAARQARELTRRKTLLE 294

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC        E++IVEGDSAGGSAK  R+   QA+LP+RGKILNV  A  +
Sbjct: 295 STSLPGKLADCQSTDPERCEVYIVEGDSAGGSAKGGRDPHYQAILPIRGKILNVEKARID 354

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLL 555
           +I  N ++  ++ ALG      +  E LRY K+I+MTDADVDG+HI +LL
Sbjct: 355 RILKNNEVQAIITALGTGVHDDFDIEKLRYHKIILMTDADVDGSHIRTLL 404


>gi|219555777|ref|ZP_03534853.1| DNA gyrase subunit B [Mycobacterium tuberculosis T17]
          Length = 212

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 78/214 (36%), Positives = 116/214 (54%), Gaps = 10/214 (4%)

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
             K  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY 
Sbjct: 3   FCKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRYH 62

Query: 537 KVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEE 595
           K+++M DADVDG HI++LLLT  ++ M  LIE  H+FL  PPL+++        +A+ + 
Sbjct: 63  KIVLMADADVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDR 122

Query: 596 HKQKILEEFKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651
            +  +LE   K GK KI     I R+KGLGEM A +L ET MD + R L +V ++     
Sbjct: 123 ERDGLLEAGLKAGK-KINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD---- 177

Query: 652 LKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
                +  + LMG   D R  FI   A  +  + 
Sbjct: 178 AAAADELFSILMGEDVDARRSFITRNAKDVRFLD 211


>gi|159146568|gb|ABW90728.1| DNA gyrase beta subunit [Vibrio cholerae]
          Length = 404

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 154/414 (37%), Positives = 236/414 (57%), Gaps = 15/414 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G+P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
              + GT + F P  + F +   F    L K  +  ++L+  V    + ++E  +K    
Sbjct: 61  T-ERTGTTVRFWPSAQTFTN-IEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK---- 114

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
             + F + GG++ ++     N++ I  ++F    E++     +VE A+ W +     I  
Sbjct: 115 --DHFMYEGGIQAFVTHLNRNKTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  Y +      K   +   DD       ++SV + 
Sbjct: 171 FTNNIPQRDGGTHLAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ +    +L +NP EA  +   +I+        R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVD 547
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVD
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVD 404


>gi|56409822|emb|CAH65720.1| DNA gyrase [Vibrio aestuarianus]
          Length = 421

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 162/430 (37%), Positives = 248/430 (57%), Gaps = 14/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LH GGKFD+++Y++S G+HGVG+SVVNALS+++ +T+ R+  IF Q +  G+P 
Sbjct: 1   EVIMTVLHGGGKFDDNSYKVSLGVHGVGVSVVNALSEKVELTIKRKGEIFQQIYHHGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    K     GTRI F P  + F +   F    L K  +   +L+  V   ++ ++E
Sbjct: 61  APLAVIGKTEE-TGTRIRFWPSEETFTN-IEFHYEILAKRLRELFFLNSGVWIKFTDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + + F F GG++ +++    N++    +I      ++     TVE A+ W +
Sbjct: 119 ------EDKSDHFMFEGGIRAFVEHLNRNKTPXHQKIXYFDXTRE-EDGITVEVAMQWND 171

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR +  + +      K   +   DD      
Sbjct: 172 GFQEGVYCFTNNIPQRDGGTHLAGFRGALTRTLNNFMDKEGYSKKAQAATSGDDAREGLT 231

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +L++NP EA  +   +I+   
Sbjct: 232 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMSEKLSEFLIENPTEAKIVCGKIIDAAR 291

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR N
Sbjct: 292 AREAARKARDMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKN 351

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDAD
Sbjct: 352 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDAD 411

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 412 VDGSHIRTLL 421


>gi|2196806|gb|AAB80820.1| DNA gyrase beta-subunit [Shewanella putrefaciens]
          Length = 419

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 152/430 (35%), Positives = 237/430 (55%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T L A  KF++++Y++SGG HGVG+SVVNALS +L +T+ R   ++ Q ++ G+P 
Sbjct: 1   EVIMTVLMALKKFEDNSYDVSGGWHGVGVSVVNALSKKLQMTIRRAGKVYEQFYTHGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+ +        GT I F P    F +   F    L K  +  ++L+  V      +++
Sbjct: 61  APIREIGDATK-TGTEIRFWPSENTFSN-IEFHFEILAKRVRELSFLNSGVGIRLIDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + E F + GG+  ++     N++ I+ ++     E+      TVE A+ W +
Sbjct: 119 N-------KNELFKYEGGISAFVDYLNRNKTPINKDVSHFIQERDD--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                I  + N I   +GGTH  G R ALTR +  Y E      K   S   DD      
Sbjct: 170 GYQENIFCFTNNIPQRDGGTHLVGFRTALTRNLNSYMENEGYNKKGKTSATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +  + YL++NP +A  ++  +++   
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEKLNDYLLENPADAKLIVGKIVDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +E++IVEGD AGGSAKQ RNR N
Sbjct: 290 AREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDFAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+  +Q++  L+ ALGC   R +Y  +  RY+ + +MTDA 
Sbjct: 350 QAILPLKGKILNVEKARFDKMLFSQEVATLITALGCGIGRDEYNPDKTRYQNIFMMTDAY 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHILTLL 419


>gi|21238925|dbj|BAB96568.1| DNA gyrase subunit B [Bogoriella caseolytica]
          Length = 461

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 161/464 (34%), Positives = 233/464 (50%), Gaps = 30/464 (6%)

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G + VVDNGRGIPV+  P    K  +E++LT LHAGGKF    Y +SGGLHGVG+SVV
Sbjct: 2   DDGGIRVVDNGRGIPVDVVP-SEGKPAVEVVLTVLHAGGKFGGGGYSVSGGLHGVGVSVV 60

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  LHV V R   ++S  F  G+P  PL ++ +     GT +TF      F     +
Sbjct: 61  NALSSRLHVEVKRDGFVWSMDFVDGVPTGPL-RQGEATEDTGTTVTFWASENTFET-TDY 118

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK--------------------YGIPEKEE 262
               L    Q  A+L+  +K   + ++                              +  
Sbjct: 119 SFETLRSRFQQMAFLNKGLKLVLTDERAGVTDVGDEITGEAGESAEGVDLTPRTGHREVT 178

Query: 263 FYFPGGLKTYLQTKLENR--SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
           + +  GL+ Y+      +    +  EI T + E     + + E A+ W       + SY 
Sbjct: 179 YKYDNGLRDYVAHLNSAKRSEPVHPEIITLEAE-DTDRQLSAEIALQWTGAFSESVHSYA 237

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           NTI T EGGTHE G R ALT  + KYA       +R  ++  +D+      ++SV + EP
Sbjct: 238 NTISTTEGGTHEEGFRSALTSLLNKYARDKGFLKERDDNLTGEDIREGLTAVISVKLGEP 297

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F GQTKTKL + +A+  V+  L      +L  +P EA  +     + +  RL  RK RE
Sbjct: 298 QFEGQTKTKLGNTEARTFVQTQLYSHLGDWLDAHPGEAKDIFRKGQQAAAARLAARKARE 357

Query: 438 VNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
             R+ + +    +PGKL DCS      +E+F+VEGDSAGGSA + R+   QA+LPLRGKI
Sbjct: 358 ATRRKSLLESASMPGKLKDCSTRDPRRSEIFLVEGDSAGGSAVRGRDPETQAILPLRGKI 417

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           LNV  A  ++   NQ+I  L+ A G     ++    LRY K+++
Sbjct: 418 LNVEKARLDRALGNQEIQALITAFGTGIGEEFDITKLRYHKIVL 461


>gi|110264875|gb|ABG57013.1| DNA gyrase beta subunit [Photobacterium leiognathi]
 gi|110264877|gb|ABG57014.1| DNA gyrase beta subunit [Photobacterium leiognathi]
          Length = 403

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 152/413 (36%), Positives = 238/413 (57%), Gaps = 15/413 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I  Q +  G+P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIKRGGHIHQQVYCHGVPDAPLAVIGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             ++ GTRI F P  + F +   F    L K  +  ++L+  V    + ++E        
Sbjct: 61  T-DETGTRIRFWPSEETFTN-IEFQYEILAKRLRELSFLNSGVSIKLNDERE------EG 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F + GG++ +++    N++ I  ++F   +E+      +VE A+ W +     I  
Sbjct: 113 KHDHFMYEGGIQAFVEHLNRNKTPIHPKVFHFDSERDD--GISVEVAMQWNDGFQESIFC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV + 
Sbjct: 171 FTNNIPQRDGGTHLAGFRGALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVISVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ +    +L++NP +A  +   +I+ S      R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKAAVESAMNEKLAEFLLENPADAKTVCTKIIDASRAREAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADV 546
           KILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDADV
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDADV 403


>gi|94541036|gb|ABF31188.1| DNA gyrase subunit B [Leptospira weilii serovar Topaz]
          Length = 158

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 85/158 (53%), Positives = 115/158 (72%), Gaps = 1/158 (0%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
           +Y+A  I+ILEGLE VR RPGMYIG  DE  LH +  EV+DN++DE +AG+   I +S+ 
Sbjct: 2   SYNAGQIKILEGLEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEIRISIL 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            N  + V DNGRGIPV+ HP     ST+E+++T LHAGGKF+N  Y++SGGLHGVG+SVV
Sbjct: 62  PNNIIEVKDNGRGIPVDIHP-DKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVV 120

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           NALS+ L V V ++  I++QK+ +GIP+SP+E K    
Sbjct: 121 NALSEYLEVEVHQKGKIYTQKYEKGIPVSPVEIKGDSS 158


>gi|29652795|gb|AAO87367.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652859|gb|AAO87399.1| DNA gyrase B [Listeria monocytogenes]
          Length = 184

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 87/186 (46%), Positives = 117/186 (62%), Gaps = 2/186 (1%)

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I  
Sbjct: 1   PGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILA 60

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ M  L++ 
Sbjct: 61  NEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDA 120

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
            ++++  PPL++I  G +  Y + +   +  L      G  K  I R+KGLGEM   QL 
Sbjct: 121 GYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYKGLGEMNPEQLW 178

Query: 630 ETAMDA 635
           +T M+ 
Sbjct: 179 DTTMNP 184


>gi|27530062|dbj|BAC53886.1| DNA gyrase B subunit [Legionella pneumophila subsp. fraseri]
          Length = 279

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 104/290 (35%), Positives = 164/290 (56%), Gaps = 16/290 (5%)

Query: 81  VIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140
           V+DN++DE +AGY   I V++  +  +TV D+GRGIPV+ H K   KS  E+I+T LHAG
Sbjct: 1   VVDNSIDESLAGYCKEIFVTIHSDESITVKDDGRGIPVDIH-KEEGKSAAEVIMTVLHAG 59

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD+++Y++SGGLHGVG+SVVNALS+ELH+ V R   ++ Q +  G+P +P+ +  +  
Sbjct: 60  GKFDDNSYKVSGGLHGVGVSVVNALSEELHLLVRRHGKVYEQHYRHGVPEAPIAETGEA- 118

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
           N  GT+I F+P  + F +   F    L K  +  +YL+  V      ++         +K
Sbjct: 119 NSTGTQIWFKPSAETFSN-IEFHYDILAKRLRELSYLNSGVCIHLFDER-------TQKK 170

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
           + F++ GG+K +++   +N++ +   +F+  +EK G     +E A+ W +     I  + 
Sbjct: 171 DTFHYEGGIKAFVEHLNKNKTPVHPVVFSMTSEKDGI---VIELAMQWNDGYQETIFCFT 227

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
           N I   +GGTH +G R ALTR +  Y E      K  +S   DD      
Sbjct: 228 NNIPQRDGGTHMAGFRAALTRTLNNYIENEGYAKKAKVSPTGDDAREGLT 277


>gi|146320607|ref|YP_001200318.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Streptococcus suis 98HAH33]
 gi|145691413|gb|ABP91918.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Streptococcus suis 98HAH33]
          Length = 178

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 75/154 (48%), Positives = 105/154 (68%), Gaps = 2/154 (1%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHH+  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGNGLHHMVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G L+V D GRG+PV  H     K T+E+I T LHAGGKF    Y+ SGGLHGVG SV
Sbjct: 69  NKDGSLSVSDRGRGMPVGMH--ATGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK 195
           VNALS  L V + R   ++ Q+F +G   S   +
Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFEQGWKASHDPR 160


>gi|309807642|ref|ZP_07701584.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus iners LactinV 01V1-a]
 gi|308169108|gb|EFO71184.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus iners LactinV 01V1-a]
          Length = 158

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 76/150 (50%), Positives = 99/150 (66%), Gaps = 2/150 (1%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
            + ++ YD SSI+IL GLE VR RPGMYIG TD + L+HL  E++DN++DE +AGY   I
Sbjct: 2   TNLNNTYDDSSIQILHGLEAVRKRPGMYIGSTDRQGLNHLVYEILDNSVDEAMAGYGKEI 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
            V++  +  ++V D GRG+P   H       T+E+ILT LHAGGKF    Y+ SGGLHGV
Sbjct: 62  NVTIHPDNSVSVQDFGRGMPTGMH--ASGLPTIEVILTVLHAGGKFTEKNYQTSGGLHGV 119

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRG 187
           G SVVNALS+ L V V R    F ++F  G
Sbjct: 120 GSSVVNALSEWLKVRVVRDGQAFEEEFVDG 149


>gi|42541267|gb|AAS19513.1| DNA gyrase subunit B [Photobacterium phosphoreum]
          Length = 405

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 152/414 (36%), Positives = 244/414 (58%), Gaps = 14/414 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I+ Q +  G+P +PL +   
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRNGHIYQQTYCHGVPQAPLAEVGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GTR+ F P  + F +   F    L K  +  ++L+  +      ++E        
Sbjct: 61  -SDKTGTRLRFWPSEETFTNNLEFHYEILAKRLRELSFLNSGISIRLIDERE------EG 113

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +++ F + GG++ +++    N++ I  ++F   +E++     TVE A+ W +     +  
Sbjct: 114 KQDHFTYEGGIRAFVEHLNRNKTPIHQKVFHFDSERED--GITVEVAMQWNDGFQEGVYC 171

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD     + ++SV + 
Sbjct: 172 FTNNIPQRDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLIAVVSVKVP 231

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ + F  +L+++P +A  +   +I+ S      R+ 
Sbjct: 232 DPKFSSQTKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKA 291

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 292 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 351

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVD 547
           KILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDADVD
Sbjct: 352 KILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDADVD 405


>gi|291535201|emb|CBL08313.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Roseburia intestinalis M50/1]
 gi|291539733|emb|CBL12844.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Roseburia intestinalis XB6B4]
          Length = 190

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 84/156 (53%), Positives = 105/156 (67%), Gaps = 2/156 (1%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + +  YD SSI +LEGLE VR RPGMYIG    K L+HL  E++DNA+DE +AG  + I 
Sbjct: 2   AKTGGYDESSISVLEGLEAVRKRPGMYIGSVSRKGLNHLIYEIVDNAVDEHLAGACDTIR 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158
           V+L+ +G  TV DNGRG+PV  H K    S   I+ TTLHAGGKFD+S Y+ SGGLHGVG
Sbjct: 62  VTLEADGSCTVEDNGRGVPVGMHAK--GVSAARIVYTTLHAGGKFDDSAYKTSGGLHGVG 119

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
            SVVNALS  + V ++R   I    + RGIP+  LE
Sbjct: 120 SSVVNALSTHMDVWISRDGYIHHDGYERGIPVVELE 155


>gi|198042710|gb|ACH81180.1| GyrB [Vibrio sp. UST010723-002]
          Length = 407

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 151/417 (36%), Positives = 233/417 (55%), Gaps = 15/417 (3%)

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +  G P
Sbjct: 1   AEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGQIHTQTYHHGEP 60

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            +PL    +   + GT I F P  + F +   F    L K  +  ++L+  V      ++
Sbjct: 61  QAPLSVIGET-EQTGTEIRFWPSEETFSN-TEFHYDILAKRLRDLSFLNSGVSIKLRDER 118

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
           E        +++ F + GG++ ++     N++ I  ++F    E++      VE A+ W 
Sbjct: 119 E------EDKQDHFMYEGGIQAFVDHLNTNKTPIIEKVFHFNAERED--GIAVEVAMQWN 170

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISA 366
           +     I  + N I   +GGTH +G R ALTR +  + +      K   +   DD     
Sbjct: 171 DGYQENIFCFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGL 230

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ER 425
             ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L+++P EA  +   +I   
Sbjct: 231 TAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQAMGEKLSEFLIEHPAEAKTVCTKIIDAA 290

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
                 R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR 
Sbjct: 291 RARDAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRK 350

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIM 541
           NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIM
Sbjct: 351 NQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIM 407


>gi|42541279|gb|AAS19519.1| DNA gyrase subunit B [Photobacterium leiognathi]
 gi|42541281|gb|AAS19520.1| DNA gyrase subunit B [Photobacterium leiognathi]
 gi|42541285|gb|AAS19522.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|42541287|gb|AAS19523.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|110264867|gb|ABG57009.1| DNA gyrase beta subunit [Photobacterium leiognathi]
 gi|110264869|gb|ABG57010.1| DNA gyrase beta subunit [Photobacterium leiognathi]
          Length = 403

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 152/413 (36%), Positives = 238/413 (57%), Gaps = 15/413 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I  Q +  G+P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIKRGGHIHQQVYRHGVPDAPLAVIGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             ++ GTRI F P  + F +   F    L K  +  ++L+  V    + ++E        
Sbjct: 61  T-DETGTRIRFWPSEETFTN-IEFQYEILAKRLRELSFLNSGVSIKLNDERE------EG 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F + GG++ +++    N++ I  ++F   +E+      +VE A+ W +     I  
Sbjct: 113 KHDHFMYEGGIQAFVEHLNRNKTPIHPKVFHFDSERDD--GISVEVAMQWNDGFQESIFC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV + 
Sbjct: 171 FTNNIPQRDGGTHLAGFRGALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVISVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ +    +L++NP +A  +   +I+ S      R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKAAVESAMNEKLAEFLLENPADAKTVCTKIIDASRAREAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADV 546
           KILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDADV
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDADV 403


>gi|19909709|dbj|BAB87050.1| DNA gyrase subunit B [Ralstonia sp. E2]
          Length = 310

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 104/320 (32%), Positives = 161/320 (50%), Gaps = 33/320 (10%)

Query: 72  KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKS 128
             LHHL  EV+DN++DE +AGY   I+V++  +  +++VDNGRGIP +        P +S
Sbjct: 2   TGLHHLVFEVLDNSIDEALAGYCTEIQVTIHTDNSISIVDNGRGIPPDVKFDDKHEPKRS 61

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
             EI +T LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV R   +   +F++G 
Sbjct: 62  AAEIAMTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKWLRLTVRRDGKVHLLEFAQGA 121

Query: 189 PLSP----------------LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQ 232
             +                   K     +KRGT + F  D  IF +   F    L K  +
Sbjct: 122 VQNRLVESATGTDGQPVEVSPMKVTGATDKRGTEVHFLADEAIFTN-VEFHYEVLSKRIR 180

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             ++L+  V    +  +         ++E+F F GG+K +++     ++ +   IF    
Sbjct: 181 ELSFLNNGVHIRLTDQR-------TGKEEDFAFSGGVKGFVEYINRAKTTLHPTIFYANA 233

Query: 293 EKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ- 350
           EK G     VE A+ W +    ++  + N I   +GGTH +GLR A+TR I KY E  + 
Sbjct: 234 EKDGI---AVEVAMQWNDGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEENEI 290

Query: 351 -NKRAISIISDDLMISAVGI 369
             K  +    DD+      +
Sbjct: 291 AKKAKVETTGDDMREGLACV 310


>gi|148470266|gb|ABQ66080.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 160/428 (37%), Positives = 226/428 (52%), Gaps = 13/428 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFDN+TY++SGGLHGVG+SVVNALS+ L + + ++   F Q + +GIP 
Sbjct: 1   EVIMTVLHAGGKFDNNTYKVSGGLHGVGVSVVNALSETLFLDIDQKGNHFRQIYHKGIPE 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           SPL           T I F PD  I      F    L    +   YL+  +         
Sbjct: 61  SPLAITGTSETTG-TSIRFYPDLTIMET-DAFSFDVLAHRFRELGYLNPALTII------ 112

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
              +     +E F+  GG++++L    EN+  I   +   K+   G+    V +      
Sbjct: 113 -LREEETLREEIFHDEGGIRSFLLFVNENKRTIHDPLSFRKSLDNGST-FEVSFQYQDTT 170

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
           +   + SY N I T EGGTH  G R ALTR + ++ +     +   +  +D+      I+
Sbjct: 171 DAETLLSYVNNIPTREGGTHVRGFRAALTRVVNRFIKEKNLNKGEEVKGEDIREGLSAII 230

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           S+ I  P+F GQTK KL S      +E  L +  +    +    A  + +  I  ++ R 
Sbjct: 231 SIKIPNPQFEGQTKAKLGSSWVSGAMETFLAESLEDAFEKQGAVARAIADKAILSAQARE 290

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK RE   RK  +    LPGKLADC +N    +EL IVEGDSAGGSAKQ R+R  QA+
Sbjct: 291 AARKARELTKRKNVLEGSNLPGKLADCQENDPAKSELCIVEGDSAGGSAKQGRDRRFQAI 350

Query: 490 LPLRGKILNVASAG-SEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVD 547
           LPL+GKILNV  +   EK   + ++  L+ A+GC   ++      LRY K+IIMTDADVD
Sbjct: 351 LPLKGKILNVEKSKGVEKFITHDEVRALITAVGCGLGAEEFSLKNLRYHKIIIMTDADVD 410

Query: 548 GAHIASLL 555
           G+HI +LL
Sbjct: 411 GSHIRTLL 418


>gi|4996816|dbj|BAA78453.1| subunit B protein of DNA gyrase [bacterium rM16]
          Length = 277

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 100/283 (35%), Positives = 152/283 (53%), Gaps = 12/283 (4%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFP-NKS 128
           D   LHH+  EV+DNA+DE +AGY + I V +  +  ++V DNGRGIP   H      +S
Sbjct: 1   DGTGLHHMVFEVVDNAIDEALAGYCDDIVVMIHSDSSISVTDNGRGIPTAIHKDDEFGRS 60

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
             EI++T LHAGGKFD+++Y++SGGLHGVG+S VNALS+ L +T+ RQ      +F RG 
Sbjct: 61  AAEIVMTELHAGGKFDHNSYKVSGGLHGVGVSCVNALSEWLRLTIWRQGETHEMEFRRGE 120

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
            + PL          GTR+ F  D +IF     +    L K  +  ++L+  VK     +
Sbjct: 121 RVQPLGITGPT-ELHGTRVQFLADAEIFEK-IEYHYEILAKRLRELSFLNNGVKVRLIDE 178

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK-KGTHRGTVEWAIA 307
           ++  E       E F F GG+K +++     ++++   +F+  T    G     V+ A+ 
Sbjct: 179 RQDKE-------ENFAFLGGVKGFVEYINRTKTVLHPNVFSVSTNSVVGDSTIGVDVAMQ 231

Query: 308 WCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
           W +     +  + N I   +GGTH +GLR A+TR + KY    
Sbjct: 232 WNDSYTETVLCFTNNIPQRDGGTHLTGLRAAMTRVLNKYITDN 274


>gi|190148814|gb|ACE63382.1| DNA gyrase B subunit [Thermobifida cellulosilytica TB100]
          Length = 407

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 142/413 (34%), Positives = 221/413 (53%), Gaps = 10/413 (2%)

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
           +E+I+T LHAGGKFD+ +Y +SGGLHGVG+SVVNALS  L V V R   +++Q++    P
Sbjct: 1   IEVIMTVLHAGGKFDSKSYAVSGGLHGVGVSVVNALSTRLEVEVRRDGYLWTQRYEMTHP 60

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
           ++ L +  +  ++ GT++TF  D  IF     ++   L +  Q  A+L+  +      ++
Sbjct: 61  VTELIR-GEPTDETGTQVTFWADGSIFET-TTYNFETLSRRLQEMAFLNKGLSITIRDER 118

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
                   P  + +++ GGL  +++     +    S I   +    G     VE A+ W 
Sbjct: 119 -PEFVGDSPVTQTYHYEGGLADFVRHLNATKEPAHSSIIAFEDSGDGI---AVEIAMQWN 174

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISA 366
           +     + ++ NTI T EGGTHE G R ALT  + +YA   +    +  ++  DD+    
Sbjct: 175 QSYTSSVHTFANTINTTEGGTHEEGFRAALTSIVNRYARDQKLLRDKDDNLTGDDVREGL 234

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIER 425
             I+SV + +P+F GQTKTKL + +A+  V+    +    +  +NP EA  ++ +     
Sbjct: 235 TAIVSVKLADPQFEGQTKTKLGNTEAKSFVQKVCHEHLRDWFDRNPGEAKDIVTKASRAA 294

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
                 R+ +    RKT +    LPGKLADC        E++IVEGDSAGGSAK  R+  
Sbjct: 295 RARIAARQARELTRRKTLLESTSLPGKLADCQSTDPERCEVYIVEGDSAGGSAKGGRDPH 354

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538
            QA+LP+RGKILNV  A  ++I  N ++  ++ ALG     ++  E LRY KV
Sbjct: 355 YQAILPIRGKILNVEKARIDRILKNNEVQAIITALGTGVHDEFDIEKLRYHKV 407


>gi|15530011|gb|AAL01494.1| gyrase B [bacterium W3 18-1]
          Length = 406

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 152/416 (36%), Positives = 233/416 (56%), Gaps = 16/416 (3%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG+SVVNALS +L +T+ R   ++ Q ++ G+P +P+++      
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSRKLQMTIRRAGKVYEQFYTHGVPDAPIKEIGDATK 60

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             GT I F P    F D   F    L K  +  ++L+  V      +++        + E
Sbjct: 61  -TGTEIRFWPSEDTFSD-VEFHFEILAKRVRELSFLNSGVGIRLIDERDN-------KNE 111

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F + GG+  ++     N++ ++ E+F    E+      TVE A+ W +     I  + N
Sbjct: 112 FFKYEGGISAFVDYLNRNKTPVNKEVFHFMQERDD--GITVEVAMQWNDGYQENIFCFTN 169

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPE 378
            I   +GGTH  G R ALTR +  Y E      K   +   DD       ++SV + +P+
Sbjct: 170 NIPQRDGGTHLVGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVPDPK 229

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQRE 437
           F+ QTK KLVS + +  VE  + +  + YL++NP +A  ++  +++        R+ +  
Sbjct: 230 FSSQTKDKLVSSEVKTAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREM 289

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
             RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKIL
Sbjct: 290 TRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKIL 349

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIA 552
           NV  A  +K+ ++Q++  L+ ALGC   R +Y  +  RY  +IIMTDADVDG+HI 
Sbjct: 350 NVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDGSHIR 405


>gi|42541273|gb|AAS19516.1| DNA gyrase subunit B [Photobacterium iliopiscarium]
          Length = 405

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 153/414 (36%), Positives = 243/414 (58%), Gaps = 14/414 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I+ Q +  G+P +PL +   
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRNGHIYQQTYCNGVPQAPLAEVGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GTR+ F P  + F     F    L K  +  ++L+  +      ++E        
Sbjct: 61  -SDKTGTRLRFWPSEETFTTNLEFHYEILAKRLRELSFLNSGISIRLIDERE------EG 113

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +++ F + GG++ +++    N++ I  ++F   +E++     TVE A+ W +     +  
Sbjct: 114 KQDHFTYEGGIRAFVEHLNRNKTPIHQKVFHFDSERED--GITVEVAMQWNDGFQEGVYC 171

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD     V ++SV + 
Sbjct: 172 FTNNIPQRDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLVAVVSVKVP 231

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ + F  +L+++P +A  +   +I+ S      R+ 
Sbjct: 232 DPKFSSQTKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKA 291

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 292 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 351

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVD 547
           KILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDADVD
Sbjct: 352 KILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDADVD 405


>gi|148470228|gb|ABQ66061.1| gyrase b [uncultured bacterium]
          Length = 417

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 152/420 (36%), Positives = 223/420 (53%), Gaps = 13/420 (3%)

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFDN+TY++SGGLHGVG+SVVNALS+ L + + ++   F Q + +G P SPL 
Sbjct: 4   TVLHAGGKFDNNTYKVSGGLHGVGVSVVNALSETLLLDIDQKGQHFHQVYHKGAPDSPLA 63

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
                 ++ GT I F PD  I      F    L    +  ++L+  +    + ++ + E 
Sbjct: 64  VTG-SSDRTGTAIRFYPDLTIMET-DQFSYDVLAHRFRELSFLNPSLTITLAEEETLRE- 120

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE 314
                   F+  GG++++L    EN+ ++   +F  K  + G     + +      +   
Sbjct: 121 ------SVFHDEGGIRSFLSFVNENKRVLHEPLFFRKVLENGAT-FEISFQYQDTTDAET 173

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFI 374
           + SY N I T EGG+H  G R ALT+ + ++       +   +  +D+      I+S+ I
Sbjct: 174 LLSYVNNIPTREGGSHVRGFRSALTKVVNRFIRDKNLNKGEEVKGEDIREGLSAIVSIKI 233

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
             P+F GQTK KL S      +E  L +  +    +    A  + +  I  ++ R   RK
Sbjct: 234 PNPQFEGQTKAKLGSSWVAGAMETFLSESLEDAFEKQGAIARAIADKAILSAQAREAARK 293

Query: 435 QRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            RE   RK  +    LPGKLADC +N    +EL+IVEGDSAGGSAKQ R+R  QA+LPL+
Sbjct: 294 ARELTKRKNVLEGSNLPGKLADCQENDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLK 353

Query: 494 GKILNVASAG-SEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHI 551
           GKILNV      EK   + ++  L+ A+GC    +      LRY K+IIMTDADVDG+HI
Sbjct: 354 GKILNVEKTKGVEKFITHDEVRALITAVGCGLGDEDFSLKNLRYHKIIIMTDADVDGSHI 413


>gi|301477622|dbj|BAJ12096.1| DNA gyrase subunit beta [Pandoraea pnomenusa]
          Length = 425

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 154/427 (36%), Positives = 232/427 (54%), Gaps = 29/427 (6%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL------------EKKEKVRNKRGTR 206
            S VNALS  L +TV R       +F RG+P +              +      +KRGT 
Sbjct: 11  SSCVNALSSYLKLTVRRDGKKHFMEFHRGVPQNREIEVVDGVETSPLKVLGDT-DKRGTE 69

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F  D  IFG+   F    L K  +  ++L+  V+   +  +   E         F F 
Sbjct: 70  VHFLADETIFGNV-EFHYDILAKRMRELSFLNNGVRIRLTDLRTGKEDD-------FAFG 121

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+K +++   ++++++   +F    E+ G     VE A+ W +     +  + N I   
Sbjct: 122 GGVKGFVEYINKSKTVLHPTVFHVMGERDGI---GVEVAMQWNDSYNETVLCFTNNIPQR 178

Query: 326 EGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +GLR A+TR I KY        K  +    DD+      +LSV + EP+F+ QT
Sbjct: 179 DGGTHLTGLRAAMTRVINKYIVESEMAKKAKVETTGDDMREGLTCVLSVKVPEPKFSSQT 238

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443
           K KLVS + +  VE  +    + +L + P +A  +   ++E +  R   RK RE+ R+  
Sbjct: 239 KDKLVSSEVRAPVEEYVAKALEDFLQETPNDAKIICSKIVEAARARDAARKAREMTRRKG 298

Query: 444 -IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
            +  + LPGKLADC +      E+++VEGDSAGGSAKQ R+R  QA+LPLRGK+LNV  A
Sbjct: 299 VLDGVGLPGKLADCQEKDPALCEIYVVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKA 358

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561
             +K+ +++QI+ L+ ALGC   +  Y  + LRY ++IIMTDADVDGAHI +LLLTFFY+
Sbjct: 359 RFDKLISSEQIVTLITALGCGIGKDDYNIDKLRYHRIIIMTDADVDGAHIRTLLLTFFYR 418

Query: 562 EMYDLIE 568
           ++ +LIE
Sbjct: 419 QVPELIE 425


>gi|213391522|gb|ACJ46502.1| gyrase B subunit [Shewanella sp. BSw10008]
          Length = 419

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 155/417 (37%), Positives = 237/417 (56%), Gaps = 16/417 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKFD+++Y++SGGLHGVG+SVVNALS++L +T+ R   ++ Q ++ G+P +P+++  
Sbjct: 8   HAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLQLTIRRAGKVYEQFYTHGVPDAPIKEIG 67

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
                 GT + F P  + F D   F    L K  +  ++L+  V      +++  +    
Sbjct: 68  DAVK-TGTELRFWPSSQTFTD-VEFHFEILAKRVRELSFLNSGVGIRLVDERDNKD---- 121

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
              E F + GG+  ++     N++ I+ ++F    E+      TVE A+ W +     I 
Sbjct: 122 ---EFFKYEGGISAFVDYLNRNKTPINKDVFHFSQERDD--GITVEVAMQWNDGYQENIF 176

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFI 374
            + N I   +GGTH  G R ALTR +  Y E      K   S   DD       ++SV +
Sbjct: 177 CFTNNIPQRDGGTHLVGFRGALTRNLNNYMEREGFNKKGKTSATGDDAREGLTAVISVKV 236

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRR 433
            +P+F+ QTK KLVS + +  VE  + +  + YL++NP +A  ++  +++        R+
Sbjct: 237 PDPKFSSQTKDKLVSSEVKSAVEQTMGEQLNDYLLENPADAKLIVGKIVDAARAREAARK 296

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            +    RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+
Sbjct: 297 AREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLK 356

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGA 549
           GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  +  RY  +IIMTDADVDGA
Sbjct: 357 GKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKARYHNIIIMTDADVDGA 413


>gi|4996804|dbj|BAA78447.1| subunit B protein of DNA gyrase [bacterium rM9]
          Length = 305

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 98/309 (31%), Positives = 149/309 (48%), Gaps = 29/309 (9%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPN 126
           D   LHHL  EV+DN++DE +AG+ + I V++  +  ++V DNGRGIP          P 
Sbjct: 4   DGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHTDNSISVTDNGRGIPTGVKMDDKHEPK 63

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV R   +   +F++
Sbjct: 64  RSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKWLRLTVRRDGKVHQIEFAK 123

Query: 187 GIPLSP-----------LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           G   +              K      KRGT + F PD +IF     F    L K  +  +
Sbjct: 124 GFVQNRLLETVDGFEVSPMKVTGATEKRGTEVHFLPDTEIFQQNHEFHYEILAKRLRELS 183

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V+     ++   E         F   GG+K +++     + ++    F     + 
Sbjct: 184 FLNNGVRIRLKDERSGKEDD-------FSGAGGVKGFVEFINGTKKVLHPTAFHATGTRP 236

Query: 296 GT-------HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
                        VE A+ W +    ++  + N I   +GGTH +GLR A+TR I KY E
Sbjct: 237 AESYGGIPGTEIGVEVAMQWNDGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIE 296

Query: 348 LTQNKRAIS 356
             +  +   
Sbjct: 297 SNELAKKAK 305


>gi|4996786|dbj|BAA78438.1| subunit B protein of DNA gyrase [bacterium rJ13]
          Length = 323

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 107/327 (32%), Positives = 158/327 (48%), Gaps = 31/327 (9%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPN 126
           D   LHHL  EV+DN++DE +AGY + I V++  +G L+V DNGRGIP          P 
Sbjct: 4   DGTGLHHLVFEVVDNSIDEALAGYCDDIAVTIHADGSLSVTDNGRGIPTGVKMDDKHEPK 63

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV R   +   +F+R
Sbjct: 64  RSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKWLRLTVRRDGQVHQIEFAR 123

Query: 187 GIPL-----------SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           G              +   K       RGT + F PD +IFGD   F    L K  +  +
Sbjct: 124 GFVQNRAIEVVDGFETSPMKITGSTEDRGTAVRFLPDVEIFGDNHDFHYETLAKRLRELS 183

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V+     ++   E         F   GG+  +++     + ++    F     + 
Sbjct: 184 FLNNGVRIRLIDERTGKEDD-------FSGAGGVLGFVKFISTGKKVLHPTPFHASGTRP 236

Query: 296 GT-------HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
                        VE A+ W +    ++  + N I   +GGTH +GLR A+TR I KY  
Sbjct: 237 AETYGGIPGTEIGVEVAMQWNDGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIA 296

Query: 348 LTQ--NKRAISIISDDLMISAVGILSV 372
             +   K  + +  DD+      +LSV
Sbjct: 297 DNEFAKKAKVDVTGDDMREGLCCVLSV 323


>gi|198042692|gb|ACH81171.1| GyrB [Pseudoalteromonas sp. UST050418-013]
          Length = 405

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 151/414 (36%), Positives = 237/414 (57%), Gaps = 16/414 (3%)

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
           I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L +TV R+  +  Q ++ G+P +P
Sbjct: 1   IMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKLTVRREGKLHEQFYTMGVPDAP 60

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
           L          GT + F P  + F +   F    L K  +  ++L+  V    + ++E  
Sbjct: 61  LAVIGD-SETTGTELRFWPSGETFTN-LDFHYEILAKRLRELSFLNSGVSIILNDERE-- 116

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
                 + + F + GG++ +++    N++ I   +F    E++     +VE ++ W +  
Sbjct: 117 ----ENKSDHFKYEGGIQAFVEYLNRNKTPIHKGVFHFTHERE-EDGISVEVSMQWNDAY 171

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYA----ELTQNKRAISIISDDLMISAV 367
              I  + N I   +GGTH +G R ALTR +  Y        + K   +   DD      
Sbjct: 172 QENIYCFTNNIPQRDGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLT 231

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS- 426
            ++SV + +P+F+ QTK KLVS + +  VE A+ + F  +L++NP++A  ++  +I+ S 
Sbjct: 232 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQAMAEKFTEFLLENPVDAKIVVGKIIDASR 291

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR N
Sbjct: 292 AREAARKAREMTRRKGAMDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKN 351

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  E LRY ++I
Sbjct: 352 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPEKLRYHRII 405


>gi|148470288|gb|ABQ66091.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 160/428 (37%), Positives = 228/428 (53%), Gaps = 13/428 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFDN+TY++SGGLHGVG+SVVNALS+ L + + ++   F Q + +GIP 
Sbjct: 1   EVIMTVLHAGGKFDNNTYKVSGGLHGVGVSVVNALSETLFLDIDQKGNHFRQIYHKGIPE 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           SPL           T I F PD  I      F    L    +   YL+  +         
Sbjct: 61  SPLAITGTSETTG-TSIRFYPDLTIMET-DAFSFDVLAHRFRELGYLNPALTII------ 112

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
              +     +E F+  GG++++L    EN+  I   +   K+   G+    V +      
Sbjct: 113 -LREEETLREEIFHDEGGIRSFLLFVNENKRTIHDPLSFRKSLDNGST-FEVSFQYQDTT 170

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
           +   + SY N I T EGGTH  G R ALTR + ++ +     +   +  +D+      I+
Sbjct: 171 DAETLLSYVNNIPTREGGTHVRGFRAALTRVVNRFIKEKNLNKGEEVKGEDIREGLSAII 230

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           S+ I  P+F GQTK KL S      +E  L +  +    +    A  + +  I  ++ R 
Sbjct: 231 SIKIPNPQFEGQTKAKLGSSWVSGAMETFLAESLEDAFEKQGAVARAIADKAILSAQARE 290

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK RE   RK  +    LPGKLADC +N +  +EL+IVEGDSAGGSAKQ R+R  QA+
Sbjct: 291 AARKARELTKRKNVLEGSNLPGKLADCQENDSAKSELYIVEGDSAGGSAKQGRDRRFQAI 350

Query: 490 LPLRGKILNVASAG-SEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVD 547
           LPL+GKILNV  +   EK   + ++  L+ A+GC   ++      LRY K+IIMTDADVD
Sbjct: 351 LPLKGKILNVEKSKGVEKFITHDEVRALITAVGCGLGAEEFSLKNLRYHKIIIMTDADVD 410

Query: 548 GAHIASLL 555
           G+HI +LL
Sbjct: 411 GSHIRTLL 418


>gi|205371907|ref|ZP_03224727.1| DNA gyrase subunit B [Bacillus coahuilensis m4-4]
          Length = 160

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 81/154 (52%), Positives = 106/154 (68%), Gaps = 1/154 (0%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
             Q  +  YD S+I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AG+ +
Sbjct: 5   NEQIQNQAYDESNIQVLEGLEAVRKRPGMYIGSTASKGLHHLVWEIVDNSIDEALAGHCD 64

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V ++ +  +TV DNGRGIPV  H K   +  +E+ILT LHAGGKF    Y++SGGLH
Sbjct: 65  EINVVIEKDNSITVTDNGRGIPVGIHEKM-GRPAVEVILTVLHAGGKFGGGGYKVSGGLH 123

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
           GVG SVVNALS  L V V R   ++ Q++ RG+P
Sbjct: 124 GVGASVVNALSTTLEVHVHRDGKVYHQQYERGVP 157


>gi|119369920|gb|ABL67974.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 420

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 159/432 (36%), Positives = 240/432 (55%), Gaps = 19/432 (4%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALSDELH+T+ R   I  Q +  G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSDELHLTIERHGKIHEQHYRNGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            P++              +            F    L K  +  ++L+  VK     ++ 
Sbjct: 61  EPVKVTGDTTTTG--TKVWFKPSSATFTNIEFHYDILAKRLRELSFLNSGVKIHLHDERS 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   +++EF + GG+K +++    N++ I   +F+    K       VE A+ W +
Sbjct: 119 -------DKRDEFCYEGGIKAFVEHLNRNKTPIIPCVFSFTAAKDNV---AVELALQWND 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R  LTR +  Y E      K  +S   DD      
Sbjct: 169 SFQENVYCFTNNIPQKDGGTHLAGFRAGLTRTLNTYIEKEGLAKKEKVSTTGDDAREGLT 228

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERS 426
            ILSV + +P+F+ QTK KLVS + + +VE+ + + F+ +L++NP  +  ++ +      
Sbjct: 229 AILSVKVADPKFSSQTKDKLVSSEVKSSVESLVAEKFNDFLLENPSVSKVIVGKMFEAAR 288

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                RR +  V RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ R+R  
Sbjct: 289 ARDAARRAREMVRRKGAMDIAGLPGKLADCQEKDPAMSEIYIVEGDSAGGSAKQGRDRKF 348

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIM--TD 543
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC      Y  + +RY ++IIM  TD
Sbjct: 349 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGHEDYDPDKVRYHRIIIMTDTD 408

Query: 544 ADVDGAHIASLL 555
           ADVDG+HI +LL
Sbjct: 409 ADVDGSHIRTLL 420


>gi|33187321|gb|AAP97523.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni]
          Length = 397

 Score =  237 bits (604), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 159/411 (38%), Positives = 225/411 (54%), Gaps = 18/411 (4%)

Query: 136 TLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK 195
            LHAGGKFD  TY++SGGLHGVG+SVVNALS +L  TV R   I+ Q+FS G  +S    
Sbjct: 1   VLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFGV 60

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
             K +   GT I F PD +IF     FD   L K  +  AYL+ ++   +  ++      
Sbjct: 61  IGKSKK-TGTTIEFWPDDQIFEVT-EFDYEILAKRFRELAYLNPKITINFKDNR------ 112

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI 315
            + + E F+F GG+  ++    +  +L  +  F+   E        VE A+ + +   E 
Sbjct: 113 -VGKHESFHFEGGISQFVTDLNKKEALTKAIFFSVDEED-----VNVEVALLYNDTYSEN 166

Query: 316 T-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSV 372
             S+ N I T +GGTHE+G R+ LTR I  Y E      ++   I  +D+    + ++SV
Sbjct: 167 LLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGEDVREGLIAVVSV 226

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
            + EP+F GQTK KL S   +  V  A  +    Y  +NPIEA  ++   +  +  R   
Sbjct: 227 KVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAA 286

Query: 433 RKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           +K RE   +K ++    LPGKLADC       +E+++VEGDSAGGSAKQ R RS QA+LP
Sbjct: 287 KKARELTRKKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILP 346

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           LRGKILNV  A  +KI  ++QI +++ A GC     +    LRY K+IIMT
Sbjct: 347 LRGKILNVEKARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMT 397


>gi|295979569|dbj|BAJ07457.1| DNA gyrase subunit B [Rhodoferax fermentans]
          Length = 325

 Score =  237 bits (604), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 109/330 (33%), Positives = 169/330 (51%), Gaps = 28/330 (8%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPN 126
           D   LHHL  EV+DN++DE +AG+ + I V++  +  ++VVDNGRGIP          P 
Sbjct: 4   DGTGLHHLVFEVVDNSIDESLAGHCDDILVTIHADNSVSVVDNGRGIPTGVKMDDKHEPK 63

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFS- 185
           +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV R   +   +FS 
Sbjct: 64  RSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKMLRLTVRRDGKVHVLEFSK 123

Query: 186 -----------RGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
                       GI +SP++       +RGT + F PD  IF     F    L K  +  
Sbjct: 124 GFVQNRITEVQDGIEVSPMKVIGDT-ERRGTEVHFLPDTDIFQQNNDFHYDVLAKRLREL 182

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V+     ++   E         F    G++ ++    + +++++  IF    ++
Sbjct: 183 SFLNHGVRIRLKDERTGKEDD-------FSGADGVRGFVNFINKGKTILNPNIFHALGDR 235

Query: 295 --KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ- 350
                    VE A+ W      ++  + N I   +GGTH +GLR A+TR I KY + T+ 
Sbjct: 236 QSDQNTNIGVEVAMQWNSGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIDDTEV 295

Query: 351 -NKRAISIISDDLMISAVGILSVFIREPEF 379
             K  + +  DD+      +LSV + EP+F
Sbjct: 296 AKKAKVEVTGDDMREGLTCVLSVKVPEPKF 325


>gi|207093056|ref|ZP_03240843.1| DNA gyrase subunit B [Helicobacter pylori HPKX_438_AG0C1]
          Length = 438

 Score =  237 bits (604), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 144/415 (34%), Positives = 224/415 (53%), Gaps = 14/415 (3%)

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
            + GT I F PD  +      F A  L K  +  AYL+  +K  +  +K          +
Sbjct: 2   KESGTTIEFFPDESVMEVV-EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLQ 53

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCN 320
           E +++  GLK +++   + + L++  I     +++      V  A    + N    S+ N
Sbjct: 54  ETYFYEDGLKQFVKDSAK-KELLTPIISFKSMDEETRTSIEVALAYTD-DYNENTLSFVN 111

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFA 380
            I T EGGTHE+G ++ L++ I +Y +     +    IS+D+    + ++S+ + EP F 
Sbjct: 112 NIKTSEGGTHEAGFKMGLSKAILQYIDNNIKTKESRPISEDIKEGLIAVVSLKMSEPLFE 171

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VN 439
           GQTK+KL S  A+  V   + D    +L +NP EA  +    +  ++ R   +K RE   
Sbjct: 172 GQTKSKLGSSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTR 231

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +K  +    LPGKLADC       +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV
Sbjct: 232 KKDNLSVGTLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNV 291

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
             +   KI  +++I +++ A GC  +  +  E LRY K+IIMTDADVDG+HI +LL+TFF
Sbjct: 292 EKSHLSKILKSEEIKNMITAFGCGIQESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFF 351

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           Y+ +  LIEQ H+++   PL++  +G   +Y  D       L E   HG   ++I
Sbjct: 352 YRYLRPLIEQGHVYIAQAPLYKYKKGKTEIYLKDSVALDHFLIE---HGINSVDI 403


>gi|149191295|ref|ZP_01869550.1| DNA topoisomerase IV subunit B [Vibrio shilonii AK1]
 gi|148834893|gb|EDL51875.1| DNA topoisomerase IV subunit B [Vibrio shilonii AK1]
          Length = 252

 Score =  237 bits (604), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 94/239 (39%), Positives = 136/239 (56%), Gaps = 13/239 (5%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           ++ Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A+ ++V 
Sbjct: 2   TEQYNAGAIEVLNGLEPVRRRPGMY---TDTVRPNHLGQEVIDNSVDEALAGHASKVQVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+    S +E+I   LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EKISGVELIFCKLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + VTV R   ++   F  G  +  L       R  +GT + F PD   F   
Sbjct: 118 VVNALSKRVEVTVRRDGQVYEMAFENGNKVEELTVTGTCGRRNKGTSVHFWPDASYFDSA 177

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
             F   RL+   ++KA L   ++  ++            +  ++++  GLK YL   ++
Sbjct: 178 N-FSVTRLINNLRAKAVLCPGLEITFTDK-------VNNKDYKWFYEDGLKDYLAECVK 228


>gi|56807411|ref|ZP_00365381.1| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), B subunit [Streptococcus pyogenes M49 591]
          Length = 237

 Score =  237 bits (604), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 92/227 (40%), Positives = 129/227 (56%), Gaps = 2/227 (0%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           +     YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++  + DE +AG A+  
Sbjct: 9   EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVCKSNDEAVAGCASHT 68

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157
           +V ++ +  +TVVD+GR IPV+   K   +  +E + T LHAGGKF    Y++SGGLHGV
Sbjct: 69  KVFIEADNSITVVDDGRAIPVDIQAK-TGRPAVETVFTVLHAGGKFRGGGYKVSGGLHGV 127

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS +L V V +   I  Q+F RG  ++ LE            + F PDP+IF 
Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVIGTTDVTGT-TVHFTPDPEIFT 186

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           +   FD + L K  Q  A+L+  +K   +      E+        + 
Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKSSGMEQEEHFHYVRWK 233


>gi|328349713|emb|CBY89164.1| GyrB protein [Flavobacterium sp. R-36523]
          Length = 405

 Score =  237 bits (604), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 158/402 (39%), Positives = 229/402 (56%), Gaps = 10/402 (2%)

Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA-RQNTIFSQKFSR 186
           S LE+++T + AGGKFD  +Y++SGGLHGVG+SVVNALS  L  TV      ++ Q++ R
Sbjct: 1   SALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSKHLRATVHSSDGKVYEQEYER 60

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G  L P+++  +    RGT +TF PDP IF     F    L    +  ++L+  +   ++
Sbjct: 61  GKALYPVKQIGETTK-RGTIVTFYPDPIIFTQTVEFAYDTLSARMRELSFLNKGITITFT 119

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +E  +K G    E F+   GLK Y++    NR  I S + +  +EK       VE A+
Sbjct: 120 DKRE-VDKDGNFVSEIFHSDEGLKEYVRYLDANREPIISHVISMNSEK---GEVPVEVAL 175

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLM 363
            +       I +Y N I T EGGTH  G R  LTR +KKYA+ +    K    I  DD  
Sbjct: 176 IYNTSYTENIFAYVNNINTHEGGTHLQGFRTGLTRALKKYADSSGMLDKLKFEIAGDDFR 235

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                I+SV + EP+F GQTKTKL + +    V  A+ +  ++YL +NP +A  +++ VI
Sbjct: 236 EGLTAIISVKVSEPQFEGQTKTKLGNREVVAPVSQAVSEMIENYLEENPNDARIIVQKVI 295

Query: 424 ERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
             ++ R   +K RE+  RKT +    LPGKL+DCS+      E+++VEGDSAGG+AKQ R
Sbjct: 296 LAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPTKCEVYLVEGDSAGGTAKQGR 355

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           +R+ QA+LPLRGKILNV  A   K+  N++I ++  ALG   
Sbjct: 356 DRAFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTI 397


>gi|183987580|gb|ACC65780.1| topoisomerase II [Pleurotus eryngii var. eryngii]
          Length = 680

 Score =  237 bits (604), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 106/528 (20%), Positives = 207/528 (39%), Gaps = 35/528 (6%)

Query: 170 HVTVARQNTIFSQKFSRGIPLSPLEKKEK-VRNKRGTRITFRPDPKIFGDKAGFDAA--R 226
                     +SQ +++ +      K     RN+  TR+TF+P+   FG           
Sbjct: 7   ETADKVNGKKYSQTWTKNMTQVGKAKITNNSRNEEYTRVTFKPELTRFGMTHIDADTAGL 66

Query: 227 LLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSE 286
           L K     A     VK   + ++    K    ++    +        +      +     
Sbjct: 67  LRKRVYDMAGTVKDVKVYLNDERL---KIKTFKQYVEMYIEAATAGAKENSGGAAQAKPT 123

Query: 287 IFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYA 346
           +   +           E A A  +   +  S+ N+I T +GGTH + +   L++ I  + 
Sbjct: 124 VIYEQIS------PRWEVAFATSDGTFQQVSFANSISTIKGGTHVNYIADQLSKSIIAHI 177

Query: 347 ELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
                 +A ++    +       ++  I  P F  QTK  L     +     AL + F  
Sbjct: 178 AKKN--KAATVKPAQVKNHMWIFVNALIENPTFDSQTKETLTLPAGKFGSRPALSEEFMK 235

Query: 407 YLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTE 465
            + +     + +++ V+  ++ +  ++ ++   +++  +  +       +     A    
Sbjct: 236 KVQK-----SSIIDQVLNWAKFKADQQIKKTDGSKRNRLTGMAKLSDANNAGTKNAGKCT 290

Query: 466 LFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           L + EGDSA   A        R N  V PLRGK+LNV  A  ++I  N++I ++ + +G 
Sbjct: 291 LILTEGDSAKSPAVAGLAVVGRDNFGVFPLRGKLLNVREARHDQIMRNEEIQNIKKIMGL 350

Query: 523 RTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK-HLFLISPPLF 580
           +   +Y     LRY +++IMTD D DG+HI  LL+ F       L++    L     P  
Sbjct: 351 QHNKEYTSVSSLRYGRLMIMTDQDHDGSHIKGLLINFLDHFYPSLLKVPEFLVEFVTPYV 410

Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
           R+T+G +          +  LEE       K     +KGLG    +  +E     +K  +
Sbjct: 411 RVTKGNQRKNFFTIPEYETWLEETPDS--KKWTAKYYKGLGTSSDADAREYFSQMSKHMV 468

Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE--RASFID-DVG 685
               +  +  +L     + +K    KAD+R +++++    +++D ++ 
Sbjct: 469 PFATMEDEERAL--IDLAFSK---KKADDRKEWLRQFKPGTYLDHNID 511


>gi|294960273|gb|ADF49629.1| DNA gyrase subunit B [Shewanella sp. S7-3]
          Length = 405

 Score =  237 bits (604), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 153/416 (36%), Positives = 235/416 (56%), Gaps = 16/416 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKFD+++Y++SGGLHGVG+SVVNALS +L +T+ R+  +  Q ++ G+P  P++   
Sbjct: 1   HAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLQLTIRREGKVHEQFYTHGVPDEPIKVIG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
                 GT I F P  + F D   F    L K  +  ++L+  V      +++       
Sbjct: 61  DATK-TGTEIRFWPSEETFSD-VEFHFEILAKRVRELSFLNSGVGIRLVDERDN------ 112

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
            + E F + GG+  ++     N++ ++ ++F    E++     TVE A+ W +     I 
Sbjct: 113 -KNEFFKYEGGISAFVDYLNRNKTPVNKDVFHFMQERED--GITVEVAMQWNDSYQESIF 169

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFI 374
            + N I   +GGTH +G R ALTR +  Y E      K   +   DD       ++SV +
Sbjct: 170 CFTNNIPQRDGGTHLAGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLTAVISVKV 229

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRR 433
            +P+F+ QTK KLVS + +  VE  + +  + YL++NP +A  ++  +++        R+
Sbjct: 230 PDPKFSSQTKDKLVSSEVKAAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARK 289

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            +    RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+
Sbjct: 290 AREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLK 349

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDG 548
           GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  +  RY  +IIMTDADVDG
Sbjct: 350 GKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDG 405


>gi|19909739|dbj|BAB87065.1| DNA gyrase subunit B [Paracoccus sp. N81106]
          Length = 288

 Score =  237 bits (604), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 94/288 (32%), Positives = 147/288 (51%), Gaps = 15/288 (5%)

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           HH+  EV+DN +DEV+AG+A+ ++V +  +  ++V DNGRGIPV+ H      S  E+I+
Sbjct: 1   HHMVYEVVDNGIDEVLAGHADFVQVKIHADSSVSVRDNGRGIPVDMHA-GEGVSAAEVIM 59

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFD ++Y++SGGLHGVG+SVVNALSD L + + R +     +F RG  +  L 
Sbjct: 60  TQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLELRIWRNDKEHFVRFERGDTVKSLV 119

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGF-----DAARLLKMTQSKAYLSGRVKTCWSCDK 249
                  + GT + F    K       F         L    +  A+L+  V+     ++
Sbjct: 120 VVGDAPGESGTEVRFMASAKTVHPDGTFSNLDYSFKTLENRLRELAFLNSGVRIILEDER 179

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
               +         ++ GG+K +++    +++ +  E      EK G     VE A+ W 
Sbjct: 180 HAEVQKTE-----LFYEGGVKEFVKYLDRSKTAVMPEPIFITGEKGGI---GVEVAMWWN 231

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
           +     +  + N I   +GGTH +G R ALTR I KYA+ +   +   
Sbjct: 232 DSYHETVLPFTNNIPQRDGGTHMAGFRGALTRVIGKYAQDSGIAKKEK 279


>gi|19909711|dbj|BAB87051.1| DNA gyrase subunit B [Cupriavidus necator]
          Length = 310

 Score =  237 bits (604), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 106/316 (33%), Positives = 163/316 (51%), Gaps = 33/316 (10%)

Query: 72  KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIP--VENHPKFP-NKS 128
             LHHL  EV+DN++DE +AGY   I+V++  +  +++VDNGRGIP  V+   K    +S
Sbjct: 2   TGLHHLVFEVLDNSIDEALAGYCTEIQVTIHSDNSISIVDNGRGIPPLVKFDDKHEPKRS 61

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
             EI +T LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV R   +   +F++G 
Sbjct: 62  AAEIAMTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKWLRLTVRRDGQVHLIEFAKGD 121

Query: 189 PLSP----------------LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQ 232
             +                   K     +KRGT + F  D +IF +   F    L K  +
Sbjct: 122 VQNRIIETVPGPDGQPVEVSPMKVIGATDKRGTEVHFLADEEIFTN-VEFHYEILSKRIR 180

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             ++L+  V       +         ++E+F F GG+K +++     ++++   IF   T
Sbjct: 181 ELSFLNNGVHIKLVDQR-------TGKEEDFAFSGGVKGFVEYINRAKTVLHPNIFYANT 233

Query: 293 EKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ- 350
           EK G     VE A+ W +    ++  + N I   +GGTH +GLR A+TR I KY E  + 
Sbjct: 234 EKDGI---GVEVAMQWNDGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEENEV 290

Query: 351 -NKRAISIISDDLMIS 365
             K  +    DD+   
Sbjct: 291 AKKAKVETTGDDMREG 306


>gi|289567887|ref|ZP_06448114.1| gyrase B subunit [Mycobacterium tuberculosis T17]
 gi|289541640|gb|EFD45289.1| gyrase B subunit [Mycobacterium tuberculosis T17]
          Length = 202

 Score =  237 bits (604), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 76/206 (36%), Positives = 113/206 (54%), Gaps = 10/206 (4%)

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY K+++M DA
Sbjct: 1   MFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRYHKIVLMADA 60

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603
           DVDG HI++LLLT  ++ M  LIE  H+FL  PPL+++        +A+ +  +  +LE 
Sbjct: 61  DVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEA 120

Query: 604 FKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
             K GK KI     I R+KGLGEM A +L ET MD + R L +V ++          +  
Sbjct: 121 GLKAGK-KINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELF 175

Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685
           + LMG   D R  FI   A  +  + 
Sbjct: 176 SILMGEDVDARRSFITRNAKDVRFLD 201


>gi|109727202|gb|ABG45895.1| DNA gyrase beta subunit [Photobacterium leiognathi]
 gi|110264879|gb|ABG57015.1| DNA gyrase beta subunit [Photobacterium leiognathi]
 gi|110264883|gb|ABG57017.1| DNA gyrase beta subunit [Photobacterium leiognathi]
 gi|159146584|gb|ABW90736.1| DNA gyrase beta subunit [Photobacterium leiognathi]
          Length = 402

 Score =  237 bits (604), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 151/412 (36%), Positives = 237/412 (57%), Gaps = 15/412 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I  Q +  G+P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIKRGGHIHQQVYRHGVPDAPLAVIGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             ++ GTRI F P  + F +   F    L K  +  ++L+  V    + ++E        
Sbjct: 61  T-DETGTRIRFWPSEETFTN-IEFQYEILAKRLRELSFLNSGVSIKLNDERE------EG 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F + GG++ +++    N++ I  ++F   +E+      +VE A+ W +     I  
Sbjct: 113 KHDHFMYEGGIQAFVEHLNRNKTPIHPKVFHFDSERDD--GISVEVAMQWNDGFQESIFC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV + 
Sbjct: 171 FTNNIPQRDGGTHLAGFRGALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVISVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ +    +L++NP +A  +   +I+ S      R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKAAVESAMNEKLAEFLLENPADAKTVCTKIIDASRAREAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           KILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDAD
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDAD 402


>gi|207093111|ref|ZP_03240898.1| DNA gyrase subunit B [Helicobacter pylori HPKX_438_AG0C1]
          Length = 168

 Score =  237 bits (604), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 87/168 (51%), Positives = 115/168 (68%), Gaps = 3/168 (1%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            NY + SI++L+GLE VR RPGMYIG T+   LHH+  EV+DNA+DE +AG+ + I ++L
Sbjct: 2   QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVGGLHHMVYEVVDNAVDESMAGFCDTINITL 61

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
              G   V DNGRGIPV+ HP         ++LT LHAGGKFDN TY++SGGLHGVG+SV
Sbjct: 62  TEEGSCIVEDNGRGIPVDIHP-TEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRI 207
           VNALS  L +T+ ++  I+ Q+F +GIP S LE   K +   + GT I
Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPTSDLEIIGKTKSAKESGTTI 168


>gi|19909713|dbj|BAB87052.1| DNA gyrase subunit B [Cupriavidus necator]
          Length = 310

 Score =  237 bits (603), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 107/316 (33%), Positives = 164/316 (51%), Gaps = 33/316 (10%)

Query: 72  KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIP--VENHPKFP-NKS 128
             LHHL  EV+DN++DE +AGY   I+V++  +  ++++DNGRGIP  V+   K    +S
Sbjct: 2   TGLHHLVFEVLDNSIDEALAGYCTEIQVTIHSDNSISIIDNGRGIPPLVKFDDKHEPKRS 61

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
             EI +T LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV R   +   +F+RG 
Sbjct: 62  AAEIAMTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKWLRLTVRRDGQVHLIEFARGD 121

Query: 189 PLSP----------------LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQ 232
             +                   K     +KRGT + F  D +IF +   F    L K  +
Sbjct: 122 VQNRLVETVTGPDGEPVEVSPMKVIGATDKRGTEVHFLADEEIFTN-VEFHYEILSKRIR 180

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             ++L+  V       +         ++E+F F GG+K +++    ++S++   IF   T
Sbjct: 181 ELSFLNNGVHIKLVDQR-------TGKEEDFAFSGGVKGFVEYINRSKSVLHPNIFYANT 233

Query: 293 EKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ- 350
           EK G     VE A+ W +    ++  + N I   +GGTH +GLR A+TR I KY E  + 
Sbjct: 234 EKDGI---GVEVAMQWNDGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEENEV 290

Query: 351 -NKRAISIISDDLMIS 365
             K  +    DD+   
Sbjct: 291 AKKAKVETTGDDMREG 306


>gi|29652811|gb|AAO87375.1| DNA gyrase B [Listeria monocytogenes]
          Length = 183

 Score =  237 bits (603), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 85/184 (46%), Positives = 115/184 (62%), Gaps = 2/184 (1%)

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I  N+
Sbjct: 2   KLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANE 61

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ M  L++  +
Sbjct: 62  EIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGY 121

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPL++I  G +  Y + +   +  L      G  K  I R+KGLGEM   QL +T
Sbjct: 122 IYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYKGLGEMNPEQLWDT 179

Query: 632 AMDA 635
            M+ 
Sbjct: 180 TMNP 183


>gi|198042700|gb|ACH81175.1| GyrB [Pseudoalteromonas sp. UST050418-030]
          Length = 404

 Score =  237 bits (603), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 149/413 (36%), Positives = 235/413 (56%), Gaps = 16/413 (3%)

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
           I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L +TV R+  +  Q ++ G+P +P
Sbjct: 1   IMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKLTVRREGKLHEQFYTMGVPDAP 60

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
           L       +  GT + F P  + F     F    L K  +  ++L+  V    + ++E  
Sbjct: 61  LAVIGD-SDTTGTELRFWPSAETFTK-LDFHYDILAKRLRELSFLNSGVSIILNDERE-- 116

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
                 + + F + GG++ +++    N++ I   +F    E+      +VE ++ W +  
Sbjct: 117 ----ENKSDHFKYEGGIQAFVEYINRNKTPIHKGVFHFTHER-VEDGISVEVSMQWNDAY 171

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYA----ELTQNKRAISIISDDLMISAV 367
              I  + N I   +GGTH +G R ALTR +  +        + K   +   DD      
Sbjct: 172 QENIYCFTNNIPQRDGGTHLAGFRSALTRTLNNFMEKEGFNKKAKTTSNATGDDAREGLT 231

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS- 426
            ++SV + +P+F+ QTK KLVS + +  VE A+ + F  +L++NP++A  ++  +I+ S 
Sbjct: 232 AVISVKVPDPKFSSQTKDKLVSSEVKSAVEQAMAEKFTEFLLENPVDAKIVVGKIIDASR 291

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR N
Sbjct: 292 AREAARKAREMTRRKGAMDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKN 351

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  E LRY ++
Sbjct: 352 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPEKLRYHRI 404


>gi|7407142|gb|AAF61927.1| DNA gyrase B [Klebsiella pneumoniae]
          Length = 396

 Score =  237 bits (603), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 152/407 (37%), Positives = 233/407 (57%), Gaps = 16/407 (3%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD+++Y++SGGLHGVG+SVVNALS +L + + R N +  Q +  G+P +PL    +  +K
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDNKVHKQMYEHGVPQAPLAATGET-DK 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT + F P  + F +   F+   L K  +  ++L+  V       ++  E       + 
Sbjct: 60  TGTMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------DH 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N 
Sbjct: 113 FHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNN 169

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F
Sbjct: 170 IPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKF 229

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EV 438
           + QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R   
Sbjct: 230 SSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMT 289

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILN
Sbjct: 290 RRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILN 349

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           V  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDA
Sbjct: 350 VEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDA 396


>gi|183987592|gb|ACC65786.1| topoisomerase II [Pleurotus flabellatus]
          Length = 701

 Score =  237 bits (603), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 106/549 (19%), Positives = 211/549 (38%), Gaps = 43/549 (7%)

Query: 161 VVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFG 217
           + N  S E  +  A       +SQ +++ +      K  K  R +  T++TF+PD   FG
Sbjct: 1   LANIYSHEFTIETADKTNEKKYSQTWTKNMTQVGKAKITKNGRGEEWTKVTFKPDLARFG 60

Query: 218 DKAGFDAA--RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
                      L K     A     VK   + ++    K    ++    +        + 
Sbjct: 61  MTHIDPDTAGLLRKRVYDMAGTVKDVKVYLNDERL---KVKNFKQYVEMYLDSAAADAKE 117

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLR 335
                +   + I   +           E   A  +   +  S+ N+I T +GGTH + + 
Sbjct: 118 NSGGAAQAKASIIYEQIS------PRWEVGFATSDGTFQQVSFANSISTIKGGTHVNYIS 171

Query: 336 VALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
             L + +          +  ++    +       ++  I  P F  QTK  L    ++  
Sbjct: 172 DQLAKNLIAAITRKN--KGATVKPAQIKNHMWIFVNALIENPTFDSQTKETLTLPASKFG 229

Query: 396 VENALRDPFDHYL-----------VQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTA 443
               L + F                +  ++ + +++ V+  ++ +  ++ ++   +++T 
Sbjct: 230 SRPTLSEEFMKKGALPIVLVVLSSYRFLVQKSSIIDQVLNWAKFKADQQIKKTDGSKRTR 289

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVA 500
           +  +       +     A    L + EGDSA   A        R N  V PLRGK+LNV 
Sbjct: 290 LTGMAKLSDANNAGTKHAEKCTLILTEGDSAKSLAVAGLAVVGRDNFGVFPLRGKLLNVR 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQY-REEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
            A  ++I  N++I ++ + +G +   +Y     LRY +++IMTD D DG+HI  LL+ F 
Sbjct: 350 EARHDQIMKNEEIQNIKKIMGLQHNKEYSNVSSLRYGRLMIMTDQDHDGSHIKGLLINFL 409

Query: 560 YQEMYDLIEQK-HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
                 L++    L     P+ R+T+G +          ++ +E        K     +K
Sbjct: 410 DHFYPSLLKIPEFLVEFVTPIVRVTKGNQRKNFFTIPEYEQWIESTPDS--KKWTAKYYK 467

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE-- 676
           GLG    +  +E     +K  +    +  +   L     + +K    KAD+R  ++++  
Sbjct: 468 GLGTSSDADAREYFSKMSKHMIPFATMEDEERPL--IDLAFSK---KKADDRKDWLRQFK 522

Query: 677 RASFID-DV 684
             +++D ++
Sbjct: 523 PGTYLDHNL 531


>gi|29652823|gb|AAO87381.1| DNA gyrase B [Listeria monocytogenes]
          Length = 193

 Score =  237 bits (603), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 88/195 (45%), Positives = 120/195 (61%), Gaps = 2/195 (1%)

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 1   RKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILN 60

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 61  VEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTL 120

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+K
Sbjct: 121 FYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYK 178

Query: 619 GLGEMLASQLKETAM 633
           GLGEM   QL +T M
Sbjct: 179 GLGEMNPEQLWDTTM 193


>gi|110612635|gb|ABG78280.1| GyrB [uncultured bacterium]
          Length = 406

 Score =  237 bits (603), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 152/418 (36%), Positives = 240/418 (57%), Gaps = 17/418 (4%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD+++Y++SGGLHGVGISVVNALS ELH+ + R   ++ Q +  G+PL+PL     V++ 
Sbjct: 1   FDDNSYKVSGGLHGVGISVVNALSAELHLAIRRNGHLYEQDYRDGVPLAPLAITGNVQD- 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT + F+P P  F +   F    L K  +  ++L+  V+     ++         +++ 
Sbjct: 60  TGTEVWFKPSPATFTNIV-FHYDVLAKRLRELSFLNSGVRIHLFDER-------TEKQDT 111

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           F + GG+K +++    N++ I   +F+    +       VE +I W +     +  + N 
Sbjct: 112 FEYVGGIKAFVEHLNRNKTPIIPMVFSVNGVRDNI---GVELSIQWNDSFQENVFCFTNN 168

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R  LTR +  Y E     +        DD+      +LSV + +P+F
Sbjct: 169 IPQRDGGTHLAGFRAGLTRTLNNYIEKEGLAKKAKIVTTGDDIREGLTAVLSVKVPDPKF 228

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REV 438
           + QTK KLVS + +  VE+ + + F+ +L++NP  A  ++  + + +  R   R+    V
Sbjct: 229 SSQTKDKLVSSEVKSAVESLVAEKFNDFLLENPSAAKTIVGKIFDAARARDAARRAREMV 288

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKILN
Sbjct: 289 RRKGALDIAGLPGKLADCQEKDPALSEIYIVEGDSAGGSAKQGRDRKFQAILPLKGKILN 348

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLL 555
           V  A  +K+ ++Q++  L+ ALGC     +Y  + +RY ++IIMTDADVDG+HI +LL
Sbjct: 349 VEKARFDKMLSSQEVATLITALGCGIGPEEYDPDKVRYHRIIIMTDADVDGSHIRTLL 406


>gi|9971299|dbj|BAB12467.1| DNA gyrase B subunit [Marinospirillum minutulum]
          Length = 404

 Score =  236 bits (602), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 152/415 (36%), Positives = 233/415 (56%), Gaps = 16/415 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS++L +T+ R   ++ Q +  G+P +PL       +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLTLTIWRDKQVYEQVYRHGVPQTPLTVIGST-DKSG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   FRP  + F +   F    L K  +  ++L+  VK     ++   E       E F+
Sbjct: 60  TLARFRPSNETFTNI-EFSFDTLAKRLRELSFLNSGVKISLVDERNGRE-------EIFH 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL+ ++     N++ +    +     ++G     VE A+ W +     I  Y N I 
Sbjct: 112 YEGGLRAFVDHLNTNKTTLGKVFYFSHQREEG--GVNVEVAMQWNDGYSENIYCYTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GG H +G R ALTR + +Y E      K  +S   DD       I+SV + +P+F+ 
Sbjct: 170 QRDGGAHLAGFRGALTRVLNQYIEQEGLAKKAKVSTTGDDAREGLTAIVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  +   F  +L++ P EA  ++  +++ +  R   RK R    R
Sbjct: 230 QTKDKLVSSEVRTAVEQEMGKTFSDFLLEFPQEAKAIVSKMLDAARAREAARKAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +E+++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV 
Sbjct: 290 KGALDIAGLPGKLADCQEKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASL 554
            A  +K+ ++ ++  L+ ALGC   R ++  + LRY  +IIMTDADVDG+HI +L
Sbjct: 350 KARFDKMLSSAEVGTLITALGCGIGREEFNPDKLRYHSIIIMTDADVDGSHIRTL 404


>gi|307939336|gb|ADN95859.1| DNA gyrase B [Hymenobacter gelipurpurascens]
          Length = 437

 Score =  236 bits (602), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 164/440 (37%), Positives = 235/440 (53%), Gaps = 21/440 (4%)

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           +I+T LHAGG FD  +Y++SGGLHGVG+S VNALS +L VTV R   ++ Q++  G P  
Sbjct: 1   LIMTVLHAGGXFDKDSYKVSGGLHGVGVSCVNALSKDLKVTVRRNGKMYEQEYKIGAPQY 60

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
           P+ +  +     GT++ F PD  IF +   +  A +    +  +YL+  ++   +  +E 
Sbjct: 61  PVREIGETEEH-GTQVEFLPDDTIFTESV-YKYATVASRLRELSYLNKGIRITLTDRREK 118

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
            E       E+FY  GGL  ++Q    +              +KG     VE A+ + + 
Sbjct: 119 GENGAEFLTEDFYSEGGLAEFVQYLDGSERRALMPAPIHVISEKGNT--PVEVALQYNDS 176

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVG 368
               I SY N I T EGGTH +G R ALTR +K YA+ +    K  + I  +D       
Sbjct: 177 YQENIFSYVNNINTHEGGTHVAGFRSALTRTLKAYADKSGKLEKAKVEISGEDFREGLTA 236

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSE 427
           ++SV ++EP+F GQTKTKL + +    V  A+ +    YL +NP EA  ++E VI     
Sbjct: 237 VISVKVQEPQFEGQTKTKLGNNEVSGAVNTAVGEILTQYLEENPKEAGIIVEKVILAAKA 296

Query: 428 ERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
               R+ +  V RKT +    LPGKLADCS++     EL++VEGDSAGG+AKQ RNR+ Q
Sbjct: 297 RIAARKAREMVQRKTVLGSTSLPGKLADCSESDPEICELYLVEGDSAGGTAKQGRNRAFQ 356

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY-------------REEDLR 534
           A+LPLRGKILNV  A   +I  N++I +++ ALG                        LR
Sbjct: 357 AILPLRGKILNVEKAQEHRILENEEIRNMITALGVSFGVNADVEKGIEADAKALNTTKLR 416

Query: 535 YEKVIIMTDADVDGAHIASL 554
           Y KV I+TDAD   + I +L
Sbjct: 417 YHKVFILTDADXHXSXIHTL 436


>gi|4894894|gb|AAD32646.1|AF136386_1 gyrase B [Photobacterium phosphoreum]
          Length = 420

 Score =  236 bits (602), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 149/429 (34%), Positives = 243/429 (56%), Gaps = 14/429 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGK D+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I+ Q +  G+P 
Sbjct: 1   EVIMTVLHAGGKLDDNSYKVSGGLHGVGVSVVNALSEKVELTINRNGHIYQQTYCHGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL +     +K GTR+ F P  + F +   F    L K  +  ++L+  +      ++E
Sbjct: 61  APLAEVGD-SDKTGTRLRFWPSEETFTNNLEFHYEILAKRLRELSFLNSGISIRLIDERE 119

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   +++ F + GG++ +++    N++ I  ++F   +E++     TVE A+ W +
Sbjct: 120 ------EGKQDHFTYEGGIRAFVEHLNRNKTPIHQKVFHFDSERED--GITVEVAMQWND 171

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                +  + N I   +GGTH +G R ALTR +  + +      K   +   DD     +
Sbjct: 172 GFQEGVYCFTNNIPQRDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLI 231

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS- 426
            ++SV + +P+F+ QTK KLVS + +  VE+A+ + F  +L+++P +A       I+ S 
Sbjct: 232 AVVSVKVPDPKFSSQTKDKLVSSEVKTAVESAMNEKFAEFLLKSPAKAKIDCGKNIDASR 291

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LP KLADC +     +EL+IVE DSAGGSAKQ RNR N
Sbjct: 292 AREAARKAREMTRRKGALDLAGLPRKLADCQEKDPALSELYIVERDSAGGSAKQGRNRKN 351

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LR  +        
Sbjct: 352 QAILPLKGKILNVEKARFDKMLSSQELATLITAMGCGIGRDEYNPDKLRLPQYHHHDRRR 411

Query: 546 VDGAHIASL 554
            DG+HI +L
Sbjct: 412 RDGSHIRTL 420


>gi|2654386|emb|CAB09527.1| gyrase beta subunit [Acholeplasma laidlawii]
          Length = 174

 Score =  236 bits (602), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 72/181 (39%), Positives = 114/181 (62%), Gaps = 8/181 (4%)

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA++PLRGK+LNV  A  +K+ +N++I++L+QA+G     ++     RY K++IMTDA
Sbjct: 1   EFQAIMPLRGKVLNVEKARLDKMLSNKEIVNLIQAMGTGISDEFDITKARYHKIVIMTDA 60

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           DVDGAHI +LLLTF ++ M  LI+  +++   PPL++I+ G    Y ++E+   ++L+  
Sbjct: 61  DVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYKISWGRNFQYRYNEQELNELLKTI 120

Query: 605 KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMG 664
           +     K  I R+KGLGEM A QL +T MD  KRTLL++++   +    +     + LMG
Sbjct: 121 E----TKPSIQRYKGLGEMDAEQLWDTTMDPAKRTLLQIKLEDAI----EADQVFSMLMG 172

Query: 665 T 665
            
Sbjct: 173 E 173


>gi|295979547|dbj|BAJ07446.1| DNA gyrase subunit B [Asticcacaulis biprosthecium]
          Length = 323

 Score =  236 bits (602), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 109/332 (32%), Positives = 171/332 (51%), Gaps = 29/332 (8%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DNA+DEV+AG+A  +EV L+ +G  TV D+GRGIPV+ H +   
Sbjct: 1   DTDDGSGLHHMVYEVVDNAIDEVLAGHATRVEVILNVDGSCTVTDDGRGIPVDIH-EGEG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALSD L + + RQ    S +F R
Sbjct: 60  VSAAEVIMTELHAGGKFDQNSYKVSGGLHGVGVSVVNALSDYLDLVIYRQGKKHSVRFER 119

Query: 187 GIPLSPLEKKEKV------RNKRGTRITFRPDP----------KIFGDKAGFDAARLLKM 230
           G  + PLE   +       R+  GT +TF P                    FD   L   
Sbjct: 120 GATVKPLEVIGEAPKRDDGRDYTGTEVTFFPSMAKKDAQGMTLDGTFSFIDFDRKTLEHR 179

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  A+L+  V   ++  +E       P +   ++ GG+  +++   + ++ I       
Sbjct: 180 LRELAFLNSGVSIRFADLRE-----AEPYETLLHYDGGIIEFVRHLDKAKTAIIKAPVAV 234

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
           +  ++      V+ A+ W +     +  + N I   +GGTH +  R ALTR +  Y E +
Sbjct: 235 RGHREKV---EVDLALQWNDSYHETMLCFTNNIPQRDGGTHLAAFRGALTRVMTAYLESS 291

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEF 379
               K  +++  +D       +LSV + +P+F
Sbjct: 292 GAAKKEKVTVTGEDAREGLTCVLSVKVPDPKF 323


>gi|330971530|gb|EGH71596.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 228

 Score =  236 bits (602), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 103/239 (43%), Positives = 140/239 (58%), Gaps = 14/239 (5%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
            AN SAS +Y+A +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A
Sbjct: 1   MANPSAS-SYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHA 56

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             ++V L  +  L V D+GRG+PV+ HP+    S +E+ILT LHAGGKF N  Y+ SGGL
Sbjct: 57  RSVQVILHADNSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGL 115

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213
           HGVGISVVNALS  + V V R    +   F+ G   + L     V +   GT + F PDP
Sbjct: 116 HGVGISVVNALSTRVRVRVKRDGNEYEMTFADGYKATELAVVGTVGKRNTGTSVYFAPDP 175

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           K F     F  +RL  + ++KA L   +   +       E     EK E+++  GL++Y
Sbjct: 176 KYFDT-PKFSVSRLKHVLKAKAVLCPGLLVSF-------EDKSSGEKVEWHYEDGLRSY 226


>gi|212659914|gb|ACJ37013.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 269

 Score =  236 bits (602), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 98/281 (34%), Positives = 161/281 (57%), Gaps = 13/281 (4%)

Query: 77  LFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTT 136
           +  EV+DN++DE +AG+A+ I V +  +G ++V DNGRGIPV+ H K    S  E+ILT 
Sbjct: 1   MVFEVVDNSVDEALAGHADSILVKIHVDGSVSVSDNGRGIPVDIH-KEEGVSAAEVILTV 59

Query: 137 LHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK 196
           LHAGGKFD+++Y++SGGLHGVG+SVVNALS+ L + + R    + Q++  G P  PL++ 
Sbjct: 60  LHAGGKFDDNSYKVSGGLHGVGVSVVNALSERLWLDIWRDGYHYQQEYVLGDPQYPLKQL 119

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
            +V  KRGT + F+P  +IF D   F    L K  +  ++L+  +K     ++       
Sbjct: 120 -EVSAKRGTTLRFKPAKEIFSD-VEFHYENLAKRLRELSFLNSGLKVSLIDERG------ 171

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
              +++F++ GG++++++   + ++ + S + +   E  G     V+ A+ W +     +
Sbjct: 172 EGRRDDFHYEGGIRSFVEHLAQLKTPLHSNVISVTGEHNGI---VVDVALQWTDAYQETM 228

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
             + N I   +GGTH +G R ALTR +  Y E     R   
Sbjct: 229 YCFTNNIPQKDGGTHLAGFRAALTRTLGNYIEQNGIARQAK 269


>gi|83700332|gb|ABC41014.1| DNA gyrase subunit B [Phenylobacterium zucineum]
          Length = 425

 Score =  236 bits (602), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 162/434 (37%), Positives = 236/434 (54%), Gaps = 20/434 (4%)

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           +I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALSD L + V R       +F RG  ++
Sbjct: 1   VIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDFLKLKVFRGGMQHEMEFRRGDAVA 60

Query: 192 PLEKKEKV------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
           PL    K           GT +TF P    F     FD   L    +  A+L+  V    
Sbjct: 61  PLAVTGKAPLRDNGEFLTGTHVTFLPSTATF-RFIEFDLKTLEHRLRELAFLNSGVTIWL 119

Query: 246 SCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
              +        P +E  ++ GG++ +++   + +  +  E    +  K       V+ A
Sbjct: 120 KDLR-----GAEPFEEVMHYEGGIEAFVRHLDKAKHPLMKEPIVVRGRKDTV---EVDMA 171

Query: 306 IAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDL 362
           + W +   E    + N I   +GGTH +  R ALTR I  YAE +    +  +S+  +D 
Sbjct: 172 LWWNDGYHENVLCFTNNIPQRDGGTHLAAFRSALTRIITNYAEQSGAAKREKVSVSGEDA 231

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
                 +LSV + +P+F+ QTK KLVS + +  VE  + +    +  ++P EA  +++ +
Sbjct: 232 REGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGLVSEGLSTWFEEHPNEAKLIVQKI 291

Query: 423 -IERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
               +     R+ +    RK+A+    LPGKLADC +     +ELF+VEGDSAGGSAKQA
Sbjct: 292 TEAAAAREAARKARELTRRKSALDITSLPGKLADCQEKDPAKSELFLVEGDSAGGSAKQA 351

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
           RNR NQA+LPLRGKILNV  A  +K+ ++ Q+  L+ ALG    R  +  E LRY K++I
Sbjct: 352 RNRENQAILPLRGKILNVERARFDKMLSSDQVGTLITALGAGIGRDDFDIEKLRYHKIVI 411

Query: 541 MTDADVDGAHIASL 554
           MTDADVDGAHI +L
Sbjct: 412 MTDADVDGAHIRTL 425


>gi|4996798|dbj|BAA78444.1| subunit B protein of DNA gyrase [bacterium rM5]
          Length = 322

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 106/328 (32%), Positives = 162/328 (49%), Gaps = 33/328 (10%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPN 126
           D   LHHL  EV+DN++DE +AG+ + I V++  +  ++V DNGRGIP          P 
Sbjct: 3   DGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHTDNSISVTDNGRGIPTGVKMDDKHEPK 62

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV R+  +   +FSR
Sbjct: 63  RSASEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKMLRLTVRREGKVHVLEFSR 122

Query: 187 G------------IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           G            + +SP+         RGT + F PD  IF + + F    L K  +  
Sbjct: 123 GFVQNRLIEDVGGVEVSPMRITGDTEK-RGTEVHFLPDTDIFKENSDFHYEILAKRLREL 181

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V+     ++   E         F   GG++ +++   + ++++    F    E+
Sbjct: 182 SFLNNGVRIRLKDERSGKEDD-------FSGAGGVRGFVEFINKGKTVLHPNPFYASGER 234

Query: 295 -------KGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYA 346
                         VE A+ W     E    + N I   +GGTH +GLR A+TR I KY 
Sbjct: 235 ASETYGGIPDTHIGVEVAMQWNSGYSEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYI 294

Query: 347 ELTQ--NKRAISIISDDLMISAVGILSV 372
           +      K  + +  DD+      +LSV
Sbjct: 295 DEHDFAKKAKVEVTGDDMREGLCCVLSV 322


>gi|328349741|emb|CBY89178.1| GyrB protein [Flavobacterium sp. R-38349]
          Length = 409

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 150/412 (36%), Positives = 224/412 (54%), Gaps = 11/412 (2%)

Query: 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA-RQ 176
           V+ H K    S LE+++T + AGGKFD  +Y++SGGLHGVG+SVVNALS  L  TV  R 
Sbjct: 1   VDMHKK-EGVSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSKHLRATVHSRD 59

Query: 177 NTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAY 236
             ++ Q++ RG  L P++   +    RGT +TF PD  IF     F    L    +  ++
Sbjct: 60  GKVYEQEYERGKALYPVKPIGETTK-RGTIVTFYPDDTIFTQTTEFSYETLSARMRELSF 118

Query: 237 LSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG 296
           L+  +   ++  +E  +K G    E+F+   GLK Y++   +NR  I + + +  +EK  
Sbjct: 119 LNKGITITFTDKRE-LDKDGNFVSEKFHSTEGLKEYIRYLDKNREPIIAHVISMDSEK-- 175

Query: 297 THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KR 353
                VE A+ +       I SY N I T EGGTH  G R  LTR +KKYA+ +    K 
Sbjct: 176 -GEIPVEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADSSGMLDKL 234

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
              I  DD       I+SV ++EP+F GQTKTKL + +    V  A+ D  ++YL +NP 
Sbjct: 235 KFEISGDDFREGLTAIISVKVQEPQFEGQTKTKLGNREVVSPVSQAVGDMIENYLEENPN 294

Query: 414 EATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA-DCSQNIAHGTELFIVEGD 472
           +A  +++ VI  ++ R   +K RE+ ++  +           DCS+      E+++VEGD
Sbjct: 295 DARIIVQKVILAAQARHAAKKAREMVQRKTVLGGGGLPGKLSDCSEQDPARCEVYLVEGD 354

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           S GG+AKQ R+R+ Q +LPLRGKI N   A   K+  N++I ++  ALG   
Sbjct: 355 SXGGTAKQGRDRAFQXILPLRGKIXNXEKAMHHKVFENEEIRNIFTALGVTI 406


>gi|269799084|gb|ACZ43820.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 368

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 128/378 (33%), Positives = 207/378 (54%), Gaps = 16/378 (4%)

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V++  +G ++V D+GRGIPV+ H +    S  E+ILT LHAGGKFD+++Y++SGGLHG
Sbjct: 2   IVVTIHDDGSVSVSDDGRGIPVDIHEE-EGVSAAEVILTVLHAGGKFDDNSYKVSGGLHG 60

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+SVVNALS++L +T+ R   I +Q +  G+P  P+ +   V +  GT + F P  + F
Sbjct: 61  VGVSVVNALSEKLELTIFRHGKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFWPSHETF 119

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   F    L K  +  ++L+  V      ++E        + + F + GG+K ++   
Sbjct: 120 TNTL-FHYDILAKRLRELSFLNSGVSIKLIDERED------GKSDHFVYEGGIKAFVDYL 172

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
             N++ I+ + F    E++     TVE A+ W +     I  + N I   +GGTH +G R
Sbjct: 173 NVNKTPINKDAFHFSVERED--GITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFR 230

Query: 336 VALTRGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
            ALTR +  Y E     +  ++ +   DD       ++SV + +P+F+ QTK KLVS + 
Sbjct: 231 GALTRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEV 290

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPG 451
           +  VE A+ +    YL++NP EA+ ++  +I+        R+ +    RK A+    LPG
Sbjct: 291 KSAVEQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKARDMTRRKGALDLAGLPG 350

Query: 452 KLADCSQNIAHGTELFIV 469
           KLADC +     +EL+IV
Sbjct: 351 KLADCQEKDPALSELYIV 368


>gi|281334024|gb|ADA61201.1| DNA gyrase subunit B [Pseudomonas aeruginosa]
          Length = 405

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 159/417 (38%), Positives = 236/417 (56%), Gaps = 18/417 (4%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKFD++TY++SGGLHGVG+SVVNALS EL +T+ R N ++ Q +  G+P  PL +  
Sbjct: 1   HAGGKFDDNTYKVSGGLHGVGVSVVNALSHELRLTIRRHNKVWEQVYHHGVPQFPLREVG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +  +  GT + F+P P+ F +   F    L K  +  ++L+  V      ++        
Sbjct: 61  ET-DGSGTEVHFKPSPETFSNIH-FSWDILAKRIRELSFLNSGVGILLRDER-------T 111

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEI 315
            ++E F + GGLK +++    N++ ++       + E+ G     VE A+ W +     +
Sbjct: 112 GKEELFKYEGGLKAFVEYLNTNKTAVNEVFHFNVQREEDGV---GVEVALQWNDSFNENL 168

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVF 373
             + N I   +GGTH +G R ALTR +  Y E     +        DD       I+SV 
Sbjct: 169 LCFTNNIPQRDGGTHLAGFRSALTRNLNNYIEAEGLAKKFKIATTGDDAREGLTAIISVK 228

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRR 432
           + +P+F+ QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+        R
Sbjct: 229 VPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAAR 288

Query: 433 RKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           + +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR  QA+LPL
Sbjct: 289 KAREMTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRRTQAILPL 348

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDG 548
           +GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG
Sbjct: 349 KGKILNVEKARFDKMLSSQEVGTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDG 405


>gi|213391524|gb|ACJ46503.1| gyrase B subunit [Shewanella sp. BSw20248]
          Length = 419

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 152/417 (36%), Positives = 237/417 (56%), Gaps = 16/417 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKFD+++Y++SGGLHGVG+SVVNALS +L +T+ R   ++ Q ++ G+P +P+++  
Sbjct: 8   HAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLQLTIRRAGKVYEQFYTHGVPDAPIKEIG 67

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
                 GT + F P    F +   F    L K  +  ++L+  V      +++  +    
Sbjct: 68  DAVK-TGTELRFWPSGDTFTN-VEFHFEILAKRVRELSFLNSGVGIRLVDERDGKD---- 121

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
              E F + GG+  ++     N++ I+ ++F    E++     TVE A+ W +     I 
Sbjct: 122 ---EFFKYEGGISAFVDYLNRNKTPINKDVFHFSHERED--GITVEVAMQWNDGYQENIF 176

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFI 374
            + N I   +GGTH +G R ALTR +  Y E      K   +   DD       ++SV +
Sbjct: 177 CFTNNIPQRDGGTHLAGFRGALTRNLNNYMEREGFNKKGKTNATGDDAREGLTAVISVKV 236

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRR 433
            +P+F+ QTK KLVS + +  VE  + +  + YL++NP +A  ++  +++        R+
Sbjct: 237 PDPKFSSQTKDKLVSSEVKSAVEQTMGEQLNDYLLENPADAKLIVGKIVDAARAREAARK 296

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            +    RK A+    LPG+LADC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+
Sbjct: 297 AREMTRRKGALDLGGLPGELADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLK 356

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGA 549
           GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  +  RY  +IIMTDADVDGA
Sbjct: 357 GKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDGA 413


>gi|110612701|gb|ABG78313.1| GyrB [uncultured bacterium]
          Length = 429

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 157/433 (36%), Positives = 233/433 (53%), Gaps = 19/433 (4%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
            AGGKFDN  Y++SGGLHGVG SVVNALS+E  V V +   +  Q++  GIP + ++K  
Sbjct: 1   MAGGKFDNDAYKVSGGLHGVGASVVNALSEEATVVVHQDGGMHLQEYKIGIPKARVKKIG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
             ++  GT   F+PD  IF +   ++  +++   + +AYL    +      +E  E +  
Sbjct: 61  TTKSH-GTITLFKPDATIFKEGIEWNWDKIVSHLRQQAYLVKGTRVALFDAREHQEAFET 119

Query: 258 PEKE-----------EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
                           FYF GGL++ +    + ++ I   IF    E++G     VE A 
Sbjct: 120 ETPMLRDLGIDAPSMTFYFEGGLRSLVAFYNKRQTPIHKRIFYVDKEQEGVQ---VEVAF 176

Query: 307 AW-CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            +  +  P IT++ N     EGGTH +G + ALTR +  Y        ++  +   DD++
Sbjct: 177 QYVDDITPRITAFANNTYNSEGGTHVTGFKTALTRSLNTYGRAANIIKEKDENFTGDDVL 236

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                ++SV + E +F GQTK KL S +A   V +   +    +L +NP +A  ++  V+
Sbjct: 237 EGITAVVSVKLPEIQFEGQTKAKLGSTEATSAVASVFGEALGMFLEENPDDARAIINKVL 296

Query: 424 ERSEERLRRRKQREVN-RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
              + R   +  ++   RK A+  + LPGKLADC    A   ELFIVEGDSAGGS+KQ R
Sbjct: 297 LALKARKAAKAAKDSVLRKGALEGMTLPGKLADCQVKNAEEAELFIVEGDSAGGSSKQGR 356

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           +R  QA+LPLRGKILNV  A  +++  + +I  LV ALG      +    LRY K+I+ T
Sbjct: 357 DRRTQAILPLRGKILNVERARIDRMLASVEIRALVVALGTAIGDVFDISKLRYHKLILAT 416

Query: 543 DADVDGAHIASLL 555
           DADVDG+HI +LL
Sbjct: 417 DADVDGSHIRTLL 429


>gi|237502647|gb|ACQ94972.1| DNA gyrase subunit B [Bacillus thuringiensis]
          Length = 391

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 153/400 (38%), Positives = 222/400 (55%), Gaps = 13/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS+ + V V + N I   +F+ G P + L    +     G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSEWMEVEVKQNNKIHYMRFTVGTPDADLAVIGETEE-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T++TF+PDP IF +   F+   L K  +  A+L+  ++      +   E+      E F+
Sbjct: 60  TKVTFKPDPTIFTETTVFEYDVLQKRIRELAFLNKGLRITLKDTRPDQERE-----ESFH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++   +NR  +  E+   + EK G     VE A+ + +     I S+ N I 
Sbjct: 115 YEGGIVQFVEYLNKNREPLHEEVIYCEGEKDGLF---VEVALQYNDSYVSNIYSFANNIN 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G + +LTR I  Y+       ++  ++  DD+      I+SV I+EP+F G
Sbjct: 172 THEGGTHETGFKTSLTRVINDYSRKFNLLKEKDPNLSGDDVREGITAIISVKIQEPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTKTKL + +A+   E+   D F  ++ +NP  A K++E  +  S  R   RK R    R
Sbjct: 232 QTKTKLGNSEARSITESVFGDRFSTFMEENPGVAKKVVEKALMASRAREAARKAREMTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS   A  +ELFIVEGDSAGGSAK  R+R  QA+LPLRGK+LNV 
Sbjct: 292 KSALEVSALPGKLADCSSKDASESELFIVEGDSAGGSAKSGRDRHFQAILPLRGKVLNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +KI  N +I  ++ ALG      +     RY KV+I
Sbjct: 352 KARLDKILGNNEIRMIITALGTGVGEDFDITKARYHKVVI 391


>gi|4996778|dbj|BAA78434.1| subunit B protein of DNA gyrase [bacterium rJ5]
          Length = 277

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 102/288 (35%), Positives = 154/288 (53%), Gaps = 14/288 (4%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
           D   LHH+  EV+DNA+DE +AGY   + V+L G+G + V DNGRGIP E  P+   +S 
Sbjct: 3   DGTGLHHMVFEVVDNAIDEALAGYCTEVTVTLHGDGSVAVTDNGRGIPTEIMPE-EGRSA 61

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            E+I+T LHAGGKF  S Y++SGGLHGVG+SVVNALSD+L + + RQ     Q++  G P
Sbjct: 62  AEVIMTILHAGGKFGGSGYKVSGGLHGVGVSVVNALSDKLLLDIYRQGRHHHQEYRLGEP 121

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            +PL ++    +KRGT + F P  KIF +        L +  +  ++L+  V+     + 
Sbjct: 122 QAPLAEQGDT-DKRGTAVRFYPSGKIFSN-LEMHYDILARRLRELSFLNSGVRIVLREEA 179

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
              E       + F + GG+  +++   +++S I   +     E        VE A+ W 
Sbjct: 180 SGRE-------DVFEYKGGISAFVEYLNKSKSPIHDSVLYMVAELDNV---VVEAALQWN 229

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
           +     +  + N I   +GGTH +G R ALTR + +Y E     +   
Sbjct: 230 DSYTENVFCFTNNIPQRDGGTHLTGFRNALTRTLGEYLESQGIIKKEK 277


>gi|213391528|gb|ACJ46505.1| gyrase B subunit [Shewanella sp. BSw10166]
          Length = 419

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 153/417 (36%), Positives = 237/417 (56%), Gaps = 16/417 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKFD+++Y++SGGLHGVG+SVVNALS +L +T+ R   ++ Q ++ G+P +P+++  
Sbjct: 8   HAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLQLTIRRAGKVYEQFYTHGVPDAPIKEIG 67

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
                 GT + F P    F +   F    L K  +  ++L+  V      +++  +    
Sbjct: 68  DAVK-TGTELRFWPSGDTFTN-VEFHFEILAKRVRELSFLNSGVGIRLVDERDGKD---- 121

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
              E F + GG+  ++     N++ I+ ++F    E++     TVE A+ W +     I 
Sbjct: 122 ---EFFKYEGGISAFVDYLNRNKTPINKDVFHFSHERED--GITVEVAMQWNDGYQENIF 176

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFI 374
            + N I   +GGTH +G R ALTR +  Y E      K   +   DD       ++SV +
Sbjct: 177 CFTNNIPQRDGGTHLAGFRGALTRNLNNYMEREGFNKKGKTNATGDDAREGLTAVISVKV 236

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRR 433
            +P+F+ QTK KLVS + +  VE  + +  + YL++NP +A  ++  +++        R+
Sbjct: 237 PDPKFSSQTKDKLVSSEVKSAVEQTMGEQLNDYLLENPADAKLIVGKIVDAARAREAARK 296

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            +    RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+
Sbjct: 297 AREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLK 356

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGA 549
           GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  +  RY  +IIMTDADVDGA
Sbjct: 357 GKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDGA 413


>gi|302826295|ref|XP_002994651.1| hypothetical protein SELMODRAFT_138946 [Selaginella moellendorffii]
 gi|300137231|gb|EFJ04283.1| hypothetical protein SELMODRAFT_138946 [Selaginella moellendorffii]
          Length = 980

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 98/505 (19%), Positives = 186/505 (36%), Gaps = 40/505 (7%)

Query: 190 LSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247
            S         N+  T++TF+PD              A + K     A   G        
Sbjct: 13  KSEPAISSCKSNENWTKVTFKPDLAKFHMTYLEEDVVALMSKRVLDIAGCLG-------- 64

Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307
            + +  +    +     F   +  YL +  + +      I+              E  ++
Sbjct: 65  -RTVKVELNGQKLPVKTFSDYVGLYLASAQKGKEETLPRIY-------ERANDRWEVCVS 116

Query: 308 WCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAV 367
             +   +  S+ N+I T  GGTH   +   +   I++           ++    +     
Sbjct: 117 LSDGQFQQVSFVNSIATIRGGTHVQHVSEQIVSHIQEIVNKKNK--NANVKGFQIRNHLW 174

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
             ++  I  P F  QTK  L +       +  L   F   + +       +++ V+  ++
Sbjct: 175 VFVNSLIDNPAFDSQTKETLTTRQTSFGSKCELSPEFLKKVSKC-----GVVDNVLSWAD 229

Query: 428 ERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN--- 483
            +  +  ++    ++  +  +       D     +    L + EGDSA   A    +   
Sbjct: 230 FKQSKELKKNDGAKRQRLTGIAKLDDANDAGGKNSEACTLILTEGDSAKALAMSGISVVG 289

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMT 542
           R++  V PLRGK+LNV  A  ++I +N +I  + Q LG +    Y     LRY  ++IMT
Sbjct: 290 RNHYGVFPLRGKLLNVREATHKQIMDNAEITSIKQILGLQQGKGYENTKSLRYGHLMIMT 349

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRIT-QGTKSVYAHDEEHKQKI 600
           D D DG+HI  L++ F +     L++    L     P+ + T +  K +  +     +  
Sbjct: 350 DQDHDGSHIKGLIINFIHTFWPSLLKVPGFLVEFITPIVKATHKNGKVLSFYTMPEYESW 409

Query: 601 LEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660
            E  +   KG   I  +KGLG   A + KE   D  K    +     +       + + +
Sbjct: 410 KESLRGETKG-WSIKYYKGLGTSTAKEGKEYFRDLVKH--KKDFAWDNDEDGDSIELAFS 466

Query: 661 KLMGTKADERFKFIQ--ERASFIDD 683
           K    K + R  +++  +  +F+D 
Sbjct: 467 K---KKTEARKIWLRGYQPGTFLDQ 488


>gi|119369940|gb|ABL67984.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 141/432 (32%), Positives = 213/432 (49%), Gaps = 21/432 (4%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALSDELH+T+ R   I  Q +  G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSDELHLTIERHGKIHEQHYRNGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            P++              +            F    L K  +  ++L+  VK     ++ 
Sbjct: 61  EPVKVTGDTTTTG--TKVWFKPSSATFTNIEFHYDILAKRLRELSFLNSGVKIHLHDERS 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   +++EF + GG+K +++    N++ I   +F+    K       VE A+ W +
Sbjct: 119 -------DKRDEFCYEGGIKAFVEHLNRNKTPIIPCVFSFTAAKDNV---AVELALQWND 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGI 369
                +  + N I   +GGTH +G R  LTR +  Y E      A    S          
Sbjct: 169 SFQENVYCFTNNIPQKDGGTHLAGFRAGLTRTLNTYIEKEGL--AQKGKSFHNRRGCTRR 226

Query: 370 LSVFIREPEFAGQ-----TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
                       Q      +           + +        +  ++    +   + V +
Sbjct: 227 TDCDFIGKSGRSQILVTNKRQVGFIRSEIFCLISCRCKIQGLFTWKSVRFKSHCWKNVWK 286

Query: 425 RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           R      RR +  V RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ R+R
Sbjct: 287 RRARDAARRAREMVRRKGAMDIAGLPGKLADCQEKDPAMSEIYIVEGDSAGGSAKQGRDR 346

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTD 543
           + QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC      Y  + +RY ++IIMTD
Sbjct: 347 NFQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGHEDYDPDKVRYHRIIIMTD 406

Query: 544 ADVDGAHIASLL 555
           ADVDG+HI +LL
Sbjct: 407 ADVDGSHIRTLL 418


>gi|110264857|gb|ABG57004.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|110264859|gb|ABG57005.1| DNA gyrase beta subunit [Photobacterium kishitanii]
          Length = 404

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 153/413 (37%), Positives = 242/413 (58%), Gaps = 14/413 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R+  I  Q +  G+P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRKGHIHQQSYHHGVPDAPLAVIGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GTR+ F P  + F +   F    L K  +  ++L+  V      ++E        
Sbjct: 61  T-DKTGTRLRFWPSEETFTNNLEFQYEILAKRLRELSFLNSGVSIRLIDERE------EG 113

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +++ F + GG++ +++    N++ I  ++F   +E++     TVE A+ W +     +  
Sbjct: 114 KQDHFMYEGGIRAFVEHLNRNKTPIHQKVFHFDSERED--GITVEVAMQWNDGFQEGVYC 171

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD     V ++SV + 
Sbjct: 172 FTNNIPQRDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLVAVVSVKVP 231

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ + F  +L+++P +A  +   +I+ S      R+ 
Sbjct: 232 DPKFSSQTKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKA 291

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 292 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 351

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADV 546
           KILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDADV
Sbjct: 352 KILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDADV 404


>gi|110264841|gb|ABG56996.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|110264843|gb|ABG56997.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|110264851|gb|ABG57001.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|110264853|gb|ABG57002.1| DNA gyrase beta subunit [Photobacterium kishitanii]
          Length = 404

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 152/413 (36%), Positives = 242/413 (58%), Gaps = 14/413 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R+  I  Q +  G+P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRKGHIHQQSYHHGVPDAPLAVIGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GTR+ F P  + F +   F    L K  +  ++L+  V      ++E        
Sbjct: 61  T-DKTGTRLRFWPSEETFTNNLEFQYEILAKRLRELSFLNSGVSIRLIDERE------EG 113

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +++ F + GG++ +++    N++ I  ++F   +E++     TVE A+ W +     +  
Sbjct: 114 KQDHFMYEGGIRAFVEHLNRNKTPIHQKVFHFDSERED--GITVEVAMQWNDGFQEGVYC 171

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD     + ++SV + 
Sbjct: 172 FTNNIPQRDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLIAVVSVKVP 231

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ + F  +L+++P +A  +   +I+ S      R+ 
Sbjct: 232 DPKFSSQTKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKA 291

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 292 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 351

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADV 546
           KILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDADV
Sbjct: 352 KILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDADV 404


>gi|42541289|gb|AAS19524.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|42541291|gb|AAS19525.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|42541293|gb|AAS19526.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
          Length = 402

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 150/411 (36%), Positives = 236/411 (57%), Gaps = 15/411 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I  Q +  G+P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIKRGGHIHQQVYRHGVPDAPLAVIGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             ++ GTRI F P  + F +   F    L K  +  ++L+  V    + ++E        
Sbjct: 61  T-DETGTRIRFWPSEETFTN-IEFQYEILAKRLRELSFLNSGVSIKLNDERE------EG 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F + GG++ +++    N++ I  ++F   +E+      +VE A+ W +     I  
Sbjct: 113 KHDHFMYEGGIQAFVEHLNRNKTPIHPKVFHFDSERDD--GISVEVAMQWNDGFQESIFC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV + 
Sbjct: 171 FTNNIPQRDGGTHLAGFRGALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVISVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ +    +L++NP +A  +   +I+ S      R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKAAVESAMNEKLAEFLLENPADAKTVCTKIIDASRAREAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           KILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDA
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDA 401


>gi|4996776|dbj|BAA78433.1| subunit B protein of DNA gyrase [bacterium rJ4]
          Length = 276

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 102/285 (35%), Positives = 154/285 (54%), Gaps = 14/285 (4%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129
           D   LHH+  EV+DNA+DE +AGY   + V+L G+G + V DNGRGIP E  P+   +S 
Sbjct: 3   DGTGLHHMVFEVVDNAIDEALAGYCTEVTVTLHGDGSVAVTDNGRGIPTEIMPE-EGRSA 61

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            E+I+T LHAGGKF  S Y++SGGLHGVG+SVVNALSD+L + + RQ     Q++  G P
Sbjct: 62  AEVIMTILHAGGKFGGSGYKVSGGLHGVGVSVVNALSDKLLLDIYRQGRHHHQEYRLGEP 121

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            +PL ++    +KRGT + F P  KIF +        L +  +  ++L+  V+     + 
Sbjct: 122 QAPLAEQGDT-DKRGTAVRFYPSGKIFSN-LEMHYDILARRLRELSFLNSGVRIVLREEA 179

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
              E       + F + GG+  +++   +++S I   +     E        VE A+ W 
Sbjct: 180 SGRE-------DVFEYKGGISAFVEYLNKSKSPIHDSVLYMVAELDNV---VVEAALQWN 229

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR 353
           +     +  + N I   +GGTH +G R ALTR + +Y E     +
Sbjct: 230 DSYTENVFCFTNNIPQRDGGTHLTGFRNALTRTLGEYLESQGIIK 274


>gi|19909715|dbj|BAB87053.1| DNA gyrase subunit B [Cupriavidus necator]
          Length = 310

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 105/320 (32%), Positives = 165/320 (51%), Gaps = 33/320 (10%)

Query: 72  KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIP--VENHPKFP-NKS 128
             LHHL  EV+DN++DE +AGY   I+V++  +  ++++DNGRGIP  V+   K    +S
Sbjct: 2   TGLHHLVFEVLDNSIDEALAGYCTEIQVTIHSDNSISIIDNGRGIPPLVKFDDKHEPKRS 61

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
             EI +T LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV R   +   +F++G 
Sbjct: 62  AAEIAMTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKWLRLTVRRDGQVHLIEFAKGD 121

Query: 189 PLSP----------------LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQ 232
             +                   K     +KRGT + F  D +IF +   F    L K  +
Sbjct: 122 VQNRIVETVTGPDGQPVEVSPMKIIGATDKRGTEVHFLADEEIFTNV-EFHYEILSKRIR 180

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             ++L+  V       +         ++E+F F GG+K +++    ++S++   IF   T
Sbjct: 181 ELSFLNNGVHIKLVDQR-------TGKEEDFAFSGGVKGFVEYINRSKSVLHPNIFYANT 233

Query: 293 EKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ- 350
           EK G     VE A+ W +    ++  + N I   +GGTH +GLR A+TR I K+ E  + 
Sbjct: 234 EKDGI---AVEVAMQWNDGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKHIEENEV 290

Query: 351 -NKRAISIISDDLMISAVGI 369
             K  +    DD+      +
Sbjct: 291 AKKAKVETTGDDMREGLSCV 310


>gi|163256317|dbj|BAF95669.1| DNA gyrase subunit B [Bradyrhizobium sp. KO5]
          Length = 272

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 103/282 (36%), Positives = 156/282 (55%), Gaps = 11/282 (3%)

Query: 79  SEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLH 138
            EV+DNA+DE +AG+A+ + V+L+ +  +TV D+GRGIPV  H K    S  E+I+T LH
Sbjct: 1   YEVVDNAIDEALAGHASRVLVTLNADNSVTVYDDGRGIPVGIH-KEEGVSAAEVIMTQLH 59

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD ++Y++SGGLHGVG+SVVNALS +L + + R +     +F+ G  ++PL+    
Sbjct: 60  AGGKFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHGDAVAPLKVVGD 119

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
              KRGT +TF    + F +   +D A L    +  A+L+  V    S  +   EK    
Sbjct: 120 APGKRGTEVTFLASTETFKN-VEYDFATLEHRLRELAFLNSGVHIVLSDMRHAVEKR--- 175

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TS 317
             EE ++ GG++ +++    N+  I       ++E  G     VE A+ W +   E    
Sbjct: 176 --EEMHYSGGVEEFVKYLDRNKKAIVPAPIMVRSEANGI---GVEAALWWNDSYHENVLC 230

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359
           + N I   +GGTH +G R ALTR +  YAE    K  I++  
Sbjct: 231 FTNNIPQRDGGTHLAGFRGALTRQVNGYAEANAKKEKIALTG 272


>gi|61661866|gb|AAX51588.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
 gi|61661870|gb|AAX51590.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
 gi|61661882|gb|AAX51596.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
 gi|61661884|gb|AAX51597.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
 gi|148793366|gb|ABR12747.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
 gi|148793384|gb|ABR12756.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
 gi|148793388|gb|ABR12758.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
 gi|148793396|gb|ABR12762.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
          Length = 403

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 151/412 (36%), Positives = 242/412 (58%), Gaps = 14/412 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I+ Q +  G+P +PL +   
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRNGHIYQQTYCHGVPQAPLAEVGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GTR+ F P  + F +   F    L K  +  ++L+  +      ++E        
Sbjct: 61  -SDKTGTRLRFWPSEETFTNNLEFHYEILAKRLRELSFLNSGISIRLIDERE------EG 113

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +++ F + GG++ +++    N++ I  ++F   +E++     TVE A+ W +     +  
Sbjct: 114 KQDHFTYEGGIRAFVEHLNRNKTPIHQKVFHFDSERED--GITVEVAMQWNDGFQEGVYC 171

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD     V ++SV + 
Sbjct: 172 FTNNIPQRDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLVAVVSVKVP 231

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ + F  +L+++P +A  +   +I+ S      R+ 
Sbjct: 232 DPKFSSQTKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKA 291

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 292 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 351

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           KILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDAD
Sbjct: 352 KILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDAD 403


>gi|61661886|gb|AAX51598.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
 gi|61661958|gb|AAX51634.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
          Length = 403

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 151/412 (36%), Positives = 242/412 (58%), Gaps = 14/412 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I+ Q +  G+P +PL +   
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRNGHIYQQTYCHGVPQAPLAEVGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GTR+ F P  + F +   F    L K  +  ++L+  +      ++E        
Sbjct: 61  -SDKTGTRLRFWPSEETFTNNLEFHYEILAKRLRELSFLNSGISIRLIDERE------EG 113

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +++ F + GG++ +++    N++ I  ++F   +E++     TVE A+ W +     +  
Sbjct: 114 KQDHFTYEGGIRAFVEHLNRNKTPIHQKVFHFDSERED--GITVEVAMQWNDGFQEGVYC 171

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD     V ++SV + 
Sbjct: 172 FTNNIPQRDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLVAVVSVKVP 231

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ + F  +L+++P +A  +   +I+ S      R+ 
Sbjct: 232 DPKFSSQTKDKLVSSEVKSAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKA 291

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 292 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 351

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           KILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDAD
Sbjct: 352 KILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDAD 403


>gi|29652901|gb|AAO87420.1| DNA gyrase B [Listeria monocytogenes]
          Length = 200

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 88/202 (43%), Positives = 122/202 (60%), Gaps = 2/202 (0%)

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +R +    + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+L
Sbjct: 1   AKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAIL 60

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           P+RGKILNV  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAH
Sbjct: 61  PIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAH 120

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           I +LLLT FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  
Sbjct: 121 IRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDT 178

Query: 611 KIEISRFKGLGEMLASQLKETA 632
           K  I R+KGLGEM   QL +T 
Sbjct: 179 KYSIQRYKGLGEMNPEQLWDTT 200


>gi|110612677|gb|ABG78301.1| GyrB [uncultured bacterium]
          Length = 410

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 147/420 (35%), Positives = 236/420 (56%), Gaps = 15/420 (3%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           G+FD ++Y++SGGLHGVG+SVVNALS +L + + R+  ++ Q++  G P++P+  K   +
Sbjct: 1   GEFDENSYKVSGGLHGVGVSVVNALSTKLTLAIRREGELWEQEYHCGDPVAPIAAKGPAK 60

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
              GT + F PDP++F     F  ARL K  +  AYL+  +    + ++   ++ G+   
Sbjct: 61  G-TGTTVHFWPDPEVFEST-EFSFARLEKRFRELAYLNDGLTILLNDERGDRKREGV--- 115

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
             +++ GG+  ++    ++R  +   +   K ++ G     V+ AI W +     +  + 
Sbjct: 116 --YHYEGGVAAFVLDINKSREAVHPTVIRIKGDRDGVM---VDTAIQWNDGYNESVFPFT 170

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH +G R  +TR +  Y E      K  ++I + D+      +LSV + +P
Sbjct: 171 NNIPQADGGTHLTGFRSVMTRVLGGYMEREGIATKAKVTIDAADMREGMTAVLSVKVPDP 230

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-R 436
           +F+ QTK KLVS + +  VE+ + +    +L + P EA  +   ++E ++ R   RK   
Sbjct: 231 KFSSQTKDKLVSSEVRPIVESVIAEGVGTFLDEKPKEAQAICAKIVEAAKAREAARKARD 290

Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              RK A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R  QA+LPL+GKI
Sbjct: 291 ITRRKGALDIANLPGKLADCQEKDPALCEIYLVEGDSAGGSAKQGRDRKFQAILPLKGKI 350

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDADVDGAHIASLL 555
           LNV  A  +++  + +I  L+ ALG            LRY ++IIMTDADVD +HI +LL
Sbjct: 351 LNVERARFDRMLESDEIGTLITALGTGIGQDEFNAGKLRYHRIIIMTDADVDDSHIRTLL 410


>gi|42541275|gb|AAS19517.1| DNA gyrase subunit B [Photobacterium leiognathi]
 gi|42541277|gb|AAS19518.1| DNA gyrase subunit B [Photobacterium leiognathi]
 gi|86651907|gb|ABD14441.1| DNA gyrase beta subunit [Photobacterium leiognathi]
 gi|86651913|gb|ABD14444.1| DNA gyrase beta subunit [Photobacterium leiognathi]
 gi|86651917|gb|ABD14446.1| DNA gyrase beta subunit [Photobacterium leiognathi]
 gi|86651919|gb|ABD14447.1| DNA gyrase beta subunit [Photobacterium leiognathi]
 gi|86651933|gb|ABD14449.1| DNA gyrase beta subunit [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|86651937|gb|ABD14451.1| DNA gyrase beta subunit [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|86651939|gb|ABD14452.1| DNA gyrase beta subunit [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|86651941|gb|ABD14453.1| DNA gyrase beta subunit [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|86651943|gb|ABD14454.1| DNA gyrase beta subunit [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|86651945|gb|ABD14455.1| DNA gyrase beta subunit [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|86651949|gb|ABD14457.1| DNA gyrase beta subunit [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|86651951|gb|ABD14458.1| DNA gyrase beta subunit [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|86651953|gb|ABD14459.1| DNA gyrase beta subunit [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|86651955|gb|ABD14460.1| DNA gyrase beta subunit [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|86651957|gb|ABD14461.1| DNA gyrase beta subunit [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|86651959|gb|ABD14462.1| DNA gyrase beta subunit [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|86651961|gb|ABD14463.1| DNA gyrase beta subunit [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|86651963|gb|ABD14464.1| DNA gyrase beta subunit [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|86651965|gb|ABD14465.1| DNA gyrase beta subunit [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|86651976|gb|ABD14466.1| DNA gyrase beta subunit [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|86651978|gb|ABD14467.1| DNA gyrase beta subunit [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|110264871|gb|ABG57011.1| DNA gyrase beta subunit [Photobacterium leiognathi]
 gi|110264885|gb|ABG57018.1| DNA gyrase beta subunit [Photobacterium leiognathi]
 gi|110264889|gb|ABG57020.1| DNA gyrase beta subunit [Photobacterium leiognathi]
          Length = 401

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 150/411 (36%), Positives = 236/411 (57%), Gaps = 15/411 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I  Q +  G+P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIKRGGHIHQQVYRHGVPDAPLAVIGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             ++ GTRI F P  + F +   F    L K  +  ++L+  V    + ++E        
Sbjct: 61  T-DETGTRIRFWPSEETFTN-IEFQYEILAKRLRELSFLNSGVSIKLNDERE------EG 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F + GG++ +++    N++ I  ++F   +E+      +VE A+ W +     I  
Sbjct: 113 KHDHFMYEGGIQAFVEHLNRNKTPIHPKVFHFDSERDD--GISVEVAMQWNDGFQESIFC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV + 
Sbjct: 171 FTNNIPQRDGGTHLAGFRGALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVISVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ +    +L++NP +A  +   +I+ S      R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKAAVESAMNEKLAEFLLENPADAKTVCTKIIDASRAREAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           KILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDA
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDA 401


>gi|155029073|dbj|BAF75422.1| DNA gyrase B [Amphibacillus sediminis]
          Length = 390

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 150/400 (37%), Positives = 220/400 (55%), Gaps = 14/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS  L V V R N I+   F +G+P + LE   +  +  G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTSLEVYVHRDNNIYFLGFEKGVPKNELEVIGET-DVTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           TR  F PDP+IF +   ++   L    +  A+L+  ++      ++   K      E+FY
Sbjct: 60  TRTHFTPDPEIFEETTVYNYDTLAYRLRELAFLNKGLRISIEDKRQEQVKR-----EDFY 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K+Y++   +++ ++    +  K E+      TVE AI + +    +I S+ N I 
Sbjct: 115 YEGGIKSYVEHLNQSKEVLHEPFYAEKEEQ----GITVEVAIQYNDGFASQIYSFANNIH 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGG HESG +  LTR I  YA      +    ++  DD+      I+S+   +P+F G
Sbjct: 171 TYEGGMHESGFKTGLTRVINDYARKNNLFKEADPNLTGDDVREGLTAIISIKHPDPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + + +   +    + F  +L +NP  A  ++E  +  S  RL  +K RE   R
Sbjct: 231 QTKTKLGNSETRTITDATFSELFSKFLFENPDTAKIIVEKGLMASRARLAAKKARELTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADCS   A  +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKI+NV 
Sbjct: 291 KGALEISNLPGKLADCSSRDATISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKIINVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +KI +N +I  ++ ALG      +     RY K++I
Sbjct: 351 KARLDKILSNNEIRSIITALGTGIGEDFDITKARYHKIVI 390


>gi|119221379|gb|ABL61893.1| GyrB [uncultured bacterium]
          Length = 416

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 150/418 (35%), Positives = 239/418 (57%), Gaps = 17/418 (4%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GG+FD++ Y++SGGLHGVG+SVVNALS+ L + + R   +++Q++  G P +P+ +    
Sbjct: 9   GGEFDDNAYKVSGGLHGVGVSVVNALSETLQLRIFRDGYVWTQEYHDGEPQAPIAR-GDA 67

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
             K G+ I F+P P++F D   F    + K  +  A+L+  V      ++   E      
Sbjct: 68  SRKHGSTIRFKPSPQVFADTH-FHFEIIAKRLRELAFLNSGVHITLLDERASRE------ 120

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
            E F++ GG++ +++    +++ I   + T   E+ G     VE A+ W E     +  +
Sbjct: 121 -EIFHYEGGIRAFVEHLNRSKTAIHPSVITLTGERDGI---VVEAALQWNEGYNEAVLCF 176

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +G R ALTR + +Y E      K  +++  +D       +LSV + +
Sbjct: 177 TNNIPQADGGTHLAGFRGALTRTLNQYMEREGILAKAKVAVSGEDAREGLTAVLSVKVPD 236

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F+ QTK KLVS + +  VE+++ +    +L ++P EA  +   ++E +  R   R+ R
Sbjct: 237 PKFSSQTKEKLVSSEVKPIVESSMSEALTIFLDEHPKEAQAIAAKIVEAARAREAARRAR 296

Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E   RK A+    LPGKLADC +      E+++VEGDSAGGSAKQ R+R +QA+LPL+GK
Sbjct: 297 ELTRRKGALDIANLPGKLADCQEKDPAQCEIYLVEGDSAGGSAKQGRDRRHQAILPLKGK 356

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIA 552
           ILNV  A  +++  + +I  L+ ALG     +  +   LRY +V+IMTDADVDG+HI 
Sbjct: 357 ILNVERARFDRMLLSDEIGTLITALGTGIGVEDFDVAKLRYHRVVIMTDADVDGSHIR 414


>gi|212659875|gb|ACJ37002.1| DNA gyrase subunit B [Xylella fastidiosa]
 gi|212659877|gb|ACJ37003.1| DNA gyrase subunit B [Xylella fastidiosa]
 gi|212659879|gb|ACJ37004.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 268

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 97/275 (35%), Positives = 159/275 (57%), Gaps = 13/275 (4%)

Query: 77  LFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTT 136
           L  EV+DN++DE +AG+A+ I V +  +G ++V DNGRGIPV+ H K    S  E+ILT 
Sbjct: 1   LVFEVVDNSVDEALAGHADSILVKIHIDGSVSVSDNGRGIPVDIH-KEEGVSAAEVILTV 59

Query: 137 LHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK 196
           LHAGGKFD+++Y++SGGLHGVG+SVVNALS+ L + + R    + Q++  G P  PL++ 
Sbjct: 60  LHAGGKFDDNSYKVSGGLHGVGVSVVNALSERLWLDIWRDGYHYQQEYVLGEPQYPLKQL 119

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
            +V  KRGT + F+P  +IF D   F    L K  +  ++L+  +K     ++       
Sbjct: 120 -EVSAKRGTTLRFKPAKEIFSD-VEFHYENLAKRLRELSFLNSGLKVSLIDERG------ 171

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
              +++F++ GG++++++   + ++ +   + +   E  G     V+ A+ W +     +
Sbjct: 172 EGRRDDFHYEGGIRSFVEHLAQLKTPLHPNVISVTGEHNGI---VVDAALQWTDAYQETM 228

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
             + N I   +GGTH +G R ALTR +  Y E   
Sbjct: 229 YCFTNNIPQKDGGTHLAGFRAALTRTLGNYIEQNG 263


>gi|61661950|gb|AAX51630.1| DNA gyrase beta subunit [Photobacterium iliopiscarium]
          Length = 403

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 151/412 (36%), Positives = 241/412 (58%), Gaps = 14/412 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I+ Q +  G+P +PL +   
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRNGHIYQQTYCNGVPQAPLAEVGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GTR+ F P  + F     F    L K  +  ++L+  +      ++E        
Sbjct: 61  -SDKTGTRLRFWPSEETFTTNLEFHYEILAKRLRELSFLNSGISIRLIDERE------EG 113

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +++ F + GG++ +++    N++ I  ++F   +E++     TVE A+ W +     +  
Sbjct: 114 KQDHFTYEGGIRAFVEHLNRNKTPIHQKVFHFDSERED--GITVEVAMQWNDGFQEGVYC 171

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD     V ++SV + 
Sbjct: 172 FTNNIPQRDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLVAVVSVKVP 231

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ + F  +L+++P +A  +   +I+ S      R+ 
Sbjct: 232 DPKFSSQTKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKA 291

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 292 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 351

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           KILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDAD
Sbjct: 352 KILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDAD 403


>gi|121729933|ref|ZP_01682355.1| Nqr2 subunit of na-translocating NADH-quinone reductase complex
           [Vibrio cholerae V52]
 gi|121628321|gb|EAX60828.1| Nqr2 subunit of na-translocating NADH-quinone reductase complex
           [Vibrio cholerae V52]
          Length = 186

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 72/191 (37%), Positives = 111/191 (58%), Gaps = 7/191 (3%)

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIA 552
           RGKILN     ++++  +Q++ D+  ALG    S   E  LRY KV I+ DAD DG HIA
Sbjct: 1   RGKILNTWEVSADQVLASQEVHDISVALGIDPDSDNLEA-LRYGKVCILADADSDGLHIA 59

Query: 553 SLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612
           +LL   F +    L++  H+++  PPL+RI  G +  YA D++ K+ +LE   +  K K+
Sbjct: 60  TLLCALFTRHFRALVKAGHVYVAMPPLYRIDCGKEVFYALDDQEKEGVLERLSQK-KAKV 118

Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERF 671
            + RFKGLGEM   QL+ET MD N R L+++ I+      + T + ++ L+G K AD+R 
Sbjct: 119 NVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDD----AEATDEMMDMLLGKKRADDRR 174

Query: 672 KFIQERASFID 682
            ++Q      +
Sbjct: 175 AWLQRNGDMAE 185


>gi|148971313|gb|ABR20194.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 434

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 166/445 (37%), Positives = 229/445 (51%), Gaps = 31/445 (6%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD   Y+I+GGLHGVG+ VVNALS  L   V R   I+ +KF +G+P 
Sbjct: 1   EVIMTVLHAGGKFDKKVYKITGGLHGVGVHVVNALSRLLIAVVKRPEGIYYEKFEKGVPS 60

Query: 191 SPLE-----KKEKVRNK------------RGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
             L+                          G  I F PDP+I           + +  + 
Sbjct: 61  GGLQFVEKGSWGNTGEPEIDSIEPKLAQDHGLIIKFYPDPEILRTLISLTRWSI-ERIKE 119

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            A+L+ +V      ++  A        E  +F GGL  ++    E    I  E      E
Sbjct: 120 LAFLNPQVAISIKDERINA-------SEVMHFEGGLSQFVDYLGEGHQSILKEPIYNLEE 172

Query: 294 KKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK 352
            + T    VE+A  +    +  + SY N I T EGGTH +G R  L+R ++ YA+     
Sbjct: 173 TEDT---VVEFAFLYNNSTSEIMQSYVNNISTVEGGTHVTGFRAGLSRAVQDYAKNHDLV 229

Query: 353 RAISII-SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           + +  I SDD+    V +L V +  P+F GQTK+KL +   +  V+++    F  Y    
Sbjct: 230 KGVESIVSDDVREGLVAVLHVKVIAPQFEGQTKSKLGNSTVRGIVQSSTEKYFKSYFESF 289

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P  A  ++  VI  +  R   R  +E V RK+A+    LPGKLADCS +     EL+IVE
Sbjct: 290 PNIAQNIVRRVIMAAAAREASRNAKELVRRKSALESGNLPGKLADCSSSDPAKAELYIVE 349

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530
           G+SAGGSAKQAR R  QA+LPLRGKILNV  A   K   N++I +L+  +G   +     
Sbjct: 350 GESAGGSAKQARTRDYQAILPLRGKILNVEKAADIKTLANEEIRNLITVMGTNIKDSLDL 409

Query: 531 EDLRYEKVIIMTDADVDGAHIASLL 555
             LRY K+IIMTDADVDG+HI +LL
Sbjct: 410 SKLRYGKIIIMTDADVDGSHIRTLL 434


>gi|148470272|gb|ABQ66083.1| gyrase b [uncultured bacterium]
          Length = 434

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 165/443 (37%), Positives = 228/443 (51%), Gaps = 31/443 (6%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD   Y+I+GGLHGVG+ VVNALS  L   V R   I+ +KF +G+P 
Sbjct: 1   EVIMTVLHAGGKFDKKVYKITGGLHGVGVHVVNALSRLLIAVVKRPEGIYYEKFEKGVPS 60

Query: 191 SPLE-----KKEKVRNK------------RGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
             L+                          G  I F PDP+IF D   F    + +  + 
Sbjct: 61  GGLQFVEKGSWGNTGEPEIDSIEPKLAQDHGLIIKFYPDPEIFEDLN-FSYQVIHERIKE 119

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            A+L+ +V      ++  A        E  +F GGL  ++    E    I  E      E
Sbjct: 120 LAFLNPQVAISIKDERINA-------SEVMHFEGGLSQFVDYLGEGHQSILKEPIYNLEE 172

Query: 294 KKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK 352
            + T    VE+   +    +  + SY N I T EGGTH +G R  L+R ++ YA+     
Sbjct: 173 TEDT---VVEFTFLYNNSTSEIMQSYVNNISTVEGGTHVTGFRAGLSRAVQDYAKNHDLV 229

Query: 353 RAISII-SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           + +  I SDD+    V +L V +  P+F GQTK+KL +   +  V+++       Y    
Sbjct: 230 KGVESIVSDDVREGLVAVLHVKVIAPQFEGQTKSKLGNSTVRGIVQSSTEKYLKSYFESF 289

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P  A  ++  VI  +  R   R  +E V RK+A+    LPGKLADCS +     EL+IVE
Sbjct: 290 PNIAQNIVRRVIMAAAAREASRNAKELVRRKSALESGNLPGKLADCSSSDPAKAELYIVE 349

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530
           G+SAGGSAKQAR R  QA+LPLRGKILNV  A   K   N++I +L+  +G   +     
Sbjct: 350 GESAGGSAKQARTRDYQAILPLRGKILNVEKAADIKTLANEEIRNLITVMGTNIKDSLDL 409

Query: 531 EDLRYEKVIIMTDADVDGAHIAS 553
             LRY K+IIMTDADVDG+HI +
Sbjct: 410 SKLRYGKIIIMTDADVDGSHIRT 432


>gi|7407138|gb|AAF61925.1| DNA gyrase B [Klebsiella pneumoniae subsp. pneumoniae]
          Length = 394

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 149/405 (36%), Positives = 229/405 (56%), Gaps = 16/405 (3%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD+++Y++SGGLHGVG+SVVNALS +L + + R N +  Q +  G+P +PL    +  +K
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDNKVHKQMYEHGVPQAPLAVTGET-DK 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT + F P  + F +   F+   L K  +  ++L+  V       ++  E       + 
Sbjct: 60  TGTMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------DH 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N 
Sbjct: 113 FHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNN 169

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F
Sbjct: 170 IPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKF 229

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREV 438
           + QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+        RR +   
Sbjct: 230 SSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMT 289

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILN
Sbjct: 290 RRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILN 349

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
           V  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 350 VEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMT 394


>gi|327409604|ref|YP_004347024.1| DNA topoisomerase II [Lausannevirus]
 gi|326784778|gb|AEA06912.1| DNA topoisomerase II [Lausannevirus]
          Length = 1090

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 124/639 (19%), Positives = 226/639 (35%), Gaps = 68/639 (10%)

Query: 64  MYIGG-TDEKALHHLFSEVIDNAMDEVIAG-----YANLIEVSLD-GNGFLTVVDNGRGI 116
           M  G     + L  ++ E++ N +D +            I+V+L+   G+ TV ++G  I
Sbjct: 41  MKFGSLVFPEGLERIYYEIVSNGIDNMFRSQKSGIPMKSIKVTLNRETGYCTVWNDGAHI 100

Query: 117 PVEN----------HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALS 166
           PVE           +         E+      A   +++S    + G +G+G  + +  S
Sbjct: 101 PVEKKEYSYTDELGNTTTSLLYPAELFFGYSKASTNYNDSEVRKTSGRNGLGAKLTSVFS 160

Query: 167 DELHVTVARQNT--IFSQKFSRGIPLSPLEKKEKVRNKRG-TRITFRPDPKIFGDKAGFD 223
               V         IF Q+F   +        EK    RG T I+F PD + FG     D
Sbjct: 161 KHFVVRCFDPEKKLIFKQEFFDNLTRRSEPVLEKCTKSRGWTEISFLPDFERFGLDGWSD 220

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
           A         +             +++ +        + F             L  +S  
Sbjct: 221 ALVSRFQKTMRDASLVTGLIVDFNEEKFSFSSLEEYAKLFSSEN------PNILALKSAD 274

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIK 343
           SS +   K           E ++++       T             H   + + L +   
Sbjct: 275 SSFVLLEKNVSDVVFESGQETSLSFVNGLEVFTGVH-----VNAWKH--AVLMPLLKAFN 327

Query: 344 KYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDP 403
              +     +A       L       L   + +PEF  QTK +L S   +          
Sbjct: 328 AKQKAEGKPKASMK---QLECFFHIFLVCDLDKPEFTSQTKHELASPVPKVC-------- 376

Query: 404 FDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHG 463
                ++       L    +     RL  RK ++  +     K     +LA   ++    
Sbjct: 377 ----KLKEEQVKKLLKWSFVPELSSRLDPRKLKKTKKLELNLKKVDDAQLAGTERSSE-- 430

Query: 464 TELFIVEGDSAG----GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
             L + EGDSA           ++R       L+GK+LN  +A ++ I  N+++  L   
Sbjct: 431 CTLILTEGDSAKTLAVSGFTSLQDREKYGAFALKGKVLNTTNATAKAIGKNKELEMLRVV 490

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           LG           LRY KV++M DAD DG HI +L+L FF++   +L+    +  +  P+
Sbjct: 491 LGLSKDLV---RTLRYGKVLLMCDADEDGKHIEALVLAFFHKFFPELLNNGFVVSLQTPI 547

Query: 580 FRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
            +      K ++ +  +  +  ++     G   + +   KGLG       ++      ++
Sbjct: 548 LKAFPTKNKELWFYSTKQFETWVQ--NNPGHKNLNVKYLKGLGSSKPEDGRKY---LAEQ 602

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
            LL+     D    +  + +  K   +KAD+R K++ E+
Sbjct: 603 KLLK--YVSDGTEKEYFELAFAK---SKADDRKKWLAEK 636


>gi|163256311|dbj|BAF95666.1| DNA gyrase subunit B [Bradyrhizobium sp. KO3F]
          Length = 275

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 103/285 (36%), Positives = 156/285 (54%), Gaps = 11/285 (3%)

Query: 82  IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141
           +DNA+DE +AG+A  ++V L+ +  +TV D+GRGIPV+ H K    S  E+I+T LHAGG
Sbjct: 1   VDNAIDEALAGHATRVDVVLNADNSVTVRDDGRGIPVDIH-KGEGISAAEVIMTQLHAGG 59

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD ++Y++SGGLHGVG+SVVNALS +L + + R +     +F+ G  ++PL+       
Sbjct: 60  KFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHGDAVAPLKVVGDAPG 119

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           +RGT +TF   P+ F +   +D A L    +  A+L+  V    S  +   EK      E
Sbjct: 120 RRGTEVTFLASPETFKN-IEYDFATLEHRLRELAFLNSGVNIILSDMRHAVEKR-----E 173

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCN 320
           E ++ GG++ +++    N+  I       + E  G     VE A+ W +   E    + N
Sbjct: 174 EMHYSGGVEEFVKYLDRNKKAIVPAPIMVRAEANGI---GVEAALWWNDSYHENVLCFTN 230

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
            I   +GGTH +G R ALTR +  YAE    K  I++  DD    
Sbjct: 231 NIPQRDGGTHLAGFRGALTRQVNGYAEANAKKEKIALTGDDCREG 275


>gi|148470256|gb|ABQ66075.1| gyrase b [uncultured bacterium]
          Length = 418

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 157/428 (36%), Positives = 225/428 (52%), Gaps = 13/428 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFDN+TY++SGGLHGVG+SVVNALS+ L + + ++   F Q + +GIP 
Sbjct: 1   EVIMTVLHAGGKFDNNTYKVSGGLHGVGVSVVNALSETLFLDIDQKGNRFRQIYHKGIPE 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           SPL           T I F PD  I      F    L    +   YL+  +         
Sbjct: 61  SPLAITGTSETTG-TSIRFYPDLTIMET-DAFSFDVLAHRFRELGYLNPALTII------ 112

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
              +     +E F+  GG++++L    EN+  I   +   K+   G+    + +      
Sbjct: 113 -LREEETLREEVFHDEGGIRSFLLFVNENKRTIHDPLTFRKSFDNGST-FEISFQYQDTT 170

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
           +   + SY N I T EGGTH  G R ALTR + ++ +     +   +  +D+      I+
Sbjct: 171 DAETLLSYVNNIPTREGGTHVRGFRAALTRVVNRFIKDKNLNKGEEVRGEDIREGLSAIV 230

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           S+ I  P+F GQTK KL S      +E  L +  +    +    A  + +  I  ++ R 
Sbjct: 231 SIKIPNPQFEGQTKAKLGSSWVSGAMETFLAEALEDAFEKQGTVARAIADKAILSAQARE 290

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK RE   RK  +    LPGKLADC +N    +EL+IVEGDS GGSAKQ R+R  QA+
Sbjct: 291 AARKARELTKRKNVLEGSNLPGKLADCQENDPAKSELYIVEGDSVGGSAKQGRDRRFQAI 350

Query: 490 LPLRGKILNVASAG-SEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVD 547
           LPL+GKILNV  +    K   + ++  L+ A+GC   ++      LRY K+IIMTDADVD
Sbjct: 351 LPLKGKILNVEKSKGVGKFITHDEVRALITAVGCGLGAEEFSLKNLRYHKIIIMTDADVD 410

Query: 548 GAHIASLL 555
           G+HI +LL
Sbjct: 411 GSHIRTLL 418


>gi|269799094|gb|ACZ43825.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 364

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 126/375 (33%), Positives = 204/375 (54%), Gaps = 16/375 (4%)

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V++  +G ++V D+GRGIPV+ H +    S  E+ILT LHAGGKFD+++Y++SGGLHG
Sbjct: 1   IVVTIHDDGSVSVSDDGRGIPVDIHEE-EGVSAAEVILTVLHAGGKFDDNSYKVSGGLHG 59

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+SVVNALS++L +T+ R   I +Q +  G+P  P+ +   V +  GT + F P  + F
Sbjct: 60  VGVSVVNALSEKLELTIFRHGKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFWPSHETF 118

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   F    L K  +  ++L+  V      ++E        + + F + GG+K ++   
Sbjct: 119 TNTL-FHYDILAKRLRELSFLNSGVSIKLIDERED------GKSDHFVYEGGIKAFVDYL 171

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
             N++ I+ + F    E++     TVE A+ W +     I  + N I   +GGTH +G R
Sbjct: 172 NVNKTPINKDAFHFSVERED--GITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFR 229

Query: 336 VALTRGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
            ALTR +  Y E     +  ++ +   DD       ++SV + +P+F+ QTK KLVS + 
Sbjct: 230 GALTRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEV 289

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPG 451
           +  VE A+ +    YL++NP EA+ ++  +I+        R+ +    RK A+    LPG
Sbjct: 290 KSAVEQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKARDMTRRKGALDLAGLPG 349

Query: 452 KLADCSQNIAHGTEL 466
           KLADC +     +EL
Sbjct: 350 KLADCQEKDPALSEL 364


>gi|2204065|dbj|BAA20472.1| gyrase B subunit [Acholeplasma laidlawii]
          Length = 183

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 72/181 (39%), Positives = 114/181 (62%), Gaps = 8/181 (4%)

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             QA++PLRGK+LNV  A  +K+ +N++I++L+QA+G     ++     RY K++IMTDA
Sbjct: 1   EFQAIMPLRGKVLNVEKARLDKMLSNKEIVNLIQAMGTGISDEFDITKARYHKIVIMTDA 60

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
           DVDGAHI +LLLTF ++ M  LI+  +++   PPL++I+ G    Y ++E+   ++L+  
Sbjct: 61  DVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYKISWGRNFQYRYNEQELNELLKTI 120

Query: 605 KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMG 664
           +     K  I R+KGLGEM A QL +T MD  KRTLL++++   +    +     + LMG
Sbjct: 121 E----TKPSIQRYKGLGEMDAEQLWDTTMDPAKRTLLQIKLEDAI----EADQVFSMLMG 172

Query: 665 T 665
            
Sbjct: 173 E 173


>gi|42541271|gb|AAS19515.1| DNA gyrase subunit B [Photobacterium kishitanii]
 gi|61661896|gb|AAX51603.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661900|gb|AAX51605.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|148793370|gb|ABR12749.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|148793382|gb|ABR12755.1| DNA gyrase beta subunit [Photobacterium kishitanii]
          Length = 403

 Score =  234 bits (596), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 152/412 (36%), Positives = 241/412 (58%), Gaps = 14/412 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R+  I  Q +  G+P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRKGHIHQQSYHHGVPDAPLAVIGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GTR+ F P  + F +   F    L K  +  ++L+  V      ++E        
Sbjct: 61  T-DKTGTRLRFWPSEETFTNNLEFQYEILAKRLRELSFLNSGVSIRLIDERE------EG 113

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +++ F + GG++ +++    N++ I  ++F   +E++     TVE A+ W +     +  
Sbjct: 114 KQDHFMYEGGIRAFVEHLNRNKTPIHQKVFHFDSERED--GITVEVAMQWNDGFQEGVYC 171

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD     V ++SV + 
Sbjct: 172 FTNNIPQRDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLVAVVSVKVP 231

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ + F  +L+++P +A  +   +I+ S      R+ 
Sbjct: 232 DPKFSSQTKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKA 291

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 292 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 351

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           KILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDAD
Sbjct: 352 KILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDAD 403


>gi|29652837|gb|AAO87388.1| DNA gyrase B [Listeria monocytogenes]
          Length = 198

 Score =  234 bits (596), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 87/194 (44%), Positives = 119/194 (61%), Gaps = 2/194 (1%)

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 7   RKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILN 66

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 67  VEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTL 126

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+K
Sbjct: 127 FYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYK 184

Query: 619 GLGEMLASQLKETA 632
           GLGEM   QL +T 
Sbjct: 185 GLGEMNPEQLWDTT 198


>gi|328349709|emb|CBY89162.1| GyrB protein [Flavobacterium sp. R-36668]
          Length = 412

 Score =  234 bits (596), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 163/417 (39%), Positives = 233/417 (55%), Gaps = 15/417 (3%)

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA-RQNTIFSQKFSRGIPLSPL 193
           T + AGGKFD  +Y++SGGLHGVG+SVVNALS  L  TV      ++ Q++ RG  L P+
Sbjct: 1   TKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSKHLRATVHSSDGKVYEQEYERGKALYPV 60

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           ++  +    RGT +TF PDP IF     F    L    +  ++L+  +   ++  +E  +
Sbjct: 61  KQIGETTK-RGTIVTFYPDPIIFTQTVEFAYDTLSARMRELSFLNKGITITFTDKRE-VD 118

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
           K G    E F+   GLK Y++    NR  I S + +  +EK       VE A+ +     
Sbjct: 119 KDGNFVSEIFHSDEGLKEYVRYLDANREPIISHVISMNSEK---GEVPVEVALIYNTSYT 175

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGIL 370
             I +Y N I T EGGTH  G R  LTR +KKYA+ +    K    I  DD       I+
Sbjct: 176 ENIFAYVNNINTHEGGTHLQGFRTGLTRALKKYADSSGMLDKLKFEIAGDDFREGLTAII 235

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV + EP+F GQTKTKL + +    V  A+ +  ++YL +NP +A  +++ VI  ++ R 
Sbjct: 236 SVKVSEPQFEGQTKTKLGNREVVAPVSQAVSEMIENYLEENPNDARIIVQKVILAAQARH 295

Query: 431 RRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             +K RE+  RKT +    LPGKL+DCS+      E+++VEGDSAGG+AKQ R+R+ QA+
Sbjct: 296 AAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPTKCEVYLVEGDSAGGTAKQGRDRAFQAI 355

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY-----REEDLRYEKVIIM 541
           LPLRGKILNV  A   K+  N++I ++  ALG    ++          LRY KVIIM
Sbjct: 356 LPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTIGTEEDSKALNISKLRYHKVIIM 412


>gi|148470178|gb|ABQ66037.1| gyrase b [uncultured bacterium]
          Length = 433

 Score =  234 bits (596), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 164/442 (37%), Positives = 227/442 (51%), Gaps = 31/442 (7%)

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           +T LHAGGKFD   Y+I+GGLHGVG+ VVNALS  L   V R   I+ +KF +G+P   L
Sbjct: 3   MTVLHAGGKFDKKVYKITGGLHGVGVHVVNALSRLLIAVVKRPEGIYYEKFEKGVPSGGL 62

Query: 194 E-----KKEKVRNK------------RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAY 236
                                      G  I F PDP++F D   F    + +  +  A+
Sbjct: 63  RFVEKGSWGNTGEPEIDSIEPKLAQDHGLIIKFYPDPEVFEDLN-FSYQVIHERIKELAF 121

Query: 237 LSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG 296
           L+ +V      ++  A        E  +F GGL  ++    E    I  E      E + 
Sbjct: 122 LNPQVAISIKDERINA-------SEVMHFEGGLSQFVDYLGEGHQSILKEPIYNLEETED 174

Query: 297 THRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI 355
           T    VE+A  +    +  + SY N I T EGGTH +G R  L+R ++ YA+     + +
Sbjct: 175 T---VVEFAFLYNNSTSEIMQSYVNNISTVEGGTHVTGFRAGLSRAVQDYAKNHDLVKGV 231

Query: 356 SII-SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             I SDD+    V +L V +  P+F GQTK+KL +   +  V+++       Y    P  
Sbjct: 232 ESIVSDDVREGLVAVLHVKVIAPQFEGQTKSKLGNSTVRGIVQSSTEKYLKSYFESFPNI 291

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++  VI  +  R   R  +E V RK+A+    LPGKLADC+ +     EL+IVEG+S
Sbjct: 292 AQNIVRRVIMAAAAREASRNAKELVRRKSALESGNLPGKLADCTSSDPAKAELYIVEGES 351

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAKQAR R  QA+LPLRGKILNV  A   K   N++I +L+  +G   +       L
Sbjct: 352 AGGSAKQARTRDYQAILPLRGKILNVEKAADIKTLANEEIRNLITVMGTNIKDSLDLSKL 411

Query: 534 RYEKVIIMTDADVDGAHIASLL 555
           RY K+IIMTDADVDG+HI +LL
Sbjct: 412 RYGKIIIMTDADVDGSHIRTLL 433


>gi|119369998|gb|ABL68013.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  234 bits (596), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 157/428 (36%), Positives = 226/428 (52%), Gaps = 13/428 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHA GKFDN+TY++SGGLHGVG+SVVNALS+ L + + ++   F Q + +GIP 
Sbjct: 1   EVIMTVLHAVGKFDNNTYKVSGGLHGVGVSVVNALSETLFLDIDQKGNHFRQVYHKGIPE 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL           T I F PD  I      F    L    +   YL+  +         
Sbjct: 61  APLAITGTSETTG-TSIRFYPDLTIMET-DAFSFDVLAHRFRELGYLNPALTII------ 112

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
              +     +E F+  GG++++L    EN+  I   +   K+   G+    + +      
Sbjct: 113 -LREEETLREEVFHDEGGIRSFLLFVNENKRTIHDPLSFRKSFDNGST-FEISFQYQDTT 170

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
           +   + SY N I T EGGTH  G R ALTR + ++ +     +   +  +D+      I+
Sbjct: 171 DAETLLSYVNNIPTREGGTHVRGFRAALTRVVNRFIKDKNLNKGEEVRGEDIREGLSAIV 230

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           S+ I  P+F GQTK KL S      +E  L +  +    +    A  + +  I  ++ R 
Sbjct: 231 SIKIPNPQFEGQTKAKLGSSWVSGAMETFLAEALEDAFEKQGAVARAIADKAILSAQARE 290

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK RE   RK  +    LPGKLADC +N    +EL+IVEGDSAGGSAKQ R+R  QA+
Sbjct: 291 AARKARELTKRKNVLEGSNLPGKLADCQENDPAKSELYIVEGDSAGGSAKQGRDRRFQAI 350

Query: 490 LPLRGKILNVASAG-SEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVD 547
           LPL+GKILNV  +   EK   + ++  L+ A+GC   ++      LRY K+IIMTDADVD
Sbjct: 351 LPLKGKILNVEKSKGVEKFITHDEVRALITAVGCGLGAEEFSLKNLRYHKIIIMTDADVD 410

Query: 548 GAHIASLL 555
           G+HI +LL
Sbjct: 411 GSHIRTLL 418


>gi|29652897|gb|AAO87418.1| DNA gyrase B [Listeria monocytogenes]
          Length = 199

 Score =  234 bits (596), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 87/194 (44%), Positives = 119/194 (61%), Gaps = 2/194 (1%)

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 8   RKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILN 67

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 68  VEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTL 127

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+K
Sbjct: 128 FYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYK 185

Query: 619 GLGEMLASQLKETA 632
           GLGEM   QL +T 
Sbjct: 186 GLGEMNPEQLWDTT 199


>gi|198042678|gb|ACH81164.1| GyrB [Pseudoalteromonas spongiae]
          Length = 406

 Score =  234 bits (596), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 155/416 (37%), Positives = 238/416 (57%), Gaps = 15/416 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L +T+ R+  I  Q ++ G P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKLTIRREGKIHEQIYNMGEPA 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL    +     GT I F P  + F D   F    L K  +  ++L+  V    + +++
Sbjct: 61  APLAVVGE-SETNGTEIRFWPSSETFSDVN-FHYDILAKRLRELSFLNSGVSIILADERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   +K+ F + GG++ +++    N++ ++  +F   + ++     +VE A+ W +
Sbjct: 119 -------EKKDHFKYEGGIQAFVEFLNTNKTPVNQNVFHFTSTRE-EDGISVEVAMQWND 170

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAV 367
                I  + N     +GGTH +G R ALTR +  Y E      K   S   DD      
Sbjct: 171 GFQESIYCFTNNTPQRDGGTHLAGFRSALTRTLNTYMEKEGFNKKEKSSASGDDAREGLT 230

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE A+ +    YL++NP +A  ++  +I+   
Sbjct: 231 AVISVKVPDPKFSSQTKDKLVSSEVKSAVEQAMGEKLSEYLLENPQDAKIVVTKIIDAAR 290

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR N
Sbjct: 291 AREAARKAREMTRRKGAMDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKN 350

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIM 541
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  E LRY  +IIM
Sbjct: 351 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPEKLRYHSIIIM 406


>gi|55469459|gb|AAV52388.1| DNA gyrase subunit B [Photobacterium kishitanii]
 gi|61661858|gb|AAX51584.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661862|gb|AAX51586.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661864|gb|AAX51587.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661888|gb|AAX51599.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661890|gb|AAX51600.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661892|gb|AAX51601.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661894|gb|AAX51602.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661898|gb|AAX51604.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661952|gb|AAX51631.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|148793358|gb|ABR12743.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|148793362|gb|ABR12745.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|148793364|gb|ABR12746.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|148793368|gb|ABR12748.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|148793372|gb|ABR12750.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|148793374|gb|ABR12751.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|148793378|gb|ABR12753.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|148793380|gb|ABR12754.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|148793392|gb|ABR12760.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|148793398|gb|ABR12763.1| DNA gyrase beta subunit [Photobacterium kishitanii]
          Length = 403

 Score =  234 bits (596), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 151/412 (36%), Positives = 241/412 (58%), Gaps = 14/412 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R+  I  Q +  G+P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRKGHIHQQSYHHGVPDAPLAVIGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GTR+ F P  + F +   F    L K  +  ++L+  V      ++E        
Sbjct: 61  T-DKTGTRLRFWPSEETFTNNLEFQYEILAKRLRELSFLNSGVSIRLIDERE------EG 113

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +++ F + GG++ +++    N++ I  ++F   +E++     TVE A+ W +     +  
Sbjct: 114 KQDHFMYEGGIRAFVEHLNRNKTPIHQKVFHFDSERED--GITVEVAMQWNDGFQEGVYC 171

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD     + ++SV + 
Sbjct: 172 FTNNIPQRDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLIAVVSVKVP 231

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ + F  +L+++P +A  +   +I+ S      R+ 
Sbjct: 232 DPKFSSQTKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKA 291

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 292 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 351

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           KILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDAD
Sbjct: 352 KILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDAD 403


>gi|2853305|gb|AAC38148.1| gyrase B subunit [Vibrio alginolyticus]
          Length = 419

 Score =  233 bits (595), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 150/423 (35%), Positives = 234/423 (55%), Gaps = 15/423 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD++T ++SGGLHGV +SV+NALS+++ +T+ R   I +Q +  G P 
Sbjct: 1   EVIMTVLHAGGKFDDNTNKLSGGLHGVRVSVINALSEKVELTIHRGGHIHTQTYRHGEPA 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL       +K GT+I F P  + F +   F    L K  +  ++L+  V      ++E
Sbjct: 61  TPLAVVGDT-DKTGTQIRFWPSAETFSN-TEFHYDILAKRLRELSFLNSGVSIKLVDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + + F + GG++ ++     N++ I   +F   +E++     +VE A+ W +
Sbjct: 119 AD------KHDHFMYEGGIQAFVDHLNTNKTPIIERVFHFNSERED--GISVEVAMQWND 170

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R ALTR +  + +      K   +   DD      
Sbjct: 171 GFQENIFCFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLT 230

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +L++NP EA  +   +I  + 
Sbjct: 231 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIINAAR 290

Query: 428 ERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                 K RE+  RK A+    LPGK+ADC +      EL+IVEG+SAGGSAKQ RNR N
Sbjct: 291 ASEAAPKAREMTRRKGALDLAGLPGKVADCQEKDPALFELYIVEGESAGGSAKQGRNRKN 350

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY-EKVIIMTDAD 545
           QA+ PL+GKILNV  A  +K+ ++ +++ L+ ALGC         D      +IIMTDAD
Sbjct: 351 QAITPLKGKILNVEKARFDKMLSSLEVVTLITALGCGIGRDEDNPDKPRDHNIIIMTDAD 410

Query: 546 VDG 548
           V+ 
Sbjct: 411 VEA 413


>gi|159146570|gb|ABW90729.1| DNA gyrase beta subunit [Vibrio vulnificus]
          Length = 404

 Score =  233 bits (595), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 153/414 (36%), Positives = 233/414 (56%), Gaps = 15/414 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R     SQ +  G+P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVLLTIHRGGHTHSQTYRHGVPDAPLAIIGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
                GT + F P  + F +   F    L K  +  ++L+  V      ++E  +K    
Sbjct: 61  TEK-TGTTVRFWPSAQTFTN-IEFHYDILAKRLRELSFLNSGVSIKLFDEREEDKK---- 114

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
             + F + GG++ ++     N++ I  ++F   +E++      VE A+ W +     I  
Sbjct: 115 --DHFMYEGGIQAFVTHLNRNKTPIHEKVFHFNSERED--GIAVEVAMQWNDGFQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  Y +      K   +   DD       ++SV + 
Sbjct: 171 FTNNIPQRDGGTHLAGFRAALTRTLNSYMDKEGYSKKAKTATSGDDAREGLTAVVSVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE+ + D  + +L ++P EA  +   +I+        R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVESFMADKLNDFLAEHPSEAKTVCSKIIDAARAREAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVD 547
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVD
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVD 404


>gi|159894978|gb|ABX09835.1| DNA gyrase beta subunit [Vibrio sp. MWB21]
 gi|159894980|gb|ABX09836.1| DNA gyrase beta subunit [Vibrio sp. MWB28]
 gi|159894982|gb|ABX09837.1| DNA gyrase beta subunit [Vibrio sp. MWB29]
 gi|159894984|gb|ABX09838.1| DNA gyrase beta subunit [Vibrio sp. MWB30]
          Length = 404

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 155/414 (37%), Positives = 235/414 (56%), Gaps = 15/414 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVVGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             ++ GT+I F P  + F +   F    L K  +  ++L+  V      ++E        
Sbjct: 61  T-DQTGTQIRFWPSAETFTN-IEFHYDILAKRLRELSFLNSGVSIKLVDEREAD------ 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F F GG++ ++     N++ I  +IF    E++      VE A+ W +     I  
Sbjct: 113 KSDHFMFEGGIQAFVDHLNTNKTPIIEKIFHFDFERED--GIAVEVAMQWNDGFQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV + 
Sbjct: 171 FTNNIPQRDGGTHLAGFRAALTRTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ +    +L++NP EA  +   +I+        R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVD 547
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVD
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVD 404


>gi|110612699|gb|ABG78312.1| GyrB [uncultured bacterium]
          Length = 413

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 153/421 (36%), Positives = 238/421 (56%), Gaps = 15/421 (3%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD++ Y++SGGLHGVG+SVVNALS+ L + V RQ  +  Q++  G PL  + +  + 
Sbjct: 3   GGKFDDNAYKVSGGLHGVGVSVVNALSEHLWLEVHRQGRMHRQEYRMGEPLFAM-RDVEA 61

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
             +RGT + F P  ++F     F    L K  +  A+L+  ++   +  +   E+     
Sbjct: 62  SVRRGTTVRFLPSTEVFA-ITEFHYDILAKRLRELAFLNSGLRIELADLRPGQERE---- 116

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
            + F + GG+  ++Q  +E ++ +  ++ +      G     VE A+ W +     +  Y
Sbjct: 117 -DVFAYEGGICAFVQHLVELKTPLHPKVISLNYSADGI---EVEVALQWTDGYQEGVYCY 172

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIRE 376
            N I   +GGTH +G R ALTR + +Y E     +   +    DD+    + +LSV + +
Sbjct: 173 TNNIPQRDGGTHLTGFRAALTRTLTQYIERENLAKNAKVQLSGDDMREGLIAVLSVKVPD 232

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQ 435
           P+F+ QTK KLVS + +  VE  +    + +L++NP EA  +   V+         R+ +
Sbjct: 233 PKFSSQTKEKLVSSEVKTVVEQGVGQTLEEFLLENPGEARTIAGKVVGAARAREAARKAR 292

Query: 436 REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
               RK A+    LPGKLADC +     +ELF+VEGDSAGGSAKQ RNR NQAVLPL+GK
Sbjct: 293 EMTRRKGALDIAGLPGKLADCQEKDPALSELFLVEGDSAGGSAKQGRNRKNQAVLPLKGK 352

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           ILNV  A  +++  + ++  L+ ALGC   + +Y  + +RY ++II+TDADVDG+HI +L
Sbjct: 353 ILNVEKARFDRMLASAEVGTLITALGCGIGKDEYNPDKIRYHRIIIITDADVDGSHIRTL 412

Query: 555 L 555
           L
Sbjct: 413 L 413


>gi|213391526|gb|ACJ46504.1| gyrase B subunit [Shewanella sp. BSw20661]
          Length = 419

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 152/417 (36%), Positives = 236/417 (56%), Gaps = 16/417 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKFD+++Y++SGGLHGVG+SVVNALS +L +T+ R   ++ Q ++ G+P +P+++  
Sbjct: 8   HAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLQLTIRRAGKVYEQFYTHGVPDAPIKEIG 67

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
                 GT + F P    F +   F    L K  +  ++L+  V      +++  +    
Sbjct: 68  DAVK-TGTELRFWPSGDTFTN-VEFHFEILAKRVRELSFLNSGVGIRLVDERDGKD---- 121

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
              E F + GG+  ++     N++ I+ ++F    E++     TVE A+ W +     I 
Sbjct: 122 ---EFFKYEGGISAFVDYLNRNKTPINKDVFHFSHERED--GITVEVAMQWNDGYQENIF 176

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFI 374
            + N I   +GGTH +G R ALTR +  Y E      K   +   DD       ++SV +
Sbjct: 177 CFTNNIPQRDGGTHLAGFRGALTRNLNNYMEREGFNKKGKTNATGDDAREGLTAVISVKV 236

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRR 433
            +P+F+ QTK KLVS + +  VE  + +  + YL++NP +A  ++  +++        R+
Sbjct: 237 PDPKFSSQTKDKLVSSEVKSAVEQTMGEQLNDYLLENPADAKLIVGKIVDAARAREAARK 296

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            +    RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+
Sbjct: 297 AREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLK 356

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGA 549
           GKI NV  A  +K+ ++Q++  L+ ALGC   R +Y  +  RY  +IIMTDADVDGA
Sbjct: 357 GKISNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDGA 413


>gi|213021678|ref|ZP_03336125.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 205

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 90/207 (43%), Positives = 125/207 (60%), Gaps = 6/207 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + VTV R   +++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVTVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ESFFDS 176

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWS 246
             F  +RL+ + ++KA L    K+   
Sbjct: 177 PRFSVSRLMHVLKAKAVLCPGWKSLLK 203


>gi|110612679|gb|ABG78302.1| GyrB [uncultured bacterium]
          Length = 402

 Score =  233 bits (594), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 156/413 (37%), Positives = 234/413 (56%), Gaps = 16/413 (3%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD+++Y++SGGLHGVG+SVVNALS++L +TV R   I+ Q +  G+P +P+       
Sbjct: 1   GKFDDNSYKVSGGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGD-S 59

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
              GT I F+P  + F +   F    L K  +  ++L+  V      ++   E       
Sbjct: 60  ETTGTHIHFKPSAETFKNIH-FSWDILAKRIRELSFLNSGVGILLKDERSGKE------- 111

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
           E F + GGL+ +++    N++ ++S++F    ++       VE A+ W +     +  + 
Sbjct: 112 EFFKYEGGLRAFVEYLNTNKTPVNSQVFHFNVQRDD--GVGVEVALQWNDSFNENLLCFT 169

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH  G R +LTR +  Y E      K  ++   DD       I+SV + +P
Sbjct: 170 NNIPQRDGGTHLVGFRSSLTRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDP 229

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR- 436
           +F+ QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R 
Sbjct: 230 KFSSQTKDKLVSSEVKTAVEQEMNKYFADFLLENPSEAKAVVGKMIDAARAREAARKARE 289

Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKI
Sbjct: 290 MTRRKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKI 349

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDG 548
           LNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG
Sbjct: 350 LNVEKARFDKMISSQEVGTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDG 402


>gi|163256326|dbj|BAF95673.1| DNA gyrase subunit B [Bradyrhizobium sp. KO19A]
          Length = 265

 Score =  233 bits (594), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 101/275 (36%), Positives = 153/275 (55%), Gaps = 11/275 (4%)

Query: 79  SEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLH 138
            EV+DNA+DE +AG+A+ + V+L+ +  +TV D+GRGIPV  H K    S  E+I+T LH
Sbjct: 1   YEVVDNAIDEALAGHASRVLVTLNADNSVTVYDDGRGIPVGIH-KEEGVSAAEVIMTQLH 59

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD ++Y++SGGLHGVG+SVVNALS +L + + R +     +F+ G  ++PL+    
Sbjct: 60  AGGKFDQNSYKVSGGLHGVGVSVVNALSSKLALRIWRDDKEHYIEFAHGDAVAPLKVVGD 119

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
              KRGT +TF    + F +   +D A L    +  A+L+  V    S  +   EK    
Sbjct: 120 APGKRGTEVTFLASAETFKN-IEYDFATLEHRLRELAFLNSGVNIVLSDMRHAVEKR--- 175

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TS 317
             EE ++ GG++ +++    N+  I       ++E  G     VE A+ W +   E    
Sbjct: 176 --EEMHYSGGVEEFVKYLDRNKKAIVPAPIMVRSEANGI---GVEAALWWNDSYHENVLC 230

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK 352
           + N I   +GGTH +G R ALTR +  YA+    K
Sbjct: 231 FTNNIPQRDGGTHLAGFRGALTRQVNGYADANAKK 265


>gi|5739484|gb|AAD50497.1|AF174426_1 DNA topoisomerase IV ParE subunit [Acholeplasma laidlawii]
          Length = 208

 Score =  233 bits (594), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 80/210 (38%), Positives = 117/210 (55%), Gaps = 14/210 (6%)

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541
           RNR  QA+LPLRGK++N     +E I  N++I  ++  +G      +  +   Y KVIIM
Sbjct: 1   RNRRFQAILPLRGKVINTERTNTETILKNEEISTMIYTIGADFGEDFDIKKCNYNKVIIM 60

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT----KSVYAHDEEHK 597
           TDAD DGAHI +LLLTFF++ M  LIE   L++  PP +++T       ++VYA  +E  
Sbjct: 61  TDADDDGAHIQTLLLTFFFRYMRPLIEAGRLYIAQPPFYKVTYKKNKKEETVYAWSDEDL 120

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           ++ LE   ++      I+RFKGLGEM   QL ET M+   RTL++V I+    S      
Sbjct: 121 KETLESIGQN----YMITRFKGLGEMNFYQLWETTMNPESRTLIQVTIDDLNVS----DK 172

Query: 658 SINKLMGTKADERFKFIQERASFI--DDVG 685
            I+ LMG +   R ++I+    F   D+  
Sbjct: 173 HISVLMGDQVAPRREWIEANVDFEVTDEFD 202


>gi|88824773|gb|ABD52432.1| gyrase B [Yersinia enterocolitica]
          Length = 405

 Score =  233 bits (594), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 147/409 (35%), Positives = 230/409 (56%), Gaps = 16/409 (3%)

Query: 137 LHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK 196
           LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L + + R+  +  Q +  G+P +PL+  
Sbjct: 8   LHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVV 67

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
            +  ++ GT + F P  + F +   F      K  +  ++L+  V       +   E   
Sbjct: 68  GET-DQTGTTVRFWPSFQTFTNNTEFQYEIPAKRLRELSFLNSGVSIKLKDKRNDKE--- 123

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
               + F++ GG+K +++   +N++ I  ++F   T K       VE A+ W +     I
Sbjct: 124 ----DHFHYEGGIKAFVEYLNKNKNPIHPKVFYFSTMKDDI---GVEVALQWNDGFQENI 176

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH  G R A+TR +  Y +      K  IS   DD     + ++SV 
Sbjct: 177 YCFTNNIPQRDGGTHLVGFRTAMTRTLSSYMDKEGYSKKAKISATGDDAREGLIAVVSVK 236

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRR 432
           + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+        R
Sbjct: 237 VPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAAR 296

Query: 433 RKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           + +    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL
Sbjct: 297 KAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPL 356

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
           +GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 357 KGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIII 405


>gi|41387074|gb|AAS01491.1| GyrB [Bacillus sp. ES-027]
 gi|41387080|gb|AAS01494.1| GyrB [Bacillus sp. SAFN-003]
          Length = 393

 Score =  233 bits (594), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 148/402 (36%), Positives = 221/402 (54%), Gaps = 14/402 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS EL V V R   I  QK+ RGIP++ L+      +K G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F+PDP+IF +   ++   L    +  A+L+  +K      +E  +K      +EF+
Sbjct: 60  TITRFKPDPEIFKETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFH 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+K+Y++    ++  I  E    +  K G     VE A+ + E       S+ N I 
Sbjct: 114 YEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIH 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G + ALTR I  Y       +    ++  +D+      I+S+    P+F G
Sbjct: 171 TYEGGTHEVGFKTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNR 440
           QTKTKL + +A+   E+   + F+ +L++NP  A K+++   +        ++ +    R
Sbjct: 231 QTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV 
Sbjct: 291 KSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
            A  +KI +N ++  ++ A+G      +  E  RY KVIIMT
Sbjct: 351 KARLDKILSNDEVRTIITAIGTNIGGDFDIEKARYHKVIIMT 392


>gi|110612717|gb|ABG78321.1| GyrB [uncultured bacterium]
          Length = 411

 Score =  233 bits (594), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 156/421 (37%), Positives = 240/421 (57%), Gaps = 15/421 (3%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD++ Y++SGGLHGVG+SVVNALS+ L + V RQ  +  Q++  G PL  + +  + 
Sbjct: 1   GGKFDDNAYKVSGGLHGVGVSVVNALSEHLWLEVHRQGRMHRQEYRMGEPLFAM-RDVEA 59

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
             +RGT + F P  ++F     F    L K  +  A+L+  ++   +  +   E+     
Sbjct: 60  SVRRGTTVRFLPSTEVFA-ITEFHYDILAKRLRELAFLNSGLRIELADLRPGQERE---- 114

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
            + F + GG+  ++Q  +E ++ +   + +      G     VE A+ W +     +  Y
Sbjct: 115 -DVFAYEGGICAFVQHLVELKTPLHPNVISLNYRADGI---EVEVALQWTDGYQEGVYCY 170

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIRE 376
            N I   +GGTH +G R ALTR + +Y E     +   +    DD+    + +LSV + +
Sbjct: 171 TNNIPQRDGGTHLTGFRAALTRTLTQYIERENLAKNAKVQLSGDDMREGLIAVLSVKVPD 230

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F+ QTK KLVS + +  VE  +    + +L++NP EA  +   V++ +  R   RK R
Sbjct: 231 PKFSSQTKEKLVSSEVKTVVEQGVGQTLEEFLLENPGEARTIAGKVVDAARAREAARKAR 290

Query: 437 -EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
               RK A+    LPGKLADC +     +ELF+VEGDSAGGSAKQ RNR NQAVLPL+GK
Sbjct: 291 EMTRRKGALDIAGLPGKLADCQEKDPALSELFLVEGDSAGGSAKQGRNRKNQAVLPLKGK 350

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           ILNV  A  +++  + ++  L+ ALGC   + +Y  + +RY ++II+TDADVDG+HI +L
Sbjct: 351 ILNVEKARFDRMLASAEVGTLITALGCGIGKDEYNPDKIRYHRIIIITDADVDGSHIRTL 410

Query: 555 L 555
           L
Sbjct: 411 L 411


>gi|29652717|gb|AAO87328.1| DNA gyrase B [Listeria monocytogenes]
          Length = 187

 Score =  233 bits (593), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 87/189 (46%), Positives = 117/189 (61%), Gaps = 2/189 (1%)

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A 
Sbjct: 1   LEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKAR 60

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ M
Sbjct: 61  LDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYM 120

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
             L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+KGLGEM
Sbjct: 121 RPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYKGLGEM 178

Query: 624 LASQLKETA 632
              QL +T 
Sbjct: 179 NPEQLWDTT 187


>gi|86651935|gb|ABD14450.1| DNA gyrase beta subunit [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|110264873|gb|ABG57012.1| DNA gyrase beta subunit [Photobacterium leiognathi]
 gi|111380356|gb|ABH09611.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|111380358|gb|ABH09612.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|111380360|gb|ABH09613.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|111380362|gb|ABH09614.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|111380364|gb|ABH09615.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|111380366|gb|ABH09616.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|111380370|gb|ABH09618.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|111380372|gb|ABH09619.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|111380374|gb|ABH09620.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|111380376|gb|ABH09621.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|111380386|gb|ABH09626.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|111380388|gb|ABH09627.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|111380390|gb|ABH09628.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
 gi|111380392|gb|ABH09629.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
          Length = 400

 Score =  233 bits (593), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 149/410 (36%), Positives = 235/410 (57%), Gaps = 15/410 (3%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I  Q +  G+P +PL      
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIKRGGHIHQQVYRHGVPDAPLAVIGDT 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            ++ GTRI F P  + F +   F    L K  +  ++L+  V    + ++E        +
Sbjct: 61  -DETGTRIRFWPSEETFTN-IEFQYEILAKRLRELSFLNSGVSIKLNDERE------EGK 112

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
            + F + GG++ +++    N++ I  ++F   +E+      +VE A+ W +     I  +
Sbjct: 113 HDHFMYEGGIQAFVEHLNRNKTPIHPKVFHFDSERDD--GISVEVAMQWNDGFQESIFCF 170

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +
Sbjct: 171 TNNIPQRDGGTHLAGFRGALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVISVKVPD 230

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLRRRKQ 435
           P+F+ QTK KLVS + +  VE+A+ +    +L++NP +A  +   +I+ S      R+ +
Sbjct: 231 PKFSSQTKDKLVSSEVKAAVESAMNEKLAEFLLENPADAKTVCTKIIDASRAREAARKAR 290

Query: 436 REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
               RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GK
Sbjct: 291 EMTRRKGALDLAGLPGKLADCQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKGK 350

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           ILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDA
Sbjct: 351 ILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDA 400


>gi|301170788|dbj|BAJ12008.1| topoisomerase II [Samia cynthia walkeri]
          Length = 463

 Score =  233 bits (593), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 93/487 (19%), Positives = 182/487 (37%), Gaps = 36/487 (7%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRG-----IPLSPLEKKEKVRNKRGTRITFRPD 212
           G  + N  S +  +  A +      K + G          ++   K  +      +    
Sbjct: 1   GAKLCNIFSTKFTIETASKQYKKHFKQTWGSNMGKASEPKIKDSGKDDDFTKVTFSPDLA 60

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
                +      A + +     A  S  VK   + ++    K+              K Y
Sbjct: 61  KFKMDNLEDDIVALMSRRAYDVAASSPGVKVYLNGERLKINKF--------------KDY 106

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHES 332
           +   ++ +   + +      EK        E A+       +  S+ N+I T +GG H  
Sbjct: 107 VDLYIKGKEDENGQPLKVVYEK---VNERWEVALTLSNSGFQQVSFVNSIATTKGGKHVD 163

Query: 333 GLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
            +  ++ + + +     +NK  + I    +       ++  I  P F  QTK  +     
Sbjct: 164 TVADSIVKNVLE-VLKKKNKGGVIIKPFQVKNHMWVFINCLIVNPTFDSQTKENMTLQAK 222

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
               +  L + F   + ++ +  +       +   E ++   +++      ++ +     
Sbjct: 223 SFGSKCTLSEKFITAVTKSGLVESVWTWAKFKAQTELVKASGKKQSK----LKGIPKLED 278

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRN 509
             D     AH   L + EGDSA   A    +   R +  V PL+GK LNV  A  +++  
Sbjct: 279 ANDAGTKNAHLCTLILTEGDSAKTLAVSGLSVVGRDHYGVFPLKGKPLNVRDASHKQVLE 338

Query: 510 NQQIMDLVQALGCRTRSQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           N +I +L++ +G + + +Y   D    LRY KV+IM D D DG+HI  L++ F +    +
Sbjct: 339 NVEINNLIKIVGLQYKKKYNSVDDLKSLRYGKVMIMADQDQDGSHIKGLIINFIHHNWPE 398

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           L++   L     P+ + T+  K +  +     ++   E + H      I  +KGLG   +
Sbjct: 399 LLKLPFLEEFITPIVKATKKDKEISFYSLPEFEEWKNETENHHT--FNIKYYKGLGTSTS 456

Query: 626 SQLKETA 632
            + KE  
Sbjct: 457 KEAKEYF 463


>gi|33186735|emb|CAE12281.1| gyrase B subunit [Vibrio chagasii]
          Length = 404

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 157/414 (37%), Positives = 232/414 (56%), Gaps = 15/414 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +  G P SPL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYHHGEPQSPLAVIGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             ++ GT I F P  + F +   F    L K  +  ++L+  V      ++E        
Sbjct: 61  T-DQTGTEIRFWPSEETFSNVL-FHYDILAKRLRELSFLNSGVSIKLIDERE------ED 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F F GG++ ++     N++ I  +IF    E++     TVE A+ W +     I  
Sbjct: 113 KSDHFMFEGGIQAFVDHLNTNKTPIIQKIFHFDHERED--GITVEVAMQWNDGYQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV + 
Sbjct: 171 FTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE A+ +    +L++NP EA  +   +I         R+ 
Sbjct: 231 DPKFSSQTKDKLVSPEVKSAVEQAMGEKLSEFLIENPTEAKTVCTKIIDAARARDAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVD 547
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVD
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVD 404


>gi|86651947|gb|ABD14456.1| DNA gyrase beta subunit [Photobacterium leiognathi subsp.
           mandapamensis]
          Length = 402

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 150/412 (36%), Positives = 236/412 (57%), Gaps = 15/412 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I  Q +  G+P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIKRGGHIHQQVYRHGVPDAPLAVIGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             ++ GTRI F P  + F +   F    L K  +  ++L+  V    + ++E        
Sbjct: 61  T-DETGTRIRFWPSEETFTN-IEFQYEILAKRLRELSFLNSGVSIKLNDERE------EG 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F + GG++ +++    N++ I  ++F   +E+      +VE A+ W +     I  
Sbjct: 113 KHDHFMYEGGIQAFVEHLNRNKTPIHPKVFHFDSERDD--GISVEVAMQWNDGFQESIFC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV + 
Sbjct: 171 FTNNIPQRDGGTHLAGFRGALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVISVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ +    +L++NP +A  +   +I+ S      R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKAAVESAMNEKLAEFLLENPADAKTVCTKIIDASRAREAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           KILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMT AD
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTYAD 402


>gi|61661872|gb|AAX51591.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
 gi|61661874|gb|AAX51592.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
 gi|61661878|gb|AAX51594.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
 gi|61661922|gb|AAX51616.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
          Length = 402

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 150/411 (36%), Positives = 241/411 (58%), Gaps = 14/411 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I+ Q +  G+P +PL +   
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRNGHIYQQTYCHGVPQAPLAEVGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GTR+ F P  + F +   F    L K  +  ++L+  +      ++E        
Sbjct: 61  -SDKTGTRLRFWPSEETFTNNLEFHYEILAKRLRELSFLNSGISIRLIDERE------EG 113

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +++ F + GG++ +++    N++ I  ++F   +E++     TVE A+ W +     +  
Sbjct: 114 KQDHFTYEGGIRAFVEHLNRNKTPIHQKVFHFDSERED--GITVEVAMQWNDGFQEGVYC 171

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD     V ++SV + 
Sbjct: 172 FTNNIPQRDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLVAVVSVKVP 231

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ + F  +L+++P +A  +   +I+ S      R+ 
Sbjct: 232 DPKFSSQTKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKA 291

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 292 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 351

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           KILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDA
Sbjct: 352 KILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDA 402


>gi|34850111|emb|CAE46927.1| DNA gyrase subunit B [Vibrio sp. Mel 34]
          Length = 404

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 156/414 (37%), Positives = 232/414 (56%), Gaps = 15/414 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKF++++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +S G P +PL     
Sbjct: 1   AGGKFNDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GT I F P  + F +   F    L K  +  ++L+  V       +E        
Sbjct: 61  T-DKTGTEIRFWPSEETFTN-IEFHYDILAKRLRELSFLNSGVSIKLIDKRE------ED 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F + GG++ +++    N++ I  +IF   +E+      TVE A+ W +     I  
Sbjct: 113 KMDHFEYEGGIQAFVEHLNTNKTPIIQKIFHFDSERDD--GITVEVAMQWNDGYQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GG H +G R ALTR +  + +      K   S   DD       I+SV + 
Sbjct: 171 FTNNIPQRDGGAHLAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE+ + +    +L++NP EA  +   +I         R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVD 547
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVD
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVD 404


>gi|163256305|dbj|BAF95663.1| DNA gyrase subunit B [Bradyrhizobium sp. KO3C]
          Length = 273

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 103/283 (36%), Positives = 156/283 (55%), Gaps = 11/283 (3%)

Query: 82  IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141
           +DNA+DE +AG+A  ++V L+ +  +TV D+GRGIPV+ H K    S  E+I+T LHAGG
Sbjct: 1   VDNAIDEALAGHATRVDVVLNADNSVTVRDDGRGIPVDIH-KGEGISAAEVIMTQLHAGG 59

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD ++Y++SGGLHGVG+SVVNALS +L + + R +     +F+ G  ++PL+       
Sbjct: 60  KFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHGDAVAPLKVVGDAPG 119

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           +RGT +TF   P+ F +   +D A L    +  A+L+  V    S  +   EK      E
Sbjct: 120 RRGTEVTFLASPETFKN-IEYDFATLEHRLRELAFLNSGVNIILSDMRHAVEKR-----E 173

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCN 320
           E ++ GG++ +++    N+  I       + E  G     VE A+ W +   E    + N
Sbjct: 174 EMHYSGGVEEFVKYLDRNKKAIVPAPIMVRAEANGI---GVEAALWWNDSYHENVLCFTN 230

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLM 363
            I   +GGTH +G R ALTR +  YAE    K  I++  DD  
Sbjct: 231 NIPQRDGGTHLAGFRGALTRQVNGYAEANAKKEKIALTGDDCR 273


>gi|4996792|dbj|BAA78441.1| subunit B protein of DNA gyrase [bacterium rM2]
          Length = 321

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 110/328 (33%), Positives = 166/328 (50%), Gaps = 33/328 (10%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPN 126
           D   LHHL  EV+DN++DE +AGY + I V++  +G L+V+DNGRGIP          P 
Sbjct: 2   DGTGLHHLVFEVVDNSIDEALAGYCDDILVTIHADGSLSVIDNGRGIPTGVKMDDKHEPK 61

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV+R    +   FSR
Sbjct: 62  RSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSVWLKLTVSRDGQRYEIDFSR 121

Query: 187 GIP------------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           G              +SP+    +  +KRGT++ F PD +IF +   F    L K  +  
Sbjct: 122 GHVQNRLIEVVDGAEVSPMRVVGE-SDKRGTKVHFLPDQEIFKENFDFRYEILAKRLREL 180

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V+     +++  E         F   GG+K +++  +  + ++    F     +
Sbjct: 181 SFLNNGVRIRLKDERDGKEDD-------FSGTGGVKGFVEFIIGTKKVLHPTAFHAMGSR 233

Query: 295 KGT-------HRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYA 346
                         VE ++ W +   E    + N I   +GGTH +GLR A+TR I KY 
Sbjct: 234 PAETYGGIPGTEIGVEISMQWNDSYGEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYI 293

Query: 347 ELTQ--NKRAISIISDDLMISAVGILSV 372
           E      K  + +  DD+      +LSV
Sbjct: 294 EQNDLAKKAKVEVTGDDMREGLCAVLSV 321


>gi|84310500|gb|ABC55398.1| DNA gyrase subunit B [Bacillus subtilis]
 gi|84310512|gb|ABC55404.1| DNA gyrase subunit B [Bacillus subtilis]
 gi|84310514|gb|ABC55405.1| DNA gyrase subunit B [Bacillus subtilis]
 gi|84310518|gb|ABC55407.1| DNA gyrase subunit B [Bacillus subtilis]
 gi|84310520|gb|ABC55408.1| DNA gyrase subunit B [Bacillus subtilis]
 gi|84310524|gb|ABC55410.1| DNA gyrase subunit B [Bacillus subtilis]
          Length = 390

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 150/399 (37%), Positives = 222/399 (55%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            S Y++SGGLHGVG SVVNALS EL VTV R   I  Q + RG+P++ LE   +  +  G
Sbjct: 1   GSGYKVSGGLHGVGASVVNALSTELDVTVHRDGKIHRQTYKRGVPVTDLEIIGET-DHTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F PDP+IF +   +D   L    +  A+L+  V       +E  E+        ++
Sbjct: 60  TTTHFVPDPEIFSETTEYDYDLLANRVRELAFLTKGVNITIEDKREGQERKNE-----YH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K+Y++    ++ ++  E    + EK G    TVE A+ + +     I S+ N I 
Sbjct: 115 YEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNIN 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G +  LTR I  YA      +    ++  DD+      I+S+   +P+F G
Sbjct: 172 TYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + +A+   +       + ++++NP  A K+++  +  +  R+  +K RE   R
Sbjct: 232 QTKTKLGNSEARTITDTLFSTAMETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 292 KSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
            A  +KI +N ++  ++ ALG      +  E  RY KV+
Sbjct: 352 KARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVV 390


>gi|148793390|gb|ABR12759.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
          Length = 403

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 153/412 (37%), Positives = 242/412 (58%), Gaps = 14/412 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNAL +++ +T+ R   I+ Q +  G+P +PL +   
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALCEKVELTINRNGHIYQQTYCHGVPQAPLAEVGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GTR+ F P  + F +   F    L K  +  ++L+  +      ++E        
Sbjct: 61  -SDKTGTRLRFWPSEETFTNNLEFHYEILAKRLRELSFLNSGISIRLIDERE------EG 113

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +++ F + GG++ +++    N++ I  ++F   +E++     TVE A+ W +     +  
Sbjct: 114 KQDHFTYEGGIRAFVEHLNRNKTPIHQKVFHFDSERED--GITVEVAMQWNDGFQEGVYC 171

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD     V ++SV + 
Sbjct: 172 FTNNIPQRDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLVAVVSVKVP 231

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           +P+F+ QTK KLVS + +  VE+A+ + F  +L+++P +A  +   +I+ S  R   RK 
Sbjct: 232 DPKFSSQTKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKA 291

Query: 436 R-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           R    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 292 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 351

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           KILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDAD
Sbjct: 352 KILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDAD 403


>gi|328349759|emb|CBY89187.1| GyrB protein [Flavobacterium sp. R-41499]
          Length = 397

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 157/392 (40%), Positives = 225/392 (57%), Gaps = 9/392 (2%)

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T + AGGKFD  +Y++SGGLHGVG+SVVNALS  +  TV R   I+ Q++ RG  + P++
Sbjct: 1   TKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSVHMKSTVFRDGKIYEQEYERGKAIYPVK 60

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
           +  +  +KRGTR TF PD  IF     F    L    +  ++L+  +   ++  +E+ EK
Sbjct: 61  QVGET-DKRGTRQTFYPDDTIFTQTIEFSYDTLSARMRELSFLNKGITITFTDKREVDEK 119

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313
               + E F+   GLK Y++    NR  I S + +   EK       VE A+ +      
Sbjct: 120 G-EFKVEVFHSDEGLKEYIRYLDGNREPIISHVISMDHEK---GEIPVEVALIYNTSYTE 175

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILS 371
            I SY N I T EGGTH  G R  LTR +KKYA+ +    K    I  DD       I+S
Sbjct: 176 NIFSYVNNINTHEGGTHLQGFRSGLTRTLKKYADASGMLDKLKFEIAGDDFREGLTAIIS 235

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V + EP+F GQTKTKL + +    V  A+ +  ++YL +NP +A  +++ VI  ++ R  
Sbjct: 236 VKVAEPQFEGQTKTKLGNREVVSPVSQAVGEMLENYLEENPNDARIIIQKVILAAQARHA 295

Query: 432 RRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +K RE+  RKT +    LPGKL+DCS+      E+++VEGDSAGG+AKQ R+R+ QA+L
Sbjct: 296 AKKAREMVQRKTVMGGGGLPGKLSDCSEQDPARCEVYLVEGDSAGGTAKQGRDRAFQAIL 355

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           PLRGKILNV  A   K+  N++I ++  ALG 
Sbjct: 356 PLRGKILNVEKAMHHKVFENEEIRNIFTALGV 387


>gi|111380368|gb|ABH09617.1| DNA gyrase subunit B [Photobacterium leiognathi]
 gi|111380380|gb|ABH09623.1| DNA gyrase subunit B [Photobacterium leiognathi]
 gi|159146566|gb|ABW90727.1| DNA gyrase beta subunit [Photobacterium leiognathi subsp.
           mandapamensis]
          Length = 400

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 150/410 (36%), Positives = 235/410 (57%), Gaps = 15/410 (3%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I  Q +  G+P +PL      
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIKRGGHIHQQVYRHGVPDAPLAVIGDT 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            ++ GTRI F P  + F +   F    L K  +  ++L+  V    S ++E        +
Sbjct: 61  -DETGTRIRFWPSEETFTN-IEFQYEILAKRLRELSFLNSGVSIKLSDERE------EGK 112

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
            + F + GG++ +++    N++ I  ++F   +E+      +VE A+ W +     I  +
Sbjct: 113 HDHFMYEGGIQAFVEHLNRNKTPIHPKVFHFDSERDD--GISVEVAMQWNDGFQESIFCF 170

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +
Sbjct: 171 TNNIPQRDGGTHLAGFRGALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVISVKVPD 230

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLRRRKQ 435
           P+F+ QTK KLVS + +  VE+A+ +    +L++NP +A  +   +I+ S      R+ +
Sbjct: 231 PKFSSQTKDKLVSSEVKAAVESAMNEKLAEFLLENPADAKTVCTKIIDASRAREAARKAR 290

Query: 436 REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
               RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GK
Sbjct: 291 EMTRRKGALDLAGLPGKLADCQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKGK 350

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           ILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDA
Sbjct: 351 ILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDA 400


>gi|61661876|gb|AAX51593.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
 gi|61661880|gb|AAX51595.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
 gi|61661924|gb|AAX51617.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
 gi|61661926|gb|AAX51618.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
 gi|61661928|gb|AAX51619.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
 gi|61661930|gb|AAX51620.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
 gi|61661932|gb|AAX51621.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
          Length = 402

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 149/411 (36%), Positives = 241/411 (58%), Gaps = 14/411 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I+ Q +  G+P +PL +   
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRNGHIYQQTYCHGVPQAPLAEVGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GTR+ F P  + F +   F    L K  +  ++L+  +      ++E        
Sbjct: 61  -SDKTGTRLRFWPSEETFTNNLEFHYEILAKRLRELSFLNSGISIRLIDERE------EG 113

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +++ F + GG++ +++    N++ I  ++F   +E++     TVE A+ W +     +  
Sbjct: 114 KQDHFTYEGGIRAFVEHLNRNKTPIHQKVFHFDSERED--GITVEVAMQWNDGFQEGVYC 171

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD     + ++SV + 
Sbjct: 172 FTNNIPQRDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLIAVVSVKVP 231

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ + F  +L+++P +A  +   +I+ S      R+ 
Sbjct: 232 DPKFSSQTKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKA 291

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 292 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 351

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           KILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDA
Sbjct: 352 KILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDA 402


>gi|33186737|emb|CAE12282.1| gyrase B subunit [Vibrio kanaloae]
 gi|33186745|emb|CAE12286.1| gyrase B subunit [Vibrio splendidus]
          Length = 404

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 157/414 (37%), Positives = 232/414 (56%), Gaps = 15/414 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +S G P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GT I F P  + F +   F    L K  +  ++L+  V       +E        
Sbjct: 61  T-DKTGTEIRFWPSEETFTN-IEFHYDILAKRLRELSFLNSGVSIKLIDKRE------ED 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F + GG++ +++    N++ I  +IF   +E+      TVE A+ W +     I  
Sbjct: 113 KMDHFEYEGGIQAFVEHLNTNKTPIIQKIFHFDSERDD--GITVEVAMQWNDGYQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GG H +G R ALTR +  + +      K   S   DD       I+SV + 
Sbjct: 171 FTNNIPQRDGGAHLAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE+ + +    +L++NP EA  +   +I         R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVD 547
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVD
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVD 404


>gi|33186741|emb|CAE12284.1| gyrase B subunit [Vibrio tasmaniensis]
          Length = 404

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 155/414 (37%), Positives = 231/414 (55%), Gaps = 15/414 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKF++++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +S G P +PL     
Sbjct: 1   AGGKFNDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GT I F    + F +   F    L K  +  ++L+  V       +E        
Sbjct: 61  T-DKTGTEIRFWLSEETFTN-IEFHYDILAKRLRELSFLNSGVSIKLIDKRE------ED 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F + GG++ +++    N++ I  +IF   +E+      TVE A+ W +     I  
Sbjct: 113 KMDHFEYEGGIQAFVEHLNTNKTPIIQKIFHFDSERDD--GITVEVAMQWNDGYQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GG H +G R ALTR +  + +      K   S   DD       I+SV + 
Sbjct: 171 FTNNIPQRDGGAHLAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE+ + +    +L++NP EA  +   +I         R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVD 547
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVD
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVD 404


>gi|61661946|gb|AAX51628.1| DNA gyrase beta subunit [Photobacterium iliopiscarium]
 gi|61661948|gb|AAX51629.1| DNA gyrase beta subunit [Photobacterium iliopiscarium]
          Length = 402

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 150/411 (36%), Positives = 240/411 (58%), Gaps = 14/411 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I+ Q +  G+P +PL +   
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRNGHIYQQTYCNGVPQAPLAEVGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GTR+ F P  + F     F    L K  +  ++L+  +      ++E        
Sbjct: 61  -SDKTGTRLRFWPSEETFTTNLEFHYEILAKRLRELSFLNSGISIRLIDERE------EG 113

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +++ F + GG++ +++    N++ I  ++F   +E++     TVE A+ W +     +  
Sbjct: 114 KQDHFTYEGGIRAFVEHLNRNKTPIHQKVFHFDSERED--GITVEVAMQWNDGFQEGVYC 171

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD     V ++SV + 
Sbjct: 172 FTNNIPQRDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLVAVVSVKVP 231

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ + F  +L+++P +A  +   +I+ S      R+ 
Sbjct: 232 DPKFSSQTKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKA 291

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 292 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 351

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           KILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDA
Sbjct: 352 KILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDA 402


>gi|73747862|gb|AAZ82832.1| gyrase B subunit [Vibrio cyclitrophicus]
          Length = 404

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 157/414 (37%), Positives = 234/414 (56%), Gaps = 15/414 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +S G P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GT I F P  + F +   F    L K  +  ++L+  V      ++E        
Sbjct: 61  T-DKTGTEIRFWPSEETFTN-IEFHYDILAKRLRELSFLNSGVSIKLIDERE------ED 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F + GG++ +++    N++ I  +IF   +E++     TVE A+ W +     I  
Sbjct: 113 KMDHFEYEGGIQAFVEHLNTNKTPIIQKIFHFNSERED--GITVEVAMQWNDGYQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GG H +G R ALTR +  + +      K   S   DD       I+SV + 
Sbjct: 171 FTNNIPQRDGGAHLAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE+ + +    +L++NP EA  +   +I         R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVD 547
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVD
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVD 404


>gi|156394525|ref|XP_001636876.1| predicted protein [Nematostella vectensis]
 gi|156223983|gb|EDO44813.1| predicted protein [Nematostella vectensis]
          Length = 516

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 104/540 (19%), Positives = 187/540 (34%), Gaps = 57/540 (10%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           M D   D +   PP+ +          +          S    Y          LE + +
Sbjct: 1   MED--FDTYLPSPPKKKKEI-NTNSPSKNAGGKKRKRLSVERIYTKK-----TQLEHILL 52

Query: 61  RPGMYIGGTDE-----------------------KALHHLFSEVIDNAMDEVIAGY-ANL 96
           RP  YIG  +                          L  +F E++ NA D        + 
Sbjct: 53  RPDTYIGSVEPNKQNMFVYDDILEAIVNREITYVPGLFKIFDEILVNAADNKQRDPAMST 112

Query: 97  IEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
           I++ ++    F++V ++GRGIP+E H +        +I   L     +++   +++GG +
Sbjct: 113 IKIEINPEKNFISVWNDGRGIPIEMHKEH-QVYVPTMIFGQLLTSSNYNDDEKKVTGGRN 171

Query: 156 GVGISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEK-VRNKRGTRITFRPD 212
           G G  + N  S +  V  A       F Q ++  +  +     ++   NK  T ITF+PD
Sbjct: 172 GYGAKLCNIFSKKFSVETACLENKKRFKQVWTNNMGKAAEPVIKEFTSNKEYTCITFQPD 231

Query: 213 PKIFGDK--AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
            + F  +       A L +     A     V    +  K    K    +        G  
Sbjct: 232 LEKFKMETLDRDTVALLTRRAYDIAASVRGVSVILNGKKL---KVKTFKDYVQLCLKGAT 288

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330
              +   E     +                  E  +   ++  +  S+ N+I T +GGTH
Sbjct: 289 KDKEEDDEEEKKPTVVH--------EVVNNRWEVCVTVSDKGFQQASFVNSIATTKGGTH 340

Query: 331 ESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
            + +   +   +       +NK  ++I    +       ++  I  P F  QTK  +   
Sbjct: 341 VNYVTDQIVDKLMT-VIKKKNKGGLAIKPFQIKSHLWVFINCLIENPAFDSQTKENMTLR 399

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
                 +  L D F   +  + +    +      R +E+ +  K+   ++ + IR +   
Sbjct: 400 AKDFGSKCELSDKFIKAVQNSGVMENVMNWM---RFKEKAQLNKKCSGSKHSKIRGIPKL 456

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKI 507
               D     +    L + EGDSA   A    +   R    V PLRGK+LNV  A  +++
Sbjct: 457 DDANDAGGKNSRHCTLILTEGDSAKTLAISGLSIVGRDRYGVFPLRGKLLNVREASHKQV 516


>gi|42541297|gb|AAS19528.1| DNA gyrase subunit B [Photobacterium angustum]
          Length = 402

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 152/412 (36%), Positives = 236/412 (57%), Gaps = 15/412 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I+ Q +  G+P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIQRAGHIYQQVYRHGVPDAPLAVIGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
                GTRI F P    F +   F    L K  +  ++L+  V    S ++E        
Sbjct: 61  TEK-TGTRIRFWPSEDTFTN-IEFHYDILAKRLRELSFLNSGVSINLSDERED------G 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +++ F + GG++ +++    N++ I  ++F   +E+      +VE A+ W +     I  
Sbjct: 113 KEDHFMYEGGIRAFVEHLNRNKTPIHPKVFHFDSERDD--GISVEVAMQWNDGFQESIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV + 
Sbjct: 171 FTNNIPQRDGGTHLAGFRGALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVISVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ +    +L++NP +A  +   +I+ S      R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKAAVESAMNEKLAEFLLENPADAKTVCTKIIDASRAREAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           KILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDAD
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDAD 402


>gi|159146588|gb|ABW90738.1| DNA gyrase beta subunit [Vibrio cholerae]
          Length = 400

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 150/410 (36%), Positives = 232/410 (56%), Gaps = 15/410 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G+P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
              + GT + F P  + F +   F    L K  +  ++L+  V    + ++E  +K    
Sbjct: 61  T-ERTGTTVRFWPSAQTFTN-IEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK---- 114

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
             + F + GG++ ++     N++ I  ++F    E++     +VE A+ W +     I  
Sbjct: 115 --DHFMYEGGIQAFVTHLNRNKTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  Y +      K   +   DD       ++SV + 
Sbjct: 171 FTNNIPQRDGGTHLAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ +    +L +NP EA  +   +I+        R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTD 543
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTD
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTD 400


>gi|4996834|dbj|BAA78462.1| subunit B protein of DNA gyrase [bacterium rA10]
          Length = 301

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 101/307 (32%), Positives = 156/307 (50%), Gaps = 31/307 (10%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPN 126
           D   LHHL  EV+DN++DE +AG+ + I V++  +  ++V DNGRGIP          P 
Sbjct: 2   DGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHSDNSVSVTDNGRGIPTGVKMDDKHEPK 61

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV R+  +   +FSR
Sbjct: 62  RSASEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKMLRLTVRREGKVHVLEFSR 121

Query: 187 ------------GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
                       G+ +SP++      +KRGT + F PD  IF + + F    L K  +  
Sbjct: 122 GFVQNRLIETVDGVEVSPMKVTGDT-DKRGTEVHFLPDTDIFKENSDFHYEILAKRLREL 180

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V+     ++   E         F   GG++ +++   + ++++    F    E+
Sbjct: 181 SFLNNGVRIRLKDERTGKEDD-------FSGAGGVRGFVEFINKGKTVLHPHSFYAAGER 233

Query: 295 KGT-------HRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYA 346
                         VE A+ W     E    + N I   +GGTH +GLR A+TR I KY 
Sbjct: 234 PAETYGGIPGTHIGVEVAMQWNSGYSEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYI 293

Query: 347 ELTQNKR 353
           +     +
Sbjct: 294 DENDLAK 300


>gi|29652689|gb|AAO87314.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652695|gb|AAO87317.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652705|gb|AAO87322.1| DNA gyrase B [Listeria monocytogenes]
 gi|29653006|gb|AAO87472.1| DNA gyrase B [Listeria monocytogenes]
          Length = 199

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 88/201 (43%), Positives = 122/201 (60%), Gaps = 2/201 (0%)

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +R +    + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+L
Sbjct: 1   AKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAIL 60

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           P+RGKILNV  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAH
Sbjct: 61  PIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAH 120

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           I +LLLT FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  
Sbjct: 121 IRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDT 178

Query: 611 KIEISRFKGLGEMLASQLKET 631
           K  I R+KGLGEM   QL +T
Sbjct: 179 KYSIQRYKGLGEMNPEQLWDT 199


>gi|29652787|gb|AAO87363.1| DNA gyrase B [Listeria monocytogenes]
          Length = 200

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 88/201 (43%), Positives = 122/201 (60%), Gaps = 2/201 (0%)

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +R +    + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+L
Sbjct: 2   AKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAIL 61

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           P+RGKILNV  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAH
Sbjct: 62  PIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAH 121

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           I +LLLT FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  
Sbjct: 122 IRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDT 179

Query: 611 KIEISRFKGLGEMLASQLKET 631
           K  I R+KGLGEM   QL +T
Sbjct: 180 KYSIQRYKGLGEMNPEQLWDT 200


>gi|168070985|ref|XP_001787012.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162659945|gb|EDQ48174.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 371

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 116/375 (30%), Positives = 187/375 (49%), Gaps = 27/375 (7%)

Query: 85  AMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144
           A+DE +A Y   I++++  +G +TV+DNGRGIP   H       T +++ T LHAGGKF 
Sbjct: 1   AVDEHLAKYCTRIDITVHKDGSITVLDNGRGIPTGMHK--TGIPTPQVVYTILHAGGKFG 58

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR----------GIPLSPLE 194
            S Y+ SGGLHGVG SV NALS+ L V + R+  I   +F            G P++ LE
Sbjct: 59  GSGYKKSGGLHGVGASVTNALSEWLEVEIYREGKIHRMRFEYWQDKNGKEHVGEPVTGLE 118

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
                    GT++TF+PD ++F          L +  Q  A+L+  ++     ++     
Sbjct: 119 VLGNTNK-TGTKVTFKPDARVFQGGINVTYDTLAERLQEIAFLNSGLRIVLKDER----- 172

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313
                ++EF++ GG   +++   E + ++   I     ++       VE A+ +      
Sbjct: 173 --ADRQDEFFYEGGASQFVEFLNEGKDVMHDVIHFYGEKED----VEVEVALQYNAGYTE 226

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
            I S+ N+I T  GGTHE+G + A TR +  YA       ++  ++  +DL    + ++S
Sbjct: 227 TIASFVNSIPTRGGGTHETGFKTAYTRVMNDYARKNHLLKEKDKNLEGNDLREGMMAVIS 286

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V + E EF GQTK +L S  A+ TV+  + +    +L +NP  A  L++  I+ S+ R  
Sbjct: 287 VKMAEVEFVGQTKDQLGSASARSTVDAVVSEKMQIFLEENPQVAQTLIKKAIQASKAREA 346

Query: 432 RRKQREVNRKTAIRK 446
            RK R+  R    R 
Sbjct: 347 ARKARDDMRSGKKRS 361


>gi|156071392|dbj|BAF75803.1| DNA gyrase subunit B [Bradyrhizobium betae]
          Length = 278

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 103/287 (35%), Positives = 155/287 (54%), Gaps = 11/287 (3%)

Query: 82  IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141
           +DNA+DE +AG+A  ++V L+ +  +TV D+GRGIPV+ H K    S  E+I+T LHAGG
Sbjct: 1   VDNAIDEALAGHATRVDVILNADNSVTVRDDGRGIPVDIH-KGEGISAAEVIMTQLHAGG 59

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD ++Y++SGGLHGVG+SVVNALS +L + + R N     +F+ G  ++PL        
Sbjct: 60  KFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAHGDAVAPLVVVGDAPG 119

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           +RGT +TF+   + F +   +D A L    +  A+L+  V    S  +   EK      E
Sbjct: 120 RRGTEVTFQASTETFKN-IEYDFATLEHRLRELAFLNSGVNIALSDMRHAVEKR-----E 173

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCN 320
           E ++ GG++ +++    N+  I       + E  G     VE A+ W +   E    + N
Sbjct: 174 EMHYSGGVEEFVKYLDRNKKAIVPAPIMVRAEANGI---GVEAALWWNDSYHENVLCFTN 230

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAV 367
            I   +GGTH +G R ALTR +  YAE    K  I++  DD      
Sbjct: 231 NIPQRDGGTHLAGFRGALTRQVNGYAEAHAKKEKIALTGDDCREGLT 277


>gi|61676022|gb|AAX51676.1| gyrase subunit B [Neochlamydia hartmannellae]
          Length = 241

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 89/222 (40%), Positives = 126/222 (56%), Gaps = 12/222 (5%)

Query: 62  PGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENH 121
           PGMYIG T    LH L  EV+DN +DE +AGY   I V+L  +G  T+ DNGRGIPVE H
Sbjct: 1   PGMYIGDTSSNGLHQLVYEVVDNCIDEAMAGYCTAIYVTLHKDGSATIEDNGRGIPVEKH 60

Query: 122 PKFP-----NKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQ 176
            K       + S LE+++T LHAGGKFD +TY++SGGLHGVG+S V ALS ++ V V + 
Sbjct: 61  EKESLKQGRDVSALEVVMTILHAGGKFDKNTYKVSGGLHGVGVSCVCALSKKMVVQVFKN 120

Query: 177 NTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAY 236
           + +   +FS+G    P++   +    RGTRITF PD +I      FD   L K  +  A+
Sbjct: 121 SKVHEIEFSQGHVKKPIQIIGETTK-RGTRITFWPDDEIMNV-VEFDYDILAKRLRELAF 178

Query: 237 LSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
           L+  +   +  ++         +   F + GGL +++    E
Sbjct: 179 LNKGINIYFHDER-----NDEKDDVHFCYSGGLSSFVSYLNE 215


>gi|183987590|gb|ACC65785.1| topoisomerase II [Pleurotus djamor]
          Length = 735

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 110/583 (18%), Positives = 214/583 (36%), Gaps = 70/583 (12%)

Query: 154 LHGVGISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFR 210
            +G G  + N  S E  +  A       +SQ +++ +      K  K  R +  T++TF+
Sbjct: 1   RNGFGAKLANIYSHEFTIETADKTNEKKYSQTWTKNMTQVGKAKITKNGRGEEWTKVTFK 60

Query: 211 PDPKIFGDKAGFDAA--RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           PD   FG           L K     A     VK   + ++    K    ++    +   
Sbjct: 61  PDLARFGMTHIDPDTAGLLRKRVYDMAGTVKDVKVYLNDERL---KVKNFKQYVEMYLDS 117

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGG 328
                +      +   + I   +           E   A  +   +  S+ N+I T +GG
Sbjct: 118 AAADAKENSGGAAQAKASIIYEQIS------PRWEVGFATSDGTFQQVSFANSISTIKGG 171

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           TH + +   L +     A +T+  +  ++    +       ++  I  P F  QTK  L 
Sbjct: 172 THVNYISDQLAK--NLIAAITKKNKGAAVKPAQIKNHMWIFVNALIENPTFDSQTKETLT 229

Query: 389 SLDAQRTVENALRDPFDHYLVQNPI-----------EATKLLEWVIERSEERLRRRKQRE 437
              ++      L + F        +           + + +++ V+  ++ +  ++ ++ 
Sbjct: 230 LPASKFGSRPTLSEEFMKKGCVPIVLVVLSSYRLLVQKSSIIDQVLNWAKFKADQQIKKT 289

Query: 438 VNRKTAIRKLRLPGKLA-------------DCSQNIAHGTE---LFIVEGDSAGGSAKQA 481
              K          +               D +       E   L + EGDSA   A   
Sbjct: 290 DGSKRTRYFHSHSTEFVLNSIIVTGMAKLSDANNAGTKHAEKCTLILTEGDSAKSLAVAG 349

Query: 482 ---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY-REEDLRYEK 537
                R N  V PLRGK+LNV  A  +++  N++I ++ + +G +   +Y     LRY +
Sbjct: 350 LAVVGRDNFGVFPLRGKLLNVREARHDQVMKNEEIQNIKKIMGLQHNKEYSNVSSLRYGR 409

Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK-HLFLISPPLFR------------ITQ 584
           ++IMTD D DG+HI  LL+ F       L++    L     P+ R            +T+
Sbjct: 410 LMIMTDQDHDGSHIKGLLINFLDHFYPSLLKIPEFLVEFVTPIVRVSIFHQCQIPPHVTK 469

Query: 585 GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644
           G++          ++ +E        K     +KGLG    +  +E     +K  +    
Sbjct: 470 GSQRKNFFTIPEYEQWIESTPDS--KKWTAKYYKGLGTSSDADAREYFSKMSKHMIPFAT 527

Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQE--RASFID-DV 684
           +  +   L     + +K    KAD+R  ++++    +++D ++
Sbjct: 528 MEDEERPL--IDLAFSK---KKADDRKDWLRQFKPGTYLDHNL 565


>gi|55469461|gb|AAV52389.1| DNA gyrase subunit B [Photobacterium kishitanii]
 gi|55469463|gb|AAV52390.1| DNA gyrase subunit B [Photobacterium kishitanii]
 gi|55469465|gb|AAV52391.1| DNA gyrase subunit B [Photobacterium kishitanii]
 gi|55469467|gb|AAV52392.1| DNA gyrase subunit B [Photobacterium kishitanii]
 gi|55469479|gb|AAV52398.1| DNA gyrase subunit B [Photobacterium kishitanii]
 gi|61661860|gb|AAX51585.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661902|gb|AAX51606.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661908|gb|AAX51609.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661912|gb|AAX51611.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661920|gb|AAX51615.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|110264833|gb|ABG56992.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|110264835|gb|ABG56993.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|110264837|gb|ABG56994.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|110264839|gb|ABG56995.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|110264861|gb|ABG57006.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|110264865|gb|ABG57008.1| DNA gyrase beta subunit [Photobacterium kishitanii]
          Length = 402

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 151/411 (36%), Positives = 240/411 (58%), Gaps = 14/411 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R+  I  Q +  G+P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRKGHIHQQSYHHGVPDAPLAVIGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GTR+ F P  + F +   F    L K  +  ++L+  V      ++E        
Sbjct: 61  T-DKTGTRLRFWPSEETFTNNLEFQYEILAKRLRELSFLNSGVSIRLIDERE------EG 113

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +++ F + GG++ +++    N++ I  ++F   +E++     TVE A+ W +     +  
Sbjct: 114 KQDHFMYEGGIRAFVEHLNRNKTPIHQKVFHFDSERED--GITVEVAMQWNDGFQEGVYC 171

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD     V ++SV + 
Sbjct: 172 FTNNIPQRDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLVAVVSVKVP 231

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ + F  +L+++P +A  +   +I+ S      R+ 
Sbjct: 232 DPKFSSQTKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKA 291

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 292 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 351

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           KILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDA
Sbjct: 352 KILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDA 402


>gi|42541295|gb|AAS19527.1| DNA gyrase subunit B [Photobacterium damselae]
          Length = 403

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 152/412 (36%), Positives = 236/412 (57%), Gaps = 15/412 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I  Q +  G+P +PLE    
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIYRHGHIHRQIYRHGVPQAPLEVIGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             ++ GT I F P  + F +   F    L K  +  ++L+  V    + ++E        
Sbjct: 61  T-DRTGTTIRFWPSSETFTN-TTFQYEILAKRLRELSFLNSGVSIKLNDERE------EG 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +++ F + GG++ +++    N++ I  ++F    E++     TVE A+ W +     I  
Sbjct: 113 KQDHFMYEGGIQAFVEHLNRNKTPIHQKVFHFNVERED--GITVEVAMQWNDGFQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  Y E      K   +   DD       ++SV + 
Sbjct: 171 FTNNIPQRDGGTHLAGFRGALTRTLNNYMEKEGYSKKAKAATSGDDAREGLTAVISVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLRRRK 434
           +P+F+ QTK KLVS + +  VE+ + +    +L++NP +A  +   +I+ S      R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVESTMGEKLGEFLLENPGDAKTVCTKIIDASRAREAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           KILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +II TDAD
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHSIIISTDAD 402


>gi|37725266|gb|AAR02323.1| gyrase B subunit [Aerococcus urinae]
 gi|37725268|gb|AAR02324.1| gyrase B subunit [Aerococcus urinae]
 gi|37725270|gb|AAR02325.1| gyrase B subunit [Aerococcus urinae]
          Length = 393

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 141/402 (35%), Positives = 215/402 (53%), Gaps = 13/402 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS +L V V R   I+ Q++SRG  +S L+   +  +K G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTKLRVEVYRDGKIYQQEYSRGHIVSDLKVVGQ-SDKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F  DP+IF D   +D   L K  +  A+L+  +       +E        ++  + 
Sbjct: 60  TVVNFVADPEIFTDTTDYDFQTLNKRVRELAFLNKGLHITLEDRREEDS-----QEVAYQ 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K Y+Q   EN+ ++  E    + +        VE A  +         S+ N I 
Sbjct: 115 YEGGIKEYVQYLNENKEILFEEPVYLEGQMDDI---EVEVAFQYTAGYHSNFMSFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHESG++ ALTR I  YA       ++  ++  +D+      I+S+    P+F G
Sbjct: 172 TFEGGTHESGIKTALTRTINDYARSQNLLKEKDDNLSGEDVREGLTLIVSIRHPNPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NR 440
           QTK KL + + +   +       + +L + P  A ++++  I  S+ R   ++ RE+  +
Sbjct: 232 QTKMKLGNSEVRTITDRLFGQHLEQFLYETPNIARQIVDKGILASKARQAAKRAREMTRK 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+ +    LPGKLADCS  +    ELFIVEG+SAGGSAK  R+R  QA+LP+RGKILNV 
Sbjct: 292 KSGLEISNLPGKLADCSSRVPEECELFIVEGNSAGGSAKLGRDRHFQAILPIRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
            A  ++I  N++I  L  A+G    + +     RY K++IMT
Sbjct: 352 KASMDRILANEEIRSLFTAMGTGWGNDFDVTKARYHKLVIMT 393


>gi|84310494|gb|ABC55395.1| DNA gyrase subunit B [Bacillus mojavensis]
 gi|115333967|gb|ABI94016.1| DNA gyrase subunit B [Bacillus axarquiensis]
 gi|115333969|gb|ABI94017.1| DNA gyrase subunit B [Bacillus axarquiensis]
 gi|115333971|gb|ABI94018.1| DNA gyrase subunit B [Bacillus malacitensis]
 gi|115333973|gb|ABI94019.1| DNA gyrase subunit B [Bacillus malacitensis]
          Length = 390

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 148/399 (37%), Positives = 221/399 (55%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            S Y++SGGLHGVG SVVNALS EL VTV R   I  Q ++RG+P+S LE   +  +  G
Sbjct: 1   GSGYKVSGGLHGVGASVVNALSTELDVTVHRDGKIHRQVYNRGVPVSDLEVIGET-DHTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F PDP+IF +   ++   L    +  A+L+  V       +E  E+        ++
Sbjct: 60  TTTHFVPDPEIFTETTEYEYDLLANRVRELAFLTKGVNITIEDKREGQERKNE-----YH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K+Y++    ++ ++  E    + EK G    TVE A+ + +     I S+ N I 
Sbjct: 115 YEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNIN 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G +  LTR I  YA      +    ++  DD+      I+S+   +P+F G
Sbjct: 172 TYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNR 440
           QTKTKL + +A+   +       + ++++NP  A K+++  +  +  R+  +K      R
Sbjct: 232 QTKTKLGNSEARTITDTLFSAALETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 292 KSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
            A  +KI +N ++  ++ ALG      +  E  RY KV+
Sbjct: 352 KARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVV 390


>gi|34850099|emb|CAE46921.1| DNA gyrase subunit B [Vibrio sp. Mel 35]
 gi|34850103|emb|CAE46923.1| DNA gyrase subunit B [Vibrio crassostreae]
          Length = 404

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 155/414 (37%), Positives = 234/414 (56%), Gaps = 15/414 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +S G P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GT I F P  + F +   F    L K  +  ++L+  V      ++E        
Sbjct: 61  T-DKTGTEIRFWPSEETFTN-IEFHYDILAKRLRELSFLNSGVSIKLIDERE------ED 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F + GG++ +++    N++ I  +IF   +E++     TVE A+ W +     I  
Sbjct: 113 KMDHFEYEGGIQAFVEHLNTNKTPIIQKIFHFNSERED--GITVEVAMQWNDGYQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GG H +G R ALTR +  + +      K   +   DD       I+SV + 
Sbjct: 171 FTNNIPQRDGGAHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAIVSVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE+ + +    +L++NP EA  +   +I         R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKTVCSKIIDAARARDAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVD 547
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  ++IMTDADVD
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIVIMTDADVD 404


>gi|198042688|gb|ACH81169.1| GyrB [Pseudoalteromonas sp. UST050418-010]
          Length = 404

 Score =  232 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 149/413 (36%), Positives = 234/413 (56%), Gaps = 16/413 (3%)

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFD+++Y++SGG HGVG+SVVNALS++L +TV R+  +  Q ++ G+P +PL 
Sbjct: 1   TVLHAGGKFDDNSYKVSGGFHGVGVSVVNALSEKLKLTVRREGKLHEQFYTMGVPDAPLA 60

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
                    GT + F P  + F +   F    L K  +  ++L+  V    + ++E    
Sbjct: 61  VIGD-SETTGTELRFWPSAETFTN-LDFHYDILAKRLRELSFLNSGVSIILNDERE---- 114

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313
               + + F + GG++ +++    N++ I   +F    E+      +VE ++ W +    
Sbjct: 115 --ENKSDHFKYEGGIQAFVEYINRNKTPIHKGVFHFTHER-VEDGISVEVSMQWNDAYQE 171

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYA----ELTQNKRAISIISDDLMISAVGI 369
            I  + N I   +GGTH +G R ALTR +  +        + K   +   DD       +
Sbjct: 172 NIYCFTNNIPQRDGGTHLAGFRSALTRTLNNFMEKEGFNKKAKTTSNATGDDAREGLTAV 231

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EE 428
           +SV + +P+F+ QTK KLVS + +  VE A+ + F  +L++NP++A  ++  +I+ S   
Sbjct: 232 ISVKVPDPKFSSQTKDKLVSSEVKSAVEQAMAEKFTEFLLENPVDAKIVVGKIIDASRAR 291

Query: 429 RLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
              R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA
Sbjct: 292 EAARKAREMTRRKGAMDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQA 351

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
           +LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  E LRY ++II
Sbjct: 352 ILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPEKLRYHRIII 404


>gi|55469469|gb|AAV52393.1| DNA gyrase subunit B [Photobacterium kishitanii]
 gi|55469471|gb|AAV52394.1| DNA gyrase subunit B [Photobacterium kishitanii]
 gi|55469473|gb|AAV52395.1| DNA gyrase subunit B [Photobacterium kishitanii]
 gi|55469475|gb|AAV52396.1| DNA gyrase subunit B [Photobacterium kishitanii]
 gi|55469477|gb|AAV52397.1| DNA gyrase subunit B [Photobacterium kishitanii]
 gi|61661904|gb|AAX51607.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661906|gb|AAX51608.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661910|gb|AAX51610.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661914|gb|AAX51612.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661916|gb|AAX51613.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661918|gb|AAX51614.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661934|gb|AAX51622.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661936|gb|AAX51623.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661938|gb|AAX51624.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661940|gb|AAX51625.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|61661942|gb|AAX51626.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|110264827|gb|ABG56989.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|110264829|gb|ABG56990.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|110264831|gb|ABG56991.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|110264845|gb|ABG56998.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|110264847|gb|ABG56999.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|110264855|gb|ABG57003.1| DNA gyrase beta subunit [Photobacterium kishitanii]
 gi|110264863|gb|ABG57007.1| DNA gyrase beta subunit [Photobacterium kishitanii]
          Length = 402

 Score =  232 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 150/411 (36%), Positives = 240/411 (58%), Gaps = 14/411 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R+  I  Q +  G+P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRKGHIHQQSYHHGVPDAPLAVIGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GTR+ F P  + F +   F    L K  +  ++L+  V      ++E        
Sbjct: 61  T-DKTGTRLRFWPSEETFTNNLEFQYEILAKRLRELSFLNSGVSIRLIDERE------EG 113

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +++ F + GG++ +++    N++ I  ++F   +E++     TVE A+ W +     +  
Sbjct: 114 KQDHFMYEGGIRAFVEHLNRNKTPIHQKVFHFDSERED--GITVEVAMQWNDGFQEGVYC 171

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD     + ++SV + 
Sbjct: 172 FTNNIPQRDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLIAVVSVKVP 231

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ + F  +L+++P +A  +   +I+ S      R+ 
Sbjct: 232 DPKFSSQTKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKA 291

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 292 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 351

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           KILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDA
Sbjct: 352 KILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDA 402


>gi|33186729|emb|CAE12278.1| gyrase B subunit [Vibrio gigantis]
 gi|33186731|emb|CAE12279.1| gyrase B subunit [Vibrio crassostreae]
          Length = 404

 Score =  232 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 156/414 (37%), Positives = 234/414 (56%), Gaps = 15/414 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +S G P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GT I F P  + F +   F    L K  +  ++L+  V      ++E        
Sbjct: 61  T-DKTGTEIRFWPSEETFTN-IEFHYDILAKRLRELSFLNSGVSIKLIDERE------ED 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F + GG++ +++    N++ I  +IF   +E++     TVE A+ W +     I  
Sbjct: 113 KMDHFEYEGGIQAFVEHLNTNKTPIIQKIFHFNSERED--GITVEVAMQWNDGYQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GG H +G R ALTR +  + +      K   +   DD       I+SV + 
Sbjct: 171 FTNNIPQRDGGAHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAIVSVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE+ + +    +L++NP EA  +   +I         R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKTVCSKIIDAARARDAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVD 547
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVD
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVD 404


>gi|209879055|ref|XP_002140968.1| DNA gyrase/topoisomerase IV, A subunit family protein
           [Cryptosporidium muris RN66]
 gi|209556574|gb|EEA06619.1| DNA gyrase/topoisomerase IV, A subunit family protein
           [Cryptosporidium muris RN66]
          Length = 1645

 Score =  232 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 88/400 (22%), Positives = 160/400 (40%), Gaps = 28/400 (7%)

Query: 297 THRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
                 E  I+  +   +  S+ N+I T  GGTH S +   L   I K    T+NK  I 
Sbjct: 411 EDHPKWEIVISESDGQFQHVSFVNSICTIRGGTHISYILDPLIAAILK-RVQTKNKGGID 469

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           I +  +       +   I  P F  QTK  L +  A+      L +        N +  +
Sbjct: 470 IKNHHVKSHIWIFIRCLIVNPSFDSQTKETLTTKVAKFGSTCQLSEKTI-----NSVVKS 524

Query: 417 KLLEWVIERSEERLRRRKQREVNRKTA------IRKLRLPGKLADCSQNIAHGTELFIVE 470
            ++E V+  ++ R     ++++           +  +       +     +    L + E
Sbjct: 525 PIVENVLMWAQMRQSMELKKKMKTNQKNSLSSRLLGIPKLEDANEAGGPNSRKCTLILTE 584

Query: 471 GDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           GDSA  S     +   R    V PL+GK+LNV  A  ++   N +I ++++ LG    ++
Sbjct: 585 GDSAKTSCLAGLSIVGRDYYGVFPLKGKLLNVREASFKQQIGNIEIQNILKILGISIGTK 644

Query: 528 YRE--EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE-QKHLFLISPPLFRITQ 584
           Y     +LRY  +++MTD D DG+HI  L++   +     L+     L     P+ +  +
Sbjct: 645 YENGPINLRYGSLMLMTDQDHDGSHIKGLIINLIHYYWPSLVHFNGFLKQFVTPIVKAKK 704

Query: 585 GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644
           G + +         K  +E   HG    +I  +KGLG     + KE   +    ++    
Sbjct: 705 GNQELSFFTLVEYDKWRKESNPHG---WKIKYYKGLGTSTDLEFKEYFTNIENHSIEFDW 761

Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQER--ASFID 682
            N      +    + +K    + ++R K+I+     ++ID
Sbjct: 762 YND--EDDEAIDMAFSK---KRTEDRKKWIESYQEGTYID 796



 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 102/306 (33%), Gaps = 40/306 (13%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD----------------------- 70
               ++  + Y          +E + +RP  YIG  +                       
Sbjct: 19  KKRAKTVEERYQKK-----TQIEHILLRPDTYIGSIEYHEQSLWVWDEINNKMVYKLINY 73

Query: 71  EKALHHLFSEVIDNAMDEVIAG-------YANLIEVSLDGNG-FLTVVDNGRGIPVENHP 122
              L+ +F E++ NA D                I+V +  +   +++ ++G GIPVE H 
Sbjct: 74  VPGLYKIFDEILVNAADVKAREISMINNERCTCIKVDISKSNKRISIFNDGDGIPVEIHK 133

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
           ++      E+I   L     +D++   ++GG +G G  + N  S E  V  A  N+    
Sbjct: 134 EY-GVYVPELIFGHLLTSDNYDDNEDRVTGGRNGFGAKLTNIFSTEFCVECADSNSCRLF 192

Query: 183 KFSR--GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
           K +    +             K   +I+F+PD   F +   FD   L  + +    ++G 
Sbjct: 193 KMTWFDNMSKKTDAIVTNYNGKSYVKISFKPDLDRFANMREFDGDILSLLYKRVYDIAGT 252

Query: 241 VKT-CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
                +     +  K        +     L T+     E  +  S +    +        
Sbjct: 253 SGVKVYLNGSLLPIKDFKSYTLLYLKSKYLNTHNNLSEEKTNSNSPDKENNEGIVDENSE 312

Query: 300 GTVEWA 305
             ++ A
Sbjct: 313 QAIKVA 318


>gi|198042696|gb|ACH81173.1| GyrB [Pseudoalteromonas sp. UST050418-023]
          Length = 399

 Score =  232 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 142/408 (34%), Positives = 229/408 (56%), Gaps = 15/408 (3%)

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L +T+ R+  ++ Q ++ G+P
Sbjct: 1   AEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKLTIRREGKLYEQFYTMGVP 60

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            +PL          GT + F P  + F +   F    L K  +  ++L+  V    + ++
Sbjct: 61  DAPLAAIGD-SETTGTELRFWPSAETFTN-LDFHYDILAKRLRELSFLNSGVSIILNDER 118

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
           E        + + F + GG++ +++    N++ +   +F    E++     +VE ++ W 
Sbjct: 119 E------ENKSDHFKYEGGIRAFVEYLNRNKTPVHKGVFHFTHERE-EDGISVEVSMQWN 171

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYA----ELTQNKRAISIISDDLMI 364
           +     I  + N I   +GGTH +G R ALTR +  Y        + K   +   DD   
Sbjct: 172 DAFQENIYCFTNNIPQRDGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDARE 231

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
               ++SV + +P+F+ QTK KLVS + +  VE A+ + F  +L++NP++A  ++  +I+
Sbjct: 232 GLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQAMAEKFTEFLLENPMDAKIVVGKIID 291

Query: 425 -RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483
                   R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RN
Sbjct: 292 AARAREAARKAREMTRRKGAMDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRN 351

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE 531
           R NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC         
Sbjct: 352 RKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNP 399


>gi|86651915|gb|ABD14445.1| DNA gyrase beta subunit [Photobacterium leiognathi]
          Length = 401

 Score =  232 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 148/409 (36%), Positives = 234/409 (57%), Gaps = 15/409 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I  Q +  G+P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIKRGGHIHQQVYRHGVPDAPLAVIGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             ++ GTRI F P  + F +   F    L K  +  ++L+  V    + ++E        
Sbjct: 61  T-DETGTRIRFWPSEETFTN-IEFQYEILAKRLRELSFLNSGVSIKLNDERE------EG 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F + GG++ +++    N++ I  ++F   +E+      +VE A+ W +     I  
Sbjct: 113 KHDHFMYEGGIQAFVEHLNRNKTPIHPKVFHFDSERDD--GISVEVAMQWNDGFQESIFC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV + 
Sbjct: 171 FTNNIPQRDGGTHLAGFRGALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVISVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ +    +L++NP +A  +   +I+ S      R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKAAVESAMNEKLAEFLLENPADAKTVCTKIIDASRAREAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
           KILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMT
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMT 399


>gi|212659912|gb|ACJ37012.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 267

 Score =  232 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 98/278 (35%), Positives = 160/278 (57%), Gaps = 13/278 (4%)

Query: 80  EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139
           EV+DN++DE +AG+A+ I V +  +G ++V DNGRGIPV+ H K    S  E+ILT LHA
Sbjct: 1   EVVDNSVDEALAGHADSILVKIHVDGSVSVSDNGRGIPVDIH-KEEGVSAAEVILTVLHA 59

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+++Y++SGGLHGVG+SVVNALS+ L + + R    + Q++  G P  PL++  +V
Sbjct: 60  GGKFDDNSYKVSGGLHGVGVSVVNALSERLWLDIWRDGYHYQQEYVLGDPQYPLKQL-EV 118

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
             KRGT + F+P  +IF D   F    L K  +  ++L+  +K     ++          
Sbjct: 119 SAKRGTTLRFKPAKEIFSD-VEFHYENLAKRLRELSFLNSGLKVSLIDERG------EGR 171

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
           +++F++ GG++++++   + ++ + S + +   E  G     V+ A+ W +     +  +
Sbjct: 172 RDDFHYEGGIRSFVEHLAQLKTPLHSNVISVTGEHNGI---VVDVALQWTDAYQETMYCF 228

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
            N I   +GGTH +G R ALTR +  Y E     R   
Sbjct: 229 TNNIPQKDGGTHLAGFRAALTRTLGNYIEQNGIARQAK 266


>gi|301605654|ref|XP_002932456.1| PREDICTED: DNA topoisomerase 2-beta [Xenopus (Silurana) tropicalis]
          Length = 1557

 Score =  232 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 86/433 (19%), Positives = 162/433 (37%), Gaps = 24/433 (5%)

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT 316
             + EE    GG   Y        S   +     K  K    +  +              
Sbjct: 168 NYDDEEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQVWMNLHFRRGNNYKRKL 227

Query: 317 SYCNTILTDEG------GTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
              N ++  +       G H   +   +   + +     +NK  +S+    +       +
Sbjct: 228 YPKNNLIIFKDIKSYCGGRHVDYVVDQIVSKLIE-VVKKKNKAGVSVKPFQVKNHVWVFV 286

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           +  I  P F  QTK  +         +  L + F      N      +L WV  +++   
Sbjct: 287 NCLIENPTFDSQTKENMTLQPKGFGSKCQLSEKFSK-AASNCGIVESILNWVKFKAQ--T 343

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQ 487
           +  K+    + + I+ +       D     +    L + EGDSA   A        R   
Sbjct: 344 QLNKKCSSVKHSKIKGIPKLDDANDAGGKHSLDCTLILTEGDSAKSLAVSGLGVIGRDRY 403

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED----LRYEKVIIMTD 543
            V PLRGKILNV  A  ++I  N +I ++++ +G + +  Y + +    LRY K++IMTD
Sbjct: 404 GVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYDDNESLKTLRYGKIMIMTD 463

Query: 544 ADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEE 603
            D DG+HI  LL+ FF+     L++   L     P+ + T+  + +  +     ++  ++
Sbjct: 464 QDQDGSHIKGLLINFFHHNWPSLLKHSFLEEFITPIVKATKNKQELSFYSIPEFEEWKKQ 523

Query: 604 FKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLM 663
                +   +I  +KGLG   + + KE   D ++  ++                + +K  
Sbjct: 524 --TENQKLWKIKYYKGLGTSTSKEAKEYFADMDRHRIIF--RYAGPEDDAAITLAFSK-- 577

Query: 664 GTKADERFKFIQE 676
             K D+R +++  
Sbjct: 578 -KKVDDRKEWLTN 589



 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 81/233 (34%), Gaps = 30/233 (12%)

Query: 16  SQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE---- 71
              ++ K +++     + +    S    Y          LE + +RP  YIG  +     
Sbjct: 24  DNQNASKKEETESNNKNDSSKKMSVERVYQKK-----TQLEHILLRPDTYIGSVETVTQS 78

Query: 72  ------------------KALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN-GFLTVVD 111
                               L+ +F E++ NA D        N I++S+D +   +++ +
Sbjct: 79  MWVYDEDVGMNCRDITYVPGLYKIFDEILVNAADNKQRDKNMNCIKISIDPDSNIISIWN 138

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171
           NG+GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V
Sbjct: 139 NGKGIPVVEH-KVEKMYVPALIFGQLLTSSNYDDEEKKVTGGRNGYGAKLCNIFSTKFTV 197

Query: 172 TVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
             A +    S K              K +      +    D K +      D 
Sbjct: 198 ETACKEYKHSFKQVWMNLHFRRGNNYKRKLYPKNNLIIFKDIKSYCGGRHVDY 250


>gi|164690653|dbj|BAF98610.1| gyrase B [Sporolactobacillus kofuensis]
          Length = 389

 Score =  232 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 151/400 (37%), Positives = 221/400 (55%), Gaps = 15/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS ++ V V R   ++ Q++ RG P++ L+       + G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTKMWVKVYRNGHVYYQEYHRGKPVADLKIIGD-SEQTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F PDP+IF D   F+   L    +  A+L+  ++      +E  +K      E F+
Sbjct: 60  TTTHFDPDPEIFTDTTTFEYETLRVRVRELAFLNKNIRISIEDRREEDKK------ETFH 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTIL 323
           + GG+++Y++    ++ +I   I   + EK G     VE A+ +          + N I 
Sbjct: 114 YEGGIRSYVEFLNRSKEVIHQPIDL-EGEKDGI---KVEIAMQYNSGFSSQLYSFANNIH 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G +VALTR I  YA   Q  +    ++  DD+      I+SV   +P+F G
Sbjct: 170 THEGGTHEYGFKVALTRVINDYARKNQFIKGSDANLTGDDVREGLTAIVSVKHPDPQFEG 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + + +   +    D F  +L++NP  A  +++  I  S  R   +K RE   R
Sbjct: 230 QTKTKLGNSEVRAITDTLFSDSFSRFLMENPDVARLIVDKGIIASRARTAAKKARELTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+++    LPGKLADCS   A  +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKI+NV 
Sbjct: 290 KSSLEVSSLPGKLADCSSKDASISELYIVEGDSAGGSAKQGRDRLYQAILPLRGKIINVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +KI +N +I  ++ ALG     ++  E  RY K+II
Sbjct: 350 KARLDKILSNAEIRAMITALGTGIGDEFNLEKARYHKIII 389


>gi|33146008|emb|CAD57648.2| DNA gyrase subunit B [Vibrio splendidus]
          Length = 404

 Score =  232 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 155/414 (37%), Positives = 230/414 (55%), Gaps = 15/414 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +  G P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GT I F P  + F +   F    L K  +  ++L+  V       +E        
Sbjct: 61  T-DKTGTEIRFWPSEETFTN-IEFHYDILAKRLRELSFLNSGVSIKLIDKRE------ED 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F + GG++ +++    N++ I  +IF   +E+      TVE A+ W +     I  
Sbjct: 113 KMDHFEYEGGIQAFVEHLNTNKTPIIQKIFHFDSERDD--GITVEVAMQWNDGYQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GG H +G R ALTR +  + +      K   S   DD       I+SV + 
Sbjct: 171 FTNNIPQRDGGAHLAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE+ + +    +L++NP EA  +   +I         R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVD 547
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIM DADVD
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMADADVD 404


>gi|110612637|gb|ABG78281.1| GyrB [uncultured bacterium]
 gi|110612661|gb|ABG78293.1| GyrB [uncultured bacterium]
          Length = 399

 Score =  232 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 153/411 (37%), Positives = 238/411 (57%), Gaps = 17/411 (4%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD+++Y++SGGLHGVG+SVVNALS+ELH+ + R   ++ Q +  G+P +PL    +  
Sbjct: 1   GKFDDNSYKVSGGLHGVGVSVVNALSEELHLLIKRHGKVYEQHYHHGVPDAPLAVTGEA- 59

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
           N  GT++ F+P  + F +   F    L K  +  ++L+  V      ++         ++
Sbjct: 60  NATGTQVWFKPSAQTFTNI-EFHYDILAKRLRELSFLNSGVGILLFDER-------TNKQ 111

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
           + F + GG+K +++    N++ I   +F+   EK      +VE A+ W +     I  + 
Sbjct: 112 DTFRYEGGIKAFVEHLNRNKTPIIPSVFSMSGEKDNI---SVELALQWNDSYQENIFCFT 168

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH +GLR ALTR +  Y E      K  ++   DD       +LSV + +P
Sbjct: 169 NNIPQRDGGTHLAGLRSALTRTLNNYIENEGHAKKAKVTTTGDDAREGLTAVLSVKVPDP 228

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-R 436
           +F+ QTK KLVS + +  VE+ + +  + YL++NP  A  ++  +IE +  R   R+   
Sbjct: 229 KFSSQTKDKLVSSEVKSVVESLVAEKLNDYLLENPTVAKTIVGKIIEAARAREAARRARD 288

Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              RK+A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ R+R  QA+LPL+GKI
Sbjct: 289 MTRRKSALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRDRKFQAILPLKGKI 348

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADV 546
           LNV  A  +K+ ++Q++  L+ ALGC     +Y  + +RY ++IIMTDADV
Sbjct: 349 LNVEKARFDKMLSSQEVATLITALGCGIGSDEYDPDKIRYHRIIIMTDADV 399


>gi|159146586|gb|ABW90737.1| DNA gyrase beta subunit [Vibrio cholerae]
          Length = 400

 Score =  232 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 152/410 (37%), Positives = 232/410 (56%), Gaps = 15/410 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I SQ +  G+P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
              + GT + F P  + F +   F    L K  +  ++L+  V    S ++E  +K    
Sbjct: 61  T-ERTGTTVRFWPSAQTFTN-IEFHYDILAKRLRELSFLNSGVSIKLSDEREEDKK---- 114

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
             + F + GG++ ++     N++ I  ++F    E++     +VE A+ W +     I  
Sbjct: 115 --DHFMYEGGIQAFVTHLNRNKTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  Y +      K   +   DD       ++SV + 
Sbjct: 171 FTNNIPQRDGGTHLAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ +    +L +NP EA  +   +I+        R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTD 543
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTD
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTD 400


>gi|84310490|gb|ABC55393.1| DNA gyrase subunit B [Bacillus subtilis subsp. spizizenii]
          Length = 390

 Score =  232 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 149/399 (37%), Positives = 220/399 (55%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            S Y++SGGLHGVG SVVNALS EL VTV R   I  Q + RG+P+S LE   +  +  G
Sbjct: 1   GSGYKVSGGLHGVGASVVNALSTELVVTVHRDGKIHRQTYKRGVPVSDLEIIGET-DHTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F PDP+IF +   +D   L    +  A+L+  V       +E  E+        ++
Sbjct: 60  TTTHFVPDPEIFTETTVYDYDLLANRVRELAFLTKGVNITIEDKREGQERKNE-----YH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K+Y++    ++ ++  E    + EK G    TVE A+ + +     I S+ N I 
Sbjct: 115 YEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNIN 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G +  LTR I  YA      +    ++  DD+      I+S+   +P+F G
Sbjct: 172 TYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNR 440
           QTKTKL + +A+   +       + ++++NP  A K+++  +  +  R+  +K      R
Sbjct: 232 QTKTKLGNSEARTITDTLFSAALETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 292 KSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
            A  +KI +N ++  ++ ALG      +  E  RY KV+
Sbjct: 352 KARLDKILSNNEVRSMITALGPGIGEDFNLEKARYHKVV 390


>gi|29652727|gb|AAO87333.1| DNA gyrase B [Listeria monocytogenes]
          Length = 196

 Score =  232 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 87/193 (45%), Positives = 119/193 (61%), Gaps = 2/193 (1%)

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 6   RKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILN 65

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 66  VEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTL 125

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+K
Sbjct: 126 FYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYK 183

Query: 619 GLGEMLASQLKET 631
           GLGEM   QL +T
Sbjct: 184 GLGEMNPEQLWDT 196


>gi|29652715|gb|AAO87327.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652739|gb|AAO87339.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652741|gb|AAO87340.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652759|gb|AAO87349.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652771|gb|AAO87355.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652793|gb|AAO87366.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652877|gb|AAO87408.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652950|gb|AAO87444.1| DNA gyrase B [Listeria monocytogenes]
          Length = 197

 Score =  232 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 87/193 (45%), Positives = 119/193 (61%), Gaps = 2/193 (1%)

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 7   RKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILN 66

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 67  VEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTL 126

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+K
Sbjct: 127 FYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYK 184

Query: 619 GLGEMLASQLKET 631
           GLGEM   QL +T
Sbjct: 185 GLGEMNPEQLWDT 197


>gi|29652934|gb|AAO87436.1| DNA gyrase B [Listeria monocytogenes]
          Length = 204

 Score =  232 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 87/193 (45%), Positives = 119/193 (61%), Gaps = 2/193 (1%)

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 14  RKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILN 73

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 74  VEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTL 133

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+K
Sbjct: 134 FYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYK 191

Query: 619 GLGEMLASQLKET 631
           GLGEM   QL +T
Sbjct: 192 GLGEMNPEQLWDT 204


>gi|33145988|emb|CAD57628.2| DNA gyrase subunit B [Vibrio splendidus]
          Length = 404

 Score =  232 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 157/414 (37%), Positives = 232/414 (56%), Gaps = 15/414 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +  G P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGQIHTQTYHHGEPQAPLAVIGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GT I F P  + F +   F    L K  +  ++L+  V      ++E        
Sbjct: 61  T-DKTGTEIRFWPSEETFSNVL-FHYDILAKRLRELSFLNSGVSIKLIDERE------ED 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F F GG++ ++     N++ I  +IF    E++     TVE A+ W +     I  
Sbjct: 113 KSDHFMFEGGIQAFVDHLNTNKTPIIQKIFHFDHERED--GITVEVAMQWNDGYQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV + 
Sbjct: 171 FTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE A+ +    +L++NP EA  +   +I         R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVEQAMGEKLSEFLIENPTEAKTVCTKIIDAARARDAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVD 547
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVD
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVD 404


>gi|29652701|gb|AAO87320.1| DNA gyrase B [Listeria monocytogenes]
          Length = 192

 Score =  232 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 87/193 (45%), Positives = 119/193 (61%), Gaps = 2/193 (1%)

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 2   RKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILN 61

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 62  VEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTL 121

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+K
Sbjct: 122 FYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYK 179

Query: 619 GLGEMLASQLKET 631
           GLGEM   QL +T
Sbjct: 180 GLGEMNPEQLWDT 192


>gi|29652799|gb|AAO87369.1| DNA gyrase B [Listeria monocytogenes]
          Length = 187

 Score =  232 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 87/189 (46%), Positives = 117/189 (61%), Gaps = 2/189 (1%)

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A 
Sbjct: 1   LEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKAR 60

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ M
Sbjct: 61  LDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYM 120

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
             L++  ++++  PPL++I  G +  Y + +   +  L    K    K  I R+KGLGEM
Sbjct: 121 RPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASLDKD--TKYSIQRYKGLGEM 178

Query: 624 LASQLKETA 632
              QL +T 
Sbjct: 179 NPEQLWDTT 187


>gi|211927063|dbj|BAG82784.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 393

 Score =  232 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 142/401 (35%), Positives = 219/401 (54%), Gaps = 13/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-R 203
            + Y++SGGLHGVG SVVNALS  L V V R   I+   F RG   +P++      +   
Sbjct: 1   GAGYKVSGGLHGVGASVVNALSSSLDVKVTRNGHIYYMDFERGKVKTPMKIIGDAPDDAH 60

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F PDP IF +   +D   L    +  A+L+  ++     ++        P +++F
Sbjct: 61  GTAVHFVPDPDIFRETTTYDINILTTRIRELAFLNKGLRITIRDNR-----PDEPTEDDF 115

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTI 322
            + GG++ Y++   +N++++  E    + E+ G    TVE A+ + ++      ++ N I
Sbjct: 116 LYEGGIRHYVEYLDKNKTVLFPEPIYVEGEQNGI---TVEVALQYTDDYHSNLMTFTNNI 172

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G + ALTR I  YA      +    ++  +D+      ++SV   +P+F 
Sbjct: 173 HTYEGGTHEEGFKRALTRVINDYARKNNLLKESDANLSGEDVREGMTAVVSVKHPDPQFE 232

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VN 439
           GQTKTKL + DA+  V+    + F  YL++NP  A K+++  +  S+ R+  ++ RE   
Sbjct: 233 GQTKTKLGNSDARAAVDRLFSEHFSKYLMENPSVARKVVDKGMLASKARVAAKRAREVTR 292

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +K+ +    LPGKLAD +      +ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV
Sbjct: 293 KKSGLEISNLPGKLADNTSKDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNV 352

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  N++I  L  A+G      +      Y K+II
Sbjct: 353 EKASIDKILANEEIRSLFTAMGTGFGGDFDLSKANYHKLII 393


>gi|126035256|gb|ABN72381.1| gyrase B subunit [Enterobacter cloacae]
          Length = 394

 Score =  232 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 152/405 (37%), Positives = 230/405 (56%), Gaps = 16/405 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           N++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL       +K G
Sbjct: 1   NNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYQHGVPEAPLAVTGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F+
Sbjct: 60  TMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    R
Sbjct: 230 QTKDKLVSSEVKSAVEQQMNELLSEYLLENPNDAKIVVGKIIDAARAREAARKAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDA
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDA 394


>gi|212659883|gb|ACJ37006.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 267

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 97/279 (34%), Positives = 159/279 (56%), Gaps = 13/279 (4%)

Query: 79  SEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLH 138
            EV+DN++DE +AG+A+ I V +  +G ++V DNGRGIPV+ H K    S  E+ILT LH
Sbjct: 1   FEVVDNSVDEALAGHADSILVKIHIDGSVSVSDNGRGIPVDIH-KEEGVSAAEVILTVLH 59

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+ L + + R    + Q++  G P  PL++  +
Sbjct: 60  AGGKFDDNSYKVSGGLHGVGVSVVNALSERLWLDIWRDGYHYQQEYVLGEPQYPLKQL-E 118

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
           V  KRGT + F+P  +IF D   F    L K  +  ++L+  +K     ++         
Sbjct: 119 VSAKRGTTLRFKPAKEIFSD-VEFHYENLAKRLRELSFLNSGLKVSLIDERG------EG 171

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
            +++F++ GG++++++   + ++ +   + +   E  G     V+ A+ W +     +  
Sbjct: 172 RRDDFHYEGGIRSFVEHLAQLKTPLHPNVISVTGEHNGI---VVDAALQWTDAYQETMYC 228

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
           + N I   +GGTH +G R ALTR +  Y E     R   
Sbjct: 229 FTNNIPQKDGGTHLAGFRAALTRTLGNYIEQNGVARQAK 267


>gi|33186743|emb|CAE12285.1| gyrase B subunit [Vibrio splendidus]
 gi|34850123|emb|CAE46929.1| DNA gyrase subunit B [Vibrio sp. Mel 31]
          Length = 404

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 156/414 (37%), Positives = 231/414 (55%), Gaps = 15/414 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +S G P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GT I F P  + F +   F    L K  +  ++L+  V       +E        
Sbjct: 61  T-DKTGTEIRFWPSEETFTN-IEFHYDILAKRLRELSFLNSGVSIKLIDKRE------ED 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F + GG++ +++    N++ I  +IF   +E+      TVE A+ W +     I  
Sbjct: 113 KMDHFEYEGGIQAFVEHLNTNKTPIIQKIFHFDSERDD--GITVEVAMQWNDGYQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GG H +G R ALTR +  + +      K   S   DD       I+SV + 
Sbjct: 171 FTNNIPQRDGGAHLAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE+ + +    +L++NP EA  +   +I         R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVD 547
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIM DADVD
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMADADVD 404


>gi|84310536|gb|ABC55416.1| DNA gyrase subunit B [Bacillus licheniformis]
          Length = 390

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 150/399 (37%), Positives = 218/399 (54%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            S Y++SGGLHGVG SVVNALS EL VTV R   I  Q+F RG+P + L+         G
Sbjct: 1   GSGYKVSGGLHGVGASVVNALSTELDVTVYRDGKIHYQEFERGVPKADLKVIGDT-EVTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F+PDP+IF +   +D   L    +  A+L+  VK      +E  E+        + 
Sbjct: 60  TTTHFKPDPEIFTETTEYDYDTLATRVRELAFLTKGVKITIEDKREGKERKNE-----YC 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K+Y++    +R +I  E    +  K G    TVE A+ + +     I S+ N I 
Sbjct: 115 YEGGIKSYVEHLNRSREVIHEEPVYIEGSKDGI---TVEVALQYNDSYTSNIYSFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G +  LTR I  YA       +   ++  +D+      I+S+   +P+F G
Sbjct: 172 TYEGGTHEAGFKTGLTRVINDYARRNGVFKESDPNLSGEDVREGLTAIISIKHPDPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNR 440
           QTKTKL + +A+   +    +  + +L++NP  A K++E  V+        ++ +    R
Sbjct: 232 QTKTKLGNSEARTITDALFSEALEKFLLENPDSAKKIVEKGVMAARARMAAKKARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 292 KSALEVSNLPGKLADCSSKDPTISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
            A  +KI +N ++  ++ ALG      +  E  RY KV+
Sbjct: 352 KARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVV 390


>gi|159894998|gb|ABX09845.1| DNA gyrase beta subunit [Vibrio campbellii]
          Length = 403

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 154/413 (37%), Positives = 234/413 (56%), Gaps = 15/413 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
                GT+I F P  + F +   F    L K  +  ++L+  V      ++E        
Sbjct: 61  TEK-TGTQIRFWPSAETFSN-TEFHYDILAKRLRELSFLNSGVSIKLVDEREAD------ 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F F GG++ +++    N++ I  +IF    E++     +VE A+ W +     I  
Sbjct: 113 KSDHFMFEGGIQAFVEHLNTNKTPIIEKIFHFDFERED--GISVEVAMQWNDGFQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV + 
Sbjct: 171 FTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ +    +L++NP EA  +   +I+        R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADV 546
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADV
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADV 403


>gi|159894996|gb|ABX09844.1| DNA gyrase beta subunit [Vibrio harveyi]
          Length = 403

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 154/413 (37%), Positives = 235/413 (56%), Gaps = 15/413 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             ++ GT+I F P  + F +   F    L K  +  ++L+  V      ++E        
Sbjct: 61  T-DQTGTQIRFWPSAETFTN-IEFHYDILAKRLRELSFLNSGVSIKLVDEREAD------ 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F F GG++ +++    N++ I  +IF    E++      VE A+ W +     I  
Sbjct: 113 KSDHFMFEGGIQAFVEHLNTNKTPIIEKIFHFDFERED--GIAVEVAMQWNDGFQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV + 
Sbjct: 171 FTNNIPQRDGGTHLAGFRAALTRTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ +    +L++NP EA  +   +I+        R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADV 546
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADV
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADV 403


>gi|289811930|ref|ZP_06542559.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 193

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 88/196 (44%), Positives = 122/196 (62%), Gaps = 6/196 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + VTV R   +++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 118 VVNALSKRVEVTVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ESFFDS 176

Query: 220 AGFDAARLLKMTQSKA 235
             F  +RL+ + ++KA
Sbjct: 177 PRFSVSRLMHVLKAKA 192


>gi|61661868|gb|AAX51589.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
          Length = 402

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 153/411 (37%), Positives = 241/411 (58%), Gaps = 14/411 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD ++Y++SGGLHGVG+SVVNALS+++ +T+ R   I+ Q +  G+P +PL +   
Sbjct: 1   AGGKFDENSYKVSGGLHGVGVSVVNALSEKVELTINRNGHIYQQTYCHGVPQAPLAEVGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GTR+ F P  + F +   F    L K  +  ++L+  +      ++E        
Sbjct: 61  -SDKTGTRLRFWPSEETFTNNLEFHYEILAKRLRELSFLNSGISIRLIDERE------EG 113

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +++ F + GG++ +++    N++ I  ++F   +E++     TVE A+ W +     +  
Sbjct: 114 KQDHFTYEGGIRAFVEHLNRNKTPIHQKVFHFDSERED--GITVEVAMQWNDGFQEGVYC 171

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD     V ++SV + 
Sbjct: 172 FTNNIPQRDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLVAVVSVKVP 231

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           +P+F+ QTK KLVS + +  VE+A+ + F  +L+++P +A  +   +I+ S  R   RK 
Sbjct: 232 DPKFSSQTKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKA 291

Query: 436 R-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           R    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 292 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 351

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           KILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDA
Sbjct: 352 KILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDA 402


>gi|82568131|dbj|BAE48500.1| DNA gyrase B [Thermoflavimicrobium dichotomicum]
          Length = 390

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 153/400 (38%), Positives = 218/400 (54%), Gaps = 14/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y+ SGGLHGVG+SVVNALS+ L V V R+  I  Q++ RG+P   LE      N+ G
Sbjct: 1   GEGYKFSGGLHGVGVSVVNALSEWLEVEVKREGKIHRQRYRRGVPEMDLEVIGYT-NETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+ITF+PD +IF +   +D   L    +  A+L+  +K      +          K+ F 
Sbjct: 60  TKITFKPDKEIFTETTVYDYDILQNRLRELAFLNRGIKIVLEDQRG------EGRKDIFQ 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           F GG+ ++++    NR ++       +  K+   +  +E A+ + +       SY N I 
Sbjct: 114 FDGGICSFVEHLNRNREVLHEPPIYIEGTKE---QIQIEIAMQYNDSYSSNIYSYANNIH 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G + ALTR I  YA      +    ++  DD+      I+SV I  P+F G
Sbjct: 171 THEGGTHEAGFKSALTRVINDYARRNNLLKESDSNLTGDDVREGLTAIVSVKITNPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + +A+   E    D F  YL ++P  A K++   +  +  R   RK RE   R
Sbjct: 231 QTKTKLGNSEARTATEQLFSDRFQSYLEEHPAVAKKIISKAVTAARAREAARKARELTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC+   A  +ELFIVEGDSAGG+AKQ R+R  QA+LPL+GKILNV 
Sbjct: 291 KNALEVSSLPGKLADCTSRNAEISELFIVEGDSAGGTAKQGRDRMFQAILPLKGKILNVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +K  +N +I  ++ ALG      +  + LRY K+II
Sbjct: 351 KARLDKALSNDEIRTIITALGTGIGEDFNLDKLRYHKIII 390


>gi|4996794|dbj|BAA78442.1| subunit B protein of DNA gyrase [bacterium rM3]
          Length = 317

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 109/325 (33%), Positives = 164/325 (50%), Gaps = 33/325 (10%)

Query: 73  ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKST 129
            LHHL  EV+DN++DE +AGY + I V++  +G L+V+DNGRGIP          P +S 
Sbjct: 1   GLHHLVFEVVDNSIDEALAGYCDDILVTIHADGSLSVIDNGRGIPTGVKMDDKHEPKRSA 60

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV+R    +   FSRG  
Sbjct: 61  AEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSVWLKLTVSRDGQRYEIDFSRGHV 120

Query: 190 ------------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
                       +SP+    +  +KRGT++ F PD +IF +   F    L K  +  ++L
Sbjct: 121 QNRLIEVVDGAEVSPMRVVGE-SDKRGTKVHFLPDQEIFKENFDFRYEILAKRLRELSFL 179

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V+     +++  E         F   GG+K +++     + ++    F     +   
Sbjct: 180 NNGVRIRLKDERDGKEDD-------FSGAGGVKGFVEFINGTKKVLHPTAFHAMGSRPAE 232

Query: 298 -------HRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
                      VE ++ W +   E    + N I   +GGTH +GLR A+TR I KY E  
Sbjct: 233 TYGGIPGTEIGVEISMQWNDSYGEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIEQN 292

Query: 350 Q--NKRAISIISDDLMISAVGILSV 372
               K  + +  DD+      +LSV
Sbjct: 293 DLAKKAKVEVTGDDMREGLCAVLSV 317


>gi|302122526|gb|ADK92932.1| DNA gyrase subunit B [Geobacillus jurassicus]
          Length = 388

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 145/398 (36%), Positives = 219/398 (55%), Gaps = 14/398 (3%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG SVVNALS+ L V V R   I  Q++ RG P + L+   +  ++ GT   
Sbjct: 1   KVSGGLHGVGASVVNALSEWLEVYVYRDGKIHYQRYERGEPCTDLQVIGET-DRTGTTTR 59

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F+PDP+IF +   FD   L    +  A+L+  +K   + ++    K        + + GG
Sbjct: 60  FKPDPEIFTETTEFDYETLATRLRELAFLNRGLKITLTDERVDNRKNE------YVYEGG 113

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           +++Y++     R ++  E      E+ G     VE A+ + +     I S+ N I T EG
Sbjct: 114 IRSYVRHLNRTREVLHEEPIYIAGERDGI---AVEIALQYNDGYTSNIYSFVNNIHTHEG 170

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTHESG ++ALTR I  YA   Q  +    ++  +D+      I+S+    P+F GQTKT
Sbjct: 171 GTHESGFKMALTRIINDYARKQQIFKDNDANLTGEDVREGLTAIVSIKHPSPQFEGQTKT 230

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAI 444
           KL + DA+   +    + F+ +L+++P  A K++E  ++        ++ +    RK+A+
Sbjct: 231 KLGNSDARTVTDAVFSEQFETFLLEHPTIARKIVEKGMMAARARLAAKKARELTRRKSAL 290

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  
Sbjct: 291 EISNLPGKLADCSSRDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARL 350

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           + I +N ++  ++ ALG      +     RY K+IIMT
Sbjct: 351 DXILSNNEVRAIITALGTGIGEDFDISKARYHKIIIMT 388


>gi|148971431|gb|ABR20253.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 152/432 (35%), Positives = 226/432 (52%), Gaps = 21/432 (4%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD++TY++SGGLHGVG+SVVNALS+ L + + R   ++ Q++  G PL
Sbjct: 1   EVIMTVLHAGGKFDDNTYKVSGGLHGVGVSVVNALSERLFLKIRRSGALYEQEYRMGEPL 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            P+ K  + R   GT I F+P  +IF +   FD   L    +  ++L+  VK   + ++ 
Sbjct: 61  HPIRKIGEARG-TGTEIRFQPSAQIFSETN-FDYEVLANRIREISFLNSGVKIYPTDER- 117

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                    +E FY  GG++ +++    NR+     +        G     VE A+ W +
Sbjct: 118 ------NERQELFYVEGGIRAFVEYLNRNRTAPHPTVCHFSG---GEAGIGVEVALQWTK 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                +  + N +   +GGTH +G R ALTR +  + E T    K  + +  DD      
Sbjct: 169 SYQETVFCFTNNLPQRDGGTHLTGFRSALTRTLVGFLEETGHARKEKVQVTGDDAREGLT 228

Query: 368 GILSVFIREPEFAGQTKTK---LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            ++S+ +   +     + +   L S   +R V     +     L  +        E +  
Sbjct: 229 AVVSIRVYRSQVQLPDQGQAGLLGSQTGRRGVRCRKTEGVS--LGASGCRTPDCREKMEA 286

Query: 425 RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
                  RR +    RK A+    LPGKLADC +      ELF+VEGDSAGGSAKQAR+R
Sbjct: 287 ARAREAARRARDLTRRKGALDVAGLPGKLADCQEKDPSLCELFLVEGDSAGGSAKQARDR 346

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTD 543
            +QAVLPL GKI+NV  A  +++ ++ +I  L+ ALGC          +LRY +VIIMTD
Sbjct: 347 RHQAVLPLNGKIINVEKASFDRVLSSDEITALITALGCGIGKDDFNAGNLRYHRVIIMTD 406

Query: 544 ADVDGAHIASLL 555
           ADVDG+HI +LL
Sbjct: 407 ADVDGSHIRTLL 418


>gi|159894988|gb|ABX09840.1| DNA gyrase beta subunit [Vibrio sp. fram1]
          Length = 403

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 154/413 (37%), Positives = 234/413 (56%), Gaps = 15/413 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVVGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             ++ GT+I F P  + F +   F    L K  +  ++L+  V      ++E        
Sbjct: 61  T-DQTGTQIRFWPSAETFTN-IEFHYDILAKRLRELSFLNSGVSIKLVDEREAD------ 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F F GG++ ++     N++ I  +IF    E++      VE A+ W +     I  
Sbjct: 113 KSDHFMFEGGIQAFVDHLNTNKTPIIEKIFHFDFERED--GIAVEVAMQWNDGFQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV + 
Sbjct: 171 FTNNIPQRDGGTHLAGFRAALTRTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ +    +L++NP EA  +   +I+        R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADV 546
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADV
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADV 403


>gi|153831515|ref|ZP_01984182.1| DNA gyrase, subunit B [Vibrio cholerae 623-39]
 gi|148873004|gb|EDL71139.1| DNA gyrase, subunit B [Vibrio cholerae 623-39]
          Length = 128

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 73/128 (57%), Positives = 101/128 (78%), Gaps = 2/128 (1%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S+NYD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DN++DE +AGY   I V
Sbjct: 2   SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +  ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 62  TIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 160 SVVNALSD 167
           SVVNALS+
Sbjct: 121 SVVNALSE 128


>gi|308153068|dbj|BAJ22123.1| DNA gyrase subunit B [Bacillus sp.]
          Length = 391

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 150/400 (37%), Positives = 222/400 (55%), Gaps = 13/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            S Y++SGGLHGVG SVVNALS EL VTV R   I  Q ++RGIP+S LE   +  +  G
Sbjct: 1   GSGYKVSGGLHGVGASVVNALSTELDVTVHRDGKIHRQVYNRGIPVSDLEVIGET-DHTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F PDP+IF +   ++   L    +  A+L+  V       +E  E+        ++
Sbjct: 60  TTTHFVPDPEIFTETTEYEYDLLANRVRELAFLTKGVNITIEDKREGQERKNE-----YH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K+Y++    ++ ++  E    + EK G    TVE A+ + +     I S+ N I 
Sbjct: 115 YEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGI---TVEVALQYNDGYTSNIYSFTNNIN 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G +  LTR I  YA      +    ++  DD+      I+S+   +P+F G
Sbjct: 172 TYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNR 440
           QTKTKL + +A+   +       + ++++NP  A K+++  +  +  R+  +K      R
Sbjct: 232 QTKTKLGNSEARTITDTLFSAALETFMLENPDAARKIVDKGLMAARARMAAKKARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 292 KSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +KI +N ++  ++ ALG      +  E  RY KV+I
Sbjct: 352 KARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVVI 391


>gi|41387078|gb|AAS01493.1| GyrB [Bacillus sp. FO-080]
          Length = 392

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 145/402 (36%), Positives = 219/402 (54%), Gaps = 14/402 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS EL V V R   I  QK+ RG+P + L+   +  ++ G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTELEVFVHRDGKIHYQKYERGVPAADLKVIGET-DRTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F+PD +IF +   ++   L    +  A+L+  +K      +E  +K      +EF+
Sbjct: 60  TITRFKPDSEIFTETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFH 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+K+Y++    ++  I  E       K G     VE A+ + E       S+ N I 
Sbjct: 114 YEGGIKSYVEHLNRSKQPIHEEPVYVDGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIH 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G + ALTR I  Y       +    ++  +D+      I+S+    P+F G
Sbjct: 171 TYEGGTHEVGFKTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNR 440
           QTKTKL + +A+   E+   + F+ +L++NP  A K+++   +        ++ +    R
Sbjct: 231 QTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV 
Sbjct: 291 KSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
            A  +KI +N ++  ++ A+G      +  E  RY KVIIMT
Sbjct: 351 KARLDKILSNDEVRTIITAIGTNIGGDFAIEKARYHKVIIMT 392


>gi|61661944|gb|AAX51627.1| DNA gyrase beta subunit [Photobacterium iliopiscarium]
          Length = 403

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 152/412 (36%), Positives = 241/412 (58%), Gaps = 14/412 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGG  D+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I+ Q +  G+P +PL +   
Sbjct: 1   AGGNCDDNSYKVSGGLHGVGVSVVNALSEKVELTINRNGHIYQQTYCNGVPQAPLAEVGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GTR+ F P  + F     F    L K  +  ++L+  +      ++E        
Sbjct: 61  -SDKTGTRLRFWPSEETFTTNLEFHYEILAKRLRELSFLNSGISIRLIDERE------EG 113

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +++ F + GG++ +++    N++ I  ++F  ++E++     TVE A+ W +     +  
Sbjct: 114 KQDHFTYEGGIRAFVEHLNRNKTPIHQKVFHFESERED--GITVEVAMQWNDGFQEGVYC 171

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD     V ++SV + 
Sbjct: 172 FTNNIPQRDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLVAVVSVKVP 231

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           +P+F+ QTK KLVS + +  VE+A+ + F  +L+++P +A  +   +I+ S  R   RK 
Sbjct: 232 DPKFSSQTKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKA 291

Query: 436 R-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           R    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 292 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 351

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           KILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDAD
Sbjct: 352 KILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDAD 403


>gi|110264849|gb|ABG57000.1| DNA gyrase beta subunit [Photobacterium kishitanii]
          Length = 401

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 149/410 (36%), Positives = 239/410 (58%), Gaps = 14/410 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R+  I  Q +  G+P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRKGHIHQQSYHHGVPDAPLAVIGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GTR+ F P  + F +   F    L K  +  ++L+  V      ++E        
Sbjct: 61  T-DKTGTRLRFWPSEETFTNNLEFQYEILAKRLRELSFLNSGVSIRLIDERE------EG 113

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +++ F + GG++ +++    N++ I  ++F   +E++     TVE A+ W +     +  
Sbjct: 114 KQDHFMYEGGIRAFVEHLNRNKTPIHQKVFHFDSERED--GITVEVAMQWNDGFQEGVYC 171

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD     + ++SV + 
Sbjct: 172 FTNNIPQRDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLIAVVSVKVP 231

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ + F  +L+++P +A  +   +I+ S      R+ 
Sbjct: 232 DPKFSSQTKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKA 291

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 292 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 351

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTD 543
           KILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTD
Sbjct: 352 KILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTD 401


>gi|29652673|gb|AAO87306.1| DNA gyrase B [Listeria monocytogenes]
          Length = 188

 Score =  231 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 87/189 (46%), Positives = 117/189 (61%), Gaps = 2/189 (1%)

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
            +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A
Sbjct: 2   GLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKA 61

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
             ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ 
Sbjct: 62  RLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRY 121

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
           M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+KGLGE
Sbjct: 122 MRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYKGLGE 179

Query: 623 MLASQLKET 631
           M   QL +T
Sbjct: 180 MNPEQLWDT 188


>gi|61661954|gb|AAX51632.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
          Length = 401

 Score =  231 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 152/410 (37%), Positives = 241/410 (58%), Gaps = 14/410 (3%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I+ Q +  G+P +PL +    
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRNGHIYQQTYCHGVPQAPLAEVGD- 59

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            +K GTR+ F P  + F +   F    L K  +  ++L+  +      ++E        +
Sbjct: 60  SDKTGTRLRFWPSEETFTNNLEFHYEILAKRLRELSFLNSGISIRLIDERE------EGK 113

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
           ++ F + GG++ +++    N++ I  ++F   +E++     TVE A+ W +     +  +
Sbjct: 114 QDHFTYEGGIRAFVEHLNRNKTPIHQKVFHFDSERED--GITVEVAMQWNDGFQEGVYCF 171

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +G R ALTR +  + +      K   +   DD     V ++SV + +
Sbjct: 172 TNNIPQRDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLVAVVSVKVPD 231

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F+ QTK KLVS + +  VE+A+ + F  +L+++P +A  +   +I+ S  R   RK R
Sbjct: 232 PKFSSQTKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKAR 291

Query: 437 -EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
               RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GK
Sbjct: 292 EMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGK 351

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           ILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDA
Sbjct: 352 ILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDA 401


>gi|145309468|dbj|BAF56637.1| DNA gyrase subunit B [Alicyclobacillus sendaiensis]
          Length = 389

 Score =  231 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 138/399 (34%), Positives = 216/399 (54%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS+ + V V R   I+ Q++ RG PL  L+      +K G
Sbjct: 1   GKGYKVSGGLHGVGASVVNALSEWMRVEVHRDGHIYVQEYERGTPLYDLKVIG-TTDKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+++F+PDP+IF +   F A  L+   +  A+L+  ++  +  ++E        ++  F 
Sbjct: 60  TKVSFKPDPEIFTETTVFSAETLMNRLRELAFLNAGLEIVFEDERE------GGKRAVFK 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+  +++   ++++++  +       K       VE A+ + +       S+ N I 
Sbjct: 114 YDGGVAEFVRWLNQSKNVLFDDPIYVSAVKDDV---AVEIALQYNDGYTATVYSFANNIN 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G + ALTR I  YA      +    S+  DD+      ++SV + EP+F G
Sbjct: 171 TVEGGTHEAGFKSALTRVINDYARRHGFLKSNDNSMTGDDVREGLTAVVSVKVPEPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + + +  VE    +    +L +NP  A K+++  I  +  R   R+ RE+ R 
Sbjct: 231 QTKTKLGNSEVRGIVETLFAERMQIFLEENPAIARKIVDKCILAARAREAARRARELTRS 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKL DCS      +ELF+VEGDSAGGSAK  R+   QA+LPLRGKI+NV  
Sbjct: 291 KKMDVTSLPGKLTDCSSKDPERSELFLVEGDSAGGSAKMGRDPQTQAILPLRGKIINVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +K+  N++I  ++ A G      +     RY K++I
Sbjct: 351 ARLDKVLANEEIRAIITACGTGIGDDFDISKARYHKIVI 389


>gi|190148836|gb|ACE63393.1| DNA gyrase B subunit [Pseudonocardia aurantiaca]
          Length = 413

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 136/418 (32%), Positives = 223/418 (53%), Gaps = 20/418 (4%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+ +Y +SGGLHGVG+SVVNALS  L V +     ++ Q ++R +P    +   +   
Sbjct: 1   KFDSDSYAVSGGLHGVGVSVVNALSTALDVEIHTDGFVWRQHYARSVPGPLRK--GEPTK 58

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG----- 256
           + G+ +TF PD  IF     F+   + +  Q  A+L+  +      ++            
Sbjct: 59  RTGSTVTFWPDGDIFETLT-FNIETIRRRLQEMAFLNKGLTIILCDERNGHPAEEEEPDA 117

Query: 257 -----IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
                  ++  F +P GL+ ++    +++  I  ++ +   E +G     VE A+ W   
Sbjct: 118 EGYVAKVKEYTFCYPNGLEDFVAHLNKSKDPIHKKLVSYTGEGEGH---AVEVAMQWNSG 174

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVG 368
               + ++ NTI T EGGTHE G R ALT  + +YA   +   ++  ++  +D+      
Sbjct: 175 YTESVYTFANTINTHEGGTHEEGFRSALTTTVNRYARDKKLLKEKDPALSGEDIREGLAA 234

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           I+SV ++EP+F GQTKTKL + + +  V+    +    +  +NP EA  ++   +  ++ 
Sbjct: 235 IVSVKVKEPQFEGQTKTKLGNTEVKSFVQRVSNEWLADWFERNPTEAKTIVNKAVSSAQA 294

Query: 429 RLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
           R+  RK RE V RK+A     LPGKLADC       +E+++VEGDSAGGSAK  R+   Q
Sbjct: 295 RMAARKARELVRRKSAGDIGGLPGKLADCRSTDPSKSEVYVVEGDSAGGSAKSGRDSMYQ 354

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545
           A+LP+RGKI+NV  A  +++  N ++  ++ ALG     ++    LRY K+++MTDAD
Sbjct: 355 AILPIRGKIINVEKARLDRVLKNTEVQAIITALGTGIHDEFDLAKLRYHKIVLMTDAD 412


>gi|88824777|gb|ABD52434.1| gyrase B [Enterobacter cloacae]
          Length = 394

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 151/405 (37%), Positives = 230/405 (56%), Gaps = 16/405 (3%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD+++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL       +K
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYQHGVPDAPLAVTGDT-DK 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT + F P  + F +   F+   L K  +  ++L+  V       ++  E       + 
Sbjct: 60  TGTMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE-------DH 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N 
Sbjct: 113 FHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNN 169

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F
Sbjct: 170 IPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKF 229

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EV 438
           + QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R   
Sbjct: 230 SSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMT 289

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILN
Sbjct: 290 RRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILN 349

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
           V  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 350 VEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMT 394


>gi|61661956|gb|AAX51633.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
          Length = 401

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 152/410 (37%), Positives = 241/410 (58%), Gaps = 14/410 (3%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I+ Q +  G+P +PL +    
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRNGHIYQQTYCHGVPQAPLAEVGD- 59

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            +K GTR+ F P  + F +   F    L K  +  ++L+  +      ++E        +
Sbjct: 60  SDKTGTRLRFWPSEETFTNNLEFHYEILAKRLRELSFLNSGISIRLIDERE------EGK 113

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
           ++ F + GG++ +++    N++ I  ++F   +E++     TVE A+ W +     +  +
Sbjct: 114 QDHFTYEGGIRAFVEHLNRNKTPIHQKVFHFDSERED--GITVEVAMQWNDGFQEGVYCF 171

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +G R ALTR +  + +      K   +   DD     V ++SV + +
Sbjct: 172 TNNIPQRDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLVAVVSVKVPD 231

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F+ QTK KLVS + +  VE+A+ + F  +L+++P +A  +   +I+ S  R   RK R
Sbjct: 232 PKFSSQTKDKLVSSEVKSAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKAR 291

Query: 437 -EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
               RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GK
Sbjct: 292 EMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGK 351

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           ILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDA
Sbjct: 352 ILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDA 401


>gi|29652777|gb|AAO87358.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652779|gb|AAO87359.1| DNA gyrase B [Listeria monocytogenes]
          Length = 190

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 87/192 (45%), Positives = 119/192 (61%), Gaps = 2/192 (1%)

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV
Sbjct: 1   KSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNV 60

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
             A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT F
Sbjct: 61  EKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLF 120

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
           Y+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+KG
Sbjct: 121 YRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYKG 178

Query: 620 LGEMLASQLKET 631
           LGEM   QL +T
Sbjct: 179 LGEMNPEQLWDT 190


>gi|328349719|emb|CBY89167.1| GyrB protein [Flavobacterium sp. R-38474]
          Length = 400

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 143/405 (35%), Positives = 224/405 (55%), Gaps = 9/405 (2%)

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
           ++T + AGGKFD  +Y++SGGLHGVG+S VNALS+ L  TV R   ++ Q++ +G    P
Sbjct: 1   VMTKIGAGGKFDKDSYKVSGGLHGVGVSCVNALSNHLRATVFRDGKVYEQEYEKGKAQYP 60

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
           +++  +  +KRGT +TF+PD  IF     ++   +    +  ++L+  +    +  +E  
Sbjct: 61  VKQIGET-DKRGTMVTFKPDDTIFTQSTEYNYDTIAGRMRELSFLNKGITITLTDKRETD 119

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
           EK      E F+   GLK +++   + R  I S + +   EK       VE A+ +    
Sbjct: 120 EKG-EFVSEIFHSDEGLKEFVRFLDKGREGIISHVISMDHEK---GEIPVEVALIYNTSY 175

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGI 369
              I SY N I T EGGTH  G R+ LTR +KKYA+ +    K    I  DD       I
Sbjct: 176 SENIFSYVNNINTHEGGTHLQGFRMGLTRTLKKYADSSGLLDKLKFEITGDDFREGLTAI 235

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           +SV ++EP+F GQTKTKL + +    V  A+ +  ++YL +NP +A  +++ VI  ++ R
Sbjct: 236 ISVKVQEPQFEGQTKTKLGNREVVSPVSQAVSEMLENYLEENPNDAKTIVQKVILAAQAR 295

Query: 430 LRRRKQREVNRKTAIRKLRLPGKLA-DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
              +K RE+ ++  +           DCS+      E+++VEGDSAGG+AKQ R+R+ QA
Sbjct: 296 HAAKKAREMVQRKTVLGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGGTAKQGRDRNFQA 355

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           +LPLRGKILNV  A   K+  N++I ++  ALG    ++   + L
Sbjct: 356 ILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTIGTEEDSKAL 400


>gi|33186747|emb|CAE12287.1| gyrase B subunit [Vibrio splendidus]
          Length = 405

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 155/413 (37%), Positives = 230/413 (55%), Gaps = 15/413 (3%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +  G P +PL      
Sbjct: 3   GGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVIGDT 62

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            +K GT I F P  + F +   F    L K  +  ++L+  V       +E        +
Sbjct: 63  -DKTGTEIRFWPSEETFTN-IEFHYDILAKRLRELSFLNSGVSIKLIDKRE------EDK 114

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
            + F + GG++ +++    N++ I  +IF   +E+      TVE A+ W +     I  +
Sbjct: 115 MDHFEYEGGIQAFVEHLNTNKTPIIQKIFHFDSERDD--GITVEVAMQWNDGYQENIYCF 172

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GG H +G R ALTR +  + +      K   S   DD       I+SV + +
Sbjct: 173 TNNIPQRDGGAHLAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPD 232

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQ 435
           P+F+ QTK KLVS + +  VE+ + +    +L++NP EA  +   +I         R+ +
Sbjct: 233 PKFSSQTKDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAR 292

Query: 436 REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
               RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GK
Sbjct: 293 EMTRRKGALDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGK 352

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVD 547
           ILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVD
Sbjct: 353 ILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVD 405


>gi|34850095|emb|CAE46919.1| DNA gyrase subunit B [Vibrio gigantis]
          Length = 404

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 154/414 (37%), Positives = 233/414 (56%), Gaps = 15/414 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKF++++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +S G P +PL     
Sbjct: 1   AGGKFNDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GT I F P  + F +   F    L K  +  ++L+  V      ++E        
Sbjct: 61  T-DKTGTEIRFWPSEETFTN-IEFHYDILAKRLRELSFLNSGVSIKLIDERE------ED 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F + GG++ +++    N++ I  +IF   +E++     TVE A+ W +     I  
Sbjct: 113 KMDHFEYEGGIQAFVEHLNTNKTPIIQKIFHFNSERED--GITVEVAMQWNDGYQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GG H +G R ALTR +  + +      K   +   DD       I+SV + 
Sbjct: 171 FTNNIPQRDGGAHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAIVSVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE+ + +    +L++NP EA  +   +I         R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKTVCSKIIDAARARDAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVD 547
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIM DADVD
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMADADVD 404


>gi|33186739|emb|CAE12283.1| gyrase B subunit [Vibrio pomeroyi]
          Length = 404

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 155/414 (37%), Positives = 230/414 (55%), Gaps = 15/414 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKF++++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +S G P +PL     
Sbjct: 1   AGGKFNDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GT I F P  + F +   F    L K  +  ++L+  V       +E        
Sbjct: 61  T-DKTGTEIRFWPSEETFTN-IEFHYDILAKRLRELSFLNSGVSIKLIDKRE------ED 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F + GG++ +++    N++ I  +IF   +E+      TVE A+ W +     I  
Sbjct: 113 KMDHFEYEGGIQAFVEHLNTNKTPIIQKIFHFDSERDD--GITVEVAMQWNDGYQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
             N I   +GG H +G R ALTR +  + +      K   S   DD       I+SV + 
Sbjct: 171 STNNIPQRDGGAHLAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE+ + +    +L++NP EA  +   +I         R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVD 547
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIM DADVD
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMADADVD 404


>gi|35210337|dbj|BAC92680.1| gyrase B subunit [Alicyclobacillus hesperidum]
          Length = 389

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 138/399 (34%), Positives = 217/399 (54%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            + Y++SGGLHGVG SVVNALS+ L V V R   I  Q++ RG PL  L+   +  ++ G
Sbjct: 1   GAGYKVSGGLHGVGASVVNALSEWLKVEVHRDGKIHVQEYERGTPLYDLKVVGET-DRTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TFRPDP+IF +   F A  L    +  A+L+  ++     ++E        ++ E++
Sbjct: 60  TTVTFRPDPEIFTETTEFSAETLQNRLRELAFLNAGLEIVLEDERE------GGKRFEYH 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTIL 323
           + GG+K ++     ++ ++ +E    +  K      TVE A+ + +        + N I 
Sbjct: 114 YEGGVKEFVLYLNHSKDVLFAEPIYVQGVKD---EVTVEIALQYNDGYSSTLYSFANNIN 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G + ALTR I  Y       +    S+  DD+      ++SV + EP+F G
Sbjct: 171 TGEGGTHEAGFKSALTRIINDYGRRNNLIKGSDGSLTGDDVREGLTAVVSVKVPEPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + + +  VE+   +    +L +NP  A ++LE  +  +  R   ++ RE+ R 
Sbjct: 231 QTKTKLGNSEVRGIVESLFGERLQIFLEENPAVARRILEKCVLAARAREAAKRARELTRN 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKL DC       +EL++VEGDSAGGSAK  R+   QA+LPLRGKI+NV  
Sbjct: 291 KKMEVTSLPGKLTDCVSKDPEVSELYLVEGDSAGGSAKGGRDPQTQAILPLRGKIINVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +K+ +N++I  ++ A G     ++     RY K++I
Sbjct: 351 ARLDKVLSNEEIRAIITACGTGIGDEFDLSKARYHKIVI 389


>gi|58698128|ref|ZP_00373051.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58535374|gb|EAL59450.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 271

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 95/263 (36%), Positives = 144/263 (54%), Gaps = 9/263 (3%)

Query: 64  MYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122
           MYIG TD+   LHH+  EVIDNA+DE +AGY + IEVS++ +G ++V DNGRGIP + H 
Sbjct: 1   MYIGDTDDGSGLHHMVYEVIDNAIDESLAGYCDKIEVSINKDGSVSVTDNGRGIPTDIHE 60

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
           +    S  E+I+T LHAGGKFD++TY++SGGLHGVGISVVNALS  L +T+ R       
Sbjct: 61  E-EGISAAEVIMTQLHAGGKFDSNTYKVSGGLHGVGISVVNALSSWLELTIWRNKKEHFM 119

Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
           +F  G  + PL+   +  NKRGT++TF P  + F     F  + L    +  A+L+  + 
Sbjct: 120 RFEDGESIEPLKVVNENTNKRGTKVTFMPSTETFNGIN-FSYSTLESRIRELAFLNSNID 178

Query: 243 TCWSCDK-EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSE-IFTGKTEKKGTH-R 299
                 + E   +    +  +     G   ++Q   +N++ ++      G  E  G    
Sbjct: 179 ITLRDLRNEPYTESHFNQSNQSKDNFGTANFVQYLDKNKTHVTKIASMKGDAEDLGISLE 238

Query: 300 GTVEWAIAWCEENPEITSYCNTI 322
            ++EW  ++      +  + N I
Sbjct: 239 ISMEWNDSY---YENMLCFTNNI 258


>gi|84310538|gb|ABC55417.1| DNA gyrase subunit B [Bacillus licheniformis]
          Length = 390

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 148/399 (37%), Positives = 219/399 (54%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            S Y++SGGLHGVG SVVNALS EL VTV R   +  Q+F RG+P + L+         G
Sbjct: 1   GSGYKVSGGLHGVGASVVNALSTELDVTVYRDGKVHYQEFERGVPKADLKVIGDT-EVTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F+PDP+IF +   +D   L    +  A+L+  VK      +E  E+       ++ 
Sbjct: 60  TTTHFKPDPEIFTETTEYDYDTLATRVRELAFLTKGVKITIEDKREGKERKN-----DYC 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K+Y++    +R ++  E    +  K G    TVE A+ + +     I S+ N I 
Sbjct: 115 YEGGIKSYVEHLNRSREVVHEEPVYIEGSKDGI---TVEVALQYNDSYTSNIYSFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G +  LTR I  YA       +   ++  +D+      I+S+   +P+F G
Sbjct: 172 TYEGGTHEAGFKTGLTRVINDYARRNGVFKESDPNLSGEDVREGLTAIISIKHPDPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNR 440
           QTKTKL + +A+   +    +  + +L++NP  A K++E  V+        ++ +    R
Sbjct: 232 QTKTKLGNSEARTITDALFSEALEKFLLENPDSAKKIVEKGVMAARARMAAKKARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 292 KSALEVSNLPGKLADCSSKDPTISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
            A  +KI +N ++  ++ ALG      +  E  RY KV+
Sbjct: 352 KARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVV 390


>gi|42541269|gb|AAS19514.1| DNA gyrase subunit B [Photobacterium kishitanii]
          Length = 402

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 150/411 (36%), Positives = 240/411 (58%), Gaps = 14/411 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R+  I  Q +  G+P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRKGHIHQQSYHHGVPDAPLAVIGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GTR+ F P  + F +   F    L K  +  ++L+  V      ++E        
Sbjct: 61  T-DKTGTRLRFWPSEETFTNNLEFQYEILAKRLRELSFLNSGVSIRLIDERED------G 113

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +++ F + GG++ +++    N++ I  ++F   +E++     TVE A+ W +     +  
Sbjct: 114 KQDHFMYEGGIRAFVEHLNRNKTPIHQKVFHFDSERED--GITVEVAMQWNDGFQEGVYC 171

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD     + ++SV + 
Sbjct: 172 FTNNIPQRDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLIAVVSVKVP 231

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ + F  +L+++P +A  +   +I+ S      R+ 
Sbjct: 232 DPKFSSQTKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKA 291

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 292 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 351

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           KILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDA
Sbjct: 352 KILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDA 402


>gi|33186733|emb|CAE12280.1| gyrase B subunit [Vibrio crassostreae]
 gi|34850107|emb|CAE46925.1| DNA gyrase subunit B [Vibrio crassostreae]
          Length = 404

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 155/414 (37%), Positives = 233/414 (56%), Gaps = 15/414 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +S G P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GT I F P  + F +   F    L K  +  ++L+  V      ++E        
Sbjct: 61  T-DKTGTEIRFWPSEETFTN-IEFHYDILAKRLRELSFLNSGVSIKLIDERE------ED 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F + GG++ +++    N++ I  +IF   +E++     TVE A+ W +     I  
Sbjct: 113 KMDHFEYEGGIQAFVEHLNTNKTPIIQKIFHFNSERED--GITVEVAMQWNDGYQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GG H +G R ALTR +  + +      K   +   DD       I+SV + 
Sbjct: 171 FTNNIPQRDGGAHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAIVSVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE+ + +    +L++NP EA  +   +I         R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKTVCSKIIDAARARDAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVD 547
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIM DADVD
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMADADVD 404


>gi|307939352|gb|ADN95867.1| DNA gyrase B [Hymenobacter psychrotolerans]
          Length = 423

 Score =  230 bits (587), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 163/428 (38%), Positives = 244/428 (57%), Gaps = 21/428 (4%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD ++Y+ SGGLHGVG+S VNALS   HVTV R+  I+ Q+++ G+P   + +      
Sbjct: 1   KFDKNSYKTSGGLHGVGVSCVNALSTHTHVTVKREGHIYEQEYTIGVPQYDVRQIGDTTE 60

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE-KYGIPEK 260
            RGTR+ F+PDP IF +   +   R+    +  AYL+  ++   +  ++ A    G P++
Sbjct: 61  -RGTRVWFQPDPTIFDETLEYSYERIATRLRELAYLNRGIRIVLTDLRDAAVGTEGEPQR 119

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYC 319
            EFY  GG+  Y+Q    +R+++ ++     TE+       VE A  + +   E   SY 
Sbjct: 120 TEFYSEGGVAEYVQYLDSSRTVLMTKPVYVATER----GIPVEVAFQYNDSYQEHIFSYV 175

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREP 377
           N I T EGGTH +G R A+TR +K YAE +    K  + I  DD       ++SV + EP
Sbjct: 176 NNINTHEGGTHVAGFRSAITRVLKGYAEKSGEVAKAKVEIQGDDFREGLTAVISVKVAEP 235

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F GQTK KL + +    V   + +  + YL +NP EA  ++E VI  ++ R+  +K RE
Sbjct: 236 KFEGQTKGKLGNSEVSGAVNQVVGEILNQYLEENPKEARVIVEKVILAAKARVAAKKARE 295

Query: 438 VNRKTAIRKLRL-PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
           + ++ ++      PGKLADCS++     EL++VEGDSAGG+AKQ RNR+ QA+LPLRGKI
Sbjct: 296 MVQRKSVLGSNSLPGKLADCSESDPAICELYLVEGDSAGGTAKQGRNRAFQAILPLRGKI 355

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-----------EDLRYEKVIIMTDAD 545
           LNV  A   +I  N++I +++ ALG     +  E           + LRY K+IIMT A 
Sbjct: 356 LNVEKAQEHRIYENEEIRNMITALGVSFEKKTDEDDGSSSRSLNLDKLRYHKIIIMTXAX 415

Query: 546 VDGAHIAS 553
           V G+HI +
Sbjct: 416 VXGSHIRT 423


>gi|60459506|gb|AAX20089.1| DNA gyrase subunit B [Leptospira interrogans serovar Australis]
          Length = 144

 Score =  230 bits (587), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 77/143 (53%), Positives = 108/143 (75%), Gaps = 1/143 (0%)

Query: 49  IRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLT 108
           I+ILEGLE VR RPGMYIG  DE  LH +  EV+DN++DE +AG+   I++S+  +  + 
Sbjct: 1   IKILEGLEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEIKISILPDNIVE 60

Query: 109 VVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDE 168
           V DNGRGIPV+ HP     ST+E+++T LHAGGKF+N  Y++SGGLHGVG+SVVNALS+ 
Sbjct: 61  VKDNGRGIPVDIHP-DKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEY 119

Query: 169 LHVTVARQNTIFSQKFSRGIPLS 191
           L V V ++  +++QK+ +G+P+S
Sbjct: 120 LEVEVHQKGKVYTQKYEKGVPVS 142


>gi|154347394|dbj|BAF74638.1| DNA gyrase subunit B [Streptobacillus moniliformis]
          Length = 429

 Score =  230 bits (587), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 162/430 (37%), Positives = 219/430 (50%), Gaps = 22/430 (5%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFDNS Y+ SGGLHGVGISVVNALS++L  TV R   +  Q FS+G  ++   +   
Sbjct: 4   AGGKFDNSNYQFSGGLHGVGISVVNALSEKLEATVTRDGRVVRQIFSKGNAITEALEIGN 63

Query: 199 VR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
                 GT I F+PD  IF     FD   L +  +  AYL+  +K      +    K   
Sbjct: 64  APAKAHGTTIKFKPDADIFETI-QFDYDILQRRLKELAYLNQGIKIILIDAR----KPEK 118

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG------KTEKKGTHRG------TVEWA 305
            ++E FYF GG+  ++   +    +I   I+        + E              VE A
Sbjct: 119 VKEEVFYFEGGIVDFVTELVGEDKIIEDVIYMKDRVMLTEGEVDDEGNPIPDKYSEVEIA 178

Query: 306 IAWCEENPEITS-YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMI 364
           + +      I   + N I T +GGTH SGLR ALTR I   A    +K       +D+  
Sbjct: 179 MIYKNSQSTIEYSFVNNINTSDGGTHVSGLRTALTRTINDLAREASSKNEFK--GEDVRE 236

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
             V +LS+   EP+F  QTK KL S +A   V          YL  +P +   +++ +  
Sbjct: 237 GLVYVLSLKFPEPQFESQTKAKLGSSEATSIVSGVFGSKLKMYLEDHPKDCKTIIDKIAI 296

Query: 425 RSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483
             + R   ++ R+ V +K       LPGKLADC       +E+FIVEGDSAGGSAKQ R 
Sbjct: 297 SKQAREAAKRARDLVTKKNEFSLGGLPGKLADCQSKNPEESEIFIVEGDSAGGSAKQGRF 356

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTD 543
           +  QA+LPLRGKILNV  A   KI  N +I  ++ A G     ++  E LRY K+IIMTD
Sbjct: 357 KEYQAILPLRGKILNVEKANEHKILENSEIKAMITAFGAGFGDRFDIEKLRYHKIIIMTD 416

Query: 544 ADVDGAHIAS 553
           ADVDG+HI +
Sbjct: 417 ADVDGSHIRT 426


>gi|42541301|gb|AAS19530.1| DNA gyrase subunit B [Photobacterium profundum]
          Length = 402

 Score =  230 bits (587), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 150/412 (36%), Positives = 235/412 (57%), Gaps = 15/412 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   +  Q +  G+P  PLE   +
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIYRHGFVHHQIYRHGVPDKPLETIGE 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GTR+ F P    F +   F    L K  +  ++L+  V      ++E        
Sbjct: 61  T-DKTGTRLRFWPSEGTFTNVV-FHYEILAKRLRELSFLNSGVSIRLIDERE------EG 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +++ F + GG++ ++     N++ I +++F    E++      VE A+ W +     I  
Sbjct: 113 KQDHFMYEGGIRAFVAHLNRNKTPIHAKVFHFDFERED--GIVVEVAMQWNDGFQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GG+H +G R ALTR +  + +      K   S   DD       ++SV + 
Sbjct: 171 FTNNIPQRDGGSHLAGFRGALTRTLNTFMDKEGFSKKEKTSTCGDDAREGLTAVVSVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLRRRK 434
           +P+F+ QTK KLVS + +  VE+ + +    +L++NP +A  +   +I+ S      R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVESVMGEKLSEFLLENPSDAKIVCGKIIDASRAREAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           KILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDAD
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDAD 402


>gi|41387082|gb|AAS01495.1| GyrB [Bacillus sp. SAFR-048]
          Length = 392

 Score =  230 bits (587), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 146/402 (36%), Positives = 219/402 (54%), Gaps = 14/402 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS EL V V R   I  QK+ RGIP + L+   +  ++ G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTELEVFVHRDGKIHYQKYERGIPAADLKVIGET-DRTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F+PD +IF +   ++   L    +  A+L+  +K      +E  +K      +EF+
Sbjct: 60  TITRFKPDSEIFTETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFH 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+K+Y++    ++  I  E       K G     VE A+ + E       S+ N I 
Sbjct: 114 YEGGIKSYVEHLNRSKQPIHEEPVYVDGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIH 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G + ALTR I  Y       +    ++  +D+      I+S+    P+F G
Sbjct: 171 TYEGGTHEVGFKTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNR 440
           QTKTKL + +A+   E+   + F+ +L++NP  A K+++   +        ++ +    R
Sbjct: 231 QTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV 
Sbjct: 291 KSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
            A  +KI +N ++  ++ A+G      +  E  RY KVIIMT
Sbjct: 351 KARLDKILSNDEVRTIITAIGTNIGGDFAIEKARYHKVIIMT 392


>gi|2353018|gb|AAB92594.1| gyrase beta subunit [Shewanella gelidimarina]
          Length = 419

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 156/426 (36%), Positives = 240/426 (56%), Gaps = 16/426 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS ++ +T+ R   ++ Q ++ G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSSKVQLTIRRDGKLYEQFYTHGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+++     N  GT + F P    F +   F    L K  +  ++L+  V      +++
Sbjct: 61  APVKEIGDSTN-TGTELRFWPSTDTFTNVL-FHFEILAKRVRELSFLNSGVGIRLIDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             +       +   + GG+  ++     N++ ++ E+F    E+      TVE A+ W +
Sbjct: 119 DKD-------DCLKYEGGISAFVDYLNVNKTPVNKEVFHFIHERDD--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R ALTR +  Y E      K   +   DD      
Sbjct: 170 GFQENIFCFTNNIPQRDGGTHLAGFRGALTRNLNNYMEKEGYNKKGKTNATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            ++SV   +P+F+ QTK KLVS + Q  VE  +R+     LV++P EA  ++  +I+ S 
Sbjct: 230 AVISVKGPDPKFSSQTKDKLVSNEVQTAVEQTMREHLPDSLVEHPNEAKLIVGKIIDASR 289

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK RE   RK A+    LPGKLADC +     +E++IVEGDSAGG  KQ RNR N
Sbjct: 290 AREAARKARELTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGITKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++ +++ L+ AL C   R +Y  +  RY  ++IM DA+
Sbjct: 350 QAILPLKGKILNVGKARFDKMLSSPEVVTLITALRCGIGRDEYDPDKNRYHHIVIMNDAE 409

Query: 546 VDGAHI 551
           V+GA I
Sbjct: 410 VEGAPI 415


>gi|146424684|dbj|BAF62102.1| DNA gyrase subunit B [Bradyrhizobium iriomotense]
          Length = 269

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 101/279 (36%), Positives = 154/279 (55%), Gaps = 11/279 (3%)

Query: 82  IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141
           +DNA+DE +AG+A  ++V L+ +  +TV D+GRGIPV+ H K    S  E+I+T LHAGG
Sbjct: 1   VDNAIDEALAGHATRVDVVLNPDNSVTVRDDGRGIPVDIH-KGEGISAAEVIMTQLHAGG 59

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD ++Y++SGGLHGVG+SVVNALS +L + + R N     +F+ G  ++PL+       
Sbjct: 60  KFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAHGDAVAPLKVVGDAPG 119

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           KRGT +TF    + F +   +D A L    +  A+L+  V    S  +   EK      E
Sbjct: 120 KRGTEVTFLASTQTFKN-VEYDFATLEHRLRELAFLNSGVNIILSDMRHAVEKR-----E 173

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCN 320
           E ++ GG++ +++    N+  +       ++E  G     VE A+ W +   E    + N
Sbjct: 174 EMHYSGGVEEFVKYLDRNKKALVPAPIMVRSESNGI---GVEAALWWNDSYHENVLCFTN 230

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359
            I   +GGTH +G R ALTR +  YAE    K  I++  
Sbjct: 231 NIPQRDGGTHLAGFRGALTRQVNGYAEANAKKEKIALTG 269


>gi|29652743|gb|AAO87341.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652767|gb|AAO87353.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652873|gb|AAO87406.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652954|gb|AAO87446.1| DNA gyrase B [Listeria monocytogenes]
 gi|29653002|gb|AAO87470.1| DNA gyrase B [Listeria monocytogenes]
          Length = 186

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 87/188 (46%), Positives = 117/188 (62%), Gaps = 2/188 (1%)

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A 
Sbjct: 1   LEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKAR 60

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ M
Sbjct: 61  LDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYM 120

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
             L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+KGLGEM
Sbjct: 121 RPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYKGLGEM 178

Query: 624 LASQLKET 631
              QL +T
Sbjct: 179 NPEQLWDT 186


>gi|198042714|gb|ACH81182.1| GyrB [Vibrio sp. UST010723-012]
          Length = 401

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 152/411 (36%), Positives = 231/411 (56%), Gaps = 15/411 (3%)

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           +I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +
Sbjct: 1   VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVTLTIHRGGHIHTQTYHHGEPQA 60

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
           PL       +K GT+I F P  + F +   F    L K  +  ++L+  V      ++E 
Sbjct: 61  PLAVIGDT-DKTGTQIRFWPSAETFSN-TEFHYDILAKRLRELSFLNSGVSIKLIDERE- 117

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
                  + + F F GG++ ++     N++ I  +IF    E++      VE A+ W + 
Sbjct: 118 -----EDKSDHFMFEGGIQAFVDHLNTNKTPIIEKIFHFDYERED--GIAVEVAMQWNDG 170

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVG 368
               I  + N I   +GGTH +G R ALTR +  + +      K   +   DD       
Sbjct: 171 FQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTA 230

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSE 427
           ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +LV+NP EA  +   +I+    
Sbjct: 231 VVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLVENPTEAKMVCSKIIDAARA 290

Query: 428 ERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
               R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQ
Sbjct: 291 REAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQ 350

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537
           A+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  
Sbjct: 351 AILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHN 401


>gi|145309487|dbj|BAF56641.1| DNA gyrase subunit B [Alicyclobacillus sacchari]
          Length = 389

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 139/399 (34%), Positives = 217/399 (54%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            + Y++SGGLHGVG SVVNALS+ L V V R   I  Q++ RG PL  L+   +  N+ G
Sbjct: 1   GAGYKVSGGLHGVGASVVNALSEWLKVEVHRDGKIHVQEYERGTPLYDLKIVGET-NRTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TFRPDP+IF +   F A  L    +  A+L+  ++     ++E        ++ E++
Sbjct: 60  TTVTFRPDPEIFTETTEFSAETLQNRLRELAFLNAGLEIVLEDERE------GGKRFEYH 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTIL 323
           + GG+K ++     ++ ++  E    +  K+     TVE A+ + +        + N I 
Sbjct: 114 YEGGVKEFVLYLNHSKDVLFPEPIYVQGVKE---EVTVEIALQYNDGYSSTLYSFANNIN 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G + ALTR I  Y       +    S+  DD+      ++SV + EP+F G
Sbjct: 171 TGEGGTHEAGFKSALTRIINDYGRRNNLVKGSDGSLTGDDVREGLTAVVSVKVPEPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + + +  VE+   +    +L +NP  A ++LE  +  +  R   ++ RE+ R 
Sbjct: 231 QTKTKLGNSEVRGIVESLFGERLQIFLEENPSVARRILEKCVLAARAREAAKRARELTRN 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKL DC       +EL++VEGDSAGGSAK  R+   QA+LPLRGKI+NV  
Sbjct: 291 KKMEVTSLPGKLTDCVSKDPEVSELYLVEGDSAGGSAKGGRDPQTQAILPLRGKIINVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +K+ +N++I  ++ A G     ++     RY K++I
Sbjct: 351 ARLDKVLSNEEIRAIITACGTGIGDEFDLSKARYHKIVI 389


>gi|190341288|gb|ACE74721.1| DNA gyrase subunit B [Bacillus megaterium]
          Length = 405

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 159/415 (38%), Positives = 234/415 (56%), Gaps = 14/415 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKF    Y++SGGLHGVG SVVNALS  L V V R   +  QK+ RG+P + L+   
Sbjct: 1   HAGGKFGGGGYKVSGGLHGVGASVVNALSTSLEVYVHRDGKVHYQKYERGVPAADLKVVG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +  +K GT I F PD +IF +   +D   L    +  A+L+  +K      +E       
Sbjct: 61  ET-DKTGTVIQFHPDGEIFTETLEYDFDTLANRLRELAFLNRGIKITIEDKRE------E 113

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS 317
            ++ E+++ GG+K+Y++     + +I  E    +  +      +VE AI + +       
Sbjct: 114 DKRREYHYEGGIKSYVEHLNRAKEVIHEEPIYIEGNRDNI---SVEIAIQYNDSYTSNLY 170

Query: 318 -YCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFI 374
            + N I T EGGTHE+G + ALTR I  YA           ++  +D+      I+S+  
Sbjct: 171 SFANNIHTYEGGTHEAGFKTALTRVINDYARKNSVFKDSDANLTGEDVREGITAIISIKH 230

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            +P+F GQTKTKL + +A+   ++   +  + YL++NPI A K++E  +  +  R+  +K
Sbjct: 231 PDPQFEGQTKTKLGNSEARTITDSVFAEHLETYLLENPIVAKKVIEKGLMAARARMAAKK 290

Query: 435 QRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            RE   RK+A+    LPGKLADCS      +EL++VEGDSAGGSAKQ R+R  QA+LPLR
Sbjct: 291 ARELTRRKSALEISNLPGKLADCSSKDPSISELYVVEGDSAGGSAKQGRSRHFQAILPLR 350

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           GKI+NV  A  +KI +N +I  ++ ALG      +     RY K++IMTDADVDG
Sbjct: 351 GKIINVEKARLDKILSNNEIRTIITALGTGIGDDFDISKARYHKIVIMTDADVDG 405


>gi|29652805|gb|AAO87372.1| DNA gyrase B [Listeria monocytogenes]
          Length = 197

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 87/193 (45%), Positives = 119/193 (61%), Gaps = 2/193 (1%)

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 7   RKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILN 66

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 67  VEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTL 126

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L    K    K  I R+K
Sbjct: 127 FYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASLDKD--TKYSIQRYK 184

Query: 619 GLGEMLASQLKET 631
           GLGEM   QL +T
Sbjct: 185 GLGEMNPEQLWDT 197


>gi|4996830|dbj|BAA78460.1| subunit B protein of DNA gyrase [bacterium rA8]
          Length = 303

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 101/309 (32%), Positives = 154/309 (49%), Gaps = 29/309 (9%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPN 126
           D   LHHL  EV+DN++DE +AGY + I V++  +G L+V+DNGRGIP          P 
Sbjct: 2   DGTGLHHLVFEVVDNSIDEALAGYCDDILVTIHADGSLSVIDNGRGIPTGVKMDDKHEPK 61

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV R+       FSR
Sbjct: 62  RSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSSWLKLTVRREGRTHEIDFSR 121

Query: 187 GIPLSP-----------LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           G   +              +     +KRGT++ F PD +IF +   F    L K  +  +
Sbjct: 122 GHVQNRLIEVVDGFEVSPMRIIGQTDKRGTKVHFLPDTEIFKENHEFRYEILAKRLRELS 181

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V+     +++  E         F   GG+K +++     + ++    F     + 
Sbjct: 182 FLNNGVRIRLKDERDGREDD-------FSGAGGVKGFVEFINGTKKVLHPTTFHAVGSRP 234

Query: 296 GT-------HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
                        VE ++ W +    ++  + N I   +GGTH +GLR A+TR I KY E
Sbjct: 235 AESYGGIPGTEIGVEVSMQWNDSYAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIE 294

Query: 348 LTQNKRAIS 356
             +  +   
Sbjct: 295 QNELAKKAK 303


>gi|7407140|gb|AAF61926.1| DNA gyrase B [Klebsiella pneumoniae subsp. ozaenae]
          Length = 390

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 145/401 (36%), Positives = 225/401 (56%), Gaps = 16/401 (3%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD+++Y++SGGLHGVG+SVVNALS +L + + R N +  Q +  G+P +PL    +  +K
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDNKVHKQMYEHGVPQAPLAVTGET-DK 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT + F P  + F +   F+   L K  +  ++L+  V       ++  E       + 
Sbjct: 60  TGTMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------DH 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N 
Sbjct: 113 FHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNN 169

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F
Sbjct: 170 IPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKF 229

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREV 438
           + QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+        RR +   
Sbjct: 230 SSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMT 289

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILN
Sbjct: 290 RRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILN 349

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
           V  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +
Sbjct: 350 VEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSI 390


>gi|4996836|dbj|BAA78463.1| subunit B protein of DNA gyrase [bacterium rA11]
          Length = 302

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 101/309 (32%), Positives = 154/309 (49%), Gaps = 29/309 (9%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPN 126
           D   LHHL  EV+DN++DE +AGY + I V++  +G L+V+DNGRGIP          P 
Sbjct: 1   DGTGLHHLVFEVVDNSIDEALAGYCDDILVTIHADGSLSVIDNGRGIPTGVKMDDKHEPK 60

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV R+       FSR
Sbjct: 61  RSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSSWLKLTVRREGRTHEIDFSR 120

Query: 187 GIPLSP-----------LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           G   +              +     +KRGT++ F PD +IF +   F    L K  +  +
Sbjct: 121 GHVQNRLIEVVDGFEVSPMRIIGQTDKRGTKVHFLPDTEIFKENHEFRYEILAKRLRELS 180

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V+     +++  E         F   GG+K +++     + ++    F     + 
Sbjct: 181 FLNNGVRIRLKDERDGREDD-------FSGAGGVKGFVEFINGTKKVLHPTTFHAVGSRP 233

Query: 296 GT-------HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
                        VE ++ W +    ++  + N I   +GGTH +GLR A+TR I KY E
Sbjct: 234 AESYGGIPGTEIGVEVSMQWNDSYAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIE 293

Query: 348 LTQNKRAIS 356
             +  +   
Sbjct: 294 QNELAKKAK 302


>gi|163256334|dbj|BAF95677.1| DNA gyrase subunit B [Bradyrhizobium sp. MAFF 210181]
          Length = 269

 Score =  230 bits (586), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 102/279 (36%), Positives = 154/279 (55%), Gaps = 11/279 (3%)

Query: 82  IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141
           +DNA+DE +AG+A  +EV L+ +  +TV D+GRGIPV+ H K    S  E+I+T LHAGG
Sbjct: 1   VDNAIDEALAGHATRVEVILNSDNSVTVRDDGRGIPVDIH-KGEGISAAEVIMTQLHAGG 59

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD ++Y++SGGLHGVG+SVVNALS +L + + R N     +F+ G  ++PL+       
Sbjct: 60  KFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAHGDAVAPLKVVGDAPG 119

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           +RGT +TF    + F +   +D A L    +  A+L+  V    S  +   EK      E
Sbjct: 120 RRGTEVTFLASTETFKN-IEYDFATLEHRLRELAFLNSGVNIVLSDMRHAIEKR-----E 173

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCN 320
           E ++ GG++ +++    N+  I       ++E  G     VE A+ W +   E    + N
Sbjct: 174 EMHYSGGVEEFVKYLDRNKKAIVPAPIMVRSEANGI---GVEAALWWNDSYHENVLCFTN 230

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359
            I   +GGTH +G R ALTR +  YAE    K  I++  
Sbjct: 231 NIPQRDGGTHLAGFRGALTRQVNGYAEANAKKEKIALTG 269


>gi|82568127|dbj|BAE48498.1| DNA gyrase B [Thermoactinomyces intermedius]
          Length = 391

 Score =  230 bits (586), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 154/400 (38%), Positives = 221/400 (55%), Gaps = 13/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y+ SGGLHGVG+SVVNALS  L V V R   I+ Q++ RG+P + LE   +     G
Sbjct: 1   GDGYKFSGGLHGVGVSVVNALSTWLSVEVKRDGKIYHQRYQRGVPEADLEVIGETEE-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+ITF+PDP+IF +   FD   L    +  A+L+G VK      +   EK        F 
Sbjct: 60  TKITFKPDPEIFTETTEFDFNILQNRLRELAFLNGGVKIILKDLRGEEEKE-----VVFQ 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           F GG++++++    NR +++      + E+       +E A+ + +     I SY N I 
Sbjct: 115 FEGGIRSFVEHLNRNREVLNQPPVYIQGERDSIL---IEIALQYNDSFTSNIYSYANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G + ALTR I  YA      +    ++  DD+      I+SV I +P+F G
Sbjct: 172 THEGGTHEAGFKSALTRVINDYARRNNLLKDNDSNLTGDDVREGLTAIISVKIMDPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNR 440
           QTKTKL + +A+   E    D F  YL ++P EA K++   V+     +  R+ +    R
Sbjct: 232 QTKTKLGNSEARSATEQLFADHFQTYLDEHPAEAKKIINKAVMASRARQAARKARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC+   A  +ELFIVEGDSAGG+AKQ R+R  QA+LPL+GKI+NV 
Sbjct: 292 KNALEVSALPGKLADCTSRSAQDSELFIVEGDSAGGTAKQGRDRMFQAILPLKGKIINVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  ++  +N +I  ++ ALG      +  E  RY K+II
Sbjct: 352 KARLDRALSNDEIRTIITALGTGIGDDFNIEKARYHKIII 391


>gi|290794985|gb|ADD64511.1| DNA gyrase B [Vibrio splendidus]
 gi|290794987|gb|ADD64512.1| DNA gyrase B [Vibrio splendidus]
          Length = 404

 Score =  230 bits (586), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 156/414 (37%), Positives = 231/414 (55%), Gaps = 15/414 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +  G P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GT I F P  + F +   F    L K  +  ++L+  V       +E        
Sbjct: 61  T-DKTGTEIRFWPSEETFNN-IEFHYDILAKRLRELSFLNSGVSIKLIDKRE------ED 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F + GG++ +++    N++ I  +IF    E++     TVE A+ W +     I  
Sbjct: 113 KMDHFEYEGGIQAFVEHLNTNKTPIIQKIFHFDHERED--GITVEVAMQWNDGYQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GG H +G R ALTR +  + +      K   S   DD       I+SV + 
Sbjct: 171 FTNNIPQRDGGAHLAGFRGALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE+ + +    +L++NP EA  +   +I         R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVD 547
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVD
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVD 404


>gi|148971379|gb|ABR20227.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 434

 Score =  230 bits (586), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 166/445 (37%), Positives = 235/445 (52%), Gaps = 31/445 (6%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD   Y+I+GGLHGVG+ VVNALS  L   V + N ++ + F +G P+
Sbjct: 1   EVIMTVLHAGGKFDKKVYKITGGLHGVGVHVVNALSSRLTAIVKKGNEVYFETFRQGAPV 60

Query: 191 SPLEKKEKVR-----------------NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
           + L   +                       GT I F PD +IF     F  + LL+  + 
Sbjct: 61  TKLASMKTSEFTKNPPEDMKNVSIQLEKSHGTIIWFYPDTEIFETV-DFSYSTLLERIRD 119

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            A+L+  +       +         +KE  +F GGL  +++   E  + +  E  + K E
Sbjct: 120 LAFLNPGISITIEDQR-------TDQKETLHFEGGLSAFVEYLGEGYNSVHKEPISNKAE 172

Query: 294 KKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK 352
            +    G VE+A  +    +  I S+ N I T EGGTH +G R  L+R I+ YA+     
Sbjct: 173 LEN---GIVEFAFLYNTGVSESIESFVNNINTIEGGTHVAGFRAGLSRAIQDYAKNKNMV 229

Query: 353 RAISI-ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           + +     +D+    V +L + I      GQTK+KL + +A+  V++        Y    
Sbjct: 230 KGVETITGEDVREGIVAVLHIKIAGTAVWGQTKSKLGNSEARGMVQSVTETYLREYFESY 289

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P  A  +++  +  +  R   RK R+ V RK+A+    LPGKLADCS N +  TEL+IVE
Sbjct: 290 PNIADLIVKRALAAAAAREASRKARDLVRRKSALESGGLPGKLADCSSNDSTRTELYIVE 349

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530
           G+SAGG+AKQARNR  QA+LPLRGKILNV  A   K   N  I DL+ A+G   +     
Sbjct: 350 GNSAGGTAKQARNRDFQAILPLRGKILNVEKATDVKTLENAIIRDLITAMGTNIKEDLDL 409

Query: 531 EDLRYEKVIIMTDADVDGAHIASLL 555
             LRY K+IIMTDADVDG+HI +LL
Sbjct: 410 TKLRYGKIIIMTDADVDGSHIRTLL 434


>gi|315282115|ref|ZP_07870596.1| DNA topoisomerase 4 subunit B [Listeria marthii FSL S4-120]
 gi|313614244|gb|EFR87907.1| DNA topoisomerase 4 subunit B [Listeria marthii FSL S4-120]
          Length = 134

 Score =  230 bits (586), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 72/133 (54%), Positives = 94/133 (70%), Gaps = 3/133 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           ++Y+  SI++LEGLE VR RP MYIG TD + LHHL  E++DN++DE +AG+   I V+L
Sbjct: 4   NDYNDDSIQVLEGLEAVRKRPAMYIGSTDVRGLHHLVYEIVDNSVDETLAGFGKKIVVTL 63

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGVGIS 160
             +  ++V D GRG+PV  H     K T+E+ILT LHAGGKF     Y+ SGGLHGVG S
Sbjct: 64  HEDNSVSVSDEGRGMPVGMHK--TGKPTVEVILTVLHAGGKFGQEGGYKTSGGLHGVGSS 121

Query: 161 VVNALSDELHVTV 173
           VVNALS+ L VT+
Sbjct: 122 VVNALSEWLIVTI 134


>gi|4996784|dbj|BAA78437.1| subunit B protein of DNA gyrase [bacterium rJ12]
          Length = 303

 Score =  230 bits (586), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 101/310 (32%), Positives = 151/310 (48%), Gaps = 31/310 (10%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPN 126
           D   LHHL  EV+DN++DE +AGY + I V++  +  ++V+DNGRGIP          P 
Sbjct: 2   DGTGLHHLVFEVVDNSIDEALAGYCDDILVTIHSDNSISVLDNGRGIPTGVKMDDKHEPK 61

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV R        FSR
Sbjct: 62  RSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKTLRLTVRRDGVTHQLDFSR 121

Query: 187 GIP------------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           G+             +SP++        RGT + F PD  IF +   F    L K  +  
Sbjct: 122 GVVQNRQIDIVDGAEVSPMKIAGPTEK-RGTEVRFLPDTDIFKENHDFHYEILAKRLREL 180

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V+     ++   E         F   GG+K +++     + ++    F     +
Sbjct: 181 SFLNHGVRIRLVDERSGKEDD-------FSGAGGVKGFVEFINGTKKVLHPTPFHATGSR 233

Query: 295 KGT-------HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYA 346
                         VE A+ W +    ++  + N I   +GGTH +GLR A+TR I KY 
Sbjct: 234 PAESYGGIPGTEIGVEVAMQWNDGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYI 293

Query: 347 ELTQNKRAIS 356
           E  +  +   
Sbjct: 294 EQNELAKKAK 303


>gi|300068744|dbj|BAJ10555.1| DNA gyrase subunit B [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius]
          Length = 389

 Score =  230 bits (586), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 138/399 (34%), Positives = 212/399 (53%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS+ L V V R   I+ Q++ RG PL  L+      +K G
Sbjct: 1   GKGYKVSGGLHGVGASVVNALSEWLRVEVHRDGHIYVQEYERGTPLYDLKVIG-TTDKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+++F+PDP+IF +   F A  L    +  A+L+  ++  +  ++E        ++  F 
Sbjct: 60  TKVSFKPDPEIFTETTVFSAETLANRLRELAFLNAGLEIVFEDERE------GGKRAVFK 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+  ++    +++ ++  +       K       VE A+ + +       S+ N I 
Sbjct: 114 YDGGVAEFVHWLNQSKDVLFDDPIYVSAVKDDV---AVEIALQYNDGFSATVYSFANNIN 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G + ALTR I  YA      +    S+  DD+      ++SV + EP+F G
Sbjct: 171 TAEGGTHEAGFKSALTRVINDYARRFGMLKSNDNSMTGDDVREGLTAVVSVKVPEPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + + +  VE    +    +L +NP  A K+++  I  +  R   R+ RE+ R 
Sbjct: 231 QTKTKLGNSEVRGIVETLFAERMQIFLEENPSIARKIVDKCILAARAREAARRARELTRS 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKL DC       +ELF+VEGDSAGGSAK  R+   QA+LPLRGKI+NV  
Sbjct: 291 KKMDVTSLPGKLTDCGSKDPERSELFLVEGDSAGGSAKMGRDPQTQAILPLRGKIINVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +K+  N++I  ++ A G      +     RY K++I
Sbjct: 351 ARLDKVLANEEIRAIITACGTGIGDDFDISKARYHKIVI 389


>gi|29652849|gb|AAO87394.1| DNA gyrase B [Listeria monocytogenes]
          Length = 181

 Score =  230 bits (586), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 86/183 (46%), Positives = 115/183 (62%), Gaps = 2/183 (1%)

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I  
Sbjct: 1   PGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILA 60

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ M  L++ 
Sbjct: 61  NEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDA 120

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
            ++++  PPL++I  G +  Y + +   +  L      G  K  I R+KGLGEM   QL 
Sbjct: 121 GYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYKGLGEMNPEQLW 178

Query: 630 ETA 632
           +T 
Sbjct: 179 DTT 181


>gi|308234846|ref|ZP_07665583.1| DNA gyrase, B subunit, C-terminal domain protein [Gardnerella
           vaginalis ATCC 14018]
          Length = 146

 Score =  230 bits (586), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 74/147 (50%), Positives = 95/147 (64%), Gaps = 1/147 (0%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
             +    + YDA S+ +LEGL+ VR RPGMYIG TD + L H   E+IDNA+DE +AG  
Sbjct: 1   MVSNKDREQYDADSLTVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNAVDEALAGAC 60

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           + I V+L  +G + V DNGRGIPV+  PK    + +E++LT LHAG KF N++Y  +GGL
Sbjct: 61  DHIIVTLHDDGSIEVADNGRGIPVDVEPK-TKLTGVEVVLTKLHAGAKFGNASYNAAGGL 119

Query: 155 HGVGISVVNALSDELHVTVARQNTIFS 181
           HGVG SVVNALS  L V V R      
Sbjct: 120 HGVGSSVVNALSLRLDVEVDRDGKTHH 146


>gi|62910165|gb|AAY21053.1| DNA gyrase beta subunit [Photobacterium angustum]
          Length = 401

 Score =  230 bits (586), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 151/411 (36%), Positives = 235/411 (57%), Gaps = 15/411 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I+ Q +  G+P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIQRAGHIYQQVYRHGVPDAPLAVIGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
                GTRI F P    F +   F    L K  +  ++L+  V    S ++E        
Sbjct: 61  TEK-TGTRIRFWPSEDTFTN-IEFHYDILAKRLRELSFLNSGVSINLSDERED------G 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +++ F + GG++ +++    N++ I  ++F   +E+      +VE A+ W +     I  
Sbjct: 113 KEDHFMYEGGIRAFVEHLNRNKTPIHPKVFHFDSERDD--GISVEVAMQWNDGFQESIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV + 
Sbjct: 171 FTNNIPQRDGGTHLAGFRGALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVISVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ +    +L++NP +A  +   +I+ S      R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKAAVESAMNEKLAEFLLENPADAKTVCTKIIDASRAREAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           KILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDA
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDA 401


>gi|68165242|gb|AAY87581.1| DNA gyrase subunit B [Vibrio cholerae]
          Length = 357

 Score =  230 bits (586), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 118/365 (32%), Positives = 195/365 (53%), Gaps = 15/365 (4%)

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+S
Sbjct: 1   IHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 59

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+++ +T+ R   I +Q +  G+P +PL    +   + GT + F P  + F +  
Sbjct: 60  VVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGET-ERTGTTVRFWPSAQTFTN-I 117

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L K  +  ++L+  V    + ++E  +K      + F + GG++ ++     N+
Sbjct: 118 EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEGGIQAFVTHLNRNK 171

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + I  ++F    E++     +VE A+ W +     I  + N I   +GGTH +G R ALT
Sbjct: 172 TPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALT 229

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  Y +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE
Sbjct: 230 RTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 289

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +A+ +    +L +NP EA  +   +I+        R+ +    RK A+    LPGKLADC
Sbjct: 290 SAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADC 349

Query: 457 SQNIA 461
            +   
Sbjct: 350 QEKDP 354


>gi|12060257|dbj|BAB20482.1| b subunit of GyrB typeII topoisomerase [Comamonas testosteroni]
          Length = 307

 Score =  230 bits (586), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 101/309 (32%), Positives = 153/309 (49%), Gaps = 29/309 (9%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPN 126
           D   LHHL  EV+DN++DE +AGY + I V++  +G L+V+DNGRGIP          P 
Sbjct: 4   DGTGLHHLVFEVVDNSIDEALAGYCDDILVTIHADGSLSVIDNGRGIPTGVKMDDKHEPK 63

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV+R        FSR
Sbjct: 64  RSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSVWLKLTVSRDGRRHEIDFSR 123

Query: 187 GIPLSP-----------LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           G   +              +     +KRGT++ F PD +IF +   F    L K  +  +
Sbjct: 124 GFVQNRLIEVVDGAEVSPMRVVGASDKRGTKVHFLPDQEIFKENFEFRYEILAKRLRELS 183

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V+     +++  E         F   GG+K ++Q     + ++    F     + 
Sbjct: 184 FLNNGVRIRLKDERDGKEDD-------FSGAGGVKGFVQFINGTKKVLHPTTFHANGSRP 236

Query: 296 GT-------HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
                        VE ++ W +    ++  + N I   +GGTH +GLR A+TR I KY  
Sbjct: 237 AETYGGIPGTEIGVEVSMQWNDSYAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIA 296

Query: 348 LTQNKRAIS 356
             +  +   
Sbjct: 297 DNEMAKKAK 305


>gi|68165236|gb|AAY87578.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|68165238|gb|AAY87579.1| DNA gyrase subunit B [Vibrio cholerae]
          Length = 357

 Score =  230 bits (586), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 118/365 (32%), Positives = 194/365 (53%), Gaps = 15/365 (4%)

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+S
Sbjct: 1   IHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 59

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+++ +T+ R   I +Q +  G+P +PL        + GT + F P  + F +  
Sbjct: 60  VVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDT-ERTGTTVRFWPSAQTFTN-I 117

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L K  +  ++L+  V    + ++E  +K      + F + GG++ ++     N+
Sbjct: 118 EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEGGIQAFVTHLNRNK 171

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + I  ++F    E++     +VE A+ W +     I  + N I   +GGTH +G R ALT
Sbjct: 172 TPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALT 229

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  Y +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE
Sbjct: 230 RTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 289

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +A+ +    +L +NP EA  +   +I+        R+ +    RK A+    LPGKLADC
Sbjct: 290 SAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADC 349

Query: 457 SQNIA 461
            +   
Sbjct: 350 QEKDP 354


>gi|110264823|gb|ABG56987.1| DNA gyrase beta subunit [Photobacterium kishitanii]
          Length = 401

 Score =  230 bits (585), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 152/410 (37%), Positives = 240/410 (58%), Gaps = 14/410 (3%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R+  I  Q +  G+P +PL      
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRKGHIHQQSYHHGVPDAPLAVIGDT 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            +K GTR+ F P  + F +   F    L K  +  ++L+  V      ++E        +
Sbjct: 61  -DKTGTRLRFWPSEETFTNNLEFQYEILAKRLRELSFLNSGVSIRLIDERE------EGK 113

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
           ++ F + GG++ +++    N++ I  ++F   +E++     TVE A+ W +     +  +
Sbjct: 114 QDHFMYEGGIRAFVEHLNRNKTPIHQKVFHFDSERED--GITVEVAMQWNDGFQEGVYCF 171

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +G R ALTR +  + +      K   +   DD     + ++SV + +
Sbjct: 172 TNNIPQRDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLIAVVSVKVPD 231

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F+ QTK KLVS + +  VE+A+ + F  +L+++P +A  +   +I+ S  R   RK R
Sbjct: 232 PKFSSQTKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKAR 291

Query: 437 -EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
               RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GK
Sbjct: 292 EMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGK 351

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           ILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDA
Sbjct: 352 ILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDA 401


>gi|183220092|ref|YP_001838088.1| DNA gyrase/topoisomerase subunit B [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189910212|ref|YP_001961767.1| DNA topoisomerase subunit B [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774888|gb|ABZ93189.1| DNA topoisomerase (ATP-hydrolyzing), subunit B [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167778514|gb|ABZ96812.1| DNA gyrase/topoisomerase, type IIa, subunit B [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 708

 Score =  230 bits (585), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 145/723 (20%), Positives = 258/723 (35%), Gaps = 102/723 (14%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIG----GT--------------------- 69
            A ++   + ++ + + L  +E VRMR GM++G     T                     
Sbjct: 1   MAQKTEKTSGNSRNFKKLSHVEHVRMRTGMWLGQNSLSTFEQHFFKRDNAGTYEVSHEEL 60

Query: 70  -DEKALHHLFSEVIDNAMDEVIA----------GYANLIEVSLDGN-GFLTVVDNGRGIP 117
            D  A      E   N +DE                N + V L  +   +T+ DNGRGIP
Sbjct: 61  SDIPAKIKCLDEACMNCVDEYRKNLNDKAIPEKDKMNKLIVQLSTDRKRVTIQDNGRGIP 120

Query: 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYE-ISGGLHGVGISVVNALSDELHVTVARQ 176
            +           E +   L  G  FD+   E    G +GVGIS+V  +S    V     
Sbjct: 121 AD---------NAEGVYLHLMYGENFDDLAKEDHVAGQNGVGISLVRMVSSFFRVKTING 171

Query: 177 NTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAY 236
              + + FS    +  + +  K+  +   R+    D           +A  +K  ++   
Sbjct: 172 GKAYKKMFSIHDDVKKVIRSFKLSKEDTERVHLYYDEHGTFVDCPLLSADQIKQLKAPCD 231

Query: 237 LSGRVKTCWSCDKEIAEKYGIPE--------------------------------KEEFY 264
            +G      +  KE        E                                +  F 
Sbjct: 232 KTGMTAVVETAKKEDHGTTVEFELNSAYFNNLDTSFNINLVKQYLQDIAMSNPGLEVVFI 291

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGK-TEKKGTHRGTVEWAIAWCEENPEITSYCNTIL 323
              G + Y   K  +    +SE+   K           +           +  ++ N+I 
Sbjct: 292 HKTGKEKYKFKKGFDEIFSNSEMVYYKLDYSDKASASQIHMDTYVVVGQNKNLTWVNSIF 351

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAG 381
             +GG+    L   L   I+K +++   ++ ++     +D+       +++ I  P F  
Sbjct: 352 CPQGGSAIEYLENRLCDEIRKKSQIVSLEKKLNTQCTRNDVRSCFHMYVNLRILNPRFKS 411

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           Q K+ L++        N          +   ++ T L+E +    E R + ++  +  + 
Sbjct: 412 QDKSYLINDL------NEDIRKSVDKHLDKLLKKTGLIEEIKMVMERRTQMKQLEDAQKG 465

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIV-EGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
                     KL   +        +  V EGDSA    + ARN     + PLRGK LN  
Sbjct: 466 LRKASRNNIPKLMPPTGKPNDPGRILFVAEGDSAIAGLRPARNPKLHGLFPLRGKPLNCK 525

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFF 559
                K   N+++ ++V  +G     + +  D L Y+K+ I+TDAD DG  I SL+L+FF
Sbjct: 526 GMSLAKALQNEEMKNIVAIVGLPLDQKVKSIDELNYDKISIITDADFDGYAIRSLMLSFF 585

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQ-----GTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           Y+   +L E   + + + PL+ +         ++V+  D+    K++    K G      
Sbjct: 586 YEYWPELFELGFINISAAPLYEVDVKWKDAKKETVFCIDDSDYDKLVARVNKQGAEITRK 645

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
            R KGLGE    +  + A+D     +  + I     +        +K     A++R + I
Sbjct: 646 KRNKGLGE-TGKEAMKYAVD---HCMTTITIGNKKTAKTTQDLWFHK---DYAEKRREAI 698

Query: 675 QER 677
            E 
Sbjct: 699 SEY 701


>gi|68165226|gb|AAY87573.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|68165228|gb|AAY87574.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|68165230|gb|AAY87575.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|68165232|gb|AAY87576.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|68165246|gb|AAY87583.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|68165248|gb|AAY87584.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|68165254|gb|AAY87587.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|68165256|gb|AAY87588.1| DNA gyrase subunit B [Vibrio cholerae]
          Length = 357

 Score =  230 bits (585), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 119/365 (32%), Positives = 195/365 (53%), Gaps = 15/365 (4%)

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+S
Sbjct: 1   IHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 59

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+++ +T+ R   I SQ +  G+P +PL    +   + GT + F P  + F +  
Sbjct: 60  VVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGET-ERTGTTVRFWPSAQTFTN-I 117

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L K  +  ++L+  V    + ++E  +K      + F + GG++ ++     N+
Sbjct: 118 EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEGGIQAFVTHLNRNK 171

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + I  ++F    E++     +VE A+ W +     I  + N I   +GGTH +G R ALT
Sbjct: 172 TPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALT 229

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  Y +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE
Sbjct: 230 RTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 289

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +A+ +    +L +NP EA  +   +I+        R+ +    RK A+    LPGKLADC
Sbjct: 290 SAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADC 349

Query: 457 SQNIA 461
            +   
Sbjct: 350 QEKDP 354


>gi|68165250|gb|AAY87585.1| DNA gyrase subunit B [Vibrio cholerae]
 gi|68165252|gb|AAY87586.1| DNA gyrase subunit B [Vibrio cholerae]
          Length = 357

 Score =  230 bits (585), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 119/365 (32%), Positives = 195/365 (53%), Gaps = 15/365 (4%)

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  ++V D+GRGIP E HP+  N S  E+I+T LHAGGKFD+++Y++SGGLHGVG+S
Sbjct: 1   IHEDNSVSVSDDGRGIPTEMHPE-ENVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 59

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+++ +T+ R   I +Q +  G+P +PL        + GT + F P  + F +  
Sbjct: 60  VVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDT-ERTGTTVRFWPSAQTFTN-I 117

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L K  +  ++L+  V    + ++E  +K      + F + GG++ ++     N+
Sbjct: 118 EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEGGIQAFVTHLNRNK 171

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + I  ++F    E++     +VE A+ W +     I  + N I   +GGTH +G R ALT
Sbjct: 172 TPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALT 229

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  Y +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE
Sbjct: 230 RTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 289

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +A+ +    +L +NP EA  +   +I+        R+ +    RK A+    LPGKLADC
Sbjct: 290 SAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADC 349

Query: 457 SQNIA 461
            +   
Sbjct: 350 QEKDP 354


>gi|6729162|dbj|BAA89714.1| DNA gyrase subunit B [Dactylosporangium matsuzakiense]
          Length = 391

 Score =  230 bits (585), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 129/399 (32%), Positives = 207/399 (51%), Gaps = 11/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVGISVVNALS  + + + + + ++ Q+++   P    +   +  ++ G
Sbjct: 1   GQAYAVSGGLHGVGISVVNALSTRIDLEIHKDDFVWRQRYNNSKPEPLQK--GEPTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF PDP IF     F    + +  Q  A+L+  +      ++   +      +  F 
Sbjct: 59  TSVTFWPDPTIFETTT-FVYEIIYRRIQEYAFLNRGLTIALRDER--PDTPEEKREVVFC 115

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           +  G+  +++     ++ I   +    +E  G     VE A+ W E     + ++ NTI 
Sbjct: 116 YENGIADFVRHLNATKTPIHRTVVEFGSEGDGI---AVEIAMQWNESYGESVYTFANTIN 172

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + KY    +  K    +  +D+      I+SV +  P+F GQ
Sbjct: 173 THEGGTHEEGFRSALTSVVNKYGADKKFLKGDEKLTGEDIREGLAAIISVKLANPQFEGQ 232

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TKTKL + +A+  V+    D    +  +NP E   ++    + +  R+   + R++ R+ 
Sbjct: 233 TKTKLGNTEARSFVQKVCNDRLVDWFDRNPAEVKTIITKASQAARARIAATQARKLARRK 292

Query: 443 AI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           ++     +PGKLADC  N     E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 293 SLLESGSMPGKLADCQSNDPRLCEVFIVEGDSAGGSAKQGRDPRVQAILPIRGKILNVEK 352

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG     ++  E LRY K+I+
Sbjct: 353 ARIDRVLKNNEVQALITALGTGIHDEFDIEKLRYHKLIL 391


>gi|148793360|gb|ABR12744.1| DNA gyrase beta subunit [Photobacterium kishitanii]
          Length = 403

 Score =  230 bits (585), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 153/412 (37%), Positives = 241/412 (58%), Gaps = 14/412 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLH VG+SVVNALS+++ +T+ R+  I  Q +  G+P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHRVGVSVVNALSEKVELTINRKGHIHQQSYHHGVPDAPLAVIGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GTR+ F P  + F +   F    L K  +  ++L+  V      ++E        
Sbjct: 61  T-DKTGTRLRFWPSEETFTNNLEFQYEILAKRLRELSFLNSGVSIRLIDERE------EG 113

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +++ F + GG++ +++    N++ I  ++F   +E++     TVE A+ W +     +  
Sbjct: 114 KQDHFMYEGGIRAFVEHLNRNKTPIHQKVFHFDSERED--GITVEVAMQWNDGFQEGVYC 171

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD     + ++SV + 
Sbjct: 172 FTNNIPQRDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLIAVVSVKVP 231

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           +P+F+ QTK KLVS + +  VE+A+ + F  +L+++P +A  +   +I+ S  R   RK 
Sbjct: 232 DPKFSSQTKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKA 291

Query: 436 R-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           R    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 292 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 351

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           KILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDAD
Sbjct: 352 KILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDAD 403


>gi|300068735|dbj|BAJ10552.1| DNA gyrase subunit B [Alicyclobacillus sp. P2]
          Length = 389

 Score =  230 bits (585), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 138/399 (34%), Positives = 213/399 (53%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS+ L V V R   I+ Q++ RG PL  L+      +K G
Sbjct: 1   GKGYKVSGGLHGVGASVVNALSEWLRVEVHRDGHIYVQEYERGTPLYDLKVIG-TTDKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+++F+PDP+IF +   F A  L    +  A+L+  ++  +  ++E        ++  F 
Sbjct: 60  TKVSFKPDPEIFTETTVFSAETLANRLRELAFLNAGLEIVFEDERE------GGKRAVFK 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+  +++   +++ ++  +       K       VE A+ + +       S+ N I 
Sbjct: 114 YDGGVAEFVRWLNQSKDVLFDDPIYVSAVKDDV---AVEIALQYNDGFSATVYSFANNIN 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G + ALTR I  YA      +    S+  DD+      ++SV + EP+F G
Sbjct: 171 TAEGGTHEAGFKSALTRVINDYARRFGMLKSNDNSMTGDDVREGLTAVVSVKVPEPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + + +  VE    +    +L +NP  A K+++  I  +  R   R+ RE+ R 
Sbjct: 231 QTKTKLGNSEVRGIVETLFAERMQIFLEENPSIARKIVDKCILAARAREAARRARELTRS 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKL DC       +ELF+VEGDSAGGSAK  R+   QA+LPLRGKI+NV  
Sbjct: 291 KKMDVTSLPGKLTDCGSKDPERSELFLVEGDSAGGSAKMGRDPQTQAILPLRGKIINVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +K+  N++I  ++ A G      +     RY K++I
Sbjct: 351 ARLDKVLANEEIRAIITACGTGIGDDFDISKARYHKIVI 389


>gi|68445362|dbj|BAE03182.1| DNA gyrase subunit B [actinobacterium Aac-9]
          Length = 399

 Score =  230 bits (585), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 131/401 (32%), Positives = 215/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG SVVNALS+ L V V     +++Q++ RG+P +PL K  +   + G
Sbjct: 1   GGGYAVSGGLHGVGSSVVNALSNRLTVAVKTDGHLWTQEYIRGVPTAPLLK-GEATEETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T + F  D +IF     ++   L +  Q  A+L+  V      ++ E  ++ G P    F
Sbjct: 60  TTVAFWADDEIFETTT-YNFETLSRRFQEMAFLNRGVSIELIDERPEYKDEEGNPRSVRF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG+  +++     +  +          +    + + E A+ W  +    + ++ N I
Sbjct: 119 KYDGGIADFVRHINAAKGEMVHPQVIEFGSEDKERKISAEVALQWNNQYSESVYTFANVI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
            T +GGTHE G R A+T  + +YA+  Q   ++  ++  +D+    V I+SV + EP+F 
Sbjct: 179 HTPDGGTHEEGFRSAMTNVVNRYAKDKQLLKEKDDNLSGEDIREGLVAIVSVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTK KL + +A+  V+    +    +  +NP EA  ++  +I+ +  R+  RK RE+ R
Sbjct: 239 GQTKAKLGNTEARTFVQKLTYEAMADWFDRNPNEARDIIRKLIQAATARIAARKARELTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +   + LPGKL+DC        E+F+VEGDSAGGSAKQ R+   QA++P+RGKILNV
Sbjct: 299 RKGLLESMALPGKLSDCQSTNPAECEIFVVEGDSAGGSAKQGRDPRVQAIMPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +K+  N ++  L+ ALG      +    LRY K+++
Sbjct: 359 EKARIDKVLQNTEVQGLISALGTGIHDDFDISKLRYHKIVL 399


>gi|68165234|gb|AAY87577.1| DNA gyrase subunit B [Vibrio cholerae]
          Length = 357

 Score =  230 bits (585), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 118/365 (32%), Positives = 193/365 (52%), Gaps = 15/365 (4%)

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+S
Sbjct: 1   IHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 59

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+++ +T+ R   I +Q +  G+P +PL        + GT + F P  + F +  
Sbjct: 60  VVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDT-ERTGTTVRFWPSAQTFTN-I 117

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L K  +  ++L+  V      ++E  +K      + F + GG++ ++     N+
Sbjct: 118 EFHYDILAKRLRELSFLNSGVSIKLIDEREEDKK------DHFMYEGGIQAFVTHLNRNK 171

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + I  ++F    E++     +VE A+ W +     I  + N I   +GGTH +G R ALT
Sbjct: 172 TPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALT 229

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  Y +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE
Sbjct: 230 RTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 289

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +A+ +    +L +NP EA  +   +I+        R+ +    RK A+    LPGKLADC
Sbjct: 290 SAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADC 349

Query: 457 SQNIA 461
            +   
Sbjct: 350 QEKDP 354


>gi|155029071|dbj|BAF75421.1| DNA gyrase B [Halobacillus faecis]
          Length = 389

 Score =  230 bits (585), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 144/399 (36%), Positives = 214/399 (53%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS +L V V R   I  Q + RG+P   L+   +  ++ G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTKLEVFVHRDGNIHYQAYHRGVPEEDLKVIGET-DQTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           TRI F+PDP+IF +   +    L    +  A+L+  +       +   E         +Y
Sbjct: 60  TRIQFKPDPEIFSETQEYKFEILANRLRELAFLNKGLTISIEDKRTDEE------PVNYY 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILT 324
           F GG+ +Y++     R  +    F    + + +    +++   +      I SY N I T
Sbjct: 114 FEGGILSYVEHMNRTRETLHDAFFIEDEQDEISXEIAMQYNDGFA---SNIYSYANNIHT 170

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQ 382
            EGGTHESG +  LTR I  YA      +    ++  DD+      I+S+   +P+F GQ
Sbjct: 171 YEGGTHESGFKTGLTRVINDYARKNNMFKETDPNLTGDDVREGLTAIISIKHPDPQFEGQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TKTKL + +A+   ++   + F  +L +NP  A  ++E  +  S  R+  +K RE   RK
Sbjct: 231 TKTKLGNSEARTVTDSLFSESFTKFLFENPNMAKTIVEKGLMASRARMAAKKARELTRRK 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            A+    LPGKLADCS   A+ +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKI+NV  
Sbjct: 291 NALEVSNLPGKLADCSSKDANISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +KI +N ++  ++ ALG     ++     RY K++I
Sbjct: 351 ARLDKILSNNEVRAIITALGTGIGEEFDISKARYHKIVI 389


>gi|4996800|dbj|BAA78445.1| subunit B protein of DNA gyrase [bacterium rM6]
          Length = 297

 Score =  230 bits (585), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 100/303 (33%), Positives = 149/303 (49%), Gaps = 29/303 (9%)

Query: 73  ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKST 129
            LHHL  EV+DN++DE +AGY + I V++  +G L+V DNGRGIP          P +S 
Sbjct: 1   GLHHLVFEVVDNSIDEALAGYCDDIAVTIHADGSLSVTDNGRGIPTGVKMDDKHEPKRSA 60

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV R+  +   +F+RG  
Sbjct: 61  AEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKWLRLTVRREGQVHQIEFARGFV 120

Query: 190 L-----------SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLS 238
                       +   K       RGT + F PD +IFGD   F    L K  +  ++L+
Sbjct: 121 QNRQIEVVDGFETSPMKITGPTEDRGTAVRFLPDTEIFGDNHDFHYDTLAKRLRELSFLN 180

Query: 239 GRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT- 297
             V+     ++   E         F   GG+  +++     + ++    F     +    
Sbjct: 181 NGVRIRLIDERTGKEDD-------FSGAGGVLGFVKFISTGKKVLHPTPFHASGTRPAET 233

Query: 298 ------HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
                     VE A+ W +    ++  + N I   +GGTH +GLR A+TR I KY    +
Sbjct: 234 YGGIPGTEIGVEVAMQWNDGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIADNE 293

Query: 351 NKR 353
             +
Sbjct: 294 FAK 296


>gi|151547439|gb|ABS12463.1| topoisomerase II [Bacillus thuringiensis]
          Length = 390

 Score =  229 bits (584), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 146/400 (36%), Positives = 219/400 (54%), Gaps = 14/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS EL V V R   I  QK+ RGIP++ L+      +K G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F+PDP+IF +   ++   L    +  A+L+  +K      +E  +K      +EF+
Sbjct: 60  TITRFKPDPEIFKETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFH 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+K+Y++    ++  I  E    +  K G     VE A+ + E       S+ N I 
Sbjct: 114 YEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIH 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G + ALTR I  Y       +    ++  +D+      I+S+    P+F G
Sbjct: 171 TYEGGTHEVGFKTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNR 440
           QTKTKL + +A+   E+   + F+ +L++NP  A K+++   +        ++ +    R
Sbjct: 231 QTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV 
Sbjct: 291 KSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +KI +N ++  ++ A+G      +  E  RY KVII
Sbjct: 351 KARLDKILSNDEVRTIITAIGTNIGGDFDIEKARYHKVII 390


>gi|4996826|dbj|BAA78458.1| subunit B protein of DNA gyrase [bacterium rA6]
          Length = 301

 Score =  229 bits (584), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 100/307 (32%), Positives = 153/307 (49%), Gaps = 29/307 (9%)

Query: 72  KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKS 128
             LHHL  EV+DN++DE +AGY + I V++  +G L+V+DNGRGIP          P +S
Sbjct: 2   TGLHHLVFEVVDNSIDEALAGYCDDILVTIHADGSLSVIDNGRGIPTGVKMDDKHEPKRS 61

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
             EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV R+       FSRG 
Sbjct: 62  AAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSSWLKLTVRREGRTHEIDFSRGH 121

Query: 189 PLSP-----------LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
             +              +     +KRGT++ F PD +IF +   F    L K  +  ++L
Sbjct: 122 VQNRLIEVVDGFEVSPMRIIGQTDKRGTKVHFLPDQEIFKENFEFRYEILAKRLRELSFL 181

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V+     +++  E         F   GG+K +++     + ++    F     +   
Sbjct: 182 NNGVRIRLKDERDGREDD-------FSGAGGVKGFVEFINGTKKVLHPTTFHAVGSRPAE 234

Query: 298 -------HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
                      VE ++ W +    ++  + N I   +GGTH +GLR A+TR I KY E  
Sbjct: 235 SYGGIPGTEIGVEVSMQWNDSYAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIEQN 294

Query: 350 QNKRAIS 356
           +  +   
Sbjct: 295 ELAKKAK 301


>gi|289623440|emb|CBK13149.1| DNA gyrase subunit B [Paenibacillus anaericanus]
 gi|289623442|emb|CBK13150.1| DNA gyrase subunit B [Paenibacillus ginsengisoli]
          Length = 389

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 151/400 (37%), Positives = 222/400 (55%), Gaps = 15/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG+SVVNALS++L V V R+  I  Q++ RG P   L          G
Sbjct: 1   GGGYKVSGGLHGVGVSVVNALSEKLVVEVKREGHIHQQEYRRGAPQYDLRIIGDTEE-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+  F PDP+IF +   FD   L+   +  A+L+  +    + ++           E F+
Sbjct: 60  TKTRFHPDPEIFTETTVFDYNILVTRIRELAFLNKGINISLTDER-------TGVSEVFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K Y++   ++R +I  E    + ++    +  +E ++ + +     I S+ N I 
Sbjct: 113 YEGGIKEYVKYLNQHREVIHEEPIYVEGQRD---QIQIEVSLQYNDSYSENIFSFANNIN 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHESG + ALTR I  YA      +    ++  DD+      I+SV I EP+F G
Sbjct: 170 THEGGTHESGFKSALTRIINDYARKNNLIKDNDSNLTGDDVREGLTAIISVKIPEPQFEG 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + + +  VE+   +    ++ +NP  + ++L+  ++ S  R   RK RE   R
Sbjct: 230 QTKTKLGNSEVRGIVESLFAERLQEFMEENPSVSRRILDKGLQASRAREAARKARELTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS   A  +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 290 KSALEVSALPGKLADCSSKDASISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  ++I  N +I  ++ ALG     ++     RY KVII
Sbjct: 350 KARLDRILGNAEIRAIITALGTGIGEEFDISKARYHKVII 389


>gi|85541249|gb|ABC70865.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Newlands]
          Length = 397

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 146/404 (36%), Positives = 224/404 (55%), Gaps = 16/404 (3%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
            FD+++Y++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P +PL       +
Sbjct: 4   NFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-D 62

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           K GT + F P  + F +   F+   L K  +  ++L+  V       ++  E       +
Sbjct: 63  KTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------D 115

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N
Sbjct: 116 HFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTN 172

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+
Sbjct: 173 NIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPK 232

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQRE 437
           F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+        RR +  
Sbjct: 233 FSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPFDAKIVVGKIIDAARAREAARRAREM 292

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
             RK A+    LPGKLADC +     +EL++VEGDSAGG AKQ RNR NQA+LPL+GKIL
Sbjct: 293 TRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGFAKQGRNRKNQAILPLKGKIL 352

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
           NV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 353 NVEKARFDKMLSSQEVATLIPALGCGIGRDEYNPDKLRYHSIII 396


>gi|60459488|gb|AAX20080.1| DNA gyrase subunit B [Leptospira santarosai serovar Alexi]
          Length = 143

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 80/144 (55%), Positives = 109/144 (75%), Gaps = 1/144 (0%)

Query: 49  IRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLT 108
           I+ILEGLE VR RPGMYIG  DE  LH +  EV+DN++DE +AG+   I++S+  +  + 
Sbjct: 1   IKILEGLEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEIKISILPDNIIE 60

Query: 109 VVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDE 168
           V DNGRGIPV+ HP     ST+E+++T LHAGGKF+N  Y++SGGLHGVG+SVVNALS+ 
Sbjct: 61  VKDNGRGIPVDIHP-DKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEY 119

Query: 169 LHVTVARQNTIFSQKFSRGIPLSP 192
           L V V ++  I++QK+ +GIP+SP
Sbjct: 120 LEVEVHQKGKIYTQKYEKGIPVSP 143


>gi|68165240|gb|AAY87580.1| DNA gyrase subunit B [Vibrio cholerae]
          Length = 357

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 120/365 (32%), Positives = 195/365 (53%), Gaps = 15/365 (4%)

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+S
Sbjct: 1   IHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 59

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+++ +T+ R   I SQ +  G+P +PL    +   + GT + F P  + F +  
Sbjct: 60  VVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGET-ERTGTTVRFWPSAQTFTN-I 117

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L K  +  ++L+  V    S ++E  +K      + F + GG++ ++     N+
Sbjct: 118 EFHYDILAKRLRELSFLNSGVSIKLSDEREEDKK------DHFMYEGGIQAFVTHLNRNK 171

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + I  ++F    E++     +VE A+ W +     I  + N I   +GGTH +G R ALT
Sbjct: 172 TPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALT 229

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  Y +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE
Sbjct: 230 RTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 289

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +A+ +    +L +NP EA  +   +I+        R+ +    RK A+    LPGKLADC
Sbjct: 290 SAMNEKLADFLAENPSEAKHVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADC 349

Query: 457 SQNIA 461
            +   
Sbjct: 350 QEKDP 354


>gi|35210331|dbj|BAC92677.1| gyrase B subunit [Alicyclobacillus sp. DSM 11984]
          Length = 389

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 136/399 (34%), Positives = 212/399 (53%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS+ + V V R   I+ Q++ RG PL  L+      ++ G
Sbjct: 1   GKGYKVSGGLHGVGASVVNALSEWMRVEVHRDGHIYVQEYERGTPLYDLKVIG-TTDQTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+++F+PDP+IF +   F A  L    +  A+L+  ++  +  ++E        ++  F 
Sbjct: 60  TKVSFKPDPEIFTETTVFSAETLANRLRELAFLNAGLEIVFEDERE------GGKRAVFK 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+  ++    +++ ++  +       K       VE A+ + +       S+ N I 
Sbjct: 114 YDGGVAEFVHWLNQSKDVLFDDPIYVSALKDDV---AVEIALQYNDGFSATVYSFANNIN 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G + ALTR I  YA      +    S+  DD+      ++SV + EP+F G
Sbjct: 171 TAEGGTHEAGFKSALTRVINDYARRFGMLKSNDNSMTGDDVREGLTAVVSVKVPEPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + + +  VE    +    +L +NP  A K+++  I  +  R   R+ RE+ R 
Sbjct: 231 QTKTKLGNSEVRGIVETLFAERMQIFLEENPSVARKIVDKCILAARAREAARRARELTRS 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKL DC       +ELF+VEGDSAGGSAK  R+   QA+LPLRGKI+NV  
Sbjct: 291 KKMDVTSLPGKLTDCGSKDPERSELFLVEGDSAGGSAKMGRDPQTQAILPLRGKIINVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +K+  N++I  ++ A G      +     RY K++I
Sbjct: 351 ARLDKVLANEEIRAIITACGTGIGDDFDISKARYHKIVI 389


>gi|4996810|dbj|BAA78450.1| subunit B protein of DNA gyrase [bacterium rM12]
          Length = 300

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 101/306 (33%), Positives = 154/306 (50%), Gaps = 29/306 (9%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPN 126
           D   LHHL  EV+DN++DE +AGY + I V++  +G L+V+DNGRGIP          P 
Sbjct: 1   DGTGLHHLVFEVVDNSIDEALAGYCDDILVTIHADGSLSVIDNGRGIPTGVKMDDKHEPK 60

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV R+       FSR
Sbjct: 61  RSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSSWLKLTVRREGRTHEIDFSR 120

Query: 187 GIPLSP-----------LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           G   +              +     +KRGT++ F PD +IF +   F    L K  +  +
Sbjct: 121 GHVQNRLIEVVDGFEVSPMRIIGQTDKRGTKVHFLPDTEIFKENHEFRYEILAKRLRELS 180

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V+     +++  E         F   GG+K +++     + ++    F     + 
Sbjct: 181 FLNNGVRIRLKDERDGREDD-------FSGAGGVKGFVEFINGTKKVLHPTTFHAVGSRP 233

Query: 296 GT-------HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
                        VE ++ W +    ++  + N I   +GGTH +GLR A+TR I KY E
Sbjct: 234 AESYGGIPGTEIGVEVSMQWNDSYAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIE 293

Query: 348 LTQNKR 353
             +  +
Sbjct: 294 QNELAK 299


>gi|35210327|dbj|BAC92675.1| gyrase B subunit [Alicyclobacillus acidocaldarius]
 gi|300068738|dbj|BAJ10553.1| DNA gyrase subunit B [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius]
 gi|300068741|dbj|BAJ10554.1| DNA gyrase subunit B [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius]
          Length = 389

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 139/399 (34%), Positives = 215/399 (53%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS+ + V V R   I+ Q++ RG PL  L+      +K G
Sbjct: 1   GKGYKVSGGLHGVGASVVNALSEWMRVEVHRDGRIYVQEYERGTPLYDLKVIG-TTDKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+++F+PDP+IF +   F A  L+   +  A+L+  ++  +  ++E        ++  F 
Sbjct: 60  TKVSFKPDPEIFTETTVFSAETLMNRLRELAFLNAGLEIVFEDERE------GGKRAVFK 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+  +++   +++ ++  +       K       VE A+ + +       S+ N I 
Sbjct: 114 YDGGVAEFVRWLNQSKDVLFDDPIYVSAVKDDV---AVEIALQYNDGYAATVYSFANNIN 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G + ALTR I  YA      +    S+  DD+      ++SV + EP+F G
Sbjct: 171 TAEGGTHEAGFKSALTRVINDYARRYGFLKSNDNSMTGDDVREGLTAVVSVKVPEPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + + +  VE    +    +L +NP  A K++E  I  +  R   R+ RE+ R 
Sbjct: 231 QTKTKLGNSEVRGIVETLFAERMQMFLEENPSIARKIVEKCILAARAREAARRARELTRS 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKL DCS      +ELF+VEGDSAGGSAK  R+   QA+LPLRGKI+NV  
Sbjct: 291 KKMDVTSLPGKLTDCSSKDPERSELFLVEGDSAGGSAKMGRDPQTQAILPLRGKIINVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +K+  N++I  ++ A G      +     RY K++I
Sbjct: 351 ARLDKVLANEEIRAIITACGTGIGDDFDISKARYHKIVI 389


>gi|126035244|gb|ABN72375.1| gyrase B subunit [Enterobacter cloacae]
          Length = 392

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 149/403 (36%), Positives = 229/403 (56%), Gaps = 16/403 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q ++ G+P +PL       +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYTHGVPQAPLAVTGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F+
Sbjct: 60  TMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDNKE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    R
Sbjct: 230 QTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMT 392


>gi|119369930|gb|ABL67979.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 420

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 155/435 (35%), Positives = 221/435 (50%), Gaps = 25/435 (5%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD S+Y++SGGLHGVG+SVVNALSD L + + R   +  Q++  G PL
Sbjct: 1   EVIMTVLHAGGKFDASSYKVSGGLHGVGVSVVNALSDYLLLIIHRDGKVHRQEYRLGDPL 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL        +RGT I F+P  +IF     F+   L K  +  ++L+  V+     ++E
Sbjct: 61  APLAPVGP-SEQRGTTIRFKPSAQIF-THIQFNHDILAKRLRELSFLNSGVRIELIDERE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                     + F   GGL+ +++    +R+ +   I   KT+       T+E A+ W +
Sbjct: 119 NT-------SDVFQHEGGLQAFVKYLNRSRTPVHESIPWFKTQDGPV---TIEVALQWND 168

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMISAV 367
                +  Y N I   +GGTH +G R ALTR +  Y   E++  K  +    DD      
Sbjct: 169 SYQESMFCYTNNIPQKDGGTHLAGFRSALTRTLNDYIEKEMSAKKDKVPTTGDDAREGLT 228

Query: 368 GILSVFIREPEF----AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
            ILSV + +PE      GQ          +   E                   +      
Sbjct: 229 AILSVKLPDPEVLLADQGQAGLLRGQGHRRGGGERKAAGFSAWAPAGRQSHHRQ---DAR 285

Query: 424 ERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483
                   R+ +    RK A+    LPGKLADC +     +E+FIVEGDSAGGSAKQ R+
Sbjct: 286 GGRAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSEIFIVEGDSAGGSAKQGRD 345

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMT 542
           R  QA+LPL+GKILNV  A  +K+ ++ ++  L+ ALGC       +   LRY +VIIMT
Sbjct: 346 RRTQAILPLKGKILNVEKARFDKMLSSAEVGTLITALGCGIGKDDFDLAKLRYHRVIIMT 405

Query: 543 --DADVDGAHIASLL 555
             DADVDG+HI +LL
Sbjct: 406 DADADVDGSHIRTLL 420


>gi|110264825|gb|ABG56988.1| DNA gyrase beta subunit [Photobacterium kishitanii]
          Length = 400

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 151/409 (36%), Positives = 239/409 (58%), Gaps = 14/409 (3%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R+  I  Q +  G+P +PL      
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRKGHIHQQSYHHGVPDAPLAVIGDT 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            +K GTR+ F P  + F +   F    L K  +  ++L+  V      ++E        +
Sbjct: 61  -DKTGTRLRFWPSEETFTNNLEFQYEILAKRLRELSFLNSGVSIRLIDERE------EGK 113

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
           ++ F + GG++ +++    N++ I  ++F   +E++     TVE A+ W +     +  +
Sbjct: 114 QDHFMYEGGIRAFVEHLNRNKTPIHQKVFHFDSERED--GITVEVAMQWNDGFQEGVYCF 171

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +G R ALTR +  + +      K   +   DD     + ++SV + +
Sbjct: 172 TNNIPQRDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLIAVVSVKVPD 231

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F+ QTK KLVS + +  VE+A+ + F  +L+++P +A  +   +I+ S  R   RK R
Sbjct: 232 PKFSSQTKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKAR 291

Query: 437 -EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
               RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GK
Sbjct: 292 EMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGK 351

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTD 543
           ILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTD
Sbjct: 352 ILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTD 400


>gi|29652835|gb|AAO87387.1| DNA gyrase B [Listeria monocytogenes]
          Length = 185

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 87/187 (46%), Positives = 116/187 (62%), Gaps = 2/187 (1%)

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  
Sbjct: 1   EISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARL 60

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ M 
Sbjct: 61  DRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMR 120

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
            L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+KGLGEM 
Sbjct: 121 PLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYKGLGEMN 178

Query: 625 ASQLKET 631
             QL +T
Sbjct: 179 PEQLWDT 185


>gi|41387076|gb|AAS01492.1| GyrB [Bacillus sp. FO-011]
          Length = 392

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 147/402 (36%), Positives = 222/402 (55%), Gaps = 14/402 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS EL V V R+  I  QK+ RGIP++ L+      ++ G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F+PDP+IF +   ++   L    +  A+L+  +K      +E  +K      +EF+
Sbjct: 60  TITRFKPDPEIFQETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFH 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+K+Y++    ++  I  E    +  K G     VE ++ + E       S+ N I 
Sbjct: 114 YEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIH 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G + ALTR I  Y       +    ++  +D+      I+S+    P+F G
Sbjct: 171 TYEGGTHEVGFKTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNR 440
           QTKTKL + +A+   E+   + F+ +L++NP  A K++E   +        ++ +    R
Sbjct: 231 QTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV 
Sbjct: 291 KSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
            A  +KI +N ++  ++ A+G      +  E  RY KVIIMT
Sbjct: 351 KARLDKILSNDEVRTIITAIGTNIGGDFDIEKARYHKVIIMT 392


>gi|33145998|emb|CAD57639.2| DNA gyrase subunit B [Vibrio splendidus]
          Length = 404

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 155/414 (37%), Positives = 230/414 (55%), Gaps = 15/414 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +  G P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GT I F P  + F +   F    L K  +  ++L+  V       +E        
Sbjct: 61  T-DKTGTEIRFWPSEETFNN-IEFHYDILAKRLRELSFLNSGVSIKLIDKRE------ED 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F + GG++ +++    N++ I  +IF    E++     TVE A+ W +     I  
Sbjct: 113 KMDHFEYEGGIQAFVEHLNTNKTPIIQKIFHFDHERED--GITVEVAMQWNDGYQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GG H +G R ALTR +  + +      K   S   DD       I+SV + 
Sbjct: 171 FTNNIPQRDGGAHLAGFRGALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE+ + +    +L++NP EA  +   +I         R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVD 547
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIM DADVD
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMADADVD 404


>gi|82568133|dbj|BAE48501.1| DNA gyrase B [Laceyella putida]
          Length = 390

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 150/400 (37%), Positives = 215/400 (53%), Gaps = 14/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y+ SGGLHGVG+SVVNALS+ L V V R+  I  Q++ RG+P   LE   +     G
Sbjct: 1   GEGYKFSGGLHGVGVSVVNALSEWLEVEVKREGKIHRQRYRRGVPEHDLEVVGQTEE-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T ITF+PD  IF +   +D   L    +  A+L+  VK      +         ++  F 
Sbjct: 60  TTITFKPDATIFTETTVYDYDILQNRLRELAFLNRGVKIILEDKRG------EGKQVVFQ 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG++++++    NR ++         EK+  H    E A+ + +       SY N I 
Sbjct: 114 YEGGIQSFVEHLNRNREVLHEPPIYIMGEKESIH---AEIAMQYNDSFSSNIYSYANNIH 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHESG + ALTR I  YA      +    ++  DD+      I+SV I +P+F G
Sbjct: 171 THEGGTHESGFKSALTRVINDYARRNNMLKDNDSNLTGDDVREGLTAIISVKISDPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNR 440
           QTKTKL + +A+   E    + F  YL +NP  A K++   V+        R+ +    R
Sbjct: 231 QTKTKLGNSEARTATEQLFTEHFQTYLEENPAVAKKVIGKAVMAARAREAARKARELTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC+   A  +ELFIVEGDSAGG+AKQ R+R  QA+LPLRGK+LNV 
Sbjct: 291 KNALEVSSLPGKLADCTSRNAAESELFIVEGDSAGGTAKQGRDRMFQAILPLRGKVLNVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +K  +N++I  ++ ALG    + +  E  RY K++I
Sbjct: 351 KARIDKALSNEEIRTIITALGTGIANDFNIEKARYHKIVI 390


>gi|300068747|dbj|BAJ10556.1| DNA gyrase subunit B [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius]
          Length = 389

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 138/399 (34%), Positives = 214/399 (53%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS+ + V V R   I+ Q++ RG PL  L+      +K G
Sbjct: 1   GKGYKVSGGLHGVGASVVNALSEWMRVEVHRDGRIYVQEYERGTPLYDLKVIG-TTDKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+++F+PDP+IF +   F A  L+   +  A+L+  ++  +  ++E        ++  F 
Sbjct: 60  TKVSFKPDPEIFTETTVFSAETLMNRLRELAFLNAGLEIVFEDERE------GGKRAVFK 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+  +++   +++ ++  +       K       VE A+ + +       S+ N I 
Sbjct: 114 YEGGVAEFVRWLNQSKDVLFDDPIYVSAVKDDV---AVEIALQYNDGYAATVYSFANNIN 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G + ALTR I  YA      +    S+  DD+      ++SV + EP+F G
Sbjct: 171 TAEGGTHEAGFKSALTRVINDYARRYGFLKSNDNSMTGDDVREGLTAVVSVKVPEPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + + +  VE    +    +L +NP  A K++E  I  +  R   R+ RE+ R 
Sbjct: 231 QTKTKLGNSEVRGIVETLFAERMQMFLEENPSIARKIVEKCILAARAREAARRARELTRS 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKL DC       +ELF+VEGDSAGGSAK  R+   QA+LPLRGKI+NV  
Sbjct: 291 KKMDVTSLPGKLTDCGSKDPERSELFLVEGDSAGGSAKMGRDPQTQAILPLRGKIINVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +K+  N++I  ++ A G      +     RY K++I
Sbjct: 351 ARLDKVLANEEIRAIITACGTGIGDDFDISKARYHKIVI 389


>gi|6318243|emb|CAB60271.1| DNA gyrase B subunit [Photobacterium damselae subsp. damselae]
          Length = 324

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 125/296 (42%), Positives = 181/296 (61%), Gaps = 4/296 (1%)

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
            + N I   +GGTH +G R ALTR +  Y E      K   +   DD       ++SV +
Sbjct: 1   CFTNNIPQRDGGTHLAGFRGALTRTLNNYMEKEGYSKKAKAATSGDDAREGLTAVISVKV 60

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            +P+F+ QTK KLVS + +  VE+ + +    +L++NP +A  +   +I+ S  R   RK
Sbjct: 61  PDPKFSSQTKDKLVSSEVKSAVESTMGEKLGEFLLENPGDAKTVCTKIIDASRAREAARK 120

Query: 435 QR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            R    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+
Sbjct: 121 AREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLK 180

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIA 552
           GKILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDADVDG+HI 
Sbjct: 181 GKILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIR 240

Query: 553 SLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +LLLTFFY++M +LIE+ H+++  PPL+++ +G +  Y  D+E  Q+         
Sbjct: 241 TLLLTFFYRQMPELIERGHIYIAQPPLYKVKKGKQEQYIKDDEDMQQFQTSLALEN 296


>gi|29652895|gb|AAO87417.1| DNA gyrase B [Listeria monocytogenes]
          Length = 198

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 87/199 (43%), Positives = 120/199 (60%), Gaps = 2/199 (1%)

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +R +    + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+L
Sbjct: 2   AKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAIL 61

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           P+RGKILNV  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAH
Sbjct: 62  PIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAH 121

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           I +LLLT FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  
Sbjct: 122 IRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQVEYVYSDGQLEDYLASL--DGDT 179

Query: 611 KIEISRFKGLGEMLASQLK 629
           K  I R+KGLGEM   QL 
Sbjct: 180 KYSIQRYKGLGEMNPEQLW 198


>gi|35210347|dbj|BAC92685.1| gyrase B subunit [Bacillus tusciae]
          Length = 388

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 151/400 (37%), Positives = 228/400 (57%), Gaps = 16/400 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG+SVVNALS+ L V V R+ + + Q++SRG+P++PLE+     ++ G
Sbjct: 1   GKGYKVSGGLHGVGVSVVNALSEWLEVEVWREGSAYRQRYSRGVPVTPLERLGPT-DRTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T++TF+PDP+IF D   F    L    +  A+L+  +       ++         ++EF 
Sbjct: 60  TQVTFKPDPEIFEDVV-FQYDILQGRLRELAFLNAGITIILEDARD-------GRRQEFA 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG++++++    ++ ++         EK       VE A+ + +   P + S+ N I 
Sbjct: 112 YQGGIRSFVEYLNRSKEVLHQPPVYIAAEKDDVM---VEVALQYNDGYVPSLYSFANNIH 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHESG + ALTR I  YA      +    ++  +D+      I+SV I +P+F G
Sbjct: 169 THEGGTHESGFKSALTRVINDYARKNNLLKDSDSNVTGEDVREGLTAIISVKIPDPQFEG 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + + +  VE+A  + F  +L +NP  A K+++  I  +  R   RK RE   R
Sbjct: 229 QTKTKLGNSEVRGIVESAFGERFVVFLEENPAVARKIVDKCITAARAREAARKARELTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKL DCS   A  +EL++VEGDSAGGSAK  R+R  QA+LPLRGKILNV 
Sbjct: 289 KNALEVSSLPGKLWDCSSKDASESELYLVEGDSAGGSAKSGRDRHFQAILPLRGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +KI +N +I  ++ A+G      +     RY KV+I
Sbjct: 349 KARMDKILSNNEIRAIITAIGTGIEPDFDISRARYHKVVI 388


>gi|328349707|emb|CBY89220.1| GyrB protein [Flavobacterium sp. R-36233]
          Length = 401

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 155/397 (39%), Positives = 224/397 (56%), Gaps = 10/397 (2%)

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA-RQNTIFSQKFSRGIPLS 191
            +T + AGGKFD  +Y++SGGLHGVG+SVVNALS  L  TV      ++ Q++ RG  L 
Sbjct: 2   CMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSKHLRATVHSSDGKVYEQEYERGKALY 61

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
           P+++  +    RGT +TF PDP IF     F    L    +  ++L+  +   ++  +E 
Sbjct: 62  PVKQIGETTK-RGTIVTFYPDPIIFTQTVEFAYDTLSARMRELSFLNKGITITFTDKRE- 119

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
            +K G    E F+   GLK Y++    NR  I S + +  +EK       VE A+ +   
Sbjct: 120 VDKDGNFVSEIFHSDEGLKEYVRYLDANREPIISHVISMNSEK---GEVPVEVALIYNTS 176

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVG 368
               I +Y N I T EGGTH  G R  LTR +KKYA+ +    K    I  DD       
Sbjct: 177 YTENIFAYVNNINTHEGGTHLQGFRTGLTRALKKYADSSGMLDKLKFEIAGDDFREGLTA 236

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           I+SV + EP+F GQTKTKL + +    V  A+ +  ++YL +NP +A  +++ VI  ++ 
Sbjct: 237 IISVKVSEPQFEGQTKTKLGNREVVAPVSQAVSEMIENYLEENPNDARIIVQKVILAAQA 296

Query: 429 RLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
           R   +K RE+  RKT +    LPGKL+DCS+      E+++VEGDSAGG+AKQ R+R+ Q
Sbjct: 297 RHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPTKCEVYLVEGDSAGGTAKQGRDRAFQ 356

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           A+LPLRGKILNV  A   K+  N++I ++  ALG   
Sbjct: 357 AILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTI 393


>gi|88824749|gb|ABD52420.1| gyrase B [Escherichia coli]
          Length = 392

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 147/403 (36%), Positives = 227/403 (56%), Gaps = 16/403 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL    +     G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F+
Sbjct: 60  TMMRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    R
Sbjct: 230 QTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMT 392


>gi|4996808|dbj|BAA78449.1| subunit B protein of DNA gyrase [bacterium rM11]
          Length = 304

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 104/310 (33%), Positives = 156/310 (50%), Gaps = 31/310 (10%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPN 126
           D   LHHL  EV+DN++DE +AGY + I V++  +G L+V+DNGRGIP          P 
Sbjct: 3   DGTGLHHLVFEVVDNSIDEALAGYCDDILVTIHADGSLSVIDNGRGIPTGVKMDDKHEPK 62

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV+R    +   FSR
Sbjct: 63  RSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSVWLKLTVSRDGQRYEIDFSR 122

Query: 187 GIP------------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           G              +SP+    +  +KRGT++ F PD +IF +   F    L K  +  
Sbjct: 123 GHVQNRLIEVVDGAEVSPMRVVGE-SDKRGTKVHFLPDQEIFKENFDFRYEILAKRLREL 181

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V+     +++  E         F   GG+K +++     + ++    F     +
Sbjct: 182 SFLNNGVRIRLKDERDGKEDD-------FSGAGGVKGFVEFINGTKKVLHPTAFHAMGSR 234

Query: 295 KGT-------HRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYA 346
                         VE ++ W +   E    + N I   +GGTH +GLR A+TR I KY 
Sbjct: 235 PAETYGGIPGTEIGVEISMQWNDSYGEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYI 294

Query: 347 ELTQNKRAIS 356
           E     +   
Sbjct: 295 EQNDLAKKAK 304


>gi|300068750|dbj|BAJ10557.1| DNA gyrase subunit B [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius]
          Length = 389

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 138/399 (34%), Positives = 214/399 (53%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS  + V V R   I+ Q++ RG PL  L+      +K G
Sbjct: 1   GKGYKVSGGLHGVGASVVNALSTWMRVEVHRDGHIYVQEYERGTPLYDLKIIG-TTDKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+++F+PDP+IF +   F A  L+   +  A+L+  ++  +  ++E        ++  F 
Sbjct: 60  TKVSFKPDPEIFTETTVFSAETLMNRLRELAFLNAGLEIVFEDERE------GGKRAVFK 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+  +++   +++ ++  +       K       VE A+ + +       S+ N I 
Sbjct: 114 YDGGVAEFVRWLNQSKDVLFEDPIYVSAVKDDV---AVEIALQYNDGYAATVYSFANNIN 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G + ALTR I  YA      +    S+  DD+      ++SV + EP+F G
Sbjct: 171 TAEGGTHEAGFKSALTRVINDYARRYGFLKSNDNSMTGDDVREGLTAVVSVKVPEPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + + +  VE    +    +L +NP  A K+++  I  +  R   R+ RE+ R 
Sbjct: 231 QTKTKLGNSEVRGIVETLFAERMQTFLEENPSVARKIVDKCILAARAREAARRARELTRS 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKL DCS      +ELF+VEGDSAGGSAK  R+   QA+LPLRGKI+NV  
Sbjct: 291 KKMDVTSLPGKLTDCSSKDPERSELFLVEGDSAGGSAKMGRDPQTQAILPLRGKIINVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +K+  N++I  ++ A G      +     RY K++I
Sbjct: 351 ARLDKVLANEEIRAIITACGTGIGDDFDISKARYHKIVI 389


>gi|35210329|dbj|BAC92676.1| gyrase B subunit [Alicyclobacillus acidocaldarius subsp.
           rittmannii]
          Length = 389

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 140/399 (35%), Positives = 216/399 (54%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS+ + V V R  +I+ Q++ RG PL  L+      +K G
Sbjct: 1   GKGYKVSGGLHGVGASVVNALSEWMRVEVHRDGSIYVQEYERGTPLYDLKVIG-TTDKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+++F+PDP+IF +   F A  L+   +  A+L+  ++  +  ++E        ++  F 
Sbjct: 60  TKVSFKPDPEIFTETTVFSAETLMNRLRELAFLNAGLEIVFEDERE------GGKRAVFK 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+  +++   +++ ++  +       K       VE A+ + +       S+ N I 
Sbjct: 114 YDGGVAEFVRWLNQSKDVLFEDPIYVSAVKDDV---AVEIALQYNDGYAATVYSFANNIN 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G + ALTR I  YA      +    S+  DD+      ++SV + EP+F G
Sbjct: 171 TAEGGTHEAGFKSALTRVINDYARRYGFLKSNDNSMTGDDVREGLTAVVSVKVPEPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + + +  VE    +    +L +NP  A K++E  I  S  R   R+ RE+ R 
Sbjct: 231 QTKTKLGNSEVRGIVETLFAERMQMFLEENPSIARKIVEKCILASRAREAARRARELTRS 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKL DCS      +ELF+VEGDSAGGSAK  R+   QA+LPLRGKI+NV  
Sbjct: 291 KKMDVTSLPGKLTDCSSKDPERSELFLVEGDSAGGSAKMGRDPQTQAILPLRGKIINVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +K+  N++I  ++ A G      +     RY K++I
Sbjct: 351 ARLDKVLANEEIRAIITACGTGIGDDFDISKARYHKIVI 389


>gi|4996806|dbj|BAA78448.1| subunit B protein of DNA gyrase [bacterium rM10]
          Length = 299

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 100/306 (32%), Positives = 153/306 (50%), Gaps = 29/306 (9%)

Query: 73  ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKST 129
            LHHL  EV+DN++DE +AGY + I V++  +G L+V+DNGRGIP          P +S 
Sbjct: 1   GLHHLVFEVVDNSIDEALAGYCDDILVTIHADGSLSVIDNGRGIPTGVKMDDKHEPKRSA 60

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV R+       FSRG  
Sbjct: 61  AEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSSWLKLTVRREGRTHEIDFSRGHV 120

Query: 190 LSP-----------LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLS 238
            +              +     +KRGT++ F PD +IF +   F    L K  +  ++L+
Sbjct: 121 QNRLIEVVDGFEVSPMRIIGQTDKRGTKVHFLPDTEIFKENHEFRYEILAKRLRELSFLN 180

Query: 239 GRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT- 297
             V+     +++  E         F   GG+K +++     + ++    F     +    
Sbjct: 181 NGVRIRLKDERDGREDD-------FSGAGGVKGFVEFINGTKKVLHPTTFHAVGSRPAES 233

Query: 298 ------HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
                     VE ++ W +    ++  + N I   +GGTH +GLR A+TR I KY E  +
Sbjct: 234 YGGIPGTEIGVEVSMQWNDSYAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIEQNE 293

Query: 351 NKRAIS 356
             +   
Sbjct: 294 LAKKAK 299


>gi|164690661|dbj|BAF98614.1| gyrase B [Sporolactobacillus inulinus]
          Length = 389

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 148/400 (37%), Positives = 221/400 (55%), Gaps = 15/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS ++ V V R   ++ Q++ RG PL+ L+       + G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTKMWVKVYRNGHVYYQEYHRGKPLADLKIIGD-SEQTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F PDP+IF D   FD   L    +  A+L+  ++      +E        +++ ++
Sbjct: 60  TTTHFEPDPEIFKDTTTFDYDTLRVRVRELAFLNKNIRISIEDRRE------EGKRDTYH 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTIL 323
           + GG+++Y++    ++ +I   I   + EK G     VE A+ +          + N I 
Sbjct: 114 YEGGIRSYVEFLNRSKEVIHEPIDL-EGEKDGI---KVEIAMQYNSGFTGQLYSFANNIH 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G +VALTR I  YA   Q  +    ++  DD+      I+S+   +P+F G
Sbjct: 170 THEGGTHEYGFKVALTRVINDYARKNQLIKASDPNLTGDDVREGLTAIVSIKHPDPQFEG 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + + +   +    + F  YL++NP  A  +++  +  S  R   +K RE   R
Sbjct: 230 QTKTKLGNSEVRAITDTLFSEAFSRYLLENPDVARLIVDKGLIASRARTAAKKARELTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+++    LPGKLADCS   A  +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 290 KSSLEVSSLPGKLADCSSKDASISELYIVEGDSAGGSAKQGRDRMFQAILPLRGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  ++I +N +I  ++ ALG     ++  E  RY K+II
Sbjct: 350 KARLDRILSNAEIRAMITALGTGIGDEFNLEKARYHKIII 389


>gi|20387182|dbj|BAB91291.1| gyrase B [Streptomyces mashuensis]
          Length = 399

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 140/401 (34%), Positives = 215/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V +      ++Q +  G+P +PL+K E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEIKTDGHRWTQDYKLGVPTAPLQKNEAT-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  +    + ++ +  ++ G P    +
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLTLSLTDERPDHVDEEGKPLSVRY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           ++ GG+  +++     +  +          +      ++E A+ W  +    + S+ N I
Sbjct: 119 HYEGGISDFVRYLNSRKGDLVHPTVIAFDAEDKERSLSLEIAMQWNTQYTEGVYSFANII 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I KYA   +   ++  ++  DD+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISVKLSEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+ A+ +    +L +NP EA  ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKAVYEELTDWLDRNPNEAADIIRKAIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKLADC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLETASLPGKLADCQSNDPAKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  NQ+I  L+ A G      +    LRY K+I+
Sbjct: 359 EKARVDKILQNQEIQALISAFGTGVHEDFDIAKLRYHKIIL 399


>gi|68445364|dbj|BAE03183.1| DNA gyrase subunit B [actinobacterium Aac-99]
          Length = 399

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 131/401 (32%), Positives = 214/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG SVVNALS+ L V V     +++Q++ RG+P +PL K  +   + G
Sbjct: 1   GGGYAVSGGLHGVGSSVVNALSNRLTVAVKTDGHLWTQEYIRGVPTAPLLK-GEATEETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T + F  D +IF     ++   L +  Q  A+L+  V      ++ E  ++ G P    F
Sbjct: 60  TTVAFWADDEIFETTT-YNFETLSRRFQEMAFLNRGVSIELIDERPEYKDEEGNPRSVRF 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG+  +++     +  +          +    + + E A+ W  +    + ++ N I
Sbjct: 119 KYDGGIADFVRHINAAKGEMVHPQVIEFGSEDKERKISAEVALQWNNQYSESVYTFANVI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
            T +GGTHE G R A+T  + +YA+  Q   ++  ++  +D+    V I+SV + EP+F 
Sbjct: 179 HTPDGGTHEEGFRSAMTNVVNRYAKDKQLLKEKDDNLSGEDIREGLVAIVSVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTK KL + +A+  V+    +    +  +NP EA  ++   I+ +  R+  RK RE+ R
Sbjct: 239 GQTKAKLGNTEARTFVQKLTYEAMADWFDRNPNEARDIIRKSIQAATARIAARKARELTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +   + LPGKL+DC        E+F+VEGDSAGGSAKQ R+   QA++P+RGKILNV
Sbjct: 299 RKGLLESMALPGKLSDCQSTNPAECEIFVVEGDSAGGSAKQGRDPRVQAIMPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +K+  N ++  L+ ALG      +    LRY K+++
Sbjct: 359 EKARIDKVLQNTEVQGLISALGTGIHDDFDISKLRYHKIVL 399


>gi|83700330|gb|ABC41013.1| DNA gyrase subunit B [Phenylobacterium lituiforme]
          Length = 425

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 160/434 (36%), Positives = 240/434 (55%), Gaps = 20/434 (4%)

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           +I+T LHAG KFD ++Y++SGGLHGVG+SVVNAL D L + + R       +F RG  +S
Sbjct: 1   VIMTVLHAGRKFDQNSYKVSGGLHGVGVSVVNALPDFLKLKIHRGGLTHEMEFRRGDAVS 60

Query: 192 PLEKKEKVRNK------RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
           PL        +       GT +TF P    F     FD   L    +  A+L+  V    
Sbjct: 61  PLAVTGTSPKRDNGEFLTGTEVTFLPSTDTF-RFIEFDLKTLEHRLRELAFLNSGVTIWL 119

Query: 246 SCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
              +        P +E   + GG++ +++   + ++ +  +    + +++      V+ A
Sbjct: 120 KDLR-----GAEPFEEVMSYEGGIEAFVRHLDKAKTPLIKQPIVVRGKRENV---EVDLA 171

Query: 306 IAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDL 362
           + W +   E    + N I   +GGTH +  R ALTR I  YAE +    +  +S+  +D 
Sbjct: 172 LWWNDGYHENVLCFTNNIPQRDGGTHLAAFRSALTRIISGYAESSGAAKREKVSVSGEDA 231

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
                 +LSV + +P+F+ QTK KLVS + +  VE+ + +    +  ++P EA  +++ +
Sbjct: 232 REGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVESLVNEGLGTWFEEHPNEARMIVQKI 291

Query: 423 IERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
            E +  R   RK RE   RK+A+    LPGKLADC +     +E+F+VEGDSAGGSAKQA
Sbjct: 292 AEAAAAREAARKARELTRRKSALDITSLPGKLADCQEKDPAKSEIFLVEGDSAGGSAKQA 351

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
           RNR NQA+LPLRGKILNV  A  +K+ ++ Q+  L+ ALG    R  +  E LRY K++I
Sbjct: 352 RNRENQAILPLRGKILNVERARFDKMLSSDQVGTLITALGAGIGRDDFDIEKLRYHKIVI 411

Query: 541 MTDADVDGAHIASL 554
           MTDADVDG+HI +L
Sbjct: 412 MTDADVDGSHIRTL 425


>gi|56463181|gb|AAV91732.1| gyrase B [Escherichia coli]
 gi|56463183|gb|AAV91733.1| gyrase B [Escherichia coli]
 gi|56463185|gb|AAV91734.1| gyrase B [Escherichia coli]
          Length = 245

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 89/257 (34%), Positives = 141/257 (54%), Gaps = 13/257 (5%)

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
           +AG+   I V++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y+
Sbjct: 1   LAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYK 59

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + F
Sbjct: 60  VSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRF 118

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ GG+
Sbjct: 119 WPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGI 171

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   +GG
Sbjct: 172 KAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGG 228

Query: 329 THESGLRVALTRGIKKY 345
           TH +G R A+TR +  Y
Sbjct: 229 THLAGFRAAMTRTLNAY 245


>gi|42541299|gb|AAS19529.1| DNA gyrase subunit B [Photobacterium profundum SS9]
          Length = 402

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 150/412 (36%), Positives = 234/412 (56%), Gaps = 15/412 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I  Q +  G+P  PLE   +
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIYRHGFIHHQIYRHGVPDKPLETIGE 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GT + F P    F +   F    L K  +  ++L+  V      ++E        
Sbjct: 61  T-DKTGTLLRFWPSEGTFTNVV-FHYEILAKRLRELSFLNSGVSIRLIDERE------EG 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +++ F + GG++ ++     N++ I +++F    E++      VE A+ W +     I  
Sbjct: 113 KQDHFMYEGGIRAFVAHLNRNKTPIHAKVFHFDFERED--GIVVEVAMQWNDGFQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GG+H +G R ALTR +  + +      K   S   DD       ++SV + 
Sbjct: 171 FTNNIPQRDGGSHLAGFRGALTRTLNTFMDKEGYSKKEKTSTCGDDAREGLTAVVSVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLRRRK 434
           +P+F+ QTK KLVS + +  VE+ + +    +L++NP +A  +   +I+ S      R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVESVMGEKLSEFLLENPSDAKIVCGKIIDASRAREAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           KILNV  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDAD
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDAD 402


>gi|33145994|emb|CAD57637.2| DNA gyrase subunit B [Vibrio splendidus]
          Length = 404

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 155/414 (37%), Positives = 230/414 (55%), Gaps = 15/414 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +  G P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GT I F P  + F +   F    L K  +  ++L+  V       +E        
Sbjct: 61  T-DKTGTEIRFWPSEETFNN-IEFHYDILAKRLRELSFLNSGVSIKLIDKRE------ED 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F + GG++ +++    N++ I  +IF    E++     TVE A+ W +     I  
Sbjct: 113 KMDHFEYEGGIQAFVEHLNTNKTPIIQKIFHFDHERED--GITVEVAMQWNDGYQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GG H +G R ALTR +  + +      K   S   DD       I+SV + 
Sbjct: 171 FTNNIPQRDGGAHLAGFRGALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE+ + +    +L++NP EA  +   +I         R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKL DC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLVDCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVD 547
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVD
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVD 404


>gi|56463173|gb|AAV91728.1| gyrase B [Escherichia coli]
 gi|56463175|gb|AAV91729.1| gyrase B [Escherichia coli]
 gi|56463179|gb|AAV91731.1| gyrase B [Escherichia coli]
          Length = 245

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 89/257 (34%), Positives = 141/257 (54%), Gaps = 13/257 (5%)

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
           +AG+   I V++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y+
Sbjct: 1   LAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYK 59

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + F
Sbjct: 60  VSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRF 118

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ GG+
Sbjct: 119 WPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGI 171

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   +GG
Sbjct: 172 KAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGG 228

Query: 329 THESGLRVALTRGIKKY 345
           TH +G R A+TR +  Y
Sbjct: 229 THLAGFRAAMTRTLNAY 245


>gi|42541265|gb|AAS19512.1| DNA gyrase subunit B [Aliivibrio fischeri]
          Length = 403

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 153/413 (37%), Positives = 234/413 (56%), Gaps = 15/413 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I  Q +  G P +PL    K
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIHRAGEIHQQVYHHGEPEAPLAVIGK 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +  GT+I F P  + F +   F    L K  +  ++L+  V       +E        
Sbjct: 61  T-DTTGTKIRFWPSEETFTNVV-FVYEILAKRLRELSFLNSGVSIKLQDMRE------ED 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F + GG++ ++Q    N++ I  ++F   +E++     +VE ++ W +     I  
Sbjct: 113 KADHFMYEGGIQAFVQHLNRNKTPIHQKVFHFDSERED--GISVEVSMQWNDGFQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV + 
Sbjct: 171 FTNNIPQRDGGTHLAGFRSALTRTLNTFMDKEGFSKKAKAATSGDDAREGLTAVVSVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ +    +L +NP EA  +   +I+        R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLAENPSEAKMVCSKIIDAARAREAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDIAGLPGKLADCQEKDPGLSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADV 546
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADV
Sbjct: 351 KILNVEKARFDKMLSSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMTDADV 403


>gi|159146582|gb|ABW90735.1| DNA gyrase beta subunit [Vibrio rotiferianus]
          Length = 401

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 152/411 (36%), Positives = 234/411 (56%), Gaps = 15/411 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             ++ GT+I F P  + F +   F    L K  +  ++L+  V      ++E        
Sbjct: 61  T-DQTGTQIRFWPSAETFSN-TEFHYDILAKRLRELSFLNSGVSIKLVDEREAD------ 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F F GG++ +++    N++ I  +IF    E++     +VE A+ W +     I  
Sbjct: 113 KSDHFMFEGGIQAFVEHLNTNKTPIIEKIFHFDFERED--GISVEVAMQWNDGFQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV + 
Sbjct: 171 FTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ +    +L++NP EA  +   +I+        R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIENPAEAKMVCSKIIDAARAREAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDA
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDA 401


>gi|34850105|emb|CAE46924.1| DNA gyrase subunit B [Vibrio crassostreae]
          Length = 403

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 155/413 (37%), Positives = 233/413 (56%), Gaps = 15/413 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +S G P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLTVIGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GT I F P  + F +   F    L K  +  ++L+  V      ++E        
Sbjct: 61  A-DKTGTEIRFWPSEETFTN-IEFHYDILAKRLRELSFLNSGVSIKLIDERE------ED 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F + GG++ +++    N++ I  +IF   +E++     TVE A+ W +     I  
Sbjct: 113 KMDHFEYEGGIQAFVEHLNTNKTPIIQKIFHFNSERED--GITVEVAMQWNDGYQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GG H +G R ALTR +  + +      K   +   DD       I+SV + 
Sbjct: 171 FTNNIPQRDGGAHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAIVSVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE+ + +    +L++NP EA  +   +I         R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKTVCSKIIDAARARDAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADV 546
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADV
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADV 403


>gi|84310516|gb|ABC55406.1| DNA gyrase subunit B [Bacillus subtilis]
          Length = 390

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 149/399 (37%), Positives = 221/399 (55%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            S Y++SGGLHGV  SVVNALS EL VTV R   I  Q + RG+P++ LE   +  +  G
Sbjct: 1   GSGYKVSGGLHGVRASVVNALSTELDVTVHRDGKIHRQTYKRGVPVTDLEIIGET-DHTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F PDP+IF +   +D   L    +  A+L+  V       +E  E+        ++
Sbjct: 60  TTTHFVPDPEIFSETTEYDYDLLANRVRELAFLTKGVNITIEDKREGQERKNE-----YH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K+Y++    ++ ++  E    + EK G    TVE A+ + +     I S+ N I 
Sbjct: 115 YEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNIN 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G +  LTR I  YA      +    ++  DD+      I+S+   +P+F G
Sbjct: 172 TYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + +A+   +       + ++++NP  A K+++  +  +  R+  +K RE   R
Sbjct: 232 QTKTKLGNSEARTITDTLFSTAMETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 292 KSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
            A  +KI +N ++  ++ ALG      +  E  RY KV+
Sbjct: 352 KARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVV 390


>gi|328349749|emb|CBY89182.1| GyrB protein [Flavobacterium sp. R-38377]
          Length = 411

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 160/416 (38%), Positives = 233/416 (56%), Gaps = 15/416 (3%)

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA-RQNTIFSQKFSRGIPLSPL 193
           T + AGGKFD  +Y++SGGLHGVG+SVVNALS+ L  TV      ++ Q++ +G  L P+
Sbjct: 1   TKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGKVYEQEYEKGKALYPV 60

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           ++  +    RGT +TF PDP IF     +    L    +  ++L+  +   ++  +E  +
Sbjct: 61  KQIGETTK-RGTIVTFYPDPSIFTQTIEYSYDTLSARMRELSFLNKGITITFTDKRE-VD 118

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
           K G    E F+   GLK Y++    NR  I + + +   EK       VE A+ +     
Sbjct: 119 KEGNFVSEIFHSDEGLKEYIRYLDGNREPIIAHVISMDHEK---GEIPVEVALIYNTSYT 175

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGIL 370
             I SY N I T EGGTH  G R  LTR +KKYA+ +    K    I  DD       I+
Sbjct: 176 ENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGMLDKLKFDISGDDFREGLTAII 235

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV ++EP+F GQTKTKL + +    V  A+ +  ++YL +NP +A  +++ VI  ++ R 
Sbjct: 236 SVKVQEPQFEGQTKTKLGNREVVSPVSQAVSEMIENYLEENPNDARIIVQKVILAAQARH 295

Query: 431 RRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             +K RE+  RKT +    LPGKL+DCS+      E+++VEGDSAGG+AKQ R+R+ QA+
Sbjct: 296 AAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGGTAKQGRDRAFQAI 355

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY-----REEDLRYEKVII 540
           LPLRGKILNV  A   K+  N++I ++  ALG    ++          LRY KVII
Sbjct: 356 LPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTVGTEEDSKALNISKLRYHKVII 411


>gi|328349721|emb|CBY89168.1| GyrB protein [Flavobacterium sp. R-38274]
          Length = 402

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 155/399 (38%), Positives = 226/399 (56%), Gaps = 10/399 (2%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA-RQNTIFSQKFSRGIP 189
           E+++T + AGGKFD  +Y++SGGLHGVG+SVVNALS+ L  TV      ++ Q++ +G  
Sbjct: 1   EVVMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGKVYEQEYEKGKA 60

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
           L P+++  +    RGT +TF PD  IF     F    L    +  +YL+  +   ++  +
Sbjct: 61  LYPVKQIGETTK-RGTIVTFYPDNTIFTQTTEFSYDTLSARMRELSYLNKGITITFTDKR 119

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
           E  +K G    E F+   GLK Y++    NR  I + + +  ++K       VE A+ + 
Sbjct: 120 E-KDKDGNFVSEVFHSTEGLKEYIRYLDSNREPIIAHVISMDSDK---GEIPVEVALIYN 175

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISA 366
                 I SY N I T EGGTH  G R  LTR +KKYA+ +    K    +  DD     
Sbjct: 176 TSYTENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADSSGMLDKLKFEVSGDDFREGL 235

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             I+SV + EP+F GQTKTKL + +    V  A+ D  + YL +NP +A  +++ VI  +
Sbjct: 236 TAIISVKVAEPQFEGQTKTKLGNREVVSPVSQAVGDMIESYLEENPNDARIIVQKVILAA 295

Query: 427 EERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
           + R   +K RE+  RKT +    LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+
Sbjct: 296 QARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVFLVEGDSAGGTAKQGRDRA 355

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
            QA+LPLRGKILNV  A   K+  N++I ++  ALG   
Sbjct: 356 FQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTI 394


>gi|20387172|dbj|BAB91286.1| gyrase B [Streptomyces lavenduligriseus]
          Length = 409

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 144/411 (35%), Positives = 217/411 (52%), Gaps = 17/411 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS ++ V V      ++Q +  G+P +PL K E      G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTKVAVEVRTDGHRWTQDYKMGVPTAPLVKHEATEE-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA-----------E 253
           T +TF  DP+IF     +    L +  Q  A+L+  +    + ++E A           +
Sbjct: 60  TSVTFWADPEIFETT-EYSFETLSRRFQEMAFLNKGLTIRLTDERESAKATSGADEAGAD 118

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP 313
           +    +   +++ GG+  +++     +             +      ++E A+ W     
Sbjct: 119 EKAEVKTVTYHYEGGIVDFVKYLNSRKGDAVHPTVVSLEAEDKDKSLSLEVAMQWNSGYS 178

Query: 314 E-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGIL 370
           E + S+ N I T EGGTHE G R ALT  I KYA   +   ++  ++  DD+      I+
Sbjct: 179 EGVYSFANIIHTHEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAII 238

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV + EP+F GQTKTKL + +A+  V+ A+ +  + +L +NP+EA  ++   I+ +  R+
Sbjct: 239 SVKLSEPQFEGQTKTKLGNTEAKTFVQKAVYEHLNDWLDRNPVEAADIVRKGIQAATARV 298

Query: 431 RRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK R++ R+  +     LPGKLADC  N     E+FIVEGDSAGGSAK  RN   QA+
Sbjct: 299 AARKARDLTRRKGLLETASLPGKLADCQSNDPAKCEIFIVEGDSAGGSAKSGRNPQYQAI 358

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           LP+RGKILNV  A  +KI  NQ+I  L+ A G      +  E LRY K+I+
Sbjct: 359 LPIRGKILNVEKARIDKILQNQEIQALISAFGTGVHEDFDIEKLRYHKIIL 409


>gi|29652733|gb|AAO87336.1| DNA gyrase B [Listeria monocytogenes]
          Length = 180

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 84/181 (46%), Positives = 113/181 (62%), Gaps = 2/181 (1%)

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I  N+
Sbjct: 2   KLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANE 61

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ M  L++  +
Sbjct: 62  EIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGY 121

Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
           +++  PPL++I  G +  Y + +   +  L      G  K  I R+KGLGEM   QL +T
Sbjct: 122 IYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYKGLGEMNPEQLWDT 179

Query: 632 A 632
            
Sbjct: 180 T 180


>gi|68165244|gb|AAY87582.1| DNA gyrase subunit B [Vibrio cholerae]
          Length = 357

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 119/365 (32%), Positives = 196/365 (53%), Gaps = 15/365 (4%)

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +  ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+S
Sbjct: 1   IHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 59

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+++ +T+ R   I SQ +  G+P +PL    ++  + GT + F P  + F +  
Sbjct: 60  VVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGEI-ERTGTTVRFWPSAQTFTN-I 117

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L K  +  ++L+  V    + ++E  +K      + F + GG++ ++     N+
Sbjct: 118 EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEGGIQAFVTHLNRNK 171

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + I  ++F    E++     +VE A+ W +     I  + N I   +GGTH +G R ALT
Sbjct: 172 TPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALT 229

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  Y +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE
Sbjct: 230 RTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 289

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
           +A+ +    +L +NP EA  +   +I+        R+ +    RK A+    LPGKLADC
Sbjct: 290 SAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADC 349

Query: 457 SQNIA 461
            +   
Sbjct: 350 QEKDP 354


>gi|19909637|dbj|BAB87014.1| DNA gyrase subunit B [Rubrobacter radiotolerans]
          Length = 381

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 139/389 (35%), Positives = 212/389 (54%), Gaps = 15/389 (3%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK--RG 204
            Y++SGGLHGVG SVVNALS+ L + + R   +++Q++ RG P   LE+  K++     G
Sbjct: 1   AYKVSGGLHGVGASVVNALSEWLEIEIKRDGYVWTQRYERGFPKGELERGRKMKKDEGTG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I +RPD +IF +        L +  +  A+L+  ++     ++E         +  + 
Sbjct: 61  TTIRWRPDGEIFKEGLDLSYDTLSRRFRESAFLNRGLRIKLVDERE------EGREVTYQ 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTI 322
           + GG+K ++    E+++ I   +F    E++    G VE A+ W +        ++ N I
Sbjct: 115 YDGGIKDFVAHINESKNPIHKSVFFLHAEEEA---GDVEVALQWNDGFHRDSVFTFANNI 171

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH SG R ALTR +  YA       ++   +I DD+      ++SV + EP+F 
Sbjct: 172 NTHEGGTHLSGFRSALTRTVNDYARQKGFLKEKDEPMIGDDIREGLAAVISVKVSEPQFE 231

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + + +  VE         +  +NP EA  ++  V++ +  R   RK R+  R
Sbjct: 232 GQTKTKLGNTEIRGLVETNTNRYLAEFFEENPAEAKIIINKVLQAARVRQAARKVRDTMR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K  +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R+ QA+LPLRGKILNV 
Sbjct: 292 KGYLESSTLPGKLADCSSKDPARSELYIVEGDSAGGSAKQGRDRNFQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
            A   K+ +N +I  ++ A+G     Q+ 
Sbjct: 352 KANINKVLSNVEIQAMISAVGASVGDQFN 380


>gi|74188146|dbj|BAE37168.1| unnamed protein product [Mus musculus]
          Length = 511

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 102/521 (19%), Positives = 184/521 (35%), Gaps = 58/521 (11%)

Query: 19  SSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE------- 71
           ++ K ++      + +    S    Y          LE + +RP  YIG  +        
Sbjct: 18  NATKKEELETANKNDSTKKLSVERVYQKK-----TQLEHILLRPDTYIGSVEPLTQLMWV 72

Query: 72  ---------------KALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN-GFLTVVDNGR 114
                            L+ +F E++ NA D          I+VS+D     +++ +NG+
Sbjct: 73  YDEDVGMNCREVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGK 132

Query: 115 GIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA 174
           GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V  A
Sbjct: 133 GIPVVEH-KVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETA 191

Query: 175 RQNTIFSQK--FSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKM 230
            +    S K  +   +  +   K +    +  T ITF+PD              A + + 
Sbjct: 192 CKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKDIVALMTRR 251

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
               A     VK  ++  K                  G ++Y+   ++++   +      
Sbjct: 252 AYDLAGSCKGVKVMFNGKKLPV--------------NGFRSYVDLYVKDKLDETGVALKV 297

Query: 291 KTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
             E         +  +   E+  +  S+ N+I T +GG H   +   +   + +     +
Sbjct: 298 IHEL---ANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVSKLIE-VVKKK 353

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
           NK  +S+    +       ++  I  P F  QTK  +         +  L + F      
Sbjct: 354 NKAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKCQLSEKFFK-AAS 412

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           N      +L WV  +++   +  K+    + + I+ +       D     +    L + E
Sbjct: 413 NCGIVESILNWVKFKAQ--TQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLILTE 470

Query: 471 GDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIR 508
           GDSA   A        R    V PLRGKILNV  A  ++I 
Sbjct: 471 GDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIM 511


>gi|22091038|dbj|BAC06810.1| gyrase B [Klebsiella pneumoniae]
 gi|22091040|dbj|BAC06811.1| gyrase B [Klebsiella pneumoniae]
          Length = 390

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 146/401 (36%), Positives = 227/401 (56%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L + + R N +  Q +  G+P +PL    +  +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQRDNKVHKQMYEHGVPQAPLAVTGET-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F+
Sbjct: 60  TMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    R
Sbjct: 230 QTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|20387170|dbj|BAB91285.1| gyrase B [Streptomyces mobaraensis]
 gi|308152579|dbj|BAJ22268.1| DNA gyrase subunit B [Streptomyces mobaraensis]
          Length = 399

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 141/401 (35%), Positives = 218/401 (54%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL+K E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSSRVAVEVKTDGFRWTQDYKLGVPTAPLQKNEAT-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  +    + ++ +  ++ G P    +
Sbjct: 60  TSVTFWADGDIFETT-DYSFETLSRRFQEMAFLNKGLTIALTDERPDHVDEEGKPLTVRY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           ++ GG+  +++     +  +          +    + ++E A+ W  +    + S+ N I
Sbjct: 119 HYEGGISDFVRYLNSRKGELIHPTVISLEAEDKERQLSLEIAMQWNSQYTEGVYSFANII 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I KYA   +   ++  ++  DD+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISVKLSEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+ A+ +    +L +NPIEA  ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKAVYEHLTDWLDRNPIEAADIIRKSIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLETASLPGKLSDCQSNDPAKCEIFIVEGDSAGGSAKSGRNPEYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  NQ+I  L+ A G      +  + LRY K+I+
Sbjct: 359 EKARIDKILQNQEIQALISAFGTGVHEDFDIDKLRYHKIIL 399


>gi|198042666|gb|ACH81158.1| GyrB [Alteromonas sp. UST010723-013]
          Length = 399

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 148/409 (36%), Positives = 226/409 (55%), Gaps = 16/409 (3%)

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFD+++Y++SGGLHGVG+SVVNALS  L + + R      Q++  G+P +PL 
Sbjct: 1   TVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSSRLKLRIRRGGKAHEQEYHHGVPQAPLA 60

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
                 +K GT I F P    F D   +    L K  +  ++L+  V      +++  E 
Sbjct: 61  VTGDT-DKTGTMIRFWPSSDTFTDTL-YHYDILAKRLRELSFLNSGVSIRLKDERDGKE- 117

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313
                 + F + GG+K +++   E ++ +  ++F   +E++      VE A+ W +    
Sbjct: 118 ------DHFMYEGGIKAFVEYLNEKKTPVHQKVFHFCSEQED--GIAVEVAMQWNDSFQE 169

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILS 371
            +  + N I   +GGTH +G R ALTR +  Y E      K   +   DD       ++S
Sbjct: 170 NVFCFTNNIPQRDGGTHLAGFRGALTRTLNNYMEKEGLNKKAKTNASGDDAREGLTAVIS 229

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERL 430
           V + +P+F+ QTK KLVS + +  VE+A+ +    +L++NP E+  +   +I+       
Sbjct: 230 VKVPDPKFSSQTKDKLVSSEVRPAVESAMNEKLAEFLLENPAESKIIAGKIIDAARAREA 289

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+L
Sbjct: 290 ARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAIL 349

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
           PL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  E LRY  +
Sbjct: 350 PLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYDPEKLRYHSI 398


>gi|88824755|gb|ABD52423.1| gyrase B [Escherichia coli]
          Length = 392

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 147/403 (36%), Positives = 227/403 (56%), Gaps = 16/403 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +S+Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL    +     G
Sbjct: 1   DSSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F+
Sbjct: 60  TMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           Q+K KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    R
Sbjct: 230 QSKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMT 392


>gi|308153056|dbj|BAJ22117.1| DNA gyrase subunit B [Bacillus alcalophilus]
          Length = 384

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 144/394 (36%), Positives = 217/394 (55%), Gaps = 14/394 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS  L V + R   ++ QK+ +G+P + L    K  N  G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTMLEVEIERDGNLYHQKYHQGVPAADLAIIGKSEN-SG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+  F+PDP+IF +   +D   L    +  A+L+  +    +  +E        +  ++Y
Sbjct: 60  TKTHFKPDPEIFQETIVYDYDTLALRLRELAFLNKGLTITITDKRED------GKSAKYY 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+ ++++     + ++  E    + EK G     VE A+ + +     + S+ N I 
Sbjct: 114 YEGGIASFVKHLNRTKEVLHDEPIHIEGEKDG---LNVEVAVQYNDGYVGNLYSFANNIS 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHESG + ALTR I  YA       +   ++  DD+      I+SV I +P+F G
Sbjct: 171 THEGGTHESGFKTALTRVINDYARKNSLVKENDPNLTGDDVREGLTAIISVKIPDPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + +A+   ++   + F  +L++NP  A K++E  +  S  R   +K RE   R
Sbjct: 231 QTKTKLGNSEARTITDSLFSEHFSRFLIENPQVARKIVEKGLMASRAREAAKKARELTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADC+   A  +E++IVEGDSAGGSAKQ R+R  QA+LPLRGKI+NV 
Sbjct: 291 KSALEVSALPGKLADCASKDASISEIYIVEGDSAGGSAKQGRDRHFQAILPLRGKIINVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
            A  +KI  N +I  ++ A G      +  E  R
Sbjct: 351 KARLDKILANNEIRAMITAFGTGVGGDFDIEKAR 384


>gi|110612651|gb|ABG78288.1| GyrB [uncultured bacterium]
          Length = 397

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 151/409 (36%), Positives = 236/409 (57%), Gaps = 17/409 (4%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD+++Y++SGGLHGVG+SVVNALS+ELH+ + R   ++ Q +  G+P +PL    +  N 
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSEELHLLIKRHGKVYEQHYHHGVPDAPLAVTGEA-NA 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT++ F+P  + F +   F    L K  +  ++L+  V      ++         +++ 
Sbjct: 60  TGTQVWFKPSAQTFTNI-EFHYDILAKRLRELSFLNSGVGILLFDER-------TNKQDT 111

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           F + GG+K +++    N++ I   +F+   EK      +VE A+ W +     I  + N 
Sbjct: 112 FRYEGGIKAFVEHLNRNKTPIIPSVFSMSGEKDNI---SVELALQWNDSYQENIFCFTNN 168

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +GLR ALTR +  Y E      K  ++   DD       +LSV + +P+F
Sbjct: 169 IPQRDGGTHLAGLRSALTRTLNNYIENEGHAKKAKVTTTGDDARGGLTAVLSVKVPDPKF 228

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REV 438
           + QTK KLVS + +  VE+ + +  + YL++NP  A  ++  +IE +  R   R+     
Sbjct: 229 SSQTKDKLVSSEVKSVVESLVAEKLNDYLLENPTVAKTIVGKIIEAARAREAARRARDMT 288

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK+A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ R+R  QA+LPL+GKILN
Sbjct: 289 RRKSALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRDRKFQAILPLKGKILN 348

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADV 546
           V  A  +K+ ++Q++  L+ ALGC     +Y  + +RY ++IIMTDADV
Sbjct: 349 VEKARFDKMLSSQEVATLITALGCGIGSDEYDPDKIRYHRIIIMTDADV 397


>gi|148470186|gb|ABQ66041.1| gyrase b [uncultured bacterium]
          Length = 433

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 162/443 (36%), Positives = 225/443 (50%), Gaps = 32/443 (7%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGK D   Y+I+GGLHGVG+ VVNALS  L   V R   I+ +KF +G+P 
Sbjct: 1   EVIMTVLHAGGKLDKKVYKITGGLHGVGVHVVNALSRLLIAVVKRPEGIYYEKFEKGVPS 60

Query: 191 SPLE-----KKEKVRNK------------RGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
             L+                          G  I F PDP    +   F    + +  + 
Sbjct: 61  GGLQFVEKGSWGNTGEPEIDSIEPKLAQDHGLIIKFYPDPD--FEDLNFSYQVIHERIKE 118

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            A+L+ +V      ++  A        E  +F  GL  ++    E    I  E      E
Sbjct: 119 LAFLNPQVAISIKDERINA-------SEVMHFEXGLSQFVDYLGEGHQSILKEPIYNLEE 171

Query: 294 KKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK 352
            + T    VE+A  +    +  + SY N I T EGGTH +G R  L+R ++ YA+     
Sbjct: 172 TEDT---VVEFAFLYNNSTSEIMQSYVNNISTVEGGTHVTGFRAGLSRAVQDYAKNHDLV 228

Query: 353 RAISII-SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           + +  I SDD+    V +L V +  P+F GQTK+KL +   +  V+++    F  Y    
Sbjct: 229 KGVESIVSDDVREGLVAVLHVKVIAPQFEGQTKSKLGNSTVRGIVQSSTEKYFKSYFESF 288

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P  A  ++  VI  +  R   R  +E V RK+A+    LPGKLADCS +     EL+IVE
Sbjct: 289 PNIAQNIVRRVIMAAAAREASRNAKELVRRKSALESGNLPGKLADCSSSDPAKAELYIVE 348

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530
           G+SAGGSAKQAR R  QA+LPLRGKILNV  A   K   N++I +L+  +G   +     
Sbjct: 349 GESAGGSAKQARTRDYQAILPLRGKILNVEKAADIKTLANEEIRNLITVMGTNIKDSLDL 408

Query: 531 EDLRYEKVIIMTDADVDGAHIAS 553
             LRY K+IIMTDADVDG+HI +
Sbjct: 409 SKLRYGKIIIMTDADVDGSHIRT 431


>gi|82568129|dbj|BAE48499.1| DNA gyrase B [Thermoactinomyces vulgaris]
          Length = 391

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 154/400 (38%), Positives = 221/400 (55%), Gaps = 13/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y+ SGGLHGVG+SVVNALS  L V V R   I+ Q++ RG+P + LE   +     G
Sbjct: 1   GDGYKFSGGLHGVGVSVVNALSIWLSVEVKRDGKIYHQRYQRGVPDADLEVIGETEE-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+ITF+PDP+IF +   FD   L    +  A+L+G VK      +   EK        F 
Sbjct: 60  TKITFKPDPEIFTETTEFDFNILQNRLRELAFLNGGVKIILKDLRGEEEKE-----VVFQ 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           F GG++++++    NR +++      + E+       +E A+ + +     I SY N I 
Sbjct: 115 FEGGIRSFVEHLDRNREVLNQPPVYIQGERDSIL---IEIALQYNDSFTSNIYSYANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G + ALTR I  YA      +    ++  DD+      I+SV I +P+F G
Sbjct: 172 THEGGTHEAGFKSALTRVINDYARRNNLLKDNDSNLTGDDVREGLTAIISVKIMDPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNR 440
           QTKTKL + +A+   E    D F  YL ++P EA K++   V+     +  R+ +    R
Sbjct: 232 QTKTKLGNSEARSATEQLFADHFQTYLDEHPAEAKKIINKAVMASRARQAARKARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC+   A  +ELFIVEGDSAGG+AKQ R+R  QA+LPL+GKI+NV 
Sbjct: 292 KNALEVSALPGKLADCTSRSAQDSELFIVEGDSAGGTAKQGRDRMFQAILPLKGKIINVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  ++  +N +I  ++ ALG      +  E  RY K+II
Sbjct: 352 KARLDRALSNDEIRTIITALGTGIGDDFNIEKARYHKIII 391


>gi|110264809|gb|ABG56980.1| DNA gyrase beta subunit [Vibrio harveyi]
 gi|159895000|gb|ABX09846.1| DNA gyrase beta subunit [Vibrio harveyi]
          Length = 400

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 151/410 (36%), Positives = 233/410 (56%), Gaps = 15/410 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             ++ GT+I F P  + F +   F    L K  +  ++L+  V      ++E        
Sbjct: 61  T-DQTGTQIRFWPSAETFSN-TEFHYDILAKRLRELSFLNSGVSIKLVDEREAD------ 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F F GG++ +++    N++ I  +IF    E++     +VE A+ W +     I  
Sbjct: 113 KSDHFMFEGGIQAFVEHLNTNKTPIIEKIFHFDFERED--GISVEVAMQWNDGFQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV + 
Sbjct: 171 FTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ +    +L++NP EA  +   +I+        R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIENPAEAKMVCSKIIDAARAREAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTD 543
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTD
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTD 400


>gi|284504201|ref|YP_003406916.1| DNA topoisomerase II [Marseillevirus]
 gi|282935639|gb|ADB03954.1| DNA topoisomerase II [Marseillevirus]
          Length = 1089

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 127/636 (19%), Positives = 224/636 (35%), Gaps = 69/636 (10%)

Query: 64  MYIGGTD-EKALHHLFSEVIDNAMDEVIAG-----YANLIEVSLD-GNGFLTVVDNGRGI 116
           M  G  +  + L  +F E++ NA+D              ++VSLD   G+ TV ++G  I
Sbjct: 41  MLFGTLEFPEGLERIFYEIVSNAVDNFFRSSVSGIPMKSVKVSLDRETGYCTVWNDGAHI 100

Query: 117 PVEN----------HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALS 166
            VE           +         E+      A   +++     + G +G+G  + +  S
Sbjct: 101 SVEKKEYSYTDELGNTSSSLLYPAELFFGYSKASTNYNDDEVRKTSGRNGLGAKLTSIFS 160

Query: 167 DELHVTVARQNT--IFSQKFSRGIPLSPLEKKEKVRNKRG-TRITFRPDPKIFGDKAGFD 223
               V         IF Q+F   +        EK   K+G T + F PD   FG      
Sbjct: 161 KHFVVRCFDPEKQRIFQQEFFDNLTRRTPPVIEKCTKKKGWTEVRFLPDFARFGLDGW-- 218

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              LL   Q     +  V    +   E    +    +    F G    +L          
Sbjct: 219 TEPLLSRFQKTLRDASLVTGLSASFNEEKFSFQTLPEYVALFSGSNPNFLCL-------S 271

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR-GI 342
           S +      EK      T               S+ N +     G H +  + A+    +
Sbjct: 272 SPDSRFALLEKNPELVPT-------EPSQETSLSFVNGLE-VFTGVHVNAWKNAVLMPLL 323

Query: 343 KKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRD 402
           K +    + +         L       +   + +PEF  QTK +L S   + T  +    
Sbjct: 324 KAFNAKQKAEGKPKASMKQLECFFHLFVVCDLDKPEFTSQTKHELASPTPKTTKVSPE-- 381

Query: 403 PFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAH 462
                          +    ++    RL  +K ++  +           +LA  S++   
Sbjct: 382 ----------QIKKLMKWGFVQELSSRLDPKKTKKTKKLVLDLTKVDDAQLAGTSRSAEC 431

Query: 463 GTELFIVEGDSAG----GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
              L + EGDSA           ++R       L+GK+LN  +A  + I  N+++  L  
Sbjct: 432 I--LILTEGDSAKTLAVSGFTSLKDRERYGAFALKGKVLNTTNATQKTIGKNKELELLKN 489

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
            LG         + LRY KV++M DAD DG HI  L+L F ++   +L+E+  +  +  P
Sbjct: 490 VLGLSKDLG---KTLRYGKVLLMCDADEDGKHIEGLVLNFLHKHYPELLEKGFVQSLRTP 546

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           + +   G +  +       ++ L   K  G   +++  FKGLG       ++     +++
Sbjct: 547 ILKAFLGKREEWFFSTTKFEEWLS--KNPGHKNLKVQYFKGLGSSRPEDGRKY---LSEQ 601

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
            L  V    D         + +K    K++ER  ++
Sbjct: 602 KL--VSYVADGTEGAWFDLAFSK---NKSNERKTWL 632


>gi|20387168|dbj|BAB91284.1| gyrase B [Streptomyces kishiwadensis]
          Length = 399

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 139/401 (34%), Positives = 215/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V +      ++Q +  G+P +PL++ E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEIKTDGHRWTQDYKLGVPTAPLQQNEAT-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  +    + ++ +  ++ G P    +
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLTLSLTDERPDHVDEEGKPLSVRY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           ++ GG+  +++     +  +          +      ++E A+ W  +    + S+ N I
Sbjct: 119 HYEGGISDFVRYLNSRKGDLVHPTVIAFDAEDKERSLSLEIAMQWNTQYTEGVYSFANII 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I KYA   +   ++  ++  DD+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISVKLSEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+ A+ +    +L +NP EA  ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKAVYEELTDWLDRNPNEAADIIRKAIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKLADC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLETASLPGKLADCQSNDPAKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  NQ+I  L+ A G      +    LRY K+I+
Sbjct: 359 EKARVDKILQNQEIQALISAFGTGVHEDFDIAKLRYHKIIL 399


>gi|61676002|gb|AAX51666.1| gyrase subunit B [Waddlia chondrophila WSU 86-1044]
          Length = 219

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 87/226 (38%), Positives = 127/226 (56%), Gaps = 12/226 (5%)

Query: 62  PGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENH 121
           PGMYIG T    LH L  EV+DN++DE +AG+ + I V ++ +G +T+ DNGRGIP++ H
Sbjct: 1   PGMYIGDTSTSGLHQLVYEVVDNSIDEAMAGHCSEIYVIINADGSITLEDNGRGIPIQKH 60

Query: 122 PKFPNK-----STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQ 176
            K   K     S LE+++TTLHAGGKFD  TY++SGGLHGVG+S V ALS ++ V V + 
Sbjct: 61  EKESQKQGREVSALEVVMTTLHAGGKFDKETYKVSGGLHGVGVSCVCALSSKMIVNVYKD 120

Query: 177 NTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAY 236
             ++   FS+G  +  L         +GTRITF PD +       FD   L K  +  A+
Sbjct: 121 GRVWEMHFSQGKVIKSLADMGATSK-KGTRITFWPD-ETVMTVTEFDYDILAKRLRELAF 178

Query: 237 LSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           L+  +   +  ++   +         F + GGLK+++    E R  
Sbjct: 179 LNRGISIFFQDERHDDKDD-----VNFRYDGGLKSFVSYLNEIRPP 219


>gi|83755259|gb|ABC46477.1| gyrase B [Candidatus Paenicardinium endonii]
          Length = 412

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 161/418 (38%), Positives = 229/418 (54%), Gaps = 15/418 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD ++Y++SGGLHGVG+S VNALS  L VTV R   I+ Q +++G PL  ++    
Sbjct: 1   AGGKFDKNSYKVSGGLHGVGVSCVNALSSHLQVTVYRNGKIYQQTYAQGTPLHAVQAIGA 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             + RGT + F PD  IF     ++A  +    Q  AYL+  ++      +E  E    P
Sbjct: 61  T-DLRGTTVHFTPDSTIFTTTV-YNAHTIANRLQELAYLNLGLRITLEDKRERNE-SQEP 117

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-S 317
            K+ FY   GL+ ++      +  I  E    +  K       V+ A+ +     E   S
Sbjct: 118 FKQTFYSKEGLRAFVLHLSSGKEFIMPEPILIEGTKNNV---AVQVAMTYNTGYSETVAS 174

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIR 375
           Y N I T EGG H +G + ALTR +K YA+ +    K  + II DD       ++SV + 
Sbjct: 175 YVNNIPTIEGGMHVTGFKRALTRTLKNYADKSNLLEKAKVEIIGDDFREGLTAVISVKVA 234

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRK 434
           EP+F GQTK KL + + Q  VE+ + +   +YL ++P EA  +++ VI      +  R+ 
Sbjct: 235 EPQFEGQTKAKLGNAEVQGAVESCVAETLYYYLEEHPKEAKYIIDKVIIAAQARQAARKA 294

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +  + RK  +    LPGKLADCS+      ELF+VEGDSAGG+AK  RNR  QA+LPL+G
Sbjct: 295 REIIQRKNVLVGSSLPGKLADCSERDPKLCELFLVEGDSAGGTAKMGRNRRFQAILPLKG 354

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-----RSQYREEDLRYEKVIIMTDADVD 547
           KILNV  A   KI +N+QI +++ ALG              + LRY K++IMTDADVD
Sbjct: 355 KILNVEKAQLYKIYDNEQIRNMITALGITLGKDIEDKPMDLDKLRYHKIVIMTDADVD 412


>gi|163256324|dbj|BAF95672.1| DNA gyrase subunit B [Bradyrhizobium sp. KO17]
          Length = 271

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 102/281 (36%), Positives = 157/281 (55%), Gaps = 11/281 (3%)

Query: 80  EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139
           E +D+A+DE +AG+A+ + V+L+ +  +TV D+GRGIPV+ H K    S  E+I+T LHA
Sbjct: 1   EAVDDAIDEALAGHASRVLVTLNADNSVTVYDDGRGIPVDIH-KGEGVSAAEVIMTQLHA 59

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD ++Y++SGGLHGVG+SVVNALS +L + + R +     +F+ G  ++PL+     
Sbjct: 60  GGKFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHGDAVAPLKVVGDA 119

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
             KRGT +TF   P+ F +   +D A L    +  A+L+  V    S  +   EK     
Sbjct: 120 PGKRGTEVTFLASPETFKN-IEYDFATLEHRLRELAFLNSGVNIVLSDMRHAVEKR---- 174

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSY 318
            EE ++ GG++ +++    N+  I       ++E  G     VE A+ W +   E    +
Sbjct: 175 -EEMHYSGGVEEFVKYLDRNKKAIVPAPIMVRSEANGI---GVEAALWWNDSYHENVLCF 230

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359
            N I   +GGTH +G R ALTR +  YAE    K  I++  
Sbjct: 231 TNNIPQRDGGTHLAGFRGALTRQVNGYAEANAKKEKIALTG 271


>gi|84310508|gb|ABC55402.1| DNA gyrase subunit B [Bacillus amyloliquefaciens]
          Length = 390

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 151/399 (37%), Positives = 219/399 (54%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            S Y++SGGLHGVG SVVNALS  L VTV R   I  Q + RG+P++ LE      +K G
Sbjct: 1   GSGYKVSGGLHGVGASVVNALSTTLDVTVHRDGKIHYQAYERGVPVADLEVIGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F PDP+IF +   +D   L    +  A+L+  V       +E  E+        ++
Sbjct: 60  TITHFVPDPEIFKETTVYDYDLLSNRVRELAFLTKGVNITIEDKREGQERKNE-----YH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K+Y++    ++ +I  E    + EK G    TVE A+ + +     I S+ N I 
Sbjct: 115 YEGGIKSYVEYLNRSKEVIHEEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNIN 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G +  LTR I  YA       +   ++  DD+      I+S+   +P+F G
Sbjct: 172 TYEGGTHEAGFKTGLTRVINDYARRKGIFKENDPNLSGDDVREGLTAIISIKHPDPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNR 440
           QTKTKL + +A+   +       + +L++NP  A K++E  +  +  R+  +K      R
Sbjct: 232 QTKTKLGNSEARTITDTLFSSALETFLLENPDSARKIVEKGLMAARARMAAKKARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 292 KSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
            A  +KI +N ++  ++ ALG      +  E  RY KV+
Sbjct: 352 KARLDKILSNNEVRSMITALGPGIGEDFNLEKARYHKVV 390


>gi|148536444|gb|ABQ85774.1| DNA gyrase subunit B [Vibrio splendidus]
          Length = 403

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 155/413 (37%), Positives = 230/413 (55%), Gaps = 15/413 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +  G P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GT I F P  + F +   F    L K  +  ++L+  V       +E        
Sbjct: 61  T-DKTGTEIRFWPSEETFNN-IEFHYDILAKRLRELSFLNSGVSIKLIDKRE------ED 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F + GG++ +++    N++ I  +IF    E++     TVE A+ W +     I  
Sbjct: 113 KMDHFEYEGGIQAFVEHLNTNKTPIIQKIFHFDHERED--GITVEVAMQWNDGYQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GG H +G R ALTR +  + +      K   S   DD       I+SV + 
Sbjct: 171 FTNNIPQRDGGAHLAGFRGALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE+ + +    +L++NP EA  +   +I         R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADV 546
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADV
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADV 403


>gi|86169559|gb|ABC87019.1| DNA gyrase subunit B [Leuconostoc citreum]
          Length = 393

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 143/401 (35%), Positives = 218/401 (54%), Gaps = 13/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKR 203
              Y++SGGLHGVG SVVNALS  L V V R   ++   F  G +    ++  EK    R
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTNLDVKVVRDGQVYYMDFKVGRVNTRMVKLDEKPTIAR 60

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F+PD  IF +   F+   LL   +  A+L+  ++   + ++        P  E F
Sbjct: 61  GTIVHFKPDADIFRETTTFNYNTLLTRVRELAFLNKGLRISITDNR-----AETPMTESF 115

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTI 322
           ++ GG+K Y++     + ++  E    + E+ G     VE A+ +  +    + ++ N I
Sbjct: 116 HYEGGIKEYVKYLNAEKVVVFPEPVYVEGEENGI---VVEAALQYTTDVKDSLRTFTNNI 172

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE+G + ALTR I  YA      +    S+  +D+      I+S+   +P+F 
Sbjct: 173 NTYEGGTHETGFKTALTRVINDYARKNGQLKENAESLTGEDVREGMTAIVSIKHPDPQFE 232

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + DA++  +    + F  ++++NP  A +++E  I   + RL  ++ RE+  
Sbjct: 233 GQTKTKLGNSDARQATDRMFSETFSRFMMENPAVAKQIVEKGILAQKARLAAKRAREMTR 292

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +++ +    LPGKLAD + N    +ELFIVEGDSAGGSAKQ RNR  QA+LP+RGKILNV
Sbjct: 293 KQSGLEIGNLPGKLADNTSNDPAISELFIVEGDSAGGSAKQGRNRLTQAILPIRGKILNV 352

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +K+  N++I  L  A+G      +  E   Y KVII
Sbjct: 353 EKATLDKVLANEEIRSLFTAMGTGFGDDFNVEKANYHKVII 393


>gi|4996820|dbj|BAA78455.1| subunit B protein of DNA gyrase [bacterium rA1]
          Length = 319

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 109/326 (33%), Positives = 164/326 (50%), Gaps = 33/326 (10%)

Query: 72  KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKS 128
             LHHL  EV+DN++DE +AGY + I V++  +G L+V+DNGRGIP          P +S
Sbjct: 2   TGLHHLGFEVVDNSIDEALAGYCDDILVTIHADGSLSVIDNGRGIPTGVKMDDKHEPKRS 61

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
             EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV+R    +   FSRG 
Sbjct: 62  AAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSVWLKLTVSRDGQRYEIDFSRGH 121

Query: 189 P------------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAY 236
                        +SP+    +  +KRGT++ F PD +IF +   F    L K  +  ++
Sbjct: 122 VQNRLIEVVDGAEVSPMRVVGE-SDKRGTKVHFLPDQEIFKENFDFRYEILAKRLRELSF 180

Query: 237 LSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG 296
           L+  V+     +++  E         F   GG+K +++     + ++    F     +  
Sbjct: 181 LNNGVRIRLKDERDGKEDD-------FSGAGGVKGFVEFINGTKKVLHPTAFHAMGSRPA 233

Query: 297 T-------HRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
                       VE ++ W +   E    + N I   +GGTH +GLR A+TR I KY E 
Sbjct: 234 ETYGGIPGTEIGVEISMQWNDSYGEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIEQ 293

Query: 349 TQ--NKRAISIISDDLMISAVGILSV 372
                K  + +  DD+      +LSV
Sbjct: 294 NDLAKKAKVEVTGDDMREGLCAVLSV 319


>gi|4996812|dbj|BAA78451.1| subunit B protein of DNA gyrase [bacterium rM13]
          Length = 301

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 103/308 (33%), Positives = 155/308 (50%), Gaps = 31/308 (10%)

Query: 72  KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKS 128
             LHHL  EV+DN++DE +AGY + I V++  +G L+V+DNGRGIP          P +S
Sbjct: 2   TGLHHLVFEVVDNSIDEALAGYCDDILVTIHADGSLSVIDNGRGIPTGVKMDDKHEPKRS 61

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
             EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV+R    +   FSRG 
Sbjct: 62  AAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSVWLKLTVSRDGQRYEIDFSRGQ 121

Query: 189 P------------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAY 236
                        +SP+    +  +KRGT++ F PD +IF +   F    L K  +  ++
Sbjct: 122 VQNRLIEVVEGAEVSPMRVVGE-SDKRGTKVHFLPDQEIFKENFDFRYEILAKRLRELSF 180

Query: 237 LSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG 296
           L+  V+     +++  E         F   GG+K +++     + ++    F     +  
Sbjct: 181 LNNGVRIRLKDERDGKEDD-------FSGAGGVKGFVEFINGTKKVLHPTAFHAMGSRPA 233

Query: 297 T-------HRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
                       VE ++ W +   E    + N I   +GGTH +GLR A+TR I KY E 
Sbjct: 234 ETYGGIPGTEIGVEISMQWNDSYGEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIES 293

Query: 349 TQNKRAIS 356
               +   
Sbjct: 294 NDLAKKAK 301


>gi|20387186|dbj|BAB91293.1| gyrase B [Streptomyces mobaraensis]
          Length = 399

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 140/401 (34%), Positives = 218/401 (54%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL++ E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSSRVAVEVKTDGYRWTQDYKLGVPTAPLQQNEAT-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  +    + ++ +  ++ G P    +
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLTIALTDERPDHVDEEGKPLAVRY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           ++ GG+  +++     +  +          +    + ++E A+ W  +    + S+ N I
Sbjct: 119 HYEGGISDFVRYLNSRKGELIHPTVISLEAEDKERQLSLEIAMQWNSQYTEGVYSFANII 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I KYA   +   ++  ++  DD+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISVKLSEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+ A+ +    +L +NPIEA  ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKAVYEHLTDWLDRNPIEAADIIRKSIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLETASLPGKLSDCQSNDPAKCEIFIVEGDSAGGSAKSGRNPEYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  NQ+I  L+ A G      +  + LRY K+I+
Sbjct: 359 EKARIDKILQNQEIQALISAFGTGVHEDFDIDKLRYHKIIL 399


>gi|308153058|dbj|BAJ22118.1| DNA gyrase subunit B [Bacillus amyloliquefaciens]
          Length = 391

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 152/400 (38%), Positives = 220/400 (55%), Gaps = 13/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            S Y++SGGLHGVG SVVNALS  L VTV R   I  Q + RG+P++ LE      +K G
Sbjct: 1   GSGYKVSGGLHGVGASVVNALSTTLDVTVHRDGKIHYQAYERGVPVADLEVIGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F PDP+IF +   +D   L    +  A+L+  V       +E  E+        ++
Sbjct: 60  TITHFVPDPEIFKETTVYDYDLLSNRVRELAFLTKGVNITIEDKREGQERKNE-----YH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K+Y++    ++ +I  E    + EK G    TVE A+ + +     I S+ N I 
Sbjct: 115 YEGGIKSYVEYLNRSKEVIHEEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNIN 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G +  LTR I  YA       +   ++  DD+      I+S+   +P+F G
Sbjct: 172 TYEGGTHEAGFKTGLTRVINDYARRKGIFKENDPNLSGDDVREGLTAIISIKHPDPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNR 440
           QTKTKL + +A+   +       + +L++NP  A K++E  +  +  R+  +K      R
Sbjct: 232 QTKTKLGNSEARTITDTLFSSALETFLLENPDSARKIVEKGLMAARARMAAKKARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 292 KSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +KI +N ++  ++ ALG      +  E  RY KV+I
Sbjct: 352 KARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVVI 391


>gi|163256303|dbj|BAF95662.1| DNA gyrase subunit B [Bradyrhizobium sp. KO3B]
          Length = 269

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 98/279 (35%), Positives = 152/279 (54%), Gaps = 11/279 (3%)

Query: 82  IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141
           +DN +DE +AG+A  ++V L+ +  +TV D+GRGIPV+ H K    S  E+I+T LHAGG
Sbjct: 1   VDNGIDEALAGHATRVDVVLNADNSVTVRDDGRGIPVDIH-KGEGISAAEVIMTQLHAGG 59

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD ++Y++SGGLHGVG+SVVNALS +L + + R +     +F+ G  ++PL+       
Sbjct: 60  KFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHGDAVAPLKVVGDAPG 119

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           +RGT +TF   P+ F +   +D A L    +  A+L+  V    S  +   EK      E
Sbjct: 120 RRGTEVTFLASPETFKN-IEYDFATLEHRLRELAFLNSGVNIILSDMRHAVEKR-----E 173

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCN 320
           E ++ GG++ +++    N+  I       + +  G     VE A+ W +   E    + N
Sbjct: 174 EMHYSGGVEEFVKYLDRNKKAIVPAPIMVRADANGI---GVEAALWWNDSYHENVLCFTN 230

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359
            I   +GGTH +G R ALTR +  Y E    K  I++  
Sbjct: 231 NIPQRDGGTHLAGFRGALTRQVNGYXEANAKKEKIALTG 269


>gi|110612675|gb|ABG78300.1| GyrB [uncultured bacterium]
          Length = 406

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 146/416 (35%), Positives = 218/416 (52%), Gaps = 13/416 (3%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FDN+TY++SGGL GVG+SVVNALS+ L + + ++   F Q + +G P SPL       ++
Sbjct: 1   FDNNTYKVSGGLRGVGVSVVNALSETLLLDIDQKGQHFHQVYHKGAPDSPLAVTG-SSDR 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT I F PD  I      F    L    +  ++L+  +    + ++ + E         
Sbjct: 60  TGTAIRFYPDLTIMETD-QFSYDVLAHRFRELSFLNPSLTITLAEEETLRE-------SV 111

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
           F+  GG++++L    EN+ ++   +F  K  + G     + +      +   + SY N I
Sbjct: 112 FHDEGGIRSFLSFVNENKRVLHEPLFFRKVLENGAT-FEISFQYQDTTDAETLLSYVNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T EGG+H  G R ALT+ + ++       +   +  +D+      I+S+ I  P+F GQ
Sbjct: 171 PTREGGSHVRGFRSALTKVVNRFIRDKNLNKGEEVKGEDIREGLSAIVSIKIPNPQFEGQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TK KL S      +E  L +  +    +    A  + +  I  ++ R   RK RE   RK
Sbjct: 231 TKAKLGSSWVAGAMETFLSESLEDAFEKQGAIARAIADKAILSAQAREAARKARELTKRK 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC +N    +EL+IVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  
Sbjct: 291 NVLEGSNLPGKLADCQENDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKGKILNVEK 350

Query: 502 AG-SEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLL 555
               EK   + ++  L+ A+GC    +      LRY K+IIMTDADVDG+HI +LL
Sbjct: 351 TKGVEKFITHDEVRALITAVGCGLGDEDFSLKNLRYHKIIIMTDADVDGSHIRTLL 406


>gi|307939350|gb|ADN95866.1| DNA gyrase B [Hymenobacter ocellatus]
          Length = 437

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 169/430 (39%), Positives = 232/430 (53%), Gaps = 22/430 (5%)

Query: 137 LHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK 196
           LHAGG FD  +Y++SGGLHGVG+S VNALS+ L VTV +   ++ Q++ RG PL P+++ 
Sbjct: 6   LHAGGXFDKDSYKVSGGLHGVGMSCVNALSNLLRVTVFKDGKVYQQEYERGAPLYPVKQI 65

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
            +    RGT++ F PD  IF D   +    +    +  +YL+  ++      +EI E   
Sbjct: 66  GET-ESRGTQVEFWPDDTIFTDTV-YRYETIAARLRELSYLNKGIRINLLDKREIDENG- 122

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI- 315
           +   E+FY  GGL  ++Q                   +KG     VE A+ + +   E  
Sbjct: 123 VARGEQFYSEGGLAEFVQYLDGAERRALMPKPIHVVSEKG--NVPVEVALQYNDSYQEHV 180

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVF 373
            SY N I T EGGTH +G R ALTR +K YA+ +    K  I I  DD       ++SV 
Sbjct: 181 FSYVNNINTHEGGTHVAGFRAALTRTLKAYADKSGKLAKEKIEISGDDFREGITAVISVK 240

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRR 432
           + EP+F GQTKTKL + +    V   + +    YL +NP EA  +++ VI         +
Sbjct: 241 VAEPQFEGQTKTKLGNSEVSGAVNTVVGEILAQYLEENPKEAILIVDKVILAAKARIAAK 300

Query: 433 RKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           + +  V RKT +    LPGKLADCS+      EL++VEGDSAGG+AKQ RNR+ QA+LPL
Sbjct: 301 KAREMVQRKTVMGSFSLPGKLADCSETDPEICELYLVEGDSAGGTAKQGRNRAFQAILPL 360

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-------------DLRYEKVI 539
           RGKILNV  A    I  NQ+I +++ ALG         E              LRY KVI
Sbjct: 361 RGKILNVEKAQEHHIYENQEIRNMITALGVSFGVPADPERGIEKDDKALNLSKLRYHKVI 420

Query: 540 IMTDADVDGA 549
           IMTDADVDG+
Sbjct: 421 IMTDADVDGS 430


>gi|159894992|gb|ABX09842.1| DNA gyrase beta subunit [Vibrio sp. SB-84]
 gi|159894994|gb|ABX09843.1| DNA gyrase beta subunit [Vibrio sp. seaur.1.1]
          Length = 401

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 152/411 (36%), Positives = 232/411 (56%), Gaps = 15/411 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVVGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             ++ GT+I F P  + F +   F    L K  +  ++L+  V      ++E        
Sbjct: 61  T-DQTGTQIRFWPSAETFTN-IEFHYDILAKRLRELSFLNSGVSIKLVDEREAD------ 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F F GG++ ++     N++ I  +IF    E++      VE A+ W +     I  
Sbjct: 113 KSDHFMFEGGIQAFVDHLNTNKTPIIEKIFHFDFERED--GIAVEVAMQWNDGFQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV + 
Sbjct: 171 FTNNIPQRDGGTHLAGFRAALTRTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ +    +L++NP EA  +   +I+        R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDA
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDA 401


>gi|20387200|dbj|BAB91300.1| gyrase B [Streptomyces orinoci]
          Length = 399

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 139/401 (34%), Positives = 214/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G P +PL++ E      G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSSRVAVEVRTDGFRWTQDYKLGAPTAPLQQNEPTEE-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  +    + ++ +  ++ G P    +
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLTISLTDERPDHVDEEGKPLSVRY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTI 322
           ++ GG+  +++     +  +          +    + ++E A+ W  +  E + S+ N I
Sbjct: 119 HYEGGISDFVRYLNSRKGELVHPTVIDFEAEDTERKLSLEVAMQWNTQYSEGVYSFANII 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  + KYA   +   ++  ++  DD+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTSLVNKYARDKKLLREKDDNLTGDDIREGLTAIISVKLSEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+ A+ +    +L +NP EA  ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKAVYEHLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPEYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  NQ+I  L+ A G      +    LRY K+I+
Sbjct: 359 EKARVDKILQNQEIQALISAFGTGVHEDFDISKLRYHKIIL 399


>gi|307939292|gb|ADN95837.1| DNA gyrase B [Hymenobacter antarcticus]
          Length = 432

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 165/438 (37%), Positives = 244/438 (55%), Gaps = 27/438 (6%)

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFD  +Y++SGGLHGVG+  VNALS +L VTV R    + Q++  GIP   ++
Sbjct: 1   TVLHAGGKFDKGSYKVSGGLHGVGVRXVNALSTDLKVTVRRNGHKYEQEYKIGIPQYDVK 60

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
           +   +  + GT + F PD  IF +   +    +    +  +YL+  ++   +  +E  E 
Sbjct: 61  EVG-LSEEHGTEVQFLPDASIFTE-TEYRYDTVAGRLRDLSYLNKGIRITLTDRREKLE- 117

Query: 255 YGIPEKEEFYFPGGLKTYLQT-KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
            G+   EEFY  GGL+ ++Q    E R  + SE    ++EK GT    VE A+ +     
Sbjct: 118 GGVFRGEEFYSTGGLRDFVQYLDGEQRPSLLSEPIYVESEKGGTP---VEVALQYNTSYQ 174

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGIL 370
             + SY N I T EGGTH +G R A+TR +K Y +  +   K  + I  DD       ++
Sbjct: 175 ENVYSYVNNINTIEGGTHVAGFRSAVTRVLKTYGDKNKLFEKAKVEITGDDFREGLTAVI 234

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV ++EP+F GQTKTKL + +    V + + +    YL +NP +A +++E VI  ++ R+
Sbjct: 235 SVKVQEPQFEGQTKTKLGNSEVSGAVNSVVGEILTQYLDENPNQANRIMEKVILAAKARI 294

Query: 431 RRRKQREVNRKTAIRKLRL-PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK +++ ++  +      PGKLADCS++     EL++VEGDSAGG+AKQ RNR+ QA+
Sbjct: 295 AARKAKDMVQRKGVLSSNSLPGKLADCSESDPEICELYLVEGDSAGGTAKQGRNRAFQAI 354

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY----------------REEDL 533
           LPLRGKILNV  A   +I  N++I +++ ALG     +                     L
Sbjct: 355 LPLRGKILNVEKAQEHRILENEEIKNMITALGVTFNERKSLAFTTDDDGTESGPLNFSKL 414

Query: 534 RYEKVIIMTDADVDGAHI 551
           RY +VII TDADVDG  I
Sbjct: 415 RYHQVIIXTDADVDGXDI 432


>gi|60459504|gb|AAX20088.1| DNA gyrase subunit B [Leptospira interrogans serovar Djasiman]
          Length = 143

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 76/142 (53%), Positives = 107/142 (75%), Gaps = 1/142 (0%)

Query: 50  RILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTV 109
           +ILEGLE VR RPGMYIG  DE  LH +  EV+DN++DE +AG+   I++S+  +  + V
Sbjct: 1   KILEGLEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEIKISILPDNIVEV 60

Query: 110 VDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDEL 169
            DNGRGIPV+ HP     ST+E+++T LHAGGKF+N  Y++SGGLHGVG+SVVNALS+ L
Sbjct: 61  KDNGRGIPVDIHP-DKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYL 119

Query: 170 HVTVARQNTIFSQKFSRGIPLS 191
            V V ++  +++QK+ +G+P+S
Sbjct: 120 EVEVHQKGKVYTQKYEKGVPVS 141


>gi|35210335|dbj|BAC92679.1| gyrase B subunit [Alicyclobacillus acidiphilus]
          Length = 388

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 131/399 (32%), Positives = 213/399 (53%), Gaps = 14/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            + Y++SGGLHGVG SVVNALS  L V V R   ++ Q++ RG+PL  L       ++ G
Sbjct: 1   GAGYKVSGGLHGVGASVVNALSIWLRVEVHRDGQVYEQEYERGVPLYDLRVIG-TTDRTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T ++FRPDP+IF +   F    L    +  A+L+  +      +++        ++ ++ 
Sbjct: 60  TTVSFRPDPEIFTETTEFSFETLQGRLRELAFLNAGLNIILEDERD-------GKRVDYR 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTIL 323
           + GG+  +++   +++ ++  +       K      TVE A+ + +        + N I 
Sbjct: 113 YEGGVSEFVRFLNQSKDVLFPDPVFVSGVKDDV---TVEIALQYNDGYSSTLYSFANNIN 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G + ALTR I  Y       ++   S+  DD+      ++SV + EP+F G
Sbjct: 170 TGEGGTHEAGFKSALTRVINDYGRKNNLLKSNDGSLTGDDVREGLTAVISVKVPEPQFEG 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + + +  VE+   +    +L +NP  A ++L+  +  +  R   ++ RE+ R 
Sbjct: 230 QTKTKLGNSEVRGIVESLFGEHLQIFLEENPTVARRILDKSVMAARAREAAKRARELTRS 289

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKL DC       +EL++VEGDSAGGSAK  R+   QA+LPLRGKI+NV  
Sbjct: 290 KKMDVTSLPGKLTDCVSKDPEMSELYLVEGDSAGGSAKGGRDPQTQAILPLRGKIINVEK 349

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +KI +N++I  ++ A G     ++     RY K++I
Sbjct: 350 ARLDKILSNEEIRAIITACGTGIGDEFDITKARYHKIVI 388


>gi|148470246|gb|ABQ66070.1| gyrase b [uncultured bacterium]
 gi|148470250|gb|ABQ66072.1| gyrase b [uncultured bacterium]
          Length = 417

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 157/423 (37%), Positives = 223/423 (52%), Gaps = 13/423 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFDN+TY++SGGLHGVG+SVVNALS+ L + + ++   F Q + +GIP 
Sbjct: 1   EVIMTVLHAGGKFDNNTYKVSGGLHGVGVSVVNALSETLFLDIDQKGNHFRQIYHKGIPE 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           SPL           T I F PD  I      F    L    +   YL+  +         
Sbjct: 61  SPLAITGTSETTG-TSIRFYPDLTIMET-DAFSFDVLAHRFRELGYLNPALTII------ 112

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
              +     +E F+  GG++++L    EN+  I   +   K+   G+    V +      
Sbjct: 113 -LREEETLREEVFHDEGGIRSFLLFINENKRTIHDPLSFRKSFDNGST-FEVSFQYQDTT 170

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
           +   + SY N I T EGGTH  G R ALTR + ++ +     +   +  +D+      I+
Sbjct: 171 DAETLLSYVNNIPTREGGTHVRGFRAALTRVVNRFIKEKNLNKGEEVKGEDIREGLSAII 230

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           S+ I  P+F GQTK KL S      +E  L +  +    +    A  + +  I  ++ R 
Sbjct: 231 SIKIPNPQFEGQTKAKLGSSWVSGAMETFLAESLEDAFEKQGAVARAIADKAILSAQARE 290

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK RE   RK  +    LPGKLADC +N    +EL+IVEGDSAGGSAKQ R+R  QA+
Sbjct: 291 AARKARELTKRKNVLEGSNLPGKLADCQENDPAKSELYIVEGDSAGGSAKQGRDRRFQAI 350

Query: 490 LPLRGKILNVASAG-SEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVD 547
           LPL+GKILNV  +   EK   + ++  L+ A+GC   ++      LRY K+IIMTDADVD
Sbjct: 351 LPLKGKILNVEKSKGVEKFITHDEVRALITAVGCGLGAEEFSLKNLRYHKIIIMTDADVD 410

Query: 548 GAH 550
           G+H
Sbjct: 411 GSH 413


>gi|145309489|dbj|BAF56642.1| DNA gyrase subunit B [Alicyclobacillus fastidiosus]
          Length = 390

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 142/400 (35%), Positives = 216/400 (54%), Gaps = 14/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            + Y++SGGLHGVG SVVNALS  L V V R   ++ Q++ RG+P   L+      ++ G
Sbjct: 1   GAGYKVSGGLHGVGASVVNALSTWLKVEVYRDGNVYVQEYERGVPQYDLKIIG-TTDQHG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T ++F PDP+IF +   F    L    +  A+L+  +      ++E        + +EF+
Sbjct: 60  TSVSFLPDPEIFTETTVFQIEMLQHRLRELAFLNAGLAIVLEDERE------GGKTQEFH 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K ++     ++ ++  +       K      TVE A+ + +     I S+ N I 
Sbjct: 114 YEGGVKEFVSYLNRSKDVLHEDPVFVAGVKDDV---TVEVALQYNDGYASTIYSFANNIN 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHESG + ALTR I  Y       +    ++  DD+    V ++SV + EP+F G
Sbjct: 171 TGEGGTHESGFKSALTRVINDYGRKNNLIKGNESNLTGDDVREGIVSVISVKVPEPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + + +  VE+   D    +L +NP  A K+++  +  S  R   RK RE   R
Sbjct: 231 QTKTKLGNSEVRGIVESLFGDKLQTFLDENPSVARKIIDKCVTASRAREAARKARELTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKL DC       +E+++VEGDSAGGSAK  R+   QA+LPLRGKI+NV 
Sbjct: 291 KSALEVSSLPGKLTDCVTKDPERSEIYLVEGDSAGGSAKMGRDPQTQAILPLRGKIINVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +KI +N++I  ++ A G     ++     RY KV+I
Sbjct: 351 KARLDKILSNEEIRAIITASGTGIGDEFDLSKARYHKVVI 390


>gi|159895006|gb|ABX09849.1| DNA gyrase beta subunit [Vibrio parahaemolyticus]
          Length = 400

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 153/410 (37%), Positives = 234/410 (57%), Gaps = 15/410 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GT+I F P  + F +   F    L K  +  ++L+  V      ++E        
Sbjct: 61  T-DKTGTQIRFWPSAETFSN-TEFHYDILAKRLRELSFLNSGVSIKLIDEREAD------ 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +++ F + GG++ ++Q    N++ I  +IF    E++     +VE A+ W +     I  
Sbjct: 113 KQDHFMYEGGIQAFVQHLNTNKTPIIEKIFHFDLERED--GISVEVAMQWNDGFQENIFC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV + 
Sbjct: 171 FTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ +    +LV+NP EA  +   +I+        R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTD 543
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTD
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTD 400


>gi|29652669|gb|AAO87304.1| DNA gyrase B [Listeria monocytogenes]
          Length = 189

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 86/191 (45%), Positives = 117/191 (61%), Gaps = 2/191 (1%)

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 1   RKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILN 60

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 61  VEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTL 120

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+K
Sbjct: 121 FYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYK 178

Query: 619 GLGEMLASQLK 629
           GLGEM   QL 
Sbjct: 179 GLGEMNPEQLW 189


>gi|60459482|gb|AAX20077.1| DNA gyrase subunit B [Leptospira interrogans serovar Medanesis]
          Length = 143

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 78/142 (54%), Positives = 107/142 (75%), Gaps = 1/142 (0%)

Query: 50  RILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTV 109
           +ILEGLE VR RPGMYIG  DE  LH +  EV+DN++DE +AG+   I++S+  +  + V
Sbjct: 1   KILEGLEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEIKISILPDNIVEV 60

Query: 110 VDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDEL 169
            DNGRGIPV+ HP     ST+E+++T LHAGGKF+N  Y++SGGLHGVG+SVVNALS+ L
Sbjct: 61  KDNGRGIPVDIHP-DKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYL 119

Query: 170 HVTVARQNTIFSQKFSRGIPLS 191
            V V ++  +++QK+ RGIP+S
Sbjct: 120 EVEVHQKGKVYTQKYERGIPVS 141


>gi|29652797|gb|AAO87368.1| DNA gyrase B [Listeria monocytogenes]
          Length = 180

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 86/182 (47%), Positives = 115/182 (63%), Gaps = 2/182 (1%)

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I  
Sbjct: 1   PGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILA 60

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ M  L++ 
Sbjct: 61  NEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDA 120

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
            ++++  PPL++I  G +  Y + +   +  L      G  K  I R+KGLGEM   QL 
Sbjct: 121 GYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYKGLGEMNPEQLW 178

Query: 630 ET 631
           +T
Sbjct: 179 DT 180


>gi|194477400|gb|ACF74796.1| DNA gyrase subunit B [Halorubrum lacusprofundi]
          Length = 405

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 154/409 (37%), Positives = 223/409 (54%), Gaps = 11/409 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE---KVRNKRGTR 206
           +SGGLHGVG+SVVNALS+ L V V R   ++  +F+RG P     ++        + GT 
Sbjct: 1   VSGGLHGVGVSVVNALSERLEVEVKRDGGVYRHEFARGEPAEDGFERVRDLNDDEETGTY 60

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F PD +IF     F+ + L    +  A+L+  V      +++        ++E F + 
Sbjct: 61  IRFWPDEEIFETT-AFEFSTLASRLRELAFLNSGVAVTLIDERDEEGVDDAGDEETFRYE 119

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTILTD 325
           GG++ ++    E R+ I  E+   + E    H   VE A+   EE    + ++ N I T 
Sbjct: 120 GGIREFVGYLNEARTPIHDEVIYFEDEDDDIH---VEVAMQATEELQGSVHAFANNINTR 176

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQT 383
           EGGTH +G + ALTR +  YA           ++  +D+      ++SV   +P+F GQT
Sbjct: 177 EGGTHLTGFKTALTRTVNDYANTHGLVDDLEANLKGEDVREGLTAVISVKHPDPQFEGQT 236

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKT 442
           KTKL + + +  VE+A  D    +  +NP  A K++    E +  R   +K  E   RK+
Sbjct: 237 KTKLGNSEVRGIVESATHDKLGTFFEENPDTARKVVHKAAEAARARKAAKKAEELTRRKS 296

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC        ELF+VEGDSAGGSAKQ RNR NQA+LPL+GKILNV   
Sbjct: 297 ALESTALPGKLADCQTRDPEEAELFVVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKH 356

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHI 551
             ++I  N +I  L+ A+G     ++  +D+RY K+IIMTDADVDGAHI
Sbjct: 357 RLDRILENDEIRALITAIGAGIGEEFDIDDVRYNKIIIMTDADVDGAHI 405


>gi|145309474|dbj|BAF56639.1| DNA gyrase subunit B [Alicyclobacillus tolerans]
          Length = 390

 Score =  228 bits (580), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 139/400 (34%), Positives = 218/400 (54%), Gaps = 14/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            S Y++SGGLHGVG SVVNALS  L V V R   I+ Q++ RG PL  L       +  G
Sbjct: 1   GSGYKVSGGLHGVGASVVNALSTWLRVEVHRDGKIYEQEYERGTPLYDLRVIGST-DHTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T ++FRPDP+IF +   FD+  L    +  A+L+  ++  +  +++  +K        F+
Sbjct: 60  TSVSFRPDPEIFTETIVFDSEILQNRLRELAFLNAGLEIIFQDERDGGKKLN------FH 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTIL 323
           + GG+  +++   +++ ++  +      +K      TVE A+ + +        + N I 
Sbjct: 114 YSGGVAEFVEFLNKSKDVLHEDPVFVSGKKDDV---TVEIALQYNDGYSATLFSFANNIN 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHESG + ALTR I  +A       +   ++  DD+      I+SV + EP+F G
Sbjct: 171 THEGGTHESGFKSALTRVINDFARKLNAIKESDNNLTGDDVREGLTAIISVKVPEPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNR 440
           QTKTKL + + +  VE+   +    +L ++P  A K++E  V+        R+ +    R
Sbjct: 231 QTKTKLGNSEVRGIVESLFGEKLQTFLDEHPSVAKKIVEKAVMAARAREAARKARELTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADCS   A   EL+IVEGDSAGGSAK  R+R+ QA+LP+RGKI+NV 
Sbjct: 291 KNALEVSSLPGKLADCSSKDASICELYIVEGDSAGGSAKSGRDRTFQAILPIRGKIINVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            +  +K+ +N+++  ++ A G      +     RY K++I
Sbjct: 351 KSRLDKVLSNEEVRSIITASGTGIGEDFDITKARYHKIVI 390


>gi|4996828|dbj|BAA78459.1| subunit B protein of DNA gyrase [bacterium rA7]
          Length = 295

 Score =  228 bits (580), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 100/298 (33%), Positives = 151/298 (50%), Gaps = 29/298 (9%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPN 126
           D   LHHL  EV+DN++DE +AGY + I V++  +G L+V+DNGRGIP          P 
Sbjct: 3   DGTGLHHLVFEVVDNSIDEALAGYCDDILVTIHADGSLSVIDNGRGIPTGVKMDDKHEPK 62

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV R+       FSR
Sbjct: 63  RSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSSWLKLTVRREGRTHEIDFSR 122

Query: 187 GIPLSP-----------LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           G   +              +     +KRGT++ F PD +IF +   F    L K  +  +
Sbjct: 123 GHVQNRLIEVVDGFEVSPMRIIGQTDKRGTKVHFLPDTEIFKENHEFRYEILAKRLRELS 182

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V+     +++  E         F   GG+K +++     + ++    F     + 
Sbjct: 183 FLNNGVRIRLKDERDGREDD-------FSGAGGVKGFVEFINGTKKVLHPTTFHAVGSRP 235

Query: 296 GT-------HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY 345
                        VE ++ W +    ++  + N I   +GGTH +GLR A+TR I KY
Sbjct: 236 AESYGGIPGTEIGVEVSMQWNDSYAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKY 293


>gi|35210333|dbj|BAC92678.1| gyrase B subunit [Alicyclobacillus sp. MIH 332]
 gi|145309471|dbj|BAF56638.1| DNA gyrase subunit B [Alicyclobacillus sp. IAM 14934]
          Length = 389

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 138/399 (34%), Positives = 214/399 (53%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS  + V V R   I+ Q++ RG PL  L+      +K G
Sbjct: 1   GKGYKVSGGLHGVGASVVNALSLWMRVEVHRDGHIYVQEYERGTPLYDLKVIG-TTDKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+++F+PDP+IF +   F A  L+   +  A+L+  ++  +  ++E        ++  F 
Sbjct: 60  TKVSFKPDPEIFTETTVFSAETLMNRLRELAFLNAGLEIVFEDERE------GGKRAVFK 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+  +++   +++ ++  +       K       VE A+ + +       S+ N I 
Sbjct: 114 YDGGVAEFVRWLNQSKDVLFDDPIYVSAVKDDV---AVEIALQYNDGYTATVYSFANNIN 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G + ALTR I  YA      +    S+  DD+      ++SV + EP+F G
Sbjct: 171 TAEGGTHEAGFKSALTRVINDYARRYGFLKSNDNSMTGDDVREGLTAVVSVKVPEPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + + +  VE    +    +L +NP  A K+++  I  +  R   R+ RE+ R 
Sbjct: 231 QTKTKLGNSEVRGIVETLFAERMQMFLEENPAIARKIVDKCILAARAREAARRARELTRS 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKL DCS      +ELF+VEGDSAGGSAK  R+   QA+LPLRGKI+NV  
Sbjct: 291 KKMDVTSLPGKLTDCSSKDPERSELFLVEGDSAGGSAKMGRDPQTQAILPLRGKIINVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +K+  N++I  ++ A G      +     RY K++I
Sbjct: 351 ARLDKVLANEEIRAIITACGTGIGDDFDISKARYHKIVI 389


>gi|148971413|gb|ABR20244.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 424

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 144/431 (33%), Positives = 223/431 (51%), Gaps = 13/431 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD  TY++SGGLHGVG+S VNALS  L V V +    ++  F+RG  +
Sbjct: 1   EVIMTVLHAGGKFDKDTYKVSGGLHGVGVSCVNALSKALDVNVCKGGHEYTISFARGKVV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL+K  + +  RGT ++F P  +IF     +    +    +  A+L+  ++  ++ ++ 
Sbjct: 61  APLKKLGESKK-RGTTVSFIPVEQIFSV-TTYYYQTIYNRLRELAFLNKGLEIIFTDERN 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWC 309
                 +     F   GG+ +++Q     ++ +       +  +       + E A+ W 
Sbjct: 119 TDHAEAV-----FNAEGGIVSFVQFLNGTKTPLFPRPHLYQGSRPLHDGTLSFEVAMQWN 173

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISA 366
           E     + SY N I T +GGTH  G   ALTR +  Y +     +        D +    
Sbjct: 174 ETYTETVFSYVNNIATRQGGTHLPGFSTALTRVLNSYIKNHHLYQNAKTPITGDFVRPGM 233

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             I+S  +  P+F GQTK KL   D     +  + + F  Y  ++P  A  +++     +
Sbjct: 234 AAIISAKVPTPQFKGQTKQKLGPGDVGSAAQQIVGEEFATYPQEHPSIAKIIVDKAALAA 293

Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
           + R   RK RE   RK+ + + RLPGK  DCS+      +++IVEGDSAGGSAK  R+R 
Sbjct: 294 QAREAARKAREWTQRKSVLDRARLPGKSTDCSERDPAKCQIYIVEGDSAGGSAKGGRDRR 353

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDA 544
            QA+LP+RG I NV  +  +K+  N Q+  +  A GC         E LRY  +I++TDA
Sbjct: 354 FQAILPIRGTIPNVEKSRLQKVLQNTQVGSMFSAFGCGIGKDGFYLEKLRYHTIILLTDA 413

Query: 545 DVDGAHIASLL 555
           DVDG+HI +LL
Sbjct: 414 DVDGSHIRTLL 424


>gi|84310498|gb|ABC55397.1| DNA gyrase subunit B [Bacillus amyloliquefaciens]
 gi|84310502|gb|ABC55399.1| DNA gyrase subunit B [Bacillus amyloliquefaciens]
 gi|84310504|gb|ABC55400.1| DNA gyrase subunit B [Bacillus amyloliquefaciens]
 gi|84310510|gb|ABC55403.1| DNA gyrase subunit B [Bacillus amyloliquefaciens]
          Length = 390

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 151/399 (37%), Positives = 219/399 (54%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            S Y++SGGLHGVG SVVNALS  L VTV R   I  Q + RG+P++ LE      +K G
Sbjct: 1   GSGYKVSGGLHGVGASVVNALSTTLDVTVHRDGKIHYQAYERGVPVADLEVIGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F PDP+IF +   +D   L    +  A+L+  V       +E  E+        ++
Sbjct: 60  TITHFVPDPEIFKETTVYDYDLLSNRVRELAFLTKGVNITIEDKREGQERKNE-----YH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K+Y++    ++ +I  E    + EK G    TVE A+ + +     I S+ N I 
Sbjct: 115 YEGGIKSYVEYLNRSKEVIHEEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNIN 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G +  LTR I  YA       +   ++  DD+      I+S+   +P+F G
Sbjct: 172 TYEGGTHEAGFKTGLTRVINDYARRKGIFKENDPNLSGDDVREGLTAIISIKHPDPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNR 440
           QTKTKL + +A+   +       + +L++NP  A K++E  +  +  R+  +K      R
Sbjct: 232 QTKTKLGNSEARTITDTLFSSALETFLLENPDSARKIVEKGLMAARARMAAKKARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 292 KSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
            A  +KI +N ++  ++ ALG      +  E  RY KV+
Sbjct: 352 KARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVV 390


>gi|60459496|gb|AAX20084.1| DNA gyrase subunit B [Leptospira interrogans serovar Bataviae]
 gi|60459498|gb|AAX20085.1| DNA gyrase subunit B [Leptospira interrogans serovar
           Hardjo-prajitno]
          Length = 143

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 76/141 (53%), Positives = 106/141 (75%), Gaps = 1/141 (0%)

Query: 51  ILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVV 110
           ILEGLE VR RPGMYIG  DE  LH +  EV+DN++DE +AG+   I++S+  +  + V 
Sbjct: 1   ILEGLEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEIKISILPDNIVEVK 60

Query: 111 DNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELH 170
           DNGRGIPV+ HP     ST+E+++T LHAGGKF+N  Y++SGGLHGVG+SVVNALS+ L 
Sbjct: 61  DNGRGIPVDIHP-DKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYLE 119

Query: 171 VTVARQNTIFSQKFSRGIPLS 191
           V V ++  +++QK+ +G+P+S
Sbjct: 120 VEVHQKGKVYTQKYEKGVPVS 140


>gi|198042690|gb|ACH81170.1| GyrB [Pseudoalteromonas sp. UST050418-011]
          Length = 392

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 141/398 (35%), Positives = 227/398 (57%), Gaps = 15/398 (3%)

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
           I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L +T+ R+  ++ Q ++ G+P +P
Sbjct: 1   IMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKLTIRREGKLYEQFYTMGVPDAP 60

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
           L          GT + F P  + F +   F    L K  +  ++L+  V    + ++E  
Sbjct: 61  LAAIGD-SETTGTELRFWPSAETFTN-LDFHYDILAKRLRELSFLNSGVSIILNDERE-- 116

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
                 + + F + GG++ +++    N++ +   +F    E++     +VE ++ W +  
Sbjct: 117 ----ENKSDHFKYEGGIRAFVEYLNRNKTPVHKGVFHFTHERE-EDGISVEVSMQWNDAF 171

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYA----ELTQNKRAISIISDDLMISAV 367
              I  + N I   +GGTH +G R ALTR +  Y        + K   +   DD      
Sbjct: 172 QENIYCFTNNIPQRDGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLT 231

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE A+ + F  +L++NP++A  ++  +I+   
Sbjct: 232 AVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQAMAEKFTEFLLENPMDAKIVVGKIIDAAR 291

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR N
Sbjct: 292 AREAARKAREMTRRKGAMDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKN 351

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC  
Sbjct: 352 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 389


>gi|110612681|gb|ABG78303.1| GyrB [uncultured bacterium]
          Length = 396

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 145/406 (35%), Positives = 221/406 (54%), Gaps = 13/406 (3%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FDN+ Y++SGGLHGVG+SVVNALS+ L++ + +   +  Q + +G P++PL    +   +
Sbjct: 1   FDNNLYKVSGGLHGVGVSVVNALSETLYLEIHQNGLVHRQTYHKGAPVAPLAVFGETA-Q 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
           RGT I F PD  I      F    L    +  A+L+  +   +  ++ + E       E 
Sbjct: 60  RGTIIRFWPDMTIMETD-QFSFETLAHRFREMAFLNPVLTIHFKDEETLRE-------ET 111

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
           F+F GG+++++    EN+  +   +F  K  + G+ +  V +      EN  +  + N I
Sbjct: 112 FHFDGGVQSFVSFLNENKKPLHDVLFFRKNLEDGS-QFEVAFQYQESTENETVLGFANNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T EGGTH  G R A+T+ I ++    Q  +   +  +D+     G++SV I  P+F GQ
Sbjct: 171 HTREGGTHVQGFRTAITKTINRFIREKQLNKGEEVRGEDVREGLTGVISVRIPSPQFGGQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TK KL S      +E+ L +       ++P  A K+ E  +  ++ R   RK ++   RK
Sbjct: 231 TKAKLGSSWVSGAMESFLSEALQEKFEEDPQTAKKIAEKAVLTAQAREAARKAKDLAKRK 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC ++     EL+IVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  
Sbjct: 291 NVLEGSNLPGKLADCQESDPAKCELYIVEGDSAGGSAKQGRDRRFQAILPLKGKILNVEK 350

Query: 502 AG-SEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDAD 545
           +   EK   N ++  L+ A+GC    +   E+ LRY K+IIMTDAD
Sbjct: 351 SRGIEKFITNDEVRALITAVGCGLGDEEFSEKKLRYHKIIIMTDAD 396


>gi|313747308|dbj|BAJ41202.1| DNA gyrase subunit B [Bacillus sp. 2B205-2S]
          Length = 390

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 145/400 (36%), Positives = 216/400 (54%), Gaps = 14/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS E  V V R   I   KF RG  + PL       +  G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSIETDVQVHRDGHIHEIKFERGRTIQPLTIIGDT-DHNG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F+ DP IF +   ++   L    +  AYL+  +      ++          K+ ++
Sbjct: 60  TTTRFKADPTIFKETTVYEYDILAHRIRELAYLNRGITIIIMDER-----NEEIRKDVYH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K+Y++   EN+  +  E    K EK G    ++E A+ +       I S+ N I 
Sbjct: 115 YEGGIKSYVEQLNENKEPLH-EAIDLKGEKDGI---SIEIAMQYNSGFASTILSFANNIN 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHESG + ALTR I  YA      +    ++  +D+    V I+S+   +P+F G
Sbjct: 171 TYEGGTHESGFKTALTRVINDYARKNNLLKDADANLSGEDVREGLVAIVSIKHPDPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NR 440
           QTKTKL + +      +   + F+ +L++NP  A  +++  +  S  R+  +K RE+  R
Sbjct: 231 QTKTKLGNSEVSSITNSLFSERFERFLLENPTVARTIVDKGLIASRARVAAKKAREMTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS       E++IVEGDSAGGSAK  R+R  QA+LPLRGKILNV 
Sbjct: 291 KSALEISSLPGKLADCSSRHPEECEVYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  ++I +N++I  ++ A+G     ++  E  RY K++I
Sbjct: 351 KARLDRILSNEEIRAMITAVGTGIGEEFNLEKARYHKIVI 390


>gi|148536426|gb|ABQ85765.1| DNA gyrase subunit B [Aliivibrio fischeri]
 gi|164608580|gb|ABY62581.1| DNA gyrase beta subunit [Aliivibrio fischeri]
          Length = 402

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 152/412 (36%), Positives = 233/412 (56%), Gaps = 15/412 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I  Q +  G P +PL    K
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIHRAGEIHQQVYHHGEPEAPLAVIGK 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +  GT+I F P  + F +   F    L K  +  ++L+  V       +E        
Sbjct: 61  T-DTTGTKIRFWPSEETFTNVV-FVYEILAKRLRELSFLNSGVSIKLQDMRE------ED 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F + GG++ ++Q    N++ I  ++F   +E++     +VE ++ W +     I  
Sbjct: 113 KADHFMYEGGIQAFVQHLNRNKTPIHQKVFHFDSERED--GISVEVSMQWNDGFQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV + 
Sbjct: 171 FTNNIPQRDGGTHLAGFRSALTRTLNTFMDKEGFSKKAKAATSGDDAREGLTAVVSVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ +    +L +NP EA  +   +I+        R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLAENPSEAKMVCSKIIDAARAREAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDIAGLPGKLADCQEKDPGLSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDAD
Sbjct: 351 KILNVEKARFDKMLSSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMTDAD 402


>gi|259121545|gb|ACV92071.1| DNA gyrase subunit B [Bacillus sp. fiply 3A]
          Length = 389

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 150/398 (37%), Positives = 218/398 (54%), Gaps = 13/398 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            S Y++SGGLHGVG SVVNALS  L VTV R   I  Q + RG+P++ LE      +K G
Sbjct: 1   GSGYKVSGGLHGVGASVVNALSTTLDVTVHRDGKIHYQAYERGVPVADLEVIGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F PDP+IF +   +D   L    +  A+L+  V       +E  E+        ++
Sbjct: 60  TITHFVPDPEIFKETTVYDYDLLSNRVRELAFLTKGVNITIEDKREGQERKNE-----YH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K+Y++    ++ ++  E    + EK G    TVE A+ + +     I S+ N I 
Sbjct: 115 YEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNIN 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G +  LTR I  YA       +   ++  DD+      I+S+   +P+F G
Sbjct: 172 TYEGGTHEAGFKTGLTRVINDYARRKGIFKENDPNLSGDDVREGLTAIISIKHPDPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNR 440
           QTKTKL + +A+   +       + +L++NP  A K++E  +  +  R+  +K      R
Sbjct: 232 QTKTKLGNSEARTITDTLFSSALETFLLENPDSARKIVEKGLMAARARMAAKKARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 292 KSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538
            A  +KI +N ++  ++ ALG      +  E  RY KV
Sbjct: 352 KARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKV 389


>gi|35210339|dbj|BAC92681.1| gyrase B subunit [Alicyclobacillus acidoterrestris]
 gi|300068753|dbj|BAJ10558.1| DNA gyrase subunit B [Alicyclobacillus acidoterrestris]
          Length = 390

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 143/400 (35%), Positives = 217/400 (54%), Gaps = 14/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            S Y++SGGLHGVG SVVNALS  L V V R   ++ Q++ RG+P   L+      +K G
Sbjct: 1   GSGYKVSGGLHGVGASVVNALSSWLKVEVWRDGHVYVQEYERGVPKYDLKVVGDT-DKHG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF PDP+IF +   F    L    +  A+L+  +       +E        + +EF+
Sbjct: 60  TSVTFLPDPEIFTETTVFQIETLQHRLRELAFLNAGLAIVLEDQRE------GGKTQEFH 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K ++    +++ ++  +    +  K      T+E A+ + +     I S+ N I 
Sbjct: 114 YEGGVKEFVSYLNKSKDVLHPDPVFVEGVKDDV---TIEVALQYNDGYASTIYSFANNIN 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHESG + ALTR I  Y       +    ++  DD+    V ++SV + EP+F G
Sbjct: 171 TGEGGTHESGFKSALTRVINDYGRKNNLIKGSESNLTGDDVREGIVAVVSVKVPEPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + + +  VE+   D    +L +NP  A K+++  +  +  R   RK RE   R
Sbjct: 231 QTKTKLGNSEVRGIVESLFGDKLQTFLDENPSVARKIIDKCVTAARAREAARKARELTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKL DC       +E+++VEGDSAGGSAK  R+   QA+LPLRGKI+NV 
Sbjct: 291 KSALEVSSLPGKLTDCVSKDPERSEIYLVEGDSAGGSAKMGRDPQTQAILPLRGKIINVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +KI +N++I  ++ A G     ++     RY KV+I
Sbjct: 351 KARLDKILSNEEIRAIITAAGTGIGDEFDLSKARYHKVVI 390


>gi|307939328|gb|ADN95855.1| DNA gyrase B [Hymenobacter elongatus]
          Length = 422

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 166/428 (38%), Positives = 240/428 (56%), Gaps = 21/428 (4%)

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           +I+T L AGGKFD  +Y++SGGLHGVG+S VNALS +L VTV R   ++ Q++  G+P  
Sbjct: 1   LIMTVLXAGGKFDKDSYKVSGGLHGVGVSCVNALSQDLKVTVRRNGHVYQQEYKIGVPQY 60

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
           P+++        GT++ F PD  IF +   +    +    +  +YL+  ++   +  +E 
Sbjct: 61  PVKEIGDTEEH-GTQVEFLPDSSIFTESV-YKYDTIANRLRELSYLNKGIRIMLTDLREK 118

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
            +       EEFY  GGL  ++Q     R ++        +EK GT    VE A+ + + 
Sbjct: 119 NDDG-TFLGEEFYSQGGLSEFVQYLDSGRQVLMPNPIHVVSEKGGTP---VEVALQYNDS 174

Query: 312 NPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVG 368
             E   SY N I T EGGTH +G R ALTR +K YA+ +    K  + I  DD       
Sbjct: 175 YQEHIFSYVNNINTIEGGTHVAGFRSALTRTLKAYADKSGMLEKAKVEIQGDDFREGLTA 234

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           ++SV ++EP+F GQTKTKL + D    V   + +  + YL +NP EA  ++E VI  +  
Sbjct: 235 VISVKVQEPQFEGQTKTKLGNSDVSGAVNTVVGEILNQYLEENPKEARIIIEKVILAARA 294

Query: 429 RLRRRKQREVNRKTAIRKLRL-PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
           R+  RK RE+ ++  +      PGKLADCS++     EL++VEGDSAGG+AKQ RNR+ Q
Sbjct: 295 RIAARKAREMVQRKTVLGSNSLPGKLADCSESDPAICELYLVEGDSAGGTAKQGRNRAFQ 354

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-----------EDLRYE 536
           A+LPLRGKILNV  A   +I  N++I +++ ALG     +  E           + LRY 
Sbjct: 355 AILPLRGKILNVEKAQEHRIYENEEIRNMITALGVSFEKKTDEDDGSTTRSLNLDKLRYH 414

Query: 537 KVIIMTDA 544
           KVIIMTDA
Sbjct: 415 KVIIMTDA 422


>gi|145309477|dbj|BAF56640.1| DNA gyrase subunit B [Alicyclobacillus vulcanalis]
          Length = 389

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 138/399 (34%), Positives = 215/399 (53%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS  + V V R   I+ Q++ RG PL  L+      +K G
Sbjct: 1   GKGYKVSGGLHGVGASVVNALSSWMRVEVHRDGHIYVQEYERGTPLYDLKIIG-TTDKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+++F+PDP+IF +   F A  L+   +  A+L+  ++  +  ++E        ++  F 
Sbjct: 60  TKVSFKPDPEIFTETTVFSADTLINRLRELAFLNAGLEIVFEDERE------GGKRAVFK 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+  +++   +++ ++  +       K       VE A+ + +       S+ N I 
Sbjct: 114 YDGGVAEFVRWLNQSKEVLFDDPIYVSALKDDV---AVEIALQYNDGYAATVYSFANNIN 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G + ALTR I  YA      +    S+  DD+      ++SV + EP+F G
Sbjct: 171 TAEGGTHEAGFKSALTRVINDYARRYGMLKSNDNSMTGDDVREGLTAVVSVKVPEPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + + +  VE    +    +L +NP  A K+++  I  +  R   R+ RE+ R 
Sbjct: 231 QTKTKLGNSEVRGIVETLFGERMQIFLEENPSVARKIVDKCILAARAREAARRARELTRS 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKL DCS      +ELF+VEGDSAGGSAK  R+   QA+LPLRGKI+NV  
Sbjct: 291 KKMDVTSLPGKLTDCSSKDPERSELFLVEGDSAGGSAKMGRDPQTQAILPLRGKIINVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +K+  N++I  ++ A G      +     RY+K++I
Sbjct: 351 ARLDKVLANEEIRAIITACGTGIGDDFDLSKARYQKIVI 389


>gi|33146006|emb|CAD57647.2| DNA gyrase subunit B [Vibrio splendidus]
          Length = 404

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 155/414 (37%), Positives = 228/414 (55%), Gaps = 15/414 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +  G P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GT I F P  + F +   F    L +  +  ++L+  V       +E        
Sbjct: 61  T-DKTGTEIRFWPSEETFNN-IEFHYDILAERLRELSFLNSGVSIKLIDKRE------ED 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F + GG+  +++    N + I  +IF    E++     TVE A+ W +     I  
Sbjct: 113 KMDHFEYEGGILAFVEHLNTNETPIIQKIFHFDHERED--GITVEVAMQWNDGYQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GG H +G R ALTR +  + +      K   S   DD       I+SV + 
Sbjct: 171 FTNNIPQRDGGAHLAGFRGALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE+ + +    +L++NP EA  +   +I         R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQAVLPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAVLPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVD 547
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIM DADVD
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMADADVD 404


>gi|20387120|dbj|BAB91260.1| gyrase B [Streptomyces aspergilloides]
 gi|20387188|dbj|BAB91294.1| gyrase B [Streptomyces morookaensis]
 gi|308152545|dbj|BAJ22251.1| DNA gyrase subunit B [Streptomyces aspergilloides]
          Length = 399

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 140/401 (34%), Positives = 214/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V R    ++Q +  G P +PL+K E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKRDGFRWTQDYKLGAPTAPLQKNEAT-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  +    + ++ +  ++ G P    +
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLTISLTDERPDHVDEEGKPLNVRY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTI 322
           ++ GG+  ++      +  +          +      ++E A+ W  +  E + S+ NTI
Sbjct: 119 HYEGGISDFVTYLNSRKGELVHPTVISFEAEDKERMLSLEVAMQWNTQYSEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I +YA   +   ++  ++  DD+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGDDIREGLTAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+  + +    +L +NP EA  ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKVVHEQLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPEYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  N +I  L+ A G      +    LRY K+I+
Sbjct: 359 EKARIDKILQNTEIQALISAFGTGVHEDFDISKLRYHKIIL 399


>gi|313747311|dbj|BAJ41203.1| DNA gyrase subunit B [Bacillus sp. 6B254-3L]
          Length = 390

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 145/400 (36%), Positives = 216/400 (54%), Gaps = 14/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS E  V V R   I   KF RG  + PL       +  G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSIETDVQVHRDGHIHEIKFERGRTIQPLTIIGDT-DHNG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F+ DP IF +   ++   L    +  AYL+  +      ++          K+ ++
Sbjct: 60  TTTRFKADPTIFKETTVYEYDILAHRIRELAYLNRGITIIIMDER-----NEEIRKDVYH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K+Y++   EN+  +  E    K EK G    ++E A+ +       I S+ N I 
Sbjct: 115 YEGGIKSYVEQLNENKEPLH-EAIDLKGEKDGI---SIEIAMQYNSGFASTILSFANNIN 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHESG + ALTR I  YA      +    ++  +D+    V I+S+   +P+F G
Sbjct: 171 TYEGGTHESGFKTALTRVINDYARKNNLLKDSDANLSGEDVREGLVAIVSIKHPDPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NR 440
           QTKTKL + +      +   + F+ +L++NP  A  +++  +  S  R+  +K RE+  R
Sbjct: 231 QTKTKLGNSEVSSITNSLFSERFERFLLENPTVARTIVDKGLIASRARVAAKKAREMTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS       E++IVEGDSAGGSAK  R+R  QA+LPLRGKILNV 
Sbjct: 291 KSALEISSLPGKLADCSSRHPEECEVYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  ++I +N++I  ++ A+G     ++  E  RY K++I
Sbjct: 351 KARLDRILSNEEIRAMITAVGTGIGEEFNLEKARYHKIVI 390


>gi|159894990|gb|ABX09841.1| DNA gyrase beta subunit [Vibrio sp. idb.1.4]
 gi|159895004|gb|ABX09848.1| DNA gyrase beta subunit [Vibrio sp. GB-215]
          Length = 400

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 151/410 (36%), Positives = 231/410 (56%), Gaps = 15/410 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVVGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             ++ GT+I F P  + F +   F    L K  +  ++L+  V      ++E        
Sbjct: 61  T-DQTGTQIRFWPSAETFTN-IEFHYDILAKRLRELSFLNSGVSIKLVDEREAD------ 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F F GG++ ++     N++ I  +IF    E++      VE A+ W +     I  
Sbjct: 113 KSDHFMFEGGIQAFVDHLNTNKTPIIEKIFHFDFERED--GIAVEVAMQWNDGFQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV + 
Sbjct: 171 FTNNIPQRDGGTHLAGFRAALTRTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ +    +L++NP EA  +   +I+        R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTD 543
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTD
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTD 400


>gi|189909565|gb|ACE60642.1| DNA gyrase subunit B [Bacillus subtilis]
          Length = 385

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 148/393 (37%), Positives = 218/393 (55%), Gaps = 13/393 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG SVVNALS EL VTV R   I  Q + RG+P++ LE   +  +  GT   F
Sbjct: 1   VSGGLHGVGASVVNALSTELDVTVHRDGKIHRQTYKRGVPVTDLEIIGET-DHTGTTTHF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PDP+IF +   +D   L    +  A+L+  V       +E  E+        +++ GG+
Sbjct: 60  VPDPEIFSETTEYDYDLLANRVRELAFLTKGVNITIEDKREGQERKNE-----YHYEGGI 114

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K+Y++    ++ ++  E    + EK G    TVE A+ + +     I S+ N I T EGG
Sbjct: 115 KSYVEYLNRSKEVVHEEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNINTYEGG 171

Query: 329 THESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           THE+G +  LTR I  YA      +    ++  DD+      I+S+   +P+F GQTKTK
Sbjct: 172 THEAGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTK 231

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           L + +A+   +       + ++++NP  A K+++  +  +  R+  +K RE   RK+A+ 
Sbjct: 232 LGNSEARTITDTLFSTAMETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALE 291

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +
Sbjct: 292 ISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLD 351

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538
           KI +N ++  ++ ALG      +  E  RY KV
Sbjct: 352 KILSNNEVRSMITALGTGIGEDFNLEKARYHKV 384


>gi|86169577|gb|ABC87028.1| DNA gyrase subunit B [Weissella confusa]
          Length = 394

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 143/402 (35%), Positives = 217/402 (53%), Gaps = 14/402 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK--KEKVRNK 202
              Y++SGGLHGVG SVVNALS EL V V R    ++  F RG   + +     +     
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTELDVMVVRDGQGYAMDFERGHVKTTMHSAPVDNAPVS 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
           RGT + F PDP IF +   +D   L+   +  A+L+  ++   + ++        PE E 
Sbjct: 61  RGTIVHFLPDPDIFRETTTYDYKILMNRVRELAFLNKGLRISITDNR-----ADEPETES 115

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           F++ GG+K Y++    N+ +I  +    +  + G     VE ++ + ++    + S+ N 
Sbjct: 116 FHYEGGIKEYVRFLNVNKDVIFDDPIYVEGMENGI---EVEVSLQYTDDYHSNMLSFTNN 172

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEF 379
           I T EGGTHE+G + ALTR I  YA      +        DD+      I+SV    P+F
Sbjct: 173 IHTYEGGTHETGFKAALTRVINDYARKNGQLKENDDALSGDDVREGLTAIVSVKHPNPQF 232

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-V 438
            GQTKTKL + DA+  V+    + F+ ++++NP  A +++E  I   + R+  ++ RE  
Sbjct: 233 EGQTKTKLGNSDARTAVDRMFSETFNRFMMENPAVAKQIVEKGILAGKARMAAKRAREAT 292

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            +K+ +    LPGKLAD +      +ELFIVEGDSAGGSAKQ R R  QA+LP+RGKILN
Sbjct: 293 RKKSGLEIANLPGKLADNTSKDPEISELFIVEGDSAGGSAKQGRERLTQAILPIRGKILN 352

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           V  A  +KI  N++I  L  A+G    +++     +Y K+II
Sbjct: 353 VEKASLDKILANEEIRSLFTAMGTGFGNEFDVTKAKYHKLII 394


>gi|68445346|dbj|BAE03174.1| DNA gyrase subunit B [actinobacterium Aac-30]
          Length = 399

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 135/402 (33%), Positives = 212/402 (52%), Gaps = 9/402 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y++SGGLHGVG+SVVNALS  + V V     +++Q +  G+P S + K     +  G
Sbjct: 1   DGGYKVSGGLHGVGVSVVNALSTRVEVEVHTDGFVWNQVYKHGVPESEVCKGGPAED-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T   F  DP IF     +    L +  Q  A+L+  +    + ++ E  ++ G     ++
Sbjct: 60  TSTIFWADPDIFETTV-YTFETLSRRFQEMAFLNKGLTISLTDERPEFLDENGEQRSVKY 118

Query: 264 YFPGGLKTYLQTKLENR-SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           +  GG+  +++     +   +   +   + E K       E A+ W  +    I ++ N 
Sbjct: 119 HAEGGIADFVRHINARKGEPVHPNVIDFEGEDKD-RTLAAEIALQWNSQYSESIYTFANN 177

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I T  GGTHE G R ALT  I KYA   +   ++  ++  +D+      I+SV + EP+F
Sbjct: 178 INTHGGGTHEEGFRAALTTLINKYARDQKLLKEKDENLAGEDIREGLTTIVSVKLSEPQF 237

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN 439
            GQTK KL + +A+  V+  + +    +L +NP EA +++   I+ S  R+  RK RE+ 
Sbjct: 238 EGQTKDKLGNPEAKTFVQRLVYEKLGEWLEENPNEAREVIRKTIQASTARMAARKARELT 297

Query: 440 RKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
           R+  +     LPGKL+DC  N    TE+FIVEGDSAGGSA+  R+   QA+LP+RGKILN
Sbjct: 298 RRKGLLESSSLPGKLSDCQSNDPTKTEIFIVEGDSAGGSARSGRDPMTQAILPIRGKILN 357

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           V  A  +K+  N ++  L+ ALG      +    LRY K+I+
Sbjct: 358 VEKARIDKVLQNTEVQALISALGTGVHDDFDISRLRYHKIIL 399


>gi|22090954|dbj|BAC06768.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 390

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 146/401 (36%), Positives = 225/401 (56%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P +PL       +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F+
Sbjct: 60  TMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAAMTRTLNAYMDKEGCSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    R
Sbjct: 230 QTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|60459484|gb|AAX20078.1| DNA gyrase subunit B [Leptospira interrogans serovar Copenhageni]
          Length = 142

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 76/141 (53%), Positives = 106/141 (75%), Gaps = 1/141 (0%)

Query: 51  ILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVV 110
           ILEGLE VR RPGMYIG  DE  LH +  EV+DN++DE +AG+   I++S+  +  + V 
Sbjct: 1   ILEGLEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEIKISILPDNIVEVK 60

Query: 111 DNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELH 170
           DNGRGIPV+ HP     ST+E+++T LHAGGKF+N  Y++SGGLHGVG+SVVNALS+ L 
Sbjct: 61  DNGRGIPVDIHP-DKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYLE 119

Query: 171 VTVARQNTIFSQKFSRGIPLS 191
           V V ++  +++QK+ +G+P+S
Sbjct: 120 VEVHQKGKVYTQKYEKGVPVS 140


>gi|22090910|dbj|BAC06746.1| gyrase B [Salmonella enterica subsp. enterica serovar Chester]
          Length = 390

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 146/401 (36%), Positives = 225/401 (56%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P +PL       +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F+
Sbjct: 60  TMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    R
Sbjct: 230 QTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGNIIDAARAREAARRAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|85541251|gb|ABC70866.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
          Length = 392

 Score =  227 bits (578), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 146/402 (36%), Positives = 225/402 (55%), Gaps = 16/402 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F
Sbjct: 60  GTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           ++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I
Sbjct: 113 HYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNI 169

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+
Sbjct: 170 PQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFS 229

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    
Sbjct: 230 SQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTR 289

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL++VEGDSAGG AKQ RNR NQA+LPL+GKILNV
Sbjct: 290 RKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGFAKQGRNRKNQAILPLKGKILNV 349

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 391


>gi|19909703|dbj|BAB87047.1| DNA gyrase subunit B [Comamonas testosteroni]
          Length = 307

 Score =  227 bits (578), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 101/307 (32%), Positives = 155/307 (50%), Gaps = 33/307 (10%)

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPV-----ENHPKFPNKS 128
           LHHL  EV+DN++DE +AGY + I V++  +G L+V+DNGRGIP      + H   P +S
Sbjct: 1   LHHLVFEVVDNSIDEALAGYCDDILVTIHADGSLSVIDNGRGIPTRVKMDDKHE--PKRS 58

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
             EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV+R        FSRG 
Sbjct: 59  AAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSIWLKLTVSRDGVRHEIDFSRGF 118

Query: 189 PLSP-----------LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
             +              +     +KRGT++ F PD +IF +   F    L K  +  ++L
Sbjct: 119 VQNRLIEVVDGTEVSPMRVVGASDKRGTKVHFLPDQEIFKENFEFRYEILAKRLRELSFL 178

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V+     +++  E         F   GG+K +++     + ++    F  +  +   
Sbjct: 179 NNGVRIRLKDERDGKEDD-------FSGAGGVKGFVEFINGTKKVLHPTTFYAEGTRPAE 231

Query: 298 -------HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
                      VE A+ W +    ++  + N I   +GGTH +GLR A+TR I KY    
Sbjct: 232 TYGGIPGTEIGVEVAMQWNDSYAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIADN 291

Query: 350 QNKRAIS 356
           +  +   
Sbjct: 292 ELAKKAK 298


>gi|308153060|dbj|BAJ22119.1| DNA gyrase subunit B [Aneurinibacillus aneurinilyticus]
          Length = 389

 Score =  227 bits (578), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 155/400 (38%), Positives = 226/400 (56%), Gaps = 15/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG+SVVNALS +L + V R    + Q F+ G P+  L    +  +  G
Sbjct: 1   GEGYKVSGGLHGVGVSVVNALSKKLTIEVKRNGKRYIQHFAIGEPVDELTIAGEAED-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T++TF PDP+IF +   +D   L K  +  ++L+  V+     ++   E       EEF+
Sbjct: 60  TKVTFMPDPEIFTETIVYDYEILQKRLRELSFLNRGVRITLHDERIGKE-------EEFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+ ++++   +N+  +       + EK G     VE A+ + +     I SY N I 
Sbjct: 113 YEGGILSFVEYLNKNKEKLHEPPIFLEGEKDGLM---VEIALQYNDSFASNIYSYANNIH 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHESG + ALTR I  YA       ++  +++ DD+      I+SV I +P+F G
Sbjct: 170 THEGGTHESGFKSALTRVINDYARKHNLLKEKDDNLMGDDVREGLTAIISVKIPDPQFEG 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + +A+   E+   + F  YL ++P EA +++E  +  S  R   RK RE   R
Sbjct: 230 QTKTKLGNSEARGITESLFAEHFFIYLEEHPQEAKRIVEKSLTASRAREAARKARELTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADCS   A  +EL+IVEGDSAGGSAKQ R+R  QA+LPL+GKILNV 
Sbjct: 290 KNALEFSSLPGKLADCSSRDASISELYIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +KI +N +I  ++ ALG      +     RY ++II
Sbjct: 350 KARLDKILSNAEIRAIITALGTGIGEDFDIAKARYHQIII 389


>gi|126035210|gb|ABN72358.1| gyrase B subunit [Escherichia coli]
          Length = 391

 Score =  227 bits (578), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 146/402 (36%), Positives = 226/402 (56%), Gaps = 16/402 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL    +     G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F+
Sbjct: 60  TMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    R
Sbjct: 230 QTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIM 541
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIM
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIM 391


>gi|60459480|gb|AAX20076.1| DNA gyrase subunit B [Leptospira interrogans serovar Canicola]
          Length = 142

 Score =  227 bits (578), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 78/141 (55%), Positives = 106/141 (75%), Gaps = 1/141 (0%)

Query: 51  ILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVV 110
           ILEGLE VR RPGMYIG  DE  LH +  EV+DN++DE +AG+   I++S+  +  + V 
Sbjct: 1   ILEGLEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEIKISILPDNIVEVK 60

Query: 111 DNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELH 170
           DNGRGIPV+ HP     ST+E+++T LHAGGKF+N  Y++SGGLHGVG+SVVNALS+ L 
Sbjct: 61  DNGRGIPVDIHP-DKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYLE 119

Query: 171 VTVARQNTIFSQKFSRGIPLS 191
           V V ++  +++QK+ RGIP+S
Sbjct: 120 VEVHQKGKVYTQKYERGIPVS 140


>gi|194477388|gb|ACF74791.1| DNA gyrase subunit B [Halorubrum coriense]
          Length = 398

 Score =  227 bits (578), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 155/409 (37%), Positives = 221/409 (54%), Gaps = 18/409 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP---LEKKEKVRNKRGTR 206
           +SGGLHGVG+SVVNALS+ L V V R   +F  +F+RG P        +        GT 
Sbjct: 1   VSGGLHGVGVSVVNALSERLEVEVTRDGGVFRHRFARGEPAEDGFERVRDAGPDESTGTE 60

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F PD +IF     F  + L    +  A+L+  V+     D++          E F + 
Sbjct: 61  IRFWPDEEIFETT-DFQTSTLANRLRELAFLNSGVEIRLVDDRDDT-------AETFRYD 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTILTD 325
           GG++ +++   E RS I  ++   + E  G H   VE A+   EE    + ++ N I T 
Sbjct: 113 GGIREFVEYLNETRSPIHEDVIYFEGESDGVH---VEVAMQATEELQGSVHAFANNINTR 169

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQT 383
           EGGTH +G + ALTR +  YA           ++  +D+      ++SV   +P+F GQT
Sbjct: 170 EGGTHLTGFKTALTRTVNDYANEHGLVDDLDANLKGEDVREGLTAVVSVKHPDPQFEGQT 229

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKT 442
           KTKL + + +  VE+A  +    +  +NP  A K++    E +  R   +K  E   RK+
Sbjct: 230 KTKLGNSEVRGVVESATHEKLGTFFEENPDTAEKVVHKAAEAARARKAAKKAEELTRRKS 289

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC        ELF+VEGDSAGGSAKQ RNR NQA+LPL+GKILNV   
Sbjct: 290 ALESTALPGKLADCQTRDPEEAELFVVEGDSAGGSAKQGRNRENQAILPLKGKILNVEKH 349

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHI 551
             ++I  N +I  L+ A+G     ++  +D+RY K+I+MTDADVDGAHI
Sbjct: 350 RLDRILENDEIRALITAIGAGIGEEFDIDDVRYNKIILMTDADVDGAHI 398


>gi|88824751|gb|ABD52421.1| gyrase B [Escherichia coli]
          Length = 392

 Score =  227 bits (578), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 145/403 (35%), Positives = 225/403 (55%), Gaps = 16/403 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL    +     G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F+
Sbjct: 60  TMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R A+ R +  Y +      K  +S   DD     + ++SV + + +F+ 
Sbjct: 170 QRDGGTHLAGFRAAMARTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDXKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    R
Sbjct: 230 QTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMT 392


>gi|4996802|dbj|BAA78446.1| subunit B protein of DNA gyrase [bacterium rM6]
          Length = 297

 Score =  227 bits (578), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 103/304 (33%), Positives = 155/304 (50%), Gaps = 31/304 (10%)

Query: 73  ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKST 129
            LHHL  EV+DN++DE +AGY + I V++  +G L+V+DNGRGIP          P +S 
Sbjct: 1   GLHHLVFEVVDNSIDEALAGYCDDILVTIHADGSLSVIDNGRGIPTGVKMDDKHEPKRSA 60

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV+R    +   FSRG  
Sbjct: 61  AEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSVWLKLTVSRDGQRYEIDFSRGHV 120

Query: 190 ------------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
                       +SP+    +  +KRGT++ F PD +IF +   F    L K  +  ++L
Sbjct: 121 QNRLIEVVDGAEVSPMRVVGE-SDKRGTKVHFLPDQEIFKENFDFRYEILAKRLRELSFL 179

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V+     +++  E         F   GG+K +++     + ++    F     +   
Sbjct: 180 NNGVRIRLKDERDGKEDD-------FSGAGGVKGFVEFINGTKKVLHPTAFHAMGSRPAE 232

Query: 298 -------HRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
                      VE ++ W +   E    + N I   +GGTH +GLR A+TR I KY E  
Sbjct: 233 TYGGIPGTEIGVEISMQWNDSYGEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIEQN 292

Query: 350 QNKR 353
              +
Sbjct: 293 DLAK 296


>gi|33145996|emb|CAD57638.2| DNA gyrase subunit B [Vibrio splendidus]
          Length = 403

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 152/412 (36%), Positives = 227/412 (55%), Gaps = 15/412 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +  G P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +  GT I F P  + F +   F    L K  +  ++L+  V       +E        
Sbjct: 61  T-DNTGTEIRFWPSEETFNN-IEFHYDILAKRLRELSFLNSGVSIKLIDKRE------ED 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F + GG++ +++    N++ I  +I     E++     TVE A+ W +     I  
Sbjct: 113 KMDHFEYEGGIQAFVEHLNTNKTPIIQKILHFDHERED--GITVEVAMQWNDGYQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GG H +G R ALTR +  + +      K   S   DD       I+SV + 
Sbjct: 171 FTNNIPQRDGGAHLAGFRGALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE+ + +    +L++NP EA  +   +I         R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDAD
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDAD 402


>gi|121309742|dbj|BAF44193.1| DNA gyrase subunit B [Leptospira kmetyi serovar Malaysia]
          Length = 140

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 77/141 (54%), Positives = 105/141 (74%), Gaps = 1/141 (0%)

Query: 51  ILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVV 110
           ILEGLE VR RPGMYIG  DE  LH +  EV+DN++DE +AG+   I++S+  +  + V 
Sbjct: 1   ILEGLEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEIKISILPDNIIEVR 60

Query: 111 DNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELH 170
           DNGRGIPV+ HP     ST+E+++T LHAGGKF+N  Y++SGGLHGVG+SVVNALS+ L 
Sbjct: 61  DNGRGIPVDIHP-DKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYLE 119

Query: 171 VTVARQNTIFSQKFSRGIPLS 191
           V V ++   ++QK+ +GIP+S
Sbjct: 120 VEVHQKGKCYTQKYEKGIPVS 140


>gi|211927051|dbj|BAG82778.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 390

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 144/401 (35%), Positives = 226/401 (56%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L + + R+  +  Q +  G+P +PL    +     G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIRREGKVHQQTYVHGVPQAPLAVTGET-ELTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T++ F P  + F +   F+   L K  +  ++L+  V       ++  E       + F+
Sbjct: 60  TQVRFWPSHETFTNVVEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    R
Sbjct: 230 QTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPAHSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|308153150|dbj|BAJ22164.1| DNA gyrase subunit B [Thermocrispum municipale]
          Length = 400

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 139/406 (34%), Positives = 220/406 (54%), Gaps = 16/406 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVG+SVVNALS  L V + R   I++QK+    P    +  E   ++ G
Sbjct: 1   SKSYAVSGGLHGVGVSVVNALSKRLEVEIHRGGVIWTQKYVNSEPGPLQK--EGTTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------ 258
           T ++F PD  IF     F+   + +  Q  A+L+  +      +++  E           
Sbjct: 59  TILSFWPDENIFETTY-FNTETVARRLQEMAFLNKGLTMVLRDERQPEEAEDAEGQQAAL 117

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           ++  +Y+PGGL+ +++    +R  +  ++ + + +  G     VE A+ W     P + +
Sbjct: 118 KERTYYYPGGLEDFVKHINASRDTVHDKVISFEAKGDG---LQVEVAMQWNTGYTPSVYT 174

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + NTI T EGGTHE G R ALTR +  YA   +   ++  ++  DD+      I+S+ + 
Sbjct: 175 FANTINTHEGGTHEEGFRAALTRVVNAYARDKKLLKEKDANLTGDDVREGLAAIVSIKLA 234

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           EP+F GQTKTKL + +A+  V+    +    +  +NP EA  ++   +  ++ RL  RK 
Sbjct: 235 EPQFEGQTKTKLGNSEAKSFVQTTTNEWLSDWFERNPSEAKLIISKAVSSAQARLAARKA 294

Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE V RK A+    LPGKL DC        EL+IVEGDSAGGSAK+ R+   QA+LP+RG
Sbjct: 295 RELVRRKGALDIGGLPGKLKDCRSTKPEECELYIVEGDSAGGSAKEGRDSMYQAILPIRG 354

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           KI+NV  A  +K+  N ++  L+ ALG     ++    LRY K+++
Sbjct: 355 KIINVEKARIDKVLKNNEVQSLITALGTGIHEEFDITKLRYHKIVL 400


>gi|156901530|gb|ABU96755.1| GyrB [Salmonella enterica subsp. houtenae]
 gi|156901532|gb|ABU96756.1| GyrB [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|156901534|gb|ABU96757.1| GyrB [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|156901536|gb|ABU96758.1| GyrB [Salmonella enterica subsp. salamae]
 gi|156901544|gb|ABU96762.1| GyrB [Salmonella enterica subsp. indica]
          Length = 391

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 146/401 (36%), Positives = 225/401 (56%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P +PL       +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F+
Sbjct: 60  TMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    R
Sbjct: 230 QTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|22090928|dbj|BAC06755.1| gyrase B [Salmonella enterica subsp. enterica serovar Oranienburg]
 gi|22090930|dbj|BAC06756.1| gyrase B [Salmonella enterica subsp. enterica serovar Oranienburg]
          Length = 390

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 145/401 (36%), Positives = 224/401 (55%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P +PL       +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F+
Sbjct: 60  TMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R    + R    R
Sbjct: 230 QTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAAGRAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|22090912|dbj|BAC06747.1| gyrase B [Salmonella enterica subsp. enterica serovar Newport]
 gi|22090914|dbj|BAC06748.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|22090916|dbj|BAC06749.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|22090918|dbj|BAC06750.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|22090920|dbj|BAC06751.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|22090922|dbj|BAC06752.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|22090924|dbj|BAC06753.1| gyrase B [Salmonella enterica subsp. enterica serovar Hadar]
 gi|22090926|dbj|BAC06754.1| gyrase B [Salmonella enterica subsp. enterica serovar Newport]
 gi|22090938|dbj|BAC06760.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi B]
 gi|22090940|dbj|BAC06761.1| gyrase B [Salmonella enterica subsp. enterica serovar Thompson]
 gi|22090942|dbj|BAC06762.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi]
 gi|22090944|dbj|BAC06763.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi]
 gi|22090946|dbj|BAC06764.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi]
 gi|22090948|dbj|BAC06765.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi]
 gi|22090950|dbj|BAC06766.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi]
 gi|22090952|dbj|BAC06767.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi]
 gi|22090956|dbj|BAC06769.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|22090958|dbj|BAC06770.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 390

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 146/401 (36%), Positives = 225/401 (56%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P +PL       +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F+
Sbjct: 60  TMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    R
Sbjct: 230 QTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|328349743|emb|CBY89179.1| GyrB protein [Flavobacterium sp. R-38352]
          Length = 404

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 155/407 (38%), Positives = 227/407 (55%), Gaps = 10/407 (2%)

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA-RQNTIFSQKFSRGIPLS 191
           ++T + AGGKFD  +Y++SGGLHGVG+SVVNALS+ L  TV      ++ Q++ +G  L 
Sbjct: 1   VMTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGKVYEQEYEKGKALY 60

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
           P+++  +    RGT +TF PD  IF     F    L    +  +YL+  +   ++  +E 
Sbjct: 61  PVKQIGETTK-RGTIVTFYPDNTIFTQTTEFSYDTLSARMRELSYLNKGITITFTDKRE- 118

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
            +K G    E F+   GLK Y++    NR  I + + +  ++K       VE A+ +   
Sbjct: 119 KDKDGNFVSEVFHSTEGLKEYIRYLDSNREPIIAHVISMDSDK---GEIPVEVALIYNTS 175

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVG 368
               I SY N I T EGGTH  G R  LTR +KKYA+ +    K    +  DD       
Sbjct: 176 YTENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADSSGMLDKLKFEVSGDDFREGLTA 235

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           I+SV + EP+F GQTKTKL + +    V  A+ D  + YL +NP +A  +++ VI  ++ 
Sbjct: 236 IISVKVAEPQFEGQTKTKLGNREVVSPVSQAVGDMIESYLEENPNDARIIVQKVILAAQA 295

Query: 429 RLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
           R   +K RE+  RKT +    LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ Q
Sbjct: 296 RHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVFLVEGDSAGGTAKQGRDRAFQ 355

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
           A+LPLRGKILNV  A   K+  N++I ++  ALG    +    + L 
Sbjct: 356 AILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTIGTAEDSKALN 402


>gi|33590324|gb|AAQ22702.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. akhurstii]
          Length = 389

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 145/400 (36%), Positives = 223/400 (55%), Gaps = 16/400 (4%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS++L + + R   +  Q +  G+P SPL+   +   + 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGET-EQT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GTR+ F P    F +   F    L K  +  ++L+  V       +   E       + F
Sbjct: 60  GTRVRFWPSMDTFRNNTEFQHDILAKRLRELSFLNSGVSIRLIDKRTNTE-------DHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           ++ GG+K +++   +N++ I   +F   TEK G     VE ++ W +     I  + N I
Sbjct: 113 HYEGGIKAFVEFLNKNKTPIHPNVFYFSTEKDGI---GVEISMQWNDGFQENIYCFTNNI 169

Query: 323 LTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH  G R A+TR +  Y +      K  +S   DD     V ++SV + +P+F+
Sbjct: 170 PQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFS 229

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    
Sbjct: 230 SQTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVSKIIDAARAREAARKAREMTR 289

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 290 RKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 349

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +
Sbjct: 350 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSI 389


>gi|60459500|gb|AAX20086.1| DNA gyrase subunit B [Leptospira interrogans serovar Kremastos]
          Length = 143

 Score =  226 bits (577), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 77/141 (54%), Positives = 106/141 (75%), Gaps = 1/141 (0%)

Query: 51  ILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVV 110
           ILEGLE VR RPGMYIG  DE  LH +  EV+DN++DE +AG+   I++S+  +  + V 
Sbjct: 1   ILEGLEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEIKISILPDNIVEVK 60

Query: 111 DNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELH 170
           DNGRGIPV+ HP     ST+E+++T LHAGGKF+N  Y++SGGLHGVG+SVVNALS+ L 
Sbjct: 61  DNGRGIPVDIHP-DKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYLE 119

Query: 171 VTVARQNTIFSQKFSRGIPLS 191
           V V ++  +++QK+ +GIP+S
Sbjct: 120 VEVHQKGKVYTQKYEKGIPVS 140


>gi|35210343|dbj|BAC92683.1| gyrase B subunit [Alicyclobacillus cycloheptanicus]
          Length = 389

 Score =  226 bits (577), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 142/400 (35%), Positives = 218/400 (54%), Gaps = 15/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS  L V V R   I+ Q++ RG+P   L+   K  +  G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTWLKVEVHRDGNIYVQEYERGVPKYDLKIVGKT-DHTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF PDP+IF +   F +  L    +  A+L+  ++  +  ++E        +   + 
Sbjct: 60  TSVTFLPDPEIFTETTEFQSDILQGRLRELAFLNAGLEIIYEDERE-------DKTYTYL 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++   +N+ L+         +K      TVE A+ + +     + S+ N I 
Sbjct: 113 YSGGVAAFVEYLNKNKDLLHPNPVYVTGKKD---EVTVEVALQYNDGYATTLLSFANNIN 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHESG + ALTR I  Y   T    +   ++  +D+      ++SV + EP+F G
Sbjct: 170 THEGGTHESGFKSALTRVINDYGRKTNIIKENENNLSGEDVREGLTAVVSVKVPEPQFEG 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + + +  VE    +    +  +NP  A +++E  +  +  R   RK RE   R
Sbjct: 230 QTKTKLGNSEVRGIVEGLFGEKLQTFFEENPSVAKRIVEKSLTAARAREAARKARELTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADCS   A  +EL+IVEGDSAGGSAK  R+R+ QA+LPLRGKI+NV 
Sbjct: 290 KNALEVSSLPGKLADCSTKDASISELYIVEGDSAGGSAKGGRDRNFQAILPLRGKIINVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +K+ +N+++  ++ A+G      +     RY K++I
Sbjct: 350 KARLDKVLSNEEVRAIITAIGTGIGDDFDISKARYHKIVI 389


>gi|88824753|gb|ABD52422.1| gyrase B [Escherichia coli]
          Length = 392

 Score =  226 bits (577), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 142/403 (35%), Positives = 217/403 (53%), Gaps = 16/403 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNA S +L + + R+  I  Q +  G+P +PL    +     G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNAPSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F+
Sbjct: 60  TMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R A+TR +  Y +      K  +S   +      + ++SV   +P F+ 
Sbjct: 170 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGEHAREGLIAVVSVKXPBPXFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           Q K KLVS + +  VE         YL +NP +   ++  +I  +  R   R+ R    R
Sbjct: 230 QXKXKLVSSEVKSXVEQXXNXLLXEYLXENPTDXKIVVGKIIXAARAREAARRAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMT 392


>gi|33590342|gb|AAQ22711.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. laumondii]
          Length = 389

 Score =  226 bits (577), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 146/400 (36%), Positives = 224/400 (56%), Gaps = 16/400 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS++L + + R   +  Q +  G+P SPL+   +   + G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGET-EQTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           TR+ F P    F D   F    L K  +  ++L+  V       +   E       + F+
Sbjct: 60  TRVRFWPSMDTFRDNTEFQHDILAKRLRELSFLNSGVSIRLIDKRTNIE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   +F   TEK G     VE ++ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEFLNKNKTPIHPNVFYFSTEKDGI---GVEISMQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH  G R A+TR + +Y +      K  +S   DD     V ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLVGFRTAMTRTLNRYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    R
Sbjct: 230 QTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVSKIIDAARAREAARKAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSII 389


>gi|19909701|dbj|BAB87046.1| DNA gyrase subunit B [Microcystis ichthyoblabe TAC48]
          Length = 333

 Score =  226 bits (577), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 113/326 (34%), Positives = 172/326 (52%), Gaps = 9/326 (2%)

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G ++V D+GRGIP + HP    KS LE +LT LHAGGKF +  Y++SGGLHGVGISVVN
Sbjct: 1   DGSVSVTDDGRGIPTDVHP-TTGKSALETVLTILHAGGKFGSGGYKVSGGLHGVGISVVN 59

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS  + VTV R + + +Q++ RGIP++ L        K GTR+ F PD +IF     FD
Sbjct: 60  ALSAWVDVTVWRDHKVHTQRYERGIPVTELVSSPSQEEKTGTRVNFLPDTEIFSQGIEFD 119

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
            + L    +  AYL+  VK  +S  +        P  E + + GG+K Y+      +  +
Sbjct: 120 YSTLSGRLRELAYLNAGVKITFSDYR-----PEEPHIETYCYEGGIKEYVAYMCREKETL 174

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIK 343
             +I     EK G     V +       +  I  + N I T +GGTH  GL+  LTR + 
Sbjct: 175 HKDIIYVSGEKNGI-NIEVAFQWCIDAYSDNILGFANNIRTIDGGTHLEGLKAVLTRTLN 233

Query: 344 K--YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
                     +   ++  +++      ++SV + EPEF GQTKTKL + + +  V++ + 
Sbjct: 234 NVVCKRNKIKENEPNLAGENVREGLTAVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVG 293

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSE 427
           +  + YL QNP  A  ++E  ++  +
Sbjct: 294 ETLNEYLEQNPQVADTIIEKAVQAYK 319


>gi|68445336|dbj|BAE03169.1| DNA gyrase subunit B [actinobacterium Aac-100]
 gi|68445350|dbj|BAE03176.1| DNA gyrase subunit B [actinobacterium Aac-35]
          Length = 399

 Score =  226 bits (577), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 135/401 (33%), Positives = 214/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG SVVNALS  L V V  +  +++Q + RG+P +PL K  +  ++ G
Sbjct: 1   GGGYAVSGGLHGVGSSVVNALSTRLTVAVKTEGFLWTQAYLRGVPTAPLHK-GEAVSETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D +IF     ++   L +  Q  A+L+  V      ++ E  +  G P    +
Sbjct: 60  TTVTFWADDEIFETTV-YNFETLSRRFQEMAFLNRGVSIELVDERPEYKDDEGNPRSVHY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG+  +++     +  +          +    + + E A+ W  +    + ++ N I
Sbjct: 119 KYDGGISDFVKHLNAAKGELVHPQVIEFGAEDKERKISAEVALQWNNQYSESVYTFANVI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
            T +GGTHE G R ALT  + +YA+  Q   ++  ++  +D+    V I+SV + EP+F 
Sbjct: 179 QTPDGGTHEEGFRSALTNVVNRYAKDKQLLKEKDDNLSGEDIREGLVAIVSVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTK KL + +A+  V+    +    +  +NP EA  ++   I+ S  RL  RK RE+ R
Sbjct: 239 GQTKAKLGNTEARTFVQKITYESMADWFDRNPNEAKDIVRKAIQASFARLAARKARELTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +   + LPGKLADC        E+F+VEGDSAGGSAKQ R+   QA++P+RGKILNV
Sbjct: 299 RKGLLESMSLPGKLADCQSTNPKECEIFVVEGDSAGGSAKQGRDPRTQAIMPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +K+  N ++  L+ ALG      +    LRY K+++
Sbjct: 359 EKARIDKVLQNTEVQGLISALGTGIHDDFDIGKLRYHKIVL 399


>gi|35210341|dbj|BAC92682.1| gyrase B subunit [Alicyclobacillus herbarius]
          Length = 389

 Score =  226 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 140/400 (35%), Positives = 218/400 (54%), Gaps = 15/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS+ L V V R   +  Q++ RG+PL  L+      +  G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSEWLRVEVHRDGKVHVQEYERGVPLYDLKVVG-TTDHTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T ++FRPDP+IF +   F +  L    +  A+L+  ++  ++ ++E        +   + 
Sbjct: 60  TIVSFRPDPEIFTETTEFQSDVLQGRLRELAFLNAGLEIVFNDERE-------GKSRTYC 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTIL 323
           + GG+  ++    +++ ++  +    K  +      +VE A+ + +        + N I 
Sbjct: 113 YSGGVAEFVLFLNKSKEVLHPDPVFVKGIRDDV---SVEIALQYNDGYAATLYSFANNIH 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAG 381
           T EGG+HE+G + ALTR I  YA      +    ++  DD+      I+SV + EP+F G
Sbjct: 170 THEGGSHEAGFKTALTRVINDYARKMNLLKENESNLTGDDVREGLTAIVSVKVPEPQFEG 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNR 440
           QTKTKL + + +  V+    D F  +L QNP  A K+++  V         R+ +    R
Sbjct: 230 QTKTKLGNSEVRGIVDGLFADKFYAFLEQNPSVARKIVDKSVTAARAREAARKARELTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS   A  +EL+IVEGDSAGGSAKQ R+R+ QA+LPLRGKI+NV 
Sbjct: 290 KSALEVSSLPGKLADCSSKDASISELYIVEGDSAGGSAKQGRDRNFQAILPLRGKIINVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +KI +N +I  ++ A+G      +     RY K++I
Sbjct: 350 KARLDKILSNTEIRSIITAIGTGIGDDFDLSKARYHKIVI 389


>gi|156901538|gb|ABU96759.1| GyrB [Salmonella bongori]
          Length = 391

 Score =  226 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 146/401 (36%), Positives = 225/401 (56%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P +PL       +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F+
Sbjct: 60  TMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    R
Sbjct: 230 QTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|109287852|dbj|BAE96347.1| DNA gyrase subunit B [Photorhabdus sp. CbKj163]
 gi|109287854|dbj|BAE96348.1| DNA gyrase subunit B [Photorhabdus sp. OnIr40]
          Length = 391

 Score =  226 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 147/402 (36%), Positives = 225/402 (55%), Gaps = 16/402 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS++L + + R   +  Q +  G+P SPL+   +   + 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKIVGET-EQT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GTR+ F P    F +   F    L K  +  ++L+  V       +   E       + F
Sbjct: 60  GTRVRFWPSMDTFRNNTEFQHDILAKRLRELSFLNSGVSIRLIDKRTNTE-------DHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           ++ GG+K +++   +N++ I   +F   TEK G     VE ++ W +     I  + N I
Sbjct: 113 HYEGGIKAFVEFLNKNKTPIHPNVFYFSTEKDGI---GVEISMQWNDGFQENIYCFTNNI 169

Query: 323 LTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH  G R A+TR +  Y +      K  +S   DD     V ++SV + +P+F+
Sbjct: 170 PQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFS 229

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    
Sbjct: 230 SQTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVSKIIDAARAREAARKAREMTR 289

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 290 RKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 349

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 391


>gi|68062299|ref|XP_673155.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56490797|emb|CAI02100.1| hypothetical protein PB300551.00.0 [Plasmodium berghei]
          Length = 426

 Score =  226 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 87/411 (21%), Positives = 170/411 (41%), Gaps = 18/411 (4%)

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALT 339
           S  ++  +  +  K    +   E  I+  +    +  S+ N+I T +GGTH S +   L 
Sbjct: 2   SNFNNNKYEEEIVKIHEKQHRWEIVISKTDGSQFQQVSFVNSICTTKGGTHVSYIVDQLL 61

Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
             + K     +NK  + I S  +       ++  I  P F  QTK  L +  ++   +  
Sbjct: 62  NSLSK-KANAKNKGGMEIKSGHIRNHLWVFVNCLIVNPTFDSQTKETLTTKQSKFGSKCI 120

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
           L D   + ++++ I +  LL    +   E  ++ K      +  I  +       D    
Sbjct: 121 LTDKTINNVLKSSILSNILLWAQAKAQVELRKKMKAGSSKARERIIGIPKLEDANDAGSK 180

Query: 460 IAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            +    L + EGDSA  S     +   R    V PL+GK+LNV  A  +++ +N++I ++
Sbjct: 181 YSQECTLILTEGDSAKTSCLAGLSIVGRDRYGVFPLKGKLLNVRDASFKQLMDNKEIQNI 240

Query: 517 VQALGCRTRSQYREE--DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ-KHLF 573
            + +G     + +++   LRY  ++IMTD D DG+HI  LL+   ++    L++    L 
Sbjct: 241 FKIMGLDITDKNKQDIKGLRYGSLMIMTDQDYDGSHIKGLLINMIHKFWPSLLKHKGFLC 300

Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
               P+ ++ +G + +        ++  E          +I  +KGLG     + K+   
Sbjct: 301 EFVTPIVKVQKGNQELSFFTIAEYEQWKE---NTNLVGWKIKYYKGLGTSTDKEFKQYFS 357

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER--ASFID 682
           D     +  V +            + +K    + ++R  ++Q     S++D
Sbjct: 358 DIQSHKI--VFLWTGDRDGDSIDMAFSK---KRIEDRKLWLQNFILGSYVD 403


>gi|60459502|gb|AAX20087.1| DNA gyrase subunit B [Leptospira interrogans serovar Szwajizak]
          Length = 142

 Score =  226 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 77/142 (54%), Positives = 107/142 (75%), Gaps = 1/142 (0%)

Query: 50  RILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTV 109
           +ILEGLE VR RPGMYIG  DE  LH +  EV+DN++DE +AG+   I++S+  +  + V
Sbjct: 1   KILEGLEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEIKISILPDNIVEV 60

Query: 110 VDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDEL 169
            DNGRGIPV+ HP     ST+E+++T LHAGGKF+N  Y++SGGLHGVG+SVVNALS+ L
Sbjct: 61  KDNGRGIPVDIHP-DKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYL 119

Query: 170 HVTVARQNTIFSQKFSRGIPLS 191
            V V ++  +++QK+ +GIP+S
Sbjct: 120 EVEVHQKGKVYTQKYEKGIPVS 141


>gi|222873731|gb|EEF10862.1| predicted protein [Populus trichocarpa]
          Length = 361

 Score =  226 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 133/368 (36%), Positives = 199/368 (54%), Gaps = 29/368 (7%)

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT------- 297
              +++  E         F   GG+  ++Q    N+ ++    F     +          
Sbjct: 1   LKDERDGREDD-------FSGAGGVMGFVQFINANKKVLHPTAFHANGTRPAESYGGIPG 53

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               VE A+ W +    ++  + N I   +GGTH +GLR A+TR I KY E  +   K  
Sbjct: 54  TEIGVEVAMQWNDSYAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIEQNELAKKAK 113

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           + +  DD+      +LSV + EP+F+ QTK KLVS + +  VE+ +      YL + P +
Sbjct: 114 VEVSGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVAKALTDYLEEKPND 173

Query: 415 ATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  L   +++ +  R   RK RE+ R+   +  + LPGKLADC +      E++IVEGDS
Sbjct: 174 AKILCSKIVDAARAREAARKAREMTRRKGVLDGMGLPGKLADCQEKDPALCEIYIVEGDS 233

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT--------- 524
           AGGSAKQ R+R  QA+LPLRGKILNV  A  EK+  + +I+ L+ ALG            
Sbjct: 234 AGGSAKQGRDRKFQAILPLRGKILNVEKARYEKLLTSNEIVTLITALGTGIGKATAESGK 293

Query: 525 --RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI 582
                +    LRY ++IIMTDADVDGAHI +LLLTFFY++M DL+E+ H+++  PPL+++
Sbjct: 294 SGSDDFDPNKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPDLVERGHIYIAQPPLYKV 353

Query: 583 TQGTKSVY 590
             G + +Y
Sbjct: 354 KNGKEELY 361


>gi|159146590|gb|ABW90739.1| DNA gyrase beta subunit [Vibrio chagasii]
          Length = 401

 Score =  226 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 153/411 (37%), Positives = 229/411 (55%), Gaps = 15/411 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +  G P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYHHGEPQAPLAVIGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             ++ GT I F P  + F +   F    L K  +  ++L+  V      ++E        
Sbjct: 61  T-DQTGTEIRFWPSEETFSNVL-FHYDILAKRLRELSFLNSGVSIKLIDERE------ED 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F F GG++ ++     N++ I  +IF    E++     TVE A+ W +     I  
Sbjct: 113 KSDHFMFEGGIQAFVDHLNTNKTPIIQKIFHFDHERED--GITVEVAMQWNDGYQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV + 
Sbjct: 171 FTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE A+ +    +L++NP EA  +   +I         R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVEQAMGEKLSEFLIENPTEAKTVCTKIIDAARARDAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDA
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDA 401


>gi|26334167|dbj|BAC30801.1| unnamed protein product [Mus musculus]
          Length = 507

 Score =  226 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 100/517 (19%), Positives = 179/517 (34%), Gaps = 58/517 (11%)

Query: 19  SSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE------- 71
           ++ K ++      + +    S    Y          LE + +RP  YIG  +        
Sbjct: 18  NATKKEELETANKNDSTKKLSVERVYQKK-----TQLEHILLRPDTYIGSVEPLTQLMWV 72

Query: 72  ---------------KALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN-GFLTVVDNGR 114
                            L+ +F E++ NA D          I+VS+D     +++ +NG+
Sbjct: 73  YDEDVGMNCREVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGK 132

Query: 115 GIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVT-- 172
           GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V   
Sbjct: 133 GIPVVEH-KVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETA 191

Query: 173 VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKM 230
                  F Q +   +  +   K +    +  T ITF+PD              A + + 
Sbjct: 192 CKEYKHSFRQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKDIVALMTRR 251

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
               A     VK  ++  K                  G ++Y+   ++++   +      
Sbjct: 252 AYDLAGSCKGVKVMFNGKKLPV--------------NGFRSYVDLYVKDKLDETGVALKV 297

Query: 291 KTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
             E         +  +   E+  +  S+ N+I T +GG H   +   +   + +     +
Sbjct: 298 IHEL---ANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVSKLIE-VVKKK 353

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
           NK  +S+    +       ++  I  P F  QTK  +         +  L + F      
Sbjct: 354 NKAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKCQLSEKFFK-AAS 412

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           N      +L WV  +++   +  K+    + + I+ +       D     +    L + E
Sbjct: 413 NCGIVESILNWVKFKAQ--TQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLILTE 470

Query: 471 GDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGS 504
           GDSA   A        R    V PLRGKILNV  A  
Sbjct: 471 GDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASH 507


>gi|159146558|gb|ABW90723.1| DNA gyrase beta subunit [Vibrio chagasii]
          Length = 401

 Score =  226 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 154/411 (37%), Positives = 229/411 (55%), Gaps = 15/411 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +  G P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGQIHTQTYHHGEPQAPLAVIGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GT I F P  + F +   F    L K  +  ++L+  V      ++E        
Sbjct: 61  T-DKTGTEIRFWPSEETFSNVL-FHYDILAKRLRELSFLNSGVSIKLIDERE------ED 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F F GG++ +++    N++ I  +IF    E+      TVE A+ W +     I  
Sbjct: 113 KSDHFMFEGGIQAFVEHLNTNKTPIIQKIFHFDNERDD--GITVEVAMQWNDGYQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV + 
Sbjct: 171 FTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE A+ +    +L++NP EA  +   +I         R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVEQAMGEKLSEFLIENPTEAKTVCTKIIDAARARDAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDA
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDA 401


>gi|126035302|gb|ABN72404.1| gyrase B subunit [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 390

 Score =  226 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 146/401 (36%), Positives = 225/401 (56%), Gaps = 16/401 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F
Sbjct: 60  GTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           ++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I
Sbjct: 113 HYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNI 169

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+
Sbjct: 170 PQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFS 229

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    
Sbjct: 230 SQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTR 289

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 290 RKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 349

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 350 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSII 390


>gi|156901540|gb|ABU96760.1| GyrB [Salmonella choleraesuis]
 gi|156901542|gb|ABU96761.1| GyrB [Salmonella enterica subsp. diarizonae]
          Length = 391

 Score =  226 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 145/401 (36%), Positives = 224/401 (55%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L + + R      Q +  G+P +PL       +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKTHRQIYEHGVPQAPLAVTGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F+
Sbjct: 60  TMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    R
Sbjct: 230 QTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|19909699|dbj|BAB87045.1| DNA gyrase subunit B [Microcystis viridis NIES-103]
          Length = 332

 Score =  226 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 114/326 (34%), Positives = 173/326 (53%), Gaps = 9/326 (2%)

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G ++V D+GRGIP + HP    KS LE +LT LHAGGKF +  Y++SGGLHGVGISVVN
Sbjct: 1   DGSVSVTDDGRGIPTDVHP-TTGKSALETVLTILHAGGKFGSGGYKVSGGLHGVGISVVN 59

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS  + VTV R + + +Q++ RGIP++ L        K GTR+ F PD +IF     FD
Sbjct: 60  ALSAWVDVTVWRDHKVHTQRYERGIPVTELVSSPSQEEKTGTRVNFLPDTEIFSQGIEFD 119

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
            + L    +  AYL+  VK  +S  +        P  E + + GG+K Y+      +  +
Sbjct: 120 YSTLSGRLRELAYLNAGVKITFSDYR-----PEEPHIETYCYEGGIKEYVAYMCREKETL 174

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIK 343
             +I     EK G     V +       +  I  + N I T +GGTH  GL+  LTR + 
Sbjct: 175 HKDIIYVSGEKTGI-NIEVAFQWCIDAYSDNILGFANNIRTIDGGTHLEGLKAVLTRTLN 233

Query: 344 KYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
             A      +    ++  +++      ++SV + EPEF GQTKTKL + + +  V++ + 
Sbjct: 234 NVARKRNKIKENEPNLAGENVREGLTAVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVG 293

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSE 427
           +  + YL QNP  A  ++E  ++  +
Sbjct: 294 ETLNEYLEQNPQVADTIIEKAVQAYK 319


>gi|119369908|gb|ABL67968.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 428

 Score =  226 bits (577), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 157/438 (35%), Positives = 222/438 (50%), Gaps = 23/438 (5%)

Query: 131 EIILTTLHAGGKFDNS----TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           E+I+T LHA GKFDN      Y+ SGGLHGVG SVVNALS  L + + R    + Q+F  
Sbjct: 1   EVIMTVLHAAGKFDNETGESAYKTSGGLHGVGASVVNALSTRLTMEIKRDGFTWHQEFRG 60

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIF-----GDKAGFDAARLLKMTQSKAYLSGRV 241
           G          K   + GT I F PDP IF      D   FD  R+ +   ++A+L+  +
Sbjct: 61  GGEPVAELAMGKPSREHGTTIRFWPDPTIFVPEEGQDPLSFDKERVARSLSTRAHLNPGL 120

Query: 242 KTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
                 +++ +E+    E             +   L   S         +T    T +G 
Sbjct: 121 AITMIDERDGSEQTWKAE---------SFAEILDDLATVSSAPVFGPLSETAAVDTDKGR 171

Query: 302 VEWAIA---WCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII 358
           VE  +A     E    I SY N I+T +GGTHE+G+R AL + I  Y +     +   + 
Sbjct: 172 VEVMVALRVHAERASTIASYANNIVTPQGGTHEAGMRSALLKAINAYGKTNGLLKEP-LT 230

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
           ++D+    V  ++V + EP FAGQTK KL + +    V   +      +  +NP +A  L
Sbjct: 231 AEDVQEGLVAAVAVRVTEPLFAGQTKDKLANTECTGAVMQVVYRLLSKHFEENPKDAKNL 290

Query: 419 LEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           +      ++ R    K RE+  +   +    LPGKLADC ++     EL+IVEGDSAGGS
Sbjct: 291 INRAALAAKARAAAEKARELVERKNPLSGGGLPGKLADCQESDPSLCELYIVEGDSAGGS 350

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AKQ R+R  QA+LPL+GK LNV      K   +Q+I ++   LGC   + +    LRY +
Sbjct: 351 AKQGRDRKFQAILPLKGKPLNVMKYDMGKALKSQEISNITTVLGCGVLNTFDISKLRYHR 410

Query: 538 VIIMTDADVDGAHIASLL 555
           VIIMTDADVDG+HI +LL
Sbjct: 411 VIIMTDADVDGSHIRTLL 428


>gi|60459468|gb|AAX20070.1| DNA gyrase subunit B [Leptospira interrogans serovar Pomona]
          Length = 141

 Score =  226 bits (576), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 78/142 (54%), Positives = 106/142 (74%), Gaps = 1/142 (0%)

Query: 51  ILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVV 110
           ILEGLE VR RPGMYIG  DE  LH +  EV+DN++DE +AG+   I++S+  +  + V 
Sbjct: 1   ILEGLEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEIKISILPDNIVEVK 60

Query: 111 DNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELH 170
           DNGRGIPV+ HP     ST+E+++T LHAGGKF+N  Y++SGGLHGVG+SVVNALS+ L 
Sbjct: 61  DNGRGIPVDIHP-DKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYLE 119

Query: 171 VTVARQNTIFSQKFSRGIPLSP 192
           V V ++  +++QK+ RGIP+S 
Sbjct: 120 VEVHQKGKVYTQKYERGIPVSR 141


>gi|148536442|gb|ABQ85773.1| DNA gyrase subunit B [Vibrio orientalis]
          Length = 400

 Score =  226 bits (576), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 152/410 (37%), Positives = 231/410 (56%), Gaps = 15/410 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R     +Q +  G P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVTLTIHRGGHTHTQTYHHGEPQAPLAVVGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GT+I F P  + F +   F    L K  +  ++L+  V      ++E        
Sbjct: 61  T-DKTGTQIRFWPSGETFTN-TEFHYDILAKRLRELSFLNSGVSIMLKDERE------ED 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F F GG++ ++     N++ I  +IF    E++     +VE A+ W +     I  
Sbjct: 113 KSDHFMFEGGIQAFVDHLNTNKTPIIEKIFHFDFERED--GISVEVAMQWNDGFQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV + 
Sbjct: 171 FTNNIPQRDGGTHLAGFRAALTRTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ +    +LV+NP EA  +   +I+        R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLVENPTEAKMVCSKIIDAARAREAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTD 543
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTD
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTD 400


>gi|22091036|dbj|BAC06809.1| gyrase B [Klebsiella oxytoca]
          Length = 390

 Score =  226 bits (576), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 146/401 (36%), Positives = 226/401 (56%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L + + R N I  Q ++ G+P +PL          G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQRDNKIHRQIYAHGVPQAPLAVTGDTEK-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F+
Sbjct: 60  TMVRFWPSYETFTNVIEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +  + YL++NP +A  ++  +I+ +  R   R+ R    R
Sbjct: 230 QTKDKLVSSEVKTAVEQQMNELLNEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|194477398|gb|ACF74795.1| DNA gyrase subunit B [Halorubrum sodomense]
          Length = 401

 Score =  226 bits (576), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 157/410 (38%), Positives = 222/410 (54%), Gaps = 18/410 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP---LEKKEKVRNKR 203
           +Y++SGGLHGVG+SVVNALS+ L V V R   +F  +F+RG P        +        
Sbjct: 3   SYQVSGGLHGVGVSVVNALSERLEVEVRRDGGVFRHEFARGEPAEDGFERVRDMGPDEST 62

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT I F PD +IF     F  + L    +  A+L+  V+     D++  E       E F
Sbjct: 63  GTEIRFWPDEEIFETT-EFQTSTLANRLRELAFLNSGVEIRLVDDRDDTE-------ETF 114

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTI 322
            + GG++ ++    E RS I  E+   + E  G H   VE A+   EE    + ++ N I
Sbjct: 115 KYDGGIREFVAYLNETRSPIHEEVIYFEDETDGVH---VEVAMQATEELQGSVHAFANNI 171

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH +G + ALTR +  YA           ++  +D+      ++SV   +P+F 
Sbjct: 172 NTREGGTHLTGFKTALTRTVNDYANEHGLVDDLDANLKGEDVREGLTAVVSVKHPDPQFE 231

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VN 439
           GQTKTKL + + +  VE+A  +    +  +NP  A K++    E +  R   +K  E   
Sbjct: 232 GQTKTKLGNSEVRGVVESATHEKLGTFFEENPDTAEKVVHKAAEAARARKAAKKAEELTR 291

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK+A+    LPGKLADC        ELF+VEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 292 RKSALESTALPGKLADCQTRDPTEAELFVVEGDSAGGSAKQGRNRENQAILPLKGKILNV 351

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549
                ++I  N +I  L+ A+G     ++  ED+RY K+I+MTDADVDGA
Sbjct: 352 EKHRLDRILENDEIRALITAIGAGIGEEFDIEDVRYNKIILMTDADVDGA 401


>gi|86169563|gb|ABC87021.1| DNA gyrase subunit B [Leuconostoc gelidum KCTC 3527]
          Length = 393

 Score =  226 bits (576), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 144/401 (35%), Positives = 219/401 (54%), Gaps = 13/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKR 203
              Y++SGGLHGVG SVVNALS  L V V R N ++   F  G +  S ++  E+    R
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTNLDVRVIRDNQVYYMDFKIGRVNTSIVKLDEEPTINR 60

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F PD  IF +   F+   LL   +  A+L+  ++   + ++        P  E F
Sbjct: 61  GTIVHFNPDSDIFRETTTFNYNTLLTRVRELAFLNKGLRISITDNR-----LETPVTESF 115

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTI 322
           +F GG+K Y+      +++I  E    + E+ G     VE A+ +  +    + ++ N I
Sbjct: 116 HFEGGIKEYVGYLNSEKTVIFPEPVYVEGEENGI---VVEAALQYTTDIKDSLRTFANNI 172

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE+G + ALTR I  Y       +    S+  +D+      I+S+   +P+F 
Sbjct: 173 NTYEGGTHETGFKTALTRVINDYGRKNGQLKDNAESLTGEDVREGVTAIVSIKHPDPQFE 232

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + DA++  +    + F  ++++NPI A ++++  I   + RL  ++ RE+  
Sbjct: 233 GQTKTKLGNSDARQATDRMFSETFSRFMMENPIVAKQIVDKGILAQKARLAAKRAREMTR 292

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +++ +    LPGKLAD + N    +ELFIVEGDSAGGSAKQ RNR  QA+LP+RGKILNV
Sbjct: 293 KQSGLEIGNLPGKLADNTSNDPALSELFIVEGDSAGGSAKQGRNRVTQAILPIRGKILNV 352

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +++  N++I  L  A+G      +  E   Y KVII
Sbjct: 353 EKATLDRVLGNEEIRSLFTAMGTGFGDDFNVEKANYHKVII 393


>gi|163256307|dbj|BAF95664.1| DNA gyrase subunit B [Bradyrhizobium sp. KO3D]
          Length = 269

 Score =  226 bits (576), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 100/279 (35%), Positives = 154/279 (55%), Gaps = 11/279 (3%)

Query: 82  IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141
           +DN +DE +AG+A+ + V+L+ +  +TV D+GRGIPV+ H K    S  E+I+T LHAGG
Sbjct: 1   VDNEIDEALAGHASRVLVTLNADNSVTVYDDGRGIPVDIH-KGEGISAAEVIMTQLHAGG 59

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD ++Y++SGGLHGVG+SVVNALS +L + + R +     +F+ G  ++PL    +   
Sbjct: 60  KFDQNSYKVSGGLHGVGVSVVNALSSKLELRIWRDDKEHYIEFAHGDAVAPLRVVGEAPG 119

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           KRGT +TF    + F +   +D A L    +  A+L+  V    S  +   EK      E
Sbjct: 120 KRGTEVTFHAAVETFKN-VEYDFATLEHRLRELAFLNSGVNIVLSDMRHAVEKR-----E 173

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCN 320
           E ++ GG++ +++    N+  I       ++E  G     VE A+ W +   E    + N
Sbjct: 174 EMHYSGGVEEFVKYLDRNKKAIVPAPIMVRSEANGI---GVEAALWWNDSYHENVLCFTN 230

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359
            I   +GGTH +G R ALTR +  YAE    K  I++  
Sbjct: 231 NIPQRDGGTHLAGFRGALTRQVNGYAEPNAKKEKIALTG 269


>gi|84310506|gb|ABC55401.1| DNA gyrase subunit B [Bacillus amyloliquefaciens]
          Length = 390

 Score =  226 bits (576), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 149/399 (37%), Positives = 220/399 (55%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            S Y++SGGLHGVG SVVNALS  L VTV R   I  Q + RG+P++ LE   +  +K G
Sbjct: 1   GSGYKVSGGLHGVGASVVNALSTTLDVTVHRDGKIHYQAYERGVPVADLEVIGET-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F PDP+IF +   +D   L    +  A+L+  V       +E  E+        ++
Sbjct: 60  TITHFVPDPEIFKETTVYDYDLLSNRVRELAFLTKGVNITIEDKREGQERKNE-----YH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K+Y++    ++ ++  E    + EK G    TVE A+ + +     I S+ N I 
Sbjct: 115 YEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNIN 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G +  LTR I  YA       +   ++  DD+      I+S+   +P+F G
Sbjct: 172 TYEGGTHEAGFKTGLTRVINDYARRKGIFKENDPNLSGDDVREGLTAIISIKHPDPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNR 440
           QTKTKL + +A+   +       + +L++NP  A K++E  +  +  R+  +K      R
Sbjct: 232 QTKTKLGNSEARTITDTLFSSALETFLLENPDSARKIVEKGLMAARARMAAKKARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 292 KSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
            A  +KI +N ++  ++ ALG      +  E  R+ KV+
Sbjct: 352 KARLDKILSNNEVRSMITALGTGIGEDFNLEKARFHKVV 390


>gi|116327080|ref|YP_796800.1| DNA topoisomerase (ATP-hydrolyzing), subunit B [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116332263|ref|YP_801981.1| DNA topoisomerase (ATP-hydrolyzing), subunit B [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|116119824|gb|ABJ77867.1| DNA topoisomerase (ATP-hydrolyzing), subunit B [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116125952|gb|ABJ77223.1| DNA topoisomerase (ATP-hydrolyzing), subunit B [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 711

 Score =  226 bits (576), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 139/729 (19%), Positives = 266/729 (36%), Gaps = 102/729 (13%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIG----GT------------------- 69
            A   +    +    + + L  +E VRMR GM++G     T                   
Sbjct: 2   SADKTKVKEKSSQERNFKKLSNVEHVRMRTGMWLGQNSASTFEQHFFRKNNEGKYEIVHE 61

Query: 70  ---DEKALHHLFSEVIDNAMDEVI----------AGYANLIEVSLDGN-GFLTVVDNGRG 115
              D  A      E   NA+DE                + + V L  +   +T+ DNGRG
Sbjct: 62  ELEDVPAKLKCLDEACMNAVDEYRKNQKDKTIPEKDKMSKLIVQLSSDRKCVTITDNGRG 121

Query: 116 IPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE-ISGGLHGVGISVVNALSDELHVTVA 174
           IP          +  E +   L  G  FD+   +    G +GVGIS+V  +S+   V   
Sbjct: 122 IP---------AANAEGVYLHLMYGENFDDHVKQDHVAGQNGVGISLVRMVSNYFKVKTV 172

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA----GFDAARLLKM 230
              + F + F+    +    +  K+  +   R+    D                 +L  +
Sbjct: 173 NNGSSFKKLFTVHDDVKKQIRSYKLSKEDIERVFLYFDEHGKFTDCNLLTKDQIDKLNSL 232

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS----E 286
            +         K          E    P+             ++  L++ ++ +     +
Sbjct: 233 LKKTNMQESIEKASKEDHGTSVEFELNPKYFNNLDISFNVDLMKQYLQDIAMTNPGLEVQ 292

Query: 287 IFTGKTEKKGTHRGTVEWAIAWCE-------------------------ENPEITSYCNT 321
                 ++K   +  ++   +  +                            +  ++ N+
Sbjct: 293 FVFKGKKEKYKFKKGLDEIFSHSDLVYYKMDYTAPGSASQLHLETYLVIGQNKNLTWVNS 352

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEF 379
           I   +GG+    L   +   ++K +++   ++ +      +D+       ++  +  P F
Sbjct: 353 IFAPQGGSAIEYLENRICDEVRKKSQIVALEKKLKTSSTRNDVRNCFHMYVNARLLNPRF 412

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN 439
             Q K+ L++        N          ++  I+ T LLE +  + E+R + +   +  
Sbjct: 413 KSQDKSYLINDL------NEDIRNAVDKHLEKFIKKTGLLEEIKLQMEKRTQLKAFEDAQ 466

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIV-EGDSAGGSAKQARNRSNQAVLPLRGKILN 498
           +           KL   +        +  V EGDSA    + ARN     + PLRGK LN
Sbjct: 467 KGLKKASRMNIPKLMPPTGKPGDPGRVLFVAEGDSAIAGLRPARNPKLHGLFPLRGKPLN 526

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLT 557
                  K   N+++ ++V  +G     + +  D L Y+KV I+TDAD DG  I SL+L+
Sbjct: 527 CKGLSIAKAIANEELKNIVAIVGLPLDQKVKSVDELNYDKVSIITDADFDGYAIRSLMLS 586

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRI-----TQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612
           FFY+   +L E   + + S PL+ +      +  ++V+  D++  + +++  +K+G    
Sbjct: 587 FFYEYWPELFELGFIHISSAPLYEVDVKFGDKKKETVFCIDDKDYEDLIKRVEKNGGEIT 646

Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
              R KGLGE    +  + A+D     + ++ I    ++ K      +K     A++R  
Sbjct: 647 RKKRNKGLGE-TGKEAMKFAVDE---CMTKITIGNKKDASKIQNLWFHK---DFAEQRRD 699

Query: 673 FIQERASFI 681
            I E A  +
Sbjct: 700 AISEYAMSV 708


>gi|60459478|gb|AAX20075.1| DNA gyrase subunit B [Leptospira interrogans serovar Zanoni]
 gi|160948494|dbj|BAF93858.1| DNA gyrase subunit B [Leptospira interrogans serovar Perameles]
          Length = 142

 Score =  226 bits (576), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 75/140 (53%), Positives = 105/140 (75%), Gaps = 1/140 (0%)

Query: 52  LEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVD 111
           LEGLE VR RPGMYIG  DE  LH +  EV+DN++DE +AG+   I++S+  +  + V D
Sbjct: 2   LEGLEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEIKISILPDNIVEVKD 61

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171
           NGRGIPV+ HP     ST+E+++T LHAGGKF+N  Y++SGGLHGVG+SVVNALS+ L V
Sbjct: 62  NGRGIPVDIHP-DKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYLEV 120

Query: 172 TVARQNTIFSQKFSRGIPLS 191
            V ++  +++QK+ +G+P+S
Sbjct: 121 EVHQKGKVYTQKYEKGVPVS 140


>gi|20387194|dbj|BAB91297.1| gyrase B [Streptomyces olivoreticuli subsp. cellulophilus]
 gi|20387196|dbj|BAB91298.1| gyrase B [Streptomyces olivoreticuli]
 gi|308152561|dbj|BAJ22259.1| DNA gyrase subunit B [Streptomyces olivoreticuli]
 gi|308152581|dbj|BAJ22269.1| DNA gyrase subunit B [Streptomyces olivoreticuli]
          Length = 399

 Score =  226 bits (576), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 139/401 (34%), Positives = 213/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V R    ++Q +  G P +PL+K E      G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKRDGFHWTQDYKLGAPTAPLQKNEPTEE-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  +    + ++    ++ G P    +
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLTISLTDERPAHVDEEGKPLSVRY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTI 322
           ++ GG+  +++     +  +          +      ++E ++ W  +  E + S+ NTI
Sbjct: 119 HYEGGISDFVRYLNSRKGEVIHPSVIAFESEDKERMLSLEVSMQWNTQYSEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I +YA   +   ++  ++  DD+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGDDIREGLTAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+  + +    +L +NP EA+ ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKVVHEQLTDWLDRNPNEASDIIRKSIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLETASLPGKLSDCQSNEPAKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  N +I  L+ A G      +    LRY K+I+
Sbjct: 359 EKARIDKILQNTEIQALISAFGTGVHEDFDISKLRYHKIIL 399


>gi|41387070|gb|AAS01489.1| GyrB [Bacillus sp. 83-3C]
 gi|41387072|gb|AAS01490.1| GyrB [Bacillus sp. 83-5C]
          Length = 387

 Score =  226 bits (576), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 143/397 (36%), Positives = 216/397 (54%), Gaps = 14/397 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS EL V V R   I  QK+ RGIP++ L+      +K G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F+PDP+IF +   ++   L    +  A+L+  +K      +E  +K      +EF+
Sbjct: 60  TITRFKPDPEIFKETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFH 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+K+Y++    ++  I  E    +  K G     VE A+ + E       S+ N I 
Sbjct: 114 YEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIH 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G + ALTR I  Y       +    ++  +D+      I+S+    P+F G
Sbjct: 171 TYEGGTHEVGFKTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNR 440
           QTKTKL + +A+   E+   + F+ +L++NP  A K+++   +        ++ +    R
Sbjct: 231 QTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV 
Sbjct: 291 KSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
            A  +KI +N ++  ++ A+G      +  E  RY K
Sbjct: 351 KARLDKILSNDEVRTIITAIGTNIGGDFDIEKARYHK 387


>gi|159146562|gb|ABW90725.1| DNA gyrase beta subunit [Vibrio vulnificus]
          Length = 400

 Score =  226 bits (576), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 149/410 (36%), Positives = 229/410 (55%), Gaps = 15/410 (3%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R     SQ +  G+P +PL      
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEKVLLTIHRGGHTHSQTYRHGVPDAPLAIIGDT 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
               GT + F P  + F +   F    L K  +  ++L+  V      ++E  +K     
Sbjct: 61  EK-TGTTVRFWPSAQTFTN-IEFHYDILAKRLRELSFLNSGVSIKLFDEREEDKK----- 113

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
            + F + GG++ ++     N++ I  ++F   +E++      VE A+ W +     I  +
Sbjct: 114 -DHFMYEGGIQAFVTHLNRNKTPIHEKVFHFNSERED--GIAVEVAMQWNDGFQENIYCF 170

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +G R ALTR +  Y +      K   +   DD       ++SV + +
Sbjct: 171 TNNIPQRDGGTHLAGFRAALTRTLNSYMDKEGYSKKAKTATSGDDAREGLTAVVSVKVPD 230

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQ 435
           P+F+ QTK KLVS + +  VE+ + D  + +L ++P EA  +   +I+        R+ +
Sbjct: 231 PKFSSQTKDKLVSSEVKSAVESFMADKLNDFLAEHPSEAKTVCSKIIDAARAREAARKAR 290

Query: 436 REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
               RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GK
Sbjct: 291 EMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGK 350

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           ILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDA
Sbjct: 351 ILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDA 400


>gi|85541233|gb|ABC70857.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Bovismorbificans]
          Length = 392

 Score =  226 bits (576), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 146/403 (36%), Positives = 225/403 (55%), Gaps = 16/403 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F
Sbjct: 60  GTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           ++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I
Sbjct: 113 HYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNI 169

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+
Sbjct: 170 PQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFS 229

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    
Sbjct: 230 SQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTR 289

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL++VEGDSAGG AKQ RNR N A+LPL+GKILNV
Sbjct: 290 RKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGFAKQGRNRKNPAILPLKGKILNV 349

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIM 541
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIM
Sbjct: 350 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIM 392


>gi|22091020|dbj|BAC06801.1| gyrase B [Enterobacter aerogenes]
          Length = 390

 Score =  226 bits (576), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 145/401 (36%), Positives = 225/401 (56%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L + + R N +  Q +  G+P +PL    +     G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQRDNKVHKQIYEHGVPQAPLAVTGET-ESTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F+
Sbjct: 60  TMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    R
Sbjct: 230 QTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|20387184|dbj|BAB91292.1| gyrase B [Streptomyces sp. IFO 13202]
          Length = 399

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 140/401 (34%), Positives = 216/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V R    ++Q +  G+P +PL+K E   +  G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKRDGFRWTQDYKLGVPTAPLQKNEATDD-SG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  ++   +  + +  ++ G P   E+
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLRIALTDLRADHVDEEGKPLTVEY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTI 322
           ++ GG+  +++     +  +          +      +VE A+ W  +  E + S+ NTI
Sbjct: 119 HYEGGIVDFVKYLNSRKGELIHPTVIDIEAEDKERLLSVEVAMQWNTQYSEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I +YA   +   ++  ++  +D+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGEDIREGLTAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+  + +    +L +NP EA  ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKVVHEHLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  N ++  L+ A G      +    LRY K+I+
Sbjct: 359 EKARIDKILQNTEVQALISAFGTGVHEDFDIAKLRYHKIIL 399


>gi|156901528|gb|ABU96754.1| GyrB [Salmonella enterica subsp. arizonae]
          Length = 391

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 146/401 (36%), Positives = 225/401 (56%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P +PL       +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQLYEHGVPQAPLAITGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F+
Sbjct: 60  TMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    R
Sbjct: 230 QTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|22091022|dbj|BAC06802.1| gyrase B [Enterobacter cloacae]
          Length = 390

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 146/401 (36%), Positives = 223/401 (55%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL          G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYQHGVPEAPLAVTGDTEK-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F+
Sbjct: 60  TMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL +NP +A  ++  +I+ +  R   RK R    R
Sbjct: 230 QTKDKLVSSEVKSAVEQQMNELLSDYLQENPNDAKIVVGKIIDAARAREAARKAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|308153062|dbj|BAJ22120.1| DNA gyrase subunit B [Bacillus azotoformans]
          Length = 379

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 143/388 (36%), Positives = 208/388 (53%), Gaps = 14/388 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS EL V V     I   KF RG  +  L+   +  +K G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTELEVFVHLDGKIHYIKFERGAVVEELKVIGET-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PDP+IF +   ++   L    +  A+L+  +       +         + + + 
Sbjct: 60  TIVHFSPDPEIFQETTVYEYDVLATRLRELAFLNRGLNLIIEDKR------PEGKTQHWC 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+ +Y++    +R +I  E      EK G    T E A+ + +     I S+ N I 
Sbjct: 114 YEGGIISYVEHLNRSREVIHEEPVYVMGEKDGI---TAEVALQYNDSYVSNIYSFANNIH 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G + ALTR I  YA  +   +    ++  DD+      I+SV   +P+F G
Sbjct: 171 TYEGGTHEVGFKTALTRVINDYARKSGMFKENDPNLTGDDVREGLTTIISVKHPDPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + + +  V++   +  D +L++NP    K++E  +  S  R+  +K RE   R
Sbjct: 231 QTKTKLGNSEVRAIVDSVFSEQLDKFLMENPSVGKKIVEKGLMASRARIAAKKARELTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADCS   A  +EL+IVEGDSAGGSAK  R+R  QA+LPLRGKILNV 
Sbjct: 291 KGALEISSLPGKLADCSSKDASISELYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQY 528
            A  ++I +N +I  ++ ALG      +
Sbjct: 351 KARLDRILSNNEIRTIITALGTGIGEDF 378


>gi|22091024|dbj|BAC06803.1| gyrase B [Enterobacter cloacae]
          Length = 390

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 146/401 (36%), Positives = 223/401 (55%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL          G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYQHGVPEAPLAVTGDTEK-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F+
Sbjct: 60  TMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL +NP +A  ++  +I+ +  R   RK R    R
Sbjct: 230 QTKDKLVSSEVKSAVEQQMNELLSDYLQENPSDAKIVVGKIIDAARAREAARKAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|4996824|dbj|BAA78457.1| subunit B protein of DNA gyrase [bacterium rA3]
          Length = 323

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 109/328 (33%), Positives = 166/328 (50%), Gaps = 33/328 (10%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPN 126
           D   LHHL  EV+DN++DE +AGY + I V++  +G+L+V+DNGRGIP          P 
Sbjct: 4   DGTGLHHLVFEVVDNSIDEALAGYCDDILVTIHADGWLSVIDNGRGIPTGVKMDDKHEPK 63

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNAL+  L +TV+R    +  +FSR
Sbjct: 64  RSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALTVWLKLTVSRDGQRYEIEFSR 123

Query: 187 GIP------------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           G              +SP+    +  ++RGT++ F PD +IF D   F    L K  +  
Sbjct: 124 GHVQNRLIEVVDGSEVSPMHVAGE-SDERGTKVHFLPDQEIFKDNYDFRYEILAKRLREL 182

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V+     ++   E         F   GG+K +++     + ++    F     +
Sbjct: 183 SFLNNGVRIRLKDERNGKEDD-------FSGAGGVKGFVEFISGAKKVLHPTAFHAMGSR 235

Query: 295 KGT-------HRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYA 346
                         VE ++ W +   E    + N I   +GGTH +GLR A+TR I KY 
Sbjct: 236 PAETYGGIPGTEIGVEISMQWNDSYGEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYI 295

Query: 347 ELTQ--NKRAISIISDDLMISAVGILSV 372
           E      K  + +  DD+      +LSV
Sbjct: 296 EQNDLAKKAKVEVTGDDMREGLCSVLSV 323


>gi|115333965|gb|ABI94015.1| DNA gyrase subunit B [Bacillus amyloliquefaciens]
          Length = 390

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 150/399 (37%), Positives = 219/399 (54%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            S Y++SGGLHGVG SVVNALS  L VTV R   I  Q + RG+P++ LE      +K G
Sbjct: 1   GSGYKVSGGLHGVGASVVNALSTTLDVTVHRDGKIHYQAYERGVPVADLEVIGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F PDP+IF +   +D   L    +  A+L+  V       +E  E+        ++
Sbjct: 60  TITHFVPDPEIFKETTVYDYDLLSNRVRELAFLTKGVNITIEDKREGQERKNE-----YH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K+Y++    ++ ++  E    + EK G    TVE A+ + +     I S+ N I 
Sbjct: 115 YEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNIN 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G +  LTR I  YA       +   ++  DD+      I+S+   +P+F G
Sbjct: 172 TYEGGTHEAGFKTGLTRVINDYARRKGIFKENDPNLSGDDVREGLTAIISIKHPDPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNR 440
           QTKTKL + +A+   +       + +L++NP  A K++E  +  +  R+  +K      R
Sbjct: 232 QTKTKLGNSEARTITDTLFSSALETFLLENPDSARKIVEKGLMAARARMAAKKARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 292 KSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
            A  +KI +N ++  ++ ALG      +  E  RY KV+
Sbjct: 352 KARLDKILSNNEVRSMIPALGTGIGEDFNLEKARYHKVV 390


>gi|190148862|gb|ACE63406.1| DNA gyrase B subunit [Pseudonocardia tetrahydrofuranoxydans]
          Length = 409

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 137/415 (33%), Positives = 218/415 (52%), Gaps = 20/415 (4%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+ +Y +SGGLHGVG+SVVNALS  L V +      + Q+++R +P +  +       + 
Sbjct: 1   DSDSYAVSGGLHGVGVSVVNALSTRLDVEIDTDGFHWDQQYTRSVPGTLNK--GAATRRT 58

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP----- 258
           GT ITF  DP IF     ++   + +  Q  A+L+  +      ++              
Sbjct: 59  GTTITFWADPDIFETTV-YNIETIRRRLQEMAFLNKGLTIVLRDERNGDSDEAEEPDAEG 117

Query: 259 -----EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
                ++  F +P GL+ ++    + +  I  ++     E  G     +E A+ W     
Sbjct: 118 YVAKVKEHVFCYPNGLEDFVAHLNKTKDPIYKKLVAFTGEAPGH---ALEVAMQWNSGYT 174

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
             + ++ NTI T EGGTHE G R ALT  + KYA   +   ++  ++  DD+      I+
Sbjct: 175 ESVYTFANTINTHEGGTHEEGFRAALTSTVNKYARDKKLLKEKDPALSGDDIREGLAAIV 234

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV ++EP+F GQTKTKL + + +  V+    +    +  +NP EA  ++   ++ ++ RL
Sbjct: 235 SVKVKEPQFEGQTKTKLGNTEVKSFVQRISNEWLADWFERNPTEARTIVNKAVQSAQARL 294

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+
Sbjct: 295 AARKARELVRRKSAGDIGGLPGKLADCRSTDPSKSEVYIVEGDSAGGSAKSGRDSMTQAI 354

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
           LP+RGKI+NV  A  +++  N ++  ++ ALG     ++    LRY K+++MTDA
Sbjct: 355 LPIRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDLAKLRYHKIVLMTDA 409


>gi|20387228|dbj|BAB91314.1| gyrase B [Streptomyces thioluteus]
          Length = 399

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 139/401 (34%), Positives = 215/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL+K E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGFRWTQDYKLGVPTAPLQKNEAT-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  +    + ++ +  ++ G P    +
Sbjct: 60  TTVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLSISLTDERPDHVDEEGKPLSVRY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTI 322
           ++ GG+  ++      +  +          +      +VE A+ W  +  E + S+ NTI
Sbjct: 119 HYEGGISDFVTYLNSRKGELVHPTVIDFEAEDKERMLSVEVAMQWNTQYSEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  + +YA   +   ++  ++  DD+      I+S+ + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTGLVNRYARDKKLLREKDDNLTGDDIREGLTAIISIKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+  + +    +L +NP EA  ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKVVHEHLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPEYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  NQ+I  L+ A G      +    LRY K+I+
Sbjct: 359 EKARVDKILQNQEIQALISAFGTGVHEDFDISKLRYHKIIL 399


>gi|22090932|dbj|BAC06757.1| gyrase B [Salmonella paratyphi]
 gi|22090934|dbj|BAC06758.1| gyrase B [Salmonella paratyphi]
 gi|22090936|dbj|BAC06759.1| gyrase B [Salmonella paratyphi]
          Length = 390

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 145/401 (36%), Positives = 225/401 (56%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P +PL       +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F+
Sbjct: 60  TMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   IF   TEK G     +E A+ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GIEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    R
Sbjct: 230 QTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|295979519|dbj|BAJ07432.1| DNA gyrase subunit B [Planktothrix agardhii]
 gi|295979521|dbj|BAJ07433.1| DNA gyrase subunit B [Planktothrix agardhii]
 gi|295979545|dbj|BAJ07445.1| DNA gyrase subunit B [Planktothrix agardhii]
          Length = 352

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 114/339 (33%), Positives = 174/339 (51%), Gaps = 4/339 (1%)

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AGY   IE+  + +G +TV D+GRGIPV+ H K   KS LE +LT LHAGGKF    Y++
Sbjct: 1   AGYCTHIEIDFNPDGSVTVTDDGRGIPVDTHSK-TGKSALETVLTVLHAGGKFGGGGYKV 59

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS+ + VTV R    + Q++ RG P + L  K     + GT + F 
Sbjct: 60  SGGLHGVGVSVVNALSEWVEVTVYRDKKQYRQRYERGTPATELTSKSIKETRTGTSVCFL 119

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PD  IF     FD   +    +  AYL+  VK   S ++    K   P  E + + GG++
Sbjct: 120 PDTLIFTTGIEFDYDTIASRLRELAYLNAGVKITLSDNRLELLKRDTPRVETYCYEGGIR 179

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330
            Y+     ++  +  +I     E+    +  V         +  I  + N I T +GGTH
Sbjct: 180 EYIAYMNNDKQPLHEDIIYVFGERNNV-QIEVALQWCTDAYSDTILGFANNIRTVDGGTH 238

Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             GL+  LTR +   A      +    ++  +++      ++SV + +PEF GQTKTKL 
Sbjct: 239 LEGLKTVLTRTLNAIARKRNKLKEGDANLGGENIREGLTAVISVKVPDPEFEGQTKTKLG 298

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
           + + +  V++ + +    YL  NP  A  ++E  I+  +
Sbjct: 299 NTEVRGIVDSLVGETLTEYLEFNPGIADSVIEKAIQAFK 337


>gi|198042686|gb|ACH81168.1| GyrB [Pseudoalteromonas sp. UST050418-009]
          Length = 391

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 142/400 (35%), Positives = 223/400 (55%), Gaps = 15/400 (3%)

Query: 136 TLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK 195
            LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L +TV R+  +  Q ++ G+P +PL  
Sbjct: 1   VLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKLTVRREGKLHEQFYTMGVPDAPLAI 60

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
                   GT + F P  + F +   F    L K  +  ++L+  V    + ++E     
Sbjct: 61  IGD-SETTGTELRFWPSAETFTN-LDFHYDILAKRLRELSFLNSGVSIILNDERE----- 113

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PE 314
              + + F + GG++ +++    N++ I   +F    E++     +VE ++ W +     
Sbjct: 114 -ENKSDHFKYEGGIQAFVEYLNRNKTPIHKGVFHFTHERE-EDGISVEVSMQWNDAYQEN 171

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYA----ELTQNKRAISIISDDLMISAVGIL 370
           I  + N I   +GGTH +G R ALTR +  Y        + K   +   DD       ++
Sbjct: 172 IYCFTNNIPQRDGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVV 231

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EER 429
           SV + +P+F+ QTK KLVS + +  VE A+ + F  +L++NP +A  ++  +I+ S    
Sbjct: 232 SVKVPDPKFSSQTKDKLVSSEVKSAVEQAMAEKFTEFLLENPTDAKIVVGKIIDASRARE 291

Query: 430 LRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+
Sbjct: 292 AARKAREMTRRKGAMDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAI 351

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           LPL+GKILNV  A  +K+ ++Q++  L+ ALGC       
Sbjct: 352 LPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEY 391


>gi|33186727|emb|CAE12277.1| gyrase B subunit [Vibrio splendidus]
          Length = 403

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 153/413 (37%), Positives = 228/413 (55%), Gaps = 15/413 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKF++++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +  G P +PL     
Sbjct: 1   AGGKFNDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GT I F P  + F +   F    L K  +  ++L+  V       +E        
Sbjct: 61  T-DKTGTEIRFWPSEETFNN-IEFHYDILAKRLRELSFLNSGVSIKLIDKRE------ED 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F + GG++  ++    N++ I  +IF    E++     TVE A+ W +     I  
Sbjct: 113 KMDHFEYEGGIQAIVEHLNTNKTPIIQKIFHFDHERED--GITVEVAMQWNDGYQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GG H +G R ALTR +  + +      K   S   DD       I+SV + 
Sbjct: 171 FTNNIPQRDGGAHLAGFRGALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE+ + +    +L++NP EA  +   +I         R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADV 546
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIM DADV
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMADADV 403


>gi|41387051|gb|AAS01482.1| GyrB [Bacillus sp. H-09]
 gi|41387056|gb|AAS01484.1| GyrB [Bacillus sp. H-12]
 gi|237502649|gb|ACQ94973.1| DNA gyrase subunit B [Brevibacillus brevis]
          Length = 390

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 145/400 (36%), Positives = 220/400 (55%), Gaps = 14/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS EL V V R+  I  QK+ RGIP++ L+      ++ G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F+PDP+IF +   ++   L    +  A+L+  +K      +E  +K      +EF+
Sbjct: 60  TITRFKPDPEIFQETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFH 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+K+Y++    ++  I  E    +  K G     VE ++ + E       S+ N I 
Sbjct: 114 YEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIH 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G + ALTR I  Y       +    ++  +D+      I+S+    P+F G
Sbjct: 171 TYEGGTHEVGFKTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNR 440
           QTKTKL + +A+   E+   + F+ +L++NP  A K++E   +        ++ +    R
Sbjct: 231 QTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV 
Sbjct: 291 KSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +KI +N ++  ++ A+G      +  E  RY KVII
Sbjct: 351 KARLDKILSNDEVRTIITAIGTNIGGDFDIEKARYHKVII 390


>gi|148536432|gb|ABQ85768.1| DNA gyrase subunit B [Aliivibrio logei]
          Length = 402

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 156/411 (37%), Positives = 230/411 (55%), Gaps = 14/411 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R+  IF Q +  G+P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRRGEIFQQIYCHGVPQAPLAVIG- 59

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +  GT+I F P  + F +   F    L K  +  ++L+  V       +E        
Sbjct: 60  TTDTTGTKIRFWPSDQTFAN-IEFVYDILAKRLRELSFLNSGVSIRLQDMRE------ED 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F F GG+K ++     N++ +  +IF    E+K      VE A+ W +     I  
Sbjct: 113 KSDHFMFEGGIKAFVTHLNRNKTPVHQKIFYFDAERK-EDGIVVEVAMQWNDSYQENIFC 171

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           Y N I   +GG H SG R ALTR +  + +      K   S   DD       ++SV + 
Sbjct: 172 YTNNIPQRDGGAHLSGFRSALTRTLNSFMDKEGFSKKAKSSASGDDAREGLTAVVSVKVP 231

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ +    +L +NP EA  +   +I+        R+ 
Sbjct: 232 DPKFSSQTKDKLVSSEVKSAVESAMNEKLAEFLAENPGEAKMVCSKIIDAARAREAARKA 291

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 292 REMTRRKGALDIAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 351

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDA
Sbjct: 352 KILNVEKARFDKMISSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMTDA 402


>gi|22091042|dbj|BAC06812.1| gyrase B [Yersinia enterocolitica]
 gi|22091044|dbj|BAC06813.1| gyrase B [Yersinia enterocolitica]
 gi|22091052|dbj|BAC06817.1| gyrase B [Yersinia enterocolitica]
 gi|22091054|dbj|BAC06818.1| gyrase B [Yersinia enterocolitica]
          Length = 390

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 140/401 (34%), Positives = 223/401 (55%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS++L + + R+  +  Q +  G+P +PL+   +  ++ G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DQTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F    L K  +  ++L+  V       +   E       + F+
Sbjct: 60  TTVRFWPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDKRNDKE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I  ++F   T K       VE A+ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEYLNKNKNPIHPKVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH  G R A+TR +  Y +      K  IS   DD     + ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+        R+ +    R
Sbjct: 230 QTKDKLVSSEVKTAVETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIII 390


>gi|308153066|dbj|BAJ22122.1| DNA gyrase subunit B [Bacillus cereus ATCC 14579]
          Length = 390

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 146/400 (36%), Positives = 220/400 (55%), Gaps = 14/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS EL V V R+  I  QK+ RGIP++ L+      ++ G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F+PDP+IF +   +D   L    +  A+L+  +K      +E  +K      +EF+
Sbjct: 60  TITRFKPDPEIFQETTVYDFDTLATRMRELAFLNRSIKLTIEDKREHKQK------KEFH 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+K+Y++    ++  I  E    +  K G     VE ++ + E       S+ N I 
Sbjct: 114 YEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIH 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G + ALTR I  Y       +    ++  +D+      I+S+    P+F G
Sbjct: 171 TYEGGTHEVGFKTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNR 440
           QTKTKL + +A+   E+   + F+ +L++NP  A K++E   +        ++ +    R
Sbjct: 231 QTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV 
Sbjct: 291 KSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +KI +N ++  ++ A+G      +  E  RY KVII
Sbjct: 351 KARLDKILSNDEVRTIITAIGTNIGGDFDIEKARYHKVII 390


>gi|211927081|dbj|BAG82793.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 390

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 142/401 (35%), Positives = 225/401 (56%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L + + R+  +  Q +  G+P +PL       +  G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELLIRREGKVHQQTYIHGVPQAPLAATGDT-DATG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T++ F P  + F +   F+   L K  +  ++L+  V       ++         ++ F+
Sbjct: 60  TQVRFWPSHETFTNVIEFEYDILAKRLRELSFLNSGVSIRLIDKRD-------GRQDHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG++ +++   +N++ I   +F   TEK G     VE A+ W +     I  + N I 
Sbjct: 113 YEGGIRAFVEYLNKNKTPIHPTVFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R A+TR +  Y E      K  +S   DD     + ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRSAMTRTLNAYMEKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    R
Sbjct: 230 QTKDKLVSSEVKTAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPAHSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+  +Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 KARFDKMLASQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|126035330|gb|ABN72418.1| gyrase B subunit [Shigella flexneri]
          Length = 390

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 146/401 (36%), Positives = 225/401 (56%), Gaps = 16/401 (3%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++
Sbjct: 60  MVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHY 112

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I  
Sbjct: 113 EGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQ 169

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ Q
Sbjct: 170 RDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQ 229

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRK 441
           TK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK
Sbjct: 230 TKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRK 289

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  
Sbjct: 290 GALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 349

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIM 541
           A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIM
Sbjct: 350 ARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIM 390


>gi|41387058|gb|AAS01485.1| GyrB [Bacillus sp. H-13]
 gi|41387066|gb|AAS01488.1| GyrB [Bacillus thuringiensis serovar aizawai]
          Length = 390

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 146/400 (36%), Positives = 220/400 (55%), Gaps = 14/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS EL V V R+  I  QK+ RGIP++ L+      ++ G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F+PDP+IF +   +D   L    +  A+L+  +K      +E  +K      +EF+
Sbjct: 60  TITRFKPDPEIFQETTVYDFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFH 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+K+Y++    ++  I  E    +  K G     VE ++ + E       S+ N I 
Sbjct: 114 YEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIH 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G + ALTR I  Y       +    ++  +D+      I+S+    P+F G
Sbjct: 171 TYEGGTHEVGFKTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNR 440
           QTKTKL + +A+   E+   + F+ +L++NP  A K++E   +        ++ +    R
Sbjct: 231 QTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV 
Sbjct: 291 KSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +KI +N ++  ++ A+G      +  E  RY KVII
Sbjct: 351 KARLDKILSNDEVRTIITAIGTNIGGDFDIEKARYHKVII 390


>gi|148536438|gb|ABQ85771.1| DNA gyrase subunit B [Vibrio mediterranei]
          Length = 400

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 155/410 (37%), Positives = 229/410 (55%), Gaps = 15/410 (3%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +  G P +PL+     
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSKKVTLTIHRGGQIHTQTYHHGEPEAPLKVIGDT 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            +K GT I F P  + F +   F    L K  +  ++L+  V       +E        +
Sbjct: 61  -DKTGTEIRFWPSEETFTN-IEFHYDILAKRLRELSFLNSGVSIKLIDKRE------EDK 112

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
            + F F GG++ +++    N++ I  +IF    E+      TVE A+ W +     I  +
Sbjct: 113 MDHFMFEGGIQAFVEHLNTNKTPIIQKIFHFDNERDD--GITVEVAMQWNDGYQENIYCF 170

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +G R ALTR +  + +      K   +   DD       I+SV + +
Sbjct: 171 TNNIPQRDGGTHLAGFRAALTRTLNTFMDKEGFSKKAKTATSGDDAREGLTAIVSVKVPD 230

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQ 435
           P+F+ QTK KLVS + +  VE+A+ +    +LV+NP EA  +   +I         R+ +
Sbjct: 231 PKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLVENPGEAKIVCTKIIDAARARDAARKAR 290

Query: 436 REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
               RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GK
Sbjct: 291 EMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGK 350

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           ILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDA
Sbjct: 351 ILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDA 400


>gi|85541247|gb|ABC70864.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Anatum]
          Length = 392

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 146/402 (36%), Positives = 225/402 (55%), Gaps = 16/402 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F
Sbjct: 60  GTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           ++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I
Sbjct: 113 HYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNI 169

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+
Sbjct: 170 PQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFS 229

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    
Sbjct: 230 SQTKDKLVSSEVKSAVEQQMNELLSEYLLENPFDAKIVVGKIIDAARAREAARRAREMTR 289

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL++VEGDSAGG AKQ RNR NQA+LPL+GKILNV
Sbjct: 290 RKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGFAKQGRNRKNQAILPLKGKILNV 349

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 EKARFDKMLSSQEVATLIPALGCGIGRDEYNPDKLRYHSIII 391


>gi|22090644|dbj|BAC06613.1| gyrase B [Escherichia coli]
 gi|22090662|dbj|BAC06622.1| gyrase B [Escherichia coli]
 gi|22090766|dbj|BAC06674.1| gyrase B [Escherichia coli]
          Length = 390

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 145/401 (36%), Positives = 225/401 (56%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL    +     G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F+
Sbjct: 60  TMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    R
Sbjct: 230 QTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIII 390


>gi|19909705|dbj|BAB87048.1| DNA gyrase subunit B [Comamonas testosteroni]
          Length = 307

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 100/305 (32%), Positives = 152/305 (49%), Gaps = 29/305 (9%)

Query: 74  LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTL 130
           LHHL  EV+DN++DE +AGY + I V++  +G L+V+DNGRGIP          P +S  
Sbjct: 1   LHHLVFEVVDNSIDEALAGYCDDILVTIHADGSLSVIDNGRGIPTGVKMDDKHEPKRSAA 60

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV+R        FSRG   
Sbjct: 61  EIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSVWLKLTVSRDGRRHEIDFSRGFVQ 120

Query: 191 SP-----------LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
           +              +     +KRGT++ F PD +IF +   F    L K  +  ++L+ 
Sbjct: 121 NRLIEVVDGAEVSPMRVVGASDKRGTKVHFLPDQEIFKENFEFRYEILAKRLRELSFLNN 180

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT-- 297
            V+     +++  E         F   GG+K ++Q     + ++    F     +     
Sbjct: 181 GVRIRLKDERDGKEDD-------FSGAGGVKGFVQFINGTKKVLHPTTFHANGSRPAETY 233

Query: 298 -----HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN 351
                    VE ++ W +    ++  + N I   +GGTH +GLR A+TR I KY    + 
Sbjct: 234 GGIPGTEIGVEVSMQWNDSYAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIADNEM 293

Query: 352 KRAIS 356
            +   
Sbjct: 294 AKKAK 298


>gi|20387150|dbj|BAB91275.1| gyrase B [Streptomyces roseoverticillatus]
          Length = 399

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 139/401 (34%), Positives = 214/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL+K E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGFRWTQDYKLGVPTAPLQKNEPT-DEHG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  +    + ++    ++ G P    +
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLTISLTDERPAHVDEEGKPLTVRY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           ++ GG+  +++     +  +          +      ++E A+ W  +    + S+ NTI
Sbjct: 119 HYEGGISDFVRYLNSRKGEVIHPTVIDFEAEDKERMLSLEVAMQWNSQYTEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I +YA   +   ++  ++  DD+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGDDIREGLTAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+  + +    +L +NP EA  ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKVVHEQLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLETASLPGKLSDCQSNEPAKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  NQ+I  L+ A G      +    LRY K+I+
Sbjct: 359 EKARIDKILQNQEIQALISAFGTGVHEDFDISKLRYHKIIL 399


>gi|126035300|gb|ABN72403.1| gyrase B subunit [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
          Length = 389

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 146/400 (36%), Positives = 224/400 (56%), Gaps = 16/400 (4%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P +PL       +K GT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++
Sbjct: 60  MVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHY 112

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I  
Sbjct: 113 EGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQ 169

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ Q
Sbjct: 170 RDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQ 229

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRK 441
           TK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK
Sbjct: 230 TKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRK 289

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  
Sbjct: 290 GALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 349

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
           A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 ARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 389


>gi|198042712|gb|ACH81181.1| GyrB [Vibrio sp. UST010723-010]
          Length = 392

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 141/402 (35%), Positives = 222/402 (55%), Gaps = 14/402 (3%)

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           +T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL
Sbjct: 1   MTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIHRGGHIHTQTYHHGEPQAPL 60

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
                  +K GT I F P  + F +   F    L K  +  ++L+  V    + ++E   
Sbjct: 61  AVVGDT-DKTGTMIRFWPSDQTFTN-VEFHYDILAKRLRELSFLNSGVSIKLADERE--- 115

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
                + + F + GG++ ++     N++ I  ++F   +E++     +VE A+ W +   
Sbjct: 116 ---EDKHDHFMYEGGIQAFVNHLNTNKTPIHEKVFHFNSERED--GISVEVAMQWNDGFQ 170

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
             I  + N I   +GGTH +G R ALTR +  + +      K   +   DD       ++
Sbjct: 171 ENIYCFTNNIPQRDGGTHLAGFRAALTRTLNTFMDKEGFSKKAKTATSGDDAREGLTAVV 230

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEER 429
           SV + +P+F+ QTK KLVS + +  VE+ + +    +L ++P EA  +   +I+      
Sbjct: 231 SVKVPDPKFSSQTKDKLVSSEVKSAVESTMGEKLSEFLAEHPSEAKMVCSKIIDAARARE 290

Query: 430 LRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+
Sbjct: 291 AARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAI 350

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE 531
           LPL+GKILNV  A  +K+ ++Q++  L+ ALGC         
Sbjct: 351 LPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNP 392


>gi|22091046|dbj|BAC06814.1| gyrase B [Yersinia enterocolitica]
 gi|22091048|dbj|BAC06815.1| gyrase B [Yersinia enterocolitica]
 gi|22091050|dbj|BAC06816.1| gyrase B [Yersinia enterocolitica]
          Length = 390

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 140/401 (34%), Positives = 223/401 (55%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS++L + + R+  +  Q +  G+P +PL+   +  ++ G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DQTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F    L K  +  ++L+  V       +   E       + F+
Sbjct: 60  TTVRFWPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDKRNDKE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I  ++F   T K       VE A+ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEYLNKNKNPIHPKVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH  G R A+TR +  Y +      K  IS   DD     + ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+        R+ +    R
Sbjct: 230 QTKDKLVSSEVKTAVETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIII 390


>gi|110264811|gb|ABG56981.1| DNA gyrase beta subunit [Aliivibrio fischeri]
 gi|110264813|gb|ABG56982.1| DNA gyrase beta subunit [Aliivibrio fischeri]
 gi|110264819|gb|ABG56985.1| DNA gyrase beta subunit [Aliivibrio fischeri]
 gi|110264821|gb|ABG56986.1| DNA gyrase beta subunit [Aliivibrio fischeri]
          Length = 401

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 151/411 (36%), Positives = 232/411 (56%), Gaps = 15/411 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I  Q +  G P +PL    K
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIHRAGEIHQQVYHHGEPEAPLAVIGK 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +  GT+I F P  + F +   F    L K  +  ++L+  V       +E        
Sbjct: 61  T-DTTGTKIRFWPSEETFTNVV-FVYEILAKRLRELSFLNSGVSIKLQDMRE------ED 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F + GG++ ++Q    N++ I  ++F   +E++     +VE ++ W +     I  
Sbjct: 113 KADHFMYEGGIQAFVQHLNRNKTPIHQKVFHFDSERED--GISVEVSMQWNDGFQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV + 
Sbjct: 171 FTNNIPQRDGGTHLAGFRSALTRTLNTFMDKEGFSKKAKAATSGDDAREGLTAVVSVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ +    +L +NP EA  +   +I+        R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLAENPSEAKMVCSKIIDAARAREAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDIAGLPGKLADCQEKDPGLSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDA
Sbjct: 351 KILNVEKARFDKMLSSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMTDA 401


>gi|35210325|dbj|BAC92674.1| gyrase B subunit [Alicyclobacillus pomorum]
          Length = 389

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 143/400 (35%), Positives = 215/400 (53%), Gaps = 15/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS+ L V V R   I++Q+F RG     L+   +  ++ G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSEWLKVVVYRDGKIYTQEFERGNVKYDLKVIGET-DRTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF+PDP+IF +   F A  L    +  A+L+  ++  +  ++E         +  + 
Sbjct: 60  TTVTFKPDPQIFTETTEFSADVLQNRLRELAFLNAGLEIVYEDERE-------DNQVTYC 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTIL 323
           + GG+  +++   +++ ++          K      TVE A+ + +        + N I 
Sbjct: 113 YSGGVAAFVEFLNKSKDVLHPTPVYVTGVKDDV---TVEIALQYNDGYSTTLFSFANNIH 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGG HESG + ALTR I  YA       +   ++  DD+      I+SV + EP+F G
Sbjct: 170 THEGGAHESGFKSALTRVINDYARKNNIVKENESNLTGDDVREGLTAIVSVKVPEPQFEG 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNR 440
           QTKTKL + + +  VE+   D    +  +NP  A K++E  V         R+ +    R
Sbjct: 230 QTKTKLGNSEVRGIVESLFGDKLQVFFDENPSVARKIIEKSVTAARAREAARKARELTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADCS   A  +EL++VEGDSAGGSAKQ R+R+ QA+LPLRGKI+NV 
Sbjct: 290 KNALEVSSLPGKLADCSSKDASISELYLVEGDSAGGSAKQGRDRNFQAILPLRGKIINVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +KI +NQ+I  ++ ALG      +     RY K++I
Sbjct: 350 KARLDKILSNQEIRAIITALGTGIGDDFDITKARYHKIVI 389


>gi|19909647|dbj|BAB87019.1| DNA gyrase subunit B [Serratia rubidaea]
          Length = 390

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 143/401 (35%), Positives = 223/401 (55%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS++L + + R   +  Q +S G P +PL    +   + G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGQVHEQTYSHGEPQAPLTVVGET-EQTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F+   L K  +  ++L+  V       +   E       + F+
Sbjct: 60  TTVRFWPSHQTFTNVVEFEYDILAKRLRELSFLNSGVSIRLKDKRSDKE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   +F   T K       VE A+ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEYLNKNKTPIHPNVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    R
Sbjct: 230 QTKDKLVSSEVKSAVEQQMNELLSEYLLENPGDAKIVVGKIIDAARAREAARKAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRRNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|284793877|pdb|3FV5|A Chain A, Crystal Structure Of E. Coli Topoisomerase Iv Co-Complexed
           With Inhibitor
 gi|284793878|pdb|3FV5|B Chain B, Crystal Structure Of E. Coli Topoisomerase Iv Co-Complexed
           With Inhibitor
          Length = 201

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 86/204 (42%), Positives = 119/204 (58%), Gaps = 6/204 (2%)

Query: 54  GLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNG 113
           GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V L  +  L V+D+G
Sbjct: 1   GLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDG 57

Query: 114 RGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTV 173
           RG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGISVVNALS  + V V
Sbjct: 58  RGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNV 116

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQ 232
            R   +++  F  G  +  L+      +   GT + F PD + F D   F  +RL  + +
Sbjct: 117 RRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDSPRFSVSRLTHVLK 175

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYG 256
           +KA L   V+  +  +    E+  
Sbjct: 176 AKAVLCPGVEITFKDEINNTEQRW 199


>gi|148536434|gb|ABQ85769.1| DNA gyrase subunit B [Aliivibrio salmonicida]
          Length = 402

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 156/411 (37%), Positives = 231/411 (56%), Gaps = 14/411 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R+  IF Q +  G+P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRRGEIFQQIYCHGVPQAPLAVIG- 59

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +  GT+I F P  + F +   F    L K  +  ++L+  V       +E        
Sbjct: 60  TTDTTGTKIRFWPSDQTFAN-IEFVYDILAKRLRELSFLNSGVSIRLQDMRE------ED 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F F GG+K ++     N++ +  +IF   +E+K      VE A+ W +     I  
Sbjct: 113 KSDHFMFEGGIKAFVTHLNRNKTPVHQKIFYFDSERK-EDGIVVEVAMQWNDSYQENIFC 171

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           Y N I   +GG H SG R ALTR +  + +      K   S   DD       ++SV + 
Sbjct: 172 YTNNIPQRDGGAHLSGFRSALTRTLNSFMDKEGFSKKAKSSASGDDAREGLTAVVSVKVP 231

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ +    +L +NP EA  +   +I+        R+ 
Sbjct: 232 DPKFSSQTKDKLVSSEVKSAVESAMNEKLAEFLAENPGEAKMVCSKIIDAARAREAARKA 291

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 292 REMTRRKGALDIAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 351

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDA
Sbjct: 352 KILNVEKARFDKMISSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMTDA 402


>gi|22091026|dbj|BAC06804.1| gyrase B [Enterobacter cloacae]
          Length = 390

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 147/401 (36%), Positives = 228/401 (56%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q ++ G+P +PL    +  +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQLYTHGVPQAPLAVTGET-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F+
Sbjct: 60  TMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    R
Sbjct: 230 QTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|33590328|gb|AAQ22704.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. luminescens]
          Length = 389

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 139/394 (35%), Positives = 215/394 (54%), Gaps = 15/394 (3%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD+++Y++SGGLHGVG+SVVNALS++L + + R   +  Q +  G+P SPL+   +   +
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGET-EQ 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GTR+ F P    F +   F    L K  +  ++L+  V       +   E       + 
Sbjct: 60  TGTRVRFWPSMDTFRNNTEFQHDILAKRLRELSFLNSGVSIRLIDKRTNIE-------DH 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           F++ GG+K +++   +N++ I   +F   TEK G     VE ++ W +     I  + N 
Sbjct: 113 FHYEGGIKAFVEFLNKNKTPIHPNVFYFSTEKDGI---GVEISMQWNDGFQENIYCFTNN 169

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH  G R A+TR +  Y +      K  +S   DD     V ++SV + +P+F
Sbjct: 170 IPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKF 229

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREV 438
           + QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+        R+ +   
Sbjct: 230 SSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVSKIIDAARAREAARKAREMT 289

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILN
Sbjct: 290 RRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILN 349

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           V  A  +K+ ++Q++  L+ ALGC         D
Sbjct: 350 VEKARFDKMLSSQEVATLITALGCGIGRDEYNPD 383


>gi|22090642|dbj|BAC06612.1| gyrase B [Escherichia coli]
 gi|22090648|dbj|BAC06615.1| gyrase B [Escherichia coli]
 gi|22090650|dbj|BAC06616.1| gyrase B [Escherichia coli]
 gi|22090652|dbj|BAC06617.1| gyrase B [Escherichia coli]
 gi|22090654|dbj|BAC06618.1| gyrase B [Escherichia coli]
 gi|22090656|dbj|BAC06619.1| gyrase B [Escherichia coli]
 gi|22090712|dbj|BAC06647.1| gyrase B [Escherichia coli]
 gi|22090804|dbj|BAC06693.1| gyrase B [Escherichia coli]
 gi|22090806|dbj|BAC06694.1| gyrase B [Escherichia coli]
 gi|22090808|dbj|BAC06695.1| gyrase B [Escherichia coli]
 gi|22090810|dbj|BAC06696.1| gyrase B [Escherichia coli]
 gi|22090812|dbj|BAC06697.1| gyrase B [Escherichia coli]
 gi|22090814|dbj|BAC06698.1| gyrase B [Escherichia coli]
 gi|22090816|dbj|BAC06699.1| gyrase B [Escherichia coli]
 gi|22090818|dbj|BAC06700.1| gyrase B [Escherichia coli]
 gi|22090820|dbj|BAC06701.1| gyrase B [Escherichia coli]
 gi|22090824|dbj|BAC06703.1| gyrase B [Escherichia coli]
 gi|22090826|dbj|BAC06704.1| gyrase B [Escherichia coli]
 gi|22090828|dbj|BAC06705.1| gyrase B [Escherichia coli]
 gi|22090830|dbj|BAC06706.1| gyrase B [Escherichia coli]
 gi|22090832|dbj|BAC06707.1| gyrase B [Escherichia coli]
 gi|22090834|dbj|BAC06708.1| gyrase B [Escherichia coli]
 gi|22090846|dbj|BAC06714.1| gyrase B [Escherichia coli]
 gi|22090848|dbj|BAC06715.1| gyrase B [Escherichia coli]
 gi|22090854|dbj|BAC06718.1| gyrase B [Escherichia coli]
 gi|22090864|dbj|BAC06723.1| gyrase B [Escherichia coli]
 gi|22090868|dbj|BAC06725.1| gyrase B [Escherichia coli]
 gi|22090870|dbj|BAC06726.1| gyrase B [Escherichia coli]
 gi|22090872|dbj|BAC06727.1| gyrase B [Escherichia coli]
 gi|22090874|dbj|BAC06728.1| gyrase B [Escherichia coli]
 gi|22090876|dbj|BAC06729.1| gyrase B [Escherichia coli]
 gi|22090878|dbj|BAC06730.1| gyrase B [Escherichia coli]
 gi|22090880|dbj|BAC06731.1| gyrase B [Escherichia coli]
 gi|22090884|dbj|BAC06733.1| gyrase B [Escherichia coli]
 gi|22090890|dbj|BAC06736.1| gyrase B [Escherichia coli]
 gi|22090906|dbj|BAC06744.1| gyrase B [Escherichia coli]
          Length = 390

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 145/401 (36%), Positives = 225/401 (56%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL    +     G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F+
Sbjct: 60  TMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    R
Sbjct: 230 QTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|22091032|dbj|BAC06807.1| gyrase B [Enterobacter cloacae]
          Length = 390

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 147/401 (36%), Positives = 227/401 (56%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q ++ G+P +PL       +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQLYTHGVPQAPLAVTGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F+
Sbjct: 60  TMVRFWPSHETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    R
Sbjct: 230 QTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|20387122|dbj|BAB91261.1| gyrase B [Streptomyces aureoversilis]
 gi|20387208|dbj|BAB91304.1| gyrase B [Streptomyces rectiverticillatus]
          Length = 399

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 138/401 (34%), Positives = 213/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL++ E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGYRWTQDYKLGVPTAPLQQNEAT-DEHG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  +    + ++    ++ G P    +
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLTISLTDERPAHVDEEGKPLNVRY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           ++ GG+  +++     +  +          +      +VE A+ W  +    + S+ NTI
Sbjct: 119 HYEGGISDFVRYLNSRKGEVIHPSVIDFEAEDKERMLSVEVAMQWNSQYTEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I +YA   +   ++  ++  DD+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGDDIREGLTAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+  + +    +L +NP E   ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKVVHEQLTDWLDRNPNEGADIIRKSIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  NQ+I  L+ A G      +    LRY K+I+
Sbjct: 359 EKARIDKILQNQEIQALISAFGTGVHEDFDIAKLRYHKIIL 399


>gi|145309499|dbj|BAF56647.1| DNA gyrase subunit B [Alicyclobacillus contaminans]
 gi|145309501|dbj|BAF56648.1| DNA gyrase subunit B [Alicyclobacillus contaminans]
          Length = 389

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 142/400 (35%), Positives = 218/400 (54%), Gaps = 15/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS+ L V V R   I++Q++ RG  L  L+   +  ++ G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSEWLKVVVYRDGKIYTQEYERGNVLYDLKVIGET-DRTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF+PDP+IF +   F +  L    +  A+L+  ++  +  ++E        ++  + 
Sbjct: 60  TTVTFKPDPEIFTETTEFSSDILQSRLRELAFLNAGLEIVYEDERE-------DKQVTYC 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTIL 323
           + GG+  +++   +++ ++          +      TVE A+ + +   +    + N I 
Sbjct: 113 YSGGVAAFVEYLNKSKDVLHPTPVYVTGVRDDV---TVEIALQYNDGYSQTLFSFANNIH 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAG 381
           T EGG+HESG + ALTR I  YA      +     +  DD+      I+SV + EP+F G
Sbjct: 170 THEGGSHESGFKSALTRVINDYARKNNLVKDNEDKLTGDDVREGLTAIVSVKVPEPQFEG 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNR 440
           QTKTKL + + +  VE+   D    +  +NP  A K++E  V         R+ +    R
Sbjct: 230 QTKTKLGNSEVRGIVESLFADKLQIFFDENPSVARKIVEKSVTAARAREAARKARELTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADCS   A  +EL++VEGDSAGGSAKQ R+R+ QA+LPLRGKI+NV 
Sbjct: 290 KNALEVSSLPGKLADCSSKDASVSELYLVEGDSAGGSAKQGRDRNFQAILPLRGKIINVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +KI +NQ+I  ++ ALG      +     RY KV+I
Sbjct: 350 KARLDKILSNQEIRAIITALGTGIGDDFDITKARYHKVVI 389


>gi|126035270|gb|ABN72388.1| gyrase B subunit [Enterobacter cloacae]
          Length = 389

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 148/400 (37%), Positives = 226/400 (56%), Gaps = 16/400 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS +L + + R+  I  Q ++ G+P +PL       +K GT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYTHGVPQAPLAVTGDT-DKTGTM 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ 
Sbjct: 60  VRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDNKE-------DHFHYE 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   
Sbjct: 113 GGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQR 169

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QT
Sbjct: 170 DGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQT 229

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKT 442
           K KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    RK 
Sbjct: 230 KDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKG 289

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 ALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 349

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIM 541
             +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIM
Sbjct: 350 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIM 389


>gi|20387152|dbj|BAB91276.1| gyrase B [Streptomyces roseoverticillatus subsp. melrosporus]
 gi|308152551|dbj|BAJ22254.1| DNA gyrase subunit B [Streptomyces roseoverticillatus]
          Length = 399

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 139/401 (34%), Positives = 214/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL+K E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGFRWTQDYKLGVPTAPLQKNEPT-DEHG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  +    + ++    ++ G P    +
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLTISLTDERPAHVDEEGKPLTVRY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           ++ GG+  +++     +  +          +      ++E A+ W  +    + S+ NTI
Sbjct: 119 HYEGGISDFVRYLNSRKGEVIHPTVIDFEAEDKERMLSLEVAMQWNTQYTEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I +YA   +   ++  ++  DD+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGDDIREGLTAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+  + +    +L +NP EA  ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKVVHEQLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  NQ+I  L+ A G      +    LRY K+I+
Sbjct: 359 EKARIDKILQNQEIQALISAFGTGVHEDFDIAKLRYHKIIL 399


>gi|164690651|dbj|BAF98609.1| gyrase B [Sporolactobacillus laevolacticus]
          Length = 385

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 149/396 (37%), Positives = 219/396 (55%), Gaps = 15/396 (3%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG SVVNALS ++ V V     ++ Q++ RG P++ L+       + GT   
Sbjct: 1   KVSGGLHGVGASVVNALSTKMWVKVYLNGHVYYQEYRRGKPVADLKIIGD-SERTGTTTH 59

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F PDP+IF +   FD   L    +  A+L+  ++      +E  +K      E F++ GG
Sbjct: 60  FEPDPEIFTETTIFDYDTLRVRVRELAFLNKNIRISIEDKREEDKK------ETFHYEGG 113

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEG 327
           +++Y++    ++ +I   I   + EK G     VE A+ +          + N I T EG
Sbjct: 114 IRSYVEFLNRSKEVIHQPIDL-EGEKDGI---KVEIAMQYNSGFSSQLYSFANNIHTHEG 169

Query: 328 GTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTHE G +VALTR I  YA   Q  +    ++  DD+      I+SV   +P+F GQTKT
Sbjct: 170 GTHEYGFKVALTRVINDYARKKQFIKSSDANLTGDDVREGLTAIVSVKHPDPQFEGQTKT 229

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444
           KL + + +   +    + F  +L++NP  A  ++E  I  S  R   +K RE   RK+++
Sbjct: 230 KLGNSEVRTITDTLFTESFSRFLLENPDVAKLIVEKGIVASRARTAAKKARELTRRKSSL 289

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADCS   A  +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKI+NV  A  
Sbjct: 290 EISSLPGKLADCSSKDASISELYIVEGDSAGGSAKQGRDRMFQAILPLRGKIINVEKARL 349

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +KI +N +I  ++ ALG     ++  E  RY K+II
Sbjct: 350 DKILSNAEIRAMITALGTGIGDEFTLEKARYHKIII 385


>gi|41387044|gb|AAS01480.1| GyrB [Bacillus sp. H-03]
          Length = 390

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 145/400 (36%), Positives = 220/400 (55%), Gaps = 14/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS EL V V R+  I  QK+ RGIP++ L+      ++ G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTELEVFVHREGKIHHQKYERGIPVADLKVIGDT-DQTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F+PDP+IF +   ++   L    +  A+L+  +K      +E  +K      +EF+
Sbjct: 60  TITRFKPDPEIFQETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFH 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+K+Y++    ++  I  E    +  K G     VE ++ + E       S+ N I 
Sbjct: 114 YEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIH 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G + ALTR I  Y       +    ++  +D+      I+S+    P+F G
Sbjct: 171 TYEGGTHEVGFKTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNR 440
           QTKTKL + +A+   E+   + F+ +L++NP  A K++E   +        ++ +    R
Sbjct: 231 QTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV 
Sbjct: 291 KSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +KI +N ++  ++ A+G      +  E  RY KVII
Sbjct: 351 KARLDKILSNDEMRTIITAIGTNIGGDFDIEKARYHKVII 390


>gi|22090646|dbj|BAC06614.1| gyrase B [Escherichia coli]
 gi|22090658|dbj|BAC06620.1| gyrase B [Escherichia coli]
 gi|22090660|dbj|BAC06621.1| gyrase B [Escherichia coli]
 gi|22090664|dbj|BAC06623.1| gyrase B [Escherichia coli]
 gi|22090666|dbj|BAC06624.1| gyrase B [Escherichia coli]
 gi|22090668|dbj|BAC06625.1| gyrase B [Escherichia coli]
 gi|22090670|dbj|BAC06626.1| gyrase B [Escherichia coli]
 gi|22090672|dbj|BAC06627.1| gyrase B [Escherichia coli]
 gi|22090674|dbj|BAC06628.1| gyrase B [Escherichia coli]
 gi|22090676|dbj|BAC06629.1| gyrase B [Escherichia coli]
 gi|22090678|dbj|BAC06630.1| gyrase B [Escherichia coli]
 gi|22090680|dbj|BAC06631.1| gyrase B [Escherichia coli]
 gi|22090682|dbj|BAC06632.1| gyrase B [Escherichia coli]
 gi|22090684|dbj|BAC06633.1| gyrase B [Escherichia coli]
 gi|22090686|dbj|BAC06634.1| gyrase B [Escherichia coli]
 gi|22090688|dbj|BAC06635.1| gyrase B [Escherichia coli]
 gi|22090690|dbj|BAC06636.1| gyrase B [Escherichia coli]
 gi|22090692|dbj|BAC06637.1| gyrase B [Escherichia coli]
 gi|22090694|dbj|BAC06638.1| gyrase B [Escherichia coli]
 gi|22090696|dbj|BAC06639.1| gyrase B [Escherichia coli]
 gi|22090698|dbj|BAC06640.1| gyrase B [Escherichia coli]
 gi|22090700|dbj|BAC06641.1| gyrase B [Escherichia coli]
 gi|22090702|dbj|BAC06642.1| gyrase B [Escherichia coli]
 gi|22090704|dbj|BAC06643.1| gyrase B [Escherichia coli]
 gi|22090706|dbj|BAC06644.1| gyrase B [Escherichia coli]
 gi|22090708|dbj|BAC06645.1| gyrase B [Escherichia coli]
 gi|22090710|dbj|BAC06646.1| gyrase B [Escherichia coli]
 gi|22090714|dbj|BAC06648.1| gyrase B [Escherichia coli]
 gi|22090716|dbj|BAC06649.1| gyrase B [Escherichia coli]
 gi|22090718|dbj|BAC06650.1| gyrase B [Escherichia coli]
 gi|22090720|dbj|BAC06651.1| gyrase B [Escherichia coli]
 gi|22090724|dbj|BAC06653.1| gyrase B [Escherichia coli]
 gi|22090726|dbj|BAC06654.1| gyrase B [Escherichia coli]
 gi|22090728|dbj|BAC06655.1| gyrase B [Escherichia coli]
 gi|22090730|dbj|BAC06656.1| gyrase B [Escherichia coli]
 gi|22090732|dbj|BAC06657.1| gyrase B [Escherichia coli]
 gi|22090734|dbj|BAC06658.1| gyrase B [Escherichia coli]
 gi|22090736|dbj|BAC06659.1| gyrase B [Escherichia coli]
 gi|22090738|dbj|BAC06660.1| gyrase B [Escherichia coli]
 gi|22090740|dbj|BAC06661.1| gyrase B [Escherichia coli]
 gi|22090742|dbj|BAC06662.1| gyrase B [Escherichia coli]
 gi|22090744|dbj|BAC06663.1| gyrase B [Escherichia coli]
 gi|22090746|dbj|BAC06664.1| gyrase B [Escherichia coli]
 gi|22090748|dbj|BAC06665.1| gyrase B [Escherichia coli]
 gi|22090750|dbj|BAC06666.1| gyrase B [Escherichia coli]
 gi|22090752|dbj|BAC06667.1| gyrase B [Escherichia coli]
 gi|22090754|dbj|BAC06668.1| gyrase B [Escherichia coli]
 gi|22090756|dbj|BAC06669.1| gyrase B [Escherichia coli]
 gi|22090758|dbj|BAC06670.1| gyrase B [Escherichia coli]
 gi|22090760|dbj|BAC06671.1| gyrase B [Escherichia coli]
 gi|22090762|dbj|BAC06672.1| gyrase B [Escherichia coli]
 gi|22090764|dbj|BAC06673.1| gyrase B [Escherichia coli]
 gi|22090768|dbj|BAC06675.1| gyrase B [Escherichia coli]
 gi|22090770|dbj|BAC06676.1| gyrase B [Escherichia coli]
 gi|22090772|dbj|BAC06677.1| gyrase B [Escherichia coli]
 gi|22090774|dbj|BAC06678.1| gyrase B [Escherichia coli]
 gi|22090776|dbj|BAC06679.1| gyrase B [Escherichia coli]
 gi|22090778|dbj|BAC06680.1| gyrase B [Escherichia coli]
 gi|22090780|dbj|BAC06681.1| gyrase B [Escherichia coli]
 gi|22090782|dbj|BAC06682.1| gyrase B [Escherichia coli]
 gi|22090784|dbj|BAC06683.1| gyrase B [Escherichia coli]
 gi|22090786|dbj|BAC06684.1| gyrase B [Escherichia coli]
 gi|22090788|dbj|BAC06685.1| gyrase B [Escherichia coli]
 gi|22090790|dbj|BAC06686.1| gyrase B [Escherichia coli]
 gi|22090794|dbj|BAC06688.1| gyrase B [Escherichia coli]
 gi|22090796|dbj|BAC06689.1| gyrase B [Escherichia coli]
 gi|22090798|dbj|BAC06690.1| gyrase B [Escherichia coli]
 gi|22090800|dbj|BAC06691.1| gyrase B [Escherichia coli]
 gi|22090802|dbj|BAC06692.1| gyrase B [Escherichia coli]
 gi|22090822|dbj|BAC06702.1| gyrase B [Escherichia coli]
 gi|22090836|dbj|BAC06709.1| gyrase B [Escherichia coli]
 gi|22090838|dbj|BAC06710.1| gyrase B [Escherichia coli]
 gi|22090840|dbj|BAC06711.1| gyrase B [Escherichia coli]
 gi|22090842|dbj|BAC06712.1| gyrase B [Escherichia coli]
 gi|22090844|dbj|BAC06713.1| gyrase B [Escherichia coli]
 gi|22090850|dbj|BAC06716.1| gyrase B [Escherichia coli]
 gi|22090852|dbj|BAC06717.1| gyrase B [Escherichia coli]
 gi|22090856|dbj|BAC06719.1| gyrase B [Escherichia coli]
 gi|22090858|dbj|BAC06720.1| gyrase B [Escherichia coli]
 gi|22090860|dbj|BAC06721.1| gyrase B [Escherichia coli]
 gi|22090862|dbj|BAC06722.1| gyrase B [Escherichia coli]
 gi|22090882|dbj|BAC06732.1| gyrase B [Escherichia coli]
 gi|22090886|dbj|BAC06734.1| gyrase B [Escherichia coli]
 gi|22090888|dbj|BAC06735.1| gyrase B [Escherichia coli]
 gi|22090892|dbj|BAC06737.1| gyrase B [Escherichia coli]
 gi|22090894|dbj|BAC06738.1| gyrase B [Escherichia coli]
 gi|22090896|dbj|BAC06739.1| gyrase B [Escherichia coli]
 gi|22090898|dbj|BAC06740.1| gyrase B [Escherichia coli]
 gi|22090900|dbj|BAC06741.1| gyrase B [Escherichia coli]
 gi|22090902|dbj|BAC06742.1| gyrase B [Escherichia coli]
 gi|22090908|dbj|BAC06745.1| gyrase B [Escherichia coli]
 gi|22090960|dbj|BAC06771.1| gyrase B [Shigella boydii]
 gi|22090962|dbj|BAC06772.1| gyrase B [Shigella boydii]
 gi|22090964|dbj|BAC06773.1| gyrase B [Shigella boydii]
 gi|22090966|dbj|BAC06774.1| gyrase B [Shigella flexneri]
 gi|22090968|dbj|BAC06775.1| gyrase B [Shigella flexneri]
 gi|22090970|dbj|BAC06776.1| gyrase B [Shigella flexneri]
 gi|22090972|dbj|BAC06777.1| gyrase B [Shigella flexneri]
 gi|22090974|dbj|BAC06778.1| gyrase B [Shigella flexneri]
 gi|22090976|dbj|BAC06779.1| gyrase B [Shigella flexneri]
 gi|22090978|dbj|BAC06780.1| gyrase B [Shigella flexneri]
 gi|22090980|dbj|BAC06781.1| gyrase B [Shigella flexneri]
 gi|22090982|dbj|BAC06782.1| gyrase B [Shigella flexneri]
 gi|22090984|dbj|BAC06783.1| gyrase B [Shigella flexneri]
 gi|22090986|dbj|BAC06784.1| gyrase B [Shigella flexneri]
 gi|22090988|dbj|BAC06785.1| gyrase B [Shigella flexneri]
 gi|22090990|dbj|BAC06786.1| gyrase B [Shigella flexneri]
 gi|22090992|dbj|BAC06787.1| gyrase B [Shigella flexneri]
 gi|22090994|dbj|BAC06788.1| gyrase B [Shigella flexneri]
 gi|22090996|dbj|BAC06789.1| gyrase B [Shigella sonnei]
 gi|22090998|dbj|BAC06790.1| gyrase B [Shigella sonnei]
 gi|22091000|dbj|BAC06791.1| gyrase B [Shigella sonnei]
 gi|22091002|dbj|BAC06792.1| gyrase B [Shigella sonnei]
 gi|22091004|dbj|BAC06793.1| gyrase B [Shigella sonnei]
 gi|22091006|dbj|BAC06794.1| gyrase B [Shigella sonnei]
 gi|22091008|dbj|BAC06795.1| gyrase B [Shigella sonnei]
 gi|22091010|dbj|BAC06796.1| gyrase B [Shigella sonnei]
 gi|22091012|dbj|BAC06797.1| gyrase B [Shigella sonnei]
 gi|22091014|dbj|BAC06798.1| gyrase B [Shigella sonnei]
 gi|22091016|dbj|BAC06799.1| gyrase B [Shigella sonnei]
 gi|22091018|dbj|BAC06800.1| gyrase B [Shigella sonnei]
 gi|116734150|gb|ABK20137.1| gyraseB [Shigella boydii]
          Length = 390

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 145/401 (36%), Positives = 225/401 (56%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL    +     G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F+
Sbjct: 60  TMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    R
Sbjct: 230 QTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|22090722|dbj|BAC06652.1| gyrase B [Escherichia coli]
          Length = 390

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 145/401 (36%), Positives = 225/401 (56%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL    +     G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F+
Sbjct: 60  TMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    R
Sbjct: 230 QTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARSREAARRAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|211927053|dbj|BAG82779.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 390

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 143/401 (35%), Positives = 227/401 (56%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L +T+ R+  +  Q +  G+P +PL    +  +  G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELTIRREGKVHQQIYVHGVPQAPLAVTGET-DITG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           TR+ F P  + F +   F+   L K  +  ++L+  V       ++        + + F+
Sbjct: 60  TRVRFWPSHETFTNVRDFEYDILAKRLRELSFLNSGVSIRLDDKRD-------GKSDHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG++ +++   +N++ I   +F   TEK G     VE A+ W +     I  + N I 
Sbjct: 113 YEGGIRAFVEYLNKNKTPIHPTVFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R A+TR +  Y E      K  +S   DD     + ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRSAMTRTLNAYMEKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    R
Sbjct: 230 QTKDKLVSSEVKTAVEQQMNELLAEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +E+++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+  +Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 KARFDKMLASQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|194477391|gb|ACF74792.1| DNA gyrase subunit B [Halorubrum lipolyticum]
          Length = 407

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 151/410 (36%), Positives = 222/410 (54%), Gaps = 11/410 (2%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP---LEKKEKVRNKR 203
           +Y++SGGLHGVG+SVVNALS+ L V V R   ++  +F+RG P        +      + 
Sbjct: 2   SYQVSGGLHGVGVSVVNALSERLEVEVKRDGGVYRHEFARGEPAEDGFERVRDMDDGEET 61

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT I F PD ++F     F+ + L    +  A+L+  V      ++         ++E F
Sbjct: 62  GTYIRFWPDDEVFETT-AFEFSTLANRLRELAFLNSGVAVSLVDERGADADDDTGDEETF 120

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTI 322
            + GG++ ++    E R+ I  E+   + E    H   VE A+   EE    + ++ N I
Sbjct: 121 RYEGGIREFVGYLNETRTPIHEEVIYFEDEADDIH---VEVAMQATEELQGSVHAFANNI 177

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTH +G + ALTR +  YA           ++  +D+      ++SV   +P+F 
Sbjct: 178 NTREGGTHLTGFKTALTRTVNDYANEHGLVDDLDANLKGEDVREGLTAVISVKHPDPQFE 237

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VN 439
           GQTKTKL + + +  VE+A  +    +  +NP  A K++    E +  R   +K  E   
Sbjct: 238 GQTKTKLGNSEVRGIVESATHEKLGTFFEENPDTARKVVHKAAEAARARKAAKKAEELTR 297

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK+A+    LPGKLADC        ELF+VEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 298 RKSALESTALPGKLADCQTRDPTEAELFVVEGDSAGGSAKQGRNRENQAILPLKGKILNV 357

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549
                ++I  N +I  L+ A+G     ++  +D+RY K+IIMTDADVDGA
Sbjct: 358 EKHRLDRILENDEIRALITAIGAGIGEEFDIDDVRYNKIIIMTDADVDGA 407


>gi|148793394|gb|ABR12761.1| DNA gyrase beta subunit [Photobacterium kishitanii]
          Length = 397

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 148/406 (36%), Positives = 236/406 (58%), Gaps = 14/406 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+++ +T+ R+  I  Q +  G+P +PL       +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKVELTINRKGHIHQQSYHHGVPDAPLAVIGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           TR+ F P  + F +   F    L K  +  ++L+  V      ++E        +++ F 
Sbjct: 60  TRLRFWPSEETFTNNLEFQYEILAKRLRELSFLNSGVSIRLIDERE------EGKQDHFM 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG++ +++    N++ I  ++F   +E++     TVE A+ W +     +  + N I 
Sbjct: 114 YEGGIRAFVEHLNRNKTPIHQKVFHFDSERED--GITVEVAMQWNDGFQEGVYCFTNNIP 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  + +      K   +   DD     + ++SV + +P+F+ 
Sbjct: 172 QRDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLIAVVSVKVPDPKFSS 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE+A+ + F  +L+++P +A  +   +I+ S  R   RK R    R
Sbjct: 232 QTKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKAREMTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 292 KGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
            A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDAD
Sbjct: 352 KARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDAD 397


>gi|84310530|gb|ABC55413.1| DNA gyrase subunit B [Bacillus subtilis]
          Length = 390

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 147/399 (36%), Positives = 218/399 (54%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            S Y+   GLHGV  SVVNALS EL VTV R   I  Q + RG+P++ LE   +  +  G
Sbjct: 1   GSGYKYPAGLHGVSASVVNALSTELDVTVHRDGKIHRQTYKRGVPVTDLEIIGET-DHTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F PDP+IF +   +D   L    +  A+L+  V       +E  E+        ++
Sbjct: 60  TTTHFVPDPEIFSETTEYDYDLLANRVRELAFLTKGVNITIEDKREGQERKNE-----YH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K+Y++    ++ ++  E    + EK G    TVE A+ + +     I S+ N I 
Sbjct: 115 YEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNIN 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G +  LTR I  YA      +    ++  DD+      I+S+   +P+F G
Sbjct: 172 TYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + +A+   +       + ++++NP  A K+++  +  +  R+  +K RE   R
Sbjct: 232 QTKTKLGNSEARTITDTLFSTAMETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 292 KSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
            A  +KI +N ++  ++ ALG      +  E  RY KV+
Sbjct: 352 KARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVV 390


>gi|163256332|dbj|BAF95676.1| DNA gyrase subunit B [Mesorhizobium loti]
          Length = 269

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 99/279 (35%), Positives = 153/279 (54%), Gaps = 11/279 (3%)

Query: 82  IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141
           +DN +DE +AG+A  ++V L+ +  +TV D+GRGIPV+ H K    S  E+I+T LHAGG
Sbjct: 1   VDNEIDEALAGHATRVDVVLNADNSVTVRDDGRGIPVDIH-KGEGISAAEVIMTQLHAGG 59

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD ++Y++SGGLHGVG+SVVNALS +L + + R +     +F+ G  ++PL+       
Sbjct: 60  KFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHGDAVAPLKVVGDAPG 119

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           KRGT +TF    + F +   +D A L    +  A+L+  V    S  +   EK      E
Sbjct: 120 KRGTEVTFLASTETFKN-IEYDFATLEHRLRELAFLNSGVNIALSDMRHAVEKR-----E 173

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCN 320
           E ++ GG++ +++    N+  +       ++E  G     VE A+ W +   E    + N
Sbjct: 174 EMHYSGGVEEFVKYLDRNKKALVPTPIMVRSEANGI---GVEAALWWNDSYHENVLCFTN 230

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359
            I   +GGTH +G R ALTR +  YAE    K  I++  
Sbjct: 231 NIPQRDGGTHLAGFRGALTRQVNGYAEANAKKEKIALTG 269


>gi|22090792|dbj|BAC06687.1| gyrase B [Escherichia coli]
          Length = 390

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 145/401 (36%), Positives = 225/401 (56%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL    +     G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F+
Sbjct: 60  TMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    R
Sbjct: 230 QTKDKLVSSEVKSAVEQQMNELLAEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|86169569|gb|ABC87024.1| DNA gyrase subunit B [Fructobacillus fructosus KCTC 3544]
          Length = 393

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 143/401 (35%), Positives = 216/401 (53%), Gaps = 13/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKR 203
              Y++SGGLHGVG SVVNALS  L V V R   ++   F  G +     +K   +  +R
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTSLDVQVVRDGQLYYMDFQTGRVKTGMTKKSGPLPIER 60

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F+PDP IF +   F+   LL   +  A+L+  ++   + ++        P  E F
Sbjct: 61  GTIVHFKPDPDIFQETTIFNYQTLLSRVRELAFLNKGLRISITDNR-----PDEPVSESF 115

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTI 322
           +F GG+K Y+    E + ++  +    + E+ G     VE A+ +  E    + ++ N I
Sbjct: 116 HFEGGIKEYVSYLDEGKQVLFDQPVYVEGEENGI---VVEVALQYTTEIKENLKTFTNNI 172

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE+G + ALTR I  YA   +  +    S+  +D+      I+S+   +P F 
Sbjct: 173 NTYEGGTHETGFKTALTRVINDYARKQKMIKENGESLTGEDVREGMTAIVSIKHPDPPFE 232

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + DA++ V+      F  ++++NP  A +++E      + RL  ++ RE+  
Sbjct: 233 GQTKTKLGNSDARQAVDRMFSGTFSRFMLENPTVAKQIVEKGTLAQKARLSAKRAREMTR 292

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           R++ +    LPGKLAD +      +ELFIVEGDSAGGSAKQ RNR  QA+LP+RGKILNV
Sbjct: 293 RQSGLEISNLPGKLADNTSKDPEISELFIVEGDSAGGSAKQGRNRLTQAILPIRGKILNV 352

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +++  N++I  L  ALG      +      Y K+II
Sbjct: 353 GKASLDRVLANEEIRSLFTALGAGFGDDFNVGKANYHKIII 393


>gi|84310492|gb|ABC55394.1| DNA gyrase subunit B [Bacillus atrophaeus]
          Length = 390

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 147/399 (36%), Positives = 218/399 (54%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            S Y++SGGLHGVG SVVNALS  L VTV R   I  Q + RG+P++ +E   +  +  G
Sbjct: 1   GSGYKVSGGLHGVGASVVNALSTTLDVTVHRDGKIHYQAYERGVPMADVEVIGET-DTTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F PDP+IF +   +D   L    +  A+L+  VK      +E  E+        + 
Sbjct: 60  TITHFVPDPEIFTETTVYDYDLLSSRVRELAFLTKGVKITIEDKREEKEQKNE-----YC 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K+Y++    ++ ++  E    +  K G    TVE A+ + +     I S+ N I 
Sbjct: 115 YEGGIKSYVEYLNRSKEVVHEEPIYIEGTKDGI---TVEVALQYNDSYTSNIYSFANNIN 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G +  LTR I  YA      +    ++  DD+      I+S+   +P+F G
Sbjct: 172 TYEGGTHEAGFKTGLTRVINDYARKKGIFKESDPNLSGDDVREGLTAIISIKHPDPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNR 440
           QTKTKL + +A+   +    +  + +L +NP  A K+++  +  +  R+  +K      R
Sbjct: 232 QTKTKLGNSEARTITDALFSEALETFLFENPDSARKVIDKGLMAARARMAAKKARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 292 KSALEISNLPGKLADCSSKDPGISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
            A  +KI +N ++  ++ ALG      +  E  RY KV+
Sbjct: 352 KARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVV 390


>gi|20387176|dbj|BAB91288.1| gyrase B [Streptomyces sp. IFO 13422]
 gi|308152557|dbj|BAJ22257.1| DNA gyrase subunit B [Streptomyces luteireticuli]
          Length = 399

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 139/401 (34%), Positives = 214/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL+K E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVRTDGFRWTQDYKLGVPTAPLQKNEAT-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  +    + ++ +  ++ G      +
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLTISLTDERPDHVDEEGKALTVRY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTI 322
           ++ GG+  ++      +  +          +      ++E A+ W  +  E + S+ NTI
Sbjct: 119 HYEGGISDFVTYLNSRKGELIHPTVISFEAEDKERMLSLEVAMQWNSQYSEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I +YA   +   ++  ++  DD+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGDDIREGLTAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+  + +    +L +NP EA  ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKVVHEQLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPEYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  NQ+I  L+ A G      +    LRY K+I+
Sbjct: 359 EKARIDKILQNQEIQALISAFGTGVHEDFDISKLRYHKIIL 399


>gi|308153112|dbj|BAJ22145.1| DNA gyrase subunit B [unidentified Actinobacteria KK10206C]
          Length = 406

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 130/406 (32%), Positives = 207/406 (50%), Gaps = 13/406 (3%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y +SGGLHGVG SVVNALS    V V ++  ++   F+ G       ++ +  ++ GT I
Sbjct: 1   YAVSGGLHGVGSSVVNALSTRFEVEVKQKGYVWRHSFADGGTPQQSLEQGEATDETGTTI 60

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE-------- 259
           TF PD  IF +   FD   L    Q  A+L+  ++   S ++  +      +        
Sbjct: 61  TFWPDATIFTETVEFDYDTLRTRFQQMAFLNKGLRISLSDERPASAYEIEEDGALVSKQP 120

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITS 317
            ++F +  GL  Y++   + R            E +    + ++E A+ W       + +
Sbjct: 121 SDDFLYERGLVDYVEYLNKVRKTEPVSEEIIDFESEDTERKISLEVAMQWTTSYNENVFT 180

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           Y NTI T EGGTHE G R ALT  + +YA       ++  ++  DD+      ++S+ + 
Sbjct: 181 YANTINTHEGGTHEEGFRAALTSLVNRYARANNLLKEKDDNLSGDDVREGLTAVISIKLG 240

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           EP+F GQTKTKL + +A+  V+  + +    +L +NP +A  ++   I+ +  RL  RK 
Sbjct: 241 EPQFEGQTKTKLGNTEAKTFVQKIVNEQLGDWLDRNPTQAKNVIRKAIDAATARLAARKA 300

Query: 436 REVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE  R+ +      +P KL DC+      +E+F+VEGDSAGGSA Q R+   QA+L LRG
Sbjct: 301 RETARRKSVFESAAMPDKLKDCTSKDPSISEIFLVEGDSAGGSAVQGRDPHTQAILALRG 360

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           KILNV  A  +K   N+++  ++QA G      +  E  RY K+++
Sbjct: 361 KILNVERARLDKALANKEVQAMIQAFGTGIGEDFDIEKARYHKIVL 406


>gi|22090866|dbj|BAC06724.1| gyrase B [Escherichia coli]
          Length = 390

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 145/401 (36%), Positives = 225/401 (56%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL    +     G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F+
Sbjct: 60  TMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    R
Sbjct: 230 QTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKFVVGKIIDAARAREAARRAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|68445356|dbj|BAE03179.1| DNA gyrase subunit B [actinobacterium Aac-57]
          Length = 399

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 131/401 (32%), Positives = 216/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG SVVNALS+ L V V     +++Q++ RG+P +PL+K  +  ++ G
Sbjct: 1   GGGYAVSGGLHGVGSSVVNALSNRLTVAVKTDGHLWTQEYLRGVPTAPLKK-GEAVDETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D +IF     ++   L +  Q  A+L+  V      ++ E  ++ G      +
Sbjct: 60  TTVTFWADDEIFETTT-YNFETLSRRFQEMAFLNRGVSIELIDERPEYKDEEGNARSVHY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG+  +++     +  +          +    + + E A+ W  +    + ++ N I
Sbjct: 119 KYDGGISDFVKHLNAAKGEMVHPQVIEFGAEDKERKISAEVALQWNNQYSESVYTFANVI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
            T +GGTHE G R ALT  + +YA+  Q   ++  ++  +D+    V I+SV + EP+F 
Sbjct: 179 QTPDGGTHEEGFRSALTNVVNRYAKEKQLLKEKDDNLSGEDIREGLVAIVSVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTK KL + +A+  V+    +    +  +NP EA  ++   I+ +  R+  RK RE+ R
Sbjct: 239 GQTKAKLGNTEARTFVQKITYESMADWFDRNPNEAKDIIRKSIQAATARIAARKARELTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +   + LPGKL+DC        E+F+VEGDSAGGSAKQ R+   QA++P+RGKILNV
Sbjct: 299 RKGLLESMALPGKLSDCQSTNPVECEIFVVEGDSAGGSAKQGRDPRVQAIMPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +K+  N ++  L+ ALG      +    LRY K+++
Sbjct: 359 EKARIDKVLQNTEVQGLISALGTGIHDDFDVSRLRYHKIVL 399


>gi|145309495|dbj|BAF56645.1| DNA gyrase subunit B [Alicyclobacillus shizuokensis]
          Length = 389

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 143/400 (35%), Positives = 224/400 (56%), Gaps = 15/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS+ L V V R   +  Q++ RG+PL  L+      +  G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSEWLRVEVHRDGKVHVQEYERGVPLYDLKVVG-TTDHTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T ++FRPDP+IF +   F +  L    +  A+L+  ++  ++ ++E        +   + 
Sbjct: 60  TIVSFRPDPQIFTETTEFQSDILQGRLRELAFLNAGLEIVYNDERE-------GKSRTYC 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTIL 323
           + GG+  +++   +++ ++  +    K  ++     +VE A+ + +    +   + N I 
Sbjct: 113 YSGGVAEFVRFLNKSKDVLHDDPVFVKGVRQDV---SVEIALQYNDGYAAVLYSFANNIH 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAG 381
           T EGG+HE+G + ALTR I  YA      +    ++  DD+      I+SV + +P+F G
Sbjct: 170 THEGGSHEAGFKAALTRVINDYARKMNLLKNNESNLTGDDVREGLTAIVSVKVPDPQFEG 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + + +  V+    D F  +L QNP  A K+++  I  +  R   RK RE   R
Sbjct: 230 QTKTKLGNSEVRGIVDGLFADKFYAFLEQNPSVARKIVDKSITAARAREAARKAREVTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS   A   EL+IVEGDSAGGSAKQ R+R+ QA+LPLRGKI+NV 
Sbjct: 290 KSALEVSSLPGKLADCSSKDASVCELYIVEGDSAGGSAKQGRDRNFQAILPLRGKIINVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +KI +N +I  ++ A+G     ++     RY K++I
Sbjct: 350 KARLDKILSNAEIRSIITAIGTGIGDEFDIAKARYHKIVI 389


>gi|145309497|dbj|BAF56646.1| DNA gyrase subunit B [Alicyclobacillus macrosporangiidus]
          Length = 389

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 141/400 (35%), Positives = 219/400 (54%), Gaps = 15/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS+ + V V R   I+ Q++ RG  +  L+   +  +K G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSEWMKVEVHRDGKIYVQEYQRGEVMYDLKVIGET-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+++F+PDP+IF +   FD+  L    +  A+L+  ++     ++E        ++  ++
Sbjct: 60  TKVSFKPDPEIFTETTTFDSEVLQNRLRELAFLNAGLEIVLEDERE-------DKRYVYH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTIL 323
           + GG+  +++     + ++ SE       K      TVE A+ + E        + N I 
Sbjct: 113 YTGGVAEFVKFLNRTKDVLHSEPVFVSGVKD---EVTVEIALQYNEGYSTTLFSFANNIH 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAG 381
           T EGG HE+G + ALTR I  Y       +    +   DD+      I+SV + EP+F G
Sbjct: 170 THEGGAHEAGFKTALTRVINDYGRKMNLIKENESNPTGDDVREGLTAIVSVKVPEPQFEG 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + + +  V+    + F  +L +NP  A ++++  +  +  R   RK RE   R
Sbjct: 230 QTKTKLGNSEVRGIVDGLFSERFQAFLEENPAVAKRIVDKCLTAARAREAARKARELTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADC+   A   EL++VEGDSAGGSAKQ R+R+ QA+LPLRGKI+NV 
Sbjct: 290 KSALEVSSLPGKLADCASKDASVCELYLVEGDSAGGSAKQGRDRNFQAILPLRGKIINVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +KI +N +I  ++ ALG      +     RY K++I
Sbjct: 350 KARLDKILSNNEIRAIITALGTGIGDDFDITKARYHKIVI 389


>gi|315940107|gb|ADU56232.1| DNA gyrase subunit B [Nocardia harenae]
          Length = 408

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 123/369 (33%), Positives = 203/369 (55%), Gaps = 11/369 (2%)

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PE 314
              +   +++PGGL+ +++     +  I + +     +  G     +E A+ W       
Sbjct: 43  HKVKTRTYHYPGGLEDFVRHINRTKQPIHNSVVGFTGKGTGH---ELEVAMQWNSGYSES 99

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSV 372
           + ++ NTI T EGGTHE G R ALT  + +YA+  +  +    ++  DD+      I+SV
Sbjct: 100 VHTFANTINTHEGGTHEEGFRAALTTVVNRYAKDKKLLKEKDGNLTGDDIREGLAAIVSV 159

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
            + EP+F GQTKTKL + + +  V+    +   H+   NP +A  +++  +  ++ R+  
Sbjct: 160 KVGEPQFEGQTKTKLGNTEVKSFVQKTCNEHLQHWFEANPADAKTIVQKAVSSAQARVAA 219

Query: 433 RKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LP
Sbjct: 220 RKARELVRRKSATDLGGLPGKLADCRSKDPQKSEIYIVEGDSAGGSAKSGRDSMYQAILP 279

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHI 551
           +RGKI+NV  A  +++  N ++  ++ A G     ++    LRY K+++M DADVDG HI
Sbjct: 280 IRGKIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYHKIVLMADADVDGQHI 339

Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKG 610
           ++LLLT  ++ M  L+E  H++L  PPL+++     ++ +A+ +  +  +LE     GK 
Sbjct: 340 STLLLTLLFRFMRPLVEHGHVYLAQPPLYKLKWQRGEAEFAYSDRERDGLLEAGLAAGKK 399

Query: 611 KIE---ISR 616
             +   I R
Sbjct: 400 INKDDGIQR 408


>gi|237717123|ref|ZP_04547604.1| DNA topoisomerase IV subunit B [Bacteroides sp. D1]
 gi|229443106|gb|EEO48897.1| DNA topoisomerase IV subunit B [Bacteroides sp. D1]
          Length = 449

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 129/483 (26%), Positives = 209/483 (43%), Gaps = 62/483 (12%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD-----EKALHHLFSEVIDNAMDEV 89
             + + +  Y   +IR L  +E VR RPGMYIG        E  ++ L  EVIDN++DE 
Sbjct: 8   PVDNNNAVEYTDDNIRHLSDMEHVRTRPGMYIGRLGDGAHAEDGIYVLLKEVIDNSIDEF 67

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
                  IE++++ N  ++V D GRGIP     +          ++ L+ GGK+D+  ++
Sbjct: 68  KMQAGKKIEITVEENLRVSVRDYGRGIPQGKLIE---------AVSMLNTGGKYDSKAFK 118

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
            S GL+GVG+  VNALS    V   R   +    FS+G  L+   +      + GT I F
Sbjct: 119 KSVGLNGVGVKAVNALSSRFEVRSYRDGKVRIATFSKGNLLTDETQN--TEEENGTYIFF 176

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD  +F +   F    +  M ++  YL+  +   ++  +                  GL
Sbjct: 177 EPDNTLFLNYC-FKPEFIETMLRNYTYLNTGLAIIYNGHRI-------------LSRNGL 222

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
              L   +    L       G+          +E A     +   E  S+ N   T +GG
Sbjct: 223 VDLLNDNMTATGLYPIIHLKGE---------DIEIAFTHTGQYGEEYYSFVNGQHTTQGG 273

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           TH+S  +  + R IK++          ++   D+    V  ++V + EP F  QTKTKL 
Sbjct: 274 THQSAFKEHIARTIKEFFN-------KNMDYTDIRNGLVAAIAVNVEEPIFESQTKTKLG 326

Query: 389 SLDA-------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           S +         + V + ++   D++L +N   A  + + + E  +ER       ++ R+
Sbjct: 327 STNMVPGGVTVNKYVGDFIKQEVDNFLHKNADVAEAIQQKIQESEKERKAIAGVTKLARE 386

Query: 442 TAIRKLRLPGKLADCSQNIAHGT--------ELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            A +      KL DC  ++             +FI EGDSA GS  ++R+ + QAV  LR
Sbjct: 387 RAKKANLHNRKLRDCRIHLNDPKGKGLEEDSCIFITEGDSASGSITKSRDVNTQAVFSLR 446

Query: 494 GKI 496
           GK 
Sbjct: 447 GKP 449


>gi|22091034|dbj|BAC06808.1| gyrase B [Enterobacter cloacae]
          Length = 390

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 147/401 (36%), Positives = 226/401 (56%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL       +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYQHGVPDAPLAVTGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F+
Sbjct: 60  TMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    R
Sbjct: 230 QTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|60459490|gb|AAX20081.1| DNA gyrase subunit B [Leptospira alexanderi serovar Manzhuang]
 gi|60459492|gb|AAX20082.1| DNA gyrase subunit B [Leptospira alexanderi serovar Mengla]
          Length = 142

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 80/142 (56%), Positives = 107/142 (75%), Gaps = 1/142 (0%)

Query: 51  ILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVV 110
           ILEGLE VR RPGMYIG  DE  LH +  EV+DN++DE +AG+   I++S+  N  + V 
Sbjct: 1   ILEGLEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEIKISILPNNIIEVK 60

Query: 111 DNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELH 170
           DNGRGIPV+ HP     ST+E+++T LHAGGKF+N  Y++SGGLHGVG+SVVNALS+ L 
Sbjct: 61  DNGRGIPVDIHP-DKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYLE 119

Query: 171 VTVARQNTIFSQKFSRGIPLSP 192
           V V ++  I++QK+ +GIP+SP
Sbjct: 120 VEVHQKGKIYTQKYEKGIPVSP 141


>gi|148793386|gb|ABR12757.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
          Length = 396

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 148/405 (36%), Positives = 236/405 (58%), Gaps = 14/405 (3%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS+++ +T+ R   I+ Q +  G+P +PL +     +K GT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSEKVELTINRNGHIYQQTYCHGVPQAPLAEVGD-SDKTGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           R+ F P  + F +   F    L K  +  ++L+  +      ++E        +++ F +
Sbjct: 60  RLRFWPSEETFTNNLEFHYEILAKRLRELSFLNSGISIRLIDERE------EGKQDHFTY 113

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG++ +++    N++ I  ++F   +E++     TVE A+ W +     +  + N I  
Sbjct: 114 EGGIRAFVEHLNRNKTPIHQKVFHFDSERED--GITVEVAMQWNDGFQEGVYCFTNNIPQ 171

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTR +  + +      K   +   DD     V ++SV + +P+F+ Q
Sbjct: 172 RDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLVAVVSVKVPDPKFSSQ 231

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRK 441
           TK KLVS + +  VE+A+ + F  +L+++P +A  +   +I+ S  R   RK R    RK
Sbjct: 232 TKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKAREMTRRK 291

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  
Sbjct: 292 GALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 351

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDAD
Sbjct: 352 ARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDAD 396


>gi|19912099|dbj|BAB88361.1| DNA gyrase subunit B [CFB-group bacterium QA93A]
          Length = 391

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 143/395 (36%), Positives = 214/395 (54%), Gaps = 9/395 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+S VNALSD L  TV ++  I+ Q++ RG  L P++      +  GT +TF
Sbjct: 1   VSGGLHGVGVSCVNALSDHLTATVHKEGKIWQQEYERGKTLYPVKTIGDT-DFTGTIVTF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD  IF     ++   L    +  AYL+  +    +  +   ++      E F+   GL
Sbjct: 60  LPDKSIFQQTTEYNYDTLATRMRELAYLNKGITITLTDKRNQDDEG-NDISEVFHSEEGL 118

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
             +++     R+ I  ++ + + EK G     VE A+ + +     + SY N I T EGG
Sbjct: 119 SEFVKFLDGTRTQIIQDVISMEGEKNGIP---VEVAMVYNDSYAENLHSYVNNINTHEGG 175

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH SG R  LT  +KKYA+ +   + +      DD       I+SV + EP+F GQTKTK
Sbjct: 176 THLSGFRRGLTHTLKKYADESGLLKNVKFEIAGDDFREGLTAIVSVKVAEPQFEGQTKTK 235

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIR 445
           L + +    V  A+ +    YL +NP +A  +++ VI  ++ R   RK RE+  RKT + 
Sbjct: 236 LGNREVSAAVSQAVSEMLTDYLEENPNDAKTIVQKVILAAQARHAARKAREMVQRKTVMS 295

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV  A   
Sbjct: 296 IGGLPGKLSDCSETDPAQCEIFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQH 355

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           K+  N++I ++  ALG    ++    +L   K+  
Sbjct: 356 KVFENEEIKNMFTALGVSIGTEDDPRELNLSKLRY 390


>gi|19912105|dbj|BAB88364.1| DNA gyrase subunit B [Cytophaga sp. MBIC01355]
 gi|19912107|dbj|BAB88365.1| DNA gyrase subunit B [Cytophaga sp. MBIC01356]
          Length = 391

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 151/395 (38%), Positives = 215/395 (54%), Gaps = 9/395 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+S VNALS+ L  TV R   I+ Q++ RG  L P++      +KRGT +TF
Sbjct: 1   VSGGLHGVGVSCVNALSEHLKATVHRDGKIWEQEYERGKTLYPVKAVGDT-DKRGTIVTF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +PDP+IF     +    L    +  AYL+  +       +   E     E E F+   GL
Sbjct: 60  KPDPEIFKQTLEYSYDTLASRLRELAYLNKGITIHLIDKRVKKEDG-SFEGETFHSEEGL 118

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K ++Q    NR  +  E  + + EK G     VE A+ +       + SY N I T EGG
Sbjct: 119 KEFIQFLDGNREPLMQEAISFEGEKNGVP---VEVAMIYNTSYAENLHSYVNNINTHEGG 175

Query: 329 THESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH SG R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F GQTKTK
Sbjct: 176 THLSGFRRGLTHTLKKYADESGMLDKLKFDIAGDDFREGLTAIVSVKVAEPQFEGQTKTK 235

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIR 445
           L + +   +V  A+ +    YL ++P  A  +++ VI  ++ R   +K RE+  RKT + 
Sbjct: 236 LGNREVSASVSQAVSEMLTDYLEEHPDTAKTIVQKVILAAQARHAAQKAREMVQRKTVMS 295

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R  QA+LPLRGKILNV  A + 
Sbjct: 296 IGGLPGKLSDCSEQDPAQCEVFLVEGDSAGGTAKQGRDRKFQAILPLRGKILNVEKAMTH 355

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           K+  N++I ++  ALG    ++   + L   K+  
Sbjct: 356 KVFENEEIKNIFTALGVTIGTEEDSKALNLSKLRY 390


>gi|22091028|dbj|BAC06805.1| gyrase B [Enterobacter cloacae]
 gi|22091030|dbj|BAC06806.1| gyrase B [Enterobacter cloacae]
          Length = 390

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 146/401 (36%), Positives = 224/401 (55%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL          G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYQHGVPEAPLAVTGDTEK-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F+
Sbjct: 60  TMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    R
Sbjct: 230 QTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|9971301|dbj|BAB12468.1| DNA gyrase B subunit [Marinospirillum megaterium]
          Length = 404

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 147/412 (35%), Positives = 223/412 (54%), Gaps = 16/412 (3%)

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
           LE+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+EL +T+ R+  ++ Q +  GI 
Sbjct: 3   LEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELTLTIWREKQVYEQVYKHGIS 62

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            +PL          GT + FRP P+ F +   F    L K  +  ++L+  VK     ++
Sbjct: 63  QAPLTAVGTTEK-TGTLVRFRPSPQTFNN-IEFVFETLAKRLRELSFLNSGVKISLRDER 120

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
              E       E F++ GGLK ++     N++ +    +     +       VE A+ W 
Sbjct: 121 NGRE-------EVFHYEGGLKAFVDHLNTNKTTLGKVFYFSHQREDD--GVNVEVAMQWN 171

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISA 366
           +     I  Y N I   +GG H +G R  LTR + +Y E      K  +S   DD     
Sbjct: 172 DGYSENIYCYTNNIPQRDGGAHLAGFRSGLTRVLNQYIEQEGLAKKAKVSTTGDDAREGL 231

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-R 425
             I+SV + +P+F+ QTK KLVS + +  VE  +   F  YL++ P EA  ++  +++  
Sbjct: 232 TAIVSVKVPDPKFSSQTKDKLVSSEVRTAVEQEMGKTFTDYLLEFPQEAKAIVGKMLDAA 291

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
                 R+ +    RK A+    LPGKLADC +     +E+++VEGDSAGGSAKQ R+R 
Sbjct: 292 RAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPSLSEIYLVEGDSAGGSAKQGRDRR 351

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYE 536
            QA+LPL+GKI NV  A  +K+ ++ ++  L+ ALGC    +    + LRY 
Sbjct: 352 TQAILPLKGKIFNVEKARFDKMLSSAEVGTLITALGCGIGREEFNADKLRYH 403


>gi|159894986|gb|ABX09839.1| DNA gyrase beta subunit [Vibrio sp. B356]
          Length = 399

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 150/409 (36%), Positives = 230/409 (56%), Gaps = 15/409 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVVGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             ++ GT+I F P  + F +   F    L K  +  ++L+  V      ++E        
Sbjct: 61  T-DQTGTQIRFWPSAETFTN-IEFHYDILAKRLRELSFLNSGVSIKLVDEREAD------ 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F F GG++ ++     N++ I  +IF    E++      VE A+ W +     I  
Sbjct: 113 KSDHFMFEGGIQAFVDHLNTNKTPIIEKIFHFDFERED--GIAVEVAMQWNDGFQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV + 
Sbjct: 171 FTNNIPQRDGGTHLAGFRAALTRTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ +    +L++NP EA  +   +I+        R+ 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 399


>gi|164690657|dbj|BAF98612.1| gyrase B [Sporolactobacillus nakayamae subsp. racemicus]
          Length = 389

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 151/400 (37%), Positives = 224/400 (56%), Gaps = 15/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS ++ V V R   ++ Q++ RG P + L+      +K G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTKMWVKVYRNGHVYYQEYHRGKPAADLKIIGD-SDKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F PDP+IF D   FD   L    +  A+L+  ++      +E        ++E F+
Sbjct: 60  TTTHFDPDPEIFTDTTTFDYDTLRVRVRELAFLNKNIRISIEDRRE------EDKQETFH 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+++Y++    ++ +I   I   + EK G     VE A+ +      ++ S+ N I 
Sbjct: 114 YEGGIRSYVEYLNRSKEVIHQPIDL-EGEKDGI---KVEIAMQYNSGFASQLYSFANNIH 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G +VALTR I  YA   Q  +    ++  DD+      I+S+   +P+F G
Sbjct: 170 THEGGTHEYGFKVALTRVINDYARKKQFVKSSDPNLTGDDVREGLTAIVSIKHPDPQFEG 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + + +   +    + F  +L++NP  A  ++E  I  S  R   +K RE   R
Sbjct: 230 QTKTKLGNSEVRAITDTLFSEAFSRFLLENPDVARLIIEKGIVASRARTAAKKARELTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+++    LPGKLADCS   A  +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 290 KSSLEISSLPGKLADCSSKDASISELYIVEGDSAGGSAKQGRDRLFQAILPLRGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  ++I +N +I  ++ ALG     ++  +  RY K+II
Sbjct: 350 KARLDRILSNAEIRAMITALGTGIGDEFNLDKARYHKIII 389


>gi|126035286|gb|ABN72396.1| gyrase B subunit [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 388

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 146/399 (36%), Positives = 223/399 (55%), Gaps = 16/399 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P +PL       +K GT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTM 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ 
Sbjct: 60  VRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYE 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   
Sbjct: 113 GGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQR 169

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QT
Sbjct: 170 DGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQT 229

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKT 442
           K KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK 
Sbjct: 230 KDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKG 289

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 ALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 349

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
             +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 388


>gi|35210345|dbj|BAC92684.1| gyrase B subunit [Alicyclobacillus disulfidooxidans]
          Length = 390

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 137/400 (34%), Positives = 218/400 (54%), Gaps = 14/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            S Y++SGGLHGVG SVVNALS  + V V R   ++ Q++ RG+P+  L       N  G
Sbjct: 1   GSGYKVSGGLHGVGASVVNALSSWMRVEVHRDGNVYEQEYERGVPMYDLRIIG-TTNHTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T ++FRPD +IF +   FDA  L    +  A+L+  ++  ++ ++         +   ++
Sbjct: 60  TTVSFRPDSEIFTETTVFDADILQNRLRELAFLNAGLEIVFTDER------IEGKTNVYH 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTIL 323
           + GG+  +++   ++R ++  +      +K      TVE A+ + +        + N I 
Sbjct: 114 YSGGVAAFVEYLNKSRDVLHEQPVFVAGKKD---EVTVEIALQYNDGYSTTLFSFANNIN 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G + ALTR I  YA      +    ++  DD+      I+SV + EP+F G
Sbjct: 171 THEGGTHEAGFKSALTRVINDYARKANAIKEADNNLSGDDVREGLTAIVSVKVPEPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNR 440
           QTKTKL + + +  VE+   +    +L ++P  A K+LE  ++        R+ +    R
Sbjct: 231 QTKTKLGNSEVRGIVESLFGEKLQTFLDEHPSVAKKILEKSIMAARAREAARKARELTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS       EL+IVEGDSAGGSAK  R+R+ QA+LP+RGKI+NV 
Sbjct: 291 KSALEVSSLPGKLADCSSRDPSICELYIVEGDSAGGSAKSGRDRNFQAILPIRGKIINVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +K+ +N+++  ++ A G     ++     RY KV+I
Sbjct: 351 KARLDKVLSNEEVRSIITASGTGIAEEFDISKARYHKVVI 390


>gi|99034415|ref|ZP_01314424.1| hypothetical protein Wendoof_01000773 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 605

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 209/378 (55%), Gaps = 10/378 (2%)

Query: 231 TQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSE-IF 288
            +  A+L+  +       + E   +    +  +     G   ++Q   +N++ ++     
Sbjct: 1   MRELAFLNSNIDITLRDLRNEPYTESHFNQSNQSKDNFGTANFVQYLDKNKTHVTKIASM 60

Query: 289 TGKTEKKGTH-RGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
            G  E  G     ++EW  ++      +  + N I   +GGTH +G R ALTR I  YA 
Sbjct: 61  KGDAEDLGISLEISMEWNDSY---YENMLCFTNNIRQRDGGTHLAGFRSALTRCINTYAT 117

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                 K  +++  +D+      +LS+ + +P+F+ QTK KLVS +A+  VE+ + D   
Sbjct: 118 NEGFLKKAKVNLTGEDVREGLTCVLSLKMPDPKFSSQTKDKLVSSEARAVVESIVSDKLS 177

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
             L  +P  A  ++E  I  ++ R   RK RE V  K  I    LPGKLADC +     +
Sbjct: 178 TILETDPKLAASIVERAIRSAKGREAARKARELVKSKNNIDIATLPGKLADCQEKAPELS 237

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           ELFIVEG+SAGG+AKQ RNR  QAVL LRGKILNV     ++I ++ +I  L+ A+G   
Sbjct: 238 ELFIVEGNSAGGTAKQGRNRKTQAVLALRGKILNVERVSLDRIFSSAEIGSLITAIGAGI 297

Query: 525 RSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT 583
            S++ + E  RY K+IIMTDADVDG+HI +L+LTFF++ M ++IE+ +L++  PPL+++T
Sbjct: 298 GSEHFDIEKARYHKIIIMTDADVDGSHIRTLILTFFFRHMREVIEKGYLYIAQPPLYKVT 357

Query: 584 QGTKSVYAHDEEHKQKIL 601
           +  K  Y  D+E  ++ +
Sbjct: 358 KNAKDTYIKDDETFEEYI 375



 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 4/78 (5%)

Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667
           GK  + + RFKGLGEM A QL +T ++   RTLL+VEI       ++     + LMG   
Sbjct: 531 GKKGLTLQRFKGLGEMNADQLWDTTLNPEARTLLKVEI----KDYEEADSIFSILMGDIV 586

Query: 668 DERFKFIQERASFIDDVG 685
           + R  FI   A  + DV 
Sbjct: 587 EPRRDFINSNALNVHDVD 604


>gi|68445344|dbj|BAE03173.1| DNA gyrase subunit B [actinobacterium Aac-29]
          Length = 399

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 131/401 (32%), Positives = 216/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG SVVNALS+ L V V     +++Q++ RG+P +PL+K  +  ++ G
Sbjct: 1   GGGYAVSGGLHGVGSSVVNALSNRLTVAVKTDGHLWTQEYLRGVPTAPLKK-GEAVDETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D +IF     ++   L +  Q  A+L+  V      ++ E  ++ G      +
Sbjct: 60  TTVTFWADDEIFETTT-YNFETLSRRFQEMAFLNRGVSIELIDERPEYKDEEGNARSVHY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG+  +++     +  +          +    + + E A+ W  +    + ++ N I
Sbjct: 119 KYDGGISDFVKHLNAAKGEMVHPQVIEFGAEDKERKISAEIALQWNNQYSESVYTFANVI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
            T +GGTHE G R ALT  + +YA+  Q   ++  ++  +D+    V I+SV + EP+F 
Sbjct: 179 QTPDGGTHEEGFRSALTNVVNRYAKEKQLLKEKDDNLSGEDIREGLVAIVSVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTK KL + +    V+    +    +  +NP EA  ++  +I+ +  R+  RK RE+ R
Sbjct: 239 GQTKAKLGNTEVCTFVQKITYESMADWFDRNPNEARDIIRKLIQAATARIAARKARELTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +   + LPGKL+DC        E+F+VEGDSAGGSAKQAR+   QA++P+RGKILNV
Sbjct: 299 RKGLLESMALPGKLSDCQSTNPVECEIFVVEGDSAGGSAKQARDPRVQAIMPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +K+  N ++  L+ ALG      +    LRY K+++
Sbjct: 359 EKARIDKMLQNTEVQGLISALGTGIHDSFDVSRLRYHKIVL 399


>gi|85541243|gb|ABC70862.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
          Length = 391

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 144/402 (35%), Positives = 225/402 (55%), Gaps = 16/402 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F
Sbjct: 60  GTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           ++ GG+K +++   +N++ I   IF   TEK G     +E A+ W +     I  + N I
Sbjct: 113 HYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GIEVALQWNDGFQENIYCFTNNI 169

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+
Sbjct: 170 PQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFS 229

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    
Sbjct: 230 SQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTR 289

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL++VEGDSAGG AKQ RNR N A+LPL+GKILNV
Sbjct: 290 RKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGFAKQGRNRKNPAILPLKGKILNV 349

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY ++II
Sbjct: 350 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHRIII 391


>gi|159895002|gb|ABX09847.1| DNA gyrase beta subunit [Vibrio harveyi]
          Length = 400

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 154/410 (37%), Positives = 232/410 (56%), Gaps = 15/410 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+ +Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL     
Sbjct: 1   AGGKFDDYSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVVGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
              + GT+I F P  + F +   F    L K  +  ++L+  V      ++E        
Sbjct: 61  T-EQTGTQIRFWPSAETFTNI-EFHYDILAKRLRELSFLNSGVSIKLVDEREAD------ 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F F GG++ +++    N++ I  +IF    E++      VE A+ W +     I  
Sbjct: 113 KSDHFMFEGGIQAFVEHLNTNKTPIIEKIFHFDFERED--GIAVEVAMQWNDGFQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV + 
Sbjct: 171 FTNNIPQRDGGTHLAGFRAALTRTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           +P+F+ QTK KLVS + +  VE+A+ +    +L++NP EA  +   +I+ +  R   RK 
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCTKIIDAARAREAARKA 290

Query: 436 R-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           R    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTD 543
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTD
Sbjct: 351 KILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTD 400


>gi|20387212|dbj|BAB91306.1| gyrase B [Streptomyces salmonis]
 gi|308152565|dbj|BAJ22261.1| DNA gyrase subunit B [Streptomyces salmonis]
          Length = 399

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 138/401 (34%), Positives = 214/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL++ E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGFRWTQDYKLGVPTAPLQQNEAT-DEHG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  +    + ++    ++ G P    +
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLTISLTDERPAHVDEEGKPLTVRY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           ++ GG+  +++     +  +          +      ++E A+ W  +    + S+ NTI
Sbjct: 119 HYEGGISDFVRYLNSRKGEVIHPTVIDFEAEDKERMLSLEVAMQWNSQYTEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I +YA   +   ++  ++  DD+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGDDIREGLTAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+  + +    +L +NP EA  ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKVVHEQLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  NQ+I  L+ A G      +    LRY K+I+
Sbjct: 359 EKARIDKILQNQEIQALISAFGTGVHEDFDIAKLRYHKIIL 399


>gi|20387234|dbj|BAB91317.1| gyrase B [Streptomyces ehimensis]
          Length = 399

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 138/401 (34%), Positives = 215/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL+K E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGFHWTQDYKLGVPTAPLQKNEPT-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  +    + ++    ++ G P    +
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLTISLTDERPVHVDEEGKPLSVRY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTI 322
           ++ GG+  +++     +  +          +      ++E ++ W  +  E + S+ NTI
Sbjct: 119 HYEGGISDFVRYLNSRKGEVVHPSVIAFEAEDKERMLSLEVSMQWNTQYSEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I +YA   +   ++  ++  DD+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGDDIREGLTAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+  + +    +L +NP EA+ ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKVVHEQLTDWLDRNPNEASDIIRKSIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLETASLPGKLSDCQSNEPAKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  N +I  L+ A G      +    LRY K+I+
Sbjct: 359 EKARIDKILQNTEIQALISAFGTGVHEDFDISKLRYHKIIL 399


>gi|126035268|gb|ABN72387.1| gyrase B subunit [Enterobacter cloacae]
          Length = 389

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 148/400 (37%), Positives = 225/400 (56%), Gaps = 16/400 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL       +K GT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYQHGVPEAPLAVTGDT-DKTGTM 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ 
Sbjct: 60  VRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE-------DHFHYE 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   
Sbjct: 113 GGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQR 169

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QT
Sbjct: 170 DGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQT 229

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKT 442
           K KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    RK 
Sbjct: 230 KDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKG 289

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 ALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 349

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIM 541
             +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIM
Sbjct: 350 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIM 389


>gi|20387126|dbj|BAB91263.1| gyrase B [Streptomyces roseoverticillatus]
 gi|20387220|dbj|BAB91310.1| gyrase B [Streptomyces roseoverticillatus]
          Length = 399

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 139/401 (34%), Positives = 214/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL+K E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGFRWTQDYKLGVPTAPLQKNEPT-DEHG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  +    + ++    ++ G P    +
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLSISLTDERPAHVDEEGKPLTVRY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           ++ GG+  +++     +  +          +      ++E A+ W  +    + S+ NTI
Sbjct: 119 HYEGGISDFVRYLNSRKGEVVHPTVIDFEAEDKERMLSLEVAMQWNTQYTEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I +YA   +   ++  ++  DD+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGDDIREGLTAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+  + +    +L +NP EA  ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKVVHEQLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLETASLPGKLSDCQSNEPAKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  NQ+I  L+ A G      +    LRY K+I+
Sbjct: 359 EKARIDKILQNQEIQALISAFGTGVHEDFDIAKLRYHKIIL 399


>gi|157280824|gb|ABV29333.1| gyrase subunit B [Streptomyces sp. AB2A]
          Length = 399

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 139/401 (34%), Positives = 212/401 (52%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS ++ V        ++Q +  G P +PL + E      G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSSKVSVEDQTDGFRWTQDYKTGAPTAPLARNEATEE-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE-IAEKYGIPEKEEF 263
           T +TF  DP +F     +    L +  Q  A+L+  +    + ++    ++ G P   ++
Sbjct: 60  TTVTFWADPDVFETT-EYSFETLARRFQEMAFLNKGLSISLTDERAAHVDEEGKPLSVKY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           ++ GG+  ++      +  +      G   +      ++E A+ W  +    + S+ NTI
Sbjct: 119 HYEGGIVDFVTYLNSRKGELVHPTVIGFEAEDKERMLSLEIAMQWNAQYTEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I KYA   +   +R  ++  +D+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTYLINKYARDKKLLRERDDNLTGEDIREGLTXIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+  + +    +L +NP EA  ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKIVNEHLADWLDRNPNEAADIVRKGIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPEYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  NQ+I  L+ A G      +    LRY K+I+
Sbjct: 359 EKARVDKILQNQEIQALISAFGTGVHEDFDISKLRYHKIIL 399


>gi|308153144|dbj|BAJ22161.1| DNA gyrase subunit B [Saccharopolyspora hordei]
          Length = 403

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 139/408 (34%), Positives = 219/408 (53%), Gaps = 18/408 (4%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y +SGGLHGVG+SVVNALS  L   +     ++ Q++    P++P+E+ EK  +K GT
Sbjct: 1   GAYAVSGGLHGVGVSVVNALSTALEAEIHTGGYVWRQRYEDSKPVAPVERGEKT-DKTGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------- 258
            ITF  DPK+F     ++A  + +  Q  A+L+  +      ++   E            
Sbjct: 60  SITFWADPKVFETTR-YNAETVARRLQEMAFLNKGLTIILRDERVAEEDEAGEDASGATA 118

Query: 259 --EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
             ++  F++PGGL+ +++     +  I  ++ +     +G     +E A+ W       +
Sbjct: 119 RVKERTFHYPGGLEDFVRHINATKEPIHKKVVSFSASGEGH---ELEIAMQWNSGYNQSV 175

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
            ++ NTI T EGGTHE G R ALTR +  YA   +    +  ++  DD+      I+SV 
Sbjct: 176 YTFANTINTHEGGTHEEGFRSALTRVVNAYARDKRLIKDKDGNLTGDDVREGLAAIVSVK 235

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           +REP+F GQTKTKL + + +  V+    +    +  +NP EA  ++   +  ++ R+  R
Sbjct: 236 VREPQFEGQTKTKLGNTEVKSFVQTTAFEWLTDWFERNPAEAKVIVNKAVSSAQARVAAR 295

Query: 434 KQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           K +E V RK+A+    LPGKL DC  N     EL+IVEGDSAGGSAK+ R    QA+LPL
Sbjct: 296 KAKELVRRKSAMDIGGLPGKLKDCQSNNPDECELYIVEGDSAGGSAKEGRESRFQAILPL 355

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           RGKI+NV  A  +K+  N ++  ++ ALG     ++    LRY K+++
Sbjct: 356 RGKIINVEKARIDKVLKNNEVQAIITALGTGIHDEFDLSKLRYHKIVL 403


>gi|82568121|dbj|BAE48495.1| DNA gyrase B [Mechercharimyces mesophilus]
          Length = 389

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 143/400 (35%), Positives = 223/400 (55%), Gaps = 15/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y  SGGLHGVG+SVVNALS+ L V V R   I  Q++ RG+P + L+   +  ++ G
Sbjct: 1   GEGYTFSGGLHGVGVSVVNALSEWLEVKVRRDGKIHFQRYERGVPQADLKVIGET-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I F+PDP +F +   +D   L    +  ++L+  +    + ++         + + + 
Sbjct: 60  TEIHFKPDPDVFTETTEYDYNTLQTRLRELSFLNSGLAITITDER-------GDKSDHYK 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           F GG+++Y++    NR ++  E    +  K G     VE A+ + +       SY N I 
Sbjct: 113 FDGGIRSYVEHLNRNREVMHKEPVYIQGTKDG---LNVEIAMQYNDSFSSHIYSYANNIH 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G + ALTR I  YA      +    ++  DD+      I+SV I +P+F G
Sbjct: 170 THEGGTHEAGFKSALTRVINDYARRNNLLKGQDSNLTGDDVREGLTSIISVKIADPQFEG 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + +A+   E+   + F  +L ++P EA K+++  +  +  R   R+ RE   R
Sbjct: 230 QTKTKLGNSEARTVTESLFSEHFHIFLEEHPQEAKKVIQKALTAARAREAARRARELTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC+   A  +EL++VEGDSAGG+AKQ R+R  QA+LPLRGKI+NV 
Sbjct: 290 KNALEVSSLPGKLADCTSRNASSSELYLVEGDSAGGTAKQGRDRMFQAILPLRGKIINVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            +  +K  +N+++  ++ ALG      ++ +  RY K+II
Sbjct: 350 KSRLDKALSNEEVRTIITALGTGVGEDFQIDKARYHKIII 389


>gi|20387226|dbj|BAB91313.1| gyrase B [Streptomyces takataensis]
 gi|20387238|dbj|BAB91319.1| gyrase B [Streptomyces sp. IFO 15818]
          Length = 399

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 138/401 (34%), Positives = 215/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL+K E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGFHWTQDYKLGVPTAPLQKNEPT-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  +    + ++    ++ G P    +
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLTISLTDERPAHVDEEGKPLSVRY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTI 322
           ++ GG+  +++     +  +          +      ++E ++ W  +  E + S+ NTI
Sbjct: 119 HYEGGISDFVRYLNSRKGEVVHPSVIAFEAEDKERMLSLEVSMQWNTQYSEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I +YA   +   ++  ++  DD+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGDDIREGLTAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+  + +    +L +NP EA+ ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKVVHEQLTDWLDRNPNEASDIIRKSIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLETASLPGKLSDCQSNEPAKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  N +I  L+ A G      +    LRY K+I+
Sbjct: 359 EKARIDKILQNTEIQALISAFGTGVHEDFDISKLRYHKIIL 399


>gi|85541241|gb|ABC70861.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Choleraesuis]
          Length = 390

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 144/401 (35%), Positives = 223/401 (55%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P +PL       +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F+
Sbjct: 60  TMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    R
Sbjct: 230 QTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGG AKQ RNR N A+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGFAKQGRNRKNPAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|20387206|dbj|BAB91303.1| gyrase B [Streptomyces paucisporogenes]
          Length = 399

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 140/401 (34%), Positives = 214/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G P +PL+K E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVRTDGFRWTQDYKLGAPTAPLQKNEAT-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  +    + ++    ++ G P    +
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLTISLTDERPAHVDEEGKPLSVRY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTI 322
           ++ GG+  +++     +  +          +      ++E A+ W  +  E + S+ NTI
Sbjct: 119 HYEGGISDFVRYLNSRKGEVVHPTVIDFDAEDKERMLSLEIAMQWNTQYSEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I +YA   +   ++  ++  DD+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGDDIREGLTAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+  + +    +L +NP EA  ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKVVHEHLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLETASLPGKLSDCQSNEPAKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  NQ+I  L+ A G      +    LRY K+I+
Sbjct: 359 EKARVDKILQNQEIQALISAFGTGVHEDFDIAKLRYHKIIL 399


>gi|20387148|dbj|BAB91274.1| gyrase B [Streptomyces eurocidicus]
 gi|308152577|dbj|BAJ22267.1| DNA gyrase subunit B [Streptomyces eurocidicus]
          Length = 399

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 138/401 (34%), Positives = 215/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL+K E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVRTDGYRWTQDYKLGVPTAPLQKNEAT-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  ++   +  + +  ++ G P   ++
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLRISLTDTRVDHVDEEGKPLMVDY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTI 322
           ++ GG+  +++     +  +          +      +VE A+ W  +  E + S+ NTI
Sbjct: 119 HYEGGIVDFVKYLNSRKGELIHPTVIDIEAEDKERMLSVEIAMQWNSQYSEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I +YA   +   ++  ++  +D+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGEDIREGLTAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+    +    +L +NP EA  ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKVAHEHLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  N ++  L+ A G      +    LRY K+I+
Sbjct: 359 EKARIDKILQNTEVQALISAFGTGVHEDFDIAKLRYHKIIL 399


>gi|308153064|dbj|BAJ22121.1| DNA gyrase subunit B [Bacillus badius]
          Length = 390

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 146/400 (36%), Positives = 222/400 (55%), Gaps = 14/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS++L V V R N I+ Q + RG+P   L+      +  G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSEKLEVFVHRDNQIYYQSYKRGVPQEELKVVGDT-DYTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I F+PD +IF +   ++   L    +  A+L+  ++      +E        +  E+Y
Sbjct: 60  TTIHFKPDAEIFTETTVYEYDTLANRLRELAFLNRGIRIIIEDRRE------EGKTNEYY 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K+Y++     + ++ SE    +  K G      E A+ + E     + S+ N I 
Sbjct: 114 YEGGIKSYVEHLNRTKEVVHSEPIYVEGTKDGI---AAEIALQYNEGFASNVYSFANNIN 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHESG + ALTR I  YA      +    ++  +D+      I+S+   +P+F G
Sbjct: 171 TYEGGTHESGFKTALTRVINDYARKNGLVKEAETNLSGEDVREGLTAIISIKHPDPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + +A+   +      F+ +L++NP  A K++E  +  +  R+  +K RE   R
Sbjct: 231 QTKTKLGNSEARTVTDAVFSSHFETFLLENPAVARKIVEKGLMAARARMAAKKARELTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS      +EL++VEGDSAGGSAKQ R+R  QA+LPLRGKI+NV 
Sbjct: 291 KSALEVSSLPGKLADCSSRDPEISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKIINVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +KI +N +I  ++ ALG     ++     RY K++I
Sbjct: 351 KARLDKILSNNEIRMIITALGTGIGDEFDISKARYHKLVI 390


>gi|20387114|dbj|BAB91257.1| gyrase B [Streptomyces albireticuli]
          Length = 399

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 138/401 (34%), Positives = 215/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL+K E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGHRWTQDYKLGVPTAPLQKNEAT-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  ++   +  + +  ++ G P   ++
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLRISLTDTRVDHVDEEGKPLMVDY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTI 322
           ++ GG+  +++     +  +          +      +VE A+ W  +  E + S+ NTI
Sbjct: 119 HYEGGIVDFVKYLNSRKGELIHPTVIDIEAEDKERMLSVEIAMQWNSQYSEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I +YA   +   ++  ++  +D+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGEDIREGLTAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+    +    +L +NP EA  ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKVAHEHLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  N ++  L+ A G      +    LRY K+I+
Sbjct: 359 EKARIDKILQNTEVQALISAFGTGVHEDFDIAKLRYHKIIL 399


>gi|126035266|gb|ABN72386.1| gyrase B subunit [Enterobacter cloacae]
          Length = 388

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 148/399 (37%), Positives = 225/399 (56%), Gaps = 16/399 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS +L + + R+  I  Q ++ G+P +PL       +K GT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYTHGVPQAPLAVTGDT-DKTGTMV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ G
Sbjct: 60  RFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDNKE-------DHFHYEG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   +
Sbjct: 113 GIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRD 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK
Sbjct: 170 GGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTK 229

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTA 443
            KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A
Sbjct: 230 DKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGA 289

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A 
Sbjct: 290 LDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 349

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIM 541
            +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIM
Sbjct: 350 FDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIM 388


>gi|145309493|dbj|BAF56644.1| DNA gyrase subunit B [Alicyclobacillus kakegawensis]
          Length = 389

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 143/400 (35%), Positives = 225/400 (56%), Gaps = 15/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            S Y++SGGLHGVG SVVNALS+ L V V R   +  Q++ RG+PL  L+      +  G
Sbjct: 1   GSGYKVSGGLHGVGASVVNALSEWLRVEVHRDGKVHVQEYERGVPLYDLKVVG-TTDHTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T ++FRPDP+IF +   F +  L    +  A+L+  ++  ++ ++E        +   + 
Sbjct: 60  TIVSFRPDPEIFTETTEFQSDILQGRLRELAFLNAGLEIMYNDERE-------GKSRTYC 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTIL 323
           + GG+  +++   +++ ++  +    K  ++     +VE A+ + +    +   + N I 
Sbjct: 113 YSGGVSEFVRFLNKSKDVLHEDPVFVKGVRQDV---SVEIALQYNDGYAAVLYSFANNIH 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAG 381
           T EGG+HE+G + ALTR I  YA      +    ++  DD+      I+SV + +P+F G
Sbjct: 170 THEGGSHEAGFKAALTRVINDYARKMNLLKDNESNLTGDDVREGLTAIVSVKVPDPQFEG 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + + +  V+    D F  +L QNP  A ++++  I  +  R   RK RE   R
Sbjct: 230 QTKTKLGNSEVRGIVDGLFSDKFYAFLEQNPSVARRIVDKSITAARAREAARKAREVTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS   A   EL+IVEGDSAGGSAKQ R+R+ QA+LPLRGKI+NV 
Sbjct: 290 KSALEVSSLPGKLADCSSKDASVCELYIVEGDSAGGSAKQGRDRNFQAILPLRGKIINVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +KI +N +I  ++ A+G     ++     RY K++I
Sbjct: 350 KARLDKILSNAEIRSIITAIGTGIGDEFDIAKARYHKIVI 389


>gi|20387112|dbj|BAB91256.1| gyrase B [Streptomyces abikoensis]
          Length = 399

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 138/401 (34%), Positives = 215/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL+K E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGYHWTQDYKLGVPTAPLQKNEPT-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  +    + ++    ++ G P    +
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLTISLTDERPAHVDEEGKPLSVRY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTI 322
           ++ GG+  +++     +  +          +      ++E ++ W  +  E + S+ NTI
Sbjct: 119 HYEGGISDFVRYLNSRKGEVVHPSVIAFEAEDKERMLSLEVSMQWNTQYSEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I +YA   +   ++  ++  DD+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGDDIREGLTAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+  + +    +L +NP EA+ ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKVVHEQLTDWLDRNPNEASDIIRKSIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLETASLPGKLSDCQSNEPAKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  N +I  L+ A G      +    LRY K+I+
Sbjct: 359 EKARIDKILQNTEIQALISAFGTGVHEDFDISKLRYHKIIL 399


>gi|15530005|gb|AAL01490.1| gyrase B [Shewanella sp. CL256/73]
          Length = 399

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 147/410 (35%), Positives = 229/410 (55%), Gaps = 16/410 (3%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG+SVVNALS +L +T+ R+  +  Q ++ G+P  P++       
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSKKLQLTIRREGKVHEQFYTHGVPDEPIKVIGDATK 60

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             GT I F P  + F D   F    L K  +  ++L+  V      +++        + E
Sbjct: 61  -TGTEIRFWPSEETFSD-VEFHFEILAKRVRELSFLNSGVGIRLVDERDN-------KNE 111

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F + GG+  ++     N++ ++ ++F    E++     TVE A+ W +     I  + N
Sbjct: 112 FFKYEGGISAFVDYLNRNKTPVNKDVFHFMQERED--GITVEVAMQWNDGYQESIFCFTN 169

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPE 378
            I   +GGTH +G R ALTR +  Y E      K   +   DD       ++SV + +P+
Sbjct: 170 NIPQRDGGTHLAGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVPDPK 229

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQRE 437
           F+ QTK KLVS + +  VE  + +  + YL++NP +A  ++  +++        R+ +  
Sbjct: 230 FSSQTKDKLVSSEVKAAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREM 289

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
             RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKIL
Sbjct: 290 TRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKIL 349

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADV 546
           NV  A  +K+ ++Q++  L+ ALGC   R +Y  +  RY  +IIMTDADV
Sbjct: 350 NVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKTRYHNIIIMTDADV 399


>gi|20387162|dbj|BAB91281.1| gyrase B [Streptomyces hiroshimensis]
          Length = 399

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 139/401 (34%), Positives = 215/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL++ E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGYRWTQDYKLGVPTAPLQQNEAT-DEHG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  +    + ++    ++ G P    +
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLTISLTDERPAHVDEEGKPLTVRY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTI 322
           ++ GG+  +++     +  +          +      ++E A+ W  +  E + S+ NTI
Sbjct: 119 HYEGGISDFVRYLNSRKGEVIHPTVIDFEAEDKERMLSLEVAMQWNTQYSEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I +YA   +   ++  ++  DD+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGDDIREGLTAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+  + +    +L +NP EA  ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKVVHEQLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLETASLPGKLSDCQSNEPAKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  NQ+I  L+ A G      +    LRY K+I+
Sbjct: 359 EKARIDKILQNQEIQALISAFGTGVHEDFDIAKLRYHKIIL 399


>gi|126035304|gb|ABN72405.1| gyrase B subunit [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|126035308|gb|ABN72407.1| gyrase B subunit [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|126035318|gb|ABN72412.1| gyrase B subunit [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 387

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 145/398 (36%), Positives = 222/398 (55%), Gaps = 16/398 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P +PL       +K GT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTM 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ 
Sbjct: 60  VRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYE 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   
Sbjct: 113 GGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQR 169

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QT
Sbjct: 170 DGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQT 229

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKT 442
           K KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK 
Sbjct: 230 KDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKG 289

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 ALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 349

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
             +K+ ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 350 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSII 387


>gi|29652735|gb|AAO87337.1| DNA gyrase B [Listeria monocytogenes]
          Length = 196

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 87/198 (43%), Positives = 120/198 (60%), Gaps = 2/198 (1%)

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +R +    + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+L
Sbjct: 1   AKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAIL 60

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           P+RGKILNV  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAH
Sbjct: 61  PIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAH 120

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           I +LLLT FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  
Sbjct: 121 IRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDT 178

Query: 611 KIEISRFKGLGEMLASQL 628
           K  I R+KGLGEM   QL
Sbjct: 179 KYSIQRYKGLGEMNPEQL 196


>gi|29652773|gb|AAO87356.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652879|gb|AAO87409.1| DNA gyrase B [Listeria monocytogenes]
          Length = 197

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 87/198 (43%), Positives = 120/198 (60%), Gaps = 2/198 (1%)

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +R +    + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+L
Sbjct: 2   AKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAIL 61

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           P+RGKILNV  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAH
Sbjct: 62  PIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAH 121

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           I +LLLT FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  
Sbjct: 122 IRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDT 179

Query: 611 KIEISRFKGLGEMLASQL 628
           K  I R+KGLGEM   QL
Sbjct: 180 KYSIQRYKGLGEMNPEQL 197


>gi|29652883|gb|AAO87411.1| DNA gyrase B [Listeria monocytogenes]
          Length = 199

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 87/198 (43%), Positives = 120/198 (60%), Gaps = 2/198 (1%)

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +R +    + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+L
Sbjct: 4   AKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAIL 63

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           P+RGKILNV  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAH
Sbjct: 64  PIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAH 123

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           I +LLLT FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  
Sbjct: 124 IRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDT 181

Query: 611 KIEISRFKGLGEMLASQL 628
           K  I R+KGLGEM   QL
Sbjct: 182 KYSIQRYKGLGEMNPEQL 199


>gi|29652693|gb|AAO87316.1| DNA gyrase B [Listeria monocytogenes]
          Length = 198

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 87/198 (43%), Positives = 120/198 (60%), Gaps = 2/198 (1%)

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +R +    + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+L
Sbjct: 3   AKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAIL 62

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           P+RGKILNV  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAH
Sbjct: 63  PIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAH 122

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           I +LLLT FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  
Sbjct: 123 IRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDT 180

Query: 611 KIEISRFKGLGEMLASQL 628
           K  I R+KGLGEM   QL
Sbjct: 181 KYSIQRYKGLGEMNPEQL 198


>gi|20387210|dbj|BAB91305.1| gyrase B [Streptomyces roseoverticillatus]
 gi|20387236|dbj|BAB91318.1| gyrase B [Streptomyces roseoverticillatus]
 gi|308152563|dbj|BAJ22260.1| DNA gyrase subunit B [Streptomyces roseoverticillatus]
          Length = 399

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 138/401 (34%), Positives = 214/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL++ E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGFRWTQDYKLGVPTAPLQQNEAT-DEHG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  +    + ++    ++ G P    +
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLTISLTDERPAHVDEEGKPLTVRY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           ++ GG+  +++     +  +          +      ++E A+ W  +    + S+ NTI
Sbjct: 119 HYEGGISDFVRYLNSRKGEVIHPTVIDFEAEDKERMLSLEVAMQWNTQYTEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I +YA   +   ++  ++  DD+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGDDIREGLTAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+  + +    +L +NP EA  ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKVVHEQLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLETASLPGKLSDCQSNEPAKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  NQ+I  L+ A G      +    LRY K+I+
Sbjct: 359 EKARIDKILQNQEIQALISAFGTGVHEDFDIAKLRYHKIIL 399


>gi|20387154|dbj|BAB91277.1| gyrase B [Streptomyces netropsis]
 gi|20387190|dbj|BAB91295.1| gyrase B [Streptomyces netropsis]
 gi|308152553|dbj|BAJ22255.1| DNA gyrase subunit B [Streptomyces netropsis]
 gi|308152559|dbj|BAJ22258.1| DNA gyrase subunit B [Streptomyces netropsis]
          Length = 399

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 138/401 (34%), Positives = 215/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL+K E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGYRWTQDYKLGVPTAPLQKNEAT-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  ++   +  + +  ++ G P   ++
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLRIALTDTRADHVDEEGKPLMVDY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTI 322
           ++ GG+  +++     +  +          +      +VE A+ W  +  E + S+ NTI
Sbjct: 119 HYEGGIVDFVKYLNSRKGELIHPTVIDIEAEDKERMLSVEIAMQWNSQYSEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I +YA   +   ++  ++  +D+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGEDIREGLTAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+    +    +L +NP EA  ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKVAHEHLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  N ++  L+ A G      +    LRY K+I+
Sbjct: 359 EKARIDKILQNTEVQALISAFGTGVHEDFDISKLRYHKIIL 399


>gi|20387132|dbj|BAB91266.1| gyrase B [Streptomyces caespitosus]
          Length = 399

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 138/401 (34%), Positives = 214/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL+K E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGFRWTQDYKLGVPTAPLQKNEAT-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  ++   +  + +  ++ G P   ++
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLRISLTDLRADHVDEEGKPLSVDY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTI 322
           ++ GG+  ++      +  +          +      +VE A+ W  +  E + S+ NTI
Sbjct: 119 HYEGGIVDFVTYLNARKGELIHPTVIDIEAEDKERMLSVEIAMQWNSQYSEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I +YA   +   ++  ++  +D+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRSALTGLINRYAREKKLLREKDDNLTGEDIREGLTAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+    +    +L +NP EA  ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKVAHEHLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  N ++  L+ A G      +    LRY K+I+
Sbjct: 359 EKARIDKILQNTEVQALISAFGTGVHEDFDIAKLRYHKIIL 399


>gi|302122524|gb|ADK92931.1| DNA gyrase subunit B [Geobacillus jurassicus]
          Length = 393

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 143/393 (36%), Positives = 215/393 (54%), Gaps = 14/393 (3%)

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG SVVNALS+ L V V R   I  Q++ RG P + L+   +  ++ GT   F+PDP
Sbjct: 11  LHGVGASVVNALSEWLEVYVYRDGKIHYQRYERGEPCTDLQVIGET-DRTGTTTRFKPDP 69

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IF +   FD   L    +  A+L+  +K   + ++    K        + + GG+++Y+
Sbjct: 70  EIFTETTEFDYETLATRLRELAFLNRGLKITLTDERVDNRKNE------YVYEGGIRSYV 123

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +     R ++  E      E+ G     VE A+ + +     I S+ N I T EGGTHES
Sbjct: 124 RHLNRTREVLHEEPIYIAGERDGI---AVEIALQYNDGYTSNIYSFVNNIHTHEGGTHES 180

Query: 333 GLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G ++ALTR I  YA   Q  +    ++  +D+      I+S+    P+F GQTKTKL + 
Sbjct: 181 GFKMALTRIINDYARKQQIFKDNDANLTGEDVREGLTAIVSIKHPSPQFEGQTKTKLGNS 240

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRL 449
           DA+   +    + F+ +L+++P  A K++E  ++        ++ +    RK+A+    L
Sbjct: 241 DARTVTDAVFSEQFETFLLEHPTIARKIVEKGMMAARARLAAKKARELTRRKSALEISNL 300

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +
Sbjct: 301 PGKLADCSSRDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILS 360

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           N ++  ++ ALG      +     RY K+IIMT
Sbjct: 361 NNEVRAIITALGTGIGEDFDISKARYHKIIIMT 393


>gi|33590312|gb|AAQ22696.1| DNA gyrase subunit B [Photorhabdus asymbiotica subsp. australis]
          Length = 386

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 144/397 (36%), Positives = 221/397 (55%), Gaps = 16/397 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS++L + + R   +  Q +  G+P SPL+   +   + G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKIVGET-EQTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           TR+ F P    F +   F    L K  +  ++L+  V       +   E       + F+
Sbjct: 60  TRVRFWPSMDTFRNNTEFQHDILAKRLRELSFLNSGVSIRLIDKRTNTE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   +F   TEK G     VE ++ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEFLNKNKTPIHPNVFYFSTEKDGI---GVEISMQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH  G R A+TR +  Y +      K  +S   DD     V ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    R
Sbjct: 230 QTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVSKIIDAARAREAARKAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYE 536
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY 
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYH 386


>gi|110612695|gb|ABG78310.1| GyrB [uncultured bacterium]
          Length = 404

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 158/411 (38%), Positives = 228/411 (55%), Gaps = 12/411 (2%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD +TY++SGGLHGVG+S VNALS ++HV VAR   I+  +FSRG  L  L    + +
Sbjct: 1   GKFDKNTYKVSGGLHGVGVSCVNALSKKMHVEVARDEKIYEIEFSRGKALHALRVVSETK 60

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
             RGT++ F  D  IF     FD   +LK  +  A+L+  VK     +++         +
Sbjct: 61  K-RGTKMRFWADDAIFSVTT-FDYDLILKRLRELAFLNRGVKIVLKDERDA-----EHPE 113

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG-TVEWAIAWCEENPEITS-Y 318
             F + GG+ +++    EN++ + +     +  K+ +      E ++ W +   +    Y
Sbjct: 114 VSFRYEGGIVSFVSYLNENKNTLFATPVYIRGSKEISDGIVEFEASLQWNDSYTDTLFSY 173

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIRE 376
            N I T +GGTH SG   ALTR    Y +     ++       DD+    V +LS+ +  
Sbjct: 174 VNNIATRQGGTHVSGFSTALTRVFNLYLKAHPLPKSEKFTVTGDDMREGMVAVLSLKVPN 233

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F GQTK KL +++    V+  + D    +L +NP  A  +LE  +  ++ R   R+ R
Sbjct: 234 PQFEGQTKQKLGNMEVGSCVQQIVGDELSTFLEENPAVAKVILEKALVAAQAREAARRAR 293

Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
           E+ RKTA+   RLPGKL DC +      ELFIVEGDSAGGSAK  R+R  QA+LP+RGKI
Sbjct: 294 ELTRKTALDSARLPGKLTDCQERDPALCELFIVEGDSAGGSAKSGRDRRFQAILPIRGKI 353

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADV 546
           LNV  A  E+I  NQ++  +V A+GC   + +   E LRY KVIIMTDADV
Sbjct: 354 LNVEKARLERILQNQEVATMVAAMGCGIGAGHFTLEKLRYHKVIIMTDADV 404


>gi|307939310|gb|ADN95846.1| DNA gyrase B [Bacteroidetes bacterium P3(2010)]
          Length = 428

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 162/434 (37%), Positives = 240/434 (55%), Gaps = 27/434 (6%)

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           +T L AGGKFD  +Y++SGGLHGVG+S VNALS +L VTV R   ++ Q++  G P   +
Sbjct: 1   MTVLXAGGKFDKGSYKVSGGLHGVGVSCVNALSTDLKVTVRRNGHMYEQEYKIGFPQYDV 60

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           ++     ++ GT + F PD  IF +   +    +    +  +YL+  ++   +  +E  E
Sbjct: 61  KQVGDT-DEHGTEVQFLPDASIFTE-TEYRYDTVAGRLRDLSYLNKGIRITLTDRREKLE 118

Query: 254 KYGIPEKEEFYFPGGLKTYLQT-KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
             G    EEFY  GGL+ ++Q    E R  + SE    ++EK GT    VE A+ +    
Sbjct: 119 -GGEFRGEEFYSTGGLRDFVQYLDGEQRPSLLSEPIYVESEKGGTP---VEVALQYNTSY 174

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGI 369
              + SY N I T EGGTH +G R A+TR +K Y +  +   K  + I  DD       +
Sbjct: 175 QENVYSYVNNINTIEGGTHVAGFRSAVTRVLKTYGDKNKLFEKAKVEITGDDFREGLTAV 234

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           +SV + EP+F GQTKTKL + +    V + + +    YL +NP +A +++E VI  ++ R
Sbjct: 235 ISVKVMEPQFEGQTKTKLGNSEVSGAVNSVVGEILTQYLDENPNQANRIMEKVILAAKAR 294

Query: 430 LRRRKQREVNRKTAIRKLRL-PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
           +  RK +++ ++  +      PGKLADCS++     EL++VEGDSAGG+AKQ RNR+ QA
Sbjct: 295 IAARKAKDMVQRKGVLSSNSLPGKLADCSESDPEICELYLVEGDSAGGTAKQGRNRAFQA 354

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY----------------REED 532
           +LPLRGKILNV  A   +I  N++I +++ ALG     +                     
Sbjct: 355 ILPLRGKILNVEKAQEHRILENEEIKNMITALGVSFNERKSLAFTTDDDGTESGPLNFSK 414

Query: 533 LRYEKVIIMTDADV 546
           LRY KVIIMT ADV
Sbjct: 415 LRYHKVIIMTXADV 428


>gi|308153106|dbj|BAJ22142.1| DNA gyrase subunit B [Actinokineospora riparia]
          Length = 403

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 135/408 (33%), Positives = 218/408 (53%), Gaps = 17/408 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L   V R   +++Q ++   P+  + +  +   + G
Sbjct: 1   SESYAVSGGLHGVGISVVNALSTRLEAVVKRDGYVWTQSYAASQPVDSVAR-GEATRELG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------ 258
           T ITF PDP+IF     F+A  + +  Q  A+L+  +      ++   ++          
Sbjct: 60  TSITFWPDPEIFETTT-FNAETVARRLQEMAFLNKGLTIVLRDERVSEDEAAADVDGQAA 118

Query: 259 --EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
             ++  +++PGGL+ +++     R  I  ++   + +  G     VE A+ W       +
Sbjct: 119 RVKERTYHYPGGLEDFVKHINHTREPIHKKVIAFEAKGTGV---EVEVAMQWNTGYSESV 175

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
            ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  DD+      I+S+ 
Sbjct: 176 YTFANTINTPEGGTHEEGFRAALTRVVNVYAREKKLLKEKDANLSGDDVREGLAAIVSIK 235

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + EP+F GQTK KL + +A+  V+    +    +  +NP +A  ++   +  ++ R+  R
Sbjct: 236 LAEPQFEGQTKQKLGNTEAKTFVQQTCNEWLADWFERNPSDAKTIVTKAVSSAQARMAAR 295

Query: 434 KQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           K RE V RK A+    LPGKL DC        EL+IVEGDSAGGSAK+ R    QA+LP+
Sbjct: 296 KARELVRRKGALDIGGLPGKLKDCRSTNPEECELYIVEGDSAGGSAKEGRESLFQAILPI 355

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           RGKI+NV  A  +++  N ++  L+ ALG   +  +    LRY K+++
Sbjct: 356 RGKIINVEKARIDRVLKNTEVQSLITALGTGIQEDFDVTKLRYHKIVL 403


>gi|295979523|dbj|BAJ07434.1| DNA gyrase subunit B [Oscillatoria mougeotii]
 gi|295979525|dbj|BAJ07435.1| DNA gyrase subunit B [Oscillatoria mougeotii]
          Length = 352

 Score =  224 bits (570), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 113/339 (33%), Positives = 175/339 (51%), Gaps = 4/339 (1%)

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AGY   IE+  + +G +TV D+GRGIPV+ H K   KS LE +LT LHAGGKF    Y++
Sbjct: 1   AGYCTHIEIDFNADGSVTVTDDGRGIPVDTHSK-TGKSALETVLTVLHAGGKFGGGGYKV 59

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS+ + VTV R    + Q+F RG P++ L  K    N+ GT + F 
Sbjct: 60  SGGLHGVGVSVVNALSEWVEVTVFRDKKEYRQRFERGTPVTELTSKPIKENRTGTSLRFF 119

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PD  IF     FD   +    +  AYL+  VK   + ++    K   P  E + + GG++
Sbjct: 120 PDTVIFTSGIEFDCDTIASRLRELAYLNAGVKVTLTDNRLELLKRETPRIETYCYEGGIR 179

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330
            Y+     ++  +  +I     E+    +  V         +  I  + N I T +GGTH
Sbjct: 180 EYIAYMNNDKQPLHEDIIYISGERSNV-QIEVALQWCTDAYSDTILGFANNIRTIDGGTH 238

Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             GL+  LTR +   A      +    ++  +++      ++S  + +PEF GQTKT+L 
Sbjct: 239 LEGLKTVLTRTLNTIARKRNKLKEGEANLGGENIREGLTAVISAKVPDPEFEGQTKTRLG 298

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
           + + +  V++ + +    YL  NP  A  ++E  I+  +
Sbjct: 299 NPEVRGIVDSLVGEALTEYLEFNPGIADAVIEKAIQAFK 337


>gi|33145992|emb|CAD57633.2| DNA gyrase subunit B [Vibrio splendidus]
          Length = 403

 Score =  224 bits (570), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 151/412 (36%), Positives = 227/412 (55%), Gaps = 15/412 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +  G P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGQIHTQTYHHGEPQAPLAVIGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +K GT I F P  + F +   F    L K  +  ++L+  V      ++E        
Sbjct: 61  T-DKTGTEIRFWPSEETFSNVL-FHYDILAKRLRELSFLNSGVSIKLIDERE------ED 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F F GG++ ++     N++ I  +IF    E++     TVE A+ W +     I  
Sbjct: 113 KSDHFMFEGGIQAFVDHLNTNKTPIIQKIFHFDHERED--GITVEVAMQWNDGYQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV + 
Sbjct: 171 FTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRK 434
           +P F+ QTK KLVS + +  VE A+ +    +L++NP EA  +   +I         R+ 
Sbjct: 231 DPRFSSQTKDKLVSSEVKSAVEQAMGEKLSEFLIKNPTEAKTVCTKIIDAARARDAARKA 290

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 REMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 350

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           K+LNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT+  
Sbjct: 351 KVLNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTEQT 402


>gi|302122546|gb|ADK92941.1| topoisomerase IV subunit B [Geobacillus subterraneus]
          Length = 396

 Score =  224 bits (570), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 140/408 (34%), Positives = 208/408 (50%), Gaps = 20/408 (4%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           F    Y+ SGGLHGVG SVVNALS+ L VT+ R   I+ Q+F  G       +K    NK
Sbjct: 1   FGQGGYKTSGGLHGVGASVVNALSEWLVVTIHRDGFIYRQRFENGGKPVTTLEKIGTTNK 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT I F+PDP IF     FD   L +  +  A+L   +K     ++           E 
Sbjct: 61  TGTIIQFKPDPAIFSTTV-FDYETLSERLRESAFLLKGLKIELVDER-------TGMCEV 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNT 321
           F++  G++ ++    E + ++         E+ G     VE+A  + +   E   S+ N 
Sbjct: 113 FHYENGIEAFVAYLNEEKDVLHPVA-YFAGEQNGI---EVEFAFQFHDGYSENVLSFVNN 168

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP-- 377
           + T +GGTHE+G + A+TR   +YA       ++  ++   D+      I+SV I E   
Sbjct: 169 VRTKDGGTHEAGAKTAMTRVFNEYARRVGLLKEKDKNLEGADIREGLSAIVSVRIPEHLL 228

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F GQTK KL + +A+  V+  + +   ++L +NP  +  L++  I   + R   RK RE
Sbjct: 229 QFEGQTKGKLGTSEARSAVDAVVSEQLTYFLQENPDVSAMLIKKAIRAYQAREAARKARE 288

Query: 438 VNRKTAIRKLR---LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
             R    RK +   L GKL           EL++VEGDSAGGSAKQ R+R  QAVLPLRG
Sbjct: 289 EARSGKKRKGKEALLSGKLTPAQGRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRG 348

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           K++N   A    I  N++I  ++ A+G    + +  ED+ Y+KVIIMT
Sbjct: 349 KVINTEKAKLGDILKNEEINTIIHAIGGGVGADFSLEDIHYDKVIIMT 396


>gi|22090904|dbj|BAC06743.1| gyrase B [Escherichia coli]
          Length = 390

 Score =  224 bits (570), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 145/401 (36%), Positives = 225/401 (56%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL    +     G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLELVIQRECKIHRQIYEHGVPQAPLAVTGETEK-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F+
Sbjct: 60  TMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    R
Sbjct: 230 QTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|19912139|dbj|BAB88381.1| DNA gyrase subunit B [Cytophaga sp. MBIC04665]
          Length = 391

 Score =  224 bits (570), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 143/395 (36%), Positives = 213/395 (53%), Gaps = 9/395 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+S VNALSD L  TV R+  I+ Q++ RG  L P++   +  +  GT +TF
Sbjct: 1   VSGGLHGVGVSCVNALSDHLKATVHREGKIWEQEYERGKTLYPVKTVGET-DITGTEVTF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD  IF     ++   L    +  AYL+  +    +  +   ++      E F+   GL
Sbjct: 60  LPDKSIFQQTTEYNYETLATRMRELAYLNKGITITLTDKRNKDDEG-NFIAETFHSNEGL 118

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
             +++     R+ +   + + + EK G     VE A+ + +     + SY N I T EGG
Sbjct: 119 SEFVKYLDSTRTPVIQHVISMEGEKNGIP---VEVAMIYNDSYAENLHSYVNNINTHEGG 175

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH SG R  LT  +KKYA+ +   + +      DD       I+SV + EP+F GQTKTK
Sbjct: 176 THLSGFRRGLTSTLKKYADTSGLLKNVKFEISGDDFREGLTAIVSVKVAEPQFEGQTKTK 235

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIR 445
           L + +    V  A+ +    YL +NP +A  +++ VI  ++ R   RK RE+  RKT + 
Sbjct: 236 LGNREVTSAVSQAVAEMLTDYLEENPNDAKTIVQKVILAAQARHAARKAREMVQRKTVMS 295

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV  A   
Sbjct: 296 IGGLPGKLSDCSETDPAVCEIFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQH 355

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           K+  N++I ++  ALG    ++     L   K+  
Sbjct: 356 KVFENEEIKNMFTALGITIGTEEDPRALNLSKLRY 390


>gi|110264815|gb|ABG56983.1| DNA gyrase beta subunit [Aliivibrio fischeri]
 gi|110264817|gb|ABG56984.1| DNA gyrase beta subunit [Aliivibrio fischeri]
          Length = 400

 Score =  224 bits (570), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 153/410 (37%), Positives = 233/410 (56%), Gaps = 15/410 (3%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I  Q +  G P +PL    K  
Sbjct: 1   GKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIHRAGEIHQQVYHHGEPEAPLAVIGKT- 59

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
           +  GT+I F P  + F +   F    L K  +  ++L+  V       +E        + 
Sbjct: 60  DTTGTKIRFWPSEETFTNVV-FVYEILAKRLRELSFLNSGVSIKLQDMRE------EDKA 112

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
           + F + GG++ ++Q    N++ I  ++F   +E++     +VE ++ W +     I  + 
Sbjct: 113 DHFMYEGGIQAFVQHLNRNKTPIHQKVFHFDSERED--GISVEVSMQWNDGFQENIYCFT 170

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P
Sbjct: 171 NNIPQRDGGTHLAGFRSALTRTLNTFMDKEGFSKKAKAATSGDDAREGLTAVVSVKVPDP 230

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR- 436
           +F+ QTK KLVS + +  VE+A+ +    +L +NP EA  +   +I+ +  R   RK R 
Sbjct: 231 KFSSQTKDKLVSSEVKSAVESAMGEKLSEFLAENPSEAKMVCSKIIDAARAREAARKARE 290

Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKI
Sbjct: 291 MTRRKGALDIAGLPGKLADCQEKDPGLSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKI 350

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           LNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDAD
Sbjct: 351 LNVEKARFDKMLSSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMTDAD 400


>gi|2196826|gb|AAB80830.1| DNA gyrase beta-subunit [Shewanella algae]
          Length = 419

 Score =  224 bits (570), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 145/418 (34%), Positives = 227/418 (54%), Gaps = 16/418 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T L   GKF+  + ++SGGLHGVG+SVVNALS++L +T+ R   ++ Q +  G P 
Sbjct: 1   EVIMTVLRPLGKFEEPSKQVSGGLHGVGVSVVNALSEKLQLTIRRDGKVYEQFYKHGEPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            P+++  +  N  GT I F P  + F D   F    L K  +  ++L+  V      +++
Sbjct: 61  EPIKEIGEATN-TGTEIRFWPSQETFTD-TEFHYELLAKRIRELSFLNSGVGIRLIDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             +       E F++ GG K +++    N++ ++ ++F    E++     TVE A+ W +
Sbjct: 119 NKD-------EFFHYEGGPKAFVEYLNRNKTPVNKDVFHFSQERED--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAV 367
                I    N I   +GGTH +G R ALTR +  Y E      K   +   DD      
Sbjct: 170 GFQESIFCCTNNIPQRDGGTHLAGFRAALTRNLNNYMENEGFNKKGKTNATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++ V + +P+F  QTK KLVS + +  VE  + +  + YL++NP +A  ++  +I+   
Sbjct: 230 AVVCVKVPDPKFRSQTKDKLVSSEVKGAVEQTMGEKLNDYLLENPADAKMIVGKIIDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R  +    RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARGAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR-SQYREEDLRYEKVIIMTD 543
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC            RY++ ++MTD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGLDVSDPVQTRYQEFMVMTD 407


>gi|60459466|gb|AAX20069.1| DNA gyrase subunit B [Leptospira borgpetersenii serovar Tarassovi]
 gi|60459472|gb|AAX20072.1| DNA gyrase subunit B [Leptospira weilii serovar Celledoni]
 gi|60459474|gb|AAX20073.1| DNA gyrase subunit B [Leptospira borgpetersenii serovar Ballum]
 gi|60459476|gb|AAX20074.1| DNA gyrase subunit B [Leptospira borgpetersenii serovar Javanica]
          Length = 141

 Score =  224 bits (570), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 80/142 (56%), Positives = 106/142 (74%), Gaps = 1/142 (0%)

Query: 51  ILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVV 110
           ILEGLE VR RPGMYIG  DE  LH +  EV+DN++DE +AG+   I +S+  N  + V 
Sbjct: 1   ILEGLEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEIRISILPNNIIEVK 60

Query: 111 DNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELH 170
           DNGRGIPV+ HP     ST+E+++T LHAGGKF+N  Y++SGGLHGVG+SVVNALS+ L 
Sbjct: 61  DNGRGIPVDIHP-DKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYLE 119

Query: 171 VTVARQNTIFSQKFSRGIPLSP 192
           V V ++  I++QK+ +GIP+SP
Sbjct: 120 VEVHQKGKIYTQKYEKGIPVSP 141


>gi|270717092|ref|ZP_06223222.1| DNA gyrase, B subunit [Haemophilus influenzae HK1212]
 gi|270315571|gb|EFA27782.1| DNA gyrase, B subunit [Haemophilus influenzae HK1212]
          Length = 125

 Score =  224 bits (570), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 67/125 (53%), Positives = 98/125 (78%), Gaps = 2/125 (1%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95
           +++ +DNY ASSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   SETTNDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCS 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
            I V++  +  ++V D+GRGIPV+ HP+    S  E+I+T LHAGGKFD+++Y++SGGLH
Sbjct: 62  DIIVTIHDDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120

Query: 156 GVGIS 160
           GVG+S
Sbjct: 121 GVGVS 125


>gi|198042680|gb|ACH81165.1| GyrB [Pseudoalteromonas luteoviolacea]
          Length = 379

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 141/389 (36%), Positives = 226/389 (58%), Gaps = 14/389 (3%)

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L +T+ R   +  QK++ G+P +PL 
Sbjct: 1   TVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLQLTIRRDGQVHQQKYTMGVPDAPLA 60

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
              +     GT + F P P+ F D   F    L K  +  ++L+  V    + ++E    
Sbjct: 61  VIGEA-ETTGTELRFWPSPETFSDIN-FHYDILAKRLRELSFLNSGVSIILTDERE---- 114

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313
               +++ F + GG++ +++     ++ +   +F   +E++     +VE ++ W +    
Sbjct: 115 --ENKQDHFKYEGGIQAFVEYLNRKKTPVHQSVFHFTSERED--GISVEVSMQWNDGFQE 170

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILS 371
            I  + N I   +GGTH +G R ALTR +  Y E      K   S   DD       ++S
Sbjct: 171 NIYCFTNNIPQRDGGTHFAGFRAALTRTLNTYMEKEGFNKKNKTSATGDDAREGLTAVVS 230

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V + +P+F+ QTK KLVS + +  VE A+ +  + +L++NP +A  ++  +++ +  R  
Sbjct: 231 VKVPDPKFSSQTKDKLVSSEVKGAVEQAMAEKLNEFLLENPQDAKTVVNKIVDAARAREA 290

Query: 432 RRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            RK RE+ R+   +    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+L
Sbjct: 291 ARKAREMTRRKGVMDLAGLPGKLADCQEKDPGLSELYIVEGDSAGGSAKQGRNRKNQAIL 350

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQA 519
           PL+GKILNV  A  +K+ ++Q++  L+ A
Sbjct: 351 PLKGKILNVEKARFDKMLSSQEVATLITA 379


>gi|19912097|dbj|BAB88360.1| DNA gyrase subunit B [Cytophaga sp. I-377]
          Length = 391

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 143/395 (36%), Positives = 212/395 (53%), Gaps = 9/395 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+S VNALSD L  TV R   I+ Q++ RG  L P++   +  +  GT +TF
Sbjct: 1   VSGGLHGVGVSCVNALSDHLKATVHRDGKIWQQEYERGKTLYPVKTVGET-DITGTEVTF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD  IF     ++   L    +  AYL+  +    +  +   ++      E F+   GL
Sbjct: 60  SPDKSIFQQTTEYNYDTLATRMRELAYLNKGITVTLTDKRNKDDEG-NDISETFHSDQGL 118

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
             +++     R+ +   + + + EK G     VE A+ + +     + SY N I T EGG
Sbjct: 119 SEFVRYLDSTRTPVIQHVISMEGEKNGIP---VEVAMIYNDSYAENLHSYVNNINTHEGG 175

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH SG R  LT  +KKYA+ +   + +      DD       I+SV + EP+F GQTKTK
Sbjct: 176 THLSGFRRGLTGTLKKYADNSGLLKNVKFEISGDDFREGLTAIVSVKVAEPQFEGQTKTK 235

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIR 445
           L + +    V  A+ +    YL +NP +A  +++ VI  ++ R   RK RE+  RKT + 
Sbjct: 236 LGNREVTSAVSQAVSEMLTDYLEENPNDAKTIVQKVILAAQARHAARKAREMVQRKTVMS 295

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV  A   
Sbjct: 296 IGGLPGKLSDCSETDPAQCEIFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQH 355

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           K+  N++I ++  ALG    ++     L   K+  
Sbjct: 356 KVFENEEIKNMFTALGITIGTEEDPRALNLSKLRY 390


>gi|20387178|dbj|BAB91289.1| gyrase B [Streptomyces luteosporeus]
          Length = 399

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 139/401 (34%), Positives = 215/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL+K E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGFRWTQDYKLGVPTAPLQKNEAT-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  +    + ++    ++ G P    +
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLTISLTDERPAHVDEEGKPLAVRY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           ++ GG+  +++     +  +          +      ++E ++ W  +    + S+ NTI
Sbjct: 119 HYEGGISDFVRYLNSRKGEVVHPTVIAFEAEDKERMLSLEVSMQWNTQYTEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I +YA   +   ++  ++  DD+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTGLINRYARDKKLLWEKDDNLTGDDIREGLTAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+  + +    +L +NP EA  ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKVVHEELTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLETASLPGKLSDCQSNDPAKCEIFIVEGDSAGGSAKSGRNPEYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  NQ+I  L+ A G      +  E LRY K+I+
Sbjct: 359 EKARIDKILQNQEIQALISAFGTGVHEDFDIEKLRYHKIIL 399


>gi|159146574|gb|ABW90731.1| DNA gyrase beta subunit [Vibrio vulnificus]
 gi|159146592|gb|ABW90740.1| DNA gyrase beta subunit [Vibrio vulnificus]
          Length = 398

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 147/408 (36%), Positives = 226/408 (55%), Gaps = 15/408 (3%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R     SQ +  G+P +PL      
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEKVLLTIHRGGHTHSQTYRHGVPDAPLAIIGDT 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
               GT + F P  + F +   F    L K  +  ++L+  V      ++E  +K     
Sbjct: 61  EK-TGTTVRFWPSAETFTN-IEFHYDILAKRLRELSFLNSGVSIKLFDEREEDKK----- 113

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
            + F + GG++ ++     N++ I  ++F    E++      VE A+ W +     I  +
Sbjct: 114 -DHFMYEGGIQAFVTHLNRNKTPIHEKVFHFNAERED--GIAVEVAMQWNDGFQENIYCF 170

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +G R ALTR +  Y +      K   +   DD       ++SV + +
Sbjct: 171 TNNIPQRDGGTHLAGFRAALTRTLNSYMDKEGYSKKAKTATSGDDAREGLTAVVSVKVPD 230

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQ 435
           P+F+ QTK KLVS + +  VE+ + D  + +L ++P EA  +   +I+        R+ +
Sbjct: 231 PKFSSQTKDKLVSSEVKSAVESFMADKLNDFLAEHPSEAKTVCSKIIDAARAREAARKAR 290

Query: 436 REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
               RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GK
Sbjct: 291 EMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGK 350

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
           ILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 351 ILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 398


>gi|20387204|dbj|BAB91302.1| gyrase B [Streptomyces parvisporogenes]
          Length = 399

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 138/401 (34%), Positives = 215/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL+K E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVRTDGFRWTQDYKLGVPTAPLQKNEAT-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  +    + ++    ++ G P    +
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLTISLTDERPAHVDEEGKPLTVRY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTI 322
           ++ GG+  +++     +  +          +      ++E ++ W  +  E + S+ NTI
Sbjct: 119 HYEGGISDFVRYLNSRKGEVVHPSVIAFESEDKERLLSLEVSMQWNTQYSEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I +YA   +   ++  ++  DD+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGDDIREGLTAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+  + +    +L +NP EA+ ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKVVHEQLTDWLDRNPNEASDIIRKSIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLETASLPGKLSDCQSNEPAKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  N +I  L+ A G      +    LRY K+I+
Sbjct: 359 EKARIDKILQNTEIQALISAFGTGVHEDFDISKLRYHKIIL 399


>gi|20387174|dbj|BAB91287.1| gyrase B [Streptomyces lilacinus]
          Length = 399

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 137/401 (34%), Positives = 214/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL+K E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGFRWTQDYKLGVPTAPLQKNEAT-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  +    + ++ +  ++ G      +
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLTISLTDERPDHVDEEGKALTVRY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           ++ GG+  +++     +  +          +      ++E ++ W  +    + S+ NTI
Sbjct: 119 HYEGGISDFVRYLNSRKGELVHPTVIAFEAEDKERMLSLEVSMQWNTQYTEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I +YA   +   ++  ++  DD+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGDDIREGLTAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+  + +    +L +NP EA  ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKVVHEQLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLETASLPGKLSDCQSNDPAKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  NQ+I  L+ A G      +    LRY K+I+
Sbjct: 359 EKARIDKILQNQEIQALISAFGTGVHEDFDISKLRYHKIIL 399


>gi|156901546|gb|ABU96763.1| GyrB [Escherichia coli]
          Length = 389

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 145/400 (36%), Positives = 224/400 (56%), Gaps = 16/400 (4%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++
Sbjct: 60  MVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHY 112

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I  
Sbjct: 113 EGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQ 169

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ Q
Sbjct: 170 RDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQ 229

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRK 441
           TK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK
Sbjct: 230 TKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRK 289

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  
Sbjct: 290 GALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 349

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
           A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 ARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 389


>gi|237843801|ref|XP_002371198.1| DNA gyrase subunit B, putative [Toxoplasma gondii ME49]
 gi|211968862|gb|EEB04058.1| DNA gyrase subunit B, putative [Toxoplasma gondii ME49]
          Length = 1257

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 87/162 (53%), Positives = 106/162 (65%), Gaps = 1/162 (0%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y + SIR+LEGLEPVRMRPGMYIG TD + LHHL  E IDNA+DEV  G    I V L  
Sbjct: 257 YTSDSIRVLEGLEPVRMRPGMYIGSTDSEGLHHLVWEAIDNAVDEVENGDCRRIVVVLHA 316

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +  +TV D+GRGIP + HP+    S LE + T LHAGGKF  ++Y  +GGLHGVG SVVN
Sbjct: 317 DRRVTVADDGRGIPCDVHPQ-TGLSALETVFTKLHAGGKFSPASYAFAGGLHGVGSSVVN 375

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ALS +L V+V R   + +  FSRG  +SPL  +      RG 
Sbjct: 376 ALSSQLRVSVLRDGKLHAISFSRGQVVSPLTVQTSPSLSRGN 417



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 100/248 (40%), Positives = 137/248 (55%), Gaps = 12/248 (4%)

Query: 347  ELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
                ++++++I  + L    VG++S+ +RE EF GQTK KL +   +  VE  + D   +
Sbjct: 771  PQNSHEKSLNIPGEFLREGLVGVVSLKMREAEFEGQTKKKLGNKKVRGIVEELVTDALLN 830

Query: 407  YLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL----PGKLADCSQNIAH 462
            Y  ++P    KLL+            +  R+  R             PGKL+DCS   A 
Sbjct: 831  YFERHPQNLQKLLQKATAARAAAAAAKAARDFARAKQQSSSLHLTLLPGKLSDCSPTNAR 890

Query: 463  GT---ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA-GSEKIRNNQQIMDLVQ 518
                 ELFIVEG+SA GSAKQAR+R  QA+LPLRGKILNV       +I  N+++  LV 
Sbjct: 891  ERLSKELFIVEGESAAGSAKQARDRRTQAILPLRGKILNVEKLGNFARIFENEELKALVA 950

Query: 519  ALGCRTRS----QYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ALG             E LRY +VII+TDADVDGAH+ SLLLTFF++   +L  Q  +F+
Sbjct: 951  ALGISVTKAGEVSADLEGLRYSRVIILTDADVDGAHVRSLLLTFFFRLQPELFRQGRIFV 1010

Query: 575  ISPPLFRI 582
              PPLF+I
Sbjct: 1011 ACPPLFKI 1018



 Score = 82.2 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 8/79 (10%)

Query: 610  GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669
              + + RFKGLGEM   QL+ T M    R L ++ +     +          LMG   D 
Sbjct: 1183 PGVTLQRFKGLGEMQPEQLRRTTMSPVTRILKKISVADAEAAEAAVAS----LMGDDVDA 1238

Query: 670  RFKFIQERAS---FIDDVG 685
            R K I E A+   F++++ 
Sbjct: 1239 RKKIIFE-ANRDVFVEELD 1256


>gi|86169573|gb|ABC87026.1| DNA gyrase subunit B [Fructobacillus pseudoficulneus]
          Length = 393

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 142/401 (35%), Positives = 215/401 (53%), Gaps = 13/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL-EKKEKVRNKR 203
              Y++SGGLHGVG SVVNALS  L V V R   ++   F  G   +P+ +K   +  +R
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTTLDVQVVRDGQLYYMDFETGHVKTPMTKKDGPLPIER 60

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F+PDP IF +   ++   LL   +  A+L+  ++      +        P KE F
Sbjct: 61  GTIVHFKPDPDIFQETTVYNYQTLLTRVRELAFLNKGLRISIEDKRSD-----EPLKESF 115

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTI 322
           +F GG+K Y+    E +  +  E    + E+ G     VE A+ +       + ++ N I
Sbjct: 116 HFEGGIKEYVSYLDEEKQALFDEPVYVEGEENGI---VVEVALQYTTGVKENLKTFTNNI 172

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE+G + ALTR I  YA   +  +    S+  +D+      I+S+   +P+F 
Sbjct: 173 NTYEGGTHETGFKTALTRVINDYARKQKLIKEGAESLTGEDVREGMTAIVSIKHPDPQFE 232

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + DA++  +    + F  ++++NP  A +++E        RL  ++ RE+  
Sbjct: 233 GQTKTKLGNSDARQATDRMFSETFARFMLENPAVAKQIVEKGSLAQRARLSAKRAREMTR 292

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +++ +    LPGKLAD +      +ELFIVEGDSAGGSAKQ RNR  QA+LP+RGKILNV
Sbjct: 293 KQSGLEISNLPGKLADNTSKDPEISELFIVEGDSAGGSAKQGRNRLTQAILPIRGKILNV 352

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +++  N++I  L  ALG      +      Y K+II
Sbjct: 353 GKATLDRVLANEEIRSLFTALGSGFGDDFDVSKANYHKIII 393


>gi|221481580|gb|EEE19962.1| DNA gyrase subunit B, putative [Toxoplasma gondii GT1]
          Length = 1271

 Score =  223 bits (569), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 87/161 (54%), Positives = 106/161 (65%), Gaps = 1/161 (0%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y + SIR+LEGLEPVRMRPGMYIG TD + LHHL  E IDNA+DEV  G    I V L  
Sbjct: 266 YTSDSIRVLEGLEPVRMRPGMYIGSTDSEGLHHLVWEAIDNAVDEVENGDCRRIVVVLHA 325

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +  +TV D+GRGIP + HP+    S LE + T LHAGGKF  ++Y  +GGLHGVG SVVN
Sbjct: 326 DRRVTVADDGRGIPCDVHPQ-TGLSALETVFTKLHAGGKFSPASYAFAGGLHGVGSSVVN 384

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           ALS +L V+V R   + +  FSRG  +SPL  +      RG
Sbjct: 385 ALSSQLRVSVLRDGKLHAISFSRGQVVSPLTVQTSPSLSRG 425



 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 100/248 (40%), Positives = 137/248 (55%), Gaps = 12/248 (4%)

Query: 347  ELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
                ++++++I  + L    VG++S+ +RE EF GQTK KL +   +  VE  + D   +
Sbjct: 785  PQNSHEKSLNIPGEFLREGLVGVVSLKMREAEFEGQTKKKLGNKKVRGIVEELVTDALLN 844

Query: 407  YLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL----PGKLADCSQNIAH 462
            Y  ++P    KLL+            +  R+  R             PGKL+DCS   A 
Sbjct: 845  YFERHPQNLQKLLQKATAARAAAAAAKAARDFARAKQQSSSLHLTLLPGKLSDCSPTNAR 904

Query: 463  GT---ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA-GSEKIRNNQQIMDLVQ 518
                 ELFIVEG+SA GSAKQAR+R  QA+LPLRGKILNV       +I  N+++  LV 
Sbjct: 905  ERLSKELFIVEGESAAGSAKQARDRRTQAILPLRGKILNVEKLGNFARIFENEELKALVA 964

Query: 519  ALGCRTRS----QYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ALG             + LRY +VII+TDADVDGAHI SLLLTFF++   +L  Q  +F+
Sbjct: 965  ALGISVTKAGEVSADLDGLRYSRVIILTDADVDGAHIRSLLLTFFFRLQPELFRQGRIFV 1024

Query: 575  ISPPLFRI 582
              PPLF+I
Sbjct: 1025 ACPPLFKI 1032



 Score = 82.2 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 8/79 (10%)

Query: 610  GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669
              + + RFKGLGEM   QL+ T M    R L ++ +     +          LMG   D 
Sbjct: 1197 PGVTLQRFKGLGEMQPEQLRRTTMSPVTRILKKISVADAEAAEAAVAS----LMGDDVDA 1252

Query: 670  RFKFIQERAS---FIDDVG 685
            R K I E A+   F++++ 
Sbjct: 1253 RKKIIFE-ANRDVFVEELD 1270


>gi|41387042|gb|AAS01479.1| GyrB [Bacillus sp. H-01]
          Length = 390

 Score =  223 bits (569), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 145/400 (36%), Positives = 221/400 (55%), Gaps = 14/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS EL V V R+  I  QK+ RGIP++ L+      ++ G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F+PDP+IF +   ++   L    +  A+L+  +K      +E  +K      +EF+
Sbjct: 60  TITRFKPDPEIFQETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFH 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+K+Y++    ++  I  E    +  K G     VE ++ + E       S+ N I 
Sbjct: 114 YEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIH 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G + ALTR I  Y       +    ++  +D+      I+S+    P+F G
Sbjct: 171 TYEGGTHEVGFKTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNR 440
           QTKTKL + +A+   E+   + F+ +L++NP  A K++E   +        ++ +    R
Sbjct: 231 QTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS      +E++IVEGDSAGGSAKQ R+R +QA+LPL+GKI+NV 
Sbjct: 291 KSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHSQAILPLKGKIINVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +KI +N ++  ++ A+G      +  E  RY KVII
Sbjct: 351 KARLDKILSNDEVRTIITAIGTNIGGDFDIEKARYHKVII 390


>gi|20387166|dbj|BAB91283.1| gyrase B [Streptomyces netropsis]
 gi|308152555|dbj|BAJ22256.1| DNA gyrase subunit B [Streptomyces netropsis]
          Length = 399

 Score =  223 bits (569), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 138/401 (34%), Positives = 215/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL+K E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGYRWTQDYKLGVPTAPLQKNEAT-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  ++   +  + +  ++ G P   ++
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLRIALTDTRADHVDEEGKPLTVDY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTI 322
           ++ GG+  +++     +  +          +      +VE A+ W  +  E + S+ NTI
Sbjct: 119 HYEGGIVDFVKYLNSRKGELIHPTVIDIEAEDKERMLSVEIAMQWNSQYSEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I +YA   +   ++  ++  +D+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGEDIREGLTAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+    +    +L +NP EA  ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKVAHEHLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  N ++  L+ A G      +    LRY K+I+
Sbjct: 359 EKARIDKILQNTEVQALISAFGTGVHEDFDISKLRYHKIIL 399


>gi|285804188|gb|ADC35602.1| DNA gyrase subunit B [Geobacillus thermocatenulatus]
          Length = 394

 Score =  223 bits (569), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 149/404 (36%), Positives = 224/404 (55%), Gaps = 14/404 (3%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           F    Y++SGGLHGVG SVVNALS+ L V V R   I  Q++ RG P + L+   +  ++
Sbjct: 1   FGGGGYKVSGGLHGVGASVVNALSEWLEVYVYRDGKIHYQRYERGEPSTDLQVIGET-DR 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT   F+PDP+IF +   FD   L    +  A+L+  +K   + ++  + K        
Sbjct: 60  TGTTTRFKPDPEIFTETTEFDYETLATRLRELAFLNRGLKITLTDERVDSRKNE------ 113

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           + + GG+++Y++     R ++  E      E+ G     VE A+ + +     I S+ N 
Sbjct: 114 YIYEGGIRSYVRHLNRTREVLHEEPIYIAGERDGI---AVEIALQYNDGYTSNIYSFVNN 170

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I T EGGTHESG ++ALTR I  YA   Q   +   ++  +D+      I+S+    P+F
Sbjct: 171 IHTHEGGTHESGFKMALTRIINDYARKQQIFKENDANLTGEDVREGLTAIVSIKHPSPQF 230

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREV 438
            GQTKTKL + DA+   +    + F+ +L++NP  A K++E  ++        ++ +   
Sbjct: 231 EGQTKTKLGNSDARTVTDAVFSEQFEMFLLENPTIARKIVEKGMMAARARLAAKKARELT 290

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK+A+    LPGKLADCS      +EL++VEGDSAGGSAKQ R+R  QA+LPLRGKILN
Sbjct: 291 RRKSALDISNLPGKLADCSSRDPSISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKILN 350

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           V  A  +KI +N ++  ++ ALG     ++     RY KVIIMT
Sbjct: 351 VEKARLDKILSNNEVRAIITALGTGIGEEFDISKARYHKVIIMT 394


>gi|110612655|gb|ABG78290.1| GyrB [uncultured bacterium]
          Length = 400

 Score =  223 bits (569), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 150/411 (36%), Positives = 233/411 (56%), Gaps = 16/411 (3%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD+++Y++SGGLHGVG+SVVNALS++LH+ + R N I+ Q +  G P +PL       
Sbjct: 1   GKFDDNSYKVSGGLHGVGVSVVNALSEQLHLKIKRNNKIYEQHYIHGEPQAPLAITGDA- 59

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
           +  GT I F+P    F +   F    L K  +  ++L+  +    + +++        + 
Sbjct: 60  DTTGTSIWFKPSANTFNNI-EFHYDILAKRLRELSFLNSGICINLNDERDAE------KH 112

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYC 319
           + F + GG+  +++    N++ I   IF+ + EK G     ++ ++       E    + 
Sbjct: 113 DTFLYNGGISAFVEHLNRNKTPIIPMIFSMQAEKDGI---GIDLSMQRNNTYQENLYCFT 169

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH +G R ALTR +  Y E      K  I+   DD       +LSV + +P
Sbjct: 170 NNIPQKDGGTHLAGFRSALTRTLNNYIENEGYAKKAKITTTGDDAREGLTAVLSVKVPDP 229

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-R 436
           +F+ QTK KLVS + +  VE+A+ + F+ +L++NP  A  ++  +I+ +  R   R+   
Sbjct: 230 KFSSQTKDKLVSSEVKSAVESAVAEKFNDFLLENPQVAKIIVGKMIDAARAREAARRARD 289

Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ R+R  QA+LPL+GKI
Sbjct: 290 MTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRDRKYQAILPLKGKI 349

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADV 546
           LNV  A  +K+  +Q++  L+ ALGC     +Y  + +RY ++IIMTDADV
Sbjct: 350 LNVEKARFDKMLASQEVATLITALGCGIGSDEYDPDKVRYHRIIIMTDADV 400


>gi|164690659|dbj|BAF98613.1| gyrase B [Sporolactobacillus terrae]
          Length = 389

 Score =  223 bits (569), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 152/400 (38%), Positives = 218/400 (54%), Gaps = 15/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS  + V V R   ++ Q++ RG P + L+      +K G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTTMWVKVYRNGHVYYQEYHRGKPAADLKIIGD-SDKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F PDP+IF D   FD   L    +  A+L+  ++      +   +K      E F+
Sbjct: 60  TTTHFEPDPEIFTDTTTFDYDTLRVRVRELAFLNKNIRISIEDRRAEDKK------ETFH 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTIL 323
           + GG+++Y++    ++ +I   I   + EK G     VE A+ +          + N I 
Sbjct: 114 YEGGIRSYVEFLNRSKEVIHQPIDL-EGEKDGI---KVEIAMQYNSGFSSQLYSFANNIH 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G +VALTR I  Y    Q  +    ++  DD+      I+SV   +P+F G
Sbjct: 170 THEGGTHEYGFKVALTRVINDYGRKNQFIKGSDSNLTGDDVREGLTAIVSVKHPDPQFEG 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + + +   +    + F  +L++NP  A  ++E  I  S  R   +K RE   R
Sbjct: 230 QTKTKLGNSEVRTITDTLFSEAFSRFLLENPDVARIIVEKGIVASRARSAAKKARELTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+++    LPGKLADCS   A  +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 290 KSSLEVSSLPGKLADCSSKDASISELYIVEGDSAGGSAKQGRDRLFQAILPLRGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +KI +N +I  ++ ALG     ++  E  RY K+II
Sbjct: 350 KARLDKILSNAEIRAMITALGTGIGDEFNLEKARYHKIII 389


>gi|145309491|dbj|BAF56643.1| DNA gyrase subunit B [Alicyclobacillus kakegawensis]
          Length = 389

 Score =  223 bits (569), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 142/400 (35%), Positives = 223/400 (55%), Gaps = 15/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            S Y++SGGLHGVG SVVNALS+ L V V R   +  Q++ RG+PL  L+      +  G
Sbjct: 1   GSGYKVSGGLHGVGASVVNALSEWLRVEVHRDGKVHVQEYERGVPLYDLKVVG-TTDHTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T ++FRPDP+IF +   F +  L    +  A+L+  ++  ++ +          +   + 
Sbjct: 60  TIVSFRPDPEIFTETTEFQSDILQGRLRELAFLNAGLEIVYNDE-------CEGKSRTYC 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTIL 323
           + GG+  +++   +++ ++  +    K  ++     +VE A+ + +    +   + N I 
Sbjct: 113 YSGGVSEFVRFLNKSKDVLHEDPVFVKGVRQDV---SVEIALQYNDGYAAVLYSFANNIH 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAG 381
           T EGG+HE+G + ALTR I  YA      +    ++  DD+      I+SV + +P+F G
Sbjct: 170 THEGGSHEAGFKAALTRVINDYARKMNLLKDNESNLTGDDVREGLTAIVSVKVPDPQFEG 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + + +  V+    D F  +L QNP  A ++++  I  +  R   RK RE   R
Sbjct: 230 QTKTKLGNSEVRGIVDGLFSDKFYAFLEQNPSVARRIVDKSITAARAREAARKAREVTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS   A   EL+IVEGDSAGGSAKQ R+R+ QA+LPLRGKI+NV 
Sbjct: 290 KSALEVSSLPGKLADCSSKDASVCELYIVEGDSAGGSAKQGRDRNFQAILPLRGKIINVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +KI +N +I  ++ A+G     ++     RY K++I
Sbjct: 350 KARLDKILSNAEIRSIITAIGTGIGDEFDIAKARYHKIVI 389


>gi|110612643|gb|ABG78284.1| GyrB [uncultured bacterium]
          Length = 395

 Score =  223 bits (569), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 148/407 (36%), Positives = 232/407 (57%), Gaps = 17/407 (4%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD+++Y++SGGLHGVG SVVNALS+ELH+TV R   +  Q +  G+P +P+ +       
Sbjct: 1   FDDNSYKVSGGLHGVGASVVNALSEELHMTVRRNGRVHEQHYRHGVPDAPMAETGDAT-T 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT+I F+P  + F +   F    L K  +  +YL+  V      ++          ++ 
Sbjct: 60  TGTQIWFKPSAETFSNI-EFHYDILAKRLRELSYLNSGVCIHLYDERSQ-------RQDT 111

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNT 321
           F++ GG+  +++   +N+++I   +F+  TEK       VE ++ W +   E    + N 
Sbjct: 112 FHYEGGITAFVEHLNKNKNVIIPTVFSMITEKDNI---VVELSMQWNDSYQETLYCFTNN 168

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R ALTR +  Y E      K  +S   DD       +LSV + +P+F
Sbjct: 169 IPQRDGGTHMAGFRAALTRTLNNYIESEGYAKKAKVSPTGDDAREGLTAVLSVKVPDPKF 228

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EV 438
           + QTK KLVS + +  VE+ + + F+ +L++NP  A  ++  + + +  R   R+ R   
Sbjct: 229 SSQTKDKLVSSEVKAVVESGVAEKFNDFLLENPSCAKAIVGKITDAARAREAARRAREMT 288

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILN
Sbjct: 289 RRKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILN 348

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           V  A  +K+ ++Q++  L+ ALGC     +Y  + +RY ++IIMTDA
Sbjct: 349 VEKARFDKMLSSQEVATLITALGCGIGPDEYDPDKVRYHRIIIMTDA 395


>gi|29652747|gb|AAO87343.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652809|gb|AAO87374.1| DNA gyrase B [Listeria monocytogenes]
          Length = 194

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 86/190 (45%), Positives = 117/190 (61%), Gaps = 2/190 (1%)

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 7   RKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILN 66

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 67  VEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTL 126

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+K
Sbjct: 127 FYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYK 184

Query: 619 GLGEMLASQL 628
           GLGEM   QL
Sbjct: 185 GLGEMNPEQL 194


>gi|29652761|gb|AAO87350.1| DNA gyrase B [Listeria monocytogenes]
          Length = 193

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 86/190 (45%), Positives = 117/190 (61%), Gaps = 2/190 (1%)

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 6   RKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILN 65

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 66  VEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTL 125

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+K
Sbjct: 126 FYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYK 183

Query: 619 GLGEMLASQL 628
           GLGEM   QL
Sbjct: 184 GLGEMNPEQL 193


>gi|20387142|dbj|BAB91271.1| gyrase B [Streptomyces cinnamoneus]
          Length = 399

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 138/401 (34%), Positives = 214/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL+K E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGYRWTQDYKLGVPTAPLQKNEAT-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  ++   +  + +  ++ G P    +
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLRISLTDLRADHVDEEGKPLSVGY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTI 322
           ++ GG+  ++      +  +          +      +VE A+ W  +  E + S+ NTI
Sbjct: 119 HYEGGIVDFVTYLNSRKGELIHPTVIDIEAEDKERLLSVEVAMQWNSQYSEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I +YA   +   ++  ++  +D+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGEDIREGLTAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+  + +    +L +NP EA  ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKVVHEHLTDWLDRNPNEAADIIRKGIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  N ++  L+ A G      +    LRY K+I+
Sbjct: 359 EKARVDKILQNTEVQALISAFGTGVHEDFDIAKLRYHKIIL 399


>gi|20387198|dbj|BAB91299.1| gyrase B [Streptomyces olivoverticillatus]
          Length = 399

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 140/401 (34%), Positives = 216/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V R    ++Q +  G P +PL+K E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKRDGFRWTQDYKLGAPTAPLQKNEAT-DESG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  ++   +  + +  ++ G P   E+
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLARRFQEMAFLNKGLRISLTDFRADHVDEEGKPLTVEY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTI 322
           ++ GG+  +++     +  +          +      +VE A+ W  +  E + S+ NTI
Sbjct: 119 HYEGGIVDFVKYLNSRKGELIHPTVIDVEAEDKERMLSVEIAMQWNSQYSEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I +YA   +   ++  ++  +D+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGEDIREGLTAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+  + +    +L +NP EA  ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKVVHEHLTDWLDRNPNEAADIIRKGIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  N ++  L+ A G      +    LRY K+I+
Sbjct: 359 EKARVDKILQNTEVQALISAFGTGVHEDFDIAKLRYHKIIL 399


>gi|126035342|gb|ABN72424.1| gyrase B subunit [Shigella sonnei]
          Length = 389

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 145/400 (36%), Positives = 224/400 (56%), Gaps = 16/400 (4%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++
Sbjct: 60  MVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHY 112

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I  
Sbjct: 113 EGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQ 169

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ Q
Sbjct: 170 RDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQ 229

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRK 441
           TK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK
Sbjct: 230 TKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRK 289

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  
Sbjct: 290 GALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 349

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
           A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 ARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 389


>gi|21238923|dbj|BAB96567.1| DNA gyrase subunit B [Agromyces ramosus]
          Length = 411

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 140/413 (33%), Positives = 207/413 (50%), Gaps = 19/413 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG SVVNALS  L V V RQ ++++Q ++ G+P +PL +     +  G
Sbjct: 1   GGGYAVSGGLHGVGSSVVNALSSRLDVEVRRQGSVWTQSYTVGVPDAPLAE-GGASDATG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI------- 257
           T ITF P P +F     FD   L    Q  A+L+  ++   +  +               
Sbjct: 60  TTITFWPSPDVFETV-EFDYETLRTRFQQYAFLNKGLRITLTDLRSGHVDIDPDDTAESV 118

Query: 258 -----PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR-GTVEWAIAWCEE 311
                P  + F +  GL  Y++    ++            E + T R   +E A+ W   
Sbjct: 119 TDAAAPRTDTFLYERGLVDYVEYLNRSKKTDLVNDEIISFESEDTDRKIALEVAMQWTTA 178

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVG 368
               + +Y NTI T EGGTHE G R ALT  I +YA       ++  ++  DD+      
Sbjct: 179 YTESVHTYANTINTHEGGTHEEGFRAALTTLINRYAREKGILKEKDDNLSGDDVREGLTA 238

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           ++SV + EP+F GQTKTKL + +A+  V+    D    +  +NP +A  ++   I+ +  
Sbjct: 239 VISVKLSEPQFEGQTKTKLGNTEAKSFVQKVTGDQLGDWFERNPTQARDIIRKAIQAATA 298

Query: 429 RLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
           R+  RK RE  R+  +     +PGKL DCS      +E+FIVEGDSAGGSA Q RN   Q
Sbjct: 299 RIAARKAREATRRKGLLESGGMPGKLKDCSSKDPSISEIFIVEGDSAGGSAVQGRNPETQ 358

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A+LPLRGKILNV  A  ++   N ++  ++ A G      +  E  RY K+++
Sbjct: 359 AILPLRGKILNVEKARLDRALANNEVQAMITAFGAGIGEDFNTEKARYHKIVL 411


>gi|33145990|emb|CAD57629.2| DNA gyrase subunit B [Vibrio splendidus]
          Length = 405

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 155/413 (37%), Positives = 231/413 (55%), Gaps = 15/413 (3%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKF++++Y++SGGLHGVG+SVVNAL  ++ +T+ R   I +Q +  G P +PL      
Sbjct: 3   GGKFNDNSYKVSGGLHGVGVSVVNALPKQVTLTIHRGGQIHTQTYHHGEPQAPLAVIGDT 62

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            +K GT I F P  + F +   F    L K  +  ++L+  V      ++E        +
Sbjct: 63  -DKTGTEIRFWPGEETFSNVL-FHYDILAKRLRELSFLNSGVSIKLIDERE------EDK 114

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
            + F F GG++ ++     N++ I  +IF    E++     TVE A+ W +     I  +
Sbjct: 115 SDHFMFEGGIQAFVDHLNTNKTPIIQKIFHFDHERED--GITVEVAMQWNDGYQENIYCF 172

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +
Sbjct: 173 TNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPD 232

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ- 435
           P+F+ QTK KLVS + +  VE A+ +    +L++NP EA  +   +I+ +  R   RK  
Sbjct: 233 PKFSSQTKDKLVSSEVKSAVEQAMGEKLSEFLIENPTEAKTVCTKIIDAARARDAARKAR 292

Query: 436 REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
               RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GK
Sbjct: 293 EMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGK 352

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVD 547
           ILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIM DADVD
Sbjct: 353 ILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMADADVD 405


>gi|38492386|gb|AAR22499.1| DNA gyrase subunit B [Citrobacter sp. AHL6]
          Length = 389

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 146/399 (36%), Positives = 223/399 (55%), Gaps = 16/399 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS +L + + R N I  Q +  G+P +PL       +K GT 
Sbjct: 2   SYKVSGGLHGVGVSVVNALSQKLELVIQRDNKIHRQIYEHGVPQAPLAVTGDT-DKTGTM 60

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F P  + F +   F+   L K  +  + L+  V       ++  E       + F++ 
Sbjct: 61  VRFWPSHETFTNVTEFEYEILAKRLRELSSLNSGVSIRLKDKRDGKE-------DHFHYE 113

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG++ +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   
Sbjct: 114 GGIRAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQR 170

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QT
Sbjct: 171 DGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQT 230

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKT 442
           K KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK 
Sbjct: 231 KDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKG 290

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 291 ALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 350

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
             +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 351 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 389


>gi|126035240|gb|ABN72373.1| gyrase B subunit [Enterobacter cloacae]
          Length = 387

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 145/398 (36%), Positives = 220/398 (55%), Gaps = 16/398 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL          GT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYQHGVPEAPLAVTGDTEK-TGTM 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ 
Sbjct: 60  VRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE-------DHFHYE 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   
Sbjct: 113 GGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQR 169

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QT
Sbjct: 170 DGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQT 229

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKT 442
           K KLVS + +  VE  + +    YL +NP +A  ++  +I+ +  R   RK R    RK 
Sbjct: 230 KDKLVSSEVKSAVEQQMNELLSDYLQENPNDAKIVVGKIIDAARAREAARKAREMTRRKG 289

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 ALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 349

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
             +K+ ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 350 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSII 387


>gi|20387146|dbj|BAB91273.1| gyrase B [Streptomyces ehimensis]
 gi|20387180|dbj|BAB91290.1| gyrase B [Streptomyces luteoverticillatus]
          Length = 399

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 136/401 (33%), Positives = 214/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL++ E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGFHWTQDYKLGVPTAPLQQNEPT-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  +    + ++    ++ G P    +
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLTISLTDERPAHVDEEGKPLAVRY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           ++ GG+  +++     +  +          +      ++E ++ W  +    + S+ NTI
Sbjct: 119 HYEGGISDFVRYLNSRKGEVVHPSVIAFEAEDKERMLSLEVSMQWNTQYTEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I +YA   +   ++  ++  DD+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGDDIREGLTAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+  + +    +L +NP EA+ ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKVVHEQLTDWLDRNPNEASDIIRKSIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLETASLPGKLSDCQSNEPAKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  N +I  L+ A G      +    LRY K+I+
Sbjct: 359 EKARIDKILQNTEIQALISAFGTGVHEDFDISKLRYHKIIL 399


>gi|126035294|gb|ABN72400.1| gyrase B subunit [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
          Length = 387

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 144/398 (36%), Positives = 222/398 (55%), Gaps = 16/398 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P +PL       +K GT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTM 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ 
Sbjct: 60  VRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYE 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+K +++   +N++ I   IF   TEK G     +E A+ W +     I  + N I   
Sbjct: 113 GGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GIEVALQWNDGFQENIYCFTNNIPQR 169

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QT
Sbjct: 170 DGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQT 229

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKT 442
           K KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK 
Sbjct: 230 KDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKG 289

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 ALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 349

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
             +K+ ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 350 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSII 387


>gi|20387128|dbj|BAB91264.1| gyrase B [Streptomyces roseoverticillatus]
 gi|308152547|dbj|BAJ22252.1| DNA gyrase subunit B [Streptomyces roseoverticillatus]
          Length = 399

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 139/401 (34%), Positives = 213/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL++ E      G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGFRWTQDYKLGVPTAPLQQNEATGEH-G 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  +    + ++    ++ G P    +
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNRGLTISLTDERPAHVDEEGKPLTVRY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTI 322
           ++ GG+  +++     +  +          +      ++E A+ W  +  E + S+ NTI
Sbjct: 119 HYEGGISDFVRYLNSRKGEVIHPTVIDFDAEDKERMLSLEVAMQWNTQYSEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I +YA   +   ++  ++  DD+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGDDIREGLTAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+  + +    +L +NP EA  ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKVVHEQLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLETASLPGKLSDCQSNEPAKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  NQ+I  L+ A G      +    LRY K+I+
Sbjct: 359 EKARIDKILQNQEIQALISAFGTGVHEDFDIAKLRYHKIIL 399


>gi|308153070|dbj|BAJ22124.1| DNA gyrase subunit B [Bacillus subtilis]
          Length = 385

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 146/394 (37%), Positives = 216/394 (54%), Gaps = 13/394 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            S Y++SGGLHGVG SVVNALS EL VTV R   I  Q + RG+P+S LE   +  +  G
Sbjct: 1   GSGYKVSGGLHGVGASVVNALSTELVVTVHRDGKIHRQTYKRGVPVSDLEIIGET-DHTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F PDP+IF +   +D   L    +  A+L+  V       +E  E+        ++
Sbjct: 60  TTTHFVPDPEIFTETTVYDYDLLANRVRELAFLTKGVNITIEDKREGQERKNE-----YH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K+Y++    ++ ++  E    + EK G    TVE A+ + +     I S+ N I 
Sbjct: 115 YEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNIN 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G +  LTR I  YA      +    ++  DD+      I+S+   +P+F G
Sbjct: 172 TYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNR 440
           QTKTKL + +A+   +       + ++++NP  A K+++  +  +  R+  +K      R
Sbjct: 232 QTKTKLGNSEARTITDTLFSAALETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 292 KSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
            A  +KI +N ++  ++ ALG      +  E  R
Sbjct: 352 KARLDKILSNNEVRSMITALGTGIGEDFNLEKAR 385


>gi|148793376|gb|ABR12752.1| DNA gyrase beta subunit [Photobacterium kishitanii]
          Length = 397

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 148/405 (36%), Positives = 235/405 (58%), Gaps = 14/405 (3%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS+++ +T+ R+  I  Q +  G+P +PL       +K GT
Sbjct: 2   NSYKVSGGLHGVGVSVVNALSEKVELTINRKGHIHQQSYHHGVPDAPLAVIGDT-DKTGT 60

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           R+ F P  + F +   F    L K  +  ++L+  V      ++E        +++ F +
Sbjct: 61  RLRFWPSEETFTNNLEFQYEILAKRLRELSFLNSGVSIRLIDERE------EGKQDHFMY 114

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG++ +++    N++ I  ++F   +E++     TVE A+ W +     +  + N I  
Sbjct: 115 EGGIRAFVEHLNRNKTPIHQKVFHFDSERED--GITVEVAMQWNDGFQEGVYCFTNNIPQ 172

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTR +  + +      K   +   DD     + ++SV + +P+F+ Q
Sbjct: 173 RDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLIAVVSVKVPDPKFSSQ 232

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRK 441
           TK KLVS + +  VE+A+ + F  +L+++P +A  +   +I+ S  R   RK R    RK
Sbjct: 233 TKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKAREMTRRK 292

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  
Sbjct: 293 GALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 352

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDAD
Sbjct: 353 ARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDAD 397


>gi|82568125|dbj|BAE48497.1| DNA gyrase B [Mechercharimyces asporophorigenens]
          Length = 389

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 142/400 (35%), Positives = 222/400 (55%), Gaps = 15/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y  SGGLHGVG+SVVNALS+ L V V R   I  Q++ RG+P + L+   +  ++ G
Sbjct: 1   GEGYTFSGGLHGVGVSVVNALSEWLEVKVRRDGKIHFQRYERGVPQADLKVIGET-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I F+PDP +F +   +D   L    +  ++L+  +    + ++         + + + 
Sbjct: 60  TEIHFKPDPDVFTETTEYDYNTLQTRLRELSFLNSGLAITITDER-------GDKSDHYK 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           F GG+++Y++    NR ++       +  K G     VE A+ + +       SY N I 
Sbjct: 113 FDGGIRSYVEHLNRNREVMHKTPVYIQGTKDG---LNVEIAMQYNDSFSSHIYSYANNIH 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G + ALTR I  YA      +    ++  DD+      I+SV I +P+F G
Sbjct: 170 THEGGTHEAGFKSALTRVINDYARRNNLLKGQDSNLTGDDVREGLTAIISVKIADPQFEG 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + +A+   E+   + F  +L ++P EA K+++  +  +  R   R+ RE   R
Sbjct: 230 QTKTKLGNSEARTVTESLFSEHFHIFLEEHPQEAKKVIQKALTAARAREAARRARELTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC+   A  +EL++VEGDSAGG+AKQ R+R  QA+LPLRGKI+NV 
Sbjct: 290 KNALEVSSLPGKLADCTSRNASSSELYLVEGDSAGGTAKQGRDRMFQAILPLRGKIINVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            +  +K  +N+++  ++ ALG      ++ +  RY K+II
Sbjct: 350 KSRLDKALSNEEVRTIITALGTGVGEDFQIDKARYHKIII 389


>gi|323388480|gb|ADX60529.1| topoisomerase IV subunit B [Geobacillus sp. NTU 03]
          Length = 396

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 137/408 (33%), Positives = 209/408 (51%), Gaps = 20/408 (4%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           F    Y+ SGGLHGVG SVVNALS+ L VT+ R   I+ Q+F  G       ++    NK
Sbjct: 1   FGQGGYKTSGGLHGVGASVVNALSEWLVVTIHRDGFIYRQRFEHGGKPVTTLEEIGTTNK 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT I F+PDP IF     FD   L    +  A+L   +K     ++          +E 
Sbjct: 61  TGTIIQFKPDPTIFSTTV-FDYETLSVRLRESAFLLKGLKIELVDER-------TGMREV 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNT 321
           F++  G++ ++    E + ++   +     E+ G     VE+A  + +   E   S+ N 
Sbjct: 113 FHYENGIEAFVAYLNEEKDVLHPVV-YFAGEQNGI---EVEFAFQFHDGYSENVLSFVNN 168

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP-- 377
           + T +GGTHE+G + A+TR   +YA       ++  ++   D+      ++SV I E   
Sbjct: 169 VRTKDGGTHEAGAKTAMTRVFNEYARRVGLLKEKDKNLEGTDIREGLSAVVSVRIPEHLL 228

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F GQTK KL + +A+  V+  + +   ++L +NP  +  L++  I   + R   RK RE
Sbjct: 229 QFEGQTKGKLGTSEARSAVDAVVSEQLMYFLQENPDASAMLIKKAIRAYQAREAARKARE 288

Query: 438 VNRKTAIRKLR---LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
             R    RK +   L GKL           EL++VEGDSAGGSAKQ R+R  QAVLPLRG
Sbjct: 289 EARSGKKRKGKEALLSGKLTPAQGRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRG 348

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           K++N   A    I  N++I  ++ A+G    + +  +D+ Y+KVIIMT
Sbjct: 349 KVINTEKAKLGDILKNEEINTIIHAIGGGVGADFSLDDVNYDKVIIMT 396


>gi|33590316|gb|AAQ22698.1| DNA gyrase subunit B [Photorhabdus asymbiotica subsp. australis]
          Length = 387

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 147/398 (36%), Positives = 221/398 (55%), Gaps = 16/398 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS++L + + R   +  Q +  G+P SPL+   +   + GTR+ F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKIVGET-EQTGTRVRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P    F +   F    L K  +  ++L+  V       +   E       + F++ GG+
Sbjct: 60  WPSMDTFRNNTEFQHDILAKRLRELSFLNSGVSIRLIDKRTNTE-------DHFHYEGGI 112

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K +++   +N++ I   +F   TEK G     VE ++ W +     I  + N I   +GG
Sbjct: 113 KAFVEFLNKNKTPIHPNVFYFSTEKDGI---GVEISMQWNDGFQENIYCFTNNIPQRDGG 169

Query: 329 THESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH  G R A+TR +  Y +      K  +S   DD     V ++SV + +P+F+ QTK K
Sbjct: 170 THLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDK 229

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIR 445
           LVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+ 
Sbjct: 230 LVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVGKIIDAARAREAARKAREMTRRKGALD 289

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +
Sbjct: 290 LAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 349

Query: 506 KIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
           K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 350 KMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMT 387


>gi|126035310|gb|ABN72408.1| gyrase B subunit [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|126035316|gb|ABN72411.1| gyrase B subunit [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 385

 Score =  223 bits (568), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 144/396 (36%), Positives = 220/396 (55%), Gaps = 16/396 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P +PL       +K GT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ G
Sbjct: 60  RFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   +
Sbjct: 113 GIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRD 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK
Sbjct: 170 GGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTK 229

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTA 443
            KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A
Sbjct: 230 DKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGA 289

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A 
Sbjct: 290 LDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 349

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
            +K+ ++Q++  L+ ALGC   R +Y  + LRY  +
Sbjct: 350 FDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSI 385


>gi|41387064|gb|AAS01487.1| GyrB [Bacillus sp. H-18]
          Length = 390

 Score =  223 bits (568), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 145/400 (36%), Positives = 219/400 (54%), Gaps = 14/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS EL V V R+  I  QK+ RGIP++ L+      ++ G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F+PDP+IF +   +D   L    +  A+L+  +K      +E  +K      +EF+
Sbjct: 60  TITRFKPDPEIFQETTVYDFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFH 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+K+Y++    ++  I  E    +  K G     VE ++ + E       S+ N I 
Sbjct: 114 YEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIH 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G + ALTR I  Y       +    ++  +D+      I+S+    P+F G
Sbjct: 171 TYEGGTHEVGFKTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNR 440
           QTKTKL + +A+   E+   + F+ +L++NP  A K++E   +        ++ +    R
Sbjct: 231 QTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS      +E++IVEG SAGGSAKQ R+R  QA+LPL+GKI+NV 
Sbjct: 291 KSALEVSSLPGKLADCSSKDPAISEIYIVEGGSAGGSAKQGRDRHFQAILPLKGKIINVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +KI +N ++  ++ A+G      +  E  RY KVII
Sbjct: 351 KARLDKILSNDEVRTIITAIGTNIGGDFDIEKARYHKVII 390


>gi|33590350|gb|AAQ22715.1| DNA gyrase subunit B [Photorhabdus temperata subsp. khanii]
          Length = 397

 Score =  223 bits (568), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 139/394 (35%), Positives = 214/394 (54%), Gaps = 15/394 (3%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD+++Y++SGGLHGVG+SVVNALS++L + + R   +  Q +  G+P SPL+   +   +
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGET-EQ 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GTR+ F P    F +   F    L K  +  ++L+  V       +   E       + 
Sbjct: 60  TGTRVRFWPSMDTFSNNTEFQHDILAKRLRELSFLNSGVSIRLLDKRTNIE-------DH 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           F++ GG+K +++   +N++ I   +F   TEK       VE A+ W +     I  + N 
Sbjct: 113 FHYKGGIKAFVEFLNKNKTPIHPNVFYFSTEKDSI---GVEVALQWNDGFQENIYCFTNN 169

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH  G R A+TR +  Y +      K  +S   DD     V ++SV + +P+F
Sbjct: 170 IPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKF 229

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREV 438
           + QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+        R+ +   
Sbjct: 230 SSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVGKIIDAARAREAARKAREMT 289

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILN
Sbjct: 290 RRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILN 349

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           V  A  +K+ ++Q++  L+ ALGC         D
Sbjct: 350 VEKARFDKMLSSQEVATLITALGCGIGRDEYNPD 383


>gi|308153076|dbj|BAJ22127.1| DNA gyrase subunit B [Micrococcus luteus]
          Length = 430

 Score =  223 bits (568), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 143/431 (33%), Positives = 206/431 (47%), Gaps = 36/431 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVGISVVNALS  +   V RQ  ++   F+ G        K +  +  G
Sbjct: 1   GGGYAVSGGLHGVGISVVNALSRRVDTEVRRQGHVWRMSFADGGVPQGELVKGEATDATG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T  TF PDP+IF     FD   L    Q  A+L+  ++   + ++               
Sbjct: 61  TVQTFYPDPEIFDSI-EFDYETLRARFQQMAFLNRGLRITLTDERVQESNEVVDDEIAGE 119

Query: 250 -------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG 296
                        E AE+        + +  GL  Y+Q     + +          E + 
Sbjct: 120 GAAGEDVAENGLAEDAEQEPQRRSVTYLYENGLLDYVQHLNSAKKVEYVHDDVIAFEAED 179

Query: 297 THRG---TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350
              G    VE A+ W       + +Y NTI T EGGTHE G R ALT  + +YA   +  
Sbjct: 180 VSDGRSMAVEVAMQWTSAYSESVHTYANTINTHEGGTHEEGFRAALTSLVNRYAREKEVL 239

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
             +  ++  +D+      ++SV + EP+F GQTKTKL + +A+  V  A+ D    +  +
Sbjct: 240 KPKEDNLTGEDIREGLTAVISVKLSEPQFEGQTKTKLGNSEARGFVSKAVTDHLGDWFER 299

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIV 469
           NP  A +++   I  S  RL  RK R+  R+ + +    +PGKLADCS       E++IV
Sbjct: 300 NPGPAKEIIRKAIMASHARLAARKARDNARRKSPLESFGMPGKLADCSSKDPERCEVYIV 359

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           EGDSAGGSAKQ RN   QA+LPLRGKILNV  A  +K   N +I  ++ A G     ++ 
Sbjct: 360 EGDSAGGSAKQGRNPETQAILPLRGKILNVERARLDKALGNAEIQSMITAFGTNIGEEFD 419

Query: 530 EEDLRYEKVII 540
              LRY K+++
Sbjct: 420 ISKLRYHKIVL 430


>gi|86169579|gb|ABC87029.1| DNA gyrase subunit B [Weissella hellenica]
          Length = 394

 Score =  223 bits (568), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 145/402 (36%), Positives = 214/402 (53%), Gaps = 14/402 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK--EKVRNK 202
              Y++SGGLHGVG SVVNALS  L V V R    ++  F RG   + + +   E     
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTSLDVLVVRDGKGYAMDFERGHVKTSMHEVSAEDAPVS 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
           RGT + F PDP IF +   FD   L+   +  A+L+  ++   +  +        P  E 
Sbjct: 61  RGTIVRFAPDPDIFRETTVFDYKTLMNRVRELAFLNKGLRISITDMR-----LNEPIVES 115

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNT 321
           F++ GG+K Y+     N+ +I +E    +  +       VE ++ + ++      S+ N 
Sbjct: 116 FHYEGGIKEYVNFLNVNKDVIFNEPIYVEGMENDI---AVEVSLQYTDDFHSNLLSFTNN 172

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEF 379
           I T EGGTHE+G + ALTR I  YA   +  +        DD+      I+SV   +P+F
Sbjct: 173 IHTYEGGTHETGFKSALTRVINDYARRIKILKENDDTLSGDDVREGLTAIVSVKHPDPQF 232

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-V 438
            GQTKTKL + DA+  V+    D F  ++++NP  A +++E  I   + R+  ++ RE  
Sbjct: 233 EGQTKTKLGNSDARTAVDRMFSDTFARFMMENPKIAKQVVEKGILAGKARMAAKRAREAT 292

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            +K+ +    LPGKLAD +      +ELFIVEGDSAGGSAKQ R R  QA+LP+RGKILN
Sbjct: 293 RKKSGLEIANLPGKLADNTSKDPKISELFIVEGDSAGGSAKQGRERLTQAILPIRGKILN 352

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           V  A  EKI  N++I  L  A+G    +++     +Y K+II
Sbjct: 353 VEKASMEKILANEEIRSLFTAMGTGFGNEFDVTKAKYHKLII 394


>gi|19912095|dbj|BAB88359.1| DNA gyrase subunit B [Cytophaga sp. T-551]
          Length = 391

 Score =  223 bits (568), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 143/395 (36%), Positives = 213/395 (53%), Gaps = 9/395 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+S VNALSD L  TV R+  I+ Q++ RG  L P++   +  +  GT +TF
Sbjct: 1   VSGGLHGVGVSCVNALSDHLKATVHREGKIWEQEYERGKTLYPVKTVGET-DITGTEVTF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD  IF     ++   L    +  AYL+  +    +  +   ++      E F+   GL
Sbjct: 60  LPDKSIFQQTTEYNYETLATRMRELAYLNKGITITLTDKRNKDDEG-NFIAETFHSNEGL 118

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
             +++     R+ +   + + + EK G     VE A+ + +     + SY N I T EGG
Sbjct: 119 SEFVKYLDSTRTPVIQHVISMEGEKNGIP---VEVAMIYNDSYAENLHSYVNNINTHEGG 175

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH SG R  LT  +KKYA+ +   + +      DD       I+SV + EP+F GQTKTK
Sbjct: 176 THLSGFRRGLTGTLKKYADTSGLLKNVKFEISGDDFREGLTAIVSVKVAEPQFEGQTKTK 235

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIR 445
           L + +    V  A+ +    YL +NP +A  +++ VI  ++ R   RK RE+  RKT + 
Sbjct: 236 LGNREVTSAVSQAVAEMLTDYLEENPNDAKTIVQKVILAAQARHAARKAREMVQRKTVMS 295

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV  A   
Sbjct: 296 IGGLPGKLSDCSETDPAVCEIFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQH 355

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           K+  N++I ++  ALG    ++     L   K+  
Sbjct: 356 KVFENEEIKNMFTALGITIGTEEDPRALNLSKLRY 390


>gi|159146560|gb|ABW90724.1| DNA gyrase beta subunit [Vibrio vulnificus]
          Length = 398

 Score =  223 bits (568), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 147/408 (36%), Positives = 227/408 (55%), Gaps = 15/408 (3%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R     SQ +  G+P +PL      
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEKVLLTIHRGGHTHSQTYRHGVPDAPLAIIGDT 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
               GT + F P  + F +   F    L K  +  ++L+  V      ++E  +K     
Sbjct: 61  EK-TGTTVRFWPSAQTFSN-IEFHYDILAKRLRELSFLNSGVSIKLFDEREEDKK----- 113

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
            + F + GG++ ++     N++ I  ++F   +E++      VE A+ W +     I  +
Sbjct: 114 -DHFMYEGGIQAFVTHLNRNKTPIHEKVFHFNSERED--GIAVEVAMQWNDGFQENIYCF 170

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +G R ALTR +  Y +      K   +   DD       ++SV + +
Sbjct: 171 TNNIPQRDGGTHLAGFRAALTRTLNSYMDKEGYSKKAKTATSGDDAREGLTAVVSVKVPD 230

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQ 435
           P+F+ QTK KLVS + +  VE+ + D  + +L ++P EA  +   +I+        R+ +
Sbjct: 231 PKFSSQTKDKLVSSEVKSAVESFMADKLNDFLAEHPSEAKTVCSKIIDAARAREAARKAR 290

Query: 436 REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
               RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GK
Sbjct: 291 EMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGK 350

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
           ILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 351 ILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 398


>gi|3985990|dbj|BAA34871.1| topoisomerase IV subunit E [Nitrosospira sp. NpAV]
          Length = 395

 Score =  223 bits (568), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 226/397 (56%), Positives = 294/397 (74%), Gaps = 3/397 (0%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y  SGGLHGVG+SVVNALS+ L V VAR   ++   FSRGIP + LEK   + N+RG
Sbjct: 1   SKAYNTSGGLHGVGVSVVNALSETLEVQVARDQQLYRMVFSRGIPQTKLEKLGSIMNRRG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+  F+PD KIFG  A F  ARL+KM +SKAYL G V+  W C  E+  K   P +  F+
Sbjct: 61  TKTRFKPDEKIFGKGAAFKPARLMKMARSKAYLFGGVEIRWKCAPELI-KDDTPAEAVFH 119

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTIL 323
           FPGGL  YL   ++ R+ ++ +IF+G+ EK+G H G+VEWA+AW  +++   +SYCNTI 
Sbjct: 120 FPGGLADYLTASIDGRTRVTKDIFSGRVEKEGGH-GSVEWAVAWISDDDGFSSSYCNTIP 178

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           T EGGTHE+GLR AL + ++ Y ELT NK+A  I S+D+M +A  +LSVF+REPEF GQT
Sbjct: 179 TAEGGTHENGLRQALYKALRAYGELTGNKKAQQITSEDVMGTAASMLSVFVREPEFQGQT 238

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443
           K KL + +A + VE A+RD FDH+L  +P +ATKLLEW +++SEERL+RR+++E+ R++A
Sbjct: 239 KDKLATAEATKIVETAVRDAFDHWLADSPQQATKLLEWTVDQSEERLKRRREKEIGRQSA 298

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
            RKLRLPGKLADCS   A GTE+FIVEGDSAGGSAK AR+R  QAVLPLRGKILNVA+A 
Sbjct: 299 TRKLRLPGKLADCSIQQAAGTEIFIVEGDSAGGSAKSARDRETQAVLPLRGKILNVANAS 358

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           S K+  NQ + DL+QALG  T ++YR+EDLRYE+VII
Sbjct: 359 SAKLSQNQLLADLIQALGAGTSTKYRDEDLRYERVII 395


>gi|20387118|dbj|BAB91259.1| gyrase B [Streptomyces ardus]
          Length = 399

 Score =  223 bits (568), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 138/401 (34%), Positives = 215/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL+K E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGYRWTQDYKLGVPTAPLQKNEAT-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  ++   +  + +  ++ G P   ++
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLRISLTDLRADHVDEEGKPLSVDY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTI 322
           ++ GG+  +++     +  +          +      +VE A+ W  +  E + S+ NTI
Sbjct: 119 HYEGGIVDFVKYLNARKGELIHPTVIDIEAEDKERMLSVEIAMQWNSQYSEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I +YA   +   ++  ++  +D+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTGLINRYARERKLLREKDDNLTGEDIREGLTAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+    +    +L +NP EA  ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKVAHEHLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  N ++  L+ A G      +    LRY K+I+
Sbjct: 359 EKARIDKILQNTEVQALISAFGTGVHEDFDIAKLRYHKIIL 399


>gi|159146576|gb|ABW90732.1| DNA gyrase beta subunit [Vibrio vulnificus]
 gi|159146594|gb|ABW90741.1| DNA gyrase beta subunit [Vibrio vulnificus]
          Length = 398

 Score =  223 bits (568), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 147/408 (36%), Positives = 227/408 (55%), Gaps = 15/408 (3%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R     SQ +  G+P +PL      
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEKVLLTIHRGGHTHSQTYRHGVPDAPLAIIGDT 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
               GT + F P  + F +   F    L K  +  ++L+  V      ++E  +K     
Sbjct: 61  EK-TGTTVRFWPSAQTFTN-IEFHYDILAKRLRELSFLNSGVSIKLFDEREEDKK----- 113

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
            + F + GG++ ++     N++ I  ++F   +E++      VE A+ W +     I  +
Sbjct: 114 -DHFMYEGGIQAFVTHLNRNKTPIHEKVFHFNSERED--GIAVEVAMQWNDGFQENIYCF 170

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +G R ALTR +  Y +      K   +   DD       ++SV + +
Sbjct: 171 TNNIPQRDGGTHLAGFRAALTRTLNSYMDKEGYSKKAKTATSGDDAREGLTAVVSVKVPD 230

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQ 435
           P+F+ QTK KLVS + +  VE+ + D  + +L ++P EA  +   +I+        R+ +
Sbjct: 231 PKFSSQTKDKLVSSEVKSAVESFMADKLNDFLAEHPSEAKTVCSKIIDAARAREAARKAR 290

Query: 436 REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
               RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GK
Sbjct: 291 EMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGK 350

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
           ILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 351 ILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 398


>gi|6729239|dbj|BAA89741.1| DNA gyrase subunit B [Mycobacterium malmoense]
          Length = 421

 Score =  223 bits (568), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 140/427 (32%), Positives = 216/427 (50%), Gaps = 35/427 (8%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
            +NS Y +SGGLHGVG+SVVNALS  L V VAR   ++SQ +    P +   K+ +    
Sbjct: 1   GENSGYNVSGGLHGVGVSVVNALSTRLEVDVARDGYMWSQFYDHAEPGTL--KQGEATKT 58

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-------- 254
            GT I F  DP IF     +D   + +  Q  A+L+  +    + ++   E+        
Sbjct: 59  TGTTIRFWADPDIFETT-EYDFETVARRLQEMAFLNKGLTINLTDERVSEEEVVDDVVSD 117

Query: 255 -----------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                                +   F++PGGL  +++     ++ I + I     +  G 
Sbjct: 118 TAEAPKSAVEKAAESTGPHKVKHRTFHYPGGLVDFVKHINRTKNPIHNSIVDFSGKGPGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +    + 
Sbjct: 178 ---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
            ++  DD+      ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP +
Sbjct: 235 PNLTGDDIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPAD 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDS
Sbjct: 295 AKTVVNKAVSSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    L
Sbjct: 355 AGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDITKL 414

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 415 RYHKIVL 421


>gi|33590332|gb|AAQ22706.1| DNA gyrase subunit B [Photorhabdus temperata subsp. khanii]
 gi|33590340|gb|AAQ22710.1| DNA gyrase subunit B [Photorhabdus temperata]
          Length = 386

 Score =  223 bits (568), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 145/397 (36%), Positives = 221/397 (55%), Gaps = 16/397 (4%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS++L + + R   +  Q +  G+P SPL+   +   + 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGET-EQT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GTR+ F P    F +   F    L K  +  ++L+  V       +   E       + F
Sbjct: 60  GTRVRFWPSMDTFSNNTEFQHDILAKRLRELSFLNSGVSIRLLDKRTNIE-------DHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           ++ GG+K +++   +N++ I   +F   TEK       VE A+ W +     I  + N I
Sbjct: 113 HYKGGIKAFVEFLNKNKTPIHPNVFYFSTEKDSI---GVEVALQWNDGFQENIYCFTNNI 169

Query: 323 LTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH  G R A+TR +  Y +      K  +S   DD     V ++SV + +P+F+
Sbjct: 170 PQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFS 229

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    
Sbjct: 230 SQTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVGKIIDAARAREAARKAREMTR 289

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 290 RKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 349

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRY 535
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY
Sbjct: 350 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRY 386


>gi|108946648|gb|ABG23672.1| gyrase subunit B [Leptospira kirschneri]
 gi|108946652|gb|ABG23674.1| gyrase subunit B [Leptospira kirschneri]
 gi|108946654|gb|ABG23675.1| gyrase subunit B [Leptospira kirschneri]
          Length = 138

 Score =  223 bits (568), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 75/139 (53%), Positives = 104/139 (74%), Gaps = 1/139 (0%)

Query: 51  ILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVV 110
           ILEGLE VR RPGMYIG  DE  LH +  EV+DN++DE +AG+   I++++  N  + V 
Sbjct: 1   ILEGLEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEIKINILPNNIVEVK 60

Query: 111 DNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELH 170
           DNGRGIPV+ HP     ST+E+++T LHAGGKF+N  Y++SGGLHGVG+SVVNALS+ L 
Sbjct: 61  DNGRGIPVDIHP-DKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYLE 119

Query: 171 VTVARQNTIFSQKFSRGIP 189
           V V ++  +++QK+ +G+P
Sbjct: 120 VEVHQKGKVYTQKYEKGVP 138


>gi|68445354|dbj|BAE03178.1| DNA gyrase subunit B [actinobacterium Aac-50]
          Length = 399

 Score =  223 bits (568), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 130/401 (32%), Positives = 215/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG SVVNALS+ L V V     +++Q++ RG+P +PL+K  +  ++ G
Sbjct: 1   GGGYAVSGGLHGVGSSVVNALSNRLTVAVKTDGHLWTQEYLRGVPTAPLKK-GEAVDETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D +IF     ++   L +  Q  A+L+  V      ++ E  ++ G      +
Sbjct: 60  TTVTFWADDEIFETTT-YNFETLSRRFQEMAFLNRGVSIELIDERPEYKDEEGNARSVHY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG+  +++     +  +          +    + + E A+ W  +    + ++ N I
Sbjct: 119 KYDGGISDFVKHLNAAKGEMVHPQVIEFGAEDKERKISAEVALQWNNQYSESVYTFANVI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
            T +GGTHE G R ALT  + +YA+  Q   ++  ++  +D+    V I+SV + EP+F 
Sbjct: 179 QTPDGGTHEEGFRSALTNVVNRYAKEKQLLKEKDDNLSGEDIREGLVAIVSVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTK KL + +A+  V+    +    +  +NP EA  ++   I+ +  R+  RK RE+ R
Sbjct: 239 GQTKAKLGNTEARTFVQKITYESMADWFDRNPNEAKDIIRKSIQAATARIAARKARELTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +   + LPGKL+DC        E+F+VEGDSAG SAKQ R+   QA++P+RGKILNV
Sbjct: 299 RKGLLESMALPGKLSDCQSTNPVECEIFVVEGDSAGVSAKQGRDPRVQAIMPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +K+  N ++  L+ ALG      +    LRY K+++
Sbjct: 359 EKARIDKVLQNTEVQGLISALGTGIHDDFDVSKLRYHKIVL 399


>gi|20387232|dbj|BAB91316.1| gyrase B [Streptomyces viridiflavus]
          Length = 399

 Score =  223 bits (568), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 140/401 (34%), Positives = 216/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL+K E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGYRWTQDYKLGVPTAPLQKNEAT-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  ++   +  + +  ++ G P   E+
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLRISLTDLRADHVDEEGKPLSVEY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTI 322
           ++ GG+  ++      +  +          +      +VE A+ W  +  E + S+ NTI
Sbjct: 119 HYEGGIVDFVTYLNSRKGELIHPTVIDVEAEDKERMLSVEIAMQWNSQYSEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I +YA   +   ++  ++  +D+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGEDIREGLTAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+  + +    +L +NP EA  ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKVVHEHLTDWLDRNPNEAADIIRKGIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLETASLPGKLSDCQSNEPAKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  N ++  L+ A G      +  E LRY K+I+
Sbjct: 359 EKARVDKILQNTEVQALISAFGTGVHEDFDIEKLRYHKIIL 399


>gi|18147171|dbj|BAB83066.1| DNA gyrase subunit B [Alcanivorax sp. Haw-2]
          Length = 395

 Score =  223 bits (567), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 152/407 (37%), Positives = 222/407 (54%), Gaps = 18/407 (4%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD++TY++SGGLHGVG+SVVNALS+EL +T+ R   +  Q +  G+P  PLE       
Sbjct: 1   KFDDNTYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYRHGVPDKPLEVVG-TTE 59

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             GT + FRP  + F +   F    L K  +  ++L+  V+     ++   E       E
Sbjct: 60  TSGTSVHFRPSAETFSNI-KFHYDILAKRLRELSFLNSGVRIHLKDERSGEE-------E 111

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
            F + GGL  ++     N++ ++       + E+ G     VE A+ W +     I  + 
Sbjct: 112 IFEYEGGLSAFVSYLNVNKTPLNQVFHFQYEREEDGI---AVEVAMQWNDSYQENIFCFT 168

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH +G R ALTR +  Y +      K   +   DD       ++SV + +P
Sbjct: 169 NNIPQRDGGTHLAGFRGALTRTLNNYMDKEGLLKKEKANPSGDDAREGLTAVISVKVPDP 228

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-R 436
           +F+ QTK KLVS + +  VE  + + F  YL++NP EA  + + +I+ +  R   RK   
Sbjct: 229 KFSSQTKDKLVSSEVKGAVEQTMGELFQDYLLENPGEAKAITQKIIDAARARDAARKARE 288

Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              RK A+    LPGKLADC Q     +EL+IVEGDSAGGSAKQ R+R NQA+LPL+GKI
Sbjct: 289 MTRRKGALDIAGLPGKLADCQQKDPAQSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKI 348

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMT 542
           LNV  A  +K+ ++Q++  L+ ALGC         E LRY ++IIMT
Sbjct: 349 LNVEKARFDKMLSSQEVGTLITALGCGIGRDEYNVEKLRYHRIIIMT 395


>gi|199599921|gb|ACH91038.1| DNA gyrase subunit B [Paenibacillus durus]
          Length = 404

 Score =  223 bits (567), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 164/415 (39%), Positives = 235/415 (56%), Gaps = 15/415 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKF    Y++SGGLHGVGISVVNALS+++ VTV R+   + Q++ RG+P   +    
Sbjct: 1   HAGGKFGGGGYKVSGGLHGVGISVVNALSEKVIVTVKREGHAYQQEYRRGVPQYDIRTIG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
              ++  T+ TF PDP+IF +   +D   LL   +  A+L+  ++   + ++        
Sbjct: 61  DT-DETSTKTTFLPDPEIFTETTVYDYNTLLTRIRELAFLNKGIEISLTDER-------T 112

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
                F + GG+  Y++   E + ++  E       +       +E A+ + +     I 
Sbjct: 113 GASSTFKYDGGIIEYVKFLNEKKEVLHEEPIYVGGSRDMIQ---IEVALQYNDSYTENIY 169

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
           S+ N I T EGGTHESG + ALTR I  YA  +      + ++  DD+      I+SV I
Sbjct: 170 SFANNIHTHEGGTHESGFKSALTRIINDYARKSGIIKDNSSNLTGDDVREGLTAIISVKI 229

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP+F GQTKTKL + + +  VE+   +    +L +NP  + ++LE  ++ S  R   RK
Sbjct: 230 PEPQFEGQTKTKLGNSEVRGIVESLFGEKLQEFLEENPAISRRVLEKSLQASRAREAARK 289

Query: 435 QRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            RE   RK+A+    LPGKLADCS   A  +ELFIVEGDSAGGSAKQ R+R  QA+LPLR
Sbjct: 290 ARELTRRKSALEVSSLPGKLADCSSKDASISELFIVEGDSAGGSAKQGRDRHFQAILPLR 349

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           GKILNV  A  ++I +N +I  ++ ALG      +     RY KV+IMTDADVDG
Sbjct: 350 GKILNVEKARLDRILSNAEIRAIITALGTGIGDDFDLSKARYHKVVIMTDADVDG 404


>gi|108946666|gb|ABG23681.1| gyrase subunit B [Leptospira santarosai]
 gi|108946668|gb|ABG23682.1| gyrase subunit B [Leptospira santarosai]
 gi|108946670|gb|ABG23683.1| gyrase subunit B [Leptospira santarosai]
 gi|108946672|gb|ABG23684.1| gyrase subunit B [Leptospira santarosai]
          Length = 137

 Score =  223 bits (567), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 76/138 (55%), Positives = 103/138 (74%), Gaps = 1/138 (0%)

Query: 52  LEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVD 111
           LEGLE VR RPGMYIG  DE  LH +  EV+DN++DE +AG+   I++S+  +  + V D
Sbjct: 1   LEGLEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEIKISILPDNIIEVKD 60

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171
           NGRGIPV+ HP     ST+E+++T LHAGGKF+N  Y++SGGLHGVG+SVVNALS+ L V
Sbjct: 61  NGRGIPVDIHP-DKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYLEV 119

Query: 172 TVARQNTIFSQKFSRGIP 189
            V ++  I++QK+ +GIP
Sbjct: 120 EVHQKGKIYTQKYEKGIP 137


>gi|29652843|gb|AAO87391.1| DNA gyrase B [Listeria monocytogenes]
          Length = 183

 Score =  223 bits (567), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 86/185 (46%), Positives = 115/185 (62%), Gaps = 2/185 (1%)

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A 
Sbjct: 1   LEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKAR 60

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ M
Sbjct: 61  LDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYM 120

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
             L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+KGLGEM
Sbjct: 121 RPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYKGLGEM 178

Query: 624 LASQL 628
              QL
Sbjct: 179 NPEQL 183


>gi|41387053|gb|AAS01483.1| GyrB [Bacillus sp. H-10]
          Length = 390

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 145/400 (36%), Positives = 218/400 (54%), Gaps = 14/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG  VVNALS EL V V R+  I  QK+ RGIP++ L+      ++ G
Sbjct: 1   GGGYKVSGGLHGVGAPVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F+PDP+IF +   +D   L    +  A+L+  +K      +E  +K      +EF+
Sbjct: 60  TITRFKPDPEIFQETTVYDFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFH 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+K+Y++    ++  I  E    +  K G     VE ++ + E       S+ N I 
Sbjct: 114 YEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIH 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G + ALTR I  Y       +    ++  +D+      I+S+    P+F G
Sbjct: 171 TYEGGTHEVGFKTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNR 440
           QTKTKL + +A+   E+   + F+ +L++NP  A K++E   +        ++ +    R
Sbjct: 231 QTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV 
Sbjct: 291 KSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +KI  N ++  ++ A+G      +  E  RY KVII
Sbjct: 351 KARLDKILPNDEVRTIITAIGTNIGGDFDIEKARYHKVII 390


>gi|60459494|gb|AAX20083.1| DNA gyrase subunit B [Leptospira genomosp. 1 serovar Pingchang]
          Length = 141

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 77/142 (54%), Positives = 105/142 (73%), Gaps = 1/142 (0%)

Query: 51  ILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVV 110
           ILEGLE VR RPGMYIG  D+  LH +  EV+DN++DE +AG+   I +S+  +  + V 
Sbjct: 1   ILEGLEAVRKRPGMYIGTQDDTGLHKMVYEVVDNSVDEAMAGHCTEIGISILPDNIIEVK 60

Query: 111 DNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELH 170
           DNGRGIPV+ HP     ST+E+++T LHAGGKF+N  Y++SGGLHGVG+SVVNALS+ L 
Sbjct: 61  DNGRGIPVDIHP-DKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYLI 119

Query: 171 VTVARQNTIFSQKFSRGIPLSP 192
           V V ++   ++QK+ +GIP+SP
Sbjct: 120 VEVHQKGKFYTQKYEKGIPVSP 141


>gi|38224414|gb|AAR14136.1| DNA gyrase B subunit [Fusobacterium necrophorum subsp. necrophorum]
          Length = 403

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 145/412 (35%), Positives = 219/412 (53%), Gaps = 16/412 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRN 201
           +N  Y++SGGLHGVGISVVNALS+   V V R+  ++ QK+ RG P+  ++     +V  
Sbjct: 1   ENDNYKVSGGLHGVGISVVNALSEWTEVKVKREGNVYYQKYLRGKPVEDVKIISTLEVGE 60

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             GT +TF+PD +IF     F+   L    +  AYL+  ++      +       I +KE
Sbjct: 61  TTGTIVTFKPDIEIFETVI-FEYEVLQHRLKELAYLNRGLEINLLDCR-----NEIGKKE 114

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCN 320
            F F GG+  +L+        + S+    + + +   +  V+ A  +   ++  I S+ N
Sbjct: 115 SFQFEGGISDFLKEVTRENQTLLSKQIHIEGQAE---QVGVDIAFTYTTGQSEVIYSFVN 171

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I T EGG+H +G R  LT+ I    +      ++   +   D+    V I+SV + +P+
Sbjct: 172 NINTPEGGSHVTGFRTCLTKVINDIGKSQGFLKEKDGKLQGGDIREGIVAIISVKVPQPQ 231

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
           F GQTKTKL + +    V   L      +L  NP +   ++E ++   + R   ++ RE 
Sbjct: 232 FEGQTKTKLGNSEVNGIVNTVLSTDLKIFLEDNPNDTKLIIEKILSSKKAREAAQRAREA 291

Query: 439 NRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
             + + +    LPGKLADCS       E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKIL
Sbjct: 292 VLRKSVLEVGSLPGKLADCSSKKPEECEIFLVEGDSAGGSAKQGRDRYFQAILPLKGKIL 351

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDG 548
           NV  AG  K   + +I  +V A G     +  + E LRY K+I+MTDADVDG
Sbjct: 352 NVEKAGLHKALESDEIRAMVTAFGTNIGEESFDLEKLRYGKIILMTDADVDG 403


>gi|33469255|gb|AAQ19676.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. kayaii]
          Length = 384

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 141/393 (35%), Positives = 216/393 (54%), Gaps = 15/393 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS++L + + R   +  Q +  G+P SPL+   +   + 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGET-EQT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GTR+ F P    F +   F    L K  +  ++L+  V       +   E       + F
Sbjct: 60  GTRVRFWPSMDTFRNNTEFQHDILAKRLRELSFLNSGVSIRLIDKRTNIE-------DHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           ++ GG+K +++   +N++ I   +F   TEK G     VE ++ W +     I  + N I
Sbjct: 113 HYEGGIKAFVEFLNKNKTPIHPNVFYFSTEKDGI---GVEISMQWNDGFQENIYCFTNNI 169

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH  G R A+TR +  Y +      K  +S   DD     V ++SV + +P+F+
Sbjct: 170 PQRDGGTHLVGFRTAMTRTLNSYMDKEGSTKKSKVSATGDDAREGLVAVISVKVPDPKFS 229

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    
Sbjct: 230 SQTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVSKIIDAARAREAARKAREMTR 289

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 290 RKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 349

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
             A  +K+ ++Q++  L+ ALGC         D
Sbjct: 350 EKARFDKMLSSQEVATLITALGCGIGRDEYNPD 382


>gi|86169565|gb|ABC87022.1| DNA gyrase subunit B [Leuconostoc pseudomesenteroides KCTC 3652]
          Length = 393

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 144/401 (35%), Positives = 224/401 (55%), Gaps = 13/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK-KEKVRNKR 203
              Y++SGGLHGVG SVVNALS +L V V R NT++   F  G   +P+++  EK   +R
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTDLDVRVVRDNTVYYMDFKVGRVNTPMKQLTEKPTIER 60

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F+PD  IF +   ++   LL   +  A+L+  ++   + ++           E F
Sbjct: 61  GTIVHFKPDADIFRETTVYNYNTLLTRVRELAFLNKGLRISITDNR-----PEEAVSESF 115

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTI 322
           +F GG+K Y+    ++++ I  E    + E+ G     VE A+ +  +    + ++ N I
Sbjct: 116 HFEGGIKEYVSYLNKDKTAIFPEPVYVEGEENGI---VVEAALQYTTDIKDNLRTFTNNI 172

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE+G + ALTR I  YA      +    S+  +D+      I+S+   +P+F 
Sbjct: 173 NTYEGGTHETGFKTALTRVINDYARKNGQLKDNAESLTGEDVREGMTAIVSIKHPDPQFE 232

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + DA++  +    + F  ++++NP  A +++E  +   + RL  ++ RE+  
Sbjct: 233 GQTKTKLGNSDARQATDRMFSETFSRFMMENPAVAKQIVEKGVLAQKARLAAKRAREMTR 292

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +++ +    LPGKLAD + N    +ELFIVEGDSAGGSAKQ RNR  QA+LP+RGKILNV
Sbjct: 293 KQSGLEIGNLPGKLADNTSNDPEISELFIVEGDSAGGSAKQGRNRLTQAILPIRGKILNV 352

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +++  N++I  L  A+G      +  E   Y KVII
Sbjct: 353 GKASLDRVLANEEIRSLFTAMGTGFGDDFNVEKANYHKVII 393


>gi|126035218|gb|ABN72362.1| gyrase B subunit [Escherichia coli]
 gi|126035226|gb|ABN72366.1| gyrase B subunit [Escherichia coli]
 gi|126035232|gb|ABN72369.1| gyrase B subunit [Escherichia coli]
          Length = 387

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 144/398 (36%), Positives = 222/398 (55%), Gaps = 16/398 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTM 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ 
Sbjct: 60  VRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYE 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   
Sbjct: 113 GGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQR 169

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QT
Sbjct: 170 DGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQT 229

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKT 442
           K KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK 
Sbjct: 230 KDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKG 289

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 ALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 349

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
             +K+ ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 350 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNII 387


>gi|110612673|gb|ABG78299.1| GyrB [uncultured bacterium]
          Length = 401

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 157/413 (38%), Positives = 232/413 (56%), Gaps = 17/413 (4%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD S+Y++SGGLHGVG+SVVNALSD L +T+ R   +  Q++  G P++PL        +
Sbjct: 1   FDASSYKVSGGLHGVGVSVVNALSDYLLLTIHRDGRVHRQEYRLGDPVAPLAVVGP-SEQ 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
           RGT I F+P  +IF     F+   L K  +  ++L+  V+     ++E          + 
Sbjct: 60  RGTTIRFKPSAQIFT-HIQFNHDVLAKRLRELSFLNSGVRIELIDERENT-------SDV 111

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           F   GGL+ +++    +R+ +   I   KT+       T+E A+ W +     +  Y N 
Sbjct: 112 FQHEGGLQAFVKYLNRSRTPVHESIPWFKTQDGPV---TIEVALQWNDSYQESMFCYTNN 168

Query: 322 ILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R ALTR +  Y   E++  K  +    DD       ILSV + +P+F
Sbjct: 169 IPQKDGGTHLAGFRSALTRTLNDYIEKEMSAKKDRVPTTGDDAREGLTAILSVKLPDPKF 228

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EV 438
           + QTK KLVS + +  VE A+      +L+++P +A  ++  ++E +  R   RK R   
Sbjct: 229 SSQTKDKLVSSEVKGIVEAAVAAKLQDFLLEHPQDAKAIIAKMLEAARAREAARKAREMT 288

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +     +E+FIVEGDSAGGSAKQ R+R  QA+LPL+GKILN
Sbjct: 289 RRKGALDIAGLPGKLADCQEKDPALSEIFIVEGDSAGGSAKQGRDRRTQAILPLKGKILN 348

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAH 550
           V  A  +K+ ++ ++  L+ ALGC       +   LRY +VIIMTDADVDG+H
Sbjct: 349 VEKARFDKMLSSAEVGTLITALGCGIGKDDFDLAKLRYHRVIIMTDADVDGSH 401


>gi|126035296|gb|ABN72401.1| gyrase B subunit [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
          Length = 386

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 144/397 (36%), Positives = 221/397 (55%), Gaps = 16/397 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P +PL       +K GT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ G
Sbjct: 60  RFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K +++   +N++ I   IF   TEK G     +E A+ W +     I  + N I   +
Sbjct: 113 GIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GIEVALQWNDGFQENIYCFTNNIPQRD 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK
Sbjct: 170 GGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTK 229

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTA 443
            KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A
Sbjct: 230 DKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGA 289

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A 
Sbjct: 290 LDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 349

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            +K+ ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 350 FDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSII 386


>gi|313747322|dbj|BAJ41208.1| DNA gyrase subunit B [Virgibacillus halophilus]
 gi|313747324|dbj|BAJ41209.1| DNA gyrase subunit B [Virgibacillus halophilus]
          Length = 389

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 141/400 (35%), Positives = 214/400 (53%), Gaps = 15/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS  L V V R   I    F RG+P + ++   +  +  G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSSNLEVYVHRDGKIHFLGFERGVPQNEIKVIGET-DITG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+  F+PDP IF +   FD   L +  +  A+L+  ++  +   +   E       EEF+
Sbjct: 60  TKTHFKPDPDIFTETTVFDDDTLSQRIRELAFLNKGIRITFEDKRSGKE------PEEFH 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  Y+     N+ ++       +   +G    TV+ A+ + +     I S+ N I 
Sbjct: 114 YEGGISEYVAYINRNKEVLHEPF-FAEGNAEGI---TVDVAVQYNDGFTSNIYSFANNIH 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHESG + ALTR I  YA  +   +    ++  DD+      I+S+   +P+F G
Sbjct: 170 TYEGGTHESGFKTALTRVINDYARKSNLLKDNDTNLSGDDVREGITAIVSIKHPDPQFEG 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNR 440
           QTKTKL + + +   +    + F  +L +NP     +++  ++        ++ +    R
Sbjct: 230 QTKTKLGNSEVRTITDALFSEAFSKFLFENPTVGRIIVDKGLMASRARAAAKKARDLTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS   A  +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 290 KSALEVSSLPGKLADCSSRNAEISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +KI +N +I  ++ ALG     ++     RY K++I
Sbjct: 350 KARLDKILSNNEIRTIITALGTGIGEEFDISKARYHKIVI 389


>gi|126035260|gb|ABN72383.1| gyrase B subunit [Enterobacter cloacae]
          Length = 388

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 147/399 (36%), Positives = 224/399 (56%), Gaps = 16/399 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL       +K GT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYQHGVPEAPLAVTGDT-DKTGTM 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ 
Sbjct: 60  VRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE-------DHFHYE 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   
Sbjct: 113 GGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQR 169

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QT
Sbjct: 170 DGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQT 229

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKT 442
           K KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    RK 
Sbjct: 230 KDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKG 289

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 ALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 349

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
             +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 388


>gi|20387138|dbj|BAB91269.1| gyrase B [Streptomyces cinnamoneus subsp. lanosus]
 gi|20387140|dbj|BAB91270.1| gyrase B [Streptomyces cinnamoneus subsp. sparsus]
          Length = 399

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 138/401 (34%), Positives = 216/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL+K E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGFRWTQDYKLGVPTAPLQKNEAT-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  ++   +  + +  ++ G P   ++
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLRISLTDLRADHVDEEGKPLTVDY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTI 322
           ++ GG+  +++     +  +          +      +VE A+ W  +  E + S+ NTI
Sbjct: 119 HYEGGIVDFVKYLNSRKGELIHPTVIDVDAEDKERMLSVEIAMQWNSQYSEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I +YA   +   ++  ++  +D+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGEDIREGLTAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+  + +    +L +NP EA  ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKVVHEHLTDWLDRNPNEAADIIRKGIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  N ++  L+ A G      +    LRY K+I+
Sbjct: 359 EKARVDKILQNTEVQALISAFGTGVHEDFDIAKLRYHKIIL 399


>gi|20387164|dbj|BAB91282.1| gyrase B [Streptomyces kashimirensis]
          Length = 399

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 137/401 (34%), Positives = 215/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL++ E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGFRWTQDYKLGVPTAPLQQNEAT-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  +    + ++ +  ++ G      +
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLTISLTDERPDHVDEEGKALTVRY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTI 322
           ++ GG+  +++     +  +          +      ++E ++ W  +  E + S+ NTI
Sbjct: 119 HYEGGISDFVRYLNSRKGELVHPTVIAFEAEDKERLLSLEVSMQWNTQYSEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I +YA   +   ++  ++  DD+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGDDIREGLTAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+  + +    +L +NP EA  ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKVVHEQLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLETASLPGKLSDCQSNDPAKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  NQ+I  L+ A G      +    LRY K+I+
Sbjct: 359 EKARIDKILQNQEIQALISAFGTGVHEDFDISKLRYHKIIL 399


>gi|126035290|gb|ABN72398.1| gyrase B subunit [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
 gi|126035292|gb|ABN72399.1| gyrase B subunit [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
          Length = 385

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 143/396 (36%), Positives = 220/396 (55%), Gaps = 16/396 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P +PL       +K GT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ G
Sbjct: 60  RFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K +++   +N++ I   IF   TEK G     +E A+ W +     I  + N I   +
Sbjct: 113 GIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GIEVALQWNDGFQENIYCFTNNIPQRD 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK
Sbjct: 170 GGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTK 229

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTA 443
            KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A
Sbjct: 230 DKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGA 289

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A 
Sbjct: 290 LDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 349

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
            +K+ ++Q++  L+ ALGC   R +Y  + LRY  +
Sbjct: 350 FDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSI 385


>gi|126035340|gb|ABN72423.1| gyrase B subunit [Shigella sonnei]
          Length = 388

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 145/399 (36%), Positives = 223/399 (55%), Gaps = 16/399 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTM 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ 
Sbjct: 60  VRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYE 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   
Sbjct: 113 GGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQR 169

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QT
Sbjct: 170 DGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQT 229

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKT 442
           K KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK 
Sbjct: 230 KDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKG 289

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 ALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 349

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
             +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 388


>gi|126035322|gb|ABN72414.1| gyrase B subunit [Shigella boydii]
          Length = 389

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 145/399 (36%), Positives = 223/399 (55%), Gaps = 16/399 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT 
Sbjct: 2   SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTM 60

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ 
Sbjct: 61  VRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYE 113

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   
Sbjct: 114 GGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQR 170

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QT
Sbjct: 171 DGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQT 230

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKT 442
           K KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK 
Sbjct: 231 KDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKG 290

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 291 ALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 350

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
             +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 351 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 389


>gi|33590344|gb|AAQ22712.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. laumondii]
          Length = 384

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 141/392 (35%), Positives = 215/392 (54%), Gaps = 15/392 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS++L + + R   +  Q +  G+P SPL+   +   + G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGET-EQTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           TR+ F P    F D   F    L K  +  ++L+  V       +   E       + F+
Sbjct: 60  TRVRFWPSMDTFRDNTEFQHDILAKRLRELSFLNSGVSIRLIDKRTNIE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   +F   TEK G     VE ++ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEFLNKNKTPIHPNVFYFSTEKDGI---GVEISMQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH  G R A+TR +  Y +      K  +S   DD     V ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLVGFRTAMTRTLNSYMDKEGSTKKSKVSATGDDAREGLVAVISVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    R
Sbjct: 230 QTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVSKIIDAARAREAARKAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
            A  +K+ ++Q++  L+ ALGC         D
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPD 381


>gi|108946650|gb|ABG23673.1| gyrase subunit B [Leptospira kirschneri]
          Length = 137

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 74/138 (53%), Positives = 103/138 (74%), Gaps = 1/138 (0%)

Query: 51  ILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVV 110
           ILEGLE VR RPGMYIG  DE  LH +  EV+DN++DE +AG+   I++S+  +  + V 
Sbjct: 1   ILEGLEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEIKISILPDNIVEVK 60

Query: 111 DNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELH 170
           DNGRGIPV+ HP     ST+E+++T LHAGGKF+N  Y++SGGLHGVG+SVVNALS+ L 
Sbjct: 61  DNGRGIPVDIHP-DKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYLE 119

Query: 171 VTVARQNTIFSQKFSRGI 188
           V V ++  +++QK+ +G+
Sbjct: 120 VEVHQKGKVYTQKYEKGV 137


>gi|164690655|dbj|BAF98611.1| gyrase B [Sporolactobacillus nakayamae subsp. nakayamae]
          Length = 389

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 152/400 (38%), Positives = 223/400 (55%), Gaps = 15/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              YE+SGGLHGVG SVVNALS  + V V R   ++ Q++ RG P + L+      ++ G
Sbjct: 1   GGGYEVSGGLHGVGASVVNALSTTMWVKVYRNGHVYYQEYHRGKPAADLKIIGD-SDQTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F PDP+IF D   FD   L    +  A+L+  ++      +E  +K      E F+
Sbjct: 60  TTTHFDPDPEIFTDTTTFDYDTLRVRVRELAFLNKNIRISIEDRREEDKK------ETFH 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+++Y++    ++ +I   I   + EK G     VE A+ +      ++ S+ N I 
Sbjct: 114 YEGGIRSYVEYLNRSKEVIHQPIDL-EGEKDGI---KVEIAMQYNSGFASQLYSFANNIH 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G +VALTR I  YA   Q  +    ++  DD+      I+S+   +P+F G
Sbjct: 170 THEGGTHEYGFKVALTRVINDYARKNQFVKSSDPNLTGDDVREGLTAIVSIKHPDPQFEG 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + + +   +    + F  +L++NP  A  ++E  I  S  R   +K RE   R
Sbjct: 230 QTKTKLGNSEVRAITDTLFSEAFSRFLLENPDVARLIIEKGIVASRARTAAKKARELTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+++    LPGKLADCS   A  +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 290 KSSLEVSSLPGKLADCSSKDASISELYIVEGDSAGGSAKQGRDRLFQAILPLRGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  ++I +N +I  ++ ALG     ++  +  RY K+II
Sbjct: 350 KARLDRILSNAEIRAMITALGTGIGDEFNLDKARYHKIII 389


>gi|33590338|gb|AAQ22709.1| DNA gyrase subunit B [Photorhabdus luminescens]
          Length = 384

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 141/392 (35%), Positives = 215/392 (54%), Gaps = 15/392 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS++L + + R   +  Q +  G+P SPL+   +   + G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGET-EQTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           TR+ F P    F D   F    L K  +  ++L+  V       +   E       + F+
Sbjct: 60  TRVRFWPSMDTFRDNTEFQHDILAKRLRELSFLNSGVSIRLIDKRTNIE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   +F   TEK G     VE ++ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEFLNKNKTPIHPNVFYFSTEKDGI---GVEISMQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH  G R A+TR +  Y +      K  +S   DD     V ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    R
Sbjct: 230 QTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVSKIIDAARAREAARKAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
            A  +K+ ++Q++  L+ ALGC         D
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPD 381


>gi|126035274|gb|ABN72390.1| gyrase B subunit [Enterobacter cloacae]
          Length = 389

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 147/399 (36%), Positives = 224/399 (56%), Gaps = 16/399 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL       +K GT 
Sbjct: 2   SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYQHGVPEAPLAVTGDT-DKTGTM 60

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ 
Sbjct: 61  VRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE-------DHFHYE 113

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   
Sbjct: 114 GGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQR 170

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QT
Sbjct: 171 DGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQT 230

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKT 442
           K KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    RK 
Sbjct: 231 KDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKG 290

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 291 ALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 350

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
             +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 351 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 389


>gi|126035220|gb|ABN72363.1| gyrase B subunit [Escherichia coli]
          Length = 387

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 144/398 (36%), Positives = 222/398 (55%), Gaps = 16/398 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTM 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ 
Sbjct: 60  VRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYE 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   
Sbjct: 113 GGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQR 169

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QT
Sbjct: 170 DGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQT 229

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKT 442
           K KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK 
Sbjct: 230 KDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKG 289

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 ALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 349

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
             +K+ ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 350 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSII 387


>gi|33590322|gb|AAQ22701.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. hainanensis]
          Length = 383

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 141/393 (35%), Positives = 216/393 (54%), Gaps = 15/393 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS++L + + R   +  Q +  G+P SPL+   +   + 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGET-EQT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GTR+ F P    F +   F    L K  +  ++L+  V       +   E       + F
Sbjct: 60  GTRVRFWPSMDTFRNNTEFQHDILAKRLRELSFLNSGVSIRLIDKRTNTE-------DHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           ++ GG+K +++   +N++ I   +F   TEK G     VE ++ W +     I  + N I
Sbjct: 113 HYEGGIKAFVEFLNKNKTPIHPNVFYFSTEKDGI---GVEISMQWNDGFQENIYCFTNNI 169

Query: 323 LTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH  G R A+TR +  Y +      K  +S   DD     V ++SV + +P+F+
Sbjct: 170 PQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFS 229

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    
Sbjct: 230 SQTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVSKIIDAARAREAARKAREMTR 289

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 290 RKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 349

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
             A  +K+ ++Q++  L+ ALGC         D
Sbjct: 350 EKARFDKMLSSQEVATLITALGCGIGRDEYNPD 382


>gi|126035262|gb|ABN72384.1| gyrase B subunit [Enterobacter cloacae]
 gi|126035264|gb|ABN72385.1| gyrase B subunit [Enterobacter cloacae]
          Length = 389

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 147/399 (36%), Positives = 224/399 (56%), Gaps = 16/399 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL       +K GT 
Sbjct: 2   SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYQHGVPDAPLAVTGDT-DKTGTM 60

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ 
Sbjct: 61  VRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE-------DHFHYE 113

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   
Sbjct: 114 GGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQR 170

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QT
Sbjct: 171 DGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQT 230

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKT 442
           K KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    RK 
Sbjct: 231 KDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKG 290

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 291 ALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 350

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
             +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 351 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 389


>gi|84310526|gb|ABC55411.1| DNA gyrase subunit B [Bacillus subtilis]
          Length = 390

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 147/399 (36%), Positives = 218/399 (54%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            S Y+   GLHGVG SVVNALS EL VTV R   I  Q + RG+P++ LE   +  +  G
Sbjct: 1   GSGYKYPAGLHGVGASVVNALSTELDVTVHRDGKIHRQTYKRGVPVTDLEIIGET-DHTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F PDP+IF +   +D   L    +  A+L+  V       +E  E+        ++
Sbjct: 60  TTTHFVPDPEIFSETTEYDYDLLANRVRELAFLTKGVNITIEDKREGQERKNE-----YH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K+Y++    ++ ++  E    + EK G    TVE A+ + +     I S+ N I 
Sbjct: 115 YEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNIN 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G +  LTR I  YA      +    ++  DD+      I+S+   +P+F G
Sbjct: 172 TYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + +A+   +       + ++++NP  A K+++  +  +  R+  +K RE   R
Sbjct: 232 QTKTKLGNSEARTITDTLFSTAMETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 292 KSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
            A  +KI +N ++  ++ ALG      +  E  R  KV+
Sbjct: 352 KARLDKILSNNEVRSMITALGTGIGEDFNLEKARSPKVV 390


>gi|303305924|gb|ADM13621.1| gyrase B [Planococcaceae bacterium MW-10]
          Length = 393

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 141/397 (35%), Positives = 213/397 (53%), Gaps = 13/397 (3%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG SVVNALS+   V V R   I   KF RG     L+      +  G+   
Sbjct: 5   QVSGGLHGVGASVVNALSEHAEVIVKRDGKIHEIKFERGAVTQELKVIGDA-DTTGSTTR 63

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F+ DP+IF +   ++   L    +  AYL+  +      ++E  E+        +++ GG
Sbjct: 64  FKADPEIFTETTVYEFDILANRIRELAYLNRGLAITIQDEREGEEQKKT-----YHYEGG 118

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEG 327
           +K+Y++     +  +  E    + EK+G    T+E A+ +       I S+ N I T EG
Sbjct: 119 IKSYVEHLNAKKEPLHEEPIFVEGEKEGI---TIEIAMQYNAGYNAAIFSFANNINTYEG 175

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTHESG + ALTR I  YA      +    ++  DD+      I+S+   +P+F GQTKT
Sbjct: 176 GTHESGFKTALTRVINDYARKNNILKEAEANLTGDDVREGLTAIISIKHPDPQFEGQTKT 235

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIR 445
           KL + +  +   +   D F+ +L++NP  A ++++  +  +     ++ +    RK+A+ 
Sbjct: 236 KLGNSEVSQITNSLFSDGFERFLLENPSVARQVVDKGMMAARA-RAKKAREFTRRKSALE 294

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS      +EL+IVEGDSAGGSAK  R+R  QA+LPLRGKILNV  A  +
Sbjct: 295 VSSLPGKLADCSSRNPAESELYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLD 354

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           +I  N +I  ++ ALG     ++  E  RY KV+IMT
Sbjct: 355 RILGNNEIRAMITALGTGIGGEFNLEKARYHKVVIMT 391


>gi|126035258|gb|ABN72382.1| gyrase B subunit [Enterobacter cloacae]
          Length = 387

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 146/398 (36%), Positives = 223/398 (56%), Gaps = 16/398 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL       +K GT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYQHGVPEAPLAVTGDT-DKTGTM 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ 
Sbjct: 60  VRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE-------DHFHYE 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   
Sbjct: 113 GGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQR 169

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QT
Sbjct: 170 DGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQT 229

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKT 442
           K KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    RK 
Sbjct: 230 KDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKG 289

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 ALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 349

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
             +K+ ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 350 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSII 387


>gi|20387158|dbj|BAB91279.1| gyrase B [Streptomyces griseoverticillatus]
 gi|20387214|dbj|BAB91307.1| gyrase B [Streptomyces sapporonensis]
          Length = 399

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 139/401 (34%), Positives = 214/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL+K E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGFRWTQDYKLGVPTAPLQKNEAT-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  ++      + +  ++ G P   E+
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLRISLMDLRADHVDEEGKPLSVEY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTI 322
           ++ GG+  ++      +  +          +      +VE A+ W  +  E + S+ NTI
Sbjct: 119 HYEGGIVDFVTYLNSRKGELIHPTVIDIEAEDKERMLSVEIAMQWNSQYSEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I +YA   +   ++  ++  +D+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGEDIREGLTAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+  + +    +L +NP EA  ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKVVHEHLTDWLDRNPNEAADIIRKGIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  N ++  L+ A G      +    LRY K+I+
Sbjct: 359 EKARVDKILQNTEVQALISAFGTGVHEDFDIAKLRYHKIIL 399


>gi|126035208|gb|ABN72357.1| gyrase B subunit [Escherichia coli]
 gi|126035324|gb|ABN72415.1| gyrase B subunit [Shigella boydii]
 gi|126035332|gb|ABN72419.1| gyrase B subunit [Shigella flexneri]
 gi|126035334|gb|ABN72420.1| gyrase B subunit [Shigella flexneri]
          Length = 387

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 144/398 (36%), Positives = 222/398 (55%), Gaps = 16/398 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTM 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ 
Sbjct: 60  VRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYE 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   
Sbjct: 113 GGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQR 169

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QT
Sbjct: 170 DGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQT 229

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKT 442
           K KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK 
Sbjct: 230 KDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKG 289

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 ALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 349

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
             +K+ ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 350 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSII 387


>gi|328349755|emb|CBY89185.1| GyrB protein [Flavobacterium sp. R-37612]
          Length = 399

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 152/394 (38%), Positives = 221/394 (56%), Gaps = 10/394 (2%)

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA-RQNTIFSQKFSRGIPLSP 192
           +T + AGGKFD  +Y++SGGLHGVG+SVVNALS+ L  TV      I+ Q++ +G  L P
Sbjct: 1   MTKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGKIYEQEYEKGKALYP 60

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
           +++  +    RGT +TF PDP IF     +    L    +  ++L+  +   ++  +E  
Sbjct: 61  VKQIGETTK-RGTIVTFYPDPTIFTQTVEYSYDTLSARMRELSFLNKGITVTFTDKRE-L 118

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
           +K G    E F+   GLK Y++    NR      I    +         VE A+ +    
Sbjct: 119 DKDGNFVSEVFHSDEGLKEYIRYLDSNRD---PIIAHVISMDNDKGEIPVEVALIYNTSY 175

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGI 369
              I SY N I T EGGTH  G R  LTR +KKYA+ +    K    I  DD       I
Sbjct: 176 TENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGMLDKLKFDISGDDFREGLTAI 235

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           +SV ++EP+F GQTKTKL + +    V  A+ +  ++YL +NP +A  +++ VI  ++ R
Sbjct: 236 ISVKVQEPQFEGQTKTKLGNREVVSPVSQAVSEMIENYLEENPNDARIIVQKVILAAQAR 295

Query: 430 LRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
              +K RE+  RKT +    LPGKL+DCS+      E+++VEGDSAGG+AKQ R+R+ QA
Sbjct: 296 HAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGGTAKQGRDRAFQA 355

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           +LPLRGKILNV  A   K+  N++I ++  ALG 
Sbjct: 356 ILPLRGKILNVEKAMHHKVFENEEIRNIFTALGV 389


>gi|33590330|gb|AAQ22705.1| DNA gyrase subunit B [Photorhabdus temperata]
          Length = 385

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 141/393 (35%), Positives = 215/393 (54%), Gaps = 15/393 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS++L + + R   +  Q +  G+P SPL+   +   + 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGET-EQT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GTR+ F P    F +   F    L K  +  ++L+  V       +   E       + F
Sbjct: 60  GTRVRFWPSMDTFSNNTEFQHDILAKRLRELSFLNSGVSIRLLDKRTNIE-------DHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           ++ GG+K +++   +N++ I   +F   TEK       VE A+ W +     I  + N I
Sbjct: 113 HYKGGIKAFVEFLNKNKTPIHPNVFYFSTEKDSI---GVEVALQWNDGFQENIYCFTNNI 169

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH  G R A+TR +  Y +      K  +S   DD     V ++SV + +P+F+
Sbjct: 170 PQRDGGTHLVGFRTAMTRTLNSYMDKEGSTKKSKVSATGDDAREGLVAVISVKVPDPKFS 229

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    
Sbjct: 230 SQTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVGKIIDAARAREAARKAREMTR 289

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 290 RKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 349

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
             A  +K+ ++Q++  L+ ALGC         D
Sbjct: 350 EKARFDKMLSSQEVATLITALGCGIGRDEYNPD 382


>gi|20387134|dbj|BAB91267.1| gyrase B [Streptomyces cinnamoneus subsp. albosporus]
          Length = 399

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 137/401 (34%), Positives = 216/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL++ E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGFRWTQDYKLGVPTAPLQQNEAT-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  ++   +  + +  ++ G P   ++
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLRISLTDLRADHVDEEGKPLTVDY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTI 322
           ++ GG+  +++     +  +          +      +VE A+ W  +  E + S+ NTI
Sbjct: 119 HYEGGIVDFVKYLNSRKGELIHPTVIDVDAEDKERMLSVEIAMQWNSQYSEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I +YA   +   ++  ++  +D+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGEDIREGLTAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+  + +    +L +NP EA  ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKVVHEHLTDWLDRNPNEAADIIRKGIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  N ++  L+ A G      +    LRY K+I+
Sbjct: 359 EKARVDKILQNTEVQALISAFGTGVHEDFDIAKLRYHKIIL 399


>gi|208973052|dbj|BAG74369.1| DNA gyrase B [Paenibacillus polymyxa]
          Length = 389

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 143/400 (35%), Positives = 215/400 (53%), Gaps = 15/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG+SVVNALS ++ V V R   ++ Q++ RG P   +          G
Sbjct: 1   GGGYKVSGGLHGVGVSVVNALSSKMIVHVKRDGHVYEQEYHRGAPQYDVRVIGDTEE-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+ TF PD +IF +   +D   L    +  A+L+  +    + ++           + F+
Sbjct: 60  TQTTFYPDEQIFTETTVYDYDTLQTRIRELAFLNKGIAISLTDER-------TGASDTFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  Y+Q   + R  +  +    +  +       VE A+ + +     I S+ N I 
Sbjct: 113 YEGGISEYVQFLNQKREALHEQPIYVEGSRDMIQ---VEVALQYNDSYTENIYSFANNIN 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHESG + ALTR I  YA      +    ++  DD+      I+SV I EP+F G
Sbjct: 170 THEGGTHESGFKSALTRIINDYARKNGLIKDNNANLTGDDVREGLTAIISVKIPEPQFEG 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + + +  VE+   +    +L +NP  + ++++  ++ +  R   RK RE   R
Sbjct: 230 QTKTKLGNSEVRGIVESLFAEKLQEFLEENPSVSRRVVDKSLQAARAREAARKARELTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS   A  +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV 
Sbjct: 290 KSALEISSLPGKLADCSSKDASISELYIVEGDSAGGSAKQGRDRHFQAILPIRGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  ++I ++ +I  +V A+G      +     RY KVII
Sbjct: 350 KARLDRILSSDEIRSMVTAMGTGIGDDFDISKARYHKVII 389


>gi|126035248|gb|ABN72377.1| gyrase B subunit [Enterobacter cloacae]
          Length = 386

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 145/397 (36%), Positives = 222/397 (55%), Gaps = 16/397 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL       +K GT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYQHGVPDAPLAVTGDT-DKTGTM 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ 
Sbjct: 60  VRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE-------DHFHYE 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   
Sbjct: 113 GGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQR 169

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QT
Sbjct: 170 DGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQT 229

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKT 442
           K KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    RK 
Sbjct: 230 KDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKG 289

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 ALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 349

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
             +K+ ++Q++  L+ ALGC   R +Y  + LRY  +
Sbjct: 350 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSI 386


>gi|126035272|gb|ABN72389.1| gyrase B subunit [Enterobacter cloacae]
          Length = 388

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 146/398 (36%), Positives = 223/398 (56%), Gaps = 16/398 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL       +K GT 
Sbjct: 2   SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYQHGVPEAPLAVTGDT-DKTGTM 60

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ 
Sbjct: 61  VRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE-------DHFHYE 113

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   
Sbjct: 114 GGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQR 170

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QT
Sbjct: 171 DGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQT 230

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKT 442
           K KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    RK 
Sbjct: 231 KDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKG 290

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 291 ALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 350

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
             +K+ ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 351 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSII 388


>gi|33590318|gb|AAQ22699.1| DNA gyrase subunit B [Photorhabdus asymbiotica subsp. australis]
          Length = 385

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 141/393 (35%), Positives = 216/393 (54%), Gaps = 15/393 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS++L + + R   +  Q +  G+P SPL+   +   + 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKIVGET-EQT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GTR+ F P    F +   F    L K  +  ++L+  V       +   E       + F
Sbjct: 60  GTRVRFWPSMDTFRNNTEFQHDILAKRLRELSFLNSGVSIRLIDKRTNTE-------DHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           ++ GG+K +++   +N++ I   +F   TEK G     VE ++ W +     I  + N I
Sbjct: 113 HYEGGIKAFVEFLNKNKTPIHPNVFYFSTEKDGI---GVEISMQWNDGFQENIYCFTNNI 169

Query: 323 LTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH  G R A+TR +  Y +      K  +S   DD     V ++SV + +P+F+
Sbjct: 170 PQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFS 229

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    
Sbjct: 230 SQTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVGKIIDAARAREAARKAREMTR 289

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 290 RKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 349

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
             A  +K+ ++Q++  L+ ALGC         D
Sbjct: 350 EKARFDKMLSSQEVATLITALGCGIGRDEYNPD 382


>gi|328349769|emb|CBY89192.1| GyrB protein [Flavobacterium sp. R-36976]
          Length = 398

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 154/393 (39%), Positives = 224/393 (56%), Gaps = 10/393 (2%)

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA-RQNTIFSQKFSRGIPLSPL 193
           T + AGGKFD  +Y++SGGLHGVG+SVVNALS+ L  TV      ++ Q++ +G  L P+
Sbjct: 1   TKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGKVYEQEYEKGKALYPV 60

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           ++  +    RGT +TF PDP IF     +    L    +  +YL+  +   ++  +E  +
Sbjct: 61  KQIGETTK-RGTIVTFYPDPTIFTQTVEYSYDTLSARMRELSYLNKGITVTFTDKRE-LD 118

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
           K G    E F+   GLK Y++    NR  I + + +   EK       VE A+ +     
Sbjct: 119 KDGNFVSEIFHSDDGLKEYIRYLDGNREPIIAHVISMDHEK---GEIPVEVALIYNTSYT 175

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGIL 370
             I SY N I T EGGTH  G R  LTR +KKYA+ +    K    I  DD       I+
Sbjct: 176 ENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGMLDKLKFDISGDDFREGLTAII 235

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV ++EP+F GQTKTKL + +    V  A+ +  ++YL +NP +A  +++ VI  ++ R 
Sbjct: 236 SVKVQEPQFEGQTKTKLGNREVVSPVSQAVSEMIENYLEENPNDARIIVQKVILAAQARH 295

Query: 431 RRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             +K RE+  RKT +    LPGKL+DCS+      E+++VEGDSAGG+AKQ R+R+ QA+
Sbjct: 296 AAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGGTAKQGRDRAFQAI 355

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           LPLRGKILNV  A   K+  N++I ++  ALG 
Sbjct: 356 LPLRGKILNVEKAMHHKVFENEEIRNIFTALGV 388


>gi|33590352|gb|AAQ22716.1| DNA gyrase subunit B [Photorhabdus temperata subsp. tasmaniensis]
          Length = 385

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 141/393 (35%), Positives = 215/393 (54%), Gaps = 15/393 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS++L + + R   +  Q +  G+P SPL+   +   + 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGET-EQT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GTR+ F P    F +   F    L K  +  ++L+  V       +   E       + F
Sbjct: 60  GTRVRFWPSMDTFSNNTEFQHDILAKRLRELSFLNSGVSIRLLDKRTNIE-------DHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           ++ GG+K +++   +N++ I   +F   TEK       VE A+ W +     I  + N I
Sbjct: 113 HYEGGIKAFVEFLNKNKTPIHPNVFYFSTEKDSI---GVEVALQWNDGFQENIYCFTNNI 169

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH  G R A+TR +  Y +      K  +S   DD     V ++SV + +P+F+
Sbjct: 170 PQRDGGTHLVGFRTAMTRTLNSYMDKEGYTKKSKVSATGDDAREGLVAVISVKVPDPKFS 229

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    
Sbjct: 230 SQTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVGKIIDAARAREAARKAREMTR 289

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 290 RKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 349

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
             A  +K+ ++Q++  L+ ALGC         D
Sbjct: 350 EKARFDKMLSSQEVATLITALGCGIGRDEYNPD 382


>gi|86169571|gb|ABC87025.1| DNA gyrase subunit B [Fructobacillus ficulneus]
          Length = 393

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 141/401 (35%), Positives = 215/401 (53%), Gaps = 13/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL-EKKEKVRNKR 203
              Y++SGGLHGVG SVVNALS +L V V R   ++   F  G   + + +K   +  +R
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTDLDVQVVRDGQLYYMDFQTGHVKTQMTKKDGPLPIER 60

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F+PD  IF +   ++   LL   +  A+L+  ++      +        P KE F
Sbjct: 61  GTVVHFKPDADIFQETTVYNYQTLLTRVRELAFLNKGLRISIEDKRSD-----EPLKESF 115

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTI 322
           +F GG+K Y+    E R  +  E    + E+ G     VE A+ +       + ++ N I
Sbjct: 116 HFEGGIKEYVSYLDEEREPLFEEPVYVEGEENGI---VVEVALQYTTGVKENLKTFTNNI 172

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE+G + ALTR I  YA   +  +    S+  +D+      I+S+   +P+F 
Sbjct: 173 NTYEGGTHETGFKTALTRVINDYARKQKLIKEGAESLTGEDVREGMTAIVSIKHPDPQFE 232

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + DA++  +    + F  ++++NP  A +++E        RL  ++ RE+  
Sbjct: 233 GQTKTKLGNSDARQATDRMFSETFSRFMLENPAVARQIVEKGALAQRARLSAKRAREMTR 292

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +++ +    LPGKLAD +      +ELFIVEGDS+GGSAKQ RNR  QA+LP+RGKILNV
Sbjct: 293 KQSGLEISNLPGKLADNTSKDPAISELFIVEGDSSGGSAKQGRNRLTQAILPIRGKILNV 352

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +++  N++I  L  ALG      +  E   Y K+II
Sbjct: 353 GKATLDRVLANEEIRSLFTALGSGFGDDFNVEKANYHKIII 393


>gi|85541235|gb|ABC70858.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Manhattan]
          Length = 388

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 143/398 (35%), Positives = 221/398 (55%), Gaps = 16/398 (4%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F
Sbjct: 60  GTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           ++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I
Sbjct: 113 HYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNI 169

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+
Sbjct: 170 PQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFS 229

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    
Sbjct: 230 SQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTR 289

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL++VEGDSAGG AKQ RNR N A+LPL+GKILNV
Sbjct: 290 RKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGFAKQGRNRKNPAILPLKGKILNV 349

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYE 536
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY 
Sbjct: 350 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYH 387


>gi|85541239|gb|ABC70860.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 389

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 143/400 (35%), Positives = 221/400 (55%), Gaps = 16/400 (4%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P +PL       +K GT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++
Sbjct: 60  MVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHY 112

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I  
Sbjct: 113 EGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQ 169

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ Q
Sbjct: 170 RDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQ 229

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRK 441
           TK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK
Sbjct: 230 TKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRK 289

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            A+    LPGKLADC +     +EL++VEGDSAGG AKQ RNR N A+LPL+GKILNV  
Sbjct: 290 GALDLAGLPGKLADCQERDPALSELYLVEGDSAGGFAKQGRNRKNPAILPLKGKILNVEK 349

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
           A  +K+ ++ ++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 ARFDKMLSSPEVATLITALGCGIGRDEYNPDKLRYHSIII 389


>gi|19909607|dbj|BAB86999.1| DNA gyrase subunit B [Legionella pneumophila]
          Length = 389

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 146/401 (36%), Positives = 233/401 (58%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+ELH+ V R   ++ Q +  G+P SP+ +  +  N  G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELHLLVRRHGKVYEQHYRHGVPESPIAETGEA-NSTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+I F+P  + F +   F    L K  +  +YL+  V      ++         +K+ F+
Sbjct: 60  TQIWFKPSAETFSNI-EFHYDILAKRLRELSYLNSGVCIHLFDER-------TQKKDTFH 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ +   +F+  +EK G     +E A+ W +     I  + N I 
Sbjct: 112 YEGGIKAFVEHLNKNKTPVHPVVFSMTSEKDGI---VIELAMQWNDGYQETIFCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  Y E      K  +S   DD       +LSV + +P+F+ 
Sbjct: 169 QRDGGTHMAGFRAALTRTLNNYIENEGYAKKAKVSPTGDDAREGLTAVLSVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE+ + + F+ +L++NP  A  ++  +I+ +  R   R+ R    R
Sbjct: 229 QTKDKLVSSEVKPAVESCVAEKFNDFLLENPTAAKSIVAKIIDAARAREAARRAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQAR+R  QA+LPL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQEKDPSLSELYLVEGDSAGGSAKQARDRKFQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC     +Y  + +RY ++II
Sbjct: 349 KARFDKMLSSQEVATLITALGCGIGPEEYDPDKVRYHRIII 389


>gi|33590358|gb|AAQ22719.1| DNA gyrase subunit B [Photorhabdus temperata]
          Length = 383

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 140/392 (35%), Positives = 214/392 (54%), Gaps = 15/392 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS++L + + R   +  Q +  G+P SPL+   +   + G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGET-EQTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           TR+ F P    F +   F    L K  +  ++L+  V       +   E       + F+
Sbjct: 60  TRVRFWPSMDTFSNNTEFQHDILAKRLRELSFLNSGVSIRLLDKRTNIE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   +F   TEK       VE A+ W +     I  + N I 
Sbjct: 113 YKGGIKAFVEFLNKNKTPIHPNVFYFSTEKDSI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH  G R A+TR +  Y +      K  +S   DD     V ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDARQGLVAVISVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    R
Sbjct: 230 QTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVGKIIDAARAREAARKAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
            A  +K+ ++Q++  L+ ALGC         D
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPD 381


>gi|82568119|dbj|BAE48494.1| DNA gyrase B [Mechercharimyces mesophilus]
 gi|82568123|dbj|BAE48496.1| DNA gyrase B [Mechercharimyces mesophilus]
          Length = 389

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 141/400 (35%), Positives = 221/400 (55%), Gaps = 15/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y  SGGLHGVG+SV NA S+ L V V R   I  Q++ RG+P + L+   +  ++ G
Sbjct: 1   GEGYTFSGGLHGVGVSVGNAHSEWLEVKVRRDGKIHFQRYERGVPQADLKVIGET-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I F+PDP +F +   +D   L    +  ++L+  +    + ++         + + + 
Sbjct: 60  TEIHFKPDPDVFTETTEYDYNTLQTRLRELSFLNSGLAITITDER-------GDKSDHYK 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           F GG+++Y++    NR ++  E    +  K G     VE A+ + +       SY N I 
Sbjct: 113 FDGGIRSYVEHLNRNREVMHKEPVYIQGTKDG---LNVEIAMQYNDSFSSHIYSYANNIH 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G + ALTR I  YA      +    ++  DD+      I+SV I +P+F G
Sbjct: 170 THEGGTHEAGFKSALTRVINDYARRNNLLKGQDSNLTGDDVREGLTSIISVKIADPQFEG 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + +A+   E+   + F  +L ++P EA K+++  +  +  R   R+ RE   R
Sbjct: 230 QTKTKLGNSEARTVTESLFSEHFHIFLEEHPQEAKKVIQKALTAARAREAARRARELTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC+   A  +EL++VEGDSAGG+AKQ R+R  QA+LPLRGKI+NV 
Sbjct: 290 KNALEVSSLPGKLADCTSRNASSSELYLVEGDSAGGTAKQGRDRMFQAILPLRGKIINVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            +  +K  +N+++  ++ ALG      ++ +  RY K+II
Sbjct: 350 KSRLDKALSNEEVRTIITALGTGVGEDFQIDKARYHKIII 389


>gi|126035230|gb|ABN72368.1| gyrase B subunit [Escherichia coli]
          Length = 386

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 144/397 (36%), Positives = 221/397 (55%), Gaps = 16/397 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ G
Sbjct: 60  RFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   +
Sbjct: 113 GIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRD 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK
Sbjct: 170 GGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTK 229

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTA 443
            KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A
Sbjct: 230 DKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGA 289

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A 
Sbjct: 290 LDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 349

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            +K+ ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 350 FDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNII 386


>gi|20387124|dbj|BAB91262.1| gyrase B [Streptomyces aureoverticillatus]
 gi|20387192|dbj|BAB91296.1| gyrase B [Streptomyces nobilis]
 gi|308152575|dbj|BAJ22266.1| DNA gyrase subunit B [Streptomyces aureoverticillatus]
          Length = 411

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 137/413 (33%), Positives = 210/413 (50%), Gaps = 19/413 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS +L V +      ++Q +  G P +PLE+ E      G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTKLSVEIKTDGYRWTQDYKSGAPTAPLERHEATEE-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE-------------I 251
           T +TF  D  IF     +    L +  Q  A+L+  +    + ++E              
Sbjct: 60  TTVTFWADGDIFETT-EYSFETLARRFQEMAFLNKGLTIKLTDERESAKATAGADSAEAT 118

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
            +         +++ GG+  ++      +  +          +      +VE A+ W  +
Sbjct: 119 DDTVEEVRTVTYHYEGGIVDFVTYLNSRKGDVIHPTVIDIEAEDKERMLSVEIAMQWNSQ 178

Query: 312 NPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVG 368
             E + S+ NTI T EGGTHE G R A+T  + +YA   +   ++  ++  +D+      
Sbjct: 179 YSEGVYSFANTIHTHEGGTHEEGFRAAMTGLVNRYARDKKLLREKDDNLTGEDIREGLTA 238

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           I+SV + EP+F GQTKTKL + +A+  V+  + +    +  +NP EA  ++   I+ +  
Sbjct: 239 IISVKLGEPQFEGQTKTKLGNTEAKTFVQKVVHEHLTDWFDRNPNEAADIIRKGIQAATA 298

Query: 429 RLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
           R+  RK R++ R+  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   Q
Sbjct: 299 RVAARKARDLTRRKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPEYQ 358

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A+LP+RGKILNV  A  +KI  NQ+I  L+ A G      +  E LRY K+I+
Sbjct: 359 AILPIRGKILNVEKARVDKILQNQEIQALISAFGTGVHEDFDIEKLRYHKIIL 411


>gi|111380384|gb|ABH09625.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
          Length = 393

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 145/403 (35%), Positives = 229/403 (56%), Gaps = 15/403 (3%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I  Q +  G+P +PL       ++
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSEKVELTIKRGGHIHQQVYRHGVPDAPLAVIGDT-DE 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GTRI F P  + F +   F    L K  +  ++L+  V    + ++E        + + 
Sbjct: 60  TGTRIRFWPSEETFTNI-EFQYEILAKRLRELSFLNSGVSIKLNDERE------EGKHDH 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           F + GG++ +++    N++ I  ++F   +E+      +VE A+ W +     I  + N 
Sbjct: 113 FMYEGGIQAFVEHLNRNKTPIHPKVFHFDSERDD--GISVEVAMQWNDGFQESIFCFTNN 170

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F
Sbjct: 171 IPQRDGGTHLAGFRGALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVISVKVPDPKF 230

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EV 438
           + QTK KLVS + +  VE+A+ +    +L++NP +A  +   +I+ S  R   RK R   
Sbjct: 231 SSQTKDKLVSSEVKAAVESAMNEKLAEFLLENPADAKTVCTKIIDASRAREAARKAREMT 290

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILN
Sbjct: 291 RRKGALDLAGLPGKLADCQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILN 350

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
           V  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +II
Sbjct: 351 VEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIII 393


>gi|210142368|dbj|BAG80975.1| DNA gyrase subunit B [Paenibacillus antarcticus]
          Length = 389

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 155/400 (38%), Positives = 225/400 (56%), Gaps = 15/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG+SVVNALS+++ VTV R+  I+ Q++ RG P   ++      ++ G
Sbjct: 1   GGGYKVSGGLHGVGVSVVNALSEKVVVTVKREGHIYQQEYRRGAPQYDVKVIGD-SDEHG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF PDP+IF +   +D A LL   +  A+L+  +    + ++             F 
Sbjct: 60  TTVTFHPDPEIFTETTEYDYATLLTRVREIAFLNKGIALTLNDER-------TESSVRFM 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K Y++   E +  +  E    +  +       VE A+ + +     I S+CN I 
Sbjct: 113 YEGGIKEYVKFLNEKKEALHEEPIYVEGSRD---MMQVEVALQYNDSYTENIYSFCNNIN 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHESG + ALTR I  YA  T        ++  DD+      I+SV I EP+F G
Sbjct: 170 THEGGTHESGFKSALTRIINDYARKTGVIKDSNSNLSGDDVREGLTAIISVKIPEPQFEG 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + + +  VE+   +    +L +NP  + ++LE  ++ S  R   RK RE   R
Sbjct: 230 QTKTKLGNSEVRGIVESLFSEKLQEFLEENPAVSRRILEKGLQASRAREAARKARELTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS   A  +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 290 KSALEVSALPGKLADCSSKDASISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  ++I +N +I +++ A+G      +     RY KVII
Sbjct: 350 KARLDRILSNAEIRNMITAMGTGIGEDFDLSKARYHKVII 389


>gi|126035200|gb|ABN72353.1| gyrase B subunit [Escherichia coli]
          Length = 385

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 143/396 (36%), Positives = 220/396 (55%), Gaps = 16/396 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ G
Sbjct: 60  RFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   +
Sbjct: 113 GIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRD 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK
Sbjct: 170 GGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTK 229

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTA 443
            KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A
Sbjct: 230 DKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGA 289

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A 
Sbjct: 290 LDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 349

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
            +K+ ++Q++  L+ ALGC   R +Y  + LRY  +
Sbjct: 350 FDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNI 385


>gi|19909643|dbj|BAB87017.1| DNA gyrase subunit B [Serratia marcescens subsp. marcescens]
          Length = 389

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 142/400 (35%), Positives = 219/400 (54%), Gaps = 16/400 (4%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS++L + + R+  +  Q +S G P +PL    +   + GT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYSHGEPQAPLTVVGET-EQTGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            + F P  + F +   F+   L K  +  ++L+  V       +   E       + F++
Sbjct: 60  MVRFWPSHQTFTNVTDFEYDILAKRLRELSFLNSGVSIRLKDKRTDRE-------DHFHY 112

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG+K +++   +N++ I   +F   T K       VE A+ W +     I  + N I  
Sbjct: 113 EGGIKAFVEYLNKNKTPIHPNVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQ 169

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH  G R A+TR +  Y E      K  +S   DD     + ++SV + +P+F+ Q
Sbjct: 170 RDGGTHLVGFRTAMTRTLNSYMEKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQ 229

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRK 441
           TK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    RK
Sbjct: 230 TKDKLVSSEVKTAVETLMNEKLVDYLMENPGDAKIVVGKIIDAARAREAARKAREMTRRK 289

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  
Sbjct: 290 GALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 349

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVII 540
           A  +K+ ++Q++  L+ ALGC         + LRY  +II
Sbjct: 350 ARFDKMLSSQEVATLITALGCGIGRDEYSPDKLRYHSIII 389


>gi|285804190|gb|ADC35603.1| DNA topoisomerase IV subunit B [Geobacillus thermocatenulatus]
          Length = 395

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 138/407 (33%), Positives = 209/407 (51%), Gaps = 20/407 (4%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
               Y+ SGGLHGVG SVVNALS+ L VT+ R   I+ Q+F  G       +K    NK 
Sbjct: 1   GQGGYKTSGGLHGVGASVVNALSEWLVVTIHRDGFIYRQRFEHGGKPVTTLEKIGTTNKT 60

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT I F+PDP IF     FD   L +  +  A+L   +K     ++           + F
Sbjct: 61  GTIIQFKPDPTIFSTTV-FDYETLSERLRESAFLLKGLKIELVDER-------TGMHDVF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTI 322
           ++  G++ ++    E + ++   +     E+ G     VE+A  + +   E   S+ N +
Sbjct: 113 HYENGIEAFVAYLNEEKDVLHPVV-YFSGEQHGI---EVEFAFQFHDGYSENVLSFVNNV 168

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--E 378
            T +GGTHE+G + A+TR   +YA       ++  ++   D+      ++SV I E   +
Sbjct: 169 RTKDGGTHEAGAKTAMTRVFNEYARRVGLLKEKDKNLEGSDIREGLSAVVSVRIPEHLLQ 228

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
           F GQTK KL + +A+  V+  + +   ++L +NP  +T L++  I   + R   RK RE 
Sbjct: 229 FEGQTKGKLGTSEARSAVDAVVSEQLTYFLQENPDVSTMLIKKAIRAYQAREAARKAREE 288

Query: 439 NRKTAIRKLR---LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
            R    RK +   L GKL           EL++VEGDSAGGSAKQ R+R  QAVLPLRGK
Sbjct: 289 ARSDKKRKGKEALLSGKLTPAQGRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGK 348

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           ++N   A    I  N++I  ++ A+G    + +  ED+ Y+KVIIMT
Sbjct: 349 VINTEKAKLGDILKNEEINTIIHAIGGGVGADFSLEDVNYDKVIIMT 395


>gi|33590314|gb|AAQ22697.1| DNA gyrase subunit B [Photorhabdus asymbiotica subsp. australis]
          Length = 383

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 141/393 (35%), Positives = 216/393 (54%), Gaps = 15/393 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS++L + + R   +  Q +  G+P SPL+   +   + 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKIVGET-EQT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GTR+ F P    F +   F    L K  +  ++L+  V       +   E       + F
Sbjct: 60  GTRVRFWPSMDTFRNNTEFQHDILAKRLRELSFLNSGVSIRLIDKRTNTE-------DHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           ++ GG+K +++   +N++ I   +F   TEK G     VE ++ W +     I  + N I
Sbjct: 113 HYEGGIKAFVEFLNKNKTPIHPNVFYFSTEKDGI---GVEISMQWNDGFQENIYCFTNNI 169

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH  G R A+TR +  Y +      K  +S   DD     V ++SV + +P+F+
Sbjct: 170 PQRDGGTHLVGFRTAMTRTLNSYMDKEGSTKKSKVSATGDDAREGLVAVISVKVPDPKFS 229

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    
Sbjct: 230 SQTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVSKIIDAARAREAARKAREMTR 289

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 290 RKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 349

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
             A  +K+ ++Q++  L+ ALGC         D
Sbjct: 350 EKARFDKMLSSQEVATLITALGCGIGRDEYNPD 382


>gi|269799066|gb|ACZ43811.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 348

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 110/328 (33%), Positives = 181/328 (55%), Gaps = 15/328 (4%)

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  +G ++V D+GRGIPV+ H +    S  E+ILT LHAGGKFD+++Y++SGGLHGVG+S
Sbjct: 1   IHDDGSVSVSDDGRGIPVDIHEE-EGVSAAEVILTVLHAGGKFDDNSYKVSGGLHGVGVS 59

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L +T+ R   I +Q +  G+P  P+ +   V +  GT + F P  + F +  
Sbjct: 60  VVNALSKKLELTIFRHGKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFWPSHETFTNTL 118

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L K  +  ++L+  V      ++E        + + F + GG+K ++     N+
Sbjct: 119 -FHYDILAKRLRELSFLNSGVSIKLIDERED------GKSDHFVYEGGIKAFVDYLNVNK 171

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + I+ + F    E++     TVE A+ W +     I  + N I   +GGTH +G R ALT
Sbjct: 172 TPINKDAFHFSVERED--GITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGALT 229

Query: 340 RGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           R +  Y E     +  ++ +   DD       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 230 RTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAV 289

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIE 424
           E A+ +    YL++NP EA+ ++  +I+
Sbjct: 290 EQAMGEKLAEYLLENPKEASTVVTKIID 317


>gi|18147159|dbj|BAB83060.1| DNA gyrase subunit B [Alcanivorax sp. OM-2]
          Length = 395

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 153/407 (37%), Positives = 221/407 (54%), Gaps = 18/407 (4%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD++TY++SGGLHGVG+SVVNALS+EL +T+ R   +  Q +  G+P  PLE       
Sbjct: 1   KFDDNTYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYRHGVPDKPLEVVGNT-E 59

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             GT I FRP  + F +   F    L K  +  ++L+  V+     ++   E       E
Sbjct: 60  TSGTSIHFRPSGETFSNI-KFHYDILAKRLRELSFLNSGVRIHLKDERNGEE-------E 111

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
            F + GGL  ++     N++ ++         E+ G     VE A+ W +     I  + 
Sbjct: 112 VFEYEGGLSAFVSYLNTNKTPLNQVFHFQFDREEDGI---AVEVAMQWNDSYQENIFCFT 168

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH +G R ALTR +  Y +      K   +   DD       ++SV + +P
Sbjct: 169 NNIPQRDGGTHLAGFRGALTRTLNNYMDKEGLLKKEKANPSGDDAREGLTAVISVKVPDP 228

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-R 436
           +F+ QTK KLVS + +  VE  + + F  YL++NP EA  + + +I+ +  R   RK   
Sbjct: 229 KFSSQTKDKLVSSEVKAAVEQTMGELFQDYLLENPGEAKAITQKIIDAARARDAARKARE 288

Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              RK A+    LPGKLADC Q     +EL+IVEGDSAGGSAKQ R+R NQA+LPL+GKI
Sbjct: 289 MTRRKGALDIAGLPGKLADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKI 348

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMT 542
           LNV  A  +K+ ++Q++  L+ ALGC         E LRY ++IIMT
Sbjct: 349 LNVEKARFDKMLSSQEVGTLITALGCGIGRDEYNVEKLRYHRIIIMT 395


>gi|21238921|dbj|BAB96566.1| DNA gyrase subunit B [Microbacterium imperiale]
          Length = 409

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 133/410 (32%), Positives = 204/410 (49%), Gaps = 15/410 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG SVVNALS  L V V RQ  ++ Q F  G       +K +  ++ G
Sbjct: 1   GGGYAVSGGLHGVGSSVVNALSTRLDVEVRRQGHVWRQSFRTGGVPQAPLEKGEATDETG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------EIAEKY 255
           T ITF PDP IF     FD   L    Q +A+L+  ++      +         E     
Sbjct: 61  TTITFWPDPDIFETV-EFDYDTLRTRFQQQAFLNKGLRIALDDQRPDSAYVVDLEDGTSE 119

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-P 313
                ++F +  GL  Y++   + R          + E +      ++E A+ W      
Sbjct: 120 NRRPHDDFLYERGLVDYVEYLNKLRKTEVVNDEIIEVESEDTVRHISLELAMQWTTSYTE 179

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
            + ++ NTI T EGGTHE G R ALT  +  YA       ++  ++  DD+      ++S
Sbjct: 180 NVFTFANTINTHEGGTHEEGFRAALTTKVNAYAREKGLLKEKDDNLTGDDIREGLTAVIS 239

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V + EP+F GQTKTKL + +A+  V+  + D    +L +NP +A +++   ++ +  RL 
Sbjct: 240 VKLSEPQFEGQTKTKLGNTEAKAFVQKIVGDQLTDWLDRNPAQAKRVIMKAVDAATARLA 299

Query: 432 RRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            RK RE  R+ +      +P KL DC+      +E+F+VEGDSAGGSA + R+   QA+L
Sbjct: 300 ARKARETARRKSVFESASMPDKLKDCTSKDPSISEIFLVEGDSAGGSAVRGRDPETQAIL 359

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            LRGK+LNV  A  ++   N +I  ++ A G      +  E  RY K+++
Sbjct: 360 SLRGKVLNVEKARLDRALGNNEIQAIISAFGTGIGEDFSVEKARYHKIVL 409


>gi|38224496|gb|AAR14142.1| DNA gyrase B subunit [Fusobacterium varium]
          Length = 399

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 146/409 (35%), Positives = 210/409 (51%), Gaps = 14/409 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           +N  Y++SGGLHGVG+SVVNALS    VTV     I+ QK++RG+P   +++        
Sbjct: 1   ENDNYKVSGGLHGVGVSVVNALSLWTDVTVKTDGKIWYQKYNRGVPEEDVKEIGVTTEH- 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F+ D +IF     +D   L    +  AYL+  ++   S  ++   K      EEF
Sbjct: 60  GTTVRFKADHEIFETLI-YDYNTLKNRLKELAYLNKGLEIHLSDSRKEPYKK-----EEF 113

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTI 322
            F GG+  +L+   E    +  E      E        V+ A  +   ++  I S+ N I
Sbjct: 114 KFEGGIVDFLKEITEETEKLIPEPIYMTGEVDNV---AVDIAFLYTVNQSEIIYSFVNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
            T EG +H SG R ALTR I    +      ++   +  +D+      I+SV + +P+F 
Sbjct: 171 NTHEGRSHVSGFRTALTRVINDVGKAQGYLKEKDGKLQGNDIREGVTAIVSVKVPQPQFE 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +    V   +       L  NP +        +   + R   +K RE+  
Sbjct: 231 GQTKTKLGNSEVTGIVSTLVGTNLKIVLEDNPNDHKNNNRENMNSKKAREAAQKARELVL 290

Query: 441 KTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           + + +    LPGKLADCS       E++IVEGDSAGGSAKQ R+RS+QA+LPLRGKILNV
Sbjct: 291 RKSVLEVGSLPGKLADCSSKNPDECEIYIVEGDSAGGSAKQGRDRSHQAILPLRGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
             AG  K   N ++  ++ A G      +  E LRY K+I+MTDADVDG
Sbjct: 351 EKAGLHKSLENNEVRAMITAFGTSIGDSFNIEKLRYGKIILMTDADVDG 399


>gi|68445340|dbj|BAE03171.1| DNA gyrase subunit B [actinobacterium Aac-25]
          Length = 399

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 128/401 (31%), Positives = 210/401 (52%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  L V V  +  +++Q + RG P +PL K  +   + G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSMRLTVAVRTEGHLWTQTYLRGEPTAPLAK-GEAVTETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T + F  D ++F     ++   L +  Q  A+L+  +      ++ E  ++ G      +
Sbjct: 60  TTVAFWADDEVFETT-AYNFETLSRRFQEMAFLNRGLTIELIDERPEYKDEDGNLRSVRY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG+  +++     +  +          +    R   E ++ W  +    + ++ N I
Sbjct: 119 KYDGGISDFVRYINAAKGELVHPQVIEFGAEDVERRIAAEVSLQWNNQYSESVYTFANGI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
            T +GGTHE G R ALT  + +YA+  Q   ++  ++  +D+    V I+SV + EP+F 
Sbjct: 179 NTPDGGTHEEGFRSALTNVVNRYAKDKQLLKEKDDNLSGEDIREGLVAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTK KL + +A+  V+    +    +  +NP E   ++   I+ +  R+  RK RE+ R
Sbjct: 239 GQTKAKLGNTEARTFVQKITYEAIADWFDRNPNEGKDIVRKSIQAATARIAARKARELTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +   + LPGKLADC        E+F+VEGDSAGGSAKQ R+   QA++P+RGKILNV
Sbjct: 299 RKGLLESMALPGKLADCQSTNPAECEIFVVEGDSAGGSAKQGRDPRTQAIMPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +K+  N ++  L+ ALG      +    LRY K+++
Sbjct: 359 EKARIDKVLQNTEVQGLISALGTGIHDDFDVSRLRYHKIVL 399


>gi|126035202|gb|ABN72354.1| gyrase B subunit [Escherichia coli]
          Length = 388

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 145/399 (36%), Positives = 223/399 (55%), Gaps = 16/399 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGESEK-TGTM 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ 
Sbjct: 60  VRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYE 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   
Sbjct: 113 GGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQR 169

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QT
Sbjct: 170 DGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQT 229

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKT 442
           K KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK 
Sbjct: 230 KDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKG 289

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 ALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 349

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
             +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 388


>gi|33590360|gb|AAQ22720.1| DNA gyrase subunit B [Photorhabdus temperata subsp. temperata]
          Length = 383

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 140/392 (35%), Positives = 214/392 (54%), Gaps = 15/392 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS++L + + R   +  Q +  G+P SPL+   +   + G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGET-EQTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           TR+ F P    F +   F    L K  +  ++L+  V       +   E       + F+
Sbjct: 60  TRVRFWPSMDTFSNNTEFQHDILAKRLRELSFLNSGVSIRLLDKRTNIE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   +F   TEK       VE A+ W +     I  + N I 
Sbjct: 113 YKGGIKAFVEFLNKNKTPIHPNVFYFSTEKDSI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH  G R A+TR +  Y +      K  +S   DD     V ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLVGFRTAMTRTLNSYMDKEGSTKKSKVSATGDDARQGLVAVISVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    R
Sbjct: 230 QTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVGKIIDAARAREAARKAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
            A  +K+ ++Q++  L+ ALGC         D
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPD 381


>gi|33590334|gb|AAQ22707.1| DNA gyrase subunit B [Photorhabdus temperata]
          Length = 385

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 141/393 (35%), Positives = 214/393 (54%), Gaps = 15/393 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS++L + + R   +  Q +  G+P SPL+   +   + 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGET-EQT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GTR+ F P    F +   F    L K  +  ++L+  V       +   E       + F
Sbjct: 60  GTRVRFWPSMDTFSNNTEFQHDILAKRLRELSFLNSGVSIRLLDKRTNIE-------DHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           ++ GG+K +++   +N++ I   +F   TEK       VE A+ W +     I  + N I
Sbjct: 113 HYKGGIKAFVEFLNKNKTPIHPNVFYFSTEKDSI---GVEVALQWNDGFQENIYCFTNNI 169

Query: 323 LTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH  G R A+TR +  Y +      K   S   DD     V ++SV + +P+F+
Sbjct: 170 PQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKDSATGDDAREGLVAVISVKVPDPKFS 229

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    
Sbjct: 230 SQTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVGKIIDAARAREAARKAREMTR 289

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 290 RKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 349

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
             A  +K+ ++Q++  L+ ALGC         D
Sbjct: 350 EKARFDKMLSSQEVATLITALGCGIGRDEYNPD 382


>gi|308153114|dbj|BAJ22146.1| DNA gyrase subunit B [Kibdelosporangium aridum]
          Length = 401

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 137/406 (33%), Positives = 218/406 (53%), Gaps = 17/406 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y +SGGLHGVGISVVNALS  L V V R   +++Q +    P++P+ +  +     GT 
Sbjct: 1   SYAVSGGLHGVGISVVNALSTRLEVVVQRDGYVWTQSYRDSEPVAPVAQ-GEATETTGTS 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP-------- 258
           ITF PDP+IF     F+A  + +  Q  A+L+  +      ++   E+            
Sbjct: 60  ITFWPDPQIFETVT-FNAETVARRLQEMAFLNKGLTIVLRDERVSEEEAAEDAEGQAARI 118

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           ++  +++PGGL+ +++     R  +   +   + +  G     VE A+ W       + +
Sbjct: 119 KERTYHYPGGLEDFVKHINHAREAVHKSVIAFEAKGTG---LEVEIAMQWNTGYSESVYT 175

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + NTI T EGGTHE G R ALTR +  YA   +   ++  ++  +D+      I+S+ + 
Sbjct: 176 FANTINTPEGGTHEEGFRAALTRVVNVYARDKKLLKEKDTNLTGEDVREGLAAIVSIKLA 235

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           EP+F GQTK KL + +A+  V+    +   H+   NP EA  ++   +  ++ R+  RK 
Sbjct: 236 EPQFEGQTKQKLGNTEAKTFVQTTSNEHLQHWFEANPAEAKTIVTKAVSSAQARIAARKA 295

Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +E V RK A+    LPGKL DC        EL+IVEGDSAGGSAK+ R+   QA+LP+RG
Sbjct: 296 KELVRRKGALDIGGLPGKLKDCRSTNPEECELYIVEGDSAGGSAKEGRDSRFQAILPIRG 355

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           KI+NV  A  +++  N ++  L+ ALG     ++    LRY K+++
Sbjct: 356 KIINVEKARIDRVLKNTEVQSLITALGTGIHDEFDLSKLRYHKIVL 401


>gi|41387046|gb|AAS01481.1| GyrB [Bacillus sp. H-04]
          Length = 390

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 144/400 (36%), Positives = 219/400 (54%), Gaps = 14/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS EL V V R+  I  QK+ RGIP++ L+      ++ G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F+PDP+IF +   +D   L    +  A+L+  +K      ++  +K      +EF+
Sbjct: 60  TITRFKPDPEIFQETTVYDFDTLATRMRESAFLNRNIKLTIEDKRKHKQK------KEFH 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+K+Y++    ++  I  E    +  K G     VE ++ + E       S+ N I 
Sbjct: 114 YEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIH 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G + ALTR I  Y       +    ++  +D+      I+S+    P+F G
Sbjct: 171 TYEGGTHEVGFKTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNR 440
           QTKTKL + +A+   E+   + F+ +L++NP  A K++E   +        ++ +    R
Sbjct: 231 QTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS      +E++IVE DSAGGSAKQ R+R  QA+LPL+GKI+NV 
Sbjct: 291 KSALEVSSLPGKLADCSSKDPAISEIYIVEDDSAGGSAKQGRDRHFQAILPLKGKIINVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +KI +N ++  ++ A+G      +  E  RY KVII
Sbjct: 351 KARLDKILSNDEVRTIITAIGTNIGGDFDIEKARYHKVII 390


>gi|33590346|gb|AAQ22713.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. akhurstii]
          Length = 383

 Score =  221 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 140/391 (35%), Positives = 214/391 (54%), Gaps = 15/391 (3%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS++L + + R   +  Q +  G+P SPL+   +   + GT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGET-EQTGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           R+ F P    F +   F    L K  +  ++L+  V       +   E       + F++
Sbjct: 60  RVRFWPSMDTFRNNTEFQHDILAKRLRELSFLNSGVSIRLIDKRTNTE-------DHFHY 112

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG+K +++   +N++ I   +F   TEK G     VE ++ W +     I  + N I  
Sbjct: 113 EGGIKAFVEFLNKNKTPIHPNVFYFSTEKDGI---GVEISMQWNDGFQENIYCFTNNIPQ 169

Query: 325 DEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH  G R A+TR +  Y +      K  +S   DD     V ++SV + +P+F+ Q
Sbjct: 170 RDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQ 229

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRK 441
           TK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    RK
Sbjct: 230 TKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVSKIIDAARAREAARKAREMTRRK 289

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  
Sbjct: 290 GALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 349

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           A  +K+ ++Q++  L+ ALGC         D
Sbjct: 350 ARFDKMLSSQEVATLITALGCGIGRDEYNPD 380


>gi|20387136|dbj|BAB91268.1| gyrase B [Streptomyces cinnamoneus subsp. azacoluta]
          Length = 399

 Score =  221 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 138/401 (34%), Positives = 214/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL+K E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGYRWTQDYKLGVPTAPLQKNEAT-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  ++   +  + +  ++ G P   E+
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLRISLTDLRADHVDEEGKPLTVEY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTI 322
           ++  G+  ++      +  +          +      +VE A+ W  +  E + S+ NTI
Sbjct: 119 HYEVGIVDFVTYLNSRKGELIHPTVIDVEAEDKERMLSVEIAMQWNSQYSEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I +YA   +   ++  ++  +D+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGEDIREGLTAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+  + +    +L +NP EA  ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKVVHEHLTDWLDRNPNEAADIIRKGIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  N ++  L+ A G      +    LRY K+I+
Sbjct: 359 EKARVDKILQNTEVQALISAFGTGVHEDFDISKLRYHKIIL 399


>gi|68445352|dbj|BAE03177.1| DNA gyrase subunit B [actinobacterium Aac-49]
          Length = 399

 Score =  221 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 133/401 (33%), Positives = 218/401 (54%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG SVVNALS+ L V V     +++Q++ RG+P +PL+K  +  ++ G
Sbjct: 1   GGGYAVSGGLHGVGSSVVNALSNRLTVAVKTDGHLWTQEYLRGVPTAPLKK-GEAVSETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D +IF     ++   L +  Q  A+L+  V      ++ E  ++ G   +  +
Sbjct: 60  TTVTFWADDEIFETTT-YNFETLSRRFQEMAFLNRGVSIELIDERPEYKDEEGNARQVHY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG+  +++     +  +          +    + + E A+ W  +    + ++ N I
Sbjct: 119 KYDGGISDFVKHLNAAKGEMVHPQVIEFGAEDKERKISAEVALQWNNQYSESVYTFANVI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
            T +GGTHE G R ALT  + +YA+  Q   ++  ++  +D+    V I+SV + EP+F 
Sbjct: 179 QTPDGGTHEEGFRSALTNVVNRYAKEKQLLKEKDDNLSGEDIREGLVAIVSVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VN 439
           GQTK KL + +A+  V+    +    +  +NP EA  ++   I+ +  R+  RK RE   
Sbjct: 239 GQTKAKLGNTEARTFVQKITYESMADWFDRNPNEARDIIRKSIQAATARIAARKARELPR 298

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK  +  + LPGKL+DC        E+F+VEGDSAGGSAKQAR+ + QA++P+RGKILNV
Sbjct: 299 RKGLLESMALPGKLSDCQSTNPVECEIFVVEGDSAGGSAKQARDSAVQAIMPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  N ++  L+ +LG      +    LRY K+++
Sbjct: 359 EKARIDKILQNTEVQGLIWSLGTGIHDAFDVSRLRYHKIVL 399


>gi|111380382|gb|ABH09624.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
          Length = 391

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 143/401 (35%), Positives = 227/401 (56%), Gaps = 15/401 (3%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I  Q +  G+P +PL       ++
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSEKVELTIKRGGHIHQQVYRHGVPDAPLAVIGDT-DE 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GTRI F P  + F +   F    L K  +  ++L+  V    + ++E        + + 
Sbjct: 60  TGTRIRFWPSEETFTNI-EFQYEILAKRLRELSFLNSGVSIKLNDERE------EGKHDH 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           F + GG++ +++    N++ I  ++F   +E+      +VE A+ W +     I  + N 
Sbjct: 113 FMYEGGIQAFVEHLNRNKTPIHPKVFHFDSERDD--GISVEVAMQWNDGFQESIFCFTNN 170

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F
Sbjct: 171 IPQRDGGTHLAGFRGALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVISVKVPDPKF 230

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EV 438
           + QTK KLVS + +  VE+A+ +    +L++NP +A  +   +I+ S  R   RK R   
Sbjct: 231 SSQTKDKLVSSEVKAAVESAMNEKLAEFLLENPADAKTVCTKIIDASRAREAARKAREMT 290

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILN
Sbjct: 291 RRKGALDLAGLPGKLADCQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILN 350

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
           V  A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +
Sbjct: 351 VEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNI 391


>gi|163256321|dbj|BAF95671.1| DNA gyrase subunit B [Bradyrhizobium sp. KO13]
          Length = 271

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 100/281 (35%), Positives = 151/281 (53%), Gaps = 11/281 (3%)

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AG+A  +EV L+ +  +TV D+GRGIPV+ H K    S  E+I+T LHAGGKFD 
Sbjct: 1   VDEALAGHATRVEVVLNADNSVTVRDDGRGIPVDIH-KGEGISAAEVIMTQLHAGGKFDQ 59

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +L + + R N     +F+ G  ++PL+       KRGT
Sbjct: 60  NSYKVSGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAHGDAVAPLKVVGDAPGKRGT 119

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            +TF    + F +   +D A L    +  A+L+  V    S  +   EK      EE ++
Sbjct: 120 EVTFLASTETFKN-IEYDFATLEHRLRELAFLNSGVNIVLSDMRHAVEKR-----EEMFY 173

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILT 324
            GG++ +++    N+  +       ++E  G     VE A+ W +   E    + N I  
Sbjct: 174 SGGVEEFVKYLDRNKKALVPAPIMVRSEANGI---GVEAALWWNDSYHENVLCFTNNIPQ 230

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
            +GGTH +G R ALTR +  YAE    K  I++   D    
Sbjct: 231 RDGGTHLAGFRGALTRQVNGYAEANAKKEKIALTGGDCREG 271


>gi|126035212|gb|ABN72359.1| gyrase B subunit [Escherichia coli]
 gi|126035214|gb|ABN72360.1| gyrase B subunit [Escherichia coli]
 gi|126035216|gb|ABN72361.1| gyrase B subunit [Escherichia coli]
          Length = 385

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 143/396 (36%), Positives = 220/396 (55%), Gaps = 16/396 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ G
Sbjct: 60  RFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   +
Sbjct: 113 GIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRD 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK
Sbjct: 170 GGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTK 229

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTA 443
            KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A
Sbjct: 230 DKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGA 289

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A 
Sbjct: 290 LDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 349

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
            +K+ ++Q++  L+ ALGC   R +Y  + LRY  +
Sbjct: 350 FDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSI 385


>gi|148616456|gb|ABQ96971.1| GyrB [Nocardiopsis halotolerans]
          Length = 403

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 140/409 (34%), Positives = 217/409 (53%), Gaps = 10/409 (2%)

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
           +E+I+T LHAGGKFD  +Y +SGGLHGVG+SVVNALS  L V + R   ++ Q +    P
Sbjct: 1   IEVIMTVLHAGGKFDGKSYAVSGGLHGVGVSVVNALSTALDVEIRRDGHVWRQHYEMTRP 60

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
              L  + +  ++ GT+ITF PD  IF     F    L +  Q  A+L+  +      ++
Sbjct: 61  TGDL-VRGEETDETGTQITFWPDGNIFET-TSFTFETLARRMQEMAFLNKGLSITIRDER 118

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
                 G PE   F++ GGL  Y++     +    + I + + + +G    + E A+ W 
Sbjct: 119 -PEHTDGGPEVNTFHYEGGLSDYVRHINAKKEPAHASIISFEEDGEG---LSAEIAMQWN 174

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISA 366
           +     + ++ NTI T EGGTHE G R ALT  + +YA   +   ++  ++  DD+    
Sbjct: 175 QSYTSSVHTFANTINTAEGGTHEEGFRSALTTLVNRYAREQRLLREKDDNLTGDDIREGL 234

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIER 425
             I+SV + +P+F GQTKTKL + +A+  V+    +    +  +NP EA  ++ +     
Sbjct: 235 TAIISVKLADPQFEGQTKTKLGNTEAKSFVQKVTNEHLRDWFERNPGEAKDIVSKASQAA 294

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
                 R+ +    RKT +    LPGKL+DC        E++IVEGDSAGGSAK  R+  
Sbjct: 295 RARVAARQARDLTRRKTLLESTSLPGKLSDCQSTNPEECEVYIVEGDSAGGSAKGGRDPH 354

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
           +QA+LP+RGKILNV  +  ++I  N ++  ++ ALG      +    LR
Sbjct: 355 HQAILPIRGKILNVEKSRIDRILKNAEVQAIITALGTGIHEDFDASKLR 403


>gi|198250539|gb|ACH85251.1| DNA gyrase subunit B [Brevibacillus brevis]
          Length = 421

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 157/430 (36%), Positives = 232/430 (53%), Gaps = 28/430 (6%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP-------- 189
           HAGGKFD ++Y++SGGLHGVG+S VN LS  L +T+ R   +   +F RG+P        
Sbjct: 1   HAGGKFDQNSYKVSGGLHGVGVSCVNGLSKLLKLTIHRDGKVHFMEFVRGVPQNREIEMR 60

Query: 190 ----LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
               +SP++      +KRGT + F  D +IF     F    L K  +  ++L+  V    
Sbjct: 61  DGVAVSPIKVIGDT-DKRGTEVHFWADEEIF-THVEFHYEILAKRIRELSFLNNGVNIKL 118

Query: 246 SCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK--KGTHRGTVE 303
           S  +         ++E F F GG + +++   + +S++   IF    E+        TV+
Sbjct: 119 SDQR-------TGKEEVFAFEGGTRGFVEYINKAKSVLHPTIFQATGERLSDQGTNITVD 171

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISD 360
            ++ W +    ++  + N I   +GGTH +GLR A+TR I KY +  +   K  + I  D
Sbjct: 172 VSMQWNDAYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIDEQEFAKKAKVGINGD 231

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D+      +LSV + EP+F+ QTK KLVS + +  VE  +      YL + P +A  +  
Sbjct: 232 DMREGLTCVLSVKVPEPKFSSQTKDKLVSSEVRGPVEEIVAKTLADYLQEKPNDAKIICG 291

Query: 421 WVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
            ++E +  R   RK R+   RK  +  L L  KLADC +      EL+IVEGDSAGGSAK
Sbjct: 292 KIVEAARAREAARKARDLTRRKGIMDGLGLSAKLADCQEKDPALCELYIVEGDSAGGSAK 351

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
           Q R+R  QA+LPLRGK+LNV  A  EK+ +++QI  L+   G      ++  E LRY ++
Sbjct: 352 QGRDRKFQAILPLRGKVLNVEKARFEKMLSSEQITTLIATPGTSIGPDEFNVEKLRYHRI 411

Query: 539 IIMTDADVDG 548
           IIMTDADVDG
Sbjct: 412 IIMTDADVDG 421


>gi|19912103|dbj|BAB88363.1| DNA gyrase subunit B [Cytophaga sp. I-1858]
          Length = 391

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 146/395 (36%), Positives = 215/395 (54%), Gaps = 9/395 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+S VNALS+ L  TV R   I+ Q++ RG  L P++      +KRGT +TF
Sbjct: 1   VSGGLHGVGVSCVNALSEHLKATVYRGGKIYEQEYERGKTLYPVKTIGDT-DKRGTTVTF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +PDP+IF     +    L    +  A+L+  +       +   E     E E F+   GL
Sbjct: 60  KPDPEIFQQTLEYSYDTLASRLRELAFLNKGITVHLIDKRHKKEDG-SFEGETFHSEEGL 118

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
             +++     R  +  ++   + EK G     VE A+ +       + SY N I T EGG
Sbjct: 119 TEFVRYLDATREPLMKDVIAFEGEKNGIP---VEVAMVYNTSYAENLHSYVNNINTHEGG 175

Query: 329 THESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH SG R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F GQTKTK
Sbjct: 176 THLSGFRRGLTHTLKKYADESGMLDKLKFDISGDDFREGLTAIVSVKVAEPQFEGQTKTK 235

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIR 445
           L + +   +V  A+ +    YL ++P +A  +++ VI  ++ R   +K RE+  RKT + 
Sbjct: 236 LGNREVSASVSQAVSEMLTDYLEEHPDDAKTIVQKVILAAQARHAAQKAREMVQRKTVMS 295

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV  A + 
Sbjct: 296 IGGLPGKLSDCSEQDPAKCEVFLVEGDSAGGTAKQGRDRAFQAILPLRGKILNVEKAMTH 355

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           K+  N++I ++  ALG    ++   + L   K+  
Sbjct: 356 KVFENEEIKNIFTALGVTIGTEEDSKALNLSKLRY 390


>gi|307939354|gb|ADN95868.1| DNA gyrase B [Hymenobacter soli]
          Length = 412

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 149/402 (37%), Positives = 229/402 (56%), Gaps = 11/402 (2%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGG  D  +Y++SGGLHGVG+S VNALS +L VTV R+  I+ Q++  G P 
Sbjct: 1   ELIMTVLHAGGXXDKGSYKVSGGLHGVGVSCVNALSTDLKVTVRRKGHIYEQEYKIGFPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
             +++     ++ GT + F PD  IF +   +    +    +  +YL+  ++   +  +E
Sbjct: 61  YDVKEIGDT-DEHGTEVQFLPDASIFSE-TEYRYDTVASRLRDLSYLNKGIRITLTDRRE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQT-KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
             E       EEFY  GGL+ ++Q    E R  + +E    ++EK GT    VE A+ + 
Sbjct: 119 KVENG-EFRGEEFYSTGGLRDFVQYLDGEQRPSLLAEPIYVESEKGGTP---VEVALQYN 174

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISA 366
                 + SY N I T EGGTH  G R A+TR +K Y +  +   K  + I  DD     
Sbjct: 175 TSYQENVYSYVNNINTIEGGTHVGGFRSAVTRVLKNYGDKNKLFEKAKVEITGDDFREGL 234

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             ++SV + EP+F GQTKTKL + +    V + + +    YL +NP +A +++E VI  +
Sbjct: 235 TAVISVKVAEPQFEGQTKTKLGNSEVSGAVNSVVGEILTQYLDENPNQANRIMEKVILAA 294

Query: 427 EERLRRRKQREVNRKTAIRKLRL-PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
           + R+  RK +++ ++  +      PGKLADCS++     EL++VEGDSAGG+AKQ RNR+
Sbjct: 295 KARIAARKAKDMVQRKGVLSSNSLPGKLADCSESDPEICELYLVEGDSAGGTAKQGRNRA 354

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
            QA++PLRGKILNV  A   +I  N++I +++ ALG     +
Sbjct: 355 FQAIMPLRGKILNVEKAQEHRILENEEIRNMITALGVSFNER 396


>gi|84310532|gb|ABC55414.1| DNA gyrase subunit B [Bacillus subtilis]
          Length = 390

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 146/399 (36%), Positives = 217/399 (54%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            S Y+   GLHGV  SVVNALS EL VTV R   I  Q + RG+P++ LE   +  +  G
Sbjct: 1   GSGYKYPAGLHGVSASVVNALSTELDVTVHRDGKIHRQTYKRGVPVTDLEIIGET-DHTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F PDP+IF +   +D   L    +  A+L+  V       +E  E+        ++
Sbjct: 60  TTTHFVPDPEIFSETTEYDYDLLANRVRELAFLTKGVNITIEDKREGQERKNE-----YH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K+Y++    ++ ++  E    + EK G    TVE A+ + +     I S+ N I 
Sbjct: 115 YEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNIN 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G +  LTR I  YA      +    ++  DD+      I+S+   +P+F G
Sbjct: 172 TYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + +A+   +       + ++++NP  A K+++  +  +  R+  +K RE   R
Sbjct: 232 QTKTKLGNSEARTITDTLFSTAMETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 292 KSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
            A  +KI +N ++  ++ ALG      +  E  R  KV+
Sbjct: 352 KARLDKILSNNEVRSMITALGTGIGEDFNLEKARCHKVV 390


>gi|254381514|ref|ZP_04996878.1| DNA gyrase subunit B [Streptomyces sp. Mg1]
 gi|194340423|gb|EDX21389.1| DNA gyrase subunit B [Streptomyces sp. Mg1]
          Length = 387

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 106/387 (27%), Positives = 178/387 (45%), Gaps = 10/387 (2%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YDAS I++LEG E VR RPGMY+G T E+ L  +  EV D A++EV+AG A  ++++L  
Sbjct: 8   YDASHIQVLEGWEAVRKRPGMYVGSTSERGLRQMVFEVADRAVNEVLAGRAASVDITLMP 67

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G + V D+G G+P++   +      LE +LT + AG       ++++ G  GVG +VVN
Sbjct: 68  DGGVCVADDGPGVPID-ETEGAGGPGLEALLTQMQAGVG-TGGRHDVTLGFCGVGPAVVN 125

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS  +   V R+  ++ Q+++RG+  +PL +        GT I F PD  IFG    F 
Sbjct: 126 ALSCRMTAEVRREGVLWVQEYARGVAATPLTEVGTATG-SGTTIAFWPDADIFGA-TEFS 183

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L +  +  A+L+  ++   +  +   E           FPGG +  +     + +  
Sbjct: 184 FDGLEERFREVAFLNQGLEISLTDLRRPDES----RSVRLRFPGGTRDLVDFLDGHAAAS 239

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIK 343
           +         +     G +E A  WC    E            GGTH  G R  +T  + 
Sbjct: 240 TPVDTIAFECEDPRMGGVMEVAFRWCSCPGERVQSFANSRPTVGGTHAVGFRDGMTAAVT 299

Query: 344 KYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            YA              +D +      ++SV +  PEF G T+  L + + +  V  A++
Sbjct: 300 AYAREQGLLTPMDPGFDADRIGEGLTAVVSVKLDRPEFEGSTRGVLGNSEVRDCVGQAVQ 359

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEE 428
           D    +L ++   A  ++   ++ +  
Sbjct: 360 DHLGRWLKEDRERAAAVIGQSVQGARR 386


>gi|68445360|dbj|BAE03181.1| DNA gyrase subunit B [actinobacterium Aac-85]
          Length = 399

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 128/401 (31%), Positives = 210/401 (52%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  L V V  +  +++Q + RG P +PL K  +   + G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSMRLTVAVRTEGHLWTQTYLRGEPTAPLVK-GEAVAETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T + F  D ++F     ++   L +  Q  A+L+  +      ++ E  ++ G      +
Sbjct: 60  TTVAFWADDEVFETT-AYNFETLSRRFQEMAFLNRGLTIELIDERPEYKDEEGNLRSVRY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG+  +++     +  +          +    R   E ++ W  +    + ++ N I
Sbjct: 119 KYDGGISDFVRYINAAKGEMVHPQVIEFGAEDVERRIAAEVSLQWNNQYSESVYTFANGI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
            T +GGTHE G R ALT  + +YA+  Q   ++  ++  +D+    V I+SV + EP+F 
Sbjct: 179 NTPDGGTHEEGFRSALTNVVNRYAKDKQLLKEKDDNLSGEDIREGLVAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTK KL + +A+  V+    +    +  +NP E   ++   I+ +  R+  RK RE+ R
Sbjct: 239 GQTKAKLGNTEARTFVQKITYEAIADWFDRNPNEGKDIVRKSIQAATARIAARKARELTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +   + LPGKLADC        E+F+VEGDSAGGSAKQ R+   QA++P+RGKILNV
Sbjct: 299 RKGLLESMALPGKLADCQSTNPAECEIFVVEGDSAGGSAKQGRDPRTQAIMPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +K+  N ++  L+ ALG      +    LRY K+++
Sbjct: 359 EKARIDKVLQNTEVQGLISALGTGIHDDFDVSRLRYHKIVL 399


>gi|20387160|dbj|BAB91280.1| gyrase B [Streptomyces hachijoensis]
          Length = 399

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 138/401 (34%), Positives = 216/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL++ E + ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGYRWTQDYKLGVPTAPLQQNEAI-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  ++   +  + +  ++ G P   E+
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLRISLTDLRADHVDEEGKPLSVEY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTI 322
           ++ GG+  ++      +  +          +      +VE A+ W  +  E + S+ NTI
Sbjct: 119 HYEGGIVDFVTYLNSRKGELIHPTVIDVEAEDKERMLSVEIAMQWNSQYSEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I +YA   +   ++  ++  +D+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGEDIREGLTAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+  + +    +L +NP EA  ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKVVHEHLTDWLDRNPNEAADIIRKGIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  N ++  L+ A G      +    LRY K+I+
Sbjct: 359 EKARVDKILQNTEVQALISAFGTGVHEDFDISKLRYHKIIL 399


>gi|6729225|dbj|BAA89734.1| DNA gyrase subunit B [Micromonospora echinospora]
 gi|6729229|dbj|BAA89736.1| DNA gyrase subunit B [Micromonospora echinospora]
          Length = 393

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 126/399 (31%), Positives = 207/399 (51%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V + +   ++ Q+++   P    +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQQYTASKPSPLDK--GETTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + + F PDP +F     FD   + +  Q  A+L+  +      ++   ++ G   +  F 
Sbjct: 59  SAVAFWPDPDVFETV-DFDFQTIYRRLQEMAFLNRGLTIHLLDERVPEDEDGRQREVTFC 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    +++ I   +     E++G    +VE A+ W E     + ++ NTI 
Sbjct: 118 YKGGIADFVRHLNASKNPIHKTVVEFAGEEEG---MSVEIAMQWNESYGESVYTFANTIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + KY    +  K    +  +D+      I+SV +  P+F GQ
Sbjct: 175 THEGGTHEEGFRAALTSLVNKYGTEKKLLKSDEKLSGEDIREGLAAIISVKLANPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    +    +  +NP EA  ++ +           ++ ++   RK
Sbjct: 235 TKTKLGNTPVKSFVQRVCNEWLVDWFDRNPAEAKVIITKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY KV++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDMEKLRYHKVVL 393


>gi|110612663|gb|ABG78294.1| GyrB [uncultured bacterium]
          Length = 393

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 147/405 (36%), Positives = 232/405 (57%), Gaps = 17/405 (4%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD+++Y++SGGLHGVG+SVVNALS+ELH+ + R   ++ Q +  G+P +PL    +  N 
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSEELHLLIKRHGKVYEQHYHHGVPDAPLAVTGEA-NA 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT++ F+P  + F +   F    L K  +  ++L+  V      ++         +++ 
Sbjct: 60  TGTQVWFKPSAQTFTNI-EFHYDILAKRLRELSFLNSGVGILLFDER-------TNKQDT 111

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           F + GG+K +++    N++ I   +F+   EK      +VE A+ W +     I  + N 
Sbjct: 112 FRYEGGIKAFVEHLNRNKAPIIPSVFSMSGEKDNI---SVELALQWNDSYQENIFCFTNN 168

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +GLR ALTR +  Y E      K  ++   DD       +LSV + +P+F
Sbjct: 169 IPQRDGGTHLAGLRSALTRTLNNYIENEGHAKKAKVTTTGDDAREGLTAVLSVKVPDPKF 228

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REV 438
           + QTK KLVS + +  VE+ + +  + YL++NP  A  ++  +IE +  R   R+     
Sbjct: 229 SSQTKDKLVSSEVKSVVESLVAEKLNDYLLENPTVAKTIVGKIIEAARAREAARRARDMT 288

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK+A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ R+R  QA+LPL+GKILN
Sbjct: 289 RRKSALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRDRKFQAILPLKGKILN 348

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
           V  A  +K+ ++Q++  L+ ALGC     +Y  + +RY ++IIMT
Sbjct: 349 VEKARFDKMLSSQEVATLITALGCGIGSDEYDPDKIRYHRIIIMT 393


>gi|20387222|dbj|BAB91311.1| gyrase B [Streptomyces stramineus]
          Length = 399

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 135/401 (33%), Positives = 214/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL + E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVRTDGYRWTQDYKLGVPTAPLAQHEAT-DEHG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  ++   +  + +  ++ G P   ++
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLRISLTDLRADHVDEEGKPLVVDY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTI 322
           ++ GG+  +++     +  +          +      ++E A+ W  +  E + S+ NTI
Sbjct: 119 HYEGGIVDFVKYLNSRKGELIHPTVIDIEAEDKERMLSLEIAMQWNSQYSEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I +YA   +   ++  ++  +D+      I+S+ + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTGLINRYAREKKLLREKDDNLTGEDIREGLTAIISIKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+    +    +L +NP EA  ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKVAHEHLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  N ++  L+ A G      +    LRY K+I+
Sbjct: 359 EKARIDKILQNTEVQALISAFGTGVHEDFDIAKLRYHKIIL 399


>gi|24216893|ref|NP_714374.1| DNA gyrase subunit B [Leptospira interrogans serovar Lai str.
           56601]
 gi|45659167|ref|YP_003253.1| DNA gyrase subunit B [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|24198274|gb|AAN51392.1| DNA gyrase subunit B [Leptospira interrogans serovar Lai str.
           56601]
 gi|45602413|gb|AAS71890.1| DNA gyrase subunit B [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 711

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 141/730 (19%), Positives = 257/730 (35%), Gaps = 104/730 (14%)

Query: 33  PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIG----GT------------------- 69
                +    +    + + L  +E VRMR GM++G     T                   
Sbjct: 2   STDKTKVKEKSSQERNFKKLSNVEHVRMRTGMWLGQNSASTFEQHFFRKNNEGKYEIVHE 61

Query: 70  ---DEKALHHLFSEVIDNAMDEVI----------AGYANLIEVSLDGN-GFLTVVDNGRG 115
              D  A      E   NA+DE                + + V L  +   +T+ DNGRG
Sbjct: 62  ELEDVPAKLKCLDEACMNAVDEYRKNQKDKSIPEKDKMSKLIVQLSSDRKCVTIADNGRG 121

Query: 116 IPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE-ISGGLHGVGISVVNALSDELHVTVA 174
           IP          +  E +   L  G  FD+   +    G +GVGIS+V  +S+   V   
Sbjct: 122 IP---------ATNAEGVYLHLMYGENFDDHVKQDHVAGQNGVGISLVRMVSNYFKVKTV 172

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
              + F + F+    +    +  K+  +   R+    D               +      
Sbjct: 173 NNGSSFKKLFTVHDDVKKQIRSYKLSKEDTERVFLYFDEHGKFTDCNLLTKDQIDKLSPL 232

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG--------GLKTYLQTKLENRSLISSE 286
              +   +      KE        E    YF           +K YLQ        +  +
Sbjct: 233 LKKTNMQELIEKASKEDHGTSVEFELNPKYFNNLDISFNVDLMKQYLQDIAMTNPGLEVQ 292

Query: 287 IFTGKTEKKGTHRGTVEWAIAWCE-------------------------ENPEITSYCNT 321
                 ++K   +  ++   +  +                            +  ++ N+
Sbjct: 293 FVFKGKKEKYKFKKGLDEIFSHSDLVYYKMDYVAPGSASQLHLETYLVIGQNKNLTWVNS 352

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEF 379
           I   +GG+    L   +   ++K +++   ++ +      +D+       ++  +  P F
Sbjct: 353 IFAPQGGSAIEYLENRICDEVRKKSQIVALEKKLKTSSTRNDVRNCFHMYVNARLLNPRF 412

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN 439
             Q K+ L++        N          +   I+ T LLE +  + E+R + +   +  
Sbjct: 413 KSQDKSYLINDL------NEDIRNAVDKHLDKFIKKTGLLEEIKLQMEKRTQLKAFEDAQ 466

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIV-EGDSAGGSAKQARNRSNQAVLPLRGKILN 498
           +           KL   +        +  V EGDSA    + ARN     + PLRGK LN
Sbjct: 467 KGLKKASRMNIPKLMPPTGKQGDPGRVLFVAEGDSAIAGLRPARNPKLHGLFPLRGKPLN 526

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLT 557
                  K   N+++ ++V  +G     + +  D L YEKV I+TDAD DG  I SL+L+
Sbjct: 527 CKGLSIAKAIANEELKNIVAIVGLPLDQKVKSLDELNYEKVSIITDADFDGYAIRSLMLS 586

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRI-----TQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612
           FFY+   +L E   + + S PL+ +      +  ++++  D++  + +++  +K G    
Sbjct: 587 FFYEYWPELFELGFIHISSAPLYEVDVKFGDKKKETIFCIDDKDYEDLIKRVEKGGGEIT 646

Query: 613 EISRFKGLGEMLASQLKETAMDANKRT-LLRVEINKDLNSLKDTQDSINKLMGTKADERF 671
              R KGLGE    +     M       + ++ I     + K      +K     A++R 
Sbjct: 647 RKKRNKGLGE-TGKEA----MKFAVEECMTKITIGNKKEASKIQSLWFHK---DYAEQRR 698

Query: 672 KFIQERASFI 681
             I E A  +
Sbjct: 699 DAISEYAMSV 708


>gi|308153160|dbj|BAJ22169.1| DNA gyrase subunit B [Mycobacterium phlei]
          Length = 420

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 139/425 (32%), Positives = 213/425 (50%), Gaps = 36/425 (8%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y++SGGLHGVG+SVVNALS  L   + R    + Q + R +P +   K+ +  N+ GT
Sbjct: 2   GAYQVSGGLHGVGVSVVNALSTRLEADIRRDGYEWFQTYDRSVPGTL--KQGEKTNETGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------- 258
            I F PDP IF     FD   + +  Q  A+L+  +    + ++  AE            
Sbjct: 60  TIRFWPDPDIFETTT-FDFETISRRLQEMAFLNKGLTIELTDERVSAEDVVDEVVSETAE 118

Query: 259 -------------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
                              +   F++PGGL  +++     ++ I   I   + + +G   
Sbjct: 119 APKSAEEKAAESATPQQRVKHRVFHYPGGLVDFVKHINRTKNPIHPSIIDFEGKGEGH-- 176

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAIS 356
             VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +     +  +
Sbjct: 177 -EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLLKDKDPN 235

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           +  DD+      ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP EA 
Sbjct: 236 LTGDDIREGLAAVISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEQLSHWFEANPAEAK 295

Query: 417 KLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            ++   +  ++ R+  RK RE V RK+A     LPGKLADC        EL++VEGDSAG
Sbjct: 296 TVVNKAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPSKCELYVVEGDSAG 355

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           GSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY
Sbjct: 356 GSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDISKLRY 415

Query: 536 EKVII 540
            K+I+
Sbjct: 416 HKIIL 420


>gi|41387062|gb|AAS01486.1| GyrB [Bacillus sp. H-17]
          Length = 390

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 147/400 (36%), Positives = 220/400 (55%), Gaps = 14/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS EL V V R+  I  QK+ RGIP++ L+      ++ G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F+PDP+IF +   +D   L    +  A+L+  +K      +E  +K      +EF+
Sbjct: 60  TITRFKPDPEIFQETTVYDFHTLATRMRDLAFLNRNIKLTIEDKREHKQK------KEFH 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+K+Y++    ++  I  E    +  K G     VE ++ + E       S+ N I 
Sbjct: 114 YEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIH 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G + ALTR I  Y       +    ++  +D+      I+S+    P+F G
Sbjct: 171 TYEGGTHEVGFKTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNR 440
           +TKTKL + +A+   E+   + F+ +L++NP  A K++E   +        R+ +    R
Sbjct: 231 RTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAARKARELTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS      +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV 
Sbjct: 291 KSALEVSSLPGKLADCSSKEPAISEIYIVEGDSAGGSAKQGRDRHCQAILPLKGKIINVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  EKI +N ++  ++ A+G      +  E  RY KVII
Sbjct: 351 KARLEKILSNDEVRTIITAIGTNIGGDFDIEKARYHKVII 390


>gi|307939300|gb|ADN95841.1| DNA gyrase B [Hymenobacter antarcticus]
          Length = 427

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 160/430 (37%), Positives = 239/430 (55%), Gaps = 27/430 (6%)

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           +T LHAGGKFD  +Y++SGGLHGVG+  VNALS +L VTV R    + Q++  GIP   +
Sbjct: 4   MTVLHAGGKFDKGSYKVSGGLHGVGVXCVNALSTDLKVTVRRNGHKYEQEYKIGIPQYDV 63

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           ++   +  + GT + F PD  IF +   +    +    +  +YL+  ++   +  +E  E
Sbjct: 64  KEVG-LSEEHGTEVQFLPDASIFTE-TEYRYDTVAGRLRDLSYLNKGIRITLTDRREKLE 121

Query: 254 KYGIPEKEEFYFPGGLKTYLQT-KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
             G+   EEFY  GGL+ ++Q    E R  + SE    ++EK GT    VE A+ +    
Sbjct: 122 -GGVFRGEEFYSTGGLRDFVQYLDGEQRPSLLSEPIYVESEKGGTP---VEVALQYNTSY 177

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGI 369
              + SY N I T EGGTH +G R A+TR +K Y +  +   K  + I  DD       +
Sbjct: 178 QENVYSYVNNINTIEGGTHVAGFRSAVTRVLKTYGDKNKLFEKAKVEITGDDFREGLTAV 237

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           +SV ++EP+F GQTKTKL + +    V + + +    YL +NP +A +++E VI  ++ R
Sbjct: 238 ISVKVQEPQFEGQTKTKLGNSEVSGAVNSVVGEILTQYLDENPNQANRIMEKVILAAKAR 297

Query: 430 LRRRKQREVNRKTAIRKLRL-PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
           +  RK +++ ++  +      PGKLADCS++     EL++VEGDSAGG+AKQ RNR+ QA
Sbjct: 298 IAARKAKDMVQRKGVLSSNSLPGKLADCSESDPEICELYLVEGDSAGGTAKQGRNRAFQA 357

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY----------------REED 532
           +LPLRGKILNV  A   +I  N++I +++ ALG     +                     
Sbjct: 358 ILPLRGKILNVEKAQEHRILENEEIKNMITALGVTFNERKSLAFTTDDDGTESGPLNFSK 417

Query: 533 LRYEKVIIMT 542
           LRY KVIIMT
Sbjct: 418 LRYHKVIIMT 427


>gi|302122522|gb|ADK92930.1| DNA gyrase subunit B [Geobacillus subterraneus]
          Length = 394

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 147/404 (36%), Positives = 222/404 (54%), Gaps = 14/404 (3%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           F    Y++SGGLHGVG SVVNALS+ L V V R   I  QK+ RG P + L+   +  ++
Sbjct: 1   FGGGGYKVSGGLHGVGASVVNALSEWLEVYVYRDGKIHYQKYERGEPRTDLQVVGET-DR 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT   F+PDP+IF +   FD   L    +  A+L+  +K   + ++    K        
Sbjct: 60  TGTTTRFKPDPEIFTETTEFDYETLATRLRELAFLNRGLKIILTDERVDNRKNE------ 113

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           +++ GG+++Y++     R ++  E      E+ G     VE A+ + +     I S+ N 
Sbjct: 114 YFYEGGIRSYVRHLNRTREVLHEEPIYITGERDGI---AVEIALQYNDGYTSNIYSFVNN 170

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEF 379
           I T EGG HESG ++ALTR I  YA   Q  +    ++  +D+      I+S+    P+F
Sbjct: 171 IHTYEGGMHESGFKMALTRIINDYARKQQIFKDNDANLTGEDVREGLTAIVSIKHPSPQF 230

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREV 438
            GQTKTKL + DA+   +    + F+ +L+++P  A K++E  ++        ++ +   
Sbjct: 231 EGQTKTKLGNSDARTVTDAVFSEQFETFLLEHPAVARKIVEKGMMAARARLAAKKARELT 290

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK+A+    LPGKLADCS      +EL++VEGDSAGGSAKQ R+R  QA+LPLRGKI+N
Sbjct: 291 RRKSALEISNLPGKLADCSSRDPSISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKIIN 350

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           V  A  +KI +N ++  ++ ALG      +     RY KVIIMT
Sbjct: 351 VEKARLDKILSNNEVRAIITALGTGIGEDFDISKARYHKVIIMT 394


>gi|308153124|dbj|BAJ22151.1| DNA gyrase subunit B [Micromonospora fulviviridis]
          Length = 393

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 125/399 (31%), Positives = 209/399 (52%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V + +  +++ Q++    P    +   +   + G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKDGSVWRQQYHNSKPTPLEK--GETTGRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PDP +F     FD   + +  Q  A+L+  ++     ++   E+ G   +  FY
Sbjct: 59  SAVSFWPDPDVFETV-DFDFQTIYRRLQEMAFLNRALRIHLLDERVAEEEDGRQREVTFY 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    +++ I   +     E++G    +VE A+ W E     + ++ NTI 
Sbjct: 118 YEGGIADFVRHLNASKNPIHKTVVEFGAEEEG---MSVEIAMQWNESYGESVYTFANTIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQ
Sbjct: 175 THEGGTHEEGFRSALTSVVNRYGAEKKLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    +    +  +NP EA  +++            ++ ++   RK
Sbjct: 235 TKTKLGNTPVKSFVQRVCNEWLVDWFDRNPAEAKMIIQKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY K+++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDIEKLRYHKIVL 393


>gi|109287964|ref|YP_654658.1| hypothetical protein MIV086L [Invertebrate iridescent virus 3]
 gi|123862744|sp|Q196X4|TOP2_IIV3 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|106073587|gb|ABF82116.1| hypothetical protein MIV086L [Aedes taeniorhynchus iridescent
           virus]
          Length = 1113

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 117/660 (17%), Positives = 219/660 (33%), Gaps = 102/660 (15%)

Query: 61  RPGMYIGGTDEKALHHLFSEVIDNAMDEVIA----GY--ANLIEVSLD-GNGFLTVVDNG 113
           RP      T  +AL  +F EV+ NA+D +      G+     I+V +D   G  +V ++G
Sbjct: 49  RP-----TTTPEALVRIFVEVLTNAVDNIERSINGGHELCKNIKVDVDLKTGKTSVWNDG 103

Query: 114 RGIPVENH--------------------PKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           + IPV  +                     K   +    II         +DN T ++S G
Sbjct: 104 QVIPVVKNCDNGVVQPPPPTTEQDRLAYEKLNREYIHTIIFGHFRTSSNYDNETDQVS-G 162

Query: 154 LHGVGISVVNALSDELHVTVARQNTI--FSQKFSRGIPLSPLEKKEKVRNKRG-TRITFR 210
            +GVG+   N  S    V     +    FSQ++   +  S   +  K   K G T + + 
Sbjct: 163 KNGVGVKCTNIFSSWFSVVGVDPDRKLKFSQEWRSNMTKSGAPQVVKCALKTGYTLVEYV 222

Query: 211 PDPKIFG--DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           PD   F          +   K+    +         ++ ++ + +      K  +     
Sbjct: 223 PDFARFKLKSYPEDVESIFKKLVVDASAFFPNTAFFFNGERTVVKNAVAYAKLYYNLNET 282

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGG 328
               +    ++                          +          S+ N  +T  GG
Sbjct: 283 AVDSVVIDYKDSK----------------------VVVVGSATPLPPVSFVNGQITPAGG 320

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            H +     +   +         K+ +S+   D+       +   + +P+F GQ K  L 
Sbjct: 321 QHVTNWSRVIFGAL---LAALNGKKNVSLTKADIAPYFQLFIHSKVSKPKFDGQNKNCLK 377

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR 448
           S   +  ++  +      + + + I+   +        ++   R            R   
Sbjct: 378 SPKVEAHLDATILKKMLKWKIISTIQDKVVKSKEYLALKKIECR------------RTPI 425

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN--------RSNQAVLPLRGKILNVA 500
           +     D +  +   + L + EG SA   A             R+   +LPLRGK LNV 
Sbjct: 426 VKVDGYDQANRLGPDSVLIVCEGLSAKSYAVAGIQKGLFNKKGRTYFGILPLRGKFLNVK 485

Query: 501 SAGSEKIRNNQQIMDLVQA----LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556
           +    KI  N+ + D ++          R       L Y  ++I+TDAD DG HI  L+L
Sbjct: 486 NTTPLKIGQNKVVSDFIKVLNLKFNLDYRKATNYATLNYGTLLILTDADKDGIHIKGLIL 545

Query: 557 TFFYQEMYDLI-EQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEI 614
              ++    L   Q  ++ +  P+ +I     +    +DE   +    +  +        
Sbjct: 546 NLIHELFPTLFHRQGFIYSMETPIVKILHKKGQPTLFYDENSFEDWRAQHPELK----HF 601

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
             +KGLG +  + +              V  + D  +               A+ER +++
Sbjct: 602 KYYKGLGTIGPADVAAFFGS------KVVRYHYDEATDAAVNSVFKD---ENANERKEWL 652


>gi|68445342|dbj|BAE03172.1| DNA gyrase subunit B [actinobacterium Aac-26]
 gi|68445358|dbj|BAE03180.1| DNA gyrase subunit B [actinobacterium Aac-70]
          Length = 399

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 132/401 (32%), Positives = 214/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  L V V  +  +++Q + RG P +PL K  +  ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSMRLTVAVRTEGHLWTQAYLRGAPTAPLTK-GEAVSETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D ++F     ++   L +  Q  A+L+  +      ++ E  ++ G      +
Sbjct: 60  TTVTFWADDEVFETT-AYNFETLSRRFQEMAFLNRGLTIELVDERPEYKDEEGNLRSIRY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG+  +++     +  +          +    R   E A+ W  +    + ++ N I
Sbjct: 119 KYDGGISDFVRYINAAKGELVHAQVIEFGSEDVERRIAAEVALQWNNQYSESVYTFANGI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
            T +GGTHE G R ALT  + +YA+  Q   ++  ++  +D+    V I+SV + EP+F 
Sbjct: 179 NTPDGGTHEEGFRSALTNVVNRYAKDKQLLKEKDDNLSGEDIREGLVAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTK KL + +A+  V+    +    +  +NPIEA  ++   I+ +  R+  RK RE+ R
Sbjct: 239 GQTKAKLGNTEARTFVQKITYEAIADWFDRNPIEAKDIVRKSIQAATARIAARKARELTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +   + LPGKLADC        E+F+VEGDSAGGSAKQ R+   QA++P+RGKILNV
Sbjct: 299 RKGLLESMALPGKLADCQSTNPAECEIFVVEGDSAGGSAKQGRDPRTQAIMPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +K+  N ++  L+ ALG      +    LRY K+++
Sbjct: 359 EKARIDKVLQNTEVQGLISALGTGIHDDFDISKLRYHKIVL 399


>gi|189909567|gb|ACE60643.1| DNA gyrase subunit B [Bacillus subtilis]
          Length = 390

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 146/393 (37%), Positives = 216/393 (54%), Gaps = 13/393 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG SVVNALS EL VTV R   I  Q + RG+P++ LE   +  +  GT   F
Sbjct: 1   VSGGLHGVGASVVNALSTELDVTVHRDGKIHRQTYKRGVPVTDLEIIGET-DHTGTTTHF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PDP+IF +   +D   L    +  A+L+  V       +E  E+        +++ GG+
Sbjct: 60  VPDPEIFSETTEYDYDLLANRVRELAFLTKGVNITIEDKREGQERKNE-----YHYEGGI 114

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K+Y++    ++ ++  E    + EK G    TVE A+ + +     I S+ N I T EGG
Sbjct: 115 KSYVEYLNRSKEVVHEEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNINTYEGG 171

Query: 329 THESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           THE+G +  LTR I  YA      +    ++  DD+      I+S+   +P+F GQTKTK
Sbjct: 172 THEAGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTK 231

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           L + +A+   +       + ++++NP  A K+++  +  +  R+  +K RE   RK+A+ 
Sbjct: 232 LGNSEARTITDTLFSTAMETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALE 291

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +
Sbjct: 292 ISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLD 351

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538
           KI +N ++  ++ ALG      +  E  R  K 
Sbjct: 352 KILSNNEVRSMITALGTGIGEDFNLEKARTTKC 384


>gi|20387156|dbj|BAB91278.1| gyrase B [Streptomyces griseocarneus]
          Length = 399

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 136/401 (33%), Positives = 214/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL+K E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVRTDGHRWTQDYKLGVPTAPLQKNEAT-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  ++   +  + +  ++ G      +
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLRISLTDLRADHVDEEGKALTVGY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTI 322
           ++ GG+  +++     +  +          +      ++E A+ W  +  E + S+ NTI
Sbjct: 119 HYEGGIVDFVKYLNSRKGELIHPTVIDIEAEDKERMLSLEVAMQWNSQYSEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I +YA   +   ++  ++  +D+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGEDIREGLTAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+  + +    +L +NP EA  ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKVVHEHLTDWLDRNPNEAADIIRKGIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  N ++  L+ A G      +    LRY K+I+
Sbjct: 359 EKARVDKILQNTEVQALISAFGTGVHEDFDISKLRYHKIIL 399


>gi|308152531|dbj|BAJ22244.1| DNA gyrase subunit B [Arthrobacter oxydans]
          Length = 417

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 135/418 (32%), Positives = 204/418 (48%), Gaps = 23/418 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVGISVVNALS  +   V RQ  ++   F+ G        K +  ++ G
Sbjct: 1   GGGYAVSGGLHGVGISVVNALSSRVDTEVRRQGHVWRMSFADGGKPQGSLVKGEETDRTG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG-------- 256
           T  TF PDP IF     FD   L    Q  A+L+  ++   + ++  AE  G        
Sbjct: 61  TTQTFYPDPAIFEVT-EFDFETLRARFQQMAFLNKGLRITLTDERTSAEADGDADLDLDA 119

Query: 257 ---------IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAI 306
                          + +  GL  Y++     + +          E +    +  +E A+
Sbjct: 120 VVTEGEVSAEHRTVVYQYDDGLLDYVKHLNSGKKVDVVHEDVIAFETEDKDRKIALEMAM 179

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W       + +Y NTI T EGGTHE G R A+T  I +YA       ++  ++  DD+ 
Sbjct: 180 QWTNAYSESVHTYANTINTHEGGTHEEGFRAAMTSLINRYAREKGIIKEKDDNLTGDDIR 239

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                ++SV + EP+F GQTKTKL + + +  V+  + D    +L +NP  A  ++   I
Sbjct: 240 EGLTAVISVKLAEPQFEGQTKTKLGNSEVKGFVQRVVTDGLGDWLERNPGPARDVIRKAI 299

Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
             ++ R+  RK R+  R+ + +    +PGKL+DCS       E++IVEGDSAGGSAK+ R
Sbjct: 300 SAAQARMAARKARDNARRKSPLESFGMPGKLSDCSSKNPEKCEVYIVEGDSAGGSAKRGR 359

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           N   QA+LPLRGKILNV  A  +K   N ++  ++ A G      +    LRY K+++
Sbjct: 360 NPETQAILPLRGKILNVERARLDKALGNAEVQSMITAFGTGIGEDFDLSKLRYHKIVL 417


>gi|328349737|emb|CBY89176.1| GyrB protein [Flavobacterium sp. R-38420]
          Length = 398

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 152/393 (38%), Positives = 220/393 (55%), Gaps = 10/393 (2%)

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA-RQNTIFSQKFSRGIPLSPL 193
           T + AGGKFD  +Y++SGGLHGVG+SVVNALS+ L  TV      I+ Q++ +G  L P+
Sbjct: 1   TKIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGKIYEQEYEKGKALYPV 60

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           ++  +    RGT +TF PDP IF     +    L    +  ++L+  +   ++  +E  +
Sbjct: 61  KQIGETTK-RGTIVTFYPDPTIFTQTVEYSYDTLSARMRELSFLNKGITVTFTDKRE-LD 118

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
           K G    E F+   GLK Y++    NR      I    +         VE A+ +     
Sbjct: 119 KDGNFVSEVFHSDEGLKEYIRYLDSNRD---PIIAHVISMDNDKGEIPVEVALIYNTSYT 175

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGIL 370
             I SY N I T EGGTH  G R  LTR +KKYA+ +    K    I  DD       I+
Sbjct: 176 ENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGMLDKLKFDISGDDFREGLTAII 235

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV ++EP+F GQTKTKL + +    V  A+ +  ++YL +NP +A  +++ VI  ++ R 
Sbjct: 236 SVKVQEPQFEGQTKTKLGNREVVSPVSQAVSEMIENYLEENPNDARIIVQKVILAAQARH 295

Query: 431 RRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             +K RE+  RKT +    LPGKL+DCS+      E+++VEGDSAGG+AKQ R+R+ QA+
Sbjct: 296 AAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGDSAGGTAKQGRDRAFQAI 355

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           LPLRGKILNV  A   K+  N++I ++  ALG 
Sbjct: 356 LPLRGKILNVEKAMHHKVFENEEIRNIFTALGV 388


>gi|20387144|dbj|BAB91272.1| gyrase B [Streptomyces netropsis]
 gi|20387224|dbj|BAB91312.1| gyrase B [Streptomyces syringium]
 gi|308152549|dbj|BAJ22253.1| DNA gyrase subunit B [Streptomyces netropsis]
 gi|308152567|dbj|BAJ22262.1| DNA gyrase subunit B [Streptomyces syringium]
          Length = 399

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 135/401 (33%), Positives = 214/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL + E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGYRWTQDYKLGVPTAPLAQHEAT-DEHG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  ++   +  + +  ++ G P   ++
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLRISLTDTRADHVDEEGKPLAVDY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTI 322
           ++ GG+  +++     +  +          +      ++E A+ W  +  E + S+ NTI
Sbjct: 119 HYEGGIVDFVKYLNSRKGELIHPTVIDIEAEDKERMLSLEIAMQWNSQYSEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I +YA   +   ++  ++  +D+      I+S+ + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTGLINRYAREKKLLREKDDNLTGEDIREGLTAIISIKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+    +    +L +NP EA  ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKVAHEHLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  N ++  L+ A G      +    LRY K+I+
Sbjct: 359 EKARIDKILQNTEVQALISAFGTGVHEDFDISKLRYHKIIL 399


>gi|19912101|dbj|BAB88362.1| DNA gyrase subunit B [Cytophaga sp. I-1856]
          Length = 391

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 145/395 (36%), Positives = 214/395 (54%), Gaps = 9/395 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+S VNALS+ L  TV R   I+ Q++ RG  L P++      +KRGT +TF
Sbjct: 1   VSGGLHGVGVSCVNALSEHLKATVYRGGKIYEQEYERGKTLYPVKTIGDT-DKRGTTVTF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +PDP+IF     +    L    +  A+L+  +       +   E     E E F+   GL
Sbjct: 60  KPDPEIFQQTLEYSYDTLASRLRELAFLNKGITVHLIDKRHKKEDG-SFEGETFHSEEGL 118

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
             +++     R  +  ++   + EK G     VE A+ +       + SY N I T EGG
Sbjct: 119 TEFVRYLDATREPLMKDVIAFEGEKNGIP---VEVAMVYNTSYAENLHSYVNNINTHEGG 175

Query: 329 THESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH SG R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F GQ KTK
Sbjct: 176 THLSGFRRGLTHTLKKYADESGMLDKLKFDISGDDFREGLTAIVSVKVAEPQFEGQQKTK 235

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIR 445
           L + +   +V  A+ +    YL ++P +A  +++ VI  ++ R   +K RE+  RKT + 
Sbjct: 236 LGNREVSASVSQAVSEMLKDYLEEHPDDAKTIVQKVILAAQARHAAQKAREMVQRKTVMS 295

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV  A + 
Sbjct: 296 IGGLPGKLSDCSEQDPAKCEVFLVEGDSAGGTAKQGRDRAFQAILPLRGKILNVEKAMTH 355

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           K+  N++I ++  ALG    ++   + L   K+  
Sbjct: 356 KVFENEEIKNIFTALGVTIGTEEDSKALNISKLRY 390


>gi|6729317|dbj|BAA89780.1| DNA gyrase subunit B [Micromonospora echinospora]
          Length = 393

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 126/399 (31%), Positives = 207/399 (51%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V + +   ++ Q+++   P    +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQQYTASKPGPLDK--GETTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + + F PDP +F     FD   + +  Q  A+L+  +      ++   ++ G   +  F 
Sbjct: 59  SAVAFWPDPDVFETV-DFDFQTIYRRLQEMAFLNRGLTIHLLDERVPEDEDGRQREVTFC 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    +++ I   +     E++G    +VE A+ W E     + ++ NTI 
Sbjct: 118 YKGGIADFVRHLNASKNPIHKTVVEFAGEEEG---MSVEIAMQWNESYGESVYTFANTIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + KY    +  K    +  +D+      I+SV +  P+F GQ
Sbjct: 175 THEGGTHEEGFRAALTSLVNKYGTEKKLLKSDEKLSGEDIREGLAAIISVKLANPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    +    +  +NP EA  ++ +           ++ ++   RK
Sbjct: 235 TKTKLGNTPVKSFVQRVCNEWLVDWFDRNPAEAKVIITKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY KV++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDMEKLRYHKVVL 393


>gi|108946656|gb|ABG23676.1| gyrase subunit B [Leptospira noguchii]
 gi|108946658|gb|ABG23677.1| gyrase subunit B [Leptospira noguchii]
 gi|108946662|gb|ABG23679.1| gyrase subunit B [Leptospira noguchii]
 gi|108946664|gb|ABG23680.1| gyrase subunit B [Leptospira noguchii]
          Length = 137

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 75/138 (54%), Positives = 102/138 (73%), Gaps = 1/138 (0%)

Query: 51  ILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVV 110
           ILEGLE VR RPGMYIG  DE  LH +  EV+DN++DE +AG+   I +S+  +  + V 
Sbjct: 1   ILEGLEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEIIISILPDNIIEVK 60

Query: 111 DNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELH 170
           DNGRGIPV+ HP     ST+E+++T LHAGGKF+N  Y++SGGLHGVG+SVVNALS+ L 
Sbjct: 61  DNGRGIPVDIHP-DKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYLE 119

Query: 171 VTVARQNTIFSQKFSRGI 188
           V V ++  I++QK+ +G+
Sbjct: 120 VEVHQKGKIYTQKYQKGV 137


>gi|20387130|dbj|BAB91265.1| gyrase B [Streptomyces blastmyceticus]
          Length = 399

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 138/401 (34%), Positives = 215/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL+K E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGYRWTQDYKLGVPTAPLQKNEAT-DESG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  ++   +  + +  ++ G     E+
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLRISLTDLRVDHVDEEGKALTVEY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTI 322
           ++ GG+  +++     +  +          +      +VE A+ W  +  E + S+ NTI
Sbjct: 119 HYEGGIVDFVKYLNSRKGELIHPTVIDIEAEDKERMLSVEIAMQWNSQYSEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I +YA   +   ++  ++  +D+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGEDIREGLTAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+  + +    +L +NP EA  ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKVVHEHLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  N ++  L+ A G      +    LRY K+I+
Sbjct: 359 EKARIDKILQNTEVQALISAFGTGVHEDFDIAKLRYHKIIL 399


>gi|86169575|gb|ABC87027.1| DNA gyrase subunit B [Weissella paramesenteroides]
          Length = 394

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 145/402 (36%), Positives = 212/402 (52%), Gaps = 14/402 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK--EKVRNK 202
              Y++SGGLHGVG SVVNALS  L V V R    F+  F RG   + + +   +     
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTNLDVLVVRDGKGFAMDFERGHVKTEMHEIAIDDKPVS 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
           RGT + F PDP IF +   FD   L+   +  A+LS  ++   +  +        P  E 
Sbjct: 61  RGTIVHFAPDPDIFRETTVFDYKTLMNRVRELAFLSKGLRISITDMR-----PEEPVVES 115

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNT 321
           F++ GG+K Y+     N+ +I +E    +  +       VE ++ + ++      S+ N 
Sbjct: 116 FHYEGGIKEYVDFLNVNKDVIFNEPIYVEGMENDI---DVEVSLQYTDDFHSNLLSFTNN 172

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEF 379
           I T EGGTHE+G + ALTR I  YA   +  +        DD+      I+SV   +P+F
Sbjct: 173 IHTYEGGTHETGFKSALTRVINDYARKNKILKDNDDPLSGDDVREGLTAIVSVKHPDPQF 232

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-V 438
            GQTKTKL + DA+  V+    + F  ++++NP  A +++E  I   + R+  ++ RE  
Sbjct: 233 EGQTKTKLGNSDARTAVDRMFSETFARFMMENPTTAKQIVEKGILAGKARMAAKRAREAT 292

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            +K+ +    LPGKLAD +      +ELFIVEGDSAGGSAKQ R R  QA+LP+RGKILN
Sbjct: 293 RKKSGLEIANLPGKLADNTSKDPEISELFIVEGDSAGGSAKQGRERLTQAILPIRGKILN 352

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           V  A  EKI  N +I  L  A+G    + +     +Y K+II
Sbjct: 353 VEKASMEKILGNDEIRSLFTAMGTGFGTDFDVTKAKYHKLII 394


>gi|324039428|dbj|BAJ78467.1| DNA gyrase subunit B [Alcanivorax sp. Shm-2]
          Length = 393

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 152/405 (37%), Positives = 227/405 (56%), Gaps = 18/405 (4%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D++TY++SGGLHGVG+SVVNALS+EL +T+ R   +  Q +  G+P +PLE      +  
Sbjct: 1   DDNTYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYHHGVPANPLEVVG-TTDSS 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + FRP P+ F +   F    L K  +  ++L+  V+     ++   E       + F
Sbjct: 60  GTAVHFRPSPETFSNI-KFHYDILAKRLRELSFLNSGVRIHLMDERSGDE-------DVF 111

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
            + GGL  ++     N++ ++       + E+ G     VE A+ W +     I  + N 
Sbjct: 112 EYEGGLSAFVSYLNTNKTALNQVFHFNFEREEDGI---AVEVAMQWNDSYQENIFCFTNN 168

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R ALTR +  Y +      K   +   DD       ++SV + +P+F
Sbjct: 169 IPQRDGGTHLAGFRAALTRTLNSYMDKEGFLKKEKANPSGDDAREGLTAVISVKVPDPKF 228

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REV 438
           + QTK KLVS + +  VE  + D F  YL++NP EA  +++ +I+ +  R   RK     
Sbjct: 229 SSQTKDKLVSSEVKSAVEQTMGDLFQDYLLENPGEARSIVQKIIDAARARDAARKAREMT 288

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC Q     +EL+IVEGDSAGGSAKQ R+R NQA+LPL+GKILN
Sbjct: 289 RRKGALDIAGLPGKLADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILN 348

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
           V  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY ++IIMT
Sbjct: 349 VEKARFDKMLSSQEVGTLITALGCGIGRDEYNIDKLRYHRIIIMT 393


>gi|198042718|gb|ACH81184.1| GyrB [Vibrio sp. UST040801-006]
          Length = 377

 Score =  220 bits (561), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 143/387 (36%), Positives = 220/387 (56%), Gaps = 14/387 (3%)

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           +T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL
Sbjct: 1   MTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPL 60

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
                  +K GT+I F P  + F +   F    L K  +  ++L+  V    S ++E   
Sbjct: 61  AVVGDT-DKTGTQIRFWPSSETFTN-TEFHYDILAKRLRELSFLNSGVSIKLSDERE--- 115

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
                + + F + GG++ ++Q    N++ I  +IF    E++     +VE A+ W +   
Sbjct: 116 ---EDKHDHFMYEGGIQAFVQHLNTNKTPIIEKIFHFNFERED--GISVEVAMQWNDGFQ 170

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
             I  + N I   +GGTH +G R ALTR +  + +      K   +   DD       ++
Sbjct: 171 ENIFCFTNNIPQRDGGTHLAGFRAALTRTLNTFMDKEGFSEKAKTATSGDDAREGLTAVV 230

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEER 429
           SV + +P+F+ QTK KLVS + +  VE+A+ +    +LV+NP EA  +   +I+      
Sbjct: 231 SVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARARE 290

Query: 430 LRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+
Sbjct: 291 AARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAI 350

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDL 516
           LPL+GKILNV  A  +K+ ++Q++  L
Sbjct: 351 LPLKGKILNVEKARFDKMLSSQEVATL 377


>gi|20387230|dbj|BAB91315.1| gyrase B [Streptomyces tropicalensis]
          Length = 399

 Score =  220 bits (561), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 136/401 (33%), Positives = 214/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL+K E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVRTDGYRWTQDYKLGVPTAPLQKNEAT-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  ++   +  + +  ++ G      +
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLRISLTDLRADHVDEEGKALTVGY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTI 322
           ++ GG+  +++     +  +          +      ++E A+ W  +  E + S+ NTI
Sbjct: 119 HYEGGIVDFVKYLNSRKGELIHPTVIDIEAEDKERMLSLEVAMQWNSQYSEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I +YA   +   ++  ++  +D+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGEDIREGLTAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+  + +    +L +NP EA  ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKVVHEHLTDWLDRNPNEAADIIRKGIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  N ++  L+ A G      +    LRY K+I+
Sbjct: 359 EKARVDKILQNTEVQALISAFGTGVHEDFDISKLRYHKIIL 399


>gi|33590354|gb|AAQ22717.1| DNA gyrase subunit B [Photorhabdus sp. Q614]
          Length = 385

 Score =  220 bits (561), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 147/396 (37%), Positives = 219/396 (55%), Gaps = 16/396 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS++L + + R   +  Q +  G+P SPL+   +   + GTR+ F 
Sbjct: 1   SGGLHGVGVSVVNALSEKLELIIRRDGKVHEQTYHLGVPQSPLKVVGET-EQTGTRVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P    F D   F    L K  +  ++L+  V       +   E       + F++ GG+K
Sbjct: 60  PSMDTFRDNTEFQHDILAKRLRELSFLNSGVSIRLIDKRTNTE-------DHFHYEGGIK 112

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I   +F   TEK G     VE ++ W +     I  + N I   +GGT
Sbjct: 113 AFVEFLNKNKTPIHPNVFYFSTEKDGI---GVEISMQWNDGFQENIYCFTNNIPQRDGGT 169

Query: 330 HESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R A+TR +  Y +      K  +S   DD     V ++SV + +P+F+ QTK KL
Sbjct: 170 HLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKL 229

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRK 446
           VS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+  
Sbjct: 230 VSSEVKTAVETLMNEKLVEYLLENPNDAKTVVGKIIDAARAREAARKAREMTRRKGALDL 289

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 290 AGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 349

Query: 507 IRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIM 541
           + ++Q++  L+ ALGC   R +Y  + LRY  +IIM
Sbjct: 350 MLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIM 385


>gi|329582021|emb|CCA63154.1| DNA gyrase B subunit [Flavobacterium frigoris]
          Length = 391

 Score =  220 bits (561), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 153/392 (39%), Positives = 219/392 (55%), Gaps = 10/392 (2%)

Query: 136 TLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA-RQNTIFSQKFSRGIPLSPLE 194
            + AGGKFD  +Y++SGGLHGVG+SVVNALS+ L  TV      ++ Q++ +G  L P++
Sbjct: 1   KIGAGGKFDKDSYKVSGGLHGVGVSVVNALSNHLTATVHSSDGKVYQQEYEKGKALYPVK 60

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
           +  +    RGT +TF PD  IF     F    L    +  +YL+  +   ++  +E  +K
Sbjct: 61  QIGETTK-RGTIVTFYPDETIFTQTTEFSYDTLSARMRELSYLNKGITITFTDKRE-LDK 118

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313
            G    E F+   GLK Y++    NR  I + + +   EK       VE A+ +      
Sbjct: 119 DGNFVSEIFHSDEGLKEYIRYLDGNREPIIAHVISMDNEK---GEIPVEVALIYNTSYTE 175

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILS 371
            I SY N I T EGGTH  G R  LTR +KKYA+ +    K    I  DD       I+S
Sbjct: 176 NIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGMLDKLKFDISGDDFREGLTAIIS 235

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V + EP+F GQTKTKL + +    V  A+ D  + YL +NP +A  +++ VI  ++ R  
Sbjct: 236 VKVAEPQFEGQTKTKLGNREVVSPVSQAVGDMIEAYLEENPNDARIIVQKVILAAQARHA 295

Query: 432 RRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +K RE+  RK  +    LPGKL+DCS+      E+++VEGDSAGG+AKQ R+R+ QA+L
Sbjct: 296 AKKAREMVQRKPVMGGGGLPGKLSDCSEQDPTKCEVYLVEGDSAGGTAKQGRDRAFQAIL 355

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           PLRGKILNV  A   K+  N++I ++  ALG 
Sbjct: 356 PLRGKILNVEKAMHHKVFENEEIRNIFTALGV 387


>gi|119226142|dbj|BAF41050.1| DNA gyrase subunit B [Arthrobacter globiformis]
          Length = 418

 Score =  220 bits (561), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 134/419 (31%), Positives = 204/419 (48%), Gaps = 24/419 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVGISVVNALS  ++  V RQ  ++   F+ G        + +   + G
Sbjct: 1   GGGYAVSGGLHGVGISVVNALSTRVNTEVRRQGHVWRMSFADGGKPQGALVQGEETAETG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA------------ 252
           T  TF PDP IF     FD   L    Q  A+L+  +K   + +++ A            
Sbjct: 61  TTQTFYPDPSIFEST-EFDFETLRARFQQMAFLNKGLKITLTDERQTAAGTDDAGDLDLD 119

Query: 253 ------EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKGTHRGTVEWA 305
                 E         + +  GL  Y++    ++ +          E +       VE A
Sbjct: 120 GVLTEGEVLAEHRTVVYQYNDGLLDYVKHLNSSKKVDVVHEDVIAFETEDTERHIAVEMA 179

Query: 306 IAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDL 362
           + W       + +Y NTI T EGGTHE G R A+T  I +YA       ++  ++  DD+
Sbjct: 180 MQWTTAYSESVHTYANTINTHEGGTHEEGFRAAMTSLINRYAREKAIIKEKDENLTGDDI 239

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
                 ++SV + EP+F GQTKTKL + + +  V+  + D    +L +NP  A  ++   
Sbjct: 240 REGLTAVISVKLSEPQFEGQTKTKLGNSEVKGFVQRVVTDQLGDWLERNPGPAKDVIRKA 299

Query: 423 IERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
           I  ++ R+  RK R+  R+ + +    +PGKL+DCS       E+++VEGDSAGGSAK+ 
Sbjct: 300 ISAAQARMAARKARDNARRKSPLESFGMPGKLSDCSSKDPSKCEVYLVEGDSAGGSAKRG 359

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           RN   QA+LPLRGKILNV  A  +K   N ++  ++ A G      +    LRY K+++
Sbjct: 360 RNPETQAILPLRGKILNVERARLDKALGNNEVQSMITAFGTGIGEDFDLSKLRYHKIVL 418


>gi|148971361|gb|ABR20218.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 432

 Score =  220 bits (561), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 167/440 (37%), Positives = 234/440 (53%), Gaps = 23/440 (5%)

Query: 131 EIILTTLHAGGKFDNST----YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           E+I+T LHAGGKFD  +    Y  SGGLHGVG+SV NALS  L VTV R+  +    F  
Sbjct: 1   EVIMTVLHAGGKFDKKSGQGAYAFSGGLHGVGVSVTNALSRRLEVTVKREGKVHFMTFGD 60

Query: 187 GIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
           G  + PL  +        GTR+   PDP+ F +        L +  +SKA L   V    
Sbjct: 61  GFVIEPLAVQGTCGARNTGTRVRVWPDPRYFDEPQINLIE-LERGLRSKAVLLPGVSV-- 117

Query: 246 SCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS----EIFTGKTEKKGTHRGT 301
              +   E  G   ++ +++PGGL+ YL  +L    L+      + F G  E      G 
Sbjct: 118 ---RLRKEGDGRTLEQTWHYPGGLEQYLTERLGEDPLLIPVFTGDRFFGVEEGDSFAPGE 174

Query: 302 -VEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISII 358
              WA +W E       S+ N I T  GGTHE+GLR  L   +K + E      R + + 
Sbjct: 175 GASWAFSWHETRSLQGESFVNLIPTPLGGTHEAGLRTGLFEALKSFIEHHGLLPRGVRLQ 234

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            +D+      ILS+ + +P+F GQTK KL S +A + V   +RDPF+H+L Q+      L
Sbjct: 235 LEDVSARLQFILSIRMLDPQFQGQTKDKLTSREALKLVSTLVRDPFEHWLNQHVEHGKAL 294

Query: 419 LEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
           ++ VI ++  R++  ++ E  + + +  L  PGKL DC        ELF+VEGDSAGGSA
Sbjct: 295 VDLVIRQAMARMKSGQKIEKRKSSGVAVL--PGKLTDCESERIDERELFLVEGDSAGGSA 352

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL---RY 535
           K ARN+  QA+LPLRGK+LN       ++  N +I D+  ALG     +    DL   RY
Sbjct: 353 KMARNKLTQAILPLRGKVLNSFEVEQGRLFANTEIHDIAVALGIDPHGRGEPVDLSQRRY 412

Query: 536 EKVIIMTDADVDGAHIASLL 555
           +++IIMTDADVDG+HI +LL
Sbjct: 413 DRIIIMTDADVDGSHIRTLL 432


>gi|126035288|gb|ABN72397.1| gyrase B subunit [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
          Length = 385

 Score =  220 bits (561), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 143/396 (36%), Positives = 220/396 (55%), Gaps = 16/396 (4%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P +PL       +K GT + 
Sbjct: 1   KVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVR 59

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ GG
Sbjct: 60  FWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGG 112

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           +K +++   +N++ I   IF   TEK G     +E A+ W +     I  + N I   +G
Sbjct: 113 IKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GIEVALQWNDGFQENIYCFTNNIPQRDG 169

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK 
Sbjct: 170 GTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKD 229

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAI 444
           KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+
Sbjct: 230 KLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGAL 289

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  
Sbjct: 290 DLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARF 349

Query: 505 EKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
           +K+ ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 350 DKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSII 385


>gi|18147179|dbj|BAB83070.1| DNA gyrase subunit B [Alcanivorax sp. Cro-4]
          Length = 393

 Score =  220 bits (561), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 153/405 (37%), Positives = 227/405 (56%), Gaps = 18/405 (4%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D++TY++SGGLHGVG+SVVNALS+EL +T+ R   +  Q ++ G+P  PLE      +  
Sbjct: 1   DDNTYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYNHGVPAKPLEVVG-TTDSS 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + FRP P+ F +   F    L K  +  ++L+  V+     ++   E       + F
Sbjct: 60  GTAVHFRPSPETFSNI-KFHYDILAKRLRELSFLNSGVRIHLMDERSGDE-------DVF 111

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
            + GGL  ++     N++ ++       + E+ G     VE A+ W +     I  + N 
Sbjct: 112 EYEGGLSAFVSYLNTNKTALNQVFHFNFEREEDGI---AVEVAMQWNDSYQENIFCFTNN 168

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R ALTR +  Y +      K   +   DD       ++SV + +P+F
Sbjct: 169 IPQRDGGTHLAGFRAALTRTLNSYMDKEGFLKKEKANPSGDDAREGLTAVISVKVPDPKF 228

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REV 438
           + QTK KLVS + +  VE  + D F  YL++NP EA  +++ +I+ +  R   RK     
Sbjct: 229 SSQTKDKLVSSEVKSAVEQTMGDLFQDYLLENPGEARSIVQKIIDAARARDAARKAREMT 288

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC Q     +EL+IVEGDSAGGSAKQ R+R NQA+LPL+GKILN
Sbjct: 289 RRKGALDIAGLPGKLADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILN 348

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
           V  A  +K+ ++Q++  L+ ALGC   R +Y  E LRY ++IIMT
Sbjct: 349 VEKARFDKMLSSQEVGTLITALGCGIGRDEYNIEKLRYHRIIIMT 393


>gi|284484537|gb|ADB90399.1| DNA gyrase subunit B [Shewanella sp. udc329]
          Length = 395

 Score =  220 bits (560), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 150/406 (36%), Positives = 228/406 (56%), Gaps = 16/406 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS++L +T+ R    + Q +  G P+ P+++        
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKLKLTIRRNGKTYEQYYRHGNPVEPIKEIG-TSEHT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT I F P  + F D   F    L K  +  ++L+  V      +++  +       + F
Sbjct: 60  GTEIRFWPSKETFTDV-EFHYEILAKRVRELSFLNSGVGIRLRDERDHKD-------DFF 111

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           ++ GG+  +++    N++ ++ EIF    E+      TVE A+ W +     I  + N I
Sbjct: 112 HYEGGIHAFVEYLNHNKTAVNKEIFHFSQERDD--GITVEVAMQWNDGFQENILCFTNNI 169

Query: 323 LTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  Y E      K   S   DD       ++SV + +P+F+
Sbjct: 170 PQRDGGTHLAGFRAALTRNLNNYMEAEGYNKKNKTSATGDDAREGLTAVISVKVPDPKFS 229

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE  + +  + YL++NP EA  ++  +I+ +  R   RK R    
Sbjct: 230 SQTKDKLVSSEVKTAVEQTMAEKLNDYLLENPNEARLVVSKIIDAARAREAARKAREMTR 289

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 290 RKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 349

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
             A  +K+ ++Q++  L+ ALGC   R +Y  +  RY  +IIMTDA
Sbjct: 350 EKARFDKMLSSQEVASLITALGCGIGRDEYNPDKTRYHNIIIMTDA 395


>gi|33590326|gb|AAQ22703.1| DNA gyrase subunit B [Photorhabdus asymbiotica subsp. australis]
          Length = 387

 Score =  220 bits (560), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 144/398 (36%), Positives = 218/398 (54%), Gaps = 16/398 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS++L + + R   +  Q +  G+P SPL+   +   + GTR+
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKIVGET-EQTGTRV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P    F +   F    L K  +  ++L+  V       +   E       + F++ G
Sbjct: 60  RFWPSMDTFRNNTKFQHDILAKRLRELSFLNSGVSIRLIDKRTNTE-------DHFHYKG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K +++   +N++ I   +F   TEK G     VE ++ W +     I  + N I   +
Sbjct: 113 GIKAFVEFLNKNQTPIYPNVFYFLTEKDGI---GVEISMQWNDGFQENIYCFTNNIPQRD 169

Query: 327 GGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH  G R A+TR +  Y +      K  +S   DD     V ++SV + +P+F+ QTK
Sbjct: 170 GGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTK 229

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTA 443
            KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A
Sbjct: 230 DKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVGKIIDAARAREAARKAREMTRRKGA 289

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A 
Sbjct: 290 LDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 349

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            +K+ ++Q++  L+ ALGC   R  Y  + LRY  +  
Sbjct: 350 FDKMLSSQEVATLITALGCGIGRDAYNPDKLRYHSIYY 387


>gi|324039456|dbj|BAJ78481.1| DNA gyrase subunit B [Alcanivorax sp. Wf-3]
          Length = 412

 Score =  220 bits (560), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 152/406 (37%), Positives = 227/406 (55%), Gaps = 18/406 (4%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
            D++TY++SGGLHGVG+SVVNALS+EL +T+ R   +  Q +  G+P +PLE      + 
Sbjct: 19  LDDNTYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYHHGVPANPLEVVG-TTDS 77

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT + FRP P+ F +   F    L K  +  ++L+  V+     ++   E       + 
Sbjct: 78  SGTAVHFRPSPETFSNI-KFHYDILAKRLRELSFLNSGVRIHLMDERSGDE-------DV 129

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
           F + GGL  ++     N++ ++       + E+ G     VE A+ W +     I  + N
Sbjct: 130 FEYEGGLSAFVSYLNTNKTALNQVFHFNYEREEDGI---AVEVAMQWNDSYQESIFCFTN 186

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I   +GGTH +G R ALTR +  Y +      K   +   DD       ++SV + +P+
Sbjct: 187 NIPQRDGGTHLAGFRAALTRTLNSYMDKEGFLKKEKANPSGDDAREGLTAVISVKVPDPK 246

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-RE 437
           F+ QTK KLVS + +  VE  + D F  YL++NP EA  +++ +I+ +  R   RK    
Sbjct: 247 FSSQTKDKLVSSEVKSAVEQTMGDLFQDYLLENPTEARSIVQKIIDAARARDAARKAREM 306

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
             RK A+    LPGKLADC Q     +EL+IVEGDSAGGSAKQ R+R NQA+LPL+GKIL
Sbjct: 307 TRRKGALDIAGLPGKLADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKIL 366

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
           NV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY ++IIMT
Sbjct: 367 NVEKARFDKMLSSQEVGTLITALGCGIGRDEYNIDKLRYHRIIIMT 412


>gi|2196842|gb|AAB80838.1| DNA gyrase beta-subunit [Shewanella sp. MR-4]
          Length = 419

 Score =  220 bits (560), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 151/430 (35%), Positives = 234/430 (54%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T L    KF+  T ++      VG+ VVNALS +L +T+ R+  +  Q ++ G+P 
Sbjct: 1   EVIMTVLCRVCKFEVLTNDVYVDRPRVGVPVVNALSKKLQLTIRREGKVHEQFYTHGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            P++         GT I F P  + F D   F    L K  +  ++L+  V      +++
Sbjct: 61  EPIKVIGDATK-TGTEIRFWPSEQTFSDV-EFHFEILAKRVRELSFLNSGVGIRLVDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + E F + GG+  ++     N++ ++ E+F    E++     TVE A+ W +
Sbjct: 119 N-------KNEFFKYEGGISAFVDYLNRNKTPVNKEVFHFMQERED--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R ALTR +  Y E      K   +   DD      
Sbjct: 170 GYQESIFCFTNNIPQRDGGTHLAGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            ++SV + +P+F+ QTK KLVS + +  VE  + +  + YL++NP +A  ++  +++ + 
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSNEVKAAVEQTMGEKLNDYLLENPADAKLIVGKIVDAAR 289

Query: 428 ERLRRRKQREVN-RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK RE+  RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARKAREMTLRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           QA+LPL+GKILNV  A  + + ++Q++  L+ ALGC      Y  +  RY  V++MTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDXMLSSQEVATLITALGCGIGDVVYNPDKTRYNYVVVMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHILTLL 419


>gi|19912111|dbj|BAB88367.1| DNA gyrase subunit B [Cytophaga sp. MBIC01485]
          Length = 391

 Score =  220 bits (560), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 148/395 (37%), Positives = 218/395 (55%), Gaps = 9/395 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+S VNALSD L  TV R   I+ Q++ RG  + P++      +KRGT +TF
Sbjct: 1   VSGGLHGVGVSCVNALSDHLKATVYRDGKIWEQEYERGKAMYPVKAIGDT-DKRGTDVTF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD  IF     F    L    +  A+L+  +K   +  +   E+      + F    GL
Sbjct: 60  LPDRSIFTQTTEFSYETLANRLRELAFLNKGIKIILTDKRHKDEEG-NFVTDVFQSEEGL 118

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K +++   + R  I +++ + + EK G     VE A+ + +     + SY N I T EGG
Sbjct: 119 KEFIRFLDDTRQPIIADVISMEGEKNGIP---VEVAMIYNDSYAENLHSYVNNINTHEGG 175

Query: 329 THESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R  LT  +KKYA+ +    K    I  DD       I+SV ++EP+F GQTKTK
Sbjct: 176 THLAGFRRGLTSTLKKYADASGLLDKLKFDIAGDDFREGLTAIISVKVQEPQFEGQTKTK 235

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIR 445
           L + +    V  A+    + YL +NP +A  +++ VI  ++ R   RK RE+  RKT + 
Sbjct: 236 LGNREVTSAVSQAVSQMLEAYLEENPNDAKTIVQKVILAAQARHAARKAREMVQRKTVMS 295

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R  QA++PLRGKILNV  A + 
Sbjct: 296 GGGLPGKLSDCSETDPTLCEVFLVEGDSAGGTAKQGRDREFQAIMPLRGKILNVEKAMTH 355

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           K+  N++I ++  ALG    ++   + L  EK+  
Sbjct: 356 KVFENEEIRNIYTALGVTIGTEEDSKALNLEKLRY 390


>gi|302122530|gb|ADK92934.1| DNA gyrase subunit B [Geobacillus subterraneus]
          Length = 394

 Score =  220 bits (560), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 152/404 (37%), Positives = 225/404 (55%), Gaps = 14/404 (3%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           F    Y++SGGLHGVG SVVNALS+ L V V R   I  QK+ RG P + L+   +  ++
Sbjct: 1   FGGGGYKVSGGLHGVGASVVNALSEWLEVYVYRDGKIHYQKYERGEPRTDLQVVGET-DR 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT   F+PDP+IF +   FD   L    +  A+L+  +K   + ++    K        
Sbjct: 60  TGTTTRFKPDPEIFTETTEFDYETLATRLRELAFLNRGLKIILTDERVDNRKNE------ 113

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           +++ GG+++Y++     R ++  E      E+ G     VE A+ + +     I S+ N 
Sbjct: 114 YFYEGGIRSYVRHLNRTREVLHEEPIYITGERDGI---AVEIALQYNDGYTSNIYSFVNN 170

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEF 379
           I T EGG HESG ++ALTR I  YA   Q  +    ++  +D+      I+S+    P+F
Sbjct: 171 IHTYEGGMHESGFKMALTRIINDYARKQQIFKDNDANLTGEDVREGLTAIVSIKHPSPQF 230

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-V 438
            GQTKTKL + DA+   +    + F+ +L+++P  A K++E  +  +  RL  +K RE  
Sbjct: 231 EGQTKTKLGNSDARTVTDAVFSEQFETFLLEHPAVARKIVEKGMXAARARLAAKKARELT 290

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK+A+    LPGKLADCS      +EL++VEGDSAGGSAKQ R+R  QA+LPLRGKI+N
Sbjct: 291 RRKSALEISNLPGKLADCSSRDPSISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKIIN 350

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           V  A  +KI +N ++  ++ ALG      +     RY KVIIMT
Sbjct: 351 VEKARLDKILSNNEVRAIITALGTGIGEDFDISKARYHKVIIMT 394


>gi|211927067|dbj|BAG82786.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 390

 Score =  220 bits (560), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 140/401 (34%), Positives = 217/401 (54%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS++L + + R   +  Q +  G P   L    +  +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQIYRHGEPQDRLTVVGET-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           TR+ F P    F  +  F    L K  +  ++L+  V       ++  E       + F+
Sbjct: 60  TRVRFWPSMDTFKGETEFQYDILAKRLRELSFLNSGVSIRLIDKRDGKE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++     ++ I + +F   TEK       VE ++ W +     +  + N I 
Sbjct: 113 YEGGIKAFVEYLSRAKTSIHNNVFYFSTEKDDI---GVEISMQWNDSFQENVYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GG H +G R A+TR +  Y E      K  +S   DD     V ++SV + +P+F+ 
Sbjct: 170 QRDGGAHLAGFRAAMTRTLNSYIEKEGLNKKSKVSTTGDDAREGLVAVISVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL +NP +   ++  +I+ +  R   R+ R    R
Sbjct: 230 QTKDKLVSSEVKTAVETLMNEKLSEYLDENPNDTKIIVGKIIDAARAREAARRAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPAFSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+  +Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 KARFDKMLASQEVATLITALGCGIGRDEYNPDKLRYHSIII 390


>gi|126035336|gb|ABN72421.1| gyrase B subunit [Shigella flexneri]
          Length = 385

 Score =  220 bits (560), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 143/395 (36%), Positives = 220/395 (55%), Gaps = 16/395 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTM 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ 
Sbjct: 60  VRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYE 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   
Sbjct: 113 GGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQR 169

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QT
Sbjct: 170 DGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQT 229

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKT 442
           K KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK 
Sbjct: 230 KDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKG 289

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 ALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 349

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYE 536
             +K+ ++Q++  L+ ALGC   R +Y  + LRY 
Sbjct: 350 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYH 384


>gi|6729215|dbj|BAA89729.1| DNA gyrase subunit B [Micromonospora echinospora]
          Length = 391

 Score =  220 bits (560), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 126/397 (31%), Positives = 207/397 (52%), Gaps = 9/397 (2%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
            Y +SGGLHGVG+SVVNALS  + V + +   ++ Q+++   P    +   +  ++ G+ 
Sbjct: 1   AYAVSGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQQYTASKPSPLDK--GETTDRTGSA 58

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F PDP +F     FD   + +  Q  A+L+  +      ++   ++ G   +  F + 
Sbjct: 59  VAFWPDPDVFETV-DFDFQTIYRRLQEMAFLNRGLTIHLLDERVPEDEDGRQREVTFCYK 117

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+  +++    +++ I   +     E++G    +VE A+ W E     + ++ NTI T 
Sbjct: 118 GGIADFVRHLNASKNPIHKTVVEFAGEEEG---MSVEIAMQWNESYGESVYTFANTINTH 174

Query: 326 EGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           EGGTHE G R ALT  + KY    +  K    +  +D+      I+SV +  P+F GQTK
Sbjct: 175 EGGTHEEGFRAALTSLVNKYGTEKKLLKSDEKLSGEDIREGLAAIISVKLANPQFEGQTK 234

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTA 443
           TKL +   +  V+    +    +  +NP EA  ++ +           ++ ++   RK+ 
Sbjct: 235 TKLGNTPVKSFVQRVCNEWLVDWFDRNPAEAKVIITKASQAARARIAAQQARKLARRKSL 294

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A 
Sbjct: 295 LESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKAR 354

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            +++  N ++  L+ ALG      +  E LRY KV++
Sbjct: 355 IDRVLKNNEVQALITALGTGIHDDFDMEKLRYHKVVL 391


>gi|20387116|dbj|BAB91258.1| gyrase B [Streptomyces alboverticillatus]
 gi|20387216|dbj|BAB91308.1| gyrase B [Streptomyces septatus]
          Length = 399

 Score =  220 bits (560), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 137/401 (34%), Positives = 215/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL+K E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGFRWTQDYKLGVPTAPLQKNEAT-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  ++   +  + +  ++ G     E+
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLRISLTDLRVDHVDEEGKALTVEY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTI 322
           ++ GG+  +++     +  +          +      ++E A+ W  +  E + S+ NTI
Sbjct: 119 HYEGGIVDFVKYLNSRKGELIHPTVIDIDAEDKERMLSLEVAMQWNSQYSEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I +YA   +   ++  ++  +D+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGEDIREGLTAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+  + +    +L +NP EA  ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAKTFVQKVVHEHLTDWLDRNPNEAADIIRKGIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +KI  N ++  L+ A G      +    LRY K+I+
Sbjct: 359 EKARVDKILQNTEVQALISAFGTGVHEDFDIAKLRYHKIIL 399


>gi|86169557|gb|ABC87018.1| DNA gyrase subunit B [Leuconostoc mesenteroides subsp. dextranicum]
          Length = 393

 Score =  220 bits (560), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 145/401 (36%), Positives = 223/401 (55%), Gaps = 13/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKR 203
              Y++SGGLHGVG SVVNALS +L V V R N ++   F  G +  +     E+   +R
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTDLDVKVVRDNKVYYMDFKVGRVHTTMRTLDEEPTIER 60

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F+PD  IF +   ++   LL   +  A+L+  ++   +  +        P KE F
Sbjct: 61  GTIVHFKPDTDIFRETTTYNYKTLLTRVRELAFLNKGLRISIADKR-----LEEPIKESF 115

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTI 322
           +F GG+K Y+Q   E++ +I  E    + E+ G     VE A+ +  +    + ++ N I
Sbjct: 116 HFEGGIKEYVQYLNEDKQVIFPEPVYVEGEENGI---VVEAALQYTTDIKDSLRTFANYI 172

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE+G + ALTR I  YA  +   +    S+  +D+      I+S+   +P+F 
Sbjct: 173 NTYEGGTHETGFKTALTRVINDYARKSGQIKDGAESLTGEDVREGMTAIVSIKHPDPQFE 232

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + DA++  +    + F  ++++NP  A +++E  +   + RL  ++ RE+  
Sbjct: 233 GQTKTKLGNSDARQATDRMFSETFSRFMMENPNVAKQIVEKGVLAQKARLAAKRAREMTR 292

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +++ +    LPG+LAD + N    +ELFIVEGDSAGGSAKQ RNR  QA+LP+RGKILNV
Sbjct: 293 KQSGLEIGNLPGRLADNTSNDPAISELFIVEGDSAGGSAKQGRNRVTQAILPIRGKILNV 352

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  E++  N++I  L  A+G      +  E   Y KVII
Sbjct: 353 GKASLERVLANEEIRSLFTAMGTGFGDDFNVEKANYHKVII 393


>gi|19912109|dbj|BAB88366.1| DNA gyrase subunit B [Cytophaga sp. MBIC01482]
          Length = 391

 Score =  220 bits (559), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 149/395 (37%), Positives = 218/395 (55%), Gaps = 9/395 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+S VNALSD L  TV R   I+ Q++ RG  + P++      +KRGT +TF
Sbjct: 1   VSGGLHGVGVSCVNALSDHLKATVYRDGKIWEQEYERGKAMYPVKAIGDT-DKRGTDVTF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD  IF     F    L    +  A+L+  +K   +  +   E+      + F    GL
Sbjct: 60  LPDRSIFTQTTEFSYETLANRLRELAFLNKGIKIILTDKRHKDEEG-NFVTDVFQSEEGL 118

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K +++   + R  I +++ + + EK G     VE A+ + +     + SY N I T EGG
Sbjct: 119 KEFIRFLDDTRQPIIADVISMEGEKNGIP---VEVAMIYNDSYAENLHSYVNNINTHEGG 175

Query: 329 THESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R  LT  +KKYA+ +    K    I  DD       I+SV ++EP+F GQTKTK
Sbjct: 176 THLAGFRRGLTSTLKKYADASGLLDKLKFDIAGDDFREGLTAIISVKVQEPQFEGQTKTK 235

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIR 445
           L + +    V  A+    + YL +NP +A  +++ VI  ++ R   RK RE+  RKT + 
Sbjct: 236 LGNREVTSAVSQAVSQMLEAYLEENPNDAKTIVQKVILAAQARHAARKAREMVQRKTVMS 295

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R  QA++PLRGKILNV  A + 
Sbjct: 296 GGGLPGKLSDCSETDPTLCEVFLVEGDSAGGTAKQGRDREFQAIMPLRGKILNVEKAMTH 355

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           K+  N++I D+  ALG    ++   + L  EK+  
Sbjct: 356 KVFENEEIRDIYTALGVTIGTEEDSKALNLEKLRY 390


>gi|90185706|emb|CAJ84447.1| gyrase B protein [Vibrio splendidus]
          Length = 398

 Score =  220 bits (559), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 150/408 (36%), Positives = 225/408 (55%), Gaps = 15/408 (3%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +  G P +PL      
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVGDT 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            +K GT I F P  + F +   F    L K  +  ++L+  V       +E        +
Sbjct: 61  -DKTGTEIRFWPSEETFNN-IEFHYDILAKRLRELSFLNSGVSIKLIDKRE------EDK 112

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
            + F + GG++ +++    N++ I  +IF    E++     TVE A+ W +     I  +
Sbjct: 113 MDHFEYEGGIQAFVEHLNTNKTPIIQKIFHFDHERED--GITVEVAMQWNDGYQENIYCF 170

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GG H +G R ALTR +  + +      K   S   DD       I+SV + +
Sbjct: 171 TNNIPQRDGGAHLAGFRGALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPD 230

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQ 435
           P+F+ QTK KLVS + +  VE+ + +    +L++NP EA  +   +I         R+ +
Sbjct: 231 PKFSSQTKDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAR 290

Query: 436 REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
               RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GK
Sbjct: 291 EMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGK 350

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
           ILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 351 ILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 398


>gi|308153142|dbj|BAJ22160.1| DNA gyrase subunit B [Saccharomonospora azurea]
          Length = 399

 Score =  220 bits (559), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 142/405 (35%), Positives = 215/405 (53%), Gaps = 17/405 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y +SGGLHGVG+SVVNALS  L V V R   I+ Q + + +P   ++K      + GT 
Sbjct: 1   SYAVSGGLHGVGVSVVNALSTALDVEVHRDGRIWVQHYEKSVPGDLIDK--GPTERTGTS 58

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE---- 262
           +TF  DP IF     + A  + +  Q  A+L+  +      ++   E       E     
Sbjct: 59  VTFWADPDIFETT-EYSAETVARRLQEMAFLNKGLTIVLRDERVADEADEDATGERAGIK 117

Query: 263 ---FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              +Y+PGGL+ ++     ++  I   +   + + +G     VE A+ W     P + ++
Sbjct: 118 ERTYYYPGGLQDFVAYINASKDPIHPSVIGFEQKGEG---LEVEVAMQWNSSFTPSVYTF 174

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            NTI T EGGTHE G R ALTR +  YA   +   ++  ++  DD+      I+S+ + E
Sbjct: 175 ANTINTHEGGTHEEGFRAALTRVVNAYARDKKLLKEKDANLTGDDVREGLAAIVSIKLAE 234

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F GQTKTKL + +A+  V+    +    +  +NP EA  ++   +  S+ RL  RK R
Sbjct: 235 PQFEGQTKTKLGNSEARSFVQTTCNEWLADWFERNPAEAKIIINKAVSSSQARLAARKAR 294

Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           + V RK A+    LPGKL DC        EL+IVEGDSAGGSAK+ R+   QA+LP+RGK
Sbjct: 295 DLVRRKGAMDIGGLPGKLKDCRSRDPEECELYIVEGDSAGGSAKEGRDSRYQAILPIRGK 354

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           I+NV  A  +++  NQ++  L+ ALG      +    LRY KV++
Sbjct: 355 IINVEKARIDRVLKNQEVQSLITALGTGIHDDFDISKLRYHKVVL 399


>gi|161085580|dbj|BAF93877.1| DNA gyrase B [Bacillus sp. YM6-204]
          Length = 390

 Score =  220 bits (559), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 141/400 (35%), Positives = 213/400 (53%), Gaps = 14/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS E  V V R+  I   KF RG  +  L+      ++ G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSVETIVQVHREGHIHEIKFQRGKTIQELKIIGDT-DRNG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F+ DP+IF +   ++   L    +  AYL+  ++   + ++E  E+        ++
Sbjct: 60  TTTRFKADPEIFKETTVYEYDILAHRIRELAYLNRGIRITIADEREGEERSTT-----YH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+++Y++   +++  I   I     EK G    +VE A+ +         S+ N I 
Sbjct: 115 YEGGIRSYVEHLNQSKEPIHDPIDVL-GEKDGI---SVEIAMQYNAGFSSNIFSFANNIN 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHESG + ALTR I  YA      +    ++  +D+      I+SV   +P+F G
Sbjct: 171 TYEGGTHESGFKTALTRVINDYARKGGLLKEADANLTGEDVREGLTAIVSVKHPDPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNR 440
           QTKTKL + +  +       D F+ ++++NP  A K++E  ++        ++ +    R
Sbjct: 231 QTKTKLGNSEVSQITNALFSDGFERFMLENPTVARKVVEKGLMAARARVAAKKAREFTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADCS       E++IVEGDSAGGSAK  R+R  QA+LPLRGKILNV 
Sbjct: 291 KNALEVSSLPGKLADCSSTNPAECEIYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +KI +N +I  ++ A G     ++  E  RY K+II
Sbjct: 351 KARLDKILSNAEIRAMITAFGTGIGEEFNLEKARYHKIII 390


>gi|313747302|dbj|BAJ41200.1| DNA gyrase subunit B [Bacillus sp. 2H604W]
          Length = 390

 Score =  220 bits (559), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 140/400 (35%), Positives = 212/400 (53%), Gaps = 14/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS E  V V R+  I   KF RG     L    +  N  G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSVETIVQVHREGQIHEIKFERGKTAQKLTVIGET-NHNG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F+ DP+IF +   ++   L    +  AYL+  +K   + ++   E+        ++
Sbjct: 60  TTTRFKADPEIFKETTIYEFDILAHRIRELAYLNRGIKITITDERGEEERSTT-----YH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+++Y++   +++  I   I     EK G    +VE A+ +         S+ N I 
Sbjct: 115 YEGGIRSYVEHLNQSKDPIHEPIDVL-GEKDGI---SVEIAMQYNAGFSSNIFSFANNIN 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHESG + ALTR I  YA      +    ++  +D+      I+S+   +P+F G
Sbjct: 171 TYEGGTHESGFKTALTRVINDYARKNGLLKEADANLTGEDVREGLTAIVSIKHPDPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNR 440
           QTKTKL + +  +   +   D F+ ++++NP  A K++E  ++        ++ +    R
Sbjct: 231 QTKTKLGNSEVSQITNSLFSDGFERFMLENPTVARKIIEKGLMAARARVAAKKAREFTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS       E++IVEGDSAGGSAK  R+R  QA+LPLRGKILNV 
Sbjct: 291 KSALEVSSLPGKLADCSSTNPADCEIYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  ++I +N +I  ++ A G     ++  E  RY K+II
Sbjct: 351 KARLDRILSNAEIRAMITAFGTGIGEEFNLEKARYHKIII 390


>gi|4001686|dbj|BAA35072.1| DNA gyrase subunit B [Micromonospora chersina]
          Length = 393

 Score =  220 bits (559), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 123/399 (30%), Positives = 208/399 (52%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS ++ V + +   ++ Q++    P    +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTKMAVEIHKDGFVWRQEYHNSKPTPLEK--GEATDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PD  +F     FD   + +  Q  A+L+  +      ++   ++ G P +  F+
Sbjct: 59  SAVSFWPDADVFETV-DFDFQTIYRRLQEMAFLTRGLTIHLLDERVAEDEEGKPREVTFH 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    +++ I   +     E++G    +VE A+ W E     + ++ N I 
Sbjct: 118 YEGGIADFVRHLNASKNPIHKTVVEFGAEEEG---MSVEIAMQWNESYGESVYTFANNIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQ
Sbjct: 175 THEGGTHEEGFRAALTSVVNRYGAEKKLLKGDEKLSGEDIREGLAAIISVKLTNPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    D    +  +NP EA  +++            ++ ++   RK
Sbjct: 235 TKTKLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKTIIQKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY K+++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDIEKLRYHKIVL 393


>gi|126035228|gb|ABN72367.1| gyrase B subunit [Escherichia coli]
          Length = 384

 Score =  220 bits (559), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 143/395 (36%), Positives = 219/395 (55%), Gaps = 16/395 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ G
Sbjct: 60  RFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   +
Sbjct: 113 GIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRD 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK
Sbjct: 170 GGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTK 229

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTA 443
            KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A
Sbjct: 230 DKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGA 289

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A 
Sbjct: 290 LDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 349

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537
            +K+ ++Q++  L+ ALGC   R +Y  + LRY  
Sbjct: 350 FDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHN 384


>gi|84310528|gb|ABC55412.1| DNA gyrase subunit B [Bacillus subtilis]
          Length = 390

 Score =  220 bits (559), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 146/399 (36%), Positives = 217/399 (54%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            S Y+   GLHGV  SVVNALS EL VTV R   I  Q + RG+P++ LE   +  +  G
Sbjct: 1   GSGYKYPAGLHGVSASVVNALSTELDVTVHRDGKIHRQTYKRGVPVTDLEIIGET-DHTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F PDP+IF +   +D   L    +  A+L+  V       +E  E+        ++
Sbjct: 60  TTTHFVPDPEIFSETTEYDYDLLANRVRELAFLTKGVNITIEDKREGQERKNE-----YH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K+Y++    ++ ++  E    + EK G    TVE A+ + +     I S+ N I 
Sbjct: 115 YEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNIN 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G +  LTR I  YA      +    ++  DD+      I+S+   +P+F G
Sbjct: 172 TYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + +A+   +       + ++++NP  A K+++  +  +  R+  +K RE   R
Sbjct: 232 QTKTKLGNSEARTITDTLFSTAMETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 292 KSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
            A  +KI +N ++  ++ ALG      +  E  R  KV+
Sbjct: 352 KARLDKILSNNEVRSMITALGTGIGEDFNLEKARSPKVV 390


>gi|32364176|gb|AAP80236.1| GyrB [Bisgaard Taxon 14]
          Length = 391

 Score =  220 bits (559), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 150/402 (37%), Positives = 232/402 (57%), Gaps = 15/402 (3%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD+++Y++SGGLHGVG+SVVNALSD+L +T+ R+  +  Q +S G+P +PL    +   +
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSDQLQLTIRREGKVHEQFYSLGVPQAPLAVIGET-EQ 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT + F P P  F +   F+   L K  +  ++L+  V       +         + + 
Sbjct: 60  TGTTVRFLPSPATFTNIH-FEYELLAKRLRELSFLNSGVSIKLIDQRS-------DKSDH 111

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNT 321
           F++ GG++ +++   +N++ I ++ F    EK+      VE A+ W +   E    + N 
Sbjct: 112 FHYEGGIRAFVEYLNKNKNPIHNQPFYFSIEKED--GIGVEVALQWNDGFQENLYCFTNN 169

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFA 380
           I   +G TH +  R ALTR +  Y E  + K+  +S   DD     V ++SV + +P+F+
Sbjct: 170 IPQRDGATHLAXFRAALTRTLNNYMEADEPKKSKVSASGDDAREGLVAVISVKVPDPKFS 229

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
            QTK KLVS + +  VE+   +    YL++NP +A  ++  +I+ +  R   RK RE+  
Sbjct: 230 SQTKDKLVSSEVKSAVESPWVERLQTYLLENPTDAKIIVGKIIDAAPAREAARKAREMTR 289

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAG SAKQ RNR NQA+LPL+GKILNV
Sbjct: 290 RKGALDLGGLPGKLADCQERDPALSELYIVEGDSAGCSAKQGRNRKNQAILPLKGKILNV 349

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
             A  +K+ ++Q++  L+ ALGC   R +Y  E LRY K+II
Sbjct: 350 EKARFDKMLSSQEVGTLITALGCGIGRDEYNPEKLRYHKIII 391


>gi|262092494|gb|ACY25665.1| DNA gyrase B [Ruegeria scottomollicae]
          Length = 397

 Score =  220 bits (559), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 141/406 (34%), Positives = 218/406 (53%), Gaps = 14/406 (3%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD+++Y++SGGLHGVG+SVVNALSD L + + R+      +F RG     L       
Sbjct: 1   GKFDSNSYKVSGGLHGVGVSVVNALSDWLELRIWRKGKEHVARFERGDTAEHLSVVGDCG 60

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
           ++ GT + F      F +   F    L K  +  A+L+  V+   + ++          +
Sbjct: 61  DRTGTEVRFLASTDTFSN-LEFSFETLEKRLRELAFLNSGVRIVLADER-----PAERLE 114

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
            E ++ GG+K +++    ++S +       K E+       +E A+ W +     +  + 
Sbjct: 115 TELFYEGGVKEFVKYLDRSKSPVMEAPIYIKGERD---EIGIEIAMWWNDSYHETVLPFT 171

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREP 377
           N I   +GGTH +G R ALTR I  YA+ +   +        DD       +LSV + +P
Sbjct: 172 NNIPQRDGGTHVAGFRGALTRTINNYAQSSGIAKREKISFTGDDAREGLTCVLSVKVPDP 231

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F+ QTK KLVS + +  VE+ + +    +  +NP  A +++  +IE +  R   RK RE
Sbjct: 232 KFSSQTKDKLVSSEVRPVVESLMGEKLSEWFEENPNVAKQVVGKIIEAALAREAARKARE 291

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              RKTA+    L GKL DCS+     TE+F+VEGDSAGGSA+  R+R  QA+LPL+GKI
Sbjct: 292 LTRRKTAMDVNFLAGKLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKI 351

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIM 541
           LNV  A  +++  +Q+I +LV ALG    R ++  E LRY K++IM
Sbjct: 352 LNVERARFDRMLGSQEIGNLVMALGTGIGRDEFNIEKLRYHKIVIM 397


>gi|324039426|dbj|BAJ78466.1| DNA gyrase subunit B [Alcanivorax sp. Ksm-2]
 gi|324039452|dbj|BAJ78479.1| DNA gyrase subunit B [Alcanivorax sp. Wf-1]
 gi|324039454|dbj|BAJ78480.1| DNA gyrase subunit B [Alcanivorax sp. Wf-2]
 gi|324039458|dbj|BAJ78482.1| DNA gyrase subunit B [Alcanivorax sp. Wf-4]
          Length = 393

 Score =  220 bits (559), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 152/405 (37%), Positives = 227/405 (56%), Gaps = 18/405 (4%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D++TY++SGGLHGVG+SVVNALS+EL +T+ R   +  Q +  G+P +PLE      +  
Sbjct: 1   DDNTYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYHHGVPANPLEVVG-TTDSS 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + FRP P+ F +   F    L K  +  ++L+  V+     ++   E       + F
Sbjct: 60  GTAVHFRPSPETFSNI-KFHYDILAKRLRELSFLNSGVRIHLMDERSGDE-------DVF 111

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
            + GGL  ++     N++ ++       + E+ G     VE A+ W +     I  + N 
Sbjct: 112 EYEGGLSAFVSYLNTNKTALNQVFHFNYEREEDGI---AVEVAMQWNDSYQESIFCFTNN 168

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R ALTR +  Y +      K   +   DD       ++SV + +P+F
Sbjct: 169 IPQRDGGTHLAGFRAALTRTLNSYMDKEGFLKKEKANPSGDDAREGLTAVISVKVPDPKF 228

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REV 438
           + QTK KLVS + +  VE  + D F  YL++NP EA  +++ +I+ +  R   RK     
Sbjct: 229 SSQTKDKLVSSEVKSAVEQTMGDLFQDYLLENPTEARSIVQKIIDAARARDAARKAREMT 288

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC Q     +EL+IVEGDSAGGSAKQ R+R NQA+LPL+GKILN
Sbjct: 289 RRKGALDIAGLPGKLADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILN 348

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
           V  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY ++IIMT
Sbjct: 349 VEKARFDKMLSSQEVGTLITALGCGIGRDEYNIDKLRYHRIIIMT 393


>gi|163256338|dbj|BAF95679.1| DNA gyrase subunit B [Bradyrhizobium sp. MAFF 210197]
          Length = 260

 Score =  220 bits (559), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 98/268 (36%), Positives = 149/268 (55%), Gaps = 11/268 (4%)

Query: 83  DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142
           D+A+DE +AG+A  ++V L+ +  +TV D+GRGIPV+ H K    S  E+I+T LHAGGK
Sbjct: 2   DDAIDEAVAGHATRVDVVLNADNSVTVRDDGRGIPVDIH-KGEGISAAEVIMTQLHAGGK 60

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD ++Y++SGGLHGVG+SVVNALS +L + + R +     +F+ G  ++PL+       +
Sbjct: 61  FDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHGDAVAPLKVVGDAPGR 120

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
           RGT +TF   P+ F +   +D A L    +  A+L+  V    S  +   EK      EE
Sbjct: 121 RGTEVTFLASPETFKN-IEYDFATLEHRLRELAFLNSGVNIILSDMRHAVEKR-----EE 174

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNT 321
            ++ GG++ +++    N+  I       + E  G     VE A+ W +   E    + N 
Sbjct: 175 MHYSGGVEEFVKYLDRNKKAIVPAPIMVRAEANGI---GVEAALWWNDSYHENVLCFTNN 231

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELT 349
           I   +GGTH +G R ALTR +  YAE  
Sbjct: 232 IPQRDGGTHLAGFRGALTRQVNGYAEAN 259


>gi|18147165|dbj|BAB83063.1| DNA gyrase subunit B [Alcanivorax sp. Tak-1]
          Length = 392

 Score =  220 bits (559), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 141/404 (34%), Positives = 220/404 (54%), Gaps = 17/404 (4%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS+ L +T+ R   ++ Q +  G+P   L+      +  
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEHLKLTIRRHGNVYEQTYHHGVPQKDLDVVGST-DST 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + FRP P+ F +   F    L K  +  ++L+  V+     ++   E       + F
Sbjct: 60  GTAVHFRPSPETFTNI-KFHYDILAKRLRELSFLNSGVRIHLMDERSGDE-------DVF 111

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GGL  ++    +++S ++         + G     VE A+ W +     I  + N I
Sbjct: 112 QYDGGLSAFVSYLNQSKSALNEVFHFQIDREDGI---GVEVAMQWNDSYQENIFCFTNNI 168

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  Y +      K   +   DD       ++SV + +P+F+
Sbjct: 169 PQRDGGTHLAGFRAALTRSLNNYMDKEGFLKKEKANPSGDDAREGLTAVISVKVPDPKFS 228

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVN 439
            QTK KLVS + +  VE  + + F  YL+++P EA  +++ +I+ +  R   RK      
Sbjct: 229 SQTKDKLVSSEVKTAVEQTMSERFQDYLLEHPGEAKMIVQKIIDAARARDAARKAREMTR 288

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ R+R  QA+LPL+GKILNV
Sbjct: 289 RKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRDRKYQAILPLKGKILNV 348

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMT 542
             A  +K+ ++Q++  L+ ALGC         + LRY ++IIMT
Sbjct: 349 EKARFDKMLSSQEVATLITALGCGIGRDEYNADKLRYHRIIIMT 392


>gi|84310522|gb|ABC55409.1| DNA gyrase subunit B [Bacillus subtilis]
          Length = 390

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 146/399 (36%), Positives = 218/399 (54%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            S Y+   GLHGV  SVVNALS EL VTV R   I  Q + RG+P++ LE   +  +  G
Sbjct: 1   GSGYKYPAGLHGVSASVVNALSTELDVTVHRDGKIHRQTYKRGVPVTDLEIIGET-DHTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F PDP+IF +   +D   L    +  A+L+  V       +E  E+        ++
Sbjct: 60  TTTHFVPDPEIFSETTEYDYDLLANRVRELAFLTKGVNITIEDKREGQERKNE-----YH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K+Y++    ++ ++  E    + EK G    TVE A+ + +     I S+ N I 
Sbjct: 115 YEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNIN 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G +  LTR I  YA      +    ++  DD+      I+S+   +P+F G
Sbjct: 172 TYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + +A+   +       + ++++NP  A K+++  +  +  R+  +K RE   R
Sbjct: 232 QTKTKLGNSEARTITDTLFSTAMETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 292 KSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
            A  +KI +N ++  ++ ALG  +   +  E  R  KV+
Sbjct: 352 KARLDKILSNNEVRSMITALGPGSGEDFNLEKARCPKVV 390


>gi|313747316|dbj|BAJ41205.1| DNA gyrase subunit B [Terribacillus saccharophilus]
 gi|313747318|dbj|BAJ41206.1| DNA gyrase subunit B [Terribacillus saccharophilus]
          Length = 390

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 143/400 (35%), Positives = 215/400 (53%), Gaps = 14/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS +L V V R   I  Q F RGIP   L+   +  ++ G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTQLDVMVHRDGKIHEQSFQRGIPTGDLQVTGE-SDRTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F+PDP+IF +   ++   LL   +  A+L+  +       +E       PE   F+
Sbjct: 60  TITHFKPDPEIFTETTEYNKETLLVRIRELAFLNKGLAISLEDRREE-----NPEPVTFH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+++Y++    ++ ++    +     +      TVE A+ + +     I S+ N I 
Sbjct: 115 YEGGIRSYVEHLNRSKEVLHEPFYA----ENTDSEITVEVALQYNDGYTSSIYSFANNIH 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G +  LTR I  YA      +    ++  DD+      I+S+   +P+F G
Sbjct: 171 TYEGGTHEAGFKSGLTRVINDYARKNNMFKEADPNLSGDDVREGLTAIISIKHPDPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNR 440
           QTKTKL + +A++  + A  + F  +L +NP  A  ++E  ++        +R +    R
Sbjct: 231 QTKTKLGNSEARQVTDAAFTELFSKFLFENPDTARIVVEKGLMASRARIAAKRARELTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADCS   A  +EL++VEGDSAGGSAKQ R+R  QA+LPLRGKI+NV 
Sbjct: 291 KGALEVSSLPGKLADCSSKDATISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKIINVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +KI  N +I  ++ ALG      +     RY K++I
Sbjct: 351 KARLDKILANNEIRAMITALGTGIGEDFDISKARYHKLVI 390


>gi|126035254|gb|ABN72380.1| gyrase B subunit [Enterobacter cloacae]
          Length = 384

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 145/394 (36%), Positives = 220/394 (55%), Gaps = 16/394 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL       +K GT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYQHGVPEAPLAVTGDT-DKTGTMV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ G
Sbjct: 60  RFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE-------DHFHYEG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   +
Sbjct: 113 GIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRD 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK
Sbjct: 170 GGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTK 229

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTA 443
            KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A
Sbjct: 230 DKLVSSEVKSAVEQQMNELLSEYLLENPNDAKIVVGKIIDAARAREAARKAREMTRRKGA 289

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A 
Sbjct: 290 LDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 349

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYE 536
            +K+ ++Q++  L+ ALGC   R +Y  + LRY 
Sbjct: 350 FDKMLSSQEVATLITALGCGIGRDEYNPDKLRYH 383


>gi|126035206|gb|ABN72356.1| gyrase B subunit [Escherichia coli]
 gi|126035320|gb|ABN72413.1| gyrase B subunit [Shigella boydii]
          Length = 384

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 143/394 (36%), Positives = 219/394 (55%), Gaps = 16/394 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ G
Sbjct: 60  RFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   +
Sbjct: 113 GIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRD 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK
Sbjct: 170 GGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTK 229

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTA 443
            KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A
Sbjct: 230 DKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGA 289

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A 
Sbjct: 290 LDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 349

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYE 536
            +K+ ++Q++  L+ ALGC   R +Y  + LRY 
Sbjct: 350 FDKMLSSQEVATLITALGCGIGRDEYNPDKLRYH 383


>gi|95105514|gb|ABF54924.1| DNA gyrase subunit B [Photobacterium leiognathi]
          Length = 391

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 143/401 (35%), Positives = 227/401 (56%), Gaps = 15/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+++ +T+ R   I  Q +  G+P +PL       ++ G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKVELTIKRGGHIHQQVYRHGVPDAPLAVIGDT-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           TRI F P  + F +   F    L K  +  ++L+  V    + ++E        + + F 
Sbjct: 60  TRIRFWPSEETFTNI-EFQYEILAKRLRELSFLNSGVSIKLNDERE------EGKHDHFM 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG++ +++    N++ I  ++F   +E+      +VE A+ W +     I  + N I 
Sbjct: 113 YEGGIQAFVEHLNRNKTPIHPKVFHFDSERDD--GISVEVAMQWNDGFQESIFCFTNNIP 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ 
Sbjct: 171 QRDGGTHLAGFRGALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSS 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE+A+ +    +L++NP +A  +   +I+ S  R   RK R    R
Sbjct: 231 QTKDKLVSSEVKAAVESAMNEKLAEFLLENPADAKTVCTKIIDASRAREAARKAREMTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 291 KGALDLAGLPGKLADCQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +II
Sbjct: 351 KARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIII 391


>gi|27544680|dbj|BAC55035.1| DNA gyrase B subunit [Fluoribacter gormanii]
          Length = 389

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 144/401 (35%), Positives = 229/401 (57%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+ELH+TV R   I  Q +  G+P +P+ +        G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELHLTVRRHGKIHEQHYRNGVPEAPMAETGDAT-TTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+I F+P  + F +   F    L K  +  +YL+  V      ++          ++ F+
Sbjct: 60  TQIWFKPSAETFSNI-EFHYDILAKRLRELSYLNSGVCIHLFDERSQ-------RQDTFH 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+K +++   +N+++I   +F+   EK       VE ++ W +   E    + N I 
Sbjct: 112 YEGGIKAFVEHLNKNKTVIIPTVFSMSAEKDNI---VVELSMQWNDSYQETLYCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  Y E      K  +S   DD       +LSV + +P+F+ 
Sbjct: 169 QRDGGTHMAGFRAALTRTLNNYIESEGYAKKAKVSPTGDDAREGLTAVLSVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE+++ + F+ +L++NP  A  ++  +I+ +  R   R+ R    R
Sbjct: 229 QTKDKLVSSEVKSVVESSVAEKFNDFLLENPACAKAIVAKIIDAARAREAARRAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC     +Y  + +RY ++II
Sbjct: 349 KARFDKMLSSQEVATLITALGCGIGPDEYDPDKVRYHRIII 389


>gi|211927069|dbj|BAG82787.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 420

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 139/426 (32%), Positives = 216/426 (50%), Gaps = 34/426 (7%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
            D+S Y +SGGLHGVG+SVVNALS  L V +A     + Q + R +P +   K+ +   K
Sbjct: 1   GDDSAYAVSGGLHGVGVSVVNALSTRLEVEIATDGYEWFQHYDRSVPGTL--KQGEKTKK 58

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-------- 254
            GT + F  DP IF     +D   + +  Q  A+L+  +    + ++   E+        
Sbjct: 59  TGTTVRFWADPDIFETT-DYDFETVARRLQEMAFLNKGLTINLTDERVRNEEVVDEVVSD 117

Query: 255 ----------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH 298
                               +   F++PGGL  +++     ++ I S I     +  G  
Sbjct: 118 TADAPKSAREEAEERTTQKVKHRTFHYPGGLVDFVKHINRTKNPIHSSIVDFSGKGPGH- 176

Query: 299 RGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAI 355
              VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +    +  
Sbjct: 177 --EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDRKLLKDKDP 234

Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415
           ++  DD+      ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A
Sbjct: 235 NLTGDDIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPSDA 294

Query: 416 TKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSA 474
             ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSA
Sbjct: 295 KTVVNKAVSSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSA 354

Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
           GGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LR
Sbjct: 355 GGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDISKLR 414

Query: 535 YEKVII 540
           Y K+++
Sbjct: 415 YHKIVL 420


>gi|86169561|gb|ABC87020.1| DNA gyrase subunit B [Leuconostoc citreum]
          Length = 376

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 137/383 (35%), Positives = 211/383 (55%), Gaps = 13/383 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKR 203
              Y++SGGLHGVG SVVNALS  L V V R   ++   F  G +    ++  EK    R
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTNLDVKVVRDGQVYYMDFKVGRVNTRMVKLDEKPTIAR 60

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F+PD  IF +   F+   LL   +  A+L+  ++   + ++        P  E F
Sbjct: 61  GTIVHFKPDADIFRETTTFNYNTLLTRVRELAFLNKGLRISITDNR-----AETPMTESF 115

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTI 322
           ++ GG+K Y++     + ++  E    + E+ G     VE A+ +  +    + ++ N I
Sbjct: 116 HYEGGIKEYVKYLNAEKVVVFPEPVYVEGEENGI---VVEAALQYTTDVKDSLRTFTNNI 172

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE+G + ALTR I  YA      +    S+  +D+      I+S+   +P+F 
Sbjct: 173 NTYEGGTHETGFKTALTRVINDYARKNGQLKENAESLTGEDVREGMTAIVSIKHPDPQFE 232

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + DA++  +    + F  ++++NP  A +++E  I   + RL  ++ RE+  
Sbjct: 233 GQTKTKLGNSDARQATDRMFSETFSRFMMENPAVAKQIVEKGILAQKARLAAKRAREMTR 292

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +++ +    LPGKLAD + N    +ELFIVEGDSAGGSAKQ RNR  QA+LP+RGKILNV
Sbjct: 293 KQSGLEIGNLPGKLADNTSNDPAISELFIVEGDSAGGSAKQGRNRLTQAILPIRGKILNV 352

Query: 500 ASAGSEKIRNNQQIMDLVQALGC 522
             A  +K+  N++I  L  A+G 
Sbjct: 353 EKATLDKVLANEEIRSLFTAMGT 375


>gi|84310496|gb|ABC55396.1| DNA gyrase subunit B [Bacillus sonorensis]
          Length = 390

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 146/399 (36%), Positives = 216/399 (54%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            S Y++SGGLHGVG SVVNALS EL VTV R   +  Q++ RG+P + L+          
Sbjct: 1   GSGYKVSGGLHGVGASVVNALSTELDVTVYRDGKVHYQEYERGVPKADLKVIGDTDVTGT 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
               F+PDP+IF +   +D   L    +  A+L+  VK      +E  E+        + 
Sbjct: 61  -TTHFKPDPEIFTETTEYDYDTLATRVRELAFLTKGVKITIEDKREGKERKNE-----YC 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K+Y++    +R +I  E    +  K G    TVE A+ + +     I S+ N I 
Sbjct: 115 YEGGIKSYVEHLNRSREVIHEEPVYIEGSKDGI---TVEVALQYNDSYTSNIYSFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G +  LTR I  YA       +   ++  +D+      I+S+   +P+F G
Sbjct: 172 TYEGGTHEAGFKTGLTRVINDYARRNGVFKENDPNLSGEDVREGLTAIISIKHPDPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNR 440
           QTKTKL + +A+   +    +  + +L++NP  A K++E  V+        ++ +    R
Sbjct: 232 QTKTKLGNSEARAITDALFSEALEKFLLENPDSAKKIVEKGVMAARARMAAKKARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 292 KSALEVSNLPGKLADCSSKDPTISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
            A  +KI +N ++  ++ ALG      +  E  RY KV+
Sbjct: 352 KARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVV 390


>gi|86651911|gb|ABD14443.1| DNA gyrase beta subunit [Photobacterium leiognathi]
          Length = 390

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 146/400 (36%), Positives = 226/400 (56%), Gaps = 15/400 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS+++ +T+ R   I  Q +  G+P +PL       ++ GTRI F
Sbjct: 1   VSGGLHGVGVSVVNALSEKVELTIKRGGHIHQQVYRHGVPDAPLAVIGDT-DETGTRIRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F +   F    L K  +  ++L+  V    + ++E        + + F + GG+
Sbjct: 60  WPSEETFTNI-EFQYEILAKRLRELSFLNSGVSIKLNDERE------EGKHDHFMYEGGI 112

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           + +++    N++ I  ++F   +E+      +VE A+ W +     I  + N I   +GG
Sbjct: 113 QAFVEHLNRNKTPIHPKVFHFDSERDD--GISVEVAMQWNDGFQESIFCFTNNIPQRDGG 170

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QTK K
Sbjct: 171 THLAGFRGALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQTKDK 230

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIR 445
           LVS + +  VE+A+ +    +L++NP +A  +   +I+ S  R   RK R    RK A+ 
Sbjct: 231 LVSSEVKAAVESAMNEKLAEFLLENPADAKTVCTKIIDASRAREAARKAREMTRRKGALD 290

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +
Sbjct: 291 LAGLPGKLADCQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 350

Query: 506 KIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           K+ ++Q++  L+ A+GC   R +Y  + LRY  +IIMTDA
Sbjct: 351 KMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIIIMTDA 390


>gi|308152489|dbj|BAJ22223.1| DNA gyrase subunit B [Mycobacterium agri]
          Length = 421

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 139/427 (32%), Positives = 214/427 (50%), Gaps = 35/427 (8%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
            +NS Y +SGGLHGVG+SVVNALS  L V + R    + Q +   +P +   K+ +  NK
Sbjct: 1   GENSGYAVSGGLHGVGVSVVNALSTRLEVDICRDGYEWFQTYDHAVPGTI--KQGEATNK 58

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP---- 258
            GT + F  DP++F     +D   + +  Q  A+L+  +    S ++  AE+        
Sbjct: 59  TGTTVRFWADPEVFETTN-YDFETVARRLQEHAFLNKGLTITLSDERVSAEEADADVAGD 117

Query: 259 ---------------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                                +   F++PGGL  +++     ++ I   I     +    
Sbjct: 118 TAEAPKSAEEKAAEAAGPAKTKNRTFHYPGGLVDFVRHINRTKTPIHQSIIDFSGKADNH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRA 354
               VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +     + 
Sbjct: 178 ---EVEVAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLLKDKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
            ++  DD+      ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP E
Sbjct: 235 PNLTGDDIREGLAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKICNEQLSHWFEANPAE 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   +  ++ RL  RK RE V RK+A     LPGKLADC       +EL++VEGDS
Sbjct: 295 AKTVVNKAVSSAQARLAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    L
Sbjct: 355 AGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDISKL 414

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 415 RYHKIVL 421


>gi|33590320|gb|AAQ22700.1| DNA gyrase subunit B [Photorhabdus temperata subsp. khanii NC19]
          Length = 381

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 140/389 (35%), Positives = 211/389 (54%), Gaps = 15/389 (3%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS++L + + R   +  Q +  G+P SPL+   +   + GTR+
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGET-EQTGTRV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P    F +   F    L K  +  ++L+  V       +   E       + F++ G
Sbjct: 60  RFWPSMDTFSNNTEFQHDILAKRLRELSFLNSGVSIRLLDKRTNIE-------DHFHYKG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K +++   +N++ I   +F   TEK       VE A+ W +     I  + N I   +
Sbjct: 113 GIKAFVEFLNKNKTPIHPNVFYFSTEKDSI---GVEVALQWNDGFQENIYCFTNNIPQRD 169

Query: 327 GGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH  G R A+TR +  Y +      K  +S   DD     V ++SV + +P+F+ QTK
Sbjct: 170 GGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTK 229

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTA 443
            KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A
Sbjct: 230 DKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVGKIIDAARAREAARKAREMTRRKGA 289

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A 
Sbjct: 290 LDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 349

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREED 532
            +K+ ++Q++  L+ ALGC         D
Sbjct: 350 FDKMLSSQEVATLITALGCGIGRDEYNPD 378


>gi|20387218|dbj|BAB91309.1| gyrase B [Streptomyces spiroverticillatus]
 gi|308152583|dbj|BAJ22270.1| DNA gyrase subunit B [Streptomyces spiroverticillatus]
          Length = 409

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 135/411 (32%), Positives = 214/411 (52%), Gaps = 17/411 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS ++ V +      ++Q +  G+P + LE+ E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTKVSVEIKTDGYRWTQDYKLGVPTAALERHEAT-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE----------- 253
           T +TF  D  IF     +    L +  Q  A+L+  +    + ++E A+           
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLTIKLTDERESAKAVAGADTAETS 118

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP 313
                    +++ GG+  +++     +  +          +      +VE A+ W  +  
Sbjct: 119 DDEQVRTVTYHYEGGIVDFVKYLNSRKGELIHPTVIDVEAEDKERLLSVEIAMQWNSQYS 178

Query: 314 E-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
           E + S+ NTI T EGGTHE G R ALT  + +YA   +   ++  ++  +D+      I+
Sbjct: 179 EGVYSFANTIHTHEGGTHEEGFRAALTGLVNRYAREKKFLREKDDNLAGEDIREGLTAII 238

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV + EP+F GQTKTKL + +A+  V+  + +  + +  +NP EA  ++   I+ +  R+
Sbjct: 239 SVKLGEPQFEGQTKTKLGNTEAKTFVQKVVHEHLNDWFDRNPNEAADIVRKAIQAATARV 298

Query: 431 RRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK R++ R+  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+
Sbjct: 299 AARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPMYQAI 358

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           LP+RGKILNV  A  +KI  N ++  L+ A G      +  E LRY K+I+
Sbjct: 359 LPIRGKILNVEKARIDKILQNTEVQALISAFGTGVHEDFDIEKLRYHKIIL 409


>gi|295979499|dbj|BAJ07422.1| DNA gyrase subunit B [Planktothrix agardhii]
 gi|295979517|dbj|BAJ07431.1| DNA gyrase subunit B [Planktothrix agardhii]
          Length = 352

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 113/339 (33%), Positives = 172/339 (50%), Gaps = 4/339 (1%)

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AGY   IE+  + NG +TV D+GRGIPV+ H K   KS LE +LT LHAGGKF    Y++
Sbjct: 1   AGYCTHIEIDFNANGSVTVTDDGRGIPVDTHSK-TGKSALETVLTVLHAGGKFGGGGYKV 59

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS+ L VTV R    +SQ+F RG P + L  K     + GT + F 
Sbjct: 60  SGGLHGVGVSVVNALSEWLEVTVFRDRKEYSQRFERGTPATELTSKPIKEARTGTSVCFL 119

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PD  IF     FD   +    +  AYL+  VK   +  +        P  E + + GG++
Sbjct: 120 PDTSIFTTGIEFDCDTIASRLRELAYLNAGVKITLTDSRLELLNRENPRIETYCYEGGIR 179

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330
            Y+     ++  +  +I     E+    +  V         +  +  + N I T +GGTH
Sbjct: 180 EYIAYMNNDKQPLHEDIIYTCGERSNV-QIEVALQWCTDAYSDTVLGFANNIRTIDGGTH 238

Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             GL+  LTR +   A      +    ++  +++      ++S  + +PEF GQTKT+L 
Sbjct: 239 LEGLKTVLTRTLNAIARKRNKLKEGEANLGGENIREGLTAVISAKVPDPEFEGQTKTRLG 298

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
           + + +  V++ + +    YL  NP  A  ++E  I+  +
Sbjct: 299 NPEVRGIVDSLVGEALTEYLEFNPGIADAIIEKAIQAFK 337


>gi|18147157|dbj|BAB83059.1| DNA gyrase subunit B [Alcanivorax sp. Haw1]
          Length = 393

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 150/405 (37%), Positives = 220/405 (54%), Gaps = 18/405 (4%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D++TY++SGGLHGVG+SVVNALS+EL +T+ R   +  Q +  G+P  PLE         
Sbjct: 1   DDNTYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYRHGVPDKPLEVVG-TTETS 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + FRP  + F +   F    L K  +  ++L+  V+     ++   E       E F
Sbjct: 60  GTSVHFRPSAETFSNI-KFHYDILAKRLRELSFLNSGVRIHLKDERSGEE-------EIF 111

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
            + GGL  ++     N++ ++       + E+ G     VE A+ W +     I  + N 
Sbjct: 112 EYEGGLSAFVSYLNVNKTPLNQVFHFQYEREEDGI---AVEVAMQWNDSYQENIFCFTNN 168

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R ALTR +  Y +      K   +   DD       ++SV + +P+F
Sbjct: 169 IPQRDGGTHLAGFRGALTRTLNNYMDKEGLLKKEKANPSGDDAREGLTAVISVKVPDPKF 228

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REV 438
           + QTK KLVS + +  VE  + + F  YL++NP EA  + + +I+ +  R   RK     
Sbjct: 229 SSQTKDKLVSSEVKGAVEQTMGELFQDYLLENPGEAKAITQKIIDAARARDAARKAREMT 288

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC Q     +EL+IVEGDSAGGSAKQ R+R NQA+LPL+GKILN
Sbjct: 289 RRKGALDIAGLPGKLADCQQKDPAQSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILN 348

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMT 542
           V  A  +K+ ++Q++  L+ ALGC         E LRY ++IIMT
Sbjct: 349 VEKARFDKMLSSQEVGTLITALGCGIGRDEYNVEKLRYHRIIIMT 393


>gi|164608600|gb|ABY62591.1| DNA gyrase beta subunit [Aliivibrio salmonicida]
 gi|164608602|gb|ABY62592.1| DNA gyrase beta subunit [Aliivibrio salmonicida]
          Length = 398

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 155/407 (38%), Positives = 229/407 (56%), Gaps = 14/407 (3%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD+++Y++SGGLHGVG+SVVNALS+++ +T+ R+  IF Q +  G+P +PL       + 
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSEKVELTINRRGEIFQQIYCHGVPQAPLAVIG-TTDT 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT+I F P  + F +   F    L K  +  ++L+  V       +E        + + 
Sbjct: 60  TGTKIRFWPSDQTFANI-EFVYDILAKRLRELSFLNSGVSIRLQDMRE------EDKSDH 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           F F GG+K ++     N++ +  +IF   +E+K      VE A+ W +     I  Y N 
Sbjct: 113 FMFEGGIKAFVTHLNRNKTPVHQKIFYFDSERK-EDGIVVEVAMQWNDSYQENIFCYTNN 171

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GG H SG R ALTR +  + +      K   S   DD       ++SV + +P+F
Sbjct: 172 IPQRDGGAHLSGFRSALTRTLNSFMDKEGFSKKAKSSASGDDAREGLTAVVSVKVPDPKF 231

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EV 438
           + QTK KLVS + +  VE+A+ +    +L +NP EA  +   +I+ +  R   RK R   
Sbjct: 232 SSQTKDKLVSSEVKSAVESAMNEKLAEFLAENPGEAKMVCSKIIDAARAREAARKAREMT 291

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILN
Sbjct: 292 RRKGALDIAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILN 351

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           V  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDA
Sbjct: 352 VEKARFDKMISSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMTDA 398


>gi|126035306|gb|ABN72406.1| gyrase B subunit [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|126035314|gb|ABN72410.1| gyrase B subunit [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 383

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 143/393 (36%), Positives = 218/393 (55%), Gaps = 16/393 (4%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P +PL       +K GT + 
Sbjct: 1   KVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVR 59

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ GG
Sbjct: 60  FWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGG 112

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           +K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   +G
Sbjct: 113 IKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDG 169

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK 
Sbjct: 170 GTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKD 229

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAI 444
           KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+
Sbjct: 230 KLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGAL 289

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  
Sbjct: 290 DLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARF 349

Query: 505 EKIRNNQQIMDLVQALGCRT-RSQYREEDLRYE 536
           +K+ ++Q++  L+ ALGC   R +Y  + LRY 
Sbjct: 350 DKMLSSQEVATLITALGCGIGRDEYNPDKLRYH 382


>gi|198042706|gb|ACH81178.1| GyrB [Vibrio sp. UST000620-026]
          Length = 376

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 142/385 (36%), Positives = 214/385 (55%), Gaps = 14/385 (3%)

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
           I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +  G P +P
Sbjct: 1   IMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGQIHTQTYHHGEPQAP 60

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
           L       +K GT I F P  + F +   F    L K  +  ++L+  V      ++E  
Sbjct: 61  LAVIGDT-DKTGTEIRFWPSEETFSNVL-FHYDILAKRLRELSFLNSGVSIKLIDERE-- 116

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
                 + + F F GG++ ++     N++ I  +IF    E++     TVE A+ W +  
Sbjct: 117 ----EDKSDHFMFEGGIQAFVDHLNTNKTPIIQKIFHFDHERED--GITVEVAMQWNDGY 170

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369
              I  + N I   +GGTH +G R ALTR +  + +      K   +   DD       +
Sbjct: 171 QENIYCFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAV 230

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEE 428
           +SV + +P+F+ QTK KLVS + +  VE A+ +    +L++NP EA  +   +I      
Sbjct: 231 ISVKVPDPKFSSQTKDKLVSSEVKSAVEQAMGEKLSEFLIENPTEAKTVCTKIIDAARAR 290

Query: 429 RLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
              R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA
Sbjct: 291 DAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQA 350

Query: 489 VLPLRGKILNVASAGSEKIRNNQQI 513
           +LPL+GKILNV  A  +K+ ++Q++
Sbjct: 351 ILPLKGKILNVEKARFDKMLSSQEV 375


>gi|164608582|gb|ABY62582.1| DNA gyrase beta subunit [Aliivibrio fischeri]
          Length = 397

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 150/407 (36%), Positives = 230/407 (56%), Gaps = 15/407 (3%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I  Q +  G P +PL    K  + 
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSEKVELTIHRAGEIHQQVYHHGEPEAPLAVIGKT-DT 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT+I F P  + F +   F    L K  +  ++L+  V       +E        + + 
Sbjct: 60  TGTKIRFWPSEETFTNVV-FVYEILAKRLRELSFLNSGVSIKLQDMRE------EDKADH 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           F + GG++ ++Q    N++ I  ++F   +E++     +VE ++ W +     I  + N 
Sbjct: 113 FMYEGGIQAFVQHLNRNKTPIHQKVFHFDSERED--GISVEVSMQWNDGFQENIYCFTNN 170

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F
Sbjct: 171 IPQRDGGTHLAGFRSALTRTLNTFMDKEGFSKKAKAATSGDDAREGLTAVVSVKVPDPKF 230

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EV 438
           + QTK KLVS + +  VE+A+ +    +L +NP EA  +   +I+ +  R   RK R   
Sbjct: 231 SSQTKDKLVSSEVKSAVESAMGEKLSEFLAENPSEAKMVCSKIIDAARAREAARKAREMT 290

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILN
Sbjct: 291 RRKGALDIAGLPGKLADCQEKDPGLSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILN 350

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           V  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDA
Sbjct: 351 VEKARFDKMLSSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMTDA 397


>gi|22762029|dbj|BAC11801.1| gyrase B [Campylobacter jejuni]
          Length = 386

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 151/400 (37%), Positives = 215/400 (53%), Gaps = 18/400 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
             TY++SGGLHGVG+SVVNALS +L  TV R   I+ Q+FS G  +S      K +   G
Sbjct: 1   KDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSKK-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I F PD +IF     FD   L K  +  AYL+ ++   +  ++       + + E F+
Sbjct: 60  TTIEFWPDDQIFEVT-EFDYEILAKRFRELAYLNPKITINFKDNR-------VGKHESFH 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTIL 323
           F GG+  ++    +  +L  +  F+   E        VE A+ + +   E   S+ N I 
Sbjct: 112 FEGGISQFVTDLNKKEALTKAIFFSVDEED-----VNVEVALLYNDTYSENLLSFVNNIK 166

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T +GGTHE+G R+ LTR I  Y E      ++   I  DD+    + I+SV + EP+F G
Sbjct: 167 TPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGDDVREGLIAIVSVKVPEPQFEG 226

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTK KL S   +  V  A  +    Y  +NPIEA  ++   +  +  R   +K RE   +
Sbjct: 227 QTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRK 286

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K ++    LPGKLADC       +E+++VEGDSAGGSAKQ R RS QA+LPLRGKILNV 
Sbjct: 287 KESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVE 346

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +KI  ++QI +++ A GC     +    LRY K+II
Sbjct: 347 KARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIII 386


>gi|161085578|dbj|BAF93876.1| DNA gyrase B [Bacillus sp. YM6-008]
          Length = 390

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 142/400 (35%), Positives = 212/400 (53%), Gaps = 14/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS E  V V R+  I   KF RG  +  L       +  G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSIETIVQVHREGHIHEIKFERGKTVQELTVIGDT-DHNG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F+ DP+IF +   ++   L    +  AYL+  +K   + ++E   +        ++
Sbjct: 60  TTTRFKADPEIFKETTVYEYDILAHRIRELAYLNRGIKITIADEREEEMRSTT-----YH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+++Y++   +++  I   I     EK G    TVE A+ +         S+ N I 
Sbjct: 115 YEGGIRSYVEHLNQSKDPIHDPIDVL-GEKDGI---TVEIAMQYNAGFSSNIFSFANNIN 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHESG + ALTR I  YA  +   +    ++  +D+      I+SV   +P+F G
Sbjct: 171 TYEGGTHESGFKTALTRVINDYARKSGLLKESDANLTGEDVREGLTAIVSVKHPDPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNR 440
           QTKTKL + +  +   +   D F+ ++++NP  A K++E  ++        ++ +    R
Sbjct: 231 QTKTKLGNSEVSQITNSLFSDGFERFMLENPTVARKIVEKGLMAARARVAAKKAREFTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADCS       E++IVEGDSAGGSAK  R+R  QA+LPLRGKILNV 
Sbjct: 291 KNALEVSSLPGKLADCSSTNPADCEIYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +KI +N +I  ++ A G     ++  E  RY K+II
Sbjct: 351 KARLDKILSNAEIRAMITAFGTGIGEEFNLEKARYHKIII 390


>gi|108946660|gb|ABG23678.1| gyrase subunit B [Leptospira weilii]
 gi|108946674|gb|ABG23685.1| gyrase subunit B [Leptospira weilii]
 gi|108946676|gb|ABG23686.1| gyrase subunit B [Leptospira weilii]
 gi|108946678|gb|ABG23687.1| gyrase subunit B [Leptospira weilii]
          Length = 136

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 76/137 (55%), Positives = 101/137 (73%), Gaps = 1/137 (0%)

Query: 51  ILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVV 110
           ILEGLE VR RPGMYIG  DE  LH +  EV+DN++DE +AG+   I +S+  N  + V 
Sbjct: 1   ILEGLEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEIRISILPNNIIEVK 60

Query: 111 DNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELH 170
           DNGRGIPV+ HP     ST+E+++T LHAGGKF+N  Y++SGGLHGVG+SVVNALS+ L 
Sbjct: 61  DNGRGIPVDIHP-DKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYLE 119

Query: 171 VTVARQNTIFSQKFSRG 187
           V V ++  I++QK+ +G
Sbjct: 120 VEVHQKGKIYTQKYEKG 136


>gi|302746262|gb|ADL62721.1| GyrB [Morganella morganii subsp. morganii]
          Length = 388

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 141/399 (35%), Positives = 215/399 (53%), Gaps = 16/399 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS++L + + R   +  Q +  G P   L    +  +K GTR+
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQIYRHGEPQDRLTVVGET-DKTGTRV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P    F  +  F    L K  +  ++L+  V       ++  E       + F++ G
Sbjct: 60  RFWPSMDTFKGETEFQYDILAKRLRELSFLNSGVSIRLIDKRDGKE-------DHFHYEG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K +++     ++ I + +F   TEK       VE ++ W +     +  + N I   +
Sbjct: 113 GIKAFVEYLSRAKTSIHNNVFYFSTEKDDI---GVEISMQWNDSFQENVYCFTNNIPQRD 169

Query: 327 GGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GG H +G R A+TR +  Y E      K  +S   DD     V ++SV + +P+F+ QTK
Sbjct: 170 GGAHLAGFRAAMTRTLNSYIEKEGLNKKSKVSTTGDDAREGLVAVISVKVPDPKFSSQTK 229

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTA 443
            KLVS + +  VE  + +    YL +NP +   ++  +I+ +  R   R+ R    RK A
Sbjct: 230 DKLVSSEVKTAVETLMNEKLSEYLDENPNDTKIIVGKIIDAARAREAARRAREMTRRKGA 289

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A 
Sbjct: 290 LDLAGLPGKLADCQERDPAFSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 349

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIM 541
            +K+  +Q++  L+ ALGC   R +Y  + LRY  +IIM
Sbjct: 350 FDKMLASQEVATLITALGCGIGRDEYNPDKLRYHSIIIM 388


>gi|68445338|dbj|BAE03170.1| DNA gyrase subunit B [actinobacterium Aac-15]
          Length = 399

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 127/401 (31%), Positives = 211/401 (52%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGV +SVVNALS  L V V  +  +++Q + RG P + L +  +  ++ G
Sbjct: 1   GGGYAVSGGLHGVCVSVVNALSMRLTVAVRTEGHLWTQTYLRGEPTAVLAQ-GEAVSETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T + F  D ++F     ++   L +  Q  A+L+  +      ++ E  ++ G P    +
Sbjct: 60  TTVXFWADDEVFETT-AYNFETLSRRFQEMAFLNRGLTIELIDERPEYKDEEGNPASVRY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG+  +++     +  +          +    R   E ++ W  +    + ++ N I
Sbjct: 119 KYDGGISDFVRYINAAKGELVHAQVIEFGSEDVERRIAAEVSLQWNNQYSESVYTFANGI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
            T +GGTHE G R ALT  + +YA+  Q   ++  ++  +D+    V I+SV + EP+F 
Sbjct: 179 NTPDGGTHEEGFRSALTNVVNRYAKDKQLLKEKDDNLSGEDIREGLVAIISVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTK KL + +A+  V+    +    +  +NP EA  ++   I+ +  R+  RK RE+ R
Sbjct: 239 GQTKAKLGNTEARTFVQKITYEAIADWFDRNPNEAKDIVRKSIQAATARIAARKARELTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +   + LPGKLADC        E+F+VEGDSAGGSAKQ R+   QA++P+RGKILNV
Sbjct: 299 RKGLLESMALPGKLADCQSTNPAECEIFVVEGDSAGGSAKQGRDPRTQAIMPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +K+  N ++  L+ ALG      +    LRY K+++
Sbjct: 359 EKARIDKVLQNTEVQGLISALGTGIHDHFDVSKLRYHKIVL 399


>gi|188529799|gb|ACD62585.1| GyrB [Micromonospora aurantiaca]
          Length = 393

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 123/399 (30%), Positives = 206/399 (51%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V + +   ++ Q++    P    +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQQYHHSKPTPLEK--GEATDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PDP +F     FD   + +  Q  A+L+  +      ++   ++ G   +  F+
Sbjct: 59  SAVSFWPDPDVFETV-DFDFHTIYRRLQEMAFLTRGLTIHLLDERVPEDEDGKTREVTFH 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    ++S I   +     E+ G    +VE A+ W E     + ++ N I 
Sbjct: 118 YEGGIADFVRHLNASKSPIHKTVVEFGAEETG---MSVEIAMQWNESYGESVYTFANNIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISI-ISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +       +D+      I+SV + +P+F GQ
Sbjct: 175 THEGGTHEEGFRAALTSVVNRYGAEKKLLKGDERLSGEDIREGLAAIISVKLTDPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    +    +  +NP EA  +++            ++ ++   RK
Sbjct: 235 TKTKLGNTPVKGFVQRVCNESLVDWFDRNPAEAKIIIQKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY K+++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDIEKLRYHKIVL 393


>gi|324039422|dbj|BAJ78464.1| DNA gyrase subunit B [Alcanivorax sp. K3-3]
 gi|324039424|dbj|BAJ78465.1| DNA gyrase subunit B [Alcanivorax sp. K3-4]
          Length = 393

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 152/405 (37%), Positives = 221/405 (54%), Gaps = 18/405 (4%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D++TY++SGGLHGVG+SVVNALS+EL +T+ R   +  Q +  G+P  PLE      +  
Sbjct: 1   DDNTYKVSGGLHGVGVSVVNALSEELKMTIRRNGQVHEQVYRHGVPDKPLEVVGNT-DSS 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT I FRP  + F +   F    L K  +  ++L+  V+     ++   E       E F
Sbjct: 60  GTSIHFRPSAETFSNI-KFHYDILAKRLRELSFLNSGVRIHLKDERSGEE-------EVF 111

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
            + GGL  ++     N++ ++       + E+ G     VE A+ W +     I  + N 
Sbjct: 112 EYEGGLSAFVSYLNVNKTPLNQVFHFQYEREEDGI---AVEVAMQWNDSYQESIFCFTNN 168

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R ALTR +  Y E      K   +   DD       ++SV + +P+F
Sbjct: 169 IPQRDGGTHLAGFRGALTRTLNNYMEKEGLLKKEKANPSGDDAREGLTAVISVKVPDPKF 228

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REV 438
           + QTK KLVS + +  VE  + + F  YL++NP EA  + + +I+ +  R   RK     
Sbjct: 229 SSQTKDKLVSSEVKGAVEQTMGELFQDYLLENPGEAKAITQKIIDAARARDAARKAREMT 288

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC Q     +EL+IVEGDSAGGSAKQ R+R NQA+LPL+GKILN
Sbjct: 289 RRKGALDIAGLPGKLADCQQKDPAQSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILN 348

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMT 542
           V  A  +K+ ++Q++  L+ ALGC         E LRY ++IIMT
Sbjct: 349 VEKARFDKMLSSQEVGTLITALGCGIGRDEYNVEKLRYHRIIIMT 393


>gi|90903300|gb|ABE02215.1| gyrase B [Mycobacterium tuberculosis H37Rv]
          Length = 424

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 137/429 (31%), Positives = 214/429 (49%), Gaps = 35/429 (8%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKF +  Y ISGGLHGVG+SVVNALS  L V + R    +SQ + +  PL    K+    
Sbjct: 2   GKFGSDAYAISGGLHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLGL--KQGAPT 59

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY----- 255
            K G+ + F  DP +F     +D   + +  Q  A+L+  +    + ++   ++      
Sbjct: 60  KKTGSTVRFWADPAVFEPT-EYDFEAVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVV 118

Query: 256 --------------------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
                                  +   F++PGG   +++     ++ I S I     +  
Sbjct: 119 SDVAEAPKSASERAAESTAPHKVKSRTFHYPGGPVDFVKHINRTKNAIHSSIVDFSGKGT 178

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W       + ++ NTI T EGG HE G R ALT  + KYA+  +    
Sbjct: 179 GH---EVEIAMQWNAGYSESVHTFANTINTHEGGRHEEGFRSALTSVVNKYAKDRKLLKD 235

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
           +  ++  DD+      ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP
Sbjct: 236 KDPNLTGDDIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANP 295

Query: 413 IEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
            +A  ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEG
Sbjct: 296 TDAKVVVNKAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEG 355

Query: 472 DSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE 531
           DSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++   
Sbjct: 356 DSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIG 415

Query: 532 DLRYEKVII 540
            LRY K+++
Sbjct: 416 KLRYHKIVL 424


>gi|148536440|gb|ABQ85772.1| DNA gyrase subunit B [Vibrio mimicus]
          Length = 391

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 146/401 (36%), Positives = 226/401 (56%), Gaps = 15/401 (3%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G+P +PL    +   + GT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLSVVGET-ERTGTT 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F P  + F +   F    L K  +  ++L+  V    + ++E  +K      + F + 
Sbjct: 60  VRFWPSAQTFTNI-EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYE 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG++ ++     N++ I  ++F    E++     +VE A+ W +     I  + N I   
Sbjct: 113 GGIQAFVTHLNRNKTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQR 170

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R ALTR +  Y +      K   +   DD       ++SV + +P+F+ QT
Sbjct: 171 DGGTHLAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQT 230

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKT 442
           K KLVS + +  VE+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK 
Sbjct: 231 KDKLVSSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKG 290

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 291 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 350

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
             +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 351 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 391


>gi|159146564|gb|ABW90726.1| DNA gyrase beta subunit [Vibrio vulnificus]
          Length = 395

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 147/405 (36%), Positives = 226/405 (55%), Gaps = 15/405 (3%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD+++Y++SGGLHGVG+SVVNALS+++ +T+ R     SQ +  G+P +PL         
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSEKVLLTIHRGGHTHSQTYRHGVPDAPLAIIGDTEK- 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT + F P  + F +   F    L K  +  ++L+  V      ++E  +K      + 
Sbjct: 60  TGTTVRFWPSAQTFTNI-EFHYDILAKRLRELSFLNSGVSIKLFDEREEDKK------DH 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           F + GG++ ++     N++ I  ++F   +E++      VE A+ W +     I  + N 
Sbjct: 113 FMYEGGIQAFVTHLNRNKTPIHEKVFHFNSERED--GIAVEVAMQWNDGFQENIYCFTNN 170

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R ALTR +  Y +      K   +   DD       ++SV + +P+F
Sbjct: 171 IPQRDGGTHLAGFRAALTRTLNSYMDKEGYSKKAKTATSGDDAREGLTAVVSVKVPDPKF 230

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EV 438
           + QTK KLVS + +  VE+ + D  + +L ++P EA  +   +I+ +  R   RK R   
Sbjct: 231 SSQTKDKLVSSEVKSAVESFMADKLNDFLAEHPSEAKTVCSKIIDAARAREAARKAREMT 290

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILN
Sbjct: 291 RRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILN 350

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
           V  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 351 VEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 395


>gi|285804192|gb|ADC35604.1| DNA topoisomerase IV subunit B [Geobacillus toebii]
          Length = 395

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 137/407 (33%), Positives = 211/407 (51%), Gaps = 20/407 (4%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
               Y+ SGGLHGVG SV NALS+ L VT+ R   I+ Q+F  G       +K  + NK 
Sbjct: 1   GQGGYKTSGGLHGVGASVANALSEWLVVTIYRDGFIYQQRFEHGGKPVTTLEKIGITNKT 60

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT I F+PDP IF     F+   L +  +  A+L   +K     ++          ++ F
Sbjct: 61  GTIIQFKPDPTIFSTTT-FNYETLSERLRESAFLLKGLKIELIDER-------TGMRDVF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTI 322
           Y+  G++ +++   E++ ++   +   + E+ G     VE+A  + +   E   S+ N +
Sbjct: 113 YYENGIEAFVEYLNEDKDVLRPVV-YFEGEQNGI---EVEFAFQFNDGYSENVLSFVNNV 168

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--E 378
            T +GGTHE+G + A+TR   +YA       ++  ++   D+      I+SV I E   +
Sbjct: 169 RTKDGGTHEAGAKTAMTRVFNEYARKMGLLKEKDKNLEGSDIREGLSAIISVRIPEHLLQ 228

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
           F GQTK KL + +A+  V+  + +   ++L +NP  +T L++  I   + R   RK RE 
Sbjct: 229 FEGQTKGKLGTSEARSAVDAVVSEHLTYFLQENPDISTMLIKKAIRAYQAREAARKAREE 288

Query: 439 NRKTAIRK---LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
            R    RK     L GKL           EL++VEGDSAGGSAKQ R+R  QAVLPLRGK
Sbjct: 289 ARSGKKRKGKETVLSGKLTPAQSRNPKKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGK 348

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           ++N   A    I  N++I  ++ A+G      +  +D+ Y+KVIIMT
Sbjct: 349 VINTEKAKLADILKNEEINTIIHAIGGGVGPDFSLDDINYDKVIIMT 395


>gi|29652691|gb|AAO87315.1| DNA gyrase B [Listeria monocytogenes]
          Length = 177

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 84/178 (47%), Positives = 112/178 (62%), Gaps = 2/178 (1%)

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I  
Sbjct: 2   PGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILA 61

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ M  L++ 
Sbjct: 62  NEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDA 121

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
            ++++  PPL++I  G +  Y + +   +  L      G  K  I R+KGLGEM   Q
Sbjct: 122 GYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYKGLGEMNPEQ 177


>gi|308153118|dbj|BAJ22148.1| DNA gyrase subunit B [Kutzneria viridogrisea]
          Length = 403

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 132/408 (32%), Positives = 217/408 (53%), Gaps = 17/408 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVG+SVVNAL+  + V + R    + Q++ R  P   LEK     +  G
Sbjct: 1   SDSYAVSGGLHGVGVSVVNALATRMEVEICRDGFQWRQRYERSAPAHALEKLAPT-DSTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------ 258
           T IT+  DP IF     ++   + +  Q  A+L+  +      ++   E           
Sbjct: 60  TVITYWADPDIFETTV-YNLETVARRLQEMAFLNKGLTIVLRDERVADEDTEADAEGQVA 118

Query: 259 --EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
             +++ F++PGGL+ +++   ++R  +  ++     +        VE A+ W       +
Sbjct: 119 AIKEQVFHYPGGLEDFVRHINKSREELHKKVIAFDAKGDD---LEVEIAMQWNTGYSESV 175

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVF 373
            ++ NTI T EGGTHE G R ALTR + +YA+  +  +    ++  +D+      I+SV 
Sbjct: 176 YTFANTINTHEGGTHEEGFRAALTRVVNEYAKDKKLLKEKDGNLSGEDIREGLAAIISVK 235

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           ++EP+F GQTKTKL +  A+  V+ A  +    +  ++P EA  ++   +  ++ RL  R
Sbjct: 236 LKEPQFEGQTKTKLGNTSAKSFVQKACNEWLADWFDRHPAEAKIIISKAVSSAQARLAAR 295

Query: 434 KQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           K RE V RK A+    LPGKL DC        E++IVEGDSAGGSAK+ R+   QA+LP+
Sbjct: 296 KARELVRRKGALEIGGLPGKLKDCRSTNPEECEVYIVEGDSAGGSAKEGRDSMYQAILPI 355

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           RGKI+NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 356 RGKIINVEKARIDRVLKNAEVQSMITAFGTGIHDEFDIAKLRYHKIVL 403


>gi|2196824|gb|AAB80829.1| DNA gyrase beta-subunit [Shewanella algae]
          Length = 419

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 138/405 (34%), Positives = 217/405 (53%), Gaps = 15/405 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T L   GKF+  + ++SGG HGVG+SVVNALS++L +T+ R   ++ Q +  G P 
Sbjct: 1   EVIMTVLRPLGKFEEPSKQVSGGWHGVGVSVVNALSEKLQLTIRRDGKVYEQFYKHGEPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            P+++  +  N  GT I F P  + F D   F    L K  +  ++L+  V      +++
Sbjct: 61  EPIKEIGEATN-TGTEIRFWPSQETFTD-TEFHYELLAKRIRELSFLNSGVGIRLIDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + E F++ GG+K +++    N++ ++ ++F    E+      TVE A+ W +
Sbjct: 119 N-------KYEFFHYEGGIKAFVEYLNRNKTPVNKDVFHFSQERDD--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R ALTR +  Y E      K   +   DD      
Sbjct: 170 GFQESIFCFTNNIPQRDGGTHLAGFRAALTRNLNNYMENEGFNKKGKTNATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +  + YL++NP +A  ++  +I+   
Sbjct: 230 AVVSVKVPDPKFSSQTKDKLVSSEVKGAVEQTMGEKLNDYLLENPADAKMIVGKIIDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R  +    RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR N
Sbjct: 290 AREAAREAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE 531
           QA+LPL+GKILNV  A  +K+  + ++   + ALGC         
Sbjct: 350 QAILPLKGKILNVEKARFDKMLFSLEVATFITALGCGIGLDVFYP 394


>gi|86169555|gb|ABC87017.1| DNA gyrase subunit B [Leuconostoc mesenteroides subsp. cremoris]
          Length = 393

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 146/401 (36%), Positives = 222/401 (55%), Gaps = 13/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKR 203
              Y++SGGLHGVG SVVNALS +L V V R N ++   F  G +  +     E+   +R
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTDLDVKVVRDNKVYYMDFKVGRVHTTMRTLDEEPTIER 60

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F+PD  IF +   ++   LL   +  A+L+  ++   +  +        P KE F
Sbjct: 61  GTIVHFKPDTDIFRETTTYNYKTLLTRVRELAFLNKGLRISIADKR-----LEEPIKESF 115

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTI 322
            F GG+K Y+Q   E++ +I  E    + E+ G     VE A+ +  +    + ++ N I
Sbjct: 116 NFEGGIKEYVQYLNEDKQVIFPEPVYVEGEENGI---VVEAALQYTTDIKDSLRTFANNI 172

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE+G + ALTR I  YA  +   +    S+  +D+      I+S+   +P+F 
Sbjct: 173 NTYEGGTHETGFKTALTRVINDYARKSGQIKDGAESLTGEDVREGMTAIVSIKHPDPQFE 232

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-N 439
           GQTKTKL + DA++  +    + F  ++++NP  A +++E  +   + RL  ++ RE+  
Sbjct: 233 GQTKTKLGNSDARQATDRMFSETFSRFMMENPNVARQIVEKGVLAQKARLAAKRAREMTR 292

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +++ +    LPGKLAD + N    +ELFIVEGDSAGGSAKQ RNR  QA+LP+RGKILNV
Sbjct: 293 KQSGLEIGNLPGKLADNTSNDPAISELFIVEGDSAGGSAKQGRNRVTQAILPIRGKILNV 352

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  E++  N++I  L  A+G      +  E   Y KVII
Sbjct: 353 GKASLERVLANEEIRSLFTAMGTGFGDDFNVEKANYHKVII 393


>gi|18147183|dbj|BAB83072.1| DNA gyrase subunit B [Alcanivorax sp. Can-1]
          Length = 393

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 154/405 (38%), Positives = 227/405 (56%), Gaps = 18/405 (4%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D++TY++SGGLHGVG+SVVNALS+EL +T+ R   +  Q ++ G+P  PLE      +  
Sbjct: 1   DDNTYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYNHGVPAKPLEVVG-TTDSS 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + FRP P+ F +   F    L K  +  ++L+  V+     ++   E       + F
Sbjct: 60  GTAVHFRPSPETFSNI-KFHYDILAKRLRELSFLNSGVRIHLMDERSGDE-------DVF 111

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
            + GGL  ++     N++ ++       + E+ G     VE A+ W +     I  + N 
Sbjct: 112 EYEGGLSAFVSYLNTNKTPLNQVFHFNYEREEDGI---AVEVAMQWNDSYQENIFCFTNN 168

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R ALTR +  Y +      K   S   DD       ++SV + +P+F
Sbjct: 169 IPQRDGGTHLAGFRAALTRTLNSYMDKEGFLKKEKASPSGDDAREGLTAVISVKVPDPKF 228

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REV 438
           + QTK KLVS + +  VE  + D F  YL++NP EA  +++ +I+ +  R   RK     
Sbjct: 229 SSQTKDKLVSSEVKSAVEQTMGDLFQDYLLENPGEARSIVQKIIDAARARDAARKAREMT 288

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC Q     +EL+IVEGDSAGGSAKQ R+R NQA+LPL+GKILN
Sbjct: 289 RRKGALDIAGLPGKLADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILN 348

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
           V  A  +K+ ++Q++  L+ ALGC   R +Y  E LRY ++IIMT
Sbjct: 349 VEKARFDKMLSSQEVGTLITALGCGIGRDEYNIEKLRYHRIIIMT 393


>gi|38224369|gb|AAR14133.1| DNA gyrase B subunit [Fusobacterium necrophorum subsp. necrophorum]
          Length = 403

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 143/412 (34%), Positives = 215/412 (52%), Gaps = 16/412 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRN 201
           +N  Y++SGGLHGVGISVVNALS+   V V R+  ++ QK+ RG P+  ++     +V  
Sbjct: 1   ENDDYKVSGGLHGVGISVVNALSEWTEVKVKREGNVYYQKYLRGKPVEDVKIISTLEVGE 60

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             GT +TF+PD +IF     F+   L    +  AYL+  ++      +       I +KE
Sbjct: 61  TTGTIVTFKPDIEIFETVI-FEYEVLQHRLKELAYLNRGLEINLLDCR-----NEIGKKE 114

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCN 320
            F F GG+  +L+        + S+    + + +   +  V+ A  +   ++  I S+ N
Sbjct: 115 SFQFEGGISDFLKEVTRENQTLLSKQIHIEGQAE---QVGVDIAFTYTTGQSEVIYSFVN 171

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I T EGG+H +G R  LT+ I    +      ++   +           I+SV +  P+
Sbjct: 172 NINTTEGGSHVTGFRTCLTKVINDIGKSQGFLKEKDGKLQEATFGKELWLIISVKVPPPQ 231

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
           F GQTKTKL + +    V   L      +L  NP +   ++E ++   + R   ++ RE 
Sbjct: 232 FEGQTKTKLGNSEVNGIVNTVLSTDLKIFLEDNPNDTKLIIEKILSSKKAREAAQRAREA 291

Query: 439 NRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
             + + +    LPGKLADCS       E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKIL
Sbjct: 292 VLRKSVLEVGSLPGKLADCSSKKPEECEIFLVEGDSAGGSAKQGRDRYFQAILPLKGKIL 351

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDG 548
           NV  AG  K   + +I  +V A G     +  + E LRY K+I+MTDADVDG
Sbjct: 352 NVEKAGLHKALESDEIRAMVTAFGTNIGEESFDLEKLRYGKIILMTDADVDG 403


>gi|110612667|gb|ABG78296.1| GyrB [uncultured bacterium]
          Length = 402

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 150/411 (36%), Positives = 226/411 (54%), Gaps = 20/411 (4%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD   Y++SGGLHGVG+SVVNALS+ L V V R+  I++Q + RG P  P+E   K ++ 
Sbjct: 2   FDKGAYKVSGGLHGVGVSVVNALSENLKVEVYREGKIWTQSYKRGKPEGPVEATGKTQDH 61

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GTR+TF+PD  IF +   F    L    +  A+L+   K     +          +K  
Sbjct: 62  -GTRVTFKPDADIFNEI-KFSYDVLSNRLREIAFLNAGAKITIIDE-------HDDKKHT 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNT 321
           F++ GG+  +++    N+  +  E  +    K+ T    V++AI + E+  E   S+ N 
Sbjct: 113 FHYEGGISQFVRFLNANKKPLHVEPISSSKTKEDT---VVDFAIQYNEDYSENVFSFVND 169

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEF 379
           I T +GGTH +G R ALTR I  Y +     +  +     DD+      ++S+ I  P+F
Sbjct: 170 IKTPDGGTHLAGFRSALTRVINDYIKKYDLLKGKNFAVTGDDVREGLCAVISIKIPNPQF 229

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN 439
            GQTKTKL + + +  V++ + +    +  +NP  A  + +  I  +E R   +K R++ 
Sbjct: 230 EGQTKTKLGNQEVEGIVKSIVGESLGIFFEENPATAKAISQKAIAAAEAREAAKKARDLT 289

Query: 440 RKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
           R+   +    LPGKLADC +     +ELFIVEGDSAGGSAKQ R+R  QA+LP++GKILN
Sbjct: 290 RRKGVLDGSSLPGKLADCQEREPERSELFIVEGDSAGGSAKQGRDRVFQAILPIKGKILN 349

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT----RSQYREEDLRYEKVIIMTDAD 545
           V  A   KI +N+++  L+ A+G          ++ E LRY K+ IMTDAD
Sbjct: 350 VEKARLVKILSNEEVRTLIAAIGTGIGSEGDEGFKIEKLRYHKLSIMTDAD 400


>gi|126035360|gb|ABN72433.1| gyrase B subunit [Vibrio parahaemolyticus AQ4037]
          Length = 395

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 150/405 (37%), Positives = 231/405 (57%), Gaps = 15/405 (3%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DK 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT+I F P  + F +   F    L K  +  ++L+  V      ++E        +++ 
Sbjct: 60  TGTQIRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KQDH 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           F + GG++ ++Q    N++ I  +IF    E++     +VE A+ W +     I  + N 
Sbjct: 113 FMYEGGIQAFVQHLNTNKTPIIEKIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNN 170

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F
Sbjct: 171 IPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKF 230

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EV 438
           + QTK KLVS + +  VE+A+ +    +LV+NP EA  +   +I+ +  R   RK R   
Sbjct: 231 SSQTKDKLVSSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMT 290

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILN
Sbjct: 291 RRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILN 350

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
           V  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II+T
Sbjct: 351 VEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIILT 395


>gi|295979491|dbj|BAJ07418.1| DNA gyrase subunit B [Planktothrix agardhii]
 gi|295979493|dbj|BAJ07419.1| DNA gyrase subunit B [Planktothrix agardhii]
 gi|295979495|dbj|BAJ07420.1| DNA gyrase subunit B [Planktothrix agardhii]
 gi|295979497|dbj|BAJ07421.1| DNA gyrase subunit B [Planktothrix agardhii]
 gi|295979503|dbj|BAJ07424.1| DNA gyrase subunit B [Planktothrix agardhii]
 gi|295979505|dbj|BAJ07425.1| DNA gyrase subunit B [Planktothrix agardhii]
 gi|295979507|dbj|BAJ07426.1| DNA gyrase subunit B [Planktothrix agardhii]
 gi|295979509|dbj|BAJ07427.1| DNA gyrase subunit B [Planktothrix agardhii]
          Length = 352

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 113/339 (33%), Positives = 173/339 (51%), Gaps = 4/339 (1%)

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AGY   IE+  + NG +TV D+GRGIPV+ H K   KS LE +LT LHAGGKF    Y++
Sbjct: 1   AGYCTHIEIDFNANGSVTVTDDGRGIPVDTHSK-TGKSALETVLTVLHAGGKFGGGGYKV 59

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS+ L VTV R    +SQ+F RG P + L  K     + GT ++F 
Sbjct: 60  SGGLHGVGVSVVNALSEWLEVTVFRDRKEYSQRFERGTPATELTSKPIKEARTGTSVSFL 119

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PD  IF     FD   +    +  AYL+  VK   +  +        P  E + + GG++
Sbjct: 120 PDTSIFTTGIEFDCDTIASRLRELAYLNAGVKITLTDSRLELLNRENPRIETYCYEGGIR 179

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330
            Y+     ++  +  +I     E+    +  V         +  +  + N I T +GGTH
Sbjct: 180 EYIAYMNNDKQPLHEDIIYTCGERSNV-QIEVALQWCTDAYSDTVLGFANNIRTIDGGTH 238

Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             GL+  LTR +   A      +    ++  +++      ++S  + +PEF GQTKT+L 
Sbjct: 239 LEGLKTVLTRTLNAIARKRNKLKEGEANLGGENIREGLTAVISAKVPDPEFEGQTKTRLG 298

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
           + + +  V++ + +    YL  NP  A  ++E  I+  +
Sbjct: 299 NPEVRGIVDSLVGEALTEYLEFNPGIADAIIEKAIQAFK 337


>gi|86169585|gb|ABC87032.1| DNA gyrase subunit B [Weissella kandleri]
          Length = 395

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 144/403 (35%), Positives = 215/403 (53%), Gaps = 15/403 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK--EKVRNK 202
              Y++SGGLHGVG SVVNALS +L V V R N  +  KF RG  +  + +   E    +
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTDLDVLVVRDNQGYEMKFERGRTVQTITEVSAESAPVE 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
           RGT + F PD  IF +   FDA  L+   +  A+L+  +K  ++  +   E+        
Sbjct: 61  RGTVVHFVPDADIFQETTVFDAKVLIDRVRELAFLNKGLKISFTDKRVEPEETHT----- 115

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCN 320
           FY+ GGLK Y++    N++++  +    +  +       VE A+ + ++       S+ N
Sbjct: 116 FYYEGGLKEYVKYLNRNKTVLFEDPVYVEGTENNI---EVEVALQYTDDYRSNVLLSFTN 172

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPE 378
            I T EGGTHE+G + ALTR I  YA+  +  +        DDL      I+SV   +P 
Sbjct: 173 NINTWEGGTHETGFKTALTRVINDYAKQNKMLKEGDDGLTIDDLREGLTAIISVKHPDPL 232

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
           F GQTK KL S DA+  V     + F  ++++NP+ A +++E      + R+  ++ RE 
Sbjct: 233 FEGQTKAKLGSSDARTAVYRMFNETFKRFIMENPVVAKQIVEKGFSAQKARMAAKRARED 292

Query: 439 NRKT-AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
           +RK   +    LPGKLA+ +      +ELFIVEGDSAGGSAKQ R R  QA+LP+RGKIL
Sbjct: 293 SRKKTGLEIANLPGKLANNTSKDPEISELFIVEGDSAGGSAKQGRERLTQAILPIRGKIL 352

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           NV  A  + I  N++I  L  A+G     ++    + Y K++I
Sbjct: 353 NVEKAQMKTILANEEIRSLFTAMGTGFGDEFDISKVNYHKLVI 395


>gi|33590310|gb|AAQ22695.1| DNA gyrase subunit B [Photorhabdus asymbiotica subsp. australis]
          Length = 382

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 143/393 (36%), Positives = 216/393 (54%), Gaps = 16/393 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS++L + + R   +  Q +  G+P SPL+   +   + GTR+ F 
Sbjct: 1   SGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKIVGET-EQTGTRVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P    F +   F    L K  +  ++L+  V       +   E       + F++ GG+K
Sbjct: 60  PSMDTFRNNTEFQHDILAKRLRELSFLNSGVSIRLIDKRTNTE-------DHFHYEGGIK 112

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I   +F   TEK G     VE ++ W +     I  + N I   +GGT
Sbjct: 113 AFVEFLNKNKTPIHPNVFYFSTEKDGI---GVEISMQWNDGFQENIYCFTNNIPQRDGGT 169

Query: 330 HESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R A+TR +  Y +      K  +S   DD     V ++SV + +P+F+ QTK KL
Sbjct: 170 HLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKL 229

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRK 446
           VS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+  
Sbjct: 230 VSSEVKTAVETLMNEKLVEYLLENPNDAKTVVSKIIDAARAREAARKAREMTRRKGALDL 289

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 290 AGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 349

Query: 507 IRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
           + ++Q++  L+ ALGC   R +Y  + LRY  +
Sbjct: 350 MLSSQEVATLITALGCGIGRDEYNPDKLRYHSI 382


>gi|229891674|sp|P0C9C0|TOP2_ASFP4 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
          Length = 1192

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 111/650 (17%), Positives = 210/650 (32%), Gaps = 88/650 (13%)

Query: 72  KALHHLFSEVIDNAMDEVIAGYANL-----IEVSLDGNGFLTVVDNGRGIPVENHPKFP- 125
            AL  +F E+I NA D   A ++       I++S D  G  +  ++G GIP+  H +   
Sbjct: 52  PALLKIFDEIIVNATDHERACHSKTKKVTYIKISFDK-GVFSCENDGPGIPIAKHEQASL 110

Query: 126 ----NKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFS 181
               +    E+      AG   + +   I GG +GVG+ +    S    +T A     + 
Sbjct: 111 IAKRDVYVPEVASCHFLAGTNINKAKDCIKGGTNGVGLKLAMVHSQWAILTTADGAQKYV 170

Query: 182 QKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD-------KAGFDAARLLKMTQSK 234
           Q  ++ + +         R    TRI   P  +  G        +    +A +       
Sbjct: 171 QHINQRLDIIEPPTITPSREM-FTRIELMPVYQELGYAEPLSETEQADLSAWIYLRACQC 229

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           A   G+  T +  DK       +   + +             L +    +    T K + 
Sbjct: 230 AAYVGKGTTIYYNDKPCRTGSVMALAKMY------------TLLSAPNSTIHTATIKADA 277

Query: 295 KGTHRGTVEWAIAWCEENPEITSYCNTI-LTDEGGTHESGLRVALTRGIKKYAELTQNKR 353
           K      ++ A     +  +         +    G H + L+  +   + K  + T   +
Sbjct: 278 KPYSLHPLQVAAVVSPKFKKFEHVSVINGVNCVKGEHVTFLKKTINEMVVKKFQQTIKDK 337

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
                  D   +   ++   I   E+ GQ K +L   +    V          +L     
Sbjct: 338 NRKTTLRDSCSNIFIVIVGSIPGIEWTGQRKDELSIAEN---VFKTHYSIPSSFLTSMTK 394

Query: 414 EATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
               +L   I +                     +    +  +     A    L   EGDS
Sbjct: 395 SIVDILLQSISK-------------KDNHKQVDVDKYTRARNAGGKRAQDCMLLAAEGDS 441

Query: 474 A----------GGSAKQARNRSNQAVLPLRGKILNVAS--------------AGSEKIRN 509
           A          G S     +     ++ L G I+N                   +E++ N
Sbjct: 442 ALSLLRTGLTLGKSNPSGPSFDFCGMISLGGVIMNACKKVTNITTDSGETIMVRNEQLTN 501

Query: 510 NQQIMDLVQALGCRTRSQYREE----DLRYEKVIIMTDADVDGAH-IASLLLTFFYQEMY 564
           N+ +  +VQ LG      Y+ +     LRY  ++   D D+DG   I  LLL +F+    
Sbjct: 502 NKVLQGIVQVLGLDFNCHYKTQEERAKLRYGCIVACVDQDLDGCGKILGLLLAYFHLFWP 561

Query: 565 DLIEQKHLFLISPPLFRITQGTKS--VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
            LI    +  +  PL R+ +  K+  V  + E+      ++          +  +KGL  
Sbjct: 562 QLIIHGFVKRLLTPLIRVYEKGKTVPVEFYYEQEFDAWAKKQTSLANH--TVKYYKGLAA 619

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
               ++K      +        ++         ++  +   G +++ R +
Sbjct: 620 HDTHEVKSMFKHFDNMVYT-FTLDD------SAKELFHIYFGGESELRKR 662


>gi|188529781|gb|ACD62576.1| GyrB [Micromonospora sp. 88]
          Length = 393

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 126/399 (31%), Positives = 208/399 (52%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V + +   ++ QK+    P +  +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKSGFVWRQKYHNSKPDALEK--GETTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PDP +F     FD   + +  Q  A+L+  +      ++    + G P +  FY
Sbjct: 59  SAVSFWPDPDVFETT-DFDFQTIYRRLQEMAFLNRALSIHLLDERVAEGEEGKPREVTFY 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    +++ +   +     E++G    +VE A+ W E     + ++ NT  
Sbjct: 118 YEGGIADFVRHLNASKNPMHKTVVEFAAEEEG---MSVEIAMQWNESYGESVYTFANTSN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQ
Sbjct: 175 THEGGTHEEGFRAALTSVVNRYGADKKLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    D    +  +NP EA  +++            ++ ++   RK
Sbjct: 235 TKTKLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKTIIQKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY KV++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDMEKLRYHKVVL 393


>gi|6729223|dbj|BAA89733.1| DNA gyrase subunit B [Micromonospora olivasterospora]
          Length = 392

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 125/399 (31%), Positives = 207/399 (51%), Gaps = 10/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V + +   ++ Q+++   P    +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMSVEIHKSGHVWRQQYTNSKPTPLEK--GETTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PDP +F     FD   + +  Q  A+L+  V      ++   E    P +  F 
Sbjct: 59  SAVSFWPDPDVFETV-DFDFQTIYRRLQEMAFLNRGVTIHLLDERFQDEDG-KPREVTFC 116

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    +++ I   +     E++G    +VE A+ W E     + ++ NTI 
Sbjct: 117 YQGGIADFVRHLNASKNPIHRTVVEFGAEEEG---MSVEIAMQWNESYGESVYTFANTIN 173

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQ
Sbjct: 174 THEGGTHEEGFRAALTSVVNRYGTERKLLKGDEKLSGEDIREGLATIISVKLANPQFEGQ 233

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    +    +  +NP EA  +++            ++ ++   RK
Sbjct: 234 TKTKLGNTPVKSFVQRVCNEWLVDWFDRNPTEAKVIIQKASQAARARIAAQQARKLARRK 293

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 294 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 353

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY K+++
Sbjct: 354 ARIDRVLKNNEVQALITALGTGIHDDFDIEKLRYHKIVL 392


>gi|188529736|gb|ACD62555.1| GyrB [Micromonospora sp. 61]
          Length = 393

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 127/399 (31%), Positives = 209/399 (52%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V + +   ++ QK+    P +  +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKSGFVWRQKYHNSKPDALEK--GETTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PDP +F     FD   + +  Q  A+L+  +      ++    + G P +  FY
Sbjct: 59  SAVSFWPDPDVFETT-DFDFQTIYRRLQEMAFLNRALSIHLLDERVAEGEEGKPREVTFY 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    +++ +   +     E++G    +VE A+ W E     + ++ NTI 
Sbjct: 118 YEGGIADFVRHLNASKNPMHKTVVEFAAEEEG---MSVEIAMQWNESYGESVYTFANTIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQ
Sbjct: 175 THEGGTHEEGFRAALTSVVNRYGADKKLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    D    +  +NP EA  +++            ++ ++   RK
Sbjct: 235 TKTKLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKTIIQKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY KV++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDMEKLRYHKVVL 393


>gi|6729241|dbj|BAA89742.1| DNA gyrase subunit B [Mycobacterium intracellulare]
 gi|90654491|gb|ABD96032.1| gyrase B [Mycobacterium indicus pranii]
 gi|308153184|dbj|BAJ22181.1| DNA gyrase subunit B [Mycobacterium intracellulare]
 gi|308153186|dbj|BAJ22182.1| DNA gyrase subunit B [Mycobacterium intracellulare]
 gi|308153188|dbj|BAJ22183.1| DNA gyrase subunit B [Mycobacterium intracellulare]
 gi|308153202|dbj|BAJ22190.1| DNA gyrase subunit B [Mycobacterium intracellulare]
          Length = 421

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 139/427 (32%), Positives = 214/427 (50%), Gaps = 35/427 (8%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
            +NS Y +SGGLHGVG+SVVNALS  L V +AR    +SQ +   +P +   K+ +   +
Sbjct: 1   GENSGYNVSGGLHGVGVSVVNALSTRLEVDIARDGYEWSQFYDHAVPGTL--KQGEATKR 58

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-------- 254
            GT I F  DP IF     +D   + +  Q  A+L+  +    + ++   E+        
Sbjct: 59  TGTTIRFWADPDIFETT-EYDFETVARRLQEMAFLNKGLTINLTDERVSNEEVVDEVVSD 117

Query: 255 -----------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                                +   F++PGGL  +++     +S I   I     +  G 
Sbjct: 118 TADAPKSAQEKAAESTAPHKVKHRTFHYPGGLVDFVKHINRTKSPIQQSIIDFDGKGPGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRA 354
               VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +     + 
Sbjct: 178 ---EVEIAMQWNGGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
            ++  DD+      ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP +
Sbjct: 235 PNLTGDDIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPAD 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDS
Sbjct: 295 AKVVVNKAVSSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    L
Sbjct: 355 AGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDITKL 414

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 415 RYHKIVL 421


>gi|38224440|gb|AAR14138.1| DNA gyrase B subunit [Fusobacterium necrophorum subsp.
           funduliforme]
          Length = 402

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 140/411 (34%), Positives = 209/411 (50%), Gaps = 15/411 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRN 201
           +N  Y++SGGLHGVGISVVNALS+   V V R+  ++ QK+ RG P+  ++     +   
Sbjct: 1   ENDNYKVSGGLHGVGISVVNALSEWTEVKVKREGNVYYQKYLRGKPIEDVKIISALEAGE 60

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             GT +TF+PD +IF     F+   L    +  AYL+  ++      +       I +KE
Sbjct: 61  TTGTIVTFKPDIEIFETVI-FEYEVLQHRLKELAYLNRGLEINLLDCR-----NEIGKKE 114

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCN 320
            F F GG+  +L+   +    + S+    + + +   +  V+ A  +   ++  I S+ N
Sbjct: 115 SFQFEGGISDFLKEVTQENQTLLSKQIHIEGQAE---QVGVDIAFTYTTGQSEIIYSFVN 171

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEF 379
            I T EGG+H +G R  LT+ I  + +     K                        P+F
Sbjct: 172 NINTTEGGSHVTGFRTCLTKVIIDFGKNPGFLKEKEENSKRRHSGRNCCYYFGQSPHPQF 231

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN 439
            GQTKTKL + +    V   L      +L  NP +   ++E ++   + R   ++ RE  
Sbjct: 232 EGQTKTKLGNSEVSGIVNTVLSTDLKIFLEDNPNDTKLIIEKILNSKKAREAAQRAREAV 291

Query: 440 RKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +    LPGKLADCS       E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILN
Sbjct: 292 LRKSVLEVGSLPGKLADCSSKKPEECEIFLVEGDSAGGSAKQGRDRYFQAILPLKGKILN 351

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDG 548
           V  AG  K   + +I  +V A G     +  + E LRY K+I+MTDADVDG
Sbjct: 352 VEKAGLHKALESDEIRAMVTAFGTNIGEESFDLEKLRYGKIILMTDADVDG 402


>gi|146325103|gb|ABQ22200.1| DNA gyrase subunit B [Vibrio alginolyticus]
          Length = 393

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 147/403 (36%), Positives = 228/403 (56%), Gaps = 15/403 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+I F P  + F +   F    L K  +  ++L+  V      ++E        + + F 
Sbjct: 60  TQIRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KHDHFM 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG++ ++     N++ I  +IF   +E++     +VE A+ W +     I  + N I 
Sbjct: 113 YEGGIQAFVDHLNTNKTPIIEKIFHFNSERED--GISVEVAMQWNDGFQENIFCFTNNIP 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ 
Sbjct: 171 QRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSS 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE+A+ +    +L++NP EA  +   +I+ +  R   RK R    R
Sbjct: 231 QTKDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 291 KGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 351 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 393


>gi|308153176|dbj|BAJ22177.1| DNA gyrase subunit B [Mycobacterium avium]
          Length = 421

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 138/427 (32%), Positives = 214/427 (50%), Gaps = 35/427 (8%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
            +NS Y +SGGLHGVG+SVVNALS  L V +AR    +SQ +   +P +   K+ +   +
Sbjct: 1   GENSGYNVSGGLHGVGVSVVNALSTRLEVNIARDGYKWSQYYDHAVPGTL--KQGEATKR 58

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-------- 254
            GT I F  DP IF     +D   + +  Q  A+L+  +    + ++   E+        
Sbjct: 59  TGTTIRFWADPDIFETT-EYDFETVARRLQEMAFLNKGLTINLTDERVTNEEVVDEVVSD 117

Query: 255 -----------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                                +   F++PGGL  +++     ++ I   I     +  G 
Sbjct: 118 TADAPKSAQEKAAESAAPHKVKHRTFHYPGGLVDFVKHINRTKNPIHQSIIDFGGKGPGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRA 354
               VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +     + 
Sbjct: 178 ---EVEIAMQWNGGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
            ++  DD+      ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP +
Sbjct: 235 PNLTGDDIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPAD 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDS
Sbjct: 295 AKVIVNKAVSSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    L
Sbjct: 355 AGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDITKL 414

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 415 RYHKIVL 421


>gi|111380378|gb|ABH09622.1| DNA gyrase subunit B [Photobacterium leiognathi subsp.
           mandapamensis]
          Length = 390

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 143/400 (35%), Positives = 226/400 (56%), Gaps = 15/400 (3%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS+++ +T+ R   I  Q +  G+P +PL       ++ GT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSEKVELTIKRGGHIHQQVYRHGVPDAPLAVIGDT-DETGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           RI F P  + F +   F    L K  +  ++L+  V    + ++E        + + F +
Sbjct: 60  RIRFWPSEETFTNI-EFQYEILAKRLRELSFLNSGVSIKLNDERE------EGKHDHFMY 112

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG++ +++    N++ I  ++F   +E+      +VE A+ W +     I  + N I  
Sbjct: 113 EGGIQAFVEHLNRNKTPIHPKVFHFDSERDD--GISVEVAMQWNDGFQESIFCFTNNIPQ 170

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ Q
Sbjct: 171 RDGGTHLAGFRGALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRK 441
           TK KLVS + +  VE+A+ +    +L++NP +A  +   +I+ S  R   RK R    RK
Sbjct: 231 TKDKLVSSEVKAAVESAMNEKLAEFLLENPADAKTVCTKIIDASRAREAARKAREMTRRK 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  
Sbjct: 291 GALDLAGLPGKLADCQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
           A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +II
Sbjct: 351 ARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNIII 390


>gi|308153134|dbj|BAJ22156.1| DNA gyrase subunit B [Pseudonocardia thermophila]
          Length = 403

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 133/409 (32%), Positives = 215/409 (52%), Gaps = 20/409 (4%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
            +Y +SGGLHGVG+SVVNALS  L V +      + Q + R +P     K+ +   + GT
Sbjct: 1   DSYAVSGGLHGVGVSVVNALSTRLEVEIDTDGYHWEQTYVRAVPGEL--KRGEPTTRTGT 58

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------- 258
            ITF  DP+IF     ++   + +  Q  A+L+  +      ++   +            
Sbjct: 59  SITFWADPEIFETTT-YNVETVRRRLQEMAFLNKGLTMILRDERNGDDGEAEEPDAEGYV 117

Query: 259 ---EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PE 314
              ++ +F++P GL+ ++    +++  I  ++     E+ G    ++E A+ W       
Sbjct: 118 AKVKEYKFHYPNGLEDFVAHLNKSKEPIHKKLIAYSAEEPGH---SLEVAMQWNSGYTES 174

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSV 372
           + ++ NTI T EGGTHE G R ALT  + +YA   +    +  ++  DD+      I+SV
Sbjct: 175 VYTFANTINTHEGGTHEEGFRAALTSTVNRYAREKKLLKDKDPALSGDDIREGLAAIVSV 234

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
            ++EP+F GQTKTKL + + +  V+    +    +L +NP EA  ++   I+ ++ R+  
Sbjct: 235 KLKEPQFEGQTKTKLGNTEVKSFVQRVSNEWLADWLERNPTEAKIIVNKAIQSAQARIAA 294

Query: 433 RKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           RK RE V RK       LPGKLADC        EL+IVEGDSAGGSAK  R+   QA+LP
Sbjct: 295 RKARELVRRKAPGDIGGLPGKLADCRSTDPSKCELYIVEGDSAGGSAKSGRDSMFQAILP 354

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +RGKI+NV  A  +++  N ++  ++ ALG     ++    L+Y KV++
Sbjct: 355 IRGKIINVEKARIDRVLRNAEVQSIITALGTGIHDEFDITKLKYHKVVL 403


>gi|229891675|sp|P0C9C1|TOP2_ASFWA RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
          Length = 1192

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 109/650 (16%), Positives = 210/650 (32%), Gaps = 88/650 (13%)

Query: 72  KALHHLFSEVIDNAMDEVIAGYANL-----IEVSLDGNGFLTVVDNGRGIPVENHPKFP- 125
            AL  +F E+I NA D   A ++       I++S +  G  +  ++G GIP+  H +   
Sbjct: 52  PALLKIFDEIIVNATDHERACHSKTKKVTYIKISFNK-GVFSCENDGPGIPIAKHEQASL 110

Query: 126 ----NKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFS 181
               +    E+      AG   + +   I GG +GVG+ +    S    +T A     + 
Sbjct: 111 IAKRDVYVPEVASCHFLAGTNINKAKDCIKGGTNGVGLKLAMVHSQWAILTTADGAQKYV 170

Query: 182 QKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD-------KAGFDAARLLKMTQSK 234
           Q  ++ + +         R    TRI   P  +  G        +    +A +       
Sbjct: 171 QHINQRLDIIEPPTITPSREM-FTRIELMPVYQELGYAEPLSETEQADLSAWIYLRACQC 229

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           A   G+  T +  +K       +   + +             L +    +    T K + 
Sbjct: 230 AAYVGKGTTIYYNEKPCRTGSVMALAKMY------------TLLSAPNGTIHTATIKADA 277

Query: 295 KGTHRGTVEWAIAWCEENPEITSYCNTI-LTDEGGTHESGLRVALTRGIKKYAELTQNKR 353
           K      ++ A     +  +         +    G H + L+  +   + K  + T   +
Sbjct: 278 KPYSLHPLQVAAVVSPKFKKFEHVSIINGVNCVKGEHVTFLKKTINEIVVKKFQQTIKDK 337

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
                  D   +   ++   I   E+ GQ K +L   +    V          +L     
Sbjct: 338 NRKTTLRDSCSNIFIVIVGSIPGIEWTGQRKDELSIAEN---VFKTHYSIPSSFLTSMTK 394

Query: 414 EATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
               +L   I +                     +    +  +     A    L   EGDS
Sbjct: 395 SIVDILLQSISK-------------KDNHKQVDVDKYTRARNAGGKRAQDCMLLAAEGDS 441

Query: 474 A----------GGSAKQARNRSNQAVLPLRGKILNVAS--------------AGSEKIRN 509
           A          G S     +     ++ L G I+N                   +E++ N
Sbjct: 442 ALSLLRTGLTLGKSNPSGPSFDFCGMISLGGVIMNACKKVTNITTDSGETIMVRNEQLTN 501

Query: 510 NQQIMDLVQALGCRTRSQYREE----DLRYEKVIIMTDADVDGAH-IASLLLTFFYQEMY 564
           N+ +  +VQ LG      Y+ +     LRY  ++   D D+DG   I  LLL +F+    
Sbjct: 502 NKVLQGIVQVLGLDFNCHYKTQEERAKLRYGCIVACVDQDLDGCGKILGLLLAYFHLFWP 561

Query: 565 DLIEQKHLFLISPPLFRITQGTKS--VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
            LI    +  +  PL R+ +  K+  V  + E+      ++          +  +KGL  
Sbjct: 562 QLIIHGFVKRLLTPLIRVYEKGKTVPVEFYYEQEFDAWAKKQTSLANH--TVKYYKGLAA 619

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
               ++K      +        ++         ++  +   G +++ R +
Sbjct: 620 HDTHEVKSMFKHFDNMVYT-FTLDD------SAKELFHIYFGGESELRKR 662


>gi|90903298|gb|ABE02214.1| gyrase B [Campylobacter jejuni]
          Length = 387

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 147/401 (36%), Positives = 213/401 (53%), Gaps = 18/401 (4%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           F   TY++SGGLHGVG+SVVNALS +L  TV R   I+ Q+FS G  +S      K +  
Sbjct: 1   FGKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSKK- 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT I F PD +IF     FD   L K  +  AYL+ ++   +  ++       + + E 
Sbjct: 60  TGTTIEFWPDDQIFEVT-EFDYEILAKRFRELAYLNPKITINFKDNR-------VGKHES 111

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNT 321
           F+F GG+  ++    +  +L  +  F+   E        VE A+ + +   E   S+ N 
Sbjct: 112 FHFEGGISQFVTDLNKKEALTKAIFFSVDEED-----VNVEVALLYNDTYSENLLSFVNN 166

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I T +GGTHE+G R+ LTR I           ++   I  +D+    + ++SV + EP+F
Sbjct: 167 IKTPDGGTHEAGFRMGLTRVISNLHRSNASAREKDNKITGEDVREGLIAVVSVKVPEPQF 226

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-V 438
            GQTK KL S   +  V  A  +    Y  +NPIEA  ++   +  +  R   +K RE  
Sbjct: 227 EGQTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELT 286

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            +K ++    LPGKLADC       +E+++VEGDSAGGSAKQ R RS QA+LPLRGKILN
Sbjct: 287 RKKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILN 346

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
           V  A  +KI  ++QI +++ A GC     +    LRY K+I
Sbjct: 347 VEKARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKII 387


>gi|126035284|gb|ABN72395.1| gyrase B subunit [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 382

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 142/393 (36%), Positives = 217/393 (55%), Gaps = 16/393 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           +GGLHGVG+SVVNALS +L + + R   I  Q +  G+P +PL       +K GT + F 
Sbjct: 1   TGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ GG+K
Sbjct: 60  PSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIK 112

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   +GGT
Sbjct: 113 AFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGT 169

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KL
Sbjct: 170 HLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKL 229

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRK 446
           VS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+  
Sbjct: 230 VSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDL 289

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 290 AGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 349

Query: 507 IRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
           + ++Q++  L+ ALGC   R +Y  + LRY  +
Sbjct: 350 MLSSQEVATLITALGCGIGRDEYNPDKLRYHSI 382


>gi|83853991|gb|ABC47933.1| gyrase B subunit [Vibrio cholerae O1 biovar El Tor]
          Length = 390

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 147/400 (36%), Positives = 225/400 (56%), Gaps = 15/400 (3%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS+++ +T+ R   I SQ +  G+P +PL    +   + GT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGET-ERTGTTV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F    L K  +  ++L+  V    + ++E  +K      + F + G
Sbjct: 60  RFWPSAQTFTNI-EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G++ ++     N++ I  ++F    E++     +VE A+ W +     I  + N I   +
Sbjct: 113 GIQAFVTHLNRNKTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRD 170

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R ALTR +  Y +      K   +   DD       ++SV + +P+F+ QTK
Sbjct: 171 GGTHLAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTK 230

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTA 443
            KLVS + +  VE+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK A
Sbjct: 231 DKLVSSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGA 290

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A 
Sbjct: 291 LDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 350

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
            +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 351 FDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 390


>gi|6729243|dbj|BAA89743.1| DNA gyrase subunit B [Mycobacterium avium]
 gi|308152543|dbj|BAJ22250.1| DNA gyrase subunit B [Mycobacterium avium subsp. paratuberculosis]
 gi|308153178|dbj|BAJ22178.1| DNA gyrase subunit B [Mycobacterium avium]
 gi|308153180|dbj|BAJ22179.1| DNA gyrase subunit B [Mycobacterium avium]
 gi|308153182|dbj|BAJ22180.1| DNA gyrase subunit B [Mycobacterium avium]
          Length = 421

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 138/427 (32%), Positives = 214/427 (50%), Gaps = 35/427 (8%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
            +NS Y +SGGLHGVG+SVVNALS  L V +AR    +SQ +   +P +   K+ +   +
Sbjct: 1   GENSGYNVSGGLHGVGVSVVNALSTRLEVNIARDGYEWSQYYDHAVPGTL--KQGEATKR 58

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-------- 254
            GT I F  DP IF     +D   + +  Q  A+L+  +    + ++   E+        
Sbjct: 59  TGTTIRFWADPDIFETT-EYDFETVARRLQEMAFLNKGLTINLTDERVTNEEVVDEVVSD 117

Query: 255 -----------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                                +   F++PGGL  +++     ++ I   I     +  G 
Sbjct: 118 TADAPKSAQEKAAESAAPHKVKHRTFHYPGGLVDFVKHINRTKNPIHQSIIDFGGKGPGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRA 354
               VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +     + 
Sbjct: 178 ---EVEIAMQWNGGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
            ++  DD+      ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP +
Sbjct: 235 PNLTGDDIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPAD 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDS
Sbjct: 295 AKVIVNKAVSSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    L
Sbjct: 355 AGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDITKL 414

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 415 RYHKIVL 421


>gi|269799068|gb|ACZ43812.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 342

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 110/326 (33%), Positives = 181/326 (55%), Gaps = 15/326 (4%)

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G ++V D+GRGIPV+ H +    S  E+ILT LHAGGKFD+++Y++SGGLHGVG+SVV
Sbjct: 1   DDGSVSVSDDGRGIPVDIHEE-EGVSAAEVILTVLHAGGKFDDNSYKVSGGLHGVGVSVV 59

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS++L +T+ R   I +Q +  G+P  P+ +   V +  GT + F P  + F +   F
Sbjct: 60  NALSEKLELTIFRHGKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFWPSHETFTNTL-F 117

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  ++L+  V      ++E        + + F + GG+K ++     N++ 
Sbjct: 118 HYDILAKRLRELSFLNSGVSIKLIDERED------GKSDHFVYEGGIKAFVDYLNVNKTP 171

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           I+ + F    E++     TVE A+ W +     I  + N I   +GGTH +G R ALTR 
Sbjct: 172 INKDAFHFSAERED--GITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGALTRT 229

Query: 342 IKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
           +  Y E     +  ++ +   DD       ++SV + +P+F+ QTK KLVS + +  VE 
Sbjct: 230 LNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQ 289

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIE 424
           A+ +    YL++NP EA+ ++  +I+
Sbjct: 290 AMGEKLAEYLLENPKEASTVVTKIID 315


>gi|22762027|dbj|BAC11800.1| gyrase B [Campylobacter coli]
          Length = 386

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 149/400 (37%), Positives = 213/400 (53%), Gaps = 18/400 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
             TY++SGGLHGVG+SVVNALS +L  TV R   I+ Q+FS G  +S  +   K +   G
Sbjct: 1   KDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFDIIGKSKK-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I F PD  IF     F+   L K  +  AYL+ ++   +  ++       + + E F+
Sbjct: 60  TTIEFWPDDTIFEVT-EFNYDILAKRFRELAYLNPKITINFKDNR-------VDKSESFH 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTIL 323
           F GG+  ++    +  +L     F+   E        VE A+ + +   E   S+ N I 
Sbjct: 112 FEGGISQFVSDLNKKEALTKPIFFSVDEED-----VNVEVALLYNDTYSENLLSFVNNIK 166

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T +GGTHE+G R+ LTR I  Y E      ++   I  DD+    + ++SV + EP+F G
Sbjct: 167 TPDGGTHEAGFRMGLTRVISNYIEANASAREKDSKITGDDVREGLIAVVSVKVPEPQFEG 226

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTK KL S   +  V  A  +    Y  +NPIEA  ++   +     R   +K RE   +
Sbjct: 227 QTKGKLGSSYVRPIVSKASFEYLSKYFEENPIEAKAIMNIALMAGRGREAAKKARELTRK 286

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K ++    LPGKLADC       +E+++VEGDSAGGSAKQ R RS QA+LPLRGKILNV 
Sbjct: 287 KESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVE 346

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +KI  ++QI +++ A GC     +    LRY K+II
Sbjct: 347 KARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIII 386


>gi|19912091|dbj|BAB88357.1| DNA gyrase subunit B [Cytophaga sp. T-424]
          Length = 391

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 143/396 (36%), Positives = 211/396 (53%), Gaps = 9/396 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+S VNALSD L  TV R   I+ Q++ RG  L P+++  +  + RGT +TF
Sbjct: 1   VSGGLHGVGVSCVNALSDHLTATVFRDGVIWQQEYERGKALYPVKRIGETED-RGTEVTF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD  IF     +    L    +  ++L+  V    +  ++  EK      E FY   GL
Sbjct: 60  HPDNTIFTQTTEYSYETLANRMRELSFLNKGVTITITDKRQKDEKGD-YVGETFYSNEGL 118

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGG 328
           + +++    NR  +   +   + EK       VE A+ +     E    Y N I T EGG
Sbjct: 119 REFVKFLDGNREPLIQGVIAMEGEKNNIP---VEVAMMYNTSYTENLHSYVNNINTHEGG 175

Query: 329 THESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH SG R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F GQTKTK
Sbjct: 176 THLSGFRRGLTSTLKKYADASGMLDKLKFEIQGDDFREGLTAIVSVKVSEPQFEGQTKTK 235

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IR 445
           L + +    V  A+ +    YL ++P +A  +++ VI  ++ R    K RE+ ++   + 
Sbjct: 236 LGNREVSAAVSQAVSEMLTDYLEEHPDDAKTIVQKVILAAQARHAASKAREMVQRKNVMS 295

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKL+DCS+      E+F+VEGDSAGG+AK  R+R+ QA+LPLRGKILNV  A   
Sbjct: 296 GGGLPGKLSDCSEQDPEKCEIFLVEGDSAGGTAKMGRDRNFQAILPLRGKILNVEKAMQH 355

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541
           K+  N++I ++  ALG    ++   + L  EK+  +
Sbjct: 356 KVFENEEIKNMYTALGVTIGTEEDSKALNLEKLRYL 391


>gi|223674722|gb|ACN13057.1| DNA gyrase subunit B [bacterium 2195.1]
 gi|223674724|gb|ACN13058.1| DNA gyrase subunit B [bacterium 2216]
          Length = 384

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 140/394 (35%), Positives = 218/394 (55%), Gaps = 16/394 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS++L + + R+  + +Q +  G P  PL+      +  GT 
Sbjct: 2   SYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHTQTYVHGEPQDPLKVIGDT-DVTGTT 60

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F P    F +   F+   L K  +  ++L+  V       ++        + + F++ 
Sbjct: 61  VRFWPSFNTFTNHTEFEYDILAKRLRELSFLNSGVAIRLLDKRD-------GKNDHFHYE 113

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+K +++   +N++ I   +F   T K       VE A+ W +     I  + N I   
Sbjct: 114 GGIKAFVEYLNKNKTPIHPTVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQR 170

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R A+TR +  Y +      K  IS   DD     + ++SV + +P+F+ QT
Sbjct: 171 DGGTHLAGFRSAMTRTLNAYMDKEGYSKKSKISATGDDAREGLIAVVSVKVPDPKFSSQT 230

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKT 442
           K KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    RK 
Sbjct: 231 KDKLVSSEVKTAVETLMNEKLVDYLMENPSDAKIVVGKIIDAARAREAARKAREMTRRKG 290

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 291 ALDLAGLPGKLADCQERDPAHSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 350

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRY 535
             +K+ ++Q++  L+ ALGC   R +Y  + LRY
Sbjct: 351 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRY 384


>gi|9971293|dbj|BAB12464.1| DNA gyrase B subunit [Oceanospirillum multiglobuliferum]
          Length = 391

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 143/403 (35%), Positives = 220/403 (54%), Gaps = 17/403 (4%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD++TY++SGGLHGVG+SVVNALS+EL +T+ R   +  Q +  G+P  PL+   +    
Sbjct: 1   FDDNTYKVSGGLHGVGVSVVNALSEELTLTIWRNGKVHEQVYRHGVPQEPLKIIGETTK- 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT   FRP P+ F +   F    L K  +  ++L+  V      ++           + 
Sbjct: 60  TGTEARFRPSPETFTNI-EFHYDILAKRLRELSFLNSGVSITLLDERS-------GRTDN 111

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           F + GGL+ +++   +N++ +++        + G     VE A+ W +     I  + N 
Sbjct: 112 FKYEGGLRAFVEYLNQNKTALNTVFHFNAQREDGV---GVEVALQWNDTYQENIFCFTNN 168

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R ALTR +  Y E      K  +S   DD       I+SV + +P+F
Sbjct: 169 IPQRDGGTHLAGFRAALTRTLNSYIEQEAKNKKEKVSTTGDDAREGLTAIVSVKVPDPKF 228

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EV 438
           + QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R   
Sbjct: 229 SSQTKDKLVSSEVKSAVEQEMGRLFADHLLENPNEAKAIVNKMIDAARAREAARKAREMT 288

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILN
Sbjct: 289 RRKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKTQAILPLKGKILN 348

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
           V  A  +K+ ++ ++  L+ A+GC   R ++  + LRY  +I 
Sbjct: 349 VEKARFDKMLSSAEVGTLITAMGCGIGREEFNPDKLRYHSIIF 391


>gi|19912113|dbj|BAB88368.1| DNA gyrase subunit B [Cytophaga sp. MBIC01481]
          Length = 391

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 147/395 (37%), Positives = 219/395 (55%), Gaps = 9/395 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+S VNALS  LH  V ++  ++ Q++ +G PL P++   +  +  GT +TF
Sbjct: 1   VSGGLHGVGVSCVNALSVHLHAKVYKKGQVWEQEYEKGKPLYPVKSTGETDD-NGTVVTF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +PDP+IF +   F    L K  +  A+L+  +K      +   EK      + F+   GL
Sbjct: 60  KPDPEIFKEVTVFSYDTLAKRLRELAFLNKGIKISLIDKRNKDEKG-EFISDNFHSEEGL 118

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGG 328
           K +++   E R  I  ++ + + EK       VE A+ + +   E    Y N I T EGG
Sbjct: 119 KEFIRFLDETRVPIIGDVISMEGEKNEIP---VEVAMIYNDSYNENLHSYVNNINTHEGG 175

Query: 329 THESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH SG R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F GQTKTK
Sbjct: 176 THLSGFRRGLTTTLKKYADASGMLDKLKFEISGDDFREGLTAIVSVKVAEPQFEGQTKTK 235

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIR 445
           L + +    V  A+ +  + YL +NP +A  +++ VI  ++ R   +K RE+  RKT + 
Sbjct: 236 LGNREVTSAVSQAVSEMLEAYLEENPNDAKTIVQKVILAAQARHAAKKAREMVQRKTVMS 295

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV  A   
Sbjct: 296 GGGLPGKLSDCSEQDPEQCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQH 355

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           K+  N++I ++  ALG    ++   + L   K+  
Sbjct: 356 KVFENEEIRNIYTALGVTIGTEEDSKALNLSKLRY 390


>gi|85541245|gb|ABC70863.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 385

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 142/396 (35%), Positives = 217/396 (54%), Gaps = 16/396 (4%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P +PL       +K GT + 
Sbjct: 1   KVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVR 59

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ GG
Sbjct: 60  FWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGG 112

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           +K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   +G
Sbjct: 113 IKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDG 169

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK 
Sbjct: 170 GTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKD 229

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAI 444
           KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+
Sbjct: 230 KLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGAL 289

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC +     +EL++VEGDSAGG AKQ RNR N A+LPL+GKILNV  A  
Sbjct: 290 DLAGLPGKLADCQERDPALSELYLVEGDSAGGFAKQGRNRKNPAILPLKGKILNVEKARF 349

Query: 505 EKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
           +K+ + Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 350 DKMLSFQEVATLITALGCGIGRDEYNPDKLRYHSII 385


>gi|164608590|gb|ABY62586.1| DNA gyrase beta subunit [Aliivibrio logei]
 gi|164608592|gb|ABY62587.1| DNA gyrase beta subunit [Aliivibrio logei]
 gi|164608594|gb|ABY62588.1| DNA gyrase beta subunit [Aliivibrio logei]
          Length = 397

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 154/406 (37%), Positives = 227/406 (55%), Gaps = 14/406 (3%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R+  IF Q +  G+P +PL       +
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRRGEIFQQIYCHGVPQAPLAVIG-TTD 59

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             GT+I F P  + F +   F    L K  +  ++L+  V       +E        + +
Sbjct: 60  TTGTKIRFWPSDQTFANI-EFVYDILAKRLRELSFLNSGVSIRLQDMRE------EDKSD 112

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F F GG+K ++     N++ +  +IF    E+K      VE A+ W +     I  Y N
Sbjct: 113 HFMFEGGIKAFVTHLNRNKTPVHQKIFYFDAERK-EDGIVVEVAMQWNDSYQENIFCYTN 171

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I   +GG H SG R ALTR +  + +      K   S   DD       ++SV + +P+
Sbjct: 172 NIPQRDGGAHLSGFRSALTRTLNSFMDKEGFSKKAKSSASGDDAREGLTAVVSVKVPDPK 231

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-E 437
           F+ QTK KLVS + +  VE+A+ +    +L +NP EA  +   +I+ +  R   RK R  
Sbjct: 232 FSSQTKDKLVSSEVKSAVESAMNEKLAEFLAENPGEAKMVCSKIIDAARAREAARKAREM 291

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
             RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKIL
Sbjct: 292 TRRKGALDIAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKIL 351

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
           NV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 352 NVEKARFDKMISSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMT 397


>gi|83854013|gb|ABC47944.1| gyrase B subunit [Aeromonas hydrophila]
          Length = 389

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 152/401 (37%), Positives = 228/401 (56%), Gaps = 17/401 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P P IF D   F    L K  +  ++L+  V      +++  E         F + GG+K
Sbjct: 60  PSPTIFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIK 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGT
Sbjct: 112 AFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KL
Sbjct: 169 HLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT-AIRK 446
           VS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE+  +  A+  
Sbjct: 229 VSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTHRKGALDI 288

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 289 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 348

Query: 507 IRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADV 546
           + ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADV
Sbjct: 349 MISSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMTDADV 389


>gi|164608584|gb|ABY62583.1| DNA gyrase beta subunit [Aliivibrio logei]
          Length = 397

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 153/406 (37%), Positives = 228/406 (56%), Gaps = 14/406 (3%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R+  +F Q +  G+P +PL       +
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRRGEVFQQIYCHGVPQAPLAVIG-TTD 59

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             GT+I F P  + F +   F    L K  +  ++L+  V       +E        + +
Sbjct: 60  TTGTKIRFWPSDQTFANI-EFVYDILAKRLRELSFLNSGVSIRLQDMRE------EDKSD 112

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F F GG+K ++     N++ +  +IF   +E+K      VE A+ W +     I  Y N
Sbjct: 113 HFMFEGGIKAFVTHLNRNKTPVHQKIFYFDSERK-EDGIVVEVAMQWNDSYQENIFCYTN 171

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I   +GG H SG R ALTR +  + +      K   S   DD       ++SV + +P+
Sbjct: 172 NIPQRDGGAHLSGFRSALTRTLNSFMDKEGFSKKAKSSASGDDAREGLTAVVSVKVPDPK 231

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-E 437
           F+ QTK KLVS + +  VE+A+ +    +L +NP EA  +   +I+ +  R   RK R  
Sbjct: 232 FSSQTKDKLVSSEVKSAVESAMNEKLAEFLAENPGEAKMVCSKIIDAARAREAARKAREM 291

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
             RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKIL
Sbjct: 292 TRRKGALDIAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKIL 351

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
           NV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 352 NVEKARFDKMISSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMT 397


>gi|33590356|gb|AAQ22718.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. akhurstii]
          Length = 384

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 139/392 (35%), Positives = 214/392 (54%), Gaps = 15/392 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNAL ++L + + R   +  Q +  G+P SPL+   +   + G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALPEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGET-EQTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           TR+ F P    F +   F    L K  +  ++L+  V       +   E       + F+
Sbjct: 60  TRVRFWPSMDTFRNNTEFQHDILAKRLRELSFLNSGVSIRLIDKRTNTE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I   +F   TEK G     VE ++ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEFLNKNKTPIHPNVFYFSTEKDGI---GVEISMQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH  G R A+TR +  Y +      K  +S   DD     V ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    R
Sbjct: 230 QTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVSKIIDAARAREAARKAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
            A  +K+ ++Q++  L+ ALGC         D
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPD 381


>gi|198042704|gb|ACH81177.1| GyrB [Pseudoalteromonas sp. UST981101-030]
          Length = 378

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 140/386 (36%), Positives = 220/386 (56%), Gaps = 14/386 (3%)

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
           +I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L +T+ R+  I  Q ++ G P +
Sbjct: 1   VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKLTIRREGKIHEQIYNMGEPAA 60

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
           PL    +     GT I F P  + F D   F    L K  +  ++L+  V    + +++ 
Sbjct: 61  PLAVVGE-SETNGTEIRFWPSSETFSDVN-FHYDILAKRLRELSFLNSGVSIILADERD- 117

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
                  +K+ F + GG++ +++    N++ ++  +F   + ++     +VE A+ W + 
Sbjct: 118 ------EKKDHFKYEGGIQAFVEFLNTNKTPVNQNVFHFTSTRE-EDGISVEVAMQWNDG 170

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVG 368
               I  + N I   +GGTH +G R ALTR +  Y E      K   S   DD       
Sbjct: 171 FQEGIYCFTNNIPQRDGGTHLAGFRSALTRTLNTYMEKEGFNKKEKSSASGDDAREGLTA 230

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSE 427
           ++ V + +P+F+ QTK KLVS + +  VE A+ +    YL++NP +A  ++  +I+    
Sbjct: 231 VICVKVPDPKFSSQTKDKLVSSEVKSAVEQAMGEKLSEYLLENPQDAKIVVTKIIDAARA 290

Query: 428 ERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
               R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQ
Sbjct: 291 REAARKAREMTRRKGAMDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQ 350

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQI 513
           A+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 351 AILPLKGKILNVEKARFDKMLSSQEV 376


>gi|309799460|ref|ZP_07693694.1| DNA gyrase subunit B [Streptococcus infantis SK1302]
 gi|308116921|gb|EFO54363.1| DNA gyrase subunit B [Streptococcus infantis SK1302]
          Length = 207

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 86/198 (43%), Positives = 125/198 (63%), Gaps = 2/198 (1%)

Query: 60  MRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119
           MRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I+V ++ +  +TVVD+GRGIPV+
Sbjct: 1   MRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVFIEPDDSITVVDDGRGIPVD 60

Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179
              K   +  +E + T LHAGGKF    Y++SGGLHGVG SVVNALS +L V V +   I
Sbjct: 61  IQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSTQLDVRVHKNGKI 119

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
             Q++ RG  ++ LE      +K GT + F PDP+IF +   FD  +L K  Q  A+L+ 
Sbjct: 120 HYQEYRRGHVVADLEVIGDT-DKTGTTVHFTPDPEIFTETTTFDFDKLNKRIQELAFLNR 178

Query: 240 RVKTCWSCDKEIAEKYGI 257
            ++   +  +E  E+   
Sbjct: 179 GLQISITDKREGLEQTKT 196


>gi|308152573|dbj|BAJ22265.1| DNA gyrase subunit B [Mycobacterium sp.]
          Length = 421

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 140/427 (32%), Positives = 216/427 (50%), Gaps = 35/427 (8%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
            +NS Y +SGGLHGVG+SVVNALS  L V + R    +SQ + R +P +   K+ +   K
Sbjct: 1   GENSGYNVSGGLHGVGVSVVNALSTRLEVDIKRDGYEWSQHYDRAVPGTL--KQGEATRK 58

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-------- 254
            GT I F  DP IF     +D   + +  Q  A+L+  +    + ++   E+        
Sbjct: 59  TGTTIRFWADPDIFETT-EYDFETVARRLQEMAFLNKGLTINLTDERVTQEEVVDEVVSD 117

Query: 255 -----------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                                +   F++PGGL  +++     +S I   +   + + +G 
Sbjct: 118 TAEAPKSAEEKKAESAGPQKVKHRTFHYPGGLIDFVKHISRTKSPIQQSVIAFEGKGEGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRA 354
               VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +     + 
Sbjct: 178 ---EVEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
            ++  DD+      ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP E
Sbjct: 235 PNLTGDDIREGLAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPSE 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDS
Sbjct: 295 AKTVVNKAVSSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    L
Sbjct: 355 AGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDLTKL 414

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 415 RYHKIVL 421


>gi|308153130|dbj|BAJ22154.1| DNA gyrase subunit B [Micromonospora violacea]
          Length = 393

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 125/399 (31%), Positives = 210/399 (52%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V + +   ++ Q+++   P    +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKSGFVWRQEYNNSKPGPLDK--GETTDRSG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PDP +F     FD   + +  Q  A+L+  ++     ++   E+ G   +  F+
Sbjct: 59  SAVSFWPDPDVFETV-DFDFQTIYRRLQEMAFLNRALRIHLLDERVAEEEDGRQREVTFF 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    +++ I   +     E++G    +VE A+ W E     + ++ NTI 
Sbjct: 118 YEGGIADFVRHLNASKNPIHKTVVEFDAEEEG---MSVEIAMQWNESYGESVYTFANTIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQ
Sbjct: 175 THEGGTHEEGFRSALTSVVNRYGTDKKLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    +    +  +NP EA  +++            ++ ++   RK
Sbjct: 235 TKTKLGNTPVKSFVQRVCNEWLVDWFDRNPAEAKMIIQKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY KV++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDMEKLRYHKVVL 393


>gi|188529738|gb|ACD62556.1| GyrB [Micromonospora sp. 63]
 gi|188529760|gb|ACD62566.1| GyrB [Micromonospora sp. 49]
          Length = 393

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 127/399 (31%), Positives = 209/399 (52%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V + +   ++ Q++    P S  +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKSGFVWRQQYHNSKPDSLDK--GETTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PDP +F     FD   + +  Q  A+L+  +      ++    + G P +  FY
Sbjct: 59  SAVSFWPDPDVFETT-DFDFQTIYRRLQEMAFLNRALSIHLLDERVAEGEEGKPREVTFY 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    +++ +   +     E++G    +VE A+ W E     + ++ NTI 
Sbjct: 118 YEGGIADFVRHLNASKNPMHKTVVEFAAEEEG---MSVEIAMQWNESYGESVYTFANTIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQ
Sbjct: 175 THEGGTHEEGFRAALTSVVNRYGADKKLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    D    +  +NP EA  +++            ++ ++   RK
Sbjct: 235 TKTKLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKTIIQKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY KV++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDMEKLRYHKVVL 393


>gi|188529755|gb|ACD62564.1| GyrB [Micromonospora sp. 25]
          Length = 393

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 123/399 (30%), Positives = 207/399 (51%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V + +   ++ Q++++  P    +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQRYNQSKPTPLEK--GEPTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PDP +F     FD   + +  Q  A+L+  +      ++   ++ G P +  F+
Sbjct: 59  SAVSFWPDPDVFETV-DFDFHTIYRRLQEMAFLTRGLTIHLLDERVPEDEEGKPREVTFH 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    ++S I   +     E+ G    + E A+ W E     + ++ N I 
Sbjct: 118 YDGGIADFVRHLNASKSPIHKTVVEFGAEETG---MSAEIAMQWNESYGESVYTFANNIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISI-ISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +       +D+      I+SV + +P+F GQ
Sbjct: 175 THEGGTHEEGFRAALTSVVNRYGAEKKLLKGDERLSGEDIREGLAAIISVKLTDPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    +    +  +NP EA  ++ +           ++ ++   RK
Sbjct: 235 TKTKLGNTPVKGFVQRVCNESLVDWFDRNPAEAKIIITKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +P KLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPSKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY KV++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDMEKLRYHKVVL 393


>gi|19912051|dbj|BAB88337.1| DNA gyrase subunit B [Cytophaga sp. MBIC04693]
          Length = 391

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 145/395 (36%), Positives = 212/395 (53%), Gaps = 9/395 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+S VNALS+ L  TV R   I+ Q++ RG  L P++   +  + RGT +TF
Sbjct: 1   VSGGLHGVGVSCVNALSNHLKATVHRDGKIWEQEYERGKALYPVKSVGET-DYRGTIVTF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +PD  IF     +    L    +  ++L+  V    +  +   +K      E F+   GL
Sbjct: 60  KPDDTIFTQTIEYSYETLSNRMRELSFLNKGVTITITDRRRKDDKG-EFISETFFSNDGL 118

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGG 328
           K +++    NR  +   + + + EK       VE A+ +     E    Y N I T EGG
Sbjct: 119 KEFVKFLDGNREPLIQNVISMEGEKNDIP---VEVAMIYNTSYTENLHSYVNNINTHEGG 175

Query: 329 THESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH SG R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F GQTKTK
Sbjct: 176 THLSGFRRGLTTTLKKYADSSGMLDKLKFEIQGDDFREGLTAIVSVKVAEPQFEGQTKTK 235

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIR 445
           L + +    V  A+ +    YL ++P +A  +++ VI  ++ R    K RE+  RKT + 
Sbjct: 236 LGNREVSSAVSQAVSEMLTDYLEEHPDDAKVIVQKVILAAQARHAATKAREMVQRKTVMS 295

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV  A   
Sbjct: 296 VGGLPGKLSDCSEQDPAQCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQH 355

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           K+  N++I ++  ALG    ++   + L  EK+  
Sbjct: 356 KVFENEEIKNIYTALGVTIGTEEDSKALNLEKLRY 390


>gi|188529740|gb|ACD62557.1| GyrB [Micromonospora sp. 72]
          Length = 393

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 127/399 (31%), Positives = 208/399 (52%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V + +   ++ Q++    P    +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKSGFVWRQQYHNSKPDPLEK--GETTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PDP +F     FD   + +  Q  A+L+  +      ++    + G P +  FY
Sbjct: 59  SAVSFWPDPDVFETT-DFDFQTIYRRLQEMAFLNRALSIHLLDERVAEGEEGKPREVTFY 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    +++ +   +     E++G    +VE A+ W E     + ++ NTI 
Sbjct: 118 YEGGIADFVRHLNASKNPMYKTVVEFAAEEEG---MSVEIAMQWNESYGESVYTFANTIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQ
Sbjct: 175 THEGGTHEEGFRAALTSVVNRYGADKKLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    D    +  +NP EA  +++            ++ ++   RK
Sbjct: 235 TKTKLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKTIIQKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N +I  L+ ALG      +  E LRY KV++
Sbjct: 355 ARIDRVLKNNEIQALITALGTGIHDDFDMEKLRYHKVVL 393


>gi|126035326|gb|ABN72416.1| gyrase B subunit [Shigella dysenteriae]
 gi|126035328|gb|ABN72417.1| gyrase B subunit [Shigella dysenteriae]
 gi|126035338|gb|ABN72422.1| gyrase B subunit [Shigella flexneri]
          Length = 385

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 144/396 (36%), Positives = 220/396 (55%), Gaps = 16/396 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + F
Sbjct: 1   VSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ GG+
Sbjct: 60  WPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGI 112

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   +GG
Sbjct: 113 KAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGG 169

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK K
Sbjct: 170 THLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDK 229

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIR 445
           LVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+ 
Sbjct: 230 LVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALD 289

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +
Sbjct: 290 LAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 349

Query: 506 KIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
           K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 KMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 385


>gi|126035312|gb|ABN72409.1| gyrase B subunit [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 382

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 143/392 (36%), Positives = 217/392 (55%), Gaps = 16/392 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P +PL       +K GT + F
Sbjct: 1   VSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ GG+
Sbjct: 60  WPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGI 112

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   +GG
Sbjct: 113 KAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGG 169

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK K
Sbjct: 170 THLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDK 229

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIR 445
           LVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+ 
Sbjct: 230 LVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALD 289

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +
Sbjct: 290 LAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 349

Query: 506 KIRNNQQIMDLVQALGCRT-RSQYREEDLRYE 536
           K+ ++Q++  L+ ALGC   R +Y  + LRY 
Sbjct: 350 KMLSSQEVATLITALGCGIGRDEYNPDKLRYH 381


>gi|313747305|dbj|BAJ41201.1| DNA gyrase subunit B [Bacillus sp. 3B133-2]
          Length = 390

 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 140/400 (35%), Positives = 214/400 (53%), Gaps = 14/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS    V V R   I S KF RG  + PL+   +  ++ G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSVSTEVYVKRDGHIHSIKFERGKTVQPLQIIGE-SDETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F+ DP+IF +   ++   L    +  AYL+  ++     ++E          + F+
Sbjct: 60  TTTRFKADPEIFKETTVYEYEILATRIRELAYLNRGIRITIQDEREE-----EVRSDSFH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTIL 323
           F GG++ Y++   +++  I   I   + EK G    +VE A+ +       I S+ N I 
Sbjct: 115 FEGGIREYVEHLNKSKEPIHDPIDV-RGEKDGI---SVEIAMQYNAGFSSTIYSFANNIN 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHESG + ALTR I  YA      +    ++  +D+      I+SV   +P+F G
Sbjct: 171 TYEGGTHESGFKTALTRVINDYARKNGMLKDSDANLTGEDVREGLTAIVSVKHPDPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNR 440
           QTKTKL + +      +   + F+ ++++NP  A K++E  ++        ++ +    R
Sbjct: 231 QTKTKLGNSEVSSITNSLFSEGFERFMLENPSVARKIIEKGLMAARARVAAKKAREFTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADC+      +E++IVEGDSAGGSAK  R+R  QA+LPLRGKILNV 
Sbjct: 291 KSALEVSSLPGKLADCTSTNPAESEIYIVEGDSAGGSAKSGRDRYFQAILPLRGKILNVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A   +I +N +I  ++ A G     ++  E  RY K++I
Sbjct: 351 KANLNRILSNAEIRAMITAFGTGIGEEFDLEKARYHKIVI 390


>gi|197092375|gb|ACE74724.2| DNA gyrase subunit B [Paenibacillus polymyxa]
          Length = 399

 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 152/410 (37%), Positives = 224/410 (54%), Gaps = 15/410 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKF    Y++SGGLHGVG+SVVNALS ++ V V R   ++ Q++ RG P   +    
Sbjct: 1   HAGGKFGGGGYKVSGGLHGVGVSVVNALSSKMIVHVKRDGHVYEQEYHRGAPQYDVRVIG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
                 GT+ TF PD +IF +   +D   L    +  A+L+  +    + ++        
Sbjct: 61  DTEE-TGTQTTFYPDEQIFTETTVYDYDTLQTRIRELAFLNKGIAISLTDER-------T 112

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
              + F++ GG+  Y+Q   + R  +  +    +  +       VE A+ + +     I 
Sbjct: 113 GASDTFHYEGGISEYVQFLNQKREALHEQPIYVEGSRDTIQ---VEVALQYNDSYTENIY 169

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFI 374
           S+ N I T EGGTHESG + ALTR I  YA      +    ++  DD+      I+SV I
Sbjct: 170 SFANNINTHEGGTHESGFKSALTRIINDYARKNGLIKDNNANLTGDDVREGLTAIISVKI 229

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP+F GQTKTKL + + +  VE+   +    +L +NP  + ++++  ++ +  R   RK
Sbjct: 230 PEPQFEGQTKTKLGNSEVRGIVESLFAEKLQEFLEENPSVSRRVVDKSLQAARAREAARK 289

Query: 435 QRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            RE   RK+A+    LPGKLADCS   A  +EL+IVEGDSAGGSAKQ R+R  QA+LP+R
Sbjct: 290 ARELTRRKSALEISSLPGKLADCSSKDASISELYIVEGDSAGGSAKQGRDRHFQAILPIR 349

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTD 543
           GKILNV  A  ++I ++ +I  +V A+G      +     RY KVIIMTD
Sbjct: 350 GKILNVEKARLDRILSSDEIRSMVTAMGTGIGDDFDISKARYHKVIIMTD 399


>gi|303398797|emb|CBW46778.1| P1192R [African swine fever virus Georgia 2007/1]
          Length = 1192

 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 111/650 (17%), Positives = 209/650 (32%), Gaps = 88/650 (13%)

Query: 72  KALHHLFSEVIDNAMDEVIAGYANL-----IEVSLDGNGFLTVVDNGRGIPVENHPKFP- 125
            AL  +F E+I NA D   A +        I++S D  G  +  ++G GIP+  H +   
Sbjct: 52  PALLKIFDEIIVNATDHERACHNKTKKVTYIKISFDK-GVFSCENDGPGIPIAKHEQASL 110

Query: 126 ----NKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFS 181
               +    E+      AG   + +   I GG +GVG+ +    S    +T A     + 
Sbjct: 111 IAKRDVYVPEVASCHFLAGTNINKAKDCIKGGTNGVGLKLAMVHSQWAILTTADGAQKYV 170

Query: 182 QKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD-------KAGFDAARLLKMTQSK 234
           Q  ++ + +         R    TRI   P  +  G        +    +A +       
Sbjct: 171 QHINQRLDIIEPPTITPSREM-FTRIELMPVYQELGYAEPLSETEQADLSAWIYLRACQC 229

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           A   G+  T +  DK       +   + +             L +    +    T K + 
Sbjct: 230 AAYVGKGTTIYYNDKPCRTGSVMALAKMY------------TLLSAPNSTIHTATIKADA 277

Query: 295 KGTHRGTVEWAIAWCEENPEITSYCNTI-LTDEGGTHESGLRVALTRGIKKYAELTQNKR 353
           K      ++ A     +  +         +    G H + L+  +   + K  + T   +
Sbjct: 278 KPYSLHPLQVAAVVSPKFKKFEHVSVINGVNCVKGEHVTFLKKTINEMVVKKFQQTIKDK 337

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
                  D   +   ++   I   E+ GQ K +L   +    V          +L     
Sbjct: 338 NRKTTLRDSCSNIFIVIVGSIPGIEWTGQRKDELSIAEN---VFKTHYSIPSSFLTSMTK 394

Query: 414 EATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
               +L   I +                     +    +  +     A    L   EGDS
Sbjct: 395 SIVDILLQSISK-------------KDNHKQVDVDKYTRARNAGGKRAQDCMLLAAEGDS 441

Query: 474 A----------GGSAKQARNRSNQAVLPLRGKILNVAS--------------AGSEKIRN 509
           A          G S     +     ++ L G I+N                   +E++ N
Sbjct: 442 ALSLLRTGLTLGKSNPSGPSFDFCGMISLGGVIMNACKKVTNITTDSGETIMVRNEQLTN 501

Query: 510 NQQIMDLVQALGCRTRSQYREE----DLRYEKVIIMTDADVDGAH-IASLLLTFFYQEMY 564
           N+ +  +VQ LG      Y+ +     LRY  ++   D D+DG   I  LLL +F+    
Sbjct: 502 NKVLQGIVQVLGLDFNCHYKTQEERAKLRYGCIVACVDQDLDGCGKILGLLLAYFHLFWP 561

Query: 565 DLIEQKHLFLISPPLFRITQGTKS--VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
            LI    +  +  PL R+ +  K+  V  + E+      ++          +  +KGL  
Sbjct: 562 QLIIHGFVKRLLTPLIRVYEKGKTMPVEFYYEQEFDAWAKKQTSLANH--TVKYYKGLAA 619

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
               ++K      +        ++         ++  +   G +++ R +
Sbjct: 620 HDTHEVKSMFKHFDNMVYT-FTLDD------SAKELFHIYFGGESELRKR 662


>gi|6729172|dbj|BAA89719.1| DNA gyrase subunit B [Actinoplanes regularis]
          Length = 396

 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 136/400 (34%), Positives = 212/400 (53%), Gaps = 8/400 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           N  Y++SGGLHGVG+SVVNALS  + V + +   ++ QK++  +P   ++   +     G
Sbjct: 1   NQAYKVSGGLHGVGVSVVNALSTRMAVKIHKNGFVWRQKYNASVPEELIK--GETTESTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           + + F PDP IF     FD   + +  Q  A+L+  +   ++ ++ E A++ G P K  F
Sbjct: 59  STVQFWPDPNIFETV-EFDFQTIYRRLQEMAFLNRALTINFTDERTEFADENGEPRKVTF 117

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG+  +++     +S I   +    TE        VE A+ W E     + ++ N I
Sbjct: 118 MYAGGISDFVRHLNATKSAIHKTVIEFGTE-DNEAGMGVEIAMQWNESYGESVYTFANRI 176

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAG 381
            T EGGTHE G R ALT  + KY    +  K    +  +D+      I+SV +REP+F G
Sbjct: 177 NTHEGGTHEEGFRAALTTIVNKYGIEKKFLKSDQKLSGEDIREGLAAIISVTLREPQFEG 236

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNR 440
           QTKTKL + D +  V+    +    +  +NP +A  ++ +           ++ ++   R
Sbjct: 237 QTKTKLGNTDMKSFVQRVANEQLADWFDRNPADAKLIITKADQAARARIAAQQARKLARR 296

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+ +    +PGKLADC       TELFIVEGDSAGGSAKQ R+   QA+LP+RGKILNV 
Sbjct: 297 KSLLESGSMPGKLADCQSTDPRETELFIVEGDSAGGSAKQGRSSKYQAILPIRGKILNVE 356

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +++  N ++  L+ ALG     ++    LRY K+I+
Sbjct: 357 KARIDRVLKNNEVQALITALGTGIHDEFDIGKLRYHKIIL 396


>gi|188529734|gb|ACD62554.1| GyrB [Micromonospora sp. 56]
          Length = 393

 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 126/399 (31%), Positives = 208/399 (52%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V + +   ++ Q++    P    +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKSGFVWRQQYHNSKPDPLEK--GETTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PDP +F     FD   + +  Q  A+L+  +      ++    + G P +  FY
Sbjct: 59  SAVSFWPDPDVFETT-DFDFQTIYRRLQEMAFLNRALSIHLLDERVAEGEEGKPREVTFY 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    +++ +   +     E++G    +VE A+ W E     + ++ NTI 
Sbjct: 118 YEGGIADFVRHLNASKNPMHKTVVEFAAEEEG---MSVEIAMQWNESYGESVYTFANTIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQ
Sbjct: 175 THEGGTHEEGFRAALTSVVNRYGADKKLLKGDEKLSGEDIREGLAAIISVELANPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    D    +  +NP EA  +++            ++ ++   RK
Sbjct: 235 TKTKLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKTIIQKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY KV++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDMEKLRYHKVVL 393


>gi|60459470|gb|AAX20071.1| DNA gyrase subunit B [Leptospira santarosai serovar Shermani]
          Length = 142

 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 79/142 (55%), Positives = 104/142 (73%), Gaps = 1/142 (0%)

Query: 51  ILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVV 110
           ILEGLE VR RPGMYIG  DE  LH +  EV+DN++DE +AG+   I  S   +  + V 
Sbjct: 1   ILEGLEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEIIFSFLPDNIMEVK 60

Query: 111 DNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELH 170
           DNGRGIPV+ HP     ST+E+++T LHAGGKF+N  Y++SGGLHGVG+SVVNALS+ L 
Sbjct: 61  DNGRGIPVDIHP-DKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYLE 119

Query: 171 VTVARQNTIFSQKFSRGIPLSP 192
           V V ++  I++QK+ +GIP+SP
Sbjct: 120 VEVHQKGKIYTQKYEKGIPVSP 141


>gi|56463177|gb|AAV91730.1| gyrase B [Escherichia coli]
          Length = 234

 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 84/246 (34%), Positives = 134/246 (54%), Gaps = 13/246 (5%)

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
           +AG+   I V++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y+
Sbjct: 1   LAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYK 59

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + F
Sbjct: 60  VSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRF 118

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ GG+
Sbjct: 119 WPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGI 171

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   +GG
Sbjct: 172 KAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGG 228

Query: 329 THESGL 334
           TH +G 
Sbjct: 229 THLAGF 234


>gi|126035282|gb|ABN72394.1| gyrase B subunit [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|126035298|gb|ABN72402.1| gyrase B subunit [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
          Length = 383

 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 144/394 (36%), Positives = 218/394 (55%), Gaps = 16/394 (4%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS +L + + R   I  Q +  G+P +PL       +K GT + F P
Sbjct: 1   GGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F+   L K  +  ++L+  V       ++  E       + F++ GG+K 
Sbjct: 60  SHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKA 112

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH
Sbjct: 113 FVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTH 169

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLV
Sbjct: 170 LAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLV 229

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447
           S + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+   
Sbjct: 230 SSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLA 289

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+
Sbjct: 290 GLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 349

Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 LSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 383


>gi|27544678|dbj|BAC55034.1| DNA gyrase B subunit [Tatlockia maceachernii]
          Length = 389

 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 144/401 (35%), Positives = 227/401 (56%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+ELH+T+ R   +  Q +  G+P SPL    +  +  G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELHLTIRRNGKVHEQHYRHGVPDSPLAVTGEA-DTTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T++ F+P P  F +   F    L K  +  ++L+  V+     ++         +++ F 
Sbjct: 60  TQVWFKPSPATFSNI-EFHYDILAKRLRELSFLNSGVRIHLYDER-------TQKQDTFC 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++    N++ I   +F+   EK      +VE ++ W +     I  + N I 
Sbjct: 112 YEGGIKAFVEHLNRNKTPIMPVVFSLSGEKDNI---SVELSLQWNDSFQETIFCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  Y E      K  I+   DD       +LSV + +P+F+ 
Sbjct: 169 QRDGGTHLAGFRAALTRTLNSYIENEGYAKKAKITTTGDDAREGLTAVLSVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE+ + +  + +L++NP  A  ++  +I+ +  R   RK R    R
Sbjct: 229 QTKDKLVSSEVKAAVESLVSEKLNDFLLENPSIAKSIVGKIIDAARAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ R+R  QA+LPL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC     +Y  +  RY ++II
Sbjct: 349 KARFDKMLSSQEVATLITALGCGIGPDEYDPDKTRYHRIII 389


>gi|19909749|dbj|BAB87070.1| DNA gyrase subunit B [Planktothrix rubescens]
 gi|19909751|dbj|BAB87071.1| DNA gyrase subunit B [Planktothrix rubescens]
 gi|19909753|dbj|BAB87072.1| DNA gyrase subunit B [Planktothrix rubescens]
 gi|19909755|dbj|BAB87073.1| DNA gyrase subunit B [Planktothrix rubescens]
 gi|19909757|dbj|BAB87074.1| DNA gyrase subunit B [Planktothrix rubescens]
 gi|19909759|dbj|BAB87075.1| DNA gyrase subunit B [Planktothrix rubescens]
 gi|19909765|dbj|BAB87078.1| DNA gyrase subunit B [Planktothrix agardhii]
 gi|19909767|dbj|BAB87079.1| DNA gyrase subunit B [Planktothrix agardhii]
 gi|19909769|dbj|BAB87080.1| DNA gyrase subunit B [Planktothrix agardhii]
 gi|19909771|dbj|BAB87081.1| DNA gyrase subunit B [Planktothrix agardhii]
 gi|19909773|dbj|BAB87082.1| DNA gyrase subunit B [Planktothrix agardhii]
 gi|19909775|dbj|BAB87083.1| DNA gyrase subunit B [Planktothrix agardhii]
 gi|19909777|dbj|BAB87084.1| DNA gyrase subunit B [Planktothrix agardhii]
 gi|19909779|dbj|BAB87085.1| DNA gyrase subunit B [Planktothrix agardhii]
 gi|19909781|dbj|BAB87086.1| DNA gyrase subunit B [Planktothrix agardhii]
 gi|19909783|dbj|BAB87087.1| DNA gyrase subunit B [Planktothrix agardhii]
 gi|19909785|dbj|BAB87088.1| DNA gyrase subunit B [Planktothrix rubescens]
 gi|295979513|dbj|BAJ07429.1| DNA gyrase subunit B [Planktothrix rubescens]
 gi|295979515|dbj|BAJ07430.1| DNA gyrase subunit B [Planktothrix agardhii]
 gi|295979527|dbj|BAJ07436.1| DNA gyrase subunit B [Planktothrix rubescens]
 gi|295979529|dbj|BAJ07437.1| DNA gyrase subunit B [Planktothrix rubescens]
 gi|295979531|dbj|BAJ07438.1| DNA gyrase subunit B [Planktothrix rubescens]
 gi|295979533|dbj|BAJ07439.1| DNA gyrase subunit B [Planktothrix rubescens]
 gi|295979535|dbj|BAJ07440.1| DNA gyrase subunit B [Planktothrix rubescens]
 gi|295979537|dbj|BAJ07441.1| DNA gyrase subunit B [Planktothrix rubescens]
 gi|295979539|dbj|BAJ07442.1| DNA gyrase subunit B [Planktothrix rubescens]
 gi|295979541|dbj|BAJ07443.1| DNA gyrase subunit B [Planktothrix rubescens]
 gi|295979543|dbj|BAJ07444.1| DNA gyrase subunit B [Planktothrix rubescens]
          Length = 352

 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 113/339 (33%), Positives = 173/339 (51%), Gaps = 4/339 (1%)

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AGY   IE+  + NG +TV D+GRGIPV+ H K   KS LE +LT LHAGGKF    Y++
Sbjct: 1   AGYCTHIEIDFNANGSVTVTDDGRGIPVDTHSK-TGKSALETVLTVLHAGGKFGGGGYKV 59

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS+ L VTV R    +SQ+F RG P + L  K     + GT + F 
Sbjct: 60  SGGLHGVGVSVVNALSEWLEVTVFRDRKEYSQRFERGTPATELTSKPIKEARTGTSVCFL 119

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PD  IF     FD   +    +  AYL+  VK   +  +    +   P  E + + GG++
Sbjct: 120 PDTVIFTTGIEFDCDTIASRLRELAYLNAGVKITLTDSRLELLRRETPRIETYRYEGGIR 179

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330
            Y+     ++  +  +I     E+    +  V         +  +  + N I T +GGTH
Sbjct: 180 EYIAYMNNDKQPLHEDIIYTCGERSNV-QIEVALQWCTDAYSDTVLGFANNIRTIDGGTH 238

Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             GL+  LTR +   A      +    ++  +++      ++S  + +PEF GQTKT+L 
Sbjct: 239 LEGLKTVLTRTLNAIARKRNKLKEGEANLGGENIREGLTAVISAKVPDPEFEGQTKTRLG 298

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
           + + +  V++ + +    YL  NP  A  ++E  I+  +
Sbjct: 299 NPEVRGIVDSLVGEALTEYLEFNPGIADAIIEKAIQAFK 337


>gi|324039418|dbj|BAJ78462.1| DNA gyrase subunit B [Alcanivorax sp. K2-1]
 gi|324039420|dbj|BAJ78463.1| DNA gyrase subunit B [Alcanivorax sp. K2-2]
          Length = 393

 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 151/405 (37%), Positives = 221/405 (54%), Gaps = 18/405 (4%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D++TY++SGGLHGVG+SVVNALS+EL +T+ R   +  Q +  G+P  PL+      +  
Sbjct: 1   DDNTYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYRHGVPDKPLDVVGNT-DSS 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT I FRP  + F +   F    L K  +  ++L+  V+     ++   E       E F
Sbjct: 60  GTSIHFRPSAETFSNI-KFHYDILAKRLRELSFLNSGVRIHLKDERSGEE-------EVF 111

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
            + GGL  ++    EN++ ++         E+ G     VE A+ W +     I  + N 
Sbjct: 112 EYEGGLSAFVSFLNENKTPLNQVFHFQYDREEDGI---AVEVAMQWNDSYQENIFCFTNN 168

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R ALTR +  Y +      K   +   DD       ++SV + +P+F
Sbjct: 169 IPQRDGGTHLAGFRGALTRTLNNYMDKEGLLKKEKANPSGDDAREGLTAVISVKVPDPKF 228

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REV 438
           + QTK KLVS + +  VE  + + F  YL++NP EA  + + +I+ +  R   RK     
Sbjct: 229 SSQTKDKLVSSEVKGAVEQTMGELFQDYLLENPGEAKAITQKIIDAARARDAARKAREMT 288

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC Q     +EL+IVEGDSAGGSAKQ R+R NQA+LPL+GKILN
Sbjct: 289 RRKGALDIAGLPGKLADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILN 348

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMT 542
           V  A  +K+ ++Q++  L+ ALGC         E LRY ++IIMT
Sbjct: 349 VEKARFDKMLSSQEVGTLITALGCGIGRDEYNVEKLRYHRIIIMT 393


>gi|110612645|gb|ABG78285.1| GyrB [uncultured bacterium]
          Length = 397

 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 147/408 (36%), Positives = 235/408 (57%), Gaps = 17/408 (4%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD+++Y++SGGLHGVG+SVVNALS+ELH+ + R   I  Q +  G+P +P+ +       
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSEELHLVIRRHGKIHEQHYRHGVPDAPIAETGDAT-T 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT+I F+P  + F +   F    L K  +  +YL+  V      ++          ++ 
Sbjct: 60  TGTQIWFKPSAETFSNI-EFHYDILAKRLRELSYLNSGVCIHLFDERSQ-------RQDT 111

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNT 321
           F++ GG++ +++   +N+++I+  +F+   EK       VE ++ W +   E    + N 
Sbjct: 112 FHYEGGIRAFVEHLNKNKTVINPAVFSMSAEKDNI---VVELSMQWNDSYQETLFCFTNN 168

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R ALTR +  Y E      K  +S   DD       +LSV + +P+F
Sbjct: 169 IPQRDGGTHMAGFRAALTRTLNNYIENEGHAKKAKVSPTGDDAREGLTAVLSVKVPDPKF 228

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EV 438
           + QTK KLVS + +  VE+++ +  + +L++NP  A  ++  +I+ +  R   R+ R   
Sbjct: 229 SSQTKDKLVSSEVKSVVESSVSEKLNDFLMKNPAAAKAIVAKIIDAARAREAARRARGMT 288

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILN
Sbjct: 289 RRKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILN 348

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           V  A  +K+ ++Q++  L+ ALGC     +Y  + +RY ++IIMTDAD
Sbjct: 349 VEKARFDKMLSSQEVATLITALGCGIGPDEYDPDKVRYHRIIIMTDAD 396


>gi|6729237|dbj|BAA89740.1| DNA gyrase subunit B [Mycobacterium szulgai]
          Length = 421

 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 138/427 (32%), Positives = 217/427 (50%), Gaps = 35/427 (8%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
            +NS Y +SGGLHGVG+SVVNALS  L V + R    +SQ +++ +P +   K+ +   K
Sbjct: 1   GENSGYNVSGGLHGVGVSVVNALSTRLEVDIKRDGHKWSQFYNKAVPGTL--KQGEATKK 58

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-------- 254
            GT I F  DP IF     +D   + +  Q  A+L+  +    + ++   ++        
Sbjct: 59  TGTTIRFWADPDIFETT-EYDFETVARRLQEMAFLNKGLTINLTDERVAQDEVVDEVVSD 117

Query: 255 -----------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                                +   F++PGGL  +++     +S I   +     + +G 
Sbjct: 118 TAEAPKSAEEKAAESKGPHKVKHRTFHYPGGLIDFVKHINRTKSPIQQSVVAFDGKGEGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRA 354
               VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +    ++ 
Sbjct: 178 ---EVEIAMQWNGGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKEKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
            ++  DD+      ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP E
Sbjct: 235 ANLTGDDIREGLAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPSE 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDS
Sbjct: 295 AKTVVNKAVSSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    L
Sbjct: 355 AGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDLAKL 414

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 415 RYHKIVL 421


>gi|107016082|gb|ABF83542.1| DNA gyrase subunit B [Vibrio mimicus]
          Length = 391

 Score =  217 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 144/401 (35%), Positives = 226/401 (56%), Gaps = 15/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G+P +PL    +   + G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLSVVGET-ERTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F    L K  +  ++L+  V    + ++E  +K      + F 
Sbjct: 60  TTVRFWPSAQTFTNI-EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFM 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG++ ++     N++ I  ++F    E++     +VE A+ W +     I  + N I 
Sbjct: 113 YEGGIQAFVTHLNRNKTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIP 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  Y +      K   +   DD       ++SV + +P+F+ 
Sbjct: 171 QRDGGTHLAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSS 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE+A+ +    +L +NP EA  +   +I+ +  R   RK R    R
Sbjct: 231 QTKDKLVSSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 291 KGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 351 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIII 391


>gi|19912041|dbj|BAB88332.1| DNA gyrase subunit B [Cytophaga sp. MBIC04663]
          Length = 391

 Score =  217 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 142/395 (35%), Positives = 209/395 (52%), Gaps = 9/395 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+S VNALS+ L  TV R   ++ Q++ RG  L P++   +  ++ GT +TF
Sbjct: 1   VSGGLHGVGVSCVNALSNHLKATVHRDGKVWEQEYERGKSLYPVKSVGET-DETGTIVTF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD  IF     +    L    +  ++L+  V    +  + + +K G    E FY   GL
Sbjct: 60  IPDDSIFTQTTEYSYETLANRMRELSFLNKGVTISITDKR-VKDKEGEYLSETFYSDAGL 118

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGG 328
             +++     R  +   +   + EK G     VE A+ +     E    Y N I T EGG
Sbjct: 119 SEFVKFLDGTREPLIQGVIAMEGEKNGIP---VEVAMVYNTSYTENLHSYVNNINTHEGG 175

Query: 329 THESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH SG R  LT  +KKYA+ +    K    +  DD       I+SV + EP+F GQTKTK
Sbjct: 176 THLSGFRRGLTSTLKKYADSSGMLEKLKFEVQGDDFREGLTAIVSVKVAEPQFEGQTKTK 235

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIR 445
           L + +    V  A+ +    YL ++P +A  +++ VI  ++ R    K RE+  RKT + 
Sbjct: 236 LGNREVSSAVSQAVCEMLTDYLEEHPDDAKVIVQKVILAAQARHAATKAREMVQRKTVMS 295

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKL+DCS+      E+F+VEGDSAGG+AK  R+R  QA+LPLRGKILNV  A   
Sbjct: 296 IGGLPGKLSDCSEQDPAQCEVFLVEGDSAGGTAKMGRDRKFQAILPLRGKILNVEKAMQH 355

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           K+  N++I ++  ALG    ++   + L  EK+  
Sbjct: 356 KVFENEEIKNIYTALGVTIGTEEDSKALNLEKLRY 390


>gi|28436086|dbj|BAC57433.1| gyrase B subunit [Pseudoalteromonas piscicida]
 gi|283489193|gb|ADB24862.1| gyrase B subunit [Pseudoalteromonas flavipulchra]
          Length = 390

 Score =  217 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 141/400 (35%), Positives = 225/400 (56%), Gaps = 15/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS++L +T+ R   +  QK++ G+P +PL    +     G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLQLTIRRDGKVHQQKYTMGVPDAPLGVIGEA-ESTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F D   F    L K  +  ++L+  V    + ++E        +++ F 
Sbjct: 60  TELRFWPSAETFSDTN-FHYDILAKRLRELSFLNSGVSIILNDERE------ENKQDHFK 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG++ ++      ++ +   +F   TE+      +VE ++ W +     I  + N I 
Sbjct: 113 YEGGIQAFVAYLNRKKTPVHQSVFHFSTERDD--GISVEVSMQWNDGFQENIYCFTNNIP 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  Y E      K   S   DD       ++SV + +P+F+ 
Sbjct: 171 QRDGGTHLAGFRAALTRTLNTYMEKEGFNKKYKTSATGDDAREGLTAVVSVKVPDPKFSS 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK KLVS + +  VE  + +    +L++NP +A  ++  +++ +  R   RK RE+ R+
Sbjct: 231 QTKDKLVSSEVKGAVEQMMAEKLTEFLLENPGDAKTVVNKIVDAARAREAARKAREMTRR 290

Query: 442 TA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
              +    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 291 KGVMDLAGLPGKLADCQERDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            A  +K+ ++Q++  L+ ALGC   R +Y  E LRY ++I
Sbjct: 351 KARFDKMLSSQEVATLITALGCGIGRDEYNPEKLRYHRII 390


>gi|188529749|gb|ACD62561.1| GyrB [Micromonospora chalcea]
          Length = 393

 Score =  217 bits (552), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 123/399 (30%), Positives = 206/399 (51%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V + +   ++ Q++    P    +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQRYDHSKPTPLEK--GEETDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PDP +F     FD   + +  Q  A+L+  +      ++   ++ G   +  F+
Sbjct: 59  SAVSFWPDPDVFETV-DFDFHTIYRRLQEMAFLTRGLTIHLLDERVPEDEDGKTREVTFH 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    ++S I   +     E+ G    +VE A+ W E     + ++ N I 
Sbjct: 118 YEGGIADFVRHLNASKSPIHKTVVEFGAEETG---MSVEIAMQWNESYGESVYTFANNIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISI-ISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +       +D+      I+SV + +P+F GQ
Sbjct: 175 THEGGTHEEGFRAALTSVVNRYGADKKLLKGDERLSGEDICEGLAAIISVKLTDPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    +    +  +NP EA  +++            ++ ++   RK
Sbjct: 235 TKTKLGNTPVKGFVQRVCNESLVDWFDRNPAEAKIIIQKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY K+++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDIEKLRYHKIVL 393


>gi|188529758|gb|ACD62565.1| GyrB [Micromonospora sp. 44]
          Length = 393

 Score =  217 bits (552), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 127/399 (31%), Positives = 209/399 (52%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V + +   ++ Q++    P S  +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKSGFVWRQQYHNSKPDSLDK--GETTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PDP +F     FD   + +  Q  A+L+  +      ++    + G P +  FY
Sbjct: 59  SAVSFWPDPDVFETT-DFDFQTIYRRLQEMAFLNRALSIHLLDERVAEGEEGKPREVTFY 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    +++ +   +     E++G    +VE A+ W E     + ++ NTI 
Sbjct: 118 YEGGIADFVRHLNASKNPMHKTVVEFAAEEEG---MSVEIAMQWNESYGESVYTFANTIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQ
Sbjct: 175 THEGGTHEEGFRAALTSVVNRYGADKKLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    D    +  +NP EA  +++            ++ ++   RK
Sbjct: 235 TKTKLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKTIIQKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY KV++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDMEKLRYNKVVL 393


>gi|6729245|dbj|BAA89744.1| DNA gyrase subunit B [Mycobacterium gordonae]
          Length = 421

 Score =  217 bits (552), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 139/427 (32%), Positives = 218/427 (51%), Gaps = 35/427 (8%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
            +NS Y +SGGLHGVG+SVVNALS  L V + R    +SQ + R +P +   K+ +   K
Sbjct: 1   GENSGYTVSGGLHGVGVSVVNALSTRLEVDIKRDGHEWSQYYKRAVPGTL--KQGETTRK 58

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-------- 254
            GT I F  DP+IF     +D   + +  Q  A+L+  +    + ++   ++        
Sbjct: 59  TGTTIRFWADPEIFETT-QYDFETVARRLQEMAFLNKGLTINLTDERVEQDEVVDEVVSD 117

Query: 255 -----------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                                ++  F++PGGL  +++     +S I   +   + +  G 
Sbjct: 118 TAEAPKSAEEKAAESKAPHKVKQRTFHYPGGLVDFVKHINRTKSPIQQSVIDFEGKGTGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRA 354
               VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +    ++ 
Sbjct: 178 ---EVEIAMQWNGGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKEKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
            ++  DD+      ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP E
Sbjct: 235 PNLTGDDIREGLAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPSE 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDS
Sbjct: 295 AKTVVNKAVSSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    L
Sbjct: 355 AGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDITKL 414

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 415 RYHKIVL 421


>gi|33469253|gb|AAQ19675.1| DNA gyrase subunit B [Xenorhabdus nematophila]
          Length = 380

 Score =  217 bits (552), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 140/389 (35%), Positives = 209/389 (53%), Gaps = 15/389 (3%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS++L +T+ R   +  Q +  G+P SPL        + GT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKLELTIRRDGKVHEQTYHHGVPQSPLNIVGDT-EQTGTTV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P    F     F+   L K  +  ++L+  V       +  AE         F++ G
Sbjct: 60  RFWPSMDTFKINTEFEYDILAKRLRELSFLNSGVSIRLVDKRTNAEDL-------FHYKG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K +++    N++ I   +F   TEK G     VE ++ W +     I  + N I   +
Sbjct: 113 GIKAFVEFLSRNKNPIHPNVFYFSTEKDGI---GVEISMQWNDGFQENIYCFTNNIPQRD 169

Query: 327 GGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH  G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK
Sbjct: 170 GGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDAREGLIAVISVKVPDPKFSSQTK 229

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTA 443
            KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A
Sbjct: 230 DKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVGKIIDAARAREAARKAREMTRRKGA 289

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A 
Sbjct: 290 LDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 349

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREED 532
            +K+ ++Q++  L+ ALGC         D
Sbjct: 350 FDKMLSSQEVATLITALGCGIGRDEYNPD 378


>gi|163256340|dbj|BAF95680.1| DNA gyrase subunit B [Bradyrhizobium sp. EPxn1]
          Length = 257

 Score =  217 bits (552), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 96/267 (35%), Positives = 146/267 (54%), Gaps = 11/267 (4%)

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AG+A  ++V L+ +  +TV D+GRGIPV+ H K    S  E+I+T LHAGGKFD 
Sbjct: 1   IDEAVAGHATRVDVVLNADNSVTVRDDGRGIPVDIH-KGEGISAAEVIMTQLHAGGKFDQ 59

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +L + + R +     +F+ G  ++PL+       +RGT
Sbjct: 60  NSYKVSGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHGDAVAPLKVVGDAPGRRGT 119

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            +TF   P+ F +   +D A L    +  A+L+  V    S  +   EK      EE ++
Sbjct: 120 EVTFLASPETFKN-IEYDFATLEHRLRELAFLNSGVNIILSDMRHAVEKR-----EEMHY 173

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILT 324
            GG++ +++    N+  I       + E  G     VE A+ W +   E    + N I  
Sbjct: 174 SGGVEEFVKYLDRNKKAIVPAPIMVRAEANGI---GVEAALWWNDSYHENVLCFTNNIPQ 230

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQN 351
            +GGTH +G R ALTR +  YAE    
Sbjct: 231 RDGGTHLAGFRGALTRQVNGYAEANAK 257


>gi|27544682|dbj|BAC55036.1| DNA gyrase B subunit [Fluoribacter dumoffii]
          Length = 389

 Score =  217 bits (552), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 144/401 (35%), Positives = 229/401 (57%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+ELH+TV R   I  Q +  G+P +P+ +        G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELHLTVRRHGKIHEQHYRNGVPEAPMVETGDAT-TTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+I F+P  + F +   F    L K  +  +YL+  V      ++          ++ F+
Sbjct: 60  TQIWFKPSAETFSNI-EFHYDILAKRLRELSYLNSGVCIHLFDERSQ-------RQDTFH 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+K +++   +N+++I   +F+   EK       VE ++ W +   E    + N I 
Sbjct: 112 YEGGIKAFVEHLNKNKNVIIPTVFSMSAEKDNI---VVELSMQWNDSYQETLYCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  Y E      K  +S   DD       +LSV + +P+F+ 
Sbjct: 169 QRDGGTHMAGFRAALTRTLNNYIENEGYAKKAKVSPTGDDAREGLTAVLSVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE+++ + F+ +L++NP  A  ++  +I+ +  R   R+ R    R
Sbjct: 229 QTKDKLVSSEVKSVVESSVAEKFNDFLLENPSSAKAIVAKIIDAARAREAARRAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV 
Sbjct: 289 KGALDVAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC     +Y  + +RY ++II
Sbjct: 349 KARFDKMLSSQEVATLITALGCGIGPDEYDPDKVRYHRIII 389


>gi|295388344|gb|ADG03067.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 149/404 (36%), Positives = 229/404 (56%), Gaps = 15/404 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       ++ 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DRT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+I F P  + F +   F    L K  +  ++L+  V      ++E        +++ F
Sbjct: 60  GTQIRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KQDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ ++Q    N++ I  +IF    E++     +VE A+ W +     I  + N I
Sbjct: 113 MYEGGIQAFVQHLNTNKTPIIEKIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
               GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+
Sbjct: 171 PQRGGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE+A+ +    +LV+NP EA  +   +I+ +  R   RK R    
Sbjct: 231 SQTKDKLVSSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|148611271|gb|ABQ95824.1| DNA gyrase subunit B [Acidiphilium sp. DX6]
          Length = 400

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 137/407 (33%), Positives = 215/407 (52%), Gaps = 15/407 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D ++Y++SGGLHGVG +VVNALS+ + V + R       +F  G  ++PL       +  
Sbjct: 1   DQNSYKVSGGLHGVGAAVVNALSEWMEVRIWRDGKEHLIRFENGDTVAPLAVVGASEHGT 60

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TFRP    F     FD A   +  +  A+L+  +      ++  A      ++  F
Sbjct: 61  GTSVTFRPSAATFTR-TEFDFAIYERRLRELAFLNSGLTINLRDERHSAV-----QEAHF 114

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GGL  ++      ++ + S   T   +        VE+A+AW +     +  + N I
Sbjct: 115 RYGGGLVEFVSWLDRAKTQLFSPPVTA-FKDDAPGGIKVEFALAWNDTYHETMLCFTNNI 173

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
           +  +GGTH +G R ALTR + KYAE    K ++S+  +D+      +LSV + +P+F+ Q
Sbjct: 174 VQRDGGTHLAGFRSALTRVVSKYAESLGKKDSLSLSGEDMREGLTAVLSVKVPDPKFSSQ 233

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK KLVS + Q  V+ A+ D  +H+   +P E   + + V++ +  R    K RE+  + 
Sbjct: 234 TKDKLVSSEVQPLVQAAVADALEHWFETHPKEGRLIAQKVMDAASAREAAHKARELTHRK 293

Query: 443 A-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC +     +E+FIVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  
Sbjct: 294 GVLDISTLPGKLADCQERDPAKSEIFIVEGDSAGGSAKQGRDRKTQAILPLKGKILNVER 353

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQ------YREEDLRYEKVIIMT 542
           A  +++  + +I  L+ ALG            +    LRY +++IMT
Sbjct: 354 ARFDRMLGSAEIGTLITALGTGIGPAEPEQGGFDISKLRYHRIVIMT 400


>gi|38224399|gb|AAR14135.1| DNA gyrase B subunit [Fusobacterium necrophorum subsp.
           funduliforme]
          Length = 404

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 143/413 (34%), Positives = 218/413 (52%), Gaps = 17/413 (4%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRN 201
           +N  Y++SGGLHGVGISVVNALS+   V V R+  ++ QK+ RG P+  ++     +   
Sbjct: 1   ENDNYKVSGGLHGVGISVVNALSEWTEVKVKREGNVYYQKYLRGKPIEDVKIISALEAGE 60

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             GT +TF+PD +IF     F+   L    +  AYL+  ++      +       I +KE
Sbjct: 61  TTGTIVTFKPDIEIFETVI-FEYEVLQHRLKELAYLNRGLEINLLDCR-----NEIGKKE 114

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCN 320
            F F GG+  +L+   +    + S+    + + +   +  V+ A  +   ++  I S+ N
Sbjct: 115 SFQFEGGISDFLKEVTQENQTLLSKQIHIEGQAE---QVGVDIAFTYTTGQSEIIYSFVN 171

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQN---KRAISIISDDLMISAVGILSVFIREP 377
            I T EGG+H +G R  LT+ I    + +     K+  +          + I+SV + +P
Sbjct: 172 NINTTEGGSHVTGFRTCLTKVIIDIGKKSGIFEGKKMENYKEATFGKELLLIISVKVPQP 231

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F GQTKTKL + +    V   L      +L  NP +   ++E ++   + R   ++ RE
Sbjct: 232 QFEGQTKTKLGNSEVSGIVNTVLSTDLKIFLEDNPNDTKLIIEKILNSKKAREAAQRARE 291

Query: 438 VNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              + + +    LPGKLADCS       E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKI
Sbjct: 292 AVLRKSVLEVGSLPGKLADCSSKKPEECEIFLVEGDSAGGSAKQGRDRYFQAILPLKGKI 351

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDG 548
           LNV  AG  K   + +I  +V A G     +  + E LRY K+I+MTDADVDG
Sbjct: 352 LNVEKAGLHKALESDEIRAMVTAFGTNIGEESFDLEKLRYGKIILMTDADVDG 404


>gi|308153146|dbj|BAJ22162.1| DNA gyrase subunit B [Saccharothrix mutabilis]
          Length = 403

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 137/408 (33%), Positives = 217/408 (53%), Gaps = 17/408 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  + V V R    ++Q+F    P   L K     ++ G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTAVDVEVKRDGFTWNQRFEASKPAHELRK-GAPTDETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------ 258
           T  TF  DP+IF     ++   + +  Q  A+L+  +      ++  AE           
Sbjct: 60  TTTTFWADPEIFETT-EYNLETISRRLQEMAFLNKGLTIVLRDERVRAEDEEADAEGHVA 118

Query: 259 --EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
              +  F++PGGL+ +++     R  +  ++   + +        VE A+ W     P +
Sbjct: 119 RVRERTFHYPGGLEDFVRHINHTREAVHQKVIAFEAKSD---ELEVEVAMQWNTGYTPSV 175

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
            ++ NTI T EGGTHE G R ALTR + +YA   +   ++  ++  DD+      I+SV 
Sbjct: 176 YTFANTINTHEGGTHEEGFRAALTRVVNEYARDKKLLKEKDSNLTGDDIREGLAAIISVK 235

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           ++EP+F GQTKTKL + +A+  V+ +  +    +  ++P EA  ++   +  ++ R+  R
Sbjct: 236 LKEPQFEGQTKTKLGNSEAKSFVQKSTNEHLADWFERHPNEAKTIVTKAVSSAQARIAAR 295

Query: 434 KQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           K RE V RK A+    LPGKL DC        E++IVEGDSAGGSAK+ R+   QA+LP+
Sbjct: 296 KARELVRRKGALDIGGLPGKLKDCRSTNPEECEIYIVEGDSAGGSAKEGRDSMFQAILPI 355

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           RGKI+NV  A  +++  N ++  L+ ALG      +    LRY K+++
Sbjct: 356 RGKIINVEKARIDRVLKNNEVQSLITALGTGIHEDFDLAKLRYHKIVL 403


>gi|126035250|gb|ABN72378.1| gyrase B subunit [Enterobacter cloacae]
 gi|126035252|gb|ABN72379.1| gyrase B subunit [Enterobacter cloacae]
          Length = 383

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 144/393 (36%), Positives = 219/393 (55%), Gaps = 16/393 (4%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL       +K GT + 
Sbjct: 1   KVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYQHGVPDAPLAVTGDT-DKTGTMVR 59

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ GG
Sbjct: 60  FWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE-------DHFHYEGG 112

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           +K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   +G
Sbjct: 113 IKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDG 169

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK 
Sbjct: 170 GTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKD 229

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAI 444
           KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+
Sbjct: 230 KLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGAL 289

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  
Sbjct: 290 DLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARF 349

Query: 505 EKIRNNQQIMDLVQALGCRT-RSQYREEDLRYE 536
           +K+ ++Q++  L+ ALGC   R +Y  + LRY 
Sbjct: 350 DKMLSSQEVATLITALGCGIGRDEYNPDKLRYH 382


>gi|295388315|gb|ADG03053.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 150/404 (37%), Positives = 229/404 (56%), Gaps = 15/404 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS+ + +T+ R   I +Q +  G P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSERVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+I F P  + F +   F    L K  +  ++L+  V      ++E        +++ F
Sbjct: 60  GTQIRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KQDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ ++Q    N++ I  +IF    E++     +VE A+ W +     I  + N I
Sbjct: 113 MYEGGIQAFVQHLNTNKTPIIEKIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+
Sbjct: 171 PQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE+A+ +    +LV+NP EA  +   +I+ +  R   RK R    
Sbjct: 231 SQTKDKLVSSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|211927075|dbj|BAG82790.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 418

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 133/424 (31%), Positives = 213/424 (50%), Gaps = 35/424 (8%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y++SGGLHGVG+SVVNALS  L   V +    + Q + R +P +  +      +K GT
Sbjct: 1   GAYQVSGGLHGVGVSVVNALSSRLEADVRKDGHEWFQTYDRSVPGTLRK--GDPTDKTGT 58

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK----------- 254
            I F  DP+IF     +D   + +  Q  A+L+  +    + ++   E+           
Sbjct: 59  TIRFWADPEIFETTN-YDFETIARRLQEMAFLNKGLTIELTDERVAPEEVVDDVVSDHAE 117

Query: 255 --------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                             +   F++PGGL  +++     ++ I   +     + +G    
Sbjct: 118 APKSAEEKAAEASAPQKVKHRVFHYPGGLVDFVKHINRTKTAIQPSVIDFDGKGEGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISI 357
            VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +    ++  ++
Sbjct: 175 EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDPNL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      ++SV + +P+F GQTKTKL + + +  V+    +  +H+   NP EA  
Sbjct: 235 TGDDIREGLAAVISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEQLNHWFESNPAEAKT 294

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGG
Sbjct: 295 VINKAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPTKSELYVVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY 
Sbjct: 355 SAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDISKLRYH 414

Query: 537 KVII 540
           K+++
Sbjct: 415 KIVL 418


>gi|45478723|gb|AAS66626.1| DNA gyrase subunit B [Campylobacter fetus]
          Length = 390

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 146/403 (36%), Positives = 219/403 (54%), Gaps = 17/403 (4%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D  TY++SGGLHGVG SVVNALS +L + + R   ++ Q+FS+GIP + LE   K  N+ 
Sbjct: 1   DKDTYKVSGGLHGVGASVVNALSKKLILNIKRDGNLYRQEFSKGIPQNILEAV-KTTNRT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F PD  IF     FD   L K  +  AYL+ R+   +   ++          E +
Sbjct: 60  GTSVEFWPDDDIFEVT-EFDKQILSKRFKELAYLNPRITINFKDQRD-------GFSETY 111

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTIL 323
           +F GGL++++    ++  +  +  F+G  E+       + +   + E    + S+ N I 
Sbjct: 112 HFEGGLESFVTDINKSNPVSKAVSFSG-GEEDVIVDFALLYNETYTEN---LLSFVNNIK 167

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T +GGTHE+G R  LTR I  Y        ++   I  DD+    + I+SV + EP+F G
Sbjct: 168 TPDGGTHEAGFRAGLTRAITNYIAANAAAREKDTKITGDDIREGLIAIVSVKVPEPQFEG 227

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE--VN 439
           QTK KL S   +  V+    D    Y  +NPIEA  ++   +  +  R   +K R+    
Sbjct: 228 QTKGKLGSSYVKPIVQKMTFDVLCKYFEENPIEAKAIMNKALMAARGREAAKKARDLTRK 287

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           + +      LPGKLADC       +E+++VEGDSAGGSAKQ R+R+ QA+LPLRGKILNV
Sbjct: 288 KDSLNSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRDRAFQAILPLRGKILNV 347

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
             +  +KI  +++I +++ A G     ++  E LRY K+IIMT
Sbjct: 348 EKSRLDKILKSEEIKNMITAFGFGIGEEFDPEKLRYHKIIIMT 390


>gi|188529783|gb|ACD62577.1| GyrB [Micromonospora sp. 90]
          Length = 393

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 126/399 (31%), Positives = 208/399 (52%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V + +   ++ QK+    P    +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKSGFVWRQKYHNSKPDPLDK--GETTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PDP +F     FD   + +  Q  A+L+  +      ++    + G P +  FY
Sbjct: 59  SAVSFWPDPDVFETT-DFDFQTIYRRLQEMAFLNRALSIHLLDERVAEGEEGKPREVTFY 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    +++ +   +     E++G    +VE A+ W E     + ++ NTI 
Sbjct: 118 YEGGIADFVRHLNASKNPMHKTVVEFAAEEEG---MSVEIAMQWNESYGESVYTFANTIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQ
Sbjct: 175 THEGGTHEEGFRAALTSVVNRYGADKKLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    D    +  +NP EA  +++            ++ ++   RK
Sbjct: 235 TKTKLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKTIIQKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FI+EGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIIEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY KV++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDMEKLRYHKVVL 393


>gi|126035204|gb|ABN72355.1| gyrase B subunit [Escherichia coli]
          Length = 384

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 143/395 (36%), Positives = 218/395 (55%), Gaps = 16/395 (4%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + F P
Sbjct: 1   GGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F+   L K  +  ++L+  V       ++  E       + F++ GG+K 
Sbjct: 60  SLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKA 112

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH
Sbjct: 113 FVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTH 169

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLV
Sbjct: 170 LAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLV 229

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447
           S + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+   
Sbjct: 230 SSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLA 289

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLAD  +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+
Sbjct: 290 GLPGKLADSQERDPALSELYLVEGDSAGGSAKQGRNRKNQALLPLKGKILNVEKARFDKM 349

Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIM 541
            ++Q++  L+ ALGC   R +Y  + LRY  +IIM
Sbjct: 350 LSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIM 384


>gi|19912077|dbj|BAB88350.1| DNA gyrase subunit B [Cytophaga sp. MBIC04661]
 gi|19912081|dbj|BAB88352.1| DNA gyrase subunit B [Cytophaga sp. MBIC04667]
 gi|19912083|dbj|BAB88353.1| DNA gyrase subunit B [Cytophaga sp. MBIC04668]
 gi|19912085|dbj|BAB88354.1| DNA gyrase subunit B [Cytophaga sp. MBIC04670]
 gi|19912087|dbj|BAB88355.1| DNA gyrase subunit B [Cytophaga sp. MBIC04681]
          Length = 391

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 142/395 (35%), Positives = 210/395 (53%), Gaps = 9/395 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+S VNALSD L  TV R   I+ Q++ RG  L P+++  +  + RGT +TF
Sbjct: 1   VSGGLHGVGVSCVNALSDHLTATVFRDGVIWQQEYERGKALYPVKRIGETED-RGTEVTF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD  IF     +    L    +  ++L+  V    +  ++  EK      E F+   GL
Sbjct: 60  HPDNTIFTQTIEYSYETLANRMRELSFLNKGVTISITDKRQKDEKG-EYVGETFFSNEGL 118

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGG 328
           K +++    NR  +   +   + EK       VE A+ +     E    Y N I T EGG
Sbjct: 119 KEFVKFLDGNRESLIQGVIAMEGEKNDIP---VEVAMIYNTSYTENLHSYVNNINTHEGG 175

Query: 329 THESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH SG R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F GQTKTK
Sbjct: 176 THLSGFRRGLTSTLKKYADASGMLDKLKFEIQGDDFREGLTAIVSVKVSEPQFEGQTKTK 235

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IR 445
           L + +    V  A+ +    YL ++P +A  +++ VI  ++ R    K RE+ ++   + 
Sbjct: 236 LGNREVSAAVSQAVSEMLTDYLEEHPDDAKTIVQKVILAAQARHAASKAREMVQRKNVMS 295

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKL+DCS+      E+F+VEGDSAGG+AK  R+R+ QA+LPLRGKILNV  A   
Sbjct: 296 GGGLPGKLSDCSEQDPEKCEIFLVEGDSAGGTAKMGRDRNFQAILPLRGKILNVEKAMQH 355

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           K+  N++I ++  ALG    ++   + L  +K+  
Sbjct: 356 KVFENEEIKNMYTALGVTIGTEEDSKALNLDKLRY 390


>gi|148611291|gb|ABQ95834.1| DNA gyrase subunit B [Acidiphilium sp. DBS2]
          Length = 400

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 139/407 (34%), Positives = 217/407 (53%), Gaps = 15/407 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D ++Y++SGGLHGVG +VVNALS+ + V + R       +F  G  ++PL       +  
Sbjct: 1   DQNSYKVSGGLHGVGAAVVNALSEWMEVRIWRDGKEHLIRFENGDTVAPLAVVGASEHGT 60

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TFRP    F     FD A   +  +  A+L+  +      ++  A      ++  F
Sbjct: 61  GTSVTFRPSAATFTR-TEFDFAIYERRLRELAFLNSGLTINLRDERHSAV-----QEAHF 114

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GGL  ++      ++ + S   T   +        VE+A+AW +     +  + N I
Sbjct: 115 RYEGGLVEFVSWLDRAKTQLFSPPVTA-FKDDAPGGIEVEFALAWNDTYHETMLCFTNNI 173

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
           +  +GGTH +G R ALTR + KYAE    K ++S+  +D+      +LSV + +P+F+ Q
Sbjct: 174 VQRDGGTHLAGFRSALTRVVSKYAESLGKKDSLSLSGEDMREGLTAVLSVKVPDPKFSSQ 233

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK KLVS + Q  V+ A+ D  +H+   +P E   + + V++ +  R   RK RE+ R+ 
Sbjct: 234 TKDKLVSSEVQPLVQAAVADALEHWFETHPKEGRLIAQKVMDAASAREAARKARELTRRK 293

Query: 443 A-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC +     +E+FIVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  
Sbjct: 294 GVLDISTLPGKLADCQERDPAKSEIFIVEGDSAGGSAKQGRDRKTQAILPLKGKILNVER 353

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQ------YREEDLRYEKVIIMT 542
           A  +++  + +I  L+ ALG            +    LRY +++IMT
Sbjct: 354 ARFDRMLGSAEIGTLITALGTGIGPAEPEQGGFDISKLRYHRIVIMT 400


>gi|33590348|gb|AAQ22714.1| DNA gyrase subunit B [Photorhabdus asymbiotica subsp. australis]
          Length = 380

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 139/388 (35%), Positives = 211/388 (54%), Gaps = 15/388 (3%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS++L + + R   +  Q +  G+P SPL+   +   + GTR+ 
Sbjct: 1   KVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKIVGET-EQTGTRVR 59

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F P    F +   F    L K  +  ++L+  V       +   E       + F++ GG
Sbjct: 60  FWPSMDTFRNNTEFQHDILAKRLRELSFLNSGVSIRLIDKRTNTE-------DHFHYEGG 112

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           +K +++   +N++ I   +F   TEK G     VE ++ W +     I  + N I   +G
Sbjct: 113 IKAFVEFLNKNKTPIHPNVFYFSTEKDGI---GVEISMQWNDGFQENIYCFTNNIPQRDG 169

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH  G R A+TR +  Y +      K  +S   DD     V ++SV + +P+F+ QTK 
Sbjct: 170 GTHLVGFRTAMTRTLNSYMDKEGSTKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKD 229

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAI 444
           KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+
Sbjct: 230 KLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVGKIIDAARAREAARKAREMTRRKGAL 289

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  
Sbjct: 290 DLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARF 349

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREED 532
           +K+ ++Q++  L+ ALGC         D
Sbjct: 350 DKMLSSQEVATLITALGCGIGRDEYNPD 377


>gi|9802387|gb|AAF99704.1| gyrase B subunit [Pseudoalteromonas sp. A316]
          Length = 396

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 142/405 (35%), Positives = 227/405 (56%), Gaps = 16/405 (3%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD+++Y++SGGLHGVG+SVVNALS++L +TV R+  +  Q ++ G+P +PL    +    
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSEKLKLTVRREGKLHEQFYTMGVPDAPLAVIGE-SET 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT + F P  + F +   F    L K  +  + L+  V    + ++E        + + 
Sbjct: 60  TGTELRFWPSGETFTN-LDFHYDILAKRLRELSSLNSGVSIILNDERE------ENKTDH 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           F + GG++ +++    N++ I   +F    E++     +VE ++ W +     I  + N 
Sbjct: 113 FKYEGGIRAFVEYLNRNKTPIHKGVFHFTHERE-EDGISVEVSMQWNDGYQENIYCFTNN 171

Query: 322 ILTDEGGTHESGLRVALTRGIKKYA----ELTQNKRAISIISDDLMISAVGILSVFIREP 377
           I   +GGTH +G R ALTR +  Y        + K   +   D        ++SV + +P
Sbjct: 172 IPQRDGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDYAREGLTAVVSVKVPDP 231

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLRRRKQR 436
           +F+ QTK KLVS + +  VE A+ + F  +L++NP++A  ++  +I+ S      R+ + 
Sbjct: 232 KFSSQTKDKLVSSEVKSAVEQAMAEKFTEFLLENPVDAKIVVGKIIDASRAREAARKARE 291

Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+ KI
Sbjct: 292 MTRRKGAMDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKPKI 351

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
           LNV  A  +K+ ++Q++  L+ ALGC   R +Y  E LRY ++II
Sbjct: 352 LNVEKARVDKMLSSQEVASLITALGCGIGRDEYNPEKLRYHRIII 396


>gi|147917477|gb|ABQ52591.1| gyrase B subunit [Vibrio alginolyticus]
          Length = 392

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 147/402 (36%), Positives = 227/402 (56%), Gaps = 15/402 (3%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K GT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           +I F P  + F +   F    L K  +  ++L+  V      ++E        + + F +
Sbjct: 60  QIRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KHDHFMY 112

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG++ ++     N++ I  +IF   +E++     +VE A+ W +     I  + N I  
Sbjct: 113 EGGIQAFVDHLNTNKTPIIEKIFHFNSERED--GISVEVAMQWNDGFQENIFCFTNNIPQ 170

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ Q
Sbjct: 171 RDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRK 441
           TK KLVS + +  VE+A+ +    +L++NP EA  +   +I+ +  R   RK R    RK
Sbjct: 231 TKDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRK 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  
Sbjct: 291 GALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
           A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 351 ARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 392


>gi|188529747|gb|ACD62560.1| GyrB [Micromonospora sp. 9]
          Length = 393

 Score =  216 bits (551), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 120/399 (30%), Positives = 207/399 (51%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS ++ V + +   ++ Q+++   P +  +   +  ++ G
Sbjct: 1   GKVYAVSGGLHGVGVSVVNALSTKMAVVIHKSGFVWRQQYTHSKPSALEK--GETTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PDP +F     FD   + +  Q  A+L   +      ++   ++ G   +  F 
Sbjct: 59  SAVSFWPDPDVFETI-DFDFQTIYRRLQEMAFLYRGITIHLLDERVPEDEDGKTREVTFR 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    +++ +   +   + E++G    ++E A+ W E     + ++ N I 
Sbjct: 118 YDGGIADFVRHLNASKNPMHKTVVEFEAEEEG---MSLEIAMQWNESYGESVYTFANNIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R  LT  + +Y    +  +    +  +D+      I+SV +  P+F GQ
Sbjct: 175 THEGGTHEEGFRSTLTSVVNRYGTDKKLLKGDEKLSGEDIREGLAAIISVKLTNPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    D    +  +N  EA  +++            ++ ++   RK
Sbjct: 235 TKTKLGNTPVKSFVQRVCNDRLVDWFDRNTAEAKTIIQKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY KV++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDMEKLRYHKVVL 393


>gi|188529730|gb|ACD62552.1| GyrB [Micromonospora sp. 18]
          Length = 393

 Score =  216 bits (551), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 127/399 (31%), Positives = 211/399 (52%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS ++ V + +   ++ Q ++   P    +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTKMFVEIHKSGNVWRQHYTNSKPSPLEK--GETTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PDP +F     FD   + +  Q  A+L+  ++     ++   E+ G   +  FY
Sbjct: 59  SAVSFWPDPDVFETV-DFDFQTIYRRLQEMAFLNRALRIHLLDERVAEEEDGRQREVTFY 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    ++S I   +   + E++G    ++E A+ W E     + ++ NTI 
Sbjct: 118 YEGGIADFVRHLNASKSPIHKTVVEFEAEEEG---MSLEIAMQWNESYGESVYTFANTIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQ
Sbjct: 175 THEGGTHEEGFRSALTSVVNRYGTDKKLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    D    +  +NP EA  ++ +           ++ ++   RK
Sbjct: 235 TKTKLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKMIITKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY KV++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGVHDDFDMEKLRYHKVVL 393


>gi|126035222|gb|ABN72364.1| gyrase B subunit [Escherichia coli]
 gi|126035224|gb|ABN72365.1| gyrase B subunit [Escherichia coli]
          Length = 383

 Score =  216 bits (551), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 142/393 (36%), Positives = 218/393 (55%), Gaps = 16/393 (4%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + 
Sbjct: 1   KVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVR 59

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ GG
Sbjct: 60  FWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGG 112

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           +K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   +G
Sbjct: 113 IKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDG 169

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK 
Sbjct: 170 GTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKD 229

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAI 444
           KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+
Sbjct: 230 KLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGAL 289

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  
Sbjct: 290 DLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARF 349

Query: 505 EKIRNNQQIMDLVQALGCRT-RSQYREEDLRYE 536
           +K+ ++Q++  L+ ALGC   R +Y  + LRY 
Sbjct: 350 DKMLSSQEVATLITALGCGIGRDEYNPDKLRYH 382


>gi|308152487|dbj|BAJ22222.1| DNA gyrase subunit B [Corynebacterium amycolatum]
          Length = 427

 Score =  216 bits (551), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 145/433 (33%), Positives = 215/433 (49%), Gaps = 43/433 (9%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  +   V R    + Q F + +P      + K     G
Sbjct: 1   SESYAVSGGLHGVGISVVNALSTRMETEVIRDGYTWYQNFDQAVPEEI--VRGKKTRGSG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T   F PDP+IF     F    + +  +  A+L+  +       +               
Sbjct: 59  TTQRFWPDPEIFETT-DFKFDTISRRLREMAFLNKGLTITLVDKRVSEEELEAEALAEQA 117

Query: 250 ----------------EIAEKYGIPE--KEEFYFPGGLKTYLQTKLENRSLISSEIFTGK 291
                           E AEK   P+  ++ F++P GL+ Y++T  +++++I   I +  
Sbjct: 118 ETESAEIAKDAAEEQKEQAEKTTKPKERRKVFHYPNGLRDYVETLNKSKNIIHPTIISFD 177

Query: 292 TEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
               G     VE A+ W       + ++ NTI T EGGTHE G R ALT  + +YA   +
Sbjct: 178 AAGDGH---EVEIAMQWNSGYSESVHTFANTINTIEGGTHEEGFRSALTSLMNRYAREHR 234

Query: 351 --NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
              ++  ++  +D       ++SV + +P+F GQTKTKL + + +  V+    +   H+L
Sbjct: 235 LLKEKENNLSGEDCREGLAAVISVKVADPQFEGQTKTKLGNTEVRSFVQRMTNEHIGHWL 294

Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
             NP EA  ++   I  +  R   RK R+ V RK+A     LPGKLADC       +ELF
Sbjct: 295 EANPAEAKAIVNKAIASAHARQAARKARDLVRRKSATDLGGLPGKLADCRSKDPKQSELF 354

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           IVEGDSAGGSAK  RN   QA+LPLRGKILNV  A  +K   N ++  ++ ALG     +
Sbjct: 355 IVEGDSAGGSAKAGRNSLFQAILPLRGKILNVEKARLDKTLKNNEVQAIITALGTGIHDE 414

Query: 528 YREEDLRYEKVII 540
           +  E LRY K+++
Sbjct: 415 FDIEKLRYHKIVL 427


>gi|295388323|gb|ADG03057.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  216 bits (551), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 150/404 (37%), Positives = 230/404 (56%), Gaps = 15/404 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+I F P  + F +   F    L K  +  ++L+  V      ++E        +++ F
Sbjct: 60  GTQIRFWPSAETFPNT-EFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KQDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ ++Q    N++ I  +IF    E++     +VE A+ W +     I  + N I
Sbjct: 113 MYEGGIQAFVQHLNTNKTPIIEKIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+
Sbjct: 171 PQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE+A+ +    +LV+NP EA  +   +I+ +  R   RK R    
Sbjct: 231 SQTKDKLVSSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|84310534|gb|ABC55415.1| DNA gyrase subunit B [Bacillus licheniformis]
          Length = 390

 Score =  216 bits (551), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 144/399 (36%), Positives = 216/399 (54%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            S Y++SGGLHGVG SVVNALS EL VTV R   +  Q+F RG+P + L+   +      
Sbjct: 1   GSGYKVSGGLHGVGASVVNALSTELDVTVYRDGKVHYQEFERGVPKADLKVIGETEVTGT 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
               F+PDP+IF +   +D   L    +  A+L+  VK      ++  E+        + 
Sbjct: 61  -TTHFKPDPEIFTETTEYDYDTLATRVRELAFLTKGVKITIEDKRDGKERKNE-----YC 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K+Y++    +R ++  E    +  K G    TVE A+ + +     I S+ N I 
Sbjct: 115 YEGGIKSYVEHLNRSREVVHEEPVYIEGSKDGI---TVEVALQYNDSYTSNIYSFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G +  LT  I  YA       +   ++  +D+      I+S+   +P+F G
Sbjct: 172 TYEGGTHEAGFKTGLTGVINDYARRNGVFKESDPNLSGEDVREGLTAIISIKHPDPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNR 440
           QTKTKL + +A+   +    +  + +L++NP  A K++E  V+        ++ +    R
Sbjct: 232 QTKTKLGNSEARTITDALFSEALEKFLLENPDSAKKIVEKGVMAARARMAAKKARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 292 KSALEVSNLPGKLADCSSKDPTISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
            A  +KI +N ++  ++ ALG      +  E  RY KV+
Sbjct: 352 KARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVV 390


>gi|295388290|gb|ADG03041.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  216 bits (551), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 149/404 (36%), Positives = 230/404 (56%), Gaps = 15/404 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+I F P  + F +   F    L K  +  ++L+  V      ++E        +++ F
Sbjct: 60  GTQIRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KQDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ ++Q    N++ I  +IF    E++     +VE A+ W +     I  + N I
Sbjct: 113 MYEGGIQAFVQHLNTNKTPIIEKIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  + +      K   +   +D       ++SV + +P+F+
Sbjct: 171 PQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGNDAREGLTAVVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE+A+ +    +LV+NP EA  +   +I+ +  R   RK R    
Sbjct: 231 SQTKDKLVSSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|126035238|gb|ABN72372.1| gyrase B subunit [Enterobacter cloacae]
          Length = 382

 Score =  216 bits (551), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 144/393 (36%), Positives = 219/393 (55%), Gaps = 16/393 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS +L + + R+  I  Q ++ G+P +PL       +K GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYTHGVPQAPLAVTGDT-DKTGTMVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ GG+K
Sbjct: 60  PSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDNKE-------DHFHYEGGIK 112

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   +GGT
Sbjct: 113 AFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGT 169

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KL
Sbjct: 170 HLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKL 229

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRK 446
           VS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+  
Sbjct: 230 VSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDL 289

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 290 AGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 349

Query: 507 IRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
           + ++Q++  L+ ALGC   R +Y  + LRY  +
Sbjct: 350 MLSSQEVATLITALGCGIGRDEYNPDKLRYHSI 382


>gi|6729231|dbj|BAA89737.1| DNA gyrase subunit B [Micromonospora rosaria]
          Length = 393

 Score =  216 bits (551), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 122/399 (30%), Positives = 207/399 (51%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V + +   ++ Q+++   P    +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKAGFVWRQQYTNSKPSPLEK--GETTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PDP +F      D   + +  Q  A+L+  +      ++   ++ G   +  F 
Sbjct: 59  SAVSFWPDPDVFETV-DLDFQTIYRRLQEMAFLNRGLTIHLLDERVAEDEDGKQREVTFC 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    +++ I   +     E++G    +VE A+ W E     + ++ NTI 
Sbjct: 118 YKGGIADFVRHLNASKNPIHKSVVEFGAEEEG---MSVEIAMQWNESYGESVYTFANTIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQ
Sbjct: 175 THEGGTHEEGFRAALTGIVNRYGADKKLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    +    +  +NP EA  ++ +           ++ ++   RK
Sbjct: 235 TKTKLGNTPVKSFVQRVCNEWLVDWFDRNPAEAKIIITKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY K+++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDIEKLRYHKIVL 393


>gi|2196832|gb|AAB80833.1| DNA gyrase beta-subunit [Shewanella algae]
          Length = 419

 Score =  216 bits (551), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 134/400 (33%), Positives = 217/400 (54%), Gaps = 15/400 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T L   GKF++ + ++  G   VG+SVVNALS++L +T+ R   ++ Q +  G P 
Sbjct: 1   EVIMTVLRPLGKFEDPSKDVYVGWPRVGVSVVNALSEKLQLTIRRDGKVYEQFYKHGEPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            P+++  +     GT I F P  + F +   F    L K  +  ++L+  V      +++
Sbjct: 61  EPIKEIGEATK-TGTEIRFWPTHETFTET-EFHYELLAKRIRELSFLNSGVGIRLIDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             +       E F++ GG+K +++    N++ ++ ++F    E+      TVE A+ W +
Sbjct: 119 NKD-------EFFHYEGGIKAFVEYLNRNKTPVNKDVFHFSQERDD--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R ALTR +  Y E      K   +   DD      
Sbjct: 170 GFQESIFCFTNNIPQRDGGTHLAGFRAALTRNLNNYMENEGFNKKGKTNATRDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            ++SV + +P+F+ QTK KLVS + +  VE  + +  + YL++NP  + +++  +IE + 
Sbjct: 230 AVVSVKVPDPKFSSQTKDKLVSTEVKGPVEQTMGEKLNDYLLENPAHSKRIVGKIIEAAR 289

Query: 428 ERLRRRKQREVNR-KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK RE+ R K  +    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR N
Sbjct: 290 AREGARKAREMTRCKGVLDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS 526
           QA+LPL+GKI  V  A  +K+ ++Q++   + ALGC    
Sbjct: 350 QAILPLKGKIFKVEKARFDKMLSSQEVATXINALGCGIGC 389


>gi|18147185|dbj|BAB83073.1| DNA gyrase subunit B [Alcanivorax sp. Can-2]
 gi|18147187|dbj|BAB83074.1| DNA gyrase subunit B [Alcanivorax sp. Can-3]
 gi|18147189|dbj|BAB83075.1| DNA gyrase subunit B [Alcanivorax sp. Can-4]
 gi|18147191|dbj|BAB83076.1| DNA gyrase subunit B [Alcanivorax sp. Hak-1]
 gi|18147193|dbj|BAB83077.1| DNA gyrase subunit B [Alcanivorax sp. Hak-2]
          Length = 392

 Score =  216 bits (551), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 153/404 (37%), Positives = 226/404 (55%), Gaps = 18/404 (4%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D++TY++SGGLHGVG+SVVNALS+EL +T+ R   +  Q ++ G+P  PLE      +  
Sbjct: 1   DDNTYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYNHGVPAKPLEVVG-TTDSS 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + FRP P+ F +   F    L K  +  ++L+  V+     ++   E       + F
Sbjct: 60  GTAVHFRPSPETFSNI-KFHYDILAKRLRELSFLNSGVRIHLMDERSGDE-------DVF 111

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
            + GGL  ++     N++ ++       + E+ G     VE A+ W +     I  + N 
Sbjct: 112 EYEGGLSAFVSYLNTNKTPLNQVFHFNYEREEDGI---AVEVAMQWNDSYQENIFCFTNN 168

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R ALTR +  Y +      K   S   DD       ++SV + +P+F
Sbjct: 169 IPQRDGGTHLAGFRAALTRTLNSYMDKEGFLKKEKASPSGDDAREGLTAVISVKVPDPKF 228

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REV 438
           + QTK KLVS + +  VE  + D F  YL++NP EA  +++ +I+ +  R   RK     
Sbjct: 229 SSQTKDKLVSSEVKSAVEQTMGDLFQDYLLENPGEARSIVQKIIDAARARDAARKAREMT 288

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC Q     +EL+IVEGDSAGGSAKQ R+R NQA+LPL+GKILN
Sbjct: 289 RRKGALDIAGLPGKLADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILN 348

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIM 541
           V  A  +K+ ++Q++  L+ ALGC   R +Y  E LRY ++IIM
Sbjct: 349 VEKARFDKMLSSQEVGTLITALGCGIGRDEYNIEKLRYHRIIIM 392


>gi|295388325|gb|ADG03058.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  216 bits (551), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 151/404 (37%), Positives = 231/404 (57%), Gaps = 15/404 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+I F P  + F +   F    L K  +  ++L+  V      ++E        +++ F
Sbjct: 60  GTQIRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KQDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ ++Q    N++ I  +IF    E++     +VE A+ W +     I  + N I
Sbjct: 113 MYEGGIQAFVQHLNTNKTPIIEKIFHFDLERED--GVSVEVAMQWNDGFQENIFCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+
Sbjct: 171 PQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VN 439
            QTK KLVS + +  VE+A+ +    +LV+NP EA  +   +I+ +  R   RK RE   
Sbjct: 231 SQTKDKLVSSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREVTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|2196840|gb|AAB80837.1| DNA gyrase beta-subunit [Shewanella oneidensis MR-1]
          Length = 419

 Score =  216 bits (551), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 150/430 (34%), Positives = 231/430 (53%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T L    KF+  T E+      VG+SVVNALS +L +T+ R   +  Q ++ G+P 
Sbjct: 1   EVIMTVLCRVCKFEVLTNEVYVDRPRVGVSVVNALSKKLQLTIRRDGKVHEQFYTHGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+++        GT I F P  + F +   F    L K  +  ++L+  V      +++
Sbjct: 61  APIKEIGDATK-TGTEIRFWPSEQTFSNV-EFHFEILAKRVRELSFLNSGVGIRLVDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + E F + GG+  ++     N++ ++ ++F    E+      TVE A+ W +
Sbjct: 119 N-------KNEFFKYEGGISAFVHYLNRNKNPVNKDLFHFMQERDD--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R ALTR +  Y E      K   +   DD      
Sbjct: 170 GYQENIFCFTNNIPQRDGGTHLAGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            ++SV + +P+F+ QTK KLVS + +  VE  + +  + YL++NP +A  ++  +++ + 
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSNEVKAAVEQTMGEKLNDYLLENPADAKLIVGKIVDAAR 289

Query: 428 ERLRRRKQREVN-RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK RE+  RK A     LPGKLADC +     +E++IVEG+ AGGSAKQ RNR N
Sbjct: 290 AREAARKAREMTLRKGAFDLGGLPGKLADCQEKDPGLSEIYIVEGEFAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK-VIIMTDAD 545
           QA+LPL+GKILNV  A  +K+  +Q++  L+ ALGC         D    K V+IMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLFSQEVGTLITALGCGIGGVVYTLDKTRGKYVVIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHILTLL 419


>gi|6729257|dbj|BAA89750.1| DNA gyrase subunit B [Mycobacterium kansasii]
 gi|6729305|dbj|BAA89774.1| DNA gyrase subunit B [Mycobacterium kansasii]
 gi|6729307|dbj|BAA89775.1| DNA gyrase subunit B [Mycobacterium kansasii]
 gi|6729309|dbj|BAA89776.1| DNA gyrase subunit B [Mycobacterium kansasii]
 gi|6729311|dbj|BAA89777.1| DNA gyrase subunit B [Mycobacterium kansasii]
 gi|6729313|dbj|BAA89778.1| DNA gyrase subunit B [Mycobacterium kansasii]
 gi|6729315|dbj|BAA89779.1| DNA gyrase subunit B [Mycobacterium kansasii]
          Length = 419

 Score =  216 bits (551), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 137/425 (32%), Positives = 213/425 (50%), Gaps = 35/425 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y ISGGLHGVG+SVVNALS  L V + R    +SQ + +  P+    K+     K G
Sbjct: 1   SDAYAISGGLHGVGVSVVNALSTRLEVEIKRDGHEWSQVYEKSEPMGL--KQGAPTKKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T + F  DP +F     +D   + +  Q  A+L+  +    +  +               
Sbjct: 59  TTVRFWADPNVFETT-EYDFETVARRLQEMAFLNKGLTINLTDQRVTQDEVVDEVVSDVA 117

Query: 250 ----------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
                       +      +K  F++PGGL  +++     ++ I S I     +  G   
Sbjct: 118 EAPKSASEKAAESAAPHKVKKRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGPGH-- 175

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
             VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +   ++  +
Sbjct: 176 -EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKEKDPN 234

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           +  DD+      ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A 
Sbjct: 235 LTGDDIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPADAK 294

Query: 417 KLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAG
Sbjct: 295 TVVNKAVSSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAG 354

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           GSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY
Sbjct: 355 GSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIARLRY 414

Query: 536 EKVII 540
            K+++
Sbjct: 415 HKIVL 419


>gi|148536436|gb|ABQ85770.1| DNA gyrase subunit B [Aliivibrio wodanis]
          Length = 404

 Score =  216 bits (551), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 158/413 (38%), Positives = 231/413 (55%), Gaps = 14/413 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R+  IF Q +  G P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTINRKGEIFQQTYCHGEPQAPLAVVGT 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
                  +I F P  + F +   F    L K  +  ++L+  V       +E        
Sbjct: 61  TDTTGT-KIRFWPSEQTFTNV-EFVYDILAKRLRELSFLNSGVSIILQDMRE------ED 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F F GG++ ++     N++ +  +IF   +E+K      VE A+ W +     I  
Sbjct: 113 KSDHFMFEGGIQAFVTHLNRNKTPVHQKIFYFDSERK-EDGIVVEVAMQWNDSYQENIFC 171

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           Y N I   +GG H SG R ALTR +  + +      K   S   DD       ++SV + 
Sbjct: 172 YTNNIPQRDGGAHLSGFRSALTRTLNSFMDKEGFSKKAKSSASGDDAREGLTAVVSVKVP 231

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           +P+F+ QTK KLVS + +  VE+A+ +    +L +NP EA  +   +I+ +  R   RK 
Sbjct: 232 DPKFSSQTKDKLVSSEVKSAVESAMNEKLAEFLAENPGEAKMVCSKIIDAARAREAARKA 291

Query: 436 R-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           R    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 292 REMTRRKGALDIAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 351

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADV 546
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADV
Sbjct: 352 KILNVEKARFDKMISSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMTDADV 404


>gi|51587621|emb|CAH19216.1| gyrase B [Corallococcus coralloides]
          Length = 392

 Score =  216 bits (551), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 141/404 (34%), Positives = 216/404 (53%), Gaps = 17/404 (4%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y++SGGLHGVG++ VN LS+   V V R   ++ Q ++RG+   P ++     +KRGT
Sbjct: 1   GAYKVSGGLHGVGVTCVNFLSEWFKVRVQRDGKVYEQAYARGVSNGPPQETG-TTDKRGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            I F+PDP +      F+   L +  +  A+L+  +      ++   E         F F
Sbjct: 60  LIHFKPDPTVMDTV-DFNFETLSQRLRELAFLNAGLLITIRDERTQKEHD-------FKF 111

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG+ ++++   + +  +  +    K+E++G    ++E A+ W +     I ++ N I T
Sbjct: 112 DGGISSFVEYLNKAKEALHDKPVYIKSEREGV---SLEIAMQWNDGYDERIFTFANNINT 168

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQ 382
            EGG+H SG + ALTR +  YAE     + +      +D       ++SV +  P+F GQ
Sbjct: 169 HEGGSHLSGFKAALTRTLNSYAERGGLWKDLKETPAGEDAREGLSAVISVKLSNPQFEGQ 228

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRK 441
           TKTKL + + +  VE  + D    +L +NP  A K++  +          R+ +  V RK
Sbjct: 229 TKTKLGNSEVKGLVEQMVNDQLATFLEENPPLAKKVVAKIGDACRARLAARKARETVRRK 288

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC     H +EL+IVEGDSAGGSAKQ R+R NQA+LPLRGKILNV  
Sbjct: 289 GVLDGGGLPGKLADCQSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEK 348

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           A  EK+  + +I+ L+ ALG       Y  E  RY ++I+MTDA
Sbjct: 349 ARFEKMLTSAEIVTLITALGTGIGAEDYDPEKARYHRIILMTDA 392


>gi|313747320|dbj|BAJ41207.1| DNA gyrase subunit B [Terribacillus halophilus]
          Length = 390

 Score =  216 bits (551), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 140/400 (35%), Positives = 214/400 (53%), Gaps = 14/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS  L VTV R   I  Q F RG+P   L+   +  ++ G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTNLDVTVHRDGKIHEQSFERGVPQGDLKVTGE-SDRTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F+PDP+IF +   ++   LL   +  A+L+  +       ++   +        F+
Sbjct: 60  TITHFKPDPEIFTETTAYNKETLLVRIRELAFLNKGLAISLEDKRDEESETIT-----FH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+++Y++    ++ ++    +     +      TVE A+ + +     I S+ N I 
Sbjct: 115 YEGGIRSYVEHLNRSKEVLHEPFYA----ENTDSEITVEIALQYNDGYTSSIYSFANNIH 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G +  LTR I  YA      +    ++  DD+      I+S+   +P+F G
Sbjct: 171 TYEGGTHEAGFKSGLTRVINDYARKNNMFKENDPNLSGDDVREGLTAIISIKHPDPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNR 440
           QTKTKL + +A++  + A  + F  +L +NP  A  ++E  ++        +R +    R
Sbjct: 231 QTKTKLGNSEARQVTDAAFTELFSKFLFENPDTARIVVEKGLMASRARIAAKRARELTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADCS   A  +EL++VEGDSAGGSAKQ R+R  QA+LPLRGKI+NV 
Sbjct: 291 KGALEVSSLPGKLADCSSKDASISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKIINVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +KI  N +I  ++ ALG      +     RY K++I
Sbjct: 351 KARLDKILANNEIRAMITALGTGIGEDFDISKARYHKLVI 390


>gi|51921648|gb|AAU13950.1| gyrase B subunit [Vibrio vulnificus]
          Length = 390

 Score =  216 bits (551), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 148/400 (37%), Positives = 223/400 (55%), Gaps = 15/400 (3%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G+P +PL          GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSEKVQLTIYRGGHIHTQTYHHGVPQAPLTVVGDTEK-TGTTVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F    L K  +  ++L+  V      ++E  +K      + F + GG++
Sbjct: 60  PSAETFTNI-EFHYDILAKRLRELSFLNSGVSIKLQDEREEDKK------DHFMYEGGIQ 112

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            ++     N++ I  ++F   TE++     +VE A+ W +     I  + N I   +GGT
Sbjct: 113 AFVTHLNRNKTPIHEKVFHFNTERED--GISVEVAMQWNDGFQENIYWFTNNIPQRDGGT 170

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R ALTR +  Y +      K   +   DD       ++SV + +P+F+ QTK KL
Sbjct: 171 HLAGFRAALTRTLNSYMDKEGYSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKL 230

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRK 446
           VS + +  VE+ + D  + +L ++P EA  +   +I+ +  R   RK R    RK A+  
Sbjct: 231 VSSEVKSAVESFMADKLNDFLAEHPSEAKTVCSKIIDAARAREAARKAREMTRRKGALDL 290

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 291 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 350

Query: 507 IRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
           + ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDAD
Sbjct: 351 MLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDAD 390


>gi|295388354|gb|ADG03072.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  216 bits (551), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 150/404 (37%), Positives = 230/404 (56%), Gaps = 15/404 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+I F P  + F +   F    L K  +  ++L+  V      ++E        +++ F
Sbjct: 60  GTQIRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KQDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ ++Q    N++ I  +IF    E++     +VE A+ W +     I  + N I
Sbjct: 113 MYEGGIQAFVQHLNTNKTPIIEKIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+
Sbjct: 171 PQRDGGTHLAGFRAALTRTLNSFMDEEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE+A+ +    +LV+NP EA  +   +I+ +  R   RK R    
Sbjct: 231 SQTKDKLVSSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|188529732|gb|ACD62553.1| GyrB [Micromonospora sp. 53]
          Length = 393

 Score =  216 bits (551), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 125/399 (31%), Positives = 210/399 (52%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V + +   ++ Q+++   P    +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKSGFVWRQQYNNSKPSPLDK--GETTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PDP +F     FD   + +  Q  A+L+  ++     ++   E+ G   +  F+
Sbjct: 59  SAVSFWPDPDVFETV-DFDFQTIYRRLQEMAFLNRALRIHLLDERVAEEEDGRQREVTFF 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    ++S I   +   + E++G    ++E A+ W E     + ++ NTI 
Sbjct: 118 YEGGIADFVRHLNASKSPIHKTVVEFEAEEEG---MSLEIAMQWNESYGESVYTFANTIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQ
Sbjct: 175 THEGGTHEEGFRSALTSVVNRYGADKRLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    D    +  +NP EA  ++ +           ++ ++    K
Sbjct: 235 TKTKLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKMIITKASQAARARIAAQQARKLARHK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY KV++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDMEKLRYHKVVL 393


>gi|295388340|gb|ADG03065.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  216 bits (551), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 150/404 (37%), Positives = 229/404 (56%), Gaps = 15/404 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+I F P  + F +   F    L K  +  ++L+  V      ++E        +++ F
Sbjct: 60  GTQIRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KQDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ ++Q    N++ I  +IF    E++     +VE A+ W +     I  + N I
Sbjct: 113 MYEGGIQAFVQHLNTNKTPIIEKIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+
Sbjct: 171 PQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE+A+ +    +LV+NP EA  +   +I+ +  R   RK R    
Sbjct: 231 SQTKDKLVSSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
             A  +K+ ++Q++  L  ALGC   R +Y  + LRY  +IIMT
Sbjct: 351 EKARFDKMLSSQEVATLTTALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|307939290|gb|ADN95836.1| DNA gyrase B [Hymenobacter antarcticus]
          Length = 424

 Score =  216 bits (551), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 159/430 (36%), Positives = 238/430 (55%), Gaps = 27/430 (6%)

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           +T   AGGKFD  +Y++SGGLHGVG+S VNALS +L VTV R    + Q++  GIP   +
Sbjct: 1   MTVXXAGGKFDKGSYKVSGGLHGVGVSCVNALSTDLKVTVRRNGHKYEQEYKIGIPQYDV 60

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           ++   +  + GT + F PD  IF +   +    +    +  +YL+  ++   +  +E  E
Sbjct: 61  KEVG-LSEEHGTEVQFLPDASIFTE-TEYRYDTVAGRLRDLSYLNKGIRITLTDRREKLE 118

Query: 254 KYGIPEKEEFYFPGGLKTYLQT-KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
             G+   EEFY  GGL+ ++Q    E R  + SE    ++EK GT    VE A+ +    
Sbjct: 119 -GGVFRGEEFYSTGGLRDFVQYLDGEQRPSLLSEPIYVESEKGGTP---VEVALQYNTSY 174

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGI 369
              + SY N I T EGGTH +G R A+TR +K Y +  +   K  + I  DD       +
Sbjct: 175 QENVYSYVNNINTIEGGTHVAGFRSAVTRVLKTYGDKNKLFEKAKVEITGDDFREGLTAV 234

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           +SV ++EP+F GQTKTKL + +    V + + +    YL +NP +A +++E VI  ++ R
Sbjct: 235 ISVKVQEPQFEGQTKTKLGNSEVSGAVNSVVGEILTQYLDENPNQANRIMEKVILAAKAR 294

Query: 430 LRRRKQREVNRKTAIRKLRL-PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
           +  RK +++ ++  +      PGKLADCS++     EL++VEGDSAGG+AKQ RNR+ QA
Sbjct: 295 IAARKAKDMVQRKGVLSSNSLPGKLADCSESDPEICELYLVEGDSAGGTAKQGRNRAFQA 354

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY----------------REED 532
           +LPLRGKILNV  A   +I  N++I +++ ALG     +                     
Sbjct: 355 ILPLRGKILNVEKAQEHRILENEEIKNMITALGVTFNERKSLAFTTDDDGTESGPLNFSK 414

Query: 533 LRYEKVIIMT 542
           LRY KVIIMT
Sbjct: 415 LRYHKVIIMT 424


>gi|295388319|gb|ADG03055.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  216 bits (551), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 149/404 (36%), Positives = 229/404 (56%), Gaps = 15/404 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+I F P  + F +   F    L K  +  ++L+  V      ++E        +++ F
Sbjct: 60  GTQIRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KQDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ ++Q    N++ I  +IF    E++     +VE A+ W +     I  + N  
Sbjct: 113 MYEGGIQAFVQHLNTNKTPIIEKIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNNT 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+
Sbjct: 171 PQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE+A+ +    +LV+NP EA  +   +I+ +  R   RK R    
Sbjct: 231 SQTKDKLVSSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|295388292|gb|ADG03042.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388294|gb|ADG03043.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388296|gb|ADG03044.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388298|gb|ADG03045.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388300|gb|ADG03046.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388306|gb|ADG03049.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388317|gb|ADG03054.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388321|gb|ADG03056.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388329|gb|ADG03060.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388332|gb|ADG03061.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388334|gb|ADG03062.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388338|gb|ADG03064.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388342|gb|ADG03066.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388346|gb|ADG03068.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388352|gb|ADG03071.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388356|gb|ADG03073.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388358|gb|ADG03074.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388360|gb|ADG03075.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388362|gb|ADG03076.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388366|gb|ADG03078.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388368|gb|ADG03079.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388374|gb|ADG03082.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388376|gb|ADG03083.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388380|gb|ADG03085.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388382|gb|ADG03086.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295388390|gb|ADG03090.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|295442416|gb|ADG21187.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  216 bits (551), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 150/404 (37%), Positives = 230/404 (56%), Gaps = 15/404 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+I F P  + F +   F    L K  +  ++L+  V      ++E        +++ F
Sbjct: 60  GTQIRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KQDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ ++Q    N++ I  +IF    E++     +VE A+ W +     I  + N I
Sbjct: 113 MYEGGIQAFVQHLNTNKTPIIEKIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+
Sbjct: 171 PQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE+A+ +    +LV+NP EA  +   +I+ +  R   RK R    
Sbjct: 231 SQTKDKLVSSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|66357004|ref|XP_625680.1| DNA topoisomerase II [Cryptosporidium parvum Iowa II]
 gi|46226680|gb|EAK87659.1| DNA topoisomerase II [Cryptosporidium parvum Iowa II]
          Length = 1797

 Score =  216 bits (551), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 96/538 (17%), Positives = 199/538 (36%), Gaps = 17/538 (3%)

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           L+G  I + +  S  L    +R N   + + +     +  +K    R  R T        
Sbjct: 271 LNGSLIPIKDFKSYTLLYLKSRMNNTNNIENNNNNNNNNEKKTSTTRTLRNTNKKNMSKN 330

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
             + D+             +           W  + + ++K       +    G      
Sbjct: 331 NSYDDEFENYNVENEDEYDNNFEEDIMEDDEWDDEPKSSKKKNSNSNSKKKKLGQNGNGS 390

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESG 333
            + L       S+  +     +   +  +  + +   +     S+ N+I T +GGTH S 
Sbjct: 391 SSSLILSGGGGSDTNSPLIIYESVPKWEIVISESDGGQFQ-HVSFVNSICTIKGGTHISY 449

Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
           +   L   I K    T+NK  + + S+ +       +   I  P F  QTK  L +  ++
Sbjct: 450 VLDPLINAILK-KVQTKNKGGMDVKSNHVKNHIWIFIKCLIVNPSFDSQTKETLTTKVSK 508

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLPGK 452
                 L +   + +V++ I    L+   + +  E + + +  ++    + +  +     
Sbjct: 509 FGSVCTLSEKTINSVVKSSIVENVLMWAQLKQSMELKKKMKSNQKNTVTSRLLGIPKLED 568

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRN 509
             +     +    L + EGDSA  S     +   R    V PLRGK+LNV  A  ++   
Sbjct: 569 ANEAGGPHSKKCTLILTEGDSAKTSCLAGLSIVGRDYFGVFPLRGKLLNVREASFKQQIG 628

Query: 510 NQQIMDLVQALGCRTRSQYRE--EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
           N +I ++++ LG     +Y     +LRY  +++MTD D DG+HI  L++   +     LI
Sbjct: 629 NVEIQNILKILGLGIGQKYDNGPVNLRYGSLMLMTDQDHDGSHIKGLIINLIHYYWPSLI 688

Query: 568 E-QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626
             +  L     P+ +  +G+  +        ++  +    +  G      +KGLG     
Sbjct: 689 HFRGFLKQFVTPIVKAKKGSNEISFFTLYEYEQWRKNNSSNLNG-WRFKYYKGLGTSTDL 747

Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER--ASFID 682
           + KE        ++    ++      +    + +K    + ++R  +I+     +++D
Sbjct: 748 EFKEYFTKIENHSIEFDWMDD--QDDEAIDMAFSK---KRTEDRKNWIESYKEGTYVD 800



 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 55/255 (21%), Positives = 94/255 (36%), Gaps = 43/255 (16%)

Query: 22  KLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD----------- 70
              K    P     + ++  + Y          +E + +RP  YIG T+           
Sbjct: 15  SNSKITSKPKMVNKSKKTVEERYQKK-----TQIEHILLRPDTYIGSTEFHEQALWVWDD 69

Query: 71  ------------EKALHHLFSEVIDNAMD----------EVIAGYANLIEVSLDGNG-FL 107
                          L+ +F E++ NA D            I      I+V ++     +
Sbjct: 70  SNMKMVYKTINYVPGLYKIFDEILVNAADVKAREISTKNNHIFEKCTCIKVEINREKKEI 129

Query: 108 TVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSD 167
           TV ++G GIP+E H +       E+I   L     +D++   ++GG +G G  + N  S 
Sbjct: 130 TVFNDGEGIPIEIHREH-QVYVPELIFGHLLTSDNYDDNEDRVTGGRNGFGAKLTNIFSK 188

Query: 168 ELHVTVARQN--TIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDA 224
           E  V     N   IF   +   +     E  ++    K   +ITF+PD   FG+   FD 
Sbjct: 189 EFKVECGDNNTGRIFKMTWYDNMSKKSEENIKENYSGKSYVKITFKPDLSRFGNMKDFDD 248

Query: 225 ARLLKMTQSKAYLSG 239
             +  + +    +SG
Sbjct: 249 DIISLLNKRVYDISG 263


>gi|6729180|dbj|BAA89723.1| DNA gyrase subunit B [Micromonospora purpureochromogenes]
          Length = 393

 Score =  216 bits (551), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 123/399 (30%), Positives = 207/399 (51%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS ++ V + +   ++ Q++S   P    +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTKMAVEIHKSGFVWRQQYSNSKPTPLEK--GETTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PDP +F     FD   + +  Q  A+L+  +      ++    + G   +  F 
Sbjct: 59  SAVSFWPDPDVFETV-DFDFQTIYRRLQEMAFLNRGITIHLLDERVPEGEEGKIREVTFR 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    +++ +   +     E++G    +VE A+ W E     + ++ N I 
Sbjct: 118 YDGGIADFVRHLNASKNPMHKTVVEFDAEEEG---MSVEIAMQWNESYGESVYTFANNIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQ
Sbjct: 175 THEGGTHEEGFRSALTSVVNRYGTDKKLLKGDEKLSGEDIREGLAAIISVKLTNPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    D    +  +NP EA  +++            ++ ++   RK
Sbjct: 235 TKTKLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKTIIQKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY K+++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDIEKLRYHKIVL 393


>gi|19912033|dbj|BAB88328.1| DNA gyrase subunit B [Cytophaga sp. MBIC04671]
 gi|19912035|dbj|BAB88329.1| DNA gyrase subunit B [Cytophaga sp. MBIC04672]
 gi|19912037|dbj|BAB88330.1| DNA gyrase subunit B [Cytophaga sp. MBIC04673]
 gi|19912039|dbj|BAB88331.1| DNA gyrase subunit B [Cytophaga sp. MBIC04674]
 gi|19912047|dbj|BAB88335.1| DNA gyrase subunit B [Cytophaga sp. MBIC04684]
 gi|19912049|dbj|BAB88336.1| DNA gyrase subunit B [Cytophaga sp. MBIC04662]
 gi|19912137|dbj|BAB88380.1| DNA gyrase subunit B [Cytophaga sp. MBIC04683]
          Length = 391

 Score =  216 bits (550), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 142/395 (35%), Positives = 209/395 (52%), Gaps = 9/395 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+S VNALS+ L  TV R   ++ Q++ RG  L P++   +  ++ GT +TF
Sbjct: 1   VSGGLHGVGVSCVNALSNHLKATVHRDGKVWEQEYERGKSLYPVKSVGET-DETGTIVTF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD  IF     +    L    +  ++L+  V    +  + + +K G    E FY   GL
Sbjct: 60  IPDDSIFTQTTEYSYETLANRMRELSFLNKGVTISITDKR-VKDKEGEYLSETFYSDAGL 118

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGG 328
             +++     R  +   +   + EK G     VE A+ +     E    Y N I T EGG
Sbjct: 119 SEFVKFLDGTREPLIQGVIAMEGEKNGIP---VEVAMVYNTSYTENLHSYVNNINTHEGG 175

Query: 329 THESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH SG R  LT  +KKYA+ +    K    +  DD       I+SV + EP+F GQTKTK
Sbjct: 176 THLSGFRRGLTSTLKKYADSSGMLEKLKFEVQGDDFREGLTAIVSVKVAEPQFEGQTKTK 235

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIR 445
           L + +    V  A+ +    YL ++P +A  +++ VI  ++ R    K RE+  RKT + 
Sbjct: 236 LGNREVSSAVSQAVSEMLTDYLEEHPDDAKVIVQKVILAAQARHAATKAREMVQRKTVMS 295

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKL+DCS+      E+F+VEGDSAGG+AK  R+R  QA+LPLRGKILNV  A   
Sbjct: 296 IGGLPGKLSDCSEQDPAQCEVFLVEGDSAGGTAKMGRDRKFQAILPLRGKILNVEKAMQH 355

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           K+  N++I ++  ALG    ++   + L  EK+  
Sbjct: 356 KVFENEEIKNIYTALGVTIGTEEDSKALNLEKLRY 390


>gi|188529762|gb|ACD62567.1| GyrB [Micromonospora sp. 11]
          Length = 393

 Score =  216 bits (550), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 127/399 (31%), Positives = 208/399 (52%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V + +   ++ Q++    P    E   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKSGFVWRQQYHNSKPDPLEE--GETADRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PDP +F     FD   + +  Q  A+L+  +      ++    + G P +  FY
Sbjct: 59  SAVSFWPDPDVFETT-DFDFQTICRRLQEMAFLNRALSIHLLDERVAEGEEGKPREVTFY 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    +++ +   +     E++G    +VE A+ W E     + ++ NTI 
Sbjct: 118 YEGGIADFVRHLNASKNPMHKTVVEFAAEEEG---MSVEIAMQWNESYGESVYTFANTIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQ
Sbjct: 175 THEGGTHEEGFRAALTSVVNRYGADKKLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    D    +  +NP EA  +++            ++ ++   RK
Sbjct: 235 TKTKLGNTPVKSFVQRVSNDRLVDWFDRNPAEAKTIIQKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPVRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY KV++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDMEKLRYHKVVL 393


>gi|308152523|dbj|BAJ22240.1| DNA gyrase subunit B [Mycobacterium gordonae]
 gi|308152525|dbj|BAJ22241.1| DNA gyrase subunit B [Mycobacterium gordonae]
          Length = 421

 Score =  216 bits (550), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 139/427 (32%), Positives = 218/427 (51%), Gaps = 35/427 (8%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
            +NS Y +SGGLHGVG+SVVNALS  L V + R    +SQ + R +P +   K+ +   K
Sbjct: 1   GENSGYTVSGGLHGVGVSVVNALSTRLEVDIKRDGHEWSQYYERAVPGTL--KQGEATRK 58

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-------- 254
            GT I F  DP+IF     +D   + +  Q  A+L+  +    + ++   ++        
Sbjct: 59  TGTTIRFWADPEIFETT-QYDFETVARRLQEMAFLNKGLTINLTDERVEQDEVVDEVVSD 117

Query: 255 -----------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                                ++  F++PGGL  +++     +S I   +   + +  G 
Sbjct: 118 TAEAPKSAEEKAAESKAPHKVKQRTFHYPGGLVDFVKHINRTKSPIQQSVIDFEGKGTGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRA 354
               VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +    ++ 
Sbjct: 178 ---EVEIAMQWNGGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKEKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
            ++  DD+      ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP E
Sbjct: 235 PNLTGDDIREGLAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPSE 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDS
Sbjct: 295 AKTVVNKAVSSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    L
Sbjct: 355 AGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDITKL 414

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 415 RYHKIVL 421


>gi|295388348|gb|ADG03069.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  216 bits (550), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 149/404 (36%), Positives = 229/404 (56%), Gaps = 15/404 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+  F P  + F +   F    L K  +  ++L+  V      ++E        +++ F
Sbjct: 60  GTQTRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KQDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ ++Q    N++ I  +IF    E++     +VE A+ W +     I  + N I
Sbjct: 113 MYEGGIQAFVQHLNTNKTPIIEKIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+
Sbjct: 171 PQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE+A+ +    +LV+NP EA  +   +I+ +  R   RK R    
Sbjct: 231 SQTKDKLVSSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|19912093|dbj|BAB88358.1| DNA gyrase subunit B [Cytophaga sp. T-565]
          Length = 391

 Score =  216 bits (550), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 143/395 (36%), Positives = 210/395 (53%), Gaps = 9/395 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+S VNALSD L  TV R   I+ Q++ RG  L P+++  +  + RGT +TF
Sbjct: 1   VSGGLHGVGVSCVNALSDHLTATVFRDGVIWQQEYERGKALYPVKRIGETED-RGTEVTF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD  IF     +    L    +  ++L+  V    +  ++  EK      E FY   GL
Sbjct: 60  HPDNTIFTQTTEYSYETLANRMRELSFLNKGVTITITDKRQKDEKGD-YVGETFYSNEGL 118

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGG 328
           + +++    NR  +   +   + EK       VE A+ +     E    Y N I T EGG
Sbjct: 119 REFVKFLDGNREPLIQGVIAMEGEKNNIP---VEVAMMYNTSYTENLHSYVNNINTHEGG 175

Query: 329 THESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH SG R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F GQTKTK
Sbjct: 176 THLSGFRRGLTSTLKKYADASGMLDKLKFEIQGDDFREGLTAIVSVKVSEPQFEGQTKTK 235

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IR 445
           L + +    V  A+ +    YL ++P +A  +++ VI  ++ R    K RE+ ++   + 
Sbjct: 236 LGNREVSAAVSQAVSEMLTDYLEEHPDDAKTIVQKVILAAQARHAASKAREMVQRKNVMS 295

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKL+DCS+      E+F+VEGDSAGG+AK  R+R+ QA+LPLRGKILNV  A   
Sbjct: 296 GGGLPGKLSDCSEQDPEKCEIFLVEGDSAGGTAKMGRDRNFQAILPLRGKILNVEKAMQH 355

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           K+  N++I ++  ALG    ++   + L  EK+  
Sbjct: 356 KVFENEEIKNMYTALGVTIGTEEDSKALNLEKLRY 390


>gi|295388336|gb|ADG03063.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  216 bits (550), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 149/404 (36%), Positives = 229/404 (56%), Gaps = 15/404 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+I F P  + F +   F    L K  +  ++ +  V      ++E        +++ F
Sbjct: 60  GTQIRFWPSAETFSNT-EFHYDILAKRLRELSFSNSGVSIKLIDEREAD------KQDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ ++Q    N++ I  +IF    E++     +VE A+ W +     I  + N I
Sbjct: 113 MYEGGIQAFVQHLNTNKTPIIEKIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+
Sbjct: 171 PQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE+A+ +    +LV+NP EA  +   +I+ +  R   RK R    
Sbjct: 231 SQTKDKLVSSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|19912075|dbj|BAB88349.1| DNA gyrase subunit B [Cytophaga sp. MBIC04669]
          Length = 391

 Score =  216 bits (550), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 144/395 (36%), Positives = 212/395 (53%), Gaps = 9/395 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+S VNALSD L  TV R   I+ Q++ RG  L P+++  +  + RGT +TF
Sbjct: 1   VSGGLHGVGVSCVNALSDHLTATVFRDGVIWQQEYERGKALYPVKRIGETED-RGTEVTF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD  IF     +    L+   +  ++L+  V    +  ++  EK      E F+   GL
Sbjct: 60  HPDNTIFTQTIEYSYETLVNRMRELSFLNKGVTISITDKRQKDEKG-EYVGETFFSNEGL 118

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGG 328
           K +++    NR  +   +   + EK       VE A+ +     EI   Y N I T EGG
Sbjct: 119 KEFVKFLDGNRESLIQGVIAMEGEKNDIP---VEVAMIYNTSYTEIFHSYVNNINTHEGG 175

Query: 329 THESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH SG R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F GQTKTK
Sbjct: 176 THLSGFRRGLTSTLKKYADASGMLDKLKFEIQGDDFREGLTAIVSVKVSEPQFEGQTKTK 235

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IR 445
           L + +    V  A+ +    YL ++P +A  +++ VI  ++ R    K RE+ ++   + 
Sbjct: 236 LGNREVSAAVSQAVSEMLTDYLEEHPDDAKTIVQKVILAAQARHAASKAREMVQRKNVMS 295

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKL+DCS+      E+F+VEGDSAGG+AK  R+R+ QA+LPLRGKILNV  A   
Sbjct: 296 GGGLPGKLSDCSEQDPEKCEIFLVEGDSAGGTAKMGRDRNFQAILPLRGKILNVEKAMQH 355

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           K+  N++I ++  ALG    ++   + L  EK+  
Sbjct: 356 KVFENEEIKNMYTALGVTIGTEEDSKALNLEKLRY 390


>gi|19912071|dbj|BAB88347.1| DNA gyrase subunit B [Cytophaga sp. MBIC04682]
 gi|19912073|dbj|BAB88348.1| DNA gyrase subunit B [Cytophaga sp. MBIC04687]
          Length = 391

 Score =  216 bits (550), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 143/395 (36%), Positives = 211/395 (53%), Gaps = 9/395 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+S VNALSD L  TV R   I+ Q++ RG  L P+++  +  + RGT +TF
Sbjct: 1   VSGGLHGVGVSCVNALSDHLTATVFRDGVIWQQEYERGKALYPVKRIGETED-RGTEVTF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD  IF     +    L+   +  ++L+  V    +  ++  EK      E F+   GL
Sbjct: 60  HPDNTIFTQTIEYSYETLVNRMRELSFLNKGVTISITDKRQKDEKG-EYVGETFFSNEGL 118

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGG 328
           K +++    NR  +   +   + EK       VE A+ +     E    Y N I T EGG
Sbjct: 119 KEFVKFLDGNRESLIQGVIAMEGEKNDIP---VEVAMIYNTSYTENLHSYVNNINTHEGG 175

Query: 329 THESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH SG R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F GQTKTK
Sbjct: 176 THLSGFRRGLTSTLKKYADASGMLDKLKFEIQGDDFREGLTAIVSVKVSEPQFEGQTKTK 235

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IR 445
           L + +    V  A+ +    YL ++P +A  +++ VI  ++ R    K RE+ ++   + 
Sbjct: 236 LGNREVSAAVSQAVSEMLTDYLEEHPDDAKTIVQKVILAAQARHAASKAREMVQRKNVMS 295

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKL+DCS+      E+F+VEGDSAGG+AK  R+R+ QA+LPLRGKILNV  A   
Sbjct: 296 GGGLPGKLSDCSEQDPEKCEIFLVEGDSAGGTAKMGRDRNFQAILPLRGKILNVEKAMQH 355

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           K+  N++I ++  ALG    ++   + L  EK+  
Sbjct: 356 KVFENEEIKNMYTALGVTIGTEEDSKALNLEKLRY 390


>gi|262092492|gb|ACY25664.1| DNA gyrase B [Ruegeria sp. HD-28]
          Length = 392

 Score =  216 bits (550), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 139/401 (34%), Positives = 213/401 (53%), Gaps = 14/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+ L + V R       +F  G  +  L+   +  ++ G
Sbjct: 1   SNSYKVSGGLHGVGVSVVNALSNWLELRVWRNGKEHVARFEGGETVEHLKVVGECGDRTG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F      F +   +    L K  +  A+L+  V+     ++          + E +
Sbjct: 61  TEVRFLASTDTFSN-LEYSFETLEKRLRELAFLNSGVRIILVDER-----PAERLETELF 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++    ++S    E    K E+       VE A+ W +     +  + N I 
Sbjct: 115 YEGGVKEFVKYLDRSKSSAMPEPIYIKGERDDI---GVEIAMWWNDSYHESVLPFTNNIP 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR I  YA+ +   +        DD       +LSV + +P+F+ 
Sbjct: 172 QRDGGTHIAGFRGALTRTINNYAQSSGIAKREKVSFTGDDAREGLTCVLSVKVPDPKFSS 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTK KLVS + +  VE  + +    +  +NP EA  ++  +IE +  R   RK RE   R
Sbjct: 232 QTKDKLVSSEVRPAVEGMVNEKLAEWFEENPNEAKIIVGKIIEAALAREAARKARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           KTA+    L GKL DCS+     TE+F+VEGDSAGGSA+  R+R  QAVLPLRGKILNV 
Sbjct: 292 KTAMDVNYLAGKLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRLTQAVLPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +++ ++Q+I +LV ALG    R ++  E LRY K++I
Sbjct: 352 RARFDRMLSSQEIGNLVMALGTGIGRDEFNIEKLRYHKIVI 392


>gi|6729184|dbj|BAA89725.1| DNA gyrase subunit B [Micromonospora carbonacea]
          Length = 393

 Score =  216 bits (550), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 123/399 (30%), Positives = 206/399 (51%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS ++ V + +   ++ Q+++   P    +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTKMAVEIHKSGFVWRQQYANSKPSPLEK--GETTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + + F PD  +F     FD   + +  Q  A+L+  +      ++    + G   +  F 
Sbjct: 59  SAVAFWPDADVFETV-DFDFQTIYRRLQEMAFLNRGLTIHLLDERVPEGEEGKTREVTFC 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    +++ I   +     E++G    +VE A+ W E     + ++ NTI 
Sbjct: 118 YKGGIADFVRHLNASKTPIHKTVVEFGAEEEG---MSVEIAMQWNESYGESVYTFANTIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQ
Sbjct: 175 THEGGTHEEGFRAALTSVVNRYGADKKLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    +    +  +NP EA  ++ +           ++ ++   RK
Sbjct: 235 TKTKLGNTPVKSFVQRVCNEWLVDWFDRNPAEAKIIITKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY KV++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDMEKLRYHKVVL 393


>gi|6729186|dbj|BAA89726.1| DNA gyrase subunit B [Micromonospora chalcea]
 gi|188529728|gb|ACD62551.1| GyrB [Micromonospora chalcea]
 gi|188529785|gb|ACD62578.1| GyrB [Micromonospora chalcea]
 gi|188529801|gb|ACD62586.1| GyrB [Micromonospora chalcea]
 gi|188529807|gb|ACD62589.1| GyrB [Micromonospora chalcea]
          Length = 393

 Score =  216 bits (550), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 123/399 (30%), Positives = 206/399 (51%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V + +   ++ Q++    P    +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQRYDHSKPTPLEK--GEETDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PDP +F     FD   + +  Q  A+L+  +      ++   ++ G   +  F+
Sbjct: 59  SAVSFWPDPDVFETV-DFDFHTIYRRLQEMAFLTRGLTIHLLDERVPEDEDGKTREVTFH 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    ++S I   +     E+ G    +VE A+ W E     + ++ N I 
Sbjct: 118 YEGGIADFVRHLNASKSPIHKTVVEFGAEETG---MSVEIAMQWNESYGESVYTFANNIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISI-ISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +       +D+      I+SV + +P+F GQ
Sbjct: 175 THEGGTHEEGFRAALTSVVNRYGADKKLLKGDERLSGEDIREGLAAIISVKLTDPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    +    +  +NP EA  +++            ++ ++   RK
Sbjct: 235 TKTKLGNTPVKGFVQRVCNESLVDWFDRNPAEAKIIIQKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY K+++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDIEKLRYHKIVL 393


>gi|464905|sp|P34203|TOP2_ASFM2 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|58648|emb|CAA78614.1| DNA topoisomerase type II [African swine fever virus]
 gi|450712|emb|CAA50820.1| DNA topoisomerase type II [African swine fever virus]
          Length = 1191

 Score =  216 bits (550), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 106/641 (16%), Positives = 206/641 (32%), Gaps = 71/641 (11%)

Query: 72  KALHHLFSEVIDNAMDEVIAGYANL-----IEVSLDGNGFLTVVDNGRGIPVENHPKFP- 125
            AL  +F E+I NA D   A ++       I++S D  G     ++G GIP+  H +   
Sbjct: 52  PALLKIFDELIVNATDHERACHSKTKKVTYIKISFDK-GVFACENDGPGIPIAKHEQASL 110

Query: 126 ----NKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFS 181
               +    E+      AG   + +   I GG +GVG+ +    S    +T A     + 
Sbjct: 111 IAKRDVYVPEVASCHFLAGTNINKAKDCIKGGTNGVGLKLAMVHSQWAILTTADGAQKYV 170

Query: 182 QKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA-------RLLKMTQSK 234
           Q  ++ + +         R    TRI   P  +  G                +       
Sbjct: 171 QHINQRLDIIEPPTITPSREM-FTRIELMPVYQELGYAQPLSETEQADLSAWIYLRACQC 229

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           A   G+  T +  DK       +   + +             L +    +      K + 
Sbjct: 230 AAYVGKGTTIYYNDKPCNTGSVMALAKMY------------TLLSAPNSTIHTTAIKADA 277

Query: 295 KGTHRGTVEWAIAWCEENPEITSYCNTI-LTDEGGTHESGLRVALTRGIKKYAELTQNKR 353
           K      ++ A     +  +         +    G H + L+  +   + K  + T   +
Sbjct: 278 KPYSLHPLQVAAVVSPKFKKFEHVSIINGVNCVKGEHVTFLKKTINEMVVKKFQQTIKDK 337

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
                  D   +   ++   I   E+ GQ K +L   +    V          +L     
Sbjct: 338 NRKTTLRDSCSNIFVVIVGSIPGIEWTGQRKDELSIAEN---VFKTHYSIPSSFLTNMTR 394

Query: 414 EATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
               +L   I + +   +    +        +K +    LA    +        +  G S
Sbjct: 395 SIVDILLQSISKKDNHKQVDVDKYTRANAGGKKAQDCMLLAAEGDSALSLVRAGLTLGKS 454

Query: 474 -AGGSAKQARNRSNQAVLPLRGKILNVAS--------------AGSEKIRNNQQIMDLVQ 518
              G +          ++ L G I+N                   +E++ NN+ +  +VQ
Sbjct: 455 NPSGPS-----FDFCGMISLGGVIMNACKKVTNITTDSGETIMVRNEQLTNNKVLQGIVQ 509

Query: 519 ALGCRTRSQYREE----DLRYEKVIIMTDADVDGAH-IASLLLTFFYQEMYDLIEQKHLF 573
            LG      Y+ +     LRY  ++   D D+DG   I  LLL +F+     LI    + 
Sbjct: 510 VLGLDFNCHYKTQEERAKLRYGCIVACVDQDLDGCGKILGLLLAYFHLFWPQLIIHGFVK 569

Query: 574 LISPPLFRITQGTKS--VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
            +  PL R+ +  K+  V  + E+      ++          +  +KGL      ++K  
Sbjct: 570 RLLTPLIRVYEKGKTVPVEFYYEQEFDAWAKKQTSLANH--TVKYYKGLAAHDTHEVKSM 627

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
               +        ++         ++  +   G +++ R +
Sbjct: 628 FKHFDNMVYT-FTLDD------SAKELFHIYFGGESELRKR 661


>gi|186920317|gb|ACC95420.1| DNA gyrase subunit B [Micromonospora sp. 57]
          Length = 393

 Score =  216 bits (550), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 127/399 (31%), Positives = 209/399 (52%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V + +   ++ Q++    P    +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKSGFVWRQQYHNSKPDPLEK--GETTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++FRPDP +F     FD   + +  Q  A+L+  +      ++    + G P +  FY
Sbjct: 59  SAVSFRPDPDVFETT-DFDFQTIYRRLQEMAFLNRALSIHLLDERVAEGEEGKPREVTFY 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    +++ +   +     E++G    +VE A+ W E     + ++ NTI 
Sbjct: 118 YEGGIADFVRHLNASKNPMHKTVVEFAAEEEG---MSVEIAMQWNESYGESVYTFANTIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQ
Sbjct: 175 THEGGTHEEGFRAALTSVVNRYGADKKLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    D    +  +NP EA  +++            ++ ++   RK
Sbjct: 235 TKTKLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKTIIQKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY KV++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDMEKLRYHKVVL 393


>gi|188529791|gb|ACD62581.1| GyrB [Micromonospora chalcea]
          Length = 393

 Score =  216 bits (550), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 123/399 (30%), Positives = 206/399 (51%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V + +   ++ Q++    P    +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQRYDHSKPTPLGK--GEETDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PDP +F     FD   + +  Q  A+L+  +      ++   ++ G   +  F+
Sbjct: 59  SAVSFWPDPDVFETV-DFDFHTIYRRLQEMAFLTRGLTIHLLDERVPEDEDGKTREVTFH 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    ++S I   +     E+ G    +VE A+ W E     + ++ N I 
Sbjct: 118 YEGGIADFVRHLNASKSPIHKTVVEFGAEETG---MSVEIAMQWNESYGESVYTFANNIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISI-ISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +       +D+      I+SV + +P+F GQ
Sbjct: 175 THEGGTHEEGFRAALTSVVNRYGADKKLLKGDERLSGEDIREGLAAIISVKLTDPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    +    +  +NP EA  +++            ++ ++   RK
Sbjct: 235 TKTKLGNTPVKGFVQRVCNESLVDWFDRNPAEAKIIIQKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY K+++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDIEKLRYHKIVL 393


>gi|146325105|gb|ABQ22201.1| DNA gyrase subunit B [Vibrio alginolyticus]
          Length = 393

 Score =  216 bits (550), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 147/403 (36%), Positives = 228/403 (56%), Gaps = 15/403 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+I F P  + F +   F    L K  +  ++L+  V      ++E        + + F
Sbjct: 60  GTQIRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KHDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ ++     N++ I  +IF   +E++     +VE A+ W +     I  + N I
Sbjct: 113 MYEGGIQAFVDHLNTNKTPIIEKIFHFNSERED--GISVEVAMQWNDGFQENIFCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+
Sbjct: 171 PQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE+A+ +    +L++NP EA  +   +I+ +  R   RK R    
Sbjct: 231 SQTKDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIM 541
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIM
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIM 393


>gi|19912089|dbj|BAB88356.1| DNA gyrase subunit B [Cytophaga sp. MBIC04666]
          Length = 391

 Score =  216 bits (550), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 143/395 (36%), Positives = 210/395 (53%), Gaps = 9/395 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+S VNALSD L  TV R   I+ Q++ RG  L P+++  +  + RGT +TF
Sbjct: 1   VSGGLHGVGVSCVNALSDHLTATVFRDGVIWQQEYERGKALYPVKRIGETED-RGTEVTF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD  IF     +    L    +  ++L+  V    +  ++  EK      E F+   GL
Sbjct: 60  HPDNTIFTQTIEYSYETLANRMRELSFLNKGVTISITDKRQKDEKG-EYVGETFFSNEGL 118

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGG 328
           K +++    NR  +   +   + EK       VE A+ +     E    Y N I T EGG
Sbjct: 119 KEFVKFLDGNRESLIQGVIAMEGEKNDIP---VEVAMIYNTSYTENLHSYVNNINTHEGG 175

Query: 329 THESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH SG R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F GQTKTK
Sbjct: 176 THLSGFRRGLTSTLKKYADASGMLDKLKFEIQGDDFREGLTAIVSVKVSEPQFEGQTKTK 235

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IR 445
           L + +    V  A+ +    YL ++P +A  +++ VI  ++ R    K RE+ ++   + 
Sbjct: 236 LGNREVSAAVSQAVSEMLTDYLEEHPDDAKTIVQKVILAAQARHAASKAREMVQRKNVMS 295

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKL+DCS+      E+F+VEGDSAGG+AK  R+R+ QA+LPLRGKILNV  A   
Sbjct: 296 GGGLPGKLSDCSEQDPEKCEIFLVEGDSAGGTAKMGRDRNFQAILPLRGKILNVEKAMQH 355

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           K+  N++I ++  ALG    ++   + L  EK+  
Sbjct: 356 KVFENEEIKNMYTALGVTIGTEEDSKALNLEKLRY 390


>gi|130373027|emb|CAM57279.1| DNA gyrase subunit B [Yersinia sp. Y55]
          Length = 381

 Score =  216 bits (550), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 139/392 (35%), Positives = 217/392 (55%), Gaps = 16/392 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS++L + + R+  +  Q +  G+P +PL+   +  ++ GT + F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DQTGTTVRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F +   F    L K  +  ++L+  V       +   E       + F++ GG+
Sbjct: 60  WPSFQTFTNNIEFQYEILAKRLRELSFLNSGVSIKLKDKRNDRE-------DHFHYEGGI 112

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           + +++   +N++ I  ++F   T K       VE A+ W +     I  + N I   +GG
Sbjct: 113 RAFVEYLNKNKTPIHPKVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGG 169

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH  G R A+TR +  Y +      K  IS   DD     + ++SV + +P+F+ QTK K
Sbjct: 170 THLVGFRTAMTRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDK 229

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIR 445
           LVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+ 
Sbjct: 230 LVSSEVKTAVETLMNEKLVEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALD 289

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +
Sbjct: 290 LAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 349

Query: 506 KIRNNQQIMDLVQALGCRT-RSQYREEDLRYE 536
           K+ ++Q++  L+ ALGC   R +Y  + LRY 
Sbjct: 350 KMLSSQEVATLITALGCGIGRDEYNPDKLRYH 381


>gi|295388372|gb|ADG03081.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 150/404 (37%), Positives = 230/404 (56%), Gaps = 15/404 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+I F P  + F +   F    L K  +  ++L+  V      ++E        +++ F
Sbjct: 60  GTQIRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KQDYF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ ++Q    N++ I  +IF    E++     +VE A+ W +     I  + N I
Sbjct: 113 MYEGGIQAFVQHLNTNKTPIIEKIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+
Sbjct: 171 PQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE+A+ +    +LV+NP EA  +   +I+ +  R   RK R    
Sbjct: 231 SQTKDKLVSSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|148611267|gb|ABQ95822.1| DNA gyrase subunit B [Acidiphilium sp. DX3]
 gi|148611269|gb|ABQ95823.1| DNA gyrase subunit B [Acidiphilium sp. DX5]
 gi|148611273|gb|ABQ95825.1| DNA gyrase subunit B [Acidiphilium sp. DX1-4]
 gi|148611275|gb|ABQ95826.1| DNA gyrase subunit B [Acidiphilium sp. DX1-7]
 gi|148611279|gb|ABQ95828.1| DNA gyrase subunit B [Acidiphilium sp. DX1-9]
 gi|148611281|gb|ABQ95829.1| DNA gyrase subunit B [Acidiphilium sp. DX1-10]
 gi|148611283|gb|ABQ95830.1| DNA gyrase subunit B [Acidiphilium sp. DX1-11]
 gi|148611289|gb|ABQ95833.1| DNA gyrase subunit B [Acidiphilium sp. DBS1]
 gi|148611294|gb|ABQ95835.1| DNA gyrase subunit B [Acidiphilium sp. DY3]
 gi|148611296|gb|ABQ95836.1| DNA gyrase subunit B [Acidiphilium sp. DY4]
 gi|148611298|gb|ABQ95837.1| DNA gyrase subunit B [Acidiphilium sp. GF3]
 gi|148611300|gb|ABQ95838.1| DNA gyrase subunit B [Acidiphilium sp. LY1]
 gi|148611304|gb|ABQ95840.1| DNA gyrase subunit B [Acidiphilium sp. SM1]
 gi|148611310|gb|ABQ95842.1| DNA gyrase subunit B [Acidiphilium sp. SB8]
          Length = 400

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 139/407 (34%), Positives = 217/407 (53%), Gaps = 15/407 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D ++Y++SGGLHGVG +VVNALS+ + V + R       +F  G  ++PL       +  
Sbjct: 1   DQNSYKVSGGLHGVGAAVVNALSEWMEVRIWRDGKEHLIRFENGDTVAPLAVVGASEHGT 60

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TFRP    F     FD A   +  +  A+L+  +      ++  A      ++  F
Sbjct: 61  GTSVTFRPSAATFTR-TEFDFAIYERRLRELAFLNSGLTINLRDERHSAV-----QEAHF 114

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GGL  ++      ++ + S   T   +        VE+A+AW +     +  + N I
Sbjct: 115 RYEGGLVEFVSWLDRAKTQLFSPPVTA-FKDDAPGGIKVEFALAWNDTYHETMLCFTNNI 173

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
           +  +GGTH +G R ALTR + KYAE    K ++S+  +D+      +LSV + +P+F+ Q
Sbjct: 174 VQRDGGTHLAGFRSALTRVVSKYAESLGKKDSLSLSGEDMREGLTAVLSVKVPDPKFSSQ 233

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK KLVS + Q  V+ A+ D  +H+   +P E   + + V++ +  R   RK RE+ R+ 
Sbjct: 234 TKDKLVSSEVQPLVQAAVADALEHWFETHPKEGRLIAQKVMDAASAREAARKARELTRRK 293

Query: 443 A-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC +     +E+FIVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  
Sbjct: 294 GVLDISTLPGKLADCQERDPAKSEIFIVEGDSAGGSAKQGRDRKTQAILPLKGKILNVER 353

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQ------YREEDLRYEKVIIMT 542
           A  +++  + +I  L+ ALG            +    LRY +++IMT
Sbjct: 354 ARFDRMLGSAEIGTLITALGTGIGPAEPEQGGFDISKLRYHRIVIMT 400


>gi|188529803|gb|ACD62587.1| GyrB [Micromonospora chalcea]
          Length = 393

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 123/399 (30%), Positives = 207/399 (51%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V + +   ++ Q++    P    +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQRYDHSKPTPLEK--GEETDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PDP +F     FD   + +  Q  A+L+  +      ++   ++ G   +  F+
Sbjct: 59  SAVSFWPDPDVFETV-DFDFHTIYRRLQEMAFLTRGLTIHLLDERVPEDEDGKTREVTFH 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTIL 323
           + GG+  +++    ++S I   +     E+ G    +VE A+ W E   + + ++ N I 
Sbjct: 118 YEGGIADFVRHLNASKSPIHKTVVEFGAEETG---MSVEIAMQWNESYGKSVYTFANNIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISI-ISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +       +D+      I+SV + +P+F GQ
Sbjct: 175 THEGGTHEEGFRAALTSVVNRYGADKKLLKGDERLSGEDIREGLAAIISVKLTDPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    +    +  +NP EA  +++            ++ ++   RK
Sbjct: 235 TKTKLGNTPVKGFVQRVCNESLVDWFDRNPAEAKIIIQKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY K+++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDIEKLRYHKIVL 393


>gi|110612639|gb|ABG78282.1| GyrB [uncultured bacterium]
          Length = 406

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 149/416 (35%), Positives = 216/416 (51%), Gaps = 13/416 (3%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FDN+TY++SGGLHGVG+SVVNALS+ L + + ++   F Q + +GIP +PL         
Sbjct: 1   FDNNTYKVSGGLHGVGVSVVNALSETLFLDIDQKGNHFRQVYHKGIPEAPLAITGTSETT 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
             T I F PD  I      F    L    +   YL+  +            +     +E 
Sbjct: 61  G-TSIRFYPDLTIMETD-AFSFDVLAHRFRELGYLNPALTII-------LREEETLREEV 111

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
           F+  GG++++L    EN+  I   +   K+   G+    + +      +   + SY N I
Sbjct: 112 FHDEGGIRSFLLFVNENKRTIHDPLTFRKSFDNGST-FEISFQYQDTTDAETLLSYVNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T EGGTH  G R ALTR + ++ +     +   +  +D+      I+S+ I  P+F GQ
Sbjct: 171 PTREGGTHVRGFRAALTRVVNRFIKDKNLNKGEEVRGEDIREGLSAIVSIKIPNPQFEGQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TK KL S      +E  L +  +    +    A  + +  I  ++ R   RK RE   RK
Sbjct: 231 TKAKLGSSWVSGAMETFLAEALEDAFEKQGTVARAIADKAILSAQAREAARKARELTKRK 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC +N    +EL+IVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  
Sbjct: 291 NVLEGSNLPGKLADCQENDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKGKILNVEK 350

Query: 502 AG-SEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLL 555
           +   EK   + ++  L+ A+GC   ++      LRY K+IIMTDADVDG+HI +LL
Sbjct: 351 SKGVEKFITHDEVRALITAVGCGLGAEEFSLKNLRYHKIIIMTDADVDGSHIRTLL 406


>gi|6729233|dbj|BAA89738.1| DNA gyrase subunit B [Mycobacterium simiae]
          Length = 421

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 139/427 (32%), Positives = 214/427 (50%), Gaps = 35/427 (8%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
            +NS Y +SGGLHGVG+SVVNALS  L V V R    + Q + R +P +   K+ +   K
Sbjct: 1   GENSGYTVSGGLHGVGVSVVNALSTRLEVNVKRDGYEWFQYYDRAVPGTL--KQGEATKK 58

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE--------- 253
            GT I F  DP+IF     +D   + +  Q  A+L+  +    + ++   +         
Sbjct: 59  TGTTIRFWADPEIFETT-QYDFETVARRLQEMAFLNKGLTINLTDERVEQDEVVDEVVSD 117

Query: 254 ----------------KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                           K    +   F++PGGL  +++     ++ I   +     +  G 
Sbjct: 118 TAEAPKSAEEQAAESAKPHKVKHRTFHYPGGLVDFVKHINRTKNPIQQSVIDFDGKGTGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRA 354
               VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +     + 
Sbjct: 178 ---EVEIAMQWNGGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
            ++  DD+      ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP E
Sbjct: 235 PNLTGDDIREGLAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPSE 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDS
Sbjct: 295 AKTVVNKAVSSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    L
Sbjct: 355 AGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDITKL 414

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 415 RYHKIVL 421


>gi|326379148|gb|ADZ57487.1| DNA topoisomerase IV subunit B [Flavobacterium psychrophilum]
          Length = 455

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 112/491 (22%), Positives = 190/491 (38%), Gaps = 56/491 (11%)

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
                +       +    ++KM ++  YL+  +   ++ +K             F+   G
Sbjct: 2   SFIADEAIFKNYKYRNEYIIKMLKNYCYLNTGLTIIYNGEK-------------FFSNNG 48

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGG 328
           LK  L+  +    ++   I              +    +  + + E  S+ N   T +GG
Sbjct: 49  LKDLLEENIAEEDMVYPIIHLLG------DDIEIAITHSKTQYSEEYYSFVNGQNTTQGG 102

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           TH    R ++ + IK++             + D+  S V  + V + EP F  QTKTKL 
Sbjct: 103 THLGAFRESIVKTIKEFYN-------KPFEASDIRKSIVSAIVVRVEEPVFESQTKTKLG 155

Query: 389 SLDA-------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           S D        +  V + ++   D++L +NP  A  LL  +++   ER      R++ + 
Sbjct: 156 STDMGPDLPSVRTFVNDFIKTKLDNFLHKNPETADLLLRKILQAERERKELSGIRKLAKD 215

Query: 442 TAIRKLRLPGKLADCSQNIAH-------GTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
            A +      KL DC  ++          + LFI EGDS                     
Sbjct: 216 RAKKSNLHNKKLRDCRVHLTDAKNARSLESTLFITEGDSXXXXXXXXXXXX----XXXXX 271

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554
                                           +   EDLRY  ++I TDADVDG HI  L
Sbjct: 272 XXXXXXXXXXXXXXXXXXXXXXXXXXXAALNIEESMEDLRYNNIVIATDADVDGMHIRLL 331

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           L+TFF Q   ++I++ HL+++  PLFR+    +++Y + E+ K+  +E+     K K EI
Sbjct: 332 LITFFLQFFPEMIKEGHLYILQTPLFRVRNKKETIYCYSEQEKRDAIEKL----KPKPEI 387

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
           +RFKGLGE+   + K          L  V ++K        +  +   MG    +R  FI
Sbjct: 388 TRFKGLGEISPDEFKNFIG--ETIRLDPVMLDKST----SIEKLLEFYMGKNTPDRQTFI 441

Query: 675 QERASFIDDVG 685
                   ++ 
Sbjct: 442 INNLKV--ELD 450


>gi|148611285|gb|ABQ95831.1| DNA gyrase subunit B [Acidiphilium sp. DX1-12]
          Length = 400

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 138/407 (33%), Positives = 216/407 (53%), Gaps = 15/407 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D ++Y++SGGLHGVG +VVNALS+ + V + R       +F  G  ++PL       +  
Sbjct: 1   DQNSYKVSGGLHGVGAAVVNALSEWMEVRIWRDGKEHLIRFENGDTVAPLAVVGASEHGT 60

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TFRP    F     FD A   +  +  A+L+  +      ++  A      ++  F
Sbjct: 61  GTSVTFRPSAATFTR-TEFDFAIYERRLRELAFLNSGLTINLRDERHSAV-----QEAHF 114

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GGL  ++      ++ + S   T   +        VE+A+AW +     +  + N I
Sbjct: 115 RYEGGLVEFVSWLDRAKTQLFSPPVTA-FKDDAPGGIKVEFALAWNDTYHETMLCFTNNI 173

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
           +  + GTH +G R ALTR + KYAE    K ++S+  +D+      +LSV + +P+F+ Q
Sbjct: 174 VQRDSGTHLAGFRSALTRVVSKYAESLGKKDSLSLSGEDMREGLTAVLSVKVPDPKFSSQ 233

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK KLVS + Q  V+ A+ D  +H+   +P E   + + V++ +  R   RK RE+ R+ 
Sbjct: 234 TKDKLVSSEVQPLVQAAVADALEHWFETHPKEGRLIAQKVMDAASAREAARKARELTRRK 293

Query: 443 A-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC +     +E+FIVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  
Sbjct: 294 GVLDISTLPGKLADCQERDPAKSEIFIVEGDSAGGSAKQGRDRKTQAILPLKGKILNVER 353

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQ------YREEDLRYEKVIIMT 542
           A  +++  + +I  L+ ALG            +    LRY +++IMT
Sbjct: 354 ARFDRMLGSAEIGTLITALGTGIGPAEPEQGGFDISKLRYHRIVIMT 400


>gi|38224384|gb|AAR14134.1| DNA gyrase B subunit [Fusobacterium necrophorum subsp. necrophorum]
          Length = 400

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 147/411 (35%), Positives = 214/411 (52%), Gaps = 17/411 (4%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRN 201
           +N  Y++SGGLHGVGISVVNALS+   V V R+  ++ QK+ RG P+  ++     +V  
Sbjct: 1   ENDNYKVSGGLHGVGISVVNALSEWTKVKVKREGNVYYQKYLRGKPVEDVKIISTLEVGE 60

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             GT +TF+PD +IF     F+   L    +  AYL+  ++      +       I +KE
Sbjct: 61  TTGTIVTFKPDIEIFETVI-FEYEVLQHRLKELAYLNRGLEINLLDCR-----NEIGKKE 114

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
            F F GG+  +L+      + +S +I     + +GT RG  + A  +           N 
Sbjct: 115 SFQFEGGISDFLKKSSRKSNSLSKQIHL---KDRGTSRG--DIAFTYTPVKGSYLFLVNN 169

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNK--RAISIISDDLMISAVGILSVFIREPEF 379
           I T EGG+H +GLR  LT+ I    +       +   I           I+SV + +P+F
Sbjct: 170 INTTEGGSHVTGLRTCLTKVINDIGKSQGIFEGKRWKITRRRHSGRNWAIISVKVPQPQF 229

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN 439
            GQTKTKL + +    V   L      +L  NP +   ++E ++   + R   ++ RE  
Sbjct: 230 EGQTKTKLGNSEVNGIVNTVLSTDLKIFLEDNPNDTKLIIEKILSSKKAREAAQRAREAV 289

Query: 440 RKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +    LPGKLADCS       E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILN
Sbjct: 290 LRKSVLEVGSLPGKLADCSSKKPEECEIFLVEGDSAGGSAKQGRDRYFQAILPLKGKILN 349

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDG 548
           V  AG  K   + +I  +V A G     +  + E LRY K+I+MTDADVDG
Sbjct: 350 VEKAGLHKALESDEIRAMVTAFGTNIGEESFDLEKLRYGKIILMTDADVDG 400


>gi|295388350|gb|ADG03070.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 150/404 (37%), Positives = 229/404 (56%), Gaps = 15/404 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y +SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K 
Sbjct: 1   DDNSYRVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+I F P  + F +   F    L K  +  ++L+  V      ++E        +++ F
Sbjct: 60  GTQIRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KQDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ ++Q    N++ I  +IF    E++     +VE A+ W +     I  + N I
Sbjct: 113 MYEGGIQAFVQHLNTNKTPIIEKIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+
Sbjct: 171 PQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE+A+ +    +LV+NP EA  +   +I+ +  R   RK R    
Sbjct: 231 SQTKDKLVSSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|19909731|dbj|BAB87061.1| DNA gyrase subunit B [Phyllobacterium myrsinacearum]
          Length = 389

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 147/398 (36%), Positives = 220/398 (55%), Gaps = 13/398 (3%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS  L + + RQ  I    F+ G+  +PL +      + GT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSVWLRLKIRRQGKIHEMSFTHGVADAPLREIGDSNGETGTE 60

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           ++F P  + F     FD   L    +  A+L+  V+   +  +        P + E ++ 
Sbjct: 61  VSFLPSTETFT-MVEFDFKTLEHRLRELAFLNSGVRILLADRRHAD-----PVELELFYE 114

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTD 325
           GGL  Y++     +  + SE    + E+  T   TVE A+ W +   E    + N I   
Sbjct: 115 GGLTAYVKYLDRTKKELVSEPIYIRGERDDT---TVEVAMWWNDSYHENVLCFTNNIPQR 171

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R ALTR +  YAE T    K  +S+  DD       +LSV + +P+F+ QT
Sbjct: 172 DGGTHLAGFRGALTRQMTGYAENTGQAKKAKVSLTGDDCREGLTAVLSVKVPDPKFSSQT 231

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443
           K KLVS + +  VE+ + +    +L ++P E   L+E VI+ +  R   RK R++ RK +
Sbjct: 232 KDKLVSSEVRAVVESLVNEALSSWLEEHPAEGKVLVEKVIQAASAREAARKARDITRKNS 291

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +     +E+FIVEGDSAGGSAK  R+R NQA+LPLRGKILNV    
Sbjct: 292 LSISSLPGKLADCQERDPAKSEIFIVEGDSAGGSAKGGRSRQNQAILPLRGKILNVERVK 351

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            +++ ++ QI  L+ ALG    + ++  + LRY K+II
Sbjct: 352 LDRMLSSDQIGTLILALGTSIGKDEFNPDKLRYHKIII 389


>gi|295388364|gb|ADG03077.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 150/404 (37%), Positives = 230/404 (56%), Gaps = 15/404 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+I F P  + F +   F    L K  +  ++L+  V      ++E        +++ F
Sbjct: 60  GTQIRFWPSAETFSNT-EFHYDILTKRLRELSFLNSGVSIKLIDEREAD------KQDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ ++Q    N++ I  +IF    E++     +VE A+ W +     I  + N I
Sbjct: 113 MYEGGIQAFVQHLNTNKTPIIEKIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+
Sbjct: 171 PQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE+A+ +    +LV+NP EA  +   +I+ +  R   RK R    
Sbjct: 231 SQTKDKLVSSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|6729217|dbj|BAA89730.1| DNA gyrase subunit B [Micromonospora halophytica]
          Length = 393

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 122/399 (30%), Positives = 209/399 (52%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V + +  +++ Q++ +  P    +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKSGSVWRQQYHQSKPTPLEK--GEATDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PDP +F     FD   + +  Q  A+L+  +      ++    + G   +  F+
Sbjct: 59  SAVSFWPDPDVFETV-DFDFQTIYRRLQEMAFLTRGLTIHLLDERVPEGEEGKLREVTFH 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    +++ +   +     E++G    ++E A+ W E     + ++ N I 
Sbjct: 118 YEGGIADFVRHLNASKTPMHKTVVEFGAEEEG---MSLEIAMQWNESYGESVYTFANNIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQ
Sbjct: 175 THEGGTHEEGFRAALTSVVNRYGAEKKLLKGDEKLSGEDIREGLAAIISVKLTNPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    D    +L +NP EA  ++ +           ++ ++   RK
Sbjct: 235 TKTKLGNTPVKSFVQRVCNDRLVDWLDRNPAEAKIIISKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY K+++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDIEKLRYHKIVL 393


>gi|22762003|dbj|BAC11788.1| gyrase B [Staphylococcus aureus]
 gi|22762005|dbj|BAC11789.1| gyrase B [Staphylococcus aureus]
 gi|22762007|dbj|BAC11790.1| gyrase B [Staphylococcus aureus]
 gi|22762009|dbj|BAC11791.1| gyrase B [Staphylococcus aureus]
 gi|22762011|dbj|BAC11792.1| gyrase B [Staphylococcus aureus]
 gi|22762013|dbj|BAC11793.1| gyrase B [Staphylococcus aureus]
 gi|22762015|dbj|BAC11794.1| gyrase B [Staphylococcus aureus]
 gi|22762017|dbj|BAC11795.1| gyrase B [Staphylococcus aureus]
 gi|22762019|dbj|BAC11796.1| gyrase B [Staphylococcus aureus]
 gi|22762021|dbj|BAC11797.1| gyrase B [Staphylococcus aureus]
 gi|22762023|dbj|BAC11798.1| gyrase B [Staphylococcus aureus]
 gi|22762025|dbj|BAC11799.1| gyrase B [Staphylococcus aureus]
          Length = 392

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 133/400 (33%), Positives = 210/400 (52%), Gaps = 12/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS +L V V R  TI+ Q + +G+P   L++     +K G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I F+ D +IF +   ++   L +  +  A+L+  ++     +++         ++ ++
Sbjct: 60  TVIRFKADGEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEE----NVREDSYH 115

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K+Y++   EN+  I  E       K       VE AI +       + +Y N I 
Sbjct: 116 YEGGIKSYVELLNENKEPIHDEPIYIHQSKDDI---EVEIAIQYNSGYATNLLTYANNIH 172

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G + ALTR +  Y   ++  +        +D       I+S+   +P+F G
Sbjct: 173 TYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEG 232

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNR 440
           QTKTKL + + ++ V+    + F+ +L +NP  A  ++E  ++        ++ +    R
Sbjct: 233 QTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRR 292

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS       E+F+VEGDSAGGS K  R+   QA+LPLRGKILNV 
Sbjct: 293 KSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVE 352

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  ++I NN +I  ++ A G      +     RY K++I
Sbjct: 353 KARLDRILNNNEIRQMITAFGTGIGGDFDLAKARYHKIVI 392


>gi|38224465|gb|AAR14140.1| DNA gyrase B subunit [Fusobacterium varium]
          Length = 398

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 143/407 (35%), Positives = 211/407 (51%), Gaps = 14/407 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           +N  Y++SGGLHGVG+SVVNALS    VTV     I+ QK++RG+P   +++        
Sbjct: 1   ENDNYKVSGGLHGVGVSVVNALSLWTDVTVKTDGKIWYQKYNRGVPEEDVKEIGVTTEH- 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F+ D +IF     +D   L    +  AYL+  ++   S  ++   K      EEF
Sbjct: 60  GTTVRFKADHEIFETLI-YDYNTLKNRLKELAYLNKGLEIHLSDSRKEPYKK-----EEF 113

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTI 322
            F GG+  +L+   E    +  E      E        V+ A  +   ++  I S+ N I
Sbjct: 114 KFEGGIVDFLKEITEETEKLIPEPIYMTGEVDNV---AVDIAFLYTVNQSEIIYSFVNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
            T EG +H SG R ALT  +    +      ++   +  +D+      I+SV + +P+F 
Sbjct: 171 NTHEGRSHVSGFRTALTGVLNDVGKAQGYLKEKDGKLQGNDIREGVTAIVSVKVPQPQFE 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +    V   +       L  NP +   ++E ++   + R   +K RE+  
Sbjct: 231 GQTKTKLGNSEVTGIVSTLVGTNLKIVLEDNPNDTKIIIEKILNSKKAREAAQKARELVL 290

Query: 441 KTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           + + +    LPGKLADCS       E++IVEGDSAGGSAKQ R+RS+QA+LPLRGKILNV
Sbjct: 291 RKSVLEVGSLPGKLADCSSKNPDECEIYIVEGDSAGGSAKQGRDRSHQAILPLRGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADV 546
             AG  K   N ++  ++ A G      +  E LRY K+I+MTDADV
Sbjct: 351 EKAGLHKSLENNEVRAMITAFGTSIGDSFNIEKLRYGKIILMTDADV 397


>gi|6729271|dbj|BAA89757.1| DNA gyrase subunit B [Mycobacterium tuberculosis]
          Length = 419

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 136/425 (32%), Positives = 213/425 (50%), Gaps = 35/425 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y ISGGLHGVG+SVVNALS  L V + R    +SQ + +  PL    K+     K G
Sbjct: 1   SDAYAISGGLHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLGL--KQGAPTKKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY--------- 255
           + + F  DP +F     +D   + +  Q  A+L+  +    + ++   ++          
Sbjct: 59  STVRFWADPAVFETT-EYDFETVARRLQEMAFLNKGLTINLTDERVPQDEVVDEVVSDVA 117

Query: 256 ----------------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
                              +   F++PGGL  +++     ++ I S I     +  G   
Sbjct: 118 EAPKSASERAAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGH-- 175

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
             VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +    +  +
Sbjct: 176 -EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPN 234

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           +  DD+      ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A 
Sbjct: 235 LTGDDIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAK 294

Query: 417 KLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAG
Sbjct: 295 VVVNKAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAG 354

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           GSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY
Sbjct: 355 GSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRY 414

Query: 536 EKVII 540
            K+++
Sbjct: 415 HKIVL 419


>gi|83016380|dbj|BAE53406.1| DNA gyrase B [Laceyella sacchari]
          Length = 390

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 145/400 (36%), Positives = 210/400 (52%), Gaps = 14/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y+ SGGLHGVG+SVVNALS+ L V V R+  I  Q + RG+P   L+   +      
Sbjct: 1   GGGYKFSGGLHGVGVSVVNALSEWLQVEVKREGKIHRQSYRRGVPEHDLQIVGETEETGT 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
             +TF+PDP IF +   +D   L    +  A+L+  +K      +         +   F 
Sbjct: 61  -TVTFKPDPTIFTETTVYDFETLQSRLRELAFLNRGIKIVLEDKRG------EGKHVVFQ 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+++Y++    NR ++         EK+      VE A+ + +       SY N I 
Sbjct: 114 YEGGIQSYVEHLNRNREVLHEPPIYISGEKESIQ---VEIAMQYNDSFSSNIYSYANNIH 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G + ALTR I  YA      +    ++  DD+      I+SV I +P+F G
Sbjct: 171 THEGGTHEAGFKSALTRVINDYARRNNLLKDNDSNLTGDDVREGLTAIISVKIADPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNR 440
           QTKTKL + +A+   E    + F  YL +NP  A K++   V+        R+ +    R
Sbjct: 231 QTKTKLGNSEARSATEQLFTEHFQTYLEENPAVAKKVIGKAVMAARAREAARKARELTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC+   A  +ELFIVEGDSAGG+AKQ R+R  QA+LPLRGK+LNV 
Sbjct: 291 KNALEVSSLPGKLADCTSRNAAESELFIVEGDSAGGTAKQGRDRMFQAILPLRGKVLNVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +K  +N++I  ++ ALG      +  E  RY  ++I
Sbjct: 351 KARLDKALSNEEIRTIITALGTGIGDDFNIEKARYHNIVI 390


>gi|295979501|dbj|BAJ07423.1| DNA gyrase subunit B [Planktothrix agardhii]
          Length = 352

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 112/339 (33%), Positives = 172/339 (50%), Gaps = 4/339 (1%)

Query: 91  AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
           AGY   IE+  + NG +TV D+GRGIPV+ H K   KS LE +LT LHAGGKF    Y++
Sbjct: 1   AGYCTHIEIDFNANGSVTVTDDGRGIPVDTHSK-TGKSALETVLTVLHAGGKFGGGGYKV 59

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS+ L VTV R    +SQ+F RG P + L  K     + GT ++F 
Sbjct: 60  SGGLHGVGVSVVNALSEWLEVTVFRDRKEYSQRFERGTPATELTSKPIKEARTGTSVSFL 119

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PD  IF     FD   +    +  AYL+  VK   +  +           E + + GG++
Sbjct: 120 PDTSIFTTGIEFDCDTIASRLRELAYLNAGVKITLTDSRLELLNRENSRIETYCYEGGIR 179

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330
            Y+     ++  +  +I     E+    +  V         +  +  + N I T +GGTH
Sbjct: 180 EYIAYMNNDKQPLHEDIIYTCGERSNV-QIEVALQWCTDAYSDTVLGFANNIRTIDGGTH 238

Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             GL+  LTR +   A      +    ++  +++      ++S  + +PEF GQTKT+L 
Sbjct: 239 LEGLKTVLTRTLNAIARKRNKLKEGEANLGGENIREGLTAVISAKVPDPEFEGQTKTRLG 298

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
           + + +  V++ + +    YL  NP  A  ++E  I+  +
Sbjct: 299 NPEVRGIVDSLVGEALTEYLEFNPGIADAIIEKAIQAFK 337


>gi|188529777|gb|ACD62574.1| GyrB [Micromonospora sp. 81]
          Length = 393

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 125/399 (31%), Positives = 207/399 (51%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V + +   ++ Q++    P S  +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKSGFVWRQQYHNSKPDSLDK--GETTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PDP +F     FD   + +  Q  A+L+  +      ++    + G P +  FY
Sbjct: 59  SAVSFWPDPDVFETT-DFDFQTIYRRLQEMAFLNRALSIHLLDERVAEGEEGKPREVTFY 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    +++ +   +     E++G    +VE A+ W E     + ++ NTI 
Sbjct: 118 YEGGIADFVRHLNASKNPMHKTVVEFAAEEEG---MSVEIAMQWNESYGESVYTFANTIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQ
Sbjct: 175 THEGGTHEEGFRAALTSVVNRYGADKKLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+         +  +NP EA  +++            ++ ++   RK
Sbjct: 235 TKTKLGNTPVKSFVQRVCNVRLVDWFDRNPAEAKTIIQKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    + GKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMLGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY KV++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDMEKLRYHKVVL 393


>gi|308152585|dbj|BAJ22271.1| DNA gyrase subunit B [Mycobacterium sp.]
          Length = 419

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 134/424 (31%), Positives = 210/424 (49%), Gaps = 35/424 (8%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y++SGGLHGVG+SVVNALS  L   + +    + Q + + +P +  +   +   K GT
Sbjct: 2   GAYQVSGGLHGVGVSVVNALSTRLEADIHKDGFEWHQTYDKSVPGTLRK--GEPSKKNGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY---------- 255
            I F  DP IF     +D   + +  Q  A+L+  +    + ++  A             
Sbjct: 60  TIRFWADPDIFETTV-YDFETIARRLQEMAFLNKGLTIELTDERVAAAAVVDEVVSDHAE 118

Query: 256 ---------------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                             +   F++P GL  +++     +S I   I     +  G    
Sbjct: 119 APKSAEEQAAEAAAPQKVKHRVFHYPDGLVDFVKHINRTKSAIQQSIIDFGGKGDGH--- 175

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISI 357
            VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++  ++
Sbjct: 176 EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYARDKKLLKEKEANL 235

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      ++SV +R+P+F GQTKTKL + + +  V+    +   H+   NP EA  
Sbjct: 236 TGDDIREGLAAVVSVKVRQPQFEGQTKTKLGNTEVKSFVQKICNEQLTHWFEANPAEAKT 295

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGG
Sbjct: 296 VVNKAVSSAQARVAARKARELVRRKSATDIGGLPGKLADCRSTDPTKSELYVVEGDSAGG 355

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY 
Sbjct: 356 SAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNNEVQAIITALGTGIHDEFDISKLRYH 415

Query: 537 KVII 540
           K+++
Sbjct: 416 KIVL 419


>gi|27544668|dbj|BAC55029.1| DNA gyrase B subunit [Fluoribacter bozemanae]
          Length = 389

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 143/401 (35%), Positives = 226/401 (56%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+ELH+TV R   I  Q +  G+P +P+ +        G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELHLTVRRHGKIHEQHYRNGVPDAPMAETGDAS-TTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+I F+P  + F +   F    L K  +  +YL+  V      ++          ++ F+
Sbjct: 60  TQIWFKPSAETFSNI-EFHYDILAKRLRELSYLNSGVCIHLFDERSQ-------RQDTFH 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+  +++   +N++ I   +F+   EK       VE ++ W +   E    + N I 
Sbjct: 112 YEGGITAFVEHLNKNKNTIMPTVFSMTAEKDNI---VVELSMQWNDSYQETLYCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  Y E      K  +S   DD       +LSV + +P+F+ 
Sbjct: 169 QRDGGTHMAGFRAALTRTLNNYIESEGYAKKAKVSPTGDDAREGLTAVLSVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE+++ + F+ +L++NP  A  ++  +I+ +  R   R+ R    R
Sbjct: 229 QTKDKLVSSEVKSVVESSVAEKFNDFLLENPSSAKAIVGKIIDAARAREAARRAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+  +Q++  L+ ALGC     +Y  + +RY ++II
Sbjct: 349 KARFDKMLASQEVATLITALGCGIGPDEYDPDKVRYHRIII 389


>gi|4587045|dbj|BAA76598.1| DNA gyrase subunit B [Mycobacterium bovis]
 gi|6729235|dbj|BAA89739.1| DNA gyrase subunit B [Mycobacterium bovis]
 gi|6729247|dbj|BAA89745.1| DNA gyrase subunit B [Mycobacterium africanum]
 gi|6729249|dbj|BAA89746.1| DNA gyrase subunit B [Mycobacterium bovis]
 gi|6729259|dbj|BAA89751.1| DNA gyrase subunit B [Mycobacterium microti]
          Length = 419

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 135/425 (31%), Positives = 213/425 (50%), Gaps = 35/425 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y ISGGLHGVG+SVVNALS  L V + R    +SQ + +  PL    K+     K G
Sbjct: 1   SDAYAISGGLHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLGL--KQGAPTKKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY--------- 255
           + + F  DP +F     +D   + +  Q  A+L+  +    + ++   ++          
Sbjct: 59  STVRFWADPAVFETT-EYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVA 117

Query: 256 ----------------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
                              +   F++PGGL  +++     ++ I S I     +  G   
Sbjct: 118 EAPKSASERAAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGH-- 175

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
             VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +    +  +
Sbjct: 176 -EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPN 234

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           +  DD+      ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP ++ 
Sbjct: 235 LTGDDIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDSK 294

Query: 417 KLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAG
Sbjct: 295 VVVNKAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAG 354

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           GSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY
Sbjct: 355 GSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRY 414

Query: 536 EKVII 540
            K+++
Sbjct: 415 HKIVL 419


>gi|302746266|gb|ADL62723.1| GyrB [Morganella morganii subsp. sibonii]
          Length = 388

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 138/398 (34%), Positives = 213/398 (53%), Gaps = 16/398 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVN LS++L + + R   +  Q +  G P   L    +  +K GTR
Sbjct: 2   SYKVSGGLHGVGVSVVNPLSEKLELVIRRDGKVHEQIYRHGEPQDRLTIVGET-DKTGTR 60

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F P    F  +  F    L K  +  ++L+  V       ++  E       + F++ 
Sbjct: 61  VRFWPSMDTFKGETEFQYDILAKRLRELSFLNSGVSIRLVDKRDGKE-------DHFHYE 113

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+K +++     ++ I + +F   TEK       VE ++ W +     +  + N I   
Sbjct: 114 GGIKAFVEYLSRAKTSIHNNVFYFSTEKDDI---GVEVSMQWNDSFQENVYCFTNNIPQR 170

Query: 326 EGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GG H +G R A+TR +  Y E      K  +S   DD     V ++SV + +P+F+ QT
Sbjct: 171 DGGAHLAGFRAAMTRTLNSYIEKEGLNKKSKVSTTGDDAREGLVAVISVKVPDPKFSSQT 230

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKT 442
           K KLVS + +  VE  + +    YL +NP +   ++  +I+ +  R   R+ R    RK 
Sbjct: 231 KDKLVSSEVKTAVETLMNEKLSEYLDENPNDTKIIVGKIIDAARAREAARRAREMTRRKG 290

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 291 ALDLAGLPGKLADCQERDPAFSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 350

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
             +K+  +Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 351 RFDKMLASQEVATLITALGCGIGRDEYNPDKLRYHSII 388


>gi|18147167|dbj|BAB83064.1| DNA gyrase subunit B [Alcanivorax sp. PR-1]
          Length = 393

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 144/405 (35%), Positives = 221/405 (54%), Gaps = 17/405 (4%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD+++Y++SGGLHGVG+SVVNALS+ L +T+ R   +  Q +  G+P  PLE        
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSETLKLTIRRHGKVHEQVYHDGVPEKPLEVVG-TTES 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT I FRP    F +   F    L K  +  ++L+  V+     ++   E       + 
Sbjct: 60  SGTAIRFRPSSGTFNNI-QFHYDILAKRLRELSFLNSGVRIHLVDERSGDE-------DV 111

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           F + GGL  ++    +N++ ++         + G    +VE A+ W +     I  Y N 
Sbjct: 112 FEYEGGLSAFVTYLNQNKNSLNQVFHFQVDREDGI---SVEVAMQWNDSYQENIFCYTNN 168

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R ALTR +  Y E      +   +   DD       I+SV + +P+F
Sbjct: 169 IPQRDGGTHLAGFRAALTRTLNNYMEKEGFLKREKANPSGDDAREGLTAIISVKVPDPKF 228

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REV 438
           + QTK KLVS + +  VE  + + F  +L+++P+E+  +++ +I+ +  R   RK     
Sbjct: 229 SSQTKDKLVSSEVKSAVEQTMTERFQDFLLEHPVESKNIVQKIIDAARARDAARKAREMT 288

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ R+R  QA+LPL+GKILN
Sbjct: 289 RRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRDRKYQAILPLKGKILN 348

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMT 542
           V  A  +K+ ++Q++  L+ ALGC       + + LRY ++IIMT
Sbjct: 349 VEKARFDKMLSSQEVATLITALGCGIGRDEYDADKLRYHRIIIMT 393


>gi|308153122|dbj|BAJ22150.1| DNA gyrase subunit B [Micromonospora citrea]
          Length = 389

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 125/395 (31%), Positives = 205/395 (51%), Gaps = 9/395 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V + +   ++ Q++    P    +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVVIHKDGFVWRQQYQNSKPTPLEK--GEPTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PDP +F     FD   + +  Q  A+L+  V      ++   E+ G P +  F 
Sbjct: 59  SAVSFWPDPDVFETV-DFDFQTIYRRLQEMAFLNRGVTIHLLDERVPEEEEGKPREVTFC 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    +++ I   +    +E++G    +VE A+ W E     + ++ NTI 
Sbjct: 118 YKGGIADFVRHLNASKNPIHKTVVEFGSEEEG---MSVEIAMQWNESYGESVYTFANTIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQ
Sbjct: 175 THEGGTHEEGFRAALTSVVNRYGTEKKLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    +    +  +NP EA  +++            ++ ++   RK
Sbjct: 235 TKTKLGNTPVKSFVQRVCNEWLVDWFDRNPAEAKIIIQKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRVQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           A  +++  N ++  L+ ALG      +  E LRY 
Sbjct: 355 ARIDRVLKNAEVQALITALGTGIHDDFDIEKLRYH 389


>gi|6729251|dbj|BAA89747.1| DNA gyrase subunit B [Mycobacterium tuberculosis]
 gi|6729265|dbj|BAA89754.1| DNA gyrase subunit B [Mycobacterium tuberculosis]
 gi|6729267|dbj|BAA89755.1| DNA gyrase subunit B [Mycobacterium tuberculosis]
 gi|6729269|dbj|BAA89756.1| DNA gyrase subunit B [Mycobacterium tuberculosis]
 gi|6729273|dbj|BAA89758.1| DNA gyrase subunit B [Mycobacterium tuberculosis]
 gi|6729275|dbj|BAA89759.1| DNA gyrase subunit B [Mycobacterium tuberculosis]
 gi|6729279|dbj|BAA89761.1| DNA gyrase subunit B [Mycobacterium tuberculosis]
 gi|6729281|dbj|BAA89762.1| DNA gyrase subunit B [Mycobacterium tuberculosis]
 gi|6729283|dbj|BAA89763.1| DNA gyrase subunit B [Mycobacterium tuberculosis]
 gi|6729287|dbj|BAA89765.1| DNA gyrase subunit B [Mycobacterium tuberculosis]
 gi|6729289|dbj|BAA89766.1| DNA gyrase subunit B [Mycobacterium tuberculosis]
 gi|6729291|dbj|BAA89767.1| DNA gyrase subunit B [Mycobacterium tuberculosis]
 gi|6729293|dbj|BAA89768.1| DNA gyrase subunit B [Mycobacterium tuberculosis]
 gi|6729295|dbj|BAA89769.1| DNA gyrase subunit B [Mycobacterium tuberculosis]
 gi|6729297|dbj|BAA89770.1| DNA gyrase subunit B [Mycobacterium tuberculosis]
 gi|6729299|dbj|BAA89771.1| DNA gyrase subunit B [Mycobacterium tuberculosis]
          Length = 419

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 136/425 (32%), Positives = 213/425 (50%), Gaps = 35/425 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y ISGGLHGVG+SVVNALS  L V + R    +SQ + +  PL    K+     K G
Sbjct: 1   SDAYAISGGLHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLGL--KQGAPTKKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY--------- 255
           + + F  DP +F     +D   + +  Q  A+L+  +    + ++   ++          
Sbjct: 59  STVRFWADPAVFETT-EYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVA 117

Query: 256 ----------------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
                              +   F++PGGL  +++     ++ I S I     +  G   
Sbjct: 118 EAPKSASERAAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGH-- 175

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
             VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +    +  +
Sbjct: 176 -EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPN 234

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           +  DD+      ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A 
Sbjct: 235 LTGDDIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAK 294

Query: 417 KLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAG
Sbjct: 295 VVVNKAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAG 354

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           GSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY
Sbjct: 355 GSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRY 414

Query: 536 EKVII 540
            K+++
Sbjct: 415 HKIVL 419


>gi|33590336|gb|AAQ22708.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. luminescens]
          Length = 383

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 139/387 (35%), Positives = 210/387 (54%), Gaps = 15/387 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS++L + + R   +  Q +  G+P SPL+   +   + GTR+ F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGET-EQTGTRVRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P    F +   F    L K  +  ++L+  V       +   E       + F++ GG+
Sbjct: 60  WPSMDTFRNNTEFQHDILAKRLRELSFLNSGVSIRLIDKRTNIE-------DHFHYEGGI 112

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K +++   +N++ I   +F   TEK G     VE ++ W +     I  + N I   +GG
Sbjct: 113 KAFVEFLNKNKTPIHPNVFYFSTEKDGI---GVEISMQWNDGFQENIYCFTNNIPQRDGG 169

Query: 329 THESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH  G R A+TR +  Y +      K  +S   DD     V ++SV + +P+F+ QTK K
Sbjct: 170 THLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDK 229

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIR 445
           LVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+ 
Sbjct: 230 LVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVSKIIDAARAREAARKAREMTRRKGALD 289

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +
Sbjct: 290 LAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 349

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREED 532
           K+ ++Q++  L+ ALGC         D
Sbjct: 350 KMLSSQEVATLITALGCGIGRDEYNPD 376


>gi|29652974|gb|AAO87456.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652976|gb|AAO87457.1| DNA gyrase B [Listeria monocytogenes]
          Length = 195

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 85/194 (43%), Positives = 118/194 (60%), Gaps = 2/194 (1%)

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +R +    + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+L
Sbjct: 4   AKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAIL 63

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           P+RGKILNV  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAH
Sbjct: 64  PIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAH 123

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           I +LLLT FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  
Sbjct: 124 IRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDT 181

Query: 611 KIEISRFKGLGEML 624
           K  I R+KGLGEM 
Sbjct: 182 KYSIQRYKGLGEMN 195


>gi|19912079|dbj|BAB88351.1| DNA gyrase subunit B [Cytophaga sp. MBIC04664]
          Length = 391

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 143/395 (36%), Positives = 210/395 (53%), Gaps = 9/395 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+S VNALSD L  TV R   I+ Q++ RG  L P+++  +  + RGT +TF
Sbjct: 1   VSGGLHGVGVSCVNALSDHLTATVFRDGVIWQQEYERGKALYPVKRIGETDD-RGTEVTF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD  IF     +    L    +  ++L+  V    +  ++  EK      E F+   GL
Sbjct: 60  HPDNTIFTQTIEYSYETLANRMRELSFLNKGVTISITDKRQKDEKG-EYVGETFFSNEGL 118

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGG 328
           K +++    NR  +   +   + EK       VE A+ +     E    Y N I T EGG
Sbjct: 119 KEFVKFLDGNRESLIQGVIAMEGEKNDIP---VEVAMIYNTSYTENLHSYVNNINTHEGG 175

Query: 329 THESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH SG R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F GQTKTK
Sbjct: 176 THLSGFRRGLTSTLKKYADASGMLDKLKFEIQGDDFREGLTAIVSVKVSEPQFEGQTKTK 235

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IR 445
           L + +    V  A+ +    YL ++P +A  +++ VI  ++ R    K RE+ ++   + 
Sbjct: 236 LGNREVSAAVSQAVSEMLTDYLEEHPDDAKTIVQKVILAAQARHAASKAREMVQRKNVMS 295

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKL+DCS+      E+F+VEGDSAGG+AK  R+R+ QA+LPLRGKILNV  A   
Sbjct: 296 GGGLPGKLSDCSEQDPEKCEIFLVEGDSAGGTAKMGRDRNFQAILPLRGKILNVEKAMQH 355

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           K+  N++I ++  ALG    ++   + L  EK+  
Sbjct: 356 KVFENEEIKNMYTALGVTIGTEEDSKALNLEKLRY 390


>gi|308153156|dbj|BAJ22167.1| DNA gyrase subunit B [Mycobacterium cookii]
          Length = 421

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 139/427 (32%), Positives = 214/427 (50%), Gaps = 35/427 (8%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
            DN  Y +SGGLHGVG+SVVNALS  L V ++R  + + Q + R +P +   K+     K
Sbjct: 1   GDNGAYAVSGGLHGVGVSVVNALSTRLEVEISRDGSEWYQTYDRSVPGTL--KQGDKTKK 58

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-------- 254
            GT + F  DP IF     +D   + +  Q  A+L+  +    S ++   ++        
Sbjct: 59  TGTTVRFWADPGIFETTN-YDFETVARRLQEMAFLNKGLTINLSDERVTKDEVVDEVVSD 117

Query: 255 -----------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                                +   F++PGGL  +++     ++ I S I     +  G 
Sbjct: 118 TAEAPKSAEEKAAESVAPHKVKHRTFHYPGGLVDFVKHINRTKNPIHSSIVDFSGKGPGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRA 354
               VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +     + 
Sbjct: 178 ---EVEIAMQWNGGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKDKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
            ++  DD+      ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP +
Sbjct: 235 PNLTGDDIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKICNEQLSHWFESNPAD 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  +L   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDS
Sbjct: 295 AKTVLNKAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    L
Sbjct: 355 AGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDLAKL 414

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 415 RYHKIVL 421


>gi|188529789|gb|ACD62580.1| GyrB [Micromonospora sp. 15]
          Length = 393

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 125/399 (31%), Positives = 210/399 (52%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  +   + +   ++ Q+++   P    +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAAEIHKSGFVWRQQYNNSKPSPLDK--GETTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PDP +F     FD   + +  Q  A+L+  ++     ++   E+ G   +  F+
Sbjct: 59  SAVSFWPDPDVFETV-DFDFQTIYRRLQEMAFLNRALRIHLLDERVAEEEDGRQREVTFF 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    ++S I   +   + E++G    ++E A+ W E     + ++ NTI 
Sbjct: 118 YEGGIADFVRHLNASKSPIHKTVVEFEAEEEG---MSLEIAMQWNESYGESVYTFANTIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQ
Sbjct: 175 THEGGTHEEGFRSALTSVVNRYGADKKLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    D    +  +NP EA  ++ +           ++ ++   RK
Sbjct: 235 TKTKLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKMIITKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY KV++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDMEKLRYHKVVL 393


>gi|110612671|gb|ABG78298.1| GyrB [uncultured bacterium]
          Length = 406

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 149/416 (35%), Positives = 216/416 (51%), Gaps = 13/416 (3%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FDN+TY++SGGLHGVG+SVVNALS+ L + + ++   F Q + +GIP +PL         
Sbjct: 1   FDNNTYKVSGGLHGVGVSVVNALSETLFLDIDQKGNHFRQVYHKGIPEAPLAITGTSETT 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
             T I F PD  I      F    L    +   YL+  +            +     +E 
Sbjct: 61  G-TSIRFYPDLTIMETD-AFSFDVLAHRFRELGYLNPALTII-------LREEETLREEV 111

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
           F+  GG++++L    EN+  I   +   K+   G+    + +      +   + SY N I
Sbjct: 112 FHDEGGIRSFLLFVNENKRTIHDPLSFRKSFDNGST-FEISFQYQDTTDAETLLSYVNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T EGGTH  G R ALTR + ++ +     +   +  +D+      I+S+ I  P+F GQ
Sbjct: 171 PTREGGTHVRGFRAALTRVVNRFIKDKNLNKGEEVRGEDIREGLSAIVSIKIPNPQFEGQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TK KL S      +E  L +  +    +    A  + +  I  ++ R   RK RE   RK
Sbjct: 231 TKAKLGSSWVSGAMETFLAEALEDAFEKQGAVARAIADKAILSAQAREAARKARELTKRK 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC +N    +EL+IVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  
Sbjct: 291 NVLEGSNLPGKLADCQENDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKGKILNVEK 350

Query: 502 AG-SEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLL 555
           +   EK   + ++  L+ A+GC   ++      LRY K+IIMTDADVDG+HI +LL
Sbjct: 351 SKGVEKFITHDEVRALITAVGCGLGAEEFSLKNLRYHKIIIMTDADVDGSHIRTLL 406


>gi|253741316|gb|ACT34977.1| DNA gyrase subunit B [Mycobacterium tuberculosis]
          Length = 419

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 137/425 (32%), Positives = 213/425 (50%), Gaps = 35/425 (8%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+  Y ISGGLHGVG+SVVNALS  L V + R    +SQ + +  PL    K+     K 
Sbjct: 1   DSDAYAISGGLHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLGL--KQGAPTKKT 58

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY-------- 255
           G+ + F  DP +F     +D   + +  Q  A+L+  +    + ++   ++         
Sbjct: 59  GSTVRFWADPAVFETT-EYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDV 117

Query: 256 -----------------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH 298
                               +   F++PGGL  +++     ++ I S I     +  G  
Sbjct: 118 AEAPKSASERAAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGH- 176

Query: 299 RGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAI 355
              VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +    +  
Sbjct: 177 --EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDP 234

Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415
           ++  DD+      ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A
Sbjct: 235 NLTGDDIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDA 294

Query: 416 TKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSA 474
             ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSA
Sbjct: 295 KVVVNKAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSA 354

Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
           GGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LR
Sbjct: 355 GGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIGKLR 414

Query: 535 YEKVI 539
           Y K++
Sbjct: 415 YHKIV 419


>gi|188529770|gb|ACD62571.1| GyrB [Micromonospora sp. 65]
          Length = 393

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 123/399 (30%), Positives = 206/399 (51%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V + +   ++ Q+++   P    +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQRYNHSKPTPLEK--GEATDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PDP +F     FD   + +  Q  A+L+  +      D+   ++ G   +  F 
Sbjct: 59  SAVSFWPDPDVFETV-DFDFQTIYRRLQEMAFLTRGLTIHLLDDRVPEDEEGKTREVTFR 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    +++ I   +     E+ G    + E A+ W E     + ++ N I 
Sbjct: 118 YDGGIADFVRHLNASKNPIHKTVVEFGAEETG---MSAEIAMQWNESYGESVYTFANNIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISI-ISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +       +D+      I+SV + +P+F GQ
Sbjct: 175 THEGGTHEEGFRAALTSVVNRYGAEKKLLKGDERLSGEDIREGLAAIISVKLTDPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    +P   +  +NP EA  +++            ++ ++   RK
Sbjct: 235 TKTKLGNTPVKGFVQRVCNEPLVDWFDRNPAEAKIIIQKASQAARARIAAQQARKPARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY K+++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDIEKLRYHKIVL 393


>gi|295388308|gb|ADG03050.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 150/404 (37%), Positives = 231/404 (57%), Gaps = 15/404 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+I F P  + F +   F    L K  +  ++L+  V      ++E        +++ F
Sbjct: 60  GTQIRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KQDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTI 322
            + GG++ ++Q    N++ I  +IF    E++     +VE A+ W +     I  + N I
Sbjct: 113 MYEGGIQAFVQHLNTNKTPIIEKIFHFDLERED--GISVEVAMQWNDGLQENIFCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  + +      K   +   DD    +  ++SV + +P+F+
Sbjct: 171 PQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGSTAVVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE+A+ +    +LV+NP EA  +   +I+ +  R   RK R    
Sbjct: 231 SQTKDKLVSSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|188529764|gb|ACD62568.1| GyrB [Micromonospora sp. 37]
          Length = 393

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 129/399 (32%), Positives = 214/399 (53%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS ++ V + +  +++ Q ++   P    +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTKMFVEIHKSGSVWRQHYTNSKPSPLEK--GEATDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PDP +F     FD   + +  Q  A+L+  ++     ++   E+ G   +  FY
Sbjct: 59  SAVSFWPDPDVFETV-DFDFQTIYRRLQEMAFLNRALRIHLLDERVAEEEDGRQREVTFY 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    ++S I   +   + E++G    ++E A+ W E     + ++ NTI 
Sbjct: 118 YEGGIADFVRHLNASKSPIHKTVVEFEAEEEG---MSLEIAMQWNESYGESVYTFANTIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT G+ +Y    +  +    +  +D+      I+SV +  P+F GQ
Sbjct: 175 THEGGTHEEGFRSALTSGVNRYGTDKKLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    D    +  +NP EA  ++ +           ++ ++   RK
Sbjct: 235 TKTKLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKMIITKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC     H +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPHESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY KV++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDMEKLRYHKVVL 393


>gi|188529787|gb|ACD62579.1| GyrB [Micromonospora chalcea]
          Length = 393

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 123/399 (30%), Positives = 206/399 (51%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V + +   ++ Q++    P    +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQRYDHSKPTPLEK--GEETDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PDP +F     FD   + +  Q  A+L+  +      ++   ++ G   +  F+
Sbjct: 59  SAVSFWPDPDVFETV-DFDFHTIYRRLQEMAFLTRGLTIHLLDERVPEDEDGKTREVTFH 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    ++S I   +     E+ G    +VE A+ W E     + ++ N I 
Sbjct: 118 YEGGIADFVRHLNASKSPIHRTVVEFGAEETG---MSVEIAMQWNESYGESVYTFANNIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISI-ISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +       +D+      I+SV + +P+F GQ
Sbjct: 175 THEGGTHEEGFRAALTSVVNRYGADKKLLKGDERLSGEDIREGLAAIISVKLTDPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    +    +  +NP EA  +++            ++ ++   RK
Sbjct: 235 TKTKLGNTPVKGFVQRVCNESLVDWFDRNPAEAKIIIQKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY K+++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDIEKLRYHKIVL 393


>gi|6729261|dbj|BAA89752.1| DNA gyrase subunit B [Mycobacterium asiaticum]
          Length = 421

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 139/427 (32%), Positives = 215/427 (50%), Gaps = 35/427 (8%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
            +NS Y +SGGLHGVG+SVVNALS  L V + R    +SQ + R +P +   K+ +   K
Sbjct: 1   GENSGYTVSGGLHGVGVSVVNALSTRLEVDIKRDGHEWSQYYERAVPGTL--KQGEATKK 58

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-------- 254
            GT I F  DP IF     +D   + +  Q  A+L+  +    + ++   ++        
Sbjct: 59  TGTTIRFWADPDIFETT-QYDFETVARRLQEMAFLNKGLTINLTDERVDQDEVVDEVVSD 117

Query: 255 -----------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                                +   F++PGGL  +++     +S I   +   + +  G 
Sbjct: 118 TADAPKSAEEKAAESKAPHKVKHRTFHYPGGLVDFVKHINRTKSPIQQSVIDFEGKGTGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRA 354
               VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +     + 
Sbjct: 178 ---EVEIAMQWNGGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
            ++  DD+      ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP E
Sbjct: 235 PNLTGDDIREGLAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPSE 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDS
Sbjct: 295 AKTVVNKAVSSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    L
Sbjct: 355 AGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDISKL 414

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 415 RYHKIVL 421


>gi|255506571|gb|ACU12377.1| DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 389

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 149/401 (37%), Positives = 228/401 (56%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P P IF D   F    L K  +  ++L+  V      +++  E         F 
Sbjct: 60  TEVRFWPSPTIFSDTL-FHYEILAKRLRELSFLNSGVSIRLLDERDGRE-------AHFC 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH  G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ 
Sbjct: 169 QRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTK KLVS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   R
Sbjct: 229 QTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 349 KARFDKMISSQEVGTLITALGCGIGRDEYNPDKLRYHSIII 389


>gi|302746257|gb|ADL62719.1| GyrB [Morganella morganii subsp. morganii]
          Length = 386

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 137/397 (34%), Positives = 212/397 (53%), Gaps = 16/397 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVN LS++L + + R   +  Q +  G P   L    +  +K GTR
Sbjct: 1   SYKVSGGLHGVGVSVVNPLSEKLELVIRRDGKVHEQIYRHGEPQDRLTVVGET-DKTGTR 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F P    F  +  F    L K  +  ++L+  V       ++  E       + F++ 
Sbjct: 60  VRFWPSMDTFKGETEFQYDILAKRLRELSFLNSGVSIRLIDKRDGKE-------DHFHYE 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+K +++     ++ I + +F   TEK       VE ++ W +     +  + N I   
Sbjct: 113 GGIKAFVEYLSRAKTSIHNNVFYFSTEKDDI---GVEISMQWNDSFQENVYCFTNNIPQR 169

Query: 326 EGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GG H +G R A+TR +  Y E      K  +S   DD     V ++SV + +P+F+ QT
Sbjct: 170 DGGAHLAGFRAAMTRTLNSYIEKEGLNKKSKVSTTGDDAREGLVAVISVKVPDPKFSSQT 229

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKT 442
           K KLVS + +  VE  + +    YL +NP +   ++  +I+ +  R   R+ R    RK 
Sbjct: 230 KDKLVSSEVKTAVETLMNEKLSEYLDENPNDTKIIVGKIIDAARAREAARRAREMTRRKG 289

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 ALDLAGLPGKLADCQERDPAFSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 349

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
             +K+  +Q++  L+ ALGC   R +Y  + LRY  +
Sbjct: 350 RFDKMLASQEVATLITALGCGIGRDEYNPDKLRYHSI 386


>gi|295388304|gb|ADG03048.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 148/404 (36%), Positives = 229/404 (56%), Gaps = 15/404 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+I F P  + F +   F    L K  +  ++L+  V      ++E        +++ F
Sbjct: 60  GTQIRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KQDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ ++Q    N++ I  +IF    E++     +VE A+ W +     I  + N I
Sbjct: 113 MYEGGIQAFVQHLNTNKTPIIEKIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  + +     +        DD       ++SV + +P+F+
Sbjct: 171 PQRDGGTHLAGFRAALTRTLNSFMDKEGFPKKAKTATSGDDAREGLTAVVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE+A+ +    +LV+NP EA  +   +I+ +  R   RK R    
Sbjct: 231 SQTKDKLVSSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEG+SAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPALSELYIVEGNSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|10121861|gb|AAG13403.1|AF285157_1 topoisomerase II alpha-2 [Homo sapiens]
          Length = 526

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 100/544 (18%), Positives = 187/544 (34%), Gaps = 78/544 (14%)

Query: 17  QGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD------ 70
           Q  +E ++ +    +  A    S    Y          LE + +RP  YIG  +      
Sbjct: 7   QPVNENMQVNKIKKNEDAKKRLSVERIYQKK-----TQLEHILLRPDTYIGSVELVTQQM 61

Query: 71  ----------------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDN 112
                              L+ +F E++ NA D        + I V++D  N  +++ +N
Sbjct: 62  WVYDEDVGINYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNN 121

Query: 113 GRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVT 172
           G+GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V 
Sbjct: 122 GKGIPVVEH-KVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 180

Query: 173 V--ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLL 228
                   +F Q +   +  +   + +    +  T ITF+PD   F  +       A ++
Sbjct: 181 TASREYKKMFKQTWMDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMV 240

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           +     A  +  VK   + +K   +              G ++Y+   L+++   +    
Sbjct: 241 RRAYDIAGSTKDVKVFLNGNKLPVK--------------GFRSYVDMYLKDKLDETGNSL 286

Query: 289 TGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
               E+        E  +   E+  +  S+ N+I T +GG H   +   +   +      
Sbjct: 287 KVIHEQVNH---RWEVCLTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLVD-VVK 342

Query: 349 TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
            +NK  +++ +  +       ++  I  P F  QTK  +            L + F    
Sbjct: 343 KKNKGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQPKSFGSTCQLSEKFIKAH 402

Query: 409 VQNPIEATKLLEWVIERS-----------------------EERLRRRKQREVNRKTAIR 445
           + +          +I                          + +++  K+    +   I+
Sbjct: 403 LYSRFLIDPFFPNMIPNMIFSFSKAAIGCGIVESILNWVKFKAQVQLNKKCSAVKHNRIK 462

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASA 502
            +       D     +    L + EGDSA   A        R    V PLRGKILNV  A
Sbjct: 463 GIPKLDDANDAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREA 522

Query: 503 GSEK 506
             ++
Sbjct: 523 SHKQ 526


>gi|295388388|gb|ADG03089.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 149/404 (36%), Positives = 228/404 (56%), Gaps = 15/404 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+I F P  +       F    L K  +  ++L+  V      ++E        +++ F
Sbjct: 60  GTQIRFWPSAET-SSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KQDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ ++Q    N++ I  +IF    E++     +VE A+ W +     I  + N I
Sbjct: 113 MYEGGIQAFVQHLNTNKTPIIEKIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+
Sbjct: 171 PQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE+A+ +    +LV+NP EA  +   +I+ +  R   RK R    
Sbjct: 231 SQTKDKLVSSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|308152505|dbj|BAJ22231.1| DNA gyrase subunit B [Mycobacterium austroafricanum]
          Length = 419

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 133/424 (31%), Positives = 209/424 (49%), Gaps = 35/424 (8%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y++SGGLHGVG+SVVNALS  L   + +    + Q + R +P +   K+ +     GT
Sbjct: 2   GAYQVSGGLHGVGVSVVNALSTRLEADIRKDGYEWHQTYDRSVPGTL--KQGEKSKDTGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------------- 249
            I F  DP IF     +D   + +  Q  A+L+  +    + ++                
Sbjct: 60  TIRFWADPDIFETTN-YDFETIARRLQEMAFLNKGLTIELTDERVTPADVVDDVVSDHAE 118

Query: 250 ---------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                      A      +   F++PGGL  +++     ++ I   I     + +G    
Sbjct: 119 APKSAEEKAAEAAAPQKVKHRVFHYPGGLVDFVKHINRTKTPIQPSIIDFDGKGEGH--- 175

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISI 357
            VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +     +  ++
Sbjct: 176 EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLLKDKDPNL 235

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP EA  
Sbjct: 236 TGDDIREGLAAVISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEQLSHWFEANPAEAKT 295

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGG
Sbjct: 296 VVNKAVSSAQARMAARKARELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGG 355

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY 
Sbjct: 356 SAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDISKLRYH 415

Query: 537 KVII 540
           K+++
Sbjct: 416 KIVL 419


>gi|188529773|gb|ACD62572.1| GyrB [Micromonospora chalcea]
          Length = 393

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 123/399 (30%), Positives = 205/399 (51%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V + +   ++ Q++    P    +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQRYDHSKPTPLEK--GEETDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           +  +F PDP +F     FD   + +  Q  A+L+  +      ++   ++ G   +  F+
Sbjct: 59  SAASFWPDPDVFETV-DFDFHTIYRRLQEMAFLTRGLTIHLLDERVPEDEDGKTREVTFH 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    ++S I   +     E+ G    +VE A+ W E     + ++ N I 
Sbjct: 118 YEGGIADFVRHLNASKSPIHKTVVEFGAEETG---MSVEIAMQWNESYGESVYTFANNIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISI-ISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +       +D+      I+SV + +P+F GQ
Sbjct: 175 THEGGTHEEGFRAALTSVVNRYGADKKLLKGDERLSGEDIREGLAAIISVKLTDPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    +    +  +NP EA  +++            ++ ++   RK
Sbjct: 235 TKTKLGNTPVKGFVQRVCNESLVDWFDRNPTEAKIIIQKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY K+++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDIEKLRYHKIVL 393


>gi|163256328|dbj|BAF95674.1| DNA gyrase subunit B [Bradyrhizobium sp. KO20A]
          Length = 261

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 99/270 (36%), Positives = 148/270 (54%), Gaps = 11/270 (4%)

Query: 87  DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146
           DE +AG+A+ +EV L+ +  +TV D+GRGIPV+ H K    S  E+I+T LHAGGKFD +
Sbjct: 1   DEALAGHASRVEVILNADNSVTVRDDGRGIPVDIH-KGEGISAAEVIMTQLHAGGKFDQN 59

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS +L + + R N     +F+ G  ++PL+       KRGT 
Sbjct: 60  SYKVSGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAHGDAVAPLKVVGDAPGKRGTE 119

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           +TF    + F +   +D A L    +  A+L+  V    S  +   EK      EE ++ 
Sbjct: 120 VTFLASTETFKN-IEYDFATLEHRLRELAFLNSGVNIVLSDMRHAVEKR-----EEMFYS 173

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTD 325
           GG++ +++    N+  +       ++E  G     VE A+ W +   E    + N I   
Sbjct: 174 GGVEEFVKYLDRNKKALVPAPIMVRSEANGI---GVEAALWWNDSYHENVLCFTNNIPQR 230

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAI 355
           +GGTH +G R ALTR +  YAE    K  I
Sbjct: 231 DGGTHLAGFRGALTRQVNGYAEANAKKEKI 260


>gi|221504652|gb|EEE30325.1| DNA gyrase subunit B, putative [Toxoplasma gondii VEG]
          Length = 1234

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 88/169 (52%), Positives = 106/169 (62%), Gaps = 8/169 (4%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           Y + SIR+LEGLEPVRMRPGMYIG TD + LHHL  E IDNA+DEV  G    I V L  
Sbjct: 242 YTSDSIRVLEGLEPVRMRPGMYIGSTDSEGLHHLVWEAIDNAVDEVENGDCRRIVVVLHA 301

Query: 104 N-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD------NSTYEISGGLHG 156
           +   +TV D+GRGIP + HP+    S LE + T LHAGGKF        S+Y  +GGLHG
Sbjct: 302 DRRSVTVADDGRGIPCDVHPQ-TGLSALETVFTKLHAGGKFSPASQTGASSYAFAGGLHG 360

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           VG SVVNALS +L V+V R   + +  FSRG  +SPL  +      RG 
Sbjct: 361 VGSSVVNALSSQLRVSVLRDGKLHAISFSRGQVVSPLTVQTSPSLSRGN 409



 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 100/248 (40%), Positives = 137/248 (55%), Gaps = 12/248 (4%)

Query: 347  ELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
                ++++++I  + L    VG++S+ +RE EF GQTK KL +   +  VE  + D   +
Sbjct: 774  PQNSHEKSLNIPGEFLREGLVGVVSLKMREAEFEGQTKKKLGNKKVRGIVEELVTDALLN 833

Query: 407  YLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL----PGKLADCSQNIAH 462
            Y  ++P    KLL+            +  R+  R             PGKL+DCS   A 
Sbjct: 834  YFERHPQNLQKLLQKATAARAAAAAAKAARDFARAKQQSSSLHLTLLPGKLSDCSPTNAR 893

Query: 463  GT---ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA-GSEKIRNNQQIMDLVQ 518
                 ELFIVEG+SA GSAKQAR+R  QA+LPLRGKILNV       +I  N+++  LV 
Sbjct: 894  ERLSKELFIVEGESAAGSAKQARDRRTQAILPLRGKILNVEKLGNFARIFENEELKALVA 953

Query: 519  ALGCRTRS----QYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
            ALG             + LRY +VII+TDADVDGAHI SLLLTFF++   +L  Q  +F+
Sbjct: 954  ALGISVTKAGEVSADLDGLRYSRVIILTDADVDGAHIRSLLLTFFFRLQPELFRQGRVFV 1013

Query: 575  ISPPLFRI 582
              PPLF+I
Sbjct: 1014 ACPPLFKI 1021



 Score = 66.0 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 22/45 (48%)

Query: 610  GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
              + + RFKGLGEM   QL+ T M    R L ++ +       ++
Sbjct: 1186 PGVTLQRFKGLGEMQPEQLRRTTMSPVTRILKKISVADAEAVSEE 1230


>gi|188529766|gb|ACD62569.1| GyrB [Micromonospora sp. 46]
          Length = 393

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 128/399 (32%), Positives = 208/399 (52%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V + +   ++ QK+    P +  +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKSGFVWRQKYHNSKPDALEK--GETTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PDP +F     FD   + +  Q  A+L+  +      ++    + G P +  FY
Sbjct: 59  SAVSFWPDPDVFETT-DFDFQTIYRRLQEMAFLNRALSIHLLDERVAEGEEGKPREVTFY 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    +++ +   +     E++G    +VE A+ W E     + ++ NTI 
Sbjct: 118 YEGGIADFVRHLNASKNPMHKTVVEFAAEEEG---MSVEIAVQWNESYGESVYTFANTIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQ
Sbjct: 175 THEGGTHEEGFRAALTSVVSRYGADKKLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRK 441
           TKTKL S   +  V+    D    +   NP EA  +++            ++ ++   RK
Sbjct: 235 TKTKLGSTPVKSFVQRVCNDRLVDWFDWNPAEAKTIIQKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY KV++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDMEKLRYHKVVL 393


>gi|68445348|dbj|BAE03175.1| DNA gyrase subunit B [actinobacterium Aac-33]
          Length = 399

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 133/401 (33%), Positives = 213/401 (53%), Gaps = 7/401 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG SVVNALS+ L V V  +  +++Q++ RG+P +PL+K  +     G
Sbjct: 1   GGGYAVSGGLHGVGSSVVNALSNRLTVAVKTEGFLWTQEYLRGVPTAPLKK-GEAVGDTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T ITF  D +IF     ++   L +  Q  A+L+  V      ++ E  +  G      +
Sbjct: 60  TTITFWADDEIFETTT-YNFETLSRRFQEMAFLNRGVSIELIDERPEYKDDEGNSRSVHY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG+  +++     +  +          +    R + E A+ W  +    + ++ N I
Sbjct: 119 KYDGGIADFVRYINAAKGEMVHPQVIEIGSEDKERRISAEIALQWNNQYSESVYTFANVI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
            T +GGTHE G R ALT  + +YA+  Q   ++  ++  +D+    V I+SV + EP+F 
Sbjct: 179 QTPDGGTHEEGFRSALTNVVNRYAKDKQLLKEKDDNLSGEDIREGLVAIVSVKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTK KL + +A+  V+    +    +  +NP EA  ++   I+ +  R+  RK RE+ R
Sbjct: 239 GQTKAKLGNTEARTFVQKITYEALADWFDRNPGEARDIIRKSIQAATARIAARKARELTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +   + LPGKL+DC        E+F+VEGDSAGGSAKQ R+   QA++P+RGKILNV
Sbjct: 299 RKGLLESMALPGKLSDCQSTNPVECEIFVVEGDSAGGSAKQGRDPRVQAIMPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +K+  N +   L+ ALG      +    LRY K+++
Sbjct: 359 EKARIDKVLQNSRGAGLISALGTGIHEDFDVSRLRYHKIVL 399


>gi|51921646|gb|AAU13949.1| gyrase B subunit [Vibrio vulnificus]
          Length = 391

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 145/401 (36%), Positives = 220/401 (54%), Gaps = 15/401 (3%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS+++ +T+ R     SQ +  G+P +PL          GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSEKVLLTIHRGGHTHSQTYRHGVPDAPLAIIGDTEK-TGTTVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F    L K  +  ++L+  V      ++E  +K      + F + GG++
Sbjct: 60  PSAETFTNI-EFHYDILAKRLRELSFLNSGVSIKLFDEREEDKK------DHFMYEGGIQ 112

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            ++     N++ I  ++F    E++      VE A+ W +     I  + N I   +GGT
Sbjct: 113 AFVTHLNRNKTPIHEKVFHFNAERED--GIAVEVAMQWNDGFQENIYWFTNNIPQRDGGT 170

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R ALTR +  Y +      K   +   DD       ++SV + +P+F+ QT+ +L
Sbjct: 171 HLAGFRAALTRTLNSYMDKEGYSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTQDQL 230

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRK 446
           V  + +  VE+ + D  + +L ++P EA  +   +I+ +  R   RK R    RK A+  
Sbjct: 231 VLSEVKSAVESFMADKLNDFLAEHPSEAKTVCSKIIDAARAREAARKAREMTRRKGALDL 290

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 291 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 350

Query: 507 IRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADV 546
           + ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADV
Sbjct: 351 MLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADV 391


>gi|37956525|gb|AAP15348.1| gyrase B [Geobacter grbiciae]
          Length = 382

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 146/393 (37%), Positives = 224/393 (56%), Gaps = 16/393 (4%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L + + R   +F Q ++ G PL+PLE   + +  RGTRITF PD  IF     F    L 
Sbjct: 1   LELEIRRDGKVFQQSYAYGAPLTPLEIVGETKK-RGTRITFLPDDTIFETT-EFSFDILS 58

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           +  +  A+L+  V+   S ++E        +  +F++ GG+ ++++    NR+++  +  
Sbjct: 59  QRLRELAFLNAGVRITISDERE------EGKHHDFHYEGGIVSFVEYLNRNRTVLHPKPV 112

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
             + E+ G     +E AI + +    ++ ++ N I T EGGTH  G R ALTR +  YA 
Sbjct: 113 YFRGERAGI---DMEIAIQYNDSYDEKVFTFANNINTHEGGTHLVGFRAALTRSMNSYAG 169

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
             +   K  +SI  +DL      ++SV I +P+F GQTKTKL + + +  VE+ + +   
Sbjct: 170 ANELTKKEKVSISGEDLREGLTAVISVKIPQPQFEGQTKTKLGNSEVKGFVESLMNEQLA 229

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +L +NP  A  ++   IE +  R   RK RE   RK+A+    LPGKLADC +      
Sbjct: 230 VFLEENPKIAKDIIGKSIEAARAREAARKARELTRRKSALDISSLPGKLADCQERDPALC 289

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           EL++VEGDSAGGSAKQ R+R  +A+LPL+GKILNV  A  +K+ ++Q+I  L+ ALG   
Sbjct: 290 ELYLVEGDSAGGSAKQGRDRKFRAILPLKGKILNVEKARFDKMLSSQEIGTLITALGTSI 349

Query: 525 RSQYRE-EDLRYEKVIIMTDADVDGAHIASLLL 556
             +  +   LRY ++I+MTDADVDG+HI +LLL
Sbjct: 350 GKEDFDVAKLRYHRIIVMTDADVDGSHILTLLL 382


>gi|295388282|gb|ADG03037.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 150/404 (37%), Positives = 230/404 (56%), Gaps = 15/404 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+I F P  + F +   F    L K  +  ++L+  V      ++E        +++ F
Sbjct: 60  GTQIRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KQDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ ++Q    N++ I  +IF    E++     +VE A+ W +     I  + N I
Sbjct: 113 MYEGGIQAFVQHLNTNKTPIIEKIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+
Sbjct: 171 PQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE+A+ +    +LV+NP EA  +   +I+ +  R   RK R    
Sbjct: 231 SQTKDKLVSSEVKSAVESAMGEKPSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|188529745|gb|ACD62559.1| GyrB [Micromonospora sp. 86]
          Length = 393

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 123/399 (30%), Positives = 205/399 (51%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V + +   ++ Q++    P    +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKSGFVWRQQYHNSKPDPLEK--GETTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PDP +F     FD   + +  Q  A+L+  +      ++    + G P +  FY
Sbjct: 59  SAVSFWPDPDVFETT-DFDFQTIYRRLQEMAFLNRALSIHLLDERVAEGEEGKPREVTFY 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    +++ +   +     E++G    +VE A+ W E     + ++ NT  
Sbjct: 118 YEGGIADFVRHLNASKNPMHKTVVEFAAEEEG---MSVEIAMQWNESYGESVYTFANTTN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQ
Sbjct: 175 THEGGTHEEGFRAALTSVVNRYGADKKLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    D    +  +NP  A  +++            ++ ++   RK
Sbjct: 235 TKTKLGNTPVKSFVQRVCNDRLVDWFDRNPAVAKTIIQKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ AL       +  E LRY KV++
Sbjct: 355 ARIDRVLKNNEVQALITALDTGIHDDFDMEKLRYHKVVL 393


>gi|295388327|gb|ADG03059.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 150/404 (37%), Positives = 230/404 (56%), Gaps = 15/404 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDA-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+I F P  + F +   F    L K  +  ++L+  V      ++E        +++ F
Sbjct: 60  GTQIRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KQDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ ++Q    N++ I  +IF    E++     +VE A+ W +     I  + N I
Sbjct: 113 MYEGGIQAFVQHLNTNKTPIIEKIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+
Sbjct: 171 PQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE+A+ +    +LV+NP EA  +   +I+ +  R   RK R    
Sbjct: 231 SQTKDKLVSSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMT 394


>gi|6729227|dbj|BAA89735.1| DNA gyrase subunit B [Micromonospora purpureochromogenes]
          Length = 393

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 122/399 (30%), Positives = 205/399 (51%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS ++ V + +   ++ Q++    P    +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTKMAVEIHKSGFVWRQQYHHSKPTPLEK--GETTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PD  +F     FD   + +  Q  A+L+  +      ++    + G   +  F 
Sbjct: 59  SAVSFWPDADVFETV-DFDFQTIYRRLQEMAFLNRGITIHLLDERVPEGEEGKIREVTFR 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    +++ +   +     E++G    +VE A+ W E     + ++ N I 
Sbjct: 118 YDGGIADFVRHLNASKNPMHKTVVEFDAEEEG---MSVEIAMQWNESYGESVYTFANNIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQ
Sbjct: 175 THEGGTHEEGFRSALTSVVNRYGTDKKLLKGDEKLSGEDIREGLAAIISVKLTNPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    D    +  +NP EA  +++            ++ ++   RK
Sbjct: 235 TKTKLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKTIIQKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY KV++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDMEKLRYHKVVL 393


>gi|238787825|ref|ZP_04631622.1| DNA gyrase subunit B [Yersinia frederiksenii ATCC 33641]
 gi|238724168|gb|EEQ15811.1| DNA gyrase subunit B [Yersinia frederiksenii ATCC 33641]
          Length = 522

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 117/281 (41%), Positives = 175/281 (62%), Gaps = 4/281 (1%)

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G R A+TR +  Y +      K  IS   DD     + ++SV + +P+F+ QTK KLVS
Sbjct: 1   MGFRTAMTRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 60

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLR 448
            + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    
Sbjct: 61  SEVKTAVETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLGG 120

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ 
Sbjct: 121 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 180

Query: 509 NNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
           ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M ++I
Sbjct: 181 SSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEII 240

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           E+ H+++  PPL+++ +G +  Y  D++  ++        G
Sbjct: 241 ERGHVYIAQPPLYKVKKGKQEQYIKDDDAMEQYQMTLALDG 281



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            +  L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 437 FEGALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPEGRRMLRVMVKDAI----AAD 492

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 493 QLFTTLMGDAVEPRRAFIEENALRAANID 521


>gi|6729277|dbj|BAA89760.1| DNA gyrase subunit B [Mycobacterium tuberculosis]
          Length = 419

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 137/425 (32%), Positives = 213/425 (50%), Gaps = 35/425 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y ISGGLHGVG+SVVNALS  L V + R    +SQ + +  PL    K+     K G
Sbjct: 1   SDAYAISGGLHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLGL--KQGAPTKKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY--------- 255
           + + F  DP +F     +D   + +  Q  A+L+  +    + ++   ++          
Sbjct: 59  STVRFWADPAVFETT-EYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVA 117

Query: 256 ----------------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
                              +   F++PGGL  +++     ++ I S I     +  G   
Sbjct: 118 EAPKSASERAAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGH-- 175

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
             VE AI W       + ++ NTI T EGGTHE G R ALT  + KYA+  +    +  +
Sbjct: 176 -EVEIAIQWNAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPN 234

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           +  DD+      ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A 
Sbjct: 235 LTGDDIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAK 294

Query: 417 KLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAG
Sbjct: 295 VVVNKAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAG 354

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           GSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY
Sbjct: 355 GSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRY 414

Query: 536 EKVII 540
            K+++
Sbjct: 415 HKIVL 419


>gi|183987582|gb|ACC65781.1| topoisomerase II [Pleurotus salmoneostramineus]
          Length = 552

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 84/393 (21%), Positives = 168/393 (42%), Gaps = 23/393 (5%)

Query: 301 TVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISD 360
             E   A  +   +  S+ N+I T +GGTH + +   L +     A +T+  +  ++   
Sbjct: 4   RWEVGFATSDGTFQQVSFANSISTIKGGTHVNYISDQLAK--NLIAAITKKNKGATVKPA 61

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
            +       ++  I  P F GQTK  L    ++      L + F   + +     + +++
Sbjct: 62  QIKNHMWIFVNALIENPTFDGQTKETLTLPASKFGSRPTLSEEFMKKVQK-----SSIID 116

Query: 421 WVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
            V+  ++ +  ++ ++   +++T +  +       +     A    L + EGDSA   A 
Sbjct: 117 QVLNWAKFKADQQIKKTDGSKRTRLTGMAKLSDANNAGTKHAEKCTLILTEGDSAKSLAV 176

Query: 480 QA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR-Y 535
                  R N  V PLRGK+LNV  A  ++I  N++I ++ + +G +   +Y       Y
Sbjct: 177 AGLAVVGRDNFGVFPLRGKLLNVREARHDQIMKNEEIQNIKKIMGLQHNKEYSNVSSPRY 236

Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK-HLFLISPPLFRITQGTKSVYAHDE 594
            +++IMTD D DG+HI  LL+ F       L +    L     P+ R+T+G++       
Sbjct: 237 GRLMIMTDQDHDGSHIKGLLINFLDHFYPSLHKIPEFLVEFVTPIVRVTKGSQRKNFFTI 296

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
              ++ +E        K     +KGLG    +  +E     +K  +    +  +   L  
Sbjct: 297 PEYEQWIESTPDS--KKWTAKYYKGLGTSSDADAREYFSKMSKHMIPFATMEDEERPL-- 352

Query: 655 TQDSINKLMGTKADERFKFIQE--RASFID-DV 684
              + +K    KAD+R  ++++    +++D ++
Sbjct: 353 IDLAFSK---KKADDRKDWLRQFKPGTYLDHNL 382


>gi|83017261|dbj|BAE53550.1| DNA gyrase B [Microbulbifer sp. MBIC04035]
          Length = 389

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 147/401 (36%), Positives = 222/401 (55%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           ++TY++SGGLHGVG+SVVNALS EL +T+ R   I  Q +  G+P +PLE      +  G
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSKELKLTIRRGGKIHEQTYHHGVPQAPLEVVGD-SDTTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F+P    F +   F    L K  +  ++L+  V+     ++   E       E + 
Sbjct: 60  TTVHFKPSEDTFSNI-EFHFDVLAKRLRELSFLNSGVRIVLKDERSGKE-------EVYE 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   +N++ I+  +      + G     VE A+ W +     I  Y N I 
Sbjct: 112 YEGGLSAFVEFLNQNKTPINKVLHFQSQREDGI---AVEVALQWNDSFQENIFCYTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLAGFRAALTRGLNSYIEREGLGKKDKVNTTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  +   F  YL++NP EA  ++  +I+ ++ R   RK R    R
Sbjct: 229 QTKDKLVSSEVKPAVEQEMGHHFTDYLMENPQEAKSVVTKMIDAAKAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC Q     +E+++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQQKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++ ++  L+ ALGC   +S++  + LRY  +II
Sbjct: 349 KARFDKMLSSAEVGTLITALGCGIGKSEFNPDKLRYHSIII 389


>gi|83017255|dbj|BAE53547.1| DNA gyrase B [Microbulbifer sp. MBIC08252]
          Length = 389

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 147/401 (36%), Positives = 222/401 (55%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           ++TY++SGGLHGVG+SVVNALS EL +T+ R   I  Q +  G+P +PLE      +  G
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSKELKLTIRRGGKIHEQTYHHGVPQAPLEVVGD-SDTTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F+P    F +   F    L K  +  ++L+  V+     ++   E       E + 
Sbjct: 60  TTVHFKPSEDTFNNI-EFHFDVLAKRLRELSFLNSGVRIVLKDERSGKE-------EVYE 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   +N++ I+  +      + G     VE A+ W +     I  Y N I 
Sbjct: 112 YEGGLSAFVEFLNQNKTPINKVLHFQSQREDGI---AVEVALQWNDSFQESIFCYTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLAGFRAALTRGLNSYIEREGLGKKDKVNTTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  +   F  YL++NP EA  ++  +I+ ++ R   RK R    R
Sbjct: 229 QTKDKLVSSEVKPAVEQEMGHHFTDYLMENPQEAKSVVTKMIDAAKAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC Q     +E+++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQQKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++ ++  L+ ALGC   +S++  + LRY  +II
Sbjct: 349 KARFDKMLSSAEVGTLITALGCGIGKSEFNPDKLRYHSIII 389


>gi|126035236|gb|ABN72371.1| gyrase B subunit [Escherichia coli]
          Length = 382

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 142/393 (36%), Positives = 217/393 (55%), Gaps = 16/393 (4%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + F P
Sbjct: 1   GGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F+   L K  +  ++L+  V       ++  E       + F++ GG+K 
Sbjct: 60  SLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKA 112

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH
Sbjct: 113 FVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTH 169

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLV
Sbjct: 170 LAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLV 229

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447
           S + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+   
Sbjct: 230 SSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLA 289

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+
Sbjct: 290 GLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 349

Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 350 LSSQEVATLITALGCGIGRDEYNPDKLRYHNII 382


>gi|6729285|dbj|BAA89764.1| DNA gyrase subunit B [Mycobacterium tuberculosis]
          Length = 419

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 136/425 (32%), Positives = 213/425 (50%), Gaps = 35/425 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y ISGGLHGVG+SVVNALS  L V + R    +SQ + +  PL    K+     K G
Sbjct: 1   SDAYAISGGLHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLGL--KQGAPTKKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY--------- 255
           + + F  DP +F     +D   + +  Q  A+L+  +    + ++   ++          
Sbjct: 59  STVRFWADPAVFETT-EYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVA 117

Query: 256 ----------------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
                              +   F++PGGL  +++     ++ I S I     +  G   
Sbjct: 118 EAPKSASERAAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGH-- 175

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
             VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +    +  +
Sbjct: 176 -EVEIAVQWNAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPN 234

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           +  DD+      ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A 
Sbjct: 235 LTGDDIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAK 294

Query: 417 KLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAG
Sbjct: 295 VVVNKAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAG 354

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           GSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY
Sbjct: 355 GSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRY 414

Query: 536 EKVII 540
            K+++
Sbjct: 415 HKIVL 419


>gi|295388286|gb|ADG03039.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 151/404 (37%), Positives = 231/404 (57%), Gaps = 15/404 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+I FRP  + F +   F    L K  +  ++L+  V      ++E        +++ F
Sbjct: 60  GTQIRFRPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KQDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ ++Q    N++ I  +IF    E++     +VE A+ W +     I  + N I
Sbjct: 113 MYEGGIQAFVQHLNTNKTPIIEKIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+
Sbjct: 171 PQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE+A+ +    +LV+NP EA  +   +I+ +  R   RK R    
Sbjct: 231 SQTKDKLVSSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|210142362|dbj|BAG80972.1| DNA gyrase subunit B [Paenibacillus macquariensis subsp. defensor]
          Length = 389

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 153/400 (38%), Positives = 222/400 (55%), Gaps = 15/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG+SVVNALS++  VTV  +  I+ Q++ RG+P   +    +  ++ G
Sbjct: 1   GGGYKVSGGLHGVGVSVVNALSEKAVVTVKVKGHIYQQEYRRGVPQYDVRVIGE-SDEHG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF PDP+IF +   +D   LL   +  A+L+  +    + ++             F 
Sbjct: 60  TTVTFHPDPEIFTETTVYDYGTLLTRVREIAFLNKGIALTLNDER-------ADSSVRFM 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K Y++   E +  +  E    +  +       VE A+ + +     I S+CN I 
Sbjct: 113 YEGGIKEYVKFLNEKKEALHEEPIYVEGSRD---MMQVEVALQYNDSYTENIYSFCNNIN 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHESG + ALTR I  YA  T        ++  DD+      I+SV I EP+F G
Sbjct: 170 THEGGTHESGFKSALTRIINDYARKTGVIKDSNSNLSGDDVREGLTAIISVKIPEPQFEG 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + + +  VE+   +    +L +NP  + ++LE  ++ S  R   RK RE   R
Sbjct: 230 QTKTKLGNSEVRGIVESLFSEKLQEFLEENPAVSRRILEKGLQASRAREAARKARELTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS   A  +EL+IVEGDSAGGSAKQ R+R  QA LPLRGKILNV 
Sbjct: 290 KSALEVSALPGKLADCSSKDASISELYIVEGDSAGGSAKQGRDRHFQASLPLRGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  ++I +N +I +++ A+G      +     RY KVII
Sbjct: 350 KARLDRILSNAEIRNMITAMGTGIGEGFDLSKARYHKVII 389


>gi|6729188|dbj|BAA89727.1| DNA gyrase subunit B [Micromonospora coerulea]
          Length = 393

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 124/399 (31%), Positives = 208/399 (52%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS ++ V + +   ++ Q++    P    +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTKMAVEIHKSGFVWRQQYHNSKPSPLEK--GETTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + +TF PD  +F     FD   + +  Q  A+L+  ++     ++    + G   +  F+
Sbjct: 59  SAVTFWPDESVFETV-DFDFQTIYRRLQEMAFLNRALRIHLLDERVPEGEEGKLREVTFF 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    +++ I   +     E++G    +VE A+ W E     + ++ NTI 
Sbjct: 118 YEGGIADFVRHLNASKNPIHKTVVEFGAEEEG---MSVEIAMQWNESYGESVYTFANTIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQ
Sbjct: 175 THEGGTHEEGFRSALTSVVNRYGTDKKLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    +    +  +NP EA  ++ +           ++ ++   RK
Sbjct: 235 TKTKLGNTPVKSFVQRVCNEWLVDWFDRNPAEAKMIITKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY KV++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDMEKLRYHKVVL 393


>gi|18147175|dbj|BAB83068.1| DNA gyrase subunit B [Alcanivorax sp. 12W-23]
          Length = 390

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 148/402 (36%), Positives = 218/402 (54%), Gaps = 18/402 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+EL +T+ R   +  Q +  G+P  PLE      +  G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQLYRHGVPAMPLEVVGNT-DSSG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I FRP P+ F +   F    L K  +  ++L+  V+     ++   E       + F 
Sbjct: 60  TAIHFRPSPETFTNI-KFHYDILAKRLRELSFLNSGVRIHLLDERNGEE-------DVFE 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTI 322
           + GGL  ++    +N++ ++         E+ G     VE A+ W +   E    + N I
Sbjct: 112 YDGGLSAFVSYLNQNKTPLNQVFHFQFDREEDGI---AVEVAMQWNDSYQENLFCFTNNI 168

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  Y E      K   +   DD       ++SV + +P+F+
Sbjct: 169 PQRDGGTHLAGFRAALTRTLNSYMEKEGLLKKEKANPTGDDAREGLTAVISVKVPDPKFS 228

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVN 439
            QTK KLVS + +  VE  + + F  YL++NP EA  +   +I+ +  R   RK      
Sbjct: 229 SQTKDKLVSSEVKSAVEQTMGELFQDYLLENPQEAKAISSKIIDAARARDAARKAREMTR 288

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC Q     +EL+IVEGDSAGGSAKQ R+R NQA+LPL+GKILNV
Sbjct: 289 RKGALDIAGLPGKLADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILNV 348

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVII 540
             A  +K+ ++Q++  L+ ALGC         E LRY ++II
Sbjct: 349 EKARFDKMLSSQEVGTLITALGCGIGRDEYNVEKLRYHRIII 390


>gi|126035246|gb|ABN72376.1| gyrase B subunit [Enterobacter cloacae]
          Length = 381

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 144/392 (36%), Positives = 218/392 (55%), Gaps = 16/392 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL       +K GT + F
Sbjct: 1   VSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYQHGVPEAPLAVTGDT-DKTGTMVRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ GG+
Sbjct: 60  WPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE-------DHFHYEGGI 112

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   +GG
Sbjct: 113 KAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGG 169

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK K
Sbjct: 170 THLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDK 229

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIR 445
           LVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+ 
Sbjct: 230 LVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALD 289

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +
Sbjct: 290 LAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 349

Query: 506 KIRNNQQIMDLVQALGCRT-RSQYREEDLRYE 536
           K+ ++Q++  L+ ALGC   R +Y  + LRY 
Sbjct: 350 KMLSSQEVATLITALGCGIGRDEYNPDKLRYH 381


>gi|83017248|dbj|BAE53544.1| DNA gyrase B [Microbulbifer sp. MBIC08242]
 gi|83017250|dbj|BAE53545.1| DNA gyrase B [Microbulbifer sp. MBIC08247]
 gi|83017257|dbj|BAE53548.1| DNA gyrase B [Microbulbifer sp. MBIC08245]
 gi|83017266|dbj|BAE53552.1| DNA gyrase B [Microbulbifer sp. MBIC08240]
 gi|142000958|dbj|BAF56100.1| DNA gyrase B [Microbulbifer variabilis]
          Length = 389

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 147/401 (36%), Positives = 222/401 (55%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           ++TY++SGGLHGVG+SVVNALS EL +T+ R   I  Q +  G+P +PLE      +  G
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSKELKLTIRRGGKIHEQTYHHGVPQAPLEVVGD-SDTTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F+P    F +   F    L K  +  ++L+  V+     ++   E       E + 
Sbjct: 60  TTVHFKPSEDTFSNI-EFHFDVLAKRLRELSFLNSGVRIVLKDERSGKE-------EVYE 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   +N++ I+  +      + G     VE A+ W +     I  Y N I 
Sbjct: 112 YEGGLSAFVEFLNQNKTPINKVLHFQSQREDGI---AVEVALQWNDSFQESIFCYTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLAGFRAALTRGLNSYIEREGLGKKDKVNTTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  +   F  YL++NP EA  ++  +I+ ++ R   RK R    R
Sbjct: 229 QTKDKLVSSEVKPAVEQEMGHHFTDYLMENPQEAKSVVTKMIDAAKAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC Q     +E+++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQQKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++ ++  L+ ALGC   +S++  + LRY  +II
Sbjct: 349 KARFDKMLSSAEVGTLITALGCGIGKSEFNPDKLRYHSIII 389


>gi|295388370|gb|ADG03080.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 150/404 (37%), Positives = 230/404 (56%), Gaps = 15/404 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+I F P  + F +   F    L K  +  ++L+  V      ++E        +++ F
Sbjct: 60  GTQIRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KQDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ ++Q    N++ I  +IF    E++     +VE A+ W +     I  + N I
Sbjct: 113 MYEGGIQAFVQHLNTNKTPIIEKIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+
Sbjct: 171 PQRDGGTHLAGFRAALTRTLNSFMDKEDFSKKAKTATSGDDAREGLTAVVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE+A+ +    +LV+NP EA  +   +I+ +  R   RK R    
Sbjct: 231 SQTKDKLVSSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|83017259|dbj|BAE53549.1| DNA gyrase B [Microbulbifer sp. MBIC08244]
 gi|83017264|dbj|BAE53551.1| DNA gyrase B [Microbulbifer sp. MBIC04024]
 gi|142000945|dbj|BAF56096.1| DNA gyrase B [Microbulbifer variabilis]
 gi|142000949|dbj|BAF56097.1| DNA gyrase B [Microbulbifer variabilis]
 gi|142000951|dbj|BAF56098.1| DNA gyrase B [Microbulbifer variabilis]
 gi|142000953|dbj|BAF56099.1| DNA gyrase B [Microbulbifer variabilis]
 gi|142000960|dbj|BAF56101.1| DNA gyrase B [Microbulbifer variabilis]
 gi|142000967|dbj|BAF56102.1| DNA gyrase B [Microbulbifer variabilis]
 gi|142000969|dbj|BAF56103.1| DNA gyrase B [Microbulbifer variabilis]
 gi|142000971|dbj|BAF56104.1| DNA gyrase B [Microbulbifer variabilis]
 gi|142000975|dbj|BAF56105.1| DNA gyrase B [Microbulbifer variabilis]
 gi|142000977|dbj|BAF56106.1| DNA gyrase B [Microbulbifer variabilis]
 gi|142000979|dbj|BAF56107.1| DNA gyrase B [Microbulbifer variabilis]
          Length = 389

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 146/401 (36%), Positives = 221/401 (55%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           ++TY++SGGLHGVG+SVVNALS EL + + R   I  Q +  G+P +PLE      +  G
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSKELKLIIRRGGKIHEQTYHHGVPQAPLEVVGD-SDTTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F+P    F +   F    L K  +  ++L+  V+     ++   E       E + 
Sbjct: 60  TTVHFKPSEDTFSNI-EFHFDVLAKRLRELSFLNSGVRIVLKDERSGKE-------EVYE 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   +N++ I+  +      + G     VE A+ W +     I  Y N I 
Sbjct: 112 YEGGLSAFVEFLNQNKTPINKVLHFQSQREDGI---AVEVALQWNDSFQESIFCYTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLAGFRAALTRGLNSYIEREGLGKKDKVNTTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  +   F  YL++NP EA  ++  +I+ ++ R   RK R    R
Sbjct: 229 QTKDKLVSSEVKPAVEQEMGHHFTDYLMENPQEAKSVVTKMIDAAKAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC Q     +E+++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQQKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++ ++  L+ ALGC   +S++  + LRY  +II
Sbjct: 349 KARFDKMLSSAEVGTLITALGCGIGKSEFNPDKLRYHSIII 389


>gi|87299380|dbj|BAE79512.1| gyrase B subunit [Terrimonas lutea]
          Length = 404

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 156/407 (38%), Positives = 214/407 (52%), Gaps = 13/407 (3%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+S VNALS  LHVTV R+  IF Q++  G+P   + +     +  GTR+ 
Sbjct: 1   KVSGGLHGVGVSCVNALSTRLHVTVQREGKIFEQEYHIGVPQYSVREIG-TSDVTGTRVH 59

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F PD  IF     ++   L    +  A+L+  V+   +  +E  E       + FY  GG
Sbjct: 60  FWPDGSIFTTTV-YNKDILEGRLRELAFLNRGVRIILTDLREKNEDG-TDYSKSFYSEGG 117

Query: 269 LKTYLQTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDE 326
           +  +++    N    +        E +       VE A+++ +   E   SY N I T E
Sbjct: 118 IVEFVEMLDTNAGRTTLIPKVISVEGRDEKTNVAVEVALSYNDSYSEHIYSYVNNINTIE 177

Query: 327 GGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH SG R ALTR  K Y +      K  + I  DD       I+SV + EP+F GQTK
Sbjct: 178 GGTHVSGFRRALTRVFKSYGDKNGLFEKAKVEIEGDDFREGLSAIISVKVPEPQFEGQTK 237

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTA 443
           TKL + +    V++ +    + YL +NP EA  ++  VI         R+ +  V RKT 
Sbjct: 238 TKLGNNEVTGVVDSTVSKVLEAYLEENPKEAKNIVAKVILAAQARAAARKARELVQRKTV 297

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADCS       ELF+VEGDSAGG+AKQ R+RS QA+LPLRGKILNV  A 
Sbjct: 298 LTGGGLPGKLADCSDRDPDRCELFLVEGDSAGGTAKQGRDRSFQAILPLRGKILNVEKAM 357

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDAD 545
             KI  N++I ++  ALG    +    +      LRY K+IIMTDAD
Sbjct: 358 EHKIYENEEIRNMYTALGVTVGTPEDPKALNLAKLRYHKLIIMTDAD 404


>gi|188529793|gb|ACD62582.1| GyrB [Micromonospora sp. 20]
          Length = 393

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 121/399 (30%), Positives = 205/399 (51%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V + +   ++ Q+++   P    +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQRYNHSKPTPLEK--GEATDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PDP +F     FD   + +  Q  A+L+  +      D+   ++ G   +  F 
Sbjct: 59  SAVSFWPDPDVFETV-DFDFQTIYRRLQEMAFLTRGLTIHLLDDRVPEDEEGKTREVTFR 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    +++ I   +     E+ G    + E A+ W E     + ++ N + 
Sbjct: 118 YDGGIADFVRHLNASKNPIHKTVVEFGAEETG---MSAEIAMQWNESYGESVYTFANNVN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISI-ISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +       +D+      I+SV + +P+F GQ
Sbjct: 175 THEGGTHEEGFRAALTSVVNRYGAEKKLLKGDERLSGEDIREGLAAIISVKLTDPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    +    +  +NP EA  +++            ++ ++   RK
Sbjct: 235 TKTKLGNTPVKGFVQRVCNESLVDWFDRNPAEAKIIIQKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY K+++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDIEKLRYHKIVL 393


>gi|308153102|dbj|BAJ22140.1| DNA gyrase subunit B [Actinosynnema mirum]
          Length = 402

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 136/407 (33%), Positives = 218/407 (53%), Gaps = 18/407 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y +SGGLHGVGISVVNALS  + V V RQ   ++Q+F    P   L++        GT 
Sbjct: 1   SYAVSGGLHGVGISVVNALSTAVDVEVKRQGFTWNQRFEASKPAHELQRGVPTSE-TGTT 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------EIAEKYGI 257
           ITF  DP IF     ++   + +  Q  A+L+  +      ++         +       
Sbjct: 60  ITFWADPTIFETT-DYNIETISRRLQEMAFLNKGLSIVLRDERVAEEGAEEADAEGHVAK 118

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
             +  F++PGGL+ +++     R  +  ++ + + +        VE A+ W     P + 
Sbjct: 119 VRERVFHYPGGLEDFVRHLNHTREAVHQKVVSFEAKGDD---LEVEVAMQWNTGYTPSVY 175

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
           ++ NTI T EGGTHE G R ALTR + +YA   +   ++  ++  DD+      I+SV +
Sbjct: 176 TFANTINTHEGGTHEEGFRAALTRVVNEYARDKKLIKEKDANLTGDDIREGLAAIISVKL 235

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
           +EP+F GQTKTKL + +A+  V+ +  +    +  ++P EA  ++   +  S+ R+  RK
Sbjct: 236 KEPQFEGQTKTKLGNSEAKSFVQKSTNEHLADWFERHPNEAKTIITKAVSSSQARIAARK 295

Query: 435 QRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            RE V RK A+    LPGKL DC  +     E++IVEGDSAGGSAK+ R+   QA+LP+R
Sbjct: 296 ARELVRRKGALDIGGLPGKLKDCRSSNPEECEVYIVEGDSAGGSAKEGRDSMYQAILPIR 355

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           GKI+NV  A  +++  N ++  ++ A+G     ++    LRY KV++
Sbjct: 356 GKIINVEKARIDRVLKNTEVQSIITAMGTGIHDEFDVSKLRYHKVVL 402


>gi|6729190|dbj|BAA89728.1| DNA gyrase subunit B [Micromonospora echinospora]
          Length = 392

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 126/399 (31%), Positives = 206/399 (51%), Gaps = 10/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V + +   ++ Q++    P    +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQQYLASKPDPLDK--GETTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PDP +F     FD   + +  Q  A+L+  +      ++   E+     +  F 
Sbjct: 59  SAVSFWPDPDVFETV-DFDFQTIYRRLQEMAFLNRGLTIHLLDERATDEEG-KAREVTFC 116

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    +++ I   +     E++G    +VE A+ W E     + ++ NTI 
Sbjct: 117 YKGGISDFVRHLNASKNPIHKTVVEFGGEEEG---MSVEIAMQWNESYGESVYTFANTIN 173

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + KY    +  K    +  +D+      I+SV +  P+F GQ
Sbjct: 174 THEGGTHEEGFRAALTTLVNKYGTEKKLLKADEKLSGEDIREGLAAIISVKLANPQFEGQ 233

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    +    +  +NP EA  ++ +           ++ ++   RK
Sbjct: 234 TKTKLGNTPVKSFVQRVCNEWLVDWFDRNPAEAKVIITKASQAARARIAAQQARKLARRK 293

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 294 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 353

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY KV++
Sbjct: 354 ARIDRVLKNNEVQALITALGTGIHDDFDMEKLRYHKVVL 392


>gi|295388384|gb|ADG03087.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 148/404 (36%), Positives = 230/404 (56%), Gaps = 15/404 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+I F P  + F +   F    L K  +  ++L+  V      ++E        +++ F
Sbjct: 60  GTQIRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KQDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ ++Q    N++ I  +IF    E++     +VE A+ W +     I  + N I
Sbjct: 113 MYEGGIQAFVQHLNTNKTPIIEKIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  + +      K   +   DD       +++V + +P+F+
Sbjct: 171 PQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVTVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
            QTK KLVS + +  VE+A+ +    +LV+NP EA  +   +I+ +  R   RK RE+ R
Sbjct: 231 SQTKDKLVSSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTR 290

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +        LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGAPDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|110612657|gb|ABG78291.1| GyrB [uncultured bacterium]
          Length = 397

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 146/409 (35%), Positives = 232/409 (56%), Gaps = 17/409 (4%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD+++Y++SGGLHGVGISVVNALS ELH+ + R   ++ Q +  G+PL+PL     V++ 
Sbjct: 1   FDDNSYKVSGGLHGVGISVVNALSAELHLAIRRNGHLYEQDYRDGVPLAPLAITGNVQD- 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT + F+P P  F +   F    L K  +  ++L+  V+     ++         +++ 
Sbjct: 60  TGTEVWFKPSPATFTNIV-FHYDVLAKRLRELSFLNSGVRIHLFDER-------TEKQDT 111

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           F + GG+K +++    N++ I   +F+    +       VE +I W +     +  + N 
Sbjct: 112 FEYVGGIKAFVEHLNRNKTPIIPMVFSVNGVRDNI---GVELSIQWNDSFQENVFCFTNN 168

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R  LTR +  Y E     +        DD+      +LSV + +P+F
Sbjct: 169 IPQRDGGTHLAGFRAGLTRTLNNYIEKEGLAKKAKIVTTGDDIREGLTAVLSVKVPDPKF 228

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REV 438
           + QTK KLVS + +  VE+ + + F+ +L++NP  A  ++  + + +  R   R+    V
Sbjct: 229 SSQTKDKLVSSEVKSAVESLVAEKFNDFLLENPSAAKTIVGKIFDAARARDAARRAREMV 288

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKILN
Sbjct: 289 RRKGALDIAGLPGKLADCQEKDPALSEIYIVEGDSAGGSAKQGRDRKFQAILPLKGKILN 348

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADV 546
           V  A  +K+ ++Q++  L+ ALGC     +Y  + +RY ++IIMTDADV
Sbjct: 349 VEKARFDKMLSSQEVATLITALGCGIGPEEYDPDKVRYHRIIIMTDADV 397


>gi|6729219|dbj|BAA89731.1| DNA gyrase subunit B [Micromonospora halophytica]
          Length = 393

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 122/399 (30%), Positives = 207/399 (51%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS ++ V + +   ++ Q++    P +  +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTKMAVEIHKSGFVWRQQYHHSKPTALEK--GESTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PDP +F     FD   + +  Q  A+L+  +      ++    + G   +  F 
Sbjct: 59  SAVSFWPDPDVFETV-DFDFQTIYRRLQEMAFLTRGLTIHLLDERVPEGEEGKLREVTFR 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    +++ I   +     E++G    ++E A+ W E     + ++ N I 
Sbjct: 118 YDGGIADFVRHLNASKNPIHKTVVEFGAEEEG---MSLEIAMQWNESYGESVYTFANNIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQ
Sbjct: 175 THEGGTHEEGFRSALTSVVNRYGAEKKLLKGDEKLSGEDIREGLAAIISVKLTNPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    D    +  +NP EA  +++            ++ ++   RK
Sbjct: 235 TKTKLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKMIIQKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY K+++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDIEKLRYHKIVL 393


>gi|307939296|gb|ADN95839.1| DNA gyrase B [Hymenobacter antarcticus]
          Length = 422

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 158/428 (36%), Positives = 237/428 (55%), Gaps = 27/428 (6%)

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           +T L AGGKFD  +Y++SGGLHGVG+S VNALS +L VTV R    + Q++  GIP   +
Sbjct: 1   MTVLXAGGKFDKGSYKVSGGLHGVGVSCVNALSTDLKVTVRRNGHKYEQEYKIGIPQYDV 60

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           ++   +  + GT + F PD  IF +   +    +    +  +YL+  ++   +  +E  E
Sbjct: 61  KEVG-LSEEHGTEVQFLPDASIFTE-TEYRYDTVAGRLRDLSYLNKGIRITLTDRREKLE 118

Query: 254 KYGIPEKEEFYFPGGLKTYLQT-KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
             G+   EEFY  GGL+ ++Q    E R  + SE    ++EK GT    VE A+ +    
Sbjct: 119 -GGVFRGEEFYSTGGLRDFVQYLDGEQRPSLLSEPIYVESEKGGTP---VEVALQYNTSY 174

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGI 369
              + SY N I T EGGTH +G R A+TR +K Y +  +   K  + I  DD       +
Sbjct: 175 QENVYSYVNNINTIEGGTHVAGFRSAVTRVLKTYGDKNKLFEKAKVEITGDDFREGLTAV 234

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           +SV ++EP+F GQTKTKL + +    V + + +    YL +NP +A +++E VI  ++ R
Sbjct: 235 ISVKVQEPQFEGQTKTKLGNSEVSGAVNSVVGEILTQYLDENPNQANRIMEKVILAAKAR 294

Query: 430 LRRRKQREVNRKTAIRKLRL-PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
           +  RK +++ ++  +      PGKLADCS++     EL++VEGDSAGG+AKQ RNR+ QA
Sbjct: 295 IAARKAKDMVQRKGVLSSNSLPGKLADCSESDPEICELYLVEGDSAGGTAKQGRNRAFQA 354

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY----------------REED 532
           +LPLRGKILNV  A   +I  N++I +++ ALG     +                     
Sbjct: 355 ILPLRGKILNVEKAQEHRILENEEIKNMITALGVTFNERKSLAFTTDDDGTESGPLNFSK 414

Query: 533 LRYEKVII 540
           LRY KVII
Sbjct: 415 LRYHKVII 422


>gi|66474499|gb|AAY46819.1| GyrB [Aeromonas caviae]
          Length = 385

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 145/396 (36%), Positives = 222/396 (56%), Gaps = 16/396 (4%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           G+FD+++Y++SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++     
Sbjct: 1   GEFDDNSYKVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST 60

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
              GT + F P P IF D   F    L K  +  ++L+  V      +++  E       
Sbjct: 61  G-TGTEVRFWPSPTIFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE------- 111

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
             F + GG+K +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + 
Sbjct: 112 AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFT 168

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH  G R ALTR +  Y +      K   +   D +    + ++SV + +P
Sbjct: 169 NNIPQRDGGTHLVGFRTALTRTLNNYMDKEDYSKKAKSAASGDHVREGLIAVISVKVPDP 228

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F+ QTK KLVS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE
Sbjct: 229 KFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARE 288

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKI
Sbjct: 289 LTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKI 348

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           LNV  A  +K+ ++Q++  L+ ALGC         D
Sbjct: 349 LNVEKARFDKMISSQEVGTLITALGCGIGRDEYNPD 384


>gi|188529805|gb|ACD62588.1| GyrB [Micromonospora sp. 74]
          Length = 393

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 124/399 (31%), Positives = 206/399 (51%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V + +   ++ Q++    P    +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKSGFVWRQQYHNSKPDPLEK--GETTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PDP +F     FD   + +  Q  A+L+  +      ++    + G P +  FY
Sbjct: 59  SAVSFWPDPDVFETT-DFDFQTIYRRLQEMAFLNRALSIHLLDERVAEGEEGKPREVTFY 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    +++ +   +     E++G    +VE  + W E     + ++ NTI 
Sbjct: 118 YEGGIADFVRHLNASKNPMHKTVVEFAAEEEG---MSVEIVMQWNESYGESVYTFANTIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTH  G R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQ
Sbjct: 175 THEGGTHGEGFRAALTSVVNRYGADKKLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    D    +  +NP EA  +++            ++ ++   RK
Sbjct: 235 TKTKLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKTIIQKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY KV++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDMEKLRYHKVVL 393


>gi|126035344|gb|ABN72425.1| gyrase B subunit [Shigella sonnei]
          Length = 383

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 143/394 (36%), Positives = 218/394 (55%), Gaps = 16/394 (4%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + F P
Sbjct: 1   GGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F+   L K  +  ++L+  V       ++  E       + F++ GG+K 
Sbjct: 60  SLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKA 112

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH
Sbjct: 113 FVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTH 169

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLV
Sbjct: 170 LAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLV 229

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447
           S + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+   
Sbjct: 230 SSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLA 289

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+
Sbjct: 290 GLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 349

Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 350 LSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 383


>gi|254169589|gb|ACT64885.1| DNA gyrase B subunit [Shewanella sp. 20-23R]
          Length = 390

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 144/401 (35%), Positives = 226/401 (56%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS++L +T+ R   ++ Q +  G P  P+++  +     G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLQLTIRRDGKVYEQFYKHGEPQEPIKEIGEATK-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I F P  + F D   F    L K  +  ++L+  V      +++  +       E F+
Sbjct: 60  TEIRFWPSHETFTDT-EFHYELLAKRIRELSFLNSGVGIRLIDERDNKD-------EFFH 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++    N++ ++ ++F    E++     TVE A+ W +     I  + N I 
Sbjct: 112 YEGGIKAFVEYLNRNKTPVNKDVFHFSQERED--GITVEVAMQWNDGFQESIFCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  Y E      K   +   DD       ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAALTRNLNNYMENEGFNKKGKTNATGDDACEGLTAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +  + YL++NP +A  ++  +I+ +  R   RK R    R
Sbjct: 230 QTKDKLVSSEVKGAVEQTMAEKLNDYLLENPADAKMIVGKIIDAARAREAARKAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  E  RY  +II
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYDPEKTRYHYIII 390


>gi|15530010|gb|AAL01493.1| gyrase B [Shewanella sp. 184]
          Length = 393

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 144/404 (35%), Positives = 225/404 (55%), Gaps = 16/404 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS +L +T+ R   +  Q ++ G+P +P+++        
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSKKLQLTIRRDGKVHEQFYTHGVPDAPIKEIGDATK-T 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT I F P  + F D   F    L K  +  ++L+  V      +++        + E F
Sbjct: 60  GTEIRFWPSEQTFSDV-EFHFEILAKRVRELSFLNSGVGIRLVDERDN-------KNEFF 111

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG+  ++     N++ ++ ++F    E+      TVE A+ W +     I  + N I
Sbjct: 112 KYEGGISAFVDYLNRNKTPVNKDVFHFMQERDD--GITVEVAMQWNDGYQENIFCFTNNI 169

Query: 323 LTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  Y E      K   +   DD       ++SV + +P+F+
Sbjct: 170 PQRDGGTHLAGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKFS 229

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE  + +  + YL++NP +A  ++  +++ +  R   RK R    
Sbjct: 230 SQTKDKLVSSEVKAAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTR 289

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 290 RKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 349

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
             A  +K+ ++Q++  L+ ALGC   R +Y  +  RY  +IIMT
Sbjct: 350 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKTRYHNIIIMT 393


>gi|60459508|gb|AAX20090.1| DNA gyrase subunit B [Leptospira kirschneri serovar Cynopteri]
          Length = 140

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 72/136 (52%), Positives = 101/136 (74%), Gaps = 1/136 (0%)

Query: 56  EPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRG 115
           E VR RPGMYIG  DE  LH +  EV+DN++DE +AG+   I++S+  +  + V DNGRG
Sbjct: 4   EAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEIKISILPDNIVEVKDNGRG 63

Query: 116 IPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR 175
           IPV+ HP     ST+E+++T LHAGGKF+N  Y++SGGLHGVG+SVVNALS+ L V V +
Sbjct: 64  IPVDIHP-DKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYLEVEVHQ 122

Query: 176 QNTIFSQKFSRGIPLS 191
           +  I++QK+ +G+P+S
Sbjct: 123 KGKIYTQKYEKGVPVS 138


>gi|288871345|ref|ZP_06410122.1| DNA gyrase, B subunit [Clostridium hathewayi DSM 13479]
 gi|288863831|gb|EFC96129.1| DNA gyrase, B subunit [Clostridium hathewayi DSM 13479]
          Length = 175

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 69/184 (37%), Positives = 101/184 (54%), Gaps = 14/184 (7%)

Query: 508 RNNQQIMDLVQALGCR----TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
             N +I  ++ A GC       + +    LRY K+I+MTDADVDG+HI +LLLTF Y+ M
Sbjct: 1   MANAEIKTMINAFGCGFSEGYGNDFDITKLRYHKIILMTDADVDGSHIDTLLLTFLYRFM 60

Query: 564 YDLIEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
            +LI   H+F+  PPLF++  +  +  Y +DE+     LE ++K   G   + R+KGLGE
Sbjct: 61  PELIYDGHVFIAMPPLFKVIPKRGEEQYLYDEKE----LERYRKTHTGDFTLQRYKGLGE 116

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
           M A QL ET +D   R L +VEI     + + T+     LMG+    R +FI E A   +
Sbjct: 117 MDAQQLWETTLDPEHRVLKQVEIEDARMASEITE----MLMGSDVPPRRQFIYEHADEAE 172

Query: 683 DVGT 686
            +  
Sbjct: 173 -IDA 175


>gi|6729263|dbj|BAA89753.1| DNA gyrase subunit B [Mycobacterium scrofulaceum]
          Length = 421

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 139/427 (32%), Positives = 215/427 (50%), Gaps = 35/427 (8%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
            +NS Y +SGGLHGVG+SVVNALS  L VT+ R    + Q + R +P +   K+ +   K
Sbjct: 1   GENSGYTVSGGLHGVGVSVVNALSTRLEVTIKRDGHEWFQYYDRAVPGTL--KQGEATKK 58

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-------- 254
            GT I F  DP+IF     +D   + +  Q  A+L+  +    + ++   ++        
Sbjct: 59  TGTTIRFWADPEIFETT-QYDFETVARRLQEMAFLNKGLTINLTDERVEQDEVVDEVVSD 117

Query: 255 -----------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                                +   F++PGGL  +++     +S I   +     +  G 
Sbjct: 118 TAEAPKSAEEKAAESTAPHKVKHRTFHYPGGLVDFVKHINRTKSPIQQSVIDFDGKGTGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRA 354
               VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +     + 
Sbjct: 178 ---EVEIAMQWNGGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
            ++  DD+      ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP E
Sbjct: 235 PNLTGDDIREGLAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPSE 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDS
Sbjct: 295 AKTVVNKAVSSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    L
Sbjct: 355 AGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDITKL 414

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 415 RYHKIVL 421


>gi|211927071|dbj|BAG82788.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 419

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 131/424 (30%), Positives = 210/424 (49%), Gaps = 35/424 (8%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y++SGGLHGVG+SVVNALS  L   + +    + Q + + +P    +   +  +K GT
Sbjct: 2   GAYQVSGGLHGVGVSVVNALSTRLEADIYKDGHQWFQTYDKSVPGQLRK--GEPTDKTGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY---------- 255
            I F  DP IF     +D   + +  Q  A+L+  +    + ++  +E            
Sbjct: 60  TIRFWADPDIFETTT-YDFETIARRLQEMAFLNKGLTIELTDERVSSEDVVDDVVSDQAE 118

Query: 256 ---------------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                             +   F++PGGL  +++     ++ I   +     + +G    
Sbjct: 119 APKSAEEKAAEASAPHKVKHRVFHYPGGLVDFVKHINRTKTPIQPSVIDFDGKGEGH--- 175

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISI 357
            VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +     +  ++
Sbjct: 176 EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKDKDPNL 235

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP EA  
Sbjct: 236 TGDDIREGLAAVISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEQLTHWFESNPAEAKT 295

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGG
Sbjct: 296 VINKAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPTKSELYVVEGDSAGG 355

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY 
Sbjct: 356 SAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDISKLRYH 415

Query: 537 KVII 540
           K+++
Sbjct: 416 KIVL 419


>gi|164608610|gb|ABY62596.1| DNA gyrase beta subunit [Aliivibrio sp. ATCC 33715]
 gi|164608612|gb|ABY62597.1| DNA gyrase beta subunit [Vibrio sp. cann.1.1]
 gi|164608614|gb|ABY62598.1| DNA gyrase beta subunit [Vibrio sp. cann.1.2]
 gi|164608616|gb|ABY62599.1| DNA gyrase beta subunit [Vibrio sp. cann.1.3]
 gi|164608618|gb|ABY62600.1| DNA gyrase beta subunit [Vibrio sp. cann.1.4]
 gi|164608620|gb|ABY62601.1| DNA gyrase beta subunit [Vibrio sp. cann.2.1]
 gi|164608622|gb|ABY62602.1| DNA gyrase beta subunit [Vibrio sp. cann.2.2]
 gi|164608624|gb|ABY62603.1| DNA gyrase beta subunit [Vibrio sp. cann.2.3]
 gi|164608626|gb|ABY62604.1| DNA gyrase beta subunit [Vibrio sp. cann.2.4]
 gi|164608628|gb|ABY62605.1| DNA gyrase beta subunit [Vibrio sp. cann.2.5]
 gi|164608630|gb|ABY62606.1| DNA gyrase beta subunit [Vibrio sp. cann.2.6]
          Length = 402

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 150/411 (36%), Positives = 221/411 (53%), Gaps = 14/411 (3%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R+  IF Q +  G P +PL     
Sbjct: 1   AGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIHRKGEIFQQTYCHGEPQAPLAVVGT 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
                     +  D         F    L K  +  ++L+  V       +E        
Sbjct: 61  TDTTGTKIRFWPSDQT--FTNVEFVYDILAKRLRELSFLNSGVSIILQDMRE------ED 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F F GG++ ++     N++ +  +IF    E+K      VE A+ W +     I  
Sbjct: 113 KSDHFMFEGGIQAFVTHLNRNKTPVHQKIFYFDAERK-EDGIVVEVAMQWNDSYQENIFC 171

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           Y N I   +GG H SG R ALTR +  + +      K   S   DD       ++SV + 
Sbjct: 172 YTNNIPQRDGGAHLSGFRSALTRTLNTFMDKEGFSKKAKSSASGDDAREGLTAVVSVKVP 231

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRK 434
           +P+F+ QTK KLVS + +  VE+A+ +    +L +NP EA  +   +I+        R+ 
Sbjct: 232 DPKFSSQTKDKLVSSEVKSAVESAMNEKLAEFLAENPGEAKMVCSKIIDAARAREAARKA 291

Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 292 REMTRRKGALDIAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 351

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           KILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDA
Sbjct: 352 KILNVEKARFDKMISSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMTDA 402


>gi|32364164|gb|AAP80230.1| GyrB [Bisgaard Taxon 17]
          Length = 382

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 149/394 (37%), Positives = 222/394 (56%), Gaps = 17/394 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALSD+L +T+ RQ  +  Q +  G P +PL          GT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQAPLTIIGNT-ETSGTT 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F P P IF     FD   L K  +  ++L+  V       ++  E       + F++ 
Sbjct: 60  VRFWPSPDIFA-ITTFDYKILAKRLRELSFLNSGVSIRLVDKRDGTE-------DHFHYE 111

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTD 325
           GG++ +++   +N++ I  + F    EK G     VE A+ W +  N  +  + N I   
Sbjct: 112 GGIQAFVEYLNKNKNPIHPKPFYFTAEKDGI---GVEVALQWNDGVNENVYCFTNNIPQR 168

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R ALTR +  Y E      K  +S   DD     V I+SV + +P+F+ QT
Sbjct: 169 DGGTHLAGFRGALTRSLNSYMENEGLLKKEKVSTSGDDAREGLVAIISVKVPDPKFSSQT 228

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKT 442
           K KLVS + +  VE+A+ +    YL++NP +A  ++  +++ S  R   RK RE+  RK 
Sbjct: 229 KDKLVSSEVKSAVESAMNEKMQEYLLENPADAKIIVNQIMDGSTCREAARKAREMTRRKG 288

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +EL++VEGDSAGGSAK  R+R  QA+LPL+GKILNV  A
Sbjct: 289 ALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKA 348

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRY 535
             +K+ ++Q++  L+ ALGC   R +Y  + LRY
Sbjct: 349 RFDKMLSSQEVGTLITALGCGIGRDEYNPDKLRY 382


>gi|51571545|emb|CAH18939.1| gyrase B [Corallococcus coralloides]
          Length = 392

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 140/404 (34%), Positives = 214/404 (52%), Gaps = 17/404 (4%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y++SGGLHGVG++ VN LS+   V V R   ++ Q ++RG+     ++     +KRGT
Sbjct: 1   GAYKVSGGLHGVGVTCVNFLSEWFKVRVQRDGKVYEQSYARGVSNGSPQEVG-TTDKRGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            I F+PDP +      F+   L +  +  A+L+  +      ++   E         F F
Sbjct: 60  LIHFKPDPTVMETV-DFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD-------FKF 111

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG+ ++++   + +  +  +    K+E++G    ++E A+ W +     I ++ N I T
Sbjct: 112 DGGISSFVEYLNKAKEALHDKPVFIKSEREGV---SLEIAMQWNDGYDERIFTFANNINT 168

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQ 382
            EGG+H SG + ALTR +  YAE     + +      +D       ++SV +  P+F GQ
Sbjct: 169 HEGGSHLSGFKAALTRTLNSYAEKGGLWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQ 228

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRK 441
           TKTKL +   +  VE  + D    +L +NP  A K++  +          R+ +  V RK
Sbjct: 229 TKTKLGNSVVKGLVEQMVNDQLASFLEENPPLAKKVVVKIGDACRARIAARKARETVRRK 288

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC     H +EL+IVEGDSAGGSAKQ R+R NQA+LPLRGKILNV  
Sbjct: 289 GVLDGGGLPGKLADCQSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEK 348

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           A  EK+  + +I+ L+ ALG       Y  E  RY ++I+MTDA
Sbjct: 349 ARFEKMLTSAEIVTLITALGTGIGAEDYDPEKARYHRIILMTDA 392


>gi|161085584|dbj|BAF93879.1| DNA gyrase B [Sporosarcina sp. YM9-101]
          Length = 391

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 132/400 (33%), Positives = 206/400 (51%), Gaps = 13/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS+   V+V     +   +F RG     L    +     G
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSETTEVSVRLNGQVHFIEFKRGDVQKELSVIGETEE-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I F+ D +IF +   ++   L    +  AYL+  +    + ++           + ++
Sbjct: 60  TTIRFKADAEIFTETTVYEYEILANRLRELAYLNRGLMVTITDER-----GEENRTDVYH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K+Y++   +N+  I  E    + EK G    ++E A+ +       + S+ N I 
Sbjct: 115 YEGGIKSYVEHLNKNKEPIHEEPIFIEGEKDGI---SIEIAMQYNSGYAENLFSFANNIN 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHESG + ALTR I  Y+      +    ++  DD+      I+S+   +P+F G
Sbjct: 172 TYEGGTHESGFKTALTRIINDYSRKNGVLKEADPNLSGDDVREGLTAIISIKHPDPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNR 440
           QTKTKL + +      +   + F  +L++NP  A K+++  ++        +  +    R
Sbjct: 232 QTKTKLGNSEVSTITNSLFSEGFQRFLLENPSTARKIIDKSLMAARARLAAKNAREFTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+ +    LPGKLADCS      +EL+IVEGDSAGGSAK  R+R  QA+LPLRGKILNV 
Sbjct: 292 KSVLEVSSLPGKLADCSSRDPGISELYIVEGDSAGGSAKMGRDRHFQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  ++I  N +I  ++ ALG     ++     RY K++I
Sbjct: 352 KARLDRILGNLEIRAMITALGTGIGEEFNLSKARYHKLVI 391


>gi|126035280|gb|ABN72393.1| gyrase B subunit [Salmonella enterica]
          Length = 380

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 142/390 (36%), Positives = 215/390 (55%), Gaps = 16/390 (4%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS +L + + R   I  Q +  G+P +PL       +K GT + F P
Sbjct: 1   GGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F+   L K  +  ++L+  V       ++  E       + F++ GG+K 
Sbjct: 60  SHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKA 112

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH
Sbjct: 113 FVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTH 169

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLV
Sbjct: 170 LAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLV 229

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447
           S + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+   
Sbjct: 230 SSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLA 289

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+
Sbjct: 290 GLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 349

Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYE 536
            ++Q++  L+ ALGC   R +Y  + LRY 
Sbjct: 350 LSSQEVATLITALGCGIGRDEYNPDKLRYH 379


>gi|148470280|gb|ABQ66087.1| gyrase b [uncultured bacterium]
          Length = 432

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 164/438 (37%), Positives = 231/438 (52%), Gaps = 23/438 (5%)

Query: 131 EIILTTLHAGGKFDNST----YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           E+I+T LHAGGKFD  +    Y  SGGLHGVG+SV NALS  L VTV R+  +    F  
Sbjct: 1   EVIMTVLHAGGKFDKKSGQGAYAFSGGLHGVGVSVTNALSRRLEVTVKREGKVHFMTFGD 60

Query: 187 GIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
           G  + PL  +        GTR+   PDP+ F +        L +  +SKA L   V    
Sbjct: 61  GFVIEPLAVQGTCGVRNTGTRVRVWPDPRYFDEPQINLIE-LERGLRSKAVLLPGVSV-- 117

Query: 246 SCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS----EIFTGKTEKKGTHRGT 301
              +   E  G   ++ +++PGGL+ YL  +L    L+      + F G  E      G 
Sbjct: 118 ---RLRKEGDGRTLEQTWHYPGGLEQYLTERLGEDPLLIPVFTGDRFFGVEEGDSFAPGE 174

Query: 302 -VEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISII 358
              WA +W E       S+ N I T  GGTHE+GLR  L   +K + E      R + + 
Sbjct: 175 GASWAFSWHETRSLQGESFVNLIPTPLGGTHEAGLRTGLFEALKSFIEHHGLLPRGVRLQ 234

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            +D+      ILS+ + +P+F GQT+ KL S +A + V   +RDPF+H+L Q+      L
Sbjct: 235 LEDVSARLQFILSIRMLDPQFQGQTEDKLTSREALKLVSTLVRDPFEHWLNQHVEHGKAL 294

Query: 419 LEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
            + VI ++  R++  ++ E  + + +  L  PGKL DC        ELF+VEGDSAGGSA
Sbjct: 295 ADLVIRQAMARMKSGQRIEKRKSSGVAVL--PGKLTDCESERIDERELFLVEGDSAGGSA 352

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL---RY 535
           K ARN+  QA+LPLRGK+LN       ++  N +I D+  ALG     +    DL   RY
Sbjct: 353 KMARNKLTQAILPLRGKVLNSFEVEQGRLFANTEIHDIAVALGIDPHGRGEPVDLSQRRY 412

Query: 536 EKVIIMTDADVDGAHIAS 553
           +++IIMTDADVDG+HI +
Sbjct: 413 DRIIIMTDADVDGSHIRT 430


>gi|163256313|dbj|BAF95667.1| DNA gyrase subunit B [Bradyrhizobium sp. KO3G]
          Length = 268

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 97/278 (34%), Positives = 149/278 (53%), Gaps = 11/278 (3%)

Query: 89  VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148
            +AG+A  ++V L+ +  +TV D+GRGIPV+ H K    S  E+I+T LHAGGKFD ++Y
Sbjct: 1   ALAGHATRVDVVLNADNSVTVRDDGRGIPVDIH-KGEGISAAEVIMTQLHAGGKFDQNSY 59

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS +L + + R +     +F+ G  ++PL+       +RGT +T
Sbjct: 60  KVSGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHGDAVAPLKVVGDAPGRRGTEVT 119

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F   P+ F +   +D A L    +  A+L+  V    S  +   EK      EE ++ GG
Sbjct: 120 FLASPETFKN-IEYDFATLEHRLRELAFLNSGVNIILSDMRHAVEKR-----EEMHYSGG 173

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEG 327
           ++ +++    N+  I       + +  G     VE A+ W +   E    + N I   +G
Sbjct: 174 VEEFVKYLDRNKKAIVPAPIMVRADANGI---GVEAALWWNDSYHENVLCFTNNIPQRDG 230

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
           GTH +G R ALTR +  YAE    K  I++  DD    
Sbjct: 231 GTHLAGFRGALTRQVNGYAEANAKKEKIALTGDDCREG 268


>gi|18147151|dbj|BAB83056.1| DNA gyrase subunit B [Alcanivorax sp. Nag1]
          Length = 389

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 153/401 (38%), Positives = 224/401 (55%), Gaps = 18/401 (4%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD++TY++SGGLHGVG+SVVNALS+EL +T+ R   +  Q ++ G+P  PLE      
Sbjct: 1   GKFDDNTYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYNHGVPAKPLEVVG-TT 59

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
           +  GT + FRP P+ F +   F    L K  +  ++L+  V+     ++   E       
Sbjct: 60  DSSGTAVHFRPSPETFSNI-KFHYDILAKRLRELSFLNSGVRIHLMDERSGDE------- 111

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
           + F + GGL  ++     N++ ++       + E+ G     VE A+ W +     I  +
Sbjct: 112 DVFEYEGGLSAFVSYLNTNKTPLNQVFHFNYEREEDGI---AVEVAMQWNDSYQENIFCF 168

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +G R ALTR +  Y +      K   S   DD       ++SV + +
Sbjct: 169 TNNIPQRDGGTHLAGFRAALTRTLNSYMDKEGFLKKEKASPSGDDAREGLTAVISVKVPD 228

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ- 435
           P+F+ QTK KLVS + +  VE  + D F  YL++NP EA  +++ +I+ +  R   RK  
Sbjct: 229 PKFSSQTKDKLVSSEVKSAVEQTMGDLFQDYLLENPGEARSIVQKIIDAARARDAARKAR 288

Query: 436 REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
               RK A+    LPGKLADC Q     +EL+IVEGDSAGGSAKQ R+R NQA+LPL+GK
Sbjct: 289 EMTRRKGALDIAGLPGKLADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPLKGK 348

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRY 535
           ILNV  A  +K+ ++Q++  L+ ALGC   R +Y  E LRY
Sbjct: 349 ILNVEKARFDKMLSSQEVGTLITALGCGIGRDEYNIEKLRY 389


>gi|295388284|gb|ADG03038.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 150/404 (37%), Positives = 230/404 (56%), Gaps = 15/404 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+I F P  + F +   F    L K  +  ++L+  V      ++E        +++ F
Sbjct: 60  GTQIRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KQDRF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ ++Q    N++ I  +IF    E++     +VE A+ W +     I  + N I
Sbjct: 113 MYEGGIQAFVQHLNTNKTPIIEKIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+
Sbjct: 171 SQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE+A+ +    +LV+NP EA  +   +I+ +  R   RK R    
Sbjct: 231 SQTKDKLVSSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|188529768|gb|ACD62570.1| GyrB [Micromonospora chalcea]
          Length = 393

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 122/399 (30%), Positives = 203/399 (50%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V + +   ++ Q++    P    +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQRYDHSKPTPLEK--GEETDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PDP +F     FD   + +  Q  A L+  +      ++   ++ G   +  F+
Sbjct: 59  SAVSFWPDPDVFETV-DFDFHTIYRRLQEMALLTRGLTIHLLDERVPEDEDGKTREVTFH 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    ++S I   +     E+ G    +VE A+ W E     + ++ N I 
Sbjct: 118 YEGGIADFVRHLNASKSPIHKTVVEFGAEETG---MSVEIAMQWNESYGESVYTFANNIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISI-ISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +       +D+      I+SV + +P+F GQ
Sbjct: 175 THEGGTHEEGFRAALTSVVNRYGADKKLLKGDERLSGEDIREGLAAIISVKLTDPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    +    +  +NP EA  +++            ++ ++   RK
Sbjct: 235 TKTKLGNTPVKGFVQRVCNESLVDWFDRNPAEAKIIIQKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A   ++  N ++  L+ ALG      +    LRY K+++
Sbjct: 355 ARIGRVLKNSEVQALITALGTGIHDDFDIGKLRYHKIVL 393


>gi|211927105|dbj|BAG82805.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 409

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 135/411 (32%), Positives = 208/411 (50%), Gaps = 17/411 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS ++ V V      ++Q +  G+P +PL + E      G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTKVAVEVKTDGHRWTQDYKLGVPTAPLAQNEATEE-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE-----------IAE 253
           T +TF  D  IF     +    L +  Q  A+L+  +    + ++E             +
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLTLTLTDERESARATAGADSAEEQ 118

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
                    +Y+ GG+  +++     +  +          +      +VE A+ W  +  
Sbjct: 119 DSDQARTVTYYYEGGIVDFVKYLNSRKGELIHPTVIDIEAEDKERMLSVEIAMQWNSQYT 178

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGIL 370
             + S+ NTI T EGGTHE G R ALT  + +YA   +   ++  ++  +D+      I+
Sbjct: 179 EGVYSFANTIHTHEGGTHEEGFRAALTGLVNRYARDKKLLREKDDNLSGEDIREGLTAII 238

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV + EP+F GQTKTKL + +A+  V+  + +    +  +NP EA  ++   I+    R+
Sbjct: 239 SVKLGEPQFEGQTKTKLGNTEAKTFVQKVVHEHLTDWFDRNPNEAADIVRKAIQAQTARV 298

Query: 431 RRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK R++ R+  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+
Sbjct: 299 AARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPMYQAI 358

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           LP+RGKILNV  A  +KI  N ++  L+ A G      +  E LRY K+I+
Sbjct: 359 LPIRGKILNVEKARIDKILQNTEVQALISAFGTGVHEDFDIEKLRYHKIIL 409


>gi|308152519|dbj|BAJ22238.1| DNA gyrase subunit B [Mycobacterium gordonae]
 gi|308152521|dbj|BAJ22239.1| DNA gyrase subunit B [Mycobacterium gordonae]
 gi|308152527|dbj|BAJ22242.1| DNA gyrase subunit B [Mycobacterium gordonae]
 gi|308152535|dbj|BAJ22246.1| DNA gyrase subunit B [Mycobacterium gordonae]
 gi|308152537|dbj|BAJ22247.1| DNA gyrase subunit B [Mycobacterium gordonae]
          Length = 421

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 138/427 (32%), Positives = 217/427 (50%), Gaps = 35/427 (8%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
            +NS Y +SGGLHGVG+SVVNALS  L V + R    +SQ + R +P +   K+ +   K
Sbjct: 1   GENSGYTVSGGLHGVGVSVVNALSTRLEVDIKRDGHEWSQYYERAVPGTL--KQGEATRK 58

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-------- 254
            GT I F  D +IF     +D   + +  Q  A+L+  +    + ++   ++        
Sbjct: 59  TGTTIRFWADSEIFETT-QYDFETVARRLQEMAFLNKGLTINLTDERVEQDEVVDEVVSD 117

Query: 255 -----------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                                ++  F++PGGL  +++     +S I   +   + +  G 
Sbjct: 118 TAEAPKSAEEKAAESKAPHKVKQRTFHYPGGLVDFVKHINRTKSPIQQSVIDFEGKGTGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRA 354
               VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +    ++ 
Sbjct: 178 ---EVEIAMQWNGGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKEKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
            ++  DD+      ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP E
Sbjct: 235 PNLTGDDIREGLAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPSE 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDS
Sbjct: 295 AKTVVNKAVSSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    L
Sbjct: 355 AGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDITKL 414

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 415 RYHKIVL 421


>gi|3985962|dbj|BAA34866.1| DNA gyrase subunit B protein [Nitrosospira multiformis ATCC 25196]
          Length = 389

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 145/401 (36%), Positives = 225/401 (56%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y++SGGLHGVG+SVVNALS+ L +++ R   I   +F  G+P+ PL    K   +RG
Sbjct: 1   SDSYKVSGGLHGVGVSVVNALSEWLRLSIRRDGKIHQIEFRMGVPVGPLATTGKT-ERRG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F    +IFGD   +      K  +  ++L+  VK      +   E       E F 
Sbjct: 60  TEVHFLASKEIFGDI-EYHYDIFAKRLRELSFLNNGVKIHLIDQRNAKE-------ETFA 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           F GG+K++++     +S++   IF    EK    R  VE ++ W +    ++  + N I 
Sbjct: 112 FVGGVKSFVEYVNRTKSVLHPNIFYAAGEKD---RIAVEVSMQWNDSYTEQVLCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +GLR A+TR +  Y E +    K  I    DD+      +LSV + EP+F+ 
Sbjct: 169 QKDGGTHLTGLRAAMTRTLNNYIEKSDLAKKAKIETSGDDMREGLSCVLSVKLFEPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK KLVS + +  VE  +      +L+++P++A  +   +IE +  R   RK RE+ R+
Sbjct: 229 QTKEKLVSSEVRPVVEEIVSLKLAEFLMEHPVDAKIICGKIIEAARAREAARKARELTRR 288

Query: 442 TA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
              +  + LPGKLADC +     +EL++VEGDSAGGSAKQ R+R  QA++PL+GKILNV 
Sbjct: 289 KGVLDGMGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q+I  L+ ALG    + +Y  + LRY ++II
Sbjct: 349 KARFDKLISSQEIASLITALGTGIGKDEYNPDKLRYHRIII 389


>gi|189397228|gb|ACD93410.1| DNA gyrase B subunit [Fusobacterium varium]
          Length = 391

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 144/401 (35%), Positives = 209/401 (52%), Gaps = 14/401 (3%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS    VTV     I+ QK++RG+P   +++        GT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSLWTDVTVKTDGKIWYQKYNRGVPEEDVKEIGVTTEH-GTTV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+ D +IF     +D   L    +  AYL+  ++   S  ++   K      EEF F G
Sbjct: 60  RFKADHEIFETLI-YDYNTLKNRLKELAYLNKGLEIHLSDSRKEPYKK-----EEFKFEG 113

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDE 326
           G+  +L+   E    +  E      E        V+ A  +   ++  I S+ N I T E
Sbjct: 114 GIVDFLKEITEETEKLIPEPIYMTGEVDNV---AVDIAFLYTVNQSEIIYSFVNNINTHE 170

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH SG R ALTR I    +      ++   +  +D+      I+SV + +P+F GQTK
Sbjct: 171 GGTHVSGFRTALTRVINDVGKAQGYLKEKDGKLQGNDIREGVTAIVSVKVPQPQFEGQTK 230

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA- 443
           TKL + +    V   +       L  NP +   ++E ++   + R   +K RE+  + + 
Sbjct: 231 TKLGNSEVTGIVSTLVGTNLKIVLEDNPNDTKIIIEKILNSKKAREAAQKARELVLRKSV 290

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADCS       E++IVEGDSAGGSAKQ R+RS+QA+LPLRGKILNV  AG
Sbjct: 291 LEVGSLPGKLADCSSKNPDECEIYIVEGDSAGGSAKQGRDRSHQAILPLRGKILNVEKAG 350

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
             K   N ++  ++ A G      +  E LRY K+I+MTDA
Sbjct: 351 LHKSLENNEVRAMITAFGTSIGDSFNIEKLRYGKIILMTDA 391


>gi|110612693|gb|ABG78309.1| GyrB [uncultured bacterium]
          Length = 399

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 144/411 (35%), Positives = 225/411 (54%), Gaps = 17/411 (4%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD+++Y++SGGLHGVG+SVVNALS+ LH+ + R+  +  Q ++ G PL+PL       
Sbjct: 1   GKFDDNSYKVSGGLHGVGVSVVNALSESLHLVIRREGKVHEQHYAHGEPLAPLAVTGAAT 60

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
                   +            F    L +  +  A+L+  V      ++         + 
Sbjct: 61  TTG--TQIWFKPSAATFTHIEFSYEILARRLRELAFLNSGVNILLKDERS-------DKS 111

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYC 319
           + F + GG+K +++     ++ +   IF+ + EK       +E A+ W +   E    + 
Sbjct: 112 DVFCYEGGIKAFVEYLNRTKTAMFPSIFSMQAEKDNV---GIELAMQWNDSYQENLLCFT 168

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH +G R ALTR +  Y E      K  ++   DD       +LSV + +P
Sbjct: 169 NNIPQRDGGTHLAGFRSALTRTLNNYIEQEGFAKKAKVTTTGDDAREGLTAVLSVKVHDP 228

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F+ QTK KLVS + +  VE+ + D  + +L++NP  A  ++  +I+ +  R   RK R+
Sbjct: 229 KFSSQTKDKLVSSEVKSAVESVVADKLNDFLLENPAIAKTIVGKMIDAARAREAARKARD 288

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ R+R  QA+LPL+GKI
Sbjct: 289 LTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRDRKFQAILPLKGKI 348

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADV 546
           LNV  A  +K+ ++Q++  L+ ALGC     +Y  + +RY ++IIMT+ADV
Sbjct: 349 LNVEKARFDKMLSSQEVATLITALGCGIGSDEYDPDKIRYHRIIIMTNADV 399


>gi|295442414|gb|ADG21186.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 149/404 (36%), Positives = 229/404 (56%), Gaps = 15/404 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++ GGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K 
Sbjct: 1   DDNSYKVLGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+I F P  + F +   F    L K  +  ++L+  V      ++E        +++ F
Sbjct: 60  GTQIRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KQDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ ++Q    N++ I  +IF    E++     +VE A+ W +     I  + N I
Sbjct: 113 MYEGGIQAFVQHLNTNKTPIIEKIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+
Sbjct: 171 PQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE+A+ +    +LV+NP EA  +   +I+ +  R   RK R    
Sbjct: 231 SQTKDKLVSSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|66474495|gb|AAY46817.1| GyrB [Aeromonas caviae]
 gi|66474523|gb|AAY46831.1| GyrB [Aeromonas hydrophila]
          Length = 385

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 146/396 (36%), Positives = 223/396 (56%), Gaps = 16/396 (4%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           G+FD+++Y++SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++     
Sbjct: 1   GEFDDNSYKVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST 60

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
              GT + F P P IF D   F    L K  +  ++L+  V      +++  E       
Sbjct: 61  G-TGTEVRFWPSPTIFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE------- 111

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
             F + GG+K +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + 
Sbjct: 112 AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFT 168

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH  G R ALTR +  Y +      K   +   DD+    + ++SV + +P
Sbjct: 169 NNIPQRDGGTHLVGFRTALTRTLNNYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDP 228

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F+ QTK KLVS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE
Sbjct: 229 KFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARE 288

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKI
Sbjct: 289 LTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKI 348

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           LNV  A  +K+ ++Q++  L+ ALGC         D
Sbjct: 349 LNVEKARFDKMISSQEVGTLITALGCGIGRDEYNPD 384


>gi|66474505|gb|AAY46822.1| GyrB [Aeromonas caviae]
          Length = 385

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 147/396 (37%), Positives = 223/396 (56%), Gaps = 16/396 (4%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           G+FD+++Y++SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++     
Sbjct: 1   GEFDDNSYKVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST 60

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
              GT + F P P IF D   F    L K  +  ++L+  V      +++  E       
Sbjct: 61  G-TGTEVRFWPSPTIFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE------- 111

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
             F + GG+K +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + 
Sbjct: 112 AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFT 168

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH  G R ALTR +  Y +      K   +   DD+    + ++SV + EP
Sbjct: 169 NNIPQRDGGTHLVGFRTALTRTLNNYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPEP 228

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F+ QTK KLVS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE
Sbjct: 229 KFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARE 288

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKI
Sbjct: 289 LTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKI 348

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           LNV  A  +K+ ++Q++  L+ ALGC         D
Sbjct: 349 LNVEKARFDKMISSQEVGTLITALGCGIGRDEYNPD 384


>gi|126035278|gb|ABN72392.1| gyrase B subunit [Salmonella enterica]
          Length = 379

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 143/390 (36%), Positives = 216/390 (55%), Gaps = 16/390 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P +PL       +K GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ GG+K
Sbjct: 60  PSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIK 112

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   +GGT
Sbjct: 113 AFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGT 169

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KL
Sbjct: 170 HLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKL 229

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRK 446
           VS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+  
Sbjct: 230 VSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDL 289

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 290 AGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 349

Query: 507 IRNNQQIMDLVQALGCRT-RSQYREEDLRY 535
           + ++Q++  L+ ALGC   R +Y  + LRY
Sbjct: 350 MLSSQEVATLITALGCGIGRDEYNPDKLRY 379


>gi|6729182|dbj|BAA89724.1| DNA gyrase subunit B [Micromonospora carbonacea]
          Length = 390

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 123/396 (31%), Positives = 206/396 (52%), Gaps = 9/396 (2%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y +SGGLHGVG+SVVNALS ++ V + +   ++ Q+++   P    +   +  ++ G+ +
Sbjct: 1   YAVSGGLHGVGVSVVNALSTKMAVEIHKSGFVWRQQYANSKPSPLEK--GETTDRTGSAV 58

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F PD  +F     FD   + +  Q  A+L+  +      ++    + G   +  F + G
Sbjct: 59  AFWPDADVFETV-DFDFQTIYRRLQEMAFLNRGLTIHLLDERVPEGEEGKTREVTFCYKG 117

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+  +++    +++ I   +     E++G    +VE A+ W E     + ++ NTI T E
Sbjct: 118 GIADFVRHLNASKTPIHKTVVEFGAEEEG---MSVEIAMQWNESYGESVYTFANTINTHE 174

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GGTHE G R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQTKT
Sbjct: 175 GGTHEEGFRAALTSVVNRYGADKKLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKT 234

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAI 444
           KL +   +  V+    +    +  +NP EA  ++ +           ++ ++   RK+ +
Sbjct: 235 KLGNTPVKSFVQRVCNEWLVDWFDRNPAEAKIIITKASQAARARIAAQQARKLARRKSLL 294

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  
Sbjct: 295 ESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARI 354

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +++  N ++  L+ ALG      +  E LRY KV++
Sbjct: 355 DRVLKNNEVQALITALGTGIHDDFDMEKLRYHKVVL 390


>gi|62085680|gb|AAX63232.1| DNA gyrase subunit B [Gordonia bronchialis DSM 43247]
          Length = 425

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 141/431 (32%), Positives = 213/431 (49%), Gaps = 37/431 (8%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+  Y +SGGLHGVGISVVNALS ++ + +      + Q +    P    +     
Sbjct: 1   GGKFDSDAYAVSGGLHGVGISVVNALSTKVELEINYGGFHWEQTYDHAKPQPLEK--GDA 58

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------- 249
             K GT + F PDP+IF     F A  + +  Q  A+L+  +    +  +          
Sbjct: 59  TRKTGTLVRFWPDPEIFETTV-FSAETVARRLQEMAFLNKGLTITLTDKRPRAVEAPPGD 117

Query: 250 -----------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
                            E  +    P+   +++P GL  Y++     +  I + +     
Sbjct: 118 ANGDESVADAAETVKTEEEKKADAKPKTRTYHYPDGLVDYIKHLNRTKQPIHNSVIGFTA 177

Query: 293 EKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ- 350
           +  G     VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   + 
Sbjct: 178 KGTGH---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKL 234

Query: 351 -NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
             ++   +  DD+      ++SV + +P+F GQTKTKL + + +  V+    +   H+  
Sbjct: 235 LKEKDGKLTGDDIREGLAAVISVKVGDPQFEGQTKTKLGNTEVKGFVQKTCNEHLAHWFE 294

Query: 410 QNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFI 468
            NP EA  +++  ++ S+ RL  RK RE V RKTA     LPGKLADC  N     E++I
Sbjct: 295 SNPAEAKIIIKKAVDSSQARLAARKARELVRRKTATDIGGLPGKLADCRSNDPSKCEVYI 354

Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528
           VEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++
Sbjct: 355 VEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEF 414

Query: 529 REEDLRYEKVI 539
               LRY K++
Sbjct: 415 DIAKLRYHKIV 425


>gi|308152507|dbj|BAJ22232.1| DNA gyrase subunit B [Mycobacterium neoaurum]
          Length = 419

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 132/424 (31%), Positives = 211/424 (49%), Gaps = 35/424 (8%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y++SGGLHGVG+SVVNALS  L   + +    + Q + R +P +  +   +   K GT
Sbjct: 2   GAYQVSGGLHGVGVSVVNALSTRLEADIHKDGFEWHQTYDRSVPGTLRK--GEPSKKTGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK----------- 254
            I F  DP IF     +D   + +  Q  A+L+  +    + ++   E+           
Sbjct: 60  TIRFWADPDIFETTT-YDFETIARRLQEMAFLNKGLTIELTDERVAPEEIVDEVVSDHAE 118

Query: 255 --------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                             +   F++PGGL  +++     ++ I   +   + +  G    
Sbjct: 119 APKSAEEKAAEHAAPQKVKHRVFHYPGGLVDFVKHINRTKTAIQPSVIDFEGKGPGH--- 175

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISI 357
            VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +    ++  ++
Sbjct: 176 EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDPNL 235

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP EA  
Sbjct: 236 TGDDIREGLAAVISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEELQHWFDANPAEAKT 295

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGG
Sbjct: 296 VVNKAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGG 355

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY 
Sbjct: 356 SAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDLAKLRYH 415

Query: 537 KVII 540
           K+++
Sbjct: 416 KIVL 419


>gi|295388312|gb|ADG03052.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 150/404 (37%), Positives = 230/404 (56%), Gaps = 15/404 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+I F P  + F +   F    L K  +  ++L+  V      ++E        +++ F
Sbjct: 60  GTQIRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KQDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ ++Q    N++ I  +IF    E++     +VE A+ W +     I  + N I
Sbjct: 113 MYEGGIQAFVQHLNTNKTPIIEKIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+
Sbjct: 171 PQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE+A+ +    +LV+NP EA  +   +I+ +  R   RK R    
Sbjct: 231 SQTKDKLVSSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 351 EKARFDKMSSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|90185708|emb|CAJ84448.1| gyrase B protein [Vibrio parahaemolyticus]
          Length = 393

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 149/403 (36%), Positives = 229/403 (56%), Gaps = 15/403 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+I F P  + F +   F    L K  +  ++L+  V      ++E        +++ F
Sbjct: 60  GTQIRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KQDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ ++Q    N++ I  +IF    E++     +VE A+ W +     I  + N I
Sbjct: 113 MYEGGIQAFVQHLNTNKTPIIEKIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+
Sbjct: 171 PQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE+A+ +    +LV+NP EA  +   +I+ +  R   RK R    
Sbjct: 231 SQTKDKLVSSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIM 541
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIM
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIM 393


>gi|147917481|gb|ABQ52593.1| gyrase B subunit [Vibrio alginolyticus]
          Length = 392

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 146/402 (36%), Positives = 227/402 (56%), Gaps = 15/402 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+I F P  + F +   F    L K  +  ++L+  V      ++E        + + F
Sbjct: 60  GTQIRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KHDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ ++     N++ I  +IF   +E++     +VE A+ W +     I  + N I
Sbjct: 113 MYEGGIQAFVDHLNTNKTPIIEKIFHFNSERED--GISVEVAMQWNDGFQENIFCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+
Sbjct: 171 PQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE+A+ +    +L++NP EA  +   +I+ +  R   RK R    
Sbjct: 231 SQTKDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIII 392


>gi|66474497|gb|AAY46818.1| GyrB [Aeromonas veronii bv. sobria]
          Length = 385

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 146/396 (36%), Positives = 222/396 (56%), Gaps = 16/396 (4%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           G+FD+++Y++SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++     
Sbjct: 1   GEFDDNSYKVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST 60

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
              GT + F P P IF D   F    L K  +  ++L+  V      +++  E       
Sbjct: 61  G-TGTEVRFWPSPTIFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE------- 111

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
             F + GG+K + +   +N++ I  ++F   TE+ G     VE A+ W +     +  + 
Sbjct: 112 AHFCYEGGIKAFFEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFT 168

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH  G R ALTR +  Y +      K   +   DD+    + ++SV + +P
Sbjct: 169 NNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDP 228

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F+ QTK KLVS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE
Sbjct: 229 KFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARE 288

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKI
Sbjct: 289 LTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKI 348

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           LNV  A  +K+ ++Q++  L+ ALGC         D
Sbjct: 349 LNVEKARFDKMISSQEVGTLITALGCGIGRDEYNPD 384


>gi|18147143|dbj|BAB83052.1| DNA gyrase subunit B [Fundibacter jadensis]
          Length = 390

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 148/402 (36%), Positives = 218/402 (54%), Gaps = 18/402 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+EL +T+ R   +  Q +  G+P  PLE      +  G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQLYRHGVPAMPLEVVGNT-DSSG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I FRP P+ F +   F    L K  +  ++L+  V+     ++   E       + F 
Sbjct: 60  TAIHFRPSPETFTNI-KFHYDILAKRLRELSFLNSGVRIHLLDERNGEE-------DVFE 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTI 322
           + GGL  ++    +N++ ++         E+ G     VE A+ W +   E    + N I
Sbjct: 112 YDGGLSAFVSYLNQNKTPLNQVFHFQFDREEDGI---AVEVAMQWNDSYQENLFCFTNNI 168

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  Y E      K   +   DD       ++SV + +P+F+
Sbjct: 169 PQRDGGTHLAGFRAALTRTLNSYMEKEGLLKKEKANPTGDDAREGLTAVISVKVPDPKFS 228

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVN 439
            QTK KLVS + +  VE  + + F  YL++NP EA  +   +I+ +  R   RK      
Sbjct: 229 SQTKDKLVSSEVKSAVEQTMGELFQDYLLENPQEARAISSKIIDAARARDAARKAREMTR 288

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC Q     +EL+IVEGDSAGGSAKQ R+R NQA+LPL+GKILNV
Sbjct: 289 RKGALDIAGLPGKLADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILNV 348

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVII 540
             A  +K+ ++Q++  L+ ALGC         E LRY ++II
Sbjct: 349 EKARFDKMLSSQEVGTLITALGCGIGRDEYNVEKLRYHRIII 390


>gi|212659900|gb|ACJ37008.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 260

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 94/271 (34%), Positives = 153/271 (56%), Gaps = 13/271 (4%)

Query: 87  DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146
           DE +AG+A+ I V +  +G ++V DNGRGIPV+ H K    S  E+ILT LHAGGKFD++
Sbjct: 1   DEALAGHADSILVKIHVDGSVSVSDNGRGIPVDIH-KEEGVSAAEVILTVLHAGGKFDDN 59

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS+ L + + R    + Q++  G P  PL++  +V  KRGT 
Sbjct: 60  SYKVSGGLHGVGVSVVNALSERLWLDIWRDGYHYQQEYVLGDPQYPLKQL-EVSAKRGTT 118

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F+P  +IF D   F    L K  +  ++L+  +K     ++          +++F++ 
Sbjct: 119 LRFKPAKEIFSD-VEFHYENLAKRLRELSFLNSGLKVSLIDERG------EGRRDDFHYE 171

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG++++++   + ++ + S + +   E  G     V+ A+ W +     +  + N I   
Sbjct: 172 GGIRSFVEHLAQLKTPLHSNVISVTGEHNGI---VVDVALQWTDAYQETMYCFTNNIPQK 228

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
           +GGTH +G R ALTR +  Y E     R   
Sbjct: 229 DGGTHLAGFRAALTRTLGNYIEQNGIARQAK 259


>gi|38350512|gb|AAR18369.1| DNA gyrase subunit B protein [Fusobacterium necrophorum subsp.
           necrophorum]
          Length = 402

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 143/411 (34%), Positives = 216/411 (52%), Gaps = 15/411 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRN 201
           +N  Y++SGGLHGVGISVVNALS+   V V R+  ++ QK+ RG P+  ++     +V  
Sbjct: 1   ENDNYKVSGGLHGVGISVVNALSEWTEVKVKREGNVYYQKYLRGKPVEDVKIISTLEVGE 60

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             GT +TF+PD +IF     F+   L    +  AYL+  ++      +       I +KE
Sbjct: 61  TTGTIVTFKPDIEIFETVI-FEYEVLQHRLKELAYLNRGLEINLLDCR-----NEIGKKE 114

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCN 320
            F F GG+  +L+        + S+    + + +   +  V+ A  +   ++  I S+ N
Sbjct: 115 SFQFEGGISDFLKEVTRENQTLLSKQIHIEGQAE---QVGVDIAFTYTTGQSEVIYSFVN 171

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQNK-RAISIISDDLMISAVGILSVFIREPEF 379
            I T EGG+H +G R  L R +  + +    + +   I           I+SV + +P+F
Sbjct: 172 NINTTEGGSHVTGFRTCLQRLLMIWKKSGIFEGKRWKITRRRHSGRNWAIISVKVPQPQF 231

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN 439
            GQTKTKL + +    V   L      +L  NP +   ++E ++   + R   ++ RE  
Sbjct: 232 EGQTKTKLGNSEVNGIVNTVLSTDLKIFLEDNPNDTKLIIEKILSSKKAREAAQRAREAV 291

Query: 440 RKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +    LPGKLADCS       E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILN
Sbjct: 292 LRKSVLEVGSLPGKLADCSSKKPEECEIFLVEGDSAGGSAKQGRDRYFQAILPLKGKILN 351

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDG 548
           V  AG  K   + +I  +V A G     +  + E LRY K+I+MTDADVDG
Sbjct: 352 VEKAGLHKALESDEIRAMVTAFGTNIGEESFDLEKLRYGKIILMTDADVDG 402


>gi|82409012|gb|ABB73288.1| gyrase beta subunit [Salinispora arenicola]
          Length = 388

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 126/394 (31%), Positives = 205/394 (52%), Gaps = 9/394 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  + V + +    + Q ++   P    +   +  +  G+ ++F
Sbjct: 1   VSGGLHGVGVSVVNALSTRMAVEIQKDGYFWRQSYTDSKPSPLEK--GESTDATGSAVSF 58

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PDP +F     FD   + +  Q  A+L+  +   +  ++  A++ G   +  F + GG+
Sbjct: 59  WPDPAVFETV-DFDFQTIYRRLQEMAFLNRGLTIHFLDERVAADEDGKMREVTFCYKGGI 117

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
             +++    +++ I   +    TE+ G    +VE A+ W E     + ++ N I T EGG
Sbjct: 118 ADFVRHLNASKTPIHKSVVEFGTEEDG---MSVEIAMQWNESYGESVYTFANNINTHEGG 174

Query: 329 THESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           THE G R ALT  I +Y    +  K    +  +D+      I+SV +  P+F GQTKTKL
Sbjct: 175 THEEGFRAALTSVINRYGTDKRLLKSDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKL 234

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRK 446
            +   +  V+    +    +L +NP EA  ++ +           ++ ++   RK+ +  
Sbjct: 235 GNTPVKSFVQRVCNEWLVDWLDRNPAEAKVIITKASQAARARVAAQQARKLARRKSLLES 294

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             +PGKLADC        E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  ++
Sbjct: 295 GSMPGKLADCQSTDPRECEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDR 354

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +  N ++  L+ ALG      +  E LRY K+++
Sbjct: 355 VLKNNEVQALITALGTGIHDDFDIEKLRYHKIVL 388


>gi|18147145|dbj|BAB83053.1| DNA gyrase subunit B [Alcanivorax borkumensis]
          Length = 390

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 151/402 (37%), Positives = 224/402 (55%), Gaps = 18/402 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           ++TY++SGGLHGVG+SVVNALS+EL +T+ R   +  Q ++ G+P  PLE      +  G
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYNHGVPAKPLEVVG-TTDSSG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + FRP P+ F +   F    L K  +  ++L+  V+     ++   E       + F 
Sbjct: 60  TAVHFRPSPETFSNI-KFHYDILAKRLRELSFLNSGVRIHLMDERSGDE-------DVFE 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           + GGL  ++     N++ ++       + E+ G     VE A+ W +     I  + N I
Sbjct: 112 YEGGLSAFVSYLNTNKTPLNQVFHFNYEREEDGI---AVEVAMQWNDSYQENIFCFTNNI 168

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  Y +      K   S   DD       ++SV + +P+F+
Sbjct: 169 PQRDGGTHLAGFRAALTRTLNSYMDKEGFLKKEKASPSGDDAREGLTAVISVKVPDPKFS 228

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVN 439
            QTK KLVS + +  VE  + D F  YL++NP EA  +++ +I+ +  R   RK      
Sbjct: 229 SQTKDKLVSSEVKSAVEQTMGDLFQDYLLENPGEARSIVQKIIDAARARDAARKAREMTR 288

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC Q     +EL+IVEGDSAGGSAKQ R+R NQA+LPL+GKILNV
Sbjct: 289 RKGALDIAGLPGKLADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILNV 348

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
             A  +K+ ++Q++  L+ ALGC   R +Y  E LRY ++II
Sbjct: 349 EKARFDKMLSSQEVGTLITALGCGIGRDEYNIEKLRYHRIII 390


>gi|148470196|gb|ABQ66046.1| gyrase b [uncultured bacterium]
          Length = 432

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 165/440 (37%), Positives = 236/440 (53%), Gaps = 23/440 (5%)

Query: 131 EIILTTLHAGGKFDNST----YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           E+I+T LHAGGKFD  +    Y  SGGLHGVG+SV NALS  L VTV R+  +    F  
Sbjct: 1   EVIMTVLHAGGKFDKKSGQGAYAFSGGLHGVGVSVTNALSRRLEVTVKREGKVHFMAFGE 60

Query: 187 GIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
           G  + PL  +        GTR+   P+P  + D+   +   L +  +SKA L   V    
Sbjct: 61  GFVIDPLTVQGTCGVRNTGTRVRVWPEP-RYFDEPRINLTELERGLRSKAVLLPGVSV-- 117

Query: 246 SCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR----SLISSEIFTGKTEKKGTHRGT 301
              +   E+ G   ++ +++PGGL+ YL  ++        + +SE F G  E      G 
Sbjct: 118 ---RLRKEEEGRTLEQTWHYPGGLEQYLTERMGEDPLLIPIFTSERFFGAEEGDSFAPGE 174

Query: 302 -VEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAISII 358
              WA +W E       S+ N I T  GGTHE+GLR  L   +K + E      R + + 
Sbjct: 175 GASWAFSWHETRTLQGESFVNLIPTALGGTHEAGLRTGLFEALKSFIEHHGLLPRGVRLQ 234

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            +D+      ILS+ + +P+F GQTK KL S +A + V   +RDPF+H+L ++      L
Sbjct: 235 LEDVSARLQFILSIKMLDPQFQGQTKDKLTSREALKLVATLVRDPFEHWLNRHVEHGKAL 294

Query: 419 LEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
            + VI  +  R++  ++ E  + + +  L  PGKL DC        ELF+VEGDSAGGSA
Sbjct: 295 ADLVIRHAMARMKSGQKIEKRKSSGVAVL--PGKLTDCESERIDERELFLVEGDSAGGSA 352

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL---RY 535
           + ARN+  QA+LPLRGK+LN       ++  N +I D+  ALG    ++    DL   RY
Sbjct: 353 RLARNKLTQAILPLRGKVLNSFEVERGRLFGNMEIHDIAVALGIDPHARGDSVDLSQRRY 412

Query: 536 EKVIIMTDADVDGAHIASLL 555
           ++VIIMTDADVDG+HI +LL
Sbjct: 413 DRVIIMTDADVDGSHIRTLL 432


>gi|330979123|gb|EGH78032.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 158

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 75/151 (49%), Positives = 101/151 (66%), Gaps = 4/151 (2%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
              ++ +Y+A +I +L GL+PVR RPGMY   TD    +HL  EVIDN++DE +AG+A  
Sbjct: 2   ATPSASSYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHARS 58

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           ++V L  +  L V D+GRG+PV+ HP+    S +E+ILT LHAGGKF N  Y+ SGGLHG
Sbjct: 59  VQVILHADNSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGLHG 117

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG 187
           VGISVVNALS ++ V V R    +   F+ G
Sbjct: 118 VGISVVNALSTQVRVRVKRDGNEYEMTFADG 148


>gi|83017246|dbj|BAE53543.1| DNA gyrase B [Microbulbifer sp. MBIC08248]
          Length = 389

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 146/401 (36%), Positives = 221/401 (55%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           ++TY++SGGLHGVG+SVVNALS EL + + R   I  Q +  G+P +PLE      +  G
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSKELKLIIRRGGKIHEQIYHHGVPQAPLEVVGD-SDTTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F+P    F +   F    L K  +  ++L+  V+     ++   E       E + 
Sbjct: 60  TTVHFKPSEDTFSNI-EFHFDVLAKRLRELSFLNSGVRIILKDERSGKE-------EVYE 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   +N++ I+  +      + G     VE A+ W +     I  Y N I 
Sbjct: 112 YEGGLSAFVEFLNQNKTPINKVLHFQSQREDGI---AVEVALQWNDSFQESIFCYTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLAGFRAALTRGLNSYIEREGLGKKDKVNTTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  +   F  YL++NP EA  ++  +I+ ++ R   RK R    R
Sbjct: 229 QTKDKLVSSEVKPAVEQEMGHHFTDYLMENPQEAKSVVTKMIDAAKAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC Q     +E+++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQQKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++ ++  L+ ALGC   +S++  + LRY  +II
Sbjct: 349 KARFDKMLSSAEVGTLITALGCGIGKSEFNPDKLRYHSIII 389


>gi|51571597|emb|CAH18965.1| gyrase B [Corallococcus coralloides]
          Length = 392

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 137/404 (33%), Positives = 216/404 (53%), Gaps = 17/404 (4%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y++SGGLHGVG++ VN LS+   V + R   ++ Q ++RG+P    ++     +K GT
Sbjct: 1   GAYKVSGGLHGVGVTCVNFLSEWFKVRIQRAGKVYEQSYARGVPNGQPQEVG-TTDKVGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            I F+PD ++      F+   L +  +  A+L+  +      ++   E         F F
Sbjct: 60  MIHFKPDSQVMETV-DFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD-------FKF 111

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG+ ++++   + +  +  +    KTE++G    ++E A+ W +     I ++ N I T
Sbjct: 112 EGGISSFVEYLNKAKEALHDKPVFIKTEREGV---SLEIAMQWNDGYDERIFTFANNINT 168

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQ 382
            EGG+H SG + ALTR +  YAE     + +      +D       ++SV +  P+F GQ
Sbjct: 169 HEGGSHLSGFKAALTRTLNSYAEKGSLWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQ 228

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRK 441
           TKTKL + + +  VE  + D    +L +NP  A K++  +          R+ +  V RK
Sbjct: 229 TKTKLGNSEVKGLVEQMVNDQLATFLEENPPLAKKVVAKIGDACRARLAARKARETVRRK 288

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC     H +EL+IVEGDSAGGSAKQ R+R NQA+LPLRGKILNV  
Sbjct: 289 GVLDGGGLPGKLADCQSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEK 348

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDA 544
           A  EK+  + +I+ L+ ALG    ++  +    RY ++I+MTDA
Sbjct: 349 ARFEKMLTSAEIVTLITALGTGIVAEDYDPEKARYHRIILMTDA 392


>gi|188529795|gb|ACD62583.1| GyrB [Micromonospora chalcea]
          Length = 393

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 123/399 (30%), Positives = 206/399 (51%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V + +   ++ Q++    P    +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEILKDGFVWRQRYDHSKPTPLEK--GEETDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PDP +F     FD   + +  Q  A+L+  +      ++   ++ G   +  F+
Sbjct: 59  SAVSFWPDPDVFETV-DFDFHTIYRRLQEMAFLTRGLTIHLLDERVPEDEDGKTREVTFH 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    ++S I   +     E+ G    +VE A+ W E     + ++ N I 
Sbjct: 118 YEGGIADFVRHLNASKSPIHKTVVEFGAEETG---MSVEIAMQWNESYGESVYTFANNIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISI-ISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +       +D+      I+SV + +P+F GQ
Sbjct: 175 THEGGTHEEGFRAALTSVVNRYGADKKLLKGDERLSGEDIREGLAAIISVKLTDPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    +    +  +NP EA  +++            ++ ++   RK
Sbjct: 235 TKTKLGNTPVKGFVQRVCNESLVDWFDRNPAEAKIIIQKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDTRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY K+++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDIEKLRYHKIVL 393


>gi|148971345|gb|ABR20210.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 432

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 166/440 (37%), Positives = 236/440 (53%), Gaps = 23/440 (5%)

Query: 131 EIILTTLHAGGKFDNST----YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           E+I+T LHAGGKFD  +    Y  SGGLHGVG+SV NALS  L VTV R+  +    F  
Sbjct: 1   EVIMTVLHAGGKFDKKSGQGAYAFSGGLHGVGVSVTNALSRRLEVTVKREGKVHFMAFGE 60

Query: 187 GIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
           G  + PL  +        GTR+   P+P  + D+   +   L +  +SKA L   V    
Sbjct: 61  GFVIDPLTVQGTCGVRNTGTRVRVWPEP-RYFDEPRINLTELERGLRSKAVLLPGVSV-- 117

Query: 246 SCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR----SLISSEIFTGKTEKKGTHRGT 301
              +   E+ G   ++ +++PGGL+ YL  ++        + +SE F G  E      G 
Sbjct: 118 ---RLRKEEEGRTLEQTWHYPGGLEQYLTERMGEDPLLIPIFTSERFFGAEEGDSFAPGE 174

Query: 302 -VEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAISII 358
              WA +W E       S+ N I T  GGTHE+GLR  L   +K + E      R + + 
Sbjct: 175 GASWAFSWHETRTLQGESFVNLIPTALGGTHEAGLRTGLFEALKSFIEHHGLLPRGVRLQ 234

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            +D+      ILS+ + +P+F GQTK KL S +A + V   +RDPF+H+L ++      L
Sbjct: 235 LEDVSARLQFILSIKMLDPQFQGQTKDKLTSREALKLVATLVRDPFEHWLNRHVEHGKAL 294

Query: 419 LEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
            + VI  +  R++  ++ E  + + +  L  PGKL DC        ELF+VEGDSAGGSA
Sbjct: 295 ADLVIRHAMARMKSGQKIEKRKSSGVAVL--PGKLTDCESERIDERELFLVEGDSAGGSA 352

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL---RY 535
           K ARN+  QA+LPLRGK+LN       ++  N +I D+  ALG    ++    DL   RY
Sbjct: 353 KLARNKLTQAILPLRGKVLNSFEVERGRLFGNMEIHDIAVALGIDPHARGDSVDLSQRRY 412

Query: 536 EKVIIMTDADVDGAHIASLL 555
           ++VIIMTDADVDG+HI +LL
Sbjct: 413 DRVIIMTDADVDGSHIRTLL 432


>gi|66474539|gb|AAY46839.1| GyrB [Aeromonas jandaei]
          Length = 385

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 147/396 (37%), Positives = 223/396 (56%), Gaps = 16/396 (4%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           G+FD+++Y++SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++     
Sbjct: 1   GEFDDNSYKVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST 60

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
              GT + F P P IF D   F    L K  +  ++L+  V      +++  E       
Sbjct: 61  G-TGTEVRFWPSPTIFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE------- 111

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
             F + GG+K +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + 
Sbjct: 112 AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFT 168

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH  G R ALTR +  Y E      K   +   DD+    + ++SV + +P
Sbjct: 169 NNIPQRDGGTHLVGFRTALTRTLNSYMEKEDYSKKAKSAASGDDVREGLIAVISVKVPDP 228

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F+ QTK KLVS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE
Sbjct: 229 KFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARE 288

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKI
Sbjct: 289 LTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKI 348

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           LNV  A  +K+ ++Q++  L+ ALGC         D
Sbjct: 349 LNVEKARFDKMISSQEVGTLITALGCGIGRDEYNPD 384


>gi|66474535|gb|AAY46837.1| GyrB [Aeromonas sp. AN-46]
          Length = 385

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 146/396 (36%), Positives = 223/396 (56%), Gaps = 16/396 (4%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           G+FD+++Y++SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++     
Sbjct: 1   GEFDDNSYKVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT 60

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
              GT + F P P IF D   F    L K  +  ++L+  V      +++  E       
Sbjct: 61  -TTGTEVRFWPSPTIFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE------- 111

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
             F + GG+K +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + 
Sbjct: 112 AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFT 168

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH  G R ALTR +  Y +      K   +   DD+    + ++SV + +P
Sbjct: 169 NNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDP 228

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F+ QTK KLVS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE
Sbjct: 229 KFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARE 288

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKI
Sbjct: 289 LTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKI 348

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           LNV  A  +K+ ++Q++  L+ ALGC         D
Sbjct: 349 LNVEKARFDKMISSQEVGTLITALGCGIGRHEYNPD 384


>gi|51921644|gb|AAU13948.1| gyrase B subunit [Vibrio vulnificus]
          Length = 391

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 146/401 (36%), Positives = 220/401 (54%), Gaps = 15/401 (3%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS+++ +T+ R     SQ +  G+P +PL          GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSEKVLLTIHRGGHTHSQTYRHGVPDAPLAIIGDTEK-TGTTVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F    L K  +  ++L+  V      ++E  +K      + F + GG++
Sbjct: 60  PSAQTFTNI-EFHYDILAKRLRELSFLNSGVSIKLFDEREEDKK------DHFMYEGGIQ 112

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            ++     N++ I  ++F   +E++      VE A+ W +     I  + N I   +GGT
Sbjct: 113 AFVTHLNRNKTPIHEKVFHFNSERED--GIAVEVAMQWNDGFQENIYCFTNNIPQRDGGT 170

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R ALTR +  Y +      K   +   DD       ++SV + +P F+ Q + KL
Sbjct: 171 HLAGFRAALTRTLNSYMDKRSYSKKAKTANSGDDAREGLTAVVSVKVPDPNFSSQNQDKL 230

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRK 446
           VS + +  VE+ + D  + +L ++P EA  +   +I+ +  R   RK R    RK A+  
Sbjct: 231 VSSEVKSAVESFMADKLNDFLAEHPSEAKTVCSKIIDAARAREAARKAREMTRRKGALDL 290

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 291 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 350

Query: 507 IRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADV 546
           + ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADV
Sbjct: 351 MLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADV 391


>gi|126035234|gb|ABN72370.1| gyrase B subunit [Escherichia coli]
          Length = 381

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 142/392 (36%), Positives = 216/392 (55%), Gaps = 16/392 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ GG+K
Sbjct: 60  PSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIK 112

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   +GGT
Sbjct: 113 AFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGT 169

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KL
Sbjct: 170 HLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKL 229

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRK 446
           VS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+  
Sbjct: 230 VSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDL 289

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 290 AGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 349

Query: 507 IRNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537
           + ++Q++  L+ ALGC   R +Y  + LRY  
Sbjct: 350 MLSSQEVATLITALGCGIGRDEYNPDKLRYHN 381


>gi|83017273|dbj|BAE53555.1| DNA gyrase B [Microbulbifer sp. MBIC08258]
          Length = 389

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 148/401 (36%), Positives = 225/401 (56%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           ++TY++SGGLHGVG+SVVNALS+EL +T+ R   I  Q +  G+P +PLE      +  G
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSEELKLTIRRGGKIHEQVYHHGVPQAPLEIVGD-SDTTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F+P P  F +   F    L K  +  ++L+  V+     ++   E       E + 
Sbjct: 60  TAVHFKPSPDTFSNI-EFHFDVLAKRLRELSFLNSGVRIVLKDERSGKE-------EIYE 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   +N++ I+  +      + G     VE A+ W +     I  Y N I 
Sbjct: 112 YEGGLSAFVEFLNQNKTPINKVLHFQSQREDGI---AVEVALQWNDSFQENIFCYTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLAGFRAALTRGLNNYIEKEGLGKKDKVNTTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  +   F+ YL++NP EA  ++  +I+ ++ R   RK R    R
Sbjct: 229 QTKDKLVSSEVKPAVEQEMGHHFNDYLLENPQEAKSVVTKMIDAAKAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC Q     +E+++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQQKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++ ++  L+ ALGC   +S++  + LRY  +II
Sbjct: 349 KARFDKMLSSAEVGTLITALGCGIGKSEFNPDKLRYHSIII 389


>gi|83017241|dbj|BAE53541.1| DNA gyrase B [Microbulbifer sp. MBIC08246]
 gi|83017243|dbj|BAE53542.1| DNA gyrase B [Microbulbifer sp. MBIC08259]
 gi|83017252|dbj|BAE53546.1| DNA gyrase B [Microbulbifer sp. MBIC08250]
          Length = 389

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 146/401 (36%), Positives = 221/401 (55%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           ++TY++SGGLHGVG+SVVNALS EL + + R   I  Q +  G+P +PLE      +  G
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSKELKLIIRRGGKIHEQIYHHGVPQAPLEVVGD-SDTTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F+P    F +   F    L K  +  ++L+  V+     ++   E       E + 
Sbjct: 60  TTVHFKPSEDTFSNI-EFHFDVLAKRLRELSFLNSGVRIVLKDERSGKE-------EVYE 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   +N++ I+  +      + G     VE A+ W +     I  Y N I 
Sbjct: 112 YEGGLSAFVEFLNQNKTPINKVLHFQSQREDGI---AVEVALQWNDSFQESIFCYTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLAGFRAALTRGLNSYIEREGLGKKDKVNTTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  +   F  YL++NP EA  ++  +I+ ++ R   RK R    R
Sbjct: 229 QTKDKLVSSEVKPAVEQEMGHHFTDYLMENPQEAKSVVTKMIDAAKAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC Q     +E+++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQQKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++ ++  L+ ALGC   +S++  + LRY  +II
Sbjct: 349 KARFDKMLSSAEVGTLITALGCGIGKSEFNPDKLRYHSIII 389


>gi|308152495|dbj|BAJ22226.1| DNA gyrase subunit B [Mycobacterium thermoresistibile]
          Length = 418

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 138/424 (32%), Positives = 211/424 (49%), Gaps = 34/424 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVG+SVVNALS  + V + R    + Q + + +P +   K+ +   K G
Sbjct: 1   SDAYAVSGGLHGVGVSVVNALSTRMEVEICRDGYQWFQTYDKSVPGTL--KQGEKTRKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T + F PDP +F     FD   + +  Q +A+L+  +      ++               
Sbjct: 59  TVVRFWPDPDVFETTT-FDFETVARRLQEQAFLNKGLTIELIDERVTAEEVVDEVVSDVA 117

Query: 250 ---------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                      A      +   FY+PGGL  +++     +S I   I     +  G    
Sbjct: 118 EAPKSAEEEAAAANTQKVKHRTFYYPGGLVDFVKHINRTKSPIHPSIIDFSGKGTGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISI 357
            +E A+ W       + ++ NTI T EGGTHE G R ALT  + +Y   +     +  ++
Sbjct: 175 ELEVAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNRYAKDKKLLKDKDPNL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP EA  
Sbjct: 235 TGDDIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKTCNEQLSHWFEANPAEAKI 294

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   I  ++ R+  RK RE V RK+A     LPGKLADC       +EL+IVEGDSAGG
Sbjct: 295 IVNKAISSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPTVSELYIVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY 
Sbjct: 355 SAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDISKLRYH 414

Query: 537 KVII 540
           K+I+
Sbjct: 415 KIIL 418


>gi|290794993|gb|ADD64515.1| DNA gyrase B [Vibrio tasmaniensis]
          Length = 393

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 147/403 (36%), Positives = 223/403 (55%), Gaps = 15/403 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +  G P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT I F P  + F +   F    L K  +  ++L+  V      ++E        + + F
Sbjct: 60  GTEIRFWPSEETFTNI-EFHYDILAKRLRELSFLNSGVSIKLIDERE------EDKMDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ +++    N++ I  +IF   +E+      TVE A+ W +     I  + N I
Sbjct: 113 EYEGGIQAFVEHLNTNKTPIIQKIFHFDSERDD--GITVEVAMQWNDGYQENIYCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GG H +G R ALTR +  + +      K   S   DD       I+SV + +P+F+
Sbjct: 171 PQRDGGAHLAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVN 439
            QTK KLVS + +  VE+ + +    +L++NP EA  +   +I+ +  R   RK      
Sbjct: 231 SQTKDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIM 541
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIM
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIM 393


>gi|6729164|dbj|BAA89715.1| DNA gyrase subunit B [Actinoplanes brasiliensis]
          Length = 396

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 129/400 (32%), Positives = 207/400 (51%), Gaps = 8/400 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS ++ V + +   ++ Q ++   P    +   +  +  G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSSKMFVEIHKSGNVWRQHYTASKPGPLEK--GETTSTTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           + + F PDP +F     FD   + +  Q  A+L+  +    + ++ E A+  G P K  F
Sbjct: 59  SMVQFWPDPTVFETV-EFDWQTIYRRLQEMAFLNRGLTINLTDERAESADDNGEPRKVTF 117

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG+  +++     +S I   +   + E     R  VE A+ W E     + ++ N I
Sbjct: 118 MYAGGIADFVRHLNATKSAIHKTVVEFQAE-DNEARMAVEIAMQWNESYGESVYTFANRI 176

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAG 381
            T EGGTHE G R ALT  + +Y +  +  +   ++  +D+      I+SV +  P+F G
Sbjct: 177 NTHEGGTHEEGFRAALTGVVNRYGKDKKLLKGDQNLSGEDIREGLAAIISVTLANPQFEG 236

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNR 440
           QTKTKL + D +  V+    +    +  +NP EA  ++ +           ++ ++   R
Sbjct: 237 QTKTKLGNTDMKSFVQKVANEQLADWFDRNPAEAKSIITKADQAARARIAAQQARKLARR 296

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+ +    +PGKLADC       +ELFIVEGDSAGGSAKQ RN   QA+LP+RGKILNV 
Sbjct: 297 KSLLESGSMPGKLADCQSTDPRESELFIVEGDSAGGSAKQGRNSRIQAILPIRGKILNVE 356

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +++  N ++  L+ ALG      +    LRY K+++
Sbjct: 357 KARIDRVLKNNEVQSLITALGTGIHEDFDVAKLRYHKIVL 396


>gi|188529743|gb|ACD62558.1| GyrB [Micromonospora sp. 83]
          Length = 393

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 123/399 (30%), Positives = 205/399 (51%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V + +   ++ Q++    P    +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQRYDHSKPTPLEK--GEPTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PDP +F     FD   + +  Q  A+L+  +      ++   ++ G   +  F+
Sbjct: 59  SAVSFWPDPNVFETV-DFDFHTIYRRLQEMAFLTRGLTIHLLDERVPEDEDGKLREVTFH 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    ++S I   +     E+ G    + E A+ W E     + ++ N I 
Sbjct: 118 YDGGIADFVRHLNASKSPIHKTVVEFGAEETG---MSAEIAMQWNESYGESVYTFANNIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISI-ISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +       +D+      I+SV + +P+F GQ
Sbjct: 175 THEGGTHEEGFRAALTSVVNRYGAEKKLLKGDERLSGEDIREGLAAIISVKLTDPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    +    +  +NP EA  ++ +           ++ ++   RK
Sbjct: 235 TKTKLGNTPVKGFVQRVCNESLVDWFDRNPAEAKIIITKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY KV++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDMEKLRYHKVVL 393


>gi|148971337|gb|ABR20206.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 432

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 165/440 (37%), Positives = 231/440 (52%), Gaps = 23/440 (5%)

Query: 131 EIILTTLHAGGKFDNST----YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           E+I+T LHAGGKFD  +    Y  SGGLHGVG+SV NALS  L VTV R+  +    F  
Sbjct: 1   EVIMTVLHAGGKFDKKSGQGAYAFSGGLHGVGVSVTNALSRRLEVTVKREGKVHFMTFGD 60

Query: 187 GIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
           G  + PL  +        GTR+   PDP+ F +        L +  +SKA L   V    
Sbjct: 61  GFVIEPLAVQGTCGARNTGTRVRVWPDPRYFDEPQINLIE-LERGLRSKAVLLPGVSV-- 117

Query: 246 SCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS----EIFTGKTEKKGTHRGT 301
              +   E  G   ++ +++PGGL+ YL  +L    L+      + F G  E      G 
Sbjct: 118 ---RLRKEGDGRTLEQTWHYPGGLEQYLTERLGEDPLLIPVFTGDRFFGVEEGDSFAPGE 174

Query: 302 -VEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAISII 358
              WA +W E       S+ N I T  GGTHE+GLR  L   +K + E      R + + 
Sbjct: 175 GASWAFSWHETRSLQGESFVNLIPTPLGGTHEAGLRTGLFEALKSFIEHHGLLPRGVCLQ 234

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            +D+      ILS+ + +P+F GQTK KL S +A + V   +RDPF+H+L Q+       
Sbjct: 235 LEDVSARLQFILSIRMLDPQFQGQTKDKLTSREALKLVSTLVRDPFEHWLNQHVEHGKAQ 294

Query: 419 LEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
            + VI ++  R++  ++ E  + + +  L  PGKL DC        ELF+VEGDSAGGSA
Sbjct: 295 ADLVIRQAMARMKSGQKIEKRKSSGVAVL--PGKLTDCESERIDERELFLVEGDSAGGSA 352

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL---RY 535
           K ARN+  QA+LPLRGK+LN       ++    +I D+  ALG     +    DL   RY
Sbjct: 353 KMARNKLTQAILPLRGKVLNSFEVEQGRLFAITEIHDIAVALGIDPHGRGEPVDLSQRRY 412

Query: 536 EKVIIMTDADVDGAHIASLL 555
           +++IIMTDADVDG+HI +LL
Sbjct: 413 DRIIIMTDADVDGSHIRTLL 432


>gi|281486953|gb|ADA71024.1| DNA gyrase subunit B [Aeromonas caviae]
          Length = 374

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 143/386 (37%), Positives = 214/386 (55%), Gaps = 16/386 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P P IF D   F    L K  +  ++L+  V T    +++  E         F + GG+K
Sbjct: 60  PSPTIFSDTL-FHYEILAKRLRELSFLNSGVSTRLMDERDGRE-------AHFCYEGGIK 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGT
Sbjct: 112 AFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KL
Sbjct: 169 HLVGFRTALTRTLNNYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
           VS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+  
Sbjct: 229 VSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAVRKARELTRRKGALDI 288

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 289 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 348

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED 532
           + ++Q++  L+ ALGC         D
Sbjct: 349 MISSQEVGTLITALGCGIGRDEYNPD 374


>gi|308152513|dbj|BAJ22235.1| DNA gyrase subunit B [Mycobacterium chubuense]
          Length = 419

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 132/424 (31%), Positives = 208/424 (49%), Gaps = 35/424 (8%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y++SGGLHGVG+SVVNALS  L   V +    + Q + R +P +  +   +     GT
Sbjct: 2   GAYQVSGGLHGVGVSVVNALSTRLEADVRKDGYEWFQTYDRSVPGTLRK--GEKTKGTGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK----------- 254
            I F  DP IF     +D   + +  Q  A+L+  +    + ++   E+           
Sbjct: 60  TIRFWADPDIFETTN-YDFETIARRLQEMAFLNKGLTIELTDERVAPEEVVDDVVSDHAE 118

Query: 255 --------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                             +   F++PGGL  +++     ++ I   +     +  G    
Sbjct: 119 APKSAEEKAAEQSAPQKVKHRVFHYPGGLVDFVKHINRTKTAIQPSVIDFDGKGPGH--- 175

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISI 357
            VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +     +  ++
Sbjct: 176 EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLLKDKDPNL 235

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP EA  
Sbjct: 236 TGDDIREGLAAVISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEQLTHWFEANPAEAKT 295

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGG
Sbjct: 296 VVNKAVSSAQARMAARKARELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGG 355

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY 
Sbjct: 356 SAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDLSKLRYH 415

Query: 537 KVII 540
           K+++
Sbjct: 416 KIVL 419


>gi|147917473|gb|ABQ52589.1| gyrase B subunit [Vibrio alginolyticus]
          Length = 390

 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 146/400 (36%), Positives = 225/400 (56%), Gaps = 15/400 (3%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K GT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQ 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F P  + F +   F    L K  +  ++L+  V      ++E        + + F + 
Sbjct: 60  IRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KHDHFMYE 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG++ ++     N++ I  +IF   +E++     +VE A+ W +     I  + N I   
Sbjct: 113 GGIQAFVDHLNTNKTPIIEKIFHFNSERED--GISVEVAMQWNDGFQENIFCFTNNIPQR 170

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QT
Sbjct: 171 DGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQT 230

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKT 442
           K KLVS + +  VE+A+ +    +L++NP EA  +   +I+ +  R   RK R    RK 
Sbjct: 231 KDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKG 290

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 291 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 350

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIM 541
             +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIM
Sbjct: 351 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIM 390


>gi|254169591|gb|ACT64886.1| DNA gyrase B subunit [Shewanella algae]
          Length = 390

 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 144/401 (35%), Positives = 224/401 (55%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS++L +T+ R   ++ Q +  G P  P+++  +     G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLQLTIRRDGKVYEQFYKHGEPQEPIKEIGEATK-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I F P  + F D   F    L K  +  ++L+  V      +++  +       E F+
Sbjct: 60  TEIRFWPSHETFTDT-EFHYELLAKRIRELSFLNSGVGIRLIDERDNKD-------EFFH 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++    N++ ++  +F    E+      TVE A+ W +     I  + N I 
Sbjct: 112 YEGGIKAFVEYLNRNKTPVNKAVFHFSQERDD--GITVEVAMQWNDGFQESIFCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  Y E      K   +   DD       ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAALTRNLNNYMENEGFNKKGKTNATGDDAREGLTAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +  + YL++NP +A  ++  +I+ +  R   RK R    R
Sbjct: 230 QTKDKLVSSEVKGAVEQTMGEKLNDYLLENPADAKMIVGKIIDAARAREAARKAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  E  RY  +II
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYDPEKTRYHYIII 390


>gi|82409022|gb|ABB73293.1| gyrase beta subunit [Salinispora tropica]
          Length = 388

 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 125/394 (31%), Positives = 204/394 (51%), Gaps = 9/394 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  + V + +   ++ Q ++   P    +   +  +  G+ ++F
Sbjct: 1   VSGGLHGVGVSVVNALSTRMAVEIQKDGYVWRQSYTDSKPTPLEK--GESTDATGSAVSF 58

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PDP++F     FD   + +  Q  A+L+  +   +  ++      G   +  F + GG+
Sbjct: 59  WPDPRVFETV-DFDFQTIYRRLQEMAFLNRGLTIHFLDERVDEGDDGKMREVTFCYQGGI 117

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
             +++    +++ I   +    TE+ G    +VE A+ W E     + ++ N I T EGG
Sbjct: 118 ADFVRHLNASKTSIHKSVVEFGTEEDG---MSVEIAMQWNESYGESVYTFANNINTHEGG 174

Query: 329 THESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           THE G R ALT  I +Y    +  K    +  +D+      I+SV +  P+F GQTKTKL
Sbjct: 175 THEEGFRSALTSVINRYGAEKRLLKSDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKL 234

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRK 446
            +   +  V+    +    +L +NP EA  ++ +           ++ ++   RK+ +  
Sbjct: 235 GNTPVKSFVQRVCNEWLVDWLDRNPAEAKVIITKASQAARARVAAQQARKLARRKSLLES 294

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             +PGKLADC        E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  ++
Sbjct: 295 GSMPGKLADCQSTDPRECEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDR 354

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +  N ++  L+ ALG      +  E LRY K+++
Sbjct: 355 VLKNNEVQALITALGTGIHDDFDIEKLRYHKIVL 388


>gi|83854001|gb|ABC47938.1| gyrase B subunit [Vibrio cholerae O139]
          Length = 386

 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 142/396 (35%), Positives = 220/396 (55%), Gaps = 15/396 (3%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G+P +PL        + GT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDT-ERTGTTV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F    L K  +  ++L+  V    + ++E  +K      + F + G
Sbjct: 60  RFWPSAQTFTNI-EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G++ ++     N++ I  ++F    E++     +VE A+ W +     I  + N I   +
Sbjct: 113 GIQAFVTHLNRNKTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRD 170

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R ALTR +  Y +      K   +   DD       ++SV + +P+F+ QTK
Sbjct: 171 GGTHLAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTK 230

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTA 443
            KLVS + +  VE+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK A
Sbjct: 231 DKLVSSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGA 290

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A 
Sbjct: 291 LDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 350

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
            +K+ ++Q++  L+ ALGC   R +Y  + LRY  +
Sbjct: 351 FDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNI 386


>gi|188529797|gb|ACD62584.1| GyrB [Micromonospora chalcea]
          Length = 393

 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 122/399 (30%), Positives = 207/399 (51%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V + +   ++ Q++    P    +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQRYDHSKPTPLEK--GEETDRAG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + +++ PDP +F     FD   + +  Q  A+L+  +      ++   ++ G   +  F+
Sbjct: 59  SAVSYWPDPDVFETV-DFDFHTIYRRLQEMAFLTRGLTIHLLDERVPEDEDGKTREVTFH 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    ++S I   +     E+ G    +VE A+ W E     + ++ N I 
Sbjct: 118 YEGGIADFVRHLNASKSPIHKTVVEFGAEETG---MSVEIAMQWNESYGESVYTFANNIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISI-ISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +       +D+      I+SV + +P+F GQ
Sbjct: 175 THEGGTHEEGFRAALTSVVNRYGADKKLLKGDERLSGEDIREGLAAIISVKLTDPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRK 441
           TKTKL +   + +V+    +    +  +NP EA  +++            ++ ++   RK
Sbjct: 235 TKTKLGNTPVKGSVQRVCNESLVDWFDRNPAEAKIIIQKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY K+++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDIEKLRYHKIVL 393


>gi|126035354|gb|ABN72430.1| gyrase B subunit [Vibrio cholerae]
          Length = 386

 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 143/396 (36%), Positives = 221/396 (55%), Gaps = 15/396 (3%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS+++ +T+ R   I SQ +  G+P +PL    +   + GT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGET-ERTGTTV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F    L K  +  ++L+  V    + ++E  +K      + F + G
Sbjct: 60  RFWPSAQTFTNI-EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G++ ++     N++ I  ++F    E++     +VE A+ W +     I  + N I   +
Sbjct: 113 GIQAFVTHLNRNKTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRD 170

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R ALTR +  Y +      K   +   DD       ++SV + +P+F+ QTK
Sbjct: 171 GGTHLAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTK 230

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTA 443
            KLVS + +  VE+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK A
Sbjct: 231 DKLVSSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGA 290

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A 
Sbjct: 291 LDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 350

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
            +K+ ++Q++  L+ ALGC   R +Y  + LRY  +
Sbjct: 351 FDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNI 386


>gi|119226144|dbj|BAF41051.1| DNA gyrase subunit B [Mycobacterium chlorophenolicum]
          Length = 418

 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 132/424 (31%), Positives = 210/424 (49%), Gaps = 35/424 (8%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y++SGGLHGVG+SVVNALS  L   V +    + Q + R +P +   ++ +     GT
Sbjct: 1   GAYQVSGGLHGVGVSVVNALSTRLEADVRKDGYEWFQTYDRSVPGTL--RQGEKTKGTGT 58

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK----------- 254
            I F  DP IF     +D   + +  Q  A+L+  +    + ++   E+           
Sbjct: 59  TIRFWADPDIFETTN-YDFETIARRLQEMAFLNKGLTIELTDERVAPEEVVDDVVSDHAE 117

Query: 255 --------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                             +   F++PGGL  +++     ++ I   +     +  G    
Sbjct: 118 APKSAEEKAAEQSAPQKVKHRVFHYPGGLVDFVKHINRTKTAIQPSVIDFDGKGPGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISI 357
            VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +    ++  ++
Sbjct: 175 EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLLKEKDPNL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP EA  
Sbjct: 235 TGDDIREGLAAVISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEQLTHWFEANPAEAKT 294

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGG
Sbjct: 295 VVNKAVSSAQARMAARKARELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY 
Sbjct: 355 SAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDISKLRYH 414

Query: 537 KVII 540
           K+++
Sbjct: 415 KIVL 418


>gi|18147177|dbj|BAB83069.1| DNA gyrase subunit B [Alcanivorax sp. Nag-2]
          Length = 389

 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 152/401 (37%), Positives = 223/401 (55%), Gaps = 18/401 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           TY++SGGLHGVG+SVVNALS+EL +T+ R   +  Q ++ G+P  PLE      +  GT 
Sbjct: 1   TYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYNHGVPAKPLEVVG-TTDSSGTA 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + FRP P+ F +   F    L K  +  ++L+  V+     ++   E       + F + 
Sbjct: 60  VHFRPSPETFSNI-KFHYDILAKRLRELSFLNSGVRIHLMDERSGDE-------DVFEYE 111

Query: 267 GGLKTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
           GGL  ++     N++ ++       + E+ G     VE A+ W +     I  + N I  
Sbjct: 112 GGLSAFVSYLNTNKTPLNQVFHFNYEREEDGI---AVEVAMQWNDSYQENIFCFTNNIPQ 168

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTR +  Y +      K   S   DD       ++SV + +P+F+ Q
Sbjct: 169 RDGGTHLAGFRAALTRTLNSYMDKEGFLKKEKASPSGDDAREGLTAVISVKVPDPKFSSQ 228

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441
           TK KLVS + +  VE  + D F  YL++NP EA  +++ +I+ +  R   RK      RK
Sbjct: 229 TKDKLVSSEVKSAVEQTMGDLFQDYLLENPGEARSIVQKIIDAARARDAARKAREMTRRK 288

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            A+    LPGKLADC Q     +EL+IVEGDSAGGSAKQ R+R NQA+LPL+GKILNV  
Sbjct: 289 GALDIAGLPGKLADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEK 348

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIM 541
           A  +K+ ++Q++  L+ ALGC   R +Y  E LRY ++IIM
Sbjct: 349 ARFDKMLSSQEVGTLITALGCGIGRDEYNIEKLRYHRIIIM 389


>gi|222354432|gb|ACM47984.1| DNA gyrase subunit B [Aeromonas hydrophila]
          Length = 388

 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 151/399 (37%), Positives = 225/399 (56%), Gaps = 17/399 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P 
Sbjct: 2   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPT 60

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 61  IFSDTL-FHYEILAKRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVE 112

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 113 YLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 169

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 170 FRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 229

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 230 VKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 289

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 290 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 349

Query: 511 QQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDG 548
           Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVD 
Sbjct: 350 QEVGTLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDA 388


>gi|188529751|gb|ACD62562.1| GyrB [Micromonospora chalcea]
          Length = 393

 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 124/399 (31%), Positives = 204/399 (51%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V + +   ++ Q++    P    +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQRYDHSKPTPLEK--GEETDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PDP +F    GFD   + +  Q  A+L+  +      ++   ++ G   +  F+
Sbjct: 59  SAVSFWPDPDVFETV-GFDFHTIYRRLQEMAFLTRGLTIHLLDERVPEDEDGKTREVTFH 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    ++S I   +        G    +VE A+ W E     + ++ N I 
Sbjct: 118 YEGGIADFVRHLNASKSPIHKTVVEFGA---GETGMSVEIAMQWNESYGESVYTFANNIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISI-ISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +       +D       I+SV + +P+F GQ
Sbjct: 175 THEGGTHEEGFRAALTSVVNRYGADKKLLKGDERLSGEDTREGLAAIISVKLTDPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    +    +  +NP EA  +++            R+ ++   RK
Sbjct: 235 TKTKLGNTPVKGFVQRVCNESLVDWFDRNPAEAKIIIQKASQAARARIAARQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY K+++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDIEKLRYHKIVL 393


>gi|295388386|gb|ADG03088.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 148/404 (36%), Positives = 228/404 (56%), Gaps = 15/404 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+I F P  + F +   F    L K  +  ++L+  V      ++E        +++ F
Sbjct: 60  GTQIRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KQDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ ++Q    N++LI  +IF    E++     +VE A+ W +     I  + N I
Sbjct: 113 MYEGGIQAFVQHLNTNKTLIIEKIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+
Sbjct: 171 PQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVN 439
            QTK KLVS + +  VE+A+ +    +LV+NP EA  +   +I+        R+ +    
Sbjct: 231 SQTKDKLVSSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDVARAREAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY   IIMT
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNTIIMT 394


>gi|66474501|gb|AAY46820.1| GyrB [Aeromonas enteropelogenes]
 gi|66474519|gb|AAY46829.1| GyrB [Aeromonas hydrophila]
          Length = 385

 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 145/396 (36%), Positives = 223/396 (56%), Gaps = 16/396 (4%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           G+FD+++Y++SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++     
Sbjct: 1   GEFDDNSYKVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT 60

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
              GT + F P P IF D   F    L K  +  ++L+  V      +++  E       
Sbjct: 61  -TTGTEVRFWPSPTIFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE------- 111

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
             F + GG+K +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + 
Sbjct: 112 AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFT 168

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH  G R ALTR +  Y +      K   +   D++    + ++SV + +P
Sbjct: 169 NNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDNVREGLIAVISVKVPDP 228

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F+ QTK KLVS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE
Sbjct: 229 KFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARE 288

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKI
Sbjct: 289 LTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKI 348

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           LNV  A  +K+ ++Q++  L+ ALGC         D
Sbjct: 349 LNVEKARFDKMISSQEVGTLITALGCGIGRDEYNPD 384


>gi|163256336|dbj|BAF95678.1| DNA gyrase subunit B [Bradyrhizobium sp. MAFF 210190]
          Length = 257

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 96/267 (35%), Positives = 146/267 (54%), Gaps = 11/267 (4%)

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AG+A+ + V+L+ +  +TV D+GRGIPV  H K    S  E+I+T LHAGGKFD 
Sbjct: 1   IDEALAGHASRVLVTLNADNSVTVYDDGRGIPVGIH-KEEGVSAAEVIMTQLHAGGKFDQ 59

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +L + + R +     +F+ G  ++PL+       KRGT
Sbjct: 60  NSYKVSGGLHGVGVSVVNALSSKLALRIWRDDKEHYIEFAHGDAVAPLKVVGDAPGKRGT 119

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            +TF    + F +   +D A L    +  A+L+  V    S  +   EK      EE ++
Sbjct: 120 EVTFLASTETFKN-VEYDFATLEHRLRELAFLNSGVHIVLSDMRHAVEKR-----EEMHY 173

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILT 324
            GG++ +++    N+  I       ++E  G     VE A+ W +   E    + N I  
Sbjct: 174 SGGVEEFVKYLDRNKKAIVPAPIMVRSEANGI---GVEAALWWNDSYHENVLCFTNNIPQ 230

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQN 351
            +GGTH +G R ALTR +  YAE    
Sbjct: 231 RDGGTHLAGFRGALTRQVNGYAEANAK 257


>gi|262285791|gb|ACY41221.1| DNA gyrase B [Pseudorhodobacter sp. HDW-19]
          Length = 403

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 142/407 (34%), Positives = 207/407 (50%), Gaps = 18/407 (4%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D + Y++SGGLHGVG+SVVNALSD L + V      +  +F  G  +  + +     N+R
Sbjct: 5   DGNAYKVSGGLHGVGVSVVNALSDWLELRVWHNGMEYFARFEDGECVEHVREVGPAPNER 64

Query: 204 GTRITFRPD-----PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
           GT + F        P        +    L    +  A+L+   +     ++        P
Sbjct: 65  GTEVRFMASSKVNRPDGTFSDLEYSFKTLENRLRELAFLNSGARIIVIDER-----PAEP 119

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TS 317
              E ++ GG++ Y++    +++ I  E      E+ G     VE A+ W +   E    
Sbjct: 120 LHSELFYEGGVREYVKYLDRSKTSILPEPIYIIGERNGIM---VEIAMWWNDSYHENVLP 176

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +GLR ALTR I  YA+ T    K  I    DD       +LSV   
Sbjct: 177 FTNNIPQRDGGTHLAGLRGALTRTINNYAQSTGIAKKEKIDFTGDDAREGLTCVLSVKAP 236

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           +P+F+ QTK KLVS + +  VE  + +    +  +NP  A  ++  +IE +  R   RK 
Sbjct: 237 DPKFSSQTKDKLVSSEVRPAVEGMVNEKLAEWFEENPANAKIIVGKIIEAAFAREAARKA 296

Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           R+   RK+ +    LPGKLADC +  A   ELF+VEGDSAGGSAKQ R+R NQAVLPL+G
Sbjct: 297 RDLTRRKSPLDISNLPGKLADCQEKDASKAELFLVEGDSAGGSAKQGRSRQNQAVLPLKG 356

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVII 540
           KILNV  A  +++ ++Q+I  L+ A+G            LRY K+II
Sbjct: 357 KILNVERARFDRMLSSQEIGTLITAMGTGIGRDEFNLAKLRYHKIII 403


>gi|148611277|gb|ABQ95827.1| DNA gyrase subunit B [Acidiphilium sp. DX1-8]
          Length = 400

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 139/407 (34%), Positives = 216/407 (53%), Gaps = 15/407 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D ++Y++SGGLHGVG +VVNALS+ + V + R       +F  G  ++PL       +  
Sbjct: 1   DQNSYKVSGGLHGVGAAVVNALSEWMEVRIWRDGKEHLIRFENGDTVAPLAVVGASEHGT 60

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TFRP    F     FD A   +  +  A+L+  +      ++  A      ++  F
Sbjct: 61  GTSVTFRPSAATFTR-TEFDFAIYERRLRELAFLNSGLTINLRDERHSAV-----QEAHF 114

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GGL  ++      ++ + S   T   +        VE+A+AW +     +  + N I
Sbjct: 115 RYEGGLVEFVSWLDRAKTQLFSPPVTA-FKDDAPGGIKVEFALAWNDTYHETMLCFTNNI 173

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
           +  +GGTH +G R ALTR + KYAE    K ++S+  +D+      +LSV + +P+F+ Q
Sbjct: 174 VQRDGGTHLAGFRSALTRVVSKYAESLGKKDSLSLSGEDMREGLTAVLSVKVPDPKFSSQ 233

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK KLVS + Q  V+ A+ D  +H+   +P E   + + V++ +  R   RK RE+ R+ 
Sbjct: 234 TKDKLVSSEVQPLVQAAVADALEHWFETHPKEGRLIAQKVMDAASAREAARKARELTRRK 293

Query: 443 A-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC +     +E+FIVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  
Sbjct: 294 GVLDISTLPGKLADCQERDPAKSEIFIVEGDSAGGSAKQGRDRKTQAILPLKGKILNVER 353

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQ------YREEDLRYEKVIIMT 542
           A  +++  + +I  L+ ALG            +    LRY + +IMT
Sbjct: 354 ARFDRMLGSAEIGTLITALGTGIGPAEPEQGGFDISKLRYHRTVIMT 400


>gi|83017295|dbj|BAE53565.1| DNA gyrase B [Microbulbifer maritimus]
          Length = 389

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 148/401 (36%), Positives = 223/401 (55%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           ++TY++SGGLHGVG+SVVNALS EL +T+ R   +  Q F  G+P +PL       +  G
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSKELKLTIRRGGKVHEQTFHHGVPQAPLAVVGDT-DSTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T++ F+P  + F +   F    L K  +  ++L+  V+     ++   E       E + 
Sbjct: 60  TKVHFKPSAETFSNI-EFHFDVLAKRLRELSFLNSGVRIVLKDERSGKE-------EIYE 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL+ +++   +N++ I+  +      + G     VE A+ W +     I  Y N I 
Sbjct: 112 YEGGLRAFVEFLNQNKTPINKVLHFQNQREDGI---AVEVALQWNDSFQENIYCYTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  +S   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLAGFRAALTRGLNNYIEKEGVGKKDKVSTTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  +   F+ YL++NP EA  ++  +I+ +  R   RK R    R
Sbjct: 229 QTKDKLVSSEVKPAVEQEMGHYFNDYLLENPQEAKAVVGKMIDAARAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC Q     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQQKDPALSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++ ++  L+ ALGC   +S++    LRY  +II
Sbjct: 349 KARFDKMLSSAEVGTLITALGCGIGKSEFDPNKLRYHSIII 389


>gi|164608588|gb|ABY62585.1| DNA gyrase beta subunit [Aliivibrio logei]
 gi|164608598|gb|ABY62590.1| DNA gyrase beta subunit [Aliivibrio logei]
          Length = 395

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 152/404 (37%), Positives = 225/404 (55%), Gaps = 14/404 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS+++ +T+ R+  IF Q +  G+P +PL       +  
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVELTINRRGEIFQQIYCHGVPQAPLAVIG-TTDTT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+I F P  + F +   F    L K  +  ++L+  V       +E        + + F
Sbjct: 60  GTKIRFWPSDQTFANI-EFVYDILAKRLRELSFLNSGVSIRLQDMRE------EDKSDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            F GG+K ++     N++ +  +IF    E+K      VE A+ W +     I  Y N I
Sbjct: 113 MFEGGIKAFVTHLNRNKTPVHQKIFYFDAERK-EDGIVVEVAMQWNDSYQENIFCYTNNI 171

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GG H SG R ALTR +  + +      K   S   DD       ++SV + +P+F+
Sbjct: 172 PQRDGGAHLSGFRSALTRTLNSFMDKEGFSKKAKSSASGDDAREGLTAVVSVKVPDPKFS 231

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE+A+ +    +L +NP EA  +   +I+ +  R   RK R    
Sbjct: 232 SQTKDKLVSSEVKSAVESAMNEKLAEFLAENPGEAKMVCSKIIDAARAREAARKAREMTR 291

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 292 RKGALDIAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 351

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 352 EKARFDKMISSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMT 395


>gi|119226148|dbj|BAF41053.1| DNA gyrase subunit B [Nocardia brasiliensis]
          Length = 419

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 132/425 (31%), Positives = 213/425 (50%), Gaps = 35/425 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L   + R    +SQ +   IP      + +   + G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSSRLEAEIDRDGYHWSQSYKDSIPGKL--VQGEASKQTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK---------- 254
           T I F  DP+IF     ++   + +  Q  A+L+  +    + ++    +          
Sbjct: 59  TTIRFWADPEIFETTT-YNFETVARRLQEMAFLNKGLTITLTDERVSESEITDDVVSETA 117

Query: 255 ---------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
                              +   +++PGGL+ +++     +  I + +     +  G   
Sbjct: 118 EAPKHAEADAAAAPVEHKVKTRTYHYPGGLEDFVRHINRTKQPIHNSVVGFTGKGTGH-- 175

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
             +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +   ++  +
Sbjct: 176 -ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGN 234

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           +  DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +A 
Sbjct: 235 LTGDDIREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQKACNEHLTHWFEANPADAK 294

Query: 417 KLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAG
Sbjct: 295 TIVNKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAG 354

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           GSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY
Sbjct: 355 GSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRY 414

Query: 536 EKVII 540
            K+++
Sbjct: 415 HKIVL 419


>gi|186462258|gb|ACC78606.1| DNA gyrase subunit B [Serratia sp. 242-1T]
          Length = 375

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 136/386 (35%), Positives = 210/386 (54%), Gaps = 15/386 (3%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS++L + + R+  +  Q ++ G P +PL+   +  ++ GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYAMGEPQAPLKVVGET-DQTGTTVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F+   L K  +  ++L+  V       +   E       + F++ GG+K
Sbjct: 60  PSYETFTNNVEFEYDILAKRLRELSFLNSGVSIRLKDKRTDKE-------DHFHYEGGIK 112

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I   +F   T K       VE A+ W +     I  + N I   +GGT
Sbjct: 113 AFVEYLNKNKTPIHPNVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGT 169

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R A+TR +  Y +      K  IS   DD     + ++SV + +P+F+ QTK KL
Sbjct: 170 HLVGFRTAMTRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKL 229

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRK 446
           VS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+  
Sbjct: 230 VSSEVKTAVETLMNEKLVDYLMENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDL 289

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 290 AGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 349

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED 532
           + ++Q++  L+ ALGC         D
Sbjct: 350 MLSSQEVATLITALGCGIVRDEYNPD 375


>gi|66474511|gb|AAY46825.1| GyrB [Aeromonas sp. AE-51]
 gi|66474513|gb|AAY46826.1| GyrB [Aeromonas hydrophila]
 gi|66474517|gb|AAY46828.1| GyrB [Aeromonas hydrophila]
 gi|66474521|gb|AAY46830.1| GyrB [Aeromonas hydrophila]
 gi|66474525|gb|AAY46832.1| GyrB [Aeromonas sp. AN-24]
 gi|66474527|gb|AAY46833.1| GyrB [Aeromonas hydrophila]
 gi|66474531|gb|AAY46835.1| GyrB [Aeromonas hydrophila]
          Length = 385

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 146/396 (36%), Positives = 223/396 (56%), Gaps = 16/396 (4%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           G+FD+++Y++SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++     
Sbjct: 1   GEFDDNSYKVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT 60

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
              GT + F P P IF D   F    L K  +  ++L+  V      +++  E       
Sbjct: 61  -TTGTEVRFWPSPTIFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE------- 111

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
             F + GG+K +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + 
Sbjct: 112 AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFT 168

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH  G R ALTR +  Y +      K   +   DD+    + ++SV + +P
Sbjct: 169 NNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDP 228

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F+ QTK KLVS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE
Sbjct: 229 KFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARE 288

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKI
Sbjct: 289 LTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKI 348

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           LNV  A  +K+ ++Q++  L+ ALGC         D
Sbjct: 349 LNVEKARFDKMISSQEVGTLITALGCGIGRDEYNPD 384


>gi|164608586|gb|ABY62584.1| DNA gyrase beta subunit [Aliivibrio logei]
          Length = 395

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 151/404 (37%), Positives = 226/404 (55%), Gaps = 14/404 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS+++ +T+ R+  +F Q +  G+P +PL       +  
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVELTINRRGEVFQQIYCHGVPQAPLAVIG-TTDTT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+I F P  + F +   F    L K  +  ++L+  V       +E        + + F
Sbjct: 60  GTKIRFWPSDQTFANI-EFVYDILAKRLRELSFLNSGVSIRLQDMRE------EDKSDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            F GG+K ++     N++ +  +IF   +E+K      VE A+ W +     I  Y N I
Sbjct: 113 MFEGGIKAFVTHLNRNKTPVHQKIFYFDSERK-EDGIVVEVAMQWNDSYQENIFCYTNNI 171

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GG H SG R ALTR +  + +      K   S   DD       ++SV + +P+F+
Sbjct: 172 PQRDGGAHLSGFRSALTRTLNSFMDKEGFSKKAKSSASGDDAREGLTAVVSVKVPDPKFS 231

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE+A+ +    +L +NP EA  +   +I+ +  R   RK R    
Sbjct: 232 SQTKDKLVSSEVKSAVESAMNEKLAEFLAENPGEAKMVCSKIIDAARAREAARKAREMTR 291

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 292 RKGALDIAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 351

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 352 EKARFDKMISSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMT 395


>gi|222354430|gb|ACM47983.1| DNA gyrase subunit B [Aeromonas hydrophila]
          Length = 387

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 151/398 (37%), Positives = 225/398 (56%), Gaps = 17/398 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P 
Sbjct: 2   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPT 60

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 61  IFSDTL-FHYEILAKRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVE 112

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 113 YLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 169

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 170 FRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 229

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 230 VKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 289

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 290 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 349

Query: 511 QQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVD 547
           Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVD
Sbjct: 350 QEVGTLITALGCGIGRDEYNPDKLRYHNIIIMTDADVD 387


>gi|186462238|gb|ACC78596.1| DNA gyrase subunit B [Serratia sp. J49]
 gi|186462240|gb|ACC78597.1| DNA gyrase subunit B [Serratia sp. J437]
 gi|186462242|gb|ACC78598.1| DNA gyrase subunit B [Serratia sp. J440]
 gi|186462246|gb|ACC78600.1| DNA gyrase subunit B [Serratia sp. 8H1D]
 gi|186462248|gb|ACC78601.1| DNA gyrase subunit B [Serratia sp. 25N]
 gi|186462250|gb|ACC78602.1| DNA gyrase subunit B [Serratia sp. 136-1]
 gi|186462252|gb|ACC78603.1| DNA gyrase subunit B [Serratia sp. 136-2]
 gi|186462254|gb|ACC78604.1| DNA gyrase subunit B [Serratia sp. 226]
 gi|186462256|gb|ACC78605.1| DNA gyrase subunit B [Serratia sp. 242-1B]
          Length = 375

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 136/386 (35%), Positives = 210/386 (54%), Gaps = 15/386 (3%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS++L + + R+  +  Q ++ G P +PL+   +  ++ GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYAMGEPQAPLKVVGET-DQTGTTVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F+   L K  +  ++L+  V       +   E       + F++ GG+K
Sbjct: 60  PSYETFTNNVEFEYDILAKRLRELSFLNSGVSIRLKDKRTDKE-------DHFHYEGGIK 112

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I   +F   T K       VE A+ W +     I  + N I   +GGT
Sbjct: 113 AFVEYLNKNKTPIHPNVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGT 169

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R A+TR +  Y +      K  IS   DD     + ++SV + +P+F+ QTK KL
Sbjct: 170 HLVGFRTAMTRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKL 229

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRK 446
           VS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+  
Sbjct: 230 VSSEVKTAVETLMNEKLVDYLMENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDL 289

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 290 AGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 349

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED 532
           + ++Q++  L+ ALGC         D
Sbjct: 350 MLSSQEVATLITALGCGIGRDEYNPD 375


>gi|19909559|dbj|BAB86975.1| DNA gyrase subunit B [Pseudorhodobacter ferrugineus]
          Length = 397

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 139/405 (34%), Positives = 209/405 (51%), Gaps = 18/405 (4%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           + Y++SGGLHGVG+SVVNALSD L + V R +  +  +F  G  +  + +      ++GT
Sbjct: 1   NAYKVSGGLHGVGVSVVNALSDWLELRVWRNDKEYFARFENGDCVEHVREVGPAPGEKGT 60

Query: 206 RITFRPD-----PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
            + F        P        +    L    +  A+L+   +     ++        P +
Sbjct: 61  EVRFMASAKTNRPDGTFSDLEYSFKTLENRLRELAFLNSGARIIVIDER-----PAEPLQ 115

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYC 319
            E ++ GG++ Y++    +++ I  E      EK G     VE A+ W +   E    + 
Sbjct: 116 TELFYEGGVREYVKYLDRSKTSIMPEPIYIIGEKGGI---VVEVAMWWNDSYHENVLPFT 172

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH +GLR ALTR I  YA+ T    K  +    DD       +LSV + +P
Sbjct: 173 NNIPQRDGGTHLAGLRGALTRTINNYAQSTGIAKKEKVDFTGDDAREGLTCVLSVKVPDP 232

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F+ QTK KLVS + +  VE  + +    +  +NP  A  ++  +IE +  R   RK R+
Sbjct: 233 KFSSQTKDKLVSSEVRAAVEGMVNEKLAEWFEENPSIARIIVGKIIEAALAREAARKARD 292

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              RK+ +    LPGKLADC +  A   ELF+VEGDSAGGSAKQ R+R NQAVLPL+GKI
Sbjct: 293 LTRRKSPLDISNLPGKLADCQEKDASKAELFLVEGDSAGGSAKQGRSRQNQAVLPLKGKI 352

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVII 540
           LNV  A  +++  +Q+I  L+ A+G          + LRY K++I
Sbjct: 353 LNVERARFDRMLGSQEIGTLITAMGTGIGRDEFNLKKLRYHKIVI 397


>gi|19912043|dbj|BAB88333.1| DNA gyrase subunit B [Cytophaga sp. I-2031]
 gi|19912045|dbj|BAB88334.1| DNA gyrase subunit B [Cytophaga sp. I-2034]
          Length = 391

 Score =  213 bits (543), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 141/395 (35%), Positives = 207/395 (52%), Gaps = 9/395 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+S VNALS+ L  TV R   ++ Q++ RG  L P++   +  ++ GT +TF
Sbjct: 1   VSGGLHGVGVSCVNALSNHLKATVHRDGKVWEQEYERGKSLYPVKSVGET-DETGTIVTF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD  IF     +    L    +  ++L+  V    +  + + +K G    E FY   GL
Sbjct: 60  IPDDSIFTQTTEYSYETLANRMRELSFLNKGVTISITDKR-VKDKEGEYLSETFYSDAGL 118

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGG 328
             +++     R  +   +   + EK G     VE A+ +     E    Y N I T EGG
Sbjct: 119 SEFVKFLDGTREPLIQGVIAMEGEKNGIP---VEVAMVYNTSYTENLHSYVNNINTHEGG 175

Query: 329 THESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH SG R  LT  +KKYA+ +    K    +  DD       I+SV + EP   GQTKTK
Sbjct: 176 THLSGFRRGLTSTLKKYADSSGMLEKLKFEVQGDDFREGLTAIVSVKVAEPSIEGQTKTK 235

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIR 445
           L + +    V  A+ +    YL ++P +A  +++ VI  ++ R    K RE+  RKT + 
Sbjct: 236 LGNREVSSAVSQAVSEMLTDYLEEHPDDAKVIVQKVILAAQARHAATKAREMVQRKTVMS 295

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKL+DCS+      E+F+VEGDSAGG+AK  R+R  QA+LPLRGKILNV  A   
Sbjct: 296 IGGLPGKLSDCSEQDPAQCEVFLVEGDSAGGTAKMGRDRKFQAILPLRGKILNVEKAMQH 355

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           K+  N++I ++  ALG    ++   + L  EK+  
Sbjct: 356 KVFENEEIKNIYTALGVTIGTEEDSKALNLEKLRY 390


>gi|66474515|gb|AAY46827.1| GyrB [Aeromonas hydrophila]
          Length = 385

 Score =  213 bits (543), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 146/396 (36%), Positives = 224/396 (56%), Gaps = 16/396 (4%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           G+FD+++Y++SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++     
Sbjct: 1   GEFDDNSYKVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT 60

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
              GT + F P P IF D   F    L K  +  ++L+  V      +++  E       
Sbjct: 61  -TTGTEVRFWPSPTIFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE------- 111

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
             F + GG+K +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + 
Sbjct: 112 AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFT 168

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH  G R ALTR +  Y +      K   +   DD+    + ++SV + +P
Sbjct: 169 NNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDP 228

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F+ QTK KLVS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE
Sbjct: 229 KFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARE 288

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKI
Sbjct: 289 LTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKI 348

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           LNV  A  +K+ ++Q++  L+ ALGC       + D
Sbjct: 349 LNVEKARFDKMISSQEVGTLITALGCGIGRDEYKPD 384


>gi|302746270|gb|ADL62725.1| GyrB [Morganella morganii subsp. sibonii]
          Length = 384

 Score =  213 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 134/393 (34%), Positives = 208/393 (52%), Gaps = 15/393 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVN LS++L + + R   +  Q +  G P   L    +  +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNPLSEKLELVIRRDGKVHEQIYRHGEPQDRLTIVGET-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GTR+ F P    F  +  F    L K  +  ++L+  V       ++  E       + F
Sbjct: 60  GTRVRFWPSMDTFKGETEFQYDILAKRLRELSFLNSGVSIRLVDKRDGKE-------DHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           ++ GG+K +++     ++ I + +F   TEK       VE ++ W +     +  + N I
Sbjct: 113 HYEGGIKAFVEYLSRAKTSIHNNVFYFSTEKDDI---GVEISMQWNDSFQENVYCFTNNI 169

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GG H +G R A+TR +  Y E      K  +S   DD     V ++SV + +P+F+
Sbjct: 170 PQRDGGAHLAGFRAAMTRTLNSYIEKEGLNKKSKVSTTGDDAREGLVAVISVKVPDPKFS 229

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE  + +    YL +NP +   ++  +I+ +  R   R+ R    
Sbjct: 230 SQTKDKLVSSEVKTAVETLMNEKLSEYLDENPNDTKIIVGKIIDAARAREAARRAREMTR 289

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 290 RKGALDLAGLPGKLADCQERDPAFSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 349

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
             A  +K+  +Q++  L+ ALGC         D
Sbjct: 350 EKARFDKMLASQEVATLITALGCGIGRDEYNPD 382


>gi|308152437|dbj|BAJ22197.1| DNA gyrase subunit B [Rhodococcus globerulus]
 gi|308152451|dbj|BAJ22204.1| DNA gyrase subunit B [Rhodococcus rhodochrous]
          Length = 419

 Score =  213 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 135/425 (31%), Positives = 214/425 (50%), Gaps = 35/425 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L V +      + Q ++   P      +     + G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLDVDIKVDGYEWHQTYTDSKPGEL--IQGPATKETG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------ 258
           T ++F  DP+IF     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTVSFWADPEIFETTR-YNFETVARRLQEMAFLNKGLTITLTDERAEVIDVDEESIDVAE 117

Query: 259 -------------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
                              +   +++PGGL+ Y++   +++S I + +     +  G   
Sbjct: 118 APKSAAETQEAAAAAPRKAKTRVYHYPGGLEDYVRHINKSKSPIHNSVVGFTAKGTGH-- 175

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
             +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++  +
Sbjct: 176 -ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYARDKKLLKEKEQN 234

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           +  DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+L  NP +A 
Sbjct: 235 LNGDDIREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQKACNEHLQHWLEANPADAK 294

Query: 417 KLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            ++   +  ++ R+  RK RE V RK+A     LPGKLADC  N    +E++IVEGDSAG
Sbjct: 295 TIVNKAVSSAQARIAARKARELVRRKSATDLGGLPGKLADCRSNDPEKSEIYIVEGDSAG 354

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           GSAK  R+   QA+LPLRGKILNV  A  ++   N +I  ++ A G     ++    LRY
Sbjct: 355 GSAKSGRDSMYQAILPLRGKILNVEKARLDRALKNTEIQSMITAFGTGIHDEFDIAKLRY 414

Query: 536 EKVII 540
            K+++
Sbjct: 415 HKIVL 419


>gi|190341292|gb|ACE74723.1| DNA gyrase subunit B [Bacillus circulans]
          Length = 396

 Score =  213 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 151/405 (37%), Positives = 220/405 (54%), Gaps = 13/405 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKF    Y++SGGLHGVG SVVNALS EL V V R   I+ QK+ +G+P + LE   
Sbjct: 1   HAGGKFGGGGYKVSGGLHGVGASVVNALSTELEVFVHRDGNIYYQKYQKGVPAADLEIIG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +          F+PD +IF +   +D   L    +  A+L+  ++      +E  EK   
Sbjct: 61  ETDTTGT-TTHFKPDGEIFKETLEYDYETLANRVRELAFLNRDIRITIEDKREGMEKRKE 119

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
                + + GG+K+Y++    N+ ++  E    + EK G    TVE +  + +     I 
Sbjct: 120 -----YQYEGGIKSYVEHLNRNKEVLFEEPIYIEGEKDGI---TVEISFQYNDGYTGNIH 171

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFI 374
           S+ N I T EGG+HESG + ALTR I  YA      R    ++  +D+    V I+SV  
Sbjct: 172 SFANNINTHEGGSHESGFKTALTRVINDYARKNSLLRESDTNLSGEDVREGLVAIVSVKH 231

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            +P+F GQTKTKL + + +   +    +  + +L++NP  A K+++        R+  +K
Sbjct: 232 PDPQFEGQTKTKLGNSEVRTITDTVFSEHHEKFLLENPTVARKIVDKGQMALRARIAAKK 291

Query: 435 QRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            RE   RK+A+    LPGKLADCS      +ELFIVEGDSAGGSAK  R+R  QA+LPLR
Sbjct: 292 ARELTRRKSALEVSSLPGKLADCSSRDPKISELFIVEGDSAGGSAKSGRDRHFQAILPLR 351

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538
           GKILNV  A  ++I +N ++  ++ A+G      Y     RY K+
Sbjct: 352 GKILNVEKARLDRILSNNEVRSMITAIGTGIGDDYDISKARYHKI 396


>gi|6729253|dbj|BAA89748.1| DNA gyrase subunit B [Mycobacterium gastri]
 gi|6729301|dbj|BAA89772.1| DNA gyrase subunit B [Mycobacterium gastri]
 gi|6729303|dbj|BAA89773.1| DNA gyrase subunit B [Mycobacterium gastri]
          Length = 419

 Score =  213 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 137/425 (32%), Positives = 213/425 (50%), Gaps = 35/425 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y ISGGLHGVG+SVVNALS  L V + R    +SQ + +  P+    K+     K G
Sbjct: 1   SDAYAISGGLHGVGVSVVNALSIRLEVEIKRDGHEWSQVYEKSEPMGL--KQGAPTKKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY--------- 255
           T + F  DP +F     +D   + +  Q  A+L+  +    +  +   ++          
Sbjct: 59  TTVRFWADPNVFETT-EYDFETVARRLQEMAFLNKGLTINLTDQRVTQDEVVDEVVSDVA 117

Query: 256 ----------------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
                              +K  F++PGGL  +++     ++ I S I     +  G   
Sbjct: 118 EAPKSASEKAAEFTAPHKVKKRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGH-- 175

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
             VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +    +  +
Sbjct: 176 -EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPN 234

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           +  DD+      ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A 
Sbjct: 235 LTGDDIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPADAK 294

Query: 417 KLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAG
Sbjct: 295 TVVNKAVSSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAG 354

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           GSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY
Sbjct: 355 GSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIARLRY 414

Query: 536 EKVII 540
            K+++
Sbjct: 415 HKIVL 419


>gi|188529779|gb|ACD62575.1| GyrB [Micromonospora sp. 85]
          Length = 393

 Score =  213 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 127/399 (31%), Positives = 209/399 (52%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS ++ V + +   ++ Q ++   P    +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTKMFVEIHKSGAVWRQHYTHSKPGPLEK--GEATDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PDP +F     FD   + +  Q  A+L+  ++     ++   E  G   +  FY
Sbjct: 59  SAVSFWPDPDVFETV-DFDFQTIYRRLQEMAFLNRALRIHLLDERVAEEVDGRQREVTFY 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    ++S I   +     E++G    ++E A+ W E     + ++ NTI 
Sbjct: 118 YEGGIADFVRHLNASKSPIHKTVVEFIAEEEG---MSLETAMQWNESYGESVYTFANTIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQ
Sbjct: 175 THEGGTHEEGFRSALTSVVNRYGTDKKLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    D    +  +NP EA  ++ +           ++ ++   RK
Sbjct: 235 TKTKLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKMIITKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQPTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY KV++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDMEKLRYHKVVL 393


>gi|19909633|dbj|BAB87012.1| DNA gyrase subunit B [Roseobacter litoralis Och 149]
          Length = 391

 Score =  213 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 138/401 (34%), Positives = 212/401 (52%), Gaps = 15/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALSD L + + R+      +F  G  +  L+      ++ G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSDWLELRIWREGKEHVARFEGGFTVDHLKVVGDT-DRTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F      F +   +    L K  +  A+L+  V+     ++   E          +
Sbjct: 60  TEVRFMASTDTFSNL-EYSFETLEKRLRELAFLNSGVRIILIDERPAEELRSE-----LF 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+K +++    ++S +  E      EK       VE A+ W +   E    + N I 
Sbjct: 114 YEGGVKEFVKYLDRSKSSVMPEPIFITGEKDDI---GVEVAMWWNDSYHENVLPFTNNIP 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR I  YA+ +    K  +S   DD       +LSV + +P+F+ 
Sbjct: 171 QRDGGTHMAGFRGALTRTINNYAQSSGIARKEKVSFTGDDAREGLTCVLSVKVPDPKFSS 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTK KLVS + +  VE  + +    +  +NP EA  ++  +IE +  R   RK R+   R
Sbjct: 231 QTKDKLVSSEVRPAVEGLVNEKLAEWFEENPSEAKIVVGKIIEAAHAREAARKARDLTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           KTA+    L GKL DCS+     TE+F+VEGDSAGGSA+  R+R  QA+LPL+GKILNV 
Sbjct: 291 KTAMDVNFLAGKLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +++  +Q+I +LV ALG    R ++  + LRY K++I
Sbjct: 351 RARFDRMLGSQEIGNLVMALGTGIGRDEFNIDKLRYHKIVI 391


>gi|116874216|gb|ABK30797.1| DNA gyrase subunit B [Photorhabdus temperata]
          Length = 368

 Score =  213 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 139/377 (36%), Positives = 209/377 (55%), Gaps = 15/377 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS++L + + R   +  Q +  G+P SPL+   +   + GTR+ F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLELIIRRDGKVHEQTYHLGVPQSPLKVVGET-EQTGTRVRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P    F +   F    L K  +  ++L+  V       +   E       + F++ GG+
Sbjct: 60  WPSMDTFRNNTEFQHDILAKRLRELSFLNSGVSIRLLDKRTNIE-------DHFHYEGGI 112

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K +++   +N++ I   +F   TEK G     VE A+ W +     I  + N I   +GG
Sbjct: 113 KAFVEFLNKNKTPIHPNVFYFSTEKDGI---GVEAALQWNDGFQENIYCFTNNIPQRDGG 169

Query: 329 THESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH  G R A+TR +  Y +      K  +S   DD     V ++SV + +P+F+ QTK K
Sbjct: 170 THLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDK 229

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIR 445
           LVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+ 
Sbjct: 230 LVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVSKIIDAARAREAARKAREMTRRKGALD 289

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +
Sbjct: 290 LAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 349

Query: 506 KIRNNQQIMDLVQALGC 522
           K+ ++Q++  L+ ALGC
Sbjct: 350 KMLSSQEVATLITALGC 366


>gi|82409040|gb|ABB73302.1| gyrase beta subunit [Salinispora tropica]
          Length = 388

 Score =  213 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 125/394 (31%), Positives = 204/394 (51%), Gaps = 9/394 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  + V + +   ++ Q ++   P    +   +  +  G+ ++F
Sbjct: 1   VSGGLHGVGVSVVNALSTRMAVEIQKDGYVWRQSYTDSKPTPLEK--GESTDATGSAVSF 58

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PDP++F     FD   + +  Q  A+L+  +   +  ++      G   +  F + GG+
Sbjct: 59  WPDPRVFETV-AFDFQTIYRRLQEMAFLNRGLTIHFLDERVDEGDDGKMREVTFCYQGGI 117

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
             +++    +++ I   +    TE+ G    +VE A+ W E     + ++ N I T EGG
Sbjct: 118 ADFVRHLNASKTSIHKSVVEFGTEEDG---MSVEIAMQWNESYGESVYTFANNINTHEGG 174

Query: 329 THESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           THE G R ALT  I +Y    +  K    +  +D+      I+SV +  P+F GQTKTKL
Sbjct: 175 THEEGFRSALTSVINRYGAEKRLLKSDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKL 234

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRK 446
            +   +  V+    +    +L +NP EA  ++ +           ++ ++   RK+ +  
Sbjct: 235 GNTPVKSFVQRVCNEWLVDWLDRNPAEAKVIITKASQAARARVAAQQARKLARRKSLLES 294

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             +PGKLADC        E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  ++
Sbjct: 295 GSMPGKLADCQSTDPRECEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDR 354

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +  N ++  L+ ALG      +  E LRY K+++
Sbjct: 355 VLKNNEVQALITALGTGIHDDFDIEKLRYHKIVL 388


>gi|29652685|gb|AAO87312.1| DNA gyrase B [Listeria monocytogenes]
          Length = 194

 Score =  213 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 85/193 (44%), Positives = 118/193 (61%), Gaps = 2/193 (1%)

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +R +    + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+L
Sbjct: 4   AKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAIL 63

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           P+RGKILNV  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAH
Sbjct: 64  PIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAH 123

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           I +LLLT FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  
Sbjct: 124 IRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDT 181

Query: 611 KIEISRFKGLGEM 623
           K  I R+KGLGEM
Sbjct: 182 KYSIQRYKGLGEM 194


>gi|324039436|dbj|BAJ78471.1| DNA gyrase subunit B [Alcanivorax sp. TE-9]
          Length = 392

 Score =  213 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 143/404 (35%), Positives = 220/404 (54%), Gaps = 17/404 (4%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS+ L +T+ R   +  Q +  G+P  PLE         
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSETLKLTIRRHGKVHEQVYHDGVPEKPLEVVG-TTESS 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT I FRP    F +   F    L K  +  ++L+  V+     ++   E       + F
Sbjct: 60  GTAIRFRPSSGTFNNI-QFHYDILAKRLRELSFLNSGVRIHLVDERSGDE-------DVF 111

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GGL  ++    +N++ ++         + G    +VE A+ W +     I  Y N I
Sbjct: 112 EYEGGLSAFVTYLNQNKNSLNQVFHFQVDREDGI---SVEVAMQWNDSYQENIFCYTNNI 168

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  Y E      +   +   DD       I+SV + +P+F+
Sbjct: 169 PQRDGGTHLAGFRAALTRTLNNYMEKEGFLKREKANPSGDDAREGLTAIISVKVPDPKFS 228

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVN 439
            QTK KLVS + +  VE  + + F  +L+++P+E+  +++ +I+ +  R   RK      
Sbjct: 229 SQTKDKLVSSEVKSAVEQTMTERFQDFLLEHPVESKNIVQKIIDAARARDAARKAREMTR 288

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ R+R  QA+LPL+GKILNV
Sbjct: 289 RKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRDRKYQAILPLKGKILNV 348

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMT 542
             A  +K+ ++Q++  L+ ALGC       + + LRY ++IIMT
Sbjct: 349 EKARFDKMLSSQEVATLITALGCGIGRDEYDADKLRYHRIIIMT 392


>gi|302746260|gb|ADL62720.1| GyrB [Morganella morganii subsp. morganii]
          Length = 386

 Score =  213 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 139/397 (35%), Positives = 212/397 (53%), Gaps = 16/397 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVN LS++L + + R   +  Q +  G P   L    +  +K GTR+ F
Sbjct: 1   VSGGLHGVGVSVVNPLSEKLELVIRRDGKVHEQIYRHGEPQDRLTVVGET-DKTGTRVRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P    F  +  F    L K  +  ++L+  V       ++  E       + F++ GG+
Sbjct: 60  WPSMDTFKGETEFQYDILAKRLRELSFLNSGVSIRLIDKRDGKE-------DHFHYEGGI 112

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K +++     ++ I + +F   TEK       VE ++ W +     +  + N I   +GG
Sbjct: 113 KAFVEYLSRAKTSIHNNVFYFSTEKDDI---GVEISMQWNDSFQENVYCFTNNIPQRDGG 169

Query: 329 THESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
            H +G R A+TR +  Y E      K  +S   DD     V ++SV + +P+F+ QTK K
Sbjct: 170 AHLAGFRAAMTRTLNSYIEKEALNKKSKVSTTGDDAREGLVAVISVKVPDPKFSSQTKDK 229

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIR 445
           LVS + +  VE  + +    YL +NP +   ++  +I+ +  R   R+ R    RK A+ 
Sbjct: 230 LVSSEVKTAVETLMNEKLSEYLDENPNDTKIIVGKIIDAARAREAARRAREMTRRKGALD 289

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +
Sbjct: 290 LAGLPGKLADCQERDPAFSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 349

Query: 506 KIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIM 541
           K+  +Q++  L+ ALGC   R +Y  + LRY  +IIM
Sbjct: 350 KMLASQEVATLITALGCGIGRDEYNPDKLRYHSIIIM 386


>gi|19909621|dbj|BAB87006.1| DNA gyrase subunit B [Oceanospirillum linum]
          Length = 389

 Score =  213 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 139/401 (34%), Positives = 216/401 (53%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS++L +TV R   +  Q +  G+P +PL    +     G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLTLTVWRSGKVHEQVYVHGVPETPLRVIGETEK-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F P P+ F +   F    L K  +  ++L+  V    + ++           + F 
Sbjct: 60  TETRFHPSPETFTNV-EFHYDILAKRLRELSFLNSGVSITLTDERS-------GRTDNFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   +N++ ++         + GT    VE A+ W +     I  + N I 
Sbjct: 112 YEGGLSAFVEYLNQNKTALNDVFHFSAEREDGT---GVEVALQWNDSYQENIYCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  Y   +    K   +   +D       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLAGFRAALTRTLNNYIEQDPKVKKDKANTSGEDAREGLTAIVSVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  +   F  YL++ P EA  ++  +I+ +  R   RK R    R
Sbjct: 229 QTKDKLVSSEVKSAVEQEMGRLFADYLLEKPNEAKAIVNKMIDAARAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++ ++  L+ A+GC   R ++  + LRY  +II
Sbjct: 349 KARFDKMLSSAEVGTLITAMGCGIGREEFNPDKLRYHSIII 389


>gi|110612697|gb|ABG78311.1| GyrB [uncultured bacterium]
          Length = 399

 Score =  213 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 147/409 (35%), Positives = 212/409 (51%), Gaps = 13/409 (3%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFDN+TY++SGGLHGV +SVVNALS+ L + + +    F Q + +G P +PL       
Sbjct: 1   GKFDNNTYKVSGGLHGVWVSVVNALSETLLLEIDQMGKHFKQTYHKGEPEAPLSIAGD-S 59

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
           +K GT I F PD  I      F    L    +   YL+  +    + ++ + E       
Sbjct: 60  DKTGTTIWFYPDMSIMETD-EFSFDVLAHRFRELGYLNPALTIVLTEEETLRETV----- 113

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCN 320
             F+  GG++++L    EN+  I   +F  KT + G+    V +      +   + SY N
Sbjct: 114 --FHDEGGIRSFLVFLNENKRTIHETLFFRKTFENGSI-FEVSFQYQDTTDAETLLSYVN 170

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFA 380
            I T EGG+H  G R ALTR + ++       +   +  +D+      I+S+ I  P+F 
Sbjct: 171 NIPTREGGSHVKGFRSALTRVVNRFIRDKNLNKGEEVRGEDIREGLSAIISIKIPNPQFE 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VN 439
           GQTK KL S      +E+ L +  +    +    A  + +  I  ++ R   RK RE   
Sbjct: 231 GQTKAKLGSSWVAGAMESFLAESLEDAFEKQGAVARAIADKAILSAQAREAARKARELTK 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK  +    LPGKLADC +N    +EL+IVEGDSAGGSAKQ R+R  QA+LPL+GKILNV
Sbjct: 291 RKNVLEGSNLPGKLADCQENDPAKSELYIVEGDSAGGSAKQGRDRKFQAILPLKGKILNV 350

Query: 500 ASAG-SEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADV 546
                 EK   + ++  L+ A+GC    +      LRY K+IIMTDADV
Sbjct: 351 EKTKGIEKFITHDEVRALITAVGCGLGEEDFSLKNLRYHKIIIMTDADV 399


>gi|126035242|gb|ABN72374.1| gyrase B subunit [Enterobacter cloacae]
          Length = 380

 Score =  213 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 144/391 (36%), Positives = 218/391 (55%), Gaps = 16/391 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL       +K GT + F
Sbjct: 1   VSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYQHGVPEAPLAVTGDT-DKTGTMVRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ GG+
Sbjct: 60  WPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE-------DHFHYEGGI 112

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   +GG
Sbjct: 113 KAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGG 169

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK K
Sbjct: 170 THLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDK 229

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIR 445
           LVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+ 
Sbjct: 230 LVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALD 289

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +
Sbjct: 290 LAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 349

Query: 506 KIRNNQQIMDLVQALGCRT-RSQYREEDLRY 535
           K+ ++Q++  L+ ALGC   R +Y  + LRY
Sbjct: 350 KMLSSQEVATLITALGCGIGRDEYNPDKLRY 380


>gi|51571563|emb|CAH18948.1| gyrase B [Corallococcus coralloides]
 gi|51571565|emb|CAH18949.1| gyrase B [Corallococcus coralloides]
          Length = 392

 Score =  213 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 139/404 (34%), Positives = 214/404 (52%), Gaps = 17/404 (4%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y++SGGLHGVG++ VN LS+   V V R   ++ Q ++RG+     ++     +KRGT
Sbjct: 1   GAYKVSGGLHGVGVTCVNFLSEWFKVRVQRAGKVYEQSYARGVSNGSPQEVG-TTDKRGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            I F+PD  +      F+   L +  +  A+L+  +      ++   E         F F
Sbjct: 60  TIHFKPDSMVMETV-DFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD-------FKF 111

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG+ ++++   + +  +  +    K+E++G    ++E A+ W +     I ++ N I T
Sbjct: 112 EGGISSFVEYLNKAKEALHDKPVYIKSEREGV---SLEIAMQWNDGYDERIFTFANNINT 168

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQ 382
            EGG+H SG + ALTR +  YAE     + +      +D       ++SV +  P+F GQ
Sbjct: 169 HEGGSHLSGFKAALTRTLNSYAEKGSLWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQ 228

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRK 441
           TKTKL + + +  VE  + D    +L +NP  A K++  +          R+ +  V RK
Sbjct: 229 TKTKLGNSEVKGLVEQMVNDQLASFLEENPPLAKKVVAKIGDACRARLAARKARETVRRK 288

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC     H +EL+IVEGDSAGGSAKQ R+R NQA+LPLRGKILNV  
Sbjct: 289 GVLDGGGLPGKLADCQSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEK 348

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           A  EK+  + +I+ L+ ALG       Y  E  RY ++I+MTDA
Sbjct: 349 ARFEKMLTSAEIVTLITALGTGIGAEDYDPEKARYHRIILMTDA 392


>gi|126035366|gb|ABN72436.1| gyrase B subunit [Yersinia enterocolitica]
          Length = 380

 Score =  213 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 139/391 (35%), Positives = 215/391 (54%), Gaps = 16/391 (4%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS++L + + R+  +  Q +  G+P +PL+   +  ++ GT + F P
Sbjct: 1   GGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DQTGTTVRFWP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V       +   E       + F++ GG+K 
Sbjct: 60  SFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDKRNDKE-------DHFHYEGGIKA 112

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++   +N++ I  ++F   T K       VE A+ W +     I  + N I   +GGTH
Sbjct: 113 FVEYLNKNKNPIHPKVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTH 169

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R A+TR +  Y +      K  IS   DD     + ++SV + +P+F+ QTK KLV
Sbjct: 170 LVGFRTAMTRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLV 229

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447
           S + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+   
Sbjct: 230 SSEVKTAVETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLA 289

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+
Sbjct: 290 GLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 349

Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537
            ++Q++  L+ ALGC   R +Y  + LRY  
Sbjct: 350 LSSQEVATLITALGCGIGRDEYNPDKLRYHN 380


>gi|83017268|dbj|BAE53553.1| DNA gyrase B [Microbulbifer sp. MBIC06120]
          Length = 389

 Score =  213 bits (543), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 146/401 (36%), Positives = 222/401 (55%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           ++TY++SGGLHGVG+SVVNALS EL +T+ R   I  Q +  G+P +PL+      +  G
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSRELKLTIRRGGKIHEQTYHHGVPQAPLDIVGD-SDTTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F+P    F +   F    L K  +  ++L+  V+     ++   E       E + 
Sbjct: 60  TTVHFKPSADTFSNI-EFHFDVLAKRLRELSFLNSGVRIVLKDERSGKE-------EVYE 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   +N++ I+  +      + G     VE A+ W +     I  Y N I 
Sbjct: 112 YEGGLSAFVEFLNQNKTPINKVLHFQSQREDGI---AVEVALQWNDSFQESIFCYTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLAGFRAALTRGLNSYIEREGLGKKDKVNTTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  +   F  YL++NP EA  ++  +I+ ++ R   RK R    R
Sbjct: 229 QTKDKLVSSEVKPAVEQEMGHHFTDYLMENPQEAKSVVTKMIDAAKAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC Q     +E+++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQQKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++ ++  L+ ALGC   +S++  + LRY  +II
Sbjct: 349 KARFDKMLSSAEVGTLITALGCGIGKSEFNPDKLRYHSIII 389


>gi|58530654|dbj|BAD89281.1| DNA gyrase B [Ferrimonas sp. A3B-58]
          Length = 390

 Score =  213 bits (543), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 146/401 (36%), Positives = 228/401 (56%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALSD+L +TV RQ  +  Q +  G P +PL+      +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSDKLELTVRRQGHVHEQTYHLGDPAAPLKAVGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I F P P+IF D   F    L K  +  ++L+  V      +++  E       + + 
Sbjct: 60  TTIRFWPSPQIFSDTL-FHYEILAKRLRELSFLNSGVSIRLVDERDGKE-------DHYS 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG++ +++   +N++ +  ++F   TE++     +VE ++ W +     I  + N I 
Sbjct: 112 YEGGIQAFVEFLNQNKTPVHQQVFHFTTERED--GISVEVSMQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  Y +      K   S   DD       ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAALTRTLNNYMDKEGYSKKAKTSASGDDAREGLTAVISVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK R    R
Sbjct: 230 QTKDKLVSSEVKTAVEQAMGEQLQDFLLENPGDAKTVVNKIIDAARAREAARKAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR  QA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKFQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ A+GC   R +Y  +  RY  +II
Sbjct: 350 KARFDKMLSSQEVATLITAMGCGIGRDEYNPDKTRYHNIII 390


>gi|19909555|dbj|BAB86973.1| DNA gyrase subunit B [Rhodothalassium salexigens]
          Length = 390

 Score =  213 bits (543), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 144/399 (36%), Positives = 213/399 (53%), Gaps = 14/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS+ L + + R    F+ +F  G P   L +      K G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSEWLELRIWRDGGEFTMRFEHGEPQGDLARVGDAATKTG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T++TF+P    F     F+  +L +  +  A+L+  V       +        P +   +
Sbjct: 61  TQVTFKPSEATF-KIVDFEFEKLERRFRELAFLNSGVHIQLEDHRHAD-----PRQVNLH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+  +++     ++ + +E  T + E+ G    TVE A+ W +   E    + N I 
Sbjct: 115 YEGGITEFVRHIDRTKTALVTEPITIQGERDGV---TVELAMEWTDSYHENVFCFTNNIP 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +  R ALTR +  YA  +    K  +SI  DD       +LSV + +P+F+ 
Sbjct: 172 QRDGGTHLAAFRAALTRAVNAYAGSSGQAKKAKVSISGDDAREGLTAVLSVKVPDPKFSS 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTK KLVS + +  VE  + +    +  +NP EA  ++  V++ +  R   RK RE   R
Sbjct: 232 QTKEKLVSSEVRPAVEALMNEQLATWFEENPNEAKAVIAKVVDAAAAREAARKARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +ELFIVEGDSAGGSAKQ RNRS QA+LPLRGKILNV 
Sbjct: 292 KGALDVASLPGKLADCQERDPAKSELFIVEGDSAGGSAKQGRNRSFQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKV 538
            A  +++  + +I  L+ ALG          E LRY K+
Sbjct: 352 RARFDRMLASNEIGTLITALGTGIGRDDFNAEKLRYHKI 390


>gi|188529775|gb|ACD62573.1| GyrB [Micromonospora sp. 78]
          Length = 393

 Score =  213 bits (543), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 123/399 (30%), Positives = 205/399 (51%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V + +   ++ Q++    P    +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQRYDHSKPTPLEK--GEPTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PDP +F     FD   + +  Q  A+L+  +      ++   ++ G   +  F+
Sbjct: 59  SAVSFWPDPDVFETV-DFDFHTIYRRLQEMAFLTRGLTIHLLDERVPEDEDGKLREVTFH 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    ++S I   +     E+ G    + E A+ W E     + ++ N I 
Sbjct: 118 YDGGIADFVRHLNASKSPIHKTVVEYGAEETG---MSAEIAMQWNESYGESVYTFANNIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISI-ISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +       +D+      I+SV + +P+F GQ
Sbjct: 175 THEGGTHEEGFRAALTSVVNRYGAEKKLLKGDERLSGEDIREGLAAIISVKLTDPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    +    +  +NP EA  ++ +           ++ ++   RK
Sbjct: 235 TKTKLGNTPVKGFVQRVCNESLVDWFDRNPAEAKIIITKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY KV++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDMEKLRYHKVVL 393


>gi|308153128|dbj|BAJ22153.1| DNA gyrase subunit B [Mycobacterium sp.]
          Length = 421

 Score =  213 bits (543), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 141/427 (33%), Positives = 215/427 (50%), Gaps = 35/427 (8%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
            +NS Y +SGGLHGVG+SVVNALS  L  T+ R    + Q + R +P +   K+    NK
Sbjct: 1   GENSGYNVSGGLHGVGVSVVNALSTRLEATILRDGYEWFQYYDRSVPGTL--KQGGPSNK 58

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-------- 254
            GT I F  DP IF     +D   + +  Q  A+L+  +    + ++  AE+        
Sbjct: 59  TGTTIRFWADPDIFETT-EYDFETVARRLQEMAFLNKGLTIDLTDERVTAEEVVDDVVSD 117

Query: 255 -----------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                                +   F++PGGL  Y++     ++ I   I     +  G 
Sbjct: 118 TAEAPKTADEKAAEAAGPHKVKHRTFHYPGGLVDYVKHINRTKTPIQQSIIDFDGKGPGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRA 354
               VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +    ++ 
Sbjct: 178 ---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRSALTTVVNKYAKDKKLLKEKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
            ++  DD+      ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP E
Sbjct: 235 PNLTGDDIREGLAAVISVKVSDPQFEGQTKTKLGNTEVKSFVQKICNEQLSHWFEANPAE 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   +  ++ RL  RK RE V RK+A     LPGKLADC       +E+++VEGDS
Sbjct: 295 AKTVVNKAVSSAQARLAARKARELVRRKSATDIGGLPGKLADCRSTDPVLSEVYVVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    L
Sbjct: 355 AGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDISKL 414

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 415 RYHKIVL 421


>gi|66474507|gb|AAY46823.1| GyrB [Aeromonas veronii bv. sobria]
          Length = 385

 Score =  213 bits (542), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 146/396 (36%), Positives = 223/396 (56%), Gaps = 16/396 (4%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           G+FD+++Y++SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++     
Sbjct: 1   GEFDDNSYKVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST 60

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
              GT + F P P IF D   F    L K  +  ++L+  V      +++  E       
Sbjct: 61  G-TGTEVRFWPSPAIFSDTL-FHYEILAKRLRELSFLNSGVSIRLQDERDGRE------- 111

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
             F + GG+K +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + 
Sbjct: 112 AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFT 168

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH  G R ALTR +  Y +      K   +   DD+    + ++SV + +P
Sbjct: 169 NNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDP 228

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F+ QTK KLVS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE
Sbjct: 229 KFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARE 288

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKI
Sbjct: 289 LTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKI 348

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           LNV  A  +K+ ++Q++  L+ ALGC         D
Sbjct: 349 LNVEKARFDKMISSQEVGTLITALGCGIGRDQYNPD 384


>gi|83017284|dbj|BAE53560.1| DNA gyrase B [Microbulbifer sp. MBIC06494]
 gi|83017286|dbj|BAE53561.1| DNA gyrase B [Microbulbifer sp. MBIC08243]
          Length = 389

 Score =  213 bits (542), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 147/401 (36%), Positives = 223/401 (55%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           ++TY++SGGLHGVG+SVVNALS EL +T+ R   I  Q +  G+P +PLE      +  G
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSRELKLTIRRGGKIHEQTYHHGVPQAPLEVVGD-SDTTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F+P    F +   F    L K  +  ++L+  V+     ++   E       E + 
Sbjct: 60  TTVHFKPSADTFSNI-EFHFDVLAKRLRELSFLNSGVRIVLKDERSAKE-------EIYE 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   +N++ I+  +      + G     VE A+ W +     I  Y N I 
Sbjct: 112 YEGGLSAFVEFLNQNKTPINKVLHFQSQREDGI---AVEVALQWNDSFQESIFCYTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLAGFRAALTRGLNTYIEREGLGKKDKVNTTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  +   F+ YL++NP EA  ++  +I+ ++ R   RK R    R
Sbjct: 229 QTKDKLVSSEVKPAVEQEMGQHFNDYLLENPQEAKSVVTKMIDAAKAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC Q     +E+++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQQKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++ ++  L+ ALGC   +S++  + LRY  +II
Sbjct: 349 KARFDKMLSSAEVGTLITALGCGIGKSEFNPDKLRYHSIII 389


>gi|82940554|emb|CAJ44285.1| gyrase B protein [Vibrio tapetis]
          Length = 395

 Score =  213 bits (542), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 144/402 (35%), Positives = 220/402 (54%), Gaps = 15/402 (3%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG+SVVNALS ++ +T+ RQ +   Q +  G P +PL        
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSKQVDLTIHRQGSTHQQTYRHGEPDAPLGATGDTEK 60

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             GT I F P  + F +   F    L K  +  ++L+  V      ++E        + +
Sbjct: 61  -TGTIIRFWPSEETFTNVH-FHYEILAKRLRELSFLNSGVSIKLIDERE------EDKMD 112

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F + GG + ++     N++ I  ++F    E++     +VE A+ W +     I  + N
Sbjct: 113 HFCYEGGTQAFVDYLNTNKTPIIQKVFHFDYERED--GISVEVAMQWNDGYQENIFCFTN 170

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I   +GGTH +G R ALTR +  + +      K   +   DD       I+SV + +P+
Sbjct: 171 NIPQRDGGTHLAGFRAALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAIVSVKVPDPK 230

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-RE 437
           F+ QTK KLVS + +  VE+A+ +    +L++NP EA  +   +I+ +  R   RK    
Sbjct: 231 FSSQTKDKLVSSEVKSAVESAMGEKLSEFLIENPSEAKIVCSKIIDAARARDAARKAREM 290

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
             RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKIL
Sbjct: 291 TRRKGALDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKIL 350

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
           NV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +
Sbjct: 351 NVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNI 392


>gi|53148437|dbj|BAD52246.1| DNA gyrase subunit B [Pseudomonas plecoglossicida]
 gi|53148439|dbj|BAD52247.1| DNA gyrase subunit B [Pseudomonas plecoglossicida]
 gi|53148441|dbj|BAD52248.1| DNA gyrase subunit B [Pseudomonas plecoglossicida]
 gi|53148443|dbj|BAD52249.1| DNA gyrase subunit B [Pseudomonas plecoglossicida]
 gi|53148445|dbj|BAD52250.1| DNA gyrase subunit B [Pseudomonas plecoglossicida]
 gi|53148447|dbj|BAD52251.1| DNA gyrase subunit B [Pseudomonas plecoglossicida]
 gi|53148449|dbj|BAD52252.1| DNA gyrase subunit B [Pseudomonas plecoglossicida]
 gi|53148451|dbj|BAD52253.1| DNA gyrase subunit B [Pseudomonas plecoglossicida]
 gi|53148453|dbj|BAD52254.1| DNA gyrase subunit B [Pseudomonas plecoglossicida]
          Length = 391

 Score =  213 bits (542), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 145/402 (36%), Positives = 224/402 (55%), Gaps = 16/402 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS++L +TV R   I+ Q +  G+P +P+          G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGD-SESTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I F+P  + F +   F    L K  +  ++L+  V      ++   E       E F 
Sbjct: 60  THIHFKPSAETFKNIH-FSWDILAKRIRELSFLNSGVGILLKDERSGKE-------EFFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL+ +++    N++ ++S++F    +++      VE A+ W +     +  + N I 
Sbjct: 112 YEGGLRAFVEYLNTNKTPVNSQVFHFNVQRED--GVGVEVALQWNDSFNENLLCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH  G R +LTR +  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 170 QRDGGTHLVGFRSSLTRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    R
Sbjct: 230 QTKDKLVSSEVKTAVEQEMNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV 
Sbjct: 290 KGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIM 541
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIM
Sbjct: 350 KARFDKMISSQEVGTLITALGCGIGREEYNIDKLRYHNIIIM 391


>gi|147917479|gb|ABQ52592.1| gyrase B subunit [Vibrio alginolyticus]
 gi|147917483|gb|ABQ52594.1| gyrase B subunit [Vibrio alginolyticus]
          Length = 390

 Score =  213 bits (542), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 145/400 (36%), Positives = 225/400 (56%), Gaps = 15/400 (3%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K GT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           +I F P  + F +   F    L K  +  ++L+  V      ++E        + + F +
Sbjct: 60  QIRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KHDHFMY 112

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG++ ++     N++ I  +IF   +E++     +VE A+ W +     I  + N I  
Sbjct: 113 EGGIQAFVDHLNTNKTPIIEKIFHFNSERED--GISVEVAMQWNDGFQENIFCFTNNIPQ 170

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ Q
Sbjct: 171 RDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRK 441
           TK KLVS + +  VE+A+ +    +L++NP EA  +   +I+ +  R   RK R    RK
Sbjct: 231 TKDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRK 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  
Sbjct: 291 GALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
           A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 351 ARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIII 390


>gi|295388378|gb|ADG03084.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  213 bits (542), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 148/404 (36%), Positives = 228/404 (56%), Gaps = 15/404 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHG+G+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGMGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+I F P  + F +   F    L K  +  ++L+  V      ++E        +++ F
Sbjct: 60  GTQIRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KQDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ ++Q    N++ I  +IF    E++     +VE A+ W +     I  + N I
Sbjct: 113 MYEGGIQAFVQHLNTNKTPIIEKIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+
Sbjct: 171 PQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +   E+A+ +    +LV+NP EA  +   +I+ +  R   RK R    
Sbjct: 231 SQTKDKLVSSEVKSAFESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLEGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|254169593|gb|ACT64887.1| DNA gyrase B subunit [Shewanella haliotis]
          Length = 390

 Score =  213 bits (542), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 144/401 (35%), Positives = 225/401 (56%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y++SGGLHGVG+SVVNALS++L +T+ R   ++ Q +  G P  P+++  +     G
Sbjct: 1   DHSYKVSGGLHGVGVSVVNALSEKLQLTIRRDGKVYEQFYKHGEPQEPIKEIGEATK-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I F P  + F D   F    L K  +  ++L+  V      +++  +       E F+
Sbjct: 60  TEIRFWPSHETFTDT-EFHYELLAKRIRELSFLNSGVGIRLIDERDNKD-------EFFH 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++    N++ ++ ++F    E++     TVE A+ W +     I  + N I 
Sbjct: 112 YEGGIKAFVEYLNRNKTPVNKDVFHFSQERED--GITVEVAMQWNDGFQESIFCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  Y E      K   +   DD       ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAALTRNLNNYMENEGFNKKGKTNATGDDAREGLTAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +  + YL++NP +A  ++  +I+ +  R   RK R    R
Sbjct: 230 QTKDKLVSSEVKGAVEQTMAEKLNDYLLENPADAKMIVGKIIDAARAREAARKAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  E  RY  +II
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYDPEKTRYHYIII 390


>gi|164516712|emb|CAP48453.1| putative integron gene cassette protein [uncultured bacterium]
          Length = 168

 Score =  213 bits (542), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 83/170 (48%), Positives = 113/170 (66%), Gaps = 4/170 (2%)

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           ALGC TR     ++LRYE++IIMTDADVDGAHIA+LL+T F+QEM +++ Q HL+L  PP
Sbjct: 1   ALGCGTRKDCDPDNLRYERIIIMTDADVDGAHIATLLMTLFFQEMPEMVRQGHLYLARPP 60

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
           L+R+T G KSVYA DE+ + +I     K    K+E+ RFKGLGEM  SQLKET MD   R
Sbjct: 61  LYRLTAGGKSVYAQDEKERTEIENGIFK--GKKVEVGRFKGLGEMNPSQLKETTMDPETR 118

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD--VGT 686
           +L RV +  +       +D + +LMG + + RF FIQ  A+ +D+  +  
Sbjct: 119 SLFRVTLPHEYEDRASVKDLVTRLMGKQPEHRFDFIQANAASLDEEAIDA 168


>gi|66474537|gb|AAY46838.1| GyrB [Aeromonas veronii bv. sobria]
          Length = 385

 Score =  213 bits (542), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 146/396 (36%), Positives = 223/396 (56%), Gaps = 16/396 (4%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           G+FD+++Y++SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++     
Sbjct: 1   GEFDDNSYKVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST 60

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
              GT + F P P IF D   F    L K  +  ++L+  V      +++  E       
Sbjct: 61  G-TGTEVRFWPSPAIFSDTL-FHYEILAKRLRELSFLNSGVSIRLQDERDGRE------- 111

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
             F + GG+K +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + 
Sbjct: 112 AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFT 168

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH  G R ALTR +  Y +      K   +   DD+    + ++SV + +P
Sbjct: 169 NNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDP 228

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F+ QTK KLVS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE
Sbjct: 229 KFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARE 288

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKI
Sbjct: 289 LTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKI 348

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           LNV  A  +K+ ++Q++  L+ ALGC         D
Sbjct: 349 LNVEKARFDKMISSQEVGTLITALGCGIGRDEYNPD 384


>gi|51571555|emb|CAH18944.1| gyrase B [Corallococcus coralloides]
          Length = 392

 Score =  213 bits (542), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 140/404 (34%), Positives = 214/404 (52%), Gaps = 17/404 (4%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y++SGGLHGVG++ VN LS+   V V R   I+ Q ++RG+     ++     +KRGT
Sbjct: 1   GAYKVSGGLHGVGVTCVNFLSEWFKVRVQRAGKIYEQTYARGVSNGSPQEVG-TTDKRGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            I F+PD  +      F+   L +  +  A+L+  +      ++   E         F F
Sbjct: 60  MIHFKPDSMVMETV-DFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD-------FKF 111

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG+ ++++   + +  +  +    K+E++G    ++E A+ W +     I ++ N I T
Sbjct: 112 DGGISSFVEYLNKAKEALHDKPVYIKSEREGV---SLEIAMQWNDGYDERIFTFANNINT 168

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQ 382
            EGG+H SG + ALTR +  YAE     + +      +D       ++SV +  P+F GQ
Sbjct: 169 HEGGSHLSGFKAALTRTLNSYAEKGGVWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQ 228

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRK 441
           TKTKL + + +  VE  + D    +L +NP  A K++  +          R+ +  V RK
Sbjct: 229 TKTKLGNSEVKGLVEQMVNDQLASFLEENPPLAKKVVAKIGDACRARIAARKARETVRRK 288

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC     H +EL+IVEGDSAGGSAKQ R+R NQA+LPLRGKILNV  
Sbjct: 289 GVLDGGGLPGKLADCQSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEK 348

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           A  EK+  + +I+ L+ ALG       Y  E  RY ++I+MTDA
Sbjct: 349 ARFEKMLTSAEIVTLITALGTGIGAEDYDPEKARYHRIILMTDA 392


>gi|58530658|dbj|BAD89283.1| DNA gyrase B [Ferrimonas marina]
 gi|58530660|dbj|BAD89284.1| DNA gyrase B [Ferrimonas marina]
 gi|58530662|dbj|BAD89285.1| DNA gyrase B [Ferrimonas marina]
 gi|58530664|dbj|BAD89286.1| DNA gyrase B [Ferrimonas marina]
          Length = 390

 Score =  213 bits (542), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 152/401 (37%), Positives = 224/401 (55%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALSD+L +T+ RQ  +  Q +  G P +PL+      +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSDKLELTIRRQGHVHEQTYHLGEPEAPLKVVGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I F P P IF D   F    L K  +  ++L+  V      +++  E       E F 
Sbjct: 60  TSIRFWPSPTIFSDVT-FHYDILAKRVRELSFLNSGVSIRLVDERDGKE-------EHFC 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG++ ++     N++ I+  IF   +E++      VE A+ W +     I  + N I 
Sbjct: 112 YEGGIQAFVDFLNTNKTAINQNIFYFNSERED--GTAVEIAMQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R +LTR +  Y +      K   S   DD       ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRASLTRTLNNYMDKEGYSKKAKTSASGDDAREGLTAVISVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE A+ +    YL++NP EA  ++  +I+ +  R   RK R    R
Sbjct: 230 QTKDKLVSSEVKGAVEQAMGEKLAEYLLENPAEAKMVVNKIIDAARAREAARKAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR  QA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQEKDPGLSELYIVEGDSAGGSAKQGRNRKYQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  E  RY  +II
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYDPEKTRYHNIII 390


>gi|295388288|gb|ADG03040.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  213 bits (542), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 149/404 (36%), Positives = 228/404 (56%), Gaps = 15/404 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLH VG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHSVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+I F P  + F +   F    L K  +  ++L+  V      ++E        +++ F
Sbjct: 60  GTQIRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KQDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ ++Q    N++ I   IF    E++     +VE A+ W +     I  + N I
Sbjct: 113 MYEGGIQAFVQHLNTNKTPIIENIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+
Sbjct: 171 PQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE+A+ +    +LV+NP EA  +   +I+ +  R   RK R    
Sbjct: 231 SQTKDKLVSSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 394


>gi|116874214|gb|ABK30796.1| DNA gyrase subunit B [Photorhabdus temperata]
          Length = 367

 Score =  213 bits (542), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 138/377 (36%), Positives = 208/377 (55%), Gaps = 15/377 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS++L + + R   +  Q +  G+P SPL+   +   + GTR+ F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGET-EQTGTRVRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P    F +   F    L K  +  ++L+  V       +   E       + F++ GG+
Sbjct: 60  WPSMDTFSNNTEFQHDILAKRLRELSFLNSGVSIRLLDKRTNIE-------DHFHYKGGI 112

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K +++   +N++ I   +F   TEK       VE A+ W +     I  + N I   +GG
Sbjct: 113 KAFVEFLNKNKTPIHPNVFYFSTEKDSI---GVEVALQWNDGFQENIYCFTNNIPQRDGG 169

Query: 329 THESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH  G R A+TR +  Y +      K  +S   DD     V ++SV + +P+F+ QTK K
Sbjct: 170 THLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDK 229

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIR 445
           LVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+ 
Sbjct: 230 LVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVGKIIDAARAREAARKAREMTRRKGALD 289

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +
Sbjct: 290 LAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 349

Query: 506 KIRNNQQIMDLVQALGC 522
           K+ ++Q++  L+ ALGC
Sbjct: 350 KMLSSQEVATLITALGC 366


>gi|308153168|dbj|BAJ22173.1| DNA gyrase subunit B [Mycobacterium triviale]
          Length = 420

 Score =  213 bits (542), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 134/426 (31%), Positives = 217/426 (50%), Gaps = 36/426 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVG+SVVNALS +L V ++R    + Q +   +P +   K+ +   K G
Sbjct: 1   SDSYAVSGGLHGVGVSVVNALSTKLEVEISRNGHEWYQVYDYSVPGTL--KQGEKTKKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T + F  DP++F     +D   + +  Q  A+L+  +    +  +               
Sbjct: 59  TTVRFWADPEVFETT-EYDFETVSRRLQEMAFLNKGLVINLTDTRVTKAEVVDEVVSEVA 117

Query: 250 ----------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
                       +      ++ +F++PGGL  Y++     ++ I   +     +  G   
Sbjct: 118 DAPKSAEQQAAESAAPQKLKQRKFHYPGGLVDYVKHINRTKTAIHKSVVDFSGKGDGH-- 175

Query: 300 GTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAI 355
             VE A+ W +   +    ++ NTI T EGGTHE G R ALT  + KYA   +    +  
Sbjct: 176 -EVEIAMQWNDGYNKDSVHTFANTINTAEGGTHEEGFRSALTSVVNKYARDRKLLKDKDS 234

Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415
           ++  DD+      ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP EA
Sbjct: 235 NLTGDDIREGLAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQRVCNEQLGHWFESNPAEA 294

Query: 416 TKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSA 474
             ++   +  ++ R+  RK R+ V RK+A     LPGKLADC       +EL++VEGDSA
Sbjct: 295 KLIINKALSSAQARIAARKARDLVRRKSATDLGGLPGKLADCRSTDPTKSELYVVEGDSA 354

Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
           GGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++  E LR
Sbjct: 355 GGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDLEKLR 414

Query: 535 YEKVII 540
           Y K+++
Sbjct: 415 YHKIVL 420


>gi|213423770|ref|ZP_03356750.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 142

 Score =  213 bits (542), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 74/145 (51%), Positives = 98/145 (67%), Gaps = 4/145 (2%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL  LHAGGKF N  Y+ SGGLHGVGIS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117

Query: 161 VVNALSDELHVTVARQNTIFSQKFS 185
           VVNALS  + VTV R   +++  F 
Sbjct: 118 VVNALSKRVEVTVRRDGQVYNIAFE 142


>gi|159161830|gb|ABW95907.1| gyrase B [Xenorhabdus nematophila]
          Length = 379

 Score =  213 bits (542), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 140/389 (35%), Positives = 207/389 (53%), Gaps = 15/389 (3%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y  SGGLHGVG+SVVNALS++L +T+ R   +  Q +  G+P SPL        + GT +
Sbjct: 1   YNPSGGLHGVGVSVVNALSEKLELTIRRDGKVHEQTYHHGVPQSPLNIVGDT-EQTGTTV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P    F     F+   L K  +  ++L+  V       +  AE         F++ G
Sbjct: 60  RFWPSMDTFKINTEFEYDILAKRLRELSFLNSGVSIRLVDKRTNAEDL-------FHYKG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K +++    N++ I   +F   TEK G     VE ++ W +     I  + N I   +
Sbjct: 113 GIKAFVEFLSRNKNPIHPNVFYFSTEKDGI---GVEISMQWNDGFQENIYCFTNNIPQRD 169

Query: 327 GGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH  G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK
Sbjct: 170 GGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDAREGLIAVISVKVPDPKFSSQTK 229

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTA 443
            KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A
Sbjct: 230 DKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVGKIIDAARAREAARKAREMTRRKGA 289

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A 
Sbjct: 290 LDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 349

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREED 532
            +K+ ++Q++  L+ ALGC         D
Sbjct: 350 FDKMLSSQEVATLITALGCGIGRDEYNPD 378


>gi|51571579|emb|CAH18956.1| gyrase B [Corallococcus coralloides]
          Length = 392

 Score =  213 bits (542), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 141/404 (34%), Positives = 217/404 (53%), Gaps = 17/404 (4%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
              ++SGGLHGVG++ VN L++   V + R   +F Q ++RG+P SP  +     +KRGT
Sbjct: 1   GAXKVSGGLHGVGVTCVNFLAEWFKVRIQRNGKVFEQGYARGVPDSPPREVG-TTDKRGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            I F+PDP I      F+   L +  +  A+L+  +      ++   E         F F
Sbjct: 60  MIHFKPDPTIMETA-DFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD-------FKF 111

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG+ ++++   + ++ +  +    K+E++G    ++E A+ W +     I ++ N I T
Sbjct: 112 DGGIASFVEYLNKAKTALHDKPVYIKSEREGV---SLEIAMQWNDGYDERIFTFANNINT 168

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQ 382
            EGG+H SG + ALTR +  YAE     + +      +D       ++SV +  P+F GQ
Sbjct: 169 HEGGSHLSGFKSALTRTLNSYAEKGGQWKDLKETPTGEDAREGLSAVISVKLTNPQFEGQ 228

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRK 441
           TKTKL + + +  VE  + D    +L +NP  A K++  +          R+ +  V RK
Sbjct: 229 TKTKLGNSEVKGLVEQMVNDQLASFLEENPPLAKKVVAKIGDACRARIAARKARETVRRK 288

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC       +EL+IVEGDSAGGSAKQ R+R NQA+LPLRGKILNV  
Sbjct: 289 GVLDGGGLPGKLADCQSRDPXESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEK 348

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           A  EK+ ++ +I+ L+ ALG       Y  E  RY ++I+MTDA
Sbjct: 349 ARFEKMLSSAEIVTLITALGTGIGAEDYDPEKARYHRIILMTDA 392


>gi|28974177|gb|AAO61457.1| gyrase B subunit [Bacillus safensis]
          Length = 378

 Score =  213 bits (541), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 142/387 (36%), Positives = 211/387 (54%), Gaps = 13/387 (3%)

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS  L VTV R   I  Q+F RG+P+  LE   +  +  GT   F PDP+IF + 
Sbjct: 1   SVVNALSTTLDVTVYRDGKIHYQQFKRGVPVGDLEVIGET-DVTGTTTHFVPDPEIFTET 59

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             FD   L    +  A+L+  V       +E  E+        + + GG+K+Y++    +
Sbjct: 60  IEFDYDTLANRVRELAFLTKGVNIIIEDLREGKERRNE-----YCYEGGIKSYVEHLNRS 114

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           + ++  E    + EK G    TVE A+ + +     I S+ N I T EGGTHE+G +  L
Sbjct: 115 KEVVHEEPVYIEGEKDGI---TVEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGL 171

Query: 339 TRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR I  YA      +    ++  +D+      I+S+   +P+F GQTKTKL + +A+   
Sbjct: 172 TRVINDYARKNGVFKDGDANLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTIT 231

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLAD 455
           ++   +  + +L++NP  A K++E  +  +  R+  +K      RK+A+    LPGKLAD
Sbjct: 232 DSLFSEALEKFLLENPDSAKKIVEKGLMAARARMAAKKARELTRRKSALEVSSLPGKLAD 291

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS      +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  
Sbjct: 292 CSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRS 351

Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMT 542
           ++ ALG      +  E  RY K++IMT
Sbjct: 352 MITALGTGIGEDFTLEKARYHKIVIMT 378


>gi|29652765|gb|AAO87352.1| DNA gyrase B [Listeria monocytogenes]
          Length = 189

 Score =  213 bits (541), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 84/185 (45%), Positives = 115/185 (62%), Gaps = 2/185 (1%)

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 7   RKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILN 66

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 67  VEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTL 126

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+K
Sbjct: 127 FYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYK 184

Query: 619 GLGEM 623
           GLGEM
Sbjct: 185 GLGEM 189


>gi|25990061|gb|AAN74970.1| DNA gyrase subunit B [Mesoplasma entomophilum]
          Length = 391

 Score =  213 bits (541), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 151/400 (37%), Positives = 219/400 (54%), Gaps = 14/400 (3%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y+ISGGLHGVG SVVNALS  + V V R+  I  Q FS G       +     N+ GT +
Sbjct: 1   YKISGGLHGVGASVVNALSLYVDVEVKREGKIHHQVFSGGGTQQTEIEIIGETNETGTTV 60

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PDP+IF +   FD   +    +  +YL+  +    +  +       I +  E++FP 
Sbjct: 61  RFKPDPEIFLEGTEFDYETIRNKVKQLSYLNKGLVIELNDLR-------IDKHVEYHFPN 113

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDE 326
           G+  Y++ K E +  I+  IF    +        VE A+ +  E  E   ++ N I T E
Sbjct: 114 GILDYVKEKNETKPKINPSIFYVDDKHDDI---EVEVALQYNAEYQENLITFVNNINTHE 170

Query: 327 GGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTHE GLR +L R I +YAE   T NK A     DD+    V I+S+   +P++ GQTK
Sbjct: 171 GGTHEDGLRQSLVRVINRYAEKVATGNKPAAKYSWDDIKEGMVCIVSIRHTDPQYEGQTK 230

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTA 443
           TKL + DA++ V+  + D F+ +L+++P +A  +++      + R+  ++ RE   RK+A
Sbjct: 231 TKLANPDAKKAVDAVVGDAFEEFLLKSPEDAKAIIDKNANAQKARIAAQRAREETRRKSA 290

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC        EL++VEGDSAGGSAK  RNR  QA+LPLRGK+LNV    
Sbjct: 291 LDTFSLPGKLADCESKDPEIAELYLVEGDSAGGSAKTGRNRRFQAILPLRGKVLNVERVA 350

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTD 543
             +   N +I  +V A+G   +       LRY K++IMTD
Sbjct: 351 EVRAFANNEIKSIVTAIGTGIKEDIDLSKLRYGKIVIMTD 390


>gi|308153116|dbj|BAJ22147.1| DNA gyrase subunit B [Kineococcus aurantiacus]
          Length = 407

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 143/409 (34%), Positives = 203/409 (49%), Gaps = 15/409 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG SVVNALS  L V V RQ   + Q +  G+PL+PLEK  +  ++ G
Sbjct: 1   GGGYAVSGGLHGVGSSVVNALSTRLDVEVRRQGFAWRQSYEHGVPLAPLEK-GEATDETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY--------G 256
           T ITF  D  IF     +    L    Q +A+L+  +      ++   E           
Sbjct: 60  TTITFWADGDIFETT-DYSYETLRTSFQQRAFLNKGLTLTLKDERAHPEDEAAEGSTDEK 118

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PE 314
              +  + +  GL  Y++     +            E +       VE A+ W       
Sbjct: 119 PQREVSYRYDEGLIDYVKHINAQKKNEPLHETVISLEAEDKDKGIAVEIAMQWTTAYSEA 178

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ---NKRAISIISDDLMISAVGILS 371
           + +Y N I T EGGTHE+G R ALT  +  YA   +    K   S+   D+      ++S
Sbjct: 179 VFTYANNINTSEGGTHEAGFRTALTNLVIDYARSAKPAILKENESLDGSDIREGLTAVIS 238

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V + EP+F GQTKTKL +  A+  V++ +R+   H+   NP EA  + +     S  R  
Sbjct: 239 VKLSEPQFEGQTKTKLGNTLARTFVQSQVREHLGHWFQANPKEAWTIAKKAQSASIARQA 298

Query: 432 RRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
            RK RE +RK+ + +  LPGKL DC  N     E+FIVEGDSAGGSA + R+   QA+LP
Sbjct: 299 ARKAREASRKSLLERNSLPGKLKDCQSNNPAECEVFIVEGDSAGGSATRGRDPRTQAILP 358

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +RGKILNV  A  ++   NQ++  L+ A G      +  + LRY K+II
Sbjct: 359 IRGKILNVEKARLDRALGNQEVQALITAFGTGIGEDFNLDKLRYHKIII 407


>gi|308152539|dbj|BAJ22248.1| DNA gyrase subunit B [Rhodococcus sp.]
          Length = 421

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 134/427 (31%), Positives = 212/427 (49%), Gaps = 37/427 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L V + R    + Q ++   P   ++   +   + G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLDVDIKRDGFQWHQTYTDSKPGELVK--GEATKETG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T +TF  DP IF     +    + +  Q  A+L+  +    + ++               
Sbjct: 59  TTVTFWADPNIFETTV-YSFETVARRLQEMAFLNKGLTITLTDERVSDAEVTEEVVSQVA 117

Query: 250 ------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                         A      +   +++PGGL+ Y++     +  I + +     +  G 
Sbjct: 118 DAPKTAEDESAEAEAPAVHKVKTRVYHYPGGLEDYVRHINRTKQPIHNSVVGFTAKGTGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++ 
Sbjct: 178 ---ELEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRSALTATVNKYALDKKLLKEKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             +  DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +
Sbjct: 235 PKLTGDDIREGLAAIISVKVGEPQFEGQTKTKLGNTEVRSFVQKASNEHLSHWFEANPAD 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   +  ++ R+  RK RE V RK+A     LPGKLADC  N    +E++IVEGDS
Sbjct: 295 AKTIVNKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPSKSEIYIVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    L
Sbjct: 355 AGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDIAKL 414

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 415 RYHKIVL 421


>gi|19909561|dbj|BAB86976.1| DNA gyrase subunit B [Novospirillum itersonii]
 gi|19909563|dbj|BAB86977.1| DNA gyrase subunit B [Novospirillum itersonii]
          Length = 392

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 143/401 (35%), Positives = 220/401 (54%), Gaps = 14/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALSD L + + R       +F  G  +  LE+     +++G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSDWLDLRIWRDGWEHYARFEGGDTVKHLERVRPAPDQKG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF   P IF     +    L    +  A+L+  V    +  +     +G P+   F+
Sbjct: 61  TEVTFFASPSIFA-ITEYSFETLEHRLRELAFLNSGVTLVLTDAR-----HGEPKSVTFH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPEITSYCNTIL 323
           + GG++ +++   ++R  +  +      E+ G     ++EW  A+ E       + N I 
Sbjct: 115 YEGGIEAFVKYLDKSRQPLQEKPVVMAGERDGITVDVSLEWTDAYHEN---TLCFTNNIP 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +GLR ALTR +  YA+ +    K  +    DD+      +LSV + +P+F+ 
Sbjct: 172 QKDGGTHLAGLRGALTRTLSAYAQQSGLLKKEKVQPTGDDMREGMTCVLSVKVPDPKFSS 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTK KLVS + +  VEN + +    +L ++P EA +++  V+E +  R   R+ RE   R
Sbjct: 232 QTKEKLVSSEVRTVVENVVAEKLAEWLDEHPSEARRIMGKVVEAAAAREAARRARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC       +ELFIVEGDSAGGSAKQ R+R  QA+LPL+GKILNV 
Sbjct: 292 KGALDISSLPGKLADCQNRDPAQSELFIVEGDSAGGSAKQGRDRGFQAILPLKGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q+I  L+ A+G       +  + LRY KVII
Sbjct: 352 RARFDKMLSSQEIGTLITAMGTGIGADDFNIDKLRYHKVII 392


>gi|308153050|dbj|BAJ22114.1| DNA gyrase subunit B [Mycobacterium obuense]
          Length = 419

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 130/424 (30%), Positives = 210/424 (49%), Gaps = 35/424 (8%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y++SGGLHGVG+SVVNALS  L   + +    + Q + + +P +  +   +   K G+
Sbjct: 2   GAYQVSGGLHGVGVSVVNALSTRLEADIHKDGFEWHQTYDKSVPGTLRK--GEPSKKTGS 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK----------- 254
            I F  DP IF     +D   + +  Q  A+L+  +    + ++   E+           
Sbjct: 60  TIRFWADPDIFETTT-YDFETIARRLQEMAFLNKGLTIELTDERVAPEEVVDDIVSDHAE 118

Query: 255 --------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                             +   F++PGGL  +++     ++ I   +     +  G    
Sbjct: 119 APKSAEEKAAEKAAPQKVKHRVFHYPGGLVDFVKHINRTKTAIQPSVIDFDGKGPGH--- 175

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISI 357
            VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +    ++  ++
Sbjct: 176 EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDPNL 235

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP EA  
Sbjct: 236 TGDDIREGLAAVISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEQLTHWFEANPAEAKT 295

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGG
Sbjct: 296 VVNKAVSSAQARMAARKARELVRRKSATDIGGLPGKLADCRSTDPTKSELYVVEGDSAGG 355

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY 
Sbjct: 356 SAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDLAKLRYH 415

Query: 537 KVII 540
           K+++
Sbjct: 416 KIVL 419


>gi|21238931|dbj|BAB96571.1| DNA gyrase subunit B [Skermania piniformis]
          Length = 418

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 131/424 (30%), Positives = 209/424 (49%), Gaps = 34/424 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS  L V ++R    ++Q++    P      +     K G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTTLEVEISRDGFHWAQQYKDAKPGPL--VQGNPTRKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T + F  DP IF     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTVRFWADPDIFETTT-YNFETVARRLQEMAFLNKGLTITLTDERADEVPEDQLGDTAAA 117

Query: 250 ---------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                    E            +++PGGL+ +++     ++ I + + +   +  G    
Sbjct: 118 PKSQEEEAAEAKAGTPKVRSRVYHYPGGLEDFVRHINRTKTPIHNSVVSFTGKGTGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISI 357
            VE A+ W       + ++ NTI T EGGTHE G R +LT  + KYA   +    +   +
Sbjct: 175 EVEVAMQWNAGYSESVHTFANTINTHEGGTHEEGFRASLTAVVNKYATDKKLIKDKDGKL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  
Sbjct: 235 TGDDIREGLAAIVSVKVAEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKV 294

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGG
Sbjct: 295 IVNKAVSSAQARIAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY 
Sbjct: 355 SAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDIGKLRYH 414

Query: 537 KVII 540
           K+++
Sbjct: 415 KIVL 418


>gi|211927073|dbj|BAG82789.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 419

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 133/424 (31%), Positives = 211/424 (49%), Gaps = 35/424 (8%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y++SGGLHGVG+SVVNALS  L   V      + Q + R +P +   ++ +   K GT
Sbjct: 2   GAYQVSGGLHGVGVSVVNALSSRLEADVRTDGYEWFQTYDRSVPGTL--RQGEKTKKTGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK----------- 254
            I F  DP IF     +D   + +  Q  A+L+  +    + ++   E+           
Sbjct: 60  TIRFWADPDIFETTT-YDFETIARRLQEMAFLNKGLTIELTDERVTPEQVVDEVVSDTAE 118

Query: 255 --------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                             +   F++PGGL  +++     ++ I   +     + +G    
Sbjct: 119 APKSAEEKAAEAVAPHKVKHRVFHYPGGLVDFVKHINRTKNSIQPSVIDFDGKGEGH--- 175

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISI 357
            VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +    ++  ++
Sbjct: 176 EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDANL 235

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP EA  
Sbjct: 236 TGDDIREGLAAVISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEQLTHWFESNPTEAKT 295

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGG
Sbjct: 296 VVNKAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGG 355

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY 
Sbjct: 356 SAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDLAKLRYH 415

Query: 537 KVII 540
           K+++
Sbjct: 416 KIVL 419


>gi|308153104|dbj|BAJ22141.1| DNA gyrase subunit B [Amycolatopsis orientalis]
          Length = 402

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 136/408 (33%), Positives = 216/408 (52%), Gaps = 18/408 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVG+SVVNALS +L   V      + Q ++  IP   LE      +  G
Sbjct: 1   SDSYAVSGGLHGVGVSVVNALSTKLIAEVKYGGRSWRQVYTDQIP-GELEDLGPAED-TG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------ 258
           T ITF  D  IF     ++   + +  Q  A+L+  +      ++   E+          
Sbjct: 59  TTITFWADGGIFETTT-YNFETISRRLQEMAFLNKGLTLSLRDERVADEETEEDASGQAA 117

Query: 259 --EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
             +++ + +PGGL+ +++    ++  I S + + + +  G     VE A+ W     P +
Sbjct: 118 RVKEKTYCYPGGLEDFVKHINGSKDPIHSSVISFEAKGTG---LEVEVAMQWNNGFTPSV 174

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
            ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  DD+      I+S+ 
Sbjct: 175 YTFANTINTHEGGTHEEGFRAALTRVVNAYAREKKLLKEKDANLTGDDVREGLAAIVSIK 234

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + EP+F GQTKTKL + +A+  V+    +    +  +NP E+  ++   I  +  R+  R
Sbjct: 235 LSEPQFEGQTKTKLGNSEAKTFVQQTSNEWLADWFERNPAESKTIINKSISSAHARMAAR 294

Query: 434 KQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           K R+ V RK A+    LPGKL DC        EL+IVEGDSAGGSAK+ R+   QA+LP+
Sbjct: 295 KARDLVRRKGALEIGGLPGKLKDCRSTNPSECELYIVEGDSAGGSAKEGRDSMYQAILPI 354

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           RGKI+NV  A  +++  N ++  L+ ALG     ++  E LRY K+++
Sbjct: 355 RGKIINVEKARIDRVLKNTEVQSLITALGTGIHDEFDLEKLRYHKIVL 402


>gi|51571583|emb|CAH18958.1| gyrase B [Corallococcus coralloides]
          Length = 390

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 140/402 (34%), Positives = 217/402 (53%), Gaps = 17/402 (4%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y++SGGLHGVG++ VN L++   V + R   +F Q ++RG+P SP  +     +KRGT
Sbjct: 1   GAYKVSGGLHGVGVTCVNFLAEWFKVRIQRNGKVFEQGYARGVPDSPPREVG-TTDKRGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            I F+PDP I      F+   L +  +  A+L+  +      ++   E         F F
Sbjct: 60  MIHFKPDPTIMETA-DFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD-------FKF 111

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG+ ++++   + ++ +  +    K+E++G    ++E A+ W +     I ++ N I T
Sbjct: 112 DGGIASFVEYLNKAKTALHDKPVYIKSEREGV---SLEIAMQWNDGYDERIFTFANNINT 168

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQ 382
            EGG+H SG + ALTR +  YAE     + +      +D       ++SV +  P+F GQ
Sbjct: 169 HEGGSHLSGFKSALTRTLNSYAEKGGQWKDLKETPTGEDAREGLSAVISVKLTNPQFEGQ 228

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRK 441
           TKTKL + + +  VE  + D    +L +NP  A K++  +          R+ +  V RK
Sbjct: 229 TKTKLGNSEVKGLVEQMVNDQLASFLEENPPLAKKVVAKIGDACRARIAARKARETVRRK 288

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC     + +EL+IVEGDSAGGSAKQ R+R NQA+LPLRGKILNV  
Sbjct: 289 GVLDGGGLPGKLADCQSRDPNESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEK 348

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
           A  EK+ ++ +I+ L+ ALG       Y  E  RY ++I+MT
Sbjct: 349 ARFEKMLSSAEIVTLITALGTGIGAEDYDPEKARYHRIILMT 390


>gi|119226158|dbj|BAF41058.1| DNA gyrase subunit B [Corynebacterium glutamicum]
 gi|308152501|dbj|BAJ22229.1| DNA gyrase subunit B [Corynebacterium glutamicum]
          Length = 432

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 137/438 (31%), Positives = 211/438 (48%), Gaps = 48/438 (10%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  +   +      + Q F + +P   +E         G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRVEADIKLHGKHWYQNFEKSVPDELIE--GGNARGTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE--- 261
           T I F PD +IF     FD   + +  Q  A+L+  +    + ++   E+  +       
Sbjct: 59  TTIRFWPDAEIFETT-EFDFETISRRLQEMAFLNKGLTITLTDNRATDEELELEALAEQG 117

Query: 262 -----------------------------------EFYFPGGLKTYLQTKLENRSLISSE 286
                                               F++P GL+ Y+     +++ I   
Sbjct: 118 ETATELSLDEIDNETELVEETTDAPKKPKKREKKKIFHYPNGLEDYVHYLNRSKTNIHPS 177

Query: 287 IFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY 345
           I + + +        VE A+ W       + ++ NTI T EGGTHE G R ALT  + +Y
Sbjct: 178 IVSFEAKGDDH---EVEVAMQWNSSYKESVHTFANTINTREGGTHEEGFRSALTSLMNRY 234

Query: 346 AELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDP 403
           A   +   ++  ++  DD       ++SV + +P+F GQTKTKL + + +  V+    + 
Sbjct: 235 AREHKLLKEKEANLTGDDCREGLSAVISVRVGDPQFEGQTKTKLGNTEIKSFVQRMANEH 294

Query: 404 FDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAH 462
             H+L  NP EA  ++   +  ++ RL  RK R+ V RK+A     LPGKLADC      
Sbjct: 295 IGHWLEANPAEAKVIINKAVGSAQARLAARKARDLVRRKSATDLGGLPGKLADCRSKDPE 354

Query: 463 GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
            +EL+IVEGDSAGGSAK  R+   QA+LPLRGKILNV  A  +K+  N ++  ++ ALG 
Sbjct: 355 KSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKILNVEKARLDKVLKNAEVQAIITALGT 414

Query: 523 RTRSQYREEDLRYEKVII 540
               ++    LRY K+++
Sbjct: 415 GIHDEFDINKLRYHKIVL 432


>gi|66474533|gb|AAY46836.1| GyrB [Aeromonas enteropelogenes]
          Length = 385

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 146/396 (36%), Positives = 223/396 (56%), Gaps = 16/396 (4%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           G+FD+++Y++SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++     
Sbjct: 1   GEFDDNSYKVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT 60

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
              GT + F P P IF D   F    L K  +  ++L+  V      +++  E       
Sbjct: 61  -TTGTEVRFWPSPTIFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE------- 111

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
             F + GG+K +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + 
Sbjct: 112 AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFT 168

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH  G R ALTR +  Y +      K   +   D+L    + ++SV + +P
Sbjct: 169 NNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSRKAKSAASGDNLREGLIAVISVKVPDP 228

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F+ QTK KLVS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE
Sbjct: 229 KFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARE 288

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKI
Sbjct: 289 LTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKI 348

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           LNV  A  +K+ ++Q++  L+ ALGC         D
Sbjct: 349 LNVEKARFDKMISSQEVGTLITALGCGIGRDEYNPD 384


>gi|188529753|gb|ACD62563.1| GyrB [Micromonospora sp. 19]
          Length = 393

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 123/399 (30%), Positives = 206/399 (51%), Gaps = 9/399 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS ++ V + +   ++ QK++   P +  +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTKMAVEIHKSGFVWRQKYAHSKPSALEK--GETTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + ++F PDP +F     FD   + +  Q  A+L+  +       +    + G   +  F 
Sbjct: 59  SAVSFWPDPDVFETT-DFDFQTIYRRLQEMAFLNRGITIHLLDTRVPEGEEGKTREVTFR 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    +++ +   +     E++G     +E A+ W E     + ++ N I 
Sbjct: 118 YDGGIADFVRHLNASKNPMHKTVVEFDAEEEG---MALETAMQWNESYGESVYTFANNIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQ
Sbjct: 175 THEGGTHEEGFRSALTSVVNRYGADKKLLKGDEKLSGEDIREGLAAIISVKLTNPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    D    +  +NP EA  +++            ++ ++   RK
Sbjct: 235 TKTKLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKTIIQKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A  +++  N ++  L+ ALG      +  E LRY KV++
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDMEKLRYHKVVL 393


>gi|295315337|gb|ADF97755.1| DNA gyrase subunit B [Bacillus atrophaeus]
          Length = 386

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 146/395 (36%), Positives = 214/395 (54%), Gaps = 13/395 (3%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG SVVNALS  L VTV R   I  Q + RG+P++ +E             
Sbjct: 1   YKVSGGLHGVGASVVNALSTTLDVTVHRDGKIHYQAYERGVPMADVEVIGDTDTTGT-IT 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F PDP+IF +   +D   L    +  A+L+  VK      +E  E+        + + G
Sbjct: 60  HFVPDPEIFTETTEYDYDLLSNRVRELAFLTKGVKITIEDKREEKERKNE-----YCYEG 114

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K+Y++    ++ ++  E    +  K G    TVE A+ + +     I S+ N I T E
Sbjct: 115 GIKSYVEYLNRSKEVVHEEPIYIEGTKDGI---TVEVALQYNDSYTSNIYSFANNINTYE 171

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTHE+G +  LTR I  YA      +    ++  DD+      I+S+   +P+F GQTK
Sbjct: 172 GGTHEAGFKTGLTRVINDYARKKGIFKESDPNLSGDDVREGLTAIISIKHPDPQFEGQTK 231

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
           TKL + +A+   +    +  + +L +NP  A K+++  +  +  R+  +K RE   RK+A
Sbjct: 232 TKLGNSEARTITDALFSEALETFLFENPDSARKVIDKGLMAARARMAAKKARELTRRKSA 291

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A 
Sbjct: 292 LEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKAR 351

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538
            +KI +N ++  ++ ALG      +  E  RY KV
Sbjct: 352 LDKILSNNEVRSMITALGTGIGEDFNLEKARYHKV 386


>gi|148611287|gb|ABQ95832.1| DNA gyrase subunit B [Acidiphilium sp. DX1-13]
          Length = 399

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 137/406 (33%), Positives = 216/406 (53%), Gaps = 15/406 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D ++Y++SGGLHGVG +VVNALS+ + V + R       +F  G  ++PL       +  
Sbjct: 1   DQNSYKVSGGLHGVGAAVVNALSEWMEVRIWRDGKEHLIRFENGDTVAPLAVVGASEHGT 60

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TFRP    F     FD A   +  +  A+L+  +      ++  A      ++  F
Sbjct: 61  GTSVTFRPSAATFTR-TEFDFAIYERRLRELAFLNSGLTINLRDERHSAV-----QEAHF 114

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GGL  ++      ++ + S   T   +        VE+A+AW +     +  + N I
Sbjct: 115 RYEGGLVEFVSWLDRAKTQLFSPPVTA-FKDDAPGGIKVEFALAWNDTYHETMLCFTNNI 173

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
           +  +GGTH +G R ALTR + KYAE    K ++S+  +D+      +LSV + +P+F+ Q
Sbjct: 174 VQRDGGTHLAGFRSALTRVVSKYAESLGKKDSLSLSGEDMREGLTAVLSVKVPDPKFSSQ 233

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK KLVS + Q  V+ A+ D  +H+   +P E   + + V++ +  R   RK RE+ R+ 
Sbjct: 234 TKDKLVSSEVQPLVQAAVADALEHWFETHPKEGRLIAQKVMDAASAREAARKARELTRRK 293

Query: 443 A-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC +     +E+FIVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  
Sbjct: 294 GVLDISTLPGKLADCQERDPAKSEIFIVEGDSAGGSAKQGRDRKTQAILPLKGKILNVER 353

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQ------YREEDLRYEKVIIM 541
           A  +++  + +I  L+ ALG            +    LRY +++I+
Sbjct: 354 ARFDRMLGSAEIGTLITALGTGIGPAEPEQGGFDISKLRYHRIVII 399


>gi|109820269|gb|ABG46471.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820275|gb|ABG46474.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820287|gb|ABG46480.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820355|gb|ABG46514.1| DNA gyrase subunit B [Ralstonia solanacearum]
          Length = 291

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 114/273 (41%), Positives = 168/273 (61%), Gaps = 4/273 (1%)

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           GLR A+TR I KY    +   K  +    DD+      +LSV + EP+F+ QTK KLVS 
Sbjct: 3   GLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCVLSVKVPEPKFSSQTKDKLVSS 62

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRL 449
           + +  VE  +      +L++ P +A  +   ++E +  R   RK RE+ R+   +  + L
Sbjct: 63  EVRLPVEEVVAKALTDFLLETPNDAKIICGKIVEAARAREAARKAREMTRRKGVLDGMGL 122

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +ELFIVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ +
Sbjct: 123 PGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKMLS 182

Query: 510 NQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q+++ L+ A+G          + LRY ++IIMTDADVDG+HI +LLLTFFY++M ++IE
Sbjct: 183 SQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEIIE 242

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           + H+++  PPL++I  G +  Y  D+      L
Sbjct: 243 RGHVYIAQPPLYKIKHGKEERYIKDDNEMAAYL 275


>gi|308153126|dbj|BAJ22152.1| DNA gyrase subunit B [Micromonospora sp.]
          Length = 389

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 121/395 (30%), Positives = 202/395 (51%), Gaps = 9/395 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS ++ V + +   ++ Q+++   P    +   +  ++ G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTKMAVEIHKSGFVWRQQYANSKPSPLEK--GETTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           + + F PD  +F     FD   + +  Q  A+L+  +      ++    + G   +  F 
Sbjct: 59  SAVAFWPDADVFETV-DFDFQTIYRRLQEMAFLNRGLTIHLLDERVPEGEEGKTREVTFC 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++    +++ I   +     E++G    +VE A+ W E     + ++ NTI 
Sbjct: 118 YKGGIADFVRHLNASKTPIHKTVVEFGAEEEG---MSVEIAMQWNESYGESVYTFANTIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQ 382
           T EGGTHE G R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQ
Sbjct: 175 THEGGTHEEGFRAALTSVVNRYGADKKLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRK 441
           TKTKL +   +  V+    +    +  +NP EA  ++ +           ++ ++   RK
Sbjct: 235 TKTKLGNTPVKSFVQRVCNEWLVDWFDRNPAEAKIIITKASQAARARIAAQQARKLARRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           + +    +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  
Sbjct: 295 SLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           A  +++  N ++  L+ ALG      +  E LRY 
Sbjct: 355 ARIDRVLKNNEVQALITALGTGIHDDFDMEKLRYH 389


>gi|62085690|gb|AAX63237.1| DNA gyrase subunit B [Gordonia sputi]
          Length = 424

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 140/430 (32%), Positives = 215/430 (50%), Gaps = 36/430 (8%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+  Y +SGGLHGVGISVVNALS ++ + +      + Q ++   P      +   
Sbjct: 1   GGKFDSDAYAVSGGLHGVGISVVNALSTKVELEINYGGYHWEQTYNYAKPGPL--VQGAA 58

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC------------ 247
             K GT + F  DP+IF     + A  + +  Q  A+L+  +    +             
Sbjct: 59  TRKTGTTVRFWADPEIFETTT-YSAETVARRLQEMAFLNKGLTITLTDRRPQTAAADAVV 117

Query: 248 --DKEIAEKYGI------------PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
             D++ AEK               P    +++P GL  Y++     ++ I   +     +
Sbjct: 118 EGDEDTAEKPKTAEEEAVAPTVTKPRTRTYHYPDGLIDYIKHLNRTKTPIHQSVIGFTAK 177

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350
             G     VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +  
Sbjct: 178 GTGH---EVEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLL 234

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            ++   +  DD+      ++SV + +P+F GQTKTKL + + +  V+    +   H+   
Sbjct: 235 KEKDGKLSGDDIREGLAAVISVKVADPQFEGQTKTKLGNTEVKSFVQKTCNEHLGHWFEA 294

Query: 411 NPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           NP EA  +++  ++ ++ RL  RK RE V RKTA     LPGKLADC  N     E++IV
Sbjct: 295 NPAEAKIIVKKAVDSAQARLAARKARELVRRKTATDIGGLPGKLADCRSNDPTKCEVYIV 354

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           EGDSAGGSAK  R+   QA+LP+RGKI+NV  A  +++  N ++  ++ A G     ++ 
Sbjct: 355 EGDSAGGSAKSGRDSMYQAILPIRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFD 414

Query: 530 EEDLRYEKVI 539
              LRY K++
Sbjct: 415 LAKLRYHKIV 424


>gi|25990063|gb|AAN74971.1| DNA gyrase subunit B [Entomoplasma lucivorax]
          Length = 393

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 153/400 (38%), Positives = 221/400 (55%), Gaps = 12/400 (3%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG SVVNALS  + V + R+   F   FS G             NK GT +
Sbjct: 1   YKVSGGLHGVGASVVNALSLYVDVVIEREGKKFHMLFSDGGTAQTELAIIGESNKTGTTV 60

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PDP+IF +   FD   +    +  AYL+  +K   + ++       I +  +F+FP 
Sbjct: 61  RFKPDPEIFKETVTFDYTTIRNKVKQLAYLNKGLKISLNDER-------INKSVDFHFPN 113

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPEIT-SYCNTILTD 325
           G+  Y++ + E ++ I+  IF    ++ G      VE A+ +  E  E   ++ N I T 
Sbjct: 114 GIVDYIREENETKAKINPTIFYVDGKEAGDEGDIEVEIALQYNSEYNENLITFVNNINTH 173

Query: 326 EGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           EGG HE GLR AL R I +YAE    QNK+      DD+    + ILS+   +P+F GQT
Sbjct: 174 EGGAHEDGLRQALVRIINRYAEKVAQQNKQPQKFSWDDIKEGMICILSIRHTDPQFEGQT 233

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKT 442
           KTKL + DA+R V+  L   F+ +L +NP +A  +L+  +   + R+  ++ RE   RK 
Sbjct: 234 KTKLANPDAKRVVDAILGKSFEEFLFENPNDAKAILDKNVNAQKARIAAQRAREETRRKG 293

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC  N +  +EL++VEGDSAGGSAK  RNR  QA+LPLRGK+LNV   
Sbjct: 294 ALDTFSLPGKLADCESNDSSISELYLVEGDSAGGSAKTGRNRHFQAILPLRGKVLNVERV 353

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
              +   N +I  +V A+G   +       +RY K++IMT
Sbjct: 354 QEVRAFANTEIKSIVTAVGTGIKEDIDLSKIRYGKIVIMT 393


>gi|83308247|emb|CAJ42020.1| gyrase B [Vibrio tapetis]
          Length = 394

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 143/401 (35%), Positives = 219/401 (54%), Gaps = 15/401 (3%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD+++Y++SGGLHGVG+SVVNALS ++ +T+ RQ +   Q +  G P +PL         
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSKQVDLTIHRQGSTHQQTYRHGEPDAPLGVTGDTEK- 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT I F P  + F +   F    L K  +  ++L+  V      ++E        + + 
Sbjct: 60  TGTIIRFWPSEETFTNVH-FHYEILAKRLRELSFLNSGVSIKLIDERE------EDKMDH 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           F + GG + ++     N++ I  ++F    E++     +VE A+ W +     I  + N 
Sbjct: 113 FCYEGGTQAFVDYLNTNKTPIIQKVFHFDYERED--GISVEVAMQWNDGYQENIFCFTNN 170

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R ALTR +  + +      K   +   DD       I+SV + +P+F
Sbjct: 171 IPQRDGGTHLAGFRAALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAIVSVKVPDPKF 230

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REV 438
           + QTK KLVS + +  VE+A+ +    +L++NP EA  +   +I+ +  R   RK     
Sbjct: 231 SSQTKDKLVSSEVKSAVESAMGEKLSEFLIENPSEAKIVCSKIIDAARARDAARKAREMT 290

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILN
Sbjct: 291 RRKGALDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILN 350

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
           V  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +
Sbjct: 351 VEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNI 391


>gi|27901573|dbj|BAC55907.1| DNA gyrase subunit B [Rhodococcus jostii]
 gi|108860567|dbj|BAE95998.1| DNA gyrase B [Rhodococcus jostii]
          Length = 421

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 134/427 (31%), Positives = 213/427 (49%), Gaps = 37/427 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L V + R    ++Q ++   P   ++   +   + G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLDVDIKRDGFRWTQTYTDSKPGELVK--GEPTKETG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------ 258
           T +TF  DP IF     +    + +  Q  A+L+  +    + ++    +          
Sbjct: 59  TTVTFWADPNIFETTV-YSFETVARRLQEMAFLNKGLTITLTDERVSDAEVTEEVVSQVA 117

Query: 259 ---------------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                                +   +++PGGL+ Y++     +  I + +     +  G 
Sbjct: 118 DAPKTAEDESAEAEAPAVHKVKTRVYHYPGGLEDYVRHINRTKQPIHNSVVGFTAKGTGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++ 
Sbjct: 178 ---ELEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRSALTATVNKYALDKKLLKEKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             +  DD+      ILSV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +
Sbjct: 235 PKLTGDDIREGLAAILSVKVGEPQFEGQTKTKLGNTEVRSFVQKASNEHLSHWFEANPAD 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   +  ++ R+  RK RE V RK+A     LPGKLADC  N    +E++IVEGDS
Sbjct: 295 AKTIVNKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPSKSEIYIVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    L
Sbjct: 355 AGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDIAKL 414

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 415 RYHKIVL 421


>gi|189427110|ref|YP_001950209.1| type IIA topoisomerase [Ralstonia phage RSL1]
 gi|189233422|dbj|BAG41779.1| type IIA topoisomerase [Ralstonia phage RSL1]
          Length = 882

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 132/535 (24%), Positives = 222/535 (41%), Gaps = 39/535 (7%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96
                  YD++SI        VR  P MYIGG D   L  +  E++DN  DE +A   + 
Sbjct: 2   TTKKQTKYDSTSIETQRFPHNVRASPAMYIGGVDAYGLWTVTKELLDNGADEFMAQRNDA 61

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPK---------FPNKSTLEIILTTLHAGGKFDNST 147
           + +  D +G   V D+G GIP                    T++ +   LH  GK+ +  
Sbjct: 62  VFLHFDADGSYWVWDHGHGIPQGVKTFKLNLNGKVVTQKMPTMQAVFGELHTSGKYRSEA 121

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR---- 203
           Y +S G HGVG    NA ++   V    +    S KF +G    P+++    +       
Sbjct: 122 YAVSIGSHGVGSKGTNATAEYFDVWTLYEGRWSSIKFKKGELAQPVKECSAPKLPTGKPL 181

Query: 204 --GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             GT I F+PD  IF     F  +  ++     +Y++  +    S  K            
Sbjct: 182 KKGTLIHFKPDASIFSV-KSFPPSMAVEWATVMSYMNPGLSIHLSSKKGAK--------- 231

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
            +    G + Y++ +L               +        V  A    +   +I    N+
Sbjct: 232 TYLSKKGPQEYIEHRLAALKTEGERQMFVHHDD----LSDVVLAFTNYD-GCDIRGMTNS 286

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII------SDDLMISAVGILSVFIR 375
           +   +GG H   +  A+  G+K + +  + K    +         DL    VG+++  + 
Sbjct: 287 VTNGQGGKHVDSVTGAVYAGLKPWIKTKKVKEDGKVKVVPAFRETDLKEGLVGLVNAKLH 346

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           + +F+ Q K +L      +  E A+   F  +  +N   A +L +   + +E + +    
Sbjct: 347 KAQFSSQDKARLTDNRLGKDYEEAITKKFVAFFKENKALAQRLCDRATKLNELKTKFTMS 406

Query: 436 REVNRK-TAIRKLRLPGKLADCSQNIA-HGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
           ++      A+++  LP K A  + +   H  ELF+VEGDSAGGS K AR    QAVLPL+
Sbjct: 407 KKAAATLNAVKRNGLPAKYAAFNSDTKVHDRELFLVEGDSAGGSLKDARLP-YQAVLPLK 465

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           GK+LN       K   + +I++++ A+G  T++      L   K+I + D D DG
Sbjct: 466 GKVLNALKDNKGKALESDEIINILAAIGYDTKAADPLSKLTVGKIICLADPDPDG 520



 Score = 57.9 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 7/123 (5%)

Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK 609
           HI SLLL  FY+ + DL ++  +++ + P F      + V        Q  L++ K    
Sbjct: 701 HINSLLLGLFYKYLPDLFDKGMVYVSAAPEFYSIYKDQLVTGDTLSAVQVKLKKLKAPTS 760

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669
             I     KG GE   + ++  A D   R L++++     + +        K+M    + 
Sbjct: 761 TAIHH--LKGWGEASENLMRVLAADPATRRLIKIKAISHDDKVD-----FVKVMNEDVEY 813

Query: 670 RFK 672
           R +
Sbjct: 814 RRR 816


>gi|58530652|dbj|BAD89280.1| DNA gyrase B [Ferrimonas balearica]
          Length = 390

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 147/401 (36%), Positives = 227/401 (56%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALSD+L +TV RQ  I  Q++S G P++PL+      +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSDKLELTVRRQGHIHEQEYSLGDPVAPLKAVGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I F P  +IF D   F    L K  +  ++L+  V      +++  E       + + 
Sbjct: 60  TTIRFWPSSQIFSDTT-FHYDILAKRLRELSFLNSGVSIRLVDERDAKE-------DHYC 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++   +N++ +  ++F   TE++      VE A+ W +     I  + N I 
Sbjct: 112 YEGGIHAFVEFLNQNKTPVHQQVFHFTTERED--GIGVEVAMQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  Y +      K   S   DD       ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAALTRTLNNYMDKEGYSKKAKTSASGDDAREGLTAVISVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    +L++NP +A  ++  +I+ +  R   RK R    R
Sbjct: 230 QTKDKLVSSEVKTAVEQTMGEQLQDFLLENPGDAKTVVSKIIDAARAREAARKAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR  QA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKYQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ A+GC   R +Y  +  RY  +II
Sbjct: 350 KARFDKMLSSQEVATLITAMGCGIGRDEYNPDKTRYHNIII 390


>gi|83758696|dbj|BAE54519.1| DNA gyrase subunit B [Rhodococcus sp. TCH14]
          Length = 421

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 133/427 (31%), Positives = 213/427 (49%), Gaps = 37/427 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L V + R    ++Q ++   P   ++   +   + G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLDVDIKRDGFRWNQTYTDSKPGELVK--GEATKETG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------ 258
           T +TF  DP IF     +    + +  Q  A+L+  +    + ++    +          
Sbjct: 59  TTVTFWADPNIFETTV-YSFETVARRLQEMAFLNKGLTITLTDERVSDAEVTEEVVSQVA 117

Query: 259 ---------------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                                +   +++PGGL+ Y++     +  I + +     +  G 
Sbjct: 118 DAPKTAEDESAEAGAPAVHKVKTRVYHYPGGLEDYVRHINRTKQPIHNSVVGFTAKGTGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++ 
Sbjct: 178 ---ELEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRSALTATVNKYALDKKLLKEKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             +  DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +
Sbjct: 235 PKLTGDDIREGLAAIISVKVGEPQFEGQTKTKLGNTEVRSFVQKASNEHLSHWFEANPAD 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   +  ++ R+  RK RE V RK+A     LPGKLADC  N    +E++IVEGDS
Sbjct: 295 AKTIVNKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPSKSEIYIVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    L
Sbjct: 355 AGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDIAKL 414

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 415 RYHKIVL 421


>gi|148611308|gb|ABQ95841.1| DNA gyrase subunit B [Acidiphilium sp. SB6]
          Length = 400

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 138/407 (33%), Positives = 216/407 (53%), Gaps = 15/407 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D ++Y++SGGLHGVG +VVNALS+ + V + R       +F  G  ++PL       +  
Sbjct: 1   DQNSYKVSGGLHGVGAAVVNALSEWMEVRIWRDGKEHLIRFENGDTVAPLAVVGASEHGT 60

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
            T +TFRP    F     FD A   +  +  A+L+  +      ++  A      ++  F
Sbjct: 61  RTSVTFRPSAATFTR-TEFDFAIYERRLRELAFLNSGLTINLRDERHSAV-----QEAHF 114

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GGL  ++      ++ + S   T   +        VE+A+AW +     +  + N I
Sbjct: 115 RYEGGLVEFVSWLDRAKTQLFSPPVTA-FKDDAPGGIKVEFALAWNDTYHETMLCFTNNI 173

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
           +  +GGTH +G R ALTR + KYAE    K ++S+  +D+      +LSV + +P+F+ Q
Sbjct: 174 VQRDGGTHLAGFRSALTRVVSKYAESLGKKDSLSLSGEDMREGLTAVLSVKVPDPKFSSQ 233

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK KLVS + Q  V+ A+ D  +H+   +P E   + + V++ +  R   RK RE+ R+ 
Sbjct: 234 TKDKLVSSEVQPLVQAAVADALEHWFETHPKEGRLIAQKVMDAASAREAARKARELTRRK 293

Query: 443 A-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC +     +E+FIVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  
Sbjct: 294 GVLDISTLPGKLADCQERDPAKSEIFIVEGDSAGGSAKQGRDRKTQAILPLKGKILNVER 353

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQ------YREEDLRYEKVIIMT 542
           A  +++  + +I  L+ ALG            +    LRY +++IMT
Sbjct: 354 ARFDRMLGSAEIGTLITALGTGIGPAEPEQGGFDISKLRYHRIVIMT 400


>gi|51571561|emb|CAH18947.1| gyrase B [Corallococcus exiguus]
          Length = 392

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 138/404 (34%), Positives = 214/404 (52%), Gaps = 17/404 (4%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y++SGGLHGVG++ VN LS+   V V R   ++ Q ++RG+     ++     +K GT
Sbjct: 1   GAYKVSGGLHGVGVTCVNFLSEWFKVRVQRAGKVYEQSYARGVANGSPQEVG-TTDKLGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            I F+PD ++      F+   L +  +  A+L+  +      ++   E         F F
Sbjct: 60  TIHFKPDTQVMETV-DFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD-------FKF 111

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG+ ++++   + +  +  +    K+E++G    ++E A+ W +     I ++ N I T
Sbjct: 112 DGGISSFVEYLNKAKEALHDKPVYIKSEREGV---SLEIAMQWNDGYDERIFTFANNINT 168

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQ 382
            EGG+H SG + ALTR +  YAE     + +      +D       ++SV +  P+F GQ
Sbjct: 169 HEGGSHLSGFKAALTRTLNSYAEKGSLWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQ 228

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRK 441
           TKTKL + + +  VE  + D    +L +NP  A K++  +          R+ +  V RK
Sbjct: 229 TKTKLGNSEVKGLVEQMVNDQLASFLEENPPLAKKVVVKIGDACRARLAARKARETVRRK 288

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC     H +EL+IVEGDSAGGSAKQ R+R NQA+LPLRGKILNV  
Sbjct: 289 GVLDGGGLPGKLADCQSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEK 348

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           A  EK+  + +I+ L+ ALG       Y  E  RY ++I+MTDA
Sbjct: 349 ARFEKMLTSAEIVTLITALGTGIGAEDYDPEKARYHRIILMTDA 392


>gi|84873490|gb|ABC67805.1| DNA gyrase subunit b [Vibrio harveyi]
          Length = 391

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 144/401 (35%), Positives = 225/401 (56%), Gaps = 15/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       ++ G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+I F P  + F +   F    L K  +  ++L+  V      ++E        + + F 
Sbjct: 60  TQIRFWPSAETFTNI-EFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KSDHFM 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           F GG++ +++    N++ I  +IF    E++      VE A+ W +     I  + N I 
Sbjct: 113 FEGGIQAFVEHLNTNKTPIIEKIFHFDFERED--GIAVEVAMQWNDGFQENIYCFTNNIP 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ 
Sbjct: 171 QRDGGTHLAGFRAALTRTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSS 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE+++ +    +L++NP EA  +   +I+ +  R   RK R    R
Sbjct: 231 QTKDKLVSSEVKSAVESSMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 291 KGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 351 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIII 391


>gi|83017282|dbj|BAE53559.1| DNA gyrase B [Microbulbifer sp. MBIC08249]
          Length = 389

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 148/401 (36%), Positives = 224/401 (55%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           ++TY++SGGLHGVG+SVVNALS EL +T+ R   I  Q +  G+P +PLE   +  +  G
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSRELKLTIRRAGKIHEQTYHHGVPQAPLEIVGE-SDTTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F+P  + F +   F    L K  +  ++L+  V+     ++   E       E + 
Sbjct: 60  TTVHFKPSAETFNNI-EFHFDILAKRLRELSFLNSGVRIVLKDERSGKE-------EVYE 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  ++    +N++ I+  +      + GT    VE A+ W +     I  Y N I 
Sbjct: 112 YEGGLSAFVAFLNQNKTAINKVLHFQSQREDGT---AVEVALQWNDSFQESIFCYTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLAGFRAALTRGLNSYIEREGLGKKDKVNTTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  +   F  YL++NP EA  ++  +I+ ++ R   RK R    R
Sbjct: 229 QTKDKLVSSEVKTAVEQEMGQHFADYLLENPQEAKSVVIKMIDAAKAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC Q     +E+++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQQKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++ ++  L+ ALGC   +S++  + LRY  +II
Sbjct: 349 KARFDKMLSSAEVGTLITALGCGIGKSEFNPDKLRYHSIII 389


>gi|4001682|dbj|BAA35070.1| DNA gyrase subunit B [Micromonospora aurantiaca]
          Length = 396

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 128/400 (32%), Positives = 208/400 (52%), Gaps = 8/400 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           N  Y +SGGLHGVG+SVVNALS ++ V + +   ++ Q ++   P    +   +  +K G
Sbjct: 1   NKAYAVSGGLHGVGVSVVNALSSKMFVEINKSGNVWRQHYTASKPGPLEK--GETTDKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           + + F PDP +F     FD   + +  Q  A+L+  +    +  + E A++ G P    F
Sbjct: 59  SMVQFWPDPTVFETV-EFDWQTIYRRLQEMAFLNRGLTIKLTDLRTEHADENGEPRTVTF 117

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            +  G+  +++     ++ I   +   + E     R  VE A+ W E     + ++ N I
Sbjct: 118 MYENGIADFVRHLNATKNPIHKTVVEFQAE-DNEARMAVEIAMQWNESYGESVYTFANRI 176

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAG 381
            T EGGTHE G R ALT  + +Y +  +  +   ++  +D+      I+SV +  P+F G
Sbjct: 177 NTHEGGTHEEGFRAALTGVVNRYGKDKKLLKGDQNLSGEDIREGLAAIISVTLANPQFEG 236

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNR 440
           QTKTKL + D +  V+    +    +  +NP EA +++ +           ++ ++   R
Sbjct: 237 QTKTKLGNTDMKSFVQRVANEQLADWFDRNPAEAKQIITKADQAARARIAAQQARKLARR 296

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+ +    +PGKLADC       +ELFIVEGDSAGGSAKQ RN   QA+LP+RGKILNV 
Sbjct: 297 KSLLESGSMPGKLADCQSTDPRESELFIVEGDSAGGSAKQGRNSRIQAILPIRGKILNVE 356

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +++  N ++  L+ ALG      +    LRY K+++
Sbjct: 357 KARIDRVLKNNEVQALITALGTGIHEDFDVAKLRYHKIVL 396


>gi|2196846|gb|AAB80840.1| DNA gyrase beta-subunit [Shewanella sp. DLM-7]
          Length = 419

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 144/430 (33%), Positives = 224/430 (52%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T  H+ G  +        G   +   ++NALS +L +T+ R   +  Q ++ G+P 
Sbjct: 1   EVIMTVPHSWGSLNAKPKTGLCGWLDIRTLLINALSKKLQLTIRRDGKVHEQFYTHGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+++        GT I F P  + F D   F    L K  +  ++L+  V      +++
Sbjct: 61  APIKEIGDATK-TGTEIRFWPSEQTFSDV-EFHFEILAKRLRELSFLNSGVGIPLVDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + E   + GG + ++     N++ ++ ++F    E+      TVE A+ W +
Sbjct: 119 N-------KNEFSKYEGGFRAFVDYLNRNKTPVNKDVFHFMQERDD--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R ALTR +  Y E      K   +   DD      
Sbjct: 170 GYQENIFCFTNNIPQRDGGTHLAGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A   +  +++ + 
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSSEVKAAVEQTMGEKLYEYLLENPADAKFFVGQIVDAAR 289

Query: 428 ERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK R    RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK-VIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC         D    K V+IMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGVIVYTLDKTRGKYVVIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHILTLL 419


>gi|147917469|gb|ABQ52587.1| gyrase B subunit [Vibrio alginolyticus]
 gi|147917475|gb|ABQ52590.1| gyrase B subunit [Vibrio alginolyticus]
          Length = 389

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 145/399 (36%), Positives = 224/399 (56%), Gaps = 15/399 (3%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K GT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQ 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F P  + F +   F    L K  +  ++L+  V      ++E        + + F + 
Sbjct: 60  IRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KHDHFMYE 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG++ ++     N++ I  +IF   +E++     +VE A+ W +     I  + N I   
Sbjct: 113 GGIQAFVDHLNTNKTPIIEKIFHFNSERED--GISVEVAMQWNDGFQENIFCFTNNIPQR 170

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QT
Sbjct: 171 DGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQT 230

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKT 442
           K KLVS + +  VE+A+ +    +L++NP EA  +   +I+ +  R   RK R    RK 
Sbjct: 231 KDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKG 290

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 291 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 350

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
             +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 351 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIII 389


>gi|119226170|dbj|BAF41064.1| DNA gyrase subunit B [Rhodococcus wratislaviensis]
 gi|119226182|dbj|BAF41070.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|211927087|dbj|BAG82796.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 421

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 133/427 (31%), Positives = 213/427 (49%), Gaps = 37/427 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L V + R    ++Q ++   P   ++   +   + G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLDVDIKRDGFQWNQTYTDSKPGELVK--GEATKETG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------ 258
           T +TF  DP IF     +    + +  Q  A+L+  +    + ++    +          
Sbjct: 59  TTVTFWADPNIFETTV-YSFETVARRLQEMAFLNKGLTITLTDERVSDAEVTEEVVSQVA 117

Query: 259 ---------------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                                +   +++PGGL+ Y++     +  I + +     +  G 
Sbjct: 118 DAPKTAEDESAEADAPAVHKVKTRVYHYPGGLEDYVRHINRTKQPIHNSVVGFTAKGTGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++ 
Sbjct: 178 ---ELEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRSALTATVNKYALDKKLLKEKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             +  DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +
Sbjct: 235 PKLTGDDIREGLAAIISVKVGEPQFEGQTKTKLGNTEVRSFVQKASNEHLSHWFEANPAD 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   +  ++ R+  RK RE V RK+A     LPGKLADC  N    +E++IVEGDS
Sbjct: 295 AKTIVNKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPSKSEIYIVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    L
Sbjct: 355 AGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDIAKL 414

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 415 RYHKIVL 421


>gi|308153190|dbj|BAJ22184.1| DNA gyrase subunit B [Corynebacterium callunae]
          Length = 432

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 137/438 (31%), Positives = 212/438 (48%), Gaps = 48/438 (10%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  +   +      + Q F+  +P   +E         G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRVEADIKLHGKHWYQNFTNSVPDELIE--GGNARGTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK---------- 254
           T I F PD +IF     FD   + +  Q  A+L+  +    +  +   ++          
Sbjct: 59  TTIRFWPDAEIFETT-EFDFETISRRLQEMAFLNKGLTITLTDSRATDQELELEALAEQG 117

Query: 255 ----------------------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSE 286
                                           +K+ F++P GL  Y+     ++++I   
Sbjct: 118 ETAPELSLDELDNETELVEEAGDAPKKPKKREKKKVFHYPNGLGDYVNYLNRSKTVIHPS 177

Query: 287 IFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY 345
           I   + + +      VE A+ W       + ++ NTI T EGGTHE G R ALT  + +Y
Sbjct: 178 IVAFEAKGEDH---EVEIAMQWNSSYKESVHTFANTINTHEGGTHEEGFRSALTSLMNRY 234

Query: 346 AELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDP 403
           A   +   ++  ++  DD       I+SV + +P+F GQTKTKL + + +  V+    + 
Sbjct: 235 AREHKLLKEKEANLTGDDCREGLSAIISVRVGDPQFEGQTKTKLGNTEIKSFVQRMTNEH 294

Query: 404 FDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAH 462
             H+L  NP EA  ++   +  ++ R+  RK R+ V RK+A     LPGKLADC      
Sbjct: 295 VGHWLEANPAEAKVIINKAVGSAQARMAARKARDLVRRKSATDLGGLPGKLADCRSKDPE 354

Query: 463 GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
            +EL+IVEGDSAGGSAK  R+   QA+LPLRGKILNV  A  +K+  N ++  ++ ALG 
Sbjct: 355 KSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKILNVEKARLDKVLKNAEVQAIITALGT 414

Query: 523 RTRSQYREEDLRYEKVII 540
               ++    LRY K+++
Sbjct: 415 GIHDEFDINKLRYHKIVL 432


>gi|109820265|gb|ABG46469.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820289|gb|ABG46481.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820291|gb|ABG46482.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820295|gb|ABG46484.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820297|gb|ABG46485.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820301|gb|ABG46487.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820315|gb|ABG46494.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820335|gb|ABG46504.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820341|gb|ABG46507.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820347|gb|ABG46510.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820349|gb|ABG46511.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820351|gb|ABG46512.1| DNA gyrase subunit B [Ralstonia solanacearum]
          Length = 291

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 114/273 (41%), Positives = 168/273 (61%), Gaps = 4/273 (1%)

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           GLR A+TR I KY    +   K  +    DD+      +LSV + EP+F+ QTK KLVS 
Sbjct: 3   GLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCVLSVKVPEPKFSSQTKDKLVSS 62

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRL 449
           + +  VE  +      +L++ P +A  +   ++E +  R   RK RE+ R+   +  + L
Sbjct: 63  EVRLPVEEVVAKALTDFLLETPNDAKIICGKIVEAARAREAARKAREMTRRKGVLDGMGL 122

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +ELFIVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ +
Sbjct: 123 PGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKMLS 182

Query: 510 NQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q+++ L+ A+G          + LRY ++IIMTDADVDG+HI +LLLTFFY++M ++IE
Sbjct: 183 SQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEIIE 242

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           + H+++  PPL++I  G +  Y  D+      L
Sbjct: 243 RGHVYIAQPPLYKIKHGKEERYIKDDNEMAAYL 275


>gi|23336860|ref|ZP_00121997.1| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), B subunit [Bifidobacterium longum DJO10A]
          Length = 191

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 80/185 (43%), Positives = 114/185 (61%), Gaps = 1/185 (0%)

Query: 8   LFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIG 67
           L      + Q  +   + +             A ++Y+AS +R+LEGLE VR+RPGMYIG
Sbjct: 7   LADETSKEEQLKAAAERINNAELTEGELDESMALEHYEASDLRLLEGLEAVRIRPGMYIG 66

Query: 68  GTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNK 127
            T  + LHHL  E++DN++DE +AGYA+ IE+++  +  + VVD+GRGIPV+  P     
Sbjct: 67  STGPRGLHHLVYEIVDNSVDEALAGYASHIEITILPDNGIRVVDDGRGIPVDEVP-GEGV 125

Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187
           S +E ++T LHAGGKF    Y +SGGLHGVGISVVNALS  + + V RQ   ++Q +   
Sbjct: 126 SGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHWTQTYIDQ 185

Query: 188 IPLSP 192
            P +P
Sbjct: 186 HPTAP 190


>gi|82568135|dbj|BAE48502.1| DNA gyrase B [Seinonella peptonophila]
          Length = 389

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 152/400 (38%), Positives = 217/400 (54%), Gaps = 15/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           N  Y+ SGGLHGVG+SVVNALS+ L V V R   I  Q+++RGIP S L+   +      
Sbjct: 1   NGGYKFSGGLHGVGVSVVNALSESLAVEVKRDGKIHRQEYARGIPQSSLQVVGEAEGTG- 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T  TFRPDP+IF +   FDA  L    +  A+L+  ++  +   +   E         + 
Sbjct: 60  TTTTFRPDPEIFKETTIFDATILQNRLRELAFLNAGLRIIFKDLRTEQEAE-------YK 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTIL 323
           + GG+ ++++    NR  + +       E+  T    VE A+ + +     I SY N I 
Sbjct: 113 YDGGISSFVEYLNRNRETLHAPPIYVTGERDTTQ---VEVALQYNDSYSSRILSYANNIH 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G + ALTR I  YA      +    ++  DD+      I+SV I +P+F  
Sbjct: 170 THEGGTHEAGFKSALTRVINDYARRNNLLKENQSNLTGDDVREGLTAIISVKIMDPQFEA 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTK KL + + +   E  L +    YL +NP  A K++   +  S  R   RK RE   R
Sbjct: 230 QTKIKLGNSEVRTITEQLLNEKIQIYLEENPAVAKKVINKAMMASRAREAARKARELTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC+   A  +ELFIVEGDSAGG+AKQ R+R  QA+LPL+GKILNV 
Sbjct: 290 KNALEVSALPGKLADCTSRKADESELFIVEGDSAGGTAKQGRDRMFQAILPLKGKILNVG 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +++ +N +I  ++ ALG      ++ +  RY K+II
Sbjct: 350 KARLDRVLSNDEIRTIITALGTGIGEDFQLDKARYHKIII 389


>gi|317420208|emb|CBW30261.1| gyrase B subunit [Pseudoalteromonas undina]
          Length = 392

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 142/401 (35%), Positives = 226/401 (56%), Gaps = 16/401 (3%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS++L +T+ R+  ++ Q ++ G+P +PL          GT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKLKLTIRREGKLYEQFYTMGVPDAPLAAIGD-SETTGTE 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F P  + F +   F    L K  +  ++L+  V    + ++E        + + F + 
Sbjct: 60  LRFWPSAETFTNL-DFHYDILAKRLRELSFLNSGVSIILNDERE------ENKSDHFKYE 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG++ +++    N++ +   +F    E++     +VE ++ W +     I  + N I   
Sbjct: 113 GGIRAFVEYLNRNKTPVHKGVFHFTHERE-EDGISVEVSMQWNDAFQENIYCFTNNIPQR 171

Query: 326 EGGTHESGLRVALTRGIKKYA----ELTQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
           +GGTH +G R ALTR +  Y        + K   +   DD       ++SV + +P+F+ 
Sbjct: 172 DGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKFSS 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE A+ + F  +L++NP++A  ++  +I+ +  R   RK R    R
Sbjct: 232 QTKDKLVSSEVKSAVEQAMAEKFTEFLLENPMDAKIVVGKIIDAARAREAARKAREMTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +      EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 292 KGAMDLAGLPGKLADCQEKDPAQXELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  E LRY ++II
Sbjct: 352 KARFDKMLSSQEVATLITALGCGIGRDEYNPEKLRYHRIII 392


>gi|58530666|dbj|BAD89287.1| DNA gyrase B [Ferrimonas sp. A3B-64-2]
          Length = 390

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 152/401 (37%), Positives = 224/401 (55%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALSD+L +T+ RQ  +  Q +  G P +PL+      +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSDKLELTIRRQGHVHEQIYHLGEPEAPLKVVGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I F P P IF D   F    L K  +  ++L+  V      +++  E       E F 
Sbjct: 60  TSIRFWPSPTIFSDVT-FHYDILAKRVRELSFLNSGVSIRLVDERDGKE-------EHFC 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG++ ++     N++ I+  IF   +E++      VE A+ W +     I  + N I 
Sbjct: 112 YEGGIQAFVDFLNTNKTAINQNIFYFNSERED--GTAVEIAMQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R +LTR +  Y +      K   S   DD       ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRASLTRTLNNYMDKEGYSKKAKTSASGDDAREGLTAVISVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE A+ +    YL++NP EA  ++  +I+ +  R   RK R    R
Sbjct: 230 QTKDKLVSSEVKGAVEQAMGEKLAEYLLENPAEAKMVVNKIIDAARAREAARKAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR  QA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQEKDPGLSELYIVEGDSAGGSAKQGRNRKYQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  E  RY  +II
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYDPEKTRYHNIII 390


>gi|109820251|gb|ABG46462.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820253|gb|ABG46463.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820255|gb|ABG46464.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820257|gb|ABG46465.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820259|gb|ABG46466.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820261|gb|ABG46467.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820263|gb|ABG46468.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820267|gb|ABG46470.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820273|gb|ABG46473.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820277|gb|ABG46475.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820279|gb|ABG46476.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820281|gb|ABG46477.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820283|gb|ABG46478.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820285|gb|ABG46479.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820293|gb|ABG46483.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820299|gb|ABG46486.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820303|gb|ABG46488.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820305|gb|ABG46489.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820307|gb|ABG46490.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820309|gb|ABG46491.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820311|gb|ABG46492.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820317|gb|ABG46495.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820319|gb|ABG46496.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820323|gb|ABG46498.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820325|gb|ABG46499.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820331|gb|ABG46502.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820333|gb|ABG46503.1| DNA gyrase subunit B [Ralstonia solanacearum]
          Length = 291

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 114/273 (41%), Positives = 168/273 (61%), Gaps = 4/273 (1%)

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           GLR A+TR I KY    +   K  +    DD+      +LSV + EP+F+ QTK KLVS 
Sbjct: 3   GLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLACVLSVKVPEPKFSSQTKDKLVSS 62

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRL 449
           + +  VE  +      +L++ P +A  +   ++E +  R   RK RE+ R+   +  + L
Sbjct: 63  EVRLPVEEVVAKALTDFLLETPNDAKIICGKIVEAARAREAARKAREMTRRKGVLDGMGL 122

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +ELFIVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ +
Sbjct: 123 PGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKMLS 182

Query: 510 NQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q+++ L+ A+G          + LRY ++IIMTDADVDG+HI +LLLTFFY++M ++IE
Sbjct: 183 SQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEIIE 242

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           + H+++  PPL++I  G +  Y  D+      L
Sbjct: 243 RGHVYIAQPPLYKIKHGKEERYIKDDNEMAAYL 275


>gi|95105516|gb|ABF54925.1| DNA gyrase subunit B [Vibrio harveyi]
          Length = 391

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 144/401 (35%), Positives = 226/401 (56%), Gaps = 15/401 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y+++GGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       ++ 
Sbjct: 1   DDNSYKVAGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+I F P  + F +   F    L K  +  ++L+  V      ++E        + + F
Sbjct: 60  GTQIRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KSDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            F GG++ +++    N++ I  +IF    E++     +VE A+ W +     I  + N I
Sbjct: 113 MFEGGIQAFVEHLNTNKTPIIEKIFHFDFERED--GISVEVAMQWNDGFQENIYCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+
Sbjct: 171 PQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE+A+ +    +L++NP EA  +   +I+ +  R   RK R    
Sbjct: 231 SQTKDKLVSSEVKSAVESAMGEKLSEFLIENPAEAKMVCSKIIDAARAREAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNII 391


>gi|78096533|emb|CAJ40941.1| DNA gyrase subunit B [Aeromonas eucrenophila]
 gi|78096535|emb|CAJ40942.1| DNA gyrase subunit B [Aeromonas eucrenophila]
          Length = 386

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 148/397 (37%), Positives = 225/397 (56%), Gaps = 16/397 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++     +  GT + F
Sbjct: 1   VSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRF 60

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P P IF D   +    L K  +  ++L+  V      +++  E         F + GG+
Sbjct: 61  WPSPTIFSDTL-YHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------VHFCYEGGI 112

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GG
Sbjct: 113 KAFVEYLNQNKTPIHQKVFHFSTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGG 169

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH  G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK K
Sbjct: 170 THLVGFRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDK 229

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           LVS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+ 
Sbjct: 230 LVSSEVKTAVEQAMGEKLAEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALD 289

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +
Sbjct: 290 IAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 349

Query: 506 KIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIM 541
           K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIM
Sbjct: 350 KMISSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIM 386


>gi|186920213|gb|ACC95395.1| DNA gyrase B subunit [Gordonia araii]
          Length = 420

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 134/426 (31%), Positives = 214/426 (50%), Gaps = 37/426 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  + + +AR   +++Q + R +P    +   +   + G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRVELEIARDGFVWTQDYERAVPGLLKK--GEPTKRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------ 258
           T   F PD  IF     F A  + +  Q  A+L+  +    + ++   ++          
Sbjct: 59  TTTRFWPDGDIFETTT-FSAETVARRLQEMAFLNKGLTITLTDNRISDDEAIAEADLDGD 117

Query: 259 ---------------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                                    +++P GL  Y++     ++ I S +     + +G 
Sbjct: 118 GTDKAETVKSEEEKKAQAAIVRTRTYHYPDGLVDYIKHLNRTKTPIHSSVIGFSGKGEGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++ 
Sbjct: 178 ---EVEIAMQWNSGYAESVHTFANTINTHEGGTHEEGFRAALTATVNKYAADKKLVKEKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             +  DD+      ++SV + +P+F GQTKTKL + + +  V+ A  +   H+   NP E
Sbjct: 235 GKLTGDDIREGLAAVISVKVSDPQFEGQTKTKLGNTEVKSFVQKACNEHLGHWFEANPAE 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   ++ ++ R+  RK RE V RKTA     LPGKLADC  N     E++IVEGDS
Sbjct: 295 AKTIIRKAVDSAQARIAARKARELVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LP+RGKI+NV  A  +++  N ++  ++ A G     ++  + L
Sbjct: 355 AGGSAKSGRDSMYQAILPIRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDIKKL 414

Query: 534 RYEKVI 539
           RY K++
Sbjct: 415 RYHKIV 420


>gi|126035358|gb|ABN72432.1| gyrase B subunit [Vibrio cholerae]
          Length = 387

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 144/397 (36%), Positives = 222/397 (55%), Gaps = 15/397 (3%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS+++ +T+ R   I SQ +  G+P +PL    +   + GT + 
Sbjct: 1   KVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGET-ERTGTTVR 59

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F P  + F +   F    L K  +  ++L+  V    + ++E  +K      + F + GG
Sbjct: 60  FWPSAQTFTNI-EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEGG 112

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           ++ ++     N++ I  ++F    E++     +VE A+ W +     I  + N I   +G
Sbjct: 113 IQAFVTHLNRNKTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDG 170

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH +G R ALTR +  Y +      K   +   DD       ++SV + +P+F+ QTK 
Sbjct: 171 GTHLAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKD 230

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAI 444
           KLVS + +  VE+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK A+
Sbjct: 231 KLVSSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGAL 290

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  
Sbjct: 291 DLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARF 350

Query: 505 EKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
           +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 351 DKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIII 387


>gi|58530648|dbj|BAD89278.1| DNA gyrase B [Ferrimonas balearica DSM 9799]
          Length = 390

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 146/401 (36%), Positives = 226/401 (56%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALSD+L +TV RQ  I  Q++S G P++PL+      +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSDKLELTVRRQGHIHEQEYSLGDPVAPLKAVGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I F P  +IF D   F    L K  +  ++L+  V      +++  E       + + 
Sbjct: 60  TTIRFWPSSQIFSDTT-FHYDILAKRLRELSFLNSGVSIRLVDERDAKE-------DHYC 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++   +N++ +  ++F    E++      VE A+ W +     I  + N I 
Sbjct: 112 YEGGIHAFVEFLNQNKTPVHQQVFHFXIERED--GIGVEVAMQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  Y +      K   S   DD       ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAALTRTLNNYMDKEGYSKKAKTSASGDDAREGLTAVISVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    +L++NP +A  ++  +I+ +  R   RK R    R
Sbjct: 230 QTKDKLVSSEVKTAVEQTMGEQLQDFLLENPGDAKTVVSKIIDAARAREAARKAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR  QA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKYQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ A+GC   R +Y  +  RY  +II
Sbjct: 350 KARFDKMLSSQEVATLITAMGCGIGRDEYNPDKTRYHNIII 390


>gi|147917471|gb|ABQ52588.1| gyrase B subunit [Vibrio alginolyticus]
          Length = 390

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 145/399 (36%), Positives = 224/399 (56%), Gaps = 15/399 (3%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K GT+
Sbjct: 2   SYKVSGGLHGVGVSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQ 60

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F P  + F +   F    L K  +  ++L+  V      ++E        + + F + 
Sbjct: 61  IRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KHDHFMYE 113

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG++ ++     N++ I  +IF   +E++     +VE A+ W +     I  + N I   
Sbjct: 114 GGIQAFVDHLNTNKTPIIEKIFHFNSERED--GISVEVAMQWNDGFQENIFCFTNNIPQR 171

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QT
Sbjct: 172 DGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQT 231

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKT 442
           K KLVS + +  VE+A+ +    +L++NP EA  +   +I+ +  R   RK R    RK 
Sbjct: 232 KDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKG 291

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 292 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 351

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
             +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 352 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIII 390


>gi|4001684|dbj|BAA35071.1| DNA gyrase subunit B [Micromonospora aurantiaca]
          Length = 386

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 121/392 (30%), Positives = 203/392 (51%), Gaps = 9/392 (2%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS  + V + +   ++ Q++    P    +   +  ++ G+ ++F P
Sbjct: 1   GGLHGVGVSVVNALSTRMAVEIHKDGFVWRQQYHHSKPTPLEK--GEATDRTGSAVSFWP 58

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           DP +F     FD   + +  Q  A+L+  +      ++   ++ G   +  F++ GG+  
Sbjct: 59  DPDVFETV-DFDFHTIYRRLQEMAFLTRGLTIHLLDERVPEDEDGKTREVTFHYEGGIAD 117

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    ++S I   +     E+ G    +VE A+ W E     + ++ N I T EGGTH
Sbjct: 118 FVRHLNASKSPIHKTVVEFGAEETG---MSVEIAMQWNESYGESVYTFANNINTHEGGTH 174

Query: 331 ESGLRVALTRGIKKYAELTQNKRAISI-ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           E G R ALT  + +Y    +  +       +D+      I+SV + +P+F GQTKTKL +
Sbjct: 175 EEGFRAALTSVVNRYGAEKKLLKGDERLSGEDIREGLAAIISVKLTDPQFEGQTKTKLGN 234

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRKTAIRKLR 448
              +  V+    +    +  +NP EA  +++            ++ ++   RK+ +    
Sbjct: 235 TPVKGFVQRVCNESLVDWFDRNPAEAKIIIQKASQAARARIAAQQARKLARRKSLLESGS 294

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++ 
Sbjct: 295 MPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVL 354

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            N ++  L+ ALG      +  E LRY K+++
Sbjct: 355 KNNEVQALITALGTGIHDDFDIEKLRYHKIVL 386


>gi|186920215|gb|ACC95396.1| DNA gyrase B subunit [Gordonia araii]
          Length = 419

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 134/425 (31%), Positives = 213/425 (50%), Gaps = 37/425 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  + + +AR   +++Q + R +P    +   +   + G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRVELEIARDGFVWTQDYERAVPGLLKK--GEPTKRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------ 258
           T   F PD  IF     F A  + +  Q  A+L+  +    + ++   ++          
Sbjct: 59  TTTRFWPDGDIFETTT-FSAETVARRLQEMAFLNKGLTITLTDNRISDDEAIAEADLDGD 117

Query: 259 ---------------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                                    +++P GL  Y++     ++ I S +     + +G 
Sbjct: 118 GTDKAETVKSEEEKKAQAAVVRTRTYHYPDGLVDYIKHLNRTKTPIHSSVIGFSGKGEGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++ 
Sbjct: 178 ---EVEIAMQWNSGYAESVHTFANTINTHEGGTHEEGFRAALTATVNKYAADKKLVKEKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             +  DD+      ++SV + +P+F GQTKTKL + + +  V+ A  +   H+   NP E
Sbjct: 235 GKLTGDDIREGLAAVISVKVSDPQFEGQTKTKLGNTEVKSFVQKACNEHLGHWFEANPAE 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   ++ ++ R+  RK RE V RKTA     LPGKLADC  N     E++IVEGDS
Sbjct: 295 AKTIIRKAVDSAQARIAARKARELVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LP+RGKI+NV  A  +++  N ++  ++ A G     ++  + L
Sbjct: 355 AGGSAKSGRDSMYQAILPIRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDIKKL 414

Query: 534 RYEKV 538
           RY K+
Sbjct: 415 RYHKI 419


>gi|83017270|dbj|BAE53554.1| DNA gyrase B [Microbulbifer sp. MBIC03330]
          Length = 389

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 145/401 (36%), Positives = 220/401 (54%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           ++TY++SGGLHGVG+SVVNALS EL + + R   I  Q +  G+P +PL       +  G
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSKELKLIIRRGGKIHEQIYHHGVPQAPLGIVGD-SDTTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F+P    F +   F    L K  +  ++L+  V+     ++   E       E + 
Sbjct: 60  TTVHFKPSEDTFSNI-EFHFDVLAKRLRELSFLNSGVRIVLKDERSGKE-------EIYE 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   +N++ I+  +        G     VE A+ W +     I  Y N I 
Sbjct: 112 YEGGLSAFVEFLNQNKTPINKVLHFQSQRDDGI---AVEVALQWNDSFQESIFCYTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLAGFRAALTRGLNNYIEKEGLGKKDKVNTTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  +   F+ YL++NP EA  ++  +I+ ++ R   RK R    R
Sbjct: 229 QTKDKLVSSEVKPAVEQEMGHHFNDYLLENPQEAKSVVTKMIDAAKAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC Q     +E+++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQQKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++ ++  L+ ALGC   +S++  + LRY  +II
Sbjct: 349 KARFDKMLSSAEVGTLITALGCGIGKSEFNPDKLRYHSIII 389


>gi|58530650|dbj|BAD89279.1| DNA gyrase B [Ferrimonas balearica]
          Length = 390

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 146/401 (36%), Positives = 226/401 (56%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALSD+L +TV RQ  I  Q++S G P++PL+      +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSDKLELTVRRQGHIHEQEYSLGDPVAPLKAVGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I F P  +IF D   F    L K  +  ++L+  V      +++  E       + + 
Sbjct: 60  TTIRFWPSSQIFSDTT-FHYDILAKRLRELSFLNSGVSIRLVDERDAKE-------DHYC 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++   +N++ +  ++F    E++      VE A+ W +     I  + N I 
Sbjct: 112 YEGGIHAFVEFLNQNKTPVHQQVFHFTIERED--GIGVEVAMQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  Y +      K   S   DD       ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAALTRTLNNYMDKEGYSKKAKTSASGDDAREGLTAVISVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    +L++NP +A  ++  +I+ +  R   RK R    R
Sbjct: 230 QTKDKLVSSEVKTAVEQTMGEQLQDFLLENPGDAKTVVSKIIDAARAREAARKAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR  QA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKYQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ A+GC   R +Y  +  RY  +II
Sbjct: 350 KARFDKMLSSQEVATLITAMGCGIGRDEYNPDKTRYHNIII 390


>gi|229891673|sp|P0C9C2|TOP2_ASFK5 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
          Length = 1192

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 111/650 (17%), Positives = 206/650 (31%), Gaps = 88/650 (13%)

Query: 72  KALHHLFSEVIDNAMDEVIAGYANL-----IEVSLDGNGFLTVVDNGRGIPVENHPKFP- 125
            AL  +F E+I NA D   A +        I++S D  G  +  ++G GIP+  H +   
Sbjct: 52  PALLKIFDELIVNATDHERACHNKTKKVTYIKISFDK-GVFSCENDGPGIPIVKHEQASL 110

Query: 126 ----NKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFS 181
               +    E+      AG   + +   I GG +GVG+ +    S    +T A     + 
Sbjct: 111 IAKRDVYVPEVASCYFLAGTNINKAKDCIKGGTNGVGLKLAMVHSQWAILTTADGAQKYV 170

Query: 182 QKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA-------RLLKMTQSK 234
           Q  ++ +           R    TRI   P  +  G                +       
Sbjct: 171 QHINQRLDNIEPPTITPSREM-FTRIELMPVYQELGYAQPLSETEQADLSAWIYLRACQC 229

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           A   G+  T +  DK  +    +   + +             L      +    T K + 
Sbjct: 230 AAYVGKGTTIYYNDKPCSTSSVMALAKMY------------TLVTAPNSTIYTTTIKADA 277

Query: 295 KGTHRGTVEWAIAWCEENPEITSYCNTI-LTDEGGTHESGLRVALTRGIKKYAELTQNKR 353
           K      ++ A     +  +         +    G H + L+ A+   + K  + T   +
Sbjct: 278 KPYSLHPLQVAAVVSPKFKKFEHVSIINGVNCVKGEHVTFLKKAINEMVVKKFQQTVKDK 337

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
                  D   +   ++   I   E+ GQ K +L   +    V          +L     
Sbjct: 338 NRKTTLRDSCSNIFVVIVGSIPGIEWTGQRKDELSIAEN---VFKTHYSIPSSFLTSMTR 394

Query: 414 EATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
               +L   I +                     +    +  +     A    L   EGDS
Sbjct: 395 SIVDILLQSISK-------------KDNHKQIDVDKYTRARNAGGKKAQDCMLLAAEGDS 441

Query: 474 A----------GGSAKQARNRSNQAVLPLRGKILNVAS--------------AGSEKIRN 509
           A          G S     +     ++ L G I+N                   +E++ N
Sbjct: 442 ALSLLRAGLTLGKSNPSGPSFDFCGMISLGGVIMNACKKVTNITTDSGETIMVRNEQLTN 501

Query: 510 NQQIMDLVQALGCRTRSQYREE----DLRYEKVIIMTDADVDGAH-IASLLLTFFYQEMY 564
           N+ +  +VQ LG      Y+ +     LRY  ++   D D+DG   I  LLL +F+    
Sbjct: 502 NKVLQGIVQVLGLDFNCHYKTQEERAKLRYGCIVACVDQDLDGCGKILGLLLAYFHLFWP 561

Query: 565 DLIEQKHLFLISPPLFRITQGTKS--VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
            LI    +  +  PL R+ +   +  V  + E+      ++          +  +KGL  
Sbjct: 562 QLIVHGFVKRLLTPLIRVYEKGNTVPVEFYYEQEFDAWAKKQTSLANH--TVKYYKGLAA 619

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
               ++K      +K       ++         ++  +   G +++ R +
Sbjct: 620 HDTHEVKSMFKHFDKMVYT-FTLDD------SAKELFHIYFGGESELRKR 662


>gi|157280826|gb|ABV29334.1| gyrase subunit B [Streptomyces sp. AB5A]
          Length = 390

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 134/389 (34%), Positives = 208/389 (53%), Gaps = 7/389 (1%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V V R    ++Q +  G P +PL+K E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTRVAVEVQRDGFRWTQDYKLGAPTAPLQKNEAT-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           T +TF  D  IF     +    L +  Q  A+L+  +    + ++ +  ++ G P    +
Sbjct: 60  TSVTFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLSISLTDERPDHVDEEGKPLSVRY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTI 322
           ++ GG+  ++      +  +          +      ++E A+ W  +  E + S+ NTI
Sbjct: 119 HYEGGISDFVTYLNSRKGELVHPTVIXFDAEDKERMLSLEIAMQWNTQYSEGVYSFANTI 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  + +YA   +   ++  ++  DD+      I+S+ + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTGLVNRYARDKKLLREKDDNLTGDDIREGLTAIISIKLGEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+  + +    +L +NP EA  ++   I+ +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEAETFVQKVVHEHLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPEYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQY 528
             A  +KI  NQ+I  L+ A G      +
Sbjct: 359 EKARIDKILQNQEIQALISAFGTGVHEDF 387


>gi|9628219|ref|NP_042805.1| topoisomerase II [African swine fever virus]
 gi|267149|sp|Q00942|TOP2_ASFB7 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|210654|gb|AAA42735.1| topoisomerase II [African swine fever virus]
 gi|780481|gb|AAA65341.1| topoisomerase II [African swine fever virus]
 gi|162849494|emb|CAN10461.1| Topoisomerase II [African swine fever virus OURT 88/3]
 gi|1097503|prf||2113434DU topoisomerase II
          Length = 1192

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 111/650 (17%), Positives = 211/650 (32%), Gaps = 88/650 (13%)

Query: 72  KALHHLFSEVIDNAMDEVIAGYANL-----IEVSLDGNGFLTVVDNGRGIPVENHPKFP- 125
            AL  +F E+I NA D   A ++       I++S D  G  +  ++G GIP+  H +   
Sbjct: 52  PALLKIFDELIVNATDHERACHSKTKKVTYIKISFDK-GVFSCENDGPGIPIAKHEQASL 110

Query: 126 ----NKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFS 181
               +    E+      AG   + +   I GG +GVG+ +    S    +T A     + 
Sbjct: 111 IAKRDVYVPEVASCFFLAGTNINKAKDCIKGGTNGVGLKLAMVHSQWAILTTADGAQKYV 170

Query: 182 QKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD-------KAGFDAARLLKMTQSK 234
           Q+ ++ + +         R    TRI   P  +  G        +    +A +       
Sbjct: 171 QQINQRLDIIEPPTITPSREM-FTRIELMPVYQELGYAEPLSETEQADLSAWIYLRACQC 229

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           A   G+  T +  DK       +   + +             L +    +    T K + 
Sbjct: 230 AAYVGKGTTIYYNDKPCRTGSVMALAKMY------------TLLSAPNSTIHTATIKADA 277

Query: 295 KGTHRGTVEWAIAWCEENPEITSYCNTI-LTDEGGTHESGLRVALTRGIKKYAELTQNKR 353
           K      ++ A     +  +         +    G H + L+  +   + K  + T   +
Sbjct: 278 KPYSLHPLQVAAVVSPKFKKFEHVSIINGVNCVKGEHVTFLKKTINEMVIKKFQQTIKDK 337

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
                  D   +   ++   I   E+ GQ K +L   +    V          +L     
Sbjct: 338 NRKTTLRDSCSNIFVVIVGSIPGIEWTGQRKDELSIAEN---VFKTHYSIPSSFLTSMTR 394

Query: 414 EATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
               +L   I +                     +    +  +     A    L   EGDS
Sbjct: 395 SIVDILLQSISK-------------KDNHKQVDVDKYTRARNAGGKRAQDCMLLAAEGDS 441

Query: 474 A----------GGSAKQARNRSNQAVLPLRGKILNVAS--------------AGSEKIRN 509
           A          G S     +     ++ L G I+N                   +E++ N
Sbjct: 442 ALSLLRTGLTLGKSNPSGPSFDFCGMISLGGVIMNACKKVTNITTDSGETIMVRNEQLTN 501

Query: 510 NQQIMDLVQALGCRTRSQYREE----DLRYEKVIIMTDADVDGAH-IASLLLTFFYQEMY 564
           N+ +  +VQ LG      Y+ +     LRY  ++   D D+DG   I  LLL +F+    
Sbjct: 502 NKVLQGIVQVLGLDFNCHYKTQEERAKLRYGCIVACVDQDLDGCGKILGLLLAYFHLFWP 561

Query: 565 DLIEQKHLFLISPPLFRITQGTKS--VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
            LI    +  +  PL R+ +  K+  V  + E+      ++          +  +KGL  
Sbjct: 562 QLIIHGFVKRLLTPLIRVYEKGKTMPVEFYYEQEFDAWAKKQTSLVNH--TVKYYKGLAA 619

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
               ++K      +        ++         ++  +   G +++ R +
Sbjct: 620 HDTHEVKSMFKHFDNMVYT-FTLDD------SAKELFHIYFGGESELRKR 662


>gi|6729170|dbj|BAA89718.1| DNA gyrase subunit B [Actinoplanes philippinensis]
          Length = 396

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 132/400 (33%), Positives = 208/400 (52%), Gaps = 8/400 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG+SVVNALS  + V + +    + QK+   IP   ++   +  +K G
Sbjct: 1   GQAYKVSGGLHGVGVSVVNALSTRMAVAIQKDGFWWRQKYDYSIPGELVK--GEPTDKLG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           + + F PDP IF     FD   + +  Q  A+L+  +   ++ ++ E A++ G P +  F
Sbjct: 59  STVQFWPDPDIFETV-EFDYQTIYRRLQEMAFLNRALTINYTDERAEAADENGEPRRVTF 117

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            +  G+  +++     +S I   +   + E        VE A+ W E     + ++ N I
Sbjct: 118 MYEDGIADFVRHLNATKSAIHKTVIQFEAE-DNDAGMGVEVAMQWNESYGESVYTFANRI 176

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAG 381
            T EGGTHE G R ALT  + KY    +  K    +  +D+      I+SV +REP+F G
Sbjct: 177 NTHEGGTHEEGFRAALTTIVNKYGIEKKFLKGDQKLSGEDIREGLAAIISVTLREPQFEG 236

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNR 440
           QTKTKL + D +  V+    +    +  +NP +A  ++ +           ++ ++   R
Sbjct: 237 QTKTKLGNTDMKSFVQKVANEQLADWFDRNPADAKLIITKADQAARARIAAQQARKLARR 296

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+ +    +PGKLADC       TELFIVEGDSAGGSAK  R    QA+LP+RGKILNV 
Sbjct: 297 KSLLESGSMPGKLADCQSTDPRETELFIVEGDSAGGSAKSGRESRIQAILPIRGKILNVE 356

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +++  N ++  L+ A+G     ++    LRY K+I+
Sbjct: 357 KARIDRVLKNNEVQALITAMGTGIHDEFDISKLRYHKIIL 396


>gi|109820226|gb|ABG46460.1| DNA gyrase subunit B [Ralstonia mannitolilytica]
          Length = 291

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 114/275 (41%), Positives = 169/275 (61%), Gaps = 4/275 (1%)

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +GLR A+TR I KY    +   K  +    DD+      +LSV + EP+F+ QTK KLV
Sbjct: 1   MTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCVLSVKVPEPKFSSQTKDKLV 60

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKL 447
           S + +  VE  +      +L++ P +A  +   ++E +  R   RK RE+ R+   +  +
Sbjct: 61  SSEVRLPVEEVVAKALTDFLLETPNDAKIICGKIVEAARAREAARKAREMTRRKGVLDGM 120

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +ELFIVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+
Sbjct: 121 GLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKM 180

Query: 508 RNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
            ++Q+++ L+ A+G          + LRY ++IIMTDADVDG+HI +LLLTFFY++M ++
Sbjct: 181 LSSQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEI 240

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           IE+ H+++  PPL++I  G +  Y  D+      L
Sbjct: 241 IERGHVYIAQPPLYKIKHGKEERYIKDDNEMAAYL 275


>gi|308153052|dbj|BAJ22115.1| DNA gyrase subunit B [Arthrobacter nicotianae]
          Length = 412

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 136/413 (32%), Positives = 209/413 (50%), Gaps = 19/413 (4%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           S Y +SGGLHGVGISVVNALS++++  V RQ   +   F+ G        K +     GT
Sbjct: 1   SGYAVSGGLHGVGISVVNALSEKVNTIVRRQGHAWRIGFANGGHTVQELTKGEETELTGT 60

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-------------EIA 252
             TF PDP+IF     FD   L    Q  A+L+  ++   + ++             EI 
Sbjct: 61  SQTFYPDPEIFETT-EFDFETLRARFQQMAFLNKGLRITLTDERVQEIEEPEAEVEEEIE 119

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG-TVEWAIAWCEE 311
            +   P   ++ +  GL  Y++     + +          E +   RG ++E A+ W   
Sbjct: 120 NQVVKPRTVDYLYKDGLLDYVKHLNAAKKIELVHDEVIAFESEDAARGISLEIAMQWTSA 179

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVG 368
               + +Y NTI T EGGTHE G R ALT  + +YA   +   ++  ++  +D       
Sbjct: 180 YAESVHTYANTINTHEGGTHEEGFRAALTGLLNRYARDNKILREKDDNLTGEDAREGLTA 239

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           ++SV + EP+F GQTKTKL +  A+  V+  + +    +  +NP  A  ++      S+ 
Sbjct: 240 VISVKLSEPQFEGQTKTKLGNSIARGFVQGVVNEELGDWFERNPNVARDIIRKAQLASQA 299

Query: 429 RLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
           RL  RK R+  R+ + +    +PGKL+DCS       E+FIVEGDSAGGSAK+ R+   Q
Sbjct: 300 RLAARKARDNARRKSPMESFGMPGKLSDCSSKNPSECEVFIVEGDSAGGSAKRGRDPHTQ 359

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A+LPLRGKILNV  A  ++   N ++  ++ A G     ++    LRY K+++
Sbjct: 360 AILPLRGKILNVERARLDRALGNAEVQAMITAFGTGIGEEFDMAKLRYHKIVL 412


>gi|19912135|dbj|BAB88379.1| DNA gyrase subunit B [Chitinophaga pinensis]
          Length = 394

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 150/397 (37%), Positives = 224/397 (56%), Gaps = 10/397 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+S VNALSD+LHVTV R+  +F Q++ RG+P   + +     +  GT + F
Sbjct: 1   VSGGLHGVGVSCVNALSDKLHVTVRREGKLFEQEYQRGVPQYAVREIG-TSDSTGTTVHF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +PD +IF +   ++   L    +  AYL+ ++K   + D+E  E  G    E FY  GG+
Sbjct: 60  KPDNEIFKETI-YNREILAGRLRELAYLNRKIKITLTDDREKDE-AGNSVTETFYSEGGI 117

Query: 270 KTYLQTKLEN--RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
             ++Q    N  R+ +  +    +     +    VE A+ + +     I SY N I T E
Sbjct: 118 IEFVQMLDRNGRRNGLLPDPIFIEAH-DASSNVAVEVAVIYNDSFSENIFSYVNNINTIE 176

Query: 327 GGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R A+TR  K Y +  +   K  I +  DD       I+SV + EP+F GQTK
Sbjct: 177 GGTHVAGFRRAITRIFKSYGDKNKMFEKTKIEVTGDDFREGLSAIISVKVPEPQFEGQTK 236

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA- 443
           TKL + D    V++++    D YL ++P EA  ++  V+  ++ R   RK R++ ++ + 
Sbjct: 237 TKLGNSDVMGVVDSSVAAVLDAYLEEHPREAKIIINKVVLAAQAREAARKARQMVQRKSV 296

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADCS+N     EL++VEGDSAGG+AKQ RNRS QA+LPLRGKILNV  A 
Sbjct: 297 LSGSGLPGKLADCSENDPEKCELYLVEGDSAGGTAKQGRNRSFQAILPLRGKILNVEKAM 356

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             KI  N++I ++  ALG    ++  ++ L   K+  
Sbjct: 357 EHKIYENEEIKNIFTALGVTIGTEEDDKALNLSKLRY 393


>gi|308153154|dbj|BAJ22166.1| DNA gyrase subunit B [Mycobacterium abscessus]
          Length = 419

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 134/425 (31%), Positives = 214/425 (50%), Gaps = 35/425 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS +L V + R    + Q ++R  P +  +       K G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTKLEVEILRDGFEWQQVYTRSEPGTLQK--GAATKKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK---------- 254
           T + F  DP+IF     +D   + +  Q +A+L+  +    + ++    +          
Sbjct: 59  TTVRFWADPEIFETTT-YDFETVARRLQEQAFLNKGLTIKLTDERVSDSEVTDEVVSDTA 117

Query: 255 ---------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
                              +   F++P GL  +++     +S I + I     + +G   
Sbjct: 118 EAPKNAEEQAAESSAPHKVKNRVFHYPDGLVDFVKHINRTKSAIHTTIVDFSGKGEGH-- 175

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAIS 356
             VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +    ++  +
Sbjct: 176 -EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKEKKLLKEKDSN 234

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           +  DD+      ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A 
Sbjct: 235 LTGDDIREGLAAVISVKVGEPQFEGQTKTKLGNTEVKSFVQKVCNEQLQHWFDSNPADAK 294

Query: 417 KLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAG
Sbjct: 295 TVVNKAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAG 354

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           GSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY
Sbjct: 355 GSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIAKLRY 414

Query: 536 EKVII 540
            K+++
Sbjct: 415 HKIVL 419


>gi|126035350|gb|ABN72428.1| gyrase B subunit [Vibrio cholerae]
          Length = 385

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 143/395 (36%), Positives = 220/395 (55%), Gaps = 15/395 (3%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS+++ +T+ R   I SQ +  G+P +PL    +   + GT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGET-ERTGTTV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F    L K  +  ++L+  V    + ++E  +K      + F + G
Sbjct: 60  RFWPSAQTFTNI-EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G++ ++     N++ I  ++F    E++     +VE A+ W +     I  + N I   +
Sbjct: 113 GIQAFVTHLNRNKTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRD 170

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R ALTR +  Y +      K   +   DD       ++SV + +P+F+ QTK
Sbjct: 171 GGTHLAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTK 230

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTA 443
            KLVS + +  VE+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK A
Sbjct: 231 DKLVSSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGA 290

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A 
Sbjct: 291 LDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 350

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537
            +K+ ++Q++  L+ ALGC   R +Y  + LRY  
Sbjct: 351 FDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHN 385


>gi|109820249|gb|ABG46461.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820329|gb|ABG46501.1| DNA gyrase subunit B [Ralstonia solanacearum]
          Length = 291

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 114/273 (41%), Positives = 168/273 (61%), Gaps = 4/273 (1%)

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           GLR A+TR I KY    +   K  +    DD+      +LSV + EP+F+ QTK KLVS 
Sbjct: 3   GLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCVLSVKVPEPKFSSQTKDKLVSS 62

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRL 449
           + +  VE  +      +L++ P +A  +   ++E +  R   RK RE+ R+   +  + L
Sbjct: 63  EVRLPVEEVVAKALADFLLETPNDAKIICGKIVEAARAREAARKAREMTRRKGVLDGMGL 122

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +ELFIVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ +
Sbjct: 123 PGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKMLS 182

Query: 510 NQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q+++ L+ A+G          + LRY ++IIMTDADVDG+HI +LLLTFFY++M ++IE
Sbjct: 183 SQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEIIE 242

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           + H+++  PPL++I  G +  Y  D+      L
Sbjct: 243 RGHVYIAQPPLYKIKHGKEERYIKDDVEMAAYL 275


>gi|211927047|dbj|BAG82776.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 430

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 139/436 (31%), Positives = 214/436 (49%), Gaps = 46/436 (10%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  +   V R   ++ Q F+  +P     K+ K     G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTHMETEVKRDGFLWRQDFTNAVPAEL--KQVKKARGTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC----------------- 247
           T+  F PDP+IF     FD   + K  Q  A+L+  +    +                  
Sbjct: 59  TKQRFWPDPEIFETTV-FDFDTVAKRLQEMAFLNKGLTITLTDQRATEEEIEIEAIAEAG 117

Query: 248 -------------------DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
                              ++  A+     +K+ F++P GL+ Y+    ++++ I   I 
Sbjct: 118 DVAESASLDEVDSQVDAAEEESSAKGKKKEKKKTFFYPNGLEDYVAHLNKSKTPIHPSII 177

Query: 289 TGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
               +        VE A+ W     + + ++ NTI T EGGTHE G R ALT  + +YA 
Sbjct: 178 GFDAKGDDH---EVEVAMQWNSGYSQSVHTFANTINTFEGGTHEEGFRAALTSLMNRYAR 234

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
             +    +  ++  DD       ++SV + +P+F GQTKTKL + + +  V+  + +   
Sbjct: 235 EHKLLKDKEANLTGDDCREGLAAVISVKVGDPQFEGQTKTKLGNTEVKGFVQRMVNEHVT 294

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +   NP EA  ++   +  +  R+  RK R+ V RK+A     LPGKLADC       +
Sbjct: 295 DWFDANPAEAKTIVNKAVSSAHARVAARKARDLVRRKSATDLGGLPGKLADCRSKDPVRS 354

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           EL+IVEGDSAGGSAK  R+   QA+LPLRGKILNV  A  +K+  N ++  ++ ALG   
Sbjct: 355 ELYIVEGDSAGGSAKAGRDSMYQAILPLRGKILNVEKARLDKVLKNNEVQAIITALGTGI 414

Query: 525 RSQYREEDLRYEKVII 540
             ++    LRY K+++
Sbjct: 415 HDEFDINKLRYHKIVL 430


>gi|126035346|gb|ABN72426.1| gyrase B subunit [Vibrio cholerae]
          Length = 386

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 143/396 (36%), Positives = 221/396 (55%), Gaps = 15/396 (3%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS+++ +T+ R   I SQ +  G+P +PL    +   + GT + 
Sbjct: 1   KVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGET-ERTGTTVR 59

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F P  + F +   F    L K  +  ++L+  V    + ++E  +K      + F + GG
Sbjct: 60  FWPSAQTFTNI-EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEGG 112

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           ++ ++     N++ I  ++F    E++     +VE A+ W +     I  + N I   +G
Sbjct: 113 IQAFVTHLNRNKTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDG 170

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH +G R ALTR +  Y +      K   +   DD       ++SV + +P+F+ QTK 
Sbjct: 171 GTHLAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKD 230

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAI 444
           KLVS + +  VE+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK A+
Sbjct: 231 KLVSSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGAL 290

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  
Sbjct: 291 DLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARF 350

Query: 505 EKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
           +K+ ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 351 DKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNII 386


>gi|119226154|dbj|BAF41056.1| DNA gyrase subunit B [Rhodococcus ruber]
 gi|211927095|dbj|BAG82800.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|308152463|dbj|BAJ22210.1| DNA gyrase subunit B [Rhodococcus rhodochrous]
          Length = 420

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 133/426 (31%), Positives = 212/426 (49%), Gaps = 36/426 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS +L V + R    + Q +    P + ++   +     G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTKLEVEIDRDGYHWEQTYQSSKPGTLVK--GEPTRATG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK---------- 254
           T + F  DP IF     ++   + +  Q  A+L+  +    + ++   E+          
Sbjct: 59  TTVRFWADPDIFETTT-YNFETVARRLQEMAFLNKGLTITLTDERVAPEEVTDEVVSELA 117

Query: 255 ----------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH 298
                               +   +++PGGL+ Y++     +  I + +     +  G  
Sbjct: 118 EAPKKAEEQEQAEIEQQHKVKVRVYHYPGGLEDYVRHINRTKQPIHNSVVGFTAKGTGH- 176

Query: 299 RGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAI 355
              +E A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +     +  
Sbjct: 177 --ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLLKDKDP 234

Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415
           ++  DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+L  NP +A
Sbjct: 235 NLTGDDIREGLAAIISVKVGEPQFEGQTKTKLGNTEVKSFVQKACNEHLSHWLEANPADA 294

Query: 416 TKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSA 474
             ++   +  ++ R+  RK RE V RK+A     LPGKLADC  N    +E++IVEGDSA
Sbjct: 295 KTIVTKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPSKSEIYIVEGDSA 354

Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
           GGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LR
Sbjct: 355 GGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQAIITAFGTGIHDEFDISKLR 414

Query: 535 YEKVII 540
           Y K+++
Sbjct: 415 YHKIVL 420


>gi|147917467|gb|ABQ52586.1| gyrase B subunit [Vibrio alginolyticus]
          Length = 389

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 144/398 (36%), Positives = 223/398 (56%), Gaps = 15/398 (3%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K GT+
Sbjct: 2   SYKVSGGLHGVGVSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQ 60

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F P  + F +   F    L K  +  ++L+  V      ++E        + + F + 
Sbjct: 61  IRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KHDHFMYE 113

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG++ ++     N++ I  +IF   +E++     +VE A+ W +     I  + N I   
Sbjct: 114 GGIQAFVDHLNTNKTPIIEKIFHFNSERED--GISVEVAMQWNDGFQENIFCFTNNIPQR 171

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QT
Sbjct: 172 DGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQT 231

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKT 442
           K KLVS + +  VE+A+ +    +L++NP EA  +   +I+ +  R   RK R    RK 
Sbjct: 232 KDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKG 291

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 292 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 351

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
             +K+ ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 352 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNII 389


>gi|27530819|dbj|BAC54057.1| DNA gyrase subunit B [Rhodococcus koreensis]
          Length = 421

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 133/427 (31%), Positives = 213/427 (49%), Gaps = 37/427 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L V + R    ++Q ++   P   ++   +   + G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLDVDIKRDGFRWNQTYTDSKPGELVK--GEATKETG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------ 258
           T +TF  DP IF     +    + +  Q  A+L+  +    + ++    +          
Sbjct: 59  TTVTFWADPNIFETTV-YSFETVARRLQEMAFLNKGLTITLTDERVSDAEVTEEVVSQVA 117

Query: 259 ---------------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                                +   +++PGGL+ Y++     +  I + +     +  G 
Sbjct: 118 DAPKSAEDEHAEADAPAVHKVKTRVYHYPGGLEDYVRHINRTKQPIHNSVVGFTAKGTGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++ 
Sbjct: 178 ---ELEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRSALTATVNKYALDKKLLKEKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             +  DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +
Sbjct: 235 PKLTGDDIREGLAAIISVKVGEPQFEGQTKTKLGNTEVRSFVQKASNEHLSHWFEANPAD 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   +  ++ R+  RK RE V RK+A     LPGKLADC  N    +E++IVEGDS
Sbjct: 295 AKTIVNKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPSKSEIYIVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    L
Sbjct: 355 AGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDIAKL 414

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 415 RYHKIVL 421


>gi|531257|dbj|BAA07144.1| DNA gyrase B subunit [Pseudomonas putida]
          Length = 389

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 143/400 (35%), Positives = 221/400 (55%), Gaps = 16/400 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS++L +TV R   I+ Q +  G+P +P+          G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGD-SETTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I F+P  + F +   F    L K  +  ++L+  V      ++   E       E F 
Sbjct: 60  THIHFKPSAETFKNIH-FSWDILAKRIRELSFLNSGVGILLKDERSGKE-------EFFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL+ +++    N++ ++S++F    ++       VE A+ W +     +  + N I 
Sbjct: 112 YEGGLRAFVEYLNTNKTPVNSQVFHFNVQRDD--GVGVEVALQWNDSFNENLLCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH  G R +LTR +  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 170 QRDGGTHLVGFRSSLTRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    R
Sbjct: 230 QTKDKLVSSEVKTAVEQEMNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV 
Sbjct: 290 KGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 350 KARFDKMISSQEVGTLITALGCGIGREEYNIDKLRYHNII 389


>gi|162849321|emb|CAN10212.1| Topoisomerase II [African swine fever virus Benin 97/1]
          Length = 1192

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 111/650 (17%), Positives = 211/650 (32%), Gaps = 88/650 (13%)

Query: 72  KALHHLFSEVIDNAMDEVIAGYANL-----IEVSLDGNGFLTVVDNGRGIPVENHPKFP- 125
            AL  +F E+I NA D   A ++       I++S D  G  +  ++G GIP+  H +   
Sbjct: 52  PALLKIFDELIVNATDHERACHSKTKKVTYIKISFDK-GVFSCENDGPGIPIAKHEQASL 110

Query: 126 ----NKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFS 181
               +    E+      AG   + +   I GG +GVG+ +    S    +T A     + 
Sbjct: 111 IAKRDVYVPEVASCFFLAGTNINKAKDCIKGGTNGVGLKLAMVHSQWAILTTADGAQKYV 170

Query: 182 QKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD-------KAGFDAARLLKMTQSK 234
           Q+ ++ + +         R    TRI   P  +  G        +    +A +       
Sbjct: 171 QQINQRLDIIEPPTITPSREM-FTRIELMPVYQELGYAEPLSETEQADLSAWIYLRACQC 229

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           A   G+  T +  DK       +   + +             L +    +    T K + 
Sbjct: 230 AAYVGKGTTIYYNDKPCRTGSVMALAKMY------------TLLSAPNSTIHTATIKADA 277

Query: 295 KGTHRGTVEWAIAWCEENPEITSYCNTI-LTDEGGTHESGLRVALTRGIKKYAELTQNKR 353
           K      ++ A     +  +         +    G H + L+  +   + K  + T   +
Sbjct: 278 KPYSLHPLQVAAVVSPKFKKFEHVSIINGVNCVKGEHVTFLKKTINEMVIKKFQQTIKDK 337

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
                  D   +   ++   I   E+ GQ K +L   +    V          +L     
Sbjct: 338 NRKTTLRDSCSNIFVVIVGSIPGIEWTGQRKDELSIAEN---VFKTHYSIPSSFLTSMTR 394

Query: 414 EATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
               +L   I +                     +    +  +     A    L   EGDS
Sbjct: 395 SIVDILLQSISK-------------KDNHKQVDVDKYTRARNAGGKRAQDCMLLAAEGDS 441

Query: 474 A----------GGSAKQARNRSNQAVLPLRGKILNVAS--------------AGSEKIRN 509
           A          G S     +     ++ L G I+N                   +E++ N
Sbjct: 442 ALSLLRTGLTLGKSNPSGPSFDFCGMISLGGVIMNACKKVTNITTDSGETIMVRNEQLTN 501

Query: 510 NQQIMDLVQALGCRTRSQYREE----DLRYEKVIIMTDADVDGAH-IASLLLTFFYQEMY 564
           N+ +  +VQ LG      Y+ +     LRY  ++   D D+DG   I  LLL +F+    
Sbjct: 502 NKVLQGIVQVLGLDFNCHYKTQEERAKLRYGCIVACVDQDLDGCGKILGLLLAYFHLFWP 561

Query: 565 DLIEQKHLFLISPPLFRITQGTKS--VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
            LI    +  +  PL R+ +  K+  V  + E+      ++          +  +KGL  
Sbjct: 562 QLIIHGFVKRLLTPLIRVYEKGKTMPVEFYYEQEFDAWAKKQTSLVNH--TVKYYKGLAA 619

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
               ++K      +        ++         ++  +   G +++ R +
Sbjct: 620 HDTHEVKSMFKHFDNMVYT-FTLDD------SAKELFHIYFGGESELRKR 662


>gi|109820363|gb|ABG46518.1| DNA gyrase subunit B [Ralstonia solanacearum]
          Length = 291

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 114/273 (41%), Positives = 168/273 (61%), Gaps = 4/273 (1%)

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           GLR A+TR I KY    +   K  +    DD+      +LSV + EP+F+ QTK KLVS 
Sbjct: 3   GLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCVLSVKVPEPKFSSQTKDKLVSS 62

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRL 449
           + +  VE  +      +L++ P +A  +   ++E +  R   RK RE+ R+   +  + L
Sbjct: 63  EVRLPVEEVVAKALTDFLLETPNDAKIICGKIVEAARAREAARKAREMTRRKGVLDGMGL 122

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +ELFIVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ +
Sbjct: 123 PGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKMLS 182

Query: 510 NQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q+++ L+ A+G          + LRY ++IIMTDADVDG+HI +LLLTFFY++M ++IE
Sbjct: 183 SQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEIIE 242

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           + H+++  PPL++I  G +  Y  D+      L
Sbjct: 243 RGHVYIAQPPLYKIKHGKEERYIKDDVEMAAYL 275


>gi|294847490|gb|ADF43755.1| DNA gyrase subunit B [Nocardia asiatica]
          Length = 414

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 133/420 (31%), Positives = 210/420 (50%), Gaps = 32/420 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L   + R    +SQ +    P    +   +   K G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSSRLEAEIDRDGYHWSQTYKDSTPGKLAQ--GEPTKKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T I F  DP+IF     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTIRFWADPEIFETTT-YNFETVARRLQEMAFLNKGLTIKLTDERVSDSDVTDEVVSETA 117

Query: 250 -------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
                  E A      +   +++PGGL+ +++     +  I + +     +  G     +
Sbjct: 118 EAPKHADESAPAEHKVKTRTYHYPGGLEDFVRHINRTKQPIHNSVVGFTGKGTGH---EL 174

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359
           E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +   ++  ++  
Sbjct: 175 EVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLTG 234

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD+      I+SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  ++
Sbjct: 235 DDIREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIV 294

Query: 420 EWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
              +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGSA
Sbjct: 295 NKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSA 354

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538
           K  R+   QA+LP+RGKI+NV  A  +K+  N ++  ++ A G     ++    LRY K+
Sbjct: 355 KSGRDSMYQAILPIRGKIINVEKARIDKVLKNNEVQSIITAFGTGIHDEFDISKLRYHKI 414


>gi|27530799|dbj|BAC54047.1| DNA gyrase subunit B [Gordonia polyisoprenivorans]
          Length = 424

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 137/429 (31%), Positives = 214/429 (49%), Gaps = 38/429 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS ++ V +      +S+ F+   P   ++   +   K G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTKVEVEIDVDGFHWSETFTDSKPDGLVK--GEPTRKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC----------------- 247
           T + F PD  IF +   F+A  + +  Q  A+L+  +    +                  
Sbjct: 59  TTVRFWPDASIFTETTSFNAETVARRLQEMAFLNKGLTITLTDRRPKAVEAPGDPNGEGE 118

Query: 248 ------------DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
                       D+E A     P+   +++P GL  Y++     ++ I   +     +  
Sbjct: 119 EGTTETAEEIKSDEEKAAAATKPKTRTYHYPDGLIDYIKHLNRTKNPIHKSVIGFTGKGT 178

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W       + ++ NTI T EGGTHE G R ALTR +  YA   +   +
Sbjct: 179 GH---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTRVVNSYAREKKLLKE 235

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
           +  ++  DD+      ++SV + +P+F GQTKTKL + + +  V  A  +  +H+   NP
Sbjct: 236 KDDNLTGDDIREGLAAVISVKVSDPQFEGQTKTKLGNTEVKSFVLKASGEHIEHWFEANP 295

Query: 413 IEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
            EA  ++   +E +  R   RK RE V RK+A     LPGKLADC  N     E+++VEG
Sbjct: 296 AEAKIIINKAVESAHARQAARKARELVRRKSATDIGGLPGKLADCRSNDPSKCEIYLVEG 355

Query: 472 DSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE 531
           DSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++   
Sbjct: 356 DSAGGSAKTGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDLA 415

Query: 532 DLRYEKVII 540
            LRY K+++
Sbjct: 416 KLRYHKIVL 424


>gi|148793356|gb|ABR12742.1| DNA gyrase beta subunit [Photobacterium indicum]
          Length = 389

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 146/399 (36%), Positives = 227/399 (56%), Gaps = 15/399 (3%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS+++ +T+ R  +I  Q +  G+P  PLE   +  +K GT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSEKVELTINRHGSIHHQIYHHGVPDKPLEAIGET-DKTGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           RI F P    F +   F    L K  +  ++L+  V      ++E        +++ F +
Sbjct: 60  RIRFWPSEDTFTNVV-FHYEILAKRLRELSFLNSGVSIRLIDERE------EGKQDHFMY 112

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG+K +++    N++ I S++F    E++     +VE A+ W +     I  + N I  
Sbjct: 113 EGGIKAFVEHLNRNKTPIHSKVFHFDFERED--GISVEVAMQWNDGFQEGIYCFTNNIPQ 170

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GG+H +G R ALTR +  + +      K   S   DD       ++SV + +P+F+ Q
Sbjct: 171 RDGGSHLAGFRGALTRTLNTFMDKEGYSKKEKTSTSGDDAREGLTAVVSVKVPDPKFSSQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRK 441
           TK KLVS + +  VE+A+ +    +L++NP +A  +   +I+ S  R   RK R    RK
Sbjct: 231 TKDKLVSSEVKPAVESAMNEKLSEFLLENPSDAKIVCSKIIDASRAREAARKAREMTRRK 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  
Sbjct: 291 GALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
           A  +K+ ++Q++  L+ A+GC   R +Y  + LRY  +I
Sbjct: 351 ARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHNII 389


>gi|109820357|gb|ABG46515.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820359|gb|ABG46516.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820361|gb|ABG46517.1| DNA gyrase subunit B [Ralstonia solanacearum]
          Length = 291

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 114/273 (41%), Positives = 168/273 (61%), Gaps = 4/273 (1%)

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           GLR A+TR I KY    +   K  +    DD+      +LSV + EP+F+ QTK KLVS 
Sbjct: 3   GLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCVLSVKVPEPKFSSQTKDKLVSS 62

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRL 449
           + +  VE  +    + +L++ P +A  +   ++E +  R   RK RE+ R+   +  + L
Sbjct: 63  EVRLPVEEIVSKVLNDFLLETPNDAKIICGKIVEAARAREAARKAREMTRRKGVLDGMGL 122

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +ELFIVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ +
Sbjct: 123 PGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKMLS 182

Query: 510 NQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q+++ L+ A+G          + LRY ++IIMTDADVDG+HI +LLLTFFY++M ++IE
Sbjct: 183 SQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEIIE 242

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           + H+++  PPL++I  G    Y  D+      L
Sbjct: 243 RGHVYIAQPPLYKIKHGKDERYIKDDNEMAAYL 275


>gi|109820353|gb|ABG46513.1| DNA gyrase subunit B [Ralstonia solanacearum]
          Length = 291

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 114/275 (41%), Positives = 169/275 (61%), Gaps = 4/275 (1%)

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +GLR A+TR I KY    +   K  +    DD+      +LSV + EP+F+ QTK KLV
Sbjct: 1   MTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCVLSVKVPEPKFSSQTKDKLV 60

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKL 447
           S + +  VE  +      +L++ P +A  +   ++E +  R   RK RE+ R+   +  +
Sbjct: 61  SSEVRLPVEEVVAKALADFLLETPNDAKIICGKIVEAARAREAARKAREMTRRKGVLDGM 120

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +ELFIVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+
Sbjct: 121 GLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKM 180

Query: 508 RNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
            ++Q+++ L+ A+G          + LRY ++IIMTDADVDG+HI +LLLTFFY++M ++
Sbjct: 181 LSSQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEI 240

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           IE+ H+++  PPL++I  G +  Y  D+      L
Sbjct: 241 IERGHVYIAQPPLYKIKHGKEERYIKDDVEMAAYL 275


>gi|86169581|gb|ABC87030.1| DNA gyrase subunit B [Weissella halotolerans]
          Length = 394

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 139/399 (34%), Positives = 208/399 (52%), Gaps = 14/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-- 202
              Y++SGGLHGVG SVVNALS  L VTV R    +S KF+RG  +  ++          
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTFLDVTVVRDGQAYSMKFARGHVVQEMQVTTAEGQDIS 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
           RGT + F PDP IF +   FD   L    +  A+L+  ++   +  +        P    
Sbjct: 61  RGTIVHFLPDPDIFRETTEFDIKTLTNRVRELAFLNKGLRISITDRR-----PAEPVVNS 115

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNT 321
           F++ GG+K Y++    ++ ++  +    +  + G     VE ++ + ++    + S+ N 
Sbjct: 116 FHYEGGIKEYVEYLDVHKDVLFKDPVYVEGAENGI---EVEVSLQYTDDYHINMMSFTNN 172

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEF 379
           I T EGGTHE+G   ALTR I  YA      +        +D+      I+SV   +P+F
Sbjct: 173 IHTYEGGTHETGFEAALTRVINDYARKHGQLKENDEALTGEDVREGLTAIVSVKHPDPQF 232

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN 439
            GQTKTKL + DA+  VE    + F  ++++NP  A +++E  +  S+ R   ++ RE  
Sbjct: 233 EGQTKTKLGNSDARTAVERTFSETFARFMMENPDVAKQIVEKGMLASQARRAAKRAREAT 292

Query: 440 -RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            +K+ +    LPGKLAD +      +ELFIVEGDSAGGSAKQ R R  QA+LP+RGKILN
Sbjct: 293 RKKSGLEISNLPGKLADNTSKDPKISELFIVEGDSAGGSAKQGRERLTQAILPIRGKILN 352

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           V  A  ++I  N +I  +  A+G      +  E   Y K
Sbjct: 353 VEKASLDRILANDEIRSIFTAMGTGFGEDFDVEKANYHK 391


>gi|78096537|emb|CAJ40943.1| DNA gyrase subunit B [Aeromonas encheleia]
          Length = 386

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 147/397 (37%), Positives = 225/397 (56%), Gaps = 16/397 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++     +  G+ + F
Sbjct: 1   VSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGSEVRF 60

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P P IF D   +    L K  +  ++L+  V      +++  E         F + GG+
Sbjct: 61  WPSPTIFTDTL-YHYEILAKRLRELSFLNSGVSIRLEDERDGRE-------MHFCYEGGI 112

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GG
Sbjct: 113 KAFVEYLNQNKTPIHPKVFHFSTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGG 169

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH  G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK K
Sbjct: 170 THLVGFRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDK 229

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           LVS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+ 
Sbjct: 230 LVSSEVKTAVEQAMGEKLGEFLLENPSDAKIVVNKIIDAARAREAARKARELTRRKGALD 289

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +
Sbjct: 290 IAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 349

Query: 506 KIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIM 541
           K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIM
Sbjct: 350 KMISSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIM 386


>gi|19909669|dbj|BAB87030.1| DNA gyrase subunit B [Halorhodospira halophila]
          Length = 389

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 135/401 (33%), Positives = 222/401 (55%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+ L + + R   +  Q+++ G P++ L+   +   + G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSERLRLVIERDGKVHVQEYADGAPVTSLKVVGET-EQTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           TRITF+P  +    +  ++   L K  +  ++L+  V+     ++   E       + F 
Sbjct: 60  TRITFKPS-EAVFTEVQYNYDILAKRFRELSFLNPGVRIVLKDERTEKE-------DVFE 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG++ +++    N++ +   +F     + G     V+ A+ W +     I  + N I 
Sbjct: 112 YTGGIRAFVEHLNRNKTPLHPTVFYVTAWRDGV---GVDVAMQWNDSYQENIFCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  Y E     + +      +D+      ++SV   +P+F+ 
Sbjct: 169 QRDGGTHLAGFRGALTRTVNGYLETEGYLKKLKSTPSGEDVREGLTAVVSVKAPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE+ L +    +L ++P EA  + E VI+ S  R   RK R    R
Sbjct: 229 QTKDKLVSSEVKGIVESLLSESLQTFLAEHPPEARAIAERVIQASRAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +E+++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV 
Sbjct: 289 KDALDIAGLPGKLADCQERDPAKSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++ ++  L+ ALGC   R  +  + LRY ++II
Sbjct: 349 KARFDKMLSSAEVGTLITALGCGIGRDDFDPDKLRYHRIII 389


>gi|297614608|gb|ADI48606.1| DNA gyrase subunit B [Shewanella sp. KJW23]
          Length = 387

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 143/398 (35%), Positives = 223/398 (56%), Gaps = 16/398 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS++L +T+ R   ++ Q +  G P  P+++  +     GT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKLQLTIRRDGKVYEQFYKHGEPQEPIKEIGEATK-TGTE 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F P  + F D   F    L K  +  ++L+  V      +++  +       E F++ 
Sbjct: 60  IRFWPSHETFTDT-EFHYELLAKRIRELSFLNSGVGIRLIDERDNKD-------EFFHYE 111

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+K +++    N++ ++ ++F    E++     TVE A+ W +     I  + N I   
Sbjct: 112 GGIKAFVEYLNRNKTPVNKDVFHFSQERED--GITVEVAMQWNDGFQESIFCFTNNIPQR 169

Query: 326 EGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R ALTR +  Y E      K   +   DD       ++SV + +P+F+ QT
Sbjct: 170 DGGTHLAGFRAALTRNLNNYMENEGFNKKGKTNATGDDAREGLTAVVSVKVPDPKFSSQT 229

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKT 442
           K KLVS + +  VE  + +  + YL++NP +A  ++  +I+ +  R   RK R    RK 
Sbjct: 230 KDKLVSSEVKGAVEQTMGEKLNDYLLENPADAKMIVGKIIDAARAREAARKAREMTRRKG 289

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 ALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 349

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
             +K+ ++Q++  L+ ALGC   R +Y  E  RY  +I
Sbjct: 350 RFDKMLSSQEVATLITALGCGIGRDEYDPEKTRYHYII 387


>gi|290794989|gb|ADD64513.1| DNA gyrase B [Vibrio tasmaniensis]
          Length = 392

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 147/402 (36%), Positives = 222/402 (55%), Gaps = 15/402 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +S G P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT I F P  + F +   F    L K  +  ++L+  V       +E        + + F
Sbjct: 60  GTEIRFWPSEETFTNI-EFHYDILAKRLRELSFLNSGVSIKLIDKRE------EDKMDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ +++    N++ I  +IF   +E+      TVE A+ W +     I  + N I
Sbjct: 113 EYEGGIQAFVEHLNTNKTPIIQKIFHFDSERDD--GITVEVAMQWNDGYQENIYCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GG H +G R ALTR +  + +      K   S   DD       I+SV + +P+F+
Sbjct: 171 PQRDGGAHLAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVN 439
            QTK KLVS + +  VE+ + +    +L++NP EA  +   +I+ +  R   RK      
Sbjct: 231 SQTKDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIII 392


>gi|259018162|gb|ACV89673.1| DNA gyrase subunit B [Nocardia elegans]
          Length = 413

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 131/419 (31%), Positives = 214/419 (51%), Gaps = 32/419 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS  +   + R    +SQ++    P   ++   +  ++ G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSRMVTEIDRDGFHWSQEYKDAKPGKLVK--GEPTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T   F  DP +F     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTQRFWADPDVFETTT-YNFETISRRLQEMAFLNKGLTITLTDERVSDAEVTDEVVSETA 117

Query: 250 ---EIAEKYGIPEKE----EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
              +  E    PE +     +++PGGL+ +++     +  I + + +  ++  G     +
Sbjct: 118 EAPKHDEGAATPEHKVKTRTYHYPGGLEDFVKHINRTKQPIHNTVVSFTSKGTGH---EL 174

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359
           E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +   ++  ++  
Sbjct: 175 EVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLTG 234

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD+      I+SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  ++
Sbjct: 235 DDIREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIV 294

Query: 420 EWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
           +  +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGSA
Sbjct: 295 QKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSA 354

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           K  R+   QA+LPLRGKI+NV  A  +K+  N ++  ++ A G     ++    LRY K
Sbjct: 355 KSGRDSMYQAILPLRGKIINVEKARIDKVLKNNEVQSIITAFGTGIHDEFDISKLRYHK 413


>gi|259018128|gb|ACV89656.1| DNA gyrase subunit B [Nocardia paucivorans]
          Length = 417

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 136/423 (32%), Positives = 212/423 (50%), Gaps = 34/423 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L   V R    +SQ +    P      + +   + G
Sbjct: 1   SESYAVSGGLHGVGISVVNALSTRLEAEVKRDGYHWSQSYKDATPGKL--IQGEPTRETG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T I F PDP+IF     F+   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTIRFWPDPEIFETTT-FNFETVARRLQEMAFLNKGLTIVLTDERVGDTDVTDEVVSETA 117

Query: 250 ---------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                    E A      +   +++PGGL+ +++     ++ I + +        G    
Sbjct: 118 EAPKHAEDGEQAPAEPKVKTRTYHYPGGLEDFVRHINRTKTPIHNSVVAFTGRGTGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SI 357
            +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++
Sbjct: 175 ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKEKKLLKEKDGNL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  
Sbjct: 235 TGDDIREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKT 294

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           +++  +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGG
Sbjct: 295 IVQKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +K+  N ++  ++ A G     ++    LRY 
Sbjct: 355 SAKSGRDSMYQAILPLRGKIINVEKARIDKVLKNNEVQAIITAFGTGIHDEFDISKLRYH 414

Query: 537 KVI 539
           K++
Sbjct: 415 KIV 417


>gi|6729166|dbj|BAA89716.1| DNA gyrase subunit B [Actinoplanes cyaneus]
          Length = 396

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 132/400 (33%), Positives = 211/400 (52%), Gaps = 8/400 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           N  Y++SGGLHGVG+SVVNALS  + V + ++  ++ Q+++  IP   ++   +  +K G
Sbjct: 1   NQAYKVSGGLHGVGVSVVNALSTRMAVEIHKKGFVWRQQYNLSIPTELIK--GESTDKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           + + F PDP IF     FD   + +  Q  A+L+  +   ++  +    ++ G P K  F
Sbjct: 59  STVQFWPDPNIFETV-EFDYQTIYRRLQEMAFLNRALTINFTDSRPGFEDENGEPRKVTF 117

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            +  G+  +++     ++ I   +    TE        VE A+ W E     + ++ N I
Sbjct: 118 MYSDGIADFVRHLNATKNAIHKTVIQFSTEDD-EAGMGVEIAMQWNESYGESVYTFANRI 176

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAG 381
            T EGGTHE G R ALT  + KY    +  K    +  +D+      I+SV +REP+F G
Sbjct: 177 NTHEGGTHEEGFRSALTTIVNKYGIEKKFLKGDQKLSGEDIREGLAAIISVTLREPQFEG 236

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNR 440
           QTKTKL + D +  V+    +    +  +NP +A  ++ +           ++ ++   R
Sbjct: 237 QTKTKLGNTDMKSFVQRVANEQLADWFDRNPADAKLIITKADQAARARIAAQQARKLARR 296

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+ +    +PGKLADC       TELFIVEGDSAGGSAKQ R+   QA+LP+RGKILNV 
Sbjct: 297 KSLLESGSMPGKLADCQSTDPRETELFIVEGDSAGGSAKQGRSSKYQAILPIRGKILNVE 356

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +++  N ++  L+ A+G     ++    LRY K+I+
Sbjct: 357 KARIDRVLKNNEVQALITAMGTGIHDEFDISRLRYHKIIL 396


>gi|83853999|gb|ABC47937.1| gyrase B subunit [Vibrio cholerae O1 biovar El Tor]
          Length = 385

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 142/395 (35%), Positives = 218/395 (55%), Gaps = 15/395 (3%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G+P +PL        + GT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDT-ERTGTTV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F    L K  +  ++L+  V      ++E  +K      + F + G
Sbjct: 60  RFWPSAQTFTNI-EFHYDILAKRLRELSFLNSGVSIKLIDEREEDKK------DHFMYEG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G++ ++     N++ I  ++F    E++     +VE A+ W +     I  + N I   +
Sbjct: 113 GIQAFVTHLNRNKTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRD 170

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R ALTR +  Y +      K   +   DD       ++SV + +P+F+ QTK
Sbjct: 171 GGTHLAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTK 230

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTA 443
            KLVS + +  VE+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK A
Sbjct: 231 DKLVSSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGA 290

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A 
Sbjct: 291 LDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 350

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537
            +K+ ++Q++  L+ ALGC   R +Y  + LRY  
Sbjct: 351 FDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHN 385


>gi|66474503|gb|AAY46821.1| GyrB [Aeromonas caviae]
          Length = 385

 Score =  211 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 146/396 (36%), Positives = 224/396 (56%), Gaps = 16/396 (4%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           G+FD+++Y++SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++     
Sbjct: 1   GEFDDNSYKVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST 60

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
              GT + F P P IF D   F    L K  +  ++L+  V      +++  E       
Sbjct: 61  G-TGTEVRFWPSPTIFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE------- 111

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
             F + GG+K +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + 
Sbjct: 112 AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDPYQEGVYCFT 168

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAE--LTQNKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH  G R ALTR +  Y +   +  K   +   DD+    + ++SV + +P
Sbjct: 169 NNIPQRDGGTHLVGFRTALTRTLNNYMDKEDSSKKAKSAASGDDVREGLIAVISVKVPDP 228

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F+ QTK KLVS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE
Sbjct: 229 KFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARE 288

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKI
Sbjct: 289 LTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKI 348

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           LNV  A  +K+ ++Q++  L+ ALGC         D
Sbjct: 349 LNVEKARFDKMISSQEVGTLITALGCGIGRDEYNPD 384


>gi|15530007|gb|AAL01491.1| gyrase B [bacterium PV-4]
          Length = 392

 Score =  211 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 144/403 (35%), Positives = 223/403 (55%), Gaps = 16/403 (3%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG+SVVNALS++L +T+ R   ++ Q ++ G P +P+ +     N
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKLKLTIRRDGKLYEQFYTMGEPDAPIAEIGDATN 60

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             GT I F P  + F D   F    L K  +  ++L+  V      +++  +       E
Sbjct: 61  -TGTEIRFWPSAETFSDTL-FHFDILAKRVRELSFLNSGVGIRLIDERDNKD-------E 111

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F + GG+  ++     N++ ++ EIF    E++     TVE A+ W +     I  + N
Sbjct: 112 FFKYEGGISAFVDYLNLNKTPVNKEIFHFVQERED--GITVEVAMQWNDGFQENIFCFTN 169

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPE 378
            I   +GGTH +G R ALTR +  Y +      K   S   DD       ++SV + +P+
Sbjct: 170 NIPQRDGGTHLAGFRAALTRNLNSYMDKEGFNKKGKTSATGDDAREGLTAVISVKVPDPK 229

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQRE 437
           F+ QTK KLVS + +  VE  + +    YL++NP EA  ++  +I+        R+ +  
Sbjct: 230 FSSQTKDKLVSSEVKSAVEQTMGEKLGDYLLENPNEAKLIVGKIIDAARAREAARKAREM 289

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
             RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKIL
Sbjct: 290 TRRKGALDLGGLPGKLADCQEKDPALSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKIL 349

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
           NV  A  +K+ ++Q++  L+ ALGC   R +Y  +  RY  ++
Sbjct: 350 NVEKARFDKMLSSQEVATLITALGCGIGRDEYDPDKTRYHNIV 392


>gi|66474529|gb|AAY46834.1| GyrB [Aeromonas sp. AN-30]
          Length = 385

 Score =  211 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 146/396 (36%), Positives = 224/396 (56%), Gaps = 16/396 (4%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           G+FD+++Y++SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++     
Sbjct: 1   GEFDDNSYKVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST 60

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
              GT + F P P IF D   F    L K  +  ++L+  V      +++  E       
Sbjct: 61  G-TGTEVRFWPSPTIFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE------- 111

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
             F + GG+K +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + 
Sbjct: 112 AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGI---RVEVAMQWNDSYQEGVYCFT 168

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAE--LTQNKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH  G R ALTR +  Y +   +  K   +   DD+    + ++SV + +P
Sbjct: 169 NNIPQRDGGTHVVGFRTALTRTLNNYMDKEDSSKKAKSAASGDDVREGLIAVISVKVPDP 228

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F+ QTK KLVS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE
Sbjct: 229 KFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARE 288

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKI
Sbjct: 289 LTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKI 348

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           LNV  A  +K+ ++Q++  L+ ALGC         D
Sbjct: 349 LNVEKARFDKMISSQEVGTLITALGCGIGRDEYNPD 384


>gi|290794997|gb|ADD64517.1| DNA gyrase B [Vibrio tasmaniensis]
          Length = 391

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 145/401 (36%), Positives = 220/401 (54%), Gaps = 15/401 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +  G P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT I F P  + F +   F    L K  +  ++L+  V       +E        + + F
Sbjct: 60  GTEIRFWPSEETFTNI-EFHYDILAKRLRELSFLNSGVSIKLIDKRE------EDKMDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ +++    N++ I  +IF   +E+      TVE A+ W +     I  + N I
Sbjct: 113 EYEGGIQAFVEHLNTNKTPIIQKIFHFDSERDD--GITVEVAMQWNDGYQENIYCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GG H +G R ALTR +  + +      K   S   DD       I+SV + +P+F+
Sbjct: 171 PQRDGGAHLAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVN 439
            QTK KLVS + +  VE+ + +    +L++NP EA  +   +I+ +  R   RK      
Sbjct: 231 SQTKDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNII 391


>gi|210142366|dbj|BAG80974.1| DNA gyrase subunit B [Paenibacillus macquariensis subsp.
           macquariensis]
          Length = 389

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 153/400 (38%), Positives = 223/400 (55%), Gaps = 15/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG+SVVNALS+++ VTV  +  I+ Q++ RG+P   +       ++ G
Sbjct: 1   GGGYKVSGGLHGVGVSVVNALSEKVVVTVKVKGHIYQQEYRRGVPQYDVRVIGD-SDEHG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF PDP+IF +   +D   LL   +  A+L+  +    + ++             F 
Sbjct: 60  TTVTFHPDPEIFTETTVYDYGTLLTRVREIAFLNKGIALTLNDER-------ADSSVRFM 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K Y++   E +  +  E    +  +       VE A+ + +     I S+CN I 
Sbjct: 113 YEGGIKEYVKFLNEKKEALHEEPIYVEGSRD---MMQVEVALQYNDSYTENIYSFCNNIN 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHESG + ALTR I  YA  T        ++  DD+      I+SV I EP+F G
Sbjct: 170 THEGGTHESGFKSALTRIINDYARKTGVIKDSNSNLSGDDVREGLTAIISVKIPEPQFEG 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + + +  VE+   +    +L +NP  + ++LE  ++ S  R   RK RE   R
Sbjct: 230 QTKTKLGNSEVRGIVESLFSEKLQEFLEENPAVSRRILEKGLQASRAREAARKARELTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS   A  +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 290 KSALEVSALPGKLADCSSKDASISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  ++I +N +I +++ A+G      +     RY KVII
Sbjct: 350 KARLDRILSNAEIRNMITAMGTGIGEDFDLSKARYHKVII 389


>gi|308152493|dbj|BAJ22225.1| DNA gyrase subunit B [Mycobacterium aichiense]
          Length = 419

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 133/424 (31%), Positives = 211/424 (49%), Gaps = 35/424 (8%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y++SGGLHGVG+SVVNALS  L   V      + Q + R +P +   ++ +   K GT
Sbjct: 2   GAYQVSGGLHGVGVSVVNALSVRLEADVRTDGYEWFQTYDRSVPGTL--RQGEKTKKTGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK----------- 254
            I F  DP IF     +D   + +  Q  A+L+  +    + ++   E+           
Sbjct: 60  TIRFWADPDIFETTT-YDFETIARRLQEMAFLNKGLTIELTDERVTPEQVVDEVVSDTAE 118

Query: 255 --------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                             +   F++PGGL  +++     ++ I   +     + +G    
Sbjct: 119 APKSAEEKAAEAIAPHKVKHRVFHYPGGLVDFVKHINRTKNSIQPSVIDFDGKGEGH--- 175

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISI 357
            VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +    ++  ++
Sbjct: 176 EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDANL 235

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP EA  
Sbjct: 236 TGDDIREGLAAVISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEQLTHWFESNPTEAKT 295

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGG
Sbjct: 296 VVNKAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRLSELYVVEGDSAGG 355

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY 
Sbjct: 356 SAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDLAKLRYH 415

Query: 537 KVII 540
           K+++
Sbjct: 416 KIVL 419


>gi|297614606|gb|ADI48605.1| DNA gyrase subunit B [Shewanella sp. KJW27]
          Length = 388

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 143/399 (35%), Positives = 224/399 (56%), Gaps = 16/399 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS++L +T+ R   ++ Q +  G P  P+++  +     GT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKLQLTIRRDGKVYEQFYKHGEPQEPIKEIGEATK-TGTE 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F P  + F D   F    L K  +  ++L+  V      +++  +       E F++ 
Sbjct: 60  IRFWPSHETFTDT-EFHYELLAKRIRELSFLNSGVGIRLVDERDNKD-------ELFHYE 111

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+K +++    N++ ++ ++F    E++     TVE A+ W +     I  + N I   
Sbjct: 112 GGIKAFVEYLNRNKTPVNKDVFHFSQERED--GITVEVAMQWNDGFQESIFCFTNNIPQR 169

Query: 326 EGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R ALTR +  Y E      K   +   DD       ++SV + +P+F+ QT
Sbjct: 170 DGGTHLAGFRAALTRNLNNYMEKEGFNKKGKTNATGDDAREGLTAVVSVKVPDPKFSSQT 229

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKT 442
           K KLVS + +  VE  + +  + YL++NP +A  ++  +I+ +  R   RK R    RK 
Sbjct: 230 KDKLVSSEVKGAVEQTMGEKLNDYLLENPADAKMIVGKIIDAARAREAARKAREMTRRKG 289

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 ALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 349

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
             +K+ ++Q++  L+ ALGC   R +Y  +  RY  +II
Sbjct: 350 RFDKMLSSQEVATLITALGCGIGRDEYDPDKTRYHYIII 388


>gi|295388310|gb|ADG03051.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 149/404 (36%), Positives = 228/404 (56%), Gaps = 15/404 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+I F P  + F +   F    L K  +  ++L+  V      ++E        +++ F
Sbjct: 60  GTQIRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KQDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ ++Q    N++ I  +IF    E++     +VE A+ W +     I  + N I
Sbjct: 113 MYEGGIQAFVQHLNTNKTPIIEKIFHFDLERED--GISVEVAMQWNDGFQESIFCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  + +      K   +   DD       ++SV   +P+F+
Sbjct: 171 PQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKAPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE+A+ +    +LV+NP EA  +   +I+ +  R   RK R    
Sbjct: 231 SQTKDKLVSSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
             A  +K+ ++Q++  L+ ALGC   R +Y  + LR   +IIMT
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRCHNIIIMT 394


>gi|290794991|gb|ADD64514.1| DNA gyrase B [Vibrio tasmaniensis]
          Length = 393

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 147/402 (36%), Positives = 222/402 (55%), Gaps = 15/402 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +S G P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT I F P  + F +   F    L K  +  ++L+  V       +E        + + F
Sbjct: 60  GTEIRFWPSEETFTNI-EFHYDILAKRLRELSFLNSGVSIKLIDKRE------EDKMDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ +++    N++ I  +IF   +E+      TVE A+ W +     I  + N I
Sbjct: 113 EYEGGIQAFVEHLNTNKTPIIQKIFHFDSERDD--GITVEVAMQWNDGYQENIYCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GG H +G R ALTR +  + +      K   S   DD       I+SV + +P+F+
Sbjct: 171 PQRDGGAHLAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVN 439
            QTK KLVS + +  VE+ + +    +L++NP EA  +   +I+ +  R   RK      
Sbjct: 231 SQTKDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIII 392


>gi|6729255|dbj|BAA89749.1| DNA gyrase subunit B [Mycobacterium marinum]
          Length = 421

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 140/427 (32%), Positives = 213/427 (49%), Gaps = 35/427 (8%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
            +NS Y +SGGLHGVG+SVVNALS  L V + R    +SQ + R  P +   K+ +   K
Sbjct: 1   GENSGYNVSGGLHGVGVSVVNALSTRLEVDIKRDGYEWSQFYDRAQPGTL--KQGEATKK 58

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY------- 255
            GT I F  D  IF     +D   + +  Q  A+L+  +    + ++   ++        
Sbjct: 59  TGTTIRFWADSDIFETT-EYDFETVARRLQEMAFLNKGLTINLTDERVTPDEVVDDVVSD 117

Query: 256 ------------------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                                +   F++PGGL  +++     +S I   I   + +  G 
Sbjct: 118 TAEAPKSAQEKAAESTAPHKVKSRTFHYPGGLVDFVKHINRTKSPIQQSIVDFEGKGSGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRA 354
               VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +     + 
Sbjct: 178 ---EVEIAMQWNGGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
            ++  DD+      ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP E
Sbjct: 235 PNLTGDDIREGLAAVISVRVAEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPSE 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   +  ++ RL  RK RE V RK+A     LPGKLADC       +EL++VEGDS
Sbjct: 295 AKTIVNKAVSSAQARLAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    L
Sbjct: 355 AGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDLSKL 414

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 415 RYHKIVL 421


>gi|297614602|gb|ADI48603.1| DNA gyrase subunit B [Shewanella algae]
          Length = 385

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 142/396 (35%), Positives = 220/396 (55%), Gaps = 16/396 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS++L +T+ R   ++ Q +  G P  P+++  +     GT I
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKLQLTIRRDGKVYEQFYKHGEPQEPIKEIGEATK-TGTEI 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F D   F    L K  +  ++L+  V      +++  +       E F++ G
Sbjct: 60  RFWPSHETFTDT-EFHYELLAKRIRELSFLNSGVGIRLIDERDNKD-------EFFHYEG 111

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K +++    N++ ++ ++F    E+      TVE A+ W +     I  + N I   +
Sbjct: 112 GIKAFVEYLNRNKTPVNKDVFHFSQERDD--GITVEVAMQWNDGFQESIFCFTNNIPQRD 169

Query: 327 GGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R ALTR +  Y E      K   +   DD       ++SV + +P+F+ QTK
Sbjct: 170 GGTHLAGFRAALTRNLNNYMENEGFNKKGKTNATGDDAREGLTAVVSVKVPDPKFSSQTK 229

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTA 443
            KLVS + +  VE  + +  + YL++NP +A  ++  +I+ +  R   RK R    RK A
Sbjct: 230 DKLVSSEVKGAVEQTMGEKLNDYLLENPADAKMIVGKIIDAARAREAARKAREMTRRKGA 289

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A 
Sbjct: 290 LDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 349

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
            +K+ ++Q++  L+ ALGC   R +Y  E  RY  +
Sbjct: 350 FDKMLSSQEVATLITALGCGIGRDEYDPEKTRYHYI 385


>gi|290794995|gb|ADD64516.1| DNA gyrase B [Vibrio tasmaniensis]
          Length = 393

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 145/401 (36%), Positives = 220/401 (54%), Gaps = 15/401 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +  G P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT I F P  + F +   F    L K  +  ++L+  V       +E        + + F
Sbjct: 60  GTEIRFWPSEETFTNI-EFHYDILAKRLRELSFLNSGVSIKLIDKRE------EDKMDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ +++    N++ I  +IF   +E+      TVE A+ W +     I  + N I
Sbjct: 113 EYEGGIQAFVEHLNTNKTPIIQKIFHFDSERDD--GITVEVAMQWNDGYQENIYCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GG H +G R ALTR +  + +      K   S   DD       I+SV + +P+F+
Sbjct: 171 PQRDGGAHLAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVN 439
            QTK KLVS + +  VE+ + +    +L++NP EA  +   +I+ +  R   RK      
Sbjct: 231 SQTKDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNII 391


>gi|301109930|ref|XP_002904045.1| DNA topoisomerase 2 [Phytophthora infestans T30-4]
 gi|262096171|gb|EEY54223.1| DNA topoisomerase 2 [Phytophthora infestans T30-4]
          Length = 807

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 81/382 (21%), Positives = 146/382 (38%), Gaps = 27/382 (7%)

Query: 308 WCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAV 367
             E+  +  S+ N I T +GG H S +   +T  +     L +  +  ++  + +     
Sbjct: 1   MSEDGFQQMSFVNGICTTKGGQHVSYIVDQITAKL--VGVLKKKNKGEAVKPNYIKNHMF 58

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
             +S  I  P F  QTK  L +          L D F   L ++ +        ++  + 
Sbjct: 59  VYVSALIDNPAFDSQTKETLTTRANSFGSTFNLSDKFLKQLEKSGLVEK-----ILLAAT 113

Query: 428 ERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG---SAKQARNR 484
           +     K+  +     +      G         +    L + EGDSA            R
Sbjct: 114 QGGSSGKRSRLTGIPKLDDANHAG------TAKSKDCTLILTEGDSAKTVAVGGLAVVGR 167

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTD 543
               V PLRGK+LNV  A   +I  N++I ++V+ LG +   +Y     LRY  ++IM D
Sbjct: 168 DYYGVFPLRGKMLNVREASHSQILKNEEIQNVVKILGLKYGQKYESTKGLRYGHLMIMAD 227

Query: 544 ADVDGAHIASLLLTFFYQEMYD-LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILE 602
            D DG+HI  L++   +      L+    L     P+ + T+G      +     +   E
Sbjct: 228 QDHDGSHIKGLVINLIHHFWPSLLVVDGFLQEFITPIVKCTKGRTKEVFYTMPEYEAWRE 287

Query: 603 EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKL 662
               +      I  +KGLG    ++ KE   D      +R   + D         + +K 
Sbjct: 288 R--TNQGRGWIIKFYKGLGTSTDAETKEYLSDLQTHQ-IRFTYDGD-GDADVIDMAFSK- 342

Query: 663 MGTKADERFKFIQ--ERASFID 682
              + ++R  +++  E  +++D
Sbjct: 343 --KRVEDRKDWLRGYEPGTYVD 362


>gi|82539825|ref|XP_724272.1| DNA topoisomerase II [Plasmodium yoelii yoelii str. 17XNL]
 gi|23478863|gb|EAA15837.1| DNA topoisomerase II, putative [Plasmodium yoelii yoelii]
          Length = 930

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 151/516 (29%), Positives = 235/516 (45%), Gaps = 51/516 (9%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y+ S GLHGVG+SV NALS  + V V R N I++ +  +G  +  L  ++    KRGT+I
Sbjct: 272 YKYSSGLHGVGLSVSNALSTFMKVNVFRDNKIYNIELEKGKVVKELNVQDCPIKKRGTQI 331

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE-------------- 253
            ++PD  IF      ++  +       AYL+ ++   +  ++   +              
Sbjct: 332 HYKPDNTIFKTNIKHNSEFIKNRLHQLAYLNDKLTFYFYDERNSNKGNSDKVSENVENNS 391

Query: 254 --KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA--IAWC 309
             K    E E     GGL  Y++   +N++ I        +         V+        
Sbjct: 392 YTKLDNYEYEIIKHEGGLDEYMEKLTKNKTNIFKTNNKVISISCFQKNIHVDLKLKWVTN 451

Query: 310 EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367
           + N  I S+ N + T +GGTH   ++ A++R I  Y        K  ++I  + +     
Sbjct: 452 QYNENILSFVNNVNTIDGGTHVDAMKYAISRSIN-YNVKKNETIKNFVNIPGEYIREGLT 510

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            ILS+ +  PEF GQTKTKL S   +  +E+ + +         P     +    ++  +
Sbjct: 511 AILSIKMNNPEFEGQTKTKLGSYYLKPILESIIFEKLSEIFDFEPNLLNTIYLKALQAKK 570

Query: 428 ERLRRRKQRE--VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
                +  R+   ++        LPGKL DC  +     E+FIVEGDSA GSAKQARNR 
Sbjct: 571 SDEEAKAARDLIRSKNNQYYSTILPGKLVDCISDDISKNEIFIVEGDSAAGSAKQARNRE 630

Query: 486 NQAVLPLRGKILNVAS-AGSEKIRNNQQIMDLVQALGCRTRS------------------ 526
            QA+LPL+GKILNV     ++KI  N ++  L+ A+G                       
Sbjct: 631 IQAILPLKGKILNVEKIKNNKKIFENIELKSLITAIGLNVNYDNSKTGKSNTNKRNDNKD 690

Query: 527 ----QYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI 582
                + +  LRY K+IIMTDADVDG HI  LLLTF Y+   ++IE  ++++  PPL+++
Sbjct: 691 IKKNNFIDTSLRYGKIIIMTDADVDGEHICILLLTFLYRFQKEIIENGNVYVACPPLYKV 750

Query: 583 TQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRF 617
           T         D   K  ++ +F    K  K  I  +
Sbjct: 751 TYNK----FFDNNIKDSVISKFNVTTKASKYIIHTY 782



 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 55/105 (52%), Positives = 69/105 (65%), Gaps = 1/105 (0%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NYDA  I ILEGLE VR RPGMYIG TD K LH +  E++DNA+DE      N I+V +
Sbjct: 111 NNYDAKDIVILEGLEAVRKRPGMYIGNTDSKGLHQILFEIVDNAVDEYNNHECNQIKVII 170

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146
             +  +T+ DNGRGIP + H K   KS LE +LT LH+G KF + 
Sbjct: 171 HNDESITIEDNGRGIPCDIHEK-TKKSALETVLTVLHSGAKFLDD 214



 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 4/68 (5%)

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669
            K EI RFKGLGEM+A QL  T MD   R L+RV ++  +       + IN LMG  +  
Sbjct: 863 KKYEIQRFKGLGEMMADQLWSTTMDPQVRKLIRVTVSDAIK----ANNLINSLMGEDSKS 918

Query: 670 RFKFIQER 677
           R  FI + 
Sbjct: 919 RKDFIIKN 926


>gi|62085676|gb|AAX63230.1| DNA gyrase subunit B [Gordonia amicalis]
          Length = 428

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 139/433 (32%), Positives = 217/433 (50%), Gaps = 38/433 (8%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+ +Y +SGGLHGVGISVVNALS ++ + +AR    ++Q +S   P +   ++   
Sbjct: 1   GGKFDSDSYAVSGGLHGVGISVVNALSTKVELEIARDGHNWAQTYSYAKPGAL--EQGDA 58

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------- 249
             K GT + F PDP+IF +   F+A  + +  Q  A+L+  +    +  +          
Sbjct: 59  TRKTGTTVRFWPDPQIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEAPGDA 118

Query: 250 -------------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
                              E A+    P+   +++P GL  Y++     +  I + +   
Sbjct: 119 NGDEDAPATDVAEVVLTETEKAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGF 178

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             + +G     VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   
Sbjct: 179 SAKGEGH---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEK 235

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
           +   ++   +  DD+      ++S  + +P+F GQTKTKL + + +  V+    +   H+
Sbjct: 236 KLIKEKDGKLTGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHW 295

Query: 408 LVQNPIEATKLLEWVIER-SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
              NP EA  +++   +        RR +  V RKTA     LPGKLADC  N     E+
Sbjct: 296 FEANPAEAKIIIKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEV 355

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS 526
           +IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     
Sbjct: 356 YIVEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHD 415

Query: 527 QYREEDLRYEKVI 539
           ++    LRY K++
Sbjct: 416 EFDISKLRYHKIV 428


>gi|317420202|emb|CBW30258.1| gyrase B subunit [Pseudoalteromonas nigrifaciens]
          Length = 390

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 141/399 (35%), Positives = 222/399 (55%), Gaps = 16/399 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS++L +T+ R+  +  Q +S G+P +PL       +  GT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKLKLTIRREGKLHEQTYSHGVPDAPLALIGDA-DTTGTE 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F P  + F +   F    L K  +  ++L+  V    + ++E        + + F + 
Sbjct: 60  LRFWPSDQTFTNL-DFHYDILAKRLRELSFLNSGVSIILNDERE------ENKSDHFKYE 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG++ +++    N++ I   +F     ++      VE ++ W +     I  + N I   
Sbjct: 113 GGIRAFVEYLNRNKTPIHKGVFHFTHTRE-EDGIVVEVSMQWNDAYQENIYCFTNNIPQR 171

Query: 326 EGGTHESGLRVALTRGIKKYA----ELTQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
           +GGTH +G R ALTR +  Y        + K   +   DD       ++SV + +P+F+ 
Sbjct: 172 DGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKFSS 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE A+ + F  +L+++P +A  ++  +I+ S  R   RK R    R
Sbjct: 232 QTKDKLVSSEVKSAVEQAMAEKFTEFLLEHPTDAKIVVGKIIDASRAREAARKAREMTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 292 KGAMDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
            A  +K+ ++Q++  L+ ALGC   R +Y  E LRY ++
Sbjct: 352 KARFDKMLSSQEVATLITALGCGIGRDEYNPEKLRYHRI 390


>gi|110612687|gb|ABG78306.1| GyrB [uncultured bacterium]
          Length = 402

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 146/412 (35%), Positives = 229/412 (55%), Gaps = 15/412 (3%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GG FD++ Y++SGGLHGVG+SVVNALS+ L + V RQ  +  Q++  G PL  + +  + 
Sbjct: 1   GGNFDDNAYKVSGGLHGVGVSVVNALSEHLWLEVHRQGRMHRQEYRMGEPLFAM-RDVEA 59

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
             +RGT + F P  ++F     F    L K  +  A+L+  ++   +  +   E+     
Sbjct: 60  SVRRGTTVRFLPSTEVF-AITEFHYDILAKRLRELAFLNSGLRIELADLRPGQERE---- 114

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
            + F + GG+  ++Q  +E ++ +  ++ +      G     VE A+ W +     +  Y
Sbjct: 115 -DVFAYEGGICAFVQHLVELKTPLHPKVISLNYRADGI---EVEVALQWTDGYQEGVYCY 170

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIRE 376
            N I   +GGTH +G R ALTR + +Y E     +   +    DD+    + +LSV + +
Sbjct: 171 TNNIPQRDGGTHLTGFRAALTRTLTQYIERENLAKNAKVQLSGDDMREGLIAVLSVKVPD 230

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQ 435
           P+F+ QTK KLVS + +  VE  +    + +L++NP EA  +   V++        R+ +
Sbjct: 231 PKFSSQTKEKLVSSEVKTVVEQGVGQTLEEFLLENPGEARTIAGKVVDAARAREAARKAR 290

Query: 436 REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
               RK A+    LPGKLADC +     +ELF+VEGDSAGGSAKQ RNR NQAVLPL+GK
Sbjct: 291 EMTRRKGALDIAGLPGKLADCQEKDPALSELFLVEGDSAGGSAKQGRNRKNQAVLPLKGK 350

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADV 546
           ILNV  A  +++  + ++  L+ AL C   + +Y  + +RY ++IIMTDADV
Sbjct: 351 ILNVEKARFDRMLASAEVGTLITALSCGIGKDEYNPDKIRYHRIIIMTDADV 402


>gi|290794999|gb|ADD64518.1| DNA gyrase B [Vibrio kanaloae]
          Length = 392

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 144/402 (35%), Positives = 223/402 (55%), Gaps = 15/402 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q ++ G P +PL       ++ 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYNHGEPQAPLAIVGDT-DRT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT I F P  + F +   +    L K  +  ++L+  V      ++E        + + F
Sbjct: 60  GTEIRFWPSEETFTNI-EYHYDILAKRLRELSFLNSGVSIRLIDERE------EDKMDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ +++    N++ I  +IF   +E+      TVE A+ W +     I  + N I
Sbjct: 113 EYEGGIQAFVEHLNTNKTPIIQKIFHFDSERDD--GITVEVAMQWNDGYQENIYCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GG H +G R ALTR +  + +      K   S   DD       I+SV + +P+F+
Sbjct: 171 PQRDGGAHLAGFRSALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVN 439
            QTK KLVS + +  VE+ + +    +L++NP EA  +   +I+ +  R   RK      
Sbjct: 231 SQTKDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIII 392


>gi|19909623|dbj|BAB87007.1| DNA gyrase subunit B [Oceanospirillum maris]
          Length = 388

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 140/400 (35%), Positives = 214/400 (53%), Gaps = 17/400 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS++L +TV R   +  Q +  G+P +PL       +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLTLTVWRSGKLHEQVYVHGVPQTPLRVIGD-SDKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F P P+ F +   F    L K  +  ++L+  V      ++           + F 
Sbjct: 60  TETRFHPSPETFTNV-EFHYDILAKRLRELSFLNSGVSIILLDERS-------GRTDNFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  ++    +N++ ++         + GT   TVE A+ W E     I  + N I 
Sbjct: 112 YEGGLSAFVTYLNQNKTALNDVFHFTSEREDGT---TVEVALQWNESYQENIYCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  Y   +    K   +   +D       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLAGFRAALTRTLNTYIEQDPKVKKDRANTSGEDAREGLTAIVSVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  +   F  YL + P EA  ++  +++ +  R   RK R    R
Sbjct: 229 QTKDKLVSSEVKTAVEQEMGRLFSDYLQEKPNEAKAIVNKMLDAARAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            A  +K+ ++ ++  L+ A+GC   R ++  + LRY  +I
Sbjct: 349 KARFDKMLSSVEVGTLITAMGCGIGREEFNPDKLRYHSII 388


>gi|300245032|gb|ADJ94109.1| DNA gyrase subunit B [Gordonia desulfuricans]
          Length = 421

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 136/426 (31%), Positives = 213/426 (50%), Gaps = 40/426 (9%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS ++ V +AR    +++ F+   P      +     K G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTKVEVEIARDGYNWAETFTDSKPGEL--VQGDATRKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T + F PDP IF +   F+A  + +  Q  A+L+  +    + ++               
Sbjct: 59  TTVRFWPDPSIFTETTAFNAETVARRLQEMAFLNKGLTITLTDNRPKAVEVPGDPNGDAE 118

Query: 250 ----------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
                           E       P+   +++P GL  Y++     ++ I   +     +
Sbjct: 119 TGEGGPDTAEAVKSEEEKKVAASKPKTRTYHYPDGLVDYIKHINRTKTAIHKSVIGFTGK 178

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350
             G     VE A+ W +     + ++ NTI T EGGTHE G R ALTR +  YA   +  
Sbjct: 179 GTGH---EVEIAMQWNDGYSESVHTFANTINTHEGGTHEEGFRAALTRVVNSYARDKKLL 235

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            ++  ++  DD+      ++SV + EP+F GQTKTKL + + +  V+ A  +  +H+   
Sbjct: 236 KEKDSNLTGDDIREGLAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKASGEHLEHWFEA 295

Query: 411 NPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           NP EA  ++   ++ +  RL  RK R+ V RK+A     LPGKLADC  N     E+++V
Sbjct: 296 NPAEAKVIVNKAVDSAHARLAARKARDLVRRKSATDIGGLPGKLADCRSNDPSKCEVYLV 355

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           EGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++ 
Sbjct: 356 EGDSAGGSAKTGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFD 415

Query: 530 EEDLRY 535
              LRY
Sbjct: 416 ISKLRY 421


>gi|190888556|gb|ACE95903.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888558|gb|ACE95904.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888560|gb|ACE95905.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888562|gb|ACE95906.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888564|gb|ACE95907.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888566|gb|ACE95908.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888568|gb|ACE95909.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888570|gb|ACE95910.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888572|gb|ACE95911.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888574|gb|ACE95912.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888576|gb|ACE95913.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888578|gb|ACE95914.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888580|gb|ACE95915.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888582|gb|ACE95916.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888584|gb|ACE95917.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888586|gb|ACE95918.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888588|gb|ACE95919.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888590|gb|ACE95920.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888592|gb|ACE95921.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888594|gb|ACE95922.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888596|gb|ACE95923.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888598|gb|ACE95924.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888600|gb|ACE95925.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888602|gb|ACE95926.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
 gi|190888604|gb|ACE95927.1| topoisomerase IV subunit E [Mycoplasma gallisepticum]
          Length = 136

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 76/136 (55%), Positives = 94/136 (69%), Gaps = 1/136 (0%)

Query: 52  LEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVD 111
           L+GLEPVR RPGMYIG TD + LHHL  E+ DNA+DE + G AN IEV    +G + V D
Sbjct: 1   LKGLEPVRKRPGMYIGSTDTRGLHHLVWELFDNAVDEALNGSANKIEVVHKKDGSIIVTD 60

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171
           NGRGIPV  +    N ST++ + T LHAGGKFD+  Y++SGGLHGVG SVVNALS +L V
Sbjct: 61  NGRGIPVGKNL-ATNLSTVDTVYTVLHAGGKFDDQAYKVSGGLHGVGASVVNALSRKLIV 119

Query: 172 TVARQNTIFSQKFSRG 187
           TV R   ++   +  G
Sbjct: 120 TVHRDGGMYESIYQDG 135


>gi|324331796|gb|ADY38684.1| DNA gyrase subunit B [Ignatzschineria sp. NML 95-0260]
          Length = 376

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 137/385 (35%), Positives = 211/385 (54%), Gaps = 16/385 (4%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS +L +T+ +   I  Q+++ G P  PL +  +  +K GT + F+P
Sbjct: 1   GGLHGVGVSVVNALSSKLKLTIYKHGKIHEQEYTVGEPDYPLREIGET-DKNGTTVYFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
              +F D   F+   L K  +  A+L+  ++     ++   E       E F + GG+K 
Sbjct: 60  SKDVFTDI-DFEFDILFKRLRELAFLNSGIRIVLKDERTDRE-------EIFEYEGGIKA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           Y++   +NR+ I  +IF    ++       VE A  W +     +  Y N I   +GGTH
Sbjct: 112 YVELINKNRNEIHPDIFYCDCQRDNI---NVEIAFQWTDGYQESVFCYTNNIPQSDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R A+TR + +Y +     + +      DD       I+SV I  P+F+ QTK KLV
Sbjct: 169 LAGFRAAMTRTLNRYMQDEGLLKKVKVATTGDDAREGLTAIISVKIPGPKFSSQTKEKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKL 447
           S + +  V++ L +  + +L+++P +A  +   +I+ +  R   RK RE   RK+A+   
Sbjct: 229 SSEVRPVVDSVLAERLEQFLLEHPDDAKAITSKIIDAAMAREAARKARENTRRKSALDIA 288

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +ELFIVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +++
Sbjct: 289 GLPGKLADCQEKDPAQSELFIVEGDSAGGSAKQGRSRKFQAILPLKGKILNVERARFDRM 348

Query: 508 RNNQQIMDLVQALGCRTRSQYREED 532
            ++ +I  L+ ALGC       + D
Sbjct: 349 ISSAEIGTLITALGCGIGRDEFDPD 373


>gi|109820271|gb|ABG46472.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820313|gb|ABG46493.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820321|gb|ABG46497.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820327|gb|ABG46500.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820337|gb|ABG46505.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820339|gb|ABG46506.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820343|gb|ABG46508.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|109820345|gb|ABG46509.1| DNA gyrase subunit B [Ralstonia solanacearum]
          Length = 291

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 114/273 (41%), Positives = 167/273 (61%), Gaps = 4/273 (1%)

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           GLR A+TR I KY    +   K  +    DD+      +LSV + EP+F+ QTK KLVS 
Sbjct: 3   GLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCVLSVKVPEPKFSSQTKDKLVSS 62

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRL 449
           + +  VE  +      +L++ P +A  +   ++E +  R   RK RE+ R+   +  + L
Sbjct: 63  EVRLPVEEMVAKALTDFLLETPNDAKIICGKIVEAARAREAARKAREMTRRKGVLDGMGL 122

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +ELFIVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ +
Sbjct: 123 PGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKMLS 182

Query: 510 NQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568
           +Q+++ L+ A+G          + LRY ++IIMTDADVDG+HI +LLLTFFY++M  +IE
Sbjct: 183 SQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPAIIE 242

Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           + H+++  PPL++I  G +  Y  D+      L
Sbjct: 243 RGHVYIAQPPLYKIKHGKEERYIKDDVEMAAYL 275


>gi|531259|dbj|BAA07145.1| DNA gyrase B subunit [Pseudomonas putida]
          Length = 389

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 143/400 (35%), Positives = 222/400 (55%), Gaps = 16/400 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS++L +TV R   I+ Q +  G+P +P+          G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGD-SETTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I F+P  + F +   F    L K  +  ++L+  V      ++   E       E F 
Sbjct: 60  THIHFKPSAETFKNIH-FSWDILAKRIRELSFLNSGVGILLKDERSGKE-------EFFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL+ +++    N++ ++S++F    +++      VE A+ W +     +  + N I 
Sbjct: 112 YEGGLRAFVEYLNTNKTPVNSQVFHFNVQRED--GVGVEVALQWNDSFNENLLCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH  G R +LTR +  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 170 QRDGGTHLVGFRSSLTRSLNNYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    R
Sbjct: 230 QTKDKLVSSEVKTAVEQEMNKFFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV 
Sbjct: 290 KGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 350 KARFDKMISSQEVGTLITALGCGIGREEYNIDKLRYHNII 389


>gi|58530656|dbj|BAD89282.1| DNA gyrase B [Ferrimonas sp. A3B-57-2]
          Length = 390

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 147/401 (36%), Positives = 225/401 (56%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALSD+L +TV RQ  I  Q +  G P +PL+         G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSDKLDLTVRRQGHIHEQTYHLGDPAAPLKVVGDSEK-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I F P P+IF D   F    L K  +  ++L+  V      +++  E       + F 
Sbjct: 60  TMIRFWPSPQIFSDTT-FHYDILAKRLRELSFLNSGVSIRLVDERDGKE-------DHFC 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++   +N++ ++ ++F   TE++      VE ++ W +     I  + N I 
Sbjct: 112 YEGGIHAFVEFLNQNKTPVNQQVFHFTTERED--GIGVEVSMQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  Y +      K   S   DD       ++SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAALTRTLNSYMDKEGYSKKAKTSASGDDAREGLTAVVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK R    R
Sbjct: 230 QTKDKLVSSEVKTAVEQAMGEKLQEFLLENPGDAKIVVNKIIDAARAREAARKAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR  QA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKFQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ A+GC   R +Y  +  RY  +II
Sbjct: 350 KARFDKMLSSQEVATLITAMGCGIGRDEYDPDKTRYHNIII 390


>gi|198042682|gb|ACH81166.1| GyrB [Pseudoalteromonas sp. UST020129-030]
          Length = 372

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 136/381 (35%), Positives = 216/381 (56%), Gaps = 15/381 (3%)

Query: 136 TLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK 195
            LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L +T+ R+  +  Q +S G+P +PL  
Sbjct: 1   VLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLTLTIRREGKLHEQTYSMGVPNAPLAI 60

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
                +  GT + F P  + F +   F    L K  +  ++L+  V    S ++E     
Sbjct: 61  IGDA-DTTGTELRFWPSGETFTN-LDFHYDILAKRLRELSFLNSGVSIILSDERE----- 113

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PE 314
              + + F + GG++ +++    N++ +   +F    E++     +VE ++ W +     
Sbjct: 114 -ENKTDHFKYDGGIQAFVEYLNRNKTPVHKGVFHFTHERE-EDGISVEVSMQWNDGFQEN 171

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYA----ELTQNKRAISIISDDLMISAVGIL 370
           I  + N I   +GGTH +G R ALTR +K Y        + K   +   DD       ++
Sbjct: 172 IYCFTNNIPQRDGGTHLAGFRSALTRTLKNYMEKEGFNKKAKTTSNATGDDAREGLTAVV 231

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEER 429
           SV + +P+F+ QTK KLVS + +  VE A+ + F  +L++NP++A  ++  +I+      
Sbjct: 232 SVKVPDPKFSSQTKDKLVSSEVKSAVEQAMAEKFSDFLLENPMDAKIVVGKIIDAARARE 291

Query: 430 LRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+
Sbjct: 292 AARKAREMTRRKGAMDLAGLPGKLADCQEKDPSLSELYIVEGDSAGGSAKQGRNRKNQAI 351

Query: 490 LPLRGKILNVASAGSEKIRNN 510
           LPL+GKILNV  A  +K+ ++
Sbjct: 352 LPLKGKILNVEKARFDKMLSS 372


>gi|82940540|emb|CAJ44278.1| gyrase B protein [Vibrio lentus]
          Length = 393

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 144/400 (36%), Positives = 219/400 (54%), Gaps = 15/400 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +  G P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT I F P  + F +   F    L K  +  ++L+  V       +E        + + F
Sbjct: 60  GTEIRFWPSEETFTNI-EFHYDILAKRLRELSFLNSGVSIKLIDKRE------EDKMDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ +++    N++ I  +IF   +E+      TVE A+ W +     I  + N I
Sbjct: 113 EYEGGIQAFVEHLNTNKTPIIQKIFHFDSERDD--GITVEVAMQWNDGYQENIYCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GG H +G R ALTR +  + +      K   S   DD       I+SV + +P+F+
Sbjct: 171 PQRDGGAHLAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVN 439
            QTK KLVS + +  VE+ + +    +L++NP EA  +   +I+ +  R   RK      
Sbjct: 231 SQTKDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNI 390


>gi|317448554|emb|CBW30249.1| gyrase B subunit [Pseudoalteromonas carrageenovora]
          Length = 391

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 144/400 (36%), Positives = 225/400 (56%), Gaps = 16/400 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS++L +TV R+  +  Q ++ G+P +PL          GT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKLKLTVRREGKLHEQFYTMGVPDAPLAIIGD-SETTGTEL 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F    L K  +  ++L+  V    S ++E        + + F + G
Sbjct: 60  RFWPSGETFTNL-DFHYDILAKRLRELSFLNSGVSIILSDERE------ENKSDHFKYEG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G++ +++    N++ +   +F    E++     +VE ++ W +     I  + N I   +
Sbjct: 113 GIQAFVEYLNRNKTPVHKGVFHFTHERE-EDGISVEVSMQWNDGFQENIYCFTNNIPQRD 171

Query: 327 GGTHESGLRVALTRGIKKYA----ELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
           GGTH +G R ALTR +  Y        + K   +   DD       ++SV + +P+F+ Q
Sbjct: 172 GGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKFSSQ 231

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRK 441
           TK KLVS + +  VE A+ + F  +L++NP++A  ++  +I+ +  R   RK R    RK
Sbjct: 232 TKDKLVSSEVKSAVEQAMAEKFTDFLLENPMDAKIVVGKIIDAARAREAARKAREMTRRK 291

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  
Sbjct: 292 GAMDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 351

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
           A  +K+ ++Q++  L+ ALGC   R +Y  E LRY ++II
Sbjct: 352 ARFDKMLSSQEVATLITALGCGIGRDEYNPEKLRYHRIII 391


>gi|148971409|gb|ABR20242.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 418

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 127/428 (29%), Positives = 194/428 (45%), Gaps = 13/428 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFDN+TY+++GGLHGVG+SVVNALSD L + + ++   F Q + +G+P 
Sbjct: 1   EVIMTVLHAGGKFDNNTYKVAGGLHGVGVSVVNALSDTLILEIDQKGQHFHQVYHKGVPE 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL        + GT I F PD  I      F    L    +  +YL+  +    + ++ 
Sbjct: 61  APLAVTG-TSERTGTAIRFTPDLTIMET-DQFSYDVLAHRFRELSYLNPALTITLAEEET 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
           + E         F+  GG++++L    EN+ +I   ++  KT + G+    V        
Sbjct: 119 LRE-------AVFHDEGGIRSFLAFVNENKRIIHDSLYFRKTFENGSL-FEVSLQYQDTT 170

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
           +   + SY N I T EGG+H  G R ALTR + +Y       +   +  +D+      I+
Sbjct: 171 DAETLLSYVNNIPTREGGSHVRGFRSALTRVVNRYIREKNLNKGEEVKGEDIREGLSSII 230

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           S+ I  P+F GQTK KL S       E  L +  +    +    A  + +  I  ++ R 
Sbjct: 231 SIKIPNPQFEGQTKAKLGSSWVSGATETFLSEALEDAFEKQGTVARAIADKAILTAQARE 290

Query: 431 RRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK       K   R++    K                  G       +          
Sbjct: 291 AARKGPGADQEKERPRRVESSRKARRLPGKRPGQGRTLHRGGGFGRRVGQTRARSPFSGD 350

Query: 490 LPLRGKILNVASAG-SEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVD 547
              +G ILNV      EK   + ++  L+ A+GC    +      L Y K+IIMTDADVD
Sbjct: 351 SSSQGYILNVEKTKGVEKFITHDEVRALITAVGCGPGEEEFSLKNLCYHKIIIMTDADVD 410

Query: 548 GAHIASLL 555
           G+HI +LL
Sbjct: 411 GSHIRTLL 418


>gi|308153148|dbj|BAJ22163.1| DNA gyrase subunit B [Shewanella sp.]
          Length = 391

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 141/401 (35%), Positives = 223/401 (55%), Gaps = 15/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L +T+ R   ++ Q ++ G P +P+++     +  G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLQLTIRRNGKLYEQFYTMGEPDAPIKEIGDATS-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F    L+K  +  ++L+  V      +++  +       E F 
Sbjct: 60  TELRFWPSHETFTNNIEFHFDILVKRVRELSFLNSGVGIRLVDERDNRD-------EFFQ 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  ++     N++ I+ ++F    E+      TVE A+ W +     I  + N I 
Sbjct: 113 YQGGISAFVDYLNVNKTPINKDVFHFIHERDD--GITVEVAMQWNDGFQENIFCFTNNIP 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  Y E      K   S   DD       ++SV + +P+F+ 
Sbjct: 171 QRDGGTHLAGFRGALTRNLNAYMEREGYNKKGKTSATGDDAREGLTAVVSVKVPDPKFSS 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL+++P EA  ++  +I+ +  R   RK R    R
Sbjct: 231 QTKDKLVSSEVKSAVEQTMGEKLGDYLMEHPTEARLIVGKIIDAARAREAARKAREMTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 291 KGALDLGGLPGKLADCQEKDPALSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  +  RY  ++I
Sbjct: 351 KARFDKMLSSQEVATLITALGCGIGRDEYDPDKTRYHNIVI 391


>gi|299780361|gb|ADJ39723.1| DNA topoisomerase II large subunit [Enterobacteria phage T4T]
          Length = 516

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 110/513 (21%), Positives = 177/513 (34%), Gaps = 64/513 (12%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTD-----------------EKALHHLFSEVIDNAMDE 88
            + I+IL  +E ++ R GMYIG +                     L  L  E+IDN++DE
Sbjct: 3   KNEIKILSDIEHIKKRSGMYIGSSANETHERFMFGKWESVQYVPGLVKLIDEIIDNSVDE 62

Query: 89  VIA---GYANLIEVSLDGNGFLTVVDNGRGIPVENH--PKFPNKSTLEIILTTLHAGGKF 143
            I     +AN I V++  N  +TV DNGRGIP      P            T   AGG F
Sbjct: 63  GIRTKFKFANKINVTI-KNNQVTVEDNGRGIPQAMVKTPTGEEIPGPVAAWTIPKAGGNF 121

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
            +    ++GG++GVG S+ N  S                + S G+     E        +
Sbjct: 122 GDDKERVTGGMNGVGSSLTNIFSVMFVGETGDGQNNIVVRCSNGMENKSWEDIPG--KWK 179

Query: 204 GTRITFRPDPKIFGDKA--GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           GTR+TF PD   F             L   Q+ A +   ++  ++  K            
Sbjct: 180 GTRVTFIPDFMSFETNELSQVYLDITLDRLQTLAVVYPDIQFTFNGKKV----------- 228

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
                G  K Y +   E+  +   E  +               A+    +     +Y N 
Sbjct: 229 ----QGNFKKYARQYDEHAIVQEQENCS--------------IAVGRSPDGFRQLTYVNN 270

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVF-IREPEFA 380
           I T  GG H       +           + K  I +    +      ++ V  ++   F 
Sbjct: 271 IHTKNGGHHIDCAMDDICE---DLIPQIKRKFKIDVTKARVKECLTIVMFVRDMKNMRFD 327

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
            QTK +L S   +     +        + +  +    +L  +IE +  R    ++    +
Sbjct: 328 SQTKERLTSPFGEIR---SHIQLDAKKISRAILNNEAILMPIIEAALARKLAAEKAAETK 384

Query: 441 KTAIRKLRLPG-KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
                        +          T LF+ EGDSA G     R++      PLRGK+LN 
Sbjct: 385 AAKKASKAKVHKHIKANLCGKDADTTLFLTEGDSAIGYLIDVRDKELHGGYPLRGKVLNS 444

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
                  +  N+++ D+    G     +  EE 
Sbjct: 445 WGMSYADMLKNKELFDICAITGLVLGEKAFEEK 477


>gi|82940550|emb|CAJ44283.1| gyrase B protein [Listonella anguillarum]
          Length = 385

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 141/394 (35%), Positives = 218/394 (55%), Gaps = 14/394 (3%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G+P +PL    +  +K
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSEKVLLTIYRNGAIHTQTYCHGVPQAPLAVVGET-DK 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT + F P  + F +   F    L K  +  ++L+  V      ++E  +K      + 
Sbjct: 60  TGTTLRFWPSAETFTNI-EFHYDILAKRLRELSFLNSGVSIKLFDEREEDKK------DH 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           F + GG+K ++     N++ I  ++F   +E+      TVE A+ W +     I  + N 
Sbjct: 113 FRYEGGIKAFVGHLNRNKTPIHEKVFHFSSERDD--GITVEVAMQWNDGFQENIYCFTNN 170

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GG H +G R ALTR +  + +      K   +   DD       ++SV + +P+F
Sbjct: 171 IPQRDGGAHLAGFRGALTRTLNTFMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKF 230

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EV 438
           + QTK KLVS + +  VE+A+ +    +L +NP EA  +   +I+ +  R   RK R   
Sbjct: 231 SSQTKDKLVSSEVKSAVESAMGEKLAEFLAENPSEAKMVCSKIIDAARAREAARKAREMT 290

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILN
Sbjct: 291 RRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILN 350

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           V  A  +K+ ++Q++  L+ ALGC         D
Sbjct: 351 VEKARFDKMLSSQEVATLITALGCGIGRDEYNPD 384


>gi|259018180|gb|ACV89682.1| DNA gyrase subunit B [Nocardia brasiliensis]
          Length = 416

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 132/422 (31%), Positives = 210/422 (49%), Gaps = 35/422 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L   + R    +SQ +   IP      + +   + G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSSRLEAEIDRDGYHWSQSYKDSIPGKL--VQGEASKQTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK---------- 254
           T I F  DP+IF     ++   + +  Q  A+L+  +    + ++    +          
Sbjct: 59  TTIRFWADPEIFETTT-YNFETVARRLQEMAFLNKGLTITLTDERVSESEITDDVVSETA 117

Query: 255 ---------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
                              +   +++PGGL+ +++     +  I + +     +  G   
Sbjct: 118 EAPKHAEADAAAAPVEHKVKTRTYHYPGGLEDFVRHINRTKQPIHNSVVGFTGKGTGH-- 175

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
             +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +   ++  +
Sbjct: 176 -ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGN 234

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           +  DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +A 
Sbjct: 235 LTGDDIREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQKACNEHLTHWFEANPADAK 294

Query: 417 KLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAG
Sbjct: 295 TIVNKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAG 354

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           GSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY
Sbjct: 355 GSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRY 414

Query: 536 EK 537
            K
Sbjct: 415 HK 416


>gi|324331800|gb|ADY38686.1| DNA gyrase subunit B [Ignatzschineria indica]
          Length = 379

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 138/387 (35%), Positives = 214/387 (55%), Gaps = 16/387 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           ISGGLHGVG+SVVNALS +L +T+ +   I  Q+++ G P  PL +  +  +K GT + F
Sbjct: 2   ISGGLHGVGVSVVNALSSKLKLTIYKHGKIHEQEYTLGDPDYPLREIGET-DKTGTTVYF 60

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +P  ++F +   FD   L K  +  A+L+  ++     +++  E       + F + GG+
Sbjct: 61  KPSKEVFNNI-DFDYDTLYKRLRELAFLNSGIRITLRDERDDRE-------DVFQYEGGI 112

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K Y++   +NR+ I  +IF    +K      +VE ++ W +     +  Y N I   +GG
Sbjct: 113 KAYVELINKNRNKIHPQIFYCNCQKDNI---SVEISLQWTDGYQESVFCYTNNIPQSDGG 169

Query: 329 THESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R A+TR + +Y +     +        DD       I+SV I  P+F+ QTK K
Sbjct: 170 THLAGFRAAMTRTLNRYMQEEGLLKKTKVATTGDDAREGLTAIISVKIPGPKFSSQTKEK 229

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIR 445
           LVS + +  V++ L +  + +L++ P +A  +   +I+ +  R   RK RE   RK+A+ 
Sbjct: 230 LVSSEVRPVVDSILAERLEEFLLERPEDAKAITSKIIDAAMAREAARKARENTRRKSALD 289

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC +     +ELFIVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +
Sbjct: 290 IAGLPGKLADCQEKDPAKSELFIVEGDSAGGSAKQGRSRKFQAILPLKGKILNVERARFD 349

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREED 532
           ++  + +I  L+ ALGC       + D
Sbjct: 350 RMIGSAEIGTLITALGCGIGRDEFDPD 376


>gi|51987930|dbj|BAD44725.1| DNA gyrase subunit B [Pseudomonas fluorescens]
          Length = 390

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 146/402 (36%), Positives = 220/402 (54%), Gaps = 17/402 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P  P++         G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGD-SESTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+I F+P  + F +   F    L K  +  ++L+  V      ++   E       E F 
Sbjct: 60  TQIHFKPSAETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL+ +++    N++ ++         + G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLRAFVEYLNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH  G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    R
Sbjct: 229 QTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIM 541
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIM
Sbjct: 349 KARFDKMISSQEVGTLITALGCGIGRDEYNIDKLRYHNIIIM 390


>gi|259018196|gb|ACV89690.1| DNA gyrase subunit B [Nocardia africana]
          Length = 413

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 131/419 (31%), Positives = 214/419 (51%), Gaps = 32/419 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS  +   + R    +SQ++    P   ++   +  ++ G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSRMVTEIDRDGYHWSQEYKDAKPGKLVK--GEPTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T   F  DP +F     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTQRFWADPDVFETTT-YNFETISRRLQEMAFLNKGLTITLTDERVSEAEVTDEVVSETA 117

Query: 250 ---EIAEKYGIPEKE----EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
              +  E    PE +     +++PGGL+ +++     +  I + + +  ++  G     +
Sbjct: 118 EAPKHDEGASAPEHKVKTRTYHYPGGLEDFVKHINRTKQPIHNTVVSFTSKGTGH---EL 174

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359
           E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +   ++  ++  
Sbjct: 175 EVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLTG 234

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD+      I+SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  ++
Sbjct: 235 DDIREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIV 294

Query: 420 EWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
           +  +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGSA
Sbjct: 295 QKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSA 354

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           K  R+   QA+LPLRGKI+NV  A  +K+  N ++  ++ A G     ++    LRY K
Sbjct: 355 KSGRDSMYQAILPLRGKIINVEKARIDKVLKNNEVQSIITAFGTGIHDEFDISKLRYHK 413


>gi|82940536|emb|CAJ44276.1| gyrase B protein [Vibrio cyclitrophicus]
          Length = 392

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 145/400 (36%), Positives = 222/400 (55%), Gaps = 15/400 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +S G P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT I F P  + F +   F    L K  +  ++L+  V      ++E        + + F
Sbjct: 60  GTEIRFWPSEETFTNI-EFHYDILAKRLRELSFLNSGVSIKLIDERE------EDKMDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ +++    N++ I  +IF   +E++     TVE A+ W +     I  + N I
Sbjct: 113 EYEGGIQAFVEHLNTNKTPIIQKIFHFNSERED--GITVEVAMQWNDGYQENIYCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GG H +G R ALTR +  + +      K   S   DD       I+SV + +P+F+
Sbjct: 171 PQRDGGAHLAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVN 439
            QTK KLVS + +  VE+ + +    +L++NP EA  +   +I+ +  R   RK      
Sbjct: 231 SQTKDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNI 390


>gi|308152503|dbj|BAJ22230.1| DNA gyrase subunit B [Mycobacterium aurum]
          Length = 419

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 130/424 (30%), Positives = 211/424 (49%), Gaps = 35/424 (8%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y++SGGLHGVG+SVVNALS  L   +    + + Q +   +P +   ++ +   K GT
Sbjct: 2   GAYQVSGGLHGVGVSVVNALSTRLEADIRTDGSEWFQTYEYSVPGTL--RQGEKTKKTGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK----------- 254
            I F  DP+IF     +D   + +  Q  A+L+  +      ++  A++           
Sbjct: 60  TIRFWADPEIFETT-DYDFETIARRLQEMAFLNKGLTIDLVDERVAADEVTDEIVSDTAE 118

Query: 255 --------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                             +   +++PGGL  +++     ++ I   I     +  G    
Sbjct: 119 APKSADEKEAEAKAPHKVKHRTYHYPGGLVDFVKHINRTKTPIQQSIIDFDGKGPGH--- 175

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISI 357
            VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +    ++  ++
Sbjct: 176 EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRSALTTVVNKYAKDKKLLKEKDANL 235

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP EA  
Sbjct: 236 TGDDIREGLAAVISVKVSDPQFEGQTKTKLGNTEVKSFVQKICNEQLTHWFESNPAEAKT 295

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +E+++VEGDSAGG
Sbjct: 296 VVNKAVSSAQARMAARKARELVRRKSATDIGGLPGKLADCRSTDPRLSEVYVVEGDSAGG 355

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY 
Sbjct: 356 SAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIAKLRYH 415

Query: 537 KVII 540
           K+++
Sbjct: 416 KIVL 419


>gi|95105518|gb|ABF54926.1| DNA gyrase subunit B [Vibrio harveyi]
          Length = 389

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 144/399 (36%), Positives = 224/399 (56%), Gaps = 15/399 (3%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       ++ GT
Sbjct: 1   TSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           +I F P  + F +   F    L K  +  ++L+  V      ++E        + + F F
Sbjct: 60  QIRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KSDHFMF 112

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG++ +++    N++ I  +IF    E++     +VE A+ W +     I  + N I  
Sbjct: 113 EGGIQAFVEHLNTNKTPIIEKIFHFDFERED--GISVEVAMQWNDGFQENIYCFTNNIPQ 170

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ Q
Sbjct: 171 RDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRK 441
           TK KLVS + +  VE+A+ +    +L++NP EA  +   +I+ +  R   RK R    RK
Sbjct: 231 TKDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRK 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  
Sbjct: 291 GALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
           A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 351 ARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNII 389


>gi|291289555|emb|CBH29212.1| BA71V-P1192R (i7R) [African swine fever virus E75]
          Length = 1145

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 106/650 (16%), Positives = 205/650 (31%), Gaps = 88/650 (13%)

Query: 72  KALHHLFSEVIDNAMDEVIAGYANL-----IEVSLDGNGFLTVVDNGRGIPVENHPKFP- 125
            AL  +F E+I NA D   A ++       I++S D  G  +  ++G GIP+  H +   
Sbjct: 52  PALLKIFDELIVNATDHERACHSKTKKVTYIKISFDK-GVFSCENDGPGIPIAKHEQASL 110

Query: 126 ----NKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFS 181
               +    E+      AG   + +   I GG +GVG+ +    S    +T A     + 
Sbjct: 111 IAKRDVYVPEVASCFFLAGTNINKAKDCIKGGTNGVGLKLAMVHSQWAILTTADGAQKYV 170

Query: 182 QKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD-------KAGFDAARLLKMTQSK 234
           Q+ ++ + +         R    TRI   P  +  G        +    +A +       
Sbjct: 171 QQINQRLDIIEPPTITPSREM-FTRIELMPVYQELGYAEPLSETEQADLSAWIYLRACQC 229

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           A   G+  T +  DK       +   + +             L +    +    T K + 
Sbjct: 230 AAYVGKGTTIYYNDKPCRTGSVMALAKMY------------TLLSAPNSTIHTATIKADA 277

Query: 295 KGTHRGTVEWAIAWCEENPEITSYCNTI-LTDEGGTHESGLRVALTRGIKKYAELTQNKR 353
           K      ++ A     +  +         +    G H + L+  +   + K  + T   +
Sbjct: 278 KPYSLHPLQVAAVVSPKFKKFEHVSIINGVNCVKGEHVTFLKKTINEMVIKKFQQTIKDK 337

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
                  D   +   ++   I   E+ GQ K +L   +    V          +L     
Sbjct: 338 NRKTTLRDSCSNIFVVIVGSIPGIEWTGQRKDELSIAEN---VFKTHYSIPSSFLTSMTR 394

Query: 414 EATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
               +L   I +                     +    +  +     A    L   EGDS
Sbjct: 395 SIVDILLQSISK-------------KDNHKQVDVDKYTRARNAGGKRAQDCMLLAAEGDS 441

Query: 474 A----------GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ----------- 512
           A          G S     +     ++ L G I+N     +    ++ +           
Sbjct: 442 ALSLLRTGLTLGKSNPSGPSFDFCGMISLGGVIMNACKKVTNITTDSGETIMVRNXXLTN 501

Query: 513 -------IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH-IASLLLTFFYQEMY 564
                  +  L     C  ++Q     LRY  ++   D D+DG   I  LLL +F+    
Sbjct: 502 NKVLQGIVQVLGLDFNCHYKTQEERAKLRYGCIVACVDQDLDGCGKILGLLLAYFHLFWP 561

Query: 565 DLIEQKHLFLISPPLFRITQGTKS--VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
            LI    +  +  PL R+ +  K+  V  + E+      ++          +  +KGL  
Sbjct: 562 QLIIHGFVKRLLTPLIRVYEKGKTMPVEFYYEQEFDAWAKKQTSLVNH--TVKYYKGLAA 619

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
               ++K      +        ++         ++  +   G +++ R +
Sbjct: 620 HDTHEVKSMFKHFDNMVYT-FTLDD------SAKELFHIYFGGESELRKR 662


>gi|6729168|dbj|BAA89717.1| DNA gyrase subunit B [Actinoplanes missouriensis]
          Length = 395

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 130/398 (32%), Positives = 206/398 (51%), Gaps = 8/398 (2%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
            Y++SGGLHGVG+SVVNALS ++ V + +   ++ QK+    P    +   +  +K G+ 
Sbjct: 2   AYKVSGGLHGVGVSVVNALSTKMAVEIHKAGFVWRQKYDNSKPGPLDK--GETTDKTGST 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYF 265
           + F PDP +F     FD   + +  Q  A+L+  +   ++ ++   A++ G   K  F +
Sbjct: 60  VQFWPDPDVFETV-EFDFQTIYRRLQEMAFLNRGLTINFTDERPVSADENGEARKVTFMY 118

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG+  +++     +S I   +     E        VE A+ W E     + ++ N I T
Sbjct: 119 AGGIADFVRHLNATKSPIHKSVIEFGAEDDA-AGMGVEVAMQWNESYGESVYTFANRINT 177

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
            EGGTHE G R ALT  + KY    +  K    +  +D+      I+SV +REP+F GQT
Sbjct: 178 HEGGTHEEGFRAALTTIVNKYGIEKKFLKGDQKLSGEDIREGLAAIISVTLREPQFEGQT 237

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKT 442
           KTKL + D +  V+    +    +  +NP +A  ++ +           ++ ++   RK+
Sbjct: 238 KTKLGNTDMKSFVQKVANEQLADWFDRNPADAKLIITKADQAARARIAAQQARKLARRKS 297

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
            +    +PGKLADC       TELFIVEGDSAGGSAK  R    QA+LP+RGKILNV  A
Sbjct: 298 LLESGSMPGKLADCQSTDPRETELFIVEGDSAGGSAKSGRESRIQAILPIRGKILNVEKA 357

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             +++  N ++  L+ A+G     ++    LRY K+I+
Sbjct: 358 RIDRVLKNNEVQALITAMGTGIHDEFDLTKLRYHKIIL 395


>gi|190148868|gb|ACE63409.1| DNA gyrase B subunit [Pseudonocardia yunnanensis]
          Length = 398

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 132/404 (32%), Positives = 212/404 (52%), Gaps = 20/404 (4%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD  +Y +SGGLHGVG+SVVNALS  L V +     ++ Q ++R +P 
Sbjct: 1   EVIMTVLHAGGKFDGESYAVSGGLHGVGVSVVNALSVALDVEINTDGFVWRQHYARSVPG 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
              +   +   + G+ +TF PD  IF     F+   + +  Q  A+L+  +      ++ 
Sbjct: 61  PLRK--GEPTKRTGSSVTFWPDGDIFET-LTFNIETIRRRLQEMAFLNKGLTIVLRDERN 117

Query: 251 IAEKYGIP----------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                             ++  F +P GL+ ++    +++  I  ++     E +G    
Sbjct: 118 GDNGEAEEPDAEGYVAKVKEYTFCYPNGLEDFVAHLNKSKDPIHKKLVAYTAEGEGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISI 357
            VE A+ W       + ++ NTI T EGGTHE G R ALT  + +YA   +   ++  ++
Sbjct: 175 AVEVAMQWNSGYTESVYTFANTINTHEGGTHEEGFRSALTTTVNRYARDKKLLKEKDPAL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+SV ++EP+F GQTKTKL + + +  V+    +    +  +NP EA  
Sbjct: 235 SGDDIREGLAAIVSVKVKEPQFEGQTKTKLGNTEVKSFVQRVSNEWLADWFERNPAEAKL 294

Query: 418 LLEWVIER-SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   ++        R+ +  V RK+A     LPGKLADC       +E++IVEGDSAGG
Sbjct: 295 IVNKAVQSAQARAAARKARELVRRKSAGDIGGLPGKLADCRSTDPSKSEVYIVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
           SAK  R+   QA+LP+RGKI+NV  A  +++  N ++  ++ AL
Sbjct: 355 SAKSGRDSMFQAILPIRGKIINVEKARIDRVLKNTEVQAIITAL 398


>gi|308153078|dbj|BAJ22128.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 421

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 133/427 (31%), Positives = 213/427 (49%), Gaps = 37/427 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L V + R    ++Q ++   P   ++   +   + G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLDVDIKRDGFQWNQTYTDSKPGELVK--GEATKETG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------ 258
           T +TF  DP IF     +    + +  Q  A+L+  +    + ++    +          
Sbjct: 59  TTVTFWADPNIFETTV-YSFETVARRLQEMAFLNKGLTITLTDERVSDAEVTEEVVSQVA 117

Query: 259 ---------------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                                +   +++PGGL+ Y++     +  I + +     +  G 
Sbjct: 118 DAPKTAEDESAEADAPAVHKVKTRVYHYPGGLEDYVRHINRTKQPIHNSVVGFTAKGTGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++ 
Sbjct: 178 ---ELEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRSALTATVNKYALDKKLLKEKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             +  DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +
Sbjct: 235 PKLTGDDIREGLAAIISVKVGEPQFEGQTKTKLGNTEVRSFVQKASNEHLSHWFEANPAD 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   +  ++ R+  RK RE V RK+A     LPGKLADC  N    +E++IVEGDS
Sbjct: 295 AKTIVNKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPSKSEIYIVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    L
Sbjct: 355 AGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDIAKL 414

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 415 RYHKLVL 421


>gi|317420190|emb|CBW30252.1| gyrase B subunit [Pseudoalteromonas aliena]
          Length = 387

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 141/396 (35%), Positives = 220/396 (55%), Gaps = 16/396 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS++L +TV R+  +  Q ++ G+P +PL          GT + F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLKLTVRREGKLHEQFYTMGVPDAPLAVIGD-SETTGTELRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F +   F    L K  +  ++L+  V    + ++E        + + F + GG+
Sbjct: 60  WPSGETFTNL-DFHYEILAKRLRELSFLNSGVSIILNDERE------ENKSDHFKYEGGI 112

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           + +++    N++ I   +F    E++     +VE ++ W +     I  + N I   +GG
Sbjct: 113 QAFVEYLNRNKTPIHKGVFHFTHERE-EDGISVEVSMQWNDAYQENIYCFTNNIPQRDGG 171

Query: 329 THESGLRVALTRGIKKYA----ELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           TH +G R ALTR +  Y        + K   +   DD       ++SV + +P+F+ QTK
Sbjct: 172 THLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKFSSQTK 231

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTA 443
            KLVS + +  VE A+ + F  +L++NP++A  ++  +I+ S  R   RK R    RK A
Sbjct: 232 DKLVSSEVKSAVEQAMAEKFTEFLLENPVDAKIVVGKIIDASRAREAARKAREMTRRKGA 291

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +     PGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A 
Sbjct: 292 MDLAGXPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 351

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
            +K+ ++Q++  L+ ALGC   R +Y  E LRY ++
Sbjct: 352 FDKMLSSQEVATLITALGCGIGRDEYNPEKLRYHRI 387


>gi|308152533|dbj|BAJ22245.1| DNA gyrase subunit B [Mycobacterium flavescens]
          Length = 421

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 138/427 (32%), Positives = 214/427 (50%), Gaps = 35/427 (8%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
            +NS Y +SGGLHGVG+SVVNALS  + +T+ R    + Q + R +P     K+     +
Sbjct: 1   GENSGYAVSGGLHGVGVSVVNALSRRVELTILRDGYEWFQYYDRSVPGEL--KQGGKTKE 58

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE--------- 253
            GT + F  DP IF     +D   + +  Q +A+L+  +    + ++  AE         
Sbjct: 59  TGTTVRFWADPDIFETT-EYDFETVARRLQEQAFLNKGLTIELTDERVTAEEVVDEVVSD 117

Query: 254 ----------------KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                           K    +   F++PGGL  +++     ++ I   I     +  G 
Sbjct: 118 TAEAPKTADEKAAENSKPHKVKHRVFHYPGGLVDFVKHINRTKTAIQQSIIDFDGKGPGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRA 354
               VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +     + 
Sbjct: 178 ---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLLKDKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
            ++  DD+      ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP E
Sbjct: 235 PNLTGDDIREGLAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKICNEELTHWFDANPAE 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDS
Sbjct: 295 AKTVVNKAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    L
Sbjct: 355 AGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDISKL 414

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 415 RYHKIVL 421


>gi|308152515|dbj|BAJ22236.1| DNA gyrase subunit B [Mycobacterium moriokaense]
          Length = 419

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 136/424 (32%), Positives = 209/424 (49%), Gaps = 35/424 (8%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y +SGGLHGVG+SVVNALS  L   +      + Q +   IP +   K+ +   K GT
Sbjct: 2   GAYSVSGGLHGVGVSVVNALSTRLEADICTDGYEWFQTYDNSIPGTL--KQGEKTKKTGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK----------- 254
            I F  DP +F     +D   + +  Q  A+L+  +    S ++  A++           
Sbjct: 60  TIRFWADPNVFETTN-YDFETVARRLQEMAFLNKGLTITLSDERVTADEVTDEVVSDTAE 118

Query: 255 --------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                             +   F++PGGL  +++     +S I   I     + +G    
Sbjct: 119 APKSAEEKAAEAAGPHKVKHRTFHYPGGLVDFVKHINRTKSPIHQSIVDFSGKGEGH--- 175

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISI 357
            VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +     +  ++
Sbjct: 176 EVEIALQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLLKDKDPNL 235

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP EA  
Sbjct: 236 TGDDIREGLAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKICNEQLSHWFEANPAEAKT 295

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGG
Sbjct: 296 VVNKAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGG 355

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY 
Sbjct: 356 SAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDISKLRYH 415

Query: 537 KVII 540
           K+++
Sbjct: 416 KIVL 419


>gi|317420198|emb|CBW30256.1| gyrase B subunit [Pseudoalteromonas haloplanktis]
          Length = 390

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 142/399 (35%), Positives = 224/399 (56%), Gaps = 16/399 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS++L +T+ R+  +  Q ++ G+P +PL          GT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKLKLTIRREGKLHEQFYTMGVPDAPLAVIGD-SETNGTE 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F P  + F +   F    L K  +  ++L+  V    S ++E        + + F + 
Sbjct: 60  IRFWPSGETFTNL-DFHYDILAKRLRELSFLNSGVSIILSDERE------ENKSDHFKYE 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG++ +++    N++ +   +F    E++     +VE ++ W +     I  + N I   
Sbjct: 113 GGIRAFVEYLNRNKTPVHKGVFHFTHERE-EDGISVEVSMQWNDAFQENIYCFTNNIPQR 171

Query: 326 EGGTHESGLRVALTRGIKKYA----ELTQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
           +GGTH +G R ALTR +  Y        + K   +   DD       ++SV + +P+F+ 
Sbjct: 172 DGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKFSS 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE A+ + F  +L++NP++A  ++  +I+ +  R   RK R    R
Sbjct: 232 QTKDKLVSSEVKSAVEQAMAEKFTEFLLENPLDAKIVVGKIIDAARAREAARKAREMTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 292 KGAMDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
            A  +K+ ++Q++  L+ ALGC   R +Y  E LRY ++
Sbjct: 352 KARFDKMLSSQEVATLITALGCGIGRDEYDPEKLRYHRI 390


>gi|295388302|gb|ADG03047.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 394

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 149/404 (36%), Positives = 229/404 (56%), Gaps = 15/404 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGV +SVVNALS+++ +T+ R   I +Q +  G P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVDVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+I F P  + F +   F    L K  +  ++L+  V      ++E        +++ F
Sbjct: 60  GTQIRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KQDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ ++Q    N++ I  +IF    E++     +VE A+ W +     I  + N I
Sbjct: 113 MYEGGIQAFVQHLNTNKTPIIEKIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+
Sbjct: 171 PQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE+A+ +    +LV+NP EA  +   +I+ +  R   RK R    
Sbjct: 231 SQTKDKLVSSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYYNIIIMT 394


>gi|12644442|sp|Q44088|GYRB_ACILW RecName: Full=DNA gyrase subunit B
 gi|12644445|sp|Q44272|GYRB_ACIG9 RecName: Full=DNA gyrase subunit B
 gi|4514413|dbj|BAA75405.1| DNA gyrase subunit B [Acinetobacter sp.]
 gi|4514425|dbj|BAA75411.1| DNA gyrase subunit B [Acinetobacter lwoffii]
          Length = 390

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 142/401 (35%), Positives = 220/401 (54%), Gaps = 16/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS++L +T+ R   I  Q++  G    PL+      N+ G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLELTIHRAGKIHEQEYRHGDSQYPLKVVGDT-NRTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           TR+ F P  + F     F+   L +  +  ++L+  V+     ++  AE         F 
Sbjct: 60  TRVRFWPSAETFSQTI-FNVDILARRLRELSFLNAGVRIVLRDERINAE-------HVFD 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   E ++ ++        +       TVE A+ W +     +  + N I 
Sbjct: 112 YEGGLSEFVKYINEGKTHLNDIFHFTAAQADN--GITVEVALQWNDSYQENVRCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y +      K  +++  DD       I+SV + +P+F+ 
Sbjct: 170 QKDGGTHLAGFRAALTRGLNNYMDSENILKKEKVAVSGDDAREGLTAIVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNR 440
           QTK KLVS + +  VE A+   F  YL++NP  A  +   +I+ +  R   RK      R
Sbjct: 230 QTKEKLVSSEVKTAVEQAMNKAFSEYLLENPQAAKAIAGKIIDAARARDAARKAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV 
Sbjct: 290 KSALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +++ ++ ++  L+ ALGC   R +Y  + LRY K+II
Sbjct: 350 RARFDRMISSAEVGTLITALGCGIGREEYNPDKLRYHKIII 390


>gi|12644437|sp|Q43907|GYRB_ACIBA RecName: Full=DNA gyrase subunit B
 gi|4514405|dbj|BAA75401.1| DNA gyrase subunit B [Acinetobacter baumannii]
          Length = 388

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 142/400 (35%), Positives = 218/400 (54%), Gaps = 17/400 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +LH+T+ R   I  Q++  G P  PL    +  +  G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSSKLHLTIYRAGQIHEQEYHHGDPQYPLRVIGET-DNTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F     F+   L +  +  ++L+  V+     ++   E         + 
Sbjct: 60  TTVRFWPSAETFSQTI-FNVEILARRLRELSFLNAGVRIVLRDERINLE-------HVYD 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   E ++ ++           G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLSEFVKYINEGKNHLNEIFHFTADADNGI---AVEVALQWNDSYQENVRCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+ +Y E      K  +++  DD       I+SV + +P+F+ 
Sbjct: 169 QKDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNR 440
           QTK KLVS + +  VE A+   F  YL++NP  A  +   +I+ +  R   RK      R
Sbjct: 229 QTKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV 
Sbjct: 289 KSALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY K+I
Sbjct: 349 RARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKII 388


>gi|116874218|gb|ABK30798.1| DNA gyrase subunit B [Photorhabdus temperata]
          Length = 365

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 137/375 (36%), Positives = 206/375 (54%), Gaps = 15/375 (4%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS++L + + R   +  Q +  G+P SPL+   +   + GTR+ F P
Sbjct: 1   GGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGET-EQTGTRVRFWP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
               F +   F    L K  +  ++L+  V       +   E       + F++ GG+K 
Sbjct: 60  SMDTFSNNTEFQHDILAKRLRELSFLNSGVSIRLLDKRTNIE-------DHFHYKGGIKA 112

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++   +N++ I   +F   TEK       VE A+ W +     I  + N I   +GGTH
Sbjct: 113 FVEFLNKNKTPIHPNVFYFSTEKDSI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTH 169

Query: 331 ESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R A+TR +  Y +      K  +S   DD     V ++SV + +P+F+ QTK KLV
Sbjct: 170 LVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLV 229

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447
           S + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+   
Sbjct: 230 SSEVKTAVETLMNEKLVEYLLENPNDAKTVVGKIIDAARAREAARKAREMTRRKGALDLA 289

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+
Sbjct: 290 GLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 349

Query: 508 RNNQQIMDLVQALGC 522
            ++Q++  L+ ALGC
Sbjct: 350 LSSQEVATLITALGC 364


>gi|308153080|dbj|BAJ22129.1| DNA gyrase subunit B [Rhodococcus fascians]
          Length = 421

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 135/427 (31%), Positives = 214/427 (50%), Gaps = 37/427 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS ++ + +AR    + Q +    P  PLE         G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTKVELQIARDGHRYKQTYDYAKP-GPLETVGDTTE-TG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T + F  D KIF     +    + +  Q  A+L+  +   ++ ++               
Sbjct: 59  TTVRFWADGKIFET-LDYSFETVHRRLQEMAFLNKGLTINFTDERVAATDATEEELGETA 117

Query: 250 ------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                         A K     K  +++P GL  +++     ++ I + +     + +G 
Sbjct: 118 EAPKTAEEEQADAAAAKPTKVRKRTYHYPDGLVDFVKHINRTKTAIHNSVVGFTGKGEGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++ 
Sbjct: 178 ---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRTALTSTVNKYAIEKKLVKEKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           + +  DD+      ++SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +
Sbjct: 235 VKLTGDDIREGLAAVISVRVGEPQFEGQTKTKLGNTEIRSFVQKACNEHLSHWFESNPAD 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   +  ++ R+  RK RE V RK+A     LPGKLADC  N    +E++IVEGDS
Sbjct: 295 AKTIINKAVSSAQARMAARKARELVRRKSATDIGGLPGKLADCRSNDPSKSEIYIVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    L
Sbjct: 355 AGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKL 414

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 415 RYHKIVL 421


>gi|126035364|gb|ABN72435.1| gyrase B subunit [Vibrio parahaemolyticus]
          Length = 389

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 148/399 (37%), Positives = 225/399 (56%), Gaps = 15/399 (3%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K GT+I 
Sbjct: 1   QVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKTGTQIR 59

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F P  + F +   F    L K  +  ++L+  V      ++E        +++ F + GG
Sbjct: 60  FWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KQDHFMYEGG 112

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           ++ ++Q    N++ I  +IF    E++     +VE A+ W +     I  + N I   +G
Sbjct: 113 IQAFVQHLNTNKTPIIEKIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNNIPQRDG 170

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QTK 
Sbjct: 171 GTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKD 230

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAI 444
           KLVS + +  VE+A+ +    +LV+NP EA  +   +I+ +  R   RK R    RK A+
Sbjct: 231 KLVSSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGAL 290

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  
Sbjct: 291 DLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARF 350

Query: 505 EKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
           +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 351 DKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 389


>gi|6729174|dbj|BAA89720.1| DNA gyrase subunit B [Actinoplanes utahensis]
          Length = 396

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 126/400 (31%), Positives = 205/400 (51%), Gaps = 8/400 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG+SVVNALS  + V + +    + QK+   +P   ++   +  ++ G
Sbjct: 1   GQAYKVSGGLHGVGVSVVNALSTRMAVEIQKDGFFWRQKYDYSVPGELVK--GEPTDQAG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           + + F PDP+IF     FD   + +  Q  A+L+  +   ++  + +  ++ G P K  F
Sbjct: 59  STVQFWPDPEIFETV-DFDYQTIYRRLQEMAFLNRALTINYTDQRPDQVDENGEPRKVTF 117

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            +  G+  +++     +S I   +   + E        VE A+ W E     + ++ N I
Sbjct: 118 MYEDGIADFVRHLNATKSAIHKTVIQFEAEAPEE-GMAVEIAMQWNESYGESVYTFANRI 176

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAG 381
            T EGGTHE G R ALT  + +Y    +  K    +  +D+      I+SV +  P+F G
Sbjct: 177 NTHEGGTHEEGFRAALTSIVNRYGVEKKFLKGDQKLSGEDIREGLAAIISVTLANPQFEG 236

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNR 440
           QTKTKL + D +  V+    +    +  +NP +A  ++ +           ++ ++   R
Sbjct: 237 QTKTKLGNTDMKGFVQKVCNEQLADWFDRNPADAKLIITKADQAARARIAAQQARKLARR 296

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+ +    +PGKLADC       TELFIVEGDSAGGSAK  R    QA+LP+RGKILNV 
Sbjct: 297 KSLLESGSMPGKLADCQSTDPRETELFIVEGDSAGGSAKSGRESRIQAILPIRGKILNVE 356

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +++  N ++  L+ A+G     ++    LRY K+I+
Sbjct: 357 KARIDRVLKNNEVQALITAMGTGIHDEFDISKLRYHKIIL 396


>gi|83854015|gb|ABC47945.1| gyrase B subunit [Plesiomonas shigelloides]
          Length = 382

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 144/394 (36%), Positives = 220/394 (55%), Gaps = 17/394 (4%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALSD+L + + R+  + +Q++  G P++PL       N  GT++ F P
Sbjct: 1   GGLHGVGVSVVNALSDKLELMIRREGKVHTQEYHLGEPVAPLAVVGDT-NATGTQVRFWP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
            P IF +   F    L K  +  ++L+  V       +         +++ F + GG++ 
Sbjct: 60  SPTIFTNI-EFQYEILAKRLRELSFLNSGVSIHLLDKR-------NDKQDHFKYEGGIQA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTH 330
           +++    N++ I  ++    +EK G     VE A+ W +   E    + N I   +GGTH
Sbjct: 112 FVEYLNRNKNPIHDKVCYFSSEKDGI---GVEVALQWNDGFQENLYCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R A+TR +  Y E      K  I++  DD       ++SV + +P+F+ QTK KLV
Sbjct: 169 LAGFRAAMTRTLNAYIEKEGFAKKAKINMTGDDSREGLTAVISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447
           S + +  VE+ + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+   
Sbjct: 229 SSEVKPAVESLMGERLQEYLLENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLG 288

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +      EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+
Sbjct: 289 GLPGKLADCQERDPALFELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 348

Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 349 LSSQEVATLITALGCGIGRDEYNPDKLRYHSIII 382


>gi|198042702|gb|ACH81176.1| GyrB [Pseudoalteromonas sp. UST981101-004]
          Length = 381

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 137/387 (35%), Positives = 217/387 (56%), Gaps = 15/387 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS++L +TV R+  +  Q ++ G+P +PL          
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKLKLTVRREGKLHEQFYTMGVPDAPLAVIGD-SETT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F P  + F +   F    L K  +  ++L+  V    + ++E        + + F
Sbjct: 60  GTELRFWPSAETFTNL-DFHYDILAKRLRELSFLNSGVSIILNDERE------ENKSDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ +++    N++ I   +F    E+      +VE ++ W +     I  + N I
Sbjct: 113 KYEGGIQAFVEYINRNKTPIHKGVFHFTHER-VEDGISVEVSMQWNDAYQENIYCFTNNI 171

Query: 323 LTDEGGTHESGLRVALTRGIKKYA----ELTQNKRAISIISDDLMISAVGILSVFIREPE 378
              +GGTH +G R ALTR +  +        + K   +   DD       ++SV + +P+
Sbjct: 172 PQRDGGTHLAGFRSALTRTLNNFMEKEGFNKKAKTTSNATGDDAREGLTAVISVKVPDPK 231

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-E 437
           F+ QTK KLVS + +  VE A+ + F  +L++NP++A  ++  +I+ S  R   RK R  
Sbjct: 232 FSSQTKDKLVSSEVKSAVEQAMAEKFTEFLLENPVDAKIVVGKIIDASRAREAARKAREM 291

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
             RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKIL
Sbjct: 292 TRRKGAMDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKIL 351

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRT 524
           NV  A  +K+ ++Q++  L+ ALGC  
Sbjct: 352 NVEKARFDKMLSSQEVATLITALGCGI 378


>gi|119226180|dbj|BAF41069.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 421

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 133/427 (31%), Positives = 212/427 (49%), Gaps = 37/427 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L V + R    ++Q ++   P   ++   +   + G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLDVDIKRDGFQWNQTYTDLKPGELVK--GEATKETG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------ 258
           T  TF  DP IF     +    + +  Q  A+L+  +    + ++    +          
Sbjct: 59  TTATFWADPNIFETTV-YSFETVARRLQEMAFLNKGLTITLTDERVSDAEVTEEVVSQVA 117

Query: 259 ---------------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                                +   +++PGGL+ Y++     +  I + +     +  G 
Sbjct: 118 DAPKTAEDESAEADAPAVHKVKTRVYHYPGGLEDYVRHINRTKQPIHNSVVGFTAKGTGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++ 
Sbjct: 178 ---ELEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRSALTATVNKYALDKKLLKEKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             +  DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +
Sbjct: 235 PKLTGDDIREGLAAIISVKVGEPQFEGQTKTKLGNTEVRSFVQKASNEHLSHWFEANPAD 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   +  ++ R+  RK RE V RK+A     LPGKLADC  N    +E++IVEGDS
Sbjct: 295 AKTIVNKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPSKSEIYIVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    L
Sbjct: 355 AGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDIAKL 414

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 415 RYHKIVL 421


>gi|119226146|dbj|BAF41052.1| DNA gyrase subunit B [Mycobacterium diernhoferi]
          Length = 420

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 132/426 (30%), Positives = 212/426 (49%), Gaps = 35/426 (8%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           +   Y++SGGLHGVG+SVVNALS  L   V R    + Q + + +P +   ++ +   K 
Sbjct: 1   EEGAYQVSGGLHGVGVSVVNALSTRLEADVCRDGYEWFQTYDKSVPGTL--RQGEKTKKT 58

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-------------- 249
           G+ I F  DP IF     +D   + +  Q  A+L+  +    + ++              
Sbjct: 59  GSTIRFWADPDIFETTT-YDFETIARRLQEMAFLNKGLTIELTDERVAPASVVDEVVSDH 117

Query: 250 -----------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH 298
                        A      +   F++PGGL  +++     ++ I   +   + +  G  
Sbjct: 118 AEAPKSADEKAAEAAAPQKVKHRVFHYPGGLVDFVKHINRTKTAIQPSVIDFEGKGPGH- 176

Query: 299 RGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAI 355
              VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +     +  
Sbjct: 177 --EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKDKDP 234

Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415
           ++  DD+      ++SV +++P+F GQTKTKL + + +  V+    +   H+   NP EA
Sbjct: 235 NLTGDDIREGLAAVISVKVQQPQFEGQTKTKLGNTEVKSFVQKICNEELQHWFDANPAEA 294

Query: 416 TKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSA 474
             ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSA
Sbjct: 295 KTVVNKAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSA 354

Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
           GGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LR
Sbjct: 355 GGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDLAKLR 414

Query: 535 YEKVII 540
           Y K+++
Sbjct: 415 YHKIVL 420


>gi|324331794|gb|ADY38683.1| DNA gyrase subunit B [Ignatzschineria indica]
          Length = 376

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 138/387 (35%), Positives = 215/387 (55%), Gaps = 16/387 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           ISGGLHGVG+SVVNALS +L +T+ +   I  Q+++ G P  PL +  +  +K GT + F
Sbjct: 2   ISGGLHGVGVSVVNALSSKLKLTIYKHGKIHEQEYTLGDPDYPLREIGET-DKTGTTVYF 60

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +P  ++F +   FD   L K  +  A+L+  ++     +++  E       + F + GG+
Sbjct: 61  KPSKEVFNNI-DFDYDTLYKRLRELAFLNSGIRITLRDERDDRE-------DVFQYEGGI 112

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K Y++   +NR+ I  +IF    +K      +VE ++ W +     +  Y N I   +GG
Sbjct: 113 KAYVELINKNRNKIHPQIFYCNCQKDNI---SVEISLQWTDGYQESVFCYTNNIPQSDGG 169

Query: 329 THESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R A+TR + +Y +     +        DD       I+SV I  P+F+ QTK K
Sbjct: 170 THLAGFRAAMTRTLNRYMQEEGLLKKTKVATTGDDAREGLTAIISVKIPGPKFSSQTKEK 229

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIR 445
           LVS + +  V++ L +  + +L++ P +A  +   +I+ +  R   RK RE   RK+A+ 
Sbjct: 230 LVSSEVRPVVDSILAERLEEFLLERPEDAKAITSKIIDAAMAREAARKARENTRRKSALD 289

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC +     +ELFIVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +
Sbjct: 290 IAGLPGKLADCQEKDPAKSELFIVEGDSAGGSAKQGRSRKFQAILPLKGKILNVERARFD 349

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREED 532
           ++ ++ +I  L+ ALGC       + D
Sbjct: 350 RMISSAEIGTLITALGCGIGRDEFDPD 376


>gi|29652918|gb|AAO87428.1| DNA gyrase B [Listeria monocytogenes]
          Length = 193

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 84/192 (43%), Positives = 117/192 (60%), Gaps = 2/192 (1%)

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +R +    + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+L
Sbjct: 4   AKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAIL 63

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           P+RGKILNV  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAH
Sbjct: 64  PIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAH 123

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           I +LLLT FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  
Sbjct: 124 IRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQVEYVYSDGQLEDYLASL--DGDT 181

Query: 611 KIEISRFKGLGE 622
           K  I R+KGLGE
Sbjct: 182 KYSIQRYKGLGE 193


>gi|187471789|gb|ACD11205.1| DNA gyrase B subunit [Nocardia sp. W7467]
 gi|187471791|gb|ACD11206.1| DNA gyrase B subunit [Nocardia sp. W7811]
          Length = 416

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 130/422 (30%), Positives = 216/422 (51%), Gaps = 33/422 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS  +   + R    +SQ++    P   ++   +  ++ G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSRMVTEIDRDGFHWSQEYKDAKPGKLVK--GEPTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC---------DKEIAEKY 255
           T   F  DP +F     ++   + +  Q  A+L+  +    +          D+ ++E  
Sbjct: 59  TTQRFWADPDVFETTT-YNFETISRRLQEMAFLNKGLTITLTDQRVSEAEVTDEVVSETA 117

Query: 256 GIPEKE--------------EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
             P+ +               +++PGGL+ +++     +  I + +    ++  G     
Sbjct: 118 EAPKHDEGTAAAPEPKVKTRTYHYPGGLEDFVKHINRTKQPIHNTVVAFTSKGTGH---E 174

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISII 358
           +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +   ++  ++ 
Sbjct: 175 LEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLT 234

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+      I+SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  +
Sbjct: 235 GDDIREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTI 294

Query: 419 LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           ++  +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGS
Sbjct: 295 VQKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGS 354

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K
Sbjct: 355 AKSGRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDISKLRYHK 414

Query: 538 VI 539
           ++
Sbjct: 415 IV 416


>gi|85541237|gb|ABC70859.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 379

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 139/389 (35%), Positives = 212/389 (54%), Gaps = 16/389 (4%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS +L + + R   I  Q +  G+P +PL       +K GT + F P 
Sbjct: 1   GLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWPS 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            + F +   F+   L K  +  ++L+  V       ++  E       + F++ GG+K +
Sbjct: 60  HETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAF 112

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH 
Sbjct: 113 VEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 169

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS
Sbjct: 170 AGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 229

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLR 448
            + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ R    RK A+    
Sbjct: 230 SEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAG 289

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADC +     +EL++VEGDSAGG AKQ RNR N A+LPL+GKILNV  A  +K+ 
Sbjct: 290 LPGKLADCQERDPALSELYLVEGDSAGGFAKQGRNRKNPAILPLKGKILNVEKARFDKML 349

Query: 509 NNQQIMDLVQALGCRT-RSQYREEDLRYE 536
           ++Q++  L+ ALGC   R +Y  + LRY 
Sbjct: 350 SSQEVATLITALGCGIGRDEYNPDKLRYH 378


>gi|213420236|ref|ZP_03353302.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 115

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 60/115 (52%), Positives = 87/115 (75%), Gaps = 2/115 (1%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
           S++YD+SSI++L+GL+ VR RPGMYIG TD+   LHH+  EV+DNA+DE +AG+   I V
Sbjct: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
           ++  +  ++V D+GRGIP   HP+    S  E+I+T LHAGGKFD+++Y++SGGL
Sbjct: 62  TIHADNSVSVTDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115


>gi|164608604|gb|ABY62593.1| DNA gyrase beta subunit [Aliivibrio wodanis]
          Length = 399

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 147/408 (36%), Positives = 219/408 (53%), Gaps = 14/408 (3%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R+  IF Q +  G P +PL      
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIHRKGEIFQQTYCHGEPQAPLAVVGTT 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
                    +  D         F    L K  +  ++L+  V       +E        +
Sbjct: 61  DTTGTKIRFWPSDQT--FTNVEFVYDILAKRLRELSFLNSGVSIILQDMRE------EDK 112

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
            + F F GG++ ++     N++ +  +IF   +E+K      VE A+ W +     I  Y
Sbjct: 113 SDHFMFEGGIQAFVTHLNRNKTPVHQKIFYFDSERK-EDGIVVEVAMQWNDSYQENIFCY 171

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GG H SG R ALTR +  + +      K   S   DD       ++SV + +
Sbjct: 172 TNNIPQRDGGAHLSGFRSALTRTLNSFMDKEGFSKKAKSSASGDDAREGLTAVVSVKVPD 231

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQ 435
           P+F+ QTK KLVS + +  VE+A+ +    +L +NP EA  +   +I+        R+ +
Sbjct: 232 PKFSSQTKDKLVSSEVKSAVESAMNEKLAEFLAENPGEAKMVCSKIIDAARAREAARKAR 291

Query: 436 REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
               RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GK
Sbjct: 292 EMTRRKGALDIAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGK 351

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
           ILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 352 ILNVEKARFDKMISSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMT 399


>gi|225547686|gb|ACN93656.1| DNA gyrase subunit B [Nocardia sp. W8027]
 gi|225547688|gb|ACN93657.1| DNA gyrase subunit B [Nocardia sp. W8681]
 gi|225547690|gb|ACN93658.1| DNA gyrase subunit B [Nocardia sp. W9071]
 gi|225547692|gb|ACN93659.1| DNA gyrase subunit B [Nocardia sp. W9241]
          Length = 417

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 134/423 (31%), Positives = 213/423 (50%), Gaps = 33/423 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L   +      +SQ +    P      + +   K G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLEAEIDHDGYHWSQTYKDATPGKL--IQGEATKKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T I F  DP+IF     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTIRFWADPEIFETTT-YNFETVARRLQEMAFLNKGLTIKLTDERVSDADVTDEVVSETA 117

Query: 250 ---EIAEKYGIP-----EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
              + AE+   P     +   + +PGGL+ +++     +  I + +     +  G     
Sbjct: 118 EAPKHAEEGAAPAEHKVKTRTYNYPGGLEDFVRHINRTKQPIHNSVVAFTGKGTGH---E 174

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISII 358
           +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +   ++  ++ 
Sbjct: 175 LEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLT 234

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+      I+SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  +
Sbjct: 235 GDDIREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTI 294

Query: 419 LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           +   +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGS
Sbjct: 295 VNKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGS 354

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  R+   QA+LPLRGKI+NV  A  +K+  N ++  ++ A G     ++    LRY K
Sbjct: 355 AKSGRDSMYQAILPLRGKIINVEKARIDKVLKNNEVQSIITAFGTGIHDEFDISKLRYHK 414

Query: 538 VII 540
           +++
Sbjct: 415 IMM 417


>gi|6729176|dbj|BAA89721.1| DNA gyrase subunit B [Couchioplanes caeruleus]
          Length = 396

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 126/400 (31%), Positives = 206/400 (51%), Gaps = 8/400 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V + +   ++ QK++   P    +   +  +  G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKSGNVYRQKYNASKPGPLEK--GEATDTTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA-EKYGIPEKEEF 263
           + + F PDP IF     FD   + +  Q  A+L+  +      ++ ++ ++ G P +  F
Sbjct: 59  STVQFWPDPTIFETV-EFDFQTIYRRIQEMAFLNKGLTINLVDERPVSLDEEGNPRRVTF 117

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            +  G+  +++     +S I   +   + E        +E A+ W E     + ++ NTI
Sbjct: 118 MYENGIADFVRHLNHTKSPIHKSVIEFEAEANDE-GMALEIAMQWNESYGESVYTFANTI 176

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAG 381
            T EGGTHE G R ALT  + +Y    +  K    +  +D+      I+SV +  P+F G
Sbjct: 177 NTHEGGTHEEGFRAALTSIVNRYGAEKKFLKSDEKLSGEDIREGLAAIISVKLANPQFEG 236

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNR 440
           QTKTKL + D +  V+    +    +  +NP +A +++ +           ++ ++   R
Sbjct: 237 QTKTKLGNTDMKGFVQKVANEQIADWFDRNPADAKQIITKASQAARARIAAQQARKLARR 296

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+ +    +PGKLADC       +ELFIVEGDSAGGSAKQ R+   QA+LP+RGKILNV 
Sbjct: 297 KSLLESGSMPGKLADCQSTDPRVSELFIVEGDSAGGSAKQGRDSQIQAILPIRGKILNVE 356

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +++  N ++  L+ ALG     ++    LRY KV++
Sbjct: 357 KARIDRVLKNNEVQSLITALGTGIHDEFDIAKLRYHKVVL 396


>gi|211927093|dbj|BAG82799.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 421

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 132/427 (30%), Positives = 210/427 (49%), Gaps = 37/427 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS  L V +      + Q ++   P      + +   + G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTILEVEIDNDGYHWEQTYTASKPGEL--VRGEATKRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------ 258
           T + F PDP+IF     F+   + +  Q  A+L+  +    + ++   E+          
Sbjct: 59  TTVRFWPDPEIFETTT-FNFETVARRLQEMAFLNKGLTITLTDERVAPEEVTEEDVPDTA 117

Query: 259 ---------------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                                +   +++PGGL+ Y++     ++ I + +     +  G 
Sbjct: 118 DAPKTAEDQAVEAAEPEVHKVKVRTYHYPGGLEDYVRHINRTKTPIHNSVVGFTAKGTGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRA 354
               +E A+ W       + ++ NTI T EGGTHE G R ALT  + +Y   +    ++ 
Sbjct: 178 ---ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNRYAKDKKLLKEKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
            ++  DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +
Sbjct: 235 PNLTGDDIREGLAAIISVKVAEPQFEGQTKTKLGNTEVKSFVQKACNEHISHWFEANPAD 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   +  +  R+  RK RE V RK+A     LPGKLADC        E++IVEGDS
Sbjct: 295 AKTIVTKAVSSAHARVAARKARELVRRKSATDIGGLPGKLADCRSKDPSKCEIYIVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +K+  N ++  ++ A G     ++    L
Sbjct: 355 AGGSAKSGRDSMYQAILPLRGKIINVEKARIDKVLKNAEVQSIITAFGTGIHEEFDIAKL 414

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 415 RYHKIVL 421


>gi|27530813|dbj|BAC54054.1| DNA gyrase subunit B [Rhodococcus fascians]
          Length = 421

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 135/427 (31%), Positives = 214/427 (50%), Gaps = 37/427 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS ++ + +AR    + Q +    P  PLE         G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTKVELQIARDGHRYKQTYDYAKP-GPLETVGDTTE-TG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE----- 259
           T + F  D KIF     +    + +  Q  A+L+  +   ++ ++  A      E     
Sbjct: 59  TTVRFWADGKIFETL-DYSFETVHRRLQEMAFLNKGLTINFTDERVAATDATEEELGETA 117

Query: 260 ----------------------KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                                 K  +++P GL  +++     ++ I + +     + +G 
Sbjct: 118 EAPKTAEEEQADAANAKPAKVRKRTYHYPDGLVDFVKHINRTKTAIHNSVVGFTGKGEGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++ 
Sbjct: 178 ---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRTALTSTVNKYAIEKKLVKEKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           + +  DD+      ++SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +
Sbjct: 235 VKLTGDDIREGLAAVISVRVGEPQFEGQTKTKLGNTEIRSFVQKACNEHLSHWFESNPAD 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   +  ++ R+  RK RE V RK+A     LPGKLADC  N    +E++IVEGDS
Sbjct: 295 AKTIINKAVSSAQARMAARKARELVRRKSATDIGGLPGKLADCRSNDPSKSEIYIVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    L
Sbjct: 355 AGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKL 414

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 415 RYHKIVL 421


>gi|209973186|gb|ACJ03856.1| DNA gyrase B subunit [Leptospira interrogans]
          Length = 145

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 70/147 (47%), Positives = 103/147 (70%), Gaps = 2/147 (1%)

Query: 60  MRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119
            RPGMYIG  DE  LH +  EV+DN++DE +AG+   I++S+  +  + V DNGRGIPV+
Sbjct: 1   KRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEIKISILPDNIVEVKDNGRGIPVD 60

Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179
            HP     ST+E+++T LHAGGKF+N  Y++SGGLHGVG+SVVNALS+ L V V ++  +
Sbjct: 61  IHP-DKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYLEVEVHQKGKV 119

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           ++QK+ +G+P+S ++ +       GT 
Sbjct: 120 YTQKYEKGVPVSSVQIQGDSSE-SGTM 145


>gi|157073801|dbj|BAF79899.1| gyrase B [Methylobacterium radiotolerans JCM 2831]
          Length = 399

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 146/408 (35%), Positives = 221/408 (54%), Gaps = 21/408 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS  L + + R +   + +F  G  ++PLE       +RG
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSSWLRLRIWRNDKEHAMEFRHGDAVAPLEVIGPGNGRRG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF P  + F     FD A L K  +  A+L+  V+   +  +   +K      EE Y
Sbjct: 61  TEVTFLPSTETF-TMIEFDYATLEKRLRELAFLNSGVRIVLTDARHAEKKR-----EELY 114

Query: 265 FPGGLKTYLQTKLENRSLIS--SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           + GG++ +++    +R  I   +      +E+ G     VE A  W +     +  + N 
Sbjct: 115 YEGGIEAFVRYLDRSRKPIDGMTSPVVVSSERDGI---RVEVAFWWNDSFNETVLPFTNN 171

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R ALTR +  YAE +    K  +S+  +D       ++SV + +P+F
Sbjct: 172 IPQRDGGTHMAGFRAALTRQVTGYAESSGIAKKEKVSLTGEDCREGLTAVISVQVPDPKF 231

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV- 438
           + QTK KLVS + +  VEN L +    +L +NP +A  ++  V+  +  R   RK RE  
Sbjct: 232 SSQTKDKLVSSEVRPAVENVLNEGLSTWLEENPSQARSVMGKVVLAASAREAARKARETV 291

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +      E+ +VEGDSAGGSAKQ R+R+ QAVLPLRGKILN
Sbjct: 292 TRKGALDIASLPGKLADCQERDPTKCEILLVEGDSAGGSAKQGRDRTFQAVLPLRGKILN 351

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVII 540
           V    ++++ ++ +I  L+ ALG         R  +  E LRY ++II
Sbjct: 352 VERVRADRMLSSAEIGTLITALGAGIGRSSTDREGFNPEKLRYHRIII 399


>gi|82940548|emb|CAJ44282.1| gyrase B protein [Vibrio chagasii]
          Length = 393

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 145/400 (36%), Positives = 220/400 (55%), Gaps = 15/400 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +  G P SPL       ++ 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYHHGEPQSPLAVIGDT-DQT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT I F P  + F +   F    L K  +  ++L+  V      ++E        + + F
Sbjct: 60  GTEIRFWPSEETFSNVL-FHYDILAKRLRELSFLNSGVSIKLIDERE------EDKSDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            F GG++ ++     N++ I  +IF    E++     TVE A+ W +     I  + N I
Sbjct: 113 MFEGGIQAFVDHLNTNKTPIIQKIFHFDHERED--GITVEVAMQWNDGYQENIYCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+
Sbjct: 171 PQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVN 439
            QTK KLVS + +  VE A+ +    +L++NP EA  +   +I+ +  R   RK      
Sbjct: 231 SQTKDKLVSSEVKSAVEQAMGEKLSEFLIENPTEAKTVCTKIIDAARARDAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNI 390


>gi|306517909|emb|CBL53378.1| gyrase B subuni [Photobacterium sp. CECT 7614]
          Length = 384

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 137/391 (35%), Positives = 212/391 (54%), Gaps = 14/391 (3%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS+++ +T+ R   I  Q +  G P +PL       ++ GT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSEKVELTIHRGGHIHQQIYHHGEPQAPLAVIGDT-DRTGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           RI F P    F +   F    L K  +  ++L+  V      ++E        + + F +
Sbjct: 60  RIRFWPSADTFTNI-EFHYEILAKRLRELSFLNSGVSIKLIDERE------EGKMDHFMY 112

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG++ ++Q    N++ I  ++F    E++      VE A+ W +     I  + N I  
Sbjct: 113 EGGIQAFVQHLNRNKTPIHQKVFHFNLERED--GIAVEVAMQWNDGFQENIYCFTNNIPQ 170

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ Q
Sbjct: 171 RDGGTHLAGFRGALTRTLNNFMDKEGYSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRK 441
           TK KLVS + +  VE+ + +    +L++NP +A  +   +I+ S  R   RK R    RK
Sbjct: 231 TKDKLVSSEVKPAVESTMGEKLSEFLLENPSDAKTVCTKIIDASRAREAARKAREMTRRK 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  
Sbjct: 291 GALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           A  +K+ ++Q++  L+ A+GC         D
Sbjct: 351 ARFDKMLSSQEVATLITAMGCGIGRDEYNPD 381


>gi|66474509|gb|AAY46824.1| GyrB [Aeromonas schubertii]
          Length = 385

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 145/396 (36%), Positives = 222/396 (56%), Gaps = 16/396 (4%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           G+FD+++Y++SGGL GVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++     
Sbjct: 1   GEFDDNSYKVSGGLDGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT 60

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
              GT + F P P IF D   F    L K  +  ++L+  V      +++  E       
Sbjct: 61  -TTGTEVRFWPSPTIFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE------- 111

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
             F + GG+K +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + 
Sbjct: 112 AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFT 168

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH  G R ALTR +  Y +      K   +   DD+    + ++SV + +P
Sbjct: 169 NNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDP 228

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F+ QTK KLVS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE
Sbjct: 229 KFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARE 288

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKI
Sbjct: 289 LTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKI 348

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           LNV  A  +K+ ++Q++  L+ ALGC         D
Sbjct: 349 LNVEKARFDKMISSQEVGTLITALGCGIGRDEYNPD 384


>gi|29652948|gb|AAO87443.1| DNA gyrase B [Listeria monocytogenes]
          Length = 164

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 76/164 (46%), Positives = 104/164 (63%), Gaps = 2/164 (1%)

Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523
           +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I  N++I  +  A+G  
Sbjct: 3   SELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEEIRTIFTAMGTG 62

Query: 524 TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT 583
               +     RY K+IIMTDADVDGAHI +LLLT FY+ M  L++  ++++  PPL++I 
Sbjct: 63  FGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIK 122

Query: 584 QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
            G +  Y + +   +  L      G  K  I R+KGLGEM   Q
Sbjct: 123 HGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYKGLGEMNPEQ 164


>gi|259018126|gb|ACV89655.1| DNA gyrase subunit B [Nocardia pneumoniae]
          Length = 414

 Score =  210 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 131/420 (31%), Positives = 209/420 (49%), Gaps = 33/420 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L   + R    +SQ +    P      + +   K G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLEAEIDRDGYHWSQTYKDATPGKL--VQGEPTKKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK---------- 254
           T I F  DP++F     ++   + +  Q  A+L+  +    + ++    +          
Sbjct: 59  TTIRFWADPEVFETTT-YNFETVARRLQEMAFLNKGLTIKLTDERVSDSEVIDEVVSETA 117

Query: 255 -------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
                            +   +++PGGL+ +++     +  I + +     +  G     
Sbjct: 118 EAPKHADQNGAAAEHKVKTRTYHYPGGLEDFVRHINRTKQPIHNSVVGFTGKGTGH---E 174

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISII 358
           +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +   ++  ++ 
Sbjct: 175 LEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLT 234

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+      I+SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  +
Sbjct: 235 GDDIREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTI 294

Query: 419 LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           +   +  ++ R+  RK RE V RK+A     LPGKLADC     H +E++IVEGDSAGGS
Sbjct: 295 VNKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPHKSEIYIVEGDSAGGS 354

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  R+   QA+LP+RGKI+NV  A  +K+  N ++  ++ A G     ++    LRY K
Sbjct: 355 AKSGRDSMYQAILPIRGKIINVEKARIDKVLKNNEVQSIITAFGTGIHDEFDISKLRYHK 414


>gi|209973184|gb|ACJ03855.1| DNA gyrase B subunit [Leptospira interrogans]
          Length = 145

 Score =  210 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 72/147 (48%), Positives = 103/147 (70%), Gaps = 2/147 (1%)

Query: 60  MRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119
            RPGMYIG  DE  LH +  EV+DN++DE +AG+   I++S+  +  + V DNGRGIPV+
Sbjct: 1   KRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEIKISILPDNIVEVKDNGRGIPVD 60

Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179
            HP     ST+E+++T LHAGGKF+N  Y++SGGLHGVG+SVVNALS+ L V V ++  +
Sbjct: 61  IHP-DKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVNALSEYLEVEVHQKGKV 119

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           ++QK+ RGIP+S ++ +       GT 
Sbjct: 120 YTQKYERGIPVSSVQIQGDSSE-SGTM 145


>gi|27901575|dbj|BAC55908.1| DNA gyrase subunit B [Rhodococcus pyridinivorans]
 gi|308152457|dbj|BAJ22207.1| DNA gyrase subunit B [Rhodococcus rhodochrous]
          Length = 421

 Score =  210 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 133/427 (31%), Positives = 209/427 (48%), Gaps = 37/427 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS  L V +      + Q ++   P      + +   + G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTTLEVEIDNDGYHWEQTYTASKPGEL--VRGEATKQTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY--------- 255
           T + F PDP+IF     F+   + +  Q  A+L+  +    + ++   E+          
Sbjct: 59  TTVRFWPDPEIFETTT-FNFETVARRLQEMAFLNKGLTITLTDERVAPEEVTDEDVPETA 117

Query: 256 ------------------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                                +   +++PGGL+ Y++     +S I + +     +  G 
Sbjct: 118 EAPKTAEDQAVEATEPEVHKVKVRTYHYPGGLEDYVRHINRTKSPIHNSVVGFTAKGTGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRA 354
               +E A+ W       + ++ NTI T EGGTHE G R ALT  + +Y   +     + 
Sbjct: 178 ---ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNRYAKDKKLLKDKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
            ++  DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +
Sbjct: 235 PNLTGDDIREGLAAIISVKVAEPQFEGQTKTKLGNTEVKSFVQKACNEHISHWFEANPAD 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   +  +  R+  RK RE V RK+A     LPGKLADC        E++IVEGDS
Sbjct: 295 AKTIVTKAVSSAHARVAARKARELVRRKSATDIGGLPGKLADCRSKDPSKCEIYIVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +K+  N ++  ++ A G     ++    L
Sbjct: 355 AGGSAKSGRDSMYQAILPLRGKIINVEKARIDKVLKNAEVQSIITAFGTGIHEEFDISKL 414

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 415 RYHKIVL 421


>gi|312434821|gb|ADQ74917.1| gyrase B [Streptomyces parvulus]
          Length = 398

 Score =  210 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 133/399 (33%), Positives = 205/399 (51%), Gaps = 17/399 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS  L V +      ++Q +  G+P +PL + E V +  GT +TF 
Sbjct: 1   SGGLHGVGVSVVNALSSRLSVDIKCDGYRWTQDYKLGVPTAPLAQHEAVED-SGTTVTFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI-----------AEKYGIPE 259
            DP IF     +    L +  Q  A+L+  ++   + ++E             ++    +
Sbjct: 60  ADPDIFETT-EYSFETLSRRFQEMAFLNKGLRINLTDERESAKATAGADEAGEDEKHEVK 118

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              +Y+ GG+  +++     +  +          +      ++E A+ W       + S+
Sbjct: 119 SVSYYYEGGIVDFVKYLNSRKGEVVHPSVIDLEAEDKDRNLSLEVAMQWNGGYTEGVYSF 178

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIRE 376
            N I T EGGTHE G R ALT  I KYA   +   ++  ++  DD+      I+SV + E
Sbjct: 179 ANIIHTHEGGTHEEGFRAALTSLINKYARDKRLLREKDDNLTGDDIREGLTAIISVKLSE 238

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F GQTKTKL + + +  V+  + +    +L +NP EA  ++   I+ +  R+  RK R
Sbjct: 239 PQFEGQTKTKLGNTEVKTFVQRVVYEHLADWLDRNPNEAADIIRKGIQAATARVAARKAR 298

Query: 437 EVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           ++ R+  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGK
Sbjct: 299 DLTRRKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGK 358

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
           ILNV  A  ++I  NQ+I  ++ A G      +  E L 
Sbjct: 359 ILNVEKARIDRILQNQEIQAMISAFGTGVHEDFDIEKLP 397


>gi|82949451|dbj|BAE53386.1| DNA gyrase B [Smaragdicoccus niigatensis]
          Length = 419

 Score =  210 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 133/425 (31%), Positives = 209/425 (49%), Gaps = 35/425 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS ++ V +      ++Q ++   P      + K     G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTKVEVDINHDGYNWTQTYNYAKPTEL--VRGKATRATG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY--------- 255
           T I F  DP IF     +    + +  Q  A+L+  +    +  +   E           
Sbjct: 59  TTIRFWADPNIFETTT-YSFDTVARRLQEMAFLNKGLTIVLTDKRVKEEDVVDEVVSDTA 117

Query: 256 ----------------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
                                  +++PGGL  +++     ++ I + +     +  G   
Sbjct: 118 EAPKGHDEAAADAPVVHKVMTRTYHYPGGLNDFVKHINRTKTPIHTSVVGFSEKGTGH-- 175

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
             +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +   ++  +
Sbjct: 176 -ELEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGN 234

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           +  DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +A 
Sbjct: 235 LSGDDIREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQKACNEHIAHWFEANPADAK 294

Query: 417 KLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            ++   +   + R+  RK RE V RK+A     LPGKLADC  N     EL++VEGDSAG
Sbjct: 295 TIINKALSSMQARVAARKARELVRRKSATDIGGLPGKLADCRSNDPSRCELYVVEGDSAG 354

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           GSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY
Sbjct: 355 GSAKTGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIAKLRY 414

Query: 536 EKVII 540
            K+++
Sbjct: 415 HKIVL 419


>gi|82940538|emb|CAJ44277.1| gyrase B protein [Vibrio kanaloae]
          Length = 392

 Score =  210 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 145/400 (36%), Positives = 220/400 (55%), Gaps = 15/400 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +S G P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT I F P  + F +   F    L K  +  ++L+  V       +E        + + F
Sbjct: 60  GTEIRFWPSEETFTNI-EFHYDILAKRLRELSFLNSGVSIKLIDKRE------EDKMDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ +++    N++ I  +IF   +E+      TVE A+ W +     I  + N I
Sbjct: 113 EYEGGIQAFVEHLNTNKTPIIQKIFHFDSERDD--GITVEVAMQWNDGYQENIYCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GG H +G R ALTR +  + +      K   S   DD       I+SV + +P+F+
Sbjct: 171 PQRDGGAHLAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVN 439
            QTK KLVS + +  VE+ + +    +L++NP EA  +   +I+ +  R   RK      
Sbjct: 231 SQTKDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNI 390


>gi|259018116|gb|ACV89650.1| DNA gyrase subunit B [Nocardia shimofusensis]
          Length = 414

 Score =  210 bits (534), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 134/420 (31%), Positives = 212/420 (50%), Gaps = 33/420 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  + V +      +SQ +    P      + +   + G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSSRVEVEIDVDGYHWSQTYKDSKPGKL--VQGEPTGRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T + F  DP+IF     F+   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTVRFWADPEIFETTT-FNFETVARRLQEMAFLNKGLTITLTDERVSDTDITDEVVSETA 117

Query: 250 ------EIAEKYGIPEKE--EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
                 E AEK    + +   +++PGGL+ +++     +  I + +     +  G     
Sbjct: 118 EAPKPGESAEKPVEHKVKARTYHYPGGLEDFVRHINRTKQSIHNSVVGFTGKGTGH---E 174

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISII 358
           +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++  ++ 
Sbjct: 175 LEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYARDKKLLKEKEGNLT 234

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+      I+SV I EP+F GQTKTKL + + +  V+    +   H+   NP +A  +
Sbjct: 235 GDDIREGLAAIVSVKIAEPQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTI 294

Query: 419 LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           ++  +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGS
Sbjct: 295 VQKAVSSAQARMAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGS 354

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K
Sbjct: 355 AKSGRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYHK 414


>gi|187471785|gb|ACD11203.1| DNA gyrase B subunit [Nocardia sp. W8061]
          Length = 415

 Score =  210 bits (534), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 130/421 (30%), Positives = 215/421 (51%), Gaps = 33/421 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS  +   + R    +SQ++    P   ++   +  ++ G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSRMVTEIDRDGFHWSQEYKDAKPGKLVK--GEPTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC---------DKEIAEKY 255
           T   F  DP +F     ++   + +  Q  A+L+  +    +          D+ ++E  
Sbjct: 59  TTQRFWADPDVFETTT-YNFETISRRLQEMAFLNKGLTITLTDQRVSEAEVTDEVVSETA 117

Query: 256 GIPEKE--------------EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
             P+ +               +++PGGL+ +++     +  I + +    ++  G     
Sbjct: 118 EAPKHDEGTAAAPEPKVKTRTYHYPGGLEDFVKHINRTKQPIHNTVVAFTSKGTGH---E 174

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISII 358
           +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +   ++  ++ 
Sbjct: 175 LEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLT 234

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+      I+SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  +
Sbjct: 235 GDDIREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTI 294

Query: 419 LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           ++  +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGS
Sbjct: 295 VQKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGS 354

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K
Sbjct: 355 AKSGRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDISKLRYHK 414

Query: 538 V 538
           +
Sbjct: 415 I 415


>gi|4514415|dbj|BAA75406.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 389

 Score =  210 bits (534), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 143/401 (35%), Positives = 219/401 (54%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L +T+ R   I  Q++  G P+ PL+    +    G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSSKLELTIHRAGHIHQQEYKHGDPVYPLKVIGDI-ETTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F     F+   L +  +  ++L+  V+     ++   E         F 
Sbjct: 60  TTVRFWPSAETFSQTI-FNVDILARRLRELSFLNAGVRIVLRDERVALE-------HIFD 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           F GGL  +++   + ++ ++         + G     VE A+ W +     +  + N I 
Sbjct: 112 FEGGLSEFVKYINQGKTHLNEIFHFTTQAENGI---GVEVALQWNDTYQENVRCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  +++  DD       I+SV + +P+F+ 
Sbjct: 169 QKDGGTHLAGFRAALTRGLNSYMENENLLKKEKVAVTGDDAREGLTAIVSVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNR 440
           QTK KLVS + +  VE A+   F  YL++NP  A  +   +I+ +  R   RK      R
Sbjct: 229 QTKEKLVSSEVKPAVEQAMNKAFSEYLLENPQAAKSIAGKIIDAARARDAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV 
Sbjct: 289 KSALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY K+II
Sbjct: 349 RARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIII 389


>gi|51571549|emb|CAH18941.1| gyrase B [Corallococcus coralloides]
          Length = 371

 Score =  210 bits (534), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 132/383 (34%), Positives = 204/383 (53%), Gaps = 16/383 (4%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y++SGGLHGVG++ VN LS+   V V R   ++ Q ++RG+     ++     +K GT
Sbjct: 1   GAYKVSGGLHGVGVTCVNFLSEWFKVRVQRAGKVYEQSYARGVANGAPQEAG-TTDKVGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            I F+PD  +      F+   L +  +  A+L+  +      ++   E         F F
Sbjct: 60  TIHFKPDSTVMETV-DFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD-------FKF 111

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG+ ++++   + +  +  +    K+E++G    ++E A+ W +     I ++ N I T
Sbjct: 112 DGGISSFVEYLNKAKEALHDKPVYIKSEREGV---SLEIAMQWNDGYDERIFTFANNINT 168

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQ 382
            EGG+H SG + ALTR +  YAE     + +      +D       ++SV +  P+F GQ
Sbjct: 169 HEGGSHLSGFKAALTRTLNSYAEKGGLWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQ 228

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRK 441
           TKTKL + + +  VE  + D    +L +NP  A K++  + +    R+  RK RE   RK
Sbjct: 229 TKTKLGNSEVKGLVEQMVNDQLASFLEENPPLAKKVVVKIGDACCARIAARKARETVRRK 288

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC     H +EL+IVEGDSAGGSAKQ R+R NQA+LPLRGKILNV  
Sbjct: 289 GVLDGGGLPGKLADCQSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEK 348

Query: 502 AGSEKIRNNQQIMDLVQALGCRT 524
           A  EK+  + +I+ L+ ALG   
Sbjct: 349 ARFEKMLTSAEIVTLITALGTGI 371


>gi|9632631|ref|NP_049621.1| gp39 topoisomerase II, large subunit, N-terminal region
           [Enterobacteria phage T4]
 gi|1351264|sp|P09176|TOPL_BPT4 RecName: Full=DNA topoisomerase large subunit; AltName:
           Full=Protein Gp39
 gi|5354255|gb|AAD42462.1|AF158101_49 gp39 topoisomerase II, large subunit, N-terminal region
           [Enterobacteria phage T4]
 gi|728617|emb|CAA29569.1| DNA topoisomerase large subunit [Enterobacteria phage T4]
          Length = 516

 Score =  210 bits (534), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 109/513 (21%), Positives = 177/513 (34%), Gaps = 64/513 (12%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTD-----------------EKALHHLFSEVIDNAMDE 88
            + I+IL  +E ++ R GMYIG +                     L  L  E+IDN++DE
Sbjct: 3   KNEIKILSDIEHIKKRSGMYIGSSANETHERFMFGKWESVQYVPGLVKLIDEIIDNSVDE 62

Query: 89  VIA---GYANLIEVSLDGNGFLTVVDNGRGIPVENH--PKFPNKSTLEIILTTLHAGGKF 143
            I     +AN I V++  N  +TV DNGRGIP      P            T   AGG F
Sbjct: 63  GIRTKFKFANKINVTI-KNNQVTVEDNGRGIPQAMVKTPTGEEIPGPVAAWTIPKAGGNF 121

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
            +    ++GG++GVG S+ N  S                + S G+     E        +
Sbjct: 122 GDDKERVTGGMNGVGSSLTNIFSVMFVGETGDGQNNIVVRCSNGMENKSWEDIPG--KWK 179

Query: 204 GTRITFRPDPKIFGDKA--GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           GTR+TF PD   F             L   Q+ A +   ++  ++  K            
Sbjct: 180 GTRVTFIPDFMSFETNELSQVYLDITLDRLQTLAVVYPDIQFTFNGKKV----------- 228

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
                G  K Y +   E+  +   E  +               A+    +     +Y N 
Sbjct: 229 ----QGNFKKYARQYDEHAIVQEQENCS--------------IAVGRSPDGFRQLTYVNN 270

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVF-IREPEFA 380
           I T  GG H       +           + K  I +    +      ++ V  ++     
Sbjct: 271 IHTKNGGHHIDCAMDDICE---DLIPQIKRKFKIDVTKARVKECLTIVMFVRDMKNMRLI 327

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
            QTK +L S   +     +        + ++ +    +L  +IE +  R    ++    +
Sbjct: 328 RQTKERLTSPFGEIR---SHIQLDAKKISRDILNNEAILMPIIEAALARKLAAEKAAETK 384

Query: 441 KTAIRKLRLPG-KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
                        +          T LF+ EGDSA G     R++      PLRGK+LN 
Sbjct: 385 AAKKASKAKVHKHIKANLCGKDADTTLFLTEGDSAIGYLIDVRDKELHGGYPLRGKVLNS 444

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
                  +  N+++ D+    G     +  EE 
Sbjct: 445 WGMSYADMLKNKELFDICAITGLVLGEKAFEEK 477


>gi|119226152|dbj|BAF41055.1| DNA gyrase subunit B [Rhodococcus rhodochrous]
 gi|211927089|dbj|BAG82797.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|211927091|dbj|BAG82798.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|211927097|dbj|BAG82801.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|211927099|dbj|BAG82802.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|308152449|dbj|BAJ22203.1| DNA gyrase subunit B [Rhodococcus rhodochrous]
 gi|308152497|dbj|BAJ22227.1| DNA gyrase subunit B [Rhodococcus rhodochrous]
          Length = 421

 Score =  210 bits (534), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 132/427 (30%), Positives = 210/427 (49%), Gaps = 37/427 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS  L V +      + Q ++   P   +    +   + G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTTLEVEIDNDGYHWEQTYTASKPGELIR--GEATKRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY--------- 255
           T + F PDP+IF     F+   + +  Q  A+L+  +    + ++   E+          
Sbjct: 59  TTVRFWPDPEIFETTT-FNFETVARRLQEMAFLNKGLTITLTDERVAPEEVTDEDVPETA 117

Query: 256 ------------------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                                +   +++PGGL+ Y++     ++ I + +     +  G 
Sbjct: 118 EAPKTAEDQAVEAAEPEVHKVKVRTYHYPGGLEDYVRHINRTKTPIHNSVVGFTAKGTGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRA 354
               +E A+ W       + ++ NTI T EGGTHE G R ALT  + +Y   +    ++ 
Sbjct: 178 ---ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNRYAKDKKLLKEKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
            ++  DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +
Sbjct: 235 PNLTGDDIREGLAAIISVKVGEPQFEGQTKTKLGNTEVKSFVQKACNEHISHWFEANPAD 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   +  +  R+  RK RE V RK+A     LPGKLADC        E++IVEGDS
Sbjct: 295 AKTIVTKAVSSAHARVAARKARELVRRKSATDIGGLPGKLADCRSKDPSKCEIYIVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +K+  N ++  ++ A G     ++    L
Sbjct: 355 AGGSAKSGRDSMYQAILPLRGKIINVEKARIDKVLKNAEVQSIITAFGTGIHEEFDISKL 414

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 415 RYHKIVL 421


>gi|95105520|gb|ABF54927.1| DNA gyrase subunit B [Vibrio harveyi]
          Length = 393

 Score =  210 bits (534), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 145/399 (36%), Positives = 223/399 (55%), Gaps = 15/399 (3%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       ++ GT+
Sbjct: 5   SYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQ 63

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F P  + F +   F    L K  +  ++L+  V      ++E        + + F F 
Sbjct: 64  IRFWPSAETFTNI-EFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KSDHFMFE 116

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG++ +++    N++ I  +IF    E++      VE A+ W +     I  + N I   
Sbjct: 117 GGIQAFVEHLNTNKTPIIEKIFHFDFERED--GIAVEVAMQWNDGFQENIYCFTNNIPQR 174

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QT
Sbjct: 175 DGGTHLAGFRAALTRTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQT 234

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKT 442
           K KLVS + +  VE+A+ +    +L++NP EA  +   +I+ +  R   RK R    RK 
Sbjct: 235 KDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKG 294

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 295 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 354

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
             +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 355 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIII 393


>gi|259018184|gb|ACV89684.1| DNA gyrase subunit B [Nocardia beijingensis]
          Length = 414

 Score =  210 bits (534), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 132/420 (31%), Positives = 209/420 (49%), Gaps = 33/420 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L   V      ++Q++    P      + +   + G
Sbjct: 1   SESYAVSGGLHGVGISVVNALSTRLQAEVDTGGYHWTQEYKDAKPGKL--IQGEPTKRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK---------- 254
           T I F PDP+IF     F+   + +  Q  A+L+  +    + ++    +          
Sbjct: 59  TTIRFWPDPEIFETTT-FNFETVARRLQEMAFLNKGLTIVLTDERVSDTEITDEVVSETA 117

Query: 255 -------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
                            +   +++PGGL+ +++     +  I + +     +  G     
Sbjct: 118 EAPKHAEDAAAPAEHKVKSRTYHYPGGLEDFVRHINRTKQPIHNSVVAFTGKGTGH---E 174

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISII 358
           +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +   ++  ++ 
Sbjct: 175 LEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLT 234

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+      I+SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  +
Sbjct: 235 GDDIREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTI 294

Query: 419 LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           +   +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGS
Sbjct: 295 VNKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGS 354

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  R+   QA+LPLRGKI+NV  A  +K+  N ++  ++ A G     ++    LRY K
Sbjct: 355 AKSGRDSMYQAILPLRGKIINVEKARIDKVLKNNEVQSIITAFGTGIHDEFDISKLRYHK 414


>gi|19912131|dbj|BAB88377.1| DNA gyrase subunit B [Cytophaga sp. I-1789]
          Length = 391

 Score =  210 bits (534), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 150/396 (37%), Positives = 223/396 (56%), Gaps = 11/396 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVA-RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           +SGGLHGVG+S VNALS ++ VTV  +   I+ Q + +G P +P+    +  +K GT + 
Sbjct: 1   VSGGLHGVGVSCVNALSKDMKVTVHSKDGKIYEQSYKKGSPQAPVAPVGET-DKTGTTVW 59

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F PD +IF     +   R+    +  A+L+  +       +++ E+   P  E FY  GG
Sbjct: 60  FMPDDEIFT-HHEYVWDRVANRLRELAFLNAGITIILEDLRDVDEQG-NPLSETFYSEGG 117

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEG 327
           +K +++   +++  +  E    + EK       V+ A+++     E   SY N I T EG
Sbjct: 118 IKEFVEYLDDSKEKLIDEAVYIEGEKANIP---VQVAMSYNTSFSENVVSYVNNINTHEG 174

Query: 328 GTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH SG R ALTR +K YA+ +    K  + I  DD       + SV + EP+F GQTKT
Sbjct: 175 GTHVSGFRRALTRTLKNYADKSGLLDKVKVDISGDDFREGLTAVFSVKVAEPQFEGQTKT 234

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-I 444
           KL + DA   V++A+ D  + YL +NP  A ++++ VI  ++ R   RK RE+ ++   +
Sbjct: 235 KLGNSDAVGAVDSAVSDMLNTYLEENPRSAKQIVQKVILAAQARHAARKAREMVQRKNVM 294

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADCS   A  +EL++VEGDSAGGSAKQ R R  QA+LPLRGKILNV  A  
Sbjct: 295 SSTSLPGKLADCSSKDATISELYLVEGDSAGGSAKQGREREYQAILPLRGKILNVEKAQE 354

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            KI +N++I +++ A+G R      E+ L  EK+  
Sbjct: 355 HKIYDNEEIKNMITAMGVRFGKDGDEKALDMEKLRY 390


>gi|82409014|gb|ABB73289.1| gyrase beta subunit [Salinispora arenicola]
 gi|82409016|gb|ABB73290.1| gyrase beta subunit [Salinispora arenicola]
 gi|82409018|gb|ABB73291.1| gyrase beta subunit [Salinispora arenicola]
 gi|82409020|gb|ABB73292.1| gyrase beta subunit [Salinispora arenicola]
 gi|82409032|gb|ABB73298.1| gyrase beta subunit [Salinispora arenicola]
 gi|82409034|gb|ABB73299.1| gyrase beta subunit [Salinispora arenicola]
 gi|82409036|gb|ABB73300.1| gyrase beta subunit [Salinispora arenicola]
 gi|82547020|gb|ABB82298.1| gyrase [Salinispora arenicola]
          Length = 388

 Score =  210 bits (534), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 125/394 (31%), Positives = 204/394 (51%), Gaps = 9/394 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLH VG+SVVNALS  + V + +    + Q ++   P    +   +  +  G+ ++F
Sbjct: 1   VSGGLHRVGVSVVNALSTRMAVEIQKDGYFWRQSYTDSKPSPLEK--GEPTDATGSAVSF 58

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PDP +F     FD   + +  Q  A+L+  +   +  ++  A++ G   +  F + GG+
Sbjct: 59  WPDPAVFETV-DFDFQTIYRRLQEMAFLNRGLTIHFLDERVAADEDGKMREVTFCYKGGI 117

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
             +++    +++ I   +    TE+ G    +VE A+ W E     + ++ N I T EGG
Sbjct: 118 ADFVRHLNASKTPIHKSVVEFGTEEDG---MSVEIAMQWNESYGESVYTFANNINTHEGG 174

Query: 329 THESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           THE G R ALT  I +Y    +  K    +  +D+      I+SV +  P+F GQTKTKL
Sbjct: 175 THEEGFRAALTSVINRYGTDKRLLKSDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKL 234

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRK 446
            +   +  V+    +    +L +NP EA  ++ +           ++ ++   RK+ +  
Sbjct: 235 GNTPVKSFVQRVCNEWLVDWLDRNPAEAKVIITKASQAARARVAAQQARKLARRKSLLES 294

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             +PGKLADC        E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  ++
Sbjct: 295 GSMPGKLADCQSTDPRECEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDR 354

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +  N ++  L+ ALG      +  E LRY K+++
Sbjct: 355 VLKNNEVQALITALGTGIHDDFDIEKLRYHKIVL 388


>gi|20387202|dbj|BAB91301.1| gyrase B [Streptomyces pallidus]
          Length = 409

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 138/411 (33%), Positives = 212/411 (51%), Gaps = 17/411 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS ++ V V      ++Q +  G+P +PL + E      G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSSKVAVEVRTDGHRWTQDYKMGVPTAPLAQHEATEE-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA-----------E 253
           T +TF  DP IF     +    L +  Q  A+L+  +    + ++E A           +
Sbjct: 60  TSVTFWADPDIFETT-EYSFETLSRRFQEMAFLNKGLTIRLTDERESAKATSGADEAGAD 118

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
           +    +   +++ GG+  +++     +             +    + ++E A+ W     
Sbjct: 119 ETAEVKTVTYHYEGGIVDFVKYLNSRKGEAVHPTVIDLEAEDREKQLSLEVAMQWNGGYT 178

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGIL 370
             + S+ N I T EGGTHE G R ALT  I KYA   +   ++  ++  DD+      I+
Sbjct: 179 EGVYSFANIIHTHEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAII 238

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV + EP+F GQTKTKL + +A+  V+  + +    +L +NP EA  ++   I  +  R+
Sbjct: 239 SVKLSEPQFEGQTKTKLGNTEAKTFVQKVVYEHLADWLDRNPNEAADIVRKGIAAATARV 298

Query: 431 RRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK R++ R+  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+
Sbjct: 299 AARKARDLTRRKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPEYQAI 358

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           LP+RGKILNV  A  ++I  NQ+I  ++ A G      +  E LRY K+I+
Sbjct: 359 LPIRGKILNVEKARIDRILQNQEIQAMISAFGTGVHEDFDIERLRYHKIIL 409


>gi|83758694|dbj|BAE54518.1| DNA gyrase subunit B [Rhodococcus sp. TCH4]
          Length = 421

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 132/427 (30%), Positives = 211/427 (49%), Gaps = 37/427 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L V + R    ++Q ++   P   ++       + G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLDVDIKRDGFRWTQTYTDSKPGELVK--GDATKEMG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------ 258
           T + F  DP IF     +    + +  Q  A+L+  +    + ++    +          
Sbjct: 59  TTVRFWADPNIFETTT-YSFETVARRLQEMAFLNKGLTITLTDERVSDAEVTEEVVSQVA 117

Query: 259 ---------------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                                +   +++PGGL+ Y++     +  I + +     +  G 
Sbjct: 118 DAPKTAEDESAAADAPAVHKVKTRVYHYPGGLEDYVRHINRTKQPIHNSVVGFTAKGTGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++ 
Sbjct: 178 ---ELEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRSALTATVNKYALDKKLLKEKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             +  DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +
Sbjct: 235 PKLTGDDIREGLAAIISVKVGEPQFEGQTKTKLGNTEVRSFVQKASNEHLSHWFEANPAD 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   +  ++ R+  RK RE V RK+A     LPGKLADC  N    +E++IVEGDS
Sbjct: 295 AKTIVNKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPSKSEIYIVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    L
Sbjct: 355 AGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDIAKL 414

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 415 RYHKIVL 421


>gi|259018150|gb|ACV89667.1| DNA gyrase subunit B [Nocardia higoensis]
          Length = 414

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 133/420 (31%), Positives = 212/420 (50%), Gaps = 33/420 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  + V +      +SQ +    P      + +  ++ G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSSRVEVEIDVDGYHWSQTYKDSKPGKL--VQGEPTSRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T + F  DP+IF     F+   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTVRFWADPEIFETTT-FNFETVARRLQEMAFLNKGLTITLTDERVSDTDITDDVVSEHA 117

Query: 250 ------EIAEKYGIPEKE--EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
                 E  +K    + +   +++PGGL+ +++     +  I + +     +  G     
Sbjct: 118 EAPKPGEAVDKPVEQKVKARTYHYPGGLEDFVRHINRTKQSIHNSVVGFTGKGTGH---E 174

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISII 358
           +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++  ++ 
Sbjct: 175 LEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYARDKKLLKEKEGNLT 234

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+      I+SV I EP+F GQTKTKL + + +  V+    +   H+   NP +A  +
Sbjct: 235 GDDIREGLAAIVSVKIAEPQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTI 294

Query: 419 LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           ++  +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGS
Sbjct: 295 VQKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGS 354

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  R+   QA+LPLRGKI+NV  A  +K+  N ++  ++ A G     ++    LRY K
Sbjct: 355 AKSGRDSMYQAILPLRGKIINVEKARIDKVLKNNEVQSIITAFGTGIHDEFDISKLRYHK 414


>gi|12644446|sp|Q44274|GYRB_ACIGB RecName: Full=DNA gyrase subunit B
 gi|11270914|pir||T43903 DNA gyrase chain B [imported] - Acinetobacter sp. (fragment)
 gi|4514417|dbj|BAA75407.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 389

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 143/401 (35%), Positives = 219/401 (54%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L +T+ R   I  Q++  G P+ PL+    V    G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSSKLELTIHRAGHIHQQEYKHGDPVYPLKIVGDV-ETTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F     F+   L +  +  ++L+  V+     ++   E         F 
Sbjct: 60  TIVRFWPSTETFSQTI-FNVDILARRLRELSFLNAGVRIVLRDERVALE-------HVFD 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   + ++ ++         + G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLSEFVKYINQGKTHLNEIFHFTTQAENGI---GVEVALQWNDTYQENVRCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  +++  DD       I+SV + +P+F+ 
Sbjct: 169 QKDGGTHLAGFRAALTRGLNSYMENENLLKKEKVAVTGDDAREGLTAIVSVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNR 440
           QTK KLVS + +  VE A+   F  YL++NP  A  +   +I+ +  R   RK      R
Sbjct: 229 QTKEKLVSSEVKPAVEQAMNKAFSEYLLENPQAAKSIAGKIIDAARARDAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV 
Sbjct: 289 KSALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY K+II
Sbjct: 349 RARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIII 389


>gi|194477396|gb|ACF74794.1| DNA gyrase subunit B [Halorubrum tibetense]
          Length = 388

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 141/399 (35%), Positives = 209/399 (52%), Gaps = 18/399 (4%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSP---LEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           ALS+ L V + R   +F  +F RG P        +  +     GT I F PD ++F    
Sbjct: 1   ALSERLEVELKRDGGVFRHRFERGEPAPDGFERVRDMESGESTGTHIRFWPDDEVFETT- 59

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F+ + L    +  A+L+  V+   + D+         E E F + GG++ ++    E R
Sbjct: 60  DFEFSTLSNRLRELAFLNSGVEITLADDRS-------DEAETFRYDGGIREFVGYLNETR 112

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHESGLRVALT 339
           + I  E+   + E  G H   VE A+   EE    + ++ N I T EGGTH +G + ALT
Sbjct: 113 TPIHEEVIYFEGEDDGVH---VEVAMQATEELQGSVHAFANNINTREGGTHLTGFKTALT 169

Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  YA           ++  +D+      ++SV   +P+F GQTKTKL + + +  VE
Sbjct: 170 RVVNDYANEHGLIDDLDANLKGEDVREGLTAVISVKHPDPQFEGQTKTKLGNSEVRGVVE 229

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
           +A  +    +  +NP  A K++    E +  R   +K  E   RK+A+    LPGKLADC
Sbjct: 230 SATHERLGTFFEENPDTARKVVHKAAEAARARKAAKKAEELTRRKSALESTALPGKLADC 289

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
                   ELF+VEGDSAGGSAKQ RNR NQA+LPL+GKILNV     ++I  N +I  L
Sbjct: 290 QTRDPTEAELFVVEGDSAGGSAKQGRNRENQAILPLKGKILNVEKHRLDRILENDEIRAL 349

Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLL 555
           + A+G     ++  +D+RY K+I++ DADVDGAHI + L
Sbjct: 350 ITAIGAGIGEEFDIDDVRYNKIILLVDADVDGAHIRTPL 388


>gi|259018188|gb|ACV89686.1| DNA gyrase subunit B [Nocardia araoensis]
          Length = 414

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 132/420 (31%), Positives = 209/420 (49%), Gaps = 33/420 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L   V      ++Q++    P      + +   + G
Sbjct: 1   SESYAVSGGLHGVGISVVNALSTRLQAEVDTGGYHWTQEYKDAKPGKL--IQGEPTKRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK---------- 254
           T I F PDP+IF     F+   + +  Q  A+L+  +    + ++    +          
Sbjct: 59  TTIRFWPDPEIFETTT-FNFETVARRLQEMAFLNKGLTIVLTDERVSDTEITDEVVSETA 117

Query: 255 -------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
                            +   +++PGGL+ +++     +  I + +     +  G     
Sbjct: 118 EGPKHAEEGAAPAEHKVKSRTYHYPGGLEDFVRHINRTKQPIHNSVVAFTGKGTGH---E 174

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISII 358
           +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +   ++  ++ 
Sbjct: 175 LEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLT 234

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+      I+SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  +
Sbjct: 235 GDDIREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTI 294

Query: 419 LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           +   +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGS
Sbjct: 295 VNKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGS 354

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  R+   QA+LPLRGKI+NV  A  +K+  N ++  ++ A G     ++    LRY K
Sbjct: 355 AKSGRDSMYQAILPLRGKIINVEKARIDKVLKNNEVQSIITAFGTGIHDEFDISKLRYHK 414


>gi|27530801|dbj|BAC54048.1| DNA gyrase subunit B [Gordonia amarae]
 gi|27530825|dbj|BAC54060.1| DNA gyrase subunit B [Nocardia carnea]
          Length = 418

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 135/424 (31%), Positives = 211/424 (49%), Gaps = 34/424 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L   V      +SQ +   +P      + +     G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSSRLEAEVDTDGYHWSQTYKDAVPGPL--VQGEPTKATG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T I F  DP IF     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTIRFWADPAIFETTT-YNFETISRRLQEMAFLNKGLTIVLTDERVSATEVTDEMVSETA 117

Query: 250 ---EIAEKYGIPEKEE------FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
              +  E    P  E       +++PGGL+ +++     +  I +   +   +  G    
Sbjct: 118 EAPKHDEGGEKPAVEHKVKARTYHYPGGLEDFVRHINRTKQPIHNSAVSFNGKGPGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SI 357
            +E A+ W       + ++ NTI T EGGTHE G R ALT  + +YA+  +  +    ++
Sbjct: 175 ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNRYAKEKKLLKDKDGNL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  
Sbjct: 235 TGDDIREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRACNEHLAHWFEANPADAKT 294

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   +  ++ RL  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGG
Sbjct: 295 IVNKAVSSAQARLAARKARELVRRKSATDIGGLPGKLADCRSKDPSKSEIYIVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +K+  N ++  ++ A G     ++    LRY 
Sbjct: 355 SAKSGRDSMYQAILPLRGKIINVEKARIDKVLKNAEVQAIITAFGTGIHDEFDIAKLRYH 414

Query: 537 KVII 540
           K+++
Sbjct: 415 KIVL 418


>gi|2196796|gb|AAB80815.1| DNA gyrase beta-subunit [Shewanella putrefaciens]
          Length = 419

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 135/416 (32%), Positives = 220/416 (52%), Gaps = 16/416 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T L    K + ++Y++SGGLHGVG+SVVNALS +L +T+ R   ++ Q ++ G+P 
Sbjct: 1   EVIMTVLMRFKKSEANSYKVSGGLHGVGVSVVNALSKKLQMTIRRAGKVYEQFYTHGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+++        GT I   P          F    L K  +  ++L+  V      +++
Sbjct: 61  APIKEIGDATK-TGTEIRPWPSEDT-SSDVEFHFEILAKRVRELSFLNSGVGIRLVDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + E F + GG+  ++     N++ ++ ++     E++     TVE A+ W +
Sbjct: 119 N-------KNEFFKYEGGISAFVDYLNRNKTPVNKDVSHFMQERED--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                I  + N I   +GGTH  G R ALTR +  Y E      K   S   DD      
Sbjct: 170 GYQENIFCFTNNIPQRDGGTHLVGFRSALTRNLNSYMENEGYNKKGKTSATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RS 426
            ++SV + +P+F+ QTK KLVS + +  VE  + +  + Y+++NP +   ++  +++   
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEKLNDYVLENPADVKLIVGKIVDAAR 289

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
                R+ +    RK A+    LPGKLAD  +     +E++IVEGD A GSAKQ RNR N
Sbjct: 290 AREAARKAREMTRRKGALDLGGLPGKLADYQEKDPGLSEIYIVEGDYASGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIM 541
           QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  +  RY+KV + 
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKTRYQKVFMA 405


>gi|19912123|dbj|BAB88373.1| DNA gyrase subunit B [Cytophaga sp. T-326]
          Length = 391

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 150/396 (37%), Positives = 224/396 (56%), Gaps = 11/396 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVA-RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           +SGGLHGVG+S VNALS ++ VTV  +   I+ Q + +G P +P+    +  +K GT + 
Sbjct: 1   VSGGLHGVGVSCVNALSKDMKVTVHSKDGKIYEQSYKKGSPQAPVAPVGET-DKTGTTVW 59

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F PD +IF     +   R+    +  A+L+  +       +++ E+   P  E FY  GG
Sbjct: 60  FMPDDEIFT-HHEYVWDRVANRLRELAFLNAGITIVLEDLRDVDEQG-NPLSETFYSEGG 117

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEG 327
           +K +++   +++  +  E    + EK       V+ A+++     E   SY N I T EG
Sbjct: 118 IKEFVEYLDDSKEKLIDEAVYIEGEKANIP---VQVAMSYNTSFSENVVSYVNNINTHEG 174

Query: 328 GTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH SG R ALTR +K YA+ +    K  + I  DD       ++SV + EP+F GQTKT
Sbjct: 175 GTHVSGFRRALTRTLKNYADKSGLLDKVKVDISGDDFREGLTAVISVKVAEPQFEGQTKT 234

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-I 444
           KL + DA   V++A+ D  + YL +NP  A ++++ VI  ++ R   RK RE+ ++   +
Sbjct: 235 KLGNSDAVGAVDSAVSDMLNTYLEENPRSAKQIVQKVILAAQARHAARKAREMVQRKNVM 294

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADCS   A  +EL++VEGDSAGGSAKQ R R  QA+LPLRGKILNV  A  
Sbjct: 295 SSTSLPGKLADCSSKDATISELYLVEGDSAGGSAKQGREREYQAILPLRGKILNVEKAQE 354

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            KI +N++I +++ A+G R      E+ L  EK+  
Sbjct: 355 HKIYDNEEIKNMITAMGVRFGKDGDEKALDMEKLRY 390


>gi|19912127|dbj|BAB88375.1| DNA gyrase subunit B [Cytophaga sp. I-976]
 gi|19912129|dbj|BAB88376.1| DNA gyrase subunit B [Cytophaga sp. I-1787]
          Length = 391

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 150/396 (37%), Positives = 224/396 (56%), Gaps = 11/396 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVA-RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           +SGGLHGVG+S VNALS ++ VTV  +   I+ Q + +G P +P+    +  +K GT + 
Sbjct: 1   VSGGLHGVGVSCVNALSKDMKVTVHSKDGKIYEQSYKKGSPQAPVAPVGET-DKTGTTVW 59

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F PD +IF     +   R+    +  A+L+  +       +++ E+   P  E FY  GG
Sbjct: 60  FMPDDEIFT-HHEYVWDRVANRLRELAFLNAGITIILEDLRDVDEQG-NPLSETFYSEGG 117

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEG 327
           +K +++   +++  +  E    + EK       V+ A+++     E   SY N I T EG
Sbjct: 118 IKEFVEYLDDSKEKLIDEAVYIEGEKANIP---VQVAMSYNTSFSENVVSYVNNINTHEG 174

Query: 328 GTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH SG R ALTR +K YA+ +    K  + I  DD       ++SV + EP+F GQTKT
Sbjct: 175 GTHVSGFRRALTRTLKNYADKSGLLDKVKVDISGDDFREGLTAVISVKVAEPQFEGQTKT 234

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-I 444
           KL + DA   V++A+ D  + YL +NP  A ++++ VI  ++ R   RK RE+ ++   +
Sbjct: 235 KLGNSDAVGAVDSAVSDMLNTYLEENPRSAKQIVQKVILAAQARHAARKAREMVQRKNVM 294

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADCS   A  +EL++VEGDSAGGSAKQ R R  QA+LPLRGKILNV  A  
Sbjct: 295 SSTSLPGKLADCSSKDATISELYLVEGDSAGGSAKQGREREYQAILPLRGKILNVEKAQE 354

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            KI +N++I +++ A+G R      E+ L  EK+  
Sbjct: 355 HKIYDNEEIKNMITAMGVRFGKDGDEKALDMEKLRY 390


>gi|27530821|dbj|BAC54058.1| DNA gyrase subunit B [Nocardia brevicatena]
          Length = 418

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 132/424 (31%), Positives = 212/424 (50%), Gaps = 34/424 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L   +      +SQ +    P      + +   + G
Sbjct: 1   SESYAVSGGLHGVGISVVNALSTRLEAEIKHDGYHWSQTYKDAAPGKL--VQGEPTRETG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T I F PDP++F     F+   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTIRFWPDPEVFETTT-FNFETVARRLQEMAFLNKGLTIVLTDERVSEAEITDDVVSETA 117

Query: 250 ---------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                    E        +   +++PGGL+ +++     ++ I + +     +  G    
Sbjct: 118 EVPKHAENGEQQPAEPKVKTRTYHYPGGLEEFVRHINRTKTPIHNSVVGFTGKGTGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SI 357
            +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++
Sbjct: 175 ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLLKEKDGNL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  
Sbjct: 235 TGDDIREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKT 294

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           +++  +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGG
Sbjct: 295 IVQKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +K+  N ++  ++ A G     ++    LRY 
Sbjct: 355 SAKSGRDSMYQAILPLRGKIINVEKARIDKVLKNNEVQAIITAFGTGIHDEFDIGKLRYH 414

Query: 537 KVII 540
           K+++
Sbjct: 415 KIVL 418


>gi|317420206|emb|CBW30260.1| gyrase B subunit [Pseudoalteromonas translucida]
          Length = 389

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 140/398 (35%), Positives = 221/398 (55%), Gaps = 16/398 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS++L +T+ R+  +  Q ++ G+P +PL       +  GT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKLKLTIRREGKLHEQTYTHGVPDAPLAVIGDA-DTTGTE 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F P  + F +   F    L K  +  ++L+  V    + ++E        + + F + 
Sbjct: 60  LRFWPSDQTFTNL-DFHYDILAKRLRELSFLNSGVSIILNDERE------ENKSDHFKYE 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG++ +++    N++ I   +F     ++      VE ++ W +     I  + N I   
Sbjct: 113 GGIRAFVEYLNRNKTPIHKGVFHFTHTRE-EDGIVVEVSMQWNDAYQENIYCFTNNIPQR 171

Query: 326 EGGTHESGLRVALTRGIKKYA----ELTQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
           +GGTH +G R ALTR +  Y        + K   +   DD       ++SV + +P+F+ 
Sbjct: 172 DGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKFSS 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE A+ + F  +L+++P +A  ++  +I+ S  R   RK R    R
Sbjct: 232 QTKDKLVSSEVKSAVEQAMAEKFTEFLLEHPTDAKIVVGKIIDASRAREAARKAREMTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 292 KGAMDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537
            A  +K+ ++Q++  L+ ALGC   R +Y  E LRY +
Sbjct: 352 KARFDKMLSSQEVATLITALGCGIGRDEYNPEKLRYHR 389


>gi|27530811|dbj|BAC54053.1| DNA gyrase subunit B [Rhodococcus sp. MBIC01430]
 gi|27530815|dbj|BAC54055.1| DNA gyrase subunit B [Rhodococcus sp. MBIC01431]
 gi|27530817|dbj|BAC54056.1| DNA gyrase subunit B [Rhodococcus sp. MBIC01452]
          Length = 423

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 137/427 (32%), Positives = 213/427 (49%), Gaps = 35/427 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS ++ + +AR    ++Q +    P  PLE   + +   G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTKVELQIARDGHRYTQTYDYAKP-GPLETVGETKE-TG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE----- 259
           T + F PD KIF     F    + +  Q  A+L+  +   +  ++  +      E     
Sbjct: 59  TTVRFWPDGKIFETL-DFSFETVHRRLQEMAFLNKGLTINYIDERVASTDASEEELGETA 117

Query: 260 ----------------------KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                                 K  +++P GL  +++     +S             KG 
Sbjct: 118 LAPKSAEEEQAEVASVKPAKARKRTYHYPDGLVDFVKHINAKKSQTPIHSSVVGFTAKGE 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++ 
Sbjct: 178 GH-EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRTALTSTVNKYALEKKLVKEKD 236

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           I +  DD+      ++SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +
Sbjct: 237 IKLTGDDIREGLAAVISVRVGEPQFEGQTKTKLGNTEIRSFVQKACNEHLGHWFESNPAD 296

Query: 415 ATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   +  ++ R+  RK RE+  RK+A     LPGKLADC  N    +E++IVEGDS
Sbjct: 297 AKTIINKAVSSAQARMAARKAREMVRRKSATDIGGLPGKLADCRSNDPSKSEIYIVEGDS 356

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    L
Sbjct: 357 AGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNNEVQAIITAFGTGIHDEFDITKL 416

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 417 RYHKIVL 423


>gi|308152443|dbj|BAJ22200.1| DNA gyrase subunit B [Rhodococcus rhodochrous]
          Length = 421

 Score =  210 bits (534), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 133/427 (31%), Positives = 209/427 (48%), Gaps = 37/427 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS  L V +      + Q ++   P      + +   + G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTTLEVEIDNDGYHWEQTYTASKPGEL--VRGEATKQTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY--------- 255
           T + F PDP+IF     F+   + +  Q  A+L+  +    + ++   E+          
Sbjct: 59  TTVRFWPDPEIFETTT-FNFETVARRLQEMAFLNKGLTITLTDERVAPEEVTDEDVPETA 117

Query: 256 ------------------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                                +   +++PGGL+ Y++     +S I + +     +  G 
Sbjct: 118 EAPKTAEDQAVEATEPEMHKVKVRTYHYPGGLEDYVRHINRTKSPIHNSVVGFTAKGTGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRA 354
               +E A+ W       + ++ NTI T EGGTHE G R ALT  + +Y   +     + 
Sbjct: 178 ---ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNRYAKDKKLLKDKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
            ++  DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +
Sbjct: 235 PNLTGDDIREGLAAIISVKVAEPQFEGQTKTKLGNTEVKSFVQKACNEHISHWFEANPAD 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   +  +  R+  RK RE V RK+A     LPGKLADC        E++IVEGDS
Sbjct: 295 AKTIVTKAVSSAHARVAARKARELVRRKSATDIGGLPGKLADCRSKDPSKCEIYIVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +K+  N ++  ++ A G     ++    L
Sbjct: 355 AGGSAKSGRDSMYQAILPLRGKIINVEKARIDKVLKNAEVQSIITAFGTGIHEEFDISKL 414

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 415 RYHKIVL 421


>gi|281484872|gb|ADA70305.1| DNA gyrase subunit B [Photobacterium damselae]
          Length = 383

 Score =  210 bits (533), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 139/390 (35%), Positives = 216/390 (55%), Gaps = 14/390 (3%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS+++ +T+ R   I  Q +  G+P +PLE      ++ GT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKVELTIYRHGHIHRQIYRHGVPQAPLEVIGDT-DRTGTT 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F P  + F +   F    L K  +  ++L+  V    + ++E        +++ F + 
Sbjct: 60  IRFWPSSETFTNTT-FQYEILAKRLRELSFLNSGVSIKLNDERE------EGKQDHFMYE 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG++ +++    N++ I  ++F    E++     TVE A+ W +     I  + N I   
Sbjct: 113 GGIQAFVEHLNRNKTPIHQKVFHFNVERED--GITVEVAMQWNDGFQENIYCFTNNIPQR 170

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R ALTR +  Y E      K   +   DD       ++SV + +P+F+ QT
Sbjct: 171 DGGTHLAGFRGALTRTLNNYMEKEGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQT 230

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKT 442
           K KLVS + +  VE+ + +    +L++NP +A  +   +I+ S  R   RK R    RK 
Sbjct: 231 KDKLVSSEVKSAVESTMGEKLGEFLLENPGDAKTVCTKIIDASRAREAARKAREMTRRKG 290

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 291 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 350

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREED 532
             +K+ ++Q++  L+ A+GC         D
Sbjct: 351 RFDKMLSSQEVATLITAMGCGIGRDEYNPD 380


>gi|83017277|dbj|BAE53557.1| DNA gyrase B [Microbulbifer sp. MBIC06448]
 gi|83017279|dbj|BAE53558.1| DNA gyrase B [Microbulbifer sp. MBIC06406]
          Length = 389

 Score =  210 bits (533), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 146/401 (36%), Positives = 225/401 (56%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           ++TY++SGGLHGVG+SVVNALS+EL +T+ R   I+ Q + +G+P +PL    +  +  G
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSEELKLTIRRAGRIYEQTYHQGVPQAPLGVVGE-SDSTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F+P    F +   F    L K  +  ++L+  V+     ++   E       E + 
Sbjct: 60  TTVHFKPSANTFSNI-EFHFDVLAKRLRELSFLNSGVRIVLKDERSGKE-------EVYE 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  ++    +N++ I+  +      + G     VE A+ W +     I  Y N I 
Sbjct: 112 YEGGLSAFVAFLNQNKTPINKVLHFHSQREDGI---AVEVALQWNDSFQESIFCYTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLAGFRAALTRGLNSYIEREGLGKKDKVNTTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  +   F+ YL++NP EA  ++  +I+ ++ R   RK R    R
Sbjct: 229 QTKDKLVSSEVKPAVEQEMGQHFNDYLLENPQEAKSVVTKMIDAAKAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC Q     +E+++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQQKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++ ++  L+ ALGC   +S++  + LRY  +II
Sbjct: 349 KARFDKMLSSAEVGTLITALGCGIGKSEFNPDKLRYHSIII 389


>gi|330896987|gb|AEC48375.1| gyrase B [Streptomyces phaeofaciens]
          Length = 398

 Score =  210 bits (533), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 132/397 (33%), Positives = 207/397 (52%), Gaps = 17/397 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
            Y +SGGLHGVG+SVVNALS ++ V V      ++Q +  G+P +PL + E   ++ GT 
Sbjct: 1   GYAVSGGLHGVGVSVVNALSTKVAVEVRTDGHRWTQDYKLGVPTAPLAQHEAT-DEHGTS 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI-----------AEKY 255
           +TF  DP IF     +    L +  Q  A+L+  ++   + ++E             ++ 
Sbjct: 60  VTFWADPDIFETT-DYSFETLSRRFQEMAFLNKGLRINLTDERESAKATAGADEAGEDEK 118

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PE 314
              ++  +++ GG+  +++     +  +          +      ++E A+ W       
Sbjct: 119 HEVKRVSYHYEGGIVDFVKYLNSRKGDLVHATVIDLEAEDKDKLLSLEVAMQWNSGYTEG 178

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSV 372
           + S+ N I T EGGTHE G R ALT  I KYA   +   ++  ++  DD+      I+SV
Sbjct: 179 VYSFANIIHTHEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISV 238

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
            + EP+F GQTKTKL + + +  V+  + +    +L +NP EA  ++   I+ +  R+  
Sbjct: 239 KLSEPQFEGQTKTKLGNTEVKTFVQKVVYEHLADWLDRNPNEAADIIRKGIQAATARVAA 298

Query: 433 RKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           RK R++ R+  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP
Sbjct: 299 RKARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILP 358

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528
           +RGKILNV  A  +KI  NQ+I  L+ A G      +
Sbjct: 359 IRGKILNVEKARIDKILQNQEIQALISAFGTGVHEDF 395


>gi|296051271|gb|ADG86632.1| DNA gyrase subunit B [Gordonia polyisoprenivorans]
          Length = 421

 Score =  210 bits (533), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 138/426 (32%), Positives = 211/426 (49%), Gaps = 38/426 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS ++ V +      +S+ F+   P   ++   +   K G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTKVEVEIDVDGFHWSETFTDSKPDGLVK--GEPTRKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC----------------- 247
           T + F PD  IF +   F+A  + +  Q  A+L+  +    +                  
Sbjct: 59  TTVRFWPDASIFTETTSFNAETVARRLQEMAFLNKGLTITLTDRRPKAVEAPGDPNGEGE 118

Query: 248 ------------DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
                       DKE A     P+   +++P GL  Y++     ++ I   +     +  
Sbjct: 119 EGTTETAEEIKSDKEKAAAATKPKTRTYHYPDGLIDYIKHLNRTKNPIHKSVIGFTGKGT 178

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W       + ++ NTI T EGGTHE G R ALTR +  YA   +   +
Sbjct: 179 GH---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTRVVNSYAREKKLLKE 235

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
           +  ++  DD+      ++SV + +P+F GQTKTKL + + +  V  A  +  +H+   NP
Sbjct: 236 KDDNLTGDDIREGLAAVISVKVSDPQFEGQTKTKLGNTEVKSFVLKASGEHIEHWFEANP 295

Query: 413 IEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
            EA  ++   +E +  R   RK RE V RK+A     LPGKLADC  N     E+++VEG
Sbjct: 296 AEAKIIINKAVESAHARQAARKARELVRRKSATDIGGLPGKLADCRSNDPSKCEIYLVEG 355

Query: 472 DSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE 531
           DSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++   
Sbjct: 356 DSAGGSAKTGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDLA 415

Query: 532 DLRYEK 537
            LRY K
Sbjct: 416 KLRYHK 421


>gi|83017293|dbj|BAE53564.1| DNA gyrase B [Microbulbifer sp. MBIC08251]
          Length = 389

 Score =  210 bits (533), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 144/401 (35%), Positives = 219/401 (54%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           ++TY++SGGLHGVG+SVVNALS EL +T+ R   I  Q +  G+P +PL    +  +  G
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSAELKLTIRRDGRIHEQTYRDGVPQAPLAVVGET-DTTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F+P P+ F +   F    L K  +  ++L+  V+     ++   E       E + 
Sbjct: 60  TMVHFKPSPETFSNI-EFHFDVLAKRLRELSFLNSGVRILLKDERSGKE-------EIYE 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL+ +++     ++ I+  +        G     VE A+ W +     I  Y N I 
Sbjct: 112 YGGGLRAFVEFLNHAKTPINKVLHFQSQRDDGI---GVEVALQWNDSFQENIYCYTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLAGFRTALTRGLNNYIEKEGLGKKDKVNTTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  +   F  YL++NP EA  ++  +I+ ++ R   RK R    R
Sbjct: 229 QTKDKLVSSEVKSAVEQEMGQHFSDYLLENPQEAKSVVTKMIDAAKAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC Q     +E+++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQQKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVII 540
            A  +K+ ++ ++  L+ ALGC       + + +RY  +II
Sbjct: 349 KARFDKMLSSAEVGTLITALGCGIGKSEFDADKIRYHSIII 389


>gi|86169583|gb|ABC87031.1| DNA gyrase subunit B [Weissella viridescens]
          Length = 394

 Score =  210 bits (533), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 140/402 (34%), Positives = 214/402 (53%), Gaps = 14/402 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK--KEKVRNK 202
              Y++SGGLHGVG SVVNALS EL V V R +  +   F RG     + +   E +   
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTELDVIVVRDDKAYDMDFERGHVKDSIHEVSPEGLAVS 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
           RGT + F PDP IF +   FD   L    +  A+L+  ++   + ++        P  E 
Sbjct: 61  RGTIVHFTPDPDIFQETTEFDIKTLTNRVRELAFLNKGLRISITDNR-----PAEPVTES 115

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           F++ GG+K Y++    N+ ++  +    +  + G     VE ++ + ++    + S+ N 
Sbjct: 116 FHYEGGIKEYVEYLDVNKDVLFEDPVYVEGTENGI---AVEVSLQYTDDFHSNMMSFANK 172

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEF 379
           I T EGGTHE+G + ALTR I  YA      +    S+  +D+      I+SV   +P+F
Sbjct: 173 IHTYEGGTHETGFKSALTRVINDYARKNSILKDGDESLSGEDVREGLTAIVSVKHPDPQF 232

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREV 438
            GQTKTKL + DA+  V+    + F  ++++NP  A +++E  ++     +  +R +   
Sbjct: 233 EGQTKTKLGNSDARTAVDRMFSETFSRFMLENPATAREIVEKGMLANKARKAAKRAREAT 292

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            +K+ +    LPGKLAD +       ELFIVEGDSAGGSAKQ R R  QA+LP+RGKILN
Sbjct: 293 RKKSGLEISNLPGKLADNTSKDPEIFELFIVEGDSAGGSAKQGRERLTQAILPIRGKILN 352

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           V  A  +KI  N++I  L  A+G     ++     +Y K+II
Sbjct: 353 VEKASIDKILGNEEIRSLFTAMGTGFGDEFDVTKAKYHKLII 394


>gi|83017275|dbj|BAE53556.1| DNA gyrase B [Microbulbifer sp. MBIC06115]
          Length = 389

 Score =  210 bits (533), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 146/401 (36%), Positives = 223/401 (55%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           ++TY++SGGLHGVG+SVVNALS EL +T+ R   I+ Q +  G+P +PL       +  G
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSRELKLTIRRGGKIYEQIYHHGVPQAPLGVVGD-SDTSG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F+P    F +   F    L K  +  ++L+  V+     ++   E       E + 
Sbjct: 60  TTVHFKPSADTFNNI-EFHFDVLAKRLRELSFLNSGVRIVLKDERSGKE-------EVYE 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   +N++ I+  +      + GT    VE A+ W +     I  Y N I 
Sbjct: 112 YEGGLSAFVEFLNQNKTPINKVLHFHSQREDGT---AVEVALQWNDSFQESIFCYTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLAGFRAALTRGLNSYIEREGLGKKDKVNTTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  +   F  YL+++P EA  ++  +I+ ++ R   RK R    R
Sbjct: 229 QTKDKLVSSEVKTAVEQEMGQHFADYLMEHPQEAKAVVIKMIDAAKAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC Q     +E+++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQQKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++ ++  L+ ALGC   +S++  + LRY  +II
Sbjct: 349 KARFDKMLSSVEVGTLITALGCGIGKSEFNPDKLRYHSIII 389


>gi|306517917|emb|CBL53382.1| gyrase B subuni [Photobacterium rosenbergii]
          Length = 385

 Score =  210 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 139/395 (35%), Positives = 220/395 (55%), Gaps = 15/395 (3%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS+++ +T+ R  +I  Q +  G P +PL    +     GT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSEKVELTINRGGSIHQQVYHHGEPQAPLGIIGETEK-TGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           RI F P  + F +   F    L K  +  ++L+  V      ++E        +++ F +
Sbjct: 60  RIRFWPSAETFSNI-EFQYEILAKRLRELSFLNSGVSIKLIDERE------EDKQDHFMY 112

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG++ +++    N++ I  ++F  +  ++      VE A+ W +     I  + N I  
Sbjct: 113 EGGIRAFVEHLNRNKTPIHPKVFHFEFTRED--GIGVEVAMQWNDGFQENIYCFTNNIPQ 170

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ Q
Sbjct: 171 RDGGTHLAGFRGALTRTLNNFMDKEGYLKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRK 441
           TK KLVS + +  VE+ + +    +L++NP +A  +   +I+ S  R   RK R    RK
Sbjct: 231 TKDKLVSSEVKPAVESTMGEKLSEFLLENPADAKTVCTKIIDASRAREAARKAREMTRRK 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  
Sbjct: 291 GALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRY 535
           A  +K+ ++Q++  L+ A+GC   R +Y  + LRY
Sbjct: 351 ARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRY 385


>gi|209863962|gb|ACI88899.1| GyrB [Acidiphilium acidophilum]
          Length = 398

 Score =  210 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 136/405 (33%), Positives = 213/405 (52%), Gaps = 15/405 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D ++Y++SGGLHGVG +VVNALS+ + V + R       +F  G  ++PL       +  
Sbjct: 1   DQNSYKVSGGLHGVGAAVVNALSEWMEVRIWRDGKEHLIRFENGDTVAPLAVVGASEHGT 60

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TFRP    F     FD A   +  +  A+L+  +      ++  A      ++  F
Sbjct: 61  GTSVTFRPSAATFTR-TEFDFAIYERRLRELAFLNSGLTINLRDERHSAV-----QEAHF 114

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GGL  ++      ++ + S   T   +        VE+A+AW +     +  + N I
Sbjct: 115 RYEGGLVEFVSWLDRAKTQLFSPPVTA-FKDDAPGGIKVEFALAWNDTYHETMLCFTNNI 173

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
           +  +GGTH +G R ALTR + KYAE    K ++S+  +D+      +LSV + +P+F+ Q
Sbjct: 174 VQRDGGTHLAGFRSALTRVVSKYAESLGKKDSLSLSCEDMREGLTAVLSVKVPDPKFSSQ 233

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK KLVS + Q  V+ A+ D  +H+   +P E   + + V++ +  R   RK RE+ R+ 
Sbjct: 234 TKDKLVSSEVQPLVQAAVADALEHWFETHPKEGRLIAQKVMDAASAREAARKARELTRRK 293

Query: 443 A-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC +     +E+FIVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  
Sbjct: 294 GVLDISTLPGKLADCQERDPAKSEIFIVEGDSAGGSAKQGRDRKTQAILPLKGKILNVER 353

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQ------YREEDLRYEKVII 540
           A  +++  + +I  L+ ALG            +    LRY ++  
Sbjct: 354 ARFDRMLGSAEIGTLITALGTGIGPAEPEQGGFDISKLRYHRISS 398


>gi|6729178|dbj|BAA89722.1| DNA gyrase subunit B [Couchioplanes caeruleus]
          Length = 396

 Score =  210 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 127/400 (31%), Positives = 202/400 (50%), Gaps = 8/400 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  + V + +   ++ QK++   P    +   +  +  G
Sbjct: 1   GKAYAVSGGLHGVGVSVVNALSTRMAVEIHKSGNVYRQKYTASKPGPLEK--GEPTDTTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEF 263
           + + F PDP IF     FD   + +  Q  A+L+  +      ++ E  ++ G P +  F
Sbjct: 59  STVQFWPDPTIFETV-EFDFQTIYRRIQEMAFLNKGLTINLVDERPESLDEQGEPRRVTF 117

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            +  G+  +++     +S I   +     E        +E A+ W E     + ++ NTI
Sbjct: 118 MYEHGIADFVRHLNHTKSPIHKSVIEFDAEA-PEDGMALEIAMQWNESYGESVYTFANTI 176

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAG 381
            T EGGTHE G R ALT  + +Y    +  K    +  +D+      I+SV +  P+F G
Sbjct: 177 NTHEGGTHEEGFRAALTNTVNRYGAEKKLLKSDEKLSGEDIREGLAAIISVKLANPQFEG 236

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNR 440
           QTKTKL + D +  V+    +    +  +NP EA  ++ +           ++ ++   R
Sbjct: 237 QTKTKLGNTDMKSFVQKIANERIADWFDRNPAEAKMIITKASQAARARIAAQQARKLARR 296

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+ +    +PGKLADC       +ELFIVEGDSAGGSAKQ R+   QA+LP+RGKILNV 
Sbjct: 297 KSLLESGSMPGKLADCQSTDPRVSELFIVEGDSAGGSAKQGRDSQIQAILPIRGKILNVE 356

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +++  N ++  L+ ALG      +    LRY K+++
Sbjct: 357 KARIDRVLKNNEVQSLITALGTGIHDDFDIAKLRYHKIVL 396


>gi|83853993|gb|ABC47934.1| gyrase B subunit [Vibrio cholerae]
          Length = 384

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 142/394 (36%), Positives = 219/394 (55%), Gaps = 15/394 (3%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS+++ +T+ R   I SQ +  G+P +PL    +   + GT + 
Sbjct: 1   KVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGET-ERTGTTVR 59

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F P  + F +   F    L K  +  ++L+  V    + ++E  +K      + F + GG
Sbjct: 60  FWPSAQTFTNI-EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEGG 112

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           ++ ++     N++ I  ++F    E++     +VE A+ W +     I  + N I   +G
Sbjct: 113 IQAFVTHLNRNKTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDG 170

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH +G R ALTR +  Y +      K   +   DD       ++SV + +P+F+ QTK 
Sbjct: 171 GTHLAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKD 230

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAI 444
           KLVS + +  VE+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK A+
Sbjct: 231 KLVSSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGAL 290

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  
Sbjct: 291 DLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARF 350

Query: 505 EKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537
           +K+ ++Q++  L+ ALGC   R +Y  + LRY  
Sbjct: 351 DKMLSSQEVATLITALGCGIGRDEYNPDKLRYHN 384


>gi|259018168|gb|ACV89676.1| DNA gyrase subunit B [Nocardia veterana]
          Length = 414

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 130/420 (30%), Positives = 214/420 (50%), Gaps = 33/420 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS  +   + R    ++Q++    P   ++   +  N+ G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTRMVTEIDRDGFHWTQEYKDAKPGKLVK--GEPTNRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA---------EKY 255
           T   F  DP +F     ++   + +  Q  A+L+  +    + ++            E  
Sbjct: 59  TTQRFWADPAVFETTT-YNFETIARRLQEMAFLNKGLTITLTDERVSEAEVTDEVVSETA 117

Query: 256 GIPEKEE--------------FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
             P+ ++              +++PGGL+ +++     +  I + + +  ++  G     
Sbjct: 118 DAPKHDDGESQAPEQKVKTRTYHYPGGLEDFVKHINRTKQPIHNTVVSFTSKGTGH---E 174

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISII 358
           +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +   ++  ++ 
Sbjct: 175 LEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLT 234

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+      I+SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  +
Sbjct: 235 GDDIREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTI 294

Query: 419 LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           ++  +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGS
Sbjct: 295 VQKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGS 354

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  R+   QA+LPLRGKI+NV  A  +K+  N ++  ++ A G     ++    LRY K
Sbjct: 355 AKSGRDSMYQAILPLRGKIINVEKARIDKVLKNNEVQSIITAFGTGIHDEFDISKLRYHK 414


>gi|19909619|dbj|BAB87005.1| DNA gyrase subunit B [Marinobacterium jannaschii]
          Length = 389

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 142/401 (35%), Positives = 212/401 (52%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS EL +TV R   +  Q +  G+P  PL+   +     G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSTELRLTVRRNGKVHEQVYEHGVPREPLKVIGET-ESSG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F    L K  +  ++L+  V+     ++   E       E F 
Sbjct: 60  THVRFFPSTETFTNTT-FQFDLLAKRLRELSFLNSGVRIVLKDERAGRE-------EVFE 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  ++     N++ +++        + G     VE A+ W +     I  + N I 
Sbjct: 112 YEGGLSAFVGFLNTNKTTVNNMFHFTVMHENGV---GVEVAMQWNDSFQESIHCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAG 381
             +GGTH SG R ALTR +  Y E     +        DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLSGFRTALTRCLNNYIESEGLNKNGKIATSGDDCREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +    YL +NP ++  ++  +I+ +  R   RK R    R
Sbjct: 229 QTKDKLVSSEVKTAVEQCMGEKLAEYLQENPQDSKSVVAKMIDAARAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +ELFIVEGDSAGG AKQ R+R  QA+LPL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQEKDPALSELFIVEGDSAGGFAKQGRDRRTQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++ ++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 349 KARFDKMLSSAEVGTLITALGCGIGREEYNPDKLRYHSIII 389


>gi|297614604|gb|ADI48604.1| DNA gyrase subunit B [Shewanella chilikensis]
          Length = 382

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 138/390 (35%), Positives = 217/390 (55%), Gaps = 15/390 (3%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS++L +T+ R   ++ Q +  G P  P+++  +     GT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKLQLTIRRDGKVYEQFYKHGEPQEPIKEIGEATK-TGTE 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F P  + F D   F    L K  +  ++L+  V      +++  +       E F++ 
Sbjct: 60  IRFWPSHETFTDT-EFHYELLAKRIRELSFLNSGVGIRLVDERDNKD-------ELFHYE 111

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+K +++    N++ ++ ++F    E++     TVE A+ W +     I  + N I   
Sbjct: 112 GGIKAFVEYLNRNKTPVNKDVFHFSQERED--GITVEVAMQWNDGFQESIFCFTNNIPQR 169

Query: 326 EGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R ALTR +  Y E      K   +   DD       ++SV + +P+F+ QT
Sbjct: 170 DGGTHLAGFRAALTRNLNNYMEKEGFNKKGKTNATGDDAREGLTAVVSVKVPDPKFSSQT 229

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKT 442
           K KLVS + +  VE  + +  + YL++NP +A  ++  +I+ +  R   RK R    RK 
Sbjct: 230 KDKLVSSEVKGAVEQTMGEKLNDYLLENPADAKMIVGKIIDAARAREAARKAREMTRRKG 289

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 ALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 349

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREED 532
             +K+ ++Q++  L+ ALGC       + D
Sbjct: 350 RFDKMLSSQEVATLITALGCGIGRDEYDPD 379


>gi|213855231|ref|ZP_03383471.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 150

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 58/153 (37%), Positives = 90/153 (58%), Gaps = 5/153 (3%)

Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHD 593
           RY K+ I+ DAD DG HIA+LL   F +    L++  H+++  PPL+RI  G +  YA  
Sbjct: 1   RYGKICILADADSDGLHIATLLCALFVRHFRALVKNGHVYVALPPLYRIDLGKEVYYALT 60

Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
           EE K  +LE+ K+  KGK  + RFKGLGEM   QL+ET +D N R L+++ I+      +
Sbjct: 61  EEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTISD--EDDQ 117

Query: 654 DTQDSINKLMGTK-ADERFKFIQERASFIDDVG 685
            T   ++ L+  K +++R  ++QE+    D + 
Sbjct: 118 RTNAMMDMLLAKKRSEDRRNWLQEKGDLAD-LD 149


>gi|108860571|dbj|BAE96000.1| DNA gyrase B [Rhodococcus maanshanensis]
          Length = 410

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 132/416 (31%), Positives = 216/416 (51%), Gaps = 26/416 (6%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS ++ V +      ++Q +++ +P   ++   +   + G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTKVEVEIDNDGYHWNQTYTKAVPGELVK--GEPTKRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------ 258
           T + F  DP IF     ++A  + +  Q  A+L+  +    + ++   E+          
Sbjct: 59  TTVRFWADPDIFETTT-YNAETVARRLQEMAFLNKGLTITLTDERITDEEVAAEAEYDAD 117

Query: 259 ----------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
                         +++PGGL+ Y++     +  I + +     +  G     +E A+ W
Sbjct: 118 APKAPEVQSVRTRTYHYPGGLEDYVRHINRTKQSIHNSVVGFTAKGTGH---ELEVAMQW 174

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMIS 365
                  + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++  DD+   
Sbjct: 175 NSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDDIREG 234

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  ++   +  
Sbjct: 235 LAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQKACNEHLSHWFESNPADAKTIVTKAVSS 294

Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           ++ R+  RK RE V RK+A     LPGKLADC  N    +E++IVEGDSAGGSAK  R+ 
Sbjct: 295 AQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPSKSEIYIVEGDSAGGSAKSGRDS 354

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 MYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYHKIVL 410


>gi|115291791|gb|ABI93214.1| GyrB [Gordonia sp. D2]
          Length = 429

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 140/434 (32%), Positives = 218/434 (50%), Gaps = 33/434 (7%)

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           +T LHAGGKFD+ +Y +SGGLHGVGISVVNALS ++ + + R  +++ Q ++   P   +
Sbjct: 1   MTQLHAGGKFDSDSYAVSGGLHGVGISVVNALSTKVELEIKRNGSVWRQTYTNAEPGPLV 60

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           E   +  +  GT ++F  D KIF     ++   + +  Q  A+L+  +    + ++    
Sbjct: 61  E--GEAASGTGTSVSFWADGKIFETT-EYNIETIARRLQEMAFLNKGLTITLTDERVHEA 117

Query: 254 KYG------------------------IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFT 289
                                        +   +++P GL  Y++           +   
Sbjct: 118 VLEAEVEESEDGDASIKTEEQKATAIAKVKTRTYHYPDGLIDYIKHLNSRTKAPIHKTVV 177

Query: 290 GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
           G T K   H   VE A+ W E     + ++ NTI T EGGTHE G R ALT  + +YA  
Sbjct: 178 GFTAKGEGHE--VEIAMQWNEGYAESVHTFANTINTAEGGTHEEGFRAALTSTVNRYAID 235

Query: 349 TQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
            +   ++   +  DD+      ++SV + +P+F GQTKTKL + + +  V+    +    
Sbjct: 236 KKLIKEKDGKLSGDDIREGLAAVISVKVADPQFEGQTKTKLGNTEVKSFVQKTCNEHLAM 295

Query: 407 YLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTE 465
           +   NP EA  ++    +  + RL  R+ RE V RKTA     LPGKLADC  N     E
Sbjct: 296 WFDANPAEAKTIIRKAADSQQARLAARRARELVRRKTATDIGGLPGKLADCRSNDPSKCE 355

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
           ++IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G    
Sbjct: 356 VYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIH 415

Query: 526 SQYREEDLRYEKVI 539
            ++    LRY K++
Sbjct: 416 DEFDISKLRYNKIM 429


>gi|308153100|dbj|BAJ22139.1| DNA gyrase subunit B [Amycolatopsis methanolica]
          Length = 402

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 136/408 (33%), Positives = 214/408 (52%), Gaps = 18/408 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVG+SVVNALS  L V V+R    + Q +    P +  E         G
Sbjct: 1   SESYAVSGGLHGVGVSVVNALSRALDVEVSRDGKKWRQHYDHSKPGALEEV--GPAEGTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------EIAEKYG 256
           T  TF  DP IF     ++A  + +  Q  A+L+  +      ++        ++  K  
Sbjct: 59  TSTTFWADPDIFETTT-YNAETVSRRLQEMAFLNKGLSITLRDERVTEAETEADVDGKQA 117

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
             ++  +++PGGL+ +++    ++  I S I     +  G     VE A+ W     P +
Sbjct: 118 RVKERVYHYPGGLEDFVKHINGSKDPIHSSIICFDAKGDG---LEVEVAMQWNNSFTPSV 174

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
            ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  DD+      I+S+ 
Sbjct: 175 HTFANTINTHEGGTHEEGFRAALTRVVNAYARDKKLLKEKDENLSGDDVREGLTAIISIK 234

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + EP+F GQTKTKL + +A+  V++   +    +  +NP EA  ++   +  ++ R+  R
Sbjct: 235 LAEPQFEGQTKTKLGNSEAKSFVQSKTNEWLSDWFERNPAEAKTIINKALSSAQARMAAR 294

Query: 434 KQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           + R+ V RK A+    LPGKL DC        EL+IVEGDSAGGSAK+ R    QA+LP+
Sbjct: 295 RARDLVRRKGALEIGGLPGKLKDCQSTNPEECELYIVEGDSAGGSAKEGRESRFQAILPI 354

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           RGKI+NV  A  +++  N ++  L+ ALG      +    LRY K+++
Sbjct: 355 RGKIINVEKARIDRVLKNNEVQSLITALGTGIHDDFDLSKLRYHKIVL 402


>gi|83017290|dbj|BAE53563.1| DNA gyrase B [Microbulbifer sp. MBIC06108]
          Length = 389

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 144/401 (35%), Positives = 219/401 (54%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           ++TY++SGGLHGVG+SVVNALS EL +T+ R   I  Q +  G+P +PL    +  +  G
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSAELKMTIRRDGRIHEQNYRDGVPQAPLAVVGET-DTTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F+P P  F +   F    L K  +  ++L+  V+     ++   E       E + 
Sbjct: 60  TTVHFKPSPDTFSNI-EFHFDVLAKRLRELSFLNSGVRILLKDERSGKE-------EIYE 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL+ +++     ++ I+  +        G     VE A+ W +     I  Y N I 
Sbjct: 112 YGGGLRAFVEFLNHAKTPINKVLHFQSQRDDGI---GVEVALQWNDSFQENIYCYTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLAGFRAALTRGLNNYIEKEGLGKKDKVNTTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  +   F+ YL++NP EA  ++  +I+ ++ R   RK R    R
Sbjct: 229 QTKDKLVSSEVKTAVEQEMGQHFNDYLLENPQEAKSVVTKMIDAAKAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC Q     +E+++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQQKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVII 540
            A  +K+ ++ ++  L+ ALGC       + + +RY  +II
Sbjct: 349 KARFDKMLSSAEVGTLITALGCGIGKSEFDADKIRYHSIII 389


>gi|27530829|dbj|BAC54062.1| DNA gyrase subunit B [Nocardia nova]
          Length = 416

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 131/422 (31%), Positives = 216/422 (51%), Gaps = 32/422 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS  +   + R    +SQ++    P   ++   +  ++ G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSRMVTEIDRDGFHWSQEYKDAKPGKLVK--GEPTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T   F  DP +F     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTQRFWADPDVFETTT-YNFETISRRLQEMAFLNKGLTITLTDERVSDAEVTDEVVSETA 117

Query: 250 ---EIAEKYGIPEKE----EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
              +  E    PE +     +++PGGL+ +++     +  I + + +  ++  G     +
Sbjct: 118 EAPKHDEGAAAPEHKVKTRTYHYPGGLEDFVKHINRTKQPIHNTVVSFTSKGTGH---EL 174

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIIS 359
           E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++  
Sbjct: 175 EVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTG 234

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD+      I+SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  ++
Sbjct: 235 DDIREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIV 294

Query: 420 EWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
           +  +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGSA
Sbjct: 295 QKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSA 354

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538
           K  R+   QA+LPLRGKI+NV  A  +K+  N ++  ++ A G     ++    LRY K+
Sbjct: 355 KSGRDSMYQAILPLRGKIINVEKARIDKVLKNNEVQSIITAFGTGIHDEFDISKLRYHKI 414

Query: 539 II 540
           ++
Sbjct: 415 VL 416


>gi|82409026|gb|ABB73295.1| gyrase beta subunit [Salinispora pacifica]
 gi|82409028|gb|ABB73296.1| gyrase beta subunit [Salinispora pacifica]
 gi|82409030|gb|ABB73297.1| gyrase beta subunit [Salinispora pacifica]
 gi|82409042|gb|ABB73303.1| gyrase beta subunit [Salinispora pacifica]
          Length = 388

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 123/394 (31%), Positives = 200/394 (50%), Gaps = 9/394 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLH VG+SVVNALS  + V + +    + Q ++   P    +   +  +  G+ ++F
Sbjct: 1   VSGGLHRVGVSVVNALSTRMAVEIQKDGYFWRQSYTDSKPTPLEK--GEPTDATGSAVSF 58

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PDP +F     FD   + +  Q  A+L+  +   +  ++          +  F + GG+
Sbjct: 59  WPDPTVFETV-SFDFQTIYRRLQEMAFLNRGLTIHFLDERVDEGDDSKMREVTFCYQGGI 117

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
             +++    +++ I   +    TE+ G    +VE A+ W E     + ++ N I T EGG
Sbjct: 118 ADFVRHLNASKTSIHKSVVEFGTEEDG---MSVEIAMQWNESYGESVYTFANNINTHEGG 174

Query: 329 THESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           THE G R ALT  I +Y    +  K    +  +D+      I+SV +  P+F GQTKTKL
Sbjct: 175 THEEGFRSALTSVINRYGAEKRLLKSDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKL 234

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRK 446
            +   +  V+    +    +L +NP EA  ++ +           ++ ++   RK+ +  
Sbjct: 235 GNTPVKSFVQRVCNEWLVDWLDRNPAEAKVIITKASQAARARVAAQQARKLARRKSLLES 294

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             +PGKLADC        E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  ++
Sbjct: 295 GSMPGKLADCQSTDPRECEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDR 354

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +  N ++  L+ ALG      +  E LRY K+++
Sbjct: 355 VLKNNEVQALITALGTGIHDDFDIEKLRYHKIVL 388


>gi|157073797|dbj|BAF79897.1| gyrase B [Methylobacterium nodulans]
          Length = 392

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 149/401 (37%), Positives = 223/401 (55%), Gaps = 14/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS  L + + R     + +F  G  ++PL        KRG
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSTWLRLRIWRGGHEHAMEFRHGDAVAPLAVVGPAGEKRG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF P P+ F     FD A L K  +  A+L+  V+   +  +    K      EE  
Sbjct: 61  TEVTFLPSPETFS-MVEFDYATLEKRLRELAFLNSGVRIVLTDARHAEHKR-----EELV 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG++ +++     ++ + ++    + E+ G     VE A+ W +     +  + N I 
Sbjct: 115 YEGGVEAFVRYLDRTKTPLVAKPVVVRAERDGI---GVEVALWWNDSYHETVLPFTNNIP 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR I  YAE +    K  +++  DD       I+SV + +P+F+ 
Sbjct: 172 QRDGGTHMAGFRAALTRQITGYAESSGIAKKEKVTLSGDDCREGLTAIISVKVPDPKFSS 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTK KLVS + +  VEN L +   ++L ++P EA  ++  V E +  R   RK RE   R
Sbjct: 232 QTKDKLVSSEVRPVVENVLNEGLSNWLEEHPSEAKTIVGKVAEAAAAREAARKARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +      E+ +VEGDSAGGSAKQ R+R+ QAVLPLRGKILNV 
Sbjct: 292 KGALDIASLPGKLADCQERDPSKCEILLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q+I  L+ ALG    R ++  + LRY ++II
Sbjct: 352 RARFDKMLSSQEIGTLITALGTGIGREEFNPDKLRYHRIII 392


>gi|38224356|gb|AAR14132.1| DNA gyrase B subunit [Fusobacterium necrophorum subsp. necrophorum]
          Length = 404

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 138/413 (33%), Positives = 212/413 (51%), Gaps = 17/413 (4%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRN 201
           +N  Y++SGGLHGVGISVVNALS+   V V R+  ++ QK+ RG P+  ++     +V  
Sbjct: 1   ENDNYKVSGGLHGVGISVVNALSEWTEVKVKREGNVYYQKYLRGKPVEDVKIISTLEVGE 60

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             GT +TF+PD +IF     F+   L    +  AYL+  ++      +       I +KE
Sbjct: 61  TTGTIVTFKPDIEIFETVI-FEYEVLQHRLKELAYLNRGLEINLLDCR-----NEIGKKE 114

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCN 320
            F F GG+  +L+        + S+    + + +   +  V+ A  +   ++  I S+ N
Sbjct: 115 SFQFEGGISDFLKEVTRENQTLLSKQIHIEGQAE---QVGVDIAFTYTTGQSEVIYSFVN 171

Query: 321 TILTDEGGTHESGLRVALTR---GIKKYAELTQNKRAISIISDDLMISAVGILSVFIREP 377
            I T EG      +    T+    I + ++    ++  +            I+SV + +P
Sbjct: 172 NINTTEGRLSCDWISNLFTKGLLMILEKSQGFLKEKMENYKEATFGKELWLIISVKVPQP 231

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F GQTKTKL + +    V   L      +L  NP +   ++E ++   + R   ++ RE
Sbjct: 232 QFEGQTKTKLGNSEVNGIVNTVLSTDLKIFLEDNPNDTKLIIEKILSSKKAREAAQRARE 291

Query: 438 VNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              + + +    LPGKLADCS       E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKI
Sbjct: 292 AVLRKSVLEVGSLPGKLADCSSKKPEECEIFLVEGDSAGGSAKQGRDRYFQAILPLKGKI 351

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDG 548
           LNV  AG  K   + +I  +V A G     +  + E LRY K+I+MTDADVDG
Sbjct: 352 LNVEKAGLHKALESDEIRAMVTAFGTNIGEESFDLEKLRYGKIILMTDADVDG 404


>gi|19909585|dbj|BAB86988.1| DNA gyrase subunit B [Chromatium sp. HMD001]
          Length = 389

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 144/401 (35%), Positives = 225/401 (56%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+ L + + R   I+ Q++  G P+ PL++      + G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEWLKLRIQRGGHIYEQEYRMGEPVYPLKRVGDT-EQTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I F+P P+IF     F    + +  +  ++L+  V+   S +            + F 
Sbjct: 60  TEIRFQPSPEIFTSL-DFHYDIMARRLRELSFLNSGVRITLSEE-------ATGRSDHFE 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG++ +++    N+  I   +     E++     +VE AI W       I  Y NTI 
Sbjct: 112 YQGGIRAFVEHLNSNKEPIHPTVMHFSAERQDI---SVELAIQWNSGYQETIFCYTNTIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +GLR ALTR +  Y E     R+  +  I DD       +LSV + +P+F+ 
Sbjct: 169 QRDGGTHLAGLRAALTRTLNSYIEQEALDRSQKVRAIGDDAREGLTAVLSVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK KLVS + +  VE+ + +    +L + P EA  +   ++E +  R   RK RE+ R+
Sbjct: 229 QTKDKLVSSEVKSVVESLVAEQLSIFLEETPNEAKSIANKMLEAARARDAARKAREMTRR 288

Query: 442 TA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
              +    LPGKLADC +     +EL++VEGDSAGGSAKQ R+RS QA+LPL+GKILNV 
Sbjct: 289 KGVLDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRSFQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++ ++  L+ ALGC   R +Y  ++LRY ++II
Sbjct: 349 KARFDKMLSSAEVGTLITALGCGIGREEYNPDNLRYHRIII 389


>gi|308152465|dbj|BAJ22211.1| DNA gyrase subunit B [Corynebacterium kutscheri]
          Length = 431

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 137/437 (31%), Positives = 213/437 (48%), Gaps = 47/437 (10%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  +   + R   ++ Q F   +P    +   K     G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRVETEIKRDGHLWLQTFDHAVPAELQQL--KPARGSG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK---------- 254
           T+  F PDP+IF     F+   + K  Q  A+L+  +    +  +   E+          
Sbjct: 59  TKQRFWPDPEIFETTT-FNFDTVAKRLQEMAFLNKGLTITLTDKRASEEEIELDALAEDI 117

Query: 255 ---------------------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEI 287
                                          +K+ F++P GL+ Y+     +++ I   I
Sbjct: 118 DLAEGVSLDQLDTDADAVAATATKNSGKKKEKKKTFFYPNGLEDYVAHLNRSKTTIHPSI 177

Query: 288 FTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYA 346
              + + +      VE A+ W     + + ++ NTI T EGGTHE G R ALT  + +YA
Sbjct: 178 IAFEAKGQDH---EVEIAMQWNSGYSQSVHTFANTINTFEGGTHEEGFRAALTSLMNRYA 234

Query: 347 ELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF 404
              +   ++  ++  DD       ++SV + +P+F GQTKTKL + + +  V+  + +  
Sbjct: 235 REHKLLKEKESNLTGDDCREGLAAVVSVRVGDPQFEGQTKTKLGNTEVKGFVQRMVNEHV 294

Query: 405 DHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHG 463
             +L  NP EA  ++   +  +  R   RK R+ V RK+A     LPGKLADC       
Sbjct: 295 SDWLDANPAEAKTIINKAVSSAHARQAARKARDLVRRKSATDLGGLPGKLADCRSKDPVK 354

Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523
           +EL+IVEGDSAGGSAK  R+   QA+LPLRGKILNV  A  +K+  N ++  ++ ALG  
Sbjct: 355 SELYIVEGDSAGGSAKGGRDSMYQAILPLRGKILNVEKARLDKVLKNAEVQAIITALGTG 414

Query: 524 TRSQYREEDLRYEKVII 540
              ++    LRY K+++
Sbjct: 415 IHDEFDINKLRYHKIVL 431


>gi|157073789|dbj|BAF79893.1| gyrase B [Methylobacterium fujisawaense]
          Length = 399

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 143/408 (35%), Positives = 220/408 (53%), Gaps = 21/408 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS  L + + R +   + +F  G  ++PLE       +RG
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSSWLRLRIWRNDKEHAMEFRHGDAVAPLEVVGPGNGRRG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T ++F P  + F     FD   L K  +  A+L+  V+   +  +   +K      EE Y
Sbjct: 61  TEVSFLPSTETF-TMIEFDYGTLEKRLRELAFLNSGVRIVLTDARHAEKKR-----EELY 114

Query: 265 FPGGLKTYLQTKLENRSLIS--SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           + GG++ +++    +R  I   +      +E+ G     VE A  W +     +  + N 
Sbjct: 115 YEGGIEAFVRYLDRSRKPIDGMTSPVVVSSERDGI---RVEVAFWWNDSFNETVLPFTNN 171

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R ALTR +  YAE +    K  +S+  +D       ++SV + +P+F
Sbjct: 172 IPQRDGGTHMAGFRAALTRQVTGYAESSGIAKKEKVSLTGEDCREGLTAVISVQVPDPKF 231

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV- 438
           + QTK KLVS + +  VEN L +    +L +NP +A  ++  V+  +  R   R+ RE  
Sbjct: 232 SSQTKDKLVSSEVRPAVENVLNEGLSTWLEENPSQARSVMAKVVLAASAREAARQGRETV 291

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +      E+ +VEGDSAGGSAKQ R+R+ QAVLPLRGKILN
Sbjct: 292 TRKGALDIASLPGKLADCQERDPTKCEILLVEGDSAGGSAKQGRDRTFQAVLPLRGKILN 351

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVII 540
           V    ++++ ++ +I  L+ ALG         R  +  E LRY ++II
Sbjct: 352 VERVRADRMLSSAEIGTLITALGAGIGRSSTDREGFNPEKLRYHRIII 399


>gi|29652829|gb|AAO87384.1| DNA gyrase B [Listeria monocytogenes]
          Length = 183

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 83/184 (45%), Positives = 114/184 (61%), Gaps = 2/184 (1%)

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 2   RKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILN 61

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 62  VEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTL 121

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+K
Sbjct: 122 FYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYK 179

Query: 619 GLGE 622
           GLGE
Sbjct: 180 GLGE 183


>gi|29652831|gb|AAO87385.1| DNA gyrase B [Listeria monocytogenes]
          Length = 182

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 83/184 (45%), Positives = 114/184 (61%), Gaps = 2/184 (1%)

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 1   RKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILN 60

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 61  VEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTL 120

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+K
Sbjct: 121 FYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYK 178

Query: 619 GLGE 622
           GLGE
Sbjct: 179 GLGE 182


>gi|28974181|gb|AAO61459.1| gyrase B subunit [Bacillus safensis]
          Length = 375

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 141/384 (36%), Positives = 210/384 (54%), Gaps = 13/384 (3%)

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS  L VTV R   I  Q+F RG+P+  LE   +  +  GT   F PDP+IF + 
Sbjct: 1   SVVNALSTTLDVTVYRDGKIHYQQFKRGVPVGDLEVIGET-DVTGTTTHFVPDPEIFTET 59

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             FD   L    +  A+L+  V       +E  E+        + + GG+K+Y++    +
Sbjct: 60  IEFDYDTLANRVRELAFLTKGVNIIIEDLREGKERRNE-----YCYEGGIKSYVEHLNRS 114

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           + ++  E    + EK G    TVE A+ + +     I S+ N I T EGGTHE+G +  L
Sbjct: 115 KEVVHEEPVYIEGEKDGI---TVEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGL 171

Query: 339 TRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR I  YA      +    ++  +D+      I+S+   +P+F GQTKTKL + +A+   
Sbjct: 172 TRVINDYARKNGVFKDGDANLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTIT 231

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
           ++   +  + +L++NP  A K++E  +  +  R+  +K RE   RK+A+    LPGKLAD
Sbjct: 232 DSLFSEALEKFLLENPDSAKKIVEKGLMAARARMAAKKARELTRRKSALEVSSLPGKLAD 291

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS      +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  
Sbjct: 292 CSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRS 351

Query: 516 LVQALGCRTRSQYREEDLRYEKVI 539
           ++ ALG      +  E  RY K++
Sbjct: 352 MITALGTGIGEDFTLEKARYHKIV 375


>gi|187471787|gb|ACD11204.1| DNA gyrase B subunit [Nocardia sp. W9013]
          Length = 416

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 130/422 (30%), Positives = 214/422 (50%), Gaps = 33/422 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS  +   + R    +SQ++    P   ++   +  ++ G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSRMVTEIDRDGFHWSQEYKDAKPGKLVK--GEPTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC---------DKEIAEKY 255
           T   F  DP +F     ++   + +  Q  A+L+  +    +          D+ ++E  
Sbjct: 59  TTQRFWADPDVFETTT-YNFETISRRLQEMAFLNKGLTITLTDQRVSEAEVTDEVVSETA 117

Query: 256 GIPEKE--------------EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
             P+ +               +++PGGL+ +++     +  I + +        G     
Sbjct: 118 EAPKHDEGTAAAPEPKVKTRTYHYPGGLEDFVKHINRTKQPIHNTVVAFTRRGTGH---E 174

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISII 358
           +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +   ++  ++ 
Sbjct: 175 LEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLT 234

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+      I+SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  +
Sbjct: 235 GDDIREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTI 294

Query: 419 LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           ++  +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGS
Sbjct: 295 VQKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGS 354

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K
Sbjct: 355 AKSGRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDISKLRYHK 414

Query: 538 VI 539
           ++
Sbjct: 415 IV 416


>gi|157073813|dbj|BAF79905.1| gyrase B [Methylobacterium gregans]
 gi|157073825|dbj|BAF79911.1| gyrase B [Methylobacterium gregans]
          Length = 399

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 146/408 (35%), Positives = 221/408 (54%), Gaps = 21/408 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS  L + + R +   + +F  G   +PL+       +RG
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSVWLKLRIWRNDQEHAMEFGHGEAKAPLKVVGPGNGRRG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF P  + F     FD A L K  +  A+L+  V+   +  +   +K      EE Y
Sbjct: 61  TEVTFLPSTETF-TMVEFDYATLEKRLRELAFLNSGVRIVLTDARHAEKKR-----EELY 114

Query: 265 FPGGLKTYLQTKLENRSLIS--SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           + GG++ +++    +R  I    +    ++E+ G     VE A  W +     +  + N 
Sbjct: 115 YDGGIEAFVRYLDRSRKPIEGMQKPVVVRSERDGI---RVEVAFWWNDSFNETVLPFTNN 171

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R ALTR I  YAE +    K  +S+  +D       ++SV + +P+F
Sbjct: 172 IPQRDGGTHMAGFRAALTRQITGYAESSGVAKKEKVSLTGEDCREGLTAVISVQVPDPKF 231

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV- 438
           + QTK KLVS + +  VEN L +    +L +NP +A  L+  V+  +  R   RK RE  
Sbjct: 232 SSQTKDKLVSSEVRPAVENVLNEGLSTWLEENPSQAKALMGKVVLAASAREAARKARETV 291

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +      E+ +VEGDSAGGSAKQ R+R+ QAVLPLRGKILN
Sbjct: 292 TRKGALDIASLPGKLADCQERDPTKCEILLVEGDSAGGSAKQGRDRAFQAVLPLRGKILN 351

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVII 540
           V    ++++ ++ +I  L+ ALG         R  +  + LRY ++II
Sbjct: 352 VERVRADRMLSSAEIGTLITALGAGIGRSSTDREGFNPDKLRYHRIII 399


>gi|83017288|dbj|BAE53562.1| DNA gyrase B [Microbulbifer sp. MBIC08253]
          Length = 389

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 144/401 (35%), Positives = 219/401 (54%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           ++TY++SGGLHGVG+SVVNALS EL +T+ R   I  Q +  G+P +PL    +  +  G
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSAELKMTIRRDGRIHEQTYRDGVPQAPLAVVGET-DTTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F+P P  F +   F    L K  +  ++L+  V+     ++   E       E + 
Sbjct: 60  TTVHFKPSPDTFSNI-EFHFDVLAKRLRELSFLNSGVRILLKDERSGKE-------EIYE 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL+ +++     ++ I+  +        G     VE A+ W +     I  Y N I 
Sbjct: 112 YGGGLRAFVEFLNHAKTPINKVLHFQSQRDDGI---GVEVALQWNDSFQENIYCYTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLAGFRAALTRGLNNYIEKEGLGKKDKVNTTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  +   F+ YL++NP EA  ++  +I+ ++ R   RK R    R
Sbjct: 229 QTKDKLVSSEVKTAVEQEMGQHFNDYLLENPQEAKSVVTKMIDAAKAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC Q     +E+++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQQKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVII 540
            A  +K+ ++ ++  L+ ALGC       + + +RY  +II
Sbjct: 349 KARFDKMLSSAEVGTLITALGCGIGKSEFDADKIRYHSIII 389


>gi|9971287|dbj|BAB12461.1| DNA gyrase B subunit [Oceanospirillum maris]
 gi|9971289|dbj|BAB12462.1| DNA gyrase B subunit [Oceanospirillum maris]
          Length = 386

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 139/397 (35%), Positives = 212/397 (53%), Gaps = 17/397 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS++L +TV R   +  Q +  G+P +PL       +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLTLTVWRSGKLHEQVYVHGVPQTPLRVIGD-SDKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F P P+ F +   F    L K  +  ++L+  V      ++           + F 
Sbjct: 60  TETRFHPSPETFTNV-EFHYDILAKRLRELSFLNSGVSIILLDERS-------GRTDNFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  ++    +N++ ++         + GT   TVE A+ W E     I  + N I 
Sbjct: 112 YEGGLSAFVTYLNQNKTALNDVFHFTSEREDGT---TVEVALQWNESYQENIYCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  Y   +    K   +   +D       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLAGFRAALTRTLNTYIEQDPKVKKDKANTSGEDAREGLTAIVSVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  +   F  YL + P EA  ++  +++ +  R   RK R    R
Sbjct: 229 QTKDKLVSSEVKTAVEQEMGRLFSDYLQEKPNEAKAIVNKMLDAARAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYE 536
            A  +K+ ++ ++  L+ A+GC   R ++  + LRY 
Sbjct: 349 KARFDKMLSSVEVGTLITAMGCGIGREEFNPDKLRYH 385


>gi|198042720|gb|ACH81185.1| GyrB [Vibrio sp. UST950701-007]
          Length = 381

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 138/391 (35%), Positives = 216/391 (55%), Gaps = 14/391 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+I F P  + F +   F    L K  +  ++L+  V      ++E        + + F 
Sbjct: 60  TQIRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KHDHFM 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG++ ++     N++ I  +IF   +E++     +VE A+ W +     I  + N I 
Sbjct: 113 YEGGIQAFVDHLNTNKTPIIEKIFHFNSERED--GISVEVAMQWNDGFQENIFCFTNNIP 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ 
Sbjct: 171 QRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSS 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE+A+ +    +L++NP EA  +   +I+ +  R   RK R    R
Sbjct: 231 QTKDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 291 KGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREE 531
            A  +K+ ++Q++  L+ ALGC         
Sbjct: 351 KARFDKMLSSQEVATLITALGCGIGRDEYNP 381


>gi|86169567|gb|ABC87023.1| DNA gyrase subunit B [Leuconostoc fallax KCTC 3537]
          Length = 393

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 143/401 (35%), Positives = 219/401 (54%), Gaps = 13/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKR 203
              Y++SGGLHGVG SVVNALS EL V V R+  ++   F  G   +P+   ++    +R
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSTELDVKVVREGKVYYMDFKTGRVNTPMTILDEAPTIER 60

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F+PD  IF +   ++   LL   +  A+L+  ++      +          KE F
Sbjct: 61  GTIVHFKPDTDIFRETITYNYNTLLTRVRELAFLNKGLRISVQDKR-----PTDAVKESF 115

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTI 322
           +F GG+K Y++   +++S+I  E    + E+KG     VE A+ +  E    + ++ N I
Sbjct: 116 HFEGGIKEYVEYLNKDKSVIFPEPVYVEGEEKGI---VVEVALQYTTEVRDNLRTFTNNI 172

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE+G + ALTR I  YA      +    S+  +D+      I+S+   +P+F 
Sbjct: 173 NTYEGGTHETGFKTALTRVINDYARKNGQLKESAESLSGEDVREGMTAIVSIKHPDPQFE 232

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVN 439
           GQTKTKL + DA++  +    + F  ++++NP  A +++E  ++ +      +R +    
Sbjct: 233 GQTKTKLGNSDARQATDRMFSETFSRFMMENPAVARQIVEKGILAQRARLAAKRAREMTR 292

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +++ +    LPGKLAD   N    +ELFIVEGDSAGGSAKQ RNR  QA+LP+RGKILNV
Sbjct: 293 KQSGLEIGNLPGKLADNISNDPSLSELFIVEGDSAGGSAKQGRNRVTQAILPIRGKILNV 352

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             A  +K+  N++I  L  A+G      +  E   Y KVII
Sbjct: 353 GKATLDKVLANEEIRSLFTAMGTGFGKDFDVEKAHYHKVII 393


>gi|119226166|dbj|BAF41062.1| DNA gyrase subunit B [Rhodococcus coprophilus]
          Length = 421

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 134/427 (31%), Positives = 210/427 (49%), Gaps = 37/427 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS  L V +      + Q ++   P      + +   + G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTTLEVEIDCDGYHWEQTYTHSKPGEL--IQGEPTTRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY--------- 255
           T + F PDP IF     F+   + +  Q  A+L+  +    + ++ + E+          
Sbjct: 59  TTVRFWPDPDIFETTT-FNFETVARRLQEMAFLNKGLTITLTDERVLPEEVTDEVVLETA 117

Query: 256 ------------------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                                +   +++PGGL+ Y++     +S I + +     +  G 
Sbjct: 118 DAPKTAEDQELEAQKPQVHKVKTRVYHYPGGLEDYVRHLNRTKSPIHNSVVGFTAKGTGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRA 354
               +E A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +    ++ 
Sbjct: 178 ---ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
            ++  DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +
Sbjct: 235 PNLTGDDIREGLAAIISVKVAEPQFEGQTKTKLGNTEVKSFVQKACNEHISHWFEANPAD 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   +  +  RL  RK RE V RK+A     LPGKLADC        E++IVEGDS
Sbjct: 295 AKTIVTKAVSSAHARLAARKARELVRRKSATDIGGLPGKLADCRSKDPSKCEIYIVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    L
Sbjct: 355 AGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHEEFDIAKL 414

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 415 RYHKIVL 421


>gi|2196848|gb|AAB80841.1| DNA gyrase beta-subunit [Shewanella sp. SP-3]
          Length = 419

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 147/430 (34%), Positives = 227/430 (52%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+ +  L   GKF+  + E+      V +SVVNALS +L +T+ R   +  Q ++ G+P 
Sbjct: 1   EVFIAVLCRVGKFEVLSNEVYVDRPRVRVSVVNALSKKLQLTIRRDGKVHEQFYTHGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+++        GT I F P  + F D   F    L K  +  ++L+  V      +++
Sbjct: 61  APIKEIGDATK-TGTEIRFWPSEQTFSDV-EFHFEILAKRVRELSFLNSGVGIRLVDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + E F + GG+  +L     N++ ++ ++F    E+      TVE A+ W +
Sbjct: 119 N-------KNEFFKYEGGISAFLDYLNRNKTPVNKDVFHFMQERDD--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R ALTR +  Y E      K   +   DD      
Sbjct: 170 GYQENIFCFTNNIPQRDGGTHLAGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            ++SV + +P+F+ QTK KLVS + +  VE  + +  + YL++NP +A  ++  +++   
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSSEVKAAVEQTMGEKLNDYLLENPADAKLIVGKIVDAVR 289

Query: 428 ERLRRRKQREVN-RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK RE+  RK A+    LPGKLADC +     +E++IVEGD AGGSAKQ RNR N
Sbjct: 290 AREAARKAREMKLRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDFAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE-KVIIMTDAD 545
           QA+LPL+GKILNV  A  +K+  +Q++  L+ ALGC               + +IMTDAD
Sbjct: 350 QAILPLKGKILNVEKARFDKMLFSQEVATLITALGCGIGCGDYTLQHTGGEEEVIMTDAD 409

Query: 546 VDGAHIASLL 555
           VDG+HI +LL
Sbjct: 410 VDGSHILTLL 419


>gi|116488839|gb|ABJ98770.1| DNA gyrase B [Silicibacter lacuscaerulensis ITI-1157]
          Length = 382

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 133/385 (34%), Positives = 201/385 (52%), Gaps = 13/385 (3%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALSD L + + R       +F RG  +  L+   +  ++ GT + 
Sbjct: 1   QVSGGLHGVGVSVVNALSDWLELRIWRNGKEHFARFERGETVEHLKVVGECGDRTGTEVR 60

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F      F +   +    L K  +  A+L+  V+     ++          + E ++ GG
Sbjct: 61  FLASTDTFSN-LEYSFETLEKRLRELAFLNSGVRIILVDER-----PAERLETELFYEGG 114

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           +K +++    +++    E    K E+       VE A+ W +     +  + N I   +G
Sbjct: 115 VKEFVKYLDRSKTPAMPEPIYIKGERDDI---GVEIAMWWNDSYHETVLPFTNNIPQRDG 171

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH +G R ALTR I  YA+ +    K  ++   DD       +LSV + +P+F+ QTK 
Sbjct: 172 GTHVAGFRAALTRTINNYAQSSGIAKKEKVNFTGDDAREGLTCVLSVKVPDPKFSSQTKD 231

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444
           KLVS + +  VE  + +    +  +NP EA  ++  +IE +  R   RK RE   RKTA+
Sbjct: 232 KLVSSEVRPAVEGMVNEKLAEWFEENPNEAKTIVGKIIEAALAREAARKARELTRRKTAM 291

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               L GKL DCS+     TELF+VEGDSAGGSA+  R+R  QAVLPLRGKILNV  A  
Sbjct: 292 DVNYLAGKLKDCSEKDPSKTELFLVEGDSAGGSAQTGRDRLTQAVLPLRGKILNVERARF 351

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYR 529
           +++ ++Q+I +LV ALG        
Sbjct: 352 DRMLSSQEIGNLVMALGTGIGRDEF 376


>gi|295113023|emb|CBL31660.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Enterococcus sp. 7L76]
          Length = 183

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 59/144 (40%), Positives = 84/144 (58%), Gaps = 12/144 (8%)

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG--TKSV--YAHDEEH 596
           MTDAD DGAHI  LLLTFFY+ M  LIE   +++  PPL+++++G   KSV  YA  +  
Sbjct: 1   MTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGTGKKSVIEYAWTDGE 60

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
             +++++  K       + R+KGLGEM A QL ET MD   RTL+RV I+         +
Sbjct: 61  LAEVIDKVGK----GYMLQRYKGLGEMNAEQLWETTMDPETRTLIRVRIDD----AAQAE 112

Query: 657 DSINKLMGTKADERFKFIQERASF 680
             +  LMG K + R K+I++   F
Sbjct: 113 RRVTTLMGDKVEPRRKWIEQHVQF 136


>gi|210142364|dbj|BAG80973.1| DNA gyrase subunit B [Paenibacillus macquariensis subsp. defensor]
          Length = 389

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 152/400 (38%), Positives = 223/400 (55%), Gaps = 15/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG+SVVNALS+++ VTV  +  I+ Q++ RG+P   +    +  ++ G
Sbjct: 1   GGGYKVSGGLHGVGVSVVNALSEKVVVTVKVKGHIYQQEYRRGVPQYDVRVIGE-SDEHG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF PDP+IF +   +D   LL   +  A+L+  +    + ++             F 
Sbjct: 60  TTVTFHPDPEIFTETTVYDYGTLLTRVREIAFLNKGIALTLNDER-------ADSSVRFM 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K Y++   E +  +  E    +  +       VE A+ + +     I S+CN I 
Sbjct: 113 YEGGIKEYVKFLNEKKEALHEEPIYVEGSRD---MMQVEVALQYNDSYTENIYSFCNNIN 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHESG + ALTR I  YA  T        ++  DD+      I+SV I EP+F G
Sbjct: 170 THEGGTHESGFKSALTRIINDYARKTGVIKDSNSNLSGDDVREGLTAIISVKIPEPQFEG 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + + +   E+   +    +L +NP  + ++LE  ++ S  R   RK RE   R
Sbjct: 230 QTKTKLGNSEVRGIAESLFSEKLQEFLEENPAVSRRILEKGLQASRAREAARKARELTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS   A  +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 290 KSALEVSALPGKLADCSSKDASISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  ++I +N +I +++ A+G      +     RY KVII
Sbjct: 350 KARLDRILSNAEIRNMITAMGTGIGEDFDLSKARYHKVII 389


>gi|19909611|dbj|BAB87001.1| DNA gyrase subunit B [Methylococcus capsulatus]
          Length = 389

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 144/401 (35%), Positives = 230/401 (57%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           ++ Y++SGGLHGVG+SVVNALS+ L + + R    + Q++  G PL+PL +     +  G
Sbjct: 1   DNAYKVSGGLHGVGVSVVNALSERLWLEICRGGRRYRQEYRDGEPLAPLAEVGPA-DTTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F+P P+IF +   F    L K  +  ++L+  V+      +         + E F 
Sbjct: 60  TTVRFKPSPQIFSNI-EFHYEILAKRLRELSFLNSGVRIELEDKRS-------GKNEVFE 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           F GG++ +++   +N++ +  ++F  + E+ G     VE A+ W +     +  Y N I 
Sbjct: 112 FEGGIRAFVEHLNKNKTPLFDKVFHLQAERDGV---GVEIAMQWNDSYQENVFCYTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR + +Y E      K+ +  + DD       +LSV + +P+F+ 
Sbjct: 169 QRDGGTHLAGFRAALTRTVNQYIEEQGLLKKQKVVTVGDDAREGLTAVLSVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE+ + +  + +L++NP  A  +   V++ +  R   RK R    R
Sbjct: 229 QTKEKLVSSEVKSVVESVMAEKLNDFLLENPSIARTIANKVVDAARAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADC +     +ELFIVEGDSAGGSAKQ R+R +QA+LPL+GKILNV 
Sbjct: 289 KSALDIAGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRRSQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ +++++  L+ ALGC   R +Y  + LRY ++II
Sbjct: 349 RARFDKMLSSEEVGTLITALGCGIGREEYNPDKLRYHRIII 389


>gi|11078699|dbj|BAB17354.1| DNA gyrase subunit B [Pseudomonas fluorescens]
          Length = 387

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 144/399 (36%), Positives = 217/399 (54%), Gaps = 17/399 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P  P++         G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGD-SETTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+I FRP  + F +   F    L K  +  ++L+  V      ++   E       E F 
Sbjct: 60  TQIHFRPSDETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL+ +++    N++ ++         + G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLRAFVEYLNTNKTPVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH  G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    R
Sbjct: 229 QTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +
Sbjct: 349 KARFDKMISSQEVGTLITALGCGIGRDEYNIDKLRYHNI 387


>gi|126661928|ref|ZP_01732927.1| DNA topoisomerase IV subunit B [Flavobacteria bacterium BAL38]
 gi|126625307|gb|EAZ95996.1| DNA topoisomerase IV subunit B [Flavobacteria bacterium BAL38]
          Length = 224

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 78/235 (33%), Positives = 115/235 (48%), Gaps = 16/235 (6%)

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
             L D     +  + LFI EGDSA GS  ++R+ + QAV  LRGK LN      + +  N
Sbjct: 1   MHLTDAKNPRSLESTLFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSYGMTKKIVYEN 60

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           ++   L  AL           DLRY  ++I TDADVDG HI  LL+TFF Q   +LI+  
Sbjct: 61  EEFNLLQAALNIE----EDMGDLRYNNIVIATDADVDGMHIRLLLITFFLQFFPELIKDG 116

Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630
           HL+++  PLFR+    +++Y + EE +   +E+     K K EI+RFKGLGE+   + K 
Sbjct: 117 HLYILQTPLFRVRNKKETIYCYSEEERVNAIEKL----KPKPEITRFKGLGEISPDEFKH 172

Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
                    L  V ++K        +  +   MG    +R +FI        ++ 
Sbjct: 173 FIG--QDIRLDPVMLDKAT----SIETLLEFYMGKNTPDRQEFIINNLKV--ELD 219


>gi|296051279|gb|ADG86636.1| DNA gyrase subunit B [Gordonia polyisoprenivorans]
 gi|296051283|gb|ADG86638.1| DNA gyrase subunit B [Gordonia polyisoprenivorans]
 gi|296051285|gb|ADG86639.1| DNA gyrase subunit B [Gordonia polyisoprenivorans]
          Length = 421

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 137/426 (32%), Positives = 211/426 (49%), Gaps = 38/426 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS ++ V +      +S+ F+   P   ++   +   K G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTKVEVEIDVDGFHWSETFTDSKPDGLVK--GEPTRKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC----------------- 247
           T + F PD  IF +   F+A  + +  Q  A+L+  +    +                  
Sbjct: 59  TTVRFWPDASIFTETTSFNAETVARRLQEMAFLNKGLTITLTDRRPKAVEAPGDPNGEGE 118

Query: 248 ------------DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
                       D+E A     P+   +++P GL  Y++     ++ I   +     +  
Sbjct: 119 EGTTETAEEIKSDEEKAAAATKPKTRTYHYPDGLIDYIKHLNRTKNPIHKSVIGFTGKGT 178

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W       + ++ NTI T EGGTHE G R ALTR +  YA   +   +
Sbjct: 179 GH---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTRVVNSYAREKKLLKE 235

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
           +  ++  DD+      ++SV + +P+F GQTKTKL + + +  V  A  +  +H+   NP
Sbjct: 236 KDDNLTGDDIREGLAAVISVKVSDPQFEGQTKTKLGNTEVKSFVLKASGEHIEHWFEANP 295

Query: 413 IEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
            EA  ++   +E +  R   RK RE V RK+A     LPGKLADC  N     E+++VEG
Sbjct: 296 AEAKIIINKAVESAHARQAARKARELVRRKSATDIGGLPGKLADCRSNDPSKCEIYLVEG 355

Query: 472 DSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE 531
           DSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++   
Sbjct: 356 DSAGGSAKTGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDLS 415

Query: 532 DLRYEK 537
            LRY K
Sbjct: 416 KLRYHK 421


>gi|296051263|gb|ADG86628.1| DNA gyrase subunit B [Gordonia polyisoprenivorans]
 gi|296051265|gb|ADG86629.1| DNA gyrase subunit B [Gordonia polyisoprenivorans]
 gi|296051267|gb|ADG86630.1| DNA gyrase subunit B [Gordonia polyisoprenivorans]
 gi|296051269|gb|ADG86631.1| DNA gyrase subunit B [Gordonia polyisoprenivorans]
 gi|296051275|gb|ADG86634.1| DNA gyrase subunit B [Gordonia polyisoprenivorans]
 gi|296051277|gb|ADG86635.1| DNA gyrase subunit B [Gordonia polyisoprenivorans]
 gi|296051281|gb|ADG86637.1| DNA gyrase subunit B [Gordonia polyisoprenivorans]
          Length = 421

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 137/426 (32%), Positives = 211/426 (49%), Gaps = 38/426 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS ++ V +      +S+ F+   P   ++   +   K G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTKVEVEIDVDGFHWSETFTDSKPDGLVK--GEPTRKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC----------------- 247
           T + F PD  IF +   F+A  + +  Q  A+L+  +    +                  
Sbjct: 59  TTVRFWPDASIFTETTSFNAETVARRLQEMAFLNKGLTITLTDRRPKAVEAPGDPNGEGE 118

Query: 248 ------------DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
                       D+E A     P+   +++P GL  Y++     ++ I   +     +  
Sbjct: 119 EGTTETAEEIKSDEEKAAAATKPKTRTYHYPDGLIDYIKHLNRTKNPIHKSVIGFTGKGT 178

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W       + ++ NTI T EGGTHE G R ALTR +  YA   +   +
Sbjct: 179 GH---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTRVVNSYAREKKLLKE 235

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
           +  ++  DD+      ++SV + +P+F GQTKTKL + + +  V  A  +  +H+   NP
Sbjct: 236 KDDNLTGDDIREGLAAVISVKVSDPQFEGQTKTKLGNTEVKSFVLKASGEHIEHWFEANP 295

Query: 413 IEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
            EA  ++   +E +  R   RK RE V RK+A     LPGKLADC  N     E+++VEG
Sbjct: 296 AEAKIIINKAVESAHARQAARKARELVRRKSATDIGGLPGKLADCRSNDPSKCEIYLVEG 355

Query: 472 DSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE 531
           DSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++   
Sbjct: 356 DSAGGSAKTGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDLA 415

Query: 532 DLRYEK 537
            LRY K
Sbjct: 416 KLRYHK 421


>gi|157073823|dbj|BAF79910.1| gyrase B [Methylobacterium tardum]
          Length = 399

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 147/408 (36%), Positives = 221/408 (54%), Gaps = 21/408 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS  L + + R +T  + +F  G  ++PLE       +RG
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSSWLRLRIWRNDTEHAMEFRHGDAVAPLEVVGPGNGRRG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF P  + F     FD   L K  +  A+L+  V+   +  +   +K      EE Y
Sbjct: 61  TEVTFLPSTETF-TMIEFDYGTLEKRLRELAFLNSGVRIVLTDARHAEKKR-----EELY 114

Query: 265 FPGGLKTYLQTKLENRSLIS--SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           + GG++ +++    +R  I   +      +E+ G     VE A  W +     +  + N 
Sbjct: 115 YEGGIEAFVRYLDRSRKPIDGMTSPVVVSSERDGI---RVEVAFWWNDSFNETVLPFTNN 171

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R ALTR I  YAE +    K  +S+  +D       ++SV + +P+F
Sbjct: 172 IPQRDGGTHMAGFRAALTRQITGYAESSGIAKKEKVSLTGEDCREGLTAVISVQVPDPKF 231

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV- 438
           + QTK KLVS + +  VEN L +    +L +NP +A  ++  V+  +  R   RK RE  
Sbjct: 232 SSQTKDKLVSSEVRPAVENVLNEGLSTWLEENPSQARSVMGKVVLAASAREAARKARETV 291

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +      E+ +VEGDSAGGSAKQ R+R+ QAVLPLRGKILN
Sbjct: 292 TRKGALDIASLPGKLADCQERDPTKCEILLVEGDSAGGSAKQGRDRAFQAVLPLRGKILN 351

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVII 540
           V    ++++ ++ +I  L+ ALG         R  +  E LRY ++II
Sbjct: 352 VERVRADRMLSSAEIGTLITALGAGIGRSSTDREGFNPEKLRYHRIII 399


>gi|148616484|gb|ABQ96985.1| GyrB [Nocardiopsis alkaliphila]
          Length = 392

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 130/398 (32%), Positives = 207/398 (52%), Gaps = 10/398 (2%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y +SGGLHGVG+SVVNALS  L V + +   ++ Q++    P   L+K  +  ++ GT+
Sbjct: 1   SYAVSGGLHGVGVSVVNALSTALEVEIRKDGHVWRQRYEMTAPTGALDK-GEATDQTGTQ 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           ITF  D  IF     +    L +  Q  A+L+  +      ++        P  + +++ 
Sbjct: 60  ITFWADGTIFETTT-YSFETLSRRLQEMAFLNKGLAITIRDER-PEYTDDGPVVQTYHYE 117

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
            GL  ++      +    + I + + E +G     VE A+ W +     + ++ NTI T 
Sbjct: 118 EGLADFVGYINSKKEPAHASIVSFEEEGEGI---AVEVAMQWNQSYTSSVHTFANTINTT 174

Query: 326 EGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           EGGTHE G R ALT  + +YA   +   ++  ++  DD+      I+SV + +P+F GQT
Sbjct: 175 EGGTHEEGFRSALTTLVNRYARDQKLLREKEDNLTGDDIREGLTAIISVKLADPQFEGQT 234

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKT 442
           KTKL + +A+  V+    +    +  +NP EA  ++ +           R+ +    RKT
Sbjct: 235 KTKLGNTEAKSFVQKVTNEHLRDWFERNPGEAKDIVSKASQAARARVAARQARDLTRRKT 294

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
            +    LPGKL+DC        EL+IVEGDSAGGSAK  RN  NQA+LP+RGKILNV  +
Sbjct: 295 LLETTSLPGKLSDCQSTNPEECELYIVEGDSAGGSAKGGRNPHNQAILPIRGKILNVEKS 354

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             ++I  N ++  ++ ALG      +  E LRY K+++
Sbjct: 355 RIDRILKNNEVQAIITALGTGIHEDFDAEKLRYHKIVL 392


>gi|29652663|gb|AAO87301.1| DNA gyrase B [Listeria monocytogenes]
          Length = 181

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 83/183 (45%), Positives = 114/183 (62%), Gaps = 2/183 (1%)

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV
Sbjct: 1   KSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNV 60

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
             A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT F
Sbjct: 61  EKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLF 120

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
           Y+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+KG
Sbjct: 121 YRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYKG 178

Query: 620 LGE 622
           LGE
Sbjct: 179 LGE 181


>gi|19909631|dbj|BAB87011.1| DNA gyrase subunit B [Rhodobacter capsulatus]
          Length = 397

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 139/405 (34%), Positives = 218/405 (53%), Gaps = 18/405 (4%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           + Y++SGGLHGVG+SVVNALSD L + V R + ++  +F +G  +  + +  +   ++GT
Sbjct: 1   NAYKVSGGLHGVGVSVVNALSDWLELKVWRNDKVYFARFEKGDCVVHVHEIGEAPGEKGT 60

Query: 206 RITFRP-----DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
            + F       DP+       +    L    +  A+L+  V+     ++        P +
Sbjct: 61  EVRFMASSKTNDPEGTFSNLDYVFKTLETRLRELAFLNSGVRIILEDER-----PAEPLR 115

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
            E ++ GG++ +++    +++ +  +      E +G     VE A+ W +     +  + 
Sbjct: 116 SELHYDGGVREFVKYLDRSKTAVMPDPIYMVGEVRGI---GVEVAMWWNDSYHETVLPFT 172

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREP 377
           N I   +GGTH +G R ALTR I KYA+ +   +        DD       +LSV + +P
Sbjct: 173 NNIPQRDGGTHLAGFRGALTRTITKYAQDSGIAKREKIDFTGDDAREGLTCVLSVKVPDP 232

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F+ QTK KLVS + +  VEN + +    +  ++P EA  ++  +IE +  R   RK RE
Sbjct: 233 KFSSQTKDKLVSSEVRPAVENLVNEKLAEWFEEHPTEAKGIVGKIIEAALAREAARKARE 292

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              RKTA+    LPGKLADC +     +E+F+VEGDSAGGSAKQ R R NQAVLPLRGKI
Sbjct: 293 LTRRKTAMDVASLPGKLADCQEKDPALSEVFLVEGDSAGGSAKQGRERKNQAVLPLRGKI 352

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
           LNV  A  +++ ++ QI  L+ ALG    R ++    LRY K++I
Sbjct: 353 LNVERARFDRMLSSDQIGTLITALGTGIGRDEFNIAKLRYHKIVI 397


>gi|19909573|dbj|BAB86982.1| DNA gyrase subunit B [Maricaulis maris]
          Length = 393

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 150/402 (37%), Positives = 214/402 (53%), Gaps = 15/402 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKR 203
            ++Y++SGGLHGVG+SVVNALSD + +T+ R       +F RG     L+        ++
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSDWMDLTIWRNGKKHWMRFRRGDAEEDLKVMGDAEPGQK 60

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F P  + F     F+   L    +  A+L+  VK     ++E          +  
Sbjct: 61  GTEVRFMPSEETF-TMTEFNRETLQHRLRELAFLNSGVKITLRDERE-----AELYSDTM 114

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT-HRGTVEWAIAWCEENPEITSYCNTI 322
            + GG+  ++     N++ I +       EK G      +EW  ++ E    +  + N I
Sbjct: 115 VYDGGVAAFVAHLDRNKTPIFTPPVLITGEKDGVAVEAALEWNDSYHE---NVLCFTNNI 171

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR I  YA  +    K  +SI  DD       +LSV + +P+F+
Sbjct: 172 PQRDGGTHLAGFRGALTRIINTYAASSGLASKAKVSISGDDAREGLTCVLSVKVPDPKFS 231

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VN 439
            QTK KLVS + +  VE A+ +    +  ++P EA  ++  +IE +  R   RK RE   
Sbjct: 232 SQTKDKLVSSEVRPAVEGAVGEALAEWFEEHPTEAKMVVGKIIEAAAAREAARKARELTR 291

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK+A+    LPGKLADC +     +ELFIVEGDSAGGSAKQ R+R NQAVLPLRGKILNV
Sbjct: 292 RKSALEISSLPGKLADCQEKDPAKSELFIVEGDSAGGSAKQGRHRENQAVLPLRGKILNV 351

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
             A  +K+  ++Q+  L+ ALG    R Q   E LRY KVII
Sbjct: 352 ERARFDKMLGSEQVGTLITALGTGIGRDQINYEKLRYHKVII 393


>gi|108755446|dbj|BAE95687.1| DNA gyrase B [Segniliparus rotundus DSM 44985]
          Length = 417

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 133/423 (31%), Positives = 209/423 (49%), Gaps = 33/423 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS +L V +      +SQ + +  P    +       + G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSYKLEVEIDVDGFHWSQSYDKAKPGPLTK--GDPVKRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------ 258
           T + F  DP+IF     +D   + +  Q  A+L+  +    +  +E              
Sbjct: 59  TTVRFWADPEIFETTH-YDFDTIARRLQEMAFLNKGLIITLTDLREGQIDAAEDGEALDT 117

Query: 259 -----------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
                            ++ E+++PGGL  Y+      ++ + + I + + + +G     
Sbjct: 118 AEVARSEQEAQAQAPAVKRREYHYPGGLHDYVGHINRTKTAVHNSIVSFEGKGEGH---E 174

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISII 358
           VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++  ++ 
Sbjct: 175 VEIAMQWNSGYTESVYTFANTINTHEGGTHEEGFRAALTSTMNKYARDKKILKEKDKNLT 234

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+      ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP EA  +
Sbjct: 235 GDDVREGLAAVISVKLGEPQFEGQTKTKLGNTEIRSFVQKICNEELTHWFEANPSEAKLI 294

Query: 419 LEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           +    +    R   R  RE   RKTA     LPGKLADC       +E++IVEGDSAGGS
Sbjct: 295 VTKAQQAYLAREAARSARETVRRKTATDIGGLPGKLADCRSKDPSKSEVYIVEGDSAGGS 354

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  RN   QA+LP+RGKI+NV  A  +++  N ++  ++ A G     ++    LRY K
Sbjct: 355 AKSGRNSEFQAILPIRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDLAKLRYHK 414

Query: 538 VII 540
           +++
Sbjct: 415 IVL 417


>gi|38707277|emb|CAE82159.1| DNA gyrase B subunit [Shewanella decolorationis]
          Length = 395

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 145/406 (35%), Positives = 222/406 (54%), Gaps = 17/406 (4%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +L +T+ R+  +  Q ++ G+P  P++         GT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSKKLQLTIRREGKVHEQFYTHGVPDEPIKVIGDATK-TGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            I F P  + F D   F    L K  +  ++L+  V      +++        + E F +
Sbjct: 60  EIRFWPSEETFSDV-EFHFEILAKRVRELSFLNSGVGIRLVDERDN-------KNEFFKY 111

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG+  ++     N++ ++ ++F    E+      TVE A+ W +     I  + N I  
Sbjct: 112 EGGISAFVDYLNRNKTPVNKDVFHFMQERDD--GITVEVAMQWNDGYQESIFCFTNNIPQ 169

Query: 325 DEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVG-ILSVFIREPEFAG 381
            +GGTH +G R ALTR +  Y E      K   +   DD      G      + +P+F+ 
Sbjct: 170 RDGGTHLAGFRSALTRNLNNYMENEGYNQKGKTNATGDDAPRRFNGPGFQFKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  + +  + YL++NP +A  ++  +++ +  R   RK R    R
Sbjct: 230 QTKDKLVSSEVKAAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDAD 545
            A  +K+ ++Q++  L+ ALGC   R +Y  +  RY  +IIMTDAD
Sbjct: 350 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKTRYHNIIIMTDAD 395


>gi|19909641|dbj|BAB87016.1| DNA gyrase subunit B [Rhodovulum strictum]
          Length = 386

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 135/395 (34%), Positives = 213/395 (53%), Gaps = 14/395 (3%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALSD L + + R       +F RG  +  L    +   ++GT + 
Sbjct: 1   KVSGGLHGVGVSVVNALSDWLELRIWRDGKEHFARFERGDTVEHLRVVGEAGGRKGTEVR 60

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F      F +   +    L    +  A+L+  V+     ++        P + E ++ GG
Sbjct: 61  FLASLDTFSNL-DYVFKTLENRLRELAFLNSGVRIVLEDER-----PAEPLRTELFYEGG 114

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           ++ +++    +++ + +E      E+ G     VE A+ W +     +  + N I   +G
Sbjct: 115 VREFVRYLDRHKTPVMAEPIFMTGERDGI---GVEIAMWWNDSYHETVLPFTNNIPQRDG 171

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH +G R ALTR I  YA  +   +   ++   DD       +LSV + +P+F+ QTK 
Sbjct: 172 GTHLAGFRGALTRTINNYAMSSGIAKREKVNFTGDDAREGLTCVLSVKVPDPKFSSQTKD 231

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444
           KLVS + +  VE+ + +    +  +NP +A +++  +IE +  R   RK RE   RKTA+
Sbjct: 232 KLVSSEVRPAVESLVNEKLAEWFEENPQQARQIVGKIIEAALAREAARKARELTRRKTAM 291

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC +     +E+F+VEGDSAGGSAKQ R+R+NQAVLPLRGKILNV  A  
Sbjct: 292 DVASLPGKLADCQERDPAKSEIFLVEGDSAGGSAKQGRSRANQAVLPLRGKILNVERARF 351

Query: 505 EKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
           +++ ++Q+I  L+ ALG    R ++    L Y K+
Sbjct: 352 DRMLSSQEIGTLITALGTGIGRDEFDISKLGYHKI 386


>gi|32364162|gb|AAP80229.1| GyrB [Actinobacillus lignieresii]
          Length = 380

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 138/390 (35%), Positives = 216/390 (55%), Gaps = 17/390 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS +L +T+ R+  +  Q +S G P +PL       +K GT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGEPDAPLTVIGDT-DKTGTM 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F P   IF +K  F+   L K  +  ++L+  V      +++  E       E F + 
Sbjct: 60  VRFWPSLDIFKNKTEFEYKILSKRLRELSFLNSGVSIRLIDERDGKE-------EHFKYE 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKG-THRGTVEWAIAWCEENPEITSYCNTILTD 325
           GG+K Y++   E ++ I +  F  +  K     +  ++W  ++   N  +  + N I   
Sbjct: 113 GGIKAYVEYLNEGKTHIHNTPFYFQPRKTVSVLKCQLQWNDSY---NENVYCFTNNIPQR 169

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKR----AISIISDDLMISAVGILSVFIREPEFAG 381
           +GG H +G R ALTR +K Y + +   +     I    DD     V ++SV + +P+F+ 
Sbjct: 170 DGGKHLAGFRGALTRALKNYMDNSGVVKKAESNIDASGDDAREGLVAVISVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NR 440
           QTK KLVS + +  VE+++ +    YL +NP +A  ++  +I+ +  R   RK RE+  R
Sbjct: 230 QTKDKLVSSEVRGAVESSMNEALQEYLAENPDDAKNIVTKIIDAARAREAGRKAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ R+R NQA+LPL+GKILNV 
Sbjct: 290 KGALDLGGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530
            A  +K+ ++Q++  L+ ALG         
Sbjct: 350 KARFDKMLSSQEVATLITALGTGIGRDDYN 379


>gi|82409024|gb|ABB73294.1| gyrase beta subunit [Salinispora tropica]
          Length = 388

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 124/394 (31%), Positives = 203/394 (51%), Gaps = 9/394 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLH VG+SVVNALS  + V + +   ++ Q ++   P    +   +  +  G+ ++F
Sbjct: 1   VSGGLHRVGVSVVNALSTRMAVEIQKDGYLWRQSYTDSKPTPLEK--GESTDATGSAVSF 58

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PDP++F     FD   + +  Q  A+L+  +   +  ++      G   +  F + GG+
Sbjct: 59  WPDPRVFETV-AFDFQTIYRRLQEMAFLNRGLTIHFLDERVDEGDDGKMREVTFCYQGGI 117

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
             +++    +++ I   +    TE+ G    +VE A+ W E     + ++ N I T EGG
Sbjct: 118 ADFVRHLNASKTSIHKSVVEFGTEEDG---MSVEIAMQWNESYGESVYTFANNINTHEGG 174

Query: 329 THESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           THE G R ALT  I +Y    +  K    +  +D+      I+SV +  P+F GQTKTKL
Sbjct: 175 THEEGFRSALTSVINRYGAEKRLLKSDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKL 234

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRK 446
            +   +  V+    +    +L +NP EA  ++ +           ++ ++   RK+ +  
Sbjct: 235 GNTPVKSFVQRVCNEWLVDWLDRNPAEAKVIITKASQAARARVAAQQARKLARRKSLLES 294

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             +PGKLADC        E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  ++
Sbjct: 295 GSMPGKLADCQSTDPRECEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDR 354

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +  N ++  L+ ALG      +  E LRY K+++
Sbjct: 355 VLKNNEVQALITALGTGIHDDFDIEKLRYHKIVL 388


>gi|317420210|emb|CBW30262.1| gyrase B subunit [Pseudoalteromonas peptidolytica]
          Length = 388

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 138/397 (34%), Positives = 220/397 (55%), Gaps = 15/397 (3%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS++L +T+ R   +  QK++ G+P +PL    +     GT + 
Sbjct: 2   KVSGGLHGVGVSVVNALSEKLQLTIRRDGKVHQQKYTMGVPDAPLGIIGEA-ETTGTELR 60

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F P  + F D   F    L K  +  ++L+  V    S ++E        +++ F + GG
Sbjct: 61  FWPSAETFSDTN-FHYDILAKRLRELSFLNSGVSIILSDERE------ENKQDHFKYEGG 113

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           ++ +++     ++ +   +F   TE++     +VE ++ W +     I  + N I   +G
Sbjct: 114 IQAFVEYLNRKKTPVHQSVFHFSTERED--GISVEVSMQWNDGFQENIYCFTNNIPQRDG 171

Query: 328 GTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH +G R ALTR +  Y E      K   +   DD       ++SV + +P+F+ QTK 
Sbjct: 172 GTHLAGFRAALTRTLNTYMEKEGFNKKHKTNATGDDAREGLTAVVSVKVPDPKFSSQTKD 231

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-I 444
           KLVS + +  VE  + +    +L++NP +A  ++  +++ +  R   RK RE+ R+   +
Sbjct: 232 KLVSSEVKGAVEQMMAEKLTEFLLENPGDAKTVVNKIVDAARAREAARKAREMTRRKGVM 291

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               L GKLADC +      EL+IVEGDSAGG AKQ RNR NQA+LPL+GKILNV  A  
Sbjct: 292 DLAGLRGKLADCQERDPALXELYIVEGDSAGGXAKQGRNRKNQAILPLKGKILNVEKARF 351

Query: 505 EKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
           +K+ ++Q++  L+ ALGC   R +Y  E LRY ++I 
Sbjct: 352 DKMLSSQEVATLITALGCGIGRDEYNPEKLRYHRIIS 388


>gi|198042698|gb|ACH81174.1| GyrB [Pseudoalteromonas sp. UST050418-027]
          Length = 385

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 136/391 (34%), Positives = 215/391 (54%), Gaps = 15/391 (3%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS++L +TV R+  +  Q ++ G+P +PL       +  GT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKLKLTVRREGKLHEQFYTMGVPDAPLAVIGD-SDTTGTEL 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F    L K  +  ++L+  V    + ++E        + + F + G
Sbjct: 60  RFWPSAETFTNL-DFHYDILAKRLRELSFLNSGVSIILNDERE------ENKSDHFKYEG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G++ +++    N++ I   +F    E+      +VE ++ W +     I  + N I   +
Sbjct: 113 GIQAFVEYINRNKTPIHKGVFHFTHER-VEDGISVEVSMQWNDAYQENIYCFTNNIPQRD 171

Query: 327 GGTHESGLRVALTRGIKKYA----ELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
           GGTH +G R ALTR +  +        + K   +   DD       ++SV + +P+F+ Q
Sbjct: 172 GGTHLAGFRSALTRTLNNFMEKEGFNKKAKTTSNATGDDAREGLTAVISVKVPDPKFSSQ 231

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRK 441
           TK KLVS + +  VE A+ + F  +L++NP++A  ++  +I+ S  R   RK R    RK
Sbjct: 232 TKDKLVSSEVKSAVEQAMAEKFTEFLLENPVDAKIVVGKIIDASRAREAARKAREMTRRK 291

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  
Sbjct: 292 GAMDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 351

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           A  +K+ ++Q++  L+ ALGC         +
Sbjct: 352 ARFDKMLSSQEVATLITALGCGIGRDEYNPE 382


>gi|11078693|dbj|BAB17351.1| DNA gyrase subunit B [Pseudomonas fluorescens]
          Length = 388

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 144/400 (36%), Positives = 218/400 (54%), Gaps = 17/400 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P  P++         G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGD-SETTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+I F+P  + F +   F    L K  +  ++L+  V      ++   E       E F 
Sbjct: 60  TQIHFKPSEETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL+ +++    N++ ++         + G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLRAFVEYLNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH  G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    R
Sbjct: 229 QTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 349 KARFDKMISSQEVGTLITALGCGIGRDEYNIDKLRYHNII 388


>gi|3985988|dbj|BAA34870.1| DNA gyrase subunit B protein [Nitrosomonas sp. JL21]
          Length = 389

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 142/401 (35%), Positives = 225/401 (56%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+ L +T+ R   +   +F  G+P+ PLE   +     G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEWLKLTIRRNGKVHHMEFRMGVPMKPLEVIGESGRH-G 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F    +IFG    +      K  +  ++L+  VK      +         ++E+F 
Sbjct: 60  TEVHFLASQEIFGQV-EYHYDIFAKRLRELSFLNNGVKIHLIDQR-------TGKEEKFA 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           F GG+K +++    +++++   IF     K      TVE A+ W +    ++  + N I 
Sbjct: 112 FTGGIKNFVEYINRSKTVLHPAIFYTTGVKDNI---TVEVAMQWNDSYTEQVLCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +GLR A+TR +  Y E  +   K  +    DD+      +LSV + EP+F+ 
Sbjct: 169 QKDGGTHLTGLRAAMTRTLNNYIEKNELAKKAKVETSGDDMREGLSCVLSVKLFEPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK KLVS + +  VE  +      +L++NPI+A  +   +IE +  R   RK RE+ R+
Sbjct: 229 QTKEKLVSSEVRPVVEEVVTQKLSEFLLENPIDAKTICNKIIEAARAREAARKARELTRR 288

Query: 442 TA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
              +  + LPGKLADC +      EL++VEGDSAGGSAKQ R+R  QA++PL+GKILNV 
Sbjct: 289 KGVLDSMGLPGKLADCQEKNPELCELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q+I+ L+ ALG    + +Y  + LRY ++II
Sbjct: 349 KARFDKLISSQEIISLITALGTGIGKDEYNPDKLRYHRIII 389


>gi|308152511|dbj|BAJ22234.1| DNA gyrase subunit B [Mycobacterium tokaiense]
          Length = 419

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 134/424 (31%), Positives = 212/424 (50%), Gaps = 35/424 (8%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y++SGGLHGVG+SVVNALS  L   V +    + Q + R +P +   ++ +   + GT
Sbjct: 2   GAYQVSGGLHGVGVSVVNALSTRLEADVRKDGHEWFQTYERSVPGTL--RQGEKTRETGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK----------- 254
            I F  DP IF     +D   + +  Q  A+L+  +    S ++  A++           
Sbjct: 60  TIRFWADPDIFETTT-YDFETVARRLQEMAFLNKGLTINLSDERVTADEVVDEVVSDTAE 118

Query: 255 --------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                             +K  F++PGGL  +++     ++ I   +     +  G    
Sbjct: 119 APKTAEEKAAESAAPHKIKKRTFHYPGGLVDFVKHINRTKTAIQGSVIDFDGKGPGH--- 175

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISI 357
            VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +     +  ++
Sbjct: 176 EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKDKDPNL 235

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP EA  
Sbjct: 236 TGDDIREGLAAVISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEELQHWFDANPAEAKI 295

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGG
Sbjct: 296 VVNKAVSSAQARMAARKARELVRRKSATDLGGLPGKLADCRSTDPSKSELYVVEGDSAGG 355

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY 
Sbjct: 356 SAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDLARLRYH 415

Query: 537 KVII 540
           K+++
Sbjct: 416 KIVL 419


>gi|259018114|gb|ACV89649.1| DNA gyrase subunit B [Nocardia takedensis]
          Length = 413

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 129/419 (30%), Positives = 207/419 (49%), Gaps = 32/419 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS  L   V      ++Q++    P      + +   + G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTRLEAEVDTDGYHWTQQYKDAKPGKL--IQGEATERTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK---------- 254
           T I F  DP++F     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTIRFWADPEVFETTT-YNFETVSRRLQEMAFLNKGLTIKLTDERVSDSDVTDEVVSETA 117

Query: 255 ------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
                           +   +++PGGL+ +++     +S I + +     +  G     +
Sbjct: 118 EAPKQGDTAAPAEHKVKTRTYHYPGGLEDFVRHITRTKSPIHNSVVGFTGKGTGH---EL 174

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359
           E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +   ++  ++  
Sbjct: 175 EVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKRLLKEKDGNLTG 234

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD+      I+SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  ++
Sbjct: 235 DDIREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQKTCNEHLTHWFEANPADAKTIV 294

Query: 420 EWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
              +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGSA
Sbjct: 295 NKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSA 354

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           K  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K
Sbjct: 355 KSGRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYHK 413


>gi|29652881|gb|AAO87410.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652994|gb|AAO87466.1| DNA gyrase B [Listeria monocytogenes]
          Length = 193

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 87/195 (44%), Positives = 120/195 (61%), Gaps = 3/195 (1%)

Query: 428 ERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            RL  ++ REV  + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  
Sbjct: 1   ARLAAKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLF 60

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADV 546
           QA+LP+RGKILNV  A  ++I  N++I  +  A+G      +     RY K+IIMTDADV
Sbjct: 61  QAILPIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADV 120

Query: 547 DGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKK 606
           DGAHI +LLLT FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L     
Sbjct: 121 DGAHIRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL-- 178

Query: 607 HGKGKIEISRFKGLG 621
            G  K  I R+KGLG
Sbjct: 179 DGDTKYSIQRYKGLG 193


>gi|29652871|gb|AAO87405.1| DNA gyrase B [Listeria monocytogenes]
          Length = 177

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 83/179 (46%), Positives = 112/179 (62%), Gaps = 2/179 (1%)

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A 
Sbjct: 1   LEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKAR 60

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ M
Sbjct: 61  LDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYM 120

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
             L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+KGLGE
Sbjct: 121 RPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYKGLGE 177


>gi|26891794|gb|AAN84792.1| DNA gyrase subunit B [Mesoplasma florum L1]
          Length = 389

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 150/399 (37%), Positives = 218/399 (54%), Gaps = 14/399 (3%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           +ISGGLHGVG SVVNALS  + V V R+  I  Q FS G       +     N+ GT + 
Sbjct: 1   KISGGLHGVGASVVNALSLYVDVQVKREGKIHHQVFSGGGTQQTEIEIIGETNETGTIVR 60

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F+PDP+IF +   FD   +    +  +YL+  +    +  +       I +  E++FP G
Sbjct: 61  FKPDPEIFLEGTEFDYETIRNKVKQLSYLNKGLVIELNDLR-------IDKHVEYHFPNG 113

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEG 327
           +  Y++ K E +  I+  IF    +        VE A+ +  E  E   ++ N I T EG
Sbjct: 114 ILDYVKEKNETKVKINPSIFYVDDKHDDI---EVEVALQYNAEYQENLITFVNNINTHEG 170

Query: 328 GTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTHE GLR +L R I +YAE   T NK A     DD+    V I+S+   +P++ GQTKT
Sbjct: 171 GTHEDGLRQSLVRVINRYAEKVATGNKPAAKYSWDDIKEGMVCIVSIRHTDPQYEGQTKT 230

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAI 444
           KL + DA++ V+  + D F+ +L+++P +A  +++      + R+  ++ RE   RK+A+
Sbjct: 231 KLANPDAKKAVDAVVGDAFEEFLLKSPEDAKAIIDKNANAQKARIAAQRAREETRRKSAL 290

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC        EL++VEGDSAGGSAK  RNR  QA+LPLRGK+LNV     
Sbjct: 291 DTFSLPGKLADCESKDPEIAELYLVEGDSAGGSAKTGRNRRFQAILPLRGKVLNVERVAE 350

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTD 543
            +   N +I  +V A+G   +       LRY K++IMTD
Sbjct: 351 VRAFANNEIKSIVTAIGTGIKEDIDLSKLRYGKIVIMTD 389


>gi|27530827|dbj|BAC54061.1| DNA gyrase subunit B [Nocardia otitidiscaviarum]
          Length = 417

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 133/423 (31%), Positives = 217/423 (51%), Gaps = 33/423 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS  +HV + R    +SQ++    P   ++       + G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTRMHVEIDRDGYHWSQEYKDSKPGKLIK--GDPTKRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T  TF  DP IF     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTQTFWADPNIFETTV-YNFETVARRLQEMAFLNKGLTITLTDERVSEGEITDEVVSETA 117

Query: 250 ---EIAEKYGIP-----EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
              +  ++   P     +   +++PGGL+ Y++     ++ I + I +   +  G     
Sbjct: 118 EAPKHLDENTPPAEPKVKTRTYHYPGGLEDYVKHINRTKTPIHNSIVSFTGKGTGH---E 174

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SII 358
           +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++ 
Sbjct: 175 LEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLT 234

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+      I+SV + +P+F GQTKTKL + + +  V+    +   H+   NP +A  +
Sbjct: 235 GDDIREGLAAIVSVKVADPQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTI 294

Query: 419 LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           ++  +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGS
Sbjct: 295 VQKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGS 354

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  R+   QA+LPLRGKI+NV  +  +K+  N ++  ++ A G     ++    LRY K
Sbjct: 355 AKSGRDSMYQAILPLRGKIINVEKSRIDKVLKNNEVQSIITAFGTGIHDEFDISKLRYHK 414

Query: 538 VII 540
           +++
Sbjct: 415 IVL 417


>gi|164608632|gb|ABY62607.1| DNA gyrase beta subunit [Vibrio sp. MdR7]
 gi|164608634|gb|ABY62608.1| DNA gyrase beta subunit [Vibrio sp. SA5]
 gi|164608636|gb|ABY62609.1| DNA gyrase beta subunit [Vibrio sp. SA6]
          Length = 398

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 149/407 (36%), Positives = 221/407 (54%), Gaps = 14/407 (3%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD+++Y++SGGLHGVG+SVVNALS+++ +T+ R+  IF Q +  G+P +PL    K    
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSEKVELTINRKGEIFQQTYCHGVPQAPLAVTGKTDTT 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
                 +  D         F    L K  +  ++L+  V       +E        + + 
Sbjct: 61  GTKIRFWPSDQTFAN--IEFVYEILAKRLRELSFLNSGVSIILQDMRE------EDKSDH 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           F F GG++ ++     N++ I  +IF     ++      VE A+ W +     I  Y N 
Sbjct: 113 FMFEGGIQAFVDHLNRNKTPIHQKIFHFDFMRE-EDGIAVEVAMQWNDSFQENIFCYTNN 171

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R ALTR +  + +      K   S   DD       ++SV + +P+F
Sbjct: 172 IPQRDGGTHLAGFRSALTRTLNTFMDKEGFSKKAKASTSGDDAREGLTAVVSVKVPDPKF 231

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EV 438
           + QTK KLVS + +  VE+A+ +    +L +NP EA  +   +I+ +  R   RK R   
Sbjct: 232 SSQTKDKLVSSEVKSAVESAMGEKLSEFLAENPGEAKMVCSKIIDAARAREAARKAREMT 291

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILN
Sbjct: 292 RRKGALDIAGLPGKLADCQEKDPSQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILN 351

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           V  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDA
Sbjct: 352 VEKARFDKMLSSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMTDA 398


>gi|119226176|dbj|BAF41067.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 417

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 136/423 (32%), Positives = 213/423 (50%), Gaps = 33/423 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
             +Y +SGGLHGVGISVVNALS  L   V      ++Q++    P      +     + G
Sbjct: 1   GESYAVSGGLHGVGISVVNALSTRLQADVDTDGFHWTQEYKDSKPGKL--VQGGPTKRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC---------DKEIAEKY 255
           T I F PDP+IF     F    + +  Q  A+L+  +    +          D+ ++E  
Sbjct: 59  TTIKFWPDPEIFETTT-FSFETVARRLQEMAFLNKGLTITLTDQRVAEGDVIDEVVSETA 117

Query: 256 GIPEK--------------EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
             P+                 +++PGGL+ +++     ++ I + I     +  G     
Sbjct: 118 EAPKHLDENAAVAAPKIKTRTYHYPGGLEDFVKHINRTKTPIHNSIVAFTGKGTGH---E 174

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SII 358
           VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++ 
Sbjct: 175 VEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKEGNLT 234

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+      I+SV I +P+F GQTKTKL + + +  V+    +   H+   NP +A  +
Sbjct: 235 GDDIREGLAAIVSVKIADPQFEGQTKTKLGNTEVKSFVQRTCNEHISHWFEANPADAKTI 294

Query: 419 LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           ++  +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGS
Sbjct: 295 VQKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGS 354

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K
Sbjct: 355 AKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDIAKLRYHK 414

Query: 538 VII 540
           +++
Sbjct: 415 IVL 417


>gi|27530809|dbj|BAC54052.1| DNA gyrase subunit B [Nocardia flavorosea]
          Length = 418

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 133/424 (31%), Positives = 210/424 (49%), Gaps = 34/424 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L   +      +SQ +   +P      +       G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSSRLEAEIDTDGYHWSQTYKDAVPGQL--VQGDATKATG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T I F  DP +F     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTIRFWADPAVFETTT-YNFETVSRRLQEMAFLNKGLTIVLTDERVSATEVTDEVVSETA 117

Query: 250 ---EIAEKYGIPEKEE------FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
              +  E    P  E       +++PGGL+ +++     +  I + +     +  G    
Sbjct: 118 EAPKHDEGGEKPALEHKVKTRTYHYPGGLEDFVRHINRTKQPIHNSVVGFNGKGPGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SI 357
            +E A+ W       + ++ NTI T EGGTHE G R ALT  + +YA+  +  +    ++
Sbjct: 175 ELEVALQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNRYAKEKKLLKEKDGNL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  
Sbjct: 235 TGDDIREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRACNEHLAHWFEANPADAKT 294

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   +  ++ RL  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGG
Sbjct: 295 IVNKAVSSAQARLAARKARELVRRKSATDIGGLPGKLADCRSKDPSKSEIYIVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +K+  N ++  ++ A G     ++    LRY 
Sbjct: 355 SAKSGRDSMYQAILPLRGKIINVEKARIDKVLKNAEVQAIITAFGTGIHDEFDIAKLRYH 414

Query: 537 KVII 540
           K+++
Sbjct: 415 KIVL 418


>gi|118026324|emb|CAL44984.1| gyrase B [Vibrio sp. NRP 45]
          Length = 393

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 143/400 (35%), Positives = 219/400 (54%), Gaps = 15/400 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS ++ +T+ RQ +   Q +  G P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSKQVDLTIYRQGSTHQQTYRHGEPDAPLGVTGST-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT I F P    F +   F    L K  +  ++L+  V      ++E        + + F
Sbjct: 60  GTVIRFWPSENTFTNVH-FHYEILAKRLRELSFLNSGVSIKLIDERE------EDKMDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG + ++     N++ I  ++F    E++     +VE A+ W +     I  + N I
Sbjct: 113 CYEGGTQAFVDYLNTNKTPIIQKVFHFDYERED--GISVEVAMQWNDGYQENIFCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  + +      K   +   DD       I+SV + +P+F+
Sbjct: 171 PQRDGGTHLAGFRAALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAIVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVN 439
            QTK KLVS + +  VE+A+ +    +L++NP EA  +   +I+ +  R   RK      
Sbjct: 231 SQTKDKLVSSEVKSAVESAMGEKLSEFLIENPSEAKIVCSKIIDAARARDAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNI 390


>gi|116488807|gb|ABJ98769.1| DNA gyrase B [Pseudoruegeria aquimaris]
          Length = 382

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 132/388 (34%), Positives = 205/388 (52%), Gaps = 13/388 (3%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALSD L + + R       +F RG  +  LE   +  ++ GT + 
Sbjct: 1   QVSGGLHGVGVSVVNALSDWLELRIWRDGKEHFARFERGETVKHLEVVGECGDRTGTEVR 60

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F      F +   +    L    +  A+L+  V+     ++        P + E Y+ GG
Sbjct: 61  FMASTDTFSN-LDYSFKTLENRLRELAFLNSGVRIILEDER-----PAEPLRSELYYEGG 114

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           ++ +++    +++    +      E+ G     +E A+ W +     +  + N I   +G
Sbjct: 115 VQEFVRYLDRHKTSTMEDPIFVTGERDGI---GIEVAMWWNDSYHETVLPFTNNIPQRDG 171

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH +G R ALTR I  YA+ +   +   ++   DD       +LSV + +P+F+ QTK 
Sbjct: 172 GTHLAGFRGALTRTINNYAQSSGIAKREKVNFTGDDAREGLTCVLSVKVPDPKFSSQTKD 231

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444
           KLVS + +  VE  + +    +  ++P EA +++  +IE +  R   RK RE   RKTA+
Sbjct: 232 KLVSSEVRPAVEGLMNEKLSEWFEEHPNEAKQIVGKIIEAALAREAARKARELTRRKTAM 291

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC +     +ELF+VEGDSAGGSAKQ R+R NQAVLPLRGKILNV  A  
Sbjct: 292 DVASLPGKLADCQEKDPGKSELFLVEGDSAGGSAKQGRSRHNQAVLPLRGKILNVERARF 351

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREED 532
           +++ ++Q+I  L+ ALG          +
Sbjct: 352 DRMLSSQEIGTLITALGTGIGRDEFNIE 379


>gi|308153120|dbj|BAJ22149.1| DNA gyrase subunit B [Lentzea albidocapillata]
          Length = 401

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 130/406 (32%), Positives = 221/406 (54%), Gaps = 17/406 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y +SGGLHGVGISVVNALS  + + + RQ  +++Q++    P +   ++ +  ++ GT 
Sbjct: 1   SYAVSGGLHGVGISVVNALSTAVDLEIRRQGHVWTQRYEATKP-AHELRQGEATDETGTT 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP-------- 258
            TF  DP+IF     ++   + +  Q  A+L+  +      ++   E             
Sbjct: 60  TTFWADPEIFETTT-YNVETIARRLQEMAFLNKGITIILRDERVSEEDEEADAEGHQAAV 118

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITS 317
           ++  +++PGGL+ +++     R  +  ++   + + +      VE A+ W       + +
Sbjct: 119 KERVYHYPGGLEDFVRHINHTRDAVHQKVIGFEAKGED---LEVEVAMQWNTGYTASVYT 175

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + NTI T EGGTHE G R ALTR + +YA   +   ++  ++  DD+      I+SV ++
Sbjct: 176 FANTINTHEGGTHEEGFRAALTRVVNEYAREKKLLKEKDTNLTGDDIREGLAAIISVKLK 235

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           EP+F GQTKTKL + +A+  V+ +  +    +  ++P EA  ++   +  ++ R+  RK 
Sbjct: 236 EPQFEGQTKTKLGNSEAKSFVQKSTNEHLADWFERHPNEAKTIVSKAVSSAQARMAARKA 295

Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE V RK A+    LPGKL DC        EL++VEGDSAGGSAK+ R+   QA+LP+RG
Sbjct: 296 RELVRRKGALDIGGLPGKLKDCRSTNPEECELYVVEGDSAGGSAKEGRDSMYQAILPIRG 355

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           KI+NV  A  +++  N ++  ++ ALG     ++    LRY K+I+
Sbjct: 356 KIINVEKARIDRVLKNNEVQSMITALGTSIHDEFDLSKLRYHKIIL 401


>gi|28974169|gb|AAO61453.1| gyrase B subunit [Bacillus safensis]
 gi|28974171|gb|AAO61454.1| gyrase B subunit [Bacillus safensis]
          Length = 375

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 142/384 (36%), Positives = 210/384 (54%), Gaps = 13/384 (3%)

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS  L VTV R   I  Q+F RG+P+  LE   +  +  GT   F PDP+IF + 
Sbjct: 1   SVVNALSTTLDVTVYRDGKIHYQQFKRGVPVGDLEVIGET-DVTGTTTHFVPDPEIFTET 59

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             FD   L    +  A+L+  V       +E  E+        + + GG+K+Y++    +
Sbjct: 60  IEFDYDTLANRVRELAFLTKGVNIIIEDLREGKERRNE-----YCYEGGIKSYVEHLNRS 114

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           + ++  E    + EK G    TVE A+ + +     I S+ N I T EGGTHE+G +  L
Sbjct: 115 KEVVHEEPVYIEGEKDGI---TVEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGL 171

Query: 339 TRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR I  YA      +    ++  +D+      I+S+   +P+F GQTKTKL + +A+   
Sbjct: 172 TRVINDYARKNGVFKDGDANLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTIT 231

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
           ++   +  + +L++NP  A K++E  +  +  R+  +K RE   RK+A+    LPGKLAD
Sbjct: 232 DSLFSEALEKFLLENPDSAKKIVEKGLMAARARMAAKKARELTRRKSALEVSSLPGKLAD 291

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS      +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  
Sbjct: 292 CSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRA 351

Query: 516 LVQALGCRTRSQYREEDLRYEKVI 539
           ++ ALG      +  E  RY KV+
Sbjct: 352 MITALGTGIGEDFTLEKARYHKVV 375


>gi|11078703|dbj|BAB17356.1| DNA gyrase subunit B [Pseudomonas aeruginosa]
          Length = 389

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 146/401 (36%), Positives = 222/401 (55%), Gaps = 18/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           ++TY++SGGLHGVG+SVVNALS EL +T+ R N ++ Q +  G+P  PL +  +  +  G
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSHELRLTIRRHNKVWEQVYHHGVPQFPLREVGET-DGSG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F+P P+ F +   F    L K  +  ++L+  V      ++         ++E F 
Sbjct: 60  TEVHFKPSPETFSNIH-FSWDILAKRIRELSFLNSGVGILLRDER-------TGKEELFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           + GGLK +++    N++ ++       + E+ G     VE A+ W +     +  + N I
Sbjct: 112 YEGGLKAFVEYLNTNKTAVNEVFHFNVQREEDGV---GVEVALQWNDSFNENLLCFTNNI 168

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  Y E     +        DD       I+SV + +P+F+
Sbjct: 169 PQRDGGTHLAGFRSALTRNLNNYIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFS 228

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    
Sbjct: 229 SQTKDKLVSSEVKTAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTR 288

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR  QA+LPL+GKILNV
Sbjct: 289 RKGALDNAGLPGKLADCQEKDHALSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILNV 348

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 349 EKARFDKMLSSQEVGTLITALGCGIGREEYNIDKLRYHNII 389


>gi|83854003|gb|ABC47939.1| gyrase B subunit [Vibrio parahaemolyticus]
 gi|83854011|gb|ABC47943.1| gyrase B subunit [Vibrio parahaemolyticus]
          Length = 386

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 145/396 (36%), Positives = 222/396 (56%), Gaps = 15/396 (3%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K GT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKTGTQ 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F P  + F +   F    L K  +  ++L+  V      ++E        +++ F + 
Sbjct: 60  IRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KQDHFMYE 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG++ ++Q    N++ I  +IF    E++     +VE A+ W +     I  + N I   
Sbjct: 113 GGIQAFVQHLNTNKTPIIEKIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNNIPQR 170

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QT
Sbjct: 171 DGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQT 230

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKT 442
           K KLVS + +  VE+A+ +    +LV+NP EA  +   +I+ +  R   RK R    RK 
Sbjct: 231 KDKLVSSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKG 290

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 291 ALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 350

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537
             +K+ ++Q++  L+ ALGC   R +Y  + LRY  
Sbjct: 351 RFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHN 386


>gi|19912121|dbj|BAB88372.1| DNA gyrase subunit B [Bacteroides fragilis]
          Length = 390

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 144/395 (36%), Positives = 220/395 (55%), Gaps = 10/395 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+S VNALS  +   V R   I+ Q++  G PL P+++   + +  GT+  F
Sbjct: 1   VSGGLHGVGMSCVNALSTHMTTQVFRNGKIYQQEYEIGKPLYPVKEVG-IADHTGTKQQF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD  IF +   +D   L    +  AYL+  ++   +  + +  + G  + E FY   GL
Sbjct: 60  WPDDSIFTETI-YDYKILASRLRELAYLNAGLRISLTD-RRVVNEDGSFKHETFYSEEGL 117

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           + +++    +R  + +++    TEK+      +E AI +       I SY N I T EGG
Sbjct: 118 REFVRFIESSREHLINDVIYLNTEKQNIP---IEVAIMYNTGFSENIHSYVNNINTIEGG 174

Query: 329 THESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +KKYAE ++   K  + I  DD       ++SV + EP+F GQTKTK
Sbjct: 175 THLAGFRRALTRTLKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTK 234

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IR 445
           L + +    V+ A+ +  ++YL ++P EA  +++ VI  +  R   RK RE+ ++ + + 
Sbjct: 235 LGNNEVMGAVDQAVGEVLNYYLEEHPKEAKAIVDKVILAATARHAARKAREMVQRKSPMS 294

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS       ELF+VEGDSAGG+AKQ RNR+ QA+LPLRGKILNV  A   
Sbjct: 295 GGGLPGKLADCSDKDPQKCELFLVEGDSAGGTAKQGRNRAFQAILPLRGKILNVEKAMYH 354

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           K   +++I ++  ALG    ++   +    +K+  
Sbjct: 355 KALESEEIRNIYTALGVTIGTEEDSKAANIDKLRY 389


>gi|28974167|gb|AAO61452.1| gyrase B subunit [Bacillus pumilus SAFR-032]
 gi|28974173|gb|AAO61455.1| gyrase B subunit [Bacillus pumilus]
 gi|28974175|gb|AAO61456.1| gyrase B subunit [Bacillus pumilus]
          Length = 375

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 138/384 (35%), Positives = 207/384 (53%), Gaps = 13/384 (3%)

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS  L VTV R   I  Q+F RG+P+  LE   +  +  GT   F PDP+IF + 
Sbjct: 1   SVVNALSTTLDVTVYRDGKIHYQQFKRGVPVGDLEIIGET-DVTGTTTHFVPDPEIFTET 59

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             FD   L    +  A+L+  V       +E  E+        + + GG+K+Y++    +
Sbjct: 60  IEFDYDTLANRVRELAFLTKGVNIIIEDLREGKERRNE-----YCYEGGIKSYVEHLNRS 114

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           + ++  E    + E+ G    TVE A+ + +     I S+ N I T EGGTHE+G +  L
Sbjct: 115 KEVVHEEPVYIEGERDGI---TVEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGL 171

Query: 339 TRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR I  YA      +    ++  +D+      I+S+   +P+F GQTKTKL + +A+   
Sbjct: 172 TRVINDYARKNGVFKDGDSNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTIT 231

Query: 397 ENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
           ++   +  + +L++NP  A K++E  V+        ++ +    RK+A+    LPGKLAD
Sbjct: 232 DSLFSEALEKFLLENPDAAKKIVEKGVMAARARMAAKKARELTRRKSALEVSSLPGKLAD 291

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS      +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  
Sbjct: 292 CSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRS 351

Query: 516 LVQALGCRTRSQYREEDLRYEKVI 539
           ++ ALG      +  E  RY KV+
Sbjct: 352 MITALGTGIGEDFNLEKARYHKVV 375


>gi|119226160|dbj|BAF41059.1| DNA gyrase subunit B [Rhodococcus rhodnii]
          Length = 415

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 131/421 (31%), Positives = 208/421 (49%), Gaps = 31/421 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L V V      +SQ +    P   ++   +     G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLEVDVDVDGHHWSQTYIDSKPGELIK--GEPTTHTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE-------------- 250
           T + F  DP +F     ++   + +  Q  A+L+  +   ++ ++               
Sbjct: 59  TTVRFWADPDVFETT-EYNFETVARRLQEMAFLNKGLTISFTDERVLETPAEAEDVSTEV 117

Query: 251 -------IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
                     +    +   +++PGGL+ Y+Q     +  I   +     +  G     +E
Sbjct: 118 ADAPKTADEPEPVKVKNRVYHYPGGLEDYVQFINRKKQPIHKSVVGFTAKGPGH---ELE 174

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISD 360
            A+ W       + ++ NTI T EGGTHE G R ALT  +K+YA+  +    +   +  D
Sbjct: 175 IAMQWNSGYSESVHTFANTINTHEGGTHEEGFRSALTSVVKRYAKEKKLVKDKDPELSGD 234

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  ++ 
Sbjct: 235 DIREGLAAIISVKVGEPQFEGQTKTKLGNTEVKSFVQKAANEHLAHWFESNPADAKVIVT 294

Query: 421 WVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
             +  ++ R   RK RE V RK+A     LPGKL+DC        E++IVEGDSAGGSAK
Sbjct: 295 KAVSSAQARNAARKARELVRRKSATDIGGLPGKLSDCRSKDPSKCEIYIVEGDSAGGSAK 354

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
             R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K++
Sbjct: 355 SGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDLAKLRYHKIV 414

Query: 540 I 540
           +
Sbjct: 415 L 415


>gi|33146002|emb|CAD57642.2| DNA gyrase subunit B [Vibrio splendidus]
          Length = 375

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 138/384 (35%), Positives = 210/384 (54%), Gaps = 14/384 (3%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD+++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +  G P +PL       +K
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVGDT-DK 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT I F P  + F +   F    L K  +  ++L+  V       +E        + + 
Sbjct: 60  TGTEIRFWPSEETFTN-IEFHYDILAKRLRELSFLNSGVSIKLIDKRE------EDKMDH 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           F + GG++ +++    N++ I  +IF   +E+      TVE A+ W +     I  + N 
Sbjct: 113 FEYEGGIQAFVEHLNTNKTPIIQKIFHFDSERDD--GITVEVAMQWNDGYQENIYCFTNN 170

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GG H +G R ALTR +  + +      K   S   DD       I+SV + +P+F
Sbjct: 171 IPQRDGGAHLAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKF 230

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREV 438
           + QTK KLVS + +  VE+ + +    +L++NP EA  +   +I         R+ +   
Sbjct: 231 SSQTKDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMT 290

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILN
Sbjct: 291 RRKGALDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILN 350

Query: 499 VASAGSEKIRNNQQIMDLVQALGC 522
           V  A  +K+ ++Q++  L+ ALGC
Sbjct: 351 VEKARFDKMLSSQEVATLITALGC 374


>gi|119226164|dbj|BAF41061.1| DNA gyrase subunit B [Gordonia bronchialis DSM 43247]
          Length = 421

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 136/427 (31%), Positives = 209/427 (48%), Gaps = 37/427 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS ++ + +      + Q +    P    +       K G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTKVELEINYGGFHWEQTYDHAKPQPLEK--GDATRKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T + F PDP+IF     F A  + +  Q  A+L+  +    +  +               
Sbjct: 59  TLVRFWPDPEIFETTV-FSAETVARRLQEMAFLNKGLTITLTDKRPRAVEAPPGDANGDE 117

Query: 250 ------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                       E  +    P+   +++P GL  Y++     +  I + +     +  G 
Sbjct: 118 SVADAAETVKTEEEKKADAKPKTRTYHYPDGLVDYIKHLNRTKQPIHNSVIGFTAKGTGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++ 
Sbjct: 178 ---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLLKEKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             +  DD+      ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP E
Sbjct: 235 GKLTGDDIREGLAAVISVKVGDPQFEGQTKTKLGNTEVKGFVQKTCNEHLAHWFESNPAE 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  +++  ++ S+ RL  RK RE V RKTA     LPGKLADC  N     E++IVEGDS
Sbjct: 295 AKIIIKKAVDSSQARLAARKARELVRRKTATDIGGLPGKLADCRSNDPSKCEVYIVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    L
Sbjct: 355 AGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDIAKL 414

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 415 RYHKIVL 421


>gi|126035352|gb|ABN72429.1| gyrase B subunit [Vibrio cholerae]
          Length = 383

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 142/393 (36%), Positives = 218/393 (55%), Gaps = 15/393 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS+++ +T+ R   I SQ +  G+P +PL    +   + GT + F
Sbjct: 1   VSGGLHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGET-ERTGTTVRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F +   F    L K  +  ++L+  V    + ++E  +K      + F + GG+
Sbjct: 60  WPSAQTFTNI-EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEGGI 112

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           + ++     N++ I  ++F    E++     +VE A+ W +     I  + N I   +GG
Sbjct: 113 QAFVTHLNRNKTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGG 170

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  Y +      K   +   DD       ++SV + +P+F+ QTK K
Sbjct: 171 THLAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDK 230

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIR 445
           LVS + +  VE+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK A+ 
Sbjct: 231 LVSSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALD 290

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +
Sbjct: 291 LAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 350

Query: 506 KIRNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537
           K+ ++Q++  L+ ALGC   R +Y  + LRY  
Sbjct: 351 KMLSSQEVATLITALGCGIGRDEYNPDKLRYHN 383


>gi|83017299|dbj|BAE53567.1| DNA gyrase B [Microbulbifer salipaludis]
          Length = 389

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 147/401 (36%), Positives = 223/401 (55%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           ++TY++SGGLHGVG+SVVNALS+EL +T+ R   I  Q +  G+P +PL          G
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSEELKLTIRRGGKIHEQIYRHGVPDAPLAIIGDT-ETSG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F+P    F +   F   +L K  +  ++L+  V+     ++   E       E + 
Sbjct: 60  TAVHFKPSADTFTNI-EFHFEQLAKRLRELSFLNSGVRIVLRDERSGKE-------EVYE 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL+ +++   +N++ I+  +      + G     VE A+ W +     I  Y N I 
Sbjct: 112 YEGGLRAFVEFLNQNKTPINKVLHFQNQREDGI---AVEVALQWNDSFQENIYCYTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  +S   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLAGFRAALTRGLNNYIEKEGVGKKDKVSTTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  +   F+ YL++NP EA  ++  +I+ +  R   RK R    R
Sbjct: 229 QTKDKLVSSEVKPAVEQEMGHSFNDYLLENPQEAKAVVGKMIDAARAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC Q     +E+++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQQKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++ ++  L+ ALGC   +S++  + LRY  +II
Sbjct: 349 KARFDKMLSSAEVGTLITALGCGIGKSEFNPDKLRYHSIII 389


>gi|11078711|dbj|BAB17360.1| DNA gyrase subunit B [Pseudomonas aeruginosa]
 gi|11078713|dbj|BAB17361.1| DNA gyrase subunit B [Pseudomonas aeruginosa]
          Length = 389

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 146/401 (36%), Positives = 222/401 (55%), Gaps = 18/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           ++TY++SGGLHGVG+SVVNALS EL +T+ R N ++ Q +  G+P  PL +  +  +  G
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSHELRLTIRRHNKVWEQVYHHGVPQFPLREVGET-DGSG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F+P P+ F +   F    L K  +  ++L+  V      ++         ++E F 
Sbjct: 60  TEVHFKPSPETFSNIH-FSWDILAKRIRELSFLNSGVGILLRDER-------TGKEELFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           + GGLK +++    N++ ++       + E+ G     VE A+ W +     +  + N I
Sbjct: 112 YEGGLKAFVEYLNTNKTAVNEVFHFNVQREEDGV---GVEVALQWNDSFNENLLCFTNNI 168

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  Y E     +        DD       I+SV + +P+F+
Sbjct: 169 PQRDGGTHLAGFRSALTRNLNNYIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFS 228

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    
Sbjct: 229 SQTKDKLVSSEVKTAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTR 288

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR  QA+LPL+GKILNV
Sbjct: 289 RKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILNV 348

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 349 EKARFDKMLSSQEVGTLITALGCGIGREEYNIDKLRYHNII 389


>gi|308153162|dbj|BAJ22170.1| DNA gyrase subunit B [Mycobacterium chelonae]
          Length = 419

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 131/425 (30%), Positives = 215/425 (50%), Gaps = 35/425 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS ++ + + R    + Q ++  +P +   ++     K G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTKVELEILRDGHEWQQVYTASVPGTL--QQGAATKKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T + F  DP+IF     +D   + +  Q +A+L+  +    + ++               
Sbjct: 59  TTVRFWADPEIFETTT-YDFETVARRLQEQAFLNKGLTIKLTDERVSNADVTDEVVSDTA 117

Query: 250 ----------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
                       +      +   F++P GL  +++     +S I + I     + +G   
Sbjct: 118 EAPKTAEEQAAESAAPHKVKNRVFHYPDGLVDFVKHINRTKSAIHTTIVDFSGKGEGH-- 175

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAIS 356
             VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +    ++  +
Sbjct: 176 -EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKEKKLLKEKDTN 234

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           +  DD+      ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A 
Sbjct: 235 LTGDDIREGLAAVISVKVGEPQFEGQTKTKLGNTEVKSFVQKVCNEQLQHWFDSNPADAK 294

Query: 417 KLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAG
Sbjct: 295 TVVNKAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAG 354

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           GSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY
Sbjct: 355 GSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIAKLRY 414

Query: 536 EKVII 540
            K+++
Sbjct: 415 HKIVL 419


>gi|82409038|gb|ABB73301.1| gyrase beta subunit [Salinispora pacifica]
          Length = 388

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 123/394 (31%), Positives = 200/394 (50%), Gaps = 9/394 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLH VG+SVVNALS  + V + +    + Q ++   P    +   +  +  G+ ++F
Sbjct: 1   VSGGLHRVGVSVVNALSTRMAVEIQKDGYFWRQSYTDSKPTPLEK--GEPTDATGSAVSF 58

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PDP +F     FD   + +  Q  A+LS  +   +  ++          +  F + GG+
Sbjct: 59  WPDPTVFDTV-SFDFQTIYRRLQEMAFLSRGLTIHFLDERIDEGDDSKMREVTFCYQGGI 117

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
             +++    +++ I   +    T++ G    +VE A+ W E     + ++ N I T EGG
Sbjct: 118 ADFVRHLNASKTSIHKSVVEFGTDEDG---MSVEIAMQWNESYGESVYTFANNINTHEGG 174

Query: 329 THESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           THE G R ALT  I +Y    +  K    +  +D+      I+SV +  P+F GQTKTKL
Sbjct: 175 THEEGFRSALTSVINRYGAEKRLLKSDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKL 234

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRK 446
            +   +  V+    +    +L +NP EA  ++ +           ++ ++   RK+ +  
Sbjct: 235 GNTPVKSFVQRVCNEWLVDWLDRNPAEAKVIITKASQAARARVAAQQARKLARRKSLLES 294

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             +PGKLADC        E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  ++
Sbjct: 295 GSMPGKLADCQSTDPRECEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDR 354

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +  N ++  L+ ALG      +  E LRY K+++
Sbjct: 355 VLKNNEVQALITALGTGIHDDFDIEKLRYHKIVL 388


>gi|28974159|gb|AAO61449.1| gyrase B subunit [Bacillus pumilus]
 gi|28974163|gb|AAO61451.1| gyrase B subunit [Bacillus safensis]
 gi|28974179|gb|AAO61458.1| gyrase B subunit [Bacillus safensis]
          Length = 375

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 142/384 (36%), Positives = 210/384 (54%), Gaps = 13/384 (3%)

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS  L VTV R   I  Q+F RG+P+  LE   +  +  GT   F PDP+IF + 
Sbjct: 1   SVVNALSTTLDVTVYRDGKIHYQQFKRGVPVGDLEVIGET-DVTGTTTHFVPDPEIFTET 59

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             FD   L    +  A+L+  V       +E  E+        + + GG+K+Y++    +
Sbjct: 60  IEFDYDTLANRVRELAFLTKGVNIIIEDLREGKERKNE-----YCYEGGIKSYVEHLNRS 114

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           + ++  E    + EK G    TVE A+ + +     I S+ N I T EGGTHE+G +  L
Sbjct: 115 KEVVHEEPVYIEGEKDGI---TVEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGL 171

Query: 339 TRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR I  YA      +    ++  +D+      I+S+   +P+F GQTKTKL + +A+   
Sbjct: 172 TRVINDYARKNGVFKDGDANLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTIT 231

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
           ++   +  + +L++NP  A K++E  +  +  R+  +K RE   RK+A+    LPGKLAD
Sbjct: 232 DSLFSEALEKFLLENPDSAKKIVEKGLMAARARMAAKKARELTRRKSALEVSSLPGKLAD 291

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS      +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  
Sbjct: 292 CSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRA 351

Query: 516 LVQALGCRTRSQYREEDLRYEKVI 539
           ++ ALG      +  E  RY KV+
Sbjct: 352 MITALGTGIGEDFTLEKARYHKVV 375


>gi|321401424|gb|ADW83174.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
          Length = 371

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 148/375 (39%), Positives = 208/375 (55%), Gaps = 10/375 (2%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA-RQNTIFSQKFSRGIPLSPLEKKE 197
           AGGKFD  +Y++SGGLHGVG+SVVNALS+ L  TV      I+ Q++ +G  L P+++  
Sbjct: 2   AGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGKIYEQEYEKGKALYPVKQIG 61

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +    RGT +TF PDP IF     +    L    +  ++L+  +   ++  +E  +K G 
Sbjct: 62  ETTK-RGTIVTFYPDPSIFTQTIEYSYDTLSARMRELSFLNKGITITFTDKRE-KDKDGN 119

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
              E F+   GLK Y++    NR      I    +         VE A+ +       I 
Sbjct: 120 FVSEIFHSTEGLKEYIRYLDGNRE---PIIAHVISMDNDKGEIPVEVALIYNTSYTENIF 176

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFI 374
           SY N I T EGGTH  G R  LTR +KKYA+ +    K    I  DD       I+SV +
Sbjct: 177 SYVNNINTHEGGTHLQGFRTGLTRSLKKYADSSGMLDKLKFEISGDDFREGLTAIISVKV 236

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP+F GQTKTKL + +    V  A+ D  ++YL +NP +A  +++ VI  ++ R   +K
Sbjct: 237 AEPQFEGQTKTKLGNREVVSPVSQAVGDMIENYLEENPNDARIIVQKVILAAQARHAAKK 296

Query: 435 QREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            RE+  RKT +    LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLR
Sbjct: 297 AREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVFLVEGDSAGGTAKQGRDRAFQAILPLR 356

Query: 494 GKILNVASAGSEKIR 508
           GKILNV  A   K+ 
Sbjct: 357 GKILNVEKAMHHKVF 371


>gi|187471795|gb|ACD11208.1| DNA gyrase B subunit [Nocardia sp. W8988]
          Length = 415

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 130/421 (30%), Positives = 213/421 (50%), Gaps = 33/421 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS  +   + R    +SQ++    P   ++   +  ++ G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSRMVTEIDRDGFHWSQEYKDAKPGKLVK--GEPTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T   F  DP +F     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTQRFWADPDVFETTT-YNFETISRRLQEMAFLNKGLTITLTDERVSEAEVTDEVVSETA 117

Query: 250 ---EIAEKYGIP-----EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
              +  E    P     +   +++PGGL+ +++     +  I + + +  ++  G     
Sbjct: 118 EAPKHDEGTATPPEPKVKTRTYHYPGGLEDFVKHINRTKQAIHNTVVSFTSKGTGH---E 174

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SII 358
           +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++ 
Sbjct: 175 LEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLT 234

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+      I+SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  +
Sbjct: 235 GDDIREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTI 294

Query: 419 LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           ++  +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGS
Sbjct: 295 VQKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGS 354

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  R+   QA+LPLRGKI+NV  A  +K+  N ++  ++ A G     ++    LRY K
Sbjct: 355 AKSGRDSMYQAILPLRGKIINVEKARIDKVLKNNEVQSIITAFGTGIHDEFDISKLRYHK 414

Query: 538 V 538
           +
Sbjct: 415 I 415


>gi|11078709|dbj|BAB17359.1| DNA gyrase subunit B [Pseudomonas aeruginosa]
          Length = 389

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 146/401 (36%), Positives = 222/401 (55%), Gaps = 18/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           ++TY++SGGLHGVG+SVVNALS EL +T+ R N ++ Q +  G+P  PL +  +  +  G
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSHELRLTIRRHNKVWEQVYHHGVPQFPLREVGET-DGSG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F+P P+ F +   F    L K  +  ++L+  V      ++         ++E F 
Sbjct: 60  TEVHFKPSPETFSNIH-FSWDILAKRIRELSFLNSGVGILLRDER-------TGKEELFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           + GGLK +++    N++ ++       + E+ G     VE A+ W +     +  + N I
Sbjct: 112 YEGGLKAFVEYLNTNKTAVNEVFHFNVQREEDGV---GVEVALQWNDSFNENLLCFTNNI 168

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  Y E     +        DD       I+SV + +P+F+
Sbjct: 169 PQRDGGTHLAGFRSALTRNLNNYIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFS 228

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    
Sbjct: 229 SQTKDKLVSSEVKTAVEQEMGKYFADFLLENPNEAKSVVGKMIDAARAREAARKAREMTR 288

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR  QA+LPL+GKILNV
Sbjct: 289 RKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILNV 348

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 349 EKARFDKMLSSQEVGTLITALGCGIGREEYNIDKLRYHNII 389


>gi|12644439|sp|Q44065|GYRB_ACIHA RecName: Full=DNA gyrase subunit B
 gi|4514419|dbj|BAA75408.1| DNA gyrase subunit B [Acinetobacter haemolyticus]
          Length = 388

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 140/400 (35%), Positives = 216/400 (54%), Gaps = 17/400 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L +T+ R      Q++  G P  PL    +  ++ G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSSKLQLTIHRAGQEHQQEYHHGDPQYPLRVIGET-DRTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F     F+   L +  +  ++L+  V+     ++   E         + 
Sbjct: 60  TIVRFWPSAETFSQTI-FNVDILARRLRELSFLNAGVRIVLRDERVNLENV-------YD 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   E ++ ++           G    +VE A+ W +     +  + N I 
Sbjct: 112 YEGGLSEFVRYINEGKTHLNEIFHFTTDADNGI---SVEVALQWNDSYQENVRCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  + +  DD       I+SV + +P+F+ 
Sbjct: 169 QKDGGTHLAGFRAALTRGLNSYMENENLLKKEKVVVSGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNR 440
           QTK KLVS + +  VE A+   F  YL++NP  A  +   +I+ +  R   RK      R
Sbjct: 229 QTKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV 
Sbjct: 289 KSALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY K+I
Sbjct: 349 RARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKII 388


>gi|190148854|gb|ACE63402.1| DNA gyrase B subunit [Pseudonocardia oroxyli]
          Length = 395

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 132/401 (32%), Positives = 205/401 (51%), Gaps = 20/401 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y +SGGLHGVG+SVVNALS  L V +      ++Q +   +P +  +       + GT I
Sbjct: 1   YAVSGGLHGVGVSVVNALSSALDVEIHVDGFTWNQHYDHSVPGTLHK--GAPSKRTGTSI 58

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKE----- 261
           TF  DP IF     +    + +  Q  A+L+  +      ++    E    P+ E     
Sbjct: 59  TFWADPTIFETTT-YSLETIQRRLQEMAFLNKGLTIVLRDERVSDTEVDDEPDAEGFVAK 117

Query: 262 ----EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
                F++PGGL+ ++     ++  I  +I +   E  G     VE A+ W       + 
Sbjct: 118 VKEQTFHYPGGLEDFVAFINRSKDAIHKKIISYTGEGPGHQ---VEVAMQWNSGYSESVY 174

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
           ++ NTI T EGGTHE G R ALT  + +YA   +    +  ++  +D+      I+SV +
Sbjct: 175 TFANTINTHEGGTHEEGFRSALTTTVNRYARDKKLLKDKDPALSGEDIREGLAAIVSVKV 234

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP+F GQTKTKL + + +  V+    +    +  +NP +A  ++   +  ++ RL  RK
Sbjct: 235 AEPQFEGQTKTKLGNTEVKSFVQKMSNEWLSDWFERNPADAKTIVTKAVSSAQARLAARK 294

Query: 435 QRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            RE V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LP+R
Sbjct: 295 ARELVRRKSAGDIGGLPGKLADCRSTDPSKSEVYIVEGDSAGGSAKSGRDSMYQAILPIR 354

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
           GKI+NV  A  +++  N ++  ++ ALG     ++    LR
Sbjct: 355 GKIINVEKARIDRVLKNTEVQSIITALGTGIHDEFDLSKLR 395


>gi|302746268|gb|ADL62724.1| GyrB [Morganella morganii subsp. sibonii]
          Length = 366

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 131/377 (34%), Positives = 201/377 (53%), Gaps = 15/377 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVN LS++L + + R   +  Q +  G P   L    +  +K GTR+ F
Sbjct: 1   VSGGLHGVGVSVVNPLSEKLELVIRRDGKVHEQIYRHGEPQDRLTVVGET-DKTGTRVRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P    F  +  F    L K  +  ++L+  V       ++  E       + F++ GG+
Sbjct: 60  WPSMDTFKGETEFQYDILAKRLRELSFLNSGVSIRLIDKRDGKE-------DHFHYEGGI 112

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K +++     ++ I + +F   TEK       VE ++ W +     +  + N I   +GG
Sbjct: 113 KAFVEYLSRAKTSIHNNVFYFSTEKDDI---GVEVSMQWNDSFQENVYCFTNNIPQRDGG 169

Query: 329 THESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R A+TR +  Y E      K  +S   DD     V ++SV + +P+F+ QTK K
Sbjct: 170 THLAGFRAAMTRTLNSYIEKEGLNKKSKVSTTGDDAREGLVAVISVKVPDPKFSSQTKDK 229

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIR 445
           LVS + +  VE  + +    YL +NP +   ++  +I+ +  R   R+ R    RK A+ 
Sbjct: 230 LVSSEVKTAVETLMNEKLSEYLDENPSDTKIIVGKIIDAARAREAARRAREMTRRKGALD 289

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +
Sbjct: 290 LAGLPGKLADCQERDPAFSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 349

Query: 506 KIRNNQQIMDLVQALGC 522
           K+  +Q++  L+ ALG 
Sbjct: 350 KMLASQEVATLITALGY 366


>gi|11078715|dbj|BAB17362.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 388

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 145/400 (36%), Positives = 218/400 (54%), Gaps = 17/400 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+EL +T+ R+  ++ Q +  G+P +PL    +  +  G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELMLTIRREGKVWEQLYRHGVPQAPLAPVGET-DTSG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+I F+P  + F +   F    L K  +  ++L+  V      ++   E       E F 
Sbjct: 60  TQIHFKPSAETFQNIH-FSWDILAKRLRELSFLNSGVGIVLRDERTAKE-------ELFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  ++     N++ ++           G     VE A+ W +     I  + N I 
Sbjct: 112 YEGGLSAFVAYLNTNKTPVNQVFHFNIQRDDGV---GVEVALQWNDSFNENILCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  Y E      K  I+   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLAGFRSALTRNLNSYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    R
Sbjct: 229 QTKDKLVSSEVKTAVEQEMGRHFADFLLENPSEAKAVVGKMIDAARAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR  QA+ PL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKTQAIFPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 349 KARFDKMISSQEVGTLITALGCGIGRDEYNIDKLRYHNII 388


>gi|19909549|dbj|BAB86970.1| DNA gyrase subunit B [Mycoplana dimorpha]
          Length = 390

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 145/399 (36%), Positives = 219/399 (54%), Gaps = 14/399 (3%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS  L + + R   I    F+ G+   PL       ++ GT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSVMLRLKIRRSGHIHEMSFTHGVADGPLRITGDCGDETGT 60

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            +TF P P+ F +   F+   L    +  A+L+  V+   +  +    +          +
Sbjct: 61  EVTFLPSPETFSNI-EFNYQTLEHRLRELAFLNSGVRILLTDRRHSDVRQDE-----MMY 114

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILT 324
            GGL+ ++      +  +  +    + E+ G    TVE A+ W +   E    + N I  
Sbjct: 115 DGGLEAFVHFLDRAKKPLVPKPIAIRGERDGI---TVEVAMWWNDSYHENVLCFTNNIPQ 171

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTR +  Y E +    K  +S+  DD       +LSV + +P+F+ Q
Sbjct: 172 RDGGTHLAGFRGALTRQVVSYGESSGILKKEKVSLTGDDCREGLTAVLSVKVPDPKFSSQ 231

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TK KLVS + +  VE+ + +   ++L ++P EA  L+  V+E +  R   RK RE   RK
Sbjct: 232 TKDKLVSSEVRPVVESLVNEALSNWLEEHPSEAKVLVGKVVEAAAAREAARKARELTRRK 291

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            A+    LPGKLADCS+     +E+F+VEGDSAGGSAKQ R+R NQA+LPLRGKILNV  
Sbjct: 292 GALDISSLPGKLADCSERDPAKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 351

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
           A  +K+ ++Q+I  L+ ALG    + ++  E LRY K+I
Sbjct: 352 ARFDKMLSSQEIGTLITALGTSIGKDEFNPEKLRYHKII 390


>gi|19912053|dbj|BAB88338.1| DNA gyrase subunit B [Cytophaga sp. I-762]
          Length = 391

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 142/395 (35%), Positives = 207/395 (52%), Gaps = 9/395 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+S VNALS  L  TV R   I+ Q++ RG  L P++   +     GT +TF
Sbjct: 1   VSGGLHGVGVSCVNALSSHLKATVYRDGKIWEQEYERGKTLYPVKSVGESSE-TGTIVTF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD  IF     +    L    +  +YL+  V    +  +   EK      E F+   GL
Sbjct: 60  VPDNTIFTQTTEYSYETLANRMRELSYLNKGVTITLTDKRRKDEKG-EFISETFHSDEGL 118

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGG 328
           K +++     R  +   + + + EK G     VE A+ +     E    Y N I T EGG
Sbjct: 119 KEFIKFLDGTREPLIQSVISMEGEKNGIP---VEVAMVYNTGYTENLHSYVNNINTHEGG 175

Query: 329 THESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH SG R  LT  +KKYA+ +    K    I  DD       ++SV + EP+F GQTKTK
Sbjct: 176 THLSGFRRGLTTTLKKYADNSGMLDKLKFEISGDDFREGLTAMVSVKVAEPQFEGQTKTK 235

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IR 445
           L + +    V  A+ +    YL +NP +A +++E V   ++ R    K RE+ ++   + 
Sbjct: 236 LGNREVTSAVSQAVSEMLTDYLEENPDDAKQIVEKVKLAAQARHAAAKAREMVQRKNPMS 295

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV  A   
Sbjct: 296 VGGLPGKLSDCSEQDPTKCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQH 355

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           K+  N++I ++  ALG    ++   + L  +K+  
Sbjct: 356 KVFENEEIKNIYTALGVTIGTEEDSKALNLDKLRY 390


>gi|110612683|gb|ABG78304.1| GyrB [uncultured bacterium]
          Length = 396

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 153/407 (37%), Positives = 226/407 (55%), Gaps = 17/407 (4%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD S+Y++SGGLHGVGISVVNALSD+L +T+ R   I  Q++  G PL+PL        +
Sbjct: 1   FDASSYKVSGGLHGVGISVVNALSDQLQLTIYRDGKIHRQEYHLGTPLAPLAVTG-ASAQ 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
           RGT I F+P  +IF     F      K  +  ++L+  V+     ++E        + + 
Sbjct: 60  RGTTIRFKPSAQIFT-HIQFTYEIFAKRLRELSFLNSGVRIELVDEREN-------KTDV 111

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           F   GGL+ +++    +R+ I   I   KT+       T+E ++ W +     +  Y N 
Sbjct: 112 FQHEGGLQAFVKYLNRSRTPIHDSIMWFKTQDGPV---TIEVSLQWNDSYQESMFCYTNN 168

Query: 322 ILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R ALTR +  Y   E +  K  ++   DD       ILSV + +P+F
Sbjct: 169 IPQKDGGTHLAGFRSALTRTLNDYIEKETSAKKDKLATTGDDAREGLTAILSVKLPDPKF 228

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EV 438
           + QTK KLVS + +  VE A+      +L+++P +A  ++  +IE +  R   RK R   
Sbjct: 229 SSQTKDKLVSSEVKGIVEAAVGAKLQDFLLEHPQDAKAIVAKIIEAARAREAARKAREMT 288

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +     +E+FIVEGDSAGGSAKQ R+R  QA+LPL+G+ILN
Sbjct: 289 WRKGALDVAGLPGKLADCQEKDPALSEIFIVEGDSAGGSAKQGRDRRTQAILPLKGRILN 348

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           V  +  +K+  + ++  L+ ALGC   +  +    LRY +VIIMTDA
Sbjct: 349 VEKSRFDKMLASAEVGTLITALGCGIGKDDFDIAKLRYHRVIIMTDA 395


>gi|325130728|gb|EGC53466.1| DNA topoisomerase 4 subunit B [Neisseria meningitidis OX99.30304]
          Length = 158

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 75/158 (47%), Positives = 98/158 (62%), Gaps = 8/158 (5%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ Y  SSI +L+GLEPV+ RPGMY   T   +  H+  EVIDNA DE + G+A  I+
Sbjct: 2   AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATAID 58

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154
           V +  +G L+V DNGRGIPV  HP+      +E++ T LHAGGKF+       Y  SGGL
Sbjct: 59  VQIHEDGSLSVRDNGRGIPVGLHPE-EGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
           HGVG+SV NALS  L VTV R+  I    F+ G  + P
Sbjct: 118 HGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEP 155


>gi|308153196|dbj|BAJ22187.1| DNA gyrase subunit B [Gordonia bronchialis]
          Length = 421

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 134/427 (31%), Positives = 209/427 (48%), Gaps = 37/427 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS ++ + +      + Q +    P    +   +   K G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTKVELEINYGGFHWEQTYDHAKPGPLEK--GEATRKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T + F PDP IF     F A  + +  Q  A+L+  +    +  +               
Sbjct: 59  TLVRFWPDPDIFETTV-FSAETVARRLQEMAFLNKGLTITLTDKRPRAVEAPPGDANGDD 117

Query: 250 ------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                       E  +    P+   +++P GL  Y++     +  I + +     +  G 
Sbjct: 118 SVADAAETVKTEEEKKADAKPKTRTYHYPDGLVDYIKHLNRTKQPIHNSVVGFTAKGTGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++ 
Sbjct: 178 ---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLLKEKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             +  DD+      ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP E
Sbjct: 235 GKLTGDDIREGLAAVISVKVGDPQFEGQTKTKLGNTEVKGFVQKTCNEHLAHWFESNPAE 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  +++  ++ ++ R+  RK RE V RKTA     LPGKLADC  N     E++IVEGDS
Sbjct: 295 AKIIIKKAVDSAQARVAARKARELVRRKTATDIGGLPGKLADCRSNDPSKCEVYIVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    L
Sbjct: 355 AGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDIAKL 414

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 415 RYHKIVL 421


>gi|306517915|emb|CBL53381.1| gyrase B subuni [Photobacterium ganghwense]
          Length = 386

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 143/395 (36%), Positives = 220/395 (55%), Gaps = 15/395 (3%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS+++ +T+ R   I  Q +  G P +PL       ++ GT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSEKVELTIHRGGHIHQQIYHHGEPQAPLAVIGD-SDRTGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           RI F P    F +   F    L K  +  ++L+  V      ++E        +++ F +
Sbjct: 60  RIRFWPSAATFSNI-EFHYEILAKRLRELSFLNSGVSIRLIDERE------ENKQDHFMY 112

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG+K +++    N++ I  ++F  +  ++      VE A+ W +     I  + N I  
Sbjct: 113 EGGIKAFVEHLNRNKTPIHPKVFHFEFTRED--GIGVEVAMQWNDGFQENIYCFTNNIPQ 170

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTR +  + E      K   +   DD       ++SV + +P+F+ Q
Sbjct: 171 RDGGTHLAGFRGALTRTLNLFMEKEGYSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRK 441
           TK KLVS + +  VE+A+ +    +L++NP +A  +   +IE S  R   RK R    RK
Sbjct: 231 TKDKLVSSEVKPAVESAMGEKLSEFLLENPSDAKTVCSKIIEASRAREAARKAREMTRRK 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  
Sbjct: 291 GALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRY 535
           A  +K+ ++Q++  L+ A+GC   R +Y  + LRY
Sbjct: 351 ARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRY 385


>gi|262135|gb|AAB24598.1| type II DNA topoisomerase homolog [African swine fever virus ASFV,
           Malawi LIL20/1, Peptide, 1191 aa]
          Length = 1191

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 104/641 (16%), Positives = 205/641 (31%), Gaps = 71/641 (11%)

Query: 72  KALHHLFSEVIDNAMDEVIAGYANL-----IEVSLDGNGFLTVVDNGRGIPVENHPKFP- 125
            AL  +F  +I NA D   A ++       I++S D  G     ++G GIP+  H +   
Sbjct: 52  PALLKIFDFLIVNATDHERACHSKTKKVTYIKISFDK-GVFACENDGPGIPIAKHEQASL 110

Query: 126 ----NKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFS 181
               +    E+      AG   + +   I GG +GVG+ +    S    +T A     + 
Sbjct: 111 IAKRDVYVPEVASCHFLAGTNINKAKDCIKGGTNGVGLKLAMVHSQWAILTTADGAQKYV 170

Query: 182 QKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA-------RLLKMTQSK 234
           Q  ++ + +         R    TRI   P  +  G                +       
Sbjct: 171 QHINQRLDIIEPPTITPSREM-FTRIELMPVYQELGYAQPLSETEQADLSAWIYLRACQC 229

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           A   G+  T +  DK       +   + +             L +    +      K + 
Sbjct: 230 AAYVGKGTTIYYNDKPCNTGSVMALAKMY------------TLLSAPNSTIHTTAIKADA 277

Query: 295 KGTHRGTVEWAIAWCEENPEITSYCNTI-LTDEGGTHESGLRVALTRGIKKYAELTQNKR 353
           K      ++ A     +  +         +    G H + L+  +   + K  + T   +
Sbjct: 278 KPYSLHPLQVAAVVSPKFKKFEHVSIINGVNCVKGEHVTFLKKTINEMVVKKFQQTIKDK 337

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
                  D   +   ++   I   E+ GQ K +L   +    V          +L     
Sbjct: 338 NRKTTLRDSCSNIFVVIVGSIPGIEWTGQRKDELSIAEN---VFKTHYSIPSSFLTNMTR 394

Query: 414 EATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
               +L   I + +   +    +        +K +    LA    +        +  G S
Sbjct: 395 SIVDILLQSISKKDNHKQVDVDKYTRANAGGKKAQDCMILAAEGDSALSLVRAGLTLGKS 454

Query: 474 -AGGSAKQARNRSNQAVLPLRGKILNVAS--------------AGSEKIRNNQQIMDLVQ 518
              G +          ++ L G I+N                   +E++ NN+ +  +VQ
Sbjct: 455 NPSGPS-----FDFCGMISLGGVIMNACKKVTNITTDSGETIMVRNEQLTNNKVLQGIVQ 509

Query: 519 ALGCRTRSQYREE----DLRYEKVIIMTDADVDGAH-IASLLLTFFYQEMYDLIEQKHLF 573
            LG      Y+ +     LRY  ++   D D+DG   I  LLL +F+     LI    + 
Sbjct: 510 VLGLDFNCHYKTQEERAKLRYGCIVACVDQDLDGCGKILGLLLAYFHLFWPQLIIHGFVK 569

Query: 574 LISPPLFRITQGTKS--VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631
            +  PL R+ +  K+  V  + E+      ++          +  +KG+      ++K  
Sbjct: 570 RLLTPLIRVYEKGKTVPVEFYYEQEFDAWAKKQTSLANH--TVKYYKGIAAHDTHEVKSM 627

Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672
               +        ++         ++  +   G +++ R +
Sbjct: 628 FKHFDNMVYT-FTLDD------SAKELFHIYFGGESELRKR 661


>gi|83017297|dbj|BAE53566.1| DNA gyrase B [Microbulbifer elongatus]
          Length = 389

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 146/401 (36%), Positives = 224/401 (55%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           ++TY++SGGLHGVG+SVVNALS+EL +T+ R   I  Q +  G+P +PL          G
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSEELKLTIRRGGKIHEQVYRHGVPDAPLTVVGD-SETTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F+P  + F +   F   +L K  +  ++L+  V+     ++         ++E + 
Sbjct: 60  TSVHFKPSAETFSNI-EFHFEQLAKRLRELSFLNSGVRIVLGDER-------TGKEEVYE 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL+ +++   +N++ I+  +      + G     VE A+ W +     I  Y N I 
Sbjct: 112 YEGGLRAFVEFLNQNKTPINKVLHFQNQREDGI---AVEVALQWNDSFQENIYCYTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  +S   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLAGFRAALTRGLNNYIEKEGVGKKDKVSTTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  +    + YL++NP EA  ++  +I+ +  R   RK R    R
Sbjct: 229 QTKDKLVSSEVKPAVEQEMGQSLNDYLLENPQEAKAVVGKMIDAARAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC Q     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQQKDPALSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++ ++  L+ ALGC   +S++  + LRY  +II
Sbjct: 349 KARFDKMLSSAEVGTLITALGCGIGKSEFNPDKLRYHSIII 389


>gi|18147161|dbj|BAB83061.1| DNA gyrase subunit B [Alcanivorax sp. Abu-1]
          Length = 386

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 144/394 (36%), Positives = 211/394 (53%), Gaps = 17/394 (4%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D++TY++SGGLHGVG+SVVNALS+EL +T+ R   +  Q +  G+P  PLE      +  
Sbjct: 1   DDNTYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYRHGVPAMPLEVVGNT-DSS 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT I FRP  + F +   F    L K  +  ++L+  V+     ++   E       + F
Sbjct: 60  GTAIHFRPSAETFTNI-KFHYDILAKRLRELSFLNSGVRIHLLDERNGEE-------DVF 111

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNT 321
            + GGL  ++    EN++ ++         E+ G     VE A+ W +   E    + N 
Sbjct: 112 EYEGGLSAFVSYLNENKTPLNQVFHFQFDREEDGI---AVEVAMQWNDSYQENLFCFTNN 168

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R ALTR +  Y E      K   +   DD       ++SV + +P+F
Sbjct: 169 IPQRDGGTHLAGFRAALTRTLNSYMEKEGLLKKEKANPTGDDAREGLTAVISVKVPDPKF 228

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REV 438
           + QTK KLVS + +  VE  + + F  YL++NP EA  +   +I+ +  R   RK     
Sbjct: 229 SSQTKDKLVSSEVKSAVEQTMGELFQDYLLENPQEAKAISSKIIDAARARDAARKAREMT 288

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC Q     +EL+IVEGDSAGGSAKQ R+R NQA+LPL+GKILN
Sbjct: 289 RRKGALDIAGLPGKLADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILN 348

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           V  A  +K+ ++Q++  L+ ALGC         +
Sbjct: 349 VEKARFDKMLSSQEVGTLITALGCGIGRDEYNVE 382


>gi|261343284|gb|ACX70143.1| DNA gyrase subunit B [Nocardia speluncae]
          Length = 415

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 135/421 (32%), Positives = 209/421 (49%), Gaps = 34/421 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L   +      +SQ +   +P      +       G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSSRLEAEIDTDGYHWSQTYKDAVPGQL--VQGDATKATG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T I F  DP IF     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTIRFWADPAIFETTT-YNFETISRRLQEMAFLNKGLTIVLTDERVSATEITDEVVSETA 117

Query: 250 ---EIAEKYGIPEKEE------FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
              +  E    P  E       +++PGGL+ +++     +  I + +F+   +  G    
Sbjct: 118 EAPKHDEGGEKPALEHKVKTRTYHYPGGLEDFVRHINRTKQPIHNSVFSFNGKGPGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SI 357
            +E A+ W       + ++ NTI T EGGTHE G R ALT  + +YA+  +  +    ++
Sbjct: 175 ELEVALQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNRYAKEKKLLKDKDGNL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  
Sbjct: 235 TGDDIREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRACNEHLAHWFEANPADAKT 294

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   +  ++ RL  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGG
Sbjct: 295 IVNKAVSSAQARLAARKARELVRRKSATDIGGLPGKLADCRSKDPSKSEIYIVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +K+  N ++  ++ A G     ++    LRY 
Sbjct: 355 SAKSGRDSMYQAILPLRGKIINVEKARIDKVLKNAEVQAIITAFGTGIHDEFDIAKLRYH 414

Query: 537 K 537
           K
Sbjct: 415 K 415


>gi|102144062|gb|ABF70172.1| GyrB [Aeromonas caviae]
          Length = 381

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 146/393 (37%), Positives = 220/393 (55%), Gaps = 17/393 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P P IF D   F    L K  +  ++L+  V      +++  E         F + GG+K
Sbjct: 60  PSPTIFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIK 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGT
Sbjct: 112 AFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KL
Sbjct: 169 HLVGFRTALTRTLNNYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
           VS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+  
Sbjct: 229 VSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDI 288

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 289 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 348

Query: 507 IRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
           + ++Q++  L+ ALGC   R +Y  + LRY  +
Sbjct: 349 MISSQEVGTLITALGCGIGRDEYNPDKLRYHNI 381


>gi|3985984|dbj|BAA34868.1| DNA gyrase subunit B protein [Nitrosomonas sp. AL212]
          Length = 389

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 138/401 (34%), Positives = 224/401 (55%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+ L +T+ R +     +F  G+P+ PLE   +     G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEWLKLTIRRDSKTHQIEFRMGVPVKPLEIIGESERH-G 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F    +IFG+   +      K  +  ++L+  VK      +   +       E+F 
Sbjct: 60  TEVHFLASKEIFGNI-EYHYDIFAKRLRELSFLNNGVKIHLIDQRSGKD-------EKFA 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           F GG++ +++    +++++   IF     K       VE ++ W +    ++  + N I 
Sbjct: 112 FTGGIRNFVEYINRSKTVLHPSIFYTTGVKDNI---AVEVSMQWNDSYTEQVLCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +GLR A+TR +  Y E  +   K  +    DD+      +LSV + EP+F+ 
Sbjct: 169 QKDGGTHLTGLRAAMTRTLNNYIEKNELAKKAKVETSGDDMREGLSCVLSVKLFEPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK KLVS + +  VE  +      YL++NP++A  +   +I+ +  R   RK RE+ R+
Sbjct: 229 QTKEKLVSSEVRPVVEEVVTQKLSEYLLENPLDAKTICNKIIDSARAREAARKARELTRR 288

Query: 442 TA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
              +  + LPGKLADC +      EL++VEGDSAGGSAKQ R+R  QA++PL+GKILNV 
Sbjct: 289 KGVLDSMGLPGKLADCQEKNPALCELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q+I+ L+ ALG    + +Y  + LRY ++II
Sbjct: 349 KARFDKLISSQEIISLITALGTGFGKDEYNPDKLRYHRIII 389


>gi|308153110|dbj|BAJ22144.1| DNA gyrase subunit B [Corynebacterium xerosis]
          Length = 429

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 135/435 (31%), Positives = 210/435 (48%), Gaps = 45/435 (10%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  +   + R   ++ Q F+  +P      + K     G
Sbjct: 1   SESYAVSGGLHGVGISVVNALSTRVEAEIVRDGHVWFQNFNTAVPEDL--VQGKKARGSG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE-------------- 250
           T I F PD  IF     F+   + +  +  A+L+  +       +               
Sbjct: 59  TTIRFWPDDSIFETV-EFNFDTIARRLREMAFLNKGLTITLVDKRVSEEELEAEALAEQA 117

Query: 251 ---------------------IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFT 289
                                   K    +K+ +++P GL+ Y+    +++++I   I  
Sbjct: 118 EKESAALVDEAEDAEGTTDVVEKAKKRREKKKVYHYPNGLQDYVDALNKSKNIIHPSIIG 177

Query: 290 GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
            +   +G     VE A+ W       + ++ NTI T EGGTHE G R ALT  + +YA  
Sbjct: 178 FEAGGEGH---EVEIAMQWNNGYSESVHTFANTINTIEGGTHEEGFRSALTSLMNRYARE 234

Query: 349 TQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
            +   ++  ++  +D       ++SV + +P+F GQTKTKL + + +  V+    +   H
Sbjct: 235 HKLLKEKENNLTGEDAREGLAAVISVRVADPQFEGQTKTKLGNTEIRGFVQRMANEHIGH 294

Query: 407 YLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTE 465
           ++  NP EA  ++   I  +  R   RK R+ V RK+A     LPGKLADC       +E
Sbjct: 295 WMEANPAEAKAIVNKAIASAHARQAARKARDLVRRKSATDLGGLPGKLADCRSKDPSKSE 354

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
           LFIVEGDSAGGSAK  RN   QA+LPLRGKILNV  +  ++   N ++  ++ ALG    
Sbjct: 355 LFIVEGDSAGGSAKSGRNSMFQAILPLRGKILNVEKSRLDRTLKNNEVQAIITALGTGIH 414

Query: 526 SQYREEDLRYEKVII 540
            ++    LRY K+++
Sbjct: 415 DEFDIAKLRYHKIVL 429


>gi|21238927|dbj|BAB96569.1| DNA gyrase subunit B [Streptosporangium violaceochromogenes]
          Length = 397

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 130/402 (32%), Positives = 209/402 (51%), Gaps = 11/402 (2%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVG+SVVNALS  L V +      + Q ++   P +PL K  +   + G
Sbjct: 1   SKSYAVSGGLHGVGVSVVNALSAALDVEIRCDGHHWRQSYAASKPTAPLAK-GEPTQETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T ITF  D  IF     ++   L +  Q  A+L+  +      ++          +  ++
Sbjct: 60  TSITFWADETIFETTT-WNFETLSRRFQEMAFLNKGLTITLRDERPAHAAGDEAPEVVYH 118

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++     +      +   +   +G    +VE A+ W       + ++ NTI 
Sbjct: 119 YEGGLSDFVKHLNSKKDAAHLSVIDFEEHGEGI---SVEIAMQWNNSYSESVYTFANTIN 175

Query: 324 TDEGGTHESGLRVALTRGIKKY---AELTQNKRAISIISDDLMISAVGILSVFIREPEFA 380
           T EGGTHE G R ALT  + +Y       +  +  ++  +D+      I+SV + +P+F 
Sbjct: 176 TAEGGTHEEGFRAALTSIVNRYAREQRFLKEGKDDNLAGEDIREGLTAIISVKLADPQFE 235

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A+  V+ A  D    +  +NP EA  ++   ++ +  R+  R+ R++ R
Sbjct: 236 GQTKTKLGNTEAKSFVQKACNDHLRDWFERNPGEAKDIINKSLQAARARIAARQARDLTR 295

Query: 441 KTAI--RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
           + ++      LPGKLADC  +     ELFIVEGDSAGGSAK  R+   QA+LP+RGKILN
Sbjct: 296 RKSLLESGSGLPGKLADCQWSDPEKCELFIVEGDSAGGSAKGGRDSKYQAILPIRGKILN 355

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           V  A  +K+  N ++  L+ A+G     ++    LRY K+I+
Sbjct: 356 VEKARIDKVLKNTEVQALITAMGTGVHDEFDIAKLRYHKLIL 397


>gi|225547694|gb|ACN93660.1| DNA gyrase subunit B [Nocardia amamiensis]
          Length = 414

 Score =  207 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 131/420 (31%), Positives = 210/420 (50%), Gaps = 33/420 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L   + R    +SQ +    P      + +   K G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLEADILRDGYHWSQIYKDAAPGKL--VQGEPTKKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK---------- 254
           T I F  DP++F     ++   + +  Q  A+L+  +    + ++    +          
Sbjct: 59  TTIRFWADPEVFETTT-YNFETVARRLQEMAFLNKGLTIKLTDERVSDSEVIDEVVSETA 117

Query: 255 -------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
                            +   +++PGGL+ +++     +  I + +     +  G     
Sbjct: 118 EAPKHAAENGGAAEHKVKTRTYHYPGGLEDFVRHINRTKQPIHNSVVGFTGKGTGH---E 174

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISII 358
           +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +   ++  ++ 
Sbjct: 175 LEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLT 234

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+      I+SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  +
Sbjct: 235 GDDIREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTI 294

Query: 419 LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           +   +  ++ R+  RK RE V RK+A     LPGKLADC     H +E++IVEGDSAGGS
Sbjct: 295 VNKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPHKSEIYIVEGDSAGGS 354

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY+K
Sbjct: 355 AKSGRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYQK 414


>gi|62085684|gb|AAX63234.1| DNA gyrase subunit B [Gordonia rubripertincta]
          Length = 428

 Score =  207 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 136/433 (31%), Positives = 212/433 (48%), Gaps = 38/433 (8%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+  Y +SGGLHGVGISVVNALS ++ + +      + Q +S   P    +     
Sbjct: 1   GGKFDSDAYAVSGGLHGVGISVVNALSTKVELEIENDGFHWEQTYSYAKPGPLEK--GDA 58

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG--- 256
             K GT + F PDP IF +   F+A  + +  Q  A+L+  +    +  +  A +     
Sbjct: 59  TRKTGTTVRFWPDPDIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEPPGDA 118

Query: 257 --------------------------IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
                                      P+   +++P GL  Y++     +  I + +   
Sbjct: 119 NGDEDAPATDVAEAVQTETEKAAAATKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGF 178

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             + +G     VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   
Sbjct: 179 SAKGEGH---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEK 235

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
           +   ++   +  DD+      ++S  + +P+F GQTKTKL + + +  V+    +   H+
Sbjct: 236 KLIKEKDGKLTGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHW 295

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
              NP EA  +++   + ++ R+  R+    V RKTA     LPGKLADC  N     E+
Sbjct: 296 FEANPAEAKIIVKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEV 355

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS 526
           +IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     
Sbjct: 356 YIVEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHD 415

Query: 527 QYREEDLRYEKVI 539
           ++    LRY K++
Sbjct: 416 EFDIAKLRYHKIV 428


>gi|119226174|dbj|BAF41066.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 416

 Score =  207 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 137/422 (32%), Positives = 215/422 (50%), Gaps = 32/422 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L   V      +SQ++    P      +     + G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSSRLEADVDFGGYHWSQEYKDAKPGKL--IQGDATKRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC---------DKEIAEKY 255
           T I F PDP+IF     F+   + +  Q  A+L+  +    +          D+ ++E  
Sbjct: 59  TTIRFWPDPEIFETTT-FNFETVARRLQEMAFLNKGLTITLTDQRVSQSDITDEVVSETA 117

Query: 256 GIPEKEE-------------FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
             P+ +              +++PGGL+ +++     +  I + I     +  G     V
Sbjct: 118 EAPKADTIGAPIEAKVKTRTYHYPGGLEDFVKHINRTKQSIHNSIVAFTGKGTGH---EV 174

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIIS 359
           E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++  
Sbjct: 175 EVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKDKDGNLTG 234

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD+      I+SV I +P+F GQTKTKL + + +  V+    +   H+   NP +A  ++
Sbjct: 235 DDIREGLTAIVSVKIADPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIV 294

Query: 420 EWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
           +  +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGSA
Sbjct: 295 QKAVSSAQARIAARKARELVRRKSATDLGGLPGKLADCRSKDPKLSEIYIVEGDSAGGSA 354

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538
           K  R+   QA+LP+RGKI+NV  A  +++  N ++  ++ A G     ++    LRY K+
Sbjct: 355 KSGRDSMYQAILPIRGKIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYHKI 414

Query: 539 II 540
           I+
Sbjct: 415 IL 416


>gi|269799070|gb|ACZ43813.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 336

 Score =  207 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 109/320 (34%), Positives = 177/320 (55%), Gaps = 15/320 (4%)

Query: 109 VVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDE 168
           V D+GRGIPV+ H +    S  E+ILT LHAGGKFD+++Y++SGGLHGVG+SVVNALS++
Sbjct: 1   VSDDGRGIPVDIHEE-EGVSAAEVILTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEK 59

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L +T+ R   I +Q +  G+P  P+ +   V +  GT + F P  + F +   F    L 
Sbjct: 60  LELTIFRHGKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFWPSHETFTNTL-FHYDILA 117

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           K  +  ++L+  V      ++E        + + F + GG+K ++     N++ I+ + F
Sbjct: 118 KRLRELSFLNSGVSIKLIDERED------GKSDHFVYEGGIKAFVDYLNVNKTPINKDAF 171

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
               E++     TVE A+ W +     I  + N I   +GGTH +G R ALTR +  Y E
Sbjct: 172 HFSVERED--GITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYME 229

Query: 348 ---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF 404
                +  ++ +   DD       ++SV + +P+F+ QTK KLVS + +  VE A+ +  
Sbjct: 230 KEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQAMGEKL 289

Query: 405 DHYLVQNPIEATKLLEWVIE 424
             YL++NP EA+ ++  +I+
Sbjct: 290 AEYLLENPKEASTVVTKIID 309


>gi|186920217|gb|ACC95397.1| DNA gyrase B subunit [Gordonia effusa]
          Length = 420

 Score =  207 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 135/426 (31%), Positives = 213/426 (50%), Gaps = 38/426 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  + +++      + Q +   +P    +       K G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRVELSIDYGGFHWDQTYHNAVPDPLEK--GAATRKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T ++F PD +IF     F+A  + +  Q  A+L+  +    + ++               
Sbjct: 59  TTVSFWPDSEIFET-TTFNAETVARRLQEMAFLNKGLTITLTDERLTDEAAEAEAEMGGT 117

Query: 250 -------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG 296
                        E A++    +   +++P GL  Y++     ++ I S +     +  G
Sbjct: 118 DGEQTAEAIANKEEKADRVAKIKTRTYHYPDGLVDYIKHLNRTKNAIHSSVVGFTGKGTG 177

Query: 297 THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKR 353
                VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++
Sbjct: 178 H---EVEIAMQWNNGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYAADKKLVKEK 234

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
              +  DD+      ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP 
Sbjct: 235 DGKLTGDDIREGLAAVISVKVGDPQFEGQTKTKLGNTEVKSFVQKMCNEHLAHWFESNPA 294

Query: 414 EATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
           EA  ++   ++ ++ R+  RK RE V RKTA     LPGKLADC  N     E++IVEGD
Sbjct: 295 EAKVIIRKAVDSAQARMAARKARELVRRKTATDIGGLPGKLADCRSNDPSKCEVYIVEGD 354

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           SAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++  E 
Sbjct: 355 SAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDIEK 414

Query: 533 LRYEKV 538
           LRY K+
Sbjct: 415 LRYHKI 420


>gi|211927065|dbj|BAG82785.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|308153074|dbj|BAJ22126.1| DNA gyrase subunit B [Lactobacillus plantarum]
          Length = 395

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 131/405 (32%), Positives = 204/405 (50%), Gaps = 19/405 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKR 203
              Y+ SGGLHGVG SVVNALS EL VT+ R    + + F  G  P+  LEKK K     
Sbjct: 1   QGGYKTSGGLHGVGASVVNALSSELTVTIVRDGYRYVEHFKDGGHPVGTLEKKGKTNKPT 60

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TF+PD  IF     ++   L +  +  A+L   VK   + ++E  ++  +     F
Sbjct: 61  GTTMTFKPDASIFTTTV-YNFQTLAERLRESAFLLKGVKITLTDERENQQQELV-----F 114

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTI 322
           ++  G+K ++    E++  +   +      K+G     VE A  + +   E   S+ N +
Sbjct: 115 HYEDGIKAFVSYLNEDKDTLGDIM-FFDGTKEGV---EVEVAAQYNDGYSENLLSFVNNV 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--E 378
            T +GGTHE G R A T+   +YA        +  ++   D+      ++S+ + E   +
Sbjct: 171 RTPDGGTHEVGFRSAWTKAFNEYARKVGLLKDKDKNLEGSDVREGLSAVISLRVPENLLQ 230

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
           F GQTK KL + +A+  V+N + +    +L++N   A  L+    +  + R   RK R+ 
Sbjct: 231 FEGQTKEKLGTPEARTIVDNIVSEQLQFFLMENGEFAQMLIRKSTKARQAREAARKARDE 290

Query: 439 NRKTAIRKLR---LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           +R    R  +   L GKL       A   ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK
Sbjct: 291 SRNGKRRHKQERLLSGKLTPAQSKNAKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGK 350

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +LN   A    I  N++I  ++  +G     ++  +   Y+K+II
Sbjct: 351 VLNTEKAKLADIVKNEEINTMIYTIGAGVGPEFDIKASNYDKIII 395


>gi|32364174|gb|AAP80235.1| GyrB [Gallibacterium genomosp. 1]
          Length = 386

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 149/397 (37%), Positives = 226/397 (56%), Gaps = 17/397 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALSD+L +T+ R+  +  Q +  G P +PL    +  +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSDKLQLTIRREGHVHEQFYCLGEPQAPLAVIGE-SDKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P P IF D   F    L K  +  ++L+  V       +           + F+
Sbjct: 60  TTVRFWPSPSIFSDT-EFQYEVLSKRLRELSFLNSGVSIRLIDLR-------TNRSDHFH 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG++ +++   +N++ I S+ F   TEK G     VE A+ W +   E    + N I 
Sbjct: 112 YEGGIQAFVEYLNKNKNPIHSKPFYLNTEKDGI---GVEVALQWNDGFQENLYCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R A+TR +  Y E      K  +++  DD     V I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLAGFRAAMTRTLNNYMEKEGYNKKSKVAMAGDDAREGLVAIVSVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE+A+ +    YL++NP +A  ++  +I+ +  R   RK R    R
Sbjct: 229 QTKDKLVSSEVKSVVESAVGERLQEYLLENPNDAKIIVGKIIDAARAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    L GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 289 KGALDLGGLRGKLADCQERDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYE 536
            A  +++ ++Q++  L+ ALGC   R +Y  + LRY 
Sbjct: 349 KARFDRMLSSQEVAALITALGCGIGRDEYNPDKLRYH 385


>gi|27530803|dbj|BAC54049.1| DNA gyrase subunit B [Nocardia globerula]
 gi|119226150|dbj|BAF41054.1| DNA gyrase subunit B [Nocardia farcinica]
 gi|211927077|dbj|BAG82791.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 418

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 129/424 (30%), Positives = 213/424 (50%), Gaps = 34/424 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  + V +      +SQ +    P   ++   +  ++ G
Sbjct: 1   SESYAVSGGLHGVGISVVNALSSRVEVEIDVDGYHWSQTYKEATPSKLVK--GEPTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK---------- 254
           T + F  DP+IF     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTVRFWADPEIFETTT-YNFETVARRLQEMAFLNKGLTITLTDERVSESDVTDEIVSETA 117

Query: 255 --------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                             +   +++PGGL+ +++     +  I + + +   +  G    
Sbjct: 118 EAPKHGEPTGEAASEHKVKTRTYHYPGGLEDFVRHINRTKQAIHNSVVSFTGKGTGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SI 357
            +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++
Sbjct: 175 ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  
Sbjct: 235 TGDDIREGLAAIVSVKVAEPQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKT 294

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           +++  +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGG
Sbjct: 295 IVQKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +K+  N ++  ++ A G     ++    LRY 
Sbjct: 355 SAKSGRDSMYQAILPLRGKIINVEKARIDKVLKNNEVQSIITAFGTGIHDEFDISKLRYH 414

Query: 537 KVII 540
           K+++
Sbjct: 415 KIVL 418


>gi|88824759|gb|ABD52425.1| gyrase B [Aeromonas hydrophila]
          Length = 383

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 148/395 (37%), Positives = 222/395 (56%), Gaps = 17/395 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P P IF D   F    L K  +  ++L+  V      +++  E         F + GG+K
Sbjct: 60  PSPTIFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIK 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGT
Sbjct: 112 AFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KL
Sbjct: 169 HLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
           VS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+  
Sbjct: 229 VSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDI 288

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 289 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 348

Query: 507 IRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
           + ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 349 MISSQEVGTLITALGCGIGRDEYNPDKLRYHNIII 383


>gi|88824781|gb|ABD52436.1| gyrase B [Staphylococcus aureus]
          Length = 398

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 138/406 (33%), Positives = 214/406 (52%), Gaps = 12/406 (2%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           F    Y +SGGLHGVG SVVNALS +L V V R  TI+ Q + +G+P   L++     +K
Sbjct: 1   FVGGGYXVSGGLHGVGSSVVNALSXDLEVYVHRNETIYHQAYXKGVPRFDLKEVG-TTDK 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT I F+ D +IF +   ++   L +  +  A+L+  ++     +++         ++ 
Sbjct: 60  TGTVIRFKADGEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEE----NVREDS 115

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           +++ GG+K+Y++   EN+  I  E       K       VE AI +       + +Y N 
Sbjct: 116 YHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDI---EVEIAIQYXSGYATNLLTYANN 172

Query: 322 ILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMISAVGILSVFIREPEF 379
           I T EGGTHE G + ALTR +  Y  +     +    +  +D       I+S+   +P+F
Sbjct: 173 IHTYEGGTHEDGFKRALTRVLNSYGLSSXIMKEDQDRLSGEDTREGMTAIISIKHGDPQF 232

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREV 438
            GQTKTKL + + ++ V+    + F+ +L +NP  A  ++E  ++        ++ +   
Sbjct: 233 EGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVT 292

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK+A+    LPGKLADCS       E+F+VEGDSAGGS K  R+   QA+LPLRGKILN
Sbjct: 293 RRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILN 352

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544
           V  A  ++I NN +I  ++ A G      +     RY K++IMTDA
Sbjct: 353 VXKARLDRILNNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDA 398


>gi|11078695|dbj|BAB17352.1| DNA gyrase subunit B [Pseudomonas fluorescens]
          Length = 388

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 144/400 (36%), Positives = 217/400 (54%), Gaps = 17/400 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P  P++         G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQEPMKIVGD-SESTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+I F+P    F +   F    L K  +  ++L+  V      ++   E       E F 
Sbjct: 60  TQIHFKPSADTFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL+ +++    N++ ++         + G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLRAFVEYLNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH  G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    R
Sbjct: 229 QTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 349 KARFDKMISSQEVGTLITALGCGIGRDEYNIDKLRYHNII 388


>gi|253741314|gb|ACT34976.1| DNA gyrase subunit B [Nocardia sp. W9237]
 gi|261343276|gb|ACX70139.1| DNA gyrase subunit B [Nocardia arthritidis]
          Length = 414

 Score =  207 bits (526), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 132/420 (31%), Positives = 207/420 (49%), Gaps = 33/420 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L   +      +SQ +   IP      + +   K G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSSRLEAEIDHDGYHWSQTYKDAIPGKL--IQGEPTKKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK---------- 254
           T I F  DP+IF     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTIRFWADPEIFETTT-YNFETVARRLQEMAFLNKGLTIKLTDERVSDSDVTDEVVSETA 117

Query: 255 -------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
                            +   +++PGGL+ +++     +  I + +     +  G     
Sbjct: 118 EAPKHAEEGTAPAEHKVKTRTYHYPGGLEDFVRHINRTKQPIHNSVVGFTGKGTGH---E 174

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISII 358
           +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +   ++  ++ 
Sbjct: 175 LEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKRLIKEKDGNLT 234

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+      I+SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  +
Sbjct: 235 GDDIREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTI 294

Query: 419 LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           +   +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGS
Sbjct: 295 VNKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGS 354

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  R+   QA+LPLRGKI+NV  A  +K+  N ++  ++ A G     ++    LRY K
Sbjct: 355 AKSGRDSMYQAILPLRGKIINVEKARIDKVLKNNEVQSIITAFGTGIHDEFDIGKLRYHK 414


>gi|33187347|gb|AAP97536.1| DNA gyrase subunit B [Campylobacter coli]
          Length = 368

 Score =  207 bits (526), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 143/381 (37%), Positives = 205/381 (53%), Gaps = 18/381 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS +L  TV R   I+ Q+FS G  +S  +   K +   GT I
Sbjct: 1   YKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFDIIGKSKK-TGTTI 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F PD  IF     FD   L K  +  AYL+ ++   +  ++       + + E F+F G
Sbjct: 60  EFWPDDTIFEVT-EFDYDILAKRFRELAYLNPKITINFKDNR-------VGKSESFHFEG 111

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDE 326
           G+  ++    +  +L     F+   E        VE A+ + +   E   S+ N I T +
Sbjct: 112 GISQFVSDLNKKEALTKPIFFSVDEED-----VNVEVALLYNDTYSENLLSFVNNIKTPD 166

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTHE+G R+ LTR I  Y E      ++   I  DD+    + ++SV + EP+F GQTK
Sbjct: 167 GGTHEAGFRMGLTRVISNYIEANASAREKDSKITGDDVREGLIAVVSVKVPEPQFEGQTK 226

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
            KL S   +  V  A  +    Y  +NPIEA  ++   +  +  R   +K RE   +K +
Sbjct: 227 GKLGSSYVRPIVSKASFEYLSKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKES 286

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC       +E+++VEGDSAGGSAKQ R RS QA+LPLRGKILNV  A 
Sbjct: 287 LSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKAR 346

Query: 504 SEKIRNNQQIMDLVQALGCRT 524
            +KI  ++QI +++ A GC  
Sbjct: 347 LDKILKSEQIQNMITAFGCGI 367


>gi|164608596|gb|ABY62589.1| DNA gyrase beta subunit [Aliivibrio logei]
          Length = 388

 Score =  207 bits (526), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 147/397 (37%), Positives = 219/397 (55%), Gaps = 14/397 (3%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS+++ +T+ R+  +F Q +  G+P +PL       +  GT+I
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKVELTINRRGEVFQQIYCHGVPQAPLAVIG-TTDTTGTKI 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F    L K  +  ++L+  V       +E        + + F F G
Sbjct: 60  RFWPSDQTFANI-EFVYDILAKRLRELSFLNSGVSIRLQDMRE------EDKSDHFMFEG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K ++     N++ +  +IF   +E+K      VE A+ W +     I  Y N I   +
Sbjct: 113 GIKAFVTHLNRNKTPVHQKIFYFDSERK-EDGIVVEVAMQWNDSYQENIFCYTNNIPQRD 171

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GG H SG R ALTR +  + +      K   S   DD       ++SV + +P+F+ QTK
Sbjct: 172 GGAHLSGFRSALTRTLNSFMDKEGFSKKAKSSASGDDAREGLTAVVSVKVPDPKFSSQTK 231

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTA 443
            KLVS + +  VE+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK A
Sbjct: 232 DKLVSSEVKSAVESAMNEKLAEFLAENPGEAKMVCSKIIDAARAREAARKAREMTRRKGA 291

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A 
Sbjct: 292 LDIAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 351

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            +K+ ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 352 FDKMISSQEVGTLITALGCGIGRDEYNPDKLRYHNII 388


>gi|261343278|gb|ACX70140.1| DNA gyrase subunit B [Nocardia carnea]
          Length = 415

 Score =  207 bits (526), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 135/421 (32%), Positives = 208/421 (49%), Gaps = 34/421 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L   V      +SQ +   +P      + +     G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSSRLEAEVDTDGYHWSQTYKDAVPGPL--VQGEPTKATG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T I F  DP IF     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTIRFWADPAIFETTT-YNFETISRRLQEMAFLNKGLTIVLTDERVSATEVTDEMVSETA 117

Query: 250 ---EIAEKYGIPEKEE------FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
              +  E    P  E       +++PGGL+ +++     +  I +   +   +  G    
Sbjct: 118 EAPKHDEGGEKPAVEHKVKARTYHYPGGLEDFVRHINRTKQPIHNSAVSFNGKGPGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SI 357
            +E A+ W       + ++ NTI T EGGTHE G R ALT  + +YA+  +  +    ++
Sbjct: 175 ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNRYAKEKKLLKDKDGNL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  
Sbjct: 235 TGDDIREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRACNEHLAHWFEANPADAKT 294

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   +  ++ RL  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGG
Sbjct: 295 IVNKAVSSAQARLAARKARELVRRKSATDIGGLPGKLADCRSKDPSKSEIYIVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +K+  N ++  ++ A G     ++    LRY 
Sbjct: 355 SAKSGRDSMYQAILPLRGKIINVEKARIDKVLKNAEVQAIITAFGTGIHDEFDIAKLRYH 414

Query: 537 K 537
           K
Sbjct: 415 K 415


>gi|29652986|gb|AAO87462.1| DNA gyrase B [Listeria monocytogenes]
          Length = 194

 Score =  207 bits (526), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 82/183 (44%), Positives = 113/183 (61%), Gaps = 2/183 (1%)

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 14  RKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILN 73

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 74  VEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTL 133

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+K
Sbjct: 134 FYRYMRPLLDAGYIYIAQPPLYQIKHGKQVEYVYSDGQLEDYLASL--DGDTKYSIQRYK 191

Query: 619 GLG 621
           GLG
Sbjct: 192 GLG 194


>gi|297614600|gb|ADI48602.1| DNA gyrase subunit B [Shewanella haliotis]
          Length = 383

 Score =  207 bits (526), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 141/394 (35%), Positives = 219/394 (55%), Gaps = 16/394 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS++L +T+ R   ++ Q +  G P  P+++  +     GT I F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLQLTIRRDGKVYEQFYKHGEPQEPIKEIGEATK-TGTEIRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F D   F    L K  +  ++L+  V      +++  +       E F++ GG+
Sbjct: 60  WPSHETFTDT-EFHYELLAKRIRELSFLNSGVGIRLIDERDNKD-------EFFHYEGGI 111

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K +++    N++ ++ ++F    E++     TVE A+ W +     I  + N I   +GG
Sbjct: 112 KAFVEYLNRNKTPVNKDVFHFSQERED--GITVEVAMQWNDGFQESIFCFTNNIPQRDGG 169

Query: 329 THESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  Y E      K   +   DD       ++SV + +P+F+ QTK K
Sbjct: 170 THLAGFRAALTRNLNNYMENEGFNKKGKTNATGDDAREGLTAVVSVKVPDPKFSSQTKDK 229

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIR 445
           LVS + +  VE  + +  + YL++NP +A  ++  +I+ +  R   RK R    RK A+ 
Sbjct: 230 LVSSEVKGAVEQTMAEKLNDYLLENPADAKMIVGKIIDAARAREAARKAREMTRRKGALD 289

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +
Sbjct: 290 LGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 349

Query: 506 KIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
           K+ ++Q++  L+ ALGC   R +Y  E  RY  +
Sbjct: 350 KMLSSQEVATLITALGCGIGRDEYDPEKTRYHYI 383


>gi|29652825|gb|AAO87382.1| DNA gyrase B [Listeria monocytogenes]
          Length = 189

 Score =  207 bits (526), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 83/191 (43%), Positives = 116/191 (60%), Gaps = 2/191 (1%)

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +R +    + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+L
Sbjct: 1   AKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAIL 60

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           P+RGKILNV  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAH
Sbjct: 61  PIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAH 120

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           I +LLLT FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  
Sbjct: 121 IRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDT 178

Query: 611 KIEISRFKGLG 621
           K  I R+KGLG
Sbjct: 179 KYSIQRYKGLG 189


>gi|29652968|gb|AAO87453.1| DNA gyrase B [Listeria monocytogenes]
          Length = 192

 Score =  207 bits (526), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 83/191 (43%), Positives = 116/191 (60%), Gaps = 2/191 (1%)

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +R +    + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+L
Sbjct: 4   AKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAIL 63

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           P+RGKILNV  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAH
Sbjct: 64  PIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAH 123

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           I +LLLT FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  
Sbjct: 124 IRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDT 181

Query: 611 KIEISRFKGLG 621
           K  I R+KGLG
Sbjct: 182 KYSIQRYKGLG 192


>gi|29652964|gb|AAO87451.1| DNA gyrase B [Listeria monocytogenes]
          Length = 190

 Score =  207 bits (526), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 83/191 (43%), Positives = 116/191 (60%), Gaps = 2/191 (1%)

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +R +    + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+L
Sbjct: 2   AKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAIL 61

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           P+RGKILNV  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAH
Sbjct: 62  PIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAH 121

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           I +LLLT FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  
Sbjct: 122 IRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDT 179

Query: 611 KIEISRFKGLG 621
           K  I R+KGLG
Sbjct: 180 KYSIQRYKGLG 190


>gi|29652958|gb|AAO87448.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652984|gb|AAO87461.1| DNA gyrase B [Listeria monocytogenes]
          Length = 191

 Score =  207 bits (526), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 83/191 (43%), Positives = 116/191 (60%), Gaps = 2/191 (1%)

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +R +    + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+L
Sbjct: 3   AKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAIL 62

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           P+RGKILNV  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAH
Sbjct: 63  PIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAH 122

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           I +LLLT FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  
Sbjct: 123 IRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDT 180

Query: 611 KIEISRFKGLG 621
           K  I R+KGLG
Sbjct: 181 KYSIQRYKGLG 191


>gi|300675588|gb|ADK26456.1| DNA gyrase subunit B [Gordonia bronchialis]
 gi|300675590|gb|ADK26457.1| DNA gyrase subunit B [Gordonia bronchialis]
          Length = 419

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 134/425 (31%), Positives = 207/425 (48%), Gaps = 37/425 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS ++ + +      + Q +    P    +   +   K G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTKVELEINYGGFHWEQTYDHAKPGPLEK--GEATRKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T + F PDP IF     F A  + +  Q  A+L+  +    +  +               
Sbjct: 59  TLVRFWPDPDIFETTV-FSAETVARRLQEMAFLNKGLTITLTDKRPRAVEAPPGDANGDD 117

Query: 250 ------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                       E  +    P+   +++P GL  Y++     +  I + +     +  G 
Sbjct: 118 SVADAAETVKTEEEKKADAKPKTRTYHYPDGLVDYIKHLNRTKQPIHNSVVGFTAKGTGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++ 
Sbjct: 178 ---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLLKEKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             +  DD+      ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP E
Sbjct: 235 GKLTGDDIREGLAAVISVKVGDPQFEGQTKTKLGNTEVKGFVQKTCNEHLAHWFESNPAE 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  +++  ++ ++ R+  RK RE V RKTA     LPGKLADC  N     E++IVEGDS
Sbjct: 295 AKIIIKKAVDSAQARVAARKARELVRRKTATDIGGLPGKLADCRSNDPSKCEVYIVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    L
Sbjct: 355 AGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDIAKL 414

Query: 534 RYEKV 538
           RY K+
Sbjct: 415 RYHKI 419


>gi|19912125|dbj|BAB88374.1| DNA gyrase subunit B [Cytophaga sp. I-482]
          Length = 391

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 149/396 (37%), Positives = 223/396 (56%), Gaps = 11/396 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVA-RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           +SG LHGVG+S VNALS ++ VTV  +   I+ Q + +G P +P+    +  +K GT + 
Sbjct: 1   VSGSLHGVGVSCVNALSKDMKVTVHSKDGKIYEQSYKKGSPQAPVAPVGET-DKTGTTVW 59

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F PD +IF     +   R+    +  A+L+  +       +++ E+   P  E FY  GG
Sbjct: 60  FMPDDEIFT-HHEYVWDRVANRLRELAFLNAGITIILEDLRDVDEQG-NPLSETFYSEGG 117

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEG 327
           +K +++   +++  +  E    + EK       V+ A+++     E   SY N I T EG
Sbjct: 118 IKEFVEYLDDSKEKLIDEAVYIEGEKANIP---VQVAMSYNTSFSENVVSYVNNINTHEG 174

Query: 328 GTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH SG R ALTR +K YA+ +    K  + I  DD       ++SV + EP+F GQTKT
Sbjct: 175 GTHVSGFRRALTRTLKNYADKSGLLDKVKVDISGDDFREGLTAVISVKVAEPQFEGQTKT 234

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-I 444
           KL + DA   V++A+ D  + YL +NP  A ++++ VI  ++ R   RK RE+ ++   +
Sbjct: 235 KLGNSDAVGAVDSAVSDMLNTYLEENPRSAKQIVQKVILAAQARHAARKAREMVQRKNVM 294

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADCS   A  +EL++VEGDSAGGSAKQ R R  QA+LPLRGKILNV  A  
Sbjct: 295 SSTSLPGKLADCSSKDATISELYLVEGDSAGGSAKQGREREYQAILPLRGKILNVEKAQE 354

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            KI +N++I +++ A+G R      E+ L  EK+  
Sbjct: 355 HKIYDNEEIKNMITAMGVRFGKDGDEKALDMEKLRY 390


>gi|25990065|gb|AAN74972.1| DNA gyrase subunit B [Mesoplasma lactucae ATCC 49193]
          Length = 391

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 141/401 (35%), Positives = 212/401 (52%), Gaps = 15/401 (3%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y+ISGGLHGVG SVVNALS  + V V +   I+ Q FS G       +     +  GTR
Sbjct: 1   SYKISGGLHGVGASVVNALSLYVDVEVKKNGNIYHQVFSEGGTKETEMEIIGKTDDHGTR 60

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F+PDP+IF +   FD   +    +  AYL+  +    +  +       I +   ++FP
Sbjct: 61  VLFKPDPEIFKETVDFDYDTIRNKVKQLAYLNKGITIQLTDQR-------IDKTVTYHFP 113

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
            G+  Y++     +  I+  +F          +  VE A+ W  E   +  S+ N I T 
Sbjct: 114 NGIVDYVKETNTGKPAINQTVFYADG---IVEKIEVEIAVQWNAEYNEDSVSFVNNINTR 170

Query: 326 EGGTHESGLRVALTRGIKKY---AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
           +GG HE G + A+ R I +Y    ++ +NK       DD+      ++S+   +P++ GQ
Sbjct: 171 DGGMHEDGFKQAMVRIINRYAAEKDINKNKTPQRYNWDDIKEGMTSVISIKHTDPQYEGQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRK 441
           TKTKL + DA+  V+  + + F+ YL  NP +A  +++ +    + R   ++ RE   RK
Sbjct: 231 TKTKLANPDAKIAVDAVVGENFESYLWNNPEDAAAIMDKIQTSQKSRFAAQRAREDTRRK 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           TA+    LPGKLADC+       EL+IVEGDSAGGSAKQ RN   QA+LPLRGK+LNV  
Sbjct: 291 TALDGFSLPGKLADCASKDPEFAELYIVEGDSAGGSAKQGRNSKYQAILPLRGKVLNVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
               K   NQ+I  ++ A+G   R  +    +RY K++IMT
Sbjct: 351 VQPAKAFTNQEIKTMITAIGAGVREDFDISKIRYGKIVIMT 391


>gi|126035356|gb|ABN72431.1| gyrase B subunit [Vibrio cholerae]
          Length = 381

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 138/388 (35%), Positives = 213/388 (54%), Gaps = 14/388 (3%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS+++ +T+ R   I SQ +  G+P +PL    +   + GT + 
Sbjct: 1   KVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGET-ERTGTTVR 59

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F P  + F +   F    L K  +  ++L+  V    + ++E  +K      + F + GG
Sbjct: 60  FWPSAQTFTNI-EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEGG 112

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           ++ ++     N++ I  ++F    E++     +VE A+ W +     I  + N I   +G
Sbjct: 113 IQAFVTHLNRNKTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDG 170

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH +G R ALTR +  Y +      K   +   DD       ++SV + +P+F+ QTK 
Sbjct: 171 GTHLAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKD 230

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAI 444
           KLVS + +  VE+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK A+
Sbjct: 231 KLVSSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGAL 290

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  
Sbjct: 291 DLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARF 350

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREED 532
           +K+ ++Q++  L+ ALGC         D
Sbjct: 351 DKMLSSQEVATLITALGCGIGRDEYNPD 378


>gi|259018098|gb|ACV89641.1| DNA gyrase subunit B [Nocardia brevicatena]
          Length = 415

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 132/421 (31%), Positives = 209/421 (49%), Gaps = 34/421 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L   +      +SQ +    P      + +   + G
Sbjct: 1   SESYAVSGGLHGVGISVVNALSTRLEAEIKHDGYHWSQTYKDAAPGKL--VQGEPTRETG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T I F PDP++F     F+   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTIRFWPDPEVFETTT-FNFETVARRLQEMAFLNKGLTIVLTDERVSEAEITDDVVSETA 117

Query: 250 ---------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                    E        +   +++PGGL+ +++     ++ I + +     +  G    
Sbjct: 118 EVPKHAENGEQQPAEPKVKTRTYHYPGGLEEFVRHINRTKTPIHNSVVGFTGKGTGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SI 357
            +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++
Sbjct: 175 ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLLKEKDGNL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  
Sbjct: 235 TGDDIREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKT 294

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           +++  +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGG
Sbjct: 295 IVQKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +K+  N ++  ++ A G     ++    LRY 
Sbjct: 355 SAKSGRDSMYQAILPLRGKIINVEKARIDKVLKNNEVQAIITAFGTGIHDEFDIGKLRYH 414

Query: 537 K 537
           K
Sbjct: 415 K 415


>gi|259018182|gb|ACV89683.1| DNA gyrase subunit B [Nocardia blacklockiae]
          Length = 411

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 128/417 (30%), Positives = 209/417 (50%), Gaps = 30/417 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS  +   + R    +SQ++    P   ++   +   + G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTRMVTEIDRDGFHWSQEYKDSKPGKLVK--GEPTKRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T   F  DP IF     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTQRFWADPAIFETTT-YNFETIARRLQEMAFLNKGLTITLTDERVSDAEITDEVVSDTA 117

Query: 250 -----EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
                E        +   +++PGGL  +++    ++  I + + +   +  G     +E 
Sbjct: 118 EAPKAEAEPVEHKVKTRTYHYPGGLADFVKHINRSKQPIHNTVVSFTGKGTGH---ELEV 174

Query: 305 AIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDD 361
           A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++  DD
Sbjct: 175 AMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLIKDKDGNLTGDD 234

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
           +      I+SV + +P+F GQTKTKL + + +  V+    +   H+L  NP +A  +++ 
Sbjct: 235 IREGLAAIVSVKVSDPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWLEANPADAKTIVQK 294

Query: 422 VIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
            +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGSAK 
Sbjct: 295 AVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPRLSEIYIVEGDSAGGSAKS 354

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
            R+   QA+LP+RGKI+NV  +  +K+  N ++  ++ A G     ++    LRY K
Sbjct: 355 GRDSMYQAILPIRGKIINVEKSRIDKVLKNNEVQSIITAFGTGIHDEFDISKLRYHK 411


>gi|308152529|dbj|BAJ22243.1| DNA gyrase subunit B [Mycobacterium fallax]
          Length = 419

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 134/424 (31%), Positives = 213/424 (50%), Gaps = 35/424 (8%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y++SGGLHGVG+SVVNALS  L   + +    + Q ++R +P +   ++ +   K G+
Sbjct: 2   GAYQVSGGLHGVGVSVVNALSTRLEADICKDGHEWFQVYNRSVPGTL--RQGEKTTKTGS 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK----------- 254
            I F  DP IF     +D   + +  Q  A+L+  +    + ++   ++           
Sbjct: 60  TIRFWADPDIFETTV-YDFETIARRLQEMAFLNKGLTIELTDERVTPDEVVDEVVSDTAE 118

Query: 255 --------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                             +   F++PGGL  Y++     +S I   I   + +  G    
Sbjct: 119 APKTAEQQEAEKSAPHKVKHRVFHYPGGLVDYVKHINRTKSPIQQSIIDFEGKGTGH--- 175

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISI 357
            VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +     +  ++
Sbjct: 176 EVEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNL 235

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP EA  
Sbjct: 236 SGDDIREGLAAVISVKVSDPQFEGQTKTKLGNTEVKSFVQKTCNEQLTHWFEANPAEAKT 295

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   +  ++ RL  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGG
Sbjct: 296 VVNKAVSSAQARLAARKARELVRRKSATDLGGLPGKLADCRSTDPKRSELYVVEGDSAGG 355

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  +  +++  N ++  ++ ALG     ++  E LRY 
Sbjct: 356 SAKSGRDSMFQAILPLRGKIINVEKSRIDRVLKNTEVQAIITALGTGIHDEFDIEKLRYH 415

Query: 537 KVII 540
           K+++
Sbjct: 416 KIVL 419


>gi|32306474|gb|AAP78925.1| DNA gyrase subunit B [Buchnera aphidicola]
          Length = 375

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 139/386 (36%), Positives = 221/386 (57%), Gaps = 15/386 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKFDNS+Y+ISGGLHGVGISVVNALS++L + + +    + Q +  G P  PL    
Sbjct: 1   HAGGKFDNSSYKISGGLHGVGISVVNALSEKLELIIYKNKKKYQQIYRNGKPQYPLSIIG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           K  N  GT I F P  K F +K  F    L K  +  ++L+  +      ++   +    
Sbjct: 61  K-SNITGTYIRFWPSYKTFKNKTIFQYEILSKRLRELSFLNSNIAIYLYDNRTNIKN--- 116

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEIT 316
                +++ GG+K +++   + +  I S IF  K++K+ T    +E A+ W +     I 
Sbjct: 117 ----HYHYKGGIKAFVKFLNQKKIAIHSHIFYFKSKKEET---ELEIAMQWTDSHQENIL 169

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFI 374
            + N I   +GGTH SG R  +TR +  + E      K  +SI  +D+      ++S+ I
Sbjct: 170 CFTNNIPQKDGGTHLSGFRSGMTRTLNLHIEKEGYNKKNKVSITGEDIREGLTAVISIKI 229

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            +P+F+ QTK KLVS + +  +E+ + +    +L++NP +A  +++ +I  ++ R   R+
Sbjct: 230 PDPKFSSQTKDKLVSSEVRSIIESLINENLIEFLLENPNDAKFIIQKIINSTKIREAARR 289

Query: 435 QREVNRKTAIRKLRL-PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            RE+N++  I  L   PGKL+DC +N    +E+++VEGDSAGGSAKQ RNR  QA+LPL+
Sbjct: 290 AREINKRKGISDLGTLPGKLSDCQENDPKLSEIYLVEGDSAGGSAKQGRNRKYQAILPLK 349

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQA 519
           GKILNV  +  +K+  +Q++  L+ A
Sbjct: 350 GKILNVEKSKFDKMLLSQEVSSLITA 375


>gi|259018124|gb|ACV89654.1| DNA gyrase subunit B [Nocardia pseudobrasiliensis]
          Length = 414

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 136/420 (32%), Positives = 213/420 (50%), Gaps = 32/420 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L   V      +SQ++    P      +     + G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSSRLEADVDFGGYHWSQEYKDAKPGKL--IQGDATKRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC---------DKEIAEKY 255
           T I F PDP+IF     F+   + +  Q  A+L+  +    +          D+ ++E  
Sbjct: 59  TTIRFWPDPEIFETTT-FNFETVARRLQEMAFLNKGLTITLTDQRVSQSDITDEVVSETA 117

Query: 256 GIPEKEE-------------FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
             P+ +              +++PGGL+ +++     +  I + I     +  G     V
Sbjct: 118 EAPKADTIGAPIEAKVKTRTYHYPGGLEDFVKHINRTKQSIHNSIVAFTGKGTGH---EV 174

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIIS 359
           E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++  
Sbjct: 175 EVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKDKDGNLTG 234

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD+      I+SV I +P+F GQTKTKL + + +  V+    +   H+   NP +A  ++
Sbjct: 235 DDIREGLTAIVSVKIADPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIV 294

Query: 420 EWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
           +  +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGSA
Sbjct: 295 QKAVSSAQARIAARKARELVRRKSATDLGGLPGKLADCRSKDPKLSEIYIVEGDSAGGSA 354

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538
           K  R+   QA+LP+RGKI+NV  A  +++  N ++  ++ A G     ++    LRY K+
Sbjct: 355 KSGRDSMYQAILPIRGKIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYHKI 414


>gi|259018154|gb|ACV89669.1| DNA gyrase subunit B [Nocardia gamkensis]
          Length = 414

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 131/420 (31%), Positives = 207/420 (49%), Gaps = 33/420 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L   +      +SQ +   +P      + +   K G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSSRLEAEIDHDGYHWSQTYKDAVPGKL--IQGEPTKKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK---------- 254
           T I F  DP+IF     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTIRFWADPEIFETTT-YNFETVARRLQEMAFLNKGLTIKLTDERVSDSDVTDEVVSETA 117

Query: 255 -------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
                            +   +++PGGL+ +++     +  I + +     +  G     
Sbjct: 118 EAPKHAEEGTAPAEHKVKTRTYHYPGGLEDFVRHINRTKQPIHNSVVGFTGKGTGH---E 174

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISII 358
           +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +   ++  ++ 
Sbjct: 175 LEVAMQWNSGYSESVHTFPNTINTHEGGTHEEGFRAALTTVVNKYAKDKRLIKEKDGNLT 234

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+      I+SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  +
Sbjct: 235 GDDIREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTI 294

Query: 419 LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           +   +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGS
Sbjct: 295 VNKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGS 354

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  R+   QA+LPLRGKI+NV  A  +K+  N ++  ++ A G     ++    LRY K
Sbjct: 355 AKSGRDSMYQAILPLRGKIINVEKARIDKVLKNNEVQSIITAFGTGIHDEFDISKLRYHK 414


>gi|102144060|gb|ABF70171.1| GyrB [Aeromonas hydrophila]
          Length = 381

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 146/393 (37%), Positives = 220/393 (55%), Gaps = 17/393 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P P IF D   F    L K  +  ++L+  V      +++  E         F + GG+K
Sbjct: 60  PSPTIFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIK 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGT
Sbjct: 112 AFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KL
Sbjct: 169 HLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
           VS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+  
Sbjct: 229 VSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDI 288

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 289 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 348

Query: 507 IRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
           + ++Q++  L+ ALGC   R +Y  + LRY  +
Sbjct: 349 MISSQEVGTLITALGCGIGRDEYNPDKLRYHNI 381


>gi|164608606|gb|ABY62594.1| DNA gyrase beta subunit [Aliivibrio wodanis]
 gi|164608608|gb|ABY62595.1| DNA gyrase beta subunit [Aliivibrio wodanis]
          Length = 398

 Score =  206 bits (525), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 153/407 (37%), Positives = 225/407 (55%), Gaps = 14/407 (3%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD+++Y++SGGLHGVG+SVVNALS+++ +T+ R+  IF Q +  G P +PL         
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSEKVELTINRKGEIFQQTYCHGEPQAPLAVVGTTDTT 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
             T+I F P  + F +   F    L K  +  ++L+  V       +E        + + 
Sbjct: 61  G-TKIRFWPSEQTFTNV-EFVYDILAKRLRELSFLNSGVSIILQDMRE------EDKSDH 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           F F GG++ ++     N++ +  +IF    E+K      VE A+ W +     I  Y N 
Sbjct: 113 FMFEGGIQAFVTHLNRNKTPVHQKIFYFDAERK-EDGIVVEVAMQWNDSYQENIFCYTNN 171

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GG H SG R ALTR +  + +      K   S   DD       ++SV + +P+F
Sbjct: 172 IPQRDGGAHLSGFRSALTRTLNTFMDKEGFSKKAKSSASGDDAREGLTAVVSVKVPDPKF 231

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EV 438
           + QTK KLVS + +  VE+A+ +    +L +NP EA  +   +I+ +  R   RK R   
Sbjct: 232 SSQTKDKLVSSEVKSAVESAMNEKLAEFLAENPGEAKMVCSKIIDAARAREAARKAREMT 291

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILN
Sbjct: 292 RRKGALDIAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILN 351

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           V  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDA
Sbjct: 352 VEKARFDKMISSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIMTDA 398


>gi|27530807|dbj|BAC54051.1| DNA gyrase subunit B [Nocardia uniformis]
          Length = 418

 Score =  206 bits (525), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 134/424 (31%), Positives = 212/424 (50%), Gaps = 34/424 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L   + R    +SQ++    P      +     ++G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLQAEIDRDGYHWSQEYKDSKPGKL--VQGDTTKRKG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T I F  DP IF     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTIRFWADPNIFETTT-YNFETVARRLQEMAFLNKGLTITLTDERVSEGDVTDEVVSDTA 117

Query: 250 ---------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                      A      +   +++PGGL+ Y++     ++ I + I     +  G    
Sbjct: 118 EAPKHADETAAAAATPKVKTRTYHYPGGLEDYVKHINRTKTPIHNSIVAFTGKGTGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SI 357
            +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++
Sbjct: 175 ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  
Sbjct: 235 TGDDIREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRACNEHLGHWFEANPADAKT 294

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGG
Sbjct: 295 IVTKAVSSAQARMAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  +  +K+  N ++  ++ A G     ++    LRY 
Sbjct: 355 SAKSGRDSMYQAILPLRGKIINVEKSRIDKVLKNNEVQAIITAFGTGIHDEFDLAKLRYH 414

Query: 537 KVII 540
           K+++
Sbjct: 415 KIVL 418


>gi|259018120|gb|ACV89652.1| DNA gyrase subunit B [Nocardia puris]
          Length = 415

 Score =  206 bits (525), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 129/421 (30%), Positives = 209/421 (49%), Gaps = 34/421 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  + V + R    +SQ +    P      + +   + G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRVEVEIDRDGYHWSQTYKDASPSKL--IQGEPTERTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK---------- 254
           T + F  DP+IF     ++   + +  Q  A+L+  +    + ++    +          
Sbjct: 59  TTVRFWADPEIFETTT-YNFETVSRRLQEMAFLNKGLTIVLTDERVSDSEITDEVVSDTA 117

Query: 255 --------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                             +   +++PGGL+ +++     +  I + +     +  G    
Sbjct: 118 EAPKHAEPGTEAPVEHKVKTRTYHYPGGLEDFVRHINRTKQAIHNSVVGFTGKGTGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SI 357
            +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++
Sbjct: 175 ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+SV + +P+F GQTKTKL + + +  V+    +   H+   NP +A  
Sbjct: 235 TGDDIREGLAAIVSVKVGDPQFEGQTKTKLGNTEVKSFVQKTCNEHLTHWFEANPADAKT 294

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           +++  +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGG
Sbjct: 295 IVQKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +K+  N ++  ++ A G     ++    LRY 
Sbjct: 355 SAKSGRDSMYQAILPLRGKIINVEKARIDKVLKNNEVQSIITAFGTGIHDEFDIAKLRYH 414

Query: 537 K 537
           K
Sbjct: 415 K 415


>gi|157073791|dbj|BAF79894.1| gyrase B [Methylobacterium hispanicum]
 gi|157073829|dbj|BAF79913.1| gyrase B [Methylobacterium hispanicum]
          Length = 399

 Score =  206 bits (525), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 146/408 (35%), Positives = 222/408 (54%), Gaps = 21/408 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS  L + + R +   + +F  G   +PL+       +RG
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSVWLKLRIWRNDQEHAMEFGHGEAKAPLKVVGPGNGRRG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF P  + F     FD A L K  +  A+L+  V+   +  +   +K      EE Y
Sbjct: 61  TEVTFLPSTETF-TMVEFDYATLEKRLRELAFLNSGVRIVLTDARHAEKKR-----EELY 114

Query: 265 FPGGLKTYLQTKLENRSLIS--SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           + GG++ +++    +R  I   S+    ++E+ G     VE A  W +     +  + N 
Sbjct: 115 YDGGIEAFVRYLDRSRKPIEGMSKPVVVRSERDGI---RVEVAFWWNDSFNETVLPFTNN 171

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R ALTR I  YAE +    +  +S+  +D       ++SV + +P+F
Sbjct: 172 IPQRDGGTHMAGFRAALTRQITGYAESSGVAKREKVSLTGEDCREGLTAVISVQVPDPKF 231

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV- 438
           + QTK KLVS + +  VEN L +    +L +NP +A  L+  V+  +  R   RK RE  
Sbjct: 232 SSQTKDKLVSSEVRPAVENVLNEGLSTWLEENPSQAKALMGKVVLAASAREAARKARETV 291

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +      E+ +VEGDSAGGSAKQ R+R+ QAVLPLRGKILN
Sbjct: 292 TRKGALDIASLPGKLADCQERDPTKCEILLVEGDSAGGSAKQGRDRAFQAVLPLRGKILN 351

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVII 540
           V    ++++ ++ +I  L+ ALG         R  +  + LRY ++II
Sbjct: 352 VERVRADRMLSSAEIGTLITALGAGIGRSSTDREGFNPDKLRYHRIII 399


>gi|82940552|emb|CAJ44284.1| gyrase B protein [Vibrio tapetis]
          Length = 384

 Score =  206 bits (525), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 138/393 (35%), Positives = 211/393 (53%), Gaps = 14/393 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS ++ +T+ RQ +   Q +  G P +PL          
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSKQVDLTIHRQGSTHQQTYRHGEPDAPLGVTGDTEK-T 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT I F P  + F +   F    L K  +  ++L+  V      ++E        + + F
Sbjct: 60  GTIIRFWPSEETFTNVH-FHYEILAKRLRELSFLNSGVSIKLIDERE------EDKMDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG + ++     N++ I  ++F    E++     +VE A+ W +     I  + N I
Sbjct: 113 CYEGGTQAFVDYLNTNKTPIIQKVFHFDYERED--GISVEVAMQWNDGYQENIFCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  + +      K   +   DD       I+SV + +P+F+
Sbjct: 171 PQRDGGTHLAGFRAALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAIVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVN 439
            QTK KLVS + +  VE+A+ +    +L++NP EA  +   +I+ +  R   RK      
Sbjct: 231 SQTKDKLVSSEVKSAVESAMGEKLSEFLIENPSEAKIVCSKIIDAARARDAARKAREMTR 290

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 291 RKGALDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 350

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
             A  +K+ ++Q++  L+ ALGC         D
Sbjct: 351 EKARFDKMLSSQEVATLITALGCGIGRDEYNPD 383


>gi|157073815|dbj|BAF79906.1| gyrase B [Methylobacterium komagatae]
          Length = 399

 Score =  206 bits (525), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 142/408 (34%), Positives = 220/408 (53%), Gaps = 21/408 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS  L + + R +   S +F  G  ++PL+       KRG
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSQWLRLRIWRNDQEHSMEFRHGDAVAPLKVVGPGEGKRG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF P  + F     FD   L K  +  A+L+  V+   +  +   +K      EE Y
Sbjct: 61  TEVTFLPSTETF-TMIEFDYPTLEKRLRELAFLNSGVRIVLTDARHAEKKR-----EELY 114

Query: 265 FPGGLKTYLQTKLENRSLIS--SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           + GG++ +++    ++  I   +     + ++ G     VE A  W +     +  + N 
Sbjct: 115 YDGGIEAFVRYLDRSKKPIDGMTNPVVVRADRDGI---RVECAFWWNDSFNETVLPFTNN 171

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R ALTR I  YA+ +    +  +S+  +D       ++SV + +P+F
Sbjct: 172 IPQRDGGTHMAGFRAALTRQITGYADSSGVSKREKVSLTGEDCREGLTAVISVQVPDPKF 231

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV- 438
           + QTK KLVS + +  VEN L +    +L +NP +A  ++  V+  +  R   RK RE  
Sbjct: 232 SSQTKDKLVSSEVRPAVENVLNEGLSTWLEENPQQARVVMSKVVLAASAREAARKARETV 291

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +      E+ +VEGDSAGGSAKQ R+R+ QAVLPLRGKILN
Sbjct: 292 TRKGALDIASLPGKLADCQERDPTKCEILLVEGDSAGGSAKQGRDRAFQAVLPLRGKILN 351

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVII 540
           V    ++++ ++ +I  L+ ALG         R  +  + LRY ++II
Sbjct: 352 VERVRADRMLSSAEIGTLITALGAGIGRSSTDREGFNPDKLRYHRIII 399


>gi|108860569|dbj|BAE95999.1| DNA gyrase B [Rhodococcus tukisamuensis]
          Length = 417

 Score =  206 bits (525), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 135/423 (31%), Positives = 215/423 (50%), Gaps = 33/423 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L V +      + Q ++   P      +       G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLDVDINVDGFEWHQTYTDSKPGEL--IQGAPTKATG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T +TF  DP+IF     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTVTFWADPEIFETTR-YNFETVARRLQEMAFLNKGLTITLTDERAEVIDDEAAEVAEAP 117

Query: 250 ------EIAEKYGIPEKE--EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
                 E  EK G  + +   +++PGGL+ Y++   ++++ I + +     +  G     
Sbjct: 118 RSAAEVEEEEKSGKAKTKSRIYHYPGGLEDYVRHINKSKTPIHNSVVGFTGKGTGH---E 174

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISII 358
           +E A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +     +   + 
Sbjct: 175 LEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTATVNKYALDKKLLKDKDPKLT 234

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  +
Sbjct: 235 GDDIREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQKACNEHLGHWFESNPADAKTI 294

Query: 419 LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           +   +  ++ R+  RK RE V RK+A     LPGKLADC  N    +E++IVEGDSAGGS
Sbjct: 295 VGKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPAKSEIYIVEGDSAGGS 354

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K
Sbjct: 355 AKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDIAKLRYHK 414

Query: 538 VII 540
           +++
Sbjct: 415 IVL 417


>gi|11078697|dbj|BAB17353.1| DNA gyrase subunit B [Pseudomonas fluorescens]
          Length = 389

 Score =  206 bits (525), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 145/401 (36%), Positives = 219/401 (54%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P +P+    +     G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQAPMAIVGE-SETTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+I F+P    F +   F    L K  +  ++L+  V      ++   E       E F 
Sbjct: 60  TQIHFKPSADTFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL+ +++    N++ ++         + G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLRAFVEYLNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH  G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    R
Sbjct: 229 QTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 349 KARFDKMISSQEVGTLITALGCGIGRDEYNIDKLRYHNIII 389


>gi|259018174|gb|ACV89679.1| DNA gyrase subunit B [Nocardia concava]
          Length = 414

 Score =  206 bits (525), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 135/420 (32%), Positives = 207/420 (49%), Gaps = 33/420 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
             +Y +SGGLHGVGISVVNALS  L   V      ++Q++    P      +     + G
Sbjct: 1   GESYAVSGGLHGVGISVVNALSTRLEADVDTDGYHWTQEYKDSKPGKL--VQGGATKRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC----------------- 247
           T I F PDP+IF     F    + +  Q  A+L+  +    +                  
Sbjct: 59  TTIRFWPDPEIFETTT-FSFETVARRLQEMAFLNKGLTITLTDQRVAEGDVIDEVVSETA 117

Query: 248 ------DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
                 D+    +    +   +++PGGL+ Y++     ++ I + I     +  G     
Sbjct: 118 EAPKHLDENAPAETPKIKTRTYHYPGGLEDYVKHINRTKTPIHNSIVAFTGKGTGH---E 174

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SII 358
           VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++ 
Sbjct: 175 VEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKEGNLT 234

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+      I+SV I +P+F GQTKTKL + + +  V+    +   H+   NP +A  +
Sbjct: 235 GDDIREGLAAIVSVKIADPQFEGQTKTKLGNTEVKSFVQRTCNEHISHWFEANPADAKTI 294

Query: 419 LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           ++  +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGS
Sbjct: 295 VQKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPAKSEIYIVEGDSAGGS 354

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K
Sbjct: 355 AKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDIAKLRYHK 414


>gi|259018134|gb|ACV89659.1| DNA gyrase subunit B [Nocardia nova]
          Length = 413

 Score =  206 bits (525), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 131/419 (31%), Positives = 213/419 (50%), Gaps = 32/419 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS  +   + R    +SQ++    P   ++   +  ++ G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSRMVTEIDRDGFHWSQEYKDAKPGKLVK--GEPTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T   F  DP +F     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTQRFWADPDVFETTT-YNFETISRRLQEMAFLNKGLTITLTDERVSDAEVTDEVVSETA 117

Query: 250 ---EIAEKYGIPEKE----EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
              +  E    PE +     +++PGGL+ +++     +  I + + +  ++  G     +
Sbjct: 118 EAPKHDEGAAAPEHKVKTRTYHYPGGLEDFVKHINRTKQPIHNTVVSFTSKGTGH---EL 174

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIIS 359
           E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++  
Sbjct: 175 EVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTG 234

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD+      I+SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  ++
Sbjct: 235 DDIREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIV 294

Query: 420 EWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
           +  +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGSA
Sbjct: 295 QKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSA 354

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           K  R+   QA+LPLRGKI+NV  A  +K+  N ++  ++ A G     ++    LRY K
Sbjct: 355 KSGRDSMYQAILPLRGKIINVEKARIDKVLKNNEVQSIITAFGTGIHDEFDISKLRYHK 413


>gi|308224980|gb|ADO24082.1| DNA gyrase beta subunit [Nocardia sp. W8474]
          Length = 415

 Score =  206 bits (525), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 131/421 (31%), Positives = 208/421 (49%), Gaps = 34/421 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS  L   V      ++Q++    P      + +   + G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSRLEAEVDHDGYHWTQEYKDSKPGKL--VQGESTKRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE-------------- 250
           T I F PDP+IF     F+   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTIRFWPDPEIFETTT-FNFETVARRLQEMAFLNRGLTITLTDERVSGSEVTDEVVSDTA 117

Query: 251 ----------IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                        +    +   +++PGGL+ +++     +  I + +     +  G    
Sbjct: 118 EAPKHLDENAPVAEEPKVKVRTYHYPGGLEDFVKHLNRTKQPIHNSVVGFTGKGTGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SI 357
            +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++
Sbjct: 175 ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+SV I +P+F GQTKTKL + + +  V+    +   H+   NP +A  
Sbjct: 235 TGDDIREGLAAIVSVKISDPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKT 294

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           +++  +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGG
Sbjct: 295 IVQKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY 
Sbjct: 355 SAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYH 414

Query: 537 K 537
           K
Sbjct: 415 K 415


>gi|19909693|dbj|BAB87042.1| DNA gyrase subunit B [Ochrobactrum anthropi]
          Length = 393

 Score =  206 bits (525), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 137/402 (34%), Positives = 217/402 (53%), Gaps = 16/402 (3%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS  L + + R   I    F+ G+  +PL        + GT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGAETGT 60

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            ++F P P  F     FD   L +  +  A+L+  V+   +  +              ++
Sbjct: 61  EVSFLPSPDTFS-MVEFDFDTLERRLRELAFLNSGVRIKLTDRRHADVVEHE-----LHY 114

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GGL  +++   +++  +  E    ++EK G    TVE A+ W +    ++  + N I  
Sbjct: 115 DGGLVEFVKYIDQSKKSLLDEPIYIRSEKDG---MTVEVAMWWNDSYHEKVLCFTNNIPQ 171

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTR +  YA+ +    K  +++  DD       +LSV + +P+F+ Q
Sbjct: 172 RDGGTHLAGFRGALTRQVTGYADASGMTKKEKVTLTGDDCREGLTAVLSVKVPDPKFSSQ 231

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK KLVS + +  VE+ + +    +L ++P     ++E VI+ +  R   RK R++ RK+
Sbjct: 232 TKDKLVSSEVRPVVESLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDITRKS 291

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
            +    LPGKLADC +     +E+FIVEGDSAGGSAK  R+R NQA+LPLRGKILNV   
Sbjct: 292 NLSVTSLPGKLADCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERV 351

Query: 503 GSEKIRNNQQIMDLVQALGCRT----RSQYREEDLRYEKVII 540
             +++ ++ Q+  L+ ALG          +  + LRY K+II
Sbjct: 352 RFDRMISSDQVGTLITALGTSIGKDETHGFNPDKLRYHKIII 393


>gi|12644443|sp|Q44270|GYRB_ACIG3 RecName: Full=DNA gyrase subunit B
 gi|11270908|pir||T43899 DNA gyrase chain B [imported] - Acinetobacter sp. (fragment)
 gi|4514409|dbj|BAA75403.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 388

 Score =  206 bits (525), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 140/400 (35%), Positives = 219/400 (54%), Gaps = 17/400 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +LH+ + R   +  Q++  G P  PL    +  +  G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSSKLHLIINRAGQVHEQEYHHGDPQYPLRVIGET-DSSG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  ++   +  F+   L +  +  ++L+  V+     ++   E         + 
Sbjct: 60  TTVRFWPS-ELTFSQTIFNVEILARRLRELSFLNAGVRIVLRDERINLE-------HVYD 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   E ++ ++         + G     VE A+ W E     +  + N I 
Sbjct: 112 YEGGLSEFVKYINEGKTHLNEIFHFTADTENGI---GVEVALQWNESYQENVRCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+ +Y E      K  +++  DD       I+SV + +P+F+ 
Sbjct: 169 QKDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNR 440
           QTK KLVS + +  VE A+   F  YL++NP  A  +   +I+ +  R   RK      R
Sbjct: 229 QTKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV 
Sbjct: 289 KSALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY K+I
Sbjct: 349 RARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKII 388


>gi|324962628|gb|ADY62416.1| gyrase subunit B [Frankia sp. BMG5.7]
          Length = 363

 Score =  206 bits (525), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 109/335 (32%), Positives = 164/335 (48%), Gaps = 18/335 (5%)

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G + V DNGRGIPV  HP    + T+E++LTTLHAGGKFD  +Y +SGGLHGVGI
Sbjct: 1   TLLADGGVRVTDNGRGIPVGMHP-TEKRPTVEVVLTTLHAGGKFDGESYAVSGGLHGVGI 59

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS  L V +     ++ Q +    P  PL K      + GT +TF  DP IF   
Sbjct: 60  SVVNALSTRLEVEIKVDGFVWFQPYVATRPDKPLAK-GAPTKQTGTTVTFWADPTIFET- 117

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             +    L +  Q  A+L+  +      ++   E+   P    + + GGL  ++      
Sbjct: 118 TEYKFETLYRRLQEMAFLNKGISITLRDER--VEEGEEPVSVTYKYDGGLVDFVIHLNAT 175

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  I   +   +++ KG      E A+ W       + ++ NTI T EGGTHE G R AL
Sbjct: 176 KDAIHRSVIALESKGKGI---EAEVAMQWNAGYNESVYTFANTINTHEGGTHEEGFRAAL 232

Query: 339 TRGIKKYAELTQNKRAISI---------ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           T  +  YA+     + +             DD+      I+SV + EP+F GQTKTKL +
Sbjct: 233 TSAVNAYAKDQNLLKPVKSGSKSGDERLSGDDIREGLTAIISVKLAEPQFEGQTKTKLGN 292

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            +A++ V+         +   N +E   ++   ++
Sbjct: 293 TEAKKFVQEMCYSALGDWFHGNRVEGRAIVGKALD 327


>gi|29652721|gb|AAO87330.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652751|gb|AAO87345.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652817|gb|AAO87378.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652869|gb|AAO87404.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652885|gb|AAO87412.1| DNA gyrase B [Listeria monocytogenes]
 gi|29652907|gb|AAO87423.1| DNA gyrase B [Listeria monocytogenes]
          Length = 187

 Score =  206 bits (524), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 82/183 (44%), Positives = 113/183 (61%), Gaps = 2/183 (1%)

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 7   RKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILN 66

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 67  VEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTL 126

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+K
Sbjct: 127 FYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYK 184

Query: 619 GLG 621
           GLG
Sbjct: 185 GLG 187


>gi|29652711|gb|AAO87325.1| DNA gyrase B [Listeria monocytogenes]
          Length = 183

 Score =  206 bits (524), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 82/183 (44%), Positives = 113/183 (61%), Gaps = 2/183 (1%)

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 3   RKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILN 62

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 63  VEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTL 122

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+K
Sbjct: 123 FYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYK 180

Query: 619 GLG 621
           GLG
Sbjct: 181 GLG 183


>gi|29652905|gb|AAO87422.1| DNA gyrase B [Listeria monocytogenes]
          Length = 194

 Score =  206 bits (524), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 82/183 (44%), Positives = 113/183 (61%), Gaps = 2/183 (1%)

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 14  RKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILN 73

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 74  VEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTL 133

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+K
Sbjct: 134 FYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYK 191

Query: 619 GLG 621
           GLG
Sbjct: 192 GLG 194


>gi|29652847|gb|AAO87393.1| DNA gyrase B [Listeria monocytogenes]
          Length = 188

 Score =  206 bits (524), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 82/183 (44%), Positives = 113/183 (61%), Gaps = 2/183 (1%)

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 8   RKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILN 67

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 68  VEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTL 127

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+K
Sbjct: 128 FYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYK 185

Query: 619 GLG 621
           GLG
Sbjct: 186 GLG 188


>gi|27374981|dbj|BAC53770.1| DNA gyrase B subunit [Marinospirillum insulare]
          Length = 390

 Score =  206 bits (524), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 144/402 (35%), Positives = 222/402 (55%), Gaps = 18/402 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+EL +T+ R   +  Q +S G+P +PL    +     G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELTLTIWRDKQVHEQVYSHGVPQTPLTVIGETEK-SG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + FRP  + F +   F    L K  +  ++L+  VK     ++   E       E F+
Sbjct: 60  TLVRFRPSNETFTNI-EFSFDTLAKRLRELSFLNSGVKISLVDERNNRE-------EIFH 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTG-KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           + GGL+ ++     N++ + S  +   + E+ G     VE A+ W +     I  Y N I
Sbjct: 112 YEGGLRAFVDHLNTNKTTLGSVFYFSNQREEDGV---NVEVAMQWNDGYSENIYCYTNNI 168

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GG H +G R ALTR + +Y E      K  +S   DD       I+SV + +P+F+
Sbjct: 169 PQRDGGAHLAGFRGALTRVLNQYIEQEGLAKKAKVSTTGDDAREGLTAIVSVKVPDPKFS 228

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE  +   F  +L++ P EA  ++  +++ +  R   RK R    
Sbjct: 229 SQTKDKLVSSEVRTAVEQEMGKTFSDFLLEYPQEAKAIVSKMLDAARAREAARKAREMTR 288

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +E+++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV
Sbjct: 289 RKGALDIAGLPGKLADCQEKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNV 348

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
             A  +K+ ++ ++  L+ ALGC   R ++  + LRY  +II
Sbjct: 349 EKARFDKMLSSAEVGTLITALGCGIGREEFNPDKLRYHSIII 390


>gi|19912055|dbj|BAB88339.1| DNA gyrase subunit B [Cytophaga sp. I-2029]
          Length = 391

 Score =  206 bits (524), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 142/395 (35%), Positives = 209/395 (52%), Gaps = 9/395 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+S VNALS  L  TV R   I+ Q++ RG  L P++   + +   GT +TF
Sbjct: 1   VSGGLHGVGVSCVNALSSHLKATVYRDGKIWEQEYERGKTLYPVKSVGESKE-TGTVVTF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD  IF     +    L    +  +YL+  V    +  +   +K      E F+   GL
Sbjct: 60  IPDDTIFTQTTEYSYETLANRMRELSYLNKGVTITLTDKRHKDDKG-EFVSETFHSDEGL 118

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGG 328
           K +++    NR  +   + + + EK G     VE A+ +     E    Y N I T EGG
Sbjct: 119 KEFIKFLDGNREPLIQSVISMEGEKNGIP---VEVAMVYNTGYTENLHSYVNNINTHEGG 175

Query: 329 THESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH SG R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F GQTKTK
Sbjct: 176 THLSGFRRGLTTTLKKYADNSGMLDKLKFEISGDDFREGLTAIVSVKVAEPQFEGQTKTK 235

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IR 445
           L + +    V  A+ +    YL ++P +A +++E V   ++ R    K RE+ ++   + 
Sbjct: 236 LGNREVTSAVSQAVSEMLTDYLEEHPDDAKQIVEKVKLAAQARHAAAKAREMVQRKNPMS 295

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV  A   
Sbjct: 296 VGGLPGKLSDCSEQDPTKCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQH 355

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           K+  N++I ++  ALG    ++   + L  +K+  
Sbjct: 356 KVFENEEIKNIYTALGVTIGTEEDSKALNLDKLRY 390


>gi|308224982|gb|ADO24083.1| DNA gyrase beta subunit [Nocardia sp. W9330]
          Length = 415

 Score =  206 bits (524), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 130/421 (30%), Positives = 208/421 (49%), Gaps = 34/421 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS  L   +      ++Q++    P      + +   + G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSRLEAEIDHDGYHWTQEYKDSKPGKL--VQGESTKRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE-------------- 250
           T I F PDP+IF     F+   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTIRFWPDPEIFETTT-FNFETVARRLQEMAFLNRGLTITLTDERVSGSEVTDEVVSDTA 117

Query: 251 ----------IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                        +    +   +++PGGL+ +++     +  I + +     +  G    
Sbjct: 118 EAPKHLDENAPVAEEPKVKVRTYHYPGGLEDFVKHLNRTKQPIHNSVVGFTGKGTGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SI 357
            +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++
Sbjct: 175 ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+SV I +P+F GQTKTKL + + +  V+    +   H+   NP +A  
Sbjct: 235 TGDDIREGLAAIVSVKISDPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKT 294

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           +++  +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGG
Sbjct: 295 IVQKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY 
Sbjct: 355 SAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYH 414

Query: 537 K 537
           K
Sbjct: 415 K 415


>gi|296051273|gb|ADG86633.1| DNA gyrase subunit B [Gordonia polyisoprenivorans]
          Length = 420

 Score =  206 bits (524), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 135/425 (31%), Positives = 211/425 (49%), Gaps = 38/425 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS ++ V +      +S+ F+   P   ++   +   K G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTKVEVEIDVDGFHWSETFTDSKPDGLVK--GEPTRKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC----------------- 247
           T + F PD  IF +   F+A  + +  Q  A+L+  +    +                  
Sbjct: 59  TTVRFWPDASIFTETTSFNAETVARRLQEMAFLNKGLTITLTDRRPKAVEAPGDPNAEGE 118

Query: 248 ------------DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
                       ++E A     P+   +++P GL  Y++     ++ I   +     +  
Sbjct: 119 ESNTETAEEVKSEEEKAAAATKPKTRTYHYPDGLIDYIKHLNRTKNPIHKSVIGFTGKGT 178

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W       + ++ NTI T EGGTHE G R ALTR +  YA   +   +
Sbjct: 179 GH---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTRVVNSYAREKKLLKE 235

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
           +  ++  DD+      ++SV + +P+F GQTKTKL + + +  V  A  +  +H+   NP
Sbjct: 236 KDDNLTGDDIREGLAAVISVKVSDPQFEGQTKTKLGNTEVKSFVLKASGEHIEHWFEANP 295

Query: 413 IEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
            EA  ++   +E +  R   RK RE V RK+A     LPGKLADC  N     E+++VEG
Sbjct: 296 AEAKIIINKAVESAHARQAARKARELVRRKSATDIGGLPGKLADCRSNDPSKCEIYLVEG 355

Query: 472 DSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE 531
           DSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++  +
Sbjct: 356 DSAGGSAKTGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDIK 415

Query: 532 DLRYE 536
            LRY 
Sbjct: 416 KLRYH 420


>gi|225547696|gb|ACN93661.1| DNA gyrase subunit B [Nocardia tenerifensis]
          Length = 416

 Score =  206 bits (524), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 134/422 (31%), Positives = 210/422 (49%), Gaps = 35/422 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS +L   V R    ++Q +   +P      +     + G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSSQLEAEVYRDGYHWTQTYKDSVPGKL--IQGDPSKQTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T I F  DP IF     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTIRFWADPNIFETTT-YNFETVARRLQEMAFLNKGLTITLTDERVTEAEVTDEVVSETA 117

Query: 250 ----------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
                     E A      ++  +Y+PGGL+ +++     +  I + +     +  G   
Sbjct: 118 DAPKHAEDEAEAAPAEHKVKQRTYYYPGGLEDFVRHINRTKQPIHNSVVGFTGKGPGH-- 175

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--S 356
             +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    +
Sbjct: 176 -ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGN 234

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           +  DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +A 
Sbjct: 235 LTGDDIREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQKACNEHLSHWFEANPADAK 294

Query: 417 KLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAG
Sbjct: 295 TIVNKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAG 354

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           GSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY
Sbjct: 355 GSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRY 414

Query: 536 EK 537
            K
Sbjct: 415 HK 416


>gi|317448556|emb|CBW30250.1| gyrase B subunit [Pseudoalteromonas tetraodonis]
          Length = 390

 Score =  206 bits (524), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 136/392 (34%), Positives = 218/392 (55%), Gaps = 15/392 (3%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS++L +T+ R+  +  Q +S G+P +PL       +  GT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKLTLTIRREGKLHEQTYSMGVPNAPLAVIGDA-DTTGTE 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F P  + F +   F    L K  +  ++L+  V    S ++E        + + F + 
Sbjct: 60  LRFWPSGETFTNL-DFHYDILAKRLRELSFLNSGVSIILSDERE------ENKTDHFKYD 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG++ +++    N++ +   +F    E++     +VE ++ W +     I  + N I   
Sbjct: 113 GGIQAFVEYLNRNKTPVHKGVFHFTHERE-EDGISVEVSMQWNDGFQENIYCFTNNIPQR 171

Query: 326 EGGTHESGLRVALTRGIKKYA----ELTQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
           +GGTH +G R ALTR +  Y        + K   +   DD       ++SV + +P+F+ 
Sbjct: 172 DGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKFSS 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE A+ + F  +L++NP++A  ++  +I+ +  R   RK R    R
Sbjct: 232 QTKDKLVSSEVKSAVEQAMAEKFSDFLLENPMDAKIVVGKIIDAARAREAARKAREMTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 292 KGAMDLAGLPGKLADCQEKDPSLSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
            A  +K+ ++Q++  L+ ALGC       + +
Sbjct: 352 KARFDKMLSSQEVATLITALGCGIGRDEYDPE 383


>gi|3985960|dbj|BAA34865.1| DNA gyrase subunit B protein [Nitrosomonas europaea]
          Length = 389

 Score =  206 bits (524), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 140/401 (34%), Positives = 225/401 (56%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+ L +T+ R   ++  +F  G+ ++PL+   +     G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEWLRLTIRRNGNVYQMEFREGVAVAPLKVTGQTEKH-G 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F     +FGD   +      K  +  ++L+  +K   +  ++  E       E F 
Sbjct: 60  TEVHFLASQSVFGDIT-YHYDIFAKRLRELSFLNHGIKIRLADQRDDRE-------EVFA 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           F GG++ +++    +++++   IF  K  K      TVE A+ W +    ++  + N I 
Sbjct: 112 FTGGIRNFVEYINRSKTVLHPSIFYAKGLKDNI---TVEIAMQWNDSYAEQVLCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +GLR A+TR +  Y E  +   K  +    DD+      +LSV + EP+F+ 
Sbjct: 169 QKDGGTHLTGLRAAMTRTLNNYIEKNELAKKAKVDTTGDDMREGITCVLSVKLFEPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTK KLVS +    VE  +      +L++NP EA  +   +IE +  R   RK RE + R
Sbjct: 229 QTKEKLVSSEVHPAVEEIVVQKLSDFLLENPNEAKTICNKIIEAARAREAARKARELIRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K  +  + LPGKLADC +      EL++VEGDSAGGSAKQ R+R  QA++PL+GKILNV 
Sbjct: 289 KGVLDSMGLPGKLADCQEKDPKLCELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            +  +K+ ++Q+I+ L+ ALG    + +Y  + LRY ++II
Sbjct: 349 KSRFDKLISSQEIVSLITALGTGIGKDEYNPDKLRYHRIII 389


>gi|207678292|gb|ACI25158.1| DNA gyrase B [Phaeobacter sp. M23-3.1]
          Length = 378

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 130/383 (33%), Positives = 201/383 (52%), Gaps = 13/383 (3%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
            +Y++SGGLHGVG+SVVNALSD L + + R       +F RG     L+      ++ GT
Sbjct: 1   HSYKVSGGLHGVGVSVVNALSDWLELRIWRDGKEHVARFERGDTAEHLKVVGDCGDQTGT 60

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            + F      F +   +    L K  +  A+L+  V+     ++          + E ++
Sbjct: 61  EVRFLASTDTFSN-LEYLFETLEKRLRELAFLNSGVRIILIDER-----PAERLEVELFY 114

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG+K +++    ++S +         ++       VE A+ W +     +  + N I  
Sbjct: 115 EGGVKEFVKYLDRSKSPVMEAPIYITGDRD---EIGVEVAMWWNDSYHETVLPFTNNIPQ 171

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTR I  YA+ +    K  +S   DD       +LSV + +P+F+ Q
Sbjct: 172 RDGGTHVAGFRGALTRTINNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQ 231

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TK KLVS + +  VE+ + +    +  +NP +A +++  +IE +  R   RK RE   RK
Sbjct: 232 TKDKLVSSEVRPVVESLVNEKLAEWFEENPNQAKQIVGKIIEAALAREAARKARELTRRK 291

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           TA+    L GKL DCS+     TE+F+VEGDSAGGSA+  R+R  QA+LPLRGKILNV  
Sbjct: 292 TAMDVNYLAGKLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRMTQAILPLRGKILNVER 351

Query: 502 AGSEKIRNNQQIMDLVQALGCRT 524
           A  +++  +Q+I +LV ALG   
Sbjct: 352 ARFDRMLGSQEIGNLVMALGTGI 374


>gi|157073817|dbj|BAF79907.1| gyrase B [Methylobacterium persicinum]
          Length = 399

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 142/408 (34%), Positives = 223/408 (54%), Gaps = 21/408 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS  L + + R +   + +F  G  ++PL+     + +RG
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSQWLRLRIWRNDQEHAMEFRHGDAVAPLKVVGPGQGRRG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF P    F     FD A L K  +  A+L+  V+   +  +   +K      EE Y
Sbjct: 61  TEVTFLPSTDTF-TMIEFDYATLEKRLRELAFLNSGVRIVLTDARHAEKKR-----EELY 114

Query: 265 FPGGLKTYLQTKLENRSLIS--SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           + GG++ +++    ++  I   +   T + E++G     VE A  W +     +  + N 
Sbjct: 115 YDGGIEAFVRYLDRSKKPIEGMTNPVTVRAEREGI---RVEVAFWWNDSFNETVLPFTNN 171

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R ALTR I  YA+ +    +  +++  +D       ++SV + +P+F
Sbjct: 172 IPQRDGGTHMAGFRAALTRQITGYADSSGVSKREKVTLTGEDCREGLTAVISVQVPDPKF 231

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV- 438
           + QTK KLVS + +  VEN L +    +L +NP +A  ++  V+  +  R   RK RE  
Sbjct: 232 SSQTKDKLVSSEVRPAVENVLNEGLSTWLEENPQQARAVMGKVVLAASAREAARKARETV 291

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +      E+ +VEGDSAGGSAKQ R+R+ QAVLPLRGKILN
Sbjct: 292 TRKGALDIASLPGKLADCQERDPSKCEILLVEGDSAGGSAKQGRDRAFQAVLPLRGKILN 351

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVII 540
           V    ++++ ++ +I  L+ ALG         R  +  + LRY ++II
Sbjct: 352 VERVRADRMLSSAEIGTLITALGAGIGRSSTDREGFNPDKLRYHRIII 399


>gi|89511878|dbj|BAE86872.1| DNA gyrase subunit B [Leptospira biflexa serovar Patoc]
 gi|283132379|dbj|BAI63595.1| DNA gyrase subunit B [Leptospira biflexa]
          Length = 387

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 137/398 (34%), Positives = 208/398 (52%), Gaps = 17/398 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS  L V V ++  +  QK+  G+P+  ++   +    RGT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSTYLEVEVHQEGKLHYQKYQAGVPVEDVKIIGETT-HRGTVV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            FRPD  IF     F    L    +  A+L+  +       ++            F F G
Sbjct: 60  RFRPDHTIFTTV-DFSFDTLSARFREIAFLNKGLLIRIEDQRKEEFAKHE-----FKFDG 113

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+ ++++   E++  +   +     EK+       E A+ +C+     I  + N I  + 
Sbjct: 114 GIVSFVEYITESKHPLHKVLHFV-GEKENVW---AEIALQYCDTYSENIFCFTNAINNNL 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQ---NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           GGTH  G R ALTR +  + +  Q    K+   +  DD+      ++S+ I +P+F  QT
Sbjct: 170 GGTHLEGFRTALTRTLNDHLKKDQTLFKKQPNGLQGDDIKEGLCAVISIKIPQPQFNSQT 229

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKT 442
           K KLV+ + +  ++    +  + Y  +NP    K+LE  I  S+ R   R+ R+   RKT
Sbjct: 230 KEKLVNAEVKGLMQTITGEGLNRYFEENPAIIKKILEKCILASKAREAARRARDLTRRKT 289

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
            +    LPGKLADCS+      ELF+VEGDSAGGSAKQ R+R+ QA+LPL+GKILNV  A
Sbjct: 290 VLEGGGLPGKLADCSEKDPEHCELFLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKA 349

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVI 539
             +KI +N++I  L+  +G          E LRY K+I
Sbjct: 350 RLDKILSNEEIRTLITVMGTGIGDDEFNVEKLRYRKII 387


>gi|323362399|gb|ADX42112.1| DNA gyrase beta subunit [Nocardia cyriacigeorgica]
 gi|323362401|gb|ADX42113.1| DNA gyrase beta subunit [Nocardia cyriacigeorgica]
 gi|323362403|gb|ADX42114.1| DNA gyrase beta subunit [Nocardia cyriacigeorgica]
 gi|323362405|gb|ADX42115.1| DNA gyrase beta subunit [Nocardia cyriacigeorgica]
 gi|323362407|gb|ADX42116.1| DNA gyrase beta subunit [Nocardia cyriacigeorgica]
 gi|323362409|gb|ADX42117.1| DNA gyrase beta subunit [Nocardia cyriacigeorgica]
 gi|323362411|gb|ADX42118.1| DNA gyrase beta subunit [Nocardia cyriacigeorgica]
          Length = 415

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 132/421 (31%), Positives = 209/421 (49%), Gaps = 33/421 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L   V      ++Q++    P      + +   + G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLEAEVDHAGYHWTQEYKDATPGKL--VQGEPTTRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T I F PDP IF     F+   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTIRFWPDPNIFETT-SFNFETVARRLQEMAFLNKGLTITLTDERVSDTEVTDEVVSETA 117

Query: 250 --------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
                   E  +     +   +++PGGL+ +++     +  I + +     +  G     
Sbjct: 118 EAPKHADAEAQQTEHKVKSRTYHYPGGLEDFVRHINRTKQPIHNSVVAFTGKGTGH---E 174

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SII 358
           +E A+ W       + ++ NTI T EGGTHE G R ALT  + +YA+  +  +    ++ 
Sbjct: 175 LEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNRYAKEKKLLKDKDGNLT 234

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+      I+SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  +
Sbjct: 235 GDDIREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTI 294

Query: 419 LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           +   +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGS
Sbjct: 295 VNKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGS 354

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  R+   QA+LPLRGKI+NV  A  +K+  N ++  ++ A G     ++    LRY K
Sbjct: 355 AKSGRDSMYQAILPLRGKIINVEKARIDKVLKNNEVQAIITAFGTGIHDEFDISKLRYHK 414

Query: 538 V 538
           +
Sbjct: 415 I 415


>gi|313574587|emb|CBX26146.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574589|emb|CBX26147.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574593|emb|CBX26149.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
          Length = 392

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 143/401 (35%), Positives = 215/401 (53%), Gaps = 14/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS  L + + R   +    F+ G+  +PL    +   + G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSVWLKLRIRRNGKVHEIGFTHGVADAPLSVIGEYEGRSG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF   P+ F     +D   L    +  A+L+  V+   +  +    K     +EE  
Sbjct: 61  TEVTFLASPETF-TMTDYDYGTLEHRLRELAFLNSGVRILLTDKRHSDVK-----QEELL 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GGL+ +++     +  +  +    K EK G    TVE A+ W +   E    + N I 
Sbjct: 115 YDGGLEAFVRYLDRAKKPLVDKPVAIKGEKDGI---TVEVALWWNDSYHENVLCFTNNIP 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  YAE +    K  +S+  +D       ILSV + +P+F+ 
Sbjct: 172 QRDGGTHMAGFRAALTRQVTSYAETSGILKKEKVSLQGEDCREGLTAILSVKVPDPKFSS 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNR 440
           QTK KLVS + +  VE+ + +    +L ++P +A  L+ + V         R+ +    R
Sbjct: 232 QTKDKLVSSEVRPVVESLVNEALSTWLEEHPSDARILVGKVVEAAVAREAARKARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADCS+     +ELF+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 292 KGALDIASLPGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVII 540
            A  +K+ ++Q+I  L+ ALG          + LRY K+II
Sbjct: 352 RARFDKMLSSQEIGTLITALGTSIGKDEFNADKLRYHKIII 392


>gi|32480599|gb|AAP83865.1| DNA gyrase subunit B [Xylella fastidiosa]
 gi|32480601|gb|AAP83866.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 392

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 147/403 (36%), Positives = 228/403 (56%), Gaps = 16/403 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKFD+++Y++SGGLHGVG+SVVNALS+ L + + R    + Q++  G P  PL++  
Sbjct: 1   HAGGKFDDNSYKVSGGLHGVGVSVVNALSERLWLDIWRDGYHYQQEYVLGEPQYPLKQLG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
            V  KRGT + F+P  +IF D   F    L K  +  ++L+  ++     ++        
Sbjct: 61  -VSAKRGTTLRFKPAKEIFSD-VEFHYENLAKRLRELSFLNSGLQVSLIDERG------E 112

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
             +++F++ GG++++++   + ++ + S + +   E  G     V+ A+ W +     + 
Sbjct: 113 GRRDDFHYEGGIRSFVEHLAQLKTPLHSNVISVTGEHNGI---VVDVALQWTDAYQETMY 169

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFI 374
            + N I   +GGTH +G R ALTR +  Y E     R   I    DD+    + +LSV +
Sbjct: 170 CFTNNIPQKDGGTHLAGFRAALTRTLGNYIEQNGIARQAKITFSGDDMREGMIAVLSVKV 229

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP F+ QTK KLVS D +  VE       + +L +NP EA  +   +++ +  R   RK
Sbjct: 230 PEPSFSSQTKEKLVSSDVKPAVEATFGLRLEEFLQENPNEARAIAGKIVDAARAREAARK 289

Query: 435 QREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            R++ R+   +    LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR NQAVLPLR
Sbjct: 290 ARDLTRRKGVLDIAGLPGKLADCQEKDPAMSELFIVEGDSAGGSAKQGRNRKNQAVLPLR 349

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRY 535
           GKILNV  A  +++ ++ ++  L+ ALG    + +Y  + LRY
Sbjct: 350 GKILNVERARFDRMLSSAEVGTLITALGTGIGKDEYNPDKLRY 392


>gi|4514433|dbj|BAA75415.1| DNA gyrase subunit B [Acinetobacter radioresistens]
          Length = 389

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 142/401 (35%), Positives = 219/401 (54%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L +TV R   I  Q++  G+P  PL    +   + G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSSKLELTVQRAGQIHEQEYQHGVPQYPLRVVGQT-ERTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T++ F P  + F     F+   L +  +  ++L+  V+     ++   E         F 
Sbjct: 60  TKVRFWPSAETFSQTI-FNVDILARRLRELSFLNAGVRIVLCDERINLE-------HVFD 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   E ++ ++         + G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLSEFVKYINEGKNHLNEIFHFTTQAENGI---GVEVALQWNDSYQENVRCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  +++  DD       I+SV + +P+F+ 
Sbjct: 169 QKDGGTHLAGFRAALTRGLNSYLENENILKKEKVAVTGDDAREGLTAIVSVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNR 440
           QTK KLVS + +  VE A+   F  YL++NP  A  +   +I+ +  R   RK      R
Sbjct: 229 QTKEKLVSSEVKPAVEQAMNKAFSEYLLENPAAAKSIAGKIIDAARARDAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADC +     +ELF+VEGDSAGGSAKQ RNR  QA+LPL+GKILNV 
Sbjct: 289 KSALDIAGLPGKLADCQEKDPALSELFLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +++ ++ ++  L+ ALGC   R +Y  + LRY K++I
Sbjct: 349 RARFDRMISSAEVGTLITALGCGIGREEYNPDKLRYHKIVI 389


>gi|19909613|dbj|BAB87002.1| DNA gyrase subunit B [Methylococcus capsulatus str. Bath]
          Length = 386

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 144/398 (36%), Positives = 229/398 (57%), Gaps = 17/398 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS+ L + + R    + Q++  G PL+PL +     +  GT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSERLWLEICRGGRRYRQEYRDGEPLAPLAEVGPA-DTTGTTV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+P P+IF +   F    L K  +  ++L+  V+      +         + E F F G
Sbjct: 60  RFKPSPQIFSNI-EFHYEILAKRLRELSFLNSGVRIELEDKRS-------GKNEVFEFEG 111

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G++ +++   +N++ +  ++F  + E+ G     VE A+ W +     +  Y N I   +
Sbjct: 112 GIRAFVEHLNKNKTPLFDKVFHLQAERDGV---GVEIAMQWNDSYQENVFCYTNNIPQRD 168

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R ALTR + +Y E      K+ ++ + DD       +LSV + +P+F+ QTK
Sbjct: 169 GGTHLAGFRAALTRTVNQYIEEQGLLKKQKVATVGDDAREGLTAVLSVKVPDPKFSSQTK 228

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTA 443
            KLVS + +  VE+ + +  + +L++NP  A  +   V++ +  R   RK R    RK+A
Sbjct: 229 EKLVSSEVKSVVESVMAEKLNDFLLENPSIARTIANKVVDAARAREAARKAREMTRRKSA 288

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +     +ELFIVEGDSAGGSAKQ R+R +QA+LPL+GKILNV  A 
Sbjct: 289 LDIAGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRRSQAILPLKGKILNVERAR 348

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            +K+ +++++  L+ ALGC   R +Y  + LRY ++II
Sbjct: 349 FDKMLSSEEVGTLITALGCGIGREEYNPDKLRYHRIII 386


>gi|308152479|dbj|BAJ22218.1| DNA gyrase subunit B [Rhodococcus globerulus]
 gi|308152481|dbj|BAJ22219.1| DNA gyrase subunit B [Rhodococcus globerulus]
          Length = 420

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 135/426 (31%), Positives = 211/426 (49%), Gaps = 36/426 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS ++ + +      + Q ++   P      +     K G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTKVELEINYGGHHWEQTYNYAKPGPL--VQGAATRKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC--------------DKE 250
           T + F  DP+IF     + A  + +  Q  A+L+  +    +               D++
Sbjct: 59  TTVRFWADPEIFETTT-YSAETVARRLQEMAFLNKGLTITLTDRRPQTAAADAVVEGDED 117

Query: 251 IAEKYGI------------PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH 298
            AEK               P    +++P GL  Y++     ++ I   +     +  G  
Sbjct: 118 TAEKPKTAEEEAVAPTVTKPRTRTYHYPDGLIDYIKHLNRTKTPIHQSVIGFTAKGTGH- 176

Query: 299 RGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAI 355
              VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++  
Sbjct: 177 --EVEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLLKEKDG 234

Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415
            +  DD+      ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP EA
Sbjct: 235 KLSGDDIREGLAAVISVKVADPQFEGQTKTKLGNTEVKSFVQKTCNEHLGHWFEANPAEA 294

Query: 416 TKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSA 474
             +++  ++ ++ RL  RK RE V RKTA     LPGKLADC  N     E++IVEGDSA
Sbjct: 295 KIIVKKAVDSAQARLAARKARELVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSA 354

Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
           GGSAK  R+   QA+LP+RGKI+NV  A  +++  N ++  ++ A G     ++    LR
Sbjct: 355 GGSAKSGRDSMYQAILPIRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDLAKLR 414

Query: 535 YEKVII 540
           Y K+++
Sbjct: 415 YHKIVL 420


>gi|32480587|gb|AAP83859.1| DNA gyrase subunit B [Xylella fastidiosa]
 gi|32480589|gb|AAP83860.1| DNA gyrase subunit B [Xylella fastidiosa]
 gi|32480591|gb|AAP83861.1| DNA gyrase subunit B [Xylella fastidiosa]
 gi|32480595|gb|AAP83863.1| DNA gyrase subunit B [Xylella fastidiosa]
 gi|32480605|gb|AAP83868.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 392

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 148/403 (36%), Positives = 229/403 (56%), Gaps = 16/403 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKFD+++Y++SGGLHGVG+SVVNALS+ L + + R    + Q++  G P  PL++  
Sbjct: 1   HAGGKFDDNSYKVSGGLHGVGVSVVNALSERLWLDIWRDGYHYQQEYVLGDPQYPLKQL- 59

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +V  KRGT + F+P  +IF D   F    L K  +  ++L+  +K     ++        
Sbjct: 60  EVSAKRGTTLRFKPAKEIFSD-VEFHYENLAKRLRELSFLNSGLKVSLIDERG------E 112

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
             +++F++ GG++++++   + ++ + S + +   E  G     V+ A+ W +     + 
Sbjct: 113 GRRDDFHYEGGIRSFVEHLAQLKTPLHSNVISVTGEHNGI---VVDVALQWTDAYQETMY 169

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFI 374
            + N I   +GGTH +G R ALTR +  Y E     R   I    DD+    + +LSV +
Sbjct: 170 CFTNNIPQKDGGTHLAGFRAALTRTLGNYIEQNGIARQAKITFSGDDMREGMIAVLSVKV 229

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP F+ QTK KLVS D +  VE       + +L +NP EA  +   +++ +  R   RK
Sbjct: 230 PEPSFSSQTKEKLVSSDVKPAVEATFGLRLEEFLQENPNEARAIAGKIVDAARAREAARK 289

Query: 435 QREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            R++ R+   +    LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR NQAVLPLR
Sbjct: 290 ARDLTRRKGVLDIAGLPGKLADCQEKDPAMSELFIVEGDSAGGSAKQGRNRKNQAVLPLR 349

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRY 535
           GKILNV  A  +++ ++ ++  L+ ALG    + +Y  + LRY
Sbjct: 350 GKILNVERARFDRMLSSAEVGTLITALGTGIGKDEYNPDKLRY 392


>gi|211927059|dbj|BAG82782.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|211927061|dbj|BAG82783.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 421

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 132/427 (30%), Positives = 208/427 (48%), Gaps = 37/427 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS  + + +      + Q+++   P    +       K G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTRVELEINYGGFHWEQEYNNAKPSPLEK--GDATRKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE----------- 253
           T + F PD  IF     F A  + +  Q  A+L+  +    + ++   E           
Sbjct: 59  TTVRFWPDASIFETTT-FSAETVARRLQEMAFLNKGLTITLTDNRLSDEAAVAEAEMDPD 117

Query: 254 ----------------KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                           K        +++P GL  Y++     ++ I + +     +  G 
Sbjct: 118 AEEGAETIKSDAEKAQKAAKVRTRTYHYPDGLVDYIKHLNRTKNAIHTSVVGFTAKGTGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++ 
Sbjct: 178 ---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYAYDKKLLKEKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             +  DD+      ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP E
Sbjct: 235 GKLTGDDIREGLAAVISVKVGDPQFEGQTKTKLGNTEVKSFVQKTCNEHLAHWFEANPAE 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  +++  ++ ++ R+  RK RE V RKTA     LPGKLADC  N     E++IVEGDS
Sbjct: 295 AKIIIKKAVDSAQARMAARKARELVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LP+RGKI+NV  A  +++  N ++  ++ A G     ++    L
Sbjct: 355 AGGSAKSGRDSMYQAILPIRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDLAKL 414

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 415 RYHKIVL 421


>gi|38224428|gb|AAR14137.1| DNA gyrase B subunit [Fusobacterium necrophorum subsp.
           funduliforme]
          Length = 403

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 140/413 (33%), Positives = 215/413 (52%), Gaps = 18/413 (4%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRN 201
           +N  Y++SGGLHGVGISVVNALS+   V V R+  ++ QK+ RG P+  ++     +   
Sbjct: 1   ENDNYKVSGGLHGVGISVVNALSEWTEVKVKREGNVYYQKYLRGKPIEDVKIISALEAGE 60

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             GT +TF+PD +IF     F+   L    +  AYL+  ++      +       I +KE
Sbjct: 61  TTGTIVTFKPDIEIFETVI-FEYEVLQHRLKELAYLNRGLEINLLDCR-----NEIGKKE 114

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCN 320
            F F GG+  +L+   +    + S+    + + +   +  V+ A  +   ++  I S+ N
Sbjct: 115 SFQFEGGISDFLKEVTQENQTLLSKQIHIEGQAE---QVGVDIAFTYTTGQSEIIYSFVN 171

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQN---KRAISIISDDLMISAVGILSVFIREP 377
            I T EGG+H   L   + +G     + +     K+  +          + I+SV + +P
Sbjct: 172 NINTTEGGSHVPDL-ELVYKGFNDIGKKSGTFEGKKMENYKEATFGKELLLIISVKVPQP 230

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F GQTKTKL + +    V   L      +L  NP +   ++E ++   + R   ++ RE
Sbjct: 231 QFEGQTKTKLGNSEVSGIVNTVLSTDLKIFLEDNPNDTKLIIEKILNSKKAREAAQRARE 290

Query: 438 VNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              + + +    LPGKLADCS       E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKI
Sbjct: 291 AVLRKSVLEVGSLPGKLADCSSKKPEECEIFLVEGDSAGGSAKQGRDRYFQAILPLKGKI 350

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDG 548
           LNV  AG  K   + +I  +V A G     +  + E LRY K+I+MTDADVDG
Sbjct: 351 LNVEKAGLHKALESDEIRAMVTAFGTNIGEESFDLEKLRYGKIILMTDADVDG 403


>gi|32480585|gb|AAP83858.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 392

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 146/403 (36%), Positives = 227/403 (56%), Gaps = 16/403 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKFD+++Y++SGGLHGVG+SVVNALS+ L + + R    + Q++  G P  PL++  
Sbjct: 1   HAGGKFDDNSYKVSGGLHGVGVSVVNALSERLWLDIWRDGYHYQQEYVLGEPQYPLKQL- 59

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +V  KRGT + F+P  +IF D   F    L K  +  ++L+  +K     ++        
Sbjct: 60  EVSAKRGTTLRFKPAKEIFSD-VEFHYENLAKRLRELSFLNSGLKVSLIDERG------E 112

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
             +++F++ GG++++++   + ++ +   + +   E  G     V+ A+ W +     + 
Sbjct: 113 GRRDDFHYEGGIRSFVEHLAQLKTPLHPNVISVTGEHNGI---VVDAALQWTDAYQETMY 169

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFI 374
            + N I   +G TH +G R ALTR +  Y E     R   I    DD+    + +LSV +
Sbjct: 170 CFTNNIPQKDGRTHLAGFRAALTRTLGNYIEQNGIARQAKITFSGDDMREGMIAVLSVKV 229

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP F+ QTK KLVS D +  VE       + +L +NP EA  +   +++ +  R   RK
Sbjct: 230 PEPSFSSQTKEKLVSSDVKPAVEATFGLRLEEFLQENPNEARAIAGKIVDAARAREAARK 289

Query: 435 QREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            R++ R+   +    LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR NQAVLPLR
Sbjct: 290 ARDLTRRKGVLDIAGLPGKLADCQEKDPAMSELFIVEGDSAGGSAKQGRNRKNQAVLPLR 349

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRY 535
           GKILNV  A  +++ ++ ++  L+ ALG    + +Y  + LRY
Sbjct: 350 GKILNVERARFDRMLSSAEVGTLITALGTGIGKDEYNPDKLRY 392


>gi|83854007|gb|ABC47941.1| gyrase B subunit [Vibrio parahaemolyticus]
          Length = 385

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 143/395 (36%), Positives = 220/395 (55%), Gaps = 15/395 (3%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K GT+I 
Sbjct: 1   KVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKTGTQIR 59

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F P  + F +   F    L K  +  ++L+  V      ++E        +++ F + GG
Sbjct: 60  FWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KQDHFMYEGG 112

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           ++ ++Q    N++ I  +IF    E++     +VE A+ W +     I  + N I   +G
Sbjct: 113 IQAFVQHLNTNKTPIIEKIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNNIPQRDG 170

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QTK 
Sbjct: 171 GTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKD 230

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAI 444
           KLV  + +  VE+A+ +    +LV+NP EA  +   +I+ +  R   RK R    RK A+
Sbjct: 231 KLVLSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGAL 290

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  
Sbjct: 291 DLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARF 350

Query: 505 EKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
           +K+ ++Q++  L+ ALGC   R +Y  + LRY  +
Sbjct: 351 DKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNI 385


>gi|29652827|gb|AAO87383.1| DNA gyrase B [Listeria monocytogenes]
          Length = 179

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 82/179 (45%), Positives = 111/179 (62%), Gaps = 2/179 (1%)

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
            +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A
Sbjct: 3   GLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKA 62

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
             ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ 
Sbjct: 63  RLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRY 122

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
           M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+KGLG
Sbjct: 123 MRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYKGLG 179


>gi|29652681|gb|AAO87310.1| DNA gyrase B [Listeria monocytogenes]
          Length = 177

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 82/179 (45%), Positives = 111/179 (62%), Gaps = 2/179 (1%)

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
            +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A
Sbjct: 1   GLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKA 60

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
             ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ 
Sbjct: 61  RLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRY 120

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
           M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+KGLG
Sbjct: 121 MRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYKGLG 177


>gi|11078707|dbj|BAB17358.1| DNA gyrase subunit B [Pseudomonas alcaligenes]
          Length = 389

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 147/401 (36%), Positives = 217/401 (54%), Gaps = 18/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS EL +T+ R   I+ Q +  G+P +PL          G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSKELVLTIRRSGKIWEQTYVHGVPQAPLAPVGDSEG-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+I F+P    F +   F    L K  +  ++L+  V      ++   E       E F 
Sbjct: 60  TQIHFKPSDDTFKNIH-FSWDILAKRIRELSFLNSGVGIVLRDERSGKE-------ELFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           + GGLK +++    N++ ++       + E+ G     VE A+ W +     I  + N I
Sbjct: 112 YEGGLKAFVEYLNTNKTAVNQVFHFNCQREEDGV---GVEVALQWNDSFNENILCFTNNI 168

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  Y E     +        DD       I+SV + +P+F+
Sbjct: 169 PQRDGGTHLAGFRSALTRHLNNYIEQEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFS 228

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    
Sbjct: 229 SQTKDKLVSSEVKTAVEQEMGKYFGDFLLENPNEAKAVVGKMIDAARAREAARKAREMTR 288

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR  QA+LPL+GKILNV
Sbjct: 289 RKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNV 348

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 349 EKARFDKMLSSQEVGTLITALGCGIGREEYNIDKLRYHNII 389


>gi|19909635|dbj|BAB87013.1| DNA gyrase subunit B [Rhodopseudomonas palustris]
          Length = 390

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 153/399 (38%), Positives = 215/399 (53%), Gaps = 12/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS  L + V R       +F+ G  ++PL        KRG
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSSRLLLRVWRDGKEHFIEFAHGEAVAPLAVVGDAGGKRG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF    + F +   +D A L    +  A+L+  V    S  +   EK      EE  
Sbjct: 61  TEVTFYASAETFTNV-EYDFATLEHRLRELAFLNSGVNILLSDLRHGIEKR-----EEMR 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+  +++    N+  I     T   E  G    TVE A+ W +   E    + N I 
Sbjct: 115 YEGGVVEFVKYLDRNKKAIVPMPITILAEMNGI---TVECALWWNDSYHENVLCFTNNIP 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
             +GGTH +G R ALTR +  YA++   K  I++  DD       +LSV + +P+F+ QT
Sbjct: 172 QRDGGTHLAGFRGALTRQVNGYADVIAKKEKITLTGDDCREGLTAVLSVKVPDPKFSSQT 231

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKT 442
           K KLVS + +  VEN + +    +  ++P EA  ++  V+E +  R   RK RE   RK 
Sbjct: 232 KDKLVSSEVRPVVENVINEALASWFEEHPAEAKTIVGKVVEAAAAREAARKARELTRRKG 291

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR  QAVLPLRGKILNV  A
Sbjct: 292 ALDIASLPGKLADCQERDPAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERA 351

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
             +K+ ++ Q+  L+ ALG    R  +    LRY K+I+
Sbjct: 352 RFDKMLSSDQVGTLITALGTGIGRDDFDISKLRYHKIIL 390


>gi|308152471|dbj|BAJ22214.1| DNA gyrase subunit B [Gordonia sputi]
 gi|308153198|dbj|BAJ22188.1| DNA gyrase subunit B [Gordonia sputi]
 gi|308153200|dbj|BAJ22189.1| DNA gyrase subunit B [Gordonia sputi]
          Length = 420

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 135/426 (31%), Positives = 211/426 (49%), Gaps = 36/426 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS ++ + +      + Q ++   P      +     K G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTKVELEINYGGYHWEQTYNYAKPGPL--VQGAATRKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC--------------DKE 250
           T + F  DP+IF     + A  + +  Q  A+L+  +    +               D++
Sbjct: 59  TTVRFWADPEIFETTT-YSAETVARRLQEMAFLNKGLTITLTDRRPQTAAADAVVEGDED 117

Query: 251 IAEKYGI------------PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH 298
            AEK               P    +++P GL  Y++     ++ I   +     +  G  
Sbjct: 118 TAEKPKTAEEEAVAPTVTKPRTRTYHYPDGLIDYIKHLNRTKTPIHQSVIGFTAKGTGH- 176

Query: 299 RGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAI 355
              VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++  
Sbjct: 177 --EVEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLLKEKDG 234

Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415
            +  DD+      ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP EA
Sbjct: 235 KLSGDDIREGLAAVISVKVADPQFEGQTKTKLGNTEVKSFVQKTCNEHLGHWFEANPAEA 294

Query: 416 TKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSA 474
             +++  ++ ++ RL  RK RE V RKTA     LPGKLADC  N     E++IVEGDSA
Sbjct: 295 KIIVKKAVDSAQARLAARKARELVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSA 354

Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
           GGSAK  R+   QA+LP+RGKI+NV  A  +++  N ++  ++ A G     ++    LR
Sbjct: 355 GGSAKSGRDSMYQAILPIRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDLAKLR 414

Query: 535 YEKVII 540
           Y K+++
Sbjct: 415 YHKIVL 420


>gi|133778460|dbj|BAF49236.1| DNA gyrase B subunit [Leptospira meyeri serovar Semaranga]
          Length = 387

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 133/398 (33%), Positives = 208/398 (52%), Gaps = 17/398 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS  L V V +   +  QK+  G+P+  ++        RGT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSTYLEVEVHQDGKLHYQKYQAGVPMEDVKVIGDTT-HRGTVV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+ D  IF     F    L    +  A+L+  +       ++            F F G
Sbjct: 60  RFKADDTIFTTV-DFSFDTLSARFREIAFLNKGLLIRIEDQRKDEVAKHE-----FKFDG 113

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+ ++++   E++  +   +     EK+       E A+ +C+     I  + N I  + 
Sbjct: 114 GIVSFVEYITESKHPLHKVLHFV-GEKENVW---AEIALQYCDTYSENIFCFTNAINNNL 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQ---NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           GGTH  G R ALTR +  + +  Q    K+   +  DD+      ++S+ I +P+F  QT
Sbjct: 170 GGTHLEGFRTALTRTLNDHLKKDQILFKKQPNGLQGDDIKEGLCAVISIKIPQPQFNSQT 229

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKT 442
           K KLV+ + +  ++    +  + +  +NP    K+LE  I  S+ R   R+ R+   RKT
Sbjct: 230 KEKLVNAEVKGLMQTITGEGLNRFFEENPAVIKKILEKCILASKAREAARRARDLTRRKT 289

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
            +    LPGKLADCS+      EL++VEGDSAGGSAKQ R+R+ QA+LPL+GKILNV  A
Sbjct: 290 VLEGGGLPGKLADCSEKDPEHCELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKA 349

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
             +KI +N++I  L+  +G      ++  E LRY+K+I
Sbjct: 350 RLDKILSNEEIRTLITVMGTGIGDDEFNVEKLRYKKII 387


>gi|47094546|ref|ZP_00232208.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes str. 4b
           H7858]
 gi|47017078|gb|EAL07949.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes str. 4b
           H7858]
          Length = 158

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 57/144 (39%), Positives = 83/144 (57%), Gaps = 12/144 (8%)

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG--TKSV--YAHDEEH 596
           MTDAD DGAHI  LLLTFFY+ M  L+E   +F+  PPL+++++G   K V  YA  +E 
Sbjct: 1   MTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIALPPLYKVSRGSGKKEVIEYAWTDEE 60

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
               +++  K       I R+KGLGEM A QL ET M+ + RTL+RV ++         +
Sbjct: 61  LDSAIQKIGK----GYMIQRYKGLGEMNADQLWETTMNPDTRTLIRVRVDD----SARAE 112

Query: 657 DSINKLMGTKADERFKFIQERASF 680
             +  LMG K + R ++I++   F
Sbjct: 113 RRVATLMGDKVEPRRQWIEKHVEF 136


>gi|27530791|dbj|BAC54043.1| DNA gyrase subunit B [Gordonia rhizosphera]
          Length = 421

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 132/427 (30%), Positives = 208/427 (48%), Gaps = 37/427 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS ++ + +      + Q +    P     ++     K G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTKVELEINYGGFHWEQSYDHAKPSPL--QQGAATRKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------ 258
           T + F PDP IF     F A  + +  Q  A+L+  +    + ++   E           
Sbjct: 59  TTVRFWPDPDIFETTT-FSAETVARRLQEMAFLNKGLTITLTDNRRSEESVAAEAEMGGN 117

Query: 259 ---------------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                                    +++P GL  Y++     ++ I + +     +  G 
Sbjct: 118 GEETAEVIKSEEEKAQRAARVRTRTYHYPDGLVDYIKHLNRTKNSIHTSVIAFNAKGTGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++ 
Sbjct: 178 ---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLLKEKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             +  DD+      ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP E
Sbjct: 235 GKLTGDDIREGLAAVISVKVSDPQFEGQTKTKLGNTEVKGFVQKMSNEHLGHWFEANPAE 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  +++  ++ ++ R+  RK RE V RKTA     LPGKLADC  N     E++IVEGDS
Sbjct: 295 AKTIVKKAVDSAQARMAARKARELVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LP+RGKI+NV  A  +++  N ++  ++ A G     ++    L
Sbjct: 355 AGGSAKSGRDSMYQAILPIRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDIAKL 414

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 415 RYHKIVL 421


>gi|259018194|gb|ACV89689.1| DNA gyrase subunit B [Nocardia abscessus]
          Length = 414

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 131/420 (31%), Positives = 208/420 (49%), Gaps = 33/420 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L   +      ++Q++    P      + +   + G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLEAEIDHDGYHWTQEYKDATPGKL--IQGEATKRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T I F PDP IF     F+   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTIRFWPDPNIFETT-SFNFETVARRLQEMAFLNKGLTITLTDERVSDAEVTDEVVSETA 117

Query: 250 --------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
                   E  +     +   +++PGGL+ +++     +  I + +     +  G     
Sbjct: 118 EAPKHADAEAPQAEHKVKSRTYHYPGGLEDFVRHINRTKQPIHNSVVAFTGKGTGH---E 174

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SII 358
           +E A+ W       + ++ NTI T EGGTHE G R ALT  + +YA+  +  +    ++ 
Sbjct: 175 LEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNRYAKEKKLLKDKDGNLT 234

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+      I+SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  +
Sbjct: 235 GDDIREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTI 294

Query: 419 LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           +   +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGS
Sbjct: 295 VNKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGS 354

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  R+   QA+LPLRGKI+NV  A  +K+  N ++  ++ A G     ++    LRY K
Sbjct: 355 AKSGRDSMYQAILPLRGKIINVEKARIDKVLKNNEVQAIITAFGTGIHDEFDISKLRYHK 414


>gi|308153092|dbj|BAJ22135.1| DNA gyrase subunit B [Streptomyces olivaceus]
          Length = 407

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 131/408 (32%), Positives = 204/408 (50%), Gaps = 20/408 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL + E      GT +TF
Sbjct: 2   VSGGLHGVGVSVVNALSTRVSVEVKTDGYRWTQDYKLGVPTAPLARHEATEE-TGTSVTF 60

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE--------------KY 255
             D  +F     +    L +  Q  A+L+  +    + ++E A+                
Sbjct: 61  WADGDVFETT-DYSFETLSRRFQEMAFLNKGLTLKLTDEREEAKATAGADSAEVVDVPDE 119

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PE 314
                  +++  G+  +++     +  +  +       +      + E A+ W  +    
Sbjct: 120 ESTRTVTYHYENGIVDFVKYLNSRKGELIHQSVIDIEAEDKDRLLSAEIAMQWNTQYTEG 179

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSV 372
           + S+ N I T EGGTHE G R ALT  + +YA   +   ++  ++  +D+      I+SV
Sbjct: 180 VYSFANAIHTHEGGTHEEGFRAALTSLVNRYARDKKLLREKDDNLTGEDVREGLTAIISV 239

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
            + EP+F GQTKTKL + +A+  V+  + +    +  +NP EA  ++   I  S  R+  
Sbjct: 240 KLGEPQFEGQTKTKLGNTEAKTFVQKVVHEQLTDWFDRNPNEAADIIRKGIAASTARVAA 299

Query: 433 RKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           RK R++ R+  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP
Sbjct: 300 RKARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPMYQAILP 359

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
           +RGKILNV  A  +KI  N ++  L+ A G      +  E LRY K+I
Sbjct: 360 IRGKILNVEKARIDKILQNTEVQALISAFGTGVHEDFDIEKLRYHKII 407


>gi|308152485|dbj|BAJ22221.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|308153174|dbj|BAJ22176.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 418

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 130/424 (30%), Positives = 211/424 (49%), Gaps = 34/424 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L V +      + Q ++   P      +     + G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLDVDIKVDGYRWQQTYTDSKPGEL--VQGDPTKETG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T ++F  DP+IF     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTVSFWADPEIFETTR-YNFETVARRLQEMAFLNKGLTITLTDERAEVIDDEAAEVAEAP 117

Query: 250 ---------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                             +   +++PGGL+ Y++   ++++ I + +     +  G    
Sbjct: 118 KSAAEEAEEAAQAAPRKSKTRVYHYPGGLEDYVRHINKSKTPIHNSVVGFTAKGTGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISI 357
            +E A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +     +   +
Sbjct: 175 ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTATVNKYALEKKLLKDKDPKL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  
Sbjct: 235 TGDDIREGLAAIISVKVGEPQFEGQTKTKLGNTEVKSFVQKACNEHLAHWFEANPADAKT 294

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   +  ++ R+  RK RE V RK+A     LPGKLADC  N    +E++IVEGDSAGG
Sbjct: 295 IVNKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPEKSEIYIVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY 
Sbjct: 355 SAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDIAKLRYH 414

Query: 537 KVII 540
           K+++
Sbjct: 415 KIVL 418


>gi|211927041|dbj|BAG82773.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|211927083|dbj|BAG82794.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|211927085|dbj|BAG82795.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|308152439|dbj|BAJ22198.1| DNA gyrase subunit B [Rhodococcus globerulus]
 gi|308152441|dbj|BAJ22199.1| DNA gyrase subunit B [Rhodococcus globerulus]
 gi|308152445|dbj|BAJ22201.1| DNA gyrase subunit B [Rhodococcus rhodochrous]
 gi|308152447|dbj|BAJ22202.1| DNA gyrase subunit B [Rhodococcus rhodochrous]
 gi|308152453|dbj|BAJ22205.1| DNA gyrase subunit B [Rhodococcus rhodochrous]
 gi|308152455|dbj|BAJ22206.1| DNA gyrase subunit B [Rhodococcus rhodochrous]
 gi|308152459|dbj|BAJ22208.1| DNA gyrase subunit B [Rhodococcus rhodochrous]
 gi|308152461|dbj|BAJ22209.1| DNA gyrase subunit B [Rhodococcus rhodochrous]
 gi|308152475|dbj|BAJ22216.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|308152517|dbj|BAJ22237.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|308153136|dbj|BAJ22157.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|308153138|dbj|BAJ22158.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|308153140|dbj|BAJ22159.1| DNA gyrase subunit B [Rhodococcus sp.]
 gi|308153206|dbj|BAJ22192.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|308153208|dbj|BAJ22193.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|308153210|dbj|BAJ22194.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|308153212|dbj|BAJ22195.1| DNA gyrase subunit B [Rhodococcus globerulus]
          Length = 418

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 130/424 (30%), Positives = 211/424 (49%), Gaps = 34/424 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L V +      + Q ++   P      +     + G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLDVDIKVDGYRWQQTYTDSKPGEL--VQGDPTKETG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T ++F  DP+IF     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTVSFWADPEIFETTR-YNFETVARRLQEMAFLNKGLTITLTDERAEVIDDEAAEVAEAP 117

Query: 250 ---------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                             +   +++PGGL+ Y++   ++++ I + +     +  G    
Sbjct: 118 KSAAEEAEEAAQAAPRKSKTRIYHYPGGLEDYVRHINKSKTPIHNSVVGFTAKGTGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISI 357
            +E A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +     +   +
Sbjct: 175 ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTATVNKYALEKKLLKDKDPKL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  
Sbjct: 235 TGDDIREGLAAIISVKVGEPQFEGQTKTKLGNTEVKSFVQKACNEHLAHWFEANPADAKT 294

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   +  ++ R+  RK RE V RK+A     LPGKLADC  N    +E++IVEGDSAGG
Sbjct: 295 IVNKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPEKSEIYIVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY 
Sbjct: 355 SAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDIAKLRYH 414

Query: 537 KVII 540
           K+++
Sbjct: 415 KIVL 418


>gi|306517913|emb|CBL53380.1| gyrase B subuni [Photobacterium halotolerans]
          Length = 385

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 144/396 (36%), Positives = 223/396 (56%), Gaps = 16/396 (4%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALSD+L +T+ R   I  Q +  G P +PL       ++ GT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSDKLELTIHRHGHIHQQIYHLGEPQAPLGVVGD-SDRTGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           RI F P   IF D   F    L K  +  ++L+  V    S +++        +++ F +
Sbjct: 60  RIRFWPSDTIFTDTT-FHYEILAKRLRELSFLNSGVSIKLSDERD-------GKQDHFMY 111

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG++ +++    N++ I  + F    E++     +VE A+ W +     I  + N I  
Sbjct: 112 EGGIRAFVEHLNRNKTPIHPKAFHFAYERED--GISVEVAMQWNDSFQENIYCFTNNIPQ 169

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GG+H +G R ALTR +  + +      K  ++   DD       ++SV + +P+F+ Q
Sbjct: 170 RDGGSHLAGFRGALTRTLNNFMDAEGYTKKAKVATSGDDAREGLTAVVSVKVPDPKFSSQ 229

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRK 441
           TK KLVS + +  VE+A+ +    YL++NP +A  +   +I+ S  R   R+ R    RK
Sbjct: 230 TKDKLVSSEVKPAVESAMGEKLSEYLLENPTDAKIVCGKIIDASRAREAARRAREMTRRK 289

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  
Sbjct: 290 GALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 349

Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYE 536
           A  +K+ ++Q++  L+ A+GC   R +Y  + LRY 
Sbjct: 350 ARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYH 385


>gi|19909615|dbj|BAB87003.1| DNA gyrase subunit B [Marinomonas vaga]
          Length = 392

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 132/401 (32%), Positives = 217/401 (54%), Gaps = 14/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+ + +T+ +   ++ Q ++ G+P +PL    +  + +G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSETVTLTIRKNGKVYEQHYAHGVPQAPLAVIGE-SDGKG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F+P  + F +   F    L K  +  ++L+  V      ++         ++E F 
Sbjct: 60  TTVHFKPSAETFSNIL-FVYDILAKRLRELSFLNSGVAIHLKDER-------TGKEEFFN 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGLK++++    N+  I+         +       VE A+ W E     I  Y N I 
Sbjct: 112 YEGGLKSFVEHLNTNKQPINDIFHFICQREDLEDGIAVEVALQWNEGFQENIYCYTNNIP 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  + E      K+ ++   DD       I+SV + +P+F+ 
Sbjct: 172 QRDGGTHLAGFRGALTRTLNNFIEAEGLAKKQKVATTGDDCREGLTAIVSVKVPDPKFSS 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNR 440
           QTK KLVS + +  VE  +   F  +L++ P EA  ++  +++ +  R   R+      R
Sbjct: 232 QTKDKLVSSEVKTAVEQEMSKRFAEFLLEKPNEAKTIVNKMLDAARAREAARRARDMTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +E+++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV 
Sbjct: 292 KGALDIAGLPGKLADCQEKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVII 540
            A  +K+ ++ ++  L+ ALGC         + LRY  ++I
Sbjct: 352 KARFDKMLSSAEVGTLITALGCGIGRDEFNADKLRYHSIVI 392


>gi|259018176|gb|ACV89680.1| DNA gyrase subunit B [Nocardia cerradoensis]
          Length = 414

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 130/420 (30%), Positives = 212/420 (50%), Gaps = 33/420 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS  +   + R    +SQ++    P   ++   +  ++ G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSRMVTEIDRDGFHWSQEYKDAKPGKLVK--GEPTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T   F  DP +F     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTQRFWADPDVFETTT-YNFETISRRLQEMAFLNKGLTITLTDERVSEAEVTDEVVSETA 117

Query: 250 ---EIAEKYGIP-----EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
              +  E    P     +   +++PGGL+ +++     +  I + + +  ++  G     
Sbjct: 118 EAPKHDEGTATPPEPKVKTRTYHYPGGLEDFVKHINRTKQAIHNTVVSFTSKGTGH---E 174

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SII 358
           +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++ 
Sbjct: 175 LEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLT 234

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+      I+SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  +
Sbjct: 235 GDDIREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTI 294

Query: 419 LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           ++  +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGS
Sbjct: 295 VQKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGS 354

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  R+   QA+LPLRGKI+NV  A  +K+  N ++  ++ A G     ++    LRY K
Sbjct: 355 AKSGRDSMYQAILPLRGKIINVEKARIDKVLKNNEVQSIITAFGTGIHDEFDISKLRYHK 414


>gi|12644440|sp|Q44080|GYRB_ACIJU RecName: Full=DNA gyrase subunit B
 gi|4514423|dbj|BAA75410.1| DNA gyrase subunit B [Acinetobacter junii]
          Length = 388

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 141/400 (35%), Positives = 219/400 (54%), Gaps = 17/400 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +LH+T+ R   I  Q++  G P  PL+   +  +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSKKLHLTIQRAGQIHEQEYCHGDPQYPLKVVGET-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  ++   +  F    L +  +  ++L+  V+     ++   E         + 
Sbjct: 60  TTVRFWPS-ELTFSQTIFSVDILARRLRELSFLNAGVRIVLRDERVNLENV-------YD 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   E ++ ++           G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLSEFVKYINEGKTHLNEIFHFTTDADNGI---GVEVALQWNDSYQENVRCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  +++  DD       I+SV + +P+F+ 
Sbjct: 169 QKDGGTHLAGFRAALTRGLNSYMENENLLKKEKVAVSGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNR 440
           QTK KLVS + +  VE A+   F  YL++NP  A  +   +I+ +  R   R+      R
Sbjct: 229 QTKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARRAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV 
Sbjct: 289 KSALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY K+I
Sbjct: 349 RARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKII 388


>gi|27544684|dbj|BAC55037.1| DNA gyrase B subunit [Legionella brunensis]
          Length = 389

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 140/401 (34%), Positives = 223/401 (55%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+ELH+ + R   I  Q +  G+P +PL    +  N  G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELHLLIRRNGKIHEQHYRNGVPDAPLAVTGEA-NTTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T++ F+P    F +   F    L K  +  ++L+  V      ++         +++ F 
Sbjct: 60  TQVWFKPSANTFTNI-EFHYDILAKRLRELSFLNSGVCIHLYDER-------TQKRDTFR 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG++ +++    N++ I   +FT   ++       VE A+ W +     I  + N I 
Sbjct: 112 YEGGIQAFVEHLNRNKTPIMPVVFTLLADRDNI---AVELAMQWNDSFQETIFCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  Y E      K  +    DD       +LSV + +P+F+ 
Sbjct: 169 QRDGGTHLAGFRAALTRTLNTYIENEGFAKKAKVVTTGDDAREGLTAVLSVKVSDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE+ + +  + +L++NP  A  ++  +I+ +  R   R+ R    R
Sbjct: 229 QTKDKLVSSEVKAAVESLVAEKLNDFLLENPAIAKSVVGKMIDAARAREAARRAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ R+R  QA+LPL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC     +Y  + +RY ++II
Sbjct: 349 KARFDKMLSSQEVATLITALGCGIGPDEYDPDKIRYHRIII 389


>gi|259018172|gb|ACV89678.1| DNA gyrase subunit B [Nocardia cyriacigeorgica]
 gi|323362413|gb|ADX42119.1| DNA gyrase beta subunit [Nocardia cyriacigeorgica]
          Length = 415

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 132/421 (31%), Positives = 209/421 (49%), Gaps = 33/421 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L   V      ++Q++    P      + +   + G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLEAEVDHAGYHWTQEYKDATPGKL--IQGEPTTRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T I F PDP IF     F+   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTIRFWPDPNIFETT-SFNFETVARRLQEMAFLNKGLTITLTDERVSDTEVTDEVVSETA 117

Query: 250 --------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
                   E  +     +   +++PGGL+ +++     +  I + +     +  G     
Sbjct: 118 EAPKHADAEAQQTEHKVKSRTYHYPGGLEDFVRHINRTKQPIHNSVVAFTGKGTGH---E 174

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SII 358
           +E A+ W       + ++ NTI T EGGTHE G R ALT  + +YA+  +  +    ++ 
Sbjct: 175 LEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNRYAKEKKLLKDKDGNLT 234

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+      I+SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  +
Sbjct: 235 GDDIREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTI 294

Query: 419 LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           +   +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGS
Sbjct: 295 VNKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGS 354

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  R+   QA+LPLRGKI+NV  A  +K+  N ++  ++ A G     ++    LRY K
Sbjct: 355 AKSGRDSMYQAILPLRGKIINVEKARIDKVLKNNEVQAIITAFGTGIHDEFDISKLRYHK 414

Query: 538 V 538
           +
Sbjct: 415 I 415


>gi|187471793|gb|ACD11207.1| DNA gyrase B subunit [Nocardia aobensis]
 gi|259018186|gb|ACV89685.1| DNA gyrase subunit B [Nocardia aobensis]
          Length = 415

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 130/421 (30%), Positives = 215/421 (51%), Gaps = 33/421 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS  +   + R    +SQ++    P   ++   +  ++ G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSRMVTEIDRDGFHWSQEYKDAKPGKLVK--GEPTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC---------DKEIAEKY 255
           T   F  DP +F     ++   + +  Q  A+L+  +    +          D+ ++E  
Sbjct: 59  TTQRFWADPDVFETTT-YNFETISRRLQEMAFLNKGLTITLTDQRVSEAEVTDEVVSETA 117

Query: 256 GIPEKE--------------EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
             P+ +               +++PGGL+ +++     +  I + + +  ++  G     
Sbjct: 118 EAPKHDEGSAAPPEPKVKTRTYHYPGGLEDFVKHINRTKQAIHNTVVSFTSKGTGH---E 174

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SII 358
           +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++ 
Sbjct: 175 LEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLT 234

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+      I+SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  +
Sbjct: 235 GDDIREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTI 294

Query: 419 LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           ++  +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGS
Sbjct: 295 VQKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGS 354

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K
Sbjct: 355 AKSGRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDISKLRYHK 414

Query: 538 V 538
           +
Sbjct: 415 I 415


>gi|313574651|emb|CBX26178.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
          Length = 392

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 143/401 (35%), Positives = 215/401 (53%), Gaps = 14/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS  L + + R   +    F+ G+  +PL    +   + G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSVWLKLRIRRNGKVHEIGFTHGVADAPLSVIGEYEGRSG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF   P+ F     +D   L    +  A+L+  V+   +  +    K     +EE  
Sbjct: 61  TEVTFLASPQTF-TMTDYDYGTLEHRLRELAFLNSGVRILLTDKRHSDVK-----QEELL 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GGL+ +++     +  +  +    K EK G    TVE A+ W +   E    + N I 
Sbjct: 115 YDGGLEAFVRYLDRAKKPLVDKPVAIKGEKDGI---TVEVALWWNDSYHENVLCFTNNIP 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  YAE +    K  +S+  +D       ILSV + +P+F+ 
Sbjct: 172 QRDGGTHMAGFRAALTRQVTSYAETSGILKKEKVSLQGEDCREGLTAILSVKVPDPKFSS 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNR 440
           QTK KLVS + +  VE+ + +    +L ++P +A  L+ + V         R+ +    R
Sbjct: 232 QTKDKLVSSEVRPVVESLVNEALSTWLEEHPSDARILVGKVVEAAVAREAARKARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADCS+     +ELF+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 292 KGALDIASLPGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVII 540
            A  +K+ ++Q+I  L+ ALG          + LRY K+II
Sbjct: 352 RARFDKMLSSQEIGTLITALGTSIGKDEFNADKLRYHKIII 392


>gi|29652875|gb|AAO87407.1| DNA gyrase B [Listeria monocytogenes]
          Length = 176

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 82/178 (46%), Positives = 111/178 (62%), Gaps = 2/178 (1%)

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A 
Sbjct: 1   LEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKAR 60

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ M
Sbjct: 61  LDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYM 120

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
             L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+KGLG
Sbjct: 121 RPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYKGLG 176


>gi|259018130|gb|ACV89657.1| DNA gyrase subunit B [Nocardia otitidiscaviarum]
          Length = 414

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 133/420 (31%), Positives = 214/420 (50%), Gaps = 33/420 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS  +HV + R    +SQ++    P   ++       + G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTRMHVEIDRDGYHWSQEYKDSKPGKLIK--GDPTKRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T  TF  DP IF     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTQTFWADPNIFETTV-YNFETVARRLQEMAFLNKGLTITLTDERVSEGEITDEVVSETA 117

Query: 250 ---EIAEKYGIP-----EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
              +  ++   P     +   +++PGGL+ Y++     ++ I + I +   +  G     
Sbjct: 118 EAPKHLDENTPPAEPKVKTRTYHYPGGLEDYVKHINRTKTPIHNSIVSFTGKGTGH---E 174

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SII 358
           +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++ 
Sbjct: 175 LEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLT 234

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+      I+SV + +P+F GQTKTKL + + +  V+    +   H+   NP +A  +
Sbjct: 235 GDDIREGLAAIVSVKVADPQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTI 294

Query: 419 LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           ++  +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGS
Sbjct: 295 VQKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGS 354

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  R+   QA+LPLRGKI+NV  +  +K+  N ++  ++ A G     ++    LRY K
Sbjct: 355 AKSGRDSMYQAILPLRGKIINVEKSRIDKVLKNNEVQSIITAFGTGIHDEFDISKLRYHK 414


>gi|18147147|dbj|BAB83054.1| DNA gyrase subunit B [Halomonas marina]
          Length = 389

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 145/401 (36%), Positives = 216/401 (53%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+EL +T+ RQ  +  Q +  G+P +PL          G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELKLTIWRQGKVHEQIYRHGVPEAPLAVVGNTEK-SG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F+P P  FG+   F    L K  +  ++L+  V      ++   E       E F+
Sbjct: 60  TLVRFKPSPLTFGNI-AFHYEILAKRLRELSFLNSGVAIRLIDERSGKE-------ELFH 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGLK ++     N++ ++         + G     VE A+ W +     I  Y N I 
Sbjct: 112 YEGGLKAFVDHLNTNKAALNPVFHFEMEREDGI---GVEVAMQWNDAFSENIFCYTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  Y E      K  +    DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLAGFRAALTRTLNSYIEAEGLLKKSKVGTTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNR 440
           QTK KLVS + +  VE  +   F  YL++ P EA  ++  +++ +  R   RK      R
Sbjct: 229 QTKDKLVSSEVKTAVEQEMGRLFSEYLIEKPNEAKAIVNKMLDAARAREAARKARDMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQEKDPSLSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++ ++  L+ ALGC   R ++  + LRY  VII
Sbjct: 349 KARFDKMLSSAEVGTLITALGCGIGREEFNPDKLRYHSVII 389


>gi|317420224|emb|CBW30269.1| gyrase subunit B [Psychrobacter aquimaris]
          Length = 385

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 140/397 (35%), Positives = 219/397 (55%), Gaps = 17/397 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS +L + + R+   + Q ++ G+P + +++ E   +K GT+I
Sbjct: 1   YKVSGGLHGVGVSVVNALSKKLEMNIWREGYHYHQTYTDGVPDADIQQMEPT-DKTGTQI 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P   +F     F+   L K  +  ++L+  V+   + ++       I ++ EF   G
Sbjct: 60  RFYPSSDVFTGTI-FEYDILAKRLRELSFLNSGVRIVLTDER-------IDKRHEFEHKG 111

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           GL  ++      +  I+        +  G    +VE A+ W +    ++  + N I   +
Sbjct: 112 GLSEFVSYINAGKDGINEVFHFVSEQDDGI---SVEVALQWTDTYNEKVLCFTNNIPQRD 168

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH SG R ALTRG+  Y +      K  +    DD       I+SV + +P+F+ QTK
Sbjct: 169 GGTHLSGFRSALTRGLNSYMDRENLFKKEKVVATGDDAREGLTAIVSVKVPDPKFSSQTK 228

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTA 443
            KLVS + +  VE+A+ D F+ YL++NP     +   +I+ +  R   RK      RKT 
Sbjct: 229 DKLVSSEVKSAVESAMHDKFNDYLLENPSAGKAIANKIIDAARARDAARKAREMTRRKTT 288

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +     +EL+IVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A 
Sbjct: 289 LDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRSRKTQAILPLKGKILNVERAR 348

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            +K+ ++ ++ +L+ ALGC     +Y  + +RY K+I
Sbjct: 349 FDKMLSSAEVGNLITALGCGIGPDEYNPDKVRYHKII 385


>gi|126035198|gb|ABN72352.1| gyrase B subunit [Aeromonas veronii]
          Length = 382

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 146/394 (37%), Positives = 221/394 (56%), Gaps = 17/394 (4%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + 
Sbjct: 1   QVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVR 59

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F P P IF D   F    L K  +  ++L+  V      +++  E         F + GG
Sbjct: 60  FWPSPAIFSDTL-FHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------AHFCYEGG 111

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           +K +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +G
Sbjct: 112 IKAFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDG 168

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH  G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK 
Sbjct: 169 GTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKD 228

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444
           KLVS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+
Sbjct: 229 KLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGAL 288

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  
Sbjct: 289 DIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARF 348

Query: 505 EKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537
           +K+ ++Q++  L+ ALGC   R +Y  + LRY  
Sbjct: 349 DKMISSQEVGTLITALGCGIGRDEYNPDKLRYHN 382


>gi|18147163|dbj|BAB83062.1| DNA gyrase subunit B [Alcanivorax sp. Oha-1]
          Length = 381

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 146/393 (37%), Positives = 209/393 (53%), Gaps = 18/393 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS+EL +T+ R   +  Q +  G+P  PLE      +  GT I F
Sbjct: 1   VSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQVYRHGVPAMPLEVVG-TTDSSGTAIHF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           RP P+ F +   F    L K  +  ++L+  V+     ++   E       + F + GGL
Sbjct: 60  RPSPETFTNI-KFHYDILAKRLRELSFLNSGVRIHLLDERNGEE-------DVFEYEGGL 111

Query: 270 KTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEG 327
             ++    EN++ ++         E+ G     VE A+ W +   E    + N I   +G
Sbjct: 112 SAFVSYLNENKTPLNQVFHFQFDREEDGI---AVEVAMQWNDSYQENLFCFTNNIPQRDG 168

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH +G R ALTR +  Y E      K   +   DD       ++SV + +P+F+ QTK 
Sbjct: 169 GTHLAGFRAALTRTLNSYMEKEGLLKKEKANPTGDDAREGLTAVISVKVPDPKFSSQTKD 228

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAI 444
           KLVS + +  VE  + + F  YL++NP EA  +   +I+ +  R   RK      RK A+
Sbjct: 229 KLVSSEVKSAVEQTMGELFQDYLLENPQEAKAISSKIIDAARARDAARKAREMTRRKGAL 288

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC Q     +EL+IVEGDSAGGSAKQ R+R NQA+LPL+GKILNV  A  
Sbjct: 289 DIAGLPGKLADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARF 348

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYE 536
           +K+ ++Q++  L+ ALGC         E LRY 
Sbjct: 349 DKMLSSQEVGTLITALGCGIGRDEYNVEKLRYH 381


>gi|19909605|dbj|BAB86998.1| DNA gyrase subunit B [Halomonas halmophila]
          Length = 389

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 142/401 (35%), Positives = 219/401 (54%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+EL +T+ RQ  +  Q +  G+  SPL        + G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELKLTIWRQGQVHEQVYRHGVAESPLSVVG-TTEQSG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           +R+ FRP  + F +   F    L K  +  ++L+  V    + ++   E       E F+
Sbjct: 60  SRVHFRPSTETFHNI-EFHYDVLAKRLRELSFLNSGVAIRLTDERSGKE-------ELFH 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL+ ++     N+++++         + G     VE A+ W +     I  Y N I 
Sbjct: 112 YEGGLRAFVDHLNTNKTVLNPVFHFNVEREDGV---GVEVAMQWNDTFAENIFCYTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R +LTR +  Y E      K  +S   DD       I+SV + +P+F+ 
Sbjct: 169 QGDGGTHLAGFRASLTRTLNHYIEAEGLLKKAKVSTSGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNR 440
           QTK KLVS + +  VE  +   F  YLV+ P EA  ++  +++ +  R   RK      R
Sbjct: 229 QTKDKLVSSEVKTAVEQEMGRQFSDYLVERPNEAKAIVNKMLDAARAREAARKARDMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++V+GDSAGGSAKQ R+R  QA+LPL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQEKDPSLSELYLVQGDSAGGSAKQGRDRRTQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++ ++  L+ ALGC   R ++  + LRY  +II
Sbjct: 349 KARFDKMLSSAEVGTLITALGCGIGREKFDPDKLRYHSIII 389


>gi|317420192|emb|CBW30253.1| gyrase B subunit [Pseudoalteromonas antarctica]
          Length = 385

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 134/391 (34%), Positives = 213/391 (54%), Gaps = 15/391 (3%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS++L +T+ R+  +  Q ++ G+P +PL       +  GT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKLKLTIRREGKLHEQTYTHGVPDAPLAVIGDA-DTTGTEL 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F    L K  +  ++L+  V    + ++E        + + F + G
Sbjct: 60  RFWPSDQTFTNL-DFHYDILAKRLRELSFLNSGVSIILNDERE------ENKSDHFKYEG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G++ +++    N++ I   +F     ++      VE ++ W +     I  + N I   +
Sbjct: 113 GIRAFVEYLNRNKTPIHKGVFHFTHTRE-EDGIVVEVSMQWNDAYQENIYCFTNNIPQRD 171

Query: 327 GGTHESGLRVALTRGIKKYA----ELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
           GGTH +G R ALTR +  Y        + K   +   DD       ++SV + +P+F+ Q
Sbjct: 172 GGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKFSSQ 231

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRK 441
           TK KLVS + +  VE A+ + F  +L+++P +A  ++  +I+ S  R   RK R    RK
Sbjct: 232 TKDKLVSSEVKSAVEQAMAEKFTEFLLEHPTDAKIVVGKIIDASRAREAARKAREMTRRK 291

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  
Sbjct: 292 GAMDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 351

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           A  +K+ ++Q++  L+ ALGC         +
Sbjct: 352 ARFDKMLSSQEVATLITALGCGIGRDEYNPE 382


>gi|259018102|gb|ACV89643.1| DNA gyrase subunit B [Nocardia wallacei]
          Length = 411

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 127/417 (30%), Positives = 208/417 (49%), Gaps = 30/417 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS  +   + R    +SQ++    P   ++   +   + G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTRMVTEIDRDGFHWSQEYKDSKPGKLVK--GEPTKRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T   F  DP IF     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTQRFWADPAIFETTT-YNFETIARRLQEMAFLNKGLTITLTDERVSDAEITDEVVSDTA 117

Query: 250 -----EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
                +        +   +++PGGL  +++    ++  I + + +   +  G     +E 
Sbjct: 118 EAPKADAEPVEHKVKTRTYHYPGGLADFVKHINRSKQPIHNTVVSFTGKGTGH---ELEV 174

Query: 305 AIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDD 361
           A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++  DD
Sbjct: 175 AMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLIKDKDGNLTGDD 234

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
           +      I+SV + +P+F GQTKTKL + + +  V     +   H+L  NP +A  +++ 
Sbjct: 235 IREGLAAIVSVKVSDPQFEGQTKTKLGNTEVKSFVHRTCNEHLAHWLEANPADAKTIVQK 294

Query: 422 VIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
            +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGSAK 
Sbjct: 295 AVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPRLSEIYIVEGDSAGGSAKS 354

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
            R+   QA+LP+RGKI+NV  +  +K+  N ++  ++ A G     ++    LRY K
Sbjct: 355 GRDSMYQAILPIRGKIINVEKSRIDKVLKNNEVQSIITAFGTGIHDEFDISKLRYHK 411


>gi|259018156|gb|ACV89670.1| DNA gyrase subunit B [Nocardia flavorosea]
          Length = 415

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 133/421 (31%), Positives = 207/421 (49%), Gaps = 34/421 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L   +      +SQ +   +P      +       G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSSRLEAEIDTDGYHWSQTYKDAVPGQL--VQGDATKATG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T I F  DP +F     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTIRFWADPAVFETTT-YNFETVSRRLQEMAFLNKGLTIVLTDERVSATEVTDEVVSETA 117

Query: 250 ---EIAEKYGIPEKEE------FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
              +  E    P  E       +++PGGL+ +++     +  I + +     +  G    
Sbjct: 118 EAPKHDEGGEKPALEHKVKTRTYHYPGGLEDFVRHINRTKQPIHNSVVGFNGKGPGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SI 357
            +E A+ W       + ++ NTI T EGGTHE G R ALT  + +YA+  +  +    ++
Sbjct: 175 ELEVALQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNRYAKEKKLLKEKDGNL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  
Sbjct: 235 TGDDIREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRACNEHLAHWFEANPADAKT 294

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   +  ++ RL  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGG
Sbjct: 295 IVNKAVSSAQARLAARKARELVRRKSATDIGGLPGKLADCRSKDPSKSEIYIVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +K+  N ++  ++ A G     ++    LRY 
Sbjct: 355 SAKSGRDSMYQAILPLRGKIINVEKARIDKVLKNAEVQAIITAFGTGIHDEFDIAKLRYH 414

Query: 537 K 537
           K
Sbjct: 415 K 415


>gi|11078717|dbj|BAB17363.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 388

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 144/400 (36%), Positives = 218/400 (54%), Gaps = 17/400 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+EL +T+ R+  ++ Q +  G+P +PL    +  +  G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELLLTIRREGKVWEQLYRHGVPQAPLAAVGET-DTSG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+I F+P  + F +   F    L K  +  ++L+  V      ++   E       E F 
Sbjct: 60  TQIHFKPSAETFQNIH-FSWDILAKRLRELSFLNSGVGIVLRDERTAKE-------ELFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  ++     N++ ++           G     VE A+ W +     I  + N I 
Sbjct: 112 YEGGLSAFVAYLNTNKTAVNQVFHFNVQRDDGV---GVEVALQWNDSFNENILCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  Y E      K  I+   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLAGFRSALTRNLNNYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  +   F  +L+++P EA  ++  + + +  R   RK R    R
Sbjct: 229 QTKDKLVSSEVKTAVEQEMGKYFADFLLEHPNEAKAVVGKMNDAARAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR  QA+LPL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 349 KARFDKMLSSQEVGTLITALGCGIGREEYNIDKLRYHNII 388


>gi|317420194|emb|CBW30254.1| gyrase B subunit [Pseudoalteromonas elyakovii]
          Length = 381

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 136/389 (34%), Positives = 212/389 (54%), Gaps = 15/389 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS++L +TV R+  +  Q ++ G+P +PL          GT + F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLKLTVRREGKLHEQFYTMGVPDAPLAVIGD-SETTGTELRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F +   F    L K  +  ++L+  V    + ++E        + + F + GG+
Sbjct: 60  WPSAETFTNL-DFHYDILAKRLRELSFLNSGVSIILNDERE------ENKSDHFKYEGGI 112

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           + +++    N++ I   +F    E++     +VE ++ W +     I  + N I   +GG
Sbjct: 113 QAFVEYLNRNKTPIHKGVFHFTHERE-EDGISVEVSMQWNDAYQENIYCFTNNIPQRDGG 171

Query: 329 THESGLRVALTRGIKKYA----ELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           TH +G R ALTR +  Y        + K   +   DD       ++SV + +P+F+ QTK
Sbjct: 172 THLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKFSSQTK 231

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTA 443
            KLVS + +  VE A+ + F  +L++NP +A  ++  +I+ S  R   RK R    RK A
Sbjct: 232 DKLVSSEVKSAVEQAMAEKFTEFLLENPTDAKIVVGKIIDASRAREAARKAREMTRRKGA 291

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A 
Sbjct: 292 MDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 351

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREED 532
            +K+ ++Q++  L+ ALGC         +
Sbjct: 352 FDKMLSSQEVATLITALGCGIGRDEYNPE 380


>gi|148616470|gb|ABQ96978.1| GyrB [Nocardiopsis rosea]
          Length = 391

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 130/397 (32%), Positives = 209/397 (52%), Gaps = 10/397 (2%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
            +Y +SGGLHGVG+SVVNALS  L V + R   ++ Q++    P + L K E      GT
Sbjct: 1   KSYAVSGGLHGVGVSVVNALSSRLEVEIRRDGHVWRQQYQLTRPTADLSKDESTEE-TGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           +ITF  D  IF     ++   L +  Q  A+L+  +      ++        P    +++
Sbjct: 60  QITFWADGSIFETTT-YNFETLARRMQETAFLNKGLSITIRDER-PEFTGDAPVVHTYHY 117

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
             GL  +++     +    + I + + E  G    +VE A+ W +     + ++ NTI T
Sbjct: 118 EDGLADFVRHLNAAKDPAHASIISFEEEGDGI---SVEIAMQWNQSYTSSVHTFANTINT 174

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            EGGTHE G R ALT  + +YA   +   ++  ++  DD+      I+SV + +P+F GQ
Sbjct: 175 AEGGTHEEGFRAALTSIVNRYARDQRLVREKEDNLTGDDIREGLTAIISVKLADPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TKTKL + +A+  V+    +    +  +NP EA  ++    + +  R+  R+ R+   RK
Sbjct: 235 TKTKLGNTEAKSFVQRVTNEHLRDWFERNPGEAKDIVTKANQAARARVAARQARDLTRRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           T +    LPGKL+DC       +E++IVEGDSAGGSAK  R+   QA+LP+RGKILNV  
Sbjct: 295 TLLESTSLPGKLSDCQSTEPEKSEVYIVEGDSAGGSAKGGRDPHYQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538
           +  ++I  N ++  ++ A+G     ++  E LRY K+
Sbjct: 355 SRIDRILKNNEVQAIITAMGTGVHDEFDIEKLRYHKI 391


>gi|2196828|gb|AAB80831.1| DNA gyrase beta-subunit [Shewanella algae]
          Length = 419

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 136/398 (34%), Positives = 216/398 (54%), Gaps = 15/398 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T L   GKF++ + ++  G   VG+SVVNALS++L +T+ R   ++ Q +  G P 
Sbjct: 1   EVIMTVLRPLGKFEDPSKDVYVGWPRVGVSVVNALSEKLQLTIRRDGKVYEQFYKHGEPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            P+++  +     GT I F P  + F D   F    L K  +  ++L+  V      +++
Sbjct: 61  EPIKEIGEATK-TGTEIRFWPSHETFTDT-EFHYELLAKRIRELSFLNSGVGIRLIDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + E F++ GG+K +++    N++ ++ ++F    E++     TVE A+ W +
Sbjct: 119 N-------KYEFFHYEGGIKAFVEYLNRNKTPVNKDVFHFSQERED--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R ALTR +  Y E      K   +   DD      
Sbjct: 170 GFQESIFCFTNNIPQRDGGTHLAGFRAALTRNLNNYMENEGFNKKGKTNATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            ++SV + +P+F+ QTK KLVS + +  VE  + +  + YL++NP +A  ++  +I+ + 
Sbjct: 230 AVVSVKVPDPKFSSQTKDKLVSSEVKGAVEQTMGEKLNDYLLENPADAKMIVGKIIDAAR 289

Query: 428 ERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK R    RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           QA+LPL+GKI NV  A  +K+   Q++   + ALGC  
Sbjct: 350 QAILPLKGKIFNVEKARFDKMLFFQEVATFITALGCGI 387


>gi|308224984|gb|ADO24084.1| DNA gyrase beta subunit [Nocardia sp. W9800]
 gi|308224986|gb|ADO24085.1| DNA gyrase beta subunit [Nocardia sp. W9912]
 gi|308224988|gb|ADO24086.1| DNA gyrase beta subunit [Nocardia sp. W9915]
 gi|308224990|gb|ADO24087.1| DNA gyrase beta subunit [Nocardia sp. W9988]
          Length = 415

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 130/421 (30%), Positives = 208/421 (49%), Gaps = 34/421 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS  L   +      ++Q++    P      + +   + G
Sbjct: 1   SEAYSVSGGLHGVGISVVNALSTRLEAEIDNDGYHWTQEYKDSKPGKL--VQGEATKRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK---------- 254
           T I F PDP+IF     F+   + +  Q  A+L+  +    + ++    +          
Sbjct: 59  TTIRFWPDPEIFETTT-FNFETVARRLQEMAFLNKGLTITLTDERVSESEVTDEVVSDTA 117

Query: 255 --------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                             +   +++PGGL+ +++     +  I + +     +  G    
Sbjct: 118 EAPKHLDENAPVAEEPKVKVRTYHYPGGLEDFVKHLNRTKQPIHNSVVGFTGKGTGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SI 357
            +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++
Sbjct: 175 ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+SV I +P+F GQTKTKL + + +  V+    +   H+   NP +A  
Sbjct: 235 TGDDIREGLAAIVSVKISDPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKT 294

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           +++  +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGG
Sbjct: 295 IVQKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY 
Sbjct: 355 SAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYH 414

Query: 537 K 537
           K
Sbjct: 415 K 415


>gi|317420200|emb|CBW30257.1| gyrase B subunit [Pseudoalteromonas issachenkonii]
          Length = 388

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 144/397 (36%), Positives = 222/397 (55%), Gaps = 16/397 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS++L +T+ R+  +  Q ++ G+P +PL          GT I F 
Sbjct: 1   SGGLHGVGVSVVNALSEKLKLTIRREGKLHEQFYTMGVPDAPLAVIGD-SETNGTEIRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F    L K  +  ++L+  V    S ++E        + + F + GG++
Sbjct: 60  PSGETFTNL-DFHYDILAKRLRELSFLNSGVSIILSDERE------ENKSDHFKYEGGIR 112

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++    N++ +   +F    E++     +VE ++ W +     I  + N I   +GGT
Sbjct: 113 AFVEYLNRNKTPVHKGVFHFTHERE-EDGISVEVSMQWNDAFQENIYCFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYA----ELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           H +G R ALTR +  Y        + K   +   DD       ++SV + +P+F+ QTK 
Sbjct: 172 HLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKFSSQTKD 231

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444
           KLVS + +  VE A+ + F  +L++NP++A  ++  +I+ +  R   RK RE   RK A+
Sbjct: 232 KLVSSEVKSAVEQAMAEKFTEFLLENPLDAKIVVGKIIDAARAREAARKARELTRRKGAM 291

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC +      EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  
Sbjct: 292 DLAGLPGKLADCQEKDPAQXELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARF 351

Query: 505 EKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
           +K+ ++Q++  L+ ALGC   R +Y  E LRY ++II
Sbjct: 352 DKMLSSQEVATLITALGCGIGRDEYNPEKLRYHRIII 388


>gi|324331802|gb|ADY38687.1| DNA gyrase subunit B [Ignatzschineria sp. NML 100429]
          Length = 376

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 136/388 (35%), Positives = 214/388 (55%), Gaps = 17/388 (4%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS +L +T+ +   I  Q+++ G P  PL +  +  +K GT + F+P   +
Sbjct: 1   GVGVSVVNALSSKLKLTIYKHGKIHEQEYTVGEPDYPLREIGET-DKNGTTVYFKPSKDV 59

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F D   F+   L K  +  A+L+  ++     ++   E       E F + GG+K Y++ 
Sbjct: 60  FTDI-DFEFDILFKRLRELAFLNSGIRIVLKDERTDRE-------EIFEYEGGIKAYVEL 111

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             +NR+ I  +IF    ++       VE A  W +     +  Y N I   +GGTH +G 
Sbjct: 112 INKNRNEIHPDIFYCDCQRDNI---NVEIAFQWTDGYQESVFCYTNNIPQSDGGTHLAGF 168

Query: 335 RVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R A+TR + +Y +     + +      DD       I+SV I  P+F+ QTK KLVS + 
Sbjct: 169 RAAMTRTLNRYMQDEGLLKKVKVATTGDDAREGLTAIISVKIPGPKFSSQTKEKLVSSEV 228

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPG 451
           +  V++ L +  + +L+++P +A  +   +I+ +  R   RK RE   RK+A+    LPG
Sbjct: 229 RPVVDSVLAERLEQFLLEHPDDAKAITSKIIDAAMAREAARKARENTRRKSALDIAGLPG 288

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +ELFIVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +++ ++ 
Sbjct: 289 KLADCQEKDPAQSELFIVEGDSAGGSAKQGRSRKFQAILPLKGKILNVERARFDRMISSA 348

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKV 538
           +I  L+ ALGC   R ++  + LRY ++
Sbjct: 349 EIGTLITALGCGIGRDEFDPDKLRYHRM 376


>gi|218662277|ref|ZP_03518207.1| DNA topoisomerase IV subunit B [Rhizobium etli IE4771]
          Length = 200

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 98/156 (62%), Positives = 113/156 (72%), Gaps = 14/156 (8%)

Query: 3   DDSIDLFSTLP-PQSQGSSEKLKKSGEIPDSPAFANQSA-------------SDNYDASS 48
           DDS DLFS LP  + +  ++K     E   + A A+ +              SD Y ASS
Sbjct: 45  DDSNDLFSGLPLSEKREGAQKPVAPTERSAASAPADVTPPAASARPAPTGSNSDEYGASS 104

Query: 49  IRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLT 108
           IR+LEGLEPVRMRPGMYIGGTDEKALHHLF+EVIDNAMDE +AG+AN IEV LD  G+LT
Sbjct: 105 IRVLEGLEPVRMRPGMYIGGTDEKALHHLFAEVIDNAMDEAVAGHANFIEVHLDLQGYLT 164

Query: 109 VVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144
           V DNGRGIPVENHP+ P KSTLE+I+T LHAGGKFD
Sbjct: 165 VTDNGRGIPVENHPQVPGKSTLEVIMTKLHAGGKFD 200


>gi|75763519|ref|ZP_00743230.1| Topoisomerase IV subunit B [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74488990|gb|EAO52495.1| Topoisomerase IV subunit B [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 156

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 57/144 (39%), Positives = 80/144 (55%), Gaps = 12/144 (8%)

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKS----VYAHDEEH 596
           MTDAD DGAHI  LLLTFFY+ M  LIE   +F+  PPL+++++G        YA  +E 
Sbjct: 1   MTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEE 60

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
              + ++  K       + R+KGLGEM A QL ET M+   RTL+RV+I+         +
Sbjct: 61  LDGVTKKVGK----GYMLQRYKGLGEMNADQLWETTMNPETRTLIRVKIDD----AARAE 112

Query: 657 DSINKLMGTKADERFKFIQERASF 680
             +  LMG K + R K+I+    F
Sbjct: 113 RRVTTLMGDKVEPRRKWIERNVQF 136


>gi|259018100|gb|ACV89642.1| DNA gyrase subunit B [Nocardia xishanensis]
          Length = 415

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 131/421 (31%), Positives = 209/421 (49%), Gaps = 34/421 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS  L   V      ++Q++    P   ++   +   + G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSRLEAEVDHDGYHWTQEYKDSKPGKLMQ--GEATKRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE-------------- 250
           T I F PD +IF     F+   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTIRFWPDAEIFETTT-FNFETVARRLQEMAFLNKGLTITLTDERVSGSEVTDEVVSDTA 117

Query: 251 ----------IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                      A +    +   +++PGGL+ +++     +  I + +     +  G    
Sbjct: 118 EAPKHLDENAPAAEEPKVKVRTYHYPGGLEDFVKHINRTKQPIHNSVVGFTGKGTGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SI 357
            +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++
Sbjct: 175 ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+SV I +P+F GQTKTKL + + +  V+    +   H+   NP +A  
Sbjct: 235 TGDDIREGLAAIVSVKISDPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKT 294

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           +++  +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGG
Sbjct: 295 IVQKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY 
Sbjct: 355 SAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDISKLRYH 414

Query: 537 K 537
           K
Sbjct: 415 K 415


>gi|32480583|gb|AAP83857.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 392

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 147/403 (36%), Positives = 228/403 (56%), Gaps = 16/403 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKFD+++Y++SGGLHGVG+SVVNALS+ L + + R    + Q++  G P  PL++  
Sbjct: 1   HAGGKFDDNSYKVSGGLHGVGVSVVNALSERLWLDIWRDGYHYQQEYVLGEPQYPLKQL- 59

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +V  KRGT + F+P  +IF D   F    L K  +  ++L+  +K     ++        
Sbjct: 60  EVSAKRGTTLRFKPAKEIFSD-VEFHYENLAKRLRELSFLNSGLKVSLIDERG------E 112

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
             +++F++ GG++++++   + ++ +   + +   E  G     V+ A+ W +     + 
Sbjct: 113 GRRDDFHYEGGIRSFVEHLAQLKTPLHPNVISVTGEHNGI---VVDAALQWTDAYQETMY 169

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFI 374
            + N I   +GGTH +G R ALTR +  Y E     R   I    DD+    + +LSV +
Sbjct: 170 CFTNNIPQKDGGTHLAGFRAALTRTLGNYIEQNGVARQAKITFSGDDMREGMIAVLSVKV 229

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP F+ QTK KLVS D +  VE       + +L +NP EA  +   +++ +  R   RK
Sbjct: 230 PEPSFSSQTKEKLVSSDVKPAVEATFGLRLEEFLQENPNEARAIAGKIVDAARAREAARK 289

Query: 435 QREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            R++ R+   +    LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR NQAVLPLR
Sbjct: 290 ARDLTRRKGVLDIAGLPGKLADCQEKDPAMSELFIVEGDSAGGSAKQGRNRKNQAVLPLR 349

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRY 535
           GKILNV  A  +++ ++ ++  L+ ALG    + +Y  + LRY
Sbjct: 350 GKILNVERARFDRMLSSAEVGTLITALGTGIGKDEYNPDKLRY 392


>gi|32480603|gb|AAP83867.1| DNA gyrase subunit B [Xylella fastidiosa]
 gi|32480607|gb|AAP83869.1| DNA gyrase subunit B [Xylella fastidiosa]
 gi|32480609|gb|AAP83870.1| DNA gyrase subunit B [Xylella fastidiosa]
 gi|32480611|gb|AAP83871.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 392

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 148/403 (36%), Positives = 228/403 (56%), Gaps = 16/403 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKFD+++Y++SGGLHGVG+SVVNALS+ L + + R    + Q++  G P  PL++  
Sbjct: 1   HAGGKFDDNSYKVSGGLHGVGVSVVNALSERLWLDIWRDGYHYQQEYVLGEPQYPLKQLG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
            V  KRGT + F+P  +IF D   F    L K  +  ++L+  ++     ++        
Sbjct: 61  -VSAKRGTTLRFKPAKEIFSD-VEFHYENLAKRLRELSFLNSGLQVSLIDERG------E 112

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
             +++F++ GG++++++   + ++ + S + +   E  G     V+ A+ W +     I 
Sbjct: 113 GRRDDFHYEGGIRSFVEHLAQLKTPLHSNVISVTGEHNGI---VVDVALQWTDAYQETIY 169

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFI 374
            + N I   +GGTH +G R ALTR +  Y E     R   I    DD+    + +LSV +
Sbjct: 170 CFTNNIPQKDGGTHLAGFRAALTRTLGNYIEQNGIARQAKITFSGDDMREGMIAVLSVKV 229

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP F+ QTK KLVS D +  VE       + +L +NP EA  +   +++ +  R   RK
Sbjct: 230 PEPSFSSQTKEKLVSSDVKPAVEATFGLRLEEFLQENPNEARAIAGKIVDAARAREAARK 289

Query: 435 QREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            R++ R+   +    LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR NQAVLPLR
Sbjct: 290 ARDLTRRKGVLDIAGLPGKLADCQEKDPAMSELFIVEGDSAGGSAKQGRNRKNQAVLPLR 349

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRY 535
           GKILNV  A  +++ ++ ++  L+ ALG    + +Y  + LRY
Sbjct: 350 GKILNVERARFDRMLSSAEVGTLITALGTGIGKDEYNPDKLRY 392


>gi|323133438|gb|ADX30737.1| DNA gyrase beta subunit [Photobacterium phosphoreum]
          Length = 381

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 136/387 (35%), Positives = 218/387 (56%), Gaps = 13/387 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS+++ +T+ R   I+ Q +  G+P +PL +     +K GTR+ F
Sbjct: 1   VSGGLHGVGVSVVNALSEKVELTINRNGHIYQQTYCHGVPQAPLAEVGD-SDKTGTRLRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F +   F    L K  +  ++L+  +      ++E        +++ F + GG+
Sbjct: 60  WPSEETFTNNLEFHYEILAKRLRELSFLNSGISIRLIDERE------EGKQDHFTYEGGI 113

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           + +++    N++ I  ++F   +E++     TVE A+ W +     +  + N I   +GG
Sbjct: 114 RAFVEHLNRNKTPIHQKVFHFDSERED--GITVEVAMQWNDGFQEGVYCFTNNIPQRDGG 171

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  + +      K   +   DD     V ++SV + +P+F+ QTK K
Sbjct: 172 THLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLVAVVSVKVPDPKFSSQTKDK 231

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIR 445
           LVS + +  VE+A+ + F  +L+++P +A  +   +I+ S  R   RK R    RK A+ 
Sbjct: 232 LVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRAREAARKAREMTRRKGALD 291

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +
Sbjct: 292 LAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 351

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREED 532
           K+ ++Q++  L+ A+GC         D
Sbjct: 352 KMLSSQEVATLITAMGCGIGRDEYNPD 378


>gi|83415014|dbj|BAE53771.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 400

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 150/406 (36%), Positives = 218/406 (53%), Gaps = 16/406 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+S VNALS  L   V R   I++Q+FS G   + L    +  + RG
Sbjct: 1   KNSYKVSGGLHGVGVSCVNALSAYLRAEVRRDGKIYAQEFSCGKVTNELTIIGETND-RG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T ITF+PD  IF     +    L    +  ++L+  V+   +  +         + E FY
Sbjct: 60  TTITFKPDSSIFIVT-EYKYDILASRLRELSFLNAGVRLELTDKRVSFVNG-TFKHEIFY 117

Query: 265 FPGGLKTYLQTKLENR-SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
              GL  +++     +  LI ++I    TEK+G     VE A+ +       I+SY N I
Sbjct: 118 SSEGLSEFVRFIDSAKQPLIGNDIIHIITEKQGIP---VEIAMTYNTSYNESISSYVNNI 174

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T E GTH +G R ALTR +KKYA  ++   K  I I  DD       ++S+ ++EP+F 
Sbjct: 175 NTIEHGTHVAGFRRALTRTLKKYAVDSKLLEKIKIEISPDDFREGLTAVISIKVQEPQFE 234

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +A   V+ A+      YL ++P EA  +++ V+  +  R   R  RE+ +
Sbjct: 235 GQTKTKLGNNEAIGAVDQAVGTALSVYLEEHPKEAKTIVDKVVLAAMARHAARNAREMVQ 294

Query: 441 KTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           + + +    LPGKLADCS       E+F+VEGDSAGG+AKQ R R  QA+LPLRGKILNV
Sbjct: 295 RKSPLAGGGLPGKLADCSDRNPEKCEIFLVEGDSAGGTAKQGRERKYQAILPLRGKILNV 354

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQY-----REEDLRYEKVII 540
             A   K+  N +I ++  ALG    +         + LRY KV+I
Sbjct: 355 EKAMPYKVLENSEIRNIFTALGVTIGTTEDSKGLNIDKLRYHKVVI 400


>gi|145975397|gb|ABQ00176.1| GyrB [Listonella anguillarum]
 gi|145975399|gb|ABQ00177.1| GyrB [Listonella anguillarum]
 gi|145975401|gb|ABQ00178.1| GyrB [Listonella anguillarum]
 gi|145975403|gb|ABQ00179.1| GyrB [Listonella anguillarum]
          Length = 384

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 142/394 (36%), Positives = 218/394 (55%), Gaps = 15/394 (3%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G+P +PL    +  +K GT + 
Sbjct: 1   KVSGGLHGVGVSVVNALSEKVLLTIYRNGAIHTQTYCHGVPQAPLAVVGET-DKTGTTLR 59

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F P  + F +   F    L K  +  ++L+  V      ++E  +K      + F + GG
Sbjct: 60  FWPSAETFTNI-EFHYDILAKRLRELSFLNSGVSIKLFDEREEDKK------DHFRYEGG 112

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           +K ++     N++ I  ++F   +E+      TVE A+ W +     I  + N I   +G
Sbjct: 113 IKAFVGHLNRNKTPIHEKVFHFSSERDD--GITVEVAMQWNDGFQENIYCFTNNIPQRDG 170

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           G H +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QTK 
Sbjct: 171 GAHLAGFRGALTRTLNTFMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKD 230

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAI 444
           KLVS + +  VE+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK A+
Sbjct: 231 KLVSSEVKSAVESAMGEKLAEFLAENPSEAKMVCSKIIDAARAREAARKAREMTRRKGAL 290

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  
Sbjct: 291 DLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARF 350

Query: 505 EKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537
           +K+ ++Q++  L+ ALGC   R +Y  + LRY  
Sbjct: 351 DKMLSSQEVATLITALGCGIGRDEYNPDKLRYHN 384


>gi|115500936|dbj|BAF34138.1| B subunit gyrase [Pseudomonas sp. CYN01B]
          Length = 388

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 143/400 (35%), Positives = 216/400 (54%), Gaps = 18/400 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           ++TY +SGGLHGVG+SVVNALS+EL +T+ R   ++ Q +  G+P +PL    +  +  G
Sbjct: 1   DNTYRVSGGLHGVGVSVVNALSEELRLTIRRAGQVWEQVYVHGVPQAPLAVIGET-DTTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T++ F+P  + F +   F    L K  +  ++L+  V      ++   E       E F 
Sbjct: 60  TQVHFKPSAETFSNI-QFSWDILAKRIRELSFLNSGVGIVLRDERSGKE-------ELFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           + GGL+ ++     N++ ++       + E  G     VE A+ W +     I  + N I
Sbjct: 112 YEGGLRAFVDYLNTNKTAVNEVFHFQVQREDDGV---GVEVALQWNDSFNENILCFTNNI 168

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFA 380
              +GGTH  GLR ALTR +  Y E     +        DD       I+ V + +P+F+
Sbjct: 169 PQRDGGTHLGGLRSALTRNLNNYIEAEGLAKKFKVATTGDDAREGLTAIIRVKVPDPKFS 228

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    
Sbjct: 229 SQTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTR 288

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR  QA+LPL+GKILNV
Sbjct: 289 RKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILNV 348

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
             A  +K+ ++Q++  L+ ALGC   R ++  + LRY  +
Sbjct: 349 EKARFDKMLSSQEVGTLITALGCGIGREEFNIDKLRYHNI 388


>gi|126035348|gb|ABN72427.1| gyrase B subunit [Vibrio cholerae]
          Length = 380

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 141/390 (36%), Positives = 216/390 (55%), Gaps = 15/390 (3%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+++ +T+ R   I SQ +  G+P +PL    +   + GT + F P
Sbjct: 1   GGLHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGET-ERTGTTVRFWP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V    + ++E  +K      + F + GG++ 
Sbjct: 60  SAQTFTNI-EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEGGIQA 112

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++     N++ I  ++F    E++     +VE A+ W +     I  + N I   +GGTH
Sbjct: 113 FVTHLNRNKTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTH 170

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  Y +      K   +   DD       ++SV + +P+F+ QTK KLV
Sbjct: 171 LAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 230

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447
           S + +  VE+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK A+   
Sbjct: 231 SSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLA 290

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+
Sbjct: 291 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 350

Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYE 536
            ++Q++  L+ ALGC   R +Y  + LRY 
Sbjct: 351 LSSQEVATLITALGCGIGRDEYNPDKLRYH 380


>gi|83854009|gb|ABC47942.1| gyrase B subunit [Vibrio parahaemolyticus]
          Length = 385

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 146/395 (36%), Positives = 221/395 (55%), Gaps = 15/395 (3%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K GT+I F P 
Sbjct: 1   GLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKTGTQIRFWPS 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            + F +   F    L K  +  ++L+  V      ++E        +++ F + GG++ +
Sbjct: 60  AETFSNT-EFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KQDHFMYEGGIQAF 112

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           +Q    N++ I  +IF    E++     +VE A+ W +     I  + N I   +GGTH 
Sbjct: 113 VQHLNTNKTPIIEKIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHL 170

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS
Sbjct: 171 AGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVS 230

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLR 448
            + +  VE+A+ +    +LV+NP EA  +   +I+ +  R   RK R    RK A+    
Sbjct: 231 SEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAG 290

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ 
Sbjct: 291 LPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 350

Query: 509 NNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
           ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 351 SSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 385


>gi|261343280|gb|ACX70141.1| DNA gyrase subunit B [Nocardia ninae]
          Length = 408

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 130/414 (31%), Positives = 208/414 (50%), Gaps = 27/414 (6%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + TY +SGGLHGVG+SVVNALS  + + + R    ++Q +    P      +     + G
Sbjct: 1   SETYAVSGGLHGVGLSVVNALSIRIELAIDRDGYHWTQNYQHAKPEEL--VRGAPTKRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
              +F PDP+IF     F+   + +  Q  A+L+  +    + ++               
Sbjct: 59  NTTSFWPDPEIFETTT-FNFQTVARRMQEMAFLNQGLTIVLTDERASAADEVDSEIAEAP 117

Query: 250 EIAEKYGIP--EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307
           + AE+      +   +++PGGL  +++     +  I + +     +  G     +E A+ 
Sbjct: 118 KGAEEAPAEQLKTRTYHYPGGLADFVRHLNRTKQPIHNSVVGFLGKGSGH---ELEVAMQ 174

Query: 308 WCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMI 364
           W       + S+ NTI T EGGTHE G R ALT  + KYA   +   ++  ++  DD+  
Sbjct: 175 WNAGYSESVHSFANTINTHEGGTHEEGFRAALTTVVNKYARDKRLLKEKDGNLTGDDIRE 234

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
               I+S+ + EP+F GQTKTKL + + +  V+    +   ++   NP +A  ++   I 
Sbjct: 235 GLAAIVSLKVAEPQFEGQTKTKLGNTEVKSFVQRTCNEHLTYWFEANPADAKTIVSKAIS 294

Query: 425 RSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483
            ++ R   RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+
Sbjct: 295 SAQARTAARKARELVRRKSANDLGGLPGKLADCRSKDPSRSEIYIVEGDSAGGSAKSGRD 354

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
              QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K
Sbjct: 355 SMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYHK 408


>gi|62085700|gb|AAX63242.1| DNA gyrase subunit B [Gordonia terrae]
          Length = 425

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 137/430 (31%), Positives = 212/430 (49%), Gaps = 38/430 (8%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKFD+  Y +SGGLHGVGISVVNALS ++ + +      + Q +S   P +   ++ 
Sbjct: 1   HAGGKFDSDAYAVSGGLHGVGISVVNALSTKVELEIQNDGYNWEQTYSYAKPGAL--EQG 58

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
               K GT + F PDP+IF +   F+A  + +  Q  A+L+  +    +  +  A +   
Sbjct: 59  SATRKTGTTVRFWPDPEIFSETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEPPG 118

Query: 258 PEKEE-----------------------------FYFPGGLKTYLQTKLENRSLISSEIF 288
               +                             +++P GL  Y++     +  I + + 
Sbjct: 119 DADGDEDGGSTEAAEVVKSEEEKAAAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVI 178

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
               +  G     VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA 
Sbjct: 179 GFNAKGDGH---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYAL 235

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
             +   ++   +  DD+      ++SV + +P+F GQTKTKL + + +  V+    +   
Sbjct: 236 DKKLLKEKDGKLTGDDIREGLAAVISVKVSDPQFEGQTKTKLGNTEVKGFVQRTCNEHLG 295

Query: 406 HYLVQNPIEATKLLEWVIERSE-ERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGT 464
           H+   NP EA  +++  ++ S+     RR +  V RKTA     LPGKLADC  N     
Sbjct: 296 HWFEANPAEAKIIVKKAVDSSQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKC 355

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           E++IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G   
Sbjct: 356 EVYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI 415

Query: 525 RSQYREEDLR 534
             ++    LR
Sbjct: 416 HDEFDISKLR 425


>gi|4514429|dbj|BAA75413.1| DNA gyrase subunit B [Acinetobacter sp.]
 gi|4514431|dbj|BAA75414.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 389

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 142/401 (35%), Positives = 220/401 (54%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +LH+T+ R   I  Q+++ G P  PL+   +  +  G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSKKLHLTIHRAGQIHEQEYAHGDPQYPLKVVGET-DTSG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  ++   +  F    L +  +  ++L+  V+     ++   E         + 
Sbjct: 60  TTVRFWPS-ELTFSQTIFSVDILARRLRELSFLNAGVRIVLRDERVNLE-------HIYD 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   E ++ ++           G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLSEFVKYINEGKTHLNDIFHFTTDADNGI---GVEVALQWNDSYQENVRCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  +++  DD       I+SV + +P+F+ 
Sbjct: 169 QKDGGTHLAGFRAALTRGLNSYMENESLLKKEKVAVTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNR 440
           QTK KLVS + +  VE A+   F  YL++NP  A  +   +I+ +  R   RK      R
Sbjct: 229 QTKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV 
Sbjct: 289 KSALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY K+II
Sbjct: 349 RARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIII 389


>gi|19912115|dbj|BAB88369.1| DNA gyrase subunit B [Cytophaga sp. T-561]
          Length = 390

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 139/395 (35%), Positives = 217/395 (54%), Gaps = 10/395 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+S VNALS  + VTV R   I  Q++ RG+P   + +  +  ++RGT + F
Sbjct: 1   VSGGLHGVGVSCVNALSSSMKVTVHRGGKIHEQEYVRGVPQYEVREIGET-DRRGTHVHF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +PD +IF     +    +    +  A+L+  +K      +E  E+      ++FY  GGL
Sbjct: 60  KPDHEIFQ-ILEYKYETIANRLREMAFLNAGIKISLKDLREKDEEG-NYRADDFYSEGGL 117

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
             +++   EN+  I  +    ++EK G     V+ A+ +       + SY NTI T EGG
Sbjct: 118 IEFVEYLDENKQKIIEKPIYIESEKNGVP---VQVAMGYNNSYTENVVSYVNTINTYEGG 174

Query: 329 THESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH SG R ALTR +K YA+ +    K  I I  DD       ++SV + EP+F GQTKTK
Sbjct: 175 THVSGFRRALTRTLKSYADKSGMLDKGKIDISGDDFREGLTAVISVKVAEPQFEGQTKTK 234

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L + D    V+ ++ +    +L+++P EA  ++  V+  ++ R   +K RE+ ++  +  
Sbjct: 235 LGNSDVTGAVDASVSETLQFWLLEHPKEAKIIIGKVVLAAQARHAAKKAREMVQRKNVLG 294

Query: 447 LRLPGKL-ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
                   ADC+ +     EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A   
Sbjct: 295 GGGLPGKLADCANSDPAVCELYLVEGDSAGGSAKQGRDRDFQAILPLKGKILNVEKAQEH 354

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           KI +N +I +++ ALG +  +   E++L   K+  
Sbjct: 355 KIXDNDEIKNILTALGVKFGTANDEKELDLSKLRY 389


>gi|51987928|dbj|BAD44724.1| DNA gyrase subunit B [Pseudomonas anguilliseptica]
          Length = 390

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 145/402 (36%), Positives = 217/402 (53%), Gaps = 17/402 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS EL +T+ R   I+ Q +  G+P +P+       +  G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSKELVLTIRRSGKIWEQTYVHGVPTAPIATVGD-SDTTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+I F+P  + F +   F    L K  +  ++L+  V      ++   E       E F 
Sbjct: 60  TQIHFKPSEETFANIH-FSWDILAKRLRELSFLNSGVGILLKDERSGKE-------ELFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL+ +++    N++ ++           G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLRAFVEYLNHNKTAVNQVFHFTVQRDDGV---GVEVALQWNDSFNENLLCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR    Y E     +        DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLAGFRSALTRKPDAYIEQEGLPKKHKIATTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    R
Sbjct: 229 QTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR  QA+LPL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIM 541
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIM
Sbjct: 349 KARFDKMISSQEVGTLITALGCGIGRDEYNIDKLRYHNIIIM 390


>gi|323147004|gb|ADX32795.1| DNA gyrase B subunit [endophytic bacterium 26(2011)]
          Length = 240

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 87/252 (34%), Positives = 133/252 (52%), Gaps = 27/252 (10%)

Query: 76  HLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEI 132
           HL  EV+DN++DE +AGY N I+V +  +  +++ DNGRG+P          P +S  EI
Sbjct: 1   HLVFEVLDNSIDEALAGYCNDIQVIIHADNSISITDNGRGVPTGLKMDDKHEPKRSAAEI 60

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP--- 189
           ++T LHAGGKFD ++Y++SGGLHGVG+S VNALS  L +TV R       +F RG+P   
Sbjct: 61  VMTELHAGGKFDQNSYKVSGGLHGVGVSCVNALSAWLRLTVRRDGKKHFMEFHRGVPQNR 120

Query: 190 ---------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
                    +SP++   +  N RGT + F  D  IFG+   +    L K  +  ++L+  
Sbjct: 121 VIEEIGGIAVSPIQVVGETEN-RGTEVHFMADETIFGN-VEYHYDILAKRIRELSFLNNG 178

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
           V+   +  +   E         F F GG+K +++   + +S++   IF    EK G    
Sbjct: 179 VRIRLTDQRSGKEDD-------FAFVGGVKGFVEYINKTKSVLHPTIFHVSGEKDGV--- 228

Query: 301 TVEWAIAWCEEN 312
            VE A+ W +  
Sbjct: 229 GVEVAMQWNDSF 240


>gi|119226140|dbj|BAF41049.1| DNA gyrase subunit B [Rhodococcus marinonascens]
          Length = 421

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 132/427 (30%), Positives = 210/427 (49%), Gaps = 37/427 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y ISGGLHGVGISVVNALS  L V + R    ++Q ++   P   ++       + G
Sbjct: 1   SDSYAISGGLHGVGISVVNALSSRLEVDIKRDGYRWTQTYTYSKPGELVK--GDATRETG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------ 258
           + + F  DP IF     +    + +  Q  A+L+  +    + ++  A +          
Sbjct: 59  STVRFWSDPDIFETTV-YSFETVARRLQEMAFLNKGLTITLTDERVSAAEVTEDVVSQVA 117

Query: 259 ---------------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                                +   +++PGGL+ Y++     +  I + +     +  G 
Sbjct: 118 DAPKTAEDESAQAAAPTVHKVKTRVYHYPGGLEDYVRHINRTKQPIHNSVVGFTAKGTGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRA 354
               +E A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +     + 
Sbjct: 178 ---ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRSALTATVNKYALDKKLLKDKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             +  DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +
Sbjct: 235 PKLTGDDIREGLAAIISVKVGEPQFEGQTKTKLGNTEVRSFVQKASNEHLSHWFEANPAD 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   +  ++ R+  RK RE V RK+A     LPGKLADC  N    +E++IVEGDS
Sbjct: 295 AKTIVNKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPSKSEIYIVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    L
Sbjct: 355 AGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDIAKL 414

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 415 RYHKIVL 421


>gi|10121863|gb|AAG13404.1|AF285158_1 topoisomerase II alpha-3 [Homo sapiens]
          Length = 536

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 97/540 (17%), Positives = 183/540 (33%), Gaps = 60/540 (11%)

Query: 17  QGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD------ 70
           Q  +E ++ +    +  A    S    Y          LE + +RP  YIG  +      
Sbjct: 7   QPVNENMQVNKIKKNEDAKKRLSVERIYQKK-----TQLEHILLRPDTYIGSVELVTQQM 61

Query: 71  ----------------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDN 112
                              L+ +F E++ NA D        + I V++D  N  +++ +N
Sbjct: 62  WVYDEDVGINYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNN 121

Query: 113 GRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVT 172
           G+GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V 
Sbjct: 122 GKGIPVVEH-KVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 180

Query: 173 V--ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLL 228
                   +F Q +   +  +   + +    +  T ITF+PD   F  +       A ++
Sbjct: 181 TASREYKKMFKQTWMDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMV 240

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY---FPGGLKTYLQTKLENRSLISS 285
           +     A  +  VK   + +K   + +               G    +  +  N      
Sbjct: 241 RRAYDIAGSTKDVKVFLNGNKLPVKGFRSYVDMYLKDKLDETGNSLKVIHEQVNHRWEVC 300

Query: 286 EIFTGKTEKKGTHRGTVEWAIA---WCEENPEITSYCNTI-------------LTDEGGT 329
              + K  ++ +   ++  + +   W     +     N                  +GG 
Sbjct: 301 LTMSEKGFQQISFVNSIATSKSSKYWSSRKSKQHILLNFFVLFKFINDAFFGICPFKGGR 360

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           H   +   +   +       +NK  +++ +  +       ++  I  P F  QTK  +  
Sbjct: 361 HVDYVADQIVTKLVD-VVKKKNKGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTL 419

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
                     L + F    +        +L WV  +++  ++  K+    +   I+ +  
Sbjct: 420 QPKSFGSTCQLSEKFIKAAIG-CGIVESILNWVKFKAQ--VQLNKKCSAVKHNRIKGIPK 476

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEK 506
                D     +    L + EGDSA   A        R    V PLRGKILNV  A  ++
Sbjct: 477 LDDANDAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQ 536


>gi|157073819|dbj|BAF79908.1| gyrase B [Methylobacterium brachiatum]
 gi|157073821|dbj|BAF79909.1| gyrase B [Methylobacterium brachiatum]
 gi|157073827|dbj|BAF79912.1| gyrase B [Methylobacterium brachiatum]
          Length = 399

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 145/408 (35%), Positives = 218/408 (53%), Gaps = 21/408 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS  L + + R     + +F  G  +SPL+       +RG
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSSWLKLRIWRNEMEHAMEFRHGDAVSPLKVVGPGNGRRG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF P    F     FD   L K  +  A+L+  V+   +  +    K      EE Y
Sbjct: 61  TEVTFLPSTDTF-TMIEFDYGTLEKRLRELAFLNSGVRIVLTDARHAEHKR-----EELY 114

Query: 265 FPGGLKTYLQTKLENRSLIS--SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           + GG++ +++    +R  I   S     + E++G     VE A  W +     +  + N 
Sbjct: 115 YEGGIEAFVRYLDRSRKPIEGMSSPVVVRAEREGI---RVEVAFWWNDSFNETVLPFTNN 171

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R ALTR I  YA+ +    +  +S+  +D       ++SV + +P+F
Sbjct: 172 IPQRDGGTHMAGFRAALTRQITGYADSSGVSKREKVSLTGEDCREGLTAVISVQVPDPKF 231

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV- 438
           + QTK KLVS + +  VEN L +    +L +NP +A  ++  V+  +  R   RK RE  
Sbjct: 232 SSQTKDKLVSSEVRPAVENVLNEGLSTWLEENPQQARSVMGKVVLAASAREAARKARETV 291

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +      E+ +VEGDSAGGSAKQ R+R+ QAVLPLRGKILN
Sbjct: 292 TRKGALDIASLPGKLADCQERDPSKCEILLVEGDSAGGSAKQGRDRAFQAVLPLRGKILN 351

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVII 540
           V    ++++ ++ +I  L+ ALG         R  +  E LRY ++II
Sbjct: 352 VERVRADRMLSSVEIGTLITALGAGIGRSSTDREGFNPEKLRYHRIII 399


>gi|51571591|emb|CAH18962.1| gyrase B [Corallococcus coralloides]
          Length = 384

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 134/389 (34%), Positives = 209/389 (53%), Gaps = 16/389 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
            E+SGGLHGVG++ VN L++   V + R   +F Q ++RG+P  P  +     +KRGT I
Sbjct: 4   QEVSGGLHGVGVTCVNFLAEWFKVRIQRNGKVFEQGYARGVPNGPPVEVG-TTDKRGTMI 62

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PDP I      F+   L +  +  A+L+  +      ++   E         F F G
Sbjct: 63  HFKPDPTIMETA-DFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD-------FKFDG 114

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+ ++++   + ++ +  +    K+E++G    ++E A+ W +     I ++ N I T E
Sbjct: 115 GIASFVEYLNKAKTALHDKPVYIKSEREGV---SLEIAMQWNDGYDERIFTFANNINTHE 171

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTK 384
           GG+H SG + ALTR +  YAE     + +      +D       ++SV +  P+F GQTK
Sbjct: 172 GGSHLSGFKSALTRTLNSYAEKGGQWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQTK 231

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTA 443
           TKL + + +  VE  + D    +L +NP  A K++  + +     +  RK RE   RK  
Sbjct: 232 TKLGNSEVKGLVEQMVNDQLASFLEENPPLAKKVVAKIGDACRAGIAARKARETVRRKGV 291

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC     + +EL+IVEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A 
Sbjct: 292 LDGGGLPGKLADCQSRDPNESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKAR 351

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREED 532
            EK+  + +I+ L+ ALG     +  + +
Sbjct: 352 FEKMLTSAEIVTLITALGTGIVGEDYDPE 380


>gi|259018192|gb|ACV89688.1| DNA gyrase subunit B [Nocardia anaemiae]
          Length = 414

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 129/420 (30%), Positives = 207/420 (49%), Gaps = 33/420 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L   +      +SQ +    P      + +   + G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSHRLEAEIDHDGYHWSQTYKDAKPGKL--VQGEPTKRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK---------- 254
           T I F  DP+IF     ++   + +  Q  A+L+  +    + ++    +          
Sbjct: 59  TTIRFWADPEIFETTT-YNFETVARRLQEMAFLNKGLTIVLTDERVSDAEVTDEVVSETA 117

Query: 255 -------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
                            +   +++PGGL+ +++     +  I + + +   +  G     
Sbjct: 118 EAPKHADEEAPAPAHKVKTRTYHYPGGLEDFVKHINRTKQPIHNSVVSFTGKGTGH---E 174

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SII 358
           +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++ 
Sbjct: 175 LEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKDKDGNLT 234

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+      I+SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  +
Sbjct: 235 GDDIREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRTCNEHLSHWFEANPADAKTI 294

Query: 419 LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           +   +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGS
Sbjct: 295 VNKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGS 354

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K
Sbjct: 355 AKSGRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYHK 414


>gi|11078705|dbj|BAB17357.1| DNA gyrase subunit B [Pseudomonas aeruginosa]
          Length = 389

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 147/401 (36%), Positives = 221/401 (55%), Gaps = 18/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           ++TY++SG LHGVG+SVVNALS EL +T+ R N ++ Q +  G+P  PL +  +  +  G
Sbjct: 1   DNTYKVSGRLHGVGVSVVNALSHELRLTIRRHNKVWEQVYHHGVPQFPLREVGET-DGSG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F+P P+ F +   F    L K  +  ++L+  V      ++         ++E F 
Sbjct: 60  TEVHFKPSPETFSNIH-FSWDILAKRIRELSFLNSGVGILLRDER-------TGKEELFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           + GGLK +++    N+S ++       + E+ G     VE A+ W +     I  + N I
Sbjct: 112 YEGGLKAFVEYLNTNKSAVNQVFHFNVQREEDGV---GVEVALQWNDSFNENILCFTNNI 168

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  Y E     +        DD       I+SV + +P+F+
Sbjct: 169 PQRDGGTHLAGFRSALTRNLNNYIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFS 228

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    
Sbjct: 229 SQTKDKLVSSEVKTAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTR 288

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR  QA+LPL+GKILNV
Sbjct: 289 RKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILNV 348

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 349 EKARFDKMLSSQEVGTLITALGCGIGREEYNMDKLRYHNII 389


>gi|259018166|gb|ACV89675.1| DNA gyrase subunit B [Nocardia vinacea]
          Length = 414

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 129/420 (30%), Positives = 206/420 (49%), Gaps = 33/420 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L   +      +SQ +    P      + +   + G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSHRLEAEIDHDGYHWSQTYKDAKPGKL--VQGEPTKRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK---------- 254
           T I F  DP+IF     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTIRFWADPEIFETTT-YNFETVARRLQEMAFLNKGLTIVLTDERVSDTDVTDEVVSETA 117

Query: 255 -------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
                            +   +++PGGL+ +++     +  I + + +   +  G     
Sbjct: 118 EAPKHADEEAPAPAHKVKTRTYHYPGGLEDFVKHINRTKQPIHNSVVSFTGKGTGH---E 174

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SII 358
           +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++ 
Sbjct: 175 LEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKDKDGNLT 234

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+      I+SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  +
Sbjct: 235 GDDIREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRTCNEHLSHWFEANPADAKTI 294

Query: 419 LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           +   +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGS
Sbjct: 295 VNKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGS 354

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K
Sbjct: 355 AKSGRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYHK 414


>gi|323147006|gb|ADX32796.1| DNA gyrase B subunit [endophytic bacterium 27(2011)]
          Length = 241

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 87/252 (34%), Positives = 133/252 (52%), Gaps = 27/252 (10%)

Query: 76  HLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEI 132
           HL  EV+DN++DE +AGY N I+V +  +  +++ DNGRG+P          P +S  EI
Sbjct: 1   HLVFEVLDNSIDEALAGYCNDIQVIIHADNSISITDNGRGVPTGLKMDDKHEPKRSAAEI 60

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP--- 189
           ++T LHAGGKFD ++Y++SGGLHGVG+S VNALS  L +TV R       +F RG+P   
Sbjct: 61  VMTELHAGGKFDQNSYKVSGGLHGVGVSCVNALSAWLRLTVRRDGKKHFMEFHRGVPQNR 120

Query: 190 ---------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
                    +SP++   +  N RGT + F  D  IFG+   +    L K  +  ++L+  
Sbjct: 121 VIEEIGGIAVSPIQVVGETEN-RGTEVHFMADETIFGN-VEYHYDILAKRIRELSFLNNG 178

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
           V+   +  +   E         F F GG+K +++   + +S++   IF    EK G    
Sbjct: 179 VRIRLTDQRSGKEDD-------FAFVGGVKGFVEYINKTKSVLHPTIFHVSGEKDGV--- 228

Query: 301 TVEWAIAWCEEN 312
            VE A+ W +  
Sbjct: 229 GVEVAMQWNDSF 240


>gi|208609657|dbj|BAG72204.1| gyrase B [Methylobacterium sp. Hojyo1]
          Length = 392

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 148/401 (36%), Positives = 220/401 (54%), Gaps = 14/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS  L + + R     + +F  G  +SPL       ++RG
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSTWLRLRIWRAGQEHAMEFRHGDAVSPLAVVGPAGDRRG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF P    F     FD A L K  +  A+L+  V+   +  +    K      EE  
Sbjct: 61  TEVTFLPSTDTFT-MVEFDYATLEKRLRELAFLNSGVRIVLTDARHAEHKR-----EELV 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG++ +++     +S + S+    + ++ G     VE A+ W +     +  + N I 
Sbjct: 115 YEGGVEAFVRYLDRTKSPLVSQPVVVRADRDGI---GVEVALWWNDSYHETVLPFTNNIP 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR I  YAE +   +   +    DD       I+SV + +P+F+ 
Sbjct: 172 QRDGGTHMAGFRAALTRQITGYAESSGIAKREKVSLTGDDCREGLTAIISVKVPDPKFSS 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTK KLVS + +  VEN L +   ++L ++P EA  ++  V E +  R   RK RE   R
Sbjct: 232 QTKDKLVSSEVRPVVENVLNEGLSNWLEEHPAEAKTIVGKVAEAAAAREAARKARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +      E+ +VEGDSAGGSAKQ R+R+ QAVLPLRGKILNV 
Sbjct: 292 KGALDIASLPGKLADCQERDPSKCEILLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q+I  L+ ALG    R ++  + LRY ++II
Sbjct: 352 RARFDKMLSSQEIGTLITALGTGIGREEFNPDKLRYHRIII 392


>gi|313574629|emb|CBX26167.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
          Length = 392

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 143/401 (35%), Positives = 215/401 (53%), Gaps = 14/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS  L + + R   +    F+ G+  +PL    +   + G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGRSG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF   P+ F     +D   L    +  A+L+  V+   +  +    K     +EE  
Sbjct: 61  TEVTFLASPETFT-MTDYDYGTLEHRLRELAFLNSGVRILLTDKRHSDIK-----QEELL 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GGL+ +++     +  +  +    K EK G    TVE A+ W +   E    + N I 
Sbjct: 115 YDGGLEAFVRYLDRAKKPLVDKPVAIKGEKDGI---TVEVALWWNDSYHENVLCFTNNIP 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  YAE +    K  +S+  +D       ILSV + +P+F+ 
Sbjct: 172 QRDGGTHMAGFRAALTRQVTSYAETSGILKKEKVSLQGEDCREGLTAILSVKVPDPKFSS 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNR 440
           QTK KLVS + +  VE+ + +    +L ++P +A  L+ + V         R+ +    R
Sbjct: 232 QTKDKLVSSEVRPVVESLVNEALSTWLEEHPSDARILVGKVVEAAVAREAARKARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADCS+     +ELF+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 292 KGALDIASLPGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVII 540
            A  +K+ ++Q+I  L+ ALG          + LRY K+II
Sbjct: 352 RARFDKMLSSQEIGTLITALGTSIGKDEFNADKLRYHKIII 392


>gi|11270916|pir||T43907 DNA gyrase chain B [imported] - Acinetobacter sp. (fragment)
 gi|4514427|dbj|BAA75412.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 388

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 142/401 (35%), Positives = 216/401 (53%), Gaps = 18/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L +T+ R   I  Q++  G P  PL+   +     G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSSKLQLTIHRAGQIHEQEYQHGDPQYPLKVVGETS-TTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P    F     F+   L +  +  ++L+  VK     ++   E         + 
Sbjct: 60  TTVRFWPSGDTFSQTI-FNVDILARRLRELSFLNAGVKIVLRDERVNFE-------HIYA 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   E ++ ++           G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLSEFVKYINEGKNHLNDIFHFTADSDNGI---AVEVALQWNDSYQENVRCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  +++  DD       I+SV + +P+F+ 
Sbjct: 169 QKDGGTHLAGFRAALTRGLNSYLENENILKKEKVNVSGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNR 440
           QTK KLVS + +  VE A+   F  YL++NP  A  +   +I         R+ +    R
Sbjct: 229 QTKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADC ++ A  +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV 
Sbjct: 289 KSALDIAGLPGKLADCQKDPA-LSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVE 347

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY K+II
Sbjct: 348 RARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIII 388


>gi|259018118|gb|ACV89651.1| DNA gyrase subunit B [Nocardia sienata]
          Length = 415

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 132/421 (31%), Positives = 209/421 (49%), Gaps = 34/421 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L   V      +SQ +   +P      + +     G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSSRLEAEVDTDGYHWSQTYKDAVPGQL--VQGEPTKATG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T I F  DP +F     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTIRFWADPAVFETTT-YNFETVSRRLQEMAFLNKGLTIVLTDERVSDIEITDEVVSDTA 117

Query: 250 ---EIAEKYGIPEKEE------FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
              +  +    P  E       +++PGGL+ +++     +  I + + +   +  G    
Sbjct: 118 EAPKHDDNGEKPAAEPKVKTRTYHYPGGLEDFVRHINRTKQPIHNSVVSFNGKGTGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SI 357
            +E A+ W       + ++ NTI T EGGTHE G R ALT  + +YA+  +  +    ++
Sbjct: 175 ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNRYAKEKKLLKEKDGNL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  
Sbjct: 235 TGDDIREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRACNEHLAHWFEANPADAKT 294

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGG
Sbjct: 295 IVNKAVSSAQARVAARKARELVRRKSATDIGGLPGKLADCRSKDPSKSEIYIVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +K+  N ++  ++ A G     ++    LRY 
Sbjct: 355 SAKSGRDSMYQAILPLRGKIINVEKARIDKVLKNAEVQSIITAFGTGIHDEFDIAKLRYH 414

Query: 537 K 537
           K
Sbjct: 415 K 415


>gi|19912069|dbj|BAB88346.1| DNA gyrase subunit B [Cytophaga sp. I-545]
          Length = 391

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 144/395 (36%), Positives = 211/395 (53%), Gaps = 9/395 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+S VNALS+ L  TV R+  ++ Q++ RG  L P++   +  N  GT +TF
Sbjct: 1   VSGGLHGVGVSCVNALSNHLKATVHREGKVWEQEYERGKALYPVKSIGET-NVTGTVVTF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD  IF     ++   L    +  AYL+  +    +  +E  EK      E F+   GL
Sbjct: 60  YPDDTIFTQTTEYNYETLANRMRELAYLNKGITITIADKREKDEKG-EFVGETFHSEEGL 118

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGG 328
           K +++     R  + + + + + EK G     VE A+ +     E    Y N I T EGG
Sbjct: 119 KEFIKFLDATREPLINHVISMEGEKNGIP---VEVAMVYNTGFSENLHSYVNNINTHEGG 175

Query: 329 THESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH SG R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F GQTKTK
Sbjct: 176 THLSGFRRGLTSTLKKYADSSGLLDKVKFEISGDDFREGLTAIVSVKVAEPQFEGQTKTK 235

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IR 445
           L + +    V  A+ +    YL +NP +A +++E V   ++ R    K RE+ ++   + 
Sbjct: 236 LGNREVTSAVSQAVSEMLTDYLEENPDDAKQIVEKVKLAAQARHAAAKAREMVQRKNPMG 295

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKL+DCS       E+F+VEGDSAGG+AK  R+R+ QA+LPLRGKILNV  A   
Sbjct: 296 GGGLPGKLSDCSDQDPEKCEIFLVEGDSAGGTAKMGRDRNFQAILPLRGKILNVEKAMQH 355

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           K+  N++I ++  ALG    ++   + L  EK+  
Sbjct: 356 KVFENEEIKNIYTALGVTIGTEEDSKALNLEKLRY 390


>gi|323146990|gb|ADX32788.1| DNA gyrase B subunit [endophytic bacterium 21(2011)]
 gi|323146998|gb|ADX32792.1| DNA gyrase B subunit [endophytic bacterium 19(2011)]
          Length = 244

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 87/252 (34%), Positives = 133/252 (52%), Gaps = 27/252 (10%)

Query: 76  HLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEI 132
           HL  EV+DN++DE +AGY N I+V +  +  +++ DNGRG+P          P +S  EI
Sbjct: 1   HLVFEVLDNSIDEALAGYCNDIQVIIHADNSISITDNGRGVPTGLKMDDKHEPKRSAAEI 60

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP--- 189
           ++T LHAGGKFD ++Y++SGGLHGVG+S VNALS  L +TV R       +F RG+P   
Sbjct: 61  VMTELHAGGKFDQNSYKVSGGLHGVGVSCVNALSAWLRLTVRRDGKKHFMEFHRGVPQNR 120

Query: 190 ---------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
                    +SP++   +  N RGT + F  D  IFG+   +    L K  +  ++L+  
Sbjct: 121 VIEEIGGIAVSPIQVVGETEN-RGTEVHFMADETIFGN-VEYHYDILAKRIRELSFLNNG 178

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
           V+   +  +   E         F F GG+K +++   + +S++   IF    EK G    
Sbjct: 179 VRIRLTDQRSGKEDD-------FAFVGGVKGFVEYINKTKSVLHPTIFHVSGEKDGV--- 228

Query: 301 TVEWAIAWCEEN 312
            VE A+ W +  
Sbjct: 229 GVEVAMQWNDSF 240


>gi|313574653|emb|CBX26179.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
          Length = 392

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 143/401 (35%), Positives = 215/401 (53%), Gaps = 14/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS  L + + R   +    F+ G+  +PL    +   + G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGRSG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF   P+ F     +D   L    +  A+L+  V+   +  +    K     +EE  
Sbjct: 61  TEVTFLASPQTFT-MTDYDYGTLEHRLRELAFLNSGVRILLTDKRHSDVK-----QEELL 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GGL+ +++     +  +  +    K EK G    TVE A+ W +   E    + N I 
Sbjct: 115 YDGGLEAFVRYLDRAKKPLVDKPVAIKGEKDGI---TVEVALWWNDSYHENVLCFTNNIP 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  YAE +    K  +S+  +D       ILSV + +P+F+ 
Sbjct: 172 QRDGGTHMAGFRAALTRQVTSYAETSGILKKEKVSLQGEDCREGLTAILSVKVPDPKFSS 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNR 440
           QTK KLVS + +  VE+ + +    +L ++P +A  L+ + V         R+ +    R
Sbjct: 232 QTKDKLVSSEVRPVVESLVNEALSTWLEEHPSDARILVGKVVEAAVAREAARKARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADCS+     +ELF+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 292 KGALDIASLPGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVII 540
            A  +K+ ++Q+I  L+ ALG          + LRY K+II
Sbjct: 352 RARFDKMLSSQEIGTLITALGTSIGKDEFNADKLRYHKIII 392


>gi|62085702|gb|AAX63243.1| DNA gyrase subunit B [Gordonia soli]
          Length = 420

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 138/426 (32%), Positives = 215/426 (50%), Gaps = 37/426 (8%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+ +Y +SGGLHGVGISVVNALS ++ + +      + Q ++R IP    +   + 
Sbjct: 1   GGKFDSDSYAVSGGLHGVGISVVNALSTKVELEIDHGGYHWDQVYTRAIPGPLNQ--GEA 58

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC------------ 247
             K GT + F PD  IF     F A  + +  Q  A+L+  +    +             
Sbjct: 59  TKKTGTTVRFWPDGDIFETTN-FSAETIARRLQEMAFLNKGLTITLTDRRVAAADPVGDS 117

Query: 248 ---------------DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
                          ++E A +   P+   +++P GL  Y++     +  I + +     
Sbjct: 118 DDDREGEDAAERIKSEEEKATEAAKPKTRTYHYPDGLVDYIKHLNRTKQPIHTSVVGFTG 177

Query: 293 EKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ- 350
           + +G     VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   + 
Sbjct: 178 KGEGH---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKL 234

Query: 351 -NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
             ++   +  DD+      ++SV + +P+F GQTKTKL + + +  V+    +   H+  
Sbjct: 235 LKEKDGKLTGDDIREGLAAVISVKVSDPQFEGQTKTKLGNTEVRSFVQRMSNEHLGHWFE 294

Query: 410 QNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFI 468
            NP EA  +++  ++ ++ R+  RK RE V RKTA     LPGKLADC  N     E+++
Sbjct: 295 SNPAEAKTIIKKAVDSAQARIAARKARELVRRKTATDIGGLPGKLADCRSNDPAKCEVYL 354

Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528
           VEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++
Sbjct: 355 VEGDSAGGSAKTGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEF 414

Query: 529 REEDLR 534
               LR
Sbjct: 415 DIAKLR 420


>gi|313574559|emb|CBX26132.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574561|emb|CBX26133.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574563|emb|CBX26134.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574565|emb|CBX26135.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574567|emb|CBX26136.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574569|emb|CBX26137.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574571|emb|CBX26138.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574573|emb|CBX26139.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574575|emb|CBX26140.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574577|emb|CBX26141.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574579|emb|CBX26142.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574581|emb|CBX26143.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574583|emb|CBX26144.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574585|emb|CBX26145.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
          Length = 392

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 145/401 (36%), Positives = 215/401 (53%), Gaps = 14/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS  L + + R   +    F+ G+  +PL    +   + G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGRSG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF   P  F     +D   L    +  A+L+  V+   +  +    K     +EE  
Sbjct: 61  TEVTFLASPDTFT-MTDYDFGTLEHRLRELAFLNSGVRIVLTDKRHSDIK-----QEELL 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GGL+ +++     +  +  +      EK G    TVE A+ W +   E    + N I 
Sbjct: 115 YDGGLEAFVRYLDRAKKPLVDKPVAIHGEKDGI---TVEVALWWNDSYHENVLCFTNNIP 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  YAE +   +   +    +D       ILSV + +P+F+ 
Sbjct: 172 QRDGGTHMAGFRAALTRQMTSYAETSGIMKREKVSLQGEDCREGLTAILSVKVPDPKFSS 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTK KLVS + +  VE+ + +    +L ++P +A  L+  V+E +  R   RK RE   R
Sbjct: 232 QTKDKLVSSEVRPVVESLVNEALSTWLEEHPSDAKILVGKVVEAAIAREAARKARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADCS+     +ELF+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 292 KGALDIASLPGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVII 540
            A  +K+ ++Q+I  L+ ALG          + LRY K+II
Sbjct: 352 RARFDKMLSSQEIGTLITALGTSIGKDEFNADKLRYHKIII 392


>gi|27530797|dbj|BAC54046.1| DNA gyrase subunit B [Gordonia alkanivorans]
 gi|211927101|dbj|BAG82803.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 424

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 134/429 (31%), Positives = 212/429 (49%), Gaps = 38/429 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS ++ + +AR    ++Q +S   P +   ++     K G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTKVELEIARDGHNWTQTYSYAKPGAL--EQGDATRKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T + F PDP IF +   F+A  + +  Q  A+L+  +    +  +               
Sbjct: 59  TTVRFWPDPDIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEPPGDPNGDED 118

Query: 250 --------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
                         E A+    P+   +++P GL  Y++     +  I + +     + +
Sbjct: 119 APTTDVAEVVLSETEKAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGFSAKGE 178

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   +
Sbjct: 179 GH---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLIKE 235

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
           +   +  DD+      ++S  + +P+F GQTKTKL + + +  V+    +   H+   NP
Sbjct: 236 KDGKLTGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEANP 295

Query: 413 IEATKLLEWVIER-SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
            EA  +++   +        RR +  V RKTA     LPGKLADC  N     E++IVEG
Sbjct: 296 AEAKIIIKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEG 355

Query: 472 DSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE 531
           DSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++   
Sbjct: 356 DSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDIA 415

Query: 532 DLRYEKVII 540
            LRY K+++
Sbjct: 416 KLRYHKIVL 424


>gi|13359144|dbj|BAB33303.1| DNA gyrase B subunit [Marinobacterium stanieri]
          Length = 386

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 141/398 (35%), Positives = 218/398 (54%), Gaps = 17/398 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           TY++SGGLHGVG+SVVNALS +L +T+ R   +  Q +  G+P  PL+   +  +  GT 
Sbjct: 1   TYKVSGGLHGVGVSVVNALSSDLKLTIRRAGQVHEQIYHHGVPEEPLKIVGET-DLTGTI 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F+P  + F +   F    L K  +  ++L+  V+     ++   E       E F + 
Sbjct: 60  VRFKPSEETFTNI-QFQYDILAKRLRELSFLNSGVRIRLKDERSGRE-------EVFEYE 111

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTD 325
           GGL  +++   +N+S ++         + G     VE ++ W +   E    + N I   
Sbjct: 112 GGLAAFVEFLNQNKSPVNKIFHFNAMHENGV---GVEVSMQWNDSFQESLHCFANNIPQR 168

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH SG R ALTR +  Y E  Q  +   +S   DD       I+SV + +P+F+ QT
Sbjct: 169 DGGTHLSGFRTALTRCLNNYIESEQLNKTGKVSTSGDDSREGLTAIISVKVPDPKFSSQT 228

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKT 442
           K KLVS + +  VE  +    + YL++NP +A  +++ +I+ +  R   RK R    RK 
Sbjct: 229 KDKLVSSEVKTAVEQMMGQFLNEYLLENPQDAKAVVQKMIDAARAREAARKAREMTRRKG 288

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A
Sbjct: 289 ALDVAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKA 348

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
             +K+  + ++  L+ ALGC   R ++  + LRY ++I
Sbjct: 349 RFDKMLTSAEVGTLITALGCGIGREEFNPDKLRYHRII 386


>gi|297195944|ref|ZP_06913342.1| DNA gyrase subunit B [Streptomyces pristinaespiralis ATCC 25486]
 gi|197718839|gb|EDY62747.1| DNA gyrase subunit B [Streptomyces pristinaespiralis ATCC 25486]
          Length = 391

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 110/388 (28%), Positives = 181/388 (46%), Gaps = 13/388 (3%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
             A+  YDA+ I +LEGLE VR RPGM++G T E+ LH +  EV+  A++E +AG A  +
Sbjct: 2   SDAAHMYDATHIEVLEGLEVVRKRPGMWVGSTGERGLHQMVFEVVGRAVNENVAGRAGSV 61

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA-GGKFDNSTYEISGGLHG 156
            V+L  +G + V D+G G+P E   +      LE +LT +HA           +S   +G
Sbjct: 62  AVALMPDGEVRVTDDGPGVPAEAVGEAVG-PCLEDMLTRIHAQQDAGGRRAIAVSPLGNG 120

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           +G+ V NAL+  L   V R    + Q ++ G+ + P           G  + FRPD  IF
Sbjct: 121 LGLGVPNALASSLTAEVRRDGVRWVQVYASGVAVGPPTAAGPAVG-SGITLAFRPDAGIF 179

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                     L +  +  A+L+  +    S ++   E       E F+ PGG + ++   
Sbjct: 180 ET-VECSFDVLAERFRELAFLNRGLDISLSDERSAGE----CRSERFHSPGGTRDFVLLL 234

Query: 277 LENRSLIS--SEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESG 333
            E R   +       G   +     G VE A+ W + + E   +Y N+  T EGGTH  G
Sbjct: 235 GEGRGTGALVQTDVIGFEREDPRMAGAVEVALQWRDSDEERVRTYANSRPTPEGGTHAEG 294

Query: 334 LRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R  +   +  YA   +   +      +D +      ++SV + +P F G T  +L + +
Sbjct: 295 FRDGVAAAVNAYARQRRLLTSADADLGADRIGKGLTAVVSVKLDQPGFRGATCAELDNTE 354

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLL 419
           A+  VE A+R+    +L ++P +A  ++
Sbjct: 355 ARFGVEEAVREHLGIWLERHPEQAAAVI 382


>gi|308152477|dbj|BAJ22217.1| DNA gyrase subunit B [Rhodococcus globerulus]
          Length = 424

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 134/429 (31%), Positives = 212/429 (49%), Gaps = 38/429 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS ++ + +AR    ++Q +S   P +   ++     K G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTKVELEIARDGHNWTQTYSYAKPGAL--EQGDATRKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T + F PDP IF +   F+A  + +  Q  A+L+  +    +  +               
Sbjct: 59  TTVRFWPDPDIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEPPGDPNGDED 118

Query: 250 --------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
                         E A+    P+   +++P GL  Y++     +  I + +     + +
Sbjct: 119 APTTDVAEVVLSETEKAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGFSAKGE 178

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   +
Sbjct: 179 GH---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLIKE 235

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
           +   +  DD+      ++S  + +P+F GQTKTKL + + +  V+    +   H+   NP
Sbjct: 236 KDGKLTGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEANP 295

Query: 413 IEATKLLEWVIER-SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
            EA  +++   +        RR +  V RKTA     LPGKLADC  N     E++IVEG
Sbjct: 296 AEAKIIVKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEG 355

Query: 472 DSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE 531
           DSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++   
Sbjct: 356 DSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDIA 415

Query: 532 DLRYEKVII 540
            LRY K+++
Sbjct: 416 KLRYHKIVL 424


>gi|21238929|dbj|BAB96570.1| DNA gyrase subunit B [Nocardia asteroides]
          Length = 418

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 133/424 (31%), Positives = 211/424 (49%), Gaps = 34/424 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS +L   +      ++Q +    P      + +   + G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSKLEAEIDNDGYHWTQVYKDAKPGKL--VQGEATQRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T I F  DP+IF     ++   + +  Q  A+L+  +    +  +               
Sbjct: 59  TTIRFWADPEIFETTT-YNFETVSRRLQEMAFLNKGLTITLTDQRVSESDVIDEVVSDTA 117

Query: 250 ---EIAEKYGIPEKEE------FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
              + AE+      E       +++PGGL  +++     +  I + +     +  G    
Sbjct: 118 EAPKHAEEGVEKPVEHKVKTRTYHYPGGLVDFVRHINRTKQAIHNSVVGFTGKGTGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SI 357
            +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++
Sbjct: 175 ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKEKKLLKEKDGNL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  
Sbjct: 235 TGDDIREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRACNEHLTHWFEANPADAKT 294

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           +++  +  ++ R+  RK RE V RK+A     LPGKLADC        E++IVEGDSAGG
Sbjct: 295 IVQKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKCEIYIVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY 
Sbjct: 355 SAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYN 414

Query: 537 KVII 540
           K+I+
Sbjct: 415 KIIL 418


>gi|302746264|gb|ADL62722.1| GyrB [Morganella morganii subsp. sibonii]
          Length = 365

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 130/376 (34%), Positives = 200/376 (53%), Gaps = 15/376 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVN LS++L + + R   +  Q +  G P   L    +  +K GTR+ F
Sbjct: 1   VSGGLHGVGVSVVNPLSEKLELVIRRDGKVHEQIYRHGEPQDRLTIVGET-DKTGTRVRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P    F  +  F    L K  +  ++L+  V       ++  E       + F++ GG+
Sbjct: 60  WPSMNTFKGETEFQYDILAKRLRELSFLNSGVSIRLVDKRDGKE-------DHFHYEGGI 112

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K +++     ++ I + +F   TEK       VE ++ W +     +  + N I   +GG
Sbjct: 113 KAFVEYLSRAKTSIHNNVFYFSTEKDDI---GVEVSMQWNDSFQENVYCFTNNIPQRDGG 169

Query: 329 THESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
            H +G R A+TR +  Y E      K  +S   DD     V ++SV + +P+F+ QTK K
Sbjct: 170 AHLAGFRAAMTRTLNSYIEKEGLNKKSKVSTTGDDAREGLVAVISVKVPDPKFSSQTKDK 229

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIR 445
           LVS + +  VE  + +    YL +NP +   ++  +I+ +  R   R+ R    RK A+ 
Sbjct: 230 LVSSEVKTAVETLMNEKLSEYLDENPNDTKIIVGKIIDAARAREAARRAREMTRRKGALD 289

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +
Sbjct: 290 LAGLPGKLADCQERDPAFSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 349

Query: 506 KIRNNQQIMDLVQALG 521
           K+  +Q++  L+ ALG
Sbjct: 350 KMLGSQEVATLITALG 365


>gi|259018148|gb|ACV89666.1| DNA gyrase subunit B [Nocardia ignorata]
          Length = 415

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 130/421 (30%), Positives = 208/421 (49%), Gaps = 34/421 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS +L   +      ++Q +    P      + +  ++ G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSKLEAEIDNDGYHWTQVYKDSKPGKL--VQGEPTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK---------- 254
           T I F  DP+IF     ++   + +  Q  A+L+  +    + ++    +          
Sbjct: 59  TTIRFWADPEIFETTT-YNFETVARRLQEMAFLNKGLTITLTDERVSDSEVTDEVVSETA 117

Query: 255 --------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                             +   +++PGGL  +++     +S I + +     +  G    
Sbjct: 118 EAPKHADEVAAQAVEHKVKTRTYHYPGGLVDFVRHINRTKSAIHNSVVGFTGKGTGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SI 357
            +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++
Sbjct: 175 ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKEKKLLKEKDGNL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  
Sbjct: 235 TGDDIREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRACNEHLTHWFEANPADAKT 294

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           +++  +  ++ R+  RK RE V RK+A     LPGKLADC        E++IVEGDSAGG
Sbjct: 295 IVQKAVSSAQARMAARKARELVRRKSATDLGGLPGKLADCRSKDPGKCEIYIVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY 
Sbjct: 355 SAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYH 414

Query: 537 K 537
           K
Sbjct: 415 K 415


>gi|313747314|dbj|BAJ41204.1| DNA gyrase subunit B [Bacillus sp. 2B273-6XC]
          Length = 390

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 137/400 (34%), Positives = 211/400 (52%), Gaps = 14/400 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS E  V V R   + S KF RG  + PL           
Sbjct: 1   GGGYKVSGGLHGVGASVVNALSIETEVYVKRDGHVHSIKFERGQTVQPLTVIGDTDETG- 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T   F+ D  IF +   ++   L    +  AYL+  ++   + ++E   +        ++
Sbjct: 60  TTTRFKADADIFTETTVYEYDILATRVRELAYLNRGIRITIADEREEEVRSVT-----YH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTIL 323
           + GG+++Y++    N+  +   I     EK G    +VE A+ +       I S+ N I 
Sbjct: 115 YEGGIRSYVEHLNANKEPLHEPIDV-NGEKDGI---SVEIAMQYNAGFSSTIMSFANNIN 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHESG + ALTR I  YA      +    ++  +D+    + I+SV   +P+F G
Sbjct: 171 TYEGGTHESGFKTALTRVINDYARKNGLLKEADANLTGEDVREGLIAIVSVKHPDPQFEG 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNR 440
           QTKTKL + +  +   +   + F+ ++++NP  A +++E  ++        ++ +    R
Sbjct: 231 QTKTKLGNSEVSQITNSLFSEGFERFMLENPTVARQVVEKGLMAARARVAAKKAREFTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADCS      +E++IVEGDSAGGSAK  R+R  QA+LPLRGKILNV 
Sbjct: 291 KSALEVSSLPGKLADCSSTNPAESEIYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  ++I +N +I  ++ A G     ++  E  RY K+II
Sbjct: 351 KARLDRILSNAEIRAMITAFGTGIGEEFNLEKARYHKIII 390


>gi|119226156|dbj|BAF41057.1| DNA gyrase subunit B [Rhodococcus zopfii]
          Length = 421

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 132/427 (30%), Positives = 206/427 (48%), Gaps = 37/427 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS  L V +      + Q +    P      +       G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTRLEVEIDVDGYHWEQTYHASKPGEL--VRGAEAKATG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T + F  DP+IF     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTVRFWADPEIFETTT-YNFETVARRLQEMAFLNKGLTITLTDERVAPEEVTEEVVSELA 117

Query: 250 ------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                       +  E     +   +++PGGL+ Y++     +  I + +        G 
Sbjct: 118 EAPKTAEEQESEQSPEAPHKVKSRVYHYPGGLEDYVRHLNRTKQPIHNSVVGFTARGTGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRA 354
               +E A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +     + 
Sbjct: 178 ---ELEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLLKDKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
            ++  DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+L  NP +
Sbjct: 235 PNLTGDDIREGLAAIISVKVSEPQFEGQTKTKLGNTEVKSFVQKACNEHLTHWLESNPAD 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   +  ++ R+  RK RE V RK+A     LPGKLADC  N     E++IVEGDS
Sbjct: 295 AKTIVTKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPSKCEIYIVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    L
Sbjct: 355 AGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDISKL 414

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 415 RYHKIVL 421


>gi|269849457|gb|ACZ49797.1| DNA gyrase subunit B [Aeromonas caviae]
          Length = 374

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 138/386 (35%), Positives = 211/386 (54%), Gaps = 16/386 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P P IF D   F    L K  +  ++L+  V    + +++  E         F + GG+K
Sbjct: 60  PSPTIFSDTL-FHYEILAKRLRELSFLNSGVSIRLTDERDGRE-------AHFCYEGGIK 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGT
Sbjct: 112 AFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KL
Sbjct: 169 HLVGFRTALTRTLNNYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER-SEERLRRRKQREVNRKTAIRK 446
           VS + +  VE A+ +    +L++NP +A  ++  +I+        R+ +    RK A+  
Sbjct: 229 VSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAVRAREAARKARELTRRKGALDI 288

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 289 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 348

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED 532
           + ++Q++  L+ ALGC         D
Sbjct: 349 MISSQEVGTLITALGCGIGRDEYNPD 374


>gi|313574599|emb|CBX26152.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574601|emb|CBX26153.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574605|emb|CBX26155.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574607|emb|CBX26156.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574631|emb|CBX26168.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574633|emb|CBX26169.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574635|emb|CBX26170.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574655|emb|CBX26180.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
          Length = 392

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 143/401 (35%), Positives = 215/401 (53%), Gaps = 14/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS  L + + R   +    F+ G+  +PL    +   + G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGRSG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF   P+ F     +D   L    +  A+L+  V+   +  +    K     +EE  
Sbjct: 61  TEVTFLASPQTFT-MTDYDYGTLEHRLRELAFLNSGVRILLTDKRHSDIK-----QEELL 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GGL+ +++     +  +  +    K EK G    TVE A+ W +   E    + N I 
Sbjct: 115 YDGGLEAFVRYLDRAKKPLVDKPVAIKGEKDGI---TVEVALWWNDSYHENVLCFTNNIP 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  YAE +    K  +S+  +D       ILSV + +P+F+ 
Sbjct: 172 QRDGGTHMAGFRAALTRQVTSYAETSGILKKEKVSLQGEDCREGLTAILSVKVPDPKFSS 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNR 440
           QTK KLVS + +  VE+ + +    +L ++P +A  L+ + V         R+ +    R
Sbjct: 232 QTKDKLVSSEVRPVVESLVNEALSTWLEEHPSDARILVGKVVEAAVAREAARKARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADCS+     +ELF+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 292 KGALDIASLPGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVII 540
            A  +K+ ++Q+I  L+ ALG          + LRY K+II
Sbjct: 352 RARFDKMLSSQEIGTLITALGTSIGKDEFNADKLRYHKIII 392


>gi|119226138|dbj|BAF41048.1| DNA gyrase subunit B [Rhodococcus globerulus]
          Length = 411

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 132/417 (31%), Positives = 208/417 (49%), Gaps = 35/417 (8%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVGISVVNALS  L V +      + Q ++   P      +     + GT ++F  D
Sbjct: 1   GLHGVGISVVNALSTRLDVDIKVDGYEWHQTYTDSKPGEL--IQGPATKETGTTVSFWAD 58

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP-------------- 258
           P+IF     ++   + +  Q  A+L+  +    + ++                       
Sbjct: 59  PEIFETTR-YNFETVARRLQEMAFLNKGLTITLTDERAEVIDVDEESIDVAEAPKSAAET 117

Query: 259 -----------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307
                      +   +++PGGL+ Y++   +++S I + +     +  G     +E A+ 
Sbjct: 118 QEAAAAAPRKAKTRVYHYPGGLEDYVRHINKSKSPIHNSVVGFTAKGTGH---ELEVAMQ 174

Query: 308 WCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMI 364
           W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++  ++  DD+  
Sbjct: 175 WNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYARDKKLLKEKEQNLNGDDIRE 234

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
               I+SV + EP+F GQTKTKL + + +  V+ A  +   H+L  NP +A  ++   + 
Sbjct: 235 GLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQKACNEHLQHWLEANPADAKTIVNKAVS 294

Query: 425 RSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483
            ++ R+  RK RE V RK+A     LPGKLADC  N    +E++IVEGDSAGGSAK  R+
Sbjct: 295 SAQARIAARKARELVRRKSATDLGGLPGKLADCRSNDPEKSEIYIVEGDSAGGSAKSGRD 354

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
              QA+LPLRGKILNV  A  ++   N +I  ++ A G     ++    LRY K+++
Sbjct: 355 SMYQAILPLRGKILNVEKARLDRALKNTEIQSMITAFGTGIHDEFDIAKLRYHKIVL 411


>gi|211927079|dbj|BAG82792.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 418

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 133/424 (31%), Positives = 212/424 (50%), Gaps = 34/424 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS +L   +      ++Q +    P      + +   + G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSSKLEAEIDTDGYHWAQTYKDAKPGKL--IQGEPTKRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T I F  DP+IF     ++   + +  Q  A+L+  +    +  +               
Sbjct: 59  TTIRFWADPEIFETTT-YNFETVARRLQEMAFLNKGLTITLTDQRVSESDVTDEVVSDTA 117

Query: 250 ---EIAEKYGIPEKEE------FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
              + AE+      E       +++PGGL  +++     +  I + +     +  G    
Sbjct: 118 EAPKHAEEGVEKPVEHKVKTRTYHYPGGLVDFVRHINRTKQAIHNSVVGFTGKGTGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SI 357
            +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++
Sbjct: 175 ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKEKKLLKEKDGNL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  
Sbjct: 235 TGDDIREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRACNEHLTHWFEANPADAKT 294

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           +++  +  ++ R+  RK RE V RK+A     LPGKLADC        E++IVEGDSAGG
Sbjct: 295 IVQKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKCEIYIVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY 
Sbjct: 355 SAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYN 414

Query: 537 KVII 540
           K+I+
Sbjct: 415 KIIL 418


>gi|11078701|dbj|BAB17355.1| DNA gyrase subunit B [Pseudomonas fluorescens]
          Length = 388

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 144/400 (36%), Positives = 218/400 (54%), Gaps = 17/400 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P +P+          G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQAPMAIVGD-SETTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+I F+P  + F +   F    L K  +  ++L+  V      ++   E       E F 
Sbjct: 60  TQIHFKPSAETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKEERSGKE-------ELFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL+ +++    N++ ++         + G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLRAFVEYLNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH  G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    R
Sbjct: 229 QTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 349 KARFDKMISSQEVGTLITALGCGIGRDEYNIDKLRYHNII 388


>gi|323146984|gb|ADX32785.1| DNA gyrase B subunit [endophytic bacterium 18(2011)]
 gi|323146992|gb|ADX32789.1| DNA gyrase B subunit [endophytic bacterium 22(2011)]
 gi|323147000|gb|ADX32793.1| DNA gyrase B subunit [endophytic bacterium 20(2011)]
          Length = 238

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 87/250 (34%), Positives = 133/250 (53%), Gaps = 27/250 (10%)

Query: 76  HLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEI 132
           HL  EV+DN++DE +AGY N I+V +  +  +++ DNGRG+P          P +S  EI
Sbjct: 1   HLVFEVLDNSIDEALAGYCNDIQVIIHADNSISITDNGRGVPTGLKMDDKHEPKRSAAEI 60

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP--- 189
           ++T LHAGGKFD ++Y++SGGLHGVG+S VNALS  L +TV R       +F RG+P   
Sbjct: 61  VMTELHAGGKFDQNSYKVSGGLHGVGVSCVNALSAWLRLTVRRDGKKHFMEFHRGVPQNR 120

Query: 190 ---------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
                    +SP++   +  N RGT + F  D  IFG+   +    L K  +  ++L+  
Sbjct: 121 VIEEIGGIAVSPIQVVGETEN-RGTEVHFMADETIFGN-VEYHYDILAKRIRELSFLNNG 178

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
           V+   +  +   E         F F GG+K +++   + +S++   IF    EK G    
Sbjct: 179 VRIRLTDQRSGKEDD-------FAFVGGVKGFVEYINKTKSVLHPTIFHVSGEKDGV--- 228

Query: 301 TVEWAIAWCE 310
            VE A+ W +
Sbjct: 229 GVEVAMQWND 238


>gi|259018160|gb|ACV89672.1| DNA gyrase subunit B [Nocardia farcinica]
 gi|259018164|gb|ACV89674.1| DNA gyrase subunit B [Nocardia exalbida]
          Length = 415

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 129/421 (30%), Positives = 210/421 (49%), Gaps = 34/421 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  + V +      +SQ +    P   ++   +  ++ G
Sbjct: 1   SESYAVSGGLHGVGISVVNALSSRVEVEIDVDGYHWSQTYKEATPSKLVK--GEPTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK---------- 254
           T + F  DP+IF     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTVRFWADPEIFETTT-YNFETVARRLQEMAFLNKGLTITLTDERVSESDVTDEIVSETA 117

Query: 255 --------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                             +   +++PGGL+ +++     +  I + + +   +  G    
Sbjct: 118 EAPKHGEPTGEAASEHKVKTRTYHYPGGLEDFVRHINRTKQAIHNSVVSFTGKGTGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SI 357
            +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++
Sbjct: 175 ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  
Sbjct: 235 TGDDIREGLAAIVSVKVAEPQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKT 294

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           +++  +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGG
Sbjct: 295 IVQKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +K+  N ++  ++ A G     ++    LRY 
Sbjct: 355 SAKSGRDSMYQAILPLRGKIINVEKARIDKVLKNNEVQSIITAFGTGIHDEFDISKLRYH 414

Query: 537 K 537
           K
Sbjct: 415 K 415


>gi|259018140|gb|ACV89662.1| DNA gyrase subunit B [Nocardia lijiangensis]
          Length = 415

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 131/421 (31%), Positives = 208/421 (49%), Gaps = 34/421 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS  L   V      ++Q++    P   L+   +   + G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSRLEAEVDTDGYHWTQEYKDSKPGKLLQ--GEATKRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK---------- 254
           T I F PD +IF     F+   + +  Q  A+L+  +    + ++    +          
Sbjct: 59  TTIRFWPDSEIFETTT-FNFETVARRLQEMAFLNKGLTITLTDERVSESEVTDEVVSDTA 117

Query: 255 --------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                             +   +++PGGL+ +++     +  I + +     +  G    
Sbjct: 118 EAPKHLDENAPAAEAPKVKVRTYHYPGGLEDFVKHINRTKQPIHNSVVGFTGKGTGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SI 357
            +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++
Sbjct: 175 ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+SV I +P+F GQTKTKL + + +  V+    +   H+   NP +A  
Sbjct: 235 TGDDIREGLAAIVSVKISDPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKT 294

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           +++  +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGG
Sbjct: 295 IVQKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY 
Sbjct: 355 SAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYH 414

Query: 537 K 537
           K
Sbjct: 415 K 415


>gi|259018112|gb|ACV89648.1| DNA gyrase subunit B [Nocardia testacea]
          Length = 415

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 132/421 (31%), Positives = 209/421 (49%), Gaps = 34/421 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L   V      +SQ +   +P      + +     G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSSRLEAEVDTDGYHWSQTYKDAVPGQL--VQGEPTKATG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T I F  DP +F     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTIRFWADPAVFETTT-YNFETVSRRLQEMAFLNKGLTIVLTDERVSDTEITDEVVSDTA 117

Query: 250 ---EIAEKYGIPEKEE------FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
              +  +    P  E       +++PGGL+ +++     +  I + + +   +  G    
Sbjct: 118 EAPKHDDGGEKPAAEPKVKTRTYHYPGGLEDFVRHINRTKQPIHNSVVSFNGKGTGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SI 357
            +E A+ W       + ++ NTI T EGGTHE G R ALT  + +YA+  +  +    ++
Sbjct: 175 ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNRYAKEKKLLKEKDGNL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  
Sbjct: 235 TGDDIREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRACNEHLAHWFEANPADAKT 294

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGG
Sbjct: 295 IVNKAVSSAQARVAARKARELVRRKSATDIGGLPGKLADCRSKDPSKSEIYIVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +K+  N ++  ++ A G     ++    LRY 
Sbjct: 355 SAKSGRDSMYQAILPLRGKIINVEKARIDKVLKNAEVQSIITAFGTGIHDEFDIAKLRYH 414

Query: 537 K 537
           K
Sbjct: 415 K 415


>gi|27530789|dbj|BAC54042.1| DNA gyrase subunit B [Gordonia sp. MBIC04145]
          Length = 435

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 136/441 (30%), Positives = 213/441 (48%), Gaps = 51/441 (11%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS ++ + +A   + +SQ ++R +P    +       K G
Sbjct: 1   SEAYAVSGGLHGVGISVVNALSTKVELAIAYGGSHWSQTYTRAVPGPLEKGAG--TRKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T + F  DP IF     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTVRFWADPDIFETT-DYNFETIARRLQEMAFLNKGLTITLTDERPKVVNDVDDVEQAEA 117

Query: 250 --------------------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
                                        +  G P    +++PGGL  Y+      +S I
Sbjct: 118 IGAAAESADEATDVADGDAIVEPGPDTEKKDPGKPRTRTYHYPGGLMDYVAHLNRTKSPI 177

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
            + I     +  G     +E A+ W       + ++ NTI T EGGTHE G R ALT  +
Sbjct: 178 HASIVGFTAKGTGH---ELEVAMQWNGGYSESVHTFANTINTHEGGTHEEGFRAALTSTV 234

Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
            KYA   +   ++   +  DD+      ++SV + +P+F GQTKTKL + + +  V+   
Sbjct: 235 NKYALDKKLLKEKDPKLTGDDIREGLAAVISVKVADPQFEGQTKTKLGNTEVKSFVQKVS 294

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQN 459
            +   H+L  NP EA  ++   +  ++ RL  RK RE V RK+A     LPGKLADC  N
Sbjct: 295 NEHLSHWLESNPAEAKIIINKAVGSAQARLAARKARELVRRKSATDIGGLPGKLADCRSN 354

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
                E++IVEGDSAGGSAK  R+   QA+LP+RGKI+NV  A  +++  N ++  ++ A
Sbjct: 355 DPARCEVYIVEGDSAGGSAKSGRDSMYQAILPIRGKIINVEKARIDRVLKNAEVQSIITA 414

Query: 520 LGCRTRSQYREEDLRYEKVII 540
            G     ++    LRY K+++
Sbjct: 415 FGTGIHDEFDLAKLRYHKIVL 435


>gi|307149444|gb|ADN38375.1| DNA gyrase B [Pseudoalteromonas sp. CMMED769]
          Length = 388

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 132/398 (33%), Positives = 217/398 (54%), Gaps = 14/398 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKFD+++Y++SGGLHGVG+SVVNALS++L +T+ R   +  QK++ G+P +PL    
Sbjct: 1   HAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLQLTIRRDGEVHQQKYTMGVPDAPLAVIG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +     GT + F P P+ F D   F    L K  +  ++L+  V    + ++E       
Sbjct: 61  EA-ESTGTELRFWPSPETFSDIN-FHYDILAKRLRELSFLNSGVSIILTDERE------E 112

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
            + + F + GG++ +++     ++ +   +F   TE++     +VE ++ W +     I 
Sbjct: 113 NKNDHFKYEGGIQAFVEYLNRKKTPVHQHVFHFTTERED--GISVEVSMQWNDGFQENIY 170

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFI 374
            + N I   +GGTH +G R ALTR +  Y E      K   S   DD       ++SV +
Sbjct: 171 CFTNNIPQRDGGTHLAGFRAALTRTLNTYMEKEGFNKKNKTSATGDDAREGLTAVVSVKV 230

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            +P+F+ QTK KLVS + +  VE A+ +  + +L++NP +A  ++  +++ +  R   RK
Sbjct: 231 PDPKFSSQTKDKLVSSEVKGAVEQAMAEKLNEFLLENPQDAKTVVNKIVDAARAREAARK 290

Query: 435 QREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            RE+ R+   +    LPGKLADC +     +EL+IVEGDSAGG AKQ R+R    ++P++
Sbjct: 291 AREMTRRKGVMDLAGLPGKLADCQEKDPALSELYIVEGDSAGGYAKQGRSRKIHQIVPIK 350

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE 531
           GKILNV  A   K+ ++ +   +   LG        + 
Sbjct: 351 GKILNVEQARLIKMSSSHEDGGVPTVLGGGIGRAEYDP 388


>gi|29652667|gb|AAO87303.1| DNA gyrase B [Listeria monocytogenes]
          Length = 173

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 82/175 (46%), Positives = 110/175 (62%), Gaps = 2/175 (1%)

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++
Sbjct: 1   SSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDR 60

Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
           I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ M  L
Sbjct: 61  ILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPL 120

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
           ++  ++++  PPL++I  G +  Y + +   +  L      G  K  I R+KGLG
Sbjct: 121 LDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYKGLG 173


>gi|3320890|gb|AAC26518.1| DNA gyrase beta-subunit [Aeromonas hydrophila]
          Length = 392

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 150/404 (37%), Positives = 230/404 (56%), Gaps = 18/404 (4%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVAR-QNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           D+++Y+ SGGLHGVG+SVVNALSD+L +T+A    T++ Q +  G P +P+++       
Sbjct: 1   DDNSYKASGGLHGVGVSVVNALSDKLLLTIACVTATVYKQTYHLGEPQAPIKQIGDSTG- 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT + F P P IF D        L K  +  ++L+  V      +++  E         
Sbjct: 60  TGTEVRFWPSPAIFSDTL-IHYEILAKRLRELSFLNSGVFIRLQDERDGRE-------AH 111

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNT 321
           F + GG+K +++   +N++ I  ++F   TE+ G     VE A+ W +   + +  + N 
Sbjct: 112 FCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDTYQDGVYCFTNN 168

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH  GLR  LTR +  Y +      K   +   DD+    + ++SV + +P+F
Sbjct: 169 IPERDGGTHLDGLRTVLTRTLNSYMDKKDYSKKAKSAASGDDVRKGLIAVISVKVPDPKF 228

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-V 438
           + QTK KLVS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE  
Sbjct: 229 SSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELT 288

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILN
Sbjct: 289 RRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILN 348

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIM 541
           V  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIM
Sbjct: 349 VEKARFDKMISSQEVGTLITALGCGIGRDEYNPDKLRYHNIIIM 392


>gi|159146572|gb|ABW90730.1| DNA gyrase beta subunit [Photobacterium damselae]
          Length = 378

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 138/386 (35%), Positives = 212/386 (54%), Gaps = 14/386 (3%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS+++ +T+ R   I  Q +  G+P +PLE      ++ GT I F 
Sbjct: 1   SGGLHGVGVSVVNALSEKVELTIYRHGHIHRQIYRHGVPQAPLEVIGDT-DRTGTTIRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F    L K  +  ++L+  V    + ++E        +++ F + GG++
Sbjct: 60  PSSETFTNTT-FQYEILAKRLRELSFLNSGVSIKLNDERE------EGKQDHFMYEGGIQ 112

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++    N++ I  ++F    E++     TVE A+ W +     I  + N I   +GGT
Sbjct: 113 AFVEHLNRNKTPIHQKVFHFNVERED--GITVEVAMQWNDGFQENIYCFTNNIPQRDGGT 170

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R ALTR +  Y E      K   +   DD       ++SV + +P+F+ QTK KL
Sbjct: 171 HLAGFRGALTRTLNNYMEKEGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQTKDKL 230

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRK 446
           VS + +  VE+ + +    +L++NP +A  +   +I+ S  R   RK R    RK A+  
Sbjct: 231 VSSEVKSAVESTMGEKLGEFLLENPSDAKTVCTKIIDASRAREAARKAREMTRRKGALDL 290

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 291 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 350

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED 532
           + ++Q++  L+ A+GC         D
Sbjct: 351 MLSSQEVATLITAMGCGIGRDEYNPD 376


>gi|83415016|dbj|BAE53772.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 400

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 150/406 (36%), Positives = 218/406 (53%), Gaps = 16/406 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
             +Y++SGGLHGVG+S VNALS  L   V R   I++Q+FS G   + L    +  + RG
Sbjct: 1   KDSYKVSGGLHGVGVSCVNALSAYLKAEVRRDGKIYTQEFSCGKATNVLTVIGETND-RG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I+F+PD  IF     +    L    +  ++L+  VK   +  +      G  + + FY
Sbjct: 60  TTISFKPDSSIFIVT-EYKYDILASRLRELSFLNAGVKLELTD-RRTLLVGGDYKHDTFY 117

Query: 265 FPGGLKTYLQTKLENRSL-ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
              GL  +++     +   I  +I    TEK+G     VE A+ +       I+SY N I
Sbjct: 118 SSAGLNEFVRFIDAAKEPLIGKDIIHIVTEKQGIP---VEVAMTYNTSYNESISSYVNNI 174

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T E GTH SG R ALTR +KKYA  ++   K  I I  DD       ++S+ ++EP+F 
Sbjct: 175 NTVEHGTHVSGFRRALTRTLKKYAVDSKLLEKVKIEISPDDFREGLTAVISIKVQEPQFE 234

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +    V+ A+ +   +YL ++P EA  +++ VI  +  R   R  RE+ +
Sbjct: 235 GQTKTKLGNNEVTGAVDQAVGEALGNYLEEHPKEAKIIVDKVILAATARHAARNAREMVQ 294

Query: 441 KTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           + + +    LPGKLADCS       E+F+VEGDSAGG+AKQ R+R  QA+LPLRGKILNV
Sbjct: 295 RKSPLAGGGLPGKLADCSDKDPERCEIFLVEGDSAGGTAKQGRDRKYQAILPLRGKILNV 354

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQY-----REEDLRYEKVII 540
             A   K+  + +I ++  ALG    +         E LRY KV+I
Sbjct: 355 EKAMPHKVFESVEIRNIFIALGVTIGTSEDSKELNIEKLRYHKVVI 400


>gi|32364170|gb|AAP80233.1| GyrB [Pasteurella canis]
          Length = 382

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 145/394 (36%), Positives = 221/394 (56%), Gaps = 17/394 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS +L +T+ RQ  +  Q +  G P +PL    +  ++ GT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSGKLQLTIRRQGKVHEQIYHLGEPEAPLAAIGET-DQTGTS 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F P P IF +   F+   L K  +  ++L+  V       +          ++ F++ 
Sbjct: 60  VRFWPSPTIFNNI-EFEYDILAKRLRELSFLNSGVSIKLFDKR-------NDRQDHFHYE 111

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG++ +++    N++ I  + F   TEK G     VE ++ W +     +  + N I   
Sbjct: 112 GGIQAFVEYLNRNKNPIHQKPFYFSTEKDGI---GVEVSMQWNDSFNENVYCFTNNIPQR 168

Query: 326 EGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G  VALTR +  Y E      K  ++   DD     V I+SV + +P+F+ QT
Sbjct: 169 DGGTHLAGYPVALTRSLNNYIENEGHNKKSKVATSGDDAREGLVAIISVKVPDPKFSSQT 228

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKT 442
           K KLVS + +  VE+ + +    YL++NP +A  ++  +I+ +  R   RK R    RK 
Sbjct: 229 KDKLVSSEVKSAVESVMNEYLQQYLLENPSDAKIIVGKIIDAARAREAARKAREMTRRKG 288

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 289 ALDLGGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 348

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRY 535
             +K+ ++ ++  L+ ALGC   R +Y  E LRY
Sbjct: 349 RFDKMLSSAEVGTLITALGCGIGRDEYNPEKLRY 382


>gi|119226178|dbj|BAF41068.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 417

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 131/423 (30%), Positives = 212/423 (50%), Gaps = 33/423 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L   +      ++Q++    P      +     + G
Sbjct: 1   SESYAVSGGLHGVGISVVNALSTRLQADIDYGGYHWTQEYKDAKPGKL--VQGDPTKRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA---------EKY 255
           T I F  DP IF     ++   + +  Q  A+L+  +    +  +            E  
Sbjct: 59  TTIRFWADPNIFETTY-YNFETVSRRLQEMAFLNKGLTITLTDQRVSDSEITEEVVSETA 117

Query: 256 GIPEKE--------------EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
             P+ E               +++PGGL+ +++     +  I + +    ++  G     
Sbjct: 118 EAPKHEGEAATVTEQKVKTRTYHYPGGLEDFVKHINRTKQAIHNTVVGFTSKGTGH---E 174

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISII 358
           +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +   ++  ++ 
Sbjct: 175 LEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLIKEKDGNLT 234

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+      I+SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  +
Sbjct: 235 GDDIREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRTCNENLAHWFEANPADAKTI 294

Query: 419 LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           ++  +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGS
Sbjct: 295 VQKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPRLSEIYIVEGDSAGGS 354

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  R+   QA+LP+RGKI+NV  +  +K+  N ++  ++ A G     ++    LRY K
Sbjct: 355 AKSGRDSMYQAILPIRGKIINVEKSRIDKVLKNIEVQSIITAFGTGIHDEFDISKLRYHK 414

Query: 538 VII 540
           +I+
Sbjct: 415 IIL 417


>gi|308153170|dbj|BAJ22174.1| DNA gyrase subunit B [Mycobacterium nonchromogenicum]
          Length = 419

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 133/424 (31%), Positives = 209/424 (49%), Gaps = 35/424 (8%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y +SGGLHGVG+SVVNALS  L   +      + Q + + +P +  +   +   K GT
Sbjct: 2   GAYSVSGGLHGVGVSVVNALSTRLEADINVDGYQWFQTYDKSVPGTLRK--GEKTKKTGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY---------- 255
            I F  DP IF     +D   + +  Q  A+L+  +    + ++   E+           
Sbjct: 60  TIRFWADPDIFETTT-YDFETVARRLQEMAFLNKGLTIELTDERVRVEEVVDEVVSDTAE 118

Query: 256 ---------------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                             +   F++PGGL+ ++     +++ I   I     +  G    
Sbjct: 119 APKTAEEQAAEATAPHKVKHRVFHYPGGLRDFVAHINRSKTAIHPTIIDFDGKGTGH--- 175

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISI 357
            VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +     +  ++
Sbjct: 176 EVEIAMQWNGGYSESVHTFANTINTAEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNL 235

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP EA  
Sbjct: 236 TGDDIREGLAAVISVKVSQPQFEGQTKTKLGNTEVKSFVQKVCNEQLGHWFEANPAEAKV 295

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   +  ++ R+  RK RE V RK+A     LPGKLADC  N    +EL++VEGDSAGG
Sbjct: 296 IINKAVSSAQARMAARKARELVRRKSATDLGGLPGKLADCRSNDPTKSELYVVEGDSAGG 355

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY 
Sbjct: 356 SAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNNEVQAIITALGTGIHDEFDISKLRYH 415

Query: 537 KVII 540
           K+++
Sbjct: 416 KIVL 419


>gi|308153054|dbj|BAJ22116.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 418

 Score =  204 bits (518), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 129/424 (30%), Positives = 211/424 (49%), Gaps = 34/424 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L V +      + Q ++   P      +     + G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLDVDIKVDGYRWQQTYTDSKPGEL--VQGDPTKETG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T ++F  DP+IF     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTVSFWADPEIFETTR-YNFETVARRLQEMAFLNKGLTITLTDERAEVIDDEAAEVAEAP 117

Query: 250 ---------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                             +   +++PGGL+ Y++   ++++ I + +     +  G    
Sbjct: 118 KSAAEEAEEAAQAAPRKSKTRIYHYPGGLEDYVRHINKSKTPIHNSVVGFTAKGTGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISI 357
            +E A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +     +   +
Sbjct: 175 ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTATVNKYALEKKLLKDKDPKL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  
Sbjct: 235 TGDDIREGLAAIISVKVGEPQFEGQTKTKLGNTEVKSFVQKACNEHLAHWFEANPADAKT 294

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   +  ++ R+  RK RE V RK+A     LPGKLADC  N    +E++IVEGDSAGG
Sbjct: 295 IVNKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPEKSEIYIVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    +RY 
Sbjct: 355 SAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDIAKVRYH 414

Query: 537 KVII 540
           K+++
Sbjct: 415 KIVL 418


>gi|308153082|dbj|BAJ22130.1| DNA gyrase subunit B [Rhodococcus rhodochrous]
          Length = 415

 Score =  204 bits (518), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 130/421 (30%), Positives = 209/421 (49%), Gaps = 34/421 (8%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y +SGGLHGVGISVVNALS  L V +      + Q ++   P      +     + GT 
Sbjct: 1   SYAVSGGLHGVGISVVNALSTRLDVDIKVDGYRWQQTYTDSKPGEL--VQGDPTKETGTT 58

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK----------------- 249
           ++F  DP+IF     ++   + +  Q  A+L+  +    + ++                 
Sbjct: 59  VSFWADPEIFETTR-YNFETVARRLQEMAFLNKGLTITLTDERAEVIDDEAAEVAEAPKS 117

Query: 250 -------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
                           +   +++PGGL+ Y++   ++++ I + +     +  G     +
Sbjct: 118 AAEEAEEAAQAAPRKSKTRIYHYPGGLEDYVRHINKSKTPIHNSVVGFTAKGTGH---EL 174

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIIS 359
           E A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +     +   +  
Sbjct: 175 EVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTATVNKYALEKKLLKDKDPKLTG 234

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  ++
Sbjct: 235 DDIREGLAAIISVKVGEPQFEGQTKTKLGNTEVKSFVQKACNEHLAHWFEANPADAKTIV 294

Query: 420 EWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
              +  ++ R+  RK RE V RK+A     LPGKLADC  N    +E++IVEGDSAGGSA
Sbjct: 295 NKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPEKSEIYIVEGDSAGGSA 354

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538
           K  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K+
Sbjct: 355 KSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDIAKLRYHKI 414

Query: 539 I 539
           +
Sbjct: 415 V 415


>gi|32480593|gb|AAP83862.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 392

 Score =  204 bits (518), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 147/403 (36%), Positives = 228/403 (56%), Gaps = 16/403 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKFD+++Y++SGGLHGVG+SVVNALS+ L + + R    + Q++  G P  PL++  
Sbjct: 1   HAGGKFDDNSYKVSGGLHGVGVSVVNALSERLWLDIWRDGYHYQQEYVLGDPQYPLKQL- 59

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +V  KRGT + F+P  +IF D   F    L K  +  ++L+  +K     ++        
Sbjct: 60  EVSAKRGTTLRFKPAKEIFSD-VEFHYENLAKRLRELSFLNSGLKVSLIDERG------E 112

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
             +++F++ GG++++++   + ++ + S + +   E  G     V+ A+ W +     + 
Sbjct: 113 GRRDDFHYEGGIRSFVEHLAQLKTPLHSNVISVTGEHNGI---VVDVALQWTDAYQETMY 169

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFI 374
            + N I   +GGTH +G R ALTR +  Y E     R   I    DD+    + +LSV +
Sbjct: 170 CFTNNIPQKDGGTHLAGFRAALTRTLGNYIEQNGIARQAKITFSGDDMREGMIAVLSVKV 229

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP F+  TK KLVS D +  VE       + +L +NP EA  +   +++ +  R   RK
Sbjct: 230 PEPSFSSPTKEKLVSSDVKPAVEATFGLRLEEFLQENPNEARAIAGKIVDAARAREAARK 289

Query: 435 QREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            R++ R+   +    LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR NQAVLPLR
Sbjct: 290 ARDLTRRKGVLDIAGLPGKLADCQEKDPAMSELFIVEGDSAGGSAKQGRNRKNQAVLPLR 349

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRY 535
           GKILNV  A  +++ ++ ++  L+ ALG    + +Y  + LRY
Sbjct: 350 GKILNVERARFDRMLSSAEVGTLITALGTGIGKDEYNPDKLRY 392


>gi|261343282|gb|ACX70142.1| DNA gyrase subunit B [Nocardia acidivorans]
          Length = 415

 Score =  204 bits (518), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 129/421 (30%), Positives = 204/421 (48%), Gaps = 33/421 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS  L   V      ++Q++    P      + +   + G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSRLEAEVDTDGYHWTQEYKDSKPGKL--VQGEATKRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK---------- 254
           T I F  DP IF     ++   + +  Q  A+L+  +    +  +               
Sbjct: 59  TTIRFWSDPNIFETTV-YNFETVARRLQEMAFLNKGLTITLTDQRVADTDLTDEVVSDTA 117

Query: 255 -------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
                            +   +++PGGL+ +++     +  I + +     +  G     
Sbjct: 118 EAPKHLDENAPAATPKVKTRTYHYPGGLEDFVKHINRTKQPIHNSVVGFTGKGTGH---E 174

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SII 358
           +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++ 
Sbjct: 175 LEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKEGNLT 234

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+      I+SV I +P+F GQTKTKL + + +  V+    +   H+   NP +A  +
Sbjct: 235 GDDIREGLAAIVSVKISDPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTI 294

Query: 419 LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           +   +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGS
Sbjct: 295 VTKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPVKSEIYIVEGDSAGGS 354

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  R+   QA+LPLRGKI+NV  +  +K+  N ++  ++ A G     ++    LRY K
Sbjct: 355 AKSGRDSMYQAILPLRGKIINVEKSRIDKVLKNNEVQAIITAFGTGIHDEFDIAKLRYHK 414

Query: 538 V 538
           +
Sbjct: 415 I 415


>gi|313574623|emb|CBX26164.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
          Length = 392

 Score =  204 bits (518), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 142/401 (35%), Positives = 215/401 (53%), Gaps = 14/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS  L + + R   +    F+ G+  +PL    +   + G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGRSG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF   P+ F     +D   L    +  A+L+  V+   +  +    K     +EE  
Sbjct: 61  TEVTFLASPQTFT-MTDYDYGTLEHRLRELAFLNSGVRILLTDKRHSDIK-----QEELL 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GGL+ +++     +  +  +    + EK G    TVE A+ W +   E    + N I 
Sbjct: 115 YDGGLEAFVRYLDRAKKPLVDKPVAIRGEKDGI---TVEVALWWNDSYHENVLCFTNNIP 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  YAE +    K  +S+  +D       ILSV + +P+F+ 
Sbjct: 172 QRDGGTHMAGFRAALTRQVTSYAETSGILKKEKVSLQGEDCREGLTAILSVKVPDPKFSS 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNR 440
           QTK KLVS + +  VE+ + +    +L ++P +A  L+ + V         R+ +    R
Sbjct: 232 QTKDKLVSSEVRPVVESLVNEALSTWLEEHPSDARILVGKVVEAAVAREAARKARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADCS+     +ELF+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 292 KGALDIASLPGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVII 540
            A  +K+ ++Q+I  L+ ALG          + LRY K+II
Sbjct: 352 RARFDKMLSSQEIGTLITALGTSIGKDEFNADKLRYHKIII 392


>gi|27530793|dbj|BAC54044.1| DNA gyrase subunit B [Gordonia alkanivorans]
          Length = 424

 Score =  204 bits (518), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 134/429 (31%), Positives = 212/429 (49%), Gaps = 38/429 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS ++ + +AR    ++Q +S   P +   ++     K G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTKVELEIARDGHNWTQAYSYAKPGAL--EQGDATRKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T + F PDP IF +   F+A  + +  Q  A+L+  +    +  +               
Sbjct: 59  TTVRFWPDPDIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEPPGDPNGDED 118

Query: 250 --------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
                         E A+    P+   +++P GL  Y++     +  I + +     + +
Sbjct: 119 APTTDVAEVVLSETEKAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGFSAKGE 178

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   +
Sbjct: 179 GH---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLIKE 235

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
           +   +  DD+      ++S  + +P+F GQTKTKL + + +  V+    +   H+   NP
Sbjct: 236 KDGKLTGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEANP 295

Query: 413 IEATKLLEWVIER-SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
            EA  +++   +        RR +  V RKTA     LPGKLADC  N     E++IVEG
Sbjct: 296 AEAKIIIKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEG 355

Query: 472 DSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE 531
           DSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++   
Sbjct: 356 DSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDIA 415

Query: 532 DLRYEKVII 540
            LRY K+++
Sbjct: 416 KLRYHKIVL 424


>gi|19912119|dbj|BAB88371.1| DNA gyrase subunit B [marine CFB-group bacterium MBIC01599]
          Length = 390

 Score =  204 bits (518), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 144/388 (37%), Positives = 214/388 (55%), Gaps = 10/388 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+S VNALS +L  TV R   I  Q+F  GIP  P ++  K  ++RGT I F
Sbjct: 1   VSGGLHGVGVSCVNALSTDLKATVYRNGVITEQEFKIGIPQYPAKETGKT-DRRGTTIHF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +PD  IF     +    +    +  AYL+  ++      +E  E+ G P+ +EFY  GGL
Sbjct: 60  KPDDSIFTVT-EYKYETIANRLREMAYLNAGIRIFLKDLRE-IEEDGNPKSDEFYSEGGL 117

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGG 328
             ++Q   E R  I       ++  +      V+ A+++     E   SY NTI T EGG
Sbjct: 118 VEFVQYLDETREKIIEAPIYIESIDQDVP---VQVAMSYNSSYSENVVSYVNTINTYEGG 174

Query: 329 THESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +K YA+ +    K  I +  DD       ++SV + EP+F GQTKTK
Sbjct: 175 THVTGFRRALTRTLKSYADKSGMLDKLKIEVSGDDFREGLTAVISVKVAEPQFEGQTKTK 234

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L + D    V++A+ +    +L ++P EA  ++  VI  ++ R   RK RE+ ++  +  
Sbjct: 235 LGNSDVVGAVDSAVSEVLQTWLEEHPKEAKTIVGKVILAAQARHAARKAREMVQRKNVLG 294

Query: 447 LRLPGKL-ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
                   ADC+ +     EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A   
Sbjct: 295 GGGLPGKLADCANSDPTVCELYLVEGDSAGGSAKQGRDRDFQAILPLKGKILNVEKAHEH 354

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDL 533
           KI +N +I +++ ALG +  +   +++L
Sbjct: 355 KIYDNDEIKNILTALGVKFGTVNDDKEL 382


>gi|325128704|gb|EGC51568.1| DNA topoisomerase 4 subunit B [Neisseria meningitidis N1568]
          Length = 180

 Score =  204 bits (518), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 66/182 (36%), Positives = 95/182 (52%), Gaps = 16/182 (8%)

Query: 517 VQALGCRTRSQYREEDL---RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
              +G          DL   RY K+ I++DADVDG+HI  LLLT FY+    L+   H++
Sbjct: 1   FSCIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHFPKLVADGHIY 60

Query: 574 LISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEISRFKGLGEML 624
           +  PPLFR+    QG     +  YA D+     ILE  +K G  +    ISRFKGLGEM 
Sbjct: 61  VAQPPLFRVDVNAQGKSKPARKFYALDQNELDSILERLQKEGVKETAYSISRFKGLGEMN 120

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQERASFIDD 683
             QLK+T M  + R LL+V+I +  +   +T+D   KLMG  +A  R  +++      + 
Sbjct: 121 PDQLKDTTMHPDTRRLLQVQIPEGADD--ETRDIFVKLMGKGEAAARRAWMEREGDTAE- 177

Query: 684 VG 685
           + 
Sbjct: 178 LD 179


>gi|259018106|gb|ACV89645.1| DNA gyrase subunit B [Nocardia uniformis]
          Length = 415

 Score =  204 bits (518), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 134/421 (31%), Positives = 209/421 (49%), Gaps = 34/421 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L   + R    +SQ++    P      +     ++G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLQAEIDRDGYHWSQEYKDSKPGKL--VQGDTTKRKG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T I F  DP IF     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTIRFWADPNIFETTT-YNFETVARRLQEMAFLNKGLTITLTDERVSEGDVTDEVVSDTA 117

Query: 250 ---------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                      A      +   +++PGGL+ Y++     ++ I + I     +  G    
Sbjct: 118 EAPKHADETAAAAATPKVKTRTYHYPGGLEDYVKHINRTKTPIHNSIVAFTGKGTGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SI 357
            +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++
Sbjct: 175 ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  
Sbjct: 235 TGDDIREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRACNEHLGHWFEANPADAKT 294

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGG
Sbjct: 295 IVTKAVSSAQARMAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  +  +K+  N ++  ++ A G     ++    LRY 
Sbjct: 355 SAKSGRDSMYQAILPLRGKIINVEKSRIDKVLKNNEVQAIITAFGTGIHDEFDLAKLRYH 414

Query: 537 K 537
           K
Sbjct: 415 K 415


>gi|317420212|emb|CBW30263.1| gyrase B subunit [Pseudoalteromonas marina]
          Length = 384

 Score =  204 bits (518), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 140/393 (35%), Positives = 216/393 (54%), Gaps = 16/393 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS++L +TV R+  +  Q ++ G+P +PL          GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSEKLKLTVRREGKLHEQFYTMGVPDAPLAVIGD-SETTGTELRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F    L K  +  ++L+  V    + ++E        + + F + GG++
Sbjct: 60  PSAETFTNL-DFHYDILAKRLRELSFLNSGVSIILNDERE------ENKSDHFKYEGGIQ 112

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++    N++ I   +F    E+      +VE ++ W +     I  + N I   +GGT
Sbjct: 113 AFVEYINRNKTPIHKGVFHFTHER-VEDGISVEVSMQWNDAYQENIYCFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYA----ELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           H +G R ALTR +  +        + K   +   DD       ++SV + +P+F+ QTK 
Sbjct: 172 HLAGFRSALTRTLNNFMEKEGFNKKAKTTSNATGDDAREGLTAVISVKVPDPKFSSQTKD 231

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAI 444
           KLVS + +  VE A+ + F  +L++NP++A  ++  +I+ S  R   RK R    RK A+
Sbjct: 232 KLVSSEVKSAVEQAMAEKFTEFLLENPVDAKIVVGKIIDASRAREAARKAREMTRRKGAM 291

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               L GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  
Sbjct: 292 DLAGLRGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARF 351

Query: 505 EKIRNNQQIMDLVQALGCRT-RSQYREEDLRYE 536
           +K+ ++Q++  L+ ALGC   R +Y  E LRY 
Sbjct: 352 DKMLSSQEVATLITALGCGIGRDEYNPEKLRYH 384


>gi|302746272|gb|ADL62726.1| GyrB [Morganella psychrotolerans]
          Length = 389

 Score =  204 bits (518), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 132/399 (33%), Positives = 213/399 (53%), Gaps = 16/399 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNAL+++L + + R+  +  Q +  G P   L    +  +K G
Sbjct: 2   DNSYKVSGGLHGVGVSVVNALTEKLELVIRREGKVHEQIYRHGEPQGHLAVVGET-DKTG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           TR+ F P    F  +  F+   L K  +  ++L+  V       ++  E       + F+
Sbjct: 61  TRVRFWPSMDTFKTETEFEYEILAKRLRELSFLNSGVSIRLIDKRDGKE-------DHFH 113

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++     ++ I + +F   TEK       VE A+ W +     +  + N I 
Sbjct: 114 YDGGIKAFVEYLSRAKTSIHNNVFYFSTEKDNI---NVEVAMQWNDSFQENVYCFTNNIP 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GG H +G         + + E      K  +S   DD     V ++SV + +P+F+ 
Sbjct: 171 QRDGGAHLAGFPCGNDPYSQSFIEKEGLNKKAKVSTTGDDAREGLVAVISVKVPDPKFSS 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE+ + +    YL +NP +   ++  +I+ +  R   R+ R    R
Sbjct: 231 QTKDKLVSSEVKTAVESIMNEKLSEYLDENPNDTKIIVGKIIDAARAREAARRAREMTRR 290

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 291 KGALDLAGLPGKLADCQERDPAHSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 350

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
            A  +K+  +Q++  L+ ALG    R +Y  + LRY ++
Sbjct: 351 KARFDKMLASQEVATLITALGSGIGRDEYNPDKLRYHRI 389


>gi|32480597|gb|AAP83864.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 392

 Score =  203 bits (517), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 148/403 (36%), Positives = 229/403 (56%), Gaps = 16/403 (3%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKFD+++Y++SGGLHGVG+SVVNALS+ L + + R    + Q++  G P  PL++  
Sbjct: 1   HAGGKFDDNSYKVSGGLHGVGVSVVNALSERLWLDIWRDGYHYQQEYVLGDPQYPLKQL- 59

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +V  KRGT + F+P  +IF D   F    L K  +  ++L+  ++     ++        
Sbjct: 60  EVSAKRGTTLRFKPAKEIFSD-VEFHYENLAKRLRELSFLNSGLQVSLIDERG------E 112

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
             +++F++ GG++++++   + ++ + S + +   E  G     V+ A+ W +     I 
Sbjct: 113 GRRDDFHYEGGIRSFVEHLAQLKTPLHSNVISVTGEHNGI---VVDVALQWTDAYQETIY 169

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFI 374
            + N I   +GGTH +G R ALTR +  Y E     R   I    DD+    + +LSV +
Sbjct: 170 CFTNNIPQKDGGTHLAGFRAALTRTLGNYIEQNGIARQAKITFSGDDMREGMIAVLSVKV 229

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP F+ QTK KLVS D +  VE       + +L +NP EA  +   +++ +  R   RK
Sbjct: 230 PEPSFSSQTKEKLVSSDVKPAVEATFGLRLEEFLQENPNEARAIAGKIVDAARAREAARK 289

Query: 435 QREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            R++ R+   +    LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR NQAVLPLR
Sbjct: 290 ARDLTRRKGVLDIAGLPGKLADCQEKDPAMSELFIVEGDSAGGSAKQGRNRKNQAVLPLR 349

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRY 535
           GKILNV  A  +++ ++ ++  L+ ALG    + +Y  + LRY
Sbjct: 350 GKILNVERARFDRMLSSAEVGTLITALGTGIGKDEYNPDKLRY 392


>gi|259018200|gb|ACV89692.1| DNA gyrase subunit B [Nocardia niigatensis]
          Length = 413

 Score =  203 bits (517), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 135/419 (32%), Positives = 205/419 (48%), Gaps = 33/419 (7%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
            +Y +SGGLHGVGISVVNALS  L   V      ++Q++    P      + +   K GT
Sbjct: 1   ESYAVSGGLHGVGISVVNALSTRLEAEVDYGGHHWTQEYKDAKPGKL--IQGEATKKTGT 58

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK----------- 254
            I F PDP IF     F    + +  Q  A+L+  +    +  +                
Sbjct: 59  TIRFFPDPDIFETTT-FSFETVARRLQEMAFLNKGLTITLTDQRIHEGDITDEVVSETAE 117

Query: 255 ------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
                           +   +++PGGL+ Y++     ++ I + I     +  G     V
Sbjct: 118 APKHLDENAPAAEPKVKTRTYHYPGGLEDYVRHINRTKTPIHNSIVGFTGKGTGH---EV 174

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIIS 359
           E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++  
Sbjct: 175 EVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKEGNLTG 234

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD+      I+SV I +P+F GQTKTKL + + +  V+    +   H+   NP +A  ++
Sbjct: 235 DDIREGLAAIVSVKIADPQFEGQTKTKLGNTEVKSFVQRTCNEHISHWFEANPADAKTIV 294

Query: 420 EWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
           +  +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGSA
Sbjct: 295 QKAVSSAQARVAARKARELVRRKSATDIGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSA 354

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           K  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K
Sbjct: 355 KSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDINKLRYHK 413


>gi|313574591|emb|CBX26148.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
          Length = 392

 Score =  203 bits (517), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 143/401 (35%), Positives = 214/401 (53%), Gaps = 14/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS  L + + R   +    F+ G+  +PL    +   + G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSVWLKLRIRRNGKVHEIGFTHGVADAPLSVIGEYEGRSG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF   P+ F     +D   L    +  A+L+  V+   +       K     +EE  
Sbjct: 61  TEVTFLASPETF-TMTDYDYGTLEHRLRELAFLNSGVRILLTDKSHSDVK-----QEELL 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GGL+ +++     +  +  +    K EK G    TVE A+ W +   E    + N I 
Sbjct: 115 YDGGLEAFVRYLDRAKKPLVDKPVAIKGEKDGI---TVEVALWWNDSYHENVLCFTNNIP 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  YAE +    K  +S+  +D       ILSV + +P+F+ 
Sbjct: 172 QRDGGTHMAGFRAALTRQVTSYAETSGILKKEKVSLQGEDCREGLTAILSVKVPDPKFSS 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNR 440
           QTK KLVS + +  VE+ + +    +L ++P +A  L+ + V         R+ +    R
Sbjct: 232 QTKDKLVSSEVRPVVESLVNEALSTWLEEHPSDARILVGKVVEAAVAREAARKARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADCS+     +ELF+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 292 KGALDIASLPGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVII 540
            A  +K+ ++Q+I  L+ ALG          + LRY K+II
Sbjct: 352 RARFDKMLSSQEIGTLITALGTSIGKDEFNADKLRYHKIII 392


>gi|313574621|emb|CBX26163.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
          Length = 392

 Score =  203 bits (517), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 141/401 (35%), Positives = 214/401 (53%), Gaps = 14/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS  L + + R   +    F+ G+  + L    +   + G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAALSVIGEYEGRSG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF   P+ F     +D   L    +  A+L+  V+   +  +    K     +EE  
Sbjct: 61  TEVTFLASPQTFT-MTDYDYGTLEHRLRELAFLNSGVRILLTDKRHSDIK-----QEELL 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GGL+ +++     +  +  +    + EK G    TVE A+ W +   E    + N I 
Sbjct: 115 YDGGLEAFVRYLDRAKKPLVDKPVAIRGEKDGI---TVEVALWWNDSYHENVLCFTNNIP 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  YAE +    K  +S+  +D       ILSV + +P+F+ 
Sbjct: 172 QRDGGTHMAGFRAALTRQVTSYAETSGILKKEKVSLQGEDCREGLTAILSVKVPDPKFSS 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNR 440
           QTK KLVS + +  VE+ + +    +L ++P +A  L+ + V         R+ +    R
Sbjct: 232 QTKDKLVSSEVRPVVESLVNEALSTWLEEHPSDARILVGKVVEAAVAREAARKARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADCS+     +ELF+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 292 KGALDIASLPGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVII 540
            A  +K+ ++Q+I  L+ ALG          + LRY K+II
Sbjct: 352 RARFDKMLSSQEIGTLITALGTSIGKDEFNADKLRYHKIII 392


>gi|313574603|emb|CBX26154.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574609|emb|CBX26157.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574611|emb|CBX26158.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574613|emb|CBX26159.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574615|emb|CBX26160.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574617|emb|CBX26161.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574619|emb|CBX26162.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
          Length = 392

 Score =  203 bits (517), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 142/401 (35%), Positives = 215/401 (53%), Gaps = 14/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS  L + + R   +    F+ G+  +PL    +   + G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGRSG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF   P+ F     +D   L    +  A+L+  V+   +  +    K     +EE  
Sbjct: 61  TEVTFLASPQTFT-MTDYDYGTLEHRLRELAFLNSGVRILLTDKRHSDIK-----QEELL 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GGL+ +++    ++  + +       EK G    TVE A+ W +   E    + N I 
Sbjct: 115 YDGGLEAFVRYLDRSKKPLVNTPVAIHGEKDGI---TVEVALWWNDSYHENVLCFTNNIP 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  YAE +    K  +S+  +D       ILSV + +P+F+ 
Sbjct: 172 QRDGGTHMAGFRAALTRQVTSYAETSGILKKEKVSLQGEDCREGLTAILSVKVPDPKFSS 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNR 440
           QTK KLVS + +  VE+ + +    +L ++P +A  L+ + V         R+ +    R
Sbjct: 232 QTKDKLVSSEVRPVVESLVNEALSTWLEEHPSDARILVGKVVEAAVAREAARKARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADCS+     +ELF+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 292 KGALDIASLPGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVII 540
            A  +K+ ++Q+I  L+ ALG          + LRY K+II
Sbjct: 352 RARFDKMLSSQEIGTLITALGTSIGKDEFNADKLRYHKIII 392


>gi|29652819|gb|AAO87379.1| DNA gyrase B [Listeria monocytogenes]
          Length = 170

 Score =  203 bits (517), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 81/172 (47%), Positives = 109/172 (63%), Gaps = 2/172 (1%)

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I  
Sbjct: 1   PGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILA 60

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ M  L++ 
Sbjct: 61  NEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDA 120

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
            ++++  PPL++I  G +  Y + +   +  L      G  K  I R+KGLG
Sbjct: 121 GYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYKGLG 170


>gi|288562960|pdb|3G75|A Chain A, Crystal Structure Of Staphylococcus Aureus Gyrase B Co-
           Complexed With Inhibitor
 gi|288562961|pdb|3G75|B Chain B, Crystal Structure Of Staphylococcus Aureus Gyrase B Co-
           Complexed With Inhibitor
 gi|288562962|pdb|3G7B|A Chain A, Staphylococcus Aureus Gyrase B Co-Complex With Inhibitor
 gi|288562963|pdb|3G7B|B Chain B, Staphylococcus Aureus Gyrase B Co-Complex With Inhibitor
          Length = 184

 Score =  203 bits (517), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 73/200 (36%), Positives = 110/200 (55%), Gaps = 25/200 (12%)

Query: 54  GLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNG 113
           GLE VR RPGMYIG T E+ LHHL  E++DN++DE +AGYAN IEV ++ + ++ V DNG
Sbjct: 1   GLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVVIEKDNWIKVTDNG 60

Query: 114 RGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTV 173
           RGIPV+   K   +  +E+ILT                        SVVNALS +L V V
Sbjct: 61  RGIPVDIQEKM-GRPAVEVILT-----------------------SSVVNALSQDLEVYV 96

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
            R  TI+ Q + +G+P   L++     +K GT I F+ D +IF +   ++   L +  + 
Sbjct: 97  HRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRE 155

Query: 234 KAYLSGRVKTCWSCDKEIAE 253
            A+L+  ++     +++   
Sbjct: 156 LAFLNKGIQITLRDERDEEN 175


>gi|259018178|gb|ACV89681.1| DNA gyrase subunit B [Nocardia caishijiensis]
          Length = 414

 Score =  203 bits (517), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 133/420 (31%), Positives = 211/420 (50%), Gaps = 33/420 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS +L   +      ++Q +    P      + +  ++ G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSKLEAEIDNDGYHWTQVYKDSKPGKL--VQGEPTSRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T I F  DP+IF     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTIRFWADPEIFETTT-YNFETVARRLQEMAFLNKGLTITLTDERVTESEVTDEVVSETA 117

Query: 250 ---EIAEKYGIP-----EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
              + AE    P     +   +++PGGL  +++     +S I + +     +  G     
Sbjct: 118 EAPKHAEDADAPVEHKVKTRTYHYPGGLVDFVRHINRTKSAIHNSVVGFTGKGTGH---E 174

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SII 358
           +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++ 
Sbjct: 175 LEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKEKKLLKEKDGNLT 234

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  +
Sbjct: 235 GDDIREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRACNEHLTHWFEANPADAKTI 294

Query: 419 LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           ++  +  ++ R+  RK RE V RK+A     LPGKLADC        E++IVEGDSAGGS
Sbjct: 295 VQKAVSSAQARMAARKARELVRRKSATDLGGLPGKLADCRSKDPGKCEIYIVEGDSAGGS 354

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K
Sbjct: 355 AKSGRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYHK 414


>gi|317420218|emb|CBW30266.1| gyrase subunit B [Psychrobacter immobilis]
          Length = 383

 Score =  203 bits (517), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 138/395 (34%), Positives = 215/395 (54%), Gaps = 17/395 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS +L + + R+   + Q ++ G+P + +++ E   +K GT+I F
Sbjct: 1   VSGGLHGVGVSVVNALSKKLEMNIWREGYHYHQTYTDGVPDADIQQMEPT-DKTGTQIRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P   +F     F+   L K  +  ++L+  V+   + ++       I ++ EF   GGL
Sbjct: 60  YPSSDVFTGTI-FEYDILAKRLRELSFLNSGVRIVLTDER-------IDKRHEFEHKGGL 111

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
             ++      +  I+        +  G    +VE A+ W +    ++  + N I   +GG
Sbjct: 112 SEFVSYINAGKDGINEVFHFVSEQDDGI---SVEVALQWTDTYNEKVFCFTNNIPQRDGG 168

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH SG R ALTR +  Y +      K  +    DD       I+SV + +P+F+ QTK K
Sbjct: 169 THLSGFRSALTRCLNTYMDRENLFKKEKVVATGDDAREGLTAIVSVKVPDPKFSSQTKDK 228

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIR 445
           LVS + +  VE+A+ D F+ YL +NP     +   +I+ +  R   RK      RKT + 
Sbjct: 229 LVSSEVKSAVESAMHDKFNDYLQENPSAGKAIAGKIIDAARARDAARKAREMTRRKTTLD 288

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC +     +EL+IVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +
Sbjct: 289 IAGLPGKLADCQEKDPAFSELYIVEGDSAGGSAKQGRSRKTQAILPLKGKILNVERARFD 348

Query: 506 KIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
           K+ ++ ++ +L+ ALGC     +Y  + +RY K+I
Sbjct: 349 KMLSSAEVGNLITALGCGIGPDEYNPDKVRYHKII 383


>gi|313611863|gb|EFR86323.1| DNA gyrase subunit B [Listeria monocytogenes FSL F2-208]
          Length = 130

 Score =  203 bits (517), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 62/125 (49%), Positives = 86/125 (68%), Gaps = 1/125 (0%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              Q  + +Y+   I++LEGLE VR RPGMYIG T ++ LHHL  E++DNA+DE +AG+ 
Sbjct: 7   TNVQENASDYNEDQIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVWEIVDNAIDEALAGFC 66

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154
             IE++++ +  +TV DNGRGIP   + K   + T+E+I T LHAGGKF    Y++SGGL
Sbjct: 67  TEIEITIEADNSITVRDNGRGIPTGINEKI-GRPTVEVIFTVLHAGGKFGGGGYKVSGGL 125

Query: 155 HGVGI 159
           HGVG 
Sbjct: 126 HGVGA 130


>gi|167598759|gb|ABZ88404.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598761|gb|ABZ88405.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598763|gb|ABZ88406.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598765|gb|ABZ88407.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598767|gb|ABZ88408.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598769|gb|ABZ88409.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598771|gb|ABZ88410.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598773|gb|ABZ88411.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598775|gb|ABZ88412.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598777|gb|ABZ88413.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598779|gb|ABZ88414.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598781|gb|ABZ88415.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598783|gb|ABZ88416.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598785|gb|ABZ88417.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598787|gb|ABZ88418.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598789|gb|ABZ88419.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598791|gb|ABZ88420.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598793|gb|ABZ88421.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598795|gb|ABZ88422.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598797|gb|ABZ88423.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598799|gb|ABZ88424.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598801|gb|ABZ88425.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598803|gb|ABZ88426.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598805|gb|ABZ88427.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598807|gb|ABZ88428.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598809|gb|ABZ88429.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598811|gb|ABZ88430.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598813|gb|ABZ88431.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598815|gb|ABZ88432.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598817|gb|ABZ88433.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598819|gb|ABZ88434.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598821|gb|ABZ88435.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598823|gb|ABZ88436.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598825|gb|ABZ88437.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598827|gb|ABZ88438.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598829|gb|ABZ88439.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598831|gb|ABZ88440.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598833|gb|ABZ88441.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598835|gb|ABZ88442.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598837|gb|ABZ88443.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598839|gb|ABZ88444.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598841|gb|ABZ88445.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598843|gb|ABZ88446.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598845|gb|ABZ88447.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598847|gb|ABZ88448.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598849|gb|ABZ88449.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598851|gb|ABZ88450.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598853|gb|ABZ88451.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598855|gb|ABZ88452.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
 gi|167598857|gb|ABZ88453.1| DNA gyrase B subunit [Flavobacterium psychrophilum]
          Length = 383

 Score =  203 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 145/387 (37%), Positives = 208/387 (53%), Gaps = 10/387 (2%)

Query: 153 GLHGVGISVVNALSDELHVTVAR-QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GLHGVG+SVVNALS+ L  TV      I+ Q++ +G  L P+++  +    RGT +TF P
Sbjct: 1   GLHGVGVSVVNALSNHLRATVHSSDGKIYEQEYEKGKALYPVKQIGETTK-RGTIVTFYP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           DP IF     +    L    +  ++L+  +   ++  +E  +K G    E F+   GLK 
Sbjct: 60  DPSIFTQTIEYSYDTLSARMRELSFLNKGITITFTDKRE-KDKDGNFVSEIFHSTEGLKE 118

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           Y++    NR      I    +         VE A+ +       I SY N I T EGGTH
Sbjct: 119 YIRYLDGNRE---PIIAHVISMDNDKGEIPVEVALIYNTSYTENIFSYVNNINTHEGGTH 175

Query: 331 ESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R  LTR +KKYA+ +    K    I  DD       I+SV + EP+F GQTKTKL 
Sbjct: 176 LQGFRTGLTRSLKKYADSSGMLDKLKFEISGDDFREGLTAIISVKVAEPQFEGQTKTKLG 235

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKL 447
           + +    V  A+ D  ++YL +NP +A  +++ VI  ++ R   +K RE+  RKT +   
Sbjct: 236 NREVVSPVSQAVGDMIENYLEENPNDARIIVQKVILAAQARHAAKKAREMVQRKTVMGGG 295

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV  A   K+
Sbjct: 296 GLPGKLSDCSEQDPAKCEVFLVEGDSAGGTAKQGRDRAFQAILPLRGKILNVEKAMHHKV 355

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLR 534
             N++I ++  ALG    +    + L 
Sbjct: 356 FENEEIRNIFTALGVTIGTAEDSKALN 382


>gi|211927049|dbj|BAG82777.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 445

 Score =  203 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 139/451 (30%), Positives = 215/451 (47%), Gaps = 61/451 (13%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  + V + R   ++ Q F+  +P   ++         G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRVEVQIKRDGRLWQQNFNMAVPEELVDA--GPAEGTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI------- 257
           TR+ F  D  IF     +D   + +  Q  A+L+  +    +  +  AE+          
Sbjct: 59  TRVRFWADGSIFEST-EYDFDVVARRLQEMAFLNKGLTITLTDRRSRAEQAAELDAIADS 117

Query: 258 --------------------------------------------PEKEEFYFPGGLKTYL 273
                                                         K  F++P GLK Y+
Sbjct: 118 EGRGSDSAPGSDEGSDIEHAVDAEQAFVEGAVETTEPAEPVKVRERKRTFHYPDGLKDYV 177

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
               ++++ I   I   + +  G     VE A+ W       + ++ NTI T EGGTHE 
Sbjct: 178 TAINKSKTAIHQTILYFEGKGTGH---EVEVAMQWNSGYSESVHTFANTINTHEGGTHEE 234

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALT  + KYA   +   ++  ++  DD+      ++S  I +P+F GQTKTKL + 
Sbjct: 235 GFRAALTSLVNKYARDKKLLKEKDPNLTGDDIREGLAAVISAKISDPQFEGQTKTKLGNT 294

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRL 449
           + +  ++  + +   H+   NP EA  ++   I  S+ R+  RK RE+  RK+A     L
Sbjct: 295 EVKGFIQRQVSEHVGHWFEANPAEARVIVNKGIASSQARVAARKAREMVRRKSATDIGGL 354

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC       +EL+IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  +  +K+  
Sbjct: 355 PGKLADCRSKDPAKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKSRIDKVLK 414

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           N ++  ++ ALG     ++  E LRY K+++
Sbjct: 415 NTEVQAIITALGTGIHEEFDLEKLRYHKIVL 445


>gi|225547698|gb|ACN93662.1| DNA gyrase subunit B [Nocardia kruczakiae]
          Length = 414

 Score =  203 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 130/420 (30%), Positives = 214/420 (50%), Gaps = 33/420 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS  +   + R    +SQ++    P   ++   +  ++ G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSRMVTEIDRDGFHWSQEYKDAKPGKLVK--GEPTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC---------DKEIAEKY 255
           T   F  DP +F     ++   + +  Q  A+L+  +    +          D+ ++E  
Sbjct: 59  TTQRFWADPDVFETTT-YNFETISRRLQEMAFLNKGLTITLTDQRVSEAEVTDEVVSETA 117

Query: 256 GIPEKE--------------EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
             P+ +               +++PGGL+ +++     +  I + + +  ++  G     
Sbjct: 118 EAPKHDEGSAAPPEPKVKTRTYHYPGGLEDFVKHINRTKQAIHNTVVSFTSKGTGH---E 174

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SII 358
           +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++ 
Sbjct: 175 LEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLT 234

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+      I+SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  +
Sbjct: 235 GDDIREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTI 294

Query: 419 LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           ++  +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGS
Sbjct: 295 VQKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGS 354

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K
Sbjct: 355 AKSGRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDISKLRYHK 414


>gi|51571547|emb|CAH18940.1| gyrase B [Corallococcus coralloides]
          Length = 370

 Score =  203 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 132/381 (34%), Positives = 203/381 (53%), Gaps = 16/381 (4%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y++SGGLHGVG++ VN LS+   V V R   +F Q ++RG+     ++     +KRGT
Sbjct: 1   GAYKVSGGLHGVGVTCVNFLSEWFKVRVQRAGKVFEQSYARGVSNGSPQEVG-TTDKRGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            I F+PDP +      F+   L +  +  A+L+  +      ++   E         F F
Sbjct: 60  TIHFKPDPTVMETV-DFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD-------FKF 111

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG+ ++++   + +  +  +    K+E++G    ++E A+ W +     I ++ N I T
Sbjct: 112 DGGISSFVEYLNKAKEALHDKPVYIKSEREGV---SLEIAMQWNDGYDERIFTFANNINT 168

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQ 382
            EGG+H SG + ALTR +  YAE     + +      +D       ++SV +  P+F GQ
Sbjct: 169 HEGGSHLSGFKAALTRTLNSYAEKGGLWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQ 228

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRK 441
           TKTKL + + +  VE  + D    +L +NP  A K++  +          R+ +  V RK
Sbjct: 229 TKTKLGNSEVKGLVEQMVNDQLASFLEENPPLAKKVVVKIGDACRARIAARKARETVRRK 288

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC     H +EL+IVEGDSAGGSAKQ R+R NQA+LPLRGKILNV  
Sbjct: 289 GVLDGGGLPGKLADCQSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEK 348

Query: 502 AGSEKIRNNQQIMDLVQALGC 522
           A  EK+  + +I+ L+ ALG 
Sbjct: 349 ARFEKMLTSAEIVTLITALGT 369


>gi|19912061|dbj|BAB88342.1| DNA gyrase subunit B [Cytophaga sp. I-602]
 gi|19912065|dbj|BAB88344.1| DNA gyrase subunit B [Cytophaga sp. I-105]
 gi|19912067|dbj|BAB88345.1| DNA gyrase subunit B [Cytophaga sp. I-689]
          Length = 391

 Score =  203 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 142/395 (35%), Positives = 208/395 (52%), Gaps = 9/395 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+S VNALS+ L  TV R+  I+ Q++SRG    P++   +     GT +TF
Sbjct: 1   VSGGLHGVGVSCVNALSNHLKATVYREGKIWEQEYSRGKAQYPVKSIGET-ELSGTVVTF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD  IF     +    L    +  AYL+  +    +  +   EK      E F+   GL
Sbjct: 60  IPDDTIFTQTTEYSYETLSNRMRELAYLNKGITIVITDKRNKDEKG-EFISETFHSQEGL 118

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGG 328
           K +++     R  + + + + + EK G     VE A+ +     E    Y N I T EGG
Sbjct: 119 KEFIKFLDATREPLINTVISMEGEKNGIP---VEVAMIYNTGFSENLHSYVNNINTHEGG 175

Query: 329 THESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH SG R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F GQTKTK
Sbjct: 176 THLSGFRRGLTSTLKKYADSSGLLDKLKFEISGDDFREGLTAIVSVKVSEPQFEGQTKTK 235

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IR 445
           L + +    V  A+ +    YL ++P +A +++E V   ++ R    K RE+ ++   + 
Sbjct: 236 LGNREVTSAVSQAVSEMLTDYLEEHPDDAKQIVEKVKLAAQARHAAAKAREMVQRKNPMG 295

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKL+DCS       E+F+VEGDSAGG+AK  R+R+ QA+LPLRGKILNV  A   
Sbjct: 296 GGGLPGKLSDCSDQDPENCEIFLVEGDSAGGTAKMGRDRNFQAILPLRGKILNVEKAMQH 355

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           K+  N++I ++  ALG    ++   + L  EK+  
Sbjct: 356 KVFENEEIKNIYTALGVTIGTEEDSKALNLEKLRY 390


>gi|9971297|dbj|BAB12466.1| DNA gyrase B subunit [Oceanobacter kriegii]
          Length = 385

 Score =  203 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 138/396 (34%), Positives = 214/396 (54%), Gaps = 16/396 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS++L +T+ R   ++ Q+++ G+P  PL++   V    G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLKLTIRRGGKLYEQEYTHGVPDYPLKEVG-VSETSG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF P  + F     F    L K  +  ++L+  V+     ++   ++        F 
Sbjct: 60  TAVTFLPSKETFTKT-EFSYDYLAKRLRELSFLNSGVRIHLKDERVADKENL------FE 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           F GGL ++++   E ++ ++         + G    +VE A+ W +     I  Y N I 
Sbjct: 113 FEGGLASFVKYLNEGKTALNEVFHFNAEREDGI---SVEVAMQWNDTFQESIHCYTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  Y        K  +S   +D       I+SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRAALTRSLNTYITQEGLDKKNKVSTTGNDAREGLTAIISVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  +   F  YL++NP  A  L+  +I+ +  R   RK R    R
Sbjct: 230 QTKDKLVSSEVKPAVEQEMGRLFQEYLLENPQTAKDLVGKMIDAARAREAARKAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +E+++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV 
Sbjct: 290 KGALEIAGLPGKLADCQEKDPALSEVYLVEGDSAGGSAKQGRDRCTQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRY 535
            A  +K+ +  ++  L+ ALGC    +      LRY
Sbjct: 350 KARFDKMLSFAEVGTLITALGCGIGCEEFNPDKLRY 385


>gi|259018122|gb|ACV89653.1| DNA gyrase subunit B [Nocardia pseudovaccinii]
          Length = 416

 Score =  203 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 129/422 (30%), Positives = 205/422 (48%), Gaps = 35/422 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L   V      ++Q++    P   ++       + G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLEADVDVDGYHWTQEYKDSKPGKLMQ--GDPTKRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK---------- 254
           T I F  DP IF     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTIRFWADPNIFETTT-YNFETVARRLQEMAFLNKGLTITLTDERVAETDVIDEVVSDTA 117

Query: 255 ---------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
                              +   +++PGGL+ +++     +  I + +     +  G   
Sbjct: 118 EAPKHADPDAPAAPVEHKVKTRTYHYPGGLEDFVRHINRTKQAIHNSVVAFTGKGTGH-- 175

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--S 356
             +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    +
Sbjct: 176 -ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGN 234

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           +  DD+      I+SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A 
Sbjct: 235 LTGDDIREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRTCNEHLSHWFEANPADAK 294

Query: 417 KLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAG
Sbjct: 295 TIVNKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAG 354

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           GSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY
Sbjct: 355 GSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRY 414

Query: 536 EK 537
            K
Sbjct: 415 HK 416


>gi|208609661|dbj|BAG72206.1| gyrase B [Methylobacterium sp. RB978]
          Length = 395

 Score =  203 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 136/404 (33%), Positives = 209/404 (51%), Gaps = 17/404 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS  L + + R     + +F  G  ++PL       ++RG
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSTWLRLRIWRAGKEHTMEFRHGDAVAPLAVVGPAGDRRG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF P P  F     FD A L K  +  A+L+  V+   +  +    K          
Sbjct: 61  TEVTFLPSPDTF-TMIEFDYATLEKRLRELAFLNSGVRIVLTDARHAEHKRDE-----LV 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG++ +++     +          + E+ G     VE A+ W +   E    + N I 
Sbjct: 115 YEGGVEAFVRYLDRAKQAQIEAPIVLRQERDGI---GVEVALWWNDTFHENVLCFTNNIP 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR I  YAE +    K  +++  +D       ++SV + +P+F+ 
Sbjct: 172 QRDGGTHLAGFRAALTRQITGYAEASGVTKKEKVALTGEDCREGLTAVVSVKVPDPKFSS 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL-LEWVIERSEERLRRRKQREVNR 440
           QTK KLVS + +  VE  +      +L ++P EA  +  +  +  +     R+ +    R
Sbjct: 232 QTKDKLVSSEVRPAVEGVMNATLGTWLEEHPNEARIIAAKVALAAAAREAARKARDLTTR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +      E+ +VEGDSAGGSAKQ R+R+ QAVLPLRGKILNV 
Sbjct: 292 KGALDIASLPGKLADCQERDPSKCEILLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT----RSQYREEDLRYEKVII 540
            A  +K+ ++Q+I  L+ ALG          +  + LRY ++II
Sbjct: 352 RARLDKMLSSQEIGTLITALGTGIGRDGAHAFNPDKLRYHRIII 395


>gi|321401436|gb|ADW83180.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
          Length = 364

 Score =  203 bits (516), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 143/368 (38%), Positives = 204/368 (55%), Gaps = 10/368 (2%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA-RQNTIFSQKFSRGIPLSPLEKKE 197
           AGGKFD  +Y++SGGLHGVG+SVVNALS+ L  TV      I+ Q++ +G  L P+++  
Sbjct: 2   AGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGKIYEQEYEKGKALYPVKQIG 61

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +    RGT +TF PDP IF     +    L    +  ++L+  +   ++  +E  +K G 
Sbjct: 62  ETTK-RGTIVTFYPDPSIFTQTIEYSYDTLSARMRELSFLNKGITITFTDKRE-KDKDGN 119

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
              E F+   GLK Y++    NR      I    +         VE A+ +       I 
Sbjct: 120 FVSEIFHSTEGLKEYIRYLDGNRE---PIIAHVISMDNDKGEIPVEVALIYNTSYTENIF 176

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFI 374
           SY N I T EGGTH  G R  LTR +KKYA+ +    K    I  DD       I+SV +
Sbjct: 177 SYVNNINTHEGGTHLQGFRTGLTRSLKKYADSSGMLDKLKFEISGDDFREGLTAIISVKV 236

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP+F GQTKTKL + +    V  A+ D  ++YL +NP +A  +++ VI  ++ R   +K
Sbjct: 237 AEPQFEGQTKTKLGNREVVSPVSQAVGDMIENYLEENPNDARIIVQKVILAAQARHAAKK 296

Query: 435 QREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            RE+ ++  +     LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLR
Sbjct: 297 AREMVQRKTVWGGGGLPGKLSDCSEQDPAKCEVFLVEGDSAGGTAKQGRDRAFQAILPLR 356

Query: 494 GKILNVAS 501
           GKILNV  
Sbjct: 357 GKILNVEK 364


>gi|38224481|gb|AAR14141.1| DNA gyrase B subunit [Fusobacterium varium]
          Length = 401

 Score =  203 bits (516), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 143/411 (34%), Positives = 204/411 (49%), Gaps = 16/411 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           +N  Y++SGGLHGVG+SVVNALS    VTV     I+ QK++RG+P   +++        
Sbjct: 1   ENDNYKVSGGLHGVGVSVVNALSLWTDVTVKTDGKIWYQKYNRGVPEEDVKEIGVTTEH- 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F+ D +IF     +D   L    +  AYL+  ++   S  ++   K      EEF
Sbjct: 60  GTTVRFKADHEIFETLI-YDYNTLKNRLKELAYLNKGLEIHLSDSRKEPYKK-----EEF 113

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTI 322
            F GG+  +L+   E    +  E      E        V+ A  +   ++  I S+ N I
Sbjct: 114 KFEGGIVDFLKEITEETEKLIPEPIYMTGEVDNV---AVDIAFLYTVNQSEIIYSFVNNI 170

Query: 323 LTDEGGTHESGL-RVALTRGIK---KYAELTQNKRAISIISDDLMISAVGILSVFIREPE 378
            T EG        R ALTR I    K   +++ KR  +             + V + +P+
Sbjct: 171 NTHEGRYPCKWDLRTALTRVINDGRKSFTVSERKRWKTSKEMIKEKEFQQFVQVKVPQPQ 230

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
           F GQTKTKL + +    V   +       L  NP +        +   + R   +K RE+
Sbjct: 231 FEGQTKTKLGNSEVTGIVSTLVGTNLKIVLEDNPNDPKNNNRENMNSKKAREAAQKAREL 290

Query: 439 NRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
             + + +    LPGKLADCS       E++IVEGDSAGGSAKQ R+RS+QA+LPLRGKIL
Sbjct: 291 VLRKSVLEVGSLPGKLADCSSKNPDECEIYIVEGDSAGGSAKQGRDRSHQAILPLRGKIL 350

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           NV  AG  K   N ++  ++ A G      +  E LRY K+I+MTDADVDG
Sbjct: 351 NVEKAGLHKSLENNEVRAMITAFGTSIGDSFNIEKLRYGKIILMTDADVDG 401


>gi|19912057|dbj|BAB88340.1| DNA gyrase subunit B [Cytophaga sp. T-588]
          Length = 391

 Score =  203 bits (516), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 139/395 (35%), Positives = 202/395 (51%), Gaps = 9/395 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+S VNALS  L     R+  I+ Q++ RG    P++   + +   GT +TF
Sbjct: 1   VSGGLHGVGVSCVNALSKHLKAQSTREGKIWEQEYERGKTQYPVKSVGESKE-TGTVVTF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD  IF     +    L    +  AYL+  +    +  +   EK      E F+   GL
Sbjct: 60  TPDDTIFTQTTEYSYETLANRMRELAYLNKGITISLTDRRNKDEKG-EFINETFHSEEGL 118

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGG 328
           K +++   E R  +   +   + EK G     VE A+ +     E    Y N I T EGG
Sbjct: 119 KEFIRFLDETRDPLIQTVIAMEGEKNGIP---VEVAMIYNTGYSENLHSYVNNINTHEGG 175

Query: 329 THESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH SG R  LT  +KK    +    K    I  DD       I+SV + EP+F GQTKTK
Sbjct: 176 THLSGFRRGLTSTLKKVCGHSGMLDKLKFEISGDDFREGLTAIVSVKVSEPQFEGQTKTK 235

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IR 445
           L + +    V  A+ +    YL ++P +A +++E V   ++ R    K RE+ ++   + 
Sbjct: 236 LGNREVTSAVSQAVSEMLTDYLEEHPDDAKQIVEKVKLAAQARHAAAKAREMVQRKNPMS 295

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R  QA+LPLRGKILNV  A   
Sbjct: 296 VGGLPGKLSDCSEQDPTKCEVFLVEGDSAGGTAKQGRDRMFQAILPLRGKILNVEKAMQH 355

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           K+  N++I ++  ALG    ++   + L  EK+  
Sbjct: 356 KVFENEEIKNIYTALGVTIGTEEDSKALNLEKLRY 390


>gi|45736529|dbj|BAD13343.1| DNA gyrase subunit B [Leptospira borgpetersenii]
 gi|45736531|dbj|BAD13344.1| DNA gyrase subunit B [Leptospira borgpetersenii]
 gi|45736533|dbj|BAD13345.1| DNA gyrase subunit B [Leptospira borgpetersenii]
 gi|45736535|dbj|BAD13346.1| DNA gyrase subunit B [Leptospira borgpetersenii]
 gi|45736537|dbj|BAD13347.1| DNA gyrase subunit B [Leptospira borgpetersenii]
 gi|45736539|dbj|BAD13348.1| DNA gyrase subunit B [Leptospira borgpetersenii]
 gi|45736541|dbj|BAD13349.1| DNA gyrase subunit B [Leptospira borgpetersenii]
 gi|45736543|dbj|BAD13350.1| DNA gyrase subunit B [Leptospira borgpetersenii]
 gi|45736545|dbj|BAD13351.1| DNA gyrase subunit B [Leptospira borgpetersenii]
 gi|45736547|dbj|BAD13352.1| DNA gyrase subunit B [Leptospira borgpetersenii]
 gi|45736549|dbj|BAD13353.1| DNA gyrase subunit B [Leptospira borgpetersenii]
 gi|45736551|dbj|BAD13354.1| DNA gyrase subunit B [Leptospira borgpetersenii]
 gi|45736553|dbj|BAD13355.1| DNA gyrase subunit B [Leptospira borgpetersenii]
 gi|45736555|dbj|BAD13356.1| DNA gyrase subunit B [Leptospira borgpetersenii]
 gi|133778464|dbj|BAF49238.1| DNA gyrase B subunit [Leptospira borgpetersenii serovar
           Castellonis]
 gi|283132393|dbj|BAI63602.1| DNA gyrase subunit B [Leptospira borgpetersenii]
          Length = 391

 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 138/397 (34%), Positives = 217/397 (54%), Gaps = 11/397 (2%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS+ L V V ++  I++QK+ +GIP+SP+E K      RGT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSEYLEVEVHQKGKIYTQKYEKGIPVSPVEIKGDSSE-RGTIV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PD  IF     F    L    +  A+L+  +       +  AE   +   E F F G
Sbjct: 60  RFKPDATIFTTV-DFQFDILSARFRELAFLNKGLVLIIEDRRRGAEGENLLRNE-FQFSG 117

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEG 327
           G+ ++++   EN+  +   I   + +       +++++  + E    I  + N I  + G
Sbjct: 118 GIVSFVEHINENKHPMHKVIHFERNKDDVLAEISIQYSETYTEN---IFCFTNNINNNLG 174

Query: 328 GTHESGLRVALTRGIKKYAELT---QNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GTH  G R ALTR +  + +       K    +  +D+      ++S+ I +P+F  QTK
Sbjct: 175 GTHLEGFRAALTRTLNDFLKKDTTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTK 234

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
            KLV+ + +  ++    +    +  +NP    K+LE  I  ++ R   RK R+   RKT 
Sbjct: 235 EKLVNAEIKGIMQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTV 294

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADCS+     +EL++VEGDSAGGSAKQ R+R+ QA+LPL+GKILNV  A 
Sbjct: 295 LEGGGLPGKLADCSEKDPAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKAR 354

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            +KI ++++I  LV ALG      ++    +RY K++
Sbjct: 355 LDKILSSEEIRVLVSALGTGIGEDEFNINKIRYHKIM 391


>gi|157073781|dbj|BAF79889.1| gyrase B [Methylobacterium aquaticum]
          Length = 395

 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 136/404 (33%), Positives = 208/404 (51%), Gaps = 17/404 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS  L + V R     +  F  G  +S L       ++RG
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSTWLRLRVWRGGQEHAMDFRHGDAVSALAVVGPAGDRRG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF P P+ F     FD A L K  +  A+L+  V+   +  +    +          
Sbjct: 61  TEVTFLPSPETF-TMIEFDYATLEKRLRELAFLNSGVRIVLTDARHAEHRRDE-----LV 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG++ +++     +          + E+ G     VE A+ W +   E    + N I 
Sbjct: 115 YEGGVEAFVRYLDRAKEPQIEAPIVLRQERDGI---GVEVALWWNDTFHENVLCFTNNIP 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR I  YAE +    K  +++  +D       ++SV + +P+F+ 
Sbjct: 172 QRDGGTHLAGFRAALTRQITGYAEASGVTKKEKVALTGEDCREGLTAVVSVKVPDPKFSS 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL-LEWVIERSEERLRRRKQREVNR 440
           QTK KLVS + +  VE  +      +L ++P EA  +  +  +  +     R+ +    R
Sbjct: 232 QTKDKLVSSEVRPAVEGVMNATLGTWLEEHPNEARIIAAKVALAAAAREAARKARDLTTR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +      E+ +VEGDSAGGSAKQ R+R+ QAVLPLRGKILNV 
Sbjct: 292 KGALDIASLPGKLADCQERDPSKCEILLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT----RSQYREEDLRYEKVII 540
            A  +K+ ++Q+I  L+ ALG          +  + LRY ++II
Sbjct: 352 RARLDKMLSSQEIGTLITALGTGIGRDGAHAFNPDKLRYHRIII 395


>gi|19912059|dbj|BAB88341.1| DNA gyrase subunit B [Cytophaga sp. I-601]
          Length = 391

 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 142/395 (35%), Positives = 208/395 (52%), Gaps = 9/395 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+S VNALS+ L  TV R+  I+ Q++SRG    P++   +     GT +TF
Sbjct: 1   VSGGLHGVGVSCVNALSNHLKATVYREGKIWEQEYSRGKAQYPVKSIGET-ELSGTVVTF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD  IF     +    L    +  AYL+  +    +  +   EK      E F+   GL
Sbjct: 60  IPDDTIFTQTTEYSYETLSNRMRELAYLNKGITIVITDKRNKDEKG-EFISETFHSQEGL 118

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGG 328
           K +++     R  + + + + + EK G     VE A+ +     E    Y N I T EGG
Sbjct: 119 KEFIKFLDATREPLINTVISMEGEKNGIP---VEVAMIYNTGFSENLHSYVNNINTHEGG 175

Query: 329 THESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH SG R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F GQTKTK
Sbjct: 176 THLSGFRRGLTSTLKKYADSSGLLDKLKFEISGDDFREGLTAIVSVKVSEPQFEGQTKTK 235

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IR 445
           L + +    V  A+ +    YL ++P +A +++E V   ++ R    K RE+ ++   + 
Sbjct: 236 LGTREVTSAVSQAVSEMLTDYLEEHPDDAKQIVEKVKLAAQARHAAAKAREMVQRKNPMG 295

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKL+DCS       E+F+VEGDSAGG+AK  R+R+ QA+LPLRGKILNV  A   
Sbjct: 296 GGGLPGKLSDCSDQDPENCEIFLVEGDSAGGTAKMGRDRNFQAILPLRGKILNVEKAMQH 355

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           K+  N++I ++  ALG    ++   + L  EK+  
Sbjct: 356 KVFENEEIKNIYTALGVTIGTEEDSKALNLEKLRY 390


>gi|305861834|gb|ADM72875.1| DNA gyrase B subunit [Shewanella baltica]
 gi|305861836|gb|ADM72876.1| DNA gyrase B subunit [Shewanella baltica]
 gi|305861838|gb|ADM72877.1| DNA gyrase B subunit [Shewanella baltica]
 gi|305861840|gb|ADM72878.1| DNA gyrase B subunit [Shewanella baltica]
 gi|305861842|gb|ADM72879.1| DNA gyrase B subunit [Shewanella baltica]
 gi|305861844|gb|ADM72880.1| DNA gyrase B subunit [Shewanella baltica]
 gi|305861846|gb|ADM72881.1| DNA gyrase B subunit [Shewanella baltica]
 gi|305861848|gb|ADM72882.1| DNA gyrase B subunit [Shewanella baltica]
 gi|305861850|gb|ADM72883.1| DNA gyrase B subunit [Shewanella baltica]
 gi|305861852|gb|ADM72884.1| DNA gyrase B subunit [Shewanella baltica]
 gi|305861854|gb|ADM72885.1| DNA gyrase B subunit [Shewanella baltica]
 gi|305861856|gb|ADM72886.1| DNA gyrase B subunit [Shewanella baltica]
 gi|305861858|gb|ADM72887.1| DNA gyrase B subunit [Shewanella baltica]
 gi|305861860|gb|ADM72888.1| DNA gyrase B subunit [Shewanella baltica]
 gi|305861864|gb|ADM72890.1| DNA gyrase B subunit [Shewanella baltica]
 gi|307947786|gb|ADN96133.1| DNA gyrase B subunit [Shewanella baltica]
 gi|307947788|gb|ADN96134.1| DNA gyrase B subunit [Shewanella baltica]
 gi|307947790|gb|ADN96135.1| DNA gyrase B subunit [Shewanella baltica OS195]
 gi|307947792|gb|ADN96136.1| DNA gyrase B subunit [Shewanella baltica]
 gi|307947794|gb|ADN96137.1| DNA gyrase B subunit [Shewanella baltica]
 gi|307947796|gb|ADN96138.1| DNA gyrase B subunit [Shewanella baltica]
 gi|307947798|gb|ADN96139.1| DNA gyrase B subunit [Shewanella baltica]
 gi|307947800|gb|ADN96140.1| DNA gyrase B subunit [Shewanella baltica]
 gi|307947802|gb|ADN96141.1| DNA gyrase B subunit [Shewanella baltica]
 gi|307947812|gb|ADN96145.1| DNA gyrase B subunit [Shewanella baltica]
 gi|307947814|gb|ADN96146.1| DNA gyrase B subunit [Shewanella baltica]
 gi|307947816|gb|ADN96147.1| DNA gyrase B subunit [Shewanella baltica]
          Length = 386

 Score =  203 bits (516), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 143/397 (36%), Positives = 218/397 (54%), Gaps = 16/397 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS +L +T+ R   ++ Q ++ G+P +P+++        GT I F 
Sbjct: 1   SGGLHGVGVSVVNALSKKLQMTIRRAGKVYEQFYTHGVPDAPIKEIGDATK-TGTEIRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P    F D   F    L K  +  ++L+  V      +++        + E F + GG+ 
Sbjct: 60  PSEDTFSDV-EFHFEILAKRVRELSFLNSGVGIRLVDERDN-------KNEFFKYEGGIS 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            ++     N++ ++ ++F    E++     TVE A+ W +     I  + N I   +GGT
Sbjct: 112 AFVDYLNRNKTPVNKDVFHFMQERED--GITVEVAMQWNDGYQENIFCFTNNIPQRDGGT 169

Query: 330 HESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R ALTR +  Y E      K   S   DD       ++SV + +P+F+ QTK KL
Sbjct: 170 HLVGFRSALTRNLNSYMENEGYNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKL 229

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRK 446
           VS + +  VE  + +  + YL++NP +A  ++  +++ +  R   RK R    RK A+  
Sbjct: 230 VSSEVKTAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDL 289

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 290 GGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 349

Query: 507 IRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
           + ++Q++  L+ ALGC   R +Y  +  RY  +IIMT
Sbjct: 350 MLSSQEVATLITALGCGIGRDEYNPDKTRYHNIIIMT 386


>gi|211927103|dbj|BAG82804.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 421

 Score =  203 bits (516), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 131/427 (30%), Positives = 210/427 (49%), Gaps = 37/427 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS ++ V +      +SQ +    P      + +  ++ G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTKVEVDINVDGYRWSQTYDHAKPGPL--VQGEPTSETG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------ 258
           T + F  DP+IF     ++   + +  Q  A+L+  +    + ++   ++          
Sbjct: 59  TTVRFWADPEIFETTT-YNFETVARRLQEMAFLNKGLTITLTDERVAEDEVTDDVVSPTA 117

Query: 259 ---------------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                                +   +++PGGL+ Y++     +  I + +     +  G 
Sbjct: 118 EAPKTASETEEEAAAPKAPKVKSRIYHYPGGLEDYVRFINRTKQPIHNSVVGFTAKGTGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRA 354
               +E A+ W       + ++ NTI T EGGTHE G R ALT  +KKY   +     + 
Sbjct: 178 ---ELEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTSVVKKYAKDKKLVKDKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             +  DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +
Sbjct: 235 PELTGDDIREGLAAIISVKVAEPQFEGQTKTKLGNTEVKSFVQKACNENIAHWFEANPAD 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   +  ++ R   RK RE V RK+A     LPGKLADC  N     E++IVEGDS
Sbjct: 295 AKTIVTKAVSSAQARTAARKARELVRRKSATDIGGLPGKLADCRSNDPSKCEIYIVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    L
Sbjct: 355 AGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDIAKL 414

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 415 RYHKIVL 421


>gi|317420222|emb|CBW30268.1| gyrase subunit B [Psychrobacter cibarius]
          Length = 383

 Score =  203 bits (516), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 138/395 (34%), Positives = 215/395 (54%), Gaps = 17/395 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS +L + + R+   + Q ++ G+P + +++ E   +K GT+I F
Sbjct: 1   VSGGLHGVGVSVVNALSKKLEMNIWREGYHYHQTYTDGVPDADIQQMEPT-DKTGTQIRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P   +F     F+   L K  +  ++L+  V+   + ++       I ++ EF   GGL
Sbjct: 60  YPSSDVFTGTI-FEYDILAKRLRELSFLNSGVRIVLTDER-------IDKRHEFEHKGGL 111

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
             ++      +  I+        +  G    +VE A+ W +    ++  + N I   +GG
Sbjct: 112 SEFVSYINAGKDGINEVFHFVSEQDDGI---SVEVALQWTDTYNEKVFCFTNNIPQRDGG 168

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH SG R ALTR +  Y +      K  +    DD       I+SV + +P+F+ QTK K
Sbjct: 169 THLSGFRSALTRCLNTYMDRENLFKKEKVVATGDDAREGLTAIVSVKVPDPKFSSQTKDK 228

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIR 445
           LVS + +  VE+A+ D F+ YL +NP     +   +I+ +  R   RK      RKT + 
Sbjct: 229 LVSSEVKSAVESAMHDKFNDYLQENPSAGKAIAGKIIDAARARDAARKAREMTRRKTTLD 288

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC +     +EL+IVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +
Sbjct: 289 IAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRSRKTQAILPLKGKILNVERARFD 348

Query: 506 KIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
           K+ ++ ++ +L+ ALGC     +Y  + +RY K+I
Sbjct: 349 KMLSSAEVGNLITALGCGIGPDEYNPDKVRYHKII 383


>gi|313574595|emb|CBX26150.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574597|emb|CBX26151.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
          Length = 392

 Score =  203 bits (516), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 138/401 (34%), Positives = 209/401 (52%), Gaps = 14/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS  L + + R   +    F+ G+  +PL    +   + G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGRSG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF   P+ F     +D   L    +  A+L+  V+   +  +    K          
Sbjct: 61  TEVTFLASPETFT-MTDYDYGTLEHRLRELAFLNSGVRILLTDKRHSDVKQQE-----LL 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GGL+ +++     +  +  +      EK G    TVE A+ W +   E    + N I 
Sbjct: 115 YDGGLEAFVRYLDRAKKPLVDKPVAIHGEKDGI---TVEVALWWNDSYHENVLCFTNNIP 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  YA+ +   +   +    +D       ILSV + +P+F+ 
Sbjct: 172 QRDGGTHMAGFRAALTRQVTSYADTSGIMKREKVSLQGEDCREGLTAILSVKVPDPKFSS 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNR 440
           QTK KLVS + +  VE+ + +    +L ++P EA  L+ + V         R+ +    R
Sbjct: 232 QTKDKLVSSEVRPVVESLVNEALSTWLEEHPSEAKILVGKVVEAAVAREAARKARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADCS+     +ELF+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 292 KGALDIASLPGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVII 540
            A  +K+ ++Q+I  L+ ALG          + LRY K+II
Sbjct: 352 RARFDKMLSSQEIGTLITALGTSIGKDEFNADKLRYHKIII 392


>gi|259018136|gb|ACV89660.1| DNA gyrase subunit B [Nocardia miyunensis]
          Length = 413

 Score =  203 bits (516), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 130/419 (31%), Positives = 206/419 (49%), Gaps = 32/419 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L   +      +SQ++    P      + +   + G
Sbjct: 1   SESYAVSGGLHGVGISVVNALSTRLQAEIDYDGHHWSQEYKDAKPGKL--IQGESTKRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK---------- 254
           T I F  DP IF     F+   + +  Q  A+L+  +    + ++    +          
Sbjct: 59  TTIRFWADPNIFETTL-FNFETVSRRLQEMAFLNKGLTITLTDERVTDSEVTEEVVSEHA 117

Query: 255 ------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
                           +   +++PGGL+ +++     +  I + +     +  G     +
Sbjct: 118 EAPKHAEEAPPVEHKVKTRTYHYPGGLEDFVKHINRTKQPIHNTVVAFTGKGTGH---EL 174

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIIS 359
           E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++  
Sbjct: 175 EVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTG 234

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD+      I+SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  ++
Sbjct: 235 DDIREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIV 294

Query: 420 EWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
              +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGSA
Sbjct: 295 NKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPTKSEIYIVEGDSAGGSA 354

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           K  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K
Sbjct: 355 KSGRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYHK 413


>gi|259018144|gb|ACV89664.1| DNA gyrase subunit B [Nocardia jiangxiensis]
          Length = 413

 Score =  203 bits (515), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 132/419 (31%), Positives = 207/419 (49%), Gaps = 32/419 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L   +      +SQ++    P      + +   + G
Sbjct: 1   SESYAVSGGLHGVGISVVNALSTRLQAEIDYDGHHWSQEYKDAKPGKL--IQGESTKRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T I F  DP IF     F+   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTIRFWADPNIFETTV-FNFETVSRRLQEMAFLNKGLTITLTDERVTESEVTEEVVSEHA 117

Query: 250 -------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
                  E A      +   +++PGGL+ +++     +  I + +     +  G     +
Sbjct: 118 EAPKHAEEAAPVEHKVKTRTYHYPGGLEDFVKHINRTKQPIHNTVVAFTGKGTGH---EL 174

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIIS 359
           E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++  
Sbjct: 175 EVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTG 234

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD+      I+SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  ++
Sbjct: 235 DDIREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIV 294

Query: 420 EWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
              +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGSA
Sbjct: 295 NKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPTKSEIYIVEGDSAGGSA 354

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           K  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K
Sbjct: 355 KSGRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYHK 413


>gi|261343286|gb|ACX70144.1| DNA gyrase subunit B [Nocardia coeliaca]
          Length = 415

 Score =  203 bits (515), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 130/421 (30%), Positives = 208/421 (49%), Gaps = 34/421 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L V +      + Q ++   P      +     + G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLDVDIKVDGYRWQQTYTDSKPGEL--VQGDPTKETG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T ++F  DP+IF     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTVSFWADPEIFETTR-YNFETVARRLQEMAFLNKGLTITLTDERAEVIDDEAAEVAEAP 117

Query: 250 ---------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                             +   +++PGGL+ Y++   ++++ I + +     +  G    
Sbjct: 118 KSAAEEAEEAAQAAPRKSKTRIYHYPGGLEDYVRHINKSKTPIHNSVVGFTAKGTGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISI 357
            +E A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +     +   +
Sbjct: 175 ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTATVNKYALEKKLLKDKDPKL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  
Sbjct: 235 TGDDIREGLAAIISVKVGEPQFEGQTKTKLGNTEVKSFVQKACNEHLAHWFEANPADAKT 294

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   +  ++ R+  RK RE V RK+A     LPGKLADC  N    +E++IVEGDSAGG
Sbjct: 295 IVNKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPEKSEIYIVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY 
Sbjct: 355 SAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDIAKLRYH 414

Query: 537 K 537
           K
Sbjct: 415 K 415


>gi|126035276|gb|ABN72391.1| gyrase B subunit [Pseudomonas aeruginosa]
          Length = 384

 Score =  203 bits (515), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 144/396 (36%), Positives = 217/396 (54%), Gaps = 18/396 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS EL +T+ R N ++ Q +  G+P  PL +  +  +  GT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSHELRLTIRRHNKVWEQVYHHGVPQFPLREVGET-DGSGTEV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+P P+ F +   F    L K  +  ++L+  V      ++         ++E F + G
Sbjct: 60  HFKPSPETFSNIH-FSWDILAKRIRELSFLNSGVGILLRDER-------TGKEELFKYEG 111

Query: 268 GLKTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GLK +++    N++ ++       + E+ G     VE A+ W +     +  + N I   
Sbjct: 112 GLKAFVEYLNTNKTAVNEVFHFNVQREEDGV---GVEVALQWNDSFNENLLCFTNNIPQR 168

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R ALTR +  Y E     +        DD       I+SV + +P+F+ QT
Sbjct: 169 DGGTHLAGFRSALTRNLNNYIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQT 228

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKT 442
           K KLVS + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK 
Sbjct: 229 KDKLVSSEVKTAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKG 288

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A
Sbjct: 289 ALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKA 348

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537
             +K+ ++Q++  L+ ALGC   R +Y  + LRY  
Sbjct: 349 RFDKMLSSQEVGTLITALGCGIGREEYNIDKLRYHN 384


>gi|324962652|gb|ADY62428.1| gyrase subunit B [Frankia sp. CmF6]
          Length = 360

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 106/335 (31%), Positives = 164/335 (48%), Gaps = 21/335 (6%)

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G + V DNGRGIPV  HP    +  +E++LTTLHAGGKFD  +Y +SGGLHGVG+
Sbjct: 1   TLLADGGVRVSDNGRGIPVGEHP-TEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHGVGV 59

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS  L V + R+   + Q +    P +PL K      K GT +TF  D  IF   
Sbjct: 60  SVVNALSTRLEVEIRREGFTWFQPYENTRPAAPLAK-GAPTRKTGTTVTFWADDTIFET- 117

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             +    L +  Q  A+L+  +      ++        P +  + + GGL  +++    +
Sbjct: 118 TDYKYETLSRRLQEMAFLNKGLTISLRDER-----PEEPLEVTYRYAGGLVDFVEHLNAS 172

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  I   + +  ++  G      E A+ W       + ++ NTI T EGGTHE G R AL
Sbjct: 173 KDPIHKTVISLDSKGTGI---EAELAMQWNARYNESVYTFANTINTHEGGTHEEGFRAAL 229

Query: 339 TRGIKKYAELTQNKRAISIISDD---------LMISAVGILSVFIREPEFAGQTKTKLVS 389
           T  +  YA+     +       +         +      I+SV + +P+F GQTKTKL +
Sbjct: 230 TSALNAYAKDQNLLKPPKANGKNADERLAGDDIREGLTAIISVKLAQPQFEGQTKTKLGN 289

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            +A+R V+         +L  N +EA  ++   ++
Sbjct: 290 SEAKRFVQEMCYSALKDWLEANRVEARAIVSKALD 324


>gi|308153158|dbj|BAJ22168.1| DNA gyrase subunit B [Mycobacterium vaccae]
          Length = 419

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 127/424 (29%), Positives = 208/424 (49%), Gaps = 35/424 (8%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y++SGGLHGVG+SVVNALS  L   V +    + Q + R +P +  + ++  +     
Sbjct: 2   GAYQVSGGLHGVGVSVVNALSSRLEADVRKDGYEWFQTYDRSVPGTLKQGEKTTKTGTTI 61

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------------- 249
           R    PD     +   +D   + +  Q  A+L+  +    + ++                
Sbjct: 62  RFWADPD---IFETTTYDFETIARRLQEMAFLNKGLTIELTDERVTPTDVVDDVVSDHAE 118

Query: 250 ---------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                      A      +   F++PGGL  +++     ++ I   +   + +  G    
Sbjct: 119 APKSAEEKAAEARAPQKVKHRVFHYPGGLVDFVKHINRTKTAIQPSVIDFEGKGPGH--- 175

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISI 357
            VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +    ++  ++
Sbjct: 176 EVEVAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLLKEKDPNL 235

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      ++SV + +P+F GQTKTKL + + +  V+    +  +H+   NP EA  
Sbjct: 236 TGDDIREGLAAVISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEQLNHWFESNPAEAKT 295

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGG
Sbjct: 296 VINKAVSSAQARMAARKARELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGG 355

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY 
Sbjct: 356 SAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDLSKLRYH 415

Query: 537 KVII 540
           K+++
Sbjct: 416 KIVL 419


>gi|133778458|dbj|BAF49235.1| DNA gyrase B subunit [Leptospira weilii serovar Sarmin]
          Length = 391

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 137/397 (34%), Positives = 218/397 (54%), Gaps = 11/397 (2%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS+ L V V ++  I++QK+ +GIP+SP+E K      RGT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSEYLEVEVHQKGKIYTQKYEKGIPVSPVEIKGDSSE-RGTIV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PD  IF     F    L    +  A+L+  +       +  +E   +   E F F G
Sbjct: 60  RFKPDATIFTTV-DFQFDILSARFRELAFLNKGLVLIVEDRRRGSEGENLLRNE-FQFSG 117

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEG 327
           G+ ++++   EN+  +   I   + +       +++++  + E    I  + N I  + G
Sbjct: 118 GIVSFVEHINENKHPMHKVIHFERNKDDVLAEISIQYSETYTEN---IFCFTNNINNNLG 174

Query: 328 GTHESGLRVALTRGIKKYAELT---QNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GTH  G R ALTR +  + +       K    +  +D+      ++S+ I +P+F  QTK
Sbjct: 175 GTHLEGFRAALTRTLNDFLKKDTTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTK 234

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
            KLV+ + +  ++    +    +  +NP    K+LE  I  ++ R   RK R+   RKT 
Sbjct: 235 EKLVNAEIKGIMQTLSSEGLTLFFEENPSITKKILEKCILSAKAREAARKARDLTRRKTV 294

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADCS+     +EL++VEGDSAGGSAKQ R+R+ QA+LPL+GKILNV  A 
Sbjct: 295 LEGGGLPGKLADCSEKDPAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKAR 354

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            +KI ++++I  LV ALG      ++  + +RY K++
Sbjct: 355 LDKILSSEEIRVLVSALGTGIGEDEFNIDKIRYHKIM 391


>gi|259018142|gb|ACV89663.1| DNA gyrase subunit B [Nocardia jejuensis]
          Length = 415

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 129/421 (30%), Positives = 211/421 (50%), Gaps = 34/421 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  + V +      +SQ +    P   ++   +  ++ G
Sbjct: 1   SESYAVSGGLHGVGISVVNALSSRVEVEIDVDGYHWSQTYKEATPSKLVK--GEPTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK---------- 254
           T + F  DP+IF     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTVRFWADPEIFETTT-YNFETVARRLQEMAFLNKGLTITLTDERVSESDVTDEIVSETA 117

Query: 255 --------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                             +   +++PGGL+ +++     +  I + + +   +  G    
Sbjct: 118 EAPKHGEPTGEAASEHKVKTRTYHYPGGLEDFVRHINRTKQAIHNSVVSFTGKGTGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SI 357
            +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++
Sbjct: 175 ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  
Sbjct: 235 TGDDIREGLAAIVSVKVAEPQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKT 294

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           +++  +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGG
Sbjct: 295 IVQKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +K+  N ++  ++ A G     ++    LRY+
Sbjct: 355 SAKSGRDSMYQAILPLRGKIINVEKARIDKVLKNNEVQSIITAFGTGIHDEFDISKLRYQ 414

Query: 537 K 537
           K
Sbjct: 415 K 415


>gi|308152491|dbj|BAJ22224.1| DNA gyrase subunit B [Mycobacterium gilvum]
          Length = 421

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 133/427 (31%), Positives = 211/427 (49%), Gaps = 35/427 (8%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
            +NS Y +SGGLHGVG+SVVNALS  + VT+ R    + Q + R +P    +  +  +  
Sbjct: 1   GENSGYAVSGGLHGVGVSVVNALSTRVEVTIQRDGYEWFQYYDRSVPGELKQGGKTKKTG 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY------- 255
              R    PD     +   +D   + +  Q +A+L+  +    + ++  AE+        
Sbjct: 61  TTVRFWADPD---IFETTEYDFETVARRLQEQAFLNKGLTIELTDERVTAEEVVDEVVSD 117

Query: 256 ------------------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                                +   F++PGGL  +++     ++ I   I   + +  G 
Sbjct: 118 TAEAPKTADEKAAESSTGHKVKHRVFHYPGGLVDFVKHINRTKTPIQQSIIDFEGKAAGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRA 354
               VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +     + 
Sbjct: 178 ---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLLKDKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
            ++  DD+      ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP E
Sbjct: 235 PNLTGDDIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKICNEELTHWFDANPAE 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDS
Sbjct: 295 AKTIVNKAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    L
Sbjct: 355 AGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDISKL 414

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 415 RYHKIVL 421


>gi|159146580|gb|ABW90734.1| DNA gyrase beta subunit [Vibrio chagasii]
          Length = 383

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 142/393 (36%), Positives = 213/393 (54%), Gaps = 15/393 (3%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
            +SGGLHGVG+SVVNALS ++ +T+ R   I +Q +  G P +PL       ++ GT I 
Sbjct: 1   RVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYHHGEPQAPLAVIGDT-DQTGTEIR 59

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F P  + F +   F    L K  +  ++L+  V      ++E        + + F F GG
Sbjct: 60  FWPSEETFSNVL-FHYDILAKRLRELSFLNSGVSIKLIDERE------EDKSDHFMFEGG 112

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           ++ ++     N++ I  +IF    E++     TVE A+ W +     I  + N I   +G
Sbjct: 113 IQAFVDHLNTNKTPIIQKIFHFDHERED--GITVEVAMQWNDGYQENIYCFTNNIPQRDG 170

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QTK 
Sbjct: 171 GTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQTKD 230

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAI 444
           KLVS + +  VE A+ +    +L++NP EA  +   +I+ +  R   RK      RK A+
Sbjct: 231 KLVSSEVKSAVEQAMGEKLSEFLIENPTEAKTVCTKIIDAARARDAARKAREMTRRKGAL 290

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  
Sbjct: 291 DLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARF 350

Query: 505 EKIRNNQQIMDLVQALGCRT-RSQYREEDLRYE 536
           +K+ ++Q++  L+ ALGC   R +Y  + LRY 
Sbjct: 351 DKMLSSQEVATLITALGCGIGRDEYNPDKLRYH 383


>gi|19909625|dbj|BAB87008.1| DNA gyrase subunit B [Terasakiella pusilla]
          Length = 402

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 134/408 (32%), Positives = 215/408 (52%), Gaps = 19/408 (4%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------ 199
           ++Y++SGGLHGVG+SVVNALSD L + + R       +F  G  + PL+           
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSDWLELNIYRDGKEHFVRFENGESVEPLKVIGDAPVKADG 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
             + GTR+TF    +IF     +D   L    +  A+L+  V+     ++    K  +  
Sbjct: 61  TAENGTRVTFHASDEIFA-ITEYDYNTLEHRLRELAFLNSGVRMLLRDERHAETKETL-- 117

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT--EKKGTHRGTVEWAIAWCEENPEI-T 316
               ++ GGL  +++    +++ I  E        E        VE ++ W +   E   
Sbjct: 118 ---LHYEGGLLEFVKYVDRSKTAILPEPVFMTGSREDNNGDEVGVEVSMQWNDSYHENVM 174

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFI 374
            + N I   +GGTH +G R ALTR +  YA+ +   + + +    +D+      ++SV +
Sbjct: 175 CFTNNIPQRDGGTHLAGFRGALTRTVNTYAQESGLAKKMKVTIAGEDIREGLTAVVSVKV 234

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            +P+F+ QTK KLVS + +  V+N + +    +  ++P EA +++  + E +  R   RK
Sbjct: 235 PDPKFSSQTKDKLVSSEVRPVVKNLVGEALKEWFEEHPNEARQIIGKICEAAAARDAARK 294

Query: 435 QREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            RE+ R+   +    LPGKLADC +     +ELFIVEGDSAGGSAKQ R+R +QA+LPL+
Sbjct: 295 ARELTRRKGVMDISSLPGKLADCQERDPAKSELFIVEGDSAGGSAKQGRDRKSQAILPLK 354

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
           GKILNV  A  +K+ ++Q++  L+ ALG    R  +  +  RY K+II
Sbjct: 355 GKILNVERARFDKMLSSQEVGTLITALGTGIGRDDFNIDKCRYHKIII 402


>gi|324962648|gb|ADY62426.1| gyrase subunit B [Frankia sp. CjJ14]
          Length = 360

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 106/335 (31%), Positives = 164/335 (48%), Gaps = 21/335 (6%)

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G + V DNGRGIPV  HP    +  +E++LTTLHAGGKFD  +Y +SGGLHGVG+
Sbjct: 1   TLLADGGVRVSDNGRGIPVGEHP-TEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHGVGV 59

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS  L V + R+   + Q +    P +PL K      K GT +TF  D  IF   
Sbjct: 60  SVVNALSTRLEVEIRREGFTWFQPYENTRPAAPLAK-GAPTRKTGTTVTFWADDTIFET- 117

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             +    L +  Q  A+L+  +      ++        P +  + + GGL  +++    +
Sbjct: 118 TDYKYETLSRRLQEMAFLNKGLTINLRDER-----PEEPLEVTYRYAGGLVDFVEHLNAS 172

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  I   + +  ++  G      E A+ W       + ++ NTI T EGGTHE G R AL
Sbjct: 173 KDPIHKTVISLDSKGTGI---EAELAMQWNAGYNESVYTFANTINTHEGGTHEEGFRAAL 229

Query: 339 TRGIKKYAELTQNKRAISIISDD---------LMISAVGILSVFIREPEFAGQTKTKLVS 389
           T  +  YA+     +       +         +      I+SV + +P+F GQTKTKL +
Sbjct: 230 TSAVNAYAKDQNLLKPPKSNGKNSDERLAADDIREGLTAIISVKLAQPQFEGQTKTKLGN 289

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            +A+R V+         +L  N +EA  ++   ++
Sbjct: 290 SEAKRFVQEMCYSALKDWLEANRVEARAIVSKALD 324


>gi|324962646|gb|ADY62425.1| gyrase subunit B [Frankia sp. CjJ11]
          Length = 360

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 106/335 (31%), Positives = 164/335 (48%), Gaps = 21/335 (6%)

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G + V DNGRGIPV  HP    +  +E++LTTLHAGGKFD  +Y +SGGLHGVG+
Sbjct: 1   TLLADGGVRVSDNGRGIPVGEHP-TEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHGVGV 59

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS  L V + R+   + Q +    P +PL K      K GT +TF  D  IF   
Sbjct: 60  SVVNALSTRLEVEIRREGFTWFQPYENTRPAAPLAK-GAPTRKTGTTVTFWADDTIFET- 117

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             +    L +  Q  A+L+  +      ++        P +  + + GGL  +++    +
Sbjct: 118 TDYKYETLSRRLQEMAFLNKGLTINLRDER-----PEEPLEVTYRYAGGLVDFVEHLNAS 172

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  I   + +  ++  G      E A+ W       + ++ NTI T EGGTHE G R AL
Sbjct: 173 KDPIHKTVISLDSKGTGI---EAELAMQWNAGYNESVYTFANTINTHEGGTHEEGFRAAL 229

Query: 339 TRGIKKYAELTQNKRAISIISDD---------LMISAVGILSVFIREPEFAGQTKTKLVS 389
           T  +  YA+     +       +         +      I+SV + +P+F GQTKTKL +
Sbjct: 230 TSAVNAYAKDQNLLKPPKSNGKNSDERLAGDDIREGLTAIISVKLAQPQFEGQTKTKLGN 289

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            +A+R V+         +L  N +EA  ++   ++
Sbjct: 290 SEAKRFVQEMCYSALKDWLEANRVEARAIVSKALD 324


>gi|90185710|emb|CAJ84449.2| gyrase B protein [Listonella anguillarum]
          Length = 382

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 142/392 (36%), Positives = 216/392 (55%), Gaps = 15/392 (3%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G+P +PL    +  +K GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSEKVLLTIYRNGAIHTQTYCHGVPQAPLAVVGET-DKTGTTLRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F    L K  +  ++L+  V      ++E  +K      + F + GG+K
Sbjct: 60  PSAETFTNI-EFHYDILAKRLRELSFLNSGVSIKLLDEREEDKK------DHFRYEGGIK 112

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            ++     N++ I  ++F   +E+      TVE A+ W +     I  + N I   +GG 
Sbjct: 113 AFVGHLNRNKTPIHEKVFHFSSERDD--GITVEVAMQWNDGFQENIYCFTNNIPQRDGGA 170

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QTK KL
Sbjct: 171 HLAGFRGALTRTLNTFMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKL 230

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRK 446
           VS + +  VE+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK A+  
Sbjct: 231 VSSEVKTAVESAMGEKLAEFLAENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDL 290

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 291 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 350

Query: 507 IRNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537
           + ++Q++  L+ ALGC   R +Y  + LRY  
Sbjct: 351 MLSSQEVATLITALGCGIGRDEYNPDKLRYHN 382


>gi|259018152|gb|ACV89668.1| DNA gyrase subunit B [Nocardia harenae]
          Length = 415

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 128/421 (30%), Positives = 209/421 (49%), Gaps = 34/421 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  + V + R  + +SQ +    P      +    +  G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRVEVEIDRDGSHWSQTYKDASPGKL--IQGDATSATG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK---------- 254
           T + F  DP+IF     ++   + +     A+L+  +    +  +  AE+          
Sbjct: 59  TTVRFWADPEIFETT-DYNFETVSRRLHEMAFLNKGLTIKLTDQRVTAEQVTADEAGDTA 117

Query: 255 --------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                             +   +++PGGL+ +++     +  I + +     +  G    
Sbjct: 118 EAPKQAEEAAAEQTEHKVKTRTYHYPGGLENFVRHINRTKQPIHNSVVGFTGKGTGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SI 357
            +E A+ W       + ++ NTI T EGGTHE G R ALT  + +YA+  +  +    ++
Sbjct: 175 ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNRYAKDKKLLKEKDGNL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  
Sbjct: 235 TGDDIREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQKTCNEHLQHWFEANPADAKT 294

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           +++  +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGG
Sbjct: 295 IVQKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPQKSEIYIVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LP+RGKI+NV  A  +++  N ++  ++ A G     ++    LRY 
Sbjct: 355 SAKSGRDSMYQAILPIRGKIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYH 414

Query: 537 K 537
           K
Sbjct: 415 K 415


>gi|305861866|gb|ADM72891.1| DNA gyrase B subunit [Shewanella baltica]
 gi|307947804|gb|ADN96142.1| DNA gyrase B subunit [Shewanella baltica]
 gi|307947809|gb|ADN96144.1| DNA gyrase B subunit [Shewanella baltica]
 gi|307947818|gb|ADN96148.1| DNA gyrase B subunit [Shewanella baltica]
          Length = 386

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 143/397 (36%), Positives = 218/397 (54%), Gaps = 16/397 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS +L +T+ R   ++ Q ++ G+P +P+++        GT I F 
Sbjct: 1   SGGLHGVGVSVVNALSKKLQMTIRRAGKVYEQFYTHGVPDAPIKEIGDATK-TGTEIRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P    F D   F    L K  +  ++L+  V      +++        + E F + GG+ 
Sbjct: 60  PSEDTFSDV-EFHFEILAKRVRELSFLNSGVGIRLIDERDN-------KNEFFKYEGGIS 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            ++     N++ ++ ++F    E++     TVE A+ W +     I  + N I   +GGT
Sbjct: 112 AFVDYLNRNKTPVNKDVFHFMQERED--GITVEVAMQWNDGYQENIFCFTNNIPQRDGGT 169

Query: 330 HESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R ALTR +  Y E      K   S   DD       ++SV + +P+F+ QTK KL
Sbjct: 170 HLVGFRSALTRNLNSYMENEGYNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKL 229

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRK 446
           VS + +  VE  + +  + YL++NP +A  ++  +++ +  R   RK R    RK A+  
Sbjct: 230 VSSEVKTAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDL 289

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 290 GGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 349

Query: 507 IRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
           + ++Q++  L+ ALGC   R +Y  +  RY  +IIMT
Sbjct: 350 MLSSQEVATLITALGCGIGRDEYNPDKTRYHNIIIMT 386


>gi|133778472|dbj|BAF49242.1| DNA gyrase B subunit [Leptospira fainei serovar Hurstbridge]
          Length = 387

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 136/397 (34%), Positives = 209/397 (52%), Gaps = 15/397 (3%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS+ L V V ++  I  QK+++GIP  P+         RGT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSEWLEVEVYQRGKIHYQKYAKGIPQGPVTVIGD-SEARGTVV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PD  IF     F    L    +  A+L+  +K      ++        E+ +F F G
Sbjct: 60  RFKPDATIFTTT-EFQYDVLTARFRELAFLNKGLKLIVKDTRKA-----EVEEHDFLFDG 113

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEG 327
           G+ ++++   EN+  +   I   + +        ++++  +   +  I  + N I    G
Sbjct: 114 GIVSFVEYLNENKHPLHKTIHFERNKDDVVAEIAIQYSDTY---SENIFCFTNNINNSLG 170

Query: 328 GTHESGLRVALTRGIKKYAELTQ---NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GTH  G R ALTR +  + +  Q    K+   +  DDL      ++SV I +P+F  QTK
Sbjct: 171 GTHLEGFRAALTRTLNDFLKKDQQLVKKQPTGLSGDDLKEGLTAVISVKIPQPQFNSQTK 230

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTA 443
            KLV+ + +  ++    +    +  +NP    K+LE  I         R+ +    RKT 
Sbjct: 231 EKLVNAEIKGIMQTLTGEGLSLFFEENPSVTKKILEKCILAAKAREAARKARDLTRRKTV 290

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADCS+    G+EL+IVEGDSAGGSAKQ R+R+ QA+LPL+GKILNV  + 
Sbjct: 291 LEGGGLPGKLADCSEKDPAGSELYIVEGDSAGGSAKQGRDRNYQAILPLKGKILNVEKSR 350

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            +KI  N++I  LV ALG      ++  + +RY K+ 
Sbjct: 351 LDKILGNEEIRTLVSALGTGIGEDEFNVDKIRYHKIF 387


>gi|45736569|dbj|BAD13363.1| DNA gyrase subunit B [Leptospira sp. A 85]
 gi|133778456|dbj|BAF49234.1| DNA gyrase B subunit [Leptospira sp. serovar Manhao]
          Length = 391

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 137/397 (34%), Positives = 218/397 (54%), Gaps = 11/397 (2%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS+ L V V ++  I++QK+ +GIP+SP+E K      RGT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSEYLEVEVHQKGKIYTQKYEKGIPVSPVEIKGDSSE-RGTIV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PD  IF     F    L    +  A+L+  +       +  +E   +   E F F G
Sbjct: 60  RFKPDATIFTTV-DFQFDILSARFRELAFLNKGLVLIVEDRRRGSEGESLLRNE-FQFSG 117

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEG 327
           G+ ++++   EN+  +   I   + +       +++++  + E    I  + N I  + G
Sbjct: 118 GIVSFVEHINENKHPMHKVIHFERNKDDVLAEISIQYSETYTEN---IFCFTNNINNNLG 174

Query: 328 GTHESGLRVALTRGIKKYAELT---QNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GTH  G R ALTR +  + +       K    +  +D+      ++S+ I +P+F  QTK
Sbjct: 175 GTHLEGFRAALTRTLNDFLKKDTTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTK 234

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
            KLV+ + +  ++    +    +  +NP    K+LE  I  ++ R   RK R+   RKT 
Sbjct: 235 EKLVNAEIKGIMQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTV 294

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADCS+     +EL++VEGDSAGGSAKQ R+R+ QA+LPL+GKILNV  A 
Sbjct: 295 LEGGGLPGKLADCSEKDPAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKAR 354

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            +KI ++++I  LV ALG      ++  + +RY K++
Sbjct: 355 LDKILSSEEIRVLVSALGTGIGEDEFNIDKIRYHKIM 391


>gi|68159571|gb|AAY86367.1| gyrase B [Clostridium bolteae]
          Length = 401

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 149/405 (36%), Positives = 209/405 (51%), Gaps = 13/405 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR- 203
           +S Y++SGGLHGVG SVVNALS  LHV V +    ++Q + RGIP +P+++         
Sbjct: 1   DSNYKVSGGLHGVGASVVNALSSHLHVQVDQDGFSYAQSYERGIPAAPVKQLGPCSQGTH 60

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI----AEKYGIPE 259
           GT +TF PD  IF   A      L +  +  A+L+  ++      +      A       
Sbjct: 61  GTTVTFMPDQDIFPSIAWDR-NILEERLRETAFLTQGLEISLYDLRRDPAGEATCPVTAW 119

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SY 318
              F F  GLK ++    ++   + + I +G+ E         E+A+       E   S+
Sbjct: 120 SRTFCFQNGLKDFVSWLEQDGEPLYTGIISGRHETDKVQ---AEFALVHNSSYSEQLLSF 176

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIRE 376
            N I T EGGTH +G R AL+R +  YA   +  +        D+L      +LSV +++
Sbjct: 177 ANNISTPEGGTHVTGFRQALSRAVNDYARNAKLLKDTDSSLSRDELSEGLTAVLSVRLQD 236

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
            +F GQTK KL S   +  VE  +      +L QNP  A  + +  +   + R   R  R
Sbjct: 237 AQFEGQTKQKLGSSHVRPVVEQMVYTRLTLFLEQNPAAAKAICDKAMLARKARTAARTAR 296

Query: 437 EV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E+  RKTA+  L LPGKLADCS       ELFIVEGDSAGGSAK AR+R NQAVLPLRGK
Sbjct: 297 EMARRKTALSGLSLPGKLADCSSKNPGECELFIVEGDSAGGSAKLARSRENQAVLPLRGK 356

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           ILNV  A  ++I  N +I  ++ A G      +  E+LRY K+I+
Sbjct: 357 ILNVEKASLDRISANAEIKAMISAFGTGILDTFSLENLRYNKIIL 401


>gi|291192910|gb|ADD83430.1| DNA gyrase subunit B [Aeromonas caviae]
          Length = 374

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 142/386 (36%), Positives = 213/386 (55%), Gaps = 16/386 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P P IF D   F    L K  +  ++L+  V      +++  E         F + GG+K
Sbjct: 60  PSPTIFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIK 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGT
Sbjct: 112 AFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KL
Sbjct: 169 HLVGFRTALTRTLNNYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
           VS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+  
Sbjct: 229 VSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDI 288

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 289 AGLPGKLADCQEKDPTLSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 348

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED 532
           + ++Q++  L+ ALGC         D
Sbjct: 349 MISSQEVGTLITALGCGIGRDEYNPD 374


>gi|45736563|dbj|BAD13360.1| DNA gyrase subunit B [Leptospira weilii]
 gi|45736565|dbj|BAD13361.1| DNA gyrase subunit B [Leptospira weilii]
 gi|45736567|dbj|BAD13362.1| DNA gyrase subunit B [Leptospira weilii]
          Length = 391

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 136/397 (34%), Positives = 217/397 (54%), Gaps = 11/397 (2%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS+ L V V ++  I++QK+ +GIP+S +E K      RGT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSEYLEVEVHQKGKIYTQKYEKGIPVSSVEIKGDSSE-RGTIV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PD  IF     F    L    +  A+L+  +       +  +E   +   E F F G
Sbjct: 60  RFKPDATIFTTV-DFQFDILSARFRELAFLNKGLVLIVEDRRRGSEGENLLRNE-FQFSG 117

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEG 327
           G+ ++++   EN+  +   I   + +       +++++  + E    I  + N I  + G
Sbjct: 118 GIVSFVEHINENKHPMHKVIHFERNKDDVLAEISIQYSETYTEN---IFCFTNNINNNLG 174

Query: 328 GTHESGLRVALTRGIKKYAELT---QNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GTH  G R ALTR +  + +       K    +  +D+      ++S+ I +P+F  QTK
Sbjct: 175 GTHLEGFRAALTRTLNDFLKKDTTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTK 234

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
            KLV+ + +  ++    +    +  +NP    K+LE  I  ++ R   RK R+   RKT 
Sbjct: 235 EKLVNAEIKGIMQTLSSEGLTLFFEENPSITKKILEKCILSAKAREAARKARDLTRRKTV 294

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADCS+     +EL++VEGDSAGGSAKQ R+R+ QA+LPL+GKILNV  A 
Sbjct: 295 LEGGGLPGKLADCSEKDPAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKAR 354

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            +KI ++++I  LV ALG      ++  + +RY K++
Sbjct: 355 LDKILSSEEIRVLVSALGTGIGEDEFNIDKIRYHKIM 391


>gi|253317615|gb|ACT22745.1| gyrase subunit B [Aeromonas sobria]
          Length = 392

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 142/388 (36%), Positives = 215/388 (55%), Gaps = 16/388 (4%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + 
Sbjct: 6   QVSGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVR 64

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F P P IF D   F    L K  +  ++L+  V      +++  E         F + GG
Sbjct: 65  FWPSPAIFSDTL-FHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------AHFCYEGG 116

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           +K +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +G
Sbjct: 117 IKAFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDG 173

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH  G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK 
Sbjct: 174 GTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKD 233

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444
           KLVS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+
Sbjct: 234 KLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGAL 293

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  
Sbjct: 294 DIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARF 353

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREED 532
           +K+ ++Q++  L+ ALGC         D
Sbjct: 354 DKMISSQEVGTLITALGCGIGRDEYNPD 381


>gi|38224449|gb|AAR14139.1| DNA gyrase B subunit [Fusobacterium necrophorum subsp.
           funduliforme]
          Length = 401

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 132/410 (32%), Positives = 204/410 (49%), Gaps = 14/410 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRN 201
           +N  Y++SGGLHGVGI VVNALS+   V V R+ +++ QK+ RG P+  ++     +   
Sbjct: 1   ENDNYKVSGGLHGVGIFVVNALSEWTEVKVKREGSVYYQKYLRGKPIEDVKIISALEAGE 60

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             GT +TF+PD +IF     F+   L    +  AYL+  ++      +       I +KE
Sbjct: 61  TTGTIVTFKPDIEIFETVI-FEYEVLQHRLKELAYLNRGLEINLLDCR-----NEIGKKE 114

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
            F F GG+  +L+   +    + S+    + + +   +  V+ A  +     EI      
Sbjct: 115 SFQFEGGISDFLKEVTQENQTLLSKQIHIEGQAE---QVGVDIAFTYTTGQSEIIYSFVN 171

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNK-RAISIISDDLMISAVGILSVFIREPEFA 380
            +T             + +G     ++   + +   I           I+SV + +P+F 
Sbjct: 172 NITPPEEALMLPDLELVYKGYNDMEKVRDFEGKRWKITRRRHSGRNWAIISVKVPQPQFE 231

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + +    V   L      +L  NP +   ++E ++   + R   ++ RE   
Sbjct: 232 GQTKTKLGNSEVSGIVNTVLSTDLKIFLEDNPNDTKLIIEKILNSKKAREAAQRAREAVL 291

Query: 441 KTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           + + +    LPGKLADCS       E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV
Sbjct: 292 RKSVLEVGSLPGKLADCSSKKPEECEIFLVEGDSAGGSAKQGRDRYFQAILPLKGKILNV 351

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDG 548
             AG  K   + +I  +V A G     +  + E LRY K+I+MTDADVDG
Sbjct: 352 EKAGLHKALESDEIRAMVTAFGTNIGEESFDLEKLRYGKIILMTDADVDG 401


>gi|3021632|dbj|BAA25336.1| DNA gyrase B subunit [Pseudomonas putida]
          Length = 382

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 141/393 (35%), Positives = 214/393 (54%), Gaps = 16/393 (4%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS++L +TV R   I+ Q +  G+P +P+          GT I F+P
Sbjct: 1   GGLHGVGVSVVNALSEKLILTVRRSGKIWEQTYVHGVPQAPMAVVGD-SETTGTHIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SAETFKNIH-FSWDILAKRIRELSFLNSGVGILLKDERSGKE-------EFFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++S++F    ++       VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTPVNSQVFHFNVQRDD--GVGVEVALQWNDSFNENLLCFTNNIPQRDGGTH 169

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R +LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 170 LVGFRSSLTRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 229

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+   
Sbjct: 230 SSEVKTAVEQEMNKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIA 289

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+
Sbjct: 290 GLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKM 349

Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 350 ISSQEVGTLITALGCGIGREEYNIDKLRYHNII 382


>gi|308152473|dbj|BAJ22215.1| DNA gyrase subunit B [Gordonia terrae]
          Length = 424

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 132/429 (30%), Positives = 210/429 (48%), Gaps = 38/429 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS ++ + +      + Q +S   P +   ++     K G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTKVELEIQNDGYNWEQTYSYAKPGAL--EQGSATRKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE-- 262
           T + F PDP+IF +   F+A  + +  Q  A+L+  +    +  +  A +       +  
Sbjct: 59  TTVRFWPDPEIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEPPGDADGDED 118

Query: 263 ---------------------------FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
                                      +++P GL  Y++     +  I + +     +  
Sbjct: 119 GGSTEAAEVVKSEEEKAAAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGFNAKGD 178

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   +
Sbjct: 179 GH---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLLKE 235

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
           +   +  DD+      ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP
Sbjct: 236 KDGKLTGDDIREGLAAVISVKVSDPQFEGQTKTKLGNTEVKGFVQRTCNEHLGHWFEANP 295

Query: 413 IEATKLLEWVIERSE-ERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
            EA  +++  ++ S+     RR +  V RKTA     LPGKLADC  N     E++IVEG
Sbjct: 296 AEAKIIVKKAVDSSQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEG 355

Query: 472 DSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE 531
           DSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++   
Sbjct: 356 DSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDIS 415

Query: 532 DLRYEKVII 540
            LRY K+++
Sbjct: 416 KLRYHKIVL 424


>gi|198042722|gb|ACH81186.1| GyrB [Vibrio sp. UST981101-011]
          Length = 379

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 138/389 (35%), Positives = 213/389 (54%), Gaps = 14/389 (3%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGV +SVVNALS+++ +T+ R   I +Q +  G P +PL       ++ GT+I
Sbjct: 1   YKVSGGLHGVSVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQI 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F    L K  +  ++L+  V      ++E        + + F F G
Sbjct: 60  RFWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KSDHFMFEG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G++ +++    N++ I  +IF    E++     +VE A+ W +     I  + N I   +
Sbjct: 113 GIQAFVEHLNTNKTPIIEKIFHFDFERED--GISVEVAMQWNDGFQENIYCFTNNIPQRD 170

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QTK
Sbjct: 171 GGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTK 230

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTA 443
            KLVS + +  VE+A+ +    +L++NP EA  +   +I+ +  R   RK R    RK A
Sbjct: 231 DKLVSSEVKSAVESAMGEKLSEFLIENPAEAKMVCSKIIDAARAREAARKAREMTRRKGA 290

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A 
Sbjct: 291 LDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 350

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREED 532
            +K+ ++Q++  L+ ALGC         D
Sbjct: 351 FDKMLSSQEVATLITALGCGIGRDEYNPD 379


>gi|2196830|gb|AAB80832.1| DNA gyrase beta-subunit [Shewanella algae]
          Length = 419

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 133/400 (33%), Positives = 213/400 (53%), Gaps = 15/400 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T L   GKF++ + ++  G   VG+SVVNALS++L +T+ R   ++ Q +  G P 
Sbjct: 1   EVIMTVLRPLGKFEDPSKDVYVGWPRVGVSVVNALSEKLQLTIRRDGKVYEQFYKHGEPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            P+++  +     GT I F P  + F D   F    L K  +  ++L+  V      +++
Sbjct: 61  EPIKEIGEATK-TGTEIRFWPSHETFTD-TEFHYELLAKRIRELSFLNSGVGIRLIDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             +       E F++ GG+K +++    N++ ++ ++F    E+      TVE A+ W +
Sbjct: 119 NKD-------EFFHYEGGIKAFVEYLNRNKTPVNKDVFHFSQERDD--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R ALTR +  Y E      K   +   DD      
Sbjct: 170 GFQESIFCFTNNIPQRDGGTHLAGFRAALTRNLNNYMENEGFNKKGKTNATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            ++SV + +P+F+ QTK KLVS + +  VE  + +  + YL++NP +   ++  + + + 
Sbjct: 230 AVVSVKVPDPKFSSQTKDKLVSSEVKGAVEQTMGEKLNDYLLENPADTKMIVGKIKDAAR 289

Query: 428 ERLRRRKQREVNR-KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK RE+ R K  +    LPGKLADC +     +E++IVEGDSAGGSAKQ RNR N
Sbjct: 290 AREAARKAREMTRCKGVLDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS 526
           QA+LPL+GKI  V  A  +K+   Q++   + ALGC    
Sbjct: 350 QAILPLKGKIFKVEKACFDKMLFFQEVATFITALGCGIGC 389


>gi|51571553|emb|CAH18943.1| gyrase B [Corallococcus coralloides]
          Length = 384

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 135/396 (34%), Positives = 207/396 (52%), Gaps = 17/396 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG++ VN LS+   V V R    + Q +SRG+     ++     +KRGT I F
Sbjct: 1   VSGGLHGVGVTCVNFLSEWFKVRVQRAGKAYEQSYSRGVSNGSPQEVG-TTDKRGTTIHF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +PD  +      F+   L +  +  A+L+  +      ++   E         F F GG+
Sbjct: 60  KPDSTVMETV-DFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD-------FKFDGGI 111

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
            ++++   + +  +  +    K+E++G    ++E A+ W +     I ++ N I T EGG
Sbjct: 112 SSFVEYLNKAKEALHDKPVYIKSEREGV---SLEIAMQWNDGYDERIFTFANNINTHEGG 168

Query: 329 THESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTK 386
           +H SG + ALTR +  YAE     + +      +D       ++SV +  P+F GQTKTK
Sbjct: 169 SHLSGFKAALTRTLNSYAEKGGLWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQTKTK 228

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIR 445
           L + + +  VE  + D    +L +NP  A K++  +          R+ +  V RK  + 
Sbjct: 229 LGNSEVKGLVEQMVNDQLASFLEENPPLAKKVVVKIGDACRARIAARKARETVRRKGVLD 288

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC     H +EL+IVEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  E
Sbjct: 289 GGGLPGKLADCQSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFE 348

Query: 506 KIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
           K+  + +I+ L+ ALG       Y  E  RY ++I+
Sbjct: 349 KMLTSAEIVTLITALGTGIGAEDYDPEKARYHRIIL 384


>gi|323146968|gb|ADX32777.1| DNA gyrase B subunit [endophytic bacterium 12(2011)]
          Length = 235

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 86/247 (34%), Positives = 131/247 (53%), Gaps = 27/247 (10%)

Query: 76  HLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEI 132
           HL  EV+DN++DE +AGY N I+V +  +  +++ DNGRG+P          P +S  EI
Sbjct: 1   HLVFEVLDNSIDEALAGYCNDIQVIIHADNSISITDNGRGVPTGLKMDDKHEPKRSAAEI 60

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP--- 189
           ++T LHAGGKFD ++Y++SGGLHGVG+S VNALS  L +TV R       +F RG+P   
Sbjct: 61  VMTELHAGGKFDQNSYKVSGGLHGVGVSCVNALSAWLRLTVRRDGKKHFMEFHRGVPQNR 120

Query: 190 ---------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
                    +SP++   +  N RGT + F  D  IFG+   +    L K  +  ++L+  
Sbjct: 121 VIEEIGGIAVSPIQVVGETEN-RGTEVHFMADETIFGN-VEYHYDILAKRIRELSFLNNG 178

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
           V+   +  +   E         F F GG+K +++   + +S++   IF    EK G    
Sbjct: 179 VRIRLTDQRSGKEDD-------FAFVGGVKGFVEYINKTKSVLHPTIFHVSGEKDGV--- 228

Query: 301 TVEWAIA 307
            VE A+ 
Sbjct: 229 GVEVAMQ 235


>gi|291192916|gb|ADD83433.1| DNA gyrase subunit B [Aeromonas veronii]
          Length = 374

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 142/386 (36%), Positives = 213/386 (55%), Gaps = 16/386 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P P IF D   F    L K  +  ++L+  V      +++  E         F + GG+K
Sbjct: 60  PSPTIFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIK 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGT
Sbjct: 112 AFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KL
Sbjct: 169 HLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
           VS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+  
Sbjct: 229 VSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDI 288

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 289 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 348

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED 532
           + ++Q++  L+ ALGC         D
Sbjct: 349 MISSQEVGTLITALGCGIGHDEYNPD 374


>gi|262480374|gb|ACY68960.1| DNA gyrase subunit B [Micromonospora sp. 211018]
          Length = 373

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 120/379 (31%), Positives = 196/379 (51%), Gaps = 9/379 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
            SGGLHGVG+SVVNALS  + V + +   ++ Q+++   P    +   +  N+ G+ + F
Sbjct: 1   FSGGLHGVGVSVVNALSTRMEVEIHKSGFVWRQQYTNSKPTPLEK--GETTNRTGSAVAF 58

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PDP +F     FD   + +  Q  A+L+  +      ++    + G P +  F + GG+
Sbjct: 59  WPDPNVFETV-DFDFQTIYRRLQEMAFLNRGLTIHLLDERVPEGEEGKPREVTFLYKGGI 117

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
             +++    +++ I   +     E++G    +VE A+ W E     + ++ NTI T EGG
Sbjct: 118 ADFVRHLNASKNPIHKTVVEFGAEEEG---MSVEIAMQWNESYGESVYTFANTINTHEGG 174

Query: 329 THESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           THE G R ALT  + +Y    +  K    +  +D+      I+SV +  P+F GQTKTKL
Sbjct: 175 THEEGFRAALTSVVNRYGTDRKLLKSDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKL 234

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRKTAIRK 446
            +   +  V+    +    +  +NP EA  +++            ++ ++   RK+ +  
Sbjct: 235 GNTPVKSFVQRVCNEWLVDWFDRNPGEAKTIIQKASQAARARIAAQQARKLARRKSLLES 294

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  ++
Sbjct: 295 GSMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDR 354

Query: 507 IRNNQQIMDLVQALGCRTR 525
           +  N ++  L+ ALG    
Sbjct: 355 VLKNNEVQALITALGTGIH 373


>gi|317420204|emb|CBW30259.1| gyrase B subunit [Pseudoalteromonas paragorgicola]
          Length = 383

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 133/389 (34%), Positives = 208/389 (53%), Gaps = 15/389 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS++L +TV R+  +  Q ++ G+P +PL          GT + F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLKLTVRREGKLHEQFYTMGVPDAPLAVIGD-SETTGTELRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F +   F    L K  +  ++L+  V    + ++E        + + F + GG+
Sbjct: 60  WPSAETFTNL-DFHYDILAKRLRELSFLNSGVSIILNDERE------ENKSDHFKYEGGI 112

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           + +++    N++ I   +F    E++     +VE ++ W +     I  + N I   +GG
Sbjct: 113 QAFVEYLNRNKTPIHKGVFHFTHERE-EDGISVEVSMQWNDAYQENIYCFTNNIPQRDGG 171

Query: 329 THESGLRVALTRGIKKYA----ELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           TH +G R ALTR +  Y        + K   +   DD       ++SV + +P+F+ QTK
Sbjct: 172 THLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKFSSQTK 231

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTA 443
            KLVS + +  VE A+ + F  +L++NP +A  ++  +I+ S  R   RK R    RK A
Sbjct: 232 DKLVSSEVKSAVEQAMAEKFTEFLLENPTDAKIVVGKIIDASRAREAARKAREMTRRKGA 291

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A 
Sbjct: 292 MDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 351

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREED 532
            +K  ++Q++  L+ A            +
Sbjct: 352 FDKXLSSQEVATLITAFRYGIGRDEYNPE 380


>gi|308153192|dbj|BAJ22185.1| DNA gyrase subunit B [Corynebacterium flavescens]
          Length = 443

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 139/449 (30%), Positives = 217/449 (48%), Gaps = 59/449 (13%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  +   + R    + Q FS  IP   +E         G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRVEAEIKRDGKHWYQNFSNAIPEDLVE--GGNARGTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK---------- 254
           T I F  DP+IF     +D   + +  Q  A+L+  +      ++   E+          
Sbjct: 59  TIIRFWADPEIFETT-EYDFKVISRRLQEMAFLNKGLTIELIDERVTREQLELEAIADAE 117

Query: 255 ---------------------------------------YGIPEKEEFYFPGGLKTYLQT 275
                                                    + +K  FY+P GL  Y++ 
Sbjct: 118 SGETTLDAESFDDTDGSAGVDPDASADLSTGAPEAKKSGKKLQKKITFYYPDGLIDYVKF 177

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             ++++ I   I     + +      VE A+ W +     + ++ NTI T EGGTHE G 
Sbjct: 178 LNKSKTPIHPTIVAFDAKGE---EHEVEVAMQWNQGYKESVHTFANTINTYEGGTHEEGF 234

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALT  + +YA+  +   ++  ++  DD       ++SV + +P+F GQTKTKL + + 
Sbjct: 235 RAALTSLMNRYAKEHKLIKEKDGNLSGDDCREGLAAVISVKVGDPQFEGQTKTKLGNSEI 294

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPG 451
           +  V+ A+ +  + +   NP EA  ++   +  +  R+  RK RE+  RK+A     LPG
Sbjct: 295 KGFVQRAVNEHVNDWFDANPAEAKAIINKAVSSAHARMAARKAREMVRRKSATDLGGLPG 354

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC       +EL+IVEGDSAGGSAK  R+   QA+LPLRGKILNV  A  +K+  N 
Sbjct: 355 KLADCRSKDPKISELYIVEGDSAGGSAKGGRDSMFQAILPLRGKILNVEKARMDKVLKNA 414

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVII 540
           ++  ++ ALG     ++  + LRY+K+++
Sbjct: 415 EVQAIITALGTGIHEEFDIKKLRYDKIVL 443


>gi|238477927|gb|ACR43657.1| DNA gyrase subunit B [Aeromonas caviae]
 gi|238477934|gb|ACR43660.1| DNA gyrase subunit B [Aeromonas caviae]
 gi|238477938|gb|ACR43662.1| DNA gyrase subunit B [Aeromonas caviae]
 gi|269849459|gb|ACZ49798.1| DNA gyrase subunit B [Aeromonas caviae]
 gi|281486949|gb|ADA71022.1| DNA gyrase subunit B [Aeromonas caviae]
 gi|281486951|gb|ADA71023.1| DNA gyrase subunit B [Aeromonas caviae]
 gi|291192908|gb|ADD83429.1| DNA gyrase subunit B [Aeromonas caviae]
 gi|291192924|gb|ADD83437.1| DNA gyrase subunit B [Aeromonas caviae]
          Length = 374

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 142/386 (36%), Positives = 213/386 (55%), Gaps = 16/386 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P P IF D   F    L K  +  ++L+  V      +++  E         F + GG+K
Sbjct: 60  PSPTIFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIK 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGT
Sbjct: 112 AFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KL
Sbjct: 169 HLVGFRTALTRTLNNYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
           VS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+  
Sbjct: 229 VSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDI 288

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 289 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 348

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED 532
           + ++Q++  L+ ALGC         D
Sbjct: 349 MISSQEVGTLITALGCGIGRDEYNPD 374


>gi|126734075|ref|ZP_01749822.1| DNA gyrase, B subunit [Roseobacter sp. CCS2]
 gi|126716941|gb|EBA13805.1| DNA gyrase, B subunit [Roseobacter sp. CCS2]
          Length = 489

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 110/255 (43%), Positives = 164/255 (64%), Gaps = 1/255 (0%)

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +S+  DD       +LSV + +P+F+ QTK KLVS + +  VEN + +  + +  +NP E
Sbjct: 1   MSLTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENLMGEKLNEWFEENPNE 60

Query: 415 ATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSA 474
           A  ++  ++E +  R   RK RE+ RK+A+       KL DCS+     TE+F+VEGDSA
Sbjct: 61  AKMIISKIVEAAAAREAARKAREIRRKSAMDVNFNASKLKDCSEKDPSKTEVFLVEGDSA 120

Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDL 533
           GGSA+  R+RS QA+LPL+GKILNV  A  +++  +Q+I +LV ALG    R ++  + L
Sbjct: 121 GGSAQTGRDRSTQAILPLKGKILNVERARFDRMLGSQEIGNLVMALGTGIGRDEFNIDKL 180

Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHD 593
           RY KVIIMTDADVDGAHI +LLLTFF+++M +L+E  +L++  PPL+++++G   VY  D
Sbjct: 181 RYHKVIIMTDADVDGAHIRTLLLTFFFRQMPELVEGGYLYIAQPPLYKVSRGKSEVYLKD 240

Query: 594 EEHKQKILEEFKKHG 608
           +    + L E    G
Sbjct: 241 QPAMDEYLIEQGIDG 255



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L+   + G+  + + R+KGLGEM   QL ET +D + RTLL+V++      + +  D 
Sbjct: 406 DLLKAILEEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVKVED----VAEADDL 461

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
             KLMG   + R +FIQ  A  ++++ 
Sbjct: 462 FTKLMGDVVEPRREFIQNNALNVENLD 488


>gi|259018170|gb|ACV89677.1| DNA gyrase subunit B [Nocardia asteroides]
          Length = 415

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 132/421 (31%), Positives = 208/421 (49%), Gaps = 34/421 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS +L   +      ++Q +    P      + +   + G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSKLEAEIDNDGYHWTQVYKDAKPGKL--VQGEATQRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T I F  DP+IF     ++   + +  Q  A+L+  +    +  +               
Sbjct: 59  TTIRFWADPEIFETTT-YNFETVSRRLQEMAFLNKGLTITLTDQRVSESDVIDEVVSDTA 117

Query: 250 ---EIAEKYGIPEKEE------FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
              + AE+      E       +++PGGL  +++     +  I + +     +  G    
Sbjct: 118 EAPKHAEEGVEKPVEHKVKTRTYHYPGGLVDFVRHINRTKQAIHNSVVGFTGKGTGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SI 357
            +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++
Sbjct: 175 ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKEKKLLKEKDGNL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  
Sbjct: 235 TGDDIREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRACNEHLTHWFEANPADAKT 294

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           +++  +  ++ R+  RK RE V RK+A     LPGKLADC        E++IVEGDSAGG
Sbjct: 295 IVQKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKCEIYIVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY 
Sbjct: 355 SAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYH 414

Query: 537 K 537
           K
Sbjct: 415 K 415


>gi|324331798|gb|ADY38685.1| DNA gyrase subunit B [Ignatzschineria sp. NML 96-0243]
          Length = 372

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 133/381 (34%), Positives = 207/381 (54%), Gaps = 16/381 (4%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS +L +T+ +   I  Q+++ G P  PL +  +  +K GT + F+P   +
Sbjct: 1   GVGVSVVNALSSKLKLTIYKHGKIHEQEYTVGEPDYPLREIGET-DKNGTTVYFKPSKDV 59

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F D   F+   L K  +  A+L+  ++     ++   E       E F + GG+K Y++ 
Sbjct: 60  FTDI-DFEFDILFKRLRELAFLNSGIRIVLKDERTDRE-------EIFEYEGGIKAYVEL 111

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             +NR+ I  +IF    ++       VE A  W +     +  Y N I   +GGTH +G 
Sbjct: 112 INKNRNEIHPDIFYCDCQRDNI---NVEIAFQWTDGYQESVFCYTNNIPQSDGGTHLAGF 168

Query: 335 RVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R A+TR + +Y +     + +      DD       I+SV I  P+F+ QTK KLVS + 
Sbjct: 169 RAAMTRTLNRYMQDEGLLKKVKVATTGDDAREGLTAIISVKIPGPKFSSQTKEKLVSSEV 228

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPG 451
           +  V++ L +  + +L+++P +A  +   +I+ +  R   RK RE   RK+A+    LPG
Sbjct: 229 RPVVDSVLAERLEQFLLEHPDDAKAITSKIIDAAMAREAARKARENTRRKSALDIAGLPG 288

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +ELFIVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +++ ++ 
Sbjct: 289 KLADCQEKDPAQSELFIVEGDSAGGSAKQGRSRKFQAILPLKGKILNVERARFDRMISSA 348

Query: 512 QIMDLVQALGCRTRSQYREED 532
           +I  L+ ALGC       + D
Sbjct: 349 EIGTLITALGCGIGRDEFDPD 369


>gi|113912341|gb|ABI48367.1| DNA gyrase subunit B [Pseudomonas fragi]
          Length = 393

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 143/399 (35%), Positives = 216/399 (54%), Gaps = 17/399 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P +P+    +     GT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSELLVLTVRRSGKIWEQTYVHGVPQAPMAIVGE-SETTGTQ 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F+P  + F +   F    L K  +  ++L+  V      ++   E       E F + 
Sbjct: 60  IHFKPSAETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYE 111

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GGL+ ++     N++ ++         + G     VE A+ W +     +  + N I   
Sbjct: 112 GGLRAFVDYLNTNKNPVNQVFHFNVQREDGI---GVEIALQWNDSFNENLLCFTNNIPQR 168

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH  G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QT
Sbjct: 169 DGGTHLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQT 228

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKT 442
           K KLVS + +  VE  +   F  +L+++P EA  ++  +I+ +  R   RK R    RK 
Sbjct: 229 KDKLVSSEVKTAVEQEMGKFFSDFLLEHPNEAKLIVGKMIDAARAREAARKAREMTRRKG 288

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A
Sbjct: 289 ALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKA 348

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
             +K+ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 349 RFDKMISSQEVGTLITALGCGIGREEYNIDKLRYHNIII 387


>gi|27530823|dbj|BAC54059.1| DNA gyrase subunit B [Nocardia salmonicida]
          Length = 418

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 130/424 (30%), Positives = 209/424 (49%), Gaps = 34/424 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS ++ V +      ++Q +    P    +   +     G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTKVEVEIDVDGYHWTQTYKDAKPGKLAQ--GEATKATG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T + F  DP IF     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTVRFWADPDIFETTT-YNFETVARRLQEMAFLNKGLTIKLTDERVAVGDVIDEVVSETA 117

Query: 250 ---------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                             +   +++PGGL  +++     +S I + +     +  G    
Sbjct: 118 EAPKDAEVVAAEAAEHKVKTRTYHYPGGLVDFVRHINRTKSAIHNSVVGYTVKGTGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SI 357
            +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++
Sbjct: 175 ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKEKKLLKEKDGNL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  
Sbjct: 235 TGDDIREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRACNEHLQHWFEANPADAKT 294

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           +++  +  ++ R+  RK RE V RK+A     LPGKLADC        E++IVEGDSAGG
Sbjct: 295 IVQKAVSSAQARMAARKARELVRRKSATDLGGLPGKLADCRSKDPGKCEIYIVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY 
Sbjct: 355 SAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYN 414

Query: 537 KVII 540
           K+I+
Sbjct: 415 KIIL 418


>gi|126661929|ref|ZP_01732928.1| DNA topoisomerase IV, subunit B [Flavobacteria bacterium BAL38]
 gi|126625308|gb|EAZ95997.1| DNA topoisomerase IV, subunit B [Flavobacteria bacterium BAL38]
          Length = 365

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 103/390 (26%), Positives = 177/390 (45%), Gaps = 50/390 (12%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIG-----GTDEKALHHLFSEVIDNAMDEVIAGYANL 96
           + Y   +IR L+  E +RMRPGMYIG      + +  ++ L  EV+DN +DE + G    
Sbjct: 5   NQYTEDNIRSLDWKEHIRMRPGMYIGKLGDGSSPDDGIYILLKEVMDNCIDEFVMGAGKT 64

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           IEV++  +  +TV D GRGIP+           +  +++ ++ GGK+D+  ++ S GL+G
Sbjct: 65  IEVTI-KDKLVTVRDYGRGIPLGK---------VVDVVSKMNTGGKYDSKAFKKSVGLNG 114

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG   VNALS+   V   R N   + +FS G      + + +   ++GT+++F  D  IF
Sbjct: 115 VGTKAVNALSNFFRVESVRDNQQKAAEFSAGNLTIEEDVQ-ETTKRKGTKVSFIADEAIF 173

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   +    ++KM ++  YL+  +   ++ +K             +    GLK  L+  
Sbjct: 174 KN-YKYRNEYIIKMLKNYCYLNRGLTIYYNGEK-------------YISEFGLKDLLEEN 219

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRV 336
           +    ++   I     E        V    +  + + E  S+ N   T +GGTH    R 
Sbjct: 220 IAEEDMVYPIIHL---EGDDI---EVAITHSKSQYSEEYHSFVNGQNTTQGGTHLGAFRE 273

Query: 337 ALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA---- 392
           A+ + IK++             + D+  S V  +SV + EP F  QTKTKL S D     
Sbjct: 274 AIVKTIKEFYN-------KPFEASDIRKSIVSAVSVKVEEPVFESQTKTKLGSTDIGPNG 326

Query: 393 ---QRTVENALRDPFDHYLVQNPIEATKLL 419
              +  V + ++   D++L +         
Sbjct: 327 PSVRTFVNDFIKTNLDNFLHKIRKLPMHYC 356


>gi|324962650|gb|ADY62427.1| gyrase subunit B [Frankia sp. CmF1]
          Length = 360

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 106/335 (31%), Positives = 163/335 (48%), Gaps = 21/335 (6%)

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G + V DNGRGIPV  HP    +  +E++LTTLHAGGKFD  +Y +SGGLHGVG+
Sbjct: 1   TLLADGGVRVSDNGRGIPVGEHP-TEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHGVGV 59

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS  L V + R+   + Q +    P +PL K      K GT +TF  D  IF   
Sbjct: 60  SVVNALSTRLEVEIRREGFTWFQPYENTRPAAPLAK-GAPTRKTGTTVTFWADDTIFET- 117

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             +    L +  Q  A+L+  +      ++        P +  + + GGL  +++    +
Sbjct: 118 TEYKYETLSRRLQEMAFLNKGLTISLRDER-----PEEPLEVTYRYAGGLVDFVEHLNAS 172

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  I   + +  ++  G      E A+ W       + ++ NTI T EGGTHE G R AL
Sbjct: 173 KDPIHKTVISLDSKGTGI---EAELAMQWNAGYNESVYTFANTINTHEGGTHEEGFRAAL 229

Query: 339 TRGIKKYAELTQNKRAISIISDDL---------MISAVGILSVFIREPEFAGQTKTKLVS 389
           T  +  YA+     +       +                I+SV + +P+F GQTKTKL +
Sbjct: 230 TSAVNAYAKDQNLLKPRKANGKNPDERLAGDDIREGLTAIISVKLAQPQFEGQTKTKLGN 289

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            +A+R V+         +L  N +EA  ++   ++
Sbjct: 290 SEAKRFVQEMCYSALKDWLEANRVEARAIVSKALD 324


>gi|116488841|gb|ABJ98771.1| DNA gyrase B [Ruegeria pomeroyi]
          Length = 382

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 130/386 (33%), Positives = 198/386 (51%), Gaps = 13/386 (3%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALSD L + + R       +F RG  +  L    +  ++ GT + 
Sbjct: 1   QVSGGLHGVGVSVVNALSDWLELRIWRHGKEHVARFERGDTVEHLRVVGECGDRTGTEVR 60

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F      F +   +    L K  +  A+L+  V+     ++              ++ GG
Sbjct: 61  FLASTTTFSN-LDYVFETLEKRLRELAFLNSGVRIILIDERPAERIETE-----LFYEGG 114

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           ++ +++    ++S +       K E+       VE A+ W +     +  + N I   +G
Sbjct: 115 VREFVKYLDRSKSPVMPAPIYFKGERDDI---GVEIAMWWNDSYHETVLPFTNNIPQRDG 171

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH +G R ALTR I  YA+ +   +   I+   DD       +LSV + +P+F+ QTK 
Sbjct: 172 GTHVAGFRGALTRTINNYAQSSGIAKREKINFTGDDAREGLTCVLSVKVPDPKFSSQTKD 231

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444
           KLVS + +  VEN + +    +  +NP  A +++  +IE +  R   RK RE   RKTA+
Sbjct: 232 KLVSSEVRPAVENLVNEKLAEWFEENPNVAKQIVGKIIEAALAREAARKARELTRRKTAM 291

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               L GKL DCS+     TE+F+VEGDSAGGSA+  R+R  QAVLPLRGKILNV  A  
Sbjct: 292 DVNYLAGKLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRRTQAVLPLRGKILNVERARF 351

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYRE 530
           +++  +Q+I +LV ALG         
Sbjct: 352 DRMLGSQEIGNLVMALGTGIGRDEFN 377


>gi|321401438|gb|ADW83181.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
          Length = 363

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 143/367 (38%), Positives = 204/367 (55%), Gaps = 10/367 (2%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA-RQNTIFSQKFSRGIPLSPLEKKE 197
           AGGKFD  +Y++SGGLHGVG+SVVNALS+ L  TV      I+ Q++ +G  L P+++  
Sbjct: 2   AGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGKIYEQEYEKGKALYPVKQIG 61

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +    RGT +TF PDP IF     +    L    +  ++L+  +   ++  +E  +K G 
Sbjct: 62  ETTK-RGTIVTFYPDPSIFTQTIEYSYDTLSARMRELSFLNKGITITFTDKRE-KDKDGN 119

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
              E F+   GLK Y++    NR      I    +         VE A+ +       I 
Sbjct: 120 FVSEIFHSTEGLKEYIRYLDGNRE---PIIAHVISMDNDKGEIPVEVALIYNTSYTENIF 176

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFI 374
           SY N I T EGGTH  G R  LTR +KKYA+ +    K    I  DD       I+SV +
Sbjct: 177 SYVNNINTHEGGTHLQGFRTGLTRSLKKYADSSGMLDKLKFEISGDDFREGLTAIISVKV 236

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP+F GQTKTKL + +    V  A+ D  ++YL +NP +A  +++ VI  ++ R   +K
Sbjct: 237 AEPQFEGQTKTKLGNREVVSPVSQAVGDMIENYLEENPNDARIIVQKVILAAQARHAAKK 296

Query: 435 QREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            RE+ ++  +     LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLR
Sbjct: 297 AREMVQRKTVWGGGGLPGKLSDCSEQDPAKCEVFLVEGDSAGGTAKQGRDRAFQAILPLR 356

Query: 494 GKILNVA 500
           GKILNV 
Sbjct: 357 GKILNVE 363


>gi|62633150|gb|AAX89533.1| DNA gyrase subunit B [Vibrio sp. CF6]
          Length = 378

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 136/385 (35%), Positives = 208/385 (54%), Gaps = 14/385 (3%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GG   N++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +  G P +PL      
Sbjct: 1   GGNSMNNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVGDT 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            ++ GT I F P  + F +   F    L K  +  ++L+  V       +E        +
Sbjct: 61  -DETGTEIRFWPSEETFNN-IEFHYDILAKRLRELSFLNSGVSIKLIDKRE------EDK 112

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
            + F + GG++ +++    N++ I  +IF    E++     TVE A+ W +     I  +
Sbjct: 113 MDHFEYEGGIQAFVEHLNTNKTPIIQKIFHFDHERED--GITVEVAMQWNDGYQENIYCF 170

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GG H +G R ALTR +  + +      K   S   DD       I+SV + +
Sbjct: 171 TNNIPQRDGGAHLAGFRGALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPD 230

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQ 435
           P+F+ QTK KLVS + +  VE+ + +    +L++NP EA  +   +I         R+ +
Sbjct: 231 PKFSSQTKDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAR 290

Query: 436 REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
               RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GK
Sbjct: 291 EMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGK 350

Query: 496 ILNVASAGSEKIRNNQQIMDLVQAL 520
           ILNV  A  +K+ ++Q+++ L  AL
Sbjct: 351 ILNVEKARFDKMLSSQEVVTLNTAL 375


>gi|308153194|dbj|BAJ22186.1| DNA gyrase subunit B [Dietzia sp. MBIC1537]
          Length = 449

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 143/455 (31%), Positives = 213/455 (46%), Gaps = 65/455 (14%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  + V + R   ++ Q F   +P              G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRVEVQIKRDGRLWLQDFDMAVPAEL--VDSGPAEGTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC----------------- 247
           TR+ F  DP IF     +D   + +  Q  A+L+  +                       
Sbjct: 59  TRVRFWADPTIFEST-EYDFDVVARRLQEMAFLNKGLTITLIDRRAVAEQAAELDAIADS 117

Query: 248 ------------------------------DKEIAEKYGIP--------EKEEFYFPGGL 269
                                         D +  EK   P         K  F++P GL
Sbjct: 118 EGGHDGGPGSDEGSNVDGAVDAEKAFTEGADADSGEKAEAPAGSAKGRERKRTFHYPDGL 177

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K Y+    ++++ I   I   + +  G     VE A+ W       + ++ NTI T EGG
Sbjct: 178 KDYVTAINKSKTAIHPTILYFEGKGTGH---EVEVAMQWNSGYSESVHTFANTINTHEGG 234

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           THE G R ALT  + KYA   +   ++  ++  DD+      ++S  I +P+F GQTKTK
Sbjct: 235 THEEGFRAALTSLVNKYAREKKLLKEKDPNLTGDDIREGLAAVISAKIGDPQFEGQTKTK 294

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIR 445
           L + + +  V+  + D   H+   NP EA  ++   I  S+ R+  RK RE+  RK+A  
Sbjct: 295 LGNTEVKGFVQRQVSDHVGHWFEANPAEAKTIVNKAIASSQARVAARKAREMVRRKSATD 354

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC       +EL+IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  +  +
Sbjct: 355 IGGLPGKLADCRSKDPSKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKSRID 414

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           K+  N ++  ++ ALG     ++  + LRY K+++
Sbjct: 415 KVLKNAEVQAIITALGTGIHEEFDIDKLRYHKIVL 449


>gi|314940665|gb|ADT64458.1| DNA gyrase subunit B [Ochrobactrum sp. MJ11]
          Length = 376

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 135/384 (35%), Positives = 213/384 (55%), Gaps = 12/384 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D ++Y++SGGLHGVG+SVVNALS  L + + R   I    F+ G+  +PL    +  N+ 
Sbjct: 1   DQNSYKVSGGLHGVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVATGEAGNET 60

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT ++F P P+ F     FD   L +  +  A+L+  V+   +  +    K         
Sbjct: 61  GTEVSFLPSPETFS-MVEFDFDTLERRLRELAFLNSGVRIKLADHRHADVKEHE-----L 114

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           ++ GGL  +++   +++  +  E    + EK G    TVE A+ W +    ++  + N I
Sbjct: 115 HYDGGLVEFVKYIDQSKKSLLEEPIYIRNEKDG---MTVEVAMWWNDSYHEKVLCFTNNI 171

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  YA+ +    K  +++  DD       +LSV + +P+F+
Sbjct: 172 PQRDGGTHLAGFRGALTRQVTGYADASGMTKKEKVTLTGDDCREGLTAVLSVKVPDPKFS 231

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
            QTK KLVS + +  VE+ + +    +L ++P     ++E VI+ +  R   RK R++ R
Sbjct: 232 SQTKDKLVSSEVRPVVESLVNEALSTWLEEHPAGGKAVVEKVIQAAAAREAARKARDITR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+ +    LPGKLADC +     +ELFIVEGDSAGGSAK  R+R NQA+LPLRGKILNV 
Sbjct: 292 KSTLTVTSLPGKLADCQERDPAKSELFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT 524
               +++ +++Q+  L+ ALG   
Sbjct: 352 RVRFDRMLSSEQVGTLITALGTSI 375


>gi|308153088|dbj|BAJ22133.1| DNA gyrase subunit B [Streptomyces griseus]
          Length = 403

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 131/405 (32%), Positives = 202/405 (49%), Gaps = 20/405 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y +SGGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL + E      GT +
Sbjct: 1   YTVSGGLHGVGVSVVNALSTRVAVEVKTDGHRWTQDYKLGVPTAPLAQHEATEE-TGTTV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE-------------- 253
           TF  D  IF     +    L +  Q  A+L+  +    + ++E A+              
Sbjct: 60  TFWADGDIFETT-EYSFETLSRRFQEMAFLNKGLTLKLTDERESAKATAGADSVDAAEPS 118

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
           +        +++  G+  +++     +  +  +       +      +VE A+ W  +  
Sbjct: 119 EEETARSVTYHYENGIVDFVKYLNSRKGDVIHQSVIDIEAEDKDRLLSVEIAMQWNTQYT 178

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGIL 370
             + S+ N I T EGGTHE G R ALT  + +YA   +    +  ++  +D+      I+
Sbjct: 179 EGVYSFANAIHTHEGGTHEEGFRAALTSLVNRYARDKKLLRDKDDNLTGEDVREGLTAII 238

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV + EP+F GQTKTKL + +A+  V+  + +    +  +NP EA  ++   I  S  R+
Sbjct: 239 SVKLGEPQFEGQTKTKLGNTEAKTFVQKVVHEQLTDWFDRNPNEAADIIRKGIAASTARV 298

Query: 431 RRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK R++ R+  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+
Sbjct: 299 AARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPMYQAI 358

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
           LP+RGKILNV  A  +KI  N ++  L+ A G      +  E LR
Sbjct: 359 LPIRGKILNVEKARVDKILQNTEVQALISAFGTGVHEDFDIEKLR 403


>gi|321401440|gb|ADW83182.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
          Length = 362

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 146/366 (39%), Positives = 205/366 (56%), Gaps = 10/366 (2%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA-RQNTIFSQKFSRGIPLSPLEKKE 197
           AGGKFD  +Y++SGGLHGVG+SVVNALS+ L  TV      I+ Q++ +G  L P+++  
Sbjct: 2   AGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGKIYEQEYEKGKALYPVKQIG 61

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +    RGT +TF PDP IF     +    L    +  ++L+  +   ++  +E  +K G 
Sbjct: 62  ETTK-RGTIVTFYPDPSIFTQTIEYSYDTLSARMRELSFLNKGITITFTDKRE-KDKDGN 119

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
              E F+   GLK Y++    NR      I    +         VE A+ +       I 
Sbjct: 120 FVSEIFHSTEGLKEYIRYLDGNRE---PIIAHVISMDNDKGEIPVEVALIYNTSYTENIF 176

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFI 374
           SY N I T EGGTH  G R  LTR +KKYA+ +    K    I  DD       I+SV +
Sbjct: 177 SYVNNINTHEGGTHLQGFRTGLTRSLKKYADSSGMLDKLKFEISGDDFREGLTAIISVKV 236

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP+F GQTKTKL + +    V  A+ D  ++YL +NP +A  +++ VI  ++ R   +K
Sbjct: 237 AEPQFEGQTKTKLGNREVVSPVSQAVGDMIENYLEENPNDARIIVQKVILAAQARHAAKK 296

Query: 435 QREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            RE+  RKT +    LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLR
Sbjct: 297 AREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVFLVEGDSAGGTAKQGRDRAFQAILPLR 356

Query: 494 GKILNV 499
           GKILNV
Sbjct: 357 GKILNV 362


>gi|199974958|gb|ACH92124.1| DNA gyrase subunit B [Sphaerotilus natans subsp. natans]
          Length = 401

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 138/407 (33%), Positives = 211/407 (51%), Gaps = 23/407 (5%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL-----------SPLEKKEK 198
           +SGGLHGVG+S VN LS  L +TV R   +   +F +G+P            +   +   
Sbjct: 1   VSGGLHGVGVSCVNGLSKWLRLTVRRDGRVHQIEFRKGVPQDRVIERRDGVETSPMRVTG 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +KRGT + F PD +IF     F    L K  +  ++L+  VK     ++         
Sbjct: 61  ETDKRGTEVHFLPDTEIFQQNNEFHYDILAKRLRELSFLNNGVKIRLVDER------NGG 114

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK--KGTHRGTVEWAIAWCEENPEI- 315
           +++ F + GG+K +++   + +  +   IF    EK         VE A+ W +   E  
Sbjct: 115 KEDNFAYAGGVKGFVEFVNKGKRTLHPNIFHALGEKPSDQGTTIGVEVAMQWNDAFSENV 174

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +GLR A+TR I KY E      K  + I  +D+      ++SV 
Sbjct: 175 LCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEDNDIAKKAKVEISGEDMREGLACVVSVK 234

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + EP+F+ QTK KLVS + +  VE+ +      +L++NP +A  +   +++ +  R   R
Sbjct: 235 VPEPKFSSQTKDKLVSSEVRAPVEDIVSRLLTDWLLENPTDAKTICGKIVDAARARDAAR 294

Query: 434 KQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           K RE+ R+   +  L LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPL
Sbjct: 295 KAREMTRRKGVLDGLGLPGKLADCQEKDPSLCEIYIVEGDSAGGSAKQGRDRKFQAILPL 354

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
           RGKILNV  A  EK+ ++ +I+ L+ ALG         +D   +K+ 
Sbjct: 355 RGKILNVERARYEKLLSSNEIITLITALGTGIGQGMGTDDFNPDKLR 401


>gi|3021638|dbj|BAA25339.1| DNA gyrase B subunit [Pseudomonas putida]
          Length = 382

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 141/393 (35%), Positives = 215/393 (54%), Gaps = 16/393 (4%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS++L +TV R   I+ Q +  G+P +P+    +     GT I F+P
Sbjct: 1   GGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGE-SETTGTHIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SAETFKNIH-FSWDILAKRIRELSFLNSGVGILLKDERSGKE-------EFFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++S++F    ++       VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTPVNSQVFHFNVQRDD--GVGVEVALQWNDSFNENLLCFTNNIPQRDGGTH 169

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R +LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 170 LVGFRSSLTRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 229

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+   
Sbjct: 230 SSEVKTAVEQEMNKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIA 289

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+
Sbjct: 290 GLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKM 349

Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 350 ISSQEVGTLITALGCGIGREEYNIDKLRYHNII 382


>gi|281486947|gb|ADA71021.1| DNA gyrase subunit B [Aeromonas allosaccharophila]
          Length = 374

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 141/386 (36%), Positives = 213/386 (55%), Gaps = 16/386 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-CTGTEVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P P IF D   +    L K  +  ++L+  V      +++  E         F + GG+K
Sbjct: 60  PSPTIFTDTL-YHYEILAKRLRELSFLNSGVSIRLVDERDGRE-------AHFCYEGGIK 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGT
Sbjct: 112 AFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KL
Sbjct: 169 HLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
           VS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+  
Sbjct: 229 VSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDI 288

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 289 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 348

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED 532
           + ++Q++  L+ ALGC         D
Sbjct: 349 MISSQEVGTLITALGCGIGRDEYNPD 374


>gi|51571587|emb|CAH18960.1| gyrase B [Corallococcus coralloides]
          Length = 376

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 132/388 (34%), Positives = 205/388 (52%), Gaps = 16/388 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG++ VN LS+   V + R   +  Q ++RG+  SP  +     +KRGT I
Sbjct: 1   YKVSGGLHGVGVTCVNFLSEWFKVRIQRNGKVXEQGYARGVANSPPTEVG-TTDKRGTMI 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PDP I      F+   L +  +  A+L+  +      ++   +         F F G
Sbjct: 60  HFKPDPTIMETA-DFNFETLSQRLRELAFLNAGLHITIRDERTQKDDD-------FKFDG 111

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+ ++++   + +  +  +    K+E++G    ++E A+ W +     I ++ N I T E
Sbjct: 112 GIASFVEYLNKAKEALHDKPVFIKSEREGV---SLEIAMQWNDGYDERIFTFANNINTHE 168

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTK 384
           GG+H SG + ALTR +  YAE     + +      +D       ++SV +  P+F GQTK
Sbjct: 169 GGSHLSGFKAALTRTLNSYAEKGGAWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQTK 228

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTA 443
           TKL + + +  VE  + D    +L +NP  A K++  V          R+ +  V RK  
Sbjct: 229 TKLGNSEVKGLVEQMVNDQLASFLEENPPVAKKVVAKVGDACRARIAARKARETVRRKGV 288

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC       +EL+IVEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A 
Sbjct: 289 LDGGGLPGKLADCQSRDPQESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKAR 348

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREE 531
            EK+  + +I+ L+ ALG    ++  + 
Sbjct: 349 FEKMLTSAEIVTLITALGTGIGAEDYDP 376


>gi|317420228|emb|CBW30271.1| gyrase subunit B [Psychrobacter arcticus]
          Length = 382

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 137/393 (34%), Positives = 213/393 (54%), Gaps = 17/393 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS +L + + R+     Q ++ G+P S +++ E   ++ GT+I F 
Sbjct: 1   SGGLHGVGVSVVNALSKKLEMNIWREGYHHHQTYTDGVPDSDIQQMEAT-DQTGTQIRFY 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P   +F     F+   L K  +  ++L+  V+   + ++       I ++ EF   GGL 
Sbjct: 60  PSNDVFTGTI-FEYDILAKRLRELSFLNSGVRIVLTDER-------IDKRHEFEHKGGLS 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            ++      +  I+        ++ G    +VE A+ W +    ++  + N I   +GGT
Sbjct: 112 EFVSYINAGKDGINDVFHFISNQEDGI---SVEVALQWTDTYNEKVFCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H SG R ALTR +  Y +      K  +    DD       I+SV + +P+F+ QTK KL
Sbjct: 169 HLSGFRSALTRCLNTYMDRENLFKKEKVVATGDDAREGLTAIVSVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRK 446
           VS + +  VE+A+ D F+ YL +NP     +   +I+ +  R   RK      RKT +  
Sbjct: 229 VSSEVKSAVESAMHDKFNDYLQENPSAGKLIAGKIIDAARARDAARKAREMTRRKTTLDI 288

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ R+R  QA+ PL+GKILNV  A  +K
Sbjct: 289 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRSRKTQAIFPLKGKILNVERARFDK 348

Query: 507 IRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
           + ++Q++ +L+ ALGC     +Y  + +RY K+
Sbjct: 349 MLSSQEVGNLITALGCGIGPDEYNPDKVRYHKI 381


>gi|259018108|gb|ACV89646.1| DNA gyrase subunit B [Nocardia transvalensis]
          Length = 414

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 130/420 (30%), Positives = 209/420 (49%), Gaps = 33/420 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L   +      ++Q++    P      +     + G
Sbjct: 1   SESYAVSGGLHGVGISVVNALSTRLQADIDYGGYHWTQEYKDAKPGKL--VQGDPTKRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA---------EKY 255
           T I F  DP IF     ++   + +  Q  A+L+  +    +  +            E  
Sbjct: 59  TTIRFWADPNIFETTY-YNFETVSRRLQEMAFLNKGLTITLTDQRVSDSEITEEVVSETA 117

Query: 256 GIPEKE--------------EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
             P+ E               +++PGGL+ +++     +  I + +    ++  G     
Sbjct: 118 EAPKHEGEAATVTEQKVKTRTYHYPGGLEDFVKHINRTKQAIHNTVVGFTSKGTGH---E 174

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISII 358
           +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +   ++  ++ 
Sbjct: 175 LEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLIKEKDGNLT 234

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+      I+SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  +
Sbjct: 235 GDDIREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRTCNENLAHWFEANPADAKTI 294

Query: 419 LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           ++  +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGS
Sbjct: 295 VQKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPRLSEIYIVEGDSAGGS 354

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  R+   QA+LP+RGKI+NV  +  +K+  N ++  ++ A G     ++    LRY K
Sbjct: 355 AKSGRDSMYQAILPIRGKIINVEKSRIDKVLKNNEVQSIITAFGTGIHDEFDISKLRYHK 414


>gi|310831315|ref|YP_003969958.1| putative DNA topoisomerase IIA precursor [Cafeteria roenbergensis
            virus BV-PW1]
 gi|309386499|gb|ADO67359.1| putative DNA topoisomerase IIA precursor [Cafeteria roenbergensis
            virus BV-PW1]
          Length = 1488

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 114/602 (18%), Positives = 223/602 (37%), Gaps = 78/602 (12%)

Query: 100  SLDGNGFLTVVDNGRG----IPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
             LD  G++TV  +G G    I V+      N+  L    T  H                 
Sbjct: 487  ILDSPGYITVEKDGIGDYVSITVD---TTTNQRFLINDFTVTH----------------- 526

Query: 156  GVGISVVNALSDELH--VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
                +  N  S +    V        F Q +   + +    K      K   ++T  PD 
Sbjct: 527  ----NCSNVWSKKFEIEVQDKTNKKHFHQIWEDNMSVVNKPKVTSKSTKSFVKVTCYPDL 582

Query: 214  KIFGDKA-GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            + F  K+         K     A  + +VK  ++      +         F         
Sbjct: 583  ERFKIKSLKKHLPLFEKRAYDLALTTEKVKVKFNGSLINVKNMQDFMDLYF------PDT 636

Query: 273  LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHES 332
             +    +   +                          +   E  SY N I +  GGTH +
Sbjct: 637  AKIVDTSNPRMHVGCIYL------------------PDVGHESISYVNGICSYRGGTHCN 678

Query: 333  GLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
             +   + + +     + +  + I I    +  + V  ++  I  P F+ Q+K  L +   
Sbjct: 679  YIVDMVVKSLIN-DYIKKKDKDIKISPALIKDNLVFFINSVIDNPSFSSQSKETLTTKP- 736

Query: 393  QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
                 +       +      +  + +++ +I  ++ +   +  +   RKT + +     +
Sbjct: 737  ----SDFGTVYKLNKTFMTKLSKSGIIKQIISLAKFKESVKMTKTDGRKTTVIRGIPKLE 792

Query: 453  LAD-CSQNIAHGTELFIVEGDSAGGSAKQ---ARNRSNQAVLPLRGKILNVASAGSEKIR 508
             A+      AH   L++ EGDSA         +++R+     PL+GK+LNV  A  ++I 
Sbjct: 793  DANKAGTKDAHKCGLYLAEGDSALSMILSGLSSKDRNFYGAFPLKGKLLNVREASVKQIM 852

Query: 509  NNQQIMDLVQALGCRTRSQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
             N +I +L + LG R   +Y  ++    LRY KVII+ D+DVDG+HI  L+L  F+    
Sbjct: 853  GNDEISNLKKILGLRNEFKYEMDEEFNTLRYGKVIILCDSDVDGSHIKGLILNMFHSMWP 912

Query: 565  DLIEQ-KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
            +L+++   +  ++ P+ + T+G + +  ++         +   +      I  +KGLG  
Sbjct: 913  NLLKREGFITTMNTPIVKATKGKEILKFYNLTDYDNWRND---NNTKGYYIKYYKGLGTS 969

Query: 624  LASQLKETAMDANKRTLLRVEINKDLNSLK---DTQDSINKLMGTK-ADERFKFIQERAS 679
             + + KE   D    +L+    + + +  K    + D+I      + AD+R +++     
Sbjct: 970  DSKEAKEYFQDIEG-SLIDYTWDTNKSKTKGKTVSDDAIELAFSKELADKRKEWLINYDK 1028

Query: 680  FI 681
             +
Sbjct: 1029 NL 1030



 Score =  116 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 66/163 (40%), Gaps = 28/163 (17%)

Query: 45  DASSIRILEGLEPVRMRPGMYIGGTD---------------------EKALHHLFSEVID 83
             +    +   E + +RPGMYIG                           L+ ++ E+I 
Sbjct: 2   SKTKYDKVSQREHILLRPGMYIGSVSKNTEPMWLYEDNKMQKKDITFIPGLYKIYDEIIV 61

Query: 84  NAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGR-GIPVENHPKFPNKSTLEIILTTLHAG 140
           NA D  I     N IE+ ++ + G+ +V +NG  GIPV+ H +        +I   L   
Sbjct: 62  NARDHSINDKSCNSIEIEVNTDEGYFSVYNNGDEGIPVKEH-ETHKTLIPSMIFGELLTS 120

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183
             +D+S    +GG++G+G   +   S + +V +         K
Sbjct: 121 SNYDDSKKRTTGGMNGLGSKCI---SSDTNVLIWNSKISKKAK 160


>gi|283132391|dbj|BAI63601.1| DNA gyrase subunit B [Leptospira inadai]
          Length = 391

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 137/397 (34%), Positives = 217/397 (54%), Gaps = 11/397 (2%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS+ L V V ++  I++QK+ +GIP+SP+E K      RGT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSEYLEVEVHQRGKIYTQKYEKGIPVSPVEIKGDSSE-RGTIV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PD  IF     F    L    +  A+L+  +       +  +E   +   E F F G
Sbjct: 60  RFKPDATIFTTV-DFQFDILSARFRELAFLNKGLVLIIEDCRRGSEGENLLRNE-FQFSG 117

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEG 327
           G+ ++++   EN+  +   I   + +       +++++  + E    I  + N I  + G
Sbjct: 118 GIVSFVEHINENKHPMHKVIHFERNKDDVLAEISIQYSETYTEN---IFCFTNNINNNLG 174

Query: 328 GTHESGLRVALTRGIKKYAELT---QNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GTH  G R ALTR +  + +       K    +  +D+      ++S+ I +P+F  QTK
Sbjct: 175 GTHLEGFRAALTRTLNDFLKKDTTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTK 234

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
            KLV+ + +  ++    +    +  +NP    K+LE  I  ++ R   RK R+   RKT 
Sbjct: 235 EKLVNAEIKGIMQTLSSEGLTLFFEENPGITKKILEKCILSAKAREAARKARDLTRRKTV 294

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADCS+     +EL++VEGDSAGGSAKQ R+R+ QA+LPL+GKILNV  A 
Sbjct: 295 LEGGGLPGKLADCSEKDPAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKAR 354

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            +KI ++++I  LV ALG       +  + +RY K++
Sbjct: 355 LDKILSSEEIRVLVSALGTGIGEDGFNIDKIRYHKIM 391


>gi|148611302|gb|ABQ95839.1| DNA gyrase subunit B [Acidiphilium sp. XTS1]
          Length = 400

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 136/407 (33%), Positives = 215/407 (52%), Gaps = 15/407 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D ++Y++SGGLHGVG +VVNALS+ + V + R       +F  G  ++PL       +  
Sbjct: 1   DQNSYKVSGGLHGVGAAVVNALSEWMEVRIWRDGKEHLIRFENGDTVAPLAVVGPSDHAT 60

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT +TFRP    F     FD A   +  +  A+L+  +      ++  A      ++  F
Sbjct: 61  GTSVTFRPSAATFTR-TEFDFAIYERRLRELAFLNSGLTIDLRDERHSAV-----QEAHF 114

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GGL  ++      ++ + S       +        VE+A+AW +     +  + N I
Sbjct: 115 RYEGGLVEFVSWLDRAKTQLFSSPIAA-FKDDTQGGIKVEFALAWNDTYHETMLCFTNNI 173

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
           +  +GGTH +G R ALTR + KYAE    K ++S+  +D+      +LSV + +P+F+ Q
Sbjct: 174 VQRDGGTHLAGFRSALTRVVSKYAESLGKKDSLSLSGEDMREGLTAVLSVKVPDPKFSSQ 233

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK KLVS + Q  V+ A+ D  +H+   +P E   + + V++ +  R   R+ RE+ R+ 
Sbjct: 234 TKDKLVSSEVQPLVQAAVADALEHWFETHPKEGKLIAQKVMDAASAREAARRARELTRRK 293

Query: 443 A-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC +     +E+FIVEG SAGGSAKQ R+R  QA+LPL+GKILNV  
Sbjct: 294 GVLDISTLPGKLADCQERDPAKSEIFIVEGGSAGGSAKQGRDRKTQAILPLKGKILNVER 353

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQ------YREEDLRYEKVIIMT 542
           A  +++  + +I  L+ ALG            +    LRY +++IMT
Sbjct: 354 ARFDRMLGSAEIGTLITALGTGIGPAEPEQGGFDISKLRYHRIVIMT 400


>gi|51571581|emb|CAH18957.1| gyrase B [Corallococcus coralloides]
          Length = 374

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 133/383 (34%), Positives = 201/383 (52%), Gaps = 16/383 (4%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y +SGGLHGVG++ VN LS+   V + R   +  Q ++RG+  SP  +     +KRGT
Sbjct: 1   GAYXVSGGLHGVGVTCVNFLSEWFKVRIQRNGKVXEQGYARGVANSPPTEVG-TTDKRGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            I F+PDP I      F+   L +  +  A+L+  +      ++   E         F F
Sbjct: 60  MIHFKPDPTIMETA-DFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD-------FKF 111

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG+ ++++   + +  +  +    K+E++G    ++E A+ W +     I ++ N I T
Sbjct: 112 DGGIASFVEYLNKAKEALHDKPVFIKSEREGV---SLEIAMQWNDGYDERIFTFANNINT 168

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQ 382
            EGG+H SG + ALTR +  YAE     + +      +D       ++SV +  P+F GQ
Sbjct: 169 HEGGSHLSGFKAALTRTLNSYAEKGGAWKDLKETPTGEDAREGLSAVISVNVSNPQFEGQ 228

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRK 441
           TKTKL + + +  VE  + D    +L +NP  A K++  V          R+ +  V RK
Sbjct: 229 TKTKLGNSEVKGLVEQMVNDQLASFLEENPPVAKKVVAKVGDACRARIAARKARETVRRK 288

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC       +EL+IVEGDSAGGSAKQ R+R NQA+LPLRGKILNV  
Sbjct: 289 GVLDGGGLPGKLADCQSRDPQESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEK 348

Query: 502 AGSEKIRNNQQIMDLVQALGCRT 524
           A  EK+  + +I+ L+ ALG   
Sbjct: 349 ARFEKMLTSAEIVTLITALGTGI 371


>gi|238477932|gb|ACR43659.1| DNA gyrase subunit B [Aeromonas jandaei]
 gi|269849463|gb|ACZ49800.1| DNA gyrase subunit B [Aeromonas jandaei]
          Length = 374

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 143/386 (37%), Positives = 213/386 (55%), Gaps = 16/386 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P P IF D   F    L K  +  ++L+  V      +++  E         F + GG+K
Sbjct: 60  PSPTIFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIK 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGT
Sbjct: 112 AFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R ALTR +  Y E      K   +   DD+    + ++SV + +P+F+ QTK KL
Sbjct: 169 HLVGFRTALTRTLNSYMEKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
           VS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+  
Sbjct: 229 VSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDI 288

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 289 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 348

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED 532
           + ++Q++  L+ ALGC         D
Sbjct: 349 MISSQEVGTLITALGCGIGRDEYNPD 374


>gi|148470254|gb|ABQ66074.1| gyrase b [uncultured bacterium]
          Length = 432

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 159/431 (36%), Positives = 221/431 (51%), Gaps = 23/431 (5%)

Query: 136 TLHAGGKFDNST----YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191
            LHAGGKFD  +    Y  SGGLHGVG+SV NALS  L VTV R+  +    F  G  + 
Sbjct: 6   VLHAGGKFDKKSGQGAYAFSGGLHGVGVSVTNALSRRLEVTVKREGKVHFMTFGDGFVIE 65

Query: 192 PLEKKEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           PL  +        GTR+   PDP+ F +           +      LSG         + 
Sbjct: 66  PLAVQGTCGARNTGTRVRVWPDPRYFDEPQINLIELERGLRSKAVLLSGVSV------RL 119

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS----EIFTGKTEKKGTHRGT-VEWA 305
             E  G   ++ +++PGGL+ YL  +L    L+      + F G  E      G    WA
Sbjct: 120 RKEGDGRTLEQTWHYPGGLEQYLTERLGEDPLLIPVFTGDRFFGVEEGDSFAPGEGASWA 179

Query: 306 IAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLM 363
            +W E       S+ N I T  GGTHE+GLR  L   +K + E      R + +  +D+ 
Sbjct: 180 FSWHETRSLQGESFVNLIPTPLGGTHEAGLRTGLFEALKSFIEHHGLLPRGVRLQLEDVS 239

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                ILS+ + +P+F GQTK KL S +A + V   +RDPF+H+L Q+      L + VI
Sbjct: 240 ARLQFILSIRMLDPQFQGQTKDKLTSREALKLVSTLVRDPFEHWLNQHVEHGKALADLVI 299

Query: 424 ERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483
            ++  R++  ++ E  + + +  L  PGKL DC        ELF+VEGDSAGGSAK ARN
Sbjct: 300 RQAMARMKSGQKIEKRKSSGVAVL--PGKLTDCESERIDERELFLVEGDSAGGSAKMARN 357

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL---RYEKVII 540
           +  QA+LPLRGK+LN       ++  N +I D+  ALG     +    DL   RY+++II
Sbjct: 358 KLTQAILPLRGKVLNSFEVEQGRLFANTEIHDIAVALGIDPHGRGEPVDLSQRRYDRIII 417

Query: 541 MTDADVDGAHI 551
           MTDADVDG+HI
Sbjct: 418 MTDADVDGSHI 428


>gi|269849461|gb|ACZ49799.1| DNA gyrase subunit B [Aeromonas veronii]
 gi|291192922|gb|ADD83436.1| DNA gyrase subunit B [Aeromonas veronii]
 gi|291192930|gb|ADD83440.1| DNA gyrase subunit B [Aeromonas veronii]
          Length = 374

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 142/386 (36%), Positives = 213/386 (55%), Gaps = 16/386 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P P IF D   F    L K  +  ++L+  V      +++  E         F + GG+K
Sbjct: 60  PSPTIFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIK 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGT
Sbjct: 112 AFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KL
Sbjct: 169 HLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
           VS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+  
Sbjct: 229 VSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDI 288

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 289 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 348

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED 532
           + ++Q++  L+ ALGC         D
Sbjct: 349 MISSQEVGTLITALGCGIGRDEYNPD 374


>gi|308153152|dbj|BAJ22165.1| DNA gyrase subunit B [Mycobacterium peregrinum]
          Length = 419

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 124/424 (29%), Positives = 204/424 (48%), Gaps = 35/424 (8%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y++SGGLHGVG+SVVNALS  L   + +    + Q +   +P +  +  +  +     
Sbjct: 2   GAYQVSGGLHGVGVSVVNALSTRLEADIYKDGYEWFQTYDNSVPGTLKQGDKTTKTGTTI 61

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK----------- 254
           R    P+     +   +D   + +  Q  A+L+  +    + ++   E+           
Sbjct: 62  RFWADPN---VFETTVYDFETIARRLQEMAFLNKGLTIELTDERVSREEVVDEVVADTAA 118

Query: 255 --------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                             +   F++PGGL  +++     ++ I   +     +  G    
Sbjct: 119 APKSAEETAAEAAAPHKVKHRTFHYPGGLVDFVKHINRTKTAIQPSVIDFDGKGPGH--- 175

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISI 357
            VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +     +  ++
Sbjct: 176 EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRSALTTVVNKYAKDKKLLKDKDPNL 235

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP EA  
Sbjct: 236 TGDDIREGLAAVISVKVAQPQFEGQTKTKLGNTEVKSFVQKICNEQLTHWFEANPAEAKT 295

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGG
Sbjct: 296 VVNKAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPTKSELYVVEGDSAGG 355

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY 
Sbjct: 356 SAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDISKLRYH 415

Query: 537 KVII 540
           K+++
Sbjct: 416 KIVL 419


>gi|6644325|gb|AAF21010.1|AF208259_1 DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 384

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 142/386 (36%), Positives = 213/386 (55%), Gaps = 16/386 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P P IF D   F    L K  +  ++L+  V      +++  E         F + GG+K
Sbjct: 60  PSPTIFSDTL-FHYEILAKRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIK 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGT
Sbjct: 112 AFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KL
Sbjct: 169 HLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
           VS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+  
Sbjct: 229 VSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDI 288

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 289 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 348

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED 532
           + ++Q++  L+ ALGC         D
Sbjct: 349 MISSQEVGTLITALGCGIGRDEYNPD 374


>gi|308152467|dbj|BAJ22212.1| DNA gyrase subunit B [Dietzia sp. Y3]
          Length = 445

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 138/451 (30%), Positives = 215/451 (47%), Gaps = 61/451 (13%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  + V + R   ++ Q F+  +P   ++         G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRVEVQIKRDGRLWQQDFNMAVPEELVDA--GPAEGTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI------- 257
           TR+ F  D  IF     +D   + +  Q  A+L+  +    +  +  AE+          
Sbjct: 59  TRVRFWADASIFEST-EYDFDVVARRLQEMAFLNKGLTITLTDRRSRAEQAAELDAIADS 117

Query: 258 --------------------------------------------PEKEEFYFPGGLKTYL 273
                                                         K  F++P GLK Y+
Sbjct: 118 EGRGSDSAPGSDEGSDIEHAVDAERAFVEGAVETTEPAEPVKVRERKRTFHYPDGLKDYV 177

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
               ++++ I   I   + +  G     VE A+ W       + ++ NTI T EGGTHE 
Sbjct: 178 TAINKSKTAIHQTILYFEGKGTGH---EVEVAMQWNSGYSESVHTFANTINTHEGGTHEE 234

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALT  + KYA   +   ++  ++  DD+      ++S  I +P+F GQTKTKL + 
Sbjct: 235 GFRAALTGLVNKYARDKKLLKEKDPNLTGDDIREGLAAVISAKISDPQFEGQTKTKLGNT 294

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRL 449
           + +  ++  + +   H+   NP EA  ++   I  S+ R+  RK RE+  RK+A     L
Sbjct: 295 EVKGFIQRQVSEHVGHWFEANPAEARVIVNKGIASSQARVAARKAREMVRRKSATDIGGL 354

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC       +EL+IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  +  +K+  
Sbjct: 355 PGKLADCRSKDPAKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKSRIDKVLK 414

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           N ++  ++ ALG     ++  + LRY K+++
Sbjct: 415 NTEVQAIITALGTGIHEEFDLDKLRYHKIVL 445


>gi|19909761|dbj|BAB87076.1| DNA gyrase subunit B [Rhodomicrobium vannielii ATCC 17100]
          Length = 392

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 152/401 (37%), Positives = 220/401 (54%), Gaps = 14/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS  L +T+ R        F+ G+P+ PL+      + RG
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSTRLELTIWRSGHEHFMAFADGVPVEPLKIVGPAPDLRG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           TR+TF P P  F     FD A L    +  A+L+  V    +  +        P K EF 
Sbjct: 61  TRVTFTPSPATF-TMVDFDYATLEFRLRELAFLNSGVYIRLNDLR-----GVEPVKSEFK 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GGLK +++     R+ +       + +++G     VE A+ W +   E    + N I 
Sbjct: 115 YEGGLKAFVEYLDRARTPLFPVPVFVRADREGV---AVEAALWWNDGYHENVLCFTNNIP 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR I  YA  T    +  + +  DD       +LSV + +P+F+ 
Sbjct: 172 QRDGGTHLAGFRAALTRTINTYAAATGVAKREKVQLTGDDAREGLTCVLSVKVADPKFSS 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK KLVS + +  VE+ + D    +  ++P+E   +L  V E +  R   RK RE+ R+
Sbjct: 232 QTKDKLVSSEVRPAVESIMTDILGTWFEEHPVEGKLILLKVAEAAAAREAARKARELTRR 291

Query: 442 TA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
              +    LPGKLADC +     +E+F+VEGDSAGGSAKQ R+RSNQAVLPLRGKILNV 
Sbjct: 292 KGVLDVANLPGKLADCQERDPAKSEVFLVEGDSAGGSAKQGRDRSNQAVLPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q+I  L+ ALG    R  +    LRY ++II
Sbjct: 352 RARFDKMLSSQEIGTLITALGTGIGRDDFDIAKLRYHRIII 392


>gi|116488843|gb|ABJ98772.1| DNA gyrase B [Ruegeria atlantica]
          Length = 382

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 129/388 (33%), Positives = 200/388 (51%), Gaps = 13/388 (3%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS+ L + V R       +F  G  +  L+   +  ++ GT + 
Sbjct: 1   QVSGGLHGVGVSVVNALSNWLELRVWRNGKEHVARFEGGETVEHLKVVAECGDRTGTEVR 60

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F      F +   +    L K  +  A+L+  V+     ++          + E ++ GG
Sbjct: 61  FLASLDTFSN-LEYSFETLEKRLRELAFLNSGVRIILIDER-----PAERLETELFYEGG 114

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           +K +++    +++    E    K E+       VE A+ W +     +  + N I   +G
Sbjct: 115 VKEFVKYLDRSKTSAMPEPIYIKGERDDI---GVEIAMWWNDSYHETVLPFTNNIPQRDG 171

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH +G R ALTR I  YA+ +    K  +S   DD       +LSV + +P+F+ QTK 
Sbjct: 172 GTHIAGFRGALTRTINNYAQTSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKD 231

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444
           KLVS + +  VE  + +    +  +NP  A  ++  +IE +  R   RK RE   RKTA+
Sbjct: 232 KLVSSEVRPAVEGLMNEKLAEWFEENPNVAKIIVGKIIEAALAREAARKARELTRRKTAM 291

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               L GKL DCS+     TE+F+VEGDSAGGSA+  R+R  QA+LPL+GKILNV  A  
Sbjct: 292 DVNFLAGKLKDCSEKDPTKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARF 351

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREED 532
           +++ ++Q+I +LV ALG          +
Sbjct: 352 DRMLSSQEIGNLVMALGTGIGRDEFNIE 379


>gi|62288325|gb|AAX78438.1| DNA gyrase subunit beta [Aeromonas hydrophila subsp.
           decolorationis]
          Length = 376

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 142/386 (36%), Positives = 213/386 (55%), Gaps = 16/386 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P P IF D   F    L K  +  ++L+  V      +++  E         F + GG+K
Sbjct: 60  PSPTIFSDTL-FHYEILAKRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIK 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGT
Sbjct: 112 AFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KL
Sbjct: 169 HLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
           VS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+  
Sbjct: 229 VSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDI 288

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 289 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 348

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED 532
           + ++Q++  L+ ALGC         D
Sbjct: 349 MISSQEVGTLITALGCGIGRDEYNPD 374


>gi|281486939|gb|ADA71017.1| DNA gyrase subunit B [Aeromonas hydrophila]
          Length = 374

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 142/386 (36%), Positives = 213/386 (55%), Gaps = 16/386 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P P IF D   F    L K  +  ++L+  V      +++  E         F + GG+K
Sbjct: 60  PSPTIFSDTL-FHYEILAKRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIK 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGT
Sbjct: 112 AFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KL
Sbjct: 169 HLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
           VS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+  
Sbjct: 229 VSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDI 288

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 289 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 348

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED 532
           + ++Q++  L+ ALGC         D
Sbjct: 349 MISSQEVGTLITALGCGIGRDEYNPD 374


>gi|281486955|gb|ADA71025.1| DNA gyrase subunit B [Aeromonas popoffii]
          Length = 375

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 139/386 (36%), Positives = 213/386 (55%), Gaps = 15/386 (3%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++     +  GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFW 60

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P P IF D   +    L K  +  ++L+  V      +++  E         F + GG+K
Sbjct: 61  PSPTIFTDTL-YHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------VHFCYEGGIK 112

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I  ++F    E+ G     VE A+ W +     +  + N I   +GGT
Sbjct: 113 AFVEYLNQNKTPIYPKVFHFSIEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGT 169

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KL
Sbjct: 170 HLVGFRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKL 229

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
           VS + +  VE A+ +    +L++NP +A  ++  +++ +  R   RK RE   RK A+  
Sbjct: 230 VSSEVKTAVEQAMGEKLGEFLLENPGDAKIVVNKIVDAARAREAARKARELTRRKGALDI 289

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 290 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 349

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED 532
           + ++Q++  L+ ALGC         D
Sbjct: 350 MISSQEVGTLITALGCGIGRDEYNPD 375


>gi|313574625|emb|CBX26165.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574627|emb|CBX26166.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
          Length = 392

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 138/401 (34%), Positives = 210/401 (52%), Gaps = 14/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS  L + + R   +    F+ G+  +PL    +   + G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGRSG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF   P+ F     +D   L    +  A+L+  V+   +  +    K          
Sbjct: 61  TEVTFLASPQTFT-MTEYDYGTLEHRLRELAFLNSGVRILLTDKRHSDVKQQE-----LL 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GGL+ +++     +  +  +     +EK G    TVE A+ W +   E    + N I 
Sbjct: 115 YDGGLEAFVRYLDRAKKPLVDKPIAIHSEKDGI---TVEVALWWNDSYHENVLCFTNNIP 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  YA+ +   +   +    +D       ILSV + +P+F+ 
Sbjct: 172 QRDGGTHMAGFRAALTRQVTSYADTSGIMKREKVSLQGEDCREGLTAILSVKVPDPKFSS 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNR 440
           QTK KLVS + +  VE+ + +    +L ++P EA  L+ + V         R+ +    R
Sbjct: 232 QTKDKLVSSEVRPVVESLVNEALSTWLEEHPSEAKILIGKVVEAAVAREAARKARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADCS+     +ELF+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 292 KGALDIASLPGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVII 540
            A  +K+ ++Q+I  L+ ALG          + LRY K+II
Sbjct: 352 RARFDKMLSSQEIGTLITALGTSIGKDEFNADKLRYHKIII 392


>gi|254973567|gb|ACT98612.1| gyrase B [Alishewanella jeotgali]
          Length = 379

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 137/390 (35%), Positives = 215/390 (55%), Gaps = 15/390 (3%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALSD L +T+ R+  + SQ +  G+P +PL    +     GT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSDVLELTIRRKGQVHSQIYHLGVPQAPLAVIGETEG-SGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            I F P P IF D   F    L K  +  ++L+  V    + ++         + + F +
Sbjct: 60  AIRFWPSPTIFSDIN-FHYDILAKRLRELSFLNSGVSIILTDER-------TDKTDHFKY 111

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG++ ++Q    +++ I  + F    +++      VE A+ W +     +  + N I  
Sbjct: 112 DGGIEAFVQYLNRSKTSIHPKAFYFTDQRED--GIAVEVAMQWNDSYQENVFCFTNNIPQ 169

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTR +  Y +      K  +    DD       ++SV + +P+F+ Q
Sbjct: 170 RDGGTHLAGFRGALTRVLNTYIDQEGYAKKMKVQASGDDAREGLTAVISVKVPDPKFSSQ 229

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRK 441
           TK KLVS + +  VE+ + +  + YL++NP +A  ++  +++ +  R   RK R    RK
Sbjct: 230 TKDKLVSSEVRSAVESVMAEKLNEYLLENPGDAKIIVGKIVDAARAREAARKAREMTRRK 289

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  
Sbjct: 290 GALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 349

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREE 531
           A  +K+ ++Q++  L+ ALGC    +    
Sbjct: 350 ARFDKMLSSQEVGTLITALGCGIGREEYNP 379


>gi|62085686|gb|AAX63235.1| DNA gyrase subunit B [Gordonia rubripertincta]
          Length = 424

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 135/429 (31%), Positives = 209/429 (48%), Gaps = 38/429 (8%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+  Y +SGGLHGVGISVVNALS ++ + +      + Q +S   P    +     
Sbjct: 1   GGKFDSDAYAVSGGLHGVGISVVNALSTKVELEIENDGFHWEQTYSYAKPGPLEK--GDA 58

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG--- 256
             K GT + F PDP IF +   F+A  + +  Q  A+L+  +    +  +  A +     
Sbjct: 59  TRKTGTTVRFWPDPDIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEPPGDA 118

Query: 257 --------------------------IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
                                      P+   +++P GL  Y++     +  I + +   
Sbjct: 119 NGDEDAPATDVAEAVQTETEKAAAATKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGF 178

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             + +G     VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   
Sbjct: 179 SAKGEGH---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEK 235

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
           +   ++   +  DD+      ++S  + +P+F GQTKTKL + + +  V+    +   H+
Sbjct: 236 KLIKEKDGKLTGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHW 295

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
              NP EA  +++   + ++ R+  R+    V RKTA     LPGKLADC  N     E+
Sbjct: 296 FEANPAEAKIIVKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEV 355

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS 526
           +IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     
Sbjct: 356 YIVEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHD 415

Query: 527 QYREEDLRY 535
           ++    LRY
Sbjct: 416 EFDIAKLRY 424


>gi|223983624|ref|ZP_03633802.1| hypothetical protein HOLDEFILI_01083 [Holdemania filiformis DSM
           12042]
 gi|223964391|gb|EEF68725.1| hypothetical protein HOLDEFILI_01083 [Holdemania filiformis DSM
           12042]
          Length = 231

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 101/231 (43%), Positives = 145/231 (62%), Gaps = 1/231 (0%)

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
           +      I+SV   +P++ GQTKTKL + + ++ V N L +  + +L++NP  A  ++E 
Sbjct: 1   MREGLTAIISVKHPDPQYEGQTKTKLGNAEVRKIVSNILGEQLERFLMENPNSAKLIIEK 60

Query: 422 VIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
               S+ RL  +K RE   RK+A+    LPGKLADCS   A   E+++VEGDSAGGSAKQ
Sbjct: 61  AQLASKARLAAKKARELTRRKSALEISALPGKLADCSSKNAEICEIYLVEGDSAGGSAKQ 120

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            RN   QA+LPLRGKILNV  A   +I +N +I  ++ A G     +     LRY K++I
Sbjct: 121 GRNSKFQAILPLRGKILNVEKARLHRIFDNNEIRSMITAFGAGVGEEVDVTKLRYHKIVI 180

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYA 591
           MTDADVDGAHI +LLLTF Y+ +  ++E   +++  PPL++I +G +  YA
Sbjct: 181 MTDADVDGAHIRTLLLTFLYRYLRPVVEGGFVYIAQPPLYKIQKGQQVRYA 231


>gi|3021640|dbj|BAA25340.1| DNA gyrase B subunit [Pseudomonas putida]
          Length = 382

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 141/393 (35%), Positives = 216/393 (54%), Gaps = 16/393 (4%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS++L +TV R   I+ Q +  G+P +P+    +     GT I F+P
Sbjct: 1   GGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGE-SETTGTHIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SAETFKNIH-FSWDILAKRIRELSFLNSGVGILLKDERSGKE-------EFFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++S++F    +++      VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTPVNSQVFHFSVQRED--GVGVEVALQWNDSFNENLLCFTNNIPQRDGGTH 169

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R +LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 170 LVGFRSSLTRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 229

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+   
Sbjct: 230 SSEVKTAVEQEMNKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIA 289

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+
Sbjct: 290 GLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKM 349

Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 350 ISSQEVGTLITALGCGIGREEYNIDKLRYHNII 382


>gi|12644444|sp|Q44271|GYRB_ACIG6 RecName: Full=DNA gyrase subunit B
 gi|11270910|pir||T43900 DNA gyrase chain B [imported] - Acinetobacter sp. (fragment)
 gi|4514411|dbj|BAA75404.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 388

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 141/400 (35%), Positives = 217/400 (54%), Gaps = 17/400 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +LH+ + R      Q++  G    PL+   +  +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSKKLHLIIHRAGQTHEQEYCHGDSQYPLKVIGET-DKSG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I F P  ++   +  F    L +  +  ++L+  V+     ++   E         + 
Sbjct: 60  TVIRFWPS-ELTFSQTIFSVEILARRLRELSFLNAGVRIVLRDERVNFE-------HVYD 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   E ++ ++           G     VE A+ W E     +  + N I 
Sbjct: 112 YEGGLSEFVKYINEGKTHLNEIFHFTTDTDSGI---AVEVALQWNESYQENVRCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+ +Y E      K  +++  DD       I+SV + +P+F+ 
Sbjct: 169 QKDGGTHLAGFRAALTRGLNQYLESENILKKEKVAVTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNR 440
           QTK KLVS + +  VE A+   F  YL++NP  A  +   +I+ +  R   RK      R
Sbjct: 229 QTKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV 
Sbjct: 289 KSALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY K+I
Sbjct: 349 RARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKII 388


>gi|133778466|dbj|BAF49239.1| DNA gyrase B subunit [Leptospira kirschneri serovar Grippotyphosa]
 gi|133778468|dbj|BAF49240.1| DNA gyrase B subunit [Leptospira kirschneri serovar Ratnapura]
 gi|133778474|dbj|BAF49243.1| DNA gyrase B subunit [Leptospira kirschneri serovar Ndahambukuje]
          Length = 389

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 132/397 (33%), Positives = 215/397 (54%), Gaps = 13/397 (3%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS+ L V V ++  +++QK+ +G+P+S ++ +      RGT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSEYLEVEVHQKGKVYTQKYEKGVPVSSVQIQGDSSE-RGTIV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PD  IF     F    L    +  A+L+  +       +   E     E   F F G
Sbjct: 60  RFKPDATIFTTV-DFQFDVLSARFRELAFLNKGLVLVVEDHRRGKENILRNE---FQFSG 115

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEG 327
           G+ ++++   EN+  +   I   + +       +++++  + E    I  + N I  + G
Sbjct: 116 GIVSFVEHINENKHPMHKVIHFERNKDDVLAEISIQYSETYTEN---IFCFTNNINNNLG 172

Query: 328 GTHESGLRVALTRGIKKYAELTQ---NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GTH  G R ALTR +  + +       K    +  +D+      ++S+ I +P+F  QTK
Sbjct: 173 GTHLEGFRAALTRTLNDFLKKDSALSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTK 232

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
            KLV+ + +  ++    +    +  +NP    K+LE  I  ++ R   RK R+   RKT 
Sbjct: 233 EKLVNAEIKGIMQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTV 292

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADCS+     +EL++VEGDSAGGSAKQ R+R+ QA+LPL+GKILNV  A 
Sbjct: 293 LEGGGLPGKLADCSEKDPAHSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKAR 352

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            +KI ++++I  LV ALG      ++  + +RY K++
Sbjct: 353 LDKILSSEEIRVLVSALGTGIGEDEFNVDKIRYHKIM 389


>gi|308152509|dbj|BAJ22233.1| DNA gyrase subunit B [Mycobacterium porcinum]
          Length = 419

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 123/424 (29%), Positives = 204/424 (48%), Gaps = 35/424 (8%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y++SGGLHGVG+SVVNALS  L   + +    + Q +   +P +  +  +  +     
Sbjct: 2   GAYQVSGGLHGVGVSVVNALSTRLEADIYKDGYEWFQTYDNSVPGTLKQGDKTTKTGTTI 61

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK----------- 254
           R    P+     +   +D   + +  Q  A+L+  +    + ++   ++           
Sbjct: 62  RFWADPN---VFETTVYDFETIARRLQEMAFLNKGLTIELTDERVTQDEVVDEVVADTAA 118

Query: 255 --------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                             +   F++PGGL  +++     ++ I   +     +  G    
Sbjct: 119 APKTAEETAAEASAPHKVKHRTFHYPGGLVDFVKHINRTKTAIQPSVIDFDGKGPGH--- 175

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISI 357
            VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +     +  ++
Sbjct: 176 EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRSALTTVVNKYAKDKKLLKDKDPNL 235

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP EA  
Sbjct: 236 TGDDIREGLAAVISVKVAQPQFEGQTKTKLGNTEVKSFVQKICNEQLTHWFEANPAEAKT 295

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGG
Sbjct: 296 VVNKAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPTKSELYVVEGDSAGG 355

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY 
Sbjct: 356 SAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDISKLRYH 415

Query: 537 KVII 540
           K+++
Sbjct: 416 KIVL 419


>gi|3021630|dbj|BAA25335.1| DNA gyrase B subunit [Pseudomonas putida]
          Length = 382

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 141/393 (35%), Positives = 214/393 (54%), Gaps = 16/393 (4%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS++L +TV R   I+ Q +  G+P +P+          GT I F+P
Sbjct: 1   GGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGD-SETTGTHIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SAETFKNIH-FSWDILAKRIRELSFLNSGVGILLKDERSGKE-------EFFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++S++F    ++       VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTPVNSQVFHFNVQRDD--GVGVEVALQWNDSFNENLLCFTNNIPQRDGGTH 169

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R +LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 170 LVGFRSSLTRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 229

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+   
Sbjct: 230 SSEVKTAVEQEMNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIA 289

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+
Sbjct: 290 GLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKM 349

Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 350 ISSQEVGTLITALGCGIGREEYNIDKLRYHNII 382


>gi|313574637|emb|CBX26171.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574639|emb|CBX26172.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574641|emb|CBX26173.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574643|emb|CBX26174.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574645|emb|CBX26175.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574647|emb|CBX26176.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|313574649|emb|CBX26177.1| DNA gyrase subunit B [Agrobacterium tumefaciens str. C58]
          Length = 392

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 138/401 (34%), Positives = 210/401 (52%), Gaps = 14/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS  L + + R   +    F+ G+  +PL    +   + G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGRSG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF   P+ F     +D   L    +  A+L+  V+   +  +    K          
Sbjct: 61  TEVTFLASPQTFT-MTDYDYGTLEHRLRELAFLNSGVRILLTDKRHSDVKQQE-----LL 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GGL+ +++     +  +  +     +EK G    TVE A+ W +   E    + N I 
Sbjct: 115 YDGGLEAFVRYLDRAKKPLVDKPIAIHSEKDGI---TVEVALWWNDSYHENVLCFTNNIP 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  YA+ +   +   +    +D       ILSV + +P+F+ 
Sbjct: 172 QRDGGTHMAGFRAALTRQVTSYADTSGIMKREKVSLQGEDCREGLTAILSVKVPDPKFSS 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNR 440
           QTK KLVS + +  VE+ + +    +L ++P EA  L+ + V         R+ +    R
Sbjct: 232 QTKDKLVSSEVRPVVESLVNEALSTWLEEHPSEAKILIGKVVEAAVAREAARKARELTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADCS+     +ELF+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 292 KGALDIASLPGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVII 540
            A  +K+ ++Q+I  L+ ALG          + LRY K+II
Sbjct: 352 RARFDKMLSSQEIGTLITALGTSIGKDEFNADKLRYHKIII 392


>gi|148616448|gb|ABQ96967.1| GyrB [Nocardiopsis dassonvillei]
          Length = 388

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 133/394 (33%), Positives = 205/394 (52%), Gaps = 10/394 (2%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
            +Y +SGGLHGVG+SVVNALS  L V +     ++ Q++    P   L K  +  ++ GT
Sbjct: 1   KSYAVSGGLHGVGVSVVNALSTALEVEIRLHGHVWRQRYEMTAPTGELVK-GESTDETGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           +ITF PD  IF     F    L +  Q  A+L+  +      ++      G P    F++
Sbjct: 60  QITFWPDGDIFETTT-FSFETLARRMQEMAFLNKGLSITIRDER-PEHTDGGPTVNTFHY 117

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
             GL  Y++     +    + I + + E +G    +VE A+ W +     + ++ NTI T
Sbjct: 118 DEGLSDYVRHINAKKEPAHASIISFEEEGEGI---SVEIAMQWNQSYTSSVHTFANTINT 174

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            EGGTHE G R ALT  + +YA   +   ++  ++  DD+      I+SV + +P+F GQ
Sbjct: 175 AEGGTHEEGFRSALTTLVNRYARDQKLLREKDDNLTGDDIREGLTAIISVKLADPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRK 441
           TKTKL + +A+  V+    +    +  +NP EA  ++ +           R+ +    RK
Sbjct: 235 TKTKLGNTEAKSFVQKVTNEHLRDWFERNPGEAKDIVSKASQAARARVAARQARDLTRRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           T +    LPGKL+DC        E++IVEGDSAGGSAK  RN  NQA+LP+RGKILNV  
Sbjct: 295 TLLETTSLPGKLSDCQSTNPEECEVYIVEGDSAGGSAKGGRNPHNQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           +  ++I  N ++  ++ ALG     ++  E LRY
Sbjct: 355 SRIDRILKNAEVQAIITALGTGIHEEFDAEKLRY 388


>gi|29652755|gb|AAO87347.1| DNA gyrase B [Listeria monocytogenes]
          Length = 167

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 78/169 (46%), Positives = 106/169 (62%), Gaps = 2/169 (1%)

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I  N++
Sbjct: 1   LADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEE 60

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ M  L++  ++
Sbjct: 61  IRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGYI 120

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
           ++  PPL++I  G +  Y + +   +  L      G  K  I R+KGLG
Sbjct: 121 YIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYKGLG 167


>gi|45736559|dbj|BAD13358.1| DNA gyrase subunit B [Leptospira santarosai]
 gi|133778462|dbj|BAF49237.1| DNA gyrase B subunit [Leptospira santarosai serovar Shermani]
          Length = 391

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 137/397 (34%), Positives = 218/397 (54%), Gaps = 11/397 (2%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS+ L V V ++  I++QK+ +GIP+SP+E K +    RGT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSEYLEVEVHQKGKIYTQKYEKGIPVSPVEIKGESSE-RGTIV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PD  IF     F    L    +  A+L+  +       +   E   +   E F F G
Sbjct: 60  RFKPDASIFTTV-DFQFDILSARFRELAFLNKGLVLIVEDRRRSREGENLLRNE-FQFSG 117

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEG 327
           G+ ++++   EN+  +   I   + +       +++++  + E    I  + N I  + G
Sbjct: 118 GIVSFVEHINENKHPMHKVIHFERNKDDVLAEISIQYSETYTEN---IFCFTNNINNNLG 174

Query: 328 GTHESGLRVALTRGIKKYAELT---QNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GTH  G R ALTR +  + +       K    +  +D+      ++S+ I +P+F  QTK
Sbjct: 175 GTHLEGFRAALTRTLNDFLKKDTALSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTK 234

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
            KLV+ + +  ++    +    +  +NP    K+LE  I  ++ R   RK R+   RKT 
Sbjct: 235 EKLVNAEIKGIMQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTV 294

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADCS+     +EL++VEGDSAGGSAKQ R+R+ QA+LPL+GKILNV  A 
Sbjct: 295 LEGGGLPGKLADCSEKDPAFSELYLVEGDSAGGSAKQGRDRNIQAILPLKGKILNVEKAR 354

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            +KI ++++I  LV ALG      ++  + +RY K++
Sbjct: 355 LDKILSSEEIRVLVSALGTGIGEDEFNIDKIRYHKIM 391


>gi|3021626|dbj|BAA25333.1| DNA gyrase B subunit [Pseudomonas putida]
          Length = 382

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 141/393 (35%), Positives = 216/393 (54%), Gaps = 16/393 (4%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS++L +TV R   I+ Q +  G+P +P+    +     GT I F+P
Sbjct: 1   GGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGE-SETTGTHIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SAETFKNIH-FSWDILAKRIRELSFLNSGVGILLKDERSGKE-------EFFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++S++F    +++      VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTPVNSQVFHFSVQRED--GVGVEVALQWNDSFNENLLCFTNNIPQRDGGTH 169

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R +LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 170 LVGFRSSLTRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 229

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+   
Sbjct: 230 SSEVKTAVEQEMNKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIA 289

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+
Sbjct: 290 GLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKM 349

Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 350 ISSQEVGTLITALGCGIGREEYNIDKLRYHHII 382


>gi|259018104|gb|ACV89644.1| DNA gyrase subunit B [Nocardia vermiculata]
          Length = 415

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 128/421 (30%), Positives = 209/421 (49%), Gaps = 34/421 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS  + V +      ++Q++    P      +     + G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTRMVVDIDTDGYHWTQEYKDAKPGKL--VQGDPTKRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA---------EKY 255
           T   F  DP +F     ++   + +  Q  A+L+  +    + ++            EK 
Sbjct: 59  TTQRFWADPNVFETTV-YNFETISRRLQEMAFLNKGLTITLTDERVTEAEVTSEVVSEKA 117

Query: 256 GIPEKE---------------EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
             P+ +                +++PGGL+ +++     +  I + +    ++  G    
Sbjct: 118 EAPKTDEEVASEAAEPKVKTRTYHYPGGLEDFVRHINRTKQPIHNSVVGFTSKGTGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SI 357
            +E A+ W       + ++ NTI T EGGTHE G R ALT  + +YA+  +  +    ++
Sbjct: 175 ELEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNRYAKEKKLLKEKDGNL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  
Sbjct: 235 TGDDIREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKT 294

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           +++  +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGG
Sbjct: 295 IVQKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPAKSEIYIVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY 
Sbjct: 355 SAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQAIITAFGTGIHDEFDISKLRYH 414

Query: 537 K 537
           K
Sbjct: 415 K 415


>gi|317420226|emb|CBW30270.1| gyrase subunit B [Psychrobacter namhaensis]
          Length = 383

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 139/395 (35%), Positives = 219/395 (55%), Gaps = 17/395 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS +L + + R+   + Q ++ G+P + +++ E   +K GT+I
Sbjct: 1   YKVSGGLHGVGVSVVNALSKKLEMNIWREGHHYHQTYTDGVPDADIQQMEPT-DKTGTQI 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P   +F     F+   L K  +  ++L+  V+   + ++       I ++ EF   G
Sbjct: 60  RFYPSADVFTGTI-FEYDILAKRLRELSFLNSGVRIVLTDER-------IDKRHEFEHKG 111

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           GL  ++      +  I+        + +G    +VE A+ W +    ++  + N I   +
Sbjct: 112 GLSEFVSYINAGKDGINDVFHFTSDQDEGI---SVEVALQWTDTYNEKVLCFTNNIPQRD 168

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH SG R ALTRG+  Y +      K  I+   DD       I+SV + +P+F+ QTK
Sbjct: 169 GGTHLSGFRSALTRGLNSYMDRENLFKKEKIAATGDDAREGLTAIVSVKVPDPKFSSQTK 228

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTA 443
            KLVS + +  VE+A+ D F+ YL++NP     +   +I+ +  R   RK      RKT 
Sbjct: 229 DKLVSSEVKSAVESAMSDKFNDYLLENPSAGKAIANKIIDAARARDAARKAREMTRRKTT 288

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +     +EL+IVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A 
Sbjct: 289 LDIAGLPGKLADCQEKDPSLSELYIVEGDSAGGSAKQGRSRKTQAILPLKGKILNVERAR 348

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537
            +++ ++ ++ +L+ ALGC     +Y  + +RY K
Sbjct: 349 FDRMLSSAEVGNLITALGCGIGPDEYNPDKVRYHK 383


>gi|3021620|dbj|BAA25330.1| DNA gyrase B subunit [Pseudomonas putida]
          Length = 382

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 141/393 (35%), Positives = 214/393 (54%), Gaps = 16/393 (4%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS++L +TV R   I+ Q +  G+P +P+          GT I F+P
Sbjct: 1   GGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGD-SETTGTHIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SAETFKNIH-FSWDILAKRIRELSFLNSGVGILLKDERSGKE-------EFFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++S++F    ++       VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTPVNSQVFHFNVQRDD--GVGVEVALQWNDSFNENLLCFTNNIPQRDGGTH 169

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R +LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 170 LVGFRSSLTRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 229

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+   
Sbjct: 230 SSEVKTAVEQEMNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIA 289

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+
Sbjct: 290 GLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKM 349

Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 350 ISSQEVGTLITALGCGIGREEYNIDKLRYHHII 382


>gi|253317617|gb|ACT22746.1| gyrase subunit B [Vibrio harveyi]
          Length = 395

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 138/388 (35%), Positives = 213/388 (54%), Gaps = 14/388 (3%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       ++ GT+I 
Sbjct: 6   QVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIR 64

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F P  + F +   F    L K  +  ++L+  V      ++E        + + F F GG
Sbjct: 65  FWPSAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KSDHFMFEGG 117

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           ++ +++    N++ I  +IF    E++     +VE A+ W +     I  + N I   +G
Sbjct: 118 IQAFVEHLNTNKTPIIEKIFHFDFERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDG 175

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QTK 
Sbjct: 176 GTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKD 235

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAI 444
           KLVS + +  VE+A+ +    +L++NP EA  +   +I+ +  R   RK R    RK A+
Sbjct: 236 KLVSSEVKSAVESAMGEKLSEFLIENPAEAKMVCSKIIDAARAREAARKAREMTRRKGAL 295

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  
Sbjct: 296 DLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARF 355

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREED 532
           +K+ ++Q++  L+ ALGC         D
Sbjct: 356 DKMLSSQEVATLITALGCGIGRDEYNPD 383


>gi|3021622|dbj|BAA25331.1| DNA gyrase B subunit [Pseudomonas putida]
          Length = 382

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 140/393 (35%), Positives = 215/393 (54%), Gaps = 16/393 (4%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS++L +TV R   I+ Q +  G+P +P+    +     GT I F+P
Sbjct: 1   GGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGE-SETTGTHIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SAETFKNIH-FSWDILAKRIRELSFLNSGVGILLKDERSGKE-------EFFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++S++F    +++      VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTPVNSQVFHFSVQRED--GVGVEVALQWNDSFNENLLCFTNIIPQRDGGTH 169

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R +LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 170 LVGFRSSLTRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 229

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+   
Sbjct: 230 SSEVKTAVEQEMNKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIA 289

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +EL++VEGDSAGGSA QA NR  QA+LPL+GKILNV  A  +K+
Sbjct: 290 GLPGKLADCQEKDPALSELYLVEGDSAGGSANQANNRRTQAILPLKGKILNVEKARFDKM 349

Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 350 ISSQEVGTLITALGCGIGREEYNIDKLRYHHII 382


>gi|6644316|gb|AAF21001.1|AF208250_1 DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 387

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 142/386 (36%), Positives = 213/386 (55%), Gaps = 16/386 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P P IF D   F    L K  +  ++L+  V      +++  E         F + GG+K
Sbjct: 60  PSPTIFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIK 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGT
Sbjct: 112 AFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KL
Sbjct: 169 HLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
           VS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+  
Sbjct: 229 VSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDI 288

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 289 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 348

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED 532
           + ++Q++  L+ ALGC         D
Sbjct: 349 MISSQEVGTLITALGCGIGRDEYNPD 374


>gi|6644318|gb|AAF21003.1|AF208252_1 DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 387

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 142/386 (36%), Positives = 213/386 (55%), Gaps = 16/386 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P P IF D   F    L K  +  ++L+  V      +++  E         F + GG+K
Sbjct: 60  PSPTIFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIK 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGT
Sbjct: 112 AFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KL
Sbjct: 169 HLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
           VS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+  
Sbjct: 229 VSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDI 288

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 289 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 348

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED 532
           + ++Q++  L+ ALGC         D
Sbjct: 349 MISSQEVGTLITALGCGIGRDEYNPD 374


>gi|302030076|gb|ADK91573.1| DNA gyrase subunit beta [Aeromonas sobria]
          Length = 374

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 142/386 (36%), Positives = 213/386 (55%), Gaps = 16/386 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P P IF D   F    L K  +  ++L+  V      +++  E         F + GG+K
Sbjct: 60  PSPAIFSDTL-FHYEILAKRLRELSFLNSGVSIRLRDERDGRE-------AHFCYEGGIK 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGT
Sbjct: 112 AFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KL
Sbjct: 169 HLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
           VS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+  
Sbjct: 229 VSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDI 288

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 289 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 348

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED 532
           + ++Q++  L+ ALGC         D
Sbjct: 349 MISSQEVGTLITALGCGIGRDEYNPD 374


>gi|157073793|dbj|BAF79895.1| gyrase B [Methylobacterium rhodesianum]
 gi|157073803|dbj|BAF79900.1| gyrase B [Methylobacterium rhodesianum]
          Length = 399

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 143/408 (35%), Positives = 219/408 (53%), Gaps = 21/408 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS  L + + R       +F  G  ++PLE      ++RG
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSTSLKLRIWRGGKEHRMEFRHGDAVAPLEVVGPAGDRRG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF P P+ F     FD A L K  +  A+L+  V+   +  +    K      EE  
Sbjct: 61  TEVTFLPSPETF-TMTEFDFATLEKRLRELAFLNSGVRIVLTDARHAEHKR-----EELC 114

Query: 265 FPGGLKTYLQTKLENRSLIS--SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           + GG++ +++    +R  +   ++  T   E+ G     VE A  W +     +  + N 
Sbjct: 115 YEGGVEAFVRYLDRSRKPVEGMTKPVTVLGERDGI---RVEVAFWWNDSFNETVLPFTNN 171

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R ALTR +  YAE +    K  +S+  DD       ++SV + +P+F
Sbjct: 172 IPQRDGGTHMAGFRAALTRQMTGYAESSGIAKKEKVSLTGDDCREGLTAVISVQVPDPKF 231

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK-LLEWVIERSEERLRRRKQREV 438
           + QTK KLVS + +  VEN L +    +L +NP +A   + + V+  +     R+ +  +
Sbjct: 232 SSQTKDKLVSSEVRPAVENILNEGLSRWLEENPAQAKSVMAKVVLAAAAREAARKARETI 291

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +      EL +VEGDSAGGSAKQ R+R+ QAVLPLRGKILN
Sbjct: 292 TRKGALDIASLPGKLADCQERDPTKCELLLVEGDSAGGSAKQGRDRTFQAVLPLRGKILN 351

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVII 540
           V    ++++ ++ +I  L+ ALG         R  +  + LRY ++II
Sbjct: 352 VERVRADRMLSSAEIGTLITALGAGIGRSSTDREGFNPDKLRYHRIII 399


>gi|324962644|gb|ADY62424.1| gyrase subunit B [Frankia sp. CmM1]
          Length = 360

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 105/335 (31%), Positives = 163/335 (48%), Gaps = 21/335 (6%)

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           ++  +G + V DNGRGIPV  HP    +  +E++LTTLHAGGKFD  +Y +SGGLHGVG+
Sbjct: 1   TMLADGGVRVSDNGRGIPVGEHP-TEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHGVGV 59

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS  L V + R+   + Q +    P +PL K      K GT +TF  D  IF   
Sbjct: 60  SVVNALSTRLEVEIRREGFTWFQPYENTRPAAPLAK-GAPTRKTGTTVTFWADDTIFET- 117

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             +    L +  Q  A+L+  +      ++        P +  + + GGL  +++    +
Sbjct: 118 TDYKYETLSRRLQEMAFLNKGLTISLRDER-----PEEPLEVTYRYAGGLVDFVEHLNAS 172

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  I   + +  ++  G      E A+ W       + ++ NTI T EGGTHE G R AL
Sbjct: 173 KDPIHKTVISLDSKGTGI---EAELAMQWNSGYNESVYTFANTINTHEGGTHEEGFRAAL 229

Query: 339 TRGIKKYAELTQNKRAISIISDDL---------MISAVGILSVFIREPEFAGQTKTKLVS 389
           T  +  YA+     +       +                I+SV + +P+F GQTKTKL +
Sbjct: 230 TSAVNAYAKDQNLLKPPKSNGKNPDERLAGDDIREGLTAIISVKLAQPQFEGQTKTKLGN 289

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            +A+R V+         +L  N +EA  ++   ++
Sbjct: 290 SEAKRFVQEMCYSALKDWLEANRVEARAIVSKALD 324


>gi|133778476|dbj|BAF49244.1| DNA gyrase B subunit [Leptospira interrogans serovar Copenhageni]
 gi|133778478|dbj|BAF49245.1| DNA gyrase B subunit [Leptospira interrogans serovar
           Icterohaemorrhagiae]
 gi|133778480|dbj|BAF49246.1| DNA gyrase B subunit [Leptospira interrogans serovar
           Icterohaemorrhagiae]
 gi|133778484|dbj|BAF49248.1| DNA gyrase B subunit [Leptospira interrogans serovar Australis]
 gi|133778486|dbj|BAF49249.1| DNA gyrase B subunit [Leptospira interrogans serovar Autumnalis]
 gi|283132381|dbj|BAI63596.1| DNA gyrase subunit B [Leptospira interrogans]
 gi|283132385|dbj|BAI63598.1| DNA gyrase subunit B [Leptospira interrogans]
 gi|283132395|dbj|BAI63603.1| DNA gyrase subunit B [Leptospira interrogans]
 gi|283132397|dbj|BAI63604.1| DNA gyrase subunit B [Leptospira interrogans]
 gi|283132399|dbj|BAI63605.1| DNA gyrase subunit B [Leptospira interrogans]
          Length = 389

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 132/397 (33%), Positives = 215/397 (54%), Gaps = 13/397 (3%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS+ L V V ++  +++QK+ +G+P+S ++ +      RGT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSEYLEVEVHQKGKVYTQKYEKGVPVSSVQIQGDSSE-RGTIV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PD  IF     F    L    +  A+L+  +       +   E     E   F F G
Sbjct: 60  RFKPDATIFTTV-DFQFDVLSARFRELAFLNKGLVLVVEDHRRGKENILRNE---FQFSG 115

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEG 327
           G+ ++++   EN+  +   I   + +       +++++  + E    I  + N I  + G
Sbjct: 116 GIVSFVEHINENKHPMHKVIHFERNKDDVLAEISIQYSETYTEN---IFCFTNNINNNLG 172

Query: 328 GTHESGLRVALTRGIKKYAELTQ---NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GTH  G R ALTR +  + +       K    +  +D+      ++S+ I +P+F  QTK
Sbjct: 173 GTHLEGFRAALTRTLNDFLKKDSTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTK 232

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
            KLV+ + +  ++    +    +  +NP    K+LE  I  ++ R   RK R+   RKT 
Sbjct: 233 EKLVNAEIKGIMQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTV 292

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADCS+     +EL++VEGDSAGGSAKQ R+R+ QA+LPL+GKILNV  A 
Sbjct: 293 LEGGGLPGKLADCSEKDPAHSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKAR 352

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            +KI ++++I  LV ALG      ++  + +RY K++
Sbjct: 353 LDKILSSEEIRVLVSALGTGIGEDEFNIDKIRYHKIM 389


>gi|51571607|emb|CAH18970.1| gyrase B [Corallococcus coralloides]
          Length = 385

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 135/397 (34%), Positives = 210/397 (52%), Gaps = 17/397 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
            Y++SGGLHGVG++ VN LS+   V V  +  ++   + RGIP  P+++     +KRGT 
Sbjct: 1   AYKVSGGLHGVGVTCVNFLSEWFKVRVQTKGKVYEHSYERGIPTGPVQEVGST-DKRGTY 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F+PD  +      F+   L +  +  A+L+  +       +   E         F F 
Sbjct: 60  IAFKPDTTVMETV-DFNFETLSQRLRELAFLNAGLHITIRDLRTNKEHE-------FKFD 111

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+ ++++   +++ ++  +    KTE++G    T+E A+ W +     I ++ N I T 
Sbjct: 112 GGIASFVEYLNKSKEVLHDKPIAFKTEREGV---TLEIAMQWNDGYDERIYTFANNINTH 168

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQT 383
           EGG+H SG + ALTR +  YAE     + +      +D       ++SV +  P+F GQT
Sbjct: 169 EGGSHLSGFKAALTRTLNSYAEKGGQWKDLKETPTGEDAREGLSAVISVKLPNPQFEGQT 228

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKT 442
           KTKL + + +  VE  + D    +L + P+ A K++  +          R+ +  V RK 
Sbjct: 229 KTKLGNSEVKGLVEQMVNDQLATFLEETPMVAKKVVAKIGDACRARIAARKARETVRRKG 288

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
            +    LPGKLADC     + +EL+IVEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A
Sbjct: 289 VLDGGGLPGKLADCQSRDPNESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKA 348

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
             EK+  + +I+ L+ ALG       Y  E  RY ++
Sbjct: 349 RFEKMLTSAEIVTLITALGTGIGAEDYDPEKARYHRI 385


>gi|18147153|dbj|BAB83057.1| DNA gyrase subunit B [Alcanivorax sp. Mho1]
          Length = 380

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 144/392 (36%), Positives = 209/392 (53%), Gaps = 18/392 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS+EL +T+ R   +  Q +  G+P  PL+      +  GT I F
Sbjct: 1   VSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYRHGVPDKPLDVVGNT-DSSGTSIHF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           RP  + F +   F    L K  +  ++L+  V+     ++   E       E F + GGL
Sbjct: 60  RPSAETFSNI-KFHYDILAKRLRELSFLNSGVRIHLKDERSGEE-------EVFEYEGGL 111

Query: 270 KTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
             ++    EN++ ++         E+ G     VE A+ W +     I  + N I   +G
Sbjct: 112 SAFVSFLNENKTPLNQVFHFQYDREEDGI---AVEVAMQWNDSYQENIFCFTNNIPQRDG 168

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH +G R ALTR +  Y +      K   +   DD       ++SV + +P+F+ QTK 
Sbjct: 169 GTHLAGFRGALTRTLNNYMDKEGLLKKEKANPSGDDAREGLTAVISVKVPDPKFSSQTKD 228

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAI 444
           KLVS + +  VE  + + F  YL++NP EA  + + +I+ +  R   RK      RK A+
Sbjct: 229 KLVSSEVKGAVEQTMGELFQDYLLENPGEAKAITQKIIDAARARDAARKAREMTRRKGAL 288

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC Q     +EL+IVEGDSAGGSAKQ R+R NQA+LPL+GKILNV  A  
Sbjct: 289 DIAGLPGKLADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARF 348

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYRE-EDLRY 535
           +K+ ++Q++  L+ ALGC         E LRY
Sbjct: 349 DKMLSSQEVGTLITALGCGIGRDEYNVEKLRY 380


>gi|6644321|gb|AAF21006.1|AF208255_1 DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 386

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 142/386 (36%), Positives = 213/386 (55%), Gaps = 16/386 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P P IF D   F    L K  +  ++L+  V      +++  E         F + GG+K
Sbjct: 60  PSPTIFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIK 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGT
Sbjct: 112 AFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KL
Sbjct: 169 HLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
           VS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+  
Sbjct: 229 VSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDI 288

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 289 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 348

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED 532
           + ++Q++  L+ ALGC         D
Sbjct: 349 MISSQEVGTLITALGCGIGRDEYNPD 374


>gi|19912117|dbj|BAB88370.1| DNA gyrase subunit B [Cytophaga sp. MBIC01539]
          Length = 390

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 142/388 (36%), Positives = 214/388 (55%), Gaps = 10/388 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+S VNALS +L  TV R   I  Q+F  GIP  P ++     ++RGT I F
Sbjct: 1   VSGGLHGVGVSCVNALSTDLKATVYRNGVITEQEFKIGIPQYPAKQVG-TTDRRGTTIHF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +PD  IF     +    +    +  ++L+  ++   +  +E  E  G  + +EFY  GGL
Sbjct: 60  KPDASIFA-ITEYKYETIANRLREMSFLNAGIRIFLTDLRE-TEDDGSVKSDEFYSEGGL 117

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGG 328
             ++Q    +R  I     +  TEK G     V+ A+ +     E   SY NTI T EGG
Sbjct: 118 VEFVQYLDVSREKIIDTPISIDTEKNGVP---VQVAMNYNSSYSENVVSYVNTINTYEGG 174

Query: 329 THESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           +H SG R ALTR +K YA+ +    K  + +  DD       ++SV + EP+F GQTKTK
Sbjct: 175 SHVSGFRRALTRTLKSYADKSGMLDKLKMEVSGDDFREGLTAVISVKVAEPQFEGQTKTK 234

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           L + D    V++A+ +    +L ++P EA  ++  VI  ++ R   RK RE+ ++  +  
Sbjct: 235 LGNSDVVGAVDSAVSEALQIWLEEHPKEAKIIVGKVILAAQARHAARKAREMVQRKNVLG 294

Query: 447 LRLPGKL-ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
                   ADC+ +     EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A   
Sbjct: 295 GGGLPGKLADCANSDPTVCELYLVEGDSAGGSAKQGRDRDFQAILPLKGKILNVEKAHEH 354

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDL 533
           KI +N++I +++ ALG +  +   +++L
Sbjct: 355 KIYDNEEIKNILTALGVKIGTVNDDKEL 382


>gi|238477948|gb|ACR43667.1| DNA gyrase subunit B [Aeromonas enteropelogenes]
          Length = 374

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 142/386 (36%), Positives = 213/386 (55%), Gaps = 16/386 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P P IF D   F    L K  +  ++L+  V      +++  E         F + GG+K
Sbjct: 60  PSPTIFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIK 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGT
Sbjct: 112 AFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KL
Sbjct: 169 HLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
           VS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+  
Sbjct: 229 VSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDI 288

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 289 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 348

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED 532
           + ++Q++  L+ ALGC         D
Sbjct: 349 MISSQEVGTLITALGCGIGRDEYNPD 374


>gi|255599679|ref|XP_002537281.1| DNA gyrase subunit B, putative [Ricinus communis]
 gi|223516859|gb|EEF25103.1| DNA gyrase subunit B, putative [Ricinus communis]
          Length = 142

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 78/146 (53%), Positives = 99/146 (67%), Gaps = 6/146 (4%)

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKI 600
           MTDADVDGAHIASLL+TFFY+ M DLI    L+L  PPL+R++ G K+ YA D+ HK ++
Sbjct: 1   MTDADVDGAHIASLLITFFYRTMPDLIRAGRLYLALPPLYRLSHGGKTEYARDDAHKDEL 60

Query: 601 LEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660
           L    K    K EI RFKGLGEM+ASQLKET MD   RTL RV + +   +++D    + 
Sbjct: 61  LATMFK--GKKPEIGRFKGLGEMMASQLKETTMDPAVRTLARVTLPRHEETVED---LVE 115

Query: 661 KLMGTKADERFKFIQERASF-IDDVG 685
            LMG K + RFKFIQ+ A+F  DD+ 
Sbjct: 116 TLMGRKPELRFKFIQDNAAFAADDLD 141


>gi|45736561|dbj|BAD13359.1| DNA gyrase subunit B [Leptospira santarosai]
          Length = 391

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 137/397 (34%), Positives = 218/397 (54%), Gaps = 11/397 (2%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS+ L V V ++  I++QK+ +GIP+SP+E K +    RGT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSEYLEVEVHQKGKIYTQKYEKGIPVSPVEIKGESSE-RGTIV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PD  IF     F    L    +  A+L+  +       +   E   +   E F F G
Sbjct: 60  RFKPDASIFTTV-DFQFDILSARFRELAFLNKGLVLIVEDRRRSREGENLLRNE-FQFSG 117

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEG 327
           G+ ++++   EN+  +   I   + +       +++++  + E    I  + N I  + G
Sbjct: 118 GIVSFVEHINENKHPMHKVIHFERNKDDALAEISIQYSETYTEN---IFCFTNNINNNLG 174

Query: 328 GTHESGLRVALTRGIKKYAELT---QNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GTH  G R ALTR +  + +       K    +  +D+      ++S+ I +P+F  QTK
Sbjct: 175 GTHLEGFRAALTRTLNDFLKKDTALSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTK 234

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
            KLV+ + +  ++    +    +  +NP    K+LE  I  ++ R   RK R+   RKT 
Sbjct: 235 EKLVNAEIKGIMQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTV 294

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADCS+     +EL++VEGDSAGGSAKQ R+R+ QA+LPL+GKILNV  A 
Sbjct: 295 LEGGGLPGKLADCSEKDPAFSELYLVEGDSAGGSAKQGRDRNIQAILPLKGKILNVEKAR 354

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            +KI ++++I  LV ALG      ++  + +RY K++
Sbjct: 355 LDKILSSEEIRVLVSALGTGIGEDEFNIDKIRYHKIM 391


>gi|115500952|dbj|BAF34146.1| B subunit gyrase [Pseudomonas nitroreducens]
          Length = 394

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 140/405 (34%), Positives = 216/405 (53%), Gaps = 16/405 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           ++ Y++SGGLHGVG+SVVNALS EL +T+ R+  ++ Q +  G+P  PL          G
Sbjct: 1   DNIYKVSGGLHGVGVSVVNALSHELRLTIRREGKVWEQVYHHGVPQFPLRPVGDTEG-SG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F+P P+ F +   F    L K  +  ++L+         ++         ++E F 
Sbjct: 60  TEVHFKPSPETFHNIH-FSWDILAKRIRELSFLNSGEGIVLRDER-------TGKEELFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GGLK +++    N++ ++         ++      V+ A+ W +        + N I 
Sbjct: 112 YEGGLKAFVEYLNTNKTAVNQVFHFNCQLQEN--GVGVKVALQWNDSFKRNILCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  Y E     +        DD       I+SV + +P+F+ 
Sbjct: 170 QRDGGTHLAGFRSALTRHLNNYIEQEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    R
Sbjct: 230 QTKDKLVSSEVKTAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR  QA+LPL+GKILNV 
Sbjct: 290 KGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  ++I  + 
Sbjct: 350 KARFDKMLSSQEVGTLITALGCGIGREEYNIDKLRYHNMVIGEEH 394


>gi|308152571|dbj|BAJ22264.1| DNA gyrase subunit B [Mycobacterium sp.]
          Length = 419

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 123/424 (29%), Positives = 204/424 (48%), Gaps = 35/424 (8%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y++SGGLHGVG+SVVNALS  L   + +    + Q +   +P +  +  +  +     
Sbjct: 2   GAYQVSGGLHGVGVSVVNALSTRLEADIYKDGYEWFQTYDNSVPGTLKQGDKTTKTGTTI 61

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK----------- 254
           R    P+     +   +D   + +  Q  A+L+  +    + ++   ++           
Sbjct: 62  RFWADPN---VFETTVYDFETIARRLQEMAFLNKGLTIELTDERVTQDEIVDEVVADTAA 118

Query: 255 --------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                             +   F++PGGL  +++     ++ I   +     +  G    
Sbjct: 119 APKTAEETAAEAAAPHKVKHRTFHYPGGLVDFVKHINRTKTAIQPSVIDFDGKGTGH--- 175

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISI 357
            VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +     +  ++
Sbjct: 176 EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRSALTTVVNKYAKDKKLLKDKDPNL 235

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP EA  
Sbjct: 236 TGDDIREGLAAVISVKVAQPQFEGQTKTKLGNTEVKSFVQKICNEQLTHWFEANPAEAKT 295

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGG
Sbjct: 296 VVNKAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPTKSELYVVEGDSAGG 355

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY 
Sbjct: 356 SAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDISKLRYH 415

Query: 537 KVII 540
           K+++
Sbjct: 416 KIVL 419


>gi|308153108|dbj|BAJ22143.1| DNA gyrase subunit B [Pseudonocardia yunnanensis]
          Length = 404

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 128/408 (31%), Positives = 211/408 (51%), Gaps = 20/408 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y +SGGLHGVG+SVVNALS  L V +     ++ Q ++R +P    +   +   + G+ 
Sbjct: 3   SYAVSGGLHGVGVSVVNALSVALDVEINTDGFVWRQHYARSVPGPLRK--GEPTKRTGSS 60

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP-------- 258
           +TF PD  IF     F+   + +  Q  A+L+  +      ++                 
Sbjct: 61  VTFWPDGDIFETLT-FNIETIRRRLQEMAFLNKGLTIVLRDERNGDNGEAEEPDAEGYVA 119

Query: 259 --EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
             ++  F +P GL+ ++    +++  I  ++     E +G     VE A+ W       +
Sbjct: 120 KVKEYTFCYPNGLEDFVAHLNKSKDPIHKKLVAYTAEGEGH---AVEVAMQWNSGYTESV 176

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
            ++ NTI T EGGTHE G R ALT  + +YA   +   ++  ++  DD+      I+SV 
Sbjct: 177 YTFANTINTHEGGTHEEGFRSALTTTVNRYARDKKLLKEKDPALSGDDIREGLAAIVSVK 236

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           ++EP+F GQTKTKL + + +  V+    +    +  +NP EA  ++   ++ ++ R   R
Sbjct: 237 VKEPQFEGQTKTKLGNTEVKSFVQRVSNEWLADWFERNPAEAKLIVNKAVQSAQARAAAR 296

Query: 434 KQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           K    V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LP+
Sbjct: 297 KARELVRRKSAGDIGGLPGKLADCRSTDPSKSEVYIVEGDSAGGSAKSGRDSMFQAILPI 356

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           RGKI+NV  A  +++  N ++  ++ ALG     ++    LRY K+++
Sbjct: 357 RGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDLAKLRYHKIVL 404


>gi|259018110|gb|ACV89647.1| DNA gyrase subunit B [Nocardia thailandica]
          Length = 415

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 129/421 (30%), Positives = 207/421 (49%), Gaps = 34/421 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS +L   +      ++Q +    P      + +   + G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSSKLEAEIDNDGYHWTQVYKDAKPGQL--IQGEPTKRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------ 258
           T I F  DP+IF     ++   + +  Q  A+L+  +    +  +               
Sbjct: 59  TTIRFWADPEIFETTT-YNFETVSRRLQEMAFLNKGLTITLTDQRVSENDVTDEVVSETA 117

Query: 259 ------------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                             +   +++PGGL  +++     ++ I + +     +  G    
Sbjct: 118 EAPKHAEEGAEAPAEPKVKTRTYHYPGGLVDFVRHINRTKTPIHNSVVGFTGKGTGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SI 357
            +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++
Sbjct: 175 ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKEKKLLKEKDGNL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  
Sbjct: 235 TGDDIREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRACNEHLTHWFEANPADAKT 294

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           +++  +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGG
Sbjct: 295 IVQKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKEPSKSEIYIVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY 
Sbjct: 355 SAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYH 414

Query: 537 K 537
           K
Sbjct: 415 K 415


>gi|133778470|dbj|BAF49241.1| DNA gyrase B subunit [Leptospira kirschneri serovar Vanderhoedeni]
 gi|133778488|dbj|BAF49250.1| DNA gyrase B subunit [Leptospira kirschneri]
 gi|133778490|dbj|BAF49251.1| DNA gyrase B subunit [Leptospira kirschneri]
          Length = 389

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 133/397 (33%), Positives = 215/397 (54%), Gaps = 13/397 (3%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS+ L V V ++  I++QK+ +G+P+S ++ +      RGT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSEYLEVEVHQKGKIYTQKYEKGVPVSSVQIQGDSSE-RGTIV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PD  IF     F    L    +  A+L+  +       +   E     E   F F G
Sbjct: 60  RFKPDATIFTTV-DFQFDVLSARFRELAFLNKGLVLVVEDHRRGKENILRNE---FQFSG 115

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEG 327
           G+ ++++   EN+  +   I   + +       +++++  + E    I  + N I  + G
Sbjct: 116 GIVSFVEHINENKHPMHKVIHFERNKDDVLAEISIQYSETYTEN---IFCFTNNINNNLG 172

Query: 328 GTHESGLRVALTRGIKKYAELTQ---NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GTH  G R ALTR +  + +       K    +  +D+      ++S+ I +P+F  QTK
Sbjct: 173 GTHLEGFRAALTRTLNDFLKKDSALSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTK 232

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
            KLV+ + +  ++    +    +  +NP    K+LE  I  ++ R   RK R+   RKT 
Sbjct: 233 EKLVNAEIKGIMQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTV 292

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADCS+     +EL++VEGDSAGGSAKQ R+R+ QA+LPL+GKILNV  A 
Sbjct: 293 LEGGGLPGKLADCSEKDPAHSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKAR 352

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            +KI ++++I  LV ALG      ++  + +RY K++
Sbjct: 353 LDKILSSEEIRVLVSALGTGIGEDEFNVDKIRYHKIM 389


>gi|219944536|gb|ACL55042.1| DNA gyrase B subunit [Dietzia cinnamea]
          Length = 440

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 140/443 (31%), Positives = 212/443 (47%), Gaps = 61/443 (13%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD+ +Y +SGGLHGVGISVVNALS  + V + R   ++ Q F   +P   ++      
Sbjct: 1   GKFDSDSYAVSGGLHGVGISVVNALSTRVEVQIKRDGRLWKQDFDMAVPAELVDA--GPA 58

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI--- 257
              GT++ F  DP IF     +D   + +  Q  A+L+  +    +  +  AEK      
Sbjct: 59  EGTGTKVRFWADPSIFETT-EYDFDIVARRLQEMAFLNKGLTITLTDRRPRAEKAAELDA 117

Query: 258 ------------------------------------------------PEKEEFYFPGGL 269
                                                             K  F++P GL
Sbjct: 118 IADSEGVGPDSAPGSDEGSDLASAVDAEQVFVEGAGDGAEAAEPEKIRERKRTFHYPDGL 177

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K Y++   ++++ I   I   + +  G     VE A+ W       + ++ NTI T EGG
Sbjct: 178 KDYVKAINKSKTAIHPTILYFEGKGTGH---EVEVAMQWNSGYSESVHTFANTINTHEGG 234

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           THE G R ALT  + KYA   +   ++  ++  DD+      ++S  I +P+F GQTKTK
Sbjct: 235 THEEGFRAALTSLVNKYARDKKLIKEKDPNLTGDDIREGLAAVISAKIADPQFEGQTKTK 294

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIR 445
           L + + +  V+  + +   H+   NP EA  ++   I  S+ R+  RK RE+  RK+A  
Sbjct: 295 LGNTEVKGFVQRQVAEHVGHWFEANPAEAKVIVNKAIASSQARVAARKAREMVRRKSATD 354

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC       +EL+IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  +  +
Sbjct: 355 IGGLPGKLADCRSKDPSKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKSRID 414

Query: 506 KIRNNQQIMDLVQALGCRTRSQY 528
           K+  N ++  ++ ALG     ++
Sbjct: 415 KVLKNAEVQAIITALGTGIHEEF 437


>gi|219944538|gb|ACL55043.1| DNA gyrase B subunit [Dietzia papillomatosis]
          Length = 440

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 141/443 (31%), Positives = 212/443 (47%), Gaps = 61/443 (13%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD+ +Y +SGGLHGVGISVVNALS  + V + R   ++ Q F   +P   ++      
Sbjct: 1   GKFDSDSYAVSGGLHGVGISVVNALSTRVEVQIKRDGRLWKQDFDMAVPAELVDA--GPA 58

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI--- 257
              GT+I F  DP IF     +D   + +  Q  A+L+  +    +  +  AEK      
Sbjct: 59  EGTGTKIRFWADPSIFETT-EYDFDIVARRLQEMAFLNKGLTITLTDRRPRAEKAAELDA 117

Query: 258 ------------------------------------------------PEKEEFYFPGGL 269
                                                             K  F++P GL
Sbjct: 118 IADSEGVGPDSAPGSDEGSDLASAVDAEQVFVEGAGDGAEAAEPEKIRERKRTFHYPDGL 177

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K Y++   ++++ I   I   + +  G     VE A+ W       + ++ NTI T EGG
Sbjct: 178 KDYVKAINKSKTAIHPTILYFEGKGTGH---EVEVAMQWNSGYSESVHTFANTINTHEGG 234

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           THE G R ALT  + KYA   +   ++  ++  DD+      ++S  I +P+F GQTKTK
Sbjct: 235 THEEGFRAALTSLVNKYARDKKLIKEKDPNLTGDDIREGLAAVISAKIADPQFEGQTKTK 294

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIR 445
           L + + +  V+  + +   H+   NP EA  ++   I  S+ R+  RK RE+  RK+A  
Sbjct: 295 LGNTEVKGFVQRQVAEHVGHWFEANPAEAKVIVNKAIASSQARVAARKAREMVRRKSATD 354

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC       +EL+IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  +  +
Sbjct: 355 IGGLPGKLADCRSKDPSKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKSRID 414

Query: 506 KIRNNQQIMDLVQALGCRTRSQY 528
           K+  N ++  ++ ALG     ++
Sbjct: 415 KVLKNAEVQAIITALGTGIHEEF 437


>gi|19909609|dbj|BAB87000.1| DNA gyrase subunit B [Marinomonas communis]
          Length = 392

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 135/401 (33%), Positives = 215/401 (53%), Gaps = 14/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+ + +T+ +   I+ Q ++ G+P +PL    +  +  G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSETVTLTIRKNGKIYEQSYAHGVPQAPLAVVGE-SDGAG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F+P  + F +   F    L K  +  ++L+  V      ++   E       E F 
Sbjct: 60  TTVHFKPSAETFSNIL-FVYDILAKRLRELSFLNSGVAIHLKDERSGKE-------EFFN 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGLK++++    N++ I+                 VE A+ W E     I  Y N I 
Sbjct: 112 YEGGLKSFVEHLNTNKTPINDIFHFICQRDDLDDGIAVEVALPWNEGFQENIYCYTNNIP 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  + E      K+ ++   DD       I+SV + +P+F+ 
Sbjct: 172 QRDGGTHLAGFRGALTRTLNNFIESEGLAKKQKVATTGDDSREGLTAIVSVKVPDPKFSS 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNR 440
           QTK KLVS + +  VE  +   F  YL++ P EA  ++  +++ +  R   R+      R
Sbjct: 232 QTKDKLVSSEVKTAVEQEMAKRFSEYLLEKPNEAKIIVNKMLDAARAREAARRARDMTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +E+++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV 
Sbjct: 292 KGALDIAGLPGKLADCQEKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVII 540
            A  +K+ ++ ++  L+ ALGC         + LRY  ++I
Sbjct: 352 KARFDKMLSSAEVGTLITALGCGIGRDEFNADKLRYHSIVI 392


>gi|317420220|emb|CBW30267.1| gyrase subunit B [Psychrobacter luti]
          Length = 383

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 138/395 (34%), Positives = 216/395 (54%), Gaps = 17/395 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS +L + + R+   + Q ++ G+P   +++ E   ++ GT+I F
Sbjct: 1   VSGGLHGVGVSVVNALSKKLEMNIWREGYHYHQTYNDGVPDGDIQQMEAT-DQTGTQIRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P   +F     F+   L K  +  ++L+  V+   + ++       I ++ EF   GGL
Sbjct: 60  YPSNDVFTGTI-FEYDILAKRLRELSFLNSGVRIVLTDER-------IDKRHEFEHKGGL 111

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
             ++      +  I+        +  G    +VE A+ W +    ++  + N I   +GG
Sbjct: 112 SEFVSYINAGKDGINDVFHFVSEQDDGI---SVEVALQWTDTYNEKVLCFTNNIPQRDGG 168

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH SG R ALTRG+  Y +      K  +    DD       I+SV + +P+F+ QTK K
Sbjct: 169 THLSGFRSALTRGLNSYMDRENLFKKEKVVATGDDAREGLTAIVSVKVPDPKFSSQTKDK 228

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIR 445
           LVS + +  VE+A+ D F+ YL++NP     +   +I+ +  R   RK      RKT + 
Sbjct: 229 LVSSEVKSAVESAMHDKFNDYLLENPSTGKAIASKIIDAARARDAARKAREMTRRKTXLD 288

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC +     +EL+IVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +
Sbjct: 289 IAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRSRKTQAILPLKGKILNVERARFD 348

Query: 506 KIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
           K+ ++ ++ +L+ ALGC     +Y  + +RY K+I
Sbjct: 349 KMLSSAEVGNLITALGCGIGPDEYNPDKVRYHKII 383


>gi|133778482|dbj|BAF49247.1| DNA gyrase B subunit [Leptospira interrogans serovar Hebdomadis]
          Length = 389

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 134/397 (33%), Positives = 215/397 (54%), Gaps = 13/397 (3%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS+ L V V ++  +++QK+ RGIP+S ++ +      RGT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSEYLEVEVHQKGKVYTQKYERGIPVSSVQIQGDSSE-RGTIV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PD  IF     F    L    +  A+L+  +       +   E     E   F F G
Sbjct: 60  RFKPDATIFTTV-DFQFDVLSARFRELAFLNKGLVLVVEDHRRGKENILRNE---FQFSG 115

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEG 327
           G+ ++++   EN+  +   I   + +       +++++  + E    I  + N I  + G
Sbjct: 116 GIVSFVEHINENKHPMHKVIHFERNKDDVLAEISIQYSETYTEN---IFCFTNNINNNLG 172

Query: 328 GTHESGLRVALTRGIKKYAELTQ---NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GTH  G R ALTR +  + +       K    +  +D+      ++S+ I +P+F  QTK
Sbjct: 173 GTHLEGFRAALTRTLNDFLKKDSTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTK 232

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
            KLV+ + +  ++    +    +  +NP    K+LE  I  ++ R   RK R+   RKT 
Sbjct: 233 EKLVNAEIKGIMQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTV 292

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADCS+     +EL++VEGDSAGGSAKQ R+R+ QA+LPL+GKILNV  A 
Sbjct: 293 LEGGGLPGKLADCSEKDPAHSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKAR 352

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            +KI ++++I  LV ALG      ++  + +RY K++
Sbjct: 353 LDKILSSEEIRVLVSALGTGIGEDEFNIDKIRYHKIM 389


>gi|51587623|emb|CAH19217.1| gyrase B [Corallococcus coralloides]
          Length = 386

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 135/398 (33%), Positives = 211/398 (53%), Gaps = 17/398 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
            Y++SGGLHGVG++ VN LS+   V V  +  ++   + RGIP  P+++     +KRGT 
Sbjct: 1   AYKVSGGLHGVGVTCVNFLSEWFKVRVQTKGKVYEHAYERGIPTGPVQEVG-TTDKRGTY 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F+PD  +      F+   L +  +  A+L+  +       +   E         F F 
Sbjct: 60  IAFKPDTSVMETV-DFNFETLSQRLRELAFLNAGLHITVRDLRTNKEHE-------FKFD 111

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+ ++++   +++ ++  +  + K E++G    T+E A+ W +     I ++ N I T 
Sbjct: 112 GGISSFVEYLNKSKEVLHDKPISFKAEREGV---TLEIAMQWNDGYDERIYTFANNINTH 168

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQT 383
           EGG+H SG + ALTR +  YAE     + +      +D       ++SV +  P+F GQT
Sbjct: 169 EGGSHLSGFKAALTRTLNSYAEKGGQWKDLKETPTGEDAREGLSAVISVKLPNPQFEGQT 228

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKT 442
           KTKL + + +  VE  + D    +L + P+ A K++  +          R+ +  V RK 
Sbjct: 229 KTKLGNSEVKGLVEQMVNDQLATFLEETPMVAKKVVAKIGDACRARIAARKARETVRRKG 288

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
            +    LPGKLADC     + +EL+IVEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A
Sbjct: 289 VLDGGGLPGKLADCQSRDPNESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKA 348

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
             EK+  + +I+ L+ ALG       Y  E  RY ++I
Sbjct: 349 RFEKMLTSAEIVTLITALGTGIGAEDYDPEKARYHRII 386


>gi|317420196|emb|CBW30255.1| gyrase B subunit [Pseudoalteromonas espejiana]
          Length = 386

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 134/389 (34%), Positives = 214/389 (55%), Gaps = 15/389 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS++L +T+ R+  +  Q +S G+P +PL       +  GT + F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLTLTIRREGKLHEQTYSMGVPNAPLAIIGDA-DTTGTELRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F +   F    L K  +  ++L+  V    + ++E        + + F + GG+
Sbjct: 60  WPSGETFTNL-DFHYDILAKRLRELSFLNSGVSIILTDERE------ENKSDHFKYEGGI 112

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           + +++    N++ +   +F    E++     +VE ++ W +     I  + N I   +GG
Sbjct: 113 QAFVEYLNRNKTPVHKGVFHFTHERE-EDGISVEVSMQWNDGFQENIYCFTNNIPQRDGG 171

Query: 329 THESGLRVALTRGIKKYA----ELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           TH +G R ALTR +  Y        + K   +   DD       ++SV + +P+F+ QTK
Sbjct: 172 THLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKFSSQTK 231

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTA 443
            KLVS + +  VE A+ + F  +L++NP++A  ++  +I+ +  R   RK R    RK A
Sbjct: 232 DKLVSSEVKSAVEQAMAEKFSDFLLENPMDAKIVVGKIIDAARAREAARKAREMTRRKGA 291

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +      EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A 
Sbjct: 292 MDLAGLPGKLADCQEKDPSLXELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 351

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREED 532
            +K+ ++Q++  L+ ALGC       + +
Sbjct: 352 FDKMLSSQEVATLITALGCGIGRDEYDPE 380


>gi|291192912|gb|ADD83431.1| DNA gyrase subunit B [Aeromonas veronii]
          Length = 375

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 142/386 (36%), Positives = 213/386 (55%), Gaps = 16/386 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P P IF D   F    L K  +  ++L+  V      +++  E         F + GG+K
Sbjct: 60  PSPAIFSDTL-FHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------AHFCYEGGIK 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGT
Sbjct: 112 AFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KL
Sbjct: 169 HLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
           VS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+  
Sbjct: 229 VSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDI 288

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 289 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 348

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED 532
           + ++Q++  L+ ALGC         D
Sbjct: 349 MISSQEVGTLITALGCGIGHDEYNPD 374


>gi|307947806|gb|ADN96143.1| DNA gyrase B subunit [Shewanella baltica]
          Length = 386

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 142/397 (35%), Positives = 218/397 (54%), Gaps = 16/397 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHG+G+SVVNALS +L +T+ R   ++ Q ++ G+P +P+++        GT I F 
Sbjct: 1   SGGLHGLGVSVVNALSXKLQMTIRRAGKVYEQFYTHGVPDAPIKEIGDATK-TGTEIRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P    F D   F    L K  +  ++L+  V      +++        + E F + GG+ 
Sbjct: 60  PSEDTFSDV-EFHFEILAKRVRELSFLNSGVGIRLIDERDN-------KNEFFKYEGGIS 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            ++     N++ ++ ++F    E++     TVE A+ W +     I  + N I   +GGT
Sbjct: 112 AFVDYLNRNKTPVNKDVFHFMQERED--GITVEVAMQWNDGYQENIFCFTNNIPQRDGGT 169

Query: 330 HESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R ALTR +  Y E      K   S   DD       ++SV + +P+F+ QTK KL
Sbjct: 170 HLVGFRSALTRNLNSYMENEGYNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKL 229

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRK 446
           VS + +  VE  + +  + YL++NP +A  ++  +++ +  R   RK R    RK A+  
Sbjct: 230 VSSEVKTAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDL 289

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 290 GGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 349

Query: 507 IRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
           + ++Q++  L+ ALGC   R +Y  +  RY  +IIMT
Sbjct: 350 MLSSQEVATLITALGCGIGRDEYNPDKTRYHNIIIMT 386


>gi|28974161|gb|AAO61450.1| gyrase B subunit [Bacillus safensis]
          Length = 375

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 139/382 (36%), Positives = 207/382 (54%), Gaps = 13/382 (3%)

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS  L VTV R   I  Q+F RG+P+  LE   +  +  GT   F PDP+IF + 
Sbjct: 1   SVVNALSTTLDVTVYRDGKIHYQQFKRGVPVGDLEVIGET-DVTGTTTHFVPDPEIFTET 59

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             FD   L    +  A+L+  V       +E  E+        + + GG+K+Y++    +
Sbjct: 60  IEFDYDTLANRVRELAFLTKGVNIIIEDLREGKERKNE-----YCYEGGIKSYVEHLNRS 114

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           + ++  E    + EK G    TVE A+ + +     I S+ N I T EGGTHE+G +  L
Sbjct: 115 KEVVHEEPVYIEGEKDGI---TVEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGL 171

Query: 339 TRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR I  YA      +    ++  +D+      I+S+   +P+F GQTKTKL + +A+   
Sbjct: 172 TRVINDYARKNGVFKDGDANLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTIT 231

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLAD 455
           ++   +  + +L++NP  A K++E  +  +  R+  +K      RK+A+    LPGKLAD
Sbjct: 232 DSLFSEALEKFLLENPDSAKKIVEKGLMAARARMAAKKARELTRRKSALEVSSLPGKLAD 291

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS      +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  
Sbjct: 292 CSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRA 351

Query: 516 LVQALGCRTRSQYREEDLRYEK 537
           ++ ALG      +  E  RYE+
Sbjct: 352 MITALGTGIGEDFTLEIARYEQ 373


>gi|324962620|gb|ADY62412.1| gyrase subunit B [Frankia sp. NRRLB-16512]
          Length = 362

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 106/336 (31%), Positives = 166/336 (49%), Gaps = 21/336 (6%)

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G + VVDNGRGIPV  HP    + T+E++LT LHAGGKFD  +Y +SGGLHGVGI
Sbjct: 1   TLLADGGVRVVDNGRGIPVGMHP-TEKRPTVEVVLTKLHAGGKFDGESYAVSGGLHGVGI 59

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE-KVRNKRGTRITFRPDPKIFGD 218
           SVVNALS ++ V +      ++Q+++   P    ++   K   + GT +TF  DP+IF  
Sbjct: 60  SVVNALSTKVDVEIKVDGFHWAQRYTAQRPGPLEKRAPLKRGERTGTTVTFWADPEIFET 119

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              +    L +  Q  A+L+  +      ++        P +  F +  GL  ++     
Sbjct: 120 -TEYKYETLYRRLQEMAFLNKGISISLRDER-----AEEPVEVTFMYENGLADFVTHLNA 173

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            +  I   I   + + KG      E A+ W       + ++ NTI T EGGTHE G R A
Sbjct: 174 TKDPIHKTIIALEAKGKGI---EAELAMQWNAGYNESVYTFANTINTHEGGTHEEGFRAA 230

Query: 338 LTRGIKKYAELTQNKRAISI---------ISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           LT  +  YA+     + +             +D+      I+SV + EP+F GQTKTKL 
Sbjct: 231 LTSAVNVYAKEQNLLKPVKAGAKNADERLSGEDIREGLTAIISVKLSEPQFEGQTKTKLG 290

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           + +A++ V+         +   N +EA  ++   ++
Sbjct: 291 NTEAKKFVQEMCYSALRDWFDANRVEARSIVSKALD 326


>gi|262065131|gb|ACY07619.1| gyrase B subunit [Listonella anguillarum]
          Length = 400

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 138/388 (35%), Positives = 212/388 (54%), Gaps = 14/388 (3%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G+P +PL    +  +K GT + 
Sbjct: 9   QVSGGLHGVGVSVVNALSEKVLLTIYRNGAIHTQTYCHGVPQAPLAVVGET-DKTGTTLR 67

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F P  + F +   F    L K  +  ++L+  V      ++E  +K      + F + GG
Sbjct: 68  FWPSAETFTNI-EFHYDILAKRLRELSFLNSGVSIKLFDEREEDKK------DHFRYEGG 120

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           +K ++     N++ I  ++F   +E+      TVE A+ W +     I  + N I   +G
Sbjct: 121 IKAFVGHLNRNKTPIHEKVFHFSSERDD--GITVEVAMQWNDGFQENIYCFTNNIPQRDG 178

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           G H +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QTK 
Sbjct: 179 GAHLAGFRGALTRTLNTFMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKD 238

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAI 444
           KLVS + +  VE+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK A+
Sbjct: 239 KLVSSEVKSAVESAMGEKLAEFLAENPSEAKMVCSKIIDAARAREAARKAREMTRRKGAL 298

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  
Sbjct: 299 DLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARF 358

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREED 532
           +K+ ++Q++  L+ ALGC         D
Sbjct: 359 DKMLSSQEVATLITALGCGIGRDEYNPD 386


>gi|282160683|gb|ACL13034.2| DNA gyrase subunit B [Lactobacillus iners DSM 13335]
          Length = 390

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 137/398 (34%), Positives = 211/398 (53%), Gaps = 13/398 (3%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRI 207
           ++SGGLHGVG SVVNALS +L+V V R    +   F+ G     + +  +V   + GT +
Sbjct: 1   KVSGGLHGVGASVVNALSTKLNVIVMRDGKKYCIDFNHGRVEQEVHEVGEVPLTQHGTIV 60

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F PDP IF +   FD   L    +  A+L+  +K  ++  ++        EK+ ++F G
Sbjct: 61  RFYPDPDIFTETTVFDDRILKNRIRELAFLNKGLKLTFTDKRKN-----TAEKDIYHFEG 115

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K Y+    +   ++       + +  G     VE ++ +       + ++ N I T E
Sbjct: 116 GIKEYVSFLNQKEQVLFEPPVYVEGDYDGI---NVEASLQYITGYKSTLLTFANNIHTYE 172

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GG HESG + ALTR +  YA   +  +    ++  +D+      ++S+    P+F GQTK
Sbjct: 173 GGMHESGFKTALTRVVNDYARKAKILKDNDDNLSGEDIREGMTAVISIKHPNPQFEGQTK 232

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTA 443
           TKL + DA+  V+ A  D F  +L++NP    K++E   +        +R +    +K+ 
Sbjct: 233 TKLGNSDARAAVDKAFSDTFSKFLLENPQVGRKIVEKGQLAARARIAAKRAREVTRKKSG 292

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLAD + N    +ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A 
Sbjct: 293 LEIANLPGKLADNTSNDPKISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKAS 352

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541
            ++I  NQ+I  +  ALG    + +     RY K+IIM
Sbjct: 353 MDRILANQEIRTIFTALGTGFGADFDINKARYHKLIIM 390


>gi|281486941|gb|ADA71018.1| DNA gyrase subunit B [Aeromonas allosaccharophila]
          Length = 374

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 140/386 (36%), Positives = 213/386 (55%), Gaps = 16/386 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNA+SD+L +T+ R   ++ Q +  G P +PL++        GT + F 
Sbjct: 1   SGGLHGVGVSVVNAVSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P P IF D   +    L K  +  ++L+  V      +++  E         F + GG+K
Sbjct: 60  PSPTIFTDTL-YHYEILAKRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIK 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGT
Sbjct: 112 AFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KL
Sbjct: 169 HLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
           VS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+  
Sbjct: 229 VSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDI 288

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 289 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 348

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED 532
           + ++Q++  L+ ALGC         D
Sbjct: 349 MISSQEVGTLITALGCGIGRDEYNPD 374


>gi|222872366|gb|EEF09497.1| predicted protein [Populus trichocarpa]
          Length = 391

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 78/195 (40%), Positives = 107/195 (54%), Gaps = 12/195 (6%)

Query: 20  SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79
                ++   P + + A++++   Y  SSIR+L+GLEPV+ RPGMY   T      H+  
Sbjct: 203 PAADGRASHFPQNDSMASKTS--QYSESSIRVLKGLEPVKQRPGMY---TRTDNPLHVVQ 257

Query: 80  EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139
           EVIDNA DE + GY   I V+L  +G ++V D+GRGIPV  HP+      +EI+ T LHA
Sbjct: 258 EVIDNASDEALGGYGTEILVTLHRDGSISVEDDGRGIPVGIHPE-EQVPVVEIVFTRLHA 316

Query: 140 ---GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL--- 193
                K     Y  SGGLHGVG+SV NAL+  L VTV R   + +  F  G  ++     
Sbjct: 317 GGKFDKGKGGAYAFSGGLHGVGVSVTNALATRLDVTVWRDGAVSTLTFEHGGEVTRPLAT 376

Query: 194 EKKEKVRNKRGTRIT 208
            K E+   K GTR+ 
Sbjct: 377 RKIERGEKKSGTRVQ 391


>gi|29652972|gb|AAO87455.1| DNA gyrase B [Listeria monocytogenes]
          Length = 189

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 81/189 (42%), Positives = 114/189 (60%), Gaps = 2/189 (1%)

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +R +    + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+L
Sbjct: 3   AKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAIL 62

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           P+RGKILNV  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAH
Sbjct: 63  PIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAH 122

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           I +LLLT FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  
Sbjct: 123 IRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDT 180

Query: 611 KIEISRFKG 619
           K  I R+KG
Sbjct: 181 KYSIQRYKG 189


>gi|308153164|dbj|BAJ22171.1| DNA gyrase subunit B [Mycobacterium fortuitum]
 gi|308153166|dbj|BAJ22172.1| DNA gyrase subunit B [Mycobacterium fortuitum]
          Length = 419

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 131/424 (30%), Positives = 210/424 (49%), Gaps = 35/424 (8%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y++SGGLHGVG+SVVNALS  L   +      + Q + R +P +   K+ +   + GT
Sbjct: 2   GAYQVSGGLHGVGVSVVNALSTRLEADIRTDGYEWFQTYERSVPGTL--KQGEKTKETGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------- 258
            I F  DP +F     +D   + +  Q  A+L+  +    + ++  AE+           
Sbjct: 60  TIRFWADPDVFETTV-YDFETIARRLQEMAFLNKGLTIELTDERVTAEEVVDDVVSDHAD 118

Query: 259 ------------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                             +   F++PGGL  +++     +S I   +     +  G    
Sbjct: 119 APKSAADEAAEAGAPVKVKHRVFHYPGGLVDFVKHINRTKSPIQPSVIDFDGKGPGH--- 175

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISI 357
            VE A+ W       + ++ NTI T EGGTHE G R ALT  + +Y   +     +  ++
Sbjct: 176 EVEIAMQWNGGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNRYAKEKKLLKDKDPNL 235

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             +D+      ++SV + +P+F GQTKTKL + + +  V+    +   H+L  NP EA  
Sbjct: 236 TGEDIREGLAAVISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEQISHWLEANPAEAKT 295

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   +  ++ R   RK R+ V RK+A     LPGKLADC       +EL++VEGDSAGG
Sbjct: 296 VVNKAVSSAQARAAARKARDLVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGG 355

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY 
Sbjct: 356 SAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDITKLRYH 415

Query: 537 KVII 540
           K+++
Sbjct: 416 KIVL 419


>gi|238477946|gb|ACR43666.1| DNA gyrase subunit B [Aeromonas allosaccharophila]
 gi|269849453|gb|ACZ49795.1| DNA gyrase subunit B [Aeromonas media]
 gi|269849465|gb|ACZ49801.1| DNA gyrase subunit B [Aeromonas media]
 gi|281486943|gb|ADA71019.1| DNA gyrase subunit B [Aeromonas allosaccharophila]
 gi|281486957|gb|ADA71026.1| DNA gyrase subunit B [Aeromonas media]
 gi|299829784|gb|ADJ55575.1| DNA gyrase subunit B [Aeromonas media]
          Length = 374

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 141/386 (36%), Positives = 213/386 (55%), Gaps = 16/386 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P P IF D   +    L K  +  ++L+  V      +++  E         F + GG+K
Sbjct: 60  PSPTIFTDTL-YHYEILAKRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIK 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGT
Sbjct: 112 AFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KL
Sbjct: 169 HLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
           VS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+  
Sbjct: 229 VSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDI 288

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 289 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 348

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED 532
           + ++Q++  L+ ALGC         D
Sbjct: 349 MISSQEVGTLITALGCGIGRDEYNPD 374


>gi|259018198|gb|ACV89691.1| DNA gyrase subunit B [Nocardia yamanashiensis]
          Length = 414

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 131/420 (31%), Positives = 207/420 (49%), Gaps = 33/420 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L   V      ++Q++    P      + +   + G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLEAEVDHAGYHWTQEYKDAKPGKL--VQGEPTKRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK---------- 254
           T I F  DP+IF     ++   + +  Q  A+L+  +    +  +               
Sbjct: 59  TTIRFWADPEIFETTT-YNFETVARRLQEMAFLNKGLTITLTDQRVSEGDITDEVVSDTA 117

Query: 255 -------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
                            +   +++PGGL+ Y++     ++ I + I     +  G     
Sbjct: 118 EAPKHLDENAPAAEPKVKTRTYHYPGGLEDYVKHINRTKTPIHNSIVGFTGKGTGH---E 174

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SII 358
           +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++ 
Sbjct: 175 LEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKEGNLT 234

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+      I+SV + +P+F GQTKTKL + D +  V+    +   H+   NP +A  +
Sbjct: 235 GDDIREGLAAIVSVKVADPQFEGQTKTKLGNTDVKGFVQRTCNEHLTHWFEANPADAKTI 294

Query: 419 LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           ++  +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGS
Sbjct: 295 VQKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGS 354

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K
Sbjct: 355 AKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDIAKLRYHK 414


>gi|2353014|gb|AAB92592.1| gyrase beta subunit [Shewanella woodyi ATCC 51908]
          Length = 419

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 146/430 (33%), Positives = 226/430 (52%), Gaps = 16/430 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E++L  L AGG F+  + +     H  G+SVVNALS +L +T+ R   ++ Q ++ G P+
Sbjct: 1   EVLLIALKAGGDFEVISTDADVAAHTSGVSVVNALSSKLQLTIRRDGKLYEQFYNMGEPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            P++      N  GT I F P  + F D   F    L K  +  ++L+  V      +++
Sbjct: 61  EPIKAIGDATN-TGTEIRFWPSSETFSDTL-FHFDILAKRVRELSFLNSGVGIRLVDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             +       E F + GG+  ++     N++ ++ ++F    E++     TVE A+ W +
Sbjct: 119 NKD-------EFFKYEGGISAFVDYLNVNKTPVNKDVFHFIQERED--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                I  + N I   +GGTH +G R ALTR +  Y E      K       DD      
Sbjct: 170 GFQENIFCFTNNIPQRDGGTHLAGFRGALTRNLNSYMEREGYNKKGKTGATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            ++SV + +P+F+ QTK KLVS + +  VE  + +    YL+++P +AT ++  +I+ + 
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGEQLGDYLMEHPNQATLIVGKIIDAAR 289

Query: 428 ERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK R    RK A+    LPGKLADC +      E++IVEGD A GSAKQ RNR N
Sbjct: 290 AREAARKAREMTCRKGALDLGGLPGKLADCQEKDPALFEIYIVEGDFACGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK-VIIMTDAD 545
           QA+LPL+GKILNV  A  +K+ ++Q+++ L+ ALGC       +      + V+IMTD D
Sbjct: 350 QAILPLKGKILNVEKARFDKMLSSQEVVTLITALGCGIGRGLYDPSQTGGQNVVIMTDPD 409

Query: 546 VDGAHIASLL 555
           V   HI +LL
Sbjct: 410 VRSWHINTLL 419


>gi|51870734|dbj|BAD42422.1| DNA gyrase subunit B [Halobacillus sp. IS-Hb5]
          Length = 374

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 134/386 (34%), Positives = 202/386 (52%), Gaps = 17/386 (4%)

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
            R   ++ Q +  G+P SPL+   K     GT++ F+P  + F +   F    L K  + 
Sbjct: 1   WRAGQVYEQIYHHGVPDSPLDVVGKTEK-SGTQVNFKPSTETFANI-EFHYDILAKRLRE 58

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            ++L+  V      ++  AE       E F++ GGL+ ++     N++ ++         
Sbjct: 59  LSFLNSGVAIRLIDERSGAE-------ELFHYEGGLRAFVDHLNTNKTALNQIFHFETQR 111

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350
             G     VE A+ W +     I  Y N I   +GGTH +G R ALTR +  Y E     
Sbjct: 112 DDGI---AVEVAMQWNDTFSENIFCYTNNIPQHDGGTHLAGFRAALTRTLNHYIESEGLL 168

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            K  ++   DD       I+SV + +P+F+ QTK KLVS + +  VE  +      YLV+
Sbjct: 169 KKAKVNTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGRQLSDYLVE 228

Query: 411 NPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
            P EA  ++  +++ +  R   RK      RK A+    LPGKLADC +     +EL++V
Sbjct: 229 RPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPSLSELYLV 288

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQY 528
           EGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++  L+  LGC   R ++
Sbjct: 289 EGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGTLITVLGCGIGREEF 348

Query: 529 REEDLRYEKVIIMTDADVDGAHIASL 554
             + LRY  +IIMTDADVDG+HI +L
Sbjct: 349 NPDKLRYHSIIIMTDADVDGSHIRTL 374


>gi|19912063|dbj|BAB88343.1| DNA gyrase subunit B [Cytophaga sp. I-1147]
          Length = 391

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 141/392 (35%), Positives = 206/392 (52%), Gaps = 9/392 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+S VNALS+ L  TV R+  I+ Q++SRG    P++   +     GT +TF
Sbjct: 1   VSGGLHGVGVSCVNALSNHLKATVYREGKIWEQEYSRGKAQYPVKSIGET-ELSGTVVTF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD  IF     +    L    +  AYL+  +    +  +   EK      E F+   GL
Sbjct: 60  IPDDTIFTQTTEYSYETLSNRMRELAYLNKGITIVITDKRNKDEKG-EFISETFHSQEGL 118

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGG 328
           K +++     R  + + + + + EK G     VE A+ +     E    Y N I T EGG
Sbjct: 119 KEFIKFLDATREPLINTVISMEGEKNGIP---VEVAMIYNTGFSENLHSYVNNINTHEGG 175

Query: 329 THESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH SG R  LT  +KKYA+ +    K    I  DD       I+SV + EP+F GQTK K
Sbjct: 176 THLSGFRRGLTSTLKKYADSSGLLDKLKFEISGDDFREGLTAIVSVKVSEPQFEGQTKPK 235

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IR 445
           L + +    V  A+ +    YL ++P +A +++E V   ++ R    K RE+ ++   + 
Sbjct: 236 LGTREVTSAVSQAVSEMLTDYLEEHPDDAKQIVEKVKLAAQARHAAAKAREMVQRKNPMG 295

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKL+DCS       E+F+VEGDSAGG+AK  R+R+ QA+LPLRGKILNV  A   
Sbjct: 296 GGGLPGKLSDCSDQDPENCEIFLVEGDSAGGTAKMGRDRNFQAILPLRGKILNVEKAMQH 355

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           K+  N++I ++  ALG    ++   + L  EK
Sbjct: 356 KVFENEEIKNIYTALGVTIGTEEDSKALNLEK 387


>gi|308152469|dbj|BAJ22213.1| DNA gyrase subunit B [Gordonia rubripertincta]
          Length = 424

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 131/429 (30%), Positives = 208/429 (48%), Gaps = 38/429 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS ++ + +      + Q +S   P    +       K G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTKVELEIENDGFHWEQTYSYAKPGPLEK--GDATRKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG-------- 256
           T + F PDP IF +   F+A  + +  Q  A+L+  +    +  +  A +          
Sbjct: 59  TTVRFWPDPDIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEPPGDANGDED 118

Query: 257 ---------------------IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
                                 P+   +++P GL  Y++     +  I + +     + +
Sbjct: 119 APATDVAEAVQTETEKAAAATKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGFSAKGE 178

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   +
Sbjct: 179 GH---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLIKE 235

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
           +   +  DD+      ++S  + +P+F GQTKTKL + + +  V+    +   H+   NP
Sbjct: 236 KDGKLTGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEANP 295

Query: 413 IEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
            EA  +++   + ++ R+  R+    V RKTA     LPGKLADC  N     E++IVEG
Sbjct: 296 AEAKIIVKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEG 355

Query: 472 DSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE 531
           DSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++   
Sbjct: 356 DSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDIA 415

Query: 532 DLRYEKVII 540
            LRY K+++
Sbjct: 416 KLRYHKIVL 424


>gi|270017270|gb|ACZ58152.1| DNA gyrase subunit B [Gordonia sp. CC-S5b]
          Length = 414

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 136/419 (32%), Positives = 210/419 (50%), Gaps = 38/419 (9%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+ +Y +SGGLHGVGISVVNALS ++ + +AR    ++Q +S   P +   ++  
Sbjct: 1   AGGKFDSDSYAVSGGLHGVGISVVNALSTKVELEIARDGHNWAQTYSYAKPGAL--EQGD 58

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------- 249
              K GT + F PDP+IF +   F+A  + +  Q  A+L+  +    +  +         
Sbjct: 59  ATRKTGTTVRFWPDPEIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEAPGD 118

Query: 250 --------------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFT 289
                               E A+    P+   +++P GL  Y++     +  I + +  
Sbjct: 119 ANGDEDAPATDVAEVVLTETEKAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIG 178

Query: 290 GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
              + +G     VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA  
Sbjct: 179 FSAKGEGH---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALE 235

Query: 349 TQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
            +   ++   +  DD+      ++S  + +P+F GQTKTKL + + +  V+    +   H
Sbjct: 236 KKLIKEKDGKLTGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGH 295

Query: 407 YLVQNPIEATKLLEWVIER-SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTE 465
           +   NP EA  +++   +        RR +  V RKTA     LPGKLADC  N     E
Sbjct: 296 WFEANPAEAKIIIKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPGKCE 355

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           ++IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G   
Sbjct: 356 VYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGI 414


>gi|270017258|gb|ACZ58146.1| DNA gyrase subunit B [Gordonia amicalis]
          Length = 422

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 136/427 (31%), Positives = 212/427 (49%), Gaps = 38/427 (8%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD+ +Y +SGGLHGVGISVVNALS ++ + +AR    ++Q +S   P +   ++    
Sbjct: 1   GKFDSDSYAVSGGLHGVGISVVNALSTKVELEIARDGHNWAQTYSYAKPGAL--EQGDAT 58

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK----------- 249
            K GT + F PDP+IF +   F+A  + +  Q  A+L+  +    +  +           
Sbjct: 59  RKTGTTVRFWPDPQIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEAPGDAN 118

Query: 250 ------------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGK 291
                             E A+    P+   +++P GL  Y++     +  I + +    
Sbjct: 119 GDEDAPATDVAEVVLTETEKAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGFS 178

Query: 292 TEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
            + +G     VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +
Sbjct: 179 AKGEGH---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKK 235

Query: 351 --NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
              ++   +  DD+      ++S  + +P+F GQTKTKL + + +  V+    +   H+ 
Sbjct: 236 LIKEKDGKLTGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWF 295

Query: 409 VQNPIEATKLLEWVIER-SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
             NP EA  +++   +        RR +  V RKTA     LPGKLADC  N     E++
Sbjct: 296 EANPAEAKIIIKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVY 355

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     +
Sbjct: 356 IVEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDE 415

Query: 528 YREEDLR 534
           +    LR
Sbjct: 416 FDISKLR 422


>gi|238477929|gb|ACR43658.1| DNA gyrase subunit B [Aeromonas caviae]
          Length = 374

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 139/386 (36%), Positives = 212/386 (54%), Gaps = 16/386 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P P IF D   F    L K  +  ++L+  V      +++  E         F + GG+K
Sbjct: 60  PSPTIFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIK 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGT
Sbjct: 112 AFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KL
Sbjct: 169 HLVGFRTALTRTLNNYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRK 446
           VS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE+ R+   +  
Sbjct: 229 VSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGVLDI 288

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             L GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 289 AGLHGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 348

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED 532
           + ++Q++  L+ ALGC         D
Sbjct: 349 MISSQEVGTLITALGCGIGRDEYNPD 374


>gi|83854005|gb|ABC47940.1| gyrase B subunit [Vibrio parahaemolyticus]
 gi|126035362|gb|ABN72434.1| gyrase B subunit [Vibrio parahaemolyticus]
          Length = 381

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 143/391 (36%), Positives = 217/391 (55%), Gaps = 15/391 (3%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K GT+I F P
Sbjct: 1   GGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKTGTQIRFWP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++E        +++ F + GG++ 
Sbjct: 60  SAETFSNT-EFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KQDHFMYEGGIQA 112

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++Q    N++ I  +IF    E++     +VE A+ W +     I  + N I   +GGTH
Sbjct: 113 FVQHLNTNKTPIIEKIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNNIPQRDGGTH 170

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QTK KLV
Sbjct: 171 LAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 230

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447
           S + +  VE+A+ +    +LV+NP EA  +   +I+ +  R   RK R    RK A+   
Sbjct: 231 SSEVKSAVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLA 290

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+
Sbjct: 291 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 350

Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537
            ++Q++  L+ ALGC   R +Y  + LRY  
Sbjct: 351 LSSQEVATLITALGCGIGRDEYNPDKLRYHN 381


>gi|183448231|gb|ACC62877.1| DNA gyrase subunit B [Aeromonas veronii bv. sobria]
 gi|238477936|gb|ACR43661.1| DNA gyrase subunit B [Aeromonas veronii]
 gi|238477940|gb|ACR43663.1| DNA gyrase subunit B [Aeromonas veronii]
 gi|238477942|gb|ACR43664.1| DNA gyrase subunit B [Aeromonas veronii]
 gi|291192914|gb|ADD83432.1| DNA gyrase subunit B [Aeromonas veronii]
 gi|291192918|gb|ADD83434.1| DNA gyrase subunit B [Aeromonas veronii]
 gi|291192920|gb|ADD83435.1| DNA gyrase subunit B [Aeromonas veronii]
 gi|291192926|gb|ADD83438.1| DNA gyrase subunit B [Aeromonas veronii]
 gi|291192928|gb|ADD83439.1| DNA gyrase subunit B [Aeromonas veronii]
 gi|291192932|gb|ADD83441.1| DNA gyrase subunit B [Aeromonas veronii]
          Length = 374

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 142/386 (36%), Positives = 213/386 (55%), Gaps = 16/386 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P P IF D   F    L K  +  ++L+  V      +++  E         F + GG+K
Sbjct: 60  PSPAIFSDTL-FHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------AHFCYEGGIK 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGT
Sbjct: 112 AFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KL
Sbjct: 169 HLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
           VS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+  
Sbjct: 229 VSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDI 288

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 289 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 348

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED 532
           + ++Q++  L+ ALGC         D
Sbjct: 349 MISSQEVGTLITALGCGIGRDEYNPD 374


>gi|307947820|gb|ADN96149.1| DNA gyrase B subunit [Shewanella baltica]
          Length = 386

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 141/397 (35%), Positives = 218/397 (54%), Gaps = 16/397 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+S++NALS +L +T+ R   ++ Q ++ G+P +P+++        GT I F 
Sbjct: 1   SGGLHGVGVSMINALSKKLQMTIRRAGKVYEQFYTHGVPDAPIKEIGDATK-TGTEIRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P    F D   F    L K  +  ++L+  V      +++        + E F + GG+ 
Sbjct: 60  PSEDTFSDV-EFHFEILAKRVRELSFLNSGVGIRLVDERDN-------KNEFFKYEGGIS 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            ++     N++ ++ ++F    E++     TVE A+ W +     I  + N I   +GGT
Sbjct: 112 AFVDYLNRNKTPVNKDVFHFMQERED--GITVEVAMQWNDGYQENIFCFTNNIPQRDGGT 169

Query: 330 HESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R ALTR +  Y E      K   S   DD       ++SV + +P+F+ QTK KL
Sbjct: 170 HLVGFRSALTRNLNSYMENEGYNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKL 229

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRK 446
           VS + +  VE  + +  + YL++NP +A  ++  +++ +  R   RK R    RK A+  
Sbjct: 230 VSSEVKTAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDL 289

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 290 GGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 349

Query: 507 IRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
           + ++Q++  L+ ALGC   R +Y  +  RY  +IIMT
Sbjct: 350 MLSSQEVATLITALGCGIGRDEYNPDKTRYHNIIIMT 386


>gi|51571595|emb|CAH18964.1| gyrase B [Corallococcus coralloides]
          Length = 370

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 130/381 (34%), Positives = 203/381 (53%), Gaps = 16/381 (4%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y++SGGLHGVG++ VN LS+   V + R   ++ Q ++RG+     ++     +KRGT
Sbjct: 1   GAYKVSGGLHGVGVTCVNFLSEWFKVRIQRAGKVYEQSYARGVSNGSPQEVG-TTDKRGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            I F+PD ++      F+   L +  +  A+L+  +      ++   E         F F
Sbjct: 60  MIHFKPDSQVMETV-DFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD-------FKF 111

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG+ ++++   + +  +  +    KTE++G    ++E A+ W +     I ++ N I T
Sbjct: 112 DGGISSFVEYLNKAKEALHDKPVFIKTEREGV---SLEIAMQWNDGYDERIFTFANNINT 168

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQ 382
            EGG+H SG + ALTR +  YAE     + +      +D       ++SV +  P+F GQ
Sbjct: 169 HEGGSHLSGFKAALTRTLNSYAEKGSLWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQ 228

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRK 441
           TKTKL + + +  VE  + D    +L +NP  A K++  +          R+ +  V RK
Sbjct: 229 TKTKLGNSEVKGLVEQMVNDQLATFLEENPPLAKKVVAKIGDACRARLAARKARETVRRK 288

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC     H +EL+IVEGDSAGGSAKQ R+R NQA+LPLRGKILNV  
Sbjct: 289 GVLDGGGLPGKLADCQSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEK 348

Query: 502 AGSEKIRNNQQIMDLVQALGC 522
           A  EK+  + +I+ L+ ALG 
Sbjct: 349 ARFEKMLTSAEIVTLITALGT 369


>gi|58698129|ref|ZP_00373052.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58535375|gb|EAL59451.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 505

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 115/275 (41%), Positives = 170/275 (61%), Gaps = 4/275 (1%)

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR I  YA       K  +++  +D+      +LS+ + +P+F+ QTK KLV
Sbjct: 1   MAGFRSALTRCINTYATNEGFLKKAKVNLTGEDVREGLTCVLSLKMPDPKFSSQTKDKLV 60

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447
           S +A+  VE+ + D     L  +P  A  ++E  I  ++ R   RK RE V  K  I   
Sbjct: 61  SSEARAVVESIVSDKLSTILETDPKLAASIVERAIRSAKGREAARKARELVKSKNNIDIA 120

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +ELFIVEG+SAGG+AKQ RNR  QAVL LRGKILNV     ++I
Sbjct: 121 TLPGKLADCQEKAPELSELFIVEGNSAGGTAKQGRNRKTQAVLALRGKILNVERVSLDRI 180

Query: 508 RNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566
            ++ +I  L+ A+G    S++ + E  RY K+IIMTDADVDG+HI +L+LTFF++ M ++
Sbjct: 181 FSSAEIGSLITAIGAGIGSEHFDIEKARYHKIIIMTDADVDGSHIRTLILTFFFRHMREV 240

Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
           IE+ +L++  PPL+++T+  K  Y  D+E  ++ +
Sbjct: 241 IEKGYLYIAQPPLYKVTKNAKDTYIKDDETFEEYI 275



 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 4/78 (5%)

Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667
           GK  + + RFKGLGEM A QL +T ++   RTLL+VEI       ++     + LMG   
Sbjct: 431 GKKGLTLQRFKGLGEMNADQLWDTTLNPEARTLLKVEI----KDCEEADSIFSILMGDIV 486

Query: 668 DERFKFIQERASFIDDVG 685
           + R  FI   A  + DV 
Sbjct: 487 EPRRDFINSNALNVHDVD 504


>gi|308152483|dbj|BAJ22220.1| DNA gyrase subunit B [Rhodococcus rhodochrous]
          Length = 423

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 131/428 (30%), Positives = 207/428 (48%), Gaps = 38/428 (8%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y +SGGLHGVGISVVNALS ++ + +      + Q +S   P    +       K GT
Sbjct: 1   DAYAVSGGLHGVGISVVNALSTKVELEIENDGFHWEQTYSYAKPGPLEK--GDATRKTGT 58

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG--------- 256
            + F PDP IF +   F+A  + +  Q  A+L+  +    +  +  A +           
Sbjct: 59  TVRFWPDPDIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEPPGDANGDEDA 118

Query: 257 --------------------IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG 296
                                P+   +++P GL  Y++     +  I + +     + +G
Sbjct: 119 PATDVAEAVQTETEKAAAATKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGFSAKGEG 178

Query: 297 THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKR 353
                VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++
Sbjct: 179 H---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLIKEK 235

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
              +  DD+      ++S  + +P+F GQTKTKL + + +  V+    +   H+   NP 
Sbjct: 236 DGKLTGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEANPA 295

Query: 414 EATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
           EA  +++   + ++ R+  R+    V RKTA     LPGKLADC  N     E++IVEGD
Sbjct: 296 EAKIIVKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGD 355

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           SAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    
Sbjct: 356 SAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDIAK 415

Query: 533 LRYEKVII 540
           LRY K+++
Sbjct: 416 LRYHKIVL 423


>gi|283132389|dbj|BAI63600.1| DNA gyrase subunit B [Leptospira meyeri]
          Length = 391

 Score =  201 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 135/397 (34%), Positives = 217/397 (54%), Gaps = 11/397 (2%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS+ L V V ++   ++QK+++GIP+SP+E K      RGT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSEYLIVEVHQKGKYYTQKYAKGIPVSPVEMKGDSSE-RGTIV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PD  IF     F    L    +  A+L+  +       +   E   +   E F F G
Sbjct: 60  RFKPDASIFTTV-DFQFDVLSARFREFAFLNKGLVLIVEDRRRGGEGENLLRNE-FQFSG 117

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEG 327
           G+ ++++   EN+  +   I   + +       +++++  + E    I  + N I  + G
Sbjct: 118 GIVSFVEHINENKHPMHKVIHFERNKDDVIAEISIQYSETYTES---IFCFTNNINNNLG 174

Query: 328 GTHESGLRVALTRGIKKYAELT---QNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GTH  G R ALTR +  + +       K    +  +D+      ++SV I +P+F  QTK
Sbjct: 175 GTHLEGFRAALTRTLNDFLKKDTVLSKKHPTGLSGEDVKEGLTAVISVKIPQPQFNSQTK 234

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
            KLV+ + +  ++    +    +  +NP    K+LE  I  ++ R   RK R+   RKT 
Sbjct: 235 EKLVNAEIKGIMQTLTSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTV 294

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC++     +E+++VEGDSAGGSAKQ R+R+ QA+LPL+GKILNV  A 
Sbjct: 295 LEGGGLPGKLADCAEKDPALSEIYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKAR 354

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            +KI ++++I  LV ALG      ++  + +RY K++
Sbjct: 355 LDKILSSEEIRVLVSALGTGIGEDEFNIDKIRYHKIM 391


>gi|281486945|gb|ADA71020.1| DNA gyrase subunit B [Aeromonas allosaccharophila]
          Length = 374

 Score =  201 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 141/386 (36%), Positives = 212/386 (54%), Gaps = 16/386 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P P IF D   +    L K  +  ++L+  V      +++  E         F + GG+K
Sbjct: 60  PSPTIFTDTL-YHYEILAKRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIK 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGT
Sbjct: 112 AFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KL
Sbjct: 169 HLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
           VS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+  
Sbjct: 229 VSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDI 288

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 289 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 348

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED 532
             ++Q++  L+ ALGC         D
Sbjct: 349 TISSQEVGTLITALGCGIGRDEYNPD 374


>gi|219944530|gb|ACL55039.1| DNA gyrase B subunit [Dietzia sp. W5004]
          Length = 441

 Score =  201 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 141/444 (31%), Positives = 212/444 (47%), Gaps = 62/444 (13%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD+ +Y +SGGLHGVGISVVNALS  + V + R   ++ Q F    P   ++      
Sbjct: 1   GKFDSDSYAVSGGLHGVGISVVNALSTRVEVQIKRDGRLWKQDFDMAEPAELVDA--GPA 58

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI--- 257
              GT++ F  DP IF     +D   + +  Q  A+L+  +    +  +  AEK      
Sbjct: 59  EGTGTKVRFWADPSIFETT-EYDFDIVARRLQEMAFLNKGLTITLTDRRPRAEKAAELDA 117

Query: 258 -------------------------------------------------PEKEEFYFPGG 268
                                                              K  F++PGG
Sbjct: 118 IADSEGVGPDSAPGSDEGSDLASAVDAEQAFVEGAGEGDESTAETAKVRERKRTFHYPGG 177

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           LK Y++   ++++ I   I   + +  G     VE A+ W       + ++ NTI T EG
Sbjct: 178 LKDYVKAINKSKTAIHQTILYFEGKGTGH---EVEVAMQWNSGYWESVHTFANTINTHEG 234

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTHE G R ALT  + KYA   +   ++  ++  DD+      ++S  I +P+F GQTKT
Sbjct: 235 GTHEEGFRAALTSLVNKYARDKKLIKEKDPNLTGDDIREGLAAVISAKIADPQFEGQTKT 294

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAI 444
           KL + + +  V+  + +   H+   NP EA  ++   I  S+ R+  RK RE+  RK+A 
Sbjct: 295 KLGNTEVKGFVQRQVTEHVGHWFEANPAEAKVIVNKAIASSQARVAARKAREMVRRKSAT 354

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC       +EL+IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  +  
Sbjct: 355 DIGGLPGKLADCRSKDPAKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKSRI 414

Query: 505 EKIRNNQQIMDLVQALGCRTRSQY 528
           +K+  N ++  ++ ALG     ++
Sbjct: 415 DKVLKNAEVQAIITALGTGIHEEF 438


>gi|324962624|gb|ADY62414.1| gyrase subunit B [Frankia sp. DC12]
          Length = 362

 Score =  200 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 107/336 (31%), Positives = 167/336 (49%), Gaps = 21/336 (6%)

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G + VVDNGRGIPV  HP    + T+E++LT LHAGGKFD  +Y +SGGLHGVGI
Sbjct: 1   TLLADGGVRVVDNGRGIPVGMHP-TEKRPTVEVVLTKLHAGGKFDGESYAVSGGLHGVGI 59

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE-KVRNKRGTRITFRPDPKIFGD 218
           SVVNALS ++ V +     +++Q+++   P    ++   K   + GT +TF  DP+IF  
Sbjct: 60  SVVNALSTKVDVEIKVDGFVWAQRYTAQRPGPLEKRAPLKRGERTGTTVTFWADPEIFET 119

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              +    L +  Q  A+L+  +      ++        P +  F +  GL  ++     
Sbjct: 120 -TEYKYETLYRRLQEMAFLNKGISISLRDER-----PEEPVEVTFMYEKGLADFVTHLNA 173

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            +  I   I   + + KG      E A+ W       + ++ NTI T EGGTHE G R A
Sbjct: 174 TKDPIHKTIVALEAKGKGI---EAEVAMQWNAGYNESVYTFANTINTHEGGTHEEGFRAA 230

Query: 338 LTRGIKKYAELTQNKRAISI---------ISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           LT  +  YA+     + +             DD+      I+SV + EP+F GQTKTKL 
Sbjct: 231 LTSAVNVYAKEQNLLKPVKAGAKNTDERLSGDDIREGLTAIISVKLAEPQFEGQTKTKLG 290

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           + +A++ V+         +   N +EA  ++   ++
Sbjct: 291 NTEAKKFVQEMCYSALRDWFDANRVEARSIVGKALD 326


>gi|198042676|gb|ACH81163.1| GyrB [Alteromonas sp. UST981101-024]
          Length = 376

 Score =  200 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 136/384 (35%), Positives = 212/384 (55%), Gaps = 15/384 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L + + R      Q++  G+P +PL       +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSSKLKLRIRRAGKAHEQEYHHGVPQAPLAVTGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I F P    F D   +    L K  +  ++L+  V      +++  E       + F 
Sbjct: 60  TMIRFWPSADTFTDTL-YHYDILAKRLRELSFLNSGVSIRLKDERDGKE-------DHFM 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG++ +++   E ++ +  ++F   +E++      V+ A+ W +     +    N IL
Sbjct: 112 YEGGIQAFVEYLNEKKTPVHQKVFHFASEQED--GIAVKVAMQWNDSFQENVFCLTNNIL 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAG 381
             EGGTH +G R ALTR +  Y E      K   +   DD       ++SV + +P+F+ 
Sbjct: 170 KREGGTHLAGFRGALTRTLNNYMEKEGLNKKAKTNASGDDAREGLTAVISVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE+A+ +    +L++NP E+  +   +I+ +  R   RK R    R
Sbjct: 230 QTKDKLVSSEVRPAVESAMNEKLADFLLENPAESKIIAGKIIDAARAREAARKAREMTRR 289

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 KGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT 524
            A  +K+ ++Q++  L+ ALGC  
Sbjct: 350 KARFDKMLSSQEVATLITALGCGI 373


>gi|19909645|dbj|BAB87018.1| DNA gyrase subunit B [Spirillum pleomorphum]
          Length = 389

 Score =  200 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 145/401 (36%), Positives = 215/401 (53%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P  P+          G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSELLVLTVRRSGHIWEQTYVHGVPQEPMHIVGD-SETTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F+P P  F +   F+   L K  +  ++L+  V      ++   E       E F 
Sbjct: 60  TELHFKPSPLTFVNIH-FNWDILAKRLRELSFLNSGVGIVLKDERSGKE-------ELFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL+ +++    N++ ++           G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLRAFVEYLNLNKTAVNQIFHFNVQRDDGI---GVEIALQWNDSFNENLLCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GG H  G R ALTR +  Y E      K  IS   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGAHLVGFRSALTRNLNAYIEQEGLAKKHKISTTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    R
Sbjct: 229 QTKDKLVSSEVKTAVEQEMGRYFTDFLLENPAEAKAVVGKMIDAARAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR  QA+LPL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +++ ++Q++  L+ ALGC   R +Y  + LRY  +II
Sbjct: 349 RARFDRMISSQEVGTLITALGCGIGRDEYNIDKLRYHNIII 389


>gi|259018146|gb|ACV89665.1| DNA gyrase subunit B [Nocardia inohanensis]
          Length = 414

 Score =  200 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 131/420 (31%), Positives = 207/420 (49%), Gaps = 33/420 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L   V      ++Q++    P    +   +   + G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRLEAEVDTAGFHWTQEYKDAKPGKLFQ--GEATKRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK---------- 254
           T I F  DP+IF     ++   + +  Q  A+L+  +    +  +               
Sbjct: 59  TTIRFWADPEIFETTT-YNFETVARRLQEMAFLNKGLTITLTDQRVSEGDITDEVVSDTA 117

Query: 255 -------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
                            +   +++PGGL+ Y++     ++ I + I     +  G     
Sbjct: 118 EAPKHLDENAPVAEPKVKTRTYHYPGGLEDYVKHINRTKTAIHNSIVGFTGKGTGH---E 174

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SII 358
           +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++ 
Sbjct: 175 LEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKEGNLT 234

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+      I+SV + +P+F GQTKTKL + D +  V+    +   H+   NP +A  +
Sbjct: 235 GDDIREGLAAIVSVKVADPQFEGQTKTKLGNTDVKGFVQRTCNEHLTHWFEANPADAKTI 294

Query: 419 LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           ++  +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGS
Sbjct: 295 VQKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGS 354

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K
Sbjct: 355 AKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDIAKLRYHK 414


>gi|323146988|gb|ADX32787.1| DNA gyrase B subunit [endophytic bacterium 17(2011)]
 gi|323147008|gb|ADX32797.1| DNA gyrase B subunit [endophytic bacterium 28(2011)]
          Length = 236

 Score =  200 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 86/248 (34%), Positives = 131/248 (52%), Gaps = 27/248 (10%)

Query: 77  LFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEII 133
           L  EV+DN++DE +AGY N I+V +  +  +++ DNGRG+P          P +S  EI+
Sbjct: 1   LVFEVLDNSIDEALAGYCNDIQVIIHADNSISITDNGRGVPTGLKMDDKHEPKRSAAEIV 60

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP---- 189
           +T LHAGGKFD ++Y++SGGLHGVG+S VNALS  L +TV R       +F RG+P    
Sbjct: 61  MTELHAGGKFDQNSYKVSGGLHGVGVSCVNALSAWLRLTVRRDGKKHFMEFHRGVPQNRV 120

Query: 190 --------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241
                   +SP++   +  N RGT + F  D  IFG+   +    L K  +  ++L+  V
Sbjct: 121 IEEIGGIAVSPIQVVGETEN-RGTEVHFMADETIFGN-VEYHYDILAKRIRELSFLNNGV 178

Query: 242 KTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
           +   +  +   E         F F GG+K +++   + +S++   IF    EK G     
Sbjct: 179 RIRLTDQRSGKEDD-------FAFVGGVKGFVEYINKTKSVLHPTIFHVSGEKDGV---G 228

Query: 302 VEWAIAWC 309
           VE A+ W 
Sbjct: 229 VEVAMQWN 236


>gi|159146578|gb|ABW90733.1| DNA gyrase beta subunit [Vibrio chagasii]
          Length = 381

 Score =  200 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 142/391 (36%), Positives = 213/391 (54%), Gaps = 15/391 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS ++ +T+ R   I +Q +  G P +PL       ++ GT I F
Sbjct: 1   VSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYHHGEPQAPLAVIGDT-DQTGTEIRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F +   F    L K  +  ++L+  V      ++E        + + F F GG+
Sbjct: 60  WPSEETFSNVL-FHYDILAKRLRELSFLNSGVSIKLIDERE------EDKSDHFMFEGGI 112

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           + ++     N++ I  +IF    E++     TVE A+ W +     I  + N I   +GG
Sbjct: 113 QAFVDHLNTNKTPIIQKIFHFDHERED--GITVEVAMQWNDGYQENIYCFTNNIPQRDGG 170

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QTK K
Sbjct: 171 THLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQTKDK 230

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIR 445
           LVS + +  VE A+ +    +L++NP EA  +   +I+ +  R   RK      RK A+ 
Sbjct: 231 LVSSEVKSAVEQAMGEKLSEFLIENPTEAKTVCTKIIDAARARDAARKAREMTRRKGALD 290

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +
Sbjct: 291 LAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 350

Query: 506 KIRNNQQIMDLVQALGCRT-RSQYREEDLRY 535
           K+ ++Q++  L+ ALGC   R +Y  + LRY
Sbjct: 351 KMLSSQEVATLITALGCGIGRDEYNPDKLRY 381


>gi|12644438|sp|Q43947|GYRB_ACICA RecName: Full=DNA gyrase subunit B
 gi|4514407|dbj|BAA75402.1| DNA gyrase subunit B [Acinetobacter calcoaceticus]
          Length = 388

 Score =  200 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 139/400 (34%), Positives = 219/400 (54%), Gaps = 17/400 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGV +SVVNALS +LH+ ++R   +  Q++  G P  PL    +  +K G
Sbjct: 1   DNSYKVSGGLHGVSVSVVNALSSKLHLMISRAGQVHEQEYQHGDPQYPLRVIGET-DKSG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  ++   +  F+   L +  +  ++L+  V+     ++   E         + 
Sbjct: 60  TTVRFWPS-ELTFTQTIFNVEILARRLRELSFLNAGVRIVLRDERINLE-------HVYD 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   E ++ ++           G     VE A+ W E     +  + N I 
Sbjct: 112 YEGGLSEFVKYINEGKTHLNEIFHFTADTDSGI---GVEVALQWNESYQENVRCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GG+H +G R ALTRG+ +Y E      K  +++  DD       I+SV + +P+F+ 
Sbjct: 169 QKDGGSHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNR 440
           QTK KLVS + +  VE A+   F  YL++NP  A  +   +I+ +  R   RK      R
Sbjct: 229 QTKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV 
Sbjct: 289 KSALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY K+I
Sbjct: 349 RARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKII 388


>gi|27530795|dbj|BAC54045.1| DNA gyrase subunit B [Gordonia amarae]
          Length = 426

 Score =  200 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 132/430 (30%), Positives = 212/430 (49%), Gaps = 38/430 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS ++ + + R    +SQ +    P +  +       K G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTKVELEIKRDGHNWSQTYLNAEPQTLHQ--GAATRKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG-------- 256
           T   F PDP+IF +   F+A  + +  Q  A+L+  +    + ++  A +          
Sbjct: 59  TTTRFWPDPQIFTETTRFNAETVARRLQEMAFLNKGLTITLTDNRPQAVEVPGDPNGDGP 118

Query: 257 ----------------------IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
                                  P+   +++  GL  Y++    N+   +    +     
Sbjct: 119 APGGTEIAEAVQSETEKAAAVTKPKTRTYHYAEGLVDYIKHI--NKRSKAPIHQSVIGFA 176

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
                  VE A+ W +     I ++ NTI T EGG+HE G R ALT  + KYA   +   
Sbjct: 177 GKGTGHEVEIAMQWNDGYSESIHTFANTINTHEGGSHEEGFRAALTSTVNKYAADKKLMK 236

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           ++   +  DD+      ++SV + +P+F GQTKTKL + + +  V+    +   H+   N
Sbjct: 237 EKDGKLTGDDIREGLAAVISVKVSDPQFEGQTKTKLGNTEVKGFVQKVCNEHLAHWFEAN 296

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P EA  +++  ++ ++ R   RK R+ V RKTA     LPGKLADC  N     E++IVE
Sbjct: 297 PAEAKVIIKKAVDSAQARAAARKARDLVRRKTATDIGGLPGKLADCRSNDPALCEVYIVE 356

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530
           GDSAGGSAK  R+   QA+LP+RGKI+NV  A  +++  N ++  ++ A G     ++  
Sbjct: 357 GDSAGGSAKSGRDSMYQAILPIRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDI 416

Query: 531 EDLRYEKVII 540
             LRY K+++
Sbjct: 417 AKLRYHKIVL 426


>gi|157073795|dbj|BAF79896.1| gyrase B [Methylobacterium mesophilicum]
          Length = 399

 Score =  200 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 144/408 (35%), Positives = 219/408 (53%), Gaps = 21/408 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS  L + + R     + +F  G  ++PLE       +RG
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSSFLKLRIWRNGMEHAMEFRHGDAVAPLEIVGPGEGRRG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF P    F     FD   L K  +  A+L+  V+   +  +    K      EE Y
Sbjct: 61  TEVTFLPSTNTFT-MIEFDYGTLEKRLRELAFLNSGVRIVLTDARHAEHKR-----EELY 114

Query: 265 FPGGLKTYLQTKLENRSLIS--SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           + GG++ +++    +R  I   +     + E++G     VE A+ W +     +  + N 
Sbjct: 115 YEGGIEAFVRYLDRSRKPIEGMASPVVVRAEREGI---RVEVALWWNDSFNETVLPFTNN 171

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R ALTR I  YA+ +    +  +S+  +D       ++SV + +P+F
Sbjct: 172 IPQRDGGTHMAGFRAALTRQITGYADSSGVSKREKVSLTGEDCREGLTAVISVQVPDPKF 231

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV- 438
           + QTK KLVS + +  VEN L +    +L +NP +A  ++  V+  +  R   RK RE  
Sbjct: 232 SSQTKDKLVSSEVRPAVENVLNEGLSTWLEENPQQARSVMGKVVLAASAREAARKARETV 291

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +      E+ +VEGDSAGGSAKQ R+R+ QAVLPLRGKILN
Sbjct: 292 TRKGALDIASLPGKLADCQERDPSKCEILLVEGDSAGGSAKQGRDRAFQAVLPLRGKILN 351

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVII 540
           V    ++++ ++ +I  L+ ALG         R  +  E LRY ++II
Sbjct: 352 VERVRADRMLSSAEIGTLITALGAGIGRSSTDREGFNPEKLRYHRIII 399


>gi|110612685|gb|ABG78305.1| GyrB [uncultured bacterium]
          Length = 393

 Score =  200 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 136/403 (33%), Positives = 206/403 (51%), Gaps = 13/403 (3%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FDN+TY++SGGLHGVG+SVVNALS+ L + + ++   F Q + +G P SPL       ++
Sbjct: 1   FDNNTYKVSGGLHGVGVSVVNALSETLLLDIDQKGQHFHQVYRKGAPDSPLAVTG-SSDR 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT I F PD  I      F    L    +  ++L+  +    + ++ + E         
Sbjct: 60  TGTAIRFYPDLTIMETD-QFSYDVLAHRFRELSFLNPSLTITLAEEETLRE-------SV 111

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
           F+  GG++++L    EN+ ++   +F  K  + G     + +      +   + SY N I
Sbjct: 112 FHDEGGIRSFLSFVNENKRVLHEPLFFRKVLENGAT-FEISFQYQDTTDAETLLSYVNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T EGG+H  G R ALT+ + ++       +   +  +D+      I+S+ I  P+F GQ
Sbjct: 171 PTREGGSHVRGFRSALTKVVNRFIRDKNLNKGEEVKGEDIREGLSAIVSIKIPNPQFEGQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TK KL S      +E  L +  +    +    A  + +  I  ++ R   RK RE   RK
Sbjct: 231 TKAKLGSSWVAGAMETFLSESLEDAFEKQGAIARAIADKAILSAQAREAARKARELTKRK 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC +N    +EL+IVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  
Sbjct: 291 NVLEGSNLPGKLADCQENDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKGKILNVER 350

Query: 502 AG-SEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMT 542
               EK   + ++   + A+GC    +      LRY K+IIMT
Sbjct: 351 TKGVEKFITHDEVRAPITAVGCGLGDEDFSLKNLRYHKIIIMT 393


>gi|283132387|dbj|BAI63599.1| DNA gyrase subunit B [Leptospira genomosp. 1 serovar Pingchang]
          Length = 391

 Score =  200 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 134/397 (33%), Positives = 217/397 (54%), Gaps = 11/397 (2%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS+ L V V ++   ++QK+ +GIP+SP+E K      RGT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSEYLIVEVHQKGKFYTQKYEKGIPVSPVEMKGDSSE-RGTIV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PD  IF     F    L    +  A+L+  +       +  +E   +   E F F G
Sbjct: 60  RFKPDASIFTTV-DFQFDVLSARFRELAFLNKGLVLIVEDRRRGSEGENLLRNE-FQFSG 117

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEG 327
           G+ ++++   EN+  +   I   + +       +++++  + E    I  + N I  + G
Sbjct: 118 GIVSFVEHINENKHPMHKVIHFERNKDDVLAEISIQYSETYTES---IFCFTNNINNNLG 174

Query: 328 GTHESGLRVALTRGIKKYAELT---QNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GTH  G R ALTR +  + +       K    +  +D+      ++S+ I +P+F  QTK
Sbjct: 175 GTHLEGFRAALTRTLNDFLKKDTVLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTK 234

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
            KLV+ + +  ++    +    +  +NP    K+LE  I  ++ R   RK R+   RKT 
Sbjct: 235 EKLVNAEIKGIMQTLTSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTV 294

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC++     +E+++VEGDSAGGSAKQ R+R+ QA+LPL+GKILNV  A 
Sbjct: 295 LEGGGLPGKLADCAEKDPALSEIYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKAR 354

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            +KI ++++I  LV ALG      ++  + +RY K++
Sbjct: 355 LDKILSSEEIRVLVSALGTGIGEDEFNIDKIRYHKIM 391


>gi|19909617|dbj|BAB87004.1| DNA gyrase subunit B [Oceanospirillum beijerinckii]
          Length = 387

 Score =  200 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 138/399 (34%), Positives = 211/399 (52%), Gaps = 17/399 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS++L +TV R   +  Q +  G+P  PL    +      T 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKLTLTVWRSGKVHEQVYIHGVPQEPLRVIGETTKTG-TE 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
             F P  + F +   F    L K  +  ++L+  V      ++         + + F + 
Sbjct: 60  TRFHPSAETFSNI-EFHYDILAKRLRELSFLNSGVSIILIDER-------TGKSDNFKYE 111

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GGL  +++   +N++ ++S        + G     VE A+ W +     I  + N I   
Sbjct: 112 GGLSAFVEYLNQNKTALNSVFHFSSEREDGV---GVEVALQWNDSYQENIYCFTNNIPQR 168

Query: 326 EGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QT
Sbjct: 169 DGGTHLAGFRAALTRTLNSYMEQDPKIKKDKVNTSGDDAREGLTAIVSVKVPDPKFSSQT 228

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKT 442
           K KLVS + +  VE  +      YL +NP EA  ++  ++E +  R   RK R    RK 
Sbjct: 229 KDKLVSSEVKTAVEQEMGRLLSDYLQENPNEAKSIVNKMLEAARAREAARKAREMTRRKG 288

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A
Sbjct: 289 ALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKTQAILPLKGKILNVEKA 348

Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
             +K+ ++ ++  L+ A+GC   R ++  + LRY  +II
Sbjct: 349 RFDKMLSSAEVGTLITAMGCGIGREEFNPDKLRYHSIII 387


>gi|48596890|dbj|BAD22773.1| DNA gyrase subunit B [Photobacterium indicum]
          Length = 387

 Score =  200 bits (508), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 142/397 (35%), Positives = 223/397 (56%), Gaps = 15/397 (3%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS+++ +T+ R  +I  Q +  G+P  PLE   +  +K GTRI 
Sbjct: 1   KVSGGLHGVGVSVVNALSEKVELTINRHGSIHHQIYHHGVPDKPLEAIGET-DKTGTRIR 59

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F P    F +   F    L K  +  ++L+  V      ++E        +++ F + GG
Sbjct: 60  FWPSEDTFTNVV-FHYEILAKRLRELSFLNSGVSIRLIDERE------EGKQDHFMYEGG 112

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           +K +++    N++ I S++F    E++     +VE A+ W +     I  + N I   +G
Sbjct: 113 IKAFVEHLNRNKTPIHSKVFHFDFERED--GISVEVAMQWNDGFQEGIYCFTNNIPQRDG 170

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           G+H +G R ALTR +  + +      K   S   DD       ++SV + +P+F+ QTK 
Sbjct: 171 GSHLAGFRGALTRTLNTFMDKEGYSKKEKTSTSGDDAREGLTAVVSVKVPDPKFSSQTKD 230

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAI 444
           KLVS + +  VE+A+ +    +L++NP +A  +   +I+ S  R   RK R    RK A+
Sbjct: 231 KLVSSEVKPAVESAMNEKLSEFLLENPSDAKIVCSKIIDASRAREAARKAREMTRRKGAL 290

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC +     + L+IVEGD+AGGSAKQ RNR NQA+LPL+GKILNV  A  
Sbjct: 291 DLAGLPGKLADCQEKDPALSVLYIVEGDAAGGSAKQGRNRKNQAMLPLKGKILNVEKARF 350

Query: 505 EKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
           +K+ ++Q++  L+ A+GC   R +Y  + LR   ++I
Sbjct: 351 DKMLSSQEVATLITAMGCGIGRDEYNPDKLRDHNIVI 387


>gi|317420183|emb|CBW30251.1| gyrase B subunit [Pseudoalteromonas arctica]
          Length = 381

 Score =  200 bits (508), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 137/390 (35%), Positives = 216/390 (55%), Gaps = 16/390 (4%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS++L +TV R+  +  Q ++ G+P +PL    +  +  GT + F P  + 
Sbjct: 1   GVGVSVVNALSEKLKLTVRREGKLHEQFYTMGVPDAPLAVIGE-SDTTGTELRFWPSGET 59

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   F    L K  +  ++L+  V    + ++E        + + F + GG++ +++ 
Sbjct: 60  FTNL-DFHYEILAKRLRELSFLNSGVSIILNDERE------ENKSDHFKYEGGIQAFVEY 112

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              N++ I   +F    E++     +VE ++ W +     I  + N I   +GGTH +G 
Sbjct: 113 LNRNKTPIHKGVFHFTHERE-EDGISVEVSMQWNDAYQENIYCFTNNIPQRDGGTHLAGF 171

Query: 335 RVALTRGIKKYA----ELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           R ALTR +  Y        + K   +   DD       ++SV + +P+F+ QTK KLVS 
Sbjct: 172 RSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSS 231

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRL 449
           + +  VE A+ + F  +L++NP +A  ++  +I+ S  R   RK R    RK A+    L
Sbjct: 232 EVKSAVEQAMAEKFTEFLLENPTDAKIVVGKIIDASRAREAARKAREMTRRKGAMDLAGL 291

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ +
Sbjct: 292 PGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLS 351

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
           +Q++  L+ ALGC   R +Y  E LRY ++
Sbjct: 352 SQEVATLITALGCGIGRDEYNPEKLRYHRI 381


>gi|308153072|dbj|BAJ22125.1| DNA gyrase subunit B [Gordonia rubripertincta]
          Length = 422

 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 131/427 (30%), Positives = 206/427 (48%), Gaps = 38/427 (8%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y +SGGLHGVGISVVNALS ++ + +      + Q +S   P    +       K GT
Sbjct: 1   DAYAVSGGLHGVGISVVNALSTKVELEIENDGFHWEQTYSYAKPGPLEK--GDATRKTGT 58

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG--------- 256
            + F PDP IF +   F+A  + +  Q  A+L+  +    +  +  A +           
Sbjct: 59  TVRFWPDPDIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEPPGDANGDEDA 118

Query: 257 --------------------IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG 296
                                P+   +++P GL  Y++     +  I + +     + +G
Sbjct: 119 PATDVAEAVQTETEKAAAATKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGFSAKGEG 178

Query: 297 THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKR 353
                VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++
Sbjct: 179 H---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLIKEK 235

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
              +  DD+      ++S  + +P+F GQTKTKL + + +  V+    +   H+   NP 
Sbjct: 236 DGKLTGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEANPA 295

Query: 414 EATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
           EA  +++   + ++ R+  R+    V RKTA     LPGKLADC  N     E++IVEGD
Sbjct: 296 EAKIIVKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGD 355

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           SAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    
Sbjct: 356 SAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDIAK 415

Query: 533 LRYEKVI 539
           LRY K++
Sbjct: 416 LRYHKIV 422


>gi|259018158|gb|ACV89671.1| DNA gyrase subunit B [Nocardia fluminea]
 gi|259018202|gb|ACV89693.1| DNA gyrase subunit B [Nocardia salmonicida]
 gi|294847488|gb|ADF43754.1| DNA gyrase subunit B [Nocardia cummidelens]
          Length = 415

 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 129/421 (30%), Positives = 206/421 (48%), Gaps = 34/421 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS ++ V +      ++Q +    P    +   +     G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTKVEVEIDVDGYHWTQTYKDAKPGKLAQ--GEATKATG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T + F  DP IF     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTVRFWADPDIFETTT-YNFETVARRLQEMAFLNKGLTIKLTDERVAVGDVIDEVVSETA 117

Query: 250 ---------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                             +   +++PGGL  +++     +S I + +     +  G    
Sbjct: 118 EAPKDAEVVAAEAAEHKVKTRTYHYPGGLVDFVRHINRTKSAIHNSVVGYTVKGTGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SI 357
            +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++
Sbjct: 175 ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKEKKLLKEKDGNL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  
Sbjct: 235 TGDDIREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRACNEHLQHWFEANPADAKT 294

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           +++  +  ++ R+  RK RE V RK+A     LPGKLADC        E++IVEGDSAGG
Sbjct: 295 IVQKAVSSAQARMAARKARELVRRKSATDLGGLPGKLADCRSKDPGKCEIYIVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY 
Sbjct: 355 SAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYH 414

Query: 537 K 537
           K
Sbjct: 415 K 415


>gi|148291140|emb|CAN84516.1| DNA gyrase B subunit [Brucella microti CCM 4915]
 gi|148291142|emb|CAN84517.1| DNA gyrase B subunit [Brucella microti]
          Length = 386

 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 133/387 (34%), Positives = 207/387 (53%), Gaps = 12/387 (3%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS  L + + R   I    F+ G+  +PL       ++ GT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTE 60

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           ++F P P  F     FD   L +  +  A+L+  V+   +  +    K         ++ 
Sbjct: 61  VSFLPSPDTFS-MVEFDYETLERRLRELAFLNSGVRIKLADRRHADVKEQE-----LHYD 114

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GGL  +++   +++  +  E    ++EK G    TVE A+ W +    ++  + N I   
Sbjct: 115 GGLVEFVKYIDQSKKSLLEEPIYIRSEKDG---MTVEVAMWWNDSYHEKVLCFTNNIPQR 171

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R ALTR I  YA+ +    K  + +  DD       +LSV + +P+F+ QT
Sbjct: 172 DGGTHLAGFRGALTRQITGYADSSGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQT 231

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443
           K KLVS + +  VE  + +    +L ++P     ++E VI+ +  R   RK R++ RK+ 
Sbjct: 232 KDKLVSSEVRPVVEGLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDITRKSN 291

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +     +E+FIVEGDSAGGSAK  R+R NQA+LPLRGKILNV    
Sbjct: 292 LSVTSLPGKLADCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVR 351

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYRE 530
            +++ ++ Q+  L+ ALG         
Sbjct: 352 FDRMISSDQVGTLITALGTSIGKDETH 378


>gi|198042672|gb|ACH81161.1| GyrB [Alteromonas sp. UST981101-018]
          Length = 373

 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 134/380 (35%), Positives = 207/380 (54%), Gaps = 15/380 (3%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS  L + + R      Q++  G+P +PL       +K GT I 
Sbjct: 1   KVSGGLHGVGVSVVNALSSRLKLRIRRGGKAHEQEYHHGVPQAPLAVTGDT-DKTGTMIR 59

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F P    F D   +    L K  +  ++L+  V      +++  E       + F + GG
Sbjct: 60  FWPSSDTFTDTL-YHYDILAKRLRELSFLNSGVSIRLKDERDGKE-------DHFMYEGG 111

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           ++ +++   E ++ +  ++F   +E++      VE A+ W +     +  + N I   +G
Sbjct: 112 IQAFVEYLNEKKTPVHQKVFHFASEQED--GIAVEVAMQWNDSFQENVFCFTNNIPQRDG 169

Query: 328 GTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH +G R ALTR +  Y E      K   +   DD       ++SV + +P+F+ QTK 
Sbjct: 170 GTHLAGFRGALTRTLNNYMEKEGLNKKAKTNASGDDAREGLTAVISVKVPDPKFSSQTKD 229

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAI 444
           KLVS + +  VE+A+ +    +L++NP E+  +   +I+ +  R   RK R    RK A+
Sbjct: 230 KLVSSEVRPAVESAMNEKLADFLLENPAESKIIAGKIIDAARAREAARKAREMTRRKGAL 289

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  
Sbjct: 290 DLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARF 349

Query: 505 EKIRNNQQIMDLVQALGCRT 524
           +K+ ++Q++  L+ ALGC  
Sbjct: 350 DKMLSSQEVATLITALGCGI 369


>gi|270155334|gb|ACZ62713.1| DNA gyrase B [Paenibacillus sp. KUDC1047]
          Length = 375

 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 141/386 (36%), Positives = 206/386 (53%), Gaps = 15/386 (3%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+++ VTV R   ++ Q++ RG P   L+       + GT +TF P
Sbjct: 1   GGLHGVGVSVVNALSEKVVVTVKRDGHMYQQEYRRGAPQYDLKTIG-TAEETGTTVTFHP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           DP+IF +   +D   LL   +  A+L+  +    + ++             F + GG+  
Sbjct: 60  DPEIFTETTVYDYETLLTRIRELAFLNKGIGLTLTDER-------TGATNSFLYEGGIIE 112

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           Y+    + R ++       +  +       VE A+ + +     I S+ N I T EGGTH
Sbjct: 113 YVSFLNQKREVLHENPIYVEGSRDNIQ---VEVALQYNDNFTENIYSFANNINTHEGGTH 169

Query: 331 ESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           ESG + ALTR I  YA      +    ++  DD+      I+SV I EP+F GQTKTKL 
Sbjct: 170 ESGFKSALTRIINDYARKAGVIKDSTGNLSGDDVREGLTAIISVKIPEPQFEGQTKTKLG 229

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447
           + + +  VE+   +    +L +NP  + ++LE  ++ +  R   RK RE   RK A+   
Sbjct: 230 NSEVRGIVESLFAEKLQEFLEENPSVSRRILEKGLQAARAREAARKARELTRRKGALEVS 289

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADCS   A  +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  ++I
Sbjct: 290 SLPGKLADCSSKDASISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDRI 349

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDL 533
             N +I  ++ A+G      +     
Sbjct: 350 LGNAEIRAIITAMGTGIGDDFDISKA 375


>gi|254055411|gb|ACT64305.1| GryB [Pectobacterium carotovorum]
          Length = 364

 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 127/373 (34%), Positives = 201/373 (53%), Gaps = 14/373 (3%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS++L + + R   +  Q +  G+  +PL    +  N+ GT + F P  + 
Sbjct: 1   GVGVSVVNALSEKLKLVIHRDGKLHEQTYKHGVAQAPLAVTGET-NRTGTTVRFWPSHET 59

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   F+   L K  +  ++L+  V      ++E        + + +++ GG+K ++  
Sbjct: 60  FTNVVEFEYEILAKRLRELSFLNSGVSIRLIDEREKD------KADHYHYEGGIKAFVDY 113

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              N++ I   +F     K       VE A+ W +     I  + N I   +GGTH +G 
Sbjct: 114 LNRNKTPIHPNVFYFSMTKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGF 170

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R A+TR +  Y +      K  IS   DD     + ++SV + +P+F+ QTK KLVS + 
Sbjct: 171 RAAMTRTLNNYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEV 230

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPG 451
           +  VE+ + +    YL++NP +A  ++  +I+ +  R   RK      RK A+    LPG
Sbjct: 231 KTAVESLVNEKLVDYLMENPSDAKIVVGKIIDAARAREAARKARDMTRRKGALDLAGLPG 290

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q
Sbjct: 291 KLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 350

Query: 512 QIMDLVQALGCRT 524
           ++  L+ ALGC  
Sbjct: 351 EVATLITALGCGI 363


>gi|297515923|gb|ADI44312.1| gyrase B [Micromonospora sp. RTIII77]
          Length = 371

 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 119/378 (31%), Positives = 195/378 (51%), Gaps = 10/378 (2%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS  + V + +   ++ Q ++   P    +   +  N  G+ ++F 
Sbjct: 1   SGGLHGVGVSVVNALSTRMFVEIQKDGYVWRQSYTNSKPSPLEK--GETTNTTGSSVSFW 58

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PDP +F     F    + +  Q  A+L+  +      ++ + E+ G P +  F +  G+ 
Sbjct: 59  PDPSVFETV-DFAFETIYRRIQEYAFLNRGLTIQLRDER-VQEEDGKPREVTFCYKNGIS 116

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++    +++ I   +     E++G    +VE A+ W E     + ++ NTI T EGGT
Sbjct: 117 DFVRHLNASKNPIHKTVVEFGAEEEG---MSVEIAMQWNESYGESVYTFANTINTHEGGT 173

Query: 330 HESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           HE G R ALT  + +Y    +  K    +  +D+      I+SV +  P+F GQTKTKL 
Sbjct: 174 HEEGFRAALTSVVNRYGADKKLLKSDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLG 233

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKL 447
           +   +  V+    +    +  +NP EA  ++ +           ++ ++   RK+ +   
Sbjct: 234 NTPVKSFVQRVCNEWLVDWFDRNPGEAKLIITKATQAARARIAAQQARKLARRKSLLESG 293

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++
Sbjct: 294 SMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRV 353

Query: 508 RNNQQIMDLVQALGCRTR 525
             N ++  L+ ALG    
Sbjct: 354 LKNNEVQALITALGTGIH 371


>gi|281486937|gb|ADA71016.1| DNA gyrase subunit B [Aeromonas hydrophila]
          Length = 374

 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 141/386 (36%), Positives = 214/386 (55%), Gaps = 16/386 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P P IF D   F    L K  +  ++L+  V      +++  E         F + GG+K
Sbjct: 60  PSPTIFSDTL-FHYEILAKRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIK 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I  ++F   TE+ G+    VE A+ W +     +  + N I   +GGT
Sbjct: 112 AFVEYLNQNKTPIHPKVFHFTTEQDGS---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QT+ KL
Sbjct: 169 HLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTEDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
           VS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+  
Sbjct: 229 VSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDI 288

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 289 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 348

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED 532
           + ++Q++  L+ ALGC         D
Sbjct: 349 MISSQEVGTLITALGCGIGRDEYNPD 374


>gi|188076212|gb|ACD47156.1| DNA gyrase subunit B [Alcanivorax hongdengensis]
          Length = 371

 Score =  200 bits (508), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 135/379 (35%), Positives = 203/379 (53%), Gaps = 17/379 (4%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS+EL +T+ R   +  Q ++ G+P  PL       +  GT + FRP  + 
Sbjct: 2   GVGVSVVNALSEELKLTIRRNGQVHEQIYNHGVPAKPLAVVG-TTDSSGTAVHFRPSAET 60

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   F    L K  +  ++L+  V+     ++   E       + F + GGL  ++  
Sbjct: 61  FSNI-KFHYDILAKRLRELSFLNSGVRIHLKDERSGEE-------DVFEYEGGLAAFVSF 112

Query: 276 KLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
             EN++ ++       + E+ G     VE A+ W +     I  + N I   +GGTH +G
Sbjct: 113 LNENKTPLNQVFHFQFEREEDGI---GVEVAMQWNDSYQENIFCFTNNIPQRDGGTHLAG 169

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD       ++SV + +P+F+ QTK KLVS +
Sbjct: 170 FRAALTRTLNNYMDKEGLLKKEKANPTGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSE 229

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLP 450
            +  VE  + + F  YL++NP EA  + + +I+ +  R   RK RE+  RK A+    LP
Sbjct: 230 VKGAVEQTMGELFQDYLLENPAEARSITQKIIDAARPRDAARKAREMTRRKGALDIAGLP 289

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC Q     +EL+IVEGDSAGGSAKQ R+R NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 290 GKLADCQQKDPAQSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSS 349

Query: 511 QQIMDLVQALGCRTRSQYR 529
           Q++  L+ ALGC       
Sbjct: 350 QEVGTLITALGCGIGRDEY 368


>gi|148971435|gb|ABR20255.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 424

 Score =  200 bits (508), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 129/434 (29%), Positives = 208/434 (47%), Gaps = 19/434 (4%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD  TY++SGGLHGVG+S VNALS  L V V +    ++  F+RG  +
Sbjct: 1   EVIMTVLHAGGKFDKDTYKVSGGLHGVGVSCVNALSKALDVNVCKGGHEYTISFARGKVV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL+K  + +  RGT ++F PD +IF     +D   +    +  A+L+  ++  +  ++ 
Sbjct: 61  APLKKLGESKK-RGTTVSFIPDEQIFSV-TTYDYETIYNRLRELAFLNKGLEIIFKDERN 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWC 309
                 +     F   GG+ +++Q   E ++ +  +    K  K+        E A+   
Sbjct: 119 TDHAEAV-----FNAEGGVVSFVQFLNETKTPLFQDPIYIKGTKELHDGTLEFEVAMQCT 173

Query: 310 EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGI 369
           +    I      + T      E   ++     ++ Y+         S      +   + +
Sbjct: 174 K---LILKQSFLMSTTLLQDREGPTKLDFQLLLQGYSIPISKIILFSRTQSLRLRGMMFV 230

Query: 370 LSVFIREPE------FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE-WV 422
                   +         +     V  D     +  + + F  YL + P  A  +++   
Sbjct: 231 REWQQSSLQRSLIPSLRDKLSKSSVMGDVGSAAQQIVGEEFATYLEERPSIAKIIVDKAA 290

Query: 423 IERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           +        R+ +    RK+ +   RLPGKL DCS+      E++IVEGDSAGGSAK  R
Sbjct: 291 LAAQAREAARKARELSKRKSVLDSARLPGKLTDCSERDPAKCEIYIVEGDSAGGSAKGGR 350

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIM 541
           +R  QA+LP+RGKILNV  +  +K+  N ++  ++ A GC         E LRY K+I+M
Sbjct: 351 DRRFQAILPIRGKILNVEKSRLQKVLQNTEVGSMISAFGCGIGKDGFNLEKLRYHKIILM 410

Query: 542 TDADVDGAHIASLL 555
           TDADVDG+HI +LL
Sbjct: 411 TDADVDGSHIRTLL 424


>gi|259018190|gb|ACV89687.1| DNA gyrase subunit B [Nocardia alba]
          Length = 415

 Score =  200 bits (508), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 130/421 (30%), Positives = 206/421 (48%), Gaps = 34/421 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS ++ V +      +SQ +    P    +   +     G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTKVEVEIDVDGYHWSQTYKDAKPGKLAQ--GEATKATG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T + F  DP IF     ++   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTVRFWADPDIFETTT-YNFETVARRLQEMAFLNKGLTIKLTDERVAVGDVIDEVVSETA 117

Query: 250 ---------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                             +   +++PGGL  +++     +S I + +     +  G    
Sbjct: 118 EAPKDAEVVAAEAAEHKVKTRTYHYPGGLVDFVRHINRTKSAIHNSVVGYTVKGTGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SI 357
            +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++
Sbjct: 175 ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKEKKLLKEKDGNL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  
Sbjct: 235 TGDDIREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRACNEHLQHWFEANPADAKT 294

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           +++  +  ++ R+  RK RE V RK+A     LPGKLADC        E++IVEGDSAGG
Sbjct: 295 IVQKAVSSAQARMAARKARELVRRKSATDLGGLPGKLADCRSKDPGKCEIYIVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY 
Sbjct: 355 SAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYH 414

Query: 537 K 537
           K
Sbjct: 415 K 415


>gi|13359140|dbj|BAB33301.1| DNA gyrase B subunit [Marinobacterium georgiense]
 gi|13359142|dbj|BAB33302.1| DNA gyrase B subunit [Marinobacterium georgiense]
          Length = 387

 Score =  200 bits (507), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 145/399 (36%), Positives = 216/399 (54%), Gaps = 17/399 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           TY++SGGLHGVG+SVVNALS EL +T+ R   +  Q +  G+P  PL    +  +  GT 
Sbjct: 1   TYKVSGGLHGVGVSVVNALSSELKLTIRRAGQVHEQIYHHGVPEVPLRVVGET-DLTGTI 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F+P  + F +   F    L K  +  ++L+  V+     ++   E       E F + 
Sbjct: 60  VRFKPSEETFTNI-SFQYDILAKRLRELSFLNSGVRIRLKDERSGRE-------EVFEYE 111

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTD 325
           GGL  +++   +N+S I+         + G     VE A+ W +   E    + N I   
Sbjct: 112 GGLAAFVEFLNQNKSPINKIFHFNTMHENGV---GVEVAMQWNDGFQEGLHCFANNIPQR 168

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH SG R ALTR +  Y E  Q  +   +S   DD     V I+SV + +P+F+ QT
Sbjct: 169 DGGTHLSGFRAALTRCLNSYIESEQLNKNGKVSTSGDDSREGLVAIISVKVPDPKFSSQT 228

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKT 442
           K KLVS + +  VE  +    + YL++NP +A  +++ +I+ +  R   RK R    RK 
Sbjct: 229 KDKLVSSEVKTAVEQLMASELNAYLLENPQDAKAVVQKMIDAARAREAARKAREMTRRKG 288

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A
Sbjct: 289 ALDVAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKA 348

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVII 540
             +K+  + ++  L+ ALGC    +    + LRY  +II
Sbjct: 349 RFDKMLTSAEVGTLITALGCGIGREEFNADKLRYHSIII 387


>gi|255553522|ref|XP_002517802.1| DNA topoisomerase II, putative [Ricinus communis]
 gi|223543074|gb|EEF44609.1| DNA topoisomerase II, putative [Ricinus communis]
          Length = 1212

 Score =  200 bits (507), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 84/378 (22%), Positives = 155/378 (41%), Gaps = 24/378 (6%)

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIRE 376
           S+ N+I T +GGTH   +   ++  +     + +  +  +I +  +       ++  I  
Sbjct: 22  SFVNSIATIKGGTHVDYVTSQISNYL--VGVVNKKNKNANIKAHHVKNYLWVFVNALIDN 79

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P F  QTK  L    +    +  L + F   + +     + +LE ++  ++ +  +  ++
Sbjct: 80  PAFDSQTKETLTLRQSNFGSKCELPEDFLKKVAK-----SDILENLLSWAKFKNDKELKK 134

Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSA------GGSAKQARNRSNQAVL 490
               K     +       +     +H   L + EGDSA      G  A     R    V 
Sbjct: 135 TDGTKRGRVNIPKLEDANEAGTKNSHKCTLILTEGDSAKTLAISGLGALPQDVRDLYGVF 194

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGA 549
           PLRGK+LNV  A  +++  N++I  + + LG +   QY     LRY  ++IMTD D DG+
Sbjct: 195 PLRGKLLNVREATPKQLNENKEIESIKKILGLQQNKQYDSVKPLRYGHLMIMTDQDYDGS 254

Query: 550 HIASLLLTFFYQEMYDLIEQK-HLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKH 607
           HI  LL+ F Y     L++    L     P+ + T +  K +  +         E    +
Sbjct: 255 HIKGLLINFIYYFWPSLLKIPSFLVEFITPIVKATHRSGKILSFYTMPEYYSWKESLMGN 314

Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667
             G   I  +KGLG     +  +   D +K     V +N+        + + +K    K 
Sbjct: 315 ANG-WTIKYYKGLGTNDKKEGMQYFRDIDKHQKDFVWMNE--EDGTAIELAFSK---KKV 368

Query: 668 DERFKFIQ--ERASFIDD 683
           DER  +++  +  + ++ 
Sbjct: 369 DERKNWLRHFQPGTHLEQ 386


>gi|218670344|ref|ZP_03520015.1| DNA topoisomerase IV subunit B [Rhizobium etli GR56]
          Length = 140

 Score =  200 bits (507), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 82/142 (57%), Positives = 110/142 (77%), Gaps = 3/142 (2%)

Query: 544 ADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEE 603
           ADVDGAHIASLL+TFFYQEM +L+   HLFL  PPL++ITQG KS YA D+ H+ ++++ 
Sbjct: 1   ADVDGAHIASLLITFFYQEMPELVRGGHLFLAVPPLYKITQGAKSAYARDDNHRAELMQT 60

Query: 604 FKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLM 663
             K GK K+EISRFKGLGEM+ +QLKET MD +KRTLLRV I++     + T+ +++ LM
Sbjct: 61  EFK-GKAKVEISRFKGLGEMMPAQLKETTMDPSKRTLLRVLIDEV--DFEGTRSAVDDLM 117

Query: 664 GTKADERFKFIQERASFIDDVG 685
           GTK + RF+FIQERA+F +++ 
Sbjct: 118 GTKPEARFRFIQERAAFAENLD 139


>gi|306451389|gb|ADM88870.1| DNA gyrase subunit B [Sphaerotilus natans subsp. sulfidovorans]
 gi|306451391|gb|ADM88871.1| DNA gyrase subunit B [Sphaerotilus natans subsp. sulfidovorans]
          Length = 387

 Score =  200 bits (507), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 135/392 (34%), Positives = 206/392 (52%), Gaps = 23/392 (5%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL-----------SPLEKKEK 198
           +SGGLHGVG+S VN LS  L +TV R   +    F +G+P            +   +   
Sbjct: 1   VSGGLHGVGVSCVNGLSKWLRLTVRRDGRVHQIDFRKGVPQDRVIELRDGVETSPMRVTG 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +KRGT + F PD +IF     F    L K  +  ++L+  VK     ++         
Sbjct: 61  ETDKRGTEVHFLPDTEIFQQNNEFHYDILAKRLRELSFLNNGVKIRLVDER------NGG 114

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK--KGTHRGTVEWAIAWCEEN-PEI 315
           +++ F + GG+K +++   + + ++   IF    EK         VE A+ W +     +
Sbjct: 115 KEDNFAYAGGVKGFVEFVNKGKKVLHPNIFHAVGEKPSDQGTTIGVEVAMQWNDAFSESV 174

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +GLR A+TR I KY E      K  + I  +D+      ++SV 
Sbjct: 175 LCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEDNDIAKKAKVEISGEDMREGLACVVSVK 234

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + EP+F+ QTK KLVS + +  VE+ +      +L++NP +A  +   +++ +  R   R
Sbjct: 235 VPEPKFSSQTKDKLVSSEVRAPVEDIVSRLLTDWLLENPTDAKTICGKIVDAARARDAAR 294

Query: 434 KQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           K RE+ R+   +  L LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPL
Sbjct: 295 KAREMTRRKGVLDGLGLPGKLADCQEKDPTLCEIYIVEGDSAGGSAKQGRDRKFQAILPL 354

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           RGKILNV  A  EK+ ++ +I+ L+ ALG   
Sbjct: 355 RGKILNVERARYEKLLSSNEILTLITALGTGI 386


>gi|314940667|gb|ADT64459.1| DNA gyrase subunit B [Ochrobactrum ciceri]
          Length = 376

 Score =  200 bits (507), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 132/384 (34%), Positives = 210/384 (54%), Gaps = 12/384 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D ++Y++SGGLHGVG+SVVNALS  L + + R   I    F+ G+  +PL        + 
Sbjct: 1   DQNSYKVSGGLHGVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGGET 60

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT ++F P P+ F     FD   L +  +  A+L+  V+   +  +              
Sbjct: 61  GTEVSFLPSPETFS-MVEFDFDTLERRLRELAFLNSGVRIKLADRRHADLVEHE-----L 114

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           ++ GGL  +++   +++  +  E    ++EK G    TVE A+ W +    ++  + N I
Sbjct: 115 HYDGGLVEFVKYIDQSKKPLLEEPIYIRSEKDG---MTVEVAMWWNDSYHEKVLCFTNNI 171

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  YA+ +    K  +++  DD       +LSV + +P+F+
Sbjct: 172 PQRDGGTHLAGFRGALTRQVTGYADASGMTKKEKVTLTGDDCREGLTAVLSVKVPDPKFS 231

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
            QTK KLVS + +  VE+ + +    +L ++P     ++E VI+ +  R   RK R++ R
Sbjct: 232 SQTKDKLVSSEVRPVVESLVNEALSTWLEEHPAGGKAVVEKVIQAAAAREAARKARDITR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+ +    LPGKLADC +     +E+FIVEGDSAGGSAK  R+R NQA+LPLRGKILNV 
Sbjct: 292 KSNLSVTSLPGKLADCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT 524
               +++ ++ Q+  L+ ALG   
Sbjct: 352 RVRFDRMISSDQVGTLITALGTSI 375


>gi|307592550|gb|ADN65363.1| DNA gyrase subunit B [Chryseobacterium haifense]
          Length = 240

 Score =  200 bits (507), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 95/241 (39%), Positives = 154/241 (63%), Gaps = 7/241 (2%)

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTA 443
           TKL + +    V+  + +   ++L +NP EA  +++ V +     +  ++ +  V RK+ 
Sbjct: 1   TKLGNSEVSGAVDKIVGEMLTNFLEENPNEAKIIVQKVVLAAKARQAAKKARELVQRKSP 60

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKL+DCS      +ELF+VEGDSAGG+AKQ R+R  QA+LPLRGKILNV  + 
Sbjct: 61  MGGSGLPGKLSDCSSKDPEISELFLVEGDSAGGTAKQGRDRHFQAILPLRGKILNVEKSM 120

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTF 558
             K+ +N++I ++  ALG    ++          LRY K++IMTDAD+DG+HI++L+LTF
Sbjct: 121 LHKVYDNEEIKNIYTALGVSVGTEEDSKALNISKLRYHKIVIMTDADIDGSHISTLILTF 180

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           F++ M +LIE  ++++  PPL+ + +G K VYA++E+ ++ +  E    GKG +E+ R+K
Sbjct: 181 FFRYMKELIENGYIYIAQPPLYLLKKGNKKVYAYNEKEREDLTSEMAPDGKG-VEVQRYK 239

Query: 619 G 619
           G
Sbjct: 240 G 240


>gi|91093601|gb|ABE11594.1| GyrB [Escherichia coli]
          Length = 254

 Score =  200 bits (507), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 105/246 (42%), Positives = 160/246 (65%), Gaps = 2/246 (0%)

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
             + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+
Sbjct: 1   GLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIID 60

Query: 425 RSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483
            +  R   R+ R    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RN
Sbjct: 61  AARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRN 120

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
           R NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 121 RKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMT 180

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILE 602
           DADVDG+HI +LLLTFFY++M +++E+ H+++  PPL+++ +G +  Y  D+E   +   
Sbjct: 181 DADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQI 240

Query: 603 EFKKHG 608
                G
Sbjct: 241 SIALDG 246


>gi|306451393|gb|ADM88872.1| DNA gyrase subunit B [Sphaerotilus natans subsp. natans]
          Length = 400

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 137/406 (33%), Positives = 211/406 (51%), Gaps = 23/406 (5%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL-----------SPLEKKEK 198
           +SGGLHGVG+S VN LS  L +TV R   +    F +G+P            +   +   
Sbjct: 1   VSGGLHGVGVSCVNGLSKWLRLTVRRDGRVHQIDFRKGVPQDRVIELRDGVETSPMRVTG 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +KRGT + F PD +IF     F    L K  +  ++L+  VK     ++         
Sbjct: 61  ETDKRGTEVHFLPDTEIFQQNNEFHYDILAKRLRELSFLNNGVKIRLVDER------NGG 114

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK--KGTHRGTVEWAIAWCEEN-PEI 315
           +++ F + GG+K +++   + + ++   IF    EK         VE A+ W +     +
Sbjct: 115 KEDNFAYAGGVKGFVEFVNKGKKVLHPNIFHAVGEKQSDQGTTIGVEVAMQWNDAFSESV 174

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +GLR A+TR I KY E      K  + I  +D+      ++SV 
Sbjct: 175 LCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEDNDIAKKAKVEISGEDMREGLACVVSVK 234

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + EP+F+ QTK KLVS + +  VE+ +      +L++NP +A  +   +++ +  R   R
Sbjct: 235 VPEPKFSSQTKDKLVSSEVRAPVEDIVSRLLTDWLLENPTDAKTICGKIVDAARARDAAR 294

Query: 434 KQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           K RE+ R+   +  L LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPL
Sbjct: 295 KAREMTRRKGVLDGLGLPGKLADCQEKDPTLCEIYIVEGDSAGGSAKQGRDRKFQAILPL 354

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538
           RGKILNV  A  EK+ ++ +I+ L+ ALG         +D   +K+
Sbjct: 355 RGKILNVERARYEKLLSSNEILTLITALGTGIGQGMGGDDFNPDKL 400


>gi|198042694|gb|ACH81172.1| GyrB [Pseudoalteromonas sp. UST050418-015]
          Length = 385

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 140/394 (35%), Positives = 219/394 (55%), Gaps = 16/394 (4%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS++L +T+ RQ  +  Q ++ G+P +PL          GT I F P  + 
Sbjct: 1   GVGVSVVNALSEKLKLTIRRQGKLHEQFYTMGVPDAPLAIIGD-SETTGTEIRFWPSGET 59

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   F    L K  +  ++L+  V    + ++E        + + F + GG++ +++ 
Sbjct: 60  FTNL-DFHFDILAKRLRELSFLNSGVSIILNDERE------ENKTDHFKYEGGIRAFVEY 112

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              N++ +   +F    E++     +VE ++ W +     I  + N I   +GGTH +G 
Sbjct: 113 LNRNKTPVHKGVFHFTHERE-EDGISVEVSMQWNDAFQENIYCFTNNIPQRDGGTHLAGF 171

Query: 335 RVALTRGIKKYA----ELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           R ALTR +  Y        + K   +   DD       ++SV + +P+F+ QTK KLVS 
Sbjct: 172 RSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSS 231

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRL 449
           + +  VE A+ + F  +L++NP++A  ++  +I+ +  R   RK R    RK A+    L
Sbjct: 232 EVKSAVEQAMAEKFTEFLLENPMDAKIVVGKIIDAARAREAARKAREMTRRKGAMDLAGL 291

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ +
Sbjct: 292 PGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLS 351

Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
           +Q++  L+ ALGC   R +Y  E LRY ++IIMT
Sbjct: 352 SQEVATLITALGCGIGRDEYNPEKLRYHRIIIMT 385


>gi|3985986|dbj|BAA34869.1| DNA gyrase subunit B protein [Nitrosomonas sp. GH22]
          Length = 389

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 136/401 (33%), Positives = 225/401 (56%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+ L +T+ R+  +   +F  G+ ++PL    +  +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEWLRLTIYRKGNVHQIEFRDGVAVAPLAVTGQT-DKHG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F     IFG+   +      +  +  ++L+  ++      ++  E       E F 
Sbjct: 60  TEVHFLASQAIFGNVT-YHYDIFARRLRELSFLNYGIRIRLVDQRDNRE-------ETFA 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           F GG++ +++     ++++   IF  K  K      TVE A+ W +    ++  + N I 
Sbjct: 112 FSGGIRNFVEYINRTKTVLHPSIFYAKGMKDDI---TVEIAMQWNDSYAEQVLCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +GLR A+TR +  Y E  +   K  +    DD+      +LS+ + EP+F+ 
Sbjct: 169 QKDGGTHLTGLRAAMTRTLNSYIEKNELAKKAKVDTTGDDMREGMTCVLSIKLFEPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK KLVS + +  VE  +      ++++NP EA  +   +IE +  R   RK RE+ R+
Sbjct: 229 QTKEKLVSSEVRPVVEEVVSHKLSEFMLENPNEAKIICNKIIEAARAREAARKARELTRR 288

Query: 442 TA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
              +  + LPGKLADC +      EL++VEGDSAGGSAKQ R+R  QA++PL+GKILNV 
Sbjct: 289 KGVLDSMGLPGKLADCQEKDPKLCELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            +  +K+ ++Q+I+ L+ ALG    + +Y  + LRY ++II
Sbjct: 349 KSRFDKLISSQEIVSLITALGTGIGKDEYNPDKLRYHRIII 389


>gi|164690663|dbj|BAF98615.1| gyrase B [Sporolactobacillus putidus]
          Length = 377

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 134/388 (34%), Positives = 209/388 (53%), Gaps = 15/388 (3%)

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG SVVNALS  + V V R   ++ Q++ RG P   L+      ++ GT   F PDP+IF
Sbjct: 1   VGASVVNALSTTMWVKVYRNGHVYYQEYHRGKPAEDLKVIGDA-DRTGTTTHFIPDPEIF 59

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   FD   L    +  A+L+  ++      +E   K      E F+F GG+++Y++  
Sbjct: 60  KETTHFDYDTLRIRVRELAFLNKNIRISIEDKREKDRK------ETFHFEGGIRSYVEFL 113

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLR 335
             ++ ++   I   + EK G     VE A+ +          + N I T EGG+HE G +
Sbjct: 114 NRSKEVLHQPIDL-EGEKDGI---RVEIALQYNNGFSSQLYSFANNIHTHEGGSHEYGFK 169

Query: 336 VALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
           +ALTR I  YA+  Q  +    ++  +D+      I+S+   +P+F GQTKTKL + + +
Sbjct: 170 IALTRVINDYAKKNQQMKASDPNLTGEDVREGLTAIVSIKHPDPQFEGQTKTKLGNPEVR 229

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
              ++   + F  YL +NP  A  ++E  ++        ++ +    RK+++    LPGK
Sbjct: 230 AITDSMFSESFSRYLYENPDIARMIVEKGMVAARARSAAKKARELTRRKSSLESSSLPGK 289

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC+   A  +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +K+ +N +
Sbjct: 290 LADCTSRDASISELYIVEGDSAGGSAKQGRDRMFQAILPLRGKILNVEKARLDKVLSNAE 349

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVII 540
           I  ++ ALG     +++ E  RY K+II
Sbjct: 350 IRAMITALGTGVGEEFKLEKARYHKIII 377


>gi|113912339|gb|ABI48366.1| DNA gyrase subunit B [Pseudomonas fragi]
          Length = 392

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 144/397 (36%), Positives = 214/397 (53%), Gaps = 17/397 (4%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P +P+    +     GT+I 
Sbjct: 1   KVSGGLHGVGVSVVNALSELLVLTVRRSGKIWEQTYVHGVPQAPMAIVGE-SETTGTQIH 59

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F+P  + F +   F    L K  +  ++L+  V      ++   E       E F + GG
Sbjct: 60  FKPSDQTFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGG 111

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           L+ ++     N++ ++         + G     VE A+ W +     +  + N I   +G
Sbjct: 112 LRAFVDYLNTNKTPVNQVFHFSVQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDG 168

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH  G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK 
Sbjct: 169 GTHLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKD 228

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAI 444
           KLVS + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+
Sbjct: 229 KLVSSEVKTAVEQEMGRFFSDFLLENPNEAKLIVGKMIDAARAREAARKAREMTRRKGAL 288

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  
Sbjct: 289 DIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARF 348

Query: 505 EKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
           +K+ ++Q++  L+ ALGC   R +Y  E LRY  +II
Sbjct: 349 DKMISSQEVGTLITALGCGIGRDEYNIEKLRYHNIII 385


>gi|161339240|gb|ABX64371.1| GyrB [Gordonia amicalis]
          Length = 416

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 135/421 (32%), Positives = 210/421 (49%), Gaps = 38/421 (9%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+ +Y +SGGLHGVGISVVNALS ++ + +AR    ++Q +S   P +   ++   
Sbjct: 1   GGKFDSDSYAVSGGLHGVGISVVNALSTKVELEIARDGHNWAQTYSYAKPGAL--EQGDA 58

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------- 249
             K GT + F PDP+IF +   F+A  + +  Q  A+L+  +    +  +          
Sbjct: 59  TRKTGTTVRFWPDPQIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEAPGDA 118

Query: 250 -------------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
                              E A+    P+   +++P GL  Y++     +  I + +   
Sbjct: 119 NGDEDAPATDVAEVVLTETEKAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGF 178

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             + +G     VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   
Sbjct: 179 SAKGEGH---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEK 235

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
           +   ++   +  DD+      ++S  + +P+F GQTKTKL + + +  V+    +   H+
Sbjct: 236 KLIKEKDGKLTGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHW 295

Query: 408 LVQNPIEATKLLEWVIER-SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
              NP EA  +++   +        RR +  V RKTA     LPGKLADC  N     E+
Sbjct: 296 FEANPAEAKIIIKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEV 355

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS 526
           +IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     
Sbjct: 356 YIVEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHD 415

Query: 527 Q 527
           +
Sbjct: 416 E 416


>gi|19909639|dbj|BAB87015.1| DNA gyrase subunit B [Rhodobacter sphaeroides]
          Length = 398

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 136/406 (33%), Positives = 205/406 (50%), Gaps = 18/406 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALSD L + + R       +F  G  +  L        ++G
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSDWLELRIWRNGREHFARFENGETVEHLRVVRDAPGEKG 60

Query: 205 TRITFRPD-----PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
           T + F        P        +    L    +  A+L+  V+     ++        P 
Sbjct: 61  TEVRFLASAKTNRPDGTFSNLDYSFKTLEARLRELAFLNSGVRILLEDER-----PAEPL 115

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
             E ++ GG++ +++    ++S +  E      E+ G     VE A+ W +     +  +
Sbjct: 116 HSELFYEGGVREFVRYLDRSKSPVMPEPIFITGERGGI---GVEVAMWWNDSYHETVLPF 172

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIRE 376
            N I   +GGTH +G R ALTR I KYA+ +   R        DD       +LSV + +
Sbjct: 173 TNNIPQRDGGTHLAGFRGALTRTITKYAQDSGIARREKVDFTGDDAREGLTCVLSVKVPD 232

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQ 435
           P+F+ QTK KLVS + +  VEN + +    +  +NP  A  ++  ++         R+ +
Sbjct: 233 PKFSSQTKDKLVSSEVRPAVENLVNEKLAEWFEENPAIAKSIVGKIVEAALAREAARKAR 292

Query: 436 REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
               RKTA+    LPGKLADC +     +ELFIVEGDSAGGSAKQ R R NQAVLPLRGK
Sbjct: 293 EMTRRKTAMDVASLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRARKNQAVLPLRGK 352

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
           ILNV  A  +++ +++ +  L+ ALG    R ++    LRY K+II
Sbjct: 353 ILNVERARFDRMLSSETVGTLITALGAGIGRDEFDIAKLRYHKIII 398


>gi|324962626|gb|ADY62415.1| gyrase subunit B [Frankia sp. NRRLB-16386]
          Length = 362

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 106/336 (31%), Positives = 164/336 (48%), Gaps = 21/336 (6%)

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G + VVDNGRGIPV  HP    + T+E++LT LHAGGKFD  +Y +SGGLHGVGI
Sbjct: 1   TLLADGGVRVVDNGRGIPVGMHP-TEKRPTVEVVLTKLHAGGKFDGESYAVSGGLHGVGI 59

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE-KVRNKRGTRITFRPDPKIFGD 218
           SVVNALS ++ V +     +++QK++   P    +    K   + GT +TF  D +IF  
Sbjct: 60  SVVNALSTKVDVEIKVDGFVWAQKYTAQRPGPLEKGAPLKRGQRTGTTVTFWADAEIFET 119

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              +    L +  Q  A+L+  +      ++        P +  F +  GL  ++     
Sbjct: 120 -TEYKYETLYRRLQEMAFLNKGISITLRDER-----PEEPAEVTFMYENGLADFVTHLNA 173

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            +  I   I   + + KG      E A+ W       + ++ NTI T EGGTHE G R A
Sbjct: 174 TKDPIHKTIIALEAKGKGI---EAELAMQWNAGYNESVYTFANTINTHEGGTHEEGFRAA 230

Query: 338 LTRGIKKYAELTQNKRAISI---------ISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           LT  +  YA+     + +             DD+      I+SV + EP+F GQTKTKL 
Sbjct: 231 LTSAVNVYAKDQNLLKPVKAGSKSGDERLSGDDIREGLTAIISVKLAEPQFEGQTKTKLG 290

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           + +A++ V+         +   N +E   ++   ++
Sbjct: 291 NTEAKKFVQEMCYSALGDWFHGNRVEGRAIVGKALD 326


>gi|323146978|gb|ADX32782.1| DNA gyrase B subunit [endophytic bacterium 8(2011)]
          Length = 234

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 85/246 (34%), Positives = 130/246 (52%), Gaps = 27/246 (10%)

Query: 77  LFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEII 133
           L  EV+DN++DE +AGY N I+V +  +  +++ DNGRG+P          P +S  EI+
Sbjct: 1   LVFEVLDNSIDEALAGYCNDIQVIIHADNSISITDNGRGVPTGLKMDDKHEPKRSAAEIV 60

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP---- 189
           +T LHAGGKFD ++Y++SGGLHGVG+S VNALS  L +TV R       +F RG+P    
Sbjct: 61  MTELHAGGKFDQNSYKVSGGLHGVGVSCVNALSAWLRLTVRRDGKKHFMEFHRGVPQNRV 120

Query: 190 --------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241
                   +SP++   +  N RGT + F  D  IFG+   +    L K  +  ++L+  V
Sbjct: 121 IEEIGGIAVSPIQVVGETEN-RGTEVHFMADETIFGN-VEYHYDILAKRIRELSFLNNGV 178

Query: 242 KTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
           +   +  +   E         F F GG+K +++   + +S++   IF    EK G     
Sbjct: 179 RIRLTDQRSGKEDD-------FAFVGGVKGFVEYINKTKSVLHPTIFHVSGEKDGV---G 228

Query: 302 VEWAIA 307
           VE A+ 
Sbjct: 229 VEVAMQ 234


>gi|259018132|gb|ACV89658.1| DNA gyrase subunit B [Nocardia neocaledoniensis]
          Length = 415

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 132/421 (31%), Positives = 208/421 (49%), Gaps = 34/421 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS +L   +      ++Q +    P      + +   + G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSSKLEAEIDTDGYHWAQTYKDAKPGKL--IQGEPTKRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T I F  DP+IF     ++   + +  Q  A+L+  +    +  +               
Sbjct: 59  TTIRFWADPEIFETTT-YNFETVSRRLQEMAFLNKGLTITLTDQRVTESDVIDEVVSDTA 117

Query: 250 ---EIAEKYGIPEKEE------FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
              + AE+      E       + +PGGL  +++     +  I + +     +  G    
Sbjct: 118 EAPKHAEEGADKPVEHKVKTRTYRYPGGLVDFVRHINRTKQAIHNSVVGFTGKGTGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SI 357
            +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++
Sbjct: 175 ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKEKKLLKEKDGNL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  
Sbjct: 235 TGDDIREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRACNEHLTHWFEANPADAKT 294

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           +++  +  ++ R+  RK RE V RK+A     LPGKLADC        E++IVEGDSAGG
Sbjct: 295 IVQKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKCEIYIVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY 
Sbjct: 355 SAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYH 414

Query: 537 K 537
           K
Sbjct: 415 K 415


>gi|238477944|gb|ACR43665.1| DNA gyrase subunit B [Aeromonas enteropelogenes]
          Length = 374

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 141/386 (36%), Positives = 213/386 (55%), Gaps = 16/386 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P P IF D   F    L K  +  ++L+  V      +++  E         F + GG+K
Sbjct: 60  PSPTIFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIK 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGT
Sbjct: 112 AFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ +TK KL
Sbjct: 169 HLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSRTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
           VS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+  
Sbjct: 229 VSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDI 288

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 289 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 348

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED 532
           + ++Q++  L+ ALGC         D
Sbjct: 349 MISSQEVGTLITALGCGIGRDEYNPD 374


>gi|164456751|dbj|BAF97868.1| gyrase B subunit [Vibrio gazogenes]
          Length = 382

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 141/393 (35%), Positives = 215/393 (54%), Gaps = 16/393 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVGISVVNALS+++ +T+ R   I++Q +  G+P +PL          GT + F
Sbjct: 1   VSGGLHGVGISVVNALSEKVALTIYRSGHIYTQTYHHGVPQAPLASVGDTEK-SGTLVRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F +   F    L K  +  ++L+  V      +++        +++ F + GG+
Sbjct: 60  WPSSETFTNI-EFHYEILAKRLRELSFLNSGVSIKLIDERDS-------KQDHFRYEGGI 111

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           + ++     N++ I   +F    E++     TVE A+ W +     I  + N I   +GG
Sbjct: 112 QEFVSHLNRNKTPIHDRVFHFNQERED--GITVEVAMQWNDSFQESIFCFTNNIPQRDGG 169

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  + +      K   S   DD       ++SV + +P+F+ QTK K
Sbjct: 170 THMAGFRAALTRTLNTFMDKEGFSKKEKTSTSGDDAREGLTAVISVKVPDPKFSSQTKDK 229

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIR 445
           LVS + +  VE A+ +    +L++NP EA  +   +I+ +  R   RK R    RK A+ 
Sbjct: 230 LVSSEVKSAVETAMGEKLSEFLIENPNEAKIVCSKIIDAARAREAARKAREMTRRKGALD 289

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +
Sbjct: 290 LAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 349

Query: 506 KIRNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537
           K+ ++Q++  L+ ALGC   R +Y  + LRY  
Sbjct: 350 KMLSSQEVATLITALGCGIGRDEYNPDKLRYHN 382


>gi|151415017|gb|ABS11698.1| DNA gyrase subunit B [Pseudomonas oleovorans subsp. lubricantis]
          Length = 390

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 146/399 (36%), Positives = 219/399 (54%), Gaps = 18/399 (4%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS EL +T+ R   I+ Q +  G+P +PL       +  GT+I 
Sbjct: 4   QVSGGLHGVGVSVVNALSKELVLTIRRSGKIWEQTYVHGVPQAPLTAVGDT-DGTGTQIH 62

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F+P  + F +   F    L K  +  ++L+  V      ++         ++E F + GG
Sbjct: 63  FKPSEETFANIH-FSWDILAKRLRELSFLNSGVGILLRDER-------TGKEELFKYEGG 114

Query: 269 LKTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           LK +++    N+++++       + E+ G     VE A+ W +     I  + N I   +
Sbjct: 115 LKAFVEYLNTNKTVVNQVFHFSVQREEDGV---GVEVALQWNDSFNENILCFTNNIPQRD 171

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R ALTR +  Y E     +        DD       I+SV + +P+F+ QTK
Sbjct: 172 GGTHLAGFRSALTRHLNNYIEAEGLAKKFKVATTGDDAREGLTAIISVKVPDPKFSSQTK 231

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTA 443
            KLVS + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A
Sbjct: 232 DKLVSSEVKTAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGA 291

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A 
Sbjct: 292 LDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVERAR 351

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIM 541
            +++ ++Q++  L+ ALGC   R +Y  + LRY  +IIM
Sbjct: 352 FDRMISSQEVGTLITALGCGIGRDEYNIDKLRYHNIIIM 390


>gi|157073811|dbj|BAF79904.1| gyrase B [Methylobacterium zatmanii]
          Length = 399

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 142/408 (34%), Positives = 220/408 (53%), Gaps = 21/408 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS  L + + R       +F  G  ++PLE      ++RG
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSTSLKLRIWRAGKEHRMEFRHGDAVAPLEVVGPAGDRRG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF P P+ F     FD A L K  +  A+L+  V+   +  +     +    +EE  
Sbjct: 61  TEVTFLPSPETF-TMTEFDYATLEKRLRELAFLNSGVRIVLTDAR-----HAEHRREELC 114

Query: 265 FPGGLKTYLQTKLENRSLIS--SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           + GG++ +++    +R  +   ++  T   E+ G     VE A  W +     +  + N 
Sbjct: 115 YEGGVEAFVRYLDRSRKPVEGMAKPVTVLGERDGI---RVEVAFWWNDSFNETVLPFTNN 171

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R ALTR +  YAE +    K  +S+  DD       ++SV + +P+F
Sbjct: 172 IPQRDGGTHMAGFRAALTRQLTGYAESSGIAKKEKVSLTGDDCREGLTAVISVQVPDPKF 231

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK-LLEWVIERSEERLRRRKQREV 438
           + QTK KLVS + +  VEN L +    +L +NP +A   + + V+  +     R+ +  +
Sbjct: 232 SSQTKDKLVSSEVRPAVENILNEGLSTWLEENPAQAKSVMGKVVLAAAAREAARKARETI 291

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +      EL +VEGDSAGGSAKQ R+R+ QAVLPLRGKILN
Sbjct: 292 TRKGALDIASLPGKLADCQERDPTKCELLLVEGDSAGGSAKQGRDRTFQAVLPLRGKILN 351

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVII 540
           V    ++++ ++ +I  L+ ALG         R  +  + LRY ++II
Sbjct: 352 VERVRADRMLSSAEIGTLITALGAGIGRSSTDREGFNPDKLRYHRIII 399


>gi|51571575|emb|CAH18954.1| gyrase B [Corallococcus coralloides]
          Length = 370

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 129/382 (33%), Positives = 202/382 (52%), Gaps = 16/382 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
            Y++SGGLHGVG++ VN LS+   V V R   ++ Q ++RG+     ++     +K GT 
Sbjct: 1   AYKVSGGLHGVGVTCVNFLSEWFKVRVQRAGKVYEQSYARGVANGSPQEVG-TTDKLGTT 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F+PD ++      F+   L +  +  A+L+  +      ++   E         F F 
Sbjct: 60  IHFKPDTQVMETV-DFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD-------FKFD 111

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+ ++++   + +  +  +    K+E++G    ++E A+ W +     I ++ N I T 
Sbjct: 112 GGISSFVEYLNKAKEALHDKPVYIKSEREGV---SLEIAMQWNDGYDERIFTFANNINTH 168

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQT 383
           EGG+H SG + ALTR +  YAE     + +      +D       ++SV +  P+F GQT
Sbjct: 169 EGGSHLSGFKAALTRTLNSYAEKGSLWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQT 228

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKT 442
           KTKL + + +  VE  + D    +L +NP  A K++  +          R+ +  V RK 
Sbjct: 229 KTKLGNSEVKGLVEQMVNDQLASFLEENPPLAKKVVVKIGDACRARLAARKARETVRRKG 288

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
            +    LPGKLADC     H +EL+IVEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A
Sbjct: 289 VLDGGGLPGKLADCQSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKA 348

Query: 503 GSEKIRNNQQIMDLVQALGCRT 524
             EK+  + +I+ L+ ALG   
Sbjct: 349 RFEKMLTSAEIVTLITALGTGI 370


>gi|283132383|dbj|BAI63597.1| DNA gyrase subunit B [Leptospira noguchii]
          Length = 389

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 134/397 (33%), Positives = 216/397 (54%), Gaps = 13/397 (3%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS+ L V V ++  I++QK+ +G+P+SP++ K      RGT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSEYLEVEVHQKGKIYTQKYQKGVPVSPVQPKGDSSE-RGTVV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PD  IF     F    L    +  A+L+  +       +   +     E   F F G
Sbjct: 60  RFKPDATIFTTV-DFQFDVLSARFRELAFLNKGLVLVVEDRRRGQDNLLRNE---FQFSG 115

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEG 327
           G+ ++++   EN+  +   I   + +       +++++  + E    I  + N I  + G
Sbjct: 116 GIVSFVEHINENKHPMHKVIHFERNKDDVLAEISIQYSETYTEN---IFCFTNNINNNLG 172

Query: 328 GTHESGLRVALTRGIKKYAELTQ---NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GTH  G R ALTR +  + +       K    +  +D+      ++S+ I +P+F  QTK
Sbjct: 173 GTHLEGFRAALTRTLNDFLKKDSALSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTK 232

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
            KLV+ + +  ++    +    +  +NP    K+LE  I  ++ R   RK R+   RKT 
Sbjct: 233 EKLVNAEIKGIMQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTV 292

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADCS+     +EL++VEGDSAGGSAKQ R+R+ QA+LPL+GKILNV  A 
Sbjct: 293 LEGGGLPGKLADCSEKDPAHSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKAR 352

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            +KI ++++I  LV ALG      ++  + +RY K++
Sbjct: 353 LDKILSSEEIRVLVSALGTGIGEDEFNIDKIRYHKIM 389


>gi|157073809|dbj|BAF79903.1| gyrase B [Methylobacterium thiocyanatum]
          Length = 399

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 142/408 (34%), Positives = 218/408 (53%), Gaps = 21/408 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS  L + + R       +F  G  ++PLE      ++RG
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSTSLMLRIWRGGKEHRMEFRHGDAVAPLEVVGPAGDRRG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF P  + F     FD A L K  +  A+L+  V+   +  +    K      EE  
Sbjct: 61  TEVTFLPSTETF-TMTEFDYATLEKRLRELAFLNSGVRIVLTDARHAEHKR-----EELC 114

Query: 265 FPGGLKTYLQTKLENRSLIS--SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           + GG++ +++    +R  +   ++  T   E+ G     VE A  W +     +  + N 
Sbjct: 115 YEGGVEAFVRYLDRSRKPVDGMAKPVTVLGERDGI---RVEVAFWWNDSFNETVLPFTNN 171

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R ALTR +  YAE +    K  +S+  DD       ++SV + +P+F
Sbjct: 172 IPQRDGGTHMAGFRAALTRQLTGYAESSGIAKKEKVSLTGDDCREGLTAVISVQVPDPKF 231

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK-LLEWVIERSEERLRRRKQREV 438
           + QTK KLVS + +  VEN L +    +L +NP +A   + + V+  +     R+ +  +
Sbjct: 232 SSQTKDKLVSSEVRPAVENILNEGLSTWLEENPAQAKSVMGKVVLAAAAREAARKARETI 291

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +      EL +VEGDSAGGSAKQ R+R+ QAVLPLRGKILN
Sbjct: 292 TRKGALDIASLPGKLADCQERDPSKCELLLVEGDSAGGSAKQGRDRTFQAVLPLRGKILN 351

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVII 540
           V    ++++ ++ +I  L+ ALG         R  +  + LRY ++II
Sbjct: 352 VERVRADRMLSSAEIGTLITALGAGIGRSSTDREGFNPDKLRYHRIII 399


>gi|324962622|gb|ADY62413.1| gyrase subunit B [Frankia sp. CN3]
          Length = 362

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 107/336 (31%), Positives = 163/336 (48%), Gaps = 21/336 (6%)

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G + VVDNGRGIPV  HP    + T+E++LT LHAGGKFD  +Y +SGGLHGVGI
Sbjct: 1   TLLADGGVRVVDNGRGIPVGMHP-TEKRPTVEVVLTKLHAGGKFDGESYAVSGGLHGVGI 59

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE-KVRNKRGTRITFRPDPKIFGD 218
           SVVNALS  L V +     +++Q ++   P    +    K   + GT +TF  D +IF  
Sbjct: 60  SVVNALSTRLDVEIKVDGFVWAQTYTAQRPGRLEKGAPLKRSERTGTTVTFWADSEIFET 119

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              +    L +  Q  A+L+  +      ++        P +  F +  GL  ++     
Sbjct: 120 -LEYKYETLYRRLQEMAFLNKGISISLRDER-----GEEPVEVTFMYEHGLADFVTHLNA 173

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            +  I   I   + + KG      E A+ W       + ++ NTI T EGGTHE G R A
Sbjct: 174 TKEPIHKTIIALEAKGKGI---EAELAMQWNGGYNESVYTFANTINTHEGGTHEEGFRAA 230

Query: 338 LTRGIKKYAELTQNKRAISI---------ISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           LT  +  YA+     + +             DD+      I+SV + EP+F GQTKTKL 
Sbjct: 231 LTSAVNIYAKDQNLLKPVKAGAKNADERLSGDDIREGLTAIISVKLAEPQFEGQTKTKLG 290

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           + +A++ V+         +   N +EA  ++   ++
Sbjct: 291 NTEAKKFVQEMAYSALRDWFDANRVEARAIVSKALD 326


>gi|119226130|dbj|BAF41044.1| DNA gyrase subunit B [Gordonia amarae]
          Length = 423

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 130/427 (30%), Positives = 205/427 (48%), Gaps = 36/427 (8%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
            +Y +SGGLHGVGISVVNALS ++ + + R    +SQ +    P +    +     K GT
Sbjct: 1   DSYAVSGGLHGVGISVVNALSTKVELEIKRDGFQWSQTYLNSEPQTLH--QGAASRKTGT 58

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------- 258
              F PDP IF +   F+A  + +  Q  A+L+  +    + ++  A +           
Sbjct: 59  TTRFWPDPAIFTETTRFNAETVARRLQEMAFLNKGLTITLTDNRPQAVEAPGDPNGDGDT 118

Query: 259 ---------------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                                +   +++  GL  Y++    N+   +    +        
Sbjct: 119 PGGTELAEVVQSPAQKATAKSKTRTYHYADGLIDYIKHI--NKRSKNPIHQSVIGFSGKG 176

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               VE A+ W +     I ++ NTI T EGGTHE G R ALT  + KYA   +   ++ 
Sbjct: 177 TGHEVEIAMQWNDGYSESIHTFANTINTHEGGTHEEGFRAALTSTVNKYAADKKLIKEKD 236

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             +  DD+      ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP E
Sbjct: 237 TKLTGDDIREGLAAVISVKVSDPQFEGQTKTKLGNTEVKGFVQKICNEHLAHWFESNPAE 296

Query: 415 ATKLLEWVIER-SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  +++  ++        RR +  V RKTA     LPGKLADC  N     E++IVEGDS
Sbjct: 297 AKNIIKKAVDSAQARAAARRARDMVRRKTATDIGGLPGKLADCRSNDPALCEVYIVEGDS 356

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LP+RGKI+NV  A  +++  N ++  ++ A G     ++    L
Sbjct: 357 AGGSAKSGRDLMYQAILPIRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDIAKL 416

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 417 RYHKIVL 423


>gi|308152499|dbj|BAJ22228.1| DNA gyrase subunit B [Corynebacterium ammoniagenes]
          Length = 441

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 139/447 (31%), Positives = 212/447 (47%), Gaps = 57/447 (12%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y ISGGLHGVGISVVNALS  +   +      + Q F+  IP    E         G
Sbjct: 1   SDSYAISGGLHGVGISVVNALSTRVEAEIKTDGKHWYQVFNNSIPEELQE--GGNARGSG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE----------- 253
           T+I F  DP+IF     +D   + +  Q  A+L+  +      ++   E           
Sbjct: 59  TKIRFWADPEIFESV-EYDYDTIARRLQEMAFLNKGLTIQLIDERVTKEQLDLEAIADAE 117

Query: 254 ------------------------------------KYGIPEKEEFYFPGGLKTYLQTKL 277
                                               K  + +K  +++P GL  Y++   
Sbjct: 118 SGEKQLDETSFDDEEVDDFVEEGAVTPAPVETSGSSKKKLQKKVTYHYPDGLIDYVKFLN 177

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           + +S I   +     +        VE A+ W +       ++ NTI T EGGTHE G R 
Sbjct: 178 KTKSAIHPTVVAFDVKGN---EHEVEVAMQWNQGYKESTHTFANTINTYEGGTHEEGFRS 234

Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALT  + +YA+  +   ++  S+  DD       ++S+ + +P+F GQTKTKL + + + 
Sbjct: 235 ALTSLMNRYAKEHKLMREKDGSLTGDDCREGLAAVVSLKVADPQFEGQTKTKLGNSEIKG 294

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            V+ A+ +  + +   NP EA  ++   +  S+ R+  RK RE V RK+A     LPGKL
Sbjct: 295 FVQRAVNEHLNDWFDANPAEAKAIVNKAVASSQARVAARKARELVRRKSATDLGGLPGKL 354

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC       +EL+IVEGDSAGGSAK  R+   QA+LPLRGKILNV  A  +K+  N ++
Sbjct: 355 ADCRTKDPKISELYIVEGDSAGGSAKGGRDSMFQAILPLRGKILNVEKARMDKVLKNAEV 414

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVII 540
             ++ ALG     ++    LRY K+++
Sbjct: 415 QAIITALGTGIHEEFDITKLRYNKIVL 441


>gi|238477950|gb|ACR43668.1| DNA gyrase subunit B [Aeromonas veronii]
          Length = 374

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 141/386 (36%), Positives = 212/386 (54%), Gaps = 16/386 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P P IF D   F    L K  +  ++L+  V      +++  E         F + GG+K
Sbjct: 60  PSPAIFSDTL-FHYEILAKRLRELSFLNSGVFIRLQDERDGRE-------AHFCYEGGIK 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGT
Sbjct: 112 AFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R ALTR +  Y +      K   +   DD+    + ++S  + +P+F+ QTK KL
Sbjct: 169 HLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISGKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
           VS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+  
Sbjct: 229 VSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDI 288

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 289 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 348

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED 532
           + ++Q++  L+ ALGC         D
Sbjct: 349 MISSQEVGTLITALGCGIGRDEYNPD 374


>gi|19912133|dbj|BAB88378.1| DNA gyrase subunit B [Flavobacterium ferrugineum]
          Length = 394

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 149/396 (37%), Positives = 206/396 (52%), Gaps = 8/396 (2%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+S VNALS  LHVTV R+  +F Q++  G+P  P+    +  N  GTR+ F
Sbjct: 1   VSGGLHGVGVSCVNALSTHLHVTVQREGKVFEQEYRIGVPQYPVRVVGESEN-TGTRVQF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            PD  IF     ++   L    +  ++L+  V+   +  +E  E    P  + F+  GG+
Sbjct: 60  WPDDTIFTSTV-YNKEILEGRLRELSFLNRGVRINLTDLREQEEDGQ-PYTKSFFSEGGI 117

Query: 270 KTYLQTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
             +++    N    +        E         VE A+++       I SY N I T EG
Sbjct: 118 VEFVEMLDTNAGRTTLIPKVISVEGHDNNTNVAVEVALSYNNSYAEHIYSYVNNINTIEG 177

Query: 328 GTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH SG R ALTR  K Y +      K  + I  DD       I+SV + EP+F GQTKT
Sbjct: 178 GTHVSGFRRALTRVFKAYGDRNSLFEKAKVEIEGDDFREGLSAIISVKVPEPQFEGQTKT 237

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAI 444
           KL + D    V++ +    + YL +NP EA  ++  VI         R+ +  V RKT +
Sbjct: 238 KLGNSDVMGVVDSTVSRVLEAYLEENPKEAKSIVAKVILAAQARAAARKARELVQRKTVL 297

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADCS   A   ELF+VEGDSAGG+AKQ R+RS QA+LPLRGKILNV  A  
Sbjct: 298 TGGGLPGKLADCSDRDAEKCELFLVEGDSAGGTAKQGRDRSFQAILPLRGKILNVEKAME 357

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            KI  N++I ++  ALG    +    ++L   K+  
Sbjct: 358 HKIYENEEIRNMYTALGVTVGTPEDPKELNLTKLRY 393


>gi|269849455|gb|ACZ49796.1| DNA gyrase subunit B [Aeromonas sobria]
          Length = 374

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 141/386 (36%), Positives = 212/386 (54%), Gaps = 16/386 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVGISVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F 
Sbjct: 1   SGGLHGVGISVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSG-TGTEVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P P IF D   +    L K  +  ++L+  V      +++  E         F + GG+K
Sbjct: 60  PSPTIFTDTL-YHYEILAKRLRELSFLNSGVSIRLHDERDGRE-------VHFCYEGGIK 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I  ++F   TE  G     VE A+ W +     +  + N I   +GGT
Sbjct: 112 AFVEYLNQNKTPIHPKVFHFTTEHDGI---GVEVAMQWNDAYQEGVCCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KL
Sbjct: 169 HLVGFRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
           VS + +  VE A+ +    +L++NP +A  +++ +I+ +  R   RK RE   RK A+  
Sbjct: 229 VSSEVKTAVEQAMGEKLGEFLLENPSDAKIVVDKIIDAARAREAARKARELTRRKGALDI 288

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILN   A  +K
Sbjct: 289 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNAEKARFDK 348

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED 532
           + ++Q++  L+ ALGC         D
Sbjct: 349 MISSQEVGTLITALGCGIGRDEYNPD 374


>gi|219944532|gb|ACL55040.1| DNA gyrase B subunit [Dietzia sp. W5026]
          Length = 441

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 140/444 (31%), Positives = 211/444 (47%), Gaps = 62/444 (13%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD+ +Y +SGGLHGVGISVVNALS  + V + R   ++ Q F    P   ++      
Sbjct: 1   GKFDSDSYAVSGGLHGVGISVVNALSTRVEVQIKRDGRLWKQDFDMAEPAELVDA--GPA 58

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI--- 257
              GT++ F  DP IF     +D   + +  Q  A+L+  +    +  +  AEK      
Sbjct: 59  EGTGTKVRFWADPSIFETT-EYDFDIVARRLQEMAFLNKGLTITLTDRRPRAEKAAELDA 117

Query: 258 -------------------------------------------------PEKEEFYFPGG 268
                                                              K  F++P G
Sbjct: 118 IADSEGVGPDSAPGSDEGSDLASAVDAEQAFVEGAGEGDESTAETAKVRERKRTFHYPDG 177

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           LK Y++   ++++ I   I   + +  G     VE A+ W       + ++ NTI T EG
Sbjct: 178 LKDYVKAINKSKTAIHQTILYFEGKGTGH---EVEVAMQWNSGYSESVHTFANTINTHEG 234

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTHE G R ALT  + KYA   +   ++  ++  DD+      ++S  I +P+F GQTKT
Sbjct: 235 GTHEEGFRAALTSLVNKYARDKKLIKEKDPNLTGDDIREGLAAVISAKIADPQFEGQTKT 294

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAI 444
           KL + + +  V+  + +   H+   NP EA  ++   I  S+ R+  RK RE+  RK+A 
Sbjct: 295 KLGNTEVKGFVQRQVTEHVGHWFEANPAEAKVIVNKAIASSQARVAARKAREMVRRKSAT 354

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC       +EL+IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  +  
Sbjct: 355 DIGGLPGKLADCRSKDPAKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKSRI 414

Query: 505 EKIRNNQQIMDLVQALGCRTRSQY 528
           +K+  N ++  ++ ALG     ++
Sbjct: 415 DKVLKNAEVQAIITALGTGIHEEF 438


>gi|62085688|gb|AAX63236.1| DNA gyrase subunit B [Gordonia rubripertincta]
          Length = 423

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 134/428 (31%), Positives = 208/428 (48%), Gaps = 38/428 (8%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+  Y +SGGLHGVGISVVNALS ++ + +      + Q +S   P    +     
Sbjct: 1   GGKFDSDAYAVSGGLHGVGISVVNALSTKVELEIENDGFHWEQTYSYAKPGPLEK--GDA 58

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG--- 256
             K GT + F PDP IF +   F+A  + +  Q  A+L+  +    +  +  A +     
Sbjct: 59  TRKTGTTVRFWPDPDIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEPPGDA 118

Query: 257 --------------------------IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
                                      P+   +++P GL  Y++     +  I + +   
Sbjct: 119 NGDEDAPATDVAEAVQTETEKAAAATKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGF 178

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             + +G     VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   
Sbjct: 179 SAKGEGH---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEK 235

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
           +   ++   +  DD+      ++S  + +P+F GQTKTKL + + +  V+    +   H+
Sbjct: 236 KLIKEKDGKLTGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHW 295

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
              NP EA  +++   + ++ R+  R+    V RKTA     LPGKLADC  N     E+
Sbjct: 296 FEANPAEAKIIVKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEV 355

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS 526
           +IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     
Sbjct: 356 YIVEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHD 415

Query: 527 QYREEDLR 534
           ++    LR
Sbjct: 416 EFDIAKLR 423


>gi|270017262|gb|ACZ58148.1| DNA gyrase subunit B [Gordonia amicalis]
          Length = 423

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 137/428 (32%), Positives = 212/428 (49%), Gaps = 38/428 (8%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+ +Y +SGGLHGVGISVVNALS ++ + +AR    ++Q +S   P +   ++   
Sbjct: 1   GGKFDSDSYAVSGGLHGVGISVVNALSTKVELEIARDGHNWAQTYSYAKPGAL--EQGDA 58

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------- 249
             K GT + F PDP+IF +   F+A  + +  Q  A+L+  +    +  +          
Sbjct: 59  TRKTGTTVRFWPDPQIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEAPGDA 118

Query: 250 -------------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
                              E A+    P+   +++P GL  Y++     +  I + +   
Sbjct: 119 NGDEDAPATDVAEVVLTETEKAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGF 178

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             + +G     VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   
Sbjct: 179 SAKGEGH---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEK 235

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
           +   ++   +  DD+      ++S  + +P+F GQTKTKL + + +  V+    +   H 
Sbjct: 236 KLIKEKDGKLTGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHX 295

Query: 408 LVQNPIEATKLLEWVIER-SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
              NP EA  +++   +        RR +  V RKTA     LPGKLADC  N     E+
Sbjct: 296 FEANPAEAKIIIKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEV 355

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS 526
           +IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     
Sbjct: 356 YIVEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHD 415

Query: 527 QYREEDLR 534
           ++    LR
Sbjct: 416 EFDISKLR 423


>gi|321401442|gb|ADW83183.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
          Length = 359

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 143/363 (39%), Positives = 202/363 (55%), Gaps = 10/363 (2%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA-RQNTIFSQKFSRGIPLSPLEKKE 197
           AGGKFD  +Y++SGGLHGVG+SVVNALS+ L  TV      I+ Q++ +G  L P+++  
Sbjct: 2   AGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGKIYEQEYEKGKALYPVKQIG 61

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +    RGT +TF PDP IF     +    L    +  ++L+  +   ++  +E  +K G 
Sbjct: 62  ETTK-RGTIVTFYPDPSIFTQTIEYSYDTLSARMRELSFLNKGITITFTDKRE-KDKDGN 119

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
              E F+   GLK Y++    NR      I    +         VE A+ +       I 
Sbjct: 120 FVSEIFHSTEGLKEYIRYLDGNRE---PIIAHVISMDNDKGEIPVEVALIYNTSYTENIF 176

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFI 374
           SY N I T EGGTH  G R  LTR +KKYA+ +    K    I  DD       I+SV +
Sbjct: 177 SYVNNINTHEGGTHLQGFRTGLTRSLKKYADSSGMLDKLKFEISGDDFREGLTAIISVKV 236

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP+F GQTKTKL + +    V  A+ D  ++YL +NP +A  +++ VI  ++ R   +K
Sbjct: 237 AEPQFEGQTKTKLGNREVVSPVSQAVGDMIENYLEENPNDARIIVQKVILAAQARHAAKK 296

Query: 435 QREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            RE+  RKT +    LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLR
Sbjct: 297 AREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVFLVEGDSAGGTAKQGRDRAFQAILPLR 356

Query: 494 GKI 496
           GKI
Sbjct: 357 GKI 359


>gi|323147002|gb|ADX32794.1| DNA gyrase B subunit [endophytic bacterium 25(2011)]
          Length = 236

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 85/248 (34%), Positives = 131/248 (52%), Gaps = 27/248 (10%)

Query: 78  FSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIIL 134
             EV+DN++DE +AGY N I+V +  +  +++ DNGRG+P          P +S  EI++
Sbjct: 1   VFEVLDNSIDEALAGYCNDIQVIIHADNSISITDNGRGVPTGLKMDDKHEPKRSAAEIVM 60

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP----- 189
           T LHAGGKFD ++Y++SGGLHGVG+S VNALS  L +TV R       +F RG+P     
Sbjct: 61  TELHAGGKFDQNSYKVSGGLHGVGVSCVNALSAWLRLTVRRDGKKHFMEFHRGVPQNRVI 120

Query: 190 -------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
                  +SP++   +  N RGT + F  D  IFG+   +    L K  +  ++L+  V+
Sbjct: 121 EEIGGIAVSPIQVVGETEN-RGTEVHFMADETIFGN-VEYHYDILAKRIRELSFLNNGVR 178

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
              +  +   E         F F GG+K +++   + +S++   IF    EK G     V
Sbjct: 179 IRLTDQRSGKEDD-------FAFVGGVKGFVEYINKTKSVLHPTIFHVSGEKDGV---GV 228

Query: 303 EWAIAWCE 310
           E A+ W +
Sbjct: 229 EVAMQWND 236


>gi|19909657|dbj|BAB87024.1| DNA gyrase subunit B [Variovorax paradoxus]
          Length = 423

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 144/431 (33%), Positives = 221/431 (51%), Gaps = 42/431 (9%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LS 191
           D ++Y++SGGLHGVG+S VNALS +L + V R+  I   +FSRG              +S
Sbjct: 1   DQNSYKVSGGLHGVGVSCVNALSVKLRLIVRREGKIHELEFSRGFVQNRLLETVNGFEVS 60

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
           P++      +KRGT + F PD +IF +   F    L K  +  ++L+  V+     ++  
Sbjct: 61  PMKVIGDT-DKRGTEVHFLPDTEIFKENNDFHYEILSKRLRELSFLNNGVRIRLLDERTG 119

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT-------VEW 304
            E         F   GG++ +++   + ++++    F    EK     G        VE 
Sbjct: 120 KEDD-------FSGAGGVRGFVEFINKGKTVLHPNSFYAAGEKPADTYGGIPGTHIGVEV 172

Query: 305 AIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDD 361
           A+ W      ++  + N I   +GGTH +GLR A+TR I KY E  +   K  + +  DD
Sbjct: 173 AMQWNSGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEENEFAKKAKVEVTGDD 232

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
           +      +LSV + EP+F+ QTK KLVS + +  VE+ +      YL + P +A  +   
Sbjct: 233 MREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVGRLLTDYLQERPNDAKIICGK 292

Query: 422 VIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
           ++E +  R   RK RE+ R+   +  + LPGKLADC +      E+++VEGDSAGGSAKQ
Sbjct: 293 IVEAARAREAARKAREMTRRKGVLDGMGLPGKLADCQEKDPALCEVYLVEGDSAGGSAKQ 352

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-----------RSQYR 529
            R+R  QA+LPLRGKILNV  A  EK+  + +I+ ++ ALG                 + 
Sbjct: 353 GRDRKFQAILPLRGKILNVEKARYEKLLTSNEILTMITALGTGIGRAGATTAGGGADDFN 412

Query: 530 EEDLRYEKVII 540
              LRY ++II
Sbjct: 413 VAKLRYHRIII 423


>gi|19909533|dbj|BAB86962.1| DNA gyrase subunit B [Burkholderia cepacia]
          Length = 394

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 141/405 (34%), Positives = 210/405 (51%), Gaps = 27/405 (6%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK-----------E 197
           ++SGGLHGVG+S VNALS  L +TV R       +F RGI    + +             
Sbjct: 1   KVSGGLHGVGVSCVNALSSWLRLTVRRGGKKRFMEFHRGIAQDRVLEMVDGVEVSPMLVT 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
                RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E    
Sbjct: 61  GDTENRGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD-- 117

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
                F F GG+K +++   + ++ +   IF    EK G     VE A+ W +     + 
Sbjct: 118 -----FAFAGGVKGFVEYINKTKTNLHPTIFHANGEKDGV---GVEVAMQWNDSYNENVL 169

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
            + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV +
Sbjct: 170 CFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKV 229

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP+F+ QTK KLVS + +  VE  +    + +L++ P++A  +   ++E +  R   RK
Sbjct: 230 PEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPLDAKIICGKIVEAARARDAARK 289

Query: 435 QREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            RE+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLR
Sbjct: 290 AREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLR 349

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEK 537
           GK+LNV  A  +K+ +++QI+ LV ALGC         + LRY +
Sbjct: 350 GKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHR 394


>gi|9971295|dbj|BAB12465.1| DNA gyrase B subunit [Pseudospirillum japonicum]
          Length = 381

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 140/392 (35%), Positives = 213/392 (54%), Gaps = 17/392 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS EL +T+ R   +F Q +  G+P  PL+     +   G++I F
Sbjct: 1   VSGGLHGVGVSVVNALSAELDLTIWRAGQVFEQSYQHGVPQYPLKVVGTTKK-SGSQIRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +P P+ F +   F    L K  +  ++L+  V      ++          KE F + GGL
Sbjct: 60  KPSPQTFTNI-EFHYDILAKRLRELSFLNSGVGIYLQDERS-------GRKEHFCYQGGL 111

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K +++    N++ +++          G     VE A+ W +     I  Y N I   +GG
Sbjct: 112 KAFIEHLNRNKNHLNAVFHFSCERDDGI---GVEVALQWNDGFAENIFCYTNNIPQRDGG 168

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH SG R ALTR + +Y E      K  ++   DD       I+SV + +P+F+ QTK K
Sbjct: 169 THLSGFRAALTRSLNQYIEQEGLLKKAKVNTSGDDAREGLTAIVSVKVPDPKFSSQTKDK 228

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIR 445
           LVS + +  VE  +   F  YL++NP E+  +++ +++ +  R   RK R    RK A+ 
Sbjct: 229 LVSSEVKSAVEQEMARCFGEYLLENPKESKAIVDKMLDAARAREAARKAREMTRRKGALD 288

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC +     +E+++VEGDSAGG AKQ R+R  QA+LPL+GKILNV  A  +
Sbjct: 289 IAGLPGKLADCQEKDPALSEIYLVEGDSAGGFAKQGRDRRTQAILPLKGKILNVEKARFD 348

Query: 506 KIRNNQQIMDLVQALGCRT-RSQYREEDLRYE 536
           ++ ++ +I  L+ ALGC   R ++  + LRY 
Sbjct: 349 RMLSSAEIGTLITALGCGIGREEFNPDKLRYH 380


>gi|309253410|gb|ADO60720.1| gyrase subunit B [Micromonospora echinofusca]
          Length = 373

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 194/377 (51%), Gaps = 9/377 (2%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS ++ V + +   ++ Q++    P    +   +  ++ G+ + F PD
Sbjct: 3   GLHGVGVSVVNALSTKMAVEIHKSGFVWRQQYHNSKPTPLEK--GESTDRTGSAVAFWPD 60

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P +F     FD   + +  Q  A+L+  +      ++   E+ G   +  F + GG+  +
Sbjct: 61  PDVFETV-DFDFQTIYRRIQEMAFLNRGLTIHLLDERVPEEEDGRQREVTFCYKGGIADF 119

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++    +++ I   +     E++G    +VE A+ W E     + ++ NTI T EGGTHE
Sbjct: 120 VRHLNASKNPIHKTVVEFGAEEEG---MSVEIAMQWNESYGESVYTFANTINTHEGGTHE 176

Query: 332 SGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
            G R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQTKTKL + 
Sbjct: 177 EGFRAALTSVVNRYGADKKLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNT 236

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRKTAIRKLRL 449
             +  V+    +    +  +NP EA  +++            ++ ++   RK+ +    +
Sbjct: 237 PVKSFVQRVCNEWLVDWFDRNPAEAKIIIQKASQAARARIAAQQARKLARRKSLLESGSM 296

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  
Sbjct: 297 PGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLK 356

Query: 510 NQQIMDLVQALGCRTRS 526
           N ++  L+ ALG     
Sbjct: 357 NNEVQALITALGTGIHD 373


>gi|254055413|gb|ACT64306.1| GryB [Brevibacterium iodinum]
          Length = 385

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 124/386 (32%), Positives = 190/386 (49%), Gaps = 19/386 (4%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG +VVNALS+ L V V R   +++  F RG+P   L++  +  ++ GT +TF PD  I
Sbjct: 1   GVGSTVVNALSERLEVEVRRDGYVWTMDFVRGVPSGELQR-GEATDETGTTVTFWPDGSI 59

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY------------GIPEKEEF 263
           F     F    L    Q  A+L+  +K   + ++                    P    +
Sbjct: 60  FETT-DFSYEYLRARFQQMAFLNKGLKISLTDERHNEVDDDDVQIDENEATEWKPRTVTY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
            +  GL  Y++     +            E ++G     +E A+ W       + +Y N 
Sbjct: 119 EYANGLLDYVEYLNSTKKADLVHPDVIVFEAEEGEQTLALEIAMQWTTSYNESVHTYANV 178

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEF 379
           I T EGGTHE G R ALT  +  YA+  +    +  ++  DD+      ++SV + +P+F
Sbjct: 179 INTHEGGTHEEGFRTALTSLVNAYAKEQKLLRDKDPNLTGDDIREGLTAVISVKLGDPQF 238

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN 439
            GQTKTKL + + +  V+  +RD   H+   NP +A  ++   ++ S+ RL  RK RE  
Sbjct: 239 EGQTKTKLGNSEVKGFVQRVVRDELGHWFESNPAQAKDVVRKALQASQARLAARKAREAT 298

Query: 440 RKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
           R+  +     +PGKL DC       +E+FIVEGDSAGGSA Q RN + QA+LPLRGKILN
Sbjct: 299 RRKGLLESSGMPGKLKDCQSKDPTISEVFIVEGDSAGGSATQGRNPNTQAILPLRGKILN 358

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT 524
           V  A  ++   N ++  ++ A G   
Sbjct: 359 VEKARLDRALGNNEVQAMITAFGTGI 384


>gi|197295762|gb|ACH58591.1| gyrase subunit B [Methylobacterium phyllosphaerae]
          Length = 389

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 139/398 (34%), Positives = 211/398 (53%), Gaps = 21/398 (5%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS  L + + R +   + +F  G  ++PLE       +RGT ++F P 
Sbjct: 1   GLHGVGVSVVNALSSWLRLRIWRNDKEHAMEFRHGDAVAPLEVVGPGNGRRGTEVSFLPS 60

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            + F     FD   L K  +  A+L+  V+   +  +   +K      EE Y+ GG++ +
Sbjct: 61  TETFT-MIEFDYGTLEKRLRELAFLNSGVRIVLTDARHAEKKR-----EELYYEGGIEAF 114

Query: 273 LQTKLENRSLIS--SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
           ++    +R  I   +      +E+ G     VE A  W +     +  + N I   +GGT
Sbjct: 115 VRYLDRSRKPIDGMTSPVVVSSERDGI---RVEVAFWWNDSFNETVLPFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R ALTR +  YAE +    K  +S+  +D       ++SV + +P+F+ QTK KL
Sbjct: 172 HMAGFRAALTRQVTGYAESSGIAKKEKVSLTGEDCREGLTAVISVQVPDPKFSSQTKDKL 231

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRK 446
           VS + +  VEN L +    +L +NP +A  ++  V+  +  R   RK RE   RK A+  
Sbjct: 232 VSSEVRPAVENVLNEGLSTWLEENPSQARSVMAKVVLAASAREAARKARETVTRKGALDI 291

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +      E+ +VEGDSAGGSAKQ R+R+ QAVLPLRGKILNV    +++
Sbjct: 292 ASLPGKLADCQERDPTKCEILLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERVRADR 351

Query: 507 IRNNQQIMDLVQALGCRT------RSQYREEDLRYEKV 538
           + ++ +I  L+ ALG         R  +  E LRY ++
Sbjct: 352 MLSSAEIGTLITALGAGIGRSSTDREGFNPEKLRYHRI 389


>gi|3021624|dbj|BAA25332.1| DNA gyrase B subunit [Pseudomonas putida]
          Length = 381

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 142/393 (36%), Positives = 212/393 (53%), Gaps = 17/393 (4%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P  P++         GT+I F+ 
Sbjct: 1   GGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQEPMKIVGD-SETTGTQIHFKA 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SSETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++         + G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTPVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLAAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK RE+  RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKTREMTRRKGALDIA 288

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+
Sbjct: 289 GLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKM 348

Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 349 ISSQEVGTLITALGCGIGREEYNIDKLRYHNII 381


>gi|297515929|gb|ADI44315.1| gyrase B [Micromonospora sp. FXJ6.011]
          Length = 372

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 116/378 (30%), Positives = 194/378 (51%), Gaps = 9/378 (2%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS ++ V + +   ++ Q++    P    +   +  ++ G+ ++F 
Sbjct: 1   SGGLHGVGVSVVNALSTKMAVEIHKSGFVWRQQYHHSKPTELEK--GETTDRTGSAVSFW 58

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PDP +F     FD   + +  Q  A+L+  +      ++    + G   +  F + GG+ 
Sbjct: 59  PDPDVFETV-DFDFQTIYRRLQEMAFLTRGLTIHLLDERVPEGEEGKTREVTFRYDGGIA 117

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++    +++ I   +     E+ G    ++E A+ W E     + ++ N I T EGGT
Sbjct: 118 DFVRHLNASKNPIHKTVVEFGAEEDG---MSLEIAMQWNESYGESVYTFANNINTHEGGT 174

Query: 330 HESGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           HE G R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQTKTKL 
Sbjct: 175 HEEGFRAALTGIVNRYGADKKLLKGDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLG 234

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKL 447
           +   +  V+    D    +  +NP EA  ++ +           ++ ++   RK+ +   
Sbjct: 235 NTPVKSFVQRVCNDRLVDWFDRNPAEAKTIITKASQAARARIAAQQARKLARRKSLLESG 294

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++
Sbjct: 295 SMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRV 354

Query: 508 RNNQQIMDLVQALGCRTR 525
             N ++  L+ ALG    
Sbjct: 355 LKNNEVQALITALGTGIH 372


>gi|148616480|gb|ABQ96983.1| GyrB [Nocardiopsis umidischolae]
          Length = 388

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 132/394 (33%), Positives = 201/394 (51%), Gaps = 10/394 (2%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y +SGGLHGVG+SVVNALS  L V +     ++ Q +    P   L K  +  ++ GT+
Sbjct: 1   SYAVSGGLHGVGVSVVNALSTALDVEIRVHGHVWRQHYEMTAPTGELVK-GETTDETGTQ 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           ITF PD  IF          L +  Q  A+L+  +      ++      G P    F++ 
Sbjct: 60  ITFWPDGSIFETTTF-TFETLARRMQEMAFLNKGLSITIRDER-PEHTDGGPTVNTFHYE 117

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
            GL  Y++     +    + I + + E  G     VE A+ W +     + ++ NTI T 
Sbjct: 118 DGLSDYVRHINAKKEPAHASIISFEEEGDGI---AVEVAMQWNQSYTSSVHTFANTINTA 174

Query: 326 EGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           EGGTHE G R ALT  + +YA   +   ++  ++  DD+      I+SV + +P+F GQT
Sbjct: 175 EGGTHEEGFRSALTTLVNRYARDQKLLREKDDNLTGDDIREGLTAIISVKLADPQFEGQT 234

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKT 442
           KTKL + +A+  V+    +    +  +NP EA  ++ +           R+ +    RKT
Sbjct: 235 KTKLGNTEAKSFVQKVTNEHLRDWFERNPGEAKDVVSKASQAARARVAARQARDLTRRKT 294

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
            +    LPGKL+DC        E++IVEGDSAGGSAK  RN  NQA+LP+RGKILNV  +
Sbjct: 295 LLETTSLPGKLSDCQSTNPEECEVYIVEGDSAGGSAKGGRNPHNQAILPIRGKILNVEKS 354

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
             ++I  N ++  ++ ALG     ++  E LRY 
Sbjct: 355 RIDRILKNNEVQAIITALGTGIHEEFDAEKLRYH 388


>gi|295083099|gb|ADF78068.1| DNA gyrase subunit B [Edwardsiella tarda]
          Length = 374

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 135/385 (35%), Positives = 208/385 (54%), Gaps = 16/385 (4%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS++L + + R   +  Q +  G+P +PL+       + GTR+ F P  + F +   F
Sbjct: 1   NALSEKLELVIRRDGHVHEQIYHHGVPAAPLKMVGDT-EQTGTRVRFWPSMQTFSNVVEF 59

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  ++L+  V       +   E       + F++ GG+K +++   +N++ 
Sbjct: 60  QYDILAKRLRELSFLNSGVSIRLRDKRNDRE-------DHFHYEGGIKAFVEYLNKNKTP 112

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           I   +F   T K       VE A+ W +     I  + N I   +GGTH +G R A+TR 
Sbjct: 113 IHPNVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRT 169

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +  Y E      K  IS   DD     + ++SV + +P+F+ QTK KLVS + +  VE+ 
Sbjct: 170 LNSYMESEGYTKKNKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESL 229

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458
           + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLADC +
Sbjct: 230 MNERLAEYLLENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQE 289

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ 
Sbjct: 290 RDPAHSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 349

Query: 519 ALGCRT-RSQYREEDLRYEKVIIMT 542
           ALGC   R +Y  + LRY  +IIMT
Sbjct: 350 ALGCGIGRDEYNPDKLRYHSIIIMT 374


>gi|261228548|dbj|BAI44529.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|261228550|dbj|BAI44530.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|261228552|dbj|BAI44531.1| DNA gyrase subunit B [Rhodococcus globerulus]
          Length = 411

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 128/417 (30%), Positives = 206/417 (49%), Gaps = 34/417 (8%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVGISVVNALS  L V +      + Q ++   P      +     + GT ++F  
Sbjct: 1   GGLHGVGISVVNALSTRLDVDIKVDGYRWQQTYTDSKPGEL--VQGDPTKETGTTVSFWA 58

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------------------- 249
           DP+IF     ++   + +  Q  A+L+  +    + ++                      
Sbjct: 59  DPEIFETTR-YNFETVARRLQEMAFLNKGLTITLTDERAEVIDDEAAEVGEAPKSAAEEA 117

Query: 250 --EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307
                      +   +++PGGL+ Y++   ++++ I + +     +  G     +E A+ 
Sbjct: 118 EEAAQAAPRKSKTRIYHYPGGLEDYVRHINKSKTPIHNSVVGFTAKGTGH---ELEVAMQ 174

Query: 308 WCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMI 364
           W       + ++ NTI T EGGTHE G R ALT  + KY   +     +   +  DD+  
Sbjct: 175 WNSGYSESVHTFANTINTHEGGTHEEGFRAALTATVNKYALEKKLLKDKDPKLTGDDIRE 234

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
               I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  ++   + 
Sbjct: 235 GLAAIISVKVGEPQFEGQTKTKLGNTEVKSFVQKACNEHLAHWFEANPADAKTIVNKAVS 294

Query: 425 RSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483
            ++ R+  RK RE V RK+A     LPGKLADC  N    +E++IVEGDSAGGSAK  R+
Sbjct: 295 SAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPEKSEIYIVEGDSAGGSAKSGRD 354

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
              QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 SMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDIAKLRYHKIVL 411


>gi|311358941|gb|ADP94159.1| GyrB [Pseudomonas putida]
          Length = 381

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 137/387 (35%), Positives = 209/387 (54%), Gaps = 15/387 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS++L +TV R   I+ Q +  G+P +P+          GT I F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGD-SETTGTHIHF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +P  + F +   F    L K  +  ++L+  V      ++   E       E F + GGL
Sbjct: 60  KPSAETFKNIH-FSWDILAKRIRELSFLNSGVGILLKDERSGKE-------EFFKYEGGL 111

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           + +++    N++ ++S++F    ++       VE A+ W +     +  + N I   +GG
Sbjct: 112 RAFVEYLNTNKTPVNSQVFHFNVQRDD--GVGVEVALQWNDSFNENLLCFTNNIPQRDGG 169

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH  G R +LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK K
Sbjct: 170 THLVGFRSSLTRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDK 229

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIR 445
           LVS + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+ 
Sbjct: 230 LVSSEVKTAVEQEMNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALD 289

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +
Sbjct: 290 IAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFD 349

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREED 532
           K+ ++Q++  L+ ALGC    +    D
Sbjct: 350 KMISSQEVGTLITALGCGIGREEYNID 376


>gi|212659909|gb|ACJ37011.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 267

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 92/278 (33%), Positives = 150/278 (53%), Gaps = 13/278 (4%)

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ I V +  +G ++V DNGRGIPV+ H K    S  E+ILT LHAGGKFD+++Y++SGG
Sbjct: 1   ADSILVKIHVDGSVSVSDNGRGIPVDIH-KEEGVSAAEVILTVLHAGGKFDDNSYKVSGG 59

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS+ L + + R    + Q++  G P  PL++  +V  KRGT + F+P  
Sbjct: 60  LHGVGVSVVNALSERLWLDIWRDGYHYQQEYVLGDPQYPLKQL-EVSAKRGTTLRFKPAK 118

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IF D   F    L K  +  ++L+  +K     ++          +++F++ GG+++++
Sbjct: 119 EIFSD-VEFHYENLAKRLRELSFLNSGLKVSLIDERG------EGRRDDFHYEGGIRSFV 171

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   + ++ + S + +   E  G     V+ A+ W +     +  + N I   +GGTH +
Sbjct: 172 EHLAQLKTPLHSNVISVTGEHNGI---VVDVALQWTDAYQETMYCFTNNIPQKDGGTHLA 228

Query: 333 GLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
           G R ALTR +  Y E     R   I      +    I 
Sbjct: 229 GFRAALTRTLGNYIEQNGIARQAKITFSGDDMREGMIA 266


>gi|6644322|gb|AAF21007.1|AF208256_1 DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 384

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 141/386 (36%), Positives = 212/386 (54%), Gaps = 16/386 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGV +SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F 
Sbjct: 1   SGGLHGVCVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGNSTG-TGTEVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P P IF D   F+   L K  +  ++L+  V      +++  E         F + GG+K
Sbjct: 60  PSPTIFSDTL-FNYEILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIK 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ +  ++F   TE+ G     VE A+ W +     +  + N I    GGT
Sbjct: 112 AFVEYLNQNKTPMHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQPNGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R ALTR +  Y E      K   +   DD+    + ++SV + +P+F+ QTK KL
Sbjct: 169 HLVGFRTALTRTLNSYMEKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
           VS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+  
Sbjct: 229 VSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDI 288

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 289 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 348

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED 532
           + ++Q++  L+ ALGC         D
Sbjct: 349 MISSQEVGTLITALGCGIGRDEYNPD 374


>gi|208609659|dbj|BAG72205.1| gyrase B [Methylobacterium sp. RB129]
          Length = 395

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 140/404 (34%), Positives = 212/404 (52%), Gaps = 17/404 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS  L + + R     + +F  G  ++PL       ++RG
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSSWLRLRIWRAGQEHAMEFRHGDAVAPLAAVGPANDRRG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T ++F P  + F     FD A L K  +  A+L+  V+   +  +    K          
Sbjct: 61  TEVSFLPSTETFTQV-EFDYATLEKRLRELAFLNSGVRIVLTDARHAEHKRDE-----LV 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG++ +++     +  +       + E+ G     VE A+ W +   E    + N I 
Sbjct: 115 YDGGVEAFVRYLDRAKPALIEAPIVLRQERDGI---GVEVALWWNDSYHENVLCFTNNIP 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR I  YAE +    +  +S+  DD       ++SV + +P+F+ 
Sbjct: 172 QRDGGTHLAGFRAALTRQITGYAESSGVTKREKVSLTGDDCREGLTAVVSVKVPDPKFSS 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTK KLVS + +  VE  L +    +L ++P EA  +   V   +  R   RK R+   R
Sbjct: 232 QTKDKLVSSEVRPAVEGVLNETLGSWLEEHPSEARTIAAKVALAAAAREAARKARDLTTR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +      E+ +VEGDSAGGSAKQ R+R+ QAVLPLRGKILNV 
Sbjct: 292 KGALDIASLPGKLADCQERDPSKCEILLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT----RSQYREEDLRYEKVII 540
            A  +K+ ++Q+I  L+ ALG          +  + LRY ++II
Sbjct: 352 RARLDKMLSSQEIGTLITALGTGIGRDGAHAFNPDKLRYHRIII 395


>gi|119226136|dbj|BAF41047.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|261228538|dbj|BAI44524.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|261228540|dbj|BAI44525.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|261228542|dbj|BAI44526.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|261228544|dbj|BAI44527.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|261228546|dbj|BAI44528.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|261228554|dbj|BAI44532.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|261228556|dbj|BAI44533.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|261228558|dbj|BAI44534.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|261228560|dbj|BAI44535.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|261228562|dbj|BAI44536.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|261228564|dbj|BAI44537.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|261228566|dbj|BAI44538.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|261228568|dbj|BAI44539.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|261228570|dbj|BAI44540.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|261228572|dbj|BAI44541.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|261228574|dbj|BAI44542.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|261228576|dbj|BAI44543.1| DNA gyrase subunit B [Rhodococcus erythropolis]
 gi|261228578|dbj|BAI44544.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 411

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 128/417 (30%), Positives = 206/417 (49%), Gaps = 34/417 (8%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVGISVVNALS  L V +      + Q ++   P      +     + GT ++F  
Sbjct: 1   GGLHGVGISVVNALSTRLDVDIKVDGYRWQQTYTDSKPGEL--VQGDPTKETGTTVSFWA 58

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------------------- 249
           DP+IF     ++   + +  Q  A+L+  +    + ++                      
Sbjct: 59  DPEIFETTR-YNFETVARRLQEMAFLNKGLTITLTDERAEVIDDEAAEVAEAPKSAAEEA 117

Query: 250 --EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307
                      +   +++PGGL+ Y++   ++++ I + +     +  G     +E A+ 
Sbjct: 118 EEAAQAAPRKSKTRIYHYPGGLEDYVRHINKSKTPIHNSVVGFTAKGTGH---ELEVAMQ 174

Query: 308 WCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMI 364
           W       + ++ NTI T EGGTHE G R ALT  + KY   +     +   +  DD+  
Sbjct: 175 WNSGYSESVHTFANTINTHEGGTHEEGFRAALTATVNKYALEKKLLKDKDPKLTGDDIRE 234

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
               I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  ++   + 
Sbjct: 235 GLAAIISVKVGEPQFEGQTKTKLGNTEVKSFVQKACNEHLAHWFEANPADAKTIVNKAVS 294

Query: 425 RSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483
            ++ R+  RK RE V RK+A     LPGKLADC  N    +E++IVEGDSAGGSAK  R+
Sbjct: 295 SAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPEKSEIYIVEGDSAGGSAKSGRD 354

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
              QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 SMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDIAKLRYHKIVL 411


>gi|113912343|gb|ABI48368.1| DNA gyrase subunit B [Pseudomonas fragi]
          Length = 383

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 140/395 (35%), Positives = 212/395 (53%), Gaps = 17/395 (4%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P +P+    +     GT+I 
Sbjct: 1   KVSGGLHGVGVSVVNALSELLVLTVRRSGKIWEQTYVHGVPQAPMAIVGE-SETTGTQIH 59

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F+P  + F +   F    L K  +  ++L+  V      ++   E       E F + GG
Sbjct: 60  FKPSAETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGG 111

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           L+ ++     N++ ++         + G     VE A+ W +     +  + N I   +G
Sbjct: 112 LRAFVDYLNTNKNPVNQVFHFNVQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDG 168

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH  G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK 
Sbjct: 169 GTHLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKD 228

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAI 444
           KLVS + +  VE  +   F  +L+++P EA  ++  +I+ +  R   RK R    RK A+
Sbjct: 229 KLVSSEVKTAVEQEMGKFFSDFLLEHPNEAKLIVGKMIDAARAREAARKAREMTRRKGAL 288

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  
Sbjct: 289 DIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARF 348

Query: 505 EKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
           +K+ ++Q++  L+ ALGC   R +Y  + LRY  +
Sbjct: 349 DKMISSQEVGTLITALGCGIGREEYNIDKLRYHNI 383


>gi|221061813|ref|XP_002262476.1| DNA gyrase subunit b [Plasmodium knowlesi strain H]
 gi|193811626|emb|CAQ42354.1| DNA gyrase subunit b, putative [Plasmodium knowlesi strain H]
          Length = 992

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 151/586 (25%), Positives = 240/586 (40%), Gaps = 110/586 (18%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           A  K  +  Y  S GLHGVG+SV NALS  + V V R   I S +  +G  ++PL  +E 
Sbjct: 265 ASQKSASQMYRFSSGLHGVGLSVANALSSFMKVKVFRGGKIHSIELEKGKVVTPLSVREC 324

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE-------- 250
             +KRGT+I ++PD  IF +    +A  +       AYL+ R+   +  ++         
Sbjct: 325 PVSKRGTQIHYKPDHDIFKNTIRHNAELIKNRIHQLAYLNDRLTFYFYDERSAKKVPTSV 384

Query: 251 --------------------------IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
                                               E     GGL  Y+++  +N++ + 
Sbjct: 385 HLAKGNEADEVDKREDKTTDAVNTTVEHNNLDFYPYEVIKHEGGLNEYMESLTKNKASLF 444

Query: 285 SEIF---TGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
            +     +    +K  H   +       + +  I S+ N + T +GGTH   ++ A++R 
Sbjct: 445 KDSNKIISISCHQKNVH-IDLRIKWTQGQYHEHIVSFVNNVNTTDGGTHVDAMKYAISRC 503

Query: 342 IK-KYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
           +     +    K  ++I  + +      ILS+ +  PEF GQTKTKL S   +  +E+A+
Sbjct: 504 VNFNIKKNEATKNFVNIPGEYIREGMTAILSIKMNNPEFEGQTKTKLGSHFLKPILESAI 563

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE--VNRKTAIRKLRLPGKLADCSQ 458
            +         P     +    ++        +  R+   ++        LPGKL DC  
Sbjct: 564 FEKLSEIFDFEPNLLNTIYLKALQAKASDEEAKAARDLIRSKNNQYYSTILPGKLVDCIS 623

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK-IRNNQQIMDLV 517
           +  +  E+FIVEGDSA GSAKQARNR  QA+LPL+GKILNV    + K I  N ++  L+
Sbjct: 624 DDINRNEIFIVEGDSAAGSAKQARNREIQAILPLKGKILNVEKIKNNKRIFENSELKSLI 683

Query: 518 QALGCRTRSQY---------------------------------------------REED 532
            A+G                                                     +  
Sbjct: 684 TAIGLSISCDNSKMAKGKNMLNNKKKDIKKKYDLKCSKKENVQVNNAMVNKKKNTLFDTP 743

Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG------- 585
           LRY K+IIMTDADVDG HI  LLLTF Y+   ++I+  ++F+  PPL+++T         
Sbjct: 744 LRYGKIIIMTDADVDGEHIRILLLTFLYRFQKNIIQNGNVFVACPPLYKVTYNRFFDNTI 803

Query: 586 ---------------TKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616
                             ++ + ++    +L   +K      E  R
Sbjct: 804 KETVMKQFNVSTRNSKTLIHTYSDDELNVLLGLLEKDRSSHAE-QR 848



 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 53/105 (50%), Positives = 68/105 (64%), Gaps = 1/105 (0%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
            +YDA  I ILEGLE VR RPGMYIG TD K LH +  E+IDN++DE      N I++ +
Sbjct: 109 KDYDAKDIVILEGLEAVRKRPGMYIGNTDVKGLHQILFEIIDNSVDEYNNFECNEIKIVI 168

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146
             +  +T+ DNGRGIP + H K   KS LE +LT LH+G KF + 
Sbjct: 169 HEDESVTIEDNGRGIPCDIHEK-TKKSALETVLTVLHSGAKFVDE 212



 Score = 99.5 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 4/68 (5%)

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669
            + EI RFKGLGEM+A QL  T MD + R L+RV +N  + +        + LMG  +  
Sbjct: 924 KRYEIQRFKGLGEMMADQLWSTTMDPSVRKLIRVTVNDAMRAN---NLIFS-LMGEDSKL 979

Query: 670 RFKFIQER 677
           R  FI E 
Sbjct: 980 RKSFILEN 987


>gi|62085696|gb|AAX63240.1| DNA gyrase subunit B [Gordonia terrae]
          Length = 426

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 141/431 (32%), Positives = 214/431 (49%), Gaps = 39/431 (9%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKFD+  Y +SGGLHGVGISVVNALS ++ + +      + Q ++   P +  +   
Sbjct: 1   HAGGKFDSDAYAVSGGLHGVGISVVNALSTKVELEIQNDGFNWEQTYTYATPGALEK--G 58

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-------- 249
               K GT + F PDP+IF +   F+A  + +  Q  A+L+  +    +  +        
Sbjct: 59  TPTRKTGTTVRFWPDPEIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAIEPPG 118

Query: 250 ---------------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
                                E A     P+   +++P GL  Y++     +  I + + 
Sbjct: 119 DADGDEESGTTEAAEAVKSEEEKAAAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHTTVV 178

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
               +  G     VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA 
Sbjct: 179 GFTGQGTGH---EVEVAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTLTVNKYAV 235

Query: 348 LTQN---KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF 404
             +    K+   +  DD+      ++SV + +P+F GQTKTKL + + +  V+    +  
Sbjct: 236 DKKLIKDKKEDRLSGDDIREGLAAVISVKVGDPQFEGQTKTKLGNTEVKGFVQRVCSEHL 295

Query: 405 DHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHG 463
            H+L  NP EA  +++ ++E    R+  R  R+ V RKTA     LPGKLADC  N    
Sbjct: 296 GHWLEANPAEAKTIIKKIVESQRARMAARNARDLVRRKTATDIGGLPGKLADCRSNDPSK 355

Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523
            E++IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G  
Sbjct: 356 CEVYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTG 415

Query: 524 TRSQYREEDLR 534
              ++    LR
Sbjct: 416 IHDEFDISKLR 426


>gi|46367521|emb|CAG25882.1| DNA gyrase subunit B [Yersinia frederiksenii]
 gi|46367527|emb|CAG25885.1| DNA gyrase subunit B [Yersinia frederiksenii]
          Length = 346

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 125/357 (35%), Positives = 194/357 (54%), Gaps = 15/357 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS++L + + R+  +  Q +  G+P +PL+   +  ++ GT + F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYRMGVPQAPLKVVGET-DQTGTTVRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F +   F    L K  +  ++L+  V       +   E       + F++ GG+
Sbjct: 60  WPSFETFTNNTEFQYEILAKRLRELSFLNSGVSIKLRDKRNDRE-------DHFHYEGGI 112

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K +++   +N++ I  ++F   T K       VE A+ W +     I  + N I   +GG
Sbjct: 113 KAFVEYLNKNKTPIHPKVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGG 169

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH  G R A+TR +  Y +      K  IS   DD     + ++SV + +P+F+ QTK K
Sbjct: 170 THLVGFRTAMTRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDK 229

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIR 445
           LVS + +  VE  + +    YL++NP +A  ++  +I+        R+ +    RK A+ 
Sbjct: 230 LVSSEVKTAVETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALD 289

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
              LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 LAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 346


>gi|270017268|gb|ACZ58151.1| DNA gyrase subunit B [Gordonia sp. CC-NAPH129-6]
          Length = 426

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 141/431 (32%), Positives = 214/431 (49%), Gaps = 39/431 (9%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKFD+  Y +SGGLHGVGISVVNALS ++ + +      + Q ++   P +  +   
Sbjct: 1   HAGGKFDSDAYAVSGGLHGVGISVVNALSTKVELEIQNDGFNWEQTYTYATPGALEK--G 58

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-------- 249
               K GT + F PDP+IF +   F+A  + +  Q  A+L+  +    +  +        
Sbjct: 59  TPTRKTGTTVRFWPDPEIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAIEPPG 118

Query: 250 ---------------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
                                E A     P+   +++P GL  Y++     +  I + + 
Sbjct: 119 DADGDEESGTTEAAEVVKSEEEKAAAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHTTVV 178

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
               +  G     VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA 
Sbjct: 179 GFTGQGTGH---EVEVAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTLTVNKYAV 235

Query: 348 LTQN---KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF 404
             +    K+   +  DD+      ++SV + +P+F GQTKTKL + + +  V+    +  
Sbjct: 236 DKKLIKDKKEDRLSGDDIREGLAAVISVKVGDPQFEGQTKTKLGNTEVKGFVQRVCSEHL 295

Query: 405 DHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHG 463
            H+L  NP EA  +++ ++E    R+  R  R+ V RKTA     LPGKLADC  N    
Sbjct: 296 GHWLEANPAEAKTIIKKIVESQRARMAARNARDLVRRKTATDIGGLPGKLADCRSNDPSK 355

Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523
            E++IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G  
Sbjct: 356 CEVYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTG 415

Query: 524 TRSQYREEDLR 534
              ++    LR
Sbjct: 416 IHDEFDISKLR 426


>gi|51571569|emb|CAH18951.1| gyrase B [Corallococcus coralloides]
          Length = 367

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 127/378 (33%), Positives = 199/378 (52%), Gaps = 16/378 (4%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y++SGGLHGVG++ VN LS+   V V R   ++ Q ++RG+     ++     +K GT
Sbjct: 1   GAYKVSGGLHGVGVTCVNFLSEWFKVRVQRAGKVYEQSYARGVSNGSPQEVG-TTDKVGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            I F+PD  +      F+   L +  +  A+L+  +      ++   E         F F
Sbjct: 60  TIHFKPDSTVMETV-DFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD-------FKF 111

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG+ ++++   + +  +  +    K+E++G    ++E A+ W +     I ++ N I T
Sbjct: 112 DGGISSFVEYLNKAKEALHDKPVYIKSEREGV---SLEIAMQWNDGYDERIFTFANNINT 168

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQ 382
            EGG+H SG + ALTR +  YAE     + +      +D       ++SV +  P+F GQ
Sbjct: 169 HEGGSHLSGFKAALTRTLNSYAEKGGLWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQ 228

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRK 441
           TKTKL + + +  VE  + D    +L +NP  A K++  +          R+ +  V RK
Sbjct: 229 TKTKLGNSEVKGLVEQMVNDQLASFLEENPPLAKKVVVKIGDACRARIAARKARETVRRK 288

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC     H +EL+IVEGDSAGGSAKQ R+R NQA+LPLRGKILNV  
Sbjct: 289 GVLDGGGLPGKLADCQSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEK 348

Query: 502 AGSEKIRNNQQIMDLVQA 519
           A  EK+  + +I+ L+ A
Sbjct: 349 ARFEKMLTSAEIVTLITA 366


>gi|213391518|gb|ACJ46500.1| gyrase B subunit [Pseudoalteromonas sp. BSw10087]
          Length = 366

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 130/368 (35%), Positives = 205/368 (55%), Gaps = 15/368 (4%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKFD+++Y++SGGLHGVG+SVVNALS++L +T+ R+  +  Q +S G+P +PL    
Sbjct: 8   HAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKLTIRREGKLHEQTYSHGVPDAPLAVIG 67

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
              +  GT + F P  + F +   F    L K  +  ++L+  V    + ++E       
Sbjct: 68  DA-DTTGTELRFWPSDQTFTN-LDFHYDILAKRLRELSFLNSGVSIILNDERE------E 119

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
            + + F + GG++ +++    N++ I   +F     ++      V  ++ W +     I 
Sbjct: 120 NKSDHFKYEGGIRAFVEYLNRNKTPIHKGVFHFTHTRE-EDGIVVGVSMQWNDAYQENIY 178

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYA----ELTQNKRAISIISDDLMISAVGILSV 372
            + N I   +GGTH +G R ALTR +  Y        + K   +   DD       ++SV
Sbjct: 179 CFTNNIPQRDGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSV 238

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLR 431
            + +P+F+ QTK KLVS + +  VE A+ + F  +L+++P +A  ++  +I+ S      
Sbjct: 239 KVPDPKFSSQTKDKLVSSEVKSAVEQAIAEKFTEFLLEHPTDAKIVVGKIIDASRAREAA 298

Query: 432 RRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LP
Sbjct: 299 RKAREMTRRKGAMDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILP 358

Query: 492 LRGKILNV 499
           L+GKILNV
Sbjct: 359 LKGKILNV 366


>gi|321401444|gb|ADW83184.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
          Length = 359

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 140/363 (38%), Positives = 201/363 (55%), Gaps = 10/363 (2%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA-RQNTIFSQKFSRGIPLSPLEKKE 197
           AGGKFD  +Y++SGGLHGVG+SVVNALS+ L  TV      I+ Q++ +G  L P+++  
Sbjct: 2   AGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGKIYEQEYEKGKALYPVKQIG 61

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +    RGT +TF PDP IF     +    L    +  ++L+  +   ++  +E  +K G 
Sbjct: 62  ETTK-RGTIVTFYPDPSIFTQTIEYSYDTLSARMRELSFLNKGITITFTDKRE-KDKDGN 119

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
              E F+   GLK Y++    NR      I    +         VE A+ +       I 
Sbjct: 120 FVSEIFHSTEGLKEYIRYLDGNRE---PIIAHVISMDNDKGEIPVEVALIYNTSYTENIF 176

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFI 374
           SY N I T EGGTH  G R  LTR +KKYA+ +    K    I  DD       I+SV +
Sbjct: 177 SYVNNINTHEGGTHLQGFRTGLTRSLKKYADSSGMLDKLKFEISGDDFREGLTAIISVKV 236

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP+F GQTKTKL + +    V  A+ D  ++YL +NP +A  +++ VI  ++ R   +K
Sbjct: 237 AEPQFEGQTKTKLGNREVVSPVSQAVGDMIENYLEENPNDARIIVQKVILAAQARHAAKK 296

Query: 435 QREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            RE+ ++  +     LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLR
Sbjct: 297 AREMVQRKTVWGGGGLPGKLSDCSEQDPAKCEVFLVEGDSAGGTAKQGRDRAFQAILPLR 356

Query: 494 GKI 496
           GKI
Sbjct: 357 GKI 359


>gi|259018138|gb|ACV89661.1| DNA gyrase subunit B [Nocardia mexicana]
          Length = 415

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 128/421 (30%), Positives = 206/421 (48%), Gaps = 34/421 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L   +      ++Q++    P      +     + G
Sbjct: 1   SESYAVSGGLHGVGISVVNALSTRLQADIDYGGYHWTQEYKDAKPGKL--VQGDATKRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------ 258
           T I F  DP IF     ++   + +  Q  A+L+  +    +  +    +          
Sbjct: 59  TTIRFWADPDIFETTF-YNFETVSRRLQEMAFLNKGLTITLTDQRVTESEITEEVVSDTA 117

Query: 259 ------------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                             +   +++PGGL+ +++     +  I + +    ++  G    
Sbjct: 118 EAPKHAEGEAAAAAEQKVKTRTYHYPGGLEDFVKHINRTKQAIHNTVVGFTSKGTGH--- 174

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SI 357
            +E A+ W       + ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++
Sbjct: 175 ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLIKDKDGNL 234

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  
Sbjct: 235 TGDDIREGLAAIVSVKVGEPQFEGQTKTKLGNTEVKSFVQRTCNENLAHWFEANPADAKT 294

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           +++  +  ++ R+  RK RE V RK+A     LPGKLADC       +E++IVEGDSAGG
Sbjct: 295 IVQKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPRLSEIYIVEGDSAGG 354

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY 
Sbjct: 355 SAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYH 414

Query: 537 K 537
           K
Sbjct: 415 K 415


>gi|4996774|dbj|BAA78432.1| subunit B protein of DNA gyrase [bacterium rJ1]
          Length = 216

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 76/202 (37%), Positives = 113/202 (55%), Gaps = 16/202 (7%)

Query: 70  DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPN 126
           D   LHHL  EV+DN++DE +AG+ + I V++  +  ++V DNGRGIP          P 
Sbjct: 3   DGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHSDNSVSVTDNGRGIPTGVKMDDKHEPK 62

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
           +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV R+  +   +FSR
Sbjct: 63  RSASEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKMLRLTVRREGKVHVLEFSR 122

Query: 187 ------------GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
                       G+ +SP++      +KRGT + F PD  IF + + F    L K  +  
Sbjct: 123 GFVQNRLIETVDGVEVSPMKVTGDT-DKRGTEVHFLPDTDIFKENSDFHYEILAKRLREL 181

Query: 235 AYLSGRVKTCWSCDKEIAEKYG 256
           ++L+  V+     ++   E   
Sbjct: 182 SFLNNGVRIRLKDERTGKEDDF 203


>gi|212659902|gb|ACJ37009.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 268

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 92/278 (33%), Positives = 150/278 (53%), Gaps = 13/278 (4%)

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ I V +  +G ++V DNGRGIPV+ H K    S  E+ILT LHAGGKFD+++Y++SGG
Sbjct: 3   ADSILVKIHVDGSVSVSDNGRGIPVDIH-KEEGVSAAEVILTVLHAGGKFDDNSYKVSGG 61

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS+ L + + R    + Q++  G P  PL++  +V  KRGT + F+P  
Sbjct: 62  LHGVGVSVVNALSERLWLDIWRDGYHYQQEYVLGDPQYPLKQL-EVSAKRGTTLRFKPAK 120

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IF D   F    L K  +  ++L+  +K     ++          +++F++ GG+++++
Sbjct: 121 EIFSD-VEFHYENLAKRLRELSFLNSGLKVSLIDERG------EGRRDDFHYEGGIRSFV 173

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   + ++ + S + +   E  G     V+ A+ W +     +  + N I   +GGTH +
Sbjct: 174 EHLAQLKTPLHSNVISVTGEHNGI---VVDVALQWTDAYQETMYCFTNNIPQKDGGTHLA 230

Query: 333 GLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
           G R ALTR +  Y E     R   I      +    I 
Sbjct: 231 GFRAALTRTLGNYIEQNGIARQAKITFSGDDMREGMIA 268


>gi|321401430|gb|ADW83177.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
          Length = 357

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 141/361 (39%), Positives = 200/361 (55%), Gaps = 10/361 (2%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA-RQNTIFSQKFSRGIPLSPLEKKE 197
           AGGKFD  +Y++SGGLHGVG+SVVNALS+ L  TV      I+ Q++ +G  L P+++  
Sbjct: 2   AGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGKIYEQEYEKGKALYPVKQIG 61

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +    RGT +TF PDP IF     +    L    +  ++L+  +   ++  +E  +K G 
Sbjct: 62  ETTK-RGTIVTFYPDPSIFTQTIEYSYDTLSARMRELSFLNKGITITFTDKRE-KDKDGN 119

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
              E F+   GLK Y++    NR      I    +         VE A+ +       I 
Sbjct: 120 FVSEIFHSTEGLKEYIRYLDGNRE---PIIAHVISMDNDKGEIPVEVALIYNTSYTENIF 176

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFI 374
           SY N I T EGGTH  G R  LTR +KKYA+ +    K    I  DD       I+SV +
Sbjct: 177 SYVNNINTHEGGTHLQGFRTGLTRSLKKYADSSGMLDKLKFEISGDDFREGLTAIISVKV 236

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP+F GQTKTKL + +    V  A+ D  ++YL +NP +A  +++ VI  ++ R   +K
Sbjct: 237 AEPQFEGQTKTKLGNREVVSPVSQAVGDMIENYLEENPNDARIIVQKVILAAQARHAAKK 296

Query: 435 QREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            RE+  RKT +    LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLR
Sbjct: 297 AREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVFLVEGDSAGGTAKQGRDRAFQAILPLR 356

Query: 494 G 494
           G
Sbjct: 357 G 357


>gi|212712616|ref|ZP_03320744.1| hypothetical protein PROVALCAL_03711 [Providencia alcalifaciens DSM
           30120]
 gi|212684832|gb|EEB44360.1| hypothetical protein PROVALCAL_03711 [Providencia alcalifaciens DSM
           30120]
          Length = 486

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 108/245 (44%), Positives = 160/245 (65%), Gaps = 2/245 (0%)

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
            + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ 
Sbjct: 1   MIAVISVKVPDPKFSSQTKEKLVSSEVKTAVETLMNEKLVEYLLENPNDAKIVVGKIIDA 60

Query: 426 SEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           +  R   RK R    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR
Sbjct: 61  ARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNR 120

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTD 543
            NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTD
Sbjct: 121 KNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTD 180

Query: 544 ADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEE 603
           ADVDG+HI +LLLTFFY++M +++E+ H+F+  PPL+++ +G +  Y  D+E     L  
Sbjct: 181 ADVDGSHIRTLLLTFFYRQMPEIVERGHIFIAQPPLYKVKRGKQEQYIKDDEAMDDYLIS 240

Query: 604 FKKHG 608
               G
Sbjct: 241 IALDG 245



 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ LE   +  +  + + R+KGLGEM   QL ET M+   R ++RV I   +     T 
Sbjct: 401 FEQALEWLSRESRRGLSVQRYKGLGEMNPEQLWETTMNPETRRMMRVTIKDAI----ATD 456

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 457 QLFTTLMGDAVEPRRAFIEENALKAANID 485


>gi|3985982|dbj|BAA34867.1| DNA gyrase subunit B protein [Nitrosomonas sp. HPCv101]
          Length = 389

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 138/401 (34%), Positives = 222/401 (55%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+ L +T+ R+  I   +F  G+ ++PL    +   + G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEWLRLTIYRKGNIHQIEFRDGVAVAPLAITGQTEKQ-G 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F     IFGD   +      +  +  ++L+  +K   +  ++  E       E F 
Sbjct: 60  TEVHFLASKLIFGDIT-YHYDIFARRLRELSFLNYGIKIRLADRRDNRE-------EIFA 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           F GG++ +++     ++++   IF  K  K      TVE A+ W +    ++  + N I 
Sbjct: 112 FSGGIRNFVEYINRTKTVLHPNIFYAKGMKDDI---TVEIAMQWNDSYAEQVLCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +GLR A+TR +  Y E  +   K  +    DD+      +LS+ + EP+F+ 
Sbjct: 169 QKDGGTHLTGLRAAMTRTLNNYIEKNELAKKAKVDTTGDDMREGMTCVLSIKLFEPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK KLVS + +  VE  +      +L++NP EA  +   +IE +  R   RK RE+ R+
Sbjct: 229 QTKEKLVSSEVRPVVEEVVSHKLSDFLLENPNEAKIICNKIIEAARAREAARKARELTRR 288

Query: 442 TA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
              +  + LPGKLADC +      EL++VEGDSAGGSAKQ R+R  QA++PL+GKILNV 
Sbjct: 289 KGVLDSMGLPGKLADCQEKDPKLCELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVII 540
            +  +K+ ++Q+I+ L+ ALG          + LRY ++II
Sbjct: 349 KSRFDKLISSQEIVALITALGTGIGKDEYNLDKLRYHRIII 389


>gi|148536430|gb|ABQ85767.1| DNA gyrase subunit B [Aliivibrio fischeri]
          Length = 382

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 140/392 (35%), Positives = 215/392 (54%), Gaps = 15/392 (3%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS+++ +T+ R   I  Q +  G P +PL    K  +  GT+I F 
Sbjct: 1   SGGLHGVGVSVVNALSEKVELTIHRAGEIHQQVYHHGEPEAPLAVIGKT-DTTGTKIRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F    L K  +  ++L+  V       +E        + + F + GG++
Sbjct: 60  PSEETFTNVV-FVYEILAKRLRELSFLNSGVSIKLQDMRE------EDKADHFMYEGGIQ 112

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            ++Q    N++ I  ++F   +E++     +VE ++ W +     I  + N I   +GGT
Sbjct: 113 AFVQHLNRNKTPIHQKVFHFDSERED--GISVEVSMQWNDGFQENIYCFTNNIPQRDGGT 170

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QTK KL
Sbjct: 171 HLAGFRSALTRTLNTFMDKEGFSKKAKAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKL 230

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRK 446
           VS + +  VE+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK A+  
Sbjct: 231 VSSEVKSAVESAMGEKLSEFLAENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDI 290

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 291 AGLPGKLADCQEKDPGLSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKASFDK 350

Query: 507 IRNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537
           + +++++  L+ ALGC   R +Y  + LRY  
Sbjct: 351 MLSSREVGTLITALGCGIGRDEYNPDKLRYHN 382


>gi|46367519|emb|CAG25881.1| DNA gyrase subunit B [Yersinia enterocolitica]
          Length = 346

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 125/357 (35%), Positives = 194/357 (54%), Gaps = 15/357 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS++L + + R+  +  Q +  G+P +PL+   +  ++ GT + F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DQTGTTVRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F +   F    L K  +  ++L+  V       +   E       + F++ GG+
Sbjct: 60  WPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDKRNDKE-------DHFHYEGGI 112

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K +++   +N++ I  ++F   T K       VE A+ W +     I  + N I   +GG
Sbjct: 113 KAFVEYLNKNKNPIHPKVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGG 169

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH  G R A+TR +  Y +      K  IS   DD     + ++SV + +P+F+ QTK K
Sbjct: 170 THLVGFRTAMTRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDK 229

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIR 445
           LVS + +  VE  + +    YL++NP +A  ++  +I+        R+ +    RK A+ 
Sbjct: 230 LVSSEVKTAVETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALD 289

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
              LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 LAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 346


>gi|157073807|dbj|BAF79902.1| gyrase B [Methylobacterium suomiense]
          Length = 399

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 143/408 (35%), Positives = 218/408 (53%), Gaps = 21/408 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS  L + + R       +F  G  ++PLE      ++RG
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSVSLKLRIWRAGKEHRMEFRHGDAVAPLEVVGPAGDRRG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF P P+ F     FD   L K  +  A+L+  V+   +  +    K      EE  
Sbjct: 61  TEVTFTPSPETF-TMVEFDYPTLEKRLRELAFLNSGVRIVLTDARHAEHKR-----EELC 114

Query: 265 FPGGLKTYLQTKLENRSLIS--SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           + GG++ +++    +R  +   ++  T   E+ G     VE A  W +     +  + N 
Sbjct: 115 YEGGVEAFVRYLDRSRKSVEGMAKPVTVLGERDGI---RVEVAFWWNDSFNETVLPFTNN 171

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R ALTR I  YAE +    K  +S+  DD       ++SV + +P+F
Sbjct: 172 IPQRDGGTHMAGFRAALTRQITGYAESSGIAKKEKVSLTGDDCREGLTAVISVQVPDPKF 231

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK-LLEWVIERSEERLRRRKQREV 438
           + QTK KLVS + +  VEN L +    +L +NP +A   + + V+  +     R+ +  +
Sbjct: 232 SSQTKDKLVSSEVRPAVENILNEGLSTWLEENPSQARSVMAKVVLAAAAREAARKARETI 291

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +      EL +VEGDSAGGSAKQ R+R+ QAVLPLRGKILN
Sbjct: 292 TRKGALDIASLPGKLADCQERDPTKCELLLVEGDSAGGSAKQGRDRTFQAVLPLRGKILN 351

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVII 540
           V    ++++ ++ +I  L+ ALG         R  +  + LRY ++II
Sbjct: 352 VERVRADRMLSSAEIGTLITALGAGIGRSSTDREGFNPDKLRYHRIII 399


>gi|51571599|emb|CAH18966.1| gyrase B [Corallococcus coralloides]
          Length = 380

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 128/383 (33%), Positives = 202/383 (52%), Gaps = 16/383 (4%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG++ VN LS+   V + R   ++ Q ++RG+     ++     +KRGT I 
Sbjct: 1   KVSGGLHGVGVTCVNFLSEWFKVRIQRAGKVYEQSYARGVANGAPQEVG-TTDKRGTMIH 59

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F+PD ++      F+   L +  +  A+L+  +      ++   E         F F GG
Sbjct: 60  FKPDTQVMETV-DFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD-------FKFEGG 111

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           + ++++   + +  +  +    K+E++G    ++E A+ W +     I ++ N I T EG
Sbjct: 112 ISSFVEYLNKAKEALHDKPVYIKSEREGV---SLEIAMQWNDGYDERIFTFANNINTHEG 168

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKT 385
           G+H SG + ALTR +  YAE     + +      +D       ++SV +  P+F GQTKT
Sbjct: 169 GSHLSGFKAALTRTLNSYAEKGSLWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQTKT 228

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAI 444
           KL + + +  VE  + D    +L +NP  A K++  +          R+ +  V RK  +
Sbjct: 229 KLGNSEVKGLVEQMVNDQLASFLEENPPLAKKVVAKIGDACRARLAARKARETVRRKGVL 288

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC     H +EL+IVEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  
Sbjct: 289 DGGGLPGKLADCQSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARF 348

Query: 505 EKIRNNQQIMDLVQALGCRTRSQ 527
           EK+  + +I+ L+ ALG      
Sbjct: 349 EKMLTSAEIVTLITALGTGIYDP 371


>gi|209863321|gb|ACI88760.1| DNA gyrase subunit B [Aeromonas sp. JH108]
          Length = 375

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 139/385 (36%), Positives = 210/385 (54%), Gaps = 16/385 (4%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
            GLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P
Sbjct: 2   AGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWP 60

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
            P IF D   F    L K  +  ++L+  V      +++  E         F + GG+K 
Sbjct: 61  SPTIFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKA 112

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH
Sbjct: 113 FVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTH 169

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLV
Sbjct: 170 LVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLV 229

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447
           S + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+   
Sbjct: 230 SSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIA 289

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+
Sbjct: 290 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 349

Query: 508 RNNQQIMDLVQALGCRTRSQYREED 532
            ++Q++  L+ ALGC          
Sbjct: 350 ISSQEVGTLITALGCGIGRDEYNPR 374


>gi|24021179|gb|AAN40980.1| DNA gyrase subunit beta [Aeromonas veronii]
 gi|56675140|emb|CAI34872.1| DNA gyrase subunit B [Aeromonas sp. F544A]
 gi|83683058|emb|CAJ47373.1| DNA gyrase subunit B [Aeromonas encheleia]
          Length = 372

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 137/382 (35%), Positives = 210/382 (54%), Gaps = 15/382 (3%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++     +  GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPT 60

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   +    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 61  IFTDTL-YHYEILAKRLRELSFLNSGVSIRLEDERDGRE-------MHFCYEGGIKAFVE 112

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 113 YLNQNKTPIHPKVFHFSTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 169

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 170 FRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 229

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 230 VKTAVEQAMGEKLGEFLLENPSDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 289

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 290 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 349

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 350 QEVGTLITALGCGIGRDEYNPD 371


>gi|56675142|emb|CAI34873.1| DNA gyrase subunit B [Aeromonas encheleia]
          Length = 372

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 136/382 (35%), Positives = 210/382 (54%), Gaps = 15/382 (3%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++     +  GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPT 60

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   +    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 61  IFTDTL-YHYEILAKRLRELSFLNSGVSIRLEDERDGRE-------MHFCYEGGIKAFVE 112

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 113 YLNQNKTPIHPKVFHFSTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 169

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   +D+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 170 FRTALTRTLNTYMDKEDYSKKAKSAASGEDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 229

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 230 VKTAVEQAMGEKLGEFLLENPSDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 289

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 290 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 349

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 350 QEVGTLITALGCGIGRDEYNPD 371


>gi|29652960|gb|AAO87449.1| DNA gyrase B [Listeria monocytogenes]
          Length = 187

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 80/188 (42%), Positives = 113/188 (60%), Gaps = 2/188 (1%)

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +R +    + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+L
Sbjct: 2   AKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAIL 61

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           P+RGKILNV  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAH
Sbjct: 62  PIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAH 121

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           I +LLLT FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  
Sbjct: 122 IRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDT 179

Query: 611 KIEISRFK 618
           K  I R+K
Sbjct: 180 KYSIQRYK 187


>gi|29653004|gb|AAO87471.1| DNA gyrase B [Listeria monocytogenes]
          Length = 189

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 80/188 (42%), Positives = 113/188 (60%), Gaps = 2/188 (1%)

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +R +    + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+L
Sbjct: 4   AKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAIL 63

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           P+RGKILNV  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAH
Sbjct: 64  PIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAH 123

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           I +LLLT FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  
Sbjct: 124 IRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDT 181

Query: 611 KIEISRFK 618
           K  I R+K
Sbjct: 182 KYSIQRYK 189


>gi|68159573|gb|AAY86368.1| gyrase B [Clostridium asparagiforme DSM 15981]
          Length = 397

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 133/408 (32%), Positives = 195/408 (47%), Gaps = 23/408 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKV 199
           N  Y+ SGGLHGVG SVVNALS  + V V R   I+   + +G+P+ PLE        K 
Sbjct: 1   NEAYKTSGGLHGVGSSVVNALSSHMDVKVYRDGCIYHDAYEKGLPVIPLENGLLPVIGKT 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
           R   GT+I F PD +IF     F A  L       AYL+  +   ++  +         E
Sbjct: 61  RE-TGTQINFLPDDEIFERTR-FKADWLKSRLHETAYLNPNLMIFYANKRSG-----ESE 113

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSY 318
           +  ++ P G+ +Y++     ++ +   I+     K    +  VE A+ + +   E    +
Sbjct: 114 QITYHEPEGIVSYVKELYTGKTAVHDPIYF----KGTVDKVEVEVALQFVDTFEENILGF 169

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
           CN I T EGGTH +G +   T  I  YA       ++  +    D       +++V   +
Sbjct: 170 CNNIFTQEGGTHLAGFKTKFTAMINSYARELGILKEKDANFTGADTRNGMTAVVAVKHPD 229

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P F GQTKTKL S DA + V   + D    Y  +N      ++    + ++ R    K +
Sbjct: 230 PIFEGQTKTKLASADATKAVFAVVGDELQRYFDRNLEVLKGVIGCAEKSAKIRRAEEKAK 289

Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
                 +       GKLA+C    A   E+FIVEGDSAGGSAK ARNR  QA+LP+RGKI
Sbjct: 290 TNMLTRSKFSFDSNGKLANCESRDAEKCEIFIVEGDSAGGSAKTARNRMYQAILPIRGKI 349

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGC----RTRSQYREEDLRYEKVII 540
           LNV  A  +K+  N +I  ++ A GC       + +    LRY K+I+
Sbjct: 350 LNVEKASMDKVLANAEIKTMINAFGCGFSEGYGNDFDITKLRYNKIIL 397


>gi|308153172|dbj|BAJ22175.1| DNA gyrase subunit B [Pseudonocardia hydrocarbonoxydans]
          Length = 405

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 126/411 (30%), Positives = 208/411 (50%), Gaps = 21/411 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVG+SVVNALS  L   +     ++ Q ++R IP    +   +   + G
Sbjct: 1   SDSYAVSGGLHGVGVSVVNALSVALDAEIHTDGFVWRQHYARSIPGPLRK--GEATTRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE--- 261
           + IT+  DP IF     ++   + +  Q  A+L+  +      ++     +   E +   
Sbjct: 59  SSITYWADPDIFETTT-YNLETIRRRLQEMAFLNKGLTMVLRDERNGEANHDAEEPDAEG 117

Query: 262 --------EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
                    + +P GL+ ++    +++  I  ++ +   E  G     +E A+ W     
Sbjct: 118 YVAKTVENVYCYPNGLEDFVAHLNKSKDPIHKKLVSFSGEADGH---ALEVAMQWNSGYT 174

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
             + ++ NTI T EGGTHE G R ALT  + +YA   +    +  ++  DD+      I+
Sbjct: 175 ESVYTFANTINTHEGGTHEEGFRSALTSTVNRYARAQKLLKDKDPALSGDDIREGLAAIV 234

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEER 429
           SV ++EP+F GQTKTKL + + +  V+    +    +  +NP EA  ++   V       
Sbjct: 235 SVKVKEPQFEGQTKTKLGNTEVKSFVQRVSNEWLTDWFERNPAEAKIIVNKSVQSAQARA 294

Query: 430 LRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             R+ +  V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+
Sbjct: 295 AARKARELVRRKSATDIGGLPGKLADCRSTDPVRSEVYIVEGDSAGGSAKSGRDSMFQAI 354

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           LP+RGKI+NV  A  +++  N ++  ++ ALG     ++    LRY KV++
Sbjct: 355 LPIRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDLSKLRYHKVVL 405


>gi|46367517|emb|CAG25880.1| DNA gyrase subunit B [Yersinia frederiksenii]
          Length = 346

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 125/357 (35%), Positives = 194/357 (54%), Gaps = 15/357 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS++L + + R+  +  Q +  G+P +PL+   +  ++ GT + F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYRMGVPQAPLKVVGET-DQTGTTVRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F +   F    L K  +  ++L+  V       +   E       + F++ GG+
Sbjct: 60  WPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLRDKRNDKE-------DHFHYEGGI 112

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K +++   +N++ I  ++F   T K       VE A+ W +     I  + N I   +GG
Sbjct: 113 KAFVEYLNKNKNPIHPKVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGG 169

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH  G R A+TR +  Y +      K  IS   DD     + ++SV + +P+F+ QTK K
Sbjct: 170 THLVGFRTAMTRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDK 229

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIR 445
           LVS + +  VE  + +    YL++NP +A  ++  +I+        R+ +    RK A+ 
Sbjct: 230 LVSSEVKTAVETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALD 289

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
              LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 LAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 346


>gi|62085678|gb|AAX63231.1| DNA gyrase subunit B [Gordonia amicalis]
          Length = 424

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 135/429 (31%), Positives = 207/429 (48%), Gaps = 39/429 (9%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD+  Y +SGGLHGVGISVVNALS ++ + +A     + Q +S   P    +      
Sbjct: 1   GKFDSDAYAVSGGLHGVGISVVNALSTKVELEIANDGFNWEQTYSYAKPGPLEK--GDAT 58

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP-- 258
            K GT + F PDP+IF +   F+A  + +  Q  A+L+  +    +  +  A +      
Sbjct: 59  RKTGTTVRFWPDPEIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEAPGDAN 118

Query: 259 ----------------------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
                                       +   +++P GL  Y++     +  I + +   
Sbjct: 119 GDDEAAPTTEVAETVKTETEKAAAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHTTVIGF 178

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             + +G     VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   
Sbjct: 179 NAKGEGH---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEK 235

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
           +   ++   +  DD+      ++SV + +P+F GQTKTKL + + +  V+    +   H+
Sbjct: 236 KLIKEKDGKLTGDDIREGLAAVISVKVADPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHW 295

Query: 408 LVQNPIEATKLLEWVIER-SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
              NP EA  +++   +        RR +  V RKTA     LPGKLADC  N     E+
Sbjct: 296 FEANPAEAKIIIKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEV 355

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS 526
           +IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     
Sbjct: 356 YIVEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHD 415

Query: 527 QYREEDLRY 535
           ++    LRY
Sbjct: 416 EFDISKLRY 424


>gi|309253412|gb|ADO60721.1| gyrase subunit B [Micromonospora chaiyaphumensis]
          Length = 373

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 115/377 (30%), Positives = 194/377 (51%), Gaps = 9/377 (2%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS ++ V + +   ++ Q++    P    +   +  ++ G+ ++F PD
Sbjct: 3   GLHGVGVSVVNALSTKMAVEIHKDGFVWRQEYHNSKPTPLEK--GEPTDRTGSAVSFWPD 60

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
             +F     FD   + +  Q  A+L+  +      ++    + G P +  F++ GG+  +
Sbjct: 61  ADVFETV-DFDFQTIYRRLQEMAFLTRGLTIHLLDERVAETEEGKPREVTFHYEGGIADF 119

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++    +++ I   +     E++G    +VE A+ W E     + ++ N I T EGGTHE
Sbjct: 120 VRHLNASKNPIHKTVVEFGAEEEG---MSVEIAMQWNESYGESVYTFANNINTHEGGTHE 176

Query: 332 SGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
            G R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQTKTKL + 
Sbjct: 177 EGFRAALTSVVNRYGAEKKLLKGDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNT 236

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRKTAIRKLRL 449
             +  V+    D    +  +NP EA  +++            ++ ++   RK+ +    +
Sbjct: 237 PVKSFVQRVCNDRLVDWFDRNPAEAKTIIQKASQAARARIAAQQARKLARRKSLLESGSM 296

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  
Sbjct: 297 PGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLK 356

Query: 510 NQQIMDLVQALGCRTRS 526
           N ++  L+ ALG     
Sbjct: 357 NNEVQALITALGTGIHD 373


>gi|86651921|gb|ABD14448.1| DNA gyrase beta subunit [Photobacterium leiognathi]
          Length = 379

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 136/389 (34%), Positives = 215/389 (55%), Gaps = 15/389 (3%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+++ +T+ R   I  Q +  G+P +PL       ++ GTRI F P  + F +
Sbjct: 1   VSVVNALSEKVELTIKRGGHIHQQVYRHGVPDAPLAVIGDT-DETGTRIRFWPSEETFTN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V    + ++E        + + F + GG++ +++    
Sbjct: 60  I-EFQYEILAKRLRELSFLNSGVSIKLNDERE------EGKHDHFMYEGGIQAFVEHLNR 112

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ I  ++F   +E+      +VE A+ W +     I  + N I   +GGTH +G R A
Sbjct: 113 NKTPIHPKVFHFDSERDD--GISVEVAMQWNDGFQESIFCFTNNIPQRDGGTHLAGFRGA 170

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  
Sbjct: 171 LTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAA 230

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454
           VE+A+ +    +L++NP +A  +   +I+ S  R   RK R    RK A+    LPGKLA
Sbjct: 231 VESAMNEKLAEFLLENPADAKTVCTKIIDASRAREAARKAREMTRRKGALDLAGLPGKLA 290

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++ 
Sbjct: 291 DCQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 350

Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMT 542
            L+ A+GC   R +Y  + LRY  +IIMT
Sbjct: 351 TLITAMGCGIGRDEYNPDKLRYHNIIIMT 379


>gi|212659872|gb|ACJ37001.1| DNA gyrase subunit B [Xylella fastidiosa]
 gi|212659881|gb|ACJ37005.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 267

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 91/278 (32%), Positives = 149/278 (53%), Gaps = 13/278 (4%)

Query: 94  ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           A+ I V +  +G ++V DNGRGIPV+ H K    S  E+ILT LHAGGKFD+++Y++SGG
Sbjct: 2   ADSILVKIHIDGSVSVSDNGRGIPVDIH-KEEGVSAAEVILTVLHAGGKFDDNSYKVSGG 60

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS+ L + + R    + Q++  G P  PL++  +V  KRGT + F+P  
Sbjct: 61  LHGVGVSVVNALSERLWLDIWRDGYHYQQEYVLGEPQYPLKQL-EVSAKRGTTLRFKPAK 119

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IF D   F    L K  +  ++L+  +K     ++          +++F++ GG+++++
Sbjct: 120 EIFSD-VEFHYENLAKRLRELSFLNSGLKVSLIDERG------EGRRDDFHYEGGIRSFV 172

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   + ++ +   + +   E  G     V+ A+ W +     +  + N I   +GGTH +
Sbjct: 173 EHLAQLKTPLHPNVISVTGEHNGI---VVDAALQWTDAYQETMYCFTNNIPQKDGGTHLA 229

Query: 333 GLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
           G R ALTR +  Y E     R   I      +    I 
Sbjct: 230 GFRAALTRTLGNYIEQNGVARQAKITFSGDDMREGMIA 267


>gi|12644441|sp|Q44081|GYRB_ACIJO RecName: Full=DNA gyrase subunit B
 gi|4514421|dbj|BAA75409.1| DNA gyrase subunit B [Acinetobacter johnsonii]
          Length = 389

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 141/401 (35%), Positives = 216/401 (53%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L +T+ R   I  Q++  G P+ PL           
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSRKLELTIHRAGHIHQQEYKHGDPVYPLTVVGDTDTTGT 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
             + F P  + F     F+   L +  +  ++L+  V+     ++  AE         F 
Sbjct: 61  -TVRFWPSAETFSQTI-FNVDILARRLRELSFLNAGVRIVLRDERIHAE-------HVFD 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   + ++ ++         + G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLSEFVKYINQGKTHLNDIFHFTVQAENGI---GVEVALQWNDTYQENVRCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  +++  DD       I+SV + +P+F+ 
Sbjct: 169 QKDGGTHLAGFRAALTRGLNSYMENENLLKKEKVAVSGDDAREGLTAIVSVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNR 440
           QTK KLVS + +  VE A+   F  YL++NP  A  +   +I+ +  R   RK      R
Sbjct: 229 QTKEKLVSSEVKPAVEQAMNKSFSEYLLENPQAAKSIAGKIIDAARARDAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV 
Sbjct: 289 KSALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY K+II
Sbjct: 349 RARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIII 389


>gi|294963322|gb|ADF50148.1| DNA gyrase subunit B [Bacillus pumilus]
          Length = 365

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 134/371 (36%), Positives = 201/371 (54%), Gaps = 13/371 (3%)

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  L VTV R   I  Q+F RG+P+  L+   +  +  GT   F PDP+IF +   
Sbjct: 1   VNALSTTLDVTVYRDGKIHHQQFKRGVPVGDLKIIGET-DVTGTTTHFVPDPEIFTETIE 59

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L    +  A+L+  V       +E  E+        + + GG+K+Y++    ++ 
Sbjct: 60  FDYDTLANRVRELAFLTKGVNIIIEDLREGKERRNE-----YCYEGGIKSYVEHLNRSKE 114

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
           ++  E    + EK G    TVE A+ + +     I S+ N I T EGGTHE+G +  LTR
Sbjct: 115 VVHEEPVYIEGEKDGI---TVEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGLTR 171

Query: 341 GIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  YA      +    ++  +D+      I+S+    P+F GQTKTKL + +A+   ++
Sbjct: 172 VINDYARKNGVFKDGDSNLSGEDVREGLTAIISIKHPNPQFEGQTKTKLGNSEARTITDS 231

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
              +  + +L++NP  A K++E  +  +  R+  +K RE   RK+A+    LPGKLADCS
Sbjct: 232 LFSEALEKFLLENPDSAKKIVEKGLMAARARMAAKKARELTRRKSALEVSSLPGKLADCS 291

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  ++
Sbjct: 292 SKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMI 351

Query: 518 QALGCRTRSQY 528
            ALG      +
Sbjct: 352 TALGTGIGEDF 362


>gi|3021636|dbj|BAA25338.1| DNA gyrase B subunit [Pseudomonas putida]
          Length = 381

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 141/393 (35%), Positives = 210/393 (53%), Gaps = 17/393 (4%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P  P++         GT+I F+ 
Sbjct: 1   GGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQEPMKIVGD-SETTGTQIHFKA 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SSETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++         + G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTPVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+
Sbjct: 289 GLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKM 348

Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 349 ISSQEVGTLITALGCGIGREEYNIDKLRYHNII 381


>gi|46367523|emb|CAG25883.1| DNA gyrase subunit B [Yersinia frederiksenii ATCC 33641]
          Length = 346

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 125/357 (35%), Positives = 194/357 (54%), Gaps = 15/357 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS++L + + R+  +  Q +  G+P +PL+   +  ++ GT + F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYRMGVPQAPLKVVGET-DQTGTTVRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F +   F    L K  +  ++L+  V       +   E       + F++ GG+
Sbjct: 60  WPSFQTFTNNIEFQYEILAKRLRELSFLNSGVSIKLRDKRNDKE-------DHFHYEGGI 112

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K +++   +N++ I  ++F   T K       VE A+ W +     I  + N I   +GG
Sbjct: 113 KAFVEYLNKNKNPIHPKVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGG 169

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH  G R A+TR +  Y +      K  IS   DD     + ++SV + +P+F+ QTK K
Sbjct: 170 THLVGFRTAMTRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDK 229

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIR 445
           LVS + +  VE  + +    YL++NP +A  ++  +I+        R+ +    RK A+ 
Sbjct: 230 LVSSEVKTAVETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALD 289

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
              LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 LGGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 346


>gi|88824767|gb|ABD52429.1| gyrase B [Helicobacter pylori]
          Length = 391

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 146/401 (36%), Positives = 223/401 (55%), Gaps = 13/401 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NK 202
           N TY+ SGGLHGVG+SVVNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +   +
Sbjct: 1   NDTYKXSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKE 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT I F PD  +      F A  L K  +  AYL+  +K  +  +K          +E 
Sbjct: 61  SGTTIEFFPDESVMEVV-EFQAGILQKRFKEMAYLNDGLKISFKXEK-------TQLQET 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
           +++  GLK +++   + + L++  I     +++      V  A A  + N    S+ N I
Sbjct: 113 YFYEDGLKQFVKDSAK-KELLTPIIAFKSMDEETRTSIEVALAYAD-DYNENTLSFVNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T EGGTHE+G ++ L++ I +Y +     +    IS+D+    + ++S+ + EP F GQ
Sbjct: 171 KTSEGGTHEAGFKMGLSKAILQYIDNNIKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TK+KL S  A+  V   + D    +L +NP EA  +    +  ++ R   +K RE   +K
Sbjct: 231 TKSKLGSSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKK 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC       +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  
Sbjct: 291 DNLSVGTLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           +   KI  +++I +++ A GC  +  +  E LRY K+IIMT
Sbjct: 351 SHLSKILKSEEIKNMITAFGCGIQESFDIERLRYHKIIIMT 391


>gi|56675124|emb|CAI34864.1| DNA gyrase subunit B [Aeromonas sp. V130]
 gi|56675126|emb|CAI34865.1| DNA gyrase subunit B [Aeromonas sp. F553E]
 gi|56675128|emb|CAI34866.1| DNA gyrase subunit B [Aeromonas sp. V23]
 gi|56675130|emb|CAI34867.1| DNA gyrase subunit B [Aeromonas sp. V183]
          Length = 372

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 137/382 (35%), Positives = 211/382 (55%), Gaps = 15/382 (3%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P++PL++     +  GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPVAPLKQIGDSSSGTGTEVRFWPSPT 60

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   +    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 61  IFTDTL-YHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVE 112

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 113 YLNQNKTPIHPKVFHFSTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 169

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 170 FRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 229

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 230 VKTAVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 289

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 290 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 349

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 350 QEVGTLITALGCGIGRDEYNPD 371


>gi|209863347|gb|ACI88773.1| DNA gyrase subunit B [Aeromonas sp. JH79]
          Length = 371

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 137/380 (36%), Positives = 211/380 (55%), Gaps = 15/380 (3%)

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALSD+L +T+ R   ++ Q +  G P++PL++     +  GT + F P P
Sbjct: 3   LHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPVAPLKQIGDSSSGTGTEVRFWPSP 62

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF D   +    L K  +  ++L+  V      +++  E         F + GG+K ++
Sbjct: 63  TIFTDTL-YHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFV 114

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  
Sbjct: 115 EYLNQNKTPIHPKVFHFSTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLV 171

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS 
Sbjct: 172 GFRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSS 231

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    L
Sbjct: 232 EVKTAVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGL 291

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ +
Sbjct: 292 PGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMIS 351

Query: 510 NQQIMDLVQALGCRTRSQYR 529
           +Q++  L+ ALGC       
Sbjct: 352 SQEVGTLITALGCGIGRDEY 371


>gi|46367515|emb|CAG25879.1| DNA gyrase subunit B [Yersinia bercovieri]
          Length = 346

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 125/357 (35%), Positives = 193/357 (54%), Gaps = 15/357 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS++L + + R+  +  Q +  G+P +PL+   +  +  GT + F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DLTGTTVRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F +   F    L K  +  ++L+  V       +   E       + F++ GG+
Sbjct: 60  WPSFETFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDKRNDRE-------DHFHYEGGI 112

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K +++   +N++ I  ++F   T K       VE A+ W +     I  + N I   +GG
Sbjct: 113 KAFVEYLSKNKNPIHPKVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGG 169

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH  G R A+TR +  Y +      K  IS   DD     + ++SV + +P+F+ QTK K
Sbjct: 170 THLVGFRTAMTRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDK 229

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIR 445
           LVS + +  VE  + +    YL++NP +A  ++  +I+        R+ +    RK A+ 
Sbjct: 230 LVSSEVKTAVETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALD 289

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
              LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 LAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 346


>gi|297515931|gb|ADI44316.1| gyrase B [Verrucosispora sp. FXJ6.263]
          Length = 372

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 117/378 (30%), Positives = 196/378 (51%), Gaps = 9/378 (2%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS  + V + +   ++ Q++    P +  +   +  ++ G+ ++F 
Sbjct: 1   SGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQQYDHSKPSTLEK--GEPTDRTGSAVSFW 58

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PDP +F     FD   + +  Q  A+L+  +      ++    + G   +  F + GG+ 
Sbjct: 59  PDPDVFETT-DFDFQTIYRRLQEMAFLTRGLTIHLLDERVAEGEDGKVREVTFKYDGGIA 117

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++    ++S +   +     E++G    ++E A+ W E     + ++ N I T EGGT
Sbjct: 118 DFVRHLNASKSPMHKTVIEFGAEEEG---MSLEIAMQWNESYGESVYTFANNINTHEGGT 174

Query: 330 HESGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           HE G R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQTKTKL 
Sbjct: 175 HEEGFRAALTSVVNRYGADKKLLKGDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLG 234

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKL 447
           +   +  V+    D    +L +NP EA  ++ +           ++ ++   RK+ +   
Sbjct: 235 NTPVKSFVQRVCNDRLVDWLDRNPAEAKIIITKASQAARARIAAQQARKLARRKSLLESG 294

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++
Sbjct: 295 SMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRV 354

Query: 508 RNNQQIMDLVQALGCRTR 525
             N ++  L+ ALG    
Sbjct: 355 LKNNEVQALITALGTGIH 372


>gi|209863349|gb|ACI88774.1| DNA gyrase subunit B [Aeromonas sp. JH92]
 gi|209863351|gb|ACI88775.1| DNA gyrase subunit B [Aeromonas sp. JH85]
 gi|209863353|gb|ACI88776.1| DNA gyrase subunit B [Aeromonas sp. JH86]
          Length = 372

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 137/380 (36%), Positives = 211/380 (55%), Gaps = 15/380 (3%)

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALSD+L +T+ R   ++ Q +  G P++PL++     +  GT + F P P
Sbjct: 4   LHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPVAPLKQIGDSSSGTGTEVRFWPSP 63

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF D   +    L K  +  ++L+  V      +++  E         F + GG+K ++
Sbjct: 64  TIFTDTL-YHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFV 115

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  
Sbjct: 116 EYLNQNKTPIHPKVFHFSTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLV 172

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS 
Sbjct: 173 GFRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSS 232

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    L
Sbjct: 233 EVKTAVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGL 292

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ +
Sbjct: 293 PGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMIS 352

Query: 510 NQQIMDLVQALGCRTRSQYR 529
           +Q++  L+ ALGC       
Sbjct: 353 SQEVGTLITALGCGIGRDEY 372


>gi|19909535|dbj|BAB86963.1| DNA gyrase subunit B [Caulobacter vibrioides]
          Length = 402

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 142/411 (34%), Positives = 219/411 (53%), Gaps = 24/411 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV----- 199
            ++Y++SGGLHGVG+SVVNALSD L + + R   +   +F RG  ++ L+          
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSDWLELLIHRNGKVHQMRFERGDAVTSLKVTGDSPVRTE 60

Query: 200 -----RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
                    GT +TF P    F     FD   L    +  A+L+  V   +   +++   
Sbjct: 61  GPKAGETLTGTEVTFFPSKDTFA-FIEFDRKTLEHRLRELAFLNSGVTIWFKDHRDV--- 116

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313
              P +E+ ++ GG++ +++   + ++ +       K  K       ++ A+ W +    
Sbjct: 117 --EPWEEKLFYEGGIEAFVRHLDKAKTPLLKAPIAVKGVKDKV---EIDLALWWNDSYHE 171

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
           ++  + N I   +GGTH S  R ALTR I  YAE +    K  +S+  +D       +LS
Sbjct: 172 QMLCFTNNIPQRDGGTHLSAFRAALTRIITSYAESSGILKKEKVSLGGEDSREGLTCVLS 231

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V + +P+F+ QTK KLVS + +  VE  + +    +  ++P EA  ++  + E +  R  
Sbjct: 232 VKVPDPKFSSQTKDKLVSSEVRPAVEGLVSEGLSTWFEEHPNEAKAIVTKIAEAAAAREA 291

Query: 432 RRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            RK RE   RK+A+    LPGKLADCS+     +E+FIVEGDSAGGSAKQARNR NQAVL
Sbjct: 292 ARKARELTRRKSALDITSLPGKLADCSERDPAKSEIFIVEGDSAGGSAKQARNRDNQAVL 351

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
           PLRGKILNV  A  +K+ ++ QI  L+ ALG    R  +  + +RY K+++
Sbjct: 352 PLRGKILNVERARFDKMLSSDQIGTLITALGAGIGRDDFNPDKVRYHKIVL 402


>gi|197295747|gb|ACH58586.1| gyrase subunit B [Methylobacterium fujisawaense]
          Length = 388

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 140/397 (35%), Positives = 210/397 (52%), Gaps = 21/397 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS  L + + R +   + +F  G  ++PLE       +RGT ++F P
Sbjct: 1   GGLHGVGVSVVNALSSWLRLRIWRNDKEHAMEFRHGDAVAPLEVVGPGNGRRGTEVSFLP 60

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F     FD   L K  +  A+L+  V+   +  +   +K      EE Y+ GG++ 
Sbjct: 61  STETFT-MIEFDYGTLEKRLRELAFLNSGVRIVLTDARHAEKKR-----EELYYEGGIEA 114

Query: 272 YLQTKLENRSLIS--SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           +++    +R  I   +      +E+ G     VE A  W +     +  + N I   +GG
Sbjct: 115 FVRYLDRSRKPIDGMTSPVVVSSERDGI---RVEVAFWWNDSFNETVLPFTNNIPQRDGG 171

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  YAE +    K  +S+  +D       ++SV + +P+F+ QTK K
Sbjct: 172 THMAGFRAALTRQVTGYAESSGIAKKEKVSLTGEDCREGLTAVISVQVPDPKFSSQTKDK 231

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIR 445
           LVS + +  VEN L +    +L +NP +A  ++  V+  +  R   RK RE   RK A+ 
Sbjct: 232 LVSSEVRPAVENVLNEGLSTWLEENPSQARSVMAKVVLAASAREAARKARETVTRKGALD 291

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC +      E+ +VEGDSAGGSAKQ R+R+ QAVLPLRGKILNV    ++
Sbjct: 292 IASLPGKLADCQERDPTKCEILLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERVRAD 351

Query: 506 KIRNNQQIMDLVQALGCRT------RSQYREEDLRYE 536
           ++ ++ +I  L+ ALG         R  +  E LRY 
Sbjct: 352 RMLSSAEIGTLITALGAGIGRSSTDREGFNPEKLRYH 388


>gi|156071396|dbj|BAF75805.1| DNA gyrase subunit B [Bradyrhizobium yuanmingense]
          Length = 277

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 96/266 (36%), Positives = 144/266 (54%), Gaps = 11/266 (4%)

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           +EV L+ +  +TV D+GRGIPV+ H K    S  E+I+T LHAGGKFD ++Y++SGGLHG
Sbjct: 21  VEVILNADNSVTVRDDGRGIPVDIH-KGEGISAAEVIMTQLHAGGKFDQNSYKVSGGLHG 79

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+SVVNALS +L + + R N     +F+ G  ++PL+       KRGT +TF    + F
Sbjct: 80  VGVSVVNALSSKLGLRIWRDNKEHYIEFAHGDAVAPLKVVGDAPGKRGTEVTFLASTETF 139

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   +D A L    +  A+L+  V    S  +   EK      EE ++ GG++ +++  
Sbjct: 140 KN-IEYDFATLEHRLRELAFLNSGVNIVLSDMRHAVEKR-----EEMFYSGGVEEFVKYL 193

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335
             N+  +       ++E  G     VE A+ W +   E    + N I   +GGTH +G R
Sbjct: 194 DRNKKALVPAPIMVRSEANGI---GVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFR 250

Query: 336 VALTRGIKKYAELTQNKRAISIISDD 361
            ALTR +  YAE    K  I++  DD
Sbjct: 251 GALTRQVNGYAEANAKKEKIALTGDD 276


>gi|23451159|gb|AAN32685.1| DNA gyrase subunit B [Aeromonas bestiarum]
          Length = 372

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 137/382 (35%), Positives = 210/382 (54%), Gaps = 15/382 (3%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++     +  GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPT 60

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   +    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 61  IFTDTL-YHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVE 112

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 113 YLNQNKTPIHPKVFHFSTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 169

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 170 FRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 229

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 230 VKTXVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 289

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 290 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 349

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 350 QEVGTLITALGCGIGRDEYNPD 371


>gi|209863323|gb|ACI88761.1| DNA gyrase subunit B [Aeromonas sp. JH119]
          Length = 371

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 139/382 (36%), Positives = 210/382 (54%), Gaps = 16/382 (4%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
            GLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P
Sbjct: 2   AGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWP 60

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
            P IF D   F    L K  +  ++L+  V      +++  E         F + GG+K 
Sbjct: 61  SPTIFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKA 112

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH
Sbjct: 113 FVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTH 169

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLV
Sbjct: 170 LVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLV 229

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447
           S + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+   
Sbjct: 230 SSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIA 289

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+
Sbjct: 290 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 349

Query: 508 RNNQQIMDLVQALGCRTRSQYR 529
            ++Q++  L+ ALGC       
Sbjct: 350 ISSQEVGTLITALGCGIGRDEY 371


>gi|148616476|gb|ABQ96981.1| GyrB [Nocardiopsis trehalosi]
          Length = 387

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 125/393 (31%), Positives = 197/393 (50%), Gaps = 10/393 (2%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
            +Y +SGGLHGVG+SVVNALS  L V V     ++ Q +    P + L K  +   + GT
Sbjct: 1   KSYAVSGGLHGVGLSVVNALSTALDVEVRTDGHVWRQSYELTRPTADLAK-GEPTGETGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            ITF  DP IF     +    L +  Q  A+L+  +      ++        P    +++
Sbjct: 60  IITFWADPTIFETTT-YSFETLARRMQEMAFLNKGLSITIRDERPQFVDD-SPVVHTYHY 117

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
             GL  +++   +++    + I + + E  G      E A+ W       + ++ NTI T
Sbjct: 118 DEGLSDFVRYLNKSKDPAHATIVSFEEEGDGI---AAEMALQWNHSYTSSVHTFANTINT 174

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTHE G R ALT  + +YA   +   ++  ++  DD+      I+SV + +P+F GQ
Sbjct: 175 TDGGTHEEGFRAALTSIVNRYAREQKLLREKDDNLTGDDIREGLTAIISVKLSDPQFEGQ 234

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRK 441
           TKTKL + +A+  V+    +    +  +NP EA  ++ +           R+ +    RK
Sbjct: 235 TKTKLGNTEAKSFVQRVTNEHLRDWFERNPGEAKDIVTKASQAARARIAARQARDLTRRK 294

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           T +    LPGKLADC        E++IVEGDSAGGSAK  R+   QA+LP+RGKILNV  
Sbjct: 295 TLLESTSLPGKLADCQSTEPERCEVYIVEGDSAGGSAKGGRDPHYQAILPIRGKILNVEK 354

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
           +  ++I  N ++  ++ ALG     ++    LR
Sbjct: 355 SRIDRILRNNEVQAIITALGTGIHDEFDLAKLR 387


>gi|3021644|dbj|BAA25342.1| DNA gyrase B subunit [Pseudomonas fluorescens]
          Length = 381

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 142/393 (36%), Positives = 211/393 (53%), Gaps = 17/393 (4%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +     GT+I FRP
Sbjct: 1   GGLHGVGVSVVNALSELLVLTVRRSGKIWEQTYVHGVPQEPMKVVGE-SETTGTQIHFRP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SDETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++         + G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTPVNQVFHFNVQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+
Sbjct: 289 GLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKM 348

Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 349 ISSQEVGTLITALGCGIGRDEYNIDKLRYHNII 381


>gi|311788332|gb|ADQ12753.1| GyrB [Micromonospora narathiwatensis]
          Length = 371

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 116/375 (30%), Positives = 196/375 (52%), Gaps = 9/375 (2%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS ++ V + +   ++ Q++ +  P    +   +  ++ G+ ++F 
Sbjct: 1   SGGLHGVGVSVVNALSTKMAVEIHKDGFVWRQQYHQSKPTPLEK--GEPTDRTGSAVSFW 58

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PDP +F     FD   + +  Q  A+L+  +      ++    + G P +  F++ GG+ 
Sbjct: 59  PDPDVFETVV-FDFQTIYRRLQEMAFLTRGLTIHLLDERVEETEEGKPREVTFHYDGGIA 117

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++    +++ I   +     E++G    + E A+ W E     + ++ N I T EGGT
Sbjct: 118 DFVRHLNASKNPIHRTVVEFGAEEEG---MSAEIAMQWNESYGESVYTFANNINTHEGGT 174

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISI-ISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           HE G R ALT  + +Y    +  +       +D+      I+SV +  P+F GQTKTKL 
Sbjct: 175 HEEGFRAALTTVVNRYGAEKKLLKGDERLSGEDIREGLAAIISVKLTNPQFEGQTKTKLG 234

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKL 447
           +   +  V+    +    +  +NP EA  ++ +           ++ ++   RK+ +   
Sbjct: 235 NTPVKSFVQRVCNESLVDWFDRNPAEAKIIITKASQAARARIAAQQARKLARRKSLLESG 294

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++
Sbjct: 295 SMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRV 354

Query: 508 RNNQQIMDLVQALGC 522
             N ++  L+ ALG 
Sbjct: 355 LKNNEVQALITALGT 369


>gi|198042724|gb|ACH81187.1| GyrB [Vibrio sp. UST981101-012]
          Length = 373

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 137/383 (35%), Positives = 209/383 (54%), Gaps = 15/383 (3%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
              I +Q +  G P +PL       +K GT+I F P  + F +   F    L K  +  +
Sbjct: 1   GGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQIRFWPSAETFSNT-EFHYDILAKRLRELS 58

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V      ++E        + + F + GG++ ++     N++ I  +IF   +E++
Sbjct: 59  FLNSGVSIKLVDEREAD------KHDHFMYEGGIQAFVDHLNTNKTPIIEKIFHFNSERE 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
                +VE A+ W +     I  + N I   +GGTH +G R ALTR +  + +      K
Sbjct: 113 D--GISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKK 170

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
              +   DD       ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +L++NP
Sbjct: 171 AKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIENP 230

Query: 413 IEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
            EA  +   +I+ +  R   RK R    RK A+    LPGKLADC +     +EL+IVEG
Sbjct: 231 TEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEG 290

Query: 472 DSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYRE 530
           DSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  
Sbjct: 291 DSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNP 350

Query: 531 EDLRYEKVIIMTDADVDGAHIAS 553
           + LRY  +IIMTDADVDG+HI +
Sbjct: 351 DKLRYHNIIIMTDADVDGSHIRT 373


>gi|145480573|ref|XP_001426309.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124393383|emb|CAK58911.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1196

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 79/346 (22%), Positives = 144/346 (41%), Gaps = 21/346 (6%)

Query: 349 TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
            + K   +I    +       L+  I  P F  QTK  L +   +      + + F   +
Sbjct: 6   KKYKEMKNIKPFQVKSFIKIFLNCQIVNPAFDSQTKETLTTKAQKFGSTFEVSEKFLDEI 65

Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQRE--VNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
           ++     T++++ VI +++ RL ++  ++    ++  +  +       D     A    L
Sbjct: 66  IKK----TEIIDNVILQAKSRLNKQLSKQLSAKKQQRLLGIDKLEDANDAGTKNADLCTL 121

Query: 467 FIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523
            + EGDSA   A        R    V PLRGK+LNV  A  + I  N +I  LV+ +G +
Sbjct: 122 ILTEGDSAKSLAMAGIEIVGRDRFGVFPLRGKLLNVRDASIQMIMKNAEIEQLVKIMGLQ 181

Query: 524 TRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE-QKHLFLISPPLFR 581
               Y     LRY  ++IMTD D DG HI  L++ F  +    L + +  L     P+ +
Sbjct: 182 FNKNYENTKSLRYGSIMIMTDQDHDGHHIKGLIINFIEKFWPSLFKMKGFLKQFVTPIIK 241

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           +T+G +          +K + E   + +   ++  +KGLG    S+ ++   +       
Sbjct: 242 VTKGKEFHSFFSIGEYKKFIAE---NPREDYKVKYYKGLGTSTDSEAQQYFSNLTLHR-- 296

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA-SFIDD-VG 685
           +V    D           +K   TKAD+R  ++ E +   ++D + 
Sbjct: 297 KVFTYSDQTDSDYIDLVFSK---TKADQRKDWLSEYSWKQVEDTLD 339


>gi|27530805|dbj|BAC54050.1| DNA gyrase subunit B [Nocardia sp. MBIC05582]
          Length = 415

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 134/421 (31%), Positives = 215/421 (51%), Gaps = 31/421 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L   V      ++Q + R +P    +   +  ++ G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTTLLAEVDNAGHHWTQTYDRSVPGPLKK--GEPTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------ 258
           T I+F PDP IF     F    + +  Q  A+L+  +    + ++    +          
Sbjct: 59  TSISFWPDPDIFETTV-FKFETVARRLQEMAFLNKGLTIVLTDERASDAERIADETADSE 117

Query: 259 ---------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
                          + + +++PGGL+ Y++   ++++     +     +  G     +E
Sbjct: 118 LAEAPKPEGDSESRIKTKTYHYPGGLEDYVRYINKSKTAQHPSVIGFGAKGTGH---ELE 174

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISD 360
            A+ W +     + ++ NTI T EGGTHE G R ALT  +KKYA+  +   ++   +  D
Sbjct: 175 IAMQWNQTYTESVHTFANTINTHEGGTHEEGFRTALTTVVKKYAKEKKLVKEKDGELSGD 234

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP EA  ++ 
Sbjct: 235 DIREGLAAIISVKVGEPQFEGQTKTKLGNTEVKSFVQKASGEHLTHWFEANPAEAKLIVS 294

Query: 421 WVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
             +   + R   R+ R+ V RK+A     LPGKLADC  N     E++IVEGDSAGGSAK
Sbjct: 295 KAVASMQARTAARRARDLVRRKSATDIGGLPGKLADCRSNDPSKCEIYIVEGDSAGGSAK 354

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
             R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K++
Sbjct: 355 SGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDIAKLRYHKIV 414

Query: 540 I 540
           +
Sbjct: 415 L 415


>gi|218516074|ref|ZP_03512914.1| DNA gyrase subunit B [Rhizobium etli 8C-3]
          Length = 362

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 138/369 (37%), Positives = 202/369 (54%), Gaps = 13/369 (3%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD ++Y++SGGLHGVG+SVVNALS  L + + R   I    F+ G+  +PL+     
Sbjct: 3   GGKFDQNSYKVSGGLHGVGVSVVNALSVWLKLKIRRHGKIHEMSFTHGVADAPLKVTGDA 62

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            +  GT ++F P  + F     FD   L    +  A+L+  V+   S  +    K     
Sbjct: 63  PDATGTEVSFMPSSETF-TMTEFDYGTLEHRLRELAFLNSGVRILLSDKRHSDIK----- 116

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSY 318
           +EE  + GGL+ ++      +  +  +    + EK G    TVE A+ W +   E    +
Sbjct: 117 QEEMRYDGGLEAFVAYLDRAKKPLVDKPVAIRGEKDGI---TVEVAMWWNDSYHENVLCF 173

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +G R ALTR +  YA+ +    K  +++  +D       +LSV + +
Sbjct: 174 TNNIPQRDGGTHMAGFRAALTRQVVSYADNSGITKKEKVTLQGEDCREGLTAVLSVKVPD 233

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F+ QTK KLVS + +  VE+ + +    +  ++P EA  L+  V+E +  R   RK R
Sbjct: 234 PKFSSQTKDKLVSSEVRPVVESLVNEALSTWFEEHPSEAKILVGKVVEAAAAREAARKAR 293

Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E   RK A+    LPGKLADCS+     +E+F+VEGDSAGGSAKQ R+R NQA+LPLRGK
Sbjct: 294 ELTRRKGALDIASLPGKLADCSERDPAKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGK 353

Query: 496 ILNVASAGS 504
           ILNV  A  
Sbjct: 354 ILNVERARF 362


>gi|46367525|emb|CAG25884.1| DNA gyrase subunit B [Yersinia intermedia]
          Length = 346

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 124/357 (34%), Positives = 192/357 (53%), Gaps = 15/357 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS++L + + R   +  Q +  G+P +PL+   +  +  GT + F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYKMGVPQAPLKMVGET-DLTGTTVRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F +   F    L K  +  ++L+  V       +   E       + F++ GG+
Sbjct: 60  WPSFQTFTNNIEFQYEILAKRLRELSFLNSGVSIKLKDKRNDRE-------DHFHYEGGI 112

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           + +++   +N++ I  ++F   T K       VE A+ W +     I  + N I   +GG
Sbjct: 113 RAFVEYLSKNKNPIHPKVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGG 169

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH  G R A+TR +  Y +      K  IS   DD     + ++SV + +P+F+ QTK K
Sbjct: 170 THLVGFRTAMTRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDK 229

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIR 445
           LVS + +  VE  + +    YL++NP +A  ++  +I+        R+ +    RK A+ 
Sbjct: 230 LVSSEVKTAVETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALD 289

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
              LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 LAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 346


>gi|321401428|gb|ADW83176.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
          Length = 357

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 140/361 (38%), Positives = 199/361 (55%), Gaps = 10/361 (2%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA-RQNTIFSQKFSRGIPLSPLEKKE 197
           AGGKFD  +Y++SGGLHGVG+SVVNALS+ L  TV      I+ Q++ +G  L P+++  
Sbjct: 2   AGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGKIYEQEYEKGKALYPVKQIG 61

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +    RGT +TF PDP IF     +    L    +  ++L+  +   ++  +E  +K G 
Sbjct: 62  ETTK-RGTIVTFYPDPSIFTQTIEYSYDTLSARMRELSFLNKGITITFTDKRE-KDKDGN 119

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
              E F+   GLK Y++    NR      I    +         VE A+ +       I 
Sbjct: 120 FVSEIFHSTEGLKEYIRYLDGNRE---PIIAHVISMDNDKGEIPVEVALIYNTSYTENIF 176

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFI 374
           SY N I T EGGTH  G R  LTR +KKYA+ +    K    I  DD       I+SV +
Sbjct: 177 SYVNNINTHEGGTHLQGFRTGLTRSLKKYADSSGMLDKLKFEISGDDFREGLTAIISVKV 236

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP+F GQTKTKL + +    V  A+ D  ++YL +NP +A  +++ VI  ++ R   +K
Sbjct: 237 AEPQFEGQTKTKLGNREVVSPVSQAVGDMIENYLEENPNDARIIVQKVILAAQARHAAKK 296

Query: 435 QREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            RE+  RKT +    LPGKL+DCS+      E+F+VEGDSAGG+AKQ  +R+ QA+LPLR
Sbjct: 297 AREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVFLVEGDSAGGTAKQGPDRAFQAILPLR 356

Query: 494 G 494
           G
Sbjct: 357 G 357


>gi|119226132|dbj|BAF41045.1| DNA gyrase subunit B [Rhodococcus corynebacterioides]
 gi|308153214|dbj|BAJ22196.1| DNA gyrase subunit B [Rhodococcus globerulus]
          Length = 415

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 134/421 (31%), Positives = 215/421 (51%), Gaps = 31/421 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  L   V      ++Q + R +P    +   +  ++ G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTTLLAEVDNAGHHWTQTYDRSVPGPLKK--GEPTDRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA------------ 252
           T I+F PDP IF     F    + +  Q  A+L+  +    + ++               
Sbjct: 59  TSISFWPDPDIFETTV-FKFETVARRLQEMAFLNKGLTIVLTDERASDAERIADETADNE 117

Query: 253 ---------EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
                    +     + + +++PGGL+ Y++   ++++     +     +  G     +E
Sbjct: 118 LAEMPKAEGDADTKVKTKTYHYPGGLEDYVRYINKSKTAQHPSVIGFGAKGTGH---ELE 174

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISD 360
            A+ W +     + ++ NTI T EGGTHE G R ALT  +KKYA+  +   ++   +  D
Sbjct: 175 IAMQWNQTYTESVHTFANTINTHEGGTHEEGFRTALTTVVKKYAKEKKLVKEKDGDLSGD 234

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP EA  ++ 
Sbjct: 235 DIREGLAAIISVKVGEPQFEGQTKTKLGNTEVKSFVQKAAGEHLTHWFEANPAEAKLIVS 294

Query: 421 WVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
             +   + R   R+ R+ V RK+A     LPGKLADC  N     E++IVEGDSAGGSAK
Sbjct: 295 KAVASMQARTAARRARDLVRRKSATDIGGLPGKLADCRSNDPSKCEIYIVEGDSAGGSAK 354

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
             R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K++
Sbjct: 355 SGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDIAKLRYHKIV 414

Query: 540 I 540
           +
Sbjct: 415 L 415


>gi|86211171|gb|ABC71059.2| DNA gyrase subunit beta [Pseudomonas qianpuensis]
          Length = 368

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 138/380 (36%), Positives = 210/380 (55%), Gaps = 16/380 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS+EL +T+ R   ++ Q +  G+P +PLE   +  +  GT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEELVMTIRRGGKVWEQTYHHGVPQAPLEAIGET-DSTGTQ 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F+P  + F     F    L K  +  ++L+  V      ++         ++E F + 
Sbjct: 60  IHFKPSAETFTSIT-FSWDILAKRLRELSFLNSGVGIHLIDER-------TGKRELFRYE 111

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GGL+ +++    N++ I+S          G     VE ++ W +     +  + N I   
Sbjct: 112 GGLRAFVEYLNVNKTTINSVFHFNVQRDDGI---GVEVSMQWNDSFNESLLCFTNNIPQR 168

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R ALTR +  Y +      K  +S   DD       I+SV + +P+F+ QT
Sbjct: 169 DGGTHLAGFRSALTRSLNSYIDQEGLLKKMKVSTSGDDAREGLTAIISVKVPDPKFSSQT 228

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKT 442
           K KLVS + +  VE  +   F  YL++ P EA  ++  +I+ +  R   RK R    RK 
Sbjct: 229 KDKLVSSEVKTAVEQEMNKFFSDYLLEKPNEAKAVVGKMIDAARAREAARKAREMTRRKG 288

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A
Sbjct: 289 ALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKA 348

Query: 503 GSEKIRNNQQIMDLVQALGC 522
             +++ ++Q++  L+ ALGC
Sbjct: 349 RFDRMLSSQEVGTLITALGC 368


>gi|95108295|emb|CAK18169.1| DNA gyrase subunit B [Aeromonas salmonicida subsp. achromogenes]
          Length = 372

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 137/382 (35%), Positives = 210/382 (54%), Gaps = 15/382 (3%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++     +  GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPT 60

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   +    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 61  IFTDTL-YHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVE 112

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 113 YLNQNKTPIHPKVFHFSTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 169

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 170 FRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 229

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 230 VKTAVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 289

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 290 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRRNQAILPLKGKILNVEKARFDKMISS 349

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 350 QEVGTLITALGCGIGRDEYNPD 371


>gi|46367529|emb|CAG25886.1| DNA gyrase subunit B [Yersinia frederiksenii]
 gi|46367531|emb|CAG25887.1| DNA gyrase subunit B [Yersinia frederiksenii]
          Length = 346

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 125/357 (35%), Positives = 194/357 (54%), Gaps = 15/357 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS++L + + R+  +  Q +  G+P +PL+   +  ++ GT + F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYRMGVPQAPLKVVGET-DQTGTTVRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F +   F    L K  +  ++L+  V       +   E       + F++ GG+
Sbjct: 60  WPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDKRNDKE-------DHFHYEGGI 112

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K +++   +N++ I  ++F   T K       VE A+ W +     I  + N I   +GG
Sbjct: 113 KAFVEYLNKNKNPIHPKVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGG 169

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH  G R A+TR +  Y +      K  IS   DD     + ++SV + +P+F+ QTK K
Sbjct: 170 THLVGFRTAMTRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDK 229

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIR 445
           LVS + +  VE  + +    YL++NP +A  ++  +I+        R+ +    RK A+ 
Sbjct: 230 LVSSEVKTAVETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALD 289

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
              LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 LGGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 346


>gi|23451162|gb|AAN32686.1| DNA gyrase subunit B [Aeromonas hydrophila]
 gi|31616507|gb|AAP47819.1| DNA gyrase B [Aeromonas salmonicida subsp. salmonicida]
 gi|56675116|emb|CAI34860.1| DNA gyrase subunit B [Aeromonas bestiarum]
 gi|56675118|emb|CAI34861.1| DNA gyrase subunit B [Aeromonas sp. V1]
 gi|56675120|emb|CAI34862.1| DNA gyrase subunit B [Aeromonas sp. V32]
 gi|56675122|emb|CAI34863.1| DNA gyrase subunit B [Aeromonas sp. V155]
 gi|56675132|emb|CAI34868.1| DNA gyrase subunit B [Aeromonas sp. F530D]
 gi|56675134|emb|CAI34869.1| DNA gyrase subunit B [Aeromonas sp. F666I]
 gi|66474559|gb|AAY46849.1| GyrB [Aeromonas bestiarum]
 gi|95108293|emb|CAK18168.1| DNA gyrase subunit B [Aeromonas salmonicida subsp. masoucida]
          Length = 372

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 137/382 (35%), Positives = 210/382 (54%), Gaps = 15/382 (3%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++     +  GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPT 60

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   +    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 61  IFTDTL-YHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVE 112

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 113 YLNQNKTPIHPKVFHFSTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 169

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 170 FRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 229

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 230 VKTAVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 289

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 290 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 349

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 350 QEVGTLITALGCGIGRDEYNPD 371


>gi|56675144|emb|CAI34874.1| DNA gyrase subunit B [Aeromonas sp. F713E]
 gi|62867460|emb|CAI79641.1| DNA gyrase subunit B [Aeromonas tecta]
 gi|62867462|emb|CAI79642.1| DNA gyrase subunit B [Aeromonas tecta]
 gi|62867464|emb|CAI79643.1| DNA gyrase subunit B [Aeromonas tecta]
 gi|62867466|emb|CAI79644.1| DNA gyrase subunit B [Aeromonas tecta]
 gi|62867468|emb|CAI79645.1| DNA gyrase subunit B [Aeromonas tecta]
          Length = 372

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 137/382 (35%), Positives = 210/382 (54%), Gaps = 15/382 (3%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++     +  GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPT 60

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   +    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 61  IFSDTL-YHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVE 112

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 113 YLNQNKTPIHPKVFHFSTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 169

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 170 FRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 229

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 230 VKTAVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 289

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 290 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 349

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 350 QEVGTLITALGCGIGRDEYNPD 371


>gi|3021646|dbj|BAA25343.1| DNA gyrase B subunit [Pseudomonas fluorescens]
          Length = 381

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 141/393 (35%), Positives = 209/393 (53%), Gaps = 17/393 (4%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P  P++         GT+I F+P
Sbjct: 1   GGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGD-SESTGTQIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
               F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SADTFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++         + G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+
Sbjct: 289 GLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKM 348

Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            ++Q++  L+ ALGC   R +   + LRY  +I
Sbjct: 349 ISSQEVGTLITALGCGIGREENNIDKLRYHNII 381


>gi|307592552|gb|ADN65364.1| DNA gyrase subunit B [Chryseobacterium luteum]
          Length = 239

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 96/240 (40%), Positives = 157/240 (65%), Gaps = 7/240 (2%)

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA- 443
           TKL + +    V+  +R+   +++ +NP EA  ++  V+  ++ R   +K RE+ ++ + 
Sbjct: 1   TKLGNSEVSGAVDKIVREMLTNFIEENPNEAKIIVHKVVLAAKARQAAKKAREMVQRKSP 60

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKL+DCS +    +ELF+VEGDSAGG+AKQ R+R  QA+LPLRGKILNV  + 
Sbjct: 61  MGGSGLPGKLSDCSSSDPAESELFLVEGDSAGGTAKQGRDRHFQAILPLRGKILNVEKSM 120

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTF 558
             K+ +N++I ++  ALG    ++          LRY KV+IMTDAD+DG+HI++L+LTF
Sbjct: 121 LHKVYDNEEIKNIYTALGVSVGTEEDSKALNMAKLRYHKVLIMTDADIDGSHISTLILTF 180

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           F++ M +LIE  ++++  PPL+ + +G K VYA++E+ +++   E    GKG +E+ R+K
Sbjct: 181 FFRFMKELIENGYIYIAQPPLYLLKKGNKKVYAYNEKEREEFTLEMAPDGKG-VEVQRYK 239


>gi|66474547|gb|AAY46843.1| GyrB [Aeromonas bestiarum]
 gi|66474549|gb|AAY46844.1| GyrB [Aeromonas bestiarum]
          Length = 372

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 138/382 (36%), Positives = 211/382 (55%), Gaps = 15/382 (3%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++     +  GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPT 60

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   +    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 61  IFTDTL-YHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVE 112

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 113 YLNQNKTPIHPKVFHFSTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 169

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 170 FRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 229

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 230 VKTAVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 289

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 290 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 349

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC   S     D
Sbjct: 350 QEVGTLITALGCGIGSDEYNPD 371


>gi|323146976|gb|ADX32781.1| DNA gyrase B subunit [endophytic bacterium 10(2011)]
 gi|323146996|gb|ADX32791.1| DNA gyrase B subunit [endophytic bacterium 24(2011)]
          Length = 233

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 84/245 (34%), Positives = 129/245 (52%), Gaps = 27/245 (11%)

Query: 78  FSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIIL 134
             EV+DN++DE +AGY N I+V +  +  +++ DNGRG+P          P +S  EI++
Sbjct: 1   VFEVLDNSIDEALAGYCNDIQVIIHADNSISITDNGRGVPTGLKMDDKHEPKRSAAEIVM 60

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP----- 189
           T LHAGGKFD ++Y++SGGLHGVG+S VNALS  L +TV R       +F RG+P     
Sbjct: 61  TELHAGGKFDQNSYKVSGGLHGVGVSCVNALSAWLRLTVRRDGKKHFMEFHRGVPQNRVI 120

Query: 190 -------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
                  +SP++   +  N RGT + F  D  IFG+   +    L K  +  ++L+  V+
Sbjct: 121 EEIGGIAVSPIQVVGETEN-RGTEVHFMADETIFGN-VEYHYDILAKRIRELSFLNNGVR 178

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
              +  +   E         F F GG+K +++   + +S++   IF    EK G     V
Sbjct: 179 IRLTDQRSGKEDD-------FAFVGGVKGFVEYINKTKSVLHPTIFHVSGEKDGV---GV 228

Query: 303 EWAIA 307
           E A+ 
Sbjct: 229 EVAMQ 233


>gi|124377266|emb|CAM32366.1| DNA gyrase subunit B [Aeromonas sharmana]
          Length = 375

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 140/386 (36%), Positives = 216/386 (55%), Gaps = 16/386 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ RQ  ++ Q +  G P +PL++     ++ GT I F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRQGHVYEQTYFLGEPEAPLKQIGD-SDQTGTEIRFWPSPT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L+K  +  ++L+  V      +++  E       + F++ GG++ +++
Sbjct: 60  IFSDTL-FHYEILVKRLRELSFLNSGVAIHLEDERDNRE-------QHFHYEGGIRAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  + F    E+      TVE A+ W +     +  + N I   +GGTH +G
Sbjct: 112 FLNQNKTPIHPKAFYFAQERDD--GITVEVAMQWNDSYQENVYCFTNNIPQRDGGTHLAG 169

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD       ++SV + +P+F+ QTK KLVS +
Sbjct: 170 FRAALTRTLNNYMDKEGYSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSE 229

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLP 450
            +  VE  + +  D YL++NP +A  ++  +I+ +  R   RK R    RK A+    LP
Sbjct: 230 VKTAVEQCMGEKLDEYLLENPADAKTVVTKIIDAARAREAARKAREMTRRKGALDLAGLP 289

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++
Sbjct: 290 GKLADCQERDPALSELYIVEGDSAGGSAKQGRNRKFQAILPLKGKILNVEKARFDKMLSS 349

Query: 511 QQIMDLVQALGCRT-RSQYREEDLRY 535
           Q++  L+ ALGC   R +Y  + +RY
Sbjct: 350 QEVATLITALGCGIGRDEYDPDKMRY 375


>gi|66474563|gb|AAY46851.1| GyrB [Aeromonas bestiarum]
          Length = 372

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 137/382 (35%), Positives = 210/382 (54%), Gaps = 15/382 (3%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++     +  GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPT 60

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   +    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 61  IFTDTL-YHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVE 112

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 113 YLNQNKTPIHPKVFHFSTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 169

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 170 FRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 229

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 230 VKTAVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 289

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 290 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 349

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 350 QEVGTLITALGCGIGRAEYNPD 371


>gi|51571611|emb|CAH18972.1| gyrase B [Corallococcus coralloides]
          Length = 367

 Score =  197 bits (500), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 130/379 (34%), Positives = 200/379 (52%), Gaps = 16/379 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG++ VN LS+   V V R   I+ Q ++RG+     ++     +KRGT I F
Sbjct: 1   VSGGLHGVGVTCVNFLSEWFKVRVQRAGKIYEQSYARGVSNGSPQEVG-TTDKRGTTIHF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +PD  +      F+   L +  +  A+L+  +      ++   E         F F GG+
Sbjct: 60  KPDSTVMETV-DFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD-------FKFDGGI 111

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
            ++++   + +  +  +    K+E++G    ++E A+ W +     I ++ N I T EGG
Sbjct: 112 SSFVEYLNKAKEALHDKPVYIKSEREGV---SLEIAMQWNDGYDERIFTFANNINTHEGG 168

Query: 329 THESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTK 386
           +H SG + ALTR +  YAE     + +      +D       ++SV +  P+F GQTKTK
Sbjct: 169 SHLSGFKAALTRTLNSYAEKGGLWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQTKTK 228

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIR 445
           L + + +  VE  + D    +L +NP  A K++  +          R+ +  V RK  + 
Sbjct: 229 LGNSEVKGLVEQMVNDQLASFLEENPPLAKKVVVKIGDACRARLAARKARETVRRKGVLD 288

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC     H +EL+IVEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  E
Sbjct: 289 GGGLPGKLADCQSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFE 348

Query: 506 KIRNNQQIMDLVQALGCRT 524
           K+  + +I+ L+ ALG   
Sbjct: 349 KMLTSAEIVTLITALGTGI 367


>gi|9971291|dbj|BAB12463.1| DNA gyrase B subunit [Oceanospirillum beijerinckii]
          Length = 383

 Score =  197 bits (500), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 135/394 (34%), Positives = 206/394 (52%), Gaps = 17/394 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS++L +TV R   +  Q +  G+P  PL    +         
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKLTLTVWRSGKVHEQVYIHGVPQEPLRVIGETTKTGT-ET 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F    L K  +  ++L+  V      ++         + + F + G
Sbjct: 60  RFHPSAETFSNI-EFHYDILAKRLRELSFLNSGVSIILIDER-------TGKSDNFKYEG 111

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           GL  +++   +N++ ++S        + G     VE A+ W +     I  + N I   +
Sbjct: 112 GLSAFVEYLNQNKTALNSVFHFSSEREDGV---GVEVALQWNDSYQENIYCFTNNIPQRD 168

Query: 327 GGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK
Sbjct: 169 GGTHLAGFRAALTRTLNSYMEQDPKIKKDKVNTSGDDAREGLTAIVSVKVPDPKFSSQTK 228

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTA 443
            KLVS + +  VE  +      YL +NP EA  ++  ++E +  R   RK R    RK A
Sbjct: 229 DKLVSSEVKTAVEQEMGRLLSDYLQENPNEAKSIVNKMLEAARAREAARKAREMTRRKGA 288

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A 
Sbjct: 289 LDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKTQAILPLKGKILNVEKAR 348

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYE 536
            +K+ ++ ++  L+ A+GC   R ++  + LRY 
Sbjct: 349 FDKMLSSAEVGTLITAMGCGIGREEFNPDKLRYH 382


>gi|19909593|dbj|BAB86992.1| DNA gyrase subunit B [Caulobacter vibrioides]
          Length = 402

 Score =  197 bits (500), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 142/411 (34%), Positives = 221/411 (53%), Gaps = 24/411 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV----- 199
            ++Y++SGGLHGVG+SVVNALSD L + + R   +   +F RG  ++ L+          
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSDWLELLIHRNGKVHQMRFERGDAVTSLKVTGDSPVRTE 60

Query: 200 -----RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
                    GT +TF P  + F     FD   L    +  A+L+  V   +   ++    
Sbjct: 61  GPKAGETLTGTEVTFFPSKETFA-FIEFDRKTLEHRLRELAFLNSGVTIWFKDHRDA--- 116

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313
              P +E+ ++ GG++ +++   + ++ +     + +  K       V+ A+ W +    
Sbjct: 117 --EPWEEKLHYDGGIEAFVRHLDKVKTPLLKAPISVRGVKDKV---EVDLALWWNDSYHE 171

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
           ++  + N I   +GGTH S  R ALTR I  YAE +    K  +S+  +D       +LS
Sbjct: 172 QMLCFTNNIPQRDGGTHLSAFRAALTRIITGYAESSGILKKEKVSLGGEDAREGLTCVLS 231

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V + +P+F+ QTK KLVS + +  VE  +++    +  ++P EA  ++  + E +  R  
Sbjct: 232 VKVPDPKFSSQTKDKLVSSEVRPAVEGLVQEGLATWFEEHPNEARAIVSKIAEAAAAREA 291

Query: 432 RRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            RK RE   RK+A+    LPGKLADCS+     +E+FIVEGDSAGGSAKQARNR NQAVL
Sbjct: 292 ARKARELTRRKSALDITSLPGKLADCSERDPAKSEIFIVEGDSAGGSAKQARNRDNQAVL 351

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
           PLRGKILNV  A  +K+ ++ QI  L+ ALG    R  +  + +RY K+++
Sbjct: 352 PLRGKILNVERARFDKMLSSDQIGTLITALGAGIGRDDFNPDKVRYHKIVL 402


>gi|62867458|emb|CAI79640.1| DNA gyrase subunit B [Aeromonas encheleia]
          Length = 372

 Score =  197 bits (500), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 137/382 (35%), Positives = 210/382 (54%), Gaps = 15/382 (3%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++     +  GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPT 60

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   +    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 61  IFTDTL-YHYEILAKRLRELSFLNSGVSIRLEDERDGRE-------MHFCYEGGIKAFVE 112

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 113 YLNQNKTPIHPKVFHFSTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 169

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 170 FRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 229

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 230 VKTAVEQAMGEKLGLFLLENPSDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 289

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 290 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 349

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 350 QEVGTLITALGCGIGRDEYNPD 371


>gi|3021642|dbj|BAA25341.1| DNA gyrase B subunit [Pseudomonas fluorescens]
          Length = 381

 Score =  197 bits (500), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 141/393 (35%), Positives = 211/393 (53%), Gaps = 17/393 (4%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P  P++         GT+I F+P
Sbjct: 1   GGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGD-SESTGTQIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SAETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++         + G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKIL+V  A  +K+
Sbjct: 289 GLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILHVEKARFDKM 348

Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 349 ISSQEVGTLITALGCGIGRDEYNIDKLRYHNII 381


>gi|319958746|gb|ADV90543.1| DNA gyrase subunit B [Bacillus pumilus]
          Length = 366

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 134/375 (35%), Positives = 201/375 (53%), Gaps = 13/375 (3%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LS  L VTV R   I  Q+F RG+P+  L+   +  +  GT   F PDP+IF +   FD 
Sbjct: 1   LSTTLDVTVYRDGKIHHQQFKRGVPVGDLKIIGET-DVTGTTTHFVPDPEIFTETIEFDY 59

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             L    +  A+L+  V       +E  E+        + + GG+K+Y++    ++ ++ 
Sbjct: 60  DTLANRVRELAFLTKGVNIIIEDLREGKERRNE-----YCYEGGIKSYVEHLNRSKEVVH 114

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
            E    + EK G    TVE A+ + +     I S+ N I T EGGTHE+G +  LTR I 
Sbjct: 115 EEPVYIEGEKDGI---TVEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGLTRVIN 171

Query: 344 KYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            YA      +    ++  +D+      I+S+    P+F GQTKTKL + +A+   ++   
Sbjct: 172 DYARKNGVFKDGDSNLSGEDVREGLTAIISIKHPNPQFEGQTKTKLGNSEARTITDSLFS 231

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNI 460
           +  + +L++NP  A K++E  +  +  R+  +K RE   RK+A+    LPGKLADCS   
Sbjct: 232 EALEKFLLENPDSAKKIVEKGLMAARARMAAKKARELTRRKSALEVSSLPGKLADCSSKD 291

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  ++ AL
Sbjct: 292 PSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITAL 351

Query: 521 GCRTRSQYREEDLRY 535
           G      +  E  RY
Sbjct: 352 GTGIGEDFTLEKARY 366


>gi|321401434|gb|ADW83179.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
          Length = 357

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 141/361 (39%), Positives = 200/361 (55%), Gaps = 10/361 (2%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA-RQNTIFSQKFSRGIPLSPLEKKE 197
           AGGKFD  +Y++SGGLHGVG+SVVNALS+ L  TV      I+ Q++ +G  L P+++  
Sbjct: 2   AGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGXIYEQEYEKGKALYPVKQIG 61

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +    RGT +TF PDP IF     +    L    +  ++L+  +   ++  +E  +K G 
Sbjct: 62  ETTK-RGTIVTFYPDPSIFTQTIEYSYDTLSARMRELSFLNKGITITFTDKRE-KDKDGN 119

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
              E F+   GLK Y++    NR      I    +         VE A+ +       I 
Sbjct: 120 FVSEIFHSTEGLKEYIRYLDGNRE---PIIAHVISMDNDKGEIPVEVALIYNTSYTENIF 176

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFI 374
           SY N I T EGGTH  G R  LTR +KKYA+ +    K    I  DD       I+SV +
Sbjct: 177 SYVNNINTHEGGTHLQGFRTGLTRSLKKYADSSGMLDKLKFEISGDDFREGLTAIISVKV 236

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP+F GQTKTKL + +    V  A+ D  ++YL +NP +A  +++ VI  ++ R   +K
Sbjct: 237 AEPQFEGQTKTKLGNREVVSPVSQAVGDMIENYLEENPNDARIIVQKVILAAQARHAAKK 296

Query: 435 QREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            RE+  RKT +    LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPLR
Sbjct: 297 AREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVFLVEGDSAGGTAKQGRDRAFQAILPLR 356

Query: 494 G 494
           G
Sbjct: 357 G 357


>gi|46367513|emb|CAG25878.1| DNA gyrase subunit B [Yersinia kristensenii]
          Length = 346

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 124/357 (34%), Positives = 193/357 (54%), Gaps = 15/357 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS++L + + R+  +  Q +  G+P +PL+   +  ++ GT + F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DQTGTTVRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F +   F    L K  +  ++L+  V       +   E       + F++ GG+
Sbjct: 60  WPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDKRNDRE-------DHFHYEGGI 112

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           + +++   +N++ I  ++F   T K       VE A+ W +     I  + N I   +GG
Sbjct: 113 RAFVEYLSKNKNPIHPKVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGG 169

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH  G R A+TR +  Y        K  IS   DD     + ++SV + +P+F+ QTK K
Sbjct: 170 THLVGFRTAMTRTLNSYMGKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDK 229

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIR 445
           LVS + +  VE  + +    YL++NP +A  ++  +I+        R+ +    RK A+ 
Sbjct: 230 LVSSEVKTAVETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALD 289

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
              LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 LAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 346


>gi|51571601|emb|CAH18967.1| gyrase B [Corallococcus coralloides]
          Length = 367

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 129/379 (34%), Positives = 200/379 (52%), Gaps = 16/379 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG++ VN LS+   V + R   ++ Q ++RG+     ++     +KRGT I F
Sbjct: 1   VSGGLHGVGVTCVNFLSEWFKVRIQRAGKVYEQSYARGVANGSPQEVG-TTDKRGTMIHF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +PD ++      F+   L +  +  A+L+  +      ++   E         F F GG+
Sbjct: 60  KPDTQVMETV-DFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD-------FKFEGGI 111

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
            ++++   + +  +  +    KTE++G    ++E A+ W +     I ++ N I T EGG
Sbjct: 112 SSFVEYLNKAKEALHDKPVFIKTEREGV---SLEIAMQWNDGYDERIFTFANNINTHEGG 168

Query: 329 THESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTK 386
           +H SG + ALTR +  YAE     + +      +D       ++SV +  P+F GQTKTK
Sbjct: 169 SHLSGFKAALTRTLNSYAEKGGLWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQTKTK 228

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIR 445
           L + + +  VE  + D    +L +NP  A K+   +          R+ +  V RK  + 
Sbjct: 229 LGNSEVKGLVEQMVNDQLASFLEENPPLAKKVAAKIGDACRARLAARKARETVRRKGVLD 288

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC     H +EL+IVEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  E
Sbjct: 289 GGGLPGKLADCQSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFE 348

Query: 506 KIRNNQQIMDLVQALGCRT 524
           K+  + +I+ L+ ALG   
Sbjct: 349 KMLTSAEIVTLITALGTGI 367


>gi|207107896|dbj|BAG71960.1| DNA gyrase subunit B [Gordonia desulfuricans]
          Length = 413

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 129/418 (30%), Positives = 206/418 (49%), Gaps = 40/418 (9%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           GISVVNALS ++ V +AR    +++ F+   P      +     K GT + F PDP IF 
Sbjct: 1   GISVVNALSTKVEVEIARDGYNWAETFTDSKPGEL--VQGDATRKTGTTVRFWPDPSIFT 58

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------------------------- 249
           +   F+A  + +  Q  A+L+  +    + ++                            
Sbjct: 59  ETTAFNAETVARRLQEMAFLNKGLTITLTDNRPKAVEVPGDPNGDAETGEGGPDTAEAVK 118

Query: 250 ---EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
              E       P+   +++P GL  Y++     ++ I   +     +  G     VE A+
Sbjct: 119 SEEEKKVAASKPKTRTYHYPDGLVDYIKHINRTKTAIHKSVIGFTGKGTGH---EVEIAM 175

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W +     + ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  DD+ 
Sbjct: 176 QWNDGYSESVHTFANTINTHEGGTHEEGFRAALTRVVNSYARDKKLLKEKDSNLTGDDIR 235

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                ++SV + EP+F GQTKTKL + + +  V+ A  +  +H+   NP EA  ++   +
Sbjct: 236 EGLAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKASGEHLEHWFEANPAEAKVIVNKAV 295

Query: 424 ERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           + +  RL  RK R+ V RK+A     LPGKLADC  N     E+++VEGDSAGGSAK  R
Sbjct: 296 DSAHARLAARKARDLVRRKSATDIGGLPGKLADCRSNDPSKCEVYLVEGDSAGGSAKTGR 355

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 356 DSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDISKLRYHKIVL 413


>gi|161339260|gb|ABX64381.1| GyrB [Gordonia amicalis]
 gi|161339276|gb|ABX64389.1| GyrB [Gordonia amicalis]
 gi|161339278|gb|ABX64390.1| GyrB [Gordonia amicalis]
 gi|161339280|gb|ABX64391.1| GyrB [Gordonia amicalis]
          Length = 408

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 134/413 (32%), Positives = 208/413 (50%), Gaps = 38/413 (9%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+ +Y +SGGLHGVGISVVNALS ++ + +AR    ++Q +S   P +   ++   
Sbjct: 1   GGKFDSDSYAVSGGLHGVGISVVNALSTKVELEIARDGHNWAQTYSYAKPGAL--EQGDA 58

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------- 249
             K GT + F PDP+IF +   F+A  + +  Q  A+L+  +    +  +          
Sbjct: 59  TRKTGTTVRFWPDPEIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEAPGDA 118

Query: 250 -------------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
                              E A+    P+   +++P GL  Y++     +  I + +   
Sbjct: 119 NGDEDAPATDVAEVVLTETEKAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGF 178

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             + +G     VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   
Sbjct: 179 SAKGEGH---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEK 235

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
           +   ++   +  DD+      ++S  + +P+F GQTKTKL + + +  V+    +   H+
Sbjct: 236 KLIKEKDGKLTGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHW 295

Query: 408 LVQNPIEATKLLEWVIER-SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
              NP EA  +++   +        RR +  V RKTA     LPGKLADC  N     E+
Sbjct: 296 FEANPAEAKIIIKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEV 355

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
           +IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A
Sbjct: 356 YIVEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITA 408


>gi|86211173|gb|ABC71060.2| DNA gyrase subunit beta [Pseudomonas pertucinogena]
          Length = 368

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 138/380 (36%), Positives = 207/380 (54%), Gaps = 16/380 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS+EL +T+ R   ++ Q +  G+P +PL    +     GT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEELVMTIRRGGKVWEQTYHHGVPQAPLAIVGET-ETSGTQ 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F+P  + F     F    L K  +  ++L+  V      ++         ++E F + 
Sbjct: 60  IHFKPSKETFSSI-SFSWDILAKRLRELSFLNSGVGINLVDER-------TGKRELFCYE 111

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GGL  +++    N++ ++S          G     VE A+ W +     +  + N I   
Sbjct: 112 GGLSAFVEYLNVNKTTVNSIFHFNVQRDDGI---AVEVAMQWNDSFNENLLCFTNNIPQR 168

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R ALTR +  Y E      K  +S   DD       I+SV + +P+F+ QT
Sbjct: 169 DGGTHLAGFRGALTRSLNNYIEQEGLLKKLKVSTSGDDAREGLTAIISVKVPDPKFSSQT 228

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKT 442
           K KLVS + +  VE  +   F  YL++ P EA  ++  +I+ +  R   RK R    RK 
Sbjct: 229 KDKLVSSEVKTAVEQEMNKFFSDYLLERPNEAKAVVGKMIDAARAREAARKAREMTRRKG 288

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A
Sbjct: 289 ALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKA 348

Query: 503 GSEKIRNNQQIMDLVQALGC 522
             +++ ++Q++  L+ ALGC
Sbjct: 349 RFDRMLSSQEVGTLITALGC 368


>gi|270017260|gb|ACZ58147.1| DNA gyrase subunit B [Gordonia amicalis]
          Length = 424

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 135/429 (31%), Positives = 207/429 (48%), Gaps = 39/429 (9%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+  Y +SGGLHGVGISVVNALS ++ + +A     + Q +S   P    +     
Sbjct: 1   GGKFDSDAYAVSGGLHGVGISVVNALSTKVELEIANDGFNWEQTYSYAKPGPLEK--GDA 58

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP- 258
             K GT + F PDP+IF +   F+A  + +  Q  A+L+  +    +  +  A +     
Sbjct: 59  TRKTGTTVRFWPDPEIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEAPGDA 118

Query: 259 -----------------------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFT 289
                                        +   +++P GL  Y++     +  I + +  
Sbjct: 119 NGDDEAAPTTEVAETVKTETEKAAAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHTTVIG 178

Query: 290 GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
              + +G     VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA  
Sbjct: 179 FNAKGEGH---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALE 235

Query: 349 TQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
            +   ++   +  DD+      ++SV + +P+F GQTKTKL + + +  V+    +   H
Sbjct: 236 KKLIKEKDGKLTGDDIREGLAAVISVKVADPQFEGQTKTKLGNTEIKGFVQRTCNEHLGH 295

Query: 407 YLVQNPIEATKLLEWVIER-SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTE 465
           +   NP EA  +++   +        RR +  V RKTA     LPGKLADC  N     E
Sbjct: 296 WFEANPAEAKIIIKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCE 355

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
           ++IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G    
Sbjct: 356 VYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIH 415

Query: 526 SQYREEDLR 534
            ++    LR
Sbjct: 416 DEFDISKLR 424


>gi|317420214|emb|CBW30264.1| gyrase B subunit [Psychrobacter maritimus]
          Length = 380

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 137/392 (34%), Positives = 212/392 (54%), Gaps = 17/392 (4%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS  L + + R+   + Q ++ G+P   +++ E   +K GT+I F P
Sbjct: 1   GGLHGVGVSVVNALSKTLEMNIWREGYHYHQTYTDGVPDGDIQQMEAT-DKTGTQIRFYP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
              +F     F+   L K  +  ++L+  V+   + ++       I ++ EF   GGL  
Sbjct: 60  SNDVFTGTI-FEYDILAKRLRELSFLNSGVRIVLTDER-------IDKRHEFEHKGGLSE 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++      +  I+        +  G    +VE A+ W +    ++  + N I   +GGTH
Sbjct: 112 FVSYINAGKDGINDVFHFVSEQDDGI---SVEVALQWTDTYNEKVLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            SG R ALTRG+  Y +      K  +    DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LSGFRSALTRGLNSYMDRENLFKKEKVVATGDDAREGLTAIVSVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKL 447
           S + +  VE+A+ D F+ YL++NP     +   +I+ +  R   RK      RKT +   
Sbjct: 229 SSEVKSAVESAMHDKFNDYLLENPSTGKAIASKIIDAARARDAARKAREMTRRKTTLDIA 288

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +EL+IVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+
Sbjct: 289 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRSRKTQAILPLKGKILNVERARFDKM 348

Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
            ++ ++ +L+ ALGC     +Y  + +RY K+
Sbjct: 349 LSSAEVGNLITALGCGIGPDEYNPDKVRYHKI 380


>gi|56675136|emb|CAI34870.1| DNA gyrase subunit B [Aeromonas popoffii]
 gi|56675138|emb|CAI34871.1| DNA gyrase subunit B [Aeromonas sp. F600C]
          Length = 372

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 136/382 (35%), Positives = 209/382 (54%), Gaps = 15/382 (3%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++     +  GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPT 60

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   +    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 61  IFTDTL-YHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVE 112

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F    E+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 113 YLNQNKTPIHPKVFHFSIEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 169

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 170 FRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 229

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 230 VKTAVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 289

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 290 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 349

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 350 QEVGTLITALGCGIGRDEYNPD 371


>gi|219944510|gb|ACL55029.1| DNA gyrase B subunit [Dietzia natronolimnaea]
 gi|219944512|gb|ACL55030.1| DNA gyrase B subunit [Dietzia natronolimnaea]
 gi|219944514|gb|ACL55031.1| DNA gyrase B subunit [Dietzia natronolimnaea]
 gi|219944516|gb|ACL55032.1| DNA gyrase B subunit [Dietzia natronolimnaea]
 gi|219944520|gb|ACL55034.1| DNA gyrase B subunit [Dietzia natronolimnaea]
 gi|219944522|gb|ACL55035.1| DNA gyrase B subunit [Dietzia natronolimnaea]
 gi|219944524|gb|ACL55036.1| DNA gyrase B subunit [Dietzia natronolimnaea]
 gi|219944528|gb|ACL55038.1| DNA gyrase B subunit [Dietzia natronolimnaea]
 gi|323362417|gb|ADX42121.1| DNA gyrase beta subunit [Dietzia cercidiphylli]
          Length = 440

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 138/443 (31%), Positives = 211/443 (47%), Gaps = 61/443 (13%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD+ +Y +SGGLHGVGISVVNALS  + V + R   ++ Q F+  +P   ++      
Sbjct: 1   GKFDSDSYAVSGGLHGVGISVVNALSTRVEVQIKRDGRLWQQNFNMAVPEELVDA--GPA 58

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI--- 257
              GTR+ F  D  IF     +D   + +  Q  A+L+  +    +  +  AE+      
Sbjct: 59  EGTGTRVRFWADGSIFEST-EYDFDVVARRLQEMAFLNKGLTITLTDRRSRAEQAAELDA 117

Query: 258 ------------------------------------------------PEKEEFYFPGGL 269
                                                             K  F++P GL
Sbjct: 118 IADSEGRGSDSAPGSDEGSDIEHAVDAEQAFVEGAVETTEPAEPVKVRERKRTFHYPDGL 177

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K Y+    ++++ I   I   + +  G     VE A+ W       + ++ NTI T EGG
Sbjct: 178 KDYVTAINKSKTAIHQTILYFEGKGTGH---EVEVAMQWNSGYSESVHTFANTINTHEGG 234

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           THE G R ALT  + KYA   +   ++  ++  DD+      ++S  I +P+F GQTKTK
Sbjct: 235 THEEGFRAALTSLVNKYARDKKLLKEKDPNLTGDDIREGLAAVISAKISDPQFEGQTKTK 294

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIR 445
           L + + +  ++  + +   H+   NP EA  ++   I  S+ R+  RK RE+  RK+A  
Sbjct: 295 LGNTEVKGFIQRQVSEHVGHWFEANPAEARVIVNKGIASSQARVAARKAREMVRRKSATD 354

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC       +EL+IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  +  +
Sbjct: 355 IGGLPGKLADCRSKDPAKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKSRID 414

Query: 506 KIRNNQQIMDLVQALGCRTRSQY 528
           K+  N ++  ++ ALG     ++
Sbjct: 415 KVLKNTEVQAIITALGTGIHEEF 437


>gi|19909565|dbj|BAB86978.1| DNA gyrase subunit B [Brevundimonas diminuta]
          Length = 399

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 140/408 (34%), Positives = 214/408 (52%), Gaps = 21/408 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV----- 199
            ++Y++SGGLHGVG+SVVNALSD L + + R     S +F RG  +  L           
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSDWLELVIYRDGKKHSVRFERGETVRSLAVVGDAPMRED 60

Query: 200 --RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
             R   GT +TF P    F     FD   L    +  A+L+  V    S  +        
Sbjct: 61  KGRLLTGTEVTFFPSVTTFS-HIDFDLKTLEHRLRELAFLNSGVVIKLSDHR-----GPE 114

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
           P +   ++ GG++ +++   ++++ I  ++   + +K G     ++ A+ W +     + 
Sbjct: 115 PIEIMLHYEGGVEAFVRHLDKSKTPILKDVIVIRGQKDGI---ELDLALWWNDSYHETML 171

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
            + N I   +GGTH S  R +LTR +  Y E +    K  ++   +D       +LSV +
Sbjct: 172 CFTNNIPQRDGGTHLSAFRASLTRVMGSYIESSGLAKKEKVAPTGEDAREGLTCVLSVKV 231

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            +P+F+ QTK KLVS + +  VE+   +    +  ++P+EA  ++  +IE +  R   RK
Sbjct: 232 PDPKFSSQTKDKLVSSEVRPAVESLCSEGLATWFEEHPVEAKMIVSKIIEAASAREAARK 291

Query: 435 QRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            R+   RK+A+    LPGKLADC +     +ELFIVEGDSAGGSAKQARNR NQAVLPLR
Sbjct: 292 ARDLTRRKSALEISSLPGKLADCQERDPAKSELFIVEGDSAGGSAKQARNRENQAVLPLR 351

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVII 540
           GKILNV  A  +++ ++  I  L+ ALG          + LRY K+I+
Sbjct: 352 GKILNVERARFDRMLSSDLIGTLILALGTGIGRDDFNADKLRYHKIIL 399


>gi|219944518|gb|ACL55033.1| DNA gyrase B subunit [Dietzia natronolimnaea]
          Length = 440

 Score =  197 bits (500), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 138/443 (31%), Positives = 211/443 (47%), Gaps = 61/443 (13%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD+ +Y +SGGLHGVGISVVNALS  + V + R   ++ Q F+  +P   ++      
Sbjct: 1   GKFDSDSYAVSGGLHGVGISVVNALSTRVEVQIKRDGRLWQQNFNMAVPEKLVDA--GPA 58

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI--- 257
              GTR+ F  D  IF     +D   + +  Q  A+L+  +    +  +  AE+      
Sbjct: 59  EGTGTRVRFWADGSIFEST-EYDFDVVARRLQEMAFLNKGLTITLTDRRSRAEQAAELDA 117

Query: 258 ------------------------------------------------PEKEEFYFPGGL 269
                                                             K  F++P GL
Sbjct: 118 IADSEGRGSDSAPGSDEGSDIEHAVDAEQAFVEGAVETTEPAEPVKVRERKRTFHYPDGL 177

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K Y+    ++++ I   I   + +  G     VE A+ W       + ++ NTI T EGG
Sbjct: 178 KDYVTAINKSKTAIHQTILYFEGKGTGH---EVEVAMQWNSGYSESVHTFANTINTHEGG 234

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           THE G R ALT  + KYA   +   ++  ++  DD+      ++S  I +P+F GQTKTK
Sbjct: 235 THEEGFRAALTSLVNKYARDKKLLKEKDPNLTGDDIREGLAAVISAKISDPQFEGQTKTK 294

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIR 445
           L + + +  ++  + +   H+   NP EA  ++   I  S+ R+  RK RE+  RK+A  
Sbjct: 295 LGNTEVKGFIQRQVSEHVGHWFEANPAEARVIVNKGIASSQARVAARKAREMVRRKSATD 354

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC       +EL+IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  +  +
Sbjct: 355 IGGLPGKLADCRSKDPAKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKSRID 414

Query: 506 KIRNNQQIMDLVQALGCRTRSQY 528
           K+  N ++  ++ ALG     ++
Sbjct: 415 KVLKNTEVQAIITALGTGIHEEF 437


>gi|227326766|ref|ZP_03830790.1| DNA gyrase subunit B [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 479

 Score =  196 bits (499), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 102/237 (43%), Positives = 155/237 (65%), Gaps = 2/237 (0%)

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + +P+F+ QTK KLVS + +  VE+ + +    YL++NP +A  ++  +I+ +  R   R
Sbjct: 2   VPDPKFSSQTKDKLVSSEVKTVVESLMNEKLVDYLMENPSDAKIVVGKIIDAARAREAAR 61

Query: 434 KQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           K      RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL
Sbjct: 62  KARDMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPL 121

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHI 551
           +GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI
Sbjct: 122 KGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHI 181

Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
            +LLLTFFY+++ +++E+ H+++  PPL+++ +G +  Y  D+E   +        G
Sbjct: 182 RTLLLTFFYRQLPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQIALALDG 238



 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ LE   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 394 FEQALEWLVKESRRGLTIQRYKGLGEMNPDQLWETTMDPASRRMLRVTVKDAI----AAD 449

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           +    LMG   + R  FI+E A    ++ 
Sbjct: 450 ELFTTLMGDAVEPRRAFIEENALKAMNID 478


>gi|157073779|dbj|BAF79888.1| gyrase B [Methylobacterium aminovorans]
          Length = 399

 Score =  196 bits (499), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 142/408 (34%), Positives = 219/408 (53%), Gaps = 21/408 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS  L + + R       +F  G  ++PLE      ++RG
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSVSLKLRIWRAGKEHRMEFHHGDAVAPLEVVGPAGDRRG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF P P  F     FD A L K  +  A+L+  V+   +  +     +    +EE  
Sbjct: 61  TEVTFLPSPDTF-TMTEFDFATLEKRLRELAFLNSGVRIVLTDAR-----HAEHRREELC 114

Query: 265 FPGGLKTYLQTKLENRSLIS--SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           + GG++ +++    +R  +   ++  T   E+ G     VE A  W +     +  + N 
Sbjct: 115 YEGGVEAFVRYLDRSRKPVDGMAKPVTVLGERDGI---RVEVAFWWNDSFNETVLPFTNN 171

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R ALTR +  YAE +    K  +S+  DD       ++SV + +P+F
Sbjct: 172 IPQRDGGTHMAGFRAALTRQLTGYAESSGIAKKEKVSLTGDDCREGLTAVISVQVPDPKF 231

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK-LLEWVIERSEERLRRRKQREV 438
           + QTK KLVS + +  VEN L +    +L +NP +A   + + V+  +     R+ +  +
Sbjct: 232 SSQTKDKLVSSEVRPAVENILNEGLSTWLEENPAQAKSVMGKVVLAAAAREAARKARETI 291

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +      EL +VEGDSAGGSAKQ R+R+ QAVLPLRGKILN
Sbjct: 292 TRKGALDIASLPGKLADCQERDPSKCELLLVEGDSAGGSAKQGRDRTFQAVLPLRGKILN 351

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVII 540
           V    ++++ ++ +I  L+ ALG         R  +  + LRY ++II
Sbjct: 352 VERVRADRMLSSAEIGTLITALGAGIGRSSTDREGFNPDKLRYHRIII 399


>gi|298364144|gb|ADI79215.1| GyrB [Verrucosispora lutea]
          Length = 372

 Score =  196 bits (499), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 117/378 (30%), Positives = 196/378 (51%), Gaps = 9/378 (2%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS ++ V + +   ++ Q++    P    +   +  ++ G+ ++F 
Sbjct: 1   SGGLHGVGVSVVNALSTKMAVEIHKDGFVWRQQYHHSKPTPLEK--GESTDRTGSAVSFW 58

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PDP +F     FD   + +  Q  A+L+  +      ++    + G   +  F + GG+ 
Sbjct: 59  PDPDVFETV-DFDFQTIYRRLQEMAFLTRGLTINLLDERVAEGEEGKIREVTFKYDGGIA 117

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++    +++ I   +     E++G    ++E A+ W E     + ++ N I T EGGT
Sbjct: 118 DFVRHLNASKTPIHKTVVEYGAEEEG---MSLEIAMQWNESYGESVYTFANNINTHEGGT 174

Query: 330 HESGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           HE G R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQTKTKL 
Sbjct: 175 HEEGFRAALTSVVNRYGAEKKLLKGDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLG 234

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKL 447
           +   +  V+    D    +L +NP EA  ++ +           ++ ++   RK+ +   
Sbjct: 235 NTPVKSFVQRVCNDRLVDWLDRNPAEAKIIITKASQAARARIAAQQARKLARRKSLLESG 294

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++
Sbjct: 295 SMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRV 354

Query: 508 RNNQQIMDLVQALGCRTR 525
             N ++  L+ ALG    
Sbjct: 355 LKNNEVQALITALGTGIH 372


>gi|57490121|gb|AAW51350.1| GyrB [Pseudomonas fluorescens]
          Length = 375

 Score =  196 bits (499), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 136/387 (35%), Positives = 206/387 (53%), Gaps = 17/387 (4%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS+EL +T+ R   I+ Q +  G+P  P++         GT+I 
Sbjct: 1   KVSGGLHGVGVSVVNALSEELILTIRRSGKIWEQTYVHGVPQEPMKIVGDC-ETTGTQIH 59

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F+P  + F +   F    L K  +  ++L+  V      ++   E       E F + GG
Sbjct: 60  FKPSAETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGG 111

Query: 269 LKTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           L+ +++    N++ ++       + E+ G     VE A+ W +     +  + N I   +
Sbjct: 112 LRAFVEYLNTNKTAVNQVFHFNIQREEDGI---GVEVALQWNDSFNENLLCFTNNIPQRD 168

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH  G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK
Sbjct: 169 GGTHLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTK 228

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTA 443
            KLVS + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A
Sbjct: 229 DKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGA 288

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A 
Sbjct: 289 LDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKAR 348

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYRE 530
            +K+ ++Q++  L+  LGC        
Sbjct: 349 FDKMISSQEVGTLITGLGCGIGRDEYN 375


>gi|219944534|gb|ACL55041.1| DNA gyrase B subunit [Dietzia psychralcaliphila]
          Length = 440

 Score =  196 bits (499), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 138/443 (31%), Positives = 211/443 (47%), Gaps = 61/443 (13%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD+ +Y +SGGLHGVGISVVNALS  + V + R   ++ Q F   +P   ++      
Sbjct: 1   GKFDSDSYAVSGGLHGVGISVVNALSTRVEVQIKRDGRLWQQDFDMAVPKELVDA--GPA 58

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI--- 257
              GTR+ F  DP IF     ++   + +  Q  A+L+  +    +  +  AE+      
Sbjct: 59  EGTGTRVRFWADPSIFEST-EYEFDVVARRLQEMAFLNKGLTITLTDRRSRAEQAAELDA 117

Query: 258 ------------------------------------------------PEKEEFYFPGGL 269
                                                             K  F++P GL
Sbjct: 118 IADSEGRGSDSAPGSDEGSDIEHAVDAERAFVEGAVETTEPAAPVKVRERKRTFHYPDGL 177

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K Y+    ++++ I   I   + +  G     VE A+ W       + ++ NTI T EGG
Sbjct: 178 KDYVTAINKSKTAIHQTILYFEGKGTGH---EVEVAMQWNSGYSESVHTFANTINTHEGG 234

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           THE G R ALT  + KYA   +   ++  ++  DD+      ++S  I +P+F GQTKTK
Sbjct: 235 THEEGFRAALTLLVNKYARDKKLLKEKDPNLTGDDIREGLAAVISAKISDPQFEGQTKTK 294

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIR 445
           L + + +  ++  + +   H+   NP EA  ++   I  S+ R+  RK RE+  RK+A  
Sbjct: 295 LGNTEVKGFIQRQVSEHVGHWFEANPAEARVIINKGIASSQARVAARKAREMVRRKSATD 354

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC       +EL+IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  +  +
Sbjct: 355 IGGLPGKLADCRSKDPAKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKSRID 414

Query: 506 KIRNNQQIMDLVQALGCRTRSQY 528
           K+  N ++  ++ ALG     ++
Sbjct: 415 KVLKNTEVQAIITALGTGIHEEF 437


>gi|161339232|gb|ABX64367.1| GyrB [Gordonia amicalis]
 gi|161339238|gb|ABX64370.1| GyrB [Gordonia amicalis]
 gi|161339246|gb|ABX64374.1| GyrB [Gordonia amicalis]
 gi|161339248|gb|ABX64375.1| GyrB [Gordonia amicalis]
 gi|161339250|gb|ABX64376.1| GyrB [Gordonia amicalis]
 gi|161339262|gb|ABX64382.1| GyrB [Gordonia amicalis]
 gi|161339282|gb|ABX64392.1| GyrB [Gordonia amicalis]
          Length = 408

 Score =  196 bits (499), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 134/413 (32%), Positives = 208/413 (50%), Gaps = 38/413 (9%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+ +Y +SGGLHGVGISVVNALS ++ + +AR    ++Q +S   P +   ++   
Sbjct: 1   GGKFDSDSYAVSGGLHGVGISVVNALSTKVELEIARDGHNWAQTYSYAKPGAL--EQGDA 58

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------- 249
             K GT + F PDP+IF +   F+A  + +  Q  A+L+  +    +  +          
Sbjct: 59  TRKTGTTVRFWPDPQIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEAPGDA 118

Query: 250 -------------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
                              E A+    P+   +++P GL  Y++     +  I + +   
Sbjct: 119 NGDEDAPATDVAEVVLTETEKAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGF 178

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             + +G     VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   
Sbjct: 179 SAKGEGH---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEK 235

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
           +   ++   +  DD+      ++S  + +P+F GQTKTKL + + +  V+    +   H+
Sbjct: 236 KLIKEKDGKLTGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHW 295

Query: 408 LVQNPIEATKLLEWVIER-SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
              NP EA  +++   +        RR +  V RKTA     LPGKLADC  N     E+
Sbjct: 296 FEANPAEAKIIIKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEV 355

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
           +IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A
Sbjct: 356 YIVEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITA 408


>gi|207107932|dbj|BAG71978.1| DNA gyrase subunit B [Mycobacterium tuberculosis]
          Length = 406

 Score =  196 bits (499), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 127/412 (30%), Positives = 203/412 (49%), Gaps = 35/412 (8%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS  L V + R    +SQ + +  PL    K+     K G+ + F  DP +F 
Sbjct: 1   GVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLGL--KQGAPTKKTGSTVRFWADPAVFE 58

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY---------------------- 255
               +D   + +  Q  A+L+  +    + ++   ++                       
Sbjct: 59  TT-EYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASERAAES 117

Query: 256 ---GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
                 +   F++PGGL  +++     ++ I S I     +  G     VE A+ W    
Sbjct: 118 TAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGH---EVEIAMQWNAGY 174

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369
              + ++ NTI T EGGTHE G R ALT  + KYA+  +    +  ++  DD+      +
Sbjct: 175 SESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAV 234

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           +SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  ++   +  ++ R
Sbjct: 235 ISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQAR 294

Query: 430 LRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
           +  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGGSAK  R+   QA
Sbjct: 295 IAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQA 354

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY K+++
Sbjct: 355 ILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRYHKIVL 406


>gi|161339244|gb|ABX64373.1| GyrB [Gordonia sp. CC-MJ-6b]
 gi|161339256|gb|ABX64379.1| GyrB [Gordonia sp. CC-MJ-19]
          Length = 408

 Score =  196 bits (499), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 133/413 (32%), Positives = 209/413 (50%), Gaps = 38/413 (9%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+ +Y +SGGLHGVGISVVNALS ++ + +AR    ++Q ++   P +   ++ + 
Sbjct: 1   GGKFDSDSYAVSGGLHGVGISVVNALSTKVELEIARDGHNWAQTYTYAKPGAL--EQGEA 58

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------- 249
             K GT + F PDP+IF +   F+A  + +  Q  A+L+  +    +  +          
Sbjct: 59  TRKTGTTVRFWPDPEIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVETPGDA 118

Query: 250 -------------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
                              E A+    P+   +++P GL  Y++     +  I + +   
Sbjct: 119 NGDEEAPTTEVAEVVQTETEKAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGF 178

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             + +G     VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   
Sbjct: 179 SAKGEGH---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDK 235

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
           +   ++   +  DD+      ++S  + +P+F GQTKTKL + + +  V+    +   H+
Sbjct: 236 KLIKEKDGKLTGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHW 295

Query: 408 LVQNPIEATKLLEWVIER-SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
              NP EA  +++   +        RR +  V RKTA     LPGKLADC  N     E+
Sbjct: 296 FEANPAEAKIIIKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEV 355

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
           +IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A
Sbjct: 356 YIVEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITA 408


>gi|284027866|gb|ADB66753.1| DNA gyrase subunit beta [Aeromonas sp. 'CDC 2478-85']
 gi|284027868|gb|ADB66754.1| DNA gyrase subunit beta [Aeromonas sp. CECT 5178]
          Length = 371

 Score =  196 bits (499), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 141/383 (36%), Positives = 212/383 (55%), Gaps = 16/383 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALSD L +T+ RQ  ++ Q +  G P +PL++        GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSDTLKLTIRRQGHVYEQTYKLGEPQAPLKQIGDAT-TTGTEVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P P IF D   F    L K  +  ++L+  V    + +++  E         F + GG+K
Sbjct: 60  PSPTIFSDTL-FHYEILAKRLRELSFLNSGVSILLADERDGRE-------VHFCYEGGIK 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   ++++ I  ++F    ++ G     VE A+ W +     +  + N I   +GGT
Sbjct: 112 AFVEYLNQSKTPIHQKVFHFSADQDGI---GVEVAMQWNDGYQEGVYCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R ALTR +  Y +      K   S   DD+    V ++SV + +P+F+ QTK KL
Sbjct: 169 HLAGFRAALTRTLNSYMDKEDYSKKAKTSASGDDVREGLVAVISVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRK 446
           VS + +  VE A+ D    +L++NP +A  ++  +I+ +  R   RK R    RK A+  
Sbjct: 229 VSSEVKTAVEQAMADKLADFLLENPGDAKIVVNKIIDAARAREAARKAREMTRRKGALDI 288

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 289 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 348

Query: 507 IRNNQQIMDLVQALGCRTRSQYR 529
           + ++Q++  L+ ALGC       
Sbjct: 349 MISSQEVGTLITALGCGIGRDEY 371


>gi|66474551|gb|AAY46845.1| GyrB [Aeromonas salmonicida subsp. salmonicida]
          Length = 372

 Score =  196 bits (499), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 137/382 (35%), Positives = 209/382 (54%), Gaps = 15/382 (3%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++     +  GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPT 60

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   +    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 61  IFTDTL-YHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVE 112

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 113 YLNQNKTPIHPKVFHFSTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 169

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 170 FRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 229

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
               VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 230 VNTAVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 289

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 290 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 349

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 350 QEVGTLITALGCGIGRDEYNPD 371


>gi|219944540|gb|ACL55044.1| DNA gyrase B subunit [Dietzia kunjamensis]
          Length = 444

 Score =  196 bits (499), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 138/447 (30%), Positives = 209/447 (46%), Gaps = 65/447 (14%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD+ +Y +SGGLHGVGISVVNALS  + V + R   ++ Q F   +P   ++      
Sbjct: 1   GKFDSDSYAVSGGLHGVGISVVNALSTRVEVQIKRDGRLWKQDFDMAVPAELIDA--GPA 58

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC------------- 247
              GTR+ F  DP IF     ++   + +  Q  A+L+  +    +              
Sbjct: 59  EGTGTRVRFWADPTIFEST-EYEFDVVARRLQEMAFLNKGLTITLTDRRPRAEKAAELDA 117

Query: 248 ---------------------------DKEIAEKYGIPEKE---------------EFYF 265
                                      ++   E     E                  F++
Sbjct: 118 IADSEGSGAEAAPGSDEGSDLTHAVDAERAFVEGAQETEAVEVTPAEPVKVHERKRTFHY 177

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
           P GLK Y+    ++++ I   I     +  G     VE A+ W       + ++ NTI T
Sbjct: 178 PDGLKDYVTAINKSKTSIHPTILYFDGKGPGH---EVEVAMQWNSGYSESVHTFANTINT 234

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            EGGTHE G R ALT  + KYA   +   ++  ++  DD+      ++S  I +P+F GQ
Sbjct: 235 HEGGTHEEGFRAALTSLVNKYAREKKLVKEKDPNLTGDDIREGLAAVISAKIADPQFEGQ 294

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRK 441
           TKTKL + + +  V+  + +   H+   NP EA  ++   I  S+ R+  RK RE+  RK
Sbjct: 295 TKTKLGNTEVKGFVQRQVSEHVGHWFEANPAEAKVIINKAIASSQARVAARKAREMVRRK 354

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           +A     LPGKLADC       +EL+IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  
Sbjct: 355 SATDIGGLPGKLADCRSKDPAKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEK 414

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQY 528
           +  +K+  N ++  ++ ALG     ++
Sbjct: 415 SRIDKVLKNAEVQAIITALGTGIHEEF 441


>gi|157073799|dbj|BAF79898.1| gyrase B [Methylobacterium organophilum]
          Length = 399

 Score =  196 bits (499), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 144/408 (35%), Positives = 218/408 (53%), Gaps = 21/408 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS  L + + R       +F  G  ++PLE       +RG
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSTCLKLRIWRGGKEHRMEFRHGDAVAPLEVVGPAGERRG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF P P+ F     FD   L K  +  A+L+  V+   +  +    K      EE  
Sbjct: 61  TEVTFYPSPETF-SMIEFDYPTLEKRLRELAFLNSGVRIVLTDARHAEHKR-----EELC 114

Query: 265 FPGGLKTYLQTKLENRSLIS--SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           + GG++ +++    +R  +   S+  T   E+ G     VE A  W +     +  + N 
Sbjct: 115 YQGGVEAFVRYLDRSRKPVEGMSKPVTVLGERDGI---RVECAFWWNDSFNETVLPFTNN 171

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R ALTR +  YAE +    K  +++  DD       I+SV + +P+F
Sbjct: 172 IPQRDGGTHLAGFRAALTRQLTGYAESSGIAKKEKVALTGDDCREGLTAIVSVQVPDPKF 231

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK-LLEWVIERSEERLRRRKQREV 438
           + QTK KLVS + +  VEN L +   ++L ++P EA   + + V+  +     R+ +  +
Sbjct: 232 SSQTKDKLVSSEVRPAVENILNEGLSNWLEEHPGEARSVMGKVVLAAAAREAARKARETI 291

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +      EL +VEGDSAGGSAKQ R+R+ QAVLPLRGKILN
Sbjct: 292 TRKGALDIASLPGKLADCQERDPSKCELLLVEGDSAGGSAKQGRDRTFQAVLPLRGKILN 351

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVII 540
           V    ++++ ++ +I  L+ ALG         R  +  E LRY ++II
Sbjct: 352 VERVRADRMLSSAEIGTLITALGAGIGRSSTDREGFNPEKLRYHRIII 399


>gi|311788330|gb|ADQ12752.1| GyrB [Micromonospora eburnea]
          Length = 371

 Score =  196 bits (499), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 115/375 (30%), Positives = 194/375 (51%), Gaps = 9/375 (2%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+S  NALS ++ V + +   ++ Q++    P    +   +  ++ G+ ++F 
Sbjct: 1   SGGLHGVGVSDENALSTKMAVEIHKDGFVWRQQYHNSKPTPLEK--GEPTDRTGSAVSFW 58

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PDP +F     FD   + +  Q  A+L+  +      ++    + G P +  F++ GG+ 
Sbjct: 59  PDPDVFETV-DFDFQTIYRRLQEMAFLTRGLTIHLLDERAPEGEEGKPREVTFHYEGGIA 117

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++    +++ I   +     E++G    +VE A+ W E     + ++ N I T EGGT
Sbjct: 118 DFVRHLNASKNPIHKTVVEFGAEEEG---MSVEIAMQWNESYGESVYTFANNINTHEGGT 174

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISI-ISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           HE G R ALT  + +Y    +  +       +D+      I+SV +  P+F GQTKTKL 
Sbjct: 175 HEEGFRAALTSVVNRYGADKKLLKGDERLSGEDIREGLAAIISVKLTNPQFEGQTKTKLG 234

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKL 447
           +   +  V+    +    +  +NP EA  ++ +           ++ ++   RK+ +   
Sbjct: 235 NTPVKSFVQRVCNESLVDWFDRNPAEAKIIITKASQAARARIAAQQARKLARRKSLLESG 294

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++
Sbjct: 295 SMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRV 354

Query: 508 RNNQQIMDLVQALGC 522
             N ++  L+ ALG 
Sbjct: 355 LKNNEVQALITALGT 369


>gi|146164151|gb|ABQ08738.1| DNA gyrase subunit beta [Aeromonas sharmana]
          Length = 368

 Score =  196 bits (499), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 136/379 (35%), Positives = 209/379 (55%), Gaps = 15/379 (3%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ RQ  ++ Q +  G P +PL++     ++ GT I F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRQGHVYEQTYFLGEPEAPLKQIGD-SDQTGTEIRFWPSPT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L+K  +  ++L+  V      +++  E       + F++ GG++ +++
Sbjct: 60  IFSDTL-FHYEILVKRLRELSFLNSGVAIHLEDERDNRE-------QHFHYEGGIRAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  + F    E+      TVE A+ W +     +  + N I   +GGTH +G
Sbjct: 112 FLNQNKTPIHPKAFYFAQERDD--GITVEVAMQWNDSYQENVYCFTNNIPQRDGGTHLAG 169

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD       ++SV + +P+F+ QTK KLVS +
Sbjct: 170 FRAALTRTLNNYMDKEGYSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSE 229

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLP 450
            +  VE  + +  D YL++NP +A  ++  +I+ +  R   RK R    RK A+    LP
Sbjct: 230 VKTAVEQCMGEKLDEYLLENPADAKTVVTKIIDAARAREAARKAREMTRRKGALDLAGLP 289

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++
Sbjct: 290 GKLADCQERDPALSELYIVEGDSAGGSAKQGRNRKFQAILPLKGKILNVEKARFDKMLSS 349

Query: 511 QQIMDLVQALGCRTRSQYR 529
           Q++  L+ ALGC       
Sbjct: 350 QEVATLITALGCGIGRDEY 368


>gi|29652839|gb|AAO87389.1| DNA gyrase B [Listeria monocytogenes]
          Length = 159

 Score =  196 bits (499), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 73/158 (46%), Positives = 101/158 (63%), Gaps = 2/158 (1%)

Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523
           +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I  N++I  +  A+G  
Sbjct: 4   SELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEEIRTIFTAMGTG 63

Query: 524 TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT 583
               +     RY K+IIMTDADVDGAHI +LLLT FY+ M  L++  ++++  PPL++I 
Sbjct: 64  FGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIK 123

Query: 584 QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
            G +  Y + +   +  L      G  K  I R+KGLG
Sbjct: 124 HGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYKGLG 159


>gi|56675146|emb|CAI34875.1| DNA gyrase subunit B [Aeromonas sp. F729F]
 gi|56675148|emb|CAI34876.1| DNA gyrase subunit B [Aeromonas eucrenophila]
 gi|83683052|emb|CAJ47370.1| DNA gyrase subunit B [Aeromonas eucrenophila]
 gi|83683054|emb|CAJ47371.1| DNA gyrase subunit B [Aeromonas eucrenophila]
          Length = 372

 Score =  196 bits (498), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 137/382 (35%), Positives = 210/382 (54%), Gaps = 15/382 (3%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++     +  GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPT 60

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   +    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 61  IFSDTL-YHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVE 112

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 113 YLNQNKTPIHQKVFHFSTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 169

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 170 FRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 229

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 230 VKTAVEQAMGEKLAEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 289

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 290 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 349

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 350 QEVGTLITALGCGIGRDEYNPD 371


>gi|219944526|gb|ACL55037.1| DNA gyrase B subunit [Dietzia natronolimnaea]
          Length = 440

 Score =  196 bits (498), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 138/443 (31%), Positives = 210/443 (47%), Gaps = 61/443 (13%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD+ +Y +SGGLHGVGISVVNALS  + V + R   ++ Q F+  +P   ++      
Sbjct: 1   GKFDSDSYAVSGGLHGVGISVVNALSTRVEVQIKRDGRLWQQNFNMAVPEELVDA--GPA 58

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI--- 257
              GTR+ F  D  IF     +D   + +  Q  A+L+  +    +  +  AE+      
Sbjct: 59  EGTGTRVRFWADGSIFEST-EYDFDVVARRLQEMAFLNKGLTITLTDRRSRAEQAAELDA 117

Query: 258 ------------------------------------------------PEKEEFYFPGGL 269
                                                             K  F++P GL
Sbjct: 118 IADSEGRGSDSAPGSDEGSDIEHAVDAEQAFVEGAVETTEPAEPVKVRERKRTFHYPDGL 177

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K Y+    ++++ I   I   + +  G     VE A+ W       + ++ NTI T EGG
Sbjct: 178 KDYVTAINKSKTAIHQTILYFEGKGTGH---EVEVAMQWNSGYSESVHTFANTINTHEGG 234

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           THE G R ALT  + KYA   +   ++  ++  DD+      ++S  I +P+F GQTKTK
Sbjct: 235 THEEGFRAALTSLVNKYARDKKLLKEKDPNLTGDDIREGLAAVISAKISDPQFEGQTKTK 294

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIR 445
           L + + +  ++  + +   H+   NP EA  ++   I  S+ R+  RK RE+  RK+A  
Sbjct: 295 LGNTEVKGFIQRQVSEHVGHWFEANPAEARVIVNKGIASSQARVAARKAREMVRRKSATD 354

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC       +EL+IVEGDSAGGSAK  R+   QA+LPLRGKI+NV     +
Sbjct: 355 IGGLPGKLADCRSKDPAKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKPRID 414

Query: 506 KIRNNQQIMDLVQALGCRTRSQY 528
           K+  N ++  ++ ALG     ++
Sbjct: 415 KVLKNTEVQAIITALGTGIHEEF 437


>gi|157073785|dbj|BAF79891.1| gyrase B [Methylobacterium extorquens]
 gi|157073787|dbj|BAF79892.1| gyrase B [Methylobacterium extorquens]
          Length = 399

 Score =  196 bits (498), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 139/408 (34%), Positives = 216/408 (52%), Gaps = 21/408 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS  L + + R       +F  G  ++PLE      ++RG
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSTSLKLRIWRGGKEHRMEFRHGDAVAPLEVVGPAGDRRG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF P  + F     FD   L K  +  A+L+  V+   +  +    K      EE  
Sbjct: 61  TEVTFLPSTETF-TMTEFDYPTLEKRLRELAFLNSGVRIVVTDARHAEHKR-----EELC 114

Query: 265 FPGGLKTYLQTKLENRSLIS--SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           + GG++ +++    +R  +   ++  T   E+ G     VE A+ W +     +  + N 
Sbjct: 115 YEGGVEAFVRYLDRSRKPVDGMTKPVTVLGERDGI---RVEVALWWNDSFNETVLPFTNN 171

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R ALTR +  YAE +   +   +    DD       ++SV + +P+F
Sbjct: 172 IPQRDGGTHMAGFRAALTRQLTGYAESSGIAKREKVSLTGDDCREGLTAVISVQVPDPKF 231

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK-LLEWVIERSEERLRRRKQREV 438
           + QTK KLVS + +  VEN L +    +L +NP +A   + + V+  +     R+ +  +
Sbjct: 232 SSQTKDKLVSSEVRPAVENILNEGLSTWLEENPAQAKSVMGKVVLAAAAREAARKARETI 291

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +      EL +VEGDSAGGSAKQ R+R+ QAVLPLRGKILN
Sbjct: 292 TRKGALDIASLPGKLADCQERDPSKCELLLVEGDSAGGSAKQGRDRTFQAVLPLRGKILN 351

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVII 540
           V    ++++ ++ +I  L+ ALG         R  +  + LRY ++II
Sbjct: 352 VERVRADRMLSSAEIGTLITALGAGIGRSSTDREGFNPDKLRYHRIII 399


>gi|19909567|dbj|BAB86979.1| DNA gyrase subunit B [Brevundimonas vesicularis]
          Length = 397

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 139/406 (34%), Positives = 217/406 (53%), Gaps = 21/406 (5%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------- 199
           +Y++SGGLHGVG+SVVNALSD L + + R       +F RG  +  LE            
Sbjct: 1   SYKVSGGLHGVGVSVVNALSDWLELKIYRDGKAHEMRFERGDTVKSLEVTGDAPIREDTG 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
           +   GT +TF P    F     FD   L    +  A+L+  V    +  +     +  P 
Sbjct: 61  KPLSGTEVTFFPSVTTF-SHIDFDLKTLEHRLRELAFLNSGVVIKLADQR-----HAEPV 114

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
           +   ++ GG++ +++   ++++ I  ++   + +K+G     ++ A+ W +     +  +
Sbjct: 115 EMILHYEGGVEAFVRHLDKSKTPILKDVIVIRGKKEGI---ELDLALWWNDSYHETMLCF 171

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH S  R +LTR +  Y E +    K  +S+  +D       +LSV + +
Sbjct: 172 TNNIPQRDGGTHLSAFRASLTRVMGGYIESSGAGKKEKVSVTGEDAREGLTCVLSVKVPD 231

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F+ QTK KLVS + +  VE+   +    +  ++P+EA +++  +IE +  R   RK R
Sbjct: 232 PKFSSQTKDKLVSSEVRPAVESLCSEGLATWFEEHPVEAKQIVAKIIEAASAREAARKAR 291

Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           +   RK+A+    LPGKLADC +     +ELFIVEGDSAGGSAKQARNR NQAVLPLRGK
Sbjct: 292 DLTRRKSALEISSLPGKLADCQERDPAKSELFIVEGDSAGGSAKQARNRENQAVLPLRGK 351

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVII 540
           ILNV  A  +++ ++  I  L+ ALG          + LRY K+I+
Sbjct: 352 ILNVERARFDRMLSSDLIGTLILALGTGIGRDDFNADKLRYHKIIL 397


>gi|6644317|gb|AAF21002.1|AF208251_1 DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 387

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 141/386 (36%), Positives = 213/386 (55%), Gaps = 16/386 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNA +D+L +T+ R   ++ Q +  G P +PL++        GT + F 
Sbjct: 1   SGGLHGVGVSVVNARADKLLLTMRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P P IF D   F    L K  +  ++L+  V      +++  E         F + GG+K
Sbjct: 60  PSPTIFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIK 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I  ++F   TE+ G     VE A+ W +     +  + NTI   +GGT
Sbjct: 112 AFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYWFTNTIPQGDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KL
Sbjct: 169 HLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
           VS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+  
Sbjct: 229 VSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDI 288

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 289 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 348

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED 532
           + ++Q++  L+ ALGC         D
Sbjct: 349 MISSQEVGTLITALGCGIGRDEYNPD 374


>gi|330896901|gb|AEC48370.1| gyrase B [Streptomyces viridis]
          Length = 380

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 127/382 (33%), Positives = 200/382 (52%), Gaps = 17/382 (4%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS ++ V V      ++Q +  G+P +PL + E   ++ GT +TF  DP I
Sbjct: 1   GVGVSVVNALSTKVAVEVKTDGYRWTQDYKLGVPTAPLARHEPT-DEHGTSVTFWADPDI 59

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA-----------EKYGIPEKEEFY 264
           F     +    L +  Q  A+L+  ++   + ++E A           ++    +  +++
Sbjct: 60  FETT-EYSFETLSRRFQEMAFLNKGLRIRLTDERESAKATSGADEAGADEKAEVKSVDYH 118

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++     +  +          +      ++E A+ W       + S+ N I 
Sbjct: 119 YEGGIVDFVKYLNSRKGDVVHPTVIDLEAEDKDKLLSLEVAMQWNSSYTEGVYSFANIIH 178

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G R ALT  I KYA   +   ++  ++  DD+      I+SV + EP+F G
Sbjct: 179 THEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISVKLSEPQFEG 238

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + + +  V+  + +    +L +NP EA  ++   I+ +  R+  RK R++ R+
Sbjct: 239 QTKTKLGNTEVKTFVQKVVYEHLADWLDRNPNEAADIIRKGIQAATARVAARKARDLTRR 298

Query: 442 TAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
             +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV 
Sbjct: 299 KGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPEYQAILPIRGKILNVE 358

Query: 501 SAGSEKIRNNQQIMDLVQALGC 522
            A  +KI  NQ+I  L+ A G 
Sbjct: 359 KARIDKILQNQEIQALISAFGT 380


>gi|146164139|gb|ABQ08734.1| DNA gyrase subunit beta [Aeromonas bivalvium]
 gi|146164141|gb|ABQ08735.1| DNA gyrase subunit beta [Aeromonas bivalvium]
          Length = 368

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 136/379 (35%), Positives = 208/379 (54%), Gaps = 15/379 (3%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++     +  GT + F P   
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSST 60

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 61  IFSDTL-FHYDILAKRLRELSFLNSGVSIRLEDERDGRE-------VHFCYEGGIKAFVE 112

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 113 YLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 169

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 170 FRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 229

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 230 VKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 289

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 290 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 349

Query: 511 QQIMDLVQALGCRTRSQYR 529
           Q++  L+ ALGC       
Sbjct: 350 QEVGTLITALGCGIGRDEY 368


>gi|19909583|dbj|BAB86987.1| DNA gyrase subunit B [Maricaulis maris]
          Length = 382

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 144/391 (36%), Positives = 205/391 (52%), Gaps = 15/391 (3%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFR 210
           GGLHGVG+SVVNALSD + +T+ R       +F RG     L+        ++GT + F 
Sbjct: 1   GGLHGVGVSVVNALSDWMDLTIWRNGKRHWMRFRRGDAEEDLKVMGDAEPGQKGTEVRFM 60

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F     F+   L    +  A+L+  VK     ++E          +   + GG+ 
Sbjct: 61  PSEETF-TMTEFNRETLQHRLRELAFLNSGVKITLRDERE-----AELYSDTMVYDGGVA 114

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGT-HRGTVEWAIAWCEENPEITSYCNTILTDEGGT 329
            ++     N++ I +       EK G      +EW  ++ E    +  + N I   +GGT
Sbjct: 115 AFVAHLDRNKTPIFTPPVLITGEKDGVAVEAALEWNDSYHE---NVLCFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R ALTR I  YA  +    K  +SI  DD       +LSV + +P+F+ QTK KL
Sbjct: 172 HLAGFRGALTRIINTYAASSGLASKAKVSISGDDAREGLTCVLSVKVPDPKFSSQTKDKL 231

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
           VS + +  VE A+ +    +  ++P EA  ++  +IE +  R   RK RE   RK+A+  
Sbjct: 232 VSSEVRPAVEGAVGEALAEWFEEHPTEAKMVVGKIIEAAAAREAARKARELTRRKSALEI 291

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +ELFIVEGDSAGGSAKQ R+R NQAVLPLRGKILNV  A  +K
Sbjct: 292 SSLPGKLADCQEKDPAKSELFIVEGDSAGGSAKQGRHRENQAVLPLRGKILNVERARFDK 351

Query: 507 IRNNQQIMDLVQALGCRT-RSQYREEDLRYE 536
           + +++Q+  L+ ALG    R Q   E LRY 
Sbjct: 352 MLSSEQVGTLITALGTGIGRDQINYEKLRYH 382


>gi|262090296|gb|ACY25089.1| DNA gyrase subunit B [Aeromonas veronii]
          Length = 378

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 144/390 (36%), Positives = 217/390 (55%), Gaps = 17/390 (4%)

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D 
Sbjct: 1   SVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPAIFSDT 59

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V      +++  E         F + GG+K +++   +N
Sbjct: 60  L-FHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------AHFCYEGGIKAFVEYLNQN 111

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G R AL
Sbjct: 112 KTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTAL 168

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 169 TRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAV 228

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
           E A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLAD
Sbjct: 229 EQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLAD 288

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 289 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGT 348

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDA 544
           L+ ALGC   R +Y  + LRY  +IIMTDA
Sbjct: 349 LITALGCGIGRDEYNPDKLRYHNIIIMTDA 378


>gi|19909551|dbj|BAB86971.1| DNA gyrase subunit B [Caulobacter segnis]
          Length = 399

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 141/408 (34%), Positives = 218/408 (53%), Gaps = 24/408 (5%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------- 199
           +Y++SGGLHGVG+SVVNALSD L + + R   +   +F RG  ++ L+            
Sbjct: 1   SYKVSGGLHGVGVSVVNALSDWLELLIHRNGKVHQMRFERGDAVTSLKVTGDSPVRQEGP 60

Query: 200 ---RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
                  GT +TF P    F     FD   L    +  A+L+  V   +   ++      
Sbjct: 61  KAGETLTGTEVTFFPSRDTFA-FIEFDRKTLEHRLRELAFLNSGVTIWFKDHRDA----- 114

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
            P +E+ ++ GG++ +++   + ++ +     + +  K       V+ A+ W +    ++
Sbjct: 115 EPWEEKLHYEGGIEAFVRHLDKAKTPLLKAPISVRGLKDKV---EVDLALWWNDSYHEQM 171

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH S  R ALTR I  YAE +    K  +++  +D       +LSV 
Sbjct: 172 LCFTNNIPQRDGGTHLSAFRAALTRIITNYAESSGILKKEKVNLGGEDAREGLTCVLSVK 231

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + +P+F+ QTK KLVS + +  VE  +++    +  ++P EA  ++  + E +  R   R
Sbjct: 232 VPDPKFSSQTKDKLVSSEVRPAVEGLVQEGLATWFEEHPNEARAIVSKIAEAAAAREAAR 291

Query: 434 KQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           K RE   RK+A+    LPGKLADCS+     +E+FIVEGDSAGGSAKQARNR NQAVLPL
Sbjct: 292 KARELTRRKSALDITSLPGKLADCSERDPAKSEIFIVEGDSAGGSAKQARNRDNQAVLPL 351

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
           RGKILNV  A  +K+ ++ QI  L+ ALG    R  +  + +RY K++
Sbjct: 352 RGKILNVERARFDKMLSSDQIGTLITALGAGIGRDDFNPDKVRYHKIV 399


>gi|194475602|gb|ACF74548.1| DNA gyrase subunit B [Duganella zoogloeoides]
          Length = 406

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 141/415 (33%), Positives = 223/415 (53%), Gaps = 28/415 (6%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL------------SP 192
            ++Y++SGGLHGVG+S VNALS  L +T+ R   +   +F+RG+P+            SP
Sbjct: 1   QNSYKVSGGLHGVGVSCVNALSKTLKLTIRRDGKVHFMEFARGVPVDRELEMRDGFAVSP 60

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
           ++      +KRGT + F  D  IFG+   F    L K  +  ++L+  V    S  +   
Sbjct: 61  IKVIGDT-DKRGTDVHFWADETIFGNV-EFHYEILAKRIRELSFLNNGVNIRLSDQR--- 115

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK--KGTHRGTVEWAIAWCE 310
                 +++ F F GG + +++   + ++++   +F    E+        +V+ ++ W +
Sbjct: 116 ----TGKEDIFAFEGGTRGFVEYINKAKTVLHPTVFQATGERMSDQNTNISVDVSMQWND 171

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
               ++  + N I   +GGTH +GLR A+TR I KY E  +   K  + I  DD+     
Sbjct: 172 AYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEEHEFAKKAKVEISGDDMREGLT 231

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            +LSV + EP+F+ QTK KLVS + +  VE  +      YL + P +A  +   ++E + 
Sbjct: 232 CVLSVKVPEPKFSSQTKDKLVSSEVRGPVEEIVAKTLADYLQEKPNDAKIICGKIVEAAR 291

Query: 428 ERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK R++ R+   +  L L  KLADC +     +EL+IVEGDSAGGSAKQ R+R  
Sbjct: 292 AREAARKARDLTRRKGVMDGLGLSAKLADCQEKDPALSELYIVEGDSAGGSAKQGRDRKF 351

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
           QA+LPLRGK+LNV  A  EK+ +++QI  L+  LG      ++  E LRY ++II
Sbjct: 352 QAILPLRGKVLNVEKARFEKMLSSEQITTLIATLGTSIGPDEFNVEKLRYHRIII 406


>gi|108755448|dbj|BAE95688.1| DNA gyrase B [Segniliparus rugosus]
          Length = 417

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 132/423 (31%), Positives = 211/423 (49%), Gaps = 33/423 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS +L V +      ++Q +    P   ++       + G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSYKLEVEIDVDGHHWTQAYDNAQPGPLVK--GAAVKRTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE-------------- 250
           T + F  DPKIF     +D   + +  Q  A+L+  +    +  +E              
Sbjct: 59  TTVRFWADPKIFETTR-YDFDTIARRLQEMAFLNKGLIITLTDLREGQIDASDEGEGVDT 117

Query: 251 ---------IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
                       K    ++ E+++PGGL  Y+      ++ I + I + + + +G     
Sbjct: 118 AELVRSEGDDEAKAPAVKRREYHYPGGLHDYVAHINRTKTAIHTSIVSFEGKGEGH---E 174

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISII 358
           VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++  ++ 
Sbjct: 175 VEIAMQWNSGYTESVYTFANTINTHEGGTHEEGFRAALTLTVNKYARDKKILKEKDKNLS 234

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+      ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP EA  +
Sbjct: 235 GDDVREGLSAVISVKLSEPQFEGQTKTKLGNTEIRSFVQKICNEELAHWFEANPSEAKVI 294

Query: 419 LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           +    + ++ R   +  R  V RK+      LPGKLADC       +E++IVEGDSAGGS
Sbjct: 295 VSKAQQAAQARDAAQNARALVRRKSVTDIGGLPGKLADCRSKDPSKSEVYIVEGDSAGGS 354

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AK  RN   QA+LP+RGKI+NV  A  +++  N ++  ++ A G     ++    LRY K
Sbjct: 355 AKSGRNSEFQAILPIRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDLAKLRYHK 414

Query: 538 VII 540
           +++
Sbjct: 415 IVL 417


>gi|291169121|gb|ADD81987.1| DNA gyrase subunit B [Sphaerotilus hippei]
          Length = 398

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 138/407 (33%), Positives = 217/407 (53%), Gaps = 27/407 (6%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKE 197
           +SGGLHGVG+S VN LS  L +TV R+  +   +F +GIP            +SP++   
Sbjct: 1   VSGGLHGVGVSCVNGLSKWLRLTVRREGQVHFMEFRQGIPQDRVIEQRDGFEISPMKISG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +  +KRGT + F PD  IF +   F    L K  +  ++L+  VK     ++   E    
Sbjct: 61  ET-DKRGTEVHFLPDETIFTNI-DFHYEILSKRLRELSFLNNGVKIRLVDERNNKEDN-- 116

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK--KGTHRGTVEWAIAWCEEN-PE 314
                F + GG+K +++   + + ++   IF  + +K         VE A+ W E     
Sbjct: 117 -----FAYAGGVKGFVEFVNKGKKVLHPNIFHARGDKISDNHTNVGVEVAMQWNESYNEN 171

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSV 372
           +  + N I   +GGTH +GLR A+TR + KY +  +   K  + I  +D+      ++SV
Sbjct: 172 VLCFTNNIPQRDGGTHLTGLRAAMTRVMNKYIDDHEIAKKAKVEISGEDMREGLACVVSV 231

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
            + EP+F+ QTK KLVS + +  VE+ +      +L++NPI+A  +   +++ +  R   
Sbjct: 232 KVPEPKFSSQTKDKLVSSEVRAPVEDIVGRLLTDWLLENPIDAKTICGKIVDAARARDAA 291

Query: 433 RKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           RK RE+ R+   +  + LPGKLADC +      E+++VEGDSAGGSAKQ R+R  QA+LP
Sbjct: 292 RKAREMTRRKGVLDGMGLPGKLADCQEKDPAQCEIYLVEGDSAGGSAKQGRDRKFQAILP 351

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538
           LRGKILNV  A  EK+  + +I+ L+ ALG         +D   +K+
Sbjct: 352 LRGKILNVEKARYEKLLASNEILTLITALGTGIGKGMGGDDFNPDKL 398


>gi|45736557|dbj|BAD13357.1| DNA gyrase subunit B [Leptospira meyeri]
          Length = 391

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 135/397 (34%), Positives = 215/397 (54%), Gaps = 11/397 (2%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS+ L V V ++  I++QK+ +GIP+SP+E K      RGT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSEYLEVEVHQKGKIYTQKYEKGIPVSPVEIKGDSSE-RGTIV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PD  IF     F    L    +  A+L+  +       +  +E   +   E F F G
Sbjct: 60  RFKPDATIFTTV-DFQFDILSARFRELAFLNKGLVLIIEDRRRGSEGESLLRNE-FQFSG 117

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEG 327
           G+ ++++   EN+  +   I   + +       +++++  + E    I  + N I  + G
Sbjct: 118 GIVSFVEHINENKHPMHKVIHFERNKDDVLAEISIQYSETYTEN---IFCFTNNINNNLG 174

Query: 328 GTHESGLRVALTRGIKKYAELT---QNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GTH  G R ALTR +  + +       K    +  +D+      ++S+ I +P+F  QTK
Sbjct: 175 GTHLEGFRAALTRTLNDFLKKDTTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTK 234

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
            KLV+ + +  ++    +    +  +NP    K+LE  I  ++ R   RK R+   RKT 
Sbjct: 235 EKLVNAEIKGIMQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTV 294

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADCS+     +EL++VEG SAGGSAKQ R+R+ QA+LPL+GKILNV  A 
Sbjct: 295 LEGGGLPGKLADCSEKDPAFSELYLVEGASAGGSAKQGRDRNTQAILPLKGKILNVEKAR 354

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            +KI ++++I  LV ALG      ++    +R  K++
Sbjct: 355 LDKILSSEEIRVLVSALGTGIGEDEFNINKIRNHKIM 391


>gi|37928124|pdb|1QZR|A Chain A, Crystal Structure Of The Atpase Region Of Saccharomyces
           Cerevisiae Topoisomerase Ii Bound To Icrf-187
           (Dexrazoxane)
 gi|37928125|pdb|1QZR|B Chain B, Crystal Structure Of The Atpase Region Of Saccharomyces
           Cerevisiae Topoisomerase Ii Bound To Icrf-187
           (Dexrazoxane)
          Length = 418

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 87/413 (21%), Positives = 157/413 (38%), Gaps = 41/413 (9%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE---------------------- 71
           +    SASD Y     + +  LE +  RP  YIG  +                       
Sbjct: 7   STEPVSASDKY-----QKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTI 61

Query: 72  -KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKS 128
              L  +F E++ NA D  +       I+V++      + V ++G+GIP+E H K  N  
Sbjct: 62  VPGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNK-ENIY 120

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN--TIFSQKFSR 186
             E+I   L     +D+   +++GG +G G  + N  S E  +  A  N    + QK+  
Sbjct: 121 IPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWEN 180

Query: 187 GIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
            + +    K    +     T++TF+PD   F      D   L  M +    ++G V+   
Sbjct: 181 NMSICHPPKITSYKKGPSYTKVTFKPDLTRF-GMKELDNDILGVMRRRVYDINGSVRDIN 239

Query: 246 SCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
                 + K    +     +   L+   Q          S+I T   E+        E A
Sbjct: 240 VYLNGKSLKIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYER---INNRWEVA 296

Query: 306 IAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
            A  + + +  S+ N+I T  GGTH + +       +KK +E+ + K+  S+ S  +  +
Sbjct: 297 FAVSDISFQQISFVNSIATTMGGTHVNYITDQ---IVKKISEILKKKKKKSVKSFQIKNN 353

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
               ++  I  P F  QTK +L +          +   + + +++  +     
Sbjct: 354 MFIFINCLIENPAFTSQTKEQLTTRVKDFGSRCEIPLEYINKIMKTDLATRMF 406


>gi|18147173|dbj|BAB83067.1| DNA gyrase subunit B [Alcanivorax sp. OM-1]
          Length = 379

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 139/385 (36%), Positives = 206/385 (53%), Gaps = 17/385 (4%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS+EL +T+ R   +  Q ++ G+P  PLE      +  GT + FRP 
Sbjct: 1   GLHGVGVSVVNALSEELKLTIRRNGQVHEQIYNHGVPAKPLEVVG-TTDSSGTAVHFRPS 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P+ F +   F    L K  +  ++L+  V+     ++   E       + F + GGL  +
Sbjct: 60  PETFSNI-KFHYDILAKRLRELSFLNSGVRIHLMDERSGDE-------DVFEYEGGLSAF 111

Query: 273 LQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +     N++ ++       + E+ G     VE A+ W +     I  + N I   +GGTH
Sbjct: 112 VSYLNTNKTPLNQVFHFNYEREEDGI---AVEVAMQWNDSYQENIFCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  Y +      K   S   DD       ++SV + +P+F+ QTK KLV
Sbjct: 169 LAGFRAALTRTLNSYMDKEGFLKKEKASPSGDDAREGLTAVISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKL 447
           S + +  VE  + D F  YL++NP EA  +++ +I+ +  R   RK      RK A+   
Sbjct: 229 SSEVKSAVEQTMGDLFQDYLLENPGEARSIVQKIIDAARARDAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC Q     +EL+IVEGDSAGGSAKQ R+R NQA+LPL+GKILNV  A  +K+
Sbjct: 289 GLPGKLADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKM 348

Query: 508 RNNQQIMDLVQALGCRTRSQYREED 532
            ++Q++  L+ ALGC         +
Sbjct: 349 LSSQEVGTLITALGCGIGRDEYNIE 373


>gi|294963302|gb|ADF50138.1| DNA gyrase subunit B [Bacillus pumilus]
          Length = 365

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 131/372 (35%), Positives = 198/372 (53%), Gaps = 13/372 (3%)

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  L VTV R   I  Q+F RG+P+  LE   +  +  GT   F PD +IF +   
Sbjct: 1   VNALSTTLDVTVYRDGKIHYQQFKRGVPVGDLEIIGET-DVTGTTTHFVPDTEIFTETIE 59

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L    +  A+L+  V       +E  E+        + + GG+K+Y++    ++ 
Sbjct: 60  FDYDTLANRVRELAFLTKGVNIVIEDLREGKERRNE-----YCYEGGIKSYVEHLNRSKE 114

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
           ++  E    + EK G    TVE A+ + +     I S+ N I T EGGTHE+G +  LTR
Sbjct: 115 VVHEEPVYIEGEKDGI---TVEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGLTR 171

Query: 341 GIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  YA      +    ++  +D+      I+S+   +P+F GQTKTKL + +A+   ++
Sbjct: 172 VINDYARKNGVFKDGDSNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDS 231

Query: 399 ALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
              +  + +L++NP  A K++E  V+        ++ +    RK+A+    LPGKLADCS
Sbjct: 232 LFSEALEKFLLENPDAAKKIVEKGVMAARARMAAKKARELTRRKSALEVSSLPGKLADCS 291

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  ++
Sbjct: 292 SKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMI 351

Query: 518 QALGCRTRSQYR 529
            ALG      + 
Sbjct: 352 TALGTGIGEDFN 363


>gi|323146972|gb|ADX32779.1| DNA gyrase B subunit [endophytic bacterium 13(2011)]
 gi|323146974|gb|ADX32780.1| DNA gyrase B subunit [endophytic bacterium 14(2011)]
 gi|323146994|gb|ADX32790.1| DNA gyrase B subunit [endophytic bacterium 23(2011)]
          Length = 232

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 84/244 (34%), Positives = 129/244 (52%), Gaps = 27/244 (11%)

Query: 78  FSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIIL 134
             EV+DN++DE +AGY N I+V +  +  +++ DNGRG+P          P +S  EI++
Sbjct: 1   VFEVLDNSIDEALAGYCNDIQVIIHADNSISITDNGRGVPTGLKMDDKHEPKRSAAEIVM 60

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP----- 189
           T LHAGGKFD ++Y++SGGLHGVG+S VNALS  L +TV R       +F RG+P     
Sbjct: 61  TELHAGGKFDQNSYKVSGGLHGVGVSCVNALSAWLRLTVRRDGKKHFMEFHRGVPQNRVI 120

Query: 190 -------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
                  +SP++   +  N RGT + F  D  IFG+   +    L K  +  ++L+  V+
Sbjct: 121 EEIGGIAVSPIQVVGETEN-RGTEVHFMADETIFGN-VEYHYDILAKRIRELSFLNNGVR 178

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
              +  +   E         F F GG+K +++   + +S++   IF    EK G     V
Sbjct: 179 IRLTDQRSGKEDD-------FAFVGGVKGFVEYINKTKSVLHPTIFHVSGEKDGV---GV 228

Query: 303 EWAI 306
           E A+
Sbjct: 229 EVAM 232


>gi|938029|dbj|BAA05969.1| DNA gyrase subunit B [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
          Length = 104

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 58/102 (56%), Positives = 72/102 (70%), Gaps = 2/102 (1%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
             YD S+I++LEGLE VR RPGMYIG TD K LHHL  E++DNA+DE +AGY   I+V L
Sbjct: 5   KKYDESAIQVLEGLEAVRKRPGMYIGSTDNKGLHHLVWEIVDNAIDEALAGYCTQIDVIL 64

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143
           + +  +TV+DNGRGIP   H     K T E+I + LHAGGKF
Sbjct: 65  EKDNSITVIDNGRGIPTGMHK--TGKPTPEVIFSVLHAGGKF 104


>gi|23451187|gb|AAN32698.1| DNA gyrase subunit B [Aeromonas popoffii]
          Length = 372

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 136/382 (35%), Positives = 208/382 (54%), Gaps = 15/382 (3%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++     +  GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPT 60

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   +    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 61  IFTDTL-YHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVE 112

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F    E+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 113 YLNQNKTPIHPKVFHFSIEQDGI---GVEVAMQWNDAYQEGVHCFTNNIPQRDGGTHLVG 169

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 170 FRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 229

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 230 VKTAVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 289

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A   K+ ++
Sbjct: 290 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFXKMISS 349

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 350 QEVGTLITALGCGIGRDEYNPD 371


>gi|83683056|emb|CAJ47372.1| DNA gyrase subunit B [Aeromonas encheleia]
          Length = 372

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 136/382 (35%), Positives = 210/382 (54%), Gaps = 15/382 (3%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++     +  G+ + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGSEVRFWPSPT 60

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   +    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 61  IFTDTL-YHYEILAKRLRELSFLNSGVSIRLEDERDGRE-------MHFCYEGGIKAFVE 112

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 113 YLNQNKTPIHPKVFHFSTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 169

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 170 FRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 229

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 230 VKTAVEQAMGEKLGEFLLENPSDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 289

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 290 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 349

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 350 QEVGTLITALGCGIGRDEYNPD 371


>gi|19909575|dbj|BAB86983.1| DNA gyrase subunit B [Caulobacter henricii]
          Length = 402

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 141/411 (34%), Positives = 217/411 (52%), Gaps = 24/411 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV----- 199
            ++Y++SGGLHGVG+SVVNALSD L + + R    +  +F RG  ++ L +         
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSDWLELKIHRNGHSYQMRFERGDAVTSLAQTGDSPVRAD 60

Query: 200 -----RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
                    GT +TF P    F     FD   L    +  A+L+  V   +   ++ A  
Sbjct: 61  GPKAGTTLTGTEVTFFPSKDTFA-FIDFDRKTLEHRLRELAFLNSGVTIYFRDLRDAA-- 117

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313
              P +E+ ++ GG++ +++   + ++ +       +  K       V+ A+ W +    
Sbjct: 118 ---PWEEKLHYEGGIEAFVRHLDKAKTPLLKMPIVIRGRKDKV---EVDLALWWNDSYHE 171

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
            +  + N I   +GGTH S  R ALTR I  YAE +    K  +++  +D       +LS
Sbjct: 172 HMLCFTNNIPQRDGGTHLSAFRGALTRIITNYAESSGITKKEKVNVGGEDAREGLTCVLS 231

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V + +P+F+ QTK KLVS + +  VE  +++    +  ++P EA  ++  + E +  R  
Sbjct: 232 VKVPDPKFSSQTKDKLVSSEVRPAVEGLVQEGLATWFEEHPNEAKAIVSKIAEAAAAREA 291

Query: 432 RRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            RK RE   RK+A+    LPGKLADCS+     +E+FIVEGDSAGGSAKQARNR NQAVL
Sbjct: 292 ARKARELTRRKSALDITSLPGKLADCSERDPAKSEIFIVEGDSAGGSAKQARNRDNQAVL 351

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVII 540
           PLRGKILNV  A  +K+ ++ QI  L+ ALG          + +RY K+++
Sbjct: 352 PLRGKILNVERARFDKMLSSDQIGTLITALGAGIGRDDFNADKVRYHKIVL 402


>gi|319958736|gb|ADV90538.1| DNA gyrase subunit B [Bacillus axarquiensis]
          Length = 366

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 133/375 (35%), Positives = 203/375 (54%), Gaps = 13/375 (3%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LS EL VTV R   I  Q ++RG+P+S LE   +  +  GT   F PDP+IF +   ++ 
Sbjct: 1   LSTELDVTVHRDGKIHRQVYNRGVPVSDLEVIGET-DHTGTTTHFVPDPEIFTETTEYEY 59

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             L    +  A+L+  V       +E  E+        +++ GG+K+Y++    ++ ++ 
Sbjct: 60  DLLANRVRELAFLTKGVNITIEDKREGQERKNE-----YHYEGGIKSYVEYLNRSKEVVH 114

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
            E    + EK G    TVE A+ + +     I S+ N I T EGGTHE+G +  LTR I 
Sbjct: 115 EEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVIN 171

Query: 344 KYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            YA      +    ++  DD+      I+S+   +P+F GQTKTKL + +A+   +    
Sbjct: 172 DYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFS 231

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNI 460
              + ++++NP  A K+++  +  +  R+  +K RE   RK+A+    LPGKLADCS   
Sbjct: 232 AALETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKD 291

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  ++ AL
Sbjct: 292 PSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITAL 351

Query: 521 GCRTRSQYREEDLRY 535
           G      +  E  RY
Sbjct: 352 GTGIGEDFNLEKARY 366


>gi|148971305|gb|ABR20190.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 440

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 144/446 (32%), Positives = 213/446 (47%), Gaps = 27/446 (6%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT-IFSQKFSRGIP 189
           E+I+T LHAGGKFD   Y+ SGGLHGVG+SVV AL+  L   V R+    F+  + +G  
Sbjct: 1   EVIMTVLHAGGKFDGEVYDYSGGLHGVGVSVVCALASRLEAQVWRETEGSFTIAYEQGKL 60

Query: 190 LSP-LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
           + P  ++     +  GTRI F PDP+IFGD    D   +L+  +SKAYL   ++      
Sbjct: 61  VQPLRKRPGSKAHPHGTRIKFWPDPEIFGDAV-VDFDAVLERCRSKAYLIPGLRVDVIDH 119

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH---------- 298
           +        P K  +    GL   L     N       I    T ++             
Sbjct: 120 R-----LDPPVKHTYTSRNGLVDLLGHLANNPLHKPIIIEGEGTYEETVQVLGDDGIRAQ 174

Query: 299 ----RGTVEWAIAWCEENPEITSY-CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR 353
                G +E A+ W            N + T  GGTH +GL  AL+R + K AE ++ K+
Sbjct: 175 NMERTGRLELALVWTGGYETQFQLAVNQVTTPRGGTHLTGLNQALSRVVVKAAEGSRVKK 234

Query: 354 AISIISDDL--MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           A     +    M     ++ + I EP+F GQ K +L +  A + V   +      +    
Sbjct: 235 AKDPSPNKDDVMEGLCLVMHLQIPEPQFNGQAKEELGTPQAHQLVYQIVARELAKWFETA 294

Query: 412 PIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK--LRLPGKLADCSQNIAHGTELFIV 469
           P    +++   +  +       ++     +   R   L LP KL+D  ++    +EL IV
Sbjct: 295 PRTHVRVVLEKVMAAARARDAARRSRDMARKKDRNQVLALPAKLSDSYRHYPEESELLIV 354

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           EGDSA G AK  R++  QAVLP+RGKILN A A +  + +N ++  +  ALG +   +  
Sbjct: 355 EGDSAAGPAKAGRDQRFQAVLPIRGKILNAARASAHNLASNAEVTAIFSALGLQPGPKCD 414

Query: 530 EEDLRYEKVIIMTDADVDGAHIASLL 555
            E  RY +V+IMTDADVDG+HI +LL
Sbjct: 415 PEQRRYTRVVIMTDADVDGSHIRTLL 440


>gi|212659898|gb|ACJ37007.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 264

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 91/275 (33%), Positives = 148/275 (53%), Gaps = 13/275 (4%)

Query: 97  IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156
           I V +  +G ++V DNGRGIPV+ H K    S  E+ILT LHAGGKFD+++Y++SGGLHG
Sbjct: 2   ILVKIHVDGSVSVSDNGRGIPVDIH-KEEGVSAAEVILTVLHAGGKFDDNSYKVSGGLHG 60

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+SVVNALS+ L + + R    + Q++  G P  PL++  +V  KRGT + F+P  +IF
Sbjct: 61  VGVSVVNALSERLWLDIWRDGYHYQQEYVLGDPQYPLKQL-EVSAKRGTTLRFKPAKEIF 119

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            D   F    L K  +  ++L+  +K     ++          +++F++ GG++++++  
Sbjct: 120 SD-VEFHYENLAKRLRELSFLNSGLKVSLIDERG------EGRRDDFHYEGGIRSFVEHL 172

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            + ++ + S + +   E  G     V+ A+ W +     +  + N I   +GGTH +G R
Sbjct: 173 AQLKTPLHSNVISVTGEHNGI---VVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFR 229

Query: 336 VALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
            ALTR +  Y E     R   I      +    I 
Sbjct: 230 AALTRTLGNYIEQNGIARQAKITFSGDDMREGMIA 264


>gi|294963292|gb|ADF50133.1| DNA gyrase subunit B [Bacillus pumilus]
 gi|294963308|gb|ADF50141.1| DNA gyrase subunit B [Bacillus pumilus]
          Length = 365

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 130/371 (35%), Positives = 197/371 (53%), Gaps = 13/371 (3%)

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  L VTV R   I  Q+F RG+P   LE   +  +  GT   F PDP+IF +   
Sbjct: 1   VNALSTTLDVTVYRDGKIHYQQFKRGVPAGDLEIIGET-DVTGTTTHFVPDPEIFTETIE 59

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L    +  A+L+  V       +E  E+        + + GG+K+Y++    ++ 
Sbjct: 60  FDYDTLANRVRELAFLTKGVNIIIEDLREGKERRNE-----YCYEGGIKSYVEHLNRSKE 114

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340
           ++  E    + EK G    T+E A+ + +       S+ N I T EGGTHE+G +  LTR
Sbjct: 115 VVHEEPVYIEGEKDGI---TIEVALQYNDSYSSNIYSFANNINTYEGGTHEAGFKTGLTR 171

Query: 341 GIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  YA      +    ++  +D+      I+S+   +P+F GQTKTKL + +A+   ++
Sbjct: 172 VINDYARKNGVFKDGDSNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDS 231

Query: 399 ALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
              +  + +L++NP  A K++E  V+        ++ +    RK+A+    LPGKLADCS
Sbjct: 232 LFSEALEKFLLENPDAAKKIVEKGVMAARARMAAKKARELTRRKSALEVSSLPGKLADCS 291

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  ++
Sbjct: 292 SKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMI 351

Query: 518 QALGCRTRSQY 528
            ALG      +
Sbjct: 352 TALGTGIGEDF 362


>gi|321401426|gb|ADW83175.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|321401432|gb|ADW83178.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
          Length = 355

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 139/359 (38%), Positives = 198/359 (55%), Gaps = 10/359 (2%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA-RQNTIFSQKFSRGIPLSPLEKKE 197
           AGGKFD  +Y++SGGLHGVG+SVVNALS+ L  TV      I+ Q++ +G  L P+++  
Sbjct: 2   AGGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGKIYEQEYEKGKALYPVKQIG 61

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +    RGT +TF PDP IF     +    L    +  ++L+  +   ++  +E  +K G 
Sbjct: 62  ETTK-RGTIVTFYPDPSIFTQTIEYSYDTLSARMRELSFLNKGITITFTDKRE-KDKDGN 119

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
              E F+   GLK Y++    NR      I    +         VE A+ +       I 
Sbjct: 120 FVSEIFHSTEGLKEYIRYLDGNRE---PIIAHVISMDNDKGEIPVEVALIYNTSYTENIF 176

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFI 374
           SY N I T EGGTH  G R  LTR +KKYA+ +    K    I  DD       I+SV +
Sbjct: 177 SYVNNINTHEGGTHLQGFRTGLTRSLKKYADSSGMLDKLKFEISGDDFREGLTAIISVKV 236

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP+F GQTKTKL + +    V  A+ D  ++YL +NP +A  +++ VI  ++ R   +K
Sbjct: 237 AEPQFEGQTKTKLGNREVVSPVSQAVGDMIENYLEENPNDARIIVQKVILAAQARHAAKK 296

Query: 435 QREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
            RE+  RKT +    LPGKL+DCS+      E+F+VEGDSAGG+AKQ R+R+ QA+LPL
Sbjct: 297 AREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVFLVEGDSAGGTAKQGRDRAFQAILPL 355


>gi|330896978|gb|AEC48374.1| gyrase B [Streptomyces macrosporeus]
          Length = 397

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 131/399 (32%), Positives = 203/399 (50%), Gaps = 17/399 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  + V V      ++Q++  G+P +PL + E      GT +TF
Sbjct: 1   VSGGLHGVGVSVVNALSTRVAVEVKTDGHRWTQEYKLGVPTAPLARHEATEE-TGTSVTF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI-----------AEKYGIP 258
             D  IF     +    L +  Q  A+L+  +K   + ++E             ++    
Sbjct: 60  WADGDIFETT-DYSFETLSRRFQEMAFLNKGLKINLTDERESAKATAGADEAGEDEKHEV 118

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +   +++ GG+  +++     +  +          +      ++E A+ W       + S
Sbjct: 119 KSVSYHYEGGIVDFVKYLNSRKGELVHPTVIDLEAEDRDRHLSLEVAMQWNGGYTEGVYS 178

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIR 375
           + N I T EGGTHE G R ALT  I KYA   +    +  ++  DD+      I+SV + 
Sbjct: 179 FANIIHTHEGGTHEEGFRAALTSLINKYARDKKLLRDKDDNLTGDDIREGLTAIISVKLA 238

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           EP+F GQTKTKL + + +  V+  + +  + +L +NP EA  ++   I  +  R+  RK 
Sbjct: 239 EPQFEGQTKTKLGNTEVKTFVQKVVYEHLNDWLDRNPNEAADIIRKGIAAATARVAARKA 298

Query: 436 REVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           R++ R+  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RG
Sbjct: 299 RDLTRRKGLLESASLPGKLSDCQSNDPVKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRG 358

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           KILNV  A  ++I  NQ+I  ++ A G      +  E L
Sbjct: 359 KILNVEKARIDRILQNQEIQAMISAFGTGVHEDFDIERL 397


>gi|254055415|gb|ACT64307.1| GryB [Streptomyces cinnamonensis]
          Length = 385

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 124/387 (32%), Positives = 200/387 (51%), Gaps = 19/387 (4%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS +L V + R    ++Q +  G+P +PL K E+V    GT +TF  DP +
Sbjct: 1   GVGVSVVNALSTKLAVDIKRDGYRWTQDYKLGVPTAPLAKHERVEE-SGTTVTFWADPDV 59

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE-------------IAEKYGIPEKEE 262
           F     +    L +  Q  A+L+  +    + +++               ++        
Sbjct: 60  FETT-EYSFETLARRFQEMAFLNKGLTIKLTDERDSAKATAGADSAEATDDEAAEARTVT 118

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           +++ GG+  +++     +  +          +      +VE A+ W  +    + S+ NT
Sbjct: 119 YHYEGGIVDFVKYLNSRKGEVVHPTVIDVEAEDKERLLSVEIAMQWNSQYTEGVYSFANT 178

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEF 379
           I T EGGTHE G R ALT  + +YA   +   ++  ++  +D+      I+SV + EP+F
Sbjct: 179 IHTHEGGTHEEGFRAALTGLVNRYAREKKLLREKDDNLTGEDIREGLTAIISVKLGEPQF 238

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN 439
            GQTKTKL + +A+  V+  + +    +  +NP EA  ++   I+ +  R+  RK R++ 
Sbjct: 239 EGQTKTKLGNTEAKTFVQKVVHEHLTDWFDRNPNEAADIIRKGIQAATARVAARKARDLT 298

Query: 440 RKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
           R+  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  R+   QA+LP+RGKILN
Sbjct: 299 RRKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRDPMYQAILPIRGKILN 358

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTR 525
           V  A  +KI +NQ++  L+ A G    
Sbjct: 359 VEKARVDKILHNQEVQALISAFGTGVH 385


>gi|311788328|gb|ADQ12751.1| GyrB [Micromonospora fulviviridis]
          Length = 367

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 115/371 (30%), Positives = 194/371 (52%), Gaps = 9/371 (2%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS  + V + +  +++ Q++    P    +   +   + G+ ++F PDP 
Sbjct: 1   HGVGVSVVNALSTRMAVEIHKDGSVWRQQYHNSKPTPLEK--GETTGRTGSAVSFWPDPD 58

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           +F     FD   + +  Q  A+L+  ++     ++   E+ G   +  FY+ GG+  +++
Sbjct: 59  VFETV-DFDFQTIYRRLQEMAFLNRALRIHLLDERVAEEEDGRQREVTFYYEGGIADFVR 117

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               +++ I   +     E++G    +VE A+ W E     + ++ NTI T EGGTHE G
Sbjct: 118 HLNASKNPIHKTVVEFGAEEEG---MSVEIAMQWNESYGESVYTFANTINTHEGGTHEEG 174

Query: 334 LRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
            R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQTKTKL +   
Sbjct: 175 FRSALTSVVNRYGAEKKLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPV 234

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           +  V+    +    +  +NP EA  +++            ++ ++   RK+ +    +PG
Sbjct: 235 KSFVQRVCNEWLVDWFDRNPAEAKMIIQKASQAARARIAAQQARKLARRKSLLESGSMPG 294

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N 
Sbjct: 295 KLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNN 354

Query: 512 QIMDLVQALGC 522
           ++  L+ ALG 
Sbjct: 355 EVQALITALGT 365


>gi|294963306|gb|ADF50140.1| DNA gyrase subunit B [Bacillus pumilus]
 gi|294963320|gb|ADF50147.1| DNA gyrase subunit B [Bacillus pumilus]
          Length = 365

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 131/371 (35%), Positives = 198/371 (53%), Gaps = 13/371 (3%)

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  L VTV R   I  Q+F RG+P   LE   +  +  GT   F PDP+IF +   
Sbjct: 1   VNALSTTLDVTVYRDGKIHYQQFKRGVPAGDLEIIGET-DVTGTTTHFVPDPEIFTETIE 59

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L    +  A+L+  V       +E  E+        + + GG+K+Y++    ++ 
Sbjct: 60  FDYDTLANRVRELAFLTKGVNIIIEDLREGKERRNE-----YCYEGGIKSYVEHLNRSKE 114

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
           ++  E    + EK G    T+E A+ + +     I S+ N I T EGGTHE+G +  LTR
Sbjct: 115 VVHEEPVYIEGEKDGI---TIEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGLTR 171

Query: 341 GIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  YA      +    ++  +D+      I+S+   +P+F GQTKTKL + +A+   ++
Sbjct: 172 VINDYARKNGVFKDGDSNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDS 231

Query: 399 ALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
              +  + +L++NP  A K++E  V+        ++ +    RK+A+    LPGKLADCS
Sbjct: 232 LFSEALEKFLLENPDAAKKIVEKGVMAARARMAAKKARELTRRKSALEVSSLPGKLADCS 291

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  ++
Sbjct: 292 SKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMI 351

Query: 518 QALGCRTRSQY 528
            ALG      +
Sbjct: 352 TALGTGIGEDF 362


>gi|22761999|dbj|BAC11786.1| gyrase B [Helicobacter pylori]
          Length = 389

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 144/399 (36%), Positives = 222/399 (55%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NK 202
           N TY++SGGLHGVG+SVVNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +   +
Sbjct: 1   NDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKE 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT I F PD  +      F A  L K  +  AYL+  +K  +  +K          +E 
Sbjct: 61  SGTTIEFFPDESVMEVV-EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLQET 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
           +++  GLK +++   + + L++  I     +++      V  A A  + N    S+ N I
Sbjct: 113 YFYEDGLKQFVKDSAK-KELLTPIISFKSMDEETRTSIEVALAYAD-DYNENTLSFVNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T EGGTHE+G ++ L++ I +Y +     +    IS+D+    + ++S+ + EP F GQ
Sbjct: 171 KTSEGGTHETGFKMGLSKAILQYIDNNIKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TK+KL S  A+  V   + D    +L +NP EA  +    +  ++ R   +K RE   +K
Sbjct: 231 TKSKLGSSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKK 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC       +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  
Sbjct: 291 DNLSVGTLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +   KI  +++I +++ A GC  +  +  E LRY K+II
Sbjct: 351 SHLSKILKSEEIKNMITAFGCGIQESFEIEKLRYHKIII 389


>gi|3021628|dbj|BAA25334.1| DNA gyrase B subunit [Pseudomonas putida]
          Length = 381

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 140/393 (35%), Positives = 209/393 (53%), Gaps = 17/393 (4%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P  P++         GT+I F+ 
Sbjct: 1   GGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQEPMKIVGD-SETTGTQIHFKA 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SSETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++         + G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTPVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447
           S + +  VE  +   F  +L++ P EA  ++  +I+ +  R   RK R    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFSDFLLEKPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+
Sbjct: 289 GLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKM 348

Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 349 ISSQEVGTLITALGCGIGREEYNIDKLRYHHII 381


>gi|157073783|dbj|BAF79890.1| gyrase B [Methylobacterium extorquens]
          Length = 399

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 139/408 (34%), Positives = 216/408 (52%), Gaps = 21/408 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS  L + + R       +F  G  ++PLE      ++RG
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSTSLKLRIWRAGKEHRMEFRHGDAVAPLEVVGPAGDRRG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF P  + F     FD   L K  +  A+L+  V+   +  +    K      EE  
Sbjct: 61  TEVTFLPSTETF-TMTEFDYPTLEKRLRELAFLNSGVRIVVTDARHAEHKR-----EELC 114

Query: 265 FPGGLKTYLQTKLENRSLIS--SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           + GG++ +++    +R  +   ++  T   E+ G     VE A+ W +     +  + N 
Sbjct: 115 YEGGVEAFVRYLDRSRKPVDGMTKPVTVLGERDGI---RVEVALWWNDSFNETVLPFTNN 171

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R ALTR +  YAE +   +   +    DD       ++SV + +P+F
Sbjct: 172 IPQRDGGTHMAGFRAALTRQLTGYAESSGIAKREKVSLTGDDCREGLTAVISVQVPDPKF 231

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK-LLEWVIERSEERLRRRKQREV 438
           + QTK KLVS + +  VEN L +    +L +NP +A   + + V+  +     R+ +  +
Sbjct: 232 SSQTKDKLVSSEVRPAVENILNEGLSTWLEENPAQAKSVMGKVVLAAAAREAARKARETI 291

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +      EL +VEGDSAGGSAKQ R+R+ QAVLPLRGKILN
Sbjct: 292 TRKGALDIASLPGKLADCQERDPSKCELLLVEGDSAGGSAKQGRDRTFQAVLPLRGKILN 351

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVII 540
           V    ++++ ++ +I  L+ ALG         R  +  + LRY ++II
Sbjct: 352 VERVRADRMLSSAEIGTLITALGAGIGRSSTDREGFNPDKLRYHRIII 399


>gi|22450176|dbj|BAC10605.1| DNA gyrase B subunit [Shewanella schlegeliana]
 gi|22450178|dbj|BAC10606.1| DNA gyrase B subunit [Shewanella schlegeliana]
          Length = 377

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 136/385 (35%), Positives = 207/385 (53%), Gaps = 15/385 (3%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS +L +T+ R   ++ Q ++ G+P +P+    +     GT I F P
Sbjct: 1   GGLHGVGVSVVNALSSKLQMTIRRDGKVYEQFYTHGVPDAPITAIGEATK-TGTEIRFWP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F D   F    L K  +  ++L+  V      +++  +       E F + GG+  
Sbjct: 60  SAETFSDVL-FHFDILAKRVRELSFLNSGVGIRLVDERDNRD-------EFFKYEGGISA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++     N++ ++ E+F    E++     TVE A+ W +     I  + N I   +GGTH
Sbjct: 112 FVDYLNVNKTPVNKEVFHFIQERED--GITVEVAMQWNDGFQENIFCFTNNIPQRDGGTH 169

Query: 331 ESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  Y E      K   +   DD       ++SV + +P+F+ QTK KLV
Sbjct: 170 LAGFRGALTRNLNNYMEREGFNKKGKTAATGDDAREGLTAVISVKVPDPKFSSQTKDKLV 229

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447
           S + +  VE  + +    YL+++P EA  ++  +I+ +  R   RK R    RK A+   
Sbjct: 230 SSEVKSAVEQTMGEQLGDYLMEHPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLG 289

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+
Sbjct: 290 GLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 349

Query: 508 RNNQQIMDLVQALGCRTRSQYREED 532
            ++Q++  L+ ALGC         D
Sbjct: 350 LSSQEVATLITALGCGIGRDEYNPD 374


>gi|56675182|emb|CAI34893.1| DNA gyrase subunit B [Aeromonas sp. V97]
 gi|56675184|emb|CAI34894.1| DNA gyrase subunit B [Aeromonas sp. F507C]
 gi|56675186|emb|CAI34895.1| DNA gyrase subunit B [Aeromonas sp. V30]
 gi|56675188|emb|CAI34896.1| DNA gyrase subunit B [Aeromonas sp. V39]
 gi|56675190|emb|CAI34897.1| DNA gyrase subunit B [Aeromonas sp. V83]
 gi|66474565|gb|AAY46852.1| GyrB [Aeromonas caviae]
 gi|66474567|gb|AAY46853.1| GyrB [Aeromonas caviae]
 gi|66474569|gb|AAY46854.1| GyrB [Aeromonas caviae]
 gi|66474571|gb|AAY46855.1| GyrB [Aeromonas caviae]
 gi|95108301|emb|CAK18172.1| DNA gyrase subunit B [Aeromonas hydrophila subsp. anaerogenes]
          Length = 371

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 138/382 (36%), Positives = 209/382 (54%), Gaps = 16/382 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 169 FRTALTRTLNNYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 229 VKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 348

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 349 QEVGTLITALGCGIGRDEYNPD 370


>gi|323146980|gb|ADX32783.1| DNA gyrase B subunit [Burkholderia sp. 4682(2011)]
 gi|323146982|gb|ADX32784.1| DNA gyrase B subunit [Burkholderia sp. 4683(2011)]
          Length = 234

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 81/246 (32%), Positives = 124/246 (50%), Gaps = 27/246 (10%)

Query: 78  FSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIIL 134
             EV+DN++DE +AGY + I V +  +  ++V DNGRG+P          P +S  EI++
Sbjct: 1   VFEVLDNSIDEALAGYCDDIHVVIHADNSISVTDNGRGVPTGLKRDDKHDPKRSAAEIVM 60

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF---------- 184
           T LHAGGKFD ++Y++SGGLHGVG+S VNALS+ L +TV R       +F          
Sbjct: 61  TELHAGGKFDQNSYKVSGGLHGVGVSCVNALSEWLRLTVRRDGKKHFMEFARGVVQNREI 120

Query: 185 --SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
               G+  SP+       N RGT + F  D  IFG+   F    L K  +  ++L+  V+
Sbjct: 121 LEEDGVQYSPMPVVGDTEN-RGTEVHFLADQTIFGN-VEFHYDILAKRMRELSFLNNGVR 178

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
              +  +   E         F F GG+K +++   + + ++   +F    E+      TV
Sbjct: 179 IRLTDQRTGKEDD-------FAFAGGVKGFVEYINKAKQVLHPNVFHAVGERDNV---TV 228

Query: 303 EWAIAW 308
           E A+ W
Sbjct: 229 EVAMQW 234


>gi|62085692|gb|AAX63238.1| DNA gyrase subunit B [Gordonia terrae]
          Length = 424

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 139/429 (32%), Positives = 212/429 (49%), Gaps = 39/429 (9%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+  Y +SGGLHGVGISVVNALS ++ + +      + Q ++   P    +     
Sbjct: 1   GGKFDSDAYAVSGGLHGVGISVVNALSTKVELEIQNDGFHWEQTYNYAKPGVLEK--GSP 58

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------- 249
             K GT + F PDP+IF +   F+A  + +  Q  A+L+  +    +  +          
Sbjct: 59  TRKTGTTVRFWPDPEIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAIEAPGDA 118

Query: 250 -------------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
                              E A     P+   +++P GL  Y++     +  I + +   
Sbjct: 119 DGDEESTLTEAAEEIKSAEEKAAAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHTTVIGY 178

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             +  G     VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   
Sbjct: 179 TGQGTGH---EVEVAMQWNATYSESVHTFANTINTHEGGTHEEGFRAALTLTVNKYAVEK 235

Query: 350 Q---NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
           +   +K+   +  DD+      ++SV + +P+F GQTKTKL + + +  V+    +   H
Sbjct: 236 KFIKDKKEDRLSGDDIREGLAAVISVKVGDPQFEGQTKTKLGNTEVKGFVQRVCSEHLGH 295

Query: 407 YLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTE 465
           +L  NP EA  +++ ++E    R+  R  R+ V RKTA     LPGKLADC  N     E
Sbjct: 296 WLEANPAEAKTIIKKIVESQRARMAARNARDLVRRKTATDIGGLPGKLADCRSNDPGKCE 355

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
           ++IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G    
Sbjct: 356 VYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGIH 415

Query: 526 SQYREEDLR 534
            ++    LR
Sbjct: 416 DEFDISKLR 424


>gi|19909661|dbj|BAB87026.1| DNA gyrase subunit B [Zoogloea ramigera]
          Length = 403

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 146/412 (35%), Positives = 222/412 (53%), Gaps = 27/412 (6%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL------------E 194
           +Y++SGGLHGVG+S VNALS  L +TVAR       +F+RG  +               +
Sbjct: 1   SYKVSGGLHGVGVSCVNALSKWLRLTVARDGHKHFMEFNRGHAVDRNIELVDGVETSPLK 60

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
                   RGTR+ +  D +IFG    +    L K  +  ++L+  VK      +     
Sbjct: 61  VIGDTTK-RGTRVHYLADEEIFGTV-EYHYEILAKRLRELSFLNNGVKIRLVDQR----- 113

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK-KGTHRGTVEWAIAWCEEN- 312
               ++E+F F GG+K +++     +S++   +F    E  +     TVE A+ W +   
Sbjct: 114 --TGKEEDFAFAGGVKGFVEYINRAKSVLHPTVFHSSGESIQAGVPITVEVAMQWNDSYA 171

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
            ++  Y N I   +GGTH +GLR A+TR I KY E  +   K  + I  DD+      +L
Sbjct: 172 EQVLCYTNNIPQADGGTHLTGLRTAMTRVINKYIEENEIAKKAKVDISGDDMREGLACVL 231

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV + +P+FA QTK KLVS +A+  VE  +      +L++ PI+A  +   ++E S  R 
Sbjct: 232 SVKMPDPKFASQTKMKLVSGEARPAVEEVVAQKLADFLLERPIDAKTICGKIVEASRARE 291

Query: 431 RRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             R+ RE+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+
Sbjct: 292 AARRAREMTRRKGVLDGVGLPGKLADCQEKDPALCEIYIVEGDSAGGSAKQGRDRKFQAI 351

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
           LPLRGK+LNV  A  +K+ +++QI  L+ ALG       ++ E LRY ++I+
Sbjct: 352 LPLRGKVLNVERARFDKLISSEQITTLITALGTSIGADDFKPEKLRYHRIIL 403


>gi|22450170|dbj|BAC10602.1| DNA gyrase B subunit [Shewanella marinintestina]
 gi|22450174|dbj|BAC10604.1| DNA gyrase B subunit [Shewanella marinintestina]
          Length = 377

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 136/385 (35%), Positives = 206/385 (53%), Gaps = 15/385 (3%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS +L +T+ R   ++ Q ++ G+P +P+    +     GT I F P
Sbjct: 1   GGLHGVGVSVVNALSSKLQMTIRRDGKVYEQFYTHGVPDAPITAIGEATK-TGTEIRFWP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F D   F    L K  +  ++L+  V      +++  +       E F + GG+  
Sbjct: 60  SAETFSDVL-FHFDILAKRVRELSFLNSGVGIRLVDERDNRD-------EFFKYEGGISA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++     N++ ++ E+F    E+      TVE A+ W +     I  + N I   +GGTH
Sbjct: 112 FVDYLNVNKTPVNKEVFHFIQERDD--GITVEVAMQWNDGFQENIFCFTNNIPQRDGGTH 169

Query: 331 ESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  Y E      K       DD       ++SV + +P+F+ QTK KLV
Sbjct: 170 LAGFRGALTRNLNNYMEREGYNKKGKTGATGDDAREGLTAVISVKVPDPKFSSQTKDKLV 229

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447
           S + +  VE  + +    YL+++P EA  ++  +I+ +  R   RK R    RK A+   
Sbjct: 230 SSEVKSAVEQTMGEQLGDYLMEHPNEAKMIVGKIIDAARAREAARKAREMTRRKGALDLG 289

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+
Sbjct: 290 GLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 349

Query: 508 RNNQQIMDLVQALGCRTRSQYREED 532
            ++Q++  L+ ALGC       + D
Sbjct: 350 LSSQEVATLITALGCGIGRDEYDPD 374


>gi|22450172|dbj|BAC10603.1| DNA gyrase B subunit [Shewanella marinintestina]
          Length = 380

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 139/391 (35%), Positives = 210/391 (53%), Gaps = 16/391 (4%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS +L +T+ R   ++ Q ++ G+P +P+    +     GT I F P
Sbjct: 1   GGLHGVGVSVVNALSSKLQMTIRRDGKVYEQFYTHGVPDAPITAIGEATK-TGTEIRFWP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F D   F    L K  +  ++L+  V      +++  +       E F + GG+  
Sbjct: 60  SAETFSDVL-FHFDILAKRVRELSFLNSGVGIRLVDERDNRD-------EFFKYEGGISA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++     N++ ++ E+F    E+      TVE A+ W +     I  + N I   +GGTH
Sbjct: 112 FVDYLNVNKTPVNKEVFHFIQERDD--GITVEVAMQWNDGFQENIFCFTNNIPQRDGGTH 169

Query: 331 ESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  Y E      K       DD       ++SV + +P+F+ QTK KLV
Sbjct: 170 LAGFRGALTRNLNNYMEREGYNKKGKTGATGDDAREGLTAVISVKVPDPKFSSQTKDKLV 229

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447
           S + +  VE  + +    YL+++P EA  ++  +I+ +  R   RK R    RK A+   
Sbjct: 230 SSEVKSAVEQTMGEQLGDYLMEHPNEAKMIVGKIIDAARAREAARKAREMTRRKGALDLG 289

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+
Sbjct: 290 GLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 349

Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537
            ++Q++  L+ ALGC   R +Y  +  RY  
Sbjct: 350 LSSQEVATLITALGCGIGRDEYDPDKTRYHN 380


>gi|51571593|emb|CAH18963.1| gyrase B [Corallococcus coralloides]
          Length = 366

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 129/377 (34%), Positives = 200/377 (53%), Gaps = 16/377 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG++ VN LS+   V + R   ++ Q ++RG+     ++     +KRGT I F
Sbjct: 1   VSGGLHGVGVTCVNFLSEWFKVRIQRAGKVYEQSYARGVANGAPQEVG-TTDKRGTMIHF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +PD ++      F+   L +  +  A+L+  +      ++   E         F F GG+
Sbjct: 60  KPDTQVMETV-DFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD-------FKFEGGI 111

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
            ++++   + +  +  +    KTE++G    ++E A+ W +     I ++ N I T EGG
Sbjct: 112 SSFVEYLNKAKEALHDKPVFIKTEREGV---SLEIAMQWNDGYDERIFTFANNINTHEGG 168

Query: 329 THESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTK 386
           +H SG + ALTR +  YAE     + +      +D       ++SV +  P+F GQTKTK
Sbjct: 169 SHLSGFKAALTRTLNSYAEKGSLWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQTKTK 228

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIR 445
           L + + +  VE  + D    +L +NP  A K+   +          R+ +  V RK  + 
Sbjct: 229 LGNSEVKGLVEQMVNDQLASFLEENPPLAKKVAAKIGDACRARLAARKARETVRRKGVLD 288

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC     H +EL+IVEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  E
Sbjct: 289 GGGLPGKLADCQSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFE 348

Query: 506 KIRNNQQIMDLVQALGC 522
           K+  + +I+ L+ ALG 
Sbjct: 349 KMLTSAEIVTLITALGT 365


>gi|297581950|ref|ZP_06943870.1| DNA gyrase subunit B [Vibrio cholerae RC385]
 gi|297533817|gb|EFH72658.1| DNA gyrase subunit B [Vibrio cholerae RC385]
          Length = 471

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 105/222 (47%), Positives = 148/222 (66%), Gaps = 2/222 (0%)

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVN 439
            QTK KLVS + +  VE+A+ +    +L +NP EA  +   +I+ +  R   RK R    
Sbjct: 1   SQTKDKLVSSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTR 60

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 61  RKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 120

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
             A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTF
Sbjct: 121 EKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTF 180

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKI 600
           FY++M +LIE+ ++++  PPL+++ +G +  Y  DEE   + 
Sbjct: 181 FYRQMPELIERGYIYIAQPPLYKVKKGKQEQYIKDEEAMNQY 222



 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G +             L+   K  +  + I R+KGLGEM   QL ET MD   R ++
Sbjct: 374 IKRGERVQPISS---FAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMM 430

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +       +    LMG + + R  FI+  A  + ++ 
Sbjct: 431 QVTIEDAVG----ADELFTTLMGDQVEPRRAFIETNALKVANLD 470


>gi|161339254|gb|ABX64378.1| GyrB [Gordonia amicalis]
 gi|161339258|gb|ABX64380.1| GyrB [Gordonia amicalis]
          Length = 407

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 133/412 (32%), Positives = 207/412 (50%), Gaps = 38/412 (9%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD+ +Y +SGGLHGVGISVVNALS ++ + +AR    ++Q +S   P +   ++    
Sbjct: 1   GKFDSDSYAVSGGLHGVGISVVNALSTKVELEIARDGHNWAQTYSYAKPGAL--EQGDAT 58

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK----------- 249
            K GT + F PDP+IF +   F+A  + +  Q  A+L+  +    +  +           
Sbjct: 59  RKTGTTVRFWPDPEIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEAPGDAN 118

Query: 250 ------------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGK 291
                             E A+    P+   +++P GL  Y++     +  I + +    
Sbjct: 119 GDEDAPATDVAEVVLTETEKAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGFS 178

Query: 292 TEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
            + +G     VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +
Sbjct: 179 AKGEGH---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKK 235

Query: 351 --NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
              ++   +  DD+      ++S  + +P+F GQTKTKL + + +  V+    +   H+ 
Sbjct: 236 LIKEKDGKLTGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWF 295

Query: 409 VQNPIEATKLLEWVIER-SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
             NP EA  +++   +        RR +  V RKTA     LPGKLADC  N     E++
Sbjct: 296 EANPAEAKIIIKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVY 355

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
           IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A
Sbjct: 356 IVEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITA 407


>gi|262272831|gb|ACY40635.1| GyrB [Leptotrichia shahii]
          Length = 230

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 98/229 (42%), Positives = 141/229 (61%), Gaps = 1/229 (0%)

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP+F GQTKTKL + +    V N +      YL  +P  A K++E ++     R   +K
Sbjct: 1   PEPQFEGQTKTKLGNSEVTGIVSNIVGGNLKFYLEDHPKAAEKIIEKMVMSKRAREAAKK 60

Query: 435 QREVN-RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            RE+  RK  +    LPGKLADCS      +E+FIVEG+SAGGSAKQ R+R  QA+LPLR
Sbjct: 61  ARELVLRKNTLEVGSLPGKLADCSSKDPSESEIFIVEGNSAGGSAKQGRDRRFQAILPLR 120

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIAS 553
           GKILNV  +G  K   N +I  ++ A G         + LRY K++IMTDADVDGAHI +
Sbjct: 121 GKILNVEKSGVHKALENAEIRAMITAFGAGFGDDMDIKKLRYHKIVIMTDADVDGAHIRT 180

Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILE 602
           L+LTFFY+ + +LI + ++++  PPL++I  G    YA+ ++  +++ +
Sbjct: 181 LMLTFFYRHLRELINEGYIYIAQPPLYKIQAGKAIRYAYSDDQLKQVTK 229


>gi|319958756|gb|ADV90548.1| DNA gyrase subunit B [Bacillus pumilus]
 gi|319958758|gb|ADV90549.1| DNA gyrase subunit B [Bacillus pumilus]
 gi|319958760|gb|ADV90550.1| DNA gyrase subunit B [Bacillus pumilus]
          Length = 366

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 130/375 (34%), Positives = 197/375 (52%), Gaps = 13/375 (3%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LS  L VTV R   I  Q+F RG+P   LE   +  +  GT   F PDP+IF +   FD 
Sbjct: 1   LSTTLDVTVYRDGKIHYQQFKRGVPAGDLEIIGET-DVTGTTTHFVPDPEIFTETIEFDY 59

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             L    +  A+L+  V       +E  E+        + + GG+K+Y++    ++ ++ 
Sbjct: 60  DTLANRVRELAFLTKGVNIIIEDLREGKERRNE-----YCYEGGIKSYVEHLNRSKEVVH 114

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIK 343
            E    + EK G    T+E A+ + +       S+ N I T EGGTHE+G +  LTR I 
Sbjct: 115 EEPVYIEGEKDGI---TIEVALQYNDSYSSNIYSFANNINTYEGGTHEAGFKTGLTRVIN 171

Query: 344 KYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            YA      +    ++  +D+      I+S+   +P+F GQTKTKL + +A+   ++   
Sbjct: 172 DYARKNGVFKDGDSNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDSLFS 231

Query: 402 DPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
           +  + +L++NP  A K++E  V+        ++ +    RK+A+    LPGKLADCS   
Sbjct: 232 EALEKFLLENPDAAKKIVEKGVMAARARMAAKKARELTRRKSALEVSSLPGKLADCSSKD 291

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  ++ AL
Sbjct: 292 PSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITAL 351

Query: 521 GCRTRSQYREEDLRY 535
           G      +  E  RY
Sbjct: 352 GTGIGEDFTLEKARY 366


>gi|262272833|gb|ACY40636.1| GyrB [Leptotrichia wadei]
          Length = 230

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 98/229 (42%), Positives = 141/229 (61%), Gaps = 1/229 (0%)

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP+F GQTKTKL + +    V N +      YL  +P  A K++E ++     R   +K
Sbjct: 1   PEPQFEGQTKTKLGNSEVTGIVSNIVGGNLKFYLEDHPKAAEKIIEKMVMSKRAREAAKK 60

Query: 435 QREVN-RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            RE+  RK  +    LPGKLADCS      +E+FIVEG+SAGGSAKQ R+R  QA+LPLR
Sbjct: 61  ARELVLRKNTLEVGSLPGKLADCSSKDPAESEIFIVEGNSAGGSAKQGRDRRFQAILPLR 120

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIAS 553
           GKILNV  +G  K   N +I  ++ A G         + LRY K++IMTDADVDGAHI +
Sbjct: 121 GKILNVEKSGVHKALENAEIRAMITAFGAGFGDDMDIKKLRYHKIVIMTDADVDGAHIRT 180

Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILE 602
           L+LTFFY+ + +LI + ++++  PPL++I  G    YA+ ++  +++ +
Sbjct: 181 LMLTFFYRHLRELINEGYIYIAQPPLYKIQAGKAIRYAYSDDQLKQVTK 229


>gi|56675164|emb|CAI34884.1| DNA gyrase subunit B [Aeromonas veronii]
          Length = 371

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 138/382 (36%), Positives = 209/382 (54%), Gaps = 16/382 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 169 FRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 229 VKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 348

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 349 QEVGTLITALGCGIGRDEYNPD 370


>gi|22450180|dbj|BAC10607.1| DNA gyrase B subunit [Shewanella sairae]
          Length = 377

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 136/385 (35%), Positives = 208/385 (54%), Gaps = 15/385 (3%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS +L +T+ R   ++ Q ++ G+P +P+    +     GT I F P
Sbjct: 1   GGLHGVGVSVVNALSSKLQMTIRRDGKVYEQFYTHGVPDAPIAAIGEATK-TGTEIRFWP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F D   F    L K  +  ++L+  V      +++  +       E F + GG+  
Sbjct: 60  SAETFSDVL-FHFDILAKRVRELSFLNSGVGIRLVDERDNRD-------EFFKYEGGISA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++     N++ ++ E+F    E++     TVE A+ W +     I  + N I   +GGTH
Sbjct: 112 FVDYLNVNKTPVNKEVFHFCQERED--GITVEVAMQWNDGFQENIFCFTNNIPQRDGGTH 169

Query: 331 ESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  Y E      K   +   DD       ++SV + +P+F+ QTK KLV
Sbjct: 170 LAGFRGALTRNLNNYMEREGYNKKGKTAATGDDAREGLTAVISVKVPDPKFSSQTKDKLV 229

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447
           S + +  VE  + +    YL+++P EA  ++  +I+ +  R   RK R    RK A+   
Sbjct: 230 SSEVKSAVEQTMGEQLGDYLMEHPNEAKMIVGKIIDAARAREAARKAREMTRRKGALDLG 289

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+
Sbjct: 290 GLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 349

Query: 508 RNNQQIMDLVQALGCRTRSQYREED 532
            ++Q++  L+ ALGC       + D
Sbjct: 350 LSSQEVATLITALGCGIGRDEYDPD 374


>gi|56675174|emb|CAI34889.1| DNA gyrase subunit B [Aeromonas jandaei]
          Length = 371

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 139/382 (36%), Positives = 209/382 (54%), Gaps = 16/382 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y E      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 169 FRTALTRTLNSYMEKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 229 VKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 348

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 349 QEVGTLITALGCGIGRDEYNPD 370


>gi|294963312|gb|ADF50143.1| DNA gyrase subunit B [Bacillus axarquiensis]
          Length = 361

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 132/368 (35%), Positives = 202/368 (54%), Gaps = 13/368 (3%)

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           +NALS EL VTV R   I  Q ++RG+P+S LE   +  +  GT   F PDP+IF +   
Sbjct: 1   INALSTELDVTVHRDGKIHRQVYNRGVPVSDLEVIGET-DHTGTTTHFVPDPEIFTETTE 59

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L    +  A+L+  V       +E  E+        +++ GG+K+Y++    ++ 
Sbjct: 60  YEYDLLANRVRELAFLTKGVNITIEDKREGQERKNE-----YHYEGGIKSYVEYLNRSKE 114

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
           ++  E    + EK G    TVE A+ + +     I S+ N I T EGGTHE+G +  LTR
Sbjct: 115 VVHEEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTR 171

Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  YA      +    ++  DD+      I+S+   +P+F GQTKTKL + +A+   + 
Sbjct: 172 VINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDT 231

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
                 + ++++NP  A K+++  +  +  R+  +K RE   RK+A+    LPGKLADCS
Sbjct: 232 LFSAALETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCS 291

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  ++
Sbjct: 292 SKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMI 351

Query: 518 QALGCRTR 525
            ALG    
Sbjct: 352 TALGTGIE 359


>gi|157073805|dbj|BAF79901.1| gyrase B [Methylobacterium rhodinum]
          Length = 399

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 140/408 (34%), Positives = 214/408 (52%), Gaps = 21/408 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS  L + + R       +F  G  ++PLE      ++RG
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSVSLKLRIWRAGKEHRMEFRHGDAVAPLEVVGPAGDRRG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF P    F     FD   L K  +  A+L+  V+   +  +    K      EE  
Sbjct: 61  TEVTFTPSQDTF-TMVEFDYPTLEKRLRELAFLNSGVRIVLTDARHAEHKR-----EELC 114

Query: 265 FPGGLKTYLQTKLENRSLIS--SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           + GG++ +++    +R  +   ++  T   E+ G     VE A  W +     +  + N 
Sbjct: 115 YEGGVEEFVRYLDRSRKPVDGMAKPVTVLGERDGI---RVEVAFWWNDSFNETVLPFTNN 171

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R ALTR I  YAE +   +   +    DD       ++SV + +P+F
Sbjct: 172 IPQRDGGTHMAGFRAALTRQITGYAESSGIAKREKVSLTGDDCREGLTAVISVQVPDPKF 231

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK-LLEWVIERSEERLRRRKQREV 438
           + QTK KLVS + +  VEN L +    +L +NP +A   + + V+  +     R+ +  +
Sbjct: 232 SSQTKDKLVSSEVRPAVENILNEGLSTWLEENPAQAKSVMGKVVLAAAAREAARKARETI 291

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +      EL +VEGDSAGGSAKQ R+R+ QAVLPLRGKILN
Sbjct: 292 TRKGALDIASLPGKLADCQERDPSKCELLLVEGDSAGGSAKQGRDRTFQAVLPLRGKILN 351

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVII 540
           V    ++++ ++ +I  L+ ALG         R  +  + LRY ++II
Sbjct: 352 VERVRADRMLSSAEIGTLITALGAGIGRSSTDREGFNPDKLRYHRIII 399


>gi|95108291|emb|CAK18167.1| DNA gyrase subunit B [Aeromonas salmonicida subsp. smithia]
 gi|237761973|emb|CAY86116.1| DNA gyrase subunit B [Aeromonas salmonicida subsp. smithia]
          Length = 372

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 136/382 (35%), Positives = 209/382 (54%), Gaps = 15/382 (3%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++     +  GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPT 60

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   +    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 61  IFTDTL-YHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVE 112

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+       VE A+ W +     +  + N I   +GGTH  G
Sbjct: 113 YLNQNKTPIHPKVFHFSTEQDCI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 169

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 170 FRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 229

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 230 VKTAVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 289

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 290 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 349

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 350 QEVGTLITALGCGIGRDEYNPD 371


>gi|209863325|gb|ACI88762.1| DNA gyrase subunit B [Aeromonas sp. JH123]
          Length = 368

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 138/380 (36%), Positives = 209/380 (55%), Gaps = 16/380 (4%)

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P
Sbjct: 1   LHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSP 59

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF D   F    L K  +  ++L+  V      +++  E         F + GG+K ++
Sbjct: 60  TIFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFV 111

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  
Sbjct: 112 EYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLV 168

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS 
Sbjct: 169 GFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSS 228

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    L
Sbjct: 229 EVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGL 288

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ +
Sbjct: 289 PGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMIS 348

Query: 510 NQQIMDLVQALGCRTRSQYR 529
           +Q++  L+ ALGC       
Sbjct: 349 SQEVGTLITALGCGIGRDEY 368


>gi|62085682|gb|AAX63233.1| DNA gyrase subunit B [Gordonia desulfuricans]
          Length = 410

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 130/415 (31%), Positives = 204/415 (49%), Gaps = 40/415 (9%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVGISVVNALS ++ V +AR    +++ F+   P      +     K GT + F PDP 
Sbjct: 1   HGVGISVVNALSTKVEVEIARDGYNWAETFTDSKPGEL--VQGDATRKTGTTVRFWPDPS 58

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK------------------------- 249
           IF +   F+A  + +  Q  A+L+  +    + ++                         
Sbjct: 59  IFTETTAFNAETVARRLQEMAFLNKGLTITLTDNRPKAVEVPGDPNGDAETGEGGPDTAE 118

Query: 250 ------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
                 E       P+   +++P GL  Y++     ++ I   +     +  G     VE
Sbjct: 119 AVKSEEEKKVAASKPKTRTYHYPDGLVDYIKHINRTKTAIHKSVIGFTGKGTGH---EVE 175

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISD 360
            A+ W +     + ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  D
Sbjct: 176 IAMQWNDGYSESVHTFANTINTHEGGTHEEGFRAALTRVVNSYARDKKLLKEKDSNLTGD 235

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D+      ++SV + EP+F GQTKTKL + + +  V+ A  +  +H+   NP EA  ++ 
Sbjct: 236 DIREGLAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKASGEHLEHWFEANPAEAKVIVN 295

Query: 421 WVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
             ++ +  RL  RK R+ V RK+A     LPGKLADC  N     E+++VEGDSAGGSAK
Sbjct: 296 KAVDSAHARLAARKARDLVRRKSATDIGGLPGKLADCRSNDPSKCEVYLVEGDSAGGSAK 355

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
             R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LR
Sbjct: 356 TGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDISKLR 410


>gi|22761957|dbj|BAC11765.1| gyrase B [Helicobacter pylori]
          Length = 389

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 144/399 (36%), Positives = 221/399 (55%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NK 202
           N TY++SGGLHGVG+SVVNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +   +
Sbjct: 1   NDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKE 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT I F PD  +      F A  L K  +  AYL+  +K  +  +K           E 
Sbjct: 61  SGTTIEFFPDESVMEVV-EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLHET 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
           +++  GLK +++   + + L++  I     +++      V  A A  + N    S+ N I
Sbjct: 113 YFYEDGLKQFVKDSAK-KELLTPIISFKSMDEETRTSIEVALAYAD-DYNENTLSFVNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T EGGTHE+G ++ L++ I +Y +     +    IS+D+    + ++S+ + EP F GQ
Sbjct: 171 KTSEGGTHEAGFKMGLSKAILQYIDNNIKTKDSRPISEDIKEGLIAVVSLKMSEPLFEGQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TK+KL S  A+  V   + D    +L +NP EA  +    +  ++ R   +K RE   +K
Sbjct: 231 TKSKLGSSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKK 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC       +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  
Sbjct: 291 DNLSVGTLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +   KI  +++I +++ A GC  +  +  E LRY K+II
Sbjct: 351 SHLSKILKSEEIKNMITAFGCGIQESFDIERLRYHKIII 389


>gi|56675178|emb|CAI34891.1| DNA gyrase subunit B [Aeromonas sp. F458]
 gi|56675180|emb|CAI34892.1| DNA gyrase subunit B [Aeromonas hydrophila]
 gi|95108297|emb|CAK18170.1| DNA gyrase subunit B [Aeromonas hydrophila subsp. ranae]
          Length = 371

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 138/382 (36%), Positives = 209/382 (54%), Gaps = 16/382 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFSDTL-FHYEILAKRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 169 FRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 229 VKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 348

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 349 QEVGTLITALGCGIGRDEYNPD 370


>gi|45580834|emb|CAG14994.1| DNA gyrase subunit beta [Aeromonas simiae]
 gi|45580836|emb|CAG14995.1| DNA gyrase subunit beta [Aeromonas simiae]
          Length = 372

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 137/383 (35%), Positives = 211/383 (55%), Gaps = 17/383 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD L +T+ RQ  ++ Q +  G P +PL++        GT + F P P 
Sbjct: 1   HGVGVSVVNALSDTLKLTIRRQGHVYEQTYKLGEPQAPLKQIGDAT-TTGTEVRFWPSPT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L K  +  ++L+  V    S +++  E         F + GG+K +++
Sbjct: 60  IFSDTL-FHYETLAKRLRELSFLNSGVSIVLSDERDGREIN-------FCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              ++++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQSKTPIHPKVFHFSTEQDGI---GVEVAMQWNDGYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
            R ALTR +  Y +    ++  +  +   DD+    + ++SV + +P+F+ QTK KLVS 
Sbjct: 169 FRTALTRTLNTYMDKEDYSKKAKMSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSS 228

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRL 449
           + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK R    RK A+    L
Sbjct: 229 EVKTAVEQAMGEKMAEFLLENPSDAKIVVNKIIDAARAREAARKAREMTRRKGALDIAGL 288

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ +
Sbjct: 289 PGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMIS 348

Query: 510 NQQIMDLVQALGCRTRSQYREED 532
           +Q++  L+ ALGC         D
Sbjct: 349 SQEVGTLITALGCGIGRDEYNPD 371


>gi|209863329|gb|ACI88764.1| DNA gyrase subunit B [Aeromonas sp. JH121]
          Length = 371

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 138/380 (36%), Positives = 209/380 (55%), Gaps = 16/380 (4%)

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P
Sbjct: 4   LHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSP 62

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF D   F    L K  +  ++L+  V      +++  E         F + GG+K ++
Sbjct: 63  TIFSDTL-FHYEILAKRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFV 114

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  
Sbjct: 115 EYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLV 171

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS 
Sbjct: 172 GFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSS 231

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    L
Sbjct: 232 EVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGL 291

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ +
Sbjct: 292 PGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMIS 351

Query: 510 NQQIMDLVQALGCRTRSQYR 529
           +Q++  L+ ALGC       
Sbjct: 352 SQEVGTLITALGCGIGRDEY 371


>gi|51571577|emb|CAH18955.1| gyrase B [Corallococcus coralloides]
          Length = 364

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 133/375 (35%), Positives = 200/375 (53%), Gaps = 16/375 (4%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG++ VN LS+   V V R   ++ Q ++RG+  SP  +     +KRGT I F+P
Sbjct: 1   GGLHGVGVTCVNFLSEWFKVRVQRDGKVYEQGYARGVSTSPPVEVG-TTDKRGTLIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           DP I      F+   L +  +  A+L+  +      ++   E         F F GG+ +
Sbjct: 60  DPTIMETA-DFNFETLSQRLRELAFLNAGLHIIIRDERTQKEHD-------FKFDGGIAS 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++   + +  +  +    K+E++G    ++E A+ W +     I ++ N I T EGG+H
Sbjct: 112 FVEYLNKAKEALHDKPVFIKSEREGV---SLEIAMQWNDGYDERIFTFANNINTHEGGSH 168

Query: 331 ESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            SG + ALTR +  YAE     + +      +D       ++SV +  P+F GQTKTKL 
Sbjct: 169 LSGFKAALTRTLNSYAEKGAVWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQTKTKLG 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRKL 447
           + + +  VE  + D    +L +NP  A K++  V          R+ +  V RK  +   
Sbjct: 229 NSEVKGLVEQMVNDQLASFLEENPPVAKKVVAKVGDACRARIAARKARETVRRKGVLDGG 288

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC     H +EL+IVEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  EK+
Sbjct: 289 GLPGKLADCQSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKM 348

Query: 508 RNNQQIMDLVQALGC 522
             + +I+ L+ ALG 
Sbjct: 349 LTSAEIVTLITALGT 363


>gi|51571559|emb|CAH18946.1| gyrase B [Corallococcus coralloides]
          Length = 362

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 127/374 (33%), Positives = 198/374 (52%), Gaps = 16/374 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG++ VN LS+   V V R   ++ Q ++RG+     ++     +KRGT I F
Sbjct: 1   VSGGLHGVGVTCVNFLSEWFKVRVQRAGKVYEQSYARGVSNGSPQEVG-TTDKRGTTIHF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +PD  +      F+   L +  +  A+L+  +      ++   E         F F GG+
Sbjct: 60  KPDSTVMETV-DFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD-------FKFDGGI 111

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
            ++++   + +  +  +    K+E++G    ++E A+ W +     I ++ N I T EGG
Sbjct: 112 SSFVEYLNKAKEALHDKPVYIKSEREGV---SLEIAMQWNDGYDERIFTFANNINTHEGG 168

Query: 329 THESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTK 386
           +H SG + ALTR +  YAE     + +      +D       ++SV +  P+F GQTKTK
Sbjct: 169 SHLSGFKAALTRTLNSYAEKGGLWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQTKTK 228

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIR 445
           L + + +  VE  + D    +L +NP  A K++  +          R+ +  V RK  + 
Sbjct: 229 LGNSEVKGLVEQMVNDQLASFLEENPPLAKKVVVKIGDACRARIAARKARETVRRKGVLD 288

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC     H +EL+IVEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  E
Sbjct: 289 GGGLPGKLADCQSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFE 348

Query: 506 KIRNNQQIMDLVQA 519
           K+  + +I+ L+ A
Sbjct: 349 KMLTSAEIVTLITA 362


>gi|294963285|gb|ADF50130.1| DNA gyrase subunit B [Bacillus subtilis]
          Length = 365

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 133/374 (35%), Positives = 203/374 (54%), Gaps = 13/374 (3%)

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           +NALS EL VTV R   I  Q + RG+P++ LE   +  +  GT   F PDP+IF +   
Sbjct: 1   INALSTELDVTVHRDGKIHRQTYKRGVPVTDLEIIGET-DHTGTTTHFVPDPEIFSETTE 59

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +D   L    +  A+L+  V       +E  E+        +++ GG+K+Y++    ++ 
Sbjct: 60  YDYDLLANRVRELAFLTKGVNITIEDKREGQERKNE-----YHYEGGIKSYVEYLNRSKE 114

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
           ++  E    + EK G    TVE A+ + +     I S+ N I T EGGTHE+G +  LTR
Sbjct: 115 VVHEEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTR 171

Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  YA      +    ++  DD+      I+S+   +P+F GQTKTKL + +A+   + 
Sbjct: 172 VINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDT 231

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
                 + ++++NP  A K+++  +  +  R+  +K RE   RK+A+    LPGKLADCS
Sbjct: 232 LFSTAMETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCS 291

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  ++
Sbjct: 292 SKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMI 351

Query: 518 QALGCRTRSQYREE 531
            ALG       + E
Sbjct: 352 TALGTGMGEDKQPE 365


>gi|211927111|dbj|BAG82808.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 428

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 136/431 (31%), Positives = 216/431 (50%), Gaps = 38/431 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE----KKEKVR 200
           +  Y +SGGLHGVGISVVNALS ++ V +      + Q F               K +  
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSKVEVEIDVDGYHWQQNFHWDEKKRDSVAEELIKGEPT 60

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA-------- 252
            + GT + F  DPK+F +   +D   + +  Q  A+L+  +    + ++ +A        
Sbjct: 61  TRTGTTVRFWADPKVFTETTHYDFETVSRRLQEMAFLNKGLTITLTDERPVAVEVPDEAI 120

Query: 253 -----------------EKYGIPEKEEFYFPGGLKTYLQTKL--ENRSLISSEIFTGKTE 293
                            E      +  F++P GL  Y++      +++ I + I + + +
Sbjct: 121 TEEAPSAHEDDVAAALAEVAPKKRERIFHYPDGLVDYVKHINARTSKTPIHNSIISFEGK 180

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350
           +KG     VE A+ W       + ++ NTI T EGGTHE G R ALT  +K YA+  +  
Sbjct: 181 EKGH---EVEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRTALTGVVKAYAKDKKLV 237

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            ++   +  DD+      ++SV + EP+F GQTKTKL + + +  V+   R+    +   
Sbjct: 238 KEKDGDLSGDDIREGLAAVISVKVAEPQFEGQTKTKLGNSEIKGFVQKVCREQLQFWFDS 297

Query: 411 NPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           NP +A  +++     ++ RL  RK RE V RK+A     LPGKLADC  N     E++IV
Sbjct: 298 NPADAKTIVQKAAASAQARLAARKARELVRRKSATDIGGLPGKLADCRSNDPDKCEVYIV 357

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           EGDSAGGSAK  R+   QA+LP+RGKI+NV  A  +K+  N ++  ++ A G     ++ 
Sbjct: 358 EGDSAGGSAKSGRDSMYQAILPIRGKIINVEKARIDKVLKNTEVQSIITAFGTGIHDEFD 417

Query: 530 EEDLRYEKVII 540
              LRY+K+++
Sbjct: 418 IAKLRYKKIVL 428


>gi|109452316|dbj|BAE96355.1| DNA gyrase subunit B [Pasteurella pneumotropica]
          Length = 375

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 138/385 (35%), Positives = 207/385 (53%), Gaps = 15/385 (3%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGV +SV NALSD+L +T+ RQ  +  Q +  G P +PL          GT + F P
Sbjct: 2   GGLHGVLVSVANALSDKLQLTIRRQGHVHEQFYHLGEPQTPLTTIIGDTEATGTSVLFWP 61

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
            P IF     FD   L K  +  ++L+  V       ++  E       + F++ GG++ 
Sbjct: 62  SPDIFA-ITTFDYKILAKRLRELSFLNSGVSIRLVDKRDGTE-------DHFHYEGGIQA 113

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTH 330
           +++   +N++ I  + F   TEK G     VE A+ W +  N  +  + N I   +GGTH
Sbjct: 114 FVEYLNKNKNPIHPKPFYFTTEKDGI---GVEVALQWNDGVNENVYCFTNNIPQRDGGTH 170

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  Y E      K  ++   DD     V I+SV + +P+F+ QTK KLV
Sbjct: 171 LAGFRGALTRSLNSYMENEGLLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLV 230

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447
           S + +  VE+A+ +    YL++NP +A  ++  +I  +  R   RK R    RK A+   
Sbjct: 231 SSEVKSAVESAMNEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIA 290

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +EL++VEGDSAGGSAK  R+R  QA+LPL+GKILNV  A  +K+
Sbjct: 291 GLPGKLADCQEKDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKM 350

Query: 508 RNNQQIMDLVQALGCRTRSQYREED 532
            ++Q++  L+ ALG     +   + 
Sbjct: 351 LSSQEVGTLITALGWALGVRIYPDK 375


>gi|323122044|gb|ADX30636.1| gyrase B [Verrucosispora sp. RtIII47]
          Length = 375

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 117/381 (30%), Positives = 196/381 (51%), Gaps = 9/381 (2%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS  + V + +   ++ Q++    P    +   +  ++ G+ ++F 
Sbjct: 1   SGGLHGVGVSVVNALSTRMAVEIHKDGFVWRQQYHHSKPTPLDK--GEPTDRTGSAVSFW 58

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PDP +F     FD   + +  Q  A+L+  +      ++    + G   +  F + GG+ 
Sbjct: 59  PDPNVFETV-DFDFQTIYRRLQEMAFLTRGLTINLLDERVEEGEEGKIREVTFKYDGGIA 117

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++    +++ I   +     E++G    ++E A+ W E     + ++ N I T EGGT
Sbjct: 118 DFVRHLNASKNPIHRTVVEYGAEEEG---MSLEIAMQWNESYGESVYTFANNINTHEGGT 174

Query: 330 HESGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           HE G R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQTKTKL 
Sbjct: 175 HEEGFRAALTSVVNRYGAEKKLLKGDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLG 234

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKL 447
           +   +  V+    D    +L +NP EA  ++ +           ++ ++   RK+ +   
Sbjct: 235 NTPVKSFVQRVCNDRLVDWLDRNPAEAKIIITKASQAARARIAAQQARKLARRKSLLESG 294

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++
Sbjct: 295 SMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRV 354

Query: 508 RNNQQIMDLVQALGCRTRSQY 528
             N ++  L+ ALG      +
Sbjct: 355 LKNNEVQALITALGTGIHDDF 375


>gi|319958748|gb|ADV90544.1| DNA gyrase subunit B [Bacillus amyloliquefaciens]
          Length = 368

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 136/377 (36%), Positives = 202/377 (53%), Gaps = 13/377 (3%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LS  L VTV R   I  Q + RG+P++ LE      +K GT   F PDP+IF +   +D 
Sbjct: 1   LSTTLDVTVHRDGKIHYQAYERGVPVADLEVIGDT-DKTGTITHFVPDPEIFKETIVYDY 59

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             L    +  A+L+  V       +E  E+        +++ GG+K+Y++    ++ ++ 
Sbjct: 60  DLLSNRVRELAFLTKGVNITIEDKREGQERKNE-----YHYEGGIKSYVEYLNRSKEVVH 114

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
            E    + EK G    TVE A+ + +     I S+ N I T EGGTHE+G +  LTR I 
Sbjct: 115 EEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVIN 171

Query: 344 KYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            YA       +   ++  DD+      I+S+   +P+F GQTKTKL + +A+   +    
Sbjct: 172 DYARRKGIFKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFS 231

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNI 460
              + +L++NP  A K++E  +  +  R+  +K RE   RK+A+    LPGKLADCS   
Sbjct: 232 SALETFLLENPDSARKIVEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKD 291

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  ++ AL
Sbjct: 292 PSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITAL 351

Query: 521 GCRTRSQYREEDLRYEK 537
           G      +  E  RY K
Sbjct: 352 GTGIGEDFNLEKARYHK 368


>gi|224472822|gb|ACN49120.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. laumondii]
          Length = 369

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 131/377 (34%), Positives = 200/377 (53%), Gaps = 15/377 (3%)

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS++L + + R   +  Q +  G+P SPL+   +   + GTR+ F P    F D 
Sbjct: 1   SVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGET-EQTGTRVRFWPSMDTFRDN 59

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V       +   E       + F++ GG+K +++   +N
Sbjct: 60  TEFQHDILAKRLRELSFLNSGVSIRLIDKRTNIE-------DHFHYEGGIKAFVEFLNKN 112

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I   +F   TEK G     VE ++ W +     I  + N I   +GGTH  G R A+
Sbjct: 113 KTPIHPNVFYFSTEKDGI---GVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 169

Query: 339 TRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR + +Y +      K  +S   DD     V ++S  + +P+F+ QTK KLVS + +  V
Sbjct: 170 TRTLNRYMDKEGYNKKSKVSATGDDAREGLVAVISGKVPDPKFSSQTKDKLVSSEVKTAV 229

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLAD
Sbjct: 230 ETLMNEKLVEYLLENPNDAKTVVSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 289

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 290 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 349

Query: 516 LVQALGCRTRSQYREED 532
           L+ ALGC         D
Sbjct: 350 LITALGCGNGRDEYNPD 366


>gi|190148876|gb|ACE63413.1| DNA gyrase B subunit [Pseudonocardia sp. S073]
          Length = 396

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 124/401 (30%), Positives = 204/401 (50%), Gaps = 20/401 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  L V +     ++ Q ++R +P    +   +   K G+ +T+
Sbjct: 2   VSGGLHGVGVSVVNALSTALDVEIHTDGFVWRQHYARSVPGPLRK--GEPTKKTGSTVTY 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP----------E 259
             D  IF     ++   + +  Q  A+L+  +      ++                   +
Sbjct: 60  WADGDIFETLT-YNIETIRRRLQEMAFLNKGLTITLRDERNGDNGEAEEPDAEGYVAKVK 118

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
           +  F +P GL+ ++    +++  I  ++ +   E  G     VE A+ W       + ++
Sbjct: 119 EYTFCYPNGLEDFVAHLNKSKDPIHKKLVSFTGEGTGHQ---VEVAMQWNSGYTESVYTF 175

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            NTI T EGGTHE G R ALT  + +YA   +   ++  ++  DD+      I+SV ++E
Sbjct: 176 ANTINTHEGGTHEEGFRSALTTTVNRYARDKKLLKEKDPALSGDDIREGLAAIVSVKVKE 235

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ- 435
           P+F GQTKTKL + + +  V+    +    +  +NP EA  ++   ++ ++ R   RK  
Sbjct: 236 PQFEGQTKTKLGNTEVKSFVQRVSNEWLADWFERNPTEARTIVNKAVQSAQARAAARKAR 295

Query: 436 REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
             V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LP+RGK
Sbjct: 296 ELVRRKSAGDIGGLPGKLADCRSTDPSKSEVYIVEGDSAGGSAKSGRDSMFQAILPIRGK 355

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           I+NV  A  +++  N ++  ++ ALG     ++    LRY 
Sbjct: 356 IINVEKARIDRVLKNTEVQAIITALGTGIHDEFDVAKLRYH 396


>gi|294963316|gb|ADF50145.1| DNA gyrase subunit B [Bacillus axarquiensis]
          Length = 357

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 132/365 (36%), Positives = 202/365 (55%), Gaps = 13/365 (3%)

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           +NALS EL VTV R   I  Q ++RG+P+S LE   +  +  GT   F PDP+IF +   
Sbjct: 1   INALSTELDVTVHRDGKIHRQVYNRGVPVSDLEVIGET-DHTGTTTHFVPDPEIFTETTE 59

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L    +  A+L+  V       +E  E+        +++ GG+K+Y++    ++ 
Sbjct: 60  YEYDLLANRVRELAFLTKGVNITIEDKREGQERKNE-----YHYEGGIKSYVEYLNRSKE 114

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
           ++  E    + EK G    TVE A+ + +     I S+ N I T EGGTHE+G +  LTR
Sbjct: 115 VVHEEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTR 171

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  YA       +   ++  DD+      I+S+   +P+F GQTKTKL + +A+   + 
Sbjct: 172 VINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDT 231

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
                 + ++++NP  A K+++  +  +  R+  +K RE   RK+A+    LPGKLADCS
Sbjct: 232 LFSAALETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCS 291

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  ++
Sbjct: 292 SKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMI 351

Query: 518 QALGC 522
            ALG 
Sbjct: 352 TALGT 356


>gi|194277431|gb|ACF39381.1| GyrB [Streptomyces sp. FXJ52]
          Length = 272

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 91/274 (33%), Positives = 142/274 (51%), Gaps = 15/274 (5%)

Query: 79  SEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLH 138
            EV+DN++DE +AG+A+ I+V++  +G + VVD+GRGIPV   P    K  LE++LT LH
Sbjct: 1   QEVVDNSVDEALAGHADKIDVTILADGGVRVVDDGRGIPVGIVP-SEGKPALEVVLTVLH 59

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKF    Y +SGGLHGVG+SVVNALS  + V V      ++Q++  G+P +PL + E 
Sbjct: 60  AGGKFGGGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGHRWTQEYKLGVPTAPLARHEA 119

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI------- 251
                GT +TF  D  IF     +    L +  Q  A+L+  +K   + ++E        
Sbjct: 120 TEE-TGTSVTFWADGDIFET-TDYSFETLSRRFQEMAFLNKGLKINLTDERESAKATAGA 177

Query: 252 ----AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307
                ++    +   +++ GG+  +++     +  +          +      ++E A+ 
Sbjct: 178 DEAGEDEKHEVKSVAYHYEGGIVDFVKYLNSRKGELVHPTVIDLEAEDKDKSLSLEVAMQ 237

Query: 308 WCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
           W       + S+ N I T EGGTHE G R ALT 
Sbjct: 238 WNGGYTEGVYSFANIIHTHEGGTHEEGFRAALTS 271


>gi|197295752|gb|ACH58587.1| gyrase subunit B [Methylobacterium adhaesivum]
          Length = 376

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 135/383 (35%), Positives = 203/383 (53%), Gaps = 15/383 (3%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS  L + + R     + +F  G  +SPL    +   +RGT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSQWLRLRIWRGGMEHAMEFRHGDAVSPLVVVGEGNGRRGTEV 60

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
           +F    + F     FD A L K  +  A+L+  V+   +  +    K      EE Y+ G
Sbjct: 61  SFLASTETFTSI-EFDYATLEKRLRELAFLNSGVRIVLTDARHAEHKR-----EELYYEG 114

Query: 268 GLKTYLQTKLENRSLIS--SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
           G++ +++    +R  I   ++    ++E+ G     VE A  W +     +  + N I  
Sbjct: 115 GVEAFVRYLDRSRKPIDGMAKPIMVRSERDGI---RVEVAFWWNDSFNETVLPFTNNIPQ 171

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQ 382
            EGGTH +G R ALTR +  YAE +   +   +    +D       ++SV + EP F+ Q
Sbjct: 172 REGGTHLAGFRAALTRQVTGYAESSGIAKREKVTLTGEDCREGLTAVISVQVPEPSFSSQ 231

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK KLV+   +  VEN L +   ++L +NP +A  ++  VI  +  R   RK RE   + 
Sbjct: 232 TKDKLVTAAVRPAVENVLNEGLSNWLEENPTQAKSVMGKVILAASAREAARKARETVTRK 291

Query: 443 A-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC +      E+ +VEGDSAGGSAKQ R+R+ QAVLPLRGKILNV  
Sbjct: 292 GVLDIASLPGKLADCQERDPSKCEILLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVER 351

Query: 502 AGSEKIRNNQQIMDLVQALGCRT 524
             ++++ ++ QI  L+ ALG   
Sbjct: 352 VRADRMLSSDQIGTLITALGAGI 374


>gi|156095793|ref|XP_001613931.1| DNA gyrase subunit b [Plasmodium vivax SaI-1]
 gi|148802805|gb|EDL44204.1| DNA gyrase subunit b, putative [Plasmodium vivax]
          Length = 936

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 149/570 (26%), Positives = 242/570 (42%), Gaps = 101/570 (17%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           A  K  +  Y  S GLHGVG+SV NALS  + V V R+  I S +  +G  ++PL  ++ 
Sbjct: 219 APQKSPSQMYRFSSGLHGVGLSVANALSSFMKVKVFRRGKIHSIELEKGKVVTPLSVRDC 278

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI------- 251
             +KRGT+I +RPDP IF +    +A  +       AYL+ R+   +  ++         
Sbjct: 279 PVSKRGTQIHYRPDPTIFKNTIRHNAEMIRNRIHQLAYLNDRLSFYFYDERAAKKAAAEA 338

Query: 252 ---------------------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
                                         E     GGL  Y+++  +N++ +  +    
Sbjct: 339 ENAANAADLADVADHAGNTAEHNNLDFYPYEVIKHEGGLDEYMESLTKNKASLFKDSNKV 398

Query: 291 KTEKKGTHRGTVE--WAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIK-KYAE 347
            +         ++        E +  I S+ N + T +GGTH   ++ A++R +     +
Sbjct: 399 ISITCHHKNVHIDLRLKWTQGEYHEHIISFVNNVNTTDGGTHVDAMKYAISRCVNFNIKK 458

Query: 348 LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               +  ++I  + +      ILS+ +  PEF GQTKTKL S   +  +E+A+ +     
Sbjct: 459 NEATRNFVNIPGEYIREGMTAILSIKMNNPEFEGQTKTKLGSHFLKPILESAIFEKLSEI 518

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQRE--VNRKTAIRKLRLPGKLADCSQNIAHGTE 465
               P     +    ++        +  R+   ++        LPGKL DC  +  +  E
Sbjct: 519 FDFEPNLLNTIYLKALQAKASDEEAKAARDLIRSKNNQCYATILPGKLVDCISDDINRNE 578

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK-IRNNQQIMDLVQALGCRT 524
           +FIVEGDSA GSAKQARNR  QA+LPL+GKILNV    + K I  N ++  L+ A+G   
Sbjct: 579 IFIVEGDSAAGSAKQARNREIQAILPLKGKILNVEKIKNNKRIFENSELKSLITAIGLSV 638

Query: 525 RSQY---------------------------------------------REEDLRYEKVI 539
             +                                               +  LRY K+I
Sbjct: 639 SCENSKIAKGKSTINSKKKDLKKKYDLRSGKKENAQVNNALVSKKKNPLFDTPLRYGKII 698

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI----------------- 582
           IMTDADVDG HI  LLLTF Y+   ++I+  ++F+  PPL+++                 
Sbjct: 699 IMTDADVDGEHIRILLLTFLYRFQKNIIQNGNVFVACPPLYKVTYNRFFDATIKETVMKQ 758

Query: 583 ----TQGTKS-VYAHDEEHKQKILEEFKKH 607
               T+ +K+ ++ + ++    +L    K 
Sbjct: 759 FNVSTKNSKTLIHTYSDDELNVLLGLLDKD 788



 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 53/106 (50%), Positives = 69/106 (65%), Gaps = 1/106 (0%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           ++YDA  I ILEGLE VR RPGMYIG TD K LH +  E+IDN++DE      N I++ +
Sbjct: 51  NDYDAKDIVILEGLEAVRKRPGMYIGNTDVKGLHQILFEIIDNSVDEYNNFECNEIKIVI 110

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST 147
             +  +T+ DNGRGIP + H K   KS LE +LT LH+G KF +  
Sbjct: 111 HQDESVTIEDNGRGIPCDVHEK-TKKSALETVLTVLHSGAKFVDDE 155



 Score = 99.1 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 4/68 (5%)

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669
            + EI RFKGLGEM+A QL  T MD   R L+RV ++  + +        + LMG  +  
Sbjct: 868 KRYEIQRFKGLGEMMADQLWSTTMDPRVRKLIRVTVSDAMRAN---NLIFS-LMGEDSKL 923

Query: 670 RFKFIQER 677
           R  FI E 
Sbjct: 924 RKSFILEN 931


>gi|56675176|emb|CAI34890.1| DNA gyrase subunit B [Aeromonas enteropelogenes]
 gi|66474561|gb|AAY46850.1| GyrB [Aeromonas bestiarum]
 gi|66474577|gb|AAY46858.1| GyrB [Aeromonas sp. RK 217215]
 gi|95108299|emb|CAK18171.1| DNA gyrase subunit B [Aeromonas hydrophila subsp. dhakensis]
          Length = 371

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 138/382 (36%), Positives = 209/382 (54%), Gaps = 16/382 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 169 FRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 229 VKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 348

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 349 QEVGTLITALGCGIGRDEYNPD 370


>gi|66474587|gb|AAY46863.1| GyrB [Aeromonas sp. 15m]
          Length = 371

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 137/382 (35%), Positives = 209/382 (54%), Gaps = 16/382 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPHAPLKQIGDSTG-TGTEVRFWPSPT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFSDTL-FHYEILAKRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +    ++        DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 169 FRTALTRTLNSYMDKEDYRKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 229 VKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 348

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 349 QEVGTLITALGCGIGRDEYNPD 370


>gi|51571551|emb|CAH18942.1| gyrase B [Corallococcus coralloides]
          Length = 366

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 128/378 (33%), Positives = 198/378 (52%), Gaps = 16/378 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG++ VN LS+   V V R   ++ Q ++RG+     ++     +K GT I F+
Sbjct: 1   SGGLHGVGVTCVNFLSEWFKVRVQRAGKVYEQSYARGVSNGSPQEVG-TTDKVGTTIHFK 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PD  +      F+   L +  +  A+L+  +      ++   E         F F GG+ 
Sbjct: 60  PDSTVMETV-DFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD-------FKFDGGIS 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
           ++++   + +  +  +    K+E++G    ++E A+ W +     I ++ N I T EGG+
Sbjct: 112 SFVEYLNKAKEALHDKPVYIKSEREGV---SLEIAMQWNDGYDERIFTFANNINTHEGGS 168

Query: 330 HESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H SG + ALTR +  YAE     + +      +D       ++SV +  P+F GQTKTKL
Sbjct: 169 HLSGFKAALTRTLNSYAEKGGLWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQTKTKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRK 446
            + + +  VE  + D    +L +NP  A K++  +          R+ +  V RK  +  
Sbjct: 229 GNSEVKGLVEQMVNDQLASFLEENPPLAKKVVVKIGDACRARIAARKARETVRRKGVLDG 288

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC     H +EL+IVEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  EK
Sbjct: 289 GGLPGKLADCQSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEK 348

Query: 507 IRNNQQIMDLVQALGCRT 524
           +  + +I+ L+ ALG   
Sbjct: 349 MLTSAEIVTLITALGTGI 366


>gi|209863333|gb|ACI88766.1| DNA gyrase subunit B [Aeromonas sp. JH67]
          Length = 369

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 138/380 (36%), Positives = 209/380 (55%), Gaps = 16/380 (4%)

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P
Sbjct: 2   LHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSP 60

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF D   F    L K  +  ++L+  V      +++  E         F + GG+K ++
Sbjct: 61  TIFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFV 112

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  
Sbjct: 113 EYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLV 169

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS 
Sbjct: 170 GFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSS 229

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    L
Sbjct: 230 EVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGL 289

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ +
Sbjct: 290 PGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMIS 349

Query: 510 NQQIMDLVQALGCRTRSQYR 529
           +Q++  L+ ALGC       
Sbjct: 350 SQEVGTLITALGCGIGRDEY 369


>gi|297515925|gb|ADI44313.1| gyrase B [Micromonospora sp. RtII141]
          Length = 370

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 116/375 (30%), Positives = 193/375 (51%), Gaps = 9/375 (2%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS  + V + +    + Q+++   P    +   +     G+ ++F 
Sbjct: 1   SGGLHGVGVSVVNALSTRMAVEIQKDGFFWRQQYTNSKPSPLEK--GEPTENTGSAVSFW 58

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PDP +F     FD   + +  Q  A+L+  +      ++   ++ G   +  F++ GG+ 
Sbjct: 59  PDPAVFETV-EFDFQTIYRRLQEMAFLTRGLTIHLLDERVAEDEDGKTREVTFHYEGGIA 117

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++    +++ I   +     E+ G    +VE A+ W E     + ++ N I T EGGT
Sbjct: 118 DFVRHLNASKNPIHKTVVEFGAEEAG---MSVEIAMQWNESYGESVYTFANNINTHEGGT 174

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISI-ISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           HE G R ALT  + +Y    +  +       +D+      I+SV + +P+F GQTKTKL 
Sbjct: 175 HEEGFRAALTSVVNRYGTERKLLKGDERLSGEDIREGLAAIISVKLTDPQFEGQTKTKLG 234

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRKTAIRKL 447
           +   +  V+    +    +  +NP EA  +++            ++ ++   RK+ +   
Sbjct: 235 NTPVKGFVQRVCNESLVDWFDRNPAEAKIIIQKASQAARARIAAQQARKLARRKSLLESG 294

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            +PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++
Sbjct: 295 SMPGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRV 354

Query: 508 RNNQQIMDLVQALGC 522
             N ++  L+ ALG 
Sbjct: 355 LKNNEVQALITALGT 369


>gi|66474543|gb|AAY46841.1| GyrB [Aeromonas media]
          Length = 371

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 136/382 (35%), Positives = 209/382 (54%), Gaps = 16/382 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   +    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFTDTL-YHYEILAKRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 169 FRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +++ +  R   RK RE   RK A+    LP
Sbjct: 229 VKTAVEQAMGEKLADFLMENPGDAKIVVNKIMDAARAREAARKARELTRRKGALDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 348

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 349 QEVGTLITALGCGIGRDEYNPD 370


>gi|305861862|gb|ADM72889.1| DNA gyrase B subunit [Shewanella baltica]
          Length = 386

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 137/397 (34%), Positives = 211/397 (53%), Gaps = 16/397 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGV +SV NALS +L +++ R   ++   ++ G+P +P+++        GT I F 
Sbjct: 1   SGGLHGVSVSVANALSXKLRMSIRRAGKVYXXFYTLGVPDAPIKEIGDATK-TGTEIRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
                F D   F    L K  +   +L   V      +++        + E F +  G+ 
Sbjct: 60  XSEDTFSDV-EFHFEILXKRVRELXFLXSGVGIRLVDERDX-------KNEFFKYXXGIS 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            ++     N++ ++ ++F    E++     TVE A+ W +     I  + N I   +GGT
Sbjct: 112 AFVDYLNRNKTPVNKDVFHFMQERED--GITVEVAMQWNDGYQENIFCFTNNIPQRDGGT 169

Query: 330 HESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R ALTR +  Y E      K   S   DD       ++SV + +P+F+ QTK KL
Sbjct: 170 HLVGFRSALTRNLNSYMENEGYNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKL 229

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRK 446
           VS + +  VE  + +  + YL++NP +A  ++  +++ +  R   RK R    RK A+  
Sbjct: 230 VSSEVKTAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDL 289

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 290 GGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 349

Query: 507 IRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
           + ++Q++  L+ ALGC   R +Y  +  RY  +IIMT
Sbjct: 350 MLSSQEVATLITALGCGIGRDEYNPDKTRYHNIIIMT 386


>gi|66474545|gb|AAY46842.1| GyrB [Aeromonas veronii]
          Length = 371

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 138/382 (36%), Positives = 209/382 (54%), Gaps = 16/382 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPA 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFSDTL-FHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------AHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 169 FRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 229 VKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 348

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 349 QEVGTLITALGCGIGHDEYNPD 370


>gi|292494329|dbj|BAI94507.1| DNA gyrase subunit B [Pseudomonas indoloxydans]
          Length = 384

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 143/394 (36%), Positives = 215/394 (54%), Gaps = 18/394 (4%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS EL +T+ R   I+ Q +  G+P +PL       +  GT+I 
Sbjct: 3   QVSGGLHGVGVSVVNALSKELVLTIRRSGKIWEQTYVHGVPQAPLTAVGDT-DGTGTQIH 61

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F+P  + F +   F    L K  +  ++L+  V      ++         ++E F + GG
Sbjct: 62  FKPSEETFANIH-FSWDILAKRLRELSFLNSGVGILLRDER-------TGKEELFKYEGG 113

Query: 269 LKTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           LK +++    N+++++       + E+ G     VE A+ W +     I  + N I   +
Sbjct: 114 LKAFVEYLNTNKTVVNQVFHFSVQREEDGV---GVEVALQWNDSFNENILCFTNNIPQRD 170

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R ALTR +  Y E     +        DD       I+SV + +P+F+ QTK
Sbjct: 171 GGTHLAGFRSALTRHLNNYIEAEGLAKKFKVATTGDDAREGLTAIISVKVPDPKFSSQTK 230

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTA 443
            KLVS + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A
Sbjct: 231 DKLVSSEVKTAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGA 290

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A 
Sbjct: 291 LDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVERAR 350

Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYE 536
            +++ ++Q++  L+ ALGC   R +Y  + LRY 
Sbjct: 351 FDRMISSQEVGTLITALGCGIGRDEYNIDKLRYH 384


>gi|194475600|gb|ACF74547.1| DNA gyrase subunit B [Duganella violaceinigra]
          Length = 403

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 139/412 (33%), Positives = 216/412 (52%), Gaps = 28/412 (6%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG------------IPLSPLE 194
            Y++SGGLHGVG+S VNALS  L VT+ R   +   +F RG            + +SP++
Sbjct: 1   AYKVSGGLHGVGVSCVNALSKLLRVTIRRDGKVHQMEFVRGAAQNREIEMLDGVAVSPIK 60

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
              +  +KRGT + F  D +IF     F    L K  +  ++L+  V    +  +   E 
Sbjct: 61  VIGET-DKRGTDVHFWADEEIFT-HVEFHYEILAKRIRELSFLNNGVNIKLTDQRNGKE- 117

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK--KGTHRGTVEWAIAWCEEN 312
                 E F F GG + +++   + ++++   +F    E+        +V+ ++ W +  
Sbjct: 118 ------EIFAFEGGTRGFVEYINKAKTVLHPTVFQATGERQSDQNTTISVDVSMQWNDAF 171

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369
             ++  + N I   +GGTH +GLR A+TR I KY +      K  + I  DD+      +
Sbjct: 172 NEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIDENDFAKKAKVEISGDDMREGLTCV 231

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           LSV + EP+F+ QTK KLVS + +  VE  +      +L++ P +A  +   ++E +  R
Sbjct: 232 LSVKVPEPKFSSQTKDKLVSSEVRGPVEEIVAKTLTDFLMEKPNDAKIICGKIVEAARAR 291

Query: 430 LRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
              RK R+   RK  +  L L  KLADC +     +EL+IVEGDSAGGSAKQ R+R  QA
Sbjct: 292 EAARKARDLTRRKGIMDGLGLSAKLADCQEKDPALSELYIVEGDSAGGSAKQGRDRKFQA 351

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
           +LPLRGK+LNV  A  EK+ +++QI  L+  LG      ++  E LRY ++I
Sbjct: 352 ILPLRGKVLNVEKARFEKMLSSEQITTLIATLGTSIGADEFNIEKLRYHRII 403


>gi|66474541|gb|AAY46840.1| GyrB [Aeromonas veronii]
          Length = 371

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 138/382 (36%), Positives = 209/382 (54%), Gaps = 16/382 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   +    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFTDTL-YHYEILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + EP+F+ QTK KLVS +
Sbjct: 169 FRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPEPKFSSQTKDKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 229 VKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 348

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 349 QEVGTLITALGCGIGRDEYNPD 370


>gi|23451168|gb|AAN32689.1| DNA gyrase subunit B [Aeromonas media]
 gi|56675158|emb|CAI34881.1| DNA gyrase subunit B [Aeromonas sp. F674P]
          Length = 371

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 137/382 (35%), Positives = 209/382 (54%), Gaps = 16/382 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   +    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFTDTL-YHYEILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 169 FRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 229 VKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 348

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 349 QEVGTLITALGCGIGRDEYNPD 370


>gi|62085694|gb|AAX63239.1| DNA gyrase subunit B [Gordonia terrae]
 gi|62085698|gb|AAX63241.1| DNA gyrase subunit B [Gordonia terrae]
          Length = 424

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 139/429 (32%), Positives = 212/429 (49%), Gaps = 39/429 (9%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+  Y +SGGLHGVGISVVNALS ++ + +      + Q ++   P +  +     
Sbjct: 1   GGKFDSDAYAVSGGLHGVGISVVNALSTKVELEIQNDGFNWEQTYTYATPGALEK--GTP 58

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------- 249
             K GT + F PDP+IF +   F+A  + +  Q  A+L+  +    +  +          
Sbjct: 59  TRKTGTTVRFWPDPEIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAIEPPGDA 118

Query: 250 -------------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
                              E A     P+   +++P GL  Y++     +  I + +   
Sbjct: 119 DGDEESGTTEAAEAVKSEEEKAAAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHTTVVGF 178

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             +  G     VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   
Sbjct: 179 TGQGTGH---EVEVAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTLTVNKYAVDK 235

Query: 350 QN---KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
           +    K+   +  DD+      ++SV + +P+F GQTKTKL + + +  V+    +   H
Sbjct: 236 KLIKDKKEDRLSGDDIREGLAAVISVKVGDPQFEGQTKTKLGNTEVKGFVQRVCSEHLGH 295

Query: 407 YLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTE 465
           +L  NP EA  +++ ++E    R+  R  R+ V RKTA     LPGKLADC  N     E
Sbjct: 296 WLEANPAEAKTIIKKIVESQRARMAARNARDLVRRKTATDIGGLPGKLADCRSNDPSKCE 355

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
           ++IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G    
Sbjct: 356 VYIVEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGIH 415

Query: 526 SQYREEDLR 534
            ++    LR
Sbjct: 416 DEFDISKLR 424


>gi|23451164|gb|AAN32687.1| DNA gyrase subunit B [Aeromonas caviae]
          Length = 371

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 137/382 (35%), Positives = 207/382 (54%), Gaps = 16/382 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++   +  G P +PL++        GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYXHTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 169 FRTALTRTLNNYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 229 VKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A   K+ ++
Sbjct: 289 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFXKMISS 348

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 349 QEVGTLITALGCGIGRDEYNPD 370


>gi|19909579|dbj|BAB86985.1| DNA gyrase subunit B [Brevundimonas intermedia]
          Length = 397

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 138/406 (33%), Positives = 215/406 (52%), Gaps = 21/406 (5%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------- 199
           +Y++SGGLHGVG+SVVNALSD L + + R       +F RG  +  L             
Sbjct: 1   SYKVSGGLHGVGVSVVNALSDWLELKIYRDGKAHQMRFERGDTVKSLVITGDAPIREDTG 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
           +   GT +TF P    F     FD   L    +  A+L+  V    +  +     +  P 
Sbjct: 61  KPLSGTEVTFYPSVTTFS-HIDFDLKTLEHRLRELAFLNSGVVIKLADQR-----HAEPV 114

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
           +   ++ GG++ +++   ++++ I  ++   + +K+G     ++ A+ W +     +  +
Sbjct: 115 EMILHYEGGVEAFVRHLDKSKTPILKDVIVIRGKKEGI---ELDLALWWNDSYHETMLCF 171

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH S  R +LTR +  Y E +    K  +S+  +D       +LSV + +
Sbjct: 172 TNNIPQRDGGTHLSAFRASLTRVMGGYIESSGAGKKEKVSVTGEDAREGLTCVLSVKVPD 231

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F+ QTK KLVS + +  VE    +    +  ++P+EA +++  +IE +  R   RK R
Sbjct: 232 PKFSSQTKDKLVSSEVRPAVEALCSEGLSTWFEEHPVEAKQIVAKIIEAASAREAARKAR 291

Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           +   RK+A+    LPGKLADC +     +ELFIVEGDSAGGSAKQARNR NQAVLPLRGK
Sbjct: 292 DLTRRKSALEISSLPGKLADCQERDPAKSELFIVEGDSAGGSAKQARNRENQAVLPLRGK 351

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVII 540
           ILNV  A  +++ ++  I  L+ ALG          + LRY K+I+
Sbjct: 352 ILNVERARFDRMLSSDLIGTLILALGTGIGRDDFNADKLRYHKIIL 397


>gi|56675150|emb|CAI34877.1| DNA gyrase subunit B [Aeromonas sp. V47]
 gi|56675152|emb|CAI34878.1| DNA gyrase subunit B [Aeromonas media]
 gi|56675154|emb|CAI34879.1| DNA gyrase subunit B [Aeromonas sp. V168]
 gi|56675156|emb|CAI34880.1| DNA gyrase subunit B [Aeromonas sp. V69]
 gi|56675160|emb|CAI34882.1| DNA gyrase subunit B [Aeromonas sp. V6]
 gi|56675162|emb|CAI34883.1| DNA gyrase subunit B [Aeromonas allosaccharophila]
          Length = 371

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 137/382 (35%), Positives = 209/382 (54%), Gaps = 16/382 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   +    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFTDTL-YHYEILAKRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 169 FRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 229 VKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 348

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 349 QEVGTLITALGCGIGRDEYNPD 370


>gi|298364142|gb|ADI79214.1| GyrB [Micromonospora sp. RtII195]
          Length = 368

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 116/373 (31%), Positives = 194/373 (52%), Gaps = 9/373 (2%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS ++ V + +   ++ Q++    P    +   +  +  G+ ++F PD
Sbjct: 1   GLHGVGVSVVNALSTKMAVEIHKSGFVWRQQYHHSKPTPLEK--GEPTDPTGSAVSFWPD 58

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P +F     FD   + +  Q  A+L+  +      ++    + G   +  F + GG+  +
Sbjct: 59  PDVFETV-DFDFQTIYRRLQEMAFLTRGLTIHLLDERVAEGEEGKLREVTFQYEGGIADF 117

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++    ++S +   +     E++G    +VE A+ W E     + ++ NTI T EGGTHE
Sbjct: 118 VRHLNASKSPMHKTVIEFGAEEEG---MSVEIAMQWNESYGESVYTFANTINTHEGGTHE 174

Query: 332 SGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
            G R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQTKTKL + 
Sbjct: 175 EGFRSALTSVVNRYGTDKKLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNT 234

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRL 449
             +  V+    +    +L +NP EA  ++ +           ++ ++   RK+ +    +
Sbjct: 235 PVKSFVQRVCNEWLVDWLDRNPAEAKIIITKASQAARARIAAQQARKLARRKSLLESGSM 294

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  
Sbjct: 295 PGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLK 354

Query: 510 NQQIMDLVQALGC 522
           N ++  L+ ALG 
Sbjct: 355 NNEVQALITALGT 367


>gi|302124418|gb|ADK93814.1| DNA gyrase subunit B [Aeromonas hydrophila]
          Length = 376

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 142/388 (36%), Positives = 215/388 (55%), Gaps = 17/388 (4%)

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D 
Sbjct: 1   SVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDT 59

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F    L K  +  ++L+  V      +++  E         F + GG+K +++   +N
Sbjct: 60  L-FHYEILAKRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVEYLNQN 111

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G R AL
Sbjct: 112 KTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTAL 168

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 169 TRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAV 228

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
           E A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLAD
Sbjct: 229 EQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLAD 288

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 289 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGT 348

Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMT 542
           L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 349 LITALGCGIGRDEYNPDKLRYHNIIIMT 376


>gi|218139463|gb|ACK57889.1| GyrB [Actinobaculum schaalii]
          Length = 412

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 130/415 (31%), Positives = 204/415 (49%), Gaps = 24/415 (5%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
            Y +SGGLHGVG+SVVNALS  +   V R   ++   +  G+P   LE+ E+      T 
Sbjct: 1   GYAVSGGLHGVGVSVVNALSTRMETIVKRDGYVWRIAYENGVPTRELERGEETTETG-TT 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------------EI 251
            TF  +P IF     +D   L K     A+L+  ++     ++               E 
Sbjct: 60  QTFWANPDIFETT-DYDFETLRKRFHQMAFLNKNLRINLIDERTSATSEGDEVTGAESET 118

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENR--SLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
           A +     +  + + GGL  Y++     +   +I+++I   + E     +  VE A+ W 
Sbjct: 119 AAEVPAKREVSYCYSGGLLDYVKFLNSMKKSEIINNDIIYFEAEDD-EKQIEVEVAMQWT 177

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISA 366
                 + ++ NTI T EGG HE G R ALT  I KYA        +  ++  DD+    
Sbjct: 178 SAYSESVNTFANTINTTEGGMHEEGFRSALTSVINKYAREHGLLKDKDPNLSGDDVREGL 237

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             ++SV +  P+F GQTKTKL + +A+  V+  +      +L  +P +A +++    +  
Sbjct: 238 TAVISVKLGNPQFEGQTKTKLGNTEARTFVQQQMYTQLSDWLDSHPGDAKEIIRKGTQAF 297

Query: 427 EERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
             R   RK RE  R+ + +    +PGKL DC+ N     E+FIVEGDSAGGSA   R+  
Sbjct: 298 AARAAARKAREATRRKSVLESASMPGKLKDCTSNKPEECEIFIVEGDSAGGSAVNGRDPE 357

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +QA++P+RGKILNV  A  ++  ++  I  L+ A G     ++  + LRY K+I 
Sbjct: 358 HQAIMPIRGKILNVEKARLDRALSSDTIQSLITAFGTGIGDEFDIDKLRYHKIIS 412


>gi|119226168|dbj|BAF41063.1| DNA gyrase subunit B [Tsukamurella inchonensis]
 gi|211927109|dbj|BAG82807.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 428

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 136/431 (31%), Positives = 215/431 (49%), Gaps = 38/431 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE----KKEKVR 200
           +  Y +SGGLHGVGISVVNALS ++ V +      + Q F               K +  
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSKVEVEIDVDGYHWQQNFHWDDKKRDSVAEDLIKGEPT 60

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA-------- 252
            + GT + F  DPK+F +   +D   + +  Q  A+L+  +    + ++ +A        
Sbjct: 61  ERTGTTVRFWADPKVFTETTHYDFETVSRRLQEMAFLNKGLTITLTDERPVAVEVPDEDT 120

Query: 253 -----------------EKYGIPEKEEFYFPGGLKTYLQTKL--ENRSLISSEIFTGKTE 293
                            E      +  F++P GL  Y++      ++S I   I + + +
Sbjct: 121 TEEAPSAAEDDVAAALAEVAPKKRERIFHYPDGLVDYVKHINARTSKSPIHGSIISFEGK 180

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350
           +KG     +E A+ W       + ++ NTI T EGGTHE G R ALT  +K YA+  +  
Sbjct: 181 EKGH---EIEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRTALTGVVKAYAKDKKLV 237

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            ++   +  DD+      ++SV + EP+F GQTKTKL + + +  V+   R+    +   
Sbjct: 238 KEKDGELSGDDIREGLAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKVCREQLQFWFDS 297

Query: 411 NPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           NP +A  +++     ++ RL  RK RE V RK+A     LPGKLADC  N     E++IV
Sbjct: 298 NPADAKTIVQKAAASAQARLAARKARELVRRKSATDIGGLPGKLADCRSNDPDKCEVYIV 357

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           EGDSAGGSAK  R+   QA+LP+RGKI+NV  A  +K+  N ++  ++ A G     ++ 
Sbjct: 358 EGDSAGGSAKSGRDSMYQAILPIRGKIINVEKARIDKVLKNAEVQSIITAFGTGIHDEFD 417

Query: 530 EEDLRYEKVII 540
              LRY+K+++
Sbjct: 418 IAKLRYKKIVL 428


>gi|19909577|dbj|BAB86984.1| DNA gyrase subunit B [Caulobacter henricii]
          Length = 400

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 137/409 (33%), Positives = 212/409 (51%), Gaps = 24/409 (5%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR--- 203
           +Y++SGGLHGVG+SVVNALSD L + + R       +F RG  +  LE       +    
Sbjct: 1   SYKVSGGLHGVGVSVVNALSDWLELKIYRDGKQHQMRFERGDTVKSLEVTGTAPIRTTGD 60

Query: 204 -------GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
                  GT +TF P    F     FD   L    +  A+L+  V    +  +     + 
Sbjct: 61  KAGQPLSGTEVTFFPSITTFS-HIDFDFKTLEHRLRELAFLNSGVVIRLADMR-----HA 114

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
            P     ++ GG++ +++   +++  +  ++   + +K+G     ++ A+ W +     +
Sbjct: 115 EPIDVTLHYEGGVEAFVRHLDKSKQPLLKDVIVIRGKKEGI---ELDLALWWNDSYHETM 171

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH S  R +LTR +  Y E +    K  ++   +D       +LSV 
Sbjct: 172 LCFTNNIPQRDGGTHLSAFRASLTRVMGGYIESSGLAKKEKVAPTGEDAREGLTCVLSVK 231

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + +P+F+ QTK KLVS + +  VE    +    +  ++P+EA  ++  +IE +  R   R
Sbjct: 232 VPDPKFSSQTKDKLVSSEVRPAVEALCSEGLSTWFEEHPVEAKMIVAKIIEAASAREAAR 291

Query: 434 KQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           K R+   RK+A+    LPGKLADC +     +ELFIVEGDSAGGSAKQARNR NQAVLPL
Sbjct: 292 KARDLTRRKSALEISSLPGKLADCQERDPAKSELFIVEGDSAGGSAKQARNRENQAVLPL 351

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVII 540
           RGKILNV  A  +++ ++  I  L+ ALG          + LRY K+I+
Sbjct: 352 RGKILNVERARFDRMLSSDLIGTLILALGTGIGRDDFNADKLRYHKIIL 400


>gi|211927107|dbj|BAG82806.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 428

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 136/431 (31%), Positives = 214/431 (49%), Gaps = 38/431 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE----KKEKVR 200
           +  Y +SGGLHGVGISVVNALS  + V +      + Q F               K +  
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSRVEVEIDVDGFHWQQNFHWDDKKRDSVAEDLIKGEPT 60

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA-------- 252
            + GT + F  DPK+F +   +D   + +  Q  A+L+  +    + ++ +A        
Sbjct: 61  ERTGTTVRFWADPKVFTETTHYDFETVSRRLQEMAFLNKGLTITLTDERPVAVEVPDEAI 120

Query: 253 -----------------EKYGIPEKEEFYFPGGLKTYLQTKL--ENRSLISSEIFTGKTE 293
                            E      +  F++P GL  Y++      ++S I   I + + +
Sbjct: 121 TEEAPSAHEDDVAAALAEVAPKKRERIFHYPDGLVDYVKHINARTSKSPIHGSIISFEGK 180

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350
           +KG     +E A+ W       + ++ NTI T EGGTHE G R ALT  +K YA+  +  
Sbjct: 181 EKGH---EIEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRTALTGVVKAYAKDKKLV 237

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            ++   +  DD+      ++SV + EP+F GQTKTKL + + +  V+   R+    +   
Sbjct: 238 KEKDGELSGDDIREGLAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKVCREQLQFWFDS 297

Query: 411 NPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           NP +A  +++     ++ RL  RK RE V RK+A     LPGKLADC  N     E++IV
Sbjct: 298 NPADAKTIVQKAAASAQARLAARKARELVRRKSATDIGGLPGKLADCRSNDPDKCEVYIV 357

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           EGDSAGGSAK  R+   QA+LP+RGKI+NV  A  +K+  N ++  ++ A G     ++ 
Sbjct: 358 EGDSAGGSAKSGRDSMYQAILPIRGKIINVEKARIDKVLKNTEVQSIITAFGTGIHDEFD 417

Query: 530 EEDLRYEKVII 540
              LRY+K+++
Sbjct: 418 IAKLRYKKIVL 428


>gi|51571605|emb|CAH18969.1| gyrase B [Corallococcus coralloides]
          Length = 382

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 131/392 (33%), Positives = 204/392 (52%), Gaps = 17/392 (4%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG++ VN LS+   V + R   ++ Q ++RG+     ++     +KRGT I F+PD ++
Sbjct: 3   GVGVTCVNFLSEWFKVRIQRAGKVYEQSYARGVANGAPQEVG-TTDKRGTMIHFKPDTQV 61

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
                 F+   L +  +  A+L+  +      ++   E         F F GG+ ++++ 
Sbjct: 62  METV-DFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD-------FKFEGGISSFVEY 113

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             + +  +  +    KTE++G    ++E A+ W +     I ++ N I T EGG+H SG 
Sbjct: 114 LNKAKEALHDKPVFIKTEREGV---SLEIAMQWNDGYDERIFTFANNINTHEGGSHLSGF 170

Query: 335 RVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           + ALTR +  YAE     + +      +D       ++SV +  P+F GQTKTKL + + 
Sbjct: 171 KAALTRTLNSYAEKGSLWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQTKTKLGNSEV 230

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRKLRLPG 451
           +  VE  + D    +L +NP  A K+   +          R+ +  V RK  +    LPG
Sbjct: 231 KGLVEQMVNDQLASFLEENPPLAKKVAAKIGDACRARLAARKARETVRRKGVLDGGGLPG 290

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC     H +EL+IVEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  EK+  + 
Sbjct: 291 KLADCQSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTSA 350

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
           +I+ L+ ALG       Y  E  RY ++I+MT
Sbjct: 351 EIVTLITALGTGIGAEDYDPEKARYHRIILMT 382


>gi|23451179|gb|AAN32694.1| DNA gyrase subunit B [Aeromonas veronii]
          Length = 371

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 137/382 (35%), Positives = 208/382 (54%), Gaps = 16/382 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   +    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFTDTL-YHYEILAKRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W       +  + N I   +GGTH  G
Sbjct: 112 YLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNHAYQEGVYWFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 169 FRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 229 VKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 348

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 349 QEVGTLITALGCGIGRDEYNPD 370


>gi|66474597|gb|AAY46868.1| GyrB [Aeromonas veronii]
          Length = 372

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 137/383 (35%), Positives = 210/383 (54%), Gaps = 17/383 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD L +T+ RQ  ++ Q +  G P +PL++        GT + F P P 
Sbjct: 1   HGVGVSVVNALSDTLKLTIRRQGHVYEQTYKLGEPQAPLKQIGDAT-TTGTEVRFWPSPT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L K  +  ++L+  V    S +++  E         F + GG+K +++
Sbjct: 60  IFSDTL-FHYETLAKRLRELSFLNSGVSIVLSDERDGREIN-------FCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              ++++ I  ++F   TE  G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQSKTPIHPKVFHFSTEHDGI---GVEVAMQWNDGYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
            R ALTR +  Y +    ++  +  +   DD+    + ++SV + +P+F+ QTK KLVS 
Sbjct: 169 FRTALTRTLNTYMDKEDYSKKAKMSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSS 228

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRL 449
           + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK R    RK A+    L
Sbjct: 229 EVKTAVEQAMGEKMAEFLLENPSDAKIVVNKIIDAARAREAARKAREMTRRKGALDIAGL 288

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ +
Sbjct: 289 PGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMIS 348

Query: 510 NQQIMDLVQALGCRTRSQYREED 532
           +Q++  L+ ALGC         D
Sbjct: 349 SQEVGTLITALGCGIGRDEYNPD 371


>gi|66474583|gb|AAY46861.1| GyrB [Aeromonas sp. 12m]
          Length = 371

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 138/382 (36%), Positives = 209/382 (54%), Gaps = 16/382 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPHAPLKQIGDSTG-TGTEVRFWPSPT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFSDTL-FHYEILAKRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQNKTAIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 169 FRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 229 VKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 348

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 349 QEVGTLITALGCGIGRDEYNPD 370


>gi|48425513|pdb|1S14|A Chain A, Crystal Structure Of Escherichia Coli Topoisomerase Iv
           Pare 24kda Subunit
 gi|48425514|pdb|1S14|B Chain B, Crystal Structure Of Escherichia Coli Topoisomerase Iv
           Pare 24kda Subunit
          Length = 194

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 73/220 (33%), Positives = 110/220 (50%), Gaps = 29/220 (13%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  L V+D+GRG+PV+ HP+      +E+IL                        IS
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILC-----------------------IS 94

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219
           VVNALS  + V V R   +++  F  G  +  L+      +   GT + F PD + F D 
Sbjct: 95  VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 153

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
             F  +RL  + ++KA L   V+  +  +    E+    +
Sbjct: 154 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQ 193


>gi|22761981|dbj|BAC11777.1| gyrase B [Helicobacter pylori]
          Length = 389

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 145/399 (36%), Positives = 222/399 (55%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN--K 202
           N TY++SGGLHGVG+SVVNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +N  +
Sbjct: 1   NDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKNAKE 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT I F PD  +      F A  L K  +  AYL+  +K  +  +K          +E 
Sbjct: 61  SGTTIEFFPDESVMEVV-EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLQET 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
           +++  GLK +++   + + L++  I     +++      V  A A  + N    S+ N I
Sbjct: 113 YFYEDGLKQFVKDSAK-KELLTPIISFKSMDEETHTSIEVALAYAD-DYNENTLSFVNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T EGGTHE+G ++ L++ I +Y +     R    IS+D+    + ++S+ + EP F GQ
Sbjct: 171 KTSEGGTHEAGFKMGLSKAILQYIDTNIKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TK+KL S   +  V   + D    +L +NP EA  +    +  ++ R   +K RE   +K
Sbjct: 231 TKSKLGSSYVRALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKK 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC       +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  
Sbjct: 291 DNLSVGTLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +   KI  +++I +++ A GC  +  +  E LRY K+II
Sbjct: 351 SHLSKILKSEEIKNMITAFGCGIQESFDIERLRYHKIII 389


>gi|294963318|gb|ADF50146.1| DNA gyrase subunit B [Bacillus pumilus]
 gi|294963328|gb|ADF50151.1| DNA gyrase subunit B [Bacillus pumilus]
          Length = 356

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 129/364 (35%), Positives = 195/364 (53%), Gaps = 13/364 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L VTV R   I  Q+F RG+P   LE   +  +  GT   F PDP+IF +   F
Sbjct: 1   NALSTTLDVTVYRDGKIHYQQFKRGVPAGDLEIIGET-DVTGTTTHFVPDPEIFTETIEF 59

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L    +  A+L+  V       +E  E+        + + GG+K+Y++    ++ +
Sbjct: 60  DYDTLANRVRELAFLTKGVNIIIEDLREGKERRNE-----YCYEGGIKSYVEHLNRSKEV 114

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           +  E    + EK G    T+E A+ + +       S+ N I T EGGTHE+G +  LTR 
Sbjct: 115 VHEEPVYIEGEKDGI---TIEVALQYNDSYSSNIYSFANNINTYEGGTHEAGFKTGLTRV 171

Query: 342 IKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  YA      +    ++  +D+      I+S+   +P+F GQTKTKL + +A+   ++ 
Sbjct: 172 INDYARKNGVFKDGDSNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDSL 231

Query: 400 LRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
             +  + +L++NP  A K++E  V+        ++ +    RK+A+    LPGKLADCS 
Sbjct: 232 FSEALEKFLLENPDAAKKIVEKGVMAARARMAAKKARELTRRKSALEVSSLPGKLADCSS 291

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  ++ 
Sbjct: 292 KDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMIT 351

Query: 519 ALGC 522
           ALG 
Sbjct: 352 ALGT 355


>gi|146164149|gb|ABQ08737.1| DNA gyrase subunit beta [Aeromonas veronii]
          Length = 367

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 137/379 (36%), Positives = 208/379 (54%), Gaps = 16/379 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 169 FRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 229 VKTAVEQAMGEKLADFLLENPSDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 348

Query: 511 QQIMDLVQALGCRTRSQYR 529
           Q++  L+ ALGC       
Sbjct: 349 QEVGTLITALGCGIGRDEY 367


>gi|22761989|dbj|BAC11781.1| gyrase B [Helicobacter pylori]
          Length = 389

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 145/399 (36%), Positives = 222/399 (55%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NK 202
           N TY++SGGLHGVG+SVVNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +   +
Sbjct: 1   NDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKE 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT I F PD  +      F A  L K  +  AYL+  +K  +  +K          +E 
Sbjct: 61  SGTTIEFFPDESVMEVV-EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLQET 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
           +++  GLK +++   + + L++  I     +++      V  A A  + N    S+ N I
Sbjct: 113 YFYEDGLKQFVKDSAK-KELLTPVISFKSMDEETHTSIEVALAYAD-DYNENTLSFVNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T EGGTHE+G ++ L++ I +Y +     R    IS+D+    + ++S+ + EP F GQ
Sbjct: 171 KTSEGGTHEAGFKMGLSKAILQYIDTNIKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TK+KL S  A+  V   + D    +L +NP EA  +    +  ++ R   +K RE   +K
Sbjct: 231 TKSKLGSSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKK 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC       +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  
Sbjct: 291 DNLSVGTLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +   KI  +++I +++ A GC  +  +  E LRY K+II
Sbjct: 351 SHLSKILKSEEIKNMITAFGCGIQESFDIERLRYHKIII 389


>gi|323146970|gb|ADX32778.1| DNA gyrase B subunit [endophytic bacterium 9(2011)]
 gi|323146986|gb|ADX32786.1| DNA gyrase B subunit [endophytic bacterium 16(2011)]
          Length = 231

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 84/243 (34%), Positives = 129/243 (53%), Gaps = 27/243 (11%)

Query: 79  SEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILT 135
            EV+DN++DE +AGY N I+V +  +  +++ DNGRG+P          P +S  EI++T
Sbjct: 1   FEVLDNSIDEALAGYCNDIQVIIHADNSISITDNGRGVPTGLKMDDKHEPKRSAAEIVMT 60

Query: 136 TLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------ 189
            LHAGGKFD ++Y++SGGLHGVG+S VNALS  L +TV R       +F RG+P      
Sbjct: 61  ELHAGGKFDQNSYKVSGGLHGVGVSCVNALSAWLRLTVRRDGKKHFMEFHRGVPQNRVIE 120

Query: 190 ------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
                 +SP++   +  N RGT + F  D  IFG+   +    L K  +  ++L+  V+ 
Sbjct: 121 EIGGIAVSPIQVVGETEN-RGTEVHFMADETIFGN-VEYHYDILAKRIRELSFLNNGVRI 178

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
             +  +   E         F F GG+K +++   + +S++   IF    EK G     VE
Sbjct: 179 RLTDQRSGKEDD-------FAFVGGVKGFVEYINKTKSVLHPTIFHVSGEKDGV---GVE 228

Query: 304 WAI 306
            A+
Sbjct: 229 VAM 231


>gi|66474581|gb|AAY46860.1| GyrB [Aeromonas sp. 1m]
 gi|66474591|gb|AAY46865.1| GyrB [Aeromonas sp. 19m]
          Length = 371

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 138/382 (36%), Positives = 208/382 (54%), Gaps = 16/382 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPHAPLKQIGDSTG-TGTEVRFWPSPT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFSDTL-FHYEILAKRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I   +F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQNKTAIHPNVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 169 FRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 229 VKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 348

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 349 QEVGTLITALGCGIGRDEYNPD 370


>gi|319958754|gb|ADV90547.1| DNA gyrase subunit B [Bacillus pumilus]
          Length = 365

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 134/374 (35%), Positives = 201/374 (53%), Gaps = 13/374 (3%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LS  L VTV R   I  Q+F RG+P+  LE   +  +  GT   F PDP+IF +   FD 
Sbjct: 1   LSTTLDVTVYRDGKIHYQQFKRGVPVGDLEVIGET-DVTGTTTHFVPDPEIFTETIEFDY 59

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             L    +  A+L+  V       +E  E+        + + GG+K+Y++    ++ ++ 
Sbjct: 60  DTLANRVRELAFLTKGVNIIIEDLREGKERRNE-----YCYEGGIKSYVEHLNRSKEVVH 114

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
            E    + EK G    TVE A+ + +     I S+ N I T EGGTHE+G +  LTR I 
Sbjct: 115 EEPVYIEGEKDGI---TVEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGLTRVIN 171

Query: 344 KYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            YA      +    ++  +D+      I+S+   +P+F GQTKTKL + +A+   ++   
Sbjct: 172 DYARKNGVFKDGDANLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDSLFS 231

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNI 460
           +  + +L++NP  A K++E  +  +  R+  +K RE   RK+A+    LPGKLADCS   
Sbjct: 232 EALEKFLLENPDSAKKIVEKGLMAARARMAAKKARELTRRKSALEVSSLPGKLADCSSKD 291

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  ++ AL
Sbjct: 292 PSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITAL 351

Query: 521 GCRTRSQYREEDLR 534
           G      +  E  R
Sbjct: 352 GTGIGEDFTLEKAR 365


>gi|23451157|gb|AAN32684.1| DNA gyrase subunit B [Aeromonas hydrophila]
          Length = 371

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 137/382 (35%), Positives = 208/382 (54%), Gaps = 16/382 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++   +  G P +PL++        GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYXXTYHLGEPQAPLKQIGDSTG-TGTEVRFWPRPT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFSDTL-FHYEILAKRLRQLSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 169 FRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 229 VKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 348

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 349 QEVGTLITALGCGIGRDEYNPD 370


>gi|182407069|gb|ACB87634.1| DNA gyrase B subunit [Shewanella sp. MB4]
          Length = 382

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 137/388 (35%), Positives = 209/388 (53%), Gaps = 15/388 (3%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS++L +T+ R+  ++ Q ++ G P  P+++     N  GT I F P
Sbjct: 6   GGLHGVGVSVVNALSEKLQLTIRREGKLYEQFYTMGEPDEPIKEIGDATN-TGTEIRFWP 64

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F D   F    L K  +  ++L+  V      +++  +       E F + GG+  
Sbjct: 65  SSQTFSDV-EFHFDILAKRVRELSFLNSGVGIRLVDERDNKD-------EFFKYEGGISA 116

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++     N++ ++ EIF    E++     TVE A+ W +     I  + N I   +GGTH
Sbjct: 117 FVDYLNINKTPVNKEIFHFVQERED--GITVEVAMQWNDGFQENIFCFTNNIPQRDGGTH 174

Query: 331 ESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  Y +      K   S   DD       ++SV + +P+F+ QTK KLV
Sbjct: 175 LAGFRSALTRNLNTYMDREGFNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLV 234

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447
           S + +  V+  + +    YL++NP E   ++  +I+ +  R   RK R    RK A+   
Sbjct: 235 SSEVKTAVKQTMGEKLGDYLLENPNETKLIVGKIIDAARAREAARKAREMTRRKGALDLG 294

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +      E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+
Sbjct: 295 GLPGKLADCQEKDPALFEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 354

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRY 535
            ++Q++  L+ ALGC       + + R 
Sbjct: 355 LSSQEVATLITALGCGIGRDEYDPERRV 382


>gi|66474585|gb|AAY46862.1| GyrB [Aeromonas sp. 13m]
          Length = 371

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 138/382 (36%), Positives = 209/382 (54%), Gaps = 16/382 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFSDTL-FHYEILAKRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQNKTPIQPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 169 FRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 229 VKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 348

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 349 QEVGTLITALGCGIGRDEYNPD 370


>gi|23429496|gb|AAN11317.1| DNA gyrase subunit beta [Aeromonas veronii]
 gi|23451166|gb|AAN32688.1| DNA gyrase subunit B [Aeromonas veronii bv. veronii]
 gi|24021181|gb|AAN40981.1| DNA gyrase subunit beta [Aeromonas veronii]
 gi|56675166|emb|CAI34885.1| DNA gyrase subunit B [Aeromonas sp. JF2638]
 gi|56675168|emb|CAI34886.1| DNA gyrase subunit B [Aeromonas sp. F474]
 gi|56675170|emb|CAI34887.1| DNA gyrase subunit B [Aeromonas sp. JF2689]
 gi|66474573|gb|AAY46856.1| GyrB [Aeromonas veronii bv. sobria]
 gi|66474575|gb|AAY46857.1| GyrB [Aeromonas veronii bv. sobria]
 gi|66474599|gb|AAY46869.1| GyrB [Aeromonas veronii]
 gi|124377264|emb|CAM32365.1| DNA gyrase subunit B [Aeromonas veronii]
          Length = 371

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 138/382 (36%), Positives = 209/382 (54%), Gaps = 16/382 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPA 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFSDTL-FHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------AHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 169 FRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 229 VKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 348

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 349 QEVGTLITALGCGIGRDEYNPD 370


>gi|3021634|dbj|BAA25337.1| DNA gyrase B subunit [Pseudomonas putida]
          Length = 381

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 144/393 (36%), Positives = 212/393 (53%), Gaps = 17/393 (4%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P +P++         GT+I F+P
Sbjct: 1   GGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQAPMKVVGD-SETTGTQIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       EEF + GGL+ 
Sbjct: 60  SSETFKNIH-FSWDILAKRIRELSFLNSGVGILLKDERSGKE-------EEFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTH 330
           +++    N++ ++         + G     VE A+ W +   E    + N I   +GGTH
Sbjct: 112 FVEYLNTNKTPVNEVFHFSVQREDGV---GVEIALQWNDSFTENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD+      I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSALTRNLYTYIEQEGLSKKNKVATTGDDIREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447
           S +    VE  +   F  +L++ P EA  ++  +I+ +  R   RK R    RK A+   
Sbjct: 229 SSEVNLAVEQEMGKYFSDFLLEKPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+
Sbjct: 289 GLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKM 348

Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            ++Q++  L+ ALGC   R +Y  E LRY  +I
Sbjct: 349 ISSQEVGTLITALGCGIGREEYNIEKLRYHHII 381


>gi|22761959|dbj|BAC11766.1| gyrase B [Helicobacter pylori]
          Length = 389

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 144/399 (36%), Positives = 221/399 (55%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NK 202
           N TY++SGGLHGVG+SVVNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +   +
Sbjct: 1   NDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKE 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT I F PD  +      F A  L K  +  AYL+  +K  +  +K          +E 
Sbjct: 61  SGTTIEFFPDESVMEVV-EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLQET 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
           +++  GLK +++   + + L++  I     +++      V  A A  + N    S+ N I
Sbjct: 113 YFYEDGLKQFVKDSAK-KELLTPVISFKSMDEETHTSIEVALAYAD-DYNENTLSFVNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T EGGTHE+G ++ L++ I +Y +     R    IS+D+    + ++S+ + EP F GQ
Sbjct: 171 KTSEGGTHEAGFKMGLSKAILQYIDTNIKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TK+KL S   +  V   + D    +L +NP EA  +    +  ++ R   +K RE   +K
Sbjct: 231 TKSKLGSSYVRALVSKLVYDKIYQFLEENPNEAKIIANKALLAAKAREASKKARELTRKK 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC       +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  
Sbjct: 291 DNLSVGTLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +   KI  +++I +++ A GC  +  +  E LRY K+II
Sbjct: 351 SHLSKILKSEEIKNMITAFGCGIQESFDIERLRYHKIII 389


>gi|3021648|dbj|BAA25344.1| DNA gyrase B subunit [Pseudomonas chlororaphis]
          Length = 381

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 140/393 (35%), Positives = 209/393 (53%), Gaps = 17/393 (4%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P +P+          GT+I F+ 
Sbjct: 1   GGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGD-SETTGTQIHFKA 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SSETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTH 330
           +++    N++ ++         + G     VE A+ W +   E    + N I   +GGTH
Sbjct: 112 FVEYLNTNKTAVNQVFHFNVQREDGI---GVEIALQWNDSFNENLQCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAGEGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447
           S + +   E  +   F  +L++NP EA  ++  +++ +  R   RK R    RK A+   
Sbjct: 229 SSEVKTAFEQEMGKYFSDFLLENPNEAKLVVGKMLDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+
Sbjct: 289 GLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKM 348

Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539
            ++Q++  L+ ALGC   R +Y  + LRY  +I
Sbjct: 349 ISSQEVGTLITALGCGIGREEYNIDKLRYHNII 381


>gi|209863311|gb|ACI88755.1| DNA gyrase subunit B [Aeromonas sp. JH118]
          Length = 370

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 138/380 (36%), Positives = 209/380 (55%), Gaps = 16/380 (4%)

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P
Sbjct: 3   LHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSP 61

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF D   F    L K  +  ++L+  V      +++  E         F + GG+K ++
Sbjct: 62  AIFSDTL-FHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------AHFCYEGGIKAFV 113

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  
Sbjct: 114 EYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLV 170

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS 
Sbjct: 171 GFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSS 230

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    L
Sbjct: 231 EVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGL 290

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ +
Sbjct: 291 PGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMIS 350

Query: 510 NQQIMDLVQALGCRTRSQYR 529
           +Q++  L+ ALGC       
Sbjct: 351 SQEVGTLITALGCGIGRDEY 370


>gi|209863305|gb|ACI88752.1| DNA gyrase subunit B [Aeromonas sp. JH117]
          Length = 368

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 138/380 (36%), Positives = 209/380 (55%), Gaps = 16/380 (4%)

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P
Sbjct: 1   LHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSP 59

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF D   F    L K  +  ++L+  V      +++  E         F + GG+K ++
Sbjct: 60  AIFSDTL-FHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------AHFCYEGGIKAFV 111

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  
Sbjct: 112 EYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLV 168

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS 
Sbjct: 169 GFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSS 228

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    L
Sbjct: 229 EVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGL 288

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ +
Sbjct: 289 PGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMIS 348

Query: 510 NQQIMDLVQALGCRTRSQYR 529
           +Q++  L+ ALGC       
Sbjct: 349 SQEVGTLITALGCGIGRDEY 368


>gi|319958734|gb|ADV90537.1| DNA gyrase subunit B [Bacillus subtilis]
          Length = 366

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 132/374 (35%), Positives = 201/374 (53%), Gaps = 13/374 (3%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LS EL VTV R   I  Q + RG+P++ LE   +  +  GT   F PDP+IF +   +D 
Sbjct: 1   LSTELDVTVHRDGKIHRQTYKRGVPVTDLEIIGET-DHTGTTTHFVPDPEIFSETTEYDY 59

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             L    +  A+L+  V       +E  E+        +++ GG+K+Y++    ++ ++ 
Sbjct: 60  DLLANRVRELAFLTKGVNITIEDKREGQERKNE-----YHYEGGIKSYVEYLNRSKEVVH 114

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
            E    + EK G    TVE A+ + +     I S+ N I T EGGTHE+G +  LTR I 
Sbjct: 115 EEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVIN 171

Query: 344 KYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            YA      +    ++  DD+      I+S+   +P+F GQTKTKL + +A+   +    
Sbjct: 172 DYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFS 231

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNI 460
              + ++++NP  A K+++  +  +  R+  +K RE   RK+A+    LPGKLADCS   
Sbjct: 232 TAMETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKD 291

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  ++ AL
Sbjct: 292 PSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITAL 351

Query: 521 GCRTRSQYREEDLR 534
           G      +  E  R
Sbjct: 352 GTGIGEDFNLEKAR 365


>gi|209863331|gb|ACI88765.1| DNA gyrase subunit B [Aeromonas sp. JH69]
          Length = 367

 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 137/379 (36%), Positives = 208/379 (54%), Gaps = 16/379 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFSDTL-FHYEILAKRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 169 FRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 229 VKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 348

Query: 511 QQIMDLVQALGCRTRSQYR 529
           Q++  L+ ALGC       
Sbjct: 349 QEVGTLITALGCGIGRDEY 367


>gi|300607832|emb|CBV35680.1| DNA gyrase B subunit [Pseudomonas sp. ML1]
          Length = 378

 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 138/387 (35%), Positives = 204/387 (52%), Gaps = 16/387 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS EL +TV R   I+ Q +  G+P  P++   +     GT+I F
Sbjct: 1   VSGGLHGVGVSVVNALSKELILTVRRSGKIWEQTYVHGVPQEPMKIVGE-SETTGTQIHF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           RP  + F +   F      K  +  ++L+  V      ++   E       E F + GGL
Sbjct: 60  RPSAETFKNIH-FSWDIXAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGL 111

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           + +++    N++ ++         + G     VE A+ W +     +  + N I   +GG
Sbjct: 112 RAFVEYLNTNKTPVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGG 168

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH  G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK K
Sbjct: 169 THLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDK 228

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIR 445
           LVS + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+ 
Sbjct: 229 LVSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALD 288

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +
Sbjct: 289 IAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFD 348

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREED 532
           K+ ++Q++  L+ ALGC         D
Sbjct: 349 KMISSQEVGTLITALGCGIGRDEYNID 375


>gi|117650769|gb|ABK54359.1| DNA gyrase subunit B [Brevundimonas diminuta]
          Length = 388

 Score =  193 bits (491), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 136/397 (34%), Positives = 203/397 (51%), Gaps = 21/397 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-------RNKRG 204
           GGLHGVG+SVVNALSD L + + R     S +F RG  +  L             R   G
Sbjct: 1   GGLHGVGVSVVNALSDWLELVIYRDGKKHSVRFERGETVRSLAVVGDAPMREDKGRLLTG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF P    F     FD   L    +  A+L+  V    S  +        P +   +
Sbjct: 61  TEVTFFPSVTTFS-HIDFDLKTLEHRLRELAFLNSGVVIKLSDHR-----GAEPIEIMLH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG++ +++   ++++ I  ++   + +K G     ++ A+ W +     +  + N I 
Sbjct: 115 YEGGVEAFVRHLDKSKTPILKDVIVIRGQKDGI---ELDLALWWNDSYHETMLCFTNNIP 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH S  R +LTR +  Y E +    K  ++   +D       +LSV + +P+F+ 
Sbjct: 172 QRDGGTHLSAFRASLTRVMGSYIESSGLAKKEKVAPTGEDAREGLTCVLSVKVPDPKFSS 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTK KLVS + +  VE+   +    +  ++P+EA  ++  +IE +  R   RK R+   R
Sbjct: 232 QTKDKLVSSEVRPAVESLCSEGLATWFEEHPVEAKMIVSKIIEAASAREXARKARDLTRR 291

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +ELFIVEGDSAGGSAKQARNR NQAVLPLRGKILNV 
Sbjct: 292 KLALEISSLPGKLADCQERDPAKSELFIVEGDSAGGSAKQARNRENQAVLPLRGKILNVE 351

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYE 536
            A  +++ ++  I  L+ ALG          + LRY 
Sbjct: 352 RARFDRMLSSDLIGTLILALGTGIGRDDFNADKLRYH 388


>gi|22761975|dbj|BAC11774.1| gyrase B [Helicobacter pylori]
          Length = 389

 Score =  193 bits (491), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 145/399 (36%), Positives = 222/399 (55%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NK 202
           N TY++SGGLHGVG+SVVNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +   +
Sbjct: 1   NDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKE 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT I F PD  +      F A  L K  +  AYL+  +K  +  +K          +E 
Sbjct: 61  SGTTIEFFPDESVMEVV-EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLQET 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
           +++  GLK +++   + + L++  I     +++      V  A A  + N    S+ N I
Sbjct: 113 YFYEDGLKQFVKDSAK-KELLTPVISFKSMDEETHTSIEVALAYAD-DYNENTLSFVNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T EGGTHE+G ++ L++ I +Y +     R    IS+D+    + ++S+ + EP F GQ
Sbjct: 171 KTSEGGTHEAGFKMGLSKAILQYIDENIKTRETRPISEDIKEGLIAVVSLKMSEPLFEGQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TK+KL S  A+  V   + D    +L +NP EA  +    +  ++ R   +K RE   +K
Sbjct: 231 TKSKLGSSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKK 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC       +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  
Sbjct: 291 DNLSVGTLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +   KI  +++I +++ A GC  +  +  E LRY K+II
Sbjct: 351 SHLSKILKSEEIKNMITAFGCGIQESFDIERLRYHKIII 389


>gi|35210349|dbj|BAC92686.1| gyrase B subunit [Sulfobacillus acidophilus]
          Length = 388

 Score =  193 bits (491), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 143/400 (35%), Positives = 210/400 (52%), Gaps = 16/400 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG+SVVNALS EL  T      IF Q +++G PL  L +     ++ G
Sbjct: 1   GGGYKVSGGLHGVGLSVVNALSKELTATSRFNGGIFVQHYAQGKPLDALTRIGDT-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
             + F PDP IF +   F    +    + +A+L+  V      +    E         ++
Sbjct: 60  FEVVFLPDPDIFEEVR-FSFETIANRLREQAFLNSGVLLELKDEASGRE-------MRYH 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+ +++Q    NR +I  +      E+ G     VE A+ + +   E   ++ NTI 
Sbjct: 112 YTGGVVSFVQYLNLNRDVIHPKPIAFSAERDGVF---VETALQYNDSYTETLFTFANTIR 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAG 381
           T EGG+HE+G + ALTR    Y       +    ++  DD+      ILSV + EP+F G
Sbjct: 169 TLEGGSHEAGFKAALTRVCNDYGRKLGLLKDADNNLSGDDVREGLTMILSVKLPEPQFEG 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + + +   E  + +    Y  +NP  A ++LE  I  +  R   RK RE   R
Sbjct: 229 QTKTKLGNSEVRGITEAIVAEGLSTYFEENPSIAKRILEKAIAAARAREAARKARELTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+ +    LPGKL DC+      +ELF+VEGDSAGGSAKQ R+R  QAVLPLRGKILNV 
Sbjct: 289 KSVLESSSLPGKLTDCTSKDPAESELFLVEGDSAGGSAKQGRDRQFQAVLPLRGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +KI  N++I  ++ A+G     ++     RY +++I
Sbjct: 349 RARLDKILGNEEIRAMITAIGTGIGDEFDLTKARYHRIVI 388


>gi|211927045|dbj|BAG82775.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 421

 Score =  193 bits (491), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 129/427 (30%), Positives = 207/427 (48%), Gaps = 37/427 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS ++ V +      +SQ +    P   ++ +        
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTKVEVDINVDGYRWSQTYEHAKPGPLVQGEPTTETGT- 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------ 258
             + F  DP+IF     ++   + +  Q  A+L+  +    + ++   ++          
Sbjct: 60  -TVRFWADPEIFETTT-YNFETVARRLQEMAFLNKGLTITLTDERVAEDEVTEDVVPVTA 117

Query: 259 ---------------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                                +   +++PGGL+ Y++     +  I + +     +  G 
Sbjct: 118 EAPKTATEIEEEAAAPKAPKVKSRVYHYPGGLEDYVRFINRTKQAIHNSVVGFTAKGTGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRA 354
               +E A+ W       + ++ NTI T EGGTHE G R ALT  +KKY   +     + 
Sbjct: 178 ---ELEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTSVVKKYAKDKKLVKDKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             +  DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +
Sbjct: 235 PELTGDDIREGLAAIISVKVAEPQFEGQTKTKLGNTEVKSFVQKACNENIAHWFEANPAD 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   +  ++ R   RK RE V RK+A     LPGKLADC  N     E++IVEGDS
Sbjct: 295 AKTIVTKAVSSAQARTAARKARELVRRKSATDIGGLPGKLADCRSNDPSKCEIYIVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    L
Sbjct: 355 AGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDISKL 414

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 415 RYHKIVL 421


>gi|83017302|dbj|BAE53568.1| DNA gyrase B [Microbulbifer hydrolyticus]
          Length = 389

 Score =  193 bits (491), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 144/401 (35%), Positives = 221/401 (55%), Gaps = 17/401 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           ++TY++SGGLHGVG+SVVNALS EL +T+ R   I  Q +  G+P++PL           
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSAELKLTIRRGGKIHEQVYRHGVPVAPLSVVGDTDTTGT 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
             + F+P  + F +   F   +L K  +  ++L+  V+     ++   E       E + 
Sbjct: 61  -TVHFKPSAETFTNI-EFHFEQLAKRLRELSFLNSGVRIVLRDERSGKE-------EVYE 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL+ +++    N++ I+  +      + G    +VE A+ W +     I  Y N I 
Sbjct: 112 YEGGLRAFVEFLNLNKNPINKVLHFQNQREDGI---SVEVALQWNDSFQENIYCYTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  +S   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLAGFRAALTRGLNNYIEKEGVGKKDKVSTTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  +   F+ YL++NP EA  ++  +I+ +  R   RK R    R
Sbjct: 229 QTKDKLVSSEVKPAVEQEMGLSFNDYLLENPQEAKAIVGKMIDAARAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC Q     +E+++ EGDSAGGSAKQ R+R  QA+LPL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQQKDPALSEIYLAEGDSAGGSAKQGRDRRTQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
            A  +K+ ++ ++  L+ ALGC   +S++  + LRY  +II
Sbjct: 349 KARFDKMLSSAEVGTLITALGCGIGKSEFNPDKLRYHSIII 389


>gi|75765928|pdb|1ZXM|A Chain A, Human Topo Iia AtpaseAMP-Pnp
 gi|75765929|pdb|1ZXM|B Chain B, Human Topo Iia AtpaseAMP-Pnp
 gi|75765930|pdb|1ZXN|A Chain A, Human Dna Topoisomerase Iia AtpaseADP
 gi|75765931|pdb|1ZXN|B Chain B, Human Dna Topoisomerase Iia AtpaseADP
 gi|75765932|pdb|1ZXN|C Chain C, Human Dna Topoisomerase Iia AtpaseADP
 gi|75765933|pdb|1ZXN|D Chain D, Human Dna Topoisomerase Iia AtpaseADP
          Length = 400

 Score =  193 bits (491), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 75/406 (18%), Positives = 148/406 (36%), Gaps = 48/406 (11%)

Query: 50  RILEGLEPVRMRPGMYIGGTD----------------------EKALHHLFSEVIDNAMD 87
           +    LE + +RP  YIG  +                         L+ +F E++ NA D
Sbjct: 7   QKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKIFDEILVNAAD 66

Query: 88  EVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
                   + I V++D  N  +++ +NG+GIPV  H K        +I   L     +D+
Sbjct: 67  NKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEH-KVEKMYVPALIFGQLLTSSNYDD 125

Query: 146 STYEISGGLHGVGISVVNALSDELHVTV--ARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
              +++GG +G G  + N  S +  V         +F Q +   +  +   + +    + 
Sbjct: 126 DEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEMELKPFNGED 185

Query: 204 GTRITFRPDPKIFGDK--AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
            T ITF+PD   F  +       A +++     A  +  VK   + +K   +        
Sbjct: 186 YTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNKLPVK-------- 237

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
                 G ++Y+   L+++   +        E+        E  +   E+  +  S+ N+
Sbjct: 238 ------GFRSYVDMYLKDKLDETGNSLKVIHEQVNH---RWEVCLTMSEKGFQQISFVNS 288

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
           I T +GG H   +   +   +       +NK  +++ +  +       ++  I  P F  
Sbjct: 289 IATSKGGRHVDYVADQIVTKLVD-VVKKKNKGGVAVKAHQVKNHMWIFVNALIENPTFDS 347

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
           QTK  +            L + F    +        +L WV  +++
Sbjct: 348 QTKENMTLQPKSFGSTCQLSEKFIKAAIG-CGIVESILNWVKFKAQ 392


>gi|308152541|dbj|BAJ22249.1| DNA gyrase subunit B [Gordonia hydrophobica]
          Length = 419

 Score =  193 bits (491), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 135/424 (31%), Positives = 211/424 (49%), Gaps = 33/424 (7%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS ++ + + R    +SQ ++   P    E      ++ G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTKVQLDIKRNGANWSQTYTHAEPGPLEE--GAPTDETG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI------------- 251
           T ++F  DP IF     F+   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTVSFWADPNIFETT-EFNIETIARRLQEMAFLNKGLTITLTDERIHEAVLEAEAEETED 117

Query: 252 -----------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                      A+     +   +++P GL  Y++  L NR+             KGT   
Sbjct: 118 GDASIKTEEQKADAVAKVKTRVYHYPDGLVDYIKH-LNNRTKAPIHKSVIGITAKGTGH- 175

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISI 357
            VE A+ W E     + ++ NTI T EGGTHE G R ALT  + KYA   +   ++   +
Sbjct: 176 EVEIAMQWNEGFAESVHTFANTINTAEGGTHEEGFRAALTSTVNKYAFDKKLIKEKDGKL 235

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      ++SV + +P+F GQTKTKL + + +  V+    +    +   NP EA  
Sbjct: 236 SGDDIREGLAAVISVKVADPQFEGQTKTKLGNTEVKSFVQKTCNEHLALWFDANPAEAKT 295

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++    +  + RL  R+ R+ V RKTA     LPGKLADC  N     E++IVEGDSAGG
Sbjct: 296 IIRKAADSQQARLAARRARDLVRRKTATDIGGLPGKLADCRSNDPSKCEVYIVEGDSAGG 355

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LP+RGKI+NV  A  +++  N ++  ++ A G     ++    LRY 
Sbjct: 356 SAKSGRDSMYQAILPIRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDIAKLRYH 415

Query: 537 KVII 540
           K+++
Sbjct: 416 KIVL 419


>gi|22761997|dbj|BAC11785.1| gyrase B [Helicobacter pylori]
          Length = 389

 Score =  193 bits (491), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 145/399 (36%), Positives = 222/399 (55%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NK 202
           N TY++SGGLHGVG+SVVNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +   +
Sbjct: 1   NDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKE 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT I F PD  +      F A  L K  +  AYL+  +K  +  +K          +E 
Sbjct: 61  SGTTIEFFPDESVMEVV-EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLQEI 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
           +++  GLK +++   + + L++  I     +++      V  A A  + N    S+ N I
Sbjct: 113 YFYEDGLKQFVKDSAK-KELLTPIISFKSMDEETRTSIEVALAYAD-DYNENTLSFVNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T EGGTHE+G ++ L++ I +Y +     R    IS+D+    + ++S+ + EP F GQ
Sbjct: 171 KTSEGGTHEAGFKMGLSKAILQYIDENIKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TK+KL S  A+  V   + D    +L +NP EA  +    +  ++ R   +K RE   +K
Sbjct: 231 TKSKLGSSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKK 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC       +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  
Sbjct: 291 DNLSVGTLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +   KI  +++I +++ A GC  +  +  E LRY K+II
Sbjct: 351 SHLSKILKSEEIKNMITAFGCGIQESFDIERLRYHKIII 389


>gi|22761993|dbj|BAC11783.1| gyrase B [Helicobacter pylori]
          Length = 389

 Score =  193 bits (491), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 145/399 (36%), Positives = 222/399 (55%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NK 202
           N TY++SGGLHGVG+SVVNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +   +
Sbjct: 1   NDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKE 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT I F PD  +      F A  L K  +  AYL+  +K  +  +K          +E 
Sbjct: 61  SGTTIEFFPDESVMEVV-EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLQET 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
           +++  GLK +++   + + L++  I     +++      V  A A  + N    S+ N I
Sbjct: 113 YFYEDGLKQFVKDSAK-KELLTPVISFKSMDEETCTSIEVALAYAD-DYNENTLSFVNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T EGGTHE+G ++ L++ I +Y +     R    IS+D+    + ++S+ + EP F GQ
Sbjct: 171 KTSEGGTHEAGFKMGLSKAILQYIDENIKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TK+KL S  A+  V   + D    +L +NP EA  +    +  ++ R   +K RE   +K
Sbjct: 231 TKSKLGSSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKK 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC       +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  
Sbjct: 291 DNLSVGTLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +   KI  +++I +++ A GC  +  +  E LRY K+II
Sbjct: 351 SHLSKILKSEEIKNMITAFGCGIQESFDIERLRYHKIII 389


>gi|22761969|dbj|BAC11771.1| gyrase B [Helicobacter pylori]
          Length = 389

 Score =  193 bits (491), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 144/399 (36%), Positives = 221/399 (55%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NK 202
           N TY++SGGLHGVG+SVVNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +   +
Sbjct: 1   NDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKE 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT I F PD  +      F A  L K  +  AYL+  +K  +  +K          +E 
Sbjct: 61  SGTTIEFFPDESVMEVV-EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLQET 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
           +++  GLK +++   + + L++  I     +++      V  A A  + N    S+ N I
Sbjct: 113 YFYEDGLKQFVKDSAK-KELLTPIISFKSMDEETRTSIEVALAYAD-DYNENTLSFVNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T EGGTHE+G ++ L++ I +Y +     R    IS+D+    + ++S+ + EP F GQ
Sbjct: 171 KTSEGGTHEAGFKMGLSKAILQYIDTNIKTREFRPISEDIKEGLIAVVSLKMSEPLFEGQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TK+KL S   +  V   + D    +L +NP EA  +    +  ++ R   +K RE   +K
Sbjct: 231 TKSKLGSSYVRALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKK 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC       +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  
Sbjct: 291 DNLSVGTLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +   KI  +++I +++ A GC  +  +  E LRY K+II
Sbjct: 351 SHLSKILKSEEIKNMITAFGCGIQESFDIERLRYHKIII 389


>gi|22761961|dbj|BAC11767.1| gyrase B [Helicobacter pylori]
          Length = 389

 Score =  193 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 145/399 (36%), Positives = 222/399 (55%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NK 202
           N TY++SGGLHGVG+SVVNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +   +
Sbjct: 1   NDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKE 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT I F PD  +      F A  L K  +  AYL+  +K  +  +K          +E 
Sbjct: 61  SGTTIEFFPDESVMEVV-EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLQET 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
           +++  GLK +++   + + L++  I     +++      V  A A  + N    S+ N I
Sbjct: 113 YFYEDGLKQFVKDSAK-KELLTPIISFKSMDEETRTSIEVALAYAD-DYNENTLSFVNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T EGGTHE+G ++ L++ I +Y +     R    IS+D+    + ++S+ + EP F GQ
Sbjct: 171 KTSEGGTHEAGFKMGLSKAILQYIDENIKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TK+KL S  A+  V   + D    +L +NP EA  +    +  ++ R   +K RE   +K
Sbjct: 231 TKSKLGSSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKK 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC       +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  
Sbjct: 291 DNLSVGTLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +   KI  +++I +++ A GC  +  +  E LRY K+II
Sbjct: 351 SHLSKILKSEEIKNMITAFGCGIQESFDIERLRYHKIII 389


>gi|22761979|dbj|BAC11776.1| gyrase B [Helicobacter pylori]
          Length = 389

 Score =  193 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 145/399 (36%), Positives = 222/399 (55%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NK 202
           N TY++SGGLHGVG+SVVNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +   +
Sbjct: 1   NDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKE 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT I F PD  +      F A  L K  +  AYL+  +K  +  +K          +E 
Sbjct: 61  SGTTIEFFPDESVMEVV-EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLQET 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
           +++  GLK +++   + + L++  I     +++      V  A A  + N    S+ N I
Sbjct: 113 YFYEDGLKQFVKDSAK-KELLTPVISFKSMDEETRTSIEVALAYAD-DYNENTLSFVNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T EGGTHE+G ++ L++ I +Y +     R    IS+D+    + ++S+ + EP F GQ
Sbjct: 171 KTSEGGTHEAGFKMGLSKAILQYIDENIKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TK+KL S  A+  V   + D    +L +NP EA  +    +  ++ R   +K RE   +K
Sbjct: 231 TKSKLGSSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKK 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC       +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  
Sbjct: 291 DNLSVGTLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +   KI  +++I +++ A GC  +  +  E LRY K+II
Sbjct: 351 SHLSKILKSEEIKNMITAFGCGIQESFDIERLRYHKIII 389


>gi|22761983|dbj|BAC11778.1| gyrase B [Helicobacter pylori]
          Length = 389

 Score =  193 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 145/399 (36%), Positives = 222/399 (55%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NK 202
           N TY++SGGLHGVG+SVVNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +   +
Sbjct: 1   NDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISDLEIIGKTKSAKE 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT I F PD  +      F A  L K  +  AYL+  +K  +  +K          +E 
Sbjct: 61  SGTTIEFFPDESVMEVV-EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLQEI 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
           +++  GLK +++   + + L++  I     +++      V  A A  + N    S+ N I
Sbjct: 113 YFYEDGLKQFVKDSAK-KELLTPIISFKSMDEETRTSIEVALAYAD-DYNENTLSFVNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T EGGTHE+G ++ L++ I +Y +     R    IS+D+    + ++S+ + EP F GQ
Sbjct: 171 KTSEGGTHEAGFKMGLSKAILQYIDENIKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TK+KL S  A+  V   + D    +L +NP EA  +    +  ++ R   +K RE   +K
Sbjct: 231 TKSKLGSSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKK 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC       +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  
Sbjct: 291 DNLSVGTLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +   KI  +++I +++ A GC  +  +  E LRY K+II
Sbjct: 351 SHLSKILKSEEIKNMITAFGCGIQESFDIERLRYHKIII 389


>gi|294963342|gb|ADF50158.1| DNA gyrase subunit B [Bacillus thuringiensis]
          Length = 356

 Score =  193 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 128/366 (34%), Positives = 198/366 (54%), Gaps = 14/366 (3%)

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS EL V V R   I  QK+ RGIP++ L+      +K GT   F+PDP+IF +   
Sbjct: 1   VNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETTE 59

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++ 
Sbjct: 60  YEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSKQ 113

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340
            I  E    +  K G     VE A+ + E       S+ N I T EGGTHE G + ALTR
Sbjct: 114 PIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTR 170

Query: 341 GIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E+
Sbjct: 171 VINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITES 230

Query: 399 ALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
              + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPGKLADCS
Sbjct: 231 VFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCS 290

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  ++
Sbjct: 291 SKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTII 350

Query: 518 QALGCR 523
            A+G  
Sbjct: 351 TAIGTN 356


>gi|211927055|dbj|BAG82780.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 420

 Score =  193 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 131/426 (30%), Positives = 207/426 (48%), Gaps = 36/426 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS ++ + +      + Q +    P      +     K G
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTKVELEINYGGYHWEQTYDYAKPGPL--VQGAATRKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------E 250
           T + F  DP+IF     + A  + +  Q  A+L+  +    +  +              +
Sbjct: 59  TTVRFWADPEIFETTT-YSAETVARRLQEMAFLNKGLTITLTDRRPQTAAADAVVEGDDD 117

Query: 251 IAEKYGI------------PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH 298
            AEK               P    +++P GL  Y++     ++ I   +     +  G  
Sbjct: 118 TAEKPKNAEEEASTPAVTQPRTRTYHYPDGLVDYIKHLNRTKTPIHQSVIGFTAKGTGH- 176

Query: 299 RGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAI 355
              VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++  
Sbjct: 177 --EVEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLLKEKDG 234

Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415
            +  DD+      ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP EA
Sbjct: 235 KLSGDDIREGLAAVISVKVADPQFEGQTKTKLGNTEVKSFVQKTCNEHLSHWFEANPAEA 294

Query: 416 TKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSA 474
             +++  ++ ++ RL  R+    V RKTA     LPGKLADC  N     E++IVEGDSA
Sbjct: 295 KIIVKKAVDSAQARLAARRARELVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSA 354

Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
           GGSAK  R+   QA+LP+RGKI+NV  A  +++  N ++  ++ A G     ++    LR
Sbjct: 355 GGSAKSGRDSMYQAILPIRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDLAKLR 414

Query: 535 YEKVII 540
           Y K+++
Sbjct: 415 YHKIVL 420


>gi|22761977|dbj|BAC11775.1| gyrase B [Helicobacter pylori]
          Length = 389

 Score =  193 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 145/399 (36%), Positives = 222/399 (55%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NK 202
           N TY++SGGLHGVG+SVVNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +   +
Sbjct: 1   NDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISELEVIGKTKSAKE 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT I F PD  +      F A  L K  +  AYL+  +K  +  +K          +E 
Sbjct: 61  SGTSIEFFPDESVMEVV-EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLQET 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
           +++  GLK +++   + + L++  I     +++      V  A A  + N    S+ N I
Sbjct: 113 YFYEDGLKQFVKDSAK-KELLTPVISFKSMDEETRTSIEVALAYAD-DYNENTLSFVNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T EGGTHE+G ++ L++ I +Y +     R    IS+D+    + ++S+ + EP F GQ
Sbjct: 171 KTSEGGTHEAGFKMGLSKAILQYIDENIKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TK+KL S  A+  V   + D    +L +NP EA  +    +  ++ R   +K RE   +K
Sbjct: 231 TKSKLGSSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKK 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC       +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  
Sbjct: 291 DNLSVGTLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +   KI  +++I +++ A GC  +  +  E LRY K+II
Sbjct: 351 SHLSKILKSEEIKNMITAFGCGIQESFDIERLRYHKIII 389


>gi|22761973|dbj|BAC11773.1| gyrase B [Helicobacter pylori]
          Length = 389

 Score =  193 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 146/399 (36%), Positives = 222/399 (55%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NK 202
           N TY++SGGLHGVG+SVVNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +   +
Sbjct: 1   NDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKE 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT I F PD  +      F A  L K  +  AYL+  +K  +  +K          +E 
Sbjct: 61  SGTTIEFFPDESVMEVV-EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLQET 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
           +++  GLK +++   + + L++  I     ++K      V  A A  + N    S+ N I
Sbjct: 113 YFYEDGLKQFVKDSAK-KELLTPVISFKSMDEKTRTSIEVALAYAD-DYNENTLSFVNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T EGGTHE+G ++ L++ I +Y +     R    IS+D+    + ++S+ + EP F GQ
Sbjct: 171 KTSEGGTHEAGFKMGLSKAILQYIDENIKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TK+KL S  A+  V   + D    +L +NP EA  +    +  ++ R   +K RE   +K
Sbjct: 231 TKSKLGSSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKK 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC       +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  
Sbjct: 291 DNLSVGTLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +   KI  +++I +++ A GC  +  +  E LRY K+II
Sbjct: 351 SHLSKILKSEEIKNMITAFGCGIQESFDIERLRYHKIII 389


>gi|66474553|gb|AAY46846.1| GyrB [Aeromonas sp. A1-Manipal]
          Length = 371

 Score =  193 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 137/382 (35%), Positives = 209/382 (54%), Gaps = 16/382 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SV+NALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P 
Sbjct: 1   HGVGVSVMNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 169 FRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 229 VKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 348

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 349 QEVGTLITALGCGIGRDEYNPD 370


>gi|209863343|gb|ACI88771.1| DNA gyrase subunit B [Aeromonas sp. JH68]
          Length = 371

 Score =  193 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 137/380 (36%), Positives = 209/380 (55%), Gaps = 16/380 (4%)

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P
Sbjct: 4   LHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSG-TGTEVRFWPSP 62

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            IF D   +    L K  +  ++L+  V      +++  E         F + GG+K ++
Sbjct: 63  TIFTDTL-YHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFV 114

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  
Sbjct: 115 EYLNQNKTPIHPKVFHFSTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLV 171

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS 
Sbjct: 172 GFRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSS 231

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    L
Sbjct: 232 EVKTAVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGL 291

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ +
Sbjct: 292 PGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMIS 351

Query: 510 NQQIMDLVQALGCRTRSQYR 529
           +Q++  L+ ALGC       
Sbjct: 352 SQEVGTLITALGCGIGRDEY 371


>gi|22761971|dbj|BAC11772.1| gyrase B [Helicobacter pylori]
          Length = 389

 Score =  193 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 144/399 (36%), Positives = 221/399 (55%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NK 202
           N TY++SGGLHGVG+SVVNALS  L +T+ ++  I+ Q+F +GIP+  LE   K +   +
Sbjct: 1   NDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPIGELEIIGKTKSAKE 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT I F PD  +      F A  L K  +  AYL+  +K  +  +K          +E 
Sbjct: 61  SGTTIEFFPDESVMEVV-EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLQET 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
           +++  GLK +++   + + L++  I     +++      V  A A  + N    S+ N I
Sbjct: 113 YFYEDGLKQFVKDSAK-KELLTPIISFKSMDEETRTSIEVALAYAD-DYNENTLSFVNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T EGGTHE+G ++ L++ I +Y +     R    IS+D+    + ++S+ + EP F GQ
Sbjct: 171 KTSEGGTHEAGFKMGLSKAILQYIDENIKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TK+KL S  A+  V   + D    +L +NP EA  +    +  ++ R   +K RE   +K
Sbjct: 231 TKSKLGSSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKK 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC       +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  
Sbjct: 291 DNLSVGTLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +   KI  +++I +++ A GC  +  +  E LRY K+II
Sbjct: 351 SHLSKILKSEEIKNMITAFGCGIQESFDIERLRYHKIII 389


>gi|56675172|emb|CAI34888.1| DNA gyrase subunit B [Aeromonas sp. JF2853]
          Length = 371

 Score =  193 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 138/382 (36%), Positives = 210/382 (54%), Gaps = 16/382 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT++ F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTQVRFWPSPA 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFSDTL-FHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------AHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 169 FRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 229 VKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 348

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 349 QEVGTLITALGCGIGRDEYNPD 370


>gi|262272823|gb|ACY40631.1| GyrB [Leptotrichia sp. HKU24]
 gi|262272827|gb|ACY40633.1| GyrB [Leptotrichia trevisanii]
          Length = 231

 Score =  193 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 98/227 (43%), Positives = 140/227 (61%), Gaps = 1/227 (0%)

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP+F GQTKTKL + +    V N +      YL  +P  A K++E +      R   +K
Sbjct: 1   PEPQFEGQTKTKLGNSEVTGIVSNIVGSNLKFYLEDHPKAAEKIIEKMAMSKRAREAAKK 60

Query: 435 QREVN-RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            RE+  RK  +    LPGKLADCS      +E+FIVEG+SAGGSAKQ R+R  QA+LPLR
Sbjct: 61  ARELVLRKNTLEVGSLPGKLADCSSKDPAESEIFIVEGNSAGGSAKQGRDRRFQAILPLR 120

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIAS 553
           GKILNV  +G  K   N +I  ++ A G     +   + LRY K++IMTDADVDGAHI +
Sbjct: 121 GKILNVEKSGVHKALENAEIRAMITAFGAGFGEEMDLKKLRYHKIVIMTDADVDGAHIRT 180

Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKI 600
           L+LTFFY+ + +LI + ++++  PPL++I  G    YA+ ++  +++
Sbjct: 181 LMLTFFYRHLRELINEGYIYIAQPPLYKIQAGKAIRYAYSDDQMKQV 227


>gi|22761965|dbj|BAC11769.1| gyrase B [Helicobacter pylori]
 gi|22761985|dbj|BAC11779.1| gyrase B [Helicobacter pylori]
          Length = 389

 Score =  193 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 145/399 (36%), Positives = 222/399 (55%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NK 202
           N TY++SGGLHGVG+SVVNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +   +
Sbjct: 1   NDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKE 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT I F PD  +      F A  L K  +  AYL+  +K  +  +K          +E 
Sbjct: 61  SGTTIEFFPDESVMEVV-EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLQET 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
           +++  GLK +++   + + L++  I     +++      V  A A  + N    S+ N I
Sbjct: 113 YFYEDGLKQFVKDSTK-KELLTPVISFKSMDEETRTSIEVALAYAD-DYNENTLSFVNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T EGGTHE+G ++ L++ I +Y +     R    IS+D+    + ++S+ + EP F GQ
Sbjct: 171 KTSEGGTHEAGFKMGLSKAILQYIDENIKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TK+KL S  A+  V   + D    +L +NP EA  +    +  ++ R   +K RE   +K
Sbjct: 231 TKSKLGSSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKK 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC       +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  
Sbjct: 291 DNLSVGTLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +   KI  +++I +++ A GC  +  +  E LRY K+II
Sbjct: 351 SHLSKILKSEEIKNMITAFGCGIQESFDIERLRYHKIII 389


>gi|19909589|dbj|BAB86990.1| DNA gyrase subunit B [Brevundimonas subvibrioides]
          Length = 401

 Score =  193 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 140/410 (34%), Positives = 213/410 (51%), Gaps = 24/410 (5%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR----- 200
           ++Y++SGGLHGVG+SVVNALSD L + + R       +F RG  +  L            
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSDWLKLVIYRNGKRHEMRFERGDTVESLRMTGDAPLRDSG 60

Query: 201 -----NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
                   GT +TF P    F     FD   L    +  A+L+  V      D+      
Sbjct: 61  GRAGQPLSGTEVTFYPSVTTFS-HIDFDLKTLEHRLRELAFLNSGVVIKLRDDR-----G 114

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PE 314
             P +E  ++ GG++ +++   ++++ I  ++   + +K+G     ++ A+ W +     
Sbjct: 115 AEPFEEILHYEGGVEAFVRHLDKSKTPILKDVIVIRGKKEGI---ELDLALWWNDSYHET 171

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSV 372
           +  + N I   +GGTH S  R +LTR +  Y +      K  +S+  +D       +LSV
Sbjct: 172 MLCFTNNIPQRDGGTHLSAFRTSLTRVMGSYIDTAGAARKEKVSVSGEDAREGLTCVLSV 231

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
            + +P+F+ QTK KLVS + +  VE    +    +  ++P+EA  ++  +IE +  R   
Sbjct: 232 KVPDPKFSSQTKDKLVSSEVRPAVEALCTEGLSTWFEEHPVEAKLVVGKIIEAAAAREAA 291

Query: 433 RKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           RK R+   RKTA+    LPGKLADC +     +ELFIVEGDSAGGSAKQARNR NQAVLP
Sbjct: 292 RKARDLTRRKTAMEISSLPGKLADCQERDPAKSELFIVEGDSAGGSAKQARNRENQAVLP 351

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVII 540
           LRGKILNV  A  +++ ++  I  L+ ALG          + LRY K+I+
Sbjct: 352 LRGKILNVERARFDRMLSSDLIGTLILALGTGIGRDDFNADKLRYHKIIL 401


>gi|146164143|gb|ABQ08736.1| DNA gyrase subunit beta [Aeromonas enteropelogenes]
          Length = 367

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 137/379 (36%), Positives = 208/379 (54%), Gaps = 16/379 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 169 FRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 229 VKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 348

Query: 511 QQIMDLVQALGCRTRSQYR 529
           Q++  L+ ALGC       
Sbjct: 349 QEVGTLITALGCGIGRDEY 367


>gi|294963344|gb|ADF50159.1| DNA gyrase subunit B [Bacillus amyloliquefaciens]
          Length = 368

 Score =  193 bits (490), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 137/377 (36%), Positives = 203/377 (53%), Gaps = 13/377 (3%)

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  L VTV R   I  Q + RG+P++ LE      +K GT   F PDP+IF +   
Sbjct: 1   VNALSTTLDVTVHRDGKIHYQAYERGVPVADLEVIGDT-DKTGTITHFVPDPEIFKETTV 59

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +D   L    +  A+L+  V       +E  E+        +++ GG+K+Y++    ++ 
Sbjct: 60  YDYDLLSNRVRELAFLTKGVNITIEDKREGQERKNE-----YHYEGGIKSYVEYLNRSKE 114

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
           ++  E    + EK G    TVE A+ + +     I S+ N I T EGGTHE+G +  LTR
Sbjct: 115 VVHEEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTR 171

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  YA       +   ++  DD+      I+S+   +P+F GQTKTKL + +A+   + 
Sbjct: 172 VINDYARRKGIFKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDT 231

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
                 + +L++NP  A K++E  +  +  R+  +K RE   RK+A+    LPGKLADCS
Sbjct: 232 LFSSALETFLLENPDSARKIVEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCS 291

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  ++
Sbjct: 292 SKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMI 351

Query: 518 QALGCRTRSQYREEDLR 534
            ALG      +  E  R
Sbjct: 352 TALGTGIGEDFNLEKAR 368


>gi|294963324|gb|ADF50149.1| DNA gyrase subunit B [Bacillus cereus]
          Length = 364

 Score =  193 bits (490), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 127/367 (34%), Positives = 199/367 (54%), Gaps = 14/367 (3%)

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS EL V V R+  I  QK+ RGIP++ L+      ++ GT   F+PDP+IF +   
Sbjct: 1   VNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETIV 59

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++ 
Sbjct: 60  YEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSKQ 113

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340
            I  E    +  K G     VE A+ + E       S+ N I T EGGTHE G + ALTR
Sbjct: 114 PIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTR 170

Query: 341 GIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E+
Sbjct: 171 VINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITES 230

Query: 399 ALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
              + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPGKLADCS
Sbjct: 231 VFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCS 290

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  ++
Sbjct: 291 SKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTII 350

Query: 518 QALGCRT 524
            A+G   
Sbjct: 351 TAIGTNI 357


>gi|115500926|dbj|BAF34133.1| DNA gyrase subunit B [Azomonas macrocytogenes]
          Length = 382

 Score =  193 bits (490), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 135/391 (34%), Positives = 207/391 (52%), Gaps = 16/391 (4%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
            +Y++SGGLHGVG+SVVNALS+EL +T+ R+  ++ Q ++ G+P + L    +     GT
Sbjct: 1   HSYKVSGGLHGVGVSVVNALSEELQLTIRREGKVWEQIYTHGVPKAALSPIGETEG-SGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            I F+P  + F +   F    L K  +  ++L+  V      ++   +       E F +
Sbjct: 60  EIRFKPSAETFKNIH-FSWDILAKRLRELSFLNSGVGILLRDERSGKD-------ELFKY 111

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GGL+ +++    N++ ++           G     VE A+ W +     I  + N I  
Sbjct: 112 EGGLRAFVEYLNTNKTAVNQVFHFNVQRDDGV---EVEVALQWNDSFNENILCFTNNIPH 168

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G   +LTR +  Y E      K  IS   DD       I+SV + +P+F+ Q
Sbjct: 169 RDGGTHFAGFPFSLTRNLNSYIEQEGLAKKFKISTTGDDAREGLTAIISVKVPDPKFSSQ 228

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRK 441
           TK KLVS + +  VE  +   F  +L+++P EA  ++  +I+ +  R   RK R    RK
Sbjct: 229 TKEKLVSSEVKTAVEQEMGKYFADFLLEHPSEAKAVVGKMIDAARAREAARKAREMTRRK 288

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR  QA+LPL+GKILNV  
Sbjct: 289 GALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEK 348

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           A  +K+ ++ ++  L+ ALGC         +
Sbjct: 349 ARFDKMLSSAEVGTLITALGCGIGRDEYNIE 379


>gi|66474589|gb|AAY46864.1| GyrB [Aeromonas sp. 17m]
          Length = 371

 Score =  193 bits (490), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 138/382 (36%), Positives = 208/382 (54%), Gaps = 16/382 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFSDTL-FHYEILAKRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLV  +
Sbjct: 169 FRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVCSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +LV+NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 229 VKTAVEQAMGEKLADFLVENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 348

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 349 QEVGTLITALGCGIGRDEYNPD 370


>gi|206114363|gb|ACI05263.1| DNA gyrase subunit B [Sphaerotilus montanus]
 gi|291169123|gb|ADD81988.1| DNA gyrase subunit B [Sphaerotilus montanus]
          Length = 397

 Score =  193 bits (490), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 137/406 (33%), Positives = 217/406 (53%), Gaps = 27/406 (6%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEK 198
           SGGLHGVG+S VN LS  L +TV R+   +  +F +G+P            +SP++   +
Sbjct: 1   SGGLHGVGVSCVNGLSKWLRLTVRREGHAYFMEFRQGVPQDRVLERRDGFEISPMKVIGE 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +KRGT + F PD +IF +   F    L K  +  ++L+  VK     ++   E     
Sbjct: 61  T-DKRGTEVHFLPDLEIFSNI-DFHYEILSKRLRELSFLNNGVKIRLVDERNGKEDN--- 115

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK--KGTHRGTVEWAIAWCEEN-PEI 315
               F + GG+K +++   + + ++   IF  + +K         VE A+ W E     +
Sbjct: 116 ----FAYAGGVKGFVEFVNKGKKVLHPNIFHARGDKMSDNQTNVGVEVAMQWNESYNENV 171

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +GLR A+TR + KY +  +   K  + I  +D+      ++SV 
Sbjct: 172 LCFTNNIPQRDGGTHLTGLRAAMTRVMNKYIDDHEIAKKAKVEISGEDMREGLACVVSVK 231

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + EP+F+ QTK KLVS + +  VE+ +      +L++NP +A  +   +++ +  R   R
Sbjct: 232 VPEPKFSSQTKDKLVSSEVRGPVEDIVSRLLTDWLLENPTDAKTICGKIVDAARARDAAR 291

Query: 434 KQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           K RE+ R+   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPL
Sbjct: 292 KAREMTRRKGVLDGMGLPGKLADCQEKDPALCEIYIVEGDSAGGSAKQGRDRKFQAILPL 351

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538
           RGKILNV  A  EK+ ++ +I+ L+ ALG         +D   +K+
Sbjct: 352 RGKILNVERARYEKLLSSNEILTLITALGTGIGQGMGGDDFNPDKL 397


>gi|27901577|dbj|BAC55909.1| DNA gyrase subunit B [Williamsia muralis]
 gi|108860573|dbj|BAE96001.1| DNA gyrase B [Williamsia muralis]
          Length = 437

 Score =  193 bits (490), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 126/443 (28%), Positives = 206/443 (46%), Gaps = 53/443 (11%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  + + +      + Q ++  +P    +       K G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSKTVELEINHAGFSWEQTYTNAVPGPLKK--GAPTKKTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T + +  D KIF     +D   + +  Q  A+L+  +    + ++               
Sbjct: 59  TTVRYWADEKIFETTT-YDFDTIARRLQEMAFLNKGLTITLTDERPATIEVGDADDVDVA 117

Query: 250 ----------------------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
                                       +            +++PGGL+ +++     ++
Sbjct: 118 EAPKSEDELAEEAANTELADEAVVDAEGKPENSKKKSRTRIYHYPGGLEDFVRHLNNRKT 177

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I + + +   +  G     +E A+ W       + ++ NTI T EGGTHE G R ALT 
Sbjct: 178 AIHNSVLSFTAKGTGH---ELEVAMQWNSGYAESVHTFANTINTHEGGTHEEGFRSALTA 234

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            + KYA   +    +   +  +D+      ++SV + +P+F GQTKTKL   + +  V+ 
Sbjct: 235 TVNKYATEKKLVKDKGDKLTGEDIREGLAAVISVKVADPQFEGQTKTKLGITEVKSFVQK 294

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
              +   H+   NP EA  ++   +E +  RL  RK RE V RK+A     LPGKLADC 
Sbjct: 295 VSNENLAHWFESNPAEAKIIIRKAVESANARLAARKARELVRRKSANDIGGLPGKLADCR 354

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                  E++IVEGDSAGGSAK  R+   QA+LP+RGKI+NV  A  +++  N ++  ++
Sbjct: 355 SKDPSKCEVYIVEGDSAGGSAKSGRDSMYQAILPIRGKIINVEKARIDRVLKNTEVQSII 414

Query: 518 QALGCRTRSQYREEDLRYEKVII 540
            A G     ++    LRY K+++
Sbjct: 415 TAFGTGIHDEFDISKLRYHKIVL 437


>gi|22761963|dbj|BAC11768.1| gyrase B [Helicobacter pylori]
          Length = 389

 Score =  193 bits (490), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 145/399 (36%), Positives = 222/399 (55%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NK 202
           N TY++SGGLHGVG+SVVNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +   +
Sbjct: 1   NDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKE 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT I F PD  +      F A  L K  +  AYL+  +K  +  +K          +E 
Sbjct: 61  SGTTIEFFPDESVMEVV-EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLQET 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
           +++  GLK +++   + + L++  I     +++      V  A A  + N    S+ N I
Sbjct: 113 YFYEDGLKQFVKDSAK-KELLTPVISFKSMDEETRTSIEVALAYAD-DYNENTLSFVNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T EGGTHE+G ++ L++ I +Y +     R    IS+D+    + ++S+ + EP F GQ
Sbjct: 171 KTSEGGTHEAGFKMGLSKAILQYIDENIKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TK+KL S  A+  V   + D    +L +NP EA  +    +  ++ R   +K RE   +K
Sbjct: 231 TKSKLGSSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKK 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC       +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  
Sbjct: 291 DNLSVGTLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +   KI  +++I +++ A GC  +  +  E LRY K+II
Sbjct: 351 SYLSKILKSEEIKNMITAFGCGIQESFDIERLRYHKIII 389


>gi|294670364|ref|ZP_06735246.1| hypothetical protein NEIELOOT_02082 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307828|gb|EFE49071.1| hypothetical protein NEIELOOT_02082 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 236

 Score =  193 bits (490), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 58/162 (35%), Positives = 87/162 (53%), Gaps = 12/162 (7%)

Query: 531 EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTK--- 587
             +RY K+ I++DADVDG+HI  LLLT FY+    LI   H+++  PPLFR+    +   
Sbjct: 74  NSMRYGKIAILSDADVDGSHIQVLLLTLFYRHFPALIRHGHIYVAQPPLFRVDVNAQGKS 133

Query: 588 ----SVYAHDEEHKQKILEEF--KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
                 YA D+   + ILE    +K  +    IS FKGLGEM   QLK+T M+ + R LL
Sbjct: 134 RPAGKFYALDQGELEGILERLAAEKVKESAYSISCFKGLGEMNPDQLKDTTMNPDTRRLL 193

Query: 642 RVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQERASFID 682
           RV I +  +  + T  +  +LMG  +   R  +++     ++
Sbjct: 194 RVGIPE--HDSETTLAAFTRLMGKGETAARRSWMEAEGDRVE 233


>gi|295979467|dbj|BAJ07406.1| DNA gyrase subunit B [Leptothrix sp. MBIC 3364]
          Length = 275

 Score =  193 bits (490), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 92/280 (32%), Positives = 142/280 (50%), Gaps = 26/280 (9%)

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           + I V++  +  ++V+DNGRGIP          P +S  EI LT LHAGGKF+ ++Y++S
Sbjct: 1   DDIVVTIHTDNSISVIDNGRGIPTGVKMDDKHEPKRSAAEIALTELHAGGKFNQNSYKVS 60

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKV 199
           GGLHGVG+S VNALS  L +T+ R   +   +F +G+P            +SP++   + 
Sbjct: 61  GGLHGVGVSCVNALSKWLRLTIRRDGKVHYLEFRKGVPQDRVLEQRDGFEVSPMKIIGET 120

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            +KRGT + F PD +IF   A F    L K  +  ++L+  VK     ++   E      
Sbjct: 121 -DKRGTEVHFLPDDEIFQQNADFHYDILAKRLRELSFLNNGVKIRLVDERHNKEDN---- 175

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK--KGTHRGTVEWAIAWCEENPEI-T 316
              F F GG+K +++   + + ++   +F    EK         VE A+ W +   E   
Sbjct: 176 ---FAFAGGVKGFVEFINQGKKVLHPNVFHAVGEKLSDQNTSIGVEVAMQWNDGYSENVL 232

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
            + N I   +GGTH +GLR A+TR I KY E  +  +   
Sbjct: 233 CFTNNIPQRDGGTHLTGLRAAMTRVINKYIEDNELAKKAK 272


>gi|288567|emb|CAA78815.1| DNA topoisomerase II [Homo sapiens]
          Length = 400

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 74/398 (18%), Positives = 140/398 (35%), Gaps = 52/398 (13%)

Query: 19  SSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE------- 71
           ++ K ++S     + +    S    Y          LE + +RP  YIG  +        
Sbjct: 25  NAAKKEESETANKNDSSKKLSVERVYQKK-----TQLEHILLRPDTYIGSVEPLTQFMWV 79

Query: 72  ---------------KALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN-GFLTVVDNGR 114
                            L+ +F E++ NA D          I+VS+D     +++ +NG+
Sbjct: 80  YDEDVGMNCREVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGK 139

Query: 115 GIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA 174
           GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V  A
Sbjct: 140 GIPVVEH-KVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETA 198

Query: 175 RQNTIFSQK--FSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKM 230
            +    S K  +   +  +   K +    +  T ITF+PD              A + + 
Sbjct: 199 CKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKDIVALMTRR 258

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
               A     VK  ++  K                  G ++Y+   ++++   +      
Sbjct: 259 AYDLAGSCRGVKVMFNGKKLPV--------------NGFRSYVDLYVKDKLDETGVALKV 304

Query: 291 KTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
             E         +  +   E+  +  S+ N+I T +GG H   +   +   + +     +
Sbjct: 305 IHEL---ANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIE-VVKKK 360

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           NK  +S+    +       ++  I  P F  QTK  + 
Sbjct: 361 NKAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMT 398


>gi|66474555|gb|AAY46847.1| GyrB [Aeromonas sp. ABJ]
          Length = 371

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 138/382 (36%), Positives = 209/382 (54%), Gaps = 16/382 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQNKTPIHRKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 169 FRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 229 VKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 348

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 349 QEVGTLITALGCGIGRDEYNPD 370


>gi|119226162|dbj|BAF41060.1| DNA gyrase subunit B [Tsukamurella paurometabola]
          Length = 428

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 136/431 (31%), Positives = 215/431 (49%), Gaps = 38/431 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE----KKEKVR 200
           +  Y +SGGLHGVGISVVNALS  + V +      + Q F               K +  
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSSRVEVEIDVDGFHWQQNFHWDDAKRDSVAEDLIKGEPT 60

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA-------- 252
            + GT + F  DPK+F +   +D   + +  Q  A+L+  +    + ++ +A        
Sbjct: 61  TRTGTTVRFWADPKVFTETTHYDFETVSRRLQEMAFLNKGLTITLTDERPVAIEVPDEDI 120

Query: 253 -----------------EKYGIPEKEEFYFPGGLKTYLQTKL--ENRSLISSEIFTGKTE 293
                            E      +  F++P GL  Y++      ++S I + I + + +
Sbjct: 121 TEEAPSAHEEDVAAALAEVAPKKRERIFHYPDGLVDYVKHINARTSKSPIHASIISFEGK 180

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350
           +KG     +E A+ W       + ++ NTI T EGGTHE G R ALT  +K YA+  +  
Sbjct: 181 EKGH---EIEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRTALTGVVKAYAKDKKLV 237

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            ++   +  DD+      ++SV + EP+F GQTKTKL + + +  V+   R+    +   
Sbjct: 238 KEKDGELSGDDIREGLAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKVCREQLQFWFDS 297

Query: 411 NPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           NP +A  +++     ++ RL  RK RE V RK+A     LPGKLADC  N     E++IV
Sbjct: 298 NPADAKTIVQKAAASAQARLAARKARELVRRKSATDIGGLPGKLADCRSNDPDKCEVYIV 357

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           EGDSAGGSAK  R+   QA+LP+RGKI+NV  A  +K+  N ++  ++ A G     ++ 
Sbjct: 358 EGDSAGGSAKSGRDSMYQAILPIRGKIINVEKARIDKVLKNTEVQSIITAFGTGIHDEFD 417

Query: 530 EEDLRYEKVII 540
              LRY+K+++
Sbjct: 418 IAKLRYKKIVL 428


>gi|319958726|gb|ADV90533.1| DNA gyrase subunit B [Bacillus amyloliquefaciens]
          Length = 368

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 135/377 (35%), Positives = 201/377 (53%), Gaps = 13/377 (3%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LS  L VTV R   I  Q + RG+P++ LE      +K GT   F PDP+IF +   +D 
Sbjct: 1   LSTTLDVTVHRDGKIHYQAYERGVPVADLEVIGDT-DKTGTITHFVPDPEIFKETTVYDY 59

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             L    +  A+L+  V       +E  E+        +++ GG+K+Y++    ++ ++ 
Sbjct: 60  DLLSNRVRELAFLTKGVNITIEDKREGQERKNE-----YHYEGGIKSYVEYLNRSKEVVH 114

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
            E    + EK G    TVE A+ + +     I S+ N I T EGGTHE+G +  LTR I 
Sbjct: 115 EEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVIN 171

Query: 344 KYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            YA       +   ++  DD+      I+S+   +P+F GQTKTKL + +A+   +    
Sbjct: 172 DYARRKGIFKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFS 231

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNI 460
              + +L++NP  A K++E  +  +  R+  +K RE   RK+A+    LPGKLADCS   
Sbjct: 232 SALETFLLENPDSARKIVEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKD 291

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  ++ AL
Sbjct: 292 PSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITAL 351

Query: 521 GCRTRSQYREEDLRYEK 537
           G      +  E  RY  
Sbjct: 352 GTGIGEDFNLEKARYHN 368


>gi|22761967|dbj|BAC11770.1| gyrase B [Helicobacter pylori]
 gi|22761987|dbj|BAC11780.1| gyrase B [Helicobacter pylori]
          Length = 389

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 146/399 (36%), Positives = 223/399 (55%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN--K 202
           N TY++SGGLHGVG+SVVNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +N  +
Sbjct: 1   NDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISELEVIGKTKNAKE 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT I F PD  +      F A  L K  +  AYL+  +K  +  +K          +E 
Sbjct: 61  SGTAIEFFPDESVMEVV-EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLQET 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
           +++  GLK +++   + + L++  I     +++      V  A A  + N    S+ N I
Sbjct: 113 YFYEDGLKQFVKDSAK-KELLTPVISFKSMDEETRTSIEVALAYAD-DYNENTLSFVNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T EGGTHE+G ++ L++ I +Y +     R    IS+D+    + ++S+ + EP F GQ
Sbjct: 171 KTSEGGTHEAGFKMGLSKAILQYIDENIKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TK+KL S  A+  V   + D    +L +NP EA  +    +  ++ R   +K RE   +K
Sbjct: 231 TKSKLGSSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKK 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC       +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  
Sbjct: 291 DNLSVGTLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +   KI  +++I +++ A GC  +  +  E LRY K+II
Sbjct: 351 SHLSKILKSEEIKNMITAFGCGIQESFDIERLRYHKIII 389


>gi|312076266|ref|XP_003140784.1| hypothetical protein LOAG_05200 [Loa loa]
 gi|307764048|gb|EFO23282.1| hypothetical protein LOAG_05200 [Loa loa]
          Length = 446

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 88/448 (19%), Positives = 166/448 (37%), Gaps = 31/448 (6%)

Query: 72  KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKST 129
             L+ +F E++ NA D        NLI+V+++     +++ +NGRGIPV  H K      
Sbjct: 20  PGLYKIFDEILVNAADNKQRDPKMNLIKVNINKEENEISIYNNGRGIPVVLH-KIEKLYV 78

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQ--NTIFSQKFSRG 187
            E+I  TL     +D+S  +++GG +G G  + N  S E  +  +       F Q +   
Sbjct: 79  PELIFGTLLTSSNYDDSERKVTGGRNGYGAKLCNIFSKEFTLETSTNEYEKAFKQTWVNN 138

Query: 188 IPLSPLEKKEKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
           +      K    + +  TR+TF+PD              A + +     A  +  VK   
Sbjct: 139 MSKGEEPKITTSKREDFTRVTFKPDLAKFKMTKLDDDIVALMCRRAYDIAGSTRGVKVFL 198

Query: 246 SCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
           +  +   +              G K Y++  +++    + E +    E   +     E A
Sbjct: 199 NNKQIPVQ--------------GFKQYVEQYVKHNVDNNGEAYKVVYE---SVSPRWEVA 241

Query: 306 IAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR-AISIISDDLMI 364
           +   ++  +  S+ N+I T +GG H   +   +   +    +    K   I++    +  
Sbjct: 242 LTISDKGFQQVSFANSIATTKGGRHVDYVVDQIASKLIDVIKKKIGKSGGINVKPFQIKN 301

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
                ++  I  P F  QTK  +            L    + ++                
Sbjct: 302 HMWIFVNALIENPTFDSQTKETMTLQSKSFGSTCELS---EKFIQAALKCGIVEAIMAWV 358

Query: 425 RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA--- 481
           R +++    K+    + + ++ +       D     +    L + EGDSA   A      
Sbjct: 359 RFKQQETLDKKCSSKKTSKLKGVPKLEDANDAGTKNSAQCTLILTEGDSAKSLAVSGLGV 418

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRN 509
             R    V PLRGK+LNV     +++ +
Sbjct: 419 VGRDKYGVFPLRGKMLNVREGNHKQVID 446


>gi|115500940|dbj|BAF34140.1| B subunit gyrase [Azomonas agilis]
          Length = 385

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 145/397 (36%), Positives = 215/397 (54%), Gaps = 17/397 (4%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS+EL +TV R   ++ Q +  G+P +PL    +  +  GT I 
Sbjct: 1   KVSGGLHGVGVSVVNALSEELLLTVRRDGKVWEQLYQHGVPAAPLSAIGET-DTSGTEIR 59

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F+P P+ F +   F    L K  +  ++L+  V      ++   E       E F + GG
Sbjct: 60  FKPSPETFKNIH-FSWDILAKRLRELSFLNSGVGILLRDERSGKE-------ELFKYEGG 111

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEG 327
           L+ +++    N+++++           G     VE A+ W +  N  I  + N I   +G
Sbjct: 112 LRAFVEYLNTNKTIVNQVFHFNVQRNDGV---GVEVALQWNDGFNEHILCFTNNIPQRDG 168

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH +G R ALTR +  Y E      K       DD       I+SV + +P+F+ QTK 
Sbjct: 169 GTHLAGFRSALTRNLNTYLEQEGLAKKFKFQPTGDDAREGLTAIISVKVPDPKFSSQTKD 228

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAI 444
           KLVS + +  VE  +   F  +L++ P EA  ++  +++ +  R   RK R    RK A+
Sbjct: 229 KLVSSEVKTAVEQEMGKYFAEFLLERPAEAKAVVGKMLDAARAREAARKAREMTRRKGAL 288

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  
Sbjct: 289 DIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARF 348

Query: 505 EKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
           +K+ ++Q++  L+ ALGC   R +Y  E LR   ++I
Sbjct: 349 DKMLSSQEVGTLITALGCGIGRDEYNIEKLRNHNIVI 385


>gi|22761991|dbj|BAC11782.1| gyrase B [Helicobacter pylori]
          Length = 389

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 144/399 (36%), Positives = 221/399 (55%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NK 202
           N TY++SGGLHGVG+SVVNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +   +
Sbjct: 1   NDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKE 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT I F PD  +      F A  L K  +  AYL+  +K  +  +K          +E 
Sbjct: 61  SGTTIEFFPDESVMEVV-EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLQET 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
           +++  GLK +++   + + L++  I     +++      V  A A  + N    S+ N I
Sbjct: 113 YFYEDGLKQFVKDSAK-KELLTPIISFKSMDEEMRTSIEVALAYAD-DYNENTLSFVNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T EGGTHE+G ++ L++ I +Y +     R    IS+D+    + ++S+ + EP F GQ
Sbjct: 171 KTSEGGTHETGFKMGLSKAILQYIDENIKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TK+KL S   +  V   + D    +L +NP EA  +    +  ++ R   +K RE   +K
Sbjct: 231 TKSKLGSSYVRALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKK 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC       +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  
Sbjct: 291 DNLSVGTLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +   KI  +++I +++ A GC  +  +  E LRY K+II
Sbjct: 351 SHLSKILKSEEIKNMITAFGCGIQESFDIERLRYHKIII 389


>gi|319958724|gb|ADV90532.1| DNA gyrase subunit B [Bacillus amyloliquefaciens]
          Length = 367

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 135/376 (35%), Positives = 201/376 (53%), Gaps = 13/376 (3%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LS  L VTV R   I  Q + RG+P++ LE      +K GT   F PDP+IF +   +D 
Sbjct: 1   LSTTLDVTVHRDGKIHYQAYERGVPVADLEVIGDT-DKTGTITHFVPDPEIFKETIVYDY 59

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             L    +  A+L+  V       +E  E+        +++ GG+K+Y++    ++ ++ 
Sbjct: 60  DLLSNRVRELAFLTKGVNITIEDKREGQERKNE-----YHYEGGIKSYVEYLNRSKEVVH 114

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
            E    + EK G    TVE A+ + +     I S+ N I T EGGTHE+G +  LTR I 
Sbjct: 115 EEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVIN 171

Query: 344 KYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            YA       +   ++  DD+      I+S+   +P+F GQTKTKL + +A+   +    
Sbjct: 172 DYARRKGIFKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFS 231

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNI 460
              + +L++NP  A K++E  +  +  R+  +K RE   RK+A+    LPGKLADCS   
Sbjct: 232 SALETFLLENPDSARKIVEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKD 291

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  ++ AL
Sbjct: 292 PSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITAL 351

Query: 521 GCRTRSQYREEDLRYE 536
           G      +  E  RY 
Sbjct: 352 GTGIGEDFNLEKARYH 367


>gi|319958762|gb|ADV90551.1| DNA gyrase subunit B [Bacillus subtilis]
          Length = 367

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 133/374 (35%), Positives = 201/374 (53%), Gaps = 13/374 (3%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LS EL VTV R   I  Q + RG+P+S LE   +  +  GT   F PDP+IF +   +D 
Sbjct: 1   LSTELVVTVHRDGKIHRQTYKRGVPVSDLEIIGET-DHTGTTTHFVPDPEIFTETTEYDY 59

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             L    +  A+L+  V       +E  E+        +++ GG+K+Y++    ++ ++ 
Sbjct: 60  DLLANRVRELAFLTKGVNITIEDKREGQERKNE-----YHYEGGIKSYVEYLNRSKEVVH 114

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
            E    + EK G    TVE A+ + +     I S+ N I T EGGTHE+G +  LTR I 
Sbjct: 115 EEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVIN 171

Query: 344 KYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            YA      +    ++  DD+      I+S+   +P+F GQTKTKL + +A+   +    
Sbjct: 172 DYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFS 231

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNI 460
              + ++++NP  A K+++  +  +  R+  +K RE   RK+A+    LPGKLADCS   
Sbjct: 232 TAMETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKD 291

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  ++ AL
Sbjct: 292 PSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITAL 351

Query: 521 GCRTRSQYREEDLR 534
           G      +  E  R
Sbjct: 352 GTGIGEDFNLEKAR 365


>gi|294963330|gb|ADF50152.1| DNA gyrase subunit B [Bacillus amyloliquefaciens]
          Length = 367

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 136/376 (36%), Positives = 202/376 (53%), Gaps = 13/376 (3%)

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  L VTV R   I  Q + RG+P++ LE      +K GT   F PDP+IF +   
Sbjct: 1   VNALSTTLDVTVHRDGKIHYQAYERGVPVADLEVIGDT-DKTGTITHFVPDPEIFKETTV 59

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +D   L    +  A+L+  V       +E  E+        +++ GG+K+Y++    ++ 
Sbjct: 60  YDYDLLSNRVRELAFLTKGVNITIEDKREGQERKNE-----YHYEGGIKSYVEYLNRSKE 114

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
           ++  E    + EK G    TVE A+ + +     I S+ N I T EGGTHE+G +  LTR
Sbjct: 115 VVHEEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTR 171

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  YA       +   ++  DD+      I+S+   +P+F GQTKTKL + +A+   + 
Sbjct: 172 VINDYARRKGIFKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDT 231

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
                 + +L++NP  A K++E  +  +  R+  +K RE   RK+A+    LPGKLADCS
Sbjct: 232 LFSSALETFLLENPDSARKIVEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCS 291

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  ++
Sbjct: 292 SKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMI 351

Query: 518 QALGCRTRSQYREEDL 533
            ALG      +  E  
Sbjct: 352 TALGTGIGEDFNLEKA 367


>gi|262272829|gb|ACY40634.1| GyrB [Leptotrichia buccalis]
          Length = 230

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 97/227 (42%), Positives = 142/227 (62%), Gaps = 1/227 (0%)

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP+F GQTKTKL + +    V N +      YL  +P +A +++E ++     R   +K
Sbjct: 1   PEPQFEGQTKTKLGNSEVTGIVSNIVGTNLKFYLEDHPKDAERVIEKMVMSKRAREAAKK 60

Query: 435 QREVN-RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            RE+  RK  +    LPGKLADCS      +E+FIVEG+SAGGSAKQ R+R  QA+LPLR
Sbjct: 61  ARELVLRKNTLEVGSLPGKLADCSSKDPAESEIFIVEGNSAGGSAKQGRDRRFQAILPLR 120

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIAS 553
           GKILNV  +G  K   N +I  ++ A G     +   + LRY K++IMTDADVDGAHI +
Sbjct: 121 GKILNVEKSGIHKALENAEIRAMITAFGAGFGEEIDLKKLRYHKIVIMTDADVDGAHIRT 180

Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKI 600
           L+LTFFY+ + +LI + ++++  PPL++I  G    YA+ ++  +++
Sbjct: 181 LMLTFFYRHLRELINEGYIYIAQPPLYKIQAGKAIRYAYSDDQMKQV 227


>gi|23451177|gb|AAN32693.1| DNA gyrase subunit B [Aeromonas sobria]
          Length = 371

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 138/382 (36%), Positives = 208/382 (54%), Gaps = 16/382 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVGISVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P 
Sbjct: 1   HGVGISVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSG-TGTEVRFWPSPT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   +    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFTDTL-YHYEILAKRLRELSFLNSGVSIRLHDERDGRE-------VHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE  G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQNKTPIHPKVFHFTTEHDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 169 FRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 229 VKTAVEQAMGEKLGEFLLENPSDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 348

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 349 QEVGTLITALGCGIGRDEYNPD 370


>gi|66474579|gb|AAY46859.1| GyrB [Aeromonas sp. RK 70363]
          Length = 372

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 136/382 (35%), Positives = 208/382 (54%), Gaps = 15/382 (3%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGV  SVVNALSD+L +T+ R   ++ Q +  G P +PL++     +  GT + F P P 
Sbjct: 1   HGVAPSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPT 60

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   +    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 61  IFTDTL-YHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVE 112

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 113 YLNQNKTPIHPKVFHFSTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 169

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 170 FRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 229

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 230 VKTAVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 289

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 290 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 349

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 350 QEVGTLITALGCGIGRDEYNPD 371


>gi|319958716|gb|ADV90528.1| DNA gyrase subunit B [Bacillus subtilis]
 gi|319958718|gb|ADV90529.1| DNA gyrase subunit B [Bacillus subtilis]
          Length = 365

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 132/374 (35%), Positives = 200/374 (53%), Gaps = 13/374 (3%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LS EL VTV R   I  Q + RG+P++ LE   +  +  GT   F PDP+IF +   +D 
Sbjct: 1   LSTELDVTVHRDGKIHRQTYKRGVPVADLEVIGET-DHTGTTTHFVPDPEIFTETTVYDY 59

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             L    +  A+L+  V       +E  E+        +++ GG+K+Y++     + ++ 
Sbjct: 60  DLLANRVRELAFLTKGVNITIEDKREGQERKNE-----YHYEGGIKSYVEYLNRAKEVVH 114

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
            E    + EK G    TVE A+ + +     I S+ N I T EGGTHE+G +  LTR I 
Sbjct: 115 EEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVIN 171

Query: 344 KYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            YA      +    ++  DD+      I+S+   +P+F GQTKTKL + +A+   +    
Sbjct: 172 DYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFS 231

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNI 460
              + ++++NP  A K+++  +  +  R+  +K RE   RK+A+    LPGKLADCS   
Sbjct: 232 AAMETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKD 291

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  ++ AL
Sbjct: 292 PSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITAL 351

Query: 521 GCRTRSQYREEDLR 534
           G      +  E  R
Sbjct: 352 GTGIGEDFNLEKAR 365


>gi|83683050|emb|CAJ47369.1| DNA gyrase subunit B [Aeromonas molluscorum]
          Length = 372

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 133/383 (34%), Positives = 210/383 (54%), Gaps = 17/383 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS++L +T+ R   ++ Q +  G P +PL++     N  GT + F P   
Sbjct: 1   HGVGVSVVNALSEKLLLTIRRNGHVYEQTYHMGEPQAPLKQIGD-SNGTGTEVRFWPSAT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   +    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFTDTL-YHYDILAKRLRELSFLNSGVSIRLEDERDGRE-------VHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQNKTPIHQKVFHFSTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
            R ALTR +  Y +    ++  +  +   DD+    + ++SV + +P+F+ QTK KLVS 
Sbjct: 169 FRTALTRTLNTYMDREDYSKKAKMSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSS 228

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRL 449
           + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK R    RK A+    L
Sbjct: 229 EVKTAVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAARKAREMTRRKGALDIAGL 288

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +++ +
Sbjct: 289 PGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVERARFDRMIS 348

Query: 510 NQQIMDLVQALGCRTRSQYREED 532
           +Q++  L+ ALGC         D
Sbjct: 349 SQEVGTLITALGCGIGRDEYNPD 371


>gi|186462244|gb|ACC78599.1| DNA gyrase subunit B [Pseudomonas sp. 8H1]
          Length = 374

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 138/386 (35%), Positives = 204/386 (52%), Gaps = 16/386 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +     GT+I FR
Sbjct: 1   SGGLHGVGVSVVNALSELLVLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SETTGTQIHFR 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F    L K  +  ++L+  V      ++   E       E F + GGL+
Sbjct: 60  PSDETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLR 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++    N++ ++         + G     VE A+ W +     +  + N I   +GGT
Sbjct: 112 AFVEYLNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KL
Sbjct: 169 HLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRK 446
           VS + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+  
Sbjct: 229 VSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDI 288

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K
Sbjct: 289 AGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDK 348

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED 532
           + ++Q++  L+ ALGC         D
Sbjct: 349 MISSQEVGTLITALGCGIGRDEYNID 374


>gi|209863315|gb|ACI88757.1| DNA gyrase subunit B [Aeromonas sp. JH120]
          Length = 369

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 137/381 (35%), Positives = 208/381 (54%), Gaps = 16/381 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPA 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFSDTL-FHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------AHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 169 FRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 229 VKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 348

Query: 511 QQIMDLVQALGCRTRSQYREE 531
           Q++  L+ ALGC         
Sbjct: 349 QEVGTLITALGCGIGRDEYTP 369


>gi|309253414|gb|ADO60722.1| gyrase subunit B [Micromonospora auratinigra]
          Length = 373

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 113/377 (29%), Positives = 192/377 (50%), Gaps = 9/377 (2%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS  + V + +  +++ Q++    P    +   +  ++ G+ ++F PD
Sbjct: 3   GLHGVGVSVVNALSTRMAVEIHKSGSVWRQQYHNSKPTPLEK--GESTDRTGSAVSFWPD 60

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
             +F     FD   + +  Q  A+L+  +      ++    + G   +  F + GG+  +
Sbjct: 61  ADVFETV-DFDFQTIYRRLQEMAFLTRGLTIHLLDERVPESEEGKLREVTFRYDGGIADF 119

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++    +++ I   +     E++G    ++E A+ W E     + ++ N I T EGGTHE
Sbjct: 120 VRHLNASKNPIHKTVVEFGAEEEG---MSLEIAMQWNESYGESVYTFANNINTHEGGTHE 176

Query: 332 SGLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
            G R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQTKTKL + 
Sbjct: 177 EGFRSALTSVVNRYGAEKKLLKGDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNT 236

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRKTAIRKLRL 449
             +  V+    D    +  +NP EA  +++            ++ ++   RK+ +    +
Sbjct: 237 PVKSFVQRVCNDRLVDWFDRNPAEAKMIIQKASQAARARIAAQQARKLARRKSLLESGSM 296

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  
Sbjct: 297 PGKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLK 356

Query: 510 NQQIMDLVQALGCRTRS 526
           N ++  L+ ALG     
Sbjct: 357 NNEVQALITALGTGIHD 373


>gi|330896905|gb|AEC48371.1| gyrase B [Streptomyces macrosporeus]
          Length = 394

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 129/393 (32%), Positives = 200/393 (50%), Gaps = 17/393 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS  + V V      ++Q++  G+P +PL + E      GT +TF 
Sbjct: 1   SGGLHGVGVSVVNALSTRVAVEVKTDGHRWTQEYKLGVPTAPLARHEATEE-TGTSVTFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI-----------AEKYGIPE 259
            D  IF     +    L +  Q  A+L+  +K   + ++E             ++    +
Sbjct: 60  ADGDIFETT-DYSFETLSRRFQEMAFLNKGLKINLTDERESAKATAGADEAGEDEKHEVK 118

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              +++ GG+  +++     +  +          +      ++E A+ W       + S+
Sbjct: 119 SVSYHYEGGIVDFVKYLNSRKGELVHPTVIDLEAEDRDRHLSLEVAMQWNSGYTEGVYSF 178

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIRE 376
            N I T EGGTHE G R ALT  I KYA   +    +  ++  DD+      I+SV + E
Sbjct: 179 ANIIHTHEGGTHEEGFRAALTSLINKYARDKKLLRDKDDNLTGDDIREGLTAIISVKLAE 238

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F GQTKTKL + + +  V+  + +  + +L +NP EA  ++   I  +  R+  RK R
Sbjct: 239 PQFEGQTKTKLGNTEVKTFVQKVVYEHLNDWLDRNPNEAADIIRKGIAAATARVAARKAR 298

Query: 437 EVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           ++ R+  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGK
Sbjct: 299 DLTRRKGLLESASLPGKLSDCQSNDPVKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGK 358

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528
           ILNV  A  ++I  NQ+I  ++ A G      +
Sbjct: 359 ILNVEKARIDRILQNQEIQAMISAFGTGVHEDF 391


>gi|532280|dbj|BAA05031.1| DNA gyrase subunit B [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
          Length = 147

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 64/141 (45%), Positives = 81/141 (57%), Gaps = 9/141 (6%)

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQK 599
           MTDAD DGAHI +LLLTFFY+ M DLI  K +++  PPL++IT   KS  Y  DEE   K
Sbjct: 1   MTDADTDGAHIQTLLLTFFYRHMKDLIIHKKVYIALPPLYKITFNDKSFIYLWDEEELNK 60

Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
               F K    K EI R+KGLGEM A QL +T MD   R +++V I+  L      +   
Sbjct: 61  ----FNKTNTKKYEIQRYKGLGEMNADQLWQTTMDPKNRKIIQVTISDGL----LAERMF 112

Query: 660 NKLMGTKADERFKFIQERASF 680
             LMG   ++R  +IQE   F
Sbjct: 113 KTLMGDDVEKRKLWIQENVKF 133


>gi|209863301|gb|ACI88750.1| DNA gyrase subunit B [Aeromonas sp. JH102]
 gi|209863303|gb|ACI88751.1| DNA gyrase subunit B [Aeromonas sp. JH112]
 gi|209863307|gb|ACI88753.1| DNA gyrase subunit B [Aeromonas sp. JH440]
 gi|209863361|gb|ACI88780.1| DNA gyrase subunit B [Aeromonas sp. JH158]
 gi|209863365|gb|ACI88782.1| DNA gyrase subunit B [Aeromonas sp. JH441]
 gi|209863367|gb|ACI88783.1| DNA gyrase subunit B [Aeromonas sp. JH111]
          Length = 367

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 137/379 (36%), Positives = 208/379 (54%), Gaps = 16/379 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPA 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFSDTL-FHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------AHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 169 FRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 229 VKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 348

Query: 511 QQIMDLVQALGCRTRSQYR 529
           Q++  L+ ALGC       
Sbjct: 349 QEVGTLITALGCGIGRDEY 367


>gi|207107906|dbj|BAG71965.1| DNA gyrase subunit B [Gordonia araii]
          Length = 408

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 126/414 (30%), Positives = 204/414 (49%), Gaps = 37/414 (8%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           GISVVNALS  + + +AR   +++Q + R +P    +   +   + GT   F PD  IF 
Sbjct: 1   GISVVNALSTRVELEIARDGFVWTQDYERAVPGLLKK--GEPTKRTGTTTRFWPDGDIFE 58

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------------------- 258
               F A  + +  Q  A+L+  +    + ++   ++                       
Sbjct: 59  TTT-FSAETVARRLQEMAFLNKGLTITLTDNRISDDEAIAEADLDGDGTDKAETVKSEEE 117

Query: 259 --------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                       +++P GL  Y++     ++ I S +     + +G     VE A+ W  
Sbjct: 118 KKAQAAVVRTRTYHYPDGLVDYIKHLNRTKTPIHSSVIGFSGKGEGH---EVEIAMQWNS 174

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                + ++ NTI T EGGTHE G R ALT  + KYA   +   ++   +  DD+     
Sbjct: 175 GYAESVHTFANTINTHEGGTHEEGFRAALTATVNKYAADKKLVKEKDGKLTGDDIREGLA 234

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            ++SV + +P+F GQTKTKL + + +  V+ A  +   H+   NP EA  ++   ++ ++
Sbjct: 235 AVISVKVSDPQFEGQTKTKLGNTEVKSFVQKACNEHLGHWFEANPAEAKTIIRKAVDSAQ 294

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R+  RK RE V RKTA     LPGKLADC  N     E++IVEGDSAGGSAK  R+   
Sbjct: 295 ARIAARKARELVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSAGGSAKSGRDSMY 354

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           QA+LP+RGKI+NV  A  +++  N ++  ++ A G     ++  + LRY K+++
Sbjct: 355 QAILPIRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDIKKLRYHKIVL 408


>gi|148536428|gb|ABQ85766.1| DNA gyrase subunit B [Aliivibrio fischeri]
          Length = 370

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 134/376 (35%), Positives = 206/376 (54%), Gaps = 14/376 (3%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS+++ +T+ R   I  Q +  G P +PL    K  +  GT+I F P 
Sbjct: 1   GLHGVGVSVVNALSEKVELTIHRAGEIHQQVYHHGEPEAPLAVIGKT-DTTGTKIRFWPS 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            + F +   F    L K  +  ++L+  V       +E        + + F + GG++ +
Sbjct: 60  EETFTNVV-FVYEILAKRLRELSFLNSGVSIKLQDMRE------EDKADHFMYEGGIQAF 112

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           +Q    N++ I  ++F   +E++     +VE ++ W +     I  + N I   +GGTH 
Sbjct: 113 VQHLNRNKTPIHQKVFHFDSERED--GISVEVSMQWNDGFQENIYCFTNNIPQRDGGTHL 170

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS
Sbjct: 171 AGFRSALTRTLNTFMDKEGFSKKAKAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVS 230

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLR 448
            + +  VE+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK A+    
Sbjct: 231 SEVKSAVESAMGEKLSEFLAENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDIAG 290

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ 
Sbjct: 291 LPGKLADCQEKDPGLSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 350

Query: 509 NNQQIMDLVQALGCRT 524
           ++Q++  L+ ALGC  
Sbjct: 351 SSQEVGTLITALGCGI 366


>gi|15530009|gb|AAL01492.1| gyrase B [Shewanella baltica]
          Length = 369

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 133/376 (35%), Positives = 205/376 (54%), Gaps = 15/376 (3%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS +L +T+ R   ++ Q ++ G+P +P+++        GT I F P 
Sbjct: 1   GLHGVGVSVVNALSKKLQMTIRRAGKVYEQFYTHGVPDAPIKEIGDATK-TGTEIRFWPS 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
              F D   F    L K  +  ++L+  V      +++        + E F + GG+  +
Sbjct: 60  EDTFSDV-EFHFEILAKRVRELSFLNSGVGIRLVDERDN-------KNEFFKYEGGISAF 111

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           +     N++ ++ ++F    E++     TVE A+ W +     I  + N I   +GGTH 
Sbjct: 112 VDYLNRNKTPVNKDVFHFMQERED--GITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHL 169

Query: 332 SGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G R ALTR +  Y E      K   S   DD       ++SV + +P+F+ QTK KLVS
Sbjct: 170 VGFRSALTRNLNSYMENEGYNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVS 229

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLR 448
            + +  VE  + +  + YL++NP +A  ++  +++ +  R   RK R    RK A+    
Sbjct: 230 SEVKTAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGG 289

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ 
Sbjct: 290 LPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 349

Query: 509 NNQQIMDLVQALGCRT 524
           ++Q++  L+ ALGC  
Sbjct: 350 SSQEVATLITALGCGI 365


>gi|19909591|dbj|BAB86991.1| DNA gyrase subunit B [Brevundimonas variabilis]
          Length = 398

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 139/407 (34%), Positives = 214/407 (52%), Gaps = 20/407 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV----- 199
            ++Y++SGGLHGVG+SVVNALSD L + + R       +F RG  ++PL           
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSDYLELKIYRNGKQHEMRFERGDTVTPLRVTGDAPMREN 60

Query: 200 -RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
            +   GT++TF P    F     FD   L    +  A+L+  V       +         
Sbjct: 61  GKVLSGTQVTFFPSITTFA-HIDFDLKTLEHRLRELAFLNSGVVIKLQDHR-----GAEK 114

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
            +E  ++ GG++ +++   +++S I  ++   + +K       ++ A+ W +     +  
Sbjct: 115 FEEILHYEGGVEAFVRHLDKSKSPILKDVIVIRGKKDNI---EIDLALWWNDSYHETMLC 171

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH S  R +LTR +  Y E +    K  ++   +D       +LSV + 
Sbjct: 172 FTNNIPQRDGGTHLSAFRTSLTRVMSSYMESSGALKKEKVAPSGEDAREGLTCVLSVKVP 231

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           +P+F+ QTK KLVS + +  VE    +    +  ++PIEA  ++  +IE +  R   RK 
Sbjct: 232 DPKFSSQTKDKLVSSEVRPAVEGLCTEGLSQWFEEHPIEAKLVVAKIIEAASAREAARKA 291

Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           R+   RK+A+    LPGKLADC +     +ELFIVEGDSAGGSAKQARNR NQAVLPLRG
Sbjct: 292 RDLTRRKSALDISSLPGKLADCQERDPAKSELFIVEGDSAGGSAKQARNRENQAVLPLRG 351

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVII 540
           KILNV  A  +++ +++ I  L+ ALG          + LRY K+I+
Sbjct: 352 KILNVERARFDRMLSSELIGTLILALGTGIGRDDFNADKLRYHKIIL 398


>gi|327200407|gb|AEA36083.1| DNA gyrase subunit B [Rhizobium tropici]
          Length = 358

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 137/367 (37%), Positives = 207/367 (56%), Gaps = 13/367 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  L + + RQ  I    F+ G+  +PL++     ++ GT ++F
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLKIRRQGKIHEMSFTHGVADAPLKETGDAGDETGTEVSF 60

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F     FD + L    +  A+L+  V+   +  +    K     +EE  + GGL
Sbjct: 61  MPSSETF-TMIEFDYSTLEHRLRELAFLNSGVRILLTDKRHSDVK-----QEELLYDGGL 114

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328
           + ++      +  +  +  + ++EK G    TVE A+ W +   E    + N I   +GG
Sbjct: 115 EAFVSYLDRAKKPLVQKPVSIRSEKDGI---TVEVAMWWNDSYHENVLCFTNNIPQRDGG 171

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR I  YA+ +    K  +++  DD       +LSV + +P+F+ QTK K
Sbjct: 172 THMAGFRAALTRQITSYADSSGITKKEKVTLTGDDCREGLTAVLSVKVPDPKFSSQTKDK 231

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           LVS + +  VE+ + +    +L ++P EA  L+  V+E +  R   RK RE   RK A+ 
Sbjct: 232 LVSSEVRPVVESLVNEALSTWLEEHPSEAKVLVGKVVEAAAAREAARKARELTRRKGALD 291

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS+     +E+F+VEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  +
Sbjct: 292 IASLPGKLADCSERDPAKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 351

Query: 506 KIRNNQQ 512
           K+ ++Q+
Sbjct: 352 KMLSSQE 358


>gi|294963304|gb|ADF50139.1| DNA gyrase subunit B [Bacillus cereus]
          Length = 364

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 127/371 (34%), Positives = 200/371 (53%), Gaps = 14/371 (3%)

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS EL V V R+  I  QK+ RGIP++ L+      ++ GT   F+PDP+IF +   
Sbjct: 1   VNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETIV 59

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++ 
Sbjct: 60  YEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSKQ 113

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340
            I  E    +  K G     VE A+ + E       S+ N I T EGGTHE G + ALTR
Sbjct: 114 PIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTR 170

Query: 341 GIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E+
Sbjct: 171 VINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITES 230

Query: 399 ALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
              + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPGKLADCS
Sbjct: 231 VFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCS 290

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  ++
Sbjct: 291 SKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTII 350

Query: 518 QALGCRTRSQY 528
            A+G      +
Sbjct: 351 TAIGTNMEGDF 361


>gi|294963326|gb|ADF50150.1| DNA gyrase subunit B [Bacillus cereus]
          Length = 364

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 127/371 (34%), Positives = 200/371 (53%), Gaps = 14/371 (3%)

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS EL V V R+  I  QK+ RGIP++ L+      ++ GT   F+PDP+IF +   
Sbjct: 1   VNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETIV 59

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++ 
Sbjct: 60  YEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSKQ 113

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340
            I  E    +  K G     VE A+ + E       S+ N I T EGGTHE G + ALTR
Sbjct: 114 PIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTR 170

Query: 341 GIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E+
Sbjct: 171 VINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITES 230

Query: 399 ALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
              + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPGKLADCS
Sbjct: 231 VFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCS 290

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  ++
Sbjct: 291 SKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTII 350

Query: 518 QALGCRTRSQY 528
            A+G      +
Sbjct: 351 TAIGTNMDGDF 361


>gi|319958744|gb|ADV90542.1| DNA gyrase subunit B [Bacillus subtilis]
          Length = 357

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 131/364 (35%), Positives = 198/364 (54%), Gaps = 13/364 (3%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LS EL VTV R   I  Q + RG+P+S LE   +  +  GT   F PDP+IF +   +D 
Sbjct: 1   LSTELDVTVHRDGKIHRQTYKRGVPVSDLEIIGET-DHTGTTTHFVPDPEIFTETTEYDY 59

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             L    +  A+L+  V       +E  E+        +++ GG+K+Y++    ++ ++ 
Sbjct: 60  DLLANRVRELAFLTKGVNITIEDKREGQERKNE-----YHYEGGIKSYVEYLNRSKEVVH 114

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
            E    + EK G    TVE A+ + +     I S+ N I T EGGTHE+G +  LTR I 
Sbjct: 115 EEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVIN 171

Query: 344 KYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            YA      +    ++  DD+      I+S+   +P+F GQTKTKL + +A+   +    
Sbjct: 172 DYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFS 231

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNI 460
              + ++++NP  A K+++  +  +  R+  +K RE   RK+A+    LPGKLADCS   
Sbjct: 232 AAMETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKD 291

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  ++ AL
Sbjct: 292 PSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITAL 351

Query: 521 GCRT 524
           G   
Sbjct: 352 GTGI 355


>gi|193788027|dbj|BAG50514.1| DNA gyrase subunit B [Listonella anguillarum]
          Length = 369

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 134/375 (35%), Positives = 206/375 (54%), Gaps = 14/375 (3%)

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS+++ +T+ R   I +Q +  G+P +PL    +  +K GT + F P  
Sbjct: 1   LHGVGVSVVNALSEKVLLTIYRNGAIHTQTYCHGVPQAPLAVVGET-DKTGTTLRFWPSA 59

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           + F +   F    L K  +  ++L+  V      ++E  +K      + F + GG+K ++
Sbjct: 60  ETFTNI-EFHYDILAKRLRELSFLNSGVSIKLLDEREEDKK------DHFRYEGGIKAFV 112

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
                N++ I  ++F   +E+      TVE A+ W +     I  + N I   +GG H +
Sbjct: 113 GHLNRNKTPIHEKVFHFSSERDD--GITVEVAMQWNDGFQENIYCFTNNIPQRDGGAHLA 170

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS 
Sbjct: 171 GFRGALTRTLNTFMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSS 230

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRL 449
           + +  VE+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK A+    L
Sbjct: 231 EVKTAVESAMGEKLAEFLAENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGL 290

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ +
Sbjct: 291 PGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLS 350

Query: 510 NQQIMDLVQALGCRT 524
           +Q++  L+ ALGC  
Sbjct: 351 SQEVATLITALGCGI 365


>gi|193788031|dbj|BAG50516.1| DNA gyrase subunit B [Listonella anguillarum]
 gi|193788033|dbj|BAG50517.1| DNA gyrase subunit B [Listonella anguillarum]
 gi|193788035|dbj|BAG50518.1| DNA gyrase subunit B [Listonella anguillarum]
 gi|193788037|dbj|BAG50519.1| DNA gyrase subunit B [Listonella anguillarum]
 gi|193788039|dbj|BAG50520.1| DNA gyrase subunit B [Listonella anguillarum]
          Length = 369

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 134/375 (35%), Positives = 206/375 (54%), Gaps = 14/375 (3%)

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS+++ +T+ R   I +Q +  G+P +PL    +  +K GT + F P  
Sbjct: 1   LHGVGVSVVNALSEKVLLTIYRNGAIHTQTYCHGVPQAPLAVVGET-DKTGTTLRFWPSA 59

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           + F +   F    L K  +  ++L+  V      ++E  +K      + F + GG+K ++
Sbjct: 60  ETFTNI-EFHYDILAKRLRELSFLNSGVSIKLFDEREEDKK------DHFRYEGGIKAFV 112

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
                N++ I  ++F   +E+      TVE A+ W +     I  + N I   +GG H +
Sbjct: 113 GHLNRNKTPIHEKVFHFSSERDD--GITVEVAMQWNDGFQENIYCFTNNIPQRDGGAHLA 170

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS 
Sbjct: 171 GFRGALTRTLNTFMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSS 230

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRL 449
           + +  VE+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK A+    L
Sbjct: 231 EVKTAVESAMGEKLAEFLAENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGL 290

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ +
Sbjct: 291 PGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLS 350

Query: 510 NQQIMDLVQALGCRT 524
           +Q++  L+ ALGC  
Sbjct: 351 SQEVATLITALGCGI 365


>gi|22761995|dbj|BAC11784.1| gyrase B [Helicobacter pylori]
 gi|22762001|dbj|BAC11787.1| gyrase B [Helicobacter pylori]
          Length = 389

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 145/399 (36%), Positives = 222/399 (55%), Gaps = 13/399 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NK 202
           N TY++SGGLHGVG+SVVNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +   +
Sbjct: 1   NDTYKVSGGLHGVGVSVVNALSKHLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKE 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT I F PD  +      F A  L K  +  AYL+  +K  +  +K          +E 
Sbjct: 61  SGTAIEFFPDESVMEVV-EFQAGILQKRFKEMAYLNDGLKISFKEEK-------TQLQET 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
           +++  GLK +++   + + L++  I     +++      V  A A  + N    S+ N I
Sbjct: 113 YFYEDGLKQFVKDSAK-KELLTPIISFKSMDEETRTSIEVALAYAD-DYNENTLSFVNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            T EGGTHE+G ++ L++ I +Y +     R    IS+D+    + ++S+ + EP F GQ
Sbjct: 171 KTSEGGTHEAGFKMGLSKAILQYIDTNIKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TK+KL S  A+  V   + D    +L +NP EA  +    +  ++ R   +K RE   +K
Sbjct: 231 TKSKLGSSYARALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKK 290

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC       +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  
Sbjct: 291 DNLSVGTLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEK 350

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +   KI  +++I +++ A GC  +  +  E LRY K+II
Sbjct: 351 SHLSKILKSEEIKNMITAFGCGIQESFDIERLRYHKIII 389


>gi|270057067|gb|ACZ59655.1| DNA gyrase subunit beta [Aeromonas salmonicida]
          Length = 357

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 132/368 (35%), Positives = 205/368 (55%), Gaps = 15/368 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++     +  GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPT 60

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   +    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 61  IFTDTL-YHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVE 112

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 113 YLNQNKTPIHPKVFHFSTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 169

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 170 FRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 229

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 230 VKTAVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 289

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 290 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 349

Query: 511 QQIMDLVQ 518
           Q++  L+ 
Sbjct: 350 QEVGTLIT 357


>gi|319958730|gb|ADV90535.1| DNA gyrase subunit B [Bacillus pumilus]
          Length = 365

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 129/374 (34%), Positives = 196/374 (52%), Gaps = 13/374 (3%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LS  L VTV R   I  Q+F RG+P   LE   +  +  GT   F PDP+IF +   FD 
Sbjct: 1   LSTTLDVTVYRDGKIHYQQFKRGVPAGDLEIIGET-DVTGTTTHFVPDPEIFTETIEFDY 59

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             L    +  A+L+  V       +E  E+        + + GG+K+Y++    ++ ++ 
Sbjct: 60  DTLANRVRELAFLTKGVNIIIEDLREGKERRNE-----YCYEGGIKSYVEHLNRSKEVVH 114

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIK 343
            E    + EK G    T+E A+ + +       S+ N I T EGGTHE+G +  LTR I 
Sbjct: 115 EEPVYIEGEKDGI---TIEVALQYNDSYSSNIYSFANNINTYEGGTHEAGFKTGLTRVIN 171

Query: 344 KYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            YA      +    ++  +D+      I+S+   +P+F GQTKTKL + +A+   ++   
Sbjct: 172 DYARKNGVFKDGDSNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDSLFS 231

Query: 402 DPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
           +  + +L++NP  A K++E  V+        ++ +    RK+A+    LPGKLADCS   
Sbjct: 232 EALEKFLLENPDAAKKIVEKGVMAARARMAAKKARELTRRKSALEVSSLPGKLADCSSKD 291

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  ++ AL
Sbjct: 292 PSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITAL 351

Query: 521 GCRTRSQYREEDLR 534
           G      +  E  R
Sbjct: 352 GTGIGEDFTLEKAR 365


>gi|193788029|dbj|BAG50515.1| DNA gyrase subunit B [Listonella anguillarum]
          Length = 369

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 134/375 (35%), Positives = 206/375 (54%), Gaps = 14/375 (3%)

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS+++ +T+ R   I +Q +  G+P +PL    +  +K GT + F P  
Sbjct: 1   LHGVGVSVVNALSEKVLLTIYRNGAIHTQTYCHGVPQAPLAVVGET-DKTGTTLRFWPSA 59

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           + F +   F    L K  +  ++L+  V      ++E  +K      + F + GG+K ++
Sbjct: 60  ETFTNI-EFHYDILAKRLRELSFLNSGVSIKLFDEREEDKK------DHFRYEGGIKAFV 112

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
                N++ I  ++F   +E+      TVE A+ W +     I  + N I   +GG H +
Sbjct: 113 GHLNRNKTPIHEKVFHFSSERDD--GITVEVAMQWNDGFQENIYCFTNNIPQRDGGAHLA 170

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS 
Sbjct: 171 GFRGALTRTLNTFMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSS 230

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRL 449
           + +  VE+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK A+    L
Sbjct: 231 EVKSAVESAMGEKLAEFLAENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGL 290

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ +
Sbjct: 291 PGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLS 350

Query: 510 NQQIMDLVQALGCRT 524
           +Q++  L+ ALGC  
Sbjct: 351 SQEVATLITALGCGI 365


>gi|119226134|dbj|BAF41046.1| DNA gyrase subunit B [Rhodococcus equi]
 gi|219944542|gb|ACL55045.1| DNA gyrase B subunit [Rhodococcus equi]
          Length = 420

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 129/426 (30%), Positives = 206/426 (48%), Gaps = 37/426 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  Y +SGGLHGVGISVVNALS ++ V +      +SQ +    P   ++ +        
Sbjct: 1   SDAYAVSGGLHGVGISVVNALSTKVEVDINVDGYRWSQTYEHAKPGPLVQGEPTTETGT- 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------ 258
             + F  DP+IF     ++   + +  Q  A+L+  +    + ++   ++          
Sbjct: 60  -TVRFWADPEIFETTT-YNFETVARRLQEMAFLNKGLTITLTDERVAEDEVTDDVVPVTA 117

Query: 259 ---------------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                                +   +++PGGL+ Y++     +  I + +     +  G 
Sbjct: 118 EAPKTATETEEEAAAPKAPKVKSRVYHYPGGLEDYVRFINRTKQAIHNSVVGFTAKGTGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRA 354
               +E A+ W       + ++ NTI T EGGTHE G R ALT  +KKY   +     + 
Sbjct: 178 ---ELEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTSVVKKYAKDKKLVKDKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             +  DD+      I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +
Sbjct: 235 PELTGDDIREGLAAIISVKVAEPQFEGQTKTKLGNTEVKSFVQKACNENIAHWFEANPAD 294

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   +  ++ R   RK RE V RK+A     LPGKLADC  N     E++IVEGDS
Sbjct: 295 AKTIVTKAVSSAQARTAARKARELVRRKSATDIGGLPGKLADCRSNDPSKCEIYIVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    L
Sbjct: 355 AGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDISKL 414

Query: 534 RYEKVI 539
           RY K++
Sbjct: 415 RYHKIV 420


>gi|23451172|gb|AAN32691.1| DNA gyrase subunit B [Aeromonas eucrenophila]
          Length = 372

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 135/382 (35%), Positives = 206/382 (53%), Gaps = 15/382 (3%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++      G P +PL++     +  GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEXXXHLGEPQAPLKQIGDSSSGTGTEVRFWPSPT 60

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   +    L K  +  ++L+  V      +++  E         F + GG+K + +
Sbjct: 61  IFSDTL-YHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFXE 112

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 113 YLNQNKTPIHQKVFHFSTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 169

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R +LTR +  Y        K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 170 FRTSLTRTLNTYMNKEDYSKKAKSAANGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 229

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 230 VKTAVEQAMGEKLAEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 289

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 290 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 349

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 350 QEVGTLITALGCGIGRDEYNPD 371


>gi|209863341|gb|ACI88770.1| DNA gyrase subunit B [Aeromonas sp. JH78]
          Length = 366

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 134/377 (35%), Positives = 207/377 (54%), Gaps = 15/377 (3%)

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++     +  GT + F P P IF
Sbjct: 1   VGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQMGDSSSGTGTEVRFWPSPTIF 60

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            D   +    L K  +  ++L+  V      +++  E         F + GG+K +++  
Sbjct: 61  TDTL-YHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVEYL 112

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G R
Sbjct: 113 NQNKTPIHPKVFHFSTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFR 169

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS + +
Sbjct: 170 TALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVK 229

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
             VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGK
Sbjct: 230 TAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGK 289

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q+
Sbjct: 290 LADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQE 349

Query: 513 IMDLVQALGCRTRSQYR 529
           +  L+ ALGC       
Sbjct: 350 VGTLITALGCGIGRDEY 366


>gi|51571567|emb|CAH18950.1| gyrase B [Corallococcus coralloides]
          Length = 369

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 126/370 (34%), Positives = 194/370 (52%), Gaps = 16/370 (4%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y++SGGLHGVG++ VN LS+   V V R   I+ Q ++RG+     ++     +KRGT
Sbjct: 1   GAYKVSGGLHGVGVTCVNFLSEWFKVRVQRAGKIYEQSYARGVSNGSPQEVG-TTDKRGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            I F+PD  +      F+   L +  +  A+L+  +      ++   E         F F
Sbjct: 60  TIHFKPDSMVMET-VDFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD-------FKF 111

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG+ ++++   + +  +  +    K+E++G    ++E A+ W +     I ++ N I T
Sbjct: 112 EGGISSFVEYLNKAKEALHDKPVYIKSEREGV---SLEIAMQWNDGYDERIFTFANNINT 168

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQ 382
            EGG+H SG + ALTR +  YAE     + +      +D       ++SV +  P+F GQ
Sbjct: 169 HEGGSHLSGFKAALTRTLNSYAEKGGVWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQ 228

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRK 441
           TKTKL + + +  VE  + D    +L +NP  A K++  +          R+ +  V RK
Sbjct: 229 TKTKLGNSEVKGLVEQMVNDQLASFLEENPPLAKKVVAKIGDACRARIAARKARETVRRK 288

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
             +    LPGKLADC     H +EL+IVEGDSAGGSAKQ R+R NQA+LPLRGKILNV  
Sbjct: 289 GVLDGGGLPGKLADCQSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEK 348

Query: 502 AGSEKIRNNQ 511
           A  EK+  + 
Sbjct: 349 ARFEKMLTSA 358


>gi|319958752|gb|ADV90546.1| DNA gyrase subunit B [Bacillus pumilus]
          Length = 365

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 128/374 (34%), Positives = 196/374 (52%), Gaps = 13/374 (3%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           +S  L VTV R   I  Q+F RG+P   LE   +  +  GT   F PDP+IF +   FD 
Sbjct: 1   ISTTLDVTVYRDGKIHYQQFKRGVPAGDLEIIGET-DVTGTTTHFVPDPEIFTETIEFDY 59

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             L    +  A+L+  V       +E  E+        + + GG+K+Y++    ++ ++ 
Sbjct: 60  DTLANRVRELAFLTKGVNIIIEDLREGKERRNE-----YCYEGGIKSYVEHLNRSKEVVH 114

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIK 343
            E    + EK G    T+E A+ + +       S+ N I T EGGTHE+G +  LTR I 
Sbjct: 115 EEPVYIEGEKDGI---TIEVALQYNDSYSSNIYSFANNINTYEGGTHEAGFKTGLTRVIN 171

Query: 344 KYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            YA      +    ++  +D+      I+S+   +P+F GQTKTKL + +A+   ++   
Sbjct: 172 DYARKNGVFKDGDSNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDSLFS 231

Query: 402 DPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
           +  + +L++NP  A K++E  V+        ++ +    RK+A+    LPGKLADCS   
Sbjct: 232 EALEKFLLENPDAAKKIVEKGVMAARARMAAKKARELTRRKSALEVSSLPGKLADCSSKD 291

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  ++ AL
Sbjct: 292 PSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITAL 351

Query: 521 GCRTRSQYREEDLR 534
           G      +  E  R
Sbjct: 352 GTGIGEDFTLEKAR 365


>gi|295979573|dbj|BAJ07459.1| DNA gyrase subunit B [Ralstonia sp. 2S2]
 gi|295979575|dbj|BAJ07460.1| DNA gyrase subunit B [Ralstonia sp. 3B1]
          Length = 277

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 92/288 (31%), Positives = 147/288 (51%), Gaps = 33/288 (11%)

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIP--VENHPKFP-NKSTLEIILTTLHAGGKFDNS 146
           +AG+   I+V++  +  +++ DNGRGIP  V+   K    +S  EI +T LHAGGKF+ +
Sbjct: 1   LAGWCTEIQVTIHSDNSISITDNGRGIPPLVKFDDKHEPKRSAAEIAMTELHAGGKFNQN 60

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG-----------------IP 189
           +Y++SGGLHGVG+S VNALS  L +TV R       +F++G                 + 
Sbjct: 61  SYKVSGGLHGVGVSCVNALSKWLRLTVRRDGQAHLLEFAQGAVQNRLVETVNGPDGQPVE 120

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
           +SP++      +KRGT + F  D +IF     F    L K  +  ++L+  V    +  +
Sbjct: 121 VSPMKIIGPT-DKRGTEVHFLADEEIF-THVEFHYEILSKRIRELSFLNNGVHIRLTDQR 178

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
                    ++E+F F GG+K +++     +S +   IF   TEK G     VE ++ W 
Sbjct: 179 -------TGKEEDFAFSGGVKGFVEYINRGKSTLHPNIFYANTEKDGI---AVEVSMQWN 228

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
           +    ++  + N I   +GGTH +GLR A+TR I KY E  +  +   
Sbjct: 229 DGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEENEIAKKAK 276


>gi|19909571|dbj|BAB86981.1| DNA gyrase subunit B [Brevundimonas bacteroides]
          Length = 398

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 137/407 (33%), Positives = 211/407 (51%), Gaps = 20/407 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV----- 199
            ++Y++SGGLHGVG+SVVNALSD L + + R       +F RG  +  L           
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSDWLKLVIFRNGKRHEMRFERGDTVESLRVTGDAPLRDD 60

Query: 200 -RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
            R   GT++TF P    F     FD   L    +  A+L+  V       +        P
Sbjct: 61  GRVLSGTQVTFYPSVTTFS-HIDFDLKTLEHRLRELAFLNSGVVIKLQDHR-----GAEP 114

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
                ++ GG++ +++   ++++ I  ++   +  K       ++ A+ W +     +  
Sbjct: 115 VDILLHYEGGVEAFVRHLDKSKTPILKDVIVIRGRKDNI---EIDLALWWNDSYHETMLC 171

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH S  R +LTR +  Y E +    K  ++   +D       +LSV + 
Sbjct: 172 FTNNIPQRDGGTHLSAFRASLTRVMSAYMESSGALKKEKVAPTGEDAREGLTCVLSVKVP 231

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           +P+F+ QTK KLVS + +  VE    +    +  ++P+EA +++  +IE +  R   RK 
Sbjct: 232 DPKFSSQTKDKLVSSEVRPAVEGLCSEGLSQWFEEHPVEAKQVVAKIIEAASAREAARKA 291

Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           R+   RK+A+    LPGKLADC +     +ELFIVEGDSAGGSAKQARNR NQAVLPLRG
Sbjct: 292 RDLTRRKSAMDISSLPGKLADCQERDPAKSELFIVEGDSAGGSAKQARNRENQAVLPLRG 351

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVII 540
           KILNV  A  +++ +++ I  L+ ALG          + LRY K+I+
Sbjct: 352 KILNVERARFDRMLSSELIGTLILALGTGIGRDDFNADKLRYHKIIL 398


>gi|62085672|gb|AAX63228.1| DNA gyrase subunit B [Gordonia alkanivorans]
          Length = 412

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 130/416 (31%), Positives = 204/416 (49%), Gaps = 38/416 (9%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
            +Y +SGGLHGVGISVVNALS ++ + +AR    ++Q +S   P +   ++     K GT
Sbjct: 1   DSYAVSGGLHGVGISVVNALSTKVELEIARDGHNWTQTYSYAKPGAL--EQGDATRKTGT 58

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------------- 249
            + F PDP IF +   F+A  + +  Q  A+L+  +    +  +                
Sbjct: 59  TVRFWPDPDIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEPPGDPNGDEDA 118

Query: 250 -------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG 296
                        E A+    P+   +++P GL  Y++     +  I + +     + +G
Sbjct: 119 PTTDVAEVVLSETEKAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGFSAKGEG 178

Query: 297 THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKR 353
                VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++
Sbjct: 179 H---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLIKEK 235

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
              +  DD+      ++S  + +P+F GQTKTKL + + +  V+    +   H+   NP 
Sbjct: 236 DGKLTGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEANPA 295

Query: 414 EATKLLEWVIER-SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
           EA  +++   +        RR +  V RKTA     LPGKLADC  N     E++IVEGD
Sbjct: 296 EAKIIIKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGD 355

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528
           SAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++
Sbjct: 356 SAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEF 411


>gi|294963296|gb|ADF50135.1| DNA gyrase subunit B [Bacillus cereus]
          Length = 364

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 127/367 (34%), Positives = 198/367 (53%), Gaps = 14/367 (3%)

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS EL V V R+  I  QK+ RGIP++ L+       + GT   F+PDP+IF +   
Sbjct: 1   VNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-EQTGTITRFKPDPEIFQETIV 59

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++ 
Sbjct: 60  YEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSKQ 113

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340
            I  E    +  K G     VE A+ + E       S+ N I T EGGTHE G + ALTR
Sbjct: 114 PIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTR 170

Query: 341 GIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E+
Sbjct: 171 VINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITES 230

Query: 399 ALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
              + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPGKLADCS
Sbjct: 231 VFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCS 290

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  ++
Sbjct: 291 SKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTII 350

Query: 518 QALGCRT 524
            A+G   
Sbjct: 351 TAIGTNM 357


>gi|19909629|dbj|BAB87010.1| DNA gyrase subunit B [Rhodoblastus acidophilus]
 gi|19909697|dbj|BAB87044.1| DNA gyrase subunit B [bacterium MBIC3366]
          Length = 397

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 148/406 (36%), Positives = 222/406 (54%), Gaps = 19/406 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV----- 199
            ++Y++SGGLHGVG+SVVNALS +L + + R+       F+ G  ++PL+   +      
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSSKLSLRIWREGLEHEVDFAHGDAVAPLKVVGEAPLEEG 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
           + KRGT +TF P  + F     FD A +    +  A+L+  V+   S  +    K     
Sbjct: 61  KPKRGTSVTFLPSLETFSAI-EFDYATIEHRLRELAFLNSGVRIVLSDSRHAERKV---- 115

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSY 318
            E  ++ GGL+ +++     +S + S+    + E+ G    TVE A+ W +   E    +
Sbjct: 116 -EILHYEGGLEAFVRYLDRTKSPLISKPIQMRGERDGI---TVEAALWWNDSYHENVLVF 171

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIRE 376
            N I   +GGTH +G R ALTR +  YAE +   +   +    +D       ++SV + +
Sbjct: 172 TNNIPQRDGGTHLAGFRAALTRQVTGYAEHSGLTKREKVDLTGEDCREGLTCVVSVKVPD 231

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F+ QTK KLVS + +  VE  + +    +L ++P EA  ++  V+E +  R   RK R
Sbjct: 232 PKFSSQTKDKLVSSEVRPVVEGVINETLGQWLEESPSEAKTVVGKVVEAASAREAARKAR 291

Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E   RK A+    LPGKLADC +      ELFIVEGDSAGGSAKQ RNR  QAVLPLRGK
Sbjct: 292 ELTRRKGALDVANLPGKLADCQERDPAKAELFIVEGDSAGGSAKQGRNREYQAVLPLRGK 351

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVII 540
           ILNV  A  +K+ +++QI  L+ ALG      ++  + LRY K+I+
Sbjct: 352 ILNVERARFDKMLSSEQIGTLITALGAGIGHDEFNIDKLRYHKIIV 397


>gi|294963294|gb|ADF50134.1| DNA gyrase subunit B [Bacillus amyloliquefaciens]
          Length = 365

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 135/372 (36%), Positives = 201/372 (54%), Gaps = 13/372 (3%)

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  L VTV R   I  Q + RG+P++ LE      +K GT   F PDP+IF +   
Sbjct: 1   VNALSTTLDVTVHRDGKIHYQAYERGVPVADLEVIGDT-DKTGTITHFVPDPEIFKETTV 59

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +D   L    +  A+L+  V       +E  E+        +++ GG+K+Y++    ++ 
Sbjct: 60  YDYDLLSNRVRELAFLTKGVNITIEDKREGQERKNE-----YHYEGGIKSYVEYLNRSKE 114

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
           ++  E    + EK G    TVE A+ + +     I S+ N I T EGGTHE+G +  LTR
Sbjct: 115 VVHEEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTR 171

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  YA       +   ++  DD+      I+S+   +P+F GQTKTKL + +A+   + 
Sbjct: 172 VINDYARRKGIFKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDT 231

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
                 + +L++NP  A K++E  +  +  R+  +K RE   RK+A+    LPGKLADCS
Sbjct: 232 LFSSALETFLLENPDSARKIVEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCS 291

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  ++
Sbjct: 292 SKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMI 351

Query: 518 QALGCRTRSQYR 529
            ALG      + 
Sbjct: 352 TALGTGIGEDFN 363


>gi|56675192|emb|CAI34898.1| DNA gyrase subunit B [Aeromonas caviae]
          Length = 371

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 138/382 (36%), Positives = 208/382 (54%), Gaps = 16/382 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L K  +   +L+ RV      +++  E         F + GG+K +++
Sbjct: 60  IFSDTL-FHYEILAKRLRELFFLNFRVFIRLMDERDGRE-------AHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 169 FRTALTRTLNNYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 229 VKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGD AGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 GKLADCQEKDPALSELYIVEGDXAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 348

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 349 QEVGTLITALGCGIGRDEYNPD 370


>gi|115500944|dbj|BAF34142.1| B subunit gyrase [Azorhizophilus paspali]
          Length = 386

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 139/398 (34%), Positives = 208/398 (52%), Gaps = 18/398 (4%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
            T+++ GGLHGV +SVVNALS+EL +T+ R   ++ Q +  G+P +PL       +  GT
Sbjct: 1   DTHKVFGGLHGVRVSVVNALSEELVLTIRRDGKVWEQTYVHGVPQAPLATVGDT-DGTGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           ++ F+P  + F +   F    L K  +  ++L+  V      ++   E       E F +
Sbjct: 60  QVHFKPSAETFHNIH-FSWDVLAKRLRELSFLNSGVGIVLKDERSGKE-------ELFKY 111

Query: 266 PGGLKTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
            GGLK ++     N++ +S       + E+ G     VE  + W       I  + N I 
Sbjct: 112 EGGLKAFVNYLNTNKNAVSQVFHFNVQREEDGVC---VEVRLQWNHRFNENILCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDL--MISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  Y       +     + D         I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLAGFRSALTRQVNNYLGQEGLTKVNKPTAADDAAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    R
Sbjct: 229 QTKDKLVSSEVKTAVEQEMGKCFGDFLLENPNEARAVVGKMIDAARAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR  QA+LPL+GKILNV 
Sbjct: 289 KGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537
            A  +K+ ++ ++  L+ ALGC   R +Y    LRY  
Sbjct: 349 KARFDKMLSSAEVGTLITALGCGIGREEYNISKLRYHN 386


>gi|95108289|emb|CAK18166.1| DNA gyrase subunit B [Aeromonas salmonicida subsp. pectinolytica]
          Length = 372

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 135/381 (35%), Positives = 209/381 (54%), Gaps = 15/381 (3%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+ VVNALSD+L +T+ R   ++ Q +  G P++PL++     +  GT + F P P I
Sbjct: 2   GVGVLVVNALSDKLLLTIRRNGHVYEQTYHLGEPVAPLKQIGDSNSGTGTEVRFWPSPTI 61

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F D   +    L K  +  ++L+  V      +++  E         F + GG+K +++ 
Sbjct: 62  FTDTL-YHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVEY 113

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G 
Sbjct: 114 LNQNKTPIHPKVFHFSTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGF 170

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS + 
Sbjct: 171 RTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEV 230

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
           +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPG
Sbjct: 231 KTAVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPG 290

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q
Sbjct: 291 KLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQ 350

Query: 512 QIMDLVQALGCRTRSQYREED 532
           ++  L+ ALGC         D
Sbjct: 351 EVGTLITALGCGIGRDEYNPD 371


>gi|161339230|gb|ABX64366.1| GyrB [Gordonia sp. CC-273-7]
          Length = 415

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 132/420 (31%), Positives = 202/420 (48%), Gaps = 39/420 (9%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD+  Y +SGGLHGVGISVVNALS ++ + +A     + Q +S   P    +      
Sbjct: 1   GKFDSDAYAVSGGLHGVGISVVNALSTKVELEIANDGFNWEQTYSYAKPGPLEK--GDAT 58

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP-- 258
            K GT + F PDP+IF +   F+A  + +  Q  A+L+  +    +  +  A +      
Sbjct: 59  RKTGTTVRFWPDPEIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEAPGDAN 118

Query: 259 ----------------------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
                                       +   +++P GL  Y++     +  I + +   
Sbjct: 119 GDDEAAPTTEVAETVKTETEKAAAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHTTVIGF 178

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             + +G     VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   
Sbjct: 179 NAKGEGH---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEK 235

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
           +   ++   +  DD+      ++SV + +P+F GQTKTKL + + +  V+    +   H+
Sbjct: 236 KLIKEKDGKLTGDDIREGLAAVISVKVADPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHW 295

Query: 408 LVQNPIEATKLLEWVIER-SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
              NP EA  +++   +        RR +  V RKTA     LPGKLADC  N     E+
Sbjct: 296 FEANPAEAKIIIKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEV 355

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS 526
           +IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     
Sbjct: 356 YIVEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHD 415


>gi|93004072|emb|CAI94342.2| gyrase B [Helicobacter trogontum]
          Length = 368

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 129/380 (33%), Positives = 213/380 (56%), Gaps = 16/380 (4%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS +L +T+ + N I+ Q+F +GIP++ LE   + +   GT I F PD
Sbjct: 1   GLHGVGVSVVNALSCKLIMTIHKNNKIYRQEFEKGIPVTDLEIIGETKKH-GTTIEFFPD 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P+I      FD+  L +  +  AYL+  +K  +  +++ ++         F+F GGL  +
Sbjct: 60  PEIMEVT-EFDSNILTRRFKEMAYLTHGIKIRFKDERDGSDTT-------FHFEGGLSQF 111

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++    N+  + ++I + +   +  H   +E A+A+ E    ++ S+ N I T +GGTHE
Sbjct: 112 IEDI--NKKNLITQILSFEAT-ENEHDSEIEIALAYNEGYDEKVLSFVNNIRTPDGGTHE 168

Query: 332 SGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G R  L+R I  Y E   N  ++ + ++ DD+    V I++  I EP+F GQTK KL S
Sbjct: 169 AGFRAGLSRAILNYIETNANAREKDVKVLGDDVREGLVAIIAAKIMEPQFEGQTKGKLGS 228

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448
              +  V+    +    +  +NP +A  +++ V+  +  R   ++ R+   +   +    
Sbjct: 229 SFVKGIVQKLTYEKMAKFFEENPSQAKLIMQKVLIAARGREAAKRARDLTRKDNKVSVST 288

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGK ADC        E+++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  +  + I 
Sbjct: 289 LPGKFADCQSKDPSECEIYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRLDTIL 348

Query: 509 NNQQIMDLVQALGCRTRSQY 528
            +++I +++ A GC    ++
Sbjct: 349 KSEEIKNMITAFGCGIGDEF 368


>gi|294963298|gb|ADF50136.1| DNA gyrase subunit B [Bacillus cereus]
          Length = 364

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 127/371 (34%), Positives = 199/371 (53%), Gaps = 14/371 (3%)

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS EL V V R+  I  QK+ RGIP++ L+       + GT   F+PDP+IF +   
Sbjct: 1   VNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-EQTGTITRFKPDPEIFQETIV 59

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           ++   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++ 
Sbjct: 60  YEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSKQ 113

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340
            I  E    +  K G     VE A+ + E       S+ N I T EGGTHE G + ALTR
Sbjct: 114 PIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTR 170

Query: 341 GIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E+
Sbjct: 171 VINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITES 230

Query: 399 ALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
              + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPGKLADCS
Sbjct: 231 VFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCS 290

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  ++
Sbjct: 291 SKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTII 350

Query: 518 QALGCRTRSQY 528
            A+G      +
Sbjct: 351 TAIGTNMEGDF 361


>gi|66474595|gb|AAY46867.1| GyrB [Aeromonas media]
          Length = 371

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 136/382 (35%), Positives = 208/382 (54%), Gaps = 16/382 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   +    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFTDTL-YHYEILAKRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH   
Sbjct: 112 YLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVS 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 169 FRTALTRTLNSYMDEEDYTKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 229 VKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 348

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 349 QEVGTLITALGCGIGRDEYNPD 370


>gi|146164124|gb|ABQ08729.1| DNA gyrase subunit beta [Aeromonas molluscorum]
 gi|146164128|gb|ABQ08730.1| DNA gyrase subunit beta [Aeromonas molluscorum]
 gi|146164130|gb|ABQ08731.1| DNA gyrase subunit beta [Aeromonas molluscorum]
 gi|146164132|gb|ABQ08732.1| DNA gyrase subunit beta [Aeromonas molluscorum]
 gi|146164137|gb|ABQ08733.1| DNA gyrase subunit beta [Aeromonas molluscorum]
          Length = 368

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 132/380 (34%), Positives = 209/380 (55%), Gaps = 17/380 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS++L +T+ R   ++ Q +  G P +PL++     N  GT + F P   
Sbjct: 1   HGVGVSVVNALSEKLLLTIRRNGHVYEQTYHMGEPQAPLKQIGD-SNGTGTEVRFWPSAT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   +    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFTDTL-YHYDILAKRLRELSFLNSGVSIRLEDERDGRE-------VHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQNKTPIHQKVFHFSTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
            R ALTR +  Y +    ++  +  +   DD+    + ++SV + +P+F+ QTK KLVS 
Sbjct: 169 FRTALTRTLNTYMDREDYSKKAKMSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSS 228

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRL 449
           + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK R    RK A+    L
Sbjct: 229 EVKTAVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAARKAREMTRRKGALDIAGL 288

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +++ +
Sbjct: 289 PGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVERARFDRMIS 348

Query: 510 NQQIMDLVQALGCRTRSQYR 529
           +Q++  L+ ALGC       
Sbjct: 349 SQEVGTLITALGCGIGRDEY 368


>gi|294963334|gb|ADF50154.1| DNA gyrase subunit B [Bacillus pumilus]
          Length = 355

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 128/363 (35%), Positives = 194/363 (53%), Gaps = 13/363 (3%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS  L VTV R   I  Q+F RG+P   LE   +  +  GT   F PDP+IF +   FD
Sbjct: 1   ALSTTLDVTVYRDGKIHYQQFKRGVPAGDLEIIGET-DVTGTTTHFVPDPEIFTETIEFD 59

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L    +  A+L+  V       +E  E+        + + GG+K+Y++    ++ ++
Sbjct: 60  YDTLANRVRELAFLTKGVNIIIEDLREGKERRNE-----YCYEGGIKSYVEHLNRSKEVV 114

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGI 342
             E    + EK G    T+E A+ + +       S+ N I T EGGTHE+G +  LTR I
Sbjct: 115 HEEPVYIEGEKDGI---TIEVALQYNDSYSSNIYSFANNINTYEGGTHEAGFKTGLTRVI 171

Query: 343 KKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             YA      +    ++  +D+      I+S+   +P+F GQTKTKL + +A+   ++  
Sbjct: 172 NDYARKNGVFKDGDSNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDSLF 231

Query: 401 RDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
            +  + +L++NP  A K++E  V+        ++ +    RK+A+    LPGKLADCS  
Sbjct: 232 SEALEKFLLENPDAAKKIVEKGVMAARARMAAKKARELTRRKSALEVSSLPGKLADCSSK 291

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
               +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  ++ A
Sbjct: 292 DPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITA 351

Query: 520 LGC 522
           LG 
Sbjct: 352 LGT 354


>gi|329112166|emb|CCA63118.1| DNA gyrase subunit B [Bacillus thuringiensis]
          Length = 354

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 131/365 (35%), Positives = 196/365 (53%), Gaps = 15/365 (4%)

Query: 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN 177
           V    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG SVVNALS EL V V R  
Sbjct: 1   VGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTELEVFVHRDG 59

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            I  QK+ RGIP++ L+      +K GT   F+PDP+IF +   ++   L    +  A+L
Sbjct: 60  KIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETTEYEFDTLATRMRELAFL 118

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +K      +E  +K      +EF++ GG+K+Y++    ++  I  E    +  K G 
Sbjct: 119 NRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 172

Query: 298 HRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI- 355
               VE A+ + E       S+ N I T EGGTHE G + ALTR I  Y       +   
Sbjct: 173 Q---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDAD 229

Query: 356 -SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
            ++  +D+      I+S+    P+F GQTKTKL + +A+   E+   + F+ +L++NP  
Sbjct: 230 SNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNV 289

Query: 415 ATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A K+++   +        ++ +    RK+A+    LPGKLADCS      +E++IVEGDS
Sbjct: 290 ARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDS 349

Query: 474 AGGSA 478
           AGGSA
Sbjct: 350 AGGSA 354


>gi|294963332|gb|ADF50153.1| DNA gyrase subunit B [Bacillus pumilus]
          Length = 354

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 128/363 (35%), Positives = 194/363 (53%), Gaps = 13/363 (3%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS  L VTV R   I  Q+F RG+P   LE   +  +  GT   F PDP+IF +   FD
Sbjct: 1   ALSTTLDVTVYRDGKIHYQQFKRGVPAGDLEIIGET-DVTGTTTHFVPDPEIFTETIEFD 59

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L    +  A+L+  V       +E  E+        + + GG+K+Y++    ++ ++
Sbjct: 60  YDTLANRVRELAFLTKGVNIIIEDLREGKERRNE-----YCYEGGIKSYVEHLNRSKEVV 114

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGI 342
             E    + EK G    T+E A+ + +       S+ N I T EGGTHE+G +  LTR I
Sbjct: 115 HEEPVYIEGEKDGI---TIEVALQYNDSYSSNIYSFANNINTYEGGTHEAGFKTGLTRVI 171

Query: 343 KKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             YA      +    ++  +D+      I+S+   +P+F GQTKTKL + +A+   ++  
Sbjct: 172 NDYARKNGVFKDGDSNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDSLF 231

Query: 401 RDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
            +  + +L++NP  A K++E  V+        ++ +    RK+A+    LPGKLADCS  
Sbjct: 232 SEALEKFLLENPDAAKKIVEKGVMAARARMAAKKARELTRRKSALEVSSLPGKLADCSSK 291

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
               +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  ++ A
Sbjct: 292 DPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITA 351

Query: 520 LGC 522
           LG 
Sbjct: 352 LGT 354


>gi|294963314|gb|ADF50144.1| DNA gyrase subunit B [Bacillus pumilus]
          Length = 355

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 129/363 (35%), Positives = 195/363 (53%), Gaps = 13/363 (3%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS  L VTV R   I  Q+F RG+P   LE   +  +  GT   F PDP+IF +   FD
Sbjct: 1   ALSTTLDVTVYRDGKIHYQQFKRGVPAGDLEIIGET-DVTGTTTHFVPDPEIFTETIEFD 59

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L    +  A+L+  V       +E  E+        + + GG+K+Y++    ++ ++
Sbjct: 60  YDTLANRVRELAFLTKGVNIIIEDLREGKERRNE-----YCYEGGIKSYVEHLNRSKEVV 114

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
             E    + EK G    T+E A+ + +     I S+ N I T EGGTHE+G +  LTR I
Sbjct: 115 HEEPVYIEGEKDGI---TIEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGLTRVI 171

Query: 343 KKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             YA      +    ++  +D+      I+S+   +P+F GQTKTKL + +A+   ++  
Sbjct: 172 NDYARKNGVFKDGDSNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDSLF 231

Query: 401 RDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
            +  + +L++NP  A K++E  V+        ++ +    RK+A+    LPGKLADCS  
Sbjct: 232 SEALEKFLLENPDAAKKIVEKGVMAARARMAAKKARELTRRKSALEVSSLPGKLADCSSK 291

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
               +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  ++ A
Sbjct: 292 DPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITA 351

Query: 520 LGC 522
           LG 
Sbjct: 352 LGT 354


>gi|533332|dbj|BAA04763.1| DNA gyrase subunit B [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
          Length = 391

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 119/402 (29%), Positives = 195/402 (48%), Gaps = 17/402 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           ++ Y+ SGGLHGVG SV NALS      + R   I   +F  G  L           K G
Sbjct: 1   STAYKSSGGLHGVGSSVTNALSKRFKAIIYRDKKIHEIEFKNGGKLEKPLTFINTTYKTG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I F PD  IF +   F+ + + +  +  A L+  +K   S               E+ 
Sbjct: 61  TTINFLPDDTIFSNA-KFNFSLISERLKESALLNSGLKITLSD-------LISNRYVEYQ 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILT 324
           F  GL  +++  +++++ ++  I      K       +++     ++N  I  + N + T
Sbjct: 113 FQDGLVEFVKELVDDKTPVTDIITINNESKNIIVEIALQYTE---DDNEIILGFANNVKT 169

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREP--EFAG 381
            +GGTH  G +  L R I  YA+  +  K    + S+DL    V I++V I E   E+ G
Sbjct: 170 IDGGTHLVGFKSGLIRAINDYAKDQKILKDKTKLDSNDLREGLVAIVTVKIPENLIEYEG 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK+KL + DA+  VE  + +   ++L++N + A K++E  +   + R+  ++ R+  + 
Sbjct: 230 QTKSKLGTSDAKTVVEQIVYEFMSYWLIENKVLANKVIENALNAQKARIAAKQARQAVKS 289

Query: 442 TAIRKLRLP---GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
              +K       GKL           EL++VEGDSAGGSAK  R+R+ QA+LPLRGK++N
Sbjct: 290 VKGKKNVNKLMLGKLTPAQGKKRELNELYLVEGDSAGGSAKSGRDRNFQAILPLRGKVIN 349

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
              A    +  N++I  ++ A+G      +   D+ Y K+II
Sbjct: 350 SEKAKLVDLLKNEEIQSIINAIGAGVGKDFDISDINYGKIII 391


>gi|146321368|ref|YP_001201079.1| DNA gyrase B subunit [Streptococcus suis 98HAH33]
 gi|145692174|gb|ABP92679.1| DNA gyrase B subunit [Streptococcus suis 98HAH33]
          Length = 126

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 53/102 (51%), Positives = 74/102 (72%), Gaps = 1/102 (0%)

Query: 38  QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97
           Q  +  YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I
Sbjct: 9   QEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFADKI 68

Query: 98  EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139
           EV ++ +  +TV+DNGRGIPV+   K   +  +E + T LHA
Sbjct: 69  EVYIEPDNSITVIDNGRGIPVDIQEK-TGRPAVETVFTVLHA 109


>gi|56675196|emb|CAI34900.1| DNA gyrase subunit B [Aeromonas schubertii]
          Length = 371

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 138/382 (36%), Positives = 209/382 (54%), Gaps = 16/382 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD L +T+ RQ  ++ Q +  G P +PL++        GT + F P P 
Sbjct: 1   HGVGVSVVNALSDTLKLTIRRQGHVYEQTYKLGEPQAPLKQIGDAT-TTGTEVRFWPSPT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L K  +  ++L+  V    + +++  E         F + GG+K +++
Sbjct: 60  IFSDTL-FHYEILAKRLRELSFLNSGVSILLTDERDGRE-------VHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              ++++ I  ++F    ++ G     VE A+ W +     +  + N I   +GGTH +G
Sbjct: 112 YLNQSKTPIHQKVFHFSADQDGI---GVEVAMQWNDGYQEGVYCFTNNIPQRDGGTHLAG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   S   DD+    V ++SV + +P+F+ QTK KLVS +
Sbjct: 169 FRAALTRTLNSYMDKEDYSKKAKTSASGDDVREGLVAVISVKVPDPKFSSQTKDKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLP 450
            +  VE A+ D    +L++NP +A  ++  +I+ +  R   RK R    RK A+    LP
Sbjct: 229 VKTAVEQAMADKLADFLLENPGDAKIVVNKIIDAARAREAARKAREMTRRKGALDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 348

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 349 QEVGTLITALGCGIGRDEYNPD 370


>gi|319958732|gb|ADV90536.1| DNA gyrase subunit B [Bacillus pumilus]
          Length = 363

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 127/372 (34%), Positives = 194/372 (52%), Gaps = 13/372 (3%)

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225
           S  L VTV R   I  Q+F RG+P   LE   +  +  GT   F PDP+IF +   FD  
Sbjct: 1   STTLDVTVYRDGKIHYQQFKRGVPAGDLEIIGET-DVTGTTTHFVPDPEIFTETIEFDYD 59

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
            L    +  A+L+  V       +E  E+        + + GG+K+Y++    ++ ++  
Sbjct: 60  TLANRVRELAFLTKGVNIIIEDLREGKERRNE-----YCYEGGIKSYVEHLNRSKEVVHE 114

Query: 286 EIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKK 344
           E    + EK G    T+E A+ + +       S+ N I T EGGTHE+G +  LTR I  
Sbjct: 115 EPVYIEGEKDGI---TIEVALQYNDSYSSNIYSFANNINTYEGGTHEAGFKTGLTRVIND 171

Query: 345 YAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRD 402
           YA      +    ++  +D+      I+S+   +P+F GQTKTKL + +A+   ++   +
Sbjct: 172 YARKNGVFKDGDSNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDSLFSE 231

Query: 403 PFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIA 461
             + +L++NP  A K++E  V+        ++ +    RK+A+    LPGKLADCS    
Sbjct: 232 ALEKFLLENPDAAKKIVEKGVMAARARMAAKKARELTRRKSALEVSSLPGKLADCSSKDP 291

Query: 462 HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
             +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  ++ ALG
Sbjct: 292 SISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALG 351

Query: 522 CRTRSQYREEDL 533
                 +  E  
Sbjct: 352 TGIGEDFTLEKA 363


>gi|319958722|gb|ADV90531.1| DNA gyrase subunit B [Bacillus amyloliquefaciens]
 gi|319958728|gb|ADV90534.1| DNA gyrase subunit B [Bacillus amyloliquefaciens]
 gi|319958750|gb|ADV90545.1| DNA gyrase subunit B [Bacillus amyloliquefaciens]
          Length = 366

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 135/375 (36%), Positives = 201/375 (53%), Gaps = 13/375 (3%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LS  L VTV R   I  Q + RG+P++ LE      +K GT   F PDP+IF +   +D 
Sbjct: 1   LSTTLDVTVHRDGKIHYQAYERGVPVADLEVIGDT-DKTGTITHFVPDPEIFKETIVYDY 59

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             L    +  A+L+  V       +E  E+        +++ GG+K+Y++    ++ ++ 
Sbjct: 60  DLLSNRVRELAFLTKGVNITIEDKREGQERKNE-----YHYEGGIKSYVEYLNRSKEVVH 114

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
            E    + EK G    TVE A+ + +     I S+ N I T EGGTHE+G +  LTR I 
Sbjct: 115 EEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVIN 171

Query: 344 KYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            YA       +   ++  DD+      I+S+   +P+F GQTKTKL + +A+   +    
Sbjct: 172 DYARRKGIFKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFS 231

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNI 460
              + +L++NP  A K++E  +  +  R+  +K RE   RK+A+    LPGKLADCS   
Sbjct: 232 SALETFLLENPDSARKIVEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKD 291

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  ++ AL
Sbjct: 292 PSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITAL 351

Query: 521 GCRTRSQYREEDLRY 535
           G      +  E  RY
Sbjct: 352 GTGIGEDFNLEKARY 366


>gi|23451174|gb|AAN32692.1| DNA gyrase subunit B [Aeromonas sp. 'CDC 2478-85']
          Length = 371

 Score =  191 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 136/382 (35%), Positives = 207/382 (54%), Gaps = 16/382 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++ V + +P+F+ QTK KLV  +
Sbjct: 169 FRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVIPVKVPDPKFSSQTKDKLVCSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 229 VKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 348

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 349 QEVGTLITALGCGIGRDEYNPD 370


>gi|207107914|dbj|BAG71969.1| DNA gyrase subunit B [Gordonia polyisoprenivorans]
          Length = 411

 Score =  191 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 129/416 (31%), Positives = 203/416 (48%), Gaps = 38/416 (9%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           GISVVNALS ++ V +      +S+ F+   P   ++   +   K GT + F PD  IF 
Sbjct: 1   GISVVNALSTKVEVEIDVDGFHWSETFTDSKPDGLVK--GEPTRKTGTTVRFWPDASIFT 58

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSC-----------------------------D 248
           +   F+A  + +  Q  A+L+  +    +                              D
Sbjct: 59  ETTSFNAETVARRLQEMAFLNKGLTITLTDRRPKAVEAPGDPNGEGEEGTTETAEEIKSD 118

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +E A     P+   +++P GL  Y++     ++ I   +     +  G     VE A+ W
Sbjct: 119 EEKAAAATKPKTRTYHYPDGLIDYIKHLNRTKNPIHKSVIGFTGKGTGH---EVEIAMQW 175

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
                  + ++ NTI T EGGTHE G R ALTR +  YA   +   ++  ++  DD+   
Sbjct: 176 NAGYSESVHTFANTINTHEGGTHEEGFRAALTRVVNSYAREKKLLKEKDDNLTGDDIREG 235

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              ++SV + +P+F GQTKTKL + + +  V  A  +  +H+   NP EA  ++   +E 
Sbjct: 236 LAAVISVKVSDPQFEGQTKTKLGNTEVKSFVLKASGEHIEHWFEANPAEAKIIINKAVES 295

Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           +  R   RK RE V RK+A     LPGKLADC  N     E+++VEGDSAGGSAK  R+ 
Sbjct: 296 AHARQAARKARELVRRKSATDIGGLPGKLADCRSNDPSKCEIYLVEGDSAGGSAKTGRDS 355

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 356 MYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDLAKLRYHKIVL 411


>gi|319958740|gb|ADV90540.1| DNA gyrase subunit B [Bacillus pumilus]
          Length = 363

 Score =  191 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 128/372 (34%), Positives = 195/372 (52%), Gaps = 13/372 (3%)

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225
           S  L VTV R   I  Q+F RG+P   LE   +  +  GT   F PDP+IF +   FD  
Sbjct: 1   STTLDVTVYRDGKIHYQQFKRGVPAGDLEIIGET-DVTGTTTHFVPDPEIFTETIEFDYD 59

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
            L    +  A+L+  V       +E  E+        + + GG+K+Y++    ++ ++  
Sbjct: 60  TLANRVRELAFLTKGVNIIIEDLREGKERRNE-----YCYEGGIKSYVEHLNRSKEVVHE 114

Query: 286 EIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKK 344
           E    + EK G    T+E A+ + +     I S+ N I T EGGTHE+G +  LTR I  
Sbjct: 115 EPVYIEGEKDGI---TIEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGLTRVIND 171

Query: 345 YAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRD 402
           YA      +    ++  +D+      I+S+   +P+F GQTKTKL + +A+   ++   +
Sbjct: 172 YARKNGVFKDGDSNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDSLFSE 231

Query: 403 PFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIA 461
             + +L++NP  A K++E  V+        ++ +    RK+A+    LPGKLADCS    
Sbjct: 232 ALEKFLLENPDAAKKIVEKGVMAARARMAAKKARELTRRKSALEVSSLPGKLADCSSKDP 291

Query: 462 HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
             +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  ++ ALG
Sbjct: 292 SISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALG 351

Query: 522 CRTRSQYREEDL 533
                 +  E  
Sbjct: 352 TGIGEDFTLEKA 363


>gi|197295800|gb|ACH58603.1| topoisomerase [Methylobacterium aminovorans]
          Length = 385

 Score =  191 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 221/387 (57%), Positives = 275/387 (71%), Gaps = 5/387 (1%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVGISVVNALSD L V VAR  T++ Q FSRG     LE   +V+N+RGTR+ F 
Sbjct: 1   SGGLHGVGISVVNALSDVLEVEVARNQTLYRQTFSRGHAQGSLETVGRVQNRRGTRVRFH 60

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-YGIPEKEEFYFPGGL 269
           PD +IFG    FD  RL KM +SKAYL G V+  W C   + E    +P +    FPGGL
Sbjct: 61  PDAQIFGSL-KFDPRRLFKMARSKAYLFGGVEIRWRCAPALLEGLDDVPAEAVHRFPGGL 119

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGG 328
             YL   +E + L+   IF+GK  K G+H G++EWA+AW   ++    SYCNTI T EGG
Sbjct: 120 SDYLARDIEGKELVLDSIFSGKITKPGSH-GSLEWAVAWTVADDGVSHSYCNTIPTPEGG 178

Query: 329 THESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           THESGLRVAL R ++++AE     KR  ++ +DD+M +   +LSVFIREPEF GQTK KL
Sbjct: 179 THESGLRVALLRALREHAERVNQAKRMTAVTTDDVMATCASMLSVFIREPEFQGQTKDKL 238

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL 447
            +++A R VE A+RD FDH+L  +P +A KLL+WVI+R+EERLRRR+++EV RK+A RKL
Sbjct: 239 ATVEASRIVETAVRDAFDHWLAASPAQANKLLDWVIDRAEERLRRRQEKEVARKSATRKL 298

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
           RLPGKLADCS     G+E+FIVEGDSAGGSAKQAR+R+ QAVLPLRGKILNVASA  +K+
Sbjct: 299 RLPGKLADCSAAGTAGSEIFIVEGDSAGGSAKQARDRATQAVLPLRGKILNVASASRDKL 358

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLR 534
             NQ I DL  ALGC T + +RE DLR
Sbjct: 359 GANQLISDLTLALGCGTGANFREGDLR 385


>gi|23451185|gb|AAN32697.1| DNA gyrase subunit B [Aeromonas encheleia]
          Length = 372

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 134/382 (35%), Positives = 203/382 (53%), Gaps = 15/382 (3%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++     +  GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPT 60

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   +    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 61  IFTDTL-YHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVE 112

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 113 YLNQNKTPIHPKVFHFSTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 169

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   D +    + ++SV + +P+F+ QTK KL S  
Sbjct: 170 FRTALTRTLNTYMDKEDYSKKAKSAASGDXVREGLIAVISVKVPDPKFSSQTKDKLGSSK 229

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  V+ A         V+NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 230 VKTXVKPAXGXKLXEVXVENPGDAKIVVTKIIDAARAREAARKARELTRRKGALDIAGLP 289

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 290 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 349

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 350 QEVGTLITALGCGIGRDEYNPD 371


>gi|308152569|dbj|BAJ22263.1| DNA gyrase subunit B [Mycobacterium sp.]
          Length = 419

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 125/424 (29%), Positives = 205/424 (48%), Gaps = 35/424 (8%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y++SGGLHGVG+SVVNALS  L   + +    + Q + + +P +  + ++        
Sbjct: 2   GAYQVSGGLHGVGVSVVNALSTRLEADIRKDGYEWFQVYDKSVPGTLKQGEKTTETGTTI 61

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------- 258
           R    PD     +   +D   + +  Q  A+L+  +    + ++  AE+           
Sbjct: 62  RFWADPD---IFETTVYDFETIARRLQEMAFLNKGLTIELTDERVTAEEVVDDVVSDHAE 118

Query: 259 ------------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                             +   F++PGGL  +++     +S I   +     + +G    
Sbjct: 119 APKSAAEEAAEAAAPVKVKHRVFHYPGGLVDFVKHINRTKSPIQPSVIDFDGKGEGH--- 175

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISI 357
            VE A+ W       + ++ NTI T EGGTHE G R ALT  + KY   +     +  ++
Sbjct: 176 EVEIAMQWNGGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKEKKLLKDKDPNL 235

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             +D+      ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP EA  
Sbjct: 236 TGEDIREGLAAVISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEQISHWFEANPAEAKT 295

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++   +  ++ R   RK R  V RK+A     LPGKLADC       +EL++VEGDSAGG
Sbjct: 296 VVNKAVSSAQAREAARKARALVRRKSATEIGGLPGKLADCRSTDPSKSELYVVEGDSAGG 355

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY 
Sbjct: 356 SAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDISKLRYH 415

Query: 537 KVII 540
           K+++
Sbjct: 416 KIVL 419


>gi|326536845|ref|YP_004300843.1| DNA topoisomerase II large subunit [Aeromonas phage 65]
 gi|312596865|gb|AAR90934.2| DNA topoisomerase II large subunit [Aeromonas phage 65]
          Length = 667

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 118/682 (17%), Positives = 208/682 (30%), Gaps = 76/682 (11%)

Query: 50  RILEGLEPVRMRPGMYIGGTDE-----------------KALHHLFSEVIDNAMDEVIA- 91
           +IL   E + +   MY+G   E                   L  +  E++DN++DE I  
Sbjct: 7   KILSHYEHIFLNSDMYVGSLSEETHLVLENGKFVSKNYIPGLAKVIDEIVDNSVDEAIRT 66

Query: 92  --GYANLIEVSLDG-NGFLTVVDNGRGIPV--ENHPKFPNKSTLEIILTTLHAGGKFDNS 146
              YAN I++ +D     +T+ DNGRGIP      P+           T   AGG F   
Sbjct: 67  DFKYANKIDIVVDDQTNQVTISDNGRGIPQYDVTTPEGEVVPYPLACYTRAMAGGNFVKE 126

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
              I  G +GVG  + N  S     T        +   ++        K  K    +GT 
Sbjct: 127 RKGI--GKNGVGSVLTNLYSTMFRATTCDGKNTVTIYCTQNAENQSYTK--KKGGTQGTT 182

Query: 207 ITFRPD----PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK----------EIA 252
           + F PD      IFG         +    +  + L  ++K  ++  K          +  
Sbjct: 183 VEFIPDLLDKFGIFGGIPNDIVDVIKSRVEILSVLFPQIKFTFNKKKVDSKFKKFASDFG 242

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
           +      ++  +F G    + Q    N           +    G             +  
Sbjct: 243 DPVIFENEKCSFFIGTSDEFRQLSYVNGVHTKQGGNHVEYLINGLCDELTPMIKRKFKVE 302

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSV 372
              +      L         G +       +      Q K    I    +    +   SV
Sbjct: 303 INKSRIKENTLIFMSLRGFEGAKFDGQTKERLSNSNGQIKDHCGIDLKAIAKRMISNDSV 362

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL-----LEWVIERSE 427
            +   E A   +  +    A +  + AL      ++  N            L        
Sbjct: 363 IMPIVESAIAKRDAVEKALATKAQKKALTSNVPKHIQANKYGKKGFETVLFLTEGDSALG 422

Query: 428 ERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
                R            K+    K++D ++ + +     I+   S  G           
Sbjct: 423 FLGATRDHDTQGGFPLRGKMLSVHKISDKTKVLKNAEITNII---SILGITLDDTKELPS 479

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED------------LRY 535
                 G ++   +          Q  D++         +                   Y
Sbjct: 480 GDFYRNGDLVVAENDEMIVNGKWVQTRDIITGNEWTHELKPDMVHYRNQTNVRRNTAANY 539

Query: 536 EKVIIMTDADVDG-AHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDE 594
           + V I+ DAD DG  HI++L+++ F++     I+Q  L +   P +   +G   V+ +D 
Sbjct: 540 DYVSILVDADPDGRGHISNLIISLFHKYWKHYIDQGRLLVCRTPEYISRKGKDVVWCYDT 599

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
                     KK      +    KGLG++     K+   D     + RV I+        
Sbjct: 600 VEFNN-----KKFAGTGWKHEHVKGLGQLNKEDYKKCIRDP---YMERVSIDG------S 645

Query: 655 TQDSINKLMGTKADERFKFIQE 676
             +S+    G ++D R  ++ E
Sbjct: 646 AGESLEMFFGNESDLRKAWMDE 667


>gi|29652970|gb|AAO87454.1| DNA gyrase B [Listeria monocytogenes]
          Length = 187

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 79/186 (42%), Positives = 111/186 (59%), Gaps = 2/186 (1%)

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +R +    + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+L
Sbjct: 4   AKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAIL 63

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           P+RGKILNV  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAH
Sbjct: 64  PIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAH 123

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           I +LLLT FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  
Sbjct: 124 IRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDT 181

Query: 611 KIEISR 616
           K  I R
Sbjct: 182 KYSIQR 187


>gi|93277208|gb|ABF06422.1| gyrase B [Streptomyces sp. MC3]
          Length = 378

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 194/378 (51%), Gaps = 17/378 (4%)

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
            VVN LS ++ V V      ++  +  G+P +PL K  +V  + GT +TF  DP+I    
Sbjct: 1   CVVNGLSSKVAVEVRTDGHRWTPDYKMGVPTAPLVKH-EVTEETGTSVTFWADPEILETT 59

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA-----------EKYGIPEKEEFYFPGG 268
             +    L +  Q  A+L+  +    + ++E A           ++    +   +++ GG
Sbjct: 60  -EYSFETLSRRFQEMAFLNKGLTIRLTDERESAKATSGADEAGADEKAEVKTVTYHYEGG 118

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           +  +++     +             +      ++E A+ W       + S+ N I T EG
Sbjct: 119 IVDFVKYLNSRKGEAVHPTVVSLEAEDKDKSLSLEVAMQWNSGYTEGVYSFANIIHTHEG 178

Query: 328 GTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTHE G R ALT  I KYA   +   ++  ++  DD+      I+SV + EP+F GQTKT
Sbjct: 179 GTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISVKLSEPQFEGQTKT 238

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI- 444
           KL + +A+  V+ A+ +  + +L +NP+EA  ++   I+ +  R+  RK R++ R+  + 
Sbjct: 239 KLGNTEAKTFVQKAVYEHLNDWLDRNPVEAADIIRKGIQAATARVAARKARDLTRRKGLL 298

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV  A  
Sbjct: 299 ESASLPGKLADCQSNDPAKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEKARI 358

Query: 505 EKIRNNQQIMDLVQALGC 522
           +KI  NQ+I  L+ A G 
Sbjct: 359 DKILQNQEIQALISAFGT 376


>gi|209863359|gb|ACI88779.1| DNA gyrase subunit B [Aeromonas sp. JH93]
          Length = 366

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 134/377 (35%), Positives = 207/377 (54%), Gaps = 15/377 (3%)

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++     +  GT + F P P IF
Sbjct: 1   VGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIF 60

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            D   +    L K  +  ++L+  V      +++  E         F + GG+K +++  
Sbjct: 61  TDTL-YHYEILAKRLRELSFLNSGVSIRLEDERDGRE-------MHFCYEGGIKAFVEYL 112

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G R
Sbjct: 113 NQNKTPIHPKVFHFSTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFR 169

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS + +
Sbjct: 170 TALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVK 229

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
             VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGK
Sbjct: 230 TAVEQAMGEKLGEFLLENPSDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGK 289

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q+
Sbjct: 290 LADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQE 349

Query: 513 IMDLVQALGCRTRSQYR 529
           +  L+ ALGC       
Sbjct: 350 VGTLITALGCGIGRDEY 366


>gi|119369984|gb|ABL68006.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 419

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 126/440 (28%), Positives = 193/440 (43%), Gaps = 36/440 (8%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKF+NS Y++SGGLHGVG+SVVNALS  L + + ++  +  Q + +G+P 
Sbjct: 1   EVIMTVLHAGGKFNNSLYKVSGGLHGVGVSVVNALSRRLELEIYQEGRLHRQVYHQGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL         RGT I F PD  I      F    L    +  A+L+  +      ++ 
Sbjct: 61  APLSVVG-TTALRGTSIRFWPDLSIMET-DTFLFDTLAHRFRELAFLNPILTIVLREEES 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                  P +E F+F GG+K+Y +   EN+  I  E+   + E            ++   
Sbjct: 119 -------PREETFHFEGGIKSYNEFLNENKKTI-PEVLFFRREPSLRSPVRGCLPVSGDN 170

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
                  +C       G     G+  +  +G + + +     +   +  +D+   A    
Sbjct: 171 GQRNDPRFCEQYFYQGGWHPYQGIPDSPAKGHQPFYQGQAANKGEELRGEDIRERAYRRC 230

Query: 371 SVFIREPEFAGQTKTK------------LVSLDAQRTVENALRDPFDHYLVQNPI-EATK 417
                    +G  + +            L       TV     D        NP      
Sbjct: 231 QCPYSRSAVSGADQGQAGVLLGVRSHGNLFGRGDAGTVSGISPDCQKDRCQGNPDGHGQG 290

Query: 418 LLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
             E      ++  R R+ +       +   R                 L  VEGDSAGGS
Sbjct: 291 SGEKGQRACKKEKRSRRIQPSGETCGLSGKRSCE-----------MRALHCVEGDSAGGS 339

Query: 478 AKQARNRSNQAVLPLRGKILNVASA-GSEKIRNNQQIMDLVQALGCRTRSQYREED-LRY 535
           AKQ R+R  QA+LPL+GKILNV  A G+E+   + ++  L+ A+GC   ++   +  LRY
Sbjct: 340 AKQGRDRKFQAILPLKGKILNVEKAGGAERFVTHDEVRALITAVGCGLGNEEYSQKNLRY 399

Query: 536 EKVIIMTDADVDGAHIASLL 555
            K+II+TDADVDG+HI +LL
Sbjct: 400 HKIIIITDADVDGSHIRTLL 419


>gi|307343840|emb|CBJ19525.1| gyrase B subunit [Micromonospora sp. CR38]
          Length = 370

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 117/376 (31%), Positives = 196/376 (52%), Gaps = 9/376 (2%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS ++ V + +   ++ Q ++   P S  +   +  ++ G+ ++F PDP 
Sbjct: 1   HGVGVSVVNALSTKMFVEIHKSGAVWRQHYTHSKPGSLEK--GEATDRTGSAVSFWPDPD 58

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           +F     FD   + +  Q  A+L+  ++     ++   E+ G   +  FY+ GG+  +++
Sbjct: 59  VFETV-DFDFQTIYRRLQEMAFLNRALRIHLLDERVAEEEDGRQREVTFYYEGGIADFVR 117

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               ++S I   +     E++G    ++E A+ W E     + ++ NTI T EGGTHE G
Sbjct: 118 HLNASKSPIHKTVVEFIAEEEG---MSLEIAMQWNESYGESVYTFANTINTHEGGTHEEG 174

Query: 334 LRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
            R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQTKTKL +   
Sbjct: 175 FRSALTSVVNRYGTDKKLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPV 234

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           +  V+    D    +  +NP EA  ++ +           ++ ++   RK+ +    +PG
Sbjct: 235 KSFVQRVCNDRLVDWFDRNPAEAKMIITKASQAARARIAAQQARKLARRKSLLESGSMPG 294

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N 
Sbjct: 295 KLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNN 354

Query: 512 QIMDLVQALGCRTRSQ 527
           ++  L+ ALG      
Sbjct: 355 EVQALITALGTGIHDD 370


>gi|189182406|gb|ACD81922.1| DNA gyrase subunit beta [Shewanella vesiculosa]
          Length = 365

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 131/374 (35%), Positives = 204/374 (54%), Gaps = 15/374 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS++L +T+ R   ++ Q ++ G+P +P+++        GT + F P  +
Sbjct: 1   HGVGVSVVNALSEKLQLTIRRAGKVYEQFYTHGVPDAPIKEIGDAVK-TGTELRFWPSSQ 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
            F D   F    L K  +  ++L+  V      +++  +       E F + GG+  ++ 
Sbjct: 60  TFTDV-EFHFEILAKRVRELSFLNSGVGIRLVDERDNKD-------EFFKYEGGISAFVD 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               N++ I+ ++F    E+      TVE A+ W +     I  + N I   +GGTH  G
Sbjct: 112 YLNRNKTPINKDVFHFSQERDD--GITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLVG 169

Query: 334 LRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y E      K   S   DD       ++SV + +P+F+ QTK KLVS +
Sbjct: 170 FRGALTRNLNNYMEREGFNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSE 229

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLP 450
            +  VE  + +  + YL++NP +A  ++  +++ +  R   RK R    RK A+    LP
Sbjct: 230 VKSAVEQTMGEQLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLP 289

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 290 GKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 349

Query: 511 QQIMDLVQALGCRT 524
           Q++  L+ ALGC  
Sbjct: 350 QEVATLITALGCGI 363


>gi|23451183|gb|AAN32696.1| DNA gyrase subunit B [Aeromonas allosaccharophila]
          Length = 371

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 132/382 (34%), Positives = 204/382 (53%), Gaps = 16/382 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   +    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFTDTL-YHYEILAKRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R  LTR +  Y +      K   +    D+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 169 FRTGLTRTLNSYMDKEDYSKKAKSAASGXDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 229 VKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSA GSAK   NR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 GKLADCQEKDPALSELYIVEGDSAXGSAKXXXNRKNQAILPLKGKILNVEKARXDKMISS 348

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 349 QEVGTLITALGCGIGRDEYNPD 370


>gi|6644324|gb|AAF21009.1|AF208258_1 DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 386

 Score =  191 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 140/386 (36%), Positives = 213/386 (55%), Gaps = 16/386 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P P IF D   F    L K  +  ++L+  V      +++  E         F + GG+K
Sbjct: 60  PSPAIFSDTL-FHYEILAKRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIK 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I  ++F   TE+ G     V+ A+ W +     +    N IL  +GGT
Sbjct: 112 AFVEYLNQNKTPIHPKVFHFTTEQDGI---GVKLAMQWNDAYQEGVYCLTNNILHRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           +  G R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KL
Sbjct: 169 YLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
           VS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+  
Sbjct: 229 VSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDI 288

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 289 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 348

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED 532
           + +++++  L+ ALGC         D
Sbjct: 349 MISSREVGTLITALGCGIGRDEYNPD 374


>gi|294963300|gb|ADF50137.1| DNA gyrase subunit B [Bacillus licheniformis]
          Length = 362

 Score =  191 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 128/369 (34%), Positives = 196/369 (53%), Gaps = 13/369 (3%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LS EL VTV R   +  Q+F RG+P + L+         GT   F+PDP+IF +   +D 
Sbjct: 1   LSTELDVTVYRDGKVHYQEFERGVPKADLKVIGDT-EVTGTTTHFKPDPEIFTETTEYDY 59

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             L    +  A+L+  VK      +E  E+       ++ + GG+K+Y++    +R ++ 
Sbjct: 60  DTLATRVRELAFLTKGVKITIEDKREGKERKN-----DYCYEGGIKSYVEHLNRSREVVH 114

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
            E    +  K G    TVE A+ + +     I S+ N I T EGGTHE+G +  LTR I 
Sbjct: 115 EEPVYIEGSKDGI---TVEVALQYNDSYTSNIYSFANNIHTYEGGTHEAGFKTGLTRVIN 171

Query: 344 KYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            YA       +   ++  +D+      I+S+   +P+F GQTKTKL + +A+   +    
Sbjct: 172 DYARRNGVFKESDPNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDALFS 231

Query: 402 DPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
           +  + +L++NP  A K++E  V+        ++ +    RK+A+    LPGKLADCS   
Sbjct: 232 EALEKFLLENPDSAKKIVEKGVMAARARMAAKKARELTRRKSALEVSNLPGKLADCSSKD 291

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  ++ AL
Sbjct: 292 PTISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITAL 351

Query: 521 GCRTRSQYR 529
           G      + 
Sbjct: 352 GTGIGEDFN 360


>gi|207678290|gb|ACI25157.1| DNA gyrase B [Phaeobacter sp. M21-2.1]
          Length = 368

 Score =  191 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 124/373 (33%), Positives = 193/373 (51%), Gaps = 13/373 (3%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD L + + R       +F RG     L+      ++ GT + F    + 
Sbjct: 1   GVGVSVVNALSDWLELRIWRDGKEHVARFERGDTAEHLKVVGDCGDQTGTEVRFLASTET 60

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   +    L K  +  A+L+  V+     ++          + E ++ GG+K +++ 
Sbjct: 61  FSNL-EYLFETLEKRLRELAFLNSGVRIILIDER-----PAERLEVELFYEGGVKEFVKY 114

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              ++S +         ++       VE A+ W +     +  + N I   +GGTH +G 
Sbjct: 115 LDRSKSPVMEAPIYITGDRDEI---GVEVAMWWNDSYHETVLPFTNNIPQRDGGTHVAGF 171

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR I  YA+ +    K  +S   DD       +LSV + +P+F+ QTK KLVS + 
Sbjct: 172 RGALTRTINNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEV 231

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
           +  VE+ + +    +  +NP +A +++  +IE +  R   RK RE   RKTA+    L G
Sbjct: 232 RPVVESLVNEKLAEWFEENPNQAKQIVGKIIEAALAREAARKARELTRRKTAMDVNYLAG 291

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL DCS+     TE+F+VEGDSAGGSA+  R+R  QA+LPLRGKILNV  A  +++  +Q
Sbjct: 292 KLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRMTQAILPLRGKILNVERARFDRMLGSQ 351

Query: 512 QIMDLVQALGCRT 524
           +I +LV ALG   
Sbjct: 352 EIGNLVMALGTGI 364


>gi|189164048|gb|ACD77134.1| FusA [Geobacter sp. M21]
          Length = 263

 Score =  191 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 119/263 (45%), Positives = 163/263 (61%), Gaps = 4/263 (1%)

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREP 377
           N I T EGGTH  G + AL R +  YA      + +   I  +DL      ++SV I +P
Sbjct: 1   NNINTHEGGTHLIGFKAALMRTMNTYANTNNLLKNVKVAISGEDLREGLTAVISVKISQP 60

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F GQTKTKL + + +  VE  + +    YL +NP  A K+LE  I+ +  R   RK RE
Sbjct: 61  QFEGQTKTKLGNSEVKGYVETLMNEKLATYLEENPAMARKILEKSIDAARAREAARKARE 120

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              RK A+    LPGKLADC +      ELF+VEGDSAGGSAKQ R+R  QA+LPL+GKI
Sbjct: 121 LTRRKGALEVGTLPGKLADCQEKDPALCELFLVEGDSAGGSAKQGRDRKYQAILPLKGKI 180

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLL 555
           LNV  A  +K+  +Q+I  L+ ALG    +  +    LRY ++I+MTDADVDG+HI +LL
Sbjct: 181 LNVEKARFDKMLASQEIRTLISALGTSIGKEDFDIAKLRYHRIIVMTDADVDGSHILTLL 240

Query: 556 LTFFYQEMYDLIEQKHLFLISPP 578
           LTFF+++M +LIE+ +L++  PP
Sbjct: 241 LTFFFRQMLELIERGYLYIAQPP 263


>gi|56675194|emb|CAI34899.1| DNA gyrase subunit B [Aeromonas sp. LMG 17321]
          Length = 371

 Score =  191 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 138/382 (36%), Positives = 209/382 (54%), Gaps = 16/382 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD L +T+ RQ  ++ Q +  G P +PL++        GT + F P P 
Sbjct: 1   HGVGVSVVNALSDTLKLTIRRQGHVYEQTYKLGEPQAPLKQIGDAT-TTGTEVRFWPSPT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L K  +  ++L+  V    + +++  E         F + GG+K +++
Sbjct: 60  IFSDTL-FHYEILAKRLRELSFLNSGVSILLADERDGRE-------VHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              ++++ I  ++F    ++ G     VE A+ W +     +  + N I   +GGTH +G
Sbjct: 112 YLNQSKTPIHQKVFHFSADQDGI---GVEVAMQWNDGYQEGVYCFTNNIPQRDGGTHLAG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   S   DD+    V ++SV + +P+F+ QTK KLVS +
Sbjct: 169 FRAALTRTLNSYMDKEDYSKKAKTSASGDDVREGLVAVISVKVPDPKFSSQTKDKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLP 450
            +  VE A+ D    +L++NP +A  ++  +I+ +  R   RK R    RK A+    LP
Sbjct: 229 VKTAVEQAMADKLADFLLENPGDAKIVVNKIIDAARAREAARKAREMTRRKGALDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 348

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 349 QEVGTLITALGCGIGRDEYNPD 370


>gi|66474557|gb|AAY46848.1| GyrB [Aeromonas hydrophila]
          Length = 371

 Score =  191 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 137/382 (35%), Positives = 209/382 (54%), Gaps = 16/382 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGV +SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P 
Sbjct: 1   HGVCVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFSDTL-FHYEILAKRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 169 FRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 229 VKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 348

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC       + D
Sbjct: 349 QEVGTLITALGCGIGRDEYKPD 370


>gi|71833825|emb|CAI94344.1| gyrase B [Helicobacter sp. 'Flexispira str. FL56']
          Length = 368

 Score =  191 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 127/380 (33%), Positives = 213/380 (56%), Gaps = 16/380 (4%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS +L +T+ + N I+ Q+F +GIP++ LE   + +   GT I F PD
Sbjct: 1   GLHGVGVSVVNALSCKLIMTIYKDNKIYKQEFEKGIPVTELEIVGETKKH-GTTIEFFPD 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P+I      FD+  L +  +  AYL+  +K  +  +++ ++         F+F GGL  +
Sbjct: 60  PEIME-ITEFDSNILTRRFKEMAYLTHGIKIRFKDERDGSDTT-------FHFEGGLSQF 111

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++    N+  + ++I + +   +  +   +E A+A+ E    ++ S+ N I T +GGTHE
Sbjct: 112 IEDI--NKKTLITQILSFEAT-ENEYDSEIEIALAYNEGYDEKVLSFVNNIRTPDGGTHE 168

Query: 332 SGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G R  L+R I  Y E   N  ++ + ++ DD+    V I++  I +P+F GQTK KL S
Sbjct: 169 AGFRAGLSRAILNYIEANANTREKDVKVLGDDVREGLVAIVATKIMDPQFEGQTKGKLGS 228

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448
              +  V+    +    +  +NP +A  +++ V+  +  R   ++ R+   +   +    
Sbjct: 229 SFVKGIVQKLTYEKMAKFFEENPNQAKLIMQKVLIAARGREAAKRARDLTRKDNKVSVST 288

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGK ADC        E+++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  +  + I 
Sbjct: 289 LPGKFADCQSKDPSECEIYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRLDTIL 348

Query: 509 NNQQIMDLVQALGCRTRSQY 528
            +++I +++ A GC    ++
Sbjct: 349 KSEEIKNMITAFGCGIGDEF 368


>gi|163256330|dbj|BAF95675.1| DNA gyrase subunit B [Bradyrhizobium sp. KO23]
          Length = 272

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 71/169 (42%), Positives = 106/169 (62%), Gaps = 2/169 (1%)

Query: 79  SEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLH 138
            EV+DNA+DE +AG+A+ + V+L+ +  +TV D+GRGIPV+ H K    S  E+I+T LH
Sbjct: 1   YEVVDNAIDEALAGHASRVLVTLNADNSVTVYDDGRGIPVDIH-KGEGVSAAEVIMTQLH 59

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD ++Y++SGGLHGVG+SVVNALS +L + +   +     +F+ G  ++PL+    
Sbjct: 60  AGGKFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWGDDKEHYIEFAHGDAVAPLKVVGD 119

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247
              KRGT +TF   P+ F +   +D A L    +  A+L+  V    S 
Sbjct: 120 APGKRGTEVTFLASPETFKN-IEYDFATLEHRLRELAFLNSGVHIVLSD 167


>gi|307592556|gb|ADN65366.1| DNA gyrase subunit B [Chryseobacterium shigense]
          Length = 237

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 94/238 (39%), Positives = 152/238 (63%), Gaps = 7/238 (2%)

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA- 443
           TK  + +    V   + +   ++L +NP EA  +++ V+  ++ R   +K RE+ ++ + 
Sbjct: 1   TKNRNSEVSGAVVKIVGEMLSNFLEENPNEAKIIVQKVVLAAKARQAAKKAREMVQRKSP 60

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKL+DCS      +ELF+VEGDSAGG+AKQ R+R  QA+LPLRGKILNV  + 
Sbjct: 61  MGGSGLPGKLSDCSSKDPAESELFLVEGDSAGGTAKQGRDRHFQAILPLRGKILNVEKSM 120

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTF 558
             K+ +N++I ++  ALG    ++          LRY KV+IMTDAD+DG+HI++L+LTF
Sbjct: 121 LHKVYDNEEIKNIYTALGVSVGTEEDSKALNMAKLRYHKVVIMTDADIDGSHISTLILTF 180

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616
           F++ M +LIE  ++++  PPL+ + +G K VYA++E+ +++   E    GKG +E+ R
Sbjct: 181 FFRFMKELIENGYIYIAQPPLYLLKKGNKKVYAYNEKEREEFTLEMAPDGKG-VEVQR 237


>gi|294963338|gb|ADF50156.1| DNA gyrase subunit B [Bacillus cereus]
          Length = 355

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 126/365 (34%), Positives = 197/365 (53%), Gaps = 14/365 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS EL V V R+  I  QK+ RGIP++ L+       + GT   F+PDP+IF +   +
Sbjct: 1   NALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-EQTGTITRFKPDPEIFQETIVY 59

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++  
Sbjct: 60  EFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSKQP 113

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           I  E    +  K G     VE A+ + E       S+ N I T EGGTHE G + ALTR 
Sbjct: 114 IHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRV 170

Query: 342 IKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E+ 
Sbjct: 171 INDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESV 230

Query: 400 LRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
             + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPGKLADCS 
Sbjct: 231 FSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSS 290

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  ++ 
Sbjct: 291 KDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIIT 350

Query: 519 ALGCR 523
           A+G  
Sbjct: 351 AIGTN 355


>gi|19909569|dbj|BAB86980.1| DNA gyrase subunit B [Brevundimonas bacteroides]
          Length = 400

 Score =  190 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 139/409 (33%), Positives = 214/409 (52%), Gaps = 24/409 (5%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR--- 203
           +Y++SGGLHGVG+SVVNALSD L + + R       +F RG  +  L        +    
Sbjct: 1   SYKVSGGLHGVGVSVVNALSDWLKLVIFRNGKRHEMRFERGDTVESLRVTGDAPIRTDGA 60

Query: 204 -------GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
                  GT++TF P    F     FD   L    +  A+L+  V    +  +     + 
Sbjct: 61  KAGQTLSGTQVTFYPSVTTFS-HIDFDLKTLEHRLRELAFLNSGVVIKLADHR-----HA 114

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
            P +E  ++ GG++ +++   +++S I  ++   + +K+G     ++ A+ W +     +
Sbjct: 115 EPFEEILHYEGGVEAFVRHLDKSKSPILKDVIVIRGKKEGV---ELDLALWWNDSYHETM 171

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH S  R +LTR +  Y E +    K  ++   +D       +LSV 
Sbjct: 172 LCFTNNIPQRDGGTHLSAFRASLTRVMGAYMESSGALKKEKVAPTGEDAREGLTCVLSVK 231

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + +P+F+ QTK KLVS + +  VE    +    +  ++P+EA  +   +IE +  R   R
Sbjct: 232 VPDPKFSSQTKDKLVSSEVRPAVEALCSEGLSTWFEEHPVEAKLITAKIIEAASAREAAR 291

Query: 434 KQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           K R+   RK+A+    LPGKLADC +     +ELFIVEGDSAGGSAKQARNR NQAVLPL
Sbjct: 292 KARDLTRRKSAMDISSLPGKLADCQERDPAKSELFIVEGDSAGGSAKQARNRENQAVLPL 351

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVII 540
           RGKILNV  A  +++ ++  I  L+ ALG          + LRY K+I+
Sbjct: 352 RGKILNVERARFDRMLSSDLIGTLILALGTGIGRDDFNADKLRYHKIIL 400


>gi|19909547|dbj|BAB86969.1| DNA gyrase subunit B [Mycoplana bullata]
          Length = 398

 Score =  190 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 135/407 (33%), Positives = 208/407 (51%), Gaps = 24/407 (5%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR--- 203
           +Y++SGGLHGVG+SVVNALSD L + + R       +F RG  +  L        +    
Sbjct: 1   SYKVSGGLHGVGVSVVNALSDWLELKIYRDGKAHQMRFERGDTVKSLVITGDAPIRTEGE 60

Query: 204 -------GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
                  GT +TF P    F     FD   L    +  A+L+  V    +  +       
Sbjct: 61  KAGQPLSGTEVTFYPSVTTFS-HIDFDLKTLEHRLRELAFLNSGVVIKLADHR-----GA 114

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
            P +   ++ GG++ +++   ++++ I  ++   + +K G     ++ A+ W +     +
Sbjct: 115 EPVEILLHYEGGVEAFVRHLDKSKTPILKDVIVIRGQKDGI---ELDLALWWNDSYHETM 171

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH    R +LTR +  Y E +    K   +   +D       +LSV 
Sbjct: 172 LCFTNNIPQRDGGTHLLAFRTSLTRVMGAYIESSGLAKKEKFAPTGEDAREGLTCVLSVK 231

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + +P+F+ QTK KLVS + +  VEN   +    +  ++P+EA  ++  +IE +  R   R
Sbjct: 232 VPDPKFSSQTKDKLVSSEVRPAVENLCSEGLSQWFEEHPVEAKLIVSKIIEAASAREAAR 291

Query: 434 KQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           K R+   RK+A+    LPGKLADC +     +ELFIVEGDSAGGSAKQARNR NQAVLPL
Sbjct: 292 KARDLTRRKSALEISSLPGKLADCQERDPAKSELFIVEGDSAGGSAKQARNRENQAVLPL 351

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKV 538
           RGKILNV  A  +++  ++ I  L+ ALG          + +RY K+
Sbjct: 352 RGKILNVERARFDRMLLSELIGTLILALGTGIGRDDFNADKVRYHKI 398


>gi|66474593|gb|AAY46866.1| GyrB [Aeromonas molluscorum]
          Length = 372

 Score =  190 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 133/383 (34%), Positives = 209/383 (54%), Gaps = 17/383 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS++L +T+ R   ++ Q +  G P +PL++     N  GT + F P   
Sbjct: 1   HGVGVSVVNALSEKLLLTIRRNGHVYEQTYHMGEPQAPLKQIGD-SNGTGTEVRFWPSAT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   +    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFTDTL-YHYDILAKRLRELSFLNSGVSIRLEDERDGRE-------VHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I   +F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQNKTPIHQNVFHFSTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
            R ALTR +  Y +    ++  +  +   DD+    + ++SV + +P+F+ QTK KLVS 
Sbjct: 169 FRTALTRTLNTYMDREDYSKKAKISAASGDDVREDLIAVISVKVPDPKFSSQTKDKLVSS 228

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRL 449
           + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK R    RK A+    L
Sbjct: 229 EVKTAVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAARKAREMTRRKGALDIAGL 288

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +++ +
Sbjct: 289 PGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVERARFDRMIS 348

Query: 510 NQQIMDLVQALGCRTRSQYREED 532
           +Q++  L+ ALGC         D
Sbjct: 349 SQEVGTLITALGCGIGRDEYNPD 371


>gi|71833758|emb|CAI94318.1| gyrase B [Helicobacter bilis]
          Length = 368

 Score =  190 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 128/380 (33%), Positives = 212/380 (55%), Gaps = 16/380 (4%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS +L +T+ + N I+ Q+F +GIP + LE   + +   GT I F PD
Sbjct: 1   GLHGVGVSVVNALSCKLIMTIYKNNKIYKQEFEKGIPTTELEIIGETKKH-GTTIEFFPD 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P+I      FD+  L +  +  AYL+  +K  +  +++ ++         F+F GGL  +
Sbjct: 60  PEIME-ITEFDSNILTRRFKEMAYLTHGIKIRFKDERDGSDTT-------FHFEGGLSQF 111

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++    N+  + ++I + +   +  H   +E A+A+ E    ++ S+ N I T +GGTHE
Sbjct: 112 IEDI--NKKTLITQILSFEAT-ENEHDSEIEIALAYNEGYDEKVLSFVNNIRTPDGGTHE 168

Query: 332 SGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G R  L+R I  Y E   N  ++ + ++ DD+    V I++  I +P+F GQTK KL S
Sbjct: 169 AGFRAGLSRAILNYIEANANTREKDVKVLGDDVREGLVAIVATKIMDPQFEGQTKGKLGS 228

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448
              +  V+    +    +  +NP +A  +++ V+  +  R   ++ R+   +   +    
Sbjct: 229 SFVKGIVQKLTYEKMSKFFEENPTQAKLIMQKVLIAARGREAAKRARDLTRKDNKVSVST 288

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGK ADC        E+++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  +  + I 
Sbjct: 289 LPGKFADCQSKDPSECEIYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRLDTIL 348

Query: 509 NNQQIMDLVQALGCRTRSQY 528
            +++I +++ A GC    ++
Sbjct: 349 KSEEIKNMITAFGCGIGDEF 368


>gi|35210351|dbj|BAC92687.1| gyrase B subunit [Sulfobacillus thermosulfidooxidans]
          Length = 388

 Score =  190 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 134/400 (33%), Positives = 206/400 (51%), Gaps = 16/400 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG+SVVNALS EL  T      +F Q +++G PL  + +        G
Sbjct: 1   GGVYKVSGGLHGVGLSVVNALSSELTATSRFNGGVFVQHYAKGKPLDAVTQVGTTTE-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
             + FRPD +IF D   F    L    + +A+L+  V      +             +F 
Sbjct: 60  FEVIFRPDAEIFEDVH-FSFDTLANRMREQAFLNAGVFLSLYEE-------ATGRSIQFE 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           F GG++++++    +R ++  +       K G     V+ A+ + +     I ++ NTI 
Sbjct: 112 FQGGVESFVEYLNLSRDVLHPKPIAFSGSKDGVM---VDVALQYNDTYNETIFTFANTIR 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAG 381
           T EGG+HE+G + ALTR    YA      +    ++  +D+      I+SV + EP+F G
Sbjct: 169 THEGGSHEAGFKSALTRVCNDYARKLGLLKDQDANLSGEDVREGITAIVSVKLPEPQFEG 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNR 440
           QTKTKL + + +   E    D    +  +NP  A ++LE  V         R+ +    R
Sbjct: 229 QTKTKLGNSEVRGITEGITADGLATFFEENPSVAKRILEKSVQAARAREAARKARELTRR 288

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+ +    LPGKL DCS      +EL++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV 
Sbjct: 289 KSVLESSALPGKLTDCSSRDPKESELYLVEGDSAGGSAKQGRDRRYQAILPLRGKILNVE 348

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            A  +KI  N++I  ++ A+G     ++  +  RY +++I
Sbjct: 349 RARVDKILANEEIRAMITAIGTGIGDEFVLDKARYHRIVI 388


>gi|209863345|gb|ACI88772.1| DNA gyrase subunit B [Aeromonas sp. JH97]
 gi|209863355|gb|ACI88777.1| DNA gyrase subunit B [Aeromonas sp. JH74]
          Length = 366

 Score =  190 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 134/377 (35%), Positives = 207/377 (54%), Gaps = 15/377 (3%)

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++     +  GT + F P P IF
Sbjct: 1   VGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIF 60

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            D   +    L K  +  ++L+  V      +++  E         F + GG+K +++  
Sbjct: 61  TDTL-YHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVEYL 112

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G R
Sbjct: 113 NQNKTPIHPKVFHFSTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFR 169

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS + +
Sbjct: 170 TALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVK 229

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
             VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGK
Sbjct: 230 TAVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGK 289

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q+
Sbjct: 290 LADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQE 349

Query: 513 IMDLVQALGCRTRSQYR 529
           +  L+ ALGC       
Sbjct: 350 VGTLITALGCGIGRDEY 366


>gi|295979471|dbj|BAJ07408.1| DNA gyrase subunit B [Delftia acidovorans]
 gi|295979475|dbj|BAJ07410.1| DNA gyrase subunit B [Delftia acidovorans]
 gi|295979483|dbj|BAJ07414.1| DNA gyrase subunit B [Delftia acidovorans]
          Length = 286

 Score =  190 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 95/292 (32%), Positives = 146/292 (50%), Gaps = 35/292 (11%)

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIPV-----ENHPKFPNKSTLEIILTTLHAGGKFD 144
           +AGY + I V++  +G L+V+DNGRGIP      + H   P +S  EI LT LHAGGKF+
Sbjct: 1   LAGYCDDILVTIHADGSLSVIDNGRGIPTRVKMDDKHE--PKRSAAEIALTELHAGGKFN 58

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR------------GIPLSP 192
            ++Y++SGGLHGVG+S VNALS  L ++V R   ++   FSR            G+ +SP
Sbjct: 59  QNSYKVSGGLHGVGVSCVNALSIWLKLSVRRDGEVYEIDFSRGQVQNRPIEIVDGVEVSP 118

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
           +    K  +KRGT++ F PD +IF     F    L K  +  ++L+  V+     +++  
Sbjct: 119 MRVVGK-SDKRGTKVHFLPDTEIFTQNHEFRYEILAKRLRELSFLNNGVRIRLKDERDGR 177

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT-------HRGTVEWA 305
           E         F   GG+  ++Q    N+ ++    F     +              VE A
Sbjct: 178 EDD-------FSGAGGVMGFVQFINANKKVLHPTAFHANGTRPAESYGGIPGTEIGVEVA 230

Query: 306 IAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
           + W +    ++  + N I   +GGTH +GLR A+TR I KY E  +  +   
Sbjct: 231 MQWNDSYAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIEQNELAKKAK 282


>gi|329112162|emb|CCA63116.1| DNA gyrase subunit B [Bacillus cereus ATCC 4342]
          Length = 354

 Score =  190 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 131/365 (35%), Positives = 196/365 (53%), Gaps = 15/365 (4%)

Query: 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN 177
           V    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG SVVNALS EL V V R  
Sbjct: 1   VGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTELEVFVHRDG 59

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            I  QK+ RGIP++ L+      +K GT   F+PDP+IF +   ++   L    +  A+L
Sbjct: 60  KIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETTEYEFDTLATRMRELAFL 118

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +K      +E  +K      +EF++ GG+K+Y++    ++  I  E    +  K G 
Sbjct: 119 NRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 172

Query: 298 HRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI- 355
               VE A+ + E       S+ N I T EGGTHE G + ALTR I  Y       +   
Sbjct: 173 Q---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDAD 229

Query: 356 -SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
            ++  +D+      I+S+    P+F GQTKTKL + +A+   E+   + F+ +L++NP  
Sbjct: 230 SNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNV 289

Query: 415 ATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A K+++   +        ++ +    RK+A+    LPGKLADCS      +E++IVEGDS
Sbjct: 290 ARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDS 349

Query: 474 AGGSA 478
           AGGSA
Sbjct: 350 AGGSA 354


>gi|295979473|dbj|BAJ07409.1| DNA gyrase subunit B [Delftia acidovorans]
 gi|295979489|dbj|BAJ07417.1| DNA gyrase subunit B [Delftia acidovorans]
          Length = 285

 Score =  190 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 95/292 (32%), Positives = 146/292 (50%), Gaps = 35/292 (11%)

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIPV-----ENHPKFPNKSTLEIILTTLHAGGKFD 144
           +AGY + I V++  +G L+V+DNGRGIP      + H   P +S  EI LT LHAGGKF+
Sbjct: 1   LAGYCDDILVTIHADGSLSVIDNGRGIPTRVKMDDKHE--PKRSAAEIALTELHAGGKFN 58

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR------------GIPLSP 192
            ++Y++SGGLHGVG+S VNALS  L ++V R   ++   FSR            G+ +SP
Sbjct: 59  QNSYKVSGGLHGVGVSCVNALSIWLKLSVRRDGEVYEIDFSRGQVQNRPIEIVDGVEVSP 118

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
           +    K  +KRGT++ F PD +IF     F    L K  +  ++L+  V+     +++  
Sbjct: 119 MRVVGK-SDKRGTKVHFLPDTEIFTQNHEFRYEILAKRLRELSFLNNGVRIRLKDERDGR 177

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT-------HRGTVEWA 305
           E         F   GG+  ++Q    N+ ++    F     +              VE A
Sbjct: 178 EDD-------FSGAGGVMGFVQFINANKKVLHPTAFHANGTRPAESYGGIPGTEIGVEVA 230

Query: 306 IAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
           + W +    ++  + N I   +GGTH +GLR A+TR I KY E  +  +   
Sbjct: 231 MQWNDSYAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIEQNELAKKAK 282


>gi|198042674|gb|ACH81162.1| GyrB [Alteromonas sp. UST981101-023]
          Length = 346

 Score =  190 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 122/357 (34%), Positives = 192/357 (53%), Gaps = 15/357 (4%)

Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192
           I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R      Q++  G+P +P
Sbjct: 1   IMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSSKLKLRIRRAGKAHEQEYHHGVPQAP 60

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
           L       +K GT I F P    F D   +    L K  +  ++L+  V      +++  
Sbjct: 61  LAVTGDT-DKTGTMIRFWPSADTFTDTL-YHYDILAKRLRELSFLNSGVSIRLKDERDGK 118

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
           E       + F + GG++ +++   E ++ +  ++F   +E++      VE A+ W +  
Sbjct: 119 E-------DHFMYEGGIQAFVEYLNEKKTPVHQKVFHFASEQED--GIAVEVAMQWNDSF 169

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGI 369
              +  + N I   +GGTH +G R ALTR +  Y E      K   +   DD       +
Sbjct: 170 QENVFCFTNNIPQRDGGTHLAGFRGALTRTLNNYMEKEGLNKKAKTNASGDDAREGLTAV 229

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEE 428
           +SV + +P+F+ QTK KLVS + +  VE+A+ +    +L++NP E+  +   +I+     
Sbjct: 230 ISVKVPDPKFSSQTKDKLVSSEVRPAVESAMNEKLADFLLENPAESKIIAGKIIDAARAR 289

Query: 429 RLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
              R+ +    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR 
Sbjct: 290 EAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRK 346


>gi|71833754|emb|CAI94316.1| gyrase B [Helicobacter bilis]
          Length = 368

 Score =  190 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 127/380 (33%), Positives = 212/380 (55%), Gaps = 16/380 (4%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS +L +T+ + N I+ Q+F +GIP + LE   + +   GT I F PD
Sbjct: 1   GLHGVGVSVVNALSCKLIMTIYKNNKIYKQEFEKGIPTTELEIIGETKKH-GTTIEFFPD 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P+I      FD+  L +  +  AYL+  +K  +  +++ ++         F+F GGL  +
Sbjct: 60  PEIME-ITEFDSNILTRRFKEMAYLTHGIKIRFKDERDGSDTT-------FHFEGGLSQF 111

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++    N+  + ++I + +   +  +   +E A+A+ E    ++ S+ N I T +GGTHE
Sbjct: 112 IEDI--NKKTLITQILSFEAT-ENEYDSEIEIALAYNEGYDEKVLSFVNNIRTPDGGTHE 168

Query: 332 SGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G R  L+R I  Y E   N  ++ + ++ DD+    V I++  I +P+F GQTK KL S
Sbjct: 169 AGFRAGLSRAILNYIEANANTREKDVKVLGDDVREGLVAIVATKIMDPQFEGQTKGKLGS 228

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448
              +  V+    +    +  +NP +A  +++ V+  +  R   ++ R+   +   +    
Sbjct: 229 SFVKGIVQKLTYEKMSKFFEENPTQAKLIMQKVLIAARGREAAKRARDLTRKDNKVSVST 288

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGK ADC        E+++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  +  + I 
Sbjct: 289 LPGKFADCQSKDPSECEIYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRLDTIL 348

Query: 509 NNQQIMDLVQALGCRTRSQY 528
            +++I +++ A GC    ++
Sbjct: 349 KSEEIKNMITAFGCGIGDEF 368


>gi|148470300|gb|ABQ66097.1| gyrase b [uncultured bacterium]
          Length = 381

 Score =  190 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 140/390 (35%), Positives = 206/390 (52%), Gaps = 17/390 (4%)

Query: 168 ELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARL 227
            L +T+ R       +F  G  ++PL         RGT I F P P  FG    F    L
Sbjct: 1   WLKLTIYRDGKRHFMEFREGDAVAPLAVVGDSPK-RGTEIHFLPSPLTFGTI-EFHYDIL 58

Query: 228 LKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEI 287
            +  +  ++L+  V       +   E       E F F GG++ +++     R+++   +
Sbjct: 59  ARRLRELSFLNNGVSILLKDLRHGQE-------ENFSFNGGVRGFVEYLNRTRTVLHPTV 111

Query: 288 FTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYA 346
           F    EK+G    TVE A+ W E     + S+ N I   +GGTH + LR A+TR +  + 
Sbjct: 112 FHSVGEKEGI---TVEVAMQWNESYQENVLSFTNNIPQRDGGTHLTALRAAMTRTLNHFI 168

Query: 347 ELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF 404
           E  +   K  +    DD+      +LSV + +P+F+ QTK KLVS + +  VE  + D  
Sbjct: 169 EENELARKAKVETTGDDMREGLTCVLSVKVPDPKFSSQTKEKLVSSEVRPAVEEVVSDQM 228

Query: 405 DHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHG 463
             +L++ P EA  ++  +IE +  R   RK RE   RK A+  L LPGKLADC +     
Sbjct: 229 RSFLLEKPAEARIIVGKIIEAARAREAARKARELTRRKGALDGLGLPGKLADCQEKDPAQ 288

Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523
            E+++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++Q+I+ L+ ALG  
Sbjct: 289 CEIYLVEGDSAGGSAKQGRDRRFQAILPLKGKILNVERARFDKLVSSQEIVTLITALGTG 348

Query: 524 TRSQYR-EEDLRYEKVIIMTDADVDGAHIA 552
                   E +RY ++IIMTDADVDG+HI 
Sbjct: 349 IGKDEYSPEKVRYHRIIIMTDADVDGSHIR 378


>gi|71833756|emb|CAI94317.1| gyrase B [Helicobacter bilis]
 gi|71833760|emb|CAI94319.1| gyrase B [Helicobacter bilis]
          Length = 368

 Score =  190 bits (482), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 127/380 (33%), Positives = 212/380 (55%), Gaps = 16/380 (4%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS +L +T+ + N I+ Q+F +GIP + LE   + +   GT I F PD
Sbjct: 1   GLHGVGVSVVNALSCKLIMTIYKNNKIYKQEFEKGIPTTELEIIGETKKH-GTTIEFFPD 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P+I      FD+  L +  +  AYL+  +K  +  +++ ++         F+F GGL  +
Sbjct: 60  PEIME-ITEFDSTILTRRFKEMAYLTHGIKIRFKDERDGSDTT-------FHFEGGLSQF 111

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++    N+  + ++I + +   +  +   +E A+A+ E    ++ S+ N I T +GGTHE
Sbjct: 112 IEDI--NKKTLITQILSFEAT-ENEYDSEIEIALAYNEGYDEKVLSFVNNIRTPDGGTHE 168

Query: 332 SGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G R  L+R I  Y E   N  ++ + ++ DD+    V I++  I +P+F GQTK KL S
Sbjct: 169 AGFRAGLSRAILNYIEANANTREKDVKVLGDDVREGLVAIVATKIMDPQFEGQTKGKLGS 228

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448
              +  V+    +    +  +NP +A  +++ V+  +  R   ++ R+   +   +    
Sbjct: 229 SFVKGIVQKLTYEKMSKFFEENPTQAKLIMQKVLIAARGREAAKRARDLTRKDNKVSVST 288

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGK ADC        E+++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  +  + I 
Sbjct: 289 LPGKFADCQSKDPSECEIYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRLDTIL 348

Query: 509 NNQQIMDLVQALGCRTRSQY 528
            +++I +++ A GC    ++
Sbjct: 349 KSEEIKNMITAFGCGIGDEF 368


>gi|330896993|gb|AEC48376.1| gyrase B [Streptomyces sp. 1209]
          Length = 382

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 126/382 (32%), Positives = 198/382 (51%), Gaps = 17/382 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  + V V      ++Q++  G+P +PL++ E      GT +TF
Sbjct: 2   VSGGLHGVGVSVVNALSTRVAVEVKTDGHRWTQEYKLGVPTAPLQRHEATEE-TGTSVTF 60

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI-----------AEKYGIP 258
             D  IF     +    L +  Q  A+L+  ++   + ++E             ++    
Sbjct: 61  WADGDIFETT-DYSFETLSRRFQEMAFLNKGLRINLADERESAKATAGADEAGEDEKHEV 119

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +   +++ GG+  +++     +  +          +      ++E A+ W       + S
Sbjct: 120 KSVSYHYEGGIVDFVKYLNSRKGEVIHPTVIDLEAEDRERHLSLEVAMQWNGGYTEGVYS 179

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIR 375
           + N I T EGGTHE G R ALT  I KYA   +   ++  ++  DD+      I+SV + 
Sbjct: 180 FANIIHTHEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISVKLS 239

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           EP+F GQTKTKL + + +  V+  + +    +L +NP EA  ++   I  +  R+  RK 
Sbjct: 240 EPQFEGQTKTKLGNTEVKTFVQKVVYEHLADWLDRNPNEAADIVRKGIAAATARVAARKA 299

Query: 436 REVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           R++ R+  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RG
Sbjct: 300 RDLTRRKGLLETASLPGKLSDCQSNDPIKCEIFIVEGDSAGGSAKSGRNPEYQAILPIRG 359

Query: 495 KILNVASAGSEKIRNNQQIMDL 516
           KILNV  A  ++I  NQ+I  +
Sbjct: 360 KILNVEKARIDRILQNQEIQAM 381


>gi|308153204|dbj|BAJ22191.1| DNA gyrase subunit B [Rhodococcus australis]
          Length = 420

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 130/426 (30%), Positives = 209/426 (49%), Gaps = 36/426 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  + + +    + ++Q ++   P   +E       + G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRVDLEIRNNGSFWNQTYTYAEPGPLVE--GVATRETG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
           T ++F PD +IF     F+A  + +  Q  A+L+  +    + ++               
Sbjct: 59  TSVSFWPDAQIFETV-KFNAETVARRLQEMAFLNKGLTITLTDERITEADVEAAPDVEGD 117

Query: 250 ----------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
                     E AEK    +   +++P GL  Y++     ++ +   +     +  G   
Sbjct: 118 DSAESIKTADERAEKIAKVKTRTYHYPDGLVDYIKHLNRTKNAVHKSVVGFAAKGTGH-- 175

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI- 357
             VE A+ W +     + ++ NTI T EGGTHE G R ALT  + KYA   +  +     
Sbjct: 176 -EVEIAMQWNDSYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLIKDKKED 234

Query: 358 --ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415
               DD+      ++SV + +P+F GQTKTKL + + +  V+ A  +    +   NP EA
Sbjct: 235 RLSGDDIREGLAAVISVKVGDPQFEGQTKTKLGNTEVKSFVQKACNEHLADWFEANPAEA 294

Query: 416 TKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSA 474
             ++    +  + R   R+    V RKTA     LPGKLADC       +E++IVEGDSA
Sbjct: 295 KIIIRKAADSHQARAAARRARDMVRRKTATDIGGLPGKLADCRSKDPEKSEVYIVEGDSA 354

Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
           GGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LR
Sbjct: 355 GGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDIAKLR 414

Query: 535 YEKVII 540
           Y K+++
Sbjct: 415 YHKIVL 420


>gi|295979469|dbj|BAJ07407.1| DNA gyrase subunit B [Delftia acidovorans]
 gi|295979477|dbj|BAJ07411.1| DNA gyrase subunit B [Delftia acidovorans]
 gi|295979479|dbj|BAJ07412.1| DNA gyrase subunit B [Delftia acidovorans]
 gi|295979481|dbj|BAJ07413.1| DNA gyrase subunit B [Delftia acidovorans]
 gi|295979485|dbj|BAJ07415.1| DNA gyrase subunit B [Delftia acidovorans]
 gi|295979487|dbj|BAJ07416.1| DNA gyrase subunit B [Delftia acidovorans]
          Length = 286

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 92/291 (31%), Positives = 141/291 (48%), Gaps = 33/291 (11%)

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIPV-----ENHPKFPNKSTLEIILTTLHAGGKFD 144
           +AGY + I V++  +G L+V+DNGRGIP      + H   P +S  EI LT LHAGGKF+
Sbjct: 1   LAGYCDDILVTIHADGSLSVIDNGRGIPTRVKMDDKHE--PKRSAAEIALTELHAGGKFN 58

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP-----------L 193
            ++Y++SGGLHGVG+S VNALS  L + V R   ++   FSRG   +             
Sbjct: 59  QNSYKVSGGLHGVGVSCVNALSIWLKLNVRRDGEVYEIDFSRGHVQNRPIEIVDGVEVSP 118

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
            +     +KRGT++ F PD +IF     F    L K  +  ++L+  V+     +++  E
Sbjct: 119 MRVVGKSDKRGTKVHFLPDTEIFTQNHEFRYEILAKRLRELSFLNNGVRIRLKDERDGRE 178

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT-------HRGTVEWAI 306
                    F   GG+  ++Q    N+ ++    F     +              VE A+
Sbjct: 179 DD-------FSGAGGVMGFVQFINANKKVLHPTAFHANGTRPAESYGGIPGTEIGVEVAM 231

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
            W +    ++  + N I   +GGTH +GLR A+TR I KY E  +  +   
Sbjct: 232 QWNDSYAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIEQNELAKKAK 282


>gi|71833762|emb|CAI94320.1| gyrase B [Helicobacter bilis]
 gi|93004062|emb|CAI94322.2| gyrase B [Helicobacter bilis ATCC 43879]
          Length = 368

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 127/380 (33%), Positives = 212/380 (55%), Gaps = 16/380 (4%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS +L +T+ + N I+ Q+F +GIP + LE   + +   GT I F PD
Sbjct: 1   GLHGVGVSVVNALSCKLIMTIYKNNKIYKQEFEKGIPTTELEIIGETKKH-GTTIEFFPD 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P+I      FD+  L +  +  AYL+  +K  +  +++ ++         F+F GGL  +
Sbjct: 60  PEIME-ITEFDSNILTRRFKEMAYLTHGIKIRFKDERDGSDTT-------FHFEGGLSQF 111

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++    N+  + ++I + +   +  +   +E A+A+ E    ++ S+ N I T +GGTHE
Sbjct: 112 IEDI--NKKTLITQILSFEAT-ENEYDSEIEIALAYNEGYDEKVLSFVNNIRTPDGGTHE 168

Query: 332 SGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G R  L+R I  Y E   N  ++ + ++ DD+    V I++  I +P+F GQTK KL S
Sbjct: 169 AGFRAGLSRAILNYIEANANTREKDVKVLGDDVREGLVAIVATKIMDPQFEGQTKGKLGS 228

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448
              +  V+    +    +  +NP +A  +++ V+  +  R   ++ R+   +   +    
Sbjct: 229 SFVKGIVQKLTYEKMAKFFEENPTQAKLIMQKVLIAARGREAAKRARDLTRKDNKVSVST 288

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGK ADC        E+++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  +  + I 
Sbjct: 289 LPGKFADCQSKDPSECEIYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRLDTIL 348

Query: 509 NNQQIMDLVQALGCRTRSQY 528
            +++I +++ A GC    ++
Sbjct: 349 KSEEIKNMITAFGCGIGDEF 368


>gi|323122046|gb|ADX30637.1| gyrase B [Verrucosispora sediminis]
          Length = 369

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 114/375 (30%), Positives = 194/375 (51%), Gaps = 9/375 (2%)

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS ++ V + +   ++ Q++    P +  +   +  ++ G+ ++F PDP
Sbjct: 1   LHGVGVSVVNALSTKMAVEIHKDGFVWRQQYHHSKPTALEK--GEPTDRTGSAVSFWPDP 58

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
            +F     FD   + +  Q  A+L+  +      ++    + G   +  F + GG+  ++
Sbjct: 59  DVFETV-DFDLQTIYRRLQEMAFLTRGLTIHLLDERVAEGEEGKLREVTFKYDGGIADFV 117

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +    +++ I   +     E++G    ++E A+ W E     + ++ N I T EGGTHE 
Sbjct: 118 RHLNASKTPIHKTVIEYGAEEEG---MSLEIAMQWNESYGESVYTFANNINTHEGGTHEE 174

Query: 333 GLRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           G R ALT  + +Y    +  +    +  +D+      I+SV +  P+F GQTKTKL +  
Sbjct: 175 GFRAALTSVVNRYGTDKKLLKGDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTP 234

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLP 450
            +  V+    D    +L +NP EA  ++ +           ++ ++   RK+ +    +P
Sbjct: 235 VKSFVQRVCNDRLVDWLDRNPAEAKIIITKASQAARARIAAQQARKLARRKSLLESGSMP 294

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC       +E+FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N
Sbjct: 295 GKLADCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKN 354

Query: 511 QQIMDLVQALGCRTR 525
            ++  L+ ALG    
Sbjct: 355 NEVQALITALGTGIH 369


>gi|327200341|gb|AEA36050.1| DNA gyrase subunit B [Agrobacterium rubi]
          Length = 358

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 131/367 (35%), Positives = 196/367 (53%), Gaps = 13/367 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  L + + R   I    F+ G+   PL+   +   + GT +TF
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLRIRRNGKIHEISFTHGVADGPLKIVGEYEGRSGTEVTF 60

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
               + F     +  A L    +  A+L+  V+   +  +    K     +EE  + GGL
Sbjct: 61  LASTETF-TMTEYTYATLEHRLRELAFLNSGVRILLTDKRHSDIK-----QEEMLYDGGL 114

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
             ++Q    ++  +  +      EK G    TVE A+ W +     +  + N I   +GG
Sbjct: 115 AAFVQYLDRSKKPLVDKPVYIIGEKDGI---TVEVAMWWNDTYHENMLCFTNNIPQRDGG 171

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  YA+ +   +   +    +D       +LSV + +P+F+ QTK K
Sbjct: 172 THMAGFRGALTRQVTSYADSSGITKREKVSLQGEDCREGLTAVLSVKVPDPKFSSQTKDK 231

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           LVS + +  VEN + +    +  ++P EA  L+  V+E +  R   RK RE   RK A+ 
Sbjct: 232 LVSSEVRPVVENLVNEALSTWFEEHPTEAKILVGKVVEAAIAREAARKARELTRRKGALD 291

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS+     +E+F+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +
Sbjct: 292 ISSLPGKLADCSERDPAKSEVFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFD 351

Query: 506 KIRNNQQ 512
           K+ ++Q+
Sbjct: 352 KMLSSQE 358


>gi|323146964|gb|ADX32775.1| DNA gyrase B subunit [endophytic bacterium 11(2011)]
          Length = 228

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 83/240 (34%), Positives = 127/240 (52%), Gaps = 27/240 (11%)

Query: 81  VIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTL 137
           V+DN++DE +AGY N I+V +  +  +++ DNGRG+P          P +S  EI++T L
Sbjct: 1   VLDNSIDEALAGYCNDIQVIIHADNSISITDNGRGVPTGLKMDDKHEPKRSAAEIVMTEL 60

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP-------- 189
           HAGGKFD ++Y++SGGLHGVG+S VNALS  L +TV R       +F RG+P        
Sbjct: 61  HAGGKFDQNSYKVSGGLHGVGVSCVNALSAWLRLTVRRDGKKHFMEFHRGVPQNRVIEEI 120

Query: 190 ----LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
               +SP++   +  N RGT + F  D  IFG+   +    L K  +  ++L+  V+   
Sbjct: 121 GGIAVSPIQVVGETEN-RGTEVHFMADETIFGN-VEYHYDILAKRIRELSFLNNGVRIRL 178

Query: 246 SCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
           +  +   E         F F GG+K +++   + +S++   IF    EK G     VE A
Sbjct: 179 TDQRSGKEDD-------FAFVGGVKGFVEYINKTKSVLHPTIFHVSGEKDGV---GVEVA 228


>gi|71833788|emb|CAI94333.1| gyrase B [Helicobacter hepaticus]
          Length = 366

 Score =  190 bits (481), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 133/379 (35%), Positives = 207/379 (54%), Gaps = 16/379 (4%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS  L +T+ +   I+ Q+F++GIP S LE     +   GT I F PD
Sbjct: 1   GLHGVGVSVVNALSKRLIMTIKKNGHIYRQEFAKGIPQSDLEVIGNTKKH-GTTIEFFPD 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            ++      FD   L++  +  AYL+  +   +  ++   E       E ++F GGLK +
Sbjct: 60  GEVMEVL-EFDKDILVRRFKEMAYLNHNITIQFKDERTQFE-------EIYHFEGGLKQF 111

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHES 332
           +Q   + + LISS I    TE++      + +   +   + ++ S+ N I T +GGTHE+
Sbjct: 112 IQDVNK-KPLISSIISFEATEQESEIEIALAYNEGY---DEKLLSFVNNIRTPDGGTHEA 167

Query: 333 GLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R  L+R I  Y E   N  ++   +  +D+    V I+S  I +P+F GQTK KL S 
Sbjct: 168 GFRAGLSRAIMNYIEANANAREKDAKVSGEDVREGLVAIISTKIIDPQFEGQTKGKLGSS 227

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
             +  V+    +    +  +NP EA  +++  I  +  R   +K R+   +K +     L
Sbjct: 228 FVKPIVQKLTYEKLSKFFEENPNEAKAIMQKAIMAARGREAAKKARDLTRKKESFSVGTL 287

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC       +E+++VEGDSAGGSAKQ R+R+ QA+LPLRGKILNV  +  +KI  
Sbjct: 288 PGKLADCQSKDPSVSEIYLVEGDSAGGSAKQGRDRTFQAILPLRGKILNVEKSRLDKILK 347

Query: 510 NQQIMDLVQALGCRTRSQY 528
           + +I +++ A GC    ++
Sbjct: 348 SDEIKNMITAFGCGIGEEF 366


>gi|330367275|dbj|BAK19432.1| DNA gyrase subunit B [Helicobacter marmotae]
          Length = 368

 Score =  190 bits (481), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 137/382 (35%), Positives = 205/382 (53%), Gaps = 18/382 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS  L +T+ +   I+ Q+F++GIP S LE     +   GT I F 
Sbjct: 1   SGGLHGVGVSVVNALSKHLIMTIKKNGHIYRQEFAKGIPQSDLEIIGNTKEH-GTTIEFF 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           PD ++      FDA  L+   +  AYL+  V   +  ++   E       E ++F GGL 
Sbjct: 60  PDGEVMEVL-EFDAQVLITRFKEMAYLNHNVTITFKDERTGLE-------ENYHFEGGLG 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            ++    + +  ISS I     E+       VE A+A+ E    ++ S+ N I T +GGT
Sbjct: 112 QFIHDINK-KPFISSIISFDCLEQD----CEVEVALAYNEGYDEKVLSFVNNIRTPDGGT 166

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           HE+G R  L+R I  Y E      ++   I  +D+    V I+S  + +P+F GQTK KL
Sbjct: 167 HEAGFRAGLSRAIMNYIEANASAREKDSKISGEDVREGLVAIISTKVIDPQFEGQTKGKL 226

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
            S   +  V+    +    +  +NP EA  +++  I  +  R   +K R+   +K     
Sbjct: 227 GSSFVKPIVQKLSYEKLSKFFEENPNEAKAIMQKAIMAARGREAAKKARDLTRKKENFSV 286

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC       +E+++VEGDSAGGSAKQ R+R+ QA+LPLRGKILNV  +  +K
Sbjct: 287 GTLPGKLADCQSKDPEKSEIYLVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKSRLDK 346

Query: 507 IRNNQQIMDLVQALGCRTRSQY 528
           I  + +I +++ A GC    ++
Sbjct: 347 ILKSDEIKNMITAFGCGIGDEF 368


>gi|71833764|emb|CAI94321.1| gyrase B [Helicobacter bilis]
          Length = 368

 Score =  190 bits (481), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 127/380 (33%), Positives = 212/380 (55%), Gaps = 16/380 (4%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS +L +T+ + N I+ Q+F +GIP + LE   + +   GT I F PD
Sbjct: 1   GLHGVGVSVVNALSCKLIMTIYKNNKIYKQEFEKGIPTTELEIIGETKKH-GTTIEFFPD 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P+I      FD+  L +  +  AYL+  +K  +  +++ ++         F+F GGL  +
Sbjct: 60  PEIME-ITEFDSNILTRRFKEMAYLTHDIKIRFKDERDGSDTT-------FHFEGGLSQF 111

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++    N+  + ++I + +   +  +   +E A+A+ E    ++ S+ N I T +GGTHE
Sbjct: 112 IEDI--NKKTLITQILSFEAT-ENEYDSEIEIALAYNEGYDEKVLSFVNNIRTPDGGTHE 168

Query: 332 SGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G R  L+R I  Y E   N  ++ + ++ DD+    V I++  I +P+F GQTK KL S
Sbjct: 169 AGFRAGLSRAILNYIEANANTREKDVKVLGDDVREGLVAIVATKIMDPQFEGQTKGKLGS 228

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448
              +  V+    +    +  +NP +A  +++ V+  +  R   ++ R+   +   +    
Sbjct: 229 SFVKGIVQKLTYEKMAKFFEENPTQAKLIMQKVLIAARGREAAKRARDLTRKDNKVSVST 288

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGK ADC        E+++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  +  + I 
Sbjct: 289 LPGKFADCQSKDPSECEIYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRLDTIL 348

Query: 509 NNQQIMDLVQALGCRTRSQY 528
            +++I +++ A GC    ++
Sbjct: 349 KSEEIKNMITAFGCGIGDEF 368


>gi|327200345|gb|AEA36052.1| DNA gyrase subunit B [Agrobacterium rubi]
          Length = 358

 Score =  190 bits (481), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 130/367 (35%), Positives = 196/367 (53%), Gaps = 13/367 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  L + + R   I    F+ G+   PL+   +   + GT +TF
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLRIRRNGKIHEISFTHGVADGPLKIVGEYEGRSGTEVTF 60

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
               + F     +  A L    +  A+L+  V+   +  +    K     +EE  + GGL
Sbjct: 61  LASTETF-TMTEYTYATLEHRLRELAFLNSGVRILLTDKRHSDIK-----QEEMLYDGGL 114

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
             +++    ++  +  +      EK G    TVE A+ W +     +  + N I   +GG
Sbjct: 115 AAFVRYLDRSKKPLVDKPVYIIGEKDGI---TVEVAMWWNDTYHENMLCFTNNIPQRDGG 171

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  YA+ +   +   +    +D       +LSV + +P+F+ QTK K
Sbjct: 172 THMAGFRGALTRQVTSYADSSGITKREKVSLQGEDCREGLTAVLSVKVPDPKFSSQTKDK 231

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           LVS + +  VEN + +    +  ++P EA  L+  V+E +  R   RK RE   RK A+ 
Sbjct: 232 LVSSEVRPVVENLVNEALSTWFEEHPTEAKILVGKVVEAAIAREAARKARELTRRKGALD 291

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS+     +E+F+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +
Sbjct: 292 ISSLPGKLADCSERDPAKSEVFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFD 351

Query: 506 KIRNNQQ 512
           K+ ++Q+
Sbjct: 352 KMLSSQE 358


>gi|115500938|dbj|BAF34139.1| B subunit gyrase [Pseudomonas indica]
          Length = 374

 Score =  190 bits (481), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 134/386 (34%), Positives = 199/386 (51%), Gaps = 16/386 (4%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
            + GGLHGV +SVVNALS+EL +T+ R   ++ Q +  G+P +PL       +  GT I 
Sbjct: 1   RVYGGLHGVRVSVVNALSEELRLTIRRSGKVWEQIYRHGVPQAPLAPVGDT-DGTGTEIH 59

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F+   + F +   F    L K  +  ++L+  V      ++   E       E F + GG
Sbjct: 60  FKASAETFTNIH-FSWDILAKRLRELSFLNSGVGIVLRDERSGKE-------ELFKYEGG 111

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           LK +++    N++ ++                 VE A+ W +     I  + N I   +G
Sbjct: 112 LKAFVEYLNTNKTAVNQVFHFNVQRDDCI---GVEVALQWNDSFNENILCFTNNIPQRDG 168

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH +G R ALTR +  Y E     +        DD       I+SV + +P+F+ QTK 
Sbjct: 169 GTHLAGFRSALTRHLNNYIEQEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKD 228

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAI 444
           KLVS + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+
Sbjct: 229 KLVSSEVKTAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGAL 288

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  
Sbjct: 289 DIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARF 348

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYRE 530
           +K+ ++Q++  L+ ALGC    +   
Sbjct: 349 DKMLSSQEVGTLITALGCGIGRKEYN 374


>gi|324962630|gb|ADY62417.1| gyrase subunit B [Frankia sp. BR]
 gi|324962632|gb|ADY62418.1| gyrase subunit B [Frankia sp. CeD]
 gi|324962634|gb|ADY62419.1| gyrase subunit B [Frankia sp. Allo2]
 gi|324962638|gb|ADY62421.1| gyrase subunit B [Frankia sp. Thr]
          Length = 360

 Score =  190 bits (481), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 102/335 (30%), Positives = 159/335 (47%), Gaps = 21/335 (6%)

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G + V DNGRGIPV  HP    +  +E++LTTLHAGGKFD  +Y +SGGLHGVG+
Sbjct: 1   TLLADGGVRVTDNGRGIPVGMHP-TEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHGVGV 59

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS  L V +     ++ Q +    P  PL K    R    + +TF  DP IF   
Sbjct: 60  SVVNALSTRLDVEIHLDGHVWFQPYVATRPDKPLAKTGTTRRTGTS-VTFWADPTIFET- 117

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             +    L +  Q  A+L+  +      +++            + +  GL  ++      
Sbjct: 118 TEYKYETLSRRLQEMAFLNKGLSITLVDERDEERVAVT-----YKYANGLVDFVGHLNAT 172

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  I   + + +++  G      E A+ W       + ++ NTI T EGGTHE G R AL
Sbjct: 173 KDTIHRSVISLESKGVGI---EAELAMQWNGGYTESVYTFANTINTHEGGTHEEGFRAAL 229

Query: 339 TRGIKKYAELTQNKRAISI---------ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           T  +  YA+     + +             DD+      I+SV + +P+F GQTKTKL +
Sbjct: 230 TSAVNAYAKDQNLLKPVKAGAKNSDERLSGDDIREGLTAIISVKLAQPQFEGQTKTKLGN 289

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            +A++ V+         +   N  EA  ++   ++
Sbjct: 290 TEAKKFVQEMCYSALKDWFEVNRTEARAIVSKALD 324


>gi|115500934|dbj|BAF34137.1| B subunit gyrase [Azotobacter armeniacus]
          Length = 377

 Score =  190 bits (481), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 140/388 (36%), Positives = 206/388 (53%), Gaps = 17/388 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SV NALS++L +T+ R N ++ Q +  G+P +PL      +   GT+I F
Sbjct: 1   VSGGLHGVGVSVGNALSEQLVLTIRRDNKVWEQTYMHGVPQAPLVAVGDTQG-TGTQIHF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +P  + F +   F    L K  +  ++L+  V      ++   E       E F + GGL
Sbjct: 60  KPSAETFHNIH-FSWDILAKRLRELSFLNSGVGIVLQDERSGKE-------ELFKYEGGL 111

Query: 270 KTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEG 327
           K ++     N++ +S       + E+ G     VE A+ W +  N  I  + N I   +G
Sbjct: 112 KAFVDYLNTNKNAVSQVFHFNMQREEDGV---GVEIALQWNDGFNENILCFTNNIPQRDG 168

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH +G R ALTR +  Y E      K  +    DD       I+SV + +P+F+ QTK 
Sbjct: 169 GTHLAGFRSALTRNLNAYIEQEGLAKKHKVVTTGDDAREGLTAIISVKVPDPKFSSQTKD 228

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAI 444
           KLVS + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+
Sbjct: 229 KLVSSEVKTAVEQEMGRYFGDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGAL 288

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC +      EL+IVEGDSA GSAKQ RNR  QA+LPL+GKILNV  A  
Sbjct: 289 DIAGLPGKLADCQEKDPALCELYIVEGDSADGSAKQGRNRRTQAILPLKGKILNVEKARF 348

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREED 532
           +K+ ++ ++  L+ ALGC    +    D
Sbjct: 349 DKMLSSAEVGTLITALGCGIGREEYNID 376


>gi|307592558|gb|ADN65367.1| DNA gyrase subunit B [Chryseobacterium soldanellicola]
          Length = 237

 Score =  190 bits (481), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 94/238 (39%), Positives = 154/238 (64%), Gaps = 7/238 (2%)

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA- 443
           TKL + +    V+  + +   ++L +NP EA  +++ V+  ++ R   +K RE+ ++ + 
Sbjct: 1   TKLGNSEVSGAVDKIVGEMLSNFLEENPNEAKIIVQKVVLAAKARQAAKKAREMVQRKSP 60

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKL+DCS      +ELF+VEGDSAGG+AKQ R+R  QA+LPLRGKILNV  + 
Sbjct: 61  MGGSGLPGKLSDCSSKDPAESELFLVEGDSAGGTAKQGRDRHFQAILPLRGKILNVEKSM 120

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTF 558
             K+ +N++I ++  ALG    ++          LRY KV+IMTDAD+DG+HI++L+LTF
Sbjct: 121 LHKVYDNEEIKNIYTALGVSVGTEEDSKALNMAKLRYHKVVIMTDADIDGSHISTLILTF 180

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616
           F++ M +LIE  ++++  PPL+ + +G K VYA++E+ +++   +    GKG +E+ R
Sbjct: 181 FFRFMKELIENGYIYIAQPPLYLLKKGNKKVYAYNEKEREEFTLDMSPDGKG-VEVQR 237


>gi|23451181|gb|AAN32695.1| DNA gyrase subunit B [Aeromonas enteropelogenes]
          Length = 371

 Score =  190 bits (481), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 136/382 (35%), Positives = 203/382 (53%), Gaps = 16/382 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR    Y +      K       D +    + ++SV +R P+F+ QTK KLVS +
Sbjct: 169 FRTALTRTFNFYMDKRNSSKKAQCPASGDYVREGLIAVISVKVRIPKFSSQTKDKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 229 VKTAVEQAMGEKLADFLLENPGDAKIVVSKIIDAARAREAARKARELTRRKGALDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +   ++
Sbjct: 289 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDXXXSS 348

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ A GC         D
Sbjct: 349 QEVGTLITAXGCGIGRDEYNPD 370


>gi|110624485|dbj|BAE98189.1| DNA gyrase B subunit [Shewanella colwelliana]
          Length = 373

 Score =  190 bits (481), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 133/382 (34%), Positives = 205/382 (53%), Gaps = 15/382 (3%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS++L +T+ R   ++ Q ++ G+P  P++         GT I F P  +
Sbjct: 1   HGVGVSVVNALSEKLQMTIRRDGKLYEQFYTHGVPNEPIKAIGDAT-TTGTEIRFWPSGE 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
            F D   F    L K  +  ++L+  V      +++  +       E F + GG+  ++ 
Sbjct: 60  TFTDV-EFHFDILAKRVRELSFLNSGVGIRLVDERDNRD-------EFFKYEGGISAFVD 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               N++ ++ E+F    E++     TVE A+ W +     I  + N I   +GGTH +G
Sbjct: 112 YLNVNKTPVNKEVFHFIQERED--GITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAG 169

Query: 334 LRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   S   DD       ++SV + +P+F+ QTK KLVS +
Sbjct: 170 FRSALTRNLNTYMDREGFNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSE 229

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLP 450
            +  VE  + +    YL+++P EA  ++  +I+ +  R   RK R    RK A+    LP
Sbjct: 230 VKTAVEQTMGEQLGDYLMEHPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLP 289

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 290 GKLADCQEKDPALSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 349

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC       + D
Sbjct: 350 QEVATLITALGCGIGRDEYDPD 371


>gi|209863309|gb|ACI88754.1| DNA gyrase subunit B [Aeromonas sp. JH89]
          Length = 366

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 136/378 (35%), Positives = 207/378 (54%), Gaps = 16/378 (4%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P I
Sbjct: 1   GVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPAI 59

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F D   F    L K  +  ++L+  V      +++  E         F + GG+K +++ 
Sbjct: 60  FSDTL-FHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------AHFCYEGGIKAFVEY 111

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G 
Sbjct: 112 LNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGF 168

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS + 
Sbjct: 169 RTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEV 228

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
           +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPG
Sbjct: 229 KTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPG 288

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q
Sbjct: 289 KLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQ 348

Query: 512 QIMDLVQALGCRTRSQYR 529
           ++  L+ ALGC       
Sbjct: 349 EVGTLITALGCGIGRDEY 366


>gi|161339242|gb|ABX64372.1| GyrB [Gordonia sp. CC-MJ-5]
          Length = 409

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 131/414 (31%), Positives = 201/414 (48%), Gaps = 39/414 (9%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD+  Y +SGGLHGVGISVVNALS ++ + +A     + Q +S   P    +      
Sbjct: 1   GKFDSDAYAVSGGLHGVGISVVNALSTKVELEIANDGFNWEQTYSYAKPGPLEK--GDAT 58

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP-- 258
            K GT + F PDP+IF +   F+A  + +  Q  A+L+  +    +  +  A +      
Sbjct: 59  RKTGTTVRFWPDPEIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEAPGDAN 118

Query: 259 ----------------------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
                                       +   +++P GL  Y++     +  I + +   
Sbjct: 119 GDDEAAPTTEVAETVKTETEKAAAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHTTVIGF 178

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             + +G     VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   
Sbjct: 179 NAKGEGH---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEK 235

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
           +   ++   +  DD+      ++SV + +P+F GQTKTKL + + +  V+    +   H+
Sbjct: 236 KLIKEKDGKLTGDDIREGLAAVISVKVADPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHW 295

Query: 408 LVQNPIEATKLLEWVIER-SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
              NP EA  +++   +        RR +  V RKTA     LPGKLADC  N     E+
Sbjct: 296 FEANPAEAKIIIKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEV 355

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
           +IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A 
Sbjct: 356 YIVEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAF 409


>gi|93004069|emb|CAI94337.2| gyrase B [Helicobacter pullorum]
          Length = 366

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 202/379 (53%), Gaps = 16/379 (4%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS  L +T+ +   I+ Q F++GIP   L    + +   GT I F PD
Sbjct: 1   GLHGVGVSVVNALSKSLQMTIYKNGQIYRQNFAQGIPQDELTIIGECKE-NGTTIEFIPD 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
             IF     F    L K  +  AYL+ ++   +  +++  E       E ++F GGL  +
Sbjct: 60  GTIFEVT-EFQREILAKRFKELAYLNKQITIHFKDERDNFE-------ETYHFEGGLNQF 111

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHES 332
           +    + + LIS+ I     E     +  + +   +   + ++ S+ N I T +GGTHES
Sbjct: 112 VSDLNK-KPLISTIISFEGLENDVEMQIALAYNDGF---DEKVLSFVNNIRTIDGGTHES 167

Query: 333 GLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R+ LTR I  Y E   N  ++   I  +D+    V I+SV + +P+F GQTK KL S 
Sbjct: 168 GFRMGLTRVITNYIEANANAREKDSKITGEDIREGLVAIVSVKVVDPQFEGQTKGKLGSS 227

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
             +  V+    +    +  +NP EA  +++  +  +  R   +K RE   +K       L
Sbjct: 228 FVRPIVQKLTFEKLTKFFEENPNEAKAIMQKALLAARGREAAKKARELTRKKETFSVGTL 287

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC       +E+++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  +  +KI  
Sbjct: 288 PGKLADCQSKDPSISEIYLVEGDSAGGSAKQGRDRVYQAILPLRGKILNVEKSRLDKILK 347

Query: 510 NQQIMDLVQALGCRTRSQY 528
           +++I +L+ ALGC     +
Sbjct: 348 SEEIKNLITALGCGIGEDF 366


>gi|110624477|dbj|BAE98185.1| DNA gyrase B subunit [Shewanella algidipiscicola]
          Length = 370

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 132/381 (34%), Positives = 204/381 (53%), Gaps = 15/381 (3%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS++L +T+ R   ++ Q ++ G+P +P+    +     GT I F P  + 
Sbjct: 1   GVGVSVVNALSEKLQMTIRRDGKVYEQFYTHGVPDAPISVVGEAA-TTGTEIRFWPSHET 59

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F D   F    L K  +  ++L+  V      +++  +       E F + GG+  ++  
Sbjct: 60  FTDV-EFHFDILAKRVRELSFLNSGVGIRLVDERDNRD-------EFFKYEGGISAFVDY 111

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              N++ ++ E+F    E+      TVE A+ W +     I  + N I   +GGTH +G 
Sbjct: 112 LNVNKTPVNKEVFHFIQERDD--GITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGF 169

Query: 335 RVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y +      K   S   DD       ++SV + +P+F+ QTK KLVS + 
Sbjct: 170 RSALTRNLNAYMDREGFNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEV 229

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451
           +  VE  + +    YL+++P EA  ++  +I+ +  R   RK R    RK A+    LPG
Sbjct: 230 KTAVEQTMGEQLSDYLMEHPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPG 289

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q
Sbjct: 290 KLADCQEKDPALSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 349

Query: 512 QIMDLVQALGCRTRSQYREED 532
           ++  L+ ALGC       + D
Sbjct: 350 EVATLITALGCGIGRDEYDPD 370


>gi|327200343|gb|AEA36051.1| DNA gyrase subunit B [Agrobacterium rubi]
          Length = 358

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 129/367 (35%), Positives = 195/367 (53%), Gaps = 13/367 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  L + + R   I    F+ G+   PL+   +   + GT +TF
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLRIRRNGKIHEISFTHGVADGPLKIVGEYEGRSGTEVTF 60

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
               + F     +  A L    +  A+L+  V+   +  +    K     +EE  + GGL
Sbjct: 61  LASTETF-TMTEYTYATLEHRLRELAFLNSGVRILLTDKRHSDIK-----QEEMLYDGGL 114

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
             +++    ++  +  +      EK G    TVE A+ W +     +  + N I   +GG
Sbjct: 115 AAFVRYLDRSKKPLVDKPVYIIGEKDGI---TVEVAMWWNDTYHENMLCFTNNIPQRDGG 171

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  YA+ +   +   +    +D       +LSV + +P+F+ QTK K
Sbjct: 172 THMAGFRGALTRQVTSYADSSGITKREKVSLQGEDCREGLTAVLSVKVPDPKFSSQTKDK 231

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           LVS + +  VEN + +    +  ++P EA  L+  V+E +  R   RK RE   RK A+ 
Sbjct: 232 LVSSEVRPVVENLVNEALSTWFEEHPTEAKILVGKVVEAAIAREAARKARELTRRKGALD 291

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS+     +E+ +VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +
Sbjct: 292 ISSLPGKLADCSERDPAKSEVLLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFD 351

Query: 506 KIRNNQQ 512
           K+ ++Q+
Sbjct: 352 KMLSSQE 358


>gi|66474603|gb|AAY46871.1| GyrB [Aeromonas sp. ym1]
          Length = 371

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 137/382 (35%), Positives = 210/382 (54%), Gaps = 16/382 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVV+ALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P 
Sbjct: 1   HGVGVSVVHALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPA 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFSDTL-FHYYILAKRLRELSFLNSGVSIRLRDERDGRE-------AHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 169 FRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 229 VKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 348

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC +       D
Sbjct: 349 QEVGTLITALGCGSGRDEYNPD 370


>gi|71833794|emb|CAI94336.1| gyrase B [Helicobacter pametensis]
          Length = 366

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 138/380 (36%), Positives = 212/380 (55%), Gaps = 18/380 (4%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS  L +T+ R   I+ Q+F +GIP S LE   + +   GT I F PD
Sbjct: 1   GLHGVGVSVVNALSRHLIMTIKRDGNIYRQEFKQGIPTSNLEIIGQTKEH-GTTIEFFPD 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            ++      FDA  L+K  +  AYL+  +   ++ +K         ++E+++F GGLK +
Sbjct: 60  GEVMEVL-EFDAEILIKRFKEMAYLNHNITISFTDEK-------TGKREKYHFEGGLKQF 111

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++    N+  + SEI +     +       E A+A+ E    ++ S+ N I T EGGTHE
Sbjct: 112 VEDI--NKKPLISEIISFDINDE---ELEAEIALAYNEGYDEKLLSFVNNIRTPEGGTHE 166

Query: 332 SGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G R  L+R I  Y E   N  ++   +  DD+    V I+S  + EP+F GQTK KL S
Sbjct: 167 AGFRAGLSRAILNYIEANANAREKDAKVTGDDVREGLVAIISTKVMEPQFEGQTKGKLGS 226

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448
              +  V+    +    +  +NPI+A  +++  +  +  R   +K RE   +K  +    
Sbjct: 227 SFVKPIVQKLTYEKLTKFFEENPIQAKAIMQKALLAARGREAAKKARELTRKKETLSVGT 286

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADC       +E+++VEGDSAGGSAKQ R+R+ QA+LPLRGKILNV  +  +KI 
Sbjct: 287 LPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRDRAYQAILPLRGKILNVEKSRLDKIL 346

Query: 509 NNQQIMDLVQALGCRTRSQY 528
            +++I +++ A GC    ++
Sbjct: 347 KSEEIKNMITAFGCGIGEEF 366


>gi|34810356|pdb|1PVG|A Chain A, Crystal Structure Of The Atpase Region Of Saccharomyces
           Cerevisiae Topoisomerase Ii
 gi|34810357|pdb|1PVG|B Chain B, Crystal Structure Of The Atpase Region Of Saccharomyces
           Cerevisiae Topoisomerase Ii
          Length = 418

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 84/413 (20%), Positives = 152/413 (36%), Gaps = 41/413 (9%)

Query: 34  AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE---------------------- 71
           +    SASD Y     + +  LE +  RP  YIG  +                       
Sbjct: 7   STEPVSASDKY-----QKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCXIEKNVTI 61

Query: 72  -KALHHLFSEVIDNAMDEVIAGYA-NLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKS 128
              L  +F E++ NA D  +   +   I+V++      + V ++G+GIP+E H K  N  
Sbjct: 62  VPGLFKIFDEILVNAADNKVRDPSXKRIDVNIHAEEHTIEVKNDGKGIPIEIHNK-ENIY 120

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN--TIFSQKFSR 186
             E I   L     +D+   +++GG +G G  + N  S E  +  A  N    + QK+  
Sbjct: 121 IPEXIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWEN 180

Query: 187 GIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
              +    K    +     T++TF+PD   FG K   +    +   +             
Sbjct: 181 NXSICHPPKITSYKKGPSYTKVTFKPDLTRFGXKELDNDILGVXRRRVYDINGSVRDINV 240

Query: 246 SCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
             + +   K    +     +   L+   Q          S+I T   E+        E A
Sbjct: 241 YLNGKSL-KIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYER---INNRWEVA 296

Query: 306 IAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
            A  + + +  S+ N+I T  GGTH + +       +KK +E+ + K+  S+ S  +  +
Sbjct: 297 FAVSDISFQQISFVNSIATTXGGTHVNYITDQ---IVKKISEILKKKKKKSVKSFQIKNN 353

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
               ++  I  P F  QTK +L +          +   + + + +  +     
Sbjct: 354 XFIFINCLIENPAFTSQTKEQLTTRVKDFGSRCEIPLEYINKIXKTDLATRXF 406


>gi|294963340|gb|ADF50157.1| DNA gyrase subunit B [Bacillus cereus]
          Length = 353

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 125/363 (34%), Positives = 197/363 (54%), Gaps = 14/363 (3%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS EL V V R+  I  QK+ RGIP++ L+      ++ GT   F+PDP+IF +   ++
Sbjct: 1   ALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETIVYE 59

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++  I
Sbjct: 60  FDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSKQPI 113

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGI 342
             E    +  K G     VE A+ + E       S+ N I T EGGTHE G + ALTR I
Sbjct: 114 HEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVI 170

Query: 343 KKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E+  
Sbjct: 171 NDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVF 230

Query: 401 RDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
            + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPGKLADCS  
Sbjct: 231 SEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSK 290

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
               +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  ++ A
Sbjct: 291 DPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITA 350

Query: 520 LGC 522
           +G 
Sbjct: 351 IGT 353


>gi|326649336|gb|AEA02126.1| DNA gyrase subunit B [Rhizobium sp. Ch12]
 gi|326649338|gb|AEA02127.1| DNA gyrase subunit B [Rhizobium sp. AL9.3]
 gi|327200383|gb|AEA36071.1| DNA gyrase subunit B [Rhizobium sp. Ch11]
          Length = 358

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 130/367 (35%), Positives = 195/367 (53%), Gaps = 13/367 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  L + + R   I    F+ G+   PL+   +   + GT +TF
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLRIRRNGKIHEISFTHGVADGPLKIVGEYEGRSGTEVTF 60

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
               + F     +  A L    +  A+L+  V+   +  +    K     +EE  + GGL
Sbjct: 61  LASTETF-TMTEYTYATLEHRLRELAFLNSGVRILLTDKRHSDIK-----QEEMLYDGGL 114

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
             +++     +  +  +      EK G    TVE A+ W +     +  + N I   +GG
Sbjct: 115 AAFVRYLDRAKKPLVDKPVYIIGEKDGI---TVEVAMWWNDTYHENMLCFTNNIPQRDGG 171

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  YA+ +   +   +    +D       +LSV + +P+F+ QTK K
Sbjct: 172 THMAGFRGALTRQVTSYADSSGITKREKVSLQGEDCREGLTAVLSVKVPDPKFSSQTKDK 231

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           LVS + +  VEN + +    +  ++P EA  L+  V+E +  R   RK RE   RK A+ 
Sbjct: 232 LVSSEVRPVVENLVNEALSTWFEEHPTEAKILVGKVVEAAIAREAARKARELTRRKGALD 291

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS+     +E+F+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +
Sbjct: 292 IASLPGKLADCSERDPAKSEVFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFD 351

Query: 506 KIRNNQQ 512
           K+ ++Q+
Sbjct: 352 KMLSSQE 358


>gi|295979511|dbj|BAJ07428.1| DNA gyrase subunit B [Comamonas testosteroni]
          Length = 283

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 91/291 (31%), Positives = 142/291 (48%), Gaps = 33/291 (11%)

Query: 90  IAGYANLIEVSLDGNGFLTVVDNGRGIPV-----ENHPKFPNKSTLEIILTTLHAGGKFD 144
           +AGY + I V++  +G L+V+DNGRGIP      + H   P +S  EI LT LHAGGKF+
Sbjct: 1   LAGYCDDILVTIHADGSLSVIDNGRGIPTRVKMDDKHE--PKRSAAEIALTELHAGGKFN 58

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP-----------L 193
            ++Y++SGGLHGVG+S VNALS  L +TV+R        FSRG   +             
Sbjct: 59  QNSYKVSGGLHGVGVSCVNALSIWLKLTVSRDGVRHEIDFSRGFVQNRLIEVVDGTEVSP 118

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
            +     +KRGT++ F PD +IF +   F    L K  +  ++L+  V+     +++  E
Sbjct: 119 MRVVGPSDKRGTKVHFLPDQEIFKENFEFRYEILAKRLRELSFLNNGVRIRLKDERDGKE 178

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT-------HRGTVEWAI 306
                    F   GG+K +++     + ++    F  +  +              VE A+
Sbjct: 179 DD-------FSGAGGVKGFVEFINGTKKVLHPTTFYAEGTRPAETYGGIPGTEIGVEVAM 231

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
            W +    ++  + N I   +GGTH +GLR A+TR I KY    +  +   
Sbjct: 232 QWNDSYAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIADNELAKKAK 282


>gi|148971323|gb|ABR20199.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 439

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 142/446 (31%), Positives = 212/446 (47%), Gaps = 28/446 (6%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT-IFSQKFSRGIP 189
           E+I+T LHAGGKFD   Y+ SGGLHGVG+SVV AL+  L   V R+    F+  + +G  
Sbjct: 1   EVIMTVLHAGGKFDGEVYDYSGGLHGVGVSVVCALASRLEAQVWRETEGSFTIAYEQGKL 60

Query: 190 LSP-LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
           + P  ++     +  GTRI F PDP+IFGD    D   +L+  +SKAYL   ++      
Sbjct: 61  VQPLRKRPGSKAHPHGTRIKFWPDPEIFGDAV-VDFDAVLERCRSKAYLIPGLRVDVIDR 119

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH---------- 298
           +        P K  +    GL   L     N       I    T ++             
Sbjct: 120 R-----LDPPVKHTYTSRNGLVDLLGHLANNPLHKPIIIEGEGTYEETVQVLGDDGIRAQ 174

Query: 299 ----RGTVEWAIAWCEENPEITSY-CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR 353
                G +E A+ W            N + T  GGTH +GL  AL+R + K AE ++ K+
Sbjct: 175 NMERTGRLELALVWTGGYETQFQLAVNQVTTPRGGTHLTGLNQALSRVVVKAAEGSRVKK 234

Query: 354 AISIISDDL--MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           A     +    M     ++ + I EP+F GQ K +L +  A + V   +      +    
Sbjct: 235 AKDPSPNKDDVMEGLCLVMHLQIPEPQFNGQAKEELGTPQAHQLVYWIVARELAKWFETA 294

Query: 412 PIEATKLLEWVIERSEERLRRRKQR--EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           P    +++   +  +       ++      +K   + L LP +L+D  Q+    +EL IV
Sbjct: 295 PRTHVRVVLEKVMAAARARDAARRSRDMARKKDRNQVLALPAELSDSYQHYPEESELLIV 354

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           EGDSA G AK  R++  QAVLP+RGKILN A A +  + +N ++  +  ALG +   +  
Sbjct: 355 EGDSAAGPAKAGRDQRFQAVLPIRGKILNAARASAHDLASNAEVTAIFSALGLQPGPKCD 414

Query: 530 EEDLRYEKVIIMTDADVDGAHIASLL 555
            E  RY +V+IMT  DVDG+HI +LL
Sbjct: 415 PEQRRYTRVVIMT-EDVDGSHIRTLL 439


>gi|16555887|dbj|BAB69704.2| topoisomerase IV [Salmonella paratyphi]
          Length = 163

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 77/163 (47%), Positives = 106/163 (65%), Gaps = 2/163 (1%)

Query: 462 HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
           + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+  A+G
Sbjct: 3   NRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIG 62

Query: 522 CRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581
               S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  PPL+R
Sbjct: 63  IDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVKNGHVYVALPPLYR 121

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
           I  G +  YA  EE K  +LE+ K+  KGK  + RFKGLGEM 
Sbjct: 122 IDLGKEVYYALTEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMN 163


>gi|298230621|ref|ZP_06964302.1| DNA gyrase subunit B [Streptococcus pneumoniae str. Canada MDR_19F]
          Length = 115

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 51/99 (51%), Positives = 74/99 (74%), Gaps = 1/99 (1%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I+V 
Sbjct: 10  AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVF 69

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139
           ++ +  +TVVD+GRGIPV+   K   +  +E + T LHA
Sbjct: 70  IEPDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHA 107


>gi|161339234|gb|ABX64368.1| GyrB [Gordonia sp. CC-MJ-1a]
 gi|161339236|gb|ABX64369.1| GyrB [Gordonia sp. CC-MJ-1b]
 gi|161339264|gb|ABX64383.1| GyrB [Gordonia sp. CC-MJ-28]
 gi|161339266|gb|ABX64384.1| GyrB [Gordonia sp. CC-MJ-33a]
 gi|161339268|gb|ABX64385.1| GyrB [Gordonia sp. CC-MJ-37]
 gi|161339272|gb|ABX64387.1| GyrB [Gordonia sp. CC-MJ-39a]
 gi|161339274|gb|ABX64388.1| GyrB [Gordonia sp. CC-MJ-39b1-1]
 gi|161339284|gb|ABX64393.1| GyrB [Gordonia sp. CC-MJ-48]
 gi|161339288|gb|ABX64395.1| GyrB [Gordonia sp. CC-T1-1]
 gi|161339290|gb|ABX64396.1| GyrB [Gordonia sp. CC-T1-3]
 gi|161339294|gb|ABX64398.1| GyrB [Gordonia sp. CC-TN-5]
          Length = 408

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 131/413 (31%), Positives = 201/413 (48%), Gaps = 39/413 (9%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD+  Y +SGGLHGVGISVVNALS ++ + +A     + Q +S   P    +      
Sbjct: 1   GKFDSDAYAVSGGLHGVGISVVNALSTKVELEIANDGFNWEQTYSYAKPGPLEK--GDAT 58

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP-- 258
            K GT + F PDP+IF +   F+A  + +  Q  A+L+  +    +  +  A +      
Sbjct: 59  RKTGTTVRFWPDPEIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEAPGDAN 118

Query: 259 ----------------------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
                                       +   +++P GL  Y++     +  I + +   
Sbjct: 119 GDDEAAPTTEVAETVKTETEKAAAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHTTVIGF 178

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             + +G     VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   
Sbjct: 179 NAKGEGH---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEK 235

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
           +   ++   +  DD+      ++SV + +P+F GQTKTKL + + +  V+    +   H+
Sbjct: 236 KLIKEKDGKLTGDDIREGLAAVISVKVADPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHW 295

Query: 408 LVQNPIEATKLLEWVIER-SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
              NP EA  +++   +        RR +  V RKTA     LPGKLADC  N     E+
Sbjct: 296 FEANPAEAKIIIKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEV 355

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
           +IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A
Sbjct: 356 YIVEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITA 408


>gi|327200401|gb|AEA36080.1| DNA gyrase subunit B [Rhizobium gallicum]
          Length = 358

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 134/367 (36%), Positives = 202/367 (55%), Gaps = 13/367 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  L + + RQ  I    F+ G+  +PL+   +  +  GT ++F
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLKIRRQGKIHEMSFTHGVADAPLKVTGEAGSDTGTEVSF 60

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P    F     FD   L    +  A+L+  V+   +  +    K     +EE  + GGL
Sbjct: 61  MPSTGTFT-MTDFDYGTLEHRLRELAFLNSGVRILLTDKRHSDIK-----QEEMRYDGGL 114

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328
           + ++      +  +  +  + + EK G    TVE A+ W +   E    + N I   +GG
Sbjct: 115 EAFVSYLDRAKKPLVDKPVSIRGEKDGI---TVEVAMWWNDSYHENVLCFTNNIPQRDGG 171

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  YA+ +    K  +++  +D       +LSV + +P+F+ QTK K
Sbjct: 172 THMAGFRAALTRQVVSYADSSGITKKEKVTLQGEDCREGLTAVLSVKVPDPKFSSQTKDK 231

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           LVS + +  VE+ + +    +  ++P EA  L+  V+E +  R   RK RE   RK A+ 
Sbjct: 232 LVSSEVRPVVESLVNEALSTWFEEHPSEAKVLVGKVVEAAAAREAARKARELTRRKGALD 291

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS+     +E+F+VEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  +
Sbjct: 292 IASLPGKLADCSERDPAKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 351

Query: 506 KIRNNQQ 512
           K+ ++Q+
Sbjct: 352 KMLSSQE 358


>gi|10121865|gb|AAG13405.1|AF285159_1 topoisomerase II alpha-4 [Homo sapiens]
          Length = 581

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 68/389 (17%), Positives = 135/389 (34%), Gaps = 51/389 (13%)

Query: 17  QGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD------ 70
           Q  +E ++ +    +  A    S    Y          LE + +RP  YIG  +      
Sbjct: 7   QPVNENMQVNKIKKNEDAKKRLSVERIYQKK-----TQLEHILLRPDTYIGSVELVTQQM 61

Query: 71  ----------------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDN 112
                              L+ +F E++ NA D        + I V++D  N  +++ +N
Sbjct: 62  WVYDEDVGINYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNN 121

Query: 113 GRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVT 172
           G+GIPV  H K        +I   L     +D+   +++GG +G G  + N  S +  V 
Sbjct: 122 GKGIPVVEH-KVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVE 180

Query: 173 V--ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLL 228
                   +F Q +   +  +   + +    +  T ITF+PD   F  +       A ++
Sbjct: 181 TASREYKKMFKQTWMDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMV 240

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           +     A  +  VK   + +K   +              G ++Y+   L+++   +    
Sbjct: 241 RRAYDIAGSTKDVKVFLNGNKLPVK--------------GFRSYVDMYLKDKLDETGNSL 286

Query: 289 TGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
               E+        E  +   E+  +  S+ N+I T +GG H   +   +   +    + 
Sbjct: 287 KVIHEQVNH---RWEVCLTMSEKGFQQISFVNSIATSKGGRHVDYVADQIVTKLVDVVKK 343

Query: 349 TQNKRAISIISDDLMISAVGILSVFIREP 377
                         + +   +    +R  
Sbjct: 344 KNKGGVAVKAHQRELCNGAILAHCNLRLM 372


>gi|66474601|gb|AAY46870.1| GyrB [Aeromonas sp. SF8-170]
          Length = 371

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 131/382 (34%), Positives = 206/382 (53%), Gaps = 16/382 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS++L +T+ R   ++ Q +  G P +PL++     N  GT + F P   
Sbjct: 1   HGVGVSVVNALSEKLLLTIRRNGHVYEQTYHMGEPQAPLKQIGD-SNGTGTEVRFWPSAT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   +    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFTDTL-YHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     V+ A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQNKTPIHPKVFHFSTEQDGI---GVKVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAE--LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 169 FRTALTRTLNTYMDKEDHSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE  + +    +L++NP +A  ++  +I+ +  R   RK RE   R  A+    L 
Sbjct: 229 VKTAVEQTMGEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRNGALDITGLL 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +++ ++
Sbjct: 289 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVERARFDRMISS 348

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 349 QEVGTLITALGCGIGRDEYNPD 370


>gi|37724717|gb|AAO26626.1| DNA gyrase [Bisgaard Taxon 37]
          Length = 389

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 116/399 (29%), Positives = 199/399 (49%), Gaps = 18/399 (4%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD++++++SGGLHGVG+SVVNALS +  + + R   +  Q +  G+P +PL       +
Sbjct: 1   KFDDNSHKVSGGLHGVGVSVVNALSSKPLLRIRRDGKVHEQTYHNGVPQAPLTVTG-TTD 59

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           K GT + F P  + F +        L    +  ++L+  V+     +++          +
Sbjct: 60  KTGTMVRFWPSHETFKNVTEVSYDILCNRLRELSFLNSNVRIELKDERD-------GRHD 112

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
           EF++ GGL+ +++    N+++I+ E F  ++         ++    W +     +  + N
Sbjct: 113 EFHYAGGLQEFVKFLNTNKTVINEEPFYFQS-VNEELGIPLKLQWQWTDTYKESVHCFTN 171

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAEL-------TQNKRAISIISDDLMISAVGILSVF 373
            I   +G TH +  + ALTR +K Y E        ++    + I  DD     V I+SV 
Sbjct: 172 NIPQRDGCTHLNCFKAALTRSLKGYIEREVIANAKSKAFIDLKIDGDDSREGLVAIISVK 231

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           +  P+F+ QTK KLVS + +  VE+ + D F   L +NP  A  +++ VI  +       
Sbjct: 232 VPNPKFSSQTKDKLVSSEVRGVVESTINDKFQTILEENPKIARTIVDKVISAART-REAA 290

Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
           ++     +T  +      KL  C+       E+++VEGDSAGGSA +     +QA+LPL+
Sbjct: 291 RRARELARTNKKHTFTTNKLVHCNSRNPEECEVYLVEGDSAGGSALKLVTCKSQAILPLK 350

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           GKILNV  A  +K+ ++Q++  L+ ALGC         D
Sbjct: 351 GKILNVXKARFDKMLSSQEVATLITALGCGIGRDEYNPD 389


>gi|327200337|gb|AEA36048.1| DNA gyrase subunit B [Agrobacterium sp. 81K]
          Length = 358

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 129/367 (35%), Positives = 193/367 (52%), Gaps = 13/367 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  L + + R   I    F+ G+   PL+       + GT +TF
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLRIRRNGKIHEISFTHGVADGPLKIVGDYEGRSGTEVTF 60

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
               + F     +    L    +  A+L+  V+   +  +    K     +EE  + GGL
Sbjct: 61  LASTETF-TMTEYTYGTLEHRLRELAFLNSGVRILLTDKRHSDIK-----QEEMLYDGGL 114

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
             +++     +  +  +      EK G    TVE A+ W +     +  + N I   +GG
Sbjct: 115 AAFVRYLDRAKKPLVDKPVYIIGEKDGI---TVEVAMWWNDTYHENMLCFTNNIPQRDGG 171

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  YA+ +   +   +    +D       +LSV + +P+F+ QTK K
Sbjct: 172 THMAGFRGALTRQVTSYADSSGITKREKVSLQGEDCREGLTAVLSVKVPDPKFSSQTKDK 231

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           LVS + +  VEN + +    +  ++P EA  L+  V+E +  R   RK RE   RK A+ 
Sbjct: 232 LVSSEVRPVVENLVNEALSTWFEEHPTEAKILVGKVVEAAIAREAARKARELTRRKGALD 291

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS+     +E+F+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +
Sbjct: 292 ISSLPGKLADCSERDPAKSEVFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFD 351

Query: 506 KIRNNQQ 512
           K+ ++Q+
Sbjct: 352 KMLSSQE 358


>gi|319958720|gb|ADV90530.1| DNA gyrase subunit B [Bacillus amyloliquefaciens]
          Length = 365

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 134/374 (35%), Positives = 200/374 (53%), Gaps = 13/374 (3%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LS  L VTV R   I  Q + RG+P++ LE      +K GT   F PDP+IF +   +D 
Sbjct: 1   LSTTLDVTVHRDGKIHYQAYERGVPVADLEVIGDT-DKTGTITHFVPDPEIFKETTVYDY 59

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             L    +  A+L+  V       +E  E+        +++ GG+K+Y++    ++ ++ 
Sbjct: 60  DLLSNRVRELAFLTKGVNITIEDKREGQERKNE-----YHYEGGIKSYVEYLNRSKEVVH 114

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
            E    + EK G    TVE A+ + +     I S+ N I T EGGTHE+G +  LTR I 
Sbjct: 115 EEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVIN 171

Query: 344 KYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            YA       +   ++  DD+      I+S+   +P+F GQTKTKL + +A+   +    
Sbjct: 172 DYARRKGIFKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFS 231

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNI 460
              + +L++NP  A K++E  +  +  R+  +K RE   RK+A+    LPGKLADCS   
Sbjct: 232 SALETFLLENPDSARKIVEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKD 291

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  ++ AL
Sbjct: 292 PSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITAL 351

Query: 521 GCRTRSQYREEDLR 534
           G      +  E  R
Sbjct: 352 GTGIGEDFNLEKAR 365


>gi|71833752|emb|CAI94315.1| gyrase B [Helicobacter aurati]
          Length = 366

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 124/379 (32%), Positives = 205/379 (54%), Gaps = 16/379 (4%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS +L +T+ + N I+ Q+F +GIP + LE     +   GT I F PD
Sbjct: 1   GLHGVGVSVVNALSSKLTMTIHKNNKIYKQEFEKGIPTTELEVIGNTKKH-GTTIEFFPD 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            +I      F +  L+K  +  AYL+  +   +  ++   +       E F F GGLK +
Sbjct: 60  SEIMEVT-EFHSETLIKRFKEMAYLTHGITITFQDERCNIK-------EIFSFEGGLKQF 111

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHES 332
           ++     +  IS  +    +E        + +  ++   + ++ S+ N I T +GGTHE+
Sbjct: 112 IEDINR-KPFISQIVNFEASENDTEIEIALAYNESY---DEKLLSFVNNIRTLDGGTHET 167

Query: 333 GLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R  L+R I  Y E   N  ++ + ++ DD+    + I+S  I +P+F GQTK+KL S 
Sbjct: 168 GFRAGLSRAILNYIETNANAREKDVKVLGDDVREGLIAIISAKIMDPQFEGQTKSKLGSS 227

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
             +  ++    +    +  +NP +A  +++ V+  +  R   ++ R+   +   I    L
Sbjct: 228 FVKGIIQKLTYEKISKFFEENPNQAKLIMQKVLIAARSREAAKRARDLTRKDNKISISTL 287

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGK ADC       +E+++VEGDSAGGSAKQAR+R  QA+LPL+GKILNV  +  + I  
Sbjct: 288 PGKFADCQSKDPSISEIYLVEGDSAGGSAKQARDRKFQAILPLKGKILNVEKSRLDTILK 347

Query: 510 NQQIMDLVQALGCRTRSQY 528
           +++I +++ A GC    ++
Sbjct: 348 SEEIKNMITAFGCGIGDEF 366


>gi|71898810|ref|ZP_00680978.1| DNA gyrase, subunit B, C-terminal [Xylella fastidiosa Ann-1]
 gi|71731396|gb|EAO33459.1| DNA gyrase, subunit B, C-terminal [Xylella fastidiosa Ann-1]
          Length = 151

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 89/154 (57%), Gaps = 5/154 (3%)

Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAH 592
           +RY K++I+ DAD DG HIA+LL   F +    L+   H+F+  PPLFR+  G +  YA 
Sbjct: 1   MRYGKIVILADADSDGLHIATLLTALFLKHFPGLVAAGHVFVAMPPLFRVDVGKQVFYAL 60

Query: 593 DEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651
           D+E K  +LE+ ++   KG++ ++RFKGLGEM   QL+E+ +  + R L+++ ++ +  +
Sbjct: 61  DDEEKTILLEKIQREKIKGQVSVTRFKGLGEMNPQQLRESTIHPDTRRLVQLTMDDNTQT 120

Query: 652 LKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
                     L   +A +R ++++ + +    + 
Sbjct: 121 CSLMDML---LAKKRASDRKQWLETKGNLAS-LD 150


>gi|323146966|gb|ADX32776.1| DNA gyrase B subunit [endophytic bacterium 15(2011)]
          Length = 218

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 121/224 (54%), Gaps = 24/224 (10%)

Query: 77  LFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEII 133
           L  EV+DN++DE +AGY N I+V +  +  +++ DNGRG+P          P +S  EI+
Sbjct: 1   LVFEVLDNSIDEALAGYCNDIQVIIHADNSISITDNGRGVPTGLKMDDKHEPKRSAAEIV 60

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP---- 189
           +T LHAGGKFD ++Y++SGGLHGVG+S VNALS  L +TV R       +F RG+P    
Sbjct: 61  MTELHAGGKFDQNSYKVSGGLHGVGVSCVNALSAWLRLTVRRDGKKHFMEFHRGVPQNRV 120

Query: 190 --------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241
                   +SP++   +  N RGT + F  D  IFG+   +    L K  +  ++L+  V
Sbjct: 121 IEEIGGIAVSPIQVVGETEN-RGTEVHFMADETIFGN-VEYHYDILAKRIRELSFLNNGV 178

Query: 242 KTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
           +   +  +   E         F F GG+K +++   + +S++  
Sbjct: 179 RIRLTDQRSGKEDD-------FAFVGGVKGFVEYINKTKSVLHP 215


>gi|71833778|emb|CAI94328.1| gyrase B [Helicobacter cholecystus]
          Length = 366

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 133/380 (35%), Positives = 213/380 (56%), Gaps = 18/380 (4%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS +L +T+ R   I+ Q+F +G+P + LE   K +   GT I F PD
Sbjct: 1   GLHGVGVSVVNALSRKLIMTIKRDGNIYRQEFQKGVPTTALEIIGKTKEH-GTTIEFYPD 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            ++      FD+  L+K  +  AYL+  +   ++ +K          +E+++F GGLK +
Sbjct: 60  GEVMEVL-EFDSEILIKRFKEMAYLNRNIIISFTDEK-------NGRREKYHFEGGLKQF 111

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++    N+  + SEI + +   +       E A+A+ E    ++ S+ N I T +GGTHE
Sbjct: 112 VEDI--NKKPLLSEIISFEVSDE---ELEAEIALAYNEGYDEKVLSFVNNIRTPDGGTHE 166

Query: 332 SGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G R  L+R I  Y +   N  ++   +  DD+    V I+S  + EP+F GQTK KL S
Sbjct: 167 AGFRAGLSRAIINYIDANANTREKDSKVTGDDVREGLVAIISTKVMEPQFEGQTKGKLGS 226

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448
              +  ++    +    +  +NPI+A  +++  +  +  R   +K RE   +K  +    
Sbjct: 227 SFVKPIIQKLTYEKLTKFFEENPIQAKAIMQKALLAARGREAAKKARELTRKKETLSVGT 286

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADC       +E+++VEGDSAGGSAKQ R+R+ QA+LPLRGKILNV  +  +KI 
Sbjct: 287 LPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRDRAYQAILPLRGKILNVEKSRLDKIL 346

Query: 509 NNQQIMDLVQALGCRTRSQY 528
            +++I +++ A GC    ++
Sbjct: 347 KSEEIKNMITAFGCGIGEEF 366


>gi|190148878|gb|ACE63414.1| DNA gyrase B subunit [Pseudonocardia sp. W101]
          Length = 388

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 123/394 (31%), Positives = 200/394 (50%), Gaps = 20/394 (5%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS  L V +  +  ++ Q ++  +P    +   +   K GT +TF  DP 
Sbjct: 1   HGVGVSVVNALSTALDVEIHTEGKVWRQHYAHSVPGPLRK--GEDTTKTGTTVTFWADPD 58

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG----------IPEKEEFY 264
           IF     ++   + +  Q  A+L+  +      ++                   ++  F 
Sbjct: 59  IFETTT-YNIETIRRRLQEMAFLNKGLTIVLRDERNGHPAEEEEPDAEGYVAKVKEYTFC 117

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           +P GL+ ++    +++  I  ++ +   E  G     VE A+ W       + ++ NTI 
Sbjct: 118 YPNGLEDFVAHLNKSKDPIHKKLLSYTGEGDGH---AVEVAMQWNSGYTESVYTFANTIN 174

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G R ALT  + +YA   +    +  ++  DD+      I+SV ++EP+F G
Sbjct: 175 THEGGTHEEGFRSALTTTVNRYAREKKLLKDKEPALSGDDIREGLAAIVSVKVKEPQFEG 234

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440
           QTKTKL + + +  V+    +    +  +NP EA  ++   +  ++ R+  RK RE V R
Sbjct: 235 QTKTKLGNTEVKSFVQRVSNEWLADWFERNPTEAKTIVNKAVSSAQARIAARKARELVRR 294

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LP+RGKI+NV 
Sbjct: 295 KSAGDIGGLPGKLADCRSTDPSKSEVYIVEGDSAGGSAKSGRDSMYQAILPIRGKIINVE 354

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534
            A  +++  N ++  ++ ALG     ++    LR
Sbjct: 355 KARLDRVLKNTEVQSIITALGTGIHDEFDLSKLR 388


>gi|93277220|gb|ABF06428.1| gyrase B [Amycolatopsis sp. C16]
          Length = 377

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 128/378 (33%), Positives = 200/378 (52%), Gaps = 17/378 (4%)

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS ++ V V      ++Q +  G+P +PL K E +  + GT +TF  DP+IF   
Sbjct: 1   SVVNALSSKVSVEVRTDGHRWTQDYKMGVPTAPLAKHEAI-ERTGTSVTFWADPEIFETT 59

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA-----------EKYGIPEKEEFYFPGG 268
             +    L +  Q  A+L+  +    + ++E A           ++    +   +++ GG
Sbjct: 60  -EYSFETLSRRFQEMAFLNKGLTLRLTDERESAKATSGADEAGADEKAEVKSVTYHYEGG 118

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEG 327
           +  +++     +  +          +      ++E A+ W     E + S+ N I T EG
Sbjct: 119 IVDFVKYLNSRKGDVVHPTVIDLEAEDKDKSLSLEVAMQWNSGYSEGVYSFANIIHTHEG 178

Query: 328 GTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTHE G R ALT  I KYA   +   ++  ++  DD+      I+SV + EP+F GQTKT
Sbjct: 179 GTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISVKLSEPQFEGQTKT 238

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI- 444
           KL + +A+  V+ A+ +  + +L +NP+EA  ++   I+ +  R+  RK R++ R+  + 
Sbjct: 239 KLGNTEAKTFVQRAVYEHLNDWLDRNPVEAADIIRKGIQAATARVAARKARDLTRRKGLL 298

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV  A  
Sbjct: 299 ESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEKARI 358

Query: 505 EKIRNNQQIMDLVQALGC 522
           +KI  NQ+I  L+ A G 
Sbjct: 359 DKILQNQEIQALISAFGT 376


>gi|269799064|gb|ACZ43810.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 329

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 103/312 (33%), Positives = 170/312 (54%), Gaps = 15/312 (4%)

Query: 117 PVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQ 176
           PV+ H +    S  E+ILT LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L +T+ R 
Sbjct: 1   PVDIHEE-EGVSAAEVILTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELTIFRH 59

Query: 177 NTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAY 236
             I +Q +  G+P  P+ +   V +  GT + F P  + F +   F    L K  +  ++
Sbjct: 60  GKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFWPSHETFTNTL-FHYDILAKRLRELSF 117

Query: 237 LSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG 296
           L+  V      ++E        + + F + GG+K ++     N++ I+ + F    E++ 
Sbjct: 118 LNSGVSIKLIDERED------GKSDHFVYEGGIKAFVDYLNVNKTPINKDAFHFSAERED 171

Query: 297 THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE---LTQNK 352
               TVE A+ W +     I  + N I   +GGTH +G R ALTR +  Y E     +  
Sbjct: 172 --GITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMEKEGFLKKA 229

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
           ++ +   DD       ++SV + +P+F+ QTK KLVS + +  VE A+ +    YL++NP
Sbjct: 230 KSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQAMGEKLAEYLLENP 289

Query: 413 IEATKLLEWVIE 424
            EA+ ++  +I+
Sbjct: 290 KEASTVVTKIID 301


>gi|109452320|dbj|BAE96357.1| DNA gyrase subunit B [Actinobacillus ureae]
          Length = 365

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 137/376 (36%), Positives = 210/376 (55%), Gaps = 17/376 (4%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS +L +T+ R+  ++ Q +S G P +PL       +K GT + F P
Sbjct: 1   GGLHGVGVSVVNALSSKLQLTIRREGHVYEQFYSLGEPDAPLTIIGDT-DKTGTMVRFWP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
              IF +K  F+   L K  +  ++L+  V      +++  E       E F + GG+K 
Sbjct: 60  SLDIFKNKTEFEYKILSKRLRELSFLNSGVSIRLVDERDGKE-------EHFKYEGGIKA 112

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           Y++   E ++ I +  F   TEK G     VE ++ W +     +  + N I   +GG+H
Sbjct: 113 YVEYLNEGKTHIHNTPFYLSTEKDGI---GVEVSLQWNDSYNENVYCFTNNIPQRDGGSH 169

Query: 331 ESGLRVALTRGIKKYAELTQNKR----AISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
            +G R ALTR +K Y   +   +     I    DD     V ++SV + +P+F+ QTK K
Sbjct: 170 LAGFRGALTRALKNYIGNSGVVKKADANIDASGDDAREGLVAVISVKVPDPKFSSQTKDK 229

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIR 445
           LVS + +  VE+++ +    YL +NP +A  ++  +I+ +  R   RK R    RK A+ 
Sbjct: 230 LVSSEVRGAVESSMNEALAEYLAENPDDAKNIVTKIIDAARAREAARKAREMTRRKGALD 289

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              L GKLADC +     +EL++VEGDSAGGSAKQ ++R NQA+LPL+GKILNV  A  +
Sbjct: 290 LGGLLGKLADCQEKDPALSELYLVEGDSAGGSAKQGQDRKNQAILPLKGKILNVEKARFD 349

Query: 506 KIRNNQQIMDLVQALG 521
           K+ ++Q++  L+ ALG
Sbjct: 350 KMLSSQEVATLITALG 365


>gi|62085670|gb|AAX63227.1| DNA gyrase subunit B [Gordonia alkanivorans]
          Length = 409

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 129/412 (31%), Positives = 202/412 (49%), Gaps = 38/412 (9%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVGISVVNALS ++ + +AR    ++Q +S   P +   ++     K GT + F
Sbjct: 2   VSGGLHGVGISVVNALSTKVELEIARDGHNWTQTYSYAKPGAL--EQGDATRKTGTTVRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-------------------- 249
            PDP IF +   F+A  + +  Q  A+L+  +    +  +                    
Sbjct: 60  WPDPDIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEPPGDPNGDEDAPTTD 119

Query: 250 ---------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
                    E A+    P+   +++P GL  Y++     +  I + +     + +G    
Sbjct: 120 VAEVVLSETEKAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGFSAKGEGH--- 176

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISI 357
            VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++   +
Sbjct: 177 EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLIKEKDGKL 236

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      ++S  + +P+F GQTKTKL + + +  V+    +   H+   NP EA  
Sbjct: 237 TGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEANPAEAKI 296

Query: 418 LLEWVIER-SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           +++   +        RR +  V RKTA     LPGKLADC  N     E++IVEGDSAGG
Sbjct: 297 IIKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSAGG 356

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528
           SAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++
Sbjct: 357 SAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEF 408


>gi|110624479|dbj|BAE98186.1| DNA gyrase B subunit [Shewanella algidipiscicola]
          Length = 368

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 131/378 (34%), Positives = 202/378 (53%), Gaps = 15/378 (3%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS++L +T+ R   ++ Q ++ G+P +P+    +     GT I F P  + 
Sbjct: 1   GVGVSVVNALSEKLQMTIRRDGKVYEQFYTHGVPDAPISVVGEAA-TTGTEIRFWPSNET 59

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F D   F    L K  +  ++L+  V      +++  +       E F + GG+  ++  
Sbjct: 60  FTDV-EFHFDILAKRVRELSFLNSGVGIRLVDERDNRD-------EFFKYEGGISAFVDY 111

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              N++ ++ E+F    E+      TVE A+ W +     I  + N I   +GGTH +G 
Sbjct: 112 LNVNKTPVNKEVFHFIQERDD--GITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGF 169

Query: 335 RVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y +      K   S   DD       ++SV + +P+F+ QTK KLVS + 
Sbjct: 170 RSALTRNLNAYMDREGFNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEV 229

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451
           +  VE  + +    YL+++P EA  ++  +I+ +  R   RK R    RK A+    LPG
Sbjct: 230 KTAVEQTMGEQLSDYLMEHPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPG 289

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q
Sbjct: 290 KLADCQEKDPALSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 349

Query: 512 QIMDLVQALGCRTRSQYR 529
           ++  L+ ALGC       
Sbjct: 350 EVATLITALGCGIGRDEY 367


>gi|209863327|gb|ACI88763.1| DNA gyrase subunit B [Aeromonas sp. JH124]
          Length = 365

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 135/377 (35%), Positives = 206/377 (54%), Gaps = 16/377 (4%)

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P IF
Sbjct: 1   VGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIF 59

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            D   F    L K  +  ++L+  V      +++  E         F + GG+K +++  
Sbjct: 60  SDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYL 111

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G R
Sbjct: 112 NQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFR 168

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS + +
Sbjct: 169 TALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVK 228

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
             VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGK
Sbjct: 229 TAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGK 288

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q+
Sbjct: 289 LADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQE 348

Query: 513 IMDLVQALGCRTRSQYR 529
           +  L+ ALGC       
Sbjct: 349 VGTLITALGCGIGRDEY 365


>gi|329112164|emb|CCA63117.1| DNA gyrase subunit B [Bacillus cereus ATCC 14579]
          Length = 354

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 131/365 (35%), Positives = 197/365 (53%), Gaps = 15/365 (4%)

Query: 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN 177
           V    K   +  +E+I+T LHAGGKF    Y++SGGLHGVG SVVNALS EL V V R+ 
Sbjct: 1   VGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTELEVFVHREG 59

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            I  QK+ RGIP++ L+      ++ GT   F+PDP+IF +   +D   L    +  A+L
Sbjct: 60  KIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETTVYDFDTLATRMRELAFL 118

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +K      +E  +K      +EF++ GG+K+Y++    ++  I  E    +  K G 
Sbjct: 119 NRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGI 172

Query: 298 HRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI- 355
               VE ++ + E       S+ N I T EGGTHE G + ALTR I  Y       +   
Sbjct: 173 Q---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDAD 229

Query: 356 -SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
            ++  +D+      I+S+    P+F GQTKTKL + +A+   E+   + F+ +L++NP  
Sbjct: 230 SNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNV 289

Query: 415 ATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A K++E   +        ++ +    RK+A+    LPGKLADCS      +E++IVEGDS
Sbjct: 290 ARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDS 349

Query: 474 AGGSA 478
           AGGSA
Sbjct: 350 AGGSA 354


>gi|226528042|dbj|BAH56563.1| DNA gyrase subunit B [Pseudomonas sp. HT-3]
          Length = 376

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 137/386 (35%), Positives = 207/386 (53%), Gaps = 17/386 (4%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS EL +T+ R   I+ Q +  G+P +PL       +  GT+I F+P
Sbjct: 1   GGLHGVGVSVVNALSKELVLTIRRSGKIWEQTYVHGVPQAPLAAVGDT-DGTGTQIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++         ++E F + GGLK 
Sbjct: 60  SEETFANIH-FSWDILAKRLRELSFLNSGVGILLRDER-------TGKEELFKYEGGLKA 111

Query: 272 YLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
           +++    N+++++       + E+ G     VE A+ W +     +  + N I   +GGT
Sbjct: 112 FVEYLNTNKTVVNQVFHFNVQREEDGV---GVEVALQWNDSFNENLLCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R ALTR +  Y E     +        DD       I+SV + +P+F+ QTK KL
Sbjct: 169 HLAGFRSALTRHLNNYIESEGLAKKFKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRK 446
           VS + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+  
Sbjct: 229 VSSEVKTAVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDI 288

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  ++
Sbjct: 289 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVERARFDR 348

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED 532
           + ++Q++  L+ ALGC    +    D
Sbjct: 349 MISSQEVGTLITALGCGIGREEYNID 374


>gi|207107894|dbj|BAG71959.1| DNA gyrase subunit B [Gordonia bronchialis DSM 43247]
          Length = 408

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 128/414 (30%), Positives = 199/414 (48%), Gaps = 37/414 (8%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           GISVVNALS ++ + +      + Q +    P    +       K GT + F PDP+IF 
Sbjct: 1   GISVVNALSTKVELEINYGGFHWEQTYDHAKPQPLEK--GDATRKTGTLVRFWPDPEIFE 58

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------------------------E 250
               F A  + +  Q  A+L+  +    +  +                           E
Sbjct: 59  TTV-FSAETVARRLQEMAFLNKGLTITLTDKRPRAVEAPPGDANGDESVADAAETVKTEE 117

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             +    P+   +++P GL  Y++     +  I + +     +  G     VE A+ W  
Sbjct: 118 EKKADAKPKTRTYHYPDGLVDYIKHLNRTKQPIHNSVIGFTAKGTGH---EVEIAMQWNA 174

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                + ++ NTI T EGGTHE G R ALT  + KYA   +   ++   +  DD+     
Sbjct: 175 GYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLLKEKDGKLTGDDIREGLA 234

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP EA  +++  ++ S+
Sbjct: 235 AVISVKVGDPQFEGQTKTKLGNTEVKGFVQKTCNEHLAHWFESNPAEAKIIIKKAVDSSQ 294

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            RL  RK RE V RKTA     LPGKLADC  N     E++IVEGDSAGGSAK  R+   
Sbjct: 295 ARLAARKARELVRRKTATDIGGLPGKLADCRSNDPSKCEVYIVEGDSAGGSAKSGRDSMY 354

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 QAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDIAKLRYHKIVL 408


>gi|71833776|emb|CAI94327.1| gyrase B [Helicobacter canadensis]
          Length = 366

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 137/379 (36%), Positives = 203/379 (53%), Gaps = 16/379 (4%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVGISVVNALS  L +T+ +   I+ Q F++GIP   L    + ++  GT I F PD
Sbjct: 1   GLHGVGISVVNALSKSLQMTIHKNGKIYRQNFAQGIPQDELNIIGECKD-NGTIIEFIPD 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
             IF     F    L K  +  AYL+ +V   +  +++          E ++F GGL  +
Sbjct: 60  DSIFE-ITEFQREILSKRFKELAYLNKQVTIHFKDERD-------GFNEIYHFEGGLNQF 111

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHES 332
           +    + + LIS+ I    TE     +  + +   + E+   + S+ N I T +GGTHES
Sbjct: 112 VNDLNK-KPLISTIINFEGTENDVEIQIALAYNEGFEEK---VLSFVNNIRTIDGGTHES 167

Query: 333 GLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R+ LTR I  Y E   N  ++   I  +D+    V I+SV + +P+F GQTK KL S 
Sbjct: 168 GFRMGLTRVITNYIEANANAREKDSKITGEDIREGLVAIVSVKVIDPQFEGQTKGKLGSA 227

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
             +  V+    +    +  +NP EA  +++  +  +  R   +K RE   +K       L
Sbjct: 228 FVRPIVQKLTYEKLAKFFEENPNEAKAIMQKALLAARGREAAKKARELTRKKETFSVGTL 287

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC       +E+++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  +  +KI  
Sbjct: 288 PGKLADCQSKDPSISEIYLVEGDSAGGSAKQGRDRVYQAILPLRGKILNVEKSRLDKILK 347

Query: 510 NQQIMDLVQALGCRTRSQY 528
           +++I +L+ ALGC     +
Sbjct: 348 SEEIKNLITALGCGIGEDF 366


>gi|324962636|gb|ADY62420.1| gyrase subunit B [Frankia sp. BMG5.23]
          Length = 360

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 102/335 (30%), Positives = 159/335 (47%), Gaps = 21/335 (6%)

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G + V DNGRGIPV  HP    +  +E++LTTLHAGGKFD  +Y +SGGLHGVG+
Sbjct: 1   TLLADGGVRVTDNGRGIPVGMHP-TEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHGVGV 59

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS  L V +     ++ Q +    P  PL K    R    + +TF  DP IF   
Sbjct: 60  SVVNALSTRLDVEIHLDGHVWFQPYVATRPDKPLAKTGTTRRTGTS-VTFWADPTIFET- 117

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             +    L +  Q  A+L+  +      +++            + +  GL  ++      
Sbjct: 118 TEYKYETLSRRLQEMAFLNKGLSITLVDERDEERVAVT-----YKYANGLVDFVGHLNAT 172

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  I   + + +++  G      E A+ W       + ++ NTI T EGGTHE G R AL
Sbjct: 173 KDTIHRSVISLESKGVGI---EAELAMQWNGGYTESVYTFANTINTHEGGTHEEGFRAAL 229

Query: 339 TRGIKKYAELTQNKRAISI---------ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           T  +  YA+     + +             DD+      I+SV + +P+F GQTKTKL +
Sbjct: 230 TSAVNAYAKDQNLLKPVKAGAKNSDERLSGDDIREDLTAIISVKLAQPQFEGQTKTKLGN 289

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            +A++ V+         +   N  EA  ++   ++
Sbjct: 290 TEAKKFVQEMCYSALKDWFEVNRTEARAIVSKALD 324


>gi|15530000|gb|AAG01693.3| DNA gyrase subunit B [Aeromonas jandaei]
          Length = 371

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 137/382 (35%), Positives = 206/382 (53%), Gaps = 16/382 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   + GT   G
Sbjct: 112 YLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQXGVYCFTNNIPKRDXGTQPGG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR    Y E      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 169 FRTALTRTFNFYMEKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 229 VKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 348

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 349 QEVGTLITALGCGIGRDEYNPD 370


>gi|294963288|gb|ADF50131.1| DNA gyrase subunit B [Bacillus thuringiensis]
          Length = 353

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 126/363 (34%), Positives = 196/363 (53%), Gaps = 14/363 (3%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS EL V V R   I  QK+ RGIP++ L+      +K GT   F+PDP+IF +   ++
Sbjct: 1   ALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETTEYE 59

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L    +  A+L+  +K      +E  +K      +EF++ GG+K+Y++    ++  I
Sbjct: 60  FDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSKQPI 113

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGI 342
             E    +  K G     VE A+ + E       S+ N I T EGGTHE G + ALTR I
Sbjct: 114 HEEPVYVEGSKGGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVI 170

Query: 343 KKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             Y       +    ++  +D+      I+S+    P+F GQTKTKL + +A+   E+  
Sbjct: 171 NDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVF 230

Query: 401 RDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
            + F+ +L++NP  A K+++   +        ++ +    RK+A+    LPGKLADCS  
Sbjct: 231 SEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSK 290

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
               +E++IVEGDSAGGSAKQ R+R  QA+LPL+GKI+NV  A  +KI +N ++  ++ A
Sbjct: 291 DPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITA 350

Query: 520 LGC 522
           +G 
Sbjct: 351 IGT 353


>gi|83758692|dbj|BAE54517.1| DNA gyrase subunit B [Rhodococcus sp. TKN46]
          Length = 395

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 125/400 (31%), Positives = 197/400 (49%), Gaps = 37/400 (9%)

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVGISVVNALS  L V + R    ++Q ++   P   ++   +   + GT +TF  DP
Sbjct: 1   LHGVGISVVNALSTRLDVDIKRDGFQWNQTYTDSKPGELVK--GEATKETGTTVTFWADP 58

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP--------------- 258
            IF     +    + +  Q  A+L+  +    + ++    +                   
Sbjct: 59  NIFETTV-YSFETVARRLQEMAFLNKGLTITLTDERVSDAEVTEEVVSQVADAPKTAEDE 117

Query: 259 ------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
                       +   +++PGGL+ Y++     +  I + +     +  G     +E A+
Sbjct: 118 SAEADAPAVHKVKTRVYHYPGGLEDYVRHINRTKQPIHNSVVGFTAKGTGH---ELEIAM 174

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++   +  DD+ 
Sbjct: 175 QWNSGYSESVHTFANTINTHEGGTHEEGFRSALTATVNKYALDKKLLKEKDPKLTGDDIR 234

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  ++   +
Sbjct: 235 EGLAAIISVKVGEPQFEGQTKTKLGNTEVRSFVQKASNEHLSHWFEANPADAKTIVNKAV 294

Query: 424 ERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
             ++ R+  RK RE V RK+A     LPGKLADC  N    +E++IVEGDSAGGSAK  R
Sbjct: 295 SSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPSKSEIYIVEGDSAGGSAKSGR 354

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           +   QA+LPLRGKI+NV  A  +++  N ++  ++ A G 
Sbjct: 355 DSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGT 394


>gi|294963290|gb|ADF50132.1| DNA gyrase subunit B [Bacillus atrophaeus]
          Length = 356

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 131/364 (35%), Positives = 198/364 (54%), Gaps = 13/364 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L VTV R   I  Q + RG+P++ +E   +  +  GT   F PDP+IF +   +
Sbjct: 1   NALSTTLDVTVHRDGKIHYQAYERGVPMADVEVIGET-DTTGTITHFVPDPEIFTETTVY 59

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L    +  A+L+  VK      +E  E+        + + GG+K+Y++    ++ +
Sbjct: 60  DYDLLSSRVRELAFLTKGVKITIEDKREEKEQKNE-----YCYEGGIKSYVEYLNRSKEV 114

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +  E    +  K G    TVE A+ + +     I S+ N I T EGGTHE+G +  LTR 
Sbjct: 115 VHEEPIYIEGTKDGI---TVEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGLTRV 171

Query: 342 IKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  YA      +    ++  DD+      I+S+   +P+F GQTKTKL + +A+   +  
Sbjct: 172 INDYARKKGIFKESDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDAL 231

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
             +  + +L +NP  A K+++  +  +  R+  +K RE   RK+A+    LPGKLADCS 
Sbjct: 232 FSEALETFLFENPDSARKVIDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSS 291

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  ++ 
Sbjct: 292 KDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMIT 351

Query: 519 ALGC 522
           ALG 
Sbjct: 352 ALGT 355


>gi|83758688|dbj|BAE54515.1| DNA gyrase subunit B [Rhodococcus sp. TKN14]
          Length = 394

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 125/400 (31%), Positives = 197/400 (49%), Gaps = 37/400 (9%)

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVGISVVNALS  L V + R    ++Q ++   P   ++   +   + GT +TF  DP
Sbjct: 1   LHGVGISVVNALSTRLDVDIKRDGFQWNQTYTDSKPGELVK--GEATKETGTTVTFWADP 58

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP--------------- 258
            IF     +    + +  Q  A+L+  +    + ++    +                   
Sbjct: 59  NIFETTV-YSFETVARRLQEMAFLNKGLTITLTDERVSDAEVTEEVVSQVADAPKTAEDE 117

Query: 259 ------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
                       +   +++PGGL+ Y++     +  I + +     +  G     +E A+
Sbjct: 118 SAEADAPAVHKVKTRVYHYPGGLEDYVRHINRTKQPIHNSVVGFTAKGTGH---ELEIAM 174

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++   +  DD+ 
Sbjct: 175 QWNSGYSESVHTFANTINTHEGGTHEEGFRSALTATVNKYALDKKLLKEKDPKLTGDDIR 234

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  ++   +
Sbjct: 235 EGLAAIISVKVGEPQFEGQTKTKLGNTEVRSFVQKASNEHLSHWFEANPADAKTIVNKAV 294

Query: 424 ERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
             ++ R+  RK RE V RK+A     LPGKLADC  N    +E++IVEGDSAGGSAK  R
Sbjct: 295 SSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPSKSEIYIVEGDSAGGSAKSGR 354

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           +   QA+LPLRGKI+NV  A  +++  N ++  ++ A G 
Sbjct: 355 DSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGT 394


>gi|207107898|dbj|BAG71961.1| DNA gyrase subunit B [Gordonia effusa]
          Length = 409

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 127/415 (30%), Positives = 204/415 (49%), Gaps = 38/415 (9%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           GISVVNALS  + +++      + Q +   +P    +       K GT ++F PD +IF 
Sbjct: 1   GISVVNALSTRVELSIDYGGFHWDQTYHNAVPDPLEK--GAATRKTGTTVSFWPDSEIFE 58

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------------------------- 249
               F+A  + +  Q  A+L+  +    + ++                            
Sbjct: 59  TTT-FNAETVARRLQEMAFLNKGLTITLTDERLTDEAAEAEAEMGGTDGEQTAEAIANKE 117

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
           E A++    +   +++P GL  Y++     ++ I S +     +  G     VE A+ W 
Sbjct: 118 EKADRVAKIKTRTYHYPDGLVDYIKHLNRTKNAIHSSVVGFTGKGTGH---EVEIAMQWN 174

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISA 366
                 + ++ NTI T EGGTHE G R ALT  + KYA   +   ++   +  DD+    
Sbjct: 175 NGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYAADKKLVKEKDGKLTGDDIREGL 234

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP EA  ++   ++ +
Sbjct: 235 AAVISVKVGDPQFEGQTKTKLGNTEVKSFVQKMCNEHLAHWFESNPAEAKVIIRKAVDSA 294

Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
           + R+  RK RE V RKTA     LPGKLADC  N     E++IVEGDSAGGSAK  R+  
Sbjct: 295 QARMAARKARELVRRKTATDIGGLPGKLADCRSNDPSKCEVYIVEGDSAGGSAKSGRDSM 354

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++  E LRY K+++
Sbjct: 355 YQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDIEKLRYHKIVL 409


>gi|294963336|gb|ADF50155.1| DNA gyrase subunit B [Bacillus atrophaeus]
          Length = 356

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 131/364 (35%), Positives = 198/364 (54%), Gaps = 13/364 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L VTV R   I  Q + RG+P++ +E   +  +  GT   F PDP+IF +   +
Sbjct: 1   NALSTTLDVTVHRDGKIHYQAYERGVPMADVEVIGET-DTTGTITHFVPDPEIFTETTVY 59

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L    +  A+L+  VK      +E  E+        + + GG+K+Y++    ++ +
Sbjct: 60  DYDLLSSRVRELAFLTKGVKITIEDKREEKEQKNE-----YCYEGGIKSYVEYLNRSKEV 114

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +  E    +  K G    TVE A+ + +     I S+ N I T EGGTHE+G +  LTR 
Sbjct: 115 VHEEPIYIEGTKDGI---TVEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGLTRV 171

Query: 342 IKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  YA      +    ++  DD+      I+S+   +P+F GQTKTKL + +A+   +  
Sbjct: 172 INDYARKKGIFKESDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDAL 231

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
             +  + +L +NP  A K+++  +  +  R+  +K RE   RK+A+    LPGKLADCS 
Sbjct: 232 FSEALETFLFENPDSARKVIDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSS 291

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  ++ 
Sbjct: 292 KDPGISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMIT 351

Query: 519 ALGC 522
           ALG 
Sbjct: 352 ALGT 355


>gi|45128541|gb|AAS55054.1| GyrB [Vibrio parahaemolyticus]
 gi|45128565|gb|AAS55056.1| GyrB [Vibrio parahaemolyticus]
          Length = 374

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 137/384 (35%), Positives = 211/384 (54%), Gaps = 15/384 (3%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K GT+I F P  + F 
Sbjct: 1   GVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKTGTQIRFWPSAETFS 59

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++E        +++ F + GG++ ++Q   
Sbjct: 60  NT-EFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KQDHFMYEGGIQAFVQHLN 112

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ I  +IF    E++     +VE A+ W +     I  + N I   +GGTH +G R 
Sbjct: 113 TNKTPIIEKIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRA 170

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + + 
Sbjct: 171 ALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKS 230

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE+A+ +    +LV+NP EA  +   +I+ +  R   RK R    RK A+    LPGKL
Sbjct: 231 AVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKL 290

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 291 ADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 350

Query: 514 MDLVQALGCRT-RSQYREEDLRYE 536
             L+ ALGC   R +Y  + LRY 
Sbjct: 351 ATLITALGCGIGRDEYNPDKLRYH 374


>gi|197295754|gb|ACH58588.1| gyrase subunit B [Methylobacterium organophilum]
          Length = 382

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 133/375 (35%), Positives = 201/375 (53%), Gaps = 15/375 (4%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS  L + + R +   + +F  G  ++PLE       +RGT +TF P  + 
Sbjct: 1   GVGVSVVNALSSWLRLRIWRNDKEHAMEFRHGDAVAPLEVIGPGNGRRGTEVTFLPSTET 60

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     FD A L K  +  A+L+  V+   +  +   +K      EE Y+ GG++ +++ 
Sbjct: 61  FT-MIEFDYATLEKRLRELAFLNSGVRIVLTDARHAEKKR-----EELYYEGGIEAFVRY 114

Query: 276 KLENRSLIS--SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
              +R  I   +      +E+ G     VE A  W +     +  + N I   +GGTH +
Sbjct: 115 LDRSRKPIDGMTSPVVVSSERDGI---RVEVAFWWNDSFNETVLPFTNNIPQRDGGTHMA 171

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR +  YAE +    K  +S+  +D       ++SV + +P+F+ QTK KLVS 
Sbjct: 172 GFRAALTRQVTGYAESSGIAKKEKVSLTGEDCREGLTAVISVQVPDPKFSSQTKDKLVSS 231

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRL 449
           + +  VEN L +    +L +NP +A  ++  V+  +  R   RK RE   RK A+    L
Sbjct: 232 EVRPAVENVLNEGLSTWLEENPSQARSVMGKVVLAASAREAARKARETVTRKGALDIASL 291

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +      E+ +VEGDSAGGSAKQ R+R+ QAVLPLRGKILNV    ++++ +
Sbjct: 292 PGKLADCQERDPTKCEILLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERVRADRMLS 351

Query: 510 NQQIMDLVQALGCRT 524
           + +I  L+ ALG   
Sbjct: 352 SAEIGTLITALGAGI 366


>gi|327200339|gb|AEA36049.1| DNA gyrase subunit B [Agrobacterium larrymoorei]
          Length = 358

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 130/367 (35%), Positives = 196/367 (53%), Gaps = 13/367 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  L + + R   +    FS G+   PLE       + GT +TF
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLRIRRNGKVHEIGFSHGVADKPLEVIGDYEGRSGTEVTF 60

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
              P  F     ++ A L    +  A+L+  V+   +  +    K     +EE  + GGL
Sbjct: 61  LASPDTF-TMTEYNYATLEHRLRELAFLNSGVRILLTDKRHSDIK-----QEEMVYDGGL 114

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328
           + +++     +  +  +    + EK G    TVE A+ W +   E    + N I   +GG
Sbjct: 115 EAFVRYLDRAKKPLVDKPVAIRGEKDGI---TVEVAMWWNDSYHENVLCFTNNIPQRDGG 171

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  YA+ +    K  +S+  +D       +LSV + +P+F+ QTK K
Sbjct: 172 THMAGFRGALTRQVTSYADSSGITKKEKVSLQGEDCREGLTAVLSVKVPDPKFSSQTKDK 231

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIR 445
           LVS + +  VEN + +  + +  ++P EA  L+ + V         R+ +    RK A+ 
Sbjct: 232 LVSSEVRPVVENLVNEALNTWFEEHPTEAKILVGKVVEAAVAREAARKARELTRRKGALD 291

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS+     +E+F+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +
Sbjct: 292 IASLPGKLADCSERDPAKSEVFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFD 351

Query: 506 KIRNNQQ 512
           K+ ++Q+
Sbjct: 352 KMLSSQE 358


>gi|307592560|gb|ADN65368.1| DNA gyrase subunit B [Chryseobacterium soli]
          Length = 224

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 91/221 (41%), Positives = 146/221 (66%), Gaps = 7/221 (3%)

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNI 460
           +   ++L +NP EA  +++ V+  ++ R   +K RE+ ++ + +    LPGKL+DCS   
Sbjct: 5   EMLTNFLEENPNEAKIIVQKVVLAAKARQAAKKAREMVQRKSPMGGSGLPGKLSDCSSKS 64

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +ELF+VEGDSAGG+AKQ R+R  QA+LPLRGKILNV  +   K+ +N++I ++  AL
Sbjct: 65  PEESELFLVEGDSAGGTAKQGRDRHFQAILPLRGKILNVEKSMLHKVYDNEEIKNIYTAL 124

Query: 521 GCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           G    ++          LRY KV+IMTDAD+DG+HI++L+LTFF++ M +LIE  ++++ 
Sbjct: 125 GVSVGTEEDSKALNMAKLRYHKVVIMTDADIDGSHISTLILTFFFRFMKELIENGYIYIA 184

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616
            PPL+ + +G K VYA++E+ +++   E    GKG +E+ R
Sbjct: 185 QPPLYLLKKGNKKVYAYNEKEREQFTLELSPDGKG-VEVQR 224


>gi|302122544|gb|ADK92940.1| DNA gyrase subunit B [Geobacillus sp. 46]
          Length = 347

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 126/355 (35%), Positives = 194/355 (54%), Gaps = 14/355 (3%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS+ L V V R   I  QK+ RG P + L+   +  ++ GT   F+PDP+IF +   FD
Sbjct: 2   ALSEWLEVYVYRDGKIHYQKYERGQPCTDLQVIGET-DRTGTTTRFKPDPEIFTETTEFD 60

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L    +  A+L+  +K   + ++    K       E+++ GG+++Y++     R ++
Sbjct: 61  YETLAARLRELAFLNRGLKITLTDERVDNRK------SEYFYEGGIRSYVRHLNRTREVL 114

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
             E      E+ G     VE A+ + +     I S+ N I T EGGTHESG ++ALTR I
Sbjct: 115 HEEPIYIAGERDGI---AVEIALQYNDGYTSNIYSFVNNIHTHEGGTHESGFKMALTRII 171

Query: 343 KKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             YA   Q  +    ++  +D+      I+S+    P+F GQTKTKL + DA+   +   
Sbjct: 172 NDYARKQQIFKDNDANLTGEDVREGLTAIVSIKHPSPQFEGQTKTKLGNSDARTVTDAVF 231

Query: 401 RDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
            + F+ +L+++P  A K++E  ++        ++ +    RK+A+    LPGKLADCS  
Sbjct: 232 SEQFETFLLEHPTIARKIVEKGMMAARARLAAKKARELTRRKSALEVSNLPGKLADCSSR 291

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
               +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++ 
Sbjct: 292 DPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARIDKILSNNEVR 346


>gi|330896945|gb|AEC48373.1| gyrase B [Streptomyces humidus]
          Length = 392

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 126/394 (31%), Positives = 199/394 (50%), Gaps = 17/394 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS  + V V      ++Q++  G+P +PL++ E      GT +TF  D  
Sbjct: 1   HGVGVSVVNALSTRVAVEVKTDGHRWTQEYKLGVPTAPLQRHEATEE-TGTSVTFWADGD 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI-----------AEKYGIPEKEEF 263
           IF     +    L +  Q  A+L+  ++   + ++E             ++    +   +
Sbjct: 60  IFETT-DYSFETLSRRFQEMAFLNKGLRINLTDERESAKATAGADEAGEDEKHEVKSVSY 118

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           ++ GG+  +++     +  +          +      ++E A+ W       + S+ N I
Sbjct: 119 HYEGGIVDFVKYLNSRKGEVIHPTVIDLEAEDRERHLSLEVAMQWNGGYTEGVYSFANII 178

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  I KYA   +   ++  ++  DD+      I+SV + EP+F 
Sbjct: 179 HTHEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISVKLSEPQFE 238

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
           GQTKTKL + + +  V+  + +    +L +NP EA  ++   I  +  R+  RK R++ R
Sbjct: 239 GQTKTKLGNTEVKTFVQKVVYEHLADWLDRNPNEAADIVRKGIAAATARVAARKARDLTR 298

Query: 441 KTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV
Sbjct: 299 RKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPEYQAILPIRGKILNV 358

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
             A  ++I  NQ+I  ++ A G      +  E L
Sbjct: 359 EKARIDRILQNQEIQAMISAFGTGVHEDFDIEKL 392


>gi|2196816|gb|AAB80825.1| DNA gyrase beta-subunit [Shewanella putrefaciens]
          Length = 419

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 132/417 (31%), Positives = 211/417 (50%), Gaps = 15/417 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T   AG     +T +       VG+ VVNALS +L +T+ R   ++ Q ++ G+P 
Sbjct: 1   EVIMTVPRAGVNSKITTTDAYVDRSRVGVPVVNALSKKLQMTIRRAGKVYEQFYTHGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+++        GT I F P    F D   F    L K  +  ++L+  V      +++
Sbjct: 61  APIKEIGDATK-TGTEIRFWPSEDTFSDV-EFHFEILAKRVRELSFLNSGVGIRLVDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + E F +  G+  ++     N++ ++ ++F    E++     TVE A+ W +
Sbjct: 119 N-------KNEFFKYESGISAFVNYLNRNKTPVNKDVFHFMQERED--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                I  + N I   +GGTH  G R ALTR +  Y E      K   S   DD      
Sbjct: 170 GYQENIFCFTNNIPQRDGGTHLVGFRSALTRNLNSYMENEGYNKKGKTSATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            ++SV + +P+F+ QTK KLVS + +  VE  + +  + YL++NP +A  ++  +++ + 
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEKLNDYLLENPADAKLIVGKIVDAAR 289

Query: 428 ERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK  E+  RK A+    LPGKLADC +     +E++IVEGD AGGSAKQ RNR N
Sbjct: 290 AREAARKACEMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDFAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTD 543
           QA+LPL+GKILNV  A  +K+   Q++  L+ A+GC       +      ++    D
Sbjct: 350 QAILPLKGKILNVEKARFDKMLFFQEVATLITAIGCGIGGSGHDPSAYQGEISSHRD 406


>gi|209863357|gb|ACI88778.1| DNA gyrase subunit B [Aeromonas sp. JH90]
          Length = 366

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 132/377 (35%), Positives = 204/377 (54%), Gaps = 15/377 (3%)

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++     +  GT + F P P I 
Sbjct: 1   VGVSVVNALSDKLXLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSP-II 59

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                +    L K  +   +L+  V      +++  E         F + GG+K +++  
Sbjct: 60  FTDTLYHYEILAKRPRKPPFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVEYL 112

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G R
Sbjct: 113 NQNKTPIHPKVFHFSTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFR 169

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS + +
Sbjct: 170 TALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVK 229

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
             VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGK
Sbjct: 230 TAVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGK 289

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q+
Sbjct: 290 LADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQE 349

Query: 513 IMDLVQALGCRTRSQYR 529
           +  L+ ALGC       
Sbjct: 350 VGTLITALGCGIGRDEY 366


>gi|327200405|gb|AEA36082.1| DNA gyrase subunit B [Rhizobium huautlense]
          Length = 358

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 127/367 (34%), Positives = 197/367 (53%), Gaps = 13/367 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  L + + R   +    F+ G+  +PL+   +   + GT +TF
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLRIRRNGKVHEISFTHGVADAPLKVIGEYEGRSGTEVTF 60

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
              P+ F     +D   L    +  A+L+  V+   +  ++   +      EE  + GGL
Sbjct: 61  LASPQTF-TMTEYDYNTLEHRLRELAFLNSGVRIRLTDKRKPDIRE-----EEMLYDGGL 114

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328
           + +++     +  +  +    K EK G    TVE A+ W +   E    + N I   +GG
Sbjct: 115 EAFVRYLDRAKKPLVEKPVAIKGEKDGI---TVEVAMWWNDSYHENVLCFTNNIPQRDGG 171

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  YA+ +    K  +++  +D       +LSV + +P+F+ QTK K
Sbjct: 172 THMAGFRGALTRQVTSYADTSGITKKEKVTLQGEDCREGLTAVLSVKVPDPKFSSQTKDK 231

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIR 445
           LVS + +  VE+ + +    +  ++P EA  L+ + V         R+ +    RK  + 
Sbjct: 232 LVSSEVRPVVESLVNEALSTWFEEHPTEAKILVGKVVEAAVAREAARKARELTRRKGVLD 291

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS+     +ELF+VEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  +
Sbjct: 292 IASLPGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 351

Query: 506 KIRNNQQ 512
           K+ ++Q+
Sbjct: 352 KMLSSQE 358


>gi|19909587|dbj|BAB86989.1| DNA gyrase subunit B [Brevundimonas subvibrioides ATCC 15264]
          Length = 393

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 135/402 (33%), Positives = 211/402 (52%), Gaps = 20/402 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV----- 199
            ++Y++SGGLHGVG+SVVNALSD L + + R       KF RG  +  L    +      
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSDWLKLVIFRNGQRHEMKFERGDTVESLRVTGEAPMREN 60

Query: 200 -RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
            +   GT++TF P    F     FD   L    +  A+L+  V       +        P
Sbjct: 61  GKVLSGTQVTFYPSVTTFA-HIDFDLKTLEHRLRELAFLNSGVVIKLQDHR-----GVEP 114

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
            +E  ++ GG++ +++   ++++ I  ++   + ++       ++ A+ W +     +  
Sbjct: 115 FEEILHYEGGVEAFVRHLDKSKTPILKDVIVIRGKRDNI---EIDLALWWNDSYHETMLC 171

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH S  R +LT+ +  Y E +    K  ++   +D       +LSV + 
Sbjct: 172 FTNNIPQRDGGTHLSAFRTSLTKVMGAYMESSGALKKEKVAPTGEDAREGLTCVLSVKVP 231

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           +P+F+ QTK KLVS + +  VE    D  + +  ++P+EA  ++  +IE +  R   RK 
Sbjct: 232 DPKFSSQTKDKLVSSEVRPAVEGLCTDGLNQWFEEHPVEAKAVVAKIIEAASAREAARKA 291

Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           R+   RK+A+    LPGKLADC +     +ELFIVEGDSAGGSAKQARNR NQAVLPLRG
Sbjct: 292 RDLTRRKSALDISSLPGKLADCQERDPAKSELFIVEGDSAGGSAKQARNRENQAVLPLRG 351

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRY 535
           KILNV  A  +++ +++ I  L+ ALG          + LRY
Sbjct: 352 KILNVERARFDRMLSSELIGTLILALGTGIGRDDFNADKLRY 393


>gi|313640123|gb|EFS04742.1| DNA gyrase, B subunit [Listeria seeligeri FSL S4-171]
          Length = 107

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 46/102 (45%), Positives = 68/102 (66%), Gaps = 1/102 (0%)

Query: 35  FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94
              Q  + +Y+   I++LEGLE VR RPGMYIG T ++ LHHL  E++DNA+DE +AG+ 
Sbjct: 7   TNVQENASDYNEDQIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVWEIVDNAIDEALAGFC 66

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTT 136
             IE++++ +  +TV DNGRGIP   + K   + T+E+I T 
Sbjct: 67  TEIEITIEADNSITVRDNGRGIPTGINEKI-GRPTVEVIFTV 107


>gi|110624475|dbj|BAE98184.1| DNA gyrase B subunit [Shewanella algidipiscicola]
          Length = 368

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 131/378 (34%), Positives = 203/378 (53%), Gaps = 15/378 (3%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS++L +T+ R   ++ Q ++ G+P +P+    +     GT I F P  + 
Sbjct: 1   GVGVSVVNALSEKLQMTIRRDGKVYEQFYTHGVPDAPISVVGEAA-TTGTEIRFWPSNET 59

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F D   F    L K  +  ++L+  V      +++  +       E F + GG+  ++  
Sbjct: 60  FTDV-EFHFDILAKRVRELSFLNSGVGIRLVDERDNRD-------EFFKYEGGISAFVDY 111

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              N++ ++ E+F    E++     TVE A+ W +     I  + N I   +GGTH +G 
Sbjct: 112 LNVNKTPVNKEVFHFIQERED--GITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGF 169

Query: 335 RVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y +      K   S   DD       ++SV + +P+F+ QTK KLVS + 
Sbjct: 170 RSALTRNLNAYMDREGFNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEV 229

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451
           +  VE  + +    YL+++P EA  ++  +I+ +  R   RK R    RK A+    LPG
Sbjct: 230 KTAVEQTMGEQLSDYLMEHPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPG 289

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q
Sbjct: 290 KLADCQEKDPALSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 349

Query: 512 QIMDLVQALGCRTRSQYR 529
           ++  L+ ALGC       
Sbjct: 350 EVATLITALGCGIGRDEY 367


>gi|220680522|dbj|BAH10750.1| DNA gyrase subunit B [Nocardia elegans]
          Length = 398

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 118/404 (29%), Positives = 202/404 (50%), Gaps = 32/404 (7%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  +   + R    +SQ++    P   ++   +  ++ GT   F  DP +F     +
Sbjct: 1   NALSSRMVTEIDRDGFHWSQEYKDAKPGKLVK--GEPTDRTGTTQRFWADPDVFETTT-Y 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDK------------------EIAEKYGIPEKE--- 261
           +   + +  Q  A+L+  +    + ++                  +  E    PE +   
Sbjct: 58  NFETISRRLQEMAFLNKGLTITLTDERVSDAEVTDEVVSETAEAPKHDEGAATPEHKVKT 117

Query: 262 -EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
             +++PGGL+ +++     +  I + + +  ++  G     +E A+ W       + ++ 
Sbjct: 118 RTYHYPGGLEDFVKHINRTKQPIHNTVVSFTSKGTGH---ELEVAMQWNSGYSESVHTFA 174

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           NTI T EGGTHE G R ALT  + KYA+  +   ++  ++  DD+      I+SV + EP
Sbjct: 175 NTINTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLTGDDIREGLAAIVSVKVSEP 234

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F GQTKTKL + + +  V+    +   H+   NP +A  +++  +  ++ R+  RK RE
Sbjct: 235 QFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQKAVSSAQARVAARKARE 294

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
            V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LPLRGKI
Sbjct: 295 LVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKI 354

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +NV  A  +K+  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 INVEKARIDKVLKNNEVQSIITAFGTGIHDEFDISKLRYHKIVL 398


>gi|309800096|ref|ZP_07694289.1| DNA topoisomerase 4 subunit B [Streptococcus infantis SK1302]
 gi|308116263|gb|EFO53746.1| DNA topoisomerase 4 subunit B [Streptococcus infantis SK1302]
          Length = 155

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 54/125 (43%), Positives = 81/125 (64%), Gaps = 6/125 (4%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
           +NY+  +I++LEGL+ VR RPGMYIG TD   LHHL  E++DNA+DE ++G+ + I+V++
Sbjct: 9   NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68

Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
           + +G LTV D+GRG+P   H       T+E+I T LHAG     ++ ++   L  V   +
Sbjct: 69  NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAG----ENSDKVVTRLLVVSTEL 122

Query: 162 VNALS 166
           V  LS
Sbjct: 123 VLLLS 127


>gi|23451170|gb|AAN32690.1| DNA gyrase subunit B [Aeromonas schubertii]
          Length = 371

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 134/382 (35%), Positives = 205/382 (53%), Gaps = 16/382 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD L +T+ RQ  ++ Q +  G P +PL++        GT + F P P 
Sbjct: 1   HGVGVSVVNALSDTLKLTIRRQGHVYEQTYKLGEPQAPLKQIGDAT-TTGTEVRFWPSPT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L K  +  ++L+  V    + +++  E         F + GG+K +++
Sbjct: 60  IFSDTL-FHYEILAKRLRELSFLNSGVSILLTDERDGRE-------VHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              ++++ I  ++F    ++ G     VE A+ W +     +  + N I   +GGTH +G
Sbjct: 112 YLNQSKTPIHQKVFHFSADQDGI---GVEVAMQWNDGYQEGVYCFTNNIPQRDGGTHLAG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R  LTR + KY +      K   S   DD+    V ++S+ + +P+F+ QTK KLVS +
Sbjct: 169 FRAXLTRTLNKYMDKEDYSKKAKTSASGDDVREGLVAVISIKVPDPKFSSQTKDKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLP 450
            +  VE A+ D    +L++NP +A  ++  +I+ +  R   RK R    RK A+    LP
Sbjct: 229 VKTAVEQAMADKLADFLLENPGDAKIVVNKIIDAARAREAARKARXMTRRKGALDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKL DC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A    + ++
Sbjct: 289 GKLXDCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARXXXMISS 348

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ A GC         D
Sbjct: 349 QEVGTLITAXGCGIGRDEYNPD 370


>gi|323364331|gb|ADX42735.1| DNA gyrase subunit B [Bacillus sp. KJW98]
          Length = 356

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 123/365 (33%), Positives = 192/365 (52%), Gaps = 13/365 (3%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS+   VTVAR   ++   F RG+    L    K     GT++ F+ DP+IF +   ++
Sbjct: 1   ALSERTEVTVARDGELYFIAFERGLVAEELRVIGKAEE-TGTQVRFKADPEIFTETTVYE 59

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L    Q  AYL+  ++   + ++          ++ +++ GG+K+Y+Q   E++  I
Sbjct: 60  YDILAHRLQELAYLNRGIRITLTDER-----GEEKRRDAYHYEGGIKSYVQHINEDKEPI 114

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
             E    + E+ G    +VE A+ +       I S+ N I T EGGTHESG + ALTR I
Sbjct: 115 HEEPIFIEGERDGI---SVEVAMQYNAGYASNIFSFANNINTYEGGTHESGFKTALTRVI 171

Query: 343 KKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             YA      +    ++  +D       I+SV   +P+F GQTKTKL + +  + V +  
Sbjct: 172 NDYARKNGLLKDNEANLSGEDAREGLTAIISVKHPDPQFEGQTKTKLGNSEVSQIVNSLF 231

Query: 401 RDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
            D F+ +L++NP  A  ++E  ++        ++ +    RK+ +    LPGKL+DCS  
Sbjct: 232 SDGFERFLLENPTGARMIVEKGLMAARARVAAKKARELTRRKSVLEISNLPGKLSDCSSR 291

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
               +EL+IVEGDSAGGSAK  R+R  QA+LPL+GKILNV  A   +I +N +I  ++ A
Sbjct: 292 DPAISELYIVEGDSAGGSAKNGRDRHFQAILPLKGKILNVEKANINRILSNAEIRAMITA 351

Query: 520 LGCRT 524
           LG   
Sbjct: 352 LGTGI 356


>gi|188037317|gb|ACD46279.1| DNA gyrase subunit B [Providencia rustigianii]
          Length = 271

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 93/282 (32%), Positives = 147/282 (52%), Gaps = 15/282 (5%)

Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179
            H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L + + R   +
Sbjct: 1   IHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKV 59

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
             Q +  G P  PL    +  ++ GTR+ F P    F     F+   L K  +  ++L+ 
Sbjct: 60  HEQIYKHGEPQGPLTVVGET-DQTGTRVRFWPSMDTFKGITEFEYEILAKRLRELSFLNS 118

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            V       ++  E       + F++ GG+K +++    N++ I   +F   TEK G   
Sbjct: 119 GVSIRLIDKRDGKE-------DHFHYDGGIKAFVEYLSRNKTPIHPSVFYFSTEKDGI-- 169

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
             VE A+ W +     +  + N I   +GGTH +G R A+TR +  Y E      K  +S
Sbjct: 170 -GVEVAMQWNDGFQENVYCFTNNIPQRDGGTHLAGFRAAMTRTLNNYMEKEGYQKKTKVS 228

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
              DD     + ++SV + +P+F+ QTK KLVS + +  VE 
Sbjct: 229 ATGDDAREGLIAVISVKVPDPKFSSQTKEKLVSSEVKTAVET 270


>gi|209863339|gb|ACI88769.1| DNA gyrase subunit B [Aeromonas sp. JH64]
          Length = 365

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 134/377 (35%), Positives = 206/377 (54%), Gaps = 16/377 (4%)

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P IF
Sbjct: 1   VGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIF 59

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            D   +    L K  +  ++L+  V      +++  E         F + GG+K +++  
Sbjct: 60  TDTL-YHYEILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYL 111

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G R
Sbjct: 112 NQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFR 168

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS + +
Sbjct: 169 TALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVK 228

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
             VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGK
Sbjct: 229 TAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGK 288

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q+
Sbjct: 289 LADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQE 348

Query: 513 IMDLVQALGCRTRSQYR 529
           +  L+ ALGC       
Sbjct: 349 VGTLITALGCGIGRDEY 365


>gi|2196820|gb|AAB80827.1| DNA gyrase beta-subunit [Shewanella putrefaciens]
          Length = 419

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 131/417 (31%), Positives = 209/417 (50%), Gaps = 15/417 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T   AG     +T +        G+ VVNALS +L +T+ R   ++ Q ++ G+P 
Sbjct: 1   EVIMTVPRAGVNSKINTTDAYVDRSRFGVPVVNALSKKLQMTIRRAGKVYEQFYTHGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+++        GT I F P    F D   F    L K  +  ++L+  V      +++
Sbjct: 61  APIKEIGDATK-TGTEIRFWPSEDTFSDV-EFHFEILAKRVRELSFLNSGVGIRLVDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                     E F + GG+  ++     N++ ++ ++F    E++     TVE A+ W +
Sbjct: 119 NTN-------EFFKYEGGISAFVDYLNRNKTPVNKDVFHFMQERED--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                I  + N I   +GGTH  G R ALTR +  Y E      K   S   DD      
Sbjct: 170 GYQENIFCFTNNIPQRDGGTHLVGFRSALTRNLNSYMENEGYNKKGKTSATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            ++SV + +P+F+ QTK KLVS + +  VE  + +  + YL++NP +A  ++  +++ + 
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEKLNDYLLENPADAKLIVGKIVDAAR 289

Query: 428 ERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK R    RK A+    LPGKLADC +     +E++IVEGD A GSAKQ RNR N
Sbjct: 290 AREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDFACGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTD 543
           QA+LPL+GKILNV  A  +K+  +Q++  L+ A+GC       +      ++    D
Sbjct: 350 QAILPLKGKILNVEKARFDKMLFSQEVATLITAIGCGIGRSCHDRSAYQGEICSHRD 406


>gi|209863337|gb|ACI88768.1| DNA gyrase subunit B [Aeromonas sp. JH63]
          Length = 365

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 134/377 (35%), Positives = 206/377 (54%), Gaps = 16/377 (4%)

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P IF
Sbjct: 1   VGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIF 59

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            D   +    L K  +  ++L+  V      +++  E         F + GG+K +++  
Sbjct: 60  TDTL-YHYEILAKRLRELSFLNSGVSIRLKDERDGRE-------AHFCYEGGIKAFVEYL 111

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G R
Sbjct: 112 NQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFR 168

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS + +
Sbjct: 169 TALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVK 228

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
             VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGK
Sbjct: 229 TAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGK 288

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q+
Sbjct: 289 LADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQE 348

Query: 513 IMDLVQALGCRTRSQYR 529
           +  L+ ALGC       
Sbjct: 349 VGTLITALGCGIGRDEY 365


>gi|327200379|gb|AEA36069.1| DNA gyrase subunit B [Agrobacterium rhizogenes]
          Length = 358

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 135/367 (36%), Positives = 203/367 (55%), Gaps = 13/367 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  L + + RQ  I    F+ G+  +PL+      ++ GT ++F
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLKIRRQGKINEMSFTHGVADAPLKVTGDAGSETGTEVSF 60

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F     FD + L    +  A+L+  V+   +  +          +EE  + GGL
Sbjct: 61  MPSSETF-TMTEFDYSTLEHRLRELAFLNSGVRILLTDKRHSDV-----RQEEMLYDGGL 114

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328
           + +++     +  +  +  + ++EK G    TVE A+ W E   E    + N I   +GG
Sbjct: 115 EAFVKYLDRAKKPLVDKPVSIRSEKDGI---TVEVAMWWNESYHENVLCFTNNIPQRDGG 171

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR I  Y E +   +   +    DD       +LSV + +P+F+ QTK K
Sbjct: 172 THMAGFRGALTRQITSYGESSGITKREKVTLTGDDCREGLTAVLSVKVPDPKFSSQTKDK 231

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           LVS + +  VE+ + +    +L ++P +A  L+  V+E +  R   RK RE   RK A+ 
Sbjct: 232 LVSSEVRPVVESLVNEALGTWLEEHPADAKVLVGKVVEAAAAREAARKARELTRRKGALD 291

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS+     +E+F+VEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  +
Sbjct: 292 IASLPGKLADCSERDPAKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 351

Query: 506 KIRNNQQ 512
           K+ ++Q+
Sbjct: 352 KMLSSQE 358


>gi|188037306|gb|ACD46274.1| DNA gyrase subunit B [Providencia stuartii]
          Length = 270

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 93/282 (32%), Positives = 148/282 (52%), Gaps = 15/282 (5%)

Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179
            H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L +T+ R   +
Sbjct: 1   IHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELTIRRDGKV 59

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
             Q +  G P  PL    +  ++ GTR+ F P    F     F+   L K  +  ++L+ 
Sbjct: 60  HEQTYCHGEPQGPLTVVGET-DQTGTRVRFWPSLDTFKGVTEFEYDVLAKRLRELSFLNS 118

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            V       ++  E       + F++ GG+K +++    N++ I   +F   TEK G   
Sbjct: 119 GVSIRLIDKRDGKE-------DHFHYEGGIKAFVEYLSRNKTPIHPSVFYFSTEKDGI-- 169

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
             VE A+ W +     +  Y N I   +GGTH +G R ++TR +  Y +      K  +S
Sbjct: 170 -GVEIAMQWNDGFQENVYCYTNNIPQRDGGTHLAGFRASMTRTLNNYMDKEGYQKKAKVS 228

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
              DD     + ++SV + +P+F+ QTK KLVS + +  VE 
Sbjct: 229 ATGDDAREGLIAVISVKVPDPKFSSQTKEKLVSSEVKTAVET 270


>gi|211927057|dbj|BAG82781.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 421

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 134/427 (31%), Positives = 214/427 (50%), Gaps = 37/427 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS ++ + + R   I++Q+++   P   ++  E       
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTKVQLEIKRDGHIWTQEYTDATPGPLIKVGETTGTGT- 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------- 249
             + F PDP IF     F+A  + +  Q  A+L+  +    + D+               
Sbjct: 60  -TVRFWPDPTIFETT-EFNAETVARRLQEMAFLNKGLTMTLTDDRISVEDAVVEATMDVD 117

Query: 250 ------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                       E AE+        +++P GL  Y++     ++ I   +     +  G 
Sbjct: 118 GPEQAETIKSEEEKAEQVVTVRTRTYHYPDGLVDYIKHLNRTKTPIHQTVVGFDVKGTGH 177

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++ 
Sbjct: 178 ---EVEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLVKEKD 234

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             +  DD+      ++SV + +P+F GQTKTKL + + +  V+ A  +   H+   NP E
Sbjct: 235 GKLSGDDIREGLAAVISVKVADPQFEGQTKTKLGNTEVKSFVQKACNEHLGHWFEANPAE 294

Query: 415 ATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++   ++ ++ RL  R+    V RKTA     LPGKLADC  N     E++IVEGDS
Sbjct: 295 AKIIVRKAVDSAQARLAARRARELVRRKTATDIGGLPGKLADCRSNDPSKCEVYIVEGDS 354

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGGSAK  R+  +QA+LP+RGKI+NV  A  +++  N ++  ++ A G     ++    L
Sbjct: 355 AGGSAKSGRDSMHQAILPIRGKIINVEKARIDRVLKNVEVQSIITAFGTGIHDEFDLAKL 414

Query: 534 RYEKVII 540
           RY K+++
Sbjct: 415 RYHKIVL 421


>gi|327200371|gb|AEA36065.1| DNA gyrase subunit B [Agrobacterium rhizogenes]
          Length = 358

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 135/367 (36%), Positives = 201/367 (54%), Gaps = 13/367 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  L + + RQ  I    F+ G+  +PL+       + GT ++F
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLKIRRQGKINEMSFTHGVADAPLKVTGDAGTETGTEVSF 60

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F     FD + L    +  A+L+  V+   +  +          +EE  + GGL
Sbjct: 61  MPSSETF-TMTEFDYSTLEHRLRELAFLNSGVRILLTDKRHSDV-----RQEEMLYDGGL 114

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328
           + +++     +  +  +  + ++EK G    TVE A+ W E   E    + N I   +GG
Sbjct: 115 EAFVKYLDRAKKPLVDKPVSIRSEKDGI---TVEVAMWWNESYHENVLCFTNNIPQRDGG 171

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR I  Y E +   +   +    DD       +LSV + +P+F+ QTK K
Sbjct: 172 THMAGFRGALTRQITSYGESSGITKREKVTLTGDDCREGLTAVLSVKVPDPKFSSQTKDK 231

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           LVS + +  VE+ + +    +L ++P  A  L+  V+E +  R   RK RE   RK A+ 
Sbjct: 232 LVSSEVRPVVESLVNEALGTWLEEHPANAKVLVGKVVEAAAAREAARKARELTRRKGALD 291

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS+     +E+F+VEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  +
Sbjct: 292 IASLPGKLADCSERDPAKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 351

Query: 506 KIRNNQQ 512
           K+ ++Q+
Sbjct: 352 KMLSSQE 358


>gi|226528040|dbj|BAH56562.1| DNA gyrase subunit B [Pseudomonas alcaliphila]
          Length = 380

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 141/392 (35%), Positives = 214/392 (54%), Gaps = 18/392 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS EL +T+ R   I+ Q +  G+P +PL       +  GT+I F
Sbjct: 1   VSGGLHGVGVSVVNALSKELVLTIRRSGKIWEQTYVHGVPQAPLAAVGDT-DGTGTQIHF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +P  + F +   F+   L K  +  ++L+  V      ++         ++E F + GGL
Sbjct: 60  KPSEETFANIH-FNWDILAKRLRELSFLNSGVGILLRDER-------TGKEELFKYEGGL 111

Query: 270 KTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           K +++    N+++++       + E+ G     VE A+ W +     +  + N I   +G
Sbjct: 112 KAFVEYLNTNKTVVNQVFHFNIQREEDGV---GVEVALXWNDCFNENLLCFTNNIPQRDG 168

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH +G R ALTR +  Y E      K  +S   DD       I+SV + +P+F+ QTK 
Sbjct: 169 GTHLAGFRFALTRHLNNYIESEGLAKKFKVSTTGDDAREGLTAIISVKVPDPKFSSQTKD 228

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAI 444
           KLVS + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+
Sbjct: 229 KLVSSEVKTAVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGAL 288

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC +     +EL+IVEGDSAGG AKQ  NR   A+LPL+GKILNV  A  
Sbjct: 289 DIAGLPGKLADCQEKDPALSELYIVEGDSAGGXAKQGXNRKTXAILPLKGKILNVERARF 348

Query: 505 EKIRNNQQIMDLVQALGCRT-RSQYREEDLRY 535
           +++ ++Q++  L+ ALGC   R +Y  + LRY
Sbjct: 349 DRMISSQEVGTLITALGCGIGRDEYNIDKLRY 380


>gi|45128555|gb|AAS55055.1| GyrB [Vibrio parahaemolyticus]
          Length = 374

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 134/384 (34%), Positives = 207/384 (53%), Gaps = 15/384 (3%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K GT+I F P  + F 
Sbjct: 1   GVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPETPLAVVGDA-DKTGTQIRFWPSAETFS 59

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++E        +++ F + GG++ ++Q   
Sbjct: 60  NT-EFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KQDHFMYEGGIQAFVQHLN 112

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ I  +IF    E++     +VE A+ W +     I  + N I   +GGTH +G R 
Sbjct: 113 TNKTPIIEKIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRA 170

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           A+TR +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + + 
Sbjct: 171 AITRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKS 230

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE+A+ +    +LV+NP EA  +   +I+ +  R   RK R    RK A+    LPGKL
Sbjct: 231 AVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKL 290

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 291 ADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 350

Query: 514 MDLVQALGCRTRSQYREE-DLRYE 536
             L+ ALGC           LRY 
Sbjct: 351 ATLITALGCGIGRDEHNPDKLRYH 374


>gi|93277214|gb|ABF06425.1| gyrase B [Streptomyces sp. M3]
          Length = 376

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 195/377 (51%), Gaps = 17/377 (4%)

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS ++ V V      ++Q +  G+P +PL + E   ++ GT +TF  DP IF    
Sbjct: 1   VVNALSTKVAVEVKTDGYRWTQDYKLGVPTAPLARHEPT-DEHGTSVTFWADPDIFETT- 58

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA-----------EKYGIPEKEEFYFPGGL 269
            +    L +  Q  A+L+  ++   + ++E A           ++    +  ++++ GG+
Sbjct: 59  EYSFETLSRRFQEMAFLNKGLRIRLTDERESAKATSGADEAGADEKAEVKSVDYHYEGGI 118

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
             +++     +  +          +      ++E A+ W       + S+ N I T EGG
Sbjct: 119 VDFVKYLNSRKGDVVHPTVIDLEAEDKDKLLSLEVAMQWNSSYTEGVYSFANIIHTHEGG 178

Query: 329 THESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           THE G R ALT  I KYA   +   ++  ++  DD+      I+SV + EP+F GQTKTK
Sbjct: 179 THEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISVKLSEPQFEGQTKTK 238

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-R 445
           L + + +  V+  + +    +L +NP EA  ++   I+ +  R+  RK R++ R+  +  
Sbjct: 239 LGNTEVKTFVQKVVYEHLADWLDRNPNEAADIIRKGIQAATARVAARKARDLTRRKGLLE 298

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV  A  +
Sbjct: 299 TASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPEYQAILPIRGKILNVEKARID 358

Query: 506 KIRNNQQIMDLVQALGC 522
           KI  NQ+I  L+ A G 
Sbjct: 359 KILQNQEIQALISAFGT 375


>gi|327200375|gb|AEA36067.1| DNA gyrase subunit B [Agrobacterium rhizogenes]
 gi|327200381|gb|AEA36070.1| DNA gyrase subunit B [Agrobacterium rhizogenes]
          Length = 358

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 135/367 (36%), Positives = 202/367 (55%), Gaps = 13/367 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  L + + RQ  I    F+ G+  +PL+       + GT ++F
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLKIRRQGKINEMSFTHGVADAPLKVTGDAGTETGTEVSF 60

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F     FD + L    +  A+L+  V+   +  +          +EE  + GGL
Sbjct: 61  MPSSETF-TMTEFDYSTLEHRLRELAFLNSGVRILLTDKRHSDV-----RQEEMLYDGGL 114

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328
           + +++     +  +  +  + ++EK G    TVE A+ W E   E    + N I   +GG
Sbjct: 115 EAFVKYLDRAKKPLVDKPVSIRSEKDGI---TVEVAMWWNESYHENVLCFTNNIPQRDGG 171

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR I  Y E +   +   +    DD       +LSV + +P+F+ QTK K
Sbjct: 172 THMAGFRGALTRQITSYGESSGITKREKVTLTGDDCREGLTAVLSVKVPDPKFSSQTKDK 231

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           LVS + +  VE+ + +    +L ++P +A  L+  V+E +  R   RK RE   RK A+ 
Sbjct: 232 LVSSEVRPVVESLVNEALGTWLEEHPADAKVLVGKVVEAAAAREAARKARELTRRKGALD 291

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS+     +E+F+VEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  +
Sbjct: 292 IASLPGKLADCSERDPAKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 351

Query: 506 KIRNNQQ 512
           K+ ++Q+
Sbjct: 352 KMLSSQE 358


>gi|209863313|gb|ACI88756.1| DNA gyrase subunit B [Aeromonas sp. JH107]
 gi|209863369|gb|ACI88784.1| DNA gyrase subunit B [Aeromonas sp. JH115]
          Length = 365

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 135/377 (35%), Positives = 206/377 (54%), Gaps = 16/377 (4%)

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P IF
Sbjct: 1   VGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPAIF 59

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            D   F    L K  +  ++L+  V      +++  E         F + GG+K +++  
Sbjct: 60  SDTL-FHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------AHFCYEGGIKAFVEYL 111

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G R
Sbjct: 112 NQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFR 168

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS + +
Sbjct: 169 TALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVK 228

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
             VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGK
Sbjct: 229 TAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGK 288

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q+
Sbjct: 289 LADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQE 348

Query: 513 IMDLVQALGCRTRSQYR 529
           +  L+ ALGC       
Sbjct: 349 VGTLITALGCGIGRDEY 365


>gi|313619189|gb|EFR90962.1| DNA topoisomerase 4 subunit B [Listeria innocua FSL S4-378]
          Length = 146

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 47/131 (35%), Positives = 73/131 (55%), Gaps = 12/131 (9%)

Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGK 609
           LLLTFFY+ M  L+E   +F+  PPL+++++G   K V  YA  +E     +++  K   
Sbjct: 2   LLLTFFYRYMRPLVEAGKVFIALPPLYKVSRGSGKKEVIEYAWTDEELDAAIQKIGK--- 58

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669
               I R+KGLGEM A QL ET M+ + RTL+RV ++         +  +  LMG K + 
Sbjct: 59  -GYMIQRYKGLGEMNADQLWETTMNPDTRTLIRVRVDD----SARAERRVATLMGDKVEP 113

Query: 670 RFKFIQERASF 680
           R ++I++   F
Sbjct: 114 RRQWIEKHVEF 124


>gi|188037326|gb|ACD46283.1| DNA gyrase subunit B [Providencia rettgeri]
 gi|188037458|gb|ACD46343.1| DNA gyrase subunit B [Providencia rettgeri]
          Length = 270

 Score =  187 bits (474), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 91/282 (32%), Positives = 147/282 (52%), Gaps = 15/282 (5%)

Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179
            H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L + + R   +
Sbjct: 1   IHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKV 59

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
             Q +  G P  PL    +  ++ GTR+ F P    F     F+   L K  +  ++L+ 
Sbjct: 60  HEQIYKHGEPQGPLTVVGET-DQTGTRVRFWPSMDTFKGVTEFEYDVLAKRLRELSFLNS 118

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            V       ++  E       + F++ GG+K +++    N++ I   +F   TEK G   
Sbjct: 119 GVSIKLVDKRDGKE-------DHFHYEGGIKAFVEYLSRNKTPIHPSVFYFSTEKDGI-- 169

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
             VE ++ W +     +  + N I   +GGTH +G R A+TR +  Y E      K  ++
Sbjct: 170 -GVEVSMQWNDGFQENVYCFTNNIPQRDGGTHLAGFRAAMTRTLNNYMEKEGYQKKSKVN 228

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
              DD     + ++SV + +P+F+ QTK KLVS + +  VE 
Sbjct: 229 ATGDDAREGLIAVISVKVPDPKFSSQTKEKLVSSEVKTAVET 270


>gi|72536113|gb|AAZ73164.1| gyrase B [Yersinia enterocolitica]
          Length = 351

 Score =  187 bits (474), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 122/362 (33%), Positives = 195/362 (53%), Gaps = 15/362 (4%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS++L + + R+  +  Q +  G+P +PL+   +  ++ GT + F P  + F +   F 
Sbjct: 1   ALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DQTGTTVRFWPSFQTFTNNTEFQ 59

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L K  +  ++L+  V       +   E       + F++ GG+K +++   +N++ I
Sbjct: 60  YEILAKRLRELSFLNSGVSIKLRDKRNDKE-------DHFHYEGGIKAFVEYLNKNKNPI 112

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
             ++F   T K       VE A+ W +     I  + N I   +GGTH  G R A+TR +
Sbjct: 113 HPKVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTL 169

Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             Y +      K  IS   DD     + ++SV + +P+F+ QTK KLVS + +  VE  +
Sbjct: 170 NSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLM 229

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQN 459
            +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLADC + 
Sbjct: 230 NEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQER 289

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
               +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ A
Sbjct: 290 DPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITA 349

Query: 520 LG 521
           LG
Sbjct: 350 LG 351


>gi|281331924|emb|CAZ39957.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 371

 Score =  186 bits (473), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 131/366 (35%), Positives = 202/366 (55%), Gaps = 14/366 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS +L + + +    + Q+++ G  L PL++       RGT + F
Sbjct: 1   VSGGLHGVGVSVVNALSQKLVLDIYQGGFHYQQEYADGAALHPLKQIGPSTK-RGTTLRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  K F D   F    L +  +  ++L+  VK     ++          +++F++ GG+
Sbjct: 60  WPSVKAFHDNVEFHYDILARRLRELSFLNSGVKIVLVDERGD------GRRDDFHYEGGI 113

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           +++++   + ++ +   + +   E  G    TVE A+ W +     +  + N I   +GG
Sbjct: 114 RSFVEHLAQLKTPLHPNVISVTGESNGI---TVEVALQWTDSYQETMYCFTNNIPQKDGG 170

Query: 329 THESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  Y E     +   I++  DD+    + +LSV + +P F+ QTK K
Sbjct: 171 THLAGFRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEK 230

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           LVS D +  VE+A     + +L +NP EA  +   +++ +  R   RK R+   RK A+ 
Sbjct: 231 LVSSDVRPXVESAFGQRLEEFLQENPNEAKAIAGKIVDAARAREAARKARDLTRRKGALD 290

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR NQAVLPLRGKILNV  A  +
Sbjct: 291 IAGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFD 350

Query: 506 KIRNNQ 511
           ++  + 
Sbjct: 351 RMLASD 356


>gi|220680504|dbj|BAH10741.1| DNA gyrase subunit B [Nocardia brasiliensis]
          Length = 401

 Score =  186 bits (473), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 119/407 (29%), Positives = 197/407 (48%), Gaps = 35/407 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L   + R    +SQ +   IP      + +   + GT I F  DP+IF     +
Sbjct: 1   NALSSRLEAEIDRDGYHWSQSYKDSIPGKL--VQGEASKQTGTTIRFWADPEIFETTT-Y 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-------------------------YGI 257
           +   + +  Q  A+L+  +    + ++    +                            
Sbjct: 58  NFETVARRLQEMAFLNKGLTITLTDERVSESEITDDVVSETAEAPKHAEADAAAAPVEHK 117

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
            +   +++PGGL+ +++     +  I + +     +  G     +E A+ W       + 
Sbjct: 118 VKTRTYHYPGGLEDFVRHINRTKQPIHNSVVGFTGKGTGH---ELEVAMQWNSGYSESVH 174

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
           ++ NTI T EGGTHE G R ALT  + KYA+  +   ++  ++  DD+      I+SV +
Sbjct: 175 TFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLTGDDIREGLAAIVSVKV 234

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  ++   +  ++ R+  RK
Sbjct: 235 SEPQFEGQTKTKLGNTEVKSFVQKACNEHLTHWFEANPADAKTIVNKAVSSAQARVAARK 294

Query: 435 QRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            RE V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LPLR
Sbjct: 295 ARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLR 354

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           GKI+NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 GKIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYHKIVL 401


>gi|220680185|dbj|BAH10711.1| DNA gyrase subunit B [Nocardia africana]
          Length = 398

 Score =  186 bits (473), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 118/404 (29%), Positives = 202/404 (50%), Gaps = 32/404 (7%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  +   + R    +SQ++    P   ++   +  ++ GT   F  DP +F     +
Sbjct: 1   NALSSRMVTEIDRDGYHWSQEYKDAKPGKLVK--GEPTDRTGTTQRFWADPDVFETTT-Y 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDK------------------EIAEKYGIPEKE--- 261
           +   + +  Q  A+L+  +    + ++                  +  E    PE +   
Sbjct: 58  NFETISRRLQEMAFLNKGLTITLTDERVSEAEVTDEVVSETAEAPKHDEGASAPEHKVKT 117

Query: 262 -EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
             +++PGGL+ +++     +  I + + +  ++  G     +E A+ W       + ++ 
Sbjct: 118 RTYHYPGGLEDFVKHINRTKQPIHNTVVSFTSKGTGH---ELEVAMQWNSGYSESVHTFA 174

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           NTI T EGGTHE G R ALT  + KYA+  +   ++  ++  DD+      I+SV + EP
Sbjct: 175 NTINTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLTGDDIREGLAAIVSVKVSEP 234

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F GQTKTKL + + +  V+    +   H+   NP +A  +++  +  ++ R+  RK RE
Sbjct: 235 QFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQKAVSSAQARVAARKARE 294

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
            V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LPLRGKI
Sbjct: 295 LVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKI 354

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +NV  A  +K+  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 INVEKARIDKVLKNNEVQSIITAFGTGIHDEFDISKLRYHKIVL 398


>gi|110624481|dbj|BAE98187.1| DNA gyrase B subunit [Shewanella algidipiscicola]
          Length = 368

 Score =  186 bits (473), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 203/378 (53%), Gaps = 15/378 (3%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALSD+L +T+ R   ++ Q ++ G+P +P+    +     GT I F P  + 
Sbjct: 1   GVGVSVVNALSDKLQMTIRRDGKVYEQFYTHGVPDAPISVVGEAA-TTGTEIRFWPSNET 59

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F D   F    L K  +  ++L+  V      +++  +       E F + GG+  ++  
Sbjct: 60  FTDV-EFHFDILAKRVRELSFLNSGVGIRLVDERDNRD-------EFFKYEGGISAFVDY 111

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              N++ ++ E+F    E++     TVE A+ W +     I  + N I   +GGTH +G 
Sbjct: 112 LNVNKTPVNKEVFHFIQERED--GITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGF 169

Query: 335 RVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y +      K   S   DD       ++SV + +P+F+ QTK KLVS + 
Sbjct: 170 RSALTRNLNAYMDREGFNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEV 229

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451
           +  VE  + +    YL+++P EA  ++  +I+ +  R   RK R    RK A+    LPG
Sbjct: 230 KTAVEQTMGEQLSDYLMEHPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPG 289

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q
Sbjct: 290 KLADCQEKDPALSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 349

Query: 512 QIMDLVQALGCRTRSQYR 529
           ++  L+ ALGC       
Sbjct: 350 EVATLITALGCGIGRDEY 367


>gi|199974881|gb|ACH92120.1| DNA gyrase subunit B [Thiothrix lacustris]
          Length = 372

 Score =  186 bits (473), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 140/383 (36%), Positives = 199/383 (51%), Gaps = 15/383 (3%)

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVGISVVNALS  L +T+ R   +  Q +  G P++PL          GT + F P  
Sbjct: 1   LHGVGISVVNALSANLELTIRRNGKLHQQMYKLGDPVAPLAIIGDTEG-TGTSVRFWPSA 59

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IF     F    L K  +  ++L+  V+      +          ++ F + GG+K ++
Sbjct: 60  EIFALT-EFHYDILAKRLRELSFLNSGVRIHLLDRRG------EGREDIFEYEGGIKAFV 112

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
                N+S I + I    TE+       VE A+ W +     I  Y N I   +GG+H S
Sbjct: 113 AHLNRNKSPIHNNIIYFTTERDDV---GVEVALQWNDSYQENIFCYTNNIPQRDGGSHLS 169

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR +  Y E      K  IS   DD       +LSV + +P+F+ QTK KLVS 
Sbjct: 170 GFRAALTRTLNSYIESAGLAKKEKISPTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSS 229

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRL 449
           + +  VE A+ +    +L+++P EA  +   +IE +  R   RK R    RK A+    L
Sbjct: 230 EVKGIVEAAMNERLGEFLLESPGEAKLIAGKMIEAARAREAARKAREMTRRKGALDIAGL 289

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC +     +ELF+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ +
Sbjct: 290 PGKLADCQEKDPALSELFLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVERARFDKMIS 349

Query: 510 NQQIMDLVQALGCRTRSQYREED 532
           +Q++  L+ ALGC    +    D
Sbjct: 350 SQEVGTLIIALGCGIGREEYNID 372


>gi|16555885|dbj|BAB69703.2| topoisomerase IV [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 159

 Score =  186 bits (473), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 77/160 (48%), Positives = 105/160 (65%), Gaps = 2/160 (1%)

Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523
           TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+  A+G  
Sbjct: 2   TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGID 61

Query: 524 TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT 583
             S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  PPL+RI 
Sbjct: 62  PDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVKNGHVYVALPPLYRID 120

Query: 584 QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
            G +  YA  EE K  +LE+ K+  KGK  + RFKGLGEM
Sbjct: 121 LGKEVYYALTEEEKAGVLEQLKRK-KGKPNVQRFKGLGEM 159


>gi|72536115|gb|AAZ73165.1| gyrase B [Yersinia enterocolitica]
          Length = 351

 Score =  186 bits (473), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 122/362 (33%), Positives = 195/362 (53%), Gaps = 15/362 (4%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS++L + + R+  +  Q +  G+P +PL+   +  ++ GT + F P  + F +   F 
Sbjct: 1   ALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DQTGTTVRFWPSFQTFTNNTEFQ 59

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L K  +  ++L+  V       +   E       + F++ GG+K +++   +N++ I
Sbjct: 60  YEILAKRLRELSFLNSGVSIKLKDKRNDKE-------DHFHYEGGIKAFVEYLNKNKNPI 112

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
             ++F   T K       VE A+ W +     I  + N I   +GGTH  G R A+TR +
Sbjct: 113 HPKVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTL 169

Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             Y +      K  IS   DD     + ++SV + +P+F+ QTK KLVS + +  VE  +
Sbjct: 170 NSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLM 229

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQN 459
            +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLADC + 
Sbjct: 230 NEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQER 289

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
               +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ A
Sbjct: 290 DPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITA 349

Query: 520 LG 521
           LG
Sbjct: 350 LG 351


>gi|327200377|gb|AEA36068.1| DNA gyrase subunit B [Agrobacterium rhizogenes]
          Length = 358

 Score =  186 bits (473), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 135/367 (36%), Positives = 203/367 (55%), Gaps = 13/367 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  L + + RQ  I    F+ G+  +PL+      ++ GT ++F
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLKIRRQGKINEMSFTHGVADAPLKVTGDAGSETGTEVSF 60

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F     FD + L    +  A+L+  V+   +  +          +EE  + GGL
Sbjct: 61  MPSSETF-TMTEFDYSTLEHRLRELAFLNSGVRILLTDXRHSDV-----RQEEMLYDGGL 114

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328
           + +++     +  +  +  + ++EK G    TVE A+ W E   E    + N I   +GG
Sbjct: 115 EAFVKYLDRAKKPLVDKPVSIRSEKDGI---TVEVAMWWNESYHENVLCFTNNIPQRDGG 171

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR I  Y E +   +   +    DD       +LSV + +P+F+ QTK K
Sbjct: 172 THMAGFRGALTRQITSYGESSGITKREKVTLTGDDCREGLTAVLSVKVPDPKFSSQTKDK 231

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           LVS + +  VE+ + +    +L ++P +A  L+  V+E +  R   RK RE   RK A+ 
Sbjct: 232 LVSSEVRPVVESLVNEALGTWLEEHPADAKVLVGKVVEAAAAREAARKARELTRRKGALD 291

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS+     +E+F+VEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  +
Sbjct: 292 IASLPGKLADCSERDPAKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 351

Query: 506 KIRNNQQ 512
           K+ ++Q+
Sbjct: 352 KMLSSQE 358


>gi|327200369|gb|AEA36064.1| DNA gyrase subunit B [Agrobacterium rhizogenes]
          Length = 358

 Score =  186 bits (473), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 135/367 (36%), Positives = 202/367 (55%), Gaps = 13/367 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  L + + RQ  I    F+ G+  +PL+       + GT ++F
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLKIRRQGKINEMSFTHGVADAPLKVTGDAGTETGTEVSF 60

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F     FD + L    +  A+L+  V+   +  +          +EE  + GGL
Sbjct: 61  MPSSETF-TMTEFDYSTLEHRLRELAFLNSGVRILLTDKRHSDV-----RQEEMLYDGGL 114

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328
           + +++     +  +  +  + ++EK G    TVE A+ W E   E    + N I   +GG
Sbjct: 115 EAFVKYLDRAKKPLVDKPVSIRSEKDGI---TVEVAMWWNESYHENVLCFTNNIPQRDGG 171

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR I  Y E +   +   +    DD       +LSV + +P+F+ QTK K
Sbjct: 172 THMAGFRGALTRQITSYGESSGITKREKVTLTGDDCREGLTAVLSVKVPDPKFSSQTKDK 231

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           LVS + +  VE+ + +    +L ++P +A  L+  V+E +  R   RK RE   RK A+ 
Sbjct: 232 LVSSEVRPVVESLVNEALGTWLEEHPADAKVLVGKVVEAAAAREAARKARELTRRKGALD 291

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS+     +E+F+VEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  +
Sbjct: 292 IASLPGKLADCSERDLAKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 351

Query: 506 KIRNNQQ 512
           K+ ++Q+
Sbjct: 352 KMLSSQE 358


>gi|295979465|dbj|BAJ07405.1| DNA gyrase subunit B [bacterium HMD444]
          Length = 278

 Score =  186 bits (473), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 89/284 (31%), Positives = 139/284 (48%), Gaps = 31/284 (10%)

Query: 95  NLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
           + I V++  +  ++VVDNGRGIPV         P +S  EI++  LHAGGKF+ ++Y++S
Sbjct: 1   DEIVVTIHADNSVSVVDNGRGIPVGIKWDDKHEPKRSAAEIVMCVLHAGGKFNQNSYKVS 60

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI------------PLSPLEKKEKV 199
           GGLHGVG+S VNALS  L +TV R    +  +F RG+            P+  + +    
Sbjct: 61  GGLHGVGVSCVNALSKWLRLTVRRDGKKYFMEFHRGVPAVFDEEVIDGIPVRKMRELGPT 120

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
              RGT + +  D +IFG    +    L K  +  ++L+  V+      +         +
Sbjct: 121 TK-RGTEVHWLADEEIFGT-VEYHYEILAKRLRELSFLNNGVRIKLIDQR-------TGK 171

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG------THRGTVEWAIAWCEEN- 312
           +E+F F GG++ Y++    N+  I   IF  +   K            VE A+ W +   
Sbjct: 172 EEDFAFSGGVRGYVEYLNRNKQPIHPHIFHAQGVVKVPQDVGHEVEIAVEVAMQWNDSYQ 231

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
            ++  Y N I   +GGTH +GLR ALTR I +Y E  +  +   
Sbjct: 232 EQVLCYTNNIPQPDGGTHLTGLRAALTRVINRYIEEQEIAKKAK 275


>gi|207678294|gb|ACI25159.1| DNA gyrase B [Ruegeria sp. 270-3]
          Length = 372

 Score =  186 bits (473), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 123/380 (32%), Positives = 192/380 (50%), Gaps = 13/380 (3%)

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+SVVNALSD L + + R       +F RG  +  L       ++ GT + F      F
Sbjct: 1   VGVSVVNALSDWLELRIWRNGKEHVARFERGDTVKHLTVVGDCGDRTGTEVRFLASTDTF 60

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   +    L K  +  A+L+  V+   S ++          + E ++ GG+  +++  
Sbjct: 61  SNL-EYSFETLEKRLRELAFLNSGVRIVVSDER-----PAERLENELFYEGGVNEFVKYL 114

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
             +++ +       K EK       VE A+ W +     +  + N I   +GGTH +G R
Sbjct: 115 DRSKTPVMDAPIYIKGEKDDI---GVEIAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFR 171

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR I  YA+ +    K  +S   DD       +LSV + +P+F+ QTK KLVS + +
Sbjct: 172 GALTRTINNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVR 231

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
             +E+ + +    +  +NP  A +++  +IE +  R   RK RE   RKTA+    L GK
Sbjct: 232 PVIESLMGEKLAEWFEENPQVAKQVVGKIIEAALAREAARKARELTRRKTAMDVNFLAGK 291

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L DCS+     TE+F+VEGDSAGGSA+  R+R  QA+LPL+GKILNV  A  +++  +Q+
Sbjct: 292 LKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQE 351

Query: 513 IMDLVQALGCRTRSQYREED 532
           I +LV ALG          +
Sbjct: 352 IGNLVMALGTGIGRDEFNIE 371


>gi|220680502|dbj|BAH10740.1| DNA gyrase subunit B [Nocardia beijingensis]
          Length = 399

 Score =  186 bits (473), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 119/405 (29%), Positives = 196/405 (48%), Gaps = 33/405 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L   V      ++Q++    P      + +   + GT I F PDP+IF     F
Sbjct: 1   NALSTRLQAEVDTGGYHWTQEYKDAKPGKL--IQGEPTKRTGTTIRFWPDPEIFETTT-F 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-----------------------YGIPE 259
           +   + +  Q  A+L+  +    + ++    +                           +
Sbjct: 58  NFETVARRLQEMAFLNKGLTIVLTDERVSDTEITDEVVSETAEAPKHAEDAAAPAEHKVK 117

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              +++PGGL+ +++     +  I + +     +  G     +E A+ W       + ++
Sbjct: 118 SRTYHYPGGLEDFVRHINRTKQPIHNSVVAFTGKGTGH---ELEVAMQWNSGYSESVHTF 174

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            NTI T EGGTHE G R ALT  + KYA+  +   ++  ++  DD+      I+SV + E
Sbjct: 175 ANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLTGDDIREGLAAIVSVKVGE 234

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F GQTKTKL + + +  V+    +   H+   NP +A  ++   +  ++ R+  RK R
Sbjct: 235 PQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIVNKAVSSAQARVAARKAR 294

Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LPLRGK
Sbjct: 295 ELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGK 354

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           I+NV  A  +K+  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 IINVEKARIDKVLKNNEVQSIITAFGTGIHDEFDISKLRYHKIVL 399


>gi|220680494|dbj|BAH10736.1| DNA gyrase subunit B [Nocardia araoensis]
          Length = 399

 Score =  186 bits (473), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 119/405 (29%), Positives = 196/405 (48%), Gaps = 33/405 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L   V      ++Q++    P      + +   + GT I F PDP+IF     F
Sbjct: 1   NALSTRLQAEVDTGGYHWTQEYKDAKPGKL--IQGEPTKRTGTTIRFWPDPEIFETTT-F 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-----------------------YGIPE 259
           +   + +  Q  A+L+  +    + ++    +                           +
Sbjct: 58  NFETVARRLQEMAFLNKGLTIVLTDERVSDTEITDEVVSETAEAPKHAEEGAAPAEHKVK 117

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              +++PGGL+ +++     +  I + +     +  G     +E A+ W       + ++
Sbjct: 118 SRTYHYPGGLEDFVRHINRTKQPIHNSVVAFTGKGTGH---ELEVAMQWNSGYSESVHTF 174

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            NTI T EGGTHE G R ALT  + KYA+  +   ++  ++  DD+      I+SV + E
Sbjct: 175 ANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLTGDDIREGLAAIVSVKVGE 234

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F GQTKTKL + + +  V+    +   H+   NP +A  ++   +  ++ R+  RK R
Sbjct: 235 PQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIVNKAVSSAQARVAARKAR 294

Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LPLRGK
Sbjct: 295 ELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGK 354

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           I+NV  A  +K+  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 IINVEKARIDKVLKNNEVQSIITAFGTGIHDEFDISKLRYHKIVL 399


>gi|327200373|gb|AEA36066.1| DNA gyrase subunit B [Agrobacterium rhizogenes]
          Length = 358

 Score =  186 bits (473), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 136/367 (37%), Positives = 204/367 (55%), Gaps = 13/367 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  L + + RQ  I    F+ G+  +PL+      ++ GT ++F
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLKIRRQGKINEMSFTHGVADAPLKVTGDAGSETGTEVSF 60

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F     FD + L    +  A+L+  V+   +  +          +EE  + GGL
Sbjct: 61  MPSSETF-TMTEFDYSTLEHRLRELAFLNSGVRILLTDKRHSDV-----RQEEMLYDGGL 114

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328
           + +++     +  +  +  + ++EK GT   TVE A+ W E   E    + N I   +GG
Sbjct: 115 EAFVKYLDRAKKPLVDKPVSIRSEKDGT---TVEVAMWWNESYHENVLCFTNNIPQRDGG 171

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR I  Y E +   +   +    DD       +LSV + +P+F+ QTK K
Sbjct: 172 THMAGFRGALTRQITSYGESSGITKREKVTLTGDDCREGLTAVLSVKVPDPKFSSQTKDK 231

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           LVS + +  VE+ + +    +L ++P +A  L+  V+E +  R   RK RE   RK A+ 
Sbjct: 232 LVSSEVRPVVESLVNEALGTWLEEHPADAKVLVGKVVEAAAAREAARKARELTRRKGALD 291

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS+     +E+F+VEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  +
Sbjct: 292 IASLPGKLADCSERDPAKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 351

Query: 506 KIRNNQQ 512
           K+ ++Q+
Sbjct: 352 KMLSSQE 358


>gi|330896942|gb|AEC48372.1| gyrase B [Streptomyces drozdowiczii]
          Length = 395

 Score =  186 bits (473), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 125/395 (31%), Positives = 199/395 (50%), Gaps = 20/395 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS  + V V      ++Q +  G+P +PL + E   ++ GT +TF  
Sbjct: 1   GGLHGVGVSVVNALSTRVSVEVKTDGYRWTQDYKFGVPTAPLARNEAT-DETGTSVTFWA 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE--------------KYGI 257
           D  IF     +    L +  Q  A+L+  +    + ++E A+              +   
Sbjct: 60  DGDIFETT-DYSFETLSRRFQEMAFLNKGLTLRLTDERESAKATVGADSSEASDVPEDET 118

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
                +++  G+  Y++     ++ +          +      +VE A+ W  +    + 
Sbjct: 119 ARTVTYHYENGIVDYVKYLNSRKNEVVHPSVIDIESEDKERLLSVEIAMQWNAQYTEGVY 178

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFI 374
           S+ N I T +GGTHE G R ALT  + +YA   +   ++  ++  +D+      I+SV +
Sbjct: 179 SFANAIHTHDGGTHEEGFRAALTSLVNRYARDKKLLREKDDNLAGEDVREGLTAIISVKL 238

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP+F GQTKTKL + +A+  V+  + +    +  +NP EA  ++   I  +  R+  RK
Sbjct: 239 GEPQFEGQTKTKLGNTEAKTFVQKIVHEQLSDWFDRNPNEAADIIRKGIAAATARVAARK 298

Query: 435 QREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            R++ R+  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+R
Sbjct: 299 ARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPMYQAILPIR 358

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528
           GKILNV  A  +KI  N ++  L+ A G      +
Sbjct: 359 GKILNVEKARVDKILQNTEVQALISAFGTGVHEDF 393


>gi|15551685|emb|CAC69422.1| DNA gyrase B subunit [Serratia marcescens]
          Length = 323

 Score =  186 bits (472), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 109/334 (32%), Positives = 176/334 (52%), Gaps = 15/334 (4%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG+SVVNALS++L + + R+  +  Q +S G P +PL    +   
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYSHGEPQAPLTVVGET-E 59

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           + GT + F P  + F +   F+   L K  +  ++L+  V       +   E       +
Sbjct: 60  QTGTMVRFWPSHQTFTNVTDFEYDILAKRLRELSFLNSGVSIRLKDKRTDRE-------D 112

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F++ GG+K +++   +N++ I   +F   T K       VE A+ W +     I  + N
Sbjct: 113 HFHYEGGIKAFVEYLNKNKTPIHPNVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTN 169

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I   +GGTH  G R A+TR +  Y E      K  +S   DD     + ++SV + +P+
Sbjct: 170 NIPQRDGGTHLVGFRTAMTRTLNSYMEKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPK 229

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
           F+ QTK KLVS + +  VE    +    YL++NP +A  ++  +I+ +  R   RK RE+
Sbjct: 230 FSSQTKDKLVSSEVKTAVETLTNEKLVDYLMENPGDAKIVVGKIIDAARSRETARKAREM 289

Query: 439 -NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
             RK A+    LPGKLADC +     +EL++VEG
Sbjct: 290 TRRKGALDLAGLPGKLADCQERDPALSELYLVEG 323


>gi|324962656|gb|ADY62430.1| gyrase subunit B [Frankia sp. ChI7]
          Length = 368

 Score =  186 bits (472), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 105/338 (31%), Positives = 161/338 (47%), Gaps = 19/338 (5%)

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G + V DNGRGIPV  HP      T+E++LTTLHAGGKFD  +Y +SGGLHGVG+
Sbjct: 1   TLLADGGVRVTDNGRGIPVGEHP-VKKIPTVELVLTTLHAGGKFDGESYAVSGGLHGVGV 59

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS  L V +      + Q +    P  PL +    +    T ITF  DP IF   
Sbjct: 60  SVVNALSTRLDVEIQTDGHSWFQPYENSRPARPLAQTGTSKKTG-TTITFWADPTIFET- 117

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDK---EIAEKYGIPEKEEFYFPGGLKTYLQTK 276
             +    L +  Q  A+L+  +      ++      E+   P +  F +  GL  ++   
Sbjct: 118 TTYKYETLFRRLQEMAFLNKGLSITLRDERGKATETEEAAEPTEVTFKYDNGLVDFVGHL 177

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
              +  +   + + +++  G      E A+ W       + ++ NTI T EGGTHE G R
Sbjct: 178 NATKDAVHRSVISLESKGTGI---EAELAMQWNSGYNESVYTFANTINTHEGGTHEEGFR 234

Query: 336 VALTRGIKKYAELTQNKRAISI---------ISDDLMISAVGILSVFIREPEFAGQTKTK 386
            ALT  +  YA+     + +             DD+      I+SV + +P+F GQTKTK
Sbjct: 235 AALTSAVNAYAKDQNLLKPVKAGSKNSDERLSGDDIREGLTAIISVKLAQPQFEGQTKTK 294

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           L + +A++ V+         +   N  EA  ++   ++
Sbjct: 295 LGNTEAKKFVQEMCYSALKDWFEVNRTEARSIVSKALD 332


>gi|116734644|gb|ABK20309.1| DNA gyrase B [Ferrimonas senticii]
          Length = 354

 Score =  186 bits (472), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 132/363 (36%), Positives = 198/363 (54%), Gaps = 15/363 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS +L +TV RQ  ++ Q F  G P+  L+      +K GT I F P  +
Sbjct: 1   HGVGVSVVNALSHKLELTVRRQGHVYEQTFVHGEPVEALKVIGDT-DKTGTIIRFWPSAE 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
            F D   F    L K  +  ++L+  V      +++  E         + + GG+K ++ 
Sbjct: 60  TFSDTT-FHYEILAKRVRELSFLNSGVSIRLVDERDGKE-------SHYCYEGGIKAFVD 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               N++ I+ + F   +E++      VE A+ W +     I  + N I   +GGTH +G
Sbjct: 112 YLNTNKTPINQQAFYFNSERED--GLAVEVAMQWNDGFSENIYCFTNNIPQRDGGTHLAG 169

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   S   DD       ++SV + +P+F+ QTK KLVS +
Sbjct: 170 FRSALTRTLNTYMDKEGYSKKAKTSASGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSE 229

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLP 450
            +  VE A+ +    YL+++P EA +++  +I+ +  R   RK R    RK A+    LP
Sbjct: 230 VKTAVEQAMGEKLSEYLLEHPAEAKQVVTKIIDAARAREAARKAREMTRRKGALDLAGLP 289

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 290 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 349

Query: 511 QQI 513
           Q++
Sbjct: 350 QEV 352


>gi|319958742|gb|ADV90541.1| DNA gyrase subunit B [Bacillus atrophaeus]
          Length = 365

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 131/374 (35%), Positives = 199/374 (53%), Gaps = 13/374 (3%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LS  L VTV R   I  Q + RG+P++ +E   +  +  GT   F PDP+IF +   +D 
Sbjct: 1   LSTTLDVTVHRDGKIHYQAYERGVPMADVEVIGET-DTTGTITHFVPDPEIFTETTVYDY 59

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             L    +  A+L+  VK      +E  E+        + + GG+K+Y++    ++ ++ 
Sbjct: 60  DLLSSRVRELAFLTKGVKITIEDKREEKEQKNE-----YCYEGGIKSYVEYLNRSKEVVH 114

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
            E    +  K G    TVE A+ + +     I S+ N I T EGGTHE+G +  LTR I 
Sbjct: 115 EEPIYIEGTKDGI---TVEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGLTRVIN 171

Query: 344 KYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            YA      +    ++  DD+      I+S+   +P+F GQTKTKL + +A+   +    
Sbjct: 172 DYARKKGIFKESDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDALFS 231

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNI 460
           +  + +L +NP  A K+++  +  +  R+  +K RE   RK+A+    LPGKLADCS   
Sbjct: 232 EALETFLFENPDSARKVIDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKD 291

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  ++ AL
Sbjct: 292 PGISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITAL 351

Query: 521 GCRTRSQYREEDLR 534
           G      +  E  R
Sbjct: 352 GTGIGEDFNLEKAR 365


>gi|2196818|gb|AAB80826.1| DNA gyrase beta-subunit [Shewanella putrefaciens]
          Length = 419

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 133/417 (31%), Positives = 210/417 (50%), Gaps = 15/417 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T   AG     +T +       VG+ VVNALS +L +T+ R   ++ Q ++ G+P 
Sbjct: 1   EVIMTVPRAGVNSKITTTDAYVDRSRVGVPVVNALSKKLQMTIRRAGKVYEQFYTHGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+++        GT I F P    F D   F    L K  +  ++L+  V      +++
Sbjct: 61  APIKEIGDATK-TGTEIRFWPSENTFSDV-EFHFEILAKRVRELSFLNSGVGIRLVDERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + E F + GG+  ++     N++ ++ ++F    E++     TVE A+ W +
Sbjct: 119 N-------KNEFFKYEGGISAFVDYLNRNKTPVNKDLFHFMQERED--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                I  + N I   +GGTH  G R ALTR +  Y E      K   S   DD      
Sbjct: 170 GYQENIFCFTNNIPQRDGGTHLVGFRSALTRNLNSYMENEGYNKKGKTSATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            ++SV + +P+F+ QTK KLVS + +  VE  + +  + YL++NP +A  ++  +++ + 
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEKLNDYLLENPADAKLIVGKIVDAAR 289

Query: 428 ERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK R    RK A+    LPGKLADC +     +E++IVEGD AGGSAKQ RNR N
Sbjct: 290 AREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGFSEIYIVEGDFAGGSAKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTD 543
           QA+LPL+GKILNV  A  +K+   Q++  L+ A+GC       +       +    D
Sbjct: 350 QAILPLKGKILNVEKARFDKMLFFQEVATLITAIGCGIGWSGHDPCAYQGGICSHRD 406


>gi|327200399|gb|AEA36079.1| DNA gyrase subunit B [Rhizobium galegae]
          Length = 358

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 126/367 (34%), Positives = 193/367 (52%), Gaps = 13/367 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  L + + R   +    F+ G+   PL+   +   + GT +TF
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLRIRRNGKLHEISFTHGVADGPLKVIGEYEGRSGTEVTF 60

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
               + F     +D   L    +  A+L+  V+   +  ++   K      EE  + GGL
Sbjct: 61  LASSETF-TMTEYDYGTLEHRLRELAFLNSGVRIRLTDKRKPDIKE-----EEMLYDGGL 114

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           + +++    ++  +  +    K EK G    TVE A+ W +     +    N I   +GG
Sbjct: 115 EAFVRYLDRSKKPLVDKPVAIKGEKDG---MTVEVAMWWNDSYHENMLCSTNNIPQRDGG 171

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  YA+ +    K  +++  +D       +LSV + +P+F+ QTK K
Sbjct: 172 THMAGFRGALTRQVTSYADSSGITKKEKVTLQGEDCREGLTAVLSVKVPDPKFSSQTKDK 231

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIR 445
           LVS + +  VE+ + +    +  ++P EA  L+ + V         R+      RK  + 
Sbjct: 232 LVSSEVRPVVESLMNEALSTWFEEHPTEAKILVGKVVEAAVAREAARKAXELTRRKGVLD 291

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS+     +ELF+VEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  +
Sbjct: 292 IASLPGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 351

Query: 506 KIRNNQQ 512
           K+  +Q+
Sbjct: 352 KMLGSQE 358


>gi|118201812|gb|ABK79719.1| DNA gyrase subunit b [Silicibacter lacuscaerulensis ITI-1157]
          Length = 357

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 121/366 (33%), Positives = 185/366 (50%), Gaps = 13/366 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALSD L + + R       +F RG  +  L+   +  ++ GT + F      F +   +
Sbjct: 1   NALSDWLELRIWRNGKEHFARFERGETVEHLKVVGECGDRTGTEVRFLASTDTFSNL-EY 59

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  A+L+  V+     ++              ++ GG+K +++    +++ 
Sbjct: 60  SFETLEKRLRELAFLNSGVRIILVDERPAERLETE-----LFYEGGVKEFVKYLDRSKTP 114

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
              E    K E+       VE A+ W +     +  + N I   +GGTH +G R ALTR 
Sbjct: 115 AMPEPIYIKGERDDI---GVEIAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRAALTRT 171

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  YA+ +    K  ++   DD       +LSV + +P+F+ QTK KLVS + +  VE  
Sbjct: 172 INNYAQSSGIAKKEKVNFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGM 231

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    +  +NP EA  ++  +IE +  R   RK RE   RKTA+    L GKL DCS+
Sbjct: 232 VNEKLAEWFEENPNEAKTIVGKIIEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSE 291

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TELF+VEGDSAGGSA+  R+R  QAVLPLRGKILNV  A  +++ ++Q+I +LV 
Sbjct: 292 KDPSKTELFLVEGDSAGGSAQTGRDRLTQAVLPLRGKILNVERARFDRMLSSQEIGNLVM 351

Query: 519 ALGCRT 524
           ALG   
Sbjct: 352 ALGTGI 357


>gi|199974894|gb|ACH92121.1| DNA gyrase subunit B [Thiothrix caldifontis]
          Length = 374

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 137/382 (35%), Positives = 199/382 (52%), Gaps = 15/382 (3%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVGISVVNALS  L +T+ R   ++ Q +  G P++PL          GT + F P  +
Sbjct: 1   HGVGISVVNALSSNLELTIRRNGKLYQQMYKLGDPVAPLAIIGDTEG-TGTSVRFWPSAE 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF     F    L K  +  ++L+  V+      +          ++ F + GG+K ++ 
Sbjct: 60  IFALT-EFHYDILAKRLRELSFLNSGVRIHLIDRRG------EGREDIFEYEGGIKAFVA 112

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               N++ I + I    TE+       VE A+ W +     I  Y N I   +GG+H SG
Sbjct: 113 HLNRNKAPIHNNIIYFTTERDDV---GVEVALQWNDSYQENIFCYTNNIPQRDGGSHLSG 169

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y E      K  +S   DD       +LSV + +P+F+ QTK KLVS +
Sbjct: 170 FRAALTRTLNSYIESAGLAKKEKVSPNGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSE 229

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLP 450
            +  VE A+ +    +L+++P EA  +   +IE +  R   RK R    RK A+    LP
Sbjct: 230 VKGIVEAAMNERLTEFLLESPTEAKLIAGKMIEAARAREAARKAREMTRRKGALDIAGLP 289

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +ELF+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++
Sbjct: 290 GKLADCQEKDPALSELFLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVERARFDKMISS 349

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC    +    D
Sbjct: 350 QEVGTLIIALGCGIGREEYNID 371


>gi|270017276|gb|ACZ58155.1| DNA gyrase subunit B [Gordonia sp. CC-S39-5]
          Length = 418

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 134/420 (31%), Positives = 207/420 (49%), Gaps = 39/420 (9%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD+  Y +SGGLHGVGISVVNALS ++ + +      + Q ++   P +  +       K
Sbjct: 1   FDSDAYAVSGGLHGVGISVVNALSTKVELEIQNDGFNWEQTYTYATPGALEK--GTPTRK 58

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK------------- 249
            GT + F PDP+IF +   F+A  + +  Q  A+L+  +    +  +             
Sbjct: 59  TGTTVRFWPDPEIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAIEPPGDADGD 118

Query: 250 ----------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
                           E A     P+   +++P GL  Y++     +  I + +     +
Sbjct: 119 EESGTTEAAEVVKSEEEKAAAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHTTVVGFTGQ 178

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN- 351
             G     VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +  
Sbjct: 179 GTGH---EVEVAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTLTVNKYAMDKKLI 235

Query: 352 --KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
             K+   +  DD+      ++SV + +P+F GQTKTKL + + +  V+    +   H+L 
Sbjct: 236 KDKKEDRLSGDDIREGLAAVISVKVGDPQFEGQTKTKLGNTEVKGFVQRVCSEHLGHWLE 295

Query: 410 QNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFI 468
            NP EA  +++ ++E    R+  R  R+ V RKTA     LPGKLADC  N     E++I
Sbjct: 296 ANPAEAKTIIKKIVESQRARMAARNARDLVRRKTATDIGGLPGKLADCRSNDPGKCEVYI 355

Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528
           VEGDSAGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++
Sbjct: 356 VEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEF 415


>gi|220680554|dbj|BAH10766.1| DNA gyrase subunit B [Nocardia pneumoniae]
          Length = 399

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 118/405 (29%), Positives = 196/405 (48%), Gaps = 33/405 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L   + R    +SQ +    P      + +   K GT I F  DP++F     +
Sbjct: 1   NALSTRLEAEIDRDGYHWSQTYKDATPGKL--VQGEPTKKTGTTIRFWADPEVFETTT-Y 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-----------------------YGIPE 259
           +   + +  Q  A+L+  +    + ++    +                           +
Sbjct: 58  NFETVARRLQEMAFLNKGLTIKLTDERVSDSEVIDEVVSETAEAPKHADQNGAAAEHKVK 117

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              +++PGGL+ +++     +  I + +     +  G     +E A+ W       + ++
Sbjct: 118 TRTYHYPGGLEDFVRHINRTKQPIHNSVVGFTGKGTGH---ELEVAMQWNSGYSESVHTF 174

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            NTI T EGGTHE G R ALT  + KYA+  +   ++  ++  DD+      I+SV + E
Sbjct: 175 ANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLTGDDIREGLAAIVSVKVGE 234

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F GQTKTKL + + +  V+    +   H+   NP +A  ++   +  ++ R+  RK R
Sbjct: 235 PQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIVNKAVSSAQARVAARKAR 294

Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E V RK+A     LPGKLADC     H +E++IVEGDSAGGSAK  R+   QA+LP+RGK
Sbjct: 295 ELVRRKSATDLGGLPGKLADCRSKDPHKSEIYIVEGDSAGGSAKSGRDSMYQAILPIRGK 354

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           I+NV  A  +K+  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 IINVEKARIDKVLKNNEVQSIITAFGTGIHDEFDISKLRYHKIVL 399


>gi|207107912|dbj|BAG71968.1| DNA gyrase subunit B [Gordonia paraffinivorans]
          Length = 411

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 127/416 (30%), Positives = 201/416 (48%), Gaps = 38/416 (9%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           GISVVNALS ++ + + R    + Q ++   P   ++   +   K GT + F PDP+IF 
Sbjct: 1   GISVVNALSTKVELEIERDGHHWEQTYTNAKPGELIK--GEPTKKTGTVVRFWPDPEIFT 58

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------------------------- 249
           +   F+A  + +  Q  A+L+  +    +  +                            
Sbjct: 59  ETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEAPGDGNGDSEPSTAEVAEAVKSE 118

Query: 250 -EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
            E AE    P+   +Y+P GL  Y++     +  I + +     + +G     VE A+ W
Sbjct: 119 TEKAEAAAKPKTRTYYYPDGLVDYIKHLNRTKQPIHNTVIGFSAKGEGH---EVEIAMQW 175

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
                  + ++ NTI T EGGTHE G R ALT  + KYA   +   ++   +  DD+   
Sbjct: 176 NAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLIKEKDGKLTGDDIREG 235

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP EA  +++   + 
Sbjct: 236 LAAVISVKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEANPAEAKVIVKKAADS 295

Query: 426 -SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
                  RR +  V RKTA     LPGKLADC  N     E++IVEGDSAGGSAK  R+ 
Sbjct: 296 AQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEIYIVEGDSAGGSAKSGRDS 355

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 356 MYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDISKLRYHKIVL 411


>gi|51571585|emb|CAH18959.1| gyrase B [Corallococcus coralloides]
          Length = 380

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 128/388 (32%), Positives = 199/388 (51%), Gaps = 17/388 (4%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G   VN LS+   V + R   +  Q ++RG+  SP  +     +KRGT I F+PDP I  
Sbjct: 5   GRPCVNFLSEWFKVRIQRNGKVXEQGYARGVANSPPTEVG-TTDKRGTMIHFKPDPTIME 63

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F+   L +  +  A+L+  +      ++   E         F F GG+ ++++   
Sbjct: 64  TA-DFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD-------FKFDGGIASFVEYLN 115

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           + +  +  +    K+E++G    ++E A+ W +     I ++ N I T EGG+H SG + 
Sbjct: 116 KAKEALHDKPVFIKSEREGV---SLEIAMQWNDGYDERIFTFANNINTHEGGSHLSGFKA 172

Query: 337 ALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  YAE     + +      +D       ++SV +  P+F GQTKTKL + + + 
Sbjct: 173 ALTRTLNSYAEKGGAWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQTKTKLGNSEVKG 232

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
            VE  + D    +L +NP  A K++  V          R+ +  V RK  +    LPGKL
Sbjct: 233 LVEQMVNDQLASFLEENPPVAKKVVAKVGDACRARIAARKARETVRRKGVLDGGGLPGKL 292

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC       +EL+IVEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  EK+  + +I
Sbjct: 293 ADCQSRDPQESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTSAEI 352

Query: 514 MDLVQALGCRTRSQYREE-DLRYEKVII 540
           + L+ ALG    ++  +    RY ++I+
Sbjct: 353 VTLITALGTGIGAEDYDPGKARYHRIIL 380


>gi|327200411|gb|AEA36085.1| DNA gyrase subunit B [Rhizobium giardinii]
          Length = 358

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 136/367 (37%), Positives = 200/367 (54%), Gaps = 13/367 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS +L + + RQ  I    F+ G+  +PL        + GT +TF
Sbjct: 1   VSGGLHGVGVSVVNALSVKLKLKIKRQGKIHEINFTHGVADAPLAVIGDSNGETGTEVTF 60

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F     FD   L    +  A+L+  V+   +  +    +          + GGL
Sbjct: 61  LPSTETFT-MIEFDYGTLEHRLRELAFLNSGVRILLTDKRHSDIRQDE-----MIYDGGL 114

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328
           + ++      +  + S+    + EK G    TVE A+ W +   E    + N I   +GG
Sbjct: 115 EAFVAYLDRAKKPLVSKPVAIRGEKDGI---TVEVAMWWNDSYHENVLCFTNNIPQRDGG 171

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR I  YA+ +    K  +++  DD       +LSV + +P+F+ QTK K
Sbjct: 172 THMAGFRGALTRQIVSYADSSGIMKKEKVTLTGDDCREGLTAVLSVKVPDPKFSSQTKDK 231

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           LVS + +  VE+ + +    +L ++P +A  L+  V+E +  R   RK RE   RK A+ 
Sbjct: 232 LVSSEVRPVVESLVNEALSVWLEEHPGDAKILVGKVVEAAAAREAARKARELTRRKGALD 291

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS+     +ELF+VEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  +
Sbjct: 292 ISSLPGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 351

Query: 506 KIRNNQQ 512
           K+ ++Q+
Sbjct: 352 KMLSSQE 358


>gi|148762451|dbj|BAF63927.1| DNA gyrase subunit B [Virgibacillus sp. M2]
          Length = 325

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 114/336 (33%), Positives = 174/336 (51%), Gaps = 15/336 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG SVVNALS  + V V   N I    F +G+P   +E   +  +  GT +
Sbjct: 1   YKVCGGLHGVGASVVNALSTRMEVHVHLDNKIHFLAFEKGVPQGEIEVVGET-DVTGTTV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F PDP+IF +   +    L +  +  A+L+  +       +   E         +Y+ G
Sbjct: 60  HFIPDPEIFTETTEYQFDILAQRLRELAFLNKGITITIEDKRTGEE------PVNYYYEG 113

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDE 326
           G+ +Y++     + ++ +  F  + E++G     VE AI + +        + N I T E
Sbjct: 114 GISSYVEYINRTKEVLHAP-FYSEGEEEGI---AVEVAIQYNDGFSSNLYSFANNIHTYE 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTHESG R  LTR I  YA  +   +    ++  +D+      I+SV   +P+F GQTK
Sbjct: 170 GGTHESGFRTGLTRVINDYARKSNLFKENDPNLSGEDVREGLTAIVSVKHPDPQFEGQTK 229

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
           TKL + + +   ++   + F  +L +NP     ++E  +  S  R+  +K RE   RK+A
Sbjct: 230 TKLGNSEVRSVTDSIFSETFSKFLFENPTVGKIIVEKGLMASRARMAAKKARELTRRKSA 289

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADCS   A  +EL+IVEGDSAGGSAK
Sbjct: 290 LEISNLPGKLADCSSKDAKISELYIVEGDSAGGSAK 325


>gi|72536111|gb|AAZ73163.1| gyrase B [Yersinia enterocolitica]
          Length = 351

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 121/362 (33%), Positives = 194/362 (53%), Gaps = 15/362 (4%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS++L + + R+  +  Q +  G+P +PL+   +  ++ GT + F P  + F +   F 
Sbjct: 1   ALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DQTGTTVRFWPSFQTFTNNTEFQ 59

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L K  +  ++L+  V       +   E       + F++ GG+K +++   +N++ I
Sbjct: 60  YEILAKRLRELSFLNSGVSIKLKDKRNDKE-------DHFHYEGGIKAFVEYLNKNKNPI 112

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
             ++F   T K       VE A+ W +     I  + N     +GGTH  G R A+TR +
Sbjct: 113 HPKVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNFAQRDGGTHLVGFRTAMTRTL 169

Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             Y +      K  IS   DD     + ++SV + +P+F+ QTK KLVS + +  VE  +
Sbjct: 170 NSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLM 229

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQN 459
            +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLADC + 
Sbjct: 230 NEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQER 289

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
               +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ A
Sbjct: 290 DPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITA 349

Query: 520 LG 521
           LG
Sbjct: 350 LG 351


>gi|15530563|gb|AAD54296.3| DNA gyrase subunit B [Aeromonas veronii]
          Length = 371

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 137/382 (35%), Positives = 207/382 (54%), Gaps = 16/382 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNAL  +L +T+ R   +  Q +  G P +PL++        GT + F P P 
Sbjct: 1   HGVGVSVVNALFXKLFLTIRRNGHVSEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV +R+P+F+ QTK KLVS +
Sbjct: 169 FRTALTRTLNSYMDKEDYSKKAKSAASGDDVRKGLITVISVKVRDPKFSSQTKAKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LP
Sbjct: 229 VKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 348

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC         D
Sbjct: 349 QEVGTLITALGCGIGRDEYNPD 370


>gi|220680564|dbj|BAH10771.1| DNA gyrase subunit B [Nocardia shimofusensis]
          Length = 399

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 121/405 (29%), Positives = 199/405 (49%), Gaps = 33/405 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  + V +      +SQ +    P      + +   + GT + F  DP+IF     F
Sbjct: 1   NALSSRVEVEIDVDGYHWSQTYKDSKPGKL--VQGEPTGRTGTTVRFWADPEIFETTT-F 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDK---------------------EIAEKYGIPEKE 261
           +   + +  Q  A+L+  +    + ++                     E AEK    + +
Sbjct: 58  NFETVARRLQEMAFLNKGLTITLTDERVSDTDITDEVVSETAEAPKPGESAEKPVEHKVK 117

Query: 262 --EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              +++PGGL+ +++     +  I + +     +  G     +E A+ W       + ++
Sbjct: 118 ARTYHYPGGLEDFVRHINRTKQSIHNSVVGFTGKGTGH---ELEVAMQWNSGYSESVHTF 174

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            NTI T EGGTHE G R ALT  + KYA   +   ++  ++  DD+      I+SV I E
Sbjct: 175 ANTINTHEGGTHEEGFRAALTTVVNKYARDKKLLKEKEGNLTGDDIREGLAAIVSVKIAE 234

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F GQTKTKL + + +  V+    +   H+   NP +A  +++  +  ++ R+  RK R
Sbjct: 235 PQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIVQKAVSSAQARMAARKAR 294

Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LPLRGK
Sbjct: 295 ELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGK 354

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           I+NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 IINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYHKIVL 399


>gi|188037337|gb|ACD46288.1| DNA gyrase subunit B [Providencia vermicola]
          Length = 270

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 91/282 (32%), Positives = 147/282 (52%), Gaps = 15/282 (5%)

Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179
            H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L + + R   +
Sbjct: 1   IHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIKRDGKV 59

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
             Q +  G P  PL    +  ++ GTR+ F P    F     F+   L K  +  ++L+ 
Sbjct: 60  HEQIYKHGEPQGPLSVVGET-DQTGTRVRFWPSMDTFKGVTEFEYDVLAKRLRELSFLNS 118

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            V       ++  E       + F++ GG+K +++    N++ I   +F   TEK G   
Sbjct: 119 GVSIKLIDKRDGKE-------DHFHYEGGIKAFVEYLSRNKTPIHPSVFYFSTEKDGI-- 169

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
             VE ++ W +     +  + N I   +GGTH +G R A+TR +  Y E      K  ++
Sbjct: 170 -GVEVSMQWNDGFQENVYCFTNNIPQRDGGTHLAGFRAAMTRTLNNYMEKEGYQKKSKVN 228

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
              DD     + ++SV + +P+F+ QTK KLVS + +  VE 
Sbjct: 229 ATGDDAREGLIAVISVKVPDPKFSSQTKEKLVSSEVKTAVET 270


>gi|188037348|gb|ACD46293.1| DNA gyrase subunit B [Providencia alcalifaciens]
          Length = 270

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 92/282 (32%), Positives = 147/282 (52%), Gaps = 15/282 (5%)

Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179
            H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L + + R   +
Sbjct: 1   IHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKV 59

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
             Q +  G P  PL    +  ++ GTR+ F P    F     F+   L K  +  ++L+ 
Sbjct: 60  HEQIYKHGEPQGPLTVVGET-DQTGTRVRFWPSMDTFKGVTEFEYDILAKRLRELSFLNS 118

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            V       ++  E       + F++ GG+K +++    N++ I   +F   TEK G   
Sbjct: 119 GVSIRLIDKRDGKE-------DHFHYEGGIKAFVEYLSRNKTPIHPSVFYFSTEKDGI-- 169

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
             VE ++ W +     +  + N I   +GGTH +G R A+TR +  Y E      K  +S
Sbjct: 170 -GVEVSMQWNDGFQENVYCFTNNIPQRDGGTHLAGFRAAMTRTLNNYMEKEGYQKKTKVS 228

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
              DD     + ++SV + +P+F+ QTK KLVS + +  VE 
Sbjct: 229 ATGDDAREGLIAVISVKVPDPKFSSQTKEKLVSSEVKTAVET 270


>gi|220680530|dbj|BAH10754.1| DNA gyrase subunit B [Nocardia higoensis]
          Length = 399

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 120/405 (29%), Positives = 199/405 (49%), Gaps = 33/405 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  + V +      +SQ +    P      + +  ++ GT + F  DP+IF     F
Sbjct: 1   NALSSRVEVEIDVDGYHWSQTYKDSKPGKL--VQGEPTSRTGTTVRFWADPEIFETTT-F 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDK---------------------EIAEKYGIPEKE 261
           +   + +  Q  A+L+  +    + ++                     E  +K    + +
Sbjct: 58  NFETVARRLQEMAFLNKGLTITLTDERVSDTDITDDVVSEHAEAPKPGEAVDKPVEQKVK 117

Query: 262 --EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              +++PGGL+ +++     +  I + +     +  G     +E A+ W       + ++
Sbjct: 118 ARTYHYPGGLEDFVRHINRTKQSIHNSVVGFTGKGTGH---ELEVAMQWNSGYSESVHTF 174

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            NTI T EGGTHE G R ALT  + KYA   +   ++  ++  DD+      I+SV I E
Sbjct: 175 ANTINTHEGGTHEEGFRAALTTVVNKYARDKKLLKEKEGNLTGDDIREGLAAIVSVKIAE 234

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F GQTKTKL + + +  V+    +   H+   NP +A  +++  +  ++ R+  RK R
Sbjct: 235 PQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIVQKAVSSAQARVAARKAR 294

Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LPLRGK
Sbjct: 295 ELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGK 354

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           I+NV  A  +K+  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 IINVEKARIDKVLKNNEVQSIITAFGTGIHDEFDISKLRYHKIVL 399


>gi|71833780|emb|CAI94329.1| gyrase B [Helicobacter cinaedi]
          Length = 366

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 135/380 (35%), Positives = 212/380 (55%), Gaps = 18/380 (4%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS +L +T+ +   I+ Q+F++GIP S LE   + +   GT I F PD
Sbjct: 1   GLHGVGVSVVNALSKKLIMTIKKNGHIYRQEFAQGIPQSELEIIGETKEH-GTIIEFYPD 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            ++      FD+  L +  +  AYL+  +   +  ++         ++E ++F GGLK +
Sbjct: 60  GEVMEVL-EFDSQILTRRFKEMAYLNHNITIYFKDER-------TGQEESYHFDGGLKQF 111

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           +Q  +  + L+SS I     E++      VE A+A+ E    ++ S+ N I T +GGTHE
Sbjct: 112 IQD-VNTKPLVSSIISFEALEQET----EVEIALAYNEGYDEKVLSFVNNIRTPDGGTHE 166

Query: 332 SGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G R  L+R I  Y E   N  ++   +  DD+    V I+S  + +P+F GQTK KL S
Sbjct: 167 AGFRAGLSRAIMNYIEANANAREKDSKVTGDDVREGLVAIISTKVIDPQFEGQTKGKLGS 226

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448
              +  V+    +    +  +NP EA  +++  I  +  R   +K R+   +K +     
Sbjct: 227 AFVKPIVQKLTYEKLAKFFEENPTEARIIMQKAIMAARGREAAKKARDLTRKKESFSVGT 286

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADC       +E+++VEGDSAGGSAKQ R+R+ QA+LPLRGKILNV  +  +KI 
Sbjct: 287 LPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKSRLDKIL 346

Query: 509 NNQQIMDLVQALGCRTRSQY 528
            + +I +++ A GC    ++
Sbjct: 347 KSDEIKNMITAFGCGIGDEF 366


>gi|324962642|gb|ADY62423.1| gyrase subunit B [Frankia sp. Cg70.9]
          Length = 360

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 93/335 (27%), Positives = 151/335 (45%), Gaps = 21/335 (6%)

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G + V DNGRGIPV  HP    +  +E++LTTLHAGGKFD  +Y +SGGLHGVG+
Sbjct: 1   TLLADGGVRVTDNGRGIPVGMHP-TEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHGVGV 59

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS  L V +     ++ Q +    P  PL K    R                 + 
Sbjct: 60  SVVNALSTRLDVEIHLDGHVWFQPYVATRPDKPLAKTGTTRRTG--TSVTFWADPTMFET 117

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             +    L +  Q  A+L+  +      +++            + +  GL  ++      
Sbjct: 118 TEYKYETLSRRLQEMAFLNKGLSITLVDERDEERVAVT-----YKYANGLVDFVGHLNAT 172

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  +   + + +++  G      + A+         + ++ NTI T EGGTHE G R AL
Sbjct: 173 KDTVHRSVISLESKGVGI---EAQLAMQCNGGYTESVYTFANTIHTHEGGTHEEGFRAAL 229

Query: 339 TRGIKKYAELTQNKRAISI---------ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           T  +  YA+     + +             DD+      I+SV + +P+F GQTKTKL +
Sbjct: 230 TSAVNAYAKDQNLLKPVKAGAKNSDERLSGDDIREDLTAIISVKLAQPQFEGQTKTKLGN 289

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            +A++ V+         +   N  EA  ++   ++
Sbjct: 290 TEAKKFVQEMCYSALKDWFEVNRTEARAIVSKALD 324


>gi|300508134|dbj|BAJ10899.1| DNA gyrase subunit B [Pseudomonas tuomuerensis]
          Length = 375

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 142/387 (36%), Positives = 211/387 (54%), Gaps = 18/387 (4%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS+EL +T+ R   ++ Q +  G+P +PL    +     GT+I F+P  + 
Sbjct: 1   GVGVSVVNALSEELVMTIRRAGKVWEQTYVHGVPQAPLAAVGETEG-TGTQIHFKPSAQT 59

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   F    L K  +  ++L+  V      ++   E       E F + GGLK +++ 
Sbjct: 60  FRNIH-FSWDILAKRLRELSFLNSGVGIVLRDERSGKE-------ELFKYEGGLKAFVEY 111

Query: 276 KLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESG 333
              N++ ++S      + E+ G     VE A+ W +  N  I  + N I   +GGTH +G
Sbjct: 112 LNTNKTAVNSVFHFTVQREEDGV---GVEVALQWNDGFNENILCFTNNIPQRDGGTHLAG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y E      K  IS   DD       I+SV + +P+F+ QTK KLVS +
Sbjct: 169 FRSALTRNLNNYIEAEGLAKKFKISTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLP 450
            +  VE  +   F  +L++NP +A  ++  +I+ +  R   RK R    RK A+    LP
Sbjct: 229 VKTAVEQEMGKFFADFLLENPNDAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 GKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMLSS 348

Query: 511 QQIMDLVQALGCRT-RSQYREEDLRYE 536
           Q++  L+ ALGC   R +Y  + LRY 
Sbjct: 349 QEVGTLITALGCGIGRDEYNIDKLRYH 375


>gi|207107924|dbj|BAG71974.1| DNA gyrase subunit B [Gordonia sputi]
          Length = 407

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 127/413 (30%), Positives = 201/413 (48%), Gaps = 36/413 (8%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           GISVVNALS ++ + +      + Q ++   P      +     K GT + F  DP+IF 
Sbjct: 1   GISVVNALSTKVELEINYGGYHWEQTYNYAKPGPL--VQGAATRKTGTTVRFWADPEIFE 58

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSC--------------DKEIAEKYGI------ 257
               + A  + +  Q  A+L+  +    +               D++ AEK         
Sbjct: 59  TTT-YSAETVARRLQEMAFLNKGLTITLTDRRPQTAAADAVVEGDEDTAEKPKTAEEEAV 117

Query: 258 ------PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
                 P    +++P GL  Y++     ++ I   +     +  G     VE A+ W   
Sbjct: 118 APTVTKPRTRTYHYPDGLIDYIKHLNRTKTPIHQSVIGFTAKGTGH---EVEIAMQWNSG 174

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVG 368
               + ++ NTI T EGGTHE G R ALT  + KYA   +   ++   +  DD+      
Sbjct: 175 YSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLLKEKDGKLSGDDIREGLAA 234

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP EA  +++  ++ ++ 
Sbjct: 235 VISVKVADPQFEGQTKTKLGNTEVKSFVQKTCNEHLGHWFEANPAEAKIIVKKAVDSAQA 294

Query: 429 RLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
           RL  RK RE V RKTA     LPGKLADC  N     E++IVEGDSAGGSAK  R+   Q
Sbjct: 295 RLAARKARELVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSAGGSAKSGRDSMYQ 354

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A+LP+RGKI+NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 AILPIRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDLAKLRYHKIVL 407


>gi|207107916|dbj|BAG71970.1| DNA gyrase subunit B [Gordonia rhizosphera]
          Length = 408

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 124/414 (29%), Positives = 198/414 (47%), Gaps = 37/414 (8%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           GISVVNALS ++ + +      + Q +    P     ++     K GT + F PDP IF 
Sbjct: 1   GISVVNALSTKVELEINYGGFHWEQSYDHAKPSPL--QQGAATRKTGTTVRFWPDPDIFE 58

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------------------- 258
               F A  + +  Q  A+L+  +    + ++   E                        
Sbjct: 59  TTT-FSAETVARRLQEMAFLNKGLTITLTDNRRSEESVAAEAEMGGNGEETAEVIKSEEE 117

Query: 259 --------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                       +++P GL  Y++     ++ I + +     +  G     VE A+ W  
Sbjct: 118 KAQRAARVRTRTYHYPDGLVDYIKHLNRTKNSIHTSVIAFNAKGTGH---EVEIAMQWNA 174

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                + ++ NTI T EGGTHE G R ALT  + KYA   +   ++   +  DD+     
Sbjct: 175 GYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLLKEKDGKLTGDDIREGLA 234

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP EA  +++  ++ ++
Sbjct: 235 AVISVKVSDPQFEGQTKTKLGNTEVKGFVQKMSNEHLGHWFEANPAEAKTIVKKAVDSAQ 294

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R+  RK RE V RKTA     LPGKLADC  N     E++IVEGDSAGGSAK  R+   
Sbjct: 295 ARMAARKARELVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSAGGSAKSGRDSMY 354

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           QA+LP+RGKI+NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 QAILPIRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDIAKLRYHKIVL 408


>gi|148762447|dbj|BAF63925.1| DNA gyrase subunit B [Virgibacillus sp. KK-B1]
          Length = 325

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 114/336 (33%), Positives = 174/336 (51%), Gaps = 15/336 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG SVVNALS  + V V   N I    F +G+P   +E   +  +  GT +
Sbjct: 1   YKVFGGLHGVGASVVNALSTRMEVHVHLDNKIHFLAFEKGVPQGEIEVVGET-DVTGTTV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F PDP+IF +   +    L +  +  A+L+  +       +   E         +Y+ G
Sbjct: 60  HFIPDPEIFTETTEYQFDILAQRLRELAFLNKGITITIEDKRTGEE------PVSYYYEG 113

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDE 326
           G+ +Y++     + ++ +  F  + E++G    +VE AI + +        + N I T E
Sbjct: 114 GISSYVEYINRTKEVLHAP-FYSEGEEEGI---SVEVAIQYNDGFSSNLYSFANNIHTYE 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTHESG R  LTR I  YA      +    ++  +D+      I+SV   +P+F GQTK
Sbjct: 170 GGTHESGFRTGLTRVINDYARKNNLFKENDPNLSGEDVREGLTAIVSVKHPDPQFEGQTK 229

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
           TKL + + +   ++   + F  +L +NP     ++E  +  S  R+  +K RE   RK+A
Sbjct: 230 TKLGNSEVRSVTDSIFSETFSKFLFENPNVGKIIVEKGLMASRARMAAKKARELTRRKSA 289

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADCS   A  +EL+IVEGDSAGGSAK
Sbjct: 290 LEISNLPGKLADCSSKDAKISELYIVEGDSAGGSAK 325


>gi|327131635|dbj|BAK08535.1| DNA gyrase B subunit [Vibrio owensii]
          Length = 366

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 131/372 (35%), Positives = 203/372 (54%), Gaps = 14/372 (3%)

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+SVVNALS+++ +T+ R   I +Q +  G P +PL       ++ GT+I F P  + F
Sbjct: 1   VGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETF 59

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   F    L K  +  ++L+  V      ++E        + + F F GG++ +++  
Sbjct: 60  TNI-EFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KSDHFMFEGGIQAFVEHL 112

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
             N++ I  +IF    E++      VE A+ W +     I  + N I   +GGTH +G R
Sbjct: 113 NTNKTPIIEKIFHFDFERED--GIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFR 170

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +
Sbjct: 171 AALTRTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVK 230

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGK 452
             VE+A+ +    +L++NP EA  +   +I+ +  R   RK R    RK A+    LPGK
Sbjct: 231 SAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGK 290

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q+
Sbjct: 291 LADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQE 350

Query: 513 IMDLVQALGCRT 524
           +  L+ ALGC  
Sbjct: 351 VATLITALGCGI 362


>gi|29652938|gb|AAO87438.1| DNA gyrase B [Listeria monocytogenes]
          Length = 185

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 78/184 (42%), Positives = 110/184 (59%), Gaps = 2/184 (1%)

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            +R +    + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+L
Sbjct: 4   AKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAIL 63

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550
           P+RGKILNV  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAH
Sbjct: 64  PIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAH 123

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
           I +LLLT FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  
Sbjct: 124 IRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDT 181

Query: 611 KIEI 614
           K  I
Sbjct: 182 KYSI 185


>gi|207107928|dbj|BAG71976.1| DNA gyrase subunit B [Gordonia westfalica]
          Length = 411

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 125/416 (30%), Positives = 201/416 (48%), Gaps = 38/416 (9%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           GISVVNALS ++ + +AR    + Q ++   P +   ++     K GT + F PDP+IF 
Sbjct: 1   GISVVNALSTKVELEIARDGHNWEQTYTYAKPGAL--EQGDATRKTGTTVRFWPDPEIFT 58

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------------------------- 249
           +   F+A  + +  Q  A+L+  +    +  +                            
Sbjct: 59  ETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEPPGDANGDEDAPATDVAEVVQTE 118

Query: 250 -EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
            E A+    P+   +++P GL  Y++     +  I + +     + +G     VE A+ W
Sbjct: 119 TEKAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGFSAKGEGH---EVEIAMQW 175

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
                  + ++ NTI T EGGTHE G R ALT  + KYA   +   ++   +  DD+   
Sbjct: 176 NAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLIKEKDGKLTGDDIREG 235

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              ++S  + +P+F GQTKTKL + + +  V+    +   H+   NP EA  +++   + 
Sbjct: 236 LAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEANPAEAKIIIKKAADS 295

Query: 426 -SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
                  RR +  V RKTA     LPGKLADC  N     E++IVEGDSAGGSAK  R+ 
Sbjct: 296 AQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSAGGSAKSGRDS 355

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 356 MYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDIAKLRYHKIVL 411


>gi|220680584|dbj|BAH10781.1| DNA gyrase subunit B [Nocardia veterana]
          Length = 399

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 117/405 (28%), Positives = 202/405 (49%), Gaps = 33/405 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  +   + R    ++Q++    P   ++   +  N+ GT   F  DP +F     +
Sbjct: 1   NALSTRMVTEIDRDGFHWTQEYKDAKPGKLVK--GEPTNRTGTTQRFWADPAVFETTT-Y 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIA---------EKYGIPEKEE----------- 262
           +   + +  Q  A+L+  +    + ++            E    P+ ++           
Sbjct: 58  NFETIARRLQEMAFLNKGLTITLTDERVSEAEVTDEVVSETADAPKHDDGESQAPEQKVK 117

Query: 263 ---FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              +++PGGL+ +++     +  I + + +  ++  G     +E A+ W       + ++
Sbjct: 118 TRTYHYPGGLEDFVKHINRTKQPIHNTVVSFTSKGTGH---ELEVAMQWNSGYSESVHTF 174

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            NTI T EGGTHE G R ALT  + KYA+  +   ++  ++  DD+      I+SV + E
Sbjct: 175 ANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLTGDDIREGLAAIVSVKVSE 234

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F GQTKTKL + + +  V+    +   H+   NP +A  +++  +  ++ R+  RK R
Sbjct: 235 PQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQKAVSSAQARVAARKAR 294

Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LPLRGK
Sbjct: 295 ELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGK 354

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           I+NV  A  +K+  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 IINVEKARIDKVLKNNEVQSIITAFGTGIHDEFDISKLRYHKIVL 399


>gi|220680550|dbj|BAH10764.1| DNA gyrase subunit B [Nocardia paucivorans]
          Length = 400

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 123/406 (30%), Positives = 197/406 (48%), Gaps = 34/406 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L   V R    +SQ +    P      + +   + GT I F PDP+IF     F
Sbjct: 1   NALSTRLEAEVKRDGYHWSQSYKDATPGKL--IQGEPTRETGTTIRFWPDPEIFETTT-F 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDK------------------------EIAEKYGIP 258
           +   + +  Q  A+L+  +    + ++                        E A      
Sbjct: 58  NFETVARRLQEMAFLNKGLTIVLTDERVGDTDVTDEVVSETAEAPKHAEDGEQAPAEPKV 117

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +   +++PGGL+ +++     ++ I + +        G     +E A+ W       + +
Sbjct: 118 KTRTYHYPGGLEDFVRHINRTKTPIHNSVVAFTGRGTGH---ELEVAMQWNSGYSESVHT 174

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIR 375
           + NTI T EGGTHE G R ALT  + KYA+  +  +    ++  DD+      I+SV + 
Sbjct: 175 FANTINTHEGGTHEEGFRAALTSVVNKYAKEKKLLKEKDGNLTGDDIREGLAAIVSVKVS 234

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           EP+F GQTKTKL + + +  V+    +   H+   NP +A  +++  +  ++ R+  RK 
Sbjct: 235 EPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQKAVSSAQARVAARKA 294

Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LPLRG
Sbjct: 295 RELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRG 354

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           KI+NV  A  +K+  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 KIINVEKARIDKVLKNNEVQAIITAFGTGIHDEFDISKLRYHKIVL 400


>gi|93004065|emb|CAI94331.2| gyrase B [Helicobacter felis]
          Length = 364

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 137/372 (36%), Positives = 208/372 (55%), Gaps = 16/372 (4%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS +L +T+ R   I+ Q+F +GIP +PLE     +  RGT I F PD
Sbjct: 1   GLHGVGVSVVNALSIKLIMTIYRDGQIYRQEFEKGIPTTPLEVVGTTKK-RGTTIEFFPD 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P+I      FD+A L +  Q  AYL+ ++   +               E +++  GLK +
Sbjct: 60  PEIMEVVH-FDSAVLKRRFQEMAYLNNKITLEFHDQ-------PAQVHESYHYQDGLKQF 111

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHE 331
           +      ++ + SEI     + +G     VE A+A+ E   E   S+ N I T EGGTHE
Sbjct: 112 I--IDTQKTPLISEIIAFSAQVEG---MEVEVALAYNESYEEQTFSFVNNIRTIEGGTHE 166

Query: 332 SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           SG ++ L++ I  Y + + ++   S++ +D+      I+S+ + +P+F GQTK KL S  
Sbjct: 167 SGFKMGLSKAILSYIQESNSREGSSVVQEDVREGLSAIISLKLLDPQFEGQTKAKLGSSF 226

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  +   + +    Y  +NP  A  +++ V+  +  R   +K RE   +K ++    LP
Sbjct: 227 VRPIIAKLVYEKVAKYFEENPSIAKAIVQKVLLAARGREAAKKAREITRKKDSLSVGTLP 286

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC        EL++VEGDSAGGSAKQ R+R+ QA+LPLRGKILNV  A   KI  +
Sbjct: 287 GKLADCQSKDPKECELYLVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKAHLGKILKS 346

Query: 511 QQIMDLVQALGC 522
           ++I +++ A GC
Sbjct: 347 EEIKNMITAFGC 358


>gi|150171015|emb|CAN84558.1| DNA gyrase subunit B [Anderseniella baltica]
          Length = 369

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 137/376 (36%), Positives = 201/376 (53%), Gaps = 13/376 (3%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS  L + + R    +   F+ G+  +PL    +  +++GT ITF P 
Sbjct: 1   GLHGVGVSVVNALSSWLKLDIWRGGKHWQMSFTHGVADAPLAIVGEQGDRKGTEITFLPS 60

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
              F     FD A +    +  A+L+  V    S ++     +   +  + ++ GG+  +
Sbjct: 61  TDTFTRV-EFDFATIEHRLRELAFLNSGVFINVSDNR-----HVETKSVDLHYEGGIAAF 114

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHE 331
           ++     +  +  +  +  TE+      TVE A+ W +   E    + N I   +GGTH 
Sbjct: 115 VKYLDRAKQPMLPDPISITTERDDV---TVECALWWNDSYHENVLCFTNNIPQRDGGTHL 171

Query: 332 SGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G R ALTR +  YA  +   +   +    DD       +LSV + +P+F+ QTK KLVS
Sbjct: 172 AGFRGALTRIVNNYANESGIAKREKVSLSGDDAREGLTCVLSVKVPDPKFSSQTKDKLVS 231

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448
            + +  VE+A+ +    +  ++P EA  ++  V E +  R   RK RE   RK A+    
Sbjct: 232 SEVRPIVESAVGEGLSTWFEEHPAEARAIVTKVAEAAAAREAARKARELTRRKGALDIAS 291

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADC +     +ELFIVEGDSAGGSAKQARNR NQAVLPLRGKILNV  A  +K+ 
Sbjct: 292 LPGKLADCQERDPAKSELFIVEGDSAGGSAKQARNRENQAVLPLRGKILNVERARFDKML 351

Query: 509 NNQQIMDLVQALGCRT 524
            +Q+I  L+ ALG   
Sbjct: 352 GSQEIGTLITALGAGI 367


>gi|188037403|gb|ACD46318.1| DNA gyrase subunit B [Providencia burhodogranariea]
 gi|188037447|gb|ACD46338.1| DNA gyrase subunit B [Providencia burhodogranariea]
          Length = 270

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 90/282 (31%), Positives = 147/282 (52%), Gaps = 15/282 (5%)

Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179
            H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L + + R   +
Sbjct: 1   IHEE-EGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKV 59

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
             Q +S G+P   L    +  ++ GT + F P    F     F+   L K  +  ++L+ 
Sbjct: 60  HEQVYSHGVPQGALTVVGET-DQTGTFVRFWPSYDTFKTVTEFEYDILAKRLRELSFLNS 118

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            V       ++  E       + F++ GG+K +++    N++ I   +F   TEK G   
Sbjct: 119 GVSIRLIDKRDGKE-------DHFHYEGGIKAFVEYLSRNKTPIHPSVFYFSTEKDGI-- 169

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
             VE ++ W +     +  + N I   +GGTH +G R A+TR +  Y +      K  +S
Sbjct: 170 -GVEVSMQWNDGFQENVYCFTNNIPQRDGGTHLAGFRAAMTRTLNNYMDKEGYHKKSKVS 228

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
              DD     + ++SV + +P+F+ QTK KLVS + +  VE 
Sbjct: 229 ATGDDAREGLIAVISVKVPDPKFSSQTKEKLVSSEVKTAVET 270


>gi|220680498|dbj|BAH10738.1| DNA gyrase subunit B [Nocardia asiatica]
          Length = 398

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 120/404 (29%), Positives = 196/404 (48%), Gaps = 32/404 (7%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L   + R    +SQ +    P    +   +   K GT I F  DP+IF     +
Sbjct: 1   NALSSRLEAEIDRDGYHWSQTYKDSTPGKLAQ--GEPTKKTGTTIRFWADPEIFETTT-Y 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDK----------------------EIAEKYGIPEK 260
           +   + +  Q  A+L+  +    + ++                      E A      + 
Sbjct: 58  NFETVARRLQEMAFLNKGLTIKLTDERVSDSDVTDEVVSETAEAPKHADESAPAEHKVKT 117

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
             +++PGGL+ +++     +  I + +     +  G     +E A+ W       + ++ 
Sbjct: 118 RTYHYPGGLEDFVRHINRTKQPIHNSVVGFTGKGTGH---ELEVAMQWNSGYSESVHTFA 174

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           NTI T EGGTHE G R ALT  + KYA+  +   ++  ++  DD+      I+SV + EP
Sbjct: 175 NTINTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLTGDDIREGLAAIVSVKVGEP 234

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F GQTKTKL + + +  V+    +   H+   NP +A  ++   +  ++ R+  RK RE
Sbjct: 235 QFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIVNKAVSSAQARVAARKARE 294

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
            V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LP+RGKI
Sbjct: 295 LVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPIRGKI 354

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +NV  A  +K+  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 INVEKARIDKVLKNNEVQSIITAFGTGIHDEFDISKLRYHKIVL 398


>gi|71833823|emb|CAI94343.1| gyrase B [Helicobacter cinaedi]
          Length = 366

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 134/380 (35%), Positives = 211/380 (55%), Gaps = 18/380 (4%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS +L +T+ +   I+ Q+F++GIP S LE   + +   GT I F PD
Sbjct: 1   GLHGVGVSVVNALSKKLIMTIKKNGHIYRQEFAQGIPQSELEIIGETKEH-GTIIEFYPD 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            ++      FD+  L +  +  AYL+  +   +  ++         ++E ++F GGLK +
Sbjct: 60  DEVMEVL-EFDSQILTRRFKEMAYLNHNITIYFKDER-------TGQEESYHFDGGLKQF 111

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           +Q  +  + L+S  I     E++      VE A+A+ E    ++ S+ N I T +GGTHE
Sbjct: 112 IQD-VNTKPLVSLIISFEALEQET----EVEIALAYNEGYDEKVLSFVNNIRTPDGGTHE 166

Query: 332 SGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G R  L+R I  Y E   N  ++   +  DD+    V I+S  + +P+F GQTK KL S
Sbjct: 167 AGFRAGLSRAIMNYIEANANAREKDSKVTGDDVREGLVAIISTKVIDPQFEGQTKGKLGS 226

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448
              +  V+    +    +  +NP EA  +++  I  +  R   +K R+   +K +     
Sbjct: 227 AFVKPIVQKLTYEKLAKFFEENPTEARIIMQKAIMAARGREAAKKARDLTRKKESFSVGT 286

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADC       +E+++VEGDSAGGSAKQ R+R+ QA+LPLRGKILNV  +  +KI 
Sbjct: 287 LPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKSRLDKIL 346

Query: 509 NNQQIMDLVQALGCRTRSQY 528
            + +I +++ A GC    ++
Sbjct: 347 KSDEIKNMITAFGCGIGDEF 366


>gi|83758690|dbj|BAE54516.1| DNA gyrase subunit B [Rhodococcus sp. TKN45]
          Length = 390

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 123/396 (31%), Positives = 195/396 (49%), Gaps = 37/396 (9%)

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVGISVVNALS  L V + R    ++Q ++   P   ++   +   + GT +TF  DP
Sbjct: 1   LHGVGISVVNALSTRLDVDIKRDGFRWNQTYTDSKPGELVK--GEATKETGTTVTFWADP 58

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP--------------- 258
            IF     +    + +  Q  A+L+  +    + ++    +                   
Sbjct: 59  NIFETTV-YSFETVARRLQEMAFLNKGLTITLTDERVSDAEVTEEVVSQVADAPKTAEDE 117

Query: 259 ------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
                       +   +++PGGL+ Y++     +  I + +     +  G     +E A+
Sbjct: 118 SAEAGAPAVHKVKTRVYHYPGGLEDYVRHINRTKQPIHNSVVGFTAKGTGH---ELEIAM 174

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++   +  DD+ 
Sbjct: 175 QWNSGYSESVHTFANTINTHEGGTHEEGFRSALTATVNKYALDKKLLKEKDPKLTGDDIR 234

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                I+SV + EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  ++   +
Sbjct: 235 EGLAAIISVKVGEPQFEGQTKTKLGNTEVRSFVQKASNEHLSHWFEANPADAKTIVNKAV 294

Query: 424 ERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
             ++ R+  RK RE V RK+A     LPGKLADC  N    +E++IVEGDSAGGSAK  R
Sbjct: 295 SSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPSKSEIYIVEGDSAGGSAKSGR 354

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
           +   QA+LPLRGKI+NV  A  +++  N ++  ++ 
Sbjct: 355 DSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIIT 390


>gi|313640116|gb|EFS04737.1| DNA gyrase, B subunit [Listeria seeligeri FSL S4-171]
          Length = 115

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 6/120 (5%)

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           L++  ++++  PPL++I  G +  Y + +   +  L    K    K  I R+KGLGEM  
Sbjct: 1   LLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASLDKD--TKYGIQRYKGLGEMNP 58

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            QL +T M+   RTLL+V I   +    D  ++   LMG + + R KFI+E A ++ ++ 
Sbjct: 59  EQLWDTTMNPEHRTLLQVNIKDAI----DADETFEMLMGDRVEPRRKFIEENAQYVKNLD 114


>gi|157783575|gb|ABV72587.1| gyrase B [Photorhabdus sp. 3014]
          Length = 349

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 122/357 (34%), Positives = 189/357 (52%), Gaps = 15/357 (4%)

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
              ALS++L + + R   +  Q +  G+P SPL+   +   + GTR+ F P    F +  
Sbjct: 2   CCYALSEKLELIIRRDGKVHEQTYHLGVPQSPLKVVGET-EQTGTRVRFWPSMDTFRNNT 60

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L K  +  ++L+  V       +   E       + F++ GG+K +++   +N+
Sbjct: 61  EFQHDILAKRLRELSFLNSGVSIRLLDKRTNIE-------DHFHYEGGIKAFVEFLNKNK 113

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + I   +F   TEK G     VE A+ W +     I  + N I   +GGTH  G R A+T
Sbjct: 114 TPIHPNVFYFSTEKDGI---GVEAALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMT 170

Query: 340 RGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  Y +      K  +S   DD     V ++SV + +P+F+ QTK KLVS + +  VE
Sbjct: 171 RTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVE 230

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADC 456
             + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLADC
Sbjct: 231 TLMNEKLVEYLLENPNDAKTVVSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADC 290

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
            +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 291 QERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 347


>gi|197295756|gb|ACH58589.1| gyrase subunit B [Methylobacterium aerolatum]
          Length = 355

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 130/364 (35%), Positives = 195/364 (53%), Gaps = 15/364 (4%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS  L + + R +   S +F  G  ++PL+       KRGT +TF P 
Sbjct: 1   GLHGVGVSVVNALSQWLRLRIWRNDQEHSMEFRHGDAVAPLKVVGPGEGKRGTEVTFLPS 60

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
              F     FD   L K  +  A+L+  V+   +  +   +K      EE Y+ GG++ +
Sbjct: 61  TDTF-TMIEFDYPTLEKRLRELAFLNSGVRIVLTDARHAEKKR-----EELYYDGGIEAF 114

Query: 273 LQTKLENRSLIS--SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
           ++    ++  +   +     + E+ G     VE A  W +     +  + N I   +GGT
Sbjct: 115 VRYLDRSKKPMDGLTAPVVVRAERDGI---RVECAFWWNDSFNETVLPFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R ALTR I  YA+ +    K  IS+  +D       ++SV + +P+F+ QTK KL
Sbjct: 172 HMAGFRAALTRQITGYADSSGITKKEKISLTGEDCREGLTAVISVQVPDPKFSSQTKDKL 231

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRK 446
           VS + +  VEN L +    +L +NP +A  ++  V+  +  R   RK RE   RK A+  
Sbjct: 232 VSSEVRPAVENVLNEGLSTWLEENPQQARVVMSKVVLAASAREAARKARETVTRKGALDI 291

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +      E+ +VEGDSAGGSAKQ R+R+ QAVLPLRGKILNV    +++
Sbjct: 292 ASLPGKLADCQERDPSKCEILLVEGDSAGGSAKQGRDRAFQAVLPLRGKILNVERVRADR 351

Query: 507 IRNN 510
           + ++
Sbjct: 352 MLSS 355


>gi|284813082|gb|ADB97210.1| DNA gyrase subunit B [Ignatzschineria larvae]
          Length = 352

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 122/364 (33%), Positives = 196/364 (53%), Gaps = 16/364 (4%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LS++L +T+ +   I  Q+++ G P  PL +  +  ++ GT + F+P  ++F D   F+ 
Sbjct: 1   LSEKLKLTIYKHGKIHEQEYTGGEPDYPLREIGET-DQHGTTVYFKPSKEVFTDTT-FEY 58

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             L K  +  A+L+  ++  +  ++         + E F + GG++ Y++   +NR+ I 
Sbjct: 59  DILYKRLRELAFLNSGIRITFKDER-------TDKGEVFEYEGGIRAYVELINKNRNEIH 111

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
             IF    +K       VE A  W +     +  Y N I   +GGTH +G R A+TR + 
Sbjct: 112 PHIFYCDCQKDNI---NVEIAFQWTDGYQESVYCYTNNIPQSDGGTHLAGFRAAMTRTLN 168

Query: 344 KYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
           +Y +     + +      DD       I+SV I  P+F+ QTK KLVS + +  V+  L 
Sbjct: 169 RYMQDEGLLKKLKVATSGDDAREGLTAIISVKIPGPKFSSQTKEKLVSSEVRPVVDGVLA 228

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNI 460
           +  + +L+++P +A  +   +I+ +  R   RK RE   RK+A+    LPGKLADC +  
Sbjct: 229 ERLEQFLLEHPDDAKAITSKIIDAAMAREAARKARENTRRKSALDIAGLPGKLADCQEKD 288

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +ELFIVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +++  + +I  L+ AL
Sbjct: 289 PAQSELFIVEGDSAGGSAKQGRSRKFQAILPLKGKILNVERARFDRMIASAEIGTLITAL 348

Query: 521 GCRT 524
           GC  
Sbjct: 349 GCGI 352


>gi|307592546|gb|ADN65361.1| DNA gyrase subunit B [Chryseobacterium sp. KM]
          Length = 242

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 90/237 (37%), Positives = 149/237 (62%), Gaps = 7/237 (2%)

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRKL 447
           ++ +   V   + +   ++L +NP EA  +++ V +     +  ++ +  V RK+ +   
Sbjct: 1   NIISSGAVYKIVGEMLTNFLEENPNEAKTIVQKVSLAAKARQAAKKAREMVQRKSPMGGS 60

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKL+DCS      +ELF+VEGDSAGG+AKQ R+R  QA+LPLRGKILNV  +   K+
Sbjct: 61  GLPGKLSDCSSKDPAESELFLVEGDSAGGTAKQGRDRHFQAILPLRGKILNVEKSMLHKV 120

Query: 508 RNNQQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
            +N++I ++  ALG    ++          L Y K++IMTDAD+DG+HI++L+LTFF++ 
Sbjct: 121 YDNEEIKNIYTALGVSVGTEQDSKALNMAKLTYHKIVIMTDADIDGSHISTLILTFFFRF 180

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619
           M +LIE  ++++  PPL+ + +G K +YA++E+ ++K   ++    KG I  SR+KG
Sbjct: 181 MKELIENGYIYIAQPPLYLLKKGNKKIYAYNEKKREKFTLDWGPVFKGVIG-SRYKG 236


>gi|207107904|dbj|BAG71964.1| DNA gyrase subunit B [Gordonia jacobaea]
          Length = 407

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 127/413 (30%), Positives = 201/413 (48%), Gaps = 36/413 (8%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           GISVVNALS ++ + +      + Q ++   P      +     K GT + F  DP+IF 
Sbjct: 1   GISVVNALSTQVELEINYGGYHWEQTYNYAKPGPL--VQGAATRKTGTTVRFWADPEIFE 58

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSC--------------DKEIAEKYGI------ 257
               + A  + +  Q  A+L+  +    +               D++ AEK         
Sbjct: 59  TTT-YSAETVARRLQEMAFLNKGLTITLTDRRPQTAAADAVVEGDEDTAEKPKTAEEEAV 117

Query: 258 ------PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
                 P    +++P GL  Y++     ++ I   +     +  G     VE A+ W   
Sbjct: 118 APTVTKPRTRTYHYPDGLIDYIKHLNRTKTPIHQSVIGFTAKGTGH---EVEIAMQWNSG 174

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVG 368
               + ++ NTI T EGGTHE G R ALT  + KYA   +   ++   +  DD+      
Sbjct: 175 YSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLLKEKDGKLSGDDIREGLAA 234

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP EA  +++  ++ ++ 
Sbjct: 235 VISVKVADPQFEGQTKTKLGNTEVKSFVQKTCNEHLGHWFEANPAEAKIIVKKAVDSAQA 294

Query: 429 RLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
           RL  RK RE V RKTA     LPGKLADC  N     E++IVEGDSAGGSAK  R+   Q
Sbjct: 295 RLAARKARELVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSAGGSAKSGRDSMYQ 354

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A+LP+RGKI+NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 AILPIRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDLAKLRYHKIVL 407


>gi|159576582|dbj|BAF92838.1| DNA gyrase subunit B [Halomonas sp. KK-L3-2]
          Length = 325

 Score =  185 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 113/336 (33%), Positives = 174/336 (51%), Gaps = 15/336 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG SVVNALS  + V V   N I    F +G+P   +E   +  +  GT +
Sbjct: 1   YKVFGGLHGVGASVVNALSTRMEVHVHLDNKIHFLAFEKGVPQGEIEVVGET-DVTGTTV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F PDP+IF +   +    L +  +  A+L+  +       +   E         +Y+ G
Sbjct: 60  HFIPDPEIFTETTEYQFDILAQRLRELAFLNKGITITIEDKRTGEEPG------SYYYEG 113

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDE 326
           G+ +Y++     + ++ +  F  + E++G    +VE AI + +        + N + T E
Sbjct: 114 GISSYVEYINRTKEVLHAP-FYSEGEEEGI---SVEVAIQYNDGFSSNLYSFANNVHTYE 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTHESG R  LTR I  YA      +    ++  +D+      I+SV   +P+F GQTK
Sbjct: 170 GGTHESGFRTGLTRVINDYARKNNLFKENDPNLSGEDVREGLTAIVSVKHPDPQFEGQTK 229

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
           TKL + + +   ++   + F  +L +NP     ++E  +  S  R+  +K RE   RK+A
Sbjct: 230 TKLGNSEVRSVTDSIFSETFSKFLFENPTVGKIIVEKGLMASRARMAAKKARELTRRKSA 289

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADCS   A  +EL+IVEGDSAGGSAK
Sbjct: 290 LEISNLPGKLADCSSKDAKISELYIVEGDSAGGSAK 325


>gi|29652932|gb|AAO87435.1| DNA gyrase B [Listeria monocytogenes]
          Length = 181

 Score =  185 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 77/176 (43%), Positives = 107/176 (60%), Gaps = 2/176 (1%)

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILN
Sbjct: 8   RKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILN 67

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT 
Sbjct: 68  VEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTL 127

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           FY+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I
Sbjct: 128 FYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSI 181


>gi|19909531|dbj|BAB86961.1| DNA gyrase subunit B [Thiocapsa rosea]
          Length = 376

 Score =  185 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 135/388 (34%), Positives = 204/388 (52%), Gaps = 16/388 (4%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALSD L + ++R   ++ Q++  G P  PL+      +  GT I 
Sbjct: 1   KVSGGLHGVGVSVVNALSDRLFLKISRGGRLYQQEYHLGEPQYPLKLVGDT-DATGTEIR 59

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F P  + F     F    L K  +  ++L   V+           +     K+ F + GG
Sbjct: 60  FYPSDQTFT-HIQFHYDILAKRLRELSFLISGVRIELF-------EKATGRKDIFQYQGG 111

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           ++ +++   +N+  I   +     E++     TVE AI W       I  Y NTI   +G
Sbjct: 112 IRAFVEHLNQNKEPIHPSVIHFTAERQSV---TVELAIQWNNGYQETIFCYTNTIPQKDG 168

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH +GLR  LTR +  Y E     R      + DD       +LSV + +P+F+ QTK 
Sbjct: 169 GTHLAGLRAGLTRTLNGYIEREGLDRNQKIRPVGDDAREGLTAVLSVKVPDPKFSSQTKD 228

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-I 444
           KLVS + +  VE+ + +  + +L + P EA  +   ++E +  R   RK RE  R+   +
Sbjct: 229 KLVSSEVKAIVESLVVEQLNIFLEEQPAEAKAIANKMLEAARAREAARKAREKTRRKGVL 288

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC +     +EL++VEGDSAGGSAKQ R+R+ QA+LPL+GKILNV  A  
Sbjct: 289 DVAGLPGKLADCQEKDPANSELYLVEGDSAGGSAKQGRDRAFQAILPLKGKILNVEKARF 348

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREED 532
           +K+ ++ ++  L+ ALGC    +    D
Sbjct: 349 DKMLSSAEVGTLITALGCGIGREEYNPD 376


>gi|91093615|gb|ABE11595.1| ParE [Escherichia coli]
          Length = 251

 Score =  185 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 98/254 (38%), Positives = 147/254 (57%), Gaps = 4/254 (1%)

Query: 341 GIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
            ++++ E      R + + ++D+      +LSV +++P+FAGQTK +L S      V   
Sbjct: 1   AMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGV 60

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
           ++D F  +L QN   A  L E  I  ++ R+R    ++V RK       LPGKLADC+  
Sbjct: 61  VKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADCTAQ 118

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
             + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKILN     S+++  +Q++ D+  A
Sbjct: 119 DLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVA 178

Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           +G    S      LRY K+ I+ DAD DG HIA+LL   F +    L++  H+++  PPL
Sbjct: 179 IGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPL 237

Query: 580 FRITQGTKSVYAHD 593
           +RI  G +  YA  
Sbjct: 238 YRIDLGKEVYYALT 251


>gi|188037370|gb|ACD46303.1| DNA gyrase subunit B [Providencia sneebia]
 gi|188037381|gb|ACD46308.1| DNA gyrase subunit B [Providencia sneebia]
 gi|188037392|gb|ACD46313.1| DNA gyrase subunit B [Providencia sneebia]
          Length = 270

 Score =  185 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 93/282 (32%), Positives = 146/282 (51%), Gaps = 15/282 (5%)

Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179
            H +    S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALS++L + + R   +
Sbjct: 1   IHEE-EGVSAAEVIMTVLHAGGKFDGNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGNV 59

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
             Q +  G P  PL    +  ++ GTR+ F P  + F     F+   L K  +  ++L+ 
Sbjct: 60  HEQIYRHGEPQGPLTVVGET-DQTGTRVRFWPSLETFKGVTEFEYEILAKRLRELSFLNS 118

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            V       +   E       + F++ GG+K +++    N++ I   +F   TEK G   
Sbjct: 119 GVSIKLIDKRNGKE-------DHFHYEGGIKAFVEYLSRNKNPIHPSVFYFSTEKDGI-- 169

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
             VE A+ W +     +  Y N I   +GGTH +G R A+TR +  Y +      K  +S
Sbjct: 170 -GVEIAMQWNDGFQENVYCYTNNIPQRDGGTHLAGFRAAMTRTLNNYMDKEGYQKKSKVS 228

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
              DD     + ++SV + +P+F+ QTK KLVS + +  VE 
Sbjct: 229 ATGDDAREGLIAVISVKVPDPKFSSQTKEKLVSSEVKTAVET 270


>gi|118139667|gb|ABK63286.1| DNA gyrase subunit B [Listonella anguillarum]
          Length = 357

 Score =  185 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 128/367 (34%), Positives = 200/367 (54%), Gaps = 14/367 (3%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS+++ +T+ R   I +Q +  G+P +PL    +  +K GT + F P  + 
Sbjct: 1   GVGVSVVNALSEKVLLTIYRNGAIHTQTYCHGVPQAPLAVVGET-DKTGTTLRFWPSAET 59

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   F    L K  +  ++L+  V      ++E  +K      + F + GG+K ++  
Sbjct: 60  FTNI-EFHYDILAKRLRELSFLNSGVSIKLFDEREEDKK------DHFRYEGGIKAFVGH 112

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              N++ I  ++F   +E+      TVE A+ W +     I  + N I   +GG H +G 
Sbjct: 113 LNRNKTPIHEKVFHFSSERDD--GITVEVAMQWNDGFQENIYCFTNNIPQRDGGAHLAGF 170

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + 
Sbjct: 171 RGALTRTLNTFMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEV 230

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451
           +  VE+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK A+    LPG
Sbjct: 231 KSAVESAMGEKLAEFLAENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPG 290

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q
Sbjct: 291 KLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 350

Query: 512 QIMDLVQ 518
           ++  L+ 
Sbjct: 351 EVATLIT 357


>gi|327200387|gb|AEA36073.1| DNA gyrase subunit B [Sinorhizobium xinjiangense]
          Length = 358

 Score =  185 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 131/367 (35%), Positives = 197/367 (53%), Gaps = 13/367 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  L + + R   I    F+ G+   PL+         GT +TF
Sbjct: 1   VSGGLHGVGVSVVNALSTSLKLKIRRSGKIHEMSFTHGVADGPLQVTGDAGTDTGTEVTF 60

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F +   F+   L    +  A+L+  V+   +  +    +          + GGL
Sbjct: 61  LPSEQTFSNV-EFEYTTLEHRLRELAFLNSGVRIVLTDKRHSDIRRDE-----MMYEGGL 114

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328
           + ++      +  +     + + EK G    TVE A+ W +   E    + N I   +GG
Sbjct: 115 EAFVAYLDRAKKPLVHSPVSIRGEKDGI---TVEVAMWWNDSYHENVLCFTNNIPQRDGG 171

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  YAE +    K  +++  +D       +LSV + +P+F+ QTK K
Sbjct: 172 THMAGFRGALTRQVTSYAESSGITKKEKVTLQGEDCREGLTAVLSVKVPDPKFSSQTKNK 231

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           LVS + +  VE+ + +  + +  ++P EA  L+  V+E +  R   RK RE   RK A+ 
Sbjct: 232 LVSSEVRPVVESLVNEALNSWFEEHPSEAKVLVGKVVEAAAAREAARKARELTRRKGALD 291

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS+     +ELF+VEGDSAGGSAKQ R+R +QA+LPLRGKILNV  A  +
Sbjct: 292 ISSLPGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRESQAILPLRGKILNVERARFD 351

Query: 506 KIRNNQQ 512
           K+ ++Q+
Sbjct: 352 KMLSSQE 358


>gi|29652944|gb|AAO87441.1| DNA gyrase B [Listeria monocytogenes]
          Length = 173

 Score =  185 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 77/175 (44%), Positives = 107/175 (61%), Gaps = 2/175 (1%)

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           + + +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV
Sbjct: 1   KSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNV 60

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559
             A  ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT F
Sbjct: 61  EKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLF 120

Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           Y+ M  L++  ++++  PPL++I  G +  Y + +   +  L      G  K  I
Sbjct: 121 YRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSI 173


>gi|284813080|gb|ADB97209.1| DNA gyrase subunit B [Ignatzschineria ureaclastica]
          Length = 352

 Score =  185 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 123/364 (33%), Positives = 196/364 (53%), Gaps = 16/364 (4%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LS +L +T+ +   I  Q++S G P  PL +  +  ++ GT + F+P  ++F D   F+ 
Sbjct: 1   LSSKLKLTIYKHGKIHEQEYSGGEPDYPLREIGET-DQHGTTVHFKPSKEVFNDIT-FEY 58

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             L K  +  A+L+  ++  +  ++         + E F + GG++ Y++   +NR+ I 
Sbjct: 59  DILYKRLRELAFLNSGIRIAFKDER-------TDKGEVFEYAGGIRAYVELINKNRNEIH 111

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
             IF    +K       VE A  W +     +  Y N I   +GGTH +G R A+TR + 
Sbjct: 112 PHIFYCDCQKDNI---NVEIAFQWTDGYQESVYCYTNNIPQSDGGTHLAGFRAAMTRTLN 168

Query: 344 KYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
           +Y +     + +      DD       I+SV I  P+F+ QTK KLVS + +  V+  L 
Sbjct: 169 RYMQDEGLLKKLKVATSGDDAREGLTAIISVKIPGPKFSSQTKEKLVSSEVRPVVDGVLA 228

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNI 460
           +  + +L+++P +A  +   +I+ +  R   RK RE   RK+A+    LPGKLADC +  
Sbjct: 229 ERLEQFLLEHPDDAKAITSKIIDAAMAREAARKARENTRRKSALDIAGLPGKLADCQEKD 288

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +ELFIVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +++ ++ +I  L+ AL
Sbjct: 289 PAQSELFIVEGDSAGGSAKQGRSRKFQAILPLKGKILNVERARFDRMISSAEIGTLITAL 348

Query: 521 GCRT 524
           GC  
Sbjct: 349 GCGI 352


>gi|198042716|gb|ACH81183.1| GyrB [Vibrio sp. UST010723-015]
          Length = 368

 Score =  185 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 130/378 (34%), Positives = 203/378 (53%), Gaps = 14/378 (3%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+++ +T+ R   I +Q +  G P +PL       +K GT+I F P  + F +
Sbjct: 1   VSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQIRFWPSAETFSN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++E        + + F + GG++ ++     
Sbjct: 60  T-EFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KHDHFMYEGGIQAFVDHLNT 112

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ I  +IF   +E++     +VE A+ W +     I  + N I   +GGTH +G R A
Sbjct: 113 NKTPIIEKIFHFNSERED--GISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAA 170

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  
Sbjct: 171 LTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSA 230

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454
           VE+A+ +    +L++NP EA  +   +I+ +  R   RK R    RK A+    LPGKLA
Sbjct: 231 VESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLA 290

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++ 
Sbjct: 291 DCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 350

Query: 515 DLVQALGCRTRSQYREED 532
            L+ ALGC         D
Sbjct: 351 TLITALGCGIGRDEYNPD 368


>gi|220680594|dbj|BAH10786.1| DNA gyrase subunit B [Rhodococcus koreensis]
          Length = 403

 Score =  185 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 120/409 (29%), Positives = 197/409 (48%), Gaps = 37/409 (9%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L V + R    ++Q ++   P   ++   +   + GT +TF  DP IF     +
Sbjct: 1   NALSTRLDVDIKRDGFRWNQTYTDSKPGELVK--GEATKETGTTVTFWADPNIFETTV-Y 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------------------------ 258
               + +  Q  A+L+  +    + ++    +                            
Sbjct: 58  SFETVARRLQEMAFLNKGLTITLTDERVSDAEVTEEVVSQVADAPKSAEDEHAEADAPAV 117

Query: 259 ---EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PE 314
              +   +++PGGL+ Y++     +  I + +     +  G     +E A+ W       
Sbjct: 118 HKVKTRVYHYPGGLEDYVRHINRTKQPIHNSVVGFTAKGTGH---ELEIAMQWNSGYSES 174

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSV 372
           + ++ NTI T EGGTHE G R ALT  + KYA   +   ++   +  DD+      I+SV
Sbjct: 175 VHTFANTINTHEGGTHEEGFRSALTATVNKYALDKKLLKEKDPKLTGDDIREGLAAIISV 234

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
            + EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  ++   +  ++ R+  
Sbjct: 235 KVGEPQFEGQTKTKLGNTEVRSFVQKASNEHLSHWFEANPADAKTIVNKAVSSAQARVAA 294

Query: 433 RKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           RK RE V RK+A     LPGKLADC  N    +E++IVEGDSAGGSAK  R+   QA+LP
Sbjct: 295 RKARELVRRKSATDLGGLPGKLADCRSNDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILP 354

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           LRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 LRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDIAKLRYHKIVL 403


>gi|189164052|gb|ACD77136.1| FusA [Geobacter sp. Ply4]
          Length = 259

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 114/259 (44%), Positives = 161/259 (62%), Gaps = 4/259 (1%)

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEF 379
           I T EGGTH  G + ALTR +  YA      +     I  +DL      ++SV I +P+F
Sbjct: 1   INTHEGGTHLIGFKAALTRTMNTYANTNNLAKNAKVAISGEDLREGLTAVISVKIPQPQF 60

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-V 438
            GQTKTKL + + +  VE  + +    YL +NP  A ++LE  I+ +  R   RK R+  
Sbjct: 61  EGQTKTKLGNSEVKGYVETLMNEKLATYLEENPQVAKRILEKSIDAARAREAARKARDLT 120

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            RK A+    LPGKLADC +      ELF+VEGDSAGGSAKQ R+R  QA+LPL+GKILN
Sbjct: 121 RRKGALEVGTLPGKLADCQEKDPALCELFLVEGDSAGGSAKQGRDRKYQAILPLKGKILN 180

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557
           V  A  +K+ ++Q+I  L+ ALG    +  +    LRY ++I+MTDADVDG+HI +LLLT
Sbjct: 181 VEKARFDKMISSQEIRTLIAALGTSIGKDDFDISKLRYHRIIVMTDADVDGSHILTLLLT 240

Query: 558 FFYQEMYDLIEQKHLFLIS 576
           FF+++M +L+E+ +L++  
Sbjct: 241 FFFRQMTELVERGYLYIAQ 259


>gi|327200391|gb|AEA36075.1| DNA gyrase subunit B [Sinorhizobium terangae]
          Length = 358

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 131/367 (35%), Positives = 197/367 (53%), Gaps = 13/367 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  L + + R   I    F+ G+   PL+         GT +TF
Sbjct: 1   VSGGLHGVGVSVVNALSTSLKLKIRRSGKIHEMSFTHGVADGPLQVTGDAGTDTGTEVTF 60

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F +   F+   L    +  A+L+  V+   +  +    +          + GGL
Sbjct: 61  LPSEQTFSNV-EFEYTTLEHRLRELAFLNSGVRIVLTDKRHSDIRRDE-----MMYEGGL 114

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328
           + ++      +  +     + + EK G    TVE A+ W +   E    + N I   +GG
Sbjct: 115 EAFVAYLDRAKKPLVHSPVSIRGEKDGI---TVEVAMWWNDSYHENVLCFTNNIPQRDGG 171

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  YAE +    K  +++  +D       +LSV + +P+F+ QTK K
Sbjct: 172 THMAGFRGALTRQVTSYAESSGITKKEKVTLQGEDCREGLTAVLSVKVPDPKFSSQTKDK 231

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           LVS + +  VE+ + +  + +  ++P EA  L+  V+E +  R   RK RE   RK A+ 
Sbjct: 232 LVSSEVRPVVESLVNEALNSWFEEHPSEAKVLVGKVVEAAAAREAARKARELTRRKGALD 291

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS+     +ELF+VEGDSAGGSAKQ R+R +QA+LPLRGKILNV  A  +
Sbjct: 292 ISSLPGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRESQAILPLRGKILNVERARFD 351

Query: 506 KIRNNQQ 512
           K+ ++Q+
Sbjct: 352 KMLSSQE 358


>gi|207107892|dbj|BAG71958.1| DNA gyrase subunit B [Gordonia amicalis]
          Length = 411

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 126/416 (30%), Positives = 202/416 (48%), Gaps = 38/416 (9%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           GISVVNALS ++ + +AR    ++Q +S   P +   ++     K GT + F PDP+IF 
Sbjct: 1   GISVVNALSTKVELEIARDGHNWAQTYSYAKPGAL--EQGDATRKTGTTVRFWPDPQIFT 58

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------------------------- 249
           +   F+A  + +  Q  A+L+  +    +  +                            
Sbjct: 59  ETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEAPGDANGDEDAPATDVAEVVLTE 118

Query: 250 -EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
            E A+    P+   +++P GL  Y++     +  I + +     + +G     VE A+ W
Sbjct: 119 TEKAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGFSAKGEGH---EVEIAMQW 175

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
                  + ++ NTI T EGGTHE G R ALT  + KYA   +   ++   +  DD+   
Sbjct: 176 NAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLIKEKDGKLTGDDIREG 235

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              ++S  + +P+F GQTKTKL + + +  V+    +   H+   NP EA  +++   + 
Sbjct: 236 LAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEANPAEAKIIIKKAADS 295

Query: 426 -SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
                  RR +  V RKTA     LPGKLADC  N     E++IVEGDSAGGSAK  R+ 
Sbjct: 296 AQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSAGGSAKSGRDS 355

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 356 MYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDISKLRYHKIVL 411


>gi|71833786|emb|CAI94332.1| gyrase B [Helicobacter felis]
          Length = 364

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 135/372 (36%), Positives = 206/372 (55%), Gaps = 16/372 (4%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS +L +T+ R   I+ Q+F +GIP +PLE     +  RGT I F PD
Sbjct: 1   GLHGVGVSVVNALSIKLIMTIYRDGQIYRQEFEKGIPTTPLEVVGTTKK-RGTTIEFFPD 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P+I      FD+  L +  Q  AYL+ ++   +               E +++  GLK +
Sbjct: 60  PEIMEVV-QFDSGVLKRRFQEMAYLNNKITLEFHDQ-------PAQVHESYHYQDGLKQF 111

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHE 331
           +      ++ + SEI     + +G     VE A+ + E   E   S+ N I T EGGTHE
Sbjct: 112 I--IDTQKTPLISEIIAFSAQVEG---MEVEVALTYNESYEEQTFSFVNNIRTIEGGTHE 166

Query: 332 SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           SG ++ L++ I  Y + + ++   S++ +D+      I+S+ + +P+F GQTK KL S  
Sbjct: 167 SGFKMGLSKAILSYIQESNSREGSSVVQEDVREGLSAIISLKLLDPQFEGQTKAKLGSSF 226

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  +   + +    Y  +NP  A  +++ V+  +  R   +K RE   +K ++    LP
Sbjct: 227 VRPIIAKLVYEKVAKYFEENPSIAKAIVQKVLLAARGREAAKKAREITRKKDSLSVGTLP 286

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC        EL++VEGDSAGGSAKQ R+R+ QA+LPLRGKILNV  A   KI  +
Sbjct: 287 GKLADCQSKDPKECELYLVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKAHLGKILKS 346

Query: 511 QQIMDLVQALGC 522
           ++I +++ A GC
Sbjct: 347 EEIKNMITAFGC 358


>gi|207107922|dbj|BAG71973.1| DNA gyrase subunit B [Gordonia sinesedis]
          Length = 410

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 125/415 (30%), Positives = 202/415 (48%), Gaps = 38/415 (9%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS  + + + R    ++Q++    P    +       K GT + F PD  IF +
Sbjct: 1   MSVVNALSTRVELEIQRDGFHWTQEYRAAEPGPLHK--GSASKKTGTTVRFWPDSSIFTE 58

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDK----------------------------E 250
              F+A  + +  Q  A+L+  +    + ++                            E
Sbjct: 59  TTRFNAETVSRRLQEMAFLNKGLTITLTDNRPQAVEAPGDPTGDEDSGADTAETVKSAEE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
            A     P+   +Y+P GL  Y++     +  I   +    ++  G     VE A+ W  
Sbjct: 119 KAVAEAKPKTRTYYYPDGLVDYIKHLNRTKXPIHQSVIGFTSKGTGH---EVEIAMQWNG 175

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ---NKRAISIISDDLMISA 366
                + ++ NTI T EGGTHE G R ALT  + KYA   +   +++   +  DD+    
Sbjct: 176 GYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYAVEKKFIKDRKEDRLSGDDIREGL 235

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP EA  +++  ++ +
Sbjct: 236 AAVISVKVADPQFEGQTKTKLGNTEVKGFVQKMANEHLGHWFEANPAEAKTIIKKAVDSA 295

Query: 427 EERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
           + RL  RK RE+  RKTA     LPGKLADC  N     E++IVEGDSAGGSAK  R+  
Sbjct: 296 QARLAARKAREMVRRKTATDIGGLPGKLADCRSNDPKKCEVYIVEGDSAGGSAKSGRDSM 355

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            QA+LP+RGKI+NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 356 YQAILPIRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDLAKLRYHKIVL 410


>gi|188037436|gb|ACD46333.1| DNA gyrase subunit B [Providencia sneebia]
          Length = 270

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 93/282 (32%), Positives = 146/282 (51%), Gaps = 15/282 (5%)

Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179
            H +    S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALS++L + + R   +
Sbjct: 1   IHEE-EGVSAAEVIMTVLHAGGKFDGNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGNV 59

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
             Q +  G P  PL    +  ++ GTR+ F P  + F     F+   L K  +  ++L+ 
Sbjct: 60  HEQIYRHGEPQGPLTVVGET-DQTGTRVRFWPSLETFKGVTEFEYEILAKRLRELSFLNS 118

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            V       +   E       + F++ GG+K +++    N++ I   +F   TEK G   
Sbjct: 119 GVSIKLIDKRNGKE-------DHFHYEGGIKAFVEYLSRNKNPIHPSVFYFSTEKDGI-- 169

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
             VE A+ W +     +  Y N I   +GGTH +G R A+TR +  Y +      K  +S
Sbjct: 170 -GVEIAMQWNDGFQENVYCYTNNIPQRDGGTHLAGFRAAMTRTLNNYMDKEGYQKKIQVS 228

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
              DD     + ++SV + +P+F+ QTK KLVS + +  VE 
Sbjct: 229 ATGDDAREGLIAVISVKVPDPKFSSQTKEKLVSSEVKTAVET 270


>gi|220680570|dbj|BAH10774.1| DNA gyrase subunit B [Nocardia takedensis]
          Length = 398

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 116/404 (28%), Positives = 195/404 (48%), Gaps = 32/404 (7%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L   V      ++Q++    P      + +   + GT I F  DP++F     +
Sbjct: 1   NALSTRLEAEVDTDGYHWTQQYKDAKPGKL--IQGEATERTGTTIRFWADPEVFETTT-Y 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK----------------------YGIPEK 260
           +   + +  Q  A+L+  +    + ++                               + 
Sbjct: 58  NFETVSRRLQEMAFLNKGLTIKLTDERVSDSDVTDEVVSETAEAPKQGDTAAPAEHKVKT 117

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
             +++PGGL+ +++     +S I + +     +  G     +E A+ W       + ++ 
Sbjct: 118 RTYHYPGGLEDFVRHINRTKSPIHNSVVGFTGKGTGH---ELEVAMQWNSGYSESVHTFA 174

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           NTI T EGGTHE G R ALT  + KYA+  +   ++  ++  DD+      I+SV + EP
Sbjct: 175 NTINTHEGGTHEEGFRAALTTVVNKYAKDKRLLKEKDGNLTGDDIREGLAAIVSVKVGEP 234

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F GQTKTKL + + +  V+    +   H+   NP +A  ++   +  ++ R+  RK RE
Sbjct: 235 QFEGQTKTKLGNTEVKSFVQKTCNEHLTHWFEANPADAKTIVNKAVSSAQARVAARKARE 294

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
            V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LPLRGKI
Sbjct: 295 LVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKI 354

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 INVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYHKIVL 398


>gi|188037295|gb|ACD46269.1| DNA gyrase subunit B [Providencia heimbachae]
          Length = 270

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 93/282 (32%), Positives = 144/282 (51%), Gaps = 15/282 (5%)

Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179
            H +    S  E+I+T LHAGGKFD++ Y++SGGLHGVG+SVVNALS++L + + R   +
Sbjct: 1   IHEE-EGVSAAEVIMTVLHAGGKFDDNAYKVSGGLHGVGVSVVNALSEKLELIIRRDGKV 59

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
             Q +  G P  PL    +  +  GTR+ F P    F     F+   L K  +  ++L+ 
Sbjct: 60  HEQIYKHGEPQGPLTVVGET-DITGTRVRFWPSMDTFKGITEFEYDILAKRLRELSFLNS 118

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            V       ++  E       + F++ GG+K +++    N++ I   +F   TEK G   
Sbjct: 119 GVSIKLVDKRDGKE-------DHFHYEGGIKAFVEYLSRNKTPIHPNVFYFSTEKDGI-- 169

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
             VE A+ W +     +  Y N I   +GG H +G R A+TR +  Y E      K  +S
Sbjct: 170 -GVEVAMQWNDGFQENVYCYTNNIPQRDGGAHLAGFRAAMTRTLNNYMEKEGYQKKTKVS 228

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
              DD     + ++SV + +P+F+ QTK KLVS + +  VE 
Sbjct: 229 ATGDDAREGLIAVISVKVPDPKFSSQTKEKLVSSEVKTAVET 270


>gi|51571589|emb|CAH18961.1| gyrase B [Corallococcus coralloides]
          Length = 361

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 126/373 (33%), Positives = 196/373 (52%), Gaps = 16/373 (4%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG++ VN L++   V + R   +F Q ++RG+   P  +     +KRGT I F+PDP I
Sbjct: 1   GVGVTCVNFLAEWFKVRIQRNGKVFEQGYARGVSGGPPTEVG-TTDKRGTMIHFKPDPTI 59

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
                 F+   L +  +  A+L+  +      ++   E         F F GG+ ++++ 
Sbjct: 60  METV-DFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD-------FKFDGGIASFVEY 111

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             + +S +  +    K+E++G    ++E A+ W +     I ++ N I T EGG+H SG 
Sbjct: 112 LNKAKSALHDKPVYIKSEREGV---SLEIAMQWNDGYDERIFTFANNINTHEGGSHLSGF 168

Query: 335 RVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           + ALTR +  YAE     + +      +D       ++SV +  P+F GQTKTKL + + 
Sbjct: 169 KSALTRTLNSYAEKGGQWKDLKETPTGEDAREGLSAVISVKLTNPQFEGQTKTKLGNSEV 228

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRKLRLPG 451
           +  VE  + D    +L +NP  A K++  +          R+ +  V RK  +    LPG
Sbjct: 229 KGLVEQMVNDQLASFLEENPPLAKKVVAKIGDACRARIAARKARETVRRKGVLDGGGLPG 288

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC     + +EL+IVEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  EK+  + 
Sbjct: 289 KLADCQSRDPNESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTSA 348

Query: 512 QIMDLVQALGCRT 524
           +I+ L+ ALG   
Sbjct: 349 EIVTLITALGTGI 361


>gi|70947313|ref|XP_743285.1| DNA topoisomerase II [Plasmodium chabaudi chabaudi]
 gi|56522707|emb|CAH74370.1| DNA topoisomerase II, putative [Plasmodium chabaudi chabaudi]
          Length = 937

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 91/201 (45%), Gaps = 13/201 (6%)

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE--DLRYEKVIIMTDA 544
             V PL+GK+LNV  A  +++ +N++I ++ + +G     + +++   LRY  ++IMTD 
Sbjct: 11  YGVFPLKGKLLNVRDASFKQLMDNKEIQNIFKIMGLDITDKNKQDIKGLRYGSLMIMTDQ 70

Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEE 603
           D DG+HI  LL+   ++    L++    L     P+ ++ +G + +        ++  E 
Sbjct: 71  DYDGSHIKGLLINMIHKFWPSLLKHKGFLCEFVTPIVKVQKGNQELSFFTIAEYEQWKE- 129

Query: 604 FKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLM 663
                    +I  +KGLG     + K+   D     +  V +            + +K  
Sbjct: 130 --NTNLLGWKIKYYKGLGTSTDKEFKQYFSDIQSHKI--VFLWTGDRDGDSIDMAFSK-- 183

Query: 664 GTKADERFKFIQER--ASFID 682
             + ++R  ++Q     S++D
Sbjct: 184 -KRIEDRKLWLQNFILGSYVD 203


>gi|62085674|gb|AAX63229.1| DNA gyrase subunit B [Gordonia amarae]
          Length = 412

 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 124/416 (29%), Positives = 196/416 (47%), Gaps = 36/416 (8%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVGISVVNALS ++ + + R    +SQ +    P +    +     K GT   F PDP I
Sbjct: 1   GVGISVVNALSTKVELEIKRDGFQWSQTYLNSEPQTLH--QGAASRKTGTTTRFWPDPAI 58

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP----------------- 258
           F +   F+A  + +  Q  A+L+  +    + ++  A +                     
Sbjct: 59  FTETTRFNAETVARRLQEMAFLNKGLTITLTDNRPQAVEAPGDPNGDGDTPGGTELAEVV 118

Query: 259 -----------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307
                      +   +++  GL  Y++    N+   +    +            VE A+ 
Sbjct: 119 QSPAQKATAKSKTRTYHYADGLIDYIKHI--NKRSKNPIHQSVIGFSGKGTGHEVEIAMQ 176

Query: 308 WCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMI 364
           W +     I ++ NTI T EGGTHE G R ALT  + KYA   +   ++   +  DD+  
Sbjct: 177 WNDGYSESIHTFANTINTHEGGTHEEGFRAALTSTVNKYAADKKLIKEKDTKLTGDDIRE 236

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
               ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP EA  +++  ++
Sbjct: 237 GLAAVISVKVSDPQFEGQTKTKLGNTEVKGFVQKICNEHLAHWFESNPAEAKNIIKKAVD 296

Query: 425 R-SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483
                   RR +  V RKTA     LPGKLADC  N     E++IVEGDSAGGSAK  R+
Sbjct: 297 SAQARAAARRARDMVRRKTATDIGGLPGKLADCRSNDPALCEVYIVEGDSAGGSAKSGRD 356

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
              QA+LP+RGKI+NV  A  +++  N ++  ++ A G     ++    LRY K++
Sbjct: 357 SMYQAILPIRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDIAKLRYHKIV 412


>gi|327200357|gb|AEA36058.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|327200365|gb|AEA36062.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
          Length = 358

 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 133/367 (36%), Positives = 197/367 (53%), Gaps = 13/367 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  L + + R   +    F+ G+  +PL    +   + GT +TF
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGRSGTEVTF 60

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
              P  F     +D   L    +  A+L+  V+   +  +    K     +EE  + GGL
Sbjct: 61  LASPDTFT-MTDYDFGTLEHRLRELAFLNSGVRIVLTDKRHSDIK-----QEELLYDGGL 114

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328
           + +++     +  +  +      EK G    TVE A+ W +   E    + N I   +GG
Sbjct: 115 EAFVRYLDRAKKPLVDKPVAIHGEKDGI---TVEVALWWNDSYHENVLCFTNNIPQRDGG 171

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  YAE +   +   +    +D       ILSV + +P+F+ QTK K
Sbjct: 172 THMAGFRAALTRQMTSYAETSGIMKREKVSLQGEDCREGLTAILSVKVPDPKFSSQTKDK 231

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           LVS + +  VE+ + +    +L ++P +A  L+  V+E +  R   RK RE   RK A+ 
Sbjct: 232 LVSSEVRPVVESLVNEALSTWLEEHPSDAKILVGKVVEAAIAREAARKARELTRRKGALD 291

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS+     +ELF+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +
Sbjct: 292 IASLPGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFD 351

Query: 506 KIRNNQQ 512
           K+ ++Q+
Sbjct: 352 KMLSSQE 358


>gi|307343768|emb|CBJ19489.1| gyrase B subunit [Micromonospora eburnea]
          Length = 368

 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 107/373 (28%), Positives = 187/373 (50%), Gaps = 9/373 (2%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V + +   ++ Q++    P    +   +  ++ G+ ++F PDP +F     FD   + + 
Sbjct: 2   VEIHKDGFVWRQQYHNSKPTPLEK--GEPTDRTGSAVSFWPDPDVFETV-DFDFQTIYRR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            Q  A+L+  +      ++    + G P +  F++ GG+  +++    +++ I   +   
Sbjct: 59  LQEMAFLTRGLTIHLLDERAPEGEEGKPREVTFHYEGGIADFVRHLNASKNPIHKTVVEF 118

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             E++G    +VE A+ W E     + ++ N I T EGGTHE G R ALT  + +Y    
Sbjct: 119 GAEEEG---MSVEIAMQWNESYGESVYTFANNINTHEGGTHEEGFRAALTSVVNRYGADK 175

Query: 350 QNKRAISI-ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
           +  +       +D+      I+SV +  P+F GQTKTKL +   +  V+    +    + 
Sbjct: 176 KLLKGDERLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTPVKSFVQRVCNESLVDWF 235

Query: 409 VQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
            +NP EA  ++ +           ++ ++   RK+ +    +PGKLADC       +E+F
Sbjct: 236 DRNPAEAKIIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVF 295

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           IVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG      
Sbjct: 296 IVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGIHDD 355

Query: 528 YREEDLRYEKVII 540
           +  E LRY K+++
Sbjct: 356 FDIEKLRYHKILL 368


>gi|307343876|emb|CBJ19543.1| gyrase B subunit [Micromonospora sp. SR15]
          Length = 367

 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 109/373 (29%), Positives = 188/373 (50%), Gaps = 9/373 (2%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V + +   ++ Q+++   P    +   +  ++ G+ + F PDP +F     FD   + + 
Sbjct: 1   VEIHKDGFVWRQQYTASKPSPLDK--GETTDRTGSAVAFWPDPDVFETV-DFDFQTIYRR 57

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            Q  A+L+  +      ++   E+ G   +  F + GG+  +++    +++ I   +   
Sbjct: 58  LQEMAFLNRGLTIHLLDERVAEEENGRQREVTFCYKGGIADFVRHLNASKTPIHKTVVEF 117

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             E++G    ++E A+ W E     + ++ NTI T EGGTHE G R ALT  + KY    
Sbjct: 118 AGEEEG---MSLEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRAALTSLVNKYGAEK 174

Query: 350 QN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
           +  K    +  +D+      I+SV +  P+F GQTKTKL +   +  V+    +    + 
Sbjct: 175 KLLKSDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNEWLVDWF 234

Query: 409 VQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
            +NP EA  ++ +           ++ ++   RK+ +    +PGKLADC       +E+F
Sbjct: 235 DRNPAEAKVIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVF 294

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           IVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG      
Sbjct: 295 IVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGIHDD 354

Query: 528 YREEDLRYEKVII 540
           +  E LRY K+++
Sbjct: 355 FDMEKLRYHKMLL 367


>gi|207107888|dbj|BAG71956.1| DNA gyrase subunit B [Gordonia alkanivorans]
          Length = 411

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 126/416 (30%), Positives = 201/416 (48%), Gaps = 38/416 (9%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           GISVVNALS ++ + +AR    ++Q +S   P +   ++     K GT + F PDP IF 
Sbjct: 1   GISVVNALSTKVELEIARDGHNWTQAYSYAKPGAL--EQGDATRKTGTTVRFWPDPDIFT 58

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------------------------- 249
           +   F+A  + +  Q  A+L+  +    +  +                            
Sbjct: 59  ETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEPPGDPNGDEDAPTTDVAEVVLSE 118

Query: 250 -EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
            E A+    P+   +++P GL  Y++     +  I + +     + +G     VE A+ W
Sbjct: 119 TEKAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGFSAKGEGH---EVEIAMQW 175

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
                  + ++ NTI T EGGTHE G R ALT  + KYA   +   ++   +  DD+   
Sbjct: 176 NAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLIKEKDGKLTGDDIREG 235

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              ++S  + +P+F GQTKTKL + + +  V+    +   H+   NP EA  +++   + 
Sbjct: 236 LAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEANPAEAKIIIKKAADS 295

Query: 426 -SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
                  RR +  V RKTA     LPGKLADC  N     E++IVEGDSAGGSAK  R+ 
Sbjct: 296 AQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSAGGSAKSGRDS 355

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 356 MYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDIAKLRYHKIVL 411


>gi|145640542|ref|ZP_01796126.1| DNA gyrase subunit B [Haemophilus influenzae R3021]
 gi|145275128|gb|EDK14990.1| DNA gyrase subunit B [Haemophilus influenzae 22.4-21]
          Length = 310

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 89/211 (42%), Positives = 135/211 (63%), Gaps = 2/211 (0%)

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458
           + +    YL++NP +A  ++  +I  +  R   RK R    RK A+    LPGKLADC +
Sbjct: 1   MNEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 60

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +EL++VEGDSAGGSAK  R+R  QA+LPL+GKILNV  A  +K+ ++Q++  L+ 
Sbjct: 61  KDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLIT 120

Query: 519 ALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577
           ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY+++ +LIE+ ++++  P
Sbjct: 121 ALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQIPELIERGYVYIAQP 180

Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           PL+++ +G +  Y  D +  ++        G
Sbjct: 181 PLYKVKKGKQERYIKDADEMEQYELTLALDG 211


>gi|327200409|gb|AEA36084.1| DNA gyrase subunit B [Rhizobium undicola]
          Length = 358

 Score =  183 bits (465), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 137/367 (37%), Positives = 202/367 (55%), Gaps = 13/367 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS +L + + R   +    F+ G+  +PL        + GT +TF
Sbjct: 1   VSGGLHGVGVSVVNALSVKLSLRIRRSGKVHEMSFTHGVADAPLAVTGSYEGRSGTEVTF 60

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F     FD   L    +  A+L+  V+   +  ++   +     +EE  + GGL
Sbjct: 61  LPSAETFTKT-EFDYGTLEHRLRELAFLNSGVRILLTDKRKSDIR-----QEEMIYDGGL 114

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328
           + +++    ++  +  +    K EK G    TVE A+ W +   E    + N I   +GG
Sbjct: 115 EAFVRYLDRSKKSLVDKPVYIKGEKDGI---TVEVAMWWNDSYHENVLCFTNNIPQRDGG 171

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR I  YA+ +    K  +S+  DD       +LSV + +P+F+ QTK K
Sbjct: 172 THMAGFRGALTRQITSYADSSGIIKKEKVSLTGDDCREGLSAVLSVKVPDPKFSSQTKDK 231

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           LVS + +  VEN + +    +L ++P EA  L+  V+E +  R   RK RE   RK A+ 
Sbjct: 232 LVSSEVRPVVENLVNEALSTWLEEHPSEAKILVSKVVEAAVAREAARKARELTRRKGALD 291

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS+     +ELF+VEGDS GGSAKQ R+R  QA+LPLRGKILNV  A  +
Sbjct: 292 IASLPGKLADCSERDPSKSELFLVEGDSXGGSAKQGRSRETQAILPLRGKILNVERARFD 351

Query: 506 KIRNNQQ 512
           K+ ++Q+
Sbjct: 352 KMLSSQE 358


>gi|89143192|emb|CAJ57493.1| DNA gyrase subunit B [Microbacterium kitamiense]
          Length = 378

 Score =  183 bits (465), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 118/378 (31%), Positives = 186/378 (49%), Gaps = 16/378 (4%)

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  L V V RQ +++ Q ++ G        K +   + GT ITF PD  IF     
Sbjct: 1   VNALSSRLEVEVKRQGSVWRQSYATGGVPQAPLAKGEDSTETGTTITFWPDDTIFETVV- 59

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDK----------EIAEKYGIPEKEEFYFPGGLKT 271
           FD   L    Q  A+L+  ++     ++            A+    P  + F +  GL  
Sbjct: 60  FDYDTLRTRFQQMAFLNKGLRISLRDERPEGLVDIDGLADADAAPQPRSDSFLYERGLVD 119

Query: 272 YLQTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
           Y++     R          + E +    +  +E A+ W       + ++ NTI T EGGT
Sbjct: 120 YVEHLNRVRHAEVVNDEIVEVESEDTERKIALELAMQWTTSYTENVFTFANTINTHEGGT 179

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           HE G R ALT  + +YA       ++  ++  +D+      ++SV + EP+F GQTKTKL
Sbjct: 180 HEEGFRAALTTLVNRYARAQNLLKEKDDNLTGEDIREGLTAVISVKLSEPQFEGQTKTKL 239

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRK 446
            + +A+  V+  + D    +  +NP++A  ++   I+ +  R+  RK RE  R+ +    
Sbjct: 240 GNTEAKAFVQKVVGDKLGDWFDRNPVQAKNVIRKAIDAASARMAARKARETARRKSVFES 299

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             +P KL DC+      +E+F+VEGDSAGGSA Q R+   QA+L LRGKILNV  A  +K
Sbjct: 300 AAMPDKLKDCTSKDPSISEIFLVEGDSAGGSAVQGRDPHTQAILALRGKILNVERARLDK 359

Query: 507 IRNNQQIMDLVQALGCRT 524
             +N+++  ++QA G   
Sbjct: 360 ALSNKEVQAMIQAFGTGI 377


>gi|211927043|dbj|BAG82774.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 446

 Score =  183 bits (465), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 137/450 (30%), Positives = 200/450 (44%), Gaps = 61/450 (13%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y +SGGLHGVGISVVNALS  +   + R    + Q F+  +P   +E         GT I
Sbjct: 1   YAVSGGLHGVGISVVNALSTRVEADIKRAGKHWIQNFNMAVPDELVE--GSNARGTGTAI 58

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK------------------ 249
            F PDP+IF     FD   + +  Q  A+L+  +      ++                  
Sbjct: 59  RFWPDPEIFET-TEFDFDVISRRLQEMAFLNKGLTITLKDERVTEEELELEALAEGGDTA 117

Query: 250 -------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT---- 292
                        E  E     E  +      +   +      +                
Sbjct: 118 ESIDGDSFDDEALEGTEASETKEVTDAESGEDIADDIAPSKPKKLEKKVSYHYPDGLIDY 177

Query: 293 ------------------EKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
                             E KG     VE A+ W       + ++ NTI T EGGTHE G
Sbjct: 178 VKYLNKSKSEIHPTIVGFEAKGD-DHEVEIAMQWNSGYKESVHTFANTINTHEGGTHEEG 236

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALT  + +YA   +   ++  ++  DD       ++S  + +P+F GQTKTKL + +
Sbjct: 237 FRAALTTLMNRYAREHKLLKEKDPNLTGDDCREGLAAVVSARVGDPQFEGQTKTKLGNTE 296

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  V+ A+ +    +   NP EA  ++   +  S  R+  RK R+ V RK+A     LP
Sbjct: 297 LKGFVQRAVNEHLAFWFDANPAEAKAIVNKAVASSHARVAARKARDLVRRKSATDMGGLP 356

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC     +  ELFIVEGDSAGGSAKQ R+   QA+LPLRGKILNV  A  +++  N
Sbjct: 357 GKLADCRTKDPNAAELFIVEGDSAGGSAKQGRDSMYQAILPLRGKILNVEKARLDRVLKN 416

Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            ++  ++ ALG     ++  E LRY K+++
Sbjct: 417 AEVQAIITALGTGINEEFDIEKLRYHKIVL 446


>gi|327200359|gb|AEA36059.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
          Length = 358

 Score =  183 bits (465), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 131/367 (35%), Positives = 197/367 (53%), Gaps = 13/367 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  L + + R   +    F+ G+  +PL    +   + GT +TF
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGRSGTEVTF 60

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
              P+ F     +D   L    +  A+L+  V+   +  +    K     +EE  + GGL
Sbjct: 61  LASPQTF-TMTDYDYGTLEHRLRELAFLNSGVRILLTDKRHSDIK-----QEELLYDGGL 114

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328
           + +++     +  +  +    K EK G    TVE A+ W +   E    + N I   +GG
Sbjct: 115 EAFVRYLDRAKKPLVDKPVAIKGEKDGI---TVEVALWWNDSYHENVLCFTNNIPQRDGG 171

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  YAE +    K  +S+  +D       ILSV + +P+F+ QTK K
Sbjct: 172 THMAGFRAALTRQVTSYAETSGILKKEKVSLQGEDCREGLTAILSVKVPDPKFSSQTKDK 231

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIR 445
           LVS + +  VE+ + +    +L ++P +A  L+ + V         R+ +    RK A+ 
Sbjct: 232 LVSSEVRPVVESLVNEALSTWLEEHPSDARILVGKVVEAAVAREAARKARELTRRKGALD 291

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS+     +ELF+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +
Sbjct: 292 IASLPGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFD 351

Query: 506 KIRNNQQ 512
           K+ ++Q+
Sbjct: 352 KMLSSQE 358


>gi|109452318|dbj|BAE96356.1| DNA gyrase subunit B [Pasteurella pneumotropica]
          Length = 355

 Score =  183 bits (465), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 133/367 (36%), Positives = 201/367 (54%), Gaps = 16/367 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALSD+L +T+ RQ  +  Q +  G P +PL       +  GT + F P P IF  
Sbjct: 1   VSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQAPLTVIGDT-DVSGTTVLFWPSPDIFA- 58

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              FD   L K  +  ++L+  V       ++ AE       + F++ GG++ +++   +
Sbjct: 59  ITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGAE-------DHFHYEGGIQAFVEYLNK 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVA 337
           N++ I  + F    EK G     VE A+ W +  N  +  + N I   +GGTH +G R A
Sbjct: 112 NKNPIHPKPFYFTAEKDGI---GVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD     V I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRSLNNYMESEGLLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454
           VE+A+ +    YL++NP +A  ++  +I  +  R   RK R    RK A+    LPGKLA
Sbjct: 229 VESAMNEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPGKLA 288

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL++VEGDSAGGSAK  R+R  QA+LPL+GKILNV  A  +K+ ++Q++ 
Sbjct: 289 DCQEKDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVG 348

Query: 515 DLVQALG 521
            L+ ALG
Sbjct: 349 TLITALG 355


>gi|198042708|gb|ACH81179.1| GyrB [Vibrio sp. UST001201-014]
          Length = 363

 Score =  183 bits (465), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 129/370 (34%), Positives = 202/370 (54%), Gaps = 14/370 (3%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+++ +T+ R   I +Q +  G P +PL       +K GT+I F P  + F +
Sbjct: 1   VSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQIRFWPSAETFSN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++E        + + F + GG++ ++     
Sbjct: 60  T-EFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KHDHFMYEGGIQAFVDHLNT 112

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ I  +IF   +E++     +VE A+ W +     I  + N I   +GGTH +G R A
Sbjct: 113 NKTPIIEKIFHFNSERED--GISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAA 170

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  
Sbjct: 171 LTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSA 230

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454
           VE+A+ +    +L++NP EA  +   +I+ +  R   RK R    RK A+    LPGKLA
Sbjct: 231 VESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLA 290

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++ 
Sbjct: 291 DCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 350

Query: 515 DLVQALGCRT 524
            L+ ALGC  
Sbjct: 351 TLITALGCGI 360


>gi|327200389|gb|AEA36074.1| DNA gyrase subunit B [Sinorhizobium fredii]
          Length = 358

 Score =  183 bits (465), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 136/367 (37%), Positives = 199/367 (54%), Gaps = 13/367 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  L + + R   I    F+ G+   PL       ++ GT +TF
Sbjct: 1   VSGGLHGVGVSVVNALSVTLKLKIRRAGKIHEMSFTHGVADGPLAITGDAGSETGTEVTF 60

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F     FD A L    +  A+L+  V+   +  +    +          + GGL
Sbjct: 61  LPSEQTFSKT-EFDFATLEHRLRELAFLNSGVRIVLTDKRHSDIRRDE-----MMYDGGL 114

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328
           + ++      +  +  +  + + EK G    TVE A+ W +   E    + N I   +GG
Sbjct: 115 EAFVAYLDRAKKPLVHKPVSIRGEKDGI---TVEVAMWWNDSYHENVLCFTNNIPQRDGG 171

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR I  YA+ +    K  +S+  DD       +LSV + +P+F+ QTK K
Sbjct: 172 THMAGFRGALTRQITSYADTSGITKKEKVSLTGDDCREGLTAVLSVKVPDPKFSSQTKDK 231

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           LVS + +  VE+ + +    +L ++P EA  L+  V+E +  R   RK RE   RK A+ 
Sbjct: 232 LVSSEVRPVVESLVNEALSVWLEEHPSEAKILVGKVVEAAAAREAARKARELTRRKGALD 291

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS+     +E+F+VEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  +
Sbjct: 292 ISSLPGKLADCSERDPAKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 351

Query: 506 KIRNNQQ 512
           K+ ++Q+
Sbjct: 352 KMLSSQE 358


>gi|254055419|gb|ACT64309.1| GryB [Pseudomonas sp. CMR5c]
          Length = 362

 Score =  183 bits (464), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 130/373 (34%), Positives = 197/373 (52%), Gaps = 16/373 (4%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS+EL +TV R   I+ Q +  G+P   ++         GT+I F+P  + 
Sbjct: 1   GVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQERMKIVGD-SETTGTQIHFKPSAET 59

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   F    L K  +  ++L+  V      ++         ++E F + GGL+ +++ 
Sbjct: 60  FKNIH-FSWDVLAKRIRELSFLNSGVGIVLKDER-------TGKEELFKYEGGLRAFVEY 111

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              N++ ++           G     VE A+ W +     +  + N I   +GGTH  G 
Sbjct: 112 LNTNKTAVNQVFHFNVQRDDGI---GVEVALQWNDSFNESLLCFTNNIPQRDGGTHLVGF 168

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + 
Sbjct: 169 RSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEV 228

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451
           +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPG
Sbjct: 229 KTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPG 288

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q
Sbjct: 289 KLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMISSQ 348

Query: 512 QIMDLVQALGCRT 524
           ++  L+ ALGC  
Sbjct: 349 EVGTLITALGCGI 361


>gi|220680506|dbj|BAH10742.1| DNA gyrase subunit B [Nocardia brevicatena]
          Length = 400

 Score =  183 bits (464), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 119/406 (29%), Positives = 196/406 (48%), Gaps = 34/406 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L   +      +SQ +    P      + +   + GT I F PDP++F     F
Sbjct: 1   NALSTRLEAEIKHDGYHWSQTYKDAAPGKL--VQGEPTRETGTTIRFWPDPEVFETTT-F 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDK------------------------EIAEKYGIP 258
           +   + +  Q  A+L+  +    + ++                        E        
Sbjct: 58  NFETVARRLQEMAFLNKGLTIVLTDERVSEAEITDDVVSETAEVPKHAENGEQQPAEPKV 117

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +   +++PGGL+ +++     ++ I + +     +  G     +E A+ W       + +
Sbjct: 118 KTRTYHYPGGLEEFVRHINRTKTPIHNSVVGFTGKGTGH---ELEVAMQWNSGYSESVHT 174

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIR 375
           + NTI T EGGTHE G R ALT  + KYA+  +  +    ++  DD+      I+SV + 
Sbjct: 175 FANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLLKEKDGNLTGDDIREGLAAIVSVKVS 234

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           EP+F GQTKTKL + + +  V+    +   H+   NP +A  +++  +  ++ R+  RK 
Sbjct: 235 EPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQKAVSSAQARVAARKA 294

Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LPLRG
Sbjct: 295 RELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRG 354

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           KI+NV  A  +K+  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 KIINVEKARIDKVLKNNEVQAIITAFGTGIHDEFDIGKLRYHKIVL 400


>gi|117675831|emb|CAL69186.1| DNA gyrase subunit B [Leifsonia poae]
          Length = 359

 Score =  183 bits (464), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 114/361 (31%), Positives = 179/361 (49%), Gaps = 9/361 (2%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           RQ  ++ Q +  G+P +PLE   +  ++ GT ITF P P+ F     FD   L    Q  
Sbjct: 1   RQGNVYRQSYRHGVPQAPLE-MGEASDETGTIITFWPSPETFESV-EFDYDTLRTRFQQM 58

Query: 235 AYLSGRVKTCWSCDKEIAEKYG--IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
           A+L+  ++   + ++   ++     P  + F +  GL  Y+      +            
Sbjct: 59  AFLNKGLRIALTDERPQPDEDDDAEPRSDVFLYEQGLTDYVHYLNSAKKAEVVNEEIISF 118

Query: 293 E-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
           E +    +  +E A+ W       + +Y NTI T EGGTHE G R ALT  + +YA    
Sbjct: 119 ESEDTERKIALEVAMQWTTGYNESVFTYANTINTHEGGTHEEGFRAALTTLVNRYAREKG 178

Query: 351 --NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
              ++  ++  DD+      ++SV + EP+F GQTKTKL + +A+  V+  + D    + 
Sbjct: 179 ILKEKDDNLSGDDVREGLTAVISVKLSEPQFEGQTKTKLGNTEAKAFVQKVVGDRLGDWF 238

Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELF 467
            +NP +A  ++   ++ +  RL  RK RE  R+  +     +PGKL DC       +E+F
Sbjct: 239 DRNPNQAKDIIRKALQAATARLAARKARETARRKGLLEGGGMPGKLKDCQSKDPSISEIF 298

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           IVEGDSAGGSA Q RN   QA+LPLRGKILNV  A  ++   N ++  ++ A G      
Sbjct: 299 IVEGDSAGGSAVQGRNPETQAILPLRGKILNVEKARLDRALANNEVQAMITAFGAGIGED 358

Query: 528 Y 528
           +
Sbjct: 359 F 359


>gi|71833792|emb|CAI94335.1| gyrase B [Helicobacter mustelae]
          Length = 366

 Score =  183 bits (464), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 132/379 (34%), Positives = 203/379 (53%), Gaps = 16/379 (4%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS  L +T+ +   I+ Q+F++GIP + LE   K +   GT I F PD
Sbjct: 1   GLHGVGVSVVNALSKRLIMTIKKNGYIYRQEFAKGIPQTDLEIIGKTKEH-GTTIEFFPD 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            ++      FDA  L+K  +  AYL+  V   +  +K          ++ F+F  GL  +
Sbjct: 60  GEVME-ILEFDAEILIKRFKEMAYLNQNVTLFFKEEK-------TGREQVFHFENGLHQF 111

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHES 332
           ++   + +  IS  I     E+       + +   +   + ++ S+ N I T +GGTHE+
Sbjct: 112 VEDMNK-KPFISPIISFKANEEDTEIEIALAYNEGY---DEKVLSFVNNIRTPDGGTHEA 167

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R  L+R I  Y E      ++   I  +D+    V I+S  I EP+F GQTK KL S 
Sbjct: 168 GFRAGLSRAILNYIEANASAREKDAKIQGEDVREGLVAIISAKIMEPQFEGQTKGKLGSS 227

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
             +  V+    +    +  +NP EA K+++  +  +  R   +K RE   +K ++    L
Sbjct: 228 FVKPIVQKLTFEKLAKFFEENPNEAKKIMQKALLAARGREAAKKARELTRKKDSLSVGTL 287

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC       +E+++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  +  +KI  
Sbjct: 288 PGKLADCQSKDPRESEIYLVEGDSAGGSAKQGRDRVYQAILPLRGKILNVEKSRLDKILK 347

Query: 510 NQQIMDLVQALGCRTRSQY 528
           + +I +++ A GC    ++
Sbjct: 348 SDEIKNMITAFGCGIGEEF 366


>gi|254055399|gb|ACT64299.1| GryB [Pseudomonas aeruginosa]
 gi|254055401|gb|ACT64300.1| GryB [Pseudomonas aeruginosa]
 gi|254055403|gb|ACT64301.1| GryB [Pseudomonas aeruginosa]
 gi|254055405|gb|ACT64302.1| GryB [Pseudomonas aeruginosa]
          Length = 363

 Score =  183 bits (464), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 133/374 (35%), Positives = 202/374 (54%), Gaps = 17/374 (4%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS EL +T+ R N ++ Q +  G+P  PL +  +  +  GT + F+P P+ 
Sbjct: 1   GVGVSVVNALSHELRLTIRRHNKVWEQVYHHGVPQFPLREVGET-DGSGTEVHFKPSPET 59

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   F    L K  +  ++L+  V      ++         ++E F + GGLK +++ 
Sbjct: 60  FSNIH-FSWDILAKRIRELSFLNSGVGILLRDER-------TGKEELFKYEGGLKAFVEY 111

Query: 276 KLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              N++ ++       + E+ G     VE A+ W +     +  + N I   +GGTH +G
Sbjct: 112 LNTNKTAVNEVFHFNVQREEDGV---GVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAG 168

Query: 334 LRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y E     +        DD       I+SV + +P+F+ QTK KLVS +
Sbjct: 169 FRSALTRNLNNYIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLP 450
            +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LP
Sbjct: 229 VKTAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMLSS 348

Query: 511 QQIMDLVQALGCRT 524
           Q++  L+ ALGC  
Sbjct: 349 QEVGTLITALGCGI 362


>gi|254055377|gb|ACT64288.1| GryB [Pseudomonas sp. R14-24-07]
 gi|254055381|gb|ACT64290.1| GryB [Pseudomonas sp. R5-90-07]
 gi|254055385|gb|ACT64292.1| GryB [Pseudomonas fluorescens]
          Length = 362

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 132/373 (35%), Positives = 198/373 (53%), Gaps = 16/373 (4%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS+EL +TV R   I+ Q +  G+P  P++         GT+I F+P  + 
Sbjct: 1   GVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGD-SETTGTQIHFKPSAET 59

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++ 
Sbjct: 60  FKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEY 111

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G 
Sbjct: 112 LNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGF 168

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + 
Sbjct: 169 RSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEV 228

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451
           +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPG
Sbjct: 229 KTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPG 288

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q
Sbjct: 289 KLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQ 348

Query: 512 QIMDLVQALGCRT 524
           ++  L+ ALGC  
Sbjct: 349 EVGTLITALGCGI 361


>gi|220680496|dbj|BAH10737.1| DNA gyrase subunit B [Nocardia arthritidis]
          Length = 399

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 119/405 (29%), Positives = 194/405 (47%), Gaps = 33/405 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L   +      +SQ +   IP      + +   K GT I F  DP+IF     +
Sbjct: 1   NALSSRLEAEIDHDGYHWSQTYKDAIPGKL--IQGEPTKKTGTTIRFWADPEIFETTT-Y 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-----------------------YGIPE 259
           +   + +  Q  A+L+  +    + ++                                +
Sbjct: 58  NFETVARRLQEMAFLNKGLTIKLTDERVSDSDVTDEVVSETAEAPKHAEEGTAPAEHKVK 117

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              +++PGGL+ +++     +  I + +     +  G     +E A+ W       + ++
Sbjct: 118 TRTYHYPGGLEDFVRHINRTKQPIHNSVVGFTGKGTGH---ELEVAMQWNSGYSESVHTF 174

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            NTI T EGGTHE G R ALT  + KYA+  +   ++  ++  DD+      I+SV + E
Sbjct: 175 ANTINTHEGGTHEEGFRAALTTVVNKYAKDKRLIKEKDGNLTGDDIREGLAAIVSVKVGE 234

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F GQTKTKL + + +  V+    +   H+   NP +A  ++   +  ++ R+  RK R
Sbjct: 235 PQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIVNKAVSSAQARVAARKAR 294

Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LPLRGK
Sbjct: 295 ELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGK 354

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           I+NV  A  +K+  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 IINVEKARIDKVLKNNEVQSIITAFGTGIHDEFDIGKLRYHKIVL 399


>gi|327200351|gb|AEA36055.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
          Length = 358

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 132/367 (35%), Positives = 195/367 (53%), Gaps = 13/367 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  L + + R   +    F+ G+  +PL    +   + GT +TF
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGRSGTEVTF 60

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
              P  F     +D   L    +  A+L+  V+   +  +    K     +EE  + GGL
Sbjct: 61  LASPDTF-TMTDYDFGTLEHRLRELAFLNSGVRIVLTDKRHSDIK-----QEELLYDGGL 114

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328
           + +++     +  +  +      EK G    TVE A+ W +   E    + N I   +GG
Sbjct: 115 EAFVRYLDRAKKPLVDKPVAIHGEKDGI---TVEVALWWNDSYHENVLCFTNNIPQRDGG 171

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  YAE +   +   +    +D       ILSV + +P+F+ QTK K
Sbjct: 172 THMAGFRAALTRQMTSYAETSGIMKREKVSLQGEDCREGLTAILSVKVPDPKFSSQTKDK 231

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           LVS + +  VE+ + +    +L ++P +A  L+  V+E +  R   RK RE   R  A+ 
Sbjct: 232 LVSSEVRPVVESLVNEALSTWLEEHPSDAKILVGKVVEAAIAREAARKARELTRRXGALD 291

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS+     +ELF+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +
Sbjct: 292 IASLPGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFD 351

Query: 506 KIRNNQQ 512
           K+ + Q+
Sbjct: 352 KMLSTQE 358


>gi|93004067|emb|CAI94334.2| gyrase B [Helicobacter muridarum]
          Length = 366

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 135/380 (35%), Positives = 214/380 (56%), Gaps = 18/380 (4%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS  L +T+ + N I+ Q+F +GIP++ LE     +   GT I F PD
Sbjct: 1   GLHGVGVSVVNALSKHLIMTIHKNNKIYKQEFKQGIPITELEVTGSTKKH-GTIIEFLPD 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
             I      FD+  L+K  +  AYL+  +   +  +++  +       E F F GGL+ +
Sbjct: 60  SDIME-IIDFDSNILIKRFKEMAYLTHGITIHFHDERDGTK-------ETFSFEGGLRQF 111

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           +     N+  + +++ + + E+  T    +E A+A+ E    ++ S+ N I T +GGTHE
Sbjct: 112 ILDI--NKRNLITDVISFEAEEDETQ---IEIALAYNEGYDEKLLSFVNNIRTPDGGTHE 166

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           SG R  L+R I  Y E      ++ + ++ DD+    VGI+S  I EP+F GQTK KL +
Sbjct: 167 SGFRAGLSRVILNYIESNASAREKDVKVLGDDVREGLVGIISTKIMEPQFEGQTKGKLGN 226

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448
              +   +    +  + +  +NP +A  +++ V+  +  R   +K R+   + T I    
Sbjct: 227 SFVRGITQKLTYEKINKFFEENPTQAKLIMQKVLVAARGREAAKKARDLTRKDTKISVST 286

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADC       +E+++VEGDSAGGSAKQ R+R NQA+LPLRGKILNV  +  + I 
Sbjct: 287 LPGKLADCQSKDPRESEIYLVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKSRIDMIL 346

Query: 509 NNQQIMDLVQALGCRTRSQY 528
            +++I +++ A GC   S++
Sbjct: 347 KSEEIKNMITAFGCGIGSEF 366


>gi|254055369|gb|ACT64284.1| GryB [Pseudomonas sp. R11-45-07]
          Length = 362

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 131/373 (35%), Positives = 197/373 (52%), Gaps = 16/373 (4%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS+EL +TV R   I+ Q +  G+P  P++         GT+I F+P  + 
Sbjct: 1   GVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQEPMKIVGD-SETTGTQIHFKPSAET 59

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++ 
Sbjct: 60  FKNIH-FSWDILAKRIRELSFLNSGVGIILKDERSAKE-------ELFKYEGGLRAFVEY 111

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G 
Sbjct: 112 LNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGF 168

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y E      K  ++   DD       I+SV + + +F+ QTK KLVS + 
Sbjct: 169 RSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDRKFSSQTKDKLVSSEV 228

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451
           +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPG
Sbjct: 229 KTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPG 288

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q
Sbjct: 289 KLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQ 348

Query: 512 QIMDLVQALGCRT 524
           ++  L+ ALGC  
Sbjct: 349 EVGTLITALGCGI 361


>gi|28411337|dbj|BAC57077.1| gyrase B subunit [Pseudoalteromonas atlantica]
          Length = 352

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 126/361 (34%), Positives = 198/361 (54%), Gaps = 15/361 (4%)

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS++L +T+ R+  +  Q +S G+P +PL       +  GT + F P  
Sbjct: 1   LHGVGVSVVNALSEKLTLTIRREGKLHEQTYSMGVPNAPLAIIGDA-DTTGTELRFWPSG 59

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           + F +   F    L K  +  ++L+  V    S ++E        + + F + GG++ ++
Sbjct: 60  ETFTNL-DFHYDILAKRLRELSFLNSGVSIILSDERE------ENKTDHFKYDGGIQAFV 112

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +    N++ +   +F    E++     +VE ++ W +     I  + N I   +GGTH +
Sbjct: 113 EYLNRNKTPVHKGVFHFTHERE-EDGISVEVSMQWNDGFQENIYCFTNNIPQRDGGTHLA 171

Query: 333 GLRVALTRGIKKYA----ELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
           G R ALTR +  Y        + K   +   DD       ++SV + +P+F+ QTK KLV
Sbjct: 172 GFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 231

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447
           S + +  VE A+ + F  +L++NP++A  ++  +I+ +  R   RK R    RK A+   
Sbjct: 232 SSEVKSAVEQAMAEKFSDFLLENPMDAKIVVGKIIDAARAREAARKAREMTRRKGAMDLA 291

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
            LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+
Sbjct: 292 GLPGKLADCQEKDPSLSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 351

Query: 508 R 508
            
Sbjct: 352 L 352


>gi|254055367|gb|ACT64283.1| GryB [Pseudomonas sp. R11-23-07]
 gi|254055371|gb|ACT64285.1| GryB [Pseudomonas sp. R2-7-07]
 gi|254055373|gb|ACT64286.1| GryB [Pseudomonas sp. R4-35-07]
 gi|254055375|gb|ACT64287.1| GryB [Pseudomonas sp. R4-34-07]
          Length = 362

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 132/373 (35%), Positives = 198/373 (53%), Gaps = 16/373 (4%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS+EL +TV R   I+ Q +  G+P  P++         GT+I F+P  + 
Sbjct: 1   GVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQEPMKIVGD-SETTGTQIHFKPSAET 59

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++ 
Sbjct: 60  FKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSAKE-------ELFKYEGGLRAFVEY 111

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G 
Sbjct: 112 LNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGF 168

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + 
Sbjct: 169 RSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEV 228

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451
           +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPG
Sbjct: 229 KTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPG 288

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q
Sbjct: 289 KLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQ 348

Query: 512 QIMDLVQALGCRT 524
           ++  L+ ALGC  
Sbjct: 349 EVGTLITALGCGI 361


>gi|254055379|gb|ACT64289.1| GryB [Pseudomonas sp. R5-89-07]
 gi|254055383|gb|ACT64291.1| GryB [Pseudomonas sp. L1-11-07]
          Length = 362

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 132/373 (35%), Positives = 199/373 (53%), Gaps = 16/373 (4%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS+EL +TV R   I+ Q +  G+P  P++   +     GT+I F+P  + 
Sbjct: 1   GVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SETTGTQIHFKPSAET 59

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++ 
Sbjct: 60  FKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSAKE-------ELFKYEGGLRAFVEY 111

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G 
Sbjct: 112 LNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGF 168

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + 
Sbjct: 169 RSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEV 228

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451
           +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPG
Sbjct: 229 KTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPG 288

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q
Sbjct: 289 KLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQ 348

Query: 512 QIMDLVQALGCRT 524
           ++  L+ ALGC  
Sbjct: 349 EVGTLITALGCGI 361


>gi|220680516|dbj|BAH10747.1| DNA gyrase subunit B [Nocardia carnea]
          Length = 400

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 122/406 (30%), Positives = 195/406 (48%), Gaps = 34/406 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L   V      +SQ +   +P      + +     GT I F  DP IF     +
Sbjct: 1   NALSSRLEAEVDTDGYHWSQTYKDAVPGPL--VQGEPTKATGTTIRFWADPAIFETTT-Y 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDK------------------EIAEKYGIPEKEE-- 262
           +   + +  Q  A+L+  +    + ++                  +  E    P  E   
Sbjct: 58  NFETISRRLQEMAFLNKGLTIVLTDERVSATEVTDEMVSETAEAPKHDEGGEKPAVEHKV 117

Query: 263 ----FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
               +++PGGL+ +++     +  I +   +   +  G     +E A+ W       + +
Sbjct: 118 KARTYHYPGGLEDFVRHINRTKQPIHNSAVSFNGKGPGH---ELEVAMQWNSGYSESVHT 174

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIR 375
           + NTI T EGGTHE G R ALT  + +YA+  +  +    ++  DD+      I+SV + 
Sbjct: 175 FANTINTHEGGTHEEGFRAALTTVVNRYAKEKKLLKDKDGNLTGDDIREGLAAIVSVKVS 234

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  ++   +  ++ RL  RK 
Sbjct: 235 EPQFEGQTKTKLGNTEVKSFVQRACNEHLAHWFEANPADAKTIVNKAVSSAQARLAARKA 294

Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LPLRG
Sbjct: 295 RELVRRKSATDIGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRG 354

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           KI+NV  A  +K+  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 KIINVEKARIDKVLKNAEVQAIITAFGTGIHDEFDIAKLRYHKIVL 400


>gi|327200367|gb|AEA36063.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
          Length = 358

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 130/367 (35%), Positives = 197/367 (53%), Gaps = 13/367 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  L + + R   +    F+ G+  +PL    +   + GT +TF
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGRSGTEVTF 60

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
              P+ F     +D   L    +  A+L+  V+   +  +    K     +EE  + GGL
Sbjct: 61  LASPQTF-TMTDYDYGTLEHRLRELAFLNSGVRILLTDKRHSDIK-----QEELLYDGGL 114

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328
           + +++    ++  + +       EK G    TVE A+ W +   E    + N I   +GG
Sbjct: 115 EAFVRYLDRSKKPLVNTPVAIHGEKDGI---TVEVALWWNDSYHENVLCFTNNIPQRDGG 171

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  YAE +    K  +S+  +D       ILSV + +P+F+ QTK K
Sbjct: 172 THMAGFRAALTRQVTSYAETSGILKKEKVSLQGEDCREGLTAILSVKVPDPKFSSQTKDK 231

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIR 445
           LVS + +  VE+ + +    +L ++P +A  L+ + V         R+ +    RK A+ 
Sbjct: 232 LVSSEVRPVVESLVNEALSTWLEEHPSDARILVGKVVEAAVAREAARKARELTRRKGALD 291

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS+     +ELF+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +
Sbjct: 292 IASLPGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFD 351

Query: 506 KIRNNQQ 512
           K+ ++Q+
Sbjct: 352 KMLSSQE 358


>gi|220680512|dbj|BAH10745.1| DNA gyrase subunit B [Nocardia concava]
          Length = 399

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 122/405 (30%), Positives = 195/405 (48%), Gaps = 33/405 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L   V      ++Q++    P      +     + GT I F PDP+IF     F
Sbjct: 1   NALSTRLEADVDTDGYHWTQEYKDSKPGKL--VQGGATKRTGTTIRFWPDPEIFETTT-F 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSC-----------------------DKEIAEKYGIPE 259
               + +  Q  A+L+  +    +                        D+    +    +
Sbjct: 58  SFETVARRLQEMAFLNKGLTITLTDQRVAEGDVIDEVVSETAEAPKHLDENAPAETPKIK 117

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              +++PGGL+ Y++     ++ I + I     +  G     VE A+ W       + ++
Sbjct: 118 TRTYHYPGGLEDYVKHINRTKTPIHNSIVAFTGKGTGH---EVEVAMQWNSGYSESVHTF 174

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIRE 376
            NTI T EGGTHE G R ALT  + KYA+  +  +    ++  DD+      I+SV I +
Sbjct: 175 ANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKEGNLTGDDIREGLAAIVSVKIAD 234

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F GQTKTKL + + +  V+    +   H+   NP +A  +++  +  ++ R+  RK R
Sbjct: 235 PQFEGQTKTKLGNTEVKSFVQRTCNEHISHWFEANPADAKTIVQKAVSSAQARVAARKAR 294

Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LPLRGK
Sbjct: 295 ELVRRKSATDLGGLPGKLADCRSKDPAKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGK 354

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           I+NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 IINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDIAKLRYHKIVL 399


>gi|118201802|gb|ABK79714.1| DNA gyrase subunit b [Roseovarius nubinhibens]
          Length = 357

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 120/366 (32%), Positives = 186/366 (50%), Gaps = 13/366 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALSD L + + R       +F RG     L+       ++GT + F      F +   +
Sbjct: 1   NALSDWLELRIWRNGKEHVARFERGDTAEHLKVVGDANGRKGTEVRFLASTDTFSNL-EY 59

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L +  +  A+L+  V+     ++        P + E ++ GG+K +++    ++S 
Sbjct: 60  SFETLERRLRELAFLNSGVRIILRDER-----PAEPLETELHYDGGVKEFVKYLDRHKSP 114

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +  E      E+       VE A+ W +     +  + N I   +GGTH +G R ALTR 
Sbjct: 115 MIPEPIFITGERDEI---GVEVAMWWNDSYHETVLPFTNNIPQRDGGTHMAGFRGALTRT 171

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  YA+ +    K  ++   DD       +LSV + +P+F+ QTK KLVS + +  VE  
Sbjct: 172 INNYAQSSGIAKKEKVNFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGL 231

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +  + +  +NP EA  ++  +IE +  R   RK RE   RKTA+    L GKL DCS+
Sbjct: 232 MNEKLNEWFEENPNEAKMIVGKIIEAALAREAARKARELTRRKTAMDVNFLAGKLKDCSE 291

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TELF+VEGDSAGGSA+  R+R  QA+LPL+GKILNV  A  +++  +Q+I +LV 
Sbjct: 292 KDPSKTELFLVEGDSAGGSAQTGRDRGTQAILPLKGKILNVERARFDRMLGSQEIGNLVM 351

Query: 519 ALGCRT 524
           ALG   
Sbjct: 352 ALGTGI 357


>gi|327200363|gb|AEA36061.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
          Length = 358

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 133/367 (36%), Positives = 196/367 (53%), Gaps = 13/367 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  L + + R   +    F+ G+  +PL    +   + GT +TF
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGRSGTEVTF 60

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
              P  F     +D   L    +  A+L+  V+   +  +    K     +EE  + GGL
Sbjct: 61  LASPDTF-TMTDYDFGTLEHRLRELAFLNSGVRIVLTDKRHSDIK-----QEELLYDGGL 114

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328
           + +++     +  +  +      EK G    TVE A+ W +   E    + N I   +GG
Sbjct: 115 EAFVRYLDRAKKPLVDKPVAIHGEKDGI---TVEVALWWNDSYHENVLCFTNNIPQRDGG 171

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  YAE +   +   +    +D       ILSV + +P+F+ QTK K
Sbjct: 172 THMAGFRAALTRQMTSYAETSGIMKREKVSLQGEDCREGLTAILSVKVPDPKFSSQTKDK 231

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           LVS + +  VE+ + +    +L ++P +A  L+  V+E +  R   RK RE   RK A+ 
Sbjct: 232 LVSSEVRPVVESLVNEALSTWLEEHPSDAKILVGKVVEAAIAREAARKARELTRRKGALD 291

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS+     +ELF+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +
Sbjct: 292 IASLPGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFD 351

Query: 506 KIRNNQQ 512
           K+ + Q+
Sbjct: 352 KMLSXQE 358


>gi|254055417|gb|ACT64308.1| GryB [Pseudomonas sp. CMR12a]
          Length = 362

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 130/373 (34%), Positives = 196/373 (52%), Gaps = 16/373 (4%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS+EL +TV R   I+ Q +  G+P   ++         GT+I F+P  + 
Sbjct: 1   GVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQERMKIVGD-SETTGTQIHFKPSAET 59

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++ 
Sbjct: 60  FKNIH-FSWDVLAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEY 111

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              N++ ++           G     VE A+ W +     +  + N I   +GGTH  G 
Sbjct: 112 LNTNKTAVNQVFHFNVQRDDGI---GVEVALQWNDSFNESLLCFTNNIPQRDGGTHLVGF 168

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + 
Sbjct: 169 RSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEV 228

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451
           +  VE  +   F  +L++NP EA  ++  +++ +  R   RK R    RK A+    LPG
Sbjct: 229 KTAVEQEMGKYFSDFLLENPNEAKLVVGKMLDAARAREAARKAREMTRRKGALDIAGLPG 288

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q
Sbjct: 289 KLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQ 348

Query: 512 QIMDLVQALGCRT 524
           ++  L+ ALGC  
Sbjct: 349 EVGTLITALGCGI 361


>gi|324962678|gb|ADY62441.1| gyrase subunit B [Frankia sp. AvcI1]
          Length = 360

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 104/330 (31%), Positives = 159/330 (48%), Gaps = 21/330 (6%)

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           SL  +G + VVDNGRGIPV  HP    +  +E++LTTLHAGGKFD  +Y +SGGLHGVG+
Sbjct: 1   SLLADGAVRVVDNGRGIPVGMHP-TEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHGVGV 59

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L V +     ++ Q +  G   +    K     K GT +TF  DP IF   
Sbjct: 60  SVVNALSTKLDVEIQVDGHVWFQPY-VGTRPAAPLVKTGTTKKTGTSVTFWADPTIFET- 117

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             +    L +  Q  A+L+  +      ++          +  + +  GL  ++      
Sbjct: 118 TEYKFETLSRRLQEMAFLNKGLSITLIDER-----PEERLEVTYKYTNGLVDFVAHLNAT 172

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  I   + + +++  G      E A+ W       + ++ NTI T EGGTHE G R AL
Sbjct: 173 KDAIHRSVISLESKGVGI---EAELAMQWNAGYSESVYTFANTINTHEGGTHEEGFRAAL 229

Query: 339 TRGIKKYAELTQNKRAISI---------ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           T  +  YA+     + +             DD+      I+SV + +P+F GQTKTKL +
Sbjct: 230 TSAVNAYAKDQNLLKPVKAGAKSGDERLSGDDIREGLTAIISVKLAQPQFEGQTKTKLGN 289

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLL 419
            +A++ V+         +   N  EA  ++
Sbjct: 290 TEAKKFVQEMCYSALKDWFEVNRTEARAIV 319


>gi|254055409|gb|ACT64304.1| GryB [Burkholderia cepacia]
          Length = 374

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 135/385 (35%), Positives = 201/385 (52%), Gaps = 28/385 (7%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKVRNKR 203
           GVG+S VNALS  L +TV R       +F RG+             +SP+       N R
Sbjct: 1   GVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLEVVDGVEVSPMLVTGDTEN-R 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E         F
Sbjct: 60  GTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD-------F 111

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            F GG+K +++   + ++ +   +F    EK G     VE A+ W +     +  + N I
Sbjct: 112 AFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGV---GVEVAMQWNDSYNENVLCFTNNI 168

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + EP+F+
Sbjct: 169 PQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFS 228

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440
            QTK KLVS + +  VE  +    + +L++ PI+A  +   ++E +  R   RK RE+ R
Sbjct: 229 SQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTR 288

Query: 441 KTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           +   +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+LNV
Sbjct: 289 RKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 348

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT 524
             A  +K+ +++QI+ LV ALGC  
Sbjct: 349 EKARYDKLLSSEQIVTLVTALGCGI 373


>gi|148762443|dbj|BAF63923.1| DNA gyrase subunit B [Virgibacillus sp. IVG2-1]
          Length = 325

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 110/336 (32%), Positives = 172/336 (51%), Gaps = 15/336 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG SV NALS  L V V R N I   +F +G+P   ++   +  +  GT +
Sbjct: 1   YKVFGGLHGVGASVANALSSSLEVYVHRDNNIHFLRFEKGVPQGEIKVIGET-DITGTIV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P P IF +   ++   L++  +  A+L+  +       +   E         + + G
Sbjct: 60  HFTPAPTIFDETTEYNFDTLVQRLRELAFLNKGLTITIEDKRTDKE------PVSYCYEG 113

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+ +Y++   + + ++    F  + E +G     VE A+ + +     + S+ N I T E
Sbjct: 114 GICSYVEFINQTKEVLHEP-FYAEGEDQGI---AVEIALQYNDGFASNLYSFANNIHTYE 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTHE+G +  LTR I  YA      +    ++  +D+      I+SV    P+F GQTK
Sbjct: 170 GGTHEAGFKTGLTRVINDYARKNNLFKENDPNLSGEDVREGLTAIVSVKHPNPQFEGQTK 229

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
           TKL + + +   ++   + F  +L +NP  A  ++E  +  S  R   +K RE   RK A
Sbjct: 230 TKLGNSEVRTVTDSVFSELFSKFLFENPTVAKIIVEKGLMASRARDAAKKARELTRRKGA 289

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADC+   A  +EL+IVEGDSAGGSAK
Sbjct: 290 LEVSNLPGKLADCASKDASISELYIVEGDSAGGSAK 325


>gi|207107926|dbj|BAG71975.1| DNA gyrase subunit B [Gordonia terrae]
          Length = 411

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 124/416 (29%), Positives = 200/416 (48%), Gaps = 38/416 (9%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           GISVVNALS ++ + +      + Q +S   P +   ++     K GT + F PDP+IF 
Sbjct: 1   GISVVNALSTKVELEIQNDGYNWEQTYSYAKPGAL--EQGSATRKTGTTVRFWPDPEIFT 58

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE--------------- 262
           +   F+A  + +  Q  A+L+  +    +  +  A +       +               
Sbjct: 59  ETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEPPGDADGDEDGGSTEAAEVVKSE 118

Query: 263 --------------FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
                         +++P GL  Y++     +  I + +     +  G     VE A+ W
Sbjct: 119 EEKAAAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGFNAKGDGH---EVEIAMQW 175

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
                  + ++ NTI T EGGTHE G R ALT  + KYA   +   ++   +  DD+   
Sbjct: 176 NAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLLKEKDGKLTGDDIREG 235

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP EA  +++  ++ 
Sbjct: 236 LAAVISVKVSDPQFEGQTKTKLGNTEVKGFVQRTCNEHLGHWFEANPAEAKIIVKKAVDS 295

Query: 426 SE-ERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           S+     RR +  V RKTA     LPGKLADC  N     E++IVEGDSAGGSAK  R+ 
Sbjct: 296 SQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSAGGSAKSGRDS 355

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 356 MYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDISKLRYHKIVL 411


>gi|71833774|emb|CAI94326.1| gyrase B [Helicobacter bizzozeronii]
          Length = 366

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 135/374 (36%), Positives = 205/374 (54%), Gaps = 18/374 (4%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS +L +T+ R   IF Q+F++GIP +PLE     + + GT I F PD
Sbjct: 1   GLHGVGVSVVNALSTKLIMTIKRGGQIFRQEFAKGIPTTPLEVVGTTKEQ-GTSIEFFPD 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P I      FD++ L K  Q  AYL+  V   +       +       E +++  GLK +
Sbjct: 60  PSIMEVV-AFDSSVLQKRFQEMAYLNHGVTIHFEDQPNQIK-------ETYHYTEGLKQF 111

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           +    +N  +     F+ + E        VE A+A+ E    ++ S+ N+I T EGGTHE
Sbjct: 112 ILDTNKNPLISDVIAFSAQAED-----MEVEIALAYNEGYSEQMFSFVNSIRTPEGGTHE 166

Query: 332 SGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           SG R+ L+R I  Y +   N  ++   ++ +D+    + ++S  I EP+F GQTK KL S
Sbjct: 167 SGFRMGLSRAILNYIQENANAREKEAGVVQEDIKEGLLAVISARILEPQFEGQTKAKLGS 226

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448
              +  V   + +    +  +NP  A  +++  +  ++ R   +K +E   +K  +    
Sbjct: 227 SFVRPVVAKLVYEKMAKFFEENPSVARAIMQKALLAAKGREAAKKAKELTRKKDNLSVGT 286

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADC        E+++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  +   KI 
Sbjct: 287 LPGKLADCQSKDPKECEIYLVEGDSAGGSAKQGRDRVFQAILPLRGKILNVEKSHLSKIL 346

Query: 509 NNQQIMDLVQALGC 522
            +++I +++ A GC
Sbjct: 347 KSEEIKNMITAFGC 360


>gi|307343832|emb|CBJ19521.1| gyrase B subunit [Micromonospora sp. CR18]
          Length = 369

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 106/375 (28%), Positives = 187/375 (49%), Gaps = 9/375 (2%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           + V + +   ++ Q++    P    +   +  ++ G+ ++F PD  +F     FD   + 
Sbjct: 1   MAVEIHKDGFVWRQQYHNSKPTPLEK--GETTDRTGSAVSFWPDADVFETV-DFDFQTIY 57

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           +  Q  A+L+  +      ++    + G   +  F + GG+  +++    +++ I   + 
Sbjct: 58  RRLQEMAFLNRGLTIHLLDERVSDGEEGKQREVTFLYKGGIADFVRHLNASKNPIHKTVV 117

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
               E++G    +VE A+ W E     + ++ NTI T EGGTHE G R ALT  + +Y  
Sbjct: 118 EFGAEEEG---MSVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRAALTSVVNRYGT 174

Query: 348 LTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
             +  +    +  +D+      I+SV +  P+F GQTKTKL +   +  V+    +    
Sbjct: 175 DKKLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNEWLVD 234

Query: 407 YLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTE 465
           +  +NP EA  +++            ++ ++   RK+ +    +PGKLADC       +E
Sbjct: 235 WFDRNPAEAKTIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESE 294

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
           +FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG    
Sbjct: 295 VFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGIH 354

Query: 526 SQYREEDLRYEKVII 540
             +  E LRY K+++
Sbjct: 355 DDFDIEKLRYHKILL 369


>gi|112732544|dbj|BAF03049.1| DNA gyrase subunit B [Pasteurella pneumotropica]
          Length = 354

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 132/366 (36%), Positives = 197/366 (53%), Gaps = 16/366 (4%)

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALSD+L +T+ RQ  +  Q +  G P  PL          GT + F P P IF   
Sbjct: 1   SVVNALSDKLQLTIRRQGHVHEQFYHLGEPQMPLTIIGDT-EATGTSVRFWPSPDIFA-I 58

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             FD   L K  +  ++L+  V       ++  E       + F++ GG++ +++   +N
Sbjct: 59  TTFDYKILAKRLRELSFLNSGVSIRLVDKRDGTE-------DHFHYEGGIQAFVEYLNKN 111

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  + F    EK G     VE A+ W +  N  +  + N I   +GGTH +G R AL
Sbjct: 112 KNPIHPKPFYFTAEKDGI---GVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGAL 168

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y E      K  ++   DD     V I+SV + +P+F+ QTK KLVS + +  V
Sbjct: 169 TRSLNSYMENEGLLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAV 228

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+A+ +    YL++NP +A  ++  +I  +  R   RK R    RK A+    LPGKLAD
Sbjct: 229 ESAMNEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPGKLAD 288

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAK  R+R  QA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 289 CQEKDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGT 348

Query: 516 LVQALG 521
           L+ ALG
Sbjct: 349 LITALG 354


>gi|19909717|dbj|BAB87054.1| DNA gyrase subunit B [Variovorax paradoxus]
          Length = 276

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 88/283 (31%), Positives = 138/283 (48%), Gaps = 31/283 (10%)

Query: 97  IEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153
           I V++  +  ++V DNGRGIP          P +S  EI LT LHAGGKF+ ++Y++SGG
Sbjct: 1   IVVTIHSDNSISVTDNGRGIPTGVKMDDKHEPKRSAAEIALTELHAGGKFNQNSYKVSGG 60

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFS------------RGIPLSPLEKKEKVRN 201
           LHGVG+S VNALS  L + V R+  I   +FS             G+ +SP++      +
Sbjct: 61  LHGVGVSCVNALSVMLRLVVRREGKIHELEFSRGFVQDRLLETVNGVEVSPMKIIGDT-D 119

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           KRGT + F PD +IF +   F    L K  +  ++L+  V+     ++   E        
Sbjct: 120 KRGTEVHFLPDTEIFKENNDFHYEILSKRLRELSFLNNGVRIRLKDERSGKEDD------ 173

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT-------HRGTVEWAIAWCEEN-P 313
            F   GG++ +++   + ++++    F  + EK              VE A+ W      
Sbjct: 174 -FSGAGGVRGFVEFINKGKTVLHPNSFYAEGEKPADTYGGIPGTHIGVEVAMQWNSGYNE 232

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
           ++  + N I   +GGTH +GLR A+TR I KY E  +  +   
Sbjct: 233 QVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEENELAKKAK 275


>gi|32813238|emb|CAE11801.1| topoisomerase II [Leishmania panamensis]
          Length = 345

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 97/224 (43%), Gaps = 16/224 (7%)

Query: 469 VEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
            EGDSA          ++R    V PLRGK LNV  A  +K+   ++I  +++ +G   R
Sbjct: 1   TEGDSAKTLCTAGLAVKDRDYFGVFPLRGKPLNVREASLKKLAACEEIQCVMKIMGLDIR 60

Query: 526 SQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ-KHLFLISPPLFRIT 583
            +Y   D LRY  ++IM+D D DG+HI  LL+ F +    +L+     L     P+ +  
Sbjct: 61  QKYENTDGLRYGHLMIMSDQDHDGSHIKGLLINFIHCFWPNLLRVPGFLQQFITPIVKAR 120

Query: 584 -QGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638
            +G     K++         +  +    +     +I  +KGLG   A + +E   + ++ 
Sbjct: 121 PKGRGGAGKAISFFSMPDYFEWKKAIGDN-LSNYQIRYYKGLGTSGAEEGREYFENIDRH 179

Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682
            L  VE         +    +      + ++R ++I    + ++
Sbjct: 180 RLSFVE-----QDQSEEDRIVMAFGKDRVEDRKEWITNFKTNVN 218


>gi|327200347|gb|AEA36053.1| DNA gyrase subunit B [Agrobacterium vitis]
 gi|327200349|gb|AEA36054.1| DNA gyrase subunit B [Agrobacterium vitis]
          Length = 358

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 130/367 (35%), Positives = 199/367 (54%), Gaps = 13/367 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS +L + + R   +    F+ G+  +PL      + + GT ITF
Sbjct: 1   VSGGLHGVGVSVVNALSVKLSMKIRRHGKVHEMSFTHGVADAPLAVTGDYQGRSGTEITF 60

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F     FD   L    +  A+L+  V+   +  ++   +     +EE  + GGL
Sbjct: 61  LPSTETFTQV-EFDYGTLEHRLRELAFLNSGVRILLTDKRKSDIR-----QEEMLYDGGL 114

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328
           + +++    ++  + S     + EK G    TVE A+ W +   E    + N I   +GG
Sbjct: 115 EAFVRYLDRSKKPLVSNPVAIRGEKDGI---TVEVAMWWNDSYHENVLCFTNNIPQRDGG 171

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR I  YA+ +    K  +++  +D       +LSV + +P+F+ QTK K
Sbjct: 172 THMAGFRGALTRQITSYADSSGITKKEKVTLQGEDCREGLSAVLSVKVPDPKFSSQTKDK 231

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIR 445
           LVS + +  VE+ + +    +  ++P EA  L+ + V         R+ +    RK A+ 
Sbjct: 232 LVSSEVRPVVESLVNEALSTWFEEHPTEAKILVGKVVEAAVAREAARKARELTRRKGALD 291

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS+     +ELF+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +
Sbjct: 292 IASLPGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRERQAILPLRGKILNVERARFD 351

Query: 506 KIRNNQQ 512
           K+ ++Q+
Sbjct: 352 KMLSSQE 358


>gi|324962654|gb|ADY62429.1| gyrase subunit B [Frankia sp. HrI1]
          Length = 360

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 103/335 (30%), Positives = 160/335 (47%), Gaps = 21/335 (6%)

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           SL  +G + V DNGRGIPV  HP    +  +E++LTTLHAGGKFD  +Y +SGGLHGVG+
Sbjct: 1   SLLADGGVRVTDNGRGIPVGEHP-TEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHGVGV 59

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L V +     ++ Q +  G   +    K     K GT +TF  DP IF   
Sbjct: 60  SVVNALSTKLDVEIQVDGHVWFQPY-VGTRPAAPLVKTGTTKKTGTSVTFWADPTIFET- 117

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             +    L +  Q  A+L+  +      ++          +  + +  GL  ++      
Sbjct: 118 TEYKFETLSRRLQEMAFLNKGLSITLIDER-----PEERLEVTYKYTNGLVDFVAHLNAT 172

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  I   + + +++  G      E A+ W       + ++ NTI T EGGTHE G R AL
Sbjct: 173 KDAIHRSVISLESKGIGI---EAELAMQWNAGYSESVYTFANTINTHEGGTHEEGFRAAL 229

Query: 339 TRGIKKYAELTQNKRAISI---------ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           T  +  YA+     + +             DD+      I+SV + +P+F GQTKTKL +
Sbjct: 230 TSAVNAYAKDQNLLKPVKAGSKNSDERLSGDDIREGLTAIISVKLAQPQFEGQTKTKLGN 289

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            +A++ V+         +   N  EA  ++   ++
Sbjct: 290 TEAKKFVQEMCYSALKDWFEVNRTEARSIVSKALD 324


>gi|244537694|emb|CAX15421.1| gyrase B [Micromonospora pattaloongensis]
          Length = 369

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 111/373 (29%), Positives = 183/373 (49%), Gaps = 8/373 (2%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V + +   ++ Q++    P    +   +  ++ G+ + F PDP IF     F    + + 
Sbjct: 2   VEIHKTGFVWRQQYQNSKPSPLDK--GEPTDRTGSAVAFWPDPDIFETV-EFSFETIYRR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            Q  A+L+  +      ++   E+ G P +  F + GG+  +++    +++ I   +   
Sbjct: 59  LQEMAFLNRGLTIRLRDER-AREEDGEPRQVTFCYAGGIADFVRHLNASKNPIHKSVVEF 117

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             E       +VE A+ W E     + ++ NTI T EGGTHE G R ALT  I KY    
Sbjct: 118 GAE-DPEEGMSVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRAALTSVINKYGADK 176

Query: 350 QNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
           +  +    +  +D+      I+SV +  P+F GQTKTKL +   +  V     +    +L
Sbjct: 177 KLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVLRICNEWLVDWL 236

Query: 409 VQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
            +NP EA  ++ +            + ++   RK+ +    +PGKLADC       +E+F
Sbjct: 237 DRNPAEAKTIITKASQAARARIAAAQARKLARRKSLLESGSMPGKLADCQSTDPRESEVF 296

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           IVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG      
Sbjct: 297 IVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGIHDD 356

Query: 528 YREEDLRYEKVII 540
           +  E LRY K+++
Sbjct: 357 FDIEKLRYHKILL 369


>gi|220680181|dbj|BAH10709.1| DNA gyrase subunit B [Nocardia exalbida]
          Length = 398

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 119/404 (29%), Positives = 193/404 (47%), Gaps = 33/404 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L   +      +SQ +   IP      + +   K GT I F  DP+IF     +
Sbjct: 1   NALSSRLEAEIDHDGYHWSQTYKDAIPGKL--IQGEPTKKTGTTIRFWADPEIFETTT-Y 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-----------------------YGIPE 259
           +   + +  Q  A+L+  +    + ++                                +
Sbjct: 58  NFETVARRLQEMAFLNKGLTIKLTDERVSDSDVTDEVVSETAEAPKHAEEGTAPAEHKVK 117

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              +++PGGL+ +++     +  I + +     +  G     +E A+ W       + ++
Sbjct: 118 TRTYHYPGGLEDFVRHINRTKQAIHNSVVGFTGKGTGH---ELEVAMQWNSGYSESVHTF 174

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            NTI T EGGTHE G R ALT  + KYA+  +   ++  ++  DD+      I+SV + E
Sbjct: 175 ANTINTHEGGTHEEGFRAALTTVVNKYAKDKRLIKEKDGNLTGDDIREGLAAIVSVKVGE 234

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F GQTKTKL + + +  V+    +   H+   NP +A  ++   +  ++ R+  RK R
Sbjct: 235 PQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIVNKAVSSAQARVAARKAR 294

Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LPLRGK
Sbjct: 295 ELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGK 354

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
           I+NV  A  +K+  N ++  ++ A G     ++    LRY K++
Sbjct: 355 IINVEKARIDKVLKNNEVQSIITAFGTGIHDEFDISKLRYHKIV 398


>gi|71833750|emb|CAI94314.1| gyrase B [Helicobacter canis]
          Length = 366

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 131/379 (34%), Positives = 201/379 (53%), Gaps = 16/379 (4%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS +L +T+ +   I+ Q+F+ GIP S LE   K     GT I F PD
Sbjct: 1   GLHGVGVSVVNALSKKLIMTIHKNGNIYRQEFAAGIPTSELEIIGKTNK-NGTIIEFFPD 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
             I      FD   L +  +  AYL+  +   +  ++          +E ++F  GL  +
Sbjct: 60  DSIMEVI-EFDKDVLTRRFKEMAYLNQSLTIDFIDERS-------GFRESYHFENGLMQF 111

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHES 332
           +Q   + R  I+S I+    +++      + +   +   +  + S+ N I T +GGTHE+
Sbjct: 112 IQDINK-RPAIASTIYFKGADQETEMEIALVYNEGF---DENVLSFVNNIRTPDGGTHEA 167

Query: 333 GLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R  L+R I  Y E   N  ++ I +  DD+    V I+S  I +P+F GQTK KL S 
Sbjct: 168 GFRAGLSRVIMNYIEANANAREKDIKVTGDDVREGLVAIISTRIIDPQFEGQTKGKLGSS 227

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
             +  ++    +    Y  +NP +A  +++  +  +  R   +K RE   +K       L
Sbjct: 228 FIKPIIQKLTTERLSKYFEENPNDAKAIIQKALLAARGREAAKKARELTRKKENFSVGTL 287

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC       +E+++VEGDSAGGSAKQAR+R  QA+LPLRGKILNV  +  +KI  
Sbjct: 288 PGKLADCQSKDPTESEIYLVEGDSAGGSAKQARDRLYQAILPLRGKILNVEKSRLDKILK 347

Query: 510 NQQIMDLVQALGCRTRSQY 528
           +++I +++ A GC     +
Sbjct: 348 SEEIKNMITAFGCGIGEDF 366


>gi|220680546|dbj|BAH10762.1| DNA gyrase subunit B [Nocardia nova]
          Length = 398

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 118/404 (29%), Positives = 201/404 (49%), Gaps = 32/404 (7%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  +   + R    +SQ++    P   ++   +  ++ GT   F  DP +F     +
Sbjct: 1   NALSSRMVTEIDRDGFHWSQEYKDAKPGKLVK--GEPTDRTGTTQRFWADPDVFETTT-Y 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDK------------------EIAEKYGIPEKE--- 261
           +   + +  Q  A+L+  +    + ++                  +  E    PE +   
Sbjct: 58  NFETISRRLQEMAFLNKGLTITLTDERVSDAEVTDEVVSETAEAPKHDEGAAAPEHKVKT 117

Query: 262 -EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
             +++PGGL+ +++     +  I + + +  ++  G     +E A+ W       + ++ 
Sbjct: 118 RTYHYPGGLEDFVKHINRTKQPIHNTVVSFTSKGTGH---ELEVAMQWNSGYSESVHTFA 174

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREP 377
           NTI T EGGTHE G R ALT  + KYA+  +  +    ++  DD+      I+SV + EP
Sbjct: 175 NTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDDIREGLAAIVSVKVSEP 234

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F GQTKTKL + + +  V+    +   H+   NP +A  +++  +  ++ R+  RK RE
Sbjct: 235 QFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQKAVSSAQARVAARKARE 294

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
            V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LPLRGKI
Sbjct: 295 LVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKI 354

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +NV  A  +K+  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 INVEKARIDKVLKNNEVQSIITAFGTGIHDEFDISKLRYHKIVL 398


>gi|71833782|emb|CAI94330.1| gyrase B [Helicobacter felis]
          Length = 364

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 135/372 (36%), Positives = 206/372 (55%), Gaps = 16/372 (4%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS +L +T+ R   I+ Q+F +GI  +PLE     +  RGT I F PD
Sbjct: 1   GLHGVGVSVVNALSIKLIMTIYRDGQIYRQEFEKGIATTPLEVVGTTKK-RGTTIEFFPD 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P+I      FD+  L +  Q  AYL+ ++   +               E +++  GLK +
Sbjct: 60  PEIMEVV-QFDSGVLKRRFQEMAYLNNKITLEFHDQ-------PAQVHESYHYQDGLKQF 111

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHE 331
           +      ++ + SEI     + +G     VE A+A+ E   E   S+ N I T EGGTHE
Sbjct: 112 I--IDTQKTPLISEIIAFSAQVEG---MEVEVALAYNESYEEQTFSFVNNIRTIEGGTHE 166

Query: 332 SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           SG ++ L++ I  Y + + ++   S++ +D+      I+S+ + +P+F GQTK KL S  
Sbjct: 167 SGFKMGLSKAILSYIQESNSREGSSVVQEDVREGLSAIISLKLLDPQFEGQTKAKLGSSF 226

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  +   + +    Y  +NP  A  +++ V+  +  R   +K RE   +K ++    LP
Sbjct: 227 VRPIIAKLVYEKVAKYFEENPSIAKAIVQKVLLAARGREAAKKAREITRKKDSLSVGTLP 286

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC        EL++VEGDSAGGSAKQ R+R+ QA+LPLRGKILNV  A   KI  +
Sbjct: 287 GKLADCQSKDPKECELYLVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKAHLGKILKS 346

Query: 511 QQIMDLVQALGC 522
           ++I +++ A GC
Sbjct: 347 EEIKNMITAFGC 358


>gi|134026046|gb|AAI35319.1| LOC100038293 protein [Xenopus (Silurana) tropicalis]
          Length = 343

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 66/368 (17%), Positives = 129/368 (35%), Gaps = 55/368 (14%)

Query: 12  LPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE 71
             P     ++ + K  +  +       S    Y          LE + +RP  YIG  + 
Sbjct: 3   TDPLQPLENKTVGKVKKSDN----KRLSVERIYQKK-----TQLEHILLRPDTYIGSVEP 53

Query: 72  ----------------------KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFL 107
                                   L+ +F E++ NA D        + I+++++     +
Sbjct: 54  VTQQMWVFDEDEGLNCRDVTFVPGLYKIFDEILVNAADNKQRDPTMSCIKITINPESNTV 113

Query: 108 TVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSD 167
           +V +NG+GIPV  H K        +I   L     +D+   +++GG +G G  + N  S+
Sbjct: 114 SVWNNGKGIPVVEH-KVEKVFVPALIFGQLLTSSNYDDDQKKVTGGRNGYGAKLCNIFSN 172

Query: 168 ELHVT--VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFD 223
           +  V         +F Q ++  +  +   K +    +  T ITF+PD   F  +      
Sbjct: 173 KFTVETACREYKKVFKQTWTDNMSDAADAKIKPFDGEDYTCITFQPDLSKFKMQILDKDI 232

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
            A + +     A  S  VK   +  +                  G ++Y+   L+N+   
Sbjct: 233 VALMSRRAYDVAGSSKGVKVFLNGKRLPI--------------SGFRSYVDLYLKNKLDE 278

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIK 343
           +        E         E  +   E+  +  S+ N+I T +GG H   +   +   + 
Sbjct: 279 TGNPLKVMHEL---VNDRWEICLTMSEKGFQQISFVNSIATTKGGRHVDYVADQIIAKLI 335

Query: 344 KYAELTQN 351
           +  +  + 
Sbjct: 336 EVVKKKKK 343


>gi|171702756|dbj|BAG16346.1| DNA gyrase subunit B [Flavobacterium sp. GMY-6]
          Length = 356

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 127/360 (35%), Positives = 193/360 (53%), Gaps = 9/360 (2%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            I+ Q++ RG  + P+++  +  +KRGT + F+PD  IF     +    L    +  A+L
Sbjct: 2   KIYEQEYERGKAVYPVKQVGET-DKRGTTVWFKPDGTIFQQTLEYSYDTLAARMRELAFL 60

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +    +  +E  +K G    E F+   GLK +++    NR      I    + +   
Sbjct: 61  NKGITITLTDKREQ-DKDGKDVGETFHSKEGLKEFVKFLDGNR---VPIIGHVISMENDK 116

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRA 354
               VE A+ + +     I SY N I T EGGTH  G R+ LTR +KKYA+ +    K  
Sbjct: 117 REIPVEVALIYNDSYSENIFSYVNNINTHEGGTHLQGFRMGLTRTLKKYADASGLLEKLK 176

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             I  DD       I+SV + EP+F GQTKTKL + +    V  A+ +  ++YL +NP +
Sbjct: 177 FEISGDDFREGLTAIVSVKVSEPQFEGQTKTKLGNREVVSPVSQAVAEMLENYLEENPND 236

Query: 415 ATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  +++ VI  ++ R   +K RE+  RKT +    LPGKL+DCS+      E+F+VEGDS
Sbjct: 237 AKIIVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPTKCEIFLVEGDS 296

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGG+AKQ R+R+ QA+LPLRGKILNV  A   K+  N++I ++  ALG    +    + L
Sbjct: 297 AGGTAKQGRDRAFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTVGTAEDSKAL 356


>gi|6644319|gb|AAF21004.1|AF208253_1 DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 384

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 134/386 (34%), Positives = 202/386 (52%), Gaps = 16/386 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG S VNAL D+L +T+ R   ++ Q +  G P +PL++        GT +   
Sbjct: 1   SGGLHGVGDSEVNALFDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIADAT-TTGTEVRSW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P P IF D   F    L K  +  ++L+  V      +++  E         F + GG+K
Sbjct: 60  PSPTIFSDTL-FHYEILAKRMRELSFLNSGVCIRLMDERDGRE-------AHFCYEGGIK 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ +  ++F   TE+ G     VE A+   +     +  + N I   +GGT
Sbjct: 112 AFVEYMNQNKTPMHPKVFHFTTEQDGI---GVEVAMQCNDAYQEGVYCFTNNIAEPDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  GLR ALTR +  Y +      K   +          + ++SV +  P+F+ QTK KL
Sbjct: 169 HLVGLRTALTRTLNSYMDKEDYSKKAKSAASGQQRREGLIAVISVKVPGPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
           VS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+  
Sbjct: 229 VSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDI 288

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 289 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 348

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED 532
           + ++  +  L+ AL C         D
Sbjct: 349 MISSHPVGTLITALDCGIGRDEYNPD 374


>gi|323364329|gb|ADX42734.1| DNA gyrase subunit B [Bacillus beijingensis]
          Length = 349

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 117/358 (32%), Positives = 187/358 (52%), Gaps = 13/358 (3%)

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225
           S+   VTVAR   +    F RG+    L    K     GT++ F+ DP+IF +   ++  
Sbjct: 1   SERTEVTVARDGELHFIAFERGLVAEELRVTGKAEE-TGTQVRFKADPEIFTETTVYEYD 59

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
            L    Q  AYL+  ++   + ++          ++ +++ GG+K+Y+Q   E++  I  
Sbjct: 60  ILAHRLQELAYLNRGIRITLADER-----GEEVREDAYHYEGGIKSYVQHINEDKEPIHE 114

Query: 286 EIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKK 344
           E    + E+ G    +VE A+ +       + S+ N I T EGGTHESG + ALTR I  
Sbjct: 115 EPIFLEGERDGI---SVEVAMQYNAGYASNLFSFANNINTYEGGTHESGFKTALTRVIND 171

Query: 345 YAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRD 402
           YA      +    ++  +D       I+S+   +P+F GQTKTKL + +  + V +   +
Sbjct: 172 YARKNGLLKDNEANLSGEDAREGLTAIISIKHPDPQFEGQTKTKLGNSEVSQIVNSLFSE 231

Query: 403 PFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIA 461
            F+ +L++NP  A  ++E  ++        ++ +    RK+ +    LPGKL+DCS    
Sbjct: 232 GFERFLMENPTSARMIVEKGLMAARARVAAKKARELTRRKSVLEISNLPGKLSDCSSRDP 291

Query: 462 HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
             +EL+IVEGDSAGGSAK  R+R  QA+LPLRGKILNV  A   +I +N +I  ++ A
Sbjct: 292 AISELYIVEGDSAGGSAKNGRDRHFQAILPLRGKILNVEKANINRILSNAEIRMMITA 349


>gi|66474605|gb|AAY46872.1| GyrB [Aeromonas sp. ym4]
          Length = 371

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 134/382 (35%), Positives = 207/382 (54%), Gaps = 16/382 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGV +SVV ALSD+L +T+ R   ++ Q +  G P +PL+         GT + F P P 
Sbjct: 1   HGVRVSVVPALSDKLLLTIRRDGHVYEQTYHLGEPQAPLKLIGDSTGP-GTEVRFWPRPA 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFSDTL-FHYYILAKRLREVSFLNSGVSIRLRDERDGRE-------AHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS +
Sbjct: 169 FRTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE+ R+   +    LP
Sbjct: 229 VKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGPLDIAGLP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 348

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALGC +       D
Sbjct: 349 QEVGTLITALGCGSGRDEYNPD 370


>gi|32364172|gb|AAP80234.1| GyrB [Gallibacterium anatis]
          Length = 370

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 139/382 (36%), Positives = 211/382 (55%), Gaps = 17/382 (4%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALSD+L +T+ R+  +  Q +  G P +PL    +  +K GT + F P P IF D   F
Sbjct: 1   NALSDKLQLTIRREGHVHEQFYHLGEPQAPLAVIGE-SDKTGTTVRFWPSPSIFSDT-EF 58

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  ++L+  V       +           + F++ GG++ +++   +N++ 
Sbjct: 59  QYEVLSKRLRELSFLNSGVSIRLIDLR-------TNRSDHFHYEGGIQAFVEYLNKNKNP 111

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           I S+ F   TEK G     VE A+ W +   E    + N I   +GGTH +G R A+TR 
Sbjct: 112 IHSKPFYLNTEKDGI---GVEVALQWNDGFQENLYCFTNNIPQRDGGTHLAGFRAAMTRT 168

Query: 342 IKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +  Y E      K  +++  DD     V I+SV + +P+F+ QTK KLVS + +  VE+A
Sbjct: 169 LNNYMEKEGYNKKSKVAMAGDDAREGLVAIVSVKVPDPKFSSQTKDKLVSSEVKSVVESA 228

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458
           + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLADC +
Sbjct: 229 VGERLQEYLLENPNDAKIIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQE 288

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +++ ++Q++  L+ 
Sbjct: 289 RDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDRMLSSQEVAALIT 348

Query: 519 ALGCRT-RSQYREEDLRYEKVI 539
           ALGC   R +Y  + LRY  +I
Sbjct: 349 ALGCGIGRDEYNPDKLRYHSII 370


>gi|220680514|dbj|BAH10746.1| DNA gyrase subunit B [Nocardia crassostreae]
          Length = 399

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 124/405 (30%), Positives = 201/405 (49%), Gaps = 33/405 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L   V      ++Q++    P    +   +   + GT I F PDP+IF     F
Sbjct: 1   NALSTRLEAEVDHDGYHWTQEYKDSKPGKLFQ--GQPTKRTGTTIRFWPDPEIFETTT-F 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDK------------------EIAEKYGIP-----E 259
           +   + +  Q  A+L+  +    + ++                  + AE+         +
Sbjct: 58  NFETVARRLQEMAFLNKGLTITLTDERVSEGDVTDEVVSETAEAPKHAEEGAEAAPPKVK 117

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              +++PGGL+ +++     ++ I + I +   +  G     +E A+ W       + ++
Sbjct: 118 TRTYHYPGGLEDFVKHINRTKTPIHNSIVSFSGKGTGH---ELEVAMQWNSGYSESVHTF 174

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIRE 376
            NTI T EGGTHE G R ALT G+ KYA+  +  +    ++  DD+      I+SV I +
Sbjct: 175 ANTINTHEGGTHEEGFRAALTTGVNKYAKDKKLLKEKDGNLTGDDIREGLAAIVSVKIAD 234

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F GQTKTKL + D +  V+    +   H+   NP +A  ++   +  ++ R+  RK R
Sbjct: 235 PQFEGQTKTKLGNTDVKGFVQRTCNEHLTHWFEANPADAKTIVTKAVSSAQARVAARKAR 294

Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LPLRGK
Sbjct: 295 ELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGK 354

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           I+NV  A  +K+  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 IINVEKARIDKVLKNNEVQAIITAFGTGIHDEFDIAKLRYHKIVL 399


>gi|220680552|dbj|BAH10765.1| DNA gyrase subunit B [Nocardia pigrifrangens]
          Length = 399

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 116/405 (28%), Positives = 193/405 (47%), Gaps = 33/405 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L   V      ++Q +   +P      + +     GT I F  DP +F     +
Sbjct: 1   NALSSRLEAEVDHDGYHWTQTYKDAVPGQL--IQGEPTKATGTTIRFWADPAVFETTT-Y 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDK-----------------------EIAEKYGIPE 259
           +   + +  Q  A+L+  +    + ++                       E        +
Sbjct: 58  NFETVSRRLQEMAFLNKGLTIVLTDERVSDTEITDEVVSETAEAPKHSEGEATPTEHKVK 117

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              +++PGGL+ +++     +  I + + +   +  G     +E A+ W       + ++
Sbjct: 118 TRTYHYPGGLEDFVRHINRTKQPIHNSVVSFSGKGTGH---ELEVAMQWNSGYSESVHTF 174

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIRE 376
            NTI T EGGTHE G R ALT  + +YA+  +  +    ++  DD+      I+SV + E
Sbjct: 175 ANTINTHEGGTHEEGFRAALTTVVNRYAKDKKLLKDKDGNLTGDDIREGLAAIVSVKVSE 234

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F GQTKTKL + + +  V+    +   H+   NP +A  ++   +  ++ R+  RK R
Sbjct: 235 PQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVNKAVSSAQARVAARKAR 294

Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LPLRGK
Sbjct: 295 ELVRRKSATDIGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGK 354

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           I+NV  A  +K+  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 IINVEKARIDKVLKNAEVQSIITAFGTGIHDEFDISKLRYHKIVL 399


>gi|159576551|dbj|BAF92824.1| DNA gyrase subunit B [Virgibacillus koreensis]
          Length = 325

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 121/336 (36%), Positives = 178/336 (52%), Gaps = 15/336 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG SVVNALS EL V V R   +  Q FSRG+P   L+   +  +  GTR 
Sbjct: 1   YKVFGGLHGVGASVVNALSTELEVFVHRDGNVHYQAFSRGVPNEDLKIIGEA-DDTGTRT 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F PDP+IF +   ++   L    +  A+L+  +       +   E       E F++ G
Sbjct: 60  HFTPDPEIFKETRTYNYETLSNRLRELAFLNKGLSISIEDKRTDKE------PETFFYEG 113

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+++Y++     + ++    +  K E        VE A+ + +     I S+ N I T E
Sbjct: 114 GIRSYVEHINRTKEVLHEPFYAEKEEDN----INVEVALQYNDGFASNIYSFANNINTYE 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTHESG +  LTR I  YA      +    ++  DD+      I+S+   +P+F GQTK
Sbjct: 170 GGTHESGFKTGLTRVINDYARKNNLFKENDPNLTGDDVREGLTAIISIKHPDPQFEGQTK 229

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
           TKL + +A+   ++A  + F  +L +NP  A  +++  +  S  R+  +K RE   RK A
Sbjct: 230 TKLGNSEARTITDSAFSELFSKFLFENPDTARIVVDKGLMASRARIAAKKARELTRRKGA 289

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADCS   A  +EL+IVEGDSAGGSAK
Sbjct: 290 LEISSLPGKLADCSSRDATKSELYIVEGDSAGGSAK 325


>gi|167508096|gb|ABZ81323.1| GyrB [Bowmanella denitrificans]
          Length = 354

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 126/364 (34%), Positives = 198/364 (54%), Gaps = 15/364 (4%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS++L + + R   I  Q++  G+P +PL    +  +++GT I F P P  F D   F
Sbjct: 1   NALSEKLQLRIRRGGKIHEQEYHHGVPQAPLAPVGET-DEKGTSIRFWPSPATFSDV-EF 58

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  ++L+  V    + +++        + + F + GG+K ++Q   +N++ 
Sbjct: 59  HYDILAKRLRELSFLNSGVSIYLTDERD-------GKSDHFCYEGGIKAFVQYLNQNKTP 111

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +  + F   +E+      +VE A+ W +     I  + N I   +GGTH +G R ALTR 
Sbjct: 112 VHQKAFHFSSERDD--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRT 169

Query: 342 IKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +  Y E      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE  
Sbjct: 170 LNNYMEAEGLNKKSKTNASGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKPAVETT 229

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458
           + +    +L++NP +A  +   +I+ +  R   RK R    RK A+    LPGKLADC +
Sbjct: 230 MGEKLQEFLLENPGDAKIIAGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQE 289

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ 
Sbjct: 290 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 349

Query: 519 ALGC 522
           ALGC
Sbjct: 350 ALGC 353


>gi|71833768|emb|CAI94323.1| gyrase B [Helicobacter bizzozeronii]
          Length = 366

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 135/374 (36%), Positives = 205/374 (54%), Gaps = 18/374 (4%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS +L +T+ R   IF Q+F++GIP +PLE     + + GT I F PD
Sbjct: 1   GLHGVGVSVVNALSTKLIMTIKRGGQIFRQEFAKGIPTTPLEVVGTTKEQ-GTSIEFFPD 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P I      FD++ L K  Q  AYL+  V   +       +       E +++  GLK +
Sbjct: 60  PSIMEVV-AFDSSVLKKRFQEMAYLNHGVTIHFEDQPNQIK-------ETYHYTEGLKQF 111

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           +    +N  +     F+ + E        VE A+A+ E    ++ S+ N+I T EGGTHE
Sbjct: 112 ILDNNKNPLISEVIAFSAQAED-----MEVEIALAYNEGYSEQMFSFVNSIRTPEGGTHE 166

Query: 332 SGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           SG R+ L+R I  Y +   N  ++   ++ +D+    + ++S  I EP+F GQTK KL S
Sbjct: 167 SGFRMGLSRAILNYIQENANAREKEAGVVQEDIKEGLLAVISARILEPQFEGQTKAKLGS 226

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448
              +  V   + +    +  +NP  A  +++  +  ++ R   +K +E   +K  +    
Sbjct: 227 SFVRPVVAKLVYEKMAKFFEENPSVARAIMQKALLAAKGREAAKKAKELTRKKDNLSVGT 286

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADC        E+++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  +   KI 
Sbjct: 287 LPGKLADCQSKDPKECEIYLVEGDSAGGSAKQGRDRVFQAILPLRGKILNVEKSHLGKIL 346

Query: 509 NNQQIMDLVQALGC 522
            +++I +++ A GC
Sbjct: 347 KSEEIKNMITAFGC 360


>gi|215271408|emb|CAR48193.1| gyrase B subunit [Vibrio campbellii]
          Length = 350

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 123/360 (34%), Positives = 195/360 (54%), Gaps = 14/360 (3%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LS+++ +T+ R   I +Q +  G P +PL       ++ GT+I F P  + F +   F  
Sbjct: 1   LSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETFTNI-EFHY 58

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             L K  +  ++L+  V      ++E        + + F F GG++ +++    N++ I 
Sbjct: 59  DILAKRLRELSFLNSGVSIKLVDEREAD------KSDHFMFEGGIQAFVEHLNTNKTPII 112

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
            +IF    E++      VE A+ W +     I  + N I   +GGTH +G R ALTR + 
Sbjct: 113 EKIFHFDFERED--GIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLN 170

Query: 344 KYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE+A+ 
Sbjct: 171 TFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMG 230

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNI 460
           +    +L++NP EA  +   +I+ +  R   RK RE+  RK A+    LPGKLADC +  
Sbjct: 231 EKLSEFLIENPTEAKMVCSKIIDAAGAREAARKAREMTRRKGALDLAGLPGKLADCQEKD 290

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ AL
Sbjct: 291 PALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 350


>gi|148762365|dbj|BAF63884.1| DNA gyrase subunit B [Halobacillus kuroshimensis]
          Length = 325

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 120/336 (35%), Positives = 178/336 (52%), Gaps = 15/336 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG SVVNALS +L V V R   I  Q + RG+P   L+   +  ++ GTRI
Sbjct: 1   YKVSGGLHGVGASVVNALSTKLEVFVHRDGQIHYQSYKRGVPEEDLKVVGET-DQTGTRI 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F PD +IF +   +    L    +  A+L+  +       +   +        ++Y+ G
Sbjct: 60  HFIPDDEIFQETQEYKFEILANRLRELAFLNKGLTITIEDKRTDED------PVDYYYEG 113

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+ +Y++     R  I  + F  + E+      ++E A+ + +     I SY N I T E
Sbjct: 114 GILSYVEHMNRTREAIH-DAFFIEGEQD---EISIEIAMQYNDGFASNIYSYANNIHTYE 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTHESG +  LTR I  YA      +    ++  DD+      I+S+   +P+F GQTK
Sbjct: 170 GGTHESGFKTGLTRVINDYARKNSMFKETDPNLTGDDVREGLTAIISIKHPDPQFEGQTK 229

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
           TKL + +A+   +    + F  +L +NP  A  ++E  +  S  R+  +K RE   RK A
Sbjct: 230 TKLGNSEARTVTDARFSESFSKFLFENPTMAKTIVEKGLMASRARMAAKKARELTRRKNA 289

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADCS   A+ +EL+IVEGDSAGGSAK
Sbjct: 290 LEVSNLPGKLADCSSKDANISELYIVEGDSAGGSAK 325


>gi|148762393|dbj|BAF63898.1| DNA gyrase subunit B [Halobacillus sp. IA-Hb1]
          Length = 325

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 120/336 (35%), Positives = 178/336 (52%), Gaps = 15/336 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG SVVNALS +L V V R   I  Q + RG+P   L+   +  ++ GTRI
Sbjct: 1   YKVSGGLHGVGASVVNALSTKLEVFVHRDGQIHYQSYKRGVPEEDLKVVGET-DQTGTRI 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F PD +IF +   +    L    +  A+L+  +       +   +        ++Y+ G
Sbjct: 60  HFIPDDEIFQETQEYKFEILANRLRELAFLNKGLTITIEDKRTDED------PVDYYYEG 113

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+ +Y++     R  I  + F  + E+      ++E A+ + +     I SY N I T E
Sbjct: 114 GILSYVEHMNRTREAIH-DAFFIEGEQDEI---SIEIAMQYNDGFASNIYSYANNIHTYE 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTHESG +  LTR I  YA      +    ++  DD+      I+S+   +P+F GQTK
Sbjct: 170 GGTHESGFKTGLTRVINDYARKNSMFKETDPNLTGDDVREGLTAIISIKHPDPQFEGQTK 229

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
           TKL + +A+   +    + F  +L +NP  A  ++E  +  S  R+  +K RE   RK A
Sbjct: 230 TKLGNSEARTVTDALFSESFSKFLFENPTMAKTIVEKGLMASRARMAAKKARELTRRKNA 289

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADCS   A+ +EL+IVEGDSAGGSAK
Sbjct: 290 LEVSNLPGKLADCSSKDANISELYIVEGDSAGGSAK 325


>gi|310832494|gb|ADP30899.1| DNA gyrase B subunit [Acinetobacter soli]
          Length = 379

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 138/391 (35%), Positives = 205/391 (52%), Gaps = 17/391 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS +L +T+ R   I  Q++  G P  PL+   +        + F
Sbjct: 1   VSGGLHGVGVSVVNALSSKLQLTIHRAGQIHEQEYQHGDPKYPLKVVGETTTTGT-TVRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F     F    L +  +  ++L+  VK     ++   E         + + GGL
Sbjct: 60  WPSAETFSQTI-FSVDILARRLRELSFLNAGVKIVLRDERVNFE-------HIYAYEGGL 111

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
             +++   E ++ ++           G     VE A+ W +     +  + N I   +GG
Sbjct: 112 SEFVKYINEGKTHLNDIFHFTADADNGI---GVEVALQWNDSYQENVRCFTNNIPQKDGG 168

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTRG+  Y E      K  +S+  DD       I+SV + +P+F+ QTK K
Sbjct: 169 THLAGFRAALTRGLNSYLESENILKKEKVSVTGDDAREGLTAIISVKVPDPKFSSQTKEK 228

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIR 445
           LVS + +  VE A+   F  YL++NP  A  +   +I+ +  R   RK      RK+A+ 
Sbjct: 229 LVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALD 288

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +
Sbjct: 289 IAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFD 348

Query: 506 KIRNNQQIMDLVQALGCRT-RSQYREEDLRY 535
           K+ ++Q++  L+ ALGC   R +Y  + LRY
Sbjct: 349 KMISSQEVGTLITALGCGIGREEYNPDKLRY 379


>gi|301028491|ref|ZP_07191732.1| DNA gyrase, B subunit, carboxyl terminus [Escherichia coli MS
           196-1]
 gi|299878462|gb|EFI86673.1| DNA gyrase, B subunit, carboxyl terminus [Escherichia coli MS
           196-1]
          Length = 415

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 83/174 (47%), Positives = 119/174 (68%), Gaps = 1/174 (0%)

Query: 436 REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           +   RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GK
Sbjct: 1   KTPRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGK 60

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           ILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +L
Sbjct: 61  ILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTL 120

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           LLTFFY++M +++E+ H+++  PPL+++ +G +  Y  D+E   +        G
Sbjct: 121 LLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 174



 Score =  138 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 330 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 385

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 386 QLFTTLMGDAVEPRRAFIEENALKAANID 414


>gi|207107908|dbj|BAG71966.1| DNA gyrase subunit B [Gordonia namibiensis]
          Length = 411

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 123/416 (29%), Positives = 200/416 (48%), Gaps = 38/416 (9%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           GISVVNALS ++ + +      + Q ++   P    +       K GT + F PDP+IF 
Sbjct: 1   GISVVNALSTKVELEIENDGFHWEQTYTYAKPGPLEK--GDATRKTGTTVRFWPDPEIFT 58

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG--------------------- 256
           +   F+A  + +  Q  A+L+  +    +  +  A +                       
Sbjct: 59  ETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEAPGDANGDDEASVTEVAEAVQTE 118

Query: 257 --------IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
                    P+   +++P GL  Y++     +  I + +     + +G     VE A+ W
Sbjct: 119 TEKAAAATKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGFSAKGEGH---EVEIAMQW 175

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
                  + ++ NTI T EGGTHE G R ALT  + KYA   +   ++   +  DD+   
Sbjct: 176 NAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLIKEKDGKLTGDDIREG 235

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              ++S  + +P+F GQTKTKL + + +  V+    +   H+   NP EA  +++   + 
Sbjct: 236 LAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEANPAEAKIIVKKAADS 295

Query: 426 SEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           ++ R+  R+    V RKTA     LPGKLADC  N     E++IVEGDSAGGSAK  R+ 
Sbjct: 296 AQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSAGGSAKSGRDS 355

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             QA+LPLRGKI+NV  A  +++  N ++  ++ A G   R ++    LRY K+++
Sbjct: 356 MYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIRDEFDIAKLRYHKIVL 411


>gi|148762475|dbj|BAF63939.1| DNA gyrase subunit B [Bacillus licheniformis]
          Length = 327

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 121/336 (36%), Positives = 179/336 (53%), Gaps = 13/336 (3%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG SVVNALS EL VTV R   I  Q+F RG+P + L+         GT  
Sbjct: 1   YKVCGGLHGVGASVVNALSTELDVTVYRDGKIHYQEFERGVPKADLKVIGDT-EVTGTTT 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PDP+IF +   +D   L    +  A+L+  VK      +E  E+        + + G
Sbjct: 60  HFKPDPEIFTETTEYDYDTLATRVRELAFLTKGVKITIEDKREGKERKNE-----YCYEG 114

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K+Y++    +R +I  E    +  K G    TVE A+ + +     I S+ N I T E
Sbjct: 115 GIKSYVEHLNRSREVIHEEPVYIEGSKDGI---TVEVALQYNDSYTSNIYSFANNIHTYE 171

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTHE+G +  LTR I  YA       +   ++  +D+      I+S+   +P+F GQTK
Sbjct: 172 GGTHEAGFKTGLTRVINDYARRNGVFKESDPNLSGEDVREGLTAIISIKHPDPQFEGQTK 231

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTA 443
           TKL + +A+   +    +  + +L++NP  A K++E  V+        ++ +    RK+A
Sbjct: 232 TKLGNSEARTITDALFSEALEKFLLENPDSAKKIVEKGVMAARARMAAKKARELTRRKSA 291

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADCS      +EL+IVEGDSAGGSAK
Sbjct: 292 LEVSNLPGKLADCSSKDPTISELYIVEGDSAGGSAK 327


>gi|324962688|gb|ADY62446.1| gyrase subunit B [Frankia sp. NRRLB-16467]
          Length = 360

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 106/330 (32%), Positives = 161/330 (48%), Gaps = 21/330 (6%)

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           SL  +G + VVDNGRGIPV  HP    +  +E++LTTLHAGGKFD  +Y +SGGLHGVG+
Sbjct: 1   SLLADGAVRVVDNGRGIPVGMHP-TEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHGVGV 59

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L V +     ++ Q +    P +PL  K     K GT +TF  DP IF   
Sbjct: 60  SVVNALSTKLDVEIQVDGHVWFQPYVATRPAAPL-VKTGTTKKTGTSVTFWADPTIFET- 117

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             +    L +  Q  A+L+  +      ++          +  + +  GL  ++      
Sbjct: 118 TEYKFETLSRRLQEMAFLNKGLSITLIDER-----PEERLEVTYKYSNGLVDFVAHLNAT 172

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  I   + + +++  G      E A+ W       + ++ NTI T EGGTHE G R AL
Sbjct: 173 KDAIHRSVISLESKGVGI---EAELAMQWNAGYSESVYTFANTINTHEGGTHEEGFRAAL 229

Query: 339 TRGIKKYAELTQNKRAISI---------ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           T  +  YA+     + +             DD+      I+SV + +P+F GQTKTKL +
Sbjct: 230 TSAVNAYAKDQNLLKPVKAGAKSGDERLSGDDIREGLTAIISVKLAQPQFEGQTKTKLRN 289

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLL 419
            +A++ V+         +   N  EA  ++
Sbjct: 290 TEAKKFVQEMCYSALKDWFEVNRTEARAIV 319


>gi|93277218|gb|ABF06427.1| gyrase B [Streptomyces sp. M46]
          Length = 394

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 129/396 (32%), Positives = 200/396 (50%), Gaps = 19/396 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           ISVVNALS+ + V +      ++Q + RG+P +PL +  +   + GT +TF  DP IF  
Sbjct: 1   ISVVNALSNRVAVEILTDGHHWTQSYERGVPTAPLAR-GEATEETGTSVTFWADPSIFET 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE-------------KYGIPEKEEFYF 265
              +    L +  Q  A+L+  +    + ++  A+             +   P    +++
Sbjct: 60  T-DYSFETLSRRFQEMAFLNKGLTIKLTDERASAKATAGADSDEATAGEPEEPRTVTYHY 118

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILT 324
            GG+  ++      +  +          +      ++E A+ W     E + S+ NTI T
Sbjct: 119 EGGIVDFVTYLNSRKGEVIHPTVIDIEAEDKDRLLSIEVAMQWNGGYSEGVYSFANTIHT 178

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            EGGTHE G R ALT  + KYA   +    +  ++  DD+      I+SV + EP+F GQ
Sbjct: 179 HEGGTHEEGFRGALTTLVNKYARDRKLLRDKDDNLTGDDIREGLTAIISVKLGEPQFEGQ 238

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TKTKL + +A+  V+  + +    +  +NP EA  ++   I  +  R+  RK R++ R+ 
Sbjct: 239 TKTKLGNTEAKTFVQKVVYEHLADWFDRNPNEAADIIRKGIAAATARVAARKARDLTRRK 298

Query: 443 AI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            +     LPGKL+DC  N     E+FIVEGDSAGGSAK  R+   QA+LP+RGKILNV  
Sbjct: 299 GLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRDPMYQAILPIRGKILNVEK 358

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           A  +KI +NQ+I  L+ A G      +  E LRY K
Sbjct: 359 ARIDKILHNQEIQALISAFGTGVHEDFDIEKLRYHK 394


>gi|71833772|emb|CAI94325.1| gyrase B [Helicobacter bizzozeronii]
          Length = 366

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 134/374 (35%), Positives = 205/374 (54%), Gaps = 18/374 (4%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS +L +T+ R   IF Q+F++GIP +PLE     + + GT I F PD
Sbjct: 1   GLHGVGVSVVNALSTKLIMTIKRGGQIFRQEFAKGIPTTPLEVVGTTKEQ-GTSIEFFPD 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P I      FD++ L K  Q  AYL+  +   +       +       E +++  GLK +
Sbjct: 60  PSIMEVV-AFDSSVLQKRFQEMAYLNHGLTIHFEDQPHQIK-------ETYHYAAGLKQF 111

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           +    +N  +     F+ + E        VE A+A+ E    ++ S+ N+I T EGGTHE
Sbjct: 112 ILDNNKNPLISEVIAFSAQAED-----MEVEIALAYNEGYSEQMFSFVNSIRTPEGGTHE 166

Query: 332 SGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           SG R+ L+R I  Y +   N  ++   ++ +D+    + ++S  I EP+F GQTK KL S
Sbjct: 167 SGFRMGLSRAILNYIQENANAREKEAGVVQEDIKEGLLAVVSARILEPQFEGQTKAKLGS 226

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448
              +  V   + +    +  +NP  A  +++  +  ++ R   +K +E   +K  +    
Sbjct: 227 SFVRPVVAKLVYEKMAKFFEENPSVARAIMQKALLAAKGREAAKKAKELTRKKDNLSVGT 286

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADC        E+++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  +   KI 
Sbjct: 287 LPGKLADCQSKDPKECEIYLVEGDSAGGSAKQGRDRVFQAILPLRGKILNVEKSHLGKIL 346

Query: 509 NNQQIMDLVQALGC 522
            +++I +++ A GC
Sbjct: 347 KSEEIKNMITAFGC 360


>gi|319958738|gb|ADV90539.1| DNA gyrase subunit B [Bacillus pumilus]
          Length = 366

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 129/375 (34%), Positives = 195/375 (52%), Gaps = 13/375 (3%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LS  L VTV R   I  Q+F RG+P   LE   +          F PDP+IF +   FD 
Sbjct: 1   LSTTLDVTVYRDGKIHYQQFKRGVPAGDLEIIGETEVTGT-TTHFVPDPEIFTETIEFDY 59

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             L    +  A+L+  V       +E  E+        + + GG+K+Y++    ++ ++ 
Sbjct: 60  DTLANRVRELAFLTKGVNIIIEDLREGKERRNE-----YCYEGGIKSYVEHLNRSKEVVH 114

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
            E    + EK G    T+E A+ + +     I S+ N I T EGGTHE+G +  LTR I 
Sbjct: 115 EEPVYIEGEKDGI---TIEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGLTRVIN 171

Query: 344 KYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            YA      +    ++  +D+      I+S+   +P+F GQTKTKL + +A+   ++   
Sbjct: 172 DYARKNGVFKDGDSNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDSLFS 231

Query: 402 DPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460
           +  + +L++NP  A K++E  V+        ++ +    RK+A+    LPGKLADCS   
Sbjct: 232 EALEKFLLENPDAAKKIVEKGVMAARARMAAKKARELTRRKSALEVSSLPGKLADCSSKD 291

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  ++ AL
Sbjct: 292 PSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITAL 351

Query: 521 GCRTRSQYREEDLRY 535
           G      +  E  RY
Sbjct: 352 GTGIGEDFTLEKARY 366


>gi|220680548|dbj|BAH10763.1| DNA gyrase subunit B [Nocardia otitidiscaviarum]
          Length = 399

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 120/405 (29%), Positives = 202/405 (49%), Gaps = 33/405 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  +HV + R    +SQ++    P   ++       + GT  TF  DP IF     +
Sbjct: 1   NALSTRMHVEIDRDGYHWSQEYKDSKPGKLIK--GDPTKRTGTTQTFWADPNIFETTV-Y 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDK------------------EIAEKYGIP-----E 259
           +   + +  Q  A+L+  +    + ++                  +  ++   P     +
Sbjct: 58  NFETVARRLQEMAFLNKGLTITLTDERVSEGEITDEVVSETAEAPKHLDENTPPAEPKVK 117

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              +++PGGL+ Y++     ++ I + I +   +  G     +E A+ W       + ++
Sbjct: 118 TRTYHYPGGLEDYVKHINRTKTPIHNSIVSFTGKGTGH---ELEVAMQWNSGYSESVHTF 174

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIRE 376
            NTI T EGGTHE G R ALT  + KYA+  +  +    ++  DD+      I+SV + +
Sbjct: 175 ANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDDIREGLAAIVSVKVAD 234

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F GQTKTKL + + +  V+    +   H+   NP +A  +++  +  ++ R+  RK R
Sbjct: 235 PQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIVQKAVSSAQARVAARKAR 294

Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LPLRGK
Sbjct: 295 ELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGK 354

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           I+NV  +  +K+  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 IINVEKSRIDKVLKNNEVQSIITAFGTGIHDEFDISKLRYHKIVL 399


>gi|220680510|dbj|BAH10744.1| DNA gyrase subunit B [Nocardia cerradoensis]
          Length = 399

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 117/405 (28%), Positives = 200/405 (49%), Gaps = 33/405 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  +   + R    +SQ++    P   ++   +  ++ GT   F  DP +F     +
Sbjct: 1   NALSSRMVTEIDRDGFHWSQEYKDAKPGKLVK--GEPTDRTGTTQRFWADPDVFETTT-Y 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDK------------------EIAEKYGIP-----E 259
           +   + +  Q  A+L+  +    + ++                  +  E    P     +
Sbjct: 58  NFETISRRLQEMAFLNKGLTITLTDERVSEAEVTDEVVSETAEAPKHDEGTATPPEPKVK 117

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              +++PGGL+ +++     +  I + + +  ++  G     +E A+ W       + ++
Sbjct: 118 TRTYHYPGGLEDFVKHINRTKQAIHNTVVSFTSKGTGH---ELEVAMQWNSGYSESVHTF 174

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIRE 376
            NTI T EGGTHE G R ALT  + KYA+  +  +    ++  DD+      I+SV + E
Sbjct: 175 ANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDDIREGLAAIVSVKVSE 234

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F GQTKTKL + + +  V+    +   H+   NP +A  +++  +  ++ R+  RK R
Sbjct: 235 PQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQKAVSSAQARVAARKAR 294

Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LPLRGK
Sbjct: 295 ELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGK 354

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           I+NV  A  +K+  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 IINVEKARIDKVLKNNEVQSIITAFGTGIHDEFDISKLRYHKIVL 399


>gi|327200403|gb|AEA36081.1| DNA gyrase subunit B [Rhizobium hainanense]
          Length = 354

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 135/363 (37%), Positives = 200/363 (55%), Gaps = 13/363 (3%)

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS  L + + RQ  I    F+ G+  +PL++     N  GT ++F P  
Sbjct: 1   LHGVGVSVVNALSVWLKLKIRRQGRIHEMSFTHGVADAPLKETGDAGNATGTEVSFMPSS 60

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           + F     FD   L    +  A+L+  V+   +  +    K     +EE  + GGL+ ++
Sbjct: 61  ETFT-MIEFDYGTLEHRLRELAFLNSGVRILLTDKRHSDVK-----QEELLYDGGLEAFV 114

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHES 332
                 +  +  +  + ++EK G    TVE A+ W +   E    + N I   +GGTH +
Sbjct: 115 SYLDRAKKPLVQKPVSIRSEKDGI---TVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMA 171

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR I  YA+ +    K  +++  DD       +LSV + +P+F+ QTK KLVS 
Sbjct: 172 GFRAALTRQITSYADSSGITKKEKVTLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSS 231

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
             +  VE+ + +    +L ++P EA  L+  V+E +  R   RK RE   RK A+    L
Sbjct: 232 KVRPVVESLVNEALSTWLEEHPSEAKVLVGKVVEAAAAREAARKARELTRRKGALDIASL 291

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADCS+     +E+F+VEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  +K+ +
Sbjct: 292 PGKLADCSERDPAKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 351

Query: 510 NQQ 512
           +Q+
Sbjct: 352 SQE 354


>gi|220680562|dbj|BAH10770.1| DNA gyrase subunit B [Nocardia seriolae]
          Length = 399

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 123/405 (30%), Positives = 198/405 (48%), Gaps = 33/405 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L   V      ++Q++    P      +     + GT I F PDP+IF     F
Sbjct: 1   NALSTRLQADVDTDGFHWTQEYKDSKPGKL--VQGGPTKRTGTTIKFWPDPEIFETTT-F 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSC---------DKEIAEKYGIPEK------------- 260
               + +  Q  A+L+  +    +          D+ ++E    P+              
Sbjct: 58  SFETVARRLQEMAFLNKGLTITLTDQRVAEGDVIDEVVSETAEAPKHLDENAAVAAPKIK 117

Query: 261 -EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              +++PGGL+ +++     ++ I + I     +  G     VE A+ W       + ++
Sbjct: 118 TRTYHYPGGLEDFVKHINRTKTPIHNSIVAFTGKGTGH---EVEVAMQWNSGYSESVHTF 174

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIRE 376
            NTI T EGGTHE G R ALT  + KYA+  +  +    ++  DD+      I+SV I +
Sbjct: 175 ANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKEGNLTGDDIREGLAAIVSVKIAD 234

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F GQTKTKL + + +  V+    +   H+   NP +A  +++  +  ++ R+  RK R
Sbjct: 235 PQFEGQTKTKLGNTEVKSFVQRTCNEHISHWFEANPADAKTIVQKAVSSAQARVAARKAR 294

Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LPLRGK
Sbjct: 295 ELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGK 354

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           I+NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 IINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDIAKLRYHKIVL 399


>gi|324962680|gb|ADY62442.1| gyrase subunit B [Frankia sp. NRRLB-16466]
 gi|324962682|gb|ADY62443.1| gyrase subunit B [Frankia sp. ACN1]
          Length = 360

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 106/330 (32%), Positives = 161/330 (48%), Gaps = 21/330 (6%)

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           SL  +G + VVDNGRGIPV  HP    +  +E++LTTLHAGGKFD  +Y +SGGLHGVG+
Sbjct: 1   SLLADGAVRVVDNGRGIPVGMHP-TEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHGVGV 59

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L V +     ++ Q +    P +PL  K     K GT +TF  DP IF   
Sbjct: 60  SVVNALSTKLDVEIQVDGHVWFQPYVATRPAAPL-VKTGTTKKTGTSVTFWADPTIFET- 117

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             +    L +  Q  A+L+  +      ++          +  + +  GL  ++      
Sbjct: 118 TEYKFETLSRRLQEMAFLNKGLSITLIDER-----PEERLEVTYKYSNGLVDFVAHLNAT 172

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  I   + + +++  G      E A+ W       + ++ NTI T EGGTHE G R AL
Sbjct: 173 KDAIHRSVISLESKGVGI---EAELAMQWNAGYSESVYTFANTINTHEGGTHEEGFRAAL 229

Query: 339 TRGIKKYAELTQNKRAISI---------ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           T  +  YA+     + +             DD+      I+SV + +P+F GQTKTKL +
Sbjct: 230 TSAVNAYAKDQNLLKPVKAGAKSGDERLSGDDIREGLTAIISVKLAQPQFEGQTKTKLGN 289

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLL 419
            +A++ V+         +   N  EA  ++
Sbjct: 290 TEAKKFVQEMCYSALKDWFEVNRTEARAIV 319


>gi|89143178|emb|CAJ57486.1| DNA gyrase subunit B [Microbacterium dextranolyticum]
          Length = 377

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 119/378 (31%), Positives = 186/378 (49%), Gaps = 15/378 (3%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LS  L V V RQ  ++ Q++  G        +++  ++ GT ITF PD  IF     FD 
Sbjct: 1   LSTRLDVEVRRQGHVWRQEYRDGGAPQAPLSQDEATDETGTTITFWPDSTIFETV-EFDY 59

Query: 225 ARLLKMTQSKAYLSGRVKTCWSC---------DKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
             L    Q  A+L+  ++   S          D E  +       ++F++  GL  Y++ 
Sbjct: 60  DTLRTRFQQTAFLNKGLRITLSDLRPASAYVIDTEDGQSVEKQPFDDFHYERGLVDYVEY 119

Query: 276 KLENRSLISSEIFTGKTEKKGTHR-GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
             + R          + E + T R  ++E A+ W       + ++ NTI T EGGTHE G
Sbjct: 120 LNKIRKAEVVNDEIIEVESEDTERHISLELAMQWTTSYTENVFTFANTINTHEGGTHEEG 179

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALT  I KYA       ++  ++  +D+      ++SV + EP+F GQTKTKL + +
Sbjct: 180 FRAALTTLINKYARANNLLKEKDDNLTGEDIREGLTAVISVKLSEPQFEGQTKTKLGNTE 239

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLP 450
           A+  V+  + D    +L +NP +A +++   I+ +  RL  RK RE  R+ +      +P
Sbjct: 240 AKAFVQKIVGDQLTDWLDRNPAQAKRVITKAIDAATARLAARKARETARRKSVFESFSMP 299

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
            KL DC+      +E+F+VEGDSAGGSA   R+   QA+L LRGKILNV  A  ++   N
Sbjct: 300 EKLKDCTSKDPSISEIFLVEGDSAGGSAVSGRDPERQAILSLRGKILNVEKARLDRALGN 359

Query: 511 QQIMDLVQALGCRTRSQY 528
            +I  ++ A G      +
Sbjct: 360 AEIQAMISAFGTGIGEDF 377


>gi|117555560|gb|ABK35307.1| DNA gyrase subunit B [Acinetobacter xiamenensis]
          Length = 369

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 125/380 (32%), Positives = 196/380 (51%), Gaps = 16/380 (4%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS +L +T+ R   I  Q++  G  + PL+         GT + F P  + 
Sbjct: 1   GVGVSVVNALSSKLELTIHRAGQIHQQEYCHGDSVYPLKVVGPT-ETTGTTVRFWPSSET 59

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     F+   L +  +  ++L+  V+     ++   E         + + GGL  +++ 
Sbjct: 60  FSQTI-FNVDILARRLRELSFLNAGVRIVLRDERVALE-------HIYDYEGGLSEFVKY 111

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             + ++ ++          +G     VE A+ W +     +  + N I   +GGTH +G 
Sbjct: 112 MNQGKTHLNDIFHFTADSDQGIM---VEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGF 168

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTRG+ +Y E      K  +++  DD       I+SV + +P+F+ QTK KLVS + 
Sbjct: 169 RAALTRGLNQYLESENILKKEKVNVSGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEV 228

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPG 451
           +  VE A+   F  YL++NP  A  +   +I+ +  R   RK      RK+A+    LPG
Sbjct: 229 KTAVEQAMNKAFSEYLLENPTAAKAIAGKIIDAARARDAARKAREMTRRKSALDIAGLPG 288

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++ 
Sbjct: 289 KLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMISSA 348

Query: 512 QIMDLVQALGCRTRSQYREE 531
           ++  L+ ALGC    +    
Sbjct: 349 EVGTLITALGCGIGREEYNP 368


>gi|220680183|dbj|BAH10710.1| DNA gyrase subunit B [Nocardia abscessus]
          Length = 399

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 119/405 (29%), Positives = 193/405 (47%), Gaps = 33/405 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L   + R    +SQ +    P      + +   K GT I F  DP+IF     +
Sbjct: 1   NALSSRLEAEIDRDGYHWSQTYKDSTPGKL--VQGEPTKKTGTTIRFWADPEIFETTT-Y 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-----------------------YGIPE 259
           +   + +  Q  A+L+  +    + ++                                +
Sbjct: 58  NFETVARRLQEMAFLNKGLTIKLTDERVSDSDVTDEVVSETAEAPKHADESAAPAEHKVK 117

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              +++PGGL+ +++     +  I + +     +  G     +E A+ W       + ++
Sbjct: 118 TRTYHYPGGLEDFVRHINRTKQAIHNSVVGFTGKGTGH---ELEVAMQWNSGYSESVHTF 174

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIRE 376
            NTI T EGGTHE G R ALT  + KYA+  +  +    ++  DD+      I+SV + E
Sbjct: 175 ANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDDIREGLAAIVSVKVGE 234

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F GQTKTKL + + +  V+    +   H+   NP +A  ++   +  ++ R+  RK R
Sbjct: 235 PQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIVNKAVSSAQARVAARKAR 294

Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LPLRGK
Sbjct: 295 ELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGK 354

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           I+NV  A  +K+  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 IINVEKARIDKVLKNNEVQSIITAFGTGIHDEFDIGKLRYHKIVL 399


>gi|237769859|dbj|BAH10712.2| DNA gyrase subunit B [Nocardia anaemiae]
          Length = 399

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 116/405 (28%), Positives = 194/405 (47%), Gaps = 33/405 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L   +      +SQ +    P      + +   + GT I F  DP+IF     +
Sbjct: 1   NALSHRLEAEIDHDGYHWSQTYKDAKPGKL--VQGEPTKRTGTTIRFWADPEIFETTT-Y 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-----------------------YGIPE 259
           +   + +  Q  A+L+  +    + ++    +                           +
Sbjct: 58  NFETVARRLQEMAFLNKGLTIVLTDERVSDAEVTDEVVSETAEAPKHADEEAPAPAHKVK 117

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              +++PGGL+ +++     +  I + + +   +  G     +E A+ W       + ++
Sbjct: 118 TRTYHYPGGLEDFVKHINRTKQPIHNSVVSFTGKGTGH---ELEVAMQWNSGYSESVHTF 174

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIRE 376
            NTI T EGGTHE G R ALT  + KYA+  +  +    ++  DD+      I+SV + E
Sbjct: 175 ANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKDKDGNLTGDDIREGLAAIVSVKVGE 234

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F GQTKTKL + + +  V+    +   H+   NP +A  ++   +  ++ R+  RK R
Sbjct: 235 PQFEGQTKTKLGNPEVKSFVQRTCNEHLSHWFEANPADAKTIVNKAVSSAQARVAARKAR 294

Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LPLRGK
Sbjct: 295 ELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGK 354

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           I+NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 IINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYHKIVL 399


>gi|302122536|gb|ADK92937.1| DNA gyrase subunit B [Geobacillus sp. 49]
          Length = 332

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 120/342 (35%), Positives = 185/342 (54%), Gaps = 14/342 (4%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS+ L V V R   I  Q++ RG P + L+   +  ++ GT   F+PDP+IF 
Sbjct: 1   GASVVNALSEWLEVYVYRDGKIHYQRYERGEPCTDLQVIGET-DRTGTTTRFKPDPEIFT 59

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   FD   L    +  A+L+  +K   + ++  + K        + + GG+++Y++   
Sbjct: 60  ETTEFDYETLATRLRELAFLNRGLKITLTDERIDSRKNE------YVYEGGIRSYVRHLN 113

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
             R ++  E      E+ G     VE A+ + +     I S+ N I T EGGTHESG ++
Sbjct: 114 RTREVLHEEPIYIAGERDGI---AVEIALQYNDGYTSNIYSFVNNIHTHEGGTHESGFKM 170

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA   Q   +   ++  +D+      I+S+    P+F GQTKTKL + DA+ 
Sbjct: 171 ALTRIINDYARKQQIFKENDTNLTGEDVREGLTAIVSIKHPSPQFEGQTKTKLGNSDART 230

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
             +    + F+ +L++NP  A K++E  ++        ++ +    RK+A+    LPGKL
Sbjct: 231 VTDAVFSEQFETFLLENPTIARKIVEKGMMAARARLAAKKARELTRRKSALEISNLPGKL 290

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           ADCS      +EL++VEGDSAGGS KQ R+R  QA+LPLRGK
Sbjct: 291 ADCSSRDPSISELYVVEGDSAGGSTKQGRDRHFQAILPLRGK 332


>gi|254055407|gb|ACT64303.1| GryB [Burkholderia cepacia]
          Length = 374

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 132/384 (34%), Positives = 198/384 (51%), Gaps = 26/384 (6%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK-----------EKVRNKRG 204
           GVG+S VNALS  L +TV R       +F RGI    + +                  RG
Sbjct: 1   GVGVSCVNALSSWLRLTVRRGGKKRFMEFHRGIAQDRVLEMVDGVEVSPMLVTGDTENRG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F  DP IFG    +    L K  +  ++L+  V+   +  +   E         F 
Sbjct: 61  TEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD-------FA 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           F GG+K +++   + ++ +   +F    EK G     VE A+ W +     +  + N I 
Sbjct: 113 FAGGVKGFVEYINKTKTNLHPTVFHAIGEKDGV---GVEVAMQWNDSYNENVLCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + EP+F+ 
Sbjct: 170 QRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK KLVS + +  VE  +    + +L++ P++A  +   ++E +  R   RK RE+ R+
Sbjct: 230 QTKDKLVSSEVRAPVEEVVAKALEEFLLETPLDAKIICGKIVEAARARDAARKAREMTRR 289

Query: 442 TA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
              +  + LPGKLADC +      E++IVEGDSAGGSAKQ R+R  QA+LPLRGK+LNV 
Sbjct: 290 KGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVE 349

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT 524
            A  +K+ +++QI+ LV ALGC  
Sbjct: 350 KARYDKLLSSEQIVTLVTALGCGI 373


>gi|188037359|gb|ACD46298.1| DNA gyrase subunit B [Providencia sneebia]
          Length = 270

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 91/282 (32%), Positives = 144/282 (51%), Gaps = 15/282 (5%)

Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179
            H +    S  E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALS++L + + R   +
Sbjct: 1   IHEE-EGVSAAEVIMTVLHAGGKFDGNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGNV 59

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
             Q +  G P  PL    +  ++ GTR+ F P  + F     F+   L K  +  ++L+ 
Sbjct: 60  HEQIYRHGEPQGPLTVVGET-DQTGTRVRFWPSLETFKGVTEFEYEILAKRLRELSFLNS 118

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            V       +   E       + F++ GG+K +++    N++ I   +F   TEK G   
Sbjct: 119 GVSIKLIDKRNGKE-------DHFHYEGGIKAFVEYLSRNKNPIHPSVFYFSTEKDGI-- 169

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
             VE A+ W +     +  Y N I   +GGTH +G R A+TR +  Y +      K  +S
Sbjct: 170 -GVEIAMQWNDGFQENVYCYTNNIPQRDGGTHLAGFRAAMTRTLNNYVDKEGYQKKSKVS 228

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
              DD     + + SV + +P+F+ QTK KLV  + +  +E 
Sbjct: 229 ATGDDAREGLIAVXSVKVPDPKFSSQTKEKLVFTEVKTALET 270


>gi|220680588|dbj|BAH10783.1| DNA gyrase subunit B [Nocardia xishanensis]
          Length = 400

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 118/406 (29%), Positives = 197/406 (48%), Gaps = 34/406 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L   V      ++Q++    P   ++   +   + GT I F PD +IF     F
Sbjct: 1   NALSSRLEAEVDHDGYHWTQEYKDSKPGKLMQ--GEATKRTGTTIRFWPDAEIFETTT-F 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKE------------------------IAEKYGIP 258
           +   + +  Q  A+L+  +    + ++                          A +    
Sbjct: 58  NFETVARRLQEMAFLNKGLTITLTDERVSGSEVTDEVVSDTAEAPKHLDENAPAAEEPKV 117

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +   +++PGGL+ +++     +  I + +     +  G     +E A+ W       + +
Sbjct: 118 KVRTYHYPGGLEDFVKHINRTKQPIHNSVVGFTGKGTGH---ELEVAMQWNSGYSESVHT 174

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIR 375
           + NTI T EGGTHE G R ALT  + KYA+  +  +    ++  DD+      I+SV I 
Sbjct: 175 FANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDDIREGLAAIVSVKIS 234

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           +P+F GQTKTKL + + +  V+    +   H+   NP +A  +++  +  ++ R+  RK 
Sbjct: 235 DPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQKAVSSAQARVAARKA 294

Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LPLRG
Sbjct: 295 RELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRG 354

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           KI+NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 KIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDISKLRYHKIVL 400


>gi|158254107|gb|AAI54369.1| Top2a protein [Danio rerio]
          Length = 349

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 63/323 (19%), Positives = 114/323 (35%), Gaps = 46/323 (14%)

Query: 50  RILEGLEPVRMRPGMYIGGTDE----------------------KALHHLFSEVIDNAMD 87
           +    LE + +RP  YIG  +                         L+ +F E++ NA D
Sbjct: 34  QKKTQLEHILLRPDTYIGSVEPVTQQMWVFDEDTGMNCRDITFVPGLYKIFDEILVNAAD 93

Query: 88  EVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
                   N I+V++D  N  ++V +NG+GIPV  H K        +I   L     +D+
Sbjct: 94  NKQRDKTMNCIKVTIDPENNTISVWNNGKGIPVVEH-KVEKVYVPALIFGQLLTSSNYDD 152

Query: 146 STYEISGGLHGVGISVVNALSDELHVT--VARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
              +++GG +G G  + N  S +  V          F Q +   +  +   K +      
Sbjct: 153 DEKKVTGGRNGYGAKLCNIFSLKFTVETACRESKRCFKQTWFDNMGRAGESKIKPFDGDD 212

Query: 204 GTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
            T ITF+PD              A L +     A  +  V+   +  +            
Sbjct: 213 YTCITFQPDLAKFKMQALDKDTVALLTRRAYDIAGSTKGVRVLLNGKRLPI--------- 263

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
                   +TY+   ++++   +    T   E         E  +   E+  +  S+ N+
Sbjct: 264 -----NNFRTYVDLYVKDKVDETGSPLTVVHEM---VNERWEVCLTLSEKGFQQVSFVNS 315

Query: 322 ILTDEGGTHESGLRVALTRGIKK 344
           I T +GG H   +   +   + +
Sbjct: 316 IATTKGGRHTDYVADQIVSKLIE 338


>gi|324962690|gb|ADY62447.1| gyrase subunit B [Frankia sp. NRRLB-16406]
          Length = 360

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 106/330 (32%), Positives = 161/330 (48%), Gaps = 21/330 (6%)

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           SL  +G + VVDNGRGIPV  HP    +  +E++LTTLHAGGKFD  +Y +SGGLHGVG+
Sbjct: 1   SLLADGAVRVVDNGRGIPVGMHP-TEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHGVGV 59

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L V +     ++ Q +    P +PL  K     K GT +TF  DP IF   
Sbjct: 60  SVVNALSTKLDVEIQVDGHVWFQPYVATRPAAPL-VKTGTTKKTGTSVTFWADPTIFET- 117

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             +    L +  Q  A+L+  +      ++          +  + +  GL  ++      
Sbjct: 118 TEYKFETLSRRLQEMAFLNKGLSITLIDER-----PEERLEVTYKYSNGLVDFVAHLNAT 172

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  I   + + +++  G      E A+ W       + ++ NTI T EGGTHE G R AL
Sbjct: 173 KDAIHRSVISLESKGVGI---EAELAMQWNAGYSESVYTFANTINTHEGGTHEEGFRAAL 229

Query: 339 TRGIKKYAELTQNKRAISI---------ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           T  +  YA+     + +             DD+      I+SV + +P+F GQTKTKL +
Sbjct: 230 TSAVNAYAKDQNLLKPVKAGAKSGDERLSGDDIREGLAAIISVKLAQPQFEGQTKTKLRN 289

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLL 419
            +A++ V+         +   N  EA  ++
Sbjct: 290 TEAKKFVQEMCYSALKDWFEVNRTEARAIV 319


>gi|324962640|gb|ADY62422.1| gyrase subunit B [Frankia sp. KB]
          Length = 360

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 93/335 (27%), Positives = 148/335 (44%), Gaps = 21/335 (6%)

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G + V DNGRGIPV   P    +  +E++LTTLHAGGKFD  +Y +SGGLHGVG+
Sbjct: 1   TLLADGGVRVTDNGRGIPVGM-PPTEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHGVGV 59

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS  L V +     ++ Q +    P  PL K    R                 + 
Sbjct: 60  SVVNALSTRLDVEIHLDGHVWFQPYVATRPDKPLAKTGTTRRTG--TSVTFWADPTMFET 117

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             +    L    Q  A+L+  +      +++            + +  GL  ++      
Sbjct: 118 TEYKYETLSCRLQEMAFLNKGLSITLVDERDEERVAVT-----YKYANGLVDFVGHLNAT 172

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  I   + + +++  G      E A+         + ++ NTI T EGGTHE G R AL
Sbjct: 173 KDTIHRSVISLESKGVGI---EAELAMQCNGGYTESVYTFANTINTHEGGTHEEGFRAAL 229

Query: 339 TRGIKKYAELTQNKRAISI---------ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           T  +  Y +     + +             DD+      I+SV + +P+F GQTKTKL +
Sbjct: 230 TSAVNVYGKEQNLLKPVKAGAKNSDERLSGDDIREGLTAIISVKLAQPQFEGQTKTKLGN 289

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            +A++ V+         +   N  EA  ++   ++
Sbjct: 290 TEAKKFVQEMCYSALKDWFEVNRTEARAIVSKALD 324


>gi|163256319|dbj|BAF95670.1| DNA gyrase subunit B [Bradyrhizobium sp. KO11]
          Length = 271

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 73/195 (37%), Positives = 111/195 (56%), Gaps = 7/195 (3%)

Query: 87  DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146
           DE +AG+A+ + V+L+ +  +TV D+GRGIPV  H K    S  E+I+T LHAGGKFD +
Sbjct: 1   DEALAGHASRVLVTLNADNSVTVYDDGRGIPVGIH-KEEGVSAAEVIMTQLHAGGKFDQN 59

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS +L + + R +     +F+ G  ++PL+       KRGT 
Sbjct: 60  SYKVSGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHGDAVAPLKVVGDAPGKRGTE 119

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           +TF    + F +   +D A L    +  A+L+  V    S  +   EK      EE ++ 
Sbjct: 120 VTFLASTETFKN-VEYDFATLEHRLRELAFLNSGVHIVLSDMRHAVEKR-----EEMHYS 173

Query: 267 GGLKTYLQTKLENRS 281
           GG++   Q     + 
Sbjct: 174 GGVRGIRQISRPQQE 188


>gi|220680536|dbj|BAH10757.1| DNA gyrase subunit B [Nocardia jiangxiensis]
          Length = 398

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 115/404 (28%), Positives = 196/404 (48%), Gaps = 32/404 (7%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  + + + R    +SQ +    P + ++   +   + G    F PDP+IF     F
Sbjct: 1   NALSTRVELEIDRDGFHWSQNYIEAKPDALVK--GEPTTRTGNTTRFWPDPEIFETTT-F 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDK----------------------EIAEKYGIPEK 260
           +     +  Q   +L+  +    + ++                      + A      + 
Sbjct: 58  NFETGARRLQEMGFLNKGLTITLTDERVTDSEVTDEVVSETADAPKHAGDSAPTEHKVKT 117

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
             +++PGGL+ +++     +  I + +     +  G     +E A+ W       + ++ 
Sbjct: 118 RTYHYPGGLEDFVRHINRTKQPIHNSVVGFTGKGTGH---ELEVAMQWNSGYSESVHTFA 174

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           NTI T EGGTHE G R ALT  + KYA+  +   ++  ++  DD+      I+SV + EP
Sbjct: 175 NTINTHEGGTHEEGFRAALTTVVNKYAKDKKLIKEKDGNLTGDDIREGLAAIVSVKVGEP 234

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F GQTKTKL + + +  V+    +   H+   NP +A  ++   +  ++ R+  RK RE
Sbjct: 235 QFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIVNKAVSSAQARVAARKARE 294

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
            V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LP+RGKI
Sbjct: 295 LVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPIRGKI 354

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 INVEKARIDRVLKNNEVQSIITAFGTGIHDEFDISKLRYHKIVL 398


>gi|327200353|gb|AEA36056.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|327200355|gb|AEA36057.1| DNA gyrase subunit B [Agrobacterium tumefaciens]
 gi|327200361|gb|AEA36060.1| DNA gyrase subunit B [Agrobacterium tumefaciens str. C58]
          Length = 358

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 126/367 (34%), Positives = 192/367 (52%), Gaps = 13/367 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  L + + R   +    F+ G+  +PL    +   + GT +TF
Sbjct: 1   VSGGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGRSGTEVTF 60

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
              P+ F     +D   L    +  A+L+  V+   +  +    K          + GGL
Sbjct: 61  LASPQTF-TMTDYDYGTLEHRLRELAFLNSGVRILLTDKRHSDVKQQE-----LLYDGGL 114

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328
           + +++     +  +  +     +EK G    TVE A+ W +   E    + N I   +GG
Sbjct: 115 EAFVRYLDRAKKPLVDKPIAIHSEKDGI---TVEVALWWNDSYHENVLCFTNNIPQRDGG 171

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  YA+ +   +   +    +D       ILSV + +P+F+ QTK K
Sbjct: 172 THMAGFRAALTRQVTSYADTSGIMKREKVSLQGEDCREGLTAILSVKVPDPKFSSQTKDK 231

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIR 445
           LVS + +  VE+ + +    +L ++P EA  L+ + V         R+ +    RK A+ 
Sbjct: 232 LVSSEVRPVVESLVNEALSTWLEEHPSEAKILIGKVVEAAVAREAARKARELTRRKGALD 291

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS+     +ELF+VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +
Sbjct: 292 IASLPGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFD 351

Query: 506 KIRNNQQ 512
           K+ ++Q+
Sbjct: 352 KMLSSQE 358


>gi|284813078|gb|ADB97208.1| DNA gyrase subunit B [Ignatzschineria indica]
          Length = 352

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 120/361 (33%), Positives = 196/361 (54%), Gaps = 16/361 (4%)

Query: 168 ELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARL 227
           +L +T+ +   +  Q+++ G P  PL +  +  +K GT + F+P  ++F +   FD   L
Sbjct: 4   KLKLTIYKHGKVHEQEYTLGDPDYPLREIGET-DKTGTTVYFKPSKEVFNNI-DFDYDTL 61

Query: 228 LKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEI 287
            K  +  A+L+  ++     +++  E       + F + GG+K Y++   +NR+ I  +I
Sbjct: 62  YKRLRELAFLNSGIRITLRDERDDRE-------DVFQYEGGIKAYVELINKNRNKIHPQI 114

Query: 288 FTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYA 346
           F    +K      +VE ++ W +     +  Y N I   +GGTH +G R A+TR + +Y 
Sbjct: 115 FYCNCQKDNI---SVEISLQWTDGYQESVFCYTNNIPQSDGGTHLAGFRAAMTRTLNRYM 171

Query: 347 ELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF 404
           +     +        DD       I+SV I  P+F+ QTK KLVS + +  V++ L +  
Sbjct: 172 QEEGLLKKTKVATTGDDAREGLTAIISVKIPGPKFSSQTKEKLVSSEVRPVVDSILAERL 231

Query: 405 DHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHG 463
           + +L++ P +A  +   +I+ +  R   RK RE   RK+A+    LPGKLADC +     
Sbjct: 232 EEFLLERPEDAKAITSKIIDAAMAREAARKARENTRRKSALDIAGLPGKLADCQEKDPAK 291

Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523
           +ELFIVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +++ ++ +I  L+ ALGC 
Sbjct: 292 SELFIVEGDSAGGSAKQGRSRKFQAILPLKGKILNVERARFDRMISSAEIGTLITALGCG 351

Query: 524 T 524
            
Sbjct: 352 I 352


>gi|207107918|dbj|BAG71971.1| DNA gyrase subunit B [Gordonia rubripertincta]
          Length = 411

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 123/416 (29%), Positives = 198/416 (47%), Gaps = 38/416 (9%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           GISVVNALS ++ + +      + Q +S   P    +       K GT + F PDP IF 
Sbjct: 1   GISVVNALSTKVELEIENDGFHWEQTYSYAKPGPLEK--GDATRKTGTTVRFWPDPDIFT 58

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG--------------------- 256
           +   F+A  + +  Q  A+L+  +    +  +  A +                       
Sbjct: 59  ETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEPPGDANGDEDAPATDVAEAVQTE 118

Query: 257 --------IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
                    P+   +++P GL  Y++     +  I + +     + +G     VE A+ W
Sbjct: 119 TEKAAAATKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGFSAKGEGH---EVEIAMQW 175

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
                  + ++ NTI T EGGTHE G R ALT  + KYA   +   ++   +  DD+   
Sbjct: 176 NAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLIKEKDGKLTGDDIREG 235

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              ++S  + +P+F GQTKTKL + + +  V+    +   H+   NP EA  +++   + 
Sbjct: 236 LAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEANPAEAKIIVKKAADS 295

Query: 426 SEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           ++ R+  R+    V RKTA     LPGKLADC  N     E++IVEGDSAGGSAK  R+ 
Sbjct: 296 AQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSAGGSAKSGRDS 355

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
             QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 356 MYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDIAKLRYHKIVL 411


>gi|171702764|dbj|BAG16350.1| DNA gyrase subunit B [Flavobacterium sp. GMY-17]
          Length = 356

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 131/360 (36%), Positives = 193/360 (53%), Gaps = 9/360 (2%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            I+ Q++ RG  L P+++  +    RGTR TF PD  IF     F    L    +  ++L
Sbjct: 2   KIYEQEYERGKSLYPVKQIGETEK-RGTRQTFYPDNTIFTQTTEFSYDTLSARMRELSFL 60

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +   ++  +E+ EK      E F+   GLK Y++    NR  I S + +   +K   
Sbjct: 61  NKGITITFTDKREVDEKG-EFRSEVFHSTEGLKEYIRYLDGNREPIVSHVISMDHDK--- 116

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRA 354
               VE A+ +       I SY N I T EGGTH  G R  LTR +KKYA+ +    K  
Sbjct: 117 GEIPVEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRSGLTRTLKKYADASGMLDKLK 176

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             I  DD       I+SV + EP+F GQTKTKL + +    V  A+ +  ++YL +NP +
Sbjct: 177 FEIAGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVVSPVSQAVGEMLENYLEENPND 236

Query: 415 ATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  +++ VI  ++ R   +K RE+  RKT +    LPGKL+DCS+      E+++VEGDS
Sbjct: 237 ARVIIQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPARCEVYLVEGDS 296

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGG+AKQ R+R+ QA+LPLRGKILNV  A   K+  N++I ++  ALG    +    + L
Sbjct: 297 AGGTAKQGRDRNFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTVGTAEDSKAL 356


>gi|118201790|gb|ABK79708.1| DNA gyrase subunit b [Phaeobacter gallaeciensis]
          Length = 357

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 119/366 (32%), Positives = 186/366 (50%), Gaps = 13/366 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALSD L + + R       +F RG     L+   +  ++ GT + F      F +   +
Sbjct: 1   NALSDWLELRIWRDGKEHVARFERGDTAEHLKVVGECGDQTGTEVRFLASTDTFSNL-EY 59

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  A+L+  V+     ++          + E ++ GG+K +++    ++S 
Sbjct: 60  SFETLEKRLRELAFLNSGVRIILIDER-----PAERLEVELFYEGGVKEFVKYLDRSKSP 114

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +         +K       VE A+ W +     +  + N I   +GGTH +G R ALTR 
Sbjct: 115 VMEVPIYITGDKDDI---GVEVAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRT 171

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  YA+ +    K  +S   DD       +LSV + +P+F+ QTK KLVS + +  VE+ 
Sbjct: 172 INNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESL 231

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    +  +NP +A +++  +IE +  R   RK RE   RKTA+    L GKL DCS+
Sbjct: 232 VNEKLAEWFEENPNQAKQIVGKIIEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSE 291

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TE+F+VEGDSAGGSA+  R+R  QA+LPLRGKILNV  A  +++  +Q+I +LV 
Sbjct: 292 KDPSKTEVFLVEGDSAGGSAQTGRDRMTQAILPLRGKILNVERARFDRMLGSQEIGNLVM 351

Query: 519 ALGCRT 524
           ALG   
Sbjct: 352 ALGTGI 357


>gi|170178294|gb|ACB10194.1| DNA gyrase subunit B [Kribbella swartbergensis]
          Length = 368

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 126/370 (34%), Positives = 194/370 (52%), Gaps = 7/370 (1%)

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT ITF  +P IF     +    L    +  A+L+  ++     ++    + G P ++ 
Sbjct: 1   HGTTITFWANPDIFETTT-YSYETLSTRFREMAFLNKGLEIVIRDERPDHTEDGNPVEQS 59

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           F +  GL  Y++     R  +  ++ + +  + G +  ++E A+ W       + ++ N 
Sbjct: 60  FKYDNGLVDYVKYLTGIRETVHRDVISFEAAQ-GDNDMSLEVALQWSSSFQESVHTFANA 118

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I T EGGTHE G R ALT  +  + E      K+   +  DD+      I+SV + EP+F
Sbjct: 119 INTHEGGTHEEGFRAALTSLVNSFGEDQGMIKKKEDRLTGDDIREGLTAIISVKLAEPQF 178

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-- 437
            GQTKTKL + + +  V+  + D    +  QNP E  +++      +  R+  RK R+  
Sbjct: 179 EGQTKTKLGNTEVKGFVQRVVNDKLGAWFEQNPAEGREIIRKATAAASARIAARKARDLA 238

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
            NRK  +    LPGKLADC        E++IVEGDSAGGSAK  R+   QA+LP+RGKIL
Sbjct: 239 RNRKGLLGGGGLPGKLADCQSTNPEECEVYIVEGDSAGGSAKGGRDPKFQAILPIRGKIL 298

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557
           NV  A  +K+  N ++  ++ ALG      + E+ LRY K+++M DADVDG HI +LLLT
Sbjct: 299 NVEKARIDKVLQNNEVQAIISALGTGIHEDFDEDKLRYHKIVLMADADVDGQHIRTLLLT 358

Query: 558 FFYQEMYDLI 567
             ++ M  LI
Sbjct: 359 LLFRFMRPLI 368


>gi|71833770|emb|CAI94324.1| gyrase B [Helicobacter bizzozeronii]
          Length = 366

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 136/374 (36%), Positives = 205/374 (54%), Gaps = 18/374 (4%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS +L +T+ R   IF Q+F++GIP +PLE     + + GT I F PD
Sbjct: 1   GLHGVGVSVVNALSTKLVMTIKRGGQIFRQEFAKGIPTTPLEVVGTTKEQ-GTSIEFFPD 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P I      FD++ L K  Q  AYL+  V   +       +       E +Y+  GLK +
Sbjct: 60  PSIMEVV-AFDSSVLQKRFQEMAYLNHGVTIHFEDQPNQIK-------ETYYYTEGLKQF 111

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           +    +N  +     F+ + E        VE A+A+ E    ++ S+ N+I T EGGTHE
Sbjct: 112 ILDTNKNPLISEVIAFSAQAED-----MEVEIALAYNEGYSEQMFSFVNSIRTPEGGTHE 166

Query: 332 SGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           SG R+ L+R I  Y +   N  ++   ++ +D+    + ++S  I EP+F GQTK KL S
Sbjct: 167 SGFRMGLSRAILNYIQENANAREKEAGVVQEDIKEGLLAVISARILEPQFEGQTKAKLGS 226

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448
              +  V   + +    +  +NP  A  +++  +  ++ R   +K +E   +K  +    
Sbjct: 227 SFVRPVVAKLVYEKMAKFFEENPSVARAIMQKALLAAKGREAAKKAKELTRKKDNLSVGT 286

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADC        E+++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  +   KI 
Sbjct: 287 LPGKLADCQSKDPKECEIYLVEGDSAGGSAKQGRDRVFQAILPLRGKILNVEKSHLGKIL 346

Query: 509 NNQQIMDLVQALGC 522
            +++I +++ A GC
Sbjct: 347 KSEEIKNMITAFGC 360


>gi|224458595|gb|ACN43176.1| GryB [Aeromonas veronii]
          Length = 358

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 133/368 (36%), Positives = 202/368 (54%), Gaps = 16/368 (4%)

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALSD+L +T+ R   ++ Q +  G PL+PL++        GT + F P P IF D  
Sbjct: 1   VVNALSDKLLLTIRRNGHVYEQTYHLGEPLAPLKQIGDSTG-TGTEVRFWPSPAIFSDTL 59

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L K  +  ++L+  V      +++  E         F + GG+K +++   +N+
Sbjct: 60  -FHYEILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNK 111

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALT
Sbjct: 112 TPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALT 168

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE
Sbjct: 169 RTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVE 228

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
            A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC
Sbjct: 229 QAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADC 288

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            +     +EL+IVEGDSAGGSAKQ RNR NQA LPL+GKILNV  A  +K+ ++Q++  L
Sbjct: 289 QEKDPALSELYIVEGDSAGGSAKQGRNRKNQATLPLKGKILNVEKARFDKMISSQEVGTL 348

Query: 517 VQALGCRT 524
           + ALGC  
Sbjct: 349 ITALGCGI 356


>gi|220680524|dbj|BAH10751.1| DNA gyrase subunit B [Nocardia farcinica]
          Length = 400

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 116/406 (28%), Positives = 197/406 (48%), Gaps = 34/406 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  + V +      +SQ +    P   ++   +  ++ GT + F  DP+IF     +
Sbjct: 1   NALSSRVEVEIDVDGYHWSQTYKEATPSKLVK--GEPTDRTGTTVRFWADPEIFETTT-Y 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK------------------------YGIP 258
           +   + +  Q  A+L+  +    + ++                                 
Sbjct: 58  NFETVARRLQEMAFLNKGLTITLTDERVSESDVTDEIVSETAEAPKHGEPTGEAASEHKV 117

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +   +++PGGL+ +++     +  I + + +   +  G     +E A+ W       + +
Sbjct: 118 KTRTYHYPGGLEDFVRHINRTKQAIHNSVVSFTGKGTGH---ELEVAMQWNSGYSESVHT 174

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIR 375
           + NTI T EGGTHE G R ALT  + KYA+  +  +    ++  DD+      I+SV + 
Sbjct: 175 FANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDDIREGLAAIVSVKVA 234

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           EP+F GQTKTKL + + +  V+    +   H+   NP +A  +++  +  ++ R+  RK 
Sbjct: 235 EPQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIVQKAVSSAQARVAARKA 294

Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LPLRG
Sbjct: 295 RELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRG 354

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           KI+NV  A  +K+  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 KIINVEKARIDKVLKNNEVQSIITAFGTGIHDEFDISKLRYHKIVL 400


>gi|15551717|emb|CAC69400.1| DNA gyrase B subunit [Klebsiella pneumoniae]
          Length = 323

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 109/334 (32%), Positives = 177/334 (52%), Gaps = 15/334 (4%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG+SVVNALS +L + + R N +  Q +  G+P +PL    +  +
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDNKVHKQMYEHGVPQAPLAVTGET-D 59

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           K GT + F P  + F +   F+   L K  +  ++L+  V       ++  E       +
Sbjct: 60  KTGTMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------D 112

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N
Sbjct: 113 HFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTN 169

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+
Sbjct: 170 NIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPK 229

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQRE 437
           F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+        RR +  
Sbjct: 230 FSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREM 289

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
             RK A+    LPGKLADC +     +EL++VEG
Sbjct: 290 TRRKGALDLAGLPGKLADCQERDPALSELYLVEG 323


>gi|307343796|emb|CBJ19503.1| gyrase B subunit [Micromonospora sp. GUI3]
          Length = 368

 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 110/373 (29%), Positives = 192/373 (51%), Gaps = 9/373 (2%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V + +  +++ Q ++   P    +   +  ++ G+ ++F PDP +F     FD   + + 
Sbjct: 2   VEIHKSGSVWRQHYTNSKPSPLEK--GETTDRTGSAVSFWPDPDVFETV-DFDFQTIYRR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            Q  A+L+  ++     ++   E+ G   +  FY+ GG+  +++    ++S I   +   
Sbjct: 59  LQEMAFLNRALRIHLLDERVAEEEDGRQREVTFYYEGGIADFVRHLNASKSPIHKTVVEF 118

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
           + E++G    ++E A+ W E     + ++ NTI T EGGTHE G R ALT  + +Y    
Sbjct: 119 EAEEEG---MSLEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSVVNRYGTDK 175

Query: 350 QNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
           +  +    +  +D+      I+SV +  P+F GQTKTKL +   +  V+    D    + 
Sbjct: 176 KLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWF 235

Query: 409 VQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
            +NP EA  ++ +           ++ ++   RK+ +    +PGKLADC       +E+F
Sbjct: 236 DRNPAEAKMIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVF 295

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           IVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG      
Sbjct: 296 IVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGIHDD 355

Query: 528 YREEDLRYEKVII 540
           +  E LRY K+++
Sbjct: 356 FDMEKLRYHKMLL 368


>gi|254055387|gb|ACT64293.1| GryB [Pseudomonas chlororaphis]
 gi|254055389|gb|ACT64294.1| GryB [Pseudomonas chlororaphis]
 gi|254055391|gb|ACT64295.1| GryB [Pseudomonas chlororaphis]
 gi|254055393|gb|ACT64296.1| GryB [Pseudomonas chlororaphis]
 gi|254055395|gb|ACT64297.1| GryB [Pseudomonas chlororaphis]
 gi|254055397|gb|ACT64298.1| GryB [Pseudomonas sp. C1Phz26]
          Length = 362

 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 131/373 (35%), Positives = 197/373 (52%), Gaps = 16/373 (4%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS+EL +TV R   I+ Q +  G+P +P+          GT+I F+   + 
Sbjct: 1   GVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGD-SETTGTQIHFKASSET 59

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++ 
Sbjct: 60  FKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEY 111

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGL 334
              N++ ++         + G     VE A+ W +   E    + N I   +GGTH  G 
Sbjct: 112 LNTNKTAVNQVFHFNVQREDGI---GVEIALQWNDSFNENLQCFTNNIPQRDGGTHLVGF 168

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + 
Sbjct: 169 RSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEV 228

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451
           +  VE  +   F  +L++NP EA  ++  +++ +  R   RK R    RK A+    LPG
Sbjct: 229 KTAVEQEMGKYFSDFLLENPNEAKLVVGKMLDAARAREAARKAREMTRRKGALDIAGLPG 288

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +     +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q
Sbjct: 289 KLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMISSQ 348

Query: 512 QIMDLVQALGCRT 524
           ++  L+ ALGC  
Sbjct: 349 EVGTLITALGCGI 361


>gi|220680566|dbj|BAH10772.1| DNA gyrase subunit B [Nocardia sienata]
          Length = 400

 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 119/406 (29%), Positives = 196/406 (48%), Gaps = 34/406 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L   V      +SQ +   +P      + +     GT I F  DP +F     +
Sbjct: 1   NALSSRLEAEVDTDGYHWSQTYKDAVPGQL--VQGEPTKATGTTIRFWADPAVFETTT-Y 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDK------------------EIAEKYGIPEKEE-- 262
           +   + +  Q  A+L+  +    + ++                  +  +    P  E   
Sbjct: 58  NFETVSRRLQEMAFLNKGLTIVLTDERVSDIEITDEVVSDTAEAPKHDDNGEKPAAEPKV 117

Query: 263 ----FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
               +++PGGL+ +++     +  I + + +   +  G     +E A+ W       + +
Sbjct: 118 KTRTYHYPGGLEDFVRHINRTKQPIHNSVVSFNGKGTGH---ELEVAMQWNSGYSESVHT 174

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIR 375
           + NTI T EGGTHE G R ALT  + +YA+  +  +    ++  DD+      I+SV + 
Sbjct: 175 FANTINTHEGGTHEEGFRAALTTVVNRYAKEKKLLKEKDGNLTGDDIREGLAAIVSVKVS 234

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  ++   +  ++ R+  RK 
Sbjct: 235 EPQFEGQTKTKLGNTEVKSFVQRACNEHLAHWFEANPADAKTIVNKAVSSAQARVAARKA 294

Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LPLRG
Sbjct: 295 RELVRRKSATDIGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRG 354

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           KI+NV  A  +K+  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 KIINVEKARIDKVLKNAEVQSIITAFGTGIHDEFDIAKLRYHKIVL 400


>gi|220680544|dbj|BAH10761.1| DNA gyrase subunit B [Nocardia niigatensis]
          Length = 399

 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 122/405 (30%), Positives = 193/405 (47%), Gaps = 33/405 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L   V      ++Q++    P      + +   K GT I F PDP IF     F
Sbjct: 1   NALSTRLEAEVDYGGHHWTQEYKDAKPGKL--IQGEATKKTGTTIRFFPDPDIFETTT-F 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-----------------------YGIPE 259
               + +  Q  A+L+  +    +  +                                +
Sbjct: 58  SFETVARRLQEMAFLNKGLTITLTDQRIHEGDITDEVVSETAEAPKHLDENAPAAEPKVK 117

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              +++PGGL+ Y++     ++ I + I     +  G     VE A+ W       + ++
Sbjct: 118 TRTYHYPGGLEDYVRHINRTKTPIHNSIVGFTGKGTGH---EVEVAMQWNSGYSESVHTF 174

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIRE 376
            NTI T EGGTHE G R ALT  + KYA+  +  +    ++  DD+      I+SV I +
Sbjct: 175 ANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKEGNLTGDDIREGLAAIVSVKIAD 234

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F GQTKTKL + + +  V+    +   H+   NP +A  +++  +  ++ R+  RK R
Sbjct: 235 PQFEGQTKTKLGNTEVKSFVQRTCNEHISHWFEANPADAKTIVQKAVSSAQARVAARKAR 294

Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LPLRGK
Sbjct: 295 ELVRRKSATDIGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGK 354

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           I+NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 IINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDINKLRYHKIVL 399


>gi|171702758|dbj|BAG16347.1| DNA gyrase subunit B [Flavobacterium sp. GMY-13]
          Length = 356

 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 131/360 (36%), Positives = 193/360 (53%), Gaps = 9/360 (2%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            I+ Q++ RG  L P+++  +    RGTR TF PD  IF     F    L    +  ++L
Sbjct: 2   KIYEQEYERGKSLYPVKQIGETEK-RGTRQTFYPDNTIFTQTTEFSYDTLSARMRELSFL 60

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +   ++  +E+ EK      E F+   GLK Y++    NR  I S + +   +K   
Sbjct: 61  NKGITITFTDKREVNEKG-EFRSEVFHSTEGLKEYIRYLDGNREPIVSHVISMDHDK--- 116

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRA 354
               VE A+ +       I SY N I T EGGTH  G R  LTR +KKYA+ +    K  
Sbjct: 117 GEIPVEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRSGLTRTLKKYADASGMLDKLK 176

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             I  DD       I+SV + EP+F GQTKTKL + +    V  A+ +  ++YL +NP +
Sbjct: 177 FEIAGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVVSPVSQAVGEMLENYLEENPND 236

Query: 415 ATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  +++ VI  ++ R   +K RE+  RKT +    LPGKL+DCS+      E+++VEGDS
Sbjct: 237 ARVIIQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPARCEVYLVEGDS 296

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGG+AKQ R+R+ QA+LPLRGKILNV  A   K+  N++I ++  ALG    +    + L
Sbjct: 297 AGGTAKQGRDRNFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTVGTAEDSKAL 356


>gi|171702760|dbj|BAG16348.1| DNA gyrase subunit B [Flavobacterium sp. GMY-14]
 gi|171702762|dbj|BAG16349.1| DNA gyrase subunit B [Flavobacterium sp. GMY-15]
          Length = 356

 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 129/360 (35%), Positives = 193/360 (53%), Gaps = 9/360 (2%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            ++ Q++ RG  L P+++       RGT +TF PDP IF     +    L    +  ++L
Sbjct: 2   KVYEQEYERGKALYPVKQIGDTTK-RGTIVTFYPDPTIFTQTTEYSYDTLSARMRELSFL 60

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +   ++  +E  +K G    E F+   GLK Y++    NR  I   + +   EK   
Sbjct: 61  NKGITITFTDKRE-VDKDGNFLGEVFHSTEGLKEYIRYLDGNREPIIGHVISMDHEK--- 116

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRA 354
               VE A+ +       I SY N I T EGGTH  G R  LTR +KKYA+ +    K  
Sbjct: 117 GEIPVEVALIYNTSYSENIFSYVNNINTHEGGTHLQGFRSGLTRTLKKYADASGMLDKLK 176

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             I  DD       I+SV + EP+F GQTKTKL + +    V  A+ +  ++YL +NP +
Sbjct: 177 FEITGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVVSPVSQAVGEMLENYLEENPND 236

Query: 415 ATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  +++ VI  ++ R   +K RE+  RKT +    LPGKL+DCS+      E+++VEGDS
Sbjct: 237 ARIIIQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPARCEVYLVEGDS 296

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGG+AKQ R+R+ QA+LPLRGKILNV  A   K+  N++I ++  ALG    ++   + L
Sbjct: 297 AGGTAKQGRDRAFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTVGTEDDSKAL 356


>gi|89143172|emb|CAJ57483.1| DNA gyrase subunit B [Microbacterium aurantiacum]
          Length = 376

 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 116/376 (30%), Positives = 184/376 (48%), Gaps = 16/376 (4%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS  L V V RQ +++ Q ++ G        K +   + GT ITF PD  IF     FD
Sbjct: 1   ALSSRLEVEVKRQGSVWRQSYATGGVPQAPLAKGEDSTETGTTITFWPDDTIFETVV-FD 59

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDK----------EIAEKYGIPEKEEFYFPGGLKTYL 273
              L    Q  A+L+  ++     ++            A+    P  + F +  GL  Y+
Sbjct: 60  YDTLRTRFQQMAFLNKGLRISLRDERPEGLVDIDGLADADAAPQPRSDSFLYERGLVDYV 119

Query: 274 QTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           +     R          + E +    +  +E A+ W       + ++ NTI T EGGTHE
Sbjct: 120 EHLNRVRHAEVVNDEIIEVESEDTERKIALELAMQWTTSYTENVFTFANTINTHEGGTHE 179

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G R ALT  + +YA       ++  ++  +D+      ++SV + EP+F GQTKTKL +
Sbjct: 180 EGFRAALTTLVNRYARAQNLLKEKDDNLTGEDIREGLTAVISVKLSEPQFEGQTKTKLGN 239

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLR 448
            +A+  V+  + D    +  +NP++A  ++   I+ +  R+  RK RE  R+ +      
Sbjct: 240 TEAKAFVQKVVGDKLGDWFDRNPVQAKNVIRKAIDAASARMAARKARETARRKSVFESAA 299

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           +P KL DC+      +E+F+VEGDSAGGSA Q R+   QA+L LRGKILNV  A  +K  
Sbjct: 300 MPDKLKDCTSKDPSISEIFLVEGDSAGGSAVQGRDPHTQAILALRGKILNVERARLDKAL 359

Query: 509 NNQQIMDLVQALGCRT 524
           +N+++  ++QA G   
Sbjct: 360 SNKEVQAMIQAFGTGI 375


>gi|38224341|gb|AAR14131.1| DNA gyrase B subunit [Fusobacterium necrophorum subsp. necrophorum]
          Length = 403

 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 125/412 (30%), Positives = 191/412 (46%), Gaps = 16/412 (3%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRN 201
           +N  Y++SGGLHGVGISVVNALS+   V V R+  ++ QK+ RG P+  ++     +V  
Sbjct: 1   ENDNYKVSGGLHGVGISVVNALSEWTEVKVKREGNVYYQKYLRGKPVEDVKIISTLEVGE 60

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             GT +TF+PD +IF     F+   L    +  AYL+  ++      +       I +KE
Sbjct: 61  TTGTIVTFKPDIEIFETVI-FEYEVLQHRLKELAYLNRGLEINLLDCR-----NEIGKKE 114

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321
            F   GG+  +L+        + S+    + + +   +  V+ A  +     E+  +   
Sbjct: 115 SFQSEGGISDFLKEVTRENQTLLSKQIHIEGQAE---QVGVDIAFTYTTGQSEVIYFFCN 171

Query: 322 ILTDEGGTHESGLRVALTR----GIKKYAELTQNKRAISIISDDLMISAVGILSVFIREP 377
            +    G         L       I + A + + K                +        
Sbjct: 172 NIQYYRGRLSCDWISNLFNKGLLMILEKAGIFEGKGWKITRRRTFGKELGLLFRSKFHNR 231

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
              GQTKTKL + +    V   L      +L  NP +   ++E ++   + R   ++ RE
Sbjct: 232 NLEGQTKTKLGNSEVNGIVNTVLSTDLKIFLEDNPNDTKLIIEKILSSKKAREAAQRARE 291

Query: 438 VNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              + + +    LPGKLADCS       E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKI
Sbjct: 292 AVLRKSVLEVGSLPGKLADCSSKKPEECEIFLVEGDSAGGSAKQGRDRYFQAILPLKGKI 351

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548
           LNV  AG  K   + +I  +V A G     +     +   K+I+MTDADVDG
Sbjct: 352 LNVEKAGLHKALESDEIRAMVTAFGTNIGEESLIGKIEIGKIILMTDADVDG 403


>gi|307592554|gb|ADN65365.1| DNA gyrase subunit B [Chryseobacterium sp. CTM]
          Length = 237

 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 93/238 (39%), Positives = 153/238 (64%), Gaps = 7/238 (2%)

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA- 443
           TKL + +    V+  + +   ++L +NP EA  +++ V+  ++ R   +K RE+ ++ + 
Sbjct: 1   TKLGNSEVSGAVDKIVGEMLTNFLEENPNEAKLIVQKVVLAAKARQAAKKAREMVQRKSP 60

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKL+DCS      +ELF+VEGDSAGG+AKQ R+R  QA+LPLRGKILNV  + 
Sbjct: 61  MGGSGLPGKLSDCSSKSPEESELFLVEGDSAGGTAKQGRDRHFQAILPLRGKILNVEKSM 120

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTF 558
             K+ +N++I ++  ALG    ++          LRY KV+IMTDAD+DG+HI++L+LTF
Sbjct: 121 LHKVYDNEEIKNIYTALGVSVGTEEDSKALNMAKLRYHKVVIMTDADIDGSHISTLILTF 180

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616
           F++ M +LIE  ++++  PPL+ + +G K  +AH+E+ +++   +    GKG +E+ R
Sbjct: 181 FFRYMKELIENGYIYIAQPPLYTLKKGNKKAHAHNEKEREEFTLDMSPDGKG-VEVQR 237


>gi|327200385|gb|AEA36072.1| DNA gyrase subunit B [Sinorhizobium meliloti]
          Length = 358

 Score =  180 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 133/367 (36%), Positives = 199/367 (54%), Gaps = 13/367 (3%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  L + + R   I    F+ G+   PL+       +  T +T 
Sbjct: 1   VSGGLHGVGVSVVNALSVSLKLKIRRAGKIHEMSFTHGVADGPLKVTGDAGGETRTEVTL 60

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F +   F+   L    +  A+L+  V+   +  +    +     +EE  + GGL
Sbjct: 61  TPSEQTFSNI-EFEFGTLEHRLRELAFLNSGVRIVLTDKRHSDIR-----QEEMMYDGGL 114

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328
           + ++      +  +  +  +   E+ G    TVE A+ W +   E    + N I   +GG
Sbjct: 115 EAFVAYLDRAKKPLVQKPVSICGERDGI---TVEVAMWWNDSYHENVLCFTNNIPQRDGG 171

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR I  YA+ +    K  +S+  DD       +LSV + +P+F+ QTK K
Sbjct: 172 THMAGFRGALTRQITSYADTSGITKKEKVSLTGDDCREGLTAVLSVKVPDPKFSSQTKDK 231

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           LVS + +  VE+ + +    +L ++P +A  L+  V+E +  R   RK RE   RK A+ 
Sbjct: 232 LVSSEVRPVVESLVNEALSVWLEEHPSDAKILVGKVVEAAAAREAARKARELTRRKGALD 291

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKLADCS+     +ELF+VEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  +
Sbjct: 292 ISSLPGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 351

Query: 506 KIRNNQQ 512
           K+ ++Q+
Sbjct: 352 KMLSSQE 358


>gi|148762367|dbj|BAF63885.1| DNA gyrase subunit B [Halobacillus litoralis]
          Length = 325

 Score =  180 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 121/336 (36%), Positives = 179/336 (53%), Gaps = 15/336 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG SVVNALS +L V V R   I  Q + RG+P   L+   +  ++ GTRI
Sbjct: 1   YKVCGGLHGVGASVVNALSTKLEVFVHRDGNIHYQAYHRGVPEEDLKVIGET-DQTGTRI 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PDP+IF +   +    L    +  A+L+  +       +   E         +YF G
Sbjct: 60  QFKPDPEIFSETEEYKFEILANRLRELAFLNKGLTITIEDKRTDEE------PVNYYFEG 113

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+ +Y++     R  +  + F  + E+      ++E A+ + +     I SY N I T E
Sbjct: 114 GILSYVEHMNRTRETLH-DAFFIEDEQD---EISIEIAMQYNDGFASNIYSYANNIHTYE 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTHESG +  LTR I  YA      +    ++  DD+      I+S+   +P+F GQTK
Sbjct: 170 GGTHESGFKTGLTRVINDYARKNNMFKETDPNLTGDDVREGLTAIISIKHPDPQFEGQTK 229

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
           TKL + +A+   ++   + F  +L +NP  A  ++E  +  S  R+  +K RE   RK A
Sbjct: 230 TKLGNSEARTVTDSLFSESFTKFLFENPNMAKTIVEKGLMASRARMAAKKARELTRRKNA 289

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADCS   A+ +EL+IVEGDSAGGSAK
Sbjct: 290 LEVSNLPGKLADCSSKDANISELYIVEGDSAGGSAK 325


>gi|15551683|emb|CAC69425.1| DNA gyrase B subunit [Serratia odorifera]
          Length = 323

 Score =  180 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 105/334 (31%), Positives = 177/334 (52%), Gaps = 15/334 (4%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG+SVVNALS++L + + R+  +  Q +S G P +PL+   +   
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYSHGEPQTPLKVVGET-E 59

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           + GT + F P  + F ++  F    L K  +  ++L+  V       ++  E       +
Sbjct: 60  QTGTTVRFWPSYQTFTNQTEFQYDILAKRLRELSFLNSGVSIRLKDKRDDKE-------D 112

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F++ GG+K +++   +N++ I   +F   T K       VE A+ W +     I  + N
Sbjct: 113 HFHYEGGIKAFVEYLNKNKTPIHPTVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTN 169

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I   +GGTH +G R A+TR +  Y +      K  IS   DD     + ++SV + +P+
Sbjct: 170 NIPQRDGGTHLAGFRAAMTRTLNNYMDKEGYSKKSKISATGDDAREGLIAVVSVKVPDPK 229

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQRE 437
           F+ QTK KLVS + +  VE+ + +    YL++NP +A  ++  +I+        R+ +  
Sbjct: 230 FSSQTKDKLVSSEVKTAVESLMNEKLVDYLMENPNDAKIVVGKIIDAARAREAARKAREM 289

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
             RK A+    LPGKLADC +     +EL++VEG
Sbjct: 290 TRRKGALDLAGLPGKLADCQERDPAMSELYLVEG 323


>gi|15919890|dbj|BAB69454.1| gyrase subunitB [Salmonella paratyphi]
          Length = 199

 Score =  180 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 83/173 (47%), Positives = 118/173 (68%), Gaps = 1/173 (0%)

Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKI
Sbjct: 15  MTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI 74

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLL 555
           LNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LL
Sbjct: 75  LNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLL 134

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           LTFFY++M +++E+ H+++  PPL+++ +G +  Y  D+E   +        G
Sbjct: 135 LTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 187


>gi|188037414|gb|ACD46323.1| DNA gyrase subunit B [Providencia burhodogranariea]
          Length = 270

 Score =  180 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 89/279 (31%), Positives = 146/279 (52%), Gaps = 14/279 (5%)

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
           +    S+ E+I+T LHAGGKFD+ +Y++SGGLHGVG+SVVNALS++L + + R   +  Q
Sbjct: 3   EEEGISSAEVIMTVLHAGGKFDDYSYKVSGGLHGVGVSVVNALSEKLELVIRRDGEVHEQ 62

Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
            +S G+P   L    +  ++ GT + F P    F     F+   L K  +  ++L+  V 
Sbjct: 63  VYSHGVPQGALTVVGET-DQTGTFVRFWPSYDTFKTVTEFEYDILAKRLRELSFLNSGVS 121

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
                 ++  E       + F++ GG+K +++    N++ I   +F   TEK G     V
Sbjct: 122 IRLIDKRDGKE-------DHFHYEGGIKAFVEYLSRNKTPIHPSVFYFSTEKDGI---GV 171

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359
           E ++ W +     +  + N I   +GGTH +G R A+TR +  Y +      K  +S   
Sbjct: 172 EVSMQWNDGFQENVYCFTNNIPQRDGGTHLAGFRAAMTRTLNNYMDKEGYHKKSKVSATG 231

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
           DD     + ++SV + +P+F+ QTK KLVS + +  VE 
Sbjct: 232 DDAREGLIAVISVKVPDPKFSSQTKEKLVSSEVKTAVET 270


>gi|148762389|dbj|BAF63896.1| DNA gyrase subunit B [Halobacillus sp. S1-5]
          Length = 325

 Score =  180 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 119/336 (35%), Positives = 177/336 (52%), Gaps = 15/336 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG SVVNALS +L V V R   I  Q + RG+P   L+   +  ++ GTRI
Sbjct: 1   YKVCGGLHGVGASVVNALSTKLEVFVHRDGQIHYQSYKRGVPEEDLKVVGET-DQTGTRI 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F PD +IF +   +    L    +  A+L+  +       +   +        ++Y+ G
Sbjct: 60  HFIPDDEIFQETQEYKFEILANRLRELAFLNKGLTITIEDKRTDED------PVDYYYEG 113

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+ +Y++     R  I  + F  + E+      ++E A+ + +     I SY N I T E
Sbjct: 114 GILSYVEHMNRTREAIH-DAFFIEGEQDEI---SIEIAMQYNDGFASNIYSYANNIHTYE 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTHESG +  LTR I  YA      +    ++  DD+      I+S+   +P+F GQTK
Sbjct: 170 GGTHESGFKTGLTRVINDYARKNSMFKETDPNLTGDDVREGLTAIISIKHPDPQFEGQTK 229

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
           TKL + +A+   +    + F  +L +NP  A  ++E  +  S  R+  +K RE   RK A
Sbjct: 230 TKLGNSEARTVTDALFSESFSKFLFENPTMAKTIVEKGLMASRARMAAKKARELTRRKNA 289

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADCS   A+ +EL+IVEGDSAGGSAK
Sbjct: 290 LEVSNLPGKLADCSSKDANISELYIVEGDSAGGSAK 325


>gi|32364166|gb|AAP80231.1| GyrB [Lonepinella koalarum]
          Length = 366

 Score =  180 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 130/378 (34%), Positives = 205/378 (54%), Gaps = 17/378 (4%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALSD+L + + RQ  ++ Q +  G P +PL +        GT + F P   IF     F
Sbjct: 1   NALSDKLLLIIRRQGHVYEQTYHLGEPQAPLAQIGDTSK-TGTTVRFWPSSTIFSKTV-F 58

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L K  +  ++L+  V      +++         ++ F++ GG++ +++   +N++ 
Sbjct: 59  EYEILKKRLRELSFLNSGVSIKLFDERD-------GTQDHFHYEGGIQAFVEYLNQNKTP 111

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           I  + F    EK G     VE ++ W +     I  + N I   +GGTH +G R ALTR 
Sbjct: 112 IHPKPFYFSMEKDGI---GVEISLQWNDSYNENIYCFTNNIPQRDGGTHLAGFRGALTRT 168

Query: 342 IKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +  Y E +    K  +    DD     V I+SV + +P+F+ QTK KLVS + +  VE+ 
Sbjct: 169 LNSYMEKSGLNKKAKVETSGDDAREGLVAIVSVKVPDPKFSSQTKDKLVSSEVKGAVESV 228

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458
           + + F  YL +NP +A  +   +++ +  R   RK RE+ R+   +    LPGKLADC +
Sbjct: 229 MNEAFAGYLEENPNDAKIIATKIVDAARAREAARKAREMTRRKGVLDIAGLPGKLADCQE 288

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ 
Sbjct: 289 RDPAFSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVGTLIT 348

Query: 519 ALGCRT-RSQYREEDLRY 535
           ALGC   R +Y  + +RY
Sbjct: 349 ALGCGIGRDEYNPDKMRY 366


>gi|110624483|dbj|BAE98188.1| DNA gyrase B subunit [Shewanella colwelliana]
          Length = 367

 Score =  180 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 129/378 (34%), Positives = 201/378 (53%), Gaps = 15/378 (3%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS++L +T+ R   ++ Q ++ G+P  P++         GT I F P  + F D
Sbjct: 1   VSVVNALSEKLQMTIRRDGKLYEQFYTHGVPNEPIKAIGDAT-TTGTEIRFWPSGETFTD 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      +++  +       E F + GG+  ++     
Sbjct: 60  V-EFHFDILAKRVRELSFLNSGVGIRLVDERDNRD-------EFFKYEGGISAFVDYLNV 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++ E+F    E++     TVE A+ W +     I  + N I   +GGTH +G R A
Sbjct: 112 NKTPVNKEVFHFIQERED--GITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRSA 169

Query: 338 LTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y +      K   S   DD       ++SV + +P+F+ QTK KLVS + +  
Sbjct: 170 LTRNLNTYMDREGFNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTA 229

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454
           VE  + +    YL+++P EA  ++  +I+ +  R   RK R    RK A+    LPGKLA
Sbjct: 230 VEQTMGEQLGDYLMEHPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLA 289

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++ 
Sbjct: 290 DCQEKDPALSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 349

Query: 515 DLVQALGCRTRSQYREED 532
            L+ ALGC       + D
Sbjct: 350 TLITALGCGIGRDEYDPD 367


>gi|29652671|gb|AAO87305.1| DNA gyrase B [Listeria monocytogenes]
          Length = 153

 Score =  180 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 69/153 (45%), Positives = 96/153 (62%), Gaps = 2/153 (1%)

Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523
           +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I  N++I  +  A+G  
Sbjct: 3   SELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEEIRTIFTAMGTG 62

Query: 524 TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT 583
               +     RY K+IIMTDADVDGAHI +LLLT FY+ M  L++  ++++  PPL++I 
Sbjct: 63  FGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIK 122

Query: 584 QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616
            G +  Y + +   +  L      G  K  I R
Sbjct: 123 HGKQIEYVYSDGQLEDYLASL--DGDTKYSIQR 153


>gi|190148848|gb|ACE63399.1| DNA gyrase B subunit [Pseudonocardia halophobica]
          Length = 368

 Score =  180 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 115/374 (30%), Positives = 191/374 (51%), Gaps = 20/374 (5%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L V +     +++Q++   +P    +   +   + GT ITF  DP IF     +
Sbjct: 1   NALSSRLDVEINVGGHVWTQRYDHSVPGVLHK--GEATKRTGTSITFWADPTIFETTT-Y 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP----------EKEEFYFPGGLKTY 272
           +   + +  Q  A+L+  +      ++    +              +++ F++PGGL+ +
Sbjct: 58  NLETIQRRLQEMAFLNKGLTIVLRDERNGESEEAEEPDAEGFVAKVKEQTFHYPGGLEDF 117

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           +    +++  I  ++     E  G     +E A+ W       + ++ NTI T EGGTHE
Sbjct: 118 VAHLNKSKDPIHRKVIGYTGEGPGHQ---IEVAMQWNSGYSESVYTFANTINTHEGGTHE 174

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G R ALT  + +YA   +   ++  ++  DD+      I+SV + EP+F GQTKTKL +
Sbjct: 175 EGFRSALTTTVNRYARDKKLLKEKDPALSGDDIREGLAAIVSVKVAEPQFEGQTKTKLGN 234

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448
            + +  V+    +    +  +NP EA  ++   +  ++ RL  RK RE V RK+A     
Sbjct: 235 TEVKSFVQKISNEWLSDWFERNPAEAKIIVNKAVSSAQARLAARKARELVRRKSAGDIGG 294

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LP+RGKI+NV  A  +++ 
Sbjct: 295 LPGKLADCRSTDPTKSEVYIVEGDSAGGSAKSGRDSMYQAILPIRGKIINVEKARIDRVL 354

Query: 509 NNQQIMDLVQALGC 522
            N ++  ++ ALG 
Sbjct: 355 KNTEVQSIITALGT 368


>gi|220680556|dbj|BAH10767.1| DNA gyrase subunit B [Nocardia pseudobrasiliensis]
          Length = 398

 Score =  180 bits (456), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 124/404 (30%), Positives = 199/404 (49%), Gaps = 32/404 (7%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L   V      +SQ++    P      +     + GT I F PDP+IF     F
Sbjct: 1   NALSSRLEADVDFGGYHWSQEYKDAKPGKL--IQGDATKRTGTTIRFWPDPEIFETTT-F 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSC---------DKEIAEKYGIPEKEE----------- 262
           +   + +  Q  A+L+  +    +          D+ ++E    P+ +            
Sbjct: 58  NFETVARRLQEMAFLNKGLTITLTDQRVSQSDITDEVVSETAEAPKADTIGAPIEAKVKT 117

Query: 263 --FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
             +++PGGL+ +++     +  I + I     +  G     VE A+ W       + ++ 
Sbjct: 118 RTYHYPGGLEDFVKHINRTKQSIHNSIVAFTGKGTGH---EVEVAMQWNSGYSESVHTFA 174

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREP 377
           NTI T EGGTHE G R ALT  + KYA+  +  +    ++  DD+      I+SV I +P
Sbjct: 175 NTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKDKDGNLTGDDIREGLTAIVSVKIADP 234

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F GQTKTKL + + +  V+    +   H+   NP +A  +++  +  ++ R+  RK RE
Sbjct: 235 QFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQKAVSSAQARIAARKARE 294

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
            V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LP+RGKI
Sbjct: 295 LVRRKSATDLGGLPGKLADCRSKDPKLSEIYIVEGDSAGGSAKSGRDSMYQAILPIRGKI 354

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +NV  A  +++  N ++  ++ A G     ++    LRY K+I+
Sbjct: 355 INVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYHKIIL 398


>gi|118201788|gb|ABK79707.1| DNA gyrase subunit b [Octadecabacter arcticus]
          Length = 357

 Score =  180 bits (456), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 122/366 (33%), Positives = 186/366 (50%), Gaps = 13/366 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALSD L + + R       +F  G  +  LE      ++ GT + F      F ++  F
Sbjct: 1   NALSDYLELRIWRNGKEHYARFEGGFTVKHLEVVADCGDRTGTEVRFLASLDTFSNR-DF 59

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  A+L+  V+   + ++            E Y+ GG+K +++    +++ 
Sbjct: 60  YFETLEKRLRELAFLNSGVRIILTDER-----PAEHLVSELYYDGGVKEFVKYLDRSKTS 114

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           I  E      E+       VE A+ W +   E+   + N I   +GGTH +G R ALTR 
Sbjct: 115 ILPEPIYVIGERDEI---VVEVAMWWNDSYNEMVLPFTNNIPQRDGGTHMAGFRAALTRT 171

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  YA+ +    K  IS   DD       +LSV + +P+F+ QTK KLVS + +  VEN 
Sbjct: 172 INNYAQSSGIAKKEKISFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENI 231

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    +  +NP  A  ++  ++E +  R   RK R+   RKTA+    L GKL DCS+
Sbjct: 232 MNEKLSEWFEENPQIARIVVSKIVEAAHAREAARKARDLTRRKTAMDVNFLAGKLKDCSE 291

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TE+F+VEGDSAGGSA+  R+R  QA+LPL+GKILNV  A  +++  +Q+I +LV 
Sbjct: 292 KDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVM 351

Query: 519 ALGCRT 524
           ALG   
Sbjct: 352 ALGTGI 357


>gi|218937745|gb|ACL13032.1| DNA gyrase subunit B [Lactobacillus psittaci]
          Length = 361

 Score =  180 bits (456), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 125/366 (34%), Positives = 193/366 (52%), Gaps = 13/366 (3%)

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220
           VNALS ++ VTV R    +   F  G     L++   V  ++ GT + F PDP IF +  
Sbjct: 1   VNALSTKVEVTVMRDGKKYFIDFDHGRVKHELKEIGTVDPSQHGTIVHFYPDPDIFTETI 60

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   L K  Q  A+L+  +K  ++  ++ +      E + +++ GG+K Y+    +  
Sbjct: 61  VFDDKILKKRIQELAFLNKGLKLTFTDKRKDS-----AETDVYHYEGGIKEYVAFLDKKE 115

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
             +       + +  G     VE A+ +       + ++ N I T EGG HE+G + ALT
Sbjct: 116 EKLFDTPVYVEGDYDGI---NVEVALQYTTGYKTTLMTFANNIHTYEGGMHEAGFKTALT 172

Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  YA   +  +    ++  +D+      ++S+    P+F GQTKTKL + DA+  V+
Sbjct: 173 RVINDYARKAKIFKDSDTNLSGEDIREGMTAVISIKHPNPQFEGQTKTKLGNSDARAAVD 232

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
            A  + F  +L++NP    K++E      + R+  ++ RE   +K+ +    LPGKLAD 
Sbjct: 233 KAFSEAFSKFLLENPSVGRKIVEKGQLAEKARIAAKRAREVTRKKSGLEIANLPGKLADN 292

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           + N    +ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I  NQ+I  L
Sbjct: 293 TSNDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQEIRTL 352

Query: 517 VQALGC 522
             ALG 
Sbjct: 353 FTALGT 358


>gi|207107890|dbj|BAG71957.1| DNA gyrase subunit B [Gordonia amarae]
          Length = 411

 Score =  180 bits (456), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 122/415 (29%), Positives = 195/415 (46%), Gaps = 36/415 (8%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           GISVVNALS ++ + + R    +SQ +    P +    +     K GT   F PDP IF 
Sbjct: 1   GISVVNALSTKVELEIKRDGFQWSQTYLNSEPQTLH--QGAASRKTGTTTRFWPDPAIFT 58

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------------------- 258
           +   F+A  + +  Q  A+L+  +    + ++  A +                       
Sbjct: 59  ETTRFNAETVARRLQEMAFLNKGLTITLTDNRPQAVEAPGDPNGDGDTPGGTELAEVVQS 118

Query: 259 ---------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
                    +   +++  GL  Y++    N+   +    +            VE A+ W 
Sbjct: 119 PAQKATAKSKTRTYHYADGLIDYIKHI--NKRSKNPIHQSVIGFSGKGTGHEVEIAMQWN 176

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISA 366
           +     I ++ NTI T EGGTHE G R ALT  + KYA   +   ++   +  DD+    
Sbjct: 177 DGYSESIHTFANTINTHEGGTHEEGFRAALTSTVNKYAADKKLIKEKDTKLTGDDIREGL 236

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER- 425
             ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP EA  +++  ++  
Sbjct: 237 AAVISVKVSDPQFEGQTKTKLGNTEVKGFVQKICNEHLAHWFESNPAEAKNIIKKAVDSA 296

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
                 RR +  V RKTA     LPGKLADC  N     E++IVEGDSAGGSAK  R+  
Sbjct: 297 QARAAARRARDMVRRKTATDIGGLPGKLADCRSNDPALCEVYIVEGDSAGGSAKSGRDSM 356

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            QA+LP+RGKI+NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 357 YQAILPIRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDIAKLRYHKIVL 411


>gi|307343870|emb|CBJ19540.1| gyrase B subunit [Micromonospora sp. SR2]
          Length = 368

 Score =  180 bits (456), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 110/373 (29%), Positives = 191/373 (51%), Gaps = 9/373 (2%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V + +   ++ Q ++   P    +   +  ++ G+ ++F PDP +F     FD   + + 
Sbjct: 2   VEIHKSGNVWRQHYTNSKPSPLEK--GEATDRTGSAVSFWPDPDVFETV-DFDFQTIYRR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            Q  A+L+  ++     ++   E+ G   +  FY+ GG+  +++    ++S I   +   
Sbjct: 59  LQEMAFLNRALRIHLLDERVAEEEDGRQREVTFYYEGGIADFVRHLNASKSPIHKTVVEF 118

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
           + E++G    ++E A+ W E     + ++ NTI T EGGTHE G R ALT  + +Y    
Sbjct: 119 EAEEEG---MSLEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSVVNRYGTDK 175

Query: 350 QNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
           +  +    +  +D+      I+SV +  P+F GQTKTKL +   +  V+    D    + 
Sbjct: 176 KLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWF 235

Query: 409 VQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
            +NP EA  ++ +           ++ ++   RK+ +    +PGKLADC       +E+F
Sbjct: 236 DRNPAEAKMIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVF 295

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           IVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG      
Sbjct: 296 IVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGIHDD 355

Query: 528 YREEDLRYEKVII 540
           +  E LRY K+++
Sbjct: 356 FDMEKLRYHKMLL 368


>gi|148762361|dbj|BAF63882.1| DNA gyrase subunit B [Halobacillus halophilus]
          Length = 325

 Score =  180 bits (456), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 117/336 (34%), Positives = 177/336 (52%), Gaps = 15/336 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG SVVNALS +L V V R   I  Q F RG+P   L+         GTRI
Sbjct: 1   YKVCGGLHGVGASVVNALSSKLEVFVHRDGKIHYQAFHRGVPEEDLKVIGDT-EITGTRI 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PD +IF +   ++   L   T+  A+L+  +       +   E         +Y+ G
Sbjct: 60  QFKPDEQIFTETVEYNFETLATRTRELAFLNRGLTISIEDKRTDEE------PVSYYYEG 113

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+++Y++     R ++    F  ++E+      ++E A+ + +     + SY N I T E
Sbjct: 114 GIRSYVEHLNRTREVLHEP-FFIESEQDDI---SIEIALQYNDGFASNLYSYANNIHTYE 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTHESG +  LTR I  YA      + +  ++  DD+      I+S+   +P+F GQTK
Sbjct: 170 GGTHESGFKTGLTRVINDYARKNNMFKDMDPNLTGDDVREGLTAIISIKHPDPQFEGQTK 229

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
           TKL + +A+   +    + F  +L +NP  A  ++E  +  S  R+  +K RE   RK A
Sbjct: 230 TKLGNSEARTVTDALFSEGFSKFLFENPNMARIVVEKGLMASRARMAAKKARELTRRKNA 289

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADCS      +E+++VEGDSAGGSAK
Sbjct: 290 LEVSNLPGKLADCSSKDPSISEIYVVEGDSAGGSAK 325


>gi|220680580|dbj|BAH10779.1| DNA gyrase subunit B [Nocardia vaccinii]
          Length = 398

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 120/404 (29%), Positives = 195/404 (48%), Gaps = 32/404 (7%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L   +      +SQ++    P      + +   + GT I F PDP IF     F
Sbjct: 1   NALSTRLQAEIDYDGHHWSQEYKDAKPGKL--IQGESTKRTGTTIRFWPDPNIFETTL-F 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDK----------------------EIAEKYGIPEK 260
           +   + +  Q  A+L+  +    + ++                      E A      + 
Sbjct: 58  NFETVSRRLQEMAFLNKGLTITLTDERVTQSEVTEEVVSEHAEAPKHAEEAAPAEHKVKS 117

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
             +++PGGL+ +++     +  I + +     +  G     +E A+ W       + ++ 
Sbjct: 118 RTYHYPGGLEDFVKHINRTKQPIHNTVVAFTGKGTGH---ELEVAMQWNSGYSESVHTFA 174

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREP 377
           NTI T EGGTHE G R ALT  + KYA+  +  +    ++  DD+      I+SV + EP
Sbjct: 175 NTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDDIREGLAAIVSVKVGEP 234

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F GQTKTKL + + +  V+    +   H+   NP +A  ++   +  ++ R+  RK RE
Sbjct: 235 QFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVNKAVSSAQARVAARKARE 294

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
            V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LPLRGKI
Sbjct: 295 LVRRKSATDLGGLPGKLADCRSKDPTKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKI 354

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 INVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYHKIVL 398


>gi|89143176|emb|CAJ57485.1| DNA gyrase subunit B [Microbacterium chocolatum]
          Length = 375

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 115/375 (30%), Positives = 183/375 (48%), Gaps = 16/375 (4%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LS  L V V RQ +++ Q ++ G        K +   + GT ITF PD  IF     FD 
Sbjct: 1   LSSRLEVEVKRQGSVWRQSYATGGVPQAPLAKGEDSTETGTTITFWPDDTIFETVV-FDY 59

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDK----------EIAEKYGIPEKEEFYFPGGLKTYLQ 274
             L    Q  A+L+  ++     ++            A+    P  + F +  GL  Y++
Sbjct: 60  DTLRTRFQQMAFLNKGLRISLRDERPEGLVDIDGLADADAAPQPRSDSFLYERGLVDYVE 119

Query: 275 TKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
                R          + E +    +  +E A+ W       + ++ NTI T EGGTHE 
Sbjct: 120 HLNRVRHAEVVNDEIIEVESEDTERKIAMELAMQWTTSYTENVFTFANTINTHEGGTHEE 179

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALT  + +YA       ++  ++  +D+      ++SV + EP+F GQTKTKL + 
Sbjct: 180 GFRAALTTLVNRYARAQNLLKEKDDNLTGEDIREGLTAVISVKLSEPQFEGQTKTKLGNT 239

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRL 449
           +A+  V+  + D    +  +NP++A  ++   I+ +  R+  RK RE  R+ +      +
Sbjct: 240 EAKAFVQKVVGDKLGDWFDRNPVQAKNVIRKAIDAASARMAARKARETARRKSVFESAAM 299

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           P KL DC+      +E+F+VEGDSAGGSA Q R+   QA+L LRGKILNV  A  +K  +
Sbjct: 300 PDKLKDCTSKDPSISEIFLVEGDSAGGSAVQGRDPHTQAILALRGKILNVERARLDKALS 359

Query: 510 NQQIMDLVQALGCRT 524
           N+++  ++QA G   
Sbjct: 360 NKEVQAMIQAFGTGI 374


>gi|26328987|dbj|BAC28232.1| unnamed protein product [Mus musculus]
          Length = 1028

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 81/174 (46%), Gaps = 11/174 (6%)

Query: 507 IRNNQQIMDLVQALGCRTRSQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQE 562
           I  N +I ++++ +G + +  Y +ED    LRY K++IMTD D DG+HI  LL+ F +  
Sbjct: 1   IMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHN 60

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
              L+  + L     P+ ++++  + +  +     ++       H   K ++  +KGLG 
Sbjct: 61  WPSLLRHRFLEEFITPIVKVSKNKQEIAFYSLPEFEEWKSSTPNH--KKWKVKYYKGLGT 118

Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
             + + KE   D  +   ++ + +           + +K    + D+R +++  
Sbjct: 119 STSKEAKEYFADMKRHR-IQFKYS-GPEDDAAISLAFSK---KQVDDRKEWLTN 167


>gi|112732542|dbj|BAF03048.1| DNA gyrase subunit B [Pasteurella pneumotropica]
          Length = 354

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 131/366 (35%), Positives = 196/366 (53%), Gaps = 16/366 (4%)

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SV NALSD+L +T+ RQ  +  Q +  G P  PL          GT + F P P IF   
Sbjct: 1   SVDNALSDKLQLTIRRQGHVHEQFYHLGEPQMPLTIIGDT-EATGTSVRFWPSPDIFA-I 58

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             FD   L K  +  ++L+  V       ++  E       + F++ GG++ +++   +N
Sbjct: 59  TTFDYKILAKRLRELSFLNSGVSIRLVDKRDGTE-------DHFHYEGGIQAFVEYLNKN 111

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVAL 338
           ++ I  + F    EK G     VE A+ W +  N  +  + N I   +GGTH +G R AL
Sbjct: 112 KNPIHPKPFYFTAEKDGI---GVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGAL 168

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  Y E      K  ++   DD     V I+SV + +P+F+ QTK KLVS + +  V
Sbjct: 169 TRSLNSYMENEGLLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAV 228

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455
           E+A+ +    YL++NP +A  ++  +I  +  R   RK R    RK A+    LPGKLAD
Sbjct: 229 ESAMNEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPGKLAD 288

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +     +EL++VEGDSAGGSAK  R+R  QA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 289 CQEKDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGT 348

Query: 516 LVQALG 521
           L+ ALG
Sbjct: 349 LITALG 354


>gi|148762357|dbj|BAF63880.1| DNA gyrase subunit B [Halobacillus aidingensis]
          Length = 325

 Score =  180 bits (455), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 121/336 (36%), Positives = 179/336 (53%), Gaps = 15/336 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG SVVNALS +L V V R   I  Q + RG+P   L+   +  ++ GTRI
Sbjct: 1   YKVFGGLHGVGASVVNALSTKLEVFVHRDGNIHYQAYHRGVPEEDLKVIGET-DQTGTRI 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PDP+IF +   +    L    +  A+L+  +       +   E         +YF G
Sbjct: 60  QFKPDPEIFSETEEYKFEILANRLRELAFLNKGLTITIEDKRTDEE------PVNYYFEG 113

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+ +Y++     R  +  + F  + E+      ++E A+ + +     I SY N I T E
Sbjct: 114 GILSYVEHMNRTRETLH-DAFFIEDEQD---EISIEIAMQYNDGFASNIYSYANNIHTYE 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTHESG +  LTR I  YA      +    ++  DD+      I+S+   +P+F GQTK
Sbjct: 170 GGTHESGFKTGLTRVINDYARKNNMFKETDPNLTGDDVREGLTAIISIKHPDPQFEGQTK 229

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
           TKL + +A+   ++   + F  +L +NP  A  ++E  +  S  R+  +K RE   RK A
Sbjct: 230 TKLGNSEARTVTDSLFSERFTKFLFENPNMAKTIVEKGLMASRARMAAKKARELTRRKNA 289

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADCS   A+ +EL+IVEGDSAGGSAK
Sbjct: 290 LEVSNLPGKLADCSSKDANISELYIVEGDSAGGSAK 325


>gi|71833800|emb|CAI94339.1| gyrase B [Helicobacter salomonis]
          Length = 365

 Score =  180 bits (455), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 139/373 (37%), Positives = 211/373 (56%), Gaps = 17/373 (4%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS +L +T+ R+  I+ Q+F +GIP +PLE     +  RGT I F PD
Sbjct: 1   GLHGVGVSVVNALSIKLIMTIYREGQIYRQEFEKGIPTTPLEVVGTTKK-RGTTIEFFPD 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P+I      FD+A L +  Q  AYL+ ++   +               E +++  GLK +
Sbjct: 60  PQIMEVV-AFDSAILKRRFQEMAYLNNKITLEFHDQ-------PAQVHESYHYQDGLKQF 111

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHE 331
           +      ++ + SEI     + +G     VE A+A+ E   E   S+ N I T EGGTHE
Sbjct: 112 I--IDSQKTPLISEIIAFNAQVEG---MEVEVALAYNESYEEQTFSFVNNIRTTEGGTHE 166

Query: 332 SGLRVALTRGIKKYAELTQNKRA-ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           SG ++ L++ I  Y + + + R   S++ +D+      I+S+ + +P+F GQTK+KL S 
Sbjct: 167 SGFKMGLSKAILNYIQESGSSRESASVVQEDVREGLSAIISLKLLDPQFEGQTKSKLGSS 226

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
             +  V   + +    Y  +NP  A  +++ V+  +  R   +K RE   +K ++    L
Sbjct: 227 FVRPIVAKLVYEKVAKYFEENPSIAKAIVQKVLLAARGREAAKKAREITRKKDSLSVGTL 286

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC       +EL++VEGDSAGGSAKQ R+R+ QA+LPLRGKILNV  A   KI  
Sbjct: 287 PGKLADCQSKDPRESELYLVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKAHLGKILK 346

Query: 510 NQQIMDLVQALGC 522
           +++I +++ A GC
Sbjct: 347 SEEIKNMITAFGC 359


>gi|171702714|dbj|BAG16325.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-47]
          Length = 356

 Score =  180 bits (455), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 129/360 (35%), Positives = 194/360 (53%), Gaps = 9/360 (2%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            ++ Q++ RG  L P+++  +    RGT +TF PDP IF     +    L    +  ++L
Sbjct: 2   KVYEQEYERGKALYPVKQIGETTK-RGTIVTFYPDPTIFTQTTEYSYDTLSARMRELSFL 60

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +   ++  +E  +K G    E F+   GLK Y++    NR  I   + +   EK   
Sbjct: 61  NKGISITFTDKRE-VDKDGNFLGEVFHSTEGLKEYIRYLDGNREPIIGHVISMDHEK--- 116

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRA 354
               VE A+ +       I SY N I T EGGTH  G R  LTR +KKYA+ +    K  
Sbjct: 117 GEIPVEVALIYNTSYSENIFSYVNNINTHEGGTHLQGFRSGLTRTLKKYADASGMLDKLK 176

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             I  DD       I+SV + EP+F GQTKTKL + +    V  A+ +  ++YL +NP +
Sbjct: 177 FEITGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVVSPVSQAVGEMLENYLEENPND 236

Query: 415 ATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  +++ VI  ++ R   +K RE+  RKT +    LPGKL+DCS+      E+++VEGDS
Sbjct: 237 ARIIIQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPARCEVYLVEGDS 296

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGG+AKQ R+R+ QA+LPLRGKILNV  A   K+  N++I ++  ALG    ++   + L
Sbjct: 297 AGGTAKQGRDRAFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTVGTEDDSKAL 356


>gi|148762379|dbj|BAF63891.1| DNA gyrase subunit B [Halobacillus trueperi]
          Length = 325

 Score =  180 bits (455), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 121/336 (36%), Positives = 179/336 (53%), Gaps = 15/336 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG SVVNALS +L V V R   I  Q + RG+P   L+   +  ++ GTRI
Sbjct: 1   YKVFGGLHGVGASVVNALSTKLEVFVHRDGNIHYQAYHRGVPEEDLKVIGET-DQTGTRI 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PDP+IF +   +    L    +  A+L+  +       +   E         +YF G
Sbjct: 60  QFKPDPEIFSETEEYKFEILANRLRELAFLNKGLTITIEDKRTDEE------PVNYYFEG 113

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+ +Y++     R  +  + F  + E+      ++E A+ + +     I SY N I T E
Sbjct: 114 GILSYVEHMNRTRETLH-DAFFIEDEQD---EISIEIAMQYNDGFASNIYSYANNIHTYE 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTHESG +  LTR I  YA      +    ++  DD+      I+S+   +P+F GQTK
Sbjct: 170 GGTHESGFKTGLTRVINDYARKNNMFKETDPNLTGDDVREGLTAIISIKHPDPQFEGQTK 229

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
           TKL + +A+   ++   + F  +L +NP  A  ++E  +  S  R+  +K RE   RK A
Sbjct: 230 TKLGNSEARTVTDSLFSESFTKFLFENPNMAKTIVEKGLMASRARMAAKKARELTRRKNA 289

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADCS   A+ +EL+IVEGDSAGGSAK
Sbjct: 290 LEVSNLPGKLADCSSKDANISELYIVEGDSAGGSAK 325


>gi|220680578|dbj|BAH10778.1| DNA gyrase subunit B [Nocardia uniformis]
          Length = 400

 Score =  180 bits (455), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 121/406 (29%), Positives = 196/406 (48%), Gaps = 34/406 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L   + R    +SQ++    P      +     ++GT I F  DP IF     +
Sbjct: 1   NALSTRLQAEIDRDGYHWSQEYKDSKPGKL--VQGDTTKRKGTTIRFWADPNIFETTT-Y 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDK------------------------EIAEKYGIP 258
           +   + +  Q  A+L+  +    + ++                          A      
Sbjct: 58  NFETVARRLQEMAFLNKGLTITLTDERVSEGDVTDEVVSDTAEAPKHADETAAAAATPKV 117

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +   +++PGGL+ Y++     ++ I + I     +  G     +E A+ W       + +
Sbjct: 118 KTRTYHYPGGLEDYVKHINRTKTPIHNSIVAFTGKGTGH---ELEVAMQWNSGYSESVHT 174

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIR 375
           + NTI T EGGTHE G R ALT  + KYA+  +  +    ++  DD+      I+SV + 
Sbjct: 175 FANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDDIREGLAAIVSVKVS 234

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  ++   +  ++ R+  RK 
Sbjct: 235 EPQFEGQTKTKLGNTEVKSFVQRACNEHLGHWFEANPADAKTIVTKAVSSAQARMAARKA 294

Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LPLRG
Sbjct: 295 RELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRG 354

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           KI+NV  +  +K+  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 KIINVEKSRIDKVLKNNEVQAIITAFGTGIHDEFDLAKLRYHKIVL 400


>gi|159576544|dbj|BAF92821.1| DNA gyrase subunit B [Halobacillus sp. IS-Hb8]
          Length = 325

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 119/336 (35%), Positives = 177/336 (52%), Gaps = 15/336 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG SVVNALS +L V V R   I  Q + RG+P   L+   +  ++ GTRI
Sbjct: 1   YKVFGGLHGVGASVVNALSTKLEVFVHRDGQIHYQSYKRGVPEEDLKVVGET-DQTGTRI 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F PD +IF +   +    L    +  A+L+  +       +   +        ++Y+ G
Sbjct: 60  HFIPDDEIFQETQEYKFEILANRLRELAFLNKGLTITIEDKRTDED------PVDYYYEG 113

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+ +Y++     R  I  + F  + E+      ++E A+ + +     I SY N I T E
Sbjct: 114 GILSYVEHMNRTREAIH-DAFFIEGEQD---EISIEIAMQYNDGFASNIYSYANNIHTYE 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTHESG +  LTR I  YA      +    ++  DD+      I+S+   +P+F GQTK
Sbjct: 170 GGTHESGFKTGLTRVINDYARKNSMFKETDPNLTGDDVREGLTAIISIKHPDPQFEGQTK 229

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
           TKL + +A+   +    + F  +L +NP  A  ++E  +  S  R+  +K RE   RK A
Sbjct: 230 TKLGNSEARTVTDALFSESFSKFLFENPTMAKTIVEKGLMASRARMAAKKARELTRRKNA 289

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADCS   A+ +EL+IVEGDSAGGSAK
Sbjct: 290 LEVSNLPGKLADCSSKDANISELYIVEGDSAGGSAK 325


>gi|15551673|emb|CAC69391.1| DNA gyrase B subunit [Citrobacter freundii]
          Length = 323

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 107/334 (32%), Positives = 176/334 (52%), Gaps = 15/334 (4%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG+SVVNALS +L + + R+  +  Q +  G+P +PL    +   
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSQKLELVIRREGKVHQQTYVHGVPQAPLAVTGET-E 59

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             GT++ F P  + F +   F+   L K  +  ++L+  V       ++  E       +
Sbjct: 60  LTGTQVRFWPSHETFTNVVEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------D 112

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N
Sbjct: 113 HFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTN 169

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+
Sbjct: 170 NIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPK 229

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQRE 437
           F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+        RR +  
Sbjct: 230 FSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREM 289

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
             RK A+    LPGKLADC +     +EL++VEG
Sbjct: 290 TRRKGALDLAGLPGKLADCQERDPAHSELYLVEG 323


>gi|171702722|dbj|BAG16329.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-66]
          Length = 356

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 122/360 (33%), Positives = 192/360 (53%), Gaps = 9/360 (2%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            ++ Q++ +G  + P+++  +    RGT +TF PD  IF     +    L    +  ++L
Sbjct: 2   KVYEQEYEKGKAMYPVKQVGETTK-RGTMVTFHPDKTIFTQTIEYSYDTLAARMRELSFL 60

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +    +  +   +     E E F+   GLK +++     R  I S + + + EK   
Sbjct: 61  NKGITITLTDKRHTKDNGD-FEGEVFHSKEGLKEFVRFLDAGREPIISHVISMEHEK--- 116

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRA 354
               VE A+ +       I SY N I T EGGTH  G R+ LTR +KKYA+ +    K  
Sbjct: 117 GEIPVEVALVYNTSYSENIFSYVNNINTHEGGTHLQGFRMGLTRTLKKYADASGLLDKLK 176

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             I  DD       I+SV + EP+F GQTKTKL + +    V  A+ +  ++YL +NP +
Sbjct: 177 FEISGDDFREGLTAIISVKVSEPQFEGQTKTKLGNREVVSPVSQAVSEMLENYLEENPND 236

Query: 415 ATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  +++ VI  ++ R   +K RE+  RKT +    LPGKL+DCS+      E+++VEGDS
Sbjct: 237 AKIIVQKVILAAQARHAAKKAREMVQRKTVLGVGGLPGKLSDCSEQDPAKCEVYLVEGDS 296

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGG+AKQ R+R+ QA++PLRGKILNV  A   K+  N++I ++  ALG    ++   + L
Sbjct: 297 AGGTAKQGRDRNFQAIMPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTIGTEEDSKAL 356


>gi|17932931|emb|CAC84127.1| ParE topoisomerase IV [Stenotrophomonas maltophilia]
          Length = 173

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 84/173 (48%), Positives = 112/173 (64%), Gaps = 2/173 (1%)

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC       TELF+VEGDSAGGSAKQAR++  QA++PLRGKILN     S  +  
Sbjct: 2   PGKLADCISQDLSRTELFLVEGDSAGGSAKQARDKDFQAIMPLRGKILNTWEVSSNSVLA 61

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           ++++ +L  A+GC          LRY KVII+ DAD DG HIA+LL   F +    L++ 
Sbjct: 62  SEEVHNLAIAIGCDPGKDDI-SGLRYGKVIILADADSDGLHIATLLTALFLKHFPALVDA 120

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLG 621
            H+F+  PPLFRI  G +  YA DEE K+ +L++ ++   KG I ++RFKGLG
Sbjct: 121 GHVFVAMPPLFRIDVGKQVFYALDEEEKRSMLDKIEREKIKGAINVTRFKGLG 173


>gi|197295764|gb|ACH58592.1| gyrase subunit B [Methylobacterium variabile]
          Length = 360

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 133/369 (36%), Positives = 197/369 (53%), Gaps = 13/369 (3%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS  L + + R     + +F  G  +SPL       ++RGT +TF P    
Sbjct: 1   GVGVSVVNALSTWLRLRIWRAGQEHAMEFRHGDAVSPLAVVGPAGDRRGTEVTFLPSTDT 60

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     FD A L K  +  A+L+  V+   +  +    K      EE  + GG++ +++ 
Sbjct: 61  FT-MVEFDYATLEKRLRELAFLNSGVRIVLTDARHAEHKR-----EELVYEGGVEAFVRY 114

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
               ++ +  +    + E+ G     VE A+ W +     +  + N I   +GGTH +G 
Sbjct: 115 LDRTKTPLVDKPVVVRAERDGI---GVEVALWWNDSYHETVLPFTNNIPQRDGGTHMAGF 171

Query: 335 RVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  YAE +   +   +    DD       I+SV + +P+F+ QTK KLVS + 
Sbjct: 172 RAALTRQVTGYAESSGIAKREKVSLTGDDCREGLTAIISVKVPDPKFSSQTKDKLVSSEV 231

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
           +  VEN L +   ++L ++P EA  ++  V E +  R   RK RE   RK A+    LPG
Sbjct: 232 RPVVENVLNEGLSNWLEEHPAEAKTIVGKVAEAAAAREAARKARELTRRKGALDIASLPG 291

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +      E+ +VEGDSAGGSAKQ R+R+ QAVLPLRGKILNV  A  +K+ ++Q
Sbjct: 292 KLADCQERDPSKCEILLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERARFDKMLSSQ 351

Query: 512 QIMDLVQAL 520
           +I  L+ AL
Sbjct: 352 EIGTLITAL 360


>gi|118201814|gb|ABK79720.1| DNA gyrase subunit b [Ruegeria pomeroyi]
          Length = 357

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 119/366 (32%), Positives = 184/366 (50%), Gaps = 13/366 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALSD L + + R       +F RG  +  L    +  ++ GT + F      F +   +
Sbjct: 1   NALSDWLELRIWRHGKEHVARFERGDTVEHLRVVGECGDRTGTEVRFLASTTTFSNL-DY 59

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  A+L+  V+     ++              ++ GG++ +++    ++S 
Sbjct: 60  VFETLEKRLRELAFLNSGVRIILIDERPAERIETE-----LFYEGGVREFVKYLDRSKSP 114

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +       K E+       VE A+ W +     +  + N I   +GGTH +G R ALTR 
Sbjct: 115 VMPAPIYFKGERDDI---GVEIAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRT 171

Query: 342 IKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  YA+ +   +   I+   DD       +LSV + +P+F+ QTK KLVS + +  VEN 
Sbjct: 172 INNYAQSSGIAKREKINFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENL 231

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    +  +NP  A +++  +IE +  R   RK RE   RKTA+    L GKL DCS+
Sbjct: 232 VNEKLAEWFEENPNVAKQIVGKIIEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSE 291

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TE+F+VEGDSAGGSA+  R+R  QAVLPLRGKILNV  A  +++  +Q+I +LV 
Sbjct: 292 KDPSKTEVFLVEGDSAGGSAQTGRDRRTQAVLPLRGKILNVERARFDRMLGSQEIGNLVM 351

Query: 519 ALGCRT 524
           ALG   
Sbjct: 352 ALGTGI 357


>gi|171702708|dbj|BAG16322.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-2]
 gi|171702718|dbj|BAG16327.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-55]
 gi|171702724|dbj|BAG16330.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-73]
 gi|171702732|dbj|BAG16334.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-83]
          Length = 356

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 129/360 (35%), Positives = 197/360 (54%), Gaps = 9/360 (2%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            ++ Q++ +G  L P+++     +KRGT +TF+PD  IF     +    L    +  ++L
Sbjct: 2   KVYEQEYEKGKSLYPVKQIG-TTDKRGTIVTFKPDATIFTQTLEYSYDTLAARLRELSFL 60

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +    +  + +AE    P  E F+   GLK +++    NR  I S + + + EK   
Sbjct: 61  NKGITITLTDKRHLAEDGSQP-VETFHSKEGLKEFIKFLDGNREPIISHVISMENEK--- 116

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRA 354
               VE A+ +       I SY N I T EGGTH  G R+ LTR +KKYA+ +    K  
Sbjct: 117 GEIPVEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRMGLTRTLKKYADASGLLEKLK 176

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             I  DD       I+SV I+EP+F GQTKTKL + +    V  A+ +  ++YL +NP +
Sbjct: 177 FEIAGDDFREGLTAIISVKIQEPQFEGQTKTKLGNREVVSPVSQAVAEMLENYLEENPND 236

Query: 415 ATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  +++ VI  ++ R   +K RE+  RKT +    LPGKL+DCS+      E+++VEGDS
Sbjct: 237 AKTIVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPEKCEIYLVEGDS 296

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGG+AKQ R+R  QA+LPLRGKILNV  A   K+  N++I ++  ALG    ++   + L
Sbjct: 297 AGGTAKQGRDRFFQAILPLRGKILNVEKAMQHKVFENEEIRNIFTALGVTVGTEEDSKAL 356


>gi|15551725|emb|CAC69392.1| DNA gyrase B subunit [Enterobacter aerogenes]
          Length = 323

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 108/334 (32%), Positives = 175/334 (52%), Gaps = 15/334 (4%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG+SVVNALS +L + + R N +  Q +  G+P +PL    +   
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDNKVHKQIYEHGVPQAPLAVTGET-E 59

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             GT + F P  + F     F+   L K  +  ++L+  V       ++  E       +
Sbjct: 60  STGTMVRFWPSLETFTSVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------D 112

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F++ GG+K +++   +N++ I   IF   TEK G    +VE A+ W +     I  + N
Sbjct: 113 HFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---SVEVALQWNDGFQENIYCFTN 169

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+
Sbjct: 170 NIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPK 229

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQRE 437
           F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+        RR +  
Sbjct: 230 FSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREM 289

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
             RK A+    LPGKLADC +     +EL++VEG
Sbjct: 290 TRRKGALDLAGLPGKLADCQERDPALSELYLVEG 323


>gi|118201770|gb|ABK79698.1| DNA gyrase subunit b [Loktanella hongkongensis]
          Length = 356

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 123/366 (33%), Positives = 186/366 (50%), Gaps = 14/366 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALSD L + + R       +F RG  +  LE       + GT + F      F +   +
Sbjct: 1   NALSDWLELRIWRDGKEHVARFERGETVKHLEVVGDT-EQTGTEVRFLASTTTFSNL-DY 58

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  A+L+  V+     D+        P   E ++ GG++ +++    ++  
Sbjct: 59  VFETLEKRLRELAFLNSGVRIILEDDR-----PAQPLHTELFYEGGVREFVKYLDRSKHA 113

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +  E    + EK G     VE A+ W +     +  + N I   +GGTH +G R ALTR 
Sbjct: 114 VMPEPIWIEGEKDGI---GVEVAMWWNDTFHETVLPFTNNIPQRDGGTHMAGFRGALTRT 170

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  YA+ +    K  +S   DD       +LSV + +P+F+ QTK KLVS + +  VEN 
Sbjct: 171 INAYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENL 230

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    +  +NP  A +++  +IE +  R   RK RE   RKTA+    L GKL DCS+
Sbjct: 231 VGEKLSEWFEENPNIAKQIVGKIIEAALAREAARKARELTRRKTAMDVNFLAGKLKDCSE 290

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TE+F+VEGDSAGGSA+  R+R  QA+LPL+GKILNV  A  +++  +Q+I +LV 
Sbjct: 291 KDPTKTEVFLVEGDSAGGSAQTGRDRGTQAILPLKGKILNVERARFDRMLGSQEIGNLVM 350

Query: 519 ALGCRT 524
           ALG   
Sbjct: 351 ALGTGI 356


>gi|71833804|emb|CAI94341.1| gyrase B [Helicobacter salomonis]
          Length = 365

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 139/373 (37%), Positives = 211/373 (56%), Gaps = 17/373 (4%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS +L +T+ R+  I+ Q+F +GIP +PLE     +  RGT I F PD
Sbjct: 1   GLHGVGVSVVNALSIKLIMTIYREGQIYRQEFEKGIPTTPLEVVGTTKK-RGTTIEFFPD 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P+I      FD+A L +  Q  AYL+ ++   +               E +++  GLK +
Sbjct: 60  PQIMEVV-AFDSAVLKRRFQEMAYLNNKITLEFHDQ-------PAQVHESYHYQDGLKQF 111

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHE 331
           +      ++ + SEI     + +G     VE A+A+ E   E   S+ N I T EGGTHE
Sbjct: 112 IV--DSQKTPLISEIIAFSAQVEG---MEVEVALAYNESYEEQTFSFVNNIRTTEGGTHE 166

Query: 332 SGLRVALTRGIKKYAELTQNKRA-ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           SG ++ L++ I  Y + + + R   S++ +D+      I+S+ + +P+F GQTK+KL S 
Sbjct: 167 SGFKMGLSKAILNYIQESGSSRESASVVQEDVREGLSAIISLKLLDPQFEGQTKSKLGSS 226

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
             +  V   + +    Y  +NP  A  +++ V+  +  R   +K RE   +K ++    L
Sbjct: 227 FVRPIVAKLVYEKVAKYFEENPSIAKAIVQKVLLAARGREAAKKAREITRKKDSLSVGTL 286

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC       +EL++VEGDSAGGSAKQ R+R+ QA+LPLRGKILNV  A   KI  
Sbjct: 287 PGKLADCQSKDPRESELYLVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKAHLGKILK 346

Query: 510 NQQIMDLVQALGC 522
           +++I +++ A GC
Sbjct: 347 SEEIKNMITAFGC 359


>gi|148762399|dbj|BAF63901.1| DNA gyrase subunit B [Halobacillus sp. S19-p]
          Length = 325

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 119/336 (35%), Positives = 177/336 (52%), Gaps = 15/336 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG SVVNALS +L V V R   I  Q + RG+P   L+   +  ++ GTRI
Sbjct: 1   YKVYGGLHGVGASVVNALSTKLEVFVHRDGQIHYQSYKRGVPEEDLKVVGET-DQTGTRI 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F PD +IF +   +    L    +  A+L+  +       +   +        ++Y+ G
Sbjct: 60  HFIPDDEIFQETQEYKFEILANRLRELAFLNKGLTITIEDKRTDED------PVDYYYEG 113

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+ +Y++     R  I  + F  + E+      ++E A+ + +     I SY N I T E
Sbjct: 114 GILSYVEHMNRTREAIH-DAFFIEGEQD---EISIEIAMQYNDGFASNIYSYANNIHTYE 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTHESG +  LTR I  YA      +    ++  DD+      I+S+   +P+F GQTK
Sbjct: 170 GGTHESGFKTGLTRVINDYARKNSMFKETDPNLTGDDVREGLTAIISIKHPDPQFEGQTK 229

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
           TKL + +A+   +    + F  +L +NP  A  ++E  +  S  R+  +K RE   RK A
Sbjct: 230 TKLGNSEARTVTDALFSESFSKFLFENPTMAKTIVEKGLMASRARMAAKKARELTRRKNA 289

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADCS   A+ +EL+IVEGDSAGGSAK
Sbjct: 290 LEVSNLPGKLADCSSKDANISELYIVEGDSAGGSAK 325


>gi|118201756|gb|ABK79691.1| DNA gyrase subunit b [Antarctobacter heliothermus]
          Length = 357

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 120/366 (32%), Positives = 182/366 (49%), Gaps = 13/366 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L + V R       KF  G     L        + GT + F      F +   +
Sbjct: 1   NALSVWLELRVWRNGKEHFAKFEHGETTEHLRVVGDSHGETGTEVRFLASTGTFSNL-DY 59

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  A+L+  V+     ++        P K E ++ GG++ +++    ++  
Sbjct: 60  QFETLEKRLRELAFLNSGVRILLEDER-----PAEPMKSELHYEGGVREFVKYLDRSKQA 114

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           +  +      EK G     VE A+ W +   E    + N I   +GGTH +G R ALTR 
Sbjct: 115 VMDDPIYMDGEKDGI---GVEVAMWWNDSYHENVLPFTNNIPQRDGGTHLAGFRGALTRT 171

Query: 342 IKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I+KYA+ +   +   ++   DD       +LSV + +P+F+ QTK KLVS + +  VE  
Sbjct: 172 IQKYAQESGIAKREKVNFTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGL 231

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    +  +NP +A  ++  ++E +  R   RK RE   RKTA+       KL DCS+
Sbjct: 232 MNEKLSEWFEENPQQAKGIVGKIVEAALAREAARKARELTRRKTAMDVSFNAAKLKDCSE 291

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
             A  TELF+VEGDSAGGSA+  R+R  QA+LPLRGKILNV  A  +++  +Q+I +LV 
Sbjct: 292 KDASKTELFLVEGDSAGGSAQTGRDRRTQAILPLRGKILNVERARFDRMLGSQEIGNLVM 351

Query: 519 ALGCRT 524
           ALG   
Sbjct: 352 ALGTGI 357


>gi|32364160|gb|AAP80228.1| GyrB [Bibersteinia trehalosi]
          Length = 377

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 133/388 (34%), Positives = 207/388 (53%), Gaps = 19/388 (4%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS +L +T+ R+  I  QK+  G P +PL       +K GT + F P   I
Sbjct: 1   GVGVSVVNALSSKLQLTIRREGHIHEQKYHLGEPEAPLAVIGDT-DKTGTCVRFWPSLDI 59

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +K  F+ A L    +  ++L+  V      +++         ++ F++ GG++ ++  
Sbjct: 60  FKNKTEFEYAILKNRLRELSFLNSGVSIKLVDERD-------GTQDHFHYQGGIQAFVDY 112

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHESGL 334
            + N+       F    EK+G     VE AI W    N  +  + N I   +GGTH +G 
Sbjct: 113 LINNKKDDKQAEFLLSAEKEGV---GVEIAIQWRNALNEAVYCFTNNIPQRDGGTHLTGF 169

Query: 335 RVALTRGIKKYAEL-----TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           R AL+  I KY +      T++++ I +  DD     V ++SV + +P+F+ QTK KLVS
Sbjct: 170 RGALSNSITKYMDSDVAKLTKDEKKIKVKGDDAREGLVAVVSVKVPDPKFSSQTKDKLVS 229

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449
            + +  VE  + +    YL ++P +A  +++  +  +  R    K RE   +  +  L  
Sbjct: 230 SEVRTVVETTMNEALQEYLNEHPEDAKAIVKKRLLAARGRAAAAKARETIARKGVFSLGG 289

Query: 450 -PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
            PGKLADC ++     ELF+VEGDSAGGSAKQ R+ + QAVLPL+GKILNV  A  +K+ 
Sbjct: 290 LPGKLADCHESDPSQCELFLVEGDSAGGSAKQGRDSNYQAVLPLKGKILNVEKARFDKML 349

Query: 509 NNQQIMDLVQALGCRT-RSQYREEDLRY 535
           ++Q+I  L+   G    R ++  E LRY
Sbjct: 350 SSQEITALITTFGAGIGRDEFNPEKLRY 377


>gi|188037425|gb|ACD46328.1| DNA gyrase subunit B [Providencia burhodogranariea]
 gi|188037469|gb|ACD46348.1| DNA gyrase subunit B [Providencia burhodogranariea]
          Length = 270

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 88/282 (31%), Positives = 145/282 (51%), Gaps = 15/282 (5%)

Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179
            H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L + + R   +
Sbjct: 1   IHDE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKV 59

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
             Q +S G+P   L    +  ++ GT + F P    F     F+   L K  +  ++L+ 
Sbjct: 60  HEQIYSHGVPQGSLTVVGET-DQTGTYVRFWPSFDTFKTVTEFEYDILAKRLRELSFLNS 118

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            V       ++  E       + F++ GG+K +++    N++ I   +F   T K G   
Sbjct: 119 GVSIRLIDKRDGKE-------DHFHYEGGIKAFVEYLSRNKTPIHPSVFYFSTVKDGI-- 169

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
             VE ++ W +     +  + N I   +GG H +G R A+TR +  Y +      K  +S
Sbjct: 170 -GVEISMQWNDGFQENVYCFTNNIPQRDGGAHLAGFRAAMTRTLNNYMDKEGYHKKSKVS 228

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
              DD     + ++SV + +P+F+ QTK KLVS + +  VE 
Sbjct: 229 ATGDDAREGLIAVISVKVPDPKFSSQTKEKLVSSEVKTAVET 270


>gi|220680532|dbj|BAH10755.1| DNA gyrase subunit B [Nocardia ignorata]
          Length = 399

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 118/405 (29%), Positives = 195/405 (48%), Gaps = 34/405 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS +L   +      ++Q +    P      + +  ++ GT I F  DP+IF     +
Sbjct: 1   NALSSKLEAEIDNDGYHWTQVYKDSKPGKL--VQGEPTDRTGTTIRFWADPEIFETTT-Y 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK------------------------YGIP 258
           +   + +  Q  A+L+  +    + ++    +                            
Sbjct: 58  NFETVARRLQEMAFLNKGLTITLTDERVSDSEVTDEVVSETAEAPKHADEVAAQAVEHKV 117

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +   +++PGGL  +++     +S I + +     +  G     +E A+ W       + +
Sbjct: 118 KTRTYHYPGGLVDFVRHINRTKSAIHNSVVGFTGKGTGH---ELEVAMQWNSGYSESVHT 174

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIR 375
           + NTI T EGGTHE G R ALT  + KYA+  +  +    ++  DD+      I+SV + 
Sbjct: 175 FANTINTHEGGTHEEGFRAALTTVVNKYAKEKKLLKEKDGNLTGDDIREGLAAIVSVKVG 234

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  +++  +  ++ R+  RK 
Sbjct: 235 EPQFEGQTKTKLGNTEVKSFVQRACNEHLTHWFEANPADAKTIVQKAVSSAQARMAARKA 294

Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE V RK+A     LPGKLADC        E++IVEGDSAGGSAK  R+   QA+LPLRG
Sbjct: 295 RELVRRKSATDLGGLPGKLADCRSKDPGKCEIYIVEGDSAGGSAKSGRDSMYQAILPLRG 354

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539
           KI+NV  A  +++  N ++  ++ A G     ++    LRY K+I
Sbjct: 355 KIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYNKII 399


>gi|171702720|dbj|BAG16328.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-56]
          Length = 356

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 129/360 (35%), Positives = 197/360 (54%), Gaps = 9/360 (2%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            ++ Q++ +G  L P+++     +KRGT +TF+PD  IF     +    L    +  ++L
Sbjct: 2   KVYEQEYEKGKSLYPVKQIG-TTDKRGTVVTFKPDATIFTQTLEYSYDTLAARLRELSFL 60

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +    +  + +AE    P  E F+   GLK +++    NR  I S + + + EK   
Sbjct: 61  NKGITITLTDKRHLAEDGSQP-VETFHSKEGLKEFIKFLDGNREPIISHVISMENEK--- 116

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRA 354
               VE A+ +       I SY N I T EGGTH  G R+ LTR +KKYA+ +    K  
Sbjct: 117 GEIPVEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRMGLTRTLKKYADASGLLEKLK 176

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             I  DD       I+SV I+EP+F GQTKTKL + +    V  A+ +  ++YL +NP +
Sbjct: 177 FEIAGDDFREGLTAIISVKIQEPQFEGQTKTKLGNREVVSPVSQAVAEMLENYLEENPND 236

Query: 415 ATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  +++ VI  ++ R   +K RE+  RKT +    LPGKL+DCS+      E+++VEGDS
Sbjct: 237 AKTIVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPEKCEIYLVEGDS 296

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGG+AKQ R+R  QA+LPLRGKILNV  A   K+  N++I ++  ALG    ++   + L
Sbjct: 297 AGGTAKQGRDRFFQAILPLRGKILNVEKAMQHKVFENEEIRNIFTALGVTVGTEEDSKAL 356


>gi|148762391|dbj|BAF63897.1| DNA gyrase subunit B [Halobacillus sp. S3-2]
          Length = 325

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 120/336 (35%), Positives = 177/336 (52%), Gaps = 15/336 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG SVVNALS +L V V R   I  Q + RG+P   L+   +  +K GTRI
Sbjct: 1   YKVFGGLHGVGASVVNALSTKLEVFVHRDGEIHYQSYKRGVPEEDLKVIGET-DKTGTRI 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F PD +IF +   +    L    +  A+L+  +       +   +        ++Y+ G
Sbjct: 60  HFIPDDEIFQETQEYKFEILANRLRELAFLNKGLTITIEDKRTDED------PVDYYYEG 113

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+ +Y++     R  I  + F  + E+      ++E A+ + +     I SY N I T E
Sbjct: 114 GILSYVEHMNRTREAIH-DAFFIEGEQD---EISIEIAMQYNDGFASNIYSYANNIHTYE 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTHESG +  LTR I  YA      +    ++  DD+      I+S+   +P+F GQTK
Sbjct: 170 GGTHESGFKTGLTRVINDYARKNNMFKETDPNLTGDDVREGLTAIISIKHPDPQFEGQTK 229

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
           TKL + +A+   +    + F  +L +NP  A  ++E  +  S  R+  +K RE   RK A
Sbjct: 230 TKLGNSEARTVTDALFSESFSKFLFENPTMAKTIVEKGLMASRARMAAKKARELTRRKNA 289

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADCS   A+ +EL+IVEGDSAGGSAK
Sbjct: 290 LEVSNLPGKLADCSSKDANISELYIVEGDSAGGSAK 325


>gi|71833802|emb|CAI94340.1| gyrase B [Helicobacter salomonis]
          Length = 365

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 139/373 (37%), Positives = 211/373 (56%), Gaps = 17/373 (4%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS +L +T+ R+  I+ Q+F +GIP +PLE     +  RGT I F PD
Sbjct: 1   GLHGVGVSVVNALSIKLIMTIYREGQIYRQEFEKGIPTTPLEVVGTTKK-RGTTIEFFPD 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P+I      FD+A L +  Q  AYL+ ++   +               E +++  GLK +
Sbjct: 60  PQIMEVI-AFDSAVLKRRFQEMAYLNNKITLEFHDQ-------PAQVHESYHYQDGLKQF 111

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHE 331
           +      ++ + SEI     + +G     VE A+A+ E   E   S+ N I T EGGTHE
Sbjct: 112 I--IDSQKTPLISEIIAFNAQVEG---MEVEVALAYNESYEEQTFSFVNNIRTTEGGTHE 166

Query: 332 SGLRVALTRGIKKYAELTQNKRA-ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           SG ++ L++ I  Y + + + R   S++ +D+      I+S+ + +P+F GQTK+KL S 
Sbjct: 167 SGFKMGLSKAILNYIQESGSSRESASVVQEDVREGLSAIISLKLLDPQFEGQTKSKLGSS 226

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
             +  V   + +    Y  +NP  A  +++ V+  +  R   +K RE   +K ++    L
Sbjct: 227 FVRPIVAKLVYEKVAKYFEENPSIAKAIVQKVLLAARGREAAKKAREITRKKDSLSVGTL 286

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC       +EL++VEGDSAGGSAKQ R+R+ QA+LPLRGKILNV  A   KI  
Sbjct: 287 PGKLADCQSKDPRESELYLVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKAHLGKILK 346

Query: 510 NQQIMDLVQALGC 522
           +++I +++ A GC
Sbjct: 347 SEEIKNMITAFGC 359


>gi|118201824|gb|ABK79725.1| DNA gyrase subunit b [Sulfitobacter mediterraneus]
          Length = 356

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 120/366 (32%), Positives = 186/366 (50%), Gaps = 14/366 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALSD L + + R+      +F  G     LE      ++ GT + F      F +   +
Sbjct: 1   NALSDWLELRIWREGKEHIARFEGGFTTKHLEVLGDT-DRTGTEVRFMASTDTFSNL-EY 58

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  A+L+  V+   + ++        P + E ++ GG+K +++    +++ 
Sbjct: 59  SFETLEKRLRELAFLNSGVRIILTDER-----PAEPLRSELFYEGGVKEFVKYLDRHKTS 113

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           +  E      EK       VE A+ W +   E    + N I   +GGTH +G R ALTR 
Sbjct: 114 VMPEPIFIVGEKDDI---GVEVAMWWNDSYHENVLPFTNNIPQRDGGTHMAGFRGALTRT 170

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  YA+ +    K  I+   DD       +LSV + +P+F+ QTK KLVS + +  VE  
Sbjct: 171 INSYAQSSGIAKKEKINFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGL 230

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    +  +NP EA  ++  ++E +  R   RK R+   RKTA+    L GKL DCS+
Sbjct: 231 VNEKLSEWFEENPNEARIVVSKIVEAAHAREAARKARDLTRRKTAMDVNFLAGKLKDCSE 290

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TE+F+VEGDSAGGSA+  R+R  QA+LPL+GKILNV  A  +++  +Q+I +LV 
Sbjct: 291 KDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVM 350

Query: 519 ALGCRT 524
           ALG   
Sbjct: 351 ALGTGI 356


>gi|118201766|gb|ABK79696.1| DNA gyrase subunit b [Leisingera methylohalidivorans DSM 14336]
          Length = 357

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 118/366 (32%), Positives = 185/366 (50%), Gaps = 13/366 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALSD L + + R       +F RG     LE      ++ GT + F      F +   +
Sbjct: 1   NALSDWLELRIWRDGKEHIARFERGETAKHLEVVGDCGDRTGTEVRFLASTDTFSNL-DY 59

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  A+L+  V+     ++          + E ++ GG+K +++    +++ 
Sbjct: 60  IFETLEKRLRELAFLNSGVRIILIDER-----PAERLEIELFYEGGVKEFVKYLDRHKTP 114

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +         EK       VE A+ W +     +  + N I   +GGTH +G R ALTR 
Sbjct: 115 VMETPVYIIGEKDEI---VVEIAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRT 171

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  YA+ +    K  +S   DD       +LSV + +P+F+ QTK KLVS + +  VE+ 
Sbjct: 172 INNYAQTSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESL 231

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    +  +NP +A +++  ++E +  R   RK RE   RKTA+    L GKL DCS+
Sbjct: 232 VGEKLSEWFEENPGQAKQIVGKIVEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSE 291

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TE+F+VEGDSAGGSA+  R+R  QA+LPL+GKILNV  A  +++  +Q+I +LV 
Sbjct: 292 KDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVM 351

Query: 519 ALGCRT 524
           ALG   
Sbjct: 352 ALGTGI 357


>gi|220680520|dbj|BAH10749.1| DNA gyrase subunit B [Nocardia cyriacigeorgica]
          Length = 399

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 119/405 (29%), Positives = 195/405 (48%), Gaps = 33/405 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L   V      ++Q++    P      + +   + GT I F PDP IF     F
Sbjct: 1   NALSTRLEAEVDHAGYHWTQEYKDATPGKL--IQGEPTTRTGTTIRFWPDPNIFETT-SF 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDK-----------------------EIAEKYGIPE 259
           +   + +  Q  A+L+  +    + ++                       E  +     +
Sbjct: 58  NFETVARRLQEMAFLNKGLTITLTDERVSDTEVTDEVVSETAEAPKHADAEAQQTEHKVK 117

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              +++PGGL+ +++     +  I + +     +  G     +E A+ W       + ++
Sbjct: 118 SRTYHYPGGLEDFVRHINRTKQPIHNSVVAFTGKGTGH---ELEVAMQWNSGYSESVHTF 174

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIRE 376
            NTI T EGGTHE G R ALT  + +YA+  +  +    ++  DD+      I+SV + E
Sbjct: 175 ANTINTHEGGTHEEGFRAALTTVVNRYAKEKKLLKDKDGNLTGDDIREGLAAIVSVKVGE 234

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F GQTKTKL + + +  V+    +   H+   NP +A  ++   +  ++ R+  RK R
Sbjct: 235 PQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVNKAVSSAQARVAARKAR 294

Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LPLRGK
Sbjct: 295 ELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGK 354

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           I+NV  A  +K+  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 IINVEKARIDKVLKNNEVQAIITAFGTGIHDEFDISKLRYHKIVL 399


>gi|220680189|dbj|BAH10713.1| DNA gyrase subunit B [Nocardia aobensis]
 gi|220680538|dbj|BAH10758.1| DNA gyrase subunit B [Nocardia kruczakiae]
          Length = 399

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 117/405 (28%), Positives = 202/405 (49%), Gaps = 33/405 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  +   + R    +SQ++    P   ++   +  ++ GT   F  DP +F     +
Sbjct: 1   NALSSRMVTEIDRDGFHWSQEYKDAKPGKLVK--GEPTDRTGTTQRFWADPDVFETTT-Y 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSC---------DKEIAEKYGIPEKE------------ 261
           +   + +  Q  A+L+  +    +          D+ ++E    P+ +            
Sbjct: 58  NFETISRRLQEMAFLNKGLTITLTDQRVSEAEVTDEVVSETAEAPKHDEGSAAPPEPKVK 117

Query: 262 --EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              +++PGGL+ +++     +  I + + +  ++  G     +E A+ W       + ++
Sbjct: 118 TRTYHYPGGLEDFVKHINRTKQAIHNTVVSFTSKGTGH---ELEVAMQWNSGYSESVHTF 174

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIRE 376
            NTI T EGGTHE G R ALT  + KYA+  +  +    ++  DD+      I+SV + E
Sbjct: 175 ANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDDIREGLAAIVSVKVSE 234

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F GQTKTKL + + +  V+    +   H+   NP +A  +++  +  ++ R+  RK R
Sbjct: 235 PQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQKAVSSAQARVAARKAR 294

Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LPLRGK
Sbjct: 295 ELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGK 354

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           I+NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 IINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDISKLRYHKIVL 399


>gi|148762459|dbj|BAF63931.1| DNA gyrase subunit B [Virgibacillus sp. Sa12-3XX]
          Length = 324

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 122/336 (36%), Positives = 178/336 (52%), Gaps = 16/336 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG SVVNALS +L V V   N I    F +G+P   +E   +  +  GT  
Sbjct: 1   YKVSGGLHGVGASVVNALSTKLEVHVHLDNKIHYLGFKKGVPQGEIEVVGET-DVTGTTT 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F PDP+IF     +D   L +  +  A+L+  +       +   E         +++ G
Sbjct: 60  HFVPDPEIFDT-IEYDYDTLTQRLRELAFLNKGITITVEDKRTDEE------PVSYFYEG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K+Y++     + ++    F  + E +G    +VE AI + E     + S+ N I T E
Sbjct: 113 GIKSYVEFINRTKEVLHEP-FYAEGEDQGI---SVEVAIQYNEGFASSLYSFANNIHTYE 168

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GG+HESG R  LTR I  YA      R    ++  DD+      I+SV   +P+F GQTK
Sbjct: 169 GGSHESGFRTGLTRVINDYARKNNLYRENDPNLSGDDVREGMTAIVSVKHPDPQFEGQTK 228

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
           TKL + +A+   ++   + F  +L +NP  A  +++  +  S  RL  +K RE   RK+A
Sbjct: 229 TKLGNSEARTITDSVFSEMFSKFLYENPSVAKIIVDKGLMASRARLAAKKARELTRRKSA 288

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADCS   A  +EL+IVEGDSAGGSAK
Sbjct: 289 LEISNLPGKLADCSSKDAKISELYIVEGDSAGGSAK 324


>gi|220680558|dbj|BAH10768.1| DNA gyrase subunit B [Nocardia pseudovaccinii]
          Length = 401

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 116/407 (28%), Positives = 192/407 (47%), Gaps = 35/407 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L   V      ++Q++    P   ++       + GT I F  DP IF     +
Sbjct: 1   NALSTRLEADVDVDGYHWTQEYKDSKPGKLMQ--GDPTKRTGTTIRFWADPNIFETTT-Y 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-------------------------YGI 257
           +   + +  Q  A+L+  +    + ++                                 
Sbjct: 58  NFETVARRLQEMAFLNKGLTITLTDERVAETDVIDEVVSDTAEAPKHADPDAPAAPVEHK 117

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
            +   +++PGGL+ +++     +  I + +     +  G     +E A+ W       + 
Sbjct: 118 VKTRTYHYPGGLEDFVRHINRTKQAIHNSVVAFTGKGTGH---ELEVAMQWNSGYSESVH 174

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFI 374
           ++ NTI T EGGTHE G R ALT  + KYA+  +  +    ++  DD+      I+SV +
Sbjct: 175 TFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDDIREGLAAIVSVKV 234

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP+F GQTKTKL + + +  V+    +   H+   NP +A  ++   +  ++ R+  RK
Sbjct: 235 SEPQFEGQTKTKLGNTEVKSFVQRTCNEHLSHWFEANPADAKTIVNKAVSSAQARVAARK 294

Query: 435 QRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            RE V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LPLR
Sbjct: 295 ARELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLR 354

Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           GKI+NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 GKIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYHKIVL 401


>gi|171702696|dbj|BAG16316.1| DNA gyrase subunit B [Flavobacterium columnare]
          Length = 356

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 126/360 (35%), Positives = 190/360 (52%), Gaps = 9/360 (2%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            I+ Q++ RG    P+++     +KRGT + F+PD  IF     +    L    +  A+L
Sbjct: 2   KIYEQEYERGKAQYPVKQIG-TTDKRGTTVWFKPDGTIFQQTLEYSYDTLAARMRELAFL 60

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +    +  +   +K G    E F+   GLK +++    NR      I    + +   
Sbjct: 61  NKGITITLTDKRGQ-DKEGKYLGETFHSKEGLKEFVKFLDGNR---VPIIGHVISMENDK 116

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRA 354
               VE A+ + +     I SY N I T EGGTH  G R+ LTR +KKYA+ +    K  
Sbjct: 117 GEIPVEVALIYNDSYSENIFSYVNNINTHEGGTHLQGFRMGLTRTLKKYADASGLLDKLK 176

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             I  DD       I+SV + EP+F GQTKTKL + +    V  A+ +  ++YL +NP +
Sbjct: 177 FEISGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVVSPVSQAVAEMLENYLEENPND 236

Query: 415 ATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  +++ VI  ++ R   +K RE+  RKT +    LPGKL+DCS+      E+F+VEGDS
Sbjct: 237 AKIIVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPTKCEIFLVEGDS 296

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGG+AKQ R+R+ QA+LPLRGKILNV  A   K+  N++I ++  ALG    +    + L
Sbjct: 297 AGGTAKQGRDRNFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTVGTADDSKAL 356


>gi|197700099|gb|ACH72051.1| DNA gyrase subunit B [Ruegeria pelagia]
          Length = 357

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 117/366 (31%), Positives = 185/366 (50%), Gaps = 13/366 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALSD L + + R       +F RG  +  L       ++ GT + F      F +   +
Sbjct: 1   NALSDWLELRIWRNGKEHVARFERGDTVKHLAVVGDCGDRTGTEVRFLASTDTFSNL-EY 59

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  A+L+  V+   + ++          + E ++ GG+  +++    +++ 
Sbjct: 60  SFETLEKRLRELAFLNSGVRIVVTDER-----PAERLESELFYEGGVNEFVKYLDRSKTP 114

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +       K EK       +E A+ W +     +  + N I   +GGTH +G R ALTR 
Sbjct: 115 VMDAPIYIKGEKDDI---GIEIAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRT 171

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  YA+ +    K  +S   DD       +LSV + +P+F+ QTK KLVS + +  VE+ 
Sbjct: 172 INNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESL 231

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    +  +NP  A +++  +IE +  R   RK RE   RKTA+    L GKL DCS+
Sbjct: 232 MGEKLAEWFEENPHVAKQVVGKIIEAALAREAARKARELTRRKTAMDVNFLAGKLKDCSE 291

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TE+F+VEGDSAGGSA+  R+R  QA+LPL+GKILNV  A  +++  +Q+I +LV 
Sbjct: 292 KDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVM 351

Query: 519 ALGCRT 524
           ALG   
Sbjct: 352 ALGTGI 357


>gi|118201760|gb|ABK79693.1| DNA gyrase subunit b [Jannaschia rubra]
          Length = 356

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 120/366 (32%), Positives = 191/366 (52%), Gaps = 14/366 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALSD L + + R       +F  G  +  L+      ++ GT + F      F ++  +
Sbjct: 1   NALSDWLELRIWRDGKEHVARFEHGDTVEHLKVVGDT-DRTGTEVRFMASLNTFSNR-DY 58

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L    +  A+L+  V+     ++          + E ++ GG++ +++    +++ 
Sbjct: 59  SFKTLENRLRELAFLNSGVRIVLEDER-----PVEALRTELFYEGGVREFVRYIDRSKTA 113

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           +  +    + E+ G     VE A+ W +   E+   + N I   +GGTH +GLR ALTR 
Sbjct: 114 VMPDPIYMEGERDGI---GVEVAMWWNDSYNEMVLPFTNNIPQRDGGTHLAGLRGALTRT 170

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  YA+ +    K  +S   DD       +LSV + +P+F+ QTK KLVS + +  VEN 
Sbjct: 171 INLYAQSSGIARKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENL 230

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    +  +NP +A +++  +IE +  R   RK RE   RKTA+    LPGKLADC +
Sbjct: 231 VNEKLAEWFEENPQQARQIVGKIIEAAFAREAARKARELTRRKTAMDVASLPGKLADCQE 290

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 ELF+VEGDSAGGSAKQ R+R NQA+LPL+GKILNV  A  +++  +Q+I  L+ 
Sbjct: 291 KDPSKAELFLVEGDSAGGSAKQGRSRQNQAILPLKGKILNVERARFDRMLASQEIGTLIT 350

Query: 519 ALGCRT 524
           A+G   
Sbjct: 351 AMGTGI 356


>gi|297039743|pdb|3L4J|A Chain A, Topoisomerase Ii-Dna Cleavage Complex, Apo
 gi|297039748|pdb|3L4K|A Chain A, Topoisomerase Ii-Dna Cleavage Complex, Metal-Bound
          Length = 722

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 59/224 (26%), Positives = 107/224 (47%), Gaps = 15/224 (6%)

Query: 462 HGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
           +   L + EGDSA   A        R      PLRGK+LNV  A +++I  N +I  + +
Sbjct: 21  YKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKK 80

Query: 519 ALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE-QKHLFLIS 576
            +G + R +Y +   LRY  ++IMTD D DG+HI  L++ F       L++ Q  L    
Sbjct: 81  IMGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFI 140

Query: 577 PPLFRI---TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
            P+ ++        ++  ++    +K  EE  +  K   +   +KGLG  LA +++E   
Sbjct: 141 TPIIKVSITKPTKNTIAFYNMPDYEKWREE--ESHKFTWKQKYYKGLGTSLAQEVREYFS 198

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           + ++   L++  +   N       + +K    KAD+R +++++ 
Sbjct: 199 NLDRH--LKIFHSLQGNDKDYIDLAFSK---KKADDRKEWLRQY 237


>gi|118201806|gb|ABK79716.1| DNA gyrase subunit b [Ruegeria atlantica]
          Length = 357

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 117/366 (31%), Positives = 183/366 (50%), Gaps = 13/366 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+ L + V R       +F  G  +  L+   +  ++ GT + F      F +   +
Sbjct: 1   NALSNWLELRVWRNGKEHVARFEGGETVEHLKVVAECGDRTGTEVRFLASLDTFSNL-EY 59

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  A+L+  V+     ++              ++ GG+K +++    +++ 
Sbjct: 60  SFETLEKRLRELAFLNSGVRIILIDERPAERLETE-----LFYEGGVKEFVKYLDRSKTS 114

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
              E    K E+       VE A+ W +     +  + N I   +GGTH +G R ALTR 
Sbjct: 115 AMPEPIYIKGERDDI---GVEIAMWWNDSYHETVLPFTNNIPQRDGGTHIAGFRGALTRT 171

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  YA+ +    K  +S   DD       +LSV + +P+F+ QTK KLVS + +  VE  
Sbjct: 172 INNYAQTSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGL 231

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    +  +NP  A  ++  +IE +  R   RK RE   RKTA+    L GKL DCS+
Sbjct: 232 MNEKLAEWFEENPNVAKIIVGKIIEAALAREAARKARELTRRKTAMDVNFLAGKLKDCSE 291

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TE+F+VEGDSAGGSA+  R+R  QA+LPL+GKILNV  A  +++ ++Q+I +LV 
Sbjct: 292 KDPTKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLSSQEIGNLVM 351

Query: 519 ALGCRT 524
           ALG   
Sbjct: 352 ALGTGI 357


>gi|171702734|dbj|BAG16335.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-85]
 gi|171702736|dbj|BAG16336.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-88]
 gi|171702738|dbj|BAG16337.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-89]
 gi|171702740|dbj|BAG16338.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-90]
 gi|171702742|dbj|BAG16339.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-92]
 gi|171702750|dbj|BAG16343.1| DNA gyrase subunit B [Flavobacterium sp. GMY-1]
 gi|171702752|dbj|BAG16344.1| DNA gyrase subunit B [Flavobacterium sp. GMY-2]
 gi|171702754|dbj|BAG16345.1| DNA gyrase subunit B [Flavobacterium sp. GMY-3]
          Length = 356

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 129/360 (35%), Positives = 195/360 (54%), Gaps = 9/360 (2%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            I+ Q++ +G  L P+++  +    RGT +TF PDP IF     +    L    +  ++L
Sbjct: 2   KIYEQEYEKGKALYPVKQIGETTK-RGTIVTFYPDPTIFTQTIEYSYDTLSARMRELSFL 60

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +   ++  +E  +K G    E F+   GLK Y++    NR  I + + +   EK   
Sbjct: 61  NKGITITFTDKRE-KDKDGNFVSEVFHSDEGLKEYIRYLDGNREPIIAHVISMDHEK--- 116

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRA 354
               VE A+ +       I SY N I T EGGTH  G R  LTR +KKYA+ +    K  
Sbjct: 117 GEIPVEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGMLDKLK 176

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             I  DD       I+SV + EP+F GQTKTKL + +    V  A+ +  ++YL +NP +
Sbjct: 177 FDISGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVVSPVSQAVSEMIENYLEENPND 236

Query: 415 ATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  +++ VI  ++ R   +K RE+  RKT +    LPGKL+DCS+      E+++VEGDS
Sbjct: 237 ARVIVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGDS 296

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGG+AKQ R+R+ QA+LPLRGKILNV  A   K+  N++I ++  ALG    ++   + L
Sbjct: 297 AGGTAKQGRDRAFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTIGTEEDSKAL 356


>gi|118201826|gb|ABK79726.1| DNA gyrase subunit b [Sulfitobacter pontiacus]
          Length = 356

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 120/366 (32%), Positives = 185/366 (50%), Gaps = 14/366 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALSD L + + R+      +F  G     LE       + GT + F    + F +   +
Sbjct: 1   NALSDWLELRIWREGKEHVARFEGGFTTKHLEVVGPT-ERTGTEVRFMASTETFSNL-DY 58

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  A+L+  V+   + ++        P + E ++ GG+K +++    +++ 
Sbjct: 59  SFETLEKRLRELAFLNSGVRIILTDER-----PAEPLRTELFYEGGVKEFVKYLDRSKTS 113

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           +  E      EK       VE A+ W +   E    + N I   +GGTH +G R ALTR 
Sbjct: 114 VMPEPIFITGEKDDI---GVEVAMWWNDSYHENVLPFTNNIPQRDGGTHTAGFRGALTRT 170

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  YA+ +    K  +S   DD       +LSV + +P+F+ QTK KLVS + +  VE  
Sbjct: 171 INNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGL 230

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    +  +NP  A  ++  +IE +  R   RK R+   RKTA+    L GKL DCS+
Sbjct: 231 VNEKLAEWFEENPQIAKIVVGKIIEAAHAREAARKARDLTRRKTAMDVNFLAGKLKDCSE 290

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TE+F+VEGDSAGGSA+  R+R  QA+LPL+GKILNV  A  +++  +Q+I +LV 
Sbjct: 291 KDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVM 350

Query: 519 ALGCRT 524
           ALG   
Sbjct: 351 ALGTGI 356


>gi|71834043|dbj|BAE16966.1| DNA gyrase B subunit [Shewanella baltica]
          Length = 362

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 127/370 (34%), Positives = 199/370 (53%), Gaps = 15/370 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS +L +T+ R   ++ Q ++ G+P +P+++        GT I F P    F D
Sbjct: 1   VSVVNALSKKLQMTIRRAGKVYEQFYTHGVPDAPIKEIGDATK-TGTEIRFWPSEDTFSD 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      +++        + E F + GG+  ++     
Sbjct: 60  V-EFHFEILAKRVRELSFLNSGVGIRLVDERDN-------KNEFFKYEGGISAFVDYLNR 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++ ++F    E++     TVE A+ W +     I  + N I   +GGTH  G R A
Sbjct: 112 NKTPVNKDVFHFMQERED--GITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLVGFRSA 169

Query: 338 LTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K   S   DD       ++SV + +P+F+ QTK KLVS + +  
Sbjct: 170 LTRNLNSYMENEGYNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTA 229

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454
           VE  + +  + YL++NP +A  ++  +++ +  R   RK R    RK A+    LPGKLA
Sbjct: 230 VEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLA 289

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++ 
Sbjct: 290 DCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 349

Query: 515 DLVQALGCRT 524
            L+ ALGC  
Sbjct: 350 TLITALGCGI 359


>gi|171702706|dbj|BAG16321.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-1]
          Length = 356

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 129/360 (35%), Positives = 198/360 (55%), Gaps = 9/360 (2%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            ++ Q++ +G  L P+++     +KRGT +TF+PD  IF     +    L    +  ++L
Sbjct: 2   KVYEQEYEKGKSLYPVKQIG-TTDKRGTVVTFKPDATIFTQTLEYSYDTLAARLRELSFL 60

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +    +  + +AE    P  E F+   GLK +++    NR  I S + + + EK   
Sbjct: 61  NKGITITLTDKRHLAEDGSQP-VETFHSKEGLKEFIKFLDGNREPIISHVISMENEK--- 116

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRA 354
               VE A+ +       I SY N I T EGGTH  G R+ LTR +KKYA+ +    K  
Sbjct: 117 GEIPVEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRMGLTRTLKKYADASGLLEKLK 176

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             I  DD+      I+SV I+EP+F GQTKTKL + +    V  A+ +  ++YL +NP +
Sbjct: 177 FEIAGDDIREGLTAIISVKIQEPQFEGQTKTKLGNREVVSPVSQAVAEMLENYLEENPND 236

Query: 415 ATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  +++ VI  ++ R   +K RE+  RKT +    LPGKL+DCS+      E+++VEGDS
Sbjct: 237 AKTIVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPEKCEIYLVEGDS 296

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGG+AKQ R+R  QA+LPLRGKILNV  A   K+  N++I ++  ALG    ++   + L
Sbjct: 297 AGGTAKQGRDRFFQAILPLRGKILNVEKAMQHKVFENEEIRNIFTALGVTVGTEEDSKAL 356


>gi|15551711|emb|CAC69408.1| DNA gyrase B subunit [Providencia alcalifaciens]
          Length = 323

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 105/334 (31%), Positives = 173/334 (51%), Gaps = 15/334 (4%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG+SVVNALS++L + + R   +  Q +  G P  PL    +  +
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQIYKHGEPQGPLTVVGET-D 59

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           + GTR+ F P    F     F+   L K  +  ++L+  V       ++  E       +
Sbjct: 60  QTGTRVRFWPSMDTFKGVTEFEYDILAKRLRELSFLNSGVSIRLIDKRDGKE-------D 112

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F++ GG+K +++    N++ I   +F   TEK G     VE ++ W +     +  + N
Sbjct: 113 HFHYEGGIKAFVEYLSRNKTPIHPSVFYFSTEKDGI---GVEVSMQWNDGFQENVYCFTN 169

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I   +GGTH +G R A+TR +  Y E      K  +S   DD     + ++SV + +P+
Sbjct: 170 NIPQRDGGTHLAGFRAAMTRTLNNYMEKEGYSKKTKVSATGDDAREGLIAVISVKVPDPK 229

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQRE 437
           F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+        R+ +  
Sbjct: 230 FSSQTKEKLVSSEVKTAVETLMNEKLVEYLLENPNDAKIVVGKIIDAARAREAARKAREM 289

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
             RK A+    LPGKLADC +     +EL++VEG
Sbjct: 290 TRRKGALDLAGLPGKLADCQERDPALSELYLVEG 323


>gi|93277210|gb|ABF06423.1| gyrase B [Streptomyces sp. C33]
          Length = 361

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 118/363 (32%), Positives = 187/363 (51%), Gaps = 7/363 (1%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS +L V V      ++Q +  G P +PL+K E      GT +TF  DP IF     + 
Sbjct: 1   ALSTKLVVEVKTDGHRWTQDYKLGAPTAPLQKNEATEE-TGTSVTFWADPDIFETT-DYS 58

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKE-IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
              L +  Q  A+L+  +    + ++E   ++ G      +++ GG+  +++     +  
Sbjct: 59  FETLARRFQEMAFLNKGLTIALTDEREGHVDEEGKQTSVRYHYEGGISDFVRYLNSRKGE 118

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRG 341
           +          +      +VE A+ W  +  E + S+ NTI T EGGTHE G R ALT  
Sbjct: 119 LVHPTVIDFEAEDTERLLSVEVAMQWNNQFSEGVYSFANTIHTHEGGTHEEGFRAALTGL 178

Query: 342 IKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I +YA   +    +  ++  +D+      I+SV + EP+F GQTKTKL + +A+  V+  
Sbjct: 179 INRYARERKLLRDKDDNLTGEDIREGLTAIISVKLGEPQFEGQTKTKLGNTEAKTFVQKI 238

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQ 458
           + + F  +L +NP EA  ++   I+ +  R+  RK R++ R+  +     LPGKL+DC  
Sbjct: 239 VHEYFADWLDRNPNEAADIIRKGIQAATARVAARKARDLTRRKGLLETASLPGKLSDCQS 298

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
           N     E+ IVEGDSA  SAK  R+   QA+LP+RGKILNV  A  +K+  N ++  L+ 
Sbjct: 299 NDPAKCEIXIVEGDSAHASAKXGRDPEYQAILPIRGKILNVEKARIDKVLQNAEVQALIS 358

Query: 519 ALG 521
           A G
Sbjct: 359 AFG 361


>gi|307343852|emb|CBJ19531.1| gyrase B subunit [Micromonospora sp. SG16]
          Length = 364

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 108/369 (29%), Positives = 184/369 (49%), Gaps = 9/369 (2%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V + +   ++ Q+++   P    +   +  N+ G+ + F PDP +F     FD   + + 
Sbjct: 2   VEIHKSGFVWRQQYTNSKPTPLEK--GETTNRTGSAVAFWPDPAVFETV-DFDFQTIYRR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            Q  A+L+  +      ++    + G P +  F + GG+  +++    +++ I   +   
Sbjct: 59  LQEMAFLNRGLTIHLLDERVPEGEEGKPREVTFLYKGGIADFVRHLNASKNPIHKTVVEF 118

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             E++G    +VE A+ W E     + ++ NTI T EGGTHE G R ALT  + +Y    
Sbjct: 119 GAEEEG---MSVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRAALTSVVNRYGAEK 175

Query: 350 QNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
           +  +    +  +D+      I+SV +  P+F GQTKTKL +   +  V+    +    + 
Sbjct: 176 KLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNEWLVDWF 235

Query: 409 VQNPIEATKLLE-WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
            +NP EA  +++            ++ ++   RK+ +    +PGKLADC       +E+F
Sbjct: 236 DRNPAEAKIIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVF 295

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           IVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG      
Sbjct: 296 IVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGIHDD 355

Query: 528 YREEDLRYE 536
           +  E LRY 
Sbjct: 356 FDIEKLRYH 364


>gi|220680560|dbj|BAH10769.1| DNA gyrase subunit B [Nocardia puris]
          Length = 400

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 115/406 (28%), Positives = 195/406 (48%), Gaps = 34/406 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  + V + R    +SQ +    P      + +   + G  + F  DP+IF     +
Sbjct: 1   NALSTRVEVEIDRDGYHWSQTYKDASPSKL--IQGEPTERTGPTVRFWADPEIFETTT-Y 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK------------------------YGIP 258
           +   + +  Q  A+L+  +    + ++    +                            
Sbjct: 58  NFETVSRRLQEMAFLNKGLTIVLTDERVSDSEITDEVASDTAEAPKHAEPGTEAPVEHKV 117

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +   +++PGGL+ +++     +  I + +     +  G     +E A+ W       + +
Sbjct: 118 KTRTYHYPGGLEDFVRHINRTKQAIHNSVVGFTGKGTGH---ELEVAMQWNSGYSESVHT 174

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIR 375
           + NTI T EGGTHE G R ALT  + KYA+  +  +    ++  DD+      I+SV + 
Sbjct: 175 FANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDDIREGLAAIVSVKVG 234

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           +P+F GQTKTKL + + +  V+    +   H+   NP +A  +++  +  ++ R+  RK 
Sbjct: 235 DPQFEGQTKTKLGNTEVKSFVQKTCNEHLTHWFEANPADAKTIVQKAVSSAQARVAARKA 294

Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LPLRG
Sbjct: 295 RELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRG 354

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           KI+NV  A  +K+  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 KIINVEKARIDKVLKNNEVQSIITAFGTGIHDEFDIAKLRYHKIVL 400


>gi|220680508|dbj|BAH10743.1| DNA gyrase subunit B [Nocardia caishijiensis]
          Length = 399

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 121/405 (29%), Positives = 199/405 (49%), Gaps = 33/405 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS +L   +      ++Q +    P      + +  ++ GT I F  DP+IF     +
Sbjct: 1   NALSSKLEAEIDNDGYHWTQVYKDSKPGKL--VQGEPTSRTGTTIRFWADPEIFETTT-Y 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDK------------------EIAEKYGIP-----E 259
           +   + +  Q  A+L+  +    + ++                  + AE    P     +
Sbjct: 58  NFETVARRLQEMAFLNKGLTITLTDERVTESEVTDEVVSETAEAPKHAEDADAPVEHKVK 117

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              +++PGGL  +++     +S I + +     +  G     +E A+ W       + ++
Sbjct: 118 TRTYHYPGGLVDFVRHINRTKSAIHNSVVGFTGKGTGH---ELEVAMQWNSGYSESVHTF 174

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIRE 376
            NTI T EGGTHE G R ALT  + KYA+  +  +    ++  DD+      I+SV + E
Sbjct: 175 ANTINTHEGGTHEEGFRAALTTVVNKYAKEKKLLKEKDGNLTGDDIREGLAAIVSVKVGE 234

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F GQTKTKL + + +  V+ A  +   H+   NP +A  +++  +  ++ R+  RK R
Sbjct: 235 PQFEGQTKTKLGNTEVKSFVQRACNEHLTHWFEANPADAKTIVQKAVSSAQARMAARKAR 294

Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E V RK+A     LPGKLADC        E++IVEGDSAGGSAK  R+   QA+LPLRGK
Sbjct: 295 ELVRRKSATDLGGLPGKLADCRSKDPGKCEIYIVEGDSAGGSAKSGRDSMYQAILPLRGK 354

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           I+NV  A  +++  N ++  ++ A G     ++    LRY K+I+
Sbjct: 355 IINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYNKIIL 399


>gi|51571603|emb|CAH18968.1| gyrase B [Corallococcus coralloides]
          Length = 373

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 121/379 (31%), Positives = 195/379 (51%), Gaps = 16/379 (4%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G   VN LS+   V + R   ++ Q ++RG+     ++     +KRGT I F+PD ++  
Sbjct: 6   GRPCVNFLSEWFKVRIQRAGKVYEQSYARGVANGAPQEVG-TTDKRGTMIHFKPDTQVME 64

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F+   L +  +  A+L+  +      ++   E         F F GG+ ++++   
Sbjct: 65  TV-DFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD-------FKFEGGISSFVEYLN 116

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           + +  +  +    K+E++G    ++E A+ W +     I ++ N I T EGG+H SG + 
Sbjct: 117 KAKEALHDKPVYIKSEREGV---SLEIAMQWNDGYDERIFTFANNINTHEGGSHLSGFKA 173

Query: 337 ALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  YAE     + +      +D       ++SV +  P+F GQTKTKL + + + 
Sbjct: 174 ALTRTLNSYAEKGSLWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQTKTKLGNSEVKG 233

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
            VE  + D    +L +NP  A K++  +          R+ +  V RK  +    LPGKL
Sbjct: 234 LVEQMVNDQLASFLEENPPLAKKVVAKIGDACRARLAARKARETVRRKGVLDGGGLPGKL 293

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC     H +EL+IVEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  EK+  + +I
Sbjct: 294 ADCQSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTSAEI 353

Query: 514 MDLVQALGCRTRSQYREED 532
           + L+ ALG    ++  + +
Sbjct: 354 VTLITALGTGIGAEDYDPE 372


>gi|220680526|dbj|BAH10752.1| DNA gyrase subunit B [Nocardia flavorosea]
          Length = 400

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 119/406 (29%), Positives = 194/406 (47%), Gaps = 34/406 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L   +      +SQ +   +P      +       GT I F  DP +F     +
Sbjct: 1   NALSSRLEAEIDTDGYHWSQTYKDAVPGQL--VQGDATKATGTTIRFWADPAVFETTT-Y 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDK------------------EIAEKYGIPEKEE-- 262
           +   + +  Q  A+L+  +    + ++                  +  E    P  E   
Sbjct: 58  NFETVSRRLQEMAFLNKGLTIVLTDERVSATEVTDEVVSETAEAPKHDEGGEKPALEHKV 117

Query: 263 ----FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
               +++PGGL+ +++     +  I + +     +  G     +E A+ W       + +
Sbjct: 118 KTRTYHYPGGLEDFVRHINRTKQPIHNSVVGFNGKGPGH---ELEVALQWNSGYSESVHT 174

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIR 375
           + NTI T EGGTHE G R ALT  + +YA+  +  +    ++  DD+      I+SV + 
Sbjct: 175 FANTINTHEGGTHEEGFRAALTTVVNRYAKEKKLLKEKDGNLTGDDIREGLAAIVSVKVS 234

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  ++   +  ++ RL  RK 
Sbjct: 235 EPQFEGQTKTKLGNTEVKSFVQRACNEHLAHWFEANPADAKTIVNKAVSSAQARLAARKA 294

Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE V RK+A     LPGKLADC       ++++IVEGDSAGGSAK  R+   QA+LPLRG
Sbjct: 295 RELVRRKSATDIGGLPGKLADCRSKDPSKSDIYIVEGDSAGGSAKSGRDSMYQAILPLRG 354

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           KI+NV  A  +K+  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 KIINVEKARIDKVLKNAEVQAIITAFGTGIHDEFDIAKLRYHKIVL 400


>gi|220680542|dbj|BAH10760.1| DNA gyrase subunit B [Nocardia neocaledoniensis]
          Length = 400

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 120/406 (29%), Positives = 196/406 (48%), Gaps = 34/406 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS +L   +      ++Q +    P      + +   + GT I F  DP+IF     +
Sbjct: 1   NALSSKLEAEIDTDGYHWAQTYKDAKPGKL--IQGEPTKRTGTTIRFWADPEIFETTT-Y 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDK------------------EIAEKYGIPEKEE-- 262
           +   + +  Q  A+L+  +    +  +                  + AE+      E   
Sbjct: 58  NFETVSRRLQEMAFLNKGLTITLTDQRVTESDVIDEVVSDTAEAPKHAEEGADKPVEHKV 117

Query: 263 ----FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
               + +PGGL  +++     +  I + +     +  G     +E A+ W       + +
Sbjct: 118 KTRTYRYPGGLVDFVRHINRTKQAIHNSVVGFTGKGTGH---ELEVAMQWNSGYSESVHT 174

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIR 375
           + NTI T EGGTHE G R ALT  + KYA+  +   ++  ++  DD+      I+SV + 
Sbjct: 175 FANTINTHEGGTHEEGFRAALTTVVNKYAKEKKLLTEKDGNLTGDDIREGLAAIVSVKVG 234

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  +++  +  ++ R+  RK 
Sbjct: 235 EPQFEGQTKTKLGNTEVKSFVQRACNEHLTHWFEANPADAKTIVQKAVSSAQARVAARKA 294

Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE V RK+A     LPGKLADC        E++IVEGDSAGGSAK  R+   QA+LPLRG
Sbjct: 295 RELVRRKSATDLGGLPGKLADCRSKDPSKCEIYIVEGDSAGGSAKSGRDSMYQAILPLRG 354

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           KI+NV  A  +++  N ++  ++ A G     ++    LRY K+I+
Sbjct: 355 KIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYNKIIL 400


>gi|171702710|dbj|BAG16323.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-3]
          Length = 356

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 128/360 (35%), Positives = 197/360 (54%), Gaps = 9/360 (2%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            ++ Q++ +G  L P+++     +KRGT +TF+PD  IF     +    L    +  ++L
Sbjct: 2   KVYEQEYEKGKSLYPVKQIG-TTDKRGTIVTFKPDATIFTQTLEYSYDTLAARLRELSFL 60

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +    +  + +A+    P  E F+   GLK +++    NR  I S + + + EK   
Sbjct: 61  NKGITITLTDKRHLADDGSQP-VETFHSKEGLKEFIKFLDGNREPIISHVISMENEK--- 116

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRA 354
               VE A+ +       I SY N I T EGGTH  G R+ LTR +KKYA+ +    K  
Sbjct: 117 GEIPVEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRMGLTRTLKKYADASGLLEKLK 176

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             I  DD       I+SV I+EP+F GQTKTKL + +    V  A+ +  ++YL +NP +
Sbjct: 177 FEIAGDDFREGLTAIISVKIQEPQFEGQTKTKLGNREVVSPVSQAVAEMLENYLEENPND 236

Query: 415 ATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  +++ VI  ++ R   +K RE+  RKT +    LPGKL+DCS+      E+++VEGDS
Sbjct: 237 AKIIVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPEKCEIYLVEGDS 296

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGG+AKQ R+R  QA+LPLRGKILNV  A   K+  N++I ++  ALG    ++   + L
Sbjct: 297 AGGTAKQGRDRFFQAILPLRGKILNVEKAMQHKVFENEEIRNIFTALGVTVGTEEDSKAL 356


>gi|171702702|dbj|BAG16319.1| DNA gyrase subunit B [Flavobacterium sp. GMA3-59]
 gi|171702704|dbj|BAG16320.1| DNA gyrase subunit B [Flavobacterium sp. GMA3-60]
          Length = 356

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 128/360 (35%), Positives = 197/360 (54%), Gaps = 9/360 (2%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            ++ Q++ +G  L P+++     +KRGT +TF+PD  IF     +    L    +  ++L
Sbjct: 2   KVYEQEYEKGKSLYPVKQIG-TTDKRGTIVTFKPDATIFTQTLEYSYDTLAARLRELSFL 60

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +    +  + +A+    P  E F+   GLK +++    NR  I S + + + EK   
Sbjct: 61  NKGITITLTDKRHLADDGSQP-VETFHSKEGLKEFIKFLDGNREPIISHVISMENEK--- 116

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRA 354
               VE A+ +       I SY N I T EGGTH  G R+ LTR +KKYA+ +    K  
Sbjct: 117 GEIPVEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRMGLTRTLKKYADASGLLEKLK 176

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             I  DD       I+SV I+EP+F GQTKTKL + +    V  A+ +  ++YL +NP +
Sbjct: 177 FEIAGDDFREGLTAIISVKIQEPQFEGQTKTKLGNREVVSPVSQAVAEMLENYLEENPND 236

Query: 415 ATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  +++ VI  ++ R   +K RE+  RKT +    LPGKL+DCS+      E+++VEGDS
Sbjct: 237 AKTIVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPEKCEIYLVEGDS 296

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGG+AKQ R+R  QA+LPLRGKILNV  A   K+  N++I ++  ALG    ++   + L
Sbjct: 297 AGGTAKQGRDRFFQAILPLRGKILNVEKAMQHKVFENEEIRNIFTALGVTVGTEEDSKAL 356


>gi|171702638|dbj|BAG16287.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702640|dbj|BAG16288.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702642|dbj|BAG16289.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702644|dbj|BAG16290.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702646|dbj|BAG16291.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702648|dbj|BAG16292.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702650|dbj|BAG16293.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702652|dbj|BAG16294.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702654|dbj|BAG16295.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702656|dbj|BAG16296.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702658|dbj|BAG16297.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702660|dbj|BAG16298.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702662|dbj|BAG16299.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702664|dbj|BAG16300.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702666|dbj|BAG16301.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702668|dbj|BAG16302.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702670|dbj|BAG16303.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702672|dbj|BAG16304.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702674|dbj|BAG16305.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702676|dbj|BAG16306.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702678|dbj|BAG16307.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702680|dbj|BAG16308.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702682|dbj|BAG16309.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702684|dbj|BAG16310.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702686|dbj|BAG16311.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702688|dbj|BAG16312.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702690|dbj|BAG16313.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702692|dbj|BAG16314.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
 gi|171702694|dbj|BAG16315.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
          Length = 356

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 129/360 (35%), Positives = 190/360 (52%), Gaps = 9/360 (2%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            I+ Q++ +G  L P+++  +    RGT +TF PDP IF     +    L    +  ++L
Sbjct: 2   KIYEQEYEKGKALYPVKQIGETTK-RGTIVTFYPDPSIFTQTIEYSYDTLSARMRELSFL 60

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +   ++  +E  +K G    E F+   GLK Y++    NR      I    +     
Sbjct: 61  NKGITITFTDKRE-KDKDGNFVSEIFHSTEGLKEYIRYLDGNRE---PIIAHVISMDNDK 116

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRA 354
               VE A+ +       I SY N I T EGGTH  G R  LTR +KKYA+ +    K  
Sbjct: 117 GEIPVEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADSSGMLDKLK 176

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             I  DD       I+SV + EP+F GQTKTKL + +    V  A+ D  ++YL +NP +
Sbjct: 177 FEISGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVVSPVSQAVGDMIENYLEENPND 236

Query: 415 ATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  +++ VI  ++ R   +K RE+  RKT +    LPGKL+DCS+      E+F+VEGDS
Sbjct: 237 ARIIVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVFLVEGDS 296

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGG+AKQ R+R+ QA+LPLRGKILNV  A   K+  N++I ++  ALG    +    + L
Sbjct: 297 AGGTAKQGRDRAFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTIGTAEDSKAL 356


>gi|294963310|gb|ADF50142.1| DNA gyrase subunit B [Bacillus atrophaeus]
          Length = 365

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 131/372 (35%), Positives = 197/372 (52%), Gaps = 13/372 (3%)

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  L VTV R   I  Q + RG+P++ +E          T   F PDP+IF +   
Sbjct: 1   VNALSTTLDVTVHRDGKIHYQAYERGVPMADVEVIGDTDTTG-TITHFVPDPEIFTETTE 59

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +D   L    +  A+L+  VK      +E  E+        + + GG+K+Y++    ++ 
Sbjct: 60  YDYDLLSNRVRELAFLTKGVKITIEDKREEKERKNE-----YCYEGGIKSYVEYLNRSKE 114

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
           ++  E    +  K G    TVE A+ + +     I S+ N I T EGGTHE+G +  LTR
Sbjct: 115 VVHEEPIYIEGTKDGI---TVEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGLTR 171

Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  YA      +    ++  DD+      I+S+   +P+F GQTKTKL + +A+   + 
Sbjct: 172 VINDYARKKGIFKESDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDA 231

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
              +  + +L +NP  A K+++  +  +  R+  +K RE   RK+A+    LPGKLADCS
Sbjct: 232 LFSEALETFLFENPDSARKVIDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCS 291

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +EL+IVEGDSAGGSAKQ R+R  QA+LPLRGKILNV  A  +KI +N ++  ++
Sbjct: 292 SKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMI 351

Query: 518 QALGCRTRSQYR 529
            ALG      + 
Sbjct: 352 TALGTGIGEDFN 363


>gi|307343850|emb|CBJ19530.1| gyrase B subunit [Micromonospora sp. SG15]
          Length = 365

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 107/371 (28%), Positives = 187/371 (50%), Gaps = 9/371 (2%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           + V + +   ++ Q+++   P    +   +  ++ G+ ++F PDP +F     FD   + 
Sbjct: 1   MAVEIHKSGFVWRQQYNNSKPGPLDK--GETTDRTGSAVSFWPDPDVFETV-DFDFQTIY 57

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           +  Q  A+L+  ++     ++   E+ G   +  F + GG+  +++    +++ I   + 
Sbjct: 58  RRLQEMAFLNRALRIHLLDERVAEEENGRQREVTFLYEGGIADFVRHLNASKNPIHKTVV 117

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
               E++G    +VE A+ W E     + ++ NTI T EGGTHE G R ALT  + +Y  
Sbjct: 118 EFAAEEEG---MSVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSVVNRYGT 174

Query: 348 LTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
             +  +    +  +D+      I+SV +  P+F GQTKTKL +   +  V+    +    
Sbjct: 175 DKKLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNEWLVD 234

Query: 407 YLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTE 465
           +  +NP EA  ++ +           ++ ++   RK+ +    +PGKLADC       +E
Sbjct: 235 WFDRNPAEAKMIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESE 294

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
           +FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG    
Sbjct: 295 VFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGIH 354

Query: 526 SQYREEDLRYE 536
             +  E LRY 
Sbjct: 355 DDFDMEKLRYH 365


>gi|29652914|gb|AAO87426.1| DNA gyrase B [Listeria monocytogenes]
          Length = 164

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 74/160 (46%), Positives = 101/160 (63%)

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  
Sbjct: 1   EIFSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARL 60

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ M 
Sbjct: 61  DRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMR 120

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604
            L++  ++++  PPL++I  G +  Y + +   +  L   
Sbjct: 121 PLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL 160


>gi|261488476|emb|CAU94913.1| DNA gyrase subunit B [Aquabacterium parvum]
          Length = 345

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 117/355 (32%), Positives = 189/355 (53%), Gaps = 28/355 (7%)

Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178
           + H   P +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VN LS  L +TV R   
Sbjct: 1   DKHE--PKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNGLSKWLRLTVRRDGQ 58

Query: 179 IFSQKFSRGIP------------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAAR 226
           +   +F +G+P            +SP++   +  +KRGT + F PD +IF +   +    
Sbjct: 59  VHFIEFKQGVPQDRVIEMRDGVEVSPMKVIGET-DKRGTEVHFLPDVEIFKENNEYHYEI 117

Query: 227 LLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSE 286
           L K  +  ++L+  VK     ++   E         F + GG+K +++   + +++++  
Sbjct: 118 LAKRLRELSFLNNGVKIRLIDERNNKEDN-------FAYAGGVKGFVEFINKGKNILNPS 170

Query: 287 IFTGKTEK--KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
           IF  + +K  +      VE A+ W E     +  + N I   +GGTH +GLR A+TR I 
Sbjct: 171 IFHAQGDKVSENGTNVGVEVAMQWNESYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVIN 230

Query: 344 KYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
           KY E  +   K  + +  DD+      ++SV + EP+F+ QTK KLVS + +  VE+ + 
Sbjct: 231 KYIEDNELAKKAKVDVGGDDMREGLACVVSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVS 290

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLAD 455
                +L++NPI+A  +   ++E +  R   RK RE+ R+   +  L LPGKLAD
Sbjct: 291 RLLTDWLLENPIDAKIICNKIVEAARAREAARKAREMTRRKGVLDGLGLPGKLAD 345


>gi|220680576|dbj|BAH10777.1| DNA gyrase subunit B [Nocardia transvalensis]
          Length = 399

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 118/405 (29%), Positives = 196/405 (48%), Gaps = 33/405 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L   +      ++Q++    P      +     + GT I F  DP IF     +
Sbjct: 1   NALSTRLQADIDYGGYHWTQEYKDAKPGKL--VQGDPTKRTGTTIRFWADPNIFETTY-Y 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIA---------EKYGIPEKE------------ 261
           +   + +  Q  A+L+  +    +  +            E    P+ E            
Sbjct: 58  NFETVSRRLQEMAFLNKGLTITLTDQRVSDSEITEEVVSETAEAPKHEGEAATVTEQKVK 117

Query: 262 --EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              +++PGGL+ +++     +  I + +    ++  G     +E A+ W       + ++
Sbjct: 118 TRTYHYPGGLEDFVKHINRTKQAIHNTVVGFTSKGTGH---ELEVAMQWNSGYSESVHTF 174

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            NTI T EGGTHE G R ALT  + KYA+  +   ++  ++  DD+      I+SV + E
Sbjct: 175 ANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLIKEKDGNLTGDDIREGLAAIVSVKVGE 234

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F GQTKTKL + + +  V+    +   H+   NP +A  +++  +  ++ R+  RK R
Sbjct: 235 PQFEGQTKTKLGNTEVKSFVQRTCNENLAHWFEANPADAKTIVQKAVSSAQARVAARKAR 294

Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LP+RGK
Sbjct: 295 ELVRRKSATDLGGLPGKLADCRSKDPRLSEIYIVEGDSAGGSAKSGRDSMYQAILPIRGK 354

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           I+NV  +  +K+  N ++  ++ A G     ++    LRY K+I+
Sbjct: 355 IINVEKSRIDKVLKNNEVQSIITAFGTGIHDEFDISKLRYHKIIL 399


>gi|318066837|emb|CBY89130.1| DNA gyrase subunit B [Halomonas desiderata]
          Length = 349

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 125/360 (34%), Positives = 190/360 (52%), Gaps = 16/360 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +T+ R   +  Q +  G+P +PL    K     GTR+ F+P P  F +
Sbjct: 1   VSVVNALSEELKLTIWRAGQVHEQIYRHGVPQAPLSVVGKTEK-TGTRVHFKPSPDTFAN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V    + ++   E       E F++ GGLK ++     
Sbjct: 60  I-EFHYDILAKRLRELSFLNSGVAIRLTDERSGKE-------ELFHYEGGLKAFVNHLNS 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N+++++         + G     VE A+ W +     I  Y N I   +GGTH +G R A
Sbjct: 112 NKTVLNPVFHFEAEREDGV---VVEVAMQWNDSFAENIFCYTNNIPQRDGGTHLAGFRAA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRTLNGYIESEGLLKKSKVATSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  +   F  YL++NP +A  ++  +++ +  R   RK      RK A+    LPGKLA
Sbjct: 229 VEQEMGRLFSDYLIENPNDAKSIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLA 288

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +ELF+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 289 DCQEKDPSLSELFLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 348


>gi|244537698|emb|CAX15422.1| gyrase B [Polymorphospora rubra]
          Length = 349

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 105/355 (29%), Positives = 182/355 (51%), Gaps = 10/355 (2%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V + +   ++ Q +S  +P    +   +  ++ G+ ++F PDP +F     F    + + 
Sbjct: 2   VEIHKSGHVWRQTYSNSVPSPLEK--GETTDRTGSSVSFWPDPGVFETV-DFAFETIYRR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            Q  A+L+  +      ++ + E+ G   +  F + GG+  +++     +S I   +   
Sbjct: 59  LQEMAFLNRGLTIRLRDER-VQEEDGNAREVTFLYRGGIADFVRHLNNTKSPIHKSVIEF 117

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             E++G     VE A+ W E     + ++ NTI T EGGTHE G R ALT  + +Y    
Sbjct: 118 GAEEEG---MAVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRAALTTVVNRYGADK 174

Query: 350 QNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
           +  +    +  +D+      I+SV +  P+F GQTKTKL +   +  V+    +    + 
Sbjct: 175 KLLKGDEKLTGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNEWLVDWF 234

Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELF 467
            +NP E  +++    + S  R+  ++ R++ R+ ++     +PGKLADC       +E+F
Sbjct: 235 DRNPAEVKQIITKATQASRARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVF 294

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           IVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG 
Sbjct: 295 IVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGT 349


>gi|220680586|dbj|BAH10782.1| DNA gyrase subunit B [Nocardia vinacea]
          Length = 399

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 116/405 (28%), Positives = 193/405 (47%), Gaps = 33/405 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L   +      +SQ +    P      + +   + GT I F  DP+IF     +
Sbjct: 1   NALSHRLEPEIDHDGYHWSQTYQDAKPGKL--VQGEPTKRTGTTIRFWADPEIFETTT-Y 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-----------------------YGIPE 259
           +   + +  Q  A+L+  +    + ++                                +
Sbjct: 58  NFETVARRLQEMAFLNKGLTIVLTDERVSDTDVTDEVVSETAEAPKHADEEAPAPAHKVK 117

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              +++PGGL+ +++     +  I + + +   +  G     +E A+ W       + ++
Sbjct: 118 TRTYHYPGGLEDFVKHINRTKQPIHNSVVSFTGKGTGH---ELEVAMQWNSGYSESVHTF 174

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIRE 376
            NTI T EGGTHE G R ALT  + KYA+  +  +    ++  DD+      I+SV + E
Sbjct: 175 ANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKDKDGNLTGDDIREGLAAIVSVKVGE 234

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F GQTKTKL + + +  V+    +   H+   NP +A  ++   +  ++ R+  RK R
Sbjct: 235 PQFEGQTKTKLGNTEVKSFVQRTCNEHLSHWFEANPADAKTIVNKAVSSAQARVAARKAR 294

Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LPLRGK
Sbjct: 295 ELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGK 354

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           I+NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 IINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYHKIVL 399


>gi|156536678|gb|ABU80443.1| gyrase B [Photorhabdus temperata subsp. thracensis]
          Length = 342

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 120/352 (34%), Positives = 183/352 (51%), Gaps = 15/352 (4%)

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
              ALS++L + + R   +  Q +  G+P +PL+   +   + GTR+ F P    F D  
Sbjct: 2   CCYALSEKLELIIRRDGQVHEQTYHLGVPQNPLKVVGET-EQTGTRVRFWPSMDTFRDNT 60

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L K  +  ++L+  V       +   E       + F++ GG+K +++   +N+
Sbjct: 61  EFQHDILAKRLRELSFLNSGVSIRLLDKRTNIE-------DHFHYEGGIKAFVEFLNKNK 113

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + I   +F   TEK       VE A+ W +     I  + N I   +GGTH  G R A+T
Sbjct: 114 TPIHPNVFYFSTEKDSI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMT 170

Query: 340 RGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  Y +      K  +S   DD     V ++SV + +P+F+ QTK KLVS + +  VE
Sbjct: 171 RTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVE 230

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADC 456
             + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLADC
Sbjct: 231 TLMNEKLVEYLLENPNDAKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADC 290

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
            +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ 
Sbjct: 291 QERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 342


>gi|307343800|emb|CBJ19505.1| gyrase B subunit [Micromonospora sp. GUI12]
          Length = 364

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 106/369 (28%), Positives = 183/369 (49%), Gaps = 9/369 (2%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V + +   ++ Q++    P    +   +  ++ G+ ++F PDP +F     FD   + + 
Sbjct: 2   VEIHKDGFVWRQQYHHSKPTPLEK--GEATDRTGSAVSFWPDPDVFETV-DFDFHTIYRR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            Q  A+L+  +      ++   ++ G   +  F++ GG+  +++    ++S I   +   
Sbjct: 59  LQEMAFLTRGLTIHLLDERVPEDEDGKTREVTFHYEGGIADFVRHLNASKSPIHKTVVEF 118

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             E+ G    +VE A+ W E     + ++ N I T EGGTHE G R ALT  + +Y    
Sbjct: 119 GAEETG---MSVEIAMQWNESYGESVYTFANNINTHEGGTHEEGFRAALTSVVNRYGAEK 175

Query: 350 QNKRAISI-ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
           +  +       +D+      I+SV + +P+F GQTKTKL +   +  V+    +    + 
Sbjct: 176 KLLKGDERLSGEDIREGLAAIISVKLTDPQFEGQTKTKLGNTPVKGFVQRVCNESLVDWF 235

Query: 409 VQNPIEATKLLE-WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
            +NP EA  +++            ++ ++   RK+ +    +PGKLADC       +E+F
Sbjct: 236 DRNPAEAKIIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVF 295

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           IVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG      
Sbjct: 296 IVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGIHDD 355

Query: 528 YREEDLRYE 536
           +  E LRY 
Sbjct: 356 FDIEKLRYH 364


>gi|118201808|gb|ABK79717.1| DNA gyrase subunit b [Sagittula stellata]
          Length = 357

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 122/366 (33%), Positives = 185/366 (50%), Gaps = 13/366 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L + + R       KF  G     L        ++GT + F      F +   +
Sbjct: 1   NALSVWLELRIWRNGKEHYAKFEHGETSEHLRVVGDAEGEQGTEVRFLASTDTFSNL-DY 59

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L K  +  A+L+  V+     D+        P   E ++ GG++ +++    ++  
Sbjct: 60  DFHTLEKRLRELAFLNSGVRIILDDDR-----PAEPLHIELHYEGGVREFVKYLDRSKQA 114

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           +  +    + EK G     VE A+ W +   E    + N I   +GGTH +G R ALTR 
Sbjct: 115 VMPDPIYMEGEKDGI---GVEVAMWWNDSYHENVLPFTNNIPQRDGGTHLAGFRGALTRQ 171

Query: 342 IKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           ++KYA+ +   +   I+   DD       +LSV + +P+F+ QTK KLVS + +  VE+ 
Sbjct: 172 LQKYAQESGIAKREKINFTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPAVESL 231

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    +  +NP EA ++   +IE +  R   RK RE   RKTA+       KL DCS+
Sbjct: 232 MNEKLGEWFEENPNEAKQITGKIIEAAMAREAARKARELTRRKTAMDVSFNAAKLKDCSE 291

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
             A  TELF+VEGDSAGGSA+  R+R  QA+LPLRGKILNV  A  +++  +Q+I +LV 
Sbjct: 292 KDASKTELFLVEGDSAGGSAQTGRDRRTQAILPLRGKILNVERARFDRMLGSQEIGNLVM 351

Query: 519 ALGCRT 524
           ALG   
Sbjct: 352 ALGTGI 357


>gi|299741517|ref|XP_001834519.2| DNA topoisomerase II [Coprinopsis cinerea okayama7#130]
 gi|298404747|gb|EAU87295.2| DNA topoisomerase II [Coprinopsis cinerea okayama7#130]
          Length = 966

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 67/279 (24%), Positives = 107/279 (38%), Gaps = 54/279 (19%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           ++DD  D  S +      S+ + ++  + P                     L  LE +  
Sbjct: 131 LSDDDED--SGMDTDEPTSAARRQEEPDEP---------------------LTQLEHILK 167

Query: 61  RPGMYIGGTDE-----------------------KALHHLFSEVIDNAMDEVIAGY-ANL 96
           RP  YIG  +                             +  E++ NA D  I     + 
Sbjct: 168 RPDSYIGNIEIISTPMWTYDSETIRMVHREVKYVPGFFKIVDEILVNAADNKINDPSMDT 227

Query: 97  IEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
           +++++D   G ++V +NGRGIP+E H K       E+I   L     +D+   +++GG +
Sbjct: 228 LKITIDVEEGTISVYNNGRGIPIEIHSK-EKMYIPEMIFGHLLTSTNYDDDEKKLTGGRN 286

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG---TRITFRPD 212
           G G  + N  S E  V  A +NT    K +    +S   K +  +N RG   TRITFRPD
Sbjct: 287 GYGAKLANIYSLEFTVETADKNTSQKYKQTWTDNMSKCGKAKITKNTRGEEYTRITFRPD 346

Query: 213 PKIFGDK--AGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            K FG           L +     A     VK   + ++
Sbjct: 347 LKRFGMNSINEDTVNLLKRRVFDMADTVKDVKVLLNDER 385



 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 76/310 (24%), Positives = 131/310 (42%), Gaps = 25/310 (8%)

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTK  L    ++   +  + D F    V +      +L W   +++++++R    + +R 
Sbjct: 404 QTKELLTLPSSKFGSKPTISDEFIKK-VAHSGIVDNVLNWAKFKADQQMKRADGTKRSRL 462

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILN 498
             + KL             A    L + EGDSA   A        R N  V PLRGK+LN
Sbjct: 463 LGLAKLSDANN---AGTRHAQDCTLILTEGDSAKALAIAGLGVVGRDNFGVFPLRGKLLN 519

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLT 557
           V  A  +++  N++I ++ + +G +    Y     LRY +V+IMTD D DG+HI  L++ 
Sbjct: 520 VREACHDQVMKNEEIQNIKKIMGLQHNKDYTNTSSLRYGRVMIMTDQDHDGSHIKGLIIN 579

Query: 558 FFYQEMYDLIEQK-HLFLISPPL--FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           F       L++    L     PL  + + +G K          ++ LEE       K E 
Sbjct: 580 FLDHLYPSLLKIPDFLVEFVTPLSGY-VKKGNKVKDFFTIPEYEQWLEETPDA--RKWES 636

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
             +KG         +E      KR      +++      +   + +K    KADER +++
Sbjct: 637 KYYKGF--SEDKGAREYFSKMEKR----FHLHRRKKGTVNIDLAFSK---KKADERKEWL 687

Query: 675 QER--ASFID 682
           ++    +F+D
Sbjct: 688 RQYKPGTFLD 697


>gi|220680572|dbj|BAH10775.1| DNA gyrase subunit B [Nocardia testacea]
          Length = 400

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 119/406 (29%), Positives = 199/406 (49%), Gaps = 34/406 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L   V      +SQ +   +P      + +     GT I F  DP +F     +
Sbjct: 1   NALSSRLEAEVDTDGYHWSQTYKDAVP--GHLVQGEPTKATGTTIRFWADPAVFETTT-Y 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSC---------DKEIAEKYGIPEKEE----------- 262
           +   + +  Q  A+L+  +    +          D+ +++    P+ ++           
Sbjct: 58  NFETVSRRLQEMAFLNKGLTIVLTDLRVSDTEITDEVVSDTAEAPKHDDGGEKPAAEPKV 117

Query: 263 ----FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
               +++PGGL+ +++     +  I + + +   +  G     +E A+ W       + +
Sbjct: 118 KTRTYHYPGGLEDFVRHINRTKQPIHNSVVSFNGKGTGH---ELEVAMQWNSGYSESVHT 174

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIR 375
           + NTI T EGGTHE G R ALT  + +YA+  +  +    ++  DD+      I+SV + 
Sbjct: 175 FANTINTHEGGTHEEGFRAALTTVVNRYAKEKKLLKEKDGNLTGDDIREGLAAIVSVKVS 234

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  ++   +  ++ R+  RK 
Sbjct: 235 EPQFEGQTKTKLGNTEVKSFVQRACNEHLAHWFEANPADAKTIVNKAVSSAQARVAARKA 294

Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LPLRG
Sbjct: 295 RELVRRKSATDIGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRG 354

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           KI+NV  A  +K+  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 KIINVEKARIDKVLKNAEVQSIITAFGTGIHDEFDIAKLRYHKIVL 400


>gi|324962686|gb|ADY62445.1| gyrase subunit B [Frankia sp. ArI3]
          Length = 360

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 105/330 (31%), Positives = 160/330 (48%), Gaps = 21/330 (6%)

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           SL  +  + VVDNGRGIPV  HP    +  +E++LTTLHAGGKFD  +Y +SGGLHGVG+
Sbjct: 1   SLLADAAVRVVDNGRGIPVGMHP-TEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHGVGV 59

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L V +     ++ Q +    P +PL  K     K GT +TF  DP IF   
Sbjct: 60  SVVNALSTKLDVEIQVDGHVWFQPYVATRPAAPL-VKTGTTKKTGTSVTFWADPTIFET- 117

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             +    L +  Q  A+L+  +      ++          +  + +  GL  ++      
Sbjct: 118 TEYKFETLSRRLQEMAFLNKGLSITLIDER-----PEERLEVTYKYSNGLVDFVAHLNAT 172

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  I   + + +++  G      E A+ W       + ++ NTI T EGGTHE G R AL
Sbjct: 173 KDAIHRSVISLESKGVGI---EAELAMQWNAGYSESVYTFANTINTHEGGTHEEGFRAAL 229

Query: 339 TRGIKKYAELTQNKRAISI---------ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           T  +  YA+     + +             DD+      I+SV + +P+F GQTKTKL +
Sbjct: 230 TSAVNAYAKDQNLLKPVKAGAKSGDERLSGDDIREGLTAIISVKLAQPQFEGQTKTKLRN 289

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLL 419
            +A++ V+         +   N  EA  ++
Sbjct: 290 TEAKKFVQEMCYSALKDWFEVNRTEARAIV 319


>gi|164456611|dbj|BAF97798.1| gyrase B subunit [Photobacterium damselae subsp. damselae]
          Length = 354

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 123/363 (33%), Positives = 196/363 (53%), Gaps = 14/363 (3%)

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225
           S+++ +T+ R   I  Q +  G+P +PLE      ++ GT I F P  + F +   F   
Sbjct: 1   SEKVELTIYRHGHIHRQIYRHGVPQAPLEVIGDT-DRTGTTIRFWPSSETFTNTT-FQYE 58

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
            L K  +  ++L+  V    + ++E        +++ F + GG++ +++    N++ I  
Sbjct: 59  ILAKRLRELSFLNSGVSIKLNDERE------EGKQDHFMYEGGIQAFVEHLNRNKTPIHQ 112

Query: 286 EIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKK 344
           ++F    E++     TVE A+ W +     I  + N I   +GGTH +G R ALTR +  
Sbjct: 113 KVFHFNVERED--GITVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNN 170

Query: 345 YAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRD 402
           Y E      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE+ + +
Sbjct: 171 YMEKEGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVESTMGE 230

Query: 403 PFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIA 461
               +L++NP +A  +   +I+ S  R   RK R    RK A+    LPGKLADC +   
Sbjct: 231 KLGEFLLENPGDAKTVCTKIIDASRAREAARKAREMTRRKGALDLAGLPGKLADCQEKDP 290

Query: 462 HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
             +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ A+G
Sbjct: 291 ALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAMG 350

Query: 522 CRT 524
           C  
Sbjct: 351 CGI 353


>gi|217031310|gb|ACJ74211.1| gyrase b [Enterobacter cloacae]
          Length = 336

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 121/347 (34%), Positives = 187/347 (53%), Gaps = 15/347 (4%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS +L + + R+  I  Q ++ G+P +PL       +K GT + F P  + F 
Sbjct: 1   GVSVVNALSQKLELVIQREGKIHRQLYTHGVPQAPLAVTGDT-DKTGTMVRFWPSLETFT 59

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   
Sbjct: 60  NVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE-------DHFHYEGGIKAFVEYLN 112

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           +N++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R 
Sbjct: 113 KNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRA 169

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + + 
Sbjct: 170 AMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKS 229

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453
            VE  + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKL
Sbjct: 230 AVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKL 289

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           ADC +     +EL++VEGDSAGGSAKQ R R NQA+LPL+GKIL + 
Sbjct: 290 ADCQERDPALSELYLVEGDSAGGSAKQGRTRKNQAILPLKGKILTLR 336


>gi|197700097|gb|ACH72050.1| DNA gyrase subunit B [Ruegeria mobilis]
          Length = 357

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 117/366 (31%), Positives = 185/366 (50%), Gaps = 13/366 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALSD L + + R       +F RG  +  L       ++ GT + F      F +   +
Sbjct: 1   NALSDWLELRIWRSGKEHVARFERGDTVKHLTVVGDCGDRTGTEVRFLASTDTFSNL-EY 59

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  A+L+  V+   + ++          + E ++ GG+  +++    +++ 
Sbjct: 60  SFETLEKRLRELAFLNSGVRIVVTDER-----PAERLESELFYEGGVNEFVKYLDRSKTP 114

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +       K EK       +E A+ W +     +  + N I   +GGTH +G R ALTR 
Sbjct: 115 VMDAPIYIKGEKDDI---GIEIAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRT 171

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  YA+ +    K  +S   DD       +LSV + +P+F+ QTK KLVS + +  VE+ 
Sbjct: 172 INNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESL 231

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    +  +NP  A +++  +IE +  R   RK RE   RKTA+    L GKL DCS+
Sbjct: 232 MGEKLAEWFEENPQVAKQVVGKIIEAALAREAARKARELTRRKTAMDVNFLAGKLKDCSE 291

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TE+F+VEGDSAGGSA+  R+R  QA+LPL+GKILNV  A  +++  +Q+I +LV 
Sbjct: 292 KDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVM 351

Query: 519 ALGCRT 524
           ALG   
Sbjct: 352 ALGTGI 357


>gi|15551691|emb|CAC69421.1| DNA gyrase B subunit [Serratia liquefaciens]
          Length = 323

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 106/334 (31%), Positives = 176/334 (52%), Gaps = 15/334 (4%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG+SVVNALS++L + + R+  +  Q ++ G PLSPL+   +  +
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYAMGEPLSPLKVVGET-D 59

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           + GT + F P  + F +   F+   L K  +  ++L+  V       +   E       +
Sbjct: 60  QTGTTVRFWPSYETFTNNTEFEYDILAKRLRELSFLNSGVSIRLKDKRTDKE-------D 112

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F++ GG+K +++   +N++ I   +F   T K       VE A+ W +     I  + N
Sbjct: 113 HFHYEGGIKAFVEYLNKNKTPIHPNVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTN 169

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I   +GGTH  G R A+TR +  Y +      K  IS   DD     + ++SV + +P+
Sbjct: 170 NIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPK 229

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQRE 437
           F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+        R+ +  
Sbjct: 230 FSSQTKDKLVSSEVKTAVETLMNEKLVDYLMENPGDAKIVVGKIIDAARAREAARKAREM 289

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
             RK A+    LPGKLADC +     +EL++VEG
Sbjct: 290 TRRKGALDLAGLPGKLADCQERDPALSELYLVEG 323


>gi|118201786|gb|ABK79706.1| DNA gyrase subunit b [Octadecabacter antarcticus]
          Length = 357

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 118/366 (32%), Positives = 184/366 (50%), Gaps = 13/366 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALSD L + + R       +F  G  +  LE      ++ GT + F      F ++  F
Sbjct: 1   NALSDYLELRIWRNGKEHYARFEGGFTVKHLEVVADCGDRTGTEVRFLASLDTFSNR-EF 59

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  A+L+  V+   + ++            E Y+ GG+K +++    +++ 
Sbjct: 60  YFETLEKRLRELAFLNSGVRIILTDER-----PAEHLVSELYYDGGVKEFVKYLDRSKTS 114

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           I  E      E+       VE A+ W +   E+   + N I   +GGTH +G R ALTR 
Sbjct: 115 ILPEPIYVIGERDEI---VVEVAMWWNDSYNEMVLPFTNNIPQRDGGTHMAGFRAALTRT 171

Query: 342 IKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  YA+ +   +        DD       +LS+ + +P+F+ QTK KLVS + +  VEN 
Sbjct: 172 INNYAQSSGIAKREKISFTGDDAREGLTCVLSIKVPDPKFSSQTKDKLVSSEVRPAVENI 231

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    +  +NP  A  ++  ++E +  R   RK R+   RKTA+    L GKL DCS+
Sbjct: 232 MNEKLSEWFEENPQIAKIVVSKIVEAAHAREAARKARDLTRRKTAMDVNFLAGKLKDCSE 291

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TE+F+VEGDSAGGSA+  R+R  QA+LPL+GKILNV  A  +++  +Q+I +LV 
Sbjct: 292 KDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVM 351

Query: 519 ALGCRT 524
           ALG   
Sbjct: 352 ALGTGI 357


>gi|2196822|gb|AAB80828.1| DNA gyrase beta-subunit [Shewanella putrefaciens]
          Length = 419

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 128/417 (30%), Positives = 207/417 (49%), Gaps = 15/417 (3%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T   AG     +T +       + + VVNALS +L +T+ R   ++ Q ++ G+P 
Sbjct: 1   EVIMTVPRAGVNSKINTTDAYVDRSRIRVPVVNALSKKLQMTIRRAGKVYEQFYTHGVPD 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +P+++        GT I F P    F D   F    L K  +  ++L+  V      +++
Sbjct: 61  APIKEIGDATK-TGTEIRFWPSEDTFSDV-EFHFEILAKRVRELSFLNSGVGIRLVEERD 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   + E F + GG+  ++     N++ ++ ++     E++     TVE A+ W +
Sbjct: 119 N-------KNEFFKYEGGISAFVDYLNRNKTFVNKDVCPFMQERED--GITVEVAMQWND 169

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAV 367
                I  + N I   +GGTH  G R ALTR +  Y E      K   S   DD      
Sbjct: 170 GYQENIFCFTNNIPQRDGGTHLVGFRSALTRNLNSYMENEGYNKKGKTSATGDDAREGLT 229

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            ++SV + +P+F+ QTK KLVS + +  VE  + +  + YL++NP +A  ++  +++ + 
Sbjct: 230 AVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEKLNDYLLENPADAKLIVGKIVDAAR 289

Query: 428 ERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   RK R    RK A+    LPGK+ADC +     +E++IVEGD A GS KQ RNR N
Sbjct: 290 AREAARKAREMTRRKGALDLGGLPGKMADCQEKDPGLSEIYIVEGDFACGSGKQGRNRKN 349

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTD 543
           QA+LPL+GKILNV  A  +K    Q++  L+ A+GC     Y +      ++    D
Sbjct: 350 QAILPLKGKILNVEKARFDKKLFFQEVATLITAIGCGIGGSYHDRSAYQGEICSHRD 406


>gi|15551695|emb|CAC69419.1| DNA gyrase B subunit [Serratia fonticola]
          Length = 323

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 103/334 (30%), Positives = 176/334 (52%), Gaps = 15/334 (4%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG+SVVNALS++L + + R+  +  Q +  G P +PL+   +  +
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKHGEPQAPLKVVGET-D 59

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           + GT + F P  + F +   F+   L K  +  ++L+  V       +   E       +
Sbjct: 60  QTGTTLRFWPSFQTFTNNIEFEYDILAKRLRELSFLNSGVSIRLKDKRNDRE-------D 112

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F++ GG++ +++   +N++ I   +F   T K       VE A+ W +     I  + N
Sbjct: 113 HFHYEGGIRAFVEYLNKNKTPIHPNVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTN 169

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I   +GGTH +G R A+TR +  Y +      K  IS   DD     + ++SV + +P+
Sbjct: 170 NIPQRDGGTHLAGFRAAMTRTLNTYMDKEGYSKKSKISATGDDAREGLIAVVSVKVPDPK 229

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQRE 437
           F+ QTK KLVS + +  VE+ + +    YL++NP +A  ++  +I+        R+ +  
Sbjct: 230 FSSQTKDKLVSSEVKTAVESLMNEKLVDYLMENPADAKIVVGKIIDAARAREAARKAREM 289

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
             RK A+    LPGKLADC +     +EL++VEG
Sbjct: 290 TRRKGALDLAGLPGKLADCQERDPALSELYLVEG 323


>gi|171702746|dbj|BAG16341.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-118]
          Length = 356

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 129/360 (35%), Positives = 195/360 (54%), Gaps = 9/360 (2%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            ++ Q++ +G  L P+++  +    RGT +TF PDP IF     +    L    +  ++L
Sbjct: 2   KVYEQEYEKGKALYPVKQIGETTK-RGTIVTFYPDPSIFTQTIEYSYDTLSARMRELSFL 60

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +   ++  +E  +K G    E F+   GLK Y++    NR  I + + +  +EK   
Sbjct: 61  NKGITITFTDKRE-LDKDGNFVSEIFHSTEGLKEYIRYLDGNREPIIAHVISMDSEK--- 116

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRA 354
               VE A+ +       I SY N I T EGGTH  G R  LTR +KKYA+ +    K  
Sbjct: 117 GEIPVEVALIYNTSYSENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGMLDKLK 176

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             I  DD       I+SV + EP+F GQTKTKL + +    V  A+ D  + YL +NP +
Sbjct: 177 FDISGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVVSPVSQAVGDMIEAYLEENPND 236

Query: 415 ATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  +++ VI  ++ R   +K RE+  RKT +    LPGKL+DCS+      E+++VEGDS
Sbjct: 237 ARIIVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEVYLVEGDS 296

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGG+AKQ R+R+ QA+LPLRGKILNV  A   K+  N++I ++  ALG    ++   + L
Sbjct: 297 AGGTAKQGRDRAFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTVGTEEDSKAL 356


>gi|15551719|emb|CAC69399.1| DNA gyrase B subunit [Hafnia alvei]
          Length = 323

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 104/334 (31%), Positives = 171/334 (51%), Gaps = 15/334 (4%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG+SVVNALS++L + + R+  +  Q ++ G+P  PL+       
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYAHGVPQFPLKVVGDT-E 59

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             GT + F P  + F +   F    L K  +  ++L+  V       ++  E       +
Sbjct: 60  ITGTTVGFWPSLQTFSNHTEFQYDILAKRLRELSFLNSGVSIRLRDKRDNRE-------D 112

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F++ GG+K +++   +N++ I   +F   T K       VE A+ W +     I  + N
Sbjct: 113 HFHYEGGIKAFVEYLNKNKTPIHPNVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTN 169

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I   +GGTH +G R A+TR +  Y E      K  +S   DD     + ++SV + +P+
Sbjct: 170 NIPQRDGGTHLAGFRAAMTRTLNSYMEKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPK 229

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQRE 437
           F+ QTK KLVS +    VE  + +    YL +NP +A  ++  +I+        R+ +  
Sbjct: 230 FSSQTKDKLVSSEVNTAVETQMNELLAEYLQENPGDAKIVVGKIIDAARAREAARKAREM 289

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
             RK A+    LPGKLADC +     +EL++VEG
Sbjct: 290 TRRKGALDLAGLPGKLADCQERDPAHSELYLVEG 323


>gi|148762371|dbj|BAF63887.1| DNA gyrase subunit B [Halobacillus locisalis]
          Length = 325

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 116/335 (34%), Positives = 174/335 (51%), Gaps = 13/335 (3%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG SVVNALS +L V V     I  Q F RG+P + L+   +  +  GTRI
Sbjct: 1   YKVYGGLHGVGASVVNALSTKLEVYVHLNGKIHYQSFHRGVPEADLKVIGET-DVTGTRI 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PDP+IF +   +    L    +  A+L+  +       +   E        ++Y+ G
Sbjct: 60  QFKPDPEIFSETQEYKFETLANRLRELAFLNKGLTITVQDKRTDEE------PVDYYYEG 113

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEG 327
           G+ +Y++     R  +    F    + + +    +++   +      I +Y N I T EG
Sbjct: 114 GIVSYVEHLNRTREALHETFFVEDEQDEISIEIAIQYNDGFA---SNIYTYANNIHTYEG 170

Query: 328 GTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTHESG +  LTR I  YA      +    ++  DD+      I+S+   +P+F GQTKT
Sbjct: 171 GTHESGFKTGLTRVINDYARKNNMFKDTDPNLTGDDVREGLTAIVSIKHPDPQFEGQTKT 230

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444
           KL + +A+   +    + F  +L +NP  A  ++E  +  S  R+  +K RE   RK A+
Sbjct: 231 KLGNSEARTATDALFSEGFSKFLFENPNMAKIIVEKGLMASRARMAAKKARELTRRKNAL 290

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
               LPGKLADCS   A+ +EL+IVEGDSAGGSAK
Sbjct: 291 EVSNLPGKLADCSSKDANISELYIVEGDSAGGSAK 325


>gi|311358936|gb|ADP94157.1| GyrB [Geobacillus stearothermophilus]
          Length = 339

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 124/346 (35%), Positives = 188/346 (54%), Gaps = 14/346 (4%)

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           +T LHAGGKF    Y++SGGLHGVG SVVNALS+ L V V R   I  Q++ RG P + L
Sbjct: 4   MTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSEWLEVYVYRDGKIHYQRYERGEPCTDL 63

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           +   +  ++ GT   F+PDP+IF +   FD   L    +  A+L+  +K   + ++    
Sbjct: 64  QVIGET-DRTGTTTRFKPDPEIFTETTEFDYETLATRLRELAFLNRGLKITLTDERVDNR 122

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
           K       E+ + GG+++Y++     R ++  E      E+ G     VE A+ + +   
Sbjct: 123 KN------EYVYEGGIRSYVRHLNRTREVLHEEPIYIAGERDGI---AVEIALQYNDGYT 173

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
             I S+ N I T EGGTHESG ++ALTR I  YA   Q   +   ++  DD+      I+
Sbjct: 174 SNIYSFVNNIHTHEGGTHESGFKMALTRIINDYARKQQIFKENDANLTGDDVREGLTAIV 233

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEER 429
           S+    P+F GQTKTKL + DA+   +    + F+ +L++NP  A K++E  ++      
Sbjct: 234 SIKHPSPQFEGQTKTKLGNSDARTVTDAVFSEQFETFLLENPTIARKIVEKGMMAARARL 293

Query: 430 LRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
             ++ +    RK+A+    LPGKLADCS      +EL++VEGDSAG
Sbjct: 294 AAKKARELTRRKSALEISXLPGKLADCSSRDPSISELYVVEGDSAG 339


>gi|148762373|dbj|BAF63888.1| DNA gyrase subunit B [Halobacillus profundi]
          Length = 325

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 118/336 (35%), Positives = 176/336 (52%), Gaps = 15/336 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG SVVNALS +L V V     I  Q + RG+P   ++   +  ++ GTRI
Sbjct: 1   YKVCGGLHGVGASVVNALSSKLEVFVHLNGKIHYQAYHRGVPEEDVKVIGET-DQTGTRI 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PD +IF +   +    L    +  A+L+  +       +   +         +YF G
Sbjct: 60  HFKPDEEIFRETQEYKFEILANRLRELAFLNKGLTITIEDKRTDED------PVNYYFEG 113

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+ +Y++     R  +  E F  + E+      ++E A+ + +     + SY N I T E
Sbjct: 114 GILSYVEHMNRTREALH-EAFFIEDEQDDI---SIEIAMQYNDGFASNLYSYANNIHTYE 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTHESG +  LTR I  YA      +    ++  DD+      I+SV   +P+F GQTK
Sbjct: 170 GGTHESGFKTGLTRVINDYARKNNMFKETDPNLTGDDVREGLTAIISVKHPDPQFEGQTK 229

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
           TKL + +A+   +    + F  +L +NP  A  ++E  +  S  R+  +K RE   RK A
Sbjct: 230 TKLGNSEARTVTDALFSEGFSKFLFENPNMAKTIVEKGLMASRARMAAKKARELTRRKNA 289

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADCS   A+ +EL+IVEGDSAGGSAK
Sbjct: 290 LEVSNLPGKLADCSSKDANISELYIVEGDSAGGSAK 325


>gi|220680540|dbj|BAH10759.1| DNA gyrase subunit B [Nocardia miyunensis]
          Length = 398

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 116/404 (28%), Positives = 192/404 (47%), Gaps = 32/404 (7%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L   +      +SQ++    P      + +   + GT I F  DP IF     F
Sbjct: 1   NALSTRLQAEIDYDGHHWSQEYKDAKPGKL--IQGESTKRTGTTIRFWADPNIFETTL-F 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK----------------------YGIPEK 260
           +   + +  Q  A+L+  +    + ++    +                          + 
Sbjct: 58  NFETVSRRLQEMAFLNKGLTITLTDERVTDSEVTEEVVSEHAEAPKHAEEAPPVEHKVKT 117

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
             +++PGGL+ +++     +  I + +     +        +E A+ W       + ++ 
Sbjct: 118 RTYHYPGGLEDFVKHINRTKQPIHNTVVAFTGKGTVH---ELEVAMQWNSGYSESVHTFA 174

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREP 377
           NTI T EGGTHE G R ALT  + KYA+  +  +    ++  DD+      I+SV + EP
Sbjct: 175 NTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDDIREGLAAIVSVKVGEP 234

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F GQTKTKL + + +  V+    +   H+   NP +A  ++   +  ++ R+  RK RE
Sbjct: 235 QFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVNKAVSSAQARVAARKARE 294

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
            V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LPLRGKI
Sbjct: 295 LVRRKSATDLGGLPGKLADCRSKDPTKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGKI 354

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 INVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYHKIVL 398


>gi|193788051|dbj|BAG50526.1| DNA gyrase subunit B [bacterium GMW-15]
          Length = 347

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 121/354 (34%), Positives = 189/354 (53%), Gaps = 15/354 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R N I  Q ++ G+P +PL          GT + F P  + F +   F+   L K  +  
Sbjct: 2   RDNKIHRQIYAHGVPQAPLAVTGDTEK-TGTMVRFWPSYETFTNVIEFEYEILAKRLREL 60

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V       ++  E       + F++ GG+K +++   +N++ I   IF   TEK
Sbjct: 61  SFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEK 113

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     I  + N I   +G TH +G R A+TR +  Y +      
Sbjct: 114 DG---FGVEVALQWNDGFQENIYCFTNNIPQRDGSTHLAGFRAAITRTLNAYMDKEGYSK 170

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +  + YL++N
Sbjct: 171 KAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLNEYLLEN 230

Query: 412 PIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   R+ R    RK A+    LPGKLADC +     +EL++VE
Sbjct: 231 PSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVE 290

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC  
Sbjct: 291 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 344


>gi|307343868|emb|CBJ19539.1| gyrase B subunit [Micromonospora sp. SR1]
          Length = 364

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 109/369 (29%), Positives = 188/369 (50%), Gaps = 9/369 (2%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V + +  +++ Q ++   P    +   +  ++ G+ ++F PDP +F     FD   + + 
Sbjct: 2   VEIHKSGSVWRQHYTNSKPSPLEK--GETTDRTGSAVSFWPDPDVFETV-DFDFQTIYRR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            Q  A+L+  ++     ++   E+ G   +  FY+ GG+  +++    ++S I   +   
Sbjct: 59  LQEMAFLNRALRIHLLDERVAEEEDGRQREVTFYYEGGIADFVRHLNASKSPIHKTVVEF 118

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
           + E++G    ++E A+ W E     + ++ NTI T EGGTHE G R ALT  + +Y    
Sbjct: 119 EAEEEG---MSLEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSVVNRYGTDK 175

Query: 350 QNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
           +  +    +  +D+      I+SV +  P+F GQTKTKL +   +  V+    D    + 
Sbjct: 176 KLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWF 235

Query: 409 VQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
            +NP EA  ++ +           ++ ++   RK+ +    +PGKLADC       +E+F
Sbjct: 236 DRNPAEAKMIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVF 295

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           IVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG      
Sbjct: 296 IVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGIHDD 355

Query: 528 YREEDLRYE 536
           +  E LRY 
Sbjct: 356 FDMEKLRYH 364


>gi|15551693|emb|CAC69420.1| DNA gyrase B subunit [Serratia grimesii]
          Length = 323

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 105/334 (31%), Positives = 176/334 (52%), Gaps = 15/334 (4%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG+SVVNALS++L + + R+  +  Q ++ G PL+PL+   +  +
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYAMGEPLAPLKVVGET-D 59

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             GT + F P  + F +   F+   L K  +  ++L+  V       +   E       +
Sbjct: 60  LTGTTVRFWPSYETFTNNTEFEYDILAKRLRELSFLNSGVSIRLKDKRTDKE-------D 112

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F++ GG+K +++   +N++ I   +F   T K       VE A+ W +     I  + N
Sbjct: 113 HFHYEGGIKAFVEYLNKNKTPIHPNVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTN 169

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I   +GGTH +G R A+TR +  Y +      K  IS   DD     + ++SV + +P+
Sbjct: 170 NIPQRDGGTHLAGFRTAMTRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPK 229

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQRE 437
           F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+        R+ +  
Sbjct: 230 FSSQTKDKLVSSEVKTAVETLMNEKLVDYLMENPGDAKIVVGKIIDAARAREAARKAREM 289

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
             RK A+    LPGKLADC +     +EL++VEG
Sbjct: 290 TRRKGALDLAGLPGKLADCQERDPALSELYLVEG 323


>gi|261488468|emb|CAU94909.1| DNA gyrase subunit B [Roseateles terrae]
          Length = 339

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 102/323 (31%), Positives = 169/323 (52%), Gaps = 27/323 (8%)

Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178
           + H   P +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV R+  
Sbjct: 1   DKHE--PKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKWLRLTVRREGK 58

Query: 179 IFSQKFSRGIP------------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAAR 226
           +   +F +G+P             SP++      +KRGT + F PD +IF     F    
Sbjct: 59  VHQLEFRKGVPQDRVIEVRDGFETSPMKVVGDT-DKRGTEVHFLPDTEIFTQNHEFHYDI 117

Query: 227 LLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSE 286
           L K  +  ++L+  VK   + ++   E         F + GG++ +++   + ++ +   
Sbjct: 118 LAKRLRELSFLNNGVKIRLADERNNKEDN-------FAYAGGVRGFVEFINKGKTTLHPN 170

Query: 287 IFTGKTEK--KGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRGIK 343
           IF  + +K         VE ++ W +  N  +  + N I   +GGTH +GLR A+TR I 
Sbjct: 171 IFHAQGDKMSDQNTNIGVEVSMQWNDGFNENVLCFTNNIPQRDGGTHLTGLRAAMTRVIN 230

Query: 344 KYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
           KY E  +   K  + +  DD+      ++SV + EP+F+ QTK KLVS + +  VE  + 
Sbjct: 231 KYIEDNELAKKAKVDVSGDDMREGLACVVSVKVPEPKFSSQTKDKLVSSEVRGPVEEIVA 290

Query: 402 DPFDHYLVQNPIEATKLLEWVIE 424
              + +L++NPI+A  +   +++
Sbjct: 291 AKLNDWLLENPIDAKIICGKIVD 313


>gi|171702716|dbj|BAG16326.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-50]
 gi|171702726|dbj|BAG16331.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-76]
 gi|171702744|dbj|BAG16340.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-95]
          Length = 356

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 129/360 (35%), Positives = 195/360 (54%), Gaps = 9/360 (2%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            I+ Q++ +G  L P+++       RGT +TF+PD  IF     +    L    +  ++L
Sbjct: 2   KIYEQEYEKGKSLYPVKQIGTTEK-RGTIVTFKPDATIFTQTLEYSYDTLAARLRELSFL 60

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +    +  + +AE    P  E F+   GLK +++    NR  I S + + + +K   
Sbjct: 61  NKGITITLTDKRHLAEDGSQP-VETFHSKEGLKEFIKFLDGNREPIISHVISMENDKGDI 119

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRA 354
               VE A+ +       I SY N I T EGGTH  G R+ LTR +KKYA+ +    K  
Sbjct: 120 P---VEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRMGLTRTLKKYADASGLLDKLK 176

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             I  DD       I+SV I+EP+F GQTKTKL + +    V  A+ +  ++YL +NP +
Sbjct: 177 FEIAGDDFREGLTAIISVKIQEPQFEGQTKTKLGNREVVSPVSQAVAEMLENYLEENPND 236

Query: 415 ATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  +++ VI  ++ R   +K RE+  RKT +    LPGKL+DCS+      E+F+VEGDS
Sbjct: 237 AKTIVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPAKCEIFLVEGDS 296

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGG+AKQ R+R  QA+LPLRGKILNV  A   K+  N++I ++  ALG    ++   + L
Sbjct: 297 AGGTAKQGRDRFFQAILPLRGKILNVEKAMQHKVFENEEIRNIFTALGVTVGTEEDSKAL 356


>gi|226452091|gb|ACO59225.1| topoisomerase IV subunit B [Vibrio vulnificus]
 gi|226452093|gb|ACO59226.1| topoisomerase IV subunit B [Vibrio vulnificus]
 gi|226452095|gb|ACO59227.1| topoisomerase IV subunit B [Vibrio vulnificus]
 gi|226452097|gb|ACO59228.1| topoisomerase IV subunit B [Vibrio vulnificus]
 gi|226452099|gb|ACO59229.1| topoisomerase IV subunit B [Vibrio vulnificus]
 gi|226452101|gb|ACO59230.1| topoisomerase IV subunit B [Vibrio vulnificus]
 gi|226452103|gb|ACO59231.1| topoisomerase IV subunit B [Vibrio vulnificus]
 gi|226452105|gb|ACO59232.1| topoisomerase IV subunit B [Vibrio vulnificus]
 gi|226452107|gb|ACO59233.1| topoisomerase IV subunit B [Vibrio vulnificus]
 gi|226452109|gb|ACO59234.1| topoisomerase IV subunit B [Vibrio vulnificus]
 gi|226452111|gb|ACO59235.1| topoisomerase IV subunit B [Vibrio vulnificus]
 gi|226452113|gb|ACO59236.1| topoisomerase IV subunit B [Vibrio vulnificus]
 gi|226452115|gb|ACO59237.1| topoisomerase IV subunit B [Vibrio vulnificus]
 gi|226452117|gb|ACO59238.1| topoisomerase IV subunit B [Vibrio vulnificus]
 gi|226452119|gb|ACO59239.1| topoisomerase IV subunit B [Vibrio vulnificus]
 gi|226452121|gb|ACO59240.1| topoisomerase IV subunit B [Vibrio vulnificus]
 gi|226452123|gb|ACO59241.1| topoisomerase IV subunit B [Vibrio vulnificus]
 gi|226452125|gb|ACO59242.1| topoisomerase IV subunit B [Vibrio vulnificus]
 gi|226452127|gb|ACO59243.1| topoisomerase IV subunit B [Vibrio vulnificus]
 gi|226452129|gb|ACO59244.1| topoisomerase IV subunit B [Vibrio vulnificus]
 gi|226452131|gb|ACO59245.1| topoisomerase IV subunit B [Vibrio vulnificus]
 gi|226452133|gb|ACO59246.1| topoisomerase IV subunit B [Vibrio vulnificus]
 gi|226452135|gb|ACO59247.1| topoisomerase IV subunit B [Vibrio vulnificus]
          Length = 169

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 79/172 (45%), Positives = 105/172 (61%), Gaps = 3/172 (1%)

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKL DCS      T+L    GDSAGGSAKQAR+R  QAV+PLRGKILN     ++++  
Sbjct: 1   PGKLTDCSVQDLARTDLLRG-GDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLA 59

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           +Q++ D+  ALG    S    E LRY K+ I+ DAD DG HIA+LL   F +    L+E 
Sbjct: 60  SQEVHDISVALGIDPDSDNL-EGLRYGKICILADADSDGLHIATLLCALFTRHFRALVEA 118

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621
            H+++  PPL+RI  G +  YA D+  K  +LE   +  + KI + RFKGLG
Sbjct: 119 GHIYVAMPPLYRIDCGKEVFYALDDAEKDGVLERLSQK-RAKINVQRFKGLG 169


>gi|118201784|gb|ABK79705.1| DNA gyrase subunit b [Oceanicola granulosus]
          Length = 357

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 120/366 (32%), Positives = 188/366 (51%), Gaps = 13/366 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L + V R       +F  G  +  L+       + GT + F      F +   +
Sbjct: 1   NALSVWLELRVWRNGKEHVARFEHGETVEHLKVVGDAHGRSGTEVRFLASTDTFSNL-DY 59

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L K  +  A+L+  V+     D+        P   E ++ GG+K +++    ++S 
Sbjct: 60  DFHTLEKRLRELAFLNSGVRIILEDDR-----PAEPLHVELFYEGGVKEFVKYLDRSKSA 114

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           +  E    +  +      TVE A+ W +   E+   + N I   +GGTH +G R ALTR 
Sbjct: 115 MLPEPIHVEGMRDDI---TVEVAMWWNDSYNEMVLPFTNNIPQRDGGTHMAGFRAALTRT 171

Query: 342 IKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + KYA  +   +   ++   DD+      +LSV + +P+F+ QTK KLVS + +  VE+ 
Sbjct: 172 VTKYATESGIAKREKVNFTGDDMREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVESL 231

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    +  +NP +A  ++  ++E ++ R   RK RE   RKTA+    L GKL DCS+
Sbjct: 232 VSEKLAEWFEENPGQAKMIVSKIVEAAQAREAARKARELTRRKTAMDVNYLAGKLKDCSE 291

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TE+F+VEGDSAGGSA+  R+R  QAVLPL+GKILNV  A  +++  +Q+I +LV 
Sbjct: 292 KDPTQTEVFLVEGDSAGGSAQTGRDRRTQAVLPLKGKILNVERARFDRMLGSQEIGNLVM 351

Query: 519 ALGCRT 524
           ALG   
Sbjct: 352 ALGTGI 357


>gi|118201804|gb|ABK79715.1| DNA gyrase subunit b [Roseovarius tolerans]
          Length = 357

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 118/366 (32%), Positives = 178/366 (48%), Gaps = 13/366 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+ L + + R       +F  G    PL         +GT + F    + F +   +
Sbjct: 1   NALSEWLELRIWRNGKEHVARFEGGFTTEPLRVVGDANGHKGTEVRFLASLETFSNL-EY 59

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  A+L+  V+     ++          + E ++ GG+K +++    +++ 
Sbjct: 60  SFETLEKRLRELAFLNSGVRIILRDER-----PAEHLESELFYEGGVKEFVKYLDRHKTP 114

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
              E      E+       +E A+ W +     +  + N I   +GGTH +G R ALTR 
Sbjct: 115 AMPEPIFITGERDEI---GIEVAMWWNDSYHETVLPFTNNIPQRDGGTHMAGFRGALTRT 171

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  YA+ T    K  +S   DD       +LSV + +P+F+ QTK KLVS + +  VE  
Sbjct: 172 INAYAQTTGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGL 231

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    +  +NP  A  ++  +IE +  R   RK RE   RK  +    L GKL DCS 
Sbjct: 232 MNEKLAEWFEENPQVAKVIVSKIIEAAHAREAARKARELTRRKNPMDVNFLAGKLKDCSS 291

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TELF+VEGDSAGGSA+  R+R  QAVLPLRGKILNV  A  +++  +Q+I +LV 
Sbjct: 292 KDPSKTELFLVEGDSAGGSAQTGRDRGTQAVLPLRGKILNVERARFDRMLGSQEIGNLVM 351

Query: 519 ALGCRT 524
           ALG   
Sbjct: 352 ALGTGI 357


>gi|15551715|emb|CAC69401.1| DNA gyrase B subunit [Raoultella terrigena]
          Length = 323

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 107/334 (32%), Positives = 175/334 (52%), Gaps = 15/334 (4%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG+SVVNALS +L + + R+  +  Q +  G+P  PL       +
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSQKLELLIRREGKVHQQTYVHGVPQHPLAVTGDT-D 59

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             GT++ F P  K F +   F+   L K  +  ++L+  V       ++  E       +
Sbjct: 60  ATGTQVRFWPSTKTFTNVIEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------D 112

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N
Sbjct: 113 HFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTN 169

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I   +GGTH +G R A+TR +  Y +      K  +    DD     + ++SV + +P+
Sbjct: 170 NIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVRPTGDDAREGLIAVVSVKVPDPK 229

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQRE 437
           F+ QTK KLVS + +  VE  + +  + YL++NP +A  ++  +I+        RR +  
Sbjct: 230 FSSQTKDKLVSSEVKTAVEQQMNELLNEYLLENPSDAKIVVGKIIDAARVREAARRAREM 289

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
             RK A+    LPGKLADC +     +EL++VEG
Sbjct: 290 TRRKGALDLAGLPGKLADCQERDPALSELYLVEG 323


>gi|15551677|emb|CAC69428.1| DNA gyrase B subunit [Serratia rubidaea]
          Length = 323

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 104/334 (31%), Positives = 173/334 (51%), Gaps = 15/334 (4%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG+SVVNALS++L + + R   +  Q +S G P +PL    +   
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGQVHEQTYSHGEPQAPLTVVGET-E 59

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           + GT + F P  + F +   F+   L K  +  ++L+  V       +   E       +
Sbjct: 60  QTGTTVRFWPSHQTFTNVVEFEYDILAKRLRELSFLNSGVSIRLKDKRTDKE-------D 112

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F++ GG+K +++   +N++ I   +F   T K       VE A+ W +     I  + N
Sbjct: 113 HFHYEGGIKAFVEYLNKNKTPIHPNVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTN 169

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+
Sbjct: 170 NIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPK 229

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQRE 437
           F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+        R+ +  
Sbjct: 230 FSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPGDAKIVVGKIIDAARAREAARKAREM 289

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
             RK A+    LPGKLADC +     +EL++VEG
Sbjct: 290 TRRKGALDLAGLPGKLADCQERDPALSELYLVEG 323


>gi|15551723|emb|CAC69394.1| DNA gyrase B subunit [Enterobacter cloacae]
          Length = 323

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 106/334 (31%), Positives = 172/334 (51%), Gaps = 15/334 (4%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL        
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYQHGVPEAPLAVTGDTEK 60

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             GT + F P  + F +   F+   L K  +  ++L+  V       ++  E       +
Sbjct: 61  -TGTMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE-------D 112

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N
Sbjct: 113 HFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTN 169

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I   + GTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+
Sbjct: 170 NIPQLDVGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPK 229

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQRE 437
           F+ QTK KLVS + +  VE  + +    YL +NP +A  ++  +I+        R+ +  
Sbjct: 230 FSSQTKDKLVSSEVKSAVEQQMNELLSDYLQENPNDAKIVVGKIIDAARAREAARKAREM 289

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
             RK A+    LPGKLADC +     +EL++VEG
Sbjct: 290 TRRKGALDLAGLPGKLADCQERDPALSELYLVEG 323


>gi|318066891|emb|CBY89157.1| DNA gyrase subunit B [Kushneria marisflavi]
          Length = 349

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 125/360 (34%), Positives = 191/360 (53%), Gaps = 16/360 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS++L +T+ R+N +  Q +  G+P SPL        + GT+I F+P  + F +
Sbjct: 1   VSVVNALSEQLKLTIWRKNQVHEQIYHHGVPQSPLAIVGDT-ERSGTQIHFKPSAETFAN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      +++  E       E F++ GGL+ ++     
Sbjct: 60  I-EFHYDILAKRLRELSFLNSGVAIRLLDERDGRE-------ELFHYEGGLRAFVDHLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           NR+ I+         + G     VE A+ W +     I  Y N I   +GGTH +G R A
Sbjct: 112 NRTTINPVFHFNAEREDGI---AVEVAMQWNDSYSENIFCYTNNIPQRDGGTHMAGFRGA 168

Query: 338 LTRGIKKYAE--LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E    Q K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRSLNSYIEAEELQKKSKVATSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  +      YL++NP +A  ++  +I+ +  R   RK      RK A+    LPGKLA
Sbjct: 229 VEQEMSRQLSDYLLENPADAKAIVNKMIDAARARDAARKAREMTRRKGALDIAGLPGKLA 288

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 289 DCQEKDPTRSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 348


>gi|308153132|dbj|BAJ22155.1| DNA gyrase subunit B [Nocardioides albus]
          Length = 425

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 135/426 (31%), Positives = 214/426 (50%), Gaps = 35/426 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN--K 202
              Y++SGGLHGVG SVVNALS  LH+ +  +  ++ Q+F+ G+P   L +  ++    +
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTNLHMEIKNRGRLWEQEFTSGVPDYDLREVCELEEGER 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-------EIAEKY 255
            GT I++    +IF     ++   +    +  A+L+  ++     ++       E  E  
Sbjct: 61  TGTTISWNASSEIFEST-EYNLETISSHFRETAFLNKGLRIELRDERPQASAIAEAVEDG 119

Query: 256 GIPEK------------------EEFYFPGGLKTYLQTKLENRSLISSEIFTG-KTEKKG 296
            + +                   + FY+  GL  Y+    + ++ +SS I    +T++K 
Sbjct: 120 TVEQDTDGADELHSSGNGERVLEQSFYYERGLADYVDHLNKRKTPVSSIIAFETETDEKA 179

Query: 297 THRGTVEWAIAWC--EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
            +  +VE A+ W     N  + ++ NT+ T  GGTHE G R ALT  I ++ E      K
Sbjct: 180 PNPMSVEIAMQWQASSYNESVHTFANTVNTPGGGTHEEGFRAALTTLINRWGEEWGQIKK 239

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
           +   +  DD+      I+SV I EP+F GQTK KL + + +  V+ A+ D    +L +NP
Sbjct: 240 KEDRLTGDDIREGLTAIISVKISEPQFEGQTKDKLGNTEVKGFVQGAVNDQLGAWLEENP 299

Query: 413 IEATKLLEWVIERSEERLRRRKQRE--VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
            E  +++   +  +  R+  RK R+   NRK       LPGKLADC        E+F+VE
Sbjct: 300 AEGKEIIRKSMAAASARIAARKARDLARNRKGIGGGGGLPGKLADCQSTNPEECEIFVVE 359

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530
           GDSAGGSAK  R+   QA+LP+RGKILNV  A  +K+  NQ++  ++ ALG      +  
Sbjct: 360 GDSAGGSAKSGRDPRIQAILPIRGKILNVEKARIDKVLANQEVQSIISALGTGVHDDFDI 419

Query: 531 EDLRYE 536
             LRY 
Sbjct: 420 NRLRYH 425


>gi|220680500|dbj|BAH10739.1| DNA gyrase subunit B [Nocardia asteroides]
          Length = 400

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 120/406 (29%), Positives = 196/406 (48%), Gaps = 34/406 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS +L   +      ++Q +    P      + +   + GT I F  DP+IF     +
Sbjct: 1   NALSSKLEAEIDNDGYHWTQVYKDAKPGKL--VQGEATQRTGTTIRFWADPEIFETTT-Y 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDK------------------EIAEKYGIPEKEE-- 262
           +   + +  Q  A+L+  +    +  +                  + AE+      E   
Sbjct: 58  NFETVSRRLQEMAFLNKGLTITLTDQRVSESDVIDEVVSDTAEAPKHAEEGVEKPVEHKV 117

Query: 263 ----FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
               +++PGGL  +++     +  I + +     +  G     +E A+ W       + +
Sbjct: 118 KTRTYHYPGGLVDFVRHINRTKQAIHNSVVGFTGKGTGH---ELEVAMQWNSGYSESVHT 174

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIR 375
           + NTI T EGGTHE G R ALT  + KYA+  +  +    ++  DD+      I+SV + 
Sbjct: 175 FANTINTHEGGTHEEGFRAALTTVVNKYAKEKKLLKEKDGNLTGDDIREGLAAIVSVKVG 234

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  +++  +  ++ R+  RK 
Sbjct: 235 EPQFEGQTKTKLGNTEVKSFVQRACNEHLTHWFEANPADAKTIVQKAVSSAQARVAARKA 294

Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE V RK+A     LPGKLADC        E++IVEGDSAGGSAK  R+   QA+LPLRG
Sbjct: 295 RELVRRKSATDLGGLPGKLADCRSKDPSKCEIYIVEGDSAGGSAKSGRDSMYQAILPLRG 354

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           KI+NV  A  +++  N ++  ++ A G     ++    LRY K+I+
Sbjct: 355 KIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYNKIIL 400


>gi|167508098|gb|ABZ81324.1| GyrB [Bowmanella pacifica]
          Length = 354

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 125/364 (34%), Positives = 196/364 (53%), Gaps = 15/364 (4%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS++L + + R   I  Q++  G+P +PL    +    +GT I F P P+ F D   F
Sbjct: 1   NALSEKLQLRIRRGGKIHEQEYQHGVPQAPLAPVGETEE-KGTAIRFWPSPQTFSDTV-F 58

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  ++L+  V      +++        + + F + GG+  ++Q   +N++ 
Sbjct: 59  HYDILAKRLRELSFLNSGVSIHLIDERD-------GKSDHFCYEGGINAFVQFLNQNKTP 111

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +  + F   TE++     +VE A+ W +     I  + N I   +GGTH +G R ALTR 
Sbjct: 112 VHQKAFHFSTERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRT 169

Query: 342 IKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +  + E      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE  
Sbjct: 170 LNNFMEAEGLNKKSKTNASGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKPAVETT 229

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458
           + +    +L++NP +A  +   +I+ +  R   RK R    RK A+    LPGKLADC +
Sbjct: 230 MGEKLQEFLLENPADAKIIAGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQE 289

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ 
Sbjct: 290 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 349

Query: 519 ALGC 522
           ALGC
Sbjct: 350 ALGC 353


>gi|220680582|dbj|BAH10780.1| DNA gyrase subunit B [Nocardia vermiculata]
          Length = 400

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 115/406 (28%), Positives = 197/406 (48%), Gaps = 34/406 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  + V +      ++Q++    P      +     + GT   F  DP +F     +
Sbjct: 1   NALSTRMVVDIDTDGYHWTQEYKDAKPGKL--VQGDPTKRTGTTQRFWADPNVFETTV-Y 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIA---------EKYGIPEKE------------ 261
           +   + +  Q  A+L+  +    + ++            EK   P+ +            
Sbjct: 58  NFETISRRLQEMAFLNKGLTITLTDERVTEAEVTSEVVSEKAEAPKTDEEVASEAAEPKV 117

Query: 262 ---EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
               +++PGGL+ +++     +  I + +    ++  G     +E A+ W       + +
Sbjct: 118 KTRTYHYPGGLEDFVRHINRTKQPIHNSVVGFTSKGTGH---ELEIAMQWNSGYSESVHT 174

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIR 375
           + NTI T EGGTHE G R ALT  + +YA+  +  +    ++  DD+      I+SV + 
Sbjct: 175 FANTINTHEGGTHEEGFRAALTTVVNRYAKEKKLLKEKDGNLTGDDIREGLAAIVSVKVS 234

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           EP+F GQTKTKL + + +  V+    +   H+   NP +A  +++  +  ++ R+  RK 
Sbjct: 235 EPQFEGQTKTKLGNTEVKSFVQRTCNEHLAHWFEANPADAKTIVQKAVSSAQARVAARKA 294

Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LPLRG
Sbjct: 295 RELVRRKSATDLGGLPGKLADCRSKDPAKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRG 354

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           KI+NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 KIINVEKARIDRVLKNNEVQAIITAFGTGIHDEFDISKLRYHKIVL 400


>gi|1360607|emb|CAA92320.1| GyrB [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 391

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 79/163 (48%), Positives = 113/163 (69%), Gaps = 1/163 (0%)

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 1   AGLPGKLADCQEXDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 60

Query: 507 IRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           + ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +
Sbjct: 61  MLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPE 120

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           ++E+ H+++  PPL+++ +G +  Y  D+    +        G
Sbjct: 121 IVERGHVYIAQPPLYKVKKGKQEQYIKDDXAMDQYQISIALDG 163



 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 319 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 374

Query: 657 DSINKLMGTKADERFKF 673
                LMG   + R  F
Sbjct: 375 QLFTTLMGDAVEPRRAF 391


>gi|198042668|gb|ACH81159.1| GyrB [Alteromonas sp. UST040801-002]
          Length = 327

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 106/336 (31%), Positives = 173/336 (51%), Gaps = 15/336 (4%)

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
            E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS  L + + R      Q++  G+P
Sbjct: 1   AEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSSRLKLRIRRGGKAHEQEYHHGVP 60

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            +PL       +K GT I F P    F D   +    L K  +  ++L+  V      ++
Sbjct: 61  QAPLAVTGDT-DKTGTMIRFWPSSDTFTDTL-YHYDILAKRLRELSFLNSGVSIRLKDER 118

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
           +  E       + F + GG+K +++   E ++ +  ++F   +E++      VE A+ W 
Sbjct: 119 DGKE-------DHFMYEGGIKAFVEYLNEKKTPVHQKVFHFSSEQED--GIAVEVAMQWN 169

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISA 366
           +     +  + N I   +GGTH +G R ALTR +  Y E      K   +   DD     
Sbjct: 170 DSFQENVFCFTNNIPQRDGGTHLAGFRGALTRTLNNYMEKEGLNKKAKTNASGDDAREGL 229

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-R 425
             ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +L++NP E+  +   +I+  
Sbjct: 230 TAVISVKVPDPKFSSQTKDKLVSSEVRPAVESAMNEKLAEFLLENPAESKIIAGKIIDAA 289

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIA 461
                 R+ +    RK A+    LPGKLADC +   
Sbjct: 290 RAREAARKAREMTRRKGALDLAGLPGKLADCQEKDP 325


>gi|300492620|gb|ADK23799.1| DNA gyrase subunit B [Alteromonas sp. P127]
          Length = 355

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 124/366 (33%), Positives = 193/366 (52%), Gaps = 15/366 (4%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L + + R      Q++  G+P +PL       +K GT I F P    F D   +
Sbjct: 1   NALSSRLKLRIRRGGKAHEQEYHHGVPQAPLAVTGDT-DKTGTMIRFWPSSDTFTDTL-Y 58

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  ++L+  V      +++  E       + F + GG+K +++   E ++ 
Sbjct: 59  HYDILAKRLRELSFLNSGVSIRLKDERDGKE-------DHFMYEGGIKAFVEYLNEKKTP 111

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +  ++F   +E++      VE A+ W +     +  + N I   +GGTH +G R ALTR 
Sbjct: 112 VHQKVFHFSSEQED--GIAVEVAMQWNDSFQENVFCFTNNIPQRDGGTHLAGFRGALTRT 169

Query: 342 IKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +  Y E      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE+A
Sbjct: 170 LNNYMEKEGLNKKAKTNASGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVRPAVESA 229

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458
           + +    +L++NP E+  +   +I+ +  R   RK R    RK A+    LPGKLADC +
Sbjct: 230 MNEKLAEFLLENPAESKIIAGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQE 289

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ 
Sbjct: 290 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 349

Query: 519 ALGCRT 524
           ALGC  
Sbjct: 350 ALGCGI 355


>gi|118201776|gb|ABK79701.1| DNA gyrase subunit b [Marinovum algicola]
          Length = 357

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 123/366 (33%), Positives = 186/366 (50%), Gaps = 13/366 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L + V R   +   KF  G     L        + GT + F      F +   +
Sbjct: 1   NALSVWLELRVWRNGKVHYAKFEHGETTEHLRVTGDAEGESGTEVRFLASTNTFSNL-DY 59

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L K  +  A+L+  VK     D+        P   E ++ GG+K +++    ++  
Sbjct: 60  DFHVLEKRLRELAFLNSGVKIILEDDR-----PAEPLHIELFYDGGVKEFVKYVDRHKHA 114

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +  E    + E+       VE A+ W +     +  + N I   +GGTH +G R ALTR 
Sbjct: 115 MMPEPIYVQGERDEI---GVEVAMWWNDSYHETVLPFTNNIPQRDGGTHLAGFRGALTRT 171

Query: 342 IKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I+KYA+ +   +   ++   DD       +LSV + +P+F+ QTK KLVS + +  VEN 
Sbjct: 172 IQKYAQESGIAKREKVNFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENL 231

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    +  +NP EA  ++  +IE +  R   RK RE   RK+A+    L GKL DCS+
Sbjct: 232 VGEKLSEWFEENPNEAKMIVSKIIEAAMAREAARKARELTRRKSAMDVNFLAGKLKDCSE 291

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TELF+VEGDSAGGSA+  R+R  QA+LPL+GKILNV  A  +++ ++Q+I +LV 
Sbjct: 292 KDPAKTELFLVEGDSAGGSAQTGRDRGTQAILPLKGKILNVERARFDRMLSSQEIGNLVM 351

Query: 519 ALGCRT 524
           ALG   
Sbjct: 352 ALGTGI 357


>gi|318066803|emb|CBY89113.1| DNA gyrase subunit B [Carnimonas nigrificans]
          Length = 349

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 127/360 (35%), Positives = 196/360 (54%), Gaps = 16/360 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS +L +T+ R   + +Q +S G+P  PLE       + GT+I F P P+ F +
Sbjct: 1   VSVVNALSSQLDLTIWRAGKVHTQTYSHGVPQKPLEVVGDT-ERSGTQIHFVPSPETFAN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V    + +++        + E F++ GGLK +++   +
Sbjct: 60  I-EFHYEVLAKRLRELSFLNSGVAIRLTDERD-------GKSELFHYEGGLKAFVEHLNK 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           NR+ I+         + G    TVE A+ W +     +  Y N I   +GGTH +G R +
Sbjct: 112 NRTTINPVFHFSLDREDGI---TVEVAMQWNDSYNENLLCYTNNIPQRDGGTHLAGFRAS 168

Query: 338 LTRGIKKYAE--LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E    Q K  ++   DD     V I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRTLNNYIEAEELQKKAKVTTSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  +   F  YL+++P EA  ++  +I+ +  R   RK      RK A+    LPGKLA
Sbjct: 229 VEQEMGKNFSEYLLEHPSEAKIIVNKMIDAARARDAARKAREMTRRKGALDIAGLPGKLA 288

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 289 DCQEKDPAKSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 348


>gi|318066857|emb|CBY89140.1| DNA gyrase subunit B [Halomonas magadiensis]
          Length = 349

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 128/360 (35%), Positives = 191/360 (53%), Gaps = 16/360 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +T+ RQ  +F Q +  G+P +PL    K     GTR+ FRP P  F +
Sbjct: 1   VSVVNALSEELRLTIWRQGEVFEQIYHHGVPQAPLGVVGKTEK-SGTRVHFRPSPATFAN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F++ GGLK ++    +
Sbjct: 60  I-EFHYDILAKRLRELSFLNSGVAIRLMDERSGKE-------ELFHYEGGLKAFVDHLNK 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N+++++         + G     VE A+ W +     I  Y N I   +GGTH +G R A
Sbjct: 112 NKTVLNPVFHFNAEREDGV---EVEVAMQWSDAFTENIFCYTNNIPQRDGGTHLAGFRAA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRTLNHYIEAENLLKKSKVNTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  +   F  YL++ P EA  ++  +I+ +  R   RK      RK A+    LPGKLA
Sbjct: 229 VEQEMGRLFADYLIEKPNEAKSIVNKMIDAARAREAARKARDMTRRKGALDIAGLPGKLA 288

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 289 DCQEKDPSQSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 348


>gi|171702728|dbj|BAG16332.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-80]
          Length = 356

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 127/360 (35%), Positives = 194/360 (53%), Gaps = 9/360 (2%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            ++ Q++ +G  L P+++       RGT +TF+PD  IF     +    L    +  ++L
Sbjct: 2   KVYQQEYEKGKSLYPVKQIGTTYK-RGTIVTFKPDATIFTHTLEYSYDTLAARLRELSFL 60

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +    +  + +A+    P  E F+   GLK +++    NR  I S + + + EK   
Sbjct: 61  NKGITITLTDKRHLADDGSQP-VETFHSKEGLKEFIKFLDGNREPIISHVISMENEK--- 116

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRA 354
               VE A+ +       I SY N I T EGGTH  G R+ LTR +KKYA+ +    K  
Sbjct: 117 GEIPVEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRMGLTRTLKKYADASGLLEKLK 176

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             I  DD       I+SV I+EP+F GQTKTKL + +    V  A+ +  ++YL +NP +
Sbjct: 177 FEIAGDDFREGLTAIISVKIQEPQFEGQTKTKLGNREVVSPVSQAVAEMLENYLEENPND 236

Query: 415 ATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  +++ VI  ++ R   +K RE+  RKT +    LPGKL+DCS+      E+++VEGDS
Sbjct: 237 AKTIVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPEKCEIYLVEGDS 296

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGG AKQ R+R  QA+LPLRGKILNV  A   K+  N++I ++  ALG    ++   + L
Sbjct: 297 AGGIAKQGRDRFFQAILPLRGKILNVEKAMQHKVFENEEIRNIYTALGVTVGTEEDSKAL 356


>gi|110624470|dbj|BAE98182.1| DNA gyrase B subunit [Shewanella glacialipiscicola]
 gi|110624473|dbj|BAE98183.1| DNA gyrase B subunit [Shewanella glacialipiscicola]
          Length = 365

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 127/376 (33%), Positives = 197/376 (52%), Gaps = 15/376 (3%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS +L +T+ R   ++ Q ++ G+P +P+ +        GT I F P    F +
Sbjct: 1   VSVVNALSKKLQMTIRRAGKVYEQFYTHGVPDAPIHEIGDATK-TGTEIRFWPSENTFSN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      +++        + E F + GG+  ++     
Sbjct: 60  I-EFHFEILAKRVRELSFLNSGVGIRLIDERDN-------KNELFKYEGGISAFVDYLNR 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ I+ ++F    E+      TVE A+ W +     I  + N I   +GGTH  G R A
Sbjct: 112 NKTPINKDVFHFIQERDD--GITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLVGFRSA 169

Query: 338 LTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K   S   DD       ++SV + +P+F+ QTK KLVS + +  
Sbjct: 170 LTRNLNSYMENEGYNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTA 229

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454
           VE  + +  + YL++NP +A  ++  +++ +  R   RK R    RK A+    LPGKLA
Sbjct: 230 VEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLA 289

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++ 
Sbjct: 290 DCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 349

Query: 515 DLVQALGCRTRSQYRE 530
            L+ ALGC        
Sbjct: 350 TLITALGCGIGRDEYN 365


>gi|209171379|gb|ACI42885.1| GyrB [Actinobaculum schaalii]
          Length = 402

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 120/404 (29%), Positives = 189/404 (46%), Gaps = 22/404 (5%)

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+SVVNALS  +   V R   ++   +  G+P   LE+ E+      T  TF  +P IF
Sbjct: 1   VGVSVVNALSTRMETIVKRDGYVWRIAYENGVPTRELERGEETTETG-TTQTFWANPDIF 59

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE---------------KYGIPEKE 261
                +D   L K     A+L+  ++     ++  A                +     + 
Sbjct: 60  ETT-DYDFETLRKRFHQMAFLNKNLRINLIDERRSATSEGDEVTGAEGESAAEVPAKREV 118

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYC 319
            + + GGL  Y++     +            E +    +  VE A+ W       + ++ 
Sbjct: 119 SYCYSGGLLDYVKFLNSMKKSDIINNDIIYFEAEDDEKQIEVEVAMQWTSAYSESVNTFA 178

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           NTI T EGG HE G R ALT  I KYA        +  ++  DD+      ++SV +  P
Sbjct: 179 NTINTTEGGMHEEGFRSALTSVINKYAREHGLLKDKDSNLSGDDVREGLTAVISVKLGNP 238

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F GQTKTKL + +A+  V+  +      +L  +P +A +++    +    R   RK RE
Sbjct: 239 QFEGQTKTKLGNTEARTFVQQQMYTQLSDWLDSHPADAKEIIRKGTQAFAARAAARKARE 298

Query: 438 VNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
             R+ + +    +PGKL DC+ N     E+FIVEGDSAGGSA   R+  +QA++P+RGKI
Sbjct: 299 ATRRKSVLESASMPGKLKDCTSNKPEECEIFIVEGDSAGGSAVNGRDPEHQAIMPIRGKI 358

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           LNV  A  ++  ++  I  L+ A G     ++  + LRY K+I 
Sbjct: 359 LNVEKARLDRALSSDTIQSLITAFGTGIGDEFDIDKLRYHKIIS 402


>gi|2196814|gb|AAB80824.1| DNA gyrase beta-subunit [Shewanella putrefaciens]
          Length = 419

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 129/418 (30%), Positives = 206/418 (49%), Gaps = 17/418 (4%)

Query: 131 EIILTTLHAGGK-FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189
           E+I+T   AG      +T     G H +   +VNALS +L +T+ R   ++ Q ++ G+P
Sbjct: 1   EVIMTVPRAGVNSKITTTDAEVDGSH-IRTLLVNALSKKLQMTIRRAGKVYEQFYTHGVP 59

Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
            +P+++        GT I F P    F D   F    L K  +  ++L+  V      ++
Sbjct: 60  DAPIKEIGDATK-TGTEIRFWPSEDTFSDV-EFHFEILAKRVRELSFLNSGVGIRLVDER 117

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
           +        + E F + GG+   +     N++ ++ ++F    E++     TVE A+ W 
Sbjct: 118 DN-------KNEFFKYEGGISASVNYLNRNKTPVNKDVFHFMQERED--GITVEVAMQWN 168

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISA 366
           +     I  + N I   +GGTH  G R ALTR +  Y E      K   S   DD     
Sbjct: 169 DGYQENIFCFTNNIPQRDGGTHLVGFRSALTRNLNSYMENEGYNKKGKTSATGDDAREGL 228

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             ++SV + +P+F+ QTK KLVS + +  VE  + +  + YL++NP +A  ++  +++ +
Sbjct: 229 TAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEKLNDYLLENPADAKLIVGKIVDAA 288

Query: 427 EERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
             R    K      RK A+    LPGKLADC +     +E++IVEGD AGGSAKQ  NR 
Sbjct: 289 RARKAAGKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDFAGGSAKQGSNRK 348

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTD 543
           NQA+LPL+GKILNV  A  EK+   Q++  ++ A+GC       +      ++    D
Sbjct: 349 NQAILPLKGKILNVEEARFEKMLFFQEVATVITAIGCGIGEDDHDRSASRGEIRSHHD 406


>gi|318066827|emb|CBY89125.1| DNA gyrase subunit B [Halomonas aquamarina]
 gi|318066829|emb|CBY89126.1| DNA gyrase subunit B [Halomonas axialensis]
 gi|318066861|emb|CBY89142.1| DNA gyrase subunit B [Halomonas meridiana]
          Length = 349

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 127/360 (35%), Positives = 190/360 (52%), Gaps = 16/360 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +T+ RQ  +F Q +  G+P +PL    K     GTR+ FRP P  F +
Sbjct: 1   VSVVNALSEELRLTIWRQGEVFEQIYHHGVPQAPLSVVGKTEK-SGTRVHFRPSPATFAN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F++ GGLK ++    +
Sbjct: 60  I-EFHYDILAKRLRELSFLNSGVAIRLMDERSGKE-------ELFHYEGGLKAFVDHLNK 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N+++++           G     VE A+ W +     I  Y N I   +GGTH +G R A
Sbjct: 112 NKTVLNPVFHFNAGRDDGV---EVEVAMQWSDAFTENIFCYTNNIPQRDGGTHLAGFRAA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRTLNHYIEAEGLLKKAKVNTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  +   F  YL++ P EA  ++  +++ +  R   RK      RK A+    LPGKLA
Sbjct: 229 VEQEMGRLFADYLIEKPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLA 288

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 289 DCQEKDPSQSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 348


>gi|220680574|dbj|BAH10776.1| DNA gyrase subunit B [Nocardia thailandica]
          Length = 400

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 116/406 (28%), Positives = 194/406 (47%), Gaps = 34/406 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS +L   +      ++Q +    P      + +   + GT I F  DP+IF     +
Sbjct: 1   NALSSKLEAEIDNDGYHWTQVYKDAKPGQL--IQGEPTKRTGTTIRFWADPEIFETTT-Y 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------------------------ 258
           +   + +  Q  A+L+  +    +  +                                 
Sbjct: 58  NFETVSRRLQEMAFLNKGLTITLTDQRVSENDVTDEVVSETAEAPKHAEEGAEAPAEPKV 117

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +   +++PGGL  +++     ++ I + +     +  G     +E A+ W       + +
Sbjct: 118 KTRTYHYPGGLVDFVRHINRTKTPIHNSVVGFTGKGTGH---ELEVAMQWNSGYSESVHT 174

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIR 375
           + NTI T EGGTHE G R ALT  + KYA+  +  +    ++  DD+      I+SV + 
Sbjct: 175 FANTINTHEGGTHEEGFRAALTTVVNKYAKEKKLLKEKDGNLTGDDIREGLAAIVSVKVG 234

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  +++  +  ++ R+  RK 
Sbjct: 235 EPQFEGQTKTKLGNTEVKSFVQRACNEHLTHWFEANPADAKTIVQKAVSSAQARVAARKA 294

Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LPLRG
Sbjct: 295 RELVRRKSATDLGGLPGKLADCRSKEPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRG 354

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           KI+NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 KIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYHKIVL 400


>gi|148762397|dbj|BAF63900.1| DNA gyrase subunit B [Halobacillus sp. S19-3]
          Length = 325

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 119/336 (35%), Positives = 176/336 (52%), Gaps = 15/336 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG SVVNALS +L V V R   I  Q + RG+P   L+   +  +K GTRI
Sbjct: 1   YKVYGGLHGVGASVVNALSTKLEVFVHRDGEIHYQSYKRGVPEEDLKVIGET-DKTGTRI 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F PD +IF +   +    L    +  A+L+  +       +   +        ++Y+ G
Sbjct: 60  HFIPDDEIFKETQEYKFEILANRLRELAFLNKGLTITIEDKRTDED------PVDYYYEG 113

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+ +Y++     R  I  + F  + E+      ++E A+ + +     I SY N I T E
Sbjct: 114 GILSYVEHMNRTREAIH-DAFFIEGEQD---EISIEIAMQYNDGFASNIYSYANNIHTYE 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTHESG +  LT  I  YA      +    ++  DD+      I+S+   +P+F GQTK
Sbjct: 170 GGTHESGFKTGLTHVINDYARKNNMFKETDPNLTGDDVREGLTAIISIKHPDPQFEGQTK 229

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
           TKL + +A+   +    + F  +L +NP  A  ++E  +  S  R+  +K RE   RK A
Sbjct: 230 TKLGNSEARTVTDALFSESFSKFLFENPTMAKTIVEKGLMASRARMAAKKARELTRRKNA 289

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADCS   A+ +EL+IVEGDSAGGSAK
Sbjct: 290 LEVSNLPGKLADCSSKDANISELYIVEGDSAGGSAK 325


>gi|153831459|ref|ZP_01984126.1| DNA gyrase subunit B [Vibrio cholerae 623-39]
 gi|148873059|gb|EDL71194.1| DNA gyrase subunit B [Vibrio cholerae 623-39]
          Length = 354

 Score =  177 bits (448), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 129/364 (35%), Positives = 197/364 (54%), Gaps = 15/364 (4%)

Query: 188 IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247
           +P +PL        + GT + F P  + F +   F    L K  +  ++L+  V    + 
Sbjct: 1   MPQAPLAVVGDT-ERTGTTVRFWPSAQTFTNI-EFHYDILAKRLRELSFLNSGVSIKLTD 58

Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307
           ++E  +K      + F + GG++ ++     N++ I  ++F    E++     +VE A+ 
Sbjct: 59  EREEDKK------DHFMYEGGIQAFVTHLNRNKTPIHEKVFHFNQERED--GISVEVAMQ 110

Query: 308 WCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMI 364
           W +     I  + N I   +GGTH +G R ALTR +  Y +      K   +   DD   
Sbjct: 111 WNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDARE 170

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
               ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +L +NP EA  +   +I+
Sbjct: 171 GLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLADFLAENPSEAKNVCSKIID 230

Query: 425 RSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483
            +  R   RK R    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RN
Sbjct: 231 AARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRN 290

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMT 542
           R NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMT
Sbjct: 291 RKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMT 350

Query: 543 DADV 546
           DADV
Sbjct: 351 DADV 354


>gi|190148870|gb|ACE63410.1| DNA gyrase B subunit [Pseudonocardia zijingensis]
          Length = 378

 Score =  177 bits (448), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 112/384 (29%), Positives = 190/384 (49%), Gaps = 20/384 (5%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LS  L V +  +  ++ Q ++  +P    +   +   + GT +TF  DP IF     ++ 
Sbjct: 1   LSTALDVEIHTEGKVWRQHYAHSVPGPLRK--GEDTTRTGTSVTFWADPDIFETTT-YNI 57

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP----------EKEEFYFPGGLKTYLQ 274
             + +  Q  A+L+  +      ++                   ++  F +P GL+ ++ 
Sbjct: 58  ETIRRRLQEMAFLNKGLTIVLRDERNGHPADEEEPDAEGYVAKVKEYTFCYPNGLEDFVA 117

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              + +  I  ++ +   E +      VE A+ W       + ++ NTI T EGGTHE G
Sbjct: 118 YLNKAKDPIHKKLISYSAESEDH---AVEVAMQWNSGYTESVYTFANTINTHEGGTHEEG 174

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALT  + +YA   +    +  ++  DD+      I+SV ++EP+F GQTKTKL + +
Sbjct: 175 FRSALTTTVNRYARDKKLLKDKDPALSGDDIREGLAAIVSVKVKEPQFEGQTKTKLGNTE 234

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450
            +  V+    +    +  +NP EA  ++   ++ ++ R+  RK RE V RK+A     LP
Sbjct: 235 VKSFVQRVSNEWLADWFERNPTEAKTIVNKAVQSAQARIAARKARELVRRKSAGDIGGLP 294

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GKLADC       +E++IVEGDSAGGSAK  R+   QA+LP+RGKI+NV  A  +++  N
Sbjct: 295 GKLADCRSTDPAKSEVYIVEGDSAGGSAKSGRDSMYQAILPIRGKIINVEKARIDRVLKN 354

Query: 511 QQIMDLVQALGCRTRSQYREEDLR 534
            ++  ++ ALG     ++    LR
Sbjct: 355 TEVQSIITALGTGIHDEFDLSKLR 378


>gi|171702730|dbj|BAG16333.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-81]
          Length = 356

 Score =  177 bits (448), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 128/360 (35%), Positives = 195/360 (54%), Gaps = 9/360 (2%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            ++ Q++ +G  L P+ +     +KRGT +TF+PD  IF     +    L    +  ++L
Sbjct: 2   KVYQQEYEKGKSLYPVNQIG-TTDKRGTIVTFKPDATIFTHTLEYSYDTLAARLRELSFL 60

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +    +  + +A+    P  E F+   GLK +++    NR  I S + + + EK   
Sbjct: 61  NKGITITLTDKRHLADDGSQP-VETFHSKEGLKEFIKFLDGNREPIISHVISMENEK--- 116

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRA 354
               VE A+ +       I SY N I T EGGTH  G R+ LTR +KKYA+ +    K  
Sbjct: 117 GEIPVEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRMGLTRTLKKYADASGLLEKLK 176

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             I  DD       I+SV I+EP+F GQTKTKL + +    V  A+ +  ++YL +NP +
Sbjct: 177 FEIAGDDFREGLTAIISVKIQEPQFEGQTKTKLGNREVVSPVSQAVAEMLENYLEENPND 236

Query: 415 ATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  +++ VI  ++ R   +K RE+  RKT +    LPGKL+DCS+      E+++VEGDS
Sbjct: 237 AKTIVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSEQDPEKCEIYLVEGDS 296

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGG AKQ R+R  QA+LPLRGKILNV  A   K+  N++I ++  ALG    ++   + L
Sbjct: 297 AGGIAKQGRDRFFQAILPLRGKILNVEKAMQHKVFENEEIRNIFTALGVTVGTEEDSKAL 356


>gi|15551675|emb|CAC69414.1| DNA gyrase B subunit [Salmonella enterica]
          Length = 323

 Score =  177 bits (448), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 109/334 (32%), Positives = 173/334 (51%), Gaps = 15/334 (4%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG+SVVNALS +L + + R   I  Q +  G+P +PL       +
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-D 59

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           K GT + F P  + F +   F+   L K  +  ++L+  V       ++  E       +
Sbjct: 60  KTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------D 112

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F++ GG+K   +   +N++ I   IF   TEK G     VE A+ W +     I  + N
Sbjct: 113 HFHYEGGIKASAEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTN 169

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+
Sbjct: 170 NIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPK 229

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQRE 437
           F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+        RR +  
Sbjct: 230 FSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREM 289

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
             RK A+    LPGKLADC +     +EL++VEG
Sbjct: 290 TRRKGALDLAGLPGKLADCQERDPALSELYLVEG 323


>gi|71833798|emb|CAI94338.1| gyrase B [Helicobacter salomonis]
          Length = 365

 Score =  177 bits (448), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 138/373 (36%), Positives = 210/373 (56%), Gaps = 17/373 (4%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS +L +T+ R+  I+ Q+F +GI  +PLE     +  RGT I F PD
Sbjct: 1   GLHGVGVSVVNALSIKLIMTIYREGQIYRQEFEKGIATTPLEVVGTTKK-RGTTIEFFPD 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P+I      FD+A L +  Q  AYL+ ++   +               E +++  GLK +
Sbjct: 60  PQIMEVI-AFDSAVLKRRFQEMAYLNNKITLEFHDQ-------PAQVHESYHYQDGLKQF 111

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHE 331
           +      ++ + SEI     + +G     VE A+A+ E   E   S+ N I T EGGTHE
Sbjct: 112 IV--DSQKTPLISEIIAFNAQVEG---MEVEVALAYNESYEEQTFSFVNNIRTTEGGTHE 166

Query: 332 SGLRVALTRGIKKYAELTQNKRA-ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           SG ++ L++ I  Y + + + R   S++ +D+      I+S+ + +P+F GQTK+KL S 
Sbjct: 167 SGFKMGLSKAILNYIQESGSSRESASVVQEDVREGLSAIISLKLLDPQFEGQTKSKLGSS 226

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
             +  V   + +    Y  +NP  A  +++ V+  +  R   +K RE   +K ++    L
Sbjct: 227 FVRPIVAKLVYEKVAKYFEENPSIAKAIVQKVLLAARGREAAKKAREITRKKDSLSVGTL 286

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC       +EL++VEGDSAGGSAKQ R+R+ QA+LPLRGKILNV  A   KI  
Sbjct: 287 PGKLADCQSKDPRESELYLVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKAHLGKILK 346

Query: 510 NQQIMDLVQALGC 522
           +++I +++ A GC
Sbjct: 347 SEEIKNMITAFGC 359


>gi|118201800|gb|ABK79713.1| DNA gyrase subunit b [Roseobacter litoralis]
          Length = 356

 Score =  177 bits (448), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 120/366 (32%), Positives = 184/366 (50%), Gaps = 14/366 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALSD L + + R+      +F  G  +  L+      ++ GT + F      F +   +
Sbjct: 1   NALSDWLELRIWREGKEHVARFEGGFTVDHLKVVGDT-DRTGTEVRFMASTDTFSNL-EY 58

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  A+L+  V+     ++   E          ++ GG+K +++    ++S 
Sbjct: 59  SFETLEKRLRELAFLNSGVRIILIDERPAEELRSE-----LFYEGGVKEFVKYLDRSKSS 113

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           +  E      EK       VE A+ W +   E    + N I   +GGTH +G R ALTR 
Sbjct: 114 VMPEPIFITGEKDDI---GVEVAMWWNDSYHENVLPFTNNIPQRDGGTHMAGFRGALTRT 170

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  YA+ +    K  +S   DD       +LSV + +P+F+ QTK KLVS + +  VE  
Sbjct: 171 INNYAQSSGIARKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGL 230

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    +  +NP EA  ++  +IE +  R   RK R+   RKTA+    L GKL DCS+
Sbjct: 231 VNEKLAEWFEENPSEAKIVVGKIIEAAHAREAARKARDLTRRKTAMDVNFLAGKLKDCSE 290

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TE+F+VEGDSAGGSA+  R+R  QA+LPL+GKILNV  A  +++  +Q+I +LV 
Sbjct: 291 KDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVM 350

Query: 519 ALGCRT 524
           ALG   
Sbjct: 351 ALGTGI 356


>gi|118201798|gb|ABK79712.1| DNA gyrase subunit b [Roseobacter denitrificans]
          Length = 356

 Score =  177 bits (448), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 121/366 (33%), Positives = 186/366 (50%), Gaps = 14/366 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALSD L + + R+      +F  G     LE      ++ GT + F    + F +   +
Sbjct: 1   NALSDWLELRIWREGKEHVARFEGGFTTRHLEVVGDT-DRTGTEVRFMASTETFSNL-DY 58

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  A+L+  V+     ++   E      + + ++ GG+K +++    ++S 
Sbjct: 59  SFETLEKRLRELAFLNSGVRIILIDERPAEE-----LRSDLFYEGGVKEFVKYLDRSKSS 113

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           +  E      EK       VE A+ W +   E    + N I   +GGTH +G R ALTR 
Sbjct: 114 VMPEPIFITGEKDDI---GVEVAMWWNDSYHENVLPFTNNIPQRDGGTHMAGFRGALTRT 170

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  YA+ +    K  +S   DD       +LSV + +P+F+ QTK KLVS + +  VE  
Sbjct: 171 INNYAQSSGIARKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGL 230

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    +  +NP EA  ++  +IE +  R   RK R+   RKTA+    L GKL DCS+
Sbjct: 231 VNEKLAEWFEENPAEAKIVVGKIIEAAHAREAARKARDLTRRKTAMDVNFLAGKLKDCSE 290

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TE+F+VEGDSAGGSA+  R+R  QA+LPL+GKILNV  A  +++  +Q+I +LV 
Sbjct: 291 KDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVM 350

Query: 519 ALGCRT 524
           ALG   
Sbjct: 351 ALGTGI 356


>gi|118201820|gb|ABK79723.1| DNA gyrase subunit b [Sulfitobacter delicatus]
          Length = 356

 Score =  177 bits (448), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 118/366 (32%), Positives = 191/366 (52%), Gaps = 14/366 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALSD L + + R+      +F  G     LE   +  ++ GT + F      F ++  +
Sbjct: 1   NALSDWLELRIWREGKEHIARFEGGFTTKHLEVLGET-DRTGTEVRFMASTDTFSNR-EY 58

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  A+L+  V+   + ++        P + E Y+ GG+K +++    +++ 
Sbjct: 59  SFETLEKRLRELAFLNSGVRIILTDER-----PVEPLRTELYYDGGVKEFVKYLDRHKTA 113

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           +  E      E+       +E A+ W +   E    + N I   +GGTH +G R ALTR 
Sbjct: 114 VMPEPIFITGERDDI---GIEVAMWWNDSYHENVLPFTNNIPQRDGGTHMAGFRGALTRT 170

Query: 342 IKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  YA+ +   +   I+   DD       +LSV + +P+F+ QTK KLVS + +  VE+ 
Sbjct: 171 INGYAQSSGIAKREKINFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVESL 230

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    +  +NP EA +++  ++E ++ R   RK RE   RK+A+    L GKL DCS+
Sbjct: 231 VNEKLAEWFEENPNEAKQIVGKIVEAAQAREAARKARELTRRKSAMDVNFLAGKLKDCSE 290

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TE+F+VEGDSAGGSA+  R+R  QA+LPL+GKILNV  A  +++  +Q+I +LV 
Sbjct: 291 KDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVM 350

Query: 519 ALGCRT 524
           ALG   
Sbjct: 351 ALGTGI 356


>gi|118201794|gb|ABK79710.1| DNA gyrase subunit b [Roseivivax halodurans]
          Length = 357

 Score =  177 bits (448), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 124/366 (33%), Positives = 186/366 (50%), Gaps = 13/366 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALSD L + + R       +F RG     LE        +GT + F      F +   +
Sbjct: 1   NALSDWLELRIWRNGKEHLARFERGDTAKHLEVVGDAEGMQGTEVRFLASTDTFSNL-DY 59

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L K  +  A+L+  V+     ++        P   E ++ GG+K +++    ++  
Sbjct: 60  DFHTLEKRLRELAFLNSGVRILLEDER-----PAEPLSVELFYEGGVKEFVKYLDRSKHP 114

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +  E      E+ G    +VE A+ W +     +  + N I   +GGTH +G R ALTR 
Sbjct: 115 MMPEPIYITGERDGI---SVEIAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRT 171

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I +YA  +    K  +S   DD       +LSV + +P+F+ QTK KLVS + +  VE+ 
Sbjct: 172 ITRYATDSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVESM 231

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    +  +NP EA  ++  ++E +  R   RK RE   RKTA+    L GKL DCS+
Sbjct: 232 MNEKLSEWFEENPNEARTIVGKIVEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSE 291

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TELFIVEGDSAGGSA+  R+R  QA+LPL+GKILNV  A  +++  +Q+I +LV 
Sbjct: 292 KDPSKTELFIVEGDSAGGSAQTGRDRGTQAILPLKGKILNVERARFDRMLGSQEIGNLVM 351

Query: 519 ALGCRT 524
           ALG   
Sbjct: 352 ALGTGI 357


>gi|197295769|gb|ACH58594.1| gyrase subunit B [Methylobacterium hispanicum]
          Length = 384

 Score =  177 bits (448), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 134/391 (34%), Positives = 201/391 (51%), Gaps = 21/391 (5%)

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  L + + R +   + +F  G   +PL+       +RGT +TF P  + F     
Sbjct: 1   VNALSVWLKLRIWRNDQEHAMEFGHGEAKAPLKVVGPGNGRRGTEVTFLPSTETFT-MVE 59

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD A L K  +  A+L+  V+   +  +   +K      EE Y+ GG++ +++    +R 
Sbjct: 60  FDYATLEKRLRELAFLNSGVRIVLTDARHAEKKR-----EELYYDGGIEAFVRYLDRSRK 114

Query: 282 LIS--SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
            I   S+    ++E+ G     VE A  W +     +  + N I   +GGTH +G R AL
Sbjct: 115 PIEGMSKPVVVRSERDGI---RVEVAFWWNDSFNETVLPFTNNIPQRDGGTHMAGFRAAL 171

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR I  YAE +    +  +S+  +D       ++SV + +P+F+ QTK KLVS + +  V
Sbjct: 172 TRQITGYAESSGVAKREKVSLTGEDCREGLTAVISVQVPDPKFSSQTKDKLVSSEVRPAV 231

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLAD 455
           EN L +    +L +NP +A  L+  V+  +  R   RK RE   RK A+    LPGKLAD
Sbjct: 232 ENVLNEGLSTWLEENPSQAKALMGKVVLAASAREAARKARETVTRKGALDIASLPGKLAD 291

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C +      E+ +VEGDSAGGSAKQ R+R+ QAVLPLRGKILNV    ++++ ++ +I  
Sbjct: 292 CQERDPTKCEILLVEGDSAGGSAKQGRDRAFQAVLPLRGKILNVERVRADRMLSSAEIGT 351

Query: 516 LVQALGCRTRSQY------REEDLRYEKVII 540
           L+ ALG                 LRY  V I
Sbjct: 352 LITALGAGIGRSSTDXEGXNPXKLRYHXVXI 382


>gi|307592564|gb|ADN65370.1| DNA gyrase subunit B [Sphingobacterium anhuiense]
          Length = 236

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 93/231 (40%), Positives = 140/231 (60%), Gaps = 6/231 (2%)

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTA 443
           TKL + +    V+ A+ +  + YL +NP EA  +++ V I        R+ +  V RKT 
Sbjct: 1   TKLGNSEVMGAVDVAVGEILNIYLEENPREAKAIVQKVVIAAQARAAARKARDLVQRKTV 60

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADC  N     E++ VEGDSAGG+AK  R+R  QA++PLRGKILNV  A 
Sbjct: 61  MGGSGLPGKLADCQDNDPTKCEIYFVEGDSAGGTAKSGRDRKYQAIMPLRGKILNVEKAM 120

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASLLLTF 558
             KI  N++I ++  ALG    +         E LRY ++IIMTDADVDG+HI +L+LTF
Sbjct: 121 EHKIYENEEIKNMFTALGVSLGTPDDPKALNLEKLRYHRIIIMTDADVDGSHITTLILTF 180

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK 609
           +++ M +LIE+ ++++ +PPL+ + +G    YA  E+ +   +++ K  GK
Sbjct: 181 YFRYMKELIEKGYIYIATPPLYLVKKGKDHQYAWTEDQRLNAIQQMKGGGK 231


>gi|261488474|emb|CAU94912.1| DNA gyrase subunit B [Aquabacterium commune]
          Length = 341

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 100/321 (31%), Positives = 163/321 (50%), Gaps = 25/321 (7%)

Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178
           + H   P +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VN LS  L +TV R   
Sbjct: 1   DKHE--PKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNGLSKWLRLTVRRDGK 58

Query: 179 IFSQKFSRGIPL-----------SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARL 227
               +F +G+P            +   +     +KRGT + F PD +IF +   +    L
Sbjct: 59  THFIEFKQGVPQDRVIEIRDGVETSPMRITGDTDKRGTEVHFLPDVEIFKENNEYHYDIL 118

Query: 228 LKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEI 287
            K  +  ++L+  VK     ++   E         F + GG+K +++   + ++ ++  I
Sbjct: 119 AKRLRELSFLNNGVKIRLIDERNNKEDN-------FAYAGGVKGFVEFINKGKATLNPNI 171

Query: 288 FTGKTEK--KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKK 344
           F  + +K         VE A+ W E     +  + N I   +GGTH +GLR A+TR I K
Sbjct: 172 FHAQGDKLSDQGTNVGVEVAMQWNESYNESVLCFTNNIPQRDGGTHLTGLRAAMTRVINK 231

Query: 345 YAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRD 402
           Y E  +   K  + +  DD+      ++SV + EP+F+ QTK KLVS + +  VE+ +  
Sbjct: 232 YIEDNELAKKAKVEVAGDDMREGLACVVSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVSR 291

Query: 403 PFDHYLVQNPIEATKLLEWVI 423
               +L++NPI+A  +   ++
Sbjct: 292 LLTDWLLENPIDAKIICGKIV 312


>gi|189182408|gb|ACD81923.1| DNA gyrase subunit beta [Shewanella livingstonensis]
          Length = 336

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 119/347 (34%), Positives = 185/347 (53%), Gaps = 15/347 (4%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD+++Y++SGGLHGVG+SVVNALS +L +T+ R   I+ Q ++ GIP +P+++     
Sbjct: 1   GKFDDNSYKVSGGLHGVGVSVVNALSKKLQLTIRRAGKIYEQFYTHGIPDAPIKEIGDSV 60

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
              GT + F P    F D   F    L K  +  ++L+  V      + E  +       
Sbjct: 61  K-TGTELRFWPSSDTFTD-VEFHFEILAKRVRELSFLNSGVAIRLVDEIENKD------- 111

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
           E F + GG+  ++     N++ I+ ++F    E+      TVE A+ W +     I  + 
Sbjct: 112 EFFKYEGGISAFVDYLNRNKTPINKDVFHFSQERDD--GITVEVAMQWNDGYQENIYCFT 169

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH +G R ALTR +  Y E      K   +   DD       ++SV + +P
Sbjct: 170 NNIPQRDGGTHLAGFRGALTRNLNNYMEREGYNKKGKTNATGDDAREGLTAVISVKVPDP 229

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EERLRRRKQR 436
           +F+ QTK KLVS + +  VE  + +  + YL++NP +A  ++  +++ S      R+ + 
Sbjct: 230 KFSSQTKDKLVSSEVKSAVEQTMGEQLNDYLLENPADAKLIVGKIVDASRAREAARKARE 289

Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483
              RK A+    LPGKLADC +     +E++IVEGDSAGGSAKQ RN
Sbjct: 290 MTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRN 336


>gi|261488464|emb|CAU94907.1| DNA gyrase subunit B [Roseateles depolymerans]
 gi|261488466|emb|CAU94908.1| DNA gyrase subunit B [Roseateles depolymerans]
          Length = 336

 Score =  176 bits (447), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 102/323 (31%), Positives = 170/323 (52%), Gaps = 27/323 (8%)

Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178
           + H   P +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV R+  
Sbjct: 1   DKHE--PKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKWLRLTVRREGK 58

Query: 179 IFSQKFSRGIP------------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAAR 226
           +   +F +G+P             SP++   +  +KRGT + F PD +IF     F    
Sbjct: 59  VHQLEFRKGVPQDRVIEVRDGFETSPMKIVGET-DKRGTEVHFLPDTEIFTQNHEFHYDI 117

Query: 227 LLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSE 286
           L K  +  ++L+  VK   + ++   E         F + GG++ +++   + ++ +   
Sbjct: 118 LAKRLRELSFLNNGVKIRLADERNNKEDN-------FAYSGGVRGFVEFINKGKTTLHPN 170

Query: 287 IFTGKTEK--KGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRGIK 343
           IF  + +K         VE ++ W +  N  +  + N I   +GGTH +GLR A+TR I 
Sbjct: 171 IFHAQGDKLSDQGTNIGVEVSMQWNDGFNESVLCFTNNIPQRDGGTHLTGLRAAMTRVIN 230

Query: 344 KYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
           KY E  +   K  + +  DD+      ++SV + EP+F+ QTK KLVS + +  VE  + 
Sbjct: 231 KYIEDNELAKKAKVDVSGDDMREGLACVVSVKVPEPKFSSQTKDKLVSSEVRGPVEEIVA 290

Query: 402 DPFDHYLVQNPIEATKLLEWVIE 424
              + +L++NPI+A  +   +++
Sbjct: 291 AKLNDWLLENPIDAKIICGKIVD 313


>gi|161339286|gb|ABX64394.1| GyrB [Gordonia amicalis]
          Length = 393

 Score =  176 bits (447), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 124/398 (31%), Positives = 195/398 (48%), Gaps = 38/398 (9%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVGISVVNALS ++ + +AR    ++Q +S   P +   ++     K GT + F PDP+
Sbjct: 1   HGVGISVVNALSTKVELEIARDGHNWAQTYSYAKPGAL--EQGDATRKTGTTVRFWPDPE 58

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK------------------------- 249
           IF +   F+A  + +  Q  A+L+  +    +  +                         
Sbjct: 59  IFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEAPGDANGDEDAPATDVAEVV 118

Query: 250 ----EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
               E A+    P+   +++P GL  Y++     +  I + +     + +G     VE A
Sbjct: 119 LTETEKAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGFSAKGEGH---EVEIA 175

Query: 306 IAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDL 362
           + W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++   +  DD+
Sbjct: 176 MQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLIKEKDGKLTGDDI 235

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
                 ++S  + +P+F GQTKTKL + + +  V+    +   H+   NP EA  +++  
Sbjct: 236 REGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEANPAEAKIIIKKA 295

Query: 423 IER-SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
            +        RR +  V RKTA     LPGKLADC  N     E++IVEGDSAGGSAK  
Sbjct: 296 ADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSAGGSAKSG 355

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
           R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A
Sbjct: 356 RDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITA 393


>gi|318066889|emb|CBY89156.1| DNA gyrase subunit B [Kushneria indalinina]
          Length = 349

 Score =  176 bits (447), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 123/360 (34%), Positives = 191/360 (53%), Gaps = 16/360 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS++L +T+ R+N +  Q +  G+P SPL        + GT+I F+P  + F +
Sbjct: 1   VSVVNALSEQLKLTIWRKNQVHEQIYKHGVPQSPLAVVGDT-ERSGTQIHFKPSSETFAN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      +++  E       E F++ GGL+ ++     
Sbjct: 60  I-EFHYDILAKRLRELSFLNSGVAIRLLDERDGRE-------ELFHYEGGLRAFVDHLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           NR+ ++         + G     VE A+ W +     I  Y N I   +GGTH +G R A
Sbjct: 112 NRTTVNPVFHFNAEREDGI---AVEVAMQWNDSYSENIFCYTNNIPQRDGGTHMAGFRGA 168

Query: 338 LTRGIKKYAE--LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E    Q K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRSLNSYIEAEELQKKSKVATSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  +      YL++NP +A  ++  +++ +  R   RK      RK A+    LPGKLA
Sbjct: 229 VEQEMSRQLSDYLLENPNDAKAIVNKMLDAARARDAARKAREMTRRKGALDIAGLPGKLA 288

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 289 DCQEKDPTRSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 348


>gi|324962684|gb|ADY62444.1| gyrase subunit B [Frankia sp. CpI1]
          Length = 360

 Score =  176 bits (447), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 105/330 (31%), Positives = 160/330 (48%), Gaps = 21/330 (6%)

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           SL  +  + VVDNGRGIPV  HP    +  +E++LTTLHAGGKFD  +Y +SGGLHGVG+
Sbjct: 1   SLLADAAVRVVDNGRGIPVGMHP-TEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHGVGV 59

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS +L V +     ++ Q +    P +PL  K     K GT +TF  DP IF   
Sbjct: 60  SVVNALSTKLDVEIQVDGHVWFQPYVATRPAAPL-VKTGTTKKTGTSVTFWADPTIFET- 117

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             +    L +  Q  A+L+  +      ++          +  + +  GL  ++      
Sbjct: 118 TEYKFETLSRRLQEMAFLNKGLSITLIDER-----PEERLEVTYKYSNGLVDFVAHLNAT 172

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
           +  I   + + +++  G      E A+ W       + ++ NTI T EGGTHE G R AL
Sbjct: 173 KDAIHRSVISLESKGVGI---EAELAMQWNAGYNESVYTFANTINTHEGGTHEEGFRAAL 229

Query: 339 TRGIKKYAELTQNKRAISI---------ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           T  +  YA+     + +             DD+      I+SV + +P+F GQTKTKL +
Sbjct: 230 TSAVNAYAKDQNLLKPVKAGAKSGDERLSGDDIREGLTAIISVKLAQPQFEGQTKTKLGN 289

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLL 419
            +A++ ++         +   N  EA  +L
Sbjct: 290 TEAKKFLQEMCYSALKDWFEVNRTEARAIL 319


>gi|148762419|dbj|BAF63911.1| DNA gyrase subunit B [Oceanobacillus picturae]
          Length = 324

 Score =  176 bits (447), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 121/336 (36%), Positives = 176/336 (52%), Gaps = 16/336 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG SVVNALS  L V V   N I    F +G+P   +E   +  +  GT  
Sbjct: 1   YKVCGGLHGVGASVVNALSTNLEVHVHLDNKIHYLGFKKGVPQGEIEVVGET-DVTGTTT 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F PDP+IF     +D   L +  +  A+L+  +       +   E         +++ G
Sbjct: 60  HFVPDPEIFDT-TEYDYDTLTQRLRELAFLNKGITITVEDKRTDEE------PVSYFYEG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K+Y++     + ++    F  + E +G    +VE AI + E     + S+ N I T E
Sbjct: 113 GIKSYVEFINRTKEVLHEP-FYAEGEDQGI---SVEVAIQYNEGFASSLYSFANNIHTYE 168

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GG+HESG R  LTR I  YA      R    ++  DD+      I+SV   +P+F GQTK
Sbjct: 169 GGSHESGFRTGLTRVINDYARKNNLYRENDPNLSGDDVREGMTAIVSVKHPDPQFEGQTK 228

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
           TKL + +A+   ++   + F  +L +NP  A  +++  +  S  RL  +K RE   RK+A
Sbjct: 229 TKLGNSEARTITDSVFSEMFSKFLYENPSVAKIIVDKGLMASRARLAAKKARELTRRKSA 288

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADCS   A  +EL+IVEGDSAGGSAK
Sbjct: 289 LEISNLPGKLADCSSKDAKISELYIVEGDSAGGSAK 324


>gi|118201818|gb|ABK79722.1| DNA gyrase subunit b [Sulfitobacter brevis]
          Length = 356

 Score =  176 bits (447), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 119/366 (32%), Positives = 184/366 (50%), Gaps = 14/366 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+ L + + R+      +F  G     L       ++ GT + F    + F +   +
Sbjct: 1   NALSEWLELRIWREGKEHIARFEGGFTKEHLSVVGPT-DRTGTEVRFMASTETFSNL-EY 58

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  A+L+  V+   + ++        P K E ++ GG+K +++    ++S 
Sbjct: 59  SFETLEKRLRELAFLNSGVRIILTDER-----PEEPLKSELFYEGGVKEFVKYLDRHKSS 113

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           +  E      EK       VE A+ W +   E    + N I   +GGTH +G R ALTR 
Sbjct: 114 VMPEPIFIVGEKDDI---GVEVAMWWNDSYHENVLPFTNNIPQRDGGTHMAGFRGALTRT 170

Query: 342 IKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  YA+ +   +        DD       +LSV + +P+F+ QTK KLVS + +  VE  
Sbjct: 171 INNYAQSSGIAKREKISFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGL 230

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    +  +NP EA  ++  +IE +  R   RK R+   RKTA+    L GKL DCS+
Sbjct: 231 VNEKLSEWFEENPAEARIVVGKIIEAAHAREAARKARDLTRRKTAMDVNFLAGKLKDCSE 290

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TE+F+VEGDSAGGSA+  R+R  QA+LPL+GKILNV  A  +++  +Q+I +LV 
Sbjct: 291 KDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVM 350

Query: 519 ALGCRT 524
           ALG   
Sbjct: 351 ALGTGI 356


>gi|58415310|emb|CAH04913.1| DNA gyrase subunit B [Microbacterium imperiale]
          Length = 377

 Score =  176 bits (447), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 114/378 (30%), Positives = 181/378 (47%), Gaps = 15/378 (3%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V V RQ  ++ Q F  G       +K +  ++ GT ITF PDP IF     FD   L   
Sbjct: 1   VEVRRQGHVWRQSFRTGGVPQAPLEKGEATDETGTTITFWPDPDIFETV-EFDYDTLRTR 59

Query: 231 TQSKAYLSGRVKTCWSCDK---------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
            Q +A+L+  ++      +         E          ++F +  GL  Y++   + R 
Sbjct: 60  FQQQAFLNKGLRIALDDQRPDSAYVVDLEDGTSENRRPHDDFLYERGLVDYVEYLNKLRK 119

Query: 282 LISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
                    + E +      ++E A+ W       + ++ NTI T EGGTHE G R ALT
Sbjct: 120 TEVVNDEIIEVESEDTVRHISLELAMQWTTSYTENVFTFANTINTHEGGTHEEGFRAALT 179

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
             +  YA       ++  ++  DD+      ++SV + EP+F GQTKTKL + +A+  V+
Sbjct: 180 TKVNAYAREKGLLKEKDDNLTGDDIREGLTAVISVKLSEPQFEGQTKTKLGNTEAKAFVQ 239

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADC 456
             + D    +L +NP +A +++   ++ +  RL  RK RE  R+ +      +P KL DC
Sbjct: 240 KIVGDQLTDWLDRNPAQAKRVIMKAVDAATARLAARKARETARRKSVFESASMPDKLKDC 299

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +      +E+F+VEGDSAGGSA + R+   QA+L LRGK+LNV  A  ++   N +I  +
Sbjct: 300 TSKDPSISEIFLVEGDSAGGSAVRGRDPETQAILSLRGKVLNVEKARLDRALGNNEIQAI 359

Query: 517 VQALGCRTRSQYREEDLR 534
           + A G      +  E  R
Sbjct: 360 ISAFGTGIGEDFSVEKAR 377


>gi|15551697|emb|CAC69417.1| DNA gyrase B subunit [Serratia ficaria]
 gi|15551699|emb|CAC69418.1| DNA gyrase B subunit [Serratia ficaria]
          Length = 323

 Score =  176 bits (447), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 104/334 (31%), Positives = 174/334 (52%), Gaps = 15/334 (4%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG+SVVNALS++L + + R+  +  Q +  G P +PL+   +  +
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYGHGEPQAPLKVVGET-D 59

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           + GT + F P  + F +   F+   L K  +  ++L+  V       +   E       +
Sbjct: 60  QTGTMVRFWPSHQTFTNVTDFEYDILAKRLRELSFLNSGVSIRLKDKRSDRE-------D 112

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F++ GG+K +++   +N++ I   +F   T K       VE A+ W +     I  + N
Sbjct: 113 HFHYEGGIKAFVEYLNKNKTPIHPNVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTN 169

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I   +GGTH  G R A+TR +  Y E      K  +S   DD     + ++SV + +P+
Sbjct: 170 NIPQRDGGTHLVGFRTAMTRTLNSYMEKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPK 229

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQRE 437
           F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+        R+ +  
Sbjct: 230 FSSQTKDKLVSSEVKTAVETLMNEKLVDYLMENPSDAKIVVGKIIDAARAREAARKAREM 289

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
             RK A+    LPGKLADC +     +EL++VEG
Sbjct: 290 TRRKGALDLAGLPGKLADCQERDPALSELYLVEG 323


>gi|220680590|dbj|BAH10784.1| DNA gyrase subunit B [Nocardia yamanashiensis]
          Length = 399

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 118/405 (29%), Positives = 194/405 (47%), Gaps = 33/405 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L   V      ++Q++    P      + +   + GT I F  DP+IF     +
Sbjct: 1   NALSTRLEAEVDHAGYHWTQEYKDAKPGKL--VQGEPTKRTGTTIRFWADPEIFETTT-Y 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-----------------------YGIPE 259
           +   + +  Q  A+L+  +    +  +                                +
Sbjct: 58  NFETVARRLQEMAFLNKGLTITLTDHRVSEGDITDEVVSDTAEAPKHLDENAPAAEPKVK 117

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              +++PGGL+ Y++     ++ I + I     +  G     +E A+ W       + ++
Sbjct: 118 TRTYHYPGGLEDYVKHINRTKTPIHNSIVGFTGKGTGH---ELEVAMQWNSGYSESVHTF 174

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIRE 376
            NTI T EGGTHE G R ALT  + KYA+  +  +    ++  DD+      I+SV + +
Sbjct: 175 ANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKEGNLTGDDIREGLAAIVSVKVAD 234

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F GQTKTKL + D +  V+    +   H+   NP +A  +++  +  ++ R+  RK R
Sbjct: 235 PQFEGQTKTKLGNTDVKGFVQRTCNEHLTHWFEANPADAKTIVQKAVSSAQARVAARKAR 294

Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LPLRGK
Sbjct: 295 ELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGK 354

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           I+NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 IINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDIAKLRYHKIVL 399


>gi|318066887|emb|CBY89155.1| DNA gyrase subunit B [Kushneria avicenniae]
          Length = 349

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 125/360 (34%), Positives = 192/360 (53%), Gaps = 16/360 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS++L +T+ R+N +  Q +  G+P SPL        + GT+I F+P  + F +
Sbjct: 1   VSVVNALSEQLKLTIWRKNQVHEQVYQHGVPQSPLAVVGDT-ERSGTQIHFKPSAETFAN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      +++  E       E F++ GGL+ ++     
Sbjct: 60  I-EFHYDILAKRLRELSFLNSGVAIRLLDERDGRE-------ELFHYEGGLRAFVDHLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           NR++I+         + G     VE A+ W +     I  Y N I   +GGTH +G R A
Sbjct: 112 NRTIINPVFHFNAEREDGI---AVEVAMQWNDSYSENIFCYTNNIPQRDGGTHMAGFRGA 168

Query: 338 LTRGIKKYAE--LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E    Q K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRSLNSYIEAEELQKKSKVTTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  +      YL++NP EA  ++  +++ +  R   RK      RK A+    LPGKLA
Sbjct: 229 VEQEMSRQLSDYLLENPNEAKAIVNKMLDAARARDAARKAREMTRRKGALDIAGLPGKLA 288

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 289 DCQEKDPTRSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 348


>gi|199974915|gb|ACH92122.1| DNA gyrase subunit B [Thiothrix fructosivorans]
          Length = 369

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 137/380 (36%), Positives = 198/380 (52%), Gaps = 16/380 (4%)

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L +T+ R   +  Q +  G P++PL          GT + F P  +IF    
Sbjct: 1   VVNALSADLELTIRRNGKLHQQMYKLGDPVAPLAIIGDTEG-TGTSVRFWPSAEIFALT- 58

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L K  +  ++L+  V+      +          ++ F + GG+K ++     N+
Sbjct: 59  EFHYDILAKRLRELSFLNSGVRIHLIDRRG------EGREDVFEYEGGIKAFVAHLNRNK 112

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           S I + I    TE+ G     VE A+ W +     I  Y N I   +GG+H SG R ALT
Sbjct: 113 SPIHNNIIYFTTERDGV---GVEVALQWNDSYQENIFCYTNNIPQRDGGSHLSGFRAALT 169

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  Y E      K  IS   DD       +LSV + +P+F+ QTK KLVS + +  VE
Sbjct: 170 RTLNSYIESAGLAKKEKISPTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKGIVE 229

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADC 456
            A+ +    +L+++P EA  +   +IE +  R   RK      RK A+    LPGKLADC
Sbjct: 230 AAMNERLGEFLLESPSEAKLIAGKMIEAARAREAARKARDMTRRKGALDIAGLPGKLADC 289

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            +     +ELF+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++Q++  L
Sbjct: 290 QEKDPALSELFLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVERARFDKMISSQEVGTL 349

Query: 517 VQALGCRT-RSQYREEDLRY 535
           + ALGC   R +Y  + LRY
Sbjct: 350 IIALGCGIGREEYNIDKLRY 369


>gi|148762453|dbj|BAF63928.1| DNA gyrase subunit B [Virgibacillus sp. JM-Vb]
          Length = 324

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 120/336 (35%), Positives = 175/336 (52%), Gaps = 16/336 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG SVVNALS  L V V   N I    F +G+P   +E   +  +  GT  
Sbjct: 1   YKVCGGLHGVGASVVNALSTNLEVHVHLDNKIHYLGFKKGVPQGEIEVVGET-DVTGTTT 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F PDP+IF     +D   L +  +  A+L+  +       +   E         +++ G
Sbjct: 60  HFVPDPEIFDT-TEYDYDTLTQRLRELAFLNKGITITVEDKRTDEE------PVSYFYEG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K+Y++     + ++    F  + E +G    +VE AI + E     + S+ N I T E
Sbjct: 113 GIKSYVEFINRTKEVLHEP-FYAEGEDQGI---SVEVAIQYNEGFASSLYSFANNIHTYE 168

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GG+HESG R  LTR I  YA      R    ++  DD+      I+SV   +P+F GQTK
Sbjct: 169 GGSHESGFRTGLTRVINDYARKNNLYRENDPNLSGDDVREGMTAIVSVKHPDPQFEGQTK 228

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
           TKL + +A+   ++   + F  +L +NP  A  +++  +  S  RL  +K RE   RK+A
Sbjct: 229 TKLGNSEARTITDSVFSEMFSKFLYENPSVAKIIVDKGLMASRARLAAKKARELTRRKSA 288

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADCS   A  +EL+IVEGDSAGGS K
Sbjct: 289 LEISNLPGKLADCSSKDAKISELYIVEGDSAGGSTK 324


>gi|318066885|emb|CBY89154.1| DNA gyrase subunit B [Kushneria aurantia]
          Length = 349

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 125/360 (34%), Positives = 193/360 (53%), Gaps = 16/360 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +T+ R + +  Q +  G+P SPL        + GT+I+F+P  + F +
Sbjct: 1   VSVVNALSEELKLTIWRNHQVHEQTYHHGVPQSPLAVVGDT-ERSGTQISFKPSSETFAN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      +++  E       E F++ GGL+ ++     
Sbjct: 60  I-EFHYEILAKRLRELSFLNSGVAIRLIDERDGRE-------ELFHYEGGLRAFVDHLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           NR+ ++           G     VE A+ W +     I  Y N I   +GGTH +G R A
Sbjct: 112 NRTTVNPVFHFNVERDDGI---AVEVAMQWNDSFTENIFCYTNNIPQRDGGTHMAGFRAA 168

Query: 338 LTRGIKKY--AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y  +E  Q K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRSLNSYIESEELQKKAKVTTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454
           VE  +      YL++NP EA  ++  +++ +  R   RK R    RK A+    LPGKLA
Sbjct: 229 VEQEMSRQLSDYLLENPNEAKAIVNKMLDAARAREAARKAREMTRRKGALDIAGLPGKLA 288

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL++VEGDSAGGSAKQ R+R +QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 289 DCQEKDPTRSELYLVEGDSAGGSAKQGRDRRSQAILPLKGKILNVEKARFDKMLSSAEVG 348


>gi|207107930|dbj|BAG71977.1| DNA gyrase subunit B [Gordonia soli]
          Length = 408

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 122/414 (29%), Positives = 199/414 (48%), Gaps = 37/414 (8%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SV +ALS    + +      +   ++R +P        +   K GT + F PD  IF 
Sbjct: 1   GMSVGHALSPRAELEIDYGGYRWDPVYTRAMPGPVN--HGEATKKTGTTVRFWPDGDIFE 58

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSC---------------------------DKE 250
               F A  + +  Q  A+L+  +    +                            ++E
Sbjct: 59  TTN-FSAETIARRLQEMAFLNKGLTITLTDRRVAAADPVGDSDDDREGEDAAERIKSEEE 117

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
            A +   P+   +++P GL  Y++     +  I + +     + +G     VE A+ W  
Sbjct: 118 KATEAAKPKTRTYHYPDGLVDYIKHLNRTKQPIHTSVVGFTGKGEGH---EVEIAMQWNA 174

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                + ++ NTI T EGGTHE G R ALT  + KYA   +   ++   +  DD+     
Sbjct: 175 GYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLLKEKDGKLTGDDIREGLA 234

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP EA  +++  ++ ++
Sbjct: 235 AVISVKVSDPQFEGQTKTKLGNTEVRSFVQRMSNEHLGHWFESNPAEAKTIIKKAVDSAQ 294

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R+  RK RE V RKTA     LPGKLADC  N     E+++VEGDSAGGSAK  R+   
Sbjct: 295 ARIAARKARELVRRKTATDIGGLPGKLADCRSNDPAKCEVYLVEGDSAGGSAKTGRDSMY 354

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           QA+LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 QAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDIAKLRYHKIVL 408


>gi|19909733|dbj|BAB87062.1| DNA gyrase subunit B [Cupriavidus necator]
          Length = 271

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 88/279 (31%), Positives = 143/279 (51%), Gaps = 33/279 (11%)

Query: 99  VSLDGNGFLTVVDNGRGIP--VENHPKFP-NKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
           V++  +  +++VDNGRGIP  V+   K    +S  EI +T LHAGGKF+ ++Y++SGGLH
Sbjct: 2   VTIHSDNSISIVDNGRGIPPLVKFDDKHEPKRSAAEIAMTELHAGGKFNQNSYKVSGGLH 61

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRG-----------------IPLSPLEKKEK 198
           GVG+S VNALS  L +TV R   +   +F++G                 + +SP++    
Sbjct: 62  GVGVSCVNALSKWLRLTVRRDGKVHLIEFAKGDVQNRIIETVNGPDGQPVEVSPMKIIGD 121

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +KRGT + F  D +IF +   F    L K  +  ++L+  V       +         
Sbjct: 122 T-DKRGTEVHFLADEEIFTN-VEFHYEILSKRIRELSFLNNGVHIKLVDQR-------TG 172

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           ++E+F F GG+K +++     ++++   IF    EK G     VE ++ W +    ++  
Sbjct: 173 KEEDFAFSGGVKGFVEYINRAKTVLHPNIFYANAEKDGI---AVEVSMQWNDGYNEQVLC 229

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
           + N I   +GGTH +GLR A+TR I KY E  +  +   
Sbjct: 230 FTNNIPQRDGGTHLTGLRAAMTRVINKYIEENEIAKKAK 268


>gi|220680534|dbj|BAH10756.1| DNA gyrase subunit B [Nocardia inohanensis]
          Length = 399

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 119/405 (29%), Positives = 195/405 (48%), Gaps = 33/405 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L   V      ++Q++    P    +   +   + GT I F  DP+IF     +
Sbjct: 1   NALSTRLEAEVDTAGFHWTQEYKDAKPGKLFQ--GEATKRTGTTIRFWADPEIFETTT-Y 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSC-----------------------DKEIAEKYGIPE 259
           +   + +  Q  A+L+  +    +                        D+         +
Sbjct: 58  NFETVARRLQEMAFLNKGLTITLTDQRVSEGDITDEVVSDTAEAPKHLDENAPVAEPKVK 117

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              +++PGGL+ Y++     ++ I + I     +  G     +E A+ W       + ++
Sbjct: 118 TRTYHYPGGLEDYVKHINRTKTAIHNSIVGFTGKGTGH---ELEVAMQWNSGYSESVHTF 174

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIRE 376
            NTI T EGGTHE G R ALT  + KYA+  +  +    ++  DD+      I+SV + +
Sbjct: 175 ANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKEGNLTGDDIREGLAAIVSVKVAD 234

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F GQTKTKL + D +  V+    +   H+   NP +A  +++  +  ++ R+  RK R
Sbjct: 235 PQFEGQTKTKLGNTDVKGFVQRTCNEHLTHWFEANPADAKTIVQKAVSSAQARVAARKAR 294

Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LPLRGK
Sbjct: 295 ELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGK 354

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           I+NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 IINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDIAKLRYHKIVL 399


>gi|15551703|emb|CAC69416.1| DNA gyrase B subunit [Serratia entomophila]
          Length = 323

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 104/334 (31%), Positives = 174/334 (52%), Gaps = 15/334 (4%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG+SVVNALS++L + + R+  +  Q +  G+P +PL+   +   
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYGHGVPQAPLKVVGET-E 59

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           + GT + F P  + F +   F+   L K  +  ++L+  V       +   E       +
Sbjct: 60  QTGTMVRFWPSHQTFTNVTDFEYDILAKRLRELSFLNSGVSIRLKDKRSDRE-------D 112

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F++ GG+K +++   +N++ I   +F   T K       VE A+ W +     I  + N
Sbjct: 113 HFHYEGGIKAFVEYLNKNKTPIHPNVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTN 169

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I   +GGTH  G R A+TR +  Y E      K  +S   DD     + ++SV + +P+
Sbjct: 170 NIPQRDGGTHLVGFRTAMTRTLNSYMEKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPK 229

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQRE 437
           F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+        R+ +  
Sbjct: 230 FSSQTKDKLVSSEVKTAVETLMNEKLVDYLMENPSDAKIVVGKIIDAARAREAARKAREM 289

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
             RK A+    LPGKLADC +     +EL++VEG
Sbjct: 290 TRRKGALDLAGLPGKLADCQERDPALSELYLVEG 323


>gi|118201822|gb|ABK79724.1| DNA gyrase subunit b [Sulfitobacter dubius]
          Length = 356

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 118/366 (32%), Positives = 189/366 (51%), Gaps = 14/366 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALSD L + + R+      +F  G     LE      ++ GT + F      F ++  +
Sbjct: 1   NALSDWLELRIWREGKEHIARFEGGFTTKHLEVLGDT-DRTGTEVRFMASTDTFSNR-EY 58

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  A+L+  V+   + ++        P + E Y+ GG+K +++    +++ 
Sbjct: 59  SFETLEKRLRELAFLNSGVRIILTDER-----PVEPLRTELYYDGGVKEFVKYLDRHKTS 113

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           +  E      E+       +E A+ W +   E    + N I   +GGTH +G R ALTR 
Sbjct: 114 VMPEPIFITGERDDI---GIEVAMWWNDSYHENVLPFTNNIPQRDGGTHMAGFRGALTRT 170

Query: 342 IKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  YA+ +   +   I+   DD       +LSV + +P+F+ QTK KLVS + +  VE  
Sbjct: 171 INGYAQSSGIAKREKINFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGL 230

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    +  +NP EA +++  ++E ++ R   RK RE   RK+A+    L GKL DCS+
Sbjct: 231 VNEKLAEWFEENPNEAKQIVGKIVEAAQAREAARKARELTRRKSAMDVNFLAGKLKDCSE 290

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TE+F+VEGDSAGGSA+  R+R  QA+LPL+GKILNV  A  +++  +Q+I +LV 
Sbjct: 291 KDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVM 350

Query: 519 ALGCRT 524
           ALG   
Sbjct: 351 ALGTGI 356


>gi|171702700|dbj|BAG16318.1| DNA gyrase subunit B [Flavobacterium sp. GMA3-49]
 gi|171702748|dbj|BAG16342.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-129]
          Length = 356

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 124/360 (34%), Positives = 187/360 (51%), Gaps = 9/360 (2%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            I+ Q++ RG  L P+++  +  +KRGT  TF PD  IF     F    L    +  ++L
Sbjct: 2   KIYEQEYERGKSLYPVKQIGET-DKRGTMQTFYPDDTIFTQTTEFSFETLSARMRELSFL 60

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +   ++  +E  +K G    E F+   GLK Y++    NR  I S + +   EK   
Sbjct: 61  NKGITITFTDKRE-VDKDGNFVSEVFHSDEGLKEYIRYLDGNREPIISHVISMDNEK--- 116

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRA 354
               VE A+ +       I SY N I T EGGTH  G R  LTR +KKYA+ +    K  
Sbjct: 117 GEIPVEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRTGLTRSLKKYADASGLLDKLK 176

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             I  DD       I+SV + EP+F GQTKTKL + +    V  A+ +  ++YL +NP +
Sbjct: 177 FEISGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVVSPVSQAVSEMIENYLEENPND 236

Query: 415 ATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA-DCSQNIAHGTELFIVEGDS 473
           A  +++ VI  ++ R   +K RE+ ++  +           DCS+      E+++VEGDS
Sbjct: 237 AKIIVQKVILAAQARHAAKKAREMVQRKTVLGGGGLPGKLSDCSEQDPAKCEVYLVEGDS 296

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGG+AKQ R+R+ QA+LPLRGKILNV  A   K+  N++I ++  ALG    +    + L
Sbjct: 297 AGGTAKQGRDRNFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTIGTADDSKAL 356


>gi|118201780|gb|ABK79703.1| DNA gyrase subunit b [Oceanibulbus indolifex]
          Length = 356

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 118/366 (32%), Positives = 189/366 (51%), Gaps = 14/366 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALSD L + + R+      +F  G     LE      ++ GT + F      F ++  +
Sbjct: 1   NALSDWLELRIWREGKEHIARFEGGFTTKHLEVLGDT-DRTGTEVRFMASTDTFSNR-EY 58

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  A+L+  V+   + ++        P + E Y+ GG+K +++    +++ 
Sbjct: 59  IFETLEKRLRELAFLNSGVRIILTDER-----PVEPLRTELYYDGGVKEFVKYLDRHKTS 113

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           +  E      E+       +E A+ W +   E    + N I   +GGTH +G R ALTR 
Sbjct: 114 VMPEPIFITGERDDI---GIEVAMWWNDSYHENVLPFTNNIPQRDGGTHMAGFRGALTRT 170

Query: 342 IKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  YA+ +   +   I+   DD       +LSV + +P+F+ QTK KLVS + +  VE  
Sbjct: 171 INGYAQSSGIAKREKINFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGL 230

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    +  +NP EA +++  ++E ++ R   RK RE   RK+A+    L GKL DCS+
Sbjct: 231 VNEKLAEWFEENPAEAKQIVGKIVEAAQAREAARKARELTRRKSAMDVNFLAGKLKDCSE 290

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TE+F+VEGDSAGGSA+  R+R  QA+LPL+GKILNV  A  +++  +Q+I +LV 
Sbjct: 291 KDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVM 350

Query: 519 ALGCRT 524
           ALG   
Sbjct: 351 ALGTGI 356


>gi|33146000|emb|CAD57641.2| DNA gyrase subunit B [Vibrio splendidus]
          Length = 355

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 126/364 (34%), Positives = 193/364 (53%), Gaps = 14/364 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS ++ +T+ R   I +Q++  G P +PL       +K GT I F P  + F +   F
Sbjct: 1   NALSKQVTLTIHRGGKIHTQRYCHGEPQAPLAVVGDT-DKTGTEIRFWPSEETFTNI-EF 58

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  ++L+  V       +E        + + F + GG++ +++    N++ 
Sbjct: 59  HYDILAKRLRELSFLNSGVSIKLIDKRE------EDKMDHFEYEGGIQAFVEHLNTNKTP 112

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           I  +IF   +E+      TVE A+ W +     I  + N I   +GG H +G R ALTR 
Sbjct: 113 IIQKIFHFDSERDD--GITVEVAMQWNDGYQENIYCFTNNIPQRDGGAHLAGFRAALTRT 170

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +  + +      K   S   DD       I+SV + +P+F+ QTK KLVS + +  VE+ 
Sbjct: 171 LNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVEST 230

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQ 458
           + +    +L++NP EA  +   +I+ +  R   RK      RK A+    LPGKLADC +
Sbjct: 231 MGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTRRKGALDLAGLPGKLADCQE 290

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ 
Sbjct: 291 KDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 350

Query: 519 ALGC 522
           ALGC
Sbjct: 351 ALGC 354


>gi|148762409|dbj|BAF63906.1| DNA gyrase subunit B [Virgibacillus marismortui]
          Length = 322

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 119/334 (35%), Positives = 173/334 (51%), Gaps = 16/334 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG SVVNALS  L V V   N I    F +G+P   +E   +  +  GT  
Sbjct: 1   YKVCGGLHGVGASVVNALSTNLEVHVHLDNKIHYLGFKKGVPQGEIEVVGET-DVTGTTT 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F PDP+IF     +D   L +  +  A+L+  +       +   E         +++ G
Sbjct: 60  HFVPDPEIFDT-TEYDYDTLTQRLRELAFLNKGITITVEDKRTDEE------PVSYFYEG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K+Y++     + ++    F  + E +G    +VE AI + E     + S+ N I T E
Sbjct: 113 GIKSYVEFINRTKEVLHEP-FYAEGEDQGI---SVEVAIQYNEGFASSLYSFANNIHTYE 168

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GG+HESG R  LTR I  YA      R    ++  DD+      I+SV   +P+F GQTK
Sbjct: 169 GGSHESGFRTGLTRVINDYARKNNLYRENDPNLSGDDVREGMTAIVSVKHPDPQFEGQTK 228

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
           TKL + +A+   ++   + F  +L +NP  A  + +  +  S  RL  +K RE   RK+A
Sbjct: 229 TKLGNSEARTITDSVFSEMFSKFLYENPSVAKIIADKGLMASRARLAAKKARELTRRKSA 288

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           +    LPGKLADCS   A  +EL+IVEGDSAGGS
Sbjct: 289 LEISNLPGKLADCSSKDAKISELYIVEGDSAGGS 322


>gi|307343774|emb|CBJ19492.1| gyrase B subunit [Micromonospora endolithica]
          Length = 364

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 105/369 (28%), Positives = 185/369 (50%), Gaps = 9/369 (2%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           +    + Q++    P    +   +  ++ G+ ++F PDP +F     FD   + +  Q  
Sbjct: 2   KSGFFWRQQYHHSKPTPLEK--GEPTDRTGSAVSFWPDPDVFETV-EFDFQTIYRRLQEM 58

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           A+L+  +      ++    + G   +  F++ GG+  +++    +++ +   +     E+
Sbjct: 59  AFLTRGLTIHLLDERVPEGEEGKIREVTFHYEGGIADFVRHLNASKTPMHKTVVEFGAEE 118

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR 353
           +G    ++E A+ W E     + ++ N I T EGGTHE G R ALT  + +Y    +  +
Sbjct: 119 EG---MSLEIAMQWNESYGESVYTFANNINTHEGGTHEEGFRAALTSVVNRYGAEKKLLK 175

Query: 354 -AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
               +  +D+      I+SV +  P+F GQTKTKL +   +  V+    D    +L +NP
Sbjct: 176 GDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWLDRNP 235

Query: 413 IEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
            EA  ++ +           ++ ++   RK+ +    +PGKLADC       +E+FIVEG
Sbjct: 236 AEAKIIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVEG 295

Query: 472 DSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE 531
           DSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG      +  E
Sbjct: 296 DSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGIHDDFDME 355

Query: 532 DLRYEKVII 540
            LRY K+++
Sbjct: 356 KLRYHKMLL 364


>gi|318066869|emb|CBY89146.1| DNA gyrase subunit B [Halomonas pantelleriensis]
          Length = 349

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 127/360 (35%), Positives = 186/360 (51%), Gaps = 16/360 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +T+ R   +  Q +  G+P  PL    K     GTR+ FRP P  FG+
Sbjct: 1   VSVVNALSEELKLTIWRAGQVHEQIYHHGVPEGPLGVVGKTEK-SGTRVHFRPSPDTFGN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F++ GGL+ ++     
Sbjct: 60  I-EFHYDILAKRLRELSFLNSGVAIRLLDERSGKE-------ELFHYEGGLRAFVDHLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ I+           G     VE A+ W +     I  Y N I   +GGTH +G R +
Sbjct: 112 NKTAINPVFHFSAERDDGV---GVEVAMQWNDTFAENIFCYTNNIPQRDGGTHLAGFRAS 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRTLNNYIEAEGLLKKAKVNTAGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  +   F  YLV+ P EA  ++  ++E +  R   RK      RK A+    LPGKLA
Sbjct: 229 VEQEMGRLFADYLVEKPNEAKAIVNKMLEAARAREAARKARDMTRRKGALDIAGLPGKLA 288

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 289 DCQEKDPSLSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 348


>gi|318066883|emb|CBY89153.1| DNA gyrase subunit B [Halotalea alkalilenta]
          Length = 349

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 123/360 (34%), Positives = 190/360 (52%), Gaps = 16/360 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS +L +T+ R   +  Q +  G+P +PL        + GT+I F P P+ F +
Sbjct: 1   VSVVNALSSKLKLTIWRAGKVHEQTYVHGVPQAPLAVVGDT-ERSGTQIHFVPSPETFAN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V    + +++  E       E F++ GGL+ ++    +
Sbjct: 60  I-EFHYEILAKRLRELSFLNSGVAIRLADERDGRE-------ELFHYEGGLRAFVDHLNK 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           NR+ +          + G     VE A+ W +     +  Y N I   +GGTH +G R A
Sbjct: 112 NRATVCPVFHFNVEREDGI---GVEVAMQWNDSYNENLLCYTNNIPQRDGGTHLAGFRAA 168

Query: 338 LTRGIKKYAE--LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E    Q K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRTLNSYIEAEELQKKAKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  +   F  YL+++P EA  ++  +I+ +  R   RK      RK A+    LPGKLA
Sbjct: 229 VEQEMGRNFADYLLEHPQEAKTIVNKMIDAARARDAARKAREMTRRKGALDIAGLPGKLA 288

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 289 DCQEKDPAKSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 348


>gi|89143184|emb|CAJ57489.1| DNA gyrase subunit B [Microbacterium foliorum]
          Length = 365

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 114/365 (31%), Positives = 183/365 (50%), Gaps = 13/365 (3%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V V ++  ++   F+ G       +K +  ++ GT ITF PD +IF +   F+   L   
Sbjct: 1   VEVKQKGFVWRHSFADGGVPQQKLEKGEASDETGTSITFWPDAEIFTETTDFEYDTLRTR 60

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPE--------KEEFYFPGGLKTYLQTKLENRSL 282
            Q  A+L+  ++   S ++  +      +         + F +  GL  Y++   + R  
Sbjct: 61  FQQMAFLNKGLRIELSDERPKSAYEVEVDGQATLTQPNDVFLYERGLVDYVEYLNKARHA 120

Query: 283 ISSEIFTGKTEKKGTHR-GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
                     E + T R  ++E A+ W       + +Y NTI T EGGTHE G R ALT 
Sbjct: 121 EVVNDEIIAFESEDTQRKISLEVAMQWTTSYTENVFTYANTINTHEGGTHEEGFRAALTT 180

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            + KYA       ++  ++  DD+      ++S+ + EP+F GQTKTKL + +A+  V+ 
Sbjct: 181 LVNKYARANNLLKEKDDNLSGDDVREGLTAVISIKLGEPQFEGQTKTKLGNTEAKAFVQK 240

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCS 457
            + D    +  +NPI+A  ++   I+ +  RL  RK RE  R+ +      +P KL DC+
Sbjct: 241 VVGDQLGDWFGRNPIQAKNVIRKAIDAATARLAARKARETARRKSVFESAAMPDKLKDCT 300

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                 +E+F+VEGDSAGGSA Q R+   QA+L LRGKILNV  A  +K   N+++  ++
Sbjct: 301 SKDPSISEIFLVEGDSAGGSAVQGRDPHTQAILALRGKILNVERARLDKALANKEVQAMI 360

Query: 518 QALGC 522
           QA G 
Sbjct: 361 QAFGT 365


>gi|318066899|emb|CBY89161.1| DNA gyrase subunit B [Zymobacter palmae]
          Length = 349

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 125/360 (34%), Positives = 192/360 (53%), Gaps = 16/360 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS EL +T+ R   +  Q +  G+P SPL    +   + GT++ FRP  + F +
Sbjct: 1   VSVVNALSAELTLTIWRSGKVHEQTYIHGVPQSPLAVIGET-ERTGTQVHFRPSAETFAN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      +++  E       E F++ GGL+ +++   +
Sbjct: 60  I-KFVYDILAKRLRELSFLNSGVAIRLIDERDNRE-------EVFHYEGGLRAFVEHLNQ 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           NR+ +          + G     VE A+ W +     +  Y N I   +GGTH +G R A
Sbjct: 112 NRTPLCPVFHFNIEREDGI---GVEVAMQWNDSFNENLHCYTNNIPQRDGGTHLAGFRAA 168

Query: 338 LTRGIKKY--AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y  +E  Q K  +S   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRTLNSYIESEELQKKSKVSTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  +   F  YL+++P EA  ++  +I+ +  R   RK      RK A+    LPGKLA
Sbjct: 229 VEQEMNRQFSEYLLEHPSEAKTIVNKMIDAARARDAARKAREMTRRKGALDIAGLPGKLA 288

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 289 DCQEKDPAKSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 348


>gi|218139449|gb|ACK57883.1| GyrB [Actinobaculum schaalii]
          Length = 403

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 122/406 (30%), Positives = 195/406 (48%), Gaps = 24/406 (5%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS  +   V R   ++   +  G+P   LE+ E+      T  TF  +P I
Sbjct: 1   GVGVSVVNALSTRMETIVKRDGYVWRIAYENGVPTRELERGEETTETG-TTQTFWANPDI 59

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE---------------KYGIPEK 260
           F     +D   L K     A+L+  ++     ++  A                +     +
Sbjct: 60  FETT-DYDFETLRKRFHQMAFLNKNLRINLIDERRSATSEGDEVTGAEGETAAEVPARRE 118

Query: 261 EEFYFPGGLKTYLQTKLENR--SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
             + + GGL  Y++     +   +I+++I   + E     +  VE A+ W       + +
Sbjct: 119 VSYCYSGGLLDYVKFLNSMKKSEIINNDIIYFEAEDD-EKQIEVEVAMQWTSAYSESVNT 177

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + NTI T EGG HE G R ALT  I KYA        +  ++  DD+      ++SV + 
Sbjct: 178 FANTINTTEGGMHEEGFRSALTSVINKYAREHGLLKDKDPNLSGDDVREGLTAVISVKLG 237

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
            P+F GQTKTKL + +A+  V+  +      +L  +P +A +++    +    R   RK 
Sbjct: 238 NPQFEGQTKTKLGNTEARTFVQQQMYTQLSDWLDSHPADAKEIIRKGTQAFAARAAARKA 297

Query: 436 REVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE  R+ + +    +PGKL DC+ N     E+FIVEGDSAGGSA   R+  +QA++P+RG
Sbjct: 298 REATRRKSVLESASMPGKLKDCTSNKPEECEIFIVEGDSAGGSAVNGRDPEHQAIMPIRG 357

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           KILNV  A  ++  ++  I  L+ A G     ++  + LR  K+I 
Sbjct: 358 KILNVEKARLDRALSSDTIQSLITAFGTGIGDEFDIDKLRSHKIIS 403


>gi|269799072|gb|ACZ43814.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 316

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 100/302 (33%), Positives = 165/302 (54%), Gaps = 14/302 (4%)

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186
            S  E+ILT LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L +T+ R   I +Q +  
Sbjct: 1   VSAAEVILTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELTIFRHGKIHNQTYRH 60

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G+P  P+ +   V +  GT + F P  + F +   F    L K  +  ++L+  V     
Sbjct: 61  GVPDGPMAETG-VIDGTGTELRFWPSHETFTNTL-FHYDILAKRLRELSFLNSGVSIKLI 118

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
            ++E        + + F + GG+K ++     N++ I+ + F    E++     TVE A+
Sbjct: 119 DERED------GKSDHFVYEGGIKAFVDYLNVNKTPINKDAFHFSVERED--GITVEVAM 170

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE---LTQNKRAISIISDDL 362
            W +     I  + N I   +GGTH +G R ALTR +  Y E     +  ++ +   DD 
Sbjct: 171 QWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMEKEGFLKKAKSSTATGDDA 230

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
                 ++SV + +P+F+ QTK KLVS + +  VE A+ +    YL++NP EA+ ++  +
Sbjct: 231 REGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQAMGEKLAEYLLENPKEASTVVTKI 290

Query: 423 IE 424
           I+
Sbjct: 291 ID 292


>gi|261488478|emb|CAU94914.1| DNA gyrase subunit B [Kinneretia asaccharophila]
          Length = 336

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 104/323 (32%), Positives = 165/323 (51%), Gaps = 27/323 (8%)

Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178
           + H   P +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV R   
Sbjct: 1   DKHE--PKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKYLRLTVRRDGK 58

Query: 179 IFSQKFSRGIP------------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAAR 226
           +   +F +G+P            +SP+       +KRGT + F PD +IF     F    
Sbjct: 59  VHQIEFKKGVPQDRVLQMRDGFEVSPMRVIGDT-DKRGTEVHFLPDTEIFQQNNEFHYEI 117

Query: 227 LLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSE 286
           L K  +  ++L+  VK     ++   E         F + GG+K +++   + ++ +   
Sbjct: 118 LAKRLRELSFLNNGVKIRLVDERNNKEDN-------FAYAGGVKGFVEFINKGKTTLHPN 170

Query: 287 IFTGKTEKKGTH--RGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRGIK 343
           IF    EK         VE ++ W +  N  +  + N I   +GGTH +GLR A+TR I 
Sbjct: 171 IFHAVGEKVSEQGTNIGVEVSMQWNDGFNENVFCFTNNIPQRDGGTHLTGLRAAMTRVIN 230

Query: 344 KYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
           KY E  +   K  + +  DD+      ++SV + EP+F+ QTK KLVS + +  VE  + 
Sbjct: 231 KYIEDNELAKKAKVEVAGDDMREGLACVVSVKVPEPKFSSQTKDKLVSSEVRAPVEEIVS 290

Query: 402 DPFDHYLVQNPIEATKLLEWVIE 424
                YL++NP++A  +   +++
Sbjct: 291 RLLTDYLLENPLDAKTICGKILD 313


>gi|218139453|gb|ACK57884.1| GyrB [Actinobaculum schaalii]
          Length = 403

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 119/405 (29%), Positives = 188/405 (46%), Gaps = 22/405 (5%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS  +   V R   ++   +  G+P   LE+ E+      T  TF  +P I
Sbjct: 1   GVGVSVVNALSTRMETIVKRDGYVWRIAYENGVPTRELERGEETTETG-TTQTFWANPDI 59

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE---------------KYGIPEK 260
           F     +D   L K     A+L+  ++     ++  A                +     +
Sbjct: 60  FETT-DYDFETLRKRFHQMAFLNKNLRINLIDERRSATSEGDEVTGAEGESAAEVPAKRE 118

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSY 318
             + + GGL  Y++     +            E +    +  VE A+ W       + ++
Sbjct: 119 VSYCYSGGLLDYVKFLNSMKKSDIINNDIIYFEAEDDEKQIEVEVAMQWTSAYSESVNTF 178

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            NTI T EGG HE G R ALT  I KYA        +  ++  DD+      ++SV +  
Sbjct: 179 ANTINTTEGGMHEEGFRSALTSVINKYAREHGLLKDKDSNLSGDDVREGLTAVISVKLGN 238

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F GQTKTKL + +A+  V+  +      +L  +P +A +++    +    R   RK R
Sbjct: 239 PQFEGQTKTKLGNTEARTFVQQQMYTQLSDWLDSHPADAKEIIRKGTQAFAARAAARKAR 298

Query: 437 EVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E  R+ + +    +PGKL DC+ N     E+FIVEGDSAGGSA   R+  +QA++P+RGK
Sbjct: 299 EATRRKSVLESASMPGKLKDCTSNKPEECEIFIVEGDSAGGSAVNGRDPEHQAIMPIRGK 358

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           ILNV  A  ++  ++  I  L+ A G     ++  + L   K+I 
Sbjct: 359 ILNVEKARLDRALSSDTIQSLITAFGTGIGDEFDIDKLXXHKIIS 403


>gi|15551681|emb|CAC69426.1| DNA gyrase B subunit [Serratia plymuthica]
          Length = 323

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 103/334 (30%), Positives = 175/334 (52%), Gaps = 15/334 (4%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG+SVVNALS++L + + R+  +  Q ++ G P +PL+   +  +
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYAMGEPQAPLKVVGET-D 59

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           + GT + F P  + F +   F+   L K  +  ++L+  V       +   E       +
Sbjct: 60  QTGTTVRFWPSYETFTNNVEFEYDILAKRLRELSFLNSGVSIRLKDKRTDKE-------D 112

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F++ GG+K +++   +N++ I   +F   T K       VE A+ W +    +I  + N
Sbjct: 113 HFHYEGGIKAFVEYLNKNKTPIHPNVFYFSTVKDDI---GVEVALQWNDGFQEDIYCFTN 169

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I   +GGTH  G R A+TR +  Y +      K  IS   DD     +  +SV + +P+
Sbjct: 170 NIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAKISATGDDAREGLIAAVSVKVPDPK 229

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQRE 437
           F+ QTK KLVS + +  VE  + +    YL+++P +A  ++  +I+        R+ +  
Sbjct: 230 FSSQTKDKLVSSEVKTAVETLMNEKLVDYLMEDPGDAKIVVGKIIDAARAREAARKAREM 289

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
             RK A+    LPGKLADC +     +EL++VEG
Sbjct: 290 TRRKGALDLAGLPGKLADCQERDPALSELYLVEG 323


>gi|171702712|dbj|BAG16324.1| DNA gyrase subunit B [Flavobacterium sp. GMA4-5]
          Length = 356

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 117/360 (32%), Positives = 187/360 (51%), Gaps = 9/360 (2%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            I+ Q++ RG  + P+++     +KRGT +TF PD  IF     ++   L    +  ++L
Sbjct: 2   KIYEQEYERGKAMYPVKQVG-TTDKRGTMVTFHPDKTIFTQTIEYNYDTLAARMRELSFL 60

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +    +  +   +     E E F+   GLK +++     R  I S + + + EK   
Sbjct: 61  NKGITITLTDKRRTKDNG-EYEGEVFHSKEGLKEFVKFLDMGREPIISHVISMEHEK--- 116

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRA 354
               VE A+ +       I SY N I T EGGTH  G R+ LTR +KKYA+ +    K  
Sbjct: 117 GEIPVEVALVYNTSYSENIFSYVNNINTHEGGTHLQGFRMGLTRTLKKYADASGLLDKLK 176

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             I  DD       I+SV + EP+F GQTKTKL + +    V  A+ +  ++YL +NP +
Sbjct: 177 FEIAGDDFREGLTAIISVKVSEPQFEGQTKTKLGNREVVSPVSQAVSEMLENYLEENPND 236

Query: 415 ATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA-DCSQNIAHGTELFIVEGDS 473
           A  +++ VI  ++ R   +K RE+ ++  +           DCS+      E+++VEGDS
Sbjct: 237 AKIIVQKVILAAQARHAAKKAREMVQRKTVLGGGGLPGKLSDCSEQDPAKCEVYLVEGDS 296

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGG+AKQ R+R+ QA++PLRGKILNV  A   K+  N++I ++  ALG    ++   + L
Sbjct: 297 AGGTAKQGRDRNFQAIMPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTIGTEEDSKAL 356


>gi|89143168|emb|CAJ57481.1| DNA gyrase subunit B [Microbacterium aerolatum]
          Length = 366

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 113/358 (31%), Positives = 177/358 (49%), Gaps = 13/358 (3%)

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
           +   F+ G       +K +  ++ GT ITF PDP+IF +   F+   L    Q  A+L+ 
Sbjct: 6   WHHSFANGGTPQQKLEKGEPTDETGTDITFWPDPEIFTESVEFEYDVLRTRFQQMAFLNK 65

Query: 240 RVKTCWSCDKEIAEKYGIPEK--------EEFYFPGGLKTYLQTKLENRSLISSEIFTGK 291
            ++     ++E A      E         + F +  GL  Y++   + R           
Sbjct: 66  GLRIELRDEREGATYEIEEEGTTVTKQRADVFLYERGLVDYVEYLNKVRHAEVVTEEIID 125

Query: 292 TE-KKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            E +    + ++E A+ W     E   +Y NTI T EGGTHE G R ALT  + KYA   
Sbjct: 126 FEAEDVERKISLEIAMQWTTGYSENVYTYANTINTHEGGTHEEGFRAALTTLVNKYARAN 185

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               ++  ++  DD+      ++S+ + EP+F GQTKTKL + +A+  V+  + D    +
Sbjct: 186 NLLKEKDDNLSGDDVREGLTAVISIKLGEPQFEGQTKTKLGNTEAKAFVQKVVGDQLGDW 245

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTEL 466
             +NP +A  ++   I+ +  RL  RK RE  R+ +      +P KL DC+      +E+
Sbjct: 246 FERNPTQAKNVIRKAIDAATARLAARKARETARRKSVFESAAMPDKLKDCTSKDPSISEI 305

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           F+VEGDSAGGSA Q R+   QA+L LRGKILNV  A  +K   N+++  ++QA G   
Sbjct: 306 FLVEGDSAGGSAVQGRDPHTQAILALRGKILNVERARLDKALANKEVQAMIQAFGTGI 363


>gi|170178300|gb|ACB10197.1| DNA gyrase subunit B [Kribbella lupini]
          Length = 369

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 127/370 (34%), Positives = 189/370 (51%), Gaps = 7/370 (1%)

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT ITF P P +F     +    L    +  A+L+  ++     ++    + G P +  
Sbjct: 2   TGTTITFWPSPDVFETTV-YSYETLSTRFREYAFLNKGLELVIRDERPDHTEDGKPVEMS 60

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           F +  GL  Y++     R  +   +   +  + G    ++E A+ W       + ++ N 
Sbjct: 61  FKYDDGLVDYVKYLTGIRETVHQNVIAFEAAQ-GDDSLSLEVAMQWSGSFQESVHTFANA 119

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I T EGGTHE G R ALT  +  + E      K+   +  DD+      I+SV +  P+F
Sbjct: 120 INTHEGGTHEEGFRAALTSLVNSFGEDQGMIKKKEDRLTGDDIREGLTAIISVKLGNPQF 179

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-- 437
            GQTKTKL + + +  V+  + D    +  QNP E  +++      +  RL  RK R+  
Sbjct: 180 EGQTKTKLGNTEVKGFVQRVVNDRLGAWFEQNPQEGREIIRKATAAASARLAARKARDLA 239

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
            NRK  +    LPGKL+DC        E++IVEGDSAGGSAK  R+   QA+LP+RGKIL
Sbjct: 240 RNRKGLLGGGGLPGKLSDCQSTNPEECEVYIVEGDSAGGSAKGGRDPKFQAILPIRGKIL 299

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557
           NV  A  +K+  N ++  ++ ALG      + EE LRY K++IM DADVDG HI +LLLT
Sbjct: 300 NVEKARIDKVLQNNEVQAIISALGTGIHEDFDEEKLRYHKIVIMADADVDGQHIRTLLLT 359

Query: 558 FFYQEMYDLI 567
             ++ M  LI
Sbjct: 360 LLFRFMRPLI 369


>gi|215271448|emb|CAR48213.1| gyrase B subunit [Vibrio cholerae]
          Length = 350

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 122/360 (33%), Positives = 194/360 (53%), Gaps = 14/360 (3%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LS+++ +T+ R   I SQ +  G+P +PL    +   + GT + F P  + F +   F  
Sbjct: 1   LSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGET-ERTGTTVRFWPSAQTFTNI-EFHY 58

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             L K  +  ++L+  V    + ++E  +K      + F + GG++ ++     N++ I 
Sbjct: 59  DILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEGGIQAFVTHLNRNKTPIH 112

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
            ++F    E++     +VE A+ W +     I  + N I   +GGTH +G R ALTR + 
Sbjct: 113 EKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLN 170

Query: 344 KYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            Y +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE+A+ 
Sbjct: 171 NYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMN 230

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNI 460
           +    +L +NP EA  +   +I+ +  R   RK R    RK A+    LPGKLADC +  
Sbjct: 231 EKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKD 290

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ AL
Sbjct: 291 PALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 350


>gi|15551687|emb|CAC69423.1| DNA gyrase B subunit [Serratia marcescens]
          Length = 323

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 105/334 (31%), Positives = 173/334 (51%), Gaps = 15/334 (4%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG+SVVNALS++L + + R+  +  Q +S G P +PL    +   
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYSHGEPQAPLTVVGET-E 59

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           + GT + F P  + F +   F+   L K  +  ++L+  V       +   E       +
Sbjct: 60  QTGTMVRFWPSHQTFTNVTDFEYDILAKRLRELSFLNSGVSIRLKDKRTDRE-------D 112

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F++ GG+K +++   +N++ I   +F   T K       VE A+ W +     I  + N
Sbjct: 113 HFHYEGGIKAFVEYLNKNKTPIHPNVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTN 169

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I   +GGTH  G R A+TR +  Y E      K  +S   DD     + ++SV + +P+
Sbjct: 170 NIPQRDGGTHLVGFRTAMTRTLNSYMEKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPK 229

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQRE 437
           F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+        R+ +  
Sbjct: 230 FSSQTKDKLVSSEVKTAVETLMNEKLVDYLMENPGDAKIVVGKIIDAARAREAARKAREM 289

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
             RK A+    LPGKLADC +     +EL++VEG
Sbjct: 290 TRRKGALDLAGLPGKLADCQERDPALSELYLVEG 323


>gi|15551689|emb|CAC69424.1| DNA gyrase B subunit [Serratia marcescens subsp. marcescens]
          Length = 323

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 104/334 (31%), Positives = 172/334 (51%), Gaps = 15/334 (4%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG+SVVNALS++L + + R+  +  Q +S G P +PL    +   
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYSHGEPQAPLTVVGET-E 59

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           + GT + F P  + F +   F+   L K  +  ++L+  V       +   E       +
Sbjct: 60  QTGTMVRFWPSHQTFTNVTDFEYDILAKRLRELSFLNSGVSIRLKDKRTDRE-------D 112

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F++ GG+K +++   +N++ I   +F   T K       VE A+ W +     I  + N
Sbjct: 113 HFHYEGGIKAFVEYLNKNKTPIHPNVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTN 169

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
                +GGTH  G R A+TR +  Y E      K  +S   DD     + ++SV + +P+
Sbjct: 170 NTPQRDGGTHLVGFRTAMTRTLNSYMEKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPK 229

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQRE 437
           F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+        R+ +  
Sbjct: 230 FSSQTKDKLVSSEVKTAVETLMNEKLVDYLMENPGDAKIVVGKIIDAARAREAARKAREM 289

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
             RK A+    LPGKLADC +     +EL++VEG
Sbjct: 290 TRRKGALDLAGLPGKLADCQERDPALSELYLVEG 323


>gi|15551707|emb|CAC69411.1| DNA gyrase B subunit [Plesiomonas shigelloides]
          Length = 322

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 105/334 (31%), Positives = 178/334 (53%), Gaps = 16/334 (4%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG+SVVNALSD+L + + R+  + +Q++  G P++PL       N
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSDKLELMIRREGKVHTQEYHLGEPVAPLAVVGDT-N 59

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             GT++ F P P IF +   F    L K  +  ++L+  V       +         +++
Sbjct: 60  ATGTQVRFWPSPTIFTN-IEFQYEILAKRLRELSFLNSGVSIHLLDKR-------NDKQD 111

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCN 320
            F + GG++ +++    N++ I  ++    +EK G     VE A+ W +   E    + N
Sbjct: 112 HFKYEGGIQAFVEYLNRNKTPIHDKVCYFSSEKDGI---GVEVALQWNDGFQENLYCFTN 168

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPE 378
            I   +GGTH +G R A+TR +  Y E     +   I++  DD       ++SV + +P+
Sbjct: 169 NIPQRDGGTHLAGFRAAMTRTLNAYIEKEGLPKKAKINMTGDDPREGLTAVISVKVPDPK 228

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQRE 437
           F+ QTK KLVS + +  VE+ + +    YL++NP +A  ++  +I+        R+ +  
Sbjct: 229 FSSQTKDKLVSSEVKPAVESLMGERLQEYLLENPNDAKIVVGKIIDAARAREAARKAREM 288

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
             RK A+    LPGKLADC +     +EL++VEG
Sbjct: 289 TRRKGALDLGGLPGKLADCQERDPALSELYLVEG 322


>gi|318066893|emb|CBY89158.1| DNA gyrase subunit B [Modicisalibacter tunisiensis]
          Length = 349

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 127/360 (35%), Positives = 190/360 (52%), Gaps = 16/360 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +T+ R   +  Q +  G+P +PL    + +   GTR+ FRP  + F +
Sbjct: 1   VSVVNALSEELKLTIWRAGQVHEQLYHHGVPDAPLTVVGETQK-SGTRVHFRPSAETFAN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V    + ++   E       E F++ GGL+ ++     
Sbjct: 60  I-EFHYDILAKRLRELSFLNSGVAIRLTDERSGKE-------ELFHYEGGLRAFVDHLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N+S ++           G     VE A+ W +     I  Y N I   +GGTH +G R A
Sbjct: 112 NKSTLNPVFHFEAQRPDGI---AVEVAMQWNDTFAENIFCYTNNIPQRDGGTHLAGFRAA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  +S   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRTLNHYIEAEGLSKKAKVSTSGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454
           VE  L   F  YL+++P EA  ++  +I+ +  R   RK R    RK A+    LPGKLA
Sbjct: 229 VEQELGREFSDYLIEHPNEAKSIVNKMIDAARAREAARKAREMTRRKGALDIAGLPGKLA 288

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 289 DCQEKDPSLSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 348


>gi|327200393|gb|AEA36076.1| DNA gyrase subunit B [Mesorhizobium huakuii]
          Length = 366

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 128/374 (34%), Positives = 194/374 (51%), Gaps = 21/374 (5%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL---------SPLEKKEKVR 200
           +SGGLHGVG+SVVNALS  L + + R   IF   F+ G               ++     
Sbjct: 1   VSGGLHGVGVSVVNALSAWLKLKIRRNGQIFEMSFTHGNADAPLKATGSYEQDKQPGTYE 60

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
            + G+ ITF P  + F     FD   L    +  A+L+  V+   +  +           
Sbjct: 61  GRSGSSITFFPSAETFT-MVEFDFGTLEHRLRELAFLNSGVRIILTDARHADIVRHE--- 116

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYC 319
              ++ GGL+ +++     +  +  +    K E+ G    TVE A+ W +   E   ++ 
Sbjct: 117 --LHYDGGLEEFVKYLDRVKKPLIEKPIAIKAERDGI---TVEVAMWWNDSYHENVLAFT 171

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH +G R ALTR I  Y E +    K  +S+I DD       +LSV + +P
Sbjct: 172 NNIPQRDGGTHLAGFRGALTRQITGYGESSGLTKKEKVSLIGDDCREGLTAVLSVKVPDP 231

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F+ QTK KLVS + +  VE  + +    +L ++P E   +++ VI+ +  R   RK R+
Sbjct: 232 KFSSQTKDKLVSSEVRPVVEGLVNEALGTWLEEHPTEGKVVIDKVIQAAAAREAARKARD 291

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
           + RK+++    LPGKLADC +     +E+FIVEGDSAGGSAK  R+R NQA+LPLRGKIL
Sbjct: 292 ITRKSSLGVTSLPGKLADCQERDPAKSEIFIVEGDSAGGSAKGGRSRQNQAILPLRGKIL 351

Query: 498 NVASAGSEKIRNNQ 511
           NV  A  +++  + 
Sbjct: 352 NVERARFDRMLGSD 365


>gi|307343786|emb|CBJ19498.1| gyrase B subunit [Micromonospora saelicesensis]
          Length = 363

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 109/368 (29%), Positives = 188/368 (51%), Gaps = 9/368 (2%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V + +  +++ Q ++   P +  +   +  +  G+ ++F PDP +F     FD   + + 
Sbjct: 2   VEIHKSGSVWRQHYTNSKPSALEK--GEATDSTGSAVSFWPDPDVFETV-DFDFQTIYRR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            Q  A+L+  ++     ++   E+ G   +  FY+ GG+  +++    ++S I   +   
Sbjct: 59  LQEMAFLNRALRIHLLDERVAEEEDGRQREVTFYYEGGIADFVRHLNASKSPIHKTVVEF 118

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
           + E++G    ++E A+ W E     + ++ NTI T EGGTHE G R ALT  + +Y    
Sbjct: 119 EAEEEG---MSLEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSVVNRYGTDK 175

Query: 350 QNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
           +  +    +  +D+      I+SV +  P+F GQTKTKL +   +  V+    D    + 
Sbjct: 176 KLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWF 235

Query: 409 VQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
            +NP EA  ++ +           ++ ++   RK+ +    +PGKLADC       +E+F
Sbjct: 236 DRNPAEAKMIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVF 295

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           IVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG      
Sbjct: 296 IVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGIHDD 355

Query: 528 YREEDLRY 535
           +  E LRY
Sbjct: 356 FDMEKLRY 363


>gi|318066859|emb|CBY89141.1| DNA gyrase subunit B [Halomonas maura]
          Length = 349

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 124/360 (34%), Positives = 190/360 (52%), Gaps = 16/360 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +T+ RQ  +  Q +  G+P  PL    K   + G+R+ F+P P+ F +
Sbjct: 1   VSVVNALSEELKLTIWRQGQVHEQIYHHGVPAGPLGVVGKT-EQTGSRVHFKPSPQTFHN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F++ GGLK ++     
Sbjct: 60  I-EFHYDVLAKRLRELSFLNSGVAIRLMDERSGKE-------ELFHYEGGLKAFVDHLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N+++++         + G     VE A+ W +     I  Y N I   +GGTH +G R +
Sbjct: 112 NKTVLNPVFHFNVEREDGV---GVEVAMQWNDTFAENIFCYTNNIPQRDGGTHLAGFRAS 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y +      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRTLNHYIDSEGLLKKTKVNTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  +   F  YLV+ P EA  ++  +++ +  R   RK      RK A+    LPGKLA
Sbjct: 229 VEQEMGRQFADYLVEKPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLA 288

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +ELF+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 289 DCQEKDPSLSELFLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 348


>gi|182407066|gb|ACB87633.1| DNA gyrase B subunit [Shewanella sp. FB18]
          Length = 348

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 116/359 (32%), Positives = 188/359 (52%), Gaps = 15/359 (4%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS++L +T+ R+  ++ Q ++ G+P +P++         GT I F P  + F D   F 
Sbjct: 1   ALSEKLQMTIRREGKLYEQFYTHGVPDAPIKAIGDAT-TTGTEIRFWPSGETFTDV-KFH 58

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L K  +  ++L+  V      +++  +       E F + GG+  ++     N++ +
Sbjct: 59  FDILAKRVRELSFLNSGVGIRLVDERDDPD-------EFFKYEGGISAFVDYLNGNKTPV 111

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
           + E+F    E++     TVE A+ W +     I  + N I   +GGTH +G R ALTR +
Sbjct: 112 NKEVFHFVQERED--GITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRSALTRNL 169

Query: 343 KKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             Y +      K   S   DD       ++SV + +P+F+ QTK KLVS + +  VE  +
Sbjct: 170 NTYMDREGFNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTM 229

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQN 459
            +    YL+++P EA  ++  +I  +  R   RK R+  R+   +    LPG LADC + 
Sbjct: 230 GEKLGDYLMEHPNEAKLIVGKIINAARARETARKARKRTRRKGPLDLSGLPGNLADCQEK 289

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                E++IVEGD AGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ 
Sbjct: 290 DPALFEIYIVEGDFAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 348


>gi|118201764|gb|ABK79695.1| DNA gyrase subunit b [Ketogulonicigenium vulgare]
          Length = 363

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 120/371 (32%), Positives = 188/371 (50%), Gaps = 17/371 (4%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF-----RPDPKIFG 217
           NALS+ L + + R    +  +F  G  +  ++       +RGT + F         +   
Sbjct: 1   NALSEWLELRIWRDGHEYHARFEHGNVVQHVKDLGPSDGERGTEVRFLAAVRVAANEGTF 60

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               +    L +  +  A+L+  V+     ++        P K E Y+ GG++ +++   
Sbjct: 61  SNLEYSYDVLERRLRELAFLNSGVRIVLEDER-----PAQPLKTELYYDGGVREFVKYLD 115

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRV 336
            +++ I  E      E+ G     VE A+ W +   E    + N I   +GGTH +G R 
Sbjct: 116 RSKTAIMPEPIFMVGERAGI---GVEVAMWWNDSYHENVLPFTNNIPQRDGGTHIAGFRA 172

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I KYA+ +    K  I +  DD       +LSV + +P+F+ QTK KLVS + + 
Sbjct: 173 ALTRTITKYAQDSGIAKKEKIDLTGDDAREGMTCVLSVKVPDPKFSSQTKDKLVSSEVRP 232

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            VEN + +    +  +NP  A  ++  +IE ++ R   RK RE   RK+A+    + GKL
Sbjct: 233 AVENLVGEKLAEWFEENPQMARMIVGKIIEAAQAREAARKARELTRRKSALDVNFMAGKL 292

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
            DC++     TELFIVEGDSAGGSA+  R+R  QA+LPLRGKILNV  A  +++ ++ +I
Sbjct: 293 KDCAEKDPSKTELFIVEGDSAGGSAQMGRDRLTQAILPLRGKILNVERARFDRMLSSAEI 352

Query: 514 MDLVQALGCRT 524
            +LV ALG   
Sbjct: 353 GNLVMALGTGI 363


>gi|15551701|emb|CAC69415.1| DNA gyrase B subunit [Serratia entomophila]
          Length = 323

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 104/334 (31%), Positives = 174/334 (52%), Gaps = 15/334 (4%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG+SVVNALS++L + + R+  +  Q +  G+P +PL+   +   
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYGHGVPQAPLKVVGET-E 59

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           + GT + F P  + F +   F+   L K  +  ++L+  V       +   E       +
Sbjct: 60  QTGTMVRFWPSHQTFTNVTDFEYDILAKRLRELSFLNSGVSIRLKDMRSDRE-------D 112

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F++ GG+K +++   +N++ I   +F   T K       VE A+ W +     I  + N
Sbjct: 113 HFHYEGGIKAFVEYLNKNKTPIHPNVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTN 169

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I   +GGTH  G R A+TR +  Y E      K  +S   DD     + ++SV + +P+
Sbjct: 170 NIPQRDGGTHLVGFRTAMTRTLNSYMEKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPK 229

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQRE 437
           F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+        R+ +  
Sbjct: 230 FSSQTKDKLVSSEVKTAVETLMNEKLVDYLMENPSDAKIVVGKIIDAARAREAARKAREM 289

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
             RK A+    LPGKLADC +     +EL++VEG
Sbjct: 290 TRRKGALDLAGLPGKLADCQERDPALSELYLVEG 323


>gi|327200397|gb|AEA36078.1| DNA gyrase subunit B [Mesorhizobium tianshanense]
          Length = 366

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 126/374 (33%), Positives = 193/374 (51%), Gaps = 21/374 (5%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL---------SPLEKKEKVR 200
           +SGGLHGVG+SVVNALS  L + + R   IF   F+ G               +      
Sbjct: 1   VSGGLHGVGVSVVNALSAWLKLKIRRNGQIFEMSFTHGNADAPLKVTGSYEQHKVAGTYE 60

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
            + G+ ITF P  + F     FD   L    +  A+L+  V+   +  +           
Sbjct: 61  GRSGSEITFFPSTETFT-MVEFDFGTLEHRLRELAFLNSGVRILLTDARHADVVRHE--- 116

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYC 319
              ++ GGL+ +++     +  +  +    K E+ G    TVE A+ W +   E   ++ 
Sbjct: 117 --LHYDGGLEEFVKYLDRVKKPLIDKPIAIKAERDGI---TVEVAMWWNDSYHENVLAFT 171

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH +G R ALTR I  Y + +    K  +++I DD       +LSV + +P
Sbjct: 172 NNIPQRDGGTHLAGFRGALTRQITGYGDSSGLTKKEKVALIGDDCREGLTAVLSVKVPDP 231

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F+ QTK KLVS + +  VE  + +    +L ++P E   +++ VI+ +  R   RK R+
Sbjct: 232 KFSSQTKDKLVSSEVRPVVEGLVNEALGTWLEEHPAEGKVVIDKVIQAAAAREAARKARD 291

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
           + RK+++    LPGKLADC +     +E+FIVEGDSAGGSAK  R+R NQA+LPLRGKIL
Sbjct: 292 ITRKSSLGVTSLPGKLADCQERDPAKSEIFIVEGDSAGGSAKGGRSRQNQAILPLRGKIL 351

Query: 498 NVASAGSEKIRNNQ 511
           NV  A  +++  + 
Sbjct: 352 NVERARFDRMLGSD 365


>gi|66271236|gb|AAY43831.1| DNA gyrase subunit B [Vibrio diazotrophicus]
          Length = 337

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 117/347 (33%), Positives = 185/347 (53%), Gaps = 14/347 (4%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+++ +T+ R   I +Q +  G+P +PL          GT + F P
Sbjct: 1   GGLHGVGVSVVNALSEKVLLTIYRGGHIHTQTYRHGVPQAPLSVVGDTEK-TGTTVRFWP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
               F +   F    L K  +  ++L+  V      ++E        +++ F + GG++ 
Sbjct: 60  SADTFTN-IEFHYDILAKRLRELSFLNSGVSIKLIDERE------EDKQDHFMYEGGIQA 112

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++     N++ I  ++F   +E++     +VE A+ W +     I  + N I   +GGTH
Sbjct: 113 FVTHLNRNKTPIHEKVFHFNSERED--GISVEVAMQWNDGFQEGIYCFTNNIPQRDGGTH 170

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  Y +      K   +   DD       ++SV + +P+F+ QTK KLV
Sbjct: 171 LAGFRAALTRTLNTYMDKEGYSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 230

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE+A+ +  + +L ++P EA  +   +I+        R+ +    RK A+   
Sbjct: 231 SSEVKSAVESAMGEKLNEFLAEHPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLA 290

Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
            LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 291 GLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 337


>gi|220680518|dbj|BAH10748.1| DNA gyrase subunit B [Nocardia cummidelens]
 gi|220680528|dbj|BAH10753.1| DNA gyrase subunit B [Nocardia fluminea]
 gi|220680568|dbj|BAH10773.1| DNA gyrase subunit B [Nocardia soli]
 gi|220680592|dbj|BAH10785.1| DNA gyrase subunit B [Nocardia salmonicida]
          Length = 400

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 117/406 (28%), Positives = 193/406 (47%), Gaps = 34/406 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS ++ V +      ++Q +    P    +   +     GT + F  DP IF     +
Sbjct: 1   NALSTKVEVEIDVDGYHWTQTYKDAKPGKLAQ--GEATKATGTTVRFWADPDIFETTT-Y 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDK------------------------EIAEKYGIP 258
           +   + +  Q  A+L+  +    + ++                                 
Sbjct: 58  NFETVARRLQEMAFLNKGLTIKLTDERVAVGDVIDEVVSETAEAPKDAEVVAAEAAEHKV 117

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +   +++PGGL  +++     +S I + +     +  G     +E A+ W       + +
Sbjct: 118 KTRTYHYPGGLVDFVRHINRTKSAIHNSVVGYTVKGTGH---ELEVAMQWNSGYSESVHT 174

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIR 375
           + NTI T EGGTHE G R ALT  + KYA+  +  +    ++  DD+      I+SV + 
Sbjct: 175 FANTINTHEGGTHEEGFRAALTTVVNKYAKEKKLLKEKDGNLTGDDIREGLAAIVSVKVG 234

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  +++  +  ++ R+  RK 
Sbjct: 235 EPQFEGQTKTKLGNTEVKSFVQRACNEHLQHWFEANPADAKTIVQKAVSSAQARMAARKA 294

Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE V RK+A     LPGKLADC        E++IVEGDSAGGSAK  R+   QA+LPLRG
Sbjct: 295 RELVRRKSATDLGGLPGKLADCRSKDPGKCEIYIVEGDSAGGSAKSGRDSMYQAILPLRG 354

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           KI+NV  A  +++  N ++  ++ A G     ++    LRY K+I+
Sbjct: 355 KIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYNKIIL 400


>gi|318066867|emb|CBY89145.1| DNA gyrase subunit B [Halomonas pacifica]
          Length = 349

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 127/360 (35%), Positives = 190/360 (52%), Gaps = 16/360 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +TV R   +  Q +  G+P +PL    K   + GTR+ FRP P+ F +
Sbjct: 1   VSVVNALSEELKLTVWRAGQVHEQIYRHGVPEAPLSVVGKT-EQSGTRVHFRPSPETFAN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F++ GGLK ++     
Sbjct: 60  I-EFHYDILAKRLRELSFLNSGVAIRLIDERSGKE-------ELFHYEGGLKAFVNHLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N+S ++S        + G     VE A+ W +     I  Y N I   +GGTH +G R A
Sbjct: 112 NKSTLNSVFHFNVEREDGV---GVEVAMQWNDTFAENIFCYTNNIPQRDGGTHLAGFRAA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRTLNGYIEAEGLLKKAKVNTSGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  +   F  YL+++P EA  ++  +++ +  R   RK      RK A+    LPGKL 
Sbjct: 229 VEQEMGRLFSEYLIEHPNEAKAVVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLV 288

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 289 DCQEKDPSLSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 348


>gi|318066825|emb|CBY89124.1| DNA gyrase subunit B [Halomonas anticariensis]
          Length = 349

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 126/360 (35%), Positives = 189/360 (52%), Gaps = 16/360 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +T+ R   ++ Q +  G+P +PL    K     GTR+ FRP P  FG+
Sbjct: 1   VSVVNALSEELKLTIWRAGQVYEQIYHHGVPEAPLGVVGKTEK-SGTRVHFRPSPLTFGN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F++ GGLK ++     
Sbjct: 60  I-EFHYDILAKRLRELSFLNSGVAIRLLDERSGKE-------ELFHYEGGLKAFVDHLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++         + G     VE A+ W +     I  Y N I   +GGTH +G R +
Sbjct: 112 NKTTLNPVFHFDAQREDGV---GVEVAMQWNDTFAENIFCYTNNIPQRDGGTHLAGFRAS 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRTLNSYIEAEGLLKKTKVNTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  +   F  YLV+ P EA  ++  +++ +  R   RK      RK A+    LPGKLA
Sbjct: 229 VEQEMGRMFSEYLVERPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLA 288

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 289 DCQEKDPSLSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 348


>gi|318066809|emb|CBY89116.1| DNA gyrase subunit B [Chromohalobacter israelensis]
 gi|318066815|emb|CBY89119.1| DNA gyrase subunit B [Chromohalobacter salexigens]
          Length = 349

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 125/360 (34%), Positives = 189/360 (52%), Gaps = 16/360 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +TV R   ++ Q +  G+P SPL+   K     GT++ F+P  + F +
Sbjct: 1   VSVVNALSEELKLTVWRAGQVYEQIYHHGVPDSPLDVVGKTEK-SGTQVNFKPSTETFAN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++  AE       E F++ GGL+ ++     
Sbjct: 60  I-EFHYDILAKRLRELSFLNSGVAIRLIDERSGAE-------ELFHYEGGLRAFVDHLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++           G     VE A+ W +     I  Y N I   +GGTH +G R A
Sbjct: 112 NKTALNQIFHFETQRDDGI---AVEVAMQWNDTFSENIFCYTNNIPQHDGGTHLAGFRAA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRTLNHYIESEGLLKKAKVNTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  +   F  YLV+ P EA  ++  +++ +  R   RK      RK A+    LPGKLA
Sbjct: 229 VEQEMGRQFSDYLVERPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLA 288

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 289 DCQEKDPSLSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 348


>gi|318066865|emb|CBY89144.1| DNA gyrase subunit B [Halomonas organivorans]
          Length = 349

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 123/360 (34%), Positives = 189/360 (52%), Gaps = 16/360 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +T+ R   +  Q +  G+P +PL    K   + G+R+ F+P P+ F +
Sbjct: 1   VSVVNALSEELKLTIWRNGQVHEQVYRHGVPQAPLGVVGKT-EQTGSRVHFKPSPETFHN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F++ GGLK ++     
Sbjct: 60  I-EFHYDVLAKRLRELSFLNSGVAIRLMDERSGKE-------ELFHYEGGLKAFVDHLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N+++++         + G     VE A+ W +     I  Y N I   +GGTH +G R A
Sbjct: 112 NKTVLNPVFHFNVEREDGV---GVEVAMQWNDTFAENIFCYTNNIPQRDGGTHLAGFRAA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y +      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRSLNHYIDAEGLLKKAKVNTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  +      YLV+ P EA  ++  +++ +  R   RK      RK A+    LPGKLA
Sbjct: 229 VEQEMGRQLSEYLVERPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLA 288

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +ELF+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 289 DCQEKDPSLSELFLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 348


>gi|66474611|gb|AAY46875.1| GyrB [Aeromonas veronii bv. sobria]
          Length = 371

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 129/382 (33%), Positives = 198/382 (51%), Gaps = 16/382 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P 
Sbjct: 1   HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPA 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFSDTL-FHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------AHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    +  +SV +  P+F+ QTK  LVS +
Sbjct: 169 FRTALTRTLNSYMDKEDYSKKAKSAASGDDVREDLIAGISVTVPHPKFSSQTKDTLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLP 450
            +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK REV R+   +     P
Sbjct: 229 VKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKAREVTRRKGPLDIKFEP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           GK A+   N    +EL IVE D  GGSAKQ RNR NQA+LP +GKILNV  AG +K+ ++
Sbjct: 289 GKEAEFLYNNPVLSELHIVERDYNGGSAKQGRNRKNQAILPSKGKILNVEKAGFDKMISS 348

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q++  L+ ALG          D
Sbjct: 349 QEVGTLITALGRSIGRDEHNPD 370


>gi|62944554|gb|AAY22125.1| DNA gyrase subunit B [Zymomonas mobilis subsp. mobilis]
          Length = 348

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 112/358 (31%), Positives = 191/358 (53%), Gaps = 14/358 (3%)

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALSD L +TV R       +F  G+ + PL+      +KRGTR+ F P  + F   
Sbjct: 1   SVVNALSDYLELTVWRDGQEHRMRFEHGVAVEPLKVVG-ASDKRGTRVRFHPSAETFK-I 58

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+  +L    +  A+L+  V+   +  +   EK         ++ GG+  +++     
Sbjct: 59  TEFNFEKLEHRYRELAFLNSGVRLQLTDKRTDPEKTVE-----LFYEGGIAAFVKWLDRA 113

Query: 280 RSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
           ++ +  E      ++        +EW  ++     ++  + N I   +GGTH +  R AL
Sbjct: 114 KTALIPEPVAIHGDRDDVMIDVALEWNDSY---YEQVLCFTNNIPQRDGGTHLAAFRAAL 170

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  YA+ +    K  + +  DD+      I+SV + +P+F+ QTK KLVS + ++ +
Sbjct: 171 TRTLNNYADKSGLLKKEKVQLTGDDMREGLTAIISVKLPDPKFSSQTKDKLVSSEVRQPL 230

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLAD 455
           E+ + D    +L +NP  A  +++ +I+ +  R   ++ RE+ R+   +    LPGKLAD
Sbjct: 231 ESLMADKMAEWLEENPAHAKVIIQKIIDAAAAREAAKRARELTRRKGVMDIASLPGKLAD 290

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           C +     +E+FIVEGDSAGGSAKQ RNR NQA+LPL+GKILN   +  +++ +++++
Sbjct: 291 CQERDPTKSEIFIVEGDSAGGSAKQGRNRHNQAILPLKGKILNTERSRLDRMLSSKEV 348


>gi|328725424|ref|XP_003248474.1| PREDICTED: DNA gyrase subunit B-like, partial [Acyrthosiphon pisum]
          Length = 619

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 117/346 (33%), Positives = 182/346 (52%), Gaps = 12/346 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L V V   N I+ Q + RG+P   L+      +  GT I F+ D +IF +   +
Sbjct: 1   NALSSNLEVYVHLNNKIYHQAYERGVPAFDLKVIGDT-DHTGTTIRFKADGEIFTETTEY 59

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L K  +  A+L+  ++     +++        +++ +++ GG+K+Y++   +++ +
Sbjct: 60  DYETLQKRIRELAFLNKGIQISLRDERDDENI----QEDSYHYEGGIKSYVEMLNKSKEV 115

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +  E       K       VE AI +       + +Y N I T EGGTHE G + ALTR 
Sbjct: 116 LYDEPIYIHDTKDDV---EVEIAIQYNNGFATNLLTYANNIHTYEGGTHEDGFKRALTRV 172

Query: 342 IKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  Y    +  +     +  +D+      ++SV   +P+F GQTKTKL + + ++ V+  
Sbjct: 173 INSYGIKNKLLKEGEEKLSGEDVREGMTAVVSVKHGDPQFEGQTKTKLGNSEVRQIVDKL 232

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
             + F+ +L++NP  A  +++  +  S  RL  +K RE   RK+A+    LPGKLADCS 
Sbjct: 233 FSELFERFLLENPNVARIIVDKGVMASRARLAAKKAREVTRRKSALEVSSLPGKLADCSS 292

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
                 EL+IVEGDSAGGSAK  R+   QA+LPLRGKILNV  A  
Sbjct: 293 KKPEECELYIVEGDSAGGSAKLRRDSKTQAILPLRGKILNVEKARL 338


>gi|237769791|dbj|BAH59416.1| DNA gyrase subunit B [Nocardia alba]
          Length = 400

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 118/406 (29%), Positives = 193/406 (47%), Gaps = 34/406 (8%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS ++ V +      +SQ +    P    +   +     GT + F  DP IF     +
Sbjct: 1   NALSTKVEVEIDVDGYHWSQTYKDAKPGKLAQ--GEATKATGTTVRFWADPDIFETTT-Y 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDK------------------------EIAEKYGIP 258
           +   + +  Q  A+L+  +    + ++                                 
Sbjct: 58  NFETVARRLQEMAFLNKGLTIKLTDERVAVGDVIDEVVSETAEAPKDAEVVAAEAAEHKV 117

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           +   +++PGGL  +++     +S I + +     +  G     +E A+ W       + +
Sbjct: 118 KTRTYHYPGGLVDFVRHINRTKSAIHNSVVGYTVKGTGH---ELEVAMQWNSGYSESVHT 174

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIR 375
           + NTI T EGGTHE G R ALT  + KYA+  +  +    ++  DD+      I+SV + 
Sbjct: 175 FANTINTHEGGTHEEGFRAALTTVVNKYAKEKKLLKEKDGNLTGDDIREGLAAIVSVKVG 234

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           EP+F GQTKTKL + + +  V+ A  +   H+   NP +A  +++  +  ++ R+  RK 
Sbjct: 235 EPQFEGQTKTKLGNTEVKSFVQRACNEHLQHWFEANPADAKTIVQKAVSSAQARMAARKA 294

Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE V RK+A     LPGKLADC        E++IVEGDSAGGSAK  R+   QA+LPLRG
Sbjct: 295 RELVRRKSATDLGGLPGKLADCRSKDPGKCEIYIVEGDSAGGSAKSGRDSMYQAILPLRG 354

Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           KI+NV  A  +++  N ++  ++ A G     ++    LRY K+I+
Sbjct: 355 KIINVEKARIDRVLKNNEVQSIITAFGTGIHDEFDIAKLRYNKIIL 400


>gi|199974937|gb|ACH92123.1| DNA gyrase subunit B [Thiothrix sp. CT3]
          Length = 368

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 136/379 (35%), Positives = 195/379 (51%), Gaps = 16/379 (4%)

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS  L +T+ R   +  Q +  G P++PL          GT + F P  +IF     
Sbjct: 1   VNALSANLELTIRRNGKLHQQMYKLGDPVAPLAIIGDTEG-TGTSVRFWPSAEIFALT-E 58

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F    L K  +  ++L+  V+      +          ++ F + GG+K ++     N+S
Sbjct: 59  FHYDILAKRLRELSFLNSGVRIHLIDRRG------EGREDIFEYEGGIKAFVAHLNRNKS 112

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I + I    TE+       VE A+ W +     I  Y N I   +GG+H SG R ALTR
Sbjct: 113 PIHNNIIYFTTERDDV---GVEVALQWNDSYQENIYCYTNNIPQRDGGSHLSGFRAALTR 169

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +  Y E      K  IS   DD       +LSV + +P+F+ QTK KLVS + +  VE 
Sbjct: 170 TLNSYIESAGLAKKEKISPTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKGIVEA 229

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCS 457
           A+ +    +L+++P EA  +   +IE +  R   RK      RK A+    LPGKLADC 
Sbjct: 230 AMNERLGEFLLESPSEAKLIAGKMIEAARAREAARKARDMTRRKGALDIAGLPGKLADCQ 289

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
           +     +ELF+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++Q++  L+
Sbjct: 290 EKDPALSELFLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVERARFDKMISSQEVGTLI 349

Query: 518 QALGCRT-RSQYREEDLRY 535
            ALGC   R +Y  E LRY
Sbjct: 350 IALGCGIGREEYNIEKLRY 368


>gi|318066877|emb|CBY89150.1| DNA gyrase subunit B [Halomonas variabilis]
          Length = 349

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 129/360 (35%), Positives = 189/360 (52%), Gaps = 16/360 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS EL +T+ RQ  +F Q +  G+P +PL    K     GTR+ FRP P+ FG+
Sbjct: 1   VSVVNALSAELRLTIWRQGEVFEQMYHHGVPQAPLGVVGKTEK-SGTRVHFRPSPETFGN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F++ GGLK ++     
Sbjct: 60  I-EFHFDILAKRLRELSFLNSGVAIRLMDERSGKE-------ELFHYEGGLKAFVDHLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N+S+I+         + G     VE A+ W E     I  Y N I   +GG H +G R  
Sbjct: 112 NKSVINPVFHFNAIREDGV---EVEVAMQWSEAFTENIFCYTNNIPQRDGGAHLAGFRSG 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRTLNNYIEAENLLKKAKVNTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           V+  +   F  YLV+ P EA  ++  +++ +  R   RK      RK A+    LPGKLA
Sbjct: 229 VDQEMSRLFSEYLVEKPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLA 288

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 289 DCQEKDPSQSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 348


>gi|34786040|gb|AAH57873.1| Top2a protein [Mus musculus]
          Length = 345

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 63/340 (18%), Positives = 120/340 (35%), Gaps = 51/340 (15%)

Query: 27  GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTD---------------- 70
            +  +       S    Y          LE + +RP  YIG  +                
Sbjct: 16  NKKKNEDGKKRLSIERIYQKK-----TQLEHILLRPDTYIGSVELVTQQMWVYDEDVGIN 70

Query: 71  ------EKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGIPVENHP 122
                    L+ +F E++ NA D        + I V++D  N  +++ +NG+GIPV  H 
Sbjct: 71  YREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNVISIWNNGKGIPVVEH- 129

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTV--ARQNTIF 180
           K        +I   L     +D+   +++GG +G G  + N  S +  V         +F
Sbjct: 130 KVEKIYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMF 189

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLLKMTQSKAYLS 238
            Q +   +  +   + +    +  T ITF+PD   F  +       A +++     A  +
Sbjct: 190 KQTWMDNMGRAGDMELKPFSGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGST 249

Query: 239 GRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH 298
             VK   + +    +              G ++Y+   L+++   +        E+    
Sbjct: 250 KDVKVFLNGNSLPVK--------------GFRSYVDLYLKDKVDETGNSLKVIHEQ---V 292

Query: 299 RGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
               E  +   E   +  S+ N+I T +GG H   +   +
Sbjct: 293 NPRWEVCLTMSERGFQQISFVNSIATSKGGRHVDYVADQI 332


>gi|318066897|emb|CBY89160.1| DNA gyrase subunit B [Salinicola salarius]
          Length = 349

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 124/360 (34%), Positives = 191/360 (53%), Gaps = 16/360 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS++L +T+ R N +  Q +  G+P +PL    +     GT+I+F+P    F +
Sbjct: 1   VSVVNALSEQLKLTIWRNNQVHEQIYHHGVPQAPLSVVGETEK-SGTQISFKPSSDTFAN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      +++  E       E F++ GGLK ++     
Sbjct: 60  I-EFHYDILAKRLRELSFLNSGVAIRLVDERDGRE-------ELFHYEGGLKAFVDHLNV 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           NR+ ++         + G     VE A+ W +     +  Y N I   +GGTH +G R A
Sbjct: 112 NRTALNPVFHFEAQREDGI---VVEVAMQWNDTFAENVFCYTNNIPQRDGGTHMAGFRAA 168

Query: 338 LTRGIKKYAE--LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E    Q K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRTLNSYIEAEDIQKKAKVATAGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           V+  L   F  YL+++P EA  ++  +I+ +  R   RK      RK A+    LPGKLA
Sbjct: 229 VDQELSRQFSDYLIEHPNEAKAIVNKMIDAARAREAARKARDMTRRKGALDIAGLPGKLA 288

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 289 DCQEKDPSLSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 348


>gi|148762407|dbj|BAF63905.1| DNA gyrase subunit B [Virgibacillus halodenitrificans]
          Length = 325

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 113/336 (33%), Positives = 165/336 (49%), Gaps = 15/336 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG SVVNALS  + V V   N I    F +G+P   +E   +  +  GT +
Sbjct: 1   YKVFGGLHGVGASVVNALSTRMEVHVHLDNKIHFLAFEKGVPQGEIEVVGET-DVTGTTV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F PDP+IF +   +    L +  +  A+L+  +       +   E+     K E     
Sbjct: 60  HFIPDPEIFTETTEYQFDILAQRLRELAFLNKGITITIEDKRTGEEQSATIMKAESVRMW 119

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDE 326
            + T  +             F  + E++G     VE AI + +        + N I T E
Sbjct: 120 SISTVQKKYFM-------PRFYSEGEEEGI---AVEVAIQYNDGFSSNLYSFANNIHTYE 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTHESG R  LTR I  YA      +    ++  +D+      I+SV   +P+F GQTK
Sbjct: 170 GGTHESGFRTGLTRVINDYARKNNLFKENDPNLSGEDVREGLTAIVSVKHPDPQFEGQTK 229

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
           TKL + + +   ++   + F  +L +NP     ++E  +  S  R+  +K RE   RK+A
Sbjct: 230 TKLGNSEVRSVTDSIFSETFSKFLFENPTVGKIIVEKGLMASRARMAAKKARELTRRKSA 289

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADCS   A  +EL+IVEGDSAGGSAK
Sbjct: 290 LEISNLPGKLADCSSKDAKISELYIVEGDSAGGSAK 325


>gi|318066895|emb|CBY89159.1| DNA gyrase subunit B [Salinicola halophilus]
          Length = 349

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 125/360 (34%), Positives = 191/360 (53%), Gaps = 16/360 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS++L +T+ R+N +  Q +  G+P +PL          GT+I F+P  + F +
Sbjct: 1   VSVVNALSEQLKLTIWRKNQVHEQIYRHGVPQAPLAVVGDTEK-SGTQINFKPSSETFAN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      +++  E       E F++ GGLK ++     
Sbjct: 60  I-EFHYDILAKRLRELSFLNSGVAIRLMDERDGRE-------ELFHYEGGLKAFVDHLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           NR+ ++         + G     VE A+ W +     +  Y N I   +GGTH +G R A
Sbjct: 112 NRTALNPVFHFSMQREDGI---GVEVAMQWNDTFAENVYCYTNNIPQRDGGTHMAGFRAA 168

Query: 338 LTRGIKKYAE--LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E    Q K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRTLNSYIEAEDIQKKAKVATAGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           V+  L   F  YLV++P EA  ++  +I+ +  R   RK      RK A+    LPGKLA
Sbjct: 229 VDQELSRQFSDYLVEHPGEAKSIVNKMIDAARAREAARKARDMTRRKGALDIAGLPGKLA 288

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 289 DCQEKDPSLSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 348


>gi|118201762|gb|ABK79694.1| DNA gyrase subunit b [Ketogulonicigenium robustum]
          Length = 363

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 124/371 (33%), Positives = 189/371 (50%), Gaps = 17/371 (4%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD-----PKIFG 217
           NALSD L + + R    +  +F  G  +  +E       +RGT + F         +   
Sbjct: 1   NALSDWLELRIWRDGHEYHARFEHGDVVKHVEDLGPSDGERGTEVRFLASVRTGPNEGTF 60

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               +    L +  +  A+L+  V+     ++        P K E Y+ GG++ +++   
Sbjct: 61  SNLEYSYDVLERRLRELAFLNSGVRIVLEDER-----PAQPLKTELYYEGGVREFVKYLD 115

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRV 336
            +++ I  +      E+ G     VE A+ W +   E    + N I   +GGTH +G R 
Sbjct: 116 RSKTSIMPDPIFMTGERGGI---GVEVAMWWNDSYHENVLPFTNNIPQRDGGTHIAGFRA 172

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I KYA+ T    K  I +  DD       +LSV + +P+F+ QTK KLVS + + 
Sbjct: 173 ALTRTITKYAQDTGIAKKEKIDLTGDDAREGMTCVLSVKVPDPKFSSQTKDKLVSSEVRP 232

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            VEN + +    +  +NP  A  ++  +IE ++ R   RK RE   RKTA+    + GKL
Sbjct: 233 AVENLVGEKLSEWFEENPQMARMIVGKIIEAAQAREAARKARELTRRKTALDVNFMAGKL 292

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
            DC++  A  TELFIVEGDSAGGSA+  R+R  QA+LPLRGKILNV  A  +++ ++ +I
Sbjct: 293 KDCAEKDASKTELFIVEGDSAGGSAQMGRDRRTQAILPLRGKILNVERARFDRMLSSAEI 352

Query: 514 MDLVQALGCRT 524
            +LV ALG   
Sbjct: 353 GNLVMALGTGI 363


>gi|318066881|emb|CBY89152.1| DNA gyrase subunit B [Halomonas venusta]
          Length = 349

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 128/360 (35%), Positives = 191/360 (53%), Gaps = 16/360 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +T+ RQ  +F Q +  G+P +PL    K     GTR+ FRP P  F +
Sbjct: 1   VSVVNALSEELRLTIWRQGEVFEQVYQHGVPQAPLGIVGKTEK-SGTRVHFRPSPNTFAN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F++ GGLK ++    +
Sbjct: 60  I-EFHYDILAKRLRELSFLNSGVAIRLMDERSGKE-------ELFHYEGGLKAFVDHLNK 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N+++++         + G     VE A+ W E     I  Y N I   +GGTH +G R A
Sbjct: 112 NKTVLNPVFHFNAVREDGV---EVEVAMQWSEAFTENIFCYTNNIPQRDGGTHLAGFRAA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRTLNHYIEAQGLLKKSKVNTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  +   F  YL++ P EA  ++  +++ +  R   RK      RK A+    LPGKLA
Sbjct: 229 VEQEMGRLFADYLIEKPNEAKSIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLA 288

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 289 DCQEKDPSQSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 348


>gi|118201816|gb|ABK79721.1| DNA gyrase subunit b [Sulfitobacter guttiformis]
          Length = 356

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 123/366 (33%), Positives = 180/366 (49%), Gaps = 14/366 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALSD L + V R       +F  G     LE   K  ++ GT + F      F +   +
Sbjct: 1   NALSDWLELRVWRDGHEHIARFEGGYTTKHLETLGKT-DRTGTEVRFLASLSTFSNL-EY 58

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  A+L+  VK     ++          +   Y+ GG+K +++    N+S 
Sbjct: 59  SFETLEKRLRELAFLNSGVKIILRDER-----PDEALETVLYYDGGVKEFVKYLDRNKSS 113

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           I  E      EK       VE A+ W +   E    + N I   +GGTH +G R ALTR 
Sbjct: 114 ILPEPIFITGEKDDI---GVEVAMWWNDSYHENVLPFTNNIPQRDGGTHMAGFRGALTRT 170

Query: 342 IKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  YA+ +   +        DD       +LSV + +P+F+ QTK KLVS + +  VE  
Sbjct: 171 INNYAQSSGIAKREKVTFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGL 230

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    +  +NP  A  ++  +IE +  R   RK R+   RKTA+    L GKL DCS+
Sbjct: 231 VNEKLAEWFEENPQIAKIVVGKIIEAAHAREAARKARDLTRRKTAMDVNFLAGKLKDCSE 290

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TE+F+VEGDSAGGSA+  R+R  QA+LPL+GKILNV  A  +++  +Q+I +LV 
Sbjct: 291 KDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVM 350

Query: 519 ALGCRT 524
           ALG   
Sbjct: 351 ALGTGI 356


>gi|13487309|gb|AAK27487.1|AF343324_1 DNA gyrase B [Cycloclasticus sp. NOP-122E1]
 gi|13487313|gb|AAK27489.1|AF343326_1 DNA gyrase B [Cycloclasticus sp. NOP-122J1]
 gi|13487315|gb|AAK27490.1|AF343327_1 DNA gyrase B [Cycloclasticus sp. N-112A1]
 gi|13487325|gb|AAK27495.1|AF343332_1 DNA gyrase B [Cycloclasticus sp. 2N-232]
 gi|13487327|gb|AAK27496.1|AF343333_1 DNA gyrase B [Cycloclasticus sp. P-CE61]
 gi|13487329|gb|AAK27497.1|AF343334_1 DNA gyrase B [Cycloclasticus pugetii PS-1]
 gi|13487331|gb|AAK27498.1|AF343335_1 DNA gyrase B [Cycloclasticus sp. P-CE721]
 gi|13487333|gb|AAK27499.1|AF343336_1 DNA gyrase B [Cycloclasticus sp. N2-PA2-222]
 gi|13487335|gb|AAK27500.1|AF343337_1 DNA gyrase B [Cycloclasticus sp. N2-PA9-2-2]
 gi|13487337|gb|AAK27501.1|AF343338_1 DNA gyrase B [Cycloclasticus sp. N2-PA8-1]
 gi|13487339|gb|AAK27502.1|AF343339_1 DNA gyrase B [Cycloclasticus sp. N2-PA8-2]
 gi|13487341|gb|AAK27503.1|AF343340_1 DNA gyrase B [Cycloclasticus sp. P-1P31]
 gi|13487343|gb|AAK27504.1|AF343341_1 DNA gyrase B [Cycloclasticus sp. P-1P32]
          Length = 362

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 129/366 (35%), Positives = 199/366 (54%), Gaps = 17/366 (4%)

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           + +G P+ PL+         GT + F+P    F +   F    L K  +  ++L+  V+ 
Sbjct: 9   YKKGEPVEPLKVVGPTEK-TGTSLRFKPSIGTFSNI-EFHFDLLAKRLRELSFLNSGVRI 66

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
             S ++   E       E F + GG+K ++    +N+S I   I     +K       VE
Sbjct: 67  RLSDERTAKE-------EIFEYEGGIKAFVNHLNKNKSQIHENIIYINVDKNDV---NVE 116

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISD 360
            A+ W +     I  Y N I   +GGTH +G R  LTR + +Y E +    K+ ++   D
Sbjct: 117 VALQWNDSYQENIFCYTNNIPQRDGGTHLAGFRAGLTRTLNQYIEGSGLAKKQKVTTSGD 176

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D       +LSV + +P+F+ QTK KLVS + +  VE++L +    +L++NP EA ++  
Sbjct: 177 DAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKSIVESSLAEALQEFLLENPTEAKEIAG 236

Query: 421 WVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
            ++E +  R   RK      RK+A+    LPGKLADC +     +E+F+VEGDSAGGSAK
Sbjct: 237 KMLEAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKDPALSEIFLVEGDSAGGSAK 296

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
           Q R+R  QA+LPL+GKILNV  A  +K+ ++ ++  L+ ALGC   + +Y+ E+LRY K+
Sbjct: 297 QGRDRRTQAILPLKGKILNVEKARFDKMLSSDEVGTLITALGCGIGKEEYKPENLRYHKI 356

Query: 539 IIMTDA 544
           IIMTDA
Sbjct: 357 IIMTDA 362


>gi|317420216|emb|CBW30265.1| gyrase subunit B [Psychrobacter fozii]
          Length = 377

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 124/376 (32%), Positives = 199/376 (52%), Gaps = 16/376 (4%)

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L + + R+   ++Q ++ G+P + +++ E   N+ GT+I F P   +F    
Sbjct: 10  VVNALSKKLEMNIWREGYHYNQTYTDGVPDADIQQMEAT-NQTGTQIRFYPSSDVFTGTI 68

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F+   L K  +  ++L+  V+   + ++       I ++ EF   GGL  ++      +
Sbjct: 69  -FEYDILAKRLRELSFLNSGVRIVLTDER-------IDKRHEFEHKGGLLEFVSYINAGK 120

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
             ++        +  G    +VE A+ W +    ++  + N I   +GGTH SG R ALT
Sbjct: 121 DGVNEVFHFTSQQDDGI---SVEVALQWTDTYNEKVLCFTNNIPQKDGGTHLSGFRSALT 177

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  Y +      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  VE
Sbjct: 178 RCLNSYMDRENLFKKEKVAATGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVE 237

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADC 456
           +A+ D F+ YL++NP     +   +I+ +  R   RK      RKT +    LPGKLADC
Sbjct: 238 SAMHDKFNDYLLENPSAGKAIASKIIDAARARDAARKAREMTRRKTTLDIAGLPGKLADC 297

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            +     +EL+IVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ +L
Sbjct: 298 QEKDPVLSELYIVEGDSAGGSAKQGRSRKTQAILPLKGKILNVERARFDKMLSSAEVGNL 357

Query: 517 VQALGCRTRSQYREED 532
           + ALGC         D
Sbjct: 358 ITALGCGIGPDEYNPD 373


>gi|118201796|gb|ABK79711.1| DNA gyrase subunit b [Roseivivax halotolerans]
          Length = 357

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 123/366 (33%), Positives = 188/366 (51%), Gaps = 13/366 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALSD L + + R       +F RG  +  L        ++GT + F      F +   +
Sbjct: 1   NALSDWLELRIWRNGREHVARFERGETVEHLRDVGDANGQQGTEVRFLASLTTFSNL-DY 59

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L K  +  A+L+  V+     ++        P K E ++ GG+K +++    ++  
Sbjct: 60  DFHVLEKRLRELAFLNSGVRILLEDER-----PAEPLKSELFYEGGVKEFVKYLDRSKQP 114

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +  E      E+ G     VE A+ W +     +  + N I   +GGTH +G R ALTR 
Sbjct: 115 MMPEPIYMTGERDGI---GVEIAMWWNDSYHETVLPFTNNIPQRDGGTHMAGFRGALTRT 171

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + +YA  +    K  +S   DD       +LSV + +P+F+ QTK KLVS + +  VE+ 
Sbjct: 172 LTRYATDSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVESM 231

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    +  +NP EA  ++  ++E +  R   RK RE   RKTA+    L GKL DCS+
Sbjct: 232 MNEKLSEWFEENPNEARMVVGKIVEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSE 291

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TELFIVEGDSAGGSA+  R+R  QA+LPL+GKILNV  A  +++ ++Q+I +LV 
Sbjct: 292 KDPSKTELFIVEGDSAGGSAQTGRDRGTQAILPLKGKILNVERARFDRMLSSQEIGNLVM 351

Query: 519 ALGCRT 524
           ALG   
Sbjct: 352 ALGTGI 357


>gi|318066851|emb|CBY89137.1| DNA gyrase subunit B [Halomonas halophila]
 gi|318066871|emb|CBY89147.1| DNA gyrase subunit B [Halomonas salina]
          Length = 349

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 125/360 (34%), Positives = 191/360 (53%), Gaps = 16/360 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +T+ R   +  Q +  G+P++PL    K   + G+R+ F+P P+ F +
Sbjct: 1   VSVVNALSEELKLTIWRNEQVHEQVYRHGVPVAPLSVVGKT-EQSGSRVHFKPSPETFHN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F++ GGLK ++     
Sbjct: 60  I-EFHYDVLAKRLRELSFLNSGVAIRLMDERSGKE-------ELFHYEGGLKAFVDHLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N+++++         + G     VE A+ W +     I  Y N I   +GGTH +G R +
Sbjct: 112 NKTVLNPVFHFNVEREDGV---GVEIAMQWNDTFAENIFCYTNNIPQRDGGTHLAGFRAS 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  +S   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRTLNHYIEAEGLLKKAKVSTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  +   F  YLV+ P EA  ++  +++ +  R   RK      RK A+    LPGKLA
Sbjct: 229 VEQEMGRQFAEYLVEKPNEAKSIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLA 288

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +ELF+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 289 DCQEKDPGLSELFLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 348


>gi|51571571|emb|CAH18952.1| gyrase B [Corallococcus coralloides]
          Length = 351

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 120/363 (33%), Positives = 187/363 (51%), Gaps = 16/363 (4%)

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
            VN LS+   V V R   I+ Q ++RG+     ++     +KRGT I F+PD  +     
Sbjct: 1   CVNFLSEWFKVRVQRAGKIYEQSYARGVSNGSPQEVG-TTDKRGTTIHFKPDSMVMETV- 58

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F+   L +  +  A+L+  +      ++   E         F F GG+ ++++   + +
Sbjct: 59  DFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD-------FKFEGGISSFVEYLNKAK 111

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
             +  +    K+E++G    ++E A+ W +     I ++ N I T EGG+H SG + ALT
Sbjct: 112 EALHDKPVYIKSEREGV---SLEIAMQWNDGYDERIFTFANNINTHEGGSHLSGFKAALT 168

Query: 340 RGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  YAE     + +      +D       ++SV +  P+F GQTKTKL + + +  VE
Sbjct: 169 RTLNSYAEKGSLWKDLKDTPTGEDAREGLSAVISVKLSNPQFEGQTKTKLGNSEVKGLVE 228

Query: 398 NALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
             + D    +L +NP  A K++  +          R+ +  V RK  +    LPGKLADC
Sbjct: 229 QMVNDQLASFLEENPPLAKKVVAKIGDACRARLAARKARETVRRKGVLDGGGLPGKLADC 288

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
                H +EL+IVEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  EK+  + +I+ L
Sbjct: 289 QSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTSAEIVTL 348

Query: 517 VQA 519
           + A
Sbjct: 349 ITA 351


>gi|51571573|emb|CAH18953.1| gyrase B [Corallococcus coralloides]
          Length = 365

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 121/371 (32%), Positives = 190/371 (51%), Gaps = 16/371 (4%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G   VN LS+   V V R   ++ Q ++RG+     ++     +K GT I F+PD ++  
Sbjct: 7   GRPCVNFLSEWFKVRVQRAGKVYEQSYARGVANGSPQEVG-TTDKLGTTIHFKPDTQVME 65

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F+   L +  +  A+L+  +      ++   E         F F GG+ ++++   
Sbjct: 66  TV-DFNFETLSQRLRELAFLNAGLHITIRDERTQKEHD-------FKFDGGISSFVEYLN 117

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           + +  +  +    K+E++G    ++E A+ W +     I ++ N I T EGG+H SG + 
Sbjct: 118 KAKEALHDKPVYIKSEREGV---SLEIAMQWNDGYDERIFTFANNINTHEGGSHLSGFKA 174

Query: 337 ALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  YAE     + +      +D       ++SV +  P+F GQTKTKL + + + 
Sbjct: 175 ALTRTLNSYAEKGSLWKDLKDTPTGEDAREGLSAVISVKLSNPQFEGQTKTKLGNSEVKG 234

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRKLRLPGKL 453
            VE  + D    +L +NP  A K++  +          R+ +  V RK  +    LPGKL
Sbjct: 235 LVEQMVNDQLASFLEENPPLAKKVVVKIGDACRARLAARKARETVRRKGVLDGGGLPGKL 294

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC     H +EL+IVEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  EK+  + +I
Sbjct: 295 ADCQSRDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMPTSAEI 354

Query: 514 MDLVQALGCRT 524
           + L+ ALG   
Sbjct: 355 VTLITALGTGI 365


>gi|119581065|gb|EAW60661.1| topoisomerase (DNA) II alpha 170kDa, isoform CRA_a [Homo sapiens]
          Length = 837

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 80/173 (46%), Gaps = 11/173 (6%)

Query: 508 RNNQQIMDLVQALGCRTRSQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
             N +I ++++ +G + +  Y +ED    LRY K++IMTD D DG+HI  LL+ F +   
Sbjct: 1   MENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNW 60

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
             L+  + L     P+ ++++  + +  +     ++       H   K ++  +KGLG  
Sbjct: 61  PSLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPNH--KKWKVKYYKGLGTS 118

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
            + + KE   D  +   ++ + +           + +K    + D+R +++  
Sbjct: 119 TSKEAKEYFADMKRHR-IQFKYS-GPEDDAAISLAFSK---KQIDDRKEWLTN 166


>gi|212645657|ref|NP_495440.4| Chromosome INstability family member (cin-4) [Caenorhabditis
           elegans]
 gi|158514533|gb|ABW69249.1| chromosome instability 4 [Caenorhabditis elegans]
 gi|187357187|gb|AAB93429.4| Chromosome instability protein 4, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 842

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 107/258 (41%), Gaps = 14/258 (5%)

Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN-- 483
           S++     ++    + + ++ +       D     +    L + EGDSA   A    +  
Sbjct: 19  SKQMDDLNQKCPKRKTSKLKGIPKLEDANDAGTKNSQQCTLILTEGDSAKTLAVSGLSVV 78

Query: 484 -RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED----LRYEKV 538
            R    V P R K+LNV      +I ++ ++  +++ LG +   +Y  ED    LRY K+
Sbjct: 79  GRDKYGVFPFRRKLLNVCDLNVNQIADSAEVNAIIKILGLQYTKKYETEDDFKTLRYGKL 138

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQ 598
           +IM + D DG+    LLL FF++    L ++  +     P+ + T+G + V  +      
Sbjct: 139 LIMANHDSDGSQFKGLLLNFFHRFWPALFKRDFVEDFITPIAKATEGKEEVSFYSLPEYS 198

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           +              I  + GLG + + + K+   D  +   +R + N   +  K    +
Sbjct: 199 EW--RMNTDNWKSYTIKYYNGLGTLTSKEAKKCFSDMVRHR-IRFKYNGADDD-KAVNMA 254

Query: 659 INKLMGTKADERFKFIQE 676
            +K    K + R  ++ +
Sbjct: 255 FSK---KKIEARTDYLMK 269


>gi|106895914|gb|ABE96852.1| DNA gyrase subunit B [Aeromonas encheleia]
          Length = 345

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 123/356 (34%), Positives = 194/356 (54%), Gaps = 15/356 (4%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           +T+ R   ++ Q +  G P +PL++     +  GT + F P P IF D   +    L K 
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTL-YHYEILAKR 59

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F  
Sbjct: 60  LRELSFLNSGVSIRLEDERDGRE-------MHFCYEGGIKAFVEYLNQNKTPIHPKVFHF 112

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +  
Sbjct: 113 STEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKE 169

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +
Sbjct: 170 DYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLSEF 229

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
           L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL
Sbjct: 230 LLENPSDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSEL 289

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           +IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC
Sbjct: 290 YIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGC 345


>gi|318066873|emb|CBY89148.1| DNA gyrase subunit B [Halomonas sulfidaeris]
          Length = 349

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 128/360 (35%), Positives = 188/360 (52%), Gaps = 16/360 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS EL +T+ RQ  +F Q +  G+P +PL    K     GTR+ FRP P+ FG+
Sbjct: 1   VSVVNALSAELRLTIWRQGEVFEQMYRHGVPQAPLGVVGKTEK-SGTRVHFRPSPETFGN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F++ GGL+ ++     
Sbjct: 60  I-EFHFDILAKRLRELSFLNSGVAIRLLDERSGKE-------ELFHYEGGLRAFVDHLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N+S+I+           G     VE A+ W E     I  Y N I   +GG H +G R  
Sbjct: 112 NKSVINPVFHFNAVRDDGV---EVEVAMQWSEAFTENIFCYTNNIPQRDGGAHLAGFRAG 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRTLNNYIEAENLLKKAKVNTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  +   F  YL++ P EA  ++  +++ +  R   RK      RK A+    LPGKLA
Sbjct: 229 VEQEMSRLFSDYLIEKPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLA 288

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 289 DCQEKDPSQSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 348


>gi|291002574|gb|ADD71492.1| DNA gyrase B [Vibrio sp. F6]
          Length = 355

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 129/364 (35%), Positives = 192/364 (52%), Gaps = 15/364 (4%)

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           + + + GT+I F P  + F                      G        ++E       
Sbjct: 1   EKKKQPGTKIRFWPSEETFXXXXXXXXXXXXXXXXXXXXXXGVS-IKLVDERE------E 53

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLI-SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
            + + F + GG++ ++     N++ I   +I     E++     TVE A+ W +     I
Sbjct: 54  DKMDHFMYEGGIQAFVDHLNTNKTPIIQKKISHFDFERED--GITVEVAMQWNDGFQENI 111

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +G R ALTR +  + +      K   S   DD       ++SV 
Sbjct: 112 YCFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKASTSGDDAREGLTAVVSVK 171

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + +P+F+ QTK KLVS + +  VE+A+ +    +L++NP EA  +   +I+ +  R   R
Sbjct: 172 VPDPKFSSQTKDKLVSSEVKXXVESAMNEKLAEFLIENPTEAKIVCSKIIDAARAREAAR 231

Query: 434 KQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           K R    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL
Sbjct: 232 KAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 291

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHI 551
           +GKILNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI
Sbjct: 292 KGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHI 351

Query: 552 ASLL 555
            +LL
Sbjct: 352 RTLL 355


>gi|218139447|gb|ACK57881.1| GyrB [Actinobaculum schaalii]
          Length = 402

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 119/404 (29%), Positives = 188/404 (46%), Gaps = 22/404 (5%)

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+SVVNALS  +   V R   ++   +  G+P   LE+ E+      T  TF  +P IF
Sbjct: 1   VGVSVVNALSTRMETIVKRDGYVWRIAYENGVPTRELERGEETTETG-TTQTFWANPDIF 59

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------------EIAEKYGIPEKE 261
                +D   L K     A+L+  ++     ++               E A +     + 
Sbjct: 60  ETT-DYDFETLRKRFHQMAFLNKNLRINLIDERCSATSEGDEVTGAEGESAAEVPAKREV 118

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYC 319
            + + GGL  Y++     +            E +    +  VE A+ W       + ++ 
Sbjct: 119 SYCYSGGLLDYVKFLNSMKKSDIINNDIIYFEAEDDEKQIEVEVAMQWTSAYSESVNTFA 178

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           NTI T EGG HE G R ALT  I KYA        +  ++  DD+      ++SV +  P
Sbjct: 179 NTINTTEGGMHEEGFRSALTSVINKYAREHGLLKDKDPNLSGDDVREGLTAVISVKLGNP 238

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F GQTKTKL + +A+  V+  +      +L  +P +A +++    +    R   RK RE
Sbjct: 239 QFEGQTKTKLGNTEARTFVQQQMYTQLSDWLDSHPADAKEIIRKGTQAFAARAAARKARE 298

Query: 438 VNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
             R+ + +    +PGKL DC+ N     E+FIVEGDSAGGSA   R+  +QA++P+RGKI
Sbjct: 299 ATRRKSVLESASMPGKLKDCTSNKPEECEIFIVEGDSAGGSAVNGRDPEHQAIMPIRGKI 358

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           LNV  A  ++  ++  I  L+ A G     ++  +   Y K+I 
Sbjct: 359 LNVEKARLDRALSSDTIQSLITAFGTGIGDEFDIDKXXYHKIIS 402


>gi|327200395|gb|AEA36077.1| DNA gyrase subunit B [Mesorhizobium loti]
          Length = 366

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 126/374 (33%), Positives = 193/374 (51%), Gaps = 21/374 (5%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL---------SPLEKKEKVR 200
           +SGGLHGVG+SVVNALS  L + + R   IF   F+ G               ++     
Sbjct: 1   VSGGLHGVGVSVVNALSAWLKLRIRRNGQIFEMSFTHGNADAPLKATGSYEQDKQPGTYE 60

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
            + G+ ITF P  + F     FD   L    +  A+L+  V+   +  +           
Sbjct: 61  GRSGSEITFFPSSETFT-MVEFDFGTLEHRLRELAFLNSGVRIILTDARHADIVRHE--- 116

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYC 319
              ++ GGL+ +++     +  +  +    K E+ G    TVE A+ W +   E   ++ 
Sbjct: 117 --LHYDGGLEEFVKYLDRVKKPLIDKPIAIKAERDGI---TVEVAMWWNDSYHENVLAFT 171

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREP 377
           N I   +GGTH +G R ALTR I  Y E +   +   +  I DD       +LSV + +P
Sbjct: 172 NNIPQRDGGTHLAGFRGALTRQITGYGESSGLTKREKVGLIGDDCREGLTAVLSVKVPDP 231

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F+ QTK KLVS + +  VE  + +    +L ++P E   +++ VI+ +  R   RK R+
Sbjct: 232 KFSSQTKDKLVSSEVRPVVEGLVNEALGTWLEEHPAEGKVVIDKVIQAAAAREAARKARD 291

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
           + RK+++    LPGKLADC +     +E+FIVEGDSAGGSAK  R+R NQA+LPLRGKIL
Sbjct: 292 ITRKSSLGITSLPGKLADCQERDPAKSEIFIVEGDSAGGSAKGGRSRQNQAILPLRGKIL 351

Query: 498 NVASAGSEKIRNNQ 511
           NV  A  +++  ++
Sbjct: 352 NVERARFDRMLGSE 365


>gi|163931058|pdb|2RGR|A Chain A, Topoisomerase Iia Bound To G-Segment Dna
          Length = 759

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 59/224 (26%), Positives = 107/224 (47%), Gaps = 15/224 (6%)

Query: 462 HGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
           +   L + EGDSA   A        R      PLRGK+LNV  A +++I  N +I  + +
Sbjct: 23  YKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKK 82

Query: 519 ALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE-QKHLFLIS 576
            +G + R +Y +   LRY  ++IMTD D DG+HI  L++ F       L++ Q  L    
Sbjct: 83  IMGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSFLGLLDIQGFLLEFI 142

Query: 577 PPLFRI---TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633
            P+ ++        ++  ++    +K  EE  +  K   +   +KGLG  LA +++E   
Sbjct: 143 TPIIKVSITKPTKNTIAFYNMPDYEKWREE--ESHKFTWKQKYYKGLGTSLAQEVREYFS 200

Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
           + ++   L++  +   N       + +K    KAD+R +++++ 
Sbjct: 201 NLDRH--LKIFHSLQGNDKDYIDLAFSK---KKADDRKEWLRQY 239


>gi|157830305|pdb|1BGW|A Chain A, Topoisomerase Residues 410-1202
 gi|157830349|pdb|1BJT|A Chain A, Topoisomerase Ii Residues 409-1201
          Length = 793

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 61/252 (24%), Positives = 112/252 (44%), Gaps = 17/252 (6%)

Query: 436 REVNRKTAIRKLRLP--GKLADCSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVL 490
           ++ +     R    P             +   L + EGDSA   A        R      
Sbjct: 5   KKSDGTRKSRITNYPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCY 64

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGA 549
           PLRGK+LNV  A +++I  N +I  + + +G + R +Y +   LRY  ++IMTD D DG+
Sbjct: 65  PLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIMTDQDHDGS 124

Query: 550 HIASLLLTFFYQEMYDLIE-QKHLFLISPPLFRI---TQGTKSVYAHDEEHKQKILEEFK 605
           HI  L++ F       L++ Q  L     P+ ++        ++  ++    +K  EE  
Sbjct: 125 HIKGLIINFLESSFLGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREE-- 182

Query: 606 KHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT 665
           +  K   +   +KGLG  LA +++E   + ++   L++  +   N       + +K    
Sbjct: 183 ESHKFTWKQKYYKGLGTSLAQEVREYFSNLDRH--LKIFHSLQGNDKDYIDLAFSK---K 237

Query: 666 KADERFKFIQER 677
           KAD+R +++++ 
Sbjct: 238 KADDRKEWLRQY 249


>gi|89143174|emb|CAJ57484.1| DNA gyrase subunit B [Microbacterium aurum]
          Length = 365

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 114/365 (31%), Positives = 181/365 (49%), Gaps = 15/365 (4%)

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
            RQ  ++ Q FS G        + +   + GT ITF PD  IF     FD   L    Q 
Sbjct: 1   RRQGYVWRQTFSGGGKPEGPLARGEETEETGTIITFWPDATIFESV-DFDYDTLRTRFQQ 59

Query: 234 KAYLSGRVKTCWSCDK---------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
            A+L+  ++   S  +         +  +   +   ++F++  GL  Y++   + R    
Sbjct: 60  TAFLNKGLRITLSDHRPASAYVVDGDDGQAVEMQPHDDFHYERGLVDYVEYLNKVRKAEV 119

Query: 285 SEIFTGKTEKKGTHR-GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
                 + E + T R  ++E A+ W       + ++ NTI T EGGTHE G R ALT  I
Sbjct: 120 VNDEIIEVESEDTERHISLELAMQWTTSYTENVFTFANTINTHEGGTHEEGFRAALTTLI 179

Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
            KYA       ++  ++  +D+      ++SV + EP+F GQTKTKL + +A+  V+  +
Sbjct: 180 NKYARANNLLKEKDDNLTGEDIREGLTAVISVKLSEPQFEGQTKTKLGNTEAKAFVQKIV 239

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQN 459
            D    +L +NP +A +++   I+ +  RL  RK RE  R+ +      +P KL DC+  
Sbjct: 240 GDQLTDWLDRNPQQAKRIITKAIDAATARLAARKARETARRKSVFESASMPDKLKDCTSK 299

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
               +E+F+VEGDSAGGSA + R+   QA+L LRGK+LNV  A  ++   N +I  ++ A
Sbjct: 300 DPSISEIFLVEGDSAGGSAVRGRDPETQAILSLRGKVLNVEKARLDRALGNNEIQAIISA 359

Query: 520 LGCRT 524
            GC  
Sbjct: 360 FGCGI 364


>gi|258572076|gb|ACV82176.1| DNA gyrase subunit B [Burkholderia cenocepacia]
 gi|258572080|gb|ACV82177.1| DNA gyrase subunit B [Burkholderia cenocepacia]
 gi|258572082|gb|ACV82178.1| DNA gyrase subunit B [Burkholderia cenocepacia]
 gi|258572086|gb|ACV82179.1| DNA gyrase subunit B [Burkholderia cenocepacia]
          Length = 246

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 86/257 (33%), Positives = 128/257 (49%), Gaps = 26/257 (10%)

Query: 104 NGFLTVVDNGRGIPVE--NHPKFP-NKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           +  ++V DNGRGIP +   + K    +S  EI++T LHAGGKFD ++Y++SGGLHGVG+S
Sbjct: 1   DNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQNSYKVSGGLHGVGVS 60

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK-----------KEKVRNKRGTRITF 209
            VNALS  L +TV R       +F RG+    + +                  RGT + F
Sbjct: 61  CVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVIEVVDGVEVSPMLVTGDTENRGTEVHF 120

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
             DP IFG    +    L K  +  ++L+  V+   +  +   E         F F GG+
Sbjct: 121 MADPTIFGT-VEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD-------FAFAGGV 172

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K +++   + +S +   +F    EK G     VE A+ W +     +  + N I   +GG
Sbjct: 173 KGFVEFINKTKSTLHPTVFFANGEKDGV---GVEVAMQWNDSYNENVLCFTNNIPQRDGG 229

Query: 329 THESGLRVALTRGIKKY 345
           TH +GLR A+TR I KY
Sbjct: 230 THLTGLRAAMTRVINKY 246


>gi|190148872|gb|ACE63411.1| DNA gyrase B subunit [Pseudonocardia sp. S010]
          Length = 365

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 117/370 (31%), Positives = 189/370 (51%), Gaps = 20/370 (5%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  L V +     ++ Q ++R +P    +   +   K G+ +T+
Sbjct: 2   VSGGLHGVGVSVVNALSTALDVEIHTDGFVWRQHYARSVPGPLRK--GEPTKKTGSTVTY 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP----------E 259
             D  IF     ++   + +  Q  A+L+  +      ++                   +
Sbjct: 60  WADGDIFETLT-YNIETIRRRLQEMAFLNKGLTITLRDERNGDNGEAEEPDAEGYVAKVK 118

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
           +  F +P GL+ ++    +++  I  ++ +   E  G     VE A+ W       + ++
Sbjct: 119 EYTFCYPNGLEDFVAHLNKSKDPIHKKLVSFTGEGTGHQ---VEVAMQWNSGYTESVYTF 175

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            NTI T EGGTHE G R ALT  + +YA   +   ++  ++  DD+      I+SV ++E
Sbjct: 176 ANTINTHEGGTHEEGFRSALTTTVNRYARDKKLLKEKDPALSGDDIREGLAAIVSVKVKE 235

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ- 435
           P+F GQTKTKL + + +  V+    +    +  +NP EA  ++   ++ ++ R   RK  
Sbjct: 236 PQFEGQTKTKLGNTEVKSFVQRVSNEWLADWFERNPTEARTIVNKAVQSAQARAAARKAR 295

Query: 436 REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
             V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LP+RGK
Sbjct: 296 ELVRRKSAGDIGGLPGKLADCRSTDPSKSEVYIVEGDSAGGSAKSGRDSMFQAILPIRGK 355

Query: 496 ILNVASAGSE 505
           I+NV  A  +
Sbjct: 356 IINVEKARID 365


>gi|89143218|emb|CAJ57506.1| DNA gyrase subunit B [Microbacterium thalassium]
          Length = 362

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 113/363 (31%), Positives = 178/363 (49%), Gaps = 13/363 (3%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V V RQ  ++ Q +  G        + +  +  GT ITF PD  IF     FD   L   
Sbjct: 1   VEVRRQGHVWRQSYQGGGIPIAPLAQGETSSDTGTTITFWPDEGIFDTV-DFDYDTLRTR 59

Query: 231 TQSKAYLSGRVKTCWSCDK-----EIAEKYGIPE--KEEFYFPGGLKTYLQTKLENRSLI 283
            Q  A+L+  ++     ++     +  E+   PE   + F +  GL  Y+    + R   
Sbjct: 60  FQQMAFLNKGLRIDLRDERALEVLDAVEEAAEPEVRHDSFLYERGLVDYVGYLNKVRHAD 119

Query: 284 SSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +        E +    +  +E A+ W       + ++ NTI T EGGTHE G R ALT  
Sbjct: 120 AVNDEIIDFESEDTERKIAMEMAMQWTTSYTENVFTFANTINTHEGGTHEEGFRAALTAL 179

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + +YA        +  ++  +D+      ++SV + EP+F GQTKTKL + +A+  V+  
Sbjct: 180 VNRYARANNLLKDKDDNLTGEDIREGLTAVISVKLSEPQFEGQTKTKLGNTEAKAFVQKV 239

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458
           + D    +  +NP +A  ++   I+ +  RL  RK RE  R+ +      +P KL DC+ 
Sbjct: 240 VGDQLGDWFDRNPAQAKNIIRKAIDAASARLAARKARETARRKSVFESAAMPDKLKDCTS 299

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+F+VEGDSAGGSA Q R+   QA+L LRGKILNV  A  +K  +N+++  ++Q
Sbjct: 300 KDPSISEIFLVEGDSAGGSAVQGRDPHTQAILALRGKILNVERARLDKALSNKEVQAMIQ 359

Query: 519 ALG 521
           A G
Sbjct: 360 AFG 362


>gi|6644320|gb|AAF21005.1|AF208254_1 DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 384

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 131/394 (33%), Positives = 205/394 (52%), Gaps = 19/394 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           S G++ V I + NAL D+L +T+   + ++ Q +  G P +PL++        GT + F 
Sbjct: 1   SAGVYAVDIPLTNALCDKLLLTIRWNSHVYEQTYHLGEPQAPLKQIGHAT-TTGTEVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P P IF D   F    L K     ++L+  V      +++  E         F + GG+K
Sbjct: 60  PIPTIFSDTL-FHYEILAKRLLELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIK 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGT 329
            +++   +N++ I  ++F   TE  G     V+ A+ W +   +    + N I   +G T
Sbjct: 112 AFVKYLNQNKTPIHPKVFHFTTEHDGI---GVQVAMHWNDAYHDWVYCFTNNIPQPDGWT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R ALTR +  Y +     NK   +   D+L    + ++SV +R+ +F+ Q K KL
Sbjct: 169 HLVGFRTALTRTLNSYMDQKDYSNKAKSAASGDNLREGLIAVISVKVRDTKFSSQIKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
           VS + +  VE A+ +    +L++ P +A  ++  +I+ +  R   RK RE   RK A+  
Sbjct: 229 VSSEVKTAVEQAMGEKLADFLLEIPGDAKMVVNKIIDAARAREAARKARELTRRKGALDI 288

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 289 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 348

Query: 507 IRNNQQIMDLVQALGCRTRSQYR---EEDLRYEK 537
           + ++QQ+  L+ ALGC          +  + Y  
Sbjct: 349 MISSQQVGTLITALGCGIGRDECKQVKMRVSYHH 382


>gi|318066879|emb|CBY89151.1| DNA gyrase subunit B [Halomonas ventosae]
          Length = 349

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 125/360 (34%), Positives = 188/360 (52%), Gaps = 16/360 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +T+ R   +  Q +  G+P +PL    K     GTR+ FRP  + F +
Sbjct: 1   VSVVNALSEELRLTIWRAGQVHEQVYHHGVPDAPLSVVGKTEK-SGTRVHFRPSSETFHN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F++ GGLK ++     
Sbjct: 60  I-EFHYDILAKRLRELSFLNSGVAIRLMDERSGKE-------ELFHYEGGLKAFVNHLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N+++++         + G     VE A+ W +     I  Y N I   +GGTH +G R A
Sbjct: 112 NKTVLNPVFHFNAEREDGV---GVEVAMQWNDTFSENIFCYTNNIPQRDGGTHLAGFRAA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRSLNHYIEAEGLLKKAKVNTSGDDAREGLTAIISVKVPDPKFSAQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  +   F  YL++ P EA  ++  +++ +  R   RK      RK A+    LPGKLA
Sbjct: 229 VEQEMGRLFSEYLIEKPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLA 288

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +ELF+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 289 DCQEKDPSLSELFLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 348


>gi|62944552|gb|AAY22124.1| DNA gyrase subunit B [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 348

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 112/358 (31%), Positives = 191/358 (53%), Gaps = 14/358 (3%)

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALSD L +TV R       +F  G+ + PL+      +KRGTR+ F P  + F   
Sbjct: 1   SVVNALSDYLELTVWRDGQEHRMRFEHGVAVEPLQVVG-ASDKRGTRVRFHPSAETFK-I 58

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+  +L    +  A+L+  V+   +  +   EK         ++ GG+  +++     
Sbjct: 59  TEFNFEKLEHRYRELAFLNSGVRLQLTDKRTDPEKTVE-----LFYEGGIAAFVKWLDRA 113

Query: 280 RSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
           ++ +  E      ++        +EW  ++     ++  + N I   +GGTH +  R AL
Sbjct: 114 KTALIPEPVAIHGDRDDVMIDVALEWNDSY---YEQVLCFTNNIPQRDGGTHLAAFRAAL 170

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  YA+ +    K  + +  DD+      I+SV + +P+F+ QTK KLVS + ++ +
Sbjct: 171 TRTLNNYADKSGLLKKEKVQLTGDDMREGLTAIISVKLPDPKFSSQTKDKLVSSEVRQPL 230

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLAD 455
           E+ + D    +L +NP  A  +++ +I+ +  R   ++ RE+ R+   +    LPGKLAD
Sbjct: 231 ESLMADKMAEWLEENPAHAKVIIQKIIDAAAAREAAKRARELTRRKGVMDIASLPGKLAD 290

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           C +     +E+FIVEGDSAGGSAKQ RNR NQA+LPL+GKILN   +  +++ +++++
Sbjct: 291 CQERDPTKSEIFIVEGDSAGGSAKQGRNRHNQAILPLKGKILNTERSRLDRMLSSKEV 348


>gi|29652763|gb|AAO87351.1| DNA gyrase B [Listeria monocytogenes]
          Length = 153

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 73/153 (47%), Positives = 100/153 (65%)

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A 
Sbjct: 1   LEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKAR 60

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
            ++I  N++I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ M
Sbjct: 61  LDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYM 120

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEH 596
             L++  ++++  PPL++I  G +  Y + +  
Sbjct: 121 RPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQ 153


>gi|318066853|emb|CBY89138.1| DNA gyrase subunit B [Halomonas hydrothermalis]
          Length = 349

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 128/360 (35%), Positives = 191/360 (53%), Gaps = 16/360 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +T+ RQ  +F Q +  G+P +PL    K     GTR+ FRP P  F +
Sbjct: 1   VSVVNALSEELRLTIWRQGEVFEQVYQHGVPQAPLGIVGKTEK-SGTRVHFRPSPNTFAN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F++ GGLK ++    +
Sbjct: 60  I-EFHYDILAKRLRELSFLNSGVAIRLMDERSGKE-------ELFHYEGGLKAFVDHLNK 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N+++++         + G     VE A+ W E     I  Y N I   +GGTH +G R A
Sbjct: 112 NKTVLNPVFHFNALREDGV---EVEVAMQWSEAFTENIFCYTNNIPQRDGGTHLAGFRAA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRTLNHYIEAQGLLKKSKVNTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  +   F  YL++ P EA  ++  +++ +  R   RK      RK A+    LPGKLA
Sbjct: 229 VEQEMGRLFADYLIEKPNEAKSIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLA 288

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 289 DCQEKDPSQSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 348


>gi|318066875|emb|CBY89149.1| DNA gyrase subunit B [Halomonas taeanensis]
          Length = 349

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 126/360 (35%), Positives = 189/360 (52%), Gaps = 16/360 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +T+ R   +  Q +  G+P SPL    K     G+R+ FRP P+ F +
Sbjct: 1   VSVVNALSEELKLTIWRAGQVHEQIYHHGVPASPLSIVGKTEK-SGSRVHFRPSPETFAN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F++ GGLK ++     
Sbjct: 60  I-EFHYDILAKRLRELSFLNSGVAIRLMDERSGKE-------ELFHYDGGLKAFVDHLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N+++++         + G     VE A+ W +     I  Y N I   +GGTH +G R +
Sbjct: 112 NKTVLNPVFHFSVEREDGV---GVEVAMQWNDTFAENIFCYTNNIPQRDGGTHLAGFRAS 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  +S   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRSLNNYIEAEGLLKKAKVSTSGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  +   F  YLV+ P EA  ++  +++ +  R   RK      RK A+    LPGKLA
Sbjct: 229 VEQEMGRQFSDYLVERPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLA 288

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 289 DCQEKDPSLSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 348


>gi|261488454|emb|CAU94902.1| DNA gyrase subunit B [Pelomonas aquatica]
          Length = 342

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 102/323 (31%), Positives = 166/323 (51%), Gaps = 27/323 (8%)

Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178
           + H   P +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VN LS  L +TV +   
Sbjct: 1   DKHE--PKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNGLSKWLRLTVRQGGK 58

Query: 179 IFSQKFSRGIPLS------------PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAAR 226
           +   +F++GIP +            P++      +KRGT + F PD +IF     +    
Sbjct: 59  VHYIEFAKGIPQNGESVMVDGAETRPMKVIGDT-DKRGTEVHFLPDTEIFQQNNDYHYDI 117

Query: 227 LLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSE 286
           L K  +  ++L+  VK     ++   E         F + GG+K +++   + ++ +   
Sbjct: 118 LAKRLRELSFLNNGVKIRLVDERNNKEDN-------FAYAGGVKGFVEFINKGKTTLHPN 170

Query: 287 IFTGKTEK--KGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRGIK 343
           IF    EK         VE A+ W +  N  +  + N I   +GGTH +GLR A+TR I 
Sbjct: 171 IFHAVGEKQSDQGTTVGVEVAMQWNDGFNENVLCFTNNIPQRDGGTHLTGLRAAMTRVIN 230

Query: 344 KYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
           KY E  +   K  + +  DD+      ++SV + EP+F+ QTK KLVS + +  VE+ + 
Sbjct: 231 KYIEDNELAKKAKVEVAGDDMREGLACVVSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVS 290

Query: 402 DPFDHYLVQNPIEATKLLEWVIE 424
                YL++NP++A  +   +++
Sbjct: 291 RLLTDYLLENPLDAKTICGKILD 313


>gi|156536668|gb|ABU80438.1| gyrase B [Photorhabdus sp. H3107]
          Length = 337

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 119/347 (34%), Positives = 180/347 (51%), Gaps = 15/347 (4%)

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
              ALS++L + + R   +  Q +  G+P SPL+   +   + GTR+ F P    F +  
Sbjct: 2   CCYALSEKLELIIRRDGKVHEQTYHLGVPQSPLKVVGET-EQTGTRVRFWPSMDTFRNNT 60

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L K  +  ++L+  V       +   E       + F++ GG+K +++   +N+
Sbjct: 61  EFQHDILAKRLRELSFLNSGVSIRLLDKRTNIE-------DHFHYEGGIKAFVEFLNKNK 113

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + I   +F   TEK G     VE A+ W +     I  + N I   +GGTH  G R A+T
Sbjct: 114 TPIHPNVFYFSTEKDGI---GVEAALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMT 170

Query: 340 RGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  Y +      K  +S   DD     V ++SV + +P+F+ QTK KLVS + +  VE
Sbjct: 171 RTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVE 230

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADC 456
             + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLADC
Sbjct: 231 TLMNEKLVEYLLENPNDAKTVVSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADC 290

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
            +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKIL V  A 
Sbjct: 291 QERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILYVEKAR 337


>gi|89143210|emb|CAJ57502.1| DNA gyrase subunit B [Microbacterium saperdae]
          Length = 361

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 109/357 (30%), Positives = 177/357 (49%), Gaps = 13/357 (3%)

Query: 179 IFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLS 238
           ++   F+ G       +K +  ++ GT ITF PD +IF +   FD   L    Q  A+L+
Sbjct: 4   VWRHSFANGGAPQQKLEKGEATDETGTTITFWPDAEIFTETIEFDYDTLRTRFQQMAFLN 63

Query: 239 GRVKTCWSCDKEIAEKYGIPEK--------EEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
             ++     ++  +      +         + F++  GL  Y++   + R          
Sbjct: 64  KGLRIDLRDERPQSAYEIEVDGQTVSKQPGDVFFYERGLVDYVEYLNKVRHAEVVNEEII 123

Query: 291 KTEKKGTHR-GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
             E +   R  ++E A+ W       + +Y NTI T EGGTHE G R ALT  + KYA  
Sbjct: 124 AFESEDIARKISLEVAMQWTTSYTENVFTYANTINTHEGGTHEEGFRAALTTLVNKYARA 183

Query: 349 TQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
                ++  ++  DD+      ++S+ + EP+F GQTKTKL + +A+  V+  + D    
Sbjct: 184 NNILKEKDDNLSGDDVREGLTAVISIKLGEPQFEGQTKTKLGNTEAKAFVQKVVGDQLGD 243

Query: 407 YLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTE 465
           +  +NP +A  ++   ++ +  RL  RK RE  R+ +      +P KL DC+      +E
Sbjct: 244 WFDRNPTQAKNIIRKALDAATARLAARKARETARRKSVFESAAMPDKLKDCTSKDPSISE 303

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           +F+VEGDSAGGSA Q R+   QA+L LRGKILNV  A  +K   N+++  ++QA G 
Sbjct: 304 IFLVEGDSAGGSAVQGRDPHTQAILALRGKILNVERARLDKALGNKEVQAMIQAFGT 360


>gi|33146004|emb|CAD57643.2| DNA gyrase subunit B [Vibrio splendidus]
          Length = 354

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 125/363 (34%), Positives = 191/363 (52%), Gaps = 14/363 (3%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS ++ +T+ R   I +Q +  G P +PL       +K GT I F P  + F +   F 
Sbjct: 1   ALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVGDT-DKTGTEIRFWPSEETFTNI-EFH 58

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L K  +  ++L+  V       +E        + + F + GG++ +++    N++ I
Sbjct: 59  YDILAKRLRELSFLNSGVSIKLIDKRE------EDKMDHFEYEGGIQAFVEHLNTNKTPI 112

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
             +IF   +E+      TVE A+ W +     I  + N I   +GG H +G R ALTR +
Sbjct: 113 IQKIFHFDSERDD--GITVEVAMQWNDGYQENIYCFTNNIPQRDGGAHLAGFRAALTRTL 170

Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             + +      K   S   DD       I+SV + +P+F+ QTK KLVS + +  VE+ +
Sbjct: 171 NSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESTM 230

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQN 459
            +    +L++NP EA  +   +I+ +  R   RK      RK A+    LPGKLADC + 
Sbjct: 231 GEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTRRKGALDLAGLPGKLADCQEK 290

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
               +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ A
Sbjct: 291 DPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITA 350

Query: 520 LGC 522
           LGC
Sbjct: 351 LGC 353


>gi|170178302|gb|ACB10198.1| DNA gyrase subunit B [Kribbella sandramycini]
          Length = 370

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 125/371 (33%), Positives = 193/371 (52%), Gaps = 8/371 (2%)

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKE 261
            GT +TF  +P +F     +    L    +  A+L+  ++     ++ +  +  G P ++
Sbjct: 2   NGTTVTFWANPDVFETTT-YSYETLATRFREYAFLNKGLELVIRDERPDHVDDDGNPMEQ 60

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F +  GL  Y++     R  +  ++ + +      +  ++E A+ W       + ++ N
Sbjct: 61  SFKYDEGLVDYVKYLTGIRETVHRDVISFEA-ATVENTMSLEVALQWSGSFQESVHTFAN 119

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I T EGGTHE G R ALT  +  + E      K+   +  DD+      I+SV + EP+
Sbjct: 120 AINTHEGGTHEEGFRAALTSLVNSFGEDQGIIKKKEDRLTGDDIREGLTAIISVKLGEPQ 179

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE- 437
           F GQTKTKL + + +  V+  + D    +  QNP E  +++      +  R+  RK R+ 
Sbjct: 180 FEGQTKTKLGNTEVKGFVQRVVNDKLGAWFEQNPQEGKEIVRKATAAASARIAARKARDL 239

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
             NRK  +    LPGKLADC        E++IVEGDSAGGSAK  R+   QA+LP+RGKI
Sbjct: 240 ARNRKGLLGGGGLPGKLADCQSTNPEECEVYIVEGDSAGGSAKGGRDPKFQAILPIRGKI 299

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556
           LNV  A  +K+  N ++  ++ ALG      + EE LRY K++IM DADVDG HI +LLL
Sbjct: 300 LNVEKARIDKVLQNNEVQAIISALGTGIHEDFDEEKLRYHKIVIMADADVDGQHIRTLLL 359

Query: 557 TFFYQEMYDLI 567
           T  ++ M  LI
Sbjct: 360 TLLFRFMRPLI 370


>gi|318066831|emb|CBY89127.1| DNA gyrase subunit B [Halomonas campaniensis]
          Length = 349

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 129/360 (35%), Positives = 193/360 (53%), Gaps = 16/360 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +T+ R   +F Q +  G+P +PL    K  N  GTR+ FRP P+ F +
Sbjct: 1   VSVVNALSEELKLTIWRAGEVFEQVYYHGVPAAPLAVVGKTEN-SGTRVHFRPSPETFAN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F++ GGL+ ++     
Sbjct: 60  I-EFHYDILAKRLRELSFLNSGVAIRLIDERSGKE-------ELFHYEGGLEAFVHHLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N+++++         + G    +VE A+ W +     I  Y N I   +GGTH +G R A
Sbjct: 112 NKAVLNPVFHFNAEREDGV---SVEVAMQWNDSFSENIFCYTNNIPQRDGGTHLAGFRAA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD     V I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRTLNGYIESEGLLKKSKVNTSGDDAREGLVAIISVKVPDPKFSSQTKEKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  +   F  YLV+ P EA  ++  +++ +  R   RK      RK A+    LPGKLA
Sbjct: 229 VEQEMGRLFSEYLVEKPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLA 288

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +ELF+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 289 DCQEKDPSLSELFLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 348


>gi|124300767|dbj|BAF45881.1| gyrase B [Escherichia coli]
          Length = 333

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 116/343 (33%), Positives = 183/343 (53%), Gaps = 15/343 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R+  I  Q +  G+P +PL    +     GT + F P  + F +   F+   L K  +  
Sbjct: 2   REGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNVTEFEYDILAKRLREL 60

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V       ++  E       + F++ GG+K +++   +N++ I   IF   TEK
Sbjct: 61  SFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEK 113

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      
Sbjct: 114 DGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSK 170

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++N
Sbjct: 171 KAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLEN 230

Query: 412 PIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   R+ R    RK A+    LPGKLADC +     +EL++VE
Sbjct: 231 PTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVE 290

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 291 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 333


>gi|269970291|gb|ACZ55130.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. luminescens]
          Length = 319

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 103/329 (31%), Positives = 167/329 (50%), Gaps = 15/329 (4%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG+SVVNALS++L + + R   +  Q +  G+P SPL+   +   
Sbjct: 2   KFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGET-E 60

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           + GTR+ F P    F +   F    L K  +  ++L+  V       +   E       +
Sbjct: 61  QTGTRVRFWPSMDTFRNNTEFQHDILAKRLRELSFLNSGVSIRLIDKRTNIE-------D 113

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F++ GG+K +++   +N++ I   +F   TEK G     VE ++ W +     I  + N
Sbjct: 114 HFHYEGGIKAFVEFLNKNKTPIHPNVFYFSTEKDGI---GVEISMQWNDGFQENIYCFTN 170

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPE 378
            I   +GGTH  G R   TR +  Y +      K  +S   DD     V ++SV + +P+
Sbjct: 171 NIPQRDGGTHLVGFRTXXTRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPK 230

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQRE 437
           F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+        R+ +  
Sbjct: 231 FSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVSKIIDAARAREAARKAREM 290

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
             RK A+    LPGKLADC +     +EL
Sbjct: 291 TRRKGALDLAGLPGKLADCQERDPALSEL 319


>gi|218139451|gb|ACK57882.1| GyrB [Actinobaculum schaalii]
          Length = 402

 Score =  173 bits (439), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 117/404 (28%), Positives = 186/404 (46%), Gaps = 22/404 (5%)

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+SVVNA S  +   V R   ++   +  G+P   LE+ E+      T  TF  +P IF
Sbjct: 1   VGVSVVNAXSTRMETIVKRDGYVWRIAYENGVPTRELERGEETTETG-TTQTFWANPDIF 59

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE---------------KYGIPEKE 261
                +D   L K     A+L+  ++     ++  A                +     + 
Sbjct: 60  ETT-DYDFETLRKRFHQMAFLNKNLRINLIDERRSATSEGDEVTGAEGETAAEVPAKREV 118

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYC 319
            + + GGL  Y++     +            E +    +  VE A+ W       + ++ 
Sbjct: 119 SYCYSGGLLDYVKFLNSMKKSDIINNDIIYFEAEDDEKQIEVEVAMQWTSAYSESVNTFA 178

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           NTI T EGG HE G R ALT  I KYA        +  ++  DD+      ++SV +  P
Sbjct: 179 NTINTTEGGMHEEGFRSALTSVINKYAREHGLLKDKDPNLSGDDVREGLTAVISVKLGNP 238

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F GQTKTKL + +A+  V+  +      +L  +P +A +++    +    R   RK RE
Sbjct: 239 QFEGQTKTKLGNTEARTFVQQQMYTQLSDWLDSHPADAKEIIRKGTQAFAARAAARKARE 298

Query: 438 VNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
             R+ + +    +PGKL DC+ N     E+FIVEGDSAGGSA   R+  +QA++P+RGKI
Sbjct: 299 ATRRKSVLESASMPGKLKDCTSNKPEECEIFIVEGDSAGGSAVNGRDPEHQAIMPIRGKI 358

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           LNV  A  ++  ++  I  L+ A G     ++  +   Y K+I 
Sbjct: 359 LNVEKARLDRALSSDTIQSLITAFGTGIGDEFDIDKXXYHKIIS 402


>gi|171702698|dbj|BAG16317.1| DNA gyrase subunit B [Flavobacterium branchiophilum]
          Length = 356

 Score =  173 bits (439), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 119/360 (33%), Positives = 185/360 (51%), Gaps = 9/360 (2%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            ++ Q++ +G  L P+++       RGT +TF PD  IF     +    L    +  ++L
Sbjct: 2   KVYEQEYEKGKALYPVKQIGTTEK-RGTIVTFYPDETIFQQTIEYSYDTLSARMRELSFL 60

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +   ++  + I +K G  + E F+   GLK Y++    NR  I + + +   EK   
Sbjct: 61  NKGITITFTDKR-IVDKEGHFQSEVFHSKEGLKEYIRYLDGNREPIIAHVISMDNEK--- 116

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRA 354
               VE A+ +       I SY N I T EGGTH  G R  LTR +KKYA+ +    K  
Sbjct: 117 GEIPVEVALIYNTSYSENIFSYVNNINTHEGGTHLQGFRAGLTRTLKKYADASGMLEKLK 176

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             I  DD       I+SV + EP+F GQTKTKL + +    V  A+ +  + YL +NP +
Sbjct: 177 FEIAGDDFREGLTAIISVKVSEPQFEGQTKTKLGNREVVSPVSQAVAEMLETYLEENPND 236

Query: 415 ATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA-DCSQNIAHGTELFIVEGDS 473
           A  +++ VI  ++ R   +K RE+ ++  +           DCS+      E+++VEGDS
Sbjct: 237 ARIIIQKVILAAQARHAAKKAREMVQRKTVLGGGGLPGKLSDCSEQDPARCEVYLVEGDS 296

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533
           AGG+AKQ R+R+ QA+LPLRGKILNV  A   K+  N++I ++  ALG    +    + L
Sbjct: 297 AGGTAKQGRDRAFQAILPLRGKILNVEKAMHHKVFENEEIRNIFTALGITIGTAEDSKAL 356


>gi|307343788|emb|CBJ19499.1| gyrase B subunit [Micromonospora sagamiensis]
          Length = 349

 Score =  173 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 105/355 (29%), Positives = 179/355 (50%), Gaps = 9/355 (2%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V + +   ++ QK++   P    +   +  ++ G+ + F PDP +F     FD   + + 
Sbjct: 1   VEIHKDGFVWRQKYTASKPSPLDK--GETTDRTGSAVAFWPDPDVFETV-DFDFQTIYRR 57

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            Q  A+L+  +      ++   ++ G   +  F + GG+  +++    +++ I   +   
Sbjct: 58  LQEMAFLNRGLTIHLLDERVPEDEDGRQREVTFCYKGGIADFVRHLNASKNPIHKTVVEF 117

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             E++G    +VE A+ W E     + ++ NTI T EGGTHE G R ALT  + KY    
Sbjct: 118 FGEEEG---MSVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRAALTSLVNKYGAEK 174

Query: 350 QN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
           +  K    +  +D+      I+SV +  P+F GQTKTKL +   +  V+    +    + 
Sbjct: 175 KLLKADEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNEWLVDWF 234

Query: 409 VQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
            +NP EA  ++ +           ++ ++   RK+ +    +PGKLADC       +E+F
Sbjct: 235 DRNPAEAKVIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVF 294

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           IVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG 
Sbjct: 295 IVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGT 349


>gi|118201758|gb|ABK79692.1| DNA gyrase subunit b [Jannaschia helgolandensis]
          Length = 356

 Score =  173 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 123/366 (33%), Positives = 186/366 (50%), Gaps = 14/366 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALSD L + + R       +F  G     L       ++ GT + F      F +   +
Sbjct: 1   NALSDWLELRIWRDGKEHVARFEGGFTTEHLSVVGP-SDETGTEVRFMASTGTFSNL-DY 58

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L    +  A+L+  VK     ++          + E ++ GG++ +++    +++ 
Sbjct: 59  VFKTLENRLRELAFLNSGVKIVLQDER-----PAEALRSELFYEGGVREFVRYIDRSKTA 113

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           +  +      E+ G     VE A+ W +   E+   + N I   +GGTH +GLR ALTR 
Sbjct: 114 VMPDPIYMIGERDGI---GVEVAMWWNDSYNEMVLPFTNNIPQRDGGTHLAGLRGALTRT 170

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  YA+ +    K  +S   DD       +LSV + +P+F+ QTK KLVS + +  VEN 
Sbjct: 171 INLYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENL 230

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    +  +NP  A +++  +IE +  R   RK RE   RKTA+    LPGKLADC +
Sbjct: 231 VNEKLAEWFEENPQIAKQVVGKIIEAAFAREAARKARELTRRKTAMDVASLPGKLADCQE 290

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                 ELF+VEGDSAGGSAKQ R+R NQAVLPLRGKILNV  A  +++  +Q+I  L+ 
Sbjct: 291 KDPSKAELFLVEGDSAGGSAKQGRSRQNQAVLPLRGKILNVERARFDRMLGSQEIGTLIT 350

Query: 519 ALGCRT 524
           A+G   
Sbjct: 351 AMGTGI 356


>gi|207107910|dbj|BAG71967.1| DNA gyrase subunit B [Gordonia otitidis]
          Length = 396

 Score =  173 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 118/401 (29%), Positives = 191/401 (47%), Gaps = 36/401 (8%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           GISVVNALS ++ + +      + Q ++   P   ++       K GT + F  D +IF 
Sbjct: 1   GISVVNALSTKVELEINYGGYHWEQTYNYAKPGPLIK--GDATRKTGTTVRFWADSEIFE 58

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSC--------------DKEIAEKYGI------ 257
               + A  + +  Q  A+L+  +    +               D++ AEK         
Sbjct: 59  TTT-YSAETVARRLQEMAFLNKGLTITLTDRRPQTAAADAVVEGDEDTAEKPKTAEEETT 117

Query: 258 ------PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
                 P    +++P GL  Y++     ++ I   +     +  G     VE A+ W   
Sbjct: 118 APAVSKPRTRTYHYPDGLVDYIKHLNRTKTPIHQSVIGFTAKGPGH---EVEIAMQWNSG 174

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVG 368
               + ++ NTI T EGGTHE G R ALT  + KYA   +   ++   +  DD+      
Sbjct: 175 YSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLLKEKDGKLTGDDIREGLAA 234

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP EA  +++  ++ ++ 
Sbjct: 235 VISVKVADPQFEGQTKTKLGNTEVKSFVQRTCNEHLGHWFEANPAEAKIIVKKAVDSAQA 294

Query: 429 RLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
           R+  RK RE V RKTA     LPGKLADC        E++ VEGDSAGGSA   R+   Q
Sbjct: 295 RMAARKARELVRRKTATDIGGLPGKLADCRSIDPTKCEVYFVEGDSAGGSANSGRDSMYQ 354

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528
           A+LP+RGKI+NV  A  +++  N ++  ++ A G     ++
Sbjct: 355 AILPIRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEF 395


>gi|194477393|gb|ACF74793.1| DNA gyrase subunit B [Halorubrum distributum]
          Length = 357

 Score =  173 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 129/367 (35%), Positives = 186/367 (50%), Gaps = 18/367 (4%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSP---LEKKEKVRNKRGTRITFRPDPKIFGDK 219
           NALS+ L V V R   +F  +F+ G P        +  +     GT I F PD +IF   
Sbjct: 1   NALSELLEVEVKRDGGVFRHRFAGGEPAEDGFERVRDMESGESTGTEIRFWPDEEIFETT 60

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F  + L    +  A+L+  V+     D++  E       E F + GG++ ++    E 
Sbjct: 61  -EFQTSTLANRLRELAFLNSGVEIRLVDDRDDTE-------ETFKYDGGIREFVAYLNET 112

Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHESGLRVAL 338
           RS I  E+   + E  G H   VE A+   EE    + ++ N I T EGGTH +G + AL
Sbjct: 113 RSPIHEEVIYFEDETDGVH---VEVAMQATEELQGSVHAFANNINTREGGTHLTGFKTAL 169

Query: 339 TRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  YA           ++  +D+      ++SV   +P+F GQTKTKL + + +  V
Sbjct: 170 TRTVNDYANEHGLVDDLDANLKGEDVREGLTAVVSVKHPDPQFEGQTKTKLGNSEVRGVV 229

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455
           E+A  +    +  +NP  A K++    E +  R   +K  E   RK+A+    LPGKLAD
Sbjct: 230 ESATHEKLGTFFEENPDTAEKVVHKAAEAARARKAAKKAEELTRRKSALESTALPGKLAD 289

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C        ELF+VEGDSAGGSAKQ RNR NQA+LPL+GKILNV     ++I  N +I  
Sbjct: 290 CQTRDPTEAELFVVEGDSAGGSAKQGRNRENQAILPLKGKILNVEKHRLDRILENDEIRA 349

Query: 516 LVQALGC 522
           L+ A+G 
Sbjct: 350 LITAIGA 356


>gi|148762375|dbj|BAF63889.1| DNA gyrase subunit B [Halobacillus salinus]
          Length = 325

 Score =  173 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 119/336 (35%), Positives = 172/336 (51%), Gaps = 15/336 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG SVVNALS +L V V     I+ Q FSRG+P   L+   +  +  GTRI
Sbjct: 1   YKVCGGLHGVGASVVNALSTKLEVFVHLNGNIYYQSFSRGVPDEDLKVIGET-DITGTRI 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PDP+IF +   +    L    +  A+L+  +       +   E             G
Sbjct: 60  QFKPDPEIFTETEEYKFETLANRLRELAFLNRGLTITVDDKRTEEEAVEYYY------EG 113

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+ +Y++     R  +    F     +      ++E A+ + +     I SY N I T E
Sbjct: 114 GIVSYVEHMNRTREALHEPFFV----EDEQDEISIEIALQYNDGFASNIYSYANNIHTYE 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTHESG +  LTR I  YA      +    ++  DD+      I+S+   +P+F GQTK
Sbjct: 170 GGTHESGFKTGLTRVINDYARKNNMFKETDPNLTGDDVREGLTAIISIKHPDPQFEGQTK 229

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443
           TKL + +A+   +    + F  +L +NP  A  ++E  +  S  R+  +K RE   RK+A
Sbjct: 230 TKLGNSEARTVTDALFSEGFSKFLFENPSMAKNIVEKGLMASRARMAAKKARELTRRKSA 289

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADCS   A  +EL+IVEGDSAGGSAK
Sbjct: 290 LEVSNLPGKLADCSSKDAKVSELYIVEGDSAGGSAK 325


>gi|207107902|dbj|BAG71963.1| DNA gyrase subunit B [Gordonia hydrophobica]
          Length = 406

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 127/411 (30%), Positives = 200/411 (48%), Gaps = 33/411 (8%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           GISVVNALS ++ + + R    +SQ ++   P    E      ++ GT ++F  DP IF 
Sbjct: 1   GISVVNALSTKVQLDIKRNGANWSQTYTHAEPGPLEE--GAPTDETGTTVSFWADPNIFE 58

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI------------------------AE 253
               F+   + +  Q  A+L+  +    + ++                          A+
Sbjct: 59  TT-EFNIETIARRLQEMAFLNKGLTITLTDERIHEAVLEAEAEETEDGDASIKTEEQKAD 117

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
                +   +++P GL  Y++  L NR+             KGT    VE A+ W E   
Sbjct: 118 AVAKVKTRVYHYPDGLVDYIKH-LNNRTKAPIHKSVIGITAKGTGH-EVEIAMQWNEGFA 175

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
             + ++ NTI T EGGTHE G R ALT  + KYA   +   ++   +  DD+      ++
Sbjct: 176 ESVHTFANTINTAEGGTHEEGFRAALTSTVNKYAFDKKLIKEKDGKLSGDDIREGLAAVI 235

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV + +P+F GQTKTKL + + +  V+    +    +   NP EA  ++    +  + RL
Sbjct: 236 SVKVADPQFEGQTKTKLGNTEVKSFVQKTCNEHLALWFDANPAEAKTIIRKAADSQQARL 295

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             R+ R+ V RKTA     LPGKLADC  N     E++IVEGDSAGGSAK  R+   QA+
Sbjct: 296 AARRARDLVRRKTATDIGGLPGKLADCRSNDPSKCEVYIVEGDSAGGSAKSGRDSMYQAI 355

Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           LP+RGKI+NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 356 LPIRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDIAKLRYHKIVL 406


>gi|15551679|emb|CAC69427.1| DNA gyrase B subunit [Serratia proteamaculans]
          Length = 323

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 103/334 (30%), Positives = 172/334 (51%), Gaps = 15/334 (4%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG+SVVNALS++L + + R+  +  Q ++ G P +PL+   +  +
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYAMGEPQAPLKVVGET-D 59

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           + GT + F P  + F +   F+   L K     + L+  V       +   E       +
Sbjct: 60  QTGTTVRFWPSYETFTNNVEFEYDILAKRLHELSLLNSGVSVRLKDKRTDKE-------D 112

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F++ GG+K +++   +N++ I   +F   T K       VE A+ W +     I  + N
Sbjct: 113 HFHYEGGIKAFVEYLNKNKTPIHPNVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTN 169

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I   +GGTH  G R A+TR +  Y +      K  IS   DD     + ++SV + +P+
Sbjct: 170 NIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPK 229

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQRE 437
           F+ QTK KLVS + +  VE  + +     L++NP +A  ++  +I+        R+ +  
Sbjct: 230 FSSQTKDKLVSSEVKTAVETLMNEKLVVNLMENPSDAKIVVGKIIDAARAREAARKAREM 289

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
             RK A+    LPGKLADC +     +EL++VEG
Sbjct: 290 TRRKGALDLAGLPGKLADCQERDPALSELYLVEG 323


>gi|207107886|dbj|BAG71955.1| DNA gyrase subunit B [Gordonia aichiensis]
          Length = 407

 Score =  173 bits (438), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 125/413 (30%), Positives = 199/413 (48%), Gaps = 36/413 (8%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           GISVVNALS ++ + +      + Q +    P      +     K GT + F  DP+IF 
Sbjct: 1   GISVVNALSTKVELEINYGGYHWEQTYDYAKPGPL--VQGAATRKTGTTVRFWADPEIFE 58

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------EIAEKYGI------ 257
               + A  + +  Q  A+L+  +    +  +              + AEK         
Sbjct: 59  TTT-YSAETVARRLQEMAFLNKGLTITLTDRRPQTAAADAVVEGDDDTAEKPKNAEEEAS 117

Query: 258 ------PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
                 P    +++P GL  Y++     ++ I   +     +  G     VE A+ W   
Sbjct: 118 TPAVTQPRTRTYHYPDGLVDYIKHLNRTKTPIHQSVIGFTAKGTGH---EVEIAMQWNSG 174

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVG 368
               + ++ NTI T EGGTHE G R ALT  + KYA   +   ++   +  DD+      
Sbjct: 175 YSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLLKEKDGKLSGDDIREGLAA 234

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           ++SV + +P+F GQTKTKL + + +  V+    +   H+   NP EA  +++  ++ ++ 
Sbjct: 235 VISVKVADPQFEGQTKTKLGNTEVKSFVQKTCNEHLSHWFEANPAEAKIIVKKAVDSAQA 294

Query: 429 RLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
           RL  R+ RE V RKTA     LPGKLADC  N     E++IVEGDSAGGSAK  R+   Q
Sbjct: 295 RLAARRARELVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSAGGSAKSGRDSMYQ 354

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           A+LP+RGKI+NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 AILPIRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDLAKLRYHKIVL 407


>gi|196019940|ref|XP_002119073.1| hypothetical protein TRIADDRAFT_63040 [Trichoplax adhaerens]
 gi|190577077|gb|EDV18441.1| hypothetical protein TRIADDRAFT_63040 [Trichoplax adhaerens]
          Length = 303

 Score =  173 bits (438), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 89/197 (45%), Positives = 126/197 (63%), Gaps = 2/197 (1%)

Query: 410 QNPIEATKLLEWVIERSEERLRRRKQREVNRKT-AIRKLRLPGKLADCSQNIAHGTELFI 468
            NP +A  ++  + E +  R   RK R+++RK    +   LPGKLA+C +     +ELF+
Sbjct: 1   MNPKDAKTIIGRMAESAIAREAARKARDLSRKQIGNQISTLPGKLANCQEKDPAKSELFL 60

Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528
           VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ N+ +I  L+ ALG     + 
Sbjct: 61  VEGDSAGGSAKQGRDRKIQAILPLKGKILNVERARFDKMLNSAEIGTLITALGVVLEDKE 120

Query: 529 RE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTK 587
            +   LRY K+IIMTDADVDGAHI +LLLTFF++ M  LIE+ +L++  PPL+++ +G  
Sbjct: 121 FDLTKLRYHKIIIMTDADVDGAHIRTLLLTFFFRYMPGLIEKGYLYIAQPPLYKVKRGQS 180

Query: 588 SVYAHDEEHKQKILEEF 604
             Y  DE   +  L+  
Sbjct: 181 DTYLKDELALRNYLKSI 197


>gi|307343872|emb|CBJ19541.1| gyrase B subunit [Micromonospora sp. SR4]
          Length = 354

 Score =  173 bits (438), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 104/360 (28%), Positives = 179/360 (49%), Gaps = 9/360 (2%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V + +   ++ Q+++   P    +   +  ++ G+ + F PDP +F     FD   + + 
Sbjct: 1   VEIHKDGFVWRQQYTASKPSPLDK--GETTDRTGSAVAFWPDPDVFETV-DFDFQTIYRR 57

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            Q  A+L+  +      ++   E+ G   +  F + GG+  +++    +++ I   +   
Sbjct: 58  LQEMAFLNRGLTIHLLDERVAEEENGRQREVTFCYKGGIADFVRHLNASKTPIHKTVVEF 117

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             E++G    ++E A+ W E     + ++ NTI T EGGTHE G R ALT  + KY    
Sbjct: 118 AGEEEG---MSLEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRAALTSLVNKYGAEK 174

Query: 350 QN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
           +  K    +  +D+      I+SV +  P+F GQTKTKL +   +  V+    +    + 
Sbjct: 175 KLLKSDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNEWLVDWF 234

Query: 409 VQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
            +NP EA  ++ +           ++ ++   RK+ +    +PGKLADC       +E+F
Sbjct: 235 DRNPAEAKVIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVF 294

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           IVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG      
Sbjct: 295 IVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGIHDD 354


>gi|118201792|gb|ABK79709.1| DNA gyrase subunit b [Roseisalinus antarcticus]
          Length = 357

 Score =  173 bits (438), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 126/366 (34%), Positives = 189/366 (51%), Gaps = 13/366 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L + + R       +F  G  +  L        K GT + F      F +   +
Sbjct: 1   NALSVWLELRIWRNGKAHYARFEHGDTVEHLRVTGPSEGKTGTEVRFLGSTDTFSNL-DY 59

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L K  +  A+L+  V+     ++        P + E ++ GG+K +++    ++S 
Sbjct: 60  DFHTLEKRLRELAFLNSGVRIILEDER-----PAEPVRVELFYEGGVKEFVKYLDRSKSG 114

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           +  E      E++G    TVE A+ W +   E    + N I   +GGTH +G R ALTR 
Sbjct: 115 MLPEPIHVIGEREGI---TVEAAMWWNDTYHENVLPFTNNIPQRDGGTHMAGFRSALTRT 171

Query: 342 IKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + KYA  T   +   ++   DD+      +LSV + +P+F+ QTK KLVS + +  VEN 
Sbjct: 172 VTKYATDTGIAKREKVNFTGDDMREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENL 231

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    +  +NP  A  ++  ++E ++ R   RK RE   RKTA+    L GKL DCS+
Sbjct: 232 IGEKLAEWFEENPAAAKGIVSKIVEAAQAREAARKARELTRRKTAMDVNYLAGKLKDCSE 291

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
             A  TELF+VEGDSAGGSA+  R+R  QAVLPLRGKILNV  A  +++  +Q+I +LV 
Sbjct: 292 KDATKTELFLVEGDSAGGSAQTGRDRRTQAVLPLRGKILNVERARFDRMLGSQEIGNLVM 351

Query: 519 ALGCRT 524
           ALG   
Sbjct: 352 ALGTGI 357


>gi|164456701|dbj|BAF97843.1| gyrase B subunit [Vibrio navarrensis]
          Length = 356

 Score =  173 bits (438), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 122/366 (33%), Positives = 191/366 (52%), Gaps = 14/366 (3%)

Query: 168 ELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARL 227
           ++ +T+ R   I +Q +  G+P  PL          GT + F P  + F +   F    L
Sbjct: 1   KVQLTIYRGGHIHTQTYHHGVPQVPLTVVGDTEK-TGTTVRFWPSAETFTNI-EFHYDIL 58

Query: 228 LKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEI 287
            K  +  ++L+  V      ++E  +K      + F + GG++ ++     N++ I  ++
Sbjct: 59  AKRLRELSFLNSGVSIKLQDEREEDKK------DHFMYEGGIQAFVTHLNRNKTPIHEKV 112

Query: 288 FTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYA 346
           F   TE++     +VE A+ W +     I  + N I   +GGTH +G R ALTR +  Y 
Sbjct: 113 FHFNTERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNTYM 170

Query: 347 ELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF 404
           +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE+A+ +  
Sbjct: 171 DKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKL 230

Query: 405 DHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHG 463
             +L +NP EA ++   +I+ +  R   RK R    RK A+    LPGKLADC +     
Sbjct: 231 ADFLAENPSEAKQVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPAL 290

Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523
           +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC 
Sbjct: 291 SELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCG 350

Query: 524 TRSQYR 529
                 
Sbjct: 351 IGRDEY 356


>gi|93277212|gb|ABF06424.1| gyrase B [Streptomyces sp. C35]
          Length = 376

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 190/377 (50%), Gaps = 17/377 (4%)

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  + V V      ++Q++  G+P +PL++ E      GT +TF  D  IF    
Sbjct: 2   VVNALSTRVAVEVKTDGHRWTQEYKLGVPTAPLQRHEATEE-TGTSVTFWADGDIFETT- 59

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEI-----------AEKYGIPEKEEFYFPGGL 269
            +    L +  Q  A+L+  ++   + ++E             ++    +   +++ GG+
Sbjct: 60  DYSFETLSRRFQEMAFLNKGLRINLTDERESAKATAGADEAGEDEKHEVKSVSYHYEGGI 119

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
             +++     +  +          +      ++E A+ W       + S+ N I T EGG
Sbjct: 120 VDFVKYLNSRKGEVIHPTVIDLEAEDRERHLSLEVAMQWNGGYTEGVYSFANIIHTHEGG 179

Query: 329 THESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           THE G R ALT  I KYA   +   ++  ++  DD+      I+SV + EP+F GQTKTK
Sbjct: 180 THEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISVKLSEPQFEGQTKTK 239

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-R 445
           L + + +  V+  + +    +L +NP EA  ++   I  +  R+  RK R++ R+  +  
Sbjct: 240 LGNTEVKTFVQKVVYEHLADWLDRNPNEAADIVRKGIAAATARVAARKARDLTRRKGLLE 299

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
              LPGKL+DC  N     E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV  A  +
Sbjct: 300 TASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKXGRNPEYQAILPIRGKILNVEKARID 359

Query: 506 KIRNNQQIMDLVQALGC 522
           +I  NQ+I  ++ A G 
Sbjct: 360 RILQNQEIQAMISAFGT 376


>gi|223717683|emb|CAX46421.1| gyrase B subunit [Vibrio natriegens]
          Length = 350

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 124/360 (34%), Positives = 195/360 (54%), Gaps = 14/360 (3%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           +S+++ +T+ R   I +Q +  G P +PL       +K GT+I F P  + F +   F  
Sbjct: 1   MSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQIRFWPSSETFTNT-EFHY 58

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             L K  +  ++L+  V    S ++E        + + F + GG++ ++Q    N++ I 
Sbjct: 59  DILAKRLRELSFLNSGVSIKLSDERE------EDKHDHFMYEGGIQAFVQHLNTNKTPII 112

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
            +IF    E++     +VE A+ W +     I  + N I   +GGTH +G R ALTR + 
Sbjct: 113 EKIFHFNFERED--GISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRTLN 170

Query: 344 KYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE+A+ 
Sbjct: 171 TFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMG 230

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNI 460
           +    +LV+NP EA  +   +I+ +  R   RK R    RK A+    LPGKLADC +  
Sbjct: 231 EKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKD 290

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ AL
Sbjct: 291 PALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 350


>gi|318066813|emb|CBY89118.1| DNA gyrase subunit B [Chromohalobacter nigrandesensis]
          Length = 349

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 125/360 (34%), Positives = 191/360 (53%), Gaps = 16/360 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           ISVVNALS+EL +TV R   ++ Q +  G+P +PLE   K   + GT++ F+P  + F +
Sbjct: 1   ISVVNALSEELKLTVWRAGQVYEQIYHHGVPDAPLEVVGKT-EQSGTQVNFKPSTETFAN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++  AE       E F++ GGL+ ++     
Sbjct: 60  I-EFHYDILAKRLRELSFLNSGVAIRLLDERSGAE-------ELFHYEGGLRAFVDHLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++         + G     VE A+ W +     I  Y N I  ++GGTH +G R A
Sbjct: 112 NKATLNPVFHFETQREDGI---GVEVAMQWNDTFSENIFCYTNNIPQNDGGTHLAGFRAA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRTLNHYIETEGLLKKAKVNTAGDDAREGLTAIVSVKVPDPKFSSQTKEKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  +      YLV+ P EA  ++  +++ +  R   RK      RK A+    LPGKLA
Sbjct: 229 VEQEMGRQLGDYLVEQPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLA 288

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 289 DCQEKDPSLSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 348


>gi|89143188|emb|CAJ57491.1| DNA gyrase subunit B [Microbacterium keratanolyticum]
          Length = 359

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 111/358 (31%), Positives = 182/358 (50%), Gaps = 15/358 (4%)

Query: 179 IFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLS 238
           +++  F+ G        K     + GT I+F PD +IF D   FD   L    Q  A+L+
Sbjct: 3   VWNHAFANGGHPQQGLVKGAATEETGTTISFWPDAEIFTDTVEFDYDTLRTRFQQMAFLN 62

Query: 239 GRVKTCWSCDKEIAEKYGIPEKEE--------FYFPGGLKTYLQT--KLENRSLISSEIF 288
             ++     ++E   +    + E         F++  GL  Y++   ++ +  +++ EI 
Sbjct: 63  KGLRIELHDEREGTAQEIEKDGEVIVELRNDVFFYERGLVDYVEYLNRIRHAEVVNDEII 122

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
              +E     + ++E A+ W       + +Y NTI T EGGTHE G R ALT  + KYA 
Sbjct: 123 AFDSE-DTVRKISLEVAMQWTTGYTENVFTYANTINTHEGGTHEEGFRAALTTLVNKYAR 181

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                 ++  ++  DD+      ++S+ + EP+F GQTKTKL + +A+  V+  + D   
Sbjct: 182 ANNLLKEKDDNLSGDDVREGLTAVISIKLGEPQFEGQTKTKLGNTEAKAFVQKVVGDQLG 241

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGT 464
            +  +NP +A  ++   I+ +  R+  RK RE  R+ +      +P KL DC+      +
Sbjct: 242 DWFDRNPNQAKNVVRKAIDAATARMAARKARETARRKSVFESAAMPDKLKDCTSKDPSIS 301

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           E+F+VEGDSAGGSA Q R+   QA+L LRGKILNV  A  +K   N+++  ++QA G 
Sbjct: 302 EIFLVEGDSAGGSAVQGRDPHTQAILALRGKILNVERARLDKALGNREVQAMIQAFGT 359


>gi|299855525|gb|ADJ57304.1| DNA gyrase subunit B [Pseudomonas fluorescens]
          Length = 370

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 130/381 (34%), Positives = 198/381 (51%), Gaps = 17/381 (4%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS+ L +TV R   I+ Q +  G+P +P+    +     GT+I F+P  + F +   F 
Sbjct: 2   ALSEILVLTVRRSGKIWEQTYVHGVPQAPMAIVGE-SETTGTQIHFKPSAETFKNIH-FS 59

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L K  +  ++L+  V      ++   E       E F + GGL+ ++     N++ +
Sbjct: 60  WDILAKRIRELSFLNSGVGIVXKDERSGKE-------ELFKYEGGLRAFVDYLNTNKTPV 112

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
           +         + G     VE A+ W +     +  + N I   +GGTH  G R ALTR +
Sbjct: 113 NQVFHFNVQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 169

Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  VE  +
Sbjct: 170 NTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 229

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQN 459
              F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPGKLADC + 
Sbjct: 230 GKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 289

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
               +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++  L+ A
Sbjct: 290 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 349

Query: 520 LGCRT-RSQYREEDLRYEKVI 539
           LGC   R +Y  + LRY  +I
Sbjct: 350 LGCGIGREEYNIDKLRYHNII 370


>gi|261488456|emb|CAU94903.1| DNA gyrase subunit B [Pelomonas aquatica]
          Length = 330

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 102/323 (31%), Positives = 166/323 (51%), Gaps = 27/323 (8%)

Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178
           + H   P +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VN LS  L +TV +   
Sbjct: 1   DKHE--PKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNGLSKWLRLTVRQGGK 58

Query: 179 IFSQKFSRGIPLS------------PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAAR 226
           +   +F++GIP +            P++      +KRGT + F PD +IF     +    
Sbjct: 59  VHYIEFAKGIPQNGESVMVDGAETRPMKVIGDT-DKRGTEVHFLPDTEIFQQNNDYHYDI 117

Query: 227 LLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSE 286
           L K  +  ++L+  VK     ++   E         F + GG+K +++   + ++ +   
Sbjct: 118 LAKRLRELSFLNNGVKIRLVDERNNKEDN-------FAYAGGVKGFVEFINKGKTTLHPN 170

Query: 287 IFTGKTEK--KGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRGIK 343
           IF    EK         VE A+ W +  N  +  + N I   +GGTH +GLR A+TR I 
Sbjct: 171 IFHAVGEKQSDQGTTVGVEVAMQWNDGFNENVLCFTNNIPQRDGGTHLTGLRAAMTRVIN 230

Query: 344 KYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
           KY E  +   K  + +  DD+      ++SV + EP+F+ QTK KLVS + +  VE+ + 
Sbjct: 231 KYIEDNELAKKAKVEVAGDDMREGLACVVSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVS 290

Query: 402 DPFDHYLVQNPIEATKLLEWVIE 424
                YL++NP++A  +   +++
Sbjct: 291 RLLTDYLLENPLDAKTICGKILD 313


>gi|13487311|gb|AAK27488.1|AF343325_1 DNA gyrase B [Cycloclasticus sp. NOP-122G1]
          Length = 362

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 129/366 (35%), Positives = 198/366 (54%), Gaps = 17/366 (4%)

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           + +G P+ PL+         GT + F+P    F +   F    L K  +  ++L+  V+ 
Sbjct: 9   YKKGEPVEPLKVVGPTEK-TGTSLRFKPSIGTFSNI-EFHFDLLAKRLRELSFLNSGVRI 66

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
             S ++   E       E F + GG+K ++    +N+S I   I     +K       VE
Sbjct: 67  RLSDERTAKE-------EIFEYEGGIKAFVNHLNKNKSQIHENIIYINVDKNDV---NVE 116

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISD 360
            A+ W +     I  Y N I   +GGTH +G R  LTR + +Y E +    K+ ++   D
Sbjct: 117 VALQWNDSYQENIFCYTNNIPQRDGGTHLAGFRAGLTRTLNQYIEGSGLAKKQKVTTSGD 176

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D       +LSV + +P+F+ QTK KLVS + +  VE++L +    +L++NP EA ++  
Sbjct: 177 DAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKSIVESSLAEALQEFLLENPTEAKEIAG 236

Query: 421 WVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
            ++E +  R   RK      RK+A+    LPGKLADC +     +E+F+VEGDSAGGSAK
Sbjct: 237 KMLEAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKDPALSEIFLVEGDSAGGSAK 296

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
           Q R+R  QA+LPL+GKILNV  A  +K+ +  ++  L+ ALGC   + +Y+ E+LRY K+
Sbjct: 297 QGRDRRTQAILPLKGKILNVEKARFDKMLSPDEVGTLITALGCGIGKEEYKPENLRYHKI 356

Query: 539 IIMTDA 544
           IIMTDA
Sbjct: 357 IIMTDA 362


>gi|58415308|emb|CAH04912.1| DNA gyrase subunit B [Leifsonia xyli subsp. cynodontis]
          Length = 351

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 111/351 (31%), Positives = 171/351 (48%), Gaps = 14/351 (3%)

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           +  G+P +PLE+ E+     GT I F P P+ F     FD   L    Q  A+L+  ++ 
Sbjct: 2   YRNGVPQAPLEQGEET-EATGTTIVFWPSPETFETV-EFDYDTLRTRFQQMAFLNKGLRI 59

Query: 244 CWSCDKE-------IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KK 295
             +  +          ++   P  E F +  GL  Y+      +            E + 
Sbjct: 60  AITDQRTALGSLEGQVDEESEPRGEVFLYEKGLTDYVHYLNAAKKAEVVHDEIISFELED 119

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
              +  +E A+ W       + +Y NTI T EGGTHE G R ALT  + +YA        
Sbjct: 120 TDRKIALEVAMQWTTSYNESVFTYANTINTHEGGTHEEGFRAALTTLVNRYAREKNILKD 179

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
           +  ++  DD+      ++SV + EP+F GQTKTKL + +A+  V+  + D    +  +NP
Sbjct: 180 KDDNLSGDDVREGLTAVISVKLSEPQFEGQTKTKLGNTEAKAFVQKVVGDQLADWFDRNP 239

Query: 413 IEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEG 471
            +A +++   ++ +  R+  RK RE  R+  +     +PGKL DC       +E+FIVEG
Sbjct: 240 NQAKEIIRKALQAATARIVARKARETARRKGLLESGGMPGKLKDCQSKDPTLSEIFIVEG 299

Query: 472 DSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           DSAGGSA Q RN   QA+LPLRGKILNV  A  ++   N ++  ++ A G 
Sbjct: 300 DSAGGSAVQGRNPETQAILPLRGKILNVEKARLDRALANNEVQAMITAFGA 350


>gi|15551705|emb|CAC69413.1| DNA gyrase B subunit [Proteus vulgaris]
          Length = 323

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 106/334 (31%), Positives = 170/334 (50%), Gaps = 15/334 (4%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG+SVVNALS++L +T+ R   I  Q +  G+P   L+       
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKLELTIHRDGKIHQQIYRHGVPDDRLKVIGDTEK 60

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             GT + F P  + F  +  F    L K  +  ++L+  V       ++  E       +
Sbjct: 61  -SGTFVRFWPSLETFKGETEFQYDILAKRLRELSFLNSGVSIRLIDKRDNRE-------D 112

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F++ GG+K +++    N++ I   +F   TEK G     VE  + W +     +  + N
Sbjct: 113 HFHYKGGIKAFVEYLSRNKTPIHQNVFYFSTEKDGI---GVEVGMLWNDGFQENVYCFTN 169

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPE 378
            I   +GGTH  G R A+TR +  Y +      K  IS   DD     + + SV + +P+
Sbjct: 170 NIPQRDGGTHLVGFRTAMTRTLNNYMDKEGFNKKSKISATGDDAREGLIAVGSVKVPDPK 229

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQRE 437
           F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+        R+ +  
Sbjct: 230 FSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKIVVGKIIDAARAREAARKAREM 289

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
             RK A+    LPGKLADCS+     +EL++VEG
Sbjct: 290 TRRKGALDLGGLPGKLADCSERDPAFSELYLVEG 323


>gi|169840071|ref|ZP_02873259.1| DNA gyrase subunit B [candidate division TM7 single-cell isolate
           TM7a]
          Length = 99

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 49/97 (50%), Positives = 62/97 (63%), Gaps = 2/97 (2%)

Query: 53  EGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDN 112
           EGLE VR RPGMYIG T  + LHHL  E++DN++DE +AG  + I V +     + V DN
Sbjct: 1   EGLEAVRKRPGMYIGSTSSRGLHHLVWEIVDNSVDEALAGVCDKITVKILEGNIIEVTDN 60

Query: 113 GRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149
           GRGIPV  H     KSTLE++LT LHAGG    +  +
Sbjct: 61  GRGIPVGMHK--TGKSTLEVVLTVLHAGGNLTTTITK 95


>gi|223717681|emb|CAX46420.1| gyrase B subunit [Vibrio natriegens]
          Length = 350

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 125/360 (34%), Positives = 195/360 (54%), Gaps = 14/360 (3%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LS+++ +T+ R   I +Q +  G P +PL       +K GT+I F P  + F +   F  
Sbjct: 1   LSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQIRFWPSSETFTNT-EFHY 58

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             L K  +  ++L+  V    S ++E        + + F + GG++ ++Q    N++ I 
Sbjct: 59  DILAKRLRELSFLNSGVSIKLSDERE------EDKHDHFMYEGGIQAFVQHLNTNKTPII 112

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
            +IF    E++     +VE A+ W +     I  + N I   +GGTH +G R ALTR + 
Sbjct: 113 EKIFHFNFERED--GISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRTLN 170

Query: 344 KYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE+A+ 
Sbjct: 171 TFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMG 230

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNI 460
           +    +LV+NP EA  +   +I+ +  R   RK R    RK A+    LPGKLADC +  
Sbjct: 231 EKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKD 290

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ AL
Sbjct: 291 PALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 350


>gi|318066811|emb|CBY89117.1| DNA gyrase subunit B [Chromohalobacter marismortui]
          Length = 349

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 123/360 (34%), Positives = 187/360 (51%), Gaps = 16/360 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +TV R   ++ Q +  G+P SPL    K     GT++ F+P    F +
Sbjct: 1   VSVVNALSEELKLTVWRAGQVYEQIYHHGVPDSPLSVVGKTEK-SGTQVNFKPSTDTFAN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++  AE       E F++ GGL+ ++     
Sbjct: 60  I-EFHYDILAKRLRELSFLNSGVAIRLLDERSGAE-------ELFHYEGGLRAFVDHLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++         + G     VE A+ W +     I  Y N I   +GGTH +G R A
Sbjct: 112 NKATLNPVFHFETQREDGI---GVEVAMQWNDTFSENIFCYTNNIPQHDGGTHLAGFRAA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRTLNHYIETEGLLKKAKVNTAGDDAREGLTAIVSVKVPDPKFSSQTKEKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  +      YLV+ P +A  ++  +++ +  R   RK      RK A+    LPGKLA
Sbjct: 229 VEQEMGRQLGDYLVERPNDAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLA 288

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 289 DCQEKDPSLSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 348


>gi|51571609|emb|CAH18971.1| gyrase B [Myxococcus macrosporus]
          Length = 354

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 121/366 (33%), Positives = 190/366 (51%), Gaps = 16/366 (4%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           N LS+   V V R   ++ Q +++GIP SP  +     +KRGT I F+PD  +      F
Sbjct: 1   NFLSEWFKVRVQRNGVVYEQSYAQGIPDSPPREVG-TTDKRGTHIAFKPDATVMELV-EF 58

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L +  +  A+L+  +      ++   E         F F GG+ ++++   +++  
Sbjct: 59  NFDTLSQRLRELAFLNAGLHITIRDERTNKEHD-------FKFDGGISSFVEYLNKSKQT 111

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +  +     TE++G    T++ A+ W +     I ++ N I T EGG+H SG + ALTR 
Sbjct: 112 LHDKPIAFSTEREGV---TLDIAMQWNDGYDERIYTFANNINTHEGGSHLSGFKAALTRT 168

Query: 342 IKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +  YAE     + +      +D       ++SV +  P+F GQTKTKL + + +  VE  
Sbjct: 169 LNSYAEKGNLWKDLKETPTGEDAREGLSAVISVKLTNPQFEGQTKTKLGNSEVKGLVEQM 228

Query: 400 LRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
           + D    +L + P+ A K++  +          R+ +  V RK  +    LPGKLADC  
Sbjct: 229 VNDQLGSFLEETPMVAKKVVAKIGDACRARLAARKARETVRRKGVLDGGGLPGKLADCQS 288

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
              + +EL+IVEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  EK+  + +I+ L+ 
Sbjct: 289 RDPNESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTSAEIVTLIT 348

Query: 519 ALGCRT 524
           ALG   
Sbjct: 349 ALGTGI 354


>gi|156536664|gb|ABU80436.1| gyrase B [Photorhabdus temperata]
          Length = 337

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 117/348 (33%), Positives = 181/348 (52%), Gaps = 15/348 (4%)

Query: 167 DELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAAR 226
           ++L + + R   +  Q +  G+P SPL+   +   + GTR+ F P    F +   F    
Sbjct: 1   EKLELVIRRDGKVHEQTYHLGVPQSPLKVVGET-EQTGTRVRFWPSMDTFSNNTEFQHDI 59

Query: 227 LLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSE 286
           L K  +  ++L+  V           E       + F++ GG+K +++   +N++ I   
Sbjct: 60  LAKRLRELSFLNSGVSIRLLDKLTNIE-------DHFHYKGGIKAFVEFLNKNKTPIHPN 112

Query: 287 IFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY 345
           +F   TEK       VE A+ W +     I  + N I   +GGTH  G R A+TR +  Y
Sbjct: 113 VFYFSTEKDSI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSY 169

Query: 346 AEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDP 403
            +      K  +S   DD     V ++SV + +P+F+ QTK KLVS + +  VE  + + 
Sbjct: 170 MDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEK 229

Query: 404 FDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAH 462
              YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLADC +    
Sbjct: 230 LVEYLLENPNDAKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPA 289

Query: 463 GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
            +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 290 LSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 337


>gi|148879786|emb|CAM32248.1| DNA gyrase beta subunit [Sinorhizobium medicae]
          Length = 389

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 139/395 (35%), Positives = 205/395 (51%), Gaps = 16/395 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV--RNKRGTRIT 208
           SGGLHG+G+SVVNALS  L VTV R    +   F  G  + PL         N+ GT +T
Sbjct: 1   SGGLHGLGVSVVNALSTRLEVTVYRNGEEYFIAFEHGDVVEPLRTVGPAVPANRTGTSVT 60

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F P P  F     FD   LL+  +  A+L+  V   +   +         E   F++ GG
Sbjct: 61  FWPSPATFDFVV-FDKDVLLRRMRELAFLNSGVTVKFLDAR-----VEGAEPTVFFYEGG 114

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT-----VEWAIAWCEEN-PEITSYCNTI 322
           ++  ++    N  +I+++    +  +KG   GT     ++ A+ W      +I ++ N I
Sbjct: 115 IRAMVEYSDRNEKVINAKPIVIRGVRKGNRNGTEIDVTIDIAMQWNTGYRDKILAFTNNI 174

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAG 381
              +GG H +G R ALTR + ++AE     K+ ISI +DD+      ++SV + +P+F+ 
Sbjct: 175 PQRDGGNHVAGFRAALTRTMSQFAEANLTGKQKISITADDIKDGLTAVISVKVPDPKFSS 234

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNR 440
           QTK KLVS + Q  V   + +    +L +NP E  K+++            R  +  V  
Sbjct: 235 QTKDKLVSQEVQGPVTQLVNEVLQVWLDENPAEGKKIVQKMAQAALAREAARLARETVRS 294

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K+ +    LP KLADC     H TE+FIVEGDSAGGSAK  R+R  QA+LPLRGK+LNV 
Sbjct: 295 KSKLDIASLPDKLADCQSRKPHETEVFIVEGDSAGGSAKTGRDRKFQAILPLRGKVLNVE 354

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
            A  +KI  ++QI  L+ ALG     ++  + LRY
Sbjct: 355 RARMDKILQSEQIGTLIMALGTGIMEEFNADKLRY 389


>gi|209863319|gb|ACI88759.1| DNA gyrase subunit B [Aeromonas sp. JH106]
          Length = 353

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 125/365 (34%), Positives = 194/365 (53%), Gaps = 16/365 (4%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F    L 
Sbjct: 1   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEILA 58

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F
Sbjct: 59  KRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVF 111

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
              TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +
Sbjct: 112 HFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMD 168

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                 K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +   
Sbjct: 169 KEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLA 228

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +
Sbjct: 229 DFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALS 288

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC  
Sbjct: 289 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGI 348

Query: 525 RSQYR 529
                
Sbjct: 349 GRDEY 353


>gi|193788059|dbj|BAG50530.1| DNA gyrase subunit B [bacterium GMW-31]
 gi|193788061|dbj|BAG50531.1| DNA gyrase subunit B [bacterium GMW-33]
 gi|193788063|dbj|BAG50532.1| DNA gyrase subunit B [bacterium GMW-35]
 gi|193788067|dbj|BAG50534.1| DNA gyrase subunit B [bacterium GMW-38]
          Length = 347

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 122/355 (34%), Positives = 191/355 (53%), Gaps = 15/355 (4%)

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
            R   ++ Q +  G P +PL++     +  GT + F P P IF D   +    L K  + 
Sbjct: 1   RRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTL-YHYEILAKRLRE 59

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE
Sbjct: 60  LSFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTE 112

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350
           + G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +     
Sbjct: 113 QDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYS 169

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++
Sbjct: 170 KKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLE 229

Query: 411 NPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IV
Sbjct: 230 NPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIV 289

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           EGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC  
Sbjct: 290 EGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGI 344


>gi|62084042|dbj|BAD91400.1| DNA gyrase B subunit [Shewanella hafniensis]
 gi|62084044|dbj|BAD91401.1| DNA gyrase B subunit [Shewanella putrefaciens]
 gi|62084046|dbj|BAD91402.1| DNA gyrase B subunit [Shewanella putrefaciens]
          Length = 358

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 122/365 (33%), Positives = 195/365 (53%), Gaps = 15/365 (4%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS +L +T+ R   ++ Q ++ G+P +P+++        GT I F P    F D   F 
Sbjct: 1   ALSKKLQMTIRRAGKVYEQFYTHGVPDAPIKEIGDATK-TGTEIRFWPSEDTFSDV-EFH 58

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L K  +  ++L+  V      +++        + E F + GG+  ++     N++ +
Sbjct: 59  FEILAKRVRELSFLNSGVGIRLVDERDN-------KNEFFKYEGGISAFVDYLNRNKTPV 111

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
           + ++F    E++     TVE A+ W +     I  + N I   +GGTH +G R ALTR +
Sbjct: 112 NKDVFHFMQERED--GITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLAGFRGALTRNL 169

Query: 343 KKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             Y E      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE  +
Sbjct: 170 NNYMENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTM 229

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQN 459
            +  + YL++NP +A  ++  +++ +  R   RK R    RK A+    LPGKLADC + 
Sbjct: 230 GEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEK 289

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
               +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ A
Sbjct: 290 DPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITA 349

Query: 520 LGCRT 524
           LGC  
Sbjct: 350 LGCGI 354


>gi|302566245|pdb|3NUH|B Chain B, A Domain Insertion In E. Coli Gyrb Adopts A Novel Fold
           That Plays A Critical Role In Gyrase Function
          Length = 420

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 81/174 (46%), Positives = 115/174 (66%), Gaps = 1/174 (0%)

Query: 436 REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
               RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GK
Sbjct: 6   EXTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGK 65

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASL 554
           ILNV  A  +K  ++Q++  L+ ALGC   R +Y  + LRY  +II TDADVDG+HI +L
Sbjct: 66  ILNVEKARFDKXLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIXTDADVDGSHIRTL 125

Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           LLTFFY++  +++E+ H+++  PPL+++ +G +  Y  D+E   +        G
Sbjct: 126 LLTFFYRQXPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAXDQYQISIALDG 179



 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGE    QL ET  D   R  LRV +   +       
Sbjct: 335 FEQALDWLVKESRRGLSIQRYKGLGEXNPEQLWETTXDPESRRXLRVTVKDAI----AAD 390

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                L G   + R  FI+E A    ++ 
Sbjct: 391 QLFTTLXGDAVEPRRAFIEENALKAANID 419


>gi|215271440|emb|CAR48209.1| gyrase B subunit [Vibrio alginolyticus]
 gi|215271442|emb|CAR48210.1| gyrase B subunit [Vibrio alginolyticus]
 gi|215271444|emb|CAR48211.1| gyrase B subunit [Vibrio alginolyticus]
 gi|215271446|emb|CAR48212.1| gyrase B subunit [Vibrio alginolyticus]
          Length = 349

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 121/359 (33%), Positives = 193/359 (53%), Gaps = 14/359 (3%)

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225
           S+++ +T+ R   I +Q +  G P +PL       +K GT+I F P  + F +   F   
Sbjct: 1   SEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQIRFWPSAETFSNT-EFHYD 58

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
            L K  +  ++L+  V      ++E        + + F + GG++ ++     N++ I  
Sbjct: 59  ILAKRLRELSFLNSGVSIKLVDEREAD------KHDHFMYEGGIQAFVDHLNTNKTPIIE 112

Query: 286 EIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKK 344
           +IF   +E++     +VE A+ W +     I  + N I   +GGTH +G R ALTR +  
Sbjct: 113 KIFHFNSERED--GISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRTLNS 170

Query: 345 YAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRD 402
           + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE+A+ +
Sbjct: 171 FMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGE 230

Query: 403 PFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIA 461
               +L++NP EA  +   +I+ +  R   RK R    RK A+    LPGKLADC +   
Sbjct: 231 KLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDP 290

Query: 462 HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
             +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ AL
Sbjct: 291 ALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 349


>gi|323522322|gb|ADX94788.1| gyrase B [Serratia symbiotica]
          Length = 320

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 102/331 (30%), Positives = 171/331 (51%), Gaps = 15/331 (4%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG+SVVNALS++L + + R+  +  Q +  G P +PL+   +  +
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYGHGEPQAPLKVVGET-D 59

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           + GT + F P  + F +   F+   L K  +  ++L+  V       +   E       +
Sbjct: 60  QTGTMVRFWPSYQTFTNVTEFEYDILAKRLRELSFLNSGVSIRLKDKRTDRE-------D 112

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F++ GG+K +++   +N++ I   +F   T K       VE A+ W +     I  + N
Sbjct: 113 HFHYEGGIKAFVEYLNKNKTPIHPNVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTN 169

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I   +GGTH  G R A+TR +  Y E      K  IS   DD     + ++SV + +P+
Sbjct: 170 NIPQRDGGTHLVGFRTAMTRTLNSYMEKEGYSKKAKISATGDDAREGLIAVVSVKVPDPK 229

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQRE 437
           F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+        R+ +  
Sbjct: 230 FSSQTKDKLVSSEVKTAVETLMNEKLVDYLMENPTDAKIVVGKIIDAARAREAARKAREM 289

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFI 468
             RK A+    LPGKLADC +     +EL++
Sbjct: 290 TRRKGALDLAGLPGKLADCQERDPALSELYL 320


>gi|307343818|emb|CBJ19514.1| gyrase B subunit [Micromonospora sp. GUI37]
          Length = 348

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 104/354 (29%), Positives = 179/354 (50%), Gaps = 9/354 (2%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V + +   ++ Q+++   P    +   +  ++ G+ + F PDP +F     FD   + + 
Sbjct: 1   VEIHKDGFVWRQQYTASKPSPLDK--GETTDRTGSAVAFWPDPDVFETV-DFDFQTIYRR 57

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            Q  A+L+  +      ++   ++ G   +  F + GG+  +++    +++ I   +   
Sbjct: 58  LQEMAFLNRGLTIHLLDERVPEDEDGRQREVTFCYKGGIADFVRHLNASKNPIHKTVVEF 117

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             E++G    +VE A+ W E     + ++ NTI T EGGTHE G R ALT  + KY    
Sbjct: 118 FGEEEG---MSVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRAALTTLVNKYGTEK 174

Query: 350 QN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
           +  K    +  +D+      I+SV +  P+F GQTKTKL +   +  V+    +    + 
Sbjct: 175 KLLKADEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNEWLVDWF 234

Query: 409 VQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
            +NP EA  ++ +           ++ ++   RK+ +    +PGKLADC       +E+F
Sbjct: 235 DRNPAEAKVIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVF 294

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
           IVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG
Sbjct: 295 IVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALG 348


>gi|237712689|ref|ZP_04543170.1| DNA topoisomerase IV subunit B [Bacteroides sp. D1]
 gi|229447267|gb|EEO53058.1| DNA topoisomerase IV subunit B [Bacteroides sp. D1]
          Length = 167

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 58/181 (32%), Positives = 89/181 (49%), Gaps = 14/181 (7%)

Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
            +  N++   L  AL          + LRY KVI+ TDADVDG HI  LL+TFF Q   D
Sbjct: 1   MVYENEEFNLLQAALNIEDGL----DGLRYNKVIVATDADVDGMHIRLLLITFFLQFFPD 56

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           LI++ H++++  PLFR+    K++Y + EE +   + E   +     EI+RFKGLGE+  
Sbjct: 57  LIKKGHVYILQTPLFRVRNKKKTIYCYSEEERVNAINELSPN----PEITRFKGLGEISP 112

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
            + K          L +V + K        ++ +   MG    ER  FI +     +D+ 
Sbjct: 113 DEFKHFIG--KDMRLEQVSLRK----TDAVKELLEFYMGKNTMERQNFIIDNLVIEEDLA 166

Query: 686 T 686
           +
Sbjct: 167 S 167


>gi|149003441|ref|ZP_01828330.1| DNA gyrase subunit B [Streptococcus pneumoniae SP14-BS69]
 gi|147758624|gb|EDK65622.1| DNA gyrase subunit B [Streptococcus pneumoniae SP14-BS69]
          Length = 128

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 46/83 (55%), Positives = 66/83 (79%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I+V 
Sbjct: 10  AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVF 69

Query: 101 LDGNGFLTVVDNGRGIPVENHPK 123
           ++ +  +TVVD+GRGIPV+   K
Sbjct: 70  IEPDDSITVVDDGRGIPVDIQEK 92


>gi|261488470|emb|CAU94910.1| DNA gyrase subunit B [Roseateles aquatilis]
          Length = 339

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 107/323 (33%), Positives = 170/323 (52%), Gaps = 27/323 (8%)

Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178
           + H   P +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV R+  
Sbjct: 1   DKHE--PKRSASEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKTLRLTVRREGK 58

Query: 179 IFSQKFSRGIP------------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAAR 226
           I   +F +GIP             SP++   +  +KRGT + F PD +IF   + F    
Sbjct: 59  IHQLEFKKGIPQDRVIEVRDGVETSPMKIVGET-DKRGTEVHFLPDTEIFTQNSEFHYDI 117

Query: 227 LLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSE 286
           L K  +  ++L+  VK     ++   E         F F GG++ +++   + ++ +   
Sbjct: 118 LAKRLRELSFLNNGVKIRLVDERNNKEDN-------FAFAGGVRGFVEFINKGKTALHPN 170

Query: 287 IFTGKTEK--KGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRGIK 343
           IF  + +K         VE ++ W +  N  +  + N I   +GGTH +GLR A+TR I 
Sbjct: 171 IFHAQGDKLSDQNTNIGVEVSMQWNDGFNENVLCFTNNIPQRDGGTHLTGLRAAMTRVIN 230

Query: 344 KYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
           KY E  +   K  + I  DD+      ++SV + EP+F+ QTK KLVS + +  VE+ + 
Sbjct: 231 KYIEDNELAKKAKVDIAGDDMREGLACVISVKVPEPKFSSQTKDKLVSSEVRGPVEDVVA 290

Query: 402 DPFDHYLVQNPIEATKLLEWVIE 424
                +L++NPI+A  +   +I+
Sbjct: 291 SKLTDWLLENPIDAKIVCGKIID 313


>gi|29652679|gb|AAO87309.1| DNA gyrase B [Listeria monocytogenes]
          Length = 149

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 65/146 (44%), Positives = 92/146 (63%)

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I  N++I  +  
Sbjct: 3   RNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEEIRTIFT 62

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
           A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ M  L++  ++++  PP
Sbjct: 63  AMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGYIYIAQPP 122

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEF 604
           L++I  G +  Y + +   +  L   
Sbjct: 123 LYQIKHGKQIEYVYSDGQLEDYLASL 148


>gi|118201828|gb|ABK79727.1| DNA gyrase subunit b [Thalassobacter stenotrophicus]
          Length = 356

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 119/366 (32%), Positives = 188/366 (51%), Gaps = 14/366 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALSD L + V R+      +F  G     L+   +     GT + F    + F +   +
Sbjct: 1   NALSDWLELRVWREGKEHIARFEHGDTAEHLKVVSETEE-TGTEVRFLASLQTFSNL-EY 58

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L    +  A+L+  V+     ++        P + E ++ GG++ +++    +++ 
Sbjct: 59  NFKTLENRLRELAFLNSGVRIILEDER-----PAEPLRTELFYEGGVQEFVRYLDRSKTS 113

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
             ++      EK       +E A+ W +     +  + N I   +GGTH +GLR ALTR 
Sbjct: 114 GMADPIFITGEKDDI---GIEVAMWWNDSYHETVLPFTNNIPQRDGGTHLAGLRGALTRT 170

Query: 342 IKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  YA+ +   +   ++   DD       +LSV + +P+F+ QTK KLVS + +  VE  
Sbjct: 171 INAYAQSSGIAKREKVNFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGL 230

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    +  ++P EA  ++  +IE +  R   RK RE   RKTA+    LPGKLADC +
Sbjct: 231 MNEKLSEWFEEHPNEAKTIVSKIIEAALAREAARKARELTRRKTAMDVASLPGKLADCQE 290

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+F+VEGDSAGGSAKQ R+R NQAVLPLRGKILNV  A  +++  +Q+I  L+ 
Sbjct: 291 KDPANSEIFLVEGDSAGGSAKQGRSRRNQAVLPLRGKILNVERARFDRMLGSQEIGTLIT 350

Query: 519 ALGCRT 524
           ALG   
Sbjct: 351 ALGTGI 356


>gi|307343814|emb|CBJ19512.1| gyrase B subunit [Micromonospora sp. GUI28]
          Length = 348

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 104/354 (29%), Positives = 179/354 (50%), Gaps = 9/354 (2%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V + +   ++ Q+++   P    +   +  ++ G+ + F PDP +F     FD   + + 
Sbjct: 1   VEIHKDGFVWRQQYTASKPSPLDK--GETTDRTGSAVAFWPDPDVFETV-DFDFQTIYRR 57

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            Q  A+L+  +      ++   ++ G   +  F + GG+  +++    +++ I   +   
Sbjct: 58  LQEMAFLNRGLTIHLLDERVPEDEDGRQREVTFCYKGGIADFVRHLNASKNPIHKTVVEF 117

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             E++G    +VE A+ W E     + ++ NTI T EGGTHE G R ALT  + KY    
Sbjct: 118 FGEEEG---MSVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRAALTTLVNKYGGEK 174

Query: 350 QN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
           +  K    +  +D+      I+SV +  P+F GQTKTKL +   +  V+    +    + 
Sbjct: 175 KLLKADEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNEWLVDWF 234

Query: 409 VQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
            +NP EA  ++ +           ++ ++   RK+ +    +PGKLADC       +E+F
Sbjct: 235 DRNPAEAKVIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVF 294

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
           IVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG
Sbjct: 295 IVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALG 348


>gi|118201830|gb|ABK79728.1| DNA gyrase subunit b [Thalassobius gelatinovorus]
          Length = 357

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 114/366 (31%), Positives = 181/366 (49%), Gaps = 13/366 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L + + R       KF  G     L        ++GT + F      F +   +
Sbjct: 1   NALSVWLELRIWRNGKEHYAKFEHGDCTEHLRVVGDANGEKGTEVRFLASTDTFSNL-EY 59

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  A+L+  V+     ++        P K E Y+ GG+K +++    ++  
Sbjct: 60  SFETLEKRLRELAFLNSGVRIILEDER-----PAEPLKTELYYDGGVKEFVKYLDRSKQS 114

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           + +E      E+       VE ++ W +     +  + N I   +GGTH +G R ALTR 
Sbjct: 115 LMAEPIYVIGERDDI---VVEMSMWWNDSYHETVLPFTNNIPQRDGGTHLAGFRGALTRT 171

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + KYA+ +    K  I+   DD       +LSV + +P+F+ QTK KLVS + +  VEN 
Sbjct: 172 LGKYAQDSGIAKKEKINFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENL 231

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL-PGKLADCSQ 458
           + +    +L +NP EA  ++  ++E +  R   RK R++ R+     +     KL DCS 
Sbjct: 232 MNEKLSEWLEENPNEAKVIVSKIVEAALAREAARKARDLTRRKNPMDMNFLSSKLKDCSD 291

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TE+F+VEGDSAGGSA+  R+R  QA+LPL+GKILNV  A  +++  +Q+I ++V 
Sbjct: 292 KDPVNTEIFLVEGDSAGGSAQTGRDRKTQAILPLKGKILNVERARFDRMLGSQEIGNMVM 351

Query: 519 ALGCRT 524
           ALG   
Sbjct: 352 ALGTGI 357


>gi|318066841|emb|CBY89132.1| DNA gyrase subunit B [Halomonas eurihalina]
          Length = 349

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 121/360 (33%), Positives = 191/360 (53%), Gaps = 16/360 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +T+ RQ  +  Q +  G  ++PL        + G+R+ FRP P+ F +
Sbjct: 1   VSVVNALSEELRLTIWRQGQVHEQLYRHGEAVAPLSVVG-TTEQTGSRVHFRPSPETFHN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V    + ++         ++E F++ GGL+ ++     
Sbjct: 60  I-EFHYDILAKRLRELSFLNSGVAIRLTDER-------TGKEELFHYEGGLRAFVDHLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N+++++         + G     VE A+ W +     I  Y N I   +GGTH +G R +
Sbjct: 112 NKTVLNPVFHFNVEREDGV---GVEVAMQWNDTFAENIFCYTNNIPQGDGGTHLAGFRAS 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRTLNHYIEAEGLLKKAKVNTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  +   F  YLV+ P EA  ++  +++ +  R   RK      RK A+    LPGKLA
Sbjct: 229 VEQEMGRQFSEYLVERPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLA 288

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 289 DCQEKDPSLSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 348


>gi|297517941|ref|ZP_06936327.1| DNA gyrase subunit B [Escherichia coli OP50]
          Length = 394

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 72/146 (49%), Positives = 105/146 (71%), Gaps = 1/146 (0%)

Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523
           +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC 
Sbjct: 8   SELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCG 67

Query: 524 T-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI 582
             R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++  PPL+++
Sbjct: 68  IGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKV 127

Query: 583 TQGTKSVYAHDEEHKQKILEEFKKHG 608
            +G +  Y  D+E   +        G
Sbjct: 128 KKGKQEQYIKDDEAMDQYQISIALDG 153



 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ L+   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 309 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 364

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 365 QLFTTLMGDAVEPRRAFIEENALKAANID 393


>gi|318066855|emb|CBY89139.1| DNA gyrase subunit B [Halomonas koreensis]
          Length = 349

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 122/360 (33%), Positives = 190/360 (52%), Gaps = 16/360 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +T+ R   +  Q +  G+P +PL+   K   + G+R+ FRP  + F +
Sbjct: 1   VSVVNALSEELKLTIWRNGLVHEQVYHHGVPAAPLDVVGKT-EQSGSRVHFRPSSETFHN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++         ++E F++ GGLK ++     
Sbjct: 60  I-EFHYDVLAKRLRELSFLNSGVAIRLIDER-------TGKEELFHYEGGLKAFVDHLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N+++++         + G     VE A+ W +     I  Y N I   +GGTH +G R +
Sbjct: 112 NKTVLNPVFHFNVEREDGV---GVEVAMQWNDTFAENIFCYTNNIPQRDGGTHLAGFRAS 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y +      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRTLNHYIDAEGLLKKSKVNTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  L   F  YL++ P EA  ++  +++ +  R   RK      RK A+    LPGKLA
Sbjct: 229 VEQELGRLFADYLIEKPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLA 288

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +ELF+VEGDSAGGSAKQ R R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 289 DCQEKDPSLSELFLVEGDSAGGSAKQGRERRTQAILPLKGKILNVEKARFDKMLSSAEVG 348


>gi|318066823|emb|CBY89123.1| DNA gyrase subunit B [Halomonas almeriensis]
          Length = 349

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 123/360 (34%), Positives = 189/360 (52%), Gaps = 16/360 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +T+ RQ  +  Q +  G+P+ PL        + G+R+ FRP  + F +
Sbjct: 1   VSVVNALSEELKLTIWRQGQVHEQVYQHGVPVQPLSVVGST-EQSGSRVHFRPSTETFHN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V    + ++   E       E F++ GGL+ ++     
Sbjct: 60  I-EFHYDILAKRLRELSFLNSGVAIRLTDERSGKE-------ELFHYEGGLRAFVDHLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N+++++           G     VE A+ W +     I  Y N I   +GGTH +G R +
Sbjct: 112 NKTVLNPVFHFNVERDDGV---GVEVAMQWNDTFAENIFCYTNNIPQGDGGTHLAGFRAS 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  +S   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRTLNHYVEAEGLLKKSKVSTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  +   F  YLV+ P EA  ++  +++ +  R   RK      RK A+    LPGKLA
Sbjct: 229 VEQEMGRQFSDYLVERPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLA 288

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 289 DCQEKDPSLSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 348


>gi|170178316|gb|ACB10205.1| DNA gyrase subunit B [Kribbella antibiotica]
          Length = 369

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 128/369 (34%), Positives = 191/369 (51%), Gaps = 7/369 (1%)

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT ITF P P +F     F    L    +  A+L+  ++     ++    + G P ++ F
Sbjct: 3   GTTITFWPSPGVFETTT-FSFETLSTRFREYAFLNKGLELVIRDERPEFIEDGQPAEQSF 61

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            +  GL  Y++     R  +  ++   +  +      ++E A+ W       + ++ N I
Sbjct: 62  RYEAGLVDYVKYLTGIRETVHRDVIAFEAAQ-ADGSLSLEVAMQWSGSYQESVHTFANAI 120

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  +  + E      K+   +  DD+      I+SV + EP+F 
Sbjct: 121 NTHEGGTHEEGFRAALTSLVNSFGEDQGMIKKKEDRLTGDDIREGLTAIISVKLAEPQFE 180

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE--V 438
           GQTKTKL + + +  V+  + D    +  QNP E  +++      +  R+  RK R+   
Sbjct: 181 GQTKTKLGNTEVKGFVQRVVNDKLGAWFEQNPAEGREIIRKASAAASARIAARKARDLAR 240

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
           NRK  +    LPGKLADC        E++IVEGDSAGGSAK  R    QA+LP+RGKILN
Sbjct: 241 NRKGLLAGGGLPGKLADCQSTNPEECEVYIVEGDSAGGSAKGGREPKFQAILPIRGKILN 300

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  +K+  N +++ ++ ALG      + EE LRY K++IM DADVDG HI +LLLT 
Sbjct: 301 VEKARIDKVLQNNEVLAIISALGTGIHEDFDEEKLRYHKIVIMADADVDGQHIRTLLLTL 360

Query: 559 FYQEMYDLI 567
            ++ M  LI
Sbjct: 361 LFRFMRPLI 369


>gi|21218063|dbj|BAB96550.1| DNA gyrase subunit B [Mycobacterium sp. 9912]
          Length = 391

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 121/397 (30%), Positives = 188/397 (47%), Gaps = 35/397 (8%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LS  L V + R    +SQ + R  P +   K+ +   K GT I F  DP IF     +D 
Sbjct: 1   LSTRLEVDIKRDGYEWSQFYDRAQPGTL--KQGEATKKTGTTIRFWADPDIFETT-EYDF 57

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY-------------------------GIPE 259
             + +  Q  A+L+  +    + ++   ++                             +
Sbjct: 58  ETVARRLQEMAFLNKGLTINLTDERVTPDEVVDDVVSDTAEAPKSAQEKAAESTAPHKVK 117

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              F++PGGL  +++     +S I   I   + +  G     VE A+ W       + ++
Sbjct: 118 SRTFHYPGGLVDFVKHINRTKSPIQQSIVDFEGKGSGH---EVEIAMQWNGGYSESVHTF 174

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMISAVGILSVFIRE 376
            NTI T EGGTHE G R ALT  + KY   +     +  ++  DD+      ++SV + E
Sbjct: 175 ANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLTGDDIREGLAAVISVRVAE 234

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F GQTKTKL + + +  V+    +   H+   NP EA  ++   +  ++ RL  RK R
Sbjct: 235 PQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPSEAKTIVNKAVSSAQARLAARKAR 294

Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E V RK+A     LPGKLADC       +EL++VEGDSAGGSAK  R+   QA+LPLRGK
Sbjct: 295 ELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGK 354

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           I+NV  A  +++  N ++  ++ ALG     ++    
Sbjct: 355 IINVEKARIDRVLKNTEVQAIITALGTGIHDEFDLSK 391


>gi|62944556|gb|AAY22126.1| DNA gyrase subunit B [Zymomonas mobilis subsp. pomaceae]
          Length = 349

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 116/358 (32%), Positives = 195/358 (54%), Gaps = 13/358 (3%)

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+ L +TV R     S +F  G+ + PLE   +   KRGT++ F P P  F   
Sbjct: 1   SVVNALSEYLELTVWRDGFEHSMRFEHGVAVKPLEIVGEAAGKRGTKVRFLPSPATFK-I 59

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             FD ++L    +  A+L+  V+   +  +        P+  E ++ GG+  +++     
Sbjct: 60  TEFDFSKLEHRYRELAFLNSGVRLQLTDTR-----PEEPKTVELFYEGGIAAFVKWLDRA 114

Query: 280 RSLISSEIFTGKTEKKGT-HRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
           ++ +  E    + ++        +EW  ++     ++  + N I   +GGTH +  R AL
Sbjct: 115 KTALIPEPVAIQGDRDDVGIEVALEWNDSY---YEQVLCFTNNIPQRDGGTHLAAFRAAL 171

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  YAE +    K  + +  DD+      I+SV + +P+F+ QTK KLVS + ++ +
Sbjct: 172 TRTLNNYAEKSGFLKKEKVQLTGDDMREGLTAIISVKLPDPKFSSQTKDKLVSSEVRQPL 231

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLAD 455
           E+ + D    +L +NP  A  +++ +I+ +  R   ++ RE+ R+   +    LPGKLAD
Sbjct: 232 ESLMADKLAEWLEENPAHAKTIVQKIIDAAAAREAAKRARELTRRKGVMDIASLPGKLAD 291

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           C +     +ELFIVEGDSAGGSAKQ RNR NQA+LPL+GKILN   +  +++ +++++
Sbjct: 292 CQERDPTKSELFIVEGDSAGGSAKQGRNRHNQAILPLKGKILNTERSRLDRMLSSKEV 349


>gi|323364333|gb|ADX42736.1| DNA gyrase subunit B [Bhargavaea cecembensis]
          Length = 337

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 115/343 (33%), Positives = 179/343 (52%), Gaps = 13/343 (3%)

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           F RG     L          G+ + F+ DP+IF +   ++   L    Q  AYL+  ++ 
Sbjct: 4   FERGQISEELRVIGDTEE-TGSEVRFKADPEIFTETTVYEYDILAHRLQELAYLNRGIRI 62

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
             S ++   E+      + +++ GG+K+Y+Q   E++  I  E    + EK G    +VE
Sbjct: 63  TLSDERGEEERS-----DSYHYEGGIKSYVQHINEDKEPIHEEPIFIEGEKDGI---SVE 114

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISD 360
            A+ +       I S+ N I T EGGTHESG + ALTR I  YA  +   +    ++  +
Sbjct: 115 IAMQYNAGYASNIFSFANNINTYEGGTHESGFKTALTRVINDYARKSGLLKDNESNLSGE 174

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D       I+SV   +P+F GQTKTKL + +  + V +   +  + +L++NP  A  ++E
Sbjct: 175 DAREGLTAIVSVKHPDPQFEGQTKTKLGNSEVSQIVNSLFSEGLERFLMENPTGARMIVE 234

Query: 421 W-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
             ++        ++ +    RK+ +    LPGKL+DCS      +EL+IVEGDSAGGSAK
Sbjct: 235 KGLMAARARVAAKKARELTRRKSVLEISNLPGKLSDCSSRDPAISELYIVEGDSAGGSAK 294

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
             R+R  QA+LPLRGKILNV  A   +I +N +I  ++ ALG 
Sbjct: 295 NGRDRHFQAILPLRGKILNVEKANINRILSNTEIRAMITALGT 337


>gi|307343782|emb|CBJ19496.1| gyrase B subunit [Micromonospora peucetia]
          Length = 354

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 104/359 (28%), Positives = 179/359 (49%), Gaps = 9/359 (2%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V + +   ++ Q++    P    +   +  ++ G+ ++F PDP +F     FD   + + 
Sbjct: 2   VEIHKDGFVWRQQYHNSKPGPLDK--GESTDRTGSAVSFWPDPDVFETV-DFDFQTIYRR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            Q  A+L+  +      ++   E+ G   +  F + GG+  +++    +++ I   +   
Sbjct: 59  IQEMAFLNRGLTIHLLDERVPEEEDGRQREVTFCYKGGIADFVRHLNASKNPIHKTVVEF 118

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             E++G    +VE A+ W E     + ++ NTI T EGGTHE G R ALT  + +Y    
Sbjct: 119 GAEEEG---MSVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRAALTSVVNRYGTEK 175

Query: 350 Q-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
           +  K    +  +D+      I+SV +  P+F GQTKTKL +   +  V+    +    + 
Sbjct: 176 KVLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNEWLVDWF 235

Query: 409 VQNPIEATKLLE-WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
            +NP EA  +++            ++ ++   RK+ +    +PGKLADC       +E+F
Sbjct: 236 DRNPAEAKIIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVF 295

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS 526
           IVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG     
Sbjct: 296 IVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNAEVQALITALGTGIHD 354


>gi|119226172|dbj|BAF41065.1| DNA gyrase subunit B [Rhodococcus erythropolis]
          Length = 449

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 129/452 (28%), Positives = 197/452 (43%), Gaps = 59/452 (13%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y +SGGLHGVGISVVNALS  + V + R   ++ Q F   +P   ++         G
Sbjct: 1   SDSYAVSGGLHGVGISVVNALSTRVEVQIKRDGRLWKQDFDMAVPAELVDA--GPAEGTG 58

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK---------- 254
           TR+ F  DP IF     +D   + +  Q  A+L+  +    +  +  AEK          
Sbjct: 59  TRVRFWADPTIFES-TEYDFDVVARRLQEMAFLNKGLTITLTDRRPRAEKAAELDAIADS 117

Query: 255 -----------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                                + E+ +  G              +   E         G 
Sbjct: 118 EGSGAEAAPGSDEGSDLAHAVDAEQAFAEGAQAADAVEATPVEPVKVRERKRTFHYPDGL 177

Query: 298 HRGTVEWAIAWCEENPEITS-------------------YCNTILTDEGG--THESG--- 333
                    +    +P I                     Y  ++ T      THE G   
Sbjct: 178 KDYVTAINKSKTSIHPTILYFEGKGPGHEVEVAMQWNSGYSESVHTFANTINTHEGGTHE 237

Query: 334 --LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
              R ALT  + KYA   +   ++  ++  DD+      +LS  I +P+F GQTKTKL +
Sbjct: 238 EGFRAALTSLVNKYAREKKLIKEKDPNLTGDDIREGLAAVLSAKISDPQFEGQTKTKLGN 297

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLR 448
            + +  V+  + +   H+   NP EA  ++   I  S+ R+  RK RE+  RK+A     
Sbjct: 298 TEVKGFVQRQVSEHVGHWFEANPAEAKVIINKAIASSQARVAARKAREMVRRKSATDIGG 357

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           LPGKLADC       +EL+IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  +  +K+ 
Sbjct: 358 LPGKLADCRSKDPAKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKSRIDKVL 417

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            N ++  ++ ALG     ++  + LRY K+++
Sbjct: 418 KNAEVQAIITALGTGIHEEFDIDKLRYHKIVL 449


>gi|62084048|dbj|BAD91403.1| DNA gyrase B subunit [Shewanella baltica]
 gi|62084050|dbj|BAD91404.1| DNA gyrase B subunit [Shewanella baltica]
 gi|62084052|dbj|BAD91405.1| DNA gyrase B subunit [Shewanella baltica]
 gi|62084054|dbj|BAD91406.1| DNA gyrase B subunit [Shewanella morhuae]
          Length = 358

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 123/365 (33%), Positives = 193/365 (52%), Gaps = 15/365 (4%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS +L +T+ R   ++ Q ++ G+P +P+++        GT I F P    F +   F 
Sbjct: 1   ALSKKLQMTIRRAGKVYEQFYTHGVPDAPIKEIGDATK-TGTEIRFWPSENTFSNI-EFH 58

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L K  +  ++L+  V      +++        + E F + GG+  ++     N++ I
Sbjct: 59  FEILAKRVRELSFLNSGVGIRLIDERDN-------KNELFKYEGGISAFVDYLNRNKTPI 111

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
           + ++F    E+      TVE A+ W +     I  + N I   +GGTH  G R ALTR +
Sbjct: 112 NKDVFHFIQERDD--GITVEVAMQWNDGYQESIFCFTNNIPQRDGGTHLVGFRSALTRNL 169

Query: 343 KKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             Y E      K   S   DD       ++SV + +P+F+ QTK KLVS + +  VE  +
Sbjct: 170 NSYMENEGYNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTM 229

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQN 459
            +  + YL++NP +A  ++  +++ +  R   RK R    RK A+    LPGKLADC + 
Sbjct: 230 GEKLNDYLLENPSDAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEK 289

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
               +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ A
Sbjct: 290 DPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITA 349

Query: 520 LGCRT 524
           LGC  
Sbjct: 350 LGCGI 354


>gi|15551709|emb|CAC69410.1| DNA gyrase B subunit [Proteus mirabilis]
          Length = 323

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 109/334 (32%), Positives = 174/334 (52%), Gaps = 15/334 (4%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG+SVVNALS++L +T+ R   I  Q +  G+P   L+   +  +
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKLELTIHRDGKIHQQIYRSGVPDDRLKVIGET-D 59

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           K GT + F P       +  F    L K  +  ++L+  V       ++  E       +
Sbjct: 60  KSGTFVRFWPSLDTSKGETEFQYDILAKRLRELSFLNSGVSIRLIDKRDNRE-------D 112

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F++ GG+K +++    N++ I   +F   TEK G     VE A+ W +     +  + N
Sbjct: 113 HFHYEGGIKAFVEYLSRNKTPIHQNVFYFSTEKDGI---GVEVAMLWNDGFQENVYCFTN 169

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPE 378
            I    GGTH  G R A+TR +  Y +      K  IS   DD     + ++SV + +P+
Sbjct: 170 NIPQRGGGTHLVGFRTAMTRTLNNYMDKEGFNKKSKISATGDDAREGLIAVISVKVPDPK 229

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
           F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   RK RE+
Sbjct: 230 FSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREM 289

Query: 439 NRKTAIRKLRL-PGKLADCSQNIAHGTELFIVEG 471
            R+     L   PGKLADCS+     +EL++VEG
Sbjct: 290 TRRKGAPDLGGLPGKLADCSERDPAFSELYLVEG 323


>gi|195926956|dbj|BAG68365.1| gyrase B [Campylobacter coli]
          Length = 339

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 128/353 (36%), Positives = 182/353 (51%), Gaps = 18/353 (5%)

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L  TV R   I+ Q+FS G  +S  +   K +   GT I F PD  IF    
Sbjct: 1   VVNALSKKLVATVERNGEIYRQEFSEGKVISEFDIIGKSKK-TGTTIEFWPDDTIFEVT- 58

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   L K  +  AYL+ ++   +  ++       + + E F+F GG+  ++    +  
Sbjct: 59  EFDYDILAKRFRELAYLNPKITINFKDNR-------VDKSESFHFEGGISQFVSDLNKKE 111

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALT 339
           +L     F+   E        VE A+ + +   E   S+ N I T +GGTHE+G R+ LT
Sbjct: 112 ALTKPIFFSVDEED-----VNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLT 166

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y E      ++   I  DD+    + ++SV + EP+F GQTK KL S   +  V 
Sbjct: 167 RVISNYIEANASAREKDSKITGDDVREGLIAVVSVKVPEPQFEGQTKGKLGSSYVRPIVS 226

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
            A  +    Y  +NPIEA  ++   +  +  R   +K RE   +K ++    LPGKLADC
Sbjct: 227 KASFEYLSKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADC 286

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
                  +E+++VEGDSAGGSAKQ R RS QA+LPLRGKILNV  A  +KI  
Sbjct: 287 QSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILK 339


>gi|170177810|gb|ACB10231.1| GyrB [Aeromonas aquariorum]
          Length = 350

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 125/358 (34%), Positives = 193/358 (53%), Gaps = 16/358 (4%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           VT+ R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K 
Sbjct: 1   VTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTL-FHYEILAKR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F  
Sbjct: 59  LRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHF 111

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +  
Sbjct: 112 TTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKE 168

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +
Sbjct: 169 DYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADF 228

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
           L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL
Sbjct: 229 LLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSEL 288

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           +IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC  
Sbjct: 289 YIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGI 346


>gi|15551721|emb|CAC69409.1| DNA gyrase B subunit [Pectobacterium carotovorum]
          Length = 323

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 100/333 (30%), Positives = 172/333 (51%), Gaps = 14/333 (4%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG+ VVNALS++L + + R   +  Q +  G+  +PL    +  N
Sbjct: 1   KFDDNSYKVSGGLHGVGVFVVNALSEKLKLVIHRDGKLHEQTYKHGVAQAPLAVTGET-N 59

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           + GT + F P  + F +   F+   L K  +  ++L+  V      ++E        + +
Sbjct: 60  RTGTTVRFWPSHETFTNVVEFEYEILAKRLRELSFLNSGVSIRLIDEREKD------KAD 113

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            +++ GG+K ++     N++ I   +F   T K       VE A+ W +     I  + N
Sbjct: 114 HYHYDGGIKAFVDYLNRNKTPIHPNVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTN 170

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+
Sbjct: 171 NIPQRDGGTHLAGFRAAMTRTLNTYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPK 230

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQRE 437
           F+ QTK KLVS + +  VE+ + +    YL++NP +A  ++  +I+        R+ +  
Sbjct: 231 FSSQTKDKLVSSEVKAAVESLMNEKLVDYLMENPSDAKIVVGKIIDAARAREAARKARDM 290

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
             RK A+    LPGKLADC +     +EL++VE
Sbjct: 291 TRRKGALDLAGLPGKLADCQERDPALSELYLVE 323


>gi|306517911|emb|CBL53379.1| gyrase B subuni [Photobacterium angustum]
          Length = 362

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 125/372 (33%), Positives = 197/372 (52%), Gaps = 15/372 (4%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           + +T+ R   I+ Q +  G+P +PL          GTRI F P    F +   F    L 
Sbjct: 1   VELTIQRAGHIYQQVYRHGVPDAPLAVIGDTEK-TGTRIRFWPSEDTFTNI-EFHYDILA 58

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           K  +  ++L+  V    S ++E        +++ F + GG++ +++    N++ I  ++F
Sbjct: 59  KRLRELSFLNSGVSINLSDERED------GKEDHFMYEGGIRAFVEHLNRNKTPIHPKVF 112

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
              +E+      +VE A+ W +     I  + N I   +GGTH +G R ALTR +  + +
Sbjct: 113 HFDSERDD--GISVEVAMQWNDGFQESIYCFTNNIPQRDGGTHLAGFRGALTRTLNSFMD 170

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                 K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE+A+ +   
Sbjct: 171 KEGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAAVESAMNEKLA 230

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGT 464
            + ++NP +A  +   +I+ S  R   RK R    RK A+    LPGKLADC +      
Sbjct: 231 EFQLENPADAKTVCTKIIDASRAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPAVF 290

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ A+GC  
Sbjct: 291 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAMGCGI 350

Query: 525 -RSQYREEDLRY 535
            R +Y  + LRY
Sbjct: 351 GRDEYNPDKLRY 362


>gi|215271430|emb|CAR48204.1| gyrase B subunit [Vibrio natriegens]
          Length = 350

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 125/360 (34%), Positives = 195/360 (54%), Gaps = 14/360 (3%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LS+++ +T+ R   I +Q +  G P +PL       +K GT+I F P  + F +   F  
Sbjct: 1   LSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQIRFWPSSETFTNT-EFHY 58

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             L K  +  ++L+  V    S ++E        + + F + GG++ ++Q    N++ I 
Sbjct: 59  DILAKRLRELSFLNSGVSIKLSDERE------EDKHDHFMYEGGIQAFVQHLNTNKTPII 112

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
            +IF    E++     +VE A+ W +     I  + N I   +GGTH +G R ALTR + 
Sbjct: 113 EKIFHFNFERED--GISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRTLN 170

Query: 344 KYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE+A+ 
Sbjct: 171 TFMDKEGFSRKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMG 230

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNI 460
           +    +LV+NP EA  +   +I+ +  R   RK R    RK A+    LPGKLADC +  
Sbjct: 231 EKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKD 290

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ AL
Sbjct: 291 PALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 350


>gi|269118648|ref|YP_003306825.1| DNA topoisomerase (ATP-hydrolyzing) [Sebaldella termitidis ATCC
           33386]
 gi|268612526|gb|ACZ06894.1| DNA topoisomerase (ATP-hydrolyzing) [Sebaldella termitidis ATCC
           33386]
          Length = 226

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 74/233 (31%), Positives = 121/233 (51%), Gaps = 11/233 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S+ +DA SI +L  +E +R +P M+IG    + L +L  E+IDN ++E + G+ N I+V 
Sbjct: 2   SEIFDAKSIAVLGIMEGIRKKPEMFIGSVSAEGLCNLVWEIIDNCVNEALEGFCNTIKVR 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  N  + V DNGRG+PV+ + K   KS LE+ILT  +  G+     Y++S   +  G+ 
Sbjct: 62  LLKNNIIEVSDNGRGLPVDFYEKA-GKSKLEVILTGKYIRGELTGGIYKLSRKKYKGGLV 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPDPKIFGDK 219
            VN LS+ L   V +   ++ QK+ +G+P   ++K  +      GT I FR D +IFG+ 
Sbjct: 121 SVNGLSETLEAVVIKDGKVWYQKYHKGVPSGDIKKTGEKSEYIHGTVIRFRADREIFGE- 179

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
             +D   LL   +        +K     ++         + E FYF G ++ +
Sbjct: 180 LEYDYEILLAKLKEI----RGIKVILCDER----NEAAGKTESFYFNGEIREF 224


>gi|118201774|gb|ABK79700.1| DNA gyrase subunit b [Loktanella vestfoldensis]
          Length = 356

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 119/365 (32%), Positives = 189/365 (51%), Gaps = 12/365 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALSD L + + R+      +F  G  +  L        ++GT ITF      F ++  F
Sbjct: 1   NALSDFLELRIWREGKEHYARFEGGFTVESLRVVGDADGRKGTEITFLAALTTFSNR-DF 59

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L K  +  A+L+  V+      +        P + + ++ GG++ +++    +++ 
Sbjct: 60  DFHILEKRLRELAFLNSGVRIILEDLR-----PAEPLRTDLFYEGGVREFVKYLDRSKTP 114

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           +         E+       VE A+ W +   E+   + N I   +GGTH +G R ALTR 
Sbjct: 115 LMQTPIYVTGERDDI---GVEVAMWWNDSYNEMVLPFTNNIPQRDGGTHLAGFRGALTRA 171

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I KYA  T    K  I++  DD       +LSV + +P+F+ QTK KLVS + +  VEN 
Sbjct: 172 ITKYATETGITKKEKIALTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENL 231

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
           + +  + +  +NP  A  ++  ++E +  R   RK RE+ RK+A+       KL DCS+ 
Sbjct: 232 MGEKLNEWFEENPATAKAIISKIVEAAAAREAARKAREIRRKSAMDVNFNASKLKDCSEK 291

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
               TE+F+VEGDSAGGSA+  R+R  QA+LPL+GKILNV  A  +++ ++Q+I +LV A
Sbjct: 292 DPSKTEVFLVEGDSAGGSAQTGRDRGTQAILPLKGKILNVERARFDRMLSSQEIGNLVMA 351

Query: 520 LGCRT 524
           LG   
Sbjct: 352 LGTGI 356


>gi|170178314|gb|ACB10204.1| DNA gyrase subunit B [Kribbella jejuensis]
          Length = 370

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 125/371 (33%), Positives = 192/371 (51%), Gaps = 8/371 (2%)

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKE 261
            GT ITF   P +F     +    L    +  A+L+  ++     ++ +  ++ G P ++
Sbjct: 2   NGTTITFWASPDVFETTT-YSYETLATRFREYAFLNKGLELVIRDERPDHLDEDGKPLEQ 60

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F +  GL  Y++     R  +  ++ + +         ++E A+ W       + ++ N
Sbjct: 61  SFRYDDGLVDYVKYLTGIRETVHRDVISFEAAAADDT-MSLEVALQWSGSFQESVHTFAN 119

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I T EGGTHE G R ALT  +  + E      K+   +  DD+      I+SV + EP+
Sbjct: 120 AINTHEGGTHEEGFRAALTSLVNSFGEDQGMIKKKEDRLTGDDIREGLTAIISVKLAEPQ 179

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE- 437
           F GQTKTKL + + +  V+  + D    +  QNP E  +++      +  R+  RK R+ 
Sbjct: 180 FEGQTKTKLGNTEVKGFVQRVVNDRLGAWFEQNPAEGREIIRKASAAASARIAARKARDL 239

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
             NRK  +    LPGKLADC        E++IVEGDSAGGSAK  R+   QA+LP+RGKI
Sbjct: 240 ARNRKGLLGGGGLPGKLADCQSTNPEECEVYIVEGDSAGGSAKGGRDPKFQAILPIRGKI 299

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556
           LNV  A  +K+  N ++  ++ ALG      + E+ LRY K++IM DADVDG HI +LLL
Sbjct: 300 LNVEKARIDKVLQNNEVQAIISALGTGIHEDFDEDKLRYHKIVIMADADVDGQHIRTLLL 359

Query: 557 TFFYQEMYDLI 567
           T  ++ M  LI
Sbjct: 360 TLLFRFMRPLI 370


>gi|289597839|gb|ADD12312.1| DNA gyrase subunit B [Alcanivorax sp. W11-5]
          Length = 352

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 119/363 (32%), Positives = 189/363 (52%), Gaps = 16/363 (4%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS+EL +T+ R   +  Q +  G+P  PL+   +     GT + FRP    F +   F 
Sbjct: 1   ALSEELKLTIRRNGKVHEQVYRHGVPNEPLKVVGETEG-TGTTVRFRPSAATFTNI-KFH 58

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L K  +  ++L+  V+     ++         +++ F + GGL  ++      ++ +
Sbjct: 59  YDILAKRLRELSFLNSGVRIHLKDER-------TGQEDLFEYEGGLSAFVAYLNGAKTPL 111

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
           +         + G     VE A+ W +     I  + N I   +GG H +G R ALTR +
Sbjct: 112 NRVFHFQCDREDGI---GVEVALQWNDSYNENIYCFTNNIPQRDGGAHLAGFRAALTRTL 168

Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             Y E      K  ++   DD       ++SV + +P+F+ QTK KLVS + +  VE  +
Sbjct: 169 NSYMENEGFLKKEKVATTGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTM 228

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQN 459
            + F  YL++NP EA ++++ +I+ +  R   RK      RK A+    LPGKLADC + 
Sbjct: 229 SELFQDYLLENPAEAKQIVQKIIDAARARDAARKAREMTRRKGALDIAGLPGKLADCQEK 288

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
               +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++Q++  L+ A
Sbjct: 289 DPALSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 348

Query: 520 LGC 522
           LGC
Sbjct: 349 LGC 351


>gi|170178304|gb|ACB10199.1| DNA gyrase subunit B [Kribbella solani]
 gi|170178306|gb|ACB10200.1| DNA gyrase subunit B [Kribbella solani]
 gi|170178312|gb|ACB10203.1| DNA gyrase subunit B [Kribbella hippodromi]
          Length = 370

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 126/371 (33%), Positives = 192/371 (51%), Gaps = 8/371 (2%)

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKE 261
            GT ITF   P +F     +    L    +  A+L+  ++     ++ +  ++ G P ++
Sbjct: 2   NGTTITFWASPDVFETTT-YSYETLATRFREYAFLNKGLELVIRDERPDHIDEDGKPLEQ 60

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F +  GL  Y++     R  +  ++ + +         ++E A+ W       + ++ N
Sbjct: 61  SFRYADGLVDYVKYLTGIRETVHRDVISFEAATADDT-MSLEVALQWSGSFQESVHTFAN 119

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I T EGGTHE G R ALT  +  + E      K+   +  DD+      I+SV + EP+
Sbjct: 120 AINTHEGGTHEEGFRAALTSLVNSFGEDQGMIKKKEDRLTGDDIREGLTAIISVKLAEPQ 179

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE- 437
           F GQTKTKL + + +  V+  + D    +  QNP E  +++      +  R+  RK R+ 
Sbjct: 180 FEGQTKTKLGNTEVKGFVQRVVNDKLGAWFEQNPAEGREIIRKASAAASARIAARKARDL 239

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
             NRK  +    LPGKLADC        E++IVEGDSAGGSAK  R+   QA+LP+RGKI
Sbjct: 240 ARNRKGLLGGGGLPGKLADCQSTNPEECEVYIVEGDSAGGSAKGGRDPKFQAILPIRGKI 299

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556
           LNV  A  +K+  N ++  ++ ALG      + EE LRY K++IM DADVDG HI +LLL
Sbjct: 300 LNVEKARIDKVLQNNEVQAIISALGTGIHEDFDEEKLRYHKIVIMADADVDGQHIRTLLL 359

Query: 557 TFFYQEMYDLI 567
           T  ++ M  LI
Sbjct: 360 TLLFRFMRPLI 370


>gi|164456675|dbj|BAF97830.1| gyrase B subunit [Vibrio halioticoli]
          Length = 354

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 125/361 (34%), Positives = 191/361 (52%), Gaps = 14/361 (3%)

Query: 168 ELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARL 227
           ++ +T+ R   I +Q +  G P +PL+      +K GT I F P  + F +   F    L
Sbjct: 1   KVTLTIHRGGKIHTQTYKHGEPQAPLKAIGDT-DKTGTEIRFWPSEETFTNI-EFYYDIL 58

Query: 228 LKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEI 287
            K  +  ++L+  V      ++         + + F F GG+K +++    N++ I  +I
Sbjct: 59  AKRLRELSFLNSGVSINLVDER------VEDKSDHFMFEGGIKAFVEHLNTNKTPIIQKI 112

Query: 288 FTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYA 346
           F    E++     TVE A+ W +     I  + N I   +GGTH +G R ALTR +  + 
Sbjct: 113 FYFDIERED--GITVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSALTRTLNTFM 170

Query: 347 ELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF 404
           +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE+A+ +  
Sbjct: 171 DKEGFSKKAKAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKL 230

Query: 405 DHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHG 463
             +LV+NP EA  +   +I+ +  R   RK R    RK A+    LPGKLADC +     
Sbjct: 231 SEFLVENPGEAKIVCGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPAH 290

Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523
           +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L  ALGC 
Sbjct: 291 SELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLNTALGCG 350

Query: 524 T 524
            
Sbjct: 351 I 351


>gi|215271406|emb|CAR48192.1| gyrase B subunit [Vibrio campbellii]
          Length = 350

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 122/360 (33%), Positives = 193/360 (53%), Gaps = 14/360 (3%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LS+++ +T+ R   I +Q +  G P +PL       +K GT+I F P  + F +   F  
Sbjct: 1   LSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQIRFWPSAETFSNT-EFHY 58

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             L K  +  ++L+  V      ++E        + + F + GG++ ++     N++ I 
Sbjct: 59  DILAKRLRELSFLNSGVSIKLVDEREAD------KHDHFMYEGGIQAFVDHLNTNKTPII 112

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
            +IF   +E++     +VE A+ W +     I  + N I   +GGTH +G R ALTR + 
Sbjct: 113 EKIFHFNSERED--GISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRTLN 170

Query: 344 KYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE+A+ 
Sbjct: 171 SFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMG 230

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNI 460
           +    +L++NP EA  +   +I+ +  R   RK R    RK A+    LPGKLADC +  
Sbjct: 231 EKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKD 290

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
               EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ AL
Sbjct: 291 PALFELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 350


>gi|207678276|gb|ACI25152.1| DNA gyrase B [Phaeobacter sp. M5-4.2]
          Length = 345

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 110/353 (31%), Positives = 177/353 (50%), Gaps = 13/353 (3%)

Query: 168 ELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARL 227
            L + + R       +F RG     L+   +  ++ GT + F      F +   +    L
Sbjct: 1   WLELRIWRDGKEHVARFERGDTAEHLKVVGECGDQTGTEVRFLASTDTFSNL-EYSFETL 59

Query: 228 LKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEI 287
            K  +  A+L+  V+     ++          + E ++ GG+K +++    ++S +    
Sbjct: 60  EKRLRELAFLNSGVRIILIDER-----PAERLEVELFYEGGVKEFVKYLDRSKSPVMEAP 114

Query: 288 FTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYA 346
                +K       VE A+ W +     +  + N I   +GGTH +G R ALTR I  YA
Sbjct: 115 IYITGDKDDI---GVEVAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRTINNYA 171

Query: 347 ELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF 404
           + +    K  +S   DD       +LSV + +P+F+ QTK KLVS + +  VE+ + +  
Sbjct: 172 QSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVNEKL 231

Query: 405 DHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHG 463
             +  +NP +A +++  +IE +  R   RK RE   RKTA+    L GKL DCS+     
Sbjct: 232 AEWFEENPNQAKQIVGKIIEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSEKDPSK 291

Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           TE+F+VEGDSAGGSA+  R+R  QA+LPLRGKILNV  A  +++  +Q+I +L
Sbjct: 292 TEVFLVEGDSAGGSAQTGRDRMTQAILPLRGKILNVERARFDRMLGSQEIGNL 344


>gi|106895899|gb|ABE96842.1| DNA gyrase subunit B [Aeromonas caviae]
          Length = 346

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 124/358 (34%), Positives = 193/358 (53%), Gaps = 16/358 (4%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K 
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEILAKR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F  
Sbjct: 59  LRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHF 111

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +  
Sbjct: 112 TTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNNYMDKE 168

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +
Sbjct: 169 DYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADF 228

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
           L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL
Sbjct: 229 LLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSEL 288

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           +IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC  
Sbjct: 289 YIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGI 346


>gi|170178318|gb|ACB10206.1| DNA gyrase subunit B [Kribbella alba]
          Length = 370

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 124/370 (33%), Positives = 192/370 (51%), Gaps = 8/370 (2%)

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEE 262
           GT ITF   P +F     +    L    +  A+L+  ++     ++ +  ++ G P ++ 
Sbjct: 3   GTTITFWASPDVFETTN-YSYETLSTRFREYAFLNKGLELVIRDERPDHIDEDGKPVEQS 61

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           F +  GL  Y++     R  +  ++   +  + G    ++E A+ W       + ++ N 
Sbjct: 62  FKYDDGLVDYVKYLTGIREAVHRDVIAFEAAQ-GEDSLSLEVAMQWSGSYQESVHTFANA 120

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I T EGGTHE G R ALT  +  + E      ++   +  DD+      I+SV +  P+F
Sbjct: 121 INTHEGGTHEEGFRAALTTLVNSFGEDQGMIKRKEDRLTGDDVREGLTAIISVKLGNPQF 180

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-- 437
            GQTKTKL + + +  V+  + D    +  QNP E  +++      +  R+  RK R+  
Sbjct: 181 EGQTKTKLGNTEVKGFVQKVVNDKLGAWFEQNPQEGKEIIRKATAAASARIAARKARDLA 240

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
            NRK  +    LPGKL+DC        E++IVEGDSAGGSAK  R+   QA+LP+RGKIL
Sbjct: 241 RNRKGLLGGGGLPGKLSDCQSTNPEECEVYIVEGDSAGGSAKGGRDPKFQAILPIRGKIL 300

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557
           NV  A  +K+  N ++  ++ ALG      + EE LRY K++IM DADVDG HI +LLLT
Sbjct: 301 NVEKARIDKVLQNNEVQAIISALGTGIHEDFDEEKLRYHKIVIMADADVDGQHIRTLLLT 360

Query: 558 FFYQEMYDLI 567
             ++ M  LI
Sbjct: 361 LLFRFMRPLI 370


>gi|318066817|emb|CBY89120.1| DNA gyrase subunit B [Chromohalobacter sarecensis]
          Length = 349

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 124/360 (34%), Positives = 190/360 (52%), Gaps = 16/360 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +TV R   ++ Q +  G+P SPL+   K     GT++ F+P  + F +
Sbjct: 1   VSVVNALSEELKLTVWRAGQVYEQIYHHGVPDSPLDVVGKTEK-SGTQVNFKPSTETFSN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++  AE       E F++ GGL+ ++     
Sbjct: 60  I-EFHYDILAKRLRELSFLNSGVAIRLLDERSGAE-------ELFHYEGGLRAFVDHLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++         + G     VE A+ W +     I  Y N I  ++GGTH +G R A
Sbjct: 112 NKATLNPVFHFETQREDGI---GVEVAMQWNDTFSENIFCYTNNIPQNDGGTHLAGFRAA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRTLNHYIETEGLLKKAKVNTAGDDAREGLTAIVSVKVPDPKFSSQTKEKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  +      YLV+ P EA  ++  +++ +  R   RK      RK A+    LPGKLA
Sbjct: 229 VEQEMGRQLGDYLVERPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLA 288

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 289 DCQEKDPSLSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSVEVG 348


>gi|302746255|gb|ADL62718.1| GyrB [Morganella sp. RP-42]
          Length = 347

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 113/358 (31%), Positives = 181/358 (50%), Gaps = 15/358 (4%)

Query: 167 DELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAAR 226
           ++L + + R   +  Q +  G P   L    +  +K GTR+ F P    F  +  F    
Sbjct: 1   EKLELVIRRDGKVHEQIYRHGEPQDRLTVVGET-DKTGTRVRFWPSMDTFKGETEFQYDI 59

Query: 227 LLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSE 286
           L K  +  ++L+  V       ++  E       + F++ GG+K +++     ++ I + 
Sbjct: 60  LAKRLRELSFLNSGVSIRLIDKRDGKE-------DHFHYEGGIKAFVEYLSRAKTSIHNN 112

Query: 287 IFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY 345
           +F   TEK       VE ++ W +     +  + N I   +GG H +G R  +T  +  Y
Sbjct: 113 VFYFSTEKDDI---GVEISMQWNDSFQENVYCFTNNIPQRDGGAHLAGFRAVMTCTLNSY 169

Query: 346 AELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDP 403
            E      K  +S   DD     V ++SV + +P+F+ QTK KLVS + +  VE  + + 
Sbjct: 170 IEKEGLNKKSKVSTTGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEK 229

Query: 404 FDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAH 462
              YL +NP +   ++  +I+ +  R   R+ R    RK A+    LPGKLADC +    
Sbjct: 230 LSEYLDENPNDTKIIVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPA 289

Query: 463 GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
            +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+  +Q++  L+ AL
Sbjct: 290 FSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLGSQEVATLITAL 347


>gi|148762463|dbj|BAF63933.1| DNA gyrase subunit B [Bacillus sp. SA-B2]
          Length = 325

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 109/336 (32%), Positives = 173/336 (51%), Gaps = 15/336 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG SVVNALS  L V V R N I   +F +G+P   +E   +  +  GT  
Sbjct: 1   YKVCGGLHGVGASVVNALSTNLEVHVHRDNKIHYLQFKKGVPQGEIEVVGET-DITGTIT 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F PDP+IF +   ++   L +  +  A+L+  +       +  +E         +++ G
Sbjct: 60  HFNPDPEIFNETTTYNFDTLSQRLRELAFLNKGINISIEDKRTDSE------PINYHYEG 113

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDE 326
           G+ +Y++     + ++    F  + E++G    +VE AI + +        + N I T E
Sbjct: 114 GISSYVEYINRTKEILHEP-FYAEGEEQGI---SVEVAIQYNDGFTSNLYSFANNIHTYE 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GG HESG +  LTR I  YA      +    ++  DD+      ++SV   +P+F GQTK
Sbjct: 170 GGMHESGFKTGLTRVINDYARKNNLFKENDPNLSGDDVREGLTAVVSVKHPDPQFEGQTK 229

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTA 443
           TKL + + +   ++   + F  +L +NP  A  ++E  ++        ++ +    RK+A
Sbjct: 230 TKLGNSEVRTVTDSVFSETFSKFLFENPNVAKIVVEKGLMASRARAAAKKARELTRRKSA 289

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADCS   A  +EL+IVEGDSAGGSAK
Sbjct: 290 LEVSNLPGKLADCSSKDAKISELYIVEGDSAGGSAK 325


>gi|318066839|emb|CBY89131.1| DNA gyrase subunit B [Halomonas elongata]
          Length = 349

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 120/360 (33%), Positives = 190/360 (52%), Gaps = 16/360 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +T+ RQ  +  Q +  G  ++PL        + G+R+ FRP  + F +
Sbjct: 1   VSVVNALSEELKLTIWRQGQVHEQIYRHGEAVAPLAVVG-TTEQTGSRVHFRPSSETFQN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V    + ++         ++E F++ GGL+ ++     
Sbjct: 60  I-EFHYDILAKRLRELSFLNSGVAIRLTDER-------TGKEELFHYEGGLRAFVDHLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N+++++         + G     VE A+ W +     I  Y N I   +GGTH +G R +
Sbjct: 112 NKTVLNPVFHFNVEREDGV---GVEVAMQWNDTFAENIFCYTNNIPQGDGGTHLAGFRAS 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRTLNHYIEAEGLLKKAKVNTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  +   F  YLV+ P EA  ++  +++ +  R   RK      RK A+    LPGKLA
Sbjct: 229 VEQEMGRQFSEYLVERPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLA 288

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 289 DCQEKDPSLSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 348


>gi|209863317|gb|ACI88758.1| DNA gyrase subunit B [Aeromonas sp. JH80]
          Length = 353

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 125/365 (34%), Positives = 194/365 (53%), Gaps = 16/365 (4%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F    L 
Sbjct: 1   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPAIFSDTL-FHYEILA 58

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F
Sbjct: 59  KRLRELSFLNSGVSIRLQDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVF 111

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
              TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +
Sbjct: 112 HFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMD 168

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                 K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +   
Sbjct: 169 KEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLA 228

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +
Sbjct: 229 DFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALS 288

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC  
Sbjct: 289 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGI 348

Query: 525 RSQYR 529
                
Sbjct: 349 GRDEY 353


>gi|156946270|gb|ABU98323.1| DNA gyrase subunit beta [Alcanivorax indicus]
          Length = 351

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 126/363 (34%), Positives = 191/363 (52%), Gaps = 17/363 (4%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS EL +T+ R   +  Q +  G+P  PL+     +   GT + FRP    F +   F 
Sbjct: 1   ALSKELRLTIRRAGKVHEQIYRHGVPDEPLKVVGDTQ-TTGTTVRFRPSEDTFTNI-EFH 58

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L K  +  ++L+  V+     ++   E         F + GGL  ++    E ++ +
Sbjct: 59  YDILAKRLRELSFLNSGVRIHLKDERTGKEDL-------FEYEGGLAAFVTYLNEAKTPL 111

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
           +  +   + EK G     VE A+ W +     I  Y N I   +GGTH +G R ALTR +
Sbjct: 112 NKVL-HFQLEKDGI---GVEVALQWNDSYNENIFCYTNNIPQRDGGTHLAGFRAALTRTM 167

Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             Y +      K  +++  DD       ++SV + +P+F+ QTK KLVS + +  VE A+
Sbjct: 168 NNYMDTEGFLKKEKVAVAGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKPAVEQAM 227

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQN 459
            + F  YL++NP EA  +++ +I+ +  R   RK      RK A+    LPGKLADC + 
Sbjct: 228 GERFADYLLENPAEAKLIVQKIIDAARARDAARKAREMTRRKGALDIAGLPGKLADCQEK 287

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
               +EL+IVEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++ ++  L+ A
Sbjct: 288 DPALSELYIVEGDSAGGSAKQGRNRKYQAILPLKGKILNVEKARFDKMLSSAEVGTLITA 347

Query: 520 LGC 522
           LGC
Sbjct: 348 LGC 350


>gi|89143208|emb|CAJ57501.1| DNA gyrase subunit B [Microbacterium resistens]
          Length = 363

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 108/362 (29%), Positives = 176/362 (48%), Gaps = 13/362 (3%)

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
            ++  ++   F+ G       +K +   + GT I+F PDP IF +   FD   L    Q 
Sbjct: 1   KQKGFVWRHSFADGGAPQQKLEKGEATEETGTSISFWPDPAIFQETVEFDYDTLRTRFQQ 60

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGI--------PEKEEFYFPGGLKTYLQTKLENRSLISS 285
            A+L+  ++     ++E +                + F +  GL  Y++     R     
Sbjct: 61  MAFLNKGLRIELLDEREGSTVEEEVDGTVVTRQRADVFLYERGLVDYVEYLNHVRKAEVV 120

Query: 286 EIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
                  E +  T + ++E A+ W       + +Y NTI T EGGTHE G R ALT  + 
Sbjct: 121 NDEIIAFESEDTTRKISLEVAMQWTTGYTENVFTYANTINTHEGGTHEEGFRAALTTLVN 180

Query: 344 KYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
           +YA       ++  ++  DD+      ++S+ + EP+F GQTKTKL + +A+   +  + 
Sbjct: 181 RYARANNILKEKDDNLTGDDVREGLTAVISIKLGEPQFEGQTKTKLGNTEAKAFTQKVVG 240

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNI 460
           +    +  +NP +A  ++   +E +  RL  RK RE  R+ +      +P KL DC+   
Sbjct: 241 EELGDWFDRNPKQAKNVVTKAVEAATARLAARKARETARRKSVFESTSMPDKLKDCTSKD 300

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +E+F+VEGDSAGGSA Q R+   QA+L LRGKILNV  A  +K   N+++  ++QA 
Sbjct: 301 PSISEIFLVEGDSAGGSAVQGRDPHTQAILALRGKILNVERARLDKALANKEVQAMIQAF 360

Query: 521 GC 522
           G 
Sbjct: 361 GT 362


>gi|324962660|gb|ADY62432.1| gyrase subunit B [Frankia sp. NRRLB-16306]
          Length = 408

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 107/378 (28%), Positives = 164/378 (43%), Gaps = 59/378 (15%)

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G + V DNGRGIPV  HP      T+E++LTTLHAGGKFD  +Y +SGGLHGVG+
Sbjct: 1   TLLADGGVRVTDNGRGIPVGEHP-VKKIPTVELVLTTLHAGGKFDGQSYAVSGGLHGVGV 59

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS  L V V      + Q +    P +PL K    +    T I+F  DP IF   
Sbjct: 60  SVVNALSTRLDVAVETDGHSWFQPYVASRPAAPLAKTGTSKKTG-TTISFWADPTIFET- 117

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI---------------------------- 251
             +    L +  Q  A+L+  +      ++                              
Sbjct: 118 TTYKYETLYRRLQEMAFLNKGLSITLRDERSAAAKNPALAAKAAEAAEAAAAAGEAEASA 177

Query: 252 ---------------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG 296
                          AE+   P +  F +  GL  ++      +  +   + + +++  G
Sbjct: 178 PETGSVETSSAQTAAAEEVTEPVEVTFKYDNGLVDFVGHLNATKDAVHRSVISLESKGTG 237

Query: 297 TH-RGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI 355
                 +EW   +   N  + ++ NTI T EGGTHE G R ALT  +  YA+     + +
Sbjct: 238 IEAELAMEWNSGY---NESVYTFANTINTHEGGTHEEGFRAALTSAVNAYAKDQNLLKPV 294

Query: 356 SI---------ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
                        DD+      I+SV + +P+F GQTKTKL + +A++ V+         
Sbjct: 295 KAGSKNTDERLSGDDIREGLTAIISVKLAQPQFEGQTKTKLGNTEAKKFVQEMCYAALKD 354

Query: 407 YLVQNPIEATKLLEWVIE 424
           +   N  EA  ++   ++
Sbjct: 355 WFEVNRTEARAIVSKALD 372


>gi|318066805|emb|CBY89114.1| DNA gyrase subunit B [Chromohalobacter beijerinckii]
 gi|318066807|emb|CBY89115.1| DNA gyrase subunit B [Chromohalobacter canadensis]
          Length = 349

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 124/360 (34%), Positives = 189/360 (52%), Gaps = 16/360 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +TV R   ++ Q +  G+P SPL+   K     GT++ F+P  + F +
Sbjct: 1   VSVVNALSEELKLTVWRAGQVYEQIYHHGVPDSPLDVVGKTEK-SGTQVNFKPSTETFAN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++  AE       E F++ GGL+ ++     
Sbjct: 60  I-EFHYDILAKRLRELSFLNSGVAIRLLDERSGAE-------ELFHYEGGLRAFVDHLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++         + G     VE A+ W +     I  Y N I   +GGTH +G R A
Sbjct: 112 NKATLNPVFHFETQREDGI---GVEMALQWNDTFSENIFCYTNNIPQSDGGTHLAGFRAA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRTLNHYIETEGLLKKAKVNTAGDDAREGLTAIVSVKVPDPKFSSQTKEKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  +      YLV+ P EA  ++  +++ +  R   RK      RK A+    LPGKLA
Sbjct: 229 VEQEMGRQLGDYLVERPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLA 288

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 289 DCQEKDPSLSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 348


>gi|15551713|emb|CAC69405.1| DNA gyrase B subunit [Morganella morganii]
          Length = 323

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 101/334 (30%), Positives = 166/334 (49%), Gaps = 15/334 (4%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG+SVVNALS++L + + R   +  Q +  G P   L    +  +
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQIYRHGEPQDRLTVVGET-D 59

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           K GTR+ F P    F  +  F    L K  +  ++L+  V       ++  E       +
Sbjct: 60  KTGTRVRFWPSMDTFKGETEFQYDILAKRLRELSFLNSGVSIRLIDKRDGKE-------D 112

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F++ GG+K +++     ++ I + +F   TEK       VE ++ W +     +  + N
Sbjct: 113 HFHYEGGIKAFVEYLSRAKTSIHNNVFYFSTEKDDI---GVEISMQWNDSFQENVYCFTN 169

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPE 378
            I   +GG H +G R A+TR +  Y E     +        DD     V ++SV + +P+
Sbjct: 170 NIPQRDGGAHLAGFRAAMTRTLNSYIEKEGLNKRSKVSTTGDDAREGLVAVISVKVPDPK 229

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQRE 437
           F+ QTK KLVS + +  VE  + +    YL +NP +   ++  +I+        RR +  
Sbjct: 230 FSSQTKDKLVSSEVKTAVETLMNEKLSEYLDENPNDTKIIVGKIIDAARAREAARRAREM 289

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
             RK A+    LPGKLADC +     +EL++VEG
Sbjct: 290 TRRKGALDLAGLPGKLADCQERDPAFSELYLVEG 323


>gi|307343858|emb|CBJ19534.1| gyrase B subunit [Micromonospora sp. SGA9]
          Length = 360

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 102/366 (27%), Positives = 182/366 (49%), Gaps = 9/366 (2%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           + V + +   ++ Q+++   P    +   +  ++ G+ ++F PDP +F     FD   + 
Sbjct: 1   MAVVIHKSGFVWRQQYTHSKPSVLEK--GETTDRTGSAVSFWPDPDVFETV-DFDFQTIY 57

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           +  Q  A+L+  +      ++    + G   +  F + GG+  +++    +++ +   + 
Sbjct: 58  RRLQEMAFLNRGITIHLLDERVPEGEDGKTREVTFRYDGGIADFVRHLNASKNPMHKTVV 117

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
             + E++G    +VE A+ W E     + ++ N I T EGGTHE G R ALT  + +Y  
Sbjct: 118 EFEAEEEG---MSVEIAMQWNESYGESVYTFANNINTHEGGTHEEGFRSALTSVVNRYGT 174

Query: 348 LTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
             +  +    +  +D+      I+SV +  P+F GQTKTKL +   +  V+    D    
Sbjct: 175 DKKLLKGDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTPVKSFVQRVCNDRLVD 234

Query: 407 YLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTE 465
           +  +NP EA  +++            ++ ++   RK+ +    +PGKLADC       +E
Sbjct: 235 WFDRNPAEAKTIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESE 294

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
           +FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG    
Sbjct: 295 VFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGIH 354

Query: 526 SQYREE 531
             +  E
Sbjct: 355 DDFDME 360


>gi|118201778|gb|ABK79702.1| DNA gyrase subunit b [Nereida ignava]
          Length = 356

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 125/366 (34%), Positives = 189/366 (51%), Gaps = 14/366 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALSD L + V R  +    +F RG  +  LE+        GT + F    + F +   +
Sbjct: 1   NALSDWLELRVWRDGSEHIARFERGDTVKHLERVGPSEE-TGTEVRFLSSLETFSNL-DY 58

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  A+L+  V+     ++          K E ++ GG+K +++    ++S 
Sbjct: 59  SFETLEKRLRELAFLNSGVRIILVDER-----PAEALKSELFYDGGVKEFVKYLDRSKSS 113

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           +       K EK       VE A+ W +   E    + N I   +GGTH +G R ALTR 
Sbjct: 114 VMDTPIYVKGEKDDI---GVEVAMWWNDSYHENVLPFTNNIPQRDGGTHMAGFRSALTRT 170

Query: 342 IKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I+KYA+ T   +   ++   DD       +LSV + +P+F+ QTK KLVS + +  VE+ 
Sbjct: 171 IQKYAQDTGIAKREKVNFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVESL 230

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    +  +NP EA  ++  +IE +  R   RK RE   RKTA+    L GKL DCS+
Sbjct: 231 VGEKLLEWFGENPNEAKIVVGKIIEAAMAREAARKARELTRRKTAMDVNFLAGKLKDCSE 290

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TE+F+VEGDSAGGSA+  R+R  QA+LPL+GKILNV  A  +++  +Q+I +LV 
Sbjct: 291 KDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVM 350

Query: 519 ALGCRT 524
           ALG   
Sbjct: 351 ALGTGI 356


>gi|215271432|emb|CAR48205.1| gyrase B subunit [Vibrio parahaemolyticus]
 gi|215271434|emb|CAR48206.1| gyrase B subunit [Vibrio parahaemolyticus]
 gi|215271436|emb|CAR48207.1| gyrase B subunit [Vibrio parahaemolyticus]
          Length = 350

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 124/360 (34%), Positives = 195/360 (54%), Gaps = 14/360 (3%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LS+++ +T+ R   I +Q +  G P +PL       +K GT+I F P  + F +   F  
Sbjct: 1   LSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKTGTQIRFWPSAETFSNT-EFHY 58

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             L K  +  ++L+  V      ++E        +++ F + GG++ ++Q    N++ I 
Sbjct: 59  DILAKRLRELSFLNSGVSIKLIDEREAD------KQDHFMYEGGIQAFVQHLNTNKTPII 112

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
            +IF    E++     +VE A+ W +     I  + N I   +GGTH +G R ALTR + 
Sbjct: 113 EKIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRTLN 170

Query: 344 KYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE+A+ 
Sbjct: 171 SFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMG 230

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNI 460
           +    +LV+NP EA  +   +I+ +  R   RK R    RK A+    LPGKLADC +  
Sbjct: 231 EKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKD 290

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ AL
Sbjct: 291 PALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 350


>gi|106895929|gb|ABE96860.1| DNA gyrase subunit B [Aeromonas sp. MDC78]
          Length = 348

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 124/358 (34%), Positives = 193/358 (53%), Gaps = 16/358 (4%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K 
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEILAKR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F  
Sbjct: 59  LRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHF 111

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +  
Sbjct: 112 TTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKE 168

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +
Sbjct: 169 DYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADF 228

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
           L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL
Sbjct: 229 LLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSEL 288

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           +IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC  
Sbjct: 289 YIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGI 346


>gi|92919035|gb|ABE96864.1| DNA gyrase subunit B [Aeromonas sp. MDC364]
          Length = 347

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 124/358 (34%), Positives = 193/358 (53%), Gaps = 16/358 (4%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K 
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEILAKR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F  
Sbjct: 59  LRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHF 111

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +  
Sbjct: 112 TTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKE 168

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +
Sbjct: 169 DYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADF 228

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
           L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL
Sbjct: 229 LLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSEL 288

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           +IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC  
Sbjct: 289 YIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGI 346


>gi|261488458|emb|CAU94904.1| DNA gyrase subunit B [Pelomonas puraquae]
          Length = 344

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 102/323 (31%), Positives = 168/323 (52%), Gaps = 27/323 (8%)

Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178
           + H   P +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VN LS  L +TV +   
Sbjct: 1   DKHE--PKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNGLSKFLRLTVRQNGK 58

Query: 179 IFSQKFSRGIPLS------------PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAAR 226
           +   +F++GIP +            P++   +  +KRGT + F PD +IF +   +    
Sbjct: 59  VHFLEFAKGIPQNGESVMVDGVETRPMKVIGET-DKRGTEVHFLPDTEIFKENNDYHYDI 117

Query: 227 LLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSE 286
           L K  +  ++L+  VK     ++   E         F + GG+K +++   + ++ +   
Sbjct: 118 LAKRLRELSFLNNGVKIRLVDERSNKEDN-------FAYAGGVKGFVEFINKGKTTLHPN 170

Query: 287 IFTGKTEKKGTHR--GTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRGIK 343
           IF    EK         VE A+ W +  N  +  + N I   +GGTH +GLR A+TR I 
Sbjct: 171 IFHAVGEKVSEQGTTIGVEVAMQWNDGFNENVLCFTNNIPQRDGGTHLTGLRAAMTRVIN 230

Query: 344 KYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
           KY E  +   K  + +  DD+      ++SV + EP+F+ QTK KLVS + +  VE+ + 
Sbjct: 231 KYIEDNELAKKAKVEVAGDDMREGLACVVSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVS 290

Query: 402 DPFDHYLVQNPIEATKLLEWVIE 424
                YL++NP++A  +   +++
Sbjct: 291 RLLTDYLLENPLDAKTICGKILD 313


>gi|118201768|gb|ABK79697.1| DNA gyrase subunit b [Loktanella fryxellensis]
          Length = 357

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 122/366 (33%), Positives = 187/366 (51%), Gaps = 13/366 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALSD L + + R       +F  G  +  L        ++GT +TF      F ++  F
Sbjct: 1   NALSDFLELRIWRNGKEHFARFEGGNTVESLRVVGDANGRKGTEVTFLASLATFSNR-DF 59

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L K  +  A+L+  V+      +          K E ++ GG+K +++    +++ 
Sbjct: 60  DYHILEKRLRELAFLNSGVRIILEDLR-----PAEALKTELFYEGGVKEFVKYLDRSKAS 114

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           I  E    + E+       VE A+ W +   E+   + N I   +GGTH +G R ALTR 
Sbjct: 115 ILPEPIYVRGERDDI---GVEVAMWWNDSYNEMVLPFTNNIPQRDGGTHMAGFRAALTRT 171

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  YA+ +    K  +S   DD       +LSV + +P+F+ QTK KLVS + +  VEN 
Sbjct: 172 INNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENL 231

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    +  +NP  A  ++  ++E +  R   RK R+   RKTA+    L GKL DCS+
Sbjct: 232 VGEKLAEWFEENPQIAKVVVGKIVEAALAREAARKARDLTRRKTAMDVNFLAGKLKDCSE 291

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TE+F+VEGDSAGGSA+  R+R  QA+LPL+GKILNV  A  +++  +Q+I +LV 
Sbjct: 292 KDPSKTEVFLVEGDSAGGSAQTGRDRGTQAILPLKGKILNVERARFDRMLGSQEIGNLVM 351

Query: 519 ALGCRT 524
           ALG   
Sbjct: 352 ALGTGI 357


>gi|195926954|dbj|BAG68364.1| gyrase B [Campylobacter jejuni]
          Length = 339

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 127/353 (35%), Positives = 183/353 (51%), Gaps = 18/353 (5%)

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L  TV R   I+ Q+FS G  +S      K +   GT I F PD +IF    
Sbjct: 1   VVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSKK-TGTTIEFWPDDQIFEVT- 58

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   L K  +  AYL+ ++   +  ++       + + E F+F GG+  ++    +  
Sbjct: 59  EFDYEILAKRFRELAYLNPKITINFKDNR-------VGKHESFHFEGGISQFVTDLNKKE 111

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALT 339
           +L  +  F+   E        VE A+ + +   E   S+ N I T +GGTHE+G R+ LT
Sbjct: 112 ALTKAIFFSVDEED-----VNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLT 166

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y E      ++   I  +D+    + ++SV + EP+F GQTK KL S   +  V 
Sbjct: 167 RVISNYIEANASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVS 226

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
            A  +    Y  +NPIEA  ++   +  +  R   +K RE   +K ++    LPGKLADC
Sbjct: 227 KASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADC 286

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
                  +E+++VEGDSAGGSAKQ R RS QA+LPLRGKILNV  A  +KI  
Sbjct: 287 QSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILK 339


>gi|285026263|dbj|BAI67860.1| DNA gyrase B [Rubritalea tangerina]
          Length = 360

 Score =  171 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 115/364 (31%), Positives = 183/364 (50%), Gaps = 18/364 (4%)

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDA 224
           SD     V R   +    F RG  ++PLE   +   +K GT++TF PD  IF D   F+ 
Sbjct: 1   SDWFKAEVTRDGKVHQITFERGKTVNPLEVVGEAPSDKTGTKVTFYPDATIFVDTIVFEF 60

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
            RL    +   +L+  +      ++  +EK      E FY+  G++ ++    EN++ + 
Sbjct: 61  ERLATRLRELTFLNPGLTIILEDERPESEKK-----ETFYYAKGIEEFVVQLGENKTTVH 115

Query: 285 SEIFTGKTEKKGTHRGT---------VEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
            E      +++                +    + +   +    Y N+I   +GGTH +G 
Sbjct: 116 EEPVVLTGKRQVEIDYDGKVMEDDVFADVVFQYNDSYQDNILCYANSIPNADGGTHLTGF 175

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR I +YA+  +    +  S+  DD+    + ++SV +  P F+ QTK KLV+ + 
Sbjct: 176 RGALTRSINQYAKANKILKDKDPSLSGDDVREGIICVISVKMPNPRFSSQTKDKLVNAEI 235

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
           +  V + + +    Y  +NP  A ++++  +  +  R   RK RE  RK+ +    LPGK
Sbjct: 236 EGVVSSIVYEGLQAYFDENPNLAKQIIDKAVNAARAREAARKARETVRKSVMSGGGLPGK 295

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS+     +EL+IVEGDSAGGSAK  RNR NQA+LPLRGK++NV  A   K   N++
Sbjct: 296 LADCSERDPAKSELYIVEGDSAGGSAKSGRNRINQAILPLRGKVINVEKARLHKALQNKE 355

Query: 513 IMDL 516
           I  +
Sbjct: 356 IQAM 359


>gi|156946272|gb|ABU98324.1| DNA gyrase subunit beta [Alcanivorax dieselolei]
          Length = 352

 Score =  171 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 122/363 (33%), Positives = 189/363 (52%), Gaps = 16/363 (4%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS+ L +T+ R   +  Q +  G+P  PL+         GT I FRP P  F +   F 
Sbjct: 1   ALSETLKLTIRRHGKVHEQVYHDGVPEKPLDVVG-TTESSGTTIRFRPSPATFNNI-QFH 58

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L K  +  ++L+  V+     ++   E       + F + GGL  ++    +N+S +
Sbjct: 59  YDILAKRLRELSFLNSGVRIHLLDERSGDE-------DVFEYEGGLSAFVTYLNQNKSSL 111

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
           +         + G     VE A+ W +     I  Y N I   +GGTH +G R ALTR +
Sbjct: 112 NQVFHFQVDREDGI---GVEVAMQWNDSYQENIYCYTNNIPQRDGGTHLAGFRAALTRTL 168

Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             Y E      +   +   DD       ++SV + +P+F+ QTK KLVS + +  VE  +
Sbjct: 169 NTYMEKEGFLKREKANPSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTM 228

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQN 459
            + F  +L+++P+E+  +++ +I+ +  R   RK      RK A+    LPGKLADC + 
Sbjct: 229 TERFQDFLLEHPVESKNIVQKIIDAARARDAARKAREMTRRKGALDIAGLPGKLADCQEK 288

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
               +EL+IVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++Q++  L+ A
Sbjct: 289 DPALSELYIVEGDSAGGSAKQGRDRKYQAILPLKGKILNVEKARFDKMLSSQEVATLITA 348

Query: 520 LGC 522
           LGC
Sbjct: 349 LGC 351


>gi|325515583|gb|ADZ24408.1| DNA gyrase subunit B [Thiothrix sp. AS]
          Length = 363

 Score =  171 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 130/374 (34%), Positives = 191/374 (51%), Gaps = 15/374 (4%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L +T+ R   ++ Q +  G P++PL          GT + F P  +IF     F
Sbjct: 1   NALSANLELTIRRNGKLYQQMYKLGDPVAPLAIIGDTEG-TGTSVRFWPSAEIFALT-EF 58

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  ++L+  V+      +          ++ F + GG+K ++     N++ 
Sbjct: 59  HYDILAKRLRELSFLNSGVRIHLLDRRG------EGREDVFEYEGGIKAFVAHLNRNKAP 112

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           I + I    TE+       VE A+ W +     I  Y N I   +GG+H SG R ALTR 
Sbjct: 113 IHNNIIYFTTERDDV---GVEVALQWNDSYQENIFCYTNNIPQRDGGSHLSGFRAALTRT 169

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +  Y E      K  IS   DD       +LSV + +P+F+ QTK KLVS + +  VE A
Sbjct: 170 LNSYIESAGLAKKEKISPTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKGIVEAA 229

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458
           + +    +L+++P EA  +   +IE +  R   RK R    RK A+    LPGKLADC +
Sbjct: 230 MNERLGEFLLESPGEAKLIAGKMIEAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 289

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +ELF+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++Q++  L+ 
Sbjct: 290 KDPALSELFLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVERARFDKMISSQEVGTLII 349

Query: 519 ALGCRTRSQYREED 532
           ALGC    +    D
Sbjct: 350 ALGCGIGREEYNID 363


>gi|19909741|dbj|BAB87066.1| DNA gyrase subunit B [bacterium p6r]
          Length = 271

 Score =  171 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 89/278 (32%), Positives = 136/278 (48%), Gaps = 31/278 (11%)

Query: 99  VSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
           V++  +G L+V+DNGRGIP          P +S  EI LT LHAGGKF+ ++Y++SGGLH
Sbjct: 1   VTIHADGSLSVIDNGRGIPTGVKMDDKHEPKRSAAEIALTELHAGGKFNQNSYKVSGGLH 60

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKVRNKR 203
           GVG+S VNALS  L +TV+R    +   FSRG              +SP+    +  +KR
Sbjct: 61  GVGVSCVNALSVWLKLTVSRDGQRYEIDFSRGQVQNRLIEVVEGAEVSPMRVVGE-SDKR 119

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT++ F PD +IF +   F    L K  +  ++L+  V+     +++  E         F
Sbjct: 120 GTKVHFLPDQEIFKENFDFRYEILAKRLRELSFLNNGVRIRLKDERDGKEDD-------F 172

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT-------HRGTVEWAIAWCEENPEI- 315
              GG+K +++     + ++    F     +              VE ++ W +   E  
Sbjct: 173 SGAGGVKGFVEFINGTKKVLHPTAFHAMGSRPAETYGGIPGTEIGVEISMQWNDSYGEQV 232

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR 353
             + N I   +GGTH +GLR A+TR I KY E     +
Sbjct: 233 LCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIESNDLAK 270


>gi|261488462|emb|CAU94906.1| DNA gyrase subunit B [Mitsuaria chitosanitabida]
          Length = 337

 Score =  171 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 102/322 (31%), Positives = 167/322 (51%), Gaps = 27/322 (8%)

Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178
           + H   P +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS  L +TV R+  
Sbjct: 1   DKHE--PKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKTLRLTVRREGK 58

Query: 179 IFSQKFSRGIP------------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAAR 226
           +   +F +GIP            +SP++      +KRGT + F PD +IF   + F    
Sbjct: 59  VHQIEFKKGIPQDRLIEVRDGFEISPMKIVGDT-DKRGTEVHFLPDTEIFTSNSEFHYDI 117

Query: 227 LLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSE 286
           L K  +  ++L+  VK     ++   E         F F GG++ + +   + ++ ++  
Sbjct: 118 LAKRLRELSFLNNGVKIRLVDERNNKEDN-------FSFSGGVRGFFEFINKGKTALNPN 170

Query: 287 IFTGKTEK--KGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRGIK 343
           IF  + +K          E ++ W +  N  +  + N I   +GGTH +GLR A+TR I 
Sbjct: 171 IFYAQGDKLSDQNTNVGXEVSMQWNDGFNESVLCFTNNIPQRDGGTHLTGLRAAMTRVIN 230

Query: 344 KYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
           KY E  +   K  + +  DD+      ++SV + EP+F+ QTK KLVS + +  VE  + 
Sbjct: 231 KYIEDNELAKKAKVDVTGDDMREGLACVISVKVPEPKFSSQTKDKLVSSEVRGPVEEIVA 290

Query: 402 DPFDHYLVQNPIEATKLLEWVI 423
                +L++NP++A  +   ++
Sbjct: 291 SKLTDWLLENPVDAKIICGKIV 312


>gi|118201772|gb|ABK79699.1| DNA gyrase subunit b [Loktanella salsilacus]
          Length = 357

 Score =  171 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 117/366 (31%), Positives = 186/366 (50%), Gaps = 13/366 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALSD L + + R       +F  G     L        ++GT + F    + F ++  +
Sbjct: 1   NALSDYLELRIWRNGKEHYARFEGGYTTESLRVVGDANGRKGTEVRFLASLETFSNR-DY 59

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L K  +  A+L+  V+     ++        P + E ++ GG+K +++    ++S 
Sbjct: 60  DFHTLEKRLRELAFLNSGVRIILEDER-----PAEPLRTELFYEGGVKEFVKYLDRSKSS 114

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           I  E    + E+       +E A+ W +   E+   + N I   +GG+H +G R ALTR 
Sbjct: 115 ILPEPIYVRGERDDI---GIEVAMWWNDSYNEMVLPFTNNIPQRDGGSHMAGFRAALTRT 171

Query: 342 IKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  YA+ +   +        DD       +LSV + +P+F+ QTK KLVS + +  VEN 
Sbjct: 172 INNYAQSSGIAKREKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENL 231

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    +  +NP  A  ++  ++E +  R   RK R+   RKTA+    L GKL DCS+
Sbjct: 232 VGEKLAEWFEENPSIAKVVVGKIVEAALAREAARKARDLTRRKTAMDVNFLAGKLKDCSE 291

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TE+F+VEGDSAGGSA+  R+R  QA+LPL+GKILNV  A  +++  +Q+I +LV 
Sbjct: 292 KDPSKTEVFLVEGDSAGGSAQTGRDRGTQAILPLKGKILNVERARFDRMLGSQEIGNLVM 351

Query: 519 ALGCRT 524
           ALG   
Sbjct: 352 ALGTGI 357


>gi|302122538|gb|ADK92938.1| DNA gyrase subunit B [Geobacillus sp. C12]
          Length = 327

 Score =  171 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 117/337 (34%), Positives = 180/337 (53%), Gaps = 14/337 (4%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           F    Y++SGGLHGVG SVVNALS+ L V V R   I  Q++ RG P + L+   +  ++
Sbjct: 1   FGGGGYKVSGGLHGVGASVVNALSEWLEVYVYRDGKIHYQRYERGEPCTDLQVIGET-DR 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT   F+PDP+IF +   FD   L    +  A+L+  +K   + ++    K       E
Sbjct: 60  TGTTTRFKPDPEIFTETTEFDYETLATRLRELAFLNRGLKITLTDERVDNRKN------E 113

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           + + GG+++Y++     R ++  E      E+ G     VE A+ + +     I S+ N 
Sbjct: 114 YVYEGGIRSYVRHLNRTREVLHEEPIYIAGERDGI---AVEIALQYNDGYTSNIYSFVNN 170

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I T EGGTHESG ++ALTR I  YA   Q   +   ++  DD+      I+S+    P+F
Sbjct: 171 IHTHEGGTHESGFKMALTRIINDYARKQQIFKENDANLTGDDVREGLTAIVSIKHPSPQF 230

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREV 438
            GQTKTKL + DA+   +    + F+ +L++NP  A K++E  ++        ++ +   
Sbjct: 231 EGQTKTKLGNSDARTVTDAVFSEQFETFLLENPTIARKIVEKGMMAARARLAAKKARELT 290

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            RK+A+    LPGKLADCS      +EL++VEGDSAG
Sbjct: 291 RRKSALEISXLPGKLADCSSRDPSISELYVVEGDSAG 327


>gi|207678274|gb|ACI25151.1| DNA gyrase B [Phaeobacter sp. M5-4.1]
          Length = 349

 Score =  171 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 114/358 (31%), Positives = 181/358 (50%), Gaps = 13/358 (3%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L + + R       +F RG     L+   +  ++ GT + F      F +   +    L 
Sbjct: 1   LELRIWRDGKEHVARFERGDTAEHLKVVGECGDQTGTEVRFLASTDTFSNL-EYSFETLE 59

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           K  +  A+L+  V+     ++          + E ++ GG+K +++    ++S +     
Sbjct: 60  KRLRELAFLNSGVRIILIDER-----PAERLEVELFYEGGVKEFVKYLDRSKSPVMEAPI 114

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
               +K       VE A+ W +     +  + N I   +GGTH +G R ALTR I  YA+
Sbjct: 115 YITGDKDDI---GVEVAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRTINNYAQ 171

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
            +    K  +S   DD       +LSV + +P+F+ QTK KLVS + +  VE+ + +   
Sbjct: 172 SSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVNEKLA 231

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +  +NP +A +++  +IE +  R   RK RE   RKTA+    L GKL DCS+     T
Sbjct: 232 EWFEENPNQAKQIVGKIIEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSEKDPSKT 291

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           E+F+VEGDSAGGSA+  R+R  QA+LPLRGKILNV  A  +++  +Q+I +LV ALG 
Sbjct: 292 EVFLVEGDSAGGSAQTGRDRMTQAILPLRGKILNVERARFDRMLGSQEIGNLVMALGT 349


>gi|285026265|dbj|BAI67861.1| DNA gyrase B [Rubritalea sp. YM29-130]
          Length = 360

 Score =  171 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 115/364 (31%), Positives = 183/364 (50%), Gaps = 18/364 (4%)

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDA 224
           SD     V R   +    F RG  ++PLE   +   +K GT++TF PD  IF D   F+ 
Sbjct: 1   SDWFKAEVTRDGKVHQITFERGKTVNPLEVVGEAPSDKTGTKVTFYPDATIFVDTIIFEF 60

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
            RL    +   +L+  +      ++  +EK      E FY+  G++ ++    EN++ + 
Sbjct: 61  DRLATRLRELTFLNPGLTIVLEDERPESEKK-----ETFYYAKGIEEFVVQLGENKTTVH 115

Query: 285 SEIFTGKTEKKGTHRGT---------VEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
            E      +++                +    + +   +    Y N+I   +GGTH +G 
Sbjct: 116 EEPVVLTGKRQVEIDYDGKVMEDDVFADVVFQYNDSYQDNILCYANSIPNADGGTHLTGF 175

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR I +YA+  +    +  S+  DD+    + ++SV +  P F+ QTK KLV+ + 
Sbjct: 176 RGALTRSINQYAKANKILKDKDPSLSGDDVREGIICVISVKMPNPRFSSQTKDKLVNAEI 235

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
           +  V + + +    Y  +NP  A ++++  +  +  R   RK RE  RK+ +    LPGK
Sbjct: 236 EGVVSSIVYEGLQAYFDENPNLAKQIIDKAVNAARAREAARKARETVRKSVMSGGGLPGK 295

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS+     +EL+IVEGDSAGGSAK  RNR NQA+LPLRGK++NV  A   K   N++
Sbjct: 296 LADCSERDPAKSELYIVEGDSAGGSAKSGRNRINQAILPLRGKVINVEKARLHKALQNKE 355

Query: 513 IMDL 516
           I  +
Sbjct: 356 IQAM 359


>gi|89143206|emb|CAJ57500.1| DNA gyrase subunit B [Microbacterium phyllosphaerae]
          Length = 358

 Score =  171 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 109/357 (30%), Positives = 177/357 (49%), Gaps = 13/357 (3%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V V ++  ++   F+ G       +K +  ++ GT ITF PD +IF +   FD   L   
Sbjct: 1   VEVKQKGFVWRHSFANGGVPQQKLEKGEASDETGTAITFWPDAEIFAETTDFDYDTLRTR 60

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPE--------KEEFYFPGGLKTYLQTKLENRSL 282
            Q  A+L+  ++   S ++  +      +         + F++  GL  Y++   + R  
Sbjct: 61  FQQMAFLNKGLRIELSDERPASAYEVEVDGQATLTQPNDVFFYERGLVDYVEYLNKVRHA 120

Query: 283 ISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
                     E +    + ++E A+ W       + +Y NTI T EGGTHE G R ALT 
Sbjct: 121 EVVNDEIIAFESEDTERKISLEVAMQWTTSYTENVFTYANTINTHEGGTHEEGFRAALTT 180

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            + KYA       ++  ++  DD+      ++S+ + EP+F GQTKTKL + +A+  V+ 
Sbjct: 181 LVNKYARANNLLKEKDDNLSGDDVREGLTAVISIKLGEPQFEGQTKTKLGNTEAKAFVQK 240

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCS 457
            + D    +  +NP +A  ++   I+ +  RL  RK RE  R+ +      +P KL DC+
Sbjct: 241 VVGDQLGDWFGRNPNQAKNVIRKAIDAATARLAARKARETARRKSVFESAAMPDKLKDCT 300

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
                 +E+F+VEGDSAGGSA Q R+   QA+L LRGKILNV  A  +K   N+++ 
Sbjct: 301 SKDPSISEIFLVEGDSAGGSAVQGRDPHTQAILALRGKILNVERARLDKALGNKEVQ 357


>gi|189164046|gb|ACD77133.1| FusA [Geobacter sp. M18]
          Length = 245

 Score =  171 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 108/245 (44%), Positives = 153/245 (62%), Gaps = 4/245 (1%)

Query: 335 RVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           + +LTR +  YA      + +   I  +DL      ++SV I +P+F GQTKTKL + + 
Sbjct: 1   KASLTRTMNNYATANNLLKNVKVAISGEDLREGLTAVISVKISQPQFEGQTKTKLGNSEV 60

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
           +  VE  + +    YL +NP  A K+LE  I+ +  R   RK RE   RK A+    LPG
Sbjct: 61  KGYVETLMNEKLATYLEENPAMARKILEKSIDAARAREAARKARELTRRKGALEVGTLPG 120

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KLADC +      ELF+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+  +Q
Sbjct: 121 KLADCQEKDPALCELFLVEGDSAGGSAKQGRDRKYQAILPLKGKILNVEKARFDKMLASQ 180

Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570
           +I  L+ ALG    +  +    LRY ++IIMTDADVDG+HI +LLLTFF+++M ++IE+ 
Sbjct: 181 EIRTLISALGTSIGKEDFDIAKLRYHRIIIMTDADVDGSHILTLLLTFFFRQMMEMIERG 240

Query: 571 HLFLI 575
           +L++ 
Sbjct: 241 YLYIA 245


>gi|215271023|emb|CAR48190.1| gyrase B subunit [Vibrio campbellii]
 gi|215271223|emb|CAR48191.1| gyrase B subunit [Vibrio campbellii]
 gi|215271410|emb|CAR48194.1| gyrase B subunit [Vibrio campbellii]
          Length = 350

 Score =  171 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 122/360 (33%), Positives = 193/360 (53%), Gaps = 14/360 (3%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LS+++ +T+ R   I +Q +  G P +PL       ++ GT+I F P  + F +   F  
Sbjct: 1   LSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETFTNI-EFHY 58

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             L K  +  ++L+  V      ++E        + + F F GG++ +++    N++ I 
Sbjct: 59  DILAKRLRELSFLNSGVSIKLVDEREAD------KSDHFMFEGGIQAFVEHLNTNKTPII 112

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
            +IF    E++      VE A+ W +     I  + N I   +GGTH +G R ALTR + 
Sbjct: 113 EKIFHFDFERED--GIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLN 170

Query: 344 KYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE+A+ 
Sbjct: 171 TFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMG 230

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNI 460
           +    +L++NP EA  +   +I+ +  R   RK R    RK A+    LPGKLADC +  
Sbjct: 231 EKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKD 290

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ AL
Sbjct: 291 PALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 350


>gi|119369972|gb|ABL68000.1| DNA gyrase subunit B [uncultured bacterium]
          Length = 437

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 142/444 (31%), Positives = 209/444 (47%), Gaps = 26/444 (5%)

Query: 131 EIILTTLHAGGKFDN----STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ---- 182
           E+I+T LHAGGKFD     S Y  SGGLHGVG++V NALS  + V +     +  Q    
Sbjct: 1   EVIMTVLHAGGKFDKTAGESAYRFSGGLHGVGVAVTNALSQRVEVEIQHHAILREQGMVA 60

Query: 183 ---KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
               F++G      + + K   +      FR       D A  +   L  + ++KA L  
Sbjct: 61  IALAFTQGDGQRAADPRWKTAARAPMARGFRYGRTGSIDSAKINVRELTHLLRAKAILLP 120

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
           R  +     +      G    E     GG+    +                  +  G  +
Sbjct: 121 RSAS-----EPHPPGAGTRRLEVQRRSGGIPRGNRRLSRTGHADFFGDLLSDGDTNGFAK 175

Query: 300 GT-VEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAIS 356
           G    WA+ W     P   +Y N I T  GGTHESG R  +   ++ + E        + 
Sbjct: 176 GEGAAWALCWSGNVMPNPETYVNLIPTSNGGTHESGFRAGVFEAVRSFMEHHSLVPAKLK 235

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
           ++ DD+      +LS  + +P+F GQTK KL S DA + +   +RDP + +L  +P    
Sbjct: 236 LVQDDVTGKMALVLSARVLDPQFQGQTKDKLTSRDAHKLMAQTMRDPLELWLNSHPGAGK 295

Query: 417 KLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
            + E        R R  ++ E  + + +  L  PGKL DC        ELF+V+GDSAGG
Sbjct: 296 AVAELATRSPRARTRAAQKNERKKGSGLATL--PGKLTDCESEDIQRNELFLVDGDSAGG 353

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED---- 532
           SAK AR++  QA+LPLRGK+LN     +++I  NQ++ ++  ALG    +   + D    
Sbjct: 354 SAKAARDKEYQALLPLRGKVLNTWEVDADQIFKNQEVHNMAVALGIEAHNFQADPDRVLA 413

Query: 533 -LRYEKVIIMTDADVDGAHIASLL 555
            LRY K +I+TDADVDG+HI +LL
Sbjct: 414 GLRYGKTMILTDADVDGSHIRTLL 437


>gi|318066835|emb|CBY89129.1| DNA gyrase subunit B [Halomonas cupida]
          Length = 349

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 124/360 (34%), Positives = 187/360 (51%), Gaps = 16/360 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +T+ R   +  Q +  G+P +PL    +     G+R+ FRP P+ F +
Sbjct: 1   VSVVNALSEELKLTIWRAGQVHEQIYRHGVPQAPLGVVGQTEK-TGSRVHFRPSPETFAN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F++ GGLK ++     
Sbjct: 60  I-EFHFDILAKRLRELSFLNSGVAIRLLDERSGKE-------ELFHYEGGLKAFVDHLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N+++++         + G     VE A+ W +     I  Y N I   +GGTH +G R A
Sbjct: 112 NKTVLNPVFHFNAEREDGV---AVEVAMQWNDTFAENIFCYTNNIPQRDGGTHLAGFRAA 168

Query: 338 LTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E     +        DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRTLNHYIEAEGLLKKAKVATSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  L   F  YLV+ P EA  ++  +++ +  R   RK      RK A+    LPGKLA
Sbjct: 229 VEQELGRLFSEYLVEKPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLA 288

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 289 DCQEKDPSLSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 348


>gi|124300763|dbj|BAF45879.1| gyrase B [Pectobacterium carotovorum subsp. carotovorum]
          Length = 334

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 111/344 (32%), Positives = 180/344 (52%), Gaps = 14/344 (4%)

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
            R   +  Q +  G+  +PL    +  N+ GT + F P  + F +   F+   L K  + 
Sbjct: 1   HRDGKLHEQTYKHGVAQAPLAVTGET-NRTGTTVRFWPSHETFTNVVEFEYEILAKRLRE 59

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            ++L+  V      ++E        + + +++ GG+K ++     N++ I   +F   T 
Sbjct: 60  LSFLNSGVSIRLIDEREKD------KADHYHYDGGIKAFVDYLNRNKTPIHPNVFYFSTV 113

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350
           K       VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +     
Sbjct: 114 KDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNTYMDKEGYS 170

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE+ + +    YL++
Sbjct: 171 KKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVESLMNEKLVDYLME 230

Query: 411 NPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           NP +A  ++  +I+ +  R   RK      RK A+    LPGKLADC +     +EL++V
Sbjct: 231 NPSDAKIVVGKIIDAARAREAARKARDMTRRKGALDLAGLPGKLADCQERDPALSELYLV 290

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           EGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 291 EGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 334


>gi|312076268|ref|XP_003140785.1| hypothetical protein LOAG_05201 [Loa loa]
 gi|307764049|gb|EFO23283.1| hypothetical protein LOAG_05201 [Loa loa]
          Length = 729

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 75/173 (43%), Gaps = 11/173 (6%)

Query: 508 RNNQQIMDLVQALGCRTRSQYR----EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
             N ++  L++ +G + R +Y      + LRY K+++M D D DG+HI  L++ F +   
Sbjct: 1   MENAEVNALLKIIGLQYRLKYDKDEDMKTLRYGKIMVMADQDQDGSHIKGLVINFIHYNW 60

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
             L+ +  +     P+ + T+G + +        ++ L            I  +KGLG  
Sbjct: 61  PALVRRNFVEEFITPIVKATKGKEEISFFSLPEYKEWLN--NTENWKTYRIKYYKGLGTS 118

Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
            + + KE  MD  +   ++   + +    +    + +K    K +ER  ++  
Sbjct: 119 TSKEAKEYFMDMRRHR-IQFRYSGE-EDDQALDMAFSK---KKIEERKIWLTN 166


>gi|308197531|gb|ADO17803.1| GyrB [Vibrio brasiliensis LMG 20546]
          Length = 285

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 95/295 (32%), Positives = 156/295 (52%), Gaps = 13/295 (4%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL    
Sbjct: 1   HAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVTLTIHRGGHIHTQTYHHGEPQAPLAVIG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
              +K GT+I F P  + F +   F    L K  +  ++L+  V      ++E       
Sbjct: 61  DT-DKTGTQIRFWPSAETFSN-TEFHYDILAKRLRELSFLNSGVSIKLIDERE------E 112

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
            + + F F GG++ ++     N++ I  +IF    E++      VE A+ W +     I 
Sbjct: 113 DKSDHFMFEGGIQAFVDHLNTNKTPIIEKIFHFDFERED--GIAVEVAMQWNDGFQENIY 170

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
            + N I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV +
Sbjct: 171 CFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKV 230

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
            +P+F+ QTK KLVS + +  VE+A+ +    +LV+NP EA  +   +I+ +  R
Sbjct: 231 PDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLVENPTEAKMVCSKIIDAARAR 285


>gi|118201782|gb|ABK79704.1| DNA gyrase subunit b [Oceanicola batsensis]
          Length = 357

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 123/366 (33%), Positives = 193/366 (52%), Gaps = 13/366 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALSD L + + R       +F   + + PL+       ++GT + F    + F +   +
Sbjct: 1   NALSDWLELRIWRDGKEHYVRFEDSVTVEPLKVVGDADGEKGTEVRFLSSTQTFSNLN-Y 59

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D A L K  +  A+L+  V+     ++        P + E ++ GG+K +++    ++  
Sbjct: 60  DYATLEKRLRELAFLNSGVRIVLEDER-----PAEPLRTELFYEGGVKEFVKYLDRSKQA 114

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           + SE    + E+ G     VE A+ W +     +  + N I   +GGTH +G R ALTR 
Sbjct: 115 MMSEPIHVEGERDGI---GVEVAMWWNDSYHETVLPFTNNIPQRDGGTHMAGFRGALTRT 171

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + +YA  +    +  +S   DD       +LSV + +P+F+ QTK KLVS + +  VEN 
Sbjct: 172 LTRYATESGVAKREKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENL 231

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    +  +NP EA  ++  ++E +  R   RK RE   RKTA+    L GKL DCS+
Sbjct: 232 VGEKLAEWFEENPNEAKMIVGKIVEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSE 291

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                TE+F+VEGDSAGGSA+  R+R  QAVLPLRGKILNV  A  +++ ++Q+I +LV 
Sbjct: 292 KDPSKTEVFLVEGDSAGGSAQTGRDRGTQAVLPLRGKILNVERARFDRMLSSQEIGNLVM 351

Query: 519 ALGCRT 524
           ALG   
Sbjct: 352 ALGTGI 357


>gi|153869399|gb|ABS53030.1| DNA gyrase subunit B [secondary endosymbiont of Glycaspis
           brimblecombei]
 gi|153869401|gb|ABS53031.1| DNA gyrase subunit B [secondary endosymbiont of Glycaspis
           brimblecombei]
 gi|153869403|gb|ABS53032.1| DNA gyrase subunit B [secondary endosymbiont of Glycaspis
           brimblecombei]
 gi|153869405|gb|ABS53033.1| DNA gyrase subunit B [secondary endosymbiont of Glycaspis
           brimblecombei]
 gi|153869407|gb|ABS53034.1| DNA gyrase subunit B [secondary endosymbiont of Glycaspis
           brimblecombei]
 gi|153869409|gb|ABS53035.1| DNA gyrase subunit B [secondary endosymbiont of Glycaspis
           brimblecombei]
 gi|153869411|gb|ABS53036.1| DNA gyrase subunit B [secondary endosymbiont of Glycaspis
           brimblecombei]
 gi|153869413|gb|ABS53037.1| DNA gyrase subunit B [secondary endosymbiont of Glycaspis
           brimblecombei]
 gi|153869415|gb|ABS53038.1| DNA gyrase subunit B [secondary endosymbiont of Glycaspis
           brimblecombei]
 gi|153869417|gb|ABS53039.1| DNA gyrase subunit B [secondary endosymbiont of Glycaspis
           brimblecombei]
          Length = 311

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 101/322 (31%), Positives = 160/322 (49%), Gaps = 15/322 (4%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS++L + + R   ++ Q +  G+P + L          GT + 
Sbjct: 1   KVSGGLHGVGVSVVNALSEKLELMIKRDGKVYQQTYYHGVPQASLAVVGAT-EHTGTTVQ 59

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F P    F +   F    L K  +  ++L+  V       +   E       + F++ GG
Sbjct: 60  FWPSWATFTNNTVFQYEILAKRLRELSFLNSAVSIRLQDKRNNKE-------DYFHYKGG 112

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           +K ++    +N++ I   +F   TEK       VE A+ W       I  + N I    G
Sbjct: 113 IKAFVAYLNKNKTPIHPHVFYFSTEKDSI---GVEIALQWNNGFQESIYCFTNNIPQSTG 169

Query: 328 GTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH SG R A+TR +  Y +      K  ++   DD     + ++SV + +P+F+ QTK 
Sbjct: 170 GTHLSGFRAAITRTMNAYIDKEGYGKKAKVNPTGDDTREGLIAVVSVKVPDPKFSSQTKD 229

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAI 444
           KLVS + +  VE+ + +    YL++NP +A  ++  +IE +  R   RK RE+  RK A+
Sbjct: 230 KLVSSEVKSVVESLINERLVAYLLENPHDAKIVVAKIIEATRVREAARKAREMTRRKGAL 289

Query: 445 RKLRLPGKLADCSQNIAHGTEL 466
               LPGKLADC +     +EL
Sbjct: 290 ELASLPGKLADCRERNPVLSEL 311


>gi|261488460|emb|CAU94905.1| DNA gyrase subunit B [Pelomonas puraquae]
          Length = 340

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 102/323 (31%), Positives = 168/323 (52%), Gaps = 27/323 (8%)

Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178
           + H   P +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VN LS  L +TV +   
Sbjct: 1   DKHE--PKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNGLSKFLRLTVRQNGK 58

Query: 179 IFSQKFSRGIPLS------------PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAAR 226
           +   +F++GIP +            P++   +  +KRGT + F PD +IF +   +    
Sbjct: 59  VHFLEFAKGIPQNGESVMVDGVETRPMKVIGET-DKRGTEVHFLPDTEIFKENNDYHYDI 117

Query: 227 LLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSE 286
           L K  +  ++L+  VK     ++   E         F + GG+K +++   + ++ +   
Sbjct: 118 LAKRLRELSFLNNGVKIRLVDERSNKEDN-------FAYAGGVKGFVEFINKGKTTLHPN 170

Query: 287 IFTGKTEKKGTHR--GTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRGIK 343
           IF    EK         VE A+ W +  N  +  + N I   +GGTH +GLR A+TR I 
Sbjct: 171 IFHAVGEKVSEQGTTIGVEVAMQWNDGFNENVLCFTNNIPQRDGGTHLTGLRAAMTRVIN 230

Query: 344 KYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
           KY E  +   K  + +  DD+      ++SV + EP+F+ QTK KLVS + +  VE+ + 
Sbjct: 231 KYIEDNELAKKAKVEVAGDDMREGLACVVSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVS 290

Query: 402 DPFDHYLVQNPIEATKLLEWVIE 424
                YL++NP++A  +   +++
Sbjct: 291 RLLTDYLLENPLDAKTICGKILD 313


>gi|89143216|emb|CAJ57505.1| DNA gyrase subunit B [Microbacterium testaceum]
          Length = 362

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 114/362 (31%), Positives = 175/362 (48%), Gaps = 14/362 (3%)

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
            RQ  ++ Q F  G        K++  +  GT ITF PD  IF     FD   L    Q 
Sbjct: 1   RRQGHVWRQSFRDGGVPLAPLSKDEESDATGTTITFWPDATIFDTI-DFDYDTLRTRFQQ 59

Query: 234 KAYLSGRVKTCWSCDK--------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
            A+L+  ++     ++        E   +      + F +  GL  Y++     R     
Sbjct: 60  MAFLNKGLRIGLRDERAQSVVTEGEPGAEVTEARHDTFLYERGLVDYVEHLNRVRKADVV 119

Query: 286 EIFTGKTEKKGTHR-GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
                + E + T R   +E A+ W       + +Y NTI T EGGTHE G R ALT  + 
Sbjct: 120 NDEIIEVESEDTDRKIALELAMQWTTAYTENVFTYANTINTHEGGTHEEGFRAALTTLVN 179

Query: 344 KYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
           +YA       ++  ++  DD+      ++SV + EP+F GQTKTKL + +A+  V+  + 
Sbjct: 180 RYARANNLLKEKDDNLTGDDIREGLTAVISVKLSEPQFEGQTKTKLGNTEARAYVQKVVG 239

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNI 460
           D    +  +NP +A  ++   I+ +  RL  RK RE  R+ +      +P KL DC+   
Sbjct: 240 DKLGDWFDRNPGQAKNIIRKAIDAATARLAARKARETARRKSVFESAAMPDKLKDCTSKD 299

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +E+F+VEGDSAGGSA Q R+   QA+L LRGKILNV  A  ++   N+++  ++QA 
Sbjct: 300 PSISEIFLVEGDSAGGSAVQGRDPHTQAILALRGKILNVERARLDRALGNKEVQAMIQAF 359

Query: 521 GC 522
           G 
Sbjct: 360 GT 361


>gi|170178310|gb|ACB10202.1| DNA gyrase subunit B [Kribbella karoonensis]
          Length = 370

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 125/371 (33%), Positives = 192/371 (51%), Gaps = 8/371 (2%)

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKE 261
            GT ITF   P +F     +    L    +  A+L+  ++     ++ +  ++ G P ++
Sbjct: 2   NGTTITFWASPDVFETTT-YSYETLATRFREYAFLNKGLELVIRDERPDHLDEDGKPLEQ 60

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F +  GL  Y++     R  +  ++ + +         ++E A+ W       + ++ N
Sbjct: 61  SFRYDDGLVDYVKYLTGIRETVHRDVISFEAAAADDT-MSLEVALQWSGSFQESVHTFAN 119

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I T EGGTHE G R ALT  +  + E      K+   +  DD+      I+SV + EP+
Sbjct: 120 AINTHEGGTHEEGFRAALTSLVNGFGEDQGMIKKKEDRLTGDDIREGLTAIISVKLAEPQ 179

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE- 437
           F GQTKTKL + + +  V+  + D    +  QNP E  +++      +  R+  RK R+ 
Sbjct: 180 FEGQTKTKLGNTEVKGFVQRVVNDKLGAWFEQNPAEGREIIRKASAAASARIAARKARDL 239

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
             NRK  +    LPGKLADC        E++IVEGDSAGGSAK  R+   QA+LP+RGKI
Sbjct: 240 ARNRKGLLGGGGLPGKLADCQSTNPEECEVYIVEGDSAGGSAKGGRDPKFQAILPIRGKI 299

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556
           LNV  A  +K+  N ++  ++ ALG      + E+ LRY K++IM DADVDG HI +LLL
Sbjct: 300 LNVEKARIDKVLQNNEVQAIISALGTGIHEDFDEDKLRYHKIVIMADADVDGQHIRTLLL 359

Query: 557 TFFYQEMYDLI 567
           T  ++ M  LI
Sbjct: 360 TLLFRFMRPLI 370


>gi|170177824|gb|ACB10238.1| GyrB [Aeromonas aquariorum]
          Length = 348

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 124/358 (34%), Positives = 193/358 (53%), Gaps = 16/358 (4%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K 
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTL-FHYEILAKR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F  
Sbjct: 59  LRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHF 111

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +  
Sbjct: 112 TTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKE 168

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +
Sbjct: 169 DYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADF 228

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
           L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL
Sbjct: 229 LLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSEL 288

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           +IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC  
Sbjct: 289 YIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGI 346


>gi|170177822|gb|ACB10237.1| GyrB [Aeromonas aquariorum]
          Length = 347

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 124/358 (34%), Positives = 193/358 (53%), Gaps = 16/358 (4%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K 
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTL-FHYEILAKR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F  
Sbjct: 59  LRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHF 111

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +  
Sbjct: 112 TTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKE 168

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +
Sbjct: 169 DYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADF 228

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
           L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL
Sbjct: 229 LLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSEL 288

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           +IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC  
Sbjct: 289 YIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGI 346


>gi|92919033|gb|ABE96863.1| DNA gyrase subunit B [Aeromonas sp. MDC285]
          Length = 349

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 123/356 (34%), Positives = 191/356 (53%), Gaps = 16/356 (4%)

Query: 173 VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQ 232
           + R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K  +
Sbjct: 2   IRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEILAKRLR 59

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   T
Sbjct: 60  ELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTT 112

Query: 293 EKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ- 350
           E+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +    
Sbjct: 113 EQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDY 169

Query: 351 -NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
             K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L+
Sbjct: 170 SKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLL 229

Query: 410 QNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFI 468
           +NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+I
Sbjct: 230 ENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYI 289

Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC  
Sbjct: 290 VEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGI 345


>gi|148762425|dbj|BAF63914.1| DNA gyrase subunit B [Virgibacillus salarius]
 gi|148762457|dbj|BAF63930.1| DNA gyrase subunit B [Virgibacillus sp. Sa3-1I]
          Length = 325

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 110/336 (32%), Positives = 173/336 (51%), Gaps = 15/336 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG SVVNALS  L V V R N I   +F +G+P   +E   +  +  GT  
Sbjct: 1   YKVFGGLHGVGASVVNALSTNLEVHVHRDNKIHYLQFKKGVPQGEIEVVGET-DITGTIT 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F PDP+IF +   ++   L +  +  A+L+  +       +  +E         +++ G
Sbjct: 60  HFNPDPEIFNETTTYNFDTLSQRLRELAFLNKGINISIEDKRTDSE------PINYHYEG 113

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDE 326
           G+ +Y++     + ++    F  + E++G    +VE AI + +        + N I T E
Sbjct: 114 GISSYVEYINRTKEILHEP-FYAEGEEQGI---SVEVAIQYNDGFTSNLYSFANNIHTYE 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GG HESG +  LTR I  YA      +    ++  DD+      I+SV   +P+F GQTK
Sbjct: 170 GGMHESGFKTGLTRVINDYARKNNLFKENDPNLSGDDVREGLTAIVSVKHPDPQFEGQTK 229

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTA 443
           TKL + + +   ++   + F  +L +NP  A  ++E  ++        ++ +    RK+A
Sbjct: 230 TKLGNSEVRTVTDSVFSETFSKFLFENPNVAKIVVEKGLMASRARAAAKKARELTRRKSA 289

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADCS   A  +EL+IVEGDSAGGSAK
Sbjct: 290 LEVSNLPGKLADCSSKDAKISELYIVEGDSAGGSAK 325


>gi|106895916|gb|ABE96853.1| DNA gyrase subunit B [Aeromonas encheleia]
          Length = 342

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 120/353 (33%), Positives = 191/353 (54%), Gaps = 15/353 (4%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           +T+ R   ++ Q +  G P +PL++     +  GT + F P P IF D   +    L K 
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTL-YHYEILAKR 59

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F  
Sbjct: 60  LRELSFLNSGVSIRLEDERDGRE-------MHFCYEGGIKAFVEYLNQNKTPIHPKVFHF 112

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +  
Sbjct: 113 STEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKE 169

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +
Sbjct: 170 DYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEF 229

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
           L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL
Sbjct: 230 LLENPSDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSEL 289

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
           +IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ A
Sbjct: 290 YIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 342


>gi|106895920|gb|ABE96855.1| DNA gyrase subunit B [Aeromonas sp. MDC69]
          Length = 342

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 119/353 (33%), Positives = 190/353 (53%), Gaps = 15/353 (4%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           +T+ R   ++ Q +  G P +PL++     +  GT + F P P IF D   +    L K 
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTL-YHYEILAKR 59

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F  
Sbjct: 60  LRELSFLNSGVSIRLEDERDGRE-------MHFCYEGGIKAFVEYLNQNKTPIHPKVFHF 112

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +  
Sbjct: 113 STEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKE 169

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +
Sbjct: 170 DYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEF 229

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
           L++NP +A  ++  +I+ +  R   R  RE   RK A+    LPGKLADC +     +EL
Sbjct: 230 LLENPSDAKIVVNKIIDAARAREAARTARELTRRKGALDIAGLPGKLADCQEKDPALSEL 289

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
           +IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ A
Sbjct: 290 YIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 342


>gi|307343784|emb|CBJ19497.1| gyrase B subunit [Micromonospora rifamycinica]
          Length = 355

 Score =  170 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 105/360 (29%), Positives = 180/360 (50%), Gaps = 9/360 (2%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V + +   ++ QK+    P    +   +  ++ G+ ++F PDP +F     FD   + + 
Sbjct: 2   VEIHKSGFVWRQKYHNSKPDPLDK--GETTDRTGSAVSFWPDPDVFETV-DFDFQTIYRR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            Q  A+L+  +      ++    + G P +  FY+ GG+  +++    +++ +   +   
Sbjct: 59  LQEMAFLNRALSIHLLDERVAEGEEGKPREVTFYYEGGIADFVRHLNASKNPMHKTVVEF 118

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             E++G    +VE A+ W E     + ++ NTI T EGGTHE G R ALT  + +Y    
Sbjct: 119 AAEEEG---MSVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRAALTSVVNRYGSDK 175

Query: 350 QNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
           +  +    +  +D+      I+SV +  P+F GQTKTKL +   +  V+    D    + 
Sbjct: 176 KLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWF 235

Query: 409 VQNPIEATKLLE-WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
            +NP EA  +++            ++ ++   RK+ +    +PGKLADC       +E+F
Sbjct: 236 DRNPAEAKTIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVF 295

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           IVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG      
Sbjct: 296 IVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGIHDD 355


>gi|124300765|dbj|BAF45880.1| gyrase B [Erwinia mallotivora]
          Length = 333

 Score =  170 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 113/344 (32%), Positives = 184/344 (53%), Gaps = 15/344 (4%)

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
            R+  +  Q +  G+P +PL    +  +  GTR+ F P  + F +   F+   L K  + 
Sbjct: 1   RREGKVHQQIYVHGVPQAPLSVTGET-DLTGTRVRFWPSHETFTNVTDFEYEILAKRLRE 59

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            ++L+  V       ++        +K+ +++ GG+K +++    N++ I   +F   TE
Sbjct: 60  LSFLNSGVSIKLEDKRD-------DKKDHYHYEGGIKAFVEYLNRNKTPIHPNVFYFSTE 112

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350
           K G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +     
Sbjct: 113 KDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYS 169

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++
Sbjct: 170 KKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLGEYLLE 229

Query: 411 NPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           NP +A  ++  +I+ +  R   R+ R    RK A+    LPGKLADC +     +E+++V
Sbjct: 230 NPGDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSEIYLV 289

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           EGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+  +Q++
Sbjct: 290 EGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEV 333


>gi|324962658|gb|ADY62431.1| gyrase subunit B [Frankia sp. BMG5.12]
          Length = 417

 Score =  170 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 108/387 (27%), Positives = 163/387 (42%), Gaps = 68/387 (17%)

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G + V DNGRGIPV  HP      T+E++LTTLHAGGKFD  +Y +SGGLHGVG+
Sbjct: 1   TLLADGGVRVTDNGRGIPVGEHP-VKKIPTVELVLTTLHAGGKFDGKSYAVSGGLHGVGV 59

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS  L V + R+   + Q ++   P +PL K    +      ITF  DP IF   
Sbjct: 60  SVVNALSTRLDVAIEREGHSWFQPYAGSRPAAPLAKTGTSKKTGT-TITFWADPTIFET- 117

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG----------------------- 256
             +    L +  Q  A+L+  +      ++  A K                         
Sbjct: 118 TTYKYETLFRRLQEMAFLNKGLSITLRDERGPAAKDPARAAKAVAAAAAEDGADGSPDGV 177

Query: 257 -----------------------------IPEKEEFYFPGGLKTYLQTKLENRSLISSEI 287
                                         P +  F +  GL  ++      +  I   +
Sbjct: 178 ETDAAGVAAEVTAAVDGSGAAAAEALEAAEPTEVTFKYDNGLVDFVGHLNATKEAIHRSV 237

Query: 288 FTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYA 346
            + + +  G      E A+ W       + ++ NTI T EGGTHE G R ALT  +  YA
Sbjct: 238 ISLEAQGTGI---EAELAMQWNGGYNESVYTFANTINTHEGGTHEEGFRAALTSAVNAYA 294

Query: 347 ELTQNKRAISI---------ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           +     + +             DD+      I+SV + +P+F GQTKTKL + +A++ V+
Sbjct: 295 KDQNLLKPVKAGSKNSDERLSGDDIREGLTAIISVKLAQPQFEGQTKTKLGNTEAKKFVQ 354

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIE 424
                    +   N  EA  ++   ++
Sbjct: 355 EMCYAALKDWFEVNRTEARAIVSKALD 381


>gi|170177818|gb|ACB10235.1| GyrB [Aeromonas aquariorum]
          Length = 349

 Score =  170 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 124/356 (34%), Positives = 193/356 (54%), Gaps = 16/356 (4%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K 
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTL-FHYEILAKR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F  
Sbjct: 59  LRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHF 111

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +  
Sbjct: 112 TTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKE 168

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +
Sbjct: 169 DYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADF 228

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
           L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL
Sbjct: 229 LLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSEL 288

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           +IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC
Sbjct: 289 YIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGC 344


>gi|106895922|gb|ABE96856.1| DNA gyrase subunit B [Aeromonas sp. MDC70]
          Length = 341

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 119/352 (33%), Positives = 190/352 (53%), Gaps = 15/352 (4%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           +T+ R   ++ Q +  G P +PL++     +  GT + F P P IF D   +    L K 
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTL-YHYEILAKR 59

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F  
Sbjct: 60  LRELSFLNSGVSIRLEDERDGRE-------MHFCYEGGIKAFVEYLNQNKTPIHPKVFHF 112

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +  
Sbjct: 113 STEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKE 169

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +
Sbjct: 170 DYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEF 229

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
           L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL
Sbjct: 230 LLENPSDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSEL 289

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
           +IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ 
Sbjct: 290 YIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLIT 341


>gi|124300714|dbj|BAF45865.1| gyrase B [Erwinia amylovora]
 gi|124300716|dbj|BAF45866.1| gyrase B [Erwinia amylovora]
 gi|124300718|dbj|BAF45867.1| gyrase B [Erwinia amylovora]
 gi|124300720|dbj|BAF45868.1| gyrase B [Erwinia amylovora]
 gi|124300722|dbj|BAF45869.1| gyrase B [Erwinia pyrifoliae]
 gi|124300753|dbj|BAF45874.1| gyrase B [Erwinia amylovora]
 gi|124300755|dbj|BAF45875.1| gyrase B [Erwinia amylovora]
 gi|124300757|dbj|BAF45876.1| gyrase B [Erwinia amylovora]
 gi|124300759|dbj|BAF45877.1| gyrase B [Erwinia amylovora]
 gi|124300761|dbj|BAF45878.1| gyrase B [Erwinia amylovora]
          Length = 333

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 110/344 (31%), Positives = 183/344 (53%), Gaps = 15/344 (4%)

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
            R+  +  Q +  G+P + L    +  +  GTR+ F P  + F +   F+   L K  + 
Sbjct: 1   RREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRE 59

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            ++L+  V       ++        + + +++ GG+K +++   +N++ I   +F   TE
Sbjct: 60  LSFLNSGVSIKLEDKRD-------GKNDHYHYEGGIKAFVEYLNKNKTPIHPNVFYFSTE 112

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350
           K G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +     
Sbjct: 113 KDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYS 169

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++
Sbjct: 170 KKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLE 229

Query: 411 NPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           +P +A  ++  +I+ +  R   R+ R    RK A+    LPGKLADC +     +E+++V
Sbjct: 230 HPGDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSEIYLV 289

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           EGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+  +Q++
Sbjct: 290 EGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEV 333


>gi|13487323|gb|AAK27494.1|AF343331_1 DNA gyrase B [Cycloclasticus sp. W]
          Length = 362

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 128/366 (34%), Positives = 197/366 (53%), Gaps = 17/366 (4%)

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           + +G P+ PL+         GT + F+P    F +   F    L K  +  ++L+  V+ 
Sbjct: 9   YKKGEPVEPLKVVGPTEK-TGTSLRFKPSIGTFSNI-EFHFDLLAKRLRELSFLNSGVRI 66

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
             S ++   E       E F + GG+K ++    +N+S I   I     +K       VE
Sbjct: 67  RLSDERTAKE-------EIFEYEGGIKAFVNHLNKNKSQIHENIIYINVDKNDV---NVE 116

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISD 360
            A+ W +     I  Y N I   +GGTH +G R  LTR + +Y E +    K+ ++   D
Sbjct: 117 VALQWNDSYQENIFCYTNNIPQRDGGTHLAGFRAGLTRTLNQYIEGSGLAKKQKVTTSGD 176

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D       +LSV + +P+F+  TK KLVS + +  VE++L +    +L++NP EA ++  
Sbjct: 177 DAREGLTAVLSVKVPDPKFSSLTKDKLVSSEVKSIVESSLAEALQEFLLENPTEAKEIAG 236

Query: 421 WVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
            ++E +  R   RK      RK+A+    LPGKLADC +     +E+F+VEGDSAGGSAK
Sbjct: 237 KMLEAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKDPALSEIFLVEGDSAGGSAK 296

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
           Q R+R  QA+LPL+GKILNV  A  +K  ++ ++  L+ ALGC   + +Y+ E+LRY K+
Sbjct: 297 QGRDRRTQAILPLKGKILNVEKARFDKTLSSDEVGTLITALGCGIGKEEYKPENLRYHKI 356

Query: 539 IIMTDA 544
           IIMTDA
Sbjct: 357 IIMTDA 362


>gi|307343822|emb|CBJ19516.1| gyrase B subunit [Micromonospora sp. GUI41]
          Length = 355

 Score =  170 bits (430), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 105/360 (29%), Positives = 183/360 (50%), Gaps = 9/360 (2%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V + +  +++ Q ++   P    +   +  ++ G+ ++F PDP +F     FD   + + 
Sbjct: 2   VEIHKSGSVWRQHYTHSKPGPLEK--GETTDRTGSAVSFWPDPDVFETV-EFDFQTIYRR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            Q  A+L+  ++     ++   E+ G   +  FY+ GG+  +++    ++S I   +   
Sbjct: 59  LQEMAFLNRALRIHLLDERVAEEEDGRQREVTFYYEGGIADFVRHLNASKSPIHKTVVEF 118

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
           + E++G    ++E A+ W E     + ++ NTI T EGGTHE G R ALT  + +Y    
Sbjct: 119 EAEEEG---MSLEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSVVNRYGTDK 175

Query: 350 QNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
           +  +    +  +D+      I+SV +  P+F GQTKTKL +   +  V+    D    + 
Sbjct: 176 KLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWF 235

Query: 409 VQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
            +NP EA  ++ +           ++ ++   RK+ +    +PGKLADC       +E+F
Sbjct: 236 DRNPAEAKMIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVF 295

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           IVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG      
Sbjct: 296 IVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGIHDD 355


>gi|193788043|dbj|BAG50522.1| DNA gyrase subunit B [bacterium GMW-4]
 gi|193788049|dbj|BAG50525.1| DNA gyrase subunit B [bacterium GMW-12]
 gi|193788055|dbj|BAG50528.1| DNA gyrase subunit B [bacterium GMW-23]
          Length = 346

 Score =  170 bits (430), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 123/355 (34%), Positives = 190/355 (53%), Gaps = 16/355 (4%)

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
            R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K  + 
Sbjct: 1   RRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEILAKRLRE 58

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE
Sbjct: 59  LSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTE 111

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350
           + G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +     
Sbjct: 112 QDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYS 168

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++
Sbjct: 169 KKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLE 228

Query: 411 NPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IV
Sbjct: 229 NPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIV 288

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           EGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC  
Sbjct: 289 EGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGI 343


>gi|307343798|emb|CBJ19504.1| gyrase B subunit [Micromonospora sp. GUI8]
          Length = 358

 Score =  170 bits (430), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 105/363 (28%), Positives = 184/363 (50%), Gaps = 9/363 (2%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V + +  +++ Q ++   P    +   +  ++ G+ ++F PDP +F     FD   + + 
Sbjct: 2   VEIHKSGSVWRQHYTNSKPSPLEK--GETTDRTGSAVSFWPDPDVFETV-DFDFQTIYRR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            Q  A+L+  ++     ++   E+ G   +  FY+ GG+  +++    ++S I   +   
Sbjct: 59  LQEMAFLNRALRIHLLDERVAEEEDGRQREVTFYYEGGIADFVRHLNASKSPIHKTVVEF 118

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
           + E++G    ++E A+ W E     + ++ NTI T EGGTHE G R ALT  + +Y    
Sbjct: 119 EAEEEG---MSLEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSVVNRYGTDK 175

Query: 350 QNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
           +  +    +  +D+      I+SV +  P+F GQTKTKL +   +  V+    D    + 
Sbjct: 176 KLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWF 235

Query: 409 VQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
            +NP EA  ++ +           ++ ++   RK+ +    +PGKLADC       +E+F
Sbjct: 236 DRNPAEAKMIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVF 295

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           IVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG      
Sbjct: 296 IVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGIHDD 355

Query: 528 YRE 530
           +  
Sbjct: 356 FDM 358


>gi|195926958|dbj|BAG68366.1| gyrase B [Campylobacter concisus]
          Length = 339

 Score =  170 bits (430), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 124/353 (35%), Positives = 189/353 (53%), Gaps = 18/353 (5%)

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L V + R   +  Q+F++GIP S LE   K  N+ GT++ F PD  IF    
Sbjct: 1   VVNALSKKLVVNIKRDGKLHRQEFAKGIPQSDLEVI-KTTNRTGTQVEFWPDDSIFEVT- 58

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   L+K  +  AYL+ ++   +   +           E F+F GGL++++     N+
Sbjct: 59  EFDDEILVKRFRELAYLNPKITINFKDQR-------NGRSESFHFEGGLESFVTDM--NK 109

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALT 339
           +   S+  +    +       V++A+ + +   E   S+ N I T +GGTHE+G R  LT
Sbjct: 110 ANAVSKAVSFSGGEDDVM---VDFALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRAGLT 166

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y +      ++   I  +D+    + ++SV + EP+F GQTK KL S   +  V+
Sbjct: 167 RVITNYVQANAAAREKDTKITGEDIREGLIAVVSVKVPEPQFEGQTKGKLGSSYVKPIVQ 226

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
             + D    Y  +NPIEA  +++  +  +  R   +K R+   +K ++    LPGKLADC
Sbjct: 227 KMVFDVLTKYFEENPIEARAIMDKALMAARGREAAKKARDLTRKKESMSVGTLPGKLADC 286

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
                  +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +KI  
Sbjct: 287 QSKDPVISELYLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKARLDKILK 339


>gi|238767796|dbj|BAH66659.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768342|dbj|BAH66734.1| DNA gyrase subunit beta [Aeromonas sp. KC2]
 gi|238768344|dbj|BAH66735.1| DNA gyrase subunit beta [Aeromonas sp. KC3]
          Length = 339

 Score =  170 bits (430), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 119/349 (34%), Positives = 190/349 (54%), Gaps = 15/349 (4%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L +T+ R   ++ Q +  G P++PL++     +  GT + F P P IF D   +    L 
Sbjct: 2   LLLTIRRNGHVYEQTYHLGEPVAPLKQIGDSSSGTGTEVRFWPSPTIFTDTL-YHYEILA 60

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F
Sbjct: 61  KRLRELSFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVEYLNQNKTPIHPKVF 113

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
              TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +
Sbjct: 114 HFSTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMD 170

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                 K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +   
Sbjct: 171 KEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLG 230

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +
Sbjct: 231 EFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALS 290

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 291 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEV 339


>gi|106895895|gb|ABF82648.1| DNA gyrase subunit B [Aeromonas allosaccharophila]
          Length = 348

 Score =  170 bits (430), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 123/358 (34%), Positives = 193/358 (53%), Gaps = 16/358 (4%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   +    L K 
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFTDTL-YHYEILAKR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F  
Sbjct: 59  LRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHF 111

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +  
Sbjct: 112 TTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKE 168

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +
Sbjct: 169 DYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADF 228

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
           L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL
Sbjct: 229 LLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSEL 288

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           +IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC  
Sbjct: 289 YIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGI 346


>gi|106895890|gb|ABF82647.1| DNA gyrase subunit B [Aeromonas allosaccharophila]
          Length = 349

 Score =  170 bits (430), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 123/358 (34%), Positives = 193/358 (53%), Gaps = 16/358 (4%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   +    L K 
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFTDTL-YHYEILAKR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F  
Sbjct: 59  LRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHF 111

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +  
Sbjct: 112 TTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKE 168

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +
Sbjct: 169 DYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADF 228

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
           L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL
Sbjct: 229 LLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSEL 288

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           +IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC  
Sbjct: 289 YIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGI 346


>gi|170177814|gb|ACB10233.1| GyrB [Aeromonas aquariorum]
          Length = 348

 Score =  170 bits (430), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 123/356 (34%), Positives = 191/356 (53%), Gaps = 16/356 (4%)

Query: 173 VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQ 232
           + R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K  +
Sbjct: 2   IRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTL-FHYEILAKRLR 59

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   T
Sbjct: 60  ELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTT 112

Query: 293 EKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ- 350
           E+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +    
Sbjct: 113 EQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDY 169

Query: 351 -NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
             K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L+
Sbjct: 170 SKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLL 229

Query: 410 QNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFI 468
           +NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+I
Sbjct: 230 ENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYI 289

Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC  
Sbjct: 290 VEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGI 345


>gi|170177812|gb|ACB10232.1| GyrB [Aeromonas aquariorum]
          Length = 349

 Score =  170 bits (430), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 123/356 (34%), Positives = 191/356 (53%), Gaps = 16/356 (4%)

Query: 173 VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQ 232
           + R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K  +
Sbjct: 2   IRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTL-FHYEILAKRLR 59

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   T
Sbjct: 60  ELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTT 112

Query: 293 EKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ- 350
           E+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +    
Sbjct: 113 EQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDY 169

Query: 351 -NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
             K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L+
Sbjct: 170 SKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLL 229

Query: 410 QNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFI 468
           +NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+I
Sbjct: 230 ENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYI 289

Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC  
Sbjct: 290 VEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGI 345


>gi|6644323|gb|AAF21008.1|AF208257_1 DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 384

 Score =  170 bits (430), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 128/393 (32%), Positives = 203/393 (51%), Gaps = 23/393 (5%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
            +  Y +  GL        NAL D+L +T+ R   ++ Q +  G P +PL++        
Sbjct: 1   SDDVYVVDMGL-------ANALCDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TT 52

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F P P IF D   F    L K  +  ++L+  V      +++  E         F
Sbjct: 53  GTEVRFWPSPTIFSDTL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE-------AHF 104

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG+K +++   +N++ I  ++F   TE+ G     V+ A+ W +     +  + N I
Sbjct: 105 CYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGI---GVQVAMQWNDAYQEGVYCFTNNI 161

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +G T   G R ALTR +  Y +      K   +   D++    + ++SV + +P+F+
Sbjct: 162 PERDGRTQLVGFRTALTRTLNFYMDKEDYSKKAKSAASGDNVREGLIAVISVKVPDPKFS 221

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VN 439
            QTK KLVS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   
Sbjct: 222 SQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTR 281

Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
           RK A+    LPGKLADC +     +E +IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 282 RKGALDIAGLPGKLADCQEKDPALSEPYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 341

Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
             A  +K+ ++QQ+  L+ ALG        ++D
Sbjct: 342 EKARFDKMISSQQVGTLITALGYGIGPDECKQD 374


>gi|307343762|emb|CBJ19486.1| gyrase B subunit [Micromonospora citrea]
          Length = 345

 Score =  170 bits (430), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 104/351 (29%), Positives = 179/351 (50%), Gaps = 9/351 (2%)

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
            +   ++ Q++    P    +   +  ++ G+ ++F PDP +F     FD   + +  Q 
Sbjct: 1   HKDGFVWRQQYQNSKPTPLEK--GEPTDRTGSAVSFWPDPDVFETV-DFDFQTIYRRLQE 57

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            A+L+  V      ++   E+ G P +  F + GG+  +++    +++ I   +    +E
Sbjct: 58  MAFLNRGVTIHLLDERVPEEEEGKPREVTFCYKGGIADFVRHLNASKNPIHKTVVEFGSE 117

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK 352
           ++G    +VE A+ W E     + ++ NTI T EGGTHE G R ALT  + +Y    +  
Sbjct: 118 EEG---MSVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRAALTSVVNRYGTEKKLL 174

Query: 353 R-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           +    +  +D+      I+SV +  P+F GQTKTKL +   +  V+    +    +  +N
Sbjct: 175 KGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNEWLVDWFDRN 234

Query: 412 PIEATKLLE-WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P EA  +++            ++ ++   RK+ +    +PGKLADC       +E+FIVE
Sbjct: 235 PAEAKIIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVE 294

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
           GDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG
Sbjct: 295 GDSAGGSAKQGRDPRVQAILPIRGKILNVEKARIDRVLKNAEVQALITALG 345


>gi|32364168|gb|AAP80232.1| GyrB [Pasteurella multocida]
          Length = 361

 Score =  170 bits (430), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 123/373 (32%), Positives = 195/373 (52%), Gaps = 16/373 (4%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NA   +  +T+ RQ  +  Q +  G P +PL    +  ++ GT + F P P IF +   F
Sbjct: 1   NAFPIKFQLTIRRQGKVHEQIYHLGEPQAPLAAIGET-DQTGTAVRFWPSPTIFNNI-EF 58

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L K  +  ++L+  V       +          ++ F++ GG++ +++    N++ 
Sbjct: 59  EYDILAKRLRELSFLNSGVSIKLFDKR-------NDRQDHFHYEGGIQAFVEYPNRNKNP 111

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           I  + F   TEK G     VE ++ W +     +  + N I   +GGTH +G R ALTR 
Sbjct: 112 IHQKPFYFSTEKDGI---GVEVSMQWNDSFNENVYCFTNNIPQRDGGTHLAGFRGALTRS 168

Query: 342 IKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +  Y +       R ++   DD     V I+SV + +P+F+ QTK KLVS + +  VE+ 
Sbjct: 169 LNNYMDNEVIIKNRKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESV 228

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458
           + +    YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLADC +
Sbjct: 229 MNEYLQQYLLENPSDAKIIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQE 288

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++ ++  L+ 
Sbjct: 289 RDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSAEVGTLIT 348

Query: 519 ALGCRTRSQYREE 531
           ALGC         
Sbjct: 349 ALGCGIGRDEYNP 361


>gi|269799062|gb|ACZ43809.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 316

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 107/326 (32%), Positives = 173/326 (53%), Gaps = 15/326 (4%)

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L +T+ R   I  Q +  G P +P+ 
Sbjct: 1   TVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELTIHRHGHIHQQIYRHGEPQAPIA 60

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
               + +  GT + F P  + F +   F    L K  +  ++L+  V      ++E    
Sbjct: 61  VIGDI-DTTGTELRFWPSHETFTNTL-FHYDILAKRLRELSFLNSGVSIKLIDERED--- 115

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313
               + + F + GG+K ++     N++ I+ + F    E++     TVE A+ W +    
Sbjct: 116 ---GKSDHFVYEGGIKAFVDYLNVNKTPINKDAFHFSVERED--GITVEVAMQWNDGFQE 170

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAE---LTQNKRAISIISDDLMISAVGIL 370
            I  + N I   +GGTH +G R ALTR +  Y E     +  ++ +   DD       ++
Sbjct: 171 GIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVI 230

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS-EER 429
           SV + +P+F+ QTK KLVS + +  VE A+ +    YL++NP EA+ ++  +I+ S    
Sbjct: 231 SVKVPDPKFSSQTKDKLVSSEVKSAVEQAMGEKLAEYLLENPKEASTVVTKIIDASRARE 290

Query: 430 LRRRKQREVNRKTAIRKLRLPGKLAD 455
             R+ +    RK A+    LPGKLAD
Sbjct: 291 AARKAREMTRRKGALDLAGLPGKLAD 316


>gi|307343826|emb|CBJ19518.1| gyrase B subunit [Micromonospora sp. GUI43]
          Length = 354

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 105/359 (29%), Positives = 183/359 (50%), Gaps = 9/359 (2%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V + +  +++ Q ++   P    +   +  ++ G+ ++F PDP +F     FD   + + 
Sbjct: 2   VEIHKSGSVWRQHYTNSKPSPLEK--GETTDRTGSAVSFWPDPDVFETV-DFDFQTIYRR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            Q  A+L+  ++     ++   E+ G   +  FY+ GG+  +++    ++S I   +   
Sbjct: 59  LQEMAFLNRALRIHLLDERVAEEEDGRQREVTFYYEGGIADFVRHLNASKSPIHKTVVEF 118

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
           + E++G    ++E A+ W E     + ++ NTI T EGGTHE G R ALT  + +Y    
Sbjct: 119 EAEEEG---MSLEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSVVNRYGTDK 175

Query: 350 QNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
           +  +    +  +D+      I+SV +  P+F GQTKTKL +   +  V+    D    + 
Sbjct: 176 KLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWF 235

Query: 409 VQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
            +NP EA  ++ +           ++ ++   RK+ +    +PGKLADC       +E+F
Sbjct: 236 DRNPAEAKMIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVF 295

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS 526
           IVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG     
Sbjct: 296 IVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGIHD 354


>gi|318066819|emb|CBY89121.1| DNA gyrase subunit B [Cobetia marina]
 gi|318066849|emb|CBY89136.1| DNA gyrase subunit B [Halomonas halodurans]
          Length = 349

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 124/360 (34%), Positives = 186/360 (51%), Gaps = 16/360 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +T+ RQ  +  Q +  G+P +PL          GT + F+P P  FG+
Sbjct: 1   VSVVNALSEELKLTIWRQGKVHEQIYRHGVPEAPLAVVGNTEK-SGTLVRFKPSPLTFGN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F++ GGLK ++     
Sbjct: 60  I-AFHYEILAKRLRELSFLNSGVAIRLIDERSGKE-------ELFHYEGGLKAFVDHLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++         + G     VE A+ W +     I  Y N I   +GGTH +G R A
Sbjct: 112 NKAALNPVFHFEMEREDGI---GVEVAMQWNDAFSENIFCYTNNIPQRDGGTHLAGFRAA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  +    DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRTLNSYIEAEGLLKKSKVGTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  +   F  YL++ P EA  ++  +++ +  R   RK      RK A+    LPGKLA
Sbjct: 229 VEQEMGRLFSEYLIEKPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLA 288

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 289 DCQEKDPSLSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 348


>gi|307343792|emb|CBJ19501.1| gyrase B subunit [Micromonospora viridifaciens]
          Length = 348

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 103/354 (29%), Positives = 178/354 (50%), Gaps = 9/354 (2%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V + +   ++ Q++    P    +   +  ++ G+ ++F PDP +F     FD   + + 
Sbjct: 1   VEIHKDGYVWRQQYHHSKPTPLEK--GESTDRTGSAVSFWPDPDVFETV-DFDFQTIYRR 57

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            Q  A+L+  +      ++    + G P +  F + GG+  +++    +++ I   +   
Sbjct: 58  LQEMAFLTRGLTIHLLDERVEDGEEGKPREVTFRYEGGIADFVRHLNASKNPIHRTVVEF 117

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             E++G    + E A+ W E     + ++ N I T EGGTHE G R ALT  I +Y    
Sbjct: 118 GAEEEG---MSAEIAMQWNESYGESVYTFANNINTHEGGTHEEGFRAALTSVINRYGAEK 174

Query: 350 QNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
           +  +    +  +D+      I+SV +  P+F GQTKTKL +   +  V+    +    +L
Sbjct: 175 KLLKGDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTPVKSFVQRVCNEWLVDWL 234

Query: 409 VQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
            +NP EA  ++ +           ++ ++   RK+ +    +PGKLADC       +E+F
Sbjct: 235 DRNPAEAKTIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVF 294

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
           IVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG
Sbjct: 295 IVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALG 348


>gi|238058454|gb|ACR39378.1| truncated DNA gyrase subunit B [Aeromonas hydrophila]
          Length = 342

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 120/353 (33%), Positives = 188/353 (53%), Gaps = 16/353 (4%)

Query: 167 DELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAAR 226
             L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F    
Sbjct: 1   TRLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEI 58

Query: 227 LLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSE 286
           L K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I  +
Sbjct: 59  LAKRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPK 111

Query: 287 IFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY 345
           +F   TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y
Sbjct: 112 VFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSY 168

Query: 346 AELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDP 403
            +      K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ + 
Sbjct: 169 MDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEK 228

Query: 404 FDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAH 462
              +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +    
Sbjct: 229 LADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPA 288

Query: 463 GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
            +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  
Sbjct: 289 LSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGY 341


>gi|321117370|dbj|BAJ72162.1| gyrase B [Erwinia sp. 'uzenensis']
          Length = 333

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 103/343 (30%), Positives = 174/343 (50%), Gaps = 15/343 (4%)

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
            R+  +  Q +  G+P + L    +  +  GTR+ F P  + F +   F+   L K  + 
Sbjct: 1   RREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRE 59

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            ++L+  V       ++        + + +++ GG+K +++   +N++ I    F   TE
Sbjct: 60  LSFLNSGVSIKLEDKRD-------GKNDHYHYEGGIKAFVEYLNKNKTPIHPNAFYFSTE 112

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350
           K G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +     
Sbjct: 113 KDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGFS 169

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++
Sbjct: 170 KKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSFEVKSAVEQQMNELLSEYLLE 229

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNR-KTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           +P +A  ++  +I+ +  R    + RE+ R K A+    LPGKLADC +       +++V
Sbjct: 230 HPGDAKIVVGKIIDAARGREAAPRAREMTRCKGALDLAGLPGKLADCQERDPALFXIYLV 289

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           EGD AGG AKQ RNR  QA+ PL+GKILNV     +K+  + +
Sbjct: 290 EGDFAGGFAKQGRNRKKQAIPPLKGKILNVEKTRFDKMLASPE 332


>gi|307343846|emb|CBJ19528.1| gyrase B subunit [Micromonospora sp. SG8]
          Length = 350

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 105/356 (29%), Positives = 184/356 (51%), Gaps = 9/356 (2%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           + V + +  +++ Q ++   P    +   +  ++ G+ ++F PDP +F     FD   + 
Sbjct: 1   MFVEIHKSGSVWRQHYTNSKPSPLEK--GETTDRTGSAVSFWPDPDVFETV-DFDFQTIY 57

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           +  Q  A+L+  ++     ++   E+ G   +  FY+ GG+  +++    ++S I   + 
Sbjct: 58  RRLQEMAFLNRALRIHLLDERVAEEEDGRQREVTFYYEGGIADFVRHLNASKSPIHKTVV 117

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
             + E++G    ++E A+ W E     + ++ NTI T EGGTHE G R ALT  + +Y  
Sbjct: 118 EFEAEEEG---MSLEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSVVNRYGT 174

Query: 348 LTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
             +  +    +  +D+      I+SV +  P+F GQTKTKL +   +  V+    D    
Sbjct: 175 DKKLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNDRLVD 234

Query: 407 YLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTE 465
           +  +NP EA  ++ +           ++ ++   RK+ +    +PGKLADC       +E
Sbjct: 235 WFDRNPAEAKMIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESE 294

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
           +FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG
Sbjct: 295 VFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALG 350


>gi|148762471|dbj|BAF63937.1| DNA gyrase subunit B [Bacillus licheniformis]
          Length = 327

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 117/336 (34%), Positives = 179/336 (53%), Gaps = 13/336 (3%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG SVVNALS EL VTV R   +  Q+F RG+P + L+   +         
Sbjct: 1   YKVSGGLHGVGASVVNALSTELDVTVYRDGKVHYQEFERGVPKADLKVIGETEVTGT-TT 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PDP+IF +   +D   L    +  A+L+  VK      ++  E+        + + G
Sbjct: 60  HFKPDPEIFTETTEYDYDTLATRVRELAFLTKGVKITIEDKRDGKERKNE-----YCYEG 114

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K+Y++    +R ++  E    +  K G    TVE A+ + +     I S+ N I T E
Sbjct: 115 GIKSYVEHLNRSRGVVHEEPVYIEGSKDGI---TVEVALQYNDSYTSNIYSFANNIHTYE 171

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTHE+G +  LTR I  YA       +   ++  +D+      I+S+   +P+F GQTK
Sbjct: 172 GGTHEAGFKTGLTRVINDYARRNGVFKESDPNLSGEDVREGLTAIISIKHPDPQFEGQTK 231

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTA 443
           TKL + +A+   +    +  + +L++NP  A K++E  V+        ++ +    RK+A
Sbjct: 232 TKLGNSEARTITDALFSEALEKFLLENPDSAKKIVEKGVMAARARMAAKKARELTRRKSA 291

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADCS      +EL+IVEGDSAGGSAK
Sbjct: 292 LEVSNLPGKLADCSSKDPTISELYIVEGDSAGGSAK 327


>gi|294338171|emb|CBJ94207.1| Putative phage DNA topoisomerase (large subunit) [Campylobacter
           phage CPt10]
          Length = 503

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 94/528 (17%), Positives = 177/528 (33%), Gaps = 75/528 (14%)

Query: 49  IRILEGLEPVRMRPGMYIGGTDE---------------------KALHHLFSEVIDNAMD 87
           I+ L   E +  RP MYIG  D                        L  + +E+IDN++D
Sbjct: 2   IKKLTDREHILKRPSMYIGAIDSTNTEDFIIESGKIKYTTLNYVPGLIKIINEIIDNSVD 61

Query: 88  EVIA---GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144
             I         I V +  +  +++ D+G GIPV    K  +    E+      AG  FD
Sbjct: 62  AAIRSKFKSGLNISVKISND-TVSIEDDGTGIPV---IKSGDHYMPELAWNHAKAGSNFD 117

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +    ++ G +GVG    N  S             +  K           +  +   K G
Sbjct: 118 DDANRVTIGTNGVGSYCTNVWSINFKGITDDGKNRYIFKSKNN--AETYSENIEASKKSG 175

Query: 205 TRITFRPDPKIFG--DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
           T + F+PD + F   +        + +   + A     +   ++  K             
Sbjct: 176 TLVEFKPDLERFNLKEIDETHKNIIYQRLLNLAICYPEINFKFNSKKI------------ 223

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
                  K YL     +  L  ++       K G     ++        + +  S+ N +
Sbjct: 224 --DFKSFKNYLNMFSSDFELYENQNI-----KIGIIPNELD--------DFKQFSFVNGL 268

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
              +GG H   +   + +GI+        K       D      +      +   +F  Q
Sbjct: 269 KIPDGGVHIDTIMSNVVQGIRDKLV---KKYKSIKPGDIKNKLMIVCFINGMPNLKFNSQ 325

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           +K K+ +   +    + +   F + +++N      +++ +I+  + +      + +    
Sbjct: 326 SKEKITNSVKEFNDFSNIDYNFINKILKN----KSIIDPIIDIYKVKEALNADKALKSVE 381

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
             +KL+                 L I EG SA G   Q     + +   L+GK LN    
Sbjct: 382 KSKKLKSEKYFRATKSQKY----LCICEGFSAYGGISQVLGNEHTSFYVLKGKPLNSWDV 437

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY-----EKVIIMTDAD 545
            ++K   N+++ +L Q L      +  ++   Y      K  IM + D
Sbjct: 438 TNQKFAANRELSELYQILSENAEFEDLQDGKFYEIKIDGKTYIMNEND 485


>gi|215271438|emb|CAR48208.1| gyrase B subunit [Vibrio parahaemolyticus]
          Length = 350

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 124/360 (34%), Positives = 194/360 (53%), Gaps = 14/360 (3%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LS+++ +T+ R   I +Q +  G P +PL       +K GT+I F P  + F +   F  
Sbjct: 1   LSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKTGTQIRFWPSAETFSNT-EFHY 58

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             L K  +  ++L+  V      ++E        +++ F + GG++ ++Q    N++ I 
Sbjct: 59  DILAKRLRELSFLNSGVSIKLIDEREAD------KQDHFMYEGGIQAFVQHLNTNKTPII 112

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
            +IF    E++     +VE A+ W +     I  + N I   +GGTH +G R ALTR + 
Sbjct: 113 EKIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRTLN 170

Query: 344 KYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE+A+ 
Sbjct: 171 SFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMG 230

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNI 460
           +    +LV+NP EA  +   +I+ +  R   RK R    RK A+    LPGKLADC +  
Sbjct: 231 EKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKD 290

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
               EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ AL
Sbjct: 291 PALFELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 350


>gi|195926970|dbj|BAG68372.1| gyrase B [Campylobacter sputorum biovar sputorum]
          Length = 339

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 123/353 (34%), Positives = 184/353 (52%), Gaps = 18/353 (5%)

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +  VT+ +   I  Q+FS+G+P + LE   + +   GT + F PD +IF    
Sbjct: 1   VVNALSIKFIVTIYKNGKIHRQEFSKGVPTTDLEIIGETKK-TGTTVEFIPDSEIFETT- 58

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F+   L    +  AYL+ ++   +  ++       + + E ++F GGL++++    +  
Sbjct: 59  DFNFDTLSTRFKELAYLNSKITINFKDNR-------VGKHESYHFEGGLESFVNDLNKAN 111

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339
            +  +  F+  +E        V+ A+ + E   E   S+ N I T +GGTHE+G R  LT
Sbjct: 112 PVCKALSFSDFSED-----VVVDVALMYNESYSENVLSFVNNIHTPDGGTHEAGFRAGLT 166

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y        ++   I  +D+    + I+SV + EP+F GQTK KL S   +  V+
Sbjct: 167 RAITNYISSNASAREKDTKISGEDVREGLIAIVSVKVPEPQFEGQTKGKLGSSYVKPIVQ 226

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
               D    +  +NPIEA  ++   +  +  R   ++ R+   +K       LPGKLADC
Sbjct: 227 KITFDTLCKFFEENPIEAKAIMNKALLAARGREAAKRARDLTRKKENFSVGTLPGKLADC 286

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
               A   EL++VEGDSAGGSAKQ RNR  QA+LPLRGKILNV  AG EKI  
Sbjct: 287 QSKEAEICELYLVEGDSAGGSAKQGRNRVFQAILPLRGKILNVEKAGLEKILK 339


>gi|193788047|dbj|BAG50524.1| DNA gyrase subunit B [bacterium GMW-10]
          Length = 346

 Score =  169 bits (429), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 123/355 (34%), Positives = 190/355 (53%), Gaps = 16/355 (4%)

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
            R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K  + 
Sbjct: 1   RRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTL-FHYEILAKRLRE 58

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE
Sbjct: 59  LSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTE 111

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350
           + G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +     
Sbjct: 112 QDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYS 168

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++
Sbjct: 169 KKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLE 228

Query: 411 NPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IV
Sbjct: 229 NPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIV 288

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           EGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC  
Sbjct: 289 EGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGI 343


>gi|238767798|dbj|BAH66660.1| DNA gyrase subunit beta [Aeromonas sobria]
          Length = 339

 Score =  169 bits (429), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 119/349 (34%), Positives = 189/349 (54%), Gaps = 15/349 (4%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L +T+ R   ++ Q +  G P +PL++     +  GT + F P P IF D   +    L 
Sbjct: 2   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTL-YHYEILA 60

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F
Sbjct: 61  KRLRELSFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVEYLNQNKTPIHPKVF 113

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
              TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +
Sbjct: 114 HFSTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMD 170

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                 K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +   
Sbjct: 171 KEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLG 230

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +
Sbjct: 231 EFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALS 290

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 291 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEV 339


>gi|110224974|dbj|BAE97476.1| DNA gyrase subunit B [Streptococcus downei]
          Length = 300

 Score =  169 bits (429), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 102/302 (33%), Positives = 158/302 (52%), Gaps = 12/302 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS  L V V +   I  Q++ RG+ ++ L+      +K G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTSLEVKVHKNGKIHFQEYKRGLVVADLKVIGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PDP+IF +   FD  +L K  Q  A+L+  +K   S  +E  E     + + ++
Sbjct: 60  TTVHFTPDPEIFTETTEFDFDKLAKRIQELAFLNKGLKISISDKREGKE-----QSQVYH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+ +Y+    EN+ ++         E  G    +VE A+ +     E   S+ N I 
Sbjct: 115 YEGGIVSYVDYLNENKEVLFENPIYTDGEMDGI---SVEVAMQYTGTYHENVLSFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G R ALTR I  YA   +   ++  ++  +D+      I+SV    P+F G
Sbjct: 172 THEGGTHEQGFRTALTRVINDYARQNKLLKEKDDNLSGEDVREGLTAIISVKHPNPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + +  +       + F  +L++NP  A K++E  I  S+ R+  ++ REV RK
Sbjct: 232 QTKTKLGNSEVVKITNRLFSEAFSRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRK 291

Query: 442 TA 443
            +
Sbjct: 292 KS 293


>gi|261488472|emb|CAU94911.1| DNA gyrase subunit B [Aquabacterium citratiphilum]
          Length = 320

 Score =  169 bits (429), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 97/309 (31%), Positives = 158/309 (51%), Gaps = 23/309 (7%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           EI LT LHAGGKF+ ++Y++SGGLHGVG+S VN LS  L +TV R       +F +G+P 
Sbjct: 1   EIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNGLSKWLRLTVRRDGKTHFIEFKQGVPQ 60

Query: 191 -----------SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
                      +   +     +KRGT + F PD +IF +   +    L K  +  ++L+ 
Sbjct: 61  DRVIEIRDGVETSPMRITGDTDKRGTEVHFLPDVEIFKENNEYHYDILAKRLRELSFLNN 120

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK--KGT 297
            VK     ++   E         F + GG+K +++   + ++ ++  IF  + +K     
Sbjct: 121 GVKIRLIDERNNKEDN-------FAYAGGVKGFVEFINKGKATLNPNIFHAQGDKLSDQG 173

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               VE A+ W E     +  + N I   +GGTH +GLR A+TR I KY E  +   K  
Sbjct: 174 TNVGVEVAMQWNESYNESVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEDNELAKKAK 233

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           + +  DD+      ++SV + EP+F+ QTK KLVS + +  VE+ +      +L++NPI+
Sbjct: 234 VEVAGDDMREGLACVVSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVXRLLTDWLLENPID 293

Query: 415 ATKLLEWVI 423
           A  +   ++
Sbjct: 294 AKIICGKIV 302


>gi|165882833|gb|ABY71628.1| DNA gyrase B subunit [Spirobacillus cienkowskii]
          Length = 359

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 134/367 (36%), Positives = 198/367 (53%), Gaps = 15/367 (4%)

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS    V V +   +F Q++  GIP   + K        GT  TF+PDP IF +   
Sbjct: 1   VNALSTFCRVEVKKNGGVFEQEYKCGIPQYDVRKIGDTSGH-GTSTTFKPDPTIFQETTE 59

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F    L    +  A+L+  +      +          + +EF + GGL ++++    ++ 
Sbjct: 60  FSFDYLSARLRELAFLNKGICINLVDE-------VNDKSQEFKYDGGLISFVEYLNRSKV 112

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
           +I ++      EK+ T    +E A+ W +     + SY N I T EGGTH +GLR ALTR
Sbjct: 113 VIHNKPIYMFFEKEET---VIEIALQWNDSYSESVYSYANNINTAEGGTHLTGLRGALTR 169

Query: 341 GIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I + A   +  + +      DD+     G++ V +R+P+F GQTK KL +   +  VE+
Sbjct: 170 VINQLASNDKAVQNLKEGLSPDDIREGLTGVVHVKLRDPQFEGQTKNKLANSRIRTLVES 229

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
           +L +    Y  +NP  A K++  +++ +  R+  RK +E   RK+A+    LPGK+ADC 
Sbjct: 230 SLNEKLSDYFHENPDVAKKIISKIVDAARARIAARKAKELTRRKSALDLGGLPGKIADCQ 289

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
                  ELFIVEGDSAGGSAKQ R+R  QAVLPL+GKILNV  A ++K+ +NQ+I  LV
Sbjct: 290 DRDPANCELFIVEGDSAGGSAKQGRDRKTQAVLPLKGKILNVEKATTDKMLSNQEIRLLV 349

Query: 518 QALGCRT 524
           QALG R 
Sbjct: 350 QALGTRN 356


>gi|159576553|dbj|BAF92825.1| DNA gyrase subunit B [Virgibacillus salexigens]
          Length = 325

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 110/336 (32%), Positives = 173/336 (51%), Gaps = 15/336 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG SVVNALS  L V V R N I+   F +G+P   +E   +  +  GT  
Sbjct: 1   YKVFGGLHGVGASVVNALSTSLDVHVHRDNKIYYLAFEKGVPQGEIEVIGET-DITGTIT 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F PDP IF +   ++   L +  +  A+L+  +       +   E         +++ G
Sbjct: 60  HFVPDPTIFTETTEYNFDTLAQRLRELAFLNKGINISIEDKRTDQE------PTSYHYEG 113

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDE 326
           G+K+Y++     +  +    F  + E++G    +VE AI + +        + N I T E
Sbjct: 114 GIKSYVEFINRTKEALHEP-FYSEGEEQGI---SVEVAIQYNDGFTSNLYSFANNIHTYE 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GG+HESG +  LTR I  YA      +    ++  +D+      I+SV   +P+F GQTK
Sbjct: 170 GGSHESGFKTGLTRVINDYARKNNLFKENDPNLSGEDVREGLTAIVSVKHPDPQFEGQTK 229

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTA 443
           TKL + + +   ++   + F  +L +NP  A  ++E  ++        ++ +    RK+A
Sbjct: 230 TKLGNSEVRTVTDSVFSELFSKFLFENPNVAKVVVEKGLMASRARAAAKKARELTRRKSA 289

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADCS   A+ +EL+IVEGDSAGGSAK
Sbjct: 290 LEVSNLPGKLADCSSKDANISELYIVEGDSAGGSAK 325


>gi|261488452|emb|CAU94901.1| DNA gyrase subunit B [Pelomonas saccharophila]
          Length = 338

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 101/323 (31%), Positives = 169/323 (52%), Gaps = 27/323 (8%)

Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178
           + H   P +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S VN LS  L +TV +   
Sbjct: 1   DKHE--PKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNGLSKFLRLTVRQNGK 58

Query: 179 IFSQKFSRGIPLS------------PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAAR 226
           +   +F++GIP +            P++   +  +KRGT + F PD +IF +   +    
Sbjct: 59  VHFIEFAKGIPQNGESVVVDGFXTRPMKVIGET-DKRGTEVHFLPDTEIFKENNDYHYDI 117

Query: 227 LLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSE 286
           L K  +  ++L+  VK     ++   E         F + GG+K +++   + ++++   
Sbjct: 118 LAKRLRELSFLNNGVKIRLVDERSNKEDN-------FAYAGGVKGFVEFINKGKTVLHPN 170

Query: 287 IFTGKTEK--KGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRGIK 343
           IF    +K         VE A+ W +  N  +  + N I   +GGTH +GLR A+TR I 
Sbjct: 171 IFHAIGDKMSDQGTNIGVEVAMQWNDGFNENVLCFTNNIPQRDGGTHLTGLRAAMTRVIN 230

Query: 344 KYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
           KY E  +   K  + +  DD+      ++SV + EP+F+ QTK KLVS + +  VE+ + 
Sbjct: 231 KYIEDNELAKKAKVEVAGDDMREGLACVVSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVS 290

Query: 402 DPFDHYLVQNPIEATKLLEWVIE 424
                YL++NP++A  +   +++
Sbjct: 291 RLLTDYLLENPLDAKTICGKILD 313


>gi|58415312|emb|CAH04914.1| DNA gyrase subunit B [Mycetocola lacteus]
 gi|117675823|emb|CAL69182.1| DNA gyrase subunit B [Mycetocola lacteus]
          Length = 358

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 113/358 (31%), Positives = 172/358 (48%), Gaps = 16/358 (4%)

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
              F  G+  +PL K E   ++ GT ITF P+ +IF     FD   L    Q  A+L+  
Sbjct: 1   RATFHNGVADAPLSKDEAT-DETGTTITFWPNAEIFETV-EFDYDTLRTRFQQMAFLNKG 58

Query: 241 VKTCWSCDKEIAEKYG---------IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGK 291
           ++     ++    +             +   F++  GL  Y++     +           
Sbjct: 59  LRIELIDERVDEIEEPVDGEEAAVPTKKHNVFHYERGLVDYVEHLNRAKRSELVNDEIIS 118

Query: 292 TEKKGTHR-GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            E++ T R   +E A+ W       + +Y NTI T EGGTHE G R ALT  + +YA   
Sbjct: 119 FEQEDTERKIALEIAMQWTTSYSESVHTYANTINTHEGGTHEEGFRAALTTLVNRYAREK 178

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
                +  ++  DD+      ++S+ + EP+F GQTKTKL + +A+  V+  + D    +
Sbjct: 179 NILKDKDDNLSGDDVREGLTAVISIKLGEPQFEGQTKTKLGNTEAKAFVQKVVGDQLSDW 238

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTEL 466
             +NPI A  ++   +  +  RL  RK RE  R+  +     +PGKL DC       +E+
Sbjct: 239 FERNPIIAKAIITKALSAATARLAARKARETARRKGLLEGGGMPGKLKDCQSKDPSVSEI 298

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           FIVEGDSAGGSA Q RN   QA+LPLRGKILNV  A  ++   N ++  ++ A G   
Sbjct: 299 FIVEGDSAGGSAVQGRNPETQAILPLRGKILNVEKARLDRALGNAEVQAMITAFGAGI 356


>gi|195926976|dbj|BAG68375.1| gyrase B [Campylobacter lari]
          Length = 339

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 126/353 (35%), Positives = 181/353 (51%), Gaps = 18/353 (5%)

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L  TV R   I+ Q+FS G   S  E       K GT I F PD +IF    
Sbjct: 1   VVNALSKKLVATVHRDGEIYRQEFSEGKVTSDFETIG-TSKKTGTIIEFWPDDQIFEITN 59

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   L K  +  AYL+ ++   +  ++       I + E F+F GG+  ++     N+
Sbjct: 60  -FDYEILAKRFRELAYLNPKITINFKDNR-------IGKAESFHFEGGISQFVT--DLNK 109

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALT 339
               ++      +++      VE A+ + +   E   S+ N I T +GGTHE+G R+ LT
Sbjct: 110 KQALTKAIFFNVDEEDV---NVEVALLYNDSYSENLLSFVNNIKTPDGGTHEAGFRMGLT 166

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y E      ++   I  +D+    + ++SV + EP+F GQTK KL S   +  V 
Sbjct: 167 RVISNYIEANASAREKDSKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSSYVRPIVS 226

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL-PGKLADC 456
            A  +    Y  +NPIEA  ++   +  +  R   +K RE+ RK     +   PGKLADC
Sbjct: 227 KASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKETSSVGTLPGKLADC 286

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
                  +E+++VEGDSAGGSAKQ R R+ QA+LPLRGKILNV  A  +KI  
Sbjct: 287 QSKDPSESEIYLVEGDSAGGSAKQGRERTFQAILPLRGKILNVEKARLDKILK 339


>gi|330367271|dbj|BAK19430.1| DNA gyrase subunit B [Helicobacter mastomyrinus]
          Length = 351

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 121/364 (33%), Positives = 188/364 (51%), Gaps = 18/364 (4%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L +T+ +   I+ Q+F++GIP S LE     +   GT I F PD ++      F
Sbjct: 1   NALSKRLIMTINKNGHIYRQEFAKGIPQSNLEIIGDTKKH-GTTIEFFPDGEVMEVL-EF 58

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           DA  L+   +  AYL+  +  C+  ++   E       E ++F GGL  ++Q   +    
Sbjct: 59  DAQILITRFKEMAYLNHNITICFKDERIGLE-------ENYHFDGGLSQFIQDINKK--- 108

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
               I +            +E A+A+ E    ++ S+ N I T +GGTHE+G R  L+R 
Sbjct: 109 --PLISSVIGFDTIEQECEIEVALAYNEGYDEKVLSFVNNIRTPDGGTHEAGFRAGLSRA 166

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  Y E      ++   +  +D+    V I+S  + +P+F GQTK KL S   +  V+  
Sbjct: 167 IMNYIEANASAREKDSKVSGEDVREGLVAIISTKVIDPQFEGQTKGKLGSSFVKPIVQKL 226

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
             +    +  +NP EA  +++  I  +  R   +K R+   +K       LPGKLADC  
Sbjct: 227 TYEKLSKFFEENPNEARAIMQKAIMAARGREAAKKARDLTRKKENFSVGTLPGKLADCQS 286

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+++VEGDSAGGSAKQ R+R+ QA+LPLRGKILNV  +  +KI  + +I +++ 
Sbjct: 287 KDPRESEIYLVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKSRLDKILKSDEIKNMIT 346

Query: 519 ALGC 522
           A GC
Sbjct: 347 AFGC 350


>gi|307343804|emb|CBJ19507.1| gyrase B subunit [Micromonospora sp. GUI14]
          Length = 349

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 105/354 (29%), Positives = 183/354 (51%), Gaps = 9/354 (2%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V + +  +++ Q ++   P    +   +  ++ G+ ++F PDP +F     FD   + + 
Sbjct: 2   VEIHKSGSVWRQHYTHSKPGPLEK--GETTDRTGSAVSFWPDPDVFETV-DFDFQTIYRR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            Q  A+L+  ++     ++   E+ G   +  FY+ GG+  +++    ++S I   +   
Sbjct: 59  LQEMAFLNRALRIHLLDERVAEEEDGRQREVTFYYEGGIADFVRHLNASKSPIHKTVVEF 118

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
           + E++G    ++E A+ W E     + ++ NTI T EGGTHE G R ALT  + +Y    
Sbjct: 119 EAEEEG---MSLEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSVVNRYGTDK 175

Query: 350 QNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
           +  +    +  +D+      I+SV +  P+F GQTKTKL +   +  V+    D    + 
Sbjct: 176 KLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWF 235

Query: 409 VQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
            +NP EA  ++ +           ++ ++   RK+ +    +PGKLADC       +E+F
Sbjct: 236 DRNPAEAKMIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVF 295

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
           IVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG
Sbjct: 296 IVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALG 349


>gi|13487307|gb|AAK27486.1|AF343323_1 DNA gyrase B [Cycloclasticus sp. NOP-122A]
 gi|13487317|gb|AAK27491.1|AF343328_1 DNA gyrase B [Cycloclasticus sp. N-221A]
 gi|13487319|gb|AAK27492.1|AF343329_1 DNA gyrase B [Cycloclasticus sp. N-231B]
 gi|13487321|gb|AAK27493.1|AF343330_1 DNA gyrase B [Cycloclasticus sp. P-211A2]
          Length = 362

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 128/366 (34%), Positives = 198/366 (54%), Gaps = 17/366 (4%)

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           + +G P+ PL+         G  + F+P    F +   F    L K  +  ++L+  V+ 
Sbjct: 9   YKKGEPVEPLKVVGPPEK-TGPSLRFKPSIGTFSNI-EFHFDLLAKRLRELSFLNSGVRI 66

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
             S ++   E       E F + GG+K ++    +N+S I   I     +K       VE
Sbjct: 67  RLSDERTAKE-------EIFEYEGGIKAFVNHLNKNKSQIHENIIYINVDKNDV---NVE 116

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISD 360
            A+ W +     I  Y N I   +GGTH +G R  LTR + +Y E +    K+ ++   D
Sbjct: 117 VALQWNDSYQENIFCYTNNIPQRDGGTHLAGFRAGLTRTLNQYIEGSGLAKKQKVTTSGD 176

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D       +LSV + +P+F+ QTK KLVS + +  VE++L +    +L++NP EA ++  
Sbjct: 177 DAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKSIVESSLAEALQEFLLENPTEAKEIAG 236

Query: 421 WVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
            ++E +  R   RK      RK+A+    LPGKLADC +     +E+F+VEGDSAGGSAK
Sbjct: 237 KMLEAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKDPALSEIFLVEGDSAGGSAK 296

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKV 538
           Q R+R  QA+LPL+GKILNV  A  +K+ ++ ++  L+ ALGC   + +Y+ E+LRY K+
Sbjct: 297 QGRDRRTQAILPLKGKILNVEKARFDKMLSSDEVGTLITALGCGIGKEEYKPENLRYHKI 356

Query: 539 IIMTDA 544
           IIMTDA
Sbjct: 357 IIMTDA 362


>gi|307343854|emb|CBJ19532.1| gyrase B subunit [Micromonospora sp. SGA3]
          Length = 358

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 103/361 (28%), Positives = 180/361 (49%), Gaps = 9/361 (2%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V + R   ++ Q+++   P    +   +  ++ G+ ++F PDP +F     FD   + + 
Sbjct: 2   VEIHRDGFVWRQQYNHSKPTPLEK--GEETDRTGSAVSFWPDPDVFETV-DFDFHTIYRR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            Q  A+L+  +      ++   ++ G   +  F++ GG+  +++    ++S I   +   
Sbjct: 59  LQEMAFLTRGLTIHLLDERVPEDEDGKTREVTFHYEGGIADFVRHLNASKSPIHKTVVEF 118

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             E+ G    +VE A+ W E     + ++ N I T EGGTHE G R ALT  + +Y    
Sbjct: 119 GAEETG---MSVEIAMQWNESYGESVYTFANNINTHEGGTHEEGFRAALTSVVNRYGAEK 175

Query: 350 QNKRAISI-ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
           +  +       +D+      I+SV + +P+F GQTKTKL +   +  V+    +    + 
Sbjct: 176 KLLKGDERLSGEDIREGLAAIISVKLTDPQFEGQTKTKLGNTPVKGFVQRVCNESLVDWF 235

Query: 409 VQNPIEATKLLE-WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
            +NP EA  +++            ++ ++   RK+ +    +PGKLADC       +E+F
Sbjct: 236 DRNPAEAKIIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVF 295

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           IVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG      
Sbjct: 296 IVEGDSAGGSAKQGRDPRVQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGIHDD 355

Query: 528 Y 528
           +
Sbjct: 356 F 356


>gi|239916542|gb|ACS34760.1| DNA gyrase subunit B [Gordonia neofelifaecis NRRL B-59395]
          Length = 406

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 120/412 (29%), Positives = 201/412 (48%), Gaps = 35/412 (8%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SV  ALS ++ + + R  +++ Q ++   P   LE   +  +  GT ++F  DPKIF 
Sbjct: 1   GVSVGTALSTKVDLEIKRNGSVWRQTYNNAEPTPLLE--GEAASGTGTSVSFWADPKIFE 58

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------------------- 258
               ++   + +  Q  A+L+  +    + ++                            
Sbjct: 59  TT-EYNIETIARRLQEMAFLNKGLTITLTDERVHEAVLEAEVEESEDGDASIKTEEQKAT 117

Query: 259 -----EKEEFYFPGGLKTYLQT-KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
                +   +++P GL  Y++     +++ I  +      + +G     VE A+ W E  
Sbjct: 118 AIAKVKTRTYHYPDGLIDYIKHLNSRSKAPIPQDGRRFTAKGEGH---EVEIAMQWNEGY 174

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369
              + ++ NTI T EGGTHE G R ALT  + +YA   +   ++   +  DD+      +
Sbjct: 175 AESVHTFANTINTAEGGTHEEGFRAALTSTVNRYAVDKKLIKEKDGKLSGDDIREGLAAV 234

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           +SV + +P+F GQTKTKL + + +  V+    +    +   NP EA  +++   +  + R
Sbjct: 235 ISVKVADPQFEGQTKTKLGNTEVKSFVQKTCNEHLAMWFDANPAEAKTIIKKAADSQQAR 294

Query: 430 LRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
           L  R+ RE V RKTA     LPGKLADC  N     E++IVEGDSAGGSAK  R+   QA
Sbjct: 295 LAARRARELVRRKTATDIGGLPGKLADCRSNDPSKCEVYIVEGDSAGGSAKSGRDSMYQA 354

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           +LPLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 ILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDIAKLRYHKIVL 406


>gi|213622293|ref|ZP_03375076.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 108

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 47/109 (43%), Positives = 68/109 (62%), Gaps = 1/109 (0%)

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
            DAD DG HIA+LL   F +    L++  H+++  PPL+RI  G +  YA  EE K  +L
Sbjct: 1   ADADSDGLHIATLLCALFVRHFRALVKNGHVYVALPPLYRIDLGKEVYYALTEEEKAGVL 60

Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
           E+ K+  KGK  + RFKGLGEM   QL+ET +D N R L+++ I+ + +
Sbjct: 61  EQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTISDEDD 108


>gi|148762479|dbj|BAF63941.1| DNA gyrase subunit B [Bacillus licheniformis]
          Length = 327

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 116/336 (34%), Positives = 178/336 (52%), Gaps = 13/336 (3%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG SVVNALS EL VTV R   +  Q+F RG+P + L+   +         
Sbjct: 1   YKVCGGLHGVGASVVNALSTELDVTVYRDGKVHYQEFERGVPKADLKVIGETEVTGT-TT 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PDP+IF +   +D   L    +  A+L+  VK      ++  E+        + + G
Sbjct: 60  HFKPDPEIFTETTEYDYDTLATRVRELAFLTKGVKITIEDKRDGKERKNE-----YCYEG 114

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K+Y++    +R ++  E    +  K G    TVE A+ + +     I S+ N I T E
Sbjct: 115 GIKSYVEHLNRSREVVHEEPVYIEGSKDGI---TVEVALQYNDSYTSNIYSFANNIHTYE 171

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTHE+G +  LTR I  YA       +   ++  +D+      I+S+   +P+F GQTK
Sbjct: 172 GGTHEAGFKTGLTRVINDYARRNGVFKESDPNLSGEDVREGLTAIISIKHPDPQFEGQTK 231

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTA 443
           TKL + +A+   +    +  + +L++NP  A K++E  V+        ++ +    RK+A
Sbjct: 232 TKLGNSEARTITDALFSEALEKFLLENPDSAKKIVEKGVMAARARMAAKKARELTRRKSA 291

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADCS      +EL+IVEGDSAGGSAK
Sbjct: 292 LEVSNLPGKLADCSSKDPTISELYIVEGDSAGGSAK 327


>gi|295979451|dbj|BAJ07398.1| DNA gyrase subunit B [Comamonas sp. MBIC 3276]
          Length = 267

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 87/273 (31%), Positives = 131/273 (47%), Gaps = 33/273 (12%)

Query: 101 LDGNGFLTVVDNGRGIPV-----ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155
           +  +G L+V+DNGRGIP      + H   P +S  EI LT LHAGGKF+ ++Y++SGGLH
Sbjct: 1   IHADGSLSVIDNGRGIPTRVKMDDKHE--PKRSAAEIALTELHAGGKFNQNSYKVSGGLH 58

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP-----------LEKKEKVRNKRG 204
           GVG+S VNALS  L + V R   ++   FSRG   +              +     +KRG
Sbjct: 59  GVGVSCVNALSIWLKLNVRRDGEVYEIDFSRGHVQNRPIEIVDGVEVSPMRVVGKSDKRG 118

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T++ F PD +IF     F    L K  +  ++L+  V+     +++  E         F 
Sbjct: 119 TKVHFLPDTEIFTQNHEFRYEILAKRLRELSFLNNGVRIRLKDERDGREDD-------FS 171

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT-------HRGTVEWAIAWCEEN-PEIT 316
             GG+  ++Q    N+ ++    F     +              VE A+ W +    ++ 
Sbjct: 172 GAGGVMGFVQFINANKKVLHPTAFHANGTRPAESYGGIPGTEIGVEVAMQWNDSYAEQVL 231

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            + N I   +GGTH +GLR A+TR I KY E  
Sbjct: 232 CFTNNIPQRDGGTHLTGLRAAMTRVIGKYIEQN 264


>gi|170177820|gb|ACB10236.1| GyrB [Aeromonas aquariorum]
          Length = 349

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 123/356 (34%), Positives = 191/356 (53%), Gaps = 16/356 (4%)

Query: 173 VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQ 232
           + R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K  +
Sbjct: 2   IXRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTL-FHYEILAKRLR 59

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   T
Sbjct: 60  ELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTT 112

Query: 293 EKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ- 350
           E+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +    
Sbjct: 113 EQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDY 169

Query: 351 -NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
             K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L+
Sbjct: 170 SKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLL 229

Query: 410 QNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFI 468
           +NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+I
Sbjct: 230 ENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYI 289

Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC  
Sbjct: 290 VEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGI 345


>gi|285026267|dbj|BAI67862.1| DNA gyrase B [Rubritalea spongiae]
          Length = 360

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 116/364 (31%), Positives = 182/364 (50%), Gaps = 18/364 (4%)

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDA 224
           SD     V R+  +    F RG    PLE   +   +K GT++TF PD  IF D   F+ 
Sbjct: 1   SDWFKAEVTREGKVHQIIFERGKTTQPLEVVGEAPSDKTGTKVTFFPDAAIFVDTINFEF 60

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
            RL    +   +L+  +      ++  +EK      E FY+  G++ ++    EN++ + 
Sbjct: 61  DRLATRLRELTFLNPGLTIVLEDERPESEKK-----ETFYYAKGIEEFVAQLSENKTTVH 115

Query: 285 SEIFTGKTEKKGTHRGT---------VEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
            E      +++                +    + +   +    Y N+I   +GGTH +G 
Sbjct: 116 EEPVVLTGKRQVEIDYDGKVVEDDVFADVVFQYNDSYQDNILCYANSIPNADGGTHLTGF 175

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR I +YA+  +    +  S+  DD+    V ++SV +  P F+ QTK KLV+ + 
Sbjct: 176 RGALTRSINQYAKANKILKDKDPSLSGDDVREGIVCVISVKMPNPRFSSQTKDKLVNAEI 235

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
           +  V + + +    Y  +NP  A ++++  +  +  R   RK RE  RK+ +    LPGK
Sbjct: 236 EGVVSSIVYEGLQAYFDENPNLAKQIIDKAVNAARAREAARKARETVRKSVMSGGGLPGK 295

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS+     +EL+IVEGDSAGGSAK  RNR NQA+LPLRGK++NV  A   K   N++
Sbjct: 296 LADCSERDPAKSELYIVEGDSAGGSAKSGRNRINQAILPLRGKVINVEKARLHKALQNKE 355

Query: 513 IMDL 516
           I  +
Sbjct: 356 IQAM 359


>gi|226327148|ref|ZP_03802666.1| hypothetical protein PROPEN_01013 [Proteus penneri ATCC 35198]
 gi|225204366|gb|EEG86720.1| hypothetical protein PROPEN_01013 [Proteus penneri ATCC 35198]
          Length = 172

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 74/167 (44%), Positives = 102/167 (61%), Gaps = 1/167 (0%)

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
                LPGKLADC+      TELF+VEGDSAGGSAKQAR+R  QA++PLRGKILN     
Sbjct: 6   TSGPALPGKLADCTSQDLRYTELFLVEGDSAGGSAKQARDREYQAIMPLRGKILNTWEVS 65

Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           S+++  +Q++ D+  A+G    S      LRY K+ I+ DAD DG HIA+LL   F +  
Sbjct: 66  SDEVLASQEVHDISVAIGMDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVRHF 124

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
             L+++ H+++  PPL+RI  G +  YA DE  K  IL+   +  + 
Sbjct: 125 PALVKEGHVYMAMPPLYRIDLGKEVHYALDESEKNAILQRLSRKKRK 171


>gi|218937737|gb|ACL13028.1| DNA gyrase subunit B [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 356

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 123/364 (33%), Positives = 193/364 (53%), Gaps = 13/364 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAG 221
           NALS +L+VTV R    +   F  G  +  L++   V   + GT + F PDP IF +   
Sbjct: 1   NALSTKLNVTVMRDGKKYHIAFDHGRVVEELKEVGTVPLTEHGTIVHFWPDPNIFTETTV 60

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L    +  A+L+  +K  ++  ++        E + ++F GG+K Y+      + 
Sbjct: 61  FDDKILKNRIRELAFLNKGLKLTFTDKRKD-----TAETDVYHFEGGIKEYVSFLNRGQE 115

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
           ++  E    + + +G     VE ++ +       + ++ N I T EGG HE+G + ALTR
Sbjct: 116 VLFDEPIYVEGKYEGI---DVEVSLQYTTGYKTTLMTFANNIHTYEGGMHEAGFKTALTR 172

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +  YA   +   +   ++  +D+      ++SV    P+F GQTKTKL + DA+  V+ 
Sbjct: 173 VVNDYAHKAKILKENDDNLSGEDIREGMTAVISVKHPNPQFEGQTKTKLGNSDARTAVDR 232

Query: 399 ALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
           A  + F  +L++NP  A K++E   +        +R +    +K+ +    LPGKLAD +
Sbjct: 233 AFSETFSTFLMENPQVARKIVEKGQLAERARVAAKRAREVTRKKSGLEIANLPGKLADNT 292

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
            N  + +ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I  NQ+I  L 
Sbjct: 293 SNDPNXSELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQEIRTLF 352

Query: 518 QALG 521
            ALG
Sbjct: 353 TALG 356


>gi|110225020|dbj|BAE97499.1| DNA gyrase subunit B [Streptococcus sobrinus]
          Length = 300

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 101/302 (33%), Positives = 157/302 (51%), Gaps = 12/302 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS  L V V +   I  Q++ RG+  + L+      +K G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTSLEVKVHKNGKIHFQEYKRGMVAADLKVIGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PDP+IF +   FD  +L K  Q  A+L+  +K   +  +E  E     + + ++
Sbjct: 60  TSVHFTPDPEIFTETTEFDFDKLAKRIQELAFLNKGLKISITDKREGKE-----QNQVYH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+ +Y+    EN+ ++         E  G    +VE A+ +     E   S+ N I 
Sbjct: 115 YEGGIVSYVDYLNENKEVLFERPIYTDGEMDGI---SVEVAMQYTGTYHENVLSFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G R ALTR I  YA   +   ++  ++  +D+      I+SV    P+F G
Sbjct: 172 THEGGTHEQGFRTALTRVINDYARQNKLLKEKDDNLSGEDVREGLTAIISVKHPNPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + +  +       + F  +L++NP  A K++E  I  S+ R+  ++ REV RK
Sbjct: 232 QTKTKLGNSEVVKITNRLFSEAFFRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRK 291

Query: 442 TA 443
            +
Sbjct: 292 KS 293


>gi|106895912|gb|ABE96851.1| DNA gyrase subunit B [Aeromonas sp. MDC64]
          Length = 337

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 118/348 (33%), Positives = 188/348 (54%), Gaps = 15/348 (4%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           +T+ R   ++ Q +  G P +PL++     +  GT + F P P IF D   +    L K 
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTL-YHYEILAKR 59

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F  
Sbjct: 60  LRELSFLNSGVSIRLEDERDGRE-------MHFCYEGGIKAFVEYLNQNKTPIHPKVFHF 112

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +  
Sbjct: 113 STEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKE 169

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +
Sbjct: 170 DYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLSEF 229

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
           L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL
Sbjct: 230 LLENPSDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSEL 289

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           +IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++ 
Sbjct: 290 YIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVG 337


>gi|89143194|emb|CAJ57494.1| DNA gyrase subunit B [Microbacterium lacticum]
          Length = 370

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 113/370 (30%), Positives = 180/370 (48%), Gaps = 15/370 (4%)

Query: 173 VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQ 232
           + RQ  ++ Q F+ G        + +   + GT ITF PD +IF     FD   L    Q
Sbjct: 1   IRRQGFVWRQSFAGGGKPQAPLAQGEETVETGTVITFWPDAEIFETV-DFDYDTLRTRFQ 59

Query: 233 SKAYLSGRVKTCWSC---------DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
             A+L+  ++   S          D E  +       +EF++  GL  Y++   + R   
Sbjct: 60  QTAFLNKGLRITLSDLRPSSAYVVDTEDGQSVERQPHDEFHYERGLVDYVEYLNKIRKAD 119

Query: 284 SSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
                  + E +      ++E A+ W       + ++ NTI T EGGTHE G R A+T  
Sbjct: 120 VVNDEIIEVEAEDTVRHISLELAMQWTTSYTENVFTFANTINTHEGGTHEEGFRAAMTTY 179

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I KYA       ++  ++  DD+      ++SV + EP+F GQTKTKL + +A+  V+  
Sbjct: 180 INKYAREKGLLKEKDDNLTGDDIREGLTAVISVKLSEPQFEGQTKTKLGNTEAKAFVQKV 239

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458
           + D    +L +NP++A +++   ++ +  RL  RK RE  R+ +      +P KL DC+ 
Sbjct: 240 VGDQLTDWLDRNPVQAKRVIMKAVDAATARLAARKARETARRKSVFESASMPEKLKDCTS 299

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+F+VEGDSAGGSA   R+   QA+L LRGKILNV  A  ++   N +I  ++ 
Sbjct: 300 KDPSISEIFLVEGDSAGGSAVSGRDPERQAILSLRGKILNVEKARLDRALGNTEIQAMIS 359

Query: 519 ALGCRTRSQY 528
           A G      +
Sbjct: 360 AFGTGIGEDF 369


>gi|307343810|emb|CBJ19510.1| gyrase B subunit [Micromonospora sp. GUI23]
          Length = 350

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 105/355 (29%), Positives = 183/355 (51%), Gaps = 9/355 (2%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V + +  +++ Q ++   P    +   +  ++ G+ ++F PDP +F     FD   + + 
Sbjct: 2   VEIHKSGSVWRQHYTNSKPGPLEK--GETTDRTGSAVSFWPDPDVFETV-DFDFQTIYRR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            Q  A+L+  ++     ++   E+ G   +  FY+ GG+  +++    ++S I   +   
Sbjct: 59  LQEMAFLNRALRIHLLDERVAEEEDGRQREVTFYYEGGIADFVRHLNASKSPIHKTVVEF 118

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
           + E++G    ++E A+ W E     + ++ NTI T EGGTHE G R ALT  + +Y    
Sbjct: 119 EAEEEG---MSLEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSVVNRYGTDK 175

Query: 350 QNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
           +  +    +  +D+      I+SV +  P+F GQTKTKL +   +  V+    D    + 
Sbjct: 176 KLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWF 235

Query: 409 VQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
            +NP EA  ++ +           ++ ++   RK+ +    +PGKLADC       +E+F
Sbjct: 236 DRNPAEAKMIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVF 295

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           IVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG 
Sbjct: 296 IVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGT 350


>gi|328472404|gb|EGF43271.1| DNA gyrase subunit B [Lactobacillus rhamnosus MTCC 5462]
          Length = 162

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 72/162 (44%), Positives = 96/162 (59%), Gaps = 2/162 (1%)

Query: 75  HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134
           HHL  E+IDN +DE +AG+A  IEV ++ +  +TV D+GRGIPV+   K   +  LE + 
Sbjct: 2   HHLVWEIIDNGIDEALAGFATRIEVEVNPDNSVTVTDDGRGIPVDIQAK-TGRPALETVY 60

Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194
           T LHAGGKF    Y++SGGLHGVG SVVNALS  L VTV R    +   F RG   +P++
Sbjct: 61  TVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTNLDVTVVRGGKRYYIDFVRGKVNTPMK 120

Query: 195 KKEKVRNK-RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +         GT++ F+PDP IF +   FD   L    +  A
Sbjct: 121 ELGPAPEHEHGTKVHFQPDPDIFTETTTFDDKVLTTRIRELA 162


>gi|195926962|dbj|BAG68368.1| gyrase B [Campylobacter showae]
          Length = 339

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 125/353 (35%), Positives = 189/353 (53%), Gaps = 18/353 (5%)

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L V + R   +  Q+FS+GIP S LE  +   N+ GT++ F PD  IF    
Sbjct: 1   VVNALSKKLVVNIKRDGKLHRQEFSKGIPQSDLEVIKNT-NRTGTQVEFWPDDSIFEVT- 58

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   L K  +  AYL+ ++   +   +          KE F++ GGL++++    +N 
Sbjct: 59  EFDDEILTKRFRELAYLNPKITINFKDQR-------NGRKESFHYEGGLESFVTDLNKNE 111

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALT 339
           ++  +  F+G     G     V++A+ + +   E   S+ N I T +GGTHE+G R  LT
Sbjct: 112 AVSKAVSFSG-----GEEDVLVDFALMYNDTYSENLLSFVNNIKTPDGGTHEAGFRAGLT 166

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y        ++   I  +D+    + ++SV + EP+F GQTK KL S   +  V+
Sbjct: 167 RVITNYIAANAAAREKDTKITGEDIREGLIAVISVKVPEPQFEGQTKGKLGSSYVKPIVQ 226

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
             + +    Y  +NPIEA  ++E  +  +  R   +K R+   +K  +    LPGKLADC
Sbjct: 227 KMVFEVLSKYFEENPIEARAIMEKALMAARGREAAKKARDLTRKKEGLSIGTLPGKLADC 286

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
                  +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  +  +KI  
Sbjct: 287 QSKDPTISELYLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSRLDKILK 339


>gi|294337976|emb|CBJ93814.1| Putative phage DNA topoisomerase (large subunit) [Campylobacter
           phage CP220]
          Length = 503

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 94/528 (17%), Positives = 177/528 (33%), Gaps = 75/528 (14%)

Query: 49  IRILEGLEPVRMRPGMYIGGTDE---------------------KALHHLFSEVIDNAMD 87
           I+ L   E +  RP MYIG  D                        L  + +E+IDN++D
Sbjct: 2   IKKLTDREHILKRPSMYIGAIDSTNTEDFIIESGKIKYTTLNYVPGLIKIINEIIDNSVD 61

Query: 88  EVIA---GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144
             I         I V +  +  +++ D+G GIPV    K  +    E+      AG  FD
Sbjct: 62  AAIRSKFKSGLNISVKISND-TVSIEDDGTGIPV---IKSGDHYMPELAWNHAKAGSNFD 117

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +    ++ G +GVG    N  S             +  K           +  +   K G
Sbjct: 118 DDANRVTIGTNGVGSYCTNVWSINFKGITDDGKNRYIFKSKNN--AETYSENIEASKKSG 175

Query: 205 TRITFRPDPKIFG--DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
           T + F+PD + F   +        + +   + A     +   ++  K             
Sbjct: 176 TLVEFKPDLERFNLKEIDETHKNIIYQRLLNLAICYPEINFKFNSKKI------------ 223

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
                  K YL     +  L  ++       K G     ++        + +  S+ N +
Sbjct: 224 --DFKSFKNYLNMFSSDFELYENQNI-----KIGIIPNELD--------DFKQFSFVNGL 268

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
              +GG H   +   + +GI+        K       D      +      +   +F  Q
Sbjct: 269 KIPDGGVHIDTIMSNVVQGIRDKLV---KKYKSIKPGDIKNKLMIVCFINGMPNLKFNSQ 325

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           +K K+ +   +    + +   F + +++N      +++ +I+  + +      + +    
Sbjct: 326 SKEKITNSVKEFNDFSNIDYNFINKILKN----KSIIDPIIDIYKVKEALNADKALKSVE 381

Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
             +KL+                 L I EG SA G   Q     + +   L+GK LN    
Sbjct: 382 KSKKLKSEKYFRATKSQKY----LCICEGFSAYGGISQVLGNEHTSFYVLKGKPLNSWDV 437

Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY-----EKVIIMTDAD 545
            ++K   N+++ +L Q L      +  ++   Y      K  IM + D
Sbjct: 438 TNQKFAANRELSELYQILSENAEFEDLKDGKFYEIKIDGKTYIMNEND 485


>gi|205363010|gb|ACI03946.1| DNA gyrase subunit B [Aliivibrio fischeri]
          Length = 351

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 122/361 (33%), Positives = 193/361 (53%), Gaps = 14/361 (3%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS+++ +T+ R   I  Q +  G P +PL    K  +  GT+I F P  + F +   F 
Sbjct: 1   ALSEKVELTIHRAGEIHQQVYHHGEPEAPLAVIGKT-DTTGTKIRFWPSEETFTNVV-FV 58

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L K  +  ++L+  V       +E        + + F + GG++ ++Q    N++ I
Sbjct: 59  YEILAKRLRELSFLNSGVSIKLQDMRE------EDKADHFMYEGGIQAFVQHLNRNKTPI 112

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
             ++F   +E++     +VE ++ W +     I  + N I   +GGTH +G R ALTR +
Sbjct: 113 HQKVFHFDSERED--GISVEVSMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSALTRTL 170

Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE+A+
Sbjct: 171 NTFMDKEGFSKKAKAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAM 230

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQN 459
            +    +L +NP EA  +   +I+ +  R   RK R    RK A+    LPGKLADC + 
Sbjct: 231 GEKLSEFLAENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 290

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
               +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ A
Sbjct: 291 DPGLSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 350

Query: 520 L 520
           L
Sbjct: 351 L 351


>gi|207107920|dbj|BAG71972.1| DNA gyrase subunit B [Gordonia sihwensis]
          Length = 405

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 122/410 (29%), Positives = 197/410 (48%), Gaps = 33/410 (8%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           ISVVNALS ++ + + R  +++ Q ++   P   +E   +  +  GT ++F  D KIF  
Sbjct: 1   ISVVNALSTQVELEIKRNGSVWRQTYTNAEPGPLVE--GEAASGTGTSVSFWADGKIFET 58

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG---------------------- 256
              ++   + +  Q  A+L+  +    + ++                             
Sbjct: 59  T-EYNIETIARRLQEMAFLNKGLTITLTDERVHEAVLEAEVEESEDGDASIKTEEQKATA 117

Query: 257 --IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313
               +   +++P GL  Y++           +   G T K   H   VE A+ W E    
Sbjct: 118 IAKVKTRTYHYPDGLIDYIKHLNSRTKAPIHKTVVGFTAKGEGHE--VEIAMQWNEGYAE 175

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
            + ++ NTI T EGGTHE G R ALT  + +YA   +   ++   +  DD+      ++S
Sbjct: 176 SVHTFANTINTAEGGTHEEGFRAALTSTVNRYAIDKKLIKEKDGKLSGDDIREGLAAVIS 235

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V + +P+F GQTKTKL + + +  V+    +    +   NP EA  ++    +  + RL 
Sbjct: 236 VKVADPQFEGQTKTKLGNTEVKSFVQKTCNEHLAMWFDANPAEAKTIIRKAADSQQARLA 295

Query: 432 RRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
            R+ RE V RKTA     LPGKLADC  N     E++IVEGDSAGGSAK  R+   QA+L
Sbjct: 296 ARRARELVRRKTATDIGGLPGKLADCRSNDPSKCEVYIVEGDSAGGSAKSGRDSMYQAIL 355

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           PLRGKI+NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 356 PLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDISKLRYHKIVL 405


>gi|110224958|dbj|BAE97468.1| DNA gyrase subunit B [Streptococcus criceti]
          Length = 300

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 100/302 (33%), Positives = 159/302 (52%), Gaps = 12/302 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS  L V V +   I  Q++ RG+ ++ L+      +K G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTSLEVKVHKNGKIHFQEYKRGLVVADLKVIGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PDP+IF +   FD  +L K  Q  A+L+  +K   +  +E  E     + + ++
Sbjct: 60  TSVHFTPDPEIFTETTEFDFDKLAKRIQELAFLNKGLKISITDKREGKE-----QSQVYH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+ +Y+    EN+ ++  +      E  G    +VE A+ +     E   S+ N I 
Sbjct: 115 YEGGIVSYVDYLNENKEVLFDQPIYTDGEMDGI---SVEVAMQYTGTYHENVLSFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G R ALTR I  YA   +   ++  ++  +D+      I+SV    P+F G
Sbjct: 172 THEGGTHEQGFRTALTRVINDYARQNKLLKEKDDNLSGEDVREGLTAIISVKHPNPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + +  +       + F  +L++NP  A K++E  +  S+ R+  ++ REV RK
Sbjct: 232 QTKTKLGNSEVVKITNRLFSEAFSRFLLENPQIAKKIVEKGVLASKARIAAKRAREVTRK 291

Query: 442 TA 443
            +
Sbjct: 292 KS 293


>gi|213024496|ref|ZP_03338943.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 310

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 115/310 (37%), Positives = 169/310 (54%), Gaps = 9/310 (2%)

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSY 318
           + + +  GL  YL   +     +  + F G    +      V+WA+ W  E  E    SY
Sbjct: 7   QRWCYQDGLNDYLGEAVNGLPTLPEKPFIGNFNGETE---AVDWALLWLPEGGELLTESY 63

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREP 377
            N I T +GGTH +GLR  L   ++++ E      R + + ++D+      +LSV +++P
Sbjct: 64  VNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDP 123

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +FAGQTK +L S      V   ++D F  +L QN   A +L E  I  ++ RLR    ++
Sbjct: 124 QFAGQTKERLSSRQCAAFVSGVVKDAFSLWLNQNVQAAEQLAEMAIASAQRRLR--AAKK 181

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
           V RK       LPGKLADC+    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GKIL
Sbjct: 182 VVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKIL 241

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557
           N     S+++  +Q++ D+  A+G    S      LRY K+ I+ DAD DG HIA+LL  
Sbjct: 242 NTWEVSSDEVLASQEVHDISVAIGIDPDSDD-LSQLRYGKICILADADSDGLHIATLLCA 300

Query: 558 FFYQEMYDLI 567
            F +    L+
Sbjct: 301 LFVRHFRALV 310


>gi|62944558|gb|AAY22127.1| DNA gyrase subunit B [Zymomonas mobilis subsp. francensis]
          Length = 348

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 112/358 (31%), Positives = 190/358 (53%), Gaps = 14/358 (3%)

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS+ L +TV R       +F  G+ + PL+      +KRGTR+ F P    F   
Sbjct: 1   SVVNALSNYLELTVWRDGYEHRMRFEHGVAVEPLQVVGP-SDKRGTRVRFLPSEATFK-I 58

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
             F+  +L    +  A+L+  V+   +  +   EK         Y+ GG+  +++     
Sbjct: 59  TEFNFEKLEHRYRELAFLNSGVRLQLTDKRPDPEKTVE-----LYYEGGIAAFVKWLDRA 113

Query: 280 RSLISSEIFTGKTEKKGT-HRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
           ++ +  E      ++        +EW  ++     ++  + N I   +GGTH +  R AL
Sbjct: 114 KTALIPEPVAIHGDRDDVVIDVALEWNDSY---YEQVLCFTNNIPQRDGGTHLAAFRAAL 170

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           TR +  YA+ +    K  + +  DD+      I+SV + +P+F+ QTK KLVS + ++ +
Sbjct: 171 TRTLNNYADKSGLLKKEKVQLTGDDMREGLTAIISVKLPDPKFSSQTKDKLVSSEVRQPL 230

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLAD 455
           E+ + D    +L +NP  A  +++ +I+ +  R   ++ RE+ R+   +    LPGKLAD
Sbjct: 231 ESLMADKMAEWLEENPAHAKVIIQKIIDAAAAREAAKRARELTRRKGVMDIASLPGKLAD 290

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           C +     +E+FIVEGDSAGGSAKQ RNR NQA+LPL+GKILN   +  +++ +++++
Sbjct: 291 CQERDPTKSEIFIVEGDSAGGSAKQGRNRHNQAILPLKGKILNTERSRLDRMLSSKEV 348


>gi|318066843|emb|CBY89133.1| DNA gyrase subunit B [Halomonas halmophila]
          Length = 349

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 123/360 (34%), Positives = 189/360 (52%), Gaps = 16/360 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +T+ RQ  +  Q +  G+  SPL        + G+R+ FRP  + F +
Sbjct: 1   VSVVNALSEELKLTIWRQGQVHEQVYRHGVAESPLSVVG-TTEQSGSRVHFRPSTETFHN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V    + ++   E       E F++ GGL+ ++     
Sbjct: 60  I-EFHYDVLAKRLRELSFLNSGVAIRLTDERSGKE-------ELFHYEGGLRAFVDHLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N+++++         + G     VE A+ W +     I  Y N I   +GGTH +G R +
Sbjct: 112 NKTVLNPVFHFNVEREDGV---GVEVAMQWNDTFAENIFCYTNNIPQGDGGTHLAGFRAS 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  +S   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRTLNHYIEAEGLLKKAKVSTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  +   F  YLV+ P EA  ++  +++ +  R   RK      RK A+    LPGKLA
Sbjct: 229 VEQEMGRQFSDYLVERPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLA 288

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 289 DCQEKDPSLSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 348


>gi|110224976|dbj|BAE97477.1| DNA gyrase subunit B [Streptococcus gallolyticus]
          Length = 300

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 100/302 (33%), Positives = 160/302 (52%), Gaps = 12/302 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS +L V+V R   I  Q++ RG  +S L       ++ G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVSVHRNGKIHYQEYRRGHVVSDLAVIGDT-DRHG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PDP+IF +   FD  +L K  Q  A+L+  ++   +  +E  E     +++ ++
Sbjct: 60  TTVHFTPDPEIFTETTVFDFDKLAKRIQELAFLNRGLRISITDKREGIE-----QEKHYH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+ +Y++   EN+ +I         E  G    +VE A+ +       + S+ N I 
Sbjct: 115 YEGGISSYVEFINENKEVIFENPIYTDGELDGI---SVEVAMQYTTSYHETVMSFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G R ALTR I  YA   +   ++  ++  +D+      ++SV    P+F G
Sbjct: 172 THEGGTHEQGFRTALTRVINDYARQNKLLKEKDDNLTGEDVREGLTAVISVKHPNPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + +  +       + F  +L++NP  A K++E  I  S+ R+  ++ REV RK
Sbjct: 232 QTKTKLGNSEVVKITNRLFSEAFSRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRK 291

Query: 442 TA 443
            +
Sbjct: 292 KS 293


>gi|307343802|emb|CBJ19506.1| gyrase B subunit [Micromonospora sp. GUI13]
          Length = 345

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 101/349 (28%), Positives = 176/349 (50%), Gaps = 9/349 (2%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V + +   ++ Q++    P    +   +  ++ G+ ++F PDP +F     FD   + + 
Sbjct: 2   VEIHKSGFVWRQQYHNSKPGPLDK--GETTDRTGSAVSFWPDPDVFETV-DFDFQTIYRR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            Q  A+L+  ++     ++   E+ G   +  F + GG+  +++    +++ I   +   
Sbjct: 59  LQEMAFLNRALRIHLLDERVAEEEDGRQREVTFLYEGGIADFVRHLNASKNPIHKTVVEF 118

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             E++G    +VE A+ W E     + ++ NTI T EGGTHE G R ALT  + +Y    
Sbjct: 119 GAEEEG---MSVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSVVNRYGTDK 175

Query: 350 QNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
           +  +    +  +D+      I+SV +  P+F GQTKTKL +   +  V+    +    + 
Sbjct: 176 KLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNEWLVDWF 235

Query: 409 VQNPIEATKLLE-WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
            +NP EA  +++            ++ ++   RK+ +    +PGKLADC       +E+F
Sbjct: 236 DRNPAEAKMIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVF 295

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           IVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N +I  L
Sbjct: 296 IVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEIQAL 344


>gi|285026269|dbj|BAI67863.1| DNA gyrase B [Rubritalea marina]
          Length = 360

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 112/364 (30%), Positives = 180/364 (49%), Gaps = 18/364 (4%)

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDA 224
           SD     V R + +    F RG     LE       +K GT++TF PD  IF D   F+ 
Sbjct: 1   SDWFKAEVTRDSKVHQITFERGKTTQQLEVVGDAPSDKTGTKVTFFPDATIFVDTITFEF 60

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
            RL    +   +L+  +      ++  +EK      E FY+  G++ ++    E+++ + 
Sbjct: 61  DRLATRLRELTFLNPGLTIVLEDERPESEKK-----ETFYYAKGIEEFVAQLSESKTTVH 115

Query: 285 SEIFTGKTEKKGTHRGT---------VEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
            E      +++                +    + +   +    Y N+I   +GG H +G 
Sbjct: 116 EEPVVLNGKRQVEIDYDGKVMEDDVFADVVFQYNDSYQDNILCYANSIPNADGGAHLTGF 175

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR I +YA++ +    +  S+  DD+    V ++SV +  P F+ QTK KLV+ + 
Sbjct: 176 RGALTRSINQYAKVNKILKDKDPSLSGDDVREGIVCVISVKMPNPRFSSQTKDKLVNAEI 235

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
           +  V + + +    Y  +NP  A ++++  +  +  R   RK RE  RK+ +    LPGK
Sbjct: 236 EGVVSSIVYEGLQEYFDENPNLAKQIIDKAVNAARAREAARKARETVRKSVMSGGGLPGK 295

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS+     +E++IVEGDSAGGSAK  RNR NQA+LPLRGK++NV  A   K   N++
Sbjct: 296 LADCSERDPAKSEIYIVEGDSAGGSAKSGRNRINQAILPLRGKVINVEKARLHKALQNKE 355

Query: 513 IMDL 516
           I  +
Sbjct: 356 IQAM 359


>gi|111182884|gb|ABH07787.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Gallinarum]
 gi|154243309|gb|ABS71827.1| gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Gallinarum]
 gi|154243311|gb|ABS71828.1| gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Gallinarum]
 gi|154243313|gb|ABS71829.1| gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Gallinarum]
 gi|154243315|gb|ABS71830.1| gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 173

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 79/153 (51%), Positives = 112/153 (73%), Gaps = 1/153 (0%)

Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKI
Sbjct: 21  MTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI 80

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLL 555
           LNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LL
Sbjct: 81  LNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLL 140

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKS 588
           LTFFY++M +++E+ H+++  PPL+++ +G + 
Sbjct: 141 LTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQE 173


>gi|109842718|gb|ABG02286.2| gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 173

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 79/153 (51%), Positives = 112/153 (73%), Gaps = 1/153 (0%)

Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKI
Sbjct: 21  MTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI 80

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLL 555
           LNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LL
Sbjct: 81  LNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLL 140

Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKS 588
           LTFFY++M +++E+ H+++  PPL+++ +G + 
Sbjct: 141 LTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQE 173


>gi|110224972|dbj|BAE97475.1| DNA gyrase subunit B [Streptococcus gallolyticus]
          Length = 300

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 100/302 (33%), Positives = 161/302 (53%), Gaps = 12/302 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS +L V+V R   I+ Q++ RG  +S L       ++ G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVSVHRNGKIYYQEYRRGHVVSDLAVIGDT-DRHG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PDP+IF +   FD  +L K  Q  A+L+  ++   +  +E  E     +++ ++
Sbjct: 60  TTVHFTPDPEIFTETTVFDFDKLAKRIQELAFLNRGLRISITDKREGIE-----QEKHYH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+ +Y++   EN+ +I         E  G    +VE A+ +       + S+ N I 
Sbjct: 115 YEGGISSYVEFINENKEVIFENPIYTDGELDGI---SVEVAMQYTTSYHETVMSFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G R ALTR I  YA   +   ++  ++  +D+      ++SV    P+F G
Sbjct: 172 THEGGTHEQGFRTALTRVINDYARQNKLLKEKDDNLTGEDVREGLTAVISVKHPNPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + +  +       + F  +L++NP  A K++E  I  S+ R+  ++ REV RK
Sbjct: 232 QTKTKLGNSEVVKITNRLFSEAFSRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRK 291

Query: 442 TA 443
            +
Sbjct: 292 KS 293


>gi|51571557|emb|CAH18945.1| gyrase B [Corallococcus coralloides]
          Length = 349

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 117/353 (33%), Positives = 182/353 (51%), Gaps = 16/353 (4%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           N LS+   V V R   ++ Q ++RG+   P ++     +KRGT I F+PDP +      F
Sbjct: 1   NFLSEWFKVRVQRAGKVYEQSYARGVSNGPPQEAG-TTDKRGTTIHFKPDPTVMETV-DF 58

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L +  +  A+L+  +      ++   E         F F GG+ ++++   + +  
Sbjct: 59  NFETLSQRLRELAFLNAGLHITIRDERTQKEHD-------FKFDGGISSFVEYLNKAKEA 111

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +  +    K+E++G    ++E A+ W +     I ++ N I T EGG+H SG + ALTR 
Sbjct: 112 LHDKPVYIKSEREGV---SLEIAMQWNDGYDERIFTFANNINTHEGGSHLSGFKAALTRT 168

Query: 342 IKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +  YAE     + +      +D       ++SV +  P+F GQTKTKL + + +  VE  
Sbjct: 169 LNSYAEKGGLWKDLKETPTGEDAREGLSAVISVKLSNPQFEGQTKTKLGNSEVKGLVEQM 228

Query: 400 LRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
           + D    +L +NP  A K++  +          R+ +  V RK  +    LPGKLADC  
Sbjct: 229 VNDQLASFLEENPPLAKKVVVKIGDACRARIAARKARETVRRKGVLDGGGLPGKLADCQS 288

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
              H +EL+IVEGDSAGGSAKQ R+R NQA+LPLRGKILNV  A  EK+  + 
Sbjct: 289 RDPHESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTSA 341


>gi|148762483|dbj|BAF63943.1| DNA gyrase subunit B [Bacillus licheniformis]
          Length = 327

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 116/336 (34%), Positives = 178/336 (52%), Gaps = 13/336 (3%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG SVVNALS EL VTV R   +  Q+F RG+P + L+   +         
Sbjct: 1   YKVFGGLHGVGASVVNALSTELDVTVYRDGKVHYQEFERGVPKADLKVIGETEVTGT-TT 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PDP+IF +   +D   L    +  A+L+  VK      ++  E+        + + G
Sbjct: 60  HFKPDPEIFTETTEYDYDTLATRVRELAFLTKGVKITIEDKRDGKERKNE-----YCYEG 114

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K+Y++    +R ++  E    +  K G    TVE A+ + +     I S+ N I T E
Sbjct: 115 GIKSYVEHLNRSREVVHEEPVYIEGSKDGI---TVEVALQYNDSYTSNIYSFANNIHTYE 171

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTHE+G +  LTR I  YA       +   ++  +D+      I+S+   +P+F GQTK
Sbjct: 172 GGTHEAGFKTGLTRVINDYARRNGVFKESDPNLSGEDVREGLTAIISIKHPDPQFEGQTK 231

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTA 443
           TKL + +A+   +    +  + +L++NP  A K++E  V+        ++ +    RK+A
Sbjct: 232 TKLGNSEARTITDALFSEALEKFLLENPDSAKKIVEKGVMAARARMAAKKARELTRRKSA 291

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADCS      +EL+IVEGDSAGGSAK
Sbjct: 292 LEVSNLPGKLADCSSKDPTISELYIVEGDSAGGSAK 327


>gi|218937733|gb|ACL13026.1| DNA gyrase subunit B [Lactobacillus delbrueckii subsp. bulgaricus]
          Length = 356

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 124/364 (34%), Positives = 192/364 (52%), Gaps = 13/364 (3%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAG 221
           NALS +L+VTV R    +   F  G  +  L++   V   + GT + F PDP IF +   
Sbjct: 1   NALSTKLNVTVMRDGKKYYIAFDHGRVVEELKEVGTVPLTEHGTIVHFWPDPNIFTETTV 60

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L    +  A+L+  +K  ++  ++        E   ++F GG+K Y+      + 
Sbjct: 61  FDDKILKNRIRELAFLNKGLKLTFTDKRKD-----TAETYVYHFEGGIKEYVSFLNRGQE 115

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
           ++  E    + + +G     VE ++ +       + ++ N I T EGG HE+G + ALTR
Sbjct: 116 VLFDEPIYVEGKYEGI---DVEVSLQYTTGYKTTLMTFANNIHTYEGGMHEAGFKTALTR 172

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  YA   +   +   ++  +D+      ++SV    P+F GQTKTKL + DA+  V+ 
Sbjct: 173 VINDYAHKAKILKENDDNLSGEDIREGMTAVISVKHPSPQFEGQTKTKLGNSDARTAVDR 232

Query: 399 ALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
           A  + F  +L++NP  A K++E   +        +R +    +K+ +    LPGKLAD +
Sbjct: 233 AFSETFSTFLMENPQVARKIVEKGQLAERARVAAKRAREVTRKKSGLEIANLPGKLADNT 292

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517
            N  + +ELFIVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I  NQ+I  L 
Sbjct: 293 SNDPNXSELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQEIRTLF 352

Query: 518 QALG 521
            ALG
Sbjct: 353 TALG 356


>gi|219944506|gb|ACL55027.1| DNA gyrase B subunit [Dietzia maris]
          Length = 444

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 128/444 (28%), Positives = 194/444 (43%), Gaps = 59/444 (13%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD+ +Y +SGGLHGVGISVVNALS  + V + R   ++ Q F   +P   ++      
Sbjct: 1   GKFDSDSYAVSGGLHGVGISVVNALSTRVEVQIKRDGRLWKQDFDMAVPAELVDA--GPA 58

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK------ 254
              GTR+ F  DP IF     ++   + +  Q  A+L+  +    +  +  AEK      
Sbjct: 59  EGTGTRVRFWADPTIFES-TEYEFDVVARRLQEMAFLNKGLTITLTDRRPRAEKAAELDA 117

Query: 255 ---------------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
                                    + E+ +  G  +T          +   E       
Sbjct: 118 IADSEGTGAEAAPGSDEGSDLAHAVDAEQVFVEGAQETDAVEVTPAEPVKVRERKRTFHY 177

Query: 294 KKGTHRGTVEWAIAWCEENPEITS-------------------YCNTILTDEGGT----- 329
             G          +    +P I                     Y  ++ T          
Sbjct: 178 PDGLKDYVTAINKSKTSIHPTILYFEGKGPGHEVEVAMQWNSGYSESVHTFANTINTHEG 237

Query: 330 --HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
             HE G R ALT  + KYA   +   ++  ++  DD+      +LS  I +P+F GQTKT
Sbjct: 238 GTHEEGFRAALTSLVNKYAREKKLIKEKDPNLTGDDIREGLAAVLSAKISDPQFEGQTKT 297

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAI 444
           KL + + +  V+  + +   H+   NP EA  ++   I  S+ R+  RK RE+  RK+A 
Sbjct: 298 KLGNTEVKGFVQRQVSEHVGHWFEANPAEAKVIINKAIASSQARVAARKAREMVRRKSAT 357

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC       +EL+IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  +  
Sbjct: 358 DIGGLPGKLADCRSKDPAKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKSRI 417

Query: 505 EKIRNNQQIMDLVQALGCRTRSQY 528
           +K+  N ++  ++ ALG     ++
Sbjct: 418 DKVLKNAEVQAIITALGTGIHEEF 441


>gi|170178308|gb|ACB10201.1| DNA gyrase subunit B [Kribbella yunnanensis]
          Length = 369

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 124/369 (33%), Positives = 191/369 (51%), Gaps = 7/369 (1%)

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT ITF P   +F     +    L    +  A+L+  ++     ++    + G P ++ F
Sbjct: 3   GTTITFWPSADVFETTV-YSYETLTTRFREYAFLNKGLELVIRDERPDHTEDGNPVEQSF 61

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            +  GL  Y++     R  +  ++   +  +      ++E A+ W       + ++ NTI
Sbjct: 62  KYDAGLVDYVKYLTGIRETVHRDVIAFEAAQADN-SLSLEVAMQWSGSFQESVHTFANTI 120

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
            T EGGTHE G R ALT  +  + E      K+   +  DD+      I+SV +  P+F 
Sbjct: 121 NTHEGGTHEEGFRAALTSLVNSFGEDQGMIKKKEDRLTGDDIREGLTAIISVKLGNPQFE 180

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE--V 438
           GQTKTKL + + +  V+  + D    +  QNP E  +++      +  R+  RK R+   
Sbjct: 181 GQTKTKLGNTEVKGFVQRVVNDRLGAWFEQNPQEGREIIRKATAAASARIAARKARDLAR 240

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
           NRK  +    LPGKL+DC        E++IVEGDSAGGSAK  R+   QA+LP+RGKILN
Sbjct: 241 NRKGLLGGGGLPGKLSDCQSTNPEECEVYIVEGDSAGGSAKGGRDPKYQAILPIRGKILN 300

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
           V  A  +++  N +++ ++ ALG      + EE LRY K++IM DADVDG HI +LLLT 
Sbjct: 301 VEKARIDRVLQNNEVLAIISALGTGIHEDFDEEKLRYHKIVIMADADVDGQHIRTLLLTL 360

Query: 559 FYQEMYDLI 567
            ++ M  LI
Sbjct: 361 LFRFMRPLI 369


>gi|161339252|gb|ABX64377.1| GyrB [Gordonia amicalis]
          Length = 391

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 120/396 (30%), Positives = 194/396 (48%), Gaps = 38/396 (9%)

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS ++ + +AR    ++Q +S   P +   ++     K GT + F PDP+IF + 
Sbjct: 1   SVVNALSTKVELEIARDGHNWAQTYSYAKPGAL--EQGDATRKTGTTVRFWPDPQIFTET 58

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDK-----------------------------E 250
             F+A  + +  Q  A+L+  +    +  +                             E
Sbjct: 59  TRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEAPGDANGDEDAPATDVAEVVLTETE 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
            A+    P+   +++P GL  Y++     +  I + +     + +G     VE A+ W  
Sbjct: 119 KAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGFSAKGEGH---EVEIAMQWNA 175

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                + ++ NTI T EGGTHE G R ALT  + KYA   +   ++   +  DD+     
Sbjct: 176 GYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLIKEKDGKLTGDDIREGLA 235

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            ++S  + +P+F GQTKTKL + + +  V+    +   H+   NP EA  +++   + ++
Sbjct: 236 AVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEANPAEAKIIIKKAADSAQ 295

Query: 428 ERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R+  R+    V RKTA     LPGKLADC  N     E++IVEGDSAGGSAK  R+   
Sbjct: 296 ARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSAGGSAKSGRDSMY 355

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           QA+LPLRGKI+NV  A  +++  N ++  ++ A G 
Sbjct: 356 QAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGT 391


>gi|30793738|gb|AAM52931.1| DNA gyrase subunit beta [Aeromonas salmonicida]
          Length = 321

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 115/332 (34%), Positives = 177/332 (53%), Gaps = 15/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++     +  GT + F P P IF D   +    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTL-YHYEILAKRLREL 59

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 60  SFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQ 112

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 113 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSK 169

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 170 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLEN 229

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 230 PGDAKIVVNKIIDAARPREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 289

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 321


>gi|207678281|gb|ACI25154.1| DNA gyrase B [Phaeobacter sp. M8-3.2]
          Length = 340

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 108/349 (30%), Positives = 174/349 (49%), Gaps = 13/349 (3%)

Query: 168 ELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARL 227
            L + + R       +F RG     L+   +  ++ GT + F      F +   +    L
Sbjct: 1   WLELRIWRDGKEHVARFERGDTAEHLKVVGECGDQTGTEVRFLASTDTFSNL-EYSFETL 59

Query: 228 LKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEI 287
            K  +  A+L+  V+     ++          + E ++ GG+K +++    ++S +    
Sbjct: 60  EKRLRELAFLNSGVRIILIDER-----PAERLEVELFYEGGVKEFVKYLDRSKSPVMEAP 114

Query: 288 FTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYA 346
                +K       VE A+ W +     +  + N I   +GGTH +G R ALTR I  YA
Sbjct: 115 IYITGDKDDI---GVEVAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRTINNYA 171

Query: 347 ELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF 404
           + +    K  +S   DD       +LSV + +P+F+ QTK KLVS + +  VE+ + +  
Sbjct: 172 QSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVNEKL 231

Query: 405 DHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHG 463
             +  +NP +A +++  +IE +  R   RK RE   RKTA+    L GKL DCS+     
Sbjct: 232 AEWFEENPNQAKQIVGKIIEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSEKDPSK 291

Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           TE+F+VEGDSAGGSA+  R+R  QA+LPLRGKILNV  A  +++  +Q+
Sbjct: 292 TEVFLVEGDSAGGSAQTGRDRMTQAILPLRGKILNVERARFDRMLGSQE 340


>gi|89143200|emb|CAJ57497.1| DNA gyrase subunit B [Microbacterium luteolum]
          Length = 356

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 109/355 (30%), Positives = 172/355 (48%), Gaps = 13/355 (3%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           RQ   +   F+ G       ++    ++ GT ITF PDP IF +   FD   L    Q  
Sbjct: 1   RQGYTWHHSFADGGHPQQALERGAETDETGTDITFWPDPAIFTEGVEFDYETLRTRFQQM 60

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIP--------EKEEFYFPGGLKTYLQTKLENRSLISSE 286
           A+L+  ++     ++    +              + F +  GL  Y++   + R      
Sbjct: 61  AFLNKGLRIELHDERAGHTEVIEEGGTSVEQQRGDVFLYERGLVDYVEYLNKVRHAEVVN 120

Query: 287 IFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKK 344
                 E +    + ++E A+ W       + +Y NTI T EGGTHE G R ALT  + K
Sbjct: 121 DEIIAFESEDAERKISLEVAMQWTTSYTENVFTYANTINTHEGGTHEEGFRAALTTLVNK 180

Query: 345 YAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRD 402
           YA       ++  ++  DD+      ++S+ + EP+F GQTKTKL + +A+  V+  + D
Sbjct: 181 YARANNLLKEKDDNLSGDDVREGLTAVISIKLGEPQFEGQTKTKLGNTEAKAFVQKVVGD 240

Query: 403 PFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIA 461
               +L +NP +A  ++   I+ +  RL  RK RE  R+ +      +P KL DC+    
Sbjct: 241 QLGDWLDRNPTQAKNVIRKAIDAATARLAARKARETARRKSVFESAAMPDKLKDCTSKDP 300

Query: 462 HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
             +E+F+VEGDSAGGSA Q R+   QA+L LRGKILNV  A  +K   N+++  +
Sbjct: 301 SISEIFLVEGDSAGGSAVQGRDPHTQAILALRGKILNVERARLDKALGNREVQAM 355


>gi|318066821|emb|CBY89122.1| DNA gyrase subunit B [Halomonas alimentaria]
          Length = 349

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 128/360 (35%), Positives = 190/360 (52%), Gaps = 16/360 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +TV R   ++ Q +  G+P +PL    K     GTR+ FRP P+ FG+
Sbjct: 1   VSVVNALSEELRLTVWRAGDVYEQLYRHGVPQAPLSVVGKTEK-SGTRVHFRPSPETFGN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              +    L K  +  ++L+  V      ++   E       E F++ GGLK ++     
Sbjct: 60  I-EYHFDILAKRLRELSFLNSGVAIRLIDERSGKE-------EVFHYEGGLKAFVDHLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N+++++         + G     VE A+ W +     I  Y N I   +GG H +G R A
Sbjct: 112 NKTVLNPVFHFNAEREDGV---GVEVAMQWSDSFNENIFCYTNNIPQRDGGAHLAGFRAA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  IS   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRTLNGYIESEGLLKKSKISTAGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  +   F  YL++ P EA  ++  +++ +  R   RK      RK A+    LPGKLA
Sbjct: 229 VEQEMARLFGEYLIEKPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLA 288

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +ELF+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 289 DCQEKDPSLSELFLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 348


>gi|148762417|dbj|BAF63910.1| DNA gyrase subunit B [Virgibacillus necropolis]
          Length = 325

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 113/336 (33%), Positives = 171/336 (50%), Gaps = 15/336 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG SVVNALS  L V V     +    F RG+P   ++      +  GT +
Sbjct: 1   YKVCGGLHGVGASVVNALSSNLEVYVHLDGKVHFLGFERGVPQEEIKVIGDT-DITGTIV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PD +IF +   +D   L    +  A+L+  +       +   E         +Y+ G
Sbjct: 60  HFKPDTEIFTETTSYDFDTLAIRVRELAFLNKGLSISLEDKRNDEE------PVNYYYEG 113

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+ +Y++    +R ++    F  + E +G    TVE AI + +     I S+ N I T E
Sbjct: 114 GISSYVEYINRSREVLHEP-FYIEAEDQGI---TVEVAIQYNDGFASNIYSFANNIHTHE 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTHESG +  LTR I  YA      +    ++  DD+      I+S+   +P+F GQTK
Sbjct: 170 GGTHESGFKTGLTRVINDYARKNNLFKENDPNLTGDDVREGMTAIISIKHPDPQFEGQTK 229

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTA 443
           TKL S + +   ++   + F  +L +NP  A  ++E  ++        ++ +    RK+A
Sbjct: 230 TKLGSSEVRTVTDSMFSEAFSKFLFENPSVAKIVVEKGLMASRARAAAKKARELTRRKSA 289

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADCS   A  +EL+IVEGDSAGGSAK
Sbjct: 290 LEISNLPGKLADCSSKDAKISELYIVEGDSAGGSAK 325


>gi|195926974|dbj|BAG68374.1| gyrase B [Campylobacter upsaliensis]
          Length = 339

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 123/353 (34%), Positives = 182/353 (51%), Gaps = 18/353 (5%)

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L  TV R+  I+ Q+F++G   S      + +   GT I F PD +IF    
Sbjct: 1   VVNALSKKLVATVQREGKIYRQEFAKGQIASEFGIIGESKK-TGTSIEFFPDEEIFELT- 58

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   L K  +  AYL+ ++   +  ++       +   E F+F GG+  ++     N+
Sbjct: 59  EFDYEILAKRFRELAYLNPKITINFKDNR-------VGRNESFHFEGGISQFVS--DLNK 109

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALT 339
               ++      ++       VE A+ + +   E   S+ N I T +GGTHE+G R+ LT
Sbjct: 110 KQALTKPIFFSVDEDNV---NVEVALLYNDTYSENLLSFVNNIKTPDGGTHETGFRMGLT 166

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y E      ++   I  +D+    + I+SV + EP+F GQTK KL S   +  V 
Sbjct: 167 RVITNYVEANASAREKDNKITGEDVREGLIAIVSVKVPEPQFEGQTKGKLGSSYVRPIVN 226

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
            A  +    Y  +NPIEA  ++   +  +  R   +K RE   +K ++    LPGKLADC
Sbjct: 227 KASFEYLSKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADC 286

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
                  +E+++VEGDSAGGSAKQ R R+ QA+LPLRGKILNV  A  +KI  
Sbjct: 287 QSKDPSESEIYLVEGDSAGGSAKQGRERAFQAILPLRGKILNVEKARLDKILK 339


>gi|307343838|emb|CBJ19524.1| gyrase B subunit [Micromonospora sp. CR36]
          Length = 350

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 103/356 (28%), Positives = 182/356 (51%), Gaps = 9/356 (2%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           + V + +   ++ Q+++   P    +   +  +  G+ ++F PDP +F     FD   + 
Sbjct: 1   MAVEIHKSGFVWRQQYNNSKPGPLDK--GETTDSTGSAVSFWPDPDVFETV-DFDFQTIY 57

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           +  Q  A+L+  ++     ++   E+ G   +  F++ GG+  +++    +++ I   + 
Sbjct: 58  RRLQEMAFLNRALRIHLLDERVAEEEDGRQREVTFFYEGGIADFVRHLNASKNPIHKTVV 117

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
               E++G    ++E A+ W E     + ++ NTI T EGGTHE G R ALT  + +Y  
Sbjct: 118 EFGAEEEG---MSLEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSVVNRYGT 174

Query: 348 LTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
             +  +    +  +D+      I+SV +  P+F GQTKTKL +   +  V+    D    
Sbjct: 175 DKKLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNDRLVD 234

Query: 407 YLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTE 465
           +  +NP EA  +++            ++ ++   RK+ +    +PGKLADC       +E
Sbjct: 235 WFDRNPAEAKMIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESE 294

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
           +FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG
Sbjct: 295 VFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALG 350


>gi|110084494|gb|ABG49404.1| DNA gyrase subunit beta [Aeromonas eucrenophila]
          Length = 323

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 114/334 (34%), Positives = 178/334 (53%), Gaps = 15/334 (4%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           +T+ R   ++ Q +  G P +PL++     +  GT + F P P IF D   +    L K 
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFSDTL-YHYEILAKR 59

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F  
Sbjct: 60  LRELSFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVEYLNQNKTPIHQKVFHF 112

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +  
Sbjct: 113 STEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNHYMDKE 169

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +
Sbjct: 170 DYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLAEF 229

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
           L++NP +A  ++  +I+ +  R    K RE   RK A+    LPGKLADC +     +EL
Sbjct: 230 LLENPGDAKIVVNKIIDAARAREAACKARELTRRKGALDIAGLPGKLADCQEKDPALSEL 289

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           +IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 YIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 323


>gi|307343836|emb|CBJ19523.1| gyrase B subunit [Micromonospora sp. CR30]
          Length = 350

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 103/355 (29%), Positives = 181/355 (50%), Gaps = 9/355 (2%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V + +   ++ Q+++   P    +   +  +  G+ ++F PDP +F     FD   + + 
Sbjct: 2   VEIHKSGFVWRQQYNNSKPGPLDK--GETTDSTGSAVSFWPDPDVFETV-DFDFQTIYRR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            Q  A+L+  ++     ++   E+ G   +  F++ GG+  +++    +++ I   +   
Sbjct: 59  LQEMAFLNRALRIHLLDERVAEEEDGRQREVTFFYEGGIADFVRHLNASKNPIHKTVVEF 118

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             E++G    ++E A+ W E     + ++ NTI T EGGTHE G R ALT  + +Y    
Sbjct: 119 GAEEEG---MSLEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSVVNRYGTDK 175

Query: 350 QNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
           +  +    +  +D+      I+SV +  P+F GQTKTKL +   +  V+    D    + 
Sbjct: 176 KLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWF 235

Query: 409 VQNPIEATKLLE-WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
            +NP EA  +++            ++ ++   RK+ +    +PGKLADC       +E+F
Sbjct: 236 DRNPAEAKMIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVF 295

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           IVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG 
Sbjct: 296 IVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGT 350


>gi|307343776|emb|CBJ19493.1| gyrase B subunit [Micromonospora fulviviridis]
          Length = 342

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 102/348 (29%), Positives = 176/348 (50%), Gaps = 9/348 (2%)

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
           + +++    P    +   +   + G+ ++F PDP +F     FD   + +  Q  A+L+ 
Sbjct: 1   WRRQYHNSKPTPLEK--GETTGRTGSAVSFWPDPDVFETV-DFDFQTIYRRLQEMAFLNR 57

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            ++     ++   E+ G   +  FY+ GG+  +++    +++ I   +     E++G   
Sbjct: 58  ALRIHLLDERVAEEEDGRQREVTFYYEGGIADFVRHLNASKNPIHKTVVEFGAEEEG--- 114

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR-AISI 357
            +VE A+ W E     + ++ NTI T EGGTHE G R ALT  + +Y    +  +    +
Sbjct: 115 MSVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSVVNRYGAEKKLLKGDEKL 174

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             +D+      I+SV +  P+F GQTKTKL +   +  V+    +    +  +NP EA  
Sbjct: 175 SGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNEWLVDWFDRNPAEAKM 234

Query: 418 LLE-WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           +++            ++ ++   RK+ +    +PGKLADC       +E+FIVEGDSAGG
Sbjct: 235 IIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGG 294

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           SAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG   
Sbjct: 295 SAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGI 342


>gi|170178298|gb|ACB10196.1| DNA gyrase subunit B [Kribbella koreensis]
          Length = 370

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 124/371 (33%), Positives = 193/371 (52%), Gaps = 8/371 (2%)

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKE 261
            GT ITF   P +F     +    L    +  A+L+  ++     ++ +  ++ G P ++
Sbjct: 2   NGTTITFWASPDVFETTT-YSYETLATRFREYAFLNKGLELVIRDERPDHLDEDGKPLEQ 60

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F +  GL  Y++     R  +  ++ + +         ++E A+ W       + ++ N
Sbjct: 61  SFRYDDGLVDYVKYLTGIRETVHRDVISFEAAAADDT-MSLEVALQWSGSFQESVHTFAN 119

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I T EGGTHE G R ALT  +  + E      K+   +  DD+      I+SV + EP+
Sbjct: 120 AINTHEGGTHEEGFRAALTSLVNSFGEDQGMIKKKEDRLTGDDIREGLTAIISVKLAEPQ 179

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE- 437
           F GQTKTKL + + +  V+  + D    +  QNP E  +++      +  R+  RK R+ 
Sbjct: 180 FEGQTKTKLGNTEVKGFVQRVVNDRLGAWFEQNPQEGKEIIRKATAAASARIAARKARDL 239

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
             NRK  +    LPGKL+DC        E++IVEGDSAGGSAK  R+   QA+LP+RGKI
Sbjct: 240 ARNRKGLLGGGGLPGKLSDCQSTNPEECEVYIVEGDSAGGSAKGGRDPKYQAILPIRGKI 299

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556
           LNV  A  +++  N +++ ++ ALG      + EE LRY K++IM DADVDG HI +LLL
Sbjct: 300 LNVEKARIDRVLQNNEVLAIISALGTGIHEDFDEEKLRYHKIVIMADADVDGQHIRTLLL 359

Query: 557 TFFYQEMYDLI 567
           T  ++ M  LI
Sbjct: 360 TLLFRFMRPLI 370


>gi|159576568|dbj|BAF92832.1| DNA gyrase subunit B [Halomonas meridiana]
          Length = 324

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 117/336 (34%), Positives = 174/336 (51%), Gaps = 16/336 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG+SVVNALS+EL +T+ RQ  +F Q +  G+P +PL    K     GTR+
Sbjct: 1   YKVCGGLHGVGVSVVNALSEELRLTIWRQGEVFEQIYHHGVPQAPLSVVGKTEK-SGTRV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            FRP P  F +   F    L K  +  ++L+  V      ++   E       E F++ G
Sbjct: 60  HFRPSPATFAN-IEFHYDILAKRLRELSFLNSGVAIRLMDERSGKE-------ELFHYEG 111

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           GLK ++    +N+++++           G     VE A+ W +     I  Y N I   +
Sbjct: 112 GLKAFVDHLNKNKTVLNPVFHFNAGRDDGV---EVEVAMQWSDAFTENIFCYTNNIPQRD 168

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK
Sbjct: 169 GGTHLAGFRAALTRTLNHYIEAEGLLKKAKVNTSGDDAREGLTAIISVKVPDPKFSSQTK 228

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTA 443
            KLVS + +  VE  +   F  YL++ P EA  ++  +++        R+ +    RK A
Sbjct: 229 DKLVSSEVKTAVEQEMGRLFADYLIEKPNEAKAIVNKMLDAARAREAARKARDMTRRKGA 288

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADC +     +EL++VEGDSAGGSAK
Sbjct: 289 LDIAGLPGKLADCQEKDPSQSELYLVEGDSAGGSAK 324


>gi|193788053|dbj|BAG50527.1| DNA gyrase subunit B [bacterium GMW-20]
 gi|193788069|dbj|BAG50535.1| DNA gyrase subunit B [bacterium GMW-40]
          Length = 346

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 122/355 (34%), Positives = 189/355 (53%), Gaps = 16/355 (4%)

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
            R   ++ Q +  G P +PL++        GT + F P P IF D   +    L K  + 
Sbjct: 1   RRNGHVYEQTYHLGEPQAPLKQIGDSSG-TGTEVRFWPSPTIFTDTL-YHYEILAKRLRE 58

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE
Sbjct: 59  LSFLNSGVSIRLHDERDGRE-------VHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTE 111

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350
             G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +     
Sbjct: 112 HDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYS 168

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++
Sbjct: 169 KKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLE 228

Query: 411 NPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IV
Sbjct: 229 NPSDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIV 288

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           EGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC  
Sbjct: 289 EGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGI 343


>gi|193788045|dbj|BAG50523.1| DNA gyrase subunit B [bacterium GMW-5]
          Length = 347

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 117/355 (32%), Positives = 186/355 (52%), Gaps = 15/355 (4%)

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
            R   +  Q ++ G+P +P+++        GT I F P  + F D   F    L K  + 
Sbjct: 1   RRDGKVHEQFYTHGVPDAPIKEIGDATK-TGTEIRFWPSEQTFSDV-EFHFEILAKRVRE 58

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            ++L+  V      +++        + E F + GG+  ++     N++ ++ ++F    E
Sbjct: 59  LSFLNSGVGIRLVDERDN-------KNEFFKYEGGISAFVDYLNRNKTPVNKDVFHFMQE 111

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQ 350
           +      TVE A+ W +     I  + N I   +GGTH +G R ALTR +  Y E     
Sbjct: 112 RDD--GITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLAGFRSALTRNLNNYMENEGYN 169

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE  + +  + YL++
Sbjct: 170 KKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAAVEQTMGEKLNDYLLE 229

Query: 411 NPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           NP +A  ++  +++ +  R   RK R    RK A+    LPGKLADC +     +E++IV
Sbjct: 230 NPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIV 289

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           EGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC  
Sbjct: 290 EGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 344


>gi|325114637|emb|CBZ50193.1| hypothetical protein NCLIV_006680 [Neospora caninum Liverpool]
          Length = 808

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 75/202 (37%), Positives = 101/202 (50%), Gaps = 39/202 (19%)

Query: 60  MRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGN-GFLTVVDNGRGIPV 118
           MRPGMYIG TD + LHHL  E IDNA+DE+  G    I V L  +   +TV D+GRGIP 
Sbjct: 1   MRPGMYIGSTDTEGLHHLVWEAIDNAVDEIENGGCRHIVVVLHSDRRSVTVADDGRGIPC 60

Query: 119 ENHPKFPNKSTLEIILTTLHAGGKF---------------DNSTYEISGGLHGVGISVVN 163
             HP+    STLE + T LHAGGKF                +S+Y  +GGLHGVG SV+N
Sbjct: 61  GVHPQ-TGVSTLETVFTKLHAGGKFAPAASQSVSSGAIEGASSSYAFAGGLHGVGSSVIN 119

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS +LHV                          +     GT +TF+ D ++FG+    +
Sbjct: 120 ALSAKLHVAS----------------------GPESVPDSGTCLTFQFDTQVFGEDVLLE 157

Query: 224 AARLLKMTQSKAYLSGRVKTCW 245
             ++ +  ++ AYL       +
Sbjct: 158 GKKIERRLKALAYLHPTASFQF 179



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 100/245 (40%), Positives = 134/245 (54%), Gaps = 12/245 (4%)

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           +R +S+  + L    VG++S+ +RE +F GQTK KL +   +  VE  + D    Y   +
Sbjct: 352 ERTLSVQGEFLREGLVGVVSLKMREAQFEGQTKKKLGNKKVKGIVEELVADGLLSYFESH 411

Query: 412 PIEATKLLEWVIERSEERLRR----RKQREVNRKTAIRKLRLPGKLADCSQNIAHGT--- 464
           P    KLL+         +         R   + +      LPGKLADCS   A      
Sbjct: 412 PQNLQKLLQKAAAARAAAVAAKAARDFARAKQQSSTFHLTLLPGKLADCSPTNAQERLSK 471

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA-GSEKIRNNQQIMDLVQALGCR 523
           E+FIVEG+SA GSAKQAR+R  QA+LPLRGKILNV       KI  N+++  L+ ALG  
Sbjct: 472 EIFIVEGESAAGSAKQARDRRTQAILPLRGKILNVEKLGNFGKIFENEELKALIAALGIS 531

Query: 524 TRSQYREE----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
                        LRY +VII+TDADVDGAHI SLLLTFF++   +L  Q  +F+  PPL
Sbjct: 532 MTKTGEVRADLDGLRYSRVIILTDADVDGAHIRSLLLTFFFRLQPELFRQSRIFVACPPL 591

Query: 580 FRITQ 584
           F+I+ 
Sbjct: 592 FKISH 596



 Score = 94.5 bits (233), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669
             + + RFKGLGEM   QL+ T M    R L R+ +       ++ +  +  LMG   + 
Sbjct: 734 PGVTLQRFKGLGEMQPEQLRRTTMSPATRILKRISV----ADAQEAEAVVASLMGDDVEA 789

Query: 670 RFKFIQERAS--FIDDVG 685
           R K I E +S  F++D+ 
Sbjct: 790 RKKIISEASSEVFVEDLD 807


>gi|93277206|gb|ABF06421.1| gyrase B [Streptomyces sp. MC1]
          Length = 350

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 110/338 (32%), Positives = 172/338 (50%), Gaps = 16/338 (4%)

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA---------- 252
            G+ +TF  DP+I      +    L +  Q  A+L+  +    + ++E A          
Sbjct: 1   TGSSVTFWADPEILETT-EYSFETLSRRFQEMAFLNKGLTIRLTDERESAKATSGADEAG 59

Query: 253 -EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
            ++    +   +++ GG+  +++     +             +      ++E A+ W   
Sbjct: 60  ADEKAEVKTVTYHYEGGIVDFVKYLNSRKGEAVHPTVVSLEAEDKDKSLSLEVAMQWNSG 119

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVG 368
               + S+ N I T EGGTHE G R ALT  I KYA   +   ++  ++  DD+      
Sbjct: 120 YTEGVYSFANIIHTHEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTA 179

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           I+SV + EP+F GQTKTKL + +A+  V+ A+ +  + +L +NP+EA  ++   I+ +  
Sbjct: 180 IISVKLSEPQFEGQTKTKLGNTEAKTFVQKAVYEHLNDWLDRNPVEAADIIRKGIQAATA 239

Query: 429 RLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
           R+  RK R++ R+  +     LPGKLADC  N     E+FIVEGDSAGGSAK  RN   Q
Sbjct: 240 RVAARKARDLTRRKGLLESASLPGKLADCQSNDPAKCEIFIVEGDSAGGSAKFGRNPQYQ 299

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525
           A+LP+RGKILNV  A  +KI  NQ+I  L+ A G    
Sbjct: 300 AILPIRGKILNVEKARIDKILQNQEIQALISAFGTGVH 337


>gi|238767792|dbj|BAH66657.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238767806|dbj|BAH66664.1| DNA gyrase subunit beta [Aeromonas sp. No. 34]
 gi|238768204|dbj|BAH66665.1| DNA gyrase subunit beta [Aeromonas sp. No. 34-2]
 gi|238768208|dbj|BAH66667.1| DNA gyrase subunit beta [Aeromonas sp. No. 141]
 gi|238768210|dbj|BAH66668.1| DNA gyrase subunit beta [Aeromonas sp. No. 29]
 gi|238768218|dbj|BAH66672.1| DNA gyrase subunit beta [Aeromonas sp. No. 62]
 gi|238768220|dbj|BAH66673.1| DNA gyrase subunit beta [Aeromonas sp. No. 21]
 gi|238768254|dbj|BAH66690.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768262|dbj|BAH66694.1| DNA gyrase subunit beta [Aeromonas punctata]
 gi|238768264|dbj|BAH66695.1| DNA gyrase subunit beta [Aeromonas punctata]
 gi|238768298|dbj|BAH66712.1| DNA gyrase subunit beta [Aeromonas sp. KYO548]
 gi|238768300|dbj|BAH66713.1| DNA gyrase subunit beta [Aeromonas sp. KYO527]
 gi|238768306|dbj|BAH66716.1| DNA gyrase subunit beta [Aeromonas sp. KYO1682]
 gi|238768318|dbj|BAH66722.1| DNA gyrase subunit beta [Aeromonas sp. KYO1761]
 gi|238768320|dbj|BAH66723.1| DNA gyrase subunit beta [Aeromonas sp. KYO1866]
 gi|238768330|dbj|BAH66728.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768346|dbj|BAH66736.1| DNA gyrase subunit beta [Aeromonas sp. KC4]
 gi|238768354|dbj|BAH66740.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768360|dbj|BAH66743.1| DNA gyrase subunit beta [Aeromonas sp. KC7]
 gi|238768368|dbj|BAH66747.1| DNA gyrase subunit beta [Aeromonas sp. KC11]
 gi|238768382|dbj|BAH66754.1| DNA gyrase subunit beta [Aeromonas punctata]
 gi|238768384|dbj|BAH66755.1| DNA gyrase subunit beta [Aeromonas punctata]
 gi|238768388|dbj|BAH66757.1| DNA gyrase subunit beta [Aeromonas punctata]
 gi|238768398|dbj|BAH66762.1| DNA gyrase subunit beta [Aeromonas punctata]
 gi|238768408|dbj|BAH66767.1| DNA gyrase subunit beta [Aeromonas punctata]
 gi|238768414|dbj|BAH66770.1| DNA gyrase subunit beta [Aeromonas punctata]
 gi|238768432|dbj|BAH66779.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768436|dbj|BAH66781.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768438|dbj|BAH66782.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768454|dbj|BAH66790.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768468|dbj|BAH66797.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768470|dbj|BAH66798.1| DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 338

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 120/349 (34%), Positives = 188/349 (53%), Gaps = 16/349 (4%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F    L 
Sbjct: 2   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEILA 59

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F
Sbjct: 60  KRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVF 112

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
              TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +
Sbjct: 113 HFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNNYMD 169

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                 K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +   
Sbjct: 170 KEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLA 229

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +
Sbjct: 230 DFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALS 289

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 290 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEV 338


>gi|170178292|gb|ACB10193.1| DNA gyrase subunit B [Kribbella aluminosa]
          Length = 370

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 124/371 (33%), Positives = 193/371 (52%), Gaps = 8/371 (2%)

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKE 261
            GT ITF     +F     +    L    +  A+L+  ++     ++ +  ++ G P ++
Sbjct: 2   NGTTITFWASEDVFETTT-YSYETLATRFREYAFLNKGLELVIRDERPDHFDEDGKPLEQ 60

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F +  GL  Y++     R  +  ++ + +      +  ++E A+ W       + ++ N
Sbjct: 61  SFRYDDGLVDYVKYLTGIRETVHRDVISFEA-ATAENTMSLEVALQWSGSFQESVHTFAN 119

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I T EGGTHE G R ALT  +  + E      K+   +  DD+      I+SV + EP+
Sbjct: 120 AINTHEGGTHEEGFRAALTSLVNSFGEDQGMIKKKEDRLTGDDIREGLTAIISVKLAEPQ 179

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE- 437
           F GQTKTKL + + +  V+  + D    +  QNP E  +++      +  R+  RK R+ 
Sbjct: 180 FEGQTKTKLGNTEVKGFVQRVVNDKLGAWFEQNPAEGREIIRKASAAASARIAARKARDL 239

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
             NRK  +    LPGKLADC        E++IVEGDSAGGSAK  R+   QA+LP+RGKI
Sbjct: 240 ARNRKGLLGGGGLPGKLADCQSTNPEECEVYIVEGDSAGGSAKGGRDPKFQAILPIRGKI 299

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556
           LNV  A  +++  N +++ ++ ALG      + EE LRY K++IM DADVDG HI +LLL
Sbjct: 300 LNVEKARIDRVLQNNEVLAIISALGTGIHEDFDEEKLRYHKIVIMADADVDGQHIRTLLL 359

Query: 557 TFFYQEMYDLI 567
           T  ++ M  LI
Sbjct: 360 TLLFRFMRPLI 370


>gi|170177816|gb|ACB10234.1| GyrB [Aeromonas aquariorum]
          Length = 347

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 122/356 (34%), Positives = 190/356 (53%), Gaps = 16/356 (4%)

Query: 173 VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQ 232
           + R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K  +
Sbjct: 2   IRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTL-FHYEILAKRLR 59

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             ++L+  V      +++  E         F + G +K +++   +N++ I  ++F   T
Sbjct: 60  ELSFLNSGVSIRLMDERDGRE-------AHFCYEGXIKAFVEYLNQNKTPIHPKVFHFTT 112

Query: 293 EKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ- 350
           E+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +    
Sbjct: 113 EQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDY 169

Query: 351 -NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
             K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L+
Sbjct: 170 SKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLL 229

Query: 410 QNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFI 468
           +NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+I
Sbjct: 230 ENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYI 289

Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC  
Sbjct: 290 VEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGI 345


>gi|115381526|gb|ABI96445.1| gyrase B [Salmonella enterica subsp. enterica serovar Coeln]
          Length = 323

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 116/330 (35%), Positives = 180/330 (54%), Gaps = 14/330 (4%)

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
               +K GT + F P P+ F +   F+   L K  +  ++L+  V       ++  E   
Sbjct: 4   TGDTDKTGTMVRFWPSPETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--- 60

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
               + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I
Sbjct: 61  ----DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENI 113

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV 
Sbjct: 114 YCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVK 173

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R
Sbjct: 174 VPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAAR 233

Query: 434 KQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           + R    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL
Sbjct: 234 RAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPL 293

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           +GKILNV  A  +K+ ++Q++  L+ ALGC
Sbjct: 294 KGKILNVEKARFDKMLSSQEVATLITALGC 323


>gi|6644326|gb|AAF21011.1|AF208260_1 DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 384

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 127/374 (33%), Positives = 197/374 (52%), Gaps = 16/374 (4%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NAL D+L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F
Sbjct: 13  NALGDKLMLTIRRNGNVYEQTYHLGEPHAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-F 70

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  ++L+  V      +++  E         F + GG+K +++   +N++ 
Sbjct: 71  HYEILAKRLRELSFLNSGVSIRLKDERDGRE-------AHFCYEGGIKAFVEYLNQNKTP 123

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           I  ++F   TE+ G     VE      +     +  + N I   +GGTH  G R  LTR 
Sbjct: 124 IHPKVFHFTTEQDGI---GVEVERDGNDAYQEGVYCFTNNIPERDGGTHLVGFRTVLTRT 180

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A
Sbjct: 181 LNSYMDKGGTYRKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQA 240

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +
Sbjct: 241 MGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQE 300

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ 
Sbjct: 301 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLIT 360

Query: 519 ALGCRTRSQYREED 532
           ALGC       + D
Sbjct: 361 ALGCGIGPVESKPD 374


>gi|7242880|dbj|BAA92528.1| type II DNA topoisomerase [Porphyra tenera]
 gi|7768587|dbj|BAA95458.1| type II DNA topoisomerase [Porphyra yezoensis]
          Length = 402

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 86/431 (19%), Positives = 146/431 (33%), Gaps = 40/431 (9%)

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           N  ++V +NG GIPV  H K       E+I   L     +D+   ++ GG +G G  + N
Sbjct: 1   NNRVSVWNNGAGIPVAMHAK-EGVYVPELIFGHLLTSSNYDDGEKKVVGGRNGYGAKLAN 59

Query: 164 ALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA- 220
             S    V  A       + Q F R +              R T      +P +      
Sbjct: 60  IFSTRFVVETADASSGKTYKQTFKRNMMDRGTPAIRASAKPRDTWTRITFEPDLAKFGMD 119

Query: 221 ---GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
                  A L       A +   +    +  K                    K Y+   L
Sbjct: 120 RLNEDAVAVLQMRVVDMAGVVPGIAVYLNGAKLKI--------------NSFKQYVDLHL 165

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337
            +                       E  ++  +     TS+ N+I T +GGTH + +   
Sbjct: 166 ADAPDAPRIHDATSG--------RWEVVVSLSDGQLTQTSFVNSIATTKGGTHVNHVADQ 217

Query: 338 LTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           L   I+++    +  + + +    +       +   +  P F  QTK  L S  A    +
Sbjct: 218 LVSRIQEHIA--KKHKTLKVKPFQIKSQLSIYVKCLVENPAFDSQTKEMLTSRPASFGSK 275

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
               D          +  + ++E V+  +E R  +   +    K A          A+ +
Sbjct: 276 WVCPDRMAK-----DLIKSGVVESVLSLAESRQVKELAKTDGGKRARVSGIPKLDDANLA 330

Query: 458 -QNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
               +    L + EGDSA   A    +   R    V PLRGK+LNV  A  ++I +N +I
Sbjct: 331 GTRDSAKCTLILTEGDSAKALAISGLSVVGRDYYGVFPLRGKLLNVREATHKQIMDNAEI 390

Query: 514 MDLVQALGCRT 524
            +L + +G + 
Sbjct: 391 TNLKKIIGLQH 401


>gi|238767794|dbj|BAH66658.1| DNA gyrase subunit beta [Aeromonas sobria]
 gi|238768224|dbj|BAH66675.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768336|dbj|BAH66731.1| DNA gyrase subunit beta [Aeromonas sp. TSC4]
 gi|238768462|dbj|BAH66794.1| DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 338

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 120/349 (34%), Positives = 188/349 (53%), Gaps = 16/349 (4%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F    L 
Sbjct: 2   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEILA 59

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F
Sbjct: 60  KRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVF 112

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
              TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +
Sbjct: 113 HFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMD 169

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                 K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +   
Sbjct: 170 KEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLA 229

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +
Sbjct: 230 DFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALS 289

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 290 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEV 338


>gi|238768222|dbj|BAH66674.1| DNA gyrase subunit beta [Aeromonas sobria]
          Length = 338

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 121/349 (34%), Positives = 188/349 (53%), Gaps = 16/349 (4%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F    L 
Sbjct: 2   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEILA 59

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F
Sbjct: 60  KRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVF 112

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
              TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y E
Sbjct: 113 HFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYME 169

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                 K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +   
Sbjct: 170 KEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLA 229

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +
Sbjct: 230 DFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALS 289

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 290 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEV 338


>gi|208609026|dbj|BAG72139.1| DNA gyrase B [Paenibacillus apiarius]
          Length = 300

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 96/285 (33%), Positives = 152/285 (53%), Gaps = 12/285 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS+ + V V + N I   +F+ G P + L    +     G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSEWMEVEVKQNNKIHYMRFTVGTPDADLAVIGETEE-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T++TF+PDP IF +   F+   L K  +  A+L+  ++      +   E+      E F+
Sbjct: 60  TKVTFKPDPTIFTETTVFEYDVLQKRIRELAFLNKGLRITLKDTRPDQERE-----ESFH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  +++   +NR  +  E+   + EK G     VE A+ + +     I S+ N I 
Sbjct: 115 YEGGIVQFVEYLNKNREPLHEEVIYCEGEKDGLF---VEVALQYNDSYVSNIYSFANNIN 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE+G + ALTR I  Y+       ++  ++  DD+      I+SV I+EP+F G
Sbjct: 172 THEGGTHETGFKTALTRVINDYSRKFNLLKEKDPNLSGDDVREGITAIISVKIQEPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
           QTKTKL + +A+   E+   D F  ++ +NP  A K++E  +  S
Sbjct: 232 QTKTKLGNSEARSITESVFGDRFSTFMEENPGVAKKVVEKALMAS 276


>gi|307343844|emb|CBJ19527.1| gyrase B subunit [Micromonospora sp. SG2]
          Length = 350

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 102/355 (28%), Positives = 179/355 (50%), Gaps = 9/355 (2%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V + +   ++ Q++    P    +   +  ++ G+ +TF PD  +F     FD   + + 
Sbjct: 2   VEIHKSGFVWRQQYHNSKPSPLEK--GETTDRTGSAVTFWPDESVFETL-DFDFQTIYRR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            Q  A+L+  ++     ++    + G   +  F++ GG+  +++    +++ I   +   
Sbjct: 59  LQEMAFLNRALRIHLLDERVPEGEEGKLREVTFFYEGGIADFVRHLNASKNPIHKTVVEF 118

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             E++G    +VE A+ W E     + ++ NTI T EGGTHE G R ALT  + +Y    
Sbjct: 119 GAEEEG---MSVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRAALTSVVNRYGADK 175

Query: 350 QNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
           +  +    +  +D+      I+SV +  P+F GQTKTKL +   +  V+    +    + 
Sbjct: 176 KLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNEWLVDWF 235

Query: 409 VQNPIEATKLLE-WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
            +NP EA  +++            ++ ++   RK+ +    +PGKLADC       +E+F
Sbjct: 236 DRNPAEAKTIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVF 295

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           IVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG 
Sbjct: 296 IVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGT 350


>gi|89143180|emb|CAJ57487.1| DNA gyrase subunit B [Microbacterium esteraromaticum]
          Length = 340

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 106/339 (31%), Positives = 168/339 (49%), Gaps = 13/339 (3%)

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
            +  ++ GT ITF PDP+IF +   FD   L    Q  A+L+  ++     ++       
Sbjct: 1   GEATDETGTAITFWPDPEIFTETIEFDYDTLRTRFQQMAFLNKGLRIALRDERPAFAIED 60

Query: 257 IPEK--------EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIA 307
             +         E F +  GL  Y++   + R            E +    + ++E A+ 
Sbjct: 61  EVDGTVVSRQPAEVFLYERGLVDYVEYLNKVRKAEVVNEEIIAFESEDTERKISLELAMQ 120

Query: 308 WCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMI 364
           W       + +Y NTI T EGGTHE G R ALT  + +YA       ++  ++  DD+  
Sbjct: 121 WTTSYTENVFTYANTINTHEGGTHEEGFRAALTSLVNRYARANNLLKEKDENLSGDDVRE 180

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
               ++S+ + EP+F GQTKTKL + +A+   +  + D    +  +NP +A  ++   I+
Sbjct: 181 GLTAVISIKLGEPQFEGQTKTKLGNTEAKAFTQKIVNDQLGDWFDRNPQQAKNVIRKAID 240

Query: 425 RSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483
            +  RL  RK RE  R+ +      +P KL DC+      +E+F+VEGDSAGGSA Q R+
Sbjct: 241 AATARLAARKARETARRKSVFESAAMPDKLKDCTSKDPSISEIFLVEGDSAGGSAVQGRD 300

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
              QA+L LRGKILNV  A  +K   N+++  ++QA G 
Sbjct: 301 PHTQAILALRGKILNVERARLDKALGNKEVQAMIQAFGT 339


>gi|238768322|dbj|BAH66724.1| DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 338

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 120/349 (34%), Positives = 188/349 (53%), Gaps = 16/349 (4%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F    L 
Sbjct: 2   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTL-FHYEILA 59

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F
Sbjct: 60  KRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYXNQNKTPIHPKVF 112

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
              TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +
Sbjct: 113 HFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMD 169

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                 K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +   
Sbjct: 170 KEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLA 229

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +
Sbjct: 230 DFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALS 289

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 290 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEV 338


>gi|238767802|dbj|BAH66662.1| DNA gyrase subunit beta [Aeromonas sp. No. 14]
 gi|238768212|dbj|BAH66669.1| DNA gyrase subunit beta [Aeromonas sp. No. 503]
 gi|238768214|dbj|BAH66670.1| DNA gyrase subunit beta [Aeromonas sp. No. 20]
 gi|238768226|dbj|BAH66676.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768232|dbj|BAH66679.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768236|dbj|BAH66681.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768238|dbj|BAH66682.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768248|dbj|BAH66687.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768282|dbj|BAH66704.1| DNA gyrase subunit beta [Aeromonas hydrophila subsp. hydrophila]
 gi|238768286|dbj|BAH66706.1| DNA gyrase subunit beta [Aeromonas hydrophila subsp. hydrophila]
 gi|238768292|dbj|BAH66709.1| DNA gyrase subunit beta [Aeromonas hydrophila subsp. hydrophila]
 gi|238768296|dbj|BAH66711.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768302|dbj|BAH66714.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768310|dbj|BAH66718.1| DNA gyrase subunit beta [Aeromonas sp. KYO1235]
 gi|238768314|dbj|BAH66720.1| DNA gyrase subunit beta [Aeromonas sp. KYO1080]
 gi|238768328|dbj|BAH66727.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768332|dbj|BAH66729.1| DNA gyrase subunit beta [Aeromonas sp. TSC1]
 gi|238768352|dbj|BAH66739.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768356|dbj|BAH66741.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768372|dbj|BAH66749.1| DNA gyrase subunit beta [Aeromonas sp. KC13]
 gi|238768380|dbj|BAH66753.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768386|dbj|BAH66756.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768390|dbj|BAH66758.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768394|dbj|BAH66760.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768396|dbj|BAH66761.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768400|dbj|BAH66763.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768430|dbj|BAH66778.1| DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 338

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 120/349 (34%), Positives = 188/349 (53%), Gaps = 16/349 (4%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F    L 
Sbjct: 2   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEILA 59

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F
Sbjct: 60  KRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVF 112

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
              TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +
Sbjct: 113 HFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMD 169

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                 K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +   
Sbjct: 170 KEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLA 229

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +
Sbjct: 230 DFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALS 289

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 290 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEV 338


>gi|148762387|dbj|BAF63895.1| DNA gyrase subunit B [Halobacillus sp. RG-Hb]
          Length = 324

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 114/336 (33%), Positives = 172/336 (51%), Gaps = 16/336 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG+SVVNALS  L +T+ R   ++ Q ++ G+P +PL    +     GT++
Sbjct: 1   YKVCGGLHGVGVSVVNALSSTLTLTIRRDGKVYEQTYTHGVPDAPLGPVGET-EASGTKV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P P+ F     F    L K  +  A+L+  V+   + ++   E       E F + G
Sbjct: 60  HFIPSPETF-THIEFHYDILAKRLRELAFLNSGVRIRLTDERSGRE-------EVFEYEG 111

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDE 326
           GL+ +++    N++ I+      +  + G    +VE A+ W +   E    + N I   +
Sbjct: 112 GLRAFVEHLNTNKTPINRVFHFNREREDGI---SVEVAMQWNDAFQENLYCFTNNIPQRD 168

Query: 327 GGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK
Sbjct: 169 GGTHLAGFRAALTRSLNNYIEHEGLGKKAKVATSGDDAREGLTAIVSVKVPDPKFSSQTK 228

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTA 443
            KLVS + +  VE  L   F  YL + P EA  ++  +I         R+ +    RK A
Sbjct: 229 DKLVSSEVKTAVEQELYQSFADYLQEQPNEAKLIVNKMIEAARAREAARKARDMTRRKGA 288

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADC +     +EL+IVEGDSAGGSAK
Sbjct: 289 LDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 324


>gi|307343848|emb|CBJ19529.1| gyrase B subunit [Micromonospora sp. SG10]
          Length = 352

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 105/358 (29%), Positives = 182/358 (50%), Gaps = 9/358 (2%)

Query: 173 VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQ 232
           + +  T++ Q ++   P    +   +  ++ G+ ++F PDP +F     FD   + +  Q
Sbjct: 1   IHKSGTVWRQHYTNSKPSPLEK--GEATDRTGSAVSFWPDPDVFETV-DFDFQTIYRRLQ 57

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             A+L+  ++     ++   E+ G   +  FY+ GG+  +++    ++S I   +   + 
Sbjct: 58  EMAFLNRALRIHLLDERVAEEEDGRQREVTFYYEGGIADFVRHLNASKSPIHKTVVEFEA 117

Query: 293 EKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN 351
           E++G    ++E A+ W E     + ++ NTI T EGGTHE G R ALT  + +Y    + 
Sbjct: 118 EEEG---MSLEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSVVNRYGTDKKL 174

Query: 352 KR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            +    +  +D+      I+SV +  P+F GQTKTKL +   +  V+    D    +  +
Sbjct: 175 LKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWFDR 234

Query: 411 NPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           NP EA  ++ +           ++ ++   RK+ +    +PGKLADC       +E+FIV
Sbjct: 235 NPAEAKMIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIV 294

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           EGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG      
Sbjct: 295 EGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGIHDD 352


>gi|226885280|emb|CAX65665.1| gyrase B subunit [Micromonospora matsumotoense]
          Length = 349

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 104/355 (29%), Positives = 179/355 (50%), Gaps = 9/355 (2%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           +   ++ Q++    P S  +   +  ++ G+ ++F PDP +F     FD   + +  Q  
Sbjct: 1   KSGFVWRQQYHNSKPDSLDK--GETTDRTGSAVSFWPDPDVFETT-DFDFQTIYRRLQEM 57

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           A+L+  +      ++    + G P +  FY+ GG+  +++    +++ +   +     E+
Sbjct: 58  AFLNRALSIHLLDERVAEGEEGKPREVTFYYEGGIADFVRHLNASKNPMHKTVVEFAAEE 117

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR 353
           +G    +VE A+ W E     + ++ NTI T EGGTHE G R ALT  + +Y    +  +
Sbjct: 118 EG---MSVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRAALTSVVNRYGADKKLLK 174

Query: 354 -AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
               +  +D+      I+SV +  P+F GQTKTKL +   +  V+    D    +  +NP
Sbjct: 175 GDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWFDRNP 234

Query: 413 IEATKLLE-WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
            EA  +++            ++ ++   RK+ +    +PGKLADC       +E+FIVEG
Sbjct: 235 AEAKTIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVEG 294

Query: 472 DSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS 526
           DSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG     
Sbjct: 295 DSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGIHD 349


>gi|159576577|dbj|BAF92836.1| DNA gyrase subunit B [Halomonas venusta]
          Length = 324

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 119/336 (35%), Positives = 176/336 (52%), Gaps = 16/336 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS+EL +T+ RQ  +F Q +  G+P +PL    K     GTR+
Sbjct: 1   YKVSGGLHGVGVSVVNALSEELRLTIWRQGEVFEQVYQHGVPQAPLGIVGKTEK-SGTRV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            FRP P  F +   F    L K  +  ++L+  V      ++   E       E F++ G
Sbjct: 60  HFRPSPNTFAN-IEFHYDILAKRLRELSFLNSGVAIRLMDERSGKE-------ELFHYEG 111

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           GLK ++    +N+++++         + G     VE A+ W E     I  Y N I   +
Sbjct: 112 GLKAFVDHLNKNKTVLNPVFHFNAVREDGV---EVEVAMQWSEAFTENIFCYTNNIPQRD 168

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK
Sbjct: 169 GGTHLAGFRAALTRTLNHYIEAQGLLKKSKVNTSGDDAREGLTAIISVKVPDPKFSSQTK 228

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTA 443
            KLVS + +  VE  +   F  YL++ P EA  ++  +++        R+ +    RK A
Sbjct: 229 DKLVSSEVKTAVEQEMGRLFADYLIEKPNEAKSIVNKMLDAARAREAARKARDMTRRKGA 288

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADC +     +EL++VEGDSAGGSAK
Sbjct: 289 LDIAGLPGKLADCQEKDPSQSELYLVEGDSAGGSAK 324


>gi|110224968|dbj|BAE97473.1| DNA gyrase subunit B [Streptococcus equinus]
          Length = 300

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 101/302 (33%), Positives = 159/302 (52%), Gaps = 12/302 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS +L V+V R   I  Q++ RG  +  L+      ++ G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVSVYRDGKIHYQEYRRGHVVDDLKVIGDT-DRHG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PD +IF +   FD  +L K  Q  A+L+  ++   +  +E  E     +++ ++
Sbjct: 60  TTVHFTPDGEIFTETIVFDFDKLAKRIQELAFLNRGLRISITDKREGIE-----QEQHYH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+ +Y+Q   EN+ +I         E  G    +VE A+ +       + S+ N I 
Sbjct: 115 YEGGISSYVQFINENKDVIFDTPIYTDGEMDGI---SVEVAMQYTTGYHETVMSFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G R ALTR I  YA   +   ++  ++  DD+      ++SV    P+F G
Sbjct: 172 THEGGTHEQGFRTALTRVINDYARQNKILKEKDDNLTGDDVREGLTAVISVKHPNPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + +  +       D F  +L++NP  A K++E  I  S+ R+  ++ REV RK
Sbjct: 232 QTKTKLGNSEVVKITNRLFSDAFSRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRK 291

Query: 442 TA 443
            +
Sbjct: 292 KS 293


>gi|110224952|dbj|BAE97465.1| DNA gyrase subunit B [Streptococcus bovis]
          Length = 300

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 101/302 (33%), Positives = 160/302 (52%), Gaps = 12/302 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS +L V+V R   I  Q++ RG  +  L+   +  ++ G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVSVYRDGKIHYQEYRRGHVVDDLKVIGET-DRHG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PD +IF +   FD  +L K  Q  A+L+  ++   +  +E  E     +++ ++
Sbjct: 60  TTVHFTPDGEIFTETTVFDFDKLAKRIQELAFLNRGLRISITDKREGIE-----QEQHYH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+ +Y+Q   EN+ +I         E  G    +VE A+ +       + S+ N I 
Sbjct: 115 YEGGISSYVQFINENKDVIFDTPIYTDGEMDGI---SVEVAMQYTTGYHETVMSFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G R ALTR I  YA   +   ++  ++  DD+      ++SV    P+F G
Sbjct: 172 THEGGTHEQGFRTALTRVINDYARQNKILKEKDDNLTGDDVREGLTAVISVKHPNPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + +  +       D F  +L++NP  A K++E  I  S+ R+  ++ REV RK
Sbjct: 232 QTKTKLGNSEVVKITNRLFSDAFSRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRK 291

Query: 442 TA 443
            +
Sbjct: 292 KS 293


>gi|328349723|emb|CBY89169.1| GyrB protein [Flavobacterium sp. R-38477]
          Length = 336

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 130/341 (38%), Positives = 188/341 (55%), Gaps = 9/341 (2%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  +  TV ++  I+ Q++ RG  + P+++  +  +KRGTR TF PD  IF     F
Sbjct: 1   NALSVHMRSTVFKEGKIYEQEYERGKAIYPVKQIGET-DKRGTRQTFYPDNTIFTQTTEF 59

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L    +  +YL+  +   ++  +E  +K      E F+   GLK Y++    NR  
Sbjct: 60  SYDTLSARMRELSYLNKGITITFTDKREADDKG-EFRTEVFHSDEGLKEYIRYLDGNREP 118

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           I S + +   +K       VE A+ +       I SY N I T EGGTH  G R  LTR 
Sbjct: 119 IISHVISMDHDK---GEIPVEVALIYNTSYSENIFSYVNNINTHEGGTHLQGFRTGLTRS 175

Query: 342 IKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +KKYA+ +    K    I  DD       I+SV ++EP+F GQTKTKL + +    V  A
Sbjct: 176 LKKYADASGMLDKLKFDISGDDFREGLTAIISVKVQEPQFEGQTKTKLGNREVVSPVSQA 235

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQ 458
           + D  + YL +NP +A  +++ VI  ++ R   +K RE+  RKT +    LPGKL+DCS+
Sbjct: 236 VGDMIEAYLEENPNDARIIVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLSDCSE 295

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
                 E+++VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV
Sbjct: 296 QDPAKCEVYLVEGDSAGGTAKQGRDRNFQAILPLRGKILNV 336


>gi|189164050|gb|ACD77135.1| FusA [Geobacter sp. Ply1]
          Length = 244

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 109/244 (44%), Positives = 149/244 (61%), Gaps = 4/244 (1%)

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G + ALTR +  YA      +   +    DDL      ++SV I +P+F GQTKTKL
Sbjct: 1   HLAGFKAALTRTMNAYAAANNLLKNEKVSVSGDDLREGLTCVISVKIPQPQFEGQTKTKL 60

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446
            + + +  VE+ L +    YL +NP  A  +L   IE +  R   RK R+    K A+  
Sbjct: 61  GNSEVKGYVESLLNERMAVYLEENPKVAKDILNKSIEAARAREAARKARDLTRHKGALDM 120

Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
             LPGKLADC +      EL++VEGDSAGGSAKQ R+R NQA+LPL+GKILNV  A  +K
Sbjct: 121 GGLPGKLADCQEKDPALCELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDK 180

Query: 507 IRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           + ++Q+I  L+ ALG    +  +    LRY ++I+MTDADVDG HI +LLLTFFY+ M +
Sbjct: 181 MISSQEIRTLITALGTGIGKDDFNIAKLRYHRIIVMTDADVDGQHILTLLLTFFYRNMRE 240

Query: 566 LIEQ 569
           LIE+
Sbjct: 241 LIER 244


>gi|238768290|dbj|BAH66708.1| DNA gyrase subunit beta [Aeromonas hydrophila subsp. hydrophila]
          Length = 338

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 120/349 (34%), Positives = 188/349 (53%), Gaps = 16/349 (4%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F    L 
Sbjct: 2   LLLTIRRNGHVYKQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEILA 59

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F
Sbjct: 60  KRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVF 112

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
              TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +
Sbjct: 113 HFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMD 169

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                 K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +   
Sbjct: 170 KEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLA 229

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +
Sbjct: 230 DFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALS 289

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 290 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEV 338


>gi|115381466|gb|ABI96415.1| gyrase B [Salmonella enterica subsp. enterica serovar Panama]
          Length = 323

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 115/330 (34%), Positives = 179/330 (54%), Gaps = 14/330 (4%)

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
               +K GT + F P  + F +   F+   L K  +  ++L+  V       ++  E   
Sbjct: 4   TGDTDKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--- 60

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
               + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I
Sbjct: 61  ----DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENI 113

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV 
Sbjct: 114 YCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDQEGYSKKAKVSATGDDAREGLIAVVSVK 173

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R
Sbjct: 174 VPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAAR 233

Query: 434 KQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           + R    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL
Sbjct: 234 RAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPL 293

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           +GKILNV  A  +K+ ++Q++  L+ ALGC
Sbjct: 294 KGKILNVEKARFDKMLSSQEVATLITALGC 323


>gi|106895897|gb|ABE96841.1| DNA gyrase subunit B [Aeromonas caviae]
          Length = 338

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 120/350 (34%), Positives = 188/350 (53%), Gaps = 16/350 (4%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K 
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEILAKR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F  
Sbjct: 59  LRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHF 111

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +  
Sbjct: 112 TTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNNYMDKE 168

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +
Sbjct: 169 DYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADF 228

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
           L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL
Sbjct: 229 LLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSEL 288

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L
Sbjct: 289 YIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTL 338


>gi|195926964|dbj|BAG68369.1| gyrase B [Campylobacter mucosalis]
          Length = 339

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 118/352 (33%), Positives = 183/352 (51%), Gaps = 16/352 (4%)

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L VT+ R   +  Q+F++GIP++ LE   K  N+ GT + F  D +IF    
Sbjct: 1   VVNALSKKLVVTIKRDGNVHRQEFAKGIPVTDLEVI-KTTNRTGTAVEFWVDDEIFEVT- 58

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   L K  +  AYL+ ++   +   ++          E ++F GGL++++      +
Sbjct: 59  DFDKNILTKRFKELAYLNPKITINFKDQRD-------GTNESYHFEGGLESFVNDMNT-K 110

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
             +S  +F    E+       + +   +   +  + S+ N I T +GGTHE+G R  LTR
Sbjct: 111 EAVSKAVFFSGGEEDVMVDFALMYNETY---SENLLSFVNNIKTPDGGTHEAGFRAGLTR 167

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  Y        ++   I  +D+    + ++SV + EP+F GQTK KL S   +  V+ 
Sbjct: 168 VITNYIAANAAAREKDTKITGEDIREGLIAVVSVKVPEPQFEGQTKGKLGSSYVKPIVQK 227

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457
              +    Y  +NPIEA  ++   +  +  R   +K R+   +K  +    LPGKLADC 
Sbjct: 228 MTFEVLSKYFEENPIEARAIMNKALMAARGREAAKKARDLTRKKEGLSVGTLPGKLADCQ 287

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
                 +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  +  +KI  
Sbjct: 288 IKDPSISELYLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSRLDKILK 339


>gi|170178296|gb|ACB10195.1| DNA gyrase subunit B [Kribbella flavida]
          Length = 368

 Score =  167 bits (422), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 125/367 (34%), Positives = 189/367 (51%), Gaps = 7/367 (1%)

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            ITF P P +F     +    L    +  A+L+  ++     ++      G+P ++ F +
Sbjct: 4   TITFWPSPDVFETTT-YSYETLSTRFREYAFLNKGLELVIRDERPDHTPEGVPVEQSFKY 62

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
             GL  Y++     R  + S +   +  +      ++E A+ W       + ++ NTI T
Sbjct: 63  DDGLVDYVKYLTGIRETVHSNVIAFEAAQADD-SLSLEVAMQWSGSFQESVHTFANTINT 121

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            EGGTHE G R ALT  +  + E      K+   +  DD+      I+SV +  P+F GQ
Sbjct: 122 HEGGTHEEGFRAALTSLVNSFGEDQGMIKKKEDRLTGDDVREGLTAIISVKLGNPQFEGQ 181

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE--VNR 440
           TKTKL + + +  V+  + D    +  QNP E  +++      +  R+  RK R+   NR
Sbjct: 182 TKTKLGNTEVKGFVQRVVNDRLGAWFEQNPAEGREIIRKATAAASARIAARKARDLARNR 241

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K  +    LPGKL+DC        E++IVEGDSAGGSAK  R+   QA+LP+RGKILNV 
Sbjct: 242 KGLLGGGGLPGKLSDCQSTNPEECEVYIVEGDSAGGSAKGGRDPKFQAILPIRGKILNVE 301

Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560
            A  +K+  N ++  ++ ALG      + EE LRY K++IM DADVDG HI +LLLT  +
Sbjct: 302 KARIDKVLQNNEVQAIISALGTGIHEDFDEEKLRYHKIVIMADADVDGQHIRTLLLTLLF 361

Query: 561 QEMYDLI 567
           + M  LI
Sbjct: 362 RFMRPLI 368


>gi|238767804|dbj|BAH66663.1| DNA gyrase subunit beta [Aeromonas sp. No. 32]
 gi|238768216|dbj|BAH66671.1| DNA gyrase subunit beta [Aeromonas sp. No. 14-2]
 gi|238768228|dbj|BAH66677.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768230|dbj|BAH66678.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768234|dbj|BAH66680.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768240|dbj|BAH66683.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768242|dbj|BAH66684.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768244|dbj|BAH66685.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768246|dbj|BAH66686.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768252|dbj|BAH66689.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768294|dbj|BAH66710.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768308|dbj|BAH66717.1| DNA gyrase subunit beta [Aeromonas sp. KYO28]
 gi|238768312|dbj|BAH66719.1| DNA gyrase subunit beta [Aeromonas sp. KYO562]
 gi|238768324|dbj|BAH66725.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768348|dbj|BAH66737.1| DNA gyrase subunit beta [Aeromonas sp. KC5]
 gi|238768402|dbj|BAH66764.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768404|dbj|BAH66765.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768416|dbj|BAH66771.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768420|dbj|BAH66773.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768422|dbj|BAH66774.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768434|dbj|BAH66780.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768444|dbj|BAH66785.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768448|dbj|BAH66787.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768456|dbj|BAH66791.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768466|dbj|BAH66796.1| DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 338

 Score =  167 bits (422), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 120/349 (34%), Positives = 188/349 (53%), Gaps = 16/349 (4%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F    L 
Sbjct: 2   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTL-FHYEILA 59

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F
Sbjct: 60  KRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVF 112

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
              TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +
Sbjct: 113 HFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMD 169

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                 K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +   
Sbjct: 170 KEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLA 229

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +
Sbjct: 230 DFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALS 289

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 290 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEV 338


>gi|115381562|gb|ABI96463.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi B]
 gi|115381566|gb|ABI96465.1| gyrase B [Salmonella enterica subsp. enterica serovar Java]
          Length = 323

 Score =  167 bits (422), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 114/330 (34%), Positives = 178/330 (53%), Gaps = 14/330 (4%)

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
               +K GT + F P  + F +   F+   L K  +  ++L+  V       ++  E   
Sbjct: 4   TGDTDKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--- 60

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
               + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I
Sbjct: 61  ----DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENI 113

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV 
Sbjct: 114 YCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVK 173

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R
Sbjct: 174 VPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAAR 233

Query: 434 KQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           + R    RK A+    LPGKLADC +     +EL++VEGDSAGG AKQ RNR NQA+LPL
Sbjct: 234 RAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGFAKQGRNRKNQAILPL 293

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           +GKILNV  A  +K+ ++Q++  L+ ALGC
Sbjct: 294 KGKILNVEKARFDKMLSSQEVATLITALGC 323


>gi|238768366|dbj|BAH66746.1| DNA gyrase subunit beta [Aeromonas sp. KC10]
          Length = 338

 Score =  167 bits (422), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 120/349 (34%), Positives = 188/349 (53%), Gaps = 16/349 (4%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F    L 
Sbjct: 2   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEILA 59

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F
Sbjct: 60  KRLRELSFLNSGVSIRLQDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVF 112

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
              TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +
Sbjct: 113 HFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMD 169

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                 K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +   
Sbjct: 170 KEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLA 229

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +
Sbjct: 230 DFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALS 289

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 290 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEV 338


>gi|118197159|dbj|BAF37049.1| gyrase subunit B [Xanthomonas albilineans]
          Length = 353

 Score =  167 bits (422), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 126/363 (34%), Positives = 198/363 (54%), Gaps = 14/363 (3%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS++L + + +    + Q++S G  L+PL++ E     RGT + F P  K F +   F 
Sbjct: 1   ALSEKLLLDIFQGGFHYQQEYSHGAALAPLKQLETSTK-RGTTLRFWPSVKAFNNNVEFH 59

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L +  +  ++L+  VK   + ++          +++F++ GG++++++     ++ +
Sbjct: 60  YDILARRLRELSFLNSGVKIVLADERG------EGRRDDFHYEGGIRSFVEHLAHLKTPL 113

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
              + +   E  G    TVE A+ W +     +  + N I   +GGTH +G R ALTR +
Sbjct: 114 HPNVISVSGEHNGI---TVEVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRGALTRVL 170

Query: 343 KKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             Y E     +   I++  DD+    + +LSV + +P F+ QTK KLVS D +  VENA 
Sbjct: 171 NNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPAVENAF 230

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQN 459
               + +L +NP EA  +   +++ +  R   RK R+   RK A+    LPGKLADC + 
Sbjct: 231 GARLEEFLQENPNEAKAIAGKIVDAARAREAARKARDLTRRKGALDIAGLPGKLADCQEK 290

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
               +ELFIVEGDSAGGSAKQ RNR NQAVLPLRGKILNV  A  +++  + Q+  L+ A
Sbjct: 291 DPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLASDQVGTLITA 350

Query: 520 LGC 522
           LG 
Sbjct: 351 LGT 353


>gi|207678283|gb|ACI25155.1| DNA gyrase B [Phaeobacter sp. M8-4.1]
 gi|207678285|gb|ACI25156.1| DNA gyrase B [Phaeobacter sp. M8-4.3]
          Length = 343

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 109/351 (31%), Positives = 176/351 (50%), Gaps = 13/351 (3%)

Query: 170 HVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLK 229
            + + R       +F RG     L+   +  ++ GT + F      F +   +    L K
Sbjct: 1   ELRIWRDGKEHVARFERGDTAEHLKVVGECGDQTGTEVRFLASTDTFSNL-EYSFETLEK 59

Query: 230 MTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFT 289
             +  A+L+  V+     ++          + E ++ GG+K +++    ++S +      
Sbjct: 60  RLRELAFLNSGVRIILIDER-----PAERLEVELFYEGGVKEFVKYLDRSKSPVMEAPIY 114

Query: 290 GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
              +K       VE A+ W +     +  + N I   +GGTH +G R ALTR I  YA+ 
Sbjct: 115 ITGDKDDI---GVEVAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRTINNYAQS 171

Query: 349 TQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
           +    K  +S   DD       +LSV + +P+F+ QTK KLVS + +  VE+ + +    
Sbjct: 172 SGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVNEKLAE 231

Query: 407 YLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTE 465
           +  +NP +A +++  +IE +  R   RK RE   RKTA+    L GKL DCS+     TE
Sbjct: 232 WFEENPNQAKQIVGKIIEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSEKDPSKTE 291

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +F+VEGDSAGGSA+  R+R  QA+LPLRGKILNV  A  +++  +Q+I +L
Sbjct: 292 VFLVEGDSAGGSAQTGRDRMTQAILPLRGKILNVERARFDRMLGSQEIGNL 342


>gi|207107900|dbj|BAG71962.1| DNA gyrase subunit B [Gordonia hirsuta]
          Length = 408

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 128/414 (30%), Positives = 205/414 (49%), Gaps = 37/414 (8%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           GISVVNALS ++ + + R   I++Q+++   P   ++  E         + F PDP IF 
Sbjct: 1   GISVVNALSTKVQLEIKRDGHIWTQEYTDATPGPLIKVGETTGTGT--TVRFWPDPTIFE 58

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------------------------E 250
               F+A  + +  Q  A+L+  +    + D+                           E
Sbjct: 59  TT-EFNAETVARRLQEMAFLNKGLTMTLTDDRISVEDAVVEATMDVDGPEQAETIKSEEE 117

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
            AE+        +++P GL  Y++     ++ I   +     +  G     VE A+ W  
Sbjct: 118 KAEQVVTVRTRTYHYPDGLVDYIKHLNRTKTPIHQTVVGFDVKGTGH---EVEIAMQWNS 174

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
                + ++ NTI T EGGTHE G R ALT  + KYA   +   ++   +  DD+     
Sbjct: 175 GYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLVKEKDGKLSGDDIREGLA 234

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            ++SV + +P+F GQTKTKL + + +  V+ A  +   H+   NP EA  ++   ++ ++
Sbjct: 235 AVISVKVADPQFEGQTKTKLGNTEVKSFVQKACNEHLGHWFEANPAEAKIIVRKAVDSAQ 294

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            RL  R+ RE V RKTA     LPGKLADC  N     E++IVEGDSAGGSAK  R+  +
Sbjct: 295 ARLAARRARELVRRKTATDIGGLPGKLADCRSNDPSKCEVYIVEGDSAGGSAKSGRDSMH 354

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           QA+LP+RGKI+NV  A  +++  N ++  ++ A G     ++    LRY K+++
Sbjct: 355 QAILPIRGKIINVEKARIDRVLKNVEVQSIITAFGTGIHDEFDLAKLRYHKIVL 408


>gi|164456671|dbj|BAF97828.1| gyrase B subunit [Vibrio gallicus]
          Length = 356

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 125/365 (34%), Positives = 189/365 (51%), Gaps = 14/365 (3%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           + +T+ R     +Q +  G P +PL       +K GT I F P  + F +   F    L 
Sbjct: 1   VTLTINRGGKTHAQTYCHGEPQAPLAVIGD-SDKTGTEIRFWPSEETFTNI-EFHYEILA 58

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           K  +  ++L+  V      ++E        + + F F GG++ ++     N++ I  +IF
Sbjct: 59  KRLRELSFLNSGVSIKLIDERE------EDKSDHFMFEGGIQAFVDHLNINKTPIIQKIF 112

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
              +E+      TVE A+ W +     I  + N I   +GGTH +G R ALTR +  + +
Sbjct: 113 HFDSERDD--GITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRSALTRTLNTFMD 170

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                 K   S   DD       ++SV + +P+F+ QTK KLVS + +  VE+A+ +   
Sbjct: 171 KEGFSKKAKASTSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLS 230

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +LV+NP EA  +   +I+ +  R   RK R    RK A+    LPGKLADC +     +
Sbjct: 231 EFLVENPGEAKIVCGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 290

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC  
Sbjct: 291 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 350

Query: 525 RSQYR 529
                
Sbjct: 351 GRDEY 355


>gi|195926972|dbj|BAG68373.1| gyrase B [Campylobacter helveticus]
          Length = 339

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 125/353 (35%), Positives = 181/353 (51%), Gaps = 18/353 (5%)

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L  TV R   I+ Q+FS+G+  S      K +    T I F PD  IF    
Sbjct: 1   VVNALSKKLVATVERDGEIYRQEFSKGLIASEFGVVGKTQK-TSTTIEFWPDESIFEVT- 58

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   L K  +  AYL+ ++   +  ++       + + E F+F GG+  ++     N+
Sbjct: 59  EFDYEILAKRFRELAYLNPKITINFKDNR-------VGKSESFHFEGGISQFVS--DLNK 109

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALT 339
               ++      ++       VE A+ + E   E   S+ N I T +GGTHE+G R+ LT
Sbjct: 110 KQALTKPIFFSVDEDNV---NVEVALLYNETYTENLLSFVNNIRTPDGGTHEAGFRMGLT 166

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y E      ++   I  +D+    + I+SV + EP+F GQTK KL S   +  V 
Sbjct: 167 RVISNYIEANASAREKDNKITGEDVREGLIAIVSVKVPEPQFEGQTKGKLGSSYVRPIVN 226

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
            A  +    Y  +NPIEA  ++   +  +  R   +K RE   +K ++    LPGKLADC
Sbjct: 227 KASFEYLSKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADC 286

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
                  +E+++VEGDSAGGSAKQ R R+ QA+LPLRGKILNV  A  +KI  
Sbjct: 287 QSKDPSESEIYLVEGDSAGGSAKQGRERAFQAILPLRGKILNVEKARLDKILK 339


>gi|327343587|dbj|BAK09538.1| DNA gyrase subunit B [endosymbiont of Nysius plebeius]
 gi|327343589|dbj|BAK09539.1| DNA gyrase subunit B [endosymbiont of Nysius plebeius]
 gi|327343591|dbj|BAK09540.1| DNA gyrase subunit B [endosymbiont of Nysius plebeius]
 gi|327343593|dbj|BAK09541.1| DNA gyrase subunit B [endosymbiont of Nysius plebeius]
 gi|327343595|dbj|BAK09542.1| DNA gyrase subunit B [endosymbiont of Nysius plebeius]
 gi|327343597|dbj|BAK09543.1| DNA gyrase subunit B [endosymbiont of Nysius plebeius]
 gi|327343599|dbj|BAK09544.1| DNA gyrase subunit B [endosymbiont of Nysius plebeius]
 gi|327343601|dbj|BAK09545.1| DNA gyrase subunit B [endosymbiont of Nysius plebeius]
 gi|327343603|dbj|BAK09546.1| DNA gyrase subunit B [endosymbiont of Nysius plebeius]
          Length = 321

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 111/332 (33%), Positives = 167/332 (50%), Gaps = 15/332 (4%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD  +Y++SGGLHGVGISVVNALS +L + + RQ  I+ Q ++ G+P + LE   +  
Sbjct: 1   GKFDELSYKVSGGLHGVGISVVNALSQKLELIIKRQGKIYRQLYNTGVPQTTLEIIGET- 59

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
           N+ GT I F P+P IF     F    L+K  +  A+L+  +      ++           
Sbjct: 60  NQTGTYIRFWPNPLIFQKNIEFKYDILVKRIRELAFLNPGLSISIQDNRINI-------H 112

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYC 319
             F   GG+K ++    +N+  I   IF    EK      +VE A+ W          + 
Sbjct: 113 HSFQEDGGIKAFVAFLSKNKIPIHPNIFYFAAEKDKI---SVEIALHWTNTFQNHIYCFT 169

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH SG R A+TR I  Y +      K  ++II DD     V I+S+    P
Sbjct: 170 NNIPQRDGGTHLSGFRSAITRTINTYIDREGYNKKSKVNIIGDDTREGIVAIVSIKAHNP 229

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F+ QTK KLVS + +  VE  + +    YL+++P +A  ++  +I  +  R   RK RE
Sbjct: 230 KFSSQTKDKLVSSEIKSAVETLMNEYLIQYLLEHPQDAKSIVGKIISAARTREAARKVRE 289

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFI 468
            + +K  +    L GKLADC +      EL++
Sbjct: 290 IIRKKGTLDLSILSGKLADCQEKNPILNELYL 321


>gi|115381404|gb|ABI96384.1| gyrase B [Salmonella enterica subsp. houtenae]
 gi|115381406|gb|ABI96385.1| gyrase B [Salmonella enterica subsp. enterica serovar Kedougou]
 gi|115381408|gb|ABI96386.1| gyrase B [Salmonella enterica subsp. enterica serovar Kedougou]
 gi|115381410|gb|ABI96387.1| gyrase B [Salmonella enterica subsp. enterica serovar Kedougou]
 gi|115381412|gb|ABI96388.1| gyrase B [Salmonella enterica subsp. enterica serovar Muenchen]
 gi|115381414|gb|ABI96389.1| gyrase B [Salmonella enterica subsp. enterica serovar Muenchen]
 gi|115381418|gb|ABI96391.1| gyrase B [Salmonella enterica subsp. enterica serovar Zanzibar]
 gi|115381420|gb|ABI96392.1| gyrase B [Salmonella enterica subsp. enterica serovar Virchow]
 gi|115381422|gb|ABI96393.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|115381424|gb|ABI96394.1| gyrase B [Salmonella enterica subsp. enterica serovar Blockley]
 gi|115381426|gb|ABI96395.1| gyrase B [Salmonella enterica subsp. enterica serovar Agona]
 gi|115381428|gb|ABI96396.1| gyrase B [Salmonella enterica subsp. enterica serovar Saintpaul]
 gi|115381430|gb|ABI96397.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|115381432|gb|ABI96398.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|115381434|gb|ABI96399.1| gyrase B [Salmonella enterica subsp. enterica serovar Hadar]
 gi|115381436|gb|ABI96400.1| gyrase B [Salmonella enterica subsp. enterica serovar Saintpaul]
 gi|115381438|gb|ABI96401.1| gyrase B [Salmonella enterica subsp. enterica serovar Blockley]
 gi|115381440|gb|ABI96402.1| gyrase B [Salmonella enterica subsp. enterica serovar Blockley]
 gi|115381442|gb|ABI96403.1| gyrase B [Salmonella enterica subsp. enterica serovar Newport]
 gi|115381444|gb|ABI96404.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|115381446|gb|ABI96405.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|115381448|gb|ABI96406.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|115381450|gb|ABI96407.1| gyrase B [Salmonella enterica subsp. enterica serovar Infantis]
 gi|115381452|gb|ABI96408.1| gyrase B [Salmonella enterica subsp. enterica serovar Newport]
 gi|115381454|gb|ABI96409.1| gyrase B [Salmonella enterica subsp. enterica serovar Virchow]
 gi|115381456|gb|ABI96410.1| gyrase B [Salmonella enterica subsp. enterica serovar Virchow]
 gi|115381460|gb|ABI96412.1| gyrase B [Salmonella enterica subsp. enterica serovar Heidelberg]
 gi|115381468|gb|ABI96416.1| gyrase B [Salmonella enterica subsp. enterica serovar Blockley]
 gi|115381480|gb|ABI96422.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|115381482|gb|ABI96423.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|115381484|gb|ABI96424.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|115381486|gb|ABI96425.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|115381488|gb|ABI96426.1| gyrase B [Salmonella enterica subsp. enterica serovar Hadar]
 gi|115381490|gb|ABI96427.1| gyrase B [Salmonella enterica subsp. enterica serovar Hadar]
 gi|115381492|gb|ABI96428.1| gyrase B [Salmonella enterica subsp. enterica serovar Hadar]
 gi|115381494|gb|ABI96429.1| gyrase B [Salmonella enterica subsp. enterica serovar Blockley]
 gi|115381496|gb|ABI96430.1| gyrase B [Salmonella enterica subsp. enterica serovar Agona]
 gi|115381498|gb|ABI96431.1| gyrase B [Salmonella enterica subsp. enterica serovar Agona]
 gi|115381500|gb|ABI96432.1| gyrase B [Salmonella enterica subsp. enterica serovar Agona]
 gi|115381502|gb|ABI96433.1| gyrase B [Salmonella enterica subsp. enterica serovar Saintpaul]
 gi|115381506|gb|ABI96435.1| gyrase B [Salmonella enterica subsp. enterica serovar Saintpaul]
 gi|115381508|gb|ABI96436.1| gyrase B [Salmonella enterica subsp. enterica serovar Newport]
 gi|115381510|gb|ABI96437.1| gyrase B [Salmonella enterica subsp. enterica serovar Goldcoast]
 gi|115381512|gb|ABI96438.1| gyrase B [Salmonella enterica subsp. enterica serovar Senftenberg]
 gi|115381516|gb|ABI96440.1| gyrase B [Salmonella enterica subsp. enterica serovar Panama]
 gi|115381520|gb|ABI96442.1| gyrase B [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|115381522|gb|ABI96443.1| gyrase B [Salmonella enterica subsp. enterica serovar Kottbus]
 gi|115381524|gb|ABI96444.1| gyrase B [Salmonella enterica subsp. enterica serovar Albany]
 gi|115381528|gb|ABI96446.1| gyrase B [Salmonella enterica subsp. enterica serovar Kottbus]
 gi|115381530|gb|ABI96447.1| gyrase B [Salmonella enterica subsp. enterica serovar Coeln]
 gi|115381532|gb|ABI96448.1| gyrase B [Salmonella enterica subsp. enterica serovar Hadar]
 gi|115381534|gb|ABI96449.1| gyrase B [Salmonella enterica subsp. enterica serovar Hadar]
 gi|115381536|gb|ABI96450.1| gyrase B [Salmonella enterica subsp. enterica serovar Kottbus]
 gi|115381540|gb|ABI96452.1| gyrase B [Salmonella enterica subsp. enterica serovar Panama]
 gi|115381542|gb|ABI96453.1| gyrase B [Salmonella enterica subsp. enterica serovar Panama]
 gi|115381544|gb|ABI96454.1| gyrase B [Salmonella enterica subsp. enterica serovar Saintpaul]
 gi|115381546|gb|ABI96455.1| gyrase B [Salmonella enterica subsp. enterica serovar Senftenberg]
 gi|115381548|gb|ABI96456.1| gyrase B [Salmonella enterica subsp. enterica serovar Senftenberg]
 gi|115381552|gb|ABI96458.1| gyrase B [Salmonella enterica subsp. enterica serovar Goldcoast]
 gi|115381560|gb|ABI96462.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi B]
 gi|115381564|gb|ABI96464.1| gyrase B [Salmonella enterica subsp. enterica serovar Java]
 gi|115381570|gb|ABI96467.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi]
 gi|115381572|gb|ABI96468.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhi]
 gi|115381584|gb|ABI96474.1| gyrase B [Salmonella enterica subsp. enterica serovar Pullorum]
 gi|115381586|gb|ABI96475.1| gyrase B [Salmonella enterica subsp. enterica serovar Gallinarum]
 gi|115381588|gb|ABI96476.1| gyrase B [Salmonella enterica subsp. enterica serovar Stanley]
 gi|115381590|gb|ABI96477.1| gyrase B [Salmonella enterica subsp. enterica serovar Agama]
 gi|115381592|gb|ABI96478.1| gyrase B [Salmonella enterica subsp. enterica serovar Agama]
 gi|115381594|gb|ABI96479.1| gyrase B [Salmonella enterica subsp. enterica serovar Reading]
 gi|115381596|gb|ABI96480.1| gyrase B [Salmonella enterica subsp. enterica serovar Reading]
 gi|115381598|gb|ABI96481.1| gyrase B [Salmonella enterica subsp. enterica serovar Binza]
 gi|115381600|gb|ABI96482.1| gyrase B [Salmonella enterica subsp. enterica serovar Binza]
 gi|115381602|gb|ABI96483.1| gyrase B [Salmonella enterica subsp. enterica serovar Orion]
 gi|115381604|gb|ABI96484.1| gyrase B [Salmonella enterica subsp. enterica serovar Orion]
 gi|115381606|gb|ABI96485.1| gyrase B [Salmonella enterica subsp. enterica serovar Give]
 gi|115381608|gb|ABI96486.1| gyrase B [Salmonella enterica subsp. enterica serovar Give]
 gi|115381610|gb|ABI96487.1| gyrase B [Salmonella enterica subsp. enterica serovar Kottbus]
 gi|115381612|gb|ABI96488.1| gyrase B [Salmonella enterica subsp. enterica serovar Kottbus]
 gi|115381614|gb|ABI96489.1| gyrase B [Salmonella enterica subsp. enterica serovar Rissen]
 gi|115381616|gb|ABI96490.1| gyrase B [Salmonella enterica subsp. enterica serovar Rissen]
 gi|115381618|gb|ABI96491.1| gyrase B [Salmonella enterica subsp. enterica serovar Fischerkietz]
 gi|115381620|gb|ABI96492.1| gyrase B [Salmonella enterica subsp. enterica serovar Coeln]
 gi|115381622|gb|ABI96493.1| gyrase B [Salmonella enterica subsp. enterica serovar Haifa]
 gi|115381626|gb|ABI96495.1| gyrase B [Salmonella enterica subsp. enterica serovar Rostock]
 gi|115381628|gb|ABI96496.1| gyrase B [Salmonella enterica subsp. enterica serovar Moscow]
 gi|115381630|gb|ABI96497.1| gyrase B [Salmonella enterica subsp. enterica serovar Naestved]
 gi|115381632|gb|ABI96498.1| gyrase B [Salmonella enterica subsp. enterica serovar Indiana]
 gi|115381634|gb|ABI96499.1| gyrase B [Salmonella enterica subsp. enterica serovar Indiana]
 gi|115381636|gb|ABI96500.1| gyrase B [Salmonella enterica subsp. enterica serovar Kentucky]
 gi|115381638|gb|ABI96501.1| gyrase B [Salmonella enterica subsp. enterica serovar Kentucky]
 gi|115381640|gb|ABI96502.1| gyrase B [Salmonella enterica subsp. enterica serovar
           Bovismorbificans]
          Length = 323

 Score =  166 bits (421), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 115/330 (34%), Positives = 179/330 (54%), Gaps = 14/330 (4%)

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
               +K GT + F P  + F +   F+   L K  +  ++L+  V       ++  E   
Sbjct: 4   TGDTDKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--- 60

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
               + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I
Sbjct: 61  ----DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENI 113

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV 
Sbjct: 114 YCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVK 173

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R
Sbjct: 174 VPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAAR 233

Query: 434 KQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           + R    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL
Sbjct: 234 RAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPL 293

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           +GKILNV  A  +K+ ++Q++  L+ ALGC
Sbjct: 294 KGKILNVEKARFDKMLSSQEVATLITALGC 323


>gi|115381416|gb|ABI96390.1| gyrase B [Salmonella enterica subsp. enterica serovar Muenchen]
          Length = 323

 Score =  166 bits (421), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 115/330 (34%), Positives = 179/330 (54%), Gaps = 14/330 (4%)

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
               +K GT + F P  + F +   F+   L K  +  ++L+  V       ++  E   
Sbjct: 4   TGDTDKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--- 60

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
               + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I
Sbjct: 61  ----DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENI 113

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV 
Sbjct: 114 YCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVK 173

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R
Sbjct: 174 VPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARGREAAR 233

Query: 434 KQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           + R    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL
Sbjct: 234 RAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPL 293

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           +GKILNV  A  +K+ ++Q++  L+ ALGC
Sbjct: 294 KGKILNVEKARFDKMLSSQEVATLITALGC 323


>gi|115381538|gb|ABI96451.1| gyrase B [Salmonella enterica subsp. enterica serovar Albany]
          Length = 323

 Score =  166 bits (421), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 114/330 (34%), Positives = 179/330 (54%), Gaps = 14/330 (4%)

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
               +K GT + F P  + F +   F+   L K  +  ++L+  V       ++  E   
Sbjct: 4   TGDTDKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--- 60

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
               + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I
Sbjct: 61  ----DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENI 113

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV 
Sbjct: 114 YCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVK 173

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + +P+F+ Q+K KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R
Sbjct: 174 VPDPKFSSQSKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAAR 233

Query: 434 KQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           + R    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL
Sbjct: 234 RAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPL 293

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           +GKILNV  A  +K+ ++Q++  L+ ALGC
Sbjct: 294 KGKILNVEKARFDKMLSSQEVATLITALGC 323


>gi|115381514|gb|ABI96439.1| gyrase B [Salmonella enterica subsp. enterica serovar
           Bovismorbificans]
          Length = 323

 Score =  166 bits (421), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 115/330 (34%), Positives = 179/330 (54%), Gaps = 14/330 (4%)

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
               +K GT + F P  + F +   F+   L K  +  ++L+  V       ++  E   
Sbjct: 4   TGDTDKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--- 60

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
               + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I
Sbjct: 61  ----DHFHYEGGIKAFVEFLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENI 113

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV 
Sbjct: 114 YCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVK 173

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R
Sbjct: 174 VPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAAR 233

Query: 434 KQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           + R    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL
Sbjct: 234 RAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPL 293

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           +GKILNV  A  +K+ ++Q++  L+ ALGC
Sbjct: 294 KGKILNVEKARFDKMLSSQEVATLITALGC 323


>gi|226323238|ref|ZP_03798756.1| hypothetical protein COPCOM_01010 [Coprococcus comes ATCC 27758]
 gi|225208428|gb|EEG90782.1| hypothetical protein COPCOM_01010 [Coprococcus comes ATCC 27758]
          Length = 117

 Score =  166 bits (421), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 48/90 (53%), Positives = 61/90 (67%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           +    YDA SI ILEGLE VR RPGMYIG    K L+HL  E++DNA+DE +AG+ + IE
Sbjct: 2   AKKTTYDAESITILEGLEAVRKRPGMYIGSVSTKGLNHLVYEIVDNAVDEHLAGFCSQIE 61

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           V+L+ +G  TV DNGRG+PV  H K   + 
Sbjct: 62  VTLEKDGSATVTDNGRGVPVGMHAKEYRRP 91


>gi|118197171|dbj|BAF37055.1| gyrase subunit B [Xanthomonas albilineans]
 gi|118197173|dbj|BAF37056.1| gyrase subunit B [Xanthomonas albilineans]
          Length = 353

 Score =  166 bits (421), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 126/363 (34%), Positives = 199/363 (54%), Gaps = 14/363 (3%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS++L + + +    + Q++S G  L+PL++  +   KRGT + F P  K F +   F 
Sbjct: 1   ALSEKLLLDIFQGGFHYQQEYSHGAALAPLKQL-ETSAKRGTTVRFWPSVKAFNNNVEFH 59

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L +  +  ++L+  VK   + ++          +++F++ GG++++++     ++ +
Sbjct: 60  YDILARRLRELSFLNSGVKIVLADERG------EGRRDDFHYEGGIRSFVEHLAHLKTPL 113

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
              + +   E  G    TVE A+ W +     +  + N I   +GGTH +G R ALTR +
Sbjct: 114 HPNVISVSGEHNGI---TVEVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRGALTRVL 170

Query: 343 KKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             Y E     +   I++  DD+    + +LSV + +P F+ QTK KLVS D +  VENA 
Sbjct: 171 NNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPAVENAF 230

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQN 459
               + +L +NP EA  +   +++ +  R   RK R+   RK A+    LPGKLADC + 
Sbjct: 231 GARLEEFLQENPNEAKAIAGKIVDAARAREAARKARDLTRRKGALDIAGLPGKLADCQEK 290

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
               +ELFIVEGDSAGGSAKQ RNR NQAVLPLRGKILNV  A  +++  + Q+  L+ A
Sbjct: 291 DPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLASDQVGTLITA 350

Query: 520 LGC 522
           LG 
Sbjct: 351 LGT 353


>gi|115381472|gb|ABI96418.1| gyrase B [Salmonella enterica subsp. enterica serovar Chester]
          Length = 323

 Score =  166 bits (421), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 115/330 (34%), Positives = 179/330 (54%), Gaps = 14/330 (4%)

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
               +K GT + F P  + F +   F+   L K  +  ++L+  V       ++  E   
Sbjct: 4   TGDTDKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--- 60

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
               + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I
Sbjct: 61  ----DHFHYEGGIKAFVEYLNQNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENI 113

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV 
Sbjct: 114 YCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVK 173

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R
Sbjct: 174 VPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAAR 233

Query: 434 KQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           + R    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL
Sbjct: 234 RAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPL 293

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           +GKILNV  A  +K+ ++Q++  L+ ALGC
Sbjct: 294 KGKILNVEKARFDKMLSSQEVATLITALGC 323


>gi|118197157|dbj|BAF37048.1| gyrase subunit B [Xanthomonas albilineans]
 gi|118197161|dbj|BAF37050.1| gyrase subunit B [Xanthomonas albilineans]
 gi|118197163|dbj|BAF37051.1| gyrase subunit B [Xanthomonas albilineans]
 gi|118197165|dbj|BAF37052.1| gyrase subunit B [Xanthomonas albilineans]
 gi|118197167|dbj|BAF37053.1| gyrase subunit B [Xanthomonas albilineans]
 gi|118197169|dbj|BAF37054.1| gyrase subunit B [Xanthomonas albilineans]
 gi|118197175|dbj|BAF37057.1| gyrase subunit B [Xanthomonas albilineans]
 gi|118197177|dbj|BAF37058.1| gyrase subunit B [Xanthomonas albilineans]
          Length = 353

 Score =  166 bits (421), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 126/363 (34%), Positives = 199/363 (54%), Gaps = 14/363 (3%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS++L + + +    + Q++S G  L+PL++  +   KRGT + F P  K F +   F 
Sbjct: 1   ALSEKLLLDIFQGGFHYQQEYSHGAALAPLKQL-ETSAKRGTTLRFWPSVKAFNNNVEFH 59

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L +  +  ++L+  VK   + ++          +++F++ GG++++++     ++ +
Sbjct: 60  YDILARRLRELSFLNSGVKIVLADERG------EGRRDDFHYEGGIRSFVEHLAHLKTPL 113

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
              + +   E  G    TVE A+ W +     +  + N I   +GGTH +G R ALTR +
Sbjct: 114 HPNVISVSGEHNGI---TVEVALQWTDSYQETMYCFTNNIPQKDGGTHLAGFRGALTRVL 170

Query: 343 KKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             Y E     +   I++  DD+    + +LSV + +P F+ QTK KLVS D +  VENA 
Sbjct: 171 NNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPAVENAF 230

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQN 459
               + +L +NP EA  +   +++ +  R   RK R+   RK A+    LPGKLADC + 
Sbjct: 231 GARLEEFLQENPNEAKAIAGKIVDAARAREAARKARDLTRRKGALDIAGLPGKLADCQEK 290

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
               +ELFIVEGDSAGGSAKQ RNR NQAVLPLRGKILNV  A  +++  + Q+  L+ A
Sbjct: 291 DPALSELFIVEGDSAGGSAKQGRNRRNQAVLPLRGKILNVERARFDRMLASDQVGTLITA 350

Query: 520 LGC 522
           LG 
Sbjct: 351 LGT 353


>gi|327493503|gb|AEA86362.1| topoisomerase II large subunit [Campylobacter phage NCTC12673]
          Length = 616

 Score =  166 bits (421), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 120/624 (19%), Positives = 228/624 (36%), Gaps = 73/624 (11%)

Query: 74  LHHLFSEVIDNAMDEVIA---GYANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKST 129
           L     E I N++DE       YAN I + +D + G +T+ DNGRG+P++ +        
Sbjct: 53  LTKQIDEAIQNSIDEFTRTGGKYANKISLKIDKDSGIITISDNGRGLPIDTY-------- 104

Query: 130 LEIILTTLHAGGKF----DNSTYEISGGLHGVGISVV-NALSDELHVTVARQNTIFSQKF 184
             +  T       +          I+ G HG+G  ++    S+    T+  +      K 
Sbjct: 105 -VMATTKFRTSSNYTFLEKEKKDRITIGAHGIGSKLIPLFSSEYQLTTITLEGDRGIVKC 163

Query: 185 SRGIPLSPLEKKE-KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
              + +   ++ +    +  G  I F+PD +    K                        
Sbjct: 164 LNNMSIIEHKEDKAPASSTHGVTIKFKPDFERLELKE----------------------- 200

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
               D  I   + +     +  PG   T+    ++ +       +   +         +E
Sbjct: 201 --INDDLINHIHALLINIAYSNPGIEFTFQGKLIKVKEFKEFIKYYSDSFSILQSDENLE 258

Query: 304 WAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLM 363
            AI   +E  +     N++  ++GG     +   +            +K  I+  +    
Sbjct: 259 LAIFPTDEY-KFVHIVNSLDLNKGGVALDYISNNIVNAFGNRLRKGYSK--ITNTAVKSR 315

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
           I  + IL          GQTK ++ +   +  +       F   L +N      ++E   
Sbjct: 316 IGVILILKNKKNLRFGGGQTKEEIKNTITELGIPTLKYTDFAELLFKNTHIKDPIIELYK 375

Query: 424 ERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483
            + E   R++   E          +      D          ++I EGDSA  S  QA  
Sbjct: 376 VQQELENRKQNTFERKEAKERFNPKFTKHTKDPKF-------MYIAEGDSALSSLIQAVG 428

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTD 543
           R   + LPL GK+ N     + ++  NQ++MD+V+A+G            +YE ++I TD
Sbjct: 429 RDCSSFLPLTGKLQNALKCSTAQLLKNQRVMDIVEAMGLGLPET------KYENMVIATD 482

Query: 544 ADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTK-SVYAHDEEHKQKILE 602
           AD+DG HIA L+    Y+   +L+ +  ++ +  P+  + Q  K   + +     QK  +
Sbjct: 483 ADLDGNHIACLITALVYKLQPNLLTEGRVYRLKTPIISVLQNDKLIKWYYTLGEYQKDQD 542

Query: 603 EFKKHGKGKIEISRFKGLGEMLASQLKETA-MDANKRTLLRVEINKDLNSLKDTQDSINK 661
              K+     E+   KGLG   A+  +     D     L ++E   +       +  + +
Sbjct: 543 NLPKNA----EVIYMKGLGSWSAANYRIVFAKDGIDNCLEKIEWKDND------EKVLEQ 592

Query: 662 LMGTK-ADERFKFIQERASFIDDV 684
            M     D R + +  ++  I+++
Sbjct: 593 WMSDNGIDFRKQILSTKSFNIENL 616


>gi|115381478|gb|ABI96421.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
          Length = 323

 Score =  166 bits (421), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 115/330 (34%), Positives = 179/330 (54%), Gaps = 14/330 (4%)

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
               +K GT + F P  + F +   F+   L K  +  ++L+  V       ++  E   
Sbjct: 4   TGDTDKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--- 60

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
               + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I
Sbjct: 61  ----DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENI 113

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV 
Sbjct: 114 YCFSNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVK 173

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R
Sbjct: 174 VPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAAR 233

Query: 434 KQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           + R    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL
Sbjct: 234 RAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPL 293

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           +GKILNV  A  +K+ ++Q++  L+ ALGC
Sbjct: 294 KGKILNVEKARFDKMLSSQEVATLITALGC 323


>gi|238768426|dbj|BAH66776.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768428|dbj|BAH66777.1| DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 338

 Score =  166 bits (421), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 120/349 (34%), Positives = 188/349 (53%), Gaps = 16/349 (4%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F    L 
Sbjct: 2   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSAG-TGTEVRFWPSPTIFSDTL-FHYEILA 59

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F
Sbjct: 60  KRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVF 112

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
              TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +
Sbjct: 113 HFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMD 169

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                 K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +   
Sbjct: 170 KEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLA 229

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +
Sbjct: 230 DFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALS 289

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 290 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEV 338


>gi|210062268|gb|ACJ06183.1| GyrB [Aeromonas veronii bv. sobria]
          Length = 338

 Score =  166 bits (421), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 122/350 (34%), Positives = 189/350 (54%), Gaps = 16/350 (4%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F  
Sbjct: 1   LSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPAIFSDTL-FHY 58

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             L K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I 
Sbjct: 59  EILAKRLRELSFLNSGVSIRLQDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIH 111

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
            ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR + 
Sbjct: 112 PKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLN 168

Query: 344 KYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ 
Sbjct: 169 SYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMG 228

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNI 460
           +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +  
Sbjct: 229 EKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKD 288

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
              +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 PALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 338


>gi|238768376|dbj|BAH66751.1| DNA gyrase subunit beta [Aeromonas sp. MU1]
          Length = 338

 Score =  166 bits (421), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 120/349 (34%), Positives = 188/349 (53%), Gaps = 16/349 (4%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L +T+ R   ++ Q F  G P +PL++        GT + F P P IF D   +    L 
Sbjct: 2   LLLTIRRNGHVYEQTFHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFTDTL-YHYEILA 59

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F
Sbjct: 60  KRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVF 112

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
              TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +
Sbjct: 113 HFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMD 169

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                 K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +   
Sbjct: 170 KEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLA 229

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +
Sbjct: 230 DFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALS 289

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 290 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEV 338


>gi|238768276|dbj|BAH66701.1| DNA gyrase subunit beta [Aeromonas sobria]
 gi|238768280|dbj|BAH66703.1| DNA gyrase subunit beta [Aeromonas sobria]
 gi|238768340|dbj|BAH66733.1| DNA gyrase subunit beta [Aeromonas sp. KC1]
 gi|238768358|dbj|BAH66742.1| DNA gyrase subunit beta [Aeromonas sp. KC6]
 gi|238768362|dbj|BAH66744.1| DNA gyrase subunit beta [Aeromonas sp. KC8]
 gi|238768364|dbj|BAH66745.1| DNA gyrase subunit beta [Aeromonas sp. KC9]
 gi|238768410|dbj|BAH66768.1| DNA gyrase subunit beta [Aeromonas sobria]
          Length = 338

 Score =  166 bits (421), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 119/349 (34%), Positives = 188/349 (53%), Gaps = 16/349 (4%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   +    L 
Sbjct: 2   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFTDTL-YHYEILA 59

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F
Sbjct: 60  KRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVF 112

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
              TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +
Sbjct: 113 HFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMD 169

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                 K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +   
Sbjct: 170 KEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLA 229

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +
Sbjct: 230 DFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALS 289

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 290 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEV 338


>gi|183986198|gb|AAI66287.1| Unknown (protein for MGC:185751) [Xenopus (Silurana) tropicalis]
          Length = 240

 Score =  166 bits (421), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 85/226 (37%), Gaps = 36/226 (15%)

Query: 12  LPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE 71
             P     ++ + K  +  +       S    Y          LE + +RP  YIG  + 
Sbjct: 3   TDPLQPLENKTVGKVKKSDN----KRLSVERIYQKK-----TQLEHILLRPDTYIGSVEP 53

Query: 72  ----------------------KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFL 107
                                   L+ +F E++ NA D        + I+++++     +
Sbjct: 54  VTQQMWVFDEDEGLNCRDVTFVPGLYKIFDEILVNAADNKQRDPTMSCIKITINPESNTV 113

Query: 108 TVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSD 167
           +V +NG+GIPV  H K        +I   L     +D+   +++GG +G G  + N  S+
Sbjct: 114 SVWNNGKGIPVVEH-KVEKVFVPALIFGQLLTSSNYDDDQKKVTGGRNGYGAKLCNIFSN 172

Query: 168 ELHVT--VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           +  V         +F Q ++  +  +   K +    +  T ITF+P
Sbjct: 173 KFTVETACREYKKVFKQTWTDNMSDAADAKIKPFDGEDYTCITFQP 218


>gi|115381474|gb|ABI96419.1| gyrase B [Salmonella enterica subsp. enterica serovar Choleraesuis]
          Length = 323

 Score =  166 bits (421), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 115/330 (34%), Positives = 180/330 (54%), Gaps = 14/330 (4%)

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
               +K GT + F P  + F +   F+   L K  +  ++L+  V       ++  E   
Sbjct: 4   TGDTDKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--- 60

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
               + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I
Sbjct: 61  ----DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENI 113

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV 
Sbjct: 114 YCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVK 173

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R
Sbjct: 174 VPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAAR 233

Query: 434 KQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           + R +  RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL
Sbjct: 234 RAREKTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPL 293

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           +GKILNV  A  +K+ ++Q++  L+ ALGC
Sbjct: 294 KGKILNVEKARFDKMLSSQEVARLITALGC 323


>gi|238768458|dbj|BAH66792.1| DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 338

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 120/349 (34%), Positives = 188/349 (53%), Gaps = 16/349 (4%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F    L 
Sbjct: 2   LLLTIRRNGHVYEQTYYLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEILA 59

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F
Sbjct: 60  KRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVF 112

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
              TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +
Sbjct: 113 HFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMD 169

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                 K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +   
Sbjct: 170 KEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLA 229

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +
Sbjct: 230 DFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALS 289

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 290 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEV 338


>gi|159576555|dbj|BAF92826.1| DNA gyrase subunit B [Halomonas sp. CA3-1I]
          Length = 324

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 117/336 (34%), Positives = 174/336 (51%), Gaps = 16/336 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS+EL +T+ R   +  Q +  G+P SPL    K     G+R+
Sbjct: 1   YKVSGGLHGVGVSVVNALSEELKLTIWRAGQVHEQIYHHGVPASPLSIVGKTEK-SGSRV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            FRP P+ F +   F    L K  +  ++L+  V      ++   E       E F++ G
Sbjct: 60  HFRPSPETFAN-IEFHYDILAKRLRELSFLNSGVAIRLMDERSGKE-------ELFHYDG 111

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           GLK ++     N+++++         + G     VE A+ W +     I  Y N I   +
Sbjct: 112 GLKAFVDHLNTNKTVLNPVFHFSVEREDGV---GVEVAMQWNDTFAENIFCYTNNIPQRD 168

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R +LTR +  Y E      K  +S   DD       I+SV + +P+F+ QTK
Sbjct: 169 GGTHLAGFRASLTRSLNNYIEAEGLLKKAKVSTSGDDAREGLTAIISVKVPDPKFSSQTK 228

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTA 443
            KLVS + +  VE  +   F  YLV+ P EA  ++  +++        R+ +    RK A
Sbjct: 229 EKLVSSEVKTAVEQEMGRQFSDYLVERPNEAKAIVNKMLDAARAREAARKARDMTRRKGA 288

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADC +     +EL++VEGDSAGGSAK
Sbjct: 289 LDIAGLPGKLADCQEKDPSLSELYLVEGDSAGGSAK 324


>gi|307343764|emb|CBJ19487.1| gyrase B subunit [Micromonospora coriariae]
          Length = 348

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 100/354 (28%), Positives = 178/354 (50%), Gaps = 9/354 (2%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V + +  +++ Q ++   P    +   +  +  G+ ++F PDP +F     FD   + + 
Sbjct: 1   VEIHKSGSVWRQHYTNSKPSPLEK--GEATDLTGSAVSFWPDPDVFETI-DFDFQTIYRR 57

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            Q  A+L+  +      ++   ++ G   +  F + GG+  +++    +++ +   +   
Sbjct: 58  LQEMAFLNRGITIHLLDERVAEDEDGKTREVTFRYDGGIADFVRHLNASKNPMHKTVVEF 117

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             E++G    ++E A+ W E     + ++ N I T EGGTHE G R ALT  + +Y    
Sbjct: 118 GAEEEG---MSLEIAMQWNESYGESVYTFANNINTHEGGTHEEGFRSALTSVVNRYGTDK 174

Query: 350 QNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
           +  +    +  +D+      I+SV +  P+F GQTKTKL +   +  V+    D    + 
Sbjct: 175 KLLKGDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWF 234

Query: 409 VQNPIEATKLLE-WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
            +NP EA  +++            ++ ++   RK+ +    +PGKLADC       +E+F
Sbjct: 235 DRNPAEAKTIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVF 294

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
           IVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG
Sbjct: 295 IVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALG 348


>gi|115381470|gb|ABI96417.1| gyrase B [Salmonella enterica subsp. enterica serovar Kedougou]
          Length = 323

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 115/330 (34%), Positives = 179/330 (54%), Gaps = 14/330 (4%)

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
               +K GT + F P  + F +   F+   L K  +  ++L+  V       ++  E   
Sbjct: 4   TGDTDKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--- 60

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
               + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I
Sbjct: 61  ----DHFHYEGGIKAFVEYLKQNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENI 113

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV 
Sbjct: 114 YCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVK 173

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R
Sbjct: 174 VPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAAR 233

Query: 434 KQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           + R    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL
Sbjct: 234 RAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPL 293

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           +GKILNV  A  +K+ ++Q++  L+ ALGC
Sbjct: 294 KGKILNVEKARFDKMLSSQEVATLITALGC 323


>gi|170177808|gb|ACB10230.1| GyrB [Aeromonas aquariorum]
          Length = 339

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 120/350 (34%), Positives = 188/350 (53%), Gaps = 16/350 (4%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K 
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTL-FHYEILAKR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F  
Sbjct: 59  LRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHF 111

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +  
Sbjct: 112 TTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKE 168

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +
Sbjct: 169 DYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADF 228

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
           L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL
Sbjct: 229 LLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSEL 288

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L
Sbjct: 289 YIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTL 338


>gi|115381576|gb|ABI96470.1| gyrase B [Salmonella enterica subsp. enterica serovar Albany]
          Length = 323

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 115/330 (34%), Positives = 178/330 (53%), Gaps = 14/330 (4%)

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
               +K GT + F P  + F +   F+   L K  +  ++L+  V       ++  E   
Sbjct: 4   TGDTDKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--- 60

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
               + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I
Sbjct: 61  ----DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENI 113

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV 
Sbjct: 114 YCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVK 173

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R
Sbjct: 174 VPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAAR 233

Query: 434 KQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           + R    RK A+    LPGKLADC +     +EL +VEGDSAGGSAKQ RNR NQA+LPL
Sbjct: 234 RAREMTRRKGALDLAGLPGKLADCQERDPALSELILVEGDSAGGSAKQGRNRKNQAILPL 293

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           +GKILNV  A  +K+ ++Q++  L+ ALGC
Sbjct: 294 KGKILNVEKARFDKMLSSQEVATLITALGC 323


>gi|115381462|gb|ABI96413.1| gyrase B [Salmonella enterica subsp. enterica serovar Coeln]
          Length = 323

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 115/330 (34%), Positives = 180/330 (54%), Gaps = 14/330 (4%)

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
               +K GT + F P  + F +   F+   L K  +  ++L+  V       ++  E   
Sbjct: 4   TGDTDKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--- 60

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
               + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I
Sbjct: 61  ----DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENI 113

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV 
Sbjct: 114 YCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVK 173

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R
Sbjct: 174 VPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAAR 233

Query: 434 KQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           + R    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL
Sbjct: 234 RAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPL 293

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           +GKILNV  A  +K+ ++Q++  L++ALGC
Sbjct: 294 KGKILNVEKARFDKMLSSQEVATLMRALGC 323


>gi|238768378|dbj|BAH66752.1| DNA gyrase subunit beta [Aeromonas sp. MU2]
          Length = 338

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 121/349 (34%), Positives = 189/349 (54%), Gaps = 16/349 (4%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F    L 
Sbjct: 2   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEILA 59

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I S++F
Sbjct: 60  KRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHSKVF 112

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
              TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +
Sbjct: 113 HFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMD 169

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                 K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +   
Sbjct: 170 KEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLA 229

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +
Sbjct: 230 DFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALS 289

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 290 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEV 338


>gi|238767800|dbj|BAH66661.1| DNA gyrase subunit beta [Aeromonas sobria]
 gi|238768206|dbj|BAH66666.1| DNA gyrase subunit beta [Aeromonas sp. No. 23]
 gi|238768250|dbj|BAH66688.1| DNA gyrase subunit beta [Aeromonas sobria]
 gi|238768256|dbj|BAH66691.1| DNA gyrase subunit beta [Aeromonas sobria]
 gi|238768258|dbj|BAH66692.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768260|dbj|BAH66693.1| DNA gyrase subunit beta [Aeromonas sobria]
 gi|238768266|dbj|BAH66696.1| DNA gyrase subunit beta [Aeromonas sobria]
 gi|238768270|dbj|BAH66698.1| DNA gyrase subunit beta [Aeromonas sobria]
 gi|238768278|dbj|BAH66702.1| DNA gyrase subunit beta [Aeromonas sobria]
 gi|238768304|dbj|BAH66715.1| DNA gyrase subunit beta [Aeromonas sp. KYO559]
 gi|238768316|dbj|BAH66721.1| DNA gyrase subunit beta [Aeromonas sp. KYO044]
 gi|238768326|dbj|BAH66726.1| DNA gyrase subunit beta [Aeromonas sobria]
 gi|238768334|dbj|BAH66730.1| DNA gyrase subunit beta [Aeromonas veronii]
 gi|238768338|dbj|BAH66732.1| DNA gyrase subunit beta [Aeromonas veronii]
 gi|238768350|dbj|BAH66738.1| DNA gyrase subunit beta [Aeromonas sobria]
 gi|238768370|dbj|BAH66748.1| DNA gyrase subunit beta [Aeromonas sp. KC12]
 gi|238768374|dbj|BAH66750.1| DNA gyrase subunit beta [Aeromonas sp. KC14]
 gi|238768392|dbj|BAH66759.1| DNA gyrase subunit beta [Aeromonas sobria]
 gi|238768412|dbj|BAH66769.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768418|dbj|BAH66772.1| DNA gyrase subunit beta [Aeromonas sobria]
 gi|238768424|dbj|BAH66775.1| DNA gyrase subunit beta [Aeromonas sobria]
 gi|238768440|dbj|BAH66783.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768442|dbj|BAH66784.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768446|dbj|BAH66786.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768450|dbj|BAH66788.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768452|dbj|BAH66789.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|238768464|dbj|BAH66795.1| DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 338

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 120/349 (34%), Positives = 188/349 (53%), Gaps = 16/349 (4%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F    L 
Sbjct: 2   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPAIFSDTL-FHYEILA 59

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F
Sbjct: 60  KRLRELSFLNSGVSIRLQDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVF 112

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
              TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +
Sbjct: 113 HFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMD 169

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                 K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +   
Sbjct: 170 KEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLA 229

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +
Sbjct: 230 DFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALS 289

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 290 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEV 338


>gi|307343808|emb|CBJ19509.1| gyrase B subunit [Micromonospora sp. GUI19]
          Length = 347

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 102/352 (28%), Positives = 181/352 (51%), Gaps = 9/352 (2%)

Query: 173 VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQ 232
           + +   ++ Q+++   P    +   +  ++ G+ ++F PDP +F     FD   + +  Q
Sbjct: 2   IHKSGFVWRQQYNNSKPGPLDK--GETTDRTGSAVSFWPDPDVFETV-DFDFQTIYRRLQ 58

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             A+L+  ++     ++   E+ G   +  F++ GG+  +++    +++ I   +     
Sbjct: 59  EMAFLNRALRIHLLDERVAEEEDGRQREVTFFYEGGIADFVRHLNASKNPIHKTVVEFGA 118

Query: 293 EKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN 351
           E++G    ++E A+ W E     + ++ NTI T EGGTHE G R ALT  + +Y    + 
Sbjct: 119 EEEG---MSLEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSVVNRYGTDKKL 175

Query: 352 KR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            +    +  +D+      I+SV +  P+F GQTKTKL +   +  V+    D    +  +
Sbjct: 176 LKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWFDR 235

Query: 411 NPIEATKLLE-WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           NP EA  +++            ++ ++   RK+ +    +PGKLADC       +E+FIV
Sbjct: 236 NPAEAKMIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIV 295

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
           EGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG
Sbjct: 296 EGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALG 347


>gi|318066845|emb|CBY89134.1| DNA gyrase subunit B [Halomonas halocynthiae]
          Length = 349

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 121/360 (33%), Positives = 187/360 (51%), Gaps = 16/360 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +T+ R N +  Q +  G+P SPL+   +     G+R+ FRP  + F +
Sbjct: 1   VSVVNALSEELKLTIWRNNEVHEQVYHHGVPASPLKVVGQTEK-SGSRVHFRPSAETFEN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F++ GGL+ ++     
Sbjct: 60  I-EFHYEVLAKRLRELSFLNSGVAIRLLDERSGKE-------ELFHYEGGLRAFVDHLNS 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N+++++      +  + G     VE A+ W +     I  Y N I   +GG H +G R  
Sbjct: 112 NKTVLNPVFHFNEEREDGV---GVEVAMQWTDTFTENIFCYTNNIPQRDGGAHLAGFRAG 168

Query: 338 LTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      +  +    DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRTLNHYIEAEGLAGRAKVQTSGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVRTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  +   F  YL + P EA  ++  +I+ +  R   RK      RK A+    LPGKLA
Sbjct: 229 VEQEMGKLFSEYLTEKPNEAKAIVGKMIDAARAREAARKARDMTRRKGALDIAGLPGKLA 288

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 289 DCQEKDPSLSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 348


>gi|115381558|gb|ABI96461.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi A]
          Length = 323

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 113/330 (34%), Positives = 178/330 (53%), Gaps = 14/330 (4%)

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
               +K GT + F P  + F +   F+   L K  +  ++L+  V       ++  E   
Sbjct: 4   TGDTDKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--- 60

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
               + F++ GG+K +++   +N++ I   IF   TEK G     +E A+ W +     I
Sbjct: 61  ----DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GIEVALQWNDGFQENI 113

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV 
Sbjct: 114 YCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVK 173

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R
Sbjct: 174 VPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAAR 233

Query: 434 KQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           + R    RK A+    LPGKLADC +     +EL++VEGDSAGG AKQ RNR NQA+LPL
Sbjct: 234 RAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGFAKQGRNRKNQAILPL 293

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           +GKILNV  A  +K+ ++Q++  L+ ALGC
Sbjct: 294 KGKILNVEKARFDKMLSSQEVATLITALGC 323


>gi|66474609|gb|AAY46874.1| GyrB [Aeromonas caviae]
          Length = 371

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 107/382 (28%), Positives = 178/382 (46%), Gaps = 16/382 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVV ALSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P 
Sbjct: 1   HGVGVSVVLALSDKLLLTIRRDGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPT 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
           IF D   F    L K  +  ++L+  V      +++  E         F + GG+K +++
Sbjct: 60  IFSDSL-FHYEILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y +      K   +   DD+    + ++ + +R+PEF+ Q K K+VS  
Sbjct: 169 FRTALTRTLNNYMDKEDYSKKAKSAASGDDVREGMIAVIFLIVRDPEFSFQIKDKVVSSV 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR-KTAIRKLRLP 450
            +  +   + +      V+N  +A  ++  +I          + R ++R  +A++    P
Sbjct: 229 VKTGMVQEMYEKLADVGVENRGDAKLVVNKIIYGGHHGDNAGRARVLSRPISAVQIPGPP 288

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
               D  +     +EL+  +G   GG A+Q RNR NQA  PL+GKI NV  AG   + ++
Sbjct: 289 PARPDYDEKDRSLSELYESQGVFPGGFAQQGRNRMNQAKSPLKGKIRNVEKAGLVMMNSS 348

Query: 511 QQIMDLVQALGCRTRSQYREED 532
           Q    +    GC         D
Sbjct: 349 QGGGPVNTPPGCGMGRDEYNPD 370


>gi|115381624|gb|ABI96494.1| gyrase B [Salmonella enterica subsp. enterica serovar Blegdam]
          Length = 323

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 115/330 (34%), Positives = 179/330 (54%), Gaps = 14/330 (4%)

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
               +K GT + F P  + F +   F+   L K  +  ++L+  V       ++  E   
Sbjct: 4   TGDTDKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--- 60

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
               + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I
Sbjct: 61  ----DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENI 113

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV 
Sbjct: 114 YCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVK 173

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R
Sbjct: 174 VPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAAR 233

Query: 434 KQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           + R    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL
Sbjct: 234 RAREMTRRKGALDLGGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPL 293

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           +GKILNV  A  +K+ ++Q++  L+ ALGC
Sbjct: 294 KGKILNVEKARFDKMLSSQEVATLITALGC 323


>gi|115381504|gb|ABI96434.1| gyrase B [Salmonella enterica subsp. enterica serovar Saintpaul]
          Length = 323

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 115/330 (34%), Positives = 179/330 (54%), Gaps = 14/330 (4%)

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
               +K GT + F P  + F +   F+   L K  +  ++L+  V       ++  E   
Sbjct: 4   TGDTDKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--- 60

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
               + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I
Sbjct: 61  ----DPFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENI 113

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV 
Sbjct: 114 YCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVK 173

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R
Sbjct: 174 VPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAAR 233

Query: 434 KQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           + R    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL
Sbjct: 234 RAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPL 293

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           +GKILNV  A  +K+ ++Q++  L+ ALGC
Sbjct: 294 KGKILNVEKARFDKMLSSQEVATLITALGC 323


>gi|170783859|gb|ACB37403.1| DNA gyrase subunit B [Spiroplasma eriocheiris]
 gi|170783862|gb|ACB37405.1| DNA gyrase subunit B [Spiroplasma sp. CRAYFISH]
 gi|170783865|gb|ACB37407.1| DNA gyrase subunit B [Spiroplasma sp. SHRIMP]
          Length = 130

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 51/126 (40%), Positives = 66/126 (52%), Gaps = 10/126 (7%)

Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRIT--QGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
           TFFY+ M  LIE K +++  PPLF+IT  +  K  YA DE   +  L+  K     K E+
Sbjct: 1   TFFYRFMRPLIEDKRVYIALPPLFKITNLKTKKVSYAWDENELKTKLKHLKD----KFEL 56

Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674
            R+KGLGEM A QL ET MD   R L+ V I+         +  I  LMG  A +R  +I
Sbjct: 57  QRYKGLGEMNAEQLWETTMDPETRQLIAVTIDD----AAIAEKRIVTLMGDDAKKRKDWI 112

Query: 675 QERASF 680
            E   F
Sbjct: 113 DENVKF 118


>gi|115381458|gb|ABI96411.1| gyrase B [Salmonella enterica subsp. enterica serovar Hadar]
          Length = 323

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 115/330 (34%), Positives = 179/330 (54%), Gaps = 14/330 (4%)

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
               +K GT + F P  + F +   F+   L K  +  ++L+  V       ++  E   
Sbjct: 4   TGDTDKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--- 60

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
               + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I
Sbjct: 61  ----DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENI 113

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV 
Sbjct: 114 YCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSASGDDAREGLIAVVSVK 173

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R
Sbjct: 174 VPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAAR 233

Query: 434 KQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           + R    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL
Sbjct: 234 RAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPL 293

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           +GKILNV  A  +K+ ++Q++  L+ ALGC
Sbjct: 294 KGKILNVEKARFDKMLSSQEVATLITALGC 323


>gi|260495356|ref|ZP_05815483.1| DNA gyrase subunit B [Fusobacterium sp. 3_1_33]
 gi|260197134|gb|EEW94654.1| DNA gyrase subunit B [Fusobacterium sp. 3_1_33]
          Length = 299

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 96/308 (31%), Positives = 153/308 (49%), Gaps = 13/308 (4%)

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           +T LHAGGKF+N  Y++SGGLHGVG+SVVNALS+ L V V +  T+  QK+ RG P   +
Sbjct: 1   MTVLHAGGKFENDNYKVSGGLHGVGVSVVNALSEWLEVEVRKNGTVHYQKYHRGKPEEDV 60

Query: 194 EKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
           +       N+ GT + F+ D +IF     ++   L    +  AYL+  +    S  ++  
Sbjct: 61  KVIGTCDENEHGTTVRFKADGEIFETLV-YNYFTLSNRLKELAYLNKGLTIILSDLRKDE 119

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEE 311
           +K      E + F GG+  +L   +++ + I  + F    E+       V+    +   +
Sbjct: 120 KKE-----EIYKFDGGILDFLNEIVKDETTIIEKPFFVSAEQDNV---GVDVTFTYTTSQ 171

Query: 312 NPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369
           N  I S+ N I T EGGTH  G R ALT+ I    +       +   ++ +D+    VGI
Sbjct: 172 NEVIYSFVNDINTHEGGTHVQGFRTALTKVINDVGKAQGLLKDKDGKLMGNDIREGVVGI 231

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           +S  I +P+F GQTK KL + +    V   + +    +L  NP     ++E ++   + R
Sbjct: 232 ISTKIPQPQFEGQTKGKLGNSEVSGIVNTVVSNSLKIFLEDNPNITKIIIEKILNSKKAR 291

Query: 430 LRRRKQRE 437
              +K RE
Sbjct: 292 EAAQKARE 299


>gi|238768460|dbj|BAH66793.1| DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 338

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 120/349 (34%), Positives = 188/349 (53%), Gaps = 16/349 (4%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F    L 
Sbjct: 2   LLLTIRRNGHVYEQTYYLGEPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTL-FHYEILA 59

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F
Sbjct: 60  KRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVF 112

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
              TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +
Sbjct: 113 HFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMD 169

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                 K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +   
Sbjct: 170 KEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLA 229

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +
Sbjct: 230 DFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALS 289

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 290 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEV 338


>gi|307343816|emb|CBJ19513.1| gyrase B subunit [Micromonospora sp. GUI34]
          Length = 344

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 101/350 (28%), Positives = 174/350 (49%), Gaps = 9/350 (2%)

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
           + Q++    P    +   +  ++ G+ ++F PDP +F     FD   + +  Q  A+L+ 
Sbjct: 1   WRQQYHHSKPTPLEK--GEATDRTGSAVSFWPDPDVFETV-DFDFHTIYRRLQEMAFLTR 57

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            +      ++   ++ G   +  F++ GG+  +++    ++S I   +     E+ G   
Sbjct: 58  GLTIHLLDERVPEDEDGKTREVTFHYEGGIADFVRHLNASKSPIHKTVVEFGAEETG--- 114

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI- 357
            +VE A+ W E     + ++ N I T EGGTHE G R ALT  + +Y    +  +     
Sbjct: 115 MSVEIAMQWNESYGESVYTFANNINTHEGGTHEEGFRAALTSVVNRYGAEKKLLKGDERL 174

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             +D+      I+SV + +P+F GQTKTKL +   +  V+    +    +  +NP EA  
Sbjct: 175 SGEDIREGLAAIISVKLTDPQFEGQTKTKLGNTPVKGFVQRVCNESLVDWFDRNPAEAKI 234

Query: 418 LLE-WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           +++            ++ ++   RK+ +    +PGKLADC       +E+FIVEGDSAGG
Sbjct: 235 IIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGG 294

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS 526
           SAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG     
Sbjct: 295 SAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGIHD 344


>gi|159576584|dbj|BAF92839.1| DNA gyrase subunit B [Halomonas sp. S2-2]
          Length = 324

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 115/336 (34%), Positives = 173/336 (51%), Gaps = 16/336 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG+SVVNALS+EL +TV R   ++ Q +  G+P SPL+   K     GT++
Sbjct: 1   YKVCGGLHGVGVSVVNALSEELKLTVWRAGQVYEQIYHHGVPDSPLDVVGKTEK-SGTQV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+P  + F +   F    L K  +  ++L+  V      ++  AE       E F++ G
Sbjct: 60  NFKPSTETFAN-IEFHYDILAKRLRELSFLNSGVAIRLIDERSGAE-------ELFHYEG 111

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           GL+ ++     N++ ++           G     VE A+ W +     I  Y N I   +
Sbjct: 112 GLRAFVDHLNTNKTALNQIFHFETQRDDGI---AVEVAMQWNDTFSENIFCYTNNIPQHD 168

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK
Sbjct: 169 GGTHLAGFRAALTRTLNHYIESEGLLKKAKVNTSGDDAREGLTAIVSVKVPDPKFSSQTK 228

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTA 443
            KLVS + +  VE  +   F  YLV+ P EA  ++  +++        R+ +    RK A
Sbjct: 229 DKLVSSEVKTAVEQEMGRQFSDYLVERPNEAKAIVNKMLDAARAREAARKARDMTRRKGA 288

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADC +     +EL++VEGDSAGGSAK
Sbjct: 289 LDIAGLPGKLADCQEKDPSLSELYLVEGDSAGGSAK 324


>gi|285026259|dbj|BAI67858.1| DNA gyrase B [Rubritalea sabuli]
          Length = 360

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 112/364 (30%), Positives = 178/364 (48%), Gaps = 18/364 (4%)

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDA 224
           SD     V R   ++  +F RG    PLE   +   +K GT++TF PD  IF D   F+ 
Sbjct: 1   SDWFRAEVTRDGKVYQIQFERGKTTEPLEVVGEAPSSKTGTKVTFFPDATIFVDTIEFEF 60

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
            RL    +   +L+  +           E      KE F++  G++ +++    N++ + 
Sbjct: 61  DRLATRLRELTFLNPGLTIVLED-----ENPEKSRKETFFYARGIEEFVEQLGVNKTTVH 115

Query: 285 SEIFTGKTEKKGTHRGT---------VEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
                   ++K                +    + +   +    Y N+I   +GGTH +G 
Sbjct: 116 ESPVVLTGKRKVEIDYDGKTMEDDVFADVVFQYNDSYQDNILCYANSIPNADGGTHLTGF 175

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR I +YA+  +    +  S+  DD+    V ++SV +  P F+ QTK KLV+ + 
Sbjct: 176 RGALTRSINQYAKANKILKDKDPSLSGDDVREGIVCVISVKMPNPRFSSQTKDKLVNAEI 235

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
           +  V + + +    Y  +NP  A  +++  +  +  R   RK RE  RK+ +    LPGK
Sbjct: 236 EGVVSSIVYEGLQEYFEENPNLAKMIIDKAVNAARAREAARKARETVRKSVMSGGGLPGK 295

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS+     +E++IVEGDSAGGSAK  RNR+ QA+LPLRGK++NV  A   K   N++
Sbjct: 296 LADCSERDPAKSEIYIVEGDSAGGSAKSGRNRTTQAILPLRGKVINVEKARLHKALQNKE 355

Query: 513 IMDL 516
           I  +
Sbjct: 356 IQAM 359


>gi|285026257|dbj|BAI67857.1| DNA gyrase B [Rubritalea squalenifaciens]
          Length = 360

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 113/364 (31%), Positives = 178/364 (48%), Gaps = 18/364 (4%)

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDA 224
           SD     V R   ++  +F RG    PLE   +   +K GT+ITF PD  IF D   F+ 
Sbjct: 1   SDWFRAEVTRDGKVYQIQFERGKTTEPLEVVGEAPSSKTGTKITFFPDATIFVDTIEFEF 60

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
            RL    +   +L+  +           E      KE F++  G++ +++    N++ + 
Sbjct: 61  DRLATRLRELTFLNPGLTIVLED-----ENPEKSRKETFFYARGIEEFVEQLGVNKTTVH 115

Query: 285 SEIFTGKTEKKGTHRGT---------VEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
                   ++K                +    + +   +    Y N+I   +GGTH +G 
Sbjct: 116 ESPVVLTGKRKVEIDYDGKTMEDDVFADVVFQYNDSYQDNILCYANSIPNADGGTHLTGF 175

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR I +YA+  +    +  S+  DD+    V ++SV +  P F+ QTK KLV+ + 
Sbjct: 176 RGALTRSINQYAKANKILKDKDPSLSGDDVREGIVCVISVKMPNPRFSSQTKDKLVNAEI 235

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
           +  V + + +    Y  +NP  A  +++  +  +  R   RK RE  RK+ +    LPGK
Sbjct: 236 EGVVSSIVYEGLQEYFEENPNLAKMIIDKAVNAARAREAARKARETVRKSVMSGGGLPGK 295

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS+     +E++IVEGDSAGGSAK  RNR+ QA+LPLRGK++NV  A   K   N++
Sbjct: 296 LADCSERDPAKSEIYIVEGDSAGGSAKSGRNRTTQAILPLRGKVINVEKARLHKALQNKE 355

Query: 513 IMDL 516
           I  +
Sbjct: 356 IQAM 359


>gi|157060402|gb|ABV03207.1| GyrB [Chlamydia trachomatis]
 gi|157060404|gb|ABV03208.1| GyrB [Chlamydia trachomatis]
 gi|157060410|gb|ABV03211.1| GyrB [Chlamydia trachomatis]
 gi|157060426|gb|ABV03219.1| GyrB [Chlamydia trachomatis]
          Length = 393

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 77/164 (46%), Positives = 103/164 (62%), Gaps = 1/164 (0%)

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
              RLPGKL DC +      E++IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  
Sbjct: 1   DSARLPGKLIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARL 60

Query: 505 EKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563
           +K+  NQ+I  ++ ALGC           LRY+++IIMTDADVDG+HI +LLLTFFY+ M
Sbjct: 61  QKVFQNQEIGSIIAALGCGIGKDNFNLSKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHM 120

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607
             LIE + +++  PPL+R+++     Y   E+     L      
Sbjct: 121 SALIENECVYIAQPPLYRVSKKKDFRYILSEKEMDGYLLNLGTK 164



 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 9/97 (9%)

Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
            +     +++++  K  G+  IEI R+KGLGEM A QL +T M+  +RTL+RV +   + 
Sbjct: 303 CYT---LKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAV- 358

Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFI--DDVG 685
              +       LMG +   R +FI+  A  I  +++ 
Sbjct: 359 ---EADHIFTMLMGEEVPPRREFIKSHALSIRMNNLD 392


>gi|253762211|gb|ACT35557.1| gyrase B [Alishewanella sp. BL06]
          Length = 344

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 117/355 (32%), Positives = 190/355 (53%), Gaps = 15/355 (4%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L +T+ R+  + SQ +  G+P +PL    +  +  GT I F P P IF D   F    L 
Sbjct: 1   LELTIRRKGQVHSQIYHLGVPQAPLAVIGETED-SGTAIRFWPSPTIFSDIN-FHYDILA 58

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           K  +  ++L+  V    + ++         + + F + GG++ ++Q    +++ I  + F
Sbjct: 59  KRLRELSFLNSGVSIILTDER-------TDKTDHFKYDGGIEAFVQYLNRSKTSIHPKAF 111

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
               +++      VE A+ W +     +  + N I   +GGTH +G R ALTR +  Y +
Sbjct: 112 YFTDQRED--GIAVEVAMQWNDSYQENVFCFTNNIPQRDGGTHLAGFRGALTRVLNTYID 169

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                 K  +    DD       ++SV + +P+F+ QTK KLVS + +  VE+ + +  +
Sbjct: 170 QEGYAKKMKVQASGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVRSAVESVMAEKLN 229

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGT 464
            YL++NP +A  ++  +++ +  R   RK R    RK A+    LPGKLADC +     +
Sbjct: 230 EYLLENPGDAKIIVGKIVDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALS 289

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
           EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ A
Sbjct: 290 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 344


>gi|115381556|gb|ABI96460.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi A]
          Length = 323

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 114/330 (34%), Positives = 179/330 (54%), Gaps = 14/330 (4%)

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
               +K GT + F P  + F +   F+   L K  +  ++L+  V       ++  E   
Sbjct: 4   TGDTDKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--- 60

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
               + F++ GG+K +++   +N++ I   IF   TEK G     +E A+ W +     I
Sbjct: 61  ----DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GIEVALQWNDGFQENI 113

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV 
Sbjct: 114 YCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVK 173

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R
Sbjct: 174 VPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAAR 233

Query: 434 KQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           + R    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL
Sbjct: 234 RAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPL 293

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           +GKILNV  A  +K+ ++Q++  L+ ALGC
Sbjct: 294 KGKILNVEKARFDKMLSSQEVATLITALGC 323


>gi|115381582|gb|ABI96473.1| gyrase B [Salmonella enterica subsp. diarizonae]
          Length = 323

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 114/330 (34%), Positives = 179/330 (54%), Gaps = 14/330 (4%)

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
               +K GT + F P  + F +   F+   L K  +  ++L+  V       ++  E   
Sbjct: 4   TGDTDKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--- 60

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
               + F++ GG+K +++   +N++ I   IF   TEK G     V+ A+ W +     I
Sbjct: 61  ----DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVQVALQWNDGFQENI 113

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV 
Sbjct: 114 YCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVK 173

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R
Sbjct: 174 VPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAAR 233

Query: 434 KQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           + R    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL
Sbjct: 234 RAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPL 293

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           +GKILNV  A  +K+ ++Q++  L+ ALGC
Sbjct: 294 KGKILNVEKARFDKMLSSQEVATLITALGC 323


>gi|157060424|gb|ABV03218.1| GyrB [Chlamydia trachomatis]
          Length = 392

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 77/163 (47%), Positives = 103/163 (63%), Gaps = 1/163 (0%)

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
             RLPGKL DC +      E++IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  +
Sbjct: 1   SARLPGKLIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQ 60

Query: 506 KIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           K+  NQ+I  ++ ALGC           LRY+++IIMTDADVDG+HI +LLLTFFY+ M 
Sbjct: 61  KVFQNQEIGSIIAALGCGIGKDNFNLSKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHMS 120

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607
            LIE + +++  PPL+R+++     Y   E+     L      
Sbjct: 121 ALIENECVYIAQPPLYRVSKKKDFRYILSEKEMDGYLLNLGTK 163



 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 9/97 (9%)

Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
            +     +++++  K  G+  IEI R+KGLGEM A QL +T M+  +RTL+RV +   + 
Sbjct: 302 CYT---LKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAV- 357

Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFI--DDVG 685
              +       LMG +   R +FI+  A  I  +++ 
Sbjct: 358 ---EADHIFTMLMGEEVPPRREFIESHALSIRMNNLD 391


>gi|157060406|gb|ABV03209.1| GyrB [Chlamydia trachomatis]
 gi|157060408|gb|ABV03210.1| GyrB [Chlamydia trachomatis]
 gi|157060412|gb|ABV03212.1| GyrB [Chlamydia trachomatis]
 gi|157060414|gb|ABV03213.1| GyrB [Chlamydia trachomatis]
 gi|157060416|gb|ABV03214.1| GyrB [Chlamydia trachomatis]
 gi|157060418|gb|ABV03215.1| GyrB [Chlamydia trachomatis]
 gi|157060420|gb|ABV03216.1| GyrB [Chlamydia trachomatis]
 gi|157060422|gb|ABV03217.1| GyrB [Chlamydia trachomatis]
          Length = 392

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 77/163 (47%), Positives = 103/163 (63%), Gaps = 1/163 (0%)

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
             RLPGKL DC +      E++IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  +
Sbjct: 1   SARLPGKLIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQ 60

Query: 506 KIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
           K+  NQ+I  ++ ALGC           LRY+++IIMTDADVDG+HI +LLLTFFY+ M 
Sbjct: 61  KVFQNQEIGSIIAALGCGIGKDNFNLSKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHMS 120

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607
            LIE + +++  PPL+R+++     Y   E+     L      
Sbjct: 121 ALIENECVYIAQPPLYRVSKKKDFRYILSEKEMDGYLLNLGTK 163



 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 9/97 (9%)

Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
            +     +++++  K  G+  IEI R+KGLGEM A QL +T M+  +RTL+RV +   + 
Sbjct: 302 CYT---LKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAV- 357

Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFI--DDVG 685
              +       LMG +   R +FI+  A  I  +++ 
Sbjct: 358 ---EADHIFTMLMGEEVPPRREFIKSHALSIRMNNLD 391


>gi|195926960|dbj|BAG68367.1| gyrase B [Campylobacter curvus]
          Length = 339

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 123/353 (34%), Positives = 190/353 (53%), Gaps = 18/353 (5%)

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L +T+ R   ++ Q+F +GIP++ LE   K  N+ GT++ F  D  IF    
Sbjct: 1   VVNALSKKLILTIKRDGNVYRQEFQKGIPVTALETI-KTTNRTGTQVEFFVDDSIFEVT- 58

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   L K  +  AYL+ ++   +   ++          E ++F GGL++++    + +
Sbjct: 59  EFDREILAKRFRELAYLNPKITINFKDQRD-------GFNESYHFEGGLESFVTDMNKAQ 111

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALT 339
           ++  +  F+G     G     V++A+ + +   E   S+ N I T +GGTHE+G R  LT
Sbjct: 112 AVSKAVSFSG-----GEEDVMVDFALMYNDTYSENLLSFVNNIKTPDGGTHEAGFRAGLT 166

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y        ++   I  DD+    + ++SV + EP+F GQTK KL S   +  V+
Sbjct: 167 RVITNYIAANAAVREKDTKITGDDIREGLIAVISVKVPEPQFEGQTKGKLGSSYVKPIVQ 226

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456
             + D    Y  +NPIEA  ++   +  +  R   +K R+   +K  +    LPGKLADC
Sbjct: 227 KMVFDVLSKYFEENPIEARAIMNKALMAARGREAAKKARDLTRKKEGLSVGTLPGKLADC 286

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
               A  +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  +  +KI  
Sbjct: 287 QSKDASISELYLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSRLDKILK 339


>gi|159576572|dbj|BAF92834.1| DNA gyrase subunit B [Halomonas sulfidaeris]
          Length = 324

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 119/336 (35%), Positives = 173/336 (51%), Gaps = 16/336 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS EL +T+ RQ  +F Q +  G+P +PL    K     GTR+
Sbjct: 1   YKVSGGLHGVGVSVVNALSAELRLTIWRQGEVFEQMYRHGVPQAPLGVVGKTEK-SGTRV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            FRP P+ FG+   F    L K  +  ++L+  V      ++   E       E F++ G
Sbjct: 60  HFRPSPETFGN-IEFHFDILAKRLRELSFLNSGVAIRLLDERSGKE-------ELFHYEG 111

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           GL+ ++     N+S+I+           G     VE A+ W E     I  Y N I   +
Sbjct: 112 GLRAFVDHLNTNKSVINPVFHFNAVRDDGV---EVEVAMQWSEAFTENIFCYPNNIPQRD 168

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GG H +G R  LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK
Sbjct: 169 GGAHLAGFRAGLTRTLNNYIEAENLLKKAKVNTTGDDAREGLTAIISVKVPDPKFSSQTK 228

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTA 443
            KLVS + +  VE  +   F  YL++ P EA  ++  +++        R+ +    RK A
Sbjct: 229 DKLVSSEVKTAVEQEMSRLFSDYLIEKPNEAKAIVNKMLDAARAREAARKARDMTRRKGA 288

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADC +     +EL++VEGDSAGGSAK
Sbjct: 289 LDIAGLPGKLADCQEKDPSQSELYLVEGDSAGGSAK 324


>gi|318066847|emb|CBY89135.1| DNA gyrase subunit B [Halomonas halodenitrificans]
          Length = 349

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 129/360 (35%), Positives = 188/360 (52%), Gaps = 16/360 (4%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           ISVVNALS+EL +TV R  ++  Q +  G+P +PL    K  N  GTR+ FRP  + FG+
Sbjct: 1   ISVVNALSEELRLTVWRAGSVHEQLYRHGVPQAPLSAVGKTENA-GTRVHFRPSSETFGN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F++ GGLK ++     
Sbjct: 60  I-EFHFDILAKRLRELSFLNSGVAIRLIDERSGKE-------ELFHYEGGLKAFVDHLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N+++++         + G     VE A+ W +     I  Y N I   +GG H +G R A
Sbjct: 112 NKTVLNPVFHFNTEREDGV---GVEVAMQWSDSFNENIFCYTNNIPQRDGGAHLAGFRAA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  IS   DD       I+SV   +P+F+ QTK KLVS + +  
Sbjct: 169 LTRTLNGYIESEGLLKKSKISTAGDDAREGLTAIISVKAPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454
           VE  +      YL++ P EA  ++  +++ +  R   RK      RK A+    LPGKLA
Sbjct: 229 VEQEMSRLLGEYLIEKPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLA 288

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +ELF+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++ 
Sbjct: 289 DCQEKDPSLSELFLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 348


>gi|285026249|dbj|BAI67853.1| DNA gyrase B [Rubritalea sp. MN1-1030]
          Length = 360

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 113/364 (31%), Positives = 178/364 (48%), Gaps = 18/364 (4%)

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDA 224
           SD     V R   ++  +F RG    PLE   +   +K GT+ITF PD  IF D   F+ 
Sbjct: 1   SDWFRAEVNRDGKVYQIQFERGKTTEPLEVVGEAPSSKTGTKITFFPDATIFVDTIEFEF 60

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
            RL    +   +L+  +           E      KE F++  G++ +++    N++ + 
Sbjct: 61  DRLATRLRELTFLNPGLTIVLED-----ENPEKSRKETFFYARGIEEFVEQLGVNKTTVH 115

Query: 285 SEIFTGKTEKKGTHRGT---------VEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
                   ++K                +    + +   +    Y N+I   +GGTH +G 
Sbjct: 116 ESPVVLTGKRKVEIDYDGKTMEDDVFADVVFQYNDSYQDNILCYANSIPNADGGTHLTGF 175

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR I +YA+  +    +  S+  DD+    V ++SV +  P F+ QTK KLV+ + 
Sbjct: 176 RGALTRSINQYAKANKILKDKDPSLSGDDVREGIVCVISVKMPNPRFSSQTKDKLVNAEI 235

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
           +  V + + +    Y  +NP  A  +++  +  +  R   RK RE  RK+ +    LPGK
Sbjct: 236 EGVVSSIVYEGLQEYFEENPNLAKMIIDKAVNAARAREAARKARETVRKSVMSGGGLPGK 295

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS+     +E++IVEGDSAGGSAK  RNR+ QA+LPLRGK++NV  A   K   N++
Sbjct: 296 LADCSERDPAKSEIYIVEGDSAGGSAKSGRNRTTQAILPLRGKVINVEKARLHKALQNRE 355

Query: 513 IMDL 516
           I  +
Sbjct: 356 IQAM 359


>gi|330367267|dbj|BAK19428.1| DNA gyrase subunit B [Helicobacter acinonychis]
          Length = 356

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 129/366 (35%), Positives = 199/366 (54%), Gaps = 13/366 (3%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN--KRGTRITFRPDPKI 215
           G+SVVNALS  L +T+ ++  I+ Q+F +GIP+S LE   K +N  + GT I F PD  +
Sbjct: 1   GVSVVNALSKRLIMTIKKEGRIYRQEFEKGIPISELEIIGKTKNAKESGTTIEFFPDGSV 60

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
                 F A  L K  +  AYL+  +K  +  +K          +E +++  GLK +++ 
Sbjct: 61  MEVV-EFQANILQKRFKEMAYLNDGLKIAFKEEK-------TQLQETYFYEDGLKQFVKD 112

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLR 335
             + + L++S I     + +      V  A A  + N    S+ N I T EGGTHE+G +
Sbjct: 113 STK-KELLTSVISFKSMDGETHTSIEVALAYAD-DYNENTLSFVNNIKTSEGGTHEAGFK 170

Query: 336 VALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           + L++ I +Y +     +    IS+D+    V I+S+ + EP F GQTK+KL S   +  
Sbjct: 171 MGLSKAILQYIDNNIKTKESRPISEDIKEGLVAIVSLKMSEPLFEGQTKSKLGSSYVRAL 230

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454
           V   + D    +L +NP EA  +   V+  ++ R   +K RE   +K  +    LPGKLA
Sbjct: 231 VSKLVYDKIHQFLEENPNEAKIIANKVLLAAKAREASKKARELTRKKDNLSVGTLPGKLA 290

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC       +E+F+VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  +   KI  +++I 
Sbjct: 291 DCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIK 350

Query: 515 DLVQAL 520
           +++ A 
Sbjct: 351 NMITAF 356


>gi|327343617|dbj|BAK09553.1| DNA gyrase subunit B [endosymbiont of Nysius expressus]
          Length = 321

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 111/332 (33%), Positives = 166/332 (50%), Gaps = 15/332 (4%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD  +Y++SGGLHGVGISVVNALS +L + + RQ  I+ Q ++ G+P + LE   +  
Sbjct: 1   GKFDEISYKVSGGLHGVGISVVNALSQKLELIIKRQGKIYRQLYNTGVPKTTLEIIGETN 60

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
              GT I F P+P IF     F    L+K  +  A+L+  +      ++           
Sbjct: 61  K-TGTYIRFWPNPLIFKKNIKFKYDILVKRIRELAFLNPGLSISIQDNRINI-------H 112

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYC 319
           + F   GG+K ++    +N+  I   IF    EK       VE A+ W          + 
Sbjct: 113 DSFQEDGGIKAFVAFLSKNKIPIHPNIFYFAAEKDKI---NVEIALHWTNTFQNNIYCFT 169

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH SG R A+TR I  Y +      K  ++II DD     V I+++    P
Sbjct: 170 NNIPQHDGGTHLSGFRSAITRTINTYIDREGYNKKSKVNIIGDDTREGIVAIVTIKAHNP 229

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F+ QTK KLVS + +  VE  + +    YL+++P +A  ++  +I  +  R   RK RE
Sbjct: 230 KFSSQTKDKLVSSEIKSAVETLMNEYLIQYLLEHPQDAKSIVGKIISAARTREAARKVRE 289

Query: 438 VNRKTA-IRKLRLPGKLADCSQNIAHGTELFI 468
           +NRK   +    L GKLADC +      EL++
Sbjct: 290 INRKKGTLDLSILSGKLADCQEKNPILNELYL 321


>gi|159576588|dbj|BAF92841.1| DNA gyrase subunit B [Halomonas sp. SA-Hm1]
          Length = 324

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 114/336 (33%), Positives = 170/336 (50%), Gaps = 16/336 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG+SVVNALS+EL +T+ R   ++ Q +  G+P +PL    +     GTR+
Sbjct: 1   YKVCGGLHGVGVSVVNALSEELKLTIWRSGDVYEQTYQHGVPQAPLAVVGQTEK-SGTRV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            FRP  + F     F    L K  +  ++L+  V      ++   E       E F++ G
Sbjct: 60  HFRPSQETF-THIEFHYDILAKRLRELSFLNSGVAIRLLDERSGKE-------ELFHYEG 111

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           GLK ++     N++ ++           G     VE A+ W +     I  Y N I   +
Sbjct: 112 GLKAFVDHLNTNKTSLNPVFHFNVERDDGV---GVEVAMQWNDTFAENIFCYTNNIPQRD 168

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK
Sbjct: 169 GGTHLAGFRAALTRSLNNYIEAEGLLKKAKVNTTGDDAREGLTAIVSVKVPDPKFSSQTK 228

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTA 443
            KLVS + +  VE  +   F  YLV+ P EA  ++  +++        R+ +    RK A
Sbjct: 229 EKLVSSEVKTAVEQEMGRQFSEYLVERPNEAKAIVNKMLDAARAREAARKARDMTRRKGA 288

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADC +     +EL++VEGDSAGGSAK
Sbjct: 289 LDIAGLPGKLADCQEKDPSLSELYLVEGDSAGGSAK 324


>gi|238768284|dbj|BAH66705.1| DNA gyrase subunit beta [Aeromonas veronii]
          Length = 338

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 120/349 (34%), Positives = 188/349 (53%), Gaps = 16/349 (4%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F    L 
Sbjct: 2   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPAIFSDTL-FHYEILA 59

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F
Sbjct: 60  KRLRELSFLNSGVSIRLQDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVF 112

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
              TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +
Sbjct: 113 HFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMD 169

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                 K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +   
Sbjct: 170 KEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLA 229

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +
Sbjct: 230 DFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALS 289

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 290 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEEARFDKMISSQEV 338


>gi|19909721|dbj|BAB87056.1| DNA gyrase subunit B [Comamonas sp. E6]
          Length = 262

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 83/266 (31%), Positives = 123/266 (46%), Gaps = 29/266 (10%)

Query: 106 FLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            ++V DNGRGIP          P +S  EI LT LHAGGKF+ ++Y++SGGLHGVG+S V
Sbjct: 1   SISVTDNGRGIPTGVKMDDKHEPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCV 60

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSP-----------LEKKEKVRNKRGTRITFRP 211
           NALS  L +TV R   +   +F++G   +              K      KRGT + F P
Sbjct: 61  NALSKWLRLTVRRDGKVHQIEFAKGFVQNRLLETVDGFEVSPMKVTGATEKRGTEVHFLP 120

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
           D +IF     F    L K  +  ++L+  V+     ++   E         F   GG+K 
Sbjct: 121 DTEIFQQNHEFHYEILAKRLRELSFLNNGVRIRLKDERSGKEDD-------FSGAGGVKG 173

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGT-------HRGTVEWAIAWCEEN-PEITSYCNTIL 323
           +++     + ++    F     +              VE A+ W +    ++  + N I 
Sbjct: 174 FVEFINGTKKVLHPTAFHATGTRPAESYGGIPGTEIGVEVAMQWNDGYNEQVLCFTNNIP 233

Query: 324 TDEGGTHESGLRVALTRGIKKYAELT 349
             +GGTH +GLR A+TR I KY E  
Sbjct: 234 QRDGGTHLTGLRAAMTRVIGKYIESN 259


>gi|307343758|emb|CBJ19484.1| gyrase B subunit [Micromonospora auratinigra]
          Length = 355

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 100/360 (27%), Positives = 177/360 (49%), Gaps = 9/360 (2%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V + +  +++ Q++    P    +   +  ++ G+ ++F PD  +F     FD   + + 
Sbjct: 2   VEIHKSGSVWRQQYHNSKPTPLEK--GESTDRTGSAVSFWPDADVFETV-DFDFQTIYRR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            Q  A+L+  +      ++    + G   +  F + GG+  +++    +++ I   +   
Sbjct: 59  LQEMAFLTRGLTIHLLDERVPEGEEGKLREVTFRYDGGIADFVRHLNASKNPIHKTVVEF 118

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             E++G    ++E A+ W E     + ++ N I T EGGTHE G R ALT  + +Y    
Sbjct: 119 GAEEEG---MSLEIAMQWNESYGESVYTFANNINTHEGGTHEEGFRSALTSVVNRYGAEK 175

Query: 350 QNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
           +  +    +  +D+      I+SV +  P+F GQTKTKL +   +  V+    D    + 
Sbjct: 176 KLLKGDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWF 235

Query: 409 VQNPIEATKLLE-WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
            +NP EA  +++            ++ ++   RK+ +    +PGKLADC       +E+F
Sbjct: 236 DRNPAEAKMIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVF 295

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           IVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG      
Sbjct: 296 IVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGIHDD 355


>gi|238768406|dbj|BAH66766.1| DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 338

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 118/349 (33%), Positives = 188/349 (53%), Gaps = 16/349 (4%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   +    L 
Sbjct: 2   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFTDTL-YHYEILA 59

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F
Sbjct: 60  KRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVF 112

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
              TE+ G     +E A+ W +     +  + N I   +GGTH  G R ALTR +  Y +
Sbjct: 113 HFTTEQDGI---GLEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMD 169

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                 K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +   
Sbjct: 170 KEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTEVEQAMGEKLA 229

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +
Sbjct: 230 DFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALS 289

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 290 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEV 338


>gi|307343778|emb|CBJ19494.1| gyrase B subunit [Micromonospora lupini]
          Length = 351

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 104/355 (29%), Positives = 181/355 (50%), Gaps = 9/355 (2%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V + +  +++ Q +    P +  +   +  +  G+ ++F PDP +F     FD   + + 
Sbjct: 2   VEIHKSGSVWRQHYPNSKPSALEK--GEATDSTGSAVSFWPDPDVFETV-DFDFQTIYRR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            Q  A+L+  ++     ++   E+ G   +  FY+ GG+  +++    +++ I   +   
Sbjct: 59  LQEMAFLNRALRIHLLDERVAEEEDGRQREVTFYYEGGIADFVRHLNASKNPIHKTVVEF 118

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             E++G    ++E A+ W E     + ++ NTI T EGGTHE G R ALT  + +Y    
Sbjct: 119 GAEEEG---MSLEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSVVNRYGTDK 175

Query: 350 QNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
           +  +    +  +D+      I+SV +  P+F GQTKTKL +   +  V+    D    + 
Sbjct: 176 KLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWF 235

Query: 409 VQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
            +NP EA  ++ +           ++ ++   RK+ +    +PGKLADC       +E+F
Sbjct: 236 DRNPAEAKMIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVF 295

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           IVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG 
Sbjct: 296 IVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGT 350


>gi|307343780|emb|CBJ19495.1| gyrase B subunit [Micromonospora mirobrigensis]
          Length = 352

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 102/355 (28%), Positives = 176/355 (49%), Gaps = 7/355 (1%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V + +   ++ QK++   P    +   +  ++ G+ ++F PDP+IF     FD   + + 
Sbjct: 2   VEIHKAGFVWRQKYANSKPDPLEK--GETTDRAGSAVSFWPDPEIFQTV-DFDFQTIYRR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
               A+L+  ++     ++    + G   +  F +  G+  +++    +++ I   +   
Sbjct: 59  LHEMAFLNRGLRIHLLDERVAEGEEGKVREVTFLYEDGIADFVRHLNASKNPIHKTVVQF 118

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             E +      VE A+ W E     + ++ NTI T EGGTHE G R ALT  + +Y    
Sbjct: 119 DAE-EAEEGMAVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSVVNRYGAEK 177

Query: 350 QNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
           +  +    +  +D+      I+SV +  P+F GQTKTKL +   +  V+    D    + 
Sbjct: 178 KLLKGDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWF 237

Query: 409 VQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
            +NP EA  ++ +           ++ ++   RK+ +    +PGKLADC       +E+F
Sbjct: 238 DRNPAEAKMIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVF 297

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           IVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG 
Sbjct: 298 IVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGT 352


>gi|238768274|dbj|BAH66700.1| DNA gyrase subunit beta [Aeromonas sobria]
          Length = 338

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 120/349 (34%), Positives = 188/349 (53%), Gaps = 16/349 (4%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F    L 
Sbjct: 2   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSAG-TGTEVRFWPSPAIFSDTL-FHYEILA 59

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F
Sbjct: 60  KRLRELSFLNSGVSIRLQDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVF 112

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
              TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +
Sbjct: 113 HFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMD 169

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                 K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +   
Sbjct: 170 KEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLA 229

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +
Sbjct: 230 DFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALS 289

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 290 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEV 338


>gi|307343770|emb|CBJ19490.1| gyrase B subunit [Micromonospora echinaurantiaca]
          Length = 344

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 102/349 (29%), Positives = 175/349 (50%), Gaps = 10/349 (2%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V + +   ++ Q++S   P    +   +  N+ G+ + F PDP +F     FD   + + 
Sbjct: 2   VEIHKSGFVWRQQYSNSKPTPLEK--GETTNRTGSAVAFWPDPTVFETV-DFDFQTIYRR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            Q  A+L+  +      ++   E+   P +  F + GG+  +++    +++ I   +   
Sbjct: 59  LQEMAFLNRGLTIHLLDERSADEEG-KPREVTFLYKGGIADFVRHLNASKNPIHKTVVEF 117

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             E++G    +VE A+ W E     + ++ NTI T EGGTHE G R ALT  + +Y    
Sbjct: 118 GAEEEG---MSVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRAALTSVVNRYGAER 174

Query: 350 QNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
           +  +    +  +D+      I+SV +  P+F GQTKTKL +   +  V+    +    + 
Sbjct: 175 KLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNEWLVDWF 234

Query: 409 VQNPIEATKLLE-WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
            +NP EA  +++            ++ ++   RK+ +    +PGKLADC       +E+F
Sbjct: 235 DRNPAEAKIIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVF 294

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           IVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L
Sbjct: 295 IVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQAL 343


>gi|238768268|dbj|BAH66697.1| DNA gyrase subunit beta [Aeromonas sobria]
 gi|238768272|dbj|BAH66699.1| DNA gyrase subunit beta [Aeromonas sobria]
 gi|238768288|dbj|BAH66707.1| DNA gyrase subunit beta [Aeromonas sobria]
          Length = 338

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 119/349 (34%), Positives = 187/349 (53%), Gaps = 16/349 (4%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   +    L 
Sbjct: 2   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSG-TGTEVRFWPSPTIFTDTL-YHYEILA 59

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F
Sbjct: 60  KRLRELSFLNSGVSIRLHDERDGRE-------VHFCYEGGIKAFVEYLNQNKTPIHPKVF 112

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
              TE  G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +
Sbjct: 113 HFTTEHDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMD 169

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                 K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +   
Sbjct: 170 KEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLG 229

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +
Sbjct: 230 EFLLENPSDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALS 289

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 290 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEV 338


>gi|330367269|dbj|BAK19429.1| DNA gyrase subunit B [Helicobacter fennelliae]
          Length = 351

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 125/364 (34%), Positives = 192/364 (52%), Gaps = 18/364 (4%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L +T+ +   I+ Q+F +GIP S LE   +  N+RGT I F PD +I      F
Sbjct: 1   NALSKHLIMTIKKNGKIYRQEFQKGIPTSDLEIIGET-NERGTTIEFFPDGEIMEVL-DF 58

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           +   L+   +  AYL+  +   +  ++   E       E ++F  GL  +++    N+  
Sbjct: 59  NNETLITRFKEMAYLNQNITIDFKDERTGFE-------ESYHFENGLVQFIENI--NKKP 109

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRG 341
             S I + K          VE A+A+ E  + ++ S+ N I T +GGTHE+G R  L+R 
Sbjct: 110 FISTILSFKG---NEQETEVEIALAYNEGFDEKVLSFVNNIRTPDGGTHEAGFRAGLSRA 166

Query: 342 IKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  Y +   N  ++   I  DD+    + I+S  I +P+F GQTK KL S   +  V+  
Sbjct: 167 IINYIDANANAREKDTKITGDDVREGLIAIVSTKIIDPQFEGQTKGKLGSSFIKPIVQKL 226

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
             +    +  +NP EA  +++  +  +  R   +K RE   +K       LPGKLADC  
Sbjct: 227 AFERLTKFFEENPNEAKIIMQKALLAARGREAAKKARELTRKKENFSVGTLPGKLADCQS 286

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+++VEGDSAGGSAKQ R+R  QA+LPLRGKILNV  +  +KI  +++I +++ 
Sbjct: 287 KDPLESEIYLVEGDSAGGSAKQGRDRVYQAILPLRGKILNVEKSRLDKILKSEEIKNMIT 346

Query: 519 ALGC 522
           A GC
Sbjct: 347 AFGC 350


>gi|146328109|emb|CAM97354.1| DNA gyrase subunit B [Aeromonas caviae]
          Length = 335

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 119/346 (34%), Positives = 186/346 (53%), Gaps = 16/346 (4%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K 
Sbjct: 2   LTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEILAKR 59

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F  
Sbjct: 60  LRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHF 112

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +  
Sbjct: 113 TTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNNYMDKE 169

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +
Sbjct: 170 DYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADF 229

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
           L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL
Sbjct: 230 LLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSEL 289

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           +IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q+
Sbjct: 290 YIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQE 335


>gi|285026251|dbj|BAI67854.1| DNA gyrase B [Rubritalea sp. MN1-1054]
 gi|285026253|dbj|BAI67855.1| DNA gyrase B [Rubritalea sp. MN1-1042]
 gi|285026255|dbj|BAI67856.1| DNA gyrase B [Rubritalea sp. MN1-1006]
          Length = 360

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 113/364 (31%), Positives = 178/364 (48%), Gaps = 18/364 (4%)

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDA 224
           SD     V R   ++  +F RG    PLE   +   +K GT+ITF PD  IF D   F+ 
Sbjct: 1   SDWFRAEVTRDGKVYQIQFERGKTTEPLEVVGEAPSSKTGTKITFFPDATIFVDTIEFEF 60

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
            RL    +   +L+  +           E      KE F++  G++ +++    N++ + 
Sbjct: 61  DRLATRLRELTFLNPGLTIVLED-----ENPEKSRKETFFYARGIEEFVEQLGVNKTTVH 115

Query: 285 SEIFTGKTEKKGTHRGT---------VEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
                   ++K                +    + +   +    Y N+I   +GGTH +G 
Sbjct: 116 ESPVVLTGKRKVEIDYDGKTMEDDVFADVVFQYNDSYQDNILCYANSIPNADGGTHLTGF 175

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR I +YA+  +    +  S+  DD+    V ++SV +  P F+ QTK KLV+ + 
Sbjct: 176 RGALTRSINQYAKANKILKDKDPSLSGDDVREGIVCVISVKMPNPRFSSQTKDKLVNAEI 235

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
           +  V + + +    Y  +NP  A  +++  +  +  R   RK RE  RK+ +    LPGK
Sbjct: 236 EGVVSSIVYEGLQEYFEENPNLAKMIIDKAVNAARAREAARKARETVRKSVMSGGGLPGK 295

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS+     +E++IVEGDSAGGSAK  RNR+ QA+LPLRGK++NV  A   K   N++
Sbjct: 296 LADCSERDPAKSEIYIVEGDSAGGSAKSGRNRTTQAILPLRGKVINVEKARLHKALQNRE 355

Query: 513 IMDL 516
           I  +
Sbjct: 356 IQAM 359


>gi|244537688|emb|CAX15420.1| gyrase B [Micromonospora sp. GUI15]
          Length = 344

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 102/349 (29%), Positives = 175/349 (50%), Gaps = 10/349 (2%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           + + +   ++ Q++    P    +   +  N  G+ ++F PDP IF     F    + + 
Sbjct: 2   LEIHKDGNVWRQQYHNSKPTPLEK--GETTNLSGSSVSFWPDPTIFETV-EFTFETIYRR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            Q  A+L+  +      ++ + E+ G P +  F + GG+  +++    ++S I   +   
Sbjct: 59  LQEMAFLNRGLTIQLRDER-VQEEDGKPREVTFCYKGGIADFVRHLNASKSPIHKTVVEF 117

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             E++G    ++E A+ W E     + ++ NTI T EGGTHE G R ALT  + +Y    
Sbjct: 118 GAEEEG---MSLEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSEVNRYGTDK 174

Query: 350 QNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
           +  +    +  +D+      I+SV +  P+F GQTKTKL +   +  V+    D    + 
Sbjct: 175 KLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWF 234

Query: 409 VQNPIEATKLLE-WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
            +NP EA  +++            ++ ++   RK+ +    +PGKLADC       +E+F
Sbjct: 235 DRNPAEAKMIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVF 294

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           IVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L
Sbjct: 295 IVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQAL 343


>gi|115381518|gb|ABI96441.1| gyrase B [Salmonella enterica subsp. enterica serovar Chester]
          Length = 323

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 115/330 (34%), Positives = 179/330 (54%), Gaps = 14/330 (4%)

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
               +K GT + F P  + F +   F+   L K  +  ++L+  V       ++  E   
Sbjct: 4   TGDTDKTGTMVRFWPSHENFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--- 60

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
               + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I
Sbjct: 61  ----DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENI 113

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV 
Sbjct: 114 YCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVK 173

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R
Sbjct: 174 VPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAAR 233

Query: 434 KQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           + R    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL
Sbjct: 234 RAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPL 293

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           +GKILNV  A  +K+ ++Q++  L+ ALGC
Sbjct: 294 KGKILNVEKARFDKMLSSQEVATLITALGC 323


>gi|219944502|gb|ACL55025.1| DNA gyrase B subunit [Dietzia maris]
          Length = 444

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 129/444 (29%), Positives = 194/444 (43%), Gaps = 59/444 (13%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD+ +Y +SGGLHGVGISVVNALS  + V + R   ++ Q F   +P   ++      
Sbjct: 1   GKFDSDSYAVSGGLHGVGISVVNALSTRVEVQIKRDGRLWKQDFDMAVPAELVDA--GPA 58

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK------ 254
              GTR+ F  DP IF     +D   + +  Q  A+L+  +    +  +  AEK      
Sbjct: 59  EGTGTRVRFWADPTIFES-TEYDFDVVARRLQEMAFLNKGLTITLTDRRPRAEKAAELDA 117

Query: 255 ---------------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
                                    + E+ +  G   +          +   E       
Sbjct: 118 IADSEGSGAEAAPGSDEGSDLAHAVDAEQAFAEGAQASDAVEATHVEPVKVRERKRTFHY 177

Query: 294 KKGTHRGTVEWAIAWCEENPEITS-------------------YCNTILTDEGG--TH-- 330
             G          +    +P I                     Y  ++ T      TH  
Sbjct: 178 PDGLKDYVTAINKSKTSIHPTILYFEGKGPGHEVEVAMQWNSGYSESVHTFANTINTHEG 237

Query: 331 ---ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
              E G R ALT  + KYA   +   ++  ++  DD+      +LS  I +P+F GQTKT
Sbjct: 238 GTHEEGFRAALTSLVNKYAREKKLIKEKDPNLTGDDIREGLAAVLSAKISDPQFEGQTKT 297

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAI 444
           KL + + +  V+  + +   H+   NP EA  ++   I  S+ R+  RK RE+  RK+A 
Sbjct: 298 KLGNTEVKGFVQRQVSEHVGHWFEANPAEAKVIINKAIASSQARVAARKAREMVRRKSAT 357

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC       +EL+IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  +  
Sbjct: 358 DIGGLPGKLADCRSKDPAKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKSRI 417

Query: 505 EKIRNNQQIMDLVQALGCRTRSQY 528
           +K+  N ++  ++ ALG     ++
Sbjct: 418 DKVLKNAEVQAIITALGTGIHEEF 441


>gi|207678272|gb|ACI25150.1| DNA gyrase B [Phaeobacter sp. M4-3.2]
          Length = 343

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 109/351 (31%), Positives = 176/351 (50%), Gaps = 13/351 (3%)

Query: 170 HVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLK 229
            + + R       +F RG     L+   +  ++ GT + F      F +   +    L K
Sbjct: 1   ELRIWRDGKEHVARFERGDTAEHLKVVGECGDQTGTEVRFLASTDTFSNL-EYSFETLEK 59

Query: 230 MTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFT 289
             +  A+L+  V+     ++          + E ++ GG+K +++    ++S +      
Sbjct: 60  RLRELAFLNSGVRIILIDER-----PAERLEVELFYEGGVKEFVKYLDRSKSPVMEAPIY 114

Query: 290 GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
              +K       VE A+ W +     +  + N I   +GGTH +G R ALTR I  YA+ 
Sbjct: 115 ITGDKDDI---GVEVAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRTINNYAQS 171

Query: 349 TQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
           +    K  +S   DD       +LSV + +P+F+ QTK KLVS + +  VE+ + +    
Sbjct: 172 SGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVNEKLAE 231

Query: 407 YLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTE 465
           +  +NP +A +++  +IE +  R   RK RE   RKTA+    L GKL DCS+     TE
Sbjct: 232 WFEENPNQAKQIVGKIIEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSEKDPSKTE 291

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +F+VEGDSAGGSA+  R+R  QA+LPLRGKILNV  A  +++  +Q+I +L
Sbjct: 292 VFLVEGDSAGGSAQTGRDRMTQAILPLRGKILNVEPARFDRMLGSQEIGNL 342


>gi|159576579|dbj|BAF92837.1| DNA gyrase subunit B [Halomonas sp. KJ4-2-1]
          Length = 324

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 116/336 (34%), Positives = 173/336 (51%), Gaps = 16/336 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGV +SVVNALS+EL +T+ RQ  +F Q +  G+P +PL    K     GTR+
Sbjct: 1   YKVCGGLHGVSVSVVNALSEELRLTIWRQGEVFEQIYHHGVPQAPLSVVGKTEK-SGTRV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            FRP P  F +   F    L K  +  ++L+  V      ++   E       E F++ G
Sbjct: 60  HFRPSPATFAN-IEFHYDILAKRLRELSFLNSGVAIRLMDERSGKE-------ELFHYEG 111

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           GLK ++    +N+++++           G     VE A+ W +     I  Y N I   +
Sbjct: 112 GLKAFVDHLNKNKTVLNPVFHFNAGRDDGV---EVEVAMQWSDAFTENIFCYTNNIPQRD 168

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK
Sbjct: 169 GGTHLAGFRAALTRTLNHYIEAEGLLKKAKVNTSGDDAREGLTAIISVKVPDPKFSSQTK 228

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTA 443
            KLVS + +  VE  +   F  YL++ P EA  ++  +++        R+ +    RK A
Sbjct: 229 DKLVSSEVKTAVEQEMGRLFADYLIEKPNEAKAIVNKMLDAARAREAARKARDMTRRKGA 288

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADC +     +EL++VEGDSAGGSAK
Sbjct: 289 LDIAGLPGKLADCQEKDPSQSELYLVEGDSAGGSAK 324


>gi|312086869|ref|XP_003145247.1| hypothetical protein LOAG_09672 [Loa loa]
 gi|307759590|gb|EFO18824.1| hypothetical protein LOAG_09672 [Loa loa]
          Length = 655

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 11/177 (6%)

Query: 509 NNQQIMDLVQALGCRTRSQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564
            N +I  L++ LG +    Y   +    LRY +++IMTD D DG+HI  L++   +    
Sbjct: 3   KNSEISALIRILGLKFGENYGNAEDLKSLRYGRLLIMTDQDPDGSHIKGLIINLLHMYWP 62

Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624
            L++  ++     PL +  +G++    +     ++   E       K  I  +KGLG   
Sbjct: 63  SLLKANYINYFITPLLKAKRGSEVKSFYSTADYERWQAENPDS--AKYSIKYYKGLGTSS 120

Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681
           A + +E   D  + T+    I     + +    +  K    KAD+R  +I E +  +
Sbjct: 121 AKEAREYFTDIERHTVNF--IYDGKAADESIDLAFAK---NKADDRKIWIAESSKLL 172


>gi|219944500|gb|ACL55024.1| DNA gyrase B subunit [Dietzia maris]
          Length = 444

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 129/444 (29%), Positives = 193/444 (43%), Gaps = 59/444 (13%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD+ +Y +SGGLHGVGISVVNALS  + V + R   ++ Q F   +P   ++      
Sbjct: 1   GKFDSDSYAVSGGLHGVGISVVNALSTRVEVQIKRDGRLWKQDFDMAVPAELVDA--GPA 58

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK------ 254
              GTR+ F  DP IF     +D   + +  Q  A+L+  +    +  +  AEK      
Sbjct: 59  EGTGTRVRFWADPTIFES-TEYDFDVVARRLQEMAFLNKGLTITLTDRRPRAEKAAELDA 117

Query: 255 ---------------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
                                    + E+ +  G              +   E       
Sbjct: 118 IADSEGSGAEAAPGSDEGSDLAHAVDAEQAFAEGAQAADAVEVTPVEPVKVRERKRTFHY 177

Query: 294 KKGTHRGTVEWAIAWCEENPEITS-------------------YCNTILTDEGG--THE- 331
             G          +    +P I                     Y  ++ T      THE 
Sbjct: 178 PDGLKDYVTAINKSKTSIHPTILYFEGKGPGHEVEVAMQWNSGYSESVHTFANTINTHEG 237

Query: 332 ----SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
                G R ALT  + KYA   +   ++  ++  DD+      +LS  I +P+F GQTKT
Sbjct: 238 GTHEEGFRAALTSLVNKYAREKKLIKEKDPNLTGDDIREGLAAVLSAKISDPQFEGQTKT 297

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAI 444
           KL + + +  V+  + +   H+   NP EA  ++   I  S+ R+  RK RE+  RK+A 
Sbjct: 298 KLGNTEVKGFVQRQVSEHVGHWFEANPAEAKVIINKAIASSQARVAARKAREMVRRKSAT 357

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC       +EL+IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  +  
Sbjct: 358 DIGGLPGKLADCRSKDPSKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKSRI 417

Query: 505 EKIRNNQQIMDLVQALGCRTRSQY 528
           +K+  N ++  ++ ALG     ++
Sbjct: 418 DKVLKNAEVQAIITALGTGIHEEF 441


>gi|307343806|emb|CBJ19508.1| gyrase B subunit [Micromonospora sp. GUI16]
          Length = 340

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 104/346 (30%), Positives = 178/346 (51%), Gaps = 9/346 (2%)

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
           + Q ++   P    +   +  ++ G+ ++F PDP +F     FD   + +  Q  A+L+ 
Sbjct: 1   WRQHYTNSKPSPLEK--GEATDRTGSAVSFWPDPDVFETV-DFDFQTIYRRLQEMAFLNR 57

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            ++     ++   E+ G   +  FY+ GG+  +++    ++S I   +   + E++G   
Sbjct: 58  ALRIHLLDERVAEEEDGRQREVTFYYEGGIADFVRHLNASKSPIHKTVVEFEAEEEG--- 114

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR-AISI 357
            ++E A+ W E     + ++ NTI T EGGTHE G R ALT  + +Y    +  +    +
Sbjct: 115 MSLEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSVVNRYGTDKKLLKGDEKL 174

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             +D+      I+SV +  P+F GQTKTKL +   +  V+    D    +  +NP EA  
Sbjct: 175 SGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKM 234

Query: 418 LL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++ +           ++ ++   RK+ +    +PGKLADC       +E+FIVEGDSAGG
Sbjct: 235 IITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGG 294

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           SAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG 
Sbjct: 295 SAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGT 340


>gi|219944498|gb|ACL55023.1| DNA gyrase B subunit [Dietzia maris]
 gi|219944504|gb|ACL55026.1| DNA gyrase B subunit [Dietzia maris]
 gi|323362415|gb|ADX42120.1| DNA gyrase beta subunit [Dietzia schimae]
          Length = 444

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 129/444 (29%), Positives = 193/444 (43%), Gaps = 59/444 (13%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD+ +Y +SGGLHGVGISVVNALS  + V + R   ++ Q F   +P   ++      
Sbjct: 1   GKFDSDSYAVSGGLHGVGISVVNALSTRVEVQIKRDGRLWKQDFDMAVPAELVDA--GPA 58

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK------ 254
              GTR+ F  DP IF     +D   + +  Q  A+L+  +    +  +  AEK      
Sbjct: 59  EGTGTRVRFWADPTIFES-TEYDFDVVARRLQEMAFLNKGLTITLTDRRPRAEKAAELDA 117

Query: 255 ---------------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
                                    + E+ +  G              +   E       
Sbjct: 118 IADSEGSGAEAAPGSDEGSDLAHAVDAEQAFAEGAQAADAVEVTPVEPVKVRERKRTFHY 177

Query: 294 KKGTHRGTVEWAIAWCEENPEITS-------------------YCNTILTDEGG--THE- 331
             G          +    +P I                     Y  ++ T      THE 
Sbjct: 178 PDGLKDYVTAINKSKTSIHPTILYFEGKGPGHEVEVAMQWNSGYSESVHTFANTINTHEG 237

Query: 332 ----SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
                G R ALT  + KYA   +   ++  ++  DD+      +LS  I +P+F GQTKT
Sbjct: 238 GTHEEGFRAALTSLVNKYAREKKLIKEKDPNLTGDDIREGLAAVLSAKISDPQFEGQTKT 297

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAI 444
           KL + + +  V+  + +   H+   NP EA  ++   I  S+ R+  RK RE+  RK+A 
Sbjct: 298 KLGNTEVKGFVQRQVSEHVGHWFEANPAEAKVIINKAIASSQARVAARKAREMVRRKSAT 357

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC       +EL+IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  +  
Sbjct: 358 DIGGLPGKLADCRSKDPAKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKSRI 417

Query: 505 EKIRNNQQIMDLVQALGCRTRSQY 528
           +K+  N ++  ++ ALG     ++
Sbjct: 418 DKVLKNAEVQAIITALGTGIHEEF 441


>gi|164456739|dbj|BAF97862.1| gyrase B subunit [Vibrio vulnificus]
          Length = 284

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 88/294 (29%), Positives = 151/294 (51%), Gaps = 13/294 (4%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R     SQ +  G+P +PL       
Sbjct: 1   GKFDDNSYKVSGGLHGVGVSVVNALSEKVLLTIHRGGHTHSQTYRHGVPDAPLAIIGDTE 60

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
              GT + F P  + F +   F    L K  +  ++L+  V      ++E  +K      
Sbjct: 61  K-TGTTVRFWPSAQTFTN-IEFHYDILAKRLRELSFLNSGVSIKLFDEREEDKK------ 112

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
           + F + GG++ ++     N++ I  ++F   +E++      VE A+ W +     I  + 
Sbjct: 113 DHFMYEGGIQAFVTHLNRNKTPIHEKVFHFNSERED--GIAVEVAMQWNDGFQENIYCFT 170

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH +G R ALTR +  Y +      K   +   DD       ++SV + +P
Sbjct: 171 NNIPQRDGGTHLAGFRAALTRTLNSYMDKEGYSKKAKTATSGDDAREGLTAVVSVKVPDP 230

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           +F+ QTK KLVS + +  VE+ + D  + +L ++P EA  +   +I+ +  R  
Sbjct: 231 KFSSQTKDKLVSSEVKSAVESFMADKLNDFLAEHPSEAKTVCSKIIDAARAREA 284


>gi|307343820|emb|CBJ19515.1| gyrase B subunit [Micromonospora sp. GUI40]
          Length = 347

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 99/353 (28%), Positives = 177/353 (50%), Gaps = 9/353 (2%)

Query: 173 VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQ 232
           + +  +++ Q ++   P    +   +  +  G+ ++F PDP +F     FD   + +  Q
Sbjct: 1   IHKSGSVWRQHYTNSKPSPLEK--GEATDLTGSAVSFWPDPDVFETI-DFDFQTIYRRLQ 57

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             A+L+  +      ++   ++ G   +  F + GG+  +++    +++ +   +     
Sbjct: 58  EMAFLNRGITIHLLDERVAEDEDGKTREVTFRYDGGIADFVRHLNASKNPMHKTVVEFGA 117

Query: 293 EKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN 351
           E++G    ++E A+ W E     + ++ N I T EGGTHE G R ALT  + +Y    + 
Sbjct: 118 EEEG---MSLEIAMQWNESYGESVYTFANNINTHEGGTHEEGFRSALTSVVNRYGTDKKL 174

Query: 352 KR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            +    +  +D+      I+SV +  P+F GQTKTKL +   +  V+    D    +  +
Sbjct: 175 LKGDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWFDR 234

Query: 411 NPIEATKLLE-WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           NP EA  +++            ++ ++   RK+ +    +PGKLADC       +E+FIV
Sbjct: 235 NPAEAKTIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIV 294

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           EGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG 
Sbjct: 295 EGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGT 347


>gi|110225018|dbj|BAE97498.1| DNA gyrase subunit B [Streptococcus salivarius]
 gi|110225024|dbj|BAE97501.1| DNA gyrase subunit B [Streptococcus vestibularis]
          Length = 300

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 100/302 (33%), Positives = 159/302 (52%), Gaps = 12/302 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS +L V V +   I  Q++ RG+ ++ L    +     G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVKVYKNGHIHFQEYKRGVVVADLAVIGETEKH-G 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PDP+IF +   FD  +L K  Q  A+L+  ++   +  +E  E     +++ ++
Sbjct: 60  TTVHFTPDPEIFQETTEFDFGKLAKRIQELAFLNKGLRISITDKREGLE-----QEKHYH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+ +Y++   EN+ +I  E      E  G    +VE A+ +       + S+ N I 
Sbjct: 115 YEGGITSYVKYINENKDVIFDEPIYTDGEMDGI---SVEVAMQYTTGYHETVMSFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G R ALTR I  YA   +   ++  ++  DD+      I+SV    P+F G
Sbjct: 172 THEGGTHEQGFRTALTRVINDYARQNKILKEKDDNLTGDDVREGLTAIISVKHPNPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + +  +       +    +L++NP  A K++E  I  S+ R+  ++ REV RK
Sbjct: 232 QTKTKLGNSEVVKITNRLFSEALSRFLLENPAIAKKIVEKGILASKARIAAKRAREVTRK 291

Query: 442 TA 443
            +
Sbjct: 292 KS 293


>gi|307343874|emb|CBJ19542.1| gyrase B subunit [Micromonospora sp. SR6]
          Length = 348

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 99/354 (27%), Positives = 173/354 (48%), Gaps = 9/354 (2%)

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
           + Q++    P    +   +  ++ G+ ++F PD  +F     FD   + +  Q  A+L+ 
Sbjct: 1   WRQQYHHSKPTPLEK--GETTDRTGSAVSFWPDADVFETV-DFDFQTIYRRLQEMAFLNR 57

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            +      ++    + G   +  F + GG+  +++    +++ +   +     E++G   
Sbjct: 58  GITIHLLDERVPEGEEGKIREVTFRYDGGIADFVRHLNASKNPMHKTVVEFDAEEEG--- 114

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR-AISI 357
            +VE A+ W E     + ++ N I T EGGTHE G R ALT  + +Y    +  +    +
Sbjct: 115 MSVEIAMQWNESYGESVYTFANNINTHEGGTHEEGFRSALTSVVNRYGTDKKLLKGDEKL 174

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             +D+      I+SV +  P+F GQTKTKL +   +  V+    D    +  +NP EA  
Sbjct: 175 SGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKT 234

Query: 418 LLE-WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           +++            ++ ++   RK+ +    +PGKLADC       +E+FIVEGDSAGG
Sbjct: 235 IIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGG 294

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530
           SAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG      +  
Sbjct: 295 SAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGIHDDFDM 348


>gi|197295767|gb|ACH58593.1| gyrase subunit B [Methylobacterium extorquens]
          Length = 383

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 123/370 (33%), Positives = 191/370 (51%), Gaps = 15/370 (4%)

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  L + + R       +F  G  ++PLE      ++RGT +TF P  + F    
Sbjct: 1   VVNALSTSLKLRIWRGGKEHRMEFRHGDAVAPLEVVGPAGDRRGTEVTFLPSTETFT-MT 59

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   L K  +  A+L+  V+   +  +    K      EE  + GG++ +++    +R
Sbjct: 60  EFDYPTLEKRLRELAFLNSGVRIVVTDARHAEHKR-----EELCYEGGVEAFVRYLDRSR 114

Query: 281 SLIS--SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
             +   ++  T   E+ G     VE A+ W +     +  + N I   +GGTH +G R A
Sbjct: 115 KPVDGMTKPVTVLGERDGI---RVEVALWWNDSFNETVLPFTNNIPQRDGGTHMAGFRAA 171

Query: 338 LTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  YAE +   +   +    DD       ++SV + +P+F+ QTK KLVS + +  
Sbjct: 172 LTRQLTGYAESSGIAKREKVSLTGDDCREGLTAVISVQVPDPKFSSQTKDKLVSSEVRPA 231

Query: 396 VENALRDPFDHYLVQNPIEATK-LLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454
           VEN L +    +L +NP +A   + + V+  +     R+ +  + RK A+    LPGKLA
Sbjct: 232 VENILNEGLSTWLEENPAQAKSVMGKVVLAAAAREAARKARETITRKGALDIASLPGKLA 291

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +      EL +VEGDSAGGSAKQ R+R+ QAVLPLRGKILNV    ++++ ++ +I 
Sbjct: 292 DCQERDPSKCELLLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERVRADRMLSSAEIG 351

Query: 515 DLVQALGCRT 524
            L+ ALG   
Sbjct: 352 TLITALGAGI 361


>gi|170783856|gb|ACB37401.1| DNA gyrase subunit B [Spiroplasma mirum]
          Length = 129

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 48/125 (38%), Positives = 65/125 (52%), Gaps = 10/125 (8%)

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRIT--QGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615
           FFY+ M  LIE K +++  PPLF+IT  +  K  YA +E   +  L+  K     K E+ 
Sbjct: 1   FFYRFMRPLIEDKRVYIALPPLFKITNLKSKKVSYAWNENELKTKLKHLKD----KFELQ 56

Query: 616 RFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675
           R+KGLGEM A QL ET M+   R L+ V I+         +  I  LMG  A +R  +I 
Sbjct: 57  RYKGLGEMNAEQLWETTMNPETRQLIAVTIDD----AAIAEKRIVTLMGDDAKKRKDWID 112

Query: 676 ERASF 680
           E   F
Sbjct: 113 ENVKF 117


>gi|254973569|gb|ACT98613.1| gyrase B [Alishewanella aestuarii]
          Length = 344

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 117/355 (32%), Positives = 189/355 (53%), Gaps = 15/355 (4%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L +T+ R+  + SQ +  G+P +PL    +     GT I F P P IF D   F    L 
Sbjct: 1   LELTIRRKGQVHSQIYHLGVPQAPLAVIGETEG-SGTAIRFWPSPTIFSDIN-FHYDILA 58

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           K  +  ++L+  V    + ++         + + F + GG++ ++Q    +++ I  + F
Sbjct: 59  KRLRELSFLNSGVSIILTDER-------TDKTDHFKYDGGIEAFVQYLNRSKTSIHPKAF 111

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
               +++      VE A+ W +     +  + N I   +GGTH +G R ALTR +  Y +
Sbjct: 112 YFTDQRED--GIAVEVAMQWNDSYQENVFCFTNNIPQRDGGTHLAGFRGALTRVLNTYID 169

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                 K  +    DD       ++SV + +P+F+ QTK KLVS + +  VE+ + +  +
Sbjct: 170 QEGYAKKMKVQASGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVRSAVESVMAEKLN 229

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGT 464
            YL++NP +A  ++  +++ +  R   RK R    RK A+    LPGKLADC +     +
Sbjct: 230 EYLLENPGDAKIIVGKIVDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALS 289

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
           EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ A
Sbjct: 290 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 344


>gi|159576560|dbj|BAF92828.1| DNA gyrase subunit B [Halomonas arcis]
          Length = 324

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 118/336 (35%), Positives = 175/336 (52%), Gaps = 16/336 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG+SVVNALS+EL +T+ RQ  +F Q +  G+P +PL    K     GTR+
Sbjct: 1   YKVCGGLHGVGVSVVNALSEELRLTIWRQGEVFEQVYQHGVPQAPLGIVGKTEK-SGTRV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            FRP P  F +   F    L K  +  ++L+  V      ++   E       E F++ G
Sbjct: 60  HFRPSPNTFAN-IEFHYDILAKRLRELSFLNSGVAIRLMDERSGKE-------ELFHYEG 111

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           GLK ++    +N+++++         + G     VE A+ W E     I  Y N I   +
Sbjct: 112 GLKAFVDHLNKNKTVLNPVFHFNALREDGV---EVEVAMQWSEAFTENIFCYTNNIPQRD 168

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK
Sbjct: 169 GGTHLAGFRAALTRTLNHYIEAQGLLKKSKVNTSGDDAREGLTAIISVKVPDPKFSSQTK 228

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTA 443
            KLVS + +  VE  +   F  YL++ P EA  ++  +++        R+ +    RK A
Sbjct: 229 DKLVSSEVKTAVEQEMGRLFADYLIEKPNEAKSIVNKMLDAARAREAARKARDMTRRKGA 288

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADC +     +EL++VEGDSAGGSAK
Sbjct: 289 LDIAGLPGKLADCQEKDPSQSELYLVEGDSAGGSAK 324


>gi|219944508|gb|ACL55028.1| DNA gyrase B subunit [Dietzia maris]
          Length = 444

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 129/444 (29%), Positives = 193/444 (43%), Gaps = 59/444 (13%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD+ +Y +SGGLHGVGISVVNALS  + V + R   ++ Q F   +P   ++      
Sbjct: 1   GKFDSDSYAVSGGLHGVGISVVNALSTRVEVQIKRDGRLWKQDFDMAVPAELVDA--GPA 58

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK------ 254
              GTR+ F  DP IF     +D   + +  Q  A+L+  +    +  +  AEK      
Sbjct: 59  EGTGTRVRFWADPTIFES-TEYDFDVVARRLQEMAFLNKGLTITLTDRRPRAEKAAELDA 117

Query: 255 ---------------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
                                    + E+ +  G              +   E       
Sbjct: 118 IADSEGSGAEAAPGSDEGSDLAHAVDAEQAFAEGAQAADAVEATPVEPVKVRERKRTFHY 177

Query: 294 KKGTHRGTVEWAIAWCEENPEITS-------------------YCNTILTDEGG--THES 332
             G          +    +P I                     Y  ++ T      THE 
Sbjct: 178 PDGLKDYVTAINKSKTSIHPTILYFEGKGPGHEVEVAMQWNSGYSESVHTFANTINTHEG 237

Query: 333 G-----LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           G      R ALT  + KYA   +   ++  ++  DD+      +LS  I +P+F GQTKT
Sbjct: 238 GTHEEGFRAALTSLVNKYAREKKLIKEKDPNLTGDDIREGLAAVLSAKISDPQFEGQTKT 297

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAI 444
           KL + + +  V+  + +   H+   NP EA  ++   I  S+ R+  RK RE+  RK+A 
Sbjct: 298 KLGNTEVKGFVQRQVSEHVGHWFEANPAEAKVIINKAIASSQARVAARKAREMVRRKSAT 357

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC       +EL+IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  +  
Sbjct: 358 DIGGLPGKLADCRSKDPAKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKSRI 417

Query: 505 EKIRNNQQIMDLVQALGCRTRSQY 528
           +K+  N ++  ++ ALG     ++
Sbjct: 418 DKVLKNAEVQAIITALGTGIHEEF 441


>gi|110225022|dbj|BAE97500.1| DNA gyrase subunit B [Streptococcus thermophilus]
          Length = 300

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 100/302 (33%), Positives = 158/302 (52%), Gaps = 12/302 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS +L V V +   I  Q++ RG+ +  L    +     G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVKVYKNGHIHFQEYKRGVVVDDLRIIGETEEH-G 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PDP+IF +   FD  +L K  Q  A+L+  ++   +  +E  E     +++ ++
Sbjct: 60  TTVHFIPDPEIFQETTEFDFEKLAKRFQELAFLNKGLRISITDKREGLE-----QEKHYH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+ +Y++   EN+ +I  E      E  G    +VE A+ +       + S+ N I 
Sbjct: 115 YEGGITSYVKYINENKDVIFDEPIYTYGEMDGI---SVEVAMQYTTGYHETVMSFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G R ALTR I  YA   +   ++  ++  DD+      I+SV    P+F G
Sbjct: 172 THEGGTHEQGFRTALTRVINDYARQNKILKEKDDNLTGDDVREGLTAIISVKHPNPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + +  +       +    +L++NP  A K++E  I  S+ R+  ++ REV RK
Sbjct: 232 QTKTKLGNSEVVKITNRLFSEALSRFLLENPAIAKKIVEKGILASKARIAAKRAREVTRK 291

Query: 442 TA 443
            +
Sbjct: 292 KS 293


>gi|219944496|gb|ACL55022.1| DNA gyrase B subunit [Dietzia maris]
          Length = 444

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 129/444 (29%), Positives = 193/444 (43%), Gaps = 59/444 (13%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD+ +Y +SGGLHGVGISVVNALS  + V + R   ++ Q F   +P   ++      
Sbjct: 1   GKFDSDSYAVSGGLHGVGISVVNALSTRVEVQIKRDGRLWKQDFDMAVPAELVDA--GPA 58

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK------ 254
              GTR+ F  DP IF     +D   + +  Q  A+L+  +    +  +  AEK      
Sbjct: 59  EGTGTRVRFWADPTIFES-TEYDFDVVARRLQEMAFLNKGLTITLTDRRPRAEKAAELDA 117

Query: 255 ---------------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
                                    + E+ +  G              +   E       
Sbjct: 118 IADSEGSGAEAAPGSDDGSDLAHAVDAEQAFAEGAQAADAVEVTPVDPVKVRERKRTFHY 177

Query: 294 KKGTHRGTVEWAIAWCEENPEITS-------------------YCNTILTDEGG--THES 332
             G          +    +P I                     Y  ++ T      THE 
Sbjct: 178 PDGLKDYVTAINKSKTSIHPTILYFEGKGPGHEVEVAMQWNSGYSESVHTFANTINTHEG 237

Query: 333 G-----LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           G      R ALT  + KYA   +   ++  ++  DD+      +LS  I +P+F GQTKT
Sbjct: 238 GTHEEGFRAALTSLVNKYARDKKLIKEKDPNLTGDDIREGLAAVLSAKISDPQFEGQTKT 297

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAI 444
           KL + + +  V+  + +   H+   NP EA  ++   I  S+ R+  RK RE+  RK+A 
Sbjct: 298 KLGNTEVKGFVQRQVSEHVGHWFEANPAEAKVIINKAIASSQARVAARKAREMVRRKSAT 357

Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
               LPGKLADC       +EL+IVEGDSAGGSAK  R+   QA+LPLRGKI+NV  +  
Sbjct: 358 DIGGLPGKLADCRSKDPAKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKSRI 417

Query: 505 EKIRNNQQIMDLVQALGCRTRSQY 528
           +K+  N ++  ++ ALG     ++
Sbjct: 418 DKVLKNAEVQAIITALGTGIHEEF 441


>gi|255065021|ref|ZP_05316876.1| DNA gyrase subunit B [Neisseria sicca ATCC 29256]
 gi|255050442|gb|EET45906.1| DNA gyrase subunit B [Neisseria sicca ATCC 29256]
          Length = 155

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 52/109 (47%), Positives = 70/109 (64%), Gaps = 4/109 (3%)

Query: 39  SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98
           + ++ Y  SSI +L+GLEPV+ RPGMY   T   +  H+  EVIDNA DE + G+A  I+
Sbjct: 2   TKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATEID 58

Query: 99  VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST 147
           V +  +G L+V DNGRGIPV  HP       +E++ T LHAGGKF+  T
Sbjct: 59  VRIHDDGSLSVHDNGRGIPVGLHP-VEGVPVVELVFTRLHAGGKFNKKT 106


>gi|110224950|dbj|BAE97464.1| DNA gyrase subunit B [Streptococcus anginosus]
          Length = 300

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 100/302 (33%), Positives = 161/302 (53%), Gaps = 12/302 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS +L V V +   I+ Q++ RG  ++ LE   +  ++ G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVRVYKNGQIYFQEYRRGHVVADLEIIGET-DRTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PDP+IF +   FD  +L K  Q  A+L+  ++   +  +E  E     + ++++
Sbjct: 60  TTVHFTPDPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKREGLE-----QTKDYH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+ +Y+Q   EN+ +I         E       TVE A+ +       + S+ N I 
Sbjct: 115 YEGGIASYVQYINENKDVIFENPIYTDGEMDDI---TVEVAMQYTTGYHETVMSFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G R ALTR I  YA+  +  +    ++  +D+      ++SV    P+F G
Sbjct: 172 THEGGTHEQGFRTALTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + +  +       + F  +L++NP  A K++E  I  S+ R+  ++ REV RK
Sbjct: 232 QTKTKLGNSEVVKITNRLFSEAFSDFLLENPAVAKKIVEKGILASKARIAAKRAREVTRK 291

Query: 442 TA 443
            +
Sbjct: 292 KS 293


>gi|106895924|gb|ABF82650.1| DNA gyrase subunit B [Aeromonas sp. MDC71]
          Length = 333

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 117/344 (34%), Positives = 185/344 (53%), Gaps = 15/344 (4%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           +T+ R   ++ Q +  G P +PL++     +  GT + F P P IF D   +    L K 
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTL-YHYEILAKR 59

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F  
Sbjct: 60  LRELSFLNSGVSIRLEDERDGRE-------MHFCYEGGIKAFVEDLNQNKTPIHPKVFHF 112

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +  
Sbjct: 113 STEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKE 169

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +
Sbjct: 170 DYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLSEF 229

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
           L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL
Sbjct: 230 LLENPSDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSEL 289

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           +IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 290 YIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 333


>gi|307343812|emb|CBJ19511.1| gyrase B subunit [Micromonospora sp. GUI27]
          Length = 345

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 99/351 (28%), Positives = 176/351 (50%), Gaps = 9/351 (2%)

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
            +  +++ Q ++   P    +   +  +  G+ ++F PDP +F     FD   + +  Q 
Sbjct: 1   HKSGSVWRQHYTNSKPSPLEK--GEATDLTGSAVSFWPDPDVFETI-DFDFQTIYRRLQE 57

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            A+L+  +      ++   ++ G   +  F + GG+  +++    +++ +   +     E
Sbjct: 58  MAFLNRGITIHLLDERVAEDEDGKTREVTFRYDGGIADFVRHLNASKNPMHKTVVEFGAE 117

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK 352
           ++G    ++E A+ W E     + ++ N I T EGGTHE G R ALT  + +Y    +  
Sbjct: 118 EEG---MSLEIAMQWNESYGESVYTFANNINTHEGGTHEEGFRSALTSVVNRYGTDKKLL 174

Query: 353 R-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           +    +  +D+      I+SV +  P+F GQTKTKL +   +  V+    D    +  +N
Sbjct: 175 KGDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWFDRN 234

Query: 412 PIEATKLLE-WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P EA  +++            ++ ++   RK+ +    +PGKLADC       +E+FIVE
Sbjct: 235 PAEAKTIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVE 294

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
           GDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG
Sbjct: 295 GDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALG 345


>gi|115381574|gb|ABI96469.1| gyrase B [Salmonella enterica subsp. enterica serovar Albany]
          Length = 323

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 113/330 (34%), Positives = 177/330 (53%), Gaps = 14/330 (4%)

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
               +K GT + F P  + F +   F+   L K  +  ++L+  V       ++  E   
Sbjct: 4   TGDTDKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--- 60

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
               + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I
Sbjct: 61  ----DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENI 113

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV 
Sbjct: 114 YCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVK 173

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRR 432
           + +P+F+ QTK KLVS + +  VE  + +    YL++ P +A  ++  +I+        R
Sbjct: 174 VPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLEKPSDAKIVVGKIIDVARAREAAR 233

Query: 433 RKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           R +  + RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL
Sbjct: 234 RAREMIRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPL 293

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           +GKILNV  A  +K+ ++Q++  L+ ALGC
Sbjct: 294 KGKILNVEKARFDKMLSSQEVATLITALGC 323


>gi|156536672|gb|ABU80440.1| gyrase B [Photorhabdus temperata]
          Length = 328

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 115/335 (34%), Positives = 172/335 (51%), Gaps = 15/335 (4%)

Query: 173 VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQ 232
             R   +  Q +  G+P SPL+   +   + GTR+ F P    F +   F    L K  +
Sbjct: 5   SRRDGKVHEQTYHLGVPQSPLKVVGET-EQTGTRVRFWPSMDTFSNNTEFQHDILAKRLR 63

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             ++L+  V       +   E       + F++ GG+K +++   +N++ I   +F   T
Sbjct: 64  ELSFLNSGVSIRLLDKRTNIE-------DHFHYKGGIKAFVEFLNKNKTPIHPNVFYFST 116

Query: 293 EKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--T 349
           EK       VE A+ W +     I  + N I   +GGTH  G R A+TR +  Y +    
Sbjct: 117 EKDSI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGY 173

Query: 350 QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
             K  +S   DD     V ++SV + +P+F+ QTK KLVS + +  VE  + +    YL+
Sbjct: 174 NKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLL 233

Query: 410 QNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFI 468
           +NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLADC +     +EL++
Sbjct: 234 ENPNDAKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYL 293

Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A 
Sbjct: 294 VEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 328


>gi|33321925|gb|AAQ06682.1|AF496023_1 DNA gyrase subunit B [Lactobacillus delbrueckii subsp. lactis]
          Length = 111

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 48/110 (43%), Positives = 65/110 (59%), Gaps = 2/110 (1%)

Query: 531 EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVY 590
              RY K+IIMTDADVDGAHI +LLLT FY+ M  +I++ ++++  PP +++ QG    Y
Sbjct: 3   SQARYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPMIDKGYVYIARPPXYQVRQGKLIKY 62

Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640
              +E     L   +     K  + R+KGLGEM A QL ET MD   R L
Sbjct: 63  LDTDEELHDYLGSLQPS--PKPIVQRYKGLGEMDAEQLWETTMDPENRRL 110


>gi|115381568|gb|ABI96466.1| gyrase B [Salmonella enterica subsp. enterica serovar Paratyphi C]
          Length = 323

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 113/330 (34%), Positives = 177/330 (53%), Gaps = 14/330 (4%)

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
               +K  T + F P  + F +   F+   L K  +  ++L+  V       ++  E   
Sbjct: 4   TGDTDKTSTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--- 60

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
               + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I
Sbjct: 61  ----DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENI 113

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV 
Sbjct: 114 YCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVK 173

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R
Sbjct: 174 VPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAAR 233

Query: 434 KQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           + R    RK A+    LPGKLADC +     +EL++VEGDSAGG AKQ RNR NQA+LPL
Sbjct: 234 RAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGFAKQGRNRKNQAILPL 293

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           +GKILNV  A  +K+ ++Q++  L+ ALGC
Sbjct: 294 KGKILNVEKARFDKMLSSQEVATLITALGC 323


>gi|92919037|gb|ABE96865.1| DNA gyrase subunit B [Aeromonas allosaccharophila]
          Length = 339

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 121/348 (34%), Positives = 187/348 (53%), Gaps = 16/348 (4%)

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
            Q +  G P +PL++        GT + F P P IF D   +    L K  +  ++L+  
Sbjct: 1   EQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFTDTL-YHYEILAKRLRELSFLNSG 58

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
           V      +++  E         F + GG+K +++   +N++ I  ++F   TE+ G    
Sbjct: 59  VSIRLLDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGI--- 108

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISI 357
            VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      K   + 
Sbjct: 109 GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAA 168

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++NP +A  
Sbjct: 169 SGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKI 228

Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVEGDSAGG
Sbjct: 229 VVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGG 288

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           SAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC  
Sbjct: 289 SAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGI 336


>gi|327343615|dbj|BAK09552.1| DNA gyrase subunit B [endosymbiont of Nysius sp. 2]
          Length = 321

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 114/332 (34%), Positives = 169/332 (50%), Gaps = 15/332 (4%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD  +Y++SGGLHGVGISVVNALS +L + + RQ  I+ Q ++ G+P + LE   +  
Sbjct: 1   GKFDEVSYKVSGGLHGVGISVVNALSQKLELIIKRQGKIYRQLYNTGVPQTRLEIISET- 59

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
           N+ GT I F P+P IF     F    L+K  +  A+L+  +      ++           
Sbjct: 60  NQTGTYIRFWPNPIIFQKNIEFKYDILVKRIRELAFLNPGLSISIQDNRINI-------H 112

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYC 319
             F   GG+K ++    +N+ LI   IF    EK      +VE A+ W          + 
Sbjct: 113 HSFKEDGGIKAFVAFLSKNKILIHPNIFYFAAEKDKI---SVEIALHWINNFQNNIYCFT 169

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH SG R A+TR I  Y +      K  ++II DD     V I+S+    P
Sbjct: 170 NNIPQRDGGTHLSGFRSAITRTINTYIDREGYNKKSKVNIIGDDTREGIVAIVSIKAHNP 229

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F+ QTK KLVS + +  VE  + + F  YL+++P +A  ++  +I  +  R   RK RE
Sbjct: 230 KFSSQTKDKLVSSEIKSAVETLMNEYFIQYLLEHPQDAKLIVGKIISAARTREAARKVRE 289

Query: 438 VNRKTA-IRKLRLPGKLADCSQNIAHGTELFI 468
           + RK   +    L GKLADC +      EL++
Sbjct: 290 ITRKKGTLDLSILSGKLADCQEKNPILNELYL 321


>gi|307343856|emb|CBJ19533.1| gyrase B subunit [Micromonospora sp. SGA5]
          Length = 345

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 98/349 (28%), Positives = 174/349 (49%), Gaps = 9/349 (2%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           V + +   ++ Q+++   P    +   +  ++ G+ ++F PDP +F     FD   + + 
Sbjct: 2   VEIHKSGFVWRQQYANSKPTPLEK--GESTDRTGSAVSFWPDPDVFETV-DFDFQTIYRR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            Q  A+L+  +      ++    + G   +  F + GG+  +++    +++ +   +   
Sbjct: 59  LQEMAFLNRGITIHLLDERVPEGEEGKIREVTFRYDGGIADFVRHLNASKNPMHKTVVEF 118

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
             E++G    +VE A+ W E     + ++ N I T EGGTHE G R ALT  + +Y    
Sbjct: 119 DAEEEG---MSVEIAMQWNESYGESVYTFANNINTHEGGTHEEGFRSALTSVVNRYGTDK 175

Query: 350 QNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
           +  +    +  +D+      I+SV +  P+F GQTKTKL +   +  V+    D    + 
Sbjct: 176 KLLKGDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWF 235

Query: 409 VQNPIEATKLLE-WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
            +NP EA  +++            ++ ++   RK+ +    +PGKLADC       +E+F
Sbjct: 236 DRNPAEAKTIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVF 295

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           IVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L
Sbjct: 296 IVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQAL 344


>gi|307343828|emb|CBJ19519.1| gyrase B subunit [Micromonospora sp. GUI61]
          Length = 340

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 99/346 (28%), Positives = 175/346 (50%), Gaps = 9/346 (2%)

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
           + Q ++   P    +   +  ++ G+ ++F PDP +F     FD   + +  Q  A+L+ 
Sbjct: 1   WRQHYTNSKPSPLEK--GEATDRTGSAVSFWPDPDVFETI-DFDFQTIYRRLQEMAFLNR 57

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            +      ++   ++ G   +  F + GG+  +++    +++ +   +   + E++G   
Sbjct: 58  GITIHLLDERVAEDEDGKTREVTFRYDGGIADFVRHLNASKNPMHKTVVEFEAEEEG--- 114

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR-AISI 357
            ++E A+ W E     + ++ N I T EGGTHE G R ALT  + +Y    +  +    +
Sbjct: 115 MSLEIAMQWNESYGESVYTFANNINTHEGGTHEEGFRSALTSVVNRYGTDKKLLKGDEKL 174

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             +D+      I+SV +  P+F GQTKTKL +   +  V+    D    +  +NP EA  
Sbjct: 175 SGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTPVKSFVQRVCNDRLVDWFDRNPAEAKT 234

Query: 418 LLE-WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           +++            ++ ++   RK+ +    +PGKLADC       +E+FIVEGDSAGG
Sbjct: 235 IIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIVEGDSAGG 294

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           SAKQ R+   QA+LP+RGKILNV  A  +++  N ++  L+ ALG 
Sbjct: 295 SAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGT 340


>gi|115381578|gb|ABI96471.1| gyrase B [Salmonella enterica subsp. enterica serovar Albany]
          Length = 323

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 115/330 (34%), Positives = 179/330 (54%), Gaps = 14/330 (4%)

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
               +K GT   F P  + F +   F+   L K  +  ++L+  V       ++  E   
Sbjct: 4   TGDTDKTGTMGRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--- 60

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
               + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I
Sbjct: 61  ----DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENI 113

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +G TH +G R A+TR +  Y +      K  +S   DD     + ++SV 
Sbjct: 114 YCFTNNIPQRDGVTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVK 173

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R
Sbjct: 174 VPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAAR 233

Query: 434 KQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           + RE+  RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL
Sbjct: 234 RAREMIRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPL 293

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           +GKILNV  A  +K+ ++Q++  L+ ALGC
Sbjct: 294 KGKILNVEKARFDKMLSSQEVATLITALGC 323


>gi|115381644|gb|ABI96504.1| gyrase B [Salmonella enterica subsp. enterica serovar Java]
          Length = 323

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 113/330 (34%), Positives = 177/330 (53%), Gaps = 14/330 (4%)

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
               +K GT + F P  + F +   F+   L K  +  ++L+  V       ++  E   
Sbjct: 4   TGDTDKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--- 60

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
               + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I
Sbjct: 61  ----DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENI 113

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV 
Sbjct: 114 YCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVK 173

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R
Sbjct: 174 VPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAAR 233

Query: 434 KQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           + R    RK A+    LPGKLADC +     +EL++VEGDSAGG AKQ RNR N A+LPL
Sbjct: 234 RAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGFAKQGRNRKNPAILPL 293

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           +GKILNV  A  +K+ ++Q++  L+ ALGC
Sbjct: 294 KGKILNVEKARFDKMLSSQEVATLITALGC 323


>gi|193788057|dbj|BAG50529.1| DNA gyrase subunit B [bacterium GMW-27]
          Length = 347

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 118/355 (33%), Positives = 186/355 (52%), Gaps = 15/355 (4%)

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
            R   ++ Q ++ G+P +P+++        GT I F P    F D   F    L K  + 
Sbjct: 1   RRAGKVYEQFYTHGVPDAPIKEIGDATK-TGTEIRFWPSEDTFSDV-EFHFEILAKRVRE 58

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            ++L+  V      +++        + E F + GG+  ++     N++ ++ ++F    E
Sbjct: 59  LSFLNSGVGIRLVDERDN-------KNEFFKYEGGISAFVDYLNRNKTPVNKDVFHFMQE 111

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQ 350
           ++     TVE A+ W +     I  + N I   +GGTH  G R ALTR +  Y E     
Sbjct: 112 RED--GITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLVGFRSALTRNLNSYMENEGYN 169

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            K   S   DD       ++SV + +P+F+ QTK KLVS + +  VE  + +  + YL++
Sbjct: 170 KKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEKLNDYLLE 229

Query: 411 NPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           NP +A  ++  +++ +  R   RK R    RK A+    LPGKLADC +     +E++IV
Sbjct: 230 NPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIV 289

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           EGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC  
Sbjct: 290 EGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 344


>gi|308197535|gb|ADO17805.1| GyrB [Vibrio scophthalmi LMG 19158]
          Length = 294

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 92/290 (31%), Positives = 154/290 (53%), Gaps = 12/290 (4%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   + +Q +  G P +PL    
Sbjct: 1   HAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIWRGGHVHTQTYCHGEPQAPLAVIA 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
                 GT+I F P  + F +   F    L K  +  ++L+  V      ++E       
Sbjct: 61  DTEK-TGTKIRFWPSDQTFTNVLEFHYDILAKRLRELSFLNSGVSIKLIDERE------E 113

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
            + + F F GG++ +++    N++ I  +IF    E++     TVE A+ W +     I 
Sbjct: 114 DKSDHFEFEGGIQAFVEHLNTNKTPIIEKIFHFDFERED--GITVEVAMQWNDGFQENIY 171

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
            + N I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV +
Sbjct: 172 CFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKV 231

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            +P+F+ QTK KLVS + +  VE+A+ +    +L++NP EA  +   +I+
Sbjct: 232 PDPKFSSQTKDKLVSSEVKSAVESAMGEKLAEFLIENPTEAKMVCSKIID 281


>gi|109895380|gb|ABG47459.1| DNA topoisomerase IV subunit B [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 139

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 60/143 (41%), Positives = 88/143 (61%), Gaps = 8/143 (5%)

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
           +R  QA+LPLRGK+LN   A    I  N++I  +V  +G    S +  ED+ Y+K+IIMT
Sbjct: 1   DRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGSDFNLEDINYDKIIIMT 60

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT----KSVYAHDEEHKQ 598
           DAD DGAHI +LLLTFFY+ M  L+E  H+++  PPL+++++G     K  YA  +   +
Sbjct: 61  DADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKTEKVSYAWTDGELE 120

Query: 599 KILEEFKKHGKGKIEISRFKGLG 621
            + +EF K       + R+KGLG
Sbjct: 121 DLRKEFGKGAI----LQRYKGLG 139


>gi|148762405|dbj|BAF63904.1| DNA gyrase subunit B [Virgibacillus carmonensis]
          Length = 325

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 113/336 (33%), Positives = 170/336 (50%), Gaps = 15/336 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG SVVNALS  L V V     +    F RG+P   L+      +  GT I
Sbjct: 1   YKVFGGLHGVGASVVNALSSNLEVYVHLDGNVHFLGFERGVPQEELKVIGDT-DITGTII 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PD +IF +   +D   L    +  A+L+  +       +   E         +Y+ G
Sbjct: 60  HFKPDTEIFTETTTYDFDTLALRVRELAFLNKGLSISLEDKRNDEE------PVNYYYEG 113

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+ +Y++    +R ++    F  + E +G    TVE AI + +     I S+ N I T E
Sbjct: 114 GISSYVEYINSSREVLHVP-FYTEAEDQGI---TVEVAIQYNDGFASNIYSFANNIHTHE 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTHESG +  LTR I  YA      +    ++  DD+      I+S+   +P+F GQTK
Sbjct: 170 GGTHESGFKTGLTRVINDYARRNNLFKENDPNLTGDDVREGMAAIISIKHPDPQFEGQTK 229

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTA 443
           +KL   + +   ++   + F  +L +NP  A  ++E  ++        ++ +    RK+A
Sbjct: 230 SKLGGSEVRTVTDSMFSEAFSKFLFENPSVAKIVVEKGLMASRARAAAKKARELTRRKSA 289

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADCS   A  +EL+IVEGDSAGGSAK
Sbjct: 290 LEISNLPGKLADCSSKDAKISELYIVEGDSAGGSAK 325


>gi|313870865|gb|ADR82322.1| DNA gyrase subunit B [Yersinia sp. Y25]
          Length = 209

 Score =  164 bits (414), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 70/221 (31%), Positives = 115/221 (52%), Gaps = 13/221 (5%)

Query: 116 IPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR 175
           IP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L + + R
Sbjct: 1   IPTGMHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRR 59

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
              +  Q +  G+P +PL+   +  +  GT + F P  + F +   F    L K  +  +
Sbjct: 60  DGKVHEQTYKMGVPQAPLKMVGET-DLTGTTVRFWPSFQTFTNNIEFQYEILAKRLRELS 118

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       +   E       + F++ GG++ +++   +N++ I  ++F   T K 
Sbjct: 119 FLNSGVSIKLKDKRNDRE-------DHFHYEGGIRAFVEYLSKNKNPIHPKVFYFSTMKD 171

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
                 VE A+ W +     I  + N I   +GGTH  G R
Sbjct: 172 DI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFR 209


>gi|206208320|gb|ACI06116.1| DNA gyrase subunit B [Parvibaculum sp. P31]
          Length = 371

 Score =  164 bits (414), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 138/380 (36%), Positives = 193/380 (50%), Gaps = 19/380 (5%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN------KRGTRITFRPDPKIF 216
           NALSD L + V R        F  G+  +PL  K             GT ITF P  + F
Sbjct: 1   NALSDWLTLRVWRNGKEHLITFKDGVADAPLAVKGDAPKGADGEPVTGTEITFHPSSETF 60

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                FD   L    +  A+L+  V+   + ++ + EK       + Y+ GGLK +++  
Sbjct: 61  TKT-EFDFPTLEHRLRELAFLNSGVRIELTDNRHVEEKK-----VDLYYEGGLKAFVEFL 114

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335
              +S +     T  TE++G    TVE A+ W +   E    + N I   +GGTH +G R
Sbjct: 115 DRTKSPLVPAPITVLTEREGI---TVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFR 171

Query: 336 VALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR +  YA  T   +   +    DD       +LSV + +P+F+ QTK KLVS + +
Sbjct: 172 GALTRVVNAYASETGIAKREKVTISGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVR 231

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
             VE AL +    +  ++P EA +++  + E +  R   RK RE   RK A+    LPGK
Sbjct: 232 PVVEGALHEALSSWFEEHPNEAKQIVSKIAEAAAAREAARKARELTRRKGALDVSSLPGK 291

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +      ELFIVEGDSAGGSAKQAR+R+NQAVLPLRGKILNV  A  +K+ ++ +
Sbjct: 292 LADCQERDPSKAELFIVEGDSAGGSAKQARDRANQAVLPLRGKILNVERARFDKMLSSNE 351

Query: 513 IMDLVQALGCRTRSQYREED 532
           I  L+ ALG          D
Sbjct: 352 IGTLITALGTGIGRDDFNID 371


>gi|110225008|dbj|BAE97493.1| DNA gyrase subunit B [Streptococcus ratti]
          Length = 300

 Score =  164 bits (414), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 104/302 (34%), Positives = 157/302 (51%), Gaps = 12/302 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS +L V V +   I  Q++ RG+    L+      +  G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVRVHKNGKIHFQEYYRGVVADDLKVIGDT-DITG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PDP+IF +   FD  +L K  Q  A+L+  ++   +  +   EK      EEF+
Sbjct: 60  TIVHFTPDPEIFTETTEFDFDKLAKRIQELAFLNKGLRISITDKRPGQEKS-----EEFH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+ +Y++   EN+ +I +       E  G    TVE A+ +       I S+ N I 
Sbjct: 115 YEGGIVSYVEFINENKDVIFNHPIYTDGEMDGI---TVEVAMQYTSGFHENIMSFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G R ALTR I  YA+  +   +   ++  +D+      I+SV    P+F G
Sbjct: 172 THEGGTHEQGFRTALTRVINDYAKKNKILKENEDNLTGEDVREGLTAIISVKHPNPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + +  +       D    +L++NP  A K++E  I  S+ R+  ++ REV RK
Sbjct: 232 QTKTKLGNSEVVKITNRLFSDALSRFLLENPQTAKKIVEKGILASKARIAAKRAREVTRK 291

Query: 442 TA 443
            +
Sbjct: 292 KS 293


>gi|156536674|gb|ABU80441.1| gyrase B [Photorhabdus temperata]
          Length = 329

 Score =  164 bits (414), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 115/334 (34%), Positives = 172/334 (51%), Gaps = 15/334 (4%)

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
            R   +  Q +  G+P SPL+   +   + GTR+ F P    F +   F    L K  + 
Sbjct: 7   RRDGKVHEQTYHLGVPQSPLKVVGET-EQTGTRVRFWPSMDTFSNNTEFQHDILAKRLRE 65

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            ++L+  V       +   E       + F++ GG+K +++   +N++ I   +F   TE
Sbjct: 66  LSFLNSGVSIRLLDKRTNIE-------DHFHYKGGIKAFVEFLNKNKTPIHPNVFYFSTE 118

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQ 350
           K       VE A+ W +     I  + N I   +GGTH  G R A+TR +  Y +     
Sbjct: 119 KDSI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYN 175

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            K  +S   DD     V ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++
Sbjct: 176 KKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLE 235

Query: 411 NPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLADC +     +EL++V
Sbjct: 236 NPNDAKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLV 295

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           EGDSAGGSAKQ RNR NQA+LPL+GKILNV  A 
Sbjct: 296 EGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 329


>gi|308197533|gb|ADO17804.1| GyrB [Vibrio ichthyoenteri ATCC 700023]
          Length = 293

 Score =  164 bits (414), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 92/290 (31%), Positives = 154/290 (53%), Gaps = 12/290 (4%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   + +Q +  G P +PL    
Sbjct: 1   HAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIWRGGHVHTQTYCHGEPQAPLAVIA 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
                 GT+I F P  + F +   F    L K  +  ++L+  V      ++E       
Sbjct: 61  DTEK-TGTKIRFWPSDQTFTNVLEFHYDILAKRLRELSFLNSGVSIKLIDERE------E 113

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
            + + F F GG++ +++    N++ I  +IF    E++     TVE A+ W +     I 
Sbjct: 114 DKSDHFEFEGGIQAFVEHLNTNKTPIIDKIFHFDFERED--GITVEVAMQWNDGFQENIY 171

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
            + N I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV +
Sbjct: 172 CFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKV 231

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            +P+F+ QTK KLVS + +  VE+A+ +    +L++NP EA  +   +I+
Sbjct: 232 PDPKFSSQTKDKLVSSEVKSAVESAMGEKLAEFLIENPTEAKMVCSKIID 281


>gi|28865598|emb|CAD48113.1| gyrase B subunit [Haemophilus influenzae]
          Length = 128

 Score =  164 bits (414), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 66/127 (51%), Positives = 95/127 (74%), Gaps = 1/127 (0%)

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RS 526
           +VEGDSAGGSAK  R+R  QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC   R 
Sbjct: 1   LVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLITALGCGIGRD 60

Query: 527 QYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT 586
           +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++  PPL+++ +G 
Sbjct: 61  EYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPPLYKVKKGK 120

Query: 587 KSVYAHD 593
           +  Y  D
Sbjct: 121 QERYIKD 127


>gi|82400104|gb|ABB72791.1| DNA gyrase beta subunit [Shewanella sp. G5]
          Length = 313

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 92/292 (31%), Positives = 154/292 (52%), Gaps = 14/292 (4%)

Query: 136 TLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK 195
            LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L +T+ R   ++ Q ++ G+P +P+++
Sbjct: 1   VLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLQMTIRRAGKVYEQFYTHGVPDAPIKE 60

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
                   GT I F P    F D   F    L K  +  ++L+  V      +++     
Sbjct: 61  IGDATK-TGTEIRFWPSEDTFSD-VEFHFEILAKRVRELSFLNSGVGIRLVDERDN---- 114

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PE 314
              + E F + GG+  ++     N++ ++ ++F    E++     TVE A+ W +     
Sbjct: 115 ---KNEFFKYEGGISAFVDYLNRNKTPVNKDVFHFMQERED--GITVEVAMQWNDGYQEN 169

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSV 372
           I  + N I   +GGTH  G R ALTR +  Y E      K   S   DD       ++SV
Sbjct: 170 IFCFTNNIPQRDGGTHLVGFRSALTRNLNSYMENEGYNKKGKTSATGDDAREGLTAVISV 229

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            + +P+F+ QTK KLVS + +  VE  + +  + YL++NP +A  ++  +++
Sbjct: 230 KVPDPKFSSQTKDKLVSSEVKTAVEQTMGEKLNDYLLENPADAKLIVGKIVD 281


>gi|210062262|gb|ACJ06180.1| GyrB [Aeromonas caviae]
          Length = 331

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 121/343 (35%), Positives = 184/343 (53%), Gaps = 16/343 (4%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F  
Sbjct: 1   LSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHY 58

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             L K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I 
Sbjct: 59  EILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIH 111

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
            ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR + 
Sbjct: 112 PKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLN 168

Query: 344 KYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ 
Sbjct: 169 NYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMG 228

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNI 460
           +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +  
Sbjct: 229 EKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKD 288

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
              +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A 
Sbjct: 289 PALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 331


>gi|326314822|gb|ADZ53067.1| DNA gyrase subunit B [Kribbella sp. XMU198]
          Length = 274

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 100/262 (38%), Positives = 147/262 (56%), Gaps = 3/262 (1%)

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD+      I+SV + EP+F GQTKTKL + + +  V+  + D    +  QNP E  +
Sbjct: 3   TGDDIREGLTAIISVKLGEPQFEGQTKTKLGNTEVKGFVQKVVNDKLGAWFEQNPAEGRE 62

Query: 418 LLEWVIERSEERLRRRKQRE--VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
           ++      +  R+  RK R+   NRK  +    LPGKL+DC        E++IVEGDSAG
Sbjct: 63  IIRKATAAASARIAARKARDLARNRKGLLGGGGLPGKLSDCQSTNPEECEVYIVEGDSAG 122

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535
           GSAK  R+   QA+LP+RGKILNV  A  +K+  N ++  ++ ALG      + EE LRY
Sbjct: 123 GSAKGGRDPKFQAILPIRGKILNVEKARIDKVLQNNEVQAIISALGTGIHEDFDEEKLRY 182

Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVY-AHDE 594
            K++IM DADVDG HI +LLLT  ++ M  LIE+ H++   PPL+++     +   A+ E
Sbjct: 183 HKIVIMADADVDGQHIRTLLLTLLFRFMRPLIERGHVYAAQPPLYKLRWSNATHELAYTE 242

Query: 595 EHKQKILEEFKKHGKGKIEISR 616
             K  ++    + GK   +  R
Sbjct: 243 REKDGLVAAGAEAGKKFPKGQR 264


>gi|110224982|dbj|BAE97480.1| DNA gyrase subunit B [Streptococcus hyovaginalis]
          Length = 300

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 101/302 (33%), Positives = 156/302 (51%), Gaps = 12/302 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS +L V V +   I+ Q++ RG+ +  L    +  + +G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVKVHKNGQIYYQEYQRGVVVDDLTVIGET-DLQG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PDP IF +   +D A+L K  Q  A+L+  ++   +  +E  E         F+
Sbjct: 60  TTVHFTPDPDIFTETTEYDYAKLAKRVQELAFLNKGLRISITDKREGKEVSQE-----FH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+ +Y+    EN+  I         E +G    TVE A+ +       I S+ N I 
Sbjct: 115 YEGGIASYVDYINENKETIFETPIFTDGEMEGI---TVEVAMQYTTGYHETIMSFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G R ALTR I  YA       ++  ++  DD+      ++SV    P+F G
Sbjct: 172 THEGGTHEQGFRTALTRVINDYARQNNILKEKDDNLTGDDVREGLTAVISVKHPNPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + +  +       + F  +L++NP  A +++E  I  S+ R+  ++ REV RK
Sbjct: 232 QTKTKLGNSEVVKITNRLFSEAFSRFLLENPQIARRIVEKGILASKARIAAKRAREVTRK 291

Query: 442 TA 443
            +
Sbjct: 292 KS 293


>gi|115381464|gb|ABI96414.1| gyrase B [Salmonella enterica subsp. enterica serovar Kottbus]
 gi|115381550|gb|ABI96457.1| gyrase B [Salmonella enterica subsp. enterica serovar Heidelberg]
          Length = 323

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 113/328 (34%), Positives = 177/328 (53%), Gaps = 14/328 (4%)

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
               +K GT + F P  + F +   F+   L K  +  ++L+  V       ++  E   
Sbjct: 4   TGDTDKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--- 60

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
               + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I
Sbjct: 61  ----DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENI 113

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV 
Sbjct: 114 YCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVK 173

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R
Sbjct: 174 VPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAAR 233

Query: 434 KQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           + R    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL
Sbjct: 234 RAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPL 293

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQAL 520
           +GKILNV  A  +K+ ++Q++  L+ AL
Sbjct: 294 KGKILNVEKARFDKMLSSQEVATLITAL 321


>gi|307592562|gb|ADN65369.1| DNA gyrase subunit B [Flavobacteriaceae bacterium JJC]
          Length = 171

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 79/171 (46%), Positives = 115/171 (67%), Gaps = 6/171 (3%)

Query: 428 ERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R   +K    V+RK+ +    LPGKL+DCS      +ELF+VEGDSAGG+AKQ R+R  
Sbjct: 1   ARQAAKKAGELVHRKSPMGGSGLPGKLSDCSSKDPAISELFLVEGDSAGGTAKQGRDRHF 60

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY-----REEDLRYEKVIIM 541
           QA+LPLRGKILNV  +   K+ +N++I ++  ALG    ++          LRY KV+IM
Sbjct: 61  QAILPLRGKILNVEKSMLHKVYDNEEIKNIYTALGVSVGTEEDSKALNITKLRYHKVVIM 120

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAH 592
           TDAD+DG+HI++L+LTFF++ M +LIE  ++++  PPL+ + +G K VYA+
Sbjct: 121 TDADIDGSHISTLILTFFFRYMKELIENGYIYIAQPPLYLLKKGNKKVYAY 171


>gi|261362388|gb|ACX71595.1| DNA gyrase subunit B [Pseudomonas fuscovaginae]
          Length = 344

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 117/355 (32%), Positives = 183/355 (51%), Gaps = 16/355 (4%)

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225
           S+EL +TV R   I+ Q +  G+P +P+          GT+I F+   + F +   F   
Sbjct: 1   SEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGD-SETTGTQIHFKASAETFKNIH-FSWD 58

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
            L K  +  ++L+  V      ++         ++E F + GGL+ +++    N++ ++ 
Sbjct: 59  ILAKRIRELSFLNSGVGILLRDER-------TGKEEVFRYEGGLRAFVEYLNTNKTTVNQ 111

Query: 286 EIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKK 344
                   + G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  
Sbjct: 112 VFHFNIQREDGI---GVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNN 168

Query: 345 YAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRD 402
           Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  VE  +  
Sbjct: 169 YIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKGAVEQEMGK 228

Query: 403 PFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIA 461
            F  +L++NP EA  ++  +I+ +  R   RK R    RK A+    LPGKLADC +   
Sbjct: 229 YFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDP 288

Query: 462 HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
             +EL++VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++  L
Sbjct: 289 ALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTL 343


>gi|89143214|emb|CAJ57504.1| DNA gyrase subunit B [Microbacterium terregens]
          Length = 353

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 113/350 (32%), Positives = 172/350 (49%), Gaps = 16/350 (4%)

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G+P +PLE+ E+  +  GT ITF PD  IF     FD   L    Q  A+L+  ++    
Sbjct: 6   GVPQAPLERAEESPD-TGTTITFWPDDSIFETV-DFDYDTLRTRFQQMAFLNKGLRIDLV 63

Query: 247 CDK---------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKG 296
            ++            E       + F +  GL  Y++     R            E +  
Sbjct: 64  DERPGAAYEQEVSPGEVVLQQPNDSFLYERGLVDYVEYLNRVRKAEHVHEDIIDFETEDT 123

Query: 297 THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKR 353
             +  +E A+ W       + +Y NTI T EGGTHE G R ALT  + KYA       ++
Sbjct: 124 ERKIALEVAMQWTTSYTENVFTYANTINTHEGGTHEEGFRAALTTLVNKYARANSLLKEK 183

Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
             ++  DD+      ++SV + EP+F GQTKTKL + +A+  V+  + D    +  +NP 
Sbjct: 184 DENLSGDDVREGLTAVISVKLAEPQFEGQTKTKLGNTEAKAFVQKVVGDRLGDWFDRNPA 243

Query: 414 EATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGD 472
           +A  ++   I+ +  RL  RK RE  R+ +      +P KL DC+      +E+F+VEGD
Sbjct: 244 QAKNVVRKAIDAATARLAARKARETARRKSVFESAAMPDKLKDCTSKDPSISEIFLVEGD 303

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           SAGGSA Q R+   QA+L LRGKILNV  A  ++   N+++  ++QA G 
Sbjct: 304 SAGGSAVQGRDPHTQAILALRGKILNVERARLDRALGNKEVQAMIQAFGT 353


>gi|195926966|dbj|BAG68370.1| gyrase B [Campylobacter fetus subsp. fetus]
          Length = 340

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 122/353 (34%), Positives = 184/353 (52%), Gaps = 17/353 (4%)

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L + + R   ++ Q+FS+GIP + LE   K  N+ GT + F PD  IF    
Sbjct: 1   VVNALSKKLILNIKRDGNLYRQEFSKGIPQNILEAV-KTTNRTGTSVEFWPDDDIFEVT- 58

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   L K  +  AYL+ R+   +   ++          E ++F GGL++++    ++ 
Sbjct: 59  EFDKQILSKRFKELAYLNPRITINFKDQRD-------GFSETYHFEGGLESFVTDINKSN 111

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
            +  +  F+G  E+       + +   + E    + S+ N I T +GGTHE+G R  LTR
Sbjct: 112 PVSKAVSFSG-GEEDVIVDFALLYNETYTEN---LLSFVNNIKTPDGGTHEAGFRAGLTR 167

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  Y        ++   I  DD+    + I+SV + EP+F GQTK KL S   +  V+ 
Sbjct: 168 AITNYIAANAAAREKDTKITGDDIREGLIAIVSVKVPEPQFEGQTKGKLGSSYVKPIVQK 227

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE--VNRKTAIRKLRLPGKLADC 456
              D    Y  +NPIEA  ++   +  +  R   +K R+    + +      LPGKLADC
Sbjct: 228 MTFDVLCKYFEENPIEAKAIMNKALMAARGREAAKKARDLTRKKDSLNSVGTLPGKLADC 287

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
                  +E+++VEGDSAGGSAKQ R+R+ QA+LPLRGKILNV  +  +KI  
Sbjct: 288 QSKDPSESEIYLVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKSRLDKILK 340


>gi|30793694|gb|AAM52909.1| DNA gyrase subunit beta [Aeromonas veronii]
          Length = 320

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 116/332 (34%), Positives = 176/332 (53%), Gaps = 16/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPAIFSDTL-FHYEILAKRLREL 58

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 59  SFLNSGVSIRLQDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 111

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 112 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSE 168

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 169 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLEN 228

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 229 PGDAKIVVNKIIDAARPREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 288

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 289 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 320


>gi|195926968|dbj|BAG68371.1| gyrase B [Campylobacter hyointestinalis]
          Length = 340

 Score =  163 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 119/354 (33%), Positives = 183/354 (51%), Gaps = 19/354 (5%)

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L + + R   +  Q+F+ GIP S LE   K  N+ GT + F PD  IF    
Sbjct: 1   VVNALSKKLVLNIKRDGKLHRQEFAEGIPQSDLEVI-KTTNRTGTSVEFWPDDTIFE-IT 58

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   L K  +  AYL+ ++   +   ++  +       E ++F GGL++++    ++ 
Sbjct: 59  KFDREILAKRFKELAYLNPKITINFKDQRDGFK-------ESYHFDGGLESFVTDMNKSN 111

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALT 339
            +  +  F+G     G     V++A+ + +   E   S+ N I T +GGTHE+G R  LT
Sbjct: 112 PVSKAVSFSG-----GEDDVIVDFALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRAGLT 166

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R I  Y        ++   I  DD+    + ++SV + EP+F GQTK KL S   +   +
Sbjct: 167 RAITNYIAANAAAREKDTKITGDDIREGLIAVISVKVPEPQFEGQTKGKLGSSYVKPIGQ 226

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE--VNRKTAIRKLRLPGKLAD 455
               +    Y  +NP EA  ++   +  +  R   +K R+    + +      LPGKLAD
Sbjct: 227 KMTFEVLCKYFEENPNEAKAIMNKALMAARGREAAKKARDLTRKKDSLNSVGTLPGKLAD 286

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           C       +E+++VEGDSAGGSAKQ R+R+ QA+LPLRGKILNV  +  +KI  
Sbjct: 287 CQSKDPSESEIYLVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKSRLDKILK 340


>gi|320202791|emb|CBZ01768.1| DNA gyrase subunit B [Aeromonas sp. P1D3]
          Length = 332

 Score =  163 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 119/344 (34%), Positives = 184/344 (53%), Gaps = 16/344 (4%)

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225
           SD+L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   +   
Sbjct: 1   SDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFTDTL-YHYE 58

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
            L K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I  
Sbjct: 59  ILAKRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHP 111

Query: 286 EIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKK 344
           ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  
Sbjct: 112 KVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNS 168

Query: 345 YAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRD 402
           Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +
Sbjct: 169 YMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGE 228

Query: 403 PFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIA 461
               +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +   
Sbjct: 229 KLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDP 288

Query: 462 HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
             +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +
Sbjct: 289 ALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 332


>gi|110225010|dbj|BAE97494.1| DNA gyrase subunit B [Streptococcus sanguinis]
          Length = 300

 Score =  163 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 99/302 (32%), Positives = 160/302 (52%), Gaps = 12/302 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS +L V V +   I  Q++ RG  ++ LE   +  ++ G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEYRRGHVVADLEIIGET-DRTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PDP+IF +   FD  +L K  Q  A+L+  ++   +  ++  E     + ++++
Sbjct: 60  TTVHFTPDPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKRDGME-----QVKDYH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+ +Y+Q   EN+ +I         E       TVE A+ +       + S+ N I 
Sbjct: 115 YEGGIASYVQYINENKDVIFETPIYTDGEMDDI---TVEVAMQYTTGYHETVMSFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G R ALTR I  YA+  +  +    ++  +D+      ++SV    P+F G
Sbjct: 172 THEGGTHEQGFRTALTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + +  +       + F  +L++NP  A K++E  I  S+ R+  ++ REV RK
Sbjct: 232 QTKTKLGNSEVVKITNRLFSEAFSDFLLENPAVARKIVEKGILASKARIAAKRAREVTRK 291

Query: 442 TA 443
            +
Sbjct: 292 KS 293


>gi|195947060|dbj|BAG68440.1| gyrase B [Campylobacter fetus]
 gi|195947062|dbj|BAG68441.1| gyrase B [Campylobacter fetus subsp. venerealis]
          Length = 340

 Score =  163 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 121/353 (34%), Positives = 184/353 (52%), Gaps = 17/353 (4%)

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS +L + + R   ++ Q+FS+GIP + LE   K  N+ GT + F PD  IF    
Sbjct: 1   VVNALSKKLILNIKRDGNLYRQEFSKGIPQNILEAV-KTTNRTGTSVEFWPDDDIFEVT- 58

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   L K  +  AYL+ ++   +   ++          E ++F GGL++++    ++ 
Sbjct: 59  EFDKQILSKRFKELAYLNPKITINFKDQRD-------GFSETYHFEGGLESFVTDINKSN 111

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340
            +  +  F+G  E+       + +   + E    + S+ N I T +GGTHE+G R  LTR
Sbjct: 112 PVSKAVSFSG-GEEDVIVDFALLYNETYTEN---LLSFVNNIKTPDGGTHEAGFRAGLTR 167

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            I  Y        ++   I  DD+    + I+SV + EP+F GQTK KL S   +  V+ 
Sbjct: 168 AITNYIAANAAAREKDTKITGDDIREGLIAIVSVKVPEPQFEGQTKGKLGSSYVKPIVQK 227

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE--VNRKTAIRKLRLPGKLADC 456
              D    Y  +NPIEA  ++   +  +  R   +K R+    + +      LPGKLADC
Sbjct: 228 MTFDVLCKYFEENPIEAKAIMNKALMAARGREAAKKARDLTRKKDSLNSVGTLPGKLADC 287

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
                  +E+++VEGDSAGGSAKQ R+R+ QA+LPLRGKILNV  +  +KI  
Sbjct: 288 QSKDPSESEIYLVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKSRLDKILK 340


>gi|324962670|gb|ADY62437.1| gyrase subunit B [Frankia sp. NRRLB-16322]
          Length = 264

 Score =  163 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 86/270 (31%), Positives = 127/270 (47%), Gaps = 10/270 (3%)

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G + V DNGRGIPV  HP      T+E++LTTLHAGGKFD  +Y +SGGLHGVG+
Sbjct: 1   TLVADGGVRVTDNGRGIPVGEHP-VKKIPTVELVLTTLHAGGKFDGESYAVSGGLHGVGV 59

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS  L V +      + Q +    P  PL +    +      ITF  DP IF   
Sbjct: 60  SVVNALSTRLDVEIQTDGHSWFQPYENSRPARPLAQTGTSKKTGT-TITFWADPTIFET- 117

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDK---EIAEKYGIPEKEEFYFPGGLKTYLQTK 276
             +    L +  Q  A+L+  +      ++      E+   P +  F +  GL  ++   
Sbjct: 118 TTYKYETLFRRLQEMAFLNKGLSITLRDERGKATETEEAAEPTEVTFKYDNGLVDFVGHL 177

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
              +  +   + + +++  G      E A+ W       + ++ NTI T EGGTHE G R
Sbjct: 178 NATKDAVHRSVISLESKGIGI---EAELAMQWNSGYNESVYTFANTINTHEGGTHEEGFR 234

Query: 336 VALTRGIKKYAELTQNKRAISIISDDLMIS 365
            ALT  +  YA+     +     S +    
Sbjct: 235 AALTSAVNAYAKDQNLLKPFKAGSKNSDER 264


>gi|30793696|gb|AAM52910.1| DNA gyrase subunit beta [Aeromonas sp. CFAE35]
          Length = 320

 Score =  163 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 117/332 (35%), Positives = 177/332 (53%), Gaps = 16/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEILAKRLREL 58

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 59  SFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 111

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 112 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSE 168

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV +R+P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 169 KAKSAASGDDVREGLIAVISVKVRDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLEN 228

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 229 PGDAKIVVNKIIDAARPREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 288

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 289 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 320


>gi|313870845|gb|ADR82312.1| DNA gyrase subunit B [Yersinia pseudotuberculosis]
 gi|313870847|gb|ADR82313.1| DNA gyrase subunit B [Yersinia pseudotuberculosis]
 gi|313870849|gb|ADR82314.1| DNA gyrase subunit B [Yersinia pseudotuberculosis]
 gi|313870851|gb|ADR82315.1| DNA gyrase subunit B [Yersinia pseudotuberculosis]
 gi|313870853|gb|ADR82316.1| DNA gyrase subunit B [Yersinia pseudotuberculosis]
 gi|313870855|gb|ADR82317.1| DNA gyrase subunit B [Yersinia pseudotuberculosis]
 gi|313870857|gb|ADR82318.1| DNA gyrase subunit B [Yersinia pseudotuberculosis]
 gi|313870863|gb|ADR82321.1| DNA gyrase subunit B [Yersinia pseudotuberculosis]
 gi|313870869|gb|ADR82324.1| DNA gyrase subunit B [Yersinia pseudotuberculosis]
          Length = 209

 Score =  163 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 116/221 (52%), Gaps = 13/221 (5%)

Query: 116 IPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR 175
           IP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L + + R
Sbjct: 1   IPTGMHDE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRR 59

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL+   +   + GT + F P  + F +   F    L K  +  +
Sbjct: 60  EGKVHEQTYKMGVPQAPLKVVGET-EQTGTTVRFWPSFQTFTNNTEFQYEILAKRLRELS 118

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       +   E       + F++ GG+K +++   +N++ I  ++F   T K 
Sbjct: 119 FLNSGVSIKLKDKRNDKE-------DHFHYEGGIKAFVEYLNKNKNPIHPKVFYFSTMKD 171

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
                 VE A+ W +     I  + N I   +GGTH  G R
Sbjct: 172 DI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFR 209


>gi|156536680|gb|ABU80444.1| gyrase B [Photorhabdus sp. H3240]
          Length = 333

 Score =  163 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 115/339 (33%), Positives = 173/339 (51%), Gaps = 15/339 (4%)

Query: 167 DELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAAR 226
            +      R   +  Q +  G+P SPL+   +   + GTR+ F P    F +   F    
Sbjct: 3   KKGEQISRRDGKVHEQTYHLGVPQSPLKVVGET-EQTGTRVRFWPSMDTFRNNTEFQHDI 61

Query: 227 LLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSE 286
           L K  +  ++L+  V       +   E       + F++ GG+K +++   +N++ I   
Sbjct: 62  LAKRLRELSFLNSGVSIRLLDKRTNIE-------DHFHYEGGIKAFVEFLNKNKTPIHPN 114

Query: 287 IFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY 345
           +F   TEK G     VE A+ W +     I  + N I   +GGTH  G R A+TR +  Y
Sbjct: 115 VFYFSTEKDGI---GVEAALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSY 171

Query: 346 AEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDP 403
            +      K  +S   DD     V ++SV + +P+F+ QTK KLVS + +  VE  + + 
Sbjct: 172 MDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEK 231

Query: 404 FDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAH 462
              YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLADC +    
Sbjct: 232 LVEYLLENPNDAKTVVSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPA 291

Query: 463 GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV  
Sbjct: 292 LSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVRK 330


>gi|62084066|dbj|BAD91440.1| DNA gyrase subunit B [Streptococcus agalactiae]
 gi|110224948|dbj|BAE97463.1| DNA gyrase subunit B [Streptococcus agalactiae]
          Length = 300

 Score =  163 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 99/302 (32%), Positives = 158/302 (52%), Gaps = 12/302 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS +L V V +   +  Q++ RG+ ++ LE      +  G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVKVYKNGKVHYQEYQRGVVVNDLEIIGDT-DLSG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PDP+IF +   FD  +L K  Q  A+L+  ++   S  +E  E         ++
Sbjct: 60  TTVHFTPDPEIFTETTVFDFDKLAKRIQELAFLNRGLRISISDKREGQEVEKE-----YH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+ +Y++   EN+ +I         E  G    +VE A+ +       + S+ N I 
Sbjct: 115 YEGGIGSYVEFINENKEVIFENPIYTDGELDGI---SVEVAMQYTTGYQETVMSFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G R ALTR I  YA+  +   +   ++  +D+      ++SV    P+F G
Sbjct: 172 THEGGTHEQGFRTALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + +  +       + F+ +L++NP  A K++E  I  S+ R+  ++ REV RK
Sbjct: 232 QTKTKLGNSEVVKITNRLFSEAFNRFLLENPQVAKKIVEKGILASKARIAAKRAREVTRK 291

Query: 442 TA 443
            +
Sbjct: 292 KS 293


>gi|110224960|dbj|BAE97469.1| DNA gyrase subunit B [Streptococcus cristatus]
          Length = 300

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 99/302 (32%), Positives = 160/302 (52%), Gaps = 12/302 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS +L V V +   I  Q++ RG  ++ LE   +  ++ G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEYRRGQVVADLEIIGET-DRTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PDP+IF +   FD  +L K  Q  A+L+  ++   +  ++  E     + ++++
Sbjct: 60  TTVHFTPDPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKRDGME-----QVKDYH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+ +Y+Q   EN+ +I         E       TVE A+ +       + S+ N I 
Sbjct: 115 YEGGIASYVQYINENKDVIFETPIYTDGEMDDI---TVEVAMQYTTGYHETVMSFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G R ALTR I  YA+  +  +    ++  +D+      ++SV    P+F G
Sbjct: 172 THEGGTHEQGFRTALTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + +  +       + F  +L++NP  A K++E  I  S+ R+  ++ REV RK
Sbjct: 232 QTKTKLGNSEVVKITNRLFSEAFSDFLLENPAVARKIVEKGILASKARIAAKRAREVTRK 291

Query: 442 TA 443
            +
Sbjct: 292 KS 293


>gi|320202787|emb|CBZ01766.1| DNA gyrase subunit B [Aeromonas sp. P2G1]
 gi|320202789|emb|CBZ01767.1| DNA gyrase subunit B [Aeromonas sp. P1A11]
          Length = 332

 Score =  163 bits (412), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 119/344 (34%), Positives = 184/344 (53%), Gaps = 16/344 (4%)

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225
           SD+L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   +   
Sbjct: 1   SDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFTDTL-YHYE 58

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
            L K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I  
Sbjct: 59  ILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHP 111

Query: 286 EIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKK 344
           ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  
Sbjct: 112 KVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNS 168

Query: 345 YAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRD 402
           Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +
Sbjct: 169 YMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGE 228

Query: 403 PFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIA 461
               +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +   
Sbjct: 229 KLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDP 288

Query: 462 HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
             +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +
Sbjct: 289 ALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 332


>gi|321401282|gb|ADW83052.1| DNA gyrase subunit B [Legionella pneumophila]
 gi|321401284|gb|ADW83053.1| DNA gyrase subunit B [Legionella pneumophila]
 gi|321401286|gb|ADW83054.1| DNA gyrase subunit B [Legionella pneumophila]
 gi|321401288|gb|ADW83055.1| DNA gyrase subunit B [Legionella pneumophila]
 gi|321401294|gb|ADW83058.1| DNA gyrase subunit B [Legionella pneumophila]
 gi|321401296|gb|ADW83059.1| DNA gyrase subunit B [Legionella pneumophila]
 gi|321401298|gb|ADW83060.1| DNA gyrase subunit B [Legionella pneumophila]
 gi|321401300|gb|ADW83061.1| DNA gyrase subunit B [Legionella pneumophila]
 gi|321401302|gb|ADW83062.1| DNA gyrase subunit B [Legionella pneumophila]
 gi|321401306|gb|ADW83064.1| DNA gyrase subunit B [Legionella pneumophila]
 gi|321401308|gb|ADW83065.1| DNA gyrase subunit B [Legionella pneumophila]
          Length = 208

 Score =  163 bits (412), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 80/220 (36%), Positives = 127/220 (57%), Gaps = 14/220 (6%)

Query: 113 GRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVT 172
           GRGIPV+ H K   KS  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+ELH+ 
Sbjct: 1   GRGIPVDIH-KEEGKSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLL 59

Query: 173 VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQ 232
           V R   ++ Q +  G+P SP+ +  +  N  GT+I F+P  + F +   F    L K  +
Sbjct: 60  VRRHGKVYEQHYRHGVPESPIAETGEA-NSTGTQIWFKPSAETFSN-IEFHYDILAKRLR 117

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             +YL+  V      ++         +K+ F++ GG+K +++   +N++ +   +F+  +
Sbjct: 118 ELSYLNSGVCIHLFDER-------TQKKDTFHYEGGIKAFVEHLNKNKTPVHPVVFSMTS 170

Query: 293 EKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           EK G     +E A+ W +     I  + N I   +GGTH 
Sbjct: 171 EKDGI---VIELAMQWNDGYQETIFCFTNNIPQRDGGTHM 207


>gi|167957272|ref|ZP_02544346.1| DNA gyrase subunit B [candidate division TM7 single-cell isolate
           TM7c]
          Length = 114

 Score =  163 bits (412), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 49/101 (48%), Positives = 64/101 (63%)

Query: 24  KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVID 83
           +           A Q+   +YD S I++LEGLEPVR RPGMYIG T    +HHL  E+ D
Sbjct: 13  RADNSDNSEGDMAKQTNEQSYDGSQIQVLEGLEPVRKRPGMYIGSTGYDGVHHLIKEIAD 72

Query: 84  NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKF 124
           N++DE IAGYA  +EV+L  +G   + D+GRGIPV+ HPK 
Sbjct: 73  NSIDEAIAGYATKVEVTLLEDGGARISDDGRGIPVDKHPKT 113


>gi|313870859|gb|ADR82319.1| DNA gyrase subunit B [Yersinia pseudotuberculosis]
 gi|313870867|gb|ADR82323.1| DNA gyrase subunit B [Yersinia pseudotuberculosis]
          Length = 209

 Score =  163 bits (412), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 116/221 (52%), Gaps = 13/221 (5%)

Query: 116 IPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR 175
           IP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L + + R
Sbjct: 1   IPTGMHDE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRR 59

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL+   +   + GT + F P  + F +   F    L K  +  +
Sbjct: 60  EGKVHEQTYKMGVPQAPLKVVGET-EQTGTTVRFWPSFQTFTNNTEFQYEILAKRLRELS 118

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       +   E       + F++ GG+K +++   +N++ I  ++F   T K 
Sbjct: 119 FLNSGVSIKLKDKRNDKE-------DHFHYDGGIKAFVEYLNKNKNPIHPKVFYFSTMKD 171

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
                 VE A+ W +     I  + N I   +GGTH  G R
Sbjct: 172 DI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFR 209


>gi|327343605|dbj|BAK09547.1| DNA gyrase subunit B [endosymbiont of Nysius sp. 1]
 gi|327343607|dbj|BAK09548.1| DNA gyrase subunit B [endosymbiont of Nysius sp. 1]
 gi|327343609|dbj|BAK09549.1| DNA gyrase subunit B [endosymbiont of Nysius sp. 1]
 gi|327343613|dbj|BAK09551.1| DNA gyrase subunit B [endosymbiont of Nysius sp. 1]
          Length = 321

 Score =  163 bits (412), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 113/332 (34%), Positives = 168/332 (50%), Gaps = 15/332 (4%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD  +Y++SGGLHGVGISVVNALS +L + + RQ  I+ Q ++ G+  + LE   +  
Sbjct: 1   GKFDEISYKVSGGLHGVGISVVNALSQKLELIIKRQGKIYRQLYNTGVSQTTLEIIGET- 59

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
           N+ GT I F P+P IF     F    L+K  +  A+L+  +      ++           
Sbjct: 60  NQTGTYIRFWPNPLIFQKNIEFKYDILVKRIRELAFLNPGLSISIKDNRINI-------H 112

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYC 319
             F   GG+K ++    +N+ LI S IF    EK      +VE A+ W          + 
Sbjct: 113 HSFQEDGGIKAFVAFLSKNKILIHSNIFHFIAEKDKI---SVEIALHWTNTFQNHIYCFT 169

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH SG R A+TR I  Y +      K  ++II DD     V I+S+    P
Sbjct: 170 NNIPQRDGGTHLSGFRSAITRTINTYIDREGYNKKSKVNIIGDDTREGIVAIVSIKAHNP 229

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F+ QTK KLVS + +  VE  + +    YL+++P +A  ++  +I  +  R   RK RE
Sbjct: 230 KFSSQTKDKLVSSEIKSAVETLMNEYLIQYLLEHPQDAKSIVGKIISAARTREAARKVRE 289

Query: 438 VNRKTA-IRKLRLPGKLADCSQNIAHGTELFI 468
           + RK   +    L GKLADC +      EL++
Sbjct: 290 ITRKKGTLDISILSGKLADCQEKNPILNELYL 321


>gi|115381580|gb|ABI96472.1| gyrase B [Salmonella enterica subsp. enterica serovar Albany]
          Length = 323

 Score =  163 bits (412), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 114/330 (34%), Positives = 180/330 (54%), Gaps = 14/330 (4%)

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
               +K GT + F P  + F +   F+   L K  +  ++L+  V       ++  E   
Sbjct: 4   TGDTDKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--- 60

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
               + F++ GG+K +++   +N++ I   IF   TEK G     V+ A+ W +     I
Sbjct: 61  ----DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVKVALQWNDGFQENI 113

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +G R A+TR +  Y +      K  +S   DD   + + ++SV 
Sbjct: 114 YCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREALIAVVSVK 173

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R
Sbjct: 174 VPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAAR 233

Query: 434 KQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           + R    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL
Sbjct: 234 RAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPL 293

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           +GKILNV  A  +K+ ++Q++  L+ ALGC
Sbjct: 294 KGKILNVEKARFDKMLSSQEVATLITALGC 323


>gi|313870861|gb|ADR82320.1| DNA gyrase subunit B [Yersinia pseudotuberculosis]
          Length = 209

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 13/221 (5%)

Query: 116 IPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR 175
           IP   H +    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS++L + + R
Sbjct: 1   IPTGMHDE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRR 59

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL++  +   + GT + F P  + F +   F    L K  +  +
Sbjct: 60  EGKVHEQTYKMGVPQAPLKEVGET-EQTGTTVRFWPSFQTFTNNTEFQYEILAKRLRELS 118

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       +   E       + F++ GG+K +++   +N++ I  ++F   T K 
Sbjct: 119 FLNSGVSIKLKDKRNDKE-------DHFHYEGGIKAFVEYLNKNKNPIHPKVFYFSTMKD 171

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
                 VE A+ W +     I  + N I   +GGTH  G R
Sbjct: 172 DI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFR 209


>gi|110224992|dbj|BAE97485.1| DNA gyrase subunit B [Streptococcus mutans]
          Length = 300

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 103/302 (34%), Positives = 157/302 (51%), Gaps = 12/302 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS +L V V +   I  Q++ RG+    L+      +  G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVRVHKNGKIHYQEYHRGVVAEDLKVIGDT-DITG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PDP+IF +   FD  +L K  Q  A+L+  +K   +  +   E+      EEF+
Sbjct: 60  TIVHFTPDPEIFTETTEFDFDKLAKRIQELAFLNKGLKISITDKRSGQERK-----EEFH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+ +Y++   EN+ +I  +         G    +VE A+ +       I S+ N I 
Sbjct: 115 YEGGIVSYVEFINENKEVIFDKPIYTDGSLDGI---SVEVAMQYTTGFHENIMSFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G R ALTR I  YA+  +   +   ++  DD+      I+SV    P+F G
Sbjct: 172 THEGGTHEQGFRTALTRVINDYAKKNKILKENEDNLNGDDVREGLTAIISVKHPNPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + +  +       D  + +L++NP  A K++E  I  S+ R+  ++ REV RK
Sbjct: 232 QTKTKLGNSEVVKITNRLFSDALNRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRK 291

Query: 442 TA 443
            +
Sbjct: 292 KS 293


>gi|327343611|dbj|BAK09550.1| DNA gyrase subunit B [endosymbiont of Nysius sp. 1]
          Length = 321

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 113/332 (34%), Positives = 168/332 (50%), Gaps = 15/332 (4%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD  +Y++SGGLHGVGISVVNALS +L + + RQ  I+ Q ++ G+  + LE   +  
Sbjct: 1   GKFDEISYKVSGGLHGVGISVVNALSQKLELIIKRQGKIYRQLYNTGVSQTTLEIIGET- 59

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
           N+ GT I F P+P IF     F    L+K  +  A+L+  +      ++           
Sbjct: 60  NQTGTYIRFWPNPLIFQKNIEFKYDILVKRIRELAFLNPGLSISIKDNRINI-------Y 112

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYC 319
             F   GG+K ++    +N+ LI S IF    EK      +VE A+ W          + 
Sbjct: 113 HSFQEDGGIKAFVAFLSKNKILIHSNIFHFIAEKDKI---SVEIALHWTNTFQNHIYCFT 169

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH SG R A+TR I  Y +      K  ++II DD     V I+S+    P
Sbjct: 170 NNIPQRDGGTHLSGFRSAITRTINTYIDREGYNKKSKVNIIGDDTREGIVAIVSIKAHNP 229

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F+ QTK KLVS + +  VE  + +    YL+++P +A  ++  +I  +  R   RK RE
Sbjct: 230 KFSSQTKDKLVSSEIKSAVETLMNEYLIQYLLEHPQDAKSIVGKIISAARTREAARKVRE 289

Query: 438 VNRKTA-IRKLRLPGKLADCSQNIAHGTELFI 468
           + RK   +    L GKLADC +      EL++
Sbjct: 290 ITRKKGTLDISILSGKLADCQEKNPILNELYL 321


>gi|110224978|dbj|BAE97478.1| DNA gyrase subunit B [Streptococcus gordonii]
          Length = 300

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 98/302 (32%), Positives = 161/302 (53%), Gaps = 12/302 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS +L V V +   I  Q+++RG  ++ L+   +  ++ G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVKVYKNGQIHFQEYTRGQVVADLKVIGET-DRTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PDP+IF +   FD  +L K  Q  A+L+  +    +  ++  E     + ++++
Sbjct: 60  TTVHFTPDPEIFTETVEFDFEKLNKRIQELAFLNRGLSISITDKRDGME-----QSKDYH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+ +Y+Q   EN+ +I         E +     TVE A+ +       + S+ N I 
Sbjct: 115 YEGGIASYVQYINENKEVIFDNPIYTDGEMEDI---TVEVAMQYTTGYHETVMSFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G R ALTR I  YA+  +  +    ++  +D+      ++SV    P+F G
Sbjct: 172 THEGGTHEQGFRTALTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + +  +       + F  +L++NP  A K++E  I  S+ R+  ++ REV RK
Sbjct: 232 QTKTKLGNSEVVKITNRLFSEAFSDFLLENPAVAKKIVEKGILASKARIAAKRAREVTRK 291

Query: 442 TA 443
            +
Sbjct: 292 KS 293


>gi|159576564|dbj|BAF92830.1| DNA gyrase subunit B [Halomonas eurihalina]
          Length = 324

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 111/336 (33%), Positives = 175/336 (52%), Gaps = 16/336 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG+SVVNALS+EL +T+ RQ  +  Q +  G  ++PL        + G+R+
Sbjct: 1   YKVCGGLHGVGVSVVNALSEELRLTIWRQGQVHEQLYRHGEAVAPLSVVG-TTEQTGSRV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            FRP P+ F +   F    L K  +  ++L+  V    + ++         ++E F++ G
Sbjct: 60  HFRPSPETFHN-IEFHYDILAKRLRELSFLNSGVAIRLTDER-------TGKEELFHYEG 111

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           GL+ ++     N+++++         + G     VE A+ W +     I  Y N I   +
Sbjct: 112 GLRAFVDHLNTNKTVLNPVFHFNVEREDGV---GVEVAMQWNDTFAENIFCYTNNIPQGD 168

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R +LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK
Sbjct: 169 GGTHLAGFRASLTRTLNHYIEAEGLLKKAKVNTSGDDAREGLTAIISVKVPDPKFSSQTK 228

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTA 443
            KLVS + +  VE  +   F  YLV+ P EA  ++  +++        R+ +    RK A
Sbjct: 229 DKLVSSEVKTAVEQEMGRQFSEYLVERPNEAKAIVNKMLDAARAREAARKARDMTRRKGA 288

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADC +     +EL++VEGDSAGGSAK
Sbjct: 289 LDIAGLPGKLADCQEKDPSLSELYLVEGDSAGGSAK 324


>gi|62084068|dbj|BAD91441.1| DNA gyrase subunit B [Streptococcus agalactiae]
 gi|62084070|dbj|BAD91442.1| DNA gyrase subunit B [Streptococcus agalactiae]
          Length = 300

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 99/302 (32%), Positives = 158/302 (52%), Gaps = 12/302 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS +L V V +   +  Q++ RG+ ++ LE      +  G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVKVYKNGKVHYQEYQRGVVVNDLEIIGDT-DLSG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PDP+IF +   FD  +L K  Q  A+L+  ++   S  +E  E         ++
Sbjct: 60  TTVHFTPDPEIFTETTVFDFDKLAKRIQELAFLNRGLRISISDKREGQEVEKE-----YH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+ +Y++   EN+ +I         E  G    +VE A+ +       + S+ N I 
Sbjct: 115 YEGGIGSYVEFINENKEVIFENPIYTDGELDGI---SVEVAMQYTTGYHETVMSFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G R ALTR I  YA+  +   +   ++  +D+      ++SV    P+F G
Sbjct: 172 THEGGTHEQGFRTALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + +  +       + F+ +L++NP  A K++E  I  S+ R+  ++ REV RK
Sbjct: 232 QTKTKLGNSEVVKITNRLFSEAFNRFLLENPQVAKKIVEKGILASKARIAAKRAREVTRK 291

Query: 442 TA 443
            +
Sbjct: 292 KS 293


>gi|62084088|dbj|BAD91451.1| DNA gyrase subunit B [Streptococcus uberis]
 gi|110225014|dbj|BAE97496.1| DNA gyrase subunit B [Streptococcus uberis]
          Length = 300

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 97/302 (32%), Positives = 155/302 (51%), Gaps = 12/302 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS +L V V +   I  Q+F RG+ +  L       +  G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVRVYKNGNIHFQEFKRGVVVDDLTIIGST-DLTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PDP+IF +   F+  +L K  Q  A+L+  ++   +  ++  E     +  +F+
Sbjct: 60  TTVHFTPDPEIFTETVEFNYDKLAKRIQELAFLNRGLRISIADKRKGIE-----QNHDFH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+ +Y++   E + +I         E  G     VE A+ +     E   S+ N I 
Sbjct: 115 YEGGISSYVEYLNEKKDVIIETPIYTDGEMDGI---AVEVAMQYTTGYHENVMSFANNIN 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G R ALTR I  YA+  +   +   ++  +D+      ++SV    P+F G
Sbjct: 172 THEGGTHEQGFRTALTRVINDYAKKNKILKENDDNLTGEDVREGLTAVISVKHPNPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + +  +       + F  +L++NP  A K+++  I  S+ R+  ++ REV RK
Sbjct: 232 QTKTKLGNSEVVKITNRLFSEAFQRFLLENPQVARKIVDKGILASKARIAAKRAREVTRK 291

Query: 442 TA 443
            +
Sbjct: 292 KS 293


>gi|115381476|gb|ABI96420.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 323

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 113/328 (34%), Positives = 176/328 (53%), Gaps = 14/328 (4%)

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
               +K GT + F P  + F +   F+   L K  +  ++L+  V       +   E   
Sbjct: 4   TGDTDKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRYGKE--- 60

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
               + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I
Sbjct: 61  ----DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENI 113

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV 
Sbjct: 114 YCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVK 173

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R
Sbjct: 174 VPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAAR 233

Query: 434 KQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           + R    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL
Sbjct: 234 RAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPL 293

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQAL 520
           +GKILNV  A  +K+ ++Q++  L+ AL
Sbjct: 294 KGKILNVEKARFDKMLSSQEVATLITAL 321


>gi|190148840|gb|ACE63395.1| DNA gyrase B subunit [Pseudonocardia benzenivorans]
          Length = 346

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 107/352 (30%), Positives = 175/352 (49%), Gaps = 20/352 (5%)

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225
           S  L V +      +SQK++R +P   ++         GT +TF  DP IF     ++  
Sbjct: 1   SSRLDVDIDTDGFHWSQKYTRSVPGPLVK--GAPTRATGTTVTFWADPDIFETTT-YNVE 57

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP----------EKEEFYFPGGLKTYLQT 275
            + +  Q  A+L+  +      ++                   ++  F++P GL+ ++  
Sbjct: 58  TVRRRLQEMAFLNKGLTIVLRDERNGDNGEAEEPDAEGYVAKIKEYTFHYPNGLEDFVAH 117

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             + +  I  ++ +   E  G     +E A+ W       + ++ NTI T EGGTHE G 
Sbjct: 118 LNKTKDPIHKKLVSFSGEAPGH---ALEVAMQWNSGYTESVYTFANTINTHEGGTHEEGF 174

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALT  + +YA   +   ++  ++  DD+      I+SV ++EP+F GQTKTKL + + 
Sbjct: 175 RAALTSTVNRYARDKKLLKEKDPALSGDDIREGLAAIVSVKVKEPQFEGQTKTKLGNTEV 234

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451
           +  V+    +    +  +NP EA  ++   ++ ++ R+   K RE V RK+A     LPG
Sbjct: 235 KSFVQRVSNEWLADWFERNPTEARTIVNKAVQSAQARMAAPKARELVRRKSAGDIGGLPG 294

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           KLADC       +E++IVEGDSAGGSAK  R+   QA+LP+RGKI+NV  A 
Sbjct: 295 KLADCRSTDPSRSEVYIVEGDSAGGSAKSGRDSMFQAILPIRGKIINVEKAR 346


>gi|164456759|dbj|BAF97872.1| gyrase B subunit [Salinivibrio costicola subsp. vallismortis]
          Length = 279

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 85/289 (29%), Positives = 148/289 (51%), Gaps = 13/289 (4%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS++L +T+ R   I    FS G P  PL        + 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKLELTIWRDGHIHQLNFSHGEPQGPLAVIGDT-EQT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GTRI F P  + F D   F+   L K  +  ++L+  V      ++E        + + F
Sbjct: 60  GTRIRFWPSEETFSDIN-FNYDILAKRLRELSFLNSGVSIKLVDERE------EDKADHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ +++     ++ I   +F  +  ++     +VE A+ W +     I  + N I
Sbjct: 113 KYEGGIRAFVEHLNNKKTAIHPSVFHFEHTRED--GVSVEVAMQWNDGYQENIYCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+
Sbjct: 171 PQRDGGTHLAGFRAALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
            QTK KLVS + +  VE+A+ +    +L+++P +A  +   +I+ +  R
Sbjct: 231 SQTKDKLVSSEVKSAVESAMGEHLSDFLIEHPADAKVVCTKIIDAARAR 279


>gi|115381554|gb|ABI96459.1| gyrase B [Salmonella enterica subsp. enterica serovar Zanzibar]
          Length = 323

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 113/328 (34%), Positives = 176/328 (53%), Gaps = 14/328 (4%)

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
               +K GT + F P  + F +   F+   L K  +  ++L+  V       ++  E   
Sbjct: 4   TGDTDKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--- 60

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
               + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I
Sbjct: 61  ----DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENI 113

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV 
Sbjct: 114 YCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVK 173

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++   I+ +  R   R
Sbjct: 174 VPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKFIDAARAREAAR 233

Query: 434 KQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           + R    RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL
Sbjct: 234 RAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPL 293

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQAL 520
           +GKILNV  A  +K+ ++Q++  L+ AL
Sbjct: 294 KGKILNVEKARFDKMLSSQEVATLITAL 321


>gi|324962668|gb|ADY62436.1| gyrase subunit B [Frankia sp. BMG5.14]
          Length = 277

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 87/283 (30%), Positives = 128/283 (45%), Gaps = 23/283 (8%)

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G + V DNGRGIPV  HP      T+E++LTTLHAGGKFD  +Y +SGGLHGVG+
Sbjct: 1   TLLADGGVRVTDNGRGIPVGEHP-VKKIPTVELVLTTLHAGGKFDGESYAVSGGLHGVGV 59

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS  L V +      + Q +    P  PL +    +    T ITF  DP IF   
Sbjct: 60  SVVNALSTRLDVEIQTDGHSWFQPYENSRPARPLAQTGTSKKTG-TTITFWADPTIFET- 117

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA----------------EKYGIPEKEEF 263
             +    L +  Q  A+L+  +      ++  A                 +   P +  F
Sbjct: 118 TTYKYETLFRRLQEMAFLNKGLSITLRDERGKATAPATTTEEPTEAAKPVEAVEPTEVTF 177

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            +  GL  ++      +  +   + + +++  G      E A+ W       + ++ NTI
Sbjct: 178 KYDNGLVDFVGHLNATKDAVHRSVISLESKGTGI---EAELAMQWNSGYNESVYTFANTI 234

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
            T EGGTHE G R ALT  +  YA+     +     S +    
Sbjct: 235 NTHEGGTHEEGFRAALTSAVNAYAKDQNLLKPFKAGSKNSDER 277


>gi|224770925|dbj|BAH28404.1| DNA gyrase subunit B [Clostridium perfringens]
          Length = 245

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 89/254 (35%), Positives = 139/254 (54%), Gaps = 12/254 (4%)

Query: 106 FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNAL 165
            +TVVD+GRG+PV  HPK   K T+E+I+T LHAGGKF    Y++SGGLHGVG SVVNAL
Sbjct: 1   SITVVDDGRGMPVGIHPKM-GKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVNAL 59

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225
           S+   V V R   ++ Q + RG  L+ LEK  +     GT++ F+PD +IF +   +D  
Sbjct: 60  SELCEVIVTRDGYVWKQSYKRGAVLTGLEKVGEAEG-SGTKVHFKPDHEIFEE-TEYDFE 117

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
            L +  +  A+L+  +      ++E   K      E +++ GG+K+++     N+ ++  
Sbjct: 118 ILSQRLRELAFLNKGINITLIDEREDEVKE-----EVYHYEGGIKSFVSYLNRNKEVLHE 172

Query: 286 EIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRGIKK 344
           E    +  K G    +VE ++ + +  N  I ++ N I T EGGTH +G + ALTR +  
Sbjct: 173 EPIYVEGLKDGI---SVEVSLQYHDGFNENIFTFANNIDTVEGGTHLAGFKTALTRVMND 229

Query: 345 YAELTQNKRAISII 358
           Y     + +     
Sbjct: 230 YGRRFGHLKESDKN 243


>gi|321401290|gb|ADW83056.1| DNA gyrase subunit B [Legionella pneumophila]
 gi|321401292|gb|ADW83057.1| DNA gyrase subunit B [Legionella pneumophila]
 gi|321401304|gb|ADW83063.1| DNA gyrase subunit B [Legionella pneumophila]
          Length = 208

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 80/220 (36%), Positives = 127/220 (57%), Gaps = 14/220 (6%)

Query: 113 GRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVT 172
           GRGIPV+ H K   KS  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+ELH+ 
Sbjct: 1   GRGIPVDLH-KEEGKSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLL 59

Query: 173 VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQ 232
           V R   ++ Q +  G+P SP+ +  +  N  GT+I F+P  + F +   F    L K  +
Sbjct: 60  VRRHGKVYEQHYRHGVPESPIAETGEA-NSTGTQIWFKPSAETFSN-IEFHYDILAKRLR 117

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             +YL+  V      ++         +K+ F++ GG+K +++   +N++ +   +F+  +
Sbjct: 118 ELSYLNSGVCIHLFDER-------TQKKDTFHYEGGIKAFVEHLNKNKTPVHPVVFSMTS 170

Query: 293 EKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           EK G     +E A+ W +     I  + N I   +GGTH 
Sbjct: 171 EKDGI---VIELAMQWNDGYQETIFCFTNNIPQRDGGTHM 207


>gi|110225012|dbj|BAE97495.1| DNA gyrase subunit B [Streptococcus thoraltensis]
          Length = 300

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 103/302 (34%), Positives = 158/302 (52%), Gaps = 12/302 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS +L V V +   I+ Q++ RG+ +  L    +  + +G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSKQLDVKVHKNGQIYYQEYRRGVVVDDLAIIGET-DLQG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PDPKIF +   FD A+L K  Q  A+L+  ++   +  +E  E         ++
Sbjct: 60  TTVHFTPDPKIFTETIEFDYAKLAKRVQELAFLNKGLRISITDKREGMETSKE-----YH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+ +Y++   EN+  I         E  G    TVE A+ +       I S+ N I 
Sbjct: 115 YEGGIASYVEYINENKDTIFDTPIFTDGEMDGI---TVEVAMQYTTTYHETIMSFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G R ALTR I  YA       ++  ++  DD+      ++SV    P+F G
Sbjct: 172 THEGGTHEQGFRTALTRVINDYARHNNILKEKDDNLTGDDVREGLTAVISVNHPNPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + +  +       + F+ +L++NP  A K++E  I  S+ R+  ++ REV RK
Sbjct: 232 QTKTKLGNSEVVKITNRLFSEAFNRFLLENPQVARKIVEKGILASKARIAAKRAREVTRK 291

Query: 442 TA 443
            +
Sbjct: 292 KS 293


>gi|322510996|gb|ADX06309.1| DNA gyrase B domain-containing protein [Organic Lake phycodnavirus
           2]
          Length = 483

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 92/512 (17%), Positives = 169/512 (33%), Gaps = 73/512 (14%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTDE---------------------KALHHLFSEVIDN 84
           A+  +     E +   P  YIG  +                        L  LF E I N
Sbjct: 5   ANQYQKKTDKEHILDNPDTYIGSIENVNGPMYVYEDGHIVNKNIDYNPGLFKLFDEGIVN 64

Query: 85  AMDEVIA-----------GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133
             D V+               N+I++ +  +  +T+++NG GI +E HP + +    E+I
Sbjct: 65  CRDHVVRMLQKKEHDDTTQLVNMIDIQI-QDNMITLMNNGNGIDIEKHPTY-DIWIPELI 122

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDE--LHVTVARQNTIFSQKFSRGIPLS 191
              L     ++    +I+GG +G G  +V   S    +      +   ++Q+F   + + 
Sbjct: 123 FGHLRTSTNYNKDEEKITGGKNGFGFKLVLIWSTYGMIETIDYTRKLKYTQEFETNLDVV 182

Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251
                 K   K  T + F+PD K  G          L       +            K++
Sbjct: 183 HKPSITKCSKKPYTLVKFKPDYKRLGLNE-------LSKDMIALFQRRVYDIAGITTKDV 235

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-E 310
             K      +   F   +  Y                               W+ + C  
Sbjct: 236 KVKLNGEALDVKNFNHYVDLYNDC-------------------DKISEQHERWSYSICLS 276

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370
           E  +  S+ N I T +GG H   +   + + +  Y E    K+ + +    +       L
Sbjct: 277 EEFKQVSFVNGIFTSKGGKHVDYIVQQIVKKMIVYIE---KKKKVDVKPSIIKEQLHIFL 333

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           +  I  P F  QTK  L +  ++      + D F   L +  I         I+      
Sbjct: 334 NCTIVNPSFDSQTKDYLNTPPSKFGSSCVVSDKFIEKLAKQGIMENSCELSHIKEKNNSK 393

Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR---SNQ 487
           +    +    +   + +             +    L + EGDSA             +  
Sbjct: 394 KTDGNKNKTIRGIPKLVDANYA----GTKDSKLCTLILCEGDSAKAGILSGLTPSDRNII 449

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
            V P++GK+LNV    ++KI  N++I+++ + 
Sbjct: 450 GVYPMKGKLLNVRGETTKKINENKEIIEIKKL 481


>gi|148762421|dbj|BAF63912.1| DNA gyrase subunit B [Virgibacillus proomii]
          Length = 328

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 109/341 (31%), Positives = 168/341 (49%), Gaps = 22/341 (6%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTR 206
           Y++SGGLHGVG SVVNALS+ L VT+ R   I+ Q+F   G P+  LEKK   +   GT 
Sbjct: 1   YKVSGGLHGVGASVVNALSEWLDVTIHRDGHIYFQRFENGGKPVGSLEKKGPTKK-TGTI 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F+PDP IF     ++   L +  +  A+L   +       +         + EE+ +P
Sbjct: 60  IHFKPDPTIFNTTV-YNFETLSERLREAAFLLKGLTIQLQDLR-------NNQTEEYQYP 111

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
            GLK ++    E +  +   +     ++       V++A  + +     + S+ N + T 
Sbjct: 112 EGLKAFVHYLNEEKDTLHPVVAFEGVQQ----GIEVDFAFQFNDGYAESMLSFVNHVRTK 167

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAG 381
           +GGTHESG R A+TR    YA       ++  ++   D+      I+SV + E   +F G
Sbjct: 168 DGGTHESGARTAITRTFNDYARRIGLLKEKDKNLEGSDIREGFTSIVSVRVPEDKLQFEG 227

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN-- 439
           QTK KL + +A+  V+  + +   ++L +N   +  L++  I+  E R   RK RE    
Sbjct: 228 QTKGKLGTPEARSVVDAVVSEKLSYFLEENSDVSNLLIKKAIKAKEAREAARKAREDART 287

Query: 440 -RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
            RK   +   L GKL           EL++VEGDSAGGSAK
Sbjct: 288 GRKRRKKDTILSGKLTPAQSKNPKRNELYLVEGDSAGGSAK 328


>gi|207678279|gb|ACI25153.1| DNA gyrase B [Phaeobacter sp. M8-3.1]
          Length = 338

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 107/347 (30%), Positives = 173/347 (49%), Gaps = 13/347 (3%)

Query: 170 HVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLK 229
            + + R       +F RG     L+   +  ++ GT + F      F +   +    L K
Sbjct: 1   ELRIWRDGKEHVARFERGDTAEHLKVVGECGDQTGTEVRFLASTDTFSNL-EYSFETLEK 59

Query: 230 MTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFT 289
             +  A+L+  V+     ++          + E ++ GG+K +++    ++S +      
Sbjct: 60  RLRELAFLNSGVRIILIDER-----PAERLEVELFYEGGVKEFVKYLDRSKSPVMEAPIY 114

Query: 290 GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
              +K       VE A+ W +     +  + N I   +GGTH +G R ALTR I  YA+ 
Sbjct: 115 ITGDKDDI---GVEVAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRTINNYAQS 171

Query: 349 TQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
           +    K  +S   DD       +LSV + +P+F+ QTK KLVS + +  VE+ + +    
Sbjct: 172 SGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVNEKLAE 231

Query: 407 YLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTE 465
           +  +NP +A +++  +IE +  R   RK RE   RKTA+    L GKL DCS+     TE
Sbjct: 232 WFEENPNQAKQIVGKIIEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSEKDPSKTE 291

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           +F+VEGDSAGGSA+  R+R  QA+LPLRGKILNV  A  +++  +Q+
Sbjct: 292 VFLVEGDSAGGSAQTGRDRMTQAILPLRGKILNVEPARFDRMLGSQE 338


>gi|110224988|dbj|BAE97483.1| DNA gyrase subunit B [Streptococcus macacae]
          Length = 300

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 97/302 (32%), Positives = 159/302 (52%), Gaps = 12/302 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS +L V V +   ++ Q++ RG+ ++ L+  ++  +  G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVRVYKNGKVYFQEYRRGVVVNDLKVIDET-DITG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PDP IF +   FD  +L K  Q  A+L+  +K   +  ++  E+        ++
Sbjct: 60  TTVHFTPDPDIFTETIEFDFDKLAKRIQELAFLNKGLKISITDKRKDKEQNKE-----YH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+ +Y+    EN+ +I         E +G     VE A+ +       I S+ N I 
Sbjct: 115 YEGGIVSYVDFINENKEVIFENPIYTDGELEGI---AVEVAMQYTTGYHEIIMSFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G R ALTR I  YA+  +   +   ++  +D+      ++SV    P+F G
Sbjct: 172 THEGGTHEQGFRTALTRVINDYAKKNKILKENDDNLSGEDVREGLTAVISVKHPNPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + +  +       +  + +L++NP  A K++E  I  S+ R+  ++ REV RK
Sbjct: 232 QTKTKLGNSEVVKITNRLFSEALNRFLLENPPIAKKIVEKGILASKARIAAKRAREVTRK 291

Query: 442 TA 443
            +
Sbjct: 292 KS 293


>gi|2197133|gb|AAB61300.1| GyrB [Streptomyces ambofaciens]
          Length = 129

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 52/129 (40%), Positives = 77/129 (59%), Gaps = 3/129 (2%)

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
             NQ+I  ++ A G      +  E LRY K+I+M DADVDG HI++LLLTF ++ M  L+
Sbjct: 1   LQNQEIQAMISAFGTGVHEDFDIEKLRYHKIILMADADVDGQHISTLLLTFLFRFMRPLV 60

Query: 568 EQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGK--GKIEISRFKGLGEML 624
           E  H++L  PPL++I  G     YA+ +  +  ++E  +  GK   +  + RFKGLGEM 
Sbjct: 61  EAGHVYLSRPPLYKIKLGRDDFEYAYSDRERDALIELGRNAGKRIREDSVQRFKGLGEMN 120

Query: 625 ASQLKETAM 633
           A +L+ T M
Sbjct: 121 ARKLRVTTM 129


>gi|294668239|ref|ZP_06733346.1| DNA topoisomerase IV, B subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309947|gb|EFE51190.1| DNA topoisomerase IV, B subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 132

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 52/105 (49%), Positives = 67/105 (63%), Gaps = 4/105 (3%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            Y  SSI +L+GLEPV+ RPGMY   T   +  H+  EVIDNA DE + G+A  I+V + 
Sbjct: 5   QYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATEIDVRIH 61

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST 147
            +G L+V DNGRGIPV  HP       +E++ T LHAGGKF+  T
Sbjct: 62  DDGSLSVHDNGRGIPVGLHP-VEGVPVVELVFTRLHAGGKFNKKT 105


>gi|110225016|dbj|BAE97497.1| DNA gyrase subunit B [Streptococcus intermedius]
          Length = 300

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 100/302 (33%), Positives = 160/302 (52%), Gaps = 12/302 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS +L V V +   I  Q++ RG  ++ L+   +  ++ G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVRVYKNGQIHFQEYRRGQVVADLKIIGET-DRTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PDP+IF +   FD  +L K  Q  A+L+  ++   +  +E  E     + ++++
Sbjct: 60  TTVHFTPDPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKREGLE-----QTKDYH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+ +Y+Q   EN+ +I         E       TVE AI +       + S+ N I 
Sbjct: 115 YEGGIASYVQYINENKDVIFENPIYTDGEMDDI---TVEVAIQYTTGYHETVMSFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G R ALTR I  YA+  +  +    ++  +D+      ++SV    P+F G
Sbjct: 172 THEGGTHEQGFRTALTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + +  +       + F  +L++NP  A K++E  I  S+ R+  ++ REV RK
Sbjct: 232 QTKTKLGNSEVVKITNRLFSEAFSDFLLENPAVAKKIIEKGILASKVRIAAKRAREVTRK 291

Query: 442 TA 443
            +
Sbjct: 292 KS 293


>gi|224770917|dbj|BAH28400.1| DNA gyrase subunit B [Clostridium perfringens]
          Length = 245

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 89/254 (35%), Positives = 138/254 (54%), Gaps = 12/254 (4%)

Query: 106 FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNAL 165
            +TVVD+GRG+PV  HPK   K T+E+I+T LHAGGKF    Y++SGGLHGVG SVVNAL
Sbjct: 1   SVTVVDDGRGMPVGIHPKM-GKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVNAL 59

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225
           S+   V V R   ++ Q + RG  L+ LEK  +     GT++ F+PD +IF +   +D  
Sbjct: 60  SELCEVIVTRDGYVWKQSYKRGAVLTGLEKIGEAEG-SGTKVHFKPDHEIFEE-TEYDFE 117

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
            L +  +  A+L+  +      ++E   K      E +++ GG+K+++     N+ ++  
Sbjct: 118 ILSQRLRELAFLNKGINITLIDEREDEVKE-----EVYHYEGGIKSFVSYLNRNKEVLHE 172

Query: 286 EIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRGIKK 344
           E    +  K G     VE ++ + +  N  I ++ N I T EGGTH +G + ALTR +  
Sbjct: 173 EPIYVEGLKDGI---AVEVSLQYHDGFNENIFTFANNIDTVEGGTHLAGFKTALTRVMND 229

Query: 345 YAELTQNKRAISII 358
           Y     + +     
Sbjct: 230 YGRRFGHLKESDKN 243


>gi|330367273|dbj|BAK19431.1| DNA gyrase subunit B [Helicobacter mesocricetorum]
          Length = 349

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 126/362 (34%), Positives = 193/362 (53%), Gaps = 16/362 (4%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS  L +T+ +   I+ Q F +GIP   L+   K +   GT I F PD +IF     F 
Sbjct: 1   ALSKNLQMTIYKNGNIYQQNFQQGIPQDELQIIGKSKE-NGTIIEFIPDNEIFETTN-FQ 58

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L K  +  AYL+ ++   +  ++E  E       E ++F GGL  ++    + ++LI
Sbjct: 59  RDILTKRFKELAYLNKQITIYFKDEREGFE-------EIYHFDGGLNQFVSDLNK-KTLI 110

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIK 343
           SS I     + +   +  + +   + E+   + S+ N I T +GGTHE+G R  LTR I 
Sbjct: 111 SSVINFESLDSEVETQIALAYNDGFEEK---VLSFVNNIKTSDGGTHEAGFRTGLTRAIT 167

Query: 344 KYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            Y E   N  ++   I  DD+    + I+SV + +P+F GQTK KL S   +  V+    
Sbjct: 168 NYIEANANAREKDFKITGDDIREGLIAIVSVKVIDPQFEGQTKGKLGSSFVRPIVQKLTF 227

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNI 460
           +    +  +NP EA  ++E  +  +  R   +K RE   +K       LPGKLADC    
Sbjct: 228 EKLMKFFEENPNEARAIMEKALLAARGREAAKKARELTRKKENFSVGTLPGKLADCQSKD 287

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
              +E+++VEGDSAGGSAKQ R+R +QA+LPL+GKILNV  +  +KI  +++I +L+ AL
Sbjct: 288 PSISEIYLVEGDSAGGSAKQGRDRVSQAILPLKGKILNVEKSRLDKILKSEEIKNLIIAL 347

Query: 521 GC 522
           GC
Sbjct: 348 GC 349


>gi|110224980|dbj|BAE97479.1| DNA gyrase subunit B [Streptococcus hyointestinalis]
          Length = 300

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 101/302 (33%), Positives = 157/302 (51%), Gaps = 12/302 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS +L V V +   I  Q++ RG  ++ L    +  ++ G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVRVYKNGHIHFQEYRRGQVVADLAVIGET-DRTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PD  IF +   +D  +L K  Q  A+L+  ++   +  +E  E     + + F+
Sbjct: 60  TTVHFTPDSAIFTETTTYDFDKLAKRVQELAFLNRGLRISITDKREGKE-----QTKSFH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+ +Y+    EN+ LI  +      E  G    TVE A+ +       I S+ N I 
Sbjct: 115 YEGGIASYVSFINENKELIFKDPIYTDGEMDGI---TVEVAMQYTTSYHETIMSFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G R ALTR I  YA+  +  +    ++  +D+      ++SV    P+F G
Sbjct: 172 THEGGTHEQGFRTALTRVINDYAKKNKLLKENDDNLTGEDVREGLTAVISVKHPNPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + +  +       D F  +L++NP  A K++E  I  S+ R+  ++ REV RK
Sbjct: 232 QTKTKLGNSEVVKITNRLFSDAFSRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRK 291

Query: 442 TA 443
            +
Sbjct: 292 KS 293


>gi|224770891|dbj|BAH28387.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770935|dbj|BAH28409.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770939|dbj|BAH28411.1| DNA gyrase subunit B [Clostridium perfringens NCTC 8239]
 gi|224770945|dbj|BAH28414.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770953|dbj|BAH28418.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770955|dbj|BAH28419.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770957|dbj|BAH28420.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770959|dbj|BAH28421.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770975|dbj|BAH28429.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770977|dbj|BAH28430.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770979|dbj|BAH28431.1| DNA gyrase subunit B [Clostridium perfringens]
          Length = 245

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 89/254 (35%), Positives = 138/254 (54%), Gaps = 12/254 (4%)

Query: 106 FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNAL 165
            +TVVD+GRG+PV  HPK   K T+E+I+T LHAGGKF    Y++SGGLHGVG SVVNAL
Sbjct: 1   SITVVDDGRGMPVGIHPKM-GKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVNAL 59

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225
           S+   V V R   ++ Q + RG  L+ LEK  +     GT++ F+PD +IF +   +D  
Sbjct: 60  SELCEVIVTRDGYVWKQSYKRGAVLTGLEKIGEAEG-SGTKVHFKPDHEIFEE-TEYDFE 117

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
            L +  +  A+L+  +      ++E   K      E +++ GG+K+++     N+ ++  
Sbjct: 118 ILSQRLRELAFLNKGINITLIDEREDEVKE-----EVYHYEGGIKSFVSYLNRNKEVLHD 172

Query: 286 EIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRGIKK 344
           E    +  K G     VE ++ + +  N  I ++ N I T EGGTH +G + ALTR +  
Sbjct: 173 EPIYVEGLKDGI---AVEVSLQYHDGFNENIFTFANNIDTVEGGTHLAGFKTALTRVMND 229

Query: 345 YAELTQNKRAISII 358
           Y     + +     
Sbjct: 230 YGRRFGHLKESDKN 243


>gi|110084484|gb|ABG49399.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|110084502|gb|ABG49408.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|110084504|gb|ABG49409.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|110084512|gb|ABG49413.1| DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 332

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 118/344 (34%), Positives = 184/344 (53%), Gaps = 16/344 (4%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K 
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEILAKR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F  
Sbjct: 59  LRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHF 111

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +  
Sbjct: 112 TTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKE 168

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +
Sbjct: 169 DYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADF 228

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
           L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL
Sbjct: 229 LLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSEL 288

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           +IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 YIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 332


>gi|224770873|dbj|BAH28378.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770875|dbj|BAH28379.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770877|dbj|BAH28380.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770879|dbj|BAH28381.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770881|dbj|BAH28382.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770883|dbj|BAH28383.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770885|dbj|BAH28384.1| DNA gyrase subunit B [Clostridium perfringens CPE str. F4969]
 gi|224770889|dbj|BAH28386.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770895|dbj|BAH28389.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770897|dbj|BAH28390.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770899|dbj|BAH28391.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770901|dbj|BAH28392.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770903|dbj|BAH28393.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770905|dbj|BAH28394.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770907|dbj|BAH28395.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770909|dbj|BAH28396.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770913|dbj|BAH28398.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770915|dbj|BAH28399.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770921|dbj|BAH28402.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770929|dbj|BAH28406.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770933|dbj|BAH28408.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770937|dbj|BAH28410.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770943|dbj|BAH28413.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770947|dbj|BAH28415.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770949|dbj|BAH28416.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770951|dbj|BAH28417.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770969|dbj|BAH28426.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770971|dbj|BAH28427.1| DNA gyrase subunit B [Clostridium perfringens]
          Length = 245

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 89/254 (35%), Positives = 138/254 (54%), Gaps = 12/254 (4%)

Query: 106 FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNAL 165
            +TVVD+GRG+PV  HPK   K T+E+I+T LHAGGKF    Y++SGGLHGVG SVVNAL
Sbjct: 1   SVTVVDDGRGMPVGIHPKM-GKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVNAL 59

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225
           S+   V V R   ++ Q + RG  L+ LEK  +     GT++ F+PD +IF +   +D  
Sbjct: 60  SELCEVIVTRDGYVWKQSYKRGAVLTGLEKIGEAEG-SGTKVHFKPDHEIFEE-TEYDFE 117

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
            L +  +  A+L+  +      ++E   K      E +++ GG+K+++     N+ ++  
Sbjct: 118 ILSQRLRELAFLNKGINITLIDEREDEVKE-----EVYHYEGGIKSFVSYLNRNKEVLHD 172

Query: 286 EIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRGIKK 344
           E    +  K G     VE ++ + +  N  I ++ N I T EGGTH +G + ALTR +  
Sbjct: 173 EPIYVEGLKDGI---AVEVSLQYHDGFNENIFTFANNIDTVEGGTHLAGFKTALTRVMND 229

Query: 345 YAELTQNKRAISII 358
           Y     + +     
Sbjct: 230 YGRRFGHLKESDKN 243


>gi|193788065|dbj|BAG50533.1| DNA gyrase subunit B [bacterium GMW-37]
          Length = 346

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 117/355 (32%), Positives = 180/355 (50%), Gaps = 16/355 (4%)

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
            R   I+ Q +  G+P  P++         GT+I F+   + F +   F    L K  + 
Sbjct: 1   RRSGKIWEQTYVHGVPQEPMKIVGD-SETTGTQIHFKASSETFKNIH-FSWDILAKRIRE 58

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            ++L+  V      ++   E       E F + GGL+ +++    N++ ++         
Sbjct: 59  LSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLNTNKTPVNQVFHFNIQR 111

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350
           + G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y E     
Sbjct: 112 EDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNTYIEAEGLA 168

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            K  ++   DD       I+SV + +P+F+ QTK KLVS + +  VE  +   F  +L++
Sbjct: 169 KKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSDFLLE 228

Query: 411 NPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           NP EA  ++  +I+ +  R   RK R    RK A+    LPGKLADC +     +EL++V
Sbjct: 229 NPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYLV 288

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           EGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC  
Sbjct: 289 EGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGI 343


>gi|308197537|gb|ADO17806.1| GyrB [Vibrio sinaloensis DSM 21326]
          Length = 292

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 91/289 (31%), Positives = 152/289 (52%), Gaps = 13/289 (4%)

Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197
           HAGGKFD+++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +  G P +PL    
Sbjct: 1   HAGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGQIHTQTYHHGEPQAPLAVIG 60

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
           +  +K GT I F P  + F +   F    L K  +  ++L+  V      ++E       
Sbjct: 61  ET-DKTGTEIRFWPSEETFSN-TEFHYDILAKRLRELSFLNSGVSIKLRDERE------E 112

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
            + + F + GG++ +++    N++ I  ++F    E++      VE A+ W +     I 
Sbjct: 113 DKNDHFMYEGGIQAFVEHLNTNKTPIIEKVFHFNAERED--GIAVEVAMQWNDGYQENIY 170

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
            + N I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV +
Sbjct: 171 CFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKV 230

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
            +P+F+ QTK KLVS + +  VE A+ +    +LV++P EA  +   +I
Sbjct: 231 PDPKFSSQTKDKLVSSEVKSAVEQAMGEKLSEFLVEHPAEAKTVCTKII 279


>gi|19571733|emb|CAD19167.1| topoisomerase IV [Stenotrophomonas maltophilia]
          Length = 160

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 75/161 (46%), Positives = 101/161 (62%), Gaps = 1/161 (0%)

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC       TELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN     S  +  
Sbjct: 1   PGKLADCISQDLSRTELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVSSNSVLA 60

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           ++++ +L  A+GC          LRY KV+I+ DAD DG HIA+LL   F +    L++ 
Sbjct: 61  SEEVHNLAVAIGCDPGKDDI-TGLRYGKVVILADADSDGLHIATLLTALFLRHFPALVDA 119

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
            H+F+  PPLFRI  G +  YA DEE K+ +L++ ++    
Sbjct: 120 GHVFVAMPPLFRIDVGKQVFYALDEEEKRSMLDKIEREKIK 160


>gi|210062256|gb|ACJ06177.1| GyrB [Aeromonas media]
          Length = 332

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 118/344 (34%), Positives = 183/344 (53%), Gaps = 16/344 (4%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   +  
Sbjct: 1   LSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFTDTL-YHY 58

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             L K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I 
Sbjct: 59  EILAKRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIH 111

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
            ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR + 
Sbjct: 112 PKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLN 168

Query: 344 KYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ 
Sbjct: 169 SYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMG 228

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNI 460
           +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +  
Sbjct: 229 EKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKD 288

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
              +EL+IVEGDSAGGSAKQ RN  +QA+LPL+GKILNV  A  
Sbjct: 289 PALSELYIVEGDSAGGSAKQGRNPQDQAILPLKGKILNVEKARF 332


>gi|322875030|gb|ADX20838.1| DNA gyrase subunit B [Legionella waltersii]
          Length = 208

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 121/220 (55%), Gaps = 14/220 (6%)

Query: 113 GRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVT 172
           GRGIPV+ H K   KS  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+ELH+ 
Sbjct: 1   GRGIPVDIH-KEEGKSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLL 59

Query: 173 VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQ 232
           + R   +  Q +  G+P +P+ +     N  GT++ F+P    F +   F    L K  +
Sbjct: 60  IRRHGKVHEQHYRHGVPDAPIAETG-TANSTGTQVWFKPSASTFTN-IEFHYDILAKRLR 117

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             +YL+  V      ++          K+ F++ GG+K +++   +N++ +   +F    
Sbjct: 118 ELSYLNSGVCIHLFDERSQ-------RKDTFHYEGGIKAFVEHLNKNKTAVHPNVFAMTA 170

Query: 293 EKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           EK G     +E A+ W +     I  + N I   +GGTH 
Sbjct: 171 EKDGI---VIELALQWNDTYQETIFCFTNNIPQKDGGTHM 207


>gi|324962674|gb|ADY62439.1| gyrase subunit B [Frankia sp. BCU110345]
          Length = 277

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 85/283 (30%), Positives = 127/283 (44%), Gaps = 23/283 (8%)

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G + V DNGRGIPV  HP      T+E++LTTLHAGGKFD  +Y +SGGLHGVG+
Sbjct: 1   TLVADGGVRVTDNGRGIPVGEHP-VKKIPTVELVLTTLHAGGKFDGESYAVSGGLHGVGV 59

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS  L V +      + Q +    P  PL +    +      ITF  DP IF   
Sbjct: 60  SVVNALSTRLDVEIQTDGHSWFQPYENSRPARPLAQTGTSKKTGT-TITFWADPTIFET- 117

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDK----------------EIAEKYGIPEKEEF 263
             +    L +  Q  A+L+  +      ++                    +   P +  F
Sbjct: 118 TTYKYETLFRRLQEMAFLNKGLSITLRDERGKATAPATAAEEPAEAAKPVEAVEPTEITF 177

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            +  GL  ++      +  +   + + +++  G      E A+ W       + ++ NTI
Sbjct: 178 KYDNGLVDFVGHLNATKDAVHRSVISLESKGTGI---EAELAMQWNSGYNESVYTFANTI 234

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
            T EGGTHE G R ALT  +  YA+     + +   S +    
Sbjct: 235 NTHEGGTHEEGFRAALTSAVNAYAKDQNLLKPVKAGSKNSDER 277


>gi|291278196|gb|ADD91579.1| GyrB [uncultured Serratia sp.]
          Length = 311

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 99/322 (30%), Positives = 164/322 (50%), Gaps = 15/322 (4%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS++L + + R+  +  Q ++ G PLSPL+   +  ++ GT + F P
Sbjct: 1   GGLHGVGVSVVNALSEKLELVIRREGKVHEQTYAMGEPLSPLKVVGET-DQTGTTVRFWP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F+   L K  +  ++L+  V       +   E       + F++ GG+K 
Sbjct: 60  SYETFTNNTEFEYDILAKRLRELSFLNSGVSIRLKDKRTDKE-------DHFHYEGGIKA 112

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++   +N++ I   +F   T K       VE A+ W +     I  + N I   +GGTH
Sbjct: 113 FVEYLNKNKTPIHPNVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTH 169

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R A+TR +  Y +      K  IS   DD     + ++SV + +P+F+ QTK KLV
Sbjct: 170 LVGFRTAMTRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLV 229

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  + +    YL++NP +A  ++  +I+        R+ +    RK A+   
Sbjct: 230 SSEVKTAVETLMNEKLVDYLMENPGDAKIVVGKIIDAARAREAARKAREMTRRKGALDLA 289

Query: 448 RLPGKLADCSQNIAHGTELFIV 469
            LPGKLADC +     +EL++V
Sbjct: 290 GLPGKLADCQERDPALSELYLV 311


>gi|148762385|dbj|BAF63894.1| DNA gyrase subunit B [Halobacillus sp. JM-Hb]
 gi|148762455|dbj|BAF63929.1| DNA gyrase subunit B [Virgibacillus sp. M7]
          Length = 329

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 108/339 (31%), Positives = 166/339 (48%), Gaps = 17/339 (5%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG SVVNALS+ L V + R    F Q+F  G       + +    K GT I
Sbjct: 1   YKVSGGLHGVGASVVNALSEWLEVYICRDGEKFYQRFENGGVPVTSLENKGATRKTGTTI 60

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PDP IF     F+   L +  +  A L    +     +++   K      EE+ +  
Sbjct: 61  RFKPDPSIF-SMTKFNFETLSERLREAALLLKGFRIILVDERKETVK------EEYQYDD 113

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEG 327
           GL ++++   E +  + S +    +          ++   + E    I S+ N + T +G
Sbjct: 114 GLVSFVEYLNEEKDTLHSVVSFEGSHSGIEADFAFQFNDGFAE---NILSFVNNVRTKDG 170

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQT 383
           GTHESG + A+TR    YA   Q    +  ++  +D+      ++SV I E   +F GQT
Sbjct: 171 GTHESGAKTAITRVFNDYARRAQLLKDKDKNLEGNDIREGFTAVISVRIPEELLQFEGQT 230

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443
           K+KL + +A+  V+  + +   ++L +NP  A+ L++  I+  E R   RK RE  R   
Sbjct: 231 KSKLGTSEARSAVDGIVAEQLSYFLEENPDVASMLIKKAIKAKEAREAARKAREDARSGK 290

Query: 444 IRK---LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
            +K     L GKL       A   EL++VEGDSAGGSAK
Sbjct: 291 KKKRKDTLLSGKLTPAQSKNAQKNELYLVEGDSAGGSAK 329


>gi|224770887|dbj|BAH28385.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770911|dbj|BAH28397.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770919|dbj|BAH28401.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770923|dbj|BAH28403.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770961|dbj|BAH28422.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770963|dbj|BAH28423.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770965|dbj|BAH28424.1| DNA gyrase subunit B [Clostridium perfringens]
          Length = 245

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 88/254 (34%), Positives = 138/254 (54%), Gaps = 12/254 (4%)

Query: 106 FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNAL 165
            +TVVD+GRG+PV  HPK   K T+E+I+T LHAGGKF    Y++SGGLHGVG SVVNAL
Sbjct: 1   SVTVVDDGRGMPVGIHPKM-GKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVNAL 59

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225
           S+   V V R   ++ Q + RG  L+ LE+  +     GT++ F+PD +IF +   +D  
Sbjct: 60  SELCEVIVTRDGYVWKQSYKRGAVLTGLERIGEAEG-SGTKVHFKPDHEIFEE-TEYDFE 117

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
            L +  +  A+L+  +      ++E   K      E +++ GG+K+++     N+ ++  
Sbjct: 118 ILSQRLRELAFLNKGINITLIDEREDEVKE-----EVYHYEGGIKSFVSYLNRNKEVLHD 172

Query: 286 EIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRGIKK 344
           E    +  K G     VE ++ + +  N  I ++ N I T EGGTH +G + ALTR +  
Sbjct: 173 EPIYVEGLKDGI---AVEVSLQYHDGFNENIFTFANNIDTVEGGTHLAGFKTALTRVMND 229

Query: 345 YAELTQNKRAISII 358
           Y     + +     
Sbjct: 230 YGRRFGHLKESDKN 243


>gi|159576562|dbj|BAF92829.1| DNA gyrase subunit B [Halomonas elongata]
          Length = 324

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 110/336 (32%), Positives = 174/336 (51%), Gaps = 16/336 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG+SVVNALS+EL +T+ RQ  +  Q +  G  ++PL        + G+R+
Sbjct: 1   YKVYGGLHGVGVSVVNALSEELKLTIWRQGQVHEQIYRHGEAVAPLAVVG-TTEQTGSRV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            FRP  + F +   F    L K  +  ++L+  V    + ++         ++E F++ G
Sbjct: 60  HFRPSSETFQN-IEFHYDILAKRLRELSFLNSGVAIRLTDER-------TGKEELFHYEG 111

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           GL+ ++     N+++++         + G     VE A+ W +     I  Y N I   +
Sbjct: 112 GLRAFVDHLNTNKTVLNPVFHFNVEREDGV---GVEVAMQWNDTFAENIFCYTNNIPQGD 168

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R +LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK
Sbjct: 169 GGTHLAGFRASLTRTLNHYIEAEGLLKKAKVNTSGDDAREGLTAIISVKVPDPKFSSQTK 228

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTA 443
            KLVS + +  VE  +   F  YLV+ P EA  ++  +++        R+ +    RK A
Sbjct: 229 DKLVSSEVKTAVEQEMGRQFSEYLVERPNEAKAIVNKMLDAARAREAARKARDMTRRKGA 288

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADC +     +EL++VEGDSAGGSAK
Sbjct: 289 LDIAGLPGKLADCQEKDPSLSELYLVEGDSAGGSAK 324


>gi|224770941|dbj|BAH28412.1| DNA gyrase subunit B [Clostridium perfringens]
          Length = 245

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 89/254 (35%), Positives = 138/254 (54%), Gaps = 12/254 (4%)

Query: 106 FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNAL 165
            +TVVD+GRG+PV  HPK   K T+E+I+T LHAGGKF    Y++SGGLHGVG SVVNAL
Sbjct: 1   SVTVVDDGRGMPVGIHPKM-GKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVNAL 59

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225
           S+   V V R   ++ Q + RG  L+ LEK  +     GT++ F+PD +IF +   +D  
Sbjct: 60  SELCEVIVTRDGYVWKQSYKRGAVLTDLEKIGEAEG-SGTKVHFKPDHEIFEE-TEYDFE 117

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
            L +  +  A+L+  +      ++E   K      E +++ GG+K+++     N+ ++  
Sbjct: 118 ILSQRLRELAFLNKGINITLIDEREDEVKE-----EVYHYEGGIKSFVSYLNRNKEVLHD 172

Query: 286 EIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRGIKK 344
           E    +  K G     VE ++ + +  N  I ++ N I T EGGTH +G + ALTR +  
Sbjct: 173 EPIYVEGLKDGI---AVEVSLQYHDGFNENIFTFANNIDTVEGGTHLAGFKTALTRVMND 229

Query: 345 YAELTQNKRAISII 358
           Y     + +     
Sbjct: 230 YGRRFGHLKESDKN 243


>gi|224770927|dbj|BAH28405.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770967|dbj|BAH28425.1| DNA gyrase subunit B [Clostridium perfringens]
 gi|224770973|dbj|BAH28428.1| DNA gyrase subunit B [Clostridium perfringens]
          Length = 245

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 89/254 (35%), Positives = 138/254 (54%), Gaps = 12/254 (4%)

Query: 106 FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNAL 165
            +TVVD+GRG+PV  HPK   K T+E+I+T LHAGGKF    Y++SGGLHGVG SVVNAL
Sbjct: 1   SVTVVDDGRGMPVGIHPKM-GKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVNAL 59

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225
           S+   V V R   ++ Q + RG  L+ LEK  +     GT++ F+PD +IF +   +D  
Sbjct: 60  SELCEVIVTRGGYVWKQSYKRGAVLTGLEKIGEAEG-SGTKVHFKPDHEIFEE-TEYDFE 117

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
            L +  +  A+L+  +      ++E   K      E +++ GG+K+++     N+ ++  
Sbjct: 118 ILSQRLRELAFLNKGINITLIDEREDEVKE-----EVYHYEGGIKSFVSYLNRNKEVLHD 172

Query: 286 EIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRGIKK 344
           E    +  K G     VE ++ + +  N  I ++ N I T EGGTH +G + ALTR +  
Sbjct: 173 EPIYVEGLKDGI---AVEVSLQYHDGFNENIFTFANNIDTVEGGTHLAGFKTALTRVMND 229

Query: 345 YAELTQNKRAISII 358
           Y     + +     
Sbjct: 230 YGRRFGHLKESDKN 243


>gi|224770931|dbj|BAH28407.1| DNA gyrase subunit B [Clostridium perfringens]
          Length = 245

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 88/254 (34%), Positives = 138/254 (54%), Gaps = 12/254 (4%)

Query: 106 FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNAL 165
            +TV+D+GRG+PV  HPK   K T+E+I+T LHAGGKF    Y++SGGLHGVG SVVNAL
Sbjct: 1   SVTVIDDGRGMPVGIHPKM-GKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVNAL 59

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225
           S+   V V R   ++ Q + RG  L+ LEK  +     GT++ F+PD +IF +   +D  
Sbjct: 60  SELCEVIVTRDGYVWKQSYKRGAVLTGLEKIGEAEG-SGTKVHFKPDHEIFEE-TEYDFE 117

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
            L +  +  A+L+  +      ++E   K      E +++ GG+K+++     N+ ++  
Sbjct: 118 ILSQRLRELAFLNKGINITLIDEREDEVKE-----EVYHYEGGIKSFVSYLNRNKEVLHD 172

Query: 286 EIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRGIKK 344
           E    +  K G     VE ++ + +  N  I ++ N I T EGGTH +G + ALTR +  
Sbjct: 173 EPIYVEGLKDGI---AVEVSLQYHDGFNENIFTFANNIDTVEGGTHLAGFKTALTRVMND 229

Query: 345 YAELTQNKRAISII 358
           Y     + +     
Sbjct: 230 YGRRFGHLKESDKN 243


>gi|193788041|dbj|BAG50521.1| DNA gyrase subunit B [bacterium GM2311]
          Length = 346

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 117/355 (32%), Positives = 180/355 (50%), Gaps = 16/355 (4%)

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
            R   I+ Q +  G+P +P+          GT+I F+   + F +   F    L K  + 
Sbjct: 1   RRSGKIWEQTYVHGVPQAPMAIVGD-SETTGTQIHFKASSETFKNIH-FSWDILAKRIRE 58

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            ++L+  V      ++   E       E F + GGL+ +++    N++ ++         
Sbjct: 59  LSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLNTNKTAVNQVFHFNIQR 111

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350
           + G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y E     
Sbjct: 112 EDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNNYIEQEGLA 168

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            K  ++   DD       I+SV + +P+F+ QTK KLVS + +  VE  +   F  +L++
Sbjct: 169 KKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSDFLLE 228

Query: 411 NPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           NP EA  ++  +I+ +  R   RK R    RK A+    LPGKLADC +     +EL++V
Sbjct: 229 NPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYLV 288

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           EGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC  
Sbjct: 289 EGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGI 343


>gi|322379799|ref|ZP_08054096.1| DNA gyrase subunit B [Helicobacter suis HS5]
 gi|321147767|gb|EFX42370.1| DNA gyrase subunit B [Helicobacter suis HS5]
          Length = 373

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 77/167 (46%), Positives = 105/167 (62%)

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC       +E+++VEGDSAGGSAKQ R+R+ QA+LPLRGKILNV  +   KI  
Sbjct: 5   PGKLADCQSKDPKESEIYLVEGDSAGGSAKQGRDRTYQAILPLRGKILNVEKSHLSKILK 64

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           +++I +++ A GC    ++  E LRY K+IIMTDADVDG+HI +LL+TFFY+ +  LI  
Sbjct: 65  SEEIKNMITAFGCGVGEEFNLEKLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLKPLIAN 124

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616
            H+++  PPL+R  +     Y  DE+     L E          I R
Sbjct: 125 GHVYIAQPPLYRFKKKKIEKYLKDEKELNHFLIEHGIDSAQIEGIGR 171



 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 589 VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648
           +   + +     LE  ++  K    I R+KGLGEM   QL ET M A  R LLRV +  +
Sbjct: 281 LSCLNMDALD-FLESIEERAKQGAYIQRYKGLGEMNPEQLWETTMSAANRNLLRVSLEDE 339

Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
               +   ++ N LMG + + R  +IQ  A  +  + 
Sbjct: 340 ----QSAHEAFNLLMGDEVEPRRDYIQAHARDVKHLD 372


>gi|223674716|gb|ACN13054.1| DNA gyrase subunit B [Pseudomonas marginalis]
          Length = 322

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 107/334 (32%), Positives = 171/334 (51%), Gaps = 16/334 (4%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P +P+        
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGD-SE 59

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             GT+I F+P  + F +   F    L K  +  ++L+  V      ++   E       E
Sbjct: 60  TTGTQIHFKPSAETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------E 111

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F + GGL+ +++    N++ ++         + G     VE A+ W +     +  + N
Sbjct: 112 LFKYEGGLRAFVEYLNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTN 168

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I   +GGTH  G R ALTR +  Y E      K  ++   DD       I+SV + +P+
Sbjct: 169 NIPQRDGGTHLVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPK 228

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQRE 437
           F+ QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+        R+ +  
Sbjct: 229 FSSQTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREM 288

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
             RK+A+    LPGKLADC +     +EL++VEG
Sbjct: 289 TRRKSALDIAGLPGKLADCQEKDPALSELYLVEG 322


>gi|224770893|dbj|BAH28388.1| DNA gyrase subunit B [Clostridium perfringens]
          Length = 245

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 89/254 (35%), Positives = 138/254 (54%), Gaps = 12/254 (4%)

Query: 106 FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNAL 165
            +TVVD+GRG+PV  HPK   K T+E+I+T LHAGGKF    Y++SGGLHGVG SVVNAL
Sbjct: 1   SVTVVDDGRGMPVGIHPKM-GKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVNAL 59

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225
           S+   V V R   ++ Q + RG  L+ LEK  +     GT++ F+PD +IF +   +D  
Sbjct: 60  SELCEVIVTRDGYVWKQSYKRGAVLTGLEKIGEAEG-SGTKVHFKPDHEIFEE-TEYDFE 117

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
            L +  +  A+L+  +      ++E   K      E +++ GG+K+++     N+ ++  
Sbjct: 118 ILSQRLRELAFLNKGINITLIDEREDEVKE-----EVYHYEGGIKSFVSYLNRNKEVLXD 172

Query: 286 EIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRGIKK 344
           E    +  K G     VE ++ + +  N  I ++ N I T EGGTH +G + ALTR +  
Sbjct: 173 EPIYVEGLKDGI---AVEVSLQYHDGFNENIFTFANNIDTVEGGTHLAGFKTALTRVMND 229

Query: 345 YAELTQNKRAISII 358
           Y     + +     
Sbjct: 230 YGRRFGHLKESDKN 243


>gi|66271238|gb|AAY43832.1| DNA gyrase subunit B [Vibrio harveyi]
          Length = 309

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 100/319 (31%), Positives = 166/319 (52%), Gaps = 14/319 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       ++ GT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQ 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F P  + F +   F    L K  +  ++L+  V      ++E        + + F F 
Sbjct: 60  IRFWPSAETFSN-TEFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KSDHFMFE 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG++ +++    N++ I  +IF    E++     +VE A+ W +     I  + N I   
Sbjct: 113 GGIQAFVEHLNTNKTPIIEKIFHFDFERED--GISVEVAMQWNDGFQENIYCFTNNIPQR 170

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QT
Sbjct: 171 DGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQT 230

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR-KT 442
           K KLVS + +  VE+A+ +    +L++NP EA  +   +I+ +      RK RE+ R K 
Sbjct: 231 KDKLVSSEVKSAVESAMGEKLSEFLIENPAEAKMVCSKIIDAARAPEAARKAREMTRPKG 290

Query: 443 AIRKLRLPGKLADCSQNIA 461
           A+    LPGKLADC +   
Sbjct: 291 ALDLAGLPGKLADCQEKDP 309


>gi|110224970|dbj|BAE97474.1| DNA gyrase subunit B [Streptococcus ferus]
          Length = 301

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 95/302 (31%), Positives = 160/302 (52%), Gaps = 11/302 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS +L V V +   ++ Q++ RG  +  L+   +  ++ G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVRVHKNGQVYFQEYRRGQVVDDLKVIGET-DRTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PDP+IF + + FD A+L K  Q  A+L+  ++   +  ++  E         ++
Sbjct: 60  TTVHFTPDPEIFTETSEFDFAKLAKRVQELAFLNKGLRISITDKRDGNEANDKE----YH 115

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+ +Y++   + + +I ++      E +G     VE A+ +     E   S+ N I 
Sbjct: 116 YEGGIVSYVEFLNDTKEVIFNQPIYTDGEMEGI---AVEVAMQYTTGFHENVMSFANNIH 172

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G R ALTR I  YA+  +   +   ++  +D+      ++SV    P+F G
Sbjct: 173 THEGGTHEQGFRTALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEG 232

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + +  +       +    +L++NP  A K++E  I  S+ R+  ++ REV RK
Sbjct: 233 QTKTKLGNSEVVKITNRLFSNALSRFLLENPQTAKKIVEKGILASKARIAAKRAREVTRK 292

Query: 442 TA 443
            +
Sbjct: 293 KS 294


>gi|62461700|gb|AAX83008.1| GyrB [Vibrio campbellii]
          Length = 306

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 91/293 (31%), Positives = 152/293 (51%), Gaps = 13/293 (4%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGGKFD+++Y+ SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL     
Sbjct: 1   AGGKFDDNSYKXSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGD 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
                GT+I F P  + F +   F    L K  +  ++L+  V      ++E        
Sbjct: 61  TEK-TGTQIRFWPSAETFSN-TEFHYDILAKRLRELSFLNSGVSIKLVDEREAD------ 112

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           + + F F GG++ +++    N++ I  +IF    E++     +VE A+ W +     I  
Sbjct: 113 KSDHFMFEGGIQAFVEHLNTNKTPIIEKIFHFDFERED--GISVEVAMQWNDGFQENIYC 170

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV + 
Sbjct: 171 FTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVP 230

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           +P+F+ QTK KLVS + +  VE+A+ +    +L++NP EA  +   +I  +  
Sbjct: 231 DPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIINPTRA 283


>gi|218139455|gb|ACK57885.1| GyrB [Actinobaculum schaalii]
          Length = 375

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 112/376 (29%), Positives = 177/376 (47%), Gaps = 22/376 (5%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS  +   V R   ++   +  G+P   LE+ E+      T  TF  +P I
Sbjct: 1   GVGVSVVNALSTRMETIVKRDGYVWRIAYENGVPTRELERGEETTETG-TTQTFWANPDI 59

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE---------------KYGIPEK 260
           F     +D   L K     A+L+  ++     ++  A                +     +
Sbjct: 60  FETT-DYDFETLRKRFHQMAFLNKNLRINLIDERRSATSEGDEVTGAEGEAAAEVPAKRE 118

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSY 318
             + + GGL  Y++     +            E +    +  VE A+ W       + ++
Sbjct: 119 VSYCYSGGLLDYVKFLNSMKKSDIINNDIIYFEAEDDEKQIEVEVAMQWTSAYSESVNTF 178

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            NTI T EGG HE G R ALT  I KYA        +  ++  DD+      ++SV +  
Sbjct: 179 ANTINTTEGGMHEEGFRSALTSVINKYAREHGLLKDKDPNLSGDDVREGLTAVISVKLGN 238

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F GQTKTKL + +A+  V+  +    + +L  +P +A +++    +    R   RK R
Sbjct: 239 PQFEGQTKTKLGNTEARTFVQQQMYTQLNDWLDSHPADAKEIIRKGTQAFAARAAARKAR 298

Query: 437 EVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E  R+ + +    +PGKL DC+ N     E+FIVEGDSAGGSA   R+  +QA++P+RGK
Sbjct: 299 EATRRKSVLESASMPGKLKDCTSNKPEECEIFIVEGDSAGGSAVNGRDPEHQAIMPIRGK 358

Query: 496 ILNVASAGSEKIRNNQ 511
           ILNV  A  ++  ++ 
Sbjct: 359 ILNVEKARLDRALSSD 374


>gi|284813084|gb|ADB97211.1| DNA gyrase subunit B [Wohlfahrtiimonas chitiniclastica]
          Length = 354

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 119/365 (32%), Positives = 188/365 (51%), Gaps = 16/365 (4%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFD 223
           LS  LH+T+ +   +F Q+++ G P  PL +   V   + GT + F+P  +IF     FD
Sbjct: 1   LSSHLHLTIKQDGKLFEQEYTLGTPQYPLREIGTVDPEETGTTVYFKPSSEIFTITV-FD 59

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L K  +  ++L+  ++     ++   E       + F F GG++ +++     ++ I
Sbjct: 60  YQILKKRLRELSFLNSGIRIHLKDERYDLE-------DIFEFEGGIRAFVEHINRKKTPI 112

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
           +  +F    ++       VE A+ W  +    +  + N I   +GGTH  G R A+TR +
Sbjct: 113 NPSVFYCDNKQDNVI---VEVALQWTTDYQENVYCFTNNIPQKDGGTHLLGFRAAITRTL 169

Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
            +Y E      K  ++   +D       ++SV +  P+F+ QTK KLVS + +  VE+ +
Sbjct: 170 NQYMEQNDLLKKSKVNTSGEDAREGLTAVVSVKLPGPKFSSQTKDKLVSSEVRSAVESVV 229

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQN 459
                 +L +NP +A  +   +IE +  R   R  RE   RK+A+    LPGKL DC + 
Sbjct: 230 SAKIADFLQENPSDAKLITGKIIEAARAREAARNARELTRRKSALDIAGLPGKLTDCQEK 289

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
               +ELFIVEGDSAGGSAKQ RNR  QA+LPL+GKILNV     ++I  + +I  L+ A
Sbjct: 290 DPALSELFIVEGDSAGGSAKQGRNRKFQAILPLKGKILNVERVRFDRILQSAEIGTLITA 349

Query: 520 LGCRT 524
           LGC  
Sbjct: 350 LGCGI 354


>gi|106895901|gb|ABF82649.1| DNA gyrase subunit B [Aeromonas caviae]
 gi|106895903|gb|ABE96843.1| DNA gyrase subunit B [Aeromonas caviae]
          Length = 331

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 118/343 (34%), Positives = 183/343 (53%), Gaps = 16/343 (4%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K 
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEILAKR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F  
Sbjct: 59  LRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHF 111

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +  
Sbjct: 112 TTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNNYMDKE 168

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +
Sbjct: 169 DYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADF 228

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
           L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL
Sbjct: 229 LLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSEL 288

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           +IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ +
Sbjct: 289 YIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMIS 331


>gi|551761|gb|AAA73151.1| gyrB [Buchnera aphidicola]
          Length = 91

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 41/90 (45%), Positives = 61/90 (67%), Gaps = 2/90 (2%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           D YD+S I+IL GL+ VR RPGMYIG TD+   LHH+  E++DN++DE +AG+   I+V 
Sbjct: 3   DTYDSSKIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVFEIVDNSIDEALAGFCKEIKVV 62

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTL 130
           +  +  +++ D+GRGIP + HP+    S  
Sbjct: 63  IHSDNSVSIKDDGRGIPTDIHPE-EKISAA 91


>gi|324962672|gb|ADY62438.1| gyrase subunit B [Frankia sp. BCU110501]
          Length = 277

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 85/283 (30%), Positives = 126/283 (44%), Gaps = 23/283 (8%)

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G + V DNGRGIPV  HP      T+E++LTTLHAGGKFD  +Y +SGGLHGVG+
Sbjct: 1   TLVADGGVRVTDNGRGIPVGEHP-VKKIPTVELVLTTLHAGGKFDGESYAVSGGLHGVGV 59

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS  L V +      + Q +    P  PL +    +      ITF  DP IF   
Sbjct: 60  SVVNALSTRLDVEIQSDGHSWFQPYENSRPARPLAQTGTSKKTGT-TITFWADPTIFET- 117

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDK----------------EIAEKYGIPEKEEF 263
             +    L +  Q  A+L+  +      ++                    +   P +  F
Sbjct: 118 TTYKYETLFRRLQEMAFLNKGLSITLRDERGKAPAPATAAEEPAEAAKPVEAVEPTEITF 177

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            +  GL  ++      +  +   + + +++  G      E A+ W       + ++ NTI
Sbjct: 178 KYDNGLVDFVGHLNATKDAVHRSVISLESKGTGI---EAELAMQWNSGYNESVYTFANTI 234

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
            T EGGTHE G R ALT  +  YA+     +     S +    
Sbjct: 235 NTHEGGTHEEGFRAALTSAVNAYAKDQNLLKPFKAGSKNSDER 277


>gi|261884018|ref|ZP_06008057.1| DNA gyrase subunit B [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 88

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 43/77 (55%), Positives = 58/77 (75%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           S +YDA  I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY N I+V+
Sbjct: 8   SPHYDAEQIQVLEGLEAVRKRPGMYIGSTSSKGLHHLVWEIVDNSIDEALAGYCNHIQVT 67

Query: 101 LDGNGFLTVVDNGRGIP 117
           ++ + ++ V DNGRG P
Sbjct: 68  IEKDNWIRVEDNGRGNP 84


>gi|110084498|gb|ABG49406.1| DNA gyrase subunit beta [Aeromonas media]
 gi|110084500|gb|ABG49407.1| DNA gyrase subunit beta [Aeromonas media]
 gi|110084506|gb|ABG49410.1| DNA gyrase subunit beta [Aeromonas media]
          Length = 332

 Score =  161 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 117/344 (34%), Positives = 184/344 (53%), Gaps = 16/344 (4%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   +    L K 
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFTDTL-YHYEILAKR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F  
Sbjct: 59  LRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHF 111

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +  
Sbjct: 112 TTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKE 168

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +
Sbjct: 169 DYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADF 228

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
           L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL
Sbjct: 229 LLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSEL 288

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           +IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 YIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 332


>gi|269970288|gb|ACZ55129.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. akhurstii]
          Length = 308

 Score =  161 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 97/316 (30%), Positives = 156/316 (49%), Gaps = 15/316 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS++L + + R   +  Q +  G P SPL+   +   + GTR+ F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYHLGEPQSPLKVVGET-EQTGTRVRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P    F +   F    L K  +  ++L+  V       +   E       + F++ GG+
Sbjct: 60  WPSMDTFRNNTEFQHDILAKRLRELSFLNSGVSIRLIDKRTNTE-------DHFHYEGGI 112

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K +++   +N++ I   +F   TEK G     VE ++ W +     I  + N I   +GG
Sbjct: 113 KAFVEFLNKNKTPIHPNVFYFSTEKDGI---GVEISMQWNDGFQENIYCFTNNIPQRDGG 169

Query: 329 THESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH  G R A+TR +  Y +      K  +S   DD       ++SV + +P+F+ QTK K
Sbjct: 170 THLVGFRTAMTRTLNSYMDKEGYNKKSKVSATGDDAREGLGAVISVKVPDPKFSSQTKDK 229

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIR 445
           LVS + +  VE  + +    YL++NP +A  ++  +I+        R+ +    RK A+ 
Sbjct: 230 LVSSEVKTAVETLMNEKLVEYLLENPNDAKTVVSKIIDPARAREAARKAREMTRRKGALD 289

Query: 446 KLRLPGKLADCSQNIA 461
              LPGKLADC +   
Sbjct: 290 LAGLPGKLADCQERDP 305


>gi|110084482|gb|ABG49398.1| DNA gyrase subunit beta [Aeromonas veronii]
 gi|110084510|gb|ABG49412.1| DNA gyrase subunit beta [Aeromonas veronii]
          Length = 332

 Score =  161 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 118/344 (34%), Positives = 184/344 (53%), Gaps = 16/344 (4%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K 
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPAIFSDTL-FHYEILAKR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F  
Sbjct: 59  LRELSFLNSGVSIRLQDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHF 111

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +  
Sbjct: 112 TTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKE 168

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +
Sbjct: 169 DYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADF 228

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
           L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL
Sbjct: 229 LLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSEL 288

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           +IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 YIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 332


>gi|322875028|gb|ADX20837.1| DNA gyrase subunit B [Tatlockia micdadei]
          Length = 208

 Score =  161 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 75/219 (34%), Positives = 123/219 (56%), Gaps = 14/219 (6%)

Query: 113 GRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVT 172
           GRGIPV+ H K   +S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+ELH+T
Sbjct: 1   GRGIPVDIH-KEEGRSAAEVIMTILHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLT 59

Query: 173 VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQ 232
           + R   +  Q +  G+P +PL    +  N  GT++ F+P    F +   F    L K  +
Sbjct: 60  IRRNGKVHEQHYRNGVPDAPLAMTGEA-NTTGTQVWFKPSANTFSN-IEFHYDILAKRLR 117

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             ++L+  V+     ++         +++ F + GG+K +++    N++ I   +F+   
Sbjct: 118 ELSFLNSGVRIHLYDER-------TQKQDTFCYEGGIKAFVEHLNRNKTPIMPVVFSLSG 170

Query: 293 EKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           E+      +VE ++ W +     I  + N I   +GGTH
Sbjct: 171 ERDNI---SVELSMQWNDSFQETIFCFTNNIPQRDGGTH 206


>gi|19571731|emb|CAD19166.1| topoisomerase IV [Stenotrophomonas maltophilia]
          Length = 160

 Score =  161 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 75/161 (46%), Positives = 101/161 (62%), Gaps = 1/161 (0%)

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC       TELF+VEGDSAGGSAKQAR++  QA++PLRGKILN     S  +  
Sbjct: 1   PGKLADCISQDLSRTELFLVEGDSAGGSAKQARDKDFQAIMPLRGKILNTWEVSSNSVLA 60

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           ++++ +L  A+GC          LRY KVII+ DAD DG HIA+LL   F +    L++ 
Sbjct: 61  SEEVHNLAIAIGCDPGKDDI-SGLRYGKVIILADADSDGLHIATLLTALFLKHFPALVDA 119

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
            H+F+  PPLFRI  G +  YA DEE K+ +L++ ++    
Sbjct: 120 GHVFVAMPPLFRIDVGKQVFYALDEEEKRTMLDKIEREKIK 160


>gi|159576549|dbj|BAF92823.1| DNA gyrase subunit B [Virgibacillus halophilus]
          Length = 328

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 104/340 (30%), Positives = 171/340 (50%), Gaps = 20/340 (5%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG SVVNALS+ + +T  R+   + Q+F +G   +     +    K GT +
Sbjct: 1   YKVSGGLHGVGASVVNALSEWMEITSFREGQKYFQRFEKGGKPAGPPVNQGTSRKTGTMV 60

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PDP IF     FD   + +  +  A+L   ++      +          + EF +P 
Sbjct: 61  HFKPDPAIFST-TTFDEEIIAERLREAAFLLKGLRITLHDMRSED-------RMEFCYPE 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           GLK ++    E++  +  ++   + E +   +  V++A  + +     + S+ N + T +
Sbjct: 113 GLKAFVDYLNEDKETLH-DVVFFEGEHE---QIEVDFAFQFNDGFAESMLSFVNHVRTKD 168

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQ 382
           GGTHESG R A TR    YA       ++  ++   D+      I+SV I E   +F GQ
Sbjct: 169 GGTHESGARSATTRVFNDYARKNGLIKEKEKNLEGTDIREGLTAIVSVRIPEEKLQFEGQ 228

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK KL + +A+  V++ + +   ++L +NP  AT L++  ++  E R   RK R+ +R  
Sbjct: 229 TKAKLGTSEARSAVDSIVSEKLTYFLEENPDVATSLVKKALKAKEAREAARKARDESRNG 288

Query: 443 AIRK---LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
             ++     L GKL           EL++VEGDSAGGSAK
Sbjct: 289 KKKRRKDTLLSGKLTPAQSRNPKRNELYLVEGDSAGGSAK 328


>gi|164456767|dbj|BAF97876.1| gyrase B subunit [Vibrio algosus]
          Length = 282

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 90/292 (30%), Positives = 151/292 (51%), Gaps = 13/292 (4%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD+++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +S G P +PL       +K
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGDT-DK 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT I F P  + F +   F    L K  +  ++L+  V      ++E        + + 
Sbjct: 60  TGTEIRFWPSEETFTN-IEFHYDILAKRLRELSFLNSGVSIKLIDERE------EDKMDH 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           F + GG++ +++    N++ I  +IF   +E++     TVE A+ W +     I  + N 
Sbjct: 113 FEYEGGIQAFVEHLNTNKTPIIQKIFHFNSERED--GITVEVAMQWNDGYQENIYCFTNN 170

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GG H +G R ALTR +  + +      K   S   DD       I+SV + +P+F
Sbjct: 171 IPQRDGGAHLAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKF 230

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           + QTK KLVS + +  VE+ + +    +L++NP EA  +   +I+ +  R  
Sbjct: 231 SSQTKDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDA 282


>gi|19571735|emb|CAD19168.1| topoisomerase IV [Stenotrophomonas maltophilia]
          Length = 160

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 76/161 (47%), Positives = 101/161 (62%), Gaps = 1/161 (0%)

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC       TELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN     S  +  
Sbjct: 1   PGKLADCISQDLSRTELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVSSNSVLA 60

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           ++++ +L  A+GC          LRY KVII+ DAD DG HIA+LL   F +    L++ 
Sbjct: 61  SEEVHNLAVAIGCDPGKDDI-TGLRYGKVIILADADSDGLHIATLLTALFLKHFPALVDA 119

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
            H+F+  PPLFRI  G +  YA DEE K+ +L++ ++    
Sbjct: 120 GHVFVAMPPLFRIDVGKQVFYALDEEEKRSMLDKIEREKIK 160


>gi|254673485|emb|CBA08887.1| DNA gyrase subunit B [Neisseria meningitidis alpha275]
          Length = 106

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 43/87 (49%), Positives = 59/87 (67%), Gaps = 2/87 (2%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95
            +   + Y A SI++LEGLE VR RPGMYIG T D   LHH+  EV+DNA+DE +AG+ +
Sbjct: 2   TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61

Query: 96  LIEVSLDGNGFLTVVDNGRGIPVENHP 122
            I V++  +  ++V DNGRG+P   HP
Sbjct: 62  KITVTIHADHSVSVADNGRGMPTG-HP 87


>gi|198042670|gb|ACH81160.1| GyrB [Alteromonas sp. UST950701-001]
          Length = 317

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 108/321 (33%), Positives = 171/321 (53%), Gaps = 14/321 (4%)

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
               +K GT I F P    F D   +    L K  +  ++L+  V      +++  E   
Sbjct: 6   TGDTDKTGTMIRFWPSSDTFTDTL-YHYDILAKRLRELSFLNSGVSIRLKDERDGKE--- 61

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
               + F + GG+K +++   E ++ +  ++F   +E++      VE A+ W +     +
Sbjct: 62  ----DHFMYEGGIKAFVEYLNEKKTPVHQKVFHFSSEQED--GIAVEVAMQWNDSFQENV 115

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +G R A TR +  Y E      K   +   DD       ++SV 
Sbjct: 116 FCFTNNIPQRDGGTHLAGFRGAFTRTLNNYMEKEGLNKKAKTNASGDDAREGLTAVISVK 175

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + +P+F+ QTK KLVS + +  VE+A+ +    +L++NP E+  +   +I+ +  R   R
Sbjct: 176 VPDPKFSSQTKDKLVSSEVRPAVESAMNEKLAEFLLENPAESKIIAGKIIDAARARESAR 235

Query: 434 KQREVN-RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           K RE+  RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL
Sbjct: 236 KAREMTLRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 295

Query: 493 RGKILNVASAGSEKIRNNQQI 513
           +GKILNV  A  +K+ ++Q++
Sbjct: 296 KGKILNVEKARFDKMLSSQEV 316


>gi|324962666|gb|ADY62435.1| gyrase subunit B [Frankia sp. NRRLB-16219]
          Length = 283

 Score =  160 bits (405), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 87/289 (30%), Positives = 129/289 (44%), Gaps = 29/289 (10%)

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G + V DNGRGIPV  HP      T+E++LTTLHAGGKFD  +Y +SGGLHGVG+
Sbjct: 1   TLLADGGVRVTDNGRGIPVGEHP-VKKIPTVELVLTTLHAGGKFDGESYAVSGGLHGVGV 59

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS  L V +      + Q +    P  PL +    +    T ITF  DP IF   
Sbjct: 60  SVVNALSTRLDVEIQTDGHSWFQPYENSRPARPLAQTGTSKKTG-TTITFWADPTIFET- 117

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA----------------------EKYGI 257
             +    L +  Q  A+L+  +      ++  A                       +   
Sbjct: 118 TTYKYETLFRRLQEMAFLNKGLSITLRDERGKATAPATNTVTVTVTEEPTEAAKPVEAVE 177

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
           P +  F +  GL  ++      +  +   + + +++  G      E A+ W       + 
Sbjct: 178 PTEVTFKYDNGLVDFVGHLNATKDAVHRSVISLESKGTGI---EAELAMQWNSGYNESVY 234

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
           ++ NTI T EGGTHE G R ALT  +  YA+     + +   S +    
Sbjct: 235 TFANTINTHEGGTHEEGFRAALTSAVNAYAKDQNLLKPVKAGSKNSDER 283


>gi|19571739|emb|CAD19170.1| topoisomerase IV [Stenotrophomonas maltophilia]
          Length = 160

 Score =  160 bits (405), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 75/161 (46%), Positives = 101/161 (62%), Gaps = 1/161 (0%)

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC       TELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN     S  +  
Sbjct: 1   PGKLADCISQDLSRTELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVSSNSVLA 60

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           ++++ +L  A+GC          LRY KV+I+ DAD DG HIA+LL   F +    L++ 
Sbjct: 61  SEEVHNLAVAIGCDPGKDDI-TGLRYGKVVILADADSDGLHIATLLTALFLKHFPALVDA 119

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
            H+F+  PPLFRI  G +  YA DEE K+ +L++ ++    
Sbjct: 120 GHVFVAMPPLFRIDVGKQVFYALDEEEKRSMLDKIEREKIK 160


>gi|19571741|emb|CAD19171.1| topoisomerase IV [Stenotrophomonas maltophilia]
          Length = 160

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 76/161 (47%), Positives = 101/161 (62%), Gaps = 1/161 (0%)

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC       TELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN     S  +  
Sbjct: 1   PGKLADCISQSLSRTELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVSSNSVLA 60

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           ++++ +L  A+GC          LRY KVII+ DAD DG HIA+LL   F +    L++ 
Sbjct: 61  SEEVHNLAVAIGCDPGKDDI-TGLRYGKVIILADADSDGLHIATLLTALFLKHFPALVDA 119

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
            H+F+  PPLFRI  G +  YA DEE K+ +L++ ++    
Sbjct: 120 GHVFVAMPPLFRIDVGKQVFYALDEEEKRSMLDKIEREKIK 160


>gi|322875024|gb|ADX20835.1| DNA gyrase subunit B [Fluoribacter gormanii]
          Length = 208

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 78/220 (35%), Positives = 123/220 (55%), Gaps = 14/220 (6%)

Query: 113 GRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVT 172
           GRGIPV+ H K   +S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+ELH+T
Sbjct: 1   GRGIPVDIH-KEEGRSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLT 59

Query: 173 VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQ 232
           V R   I  Q +  G+P +P+ +        GT+I F+P  + F +   F    L K  +
Sbjct: 60  VRRHGKIHEQHYRNGVPEAPMAETGDAT-TTGTQIWFKPSAETFSN-IEFHYDILAKRLR 117

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             +YL+  V      ++          ++ F++ GG+K +++   +N+++I   +F+   
Sbjct: 118 ELSYLNSGVCIHLFDERSQ-------RQDTFHYEGGIKAFVEHLNKNKTVIIPTVFSMSA 170

Query: 293 EKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHE 331
           EK       VE ++ W +   E    + N I   +GGTH 
Sbjct: 171 EKDNI---VVELSMQWNDSYQETLYCFTNNIPQRDGGTHM 207


>gi|19571737|emb|CAD19169.1| topoisomerase IV [Stenotrophomonas maltophilia]
          Length = 160

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 76/161 (47%), Positives = 101/161 (62%), Gaps = 1/161 (0%)

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC       TELF+VEGDSAGGSAKQAR++  QA+LPLRGKILN     S  +  
Sbjct: 1   PGKLADCISQDLSRTELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVSSNSVLA 60

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           ++++ +L  A+GC          LRY KVII+ DAD DG HIA+LL   F +    L++ 
Sbjct: 61  SEEVHNLAVAIGCDPGKDDI-AGLRYGKVIILADADSDGLHIATLLTALFLKHFPALVDA 119

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
            H+F+  PPLFRI  G +  YA DEE K+ +L++ ++    
Sbjct: 120 GHVFVAMPPLFRIDVGKQVFYALDEEEKRSMLDKIEREKIK 160


>gi|324962662|gb|ADY62433.1| gyrase subunit B [Frankia sp. BMG5.11]
          Length = 277

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 85/283 (30%), Positives = 127/283 (44%), Gaps = 23/283 (8%)

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G + V DNGRGIPV  HP      T+E++LTTLHAGGKFD  +Y +SGGLHGVG+
Sbjct: 1   TLVADGGVRVTDNGRGIPVGEHP-VKKIPTVELVLTTLHAGGKFDGESYAVSGGLHGVGV 59

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS  L V +      + Q +    P  PL +    +    T ITF  DP IF   
Sbjct: 60  SVVNALSTRLDVEIQSDGHSWFQPYENSRPARPLAQTGTSKKTG-TTITFWADPTIFET- 117

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE----------------KYGIPEKEEF 263
             +    L +  Q  A+L+  +      ++  A                 +   P +  F
Sbjct: 118 TTYKYETLFRRLQEMAFLNKGLSITLRDERGKATAPATTTEEPTEAAKPAEAVEPTEVTF 177

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            +  GL  ++      +  +   + + +++  G      E A+ W       + ++ NTI
Sbjct: 178 KYDNGLVDFVGHLNATKDAVHRSVISLESKGIGI---EAELAMQWNSGYNESVYTFANTI 234

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
            T EGGTHE G R AL   +  Y +     + +   S +    
Sbjct: 235 NTHEGGTHEEGFRAALISAVNDYRKDQNLLKPVKAGSKNSDER 277


>gi|29652703|gb|AAO87321.1| DNA gyrase B [Listeria monocytogenes]
          Length = 135

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 68/135 (50%), Positives = 92/135 (68%)

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS      +EL+IVEGDSAGGSAKQ R+R  QA+LP+RGKILNV  A  ++I  N++
Sbjct: 1   LADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEE 60

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  +  A+G      +     RY K+IIMTDADVDGAHI +LLLT FY+ M  L++  ++
Sbjct: 61  IRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGYI 120

Query: 573 FLISPPLFRITQGTK 587
           ++  PPL++I  G +
Sbjct: 121 YIAQPPLYQIKHGKQ 135


>gi|210062246|gb|ACJ06172.1| GyrB [Aeromonas salmonicida]
          Length = 325

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 116/336 (34%), Positives = 181/336 (53%), Gaps = 15/336 (4%)

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225
           SD+L +T+ R   ++ Q +  G P +PL++     +  GT + F P P IF D   +   
Sbjct: 1   SDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTL-YHYE 59

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
            L K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I  
Sbjct: 60  ILAKRLRELSFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVEYLNQNKTPIHP 112

Query: 286 EIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKK 344
           ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  
Sbjct: 113 KVFHFSTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNT 169

Query: 345 YAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRD 402
           Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +
Sbjct: 170 YMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGE 229

Query: 403 PFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIA 461
               +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +   
Sbjct: 230 KLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDP 289

Query: 462 HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
             +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKIL
Sbjct: 290 ALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKIL 325


>gi|159576574|dbj|BAF92835.1| DNA gyrase subunit B [Halomonas variabilis]
          Length = 324

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 114/336 (33%), Positives = 170/336 (50%), Gaps = 16/336 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG+SVVNALS+EL +T+ RQ  +  Q +  G+P +PL          GT +
Sbjct: 1   YKVFGGLHGVGVSVVNALSEELKLTIWRQGKVHEQIYRHGVPEAPLAVVGNTEK-SGTLV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+P P  FG+   F    L K  +  ++L+  V      ++   E       E F++ G
Sbjct: 60  RFKPSPLTFGN-IAFHYEILAKRLRELSFLNSGVAIRLIDERSGKE-------ELFHYEG 111

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           GLK ++     N++ ++         + G     VE A+ W +     I  Y N I   +
Sbjct: 112 GLKAFVDHLNTNKAALNPVFHFEMEREDGI---GVEVAMQWNDAFSENIFCYTNNIPQRD 168

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R ALTR +  Y E      K  +    DD       I+SV + +P+F+ QTK
Sbjct: 169 GGTHLAGFRAALTRTLNSYIEAEGLLKKSKVGTTGDDAREGLTAIISVKVPDPKFSSQTK 228

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTA 443
            KLVS + +  VE  +   F  YL++ P EA  ++  +++        R+ +    RK A
Sbjct: 229 DKLVSSEVKTAVEQEMGRLFSEYLIEKPNEAKAIVNKMLDAARAREAARKARDMTRRKGA 288

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADC +     +EL++VEGDSAGGSAK
Sbjct: 289 LDIAGLPGKLADCQEKDPSLSELYLVEGDSAGGSAK 324


>gi|58415298|emb|CAH04907.1| DNA gyrase subunit B [Agromyces fucosus]
          Length = 349

 Score =  160 bits (404), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 114/351 (32%), Positives = 169/351 (48%), Gaps = 21/351 (5%)

Query: 173 VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQ 232
           V RQ  ++ Q ++ G+P +PL K E   ++ GT  TF P P IF     FD   L    Q
Sbjct: 1   VRRQGHVWRQSYTVGVPDAPLSKDEP-NDETGTTTTFWPSPDIFETV-EFDYETLRARFQ 58

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIP--------------EKEEFYFPGGLKTYLQTKLE 278
             A+L+  ++   + ++    +                    + F +  GL  Y++    
Sbjct: 59  QMAFLNKGLRITLTDERVGHVEIDPDDTAANEADAATPGQRTDTFLYERGLVDYVEYLNR 118

Query: 279 NRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           ++            E +    +  +E A+ W       + +Y NTI T EGGTHE G R 
Sbjct: 119 SKKSDVVNDEIISFETEDTERKIALEVAMQWTTSYTESVHTYANTINTHEGGTHEEGFRS 178

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALT  + KYA       ++  ++  DD+      ++SV + EP+F GQTKTKL + + + 
Sbjct: 179 ALTTLVNKYAREKGIIKEKDENLSGDDVREGLTAVISVKLSEPQFEGQTKTKLGNTEVKS 238

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKL 453
            V+    D    +  +NP +A  ++   I+ +  RL  RK RE  R+  +     +PGKL
Sbjct: 239 FVQKVTSDQLGDWFERNPTQARDIIRKAIQAATARLAARKAREATRRKGLLESGGMPGKL 298

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504
            DCS      +E+FIVEGDSAGGSA Q RN   QA+LPLRGKILNV  A  
Sbjct: 299 KDCSSKDPSVSEIFIVEGDSAGGSAVQGRNPETQAILPLRGKILNVEKARL 349


>gi|210062240|gb|ACJ06169.1| GyrB [Aeromonas allosaccharophila]
          Length = 341

 Score =  160 bits (404), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 120/351 (34%), Positives = 185/351 (52%), Gaps = 16/351 (4%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   +  
Sbjct: 1   LSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFTDTL-YHY 58

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             L K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I 
Sbjct: 59  EILAKRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIH 111

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
            ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR + 
Sbjct: 112 PKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLN 168

Query: 344 KYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ 
Sbjct: 169 SYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMG 228

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNI 460
           +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +  
Sbjct: 229 EKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKD 288

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
              +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV    S      +
Sbjct: 289 PALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVERPVSTDDLLAE 339


>gi|37956527|gb|AAP15349.1| gyrase B [Geobacter thiogenes]
          Length = 309

 Score =  160 bits (404), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 95/284 (33%), Positives = 152/284 (53%), Gaps = 14/284 (4%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FDN +Y++SGGLHGVG+SVVNALS  L + + R   I+ Q + RG P +PLE     R  
Sbjct: 2   FDNHSYKVSGGLHGVGVSVVNALSKWLDLEIRRDGKIWRQTYHRGEPQAPLEVTGNTRR- 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
           RGT++TF PD +IF     +    L +  +  A+L+  V+   + ++         +  +
Sbjct: 61  RGTKVTFMPDEEIFET-TEYSFDILSQRLRELAFLNAGVRIKINDER------ADGKSHD 113

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           F++ GG+ ++++     ++ +  +    K EK G     +E ++ + +    +I S+ N 
Sbjct: 114 FFYEGGINSFVEYLNRAKTALHQKPIYFKGEKGGV---EMEVSMQYNDTYDEKIFSFANN 170

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEF 379
           I T EGGTH +G + ALTR +  YA      +     I  DDL      ++SV I +P+F
Sbjct: 171 INTHEGGTHLAGFKAALTRTMNTYAAGNNLTKNAKVAISGDDLREGMTCVISVKIPQPQF 230

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
            GQTKTKL + + +  VE+ L +    YL +NP  A ++LE  I
Sbjct: 231 EGQTKTKLGNSEVKGYVESLLNEKLAVYLEENPQVAKRILEKSI 274


>gi|209863371|gb|ACI88785.1| DNA gyrase subunit B [Aeromonas sp. JH87]
          Length = 335

 Score =  160 bits (404), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 121/347 (34%), Positives = 185/347 (53%), Gaps = 16/347 (4%)

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G P +PL++        GT + F P P IF D   F    L K  +  ++L+  V     
Sbjct: 1   GEPQAPLKQIGYSTG-TGTEVRFWPSPAIFSDTL-FHYEILAKRLRELSFLNSGVSIRLQ 58

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
            +++  E         F + GG+K +++   +N++ I  ++F   TE+ G     VE A+
Sbjct: 59  DERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTERDGI---GVEVAM 108

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W +     +  + N I   +GGTH  G R ALTR +  Y +      K   +   DD+ 
Sbjct: 109 QWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVR 168

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
              + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++NP +A  ++  +I
Sbjct: 169 EGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKII 228

Query: 424 ERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           + +  R   RK RE   RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ R
Sbjct: 229 DAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGR 288

Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           NR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC       
Sbjct: 289 NRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGRDEY 335


>gi|261362392|gb|ACX71597.1| DNA gyrase subunit B [Pseudomonas japonica]
          Length = 338

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 114/348 (32%), Positives = 178/348 (51%), Gaps = 16/348 (4%)

Query: 173 VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQ 232
           V R   I+ Q +  G+P +P++   +     GT+I F+P  + F +   F    L K  +
Sbjct: 2   VRRSGKIWEQVYVHGVPQAPMKIVGE-SETTGTQIHFKPSAETFKNIH-FSWDILAKRIR 59

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             ++L+  V      ++   +       E F + GGL+ +++    N++ ++        
Sbjct: 60  ELSFLNSGVGIMLKDERSGKD-------EHFCYEGGLRAFVEYLNTNKTAVNQVFHFSVQ 112

Query: 293 EKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ- 350
              G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y E    
Sbjct: 113 RDDGV---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNNYIEQEGL 169

Query: 351 -NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
             K  ++   DD       I+SV + +P+F+ QTK KLVS + +  VE  +   F  +L+
Sbjct: 170 AKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSDFLL 229

Query: 410 QNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFI 468
           +NP EA  ++  +I+ +  R   RK R    RK A+    LPGKLADC +     +EL++
Sbjct: 230 ENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYL 289

Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           VEGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++  L
Sbjct: 290 VEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMISSQEVGTL 337


>gi|210062264|gb|ACJ06181.1| GyrB [Aeromonas sp. ER.1.21]
          Length = 326

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 118/338 (34%), Positives = 182/338 (53%), Gaps = 16/338 (4%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LS++L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F  
Sbjct: 1   LSEKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHY 58

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             L K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I 
Sbjct: 59  EILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIH 111

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
            ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR + 
Sbjct: 112 PKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLN 168

Query: 344 KYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ 
Sbjct: 169 SYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMG 228

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNI 460
           +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +  
Sbjct: 229 EKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKD 288

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
              +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILN
Sbjct: 289 PALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILN 326


>gi|310707421|gb|ADP08981.1| gyrase B [Leptothrix ochracea]
          Length = 390

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 137/400 (34%), Positives = 196/400 (49%), Gaps = 21/400 (5%)

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE--KKEKVRNKRGTRITFRPDPKIFG 217
           SV NALS  L VTV R+  +    FS G  + PL     E+   K GT +   PD K F 
Sbjct: 1   SVTNALSTRLAVTVWREKQVAQLVFSGGDVIEPLTLRPAERAERKSGTAVRVWPDAKYFE 60

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
                  A L+ + +SKA L   V    S +K         E   + + GGL+ YLQ  L
Sbjct: 61  SA-ELPRAELIHLLRSKAVLMPGVTVTLSTEK-------TGETLTWLYKGGLRDYLQQSL 112

Query: 278 ENRS----LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHES 332
                      +   +    +         W +A+ E+      SY N I T  GGTHE+
Sbjct: 113 LAEPLIPLFEGAHHASSHESENFAEGEGAAWCVAFAEQGQSLRESYVNLIPTVAGGTHEA 172

Query: 333 GLRVALTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
           GL+  L   IK + ++     + + ++ DD+   A  +LS  + +P+F GQTK +L S D
Sbjct: 173 GLKEGLFSAIKAFIDMHSLLPKGVKLMPDDVFGRASFVLSAKVLDPQFQGQTKERLNSRD 232

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451
           A R V   ++  FD +L Q+     KL E VI +++ R +  ++ E  + + +  L  PG
Sbjct: 233 ALRLVSAYVKPAFDLWLGQHVEHGKKLAELVIRQAQARQKAGQKVEKRKGSGVAVL--PG 290

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL DC        ELF+VEGDSAGGSAK  RN+  QA+LPLRGK+LN      +++  N 
Sbjct: 291 KLTDCESRDLADNELFLVEGDSAGGSAKMGRNKETQAILPLRGKVLNTWEVDRDRLFANN 350

Query: 512 QIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDG 548
           +I D+  A+G    +     D   LRY K+ IMTDA+ DG
Sbjct: 351 EIHDIAVAIGVDPHAAGDTPDLSNLRYGKICIMTDAERDG 390


>gi|210078011|emb|CAR94873.1| DNA gyrase B subunit [Ochrobactrum pseudogrignonense]
          Length = 341

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 111/349 (31%), Positives = 183/349 (52%), Gaps = 12/349 (3%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L + + R   I    F+ G+  +PL       +  GT ++F P P+ F     FD   L 
Sbjct: 1   LKLKIRRAGKIHEMAFTHGVADAPLVITGDAGSDTGTEVSFLPSPETFS-MVEFDYDTLE 59

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           +  +  A+L+  V+   +  +    +         ++ GG+  +++   +++  +     
Sbjct: 60  RRLRELAFLNSGVRIKLTDRRHADIREQE-----LHYDGGVVEFVKYIDQSKKSLLETPI 114

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
             K+EK G    TVE A+ W +    ++  + N I   +GGTH +G R ALTR +  YA+
Sbjct: 115 YIKSEKDG---MTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRGALTRQVTGYAD 171

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
            +    K  +S+  DD       +LSV + +P+F+ QTK KLVS + +  VE+ + +   
Sbjct: 172 ASGMTKKEKVSLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVNEALS 231

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTE 465
            +L ++P     ++E VI+ +  R   RK R++ RK+ +    LPGKLADC +     +E
Sbjct: 232 TWLEEHPAGGKTIVEKVIQAAAAREAARKARDITRKSNLSVTSLPGKLADCQERDPAKSE 291

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           +FIVEGDSAGGSAK  R+R NQA+LPLRGKILNV     +++ ++ Q+ 
Sbjct: 292 IFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQVG 340


>gi|169248046|gb|ACA51806.1| DNA gyrase subunit B [Aliivibrio logei]
          Length = 334

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 120/342 (35%), Positives = 178/342 (52%), Gaps = 13/342 (3%)

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           +  G+P +PL       +  GT+I F P  + F +   F    L K  +  ++L+  V  
Sbjct: 2   YCHGVPQAPLAVIG-TTDTTGTKIRFWPSDQTFANI-EFVYDILAKRLRELSFLNSGVSI 59

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
                +E        + + F F GG+K ++     N++ +  +IF    E+K      VE
Sbjct: 60  RLQDMRE------EDKSDHFMFEGGIKAFVTHLNRNKTPVHQKIFYFDAERK-EDGIVVE 112

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISD 360
            A+ W +     I  Y N I   +GG H SG R ALTR +  + +      K   S   D
Sbjct: 113 VAMQWNDSYQENIFCYTNNIPQRDGGAHLSGFRSALTRTLNSFMDKEGFSKKAKSSASGD 172

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D       ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +L +NP EA  +  
Sbjct: 173 DAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLAEFLAENPGEAKMVCS 232

Query: 421 WVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
            +I+ +  R   RK R    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAK
Sbjct: 233 KIIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAK 292

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
           Q RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALG
Sbjct: 293 QGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALG 334


>gi|30793736|gb|AAM52930.1| DNA gyrase subunit beta [Aeromonas encheleia]
          Length = 321

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 116/332 (34%), Positives = 177/332 (53%), Gaps = 15/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++     +  GT + F P P IF D   +    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTL-YHYEILAKRLREL 59

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   EN++ I  ++F   TE+
Sbjct: 60  SFLNSGVSIRLEDERDGRE-------MHFCYEGGIKAFVEYVCENKTPIYPKVFHFSTEQ 112

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 113 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSK 169

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 170 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLSEFLLEN 229

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 230 PSDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 289

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 321


>gi|307343842|emb|CBJ19526.1| gyrase B subunit [Micromonospora sp. CR39]
          Length = 340

 Score =  159 bits (403), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 96/346 (27%), Positives = 174/346 (50%), Gaps = 9/346 (2%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           + V + +  +++ Q ++   P    +   +  ++ G+ ++F PDP +F     FD   + 
Sbjct: 1   MFVEIHKSGSVWRQHYTNSKPSPLEK--GEATDRTGSAVSFWPDPDVFETI-DFDFQTIY 57

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           +  Q  A+L+  +      ++   ++ G   +  F + GG+  +++    +++ +   + 
Sbjct: 58  RRLQEMAFLNRGITIHLLDERVAEDEDGKTREVTFRYDGGIADFVRHLNASKNPMHKTVV 117

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
             + E++G    ++E A+ W E     + ++ N I T EGGTHE G R ALT  + +Y  
Sbjct: 118 EFEAEEEG---MSLEIAMQWNESYGESVYTFANNINTHEGGTHEEGFRSALTSVVNRYGT 174

Query: 348 LTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
             +  +    +  +D+      I+SV +  P+F GQTKTKL +   +  V+    D    
Sbjct: 175 DKKLLKGDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTPVKSFVQRVCNDRLVD 234

Query: 407 YLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTE 465
           +  +NP EA  +++            ++ ++   RK+ +    +PGKLADC       +E
Sbjct: 235 WFDRNPAEAKTIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESE 294

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           +FIVEGDSAGGSAKQ R+   QA+LP+RGKILNV  A  +++  N 
Sbjct: 295 VFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNN 340


>gi|115381648|gb|ABI96506.1| gyrase B [Salmonella enterica subsp. enterica serovar Indiana]
          Length = 323

 Score =  159 bits (403), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 113/330 (34%), Positives = 176/330 (53%), Gaps = 14/330 (4%)

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
               +K GT + F P  + F +   F+   L K  +  ++L+  V       ++  E   
Sbjct: 4   TGDTDKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--- 60

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
               + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I
Sbjct: 61  ----DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENI 113

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV 
Sbjct: 114 YCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVK 173

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R
Sbjct: 174 VPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAAR 233

Query: 434 KQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           + R    RK A+    LPGKLADC +     +EL++VEGDSAGG AKQ RNR N A+LPL
Sbjct: 234 RAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGFAKQGRNRKNPAILPL 293

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           +GKILNV  A  +K+ ++Q+   L+ ALGC
Sbjct: 294 KGKILNVEKARFDKMLSSQEGATLIPALGC 323


>gi|115381642|gb|ABI96503.1| gyrase B [Salmonella enterica subsp. enterica serovar Java]
          Length = 323

 Score =  159 bits (403), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 112/330 (33%), Positives = 176/330 (53%), Gaps = 14/330 (4%)

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
               +K GT + F P  + F +   F+   L K  +  ++L+  V       ++  E   
Sbjct: 4   TGDTDKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--- 60

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
               + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I
Sbjct: 61  ----DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENI 113

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV 
Sbjct: 114 YCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVK 173

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R
Sbjct: 174 VPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAAR 233

Query: 434 KQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           + R    RK A+    LPGKLADC +     +EL++VEGD AGG AKQ RNR N A+LPL
Sbjct: 234 RAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDCAGGFAKQGRNRKNPAILPL 293

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           +GKILNV  A  +K+ ++Q++  L+ ALGC
Sbjct: 294 KGKILNVEKARFDKMLSSQEVATLIPALGC 323


>gi|321117374|dbj|BAJ72164.1| gyrase B [Erwinia sp. 'uzenensis']
          Length = 333

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 102/343 (29%), Positives = 172/343 (50%), Gaps = 15/343 (4%)

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
            R+  +  Q +  G+P + L    +  +  GTR+ F P  + F +   F+   L K  + 
Sbjct: 1   RREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRE 59

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            ++L+  V       ++        + + +++ GG+K +++   +N++ I    F   TE
Sbjct: 60  LSFLNSGVSIKLEDKRD-------GKNDHYHYEGGIKAFVEYLNKNKTPIHPNAFYFSTE 112

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350
           K G     VE A+ W +     I  + N I    GGTH +G R A+TR +  Y +     
Sbjct: 113 KDGI---GVEVALQWNDGFQENIYCFTNNIPQRGGGTHLAGFRAAMTRTLNAYMDKEGFS 169

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++
Sbjct: 170 KKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSFEVKSAVEQQMNELLFEYLLE 229

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNR-KTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           +P +A  ++  +I+ +  R    +  E+ R K A+    LPGKLADC +       +++V
Sbjct: 230 HPGDAKIVVGKIIDAARAREAAPRAXEMTRCKGALDLAGLPGKLADCQERDPALFXIYLV 289

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           EGD AGG AKQ RNR  QA+ PL+GKILNV     +K+  + +
Sbjct: 290 EGDFAGGFAKQGRNRKXQAIPPLKGKILNVEKTRFDKMLASPE 332


>gi|324962676|gb|ADY62440.1| gyrase subunit B [Frankia sp. BMG5.15]
          Length = 264

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 86/269 (31%), Positives = 125/269 (46%), Gaps = 23/269 (8%)

Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
           +L  +G + V DNGRGIPV  HP      T+E++LTTLHAGGKFD  +Y +SGGLHGVG+
Sbjct: 1   TLLADGGVRVTDNGRGIPVGEHP-VKKIPTVELVLTTLHAGGKFDGESYAVSGGLHGVGV 59

Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
           SVVNALS  L V +      + Q +    P  PL +    +    T ITF  DP IF   
Sbjct: 60  SVVNALSTRLDVEIQTDGHSWFQPYENSRPARPLAQTGTSKKTG-TTITFWADPTIFET- 117

Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA----------------EKYGIPEKEEF 263
             +    L +  Q  A+L+  +      ++  A                 +   P +  F
Sbjct: 118 TTYKYETLFRRLQEMAFLNKGLSITLRDERGKATAPATTTEEPTEAAKPVEAVEPTEVTF 177

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            +  GL  ++      +  +   + + +++  G      E A+ W       + ++ NTI
Sbjct: 178 KYDNGLVDFVGHLNATKDAVHRSVISLESKGTGI---EAELAMQWNSGYNESVYTFANTI 234

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN 351
            T EGGTHE G R ALT  +  YA+    
Sbjct: 235 NTHEGGTHEEGFRAALTSAVNAYAKDQNL 263


>gi|295979457|dbj|BAJ07401.1| DNA gyrase subunit B [alpha proteobacterium ISHR1]
          Length = 246

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 75/255 (29%), Positives = 125/255 (49%), Gaps = 12/255 (4%)

Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188
             E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS  L + V R       +F  G 
Sbjct: 1   AAEVIMTQLHAGGKFDSNSYKVSGGLHGVGVSVVNALSVWLELRVWRNGKEHVARFEHGE 60

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
            +  L+      ++ GT + F      F +   +    L K  +  A+L+  V+     +
Sbjct: 61  TVDHLKVVGDCGDRTGTEVRFLASTDTFSN-LDYSFETLEKRLRELAFLNSGVRILLEDE 119

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +        P K E ++ GG+K +++    ++S +  +      E+       +E A+ W
Sbjct: 120 R-----PAEPLKTELHYDGGVKEFVKYLDRSKSPMMEDPIYITGERDDI---GIEVAMWW 171

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMIS 365
            +     +  + N I   +GGTH +G R ALTR + KYA+ +   +        DD    
Sbjct: 172 NDSYHETVLPFTNNIPQRDGGTHLAGFRGALTRTLTKYAQESGIAKREKVSFTGDDAREG 231

Query: 366 AVGILSVFIREPEFA 380
              +LSV + +P+F+
Sbjct: 232 LTCVLSVKVPDPKFS 246


>gi|156536670|gb|ABU80439.1| gyrase B [Photorhabdus temperata]
          Length = 317

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 114/328 (34%), Positives = 171/328 (52%), Gaps = 15/328 (4%)

Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
            +  G+P SPL+   +   + GTR+ F P    F +   F    L K  +  ++L+  V 
Sbjct: 1   TYHLGVPQSPLKVVGET-EQTGTRVRFWPSMDTFSNNTEFQHDILAKRLRELSFLNSGVS 59

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
                 +   E       + F++ GG+K +++   +N++ I   +F   TEK       V
Sbjct: 60  IRLLDKRTNIE-------DHFHYKGGIKAFVEFLNKNKTPIHPNVFYFSTEKDSI---GV 109

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIIS 359
           E A+ W +     I  + N I   +GGTH  G R A+TR +  Y +      K  +S   
Sbjct: 110 EVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSKVSATG 169

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD     V ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++
Sbjct: 170 DDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPNDAKTVV 229

Query: 420 EWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
             +I+ +  R   RK R    RK A+    LPGKLADC +     +EL++VEGDSAGGSA
Sbjct: 230 GKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSA 289

Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEK 506
           KQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 290 KQGRNRKNQAILPLKGKILNVEKARFDK 317


>gi|321117360|dbj|BAJ72157.1| gyrase B [Erwinia sp. 'uzenensis']
          Length = 333

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 103/343 (30%), Positives = 174/343 (50%), Gaps = 15/343 (4%)

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
            R+  +  Q +  G+P + L    +  +  GTR+ F P  + F +   F+   L K  + 
Sbjct: 1   RREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRE 59

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            ++L+  V       ++        + + +++ GG+K +++   +N++ I    F   TE
Sbjct: 60  LSFLNSGVSIKLEDKRD-------GKNDHYHYEGGIKAFVEYLNKNKTPIHPNAFYFSTE 112

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350
           K G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +     
Sbjct: 113 KDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGFS 169

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++
Sbjct: 170 KKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSFEVKSAVEQQMNELLFEYLLE 229

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNR-KTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           +P +A  ++  +I+ +  R    + RE+ R K A+    LPGKLADC +       +++V
Sbjct: 230 HPGDAKIVVGKIIDAARAREAAPRAREMTRCKGALDLAGLPGKLADCQERDPALFXIYLV 289

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           EGD AGG AKQ RNR  QA+ PL+GKILNV     +K+  + +
Sbjct: 290 EGDFAGGFAKQGRNRKXQAIPPLKGKILNVEKTRFDKMLASPE 332


>gi|7242882|dbj|BAA92529.1| type II DNA topoisomerase [Bangia atropurpurea]
          Length = 402

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 88/431 (20%), Positives = 152/431 (35%), Gaps = 40/431 (9%)

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           N  ++V +NG GIPV  H K       E+I   L     +D+   ++ GG +G G  + N
Sbjct: 1   NNRVSVWNNGAGIPVAMHAK-EGVYVPELIFGHLLTSSNYDDGEKKVVGGRNGYGAKLAN 59

Query: 164 ALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEKVRNKR--GTRITFRPD--PKIFG 217
             S    V  A       + Q F+R +              +   TRITF PD       
Sbjct: 60  IFSTRFVVETADAASGKTYKQTFTRNMMDRGAPSIRASAKPKDAWTRITFEPDLPKFHMA 119

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
                  A L       A +   +    +  +     +                Y+   L
Sbjct: 120 ALDADAVAVLQMRVVDMAGVVPGIGVYLNGARLKVRNF--------------SQYVALHL 165

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337
            +                    G  E  ++  +   + TS+ N+I T +GGTH + +   
Sbjct: 166 ADAPDAPRIH--------DDASGRWEVVVSLSDGQMQQTSFVNSISTTKGGTHVTHVADQ 217

Query: 338 LTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           L   I+++    +  + + +    +       +   +  P F  QTK  L S  +    +
Sbjct: 218 LVSRIQEHIA--KRHKTLKVKPFQIKSQLSIFVKCLVENPAFDSQTKEMLTSRPSTFGSK 275

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
               D          +  + ++E V+  +E R  +   +    K A          A+ +
Sbjct: 276 WVCPDKMAR-----DLMKSGVVESVLSLAESRQSKELAKTDGGKRARVTGIAKLDDANQA 330

Query: 458 -QNIAHGTELFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
               +    L + EGDSA   A    +   R    V PLRGK+LNV  A  ++I +N +I
Sbjct: 331 GTRDSAKCTLILTEGDSAKALAISGLSVLGRDYYGVFPLRGKLLNVREATHKQIMDNAEI 390

Query: 514 MDLVQALGCRT 524
            +L + +G + 
Sbjct: 391 TNLKKIIGLQH 401


>gi|321117356|dbj|BAJ72155.1| gyrase B [Erwinia sp. 'uzenensis']
          Length = 333

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 101/343 (29%), Positives = 172/343 (50%), Gaps = 15/343 (4%)

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
            R+  +  Q +  G+P + L    +  +  GTR+ F P  + F +   F+   L K  + 
Sbjct: 1   RREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRE 59

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            ++L+  V       ++        + + +++ GG+K +++   +N++ I    F   TE
Sbjct: 60  LSFLNSGVSIKLEDKRD-------GKNDHYHYEGGIKAFVEYLNKNKTPIHPNAFYFSTE 112

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350
           K G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +     
Sbjct: 113 KDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGXS 169

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++
Sbjct: 170 KKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSFEXKLAVEQQMNELLFEYLLE 229

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNR-KTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           +P +   ++  +I+ +  R    +  E  R K A+    LPGKLADC +       +++V
Sbjct: 230 HPGDXKIVVGKIIDAARAREAAPRAPEXTRCKGALDLAGLPGKLADCQEXDPALFXIYLV 289

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           EGD AGG AKQ RNR NQA+ P++GKILNV     +K+  + +
Sbjct: 290 EGDFAGGFAKQGRNRKNQAJPPVKGKILNVEKTRFDKMLASPE 332


>gi|322875020|gb|ADX20833.1| DNA gyrase subunit B [Fluoribacter dumoffii]
          Length = 208

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 78/220 (35%), Positives = 123/220 (55%), Gaps = 14/220 (6%)

Query: 113 GRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVT 172
           GRGIPV+ H K   +S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+ELH+T
Sbjct: 1   GRGIPVDIH-KEEGRSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLT 59

Query: 173 VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQ 232
           V R   I  Q +  G+P +P+ +        GT+I F+P  + F +   F    L K  +
Sbjct: 60  VRRHGKIHEQHYRNGVPEAPMVETGDAT-TTGTQIWFKPSAETFSN-IEFHYDILAKRLR 117

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             +YL+  V      ++          ++ F++ GG+K +++   +N+++I   +F+   
Sbjct: 118 ELSYLNSGVCIHLFDERSQ-------RQDTFHYEGGIKAFVEHLNKNKNVIIPTVFSMSA 170

Query: 293 EKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHE 331
           EK       VE ++ W +   E    + N I   +GGTH 
Sbjct: 171 EKDNI---VVELSMQWNDSYQETLYCFTNNIPQRDGGTHM 207


>gi|115381646|gb|ABI96505.1| gyrase B [Salmonella enterica subsp. enterica serovar Indiana]
          Length = 323

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 112/330 (33%), Positives = 177/330 (53%), Gaps = 14/330 (4%)

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256
               +K GT + F P  + F +   F+   L K  +  ++L+  V       ++  E   
Sbjct: 4   TGDTDKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--- 60

Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315
               + F++ GG+K +++   +N++ I   IF   TEK G     VE A+ W +     I
Sbjct: 61  ----DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENI 113

Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373
             + N I   +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV 
Sbjct: 114 YCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVK 173

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433
           + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R
Sbjct: 174 VPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAAR 233

Query: 434 KQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492
           + R    RK A+    LPGKLADC +     +EL++VEGDSAGG AKQ RNR N A+LPL
Sbjct: 234 RAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGFAKQGRNRKNPAILPL 293

Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           +GKILNV ++  +K+ ++Q+   L+ ALGC
Sbjct: 294 KGKILNVENSRFDKMLSSQEGATLITALGC 323


>gi|94509|pir||JC1160 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain B -
           Buchnera aphidicola (fragment)
          Length = 86

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 40/83 (48%), Positives = 60/83 (72%), Gaps = 1/83 (1%)

Query: 42  DNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           D YD+S I+IL GL+ VR RPGMYIG TD+   LHH+  E++DN++DE +AG+   I+V 
Sbjct: 3   DTYDSSKIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVFEIVDNSIDEALAGFCKEIKVV 62

Query: 101 LDGNGFLTVVDNGRGIPVENHPK 123
           +  +  +++ D+GRGIP + HP+
Sbjct: 63  IHSDNSVSIKDDGRGIPTDIHPE 85


>gi|321117352|dbj|BAJ72153.1| gyrase B [Erwinia sp. 'uzenensis']
          Length = 333

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 103/343 (30%), Positives = 174/343 (50%), Gaps = 15/343 (4%)

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
            R+  +  Q +  G+P + L    +  +  GTR+ F P  + F +   F+   L K  + 
Sbjct: 1   RREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRE 59

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            ++L+  V       ++        + + +++ GG+K +++   +N++ I    F   TE
Sbjct: 60  LSFLNSGVSIKLEDKRD-------GKNDHYHYEGGIKAFVEYLNKNKTPIHPNAFYFSTE 112

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350
           K G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +     
Sbjct: 113 KDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGXS 169

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++
Sbjct: 170 KKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSFEVKSAVEQQMNELLFEYLLE 229

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNR-KTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           +P +A  ++  +I+ +  R    + RE+ R K A+    LPGKLADC +       +++V
Sbjct: 230 HPGDAKIVVGKIIDAARAREAAPRAREMTRCKGALDLAGLPGKLADCQERDPALFXIYLV 289

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           EGD AGG AKQ RNR  QA+ PL+GKILNV     +K+  + +
Sbjct: 290 EGDFAGGFAKQGRNRKKQAIPPLKGKILNVEKXRFDKMLASPE 332


>gi|110224956|dbj|BAE97467.1| DNA gyrase subunit B [Streptococcus acidominimus]
          Length = 300

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 97/302 (32%), Positives = 161/302 (53%), Gaps = 12/302 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS +L V V +   ++ Q++ RG  ++ L+   +  ++ G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVHVYKNGQVYFQEYHRGEVVADLKVVGET-DRSG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PDP+IF +   FD A+L K  Q  A+L+  +    +  +E  E+        ++
Sbjct: 60  TTVHFTPDPEIFNETTEFDFAKLNKRIQELAFLNRGLNLSITDKREGLEQTKE-----YH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+ +Y++   EN+ +I       + E       TVE A+ +     E   S+ N I 
Sbjct: 115 YEGGIASYVEYLNENKDVIFETPIYTEGEMDDI---TVEVAMQYTTSYHENVVSFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G R ALTR I  YA+ ++   +   ++  +D+      ++SV    P+F G
Sbjct: 172 THEGGTHEQGFRTALTRVINDYAKKSKILKENEDNLTGEDVREGLTAVISVKHPGPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + +  +       + F  +L++NP  A ++++  I  S+ R+  ++ REV RK
Sbjct: 232 QTKTKLGNSEVVKITNRLFSEAFSEFLLENPQLARRIVDKGILASKARIAAKRAREVTRK 291

Query: 442 TA 443
            +
Sbjct: 292 KS 293


>gi|321117342|dbj|BAJ72148.1| gyrase B [Erwinia sp. 'uzenensis']
          Length = 333

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 103/343 (30%), Positives = 173/343 (50%), Gaps = 15/343 (4%)

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
            R+  +  Q +  G+P + L    +  +  GTR+ F P  + F +   F+   L K  + 
Sbjct: 1   RREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRE 59

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            ++L+  V       ++        + + +++ GG+K +++   +N++ I    F   TE
Sbjct: 60  LSFLNSGVSIKLEDKRD-------GKNDHYHYEGGIKAFVEYLNKNKTPIHPNAFYFSTE 112

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350
           K G     VE A+ W +     I  + N I    GGTH +G R A+TR +  Y +     
Sbjct: 113 KDGI---GVEVALQWNDGFQENIYCFTNNIPQRGGGTHLAGFRAAMTRTLNAYMDKEGFS 169

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++
Sbjct: 170 KKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSFEVKSAVEQQMNELLFEYLLE 229

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNR-KTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           +P +A  ++  +I+ +  R    + RE+ R K A+    LPGKLADC +       +++V
Sbjct: 230 HPGDAKIVVGKIIDAARAREAAPRAREMTRCKGALDLAGLPGKLADCQERDPALFXIYLV 289

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           EGD AGG AKQ RNR  QA+ PL+GKILNV     +K+  + +
Sbjct: 290 EGDFAGGFAKQGRNRKKQAIPPLKGKILNVEKTRFDKMLASPE 332


>gi|187765678|gb|ACD36626.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765680|gb|ACD36627.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765682|gb|ACD36628.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765684|gb|ACD36629.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765686|gb|ACD36630.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765688|gb|ACD36631.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765690|gb|ACD36632.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765692|gb|ACD36633.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765694|gb|ACD36634.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765696|gb|ACD36635.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765698|gb|ACD36636.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765700|gb|ACD36637.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765702|gb|ACD36638.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765704|gb|ACD36639.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765706|gb|ACD36640.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765708|gb|ACD36641.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765710|gb|ACD36642.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765712|gb|ACD36643.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765714|gb|ACD36644.1| DNA gyrase subunit B [Vibrio parahaemolyticus AN-5034]
 gi|187765716|gb|ACD36645.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765718|gb|ACD36646.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765720|gb|ACD36647.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765722|gb|ACD36648.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765724|gb|ACD36649.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765726|gb|ACD36650.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765728|gb|ACD36651.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765730|gb|ACD36652.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765732|gb|ACD36653.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765734|gb|ACD36654.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765736|gb|ACD36655.1| DNA gyrase subunit B [Vibrio parahaemolyticus AQ4037]
 gi|187765738|gb|ACD36656.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765740|gb|ACD36657.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765742|gb|ACD36658.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765744|gb|ACD36659.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765746|gb|ACD36660.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765748|gb|ACD36661.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765750|gb|ACD36662.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765752|gb|ACD36663.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765754|gb|ACD36664.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765756|gb|ACD36665.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
 gi|187765758|gb|ACD36666.1| DNA gyrase subunit B [Vibrio parahaemolyticus]
          Length = 185

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 68/191 (35%), Positives = 111/191 (58%), Gaps = 9/191 (4%)

Query: 106 FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNAL 165
            ++V D+GRGIP E HP+    S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNAL
Sbjct: 1   SVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNAL 59

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225
           S+++ +T+ R   I +Q +  G P +PL       +K GT+I F P  + F +   F   
Sbjct: 60  SEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKTGTQIRFWPSAETFSN-TEFHYD 117

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
            L K  +  ++L+  V      ++E        +++ F + GG++ ++Q    N++ I  
Sbjct: 118 ILAKRLRELSFLNSGVSIKLIDEREAD------KQDHFMYEGGIQAFVQHLNTNKTPIIE 171

Query: 286 EIFTGKTEKKG 296
           +IF    E++ 
Sbjct: 172 KIFHFDLERED 182


>gi|164456723|dbj|BAF97854.1| gyrase B subunit [Vibrio rotiferianus]
          Length = 280

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 86/290 (29%), Positives = 149/290 (51%), Gaps = 13/290 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL        + G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVVGDT-EQTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+I F P  + F +   F    L K  +  ++L+  V      ++E        + + F 
Sbjct: 60  TQIRFWPSAETFTN-IEFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KSDHFM 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           F GG++ +++    N++ I  +IF    E++      VE A+ W +     I  + N I 
Sbjct: 113 FEGGIQAFVEHLNTNKTPIIEKIFHFDFERED--GIAVEVAMQWNDGFQENIYCFTNNIP 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ 
Sbjct: 171 QRDGGTHLAGFRAALTRTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSS 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           QTK KLVS + +  VE+A+ +    +L++NP EA  +   +I+ +  R  
Sbjct: 231 QTKDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCTKIIDAARAREA 280


>gi|321117366|dbj|BAJ72160.1| gyrase B [Erwinia sp. 'uzenensis']
          Length = 333

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 103/343 (30%), Positives = 174/343 (50%), Gaps = 15/343 (4%)

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
            R+  +  Q +  G+P + L    +  +  GTR+ F P  + F +   F+   L K  + 
Sbjct: 1   RREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRE 59

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            ++L+  V       ++        + + +++ GG+K +++   +N++ I    F   TE
Sbjct: 60  LSFLNSGVSIKLEDKRD-------GKNDHYHYEGGIKAFVEYLNKNKTPIHPNAFYFSTE 112

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350
           K G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +     
Sbjct: 113 KDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGFS 169

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++
Sbjct: 170 KKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSFEVKSAVEQQMNELLFEYLLE 229

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNR-KTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           +P +A  ++  +I+ +  R    + RE+ R K A+    LPGKLADC +       +++V
Sbjct: 230 HPGDAKIVVGKIIDAARAREAAPRAREMTRCKGALDLAGLPGKLADCQERDPALFXIYLV 289

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           EGD AGG AKQ RNR  QA+ PL+GKILNV     +K+  + +
Sbjct: 290 EGDFAGGFAKQGRNRKKQAIPPLKGKILNVEKTRFDKMLASXE 332


>gi|321117364|dbj|BAJ72159.1| gyrase B [Erwinia sp. 'uzenensis']
          Length = 333

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 104/343 (30%), Positives = 175/343 (51%), Gaps = 15/343 (4%)

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
            R+  +  Q +  G+P + L    +  +  GTR+ F P  + F +   F+   L K  + 
Sbjct: 1   RREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRE 59

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            ++L+  V       ++        + + +++ GG+K +++   +N++ I    F   TE
Sbjct: 60  LSFLNSGVSIKLEDKRD-------GKNDHYHYEGGIKAFVEYLNKNKTPIHPNAFYFSTE 112

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350
           K G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +     
Sbjct: 113 KDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGFS 169

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++
Sbjct: 170 KKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSFEVKSAVEQQMNELLFEYLLE 229

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNR-KTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           +P +A  ++  +I+ +  R   R+ RE+ R K A+    LPGKLADC +       +++V
Sbjct: 230 HPGDAKIVVGKIIDAARAREAARRAREMTRCKGALDLAGLPGKLADCQERDPALFXIYLV 289

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           EGD AGG AKQ RNR  QA+ PL+GKILNV     +K+  + +
Sbjct: 290 EGDFAGGFAKQGRNRKKQAIPPLKGKILNVEKTRFDKMLASPE 332


>gi|19571729|emb|CAD19165.1| topoisomerase IV [Stenotrophomonas maltophilia]
          Length = 160

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/161 (45%), Positives = 101/161 (62%), Gaps = 1/161 (0%)

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           PGKLADC       TELF+VEGDSAGGSAKQAR++  QA++PLRGKILN     S  +  
Sbjct: 1   PGKLADCISQDLSRTELFLVEGDSAGGSAKQARDKDFQAIMPLRGKILNTWEVSSNSVLA 60

Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
           ++++ +L  A+GC          LRY KVII+ DAD DG HIA+LL   F +    L++ 
Sbjct: 61  SEEVHNLAIAIGCDPGKDDI-SGLRYGKVIILADADSDGLHIATLLTALFLKHFPALVDA 119

Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610
            H+F+  PP+FRI  G +  YA DEE K+ +L++ ++    
Sbjct: 120 GHVFVAMPPVFRIDVGKQVFYALDEEEKRSMLDKIERDKIK 160


>gi|188039939|gb|ACD47144.1| DNA gyrase subunit B [Acinetobacter sp. HY-7]
          Length = 314

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 101/326 (30%), Positives = 162/326 (49%), Gaps = 16/326 (4%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+++Y++SGGLHGVG+SVVNALS +L +T+ R   I  Q++  G P  PL+   + 
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSSKLELTIYRAGQIHHQEYRHGDPQYPLKVIGET 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            N  GT + F P  + F     F+   L +  +  ++L+  V+     ++   E      
Sbjct: 61  TN-TGTIVRFWPSAETFSQTI-FNVDILARRLRELSFLNAGVRIILRDERVAFE------ 112

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              + + GGL  +++   + ++ ++           G     VE A+ W +     +  +
Sbjct: 113 -HVYDYEGGLSEFVKYINQGKTHLNDIFHFTTQADNGI---GVEVALQWNDTYQENVRCF 168

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +G R ALTRG+  Y E      K  +++  DD       I+SV + +
Sbjct: 169 TNNIPQKDGGTHLAGFRAALTRGLNSYMENESLLKKEKVAVTGDDAREGLTAIISVKVPD 228

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQ 435
           P+F+ QTK KLVS + +  VE A+   F  YL++NP  A  +   +I         R+ +
Sbjct: 229 PKFSSQTKEKLVSSEVKPAVEQAMNKAFSEYLLENPQAAKSIAGKIIDAARARDAARKAR 288

Query: 436 REVNRKTAIRKLRLPGKLADCSQNIA 461
               RK+A+    LPGKLADC +   
Sbjct: 289 EMTRRKSALDIAGLPGKLADCQEKDP 314


>gi|210078013|emb|CAR94874.1| DNA gyrase B subunit [Ochrobactrum thiophenivorans]
          Length = 341

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 113/349 (32%), Positives = 184/349 (52%), Gaps = 12/349 (3%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L + V R   I    F+ G+  +PL       ++ GT ++F P P  F     FD   L 
Sbjct: 1   LKLKVRRAGKIHEIAFTHGVADAPLIVTGDAGSETGTEVSFLPSPDTFT-MVEFDFDTLE 59

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           +  +  A+L+  V+   +  +    K         ++ GG+  +++   +++  +  E  
Sbjct: 60  RRLRELAFLNSGVRIKLADRRHADVKEHE-----LHYDGGVVEFVRYLDQSKKSLLQEPI 114

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
             ++EK G    TVE A+ W +    ++  + N I   +GGTH +G R ALTR +  YA+
Sbjct: 115 YIRSEKDG---MTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRGALTRQVTGYAD 171

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
            +    K  +S+  DD       +LSV + +P+F+ QTK KLVS + +  VE+ + +   
Sbjct: 172 SSGMTKKEKVSLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVNEALS 231

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTE 465
            +L ++P     ++E VI+ +  R   RK R++ RK+ +    LPGKLADC +     +E
Sbjct: 232 TWLEEHPAGGKIIVEKVIQAAAAREAARKARDITRKSNLSVTSLPGKLADCQERDPAKSE 291

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           +FIVEGDSAGGSAK  R+R NQA+LPLRGKILNV     +++ ++ Q+ 
Sbjct: 292 IFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQVG 340


>gi|62084084|dbj|BAD91449.1| DNA gyrase subunit B [Streptococcus iniae]
 gi|110224986|dbj|BAE97482.1| DNA gyrase subunit B [Streptococcus iniae]
          Length = 300

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 99/302 (32%), Positives = 156/302 (51%), Gaps = 12/302 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS +L V V +   I+ Q+F RG+    L       +  G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVRVYKNGNIYYQEFKRGVVGEDLAIIGST-DLSG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PDP+IF +   FD  +L K  Q  A+L+  +K   +  ++  E     +++ F+
Sbjct: 60  TTVHFTPDPEIFTETVVFDFDKLAKRIQELAFLNRGLKISIADKRKDIE-----QEKNFH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+ +Y++   E + +I         E  G     VE A+ +     E   S+ N I 
Sbjct: 115 YEGGIASYVEYLNEKKDVIIESPIYTDGEMDGI---AVEVAMQYTTSYHENVMSFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G R ALTR I  YA+  +   +   ++  +D+      ++SV    P+F G
Sbjct: 172 THEGGTHEQGFRTALTRVINDYAKKNKILKENDDNLTGEDVREGLTAVISVKHPNPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + +  +       D F  +L++NP  A ++++  I  S+ R+  ++ REV RK
Sbjct: 232 QTKTKLGNSEVVKITNRLFSDAFQRFLLENPQVARRIVDKGILASKARIAAKRAREVTRK 291

Query: 442 TA 443
            +
Sbjct: 292 KS 293


>gi|285026261|dbj|BAI67859.1| DNA gyrase B [Rubritalea sp. shu-10-MA45-1]
          Length = 360

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 107/364 (29%), Positives = 175/364 (48%), Gaps = 18/364 (4%)

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDA 224
           SD     V R+  +    F RG    PL+        K GT++TF PD  IF D   F+ 
Sbjct: 1   SDWFKAEVTREGKVHLITFERGKTKQPLKVIGDAPSGKTGTKVTFFPDATIFVDTIEFEF 60

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
            RL    +   +L+  +           E      KE F++  G++ +++   ++++ + 
Sbjct: 61  DRLATRLRELTFLNPGLTIVLED-----ENPEKTRKETFFYARGIEEFVEQLSQSKTTVH 115

Query: 285 SEIFTGKTEKKGTHRGT---------VEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
                   ++K                +    + +   +    Y N+I   +GG H +G 
Sbjct: 116 ESPVILHGKRKVEIDYDGKVVEDDVFADIVFQYNDSYQDNILCYANSIPNADGGAHLTGF 175

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR I +YA++ +    +  ++  DD+    + ++SV +  P F+ QTK KLV+ + 
Sbjct: 176 RGALTRSINQYAKVNKILKDKDPALSGDDVREGIICVISVKMPNPRFSSQTKDKLVNAEI 235

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452
           +  V + + +    Y  +NP  A ++++  +     R   RK RE  RK+ +    LPGK
Sbjct: 236 EGVVGSIVYEGLQTYFDENPNLAKQIIDKAVNAXRAREAARKARETVRKSVMSGGGLPGK 295

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADCS+     +E++IVEGDSAGGSAK  RNR  QA+LPLRGK++NV  A   K   N++
Sbjct: 296 LADCSERDPAKSEIYIVEGDSAGGSAKSGRNRLTQAILPLRGKVINVEKARLHKALQNRE 355

Query: 513 IMDL 516
           I  +
Sbjct: 356 IQAM 359


>gi|33333784|gb|AAQ11993.1| topoisomerase II [Gibberella zeae]
          Length = 415

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 91/426 (21%), Positives = 170/426 (39%), Gaps = 24/426 (5%)

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           ++  +      K    ++   TRITF+PD K FG + G D      M +    + G ++ 
Sbjct: 3   WTDNMNTMHKAKITASKSASYTRITFKPDFKRFGMEDGIDDDLESLMYRRVYDMVGTIRG 62

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
                     K    +     +   +      +       + E+       K       E
Sbjct: 63  IKVFLNGEQVKIKDFKAYCDLYAKSIAKDRLDEEGGSPTCTVEM------DKDKSHPRWE 116

Query: 304 WAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLM 363
              A  +   +  S+ N+I T  GGTH + +   +T+ +     L + ++  ++  + L 
Sbjct: 117 VGFAVSDGTFQQVSFVNSIATTAGGTHVNYIADQITKSLLN--TLNKKRKGHTLKQNHLR 174

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                 ++ +I  P F+ QTK ++ +  +Q   +  L D F   + +     +  ++ ++
Sbjct: 175 NHIFVFINCYIDNPAFSSQTKEQMTTKASQFGSKCTLGDDFLKKVAK-----SDAIQNIL 229

Query: 424 ERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR- 482
           + +E++  +   +    K +        +         H   L + EGDSA G A   R 
Sbjct: 230 DMAEKKADKMMAKSDGNKRSRVNNAKLVEANFAGTRRGHECTLILTEGDSAKGLAVSGRA 289

Query: 483 --NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVI 539
             +     VLPLRGK+LNV  A  ++I  NQ+I ++ Q LG + ++ Y +   LRY  ++
Sbjct: 290 ILDPDRIGVLPLRGKLLNVRDASPDQIAKNQEIQNIKQFLGLKHKTSYTDTKNLRYGHLM 349

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQK-HLFLISPPLFRITQG------TKSVYAH 592
           IM D D DG+HI  LL+ F   +   L+           P+ ++ QG       K     
Sbjct: 350 IMADQDHDGSHIKGLLINFLEVQFPSLLRIPDFFREFITPIVKVWQGPNPKKPQKLKSFF 409

Query: 593 DEEHKQ 598
            +   +
Sbjct: 410 TQLEYE 415


>gi|156536666|gb|ABU80437.1| gyrase B [Photorhabdus sp. H3086]
          Length = 318

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 113/329 (34%), Positives = 170/329 (51%), Gaps = 15/329 (4%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            +  Q +  G+P S  +   +   + GTR+ F P    F +   F    L K  +  ++L
Sbjct: 1   KVHEQTYHLGVPQSSPKVVGET-EQTGTRVRFWPSMDTFRNNTEFQHDILAKRLRELSFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V       +   E       + F++ GG+K +++   +N++ I   +F   TEK G 
Sbjct: 60  NSGVSIRLLDKRTNIE-------DHFHYEGGIKAFVEFLNKNKTPIHPNVFYFSTEKDGI 112

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRA 354
               VE A+ W +     I  + N I   +GGTH  G R A+TR +  Y +      K  
Sbjct: 113 ---GVEAALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSK 169

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +S   DD     V ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +
Sbjct: 170 VSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPND 229

Query: 415 ATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++  +I+ +  R   RK R    RK A+    LPGKLADC +     +EL++VEGDS
Sbjct: 230 AKTVVSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDS 289

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASA 502
           AGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 AGGSAKQGRNRKNQAILPLKGKILNVGEA 318


>gi|210078007|emb|CAR94871.1| DNA gyrase B subunit [Ochrobactrum sp. CCUG 50899]
          Length = 341

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 110/349 (31%), Positives = 180/349 (51%), Gaps = 12/349 (3%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L + + R   I    F+ G+  +PL       +  GT ++F P P  F     FD   L 
Sbjct: 1   LKLKIRRAGKIHEMAFTHGVADAPLIVTGDAGSDTGTEVSFLPSPDTFT-MIEFDYDTLE 59

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           +  +  A+L+  V+   +  +    +         ++ GG+  +++   + +  +     
Sbjct: 60  RRLRELAFLNSGVRIKLADRRHADIREQE-----LHYDGGVIEFVKYIDKGKKALLETPI 114

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
             K+EK G    TVE A+ W +    ++  + N I   +GGTH +G R ALTR +  YA+
Sbjct: 115 YIKSEKDG---MTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRGALTRQVTGYAD 171

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
            +    K  + +  DD       +LSV + +P+F+ QTK KLVS + +  VE+ + +   
Sbjct: 172 ASGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVNEALS 231

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTE 465
            +L ++P     ++E VI+ +  R   RK R++ RK+ +    LPGKLADC +     +E
Sbjct: 232 TWLEEHPAGGKTIVEKVIQAAAAREAARKARDITRKSNLSVTSLPGKLADCQERDPAKSE 291

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           +FIVEGDSAGGSAK  R+R NQA+LPLRGKILNV     +++ ++ Q+ 
Sbjct: 292 IFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQVG 340


>gi|321117362|dbj|BAJ72158.1| gyrase B [Erwinia sp. 'uzenensis']
          Length = 333

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 103/343 (30%), Positives = 174/343 (50%), Gaps = 15/343 (4%)

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
            R+  +  Q +  G+P + L    +  +  GTR+ F P  + F +   F+   L K  + 
Sbjct: 1   RREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRE 59

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            ++L+  V       ++        + + +++ GG+K +++   +N++ I    F   TE
Sbjct: 60  LSFLNSGVSIKLEDKRD-------GKNDHYHYEGGIKAFVEYLNKNKTPIHPNAFYFSTE 112

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350
           K G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +     
Sbjct: 113 KDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYS 169

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++
Sbjct: 170 KKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSFEVKSAVEQQMNELLFEYLLE 229

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNR-KTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           +P +A  ++  +I+ +  R    + RE+ R K A+    LPGKLADC +       +++V
Sbjct: 230 HPGDAKIVVGKIIDAARAREAAPRAREMTRCKGALDLAGLPGKLADCQERDPALFXIYLV 289

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           EGD AGG AKQ RNR  QA+ PL+GKILNV     +K+  + +
Sbjct: 290 EGDFAGGFAKQGRNRKKQAIPPLKGKILNVEKTRFDKMLASPE 332


>gi|30793658|gb|AAM52891.1| DNA gyrase subunit beta [Aeromonas encheleia]
 gi|30793686|gb|AAM52905.1| DNA gyrase subunit beta [Aeromonas eucrenophila]
 gi|30793698|gb|AAM52911.1| DNA gyrase subunit beta [Aeromonas encheleia]
 gi|30793708|gb|AAM52916.1| DNA gyrase subunit beta [Aeromonas encheleia]
 gi|30793716|gb|AAM52920.1| DNA gyrase subunit beta [Aeromonas encheleia]
 gi|30793718|gb|AAM52921.1| DNA gyrase subunit beta [Aeromonas encheleia]
 gi|92919006|gb|ABE96850.1| DNA gyrase subunit B [Aeromonas encheleia]
          Length = 321

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 115/332 (34%), Positives = 177/332 (53%), Gaps = 15/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++     +  GT + F P P IF D   +    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTL-YHYEILAKRLREL 59

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 60  SFLNSGVSIRLEDERDGRE-------MHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQ 112

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 113 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSK 169

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 170 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLEN 229

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 230 PSDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 289

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 321


>gi|62084086|dbj|BAD91450.1| DNA gyrase subunit B [Streptococcus porcinus]
          Length = 300

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 98/302 (32%), Positives = 158/302 (52%), Gaps = 12/302 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS +L V V +   I  Q+F RG+ +  L+   +     G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEFRRGVVVDDLKIIGET-ELTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PDP+IF +   F+  +L K  Q  A+L+  ++   S  +      G+ ++++F+
Sbjct: 60  TTVHFTPDPEIFTETVIFNFDKLAKRIQELAFLNRGLRISISDKR-----PGMQQEKDFH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+ +Y++   E + +I         E  G     VE A+ +     E   S+ N I 
Sbjct: 115 YEGGIGSYVEYLNEKKDVIIETPIYTDGEMDGI---AVEVAMQYTTGYHENVMSFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G R ALTR I  YA+  +   +   ++  +D+      ++SV    P+F G
Sbjct: 172 THEGGTHEQGFRTALTRVINDYAKKNKILKENDDNLTGEDVREGLTAVISVKHPNPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + +  +       + F  +L++NP  A +++E  I  S+ R+  ++ REV RK
Sbjct: 232 QTKTKLGNSEVVKITNRLFSEAFHRFLLENPQIARRIVEKGILASKARIAAKRAREVTRK 291

Query: 442 TA 443
            +
Sbjct: 292 KS 293


>gi|159576558|dbj|BAF92827.1| DNA gyrase subunit B [Halomonas alimentaria]
          Length = 324

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 118/336 (35%), Positives = 174/336 (51%), Gaps = 16/336 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG+SVVNALS+EL +TV R   ++ Q +  G+P +PL    K     GTR+
Sbjct: 1   YKVFGGLHGVGVSVVNALSEELRLTVWRAGDVYEQLYRHGVPQAPLSVVGKTEK-SGTRV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            FRP P+ FG+   +    L K  +  ++L+  V      ++   E       E F++ G
Sbjct: 60  HFRPSPETFGN-IEYHFDILAKRLRELSFLNSGVAIRLIDERSGKE-------EVFHYEG 111

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           GLK ++     N+++++         + G     VE A+ W +     I  Y N I   +
Sbjct: 112 GLKAFVDHLNTNKTVLNPVFHFNAEREDGV---GVEVAMQWSDSFNENIFCYTNNIPQRD 168

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GG H +G R ALTR +  Y E      K  IS   DD       I+SV + +P+F+ QTK
Sbjct: 169 GGAHLAGFRAALTRTLNGYIESEGLLKKSKISTAGDDAREGLTAIISVKVPDPKFSSQTK 228

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTA 443
            KLVS + +  VE  +   F  YL++ P EA  ++  +++        R+ +    RK A
Sbjct: 229 DKLVSSEVKTAVEQEMARLFGEYLIEKPNEAKAIVNKMLDAARAREAARKARDMTRRKGA 288

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADC +     +ELF+VEGDSAGGSAK
Sbjct: 289 LDIAGLPGKLADCQEKDPSLSELFLVEGDSAGGSAK 324


>gi|321117344|dbj|BAJ72149.1| gyrase B [Erwinia sp. 'uzenensis']
          Length = 333

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 102/343 (29%), Positives = 172/343 (50%), Gaps = 15/343 (4%)

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
            R+  +  Q +  G+P + L    +  +  GTR+ F P  + F +   F+   L K  + 
Sbjct: 1   RREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRE 59

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            ++L+  V       ++        + + +++ GG+K +++   +N++ I    F   TE
Sbjct: 60  LSFLNSGVSIKLEDKRD-------GKNDHYHYEGGIKAFVEYLNKNKTPIHPNAFYFSTE 112

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350
           K G     VE A+ W +     I  + N I    GGTH +G R A+TR +  Y +     
Sbjct: 113 KDGI---GVEVALQWNDGFQENIYCFTNNIPQRXGGTHLAGFRAAMTRTLNAYMDKEGYS 169

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++
Sbjct: 170 KKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSFEVKLAVEQQMNELLFEYLLE 229

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNR-KTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           +P +A  ++  +I+ +  R    + RE+ R K A+    LPGKLADC +       +++V
Sbjct: 230 HPGDAKIVVGKIIDAARAREAAPRAREMTRCKGALDLAGLPGKLADCQERDPALFXIYLV 289

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           EGD AGG AKQ RN   QA+ PL+GKILNV     +K+  + +
Sbjct: 290 EGDFAGGFAKQGRNXKKQAIPPLKGKILNVEKTRFDKMLASPE 332


>gi|62633142|gb|AAX89530.1| DNA gyrase subunit B [Vibrio tapetis]
          Length = 316

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 99/326 (30%), Positives = 161/326 (49%), Gaps = 14/326 (4%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKF++++Y++SGGLHGVG+SVVNALS ++ +T+ RQ +     +  G P +PL      
Sbjct: 1   GGKFNDNSYKVSGGLHGVGVSVVNALSKQVDLTIHRQGSTHQHTYRHGEPDAPLGATGDT 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
               GT I F P  + F +   F    L K  +  ++L+  V      ++E        +
Sbjct: 61  EK-TGTIIRFWPSEETFTNVH-FHYEILAKRLRELSFLNSGVSIKLIDERE------EDK 112

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
            + F + GG + ++     N++ I  ++F    E++     +VE A+ W +     I  +
Sbjct: 113 MDHFCYEGGTQAFVDYLNTNKTPIIQKVFHFDYERED--GISVEVAMQWNDGYQENIFCF 170

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +G R ALTR +  + +      K   +   DD       I+SV + +
Sbjct: 171 TNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAIVSVKVPD 230

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQ 435
           P+F+ QTK KLVS + +  VE+A+ +    +L++NP EA  +   +I         R+ +
Sbjct: 231 PKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIENPSEAKIVCRKIIDAARARDAARKAR 290

Query: 436 REVNRKTAIRKLRLPGKLADCSQNIA 461
               RK A+    LPGKLADC     
Sbjct: 291 EMTRRKGALDLAGLPGKLADCQXKDP 316


>gi|60678996|gb|AAX33779.1| topoisomerase IV subunit B [Mycoplasma synoviae]
          Length = 160

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 64/154 (41%), Positives = 99/154 (64%), Gaps = 2/154 (1%)

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
               Q      E+F+VEGDSAGG+AK  R++  QA+LPLRGK++NV  +  + +  N++I
Sbjct: 1   TPAQQKNPLQNEIFLVEGDSAGGTAKSGRDKRFQAILPLRGKVVNVEKSRLQDLLKNEEI 60

Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
           + ++  LGC   + +  ++L+Y K+IIMTDAD DGAHI  LLLTFFY+ M +LIEQ  ++
Sbjct: 61  LSIISCLGCGIGNNFNIKNLKYHKIIIMTDADTDGAHIQVLLLTFFYRYMKELIEQGKVY 120

Query: 574 LISPPLFRITQG--TKSVYAHDEEHKQKILEEFK 605
           +   PL++IT     KS +A D+    ++  ++ 
Sbjct: 121 IALAPLYKITAKNSNKSAFAWDDYQLDELRTKYG 154


>gi|213494437|gb|ACJ48957.1| DNA gyrase subunit B [Pseudomonas parafulva]
          Length = 334

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 117/345 (33%), Positives = 181/345 (52%), Gaps = 15/345 (4%)

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
            Q +  G+P +P+E         GT I F+P    F +   F    L K  +  ++L+  
Sbjct: 1   EQTYVHGVPQAPMEIVGD-SETTGTHIHFKPSADTFKNIH-FSWDILAKRIRELSFLNSG 58

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
           V      ++   E       E F + GGL+ +++    N++ ++S++F    +++     
Sbjct: 59  VGILLKDERSGKE-------EFFKYEGGLRAFVEYLNTNKTPVNSQVFHFSVQRED--GV 109

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISI 357
            VE A+ W +     +  + N I   +GGTH  G R +LTR +  Y E      K  +S 
Sbjct: 110 GVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRSLNSYIEQEGLAKKNKVST 169

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD       I+SV + +P+F+ QTK KLVS + +  VE  +   F  +L++NP EA  
Sbjct: 170 TGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNKYFSDFLLENPNEAKA 229

Query: 418 LLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++  +I+ +  R   RK R    RK A+    LPGKLADC +     +EL++VEGDSAGG
Sbjct: 230 VVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGG 289

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
           SAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALG
Sbjct: 290 SAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALG 334


>gi|30793648|gb|AAM52886.1| DNA gyrase subunit beta [Aeromonas bestiarum]
 gi|30793668|gb|AAM52896.1| DNA gyrase subunit beta [Aeromonas salmonicida subsp. masoucida]
 gi|30793672|gb|AAM52898.1| DNA gyrase subunit beta [Aeromonas bestiarum]
 gi|30793680|gb|AAM52902.1| DNA gyrase subunit beta [Aeromonas salmonicida]
 gi|30793730|gb|AAM52927.1| DNA gyrase subunit beta [Aeromonas bestiarum]
 gi|30793744|gb|AAM52934.1| DNA gyrase subunit beta [Aeromonas bestiarum]
 gi|37931125|gb|AAP69923.1| DNA gyrase subunit beta [Aeromonas sp. 117P]
 gi|37931127|gb|AAP69924.1| DNA gyrase subunit beta [Aeromonas sp. 116P]
 gi|37931131|gb|AAP69926.1| DNA gyrase subunit beta [Aeromonas sp. 119P]
 gi|37931135|gb|AAP69928.1| DNA gyrase subunit beta [Aeromonas sp. 156]
 gi|37931137|gb|AAP69929.1| DNA gyrase subunit beta [Aeromonas sp. A99]
 gi|37931141|gb|AAP69931.1| DNA gyrase subunit beta [Aeromonas sp. 130]
          Length = 321

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 115/332 (34%), Positives = 177/332 (53%), Gaps = 15/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++     +  GT + F P P IF D   +    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTL-YHYEILAKRLREL 59

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 60  SFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQ 112

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 113 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSK 169

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 170 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLEN 229

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 230 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 289

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 321


>gi|159576570|dbj|BAF92833.1| DNA gyrase subunit B [Halomonas subglaciescola]
          Length = 324

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 114/336 (33%), Positives = 173/336 (51%), Gaps = 16/336 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG+SVVNALS+EL +T+ RQ  +F Q ++ G+P +PL          GT++
Sbjct: 1   YKVCGGLHGVGVSVVNALSEELRLTIWRQGELFEQIYNHGVPKAPLGVVGTTEK-SGTQV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            FRP  +       F    L K  +  ++L+  V      ++   E       E F++ G
Sbjct: 60  HFRPSVET-STSIEFHYDILAKRLRELSFLNSGVAIRLMDERSGKE-------ELFHYEG 111

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           GLK +++    N++ ++         + GT    VE A+ WC+     I  Y N I   +
Sbjct: 112 GLKAFVEYLNTNKTTLNPVFHFTSAREDGT---EVEVAMQWCDTFTESIFCYTNNIPQRD 168

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GG H +G R +LTR +  Y E      K  +S   DD       I+SV + +P+F+ QTK
Sbjct: 169 GGAHLAGFRASLTRTLNHYIETQGLLKKAKVSTAGDDAREGLTAIVSVKVPDPKFSSQTK 228

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTA 443
            KLVS + +  VE  +   F  YL++ P EA  ++  +++        R+ +    RK A
Sbjct: 229 EKLVSSEVKTAVEQEMGRLFSDYLIEKPNEAKAIVGKMLDAARAREAARKARDMTRRKGA 288

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           +    LPGKLADC +     +EL++VEGDSAGGSAK
Sbjct: 289 LDIAGLPGKLADCQEKDPSLSELYLVEGDSAGGSAK 324


>gi|321117354|dbj|BAJ72154.1| gyrase B [Erwinia sp. 'uzenensis']
          Length = 333

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 101/343 (29%), Positives = 173/343 (50%), Gaps = 15/343 (4%)

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
            R+  +  Q +  G+P + L    +  +  GTR+ F P  + F +   F+   L K  + 
Sbjct: 1   RREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRE 59

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            ++L+  V       ++        + + +++ GG+K +++   +N++ I    F   TE
Sbjct: 60  LSFLNSGVSIKLEDKRD-------GKNDHYHYEGGIKAFVEYLNKNKTPIHPNAFYFSTE 112

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350
           K G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +     
Sbjct: 113 KDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYS 169

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++
Sbjct: 170 KKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSFEXKSAVEQQMNELLFEYLLE 229

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNR-KTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           +P +A  ++  +I+ +  R    +  E+ R K A+    LPGKLADC +       +++V
Sbjct: 230 HPGDAKIVVGKIIDAARAREAAPRAXEMTRCKGALDLAGLPGKLADCQERDPALFXIYLV 289

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           EGD AGG AKQ RNR  QA+ P++GKILNV     +K+  + +
Sbjct: 290 EGDFAGGFAKQGRNRKXQAIPPVKGKILNVEKTRFDKMLASPE 332


>gi|208973050|dbj|BAG74368.1| DNA gyrase B [Paenibacillus lautus]
          Length = 298

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 89/285 (31%), Positives = 147/285 (51%), Gaps = 14/285 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG+SVVNALS ++ V V R   I+ Q++ RG+P   ++      +  G
Sbjct: 1   GGGYKVSGGLHGVGVSVVNALSSKVVVQVKRDGHIYQQEYHRGVPQYDIKVIGD-SDDTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF PDP+IF +   +D   LL   +  A+L+  +    + ++           + F 
Sbjct: 60  TTVTFLPDPEIFTETTEYDYNTLLTRIRELAFLNKGIALTLTDER-------TGASDYFK 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  Y++   E +  +  +    +  +       VE ++ + +     I S+ N I 
Sbjct: 113 YEGGIIEYVKFLNEKKEALHEDPIYVEGSRDNIQ---VEVSLQYNDSYTENIYSFANNIN 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHESG + ALTR I  YA  T   +    ++  DD+      I+SV + EP+F G
Sbjct: 170 THEGGTHESGFKSALTRIINDYARKTGLIKDNTNNLSGDDVREGLTAIISVKVPEPQFEG 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
           QTKTKL + + +  VE+   +    +L +NP  + ++LE  ++ S
Sbjct: 230 QTKTKLGNSEVRGIVESLFAEKLQEFLQENPSVSRRILEKALQAS 274


>gi|164456743|dbj|BAF97864.1| gyrase B subunit [Vibrio xuii]
          Length = 278

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 87/288 (30%), Positives = 150/288 (52%), Gaps = 13/288 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K GT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTM 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F P  + F +   F    L K  +  ++L+  V    S ++E        + + F + 
Sbjct: 60  IRFWPSAETFSN-TEFHYDILAKRLRELSFLNSGVSIKLSDERE------EDKNDHFMYE 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG++ +++    N++ I  ++F   +E++     +VE A+ W +     I  + N I   
Sbjct: 113 GGIQAFVEHLNTNKTPIHEKVFHFNSERED--GISVEVAMQWNDGFQENIYCFTNNIPQR 170

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QT
Sbjct: 171 DGGTHLAGFRSALTRTLNTFMDKEGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQT 230

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           K KLVS + +  VE+A+ +    YLV++P EA  +   +I+ +  R  
Sbjct: 231 KDKLVSSEVKSAVESAMGEKLSEYLVEHPNEAKTVCSKIIDAARAREA 278


>gi|210078015|emb|CAR94875.1| DNA gyrase B subunit [Ochrobactrum rhizosphaerae]
          Length = 341

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 110/349 (31%), Positives = 183/349 (52%), Gaps = 12/349 (3%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L + + R   I    F+ G+  SPL    +  +  GT ++F P    F     FD   L 
Sbjct: 1   LKLKIRRAGKIHEMSFTHGVADSPLVVTGEAGSDTGTEVSFLPSTDTFT-MVEFDYDTLE 59

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           +  +  A+L+  V+   +  +    +  +      ++ GG+  +++   + +  +  E  
Sbjct: 60  RRLRELAFLNSGVRINLADRRHADIREQV-----LHYDGGVVEFVKYIDKGKKALLEEPI 114

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
             ++EK G    TVE A+ W +    ++  + N I   +GGTH +G R ALTR +  YA+
Sbjct: 115 YIRSEKDG---MTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRGALTRQVTGYAD 171

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
            +    K  + +  DD       +LSV + +P+F+ QTK KLVS + ++ VE+ + +   
Sbjct: 172 SSGLTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRQVVESLVNEALS 231

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTE 465
            +L ++P     ++E VI+ +  R   RK R++ RK+ +    LPGKLADC +     +E
Sbjct: 232 TWLEEHPSGGKTIVEKVIQAAAAREAARKARDITRKSNLSVTSLPGKLADCQERDPAKSE 291

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           +FIVEGDSAGGSAK  R+R NQA+LPLRGKILNV     +++ ++ Q+ 
Sbjct: 292 IFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQVG 340


>gi|37931123|gb|AAP69922.1| DNA gyrase subunit beta [Aeromonas sp. 40]
          Length = 321

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 115/332 (34%), Positives = 176/332 (53%), Gaps = 15/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++     +  GT + F P P IF D   +    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTL-YHYEILAKRLREL 59

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 60  SFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQ 112

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 113 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSK 169

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 170 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLEN 229

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P  A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 230 PGVAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 289

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 321


>gi|323364327|gb|ADX42733.1| DNA gyrase subunit B [Bacillus ginsengi]
          Length = 315

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 107/324 (33%), Positives = 167/324 (51%), Gaps = 13/324 (4%)

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           F RG     L+         G+ + F+ DP+IF +   ++   L    Q  AYL+  ++ 
Sbjct: 1   FERGQISDELKVIGDSEE-TGSEVRFKADPEIFTETTVYEYDILAHRLQELAYLNRGIRI 59

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303
             S ++   E+      + +++ GG+K+Y+Q   E++  I  E    + EK G     VE
Sbjct: 60  TLSDERGEEERS-----DSYHYEGGIKSYVQHINEDKEPIHEEPIFIEGEKDGI---AVE 111

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISD 360
            A+ +       I S+ N I T EGGTHESG + ALTR I  YA      +    ++  +
Sbjct: 112 VAMQYNAGYASNIFSFANNINTYEGGTHESGFKTALTRVINDYARKNGLLKDNDANLSGE 171

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D       I+S+   +P+F GQTKTKL + +  + V +   +  + +L++NP  A  +++
Sbjct: 172 DAREGLTAIISIKHPDPQFEGQTKTKLGNSEVSQIVNSLFSEGLERFLMENPTGARMIVD 231

Query: 421 W-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
             ++        ++ +    RK+ +    LPGKL+DCS      +EL+IVEGDSAGGSAK
Sbjct: 232 KGLMAARARVAAKKARELTRRKSVLEISNLPGKLSDCSSRDPAISELYIVEGDSAGGSAK 291

Query: 480 QARNRSNQAVLPLRGKILNVASAG 503
             R+R  QA+LPLRGKILNV  A 
Sbjct: 292 NGRDRHFQAILPLRGKILNVEKAH 315


>gi|322875016|gb|ADX20831.1| DNA gyrase subunit B [Legionella anisa]
          Length = 208

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 122/220 (55%), Gaps = 14/220 (6%)

Query: 113 GRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVT 172
           GRGIPV+ H K   +S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+ELH+T
Sbjct: 1   GRGIPVDIH-KEEGRSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLT 59

Query: 173 VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQ 232
           V R   I  Q +  G+P +P+ +        GT+I F+P  + F +   F    L K  +
Sbjct: 60  VRRHGKIHEQHYRNGVPDAPMAETGDAP-TTGTQIWFKPSAETFSN-IEFHYDILAKRLR 117

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             +YL+  V      ++          ++ F++ GG+  +++   +N+++I   +F+   
Sbjct: 118 ELSYLNSGVCIHLFDERSQ-------RQDTFHYEGGITAFVEHLNKNKNVIIPTVFSMTA 170

Query: 293 EKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHE 331
           EK       VE ++ W +   E    + N I   +GGTH 
Sbjct: 171 EKDNI---VVELSMQWNDSYQETLYCFTNNIPQRDGGTHM 207


>gi|308153096|dbj|BAJ22137.1| DNA gyrase subunit B [Streptomyces sulfonofaciens]
          Length = 326

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 93/316 (29%), Positives = 160/316 (50%), Gaps = 18/316 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS ++ V + R    ++Q +  G+P + L++ E   ++ G
Sbjct: 1   GGGYAVSGGLHGVGVSVVNALSTKVSVEIKRDGYRWTQDYKLGVPTAALQRNEPT-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE-------------I 251
           T +TF  DP IF     +    L +  Q  A+L+  ++   + ++E             +
Sbjct: 60  TTVTFWADPDIFET-TDYSFETLSRRFQEMAFLNKGLRIALTDERESAKATSGADAGEAV 118

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
            E    P    +Y+ GG+  +++     +  +  +       +      +VE A+ W   
Sbjct: 119 DETVAEPRSVTYYYEGGIVDFVKYLNSRKGDVVHDTVIDIDAEDRERMLSVEVAMQWNSG 178

Query: 312 NPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVG 368
             E + S+ NTI T EGGTHE G R ALT  I +YA   +   ++  ++  DD+      
Sbjct: 179 YSEGVYSFANTIHTHEGGTHEEGFRAALTGLINRYARDKKLLREKDDNLTGDDIREGLTA 238

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           I+SV + EP+F GQTKTKL + +A+  V+  + +    +L +NP EA +++   I+ +  
Sbjct: 239 IISVKLGEPQFEGQTKTKLGNTEAKTFVQKVVHEHLSDWLDRNPNEAAEIIRKGIQAATA 298

Query: 429 RLRRRKQREVNRKTAI 444
           R+  RK R++ R+  +
Sbjct: 299 RVAARKARDLTRRKGL 314


>gi|164456679|dbj|BAF97832.1| gyrase B subunit [Vibrio hepatarius]
          Length = 279

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 88/288 (30%), Positives = 148/288 (51%), Gaps = 13/288 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K GT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKVTLTIHRGGHIHTQTYHHGEPQAPLAVVGDT-DKTGTQ 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F P  + F +   F    L K  +  ++L+  V      ++E        + + F F 
Sbjct: 60  IRFWPSAETFSN-TEFHYDILAKRLRELSFLNSGVSIKLKDERE------EDKSDHFMFE 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG++ ++     N++ I  +IF    E++     +VE A+ W +     I  + N I   
Sbjct: 113 GGIQAFVDHLNTNKTPIIEKIFHFDFERED--GISVEVAMQWNDGFQENIYCFTNNIPQR 170

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QT
Sbjct: 171 DGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQT 230

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           K KLVS + +  VE+A+ +    +LV+NP EA  +   +I+ +  R  
Sbjct: 231 KDKLVSSEVKSAVESAMGEKLSEFLVENPTEAKMVCSKIIDAARAREA 278


>gi|261362390|gb|ACX71596.1| DNA gyrase subunit B [Pseudomonas cremoricolorata]
          Length = 333

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 112/344 (32%), Positives = 179/344 (52%), Gaps = 15/344 (4%)

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
                I+ Q +  G+P +P+    +     GT I F+P  + F +   F    L K  + 
Sbjct: 1   RHNGWIWEQTYVHGVPQAPMAIVGE-SETTGTHIHFKPSAETFKNIH-FSWDILAKRIRE 58

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            ++L+  V      ++   E       E F + GGL+ +++    N++ +++++F    +
Sbjct: 59  LSFLNSGVGILLKDERSGKE-------EFFKYEGGLRAFVEYLNTNKTPVNAQVFHFSVQ 111

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350
           ++      VE A+ W +     +  + N I   +GGTH  G R +LTR +  Y E     
Sbjct: 112 RED--GVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRSLNSYIEQEGLA 169

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            K  +S   DD       I+SV + +P+F+ QTK KLVS + +  VE  +   F  +L++
Sbjct: 170 KKNKVSTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNKYFSDFLLE 229

Query: 411 NPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           NP EA  ++  +I+ +  R   RK R    RK A+    LPGKLADC +     +EL++V
Sbjct: 230 NPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYLV 289

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           EGDSAGGSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++
Sbjct: 290 EGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 333


>gi|255553520|ref|XP_002517801.1| DNA topoisomerase II, putative [Ricinus communis]
 gi|223543073|gb|EEF44608.1| DNA topoisomerase II, putative [Ricinus communis]
          Length = 197

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 72/187 (38%), Gaps = 29/187 (15%)

Query: 20  SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGG----------- 68
             +  ++  +  S     ++  + Y   S      LE + +RP  YIG            
Sbjct: 1   MAETAQTVPLMTSNNANKKTIEETYQKKS-----QLEHILLRPDTYIGSIEKHTQTLWVY 55

Query: 69  ----------TDEKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLD-GNGFLTVVDNGRGI 116
                     T    L+ +F E++ NA D        + ++V +D  N  ++V +NG G+
Sbjct: 56  EDEKMVNRNVTYVPGLYKIFDEILVNAADNKQRDPTMDALKVVIDVENNMISVYNNGDGV 115

Query: 117 PVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQ 176
           PVE H K       E+I   L     +D++  + +GG +G G  + N  S E  +  A  
Sbjct: 116 PVEIH-KEEGVYVPELIFGHLLTSSNYDDTVKKTTGGRNGYGAKLTNIFSTEFVIETADG 174

Query: 177 NTIFSQK 183
                 K
Sbjct: 175 KRQKKYK 181


>gi|322875018|gb|ADX20832.1| DNA gyrase subunit B [Fluoribacter bozemanae]
          Length = 208

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 121/220 (55%), Gaps = 14/220 (6%)

Query: 113 GRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVT 172
           GRGIPV+ H K   +S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+ELH+T
Sbjct: 1   GRGIPVDIH-KEEGRSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLT 59

Query: 173 VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQ 232
           V R   I  Q +  G+P +P+ +        GT+I F+P  + F +   F    L K  +
Sbjct: 60  VRRHGKIHEQHYRNGVPDAPMAETGDAS-TTGTQIWFKPSAETFSN-IEFHYDILAKRLR 117

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             +YL+  V      ++          ++ F++ GG+  +++   +N++ I   +F+   
Sbjct: 118 ELSYLNSGVCIHLFDERSQ-------RQDTFHYEGGITAFVEHLNKNKNTIMPTVFSMTA 170

Query: 293 EKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHE 331
           EK       VE ++ W +   E    + N I   +GGTH 
Sbjct: 171 EKDNI---VVELSMQWNDSYQETLYCFTNNIPQRDGGTHM 207


>gi|223983501|ref|ZP_03633687.1| hypothetical protein HOLDEFILI_00968 [Holdemania filiformis DSM
           12042]
 gi|223964673|gb|EEF68999.1| hypothetical protein HOLDEFILI_00968 [Holdemania filiformis DSM
           12042]
          Length = 97

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 8/104 (7%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G +  YA+ ++   K   E       ++ I R+KGLGEM   QL ET MD   RTL+
Sbjct: 1   IQKGQQVRYAYSDDELNKAKGEMGD----RLNIQRYKGLGEMNPEQLWETTMDPEVRTLI 56

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +    D     + LMG + + R  FIQE A F+ ++ 
Sbjct: 57  QVTIEDAM----DADAVFSMLMGDEVEPRRNFIQENAHFVKNLD 96


>gi|37931151|gb|AAP69936.1| DNA gyrase subunit beta [Aeromonas sp. 26]
          Length = 321

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 115/332 (34%), Positives = 177/332 (53%), Gaps = 15/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P++PL++     +  GT + F P P IF D   +    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPVAPLKQIGDSSSGTGTEVRFWPSPTIFTDTL-YHYEILAKRLREL 59

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 60  SFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQ 112

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 113 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSK 169

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS +    VE A+ +    +L++N
Sbjct: 170 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVNTAVEQAMGEKLGEFLLEN 229

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 230 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 289

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 321


>gi|164456617|dbj|BAF97801.1| gyrase B subunit [Photobacterium iliopiscarium]
          Length = 279

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 85/288 (29%), Positives = 155/288 (53%), Gaps = 12/288 (4%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS+++ +T+ R   I+ Q +  G+P +PL +     +K GT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSEKVELTINRNGHIYQQTYCNGVPQAPLAEVGD-SDKTGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           R+ F P  + F     F    L K  +  ++L+  +      ++E        +++ F +
Sbjct: 60  RLRFWPSEETFTTNLEFHYEILAKRLRELSFLNSGISIRLIDERE------EGKQDHFTY 113

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG++ +++    N++ I  ++F   +E++     TVE A+ W +     +  + N I  
Sbjct: 114 EGGIRAFVEHLNRNKTPIHQKVFHFDSERED--GITVEVAMQWNDGFQEGVYCFTNNIPQ 171

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTR +  + +      K   +   DD     V ++SV + +P+F+ Q
Sbjct: 172 RDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLVAVVSVKVPDPKFSSQ 231

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           TK KLVS + +  VE+A+ + F  +L+++P +A  +   +I+ S  R 
Sbjct: 232 TKDKLVSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRARE 279


>gi|30793702|gb|AAM52913.1| DNA gyrase subunit beta [Aeromonas popoffii]
 gi|30793706|gb|AAM52915.1| DNA gyrase subunit beta [Aeromonas popoffii]
          Length = 321

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 114/332 (34%), Positives = 176/332 (53%), Gaps = 15/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++     +  GT + F P P IF D   +    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTL-YHYEILAKRLREL 59

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F    E+
Sbjct: 60  SFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSIEQ 112

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 113 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSK 169

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 170 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLEN 229

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 230 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 289

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 321


>gi|164456687|dbj|BAF97836.1| gyrase B subunit [Vibrio lentus]
          Length = 280

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 87/290 (30%), Positives = 146/290 (50%), Gaps = 13/290 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +  G P +PL       +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I F P  + F +   F    L K  +  ++L+  V       +E        + + F 
Sbjct: 60  TEIRFWPSEETFTN-IEFHYDILAKRLRELSFLNSGVSIKLIDKRE------EDKMDHFE 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG++ +++    N++ I  +IF   +E+      TVE A+ W +     I  + N I 
Sbjct: 113 YEGGIQAFVEHLNTNKTPIIQKIFHFDSERDD--GITVEVAMQWNDGYQENIYCFTNNIP 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GG H +G R ALTR +  + +      K   S   DD       I+SV + +P+F+ 
Sbjct: 171 QRDGGAHLAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSS 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           QTK KLVS + +  VE+ + +    +L++NP EA  +   +I+ +  R  
Sbjct: 231 QTKDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDA 280


>gi|297595838|gb|ADI48228.1| DNA gyrase B [Erwinia sp. CECT 5264]
          Length = 307

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 97/318 (30%), Positives = 162/318 (50%), Gaps = 15/318 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS++L +T+ R+  +  Q +  G+P +PL    +  +  GTR+ F 
Sbjct: 1   SGGLHGVGVSVVNALSEKLELTIRREGKVHQQIYVHGVPQAPLSVTGET-DITGTRVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F+   L K  +  ++L+  V       ++        + + +++ GG+K
Sbjct: 60  PSHETFTNVTDFEYEILAKRLRELSFLNSGVSIKLEDKRD-------GKNDHYHYEGGIK 112

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I   +F   TEK G     VE A+ W +     I  + N I   +GGT
Sbjct: 113 AFVEYLNKNKTPIHPNVFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGT 169

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KL
Sbjct: 170 HLVGFRTAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKL 229

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRK 446
           VS + +  VE  + +    YL++NP +A  ++  +I+        RR +    RK A+  
Sbjct: 230 VSSEVKSAVEQQMNELLAEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDL 289

Query: 447 LRLPGKLADCSQNIAHGT 464
             LPGKLADC +     +
Sbjct: 290 AGLPGKLADCQERDPAMS 307


>gi|213494445|gb|ACJ48961.1| DNA gyrase subunit B [Pseudomonas sp. BCRC 17752]
          Length = 334

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 114/345 (33%), Positives = 182/345 (52%), Gaps = 15/345 (4%)

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
            Q +  G+P +P+    +     GT I F+P  + F +   F    L K  +  ++L+  
Sbjct: 1   EQTYVHGVPQAPMAVVGE-SETTGTHIHFKPSAETFKNIH-FSWDILAKRIRELSFLNSG 58

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
           V      ++         ++E F + GGL+ +++    N++ ++S++F    ++      
Sbjct: 59  VGILLKDER-------TGKEEFFKYEGGLRAFVEYLNTNKTPVNSQVFHFNVQRDD--GV 109

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISI 357
            VE A+ W +     +  + N I   +GGTH  G R +LTR +  Y E      K  ++ 
Sbjct: 110 GVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRSLNNYIEQEGLAKKNKVAT 169

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD       I+SV + +P+F+ QTK KLVS + +  VE  +   F  +L++NP EA  
Sbjct: 170 TGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNKYFADFLLENPNEAKA 229

Query: 418 LLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++  +I+ +  R   RK R    RK A+    LPGKLADC +     +EL++VEGDSAGG
Sbjct: 230 VVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGG 289

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
           SAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALG
Sbjct: 290 SAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALG 334


>gi|213494431|gb|ACJ48954.1| DNA gyrase subunit B [Pseudomonas putida]
          Length = 334

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 115/345 (33%), Positives = 182/345 (52%), Gaps = 15/345 (4%)

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
            Q +  G+P +P+    +     GT I F+P  + F +   F    L K  +  ++L+  
Sbjct: 1   EQTYVHGVPQAPMAVVGE-SETTGTHIHFKPSAETFKNIH-FSWDILAKRIRELSFLNSG 58

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
           V      ++   E       E F + GGL+ +++    N++ ++S++F    +++     
Sbjct: 59  VGILLKDERSGKE-------EFFKYEGGLRAFVEYLNTNKTPVNSQVFHFSVQRED--GV 109

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISI 357
            VE A+ W +     +  + N I   +GGTH  G R +LTR +  Y E      K  ++ 
Sbjct: 110 GVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRSLNSYIEQEGLAKKNKVAT 169

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD       I+SV + +P+F+ QTK KLVS + +  VE  +   F  +L++NP EA  
Sbjct: 170 TGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNKYFSDFLLENPNEAKA 229

Query: 418 LLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++  +I+ +  R   RK R    RK A+    LPGKLADC +     +EL++VEGDSAGG
Sbjct: 230 VVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGG 289

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
           SAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALG
Sbjct: 290 SAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALG 334


>gi|62084142|dbj|BAD91452.1| DNA gyrase subunit B [Streptococcus parauberis]
 gi|110224998|dbj|BAE97488.1| DNA gyrase subunit B [Streptococcus parauberis]
          Length = 300

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 98/302 (32%), Positives = 156/302 (51%), Gaps = 12/302 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS +L V V +  +I  Q+F RGI    L+   +  +  G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSSQLDVRVFKNGSIHYQEFKRGIVYDDLKIIGET-DLTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PDP+IF +   FD  +L K  Q  A+L+  ++   +  +   E     + ++++
Sbjct: 60  TTVHFTPDPEIFTETVEFDFEKLAKRVQELAFLNRGLRISIADKRNGIE-----QVKDYH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+ +Y++   E + +I         E  G     VE A+ +     E   S+ N I 
Sbjct: 115 YEGGIASYVEFLNEKKDVIIEHPIFTDGEMDGI---AVEVAMQYTTGYHENVMSFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G R ALTR I  YA+  +   +   ++  +D+      ++SV    P+F G
Sbjct: 172 THEGGTHEQGFRTALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + +  +       D    +L++NP  A K+++  I  S+ R+  ++ REV RK
Sbjct: 232 QTKTKLGNSEVVKITNRLFSDALQRFLLENPQVARKIVDKGILASKARIAAKRAREVTRK 291

Query: 442 TA 443
            +
Sbjct: 292 KS 293


>gi|215271422|emb|CAR48200.1| gyrase B subunit [Vibrio rotiferianus]
 gi|215271424|emb|CAR48201.1| gyrase B subunit [Vibrio rotiferianus]
 gi|215271426|emb|CAR48202.1| gyrase B subunit [Vibrio rotiferianus]
 gi|215271428|emb|CAR48203.1| gyrase B subunit [Vibrio rotiferianus]
          Length = 336

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 116/346 (33%), Positives = 180/346 (52%), Gaps = 14/346 (4%)

Query: 167 DELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAAR 226
           +++ +T+ R   I +Q +  G P +PL        + GT+I F P  + F +   F    
Sbjct: 1   EKVVLTIHRGGHIHTQTYHHGEPQAPLAVVGDT-EQTGTQIRFWPSAETFTNI-EFHYDI 58

Query: 227 LLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSE 286
           L K  +  ++L+  V      ++E        + + F F GG++ +++    N++ I  +
Sbjct: 59  LAKRLRELSFLNSGVSIKLVDEREAD------KSDHFMFEGGIQAFVEHLNTNKTPIIEK 112

Query: 287 IFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY 345
           IF    E++      VE A+ W +     I  + N I   +GGTH +G R ALTR +  +
Sbjct: 113 IFHFDFERED--GIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNTF 170

Query: 346 AELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDP 403
            +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE+A+ + 
Sbjct: 171 MDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEK 230

Query: 404 FDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAH 462
              +L++NP EA  +   +I+ +  R   RK R    RK A+    LPGKLADC +    
Sbjct: 231 LSEFLIENPTEAKMVCTKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPA 290

Query: 463 GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
             EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ 
Sbjct: 291 LFELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 336


>gi|213494435|gb|ACJ48956.1| DNA gyrase subunit B [Pseudomonas fulva]
          Length = 334

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 115/345 (33%), Positives = 182/345 (52%), Gaps = 15/345 (4%)

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
            Q +  G+P +P+    +     GT I F+P  + F +   F    L K  +  ++L+  
Sbjct: 1   EQTYVHGVPQAPMAIVGE-SETTGTHIHFKPSAETFKNIH-FSWDILAKRIRELSFLNSG 58

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
           V      ++   E       E F + GGL+ +++    N++ +++++F    +++     
Sbjct: 59  VGILLKDERSGKE-------EFFKYEGGLRAFVEYLNTNKTPVNAQVFHFSVQRED--GV 109

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISI 357
            VE A+ W +     +  + N I   +GGTH  G R +LTR +  Y E      K  +S 
Sbjct: 110 GVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRSLNSYIEQEGLAKKNKVST 169

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD       I+SV + +P+F+ QTK KLVS + +  VE  +   F  +L++NP EA  
Sbjct: 170 TGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNKYFSDFLLENPNEAKA 229

Query: 418 LLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++  +I+ +  R   RK R    RK A+    LPGKLADC +     +EL++VEGDSAGG
Sbjct: 230 VVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGG 289

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
           SAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALG
Sbjct: 290 SAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALG 334


>gi|321117346|dbj|BAJ72150.1| gyrase B [Erwinia sp. 'uzenensis']
          Length = 333

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 102/343 (29%), Positives = 173/343 (50%), Gaps = 15/343 (4%)

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
            R+  +  Q +  G+P + L    +  +  GTR+ F P  + F +   F+   L K  + 
Sbjct: 1   RREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRE 59

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            ++L+  V       ++        + + +++ GG+K +++   +N++ I    F   TE
Sbjct: 60  LSFLNSGVSIKLEDKRD-------GKNDHYHYEGGIKAFVEYLNKNKTPIHPNAFYFSTE 112

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350
           K G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +     
Sbjct: 113 KDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGFS 169

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++
Sbjct: 170 KKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSFEVKSAVEQQMNELLFEYLLE 229

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNR-KTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           +P +A  ++  +I+ +  R    + RE+ R K A+    LPGKLADC +       ++ V
Sbjct: 230 HPGDAKIVVGKIIDAARAREAAPRAREMTRCKGALDLAGLPGKLADCQERDPALFXIYXV 289

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           EGD AGG AKQ RNR  QA+ P++GKILNV     +K+  + +
Sbjct: 290 EGDFAGGFAKQGRNRKXQAIPPVKGKILNVEKTRFDKMLASPE 332


>gi|213494443|gb|ACJ48960.1| DNA gyrase subunit B [Pseudomonas monteilii]
          Length = 334

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 115/345 (33%), Positives = 180/345 (52%), Gaps = 15/345 (4%)

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
            Q +  G+P +P+          GT I F+P  + F +   F    L K  +  ++L+  
Sbjct: 1   EQTYVHGVPQAPMAVVGD-SETTGTHIHFKPSAETFKNIH-FSWDILAKRIRELSFLNSG 58

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
           V      ++   E       E F + GGL+ +++    N++ ++S++F    ++      
Sbjct: 59  VGILLKDERSGKE-------EFFKYEGGLRAFVEYLNTNKTPVNSQVFHFNVQRDD--GV 109

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISI 357
            VE A+ W +     +  + N I   +GGTH  G R +LTR +  Y E      K  ++ 
Sbjct: 110 GVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRSLNSYIEQEGLAKKNKVAT 169

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD       I+SV + +P+F+ QTK KLVS + +  VE  +   F  +L++NP EA  
Sbjct: 170 TGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNKYFADFLLENPNEAKA 229

Query: 418 LLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++  +I+ +  R   RK R    RK A+    LPGKLADC +     +EL++VEGDSAGG
Sbjct: 230 VVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGG 289

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
           SAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALG
Sbjct: 290 SAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALG 334


>gi|213494441|gb|ACJ48959.1| DNA gyrase subunit B [Pseudomonas mosselii]
          Length = 334

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 115/345 (33%), Positives = 181/345 (52%), Gaps = 15/345 (4%)

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
            Q +  G+P +P+    +     GT I F+P  + F +   F    L K  +  ++L+  
Sbjct: 1   EQTYVHGVPQAPMAVVGE-SETTGTHIHFKPSAETFKNIH-FSWDILAKRIRELSFLNSG 58

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
           V      ++   E       E F + GGL+ +++    N++ ++S++F    ++      
Sbjct: 59  VGILLKDERSGKE-------EFFKYEGGLRAFVEYLNTNKTPVNSQVFHFNVQRDD--GV 109

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISI 357
            VE A+ W +     +  + N I   +GGTH  G R +LTR +  Y E      K  ++ 
Sbjct: 110 GVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRSLNSYIEQEGLAKKNKVAT 169

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD       I+SV + +P+F+ QTK KLVS + +  VE  +   F  +L++NP EA  
Sbjct: 170 TGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNKYFADFLLENPNEAKA 229

Query: 418 LLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++  +I+ +  R   RK R    RK A+    LPGKLADC +     +EL++VEGDSAGG
Sbjct: 230 VVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGG 289

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
           SAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALG
Sbjct: 290 SAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALG 334


>gi|57868970|gb|AAW57478.1| gyrase B [Serratia symbiotica]
          Length = 307

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 96/315 (30%), Positives = 157/315 (49%), Gaps = 15/315 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS++L + + R+  +  Q +  G P +PL+   +  ++ GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYGHGEPQAPLKVVGET-DQTGTMVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F+   L K  +  ++L+  V       +   E       + F++ GG+K
Sbjct: 60  PSYQTFTNVTEFEYDILAKRLRELSFLNSGVSIRLKDKRTDRE-------DHFHYEGGIK 112

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I   +F   T K       VE A+ W +     I  + N I   +GGT
Sbjct: 113 AFVEYLNKNKTPIHPNVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGT 169

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R A+TR +  Y E      K  IS   DD     + ++SV + +P+F+ QTK KL
Sbjct: 170 HLVGFRTAMTRTLNSYMEKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKL 229

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRK 446
           VS + +  VE  + +    YL++NP +A   +  +I+        R+ +    RK A+  
Sbjct: 230 VSSEVKTAVETLMNEKLVDYLMENPTDAKXCVGKIIDAARAREAARKAREMTRRKGALDL 289

Query: 447 LRLPGKLADCSQNIA 461
           + LPGKLADC +   
Sbjct: 290 VGLPGKLADCQERDP 304


>gi|209863363|gb|ACI88781.1| DNA gyrase subunit B [Aeromonas sp. JH70]
          Length = 334

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 119/346 (34%), Positives = 184/346 (53%), Gaps = 16/346 (4%)

Query: 188 IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247
            P +PL++        GT + F P P IF D   +    L K  +  ++L+  V      
Sbjct: 1   EPQAPLKQIGDSTG-TGTEVRFWPSPTIFTDTL-YHYEILAKRLRELSFLNSGVSIRLQD 58

Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307
           +++  E         F + GG+K +++   +N++ I  ++F   TE+ G     VE A+ 
Sbjct: 59  ERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQ 108

Query: 308 WCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMI 364
           W +     +  + N I   +GGTH  G R ALTR +  Y +      K   +   DD+  
Sbjct: 109 WNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAKSAASGDDVRE 168

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
             + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++NP +A  ++  +I+
Sbjct: 169 GLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIID 228

Query: 425 RSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483
            +  R   RK RE   RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RN
Sbjct: 229 AARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRN 288

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           R NQA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC       
Sbjct: 289 RKNQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGRDEY 334


>gi|164456765|dbj|BAF97875.1| gyrase B subunit [Vibrio harveyi]
          Length = 278

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 87/288 (30%), Positives = 152/288 (52%), Gaps = 13/288 (4%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       ++
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQ 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT+I F P  + F +   F    L K  +  ++L+  V      ++E        + + 
Sbjct: 60  TGTQIRFWPSAETFSN-TEFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KSDH 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           F F GG++ +++    N++ I  +IF    E++     +VE A+ W +     I  + N 
Sbjct: 113 FMFEGGIQAFVEHLNTNKTPIIEKIFHFDFERED--GISVEVAMQWNDGFQENIYCFTNN 170

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F
Sbjct: 171 IPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKF 230

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
           + QTK KLVS + +  VE+A+ +    +L++NP EA  +   +I+ + 
Sbjct: 231 SSQTKDKLVSSEVKSAVESAMGEKLSEFLIENPAEAKMVCSKIIDAAR 278


>gi|110084508|gb|ABG49411.1| DNA gyrase subunit beta [Aeromonas media]
          Length = 327

 Score =  158 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 116/339 (34%), Positives = 180/339 (53%), Gaps = 16/339 (4%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   +    L K 
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFTDTL-YHYEILAKR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F  
Sbjct: 59  LRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHF 111

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +  
Sbjct: 112 TTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKE 168

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +
Sbjct: 169 DYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADF 228

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
           L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL
Sbjct: 229 LLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSEL 288

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
           +IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +
Sbjct: 289 YIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 327


>gi|213494429|gb|ACJ48953.1| DNA gyrase subunit B [Pseudomonas taiwanensis]
          Length = 334

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 116/345 (33%), Positives = 181/345 (52%), Gaps = 15/345 (4%)

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
            Q +  G+P +P+    +     GT I F+P  + F +   F    L K  +  ++L+  
Sbjct: 1   EQTYVHGVPQAPMAVVGE-SESTGTHIHFKPSAETFKNIH-FSWDILAKRIRELSFLNSG 58

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
           V      ++   E       E F + GGL+ +++    N++ I+S++F    ++      
Sbjct: 59  VGILLKDERSGKE-------EFFKYEGGLRAFVEYLNTNKTPINSQVFHFNVQRDD--GV 109

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISI 357
            VE A+ W +     +  + N I   +GGTH  G R +LTR +  Y E      K  ++ 
Sbjct: 110 GVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRSLNSYIEQEGLAKKNKVAT 169

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD       I+SV + +P+F+ QTK KLVS + +  VE  +   F  +L++NP EA  
Sbjct: 170 TGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNKYFADFLLENPNEAKA 229

Query: 418 LLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++  +I+ +  R   RK R    RK A+    LPGKLADC +     +EL++VEGDSAGG
Sbjct: 230 VVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGG 289

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
           SAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALG
Sbjct: 290 SAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALG 334


>gi|34420928|gb|AAQ67709.1| DNA gyrase subunit beta [Aeromonas sp. J4N-98]
          Length = 321

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 113/332 (34%), Positives = 175/332 (52%), Gaps = 15/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++     +  GT + F P P I      +    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSP-IIFTDTLYHYEILAKRLREL 59

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 60  SFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQ 112

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 113 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSK 169

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 170 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLEN 229

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 230 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 289

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 321


>gi|30793646|gb|AAM52885.1| DNA gyrase subunit beta [Aeromonas salmonicida]
 gi|37931129|gb|AAP69925.1| DNA gyrase subunit beta [Aeromonas salmonicida]
 gi|37931139|gb|AAP69930.1| DNA gyrase subunit beta [Aeromonas sp. 440]
 gi|37931143|gb|AAP69932.1| DNA gyrase subunit beta [Aeromonas sp. 361c]
 gi|37931145|gb|AAP69933.1| DNA gyrase subunit beta [Aeromonas sp. 108F]
          Length = 321

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 115/332 (34%), Positives = 176/332 (53%), Gaps = 15/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++     +  GT + F P P IF D   +    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTL-YHYEILAKRLREL 59

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 60  SFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQ 112

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 113 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSK 169

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS +    VE A+ +    +L++N
Sbjct: 170 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVNTAVEQAMGEKLGEFLLEN 229

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 230 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 289

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 321


>gi|106895918|gb|ABE96854.1| DNA gyrase subunit B [Aeromonas sp. MDC67]
          Length = 323

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 115/334 (34%), Positives = 179/334 (53%), Gaps = 15/334 (4%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           +T+ R   ++ Q +  G P +PL++     +  GT + F P P IF D   +    L K 
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTL-YHYEILAKR 59

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F  
Sbjct: 60  LRELSFLNSGVSIRLEDERDGRE-------MHFCYEGGIKAFVEYLNQNKTPIHPKVFHF 112

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +  
Sbjct: 113 STEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKE 169

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +
Sbjct: 170 DYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEF 229

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
           L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL
Sbjct: 230 LLENPSDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSEL 289

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           +IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 290 YIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 323


>gi|30793676|gb|AAM52900.1| DNA gyrase subunit beta [Aeromonas bestiarum]
          Length = 321

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 115/332 (34%), Positives = 177/332 (53%), Gaps = 15/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++     +  GT + F P P IF D   +    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTL-YHYEILAKRLREL 59

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 60  SFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQ 112

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 113 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSK 169

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 170 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVETAVEQAMGEKLGEFLLEN 229

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 230 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 289

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 321


>gi|110084490|gb|ABG49402.1| DNA gyrase subunit beta [Aeromonas sobria]
          Length = 332

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 116/344 (33%), Positives = 182/344 (52%), Gaps = 16/344 (4%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           +T+ R   ++ Q +  G P +PL++        GT + F P   IF D   +    L K 
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDSSG-TGTEVRFWPSSTIFTDTL-YHYEILAKR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F  
Sbjct: 59  LRELSFLNSGVSIRLHDERDGRE-------VHFCYEGGIKAFVEYLNQNKTPIHPKVFHF 111

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            TE  G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +  
Sbjct: 112 TTEHDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKE 168

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +
Sbjct: 169 DYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEF 228

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
           L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL
Sbjct: 229 LLENPSDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSEL 288

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510
           +IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++
Sbjct: 289 YIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISS 332


>gi|30793726|gb|AAM52925.1| DNA gyrase subunit beta [Aeromonas eucrenophila]
          Length = 321

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 115/332 (34%), Positives = 177/332 (53%), Gaps = 15/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++     +  GT + F P P IF D   +    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFSDTL-YHYEILAKRLREL 59

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 60  SFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVEYLNQNKTPIHQKVFHFSTEQ 112

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 113 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSK 169

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 170 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLAEFLLEN 229

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 230 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 289

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 321


>gi|118201810|gb|ABK79718.1| DNA gyrase subunit b [Salipiger mucosus]
          Length = 365

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 131/371 (35%), Positives = 192/371 (51%), Gaps = 15/371 (4%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+ + VTV R        F  G+   PL+       K GT +TF P P++F     F
Sbjct: 1   NALSERVEVTVYRDGKQHFLTFKDGVLDQPLDVVGDAPRKTGTVVTFWPSPEVFSSI-EF 59

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   + K  +  A+L+  V+  +              + + Y+ GG+  +++     R+ 
Sbjct: 60  DGKIVEKRLRELAFLNSGVRINFHDKSRNGVG-----QHDLYYEGGVSEFVKYVDRARTP 114

Query: 283 ISSEIFTGKTEK-----KGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRV 336
           I  +    + E+      G     +E AI W +   E   +Y N I   +GGTH SG+R 
Sbjct: 115 IMKKPVVARGERTVTAGDGEVTIGIEAAIQWNDGYSENVLAYTNNIPQGDGGTHISGMRA 174

Query: 337 ALTRGIKKYAELTQNK--RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I KY E   NK  + + + +DD+      +LSV + +P+F+ QTK KLVS +   
Sbjct: 175 ALTRCISKYVEENINKGRKKVELSADDIREGMTCVLSVKVPDPKFSSQTKDKLVSSEVTG 234

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKL 453
            V+  L D  + +L ++P EA  ++   +E +  R   RK RE++RK A      L GKL
Sbjct: 235 PVKQVLNDVLNSWLEEHPDEAKAVIGKAVEAAAARAAARKAREMSRKKASNDIANLLGKL 294

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
            DC       +ELFIVEGDSAGGSA+Q R+R NQA+LPLRGK+LN   A  ++I  ++QI
Sbjct: 295 KDCQTKNPKESELFIVEGDSAGGSAQQGRSRKNQAILPLRGKVLNTERARLDRILKSEQI 354

Query: 514 MDLVQALGCRT 524
             L+ ALGC  
Sbjct: 355 GTLINALGCGI 365


>gi|37931121|gb|AAP69921.1| DNA gyrase subunit beta [Aeromonas sp. P1W-98]
          Length = 321

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 115/332 (34%), Positives = 177/332 (53%), Gaps = 15/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++     +  GT + F P P IF D   +    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPHAPLKQIGDSSSGTGTEVRFWPSPTIFTDTL-YHYEILAKRLREL 59

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 60  SFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQ 112

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 113 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSK 169

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 170 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLEN 229

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 230 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 289

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 321


>gi|255927059|gb|ACU40915.1| DNA gyrase [Pantoea sp. 1400/07]
          Length = 299

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 97/310 (31%), Positives = 161/310 (51%), Gaps = 15/310 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS++L +T+ R+  +  Q +  G+P +PL    +  +  GTR+ F 
Sbjct: 1   SGGLHGVGVSVVNALSEKLELTIRREGKVHQQTYVHGVPQAPLAVTGET-DLTGTRVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F+   L K  +  ++L+  V       +         + + +++ GG+K
Sbjct: 60  PSHQTFTNVTDFEYEILAKRLRELSFLNSGVSIRLEDKR-------TDKSDHYHYEGGIK 112

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I   +F   TEK G     VE A+ W +     I  + N I   +GGT
Sbjct: 113 AFVEYLNKNKNPIHPNVFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGT 169

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KL
Sbjct: 170 HLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKL 229

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRK 446
           VS + +  VE+ + +    YL++NP +A  ++  +I+        RR +    RK A+  
Sbjct: 230 VSSEVKSAVESQMNELLAEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDL 289

Query: 447 LRLPGKLADC 456
             LPGKLADC
Sbjct: 290 AGLPGKLADC 299


>gi|156946268|gb|ABU98322.1| DNA gyrase subunit beta [Alcanivorax venustensis]
          Length = 352

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 117/363 (32%), Positives = 188/363 (51%), Gaps = 16/363 (4%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS+ L +T+ R   ++ Q +  G+P  PL+      +     I FRP  + F +   F 
Sbjct: 1   ALSESLKLTIRRHGNVYEQSYRHGVPEKPLDTVGTTGSTGTA-IHFRPSSETFTNI-EFH 58

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L K  +  ++L+  V+     ++   E       + F + GGL  ++     +++ +
Sbjct: 59  YDILAKRLRELSFLNSGVRIHLKDERTGDE-------DIFEYEGGLSAFVTYLNRSKTAL 111

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
           +         + G     VE A+ W +     I  + N I   +GG H +G R ALTR +
Sbjct: 112 NEVFHFQFDREDGI---AVEVAMHWNDSYQENIFCFTNNIPQRDGGAHLAGFRAALTRSL 168

Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             Y +      +   +   DD       ++SV + +P+F+ QTK KLVS + +  VE  +
Sbjct: 169 NNYMDREGFLKREKANPTGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTM 228

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQN 459
            + F  YL+++P EA ++++ +I+ +  R   RK R    RK A+    LPGKLADC + 
Sbjct: 229 SEKFQDYLLEHPQEAKQIVQKIIDAARARDAARKARDMTRRKGALDIAGLPGKLADCQEK 288

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
               +EL+IVEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++Q++  L+ A
Sbjct: 289 DPALSELYIVEGDSAGGSAKQGRDRKYQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 348

Query: 520 LGC 522
           LGC
Sbjct: 349 LGC 351


>gi|148470209|gb|ABQ66052.1| gyrase b [uncultured bacterium]
          Length = 303

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 94/295 (31%), Positives = 149/295 (50%), Gaps = 19/295 (6%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +LH+ + R   +  Q++  G P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSSKLHLIINRAGQVHEQEYHHGDPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
            PL    +  +  GT + F P   +   +  F+   L +  +  ++L+  V+     ++ 
Sbjct: 61  YPLRVIGET-DISGTTVRFWPSG-LTCSQTIFNVEILARRLRELSFLNASVRIVLRDERI 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
             E         +   GGL  ++   +       +EIF         +   VE A+ W  
Sbjct: 119 NLE-------HVYDCEGGLSEFVSEYINEGKTHLNEIFHFTA--DTENGIGVEVALQW-- 167

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVG 368
                  + N I   +GGTH +G R ALTRG+ +Y E      K  +++  DD       
Sbjct: 168 ----NRCFTNNIPQKDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTA 223

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
           I+SV + +P+F+ QTK KLVS + +  VE A+   F  YL++NP  A  +   +I
Sbjct: 224 IISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKII 278


>gi|270210838|gb|ACZ64696.1| DNA topoisomerase II beta subunit [Shewanella sp. KCCM 42936]
          Length = 343

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 119/353 (33%), Positives = 188/353 (53%), Gaps = 15/353 (4%)

Query: 168 ELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARL 227
           +L +T+ R+  ++ Q +S G+P +P+++     N  GT I F P    F D   F    L
Sbjct: 1   KLQLTIRREGKLYEQFYSHGVPDAPIKEIGDAIN-TGTEIRFWPSTDTFTDVL-FHFDIL 58

Query: 228 LKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEI 287
            K  +  ++L+  V      +++  +       E F + GG+  ++     N++ ++ ++
Sbjct: 59  AKRVRELSFLNSGVGVRLVDERDNRD-------EFFKYDGGISAFVDYLNVNKTPVNKDV 111

Query: 288 FTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYA 346
           F    E++     TVE A+ W +     I  + N I   +GGTH +G R ALTR +  Y 
Sbjct: 112 FHFIQERED--GITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRGALTRNLNNYM 169

Query: 347 EL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF 404
           E      K   S   DD       ++SV + +P+F+ QTK KLVS + +  VE  + +  
Sbjct: 170 EKEGYNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEQL 229

Query: 405 DHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHG 463
             YL+++P EA  ++  +I+ +  R   RK R    RK A+    LPGKLADC +     
Sbjct: 230 GDYLIEHPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPAL 289

Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
           +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++  L
Sbjct: 290 SEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVTTL 342


>gi|37931149|gb|AAP69935.1| DNA gyrase subunit beta [Aeromonas sp. 107F]
          Length = 321

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 115/332 (34%), Positives = 177/332 (53%), Gaps = 15/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P++PL++     +  GT + F P P IF D   +    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPVAPLKQIGDSSSGTGTEVRFWPSPTIFTDTL-YHYEILAKRLREL 59

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 60  SFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQ 112

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 113 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSK 169

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F  QTK KLVS + +  VE A+ +    +L++N
Sbjct: 170 KAKSAASGDDVREGLIAVISVKVPDPKFFSQTKDKLVSSEVKTAVEQAMGEKLGEFLLEN 229

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 230 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 289

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 321


>gi|164456647|dbj|BAF97816.1| gyrase B subunit [Vibrio chagasii]
          Length = 278

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 88/288 (30%), Positives = 147/288 (51%), Gaps = 13/288 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +  G P SPL       ++ G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYHHGEPQSPLAVIGDT-DQTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I F P  + F +   F    L K  +  ++L+  V      ++E        + + F 
Sbjct: 60  TEIRFWPSEETFSNVL-FHYDILAKRLRELSFLNSGVSIKLIDERE------EDKSDHFM 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           F GG++ ++     N++ I  +IF    E++     TVE A+ W +     I  + N I 
Sbjct: 113 FEGGIQAFVDHLNTNKTPIIQKIFHFDHERED--GITVEVAMQWNDGYQENIYCFTNNIP 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ 
Sbjct: 171 QRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPDPKFSS 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           QTK KLVS + +  VE A+ +    +L++NP EA  +   +I+ +  R
Sbjct: 231 QTKDKLVSSEVKSAVEQAMGEKLSEFLIENPTEAKTVCTKIIDAARAR 278


>gi|210062242|gb|ACJ06170.1| GyrB [Aeromonas media]
          Length = 332

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 116/337 (34%), Positives = 180/337 (53%), Gaps = 16/337 (4%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   +  
Sbjct: 1   LSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFTDTL-YHY 58

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             L K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I 
Sbjct: 59  EILAKRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIH 111

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
            ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR + 
Sbjct: 112 PKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLN 168

Query: 344 KYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ 
Sbjct: 169 SYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMG 228

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNI 460
           +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +  
Sbjct: 229 EKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKD 288

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
              +EL+IVEGDSAGGSAKQ RN  NQA+LPL+GKIL
Sbjct: 289 PALSELYIVEGDSAGGSAKQGRNPQNQAILPLKGKIL 325


>gi|290795079|gb|ADD64555.1| DNA gyrase B [Vibrio cyclitrophicus]
 gi|290795081|gb|ADD64556.1| DNA gyrase B [Vibrio cyclitrophicus]
 gi|290795083|gb|ADD64557.1| DNA gyrase B [Vibrio cyclitrophicus]
 gi|290795085|gb|ADD64558.1| DNA gyrase B [Vibrio cyclitrophicus]
 gi|290795087|gb|ADD64559.1| DNA gyrase B [Vibrio cyclitrophicus]
          Length = 278

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 88/288 (30%), Positives = 149/288 (51%), Gaps = 13/288 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +S G P +PL       +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I F P  + F +   F    L K  +  ++L+  V      ++E        + + F 
Sbjct: 60  TEIRFWPSEETFTN-IEFHYDILAKRLRELSFLNSGVSIKLIDERE------EDKMDHFE 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG++ +++    N++ I  +IF   +E++     TVE A+ W +     I  + N I 
Sbjct: 113 YEGGIQAFVEHLNTNKTPIIQKIFHFNSERED--GITVEVAMQWNDGYQENIYCFTNNIP 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GG H +G R ALTR +  + +      K   S   DD       I+SV + +P+F+ 
Sbjct: 171 QRDGGAHLAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSS 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           QTK KLVS + +  VE+ + +    +L++NP EA  +   +I+ +  R
Sbjct: 231 QTKDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARAR 278


>gi|164456721|dbj|BAF97853.1| gyrase B subunit [Vibrio ponticus]
          Length = 276

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 83/286 (29%), Positives = 147/286 (51%), Gaps = 13/286 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K GT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKVELTIHRGGHIHTQTYHHGEPQAPLAVVGDT-DKTGTM 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F P  + F +   F    L K  +  ++L+  V    + ++E        + + F + 
Sbjct: 60  IRFWPSDQTFTN-VEFHYDILAKRLRELSFLNSGVSIKLADERE------EDKHDHFMYE 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG++ ++     N++ I  ++F   +E++     +VE A+ W +     I  + N I   
Sbjct: 113 GGIQAFVNHLNTNKTPIHEKVFHFNSERED--GISVEVAMQWNDGFQENIYCFTNNIPQR 170

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QT
Sbjct: 171 DGGTHLAGFRAALTRTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQT 230

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           K KLVS + +  VE+ + +    +L ++P EA  +   +I+ +  R
Sbjct: 231 KDKLVSSEVKSAVESTMGEKLSEFLAEHPSEAKMVCSKIIDAARAR 276


>gi|284929879|gb|ADC30025.1| DNA gyrase subunit B [Oscillatoria sp. PCC 8927]
          Length = 294

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 91/295 (30%), Positives = 145/295 (49%), Gaps = 3/295 (1%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E +LT LHAGGKF    Y++SGGLHGVG+SVVNALS+ + VTV R    + Q+F RG P+
Sbjct: 1   ETVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSEWVEVTVFRDKKEYRQRFERGTPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           + L  K     + GT + F PD  IF     FD   +    +  AYL+  VK   +  + 
Sbjct: 61  TELTSKPIKEARTGTSVCFLPDTVIFTSGIEFDCDTIASRLRELAYLNAGVKITLTDSRL 120

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
              +   P  E + + GG++ Y+     ++  +  +I     E+    +  V        
Sbjct: 121 EFLRRETPRIETYCYQGGIREYIAYMNNDKQPLHEDIIYISGERNNV-QIEVALQWCTDA 179

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVG 368
            +  +  + N I T +GGTH  GL+  LTR +   A      +    ++  +++      
Sbjct: 180 YSDTVLGFANNIRTIDGGTHLEGLKTVLTRTLNAMARKRNKLKEGEPNLGGENIREGLTA 239

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
           I+S  + +PEF GQTKT+L + + +  V++ + +    YL  NP  A  ++E  I
Sbjct: 240 IISAKVPDPEFEGQTKTRLGNPEVRGIVDSLVGEALTEYLEFNPGIADAVIEKAI 294


>gi|30793720|gb|AAM52922.1| DNA gyrase subunit beta [Aeromonas salmonicida subsp.
           pectinolytica]
          Length = 321

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 115/332 (34%), Positives = 177/332 (53%), Gaps = 15/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++     +  GT + F P P IF D   +    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPGAPLKQIGDSNSGTGTEVRFWPSPTIFTDTL-YHYEILAKRLREL 59

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 60  SFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQ 112

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 113 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSK 169

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 170 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLEN 229

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 230 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 289

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 321


>gi|210062244|gb|ACJ06171.1| GyrB [Aeromonas allosaccharophila]
          Length = 330

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 116/336 (34%), Positives = 180/336 (53%), Gaps = 16/336 (4%)

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225
           SD+L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   +   
Sbjct: 1   SDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFTDTL-YHYE 58

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
            L K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I  
Sbjct: 59  ILAKRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHP 111

Query: 286 EIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKK 344
           ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  
Sbjct: 112 KVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNS 168

Query: 345 YAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRD 402
           Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +
Sbjct: 169 YMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGE 228

Query: 403 PFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIA 461
               +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +   
Sbjct: 229 KLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDP 288

Query: 462 HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
             +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKIL
Sbjct: 289 ALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKIL 324


>gi|210078009|emb|CAR94872.1| DNA gyrase B subunit [Ochrobactrum grignonense]
          Length = 341

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 109/349 (31%), Positives = 179/349 (51%), Gaps = 12/349 (3%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L + + R   I    F+ G+  +PL       +  GT ++F P P  F     FD   L 
Sbjct: 1   LKLKIRRAGKIHEMAFTHGVADAPLIVTGDAGSDTGTEVSFLPSPDTFT-MIEFDYDTLE 59

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           +  +  A+L+  V+   +  +    +         ++ GG+  +++   + +  +     
Sbjct: 60  RRLRELAFLNSGVRIKLADRRHADIREQE-----LHYDGGVIEFVKYIDKGKKALLETPI 114

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
             K+EK G    TVE A+ W +    ++  + N I   +GGTH +G R ALTR +  YA+
Sbjct: 115 YIKSEKDG---MTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRGALTRQVTGYAD 171

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
            +    K  + +  DD       +LSV + +P+F+ QTK KLVS   +  V++ + +   
Sbjct: 172 ASGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSKVRPVVKSLVNEALS 231

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTE 465
            +L ++P     ++E VI+ +  R   RK R++ RK+ +    LPGKLADC +     +E
Sbjct: 232 TWLEEHPAGGKTIVEKVIQAAAAREAARKARDITRKSNLSVTSLPGKLADCQERDPAKSE 291

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           +FIVEGDSAGGSAK  R+R NQA+LPLRGKILNV     +++ ++ Q+ 
Sbjct: 292 IFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQVG 340


>gi|3172533|gb|AAC18605.1| DNA gyrase B [Francisella tularensis]
          Length = 375

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 64/136 (47%), Positives = 94/136 (69%), Gaps = 1/136 (0%)

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREED 532
           AGGSAKQAR+R  QA+LPL+GKILNV  A  +K+  +Q++  L++ALGC      Y  + 
Sbjct: 1   AGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEVATLIKALGCGIGAEDYNPDK 60

Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAH 592
            RY K+I+MTDADVDG+HI +LLLTFFY++M +L+E+ +L++  PPL+++ +G +  Y  
Sbjct: 61  TRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYLYIAQPPLYKVKKGKQETYLK 120

Query: 593 DEEHKQKILEEFKKHG 608
           DE+   + L      G
Sbjct: 121 DEDALAEYLGNIGLEG 136



 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K  Y    +  +  ++   K  +   ++ R+KGLGEM   QL ET MD + R LL
Sbjct: 278 VERGAKKEYV---DDFESAIDWLLKEARKGNDVQRYKGLGEMNPGQLWETTMDPDNRVLL 334

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +    +       LMG + + R  FI+  A  + ++ 
Sbjct: 335 QVSIKDAV----EADALFTTLMGDEVEPRRNFIESNALNVVNLD 374


>gi|37931161|gb|AAP69941.1| DNA gyrase subunit beta [Aeromonas popoffii]
 gi|37931163|gb|AAP69942.1| DNA gyrase subunit beta [Aeromonas popoffii]
          Length = 321

 Score =  157 bits (396), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 114/332 (34%), Positives = 176/332 (53%), Gaps = 15/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++     +  GT + F P P IF D   +    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPHAPLKQIGDSSSGTGTEVRFWPSPTIFTDTL-YHYEILAKRLREL 59

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F    E+
Sbjct: 60  SFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSIEQ 112

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 113 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSK 169

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 170 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLEN 229

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 230 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 289

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 321


>gi|213494439|gb|ACJ48958.1| DNA gyrase subunit B [Pseudomonas plecoglossicida]
          Length = 334

 Score =  157 bits (396), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 115/345 (33%), Positives = 181/345 (52%), Gaps = 15/345 (4%)

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
            Q +  G+P +P+          GT I F+P  + F +   F    L K  +  ++L+  
Sbjct: 1   EQTYVHGVPQAPMAVVGD-SESTGTHIHFKPSAETFKNIH-FSWDILAKRIRELSFLNSG 58

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
           V      ++   E       E F + GGL+ +++    N++ ++S++F    +++     
Sbjct: 59  VGILLKDERSGKE-------EFFKYEGGLRAFVEYLNTNKTPVNSQVFHFNVQRED--GV 109

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISI 357
            VE A+ W +     +  + N I   +GGTH  G R +LTR +  Y E      K  ++ 
Sbjct: 110 GVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRSLNSYIEQEGLAKKNKVAT 169

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD       I+SV + +P+F+ QTK KLVS + +  VE  +   F  +L++NP EA  
Sbjct: 170 TGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNKYFADFLLENPNEAKA 229

Query: 418 LLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           ++  +I+ +  R   RK R    RK A+    LPGKLADC +     +EL++VEGDSAGG
Sbjct: 230 VVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGG 289

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
           SAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALG
Sbjct: 290 SAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALG 334


>gi|242117650|dbj|BAH80097.1| DNA gyrase beta subunit [Aeromonas salmonicida subsp. salmonicida]
 gi|288269643|dbj|BAI68105.1| DNA gyrase beta subunit [Aeromonas salmonicida]
          Length = 320

 Score =  157 bits (396), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 114/331 (34%), Positives = 176/331 (53%), Gaps = 15/331 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++     +  GT + F P P IF D   +    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTL-YHYEILAKRLREL 59

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 60  SFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQ 112

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 113 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSK 169

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 170 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLEN 229

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 230 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 289

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  
Sbjct: 290 GDSAGGSAKQGRNRKNQAILPLKGKILNVEK 320


>gi|329571649|gb|EGG53330.1| DNA gyrase, B subunit protein [Enterococcus faecalis TX1467]
          Length = 155

 Score =  157 bits (396), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 12/115 (10%)

Query: 570 KHLFLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
             +++  PPL+++++G   KSV  YA  +    +++++  K       + R+KGLGEM A
Sbjct: 2   GKVYIALPPLYKVSKGTGKKSVIEYAWTDGELAEVIDKVGK----GYMLQRYKGLGEMNA 57

Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
            QL ET MD   RTL+RV I+         +  +  LMG K + R K+I++   F
Sbjct: 58  EQLWETTMDPETRTLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIEQHVQF 108


>gi|321117372|dbj|BAJ72163.1| gyrase B [Erwinia sp. 'uzenensis']
          Length = 333

 Score =  157 bits (396), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 102/343 (29%), Positives = 172/343 (50%), Gaps = 15/343 (4%)

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
            R+  +  Q +  G+P + L    +  +  GTR+ F P  + F +   F+   L K  + 
Sbjct: 1   RREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRE 59

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            ++L+  V       ++        + + +++ GG+K +++   +N++ I    F   TE
Sbjct: 60  LSFLNSGVSIKLEDKRD-------GKNDHYHYEGGIKAFVEYLNKNKTPIHPNAFYFSTE 112

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350
           K G     VE A+ W +     I  + N I    GGTH +G R A+TR +  Y +     
Sbjct: 113 KDGI---GVEVALQWNDGFQENIYCFTNNIPQRGGGTHLAGFRAAMTRTLNAYMDKEGYS 169

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++
Sbjct: 170 KKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSFEVKSAVEQQMNELLFEYLLE 229

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNR-KTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           +P +A  ++  +I+ +  R    + RE+ R K A+    LPGKLADC +       +++V
Sbjct: 230 HPGDAKIVVGKIIDAARAREAAPRAREMTRCKGALDLAGLPGKLADCQERDPALFXIYLV 289

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           EGD AGG AKQ RNR  QA+ P +GKILNV     +K+  + +
Sbjct: 290 EGDFAGGFAKQGRNRKKQAIPPXKGKILNVEKTRFDKMLASPE 332


>gi|322875026|gb|ADX20836.1| DNA gyrase subunit B [Legionella longbeachae]
          Length = 208

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 78/220 (35%), Positives = 124/220 (56%), Gaps = 14/220 (6%)

Query: 113 GRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVT 172
           GRGIPV+ H K   +S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+ELH+T
Sbjct: 1   GRGIPVDIH-KEQGRSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLT 59

Query: 173 VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQ 232
           V R   I  Q++  G+P +P+ +        GT+I F+P    F +   F    L K  +
Sbjct: 60  VRRHGKIHEQRYRNGVPDAPMAETGDAT-TTGTQIWFKPSADTFSN-IEFHYDILAKRLR 117

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             +YL+  V      ++          ++ F++ GG+K +++   +N+++I   +F+   
Sbjct: 118 ELSYLNSGVCIHLFDERSQ-------RQDTFHYEGGIKAFVEHLNKNKNVIMPIVFSMTA 170

Query: 293 EKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHE 331
           EK+      VE ++ W +   E    + N I   +GGTH 
Sbjct: 171 EKENI---VVELSMQWNDSYQETLYCFTNNIPQRDGGTHM 207


>gi|284929885|gb|ADC30028.1| DNA gyrase subunit B [Planktothrix sp. PCC 9214]
          Length = 294

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 94/295 (31%), Positives = 146/295 (49%), Gaps = 3/295 (1%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E +LT LHAGGKF    Y++SGGLHGVG+SVVNALS+ + VTV R    + Q+F RG P+
Sbjct: 1   ETVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSEWVEVTVFRDKKEYRQRFERGTPV 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           + L  K    N+ GT + F PD  IF     FD   +    +  AYL+  VK   S  + 
Sbjct: 61  TELTSKPIKENRTGTSLRFFPDSLIFTTGIEFDCDTIASRLRELAYLNAGVKVTLSDHRL 120

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
              K   P  E + + GG++ Y+     ++  +  +I     E+    +  V        
Sbjct: 121 ELLKRETPRIETYCYEGGIREYIAYMNNDKQPLHEDIIYISGERNNV-QIEVALQWCTDA 179

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVG 368
            +  I  + N I T +GGTH  GL+  LTR +   A      +    ++  +++      
Sbjct: 180 YSDTILGFANNIRTIDGGTHLEGLKTVLTRTLNTIARKRNKLKEGEANLGGENIREGLTA 239

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
           ++S  + +PEF GQTKT+L + + +  V++ + +    YL  NP  A  ++E  I
Sbjct: 240 VISAKVPDPEFEGQTKTRLGNPEVRGIVDSLVGEALTEYLEFNPGIADAVIEKAI 294


>gi|295841359|dbj|BAJ07093.1| gyrase B [midgut symbiont of Parastrachia japonensis]
 gi|295841361|dbj|BAJ07094.1| gyrase B [midgut symbiont of Parastrachia japonensis]
 gi|295841363|dbj|BAJ07095.1| gyrase B [midgut symbiont of Parastrachia japonensis]
 gi|295841365|dbj|BAJ07096.1| gyrase B [midgut symbiont of Parastrachia japonensis]
 gi|295841367|dbj|BAJ07097.1| gyrase B [midgut symbiont of Parastrachia japonensis]
 gi|295841369|dbj|BAJ07098.1| gyrase B [midgut symbiont of Parastrachia japonensis]
 gi|295841371|dbj|BAJ07099.1| gyrase B [midgut symbiont of Parastrachia japonensis]
          Length = 321

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 102/332 (30%), Positives = 177/332 (53%), Gaps = 15/332 (4%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200
           GKFD+++Y++SGGLHGVG+SVVNALS +L + + R+   F Q +  G P +PL    K  
Sbjct: 1   GKFDDNSYKVSGGLHGVGVSVVNALSSKLKLIINREGKKFYQIYFNGKPAAPLSIIGK-S 59

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
           N  GT + F P+  IF     F+   L K  +  ++L+  V      ++         ++
Sbjct: 60  NLTGTYVQFWPNHNIFNKIINFEYQILAKRLRELSFLNSSVSIDLKDERL-------DKR 112

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
           + F + GG+K +++   +N+  I  ++    ++ +     +++ A+ W +     I  + 
Sbjct: 113 DHFQYKGGIKEFIEYLNKNKMPIHQKVLYFSSQTESI---SIQVALQWNDSFQENIYCFT 169

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAE--LTQNKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH +G R A+TR I  Y +      K  I++I DD     + I+SV ++ P
Sbjct: 170 NNIPQRDGGTHLAGFRAAITRTINTYMDKEYYNKKSKINVIGDDTREGLIAIISVRVQNP 229

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +F+ QTK KL+S + +  VE  + +    +L++NP +A  ++  +++ S  R   R+ RE
Sbjct: 230 KFSSQTKDKLISSEVKSAVEQKMNEWLIEFLLENPSDAKIIIGKIVDASRAREASRRARE 289

Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFI 468
              RK A+    LPGKLADC +     +E+++
Sbjct: 290 ITRRKGALDLACLPGKLADCQERNPALSEIYL 321


>gi|164456673|dbj|BAF97829.1| gyrase B subunit [Vibrio gigantis]
          Length = 279

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 88/289 (30%), Positives = 150/289 (51%), Gaps = 13/289 (4%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +S G P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT I F P  + F +   F    L K  +  ++L+  V      ++E        + + F
Sbjct: 60  GTEIRFWPSEETFTN-IEFHYDILAKRLRELSFLNSGVSIKLIDERE------EDKMDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ +++    N++ I  +IF   +E++     TVE A+ W +     I  + N I
Sbjct: 113 EYEGGIQAFVEHLNTNKTPIIQKIFHFNSERED--GITVEVAMQWNDGYQENIYCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GG H +G R ALTR +  + +      K   +   DD       I+SV + +P+F+
Sbjct: 171 PQRDGGAHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAIVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
            QTK KLVS + +  VE+ + +    +L++NP EA  +   +I+ +  R
Sbjct: 231 SQTKDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKTVCSKIIDAARAR 279


>gi|146431958|gb|ABQ40961.1| DNA gyrase B subunit [Vibrio campbellii]
          Length = 276

 Score =  156 bits (395), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 86/286 (30%), Positives = 147/286 (51%), Gaps = 13/286 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL          GT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDTEK-TGTQ 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F P  + F +   F    L K  +  ++L+  V      ++E        + + F F 
Sbjct: 60  IRFWPSAETFSN-TEFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KSDHFMFE 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG++ +++    N++ I  +IF    E++     +VE A+ W +     I  + N I   
Sbjct: 113 GGIQAFVEHLNTNKTPIIEKIFHFDFERED--GISVEVAMQWNDGFQENIYCFTNNIPQR 170

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QT
Sbjct: 171 DGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQT 230

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           K KLVS + +  VE+A+ +    +L++NP EA  +   +I+ +  R
Sbjct: 231 KDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAR 276


>gi|110225002|dbj|BAE97490.1| DNA gyrase subunit B [Streptococcus phocae]
          Length = 300

 Score =  156 bits (395), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 100/302 (33%), Positives = 156/302 (51%), Gaps = 12/302 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS +L V V +   I+ Q+F +G  ++ L       +  G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSKQLDVRVYKNGHIYYQEFKQGAVINDLSIIG-TTDLSG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PDP+IF +   FD   L K  Q  A+L+  +K      +  +E     ++E F+
Sbjct: 60  TAVHFTPDPEIFTETTEFDYNVLSKRIQELAFLNRGLKISIKDSRPGSE-----QEEHFH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTIL 323
           + GG+ +Y+    + + +I         E  G    TVE A+ +     E + S+ N I 
Sbjct: 115 YEGGIGSYVGFLNDKKDVIFETPIYTDGELDGI---TVEVAMQYTTGYHELVISFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G R ALTR I  YA+  +   +   ++  +D+      ++SV    P+F G
Sbjct: 172 THEGGTHEQGFRTALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + +  +       D F  +L++NP  A +++E  I  S+ R+  ++ REV RK
Sbjct: 232 QTKTKLGNSEVVKITNRLFSDAFQRFLLENPQVARRIVEKGILASKARVAAKRAREVTRK 291

Query: 442 TA 443
            +
Sbjct: 292 KS 293


>gi|92918994|gb|ABE96844.1| DNA gyrase subunit B [Aeromonas simiae]
 gi|92918996|gb|ABE96845.1| DNA gyrase subunit B [Aeromonas simiae]
          Length = 321

 Score =  156 bits (395), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 115/333 (34%), Positives = 179/333 (53%), Gaps = 17/333 (5%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           RQ  ++ Q +  G P +PL++        GT + F P P IF D   F    L K  +  
Sbjct: 1   RQGHVYEQTYKLGEPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTL-FHYETLAKRLREL 58

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V    S +++  E         F + GG+K +++   ++++ I  ++F   TE+
Sbjct: 59  SFLNSGVSIVLSDERDGREIN-------FCYEGGIKAFVEYLNQSKTPIHPKVFHFSTEQ 111

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE---LTQ 350
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +    ++
Sbjct: 112 DGI---GVEVAMQWNDGYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSK 168

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
             +  +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++
Sbjct: 169 KAKMSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKMAEFLLE 228

Query: 411 NPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLADC +     +EL+IV
Sbjct: 229 NPSDAKIVVNKIIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYIV 288

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           EGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 289 EGDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 321


>gi|321117350|dbj|BAJ72152.1| gyrase B [Erwinia sp. 'uzenensis']
          Length = 333

 Score =  156 bits (395), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 104/343 (30%), Positives = 175/343 (51%), Gaps = 15/343 (4%)

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
            R+  +  Q +  G+P + L    +  +  GTR+ F P  + F +   F+   L K  + 
Sbjct: 1   RREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRE 59

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            ++L+  V       ++        + + +++ GG+K +++   +N++ I    F   TE
Sbjct: 60  LSFLNSGVSIKLEDKRD-------GKNDHYHYEGGIKAFVEYLNKNKTPIHPNAFYFSTE 112

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350
           K G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +     
Sbjct: 113 KDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGXS 169

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++
Sbjct: 170 KKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSXEVKSAVEQQMNELLXEYLLE 229

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNR-KTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           +P +A  ++  +I+ +  R    + RE+ R K A+    LPGKLADC +      E+++V
Sbjct: 230 HPGDAKIVVGKIIDAARAREAAPRAREMTRCKGALDLAGLPGKLADCQERDPALFEIYLV 289

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           EGD AGG AKQ RNR  QA+ PL+GKILNV     +K+  + +
Sbjct: 290 EGDFAGGFAKQGRNRKKQAIPPLKGKILNVEKTRFDKMLASPE 332


>gi|295148897|gb|ADF80934.1| DNA gyrase subunit B [Vibrio sp. AM2]
          Length = 283

 Score =  156 bits (395), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 85/288 (29%), Positives = 146/288 (50%), Gaps = 13/288 (4%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
            +Y++SGGLHGVGISVVNALS+++ +T+ R   I +Q +  G+P  PL++     +  GT
Sbjct: 1   HSYKVSGGLHGVGISVVNALSEKVELTIHRNGKIHTQTYHHGVPDEPLKEIGDTED-SGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           ++ F P  + F +   F    L K  +  ++L+  V      ++E        ++  + +
Sbjct: 60  KVRFWPSAETFTN-IEFVYEILAKRLRELSFLNSGVSIHLRDEREDN------KQNHYMY 112

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG++ ++     N++ I  ++F    E++     TVE A+ W +     I  + N I  
Sbjct: 113 DGGIQAFVTHLNRNKTPIHEKVFHFVQERED--GITVEVALQWNDGFQESIFCFTNNIPQ 170

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTR +  Y +      K   S   DD       ++SV + +P+F+ Q
Sbjct: 171 RDGGTHLAGFRAALTRTLNSYMDKEGYSKKAKTSASGDDAREGLTAVISVKVPDPKFSSQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           TK KLVS + +  VE  + +    YL ++P EA  +   +I+ +  R 
Sbjct: 231 TKDKLVSSEVKSAVETTMGEKLGDYLAEHPNEAKTICTKIIDAARARE 278


>gi|23978208|dbj|BAC21104.1| DNA gyrase B subunit [Arthrospira platensis]
          Length = 323

 Score =  156 bits (395), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 98/322 (30%), Positives = 162/322 (50%), Gaps = 4/322 (1%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           F    Y++SGGLHGVGISVVNALS+ + VTV R +  + Q++ RG+P++ LE+     ++
Sbjct: 1   FGGGGYKVSGGLHGVGISVVNALSEWVEVTVLRDHKRYVQRYERGVPVTELEEHSSKESQ 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT + F+PD KIF     F+   +    +  AYL+  V+   + ++    K    + E 
Sbjct: 61  TGTSVCFKPDTKIFTTGIEFEYDTIASRLRELAYLNAGVRITLTDNRLELLKREEAKVES 120

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322
           + + GG+K Y+      +  +  +      E+    +  V         +  I  + N I
Sbjct: 121 YCYEGGIKEYVTYMNREKQALHEDTIYVSGERNNV-QVEVALQWCVDAYSDTILGFANNI 179

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFA 380
            T +GGTH  GL+  LTR +   A      +    ++  +++     G++SV + +PEF 
Sbjct: 180 RTVDGGTHLEGLKTVLTRTMNAIARKRNKIKDNEPNLGGENVREGLTGVISVKVPDPEFE 239

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VN 439
           GQTKTKL + + +  V++ + +    +L  NP  A  +LE  I+  +     R+ R+ V 
Sbjct: 240 GQTKTKLGNTEVRGIVDSLVGEVLTEFLDFNPNVADAILEKAIQAFKAAEAARRARDLVR 299

Query: 440 RKTAIRKLRLPGKLADCSQNIA 461
           RK+ +    LPGKLADCS    
Sbjct: 300 RKSVLESSPLPGKLADCSSRDP 321


>gi|164456733|dbj|BAF97859.1| gyrase B subunit [Vibrio tapetis]
          Length = 278

 Score =  156 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 85/288 (29%), Positives = 145/288 (50%), Gaps = 13/288 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS ++ +T+ RQ +   Q +  G P +PL          G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSKQVDLTIHRQGSTHQQTYRHGEPDAPLGATGDTEK-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I F P  + F +   F    L K  +  ++L+  V      ++E        + + F 
Sbjct: 60  TIIRFWPSEETFTNVH-FHYEILAKRLRELSFLNSGVSIKLIDERE------EDKMDHFC 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG + ++     N++ I  ++F    E++     +VE A+ W +     I  + N I 
Sbjct: 113 YEGGTQAFVDYLNTNKTPIIQKVFHFDYERED--GISVEVAMQWNDGYQENIFCFTNNIP 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  + +      K   +   DD       I+SV + +P+F+ 
Sbjct: 171 QRDGGTHLAGFRAALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAIVSVKVPDPKFSS 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           QTK KLVS + +  VE+A+ +    +L++NP EA  +   +I+ +  R
Sbjct: 231 QTKDKLVSSEVKSAVESAMGEKLSEFLIENPSEAKIVCSKIIDAARAR 278


>gi|284929883|gb|ADC30027.1| DNA gyrase subunit B [Oscillatoria sp. PCC 9018]
          Length = 294

 Score =  156 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 92/295 (31%), Positives = 147/295 (49%), Gaps = 3/295 (1%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E +LT LHAGGKF    Y++SGGLHGVG+SVVNALS+ L VTV R    +SQ+F RG P 
Sbjct: 1   ETVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSEWLEVTVFRDKKEYSQRFERGTPA 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           + L  K     + GT ++F PD  IF     FD   +    +  AYL+  VK   + ++ 
Sbjct: 61  TELTSKPIKEARTGTSVSFFPDTSIFTTGIEFDCDIIASRLRELAYLNAGVKITLTDNRL 120

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                  P  E + + GG++ Y+    +++  +  +I     E+    +  V        
Sbjct: 121 ELLNRETPRIETYCYEGGIREYIAYMNKDKQPLHEDIIYTSGERSNV-QIEVALQWCTDA 179

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVG 368
            +  +  + N I T +GGTH  GL+  LTR +   A      +    ++  +++      
Sbjct: 180 YSDTVLGFANNIRTIDGGTHLEGLKTVLTRTLNAIARKRNKLKEGEANLGGENIREGLTA 239

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
           ++S  + +PEF GQTKT+L + + +  V++ + +    YL  NP  A  ++E  I
Sbjct: 240 VISAKVPDPEFEGQTKTRLGNPEVRGIVDSLVGEALTEYLEFNPGIADAVIEKAI 294


>gi|218139461|gb|ACK57888.1| GyrB [Actinobaculum schaalii]
          Length = 390

 Score =  156 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 109/392 (27%), Positives = 177/392 (45%), Gaps = 22/392 (5%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           +   V R   ++   +  G+P   LE+ E+      T  TF  +P IF     +D   L 
Sbjct: 1   METIVKRDGYVWRIAYENGVPTRELERGEETTETG-TTQTFWANPDIFETT-DYDFETLR 58

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAE---------------KYGIPEKEEFYFPGGLKTYL 273
           K     A+L+  ++     ++  A                +     +  + + GGL  Y+
Sbjct: 59  KRFHQMAFLNKNLRINLIDERRSATSEGDEVTGAEGEAAAEVPAKREVSYCYSGGLLDYV 118

Query: 274 QTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           +     +            E +    +  VE A+ W       + ++ NTI T EGG HE
Sbjct: 119 KFLNSMKKSDIINNDIIYFEAEDDEKQIEVEVAMQWTSAYSESVNTFANTINTTEGGMHE 178

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G R ALT  I KYA        +  ++  DD+      ++SV +  P+F GQTKTKL +
Sbjct: 179 EGFRSALTSVINKYAREHGLLKDKDPNLSGDDVREGLTAVISVKLGNPQFEGQTKTKLGN 238

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLR 448
            +A+  V+  +      +L  +P +A +++    +    R   RK RE  R+ + +    
Sbjct: 239 TEARTFVQQQMYTQLSDWLDSHPADAKEIIRKGTQAFAARAAARKAREATRRKSVLESAS 298

Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           +PGKL DC+ N     E+FIVEGDSAGGSA   R+  +QA++P+RGKILNV  A  ++  
Sbjct: 299 MPGKLKDCTSNKPEECEIFIVEGDSAGGSAVNGRDPEHQAIMPIRGKILNVEKARLDRAL 358

Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           ++  I  L+ A G     ++  + L   K+I 
Sbjct: 359 SSDTIQSLITAFGTGIGDEFDIDKLXXHKIIS 390


>gi|164456631|dbj|BAF97808.1| gyrase B subunit [Enterovibrio coralii]
          Length = 275

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 85/285 (29%), Positives = 152/285 (53%), Gaps = 13/285 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS++L +T+ R   I  Q +  G+P +PL    +  ++ G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLELTIWRHGQIHQQVYHSGVPEAPLAPIGET-DETG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           TRI F P  + F D   F    L K  +  ++L+  V    + ++E        + + F 
Sbjct: 60  TRIRFWPSGETFSDLL-FHYDILAKRLRELSFLNSGVSIRLNDERE------EDKHDHFT 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG++ +++    N++ I   +F  + E++     TVE ++ W +     I  + N I 
Sbjct: 113 YEGGIRAFVEHLNRNKNPIHPSVFHFEHERED--GVTVEVSMQWNDGFQENIYCFTNNIP 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  + E      K   +   DD       ++SV + +P+F+ 
Sbjct: 171 QRDGGTHLAGFRAALTRTLNTFMEKEGYSKKANAATSGDDAREGLTAVVSVKVPDPKFSS 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
           QTK KLVS + +  VE+A+ +    +L++NP ++  +   +I+ +
Sbjct: 231 QTKDKLVSSEVKSAVESAMNEKLSEFLIENPQDSKIVCTKIIDAA 275


>gi|30793692|gb|AAM52908.1| DNA gyrase subunit beta [Aeromonas jandaei]
 gi|194273618|gb|ACF37507.1| GyrB [Aeromonas jandaei]
 gi|194273620|gb|ACF37508.1| GyrB [Aeromonas jandaei]
          Length = 320

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 117/332 (35%), Positives = 176/332 (53%), Gaps = 16/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEILAKRLREL 58

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 59  SFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 111

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y E      
Sbjct: 112 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMEKEDYSK 168

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 169 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLEN 228

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 229 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 288

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 289 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 320


>gi|46204959|ref|ZP_00049238.2| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), B subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 266

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 167/259 (64%), Positives = 206/259 (79%), Gaps = 2/259 (0%)

Query: 300 GTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISI 357
           G++EWA+AW   ++    SYCNTI T EGGTHESGLRVAL RG++++AE     KR  ++
Sbjct: 8   GSLEWAVAWTVADDGVSHSYCNTIPTPEGGTHESGLRVALLRGLREHAERVNQAKRMTAV 67

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
            +DD+M +   +LSVFIREPEF GQTK KL +++A R VE A+RD FDH+L  +P +A K
Sbjct: 68  TTDDVMATCASMLSVFIREPEFQGQTKDKLATVEASRIVETAVRDAFDHWLAASPAQANK 127

Query: 418 LLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           LL+WVI+R+EERLRRR+++EV RK+A RKLRLPGKLADCS     G+E+FIVEGDSAGGS
Sbjct: 128 LLDWVIDRAEERLRRRQEKEVARKSATRKLRLPGKLADCSAAGTAGSEIFIVEGDSAGGS 187

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
           AKQAR+R+ QAVLPLRGKILNVASA  +K+  NQ I DL  ALGC T + +RE DLRY+K
Sbjct: 188 AKQARDRATQAVLPLRGKILNVASASRDKLGANQLISDLTLALGCGTGANFREGDLRYDK 247

Query: 538 VIIMTDADVDGAHIASLLL 556
           VIIMTDADVDGAHIASLL+
Sbjct: 248 VIIMTDADVDGAHIASLLI 266


>gi|37931115|gb|AAP69918.1| DNA gyrase subunit beta [Aeromonas sp. 140P]
 gi|37931117|gb|AAP69919.1| DNA gyrase subunit beta [Aeromonas sp. 830]
          Length = 320

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 116/332 (34%), Positives = 176/332 (53%), Gaps = 16/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEILAKRLREL 58

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 59  SFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 111

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 112 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSK 168

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 169 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLEN 228

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 229 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 288

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 289 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 320


>gi|30793670|gb|AAM52897.1| DNA gyrase subunit beta [Aeromonas salmonicida subsp. achromogenes]
          Length = 321

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 115/332 (34%), Positives = 176/332 (53%), Gaps = 15/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++     +  GT + F P P IF D   +    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTL-YHYEILAKRLREL 59

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F   GG+K +++   +N++ I  ++F   TE+
Sbjct: 60  SFLNSGVSIRLQDERDGRE-------VHFCXEGGIKAFVEYLNQNKTPIHPKVFHFSTEQ 112

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 113 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSK 169

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 170 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLEN 229

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 230 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 289

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 321


>gi|92918982|gb|ABE96839.1| DNA gyrase subunit B [Aeromonas veronii]
          Length = 320

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 116/332 (34%), Positives = 176/332 (53%), Gaps = 16/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEILAKRLREL 58

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 59  SFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 111

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 112 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSK 168

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 169 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLEN 228

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 229 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 288

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 289 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 320


>gi|308153086|dbj|BAJ22132.1| DNA gyrase subunit B [Streptomyces griseosporeus]
          Length = 320

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 93/313 (29%), Positives = 158/313 (50%), Gaps = 16/313 (5%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y +SGGLHGVG+SVVNALS ++ V V      ++Q +  G+P +PL + E  +   GT
Sbjct: 1   GGYAVSGGLHGVGVSVVNALSSKVAVEVRTDGHRWTQDYKMGVPTAPLAQHEATQE-TGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI-----------AEK 254
            +TF  DP IF     +    L +  Q  A+L+  +    + ++E            A++
Sbjct: 60  SVTFWADPDIFET-TEYSFETLSRRFQEMAFLNKGLTIKLTDERESAKATAGADEAGADE 118

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE 314
               +   +++ GG+  +++     +  +      G   +      ++E A+ W     E
Sbjct: 119 KDEAKTVTYHYEGGIVDFVKYLNARKGDVVHPTIIGLEAEDKDKSLSLEVAMQWNSGYSE 178

Query: 315 -ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILS 371
            + S+ N I T EGGTHE G R ALT  I KYA   +   ++  ++  DD+      I+S
Sbjct: 179 GVYSFANIIHTHEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIIS 238

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V + EP+F GQTKTKL + +A+  V+ A+ +  + +L +NP EA  ++   I+ +  R+ 
Sbjct: 239 VKLSEPQFEGQTKTKLGNTEAKTFVQKAVYEHLNDWLDRNPNEAADIVRKGIQAATARVA 298

Query: 432 RRKQREVNRKTAI 444
            RK R++ R+  +
Sbjct: 299 ARKARDLTRRKGL 311


>gi|30793656|gb|AAM52890.1| DNA gyrase subunit beta [Aeromonas hydrophila]
 gi|37931119|gb|AAP69920.1| DNA gyrase subunit beta [Aeromonas sp. 874]
          Length = 320

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 116/332 (34%), Positives = 176/332 (53%), Gaps = 16/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEILAKRLREL 58

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 59  SFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 111

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 112 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSK 168

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 169 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLEN 228

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 229 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 288

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 289 GDSAGGSAKQGRNRXNQAILPLKGKILNVEKA 320


>gi|321117340|dbj|BAJ72147.1| gyrase B [Erwinia sp. 'uzenensis']
          Length = 333

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 103/343 (30%), Positives = 172/343 (50%), Gaps = 15/343 (4%)

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
            R+  +  Q +  G+P + L    +  +  GTR+ F P  + F +   F+   L K  + 
Sbjct: 1   RREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRE 59

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            ++L+  V       ++        + + +++ GG+K +++   +N++ I    F   TE
Sbjct: 60  LSFLNSGVSIKLEDKRD-------GKNDHYHYEGGIKAFVEYLNKNKTPIHPNAFYFSTE 112

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350
           K G     VE A+ W +     I  + N I    GGTH +G R A+TR    Y +     
Sbjct: 113 KDGI---GVEVALQWXDGFQENIYCFTNNIPQRXGGTHLAGFRAAMTRTXNAYMDKEGFS 169

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++
Sbjct: 170 KKAKVSATGDDAREGLIAVVSVKVPDPKFSXQTKDKLVSFEXKXAVEQQMNELLFEYLLE 229

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNR-KTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           +P +A  ++  +I+ +  R    + RE+ R K A+    LPGKLADC +       +++V
Sbjct: 230 HPGDAKIVVGKIIDAARAREAAPRAREMTRCKGALDLAGLPGKLADCQERDPALFXIYLV 289

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           EGD AGG AKQ RNR  QA+ PL+GKILNV     +K+  + +
Sbjct: 290 EGDFAGGFAKQGRNRKKQAIPPLKGKILNVEKXRFDKMLASPE 332


>gi|37931147|gb|AAP69934.1| DNA gyrase subunit beta [Aeromonas sp. 22]
          Length = 321

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 116/332 (34%), Positives = 177/332 (53%), Gaps = 15/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++     +  GT + F P P IF D   +    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTL-YHYEILAKRLREL 59

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 60  SFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQ 112

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 113 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSK 169

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV +R+P+F+ QTK KLVS +    VE A+ +    +L++N
Sbjct: 170 KAKSAASGDDVREGLIAVISVKVRDPKFSSQTKVKLVSSEVNTAVEQAMGEKLGEFLLEN 229

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 230 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 289

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 321


>gi|115500928|dbj|BAF34134.1| B subunit gyrase [Azotobacter nigricans subsp. nigricans]
          Length = 249

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 91/261 (34%), Positives = 138/261 (52%), Gaps = 16/261 (6%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+EL +T+ R   ++ Q +  G+P 
Sbjct: 1   EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELVLTIRRDGKVWEQTYVHGVPQ 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           +PL          GT+I F+P  + F +   F    L K  +  ++L+  V      ++ 
Sbjct: 61  APLAAVGDTEG-TGTQIHFKPSAETFHNIH-FSWDILAKRLRELSFLNSGVGIVLKDERS 118

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWC 309
             E       E F + GGLK ++     N++ +S       + E+ G     VE A+ W 
Sbjct: 119 GKE-------ELFKYEGGLKAFVDYLNTNKNAVSQVFHFNMQREEDGV---GVEVALQWN 168

Query: 310 E-ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISA 366
           +  N  I  + N I   +GGTH +G R ALTR +  Y E      K  ++   DD     
Sbjct: 169 DGFNENILCFTNNIPQRDGGTHLAGFRSALTRNLNAYIEQEGLAKKHKVATTGDDAREGL 228

Query: 367 VGILSVFIREPEFAGQTKTKL 387
             I+SV + +P+F+ QTK KL
Sbjct: 229 TAIISVKVPDPKFSSQTKDKL 249


>gi|169248044|gb|ACA51805.1| DNA gyrase subunit B [Aliivibrio salmonicida]
          Length = 331

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 118/339 (34%), Positives = 176/339 (51%), Gaps = 13/339 (3%)

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
           F Q +  G+P +PL       +  GT+I F P  + F +   F    L K  +  ++L+ 
Sbjct: 1   FQQIYCHGVPQAPLAVIG-TTDTTGTKIRFWPSDQTFANI-EFVYDILAKRLRELSFLNS 58

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            V       +E        + + F F GG+K ++     N++ +  +IF   +E+K    
Sbjct: 59  GVSIRLQDMRE------EDKSDHFMFEGGIKAFVTHLNRNKTPVHQKIFYFDSERK-EDG 111

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
             VE A+ W +     I  Y N I   +GG H SG R ALTR +  + +      K   S
Sbjct: 112 IVVEVAMQWNDSYQENIFCYTNNIPQRDGGAHLSGFRSALTRTLNSFMDKEGFSKKAKSS 171

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
              DD       ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +L +NP EA 
Sbjct: 172 ASGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLAEFLAENPGEAK 231

Query: 417 KLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            +   +I+ +  R   RK R    RK A+    LPGKLADC +     +EL+IVEGDSAG
Sbjct: 232 MVCSKIIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPAQSELYIVEGDSAG 291

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           GSAKQ RNR NQA+LPL+GKILNV  A  +K+ ++Q++ 
Sbjct: 292 GSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVG 330


>gi|37931133|gb|AAP69927.1| DNA gyrase subunit beta [Aeromonas sp. 120P]
          Length = 321

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 115/332 (34%), Positives = 176/332 (53%), Gaps = 15/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++     +  GT + F P P IF D   +    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTL-YHYEILAKRLREL 59

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 60  SFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQ 112

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 113 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSK 169

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV   +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 170 KAKSAASGDDVREGLIAVISVKEPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLEN 229

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 230 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 289

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 321


>gi|30793742|gb|AAM52933.1| DNA gyrase subunit beta [Aeromonas popoffii]
          Length = 321

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 114/332 (34%), Positives = 175/332 (52%), Gaps = 15/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++     +  GT + F P P IF D   +    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTL-YHYEILAKRLREL 59

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      + +  E         F + GG+K +++   +N++ I  ++F    E+
Sbjct: 60  SFLNSGVSIRLQDEPDGRE-------VHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSIEQ 112

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 113 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSK 169

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 170 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLEN 229

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 230 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 289

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 321


>gi|164456689|dbj|BAF97837.1| gyrase B subunit [Vibrio logei]
          Length = 279

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 90/288 (31%), Positives = 145/288 (50%), Gaps = 12/288 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS+++ +T+ R+  IF Q +  G+P +PL       +  GT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKVELTINRRGEIFQQIYCHGVPQAPLAVIG-TTDTTGTK 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F P  + F +   F    L K  +  ++L+  V       +E        + + F F 
Sbjct: 60  IRFWPSDQTFAN-IEFVYDILAKRLRELSFLNSGVSIRLQDMRE------EDKSDHFMFE 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+K ++     N++ +  +IF    E+K      VE A+ W +     I  Y N I   
Sbjct: 113 GGIKAFVTHLNRNKTPVHQKIFYFDAERK-EDGIVVEVAMQWNDSYQENIFCYTNNIPQR 171

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GG H SG R ALTR +  + +      K   S   DD       ++SV + +P+F+ QT
Sbjct: 172 DGGAHLSGFRSALTRTLNSFMDKEGFSKKAKSSASGDDAREGLTAVVSVKVPDPKFSSQT 231

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           K KLVS + +  VE+A+ +    +L +NP EA  +   +I+ +  R  
Sbjct: 232 KDKLVSSEVKSAVESAMNEKLAEFLAENPGEAKMVCSKIIDAARAREA 279


>gi|30793688|gb|AAM52906.1| DNA gyrase subunit beta [Aeromonas caviae]
 gi|30793704|gb|AAM52914.1| DNA gyrase subunit beta [Aeromonas caviae]
          Length = 320

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 116/332 (34%), Positives = 176/332 (53%), Gaps = 16/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEILAKRLREL 58

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 59  SFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 111

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 112 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSK 168

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 169 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLEN 228

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 229 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 288

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 289 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 320


>gi|328926666|gb|AEB66891.1| DNA gyrase subunit B [Pseudomonas flectens]
          Length = 302

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 83/282 (29%), Positives = 148/282 (52%), Gaps = 14/282 (4%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +L +T+ R+  +  Q +  G+P  PL    +     GT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSQKLELTIRREGKVHQQTYVHGVPQQPLAVVGET-EASGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           ++ F P  + F +   F+   L K  +  ++L+  V    +  +         + + +++
Sbjct: 60  QVRFWPSYETFTNVIDFEYDILAKRLRELSFLNSGVSIRLTDKR-------TDKSDHYHY 112

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG+K +++   +N++ I S +F   T K       VE A+ W +     I  + N I  
Sbjct: 113 EGGIKAFVEYLNKNKTPIHSHVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQ 169

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ Q
Sbjct: 170 RDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQ 229

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           TK KLVS + +  VE+ + +    YL++NP +A  ++  +I+
Sbjct: 230 TKDKLVSSEVKSAVESQMNELLAEYLLENPTDAKIVVGKIID 271


>gi|295148903|gb|ADF80937.1| DNA gyrase subunit B [Vibrio sp. MA35]
          Length = 275

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 85/285 (29%), Positives = 145/285 (50%), Gaps = 13/285 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVGISVVNALS+++ +T+ R   I +Q +  G+P  PL++     +  GT++
Sbjct: 1   YKVSGGLHGVGISVVNALSEKVELTIHRNGKIHTQTYHHGVPDEPLKEIGDTED-SGTKV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F    L K  +  ++L+  V      ++E        ++  + + G
Sbjct: 60  RFWPSAETFTN-IEFVYEILAKRLRELSFLNSGVSIHLRDEREDN------KQNHYMYDG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G++ ++     N++ I  ++F    E++     TVE A+ W +     I  + N I   +
Sbjct: 113 GIQAFVTHLNRNKTPIHEKVFHFVQERED--GITVEVALQWNDGFQESIFCFTNNIPQRD 170

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R ALTR +  Y +      K   S   DD       ++SV + +P+F+ QTK
Sbjct: 171 GGTHLAGFRAALTRTLNSYMDKEGYSKKAKTSASGDDAREGLTAVISVKVPDPKFSSQTK 230

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
            KLVS + +  VE  + +    YL ++P EA  +   +I+ +  R
Sbjct: 231 DKLVSSEVKSAVETTMGEKLGDYLAEHPNEAKTICTKIIDAARAR 275


>gi|30793700|gb|AAM52912.1| DNA gyrase subunit beta [Aeromonas enteropelogenes]
 gi|30793710|gb|AAM52917.1| DNA gyrase subunit beta [Aeromonas enteropelogenes]
          Length = 320

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 116/332 (34%), Positives = 175/332 (52%), Gaps = 16/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTL-FHYEILAKRLREL 58

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L   V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 59  SFLKSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 111

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 112 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSK 168

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 169 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLEN 228

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 229 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 288

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 289 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 320


>gi|270669237|ref|ZP_06222585.1| DNA gyrase, B subunit [Haemophilus influenzae HK1212]
 gi|270316596|gb|EFA28421.1| DNA gyrase, B subunit [Haemophilus influenzae HK1212]
          Length = 165

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 76/144 (52%), Positives = 104/144 (72%), Gaps = 1/144 (0%)

Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              RK A+    LPGKLADC +     +EL++VEGDSAGGSAK  R+R  QA+LPL+GKI
Sbjct: 15  MTRRKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKI 74

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLL 555
           LNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LL
Sbjct: 75  LNVEKARFDKMLSSQEVGTLITALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLL 134

Query: 556 LTFFYQEMYDLIEQKHLFLISPPL 579
           LTFFY++M +LIE+ ++++  PPL
Sbjct: 135 LTFFYRQMPELIERGYVYIAQPPL 158


>gi|307343760|emb|CBJ19485.1| gyrase B subunit [Micromonospora chokoriensis]
          Length = 332

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 98/337 (29%), Positives = 172/337 (51%), Gaps = 9/337 (2%)

Query: 173 VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQ 232
           + +   ++ Q+++   P    +   +  ++ G+ ++F PDP +F     FD   + +  Q
Sbjct: 2   IHKSGFVWRQQYTNSKPSPLEK--GETTDRSGSAVSFWPDPDVFETV-DFDFQTIYRRLQ 58

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             A+L+  ++     ++   E+ G   +  FY+ GG+  +++    +++ I   +     
Sbjct: 59  EMAFLNRALRIHLLDERVAEEEDGRQREVTFYYEGGISDFVRHLNASKNPIHKTVVEFGA 118

Query: 293 EKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN 351
           E++G    +VE A+ W E     + ++ NTI T EGGTHE G R ALT  + +Y    + 
Sbjct: 119 EEEG---MSVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRSALTSVVNRYGTDKKL 175

Query: 352 KR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            +    +  +D+      I+SV +  P+F GQTKTKL +   +  V+    +    +  +
Sbjct: 176 LKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCNEWLVDWFDR 235

Query: 411 NPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           NP EA  ++ +           ++ ++   RK+ +    +PGKLADC       +E+FIV
Sbjct: 236 NPAEAKMIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTDPRESEVFIV 295

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506
           EGDSAGGSAKQ R+   QA+LP+RGKILNV  A  ++
Sbjct: 296 EGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDR 332


>gi|164456635|dbj|BAF97810.1| gyrase B subunit [Vibrio aestuarianus]
          Length = 278

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 87/287 (30%), Positives = 151/287 (52%), Gaps = 12/287 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+++ +T+ R+  IF Q +  G+P +PL    K     G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKVELTIKRKGEIFQQIYHHGVPQAPLAVIGKTEE-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           TRI F P  + F +   F    L K  +  ++L+  V    + ++E        + + F 
Sbjct: 60  TRIRFWPSEETFTN-IEFHYEILAKRLRELSFLNSGVSIKLTDERE------EDKSDHFM 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           F GG++ +++    N++ I  +IF     ++     TVE A+ W +     +  + N I 
Sbjct: 113 FEGGIRAFVEHLNRNKTPIHQKIFYFDHTRE-EDGITVEVAMQWNDGFQEGVYCFTNNIP 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ 
Sbjct: 172 QRDGGTHLAGFRGALTRTLNNFMDKEGYSKKAQAATSGDDAREGLTAVVSVKVPDPKFSS 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           QTK KLVS + +  VE+A+ +    +L++NP EA  +   +I+ +  
Sbjct: 232 QTKDKLVSSEVKSAVESAMSEKLSEFLIENPTEAKIVCGKIIDAARA 278


>gi|30793654|gb|AAM52889.1| DNA gyrase subunit beta [Aeromonas allosaccharophila]
 gi|30793684|gb|AAM52904.1| DNA gyrase subunit beta [Aeromonas veronii bv. sobria]
 gi|30793722|gb|AAM52923.1| DNA gyrase subunit beta [Aeromonas sp. 520]
 gi|30793724|gb|AAM52924.1| DNA gyrase subunit beta [Aeromonas allosaccharophila]
 gi|30793734|gb|AAM52929.1| DNA gyrase subunit beta [Aeromonas sp. 531c]
 gi|30793746|gb|AAM52935.1| DNA gyrase subunit beta [Aeromonas allosaccharophila]
 gi|34420930|gb|AAQ67710.1| DNA gyrase subunit beta [Aeromonas sp. 'Isolate 280']
 gi|37931157|gb|AAP69939.1| DNA gyrase subunit beta [Aeromonas sp. 480]
          Length = 320

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 115/332 (34%), Positives = 176/332 (53%), Gaps = 16/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++        GT + F P P IF D   +    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFTDTL-YHYEILAKRLREL 58

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 59  SFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 111

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 112 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSK 168

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 169 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLEN 228

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 229 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 288

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 289 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 320


>gi|89276710|gb|ABD66576.1| gyrase B [Leifsonia shinshuensis]
          Length = 326

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 100/322 (31%), Positives = 156/322 (48%), Gaps = 16/322 (4%)

Query: 232 QSKAYLSGRVKTCWSCDK-----------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
           Q  A+L+  ++     ++           E   +   P  + F +  GL  Y+      +
Sbjct: 2   QQMAFLNKGLRISLRDERAPEVEPVEGEVEEEAEVFAPRSDVFLYERGLTDYVHYLNAAK 61

Query: 281 SLISSEIFTGKTEKKGTHR-GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
                       E + T R   +E A+ W       + +Y NTI T EGGTHE G R AL
Sbjct: 62  KAEVVHDEIISFESEDTDRKIALEVAMQWTTSYNESVFTYANTINTHEGGTHEEGFRAAL 121

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           T  + +YA       ++  ++  +D+      ++SV + EP+F GQTKTKL + +A+  V
Sbjct: 122 TTLVNRYAREKNILKEKDDNLSGEDVREGLTAVISVKLSEPQFEGQTKTKLGNTEAKAFV 181

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLAD 455
           +  + D    +  +NP +A +++   +  +  R+  RK RE  R+  +     +PGKL D
Sbjct: 182 QKIVGDQLGDWFDRNPNQAKEIIRKALSAATARIAARKARETARRKGLLESGGMPGKLKD 241

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C+      +E+FIVEGDSAGGSA Q RN   QA+LPLRGKILNV  A  ++   N ++  
Sbjct: 242 CASKDPTLSEIFIVEGDSAGGSAVQGRNPETQAILPLRGKILNVEKARLDRALANNEVQA 301

Query: 516 LVQALGCRTRSQYREEDLRYEK 537
           ++ A G      +  E  RY K
Sbjct: 302 MITAFGAGIGEDFNPEKARYHK 323


>gi|290795089|gb|ADD64560.1| DNA gyrase B [Vibrio cyclitrophicus]
          Length = 278

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 87/288 (30%), Positives = 146/288 (50%), Gaps = 13/288 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +  G P +PL       +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I F P  + F +   F    L K  +  ++L+  V       +E        + + F 
Sbjct: 60  TEIRFWPSEETFNN-IEFHYDILAKRLRELSFLNSGVSIKLIDKRE------EDKMDHFE 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG++ +++    N++ I  +IF    E++     TVE A+ W +     I  + N I 
Sbjct: 113 YEGGIQAFVEHLNTNKTPIIQKIFHFDHERED--GITVEVAMQWNDGYQENIYCFTNNIP 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GG H +G R ALTR +  + +      K   S   DD       I+SV + +P+F+ 
Sbjct: 171 QRDGGAHLAGFRGALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSS 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           QTK KLVS + +  VE+ + +    +L++NP EA  +   +I+ +  R
Sbjct: 231 QTKDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARAR 278


>gi|92919029|gb|ABE96861.1| DNA gyrase subunit B [Aeromonas allosaccharophila]
          Length = 323

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 115/335 (34%), Positives = 178/335 (53%), Gaps = 16/335 (4%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   +    L K 
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFTDTL-YHYEILAKR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F  
Sbjct: 59  LRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHF 111

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +  
Sbjct: 112 TTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKE 168

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +
Sbjct: 169 DYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADF 228

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
           L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL
Sbjct: 229 LLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSEL 288

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           +IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  
Sbjct: 289 YIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 323


>gi|190148834|gb|ACE63392.1| DNA gyrase B subunit [Pseudonocardia asaccharolytica]
          Length = 346

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 110/352 (31%), Positives = 180/352 (51%), Gaps = 20/352 (5%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS  L V +     ++ Q++ R  P    +   +   + GT ITF  DP +F     ++
Sbjct: 1   ALSVALDVEIHSAGKVWRQRYDRSRPGPLRK--GEDTARSGTSITFWADPDVFETTF-YN 57

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKE-IAEKYGIPEKE---------EFYFPGGLKTYL 273
              + +  Q  A+L+  +      ++   +++   P+ E          F++PGGL+ ++
Sbjct: 58  LETISRRLQEMAFLNKGLTIVLRDERNGHSDEQAEPDAEGYVAKIKETTFHYPGGLEDFV 117

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
                ++  I  ++   +   +      VE A+ W       + ++ NTI T EGGTHE 
Sbjct: 118 AHINRSKDPIHKKLVAFQAATENHQ---VEVAMQWNSGYTESVYTFANTINTHEGGTHEE 174

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALT  + +YA   +    +  ++  DD+      I+SV ++EP+F GQTKTKL + 
Sbjct: 175 GFRAALTSTVNRYARDKKLLKDKDPALSGDDIREGLAAIVSVKVKEPQFEGQTKTKLGNT 234

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449
           + +  V+    +    +L +NP EA  ++   +  ++ R+  RK RE V RK+A     L
Sbjct: 235 EVKSFVQRVSNEWLADWLERNPTEAKTIVNKAVSSAQARIAARKARELVRRKSAGDIGGL 294

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           PGKLADC  +    +E++IVEGDSAGGSAK  R+   QA+LP+RGKI+NV  
Sbjct: 295 PGKLADCRSSDPSRSEVYIVEGDSAGGSAKSGRDSMFQAILPIRGKIINVEK 346


>gi|164456629|dbj|BAF97807.1| gyrase B subunit [Photobacterium rosenbergii]
          Length = 276

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 83/286 (29%), Positives = 147/286 (51%), Gaps = 13/286 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS+++ +T+ R  +I  Q +  G P +PL    +     GTR
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKVELTINRGGSIHQQVYHHGEPQAPLGIIGETEK-TGTR 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F P  + F +   F    L K  +  ++L+  V      ++E        +++ F + 
Sbjct: 60  IRFWPSAETFSN-IEFQYEILAKRLRELSFLNSGVSIKLIDERE------EDKQDHFMYE 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG++ +++    N++ I  ++F  +  ++      VE A+ W +     I  + N I   
Sbjct: 113 GGIRAFVEHLNRNKTPIHPKVFHFEFTRED--GIGVEVAMQWNDGFQENIYCFTNNIPQR 170

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QT
Sbjct: 171 DGGTHLAGFRGALTRTLNNFMDKEGYSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQT 230

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           K KLVS + +  VE+ + +    +L++NP +A  +   +I+ S  R
Sbjct: 231 KDKLVSSEVKPAVESTMGEKLSEFLLENPADAKTVCTKIIDASRAR 276


>gi|30793690|gb|AAM52907.1| DNA gyrase subunit beta [Aeromonas veronii]
 gi|92918998|gb|ABE96846.1| DNA gyrase subunit B [Aeromonas veronii]
 gi|92919000|gb|ABE96847.1| DNA gyrase subunit B [Aeromonas veronii]
 gi|92919002|gb|ABE96848.1| DNA gyrase subunit B [Aeromonas veronii]
 gi|92919004|gb|ABE96849.1| DNA gyrase subunit B [Aeromonas veronii]
 gi|194273622|gb|ACF37509.1| GyrB [Aeromonas veronii]
 gi|194273624|gb|ACF37510.1| GyrB [Aeromonas veronii]
 gi|194273626|gb|ACF37511.1| GyrB [Aeromonas veronii]
 gi|194273628|gb|ACF37512.1| GyrB [Aeromonas veronii]
 gi|194273630|gb|ACF37513.1| GyrB [Aeromonas veronii]
 gi|194273632|gb|ACF37514.1| GyrB [Aeromonas veronii]
          Length = 320

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 116/332 (34%), Positives = 176/332 (53%), Gaps = 16/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPAIFSDTL-FHYEILAKRLREL 58

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 59  SFLNSGVSIRLQDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 111

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 112 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSK 168

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 169 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLEN 228

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 229 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 288

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 289 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 320


>gi|30793664|gb|AAM52894.1| DNA gyrase subunit beta [Aeromonas media]
 gi|30793748|gb|AAM52936.1| DNA gyrase subunit beta [Aeromonas media]
 gi|34420924|gb|AAQ67707.1| DNA gyrase subunit beta [Aeromonas sp. 741]
 gi|34420926|gb|AAQ67708.1| DNA gyrase subunit beta [Aeromonas sp. 738]
          Length = 320

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 115/332 (34%), Positives = 176/332 (53%), Gaps = 16/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++        GT + F P P IF D   +    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFTDTL-YHYEILAKRLREL 58

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 59  SFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 111

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 112 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSK 168

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 169 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLEN 228

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 229 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 288

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 289 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 320


>gi|58465054|gb|AAW78425.1| DNA topoisomerase II beta subunit [Shewanella canadensis]
          Length = 337

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 120/346 (34%), Positives = 179/346 (51%), Gaps = 15/346 (4%)

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           V ALS  L +T+ R   ++ Q ++ G+P  P+++     N  GT I F P    F D   
Sbjct: 1   VYALSHSLQMTIRRDGKLYEQFYTHGVPDEPIKEIGDATN-TGTEIRFWPSEDTFSDTL- 58

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F    L K  +  ++L+  V      +++          E F + GG+  ++     N++
Sbjct: 59  FHFDILAKRVRELSFLNSGVGVRLVDERDN-------RNEFFKYDGGISAFVDYLNVNKT 111

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            ++ ++F    E++     TVE A+ W +     I  + N I   +GGTH +G R ALTR
Sbjct: 112 PVNKDVFHFIQERED--GITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRGALTR 169

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +  Y E      K   S   DD       ++SV + +P+F+ QTK KLVS + +  VE 
Sbjct: 170 NLNNYMEKEGYNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQ 229

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCS 457
            + +    YL+++P EA  ++  +I+ S  R   RK R    RK A+    LPGKLADC 
Sbjct: 230 TMGEQLGDYLIEHPNEAKLIVGKIIDASRAREAARKAREMTRRKGALDLGGLPGKLADCQ 289

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  A 
Sbjct: 290 EKDPAHSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 335


>gi|146431138|gb|ABQ40552.1| DNA gyrase B subunit [Vibrio harveyi]
 gi|146431196|gb|ABQ40581.1| DNA gyrase B subunit [Vibrio harveyi]
          Length = 275

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 85/285 (29%), Positives = 148/285 (51%), Gaps = 13/285 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       ++ GT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQ 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F P  + F +   F    L K  +  ++L+  V      ++E        + + F F 
Sbjct: 60  IRFWPSAETFSN-TEFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KSDHFMFE 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG++ +++    N++ I  +IF    E++     +VE A+ W +     I  + N I   
Sbjct: 113 GGIQAFVEHLNTNKTPIIEKIFHFDFERED--GISVEVAMQWNDGFQENIYCFTNNIPQR 170

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QT
Sbjct: 171 DGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQT 230

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           K KLVS + +  VE+A+ +    +L++NP EA  +   +I+ +  
Sbjct: 231 KDKLVSSEVKSAVESAMGEKLSEFLIENPAEAKMVCSKIIDAARA 275


>gi|57868972|gb|AAW57479.1| gyrase B [Candidatus Hamiltonella defensa]
          Length = 307

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 100/315 (31%), Positives = 159/315 (50%), Gaps = 15/315 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS++L +T++R+ +I  Q +  G P +PL+   K     G R+ F 
Sbjct: 1   SGGLHGVGVSVVNALSEKLELTISREGSIHQQTYVMGEPQAPLKVMGKT-ELTGXRVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  K F ++  F    L K  +  ++L+  V  C    +   EK        F++ GG++
Sbjct: 60  PSLKTFTNQTEFQYDILAKRLRELSFLNSGVFICLEDKRNDQEK-------HFHYEGGIQ 112

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            ++    +N++ I  ++F   T K       VE A+ W +     I  + N I   +GGT
Sbjct: 113 AFVTYLNKNKTPIHPKVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGT 169

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R A+TR +  Y E      K  I+   DD     + ++SV + +P+F+ QTK KL
Sbjct: 170 HLVGFRXAMTRTMNSYMEKEGFSKKSKINATGDDAREGLIAVISVKVPDPKFSSQTKDKL 229

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRK 446
           VS + +  VE  + +    YL++NP +A  ++  +I+        R+ +    RK A+  
Sbjct: 230 VSSEVKTAVETLMNEKLVEYLLENPSDAKTIVNKIIDAARAREAARKAREMTRRKGALDL 289

Query: 447 LRLPGKLADCSQNIA 461
             LPGKLADC +   
Sbjct: 290 AGLPGKLADCQERDP 304


>gi|322875022|gb|ADX20834.1| DNA gyrase subunit B [Legionella feeleii]
          Length = 208

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/219 (32%), Positives = 119/219 (54%), Gaps = 14/219 (6%)

Query: 113 GRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVT 172
           GRGIPV+ H K   +S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+ELH++
Sbjct: 1   GRGIPVDIH-KEEGRSAAEVIMTILHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLS 59

Query: 173 VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQ 232
           + R   +  Q +  G+P +PL          GT++ F+P    F +   F    L K  +
Sbjct: 60  IHRNGKLHEQHYRNGVPDAPLAVTGDAT-ATGTQVWFKPSANTFNN-IEFHYDILAKRLR 117

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             ++L+  V      ++         +++ F + GG++ +++    N++ I   +F+   
Sbjct: 118 ELSFLNSGVCIYLYDERSQ-------KQDTFRYEGGIQAFVEHLNRNKTPIMPIVFSLSG 170

Query: 293 EKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
            K      +V+ ++ W +     I  + N I   +GGTH
Sbjct: 171 VKDNI---SVDLSLQWNDSFQETIFCFTNNIPQRDGGTH 206


>gi|324507090|gb|ADY43013.1| DNA topoisomerase 2 [Ascaris suum]
          Length = 625

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 10/148 (6%)

Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQ 598
           ++MTD D DGAHI  L++ F +     LI    +     PL +  +G++ +  +     +
Sbjct: 1   MVMTDQDEDGAHIRGLIINFLHSFWPSLIRSDFIQYFVTPLLKARRGSEVISFYSNSEFE 60

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
           K   +F      K  I  +KGLG   A + +E   + ++  +  V         +  + +
Sbjct: 61  KWKRDFPNS--KKYSIKYYKGLGTSSAEEAREYFAEMDRHRVQFV--YGGEEDDESIRLA 116

Query: 659 INKLMGTKADERFKFIQERASFIDDVGT 686
            +K   ++AD+R  +I   A   ++  +
Sbjct: 117 FDK---SRADDRKIWI---AHTSENTDS 138


>gi|110224994|dbj|BAE97486.1| DNA gyrase subunit B [Streptococcus oralis]
          Length = 300

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 94/282 (33%), Positives = 145/282 (51%), Gaps = 12/282 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS +L V V +   I  Q++ RG  ++ LE      +K G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PDP+IF +   FD  +L K  Q  A+L+  ++   +  +E  E     + + ++
Sbjct: 60  TTVHFTPDPEIFTETTTFDFEKLNKRIQELAFLNRGLRISITDKREGLE-----QTKHYH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+ +Y++   EN+ +I         E       TVE A+ +     E   S+ N I 
Sbjct: 115 YEGGIASYVEYINENKDVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G R ALTR I  YA   +  +    ++  +D+      ++SV    P+F G
Sbjct: 172 THEGGTHEQGFRTALTRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
           QTKTKL + +  +       D F  +L++NP  A +++E  I
Sbjct: 232 QTKTKLGNSEVVKITNRLFSDAFSDFLMENPQIAKRIVEKGI 273


>gi|259479043|dbj|BAI40069.1| DNA gyrase beta subunit [Aeromonas sp. GV16]
 gi|264685584|dbj|BAI49141.1| DNA gyrase beta subunit [Aeromonas sp. A10]
 gi|264685586|dbj|BAI49142.1| DNA gyrase beta subunit [Aeromonas sp. 67P24]
 gi|264685588|dbj|BAI49143.1| DNA gyrase beta subunit [Aeromonas sp. Y62]
 gi|264685590|dbj|BAI49144.1| DNA gyrase beta subunit [Aeromonas sp. AC9804]
 gi|264685592|dbj|BAI49145.1| DNA gyrase beta subunit [Aeromonas sp. AC0202]
 gi|264685594|dbj|BAI49146.1| DNA gyrase beta subunit [Aeromonas sp. GF1]
 gi|264685598|dbj|BAI49148.1| DNA gyrase beta subunit [Aeromonas sp. ATCC 19570]
 gi|264685600|dbj|BAI49149.1| DNA gyrase beta subunit [Aeromonas sp. ATCC 14715]
          Length = 319

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 115/331 (34%), Positives = 175/331 (52%), Gaps = 16/331 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEILAKRLREL 58

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 59  SFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 111

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 112 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSK 168

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 169 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLEN 228

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 229 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 288

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  
Sbjct: 289 GDSAGGSAKQGRNRKNQAILPLKGKILNVEK 319


>gi|321117368|dbj|BAJ72161.1| gyrase B [Erwinia sp. 'uzenensis']
          Length = 333

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 102/343 (29%), Positives = 173/343 (50%), Gaps = 15/343 (4%)

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
            R+  +  Q +  G+P + L    +  +  GTR+ F P  + F +   F+   L K  + 
Sbjct: 1   RREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRE 59

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            ++L+  V       ++        + + +++ GG+K +++   +N++ I    F   TE
Sbjct: 60  LSFLNSGVSIKLEDKRD-------GKNDHYHYEGGIKAFVEYLNKNKTPIHPNAFYFSTE 112

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350
           K G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +     
Sbjct: 113 KDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGXS 169

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            K  +S   DD     + ++SV + +P+F+ QTK KLV  + +  VE  + +    YL++
Sbjct: 170 KKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVXXEVKSAVEQQMNELLXEYLLE 229

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNR-KTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           +  +A  ++  +I+ +  R    + RE+ R K A+    LPGKLADC +       +++V
Sbjct: 230 HRGDAKIVVGKIIDAARAREAAPRAREMTRCKGALDLAGLPGKLADCQERDPALFXIYLV 289

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           EGD AGG AKQ RNR  QA+ PL+GKILNV     +K+  +Q+
Sbjct: 290 EGDFAGGFAKQGRNRKXQAIPPLKGKILNVEKTRFDKMLASQE 332


>gi|164456681|dbj|BAF97833.1| gyrase B subunit [Vibrio hispanicus]
          Length = 276

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 83/286 (29%), Positives = 150/286 (52%), Gaps = 13/286 (4%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS+++ +T+ R   + +Q +  G+P  PL    +  +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIRRGGQVHTQTYRHGVPQGPLSVIGET-DKS 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F P  + F +   F    L K  +  ++L+  V      ++E        + + F
Sbjct: 60  GTTVRFWPSDETFTN-IEFHYDILAKRLRELSFLNSGVSIKLIDERE------EDKNDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ ++     N++ I  ++F   +E+      +VE A+ W +     I  + N I
Sbjct: 113 MYEGGIQAFVTHLNRNKTPIHEKVFHFNSERDD--GISVEVAMQWNDGFQEGIFCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  + +      K   S   DD       ++SV + +P+F+
Sbjct: 171 PQRDGGTHLAGFRAALTRTLNTFMDKEGYSKKAKTSTSGDDAREGLTAVVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
            QTK KLVS + +  VE+A+ +  + +L ++P EA  +   +I+ +
Sbjct: 231 SQTKDKLVSSEVKSAVESAMGEKLNEFLAEHPTEAKIVCNKIIDAA 276


>gi|30793728|gb|AAM52926.1| DNA gyrase subunit beta [Aeromonas sp. 610]
          Length = 320

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 115/332 (34%), Positives = 176/332 (53%), Gaps = 16/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++        GT + F P P IF D   +    L K  +  
Sbjct: 1   RNGXVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFTDTL-YHYEILAKRLREL 58

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 59  SFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 111

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 112 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSK 168

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 169 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLEN 228

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 229 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 288

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 289 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 320


>gi|146431186|gb|ABQ40576.1| DNA gyrase B subunit [Vibrio harveyi]
          Length = 276

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 85/285 (29%), Positives = 148/285 (51%), Gaps = 13/285 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       ++ GT+
Sbjct: 2   SYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQ 60

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F P  + F +   F    L K  +  ++L+  V      ++E        + + F F 
Sbjct: 61  IRFWPSAETFSN-TEFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KSDHFMFE 113

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG++ +++    N++ I  +IF    E++     +VE A+ W +     I  + N I   
Sbjct: 114 GGIQAFVEHLNTNKTPIIEKIFHFDFERED--GISVEVAMQWNDGFQENIYCFTNNIPQR 171

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QT
Sbjct: 172 DGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQT 231

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           K KLVS + +  VE+A+ +    +L++NP EA  +   +I+ +  
Sbjct: 232 KDKLVSSEVKSAVESAMGEKLSEFLIENPAEAKMVCSKIIDAARA 276


>gi|33333782|gb|AAQ11992.1| topoisomerase II [Fusarium tricinctum]
          Length = 415

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 94/429 (21%), Positives = 174/429 (40%), Gaps = 30/429 (6%)

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAAR---LLKMTQSKAYLSGR 240
           ++  +      K    ++   TRITF+PD K FG + G D      L +           
Sbjct: 3   WTDNMQTVHKAKITSSKSADFTRITFKPDFKRFGMEDGIDDDLESLLYRRVYDMVGTIRG 62

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
           +K   + ++         + ++F     L      K  +     +   T + +K   H  
Sbjct: 63  IKVYLNNEQI--------KIKDFKAYCDLYAKSIAKERSNEEGGAPTCTVEMDKDKGH-P 113

Query: 301 TVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISD 360
             E   A  +   +  S+ N+I T  GGTH + +   +T+ + +   L + ++  S+  +
Sbjct: 114 RWEVGFAVSDGTFQQVSFVNSIATTSGGTHVNYVADQVTKHLLE--VLNKKRKGHSLKQN 171

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
            L       ++ +I  P F  QTK ++ +  +Q   +  L D F   + +     +  L+
Sbjct: 172 HLRNHIFIFINCYINNPAFTSQTKEQMTTKPSQFGSKCILGDDFLKKIAK-----SDALQ 226

Query: 421 WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
            +++ +E++  +   +    K +        +         H   L + EGDSA G A  
Sbjct: 227 NILDFAEKKADKMLAKGDGSKRSRVNNAKLVEANFAGTRRGHECTLILTEGDSAKGLAVS 286

Query: 481 AR---NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYE 536
            R   +     V PLRGK+LNV  A +E+I  N +I ++ Q LG + ++ Y +   LRY 
Sbjct: 287 GRAILDPDRIGVFPLRGKLLNVRDASTEQIAKNAEISNIKQLLGLKHKATYTDTKNLRYG 346

Query: 537 KVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK-HLFLISPPLFRITQG------TKSV 589
            ++IM D D DG+HI  LL+ F       L++          P+ ++ QG       +  
Sbjct: 347 HLMIMADQDHDGSHIKGLLINFLEVAYPSLLKIPDFFREFITPIVKVWQGPNPKKPQRLK 406

Query: 590 YAHDEEHKQ 598
               +   +
Sbjct: 407 SFFTQLEYE 415


>gi|259479053|dbj|BAI40074.1| DNA gyrase beta subunit [Aeromonas sp. TT2]
          Length = 319

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 115/331 (34%), Positives = 175/331 (52%), Gaps = 16/331 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEILAKRLREL 58

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 59  SFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 111

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 112 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSK 168

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 169 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLEN 228

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 229 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 288

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  
Sbjct: 289 GDSAGGSAKQGRNRKNQAILPLKGKILNVEK 319


>gi|164456685|dbj|BAF97835.1| gyrase B subunit [Vibrio kanaloae]
          Length = 277

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 84/287 (29%), Positives = 147/287 (51%), Gaps = 13/287 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q ++ G P +PL       ++ G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYNHGEPQAPLAIVGDT-DRTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I F P  + F +   +    L K  +  ++L+  V      ++E        + + F 
Sbjct: 60  TEIRFWPSEETFTN-IEYHYDILAKRLRELSFLNSGVSIRLIDERE------EDKMDHFE 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG++ +++    N++ I  +IF   +E+      TVE A+ W +     I  + N I 
Sbjct: 113 YEGGIQAFVEHLNTNKTPIIQKIFHFDSERDD--GITVEVAMQWNDGYQENIYCFTNNIP 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GG H +G R ALTR +  + +      K   S   DD       I+SV + +P+F+ 
Sbjct: 171 QRDGGAHLAGFRSALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSS 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           QTK KLVS + +  VE+ + +    +L++NP EA  +   +I+ +  
Sbjct: 231 QTKDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAARA 277


>gi|62633145|gb|AAX89531.1| DNA gyrase subunit B [Vibrio tapetis]
          Length = 316

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 98/326 (30%), Positives = 159/326 (48%), Gaps = 14/326 (4%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKF +++Y++S GLHGVG+S VNALS ++ +T+ RQ +   Q +  G P +PL      
Sbjct: 1   GGKFXDNSYKVSXGLHGVGVSXVNALSKQVDLTIHRQGSTHQQTYRHGEPDAPLGATGDT 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
               GT I F P  + F +   F    L K  +  ++L+  V      ++E        +
Sbjct: 61  EK-TGTIIRFWPSEETFTNVH-FHYEILAKRLRELSFLNSGVSIKLIDERE------EDK 112

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
            + F + GG + ++     N++ I  ++F    E++     +VE A+ W +     I  +
Sbjct: 113 MDHFCYEGGTQAFVDYLNTNKTPIIQKVFHFDYERED--GISVEVAMQWNDGYQENIFCF 170

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +G R ALTR +  + +      K   +   DD       I+SV + +
Sbjct: 171 TNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAIVSVKVPD 230

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQ 435
           P+F+ QTK KLVS + +  VE+A+ +    +L +NP EA  +   +I         R+ +
Sbjct: 231 PKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLXENPSEAKIVCSKIIDAARARDAARKAR 290

Query: 436 REVNRKTAIRKLRLPGKLADCSQNIA 461
               RK A+    LPGKLADC +   
Sbjct: 291 EMTRRKGALDLAGLPGKLADCQEXDP 316


>gi|30793660|gb|AAM52892.1| DNA gyrase subunit beta [Aeromonas jandaei]
          Length = 320

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 117/332 (35%), Positives = 175/332 (52%), Gaps = 16/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEILAKRLREL 58

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K  ++   +N++ I  ++F   TE+
Sbjct: 59  SFLNSGVSIRLMDERDGRE-------AHFCYEGGIKALVEYLNQNKTPIHPKVFHFTTEQ 111

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y E      
Sbjct: 112 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMEKEDYSK 168

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 169 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLEN 228

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 229 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 288

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 289 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 320


>gi|30793714|gb|AAM52919.1| DNA gyrase subunit beta [Aeromonas sobria]
          Length = 320

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 115/332 (34%), Positives = 176/332 (53%), Gaps = 16/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++  +     GT + F P P IF D   +    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGESSG-TGTEVRFWPSPTIFTDTL-YHYEILAKRLREL 58

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE 
Sbjct: 59  SFLNSGVSIRLRDERDGRE-------VHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEH 111

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 112 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSK 168

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 169 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLEN 228

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 229 PSDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 288

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 289 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 320


>gi|296041311|gb|ADG85649.1| DNA gyrase subunit B [Acinetobacter sp. 2P07PC]
 gi|296041313|gb|ADG85650.1| DNA gyrase subunit B [Acinetobacter sp. 2P07PB]
          Length = 348

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 118/359 (32%), Positives = 180/359 (50%), Gaps = 16/359 (4%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            I  Q+ + G P   L+    V    GT + F P  + F     F+   L +  +  ++L
Sbjct: 2   QIHQQENTHGDPDYLLKIVGDV-ETTGTMVRFWPSTETFSQTI-FNVDILARRLRELSFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V+     ++   E         F + GGL  +++   + ++ +S         + G 
Sbjct: 60  NAGVRIVIRDERVALE-------HVFDYEGGLSEFVKYITQGKTHLSEIFHFTSQAENGI 112

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               VE A+ W +     +  + N I   +GGTH  G R ALTRG+  Y E      K  
Sbjct: 113 ---GVEVALQWTDTYQENVRCFANNIPQKDGGTHLVGFRAALTRGLNSYMENENFLKKEK 169

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +++  DD       I+SV + +P+F+ QTK KLVS + +  VE A+   F  YL++NP  
Sbjct: 170 VAVTGDDAREGLTAIVSVKVPDPKFSSQTKEKLVSSEVKPAVEQAMNKAFSEYLLENPQA 229

Query: 415 ATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  +   +I+ +  R   RK      RK+A+    LPGKLADC +     +EL++VEGDS
Sbjct: 230 AKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKDPALSELYLVEGDS 289

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           AGGSAKQARNR  QA+LPL+GKILNV  A  +K+ ++Q++  L+ ALGC    +    D
Sbjct: 290 AGGSAKQARNRKMQAILPLKGKILNVERARFDKMISSQEVGTLITALGCGIGREDYNPD 348


>gi|30793678|gb|AAM52901.1| DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 320

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 114/332 (34%), Positives = 175/332 (52%), Gaps = 16/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEILAKRLREL 58

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 59  SFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 111

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 112 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSK 168

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ + K KLVS + +  VE A+ +    +L++N
Sbjct: 169 KAKSAASGDDVREGLIAVISVKVPDPKFSSRPKDKLVSSEVKTAVEQAMGEKLADFLLEN 228

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 229 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 288

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 289 GDSAGGSAKQGRNRXNQAILPLKGKILNVEKA 320


>gi|259479047|dbj|BAI40071.1| DNA gyrase beta subunit [Aeromonas sp. Kochi]
 gi|264685602|dbj|BAI49150.1| DNA gyrase beta subunit [Aeromonas sp. ATCC 15467]
          Length = 319

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 115/331 (34%), Positives = 175/331 (52%), Gaps = 16/331 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTL-FHYEILAKRLREL 58

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 59  SFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 111

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 112 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSK 168

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 169 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLEN 228

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 229 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 288

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  
Sbjct: 289 GDSAGGSAKQGRNRKNQAILPLKGKILNVEK 319


>gi|30793650|gb|AAM52887.1| DNA gyrase subunit beta [Aeromonas veronii bv. sobria]
 gi|30793674|gb|AAM52899.1| DNA gyrase subunit beta [Aeromonas veronii bv. veronii]
          Length = 320

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 115/332 (34%), Positives = 176/332 (53%), Gaps = 16/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPAIFSDTL-FHYEILAKRLREL 58

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 59  SFLNSGVSIRLQDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 111

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 112 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSK 168

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 169 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLEN 228

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 229 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 288

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR +QA+LPL+GKILNV  A
Sbjct: 289 GDSAGGSAKQGRNRKDQAILPLKGKILNVEKA 320


>gi|30793666|gb|AAM52895.1| DNA gyrase subunit beta [Aeromonas caviae]
          Length = 319

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 115/331 (34%), Positives = 175/331 (52%), Gaps = 16/331 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEILAKRLREL 58

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 59  SFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 111

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 112 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSK 168

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 169 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLEN 228

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 229 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 288

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  
Sbjct: 289 GDSAGGSAKQGRNRKNQAILPLKGKILNVEK 319


>gi|30793652|gb|AAM52888.1| DNA gyrase subunit beta [Aeromonas eucrenophila]
          Length = 321

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 113/332 (34%), Positives = 175/332 (52%), Gaps = 15/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++     +  GT + F P P IF D   +    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFSDTL-YHYEILAKRLREL 59

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + G +K +++   +N++ I  ++F   TE+
Sbjct: 60  SFLNSGVSIRLQDERDGRE-------VHFCYEGAIKAFVEYLNQNKTPIHPKVFHFSTEQ 112

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE  + W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 113 DGI---GVEVPMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSK 169

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 170 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLAEFLLEN 229

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 230 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 289

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 321


>gi|323689894|dbj|BAJ78241.1| DNA gyrase subunit B [Shewanella benthica]
          Length = 305

 Score =  154 bits (388), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 83/283 (29%), Positives = 148/283 (52%), Gaps = 13/283 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS++L +T+ R   ++ Q ++ G P +P+++     +  G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLQLTIRRNGKLYEQFYTSGEPDAPIKEIGDATS-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F    L+K  +  ++L+  V      +++  +       E F 
Sbjct: 60  TELRFWPSHETFTNNIEFHFDILVKRVRELSFLNSGVGIRLIDERDNRD-------EFFQ 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  ++     N++ ++ ++F    E+      TVE A+ W +     I  + N I 
Sbjct: 113 YQGGISAFVDYLNVNKTPVNKDVFHFIHERDD--GITVEVAMQWNDGFQENIFCFTNNIP 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  Y E      K   S   DD       ++SV + +P+F+ 
Sbjct: 171 QRDGGTHLAGFRGALTRNLNAYMEREGYNKKGKTSATGDDAREGLTAVVSVKVPDPKFSS 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           QTK KLVS + +  VE  + +    YL+++P EA  ++  +I+
Sbjct: 231 QTKDKLVSSEVKSAVEQTMGEKLGDYLMEHPNEARLIVGKIID 273


>gi|295148899|gb|ADF80935.1| DNA gyrase subunit B [Vibrio sp. MA12]
 gi|295148901|gb|ADF80936.1| DNA gyrase subunit B [Vibrio sp. MA17]
          Length = 275

 Score =  154 bits (388), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 84/285 (29%), Positives = 145/285 (50%), Gaps = 13/285 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVGISVVNALS+++ +T+ R   I +Q +  G+P  PL++     +  GT+
Sbjct: 1   SYKVSGGLHGVGISVVNALSEKVELTIHRNGKIHTQTYHHGVPDEPLKEIGDTED-SGTK 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F P  + F +   F    L K  +  ++L+  V      ++E        ++  + + 
Sbjct: 60  VRFWPSAETFTN-IEFVYEILAKRLRELSFLNSGVSIHLRDEREDN------KQNHYMYD 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG++ ++     N++ I  ++F    E++     TVE A+ W +     I  + N I   
Sbjct: 113 GGIQAFVTHLNRNKTPIHEKVFHFVQERED--GITVEVALQWNDGFQESIFCFTNNIPQR 170

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R ALTR +  Y +      K   S   DD       ++SV + +P+F+ QT
Sbjct: 171 DGGTHLAGFRAALTRTLNSYMDKEGYSKKAKTSASGDDAREGLTAVISVKVPDPKFSSQT 230

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           K KLVS + +  VE  + +    YL ++P EA  +   +I+ +  
Sbjct: 231 KDKLVSSEVKSAVETTMGEKLGDYLAEHPNEAKTICTKIIDAARA 275


>gi|37931159|gb|AAP69940.1| DNA gyrase subunit beta [Aeromonas sp. 57]
          Length = 320

 Score =  154 bits (388), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 115/332 (34%), Positives = 176/332 (53%), Gaps = 16/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++        GT + F P P IF D   +    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFTDTL-YHYEILAKRLREL 58

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 59  SFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 111

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 112 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSK 168

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 169 KAKSAASGDDVREGLIAVISVKVPDPKFSFQTKDKLVSSEVKTAVEQAMGEKLADFLLEN 228

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 229 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 288

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 289 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 320


>gi|259479051|dbj|BAI40073.1| DNA gyrase beta subunit [Aeromonas sp. TT1]
          Length = 319

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 116/331 (35%), Positives = 175/331 (52%), Gaps = 16/331 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTL-FHYEILAKRLREL 58

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 59  SFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 111

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQN 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y   E    
Sbjct: 112 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYLDKEDYSK 168

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 169 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLEN 228

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 229 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 288

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  
Sbjct: 289 GDSAGGSAKQGRNRKNQAILPLKGKILNVEK 319


>gi|34420922|gb|AAQ67706.1| DNA gyrase subunit beta [Aeromonas veronii bv. sobria]
 gi|264685596|dbj|BAI49147.1| DNA gyrase beta subunit [Aeromonas sp. GMA0361]
          Length = 319

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 114/331 (34%), Positives = 175/331 (52%), Gaps = 16/331 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++        GT + F P P IF D   +    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFTDTL-YHYEILAKRLREL 58

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 59  SFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 111

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 112 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSK 168

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 169 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLEN 228

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 229 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 288

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  
Sbjct: 289 GDSAGGSAKQGRNRKNQAILPLKGKILNVEK 319


>gi|164456715|dbj|BAF97850.1| gyrase B subunit [Vibrio pectenicida]
          Length = 277

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 87/287 (30%), Positives = 144/287 (50%), Gaps = 13/287 (4%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVGISVVNALS ++ + + R   I +Q +  G P +PL       +K GT
Sbjct: 1   NSYKVSGGLHGVGISVVNALSRQVSLKICRGGKIHTQTYHHGEPQAPLSVTGDT-DKTGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            I F P    F +   F    L K  +  ++L+  V      D+E        + + F +
Sbjct: 60  EIRFWPSEGTFTN-TEFHYDILAKRLRELSFLNSGVSIKLIDDRE------EDKSDHFMY 112

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG++ +++    N++ I  ++F   TE++      VE A+ W +     I  + N I  
Sbjct: 113 QGGIQAFVEHLNTNKTPIIEKVFHFNTERED--GIAVEVAMQWNDGFQENIYCFTNNIPQ 170

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GG H +G R ALTR I  + +      K   S   DD       ++SV + +P+F+ Q
Sbjct: 171 RDGGAHLAGFRAALTRTINSFMDKEGFSKKEKTSTSGDDAREGLTAVVSVKVPDPKFSSQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           TK KLVS + +  VE+ + +    +LV++P EA  +   +I+ +  R
Sbjct: 231 TKDKLVSSEVKSAVESVMGEKLSEFLVEHPNEAKIVCSKIIDAARAR 277


>gi|37931155|gb|AAP69938.1| DNA gyrase subunit beta [Aeromonas sp. 239]
          Length = 320

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 115/332 (34%), Positives = 176/332 (53%), Gaps = 16/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++        GT + F P P IF D   +    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFTDTL-YHYEILAKRLREL 58

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 59  SFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 111

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 112 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSK 168

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 169 KAKSAASGDDVREGLIAVISVKVPDPKFSFQTKDKLVSFEVKTAVEQAMGEKLADFLLEN 228

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 229 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 288

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 289 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 320


>gi|110224990|dbj|BAE97484.1| DNA gyrase subunit B [Streptococcus mitis]
          Length = 300

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 94/282 (33%), Positives = 145/282 (51%), Gaps = 12/282 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS +L V V +   I  Q++ RG  ++ LE      +K G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PDP+IF +   FD  +L K  Q  A+L+  ++   +  +E  E     + + ++
Sbjct: 60  TTVHFIPDPEIFTETTTFDFDKLNKRIQELAFLNRGLQISITDKREGLE-----QTKHYH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+ +Y++   EN+ +I         E       TVE A+ +     E   S+ N I 
Sbjct: 115 YEGGIASYVEYINENKDVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G R ALTR I  YA   +  +    ++  +D+      ++SV    P+F G
Sbjct: 172 THEGGTHEQGFRTALTRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
           QTKTKL + +  +       D F  +L++NP  A +++E  I
Sbjct: 232 QTKTKLGNSEVVKITNRLFSDAFSDFLMENPQIAKRIVEKGI 273


>gi|259479045|dbj|BAI40070.1| DNA gyrase beta subunit [Aeromonas sp. GV20]
 gi|259479049|dbj|BAI40072.1| DNA gyrase beta subunit [Aeromonas sp. Rameshwaram]
 gi|259479055|dbj|BAI40075.1| DNA gyrase beta subunit [Aeromonas sp. TT5]
          Length = 319

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 115/331 (34%), Positives = 175/331 (52%), Gaps = 16/331 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPAIFSDTL-FHYEILAKRLREL 58

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 59  SFLNSGVSIRLQDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 111

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 112 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSK 168

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 169 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLEN 228

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 229 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 288

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  
Sbjct: 289 GDSAGGSAKQGRNRKNQAILPLKGKILNVEK 319


>gi|37956505|gb|AAP15342.1| gyrase B [Geobacter chapelleii]
          Length = 310

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 91/279 (32%), Positives = 148/279 (53%), Gaps = 14/279 (5%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS  L + + R   +F Q + RG P++PLE     +  RGT++T
Sbjct: 8   QVSGGLHGVGVSVVNALSKWLELEIRRDGKVFRQSYRRGDPVAPLEMVGDTKK-RGTKVT 66

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F PD +IF          L +  +  A+L+  V+   S            + +EF++ GG
Sbjct: 67  FMPDEEIFET-TEISFDVLSQRLREMAFLNAGVRITISD------AXVDNKSQEFHYEGG 119

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           + ++++    +++ +  +    K EK G      E A+ + +    +I S+ N I T EG
Sbjct: 120 INSFVEYLNRSKTALHPKPIYFKGEKGGV---ETEVAMQYNDSYDEKIFSFANNINTHEG 176

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH +G +  LTR +  Y    +   K  +SI  DDL      ++SV I +P+F GQTKT
Sbjct: 177 GTHLAGFKAGLTRTMNSYVAANEMLKKEKVSISGDDLREGMTCVISVKIPQPQFEGQTKT 236

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           KL + + +  VE+ + +    +L +NP  A ++LE  I+
Sbjct: 237 KLGNSEVKGYVESLINEKLAQFLEENPQVAKRILEKSID 275


>gi|37931153|gb|AAP69937.1| DNA gyrase subunit beta [Aeromonas sp. 665c]
          Length = 320

 Score =  153 bits (387), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 116/332 (34%), Positives = 175/332 (52%), Gaps = 16/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEILAKRLREL 58

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 59  SFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 111

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 112 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNNYMDKEDYSK 168

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F  QTK KLVS + +  VE A+ +    +L++N
Sbjct: 169 KAKSAASGDDVREGLIAVISVKVPDPKFFFQTKDKLVSFEVKTAVEQAMGEKLADFLLEN 228

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 229 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 288

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 289 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 320


>gi|4514457|dbj|BAA75427.1| DNA gyrase subunit B [Acinetobacter johnsonii]
          Length = 303

 Score =  153 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 96/315 (30%), Positives = 156/315 (49%), Gaps = 16/315 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L +T+ R   I  Q++  G P+ PL       +  G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSRKLELTIHRAGHIHQQEYKHGDPVYPLTVVGDT-DMTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F     F+   L +  +  ++L+  V+     ++  AE         F 
Sbjct: 60  TTVRFWPSAETFSQTI-FNVDILARRLRELSFLNAGVRIVLRDERIHAE-------HVFD 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   + ++ ++         + G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLSEFVKYINQGKTHLNDIFHFTVQAENGI---GVEVALQWNDTYQENVRCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  +++  DD       I+SV + +P+F+ 
Sbjct: 169 QKDGGTHLAGFRAALTRGLNSYMENENLLKKEKVAVSGDDAREGLTAIVSVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNR 440
           QTK KLVS + +  VE A+   F  YL++NP  A  +   +I         R+ +    R
Sbjct: 229 QTKEKLVSSEVKPAVEQAMNKSFSEYLLENPQAAKSIAGKIIDAARARDAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLAD 455
           K+A+    LPGKLAD
Sbjct: 289 KSALDIAGLPGKLAD 303


>gi|85681951|gb|ABC73081.1| DNA gyrase subunit beta [Oceanimonas smirnovii]
          Length = 271

 Score =  153 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 84/282 (29%), Positives = 141/282 (50%), Gaps = 14/282 (4%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS++L +T+ R+N +  Q +  G P +PL          GT+I F P
Sbjct: 1   GGLHGVGVSVVNALSEKLQLTIWRKNKVHEQTYHHGEPQAPLTAVGDTTR-TGTQIRFWP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F D   F    L K  +  ++L+  V      +++  E         F + GG++ 
Sbjct: 60  SHETFTDTN-FHYDILAKRLRELSFLNSGVSIKLLDERDGKE-------VHFEYEGGIQA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ I  + F   TE++     +VE ++ W +     I  + N I   +GGTH
Sbjct: 112 FVEYLNRNKTPIHPKAFHFSTERED--GISVEVSMQWNDSYQENIFCFTNNIPQRDGGTH 169

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  Y +      K   S   DD       ++SV + +P+F+ QTK KLV
Sbjct: 170 LAGFRAALTRTLNGYMDKEGFSKKAKTSASGDDAREGLTAVISVKVPDPKFSSQTKDKLV 229

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           S + +  VE  + +    +L++NP +A  ++  +I+ +  R 
Sbjct: 230 SSEVKTAVEQTMAERLQEFLLENPNDAKIVVNKIIDAARARE 271


>gi|92918984|gb|ABE96840.1| DNA gyrase subunit B [Aeromonas molluscorum]
 gi|92919021|gb|ABE96857.1| DNA gyrase subunit B [Aeromonas molluscorum]
 gi|92919023|gb|ABE96858.1| DNA gyrase subunit B [Aeromonas molluscorum]
 gi|92919025|gb|ABE96859.1| DNA gyrase subunit B [Aeromonas molluscorum]
          Length = 321

 Score =  153 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 113/333 (33%), Positives = 177/333 (53%), Gaps = 17/333 (5%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++     N  GT + F P   IF D   +    L K  +  
Sbjct: 1   RNGHVYEQTYHMGEPQAPLKQIGD-SNGTGTEVRFWPSATIFTDTL-YHYDILAKRLREL 58

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 59  SFLNSGVSIRLEDERDGRE-------VHFCYEGGIKAFVEYLNQNKTPIHQKVFHFSTEQ 111

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE---LTQ 350
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +    ++
Sbjct: 112 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDREDYSK 168

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
             +  +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++
Sbjct: 169 KAKMSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLE 228

Query: 411 NPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLADC +     +EL+IV
Sbjct: 229 NPGDAKIVVNKIIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYIV 288

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           EGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 289 EGDSAGGSAKQGRNRKNQAILPLKGKILNVERA 321


>gi|148762433|dbj|BAF63918.1| DNA gyrase subunit B [Virgibacillus permianicus]
          Length = 328

 Score =  153 bits (386), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 111/340 (32%), Positives = 170/340 (50%), Gaps = 20/340 (5%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG SVVNALS+ L VT+ R+   + Q+F  G       +K+    K+G+ I
Sbjct: 1   YKVCGGLHGVGASVVNALSEWLEVTIHREGHTYFQRFENGGKPVGSLEKKGTTKKKGSTI 60

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PDP IF     +D   L +  +  A+L   +K   S  +         + EE+ FP 
Sbjct: 61  HFKPDPGIFTTIV-YDFETLSERLREAAFLLKGLKIQLSDLR-------NNQHEEYQFPD 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           GLK ++    E +  +       + E++G     V++A  + +     + S+ N + T +
Sbjct: 113 GLKAFVHYLNEEKDTLHPV-VAFEGEQQGI---EVDFAFQFNDGYAESMLSFVNHVRTKD 168

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQ 382
           GGTHESG R A+TR    YA       ++  ++   D+      I+SV + E   +F GQ
Sbjct: 169 GGTHESGARTAITRTFNDYARRAGLLKEKDKNLEGTDIREGFTSIVSVRVPEEKLQFEGQ 228

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK KL + +A+  V+  + +   ++L +NP  +  L++  I+  E R   RK RE  R  
Sbjct: 229 TKGKLGTPEARSAVDAIVSEKLSYFLEENPDVSGLLIKKAIKAKEAREAARKAREEARTG 288

Query: 443 AIRK---LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
             RK     L GKL           EL++VEGDSAGGSAK
Sbjct: 289 KKRKRKDTILSGKLTPAQSKNPKRNELYLVEGDSAGGSAK 328


>gi|323689896|dbj|BAJ78242.1| DNA gyrase subunit B [Shewanella benthica]
          Length = 305

 Score =  153 bits (386), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 84/283 (29%), Positives = 147/283 (51%), Gaps = 13/283 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L +T+ R   ++ Q ++ G P +P+++     +  G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSQKLQLTIRRNGKLYEQFYTMGEPDAPIKEIGDATS-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F    L+K  +  ++L+  V      +++  +       E F 
Sbjct: 60  TELRFWPSHETFTNNIEFHFDILVKRVRELSFLNSGVGIRLIDERDNRD-------EFFQ 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+  ++     N++ I+ ++F    E+      TVE A+ W +     I  + N I 
Sbjct: 113 YQGGISAFVDYLNVNKTPINKDVFHFIHERDD--GITVEVAMQWNDGFQENIFCFTNNIP 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  Y E      K   S   DD       ++SV + +P+F+ 
Sbjct: 171 QRDGGTHLAGFRGALTRNLNAYMEREGFNKKGKTSATGDDAREGLTAVVSVKVPDPKFSS 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           QTK KLVS + +  VE  + +    YL+++P EA  ++  +I+
Sbjct: 231 QTKDKLVSSEVKSAVEQTMGEKLGDYLMEHPTEARLIVGKIID 273


>gi|284929871|gb|ADC30021.1| DNA gyrase subunit B [Planktothrix agardhii NIVA-CYA 68]
 gi|284929873|gb|ADC30022.1| DNA gyrase subunit B [Planktothrix sp. PCC 7811]
 gi|284929887|gb|ADC30029.1| DNA gyrase subunit B [Planktothrix agardhii PCC 9239]
 gi|284929889|gb|ADC30030.1| DNA gyrase subunit B [Planktothrix agardhii PCC 9625]
 gi|284929895|gb|ADC30033.1| DNA gyrase subunit B [Planktothrix agardhii PCC 9702]
 gi|284929897|gb|ADC30034.1| DNA gyrase subunit B [Planktothrix agardhii PCC 9801]
 gi|284929903|gb|ADC30037.1| DNA gyrase subunit B [Planktothrix agardhii PCC 10606]
 gi|284929905|gb|ADC30038.1| DNA gyrase subunit B [Planktothrix agardhii PCC 10607]
          Length = 294

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 92/295 (31%), Positives = 145/295 (49%), Gaps = 3/295 (1%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E +LT LHAGGKF    Y++SGGLHGVG+SVVNALS+ L VTV R    +SQ+F RG P 
Sbjct: 1   ETVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSEWLEVTVFRDRKEYSQRFERGTPA 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           + L  K     + GT ++F PD  IF     FD   +    +  AYL+  VK   +  + 
Sbjct: 61  TELTSKPIKEARTGTSVSFLPDTSIFTTGIEFDCDTIASRLRELAYLNAGVKITLTDSRL 120

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                  P  E + + GG++ Y+     ++  +  +I     E+    +  V        
Sbjct: 121 ELLNRENPRIETYCYEGGIREYIAYMNNDKQPLHEDIIYTCGERSNV-QIEVALQWCTDA 179

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVG 368
            +  +  + N I T +GGTH  GL+  LTR +   A      +    ++  +++      
Sbjct: 180 YSDTVLGFANNIRTIDGGTHLEGLKTVLTRTLNAIARKRNKLKEGEANLGGENIREGLTA 239

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
           ++S  + +PEF GQTKT+L + + +  V++ + +    YL  NP  A  ++E  I
Sbjct: 240 VISAKVPDPEFEGQTKTRLGNPEVRGIVDSLVGEALTEYLEFNPGIADAIIEKAI 294


>gi|164456637|dbj|BAF97811.1| gyrase B subunit [Vibrio agarivorans]
          Length = 275

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 83/285 (29%), Positives = 146/285 (51%), Gaps = 13/285 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +  G P +PL       +K GT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSKQVTLTIHRGGQIHTQTYHHGEPQAPLGVIGDT-DKTGTE 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F P  + F +   F    L K  +  ++L+  V      ++E        + + F + 
Sbjct: 60  IRFWPSEETFSN-TEFHYDILAKRLRELSFLNSGVSIKLRDERE------EDKGDHFMYE 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG++ +++    N++ I  ++F   +E++      VE A+ W +     I  + N I   
Sbjct: 113 GGIQAFVEHLNTNKTPIIEKVFHFNSERED--GIAVEVAMQWNDGYQENIYCFTNNIPQR 170

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QT
Sbjct: 171 DGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQT 230

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           K KLVS + +  VE+A+ +    +L+++P EA  +   +I+ +  
Sbjct: 231 KDKLVSSEVKSAVESAMGEKLSEFLIEHPAEAKTVCTKIIDAARA 275


>gi|164456641|dbj|BAF97813.1| gyrase B subunit [Listonella anguillarum]
          Length = 273

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 85/283 (30%), Positives = 147/283 (51%), Gaps = 13/283 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G+P +PL    +  +K GT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKVLLTIYRNGAIHTQTYCHGVPQAPLAVVGET-DKTGTT 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F P  + F +   F    L K  +  ++L+  V      ++E  +K      + F + 
Sbjct: 60  LRFWPSAETFTN-IEFHYDILAKRLRELSFLNSGVSIKLLDEREEDKK------DHFRYE 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG+K ++     N++ I  ++F   +E+      TVE A+ W +     I  + N I   
Sbjct: 113 GGIKAFVGHLNRNKTPIHEKVFHFSSERDD--GITVEVAMQWNDGFQENIYCFTNNIPQR 170

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GG H +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QT
Sbjct: 171 DGGAHLAGFRGALTRTLNTFMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQT 230

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
           K KLVS + +  VE+A+ +    +L +NP EA  +   +I+ +
Sbjct: 231 KDKLVSSEVKTAVESAMGEKLAEFLAENPSEAKMVCSKIIDAA 273


>gi|58415306|emb|CAH04911.1| DNA gyrase subunit B [Frigoribacterium faeni]
 gi|117675839|emb|CAL69190.1| DNA gyrase subunit B [Frigoribacterium faeni]
          Length = 300

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 97/301 (32%), Positives = 157/301 (52%), Gaps = 6/301 (1%)

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L    Q  A+L+  ++   S ++ + E       + F++  GL  Y++     + + 
Sbjct: 1   YETLRTRFQQMAFLNKGLRIELSDER-VQEDDATARHDVFHYEKGLVDYVEYLNTVKKVE 59

Query: 284 SSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +        E +    + ++E A+ W       + +Y NTI T EGGTHE G R ALT  
Sbjct: 60  TVHDDIIAFEQEDTEKKISLEVAMQWNTSYQESVHTYANTINTHEGGTHEEGFRAALTTL 119

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + +YA   +   ++  ++  DD+      ++S+ + EP+F GQTKTKL + +A+  V+  
Sbjct: 120 VNRYAREQKLLKEKDDNLTGDDVREGLTAVISIKLGEPQFEGQTKTKLGNTEAKSFVQKI 179

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458
             D    +  +NP +AT+++   I  S+ R+  RK RE  R+   +    +PGKL DC  
Sbjct: 180 TFDQITDWFGRNPRQATEIVRKGILASQARMAARKAREQTRRKGVLESNGMPGKLKDCQS 239

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
                +E+FIVEGDSAGGSA Q RN   QA+LPLRGKILNV  A  ++   N ++  +++
Sbjct: 240 KDPSLSEIFIVEGDSAGGSAVQGRNPETQAILPLRGKILNVEKARLDRALGNNEVQAMIK 299

Query: 519 A 519
           A
Sbjct: 300 A 300


>gi|85681949|gb|ABC73080.1| DNA gyrase subunit beta [Oceanimonas denitrificans]
          Length = 271

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 84/282 (29%), Positives = 140/282 (49%), Gaps = 14/282 (4%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS++L +T+ R   +  Q +  G P +PL +  +     GT I F P
Sbjct: 1   GGLHGVGVSVVNALSEKLQLTIWRNGKVHEQTYVHGEPQAPLAEVGETTK-SGTLIRFWP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
               F D   F    L K  +  ++L+  V      +++  E         F + GG++ 
Sbjct: 60  SHATFTD-TDFHYDILAKRLRELSFLNSGVSIRLLDERDNKE-------AHFQYEGGIQA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ I  + F   TE++      VE ++ W +     I  + N I   +GGTH
Sbjct: 112 FVEYLNRNKTPIHPKAFHFATERED--GIAVEVSMQWNDSYQENIFCFTNNIPQRDGGTH 169

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  Y +      K   S   DD       ++SV + +P+F+ QTK KLV
Sbjct: 170 LAGFRAALTRTLNSYMDKEGYSKKAKTSASGDDAREGLTAVISVKVPDPKFSSQTKDKLV 229

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           S + +  VE A+ +  + +L++NP +A  ++  +I+ +  R 
Sbjct: 230 SSEVKTAVEQAMAERLNEFLLENPSDAKIVVNKIIDAARARE 271


>gi|284929877|gb|ADC30024.1| DNA gyrase subunit B [Oscillatoria sp. PCC 8926]
          Length = 294

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 92/295 (31%), Positives = 145/295 (49%), Gaps = 3/295 (1%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E +LT LHAGGKF    Y++SGGLHGVG+SVVNALS+ L VTV R    +SQ+F RG P 
Sbjct: 1   ETVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSEWLEVTVFRDKKEYSQRFERGTPA 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           + L  K     + GT ++F PD  IF     FD   +    +  AYL+  VK   +  + 
Sbjct: 61  TELTSKPIKEARTGTSVSFLPDTSIFTTGIEFDCDTIASRLRELAYLNAGVKITLTDSRL 120

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                  P  E + + GG++ Y+     ++  +  +I     E+    +  V        
Sbjct: 121 ELLNRENPRIETYCYQGGIREYIAYMNNDKQPLHEDIIYTCGERSNV-QIEVALQWCTDA 179

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVG 368
            +  +  + N I T +GGTH  GL+  LTR +   A      +    ++  +++      
Sbjct: 180 YSDTVLGFANNIRTIDGGTHLEGLKTVLTRTLNAIARKRNKLKEGEANLGGENIREGLTA 239

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
           ++S  + +PEF GQTKT+L + + +  V++ + +    YL  NP  A  ++E  I
Sbjct: 240 VISAKVPDPEFEGQTKTRLGNPEVRGIVDSLVGEALTEYLEFNPGVADAVIEKAI 294


>gi|164456649|dbj|BAF97817.1| gyrase B subunit [Vibrio cholerae]
          Length = 271

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 85/279 (30%), Positives = 147/279 (52%), Gaps = 13/279 (4%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I SQ +  G+P +PL    +   + 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGET-ERT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT + F P  + F +   F    L K  +  ++L+  V    + ++E  +K      + F
Sbjct: 60  GTTVRFWPSAQTFTN-IEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GG++ ++     N++ I  ++F    E++     +VE A+ W +     I  + N I
Sbjct: 113 MYEGGIQAFVTHLNRNKTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  Y +      K   +   DD       ++SV + +P+F+
Sbjct: 171 PQRDGGTHLAGFRGALTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
            QTK KLVS + +  VE+A+ +    +L +NP EA  + 
Sbjct: 231 SQTKDKLVSSEVKSAVESAMNEKLADFLAENPSEAKNVC 269


>gi|54125545|gb|AAV30539.1| gyrase B [Serratia sp. MF 426]
          Length = 298

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 92/308 (29%), Positives = 153/308 (49%), Gaps = 15/308 (4%)

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS++L + + R+  +  Q +  G P  PL+   +   + GT + F P  
Sbjct: 1   LHGVGVSVVNALSEKLELVIRREGKVHEQTYKHGEPQGPLKVVGET-EQTGTTVRFWPSY 59

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           + F +   F+   L K  +  ++L+  V       +   E       + F++ GG+K ++
Sbjct: 60  QTFTNNTEFEYDILAKRLRELSFLNSGVSIRLKDKRNDKE-------DHFHYEGGIKAFV 112

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   +N++ I   +F   T K       VE A+ W +     I  + N I   +GGTH +
Sbjct: 113 EYLNKNKTPIHPTVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLA 169

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R A+TR +  Y +      K  IS   DD     + ++SV + +P+F+ QTK KLVS 
Sbjct: 170 GFRAAMTRTLNNYMDKEGYSKKSKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSS 229

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRL 449
           + +  VE+ + +    YL++NP +A  ++  +I+        R+ +    RK A+    L
Sbjct: 230 EVKTAVESLMNEKLVDYLMENPADAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGL 289

Query: 450 PGKLADCS 457
           PGKLADC 
Sbjct: 290 PGKLADCQ 297


>gi|164456697|dbj|BAF97841.1| gyrase B subunit [Vibrio mytili]
          Length = 273

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 86/283 (30%), Positives = 142/283 (50%), Gaps = 13/283 (4%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K GT I F P
Sbjct: 1   GGLHGVGVSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTTIRFWP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++E        +++ F + GG+K 
Sbjct: 60  SSETFTN-TEFHYDILAKRLRELSFLNSGVSIKLIDERE------EDKQDHFMYEGGIKA 112

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++     N++ I  +IF    E++      VE A+ W +     I  + N I   +GGTH
Sbjct: 113 FVDHLNTNKTPIIEKIFHFNFERED--GIAVEVAMQWNDGFQENIFCFTNNIPQRDGGTH 170

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QTK KLV
Sbjct: 171 LAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLV 230

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           S + +  VE+A+ +    +LV+NP EA  +   +I+ +  R  
Sbjct: 231 SSEVKSAVESAMGEKLSEFLVENPTEAKMVCSKIIDAARAREA 273


>gi|321117358|dbj|BAJ72156.1| gyrase B [Erwinia sp. 'uzenensis']
          Length = 333

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 105/343 (30%), Positives = 171/343 (49%), Gaps = 15/343 (4%)

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
            R+     Q    G+P + L    +  +  GTR+ F P    F +   F+   L K    
Sbjct: 1   RREGNXHXQXXIHGVPQAALNVPGET-DLTGTRVRFWPXHXTFTNVVEFEYKILAKRLXE 59

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            ++L+  V       ++        + + +++ GG+K +++   +N++ I    F   TE
Sbjct: 60  LSFLNSGVSIELEDKRD-------GKNDHYHYXGGIKAFVEYLNKNKTPIHPNAFYFSTE 112

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350
           K       VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +     
Sbjct: 113 KDCI---GVEVALQWNDGFQENIXCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYS 169

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++
Sbjct: 170 KKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLE 229

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNR-KTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           +P +A  ++  +I+ +  R    + RE+ R K A+    LPGKLADC +      E++ V
Sbjct: 230 HPGDAKIVVGKIIDAARAREAAPRAREMTRCKGALDLAGLPGKLADCQERDPALFEIYXV 289

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           EGD AGG AKQ RNR NQA+ PL+GKILNV     +K+  +Q+
Sbjct: 290 EGDFAGGFAKQGRNRKNQAIXPLKGKILNVEKXRFDKMLASQE 332


>gi|171673947|gb|ACB47822.1| topoisomerase IV subunit B [Spiroplasma penaei]
          Length = 367

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 117/369 (31%), Positives = 189/369 (51%), Gaps = 12/369 (3%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           + V +ALS  L + V + N  +  +F  G  +    K+    N+ GT +TF PD KIF +
Sbjct: 5   LKVDHALSKYLKIEVKKNNKQYLMEFHNGGQILTPIKEVGTTNETGTTVTFLPDEKIFKE 64

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F  + +    +  A+L+  ++      +E  E+    +   + F  G+K Y+    +
Sbjct: 65  TTIFSFSTIQNRIKQLAFLNKGLEISLVDLREEDEE----KSVVYQFNNGIKDYVLELNK 120

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
                 +++F  +  +       VE+ + + +     I S+CN I T EGGTHE G ++A
Sbjct: 121 TIGTPLNDVFYVEGIEDNII---VEFGLQYNDNYSENIFSFCNNINTHEGGTHEEGTKLA 177

Query: 338 LTRGIKKYAELTQNKR---AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           + R +  Y +               DD+      I+S+   +P++ GQTKTKL + + ++
Sbjct: 178 IVRELNNYFKNINKNNKGNEDKFTWDDVKEGMTTIISIRHPDPQYEGQTKTKLGNSEVKK 237

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKL 453
            V N +    + YL++NP +A  ++E +    + R+  ++ +E   RKT +    LPGKL
Sbjct: 238 IVSNIVGKGLNSYLLENPEDAKNIIEKINLSLKARIAAQRAKETTRRKTVMDSFSLPGKL 297

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           ADC    ++  EL+IVEGDSAGGSAK  RNR  QA+LPLRGKILNV  A   K+  N +I
Sbjct: 298 ADCETKDSNIAELYIVEGDSAGGSAKAGRNRRFQAILPLRGKILNVEKAKQLKVFENNEI 357

Query: 514 MDLVQALGC 522
             ++ ALG 
Sbjct: 358 NSIITALGA 366


>gi|159576546|dbj|BAF92822.1| DNA gyrase subunit B [Virgibacillus sp. 2-10-1]
          Length = 328

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 110/340 (32%), Positives = 170/340 (50%), Gaps = 20/340 (5%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG SVVNALS+ L VT+ R+   + Q+F  G       +K+    K+G+ I
Sbjct: 1   YKVFGGLHGVGASVVNALSEWLEVTIHREGHTYFQRFENGGKPVGSLEKKGTTKKKGSTI 60

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PDP IF     +D   L +  +  A+L   +K   S  +         + EE+ FP 
Sbjct: 61  HFKPDPGIFTTIV-YDFETLSERLREAAFLLKGLKIQLSDLR-------NNQHEEYQFPD 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           GLK ++    E +  +       + E++G     V++A  + +     + S+ N + T +
Sbjct: 113 GLKAFVHYLNEEKDTLHPV-VAFEGEQQGI---EVDFAFQFNDGYAESMLSFVNHVRTKD 168

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQ 382
           GGTHESG R A+TR    YA       ++  ++   D+      I+SV + E   +F GQ
Sbjct: 169 GGTHESGARTAITRTFNDYARRAGLLKEKDKNLEGTDIREGFTSIVSVRVPEEKLQFEGQ 228

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK +L + +A+  V+  + +   ++L +NP  +  L++  I+  E R   RK RE  R  
Sbjct: 229 TKGRLGTPEARSAVDAIVSEKLSYFLEENPDVSGLLIKKAIKAKEAREAARKAREEARTG 288

Query: 443 AIRK---LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
             RK     L GKL           EL++VEGDSAGGSAK
Sbjct: 289 KKRKRKDTILSGKLTPAQSKNPKRNELYLVEGDSAGGSAK 328


>gi|58465061|gb|AAW78426.1| DNA topoisomerase II beta subunit [Shewanella sediminis]
          Length = 336

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 118/346 (34%), Positives = 176/346 (50%), Gaps = 15/346 (4%)

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           V ALS +L +T+ R   ++ Q ++ G P  P++      N  GT I F P    F D   
Sbjct: 1   VYALSHKLQLTIRRDGKLYEQFYTHGEPDEPIKAIGDATN-TGTEIRFWPSTDTFTDVL- 58

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F    L K  +  ++L+  V      +++  +       E F + GG+  ++     N++
Sbjct: 59  FHFDILAKRVRELSFLNSGVGVRLVDERDNRD-------EFFKYDGGISAFVDYLNVNKT 111

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            ++ E+F    E+      TVE A+ W +     I  + N I   +GGTH +G R ALTR
Sbjct: 112 PVNKEVFHFIQERDD--GITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRGALTR 169

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +  Y E      K       DD       ++SV + +P+F+ QTK KLVS + +  VE 
Sbjct: 170 NLNTYMEREGYNKKGKTGATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQ 229

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCS 457
            + +    YL+++P EA  ++  +I+ +  R   RK R    RK A+    LPGKLADC 
Sbjct: 230 TMGEQLGDYLMEHPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQ 289

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           +     +E++IVEGDSAGGSAKQ RNR NQA+LPL+GK LNV  A 
Sbjct: 290 EKDPALSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKXLNVEKAR 335


>gi|164385322|gb|AAX89534.2| DNA gyrase subunit B [Vibrio tapetis]
          Length = 316

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 86/287 (29%), Positives = 145/287 (50%), Gaps = 13/287 (4%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+++Y++SGGLHGVG+S VNALS ++ +T+ RQ +   Q +  G P +PL      
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSXVNALSKQVDLTIHRQGSTHQQTYRHGEPDAPLGVTGDT 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
               GT I F P  + F +   F    J K  +  ++L+  V      ++E        +
Sbjct: 61  EK-TGTIIRFWPSEETFTNVH-FHYEIJAKRLRELSFLNSGVSIKLIDERE------EDK 112

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
            + F + GG + ++     N++ I  ++F    E++     +VE A+ W +     I  +
Sbjct: 113 MDHFCYEGGTQAFVDYLNTNKTPIIQKVFHFDYERED--GISVEVAMQWNDGYQENIFCF 170

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +G R ALTR +  + +      K   +   DD       I+SV + +
Sbjct: 171 TNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAIVSVKVPD 230

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
           P+F+ QTK KLVS + +  VE+A+ +    +L++ P EA  +   +I
Sbjct: 231 PKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIEXPSEAKIVCSKII 277


>gi|45502044|emb|CAF06523.1| Gyrase [Microbulbifer cystodytense]
          Length = 301

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 91/283 (32%), Positives = 149/283 (52%), Gaps = 15/283 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           ++TY++SGGLHGVG+SVVNALS EL +T+ R   I  Q +  G+P +PLE      +  G
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSRELKLTIRRGGKIHEQTYHHGVPQAPLEIVGD-SDISG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F+P  + F +   F    L K  +  ++L+  V+     ++         ++E + 
Sbjct: 60  TTVHFKPSAETFNN-IEFHFDILAKRLRELSFLNSGVRIVLKDER-------TGKEEVYE 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL+ +++   +N++ ++  +      + GT    VE A+ W +     I  Y N I 
Sbjct: 112 YEGGLRAFVEFLNQNKTPVNKVLHFSSQREDGT---AVEVALQWNDSFQENIFCYTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLAGFRAALTRGLNSYIEREGLGKKDKVNTTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           QTK KLVS + +  VE  +   F  YL++NP EA  ++  +I+
Sbjct: 229 QTKDKLVSSEVKPAVEQEMGHHFTDYLMENPQEAKSVVTKMID 271


>gi|30793662|gb|AAM52893.1| DNA gyrase subunit beta [Aeromonas sobria]
          Length = 319

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 114/331 (34%), Positives = 175/331 (52%), Gaps = 16/331 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++  +     GT + F P P IF D   +    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGESSG-TGTEVRFWPSPTIFTDTL-YHYEILAKRLREL 58

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE 
Sbjct: 59  SFLNSGVSIRLRDERDGRE-------VHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEH 111

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 112 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSK 168

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 169 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLEN 228

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 229 PSDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 288

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  
Sbjct: 289 GDSAGGSAKQGRNRKNQAILPLKGKILNVEK 319


>gi|215271412|emb|CAR48195.1| gyrase B subunit [Vibrio rotiferianus]
 gi|215271414|emb|CAR48196.1| gyrase B subunit [Vibrio rotiferianus]
 gi|215271416|emb|CAR48197.1| gyrase B subunit [Vibrio rotiferianus]
 gi|215271418|emb|CAR48198.1| gyrase B subunit [Vibrio rotiferianus]
 gi|215271420|emb|CAR48199.1| gyrase B subunit [Vibrio rotiferianus]
          Length = 325

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 114/335 (34%), Positives = 174/335 (51%), Gaps = 14/335 (4%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            I +Q +  G P +PL        + GT+I F P  + F +   F    L K  +  ++L
Sbjct: 1   HIHTQTYHHGEPQAPLAVVGDT-EQTGTQIRFWPSAETFTNI-EFHYDILAKRLRELSFL 58

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V      ++E        + + F F GG++ +++    N++ I  +IF    E++  
Sbjct: 59  NSGVSIKLVDEREAD------KSDHFMFEGGIQAFVEHLNTNKTPIIEKIFHFDFERED- 111

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               VE A+ W +     I  + N I   +GGTH +G R ALTR +  + +      K  
Sbjct: 112 -GIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNTFMDKEGFSKKAK 170

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
            +   DD       ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +L++NP E
Sbjct: 171 TATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIENPTE 230

Query: 415 ATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  +   +I+ +  R   RK R    RK A+    LPGKLADC +     +EL+IVEGDS
Sbjct: 231 AKMVCTKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDS 290

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508
           AGGSAKQ RNR NQA+LPL+GKILNV  A  +K+ 
Sbjct: 291 AGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 325


>gi|190148846|gb|ACE63398.1| DNA gyrase B subunit [Pseudonocardia dioxanivorans CB1190]
          Length = 330

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 104/336 (30%), Positives = 170/336 (50%), Gaps = 20/336 (5%)

Query: 182 QKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241
           QK++R +P   ++         GT +TF  DP IF     ++   + +  Q  A+L+  +
Sbjct: 1   QKYTRSVPGPLVK--GAPTRATGTTVTFWADPDIFETTT-YNVETVRRRLQEMAFLNKGL 57

Query: 242 KTCWSCDKEIAEKYGIP----------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGK 291
                 ++                   ++  F++P GL+ ++    + +  I  ++ +  
Sbjct: 58  TIVLRDERNGDNGEAEEPDAEGYVAKIKEYTFHYPNGLEDFVAHLNKTKDPIHKKLVSFS 117

Query: 292 TEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350
            E  G     +E A+ W       + ++ NTI T EGGTHE G R ALT  + +YA   +
Sbjct: 118 GEAPGH---ALEVAMQWNSGYTESVYTFANTINTHEGGTHEEGFRAALTSTVNRYARDKK 174

Query: 351 --NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
              ++  ++  DD+      I+SV ++EP+F GQTKTKL + + +  V+    +    + 
Sbjct: 175 LLKEKDPALSGDDIREGLAAIVSVKVKEPQFEGQTKTKLGNTEVKSFVQRVSNEWLADWF 234

Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELF 467
            +NP EA  ++   ++ ++ R+  RK RE V RK+A     LPGKLADC       +E++
Sbjct: 235 ERNPTEARTIVNKAVQSAQARMAARKARELVRRKSAGDIGGLPGKLADCRSTDPSRSEVY 294

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
           IVEGDSAGGSAK  R+   QA+LP+RGKI+NV  A 
Sbjct: 295 IVEGDSAGGSAKSGRDSMFQAILPIRGKIINVEKAR 330


>gi|4514467|dbj|BAA75432.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 304

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 97/315 (30%), Positives = 158/315 (50%), Gaps = 15/315 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS++L +T+ R   I  Q++  G    PL+      N+ G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLELTIHRAGKIHEQEYRHGDSQYPLKVVGDT-NRTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           TR+ F P  + F     F+   L +  +  ++L+  V+     ++  AE         F 
Sbjct: 60  TRVRFWPSAETFSQTI-FNVDILARRLRELSFLNAGVRIVLRDERINAE-------HVFD 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   E ++ ++        +       TVE A+ W +     +  + N I 
Sbjct: 112 YEGGLSEFVKYINEGKTHLNDIFHFTAAQADN--GITVEVALQWNDSYQENVRCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y +      K  +++  DD       I+SV + +P+F+ 
Sbjct: 170 QKDGGTHLAGFRAALTRGLNNYMDSENILKKEKVAVSGDDAREGLTAIVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNR 440
           QTK KLVS + +  VE A+   F  YL++NP  A  +   +I         R+ +    R
Sbjct: 230 QTKEKLVSSEVKTAVEQAMNKAFSEYLLENPQAAKAIAGKIIDAARARDAARKAREMTRR 289

Query: 441 KTAIRKLRLPGKLAD 455
           K+A+    LPGKLAD
Sbjct: 290 KSALDIAGLPGKLAD 304


>gi|164456703|dbj|BAF97844.1| gyrase B subunit [Vibrio neptunius]
          Length = 274

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 83/284 (29%), Positives = 146/284 (51%), Gaps = 13/284 (4%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +  G P +PL    +  +K GT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGQIHTQTYHHGEPQAPLSVIGET-DKTGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            I F P  + F +   F    L K  +  ++L+  V      ++E        +++ F +
Sbjct: 60  EIRFWPSEETFSN-TEFHYDILAKRLRELSFLNSGVSIKLRDERE------EDKQDHFMY 112

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG++ ++     N++ I  ++F    E++      VE A+ W +     I  + N I  
Sbjct: 113 EGGIQAFVDHLNTNKTPIIEKVFHFNAERED--GIAVEVAMQWNDGYQENIFCFTNNIPQ 170

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ Q
Sbjct: 171 RDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
           TK KLVS + +  VE A+ +    +L+++P EA  +   +I+ +
Sbjct: 231 TKDKLVSSEVKSAVEQAMGEKLSEFLIEHPAEAKTVCTKIIDAA 274


>gi|164456645|dbj|BAF97815.1| gyrase B subunit [Vibrio campbellii]
          Length = 274

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 85/284 (29%), Positives = 147/284 (51%), Gaps = 13/284 (4%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL          GT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDTEK-TGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           +I F P  + F +   F    L K  +  ++L+  V      ++E        + + F F
Sbjct: 60  QIRFWPSAETFSN-TEFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KSDHFMF 112

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG++ +++    N++ I  +IF    E++     +VE A+ W +     I  + N I  
Sbjct: 113 EGGIQAFVEHLNTNKTPIIEKIFHFDFERED--GISVEVAMQWNDGFQENIYCFTNNIPQ 170

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ Q
Sbjct: 171 RDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
           TK KLVS + +  VE+A+ +    +L++NP EA  +   +I+ +
Sbjct: 231 TKDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAA 274


>gi|116069854|gb|ABI13056.2| DNA gyrase subunit B [Pseudomonas sp. CF600]
          Length = 304

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 97/315 (30%), Positives = 160/315 (50%), Gaps = 15/315 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS++L +TV R   I+ Q +  G+P +P+          G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGD-SETTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I F+P  + F +   F    L K  +  ++L+  V      ++   E       E F 
Sbjct: 60  THIHFKPSAETFKNIH-FSWDILAKRIRELSFLNSGVGILLKDERSGKE-------EFFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL+ +++    N++ ++S++F    ++       VE A+ W +     +  + N I 
Sbjct: 112 YEGGLRAFVEYLNTNKTPVNSQVFHFNVQRDD--GVGVEVALQWNDSFNENLLCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH  G R +LTR +  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 170 QRDGGTHLVGFRSSLTRSLNNYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNR 440
           QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    R
Sbjct: 230 QTKDKLVSSEVKTAVEQEMNKFFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRR 289

Query: 441 KTAIRKLRLPGKLAD 455
           K A+    LPGKLAD
Sbjct: 290 KGALDIAGLPGKLAD 304


>gi|190569879|dbj|BAG48897.1| DNA gyrase subunit B [Bartonella grahamii]
          Length = 325

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 115/334 (34%), Positives = 172/334 (51%), Gaps = 13/334 (3%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            I    F+ G+  +PL+       + GT I F P  + F     FD   L +  +  A+L
Sbjct: 1   KIHEISFTHGVADAPLKVIGDCDKESGTEIRFLPSSETFT-MVEFDFETLERRLRELAFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V      ++    K         ++ GGL  +++   +++  +        +EK G 
Sbjct: 60  NSGVYILLVDERHADTKSVE-----LHYEGGLTEFVKYIDQSKKALLDNPIYIASEKDG- 113

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
              +V+ A+ W +    ++  + N I   +GGTH  G R ALTR I  YAE +    K  
Sbjct: 114 --MSVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLIGFRSALTRQINGYAESSGIAKKEK 171

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +++  DD       ILSV + +P+F+ QTK KLVS + +  VEN + +    +L ++P E
Sbjct: 172 VNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVENLVNEGLSVWLEEHPHE 231

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  L+  V+E +  R   RK RE   RK A+    LPGKLADC +     +E+FIVEGDS
Sbjct: 232 AKLLISKVVEAATAREAARKARELTRRKGALDITSLPGKLADCQERDPAKSEIFIVEGDS 291

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
           AGGSAK  R+R NQA+LPLRGKILNV  A  +++
Sbjct: 292 AGGSAKSGRSRQNQAILPLRGKILNVERARFDRM 325


>gi|110225000|dbj|BAE97489.1| DNA gyrase subunit B [Streptococcus peroris]
          Length = 300

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 93/282 (32%), Positives = 145/282 (51%), Gaps = 12/282 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS +L V V +   I  Q++ RG  ++ L+      +K G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVRVHKNGKIHYQEYRRGHVVADLKVIGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PDP+IF +   FD  +L K  Q  A+L+  ++   +  +E  E     + + ++
Sbjct: 60  TIVHFTPDPEIFTETTTFDFDKLNKRIQELAFLNRGLQISITDKREGLE-----QTKHYH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+ +Y++   EN+ +I         E       TVE A+ +     E   S+ N I 
Sbjct: 115 YEGGIASYVKYINENKDVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G R ALTR I  YA   +  +    ++  +D+      ++SV    P+F G
Sbjct: 172 THEGGTHEQGFRTALTRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
           QTKTKL + +  +       D F  +L++NP  A +++E  I
Sbjct: 232 QTKTKLGNSEVVKITNRLFSDAFSDFLLENPQIAKRIVEKGI 273


>gi|284929857|gb|ADC30014.1| DNA gyrase subunit B [Planktothrix rubescens CCAP 1459/30]
 gi|284929859|gb|ADC30015.1| DNA gyrase subunit B [Planktothrix rubescens CCAP 1459/40]
 gi|284929861|gb|ADC30016.1| DNA gyrase subunit B [Planktothrix rubescens CCAP 1460/10]
 gi|284929863|gb|ADC30017.1| DNA gyrase subunit B [Planktothrix rubescens CCAP 1460/18]
 gi|284929865|gb|ADC30018.1| DNA gyrase subunit B [Planktothrix agardhii CCAP 1459/11A]
 gi|284929867|gb|ADC30019.1| DNA gyrase subunit B [Planktothrix rubescens CCAP 1459/14]
 gi|284929869|gb|ADC30020.1| DNA gyrase subunit B [Planktothrix rubescens NIES-1266]
 gi|284929875|gb|ADC30023.1| DNA gyrase subunit B [Planktothrix rubescens NIVA-CYA 18]
 gi|284929893|gb|ADC30032.1| DNA gyrase subunit B [Planktothrix agardhii PCC 9637]
 gi|284929899|gb|ADC30035.1| DNA gyrase subunit B [Planktothrix rubescens PCC 10106]
 gi|284929901|gb|ADC30036.1| DNA gyrase subunit B [Planktothrix agardhii PCC 10110]
          Length = 294

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 92/295 (31%), Positives = 145/295 (49%), Gaps = 3/295 (1%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E +LT LHAGGKF    Y++SGGLHGVG+SVVNALS+ L VTV R    +SQ+F RG P 
Sbjct: 1   ETVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSEWLEVTVFRDRKEYSQRFERGTPA 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           + L  K     + GT + F PD  IF     FD   +    +  AYL+  VK   +  + 
Sbjct: 61  TELTSKPIKEARTGTSVCFLPDTVIFTTGIEFDCDTIASRLRELAYLNAGVKITLTDSRL 120

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
              +   P  E + + GG++ Y+     ++  +  +I     E+    +  V        
Sbjct: 121 ELLRRETPRIETYRYEGGIREYIAYMNNDKQPLHEDIIYTCGERSNV-QIEVALQWCTDA 179

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVG 368
            +  +  + N I T +GGTH  GL+  LTR +   A      +    ++  +++      
Sbjct: 180 YSDTVLGFANNIRTIDGGTHLEGLKTVLTRTLNAIARKRNKLKEGEANLGGENIREGLTA 239

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
           ++S  + +PEF GQTKT+L + + +  V++ + +    YL  NP  A  ++E  I
Sbjct: 240 VISAKVPDPEFEGQTKTRLGNPEVRGIVDSLVGEALTEYLEFNPGIADAIIEKAI 294


>gi|110224996|dbj|BAE97487.1| DNA gyrase subunit B [Streptococcus parasanguinis]
          Length = 300

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 90/282 (31%), Positives = 149/282 (52%), Gaps = 12/282 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS  L V V +  +I+ Q++ RG  +  L+   +  ++ G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTSLDVRVYKNGSIYYQEYRRGHVVDDLKVIGET-DRTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PDP+IF +   +D  +L K  Q  A+L+  ++   +  +E  E     +++ ++
Sbjct: 60  TTVHFIPDPEIFTETTEYDFEKLNKRIQELAFLNRGLRISLTDKREGLE-----QEKHYH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+ +Y++   EN+ +I  +      E       TVE A+ +       + S+ N I 
Sbjct: 115 YEGGISSYVEYINENKDVIFEKPIYTDGEMDDI---TVEVAMQYTTGYHETVMSFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G R ALTR +  YA+  +  +    ++  +D+      ++SV    P+F G
Sbjct: 172 THEGGTHEQGFRTALTRVVNDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
           QTKTKL + +  +       D F  +L++NP  A K++E  I
Sbjct: 232 QTKTKLGNSEVVKITNRLFSDAFSDFLLENPQIAKKIVEKGI 273


>gi|30793682|gb|AAM52903.1| DNA gyrase subunit beta [Aeromonas veronii bv. sobria]
          Length = 320

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 115/332 (34%), Positives = 176/332 (53%), Gaps = 16/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPAIFSDTL-FHYEILAKRLREL 58

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 59  SFLNSGVSIRLQVERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 111

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 112 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSK 168

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 169 KAKSAASGDDVREGVIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLEN 228

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 229 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 288

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR +QA+LPL+GKILNV  A
Sbjct: 289 GDSAGGSAKQGRNRKDQAILPLKGKILNVEKA 320


>gi|190148864|gb|ACE63407.1| DNA gyrase B subunit [Pseudonocardia thermophila]
          Length = 329

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 104/323 (32%), Positives = 167/323 (51%), Gaps = 18/323 (5%)

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
           K+ +   + GT ITF  DP+IF     ++   + +  Q  A+L+  +      ++   + 
Sbjct: 11  KRGEPTTRTGTSITFWADPEIFETTT-YNVETVRRRLQEMAFLNKGLTMILRDERNGDDG 69

Query: 255 YGIP----------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
                         ++ +F++P GL+ ++    +++  I  ++     E+ G    ++E 
Sbjct: 70  EAEEPDAEGYVAKVKEYKFHYPNGLEDFVAHLNKSKEPIHKKLIAYSAEEPGH---SLEV 126

Query: 305 AIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDD 361
           A+ W       + ++ NTI T EGGTHE G R ALT  + +YA   +    +  ++  DD
Sbjct: 127 AMQWNSGYTESVYTFANTINTHEGGTHEEGFRAALTSTVNRYAREKKLLKDKDPALSGDD 186

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
           +      I+SV ++EP+F GQTKTKL + + +  V+    +    +L +NP EA  ++  
Sbjct: 187 IREGLAAIVSVKLKEPQFEGQTKTKLGNTEVKSFVQRVSNEWLADWLERNPTEAKIIVNK 246

Query: 422 VIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
            I+ ++ R+  RK RE V RK       LPGKLADC        EL+IVEGDSAGGSAK 
Sbjct: 247 AIQSAQARIAARKARELVRRKAPGDIGGLPGKLADCRSTDPSKCELYIVEGDSAGGSAKS 306

Query: 481 ARNRSNQAVLPLRGKILNVASAG 503
            R+   QA+LP+RGKI+NV  A 
Sbjct: 307 GRDSMFQAILPIRGKIINVEKAR 329


>gi|58415304|emb|CAH04910.1| DNA gyrase subunit B [Curtobacterium flaccumfaciens pv.
           poinsettiae]
 gi|117675841|emb|CAL69191.1| DNA gyrase subunit B [Curtobacterium flaccumfaciens pv.
           poinsettiae]
          Length = 299

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 97/299 (32%), Positives = 151/299 (50%), Gaps = 6/299 (2%)

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            Q  A+L+  ++     ++   E+      + F +  GL  Y++     +          
Sbjct: 1   FQQMAFLNKGLRINLRDER-APEEGEEARNDTFMYERGLADYVEFINAQKKADLVHPDVI 59

Query: 291 KTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
             E +    +  +E A+ W       + ++ NTI T EGGTHE G R ALT  + +YA  
Sbjct: 60  GFESEDPDRKIALEVAMQWNTSYQESVHTFANTINTHEGGTHEEGFRAALTTLVNRYARE 119

Query: 349 TQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
            +   ++  ++  DD+      ++SV + EP+F GQTKTKL + +A+  V+  +     H
Sbjct: 120 AKIIKEKDDNLTGDDIREGLTAVISVKLGEPQFEGQTKTKLGNTEAKSFVQRVVGTELTH 179

Query: 407 YLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTE 465
           +   NP +A  ++   I+ S+ RL  RK RE  R+  +     +PGKL DC       +E
Sbjct: 180 WFESNPTQARDVVRKAIQASQARLAARKARETTRRKGLLESGGMPGKLKDCQSKDPTLSE 239

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           +F+VEGDSAGGSA Q RN   QA+LPLRGKILNV  A  ++   NQ+I  ++ A G   
Sbjct: 240 IFMVEGDSAGGSAVQGRNPMTQAILPLRGKILNVEKARLDRALANQEIQSMITAFGAGI 298


>gi|4514459|dbj|BAA75428.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 303

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 96/315 (30%), Positives = 156/315 (49%), Gaps = 16/315 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L +T+ R   I  Q++  G P+ PL       +  G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSRKLELTIHRAGHIHQQEYKHGDPVYPLTVVGNT-DTTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F     F+   L +  +  ++L+  V+     ++  AE         F 
Sbjct: 60  TTVRFWPSAETFSQTI-FNVDILARRLRELSFLNAGVRIVLRDERIHAE-------HVFD 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   + ++ ++         + G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLSEFVKYINQGKTHLNDIFHFTVQAENGI---GVEVALQWNDTYQENVRCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  +++  DD       I+SV + +P+F+ 
Sbjct: 169 QKDGGTHLAGFRAALTRGLNSYMENENLLKKEKVAVSGDDAREGLTAIVSVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNR 440
           QTK KLVS + +  VE A+   F  YL++NP  A  +   +I         R+ +    R
Sbjct: 229 QTKEKLVSSEVKPAVEQAMNKSFSEYLLENPQAAKSIAGKIIDAARARDAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLAD 455
           K+A+    LPGKLAD
Sbjct: 289 KSALDIAGLPGKLAD 303


>gi|60116925|gb|AAX14394.1| DNA gyrase B subunit [Serratia plymuthica]
          Length = 303

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 91/311 (29%), Positives = 154/311 (49%), Gaps = 15/311 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS++L + + R+  +  Q ++ G P +PL+   +  ++ GT + F P  +
Sbjct: 1   HGVGVSVVNALSEKLELVIRREGKVHEQTYAMGEPQAPLKVVGET-DQTGTTVRFWPSYE 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
            F +   F+   L K  +  ++L+  V       +   E       + F++ GG+K +++
Sbjct: 60  TFTNNVEFEYDILAKRLRELSFLNSGVSIRLKDKRTDKE-------DHFHYEGGIKAFVE 112

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              +N++ I   +F   T K       VE A+ W +     I  + N I   +GGTH  G
Sbjct: 113 YLNKNKTPIHPNVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVG 169

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R A+TR +  Y +      K  IS   DD     + ++SV + +P+F+ QTK KLVS +
Sbjct: 170 FRTAMTRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSE 229

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLP 450
            +  VE  + +    YL++NP +A  ++  +I+        R+ +    RK A+    LP
Sbjct: 230 VKTAVETLMNEKLVDYLMENPGDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLP 289

Query: 451 GKLADCSQNIA 461
           GKLADC +   
Sbjct: 290 GKLADCQERDP 300


>gi|46204675|ref|ZP_00049630.2| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), B subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 122

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 61/122 (50%), Positives = 80/122 (65%)

Query: 1   MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60
           M+D + DLF         +  + + +      PA A ++A   YDAS+I +LEGLEPVR 
Sbjct: 1   MSDPARDLFGPGAKPPAEAERRRRLTPVAAPQPAPAPETAEAGYDASAIEVLEGLEPVRR 60

Query: 61  RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120
           RPGMYIGGTDE+ALHHLF+EVIDN+MDE +AG+A+ IE+ L+    L V D   GIP + 
Sbjct: 61  RPGMYIGGTDERALHHLFAEVIDNSMDEAVAGHASFIELELEDTVCLVVTDIVLGIPFDP 120

Query: 121 HP 122
           HP
Sbjct: 121 HP 122


>gi|110224984|dbj|BAE97481.1| DNA gyrase subunit B [Streptococcus infantis]
          Length = 300

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 94/282 (33%), Positives = 146/282 (51%), Gaps = 12/282 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS +L V V +   I  Q++ RG  ++ LE      +K G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVRVHKNGKIHYQEYRRGHVVADLEVIGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PDP+IF +   FD  +L K  Q  A+L+  ++   +  +E  E     + + ++
Sbjct: 60  TIVHFTPDPEIFTETTTFDFDKLNKRIQELAFLNRGLQISITDKREGLE-----QTKHYH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+ +Y++   EN+ +I         E +     TVE A+ +     E   S+ N I 
Sbjct: 115 YEGGIASYVEYINENKDVIFDTPIYTDGEMEDI---TVEVAMQYTTGYHENVMSFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G R ALTR I  YA   +  +    ++  +D+      ++SV    P+F G
Sbjct: 172 THEGGTHEQGFRTALTRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
           QTKTKL + +  +       D F  +L++NP  A +++E  I
Sbjct: 232 QTKTKLGNSEVVKITNRLFSDAFSDFLLENPQIAKRIVEKGI 273


>gi|92918980|gb|ABE96838.1| DNA gyrase subunit B [Aeromonas molluscorum]
          Length = 321

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 113/333 (33%), Positives = 177/333 (53%), Gaps = 17/333 (5%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++     N  GT + F P   IF D   +    L K  +  
Sbjct: 1   RNGHVYEQTYHMGEPQAPLKQIGD-SNGTGTEVRFWPSATIFTDTL-YHYDILAKRLREL 58

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 59  SFLNSGVSIRLEVERDGRE-------VHFCYEGGIKAFVEYLNQNKTPIHQKVFHFSTEQ 111

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE---LTQ 350
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +    ++
Sbjct: 112 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDREDYSK 168

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
             +  +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++
Sbjct: 169 KAKMSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLE 228

Query: 411 NPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLADC +     +EL+IV
Sbjct: 229 NPGDAKIVVNKIIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYIV 288

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           EGDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 289 EGDSAGGSAKQGRNRKNQAILPLKGKILNVERA 321


>gi|110225004|dbj|BAE97491.1| DNA gyrase subunit B [Streptococcus pneumoniae]
          Length = 300

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 93/282 (32%), Positives = 145/282 (51%), Gaps = 12/282 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS +L V V +   I  Q++ RG  ++ LE      +K G
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEIVGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PDPKIF +   FD  +L K  Q  A+L+  ++   +  ++  E     + + ++
Sbjct: 60  TTVHFTPDPKIFTETTIFDFDKLNKRIQELAFLNRGLQISITDKRQGLE-----QTKHYH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+ +Y++   EN+ +I         E       TVE A+ +     E   S+ N I 
Sbjct: 115 YEGGIASYVEYINENKDVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G R ALTR I  YA   +  +    ++  +D+      ++SV    P+F G
Sbjct: 172 THEGGTHEQGFRTALTRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
           QTKTKL + +  +       + F  +L++NP  A +++E  I
Sbjct: 232 QTKTKLGNSEVVKITNRLFSEAFSDFLMENPQIAKRIVEKGI 273


>gi|30793644|gb|AAM52884.1| DNA gyrase subunit beta [Aeromonas schubertii]
          Length = 320

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 117/332 (35%), Positives = 176/332 (53%), Gaps = 16/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           RQ  ++ Q +  G P +PL++        GT + F P P IF D   F    L K  +  
Sbjct: 1   RQGHVYEQTYKLGEPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTL-FHYEILAKRLREL 58

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V    S +++  E         F + GG+K +++   ++++ I  ++     E+
Sbjct: 59  SFLNSGVSIRVSDERDGRE-------VHFCYEGGIKAFVEYLNQSKTPIHQKVLDFSAEQ 111

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH +G R ALTR +  Y +      
Sbjct: 112 DGI---GVEVAMQWNDGYQEGVYCFTNNIPQRDGGTHLAGFRAALTRTLNSYMDKEDYSK 168

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   S   DD+    V ++SV + +P+F+ QTK KLVS + +  VE A+ D    +L++N
Sbjct: 169 KAKTSASGDDVREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGDKLADFLLEN 228

Query: 412 PIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK R    RK A+    LPGKLADC +     +EL+IVE
Sbjct: 229 PGDAKIVVNKIIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 288

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 289 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 320


>gi|190569869|dbj|BAG48892.1| DNA gyrase subunit B [Bartonella clarridgeiae]
          Length = 325

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 112/334 (33%), Positives = 172/334 (51%), Gaps = 13/334 (3%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            I    F+ G+  S L+      ++ GT ITF P  + F     F+   L +  +  A+L
Sbjct: 1   KIHEMSFTHGVADSALKIVGDCDSESGTEITFLPSSETFT-MVEFNFETLERRLRELAFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +    +  +    +         ++ GGL  +++   +++  +         EK G 
Sbjct: 60  NSGIHILLTDQRRADVQSVE-----LHYKGGLVEFVKHIDQSKRALIDNPIYIANEKDGI 114

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
              +V+ A+ W +    ++  + N I   +GGTH +G R ALTR I  YAE +    K  
Sbjct: 115 ---SVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRSALTRQINGYAESSGIAKKEK 171

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +++  DD       ILSV + +P+F+ QTK KLVS + +  VEN + +    +L ++P E
Sbjct: 172 VNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVENLVNEGLSAWLEEHPNE 231

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A   +  V+E +  R   RK RE   RK A+    LPGKLADC +     +E+FIVEGDS
Sbjct: 232 AKIFISKVVEAAAAREAARKARELTRRKGALDITSLPGKLADCQERDPTKSEIFIVEGDS 291

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
           AGGSAK  R+R NQA+LPLRGKILNV  A  +++
Sbjct: 292 AGGSAKSGRSRQNQAILPLRGKILNVERARFDRM 325


>gi|4514435|dbj|BAA75416.1| DNA gyrase subunit B [Acinetobacter baumannii]
 gi|4514437|dbj|BAA75417.1| DNA gyrase subunit B [Acinetobacter baumannii]
          Length = 303

 Score =  151 bits (380), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 96/315 (30%), Positives = 156/315 (49%), Gaps = 16/315 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +LH+T+ R   I  Q++  G P  PL    +  +  G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSSKLHLTIYRAGQIHEQEYHHGDPQYPLRVIGET-DNTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F     F+   L +  +  ++L+  V+     ++   E         + 
Sbjct: 60  TTVRFWPSAETFSQTI-FNVEILARRLRELSFLNAGVRIVLRDERINLE-------HVYD 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   E ++ ++           G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLSEFVKYINEGKNHLNEIFHFTADADNGI---AVEVALQWNDSYQENVRCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+ +Y E      K  +++  DD       I+SV + +P+F+ 
Sbjct: 169 QKDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNR 440
           QTK KLVS + +  VE A+   F  YL++NP  A  +   +I         R+ +    R
Sbjct: 229 QTKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLAD 455
           K+A+    LPGKLAD
Sbjct: 289 KSALDIAGLPGKLAD 303


>gi|222481529|gb|ACJ48955.2| DNA gyrase subunit B [Pseudomonas oryzihabitans]
          Length = 328

 Score =  151 bits (380), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 112/339 (33%), Positives = 174/339 (51%), Gaps = 17/339 (5%)

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
            Q +  G+P +PL    +  +  GT++ F+P  + F +   F    L K  +  ++L+  
Sbjct: 1   EQVYVHGVPQAPLAVIGET-DTTGTQVHFKPSAETFSNI-QFSWDILAKRIRELSFLNSG 58

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFT-GKTEKKGTHR 299
           V      ++         ++E F + GGL+ ++     N++ ++       + E  G   
Sbjct: 59  VGIVLRDER-------TGKEELFKYEGGLRAFVDYLNTNKTAVNEVFHFQVQREDDGV-- 109

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS-- 356
             VE A+ W +     I  + N I   +GGTH +G R ALTR +  Y E     +     
Sbjct: 110 -GVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRNLNNYIEAEGLAKKFKVA 168

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
              DD       I+SV + +P+F+ QTK KLVS + +  VE  +   F  +L++NP EA 
Sbjct: 169 TTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAK 228

Query: 417 KLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            ++  +I+ +  R   RK R    RK A+    LPGKLADC +     +EL+IVEGDSAG
Sbjct: 229 AVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAG 288

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           GSAKQ RNR  QA+LPL+GKILNV  A  +K+ ++Q++ 
Sbjct: 289 GSAKQGRNRRTQAILPLKGKILNVEKARFDKMLSSQEVG 327


>gi|190569891|dbj|BAG48903.1| DNA gyrase subunit B [Bartonella tamiae]
          Length = 325

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 114/334 (34%), Positives = 174/334 (52%), Gaps = 13/334 (3%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            I    F+ G   +PL+       + GT ++F P  + F     FD   L +  +  A+L
Sbjct: 1   KIHEVSFTHGDADAPLKVVGDSGGETGTEVSFLPSAETFT-MVEFDFETLERRLRELAFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V+   +  +    +         ++ GGL  +++   +++  + +E      EK G 
Sbjct: 60  NSGVRILLTDRRHADLRQVE-----LHYDGGLVEFVKYIDQSKKPLIAEPIYIMGEKDG- 113

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
              TVE ++ W +    ++  + N I   +GGTH +G R ALTR +  YAE +    K  
Sbjct: 114 --MTVEVSMWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRGALTRQVNGYAESSGLAKKEK 171

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +S+  DD       ILSV + +P+F+ QTK KLVS + +  VE+ + +    +  ++P E
Sbjct: 172 VSLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPVVESLVNEALSTWFEEHPAE 231

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  L+  VIE +  R   RK RE   RK A+    LPGKLADC +     +E+FIVEGDS
Sbjct: 232 AKVLIGKVIEAAAAREAARKARELTRRKGALDISSLPGKLADCQERDPSKSEIFIVEGDS 291

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
           AGGSAK  R+R NQA+LPLRGKILNV  A  +++
Sbjct: 292 AGGSAKSGRSRQNQAILPLRGKILNVERARFDRM 325


>gi|62084078|dbj|BAD91446.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 300

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 99/302 (32%), Positives = 154/302 (50%), Gaps = 12/302 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS +L V V +   I  Q+F RG  ++ LE          
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVIGTTDVTG- 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PDP+IF +   FD   L K  Q  A+L+  +K   +  +   E     ++E F+
Sbjct: 60  TTVHFTPDPEIFTETTEFDYKVLAKRIQELAFLNRGLKISITDKRSGME-----QEEHFH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+ +Y++   + + +I         E +G     VE A+ +       + S+ N I 
Sbjct: 115 YEGGIGSYVEFLNDKKEVIFDTPIYTDGELEGI---AVEVAMQYTTSYHEVVMSFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G R ALTR I  YA+  +   +   ++  +D+      ++SV    P+F G
Sbjct: 172 THEGGTHEQGFRTALTRVINDYAKKNKILKENDDNLTGEDVREGLTAVISVKHPNPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + +  +       + F  +L++NP  A K++E  I  S+ R+  ++ REV RK
Sbjct: 232 QTKTKLGNSEVVKITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRK 291

Query: 442 TA 443
            +
Sbjct: 292 KS 293


>gi|93277216|gb|ABF06426.1| gyrase B [Streptomyces sp. M40]
          Length = 327

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 101/321 (31%), Positives = 163/321 (50%), Gaps = 16/321 (4%)

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA----- 252
           +  ++ GT +TF  DP IF     +    L +  Q  A+L+  ++   + ++E A     
Sbjct: 8   EPTDEHGTSVTFWADPDIFETT-EYSFETLSRRFQEMAFLNKGLRIRLTDERESAKATSG 66

Query: 253 ------EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
                 ++    +  ++++ GG+  +++     +  +          +      ++E A+
Sbjct: 67  ADEAGADEKAEVKSVDYHYEGGIVDFVKYLNSRKGDVVHPTVIDLEAEDKDKLLSLEVAM 126

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLM 363
            W       + S+ N I T EGGTHE G R ALT  I KYA   +   ++  ++  DD+ 
Sbjct: 127 QWNSSYTEGVYSFANIIHTHEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIR 186

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                I+SV + EP+F GQTKTKL + + +  V+  + +    +L +NP EA  ++   I
Sbjct: 187 EGLTAIISVKLSEPQFEGQTKTKLGNTEVKTFVQKVVYEHLADWLDRNPNEAADIIRKGI 246

Query: 424 ERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           + +  R+  RK R++ R+  +     LPGKL+DC  N     E+FIVEGDSAGGSAK  R
Sbjct: 247 QAATARVAARKARDLTRRKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGR 306

Query: 483 NRSNQAVLPLRGKILNVASAG 503
           N   QA+LP+RGKILNV  A 
Sbjct: 307 NPEYQAILPIRGKILNVEKAR 327


>gi|190569859|dbj|BAG48887.1| DNA gyrase subunit B [Bartonella alsatica]
          Length = 325

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 114/334 (34%), Positives = 170/334 (50%), Gaps = 13/334 (3%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            I    FS G+   PL+       + GT I F P  + F     FD   L +  +  A+L
Sbjct: 1   KIHEMSFSHGVADFPLKIIGDCDAESGTEIRFLPSSETFT-MVEFDFETLERRLRELAFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +      ++    +         ++ GGL  +++   + +  +        +EK G 
Sbjct: 60  NSGIHILLIDERHADVQTVE-----LHYEGGLIEFVKYIDQTKRALLDTPIYITSEKDG- 113

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
              +V+ A+ W +    ++  + N I   +GGTH  G R ALTR I  YAE +    K  
Sbjct: 114 --MSVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLVGFRSALTRQINGYAESSGIAKKEK 171

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +++  DD       ILSV + +P+F+ QTK KLVS + +  VEN + +    ++ ++P E
Sbjct: 172 VNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPVVENLVNEGLSIWMEEHPNE 231

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  L+  VIE +  R   RK RE   RK A+    LPGKLADC +     +E+FIVEGDS
Sbjct: 232 AKLLISKVIEAAAAREAARKARELTRRKGALDITSLPGKLADCQERDPAKSEIFIVEGDS 291

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
           AGGSAK  R+R NQA+LPLRGKILNV  A  +++
Sbjct: 292 AGGSAKSGRSRQNQAILPLRGKILNVERARFDRM 325


>gi|260323637|dbj|BAI44263.1| DNA topoisomerase II [Trichophyton rubrum]
 gi|260323639|dbj|BAI44264.1| DNA topoisomerase II [Trichophyton mentagrophytes]
          Length = 234

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 84/215 (39%), Gaps = 6/215 (2%)

Query: 72  KALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKST 129
             L+ +F E++ NA D        + I V+LD   G ++V +NGRGIPVE H K      
Sbjct: 18  PGLYKIFDEILVNAADNKQNDPNMSEIRVTLDKEAGEISVWNNGRGIPVEIHKK-EQIYI 76

Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK--FSRG 187
            E+I   L     +++   +++GG +G G  + N  S E  V  A        K  ++  
Sbjct: 77  PELIFGHLLTSSNYNDMQEKVTGGRNGYGAKLCNIFSKEFTVETADSKQKKKFKLTWTNN 136

Query: 188 IPLSPLEKKEKVRNKRGTRITFRPDP-KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           +      K  + +    T++TF+PD  K   D    D   L+K        +       +
Sbjct: 137 MSTMGKAKITECKGDDYTKVTFKPDFAKFGMDGMDDDFEALVKRRVYDMAGTCGTAVKLN 196

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
             +   + +    +         +    T   +++
Sbjct: 197 GTRIPIKSFKKYMEMYTKAIKAERGEDPTSASDKN 231


>gi|164456745|dbj|BAF97865.1| gyrase B subunit [Salinivibrio costicola subsp. costicola]
          Length = 281

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 82/280 (29%), Positives = 144/280 (51%), Gaps = 13/280 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS++L +T+ R        FS G PL PL +  +  ++ GTR
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKLELTIWRNGYAHQLNFSHGEPLGPLVQLGET-DQTGTR 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F P  + F D   F+   L K  +  ++L+  V      ++E        + + F + 
Sbjct: 60  IRFWPSEETFTDIH-FNYEILAKRLRELSFLNSGVSIRLIDERE------EDKSDHFKYE 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG++ +++   + ++ I   +F  +  +      +VE ++ W +     I  + N I   
Sbjct: 113 GGIRAFVEHLNKKKTAIHPSVFHFEHMRDD--GVSVEVSMQWNDGYQENIYCFTNNIPQR 170

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QT
Sbjct: 171 DGGTHLAGFRGALTRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVVSVKVPDPKFSSQT 230

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
           K KLVS + +  VE+A+      +L+++P +A  +   +I
Sbjct: 231 KDKLVSSEVKSAVESAMSSHLSDFLIEHPADAKVVCSKII 270


>gi|146431206|gb|ABQ40586.1| DNA gyrase B subunit [Vibrio harveyi]
          Length = 272

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 84/282 (29%), Positives = 145/282 (51%), Gaps = 13/282 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       ++ GT+I F
Sbjct: 1   VSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F +   F    L K  +  ++L+  V      ++E        + + F F GG+
Sbjct: 60  WPSAETFSN-TEFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KSDHFMFEGGI 112

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           + +++    N++ I  +IF    E++     +VE A+ W +     I  + N I   +GG
Sbjct: 113 QAFVEHLNTNKTPIIEKIFHFDFERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGG 170

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QTK K
Sbjct: 171 THLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDK 230

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           LVS + +  VE+A+ +    +L++NP EA  +   +I+ +  
Sbjct: 231 LVSSEVKSAVESAMGEKLSEFLIENPAEAKMVCSKIIDAARA 272


>gi|190569861|dbj|BAG48888.1| DNA gyrase subunit B [Bartonella birtlesii]
          Length = 325

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 113/334 (33%), Positives = 171/334 (51%), Gaps = 13/334 (3%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            I    F+ GI  SPL+       + GT ++F P  + F     FD   L +  +  A+L
Sbjct: 1   KIHEMSFTHGIADSPLKIVGDCDRESGTEVSFLPSSETFT-MVEFDFETLERRLRELAFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +      ++    +         ++ GGL  +++   + +  +        +EK G 
Sbjct: 60  NSGIHILLVDERHADIRSVE-----LHYEGGLIEFVKYIDQTKKALLDTPIYITSEKDGI 114

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
              +V+ A+ W +    ++  + N I   +GGTH  G R ALTR I  YAE +    K  
Sbjct: 115 ---SVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLIGFRSALTRQINGYAESSGIAKKEK 171

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +++  DD       ILSV + +P+F+ QTK KLVS + +  VEN + +    +L ++P E
Sbjct: 172 VNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPVVENLVNEGLSTWLEEHPNE 231

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  L+  V+E +  R   RK RE   RK A+    LPGKLADC +     +E+FIVEGDS
Sbjct: 232 AKLLISKVVEAATAREAARKARELTRRKGALDITSLPGKLADCQERDPAKSEIFIVEGDS 291

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
           AGGSAK  R+R NQA+LPLRGKILN   A  +++
Sbjct: 292 AGGSAKSGRSRQNQAILPLRGKILNEERARFDRM 325


>gi|190569863|dbj|BAG48889.1| DNA gyrase subunit B [Bartonella bovis]
          Length = 325

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 119/334 (35%), Positives = 179/334 (53%), Gaps = 13/334 (3%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            I +  F+RG+  SPL+       + GT I+F P+P+IF     FD   L +  +  A+L
Sbjct: 1   KIHAMSFTRGVADSPLKIVGDCDVESGTEISFLPNPEIFTKV-EFDFETLERRLRELAFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V    +  +    +         ++ GGL  +++    ++ ++  +     +EK G 
Sbjct: 60  NSGVHILLTDQRHADVQSVE-----LHYEGGLVEFVKYIDRSKKVLIDDPIYITSEKDG- 113

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               V+ A+ W +    +   + N I   +GGTH +G R ALTR I  YAEL+    K  
Sbjct: 114 --MNVDVALWWNDSYHEKDLCFTNNIPQRDGGTHLAGFRSALTRQINGYAELSGITKKEK 171

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +++  DD       ILSV + +P+F+ QTK KLVS + +  VEN + +    +L ++P E
Sbjct: 172 VNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVENLVNEGLSAWLEEHPNE 231

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  L+  V+E +  R   RK RE   RK A+    LPGKLADC +     +E+FIVEGDS
Sbjct: 232 AKILISKVVEAAAAREAARKARELTRRKGALDITSLPGKLADCQERDPTKSEIFIVEGDS 291

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
           AGGSAK  R+R NQA+LPLRGKILNV  A  +++
Sbjct: 292 AGGSAKSGRSRQNQAILPLRGKILNVERARFDRM 325


>gi|284929891|gb|ADC30031.1| DNA gyrase subunit B [Oscillatoria sp. PCC 9631]
          Length = 311

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 92/299 (30%), Positives = 146/299 (48%), Gaps = 3/299 (1%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E  LT LHAGGKF    Y++SGGLHGVG+SVVNALS+ L VTV R    +SQ+F RG P 
Sbjct: 1   ETGLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSEWLEVTVFRDKKEYSQRFERGTPA 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           + L  K     + GT ++F PD  IF     FD   +    +  AYL+  VK   +  + 
Sbjct: 61  TELTSKPIKEARTGTSVSFLPDTSIFTTGIEFDCDTIASRLRELAYLNAGVKITLTDSRL 120

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                  P  E + + GG++ Y+     ++  +  +I     E+    +  V        
Sbjct: 121 ELLNRENPRIETYRYEGGIREYIAYMNNDKQPLHEDIIYTCGERSNV-QIEVALQWCTDA 179

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVG 368
            +  +  + N I T +GGTH  GL+  LTR +   A      +    ++  +++      
Sbjct: 180 YSDTVLGFANNIRTIDGGTHLEGLKTVLTRTLNAIARKRNKLKEGDANLGGENIREGLTA 239

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
           ++S  + +PEF GQTKT+L + + +  V++ + +    YL  NP  A  ++E  I+  +
Sbjct: 240 VISAKVPDPEFEGQTKTRLGNPEVRGIVDSLVGEALTEYLEFNPGVADAVIEKAIQAFK 298


>gi|66271256|gb|AAY43841.1| DNA gyrase subunit B [Vibrio sp. NRW 9805]
          Length = 265

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 84/275 (30%), Positives = 144/275 (52%), Gaps = 13/275 (4%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-D 59

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
           + GT+I F P  + F +   F    L K  +  ++L+  V      ++E        + +
Sbjct: 60  QTGTQIRFWPSAETFTN-IEFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KSD 112

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F F GG++ +++    N++ I  +IF    E++      VE A+ W +     I  + N
Sbjct: 113 HFMFEGGIQAFVEHLNTNKTPIIEKIFHFDFERED--GIAVEVAMQWNDGFQENIYCFTN 170

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+
Sbjct: 171 NIPQRDGGTHLAGFRAALTRTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPK 230

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
           F+ QTK KLVS +    VE+++ +    +L++NP 
Sbjct: 231 FSSQTKDKLVSSEVNSAVESSMGEKLSEFLIENPT 265


>gi|190569893|dbj|BAG48904.1| DNA gyrase subunit B [Bartonella taylorii]
          Length = 325

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 114/334 (34%), Positives = 171/334 (51%), Gaps = 13/334 (3%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            I    F+ G+  SPL+       + GT I F P  + F     FD   L +  +  A+L
Sbjct: 1   KIHEMSFTHGVADSPLKIVGDCDAESGTEIRFLPSSETFT-MVEFDFETLERRLRELAFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +      ++    +         ++ GGL  +++   + +  +        +EK G 
Sbjct: 60  NSGIHILLVDERHADIQSVE-----LHYDGGLIEFVKYIDQTKKPLLDTPIYITSEKDG- 113

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
              +V+ A+ W +    ++  + N I   +GGTH  G R ALTR I  YAE +    K  
Sbjct: 114 --MSVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLIGFRSALTRQINGYAESSGIAKKEK 171

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           I++  DD       ILSV + +P+F+ QTK KLVS + +  VEN + +    +L ++P E
Sbjct: 172 INLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVENLVNEGLSAWLEEHPNE 231

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  ++  V+E +  R   RK RE   RK A+    LPGKLADC +     +E+FIVEGDS
Sbjct: 232 AKLIISKVVEAATAREAARKARELTRRKGALDITSLPGKLADCQERDPAKSEIFIVEGDS 291

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
           AGGSAK  R+R NQA+LPLRGKILNV  A  +++
Sbjct: 292 AGGSAKSGRSRQNQAILPLRGKILNVERARFDRM 325


>gi|12060212|dbj|BAB20460.1| b subunit of GyrB typeII topoisomerase [Pseudomonas putida]
          Length = 305

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 98/316 (31%), Positives = 160/316 (50%), Gaps = 15/316 (4%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+ +Y++SGGLHGVG+SVVNALS++L +TV R   I+ Q +  G+P +P+          
Sbjct: 1   DDYSYKVSGGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGD-SETT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT I F+P  + F +   F    L K  +  ++L+  V      ++   E       E F
Sbjct: 60  GTHIHFKPSAETFKNIH-FSWDILAKRIRELSFLNSGVGILLKDERSGKE-------EFF 111

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            + GGL+ +++    N++ ++S++F    ++       VE A+ W +     +  + N I
Sbjct: 112 KYEGGLRAFVEYLNTNKTPVNSQVFHFNVQRDD--GVGVEVALQWNDSFNENLLCFTNNI 169

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH  G R +LTR +  Y E      K  ++   DD       I+SV + +P+F+
Sbjct: 170 PQRDGGTHLVGFRSSLTRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFS 229

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVN 439
            QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    
Sbjct: 230 SQTKDKLVSSEVKTAVEQEMNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTR 289

Query: 440 RKTAIRKLRLPGKLAD 455
           RK A+    LPGKLAD
Sbjct: 290 RKGALDIAGLPGKLAD 305


>gi|169248052|gb|ACA51809.1| DNA gyrase subunit B [Aliivibrio logei]
          Length = 321

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 116/330 (35%), Positives = 168/330 (50%), Gaps = 13/330 (3%)

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
            Q +  G+P +PL       +  GT+I F P  + F +   F    L K  +  ++L+  
Sbjct: 1   QQIYCHGVPQAPLAVIG-TTDTTGTKIRFWPSDQTFANI-EFVYDILAKRLRELSFLNSG 58

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300
           V       +E        + + F F GG+K ++     N++ +  +IF    E+K     
Sbjct: 59  VSIRLQDMRE------EDKSDHFMFEGGIKAFVTHLNRNKTPVHQKIFYFDAERK-EDGI 111

Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISI 357
            VE A+ W +     I  Y N I   +GG H SG R ALTR +  + +      K   S 
Sbjct: 112 VVEVAMQWNDSYQENIFCYTNNIPQRDGGAHLSGFRSALTRTLNSFMDKEGFSKKAKSSA 171

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
             DD       ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +L +NP EA  
Sbjct: 172 SGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLAEFLAENPGEAKM 231

Query: 418 LLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476
           +   +I+ +  R   RK R    RK A+    LPGKLADC +     +EL+IVEGDSAGG
Sbjct: 232 VCSKIIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPAQSELYIVEGDSAGG 291

Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEK 506
           SAKQ RNR NQA+LPL+GKILNV  A  +K
Sbjct: 292 SAKQGRNRKNQAILPLKGKILNVEKARFDK 321


>gi|4514471|dbj|BAA75434.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 303

 Score =  150 bits (378), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 96/315 (30%), Positives = 156/315 (49%), Gaps = 16/315 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L +T+ R   I  Q++  G P+ PL+    +    G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSSKLELTIHRAGHIHQQEYKHGDPVYPLKVIGDI-ETTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F     F+   L +  +  ++L+  V+     ++   E         F 
Sbjct: 60  TTVRFWPSAETFSQTI-FNVDILARRLRELSFLNAGVRIVLRDERVALE-------HIFD 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           F GGL  +++   + ++ ++         + G     VE A+ W +     +  + N I 
Sbjct: 112 FEGGLSEFVKYINQGKTHLNEIFHFTTQAENGI---GVEVALQWNDTYQENVRCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  +++  DD       I+SV + +P+F+ 
Sbjct: 169 QKDGGTHLAGFRAALTRGLNSYMENENLLKKEKVAVTGDDAREGLTAIVSVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNR 440
           QTK KLVS + +  VE A+   F  YL++NP  A  +   +I         R+ +    R
Sbjct: 229 QTKEKLVSSEVKPAVEQAMNKAFSEYLLENPQAAKSIAGKIIDAARARDAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLAD 455
           K+A+    LPGKLAD
Sbjct: 289 KSALDIAGLPGKLAD 303


>gi|327335376|gb|AEA49883.1| DNA gyrase subunit B [Bacillus licheniformis]
          Length = 291

 Score =  150 bits (378), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 88/269 (32%), Positives = 139/269 (51%), Gaps = 12/269 (4%)

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG SVVNALS EL VTV R   +  Q+F RG+P + L+         GT   F+PDP
Sbjct: 1   LHGVGASVVNALSTELDVTVYRDGKVHYQEFERGVPKADLKVIGDT-EVTGTTTHFKPDP 59

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           +IF +   +D   L    +  A+L+  VK      +E  E+       ++ + GG+K+Y+
Sbjct: 60  EIFTETTEYDYDTLATRVRELAFLTKGVKITIEDKREGKERKN-----DYCYEGGIKSYV 114

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +    +R ++  E    +  K G    TVE A+ + +     I S+ N I T EGGTHE+
Sbjct: 115 EHLNRSREVVHEEPVYIEGSKDGI---TVEVALQYNDSYTSNIYSFANNIHTYEGGTHEA 171

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G +  LTR I  YA       +   ++  +D+      I+S+   +P+F GQTKTKL + 
Sbjct: 172 GFKTGLTRVINDYARRNGVFKESDPNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNS 231

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLL 419
           +A+   +    +  + +L++NP  A K++
Sbjct: 232 EARTITDALFSEALEKFLLENPDSAKKIV 260


>gi|308153094|dbj|BAJ22136.1| DNA gyrase subunit B [Streptomyces racemochromogenes]
          Length = 324

 Score =  150 bits (378), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 90/314 (28%), Positives = 157/314 (50%), Gaps = 17/314 (5%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y +SGGLHGVG+SVVNALS ++ V V      ++Q +  G+P +PL K E+  ++ GT
Sbjct: 1   GGYAVSGGLHGVGVSVVNALSTKVAVEVKTDGHRWTQDYKLGVPTAPLAKNEET-DETGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE------------ 253
            +TF  D  IF     +    L +  Q  A+L+  +    + ++E A+            
Sbjct: 60  SVTFWADGDIFET-TEYSFETLSRRFQEMAFLNKGLTLTLTDERESAKATVGADDPDADA 118

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP 313
                   ++Y+ GG+  +++     +  +          +      +VE A+ W  +  
Sbjct: 119 AEPTARTVKYYYEGGIVDFVKYLNSRKGELIHPTVIDVEAEDKERMLSVEIAMQWNSQYS 178

Query: 314 E-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGIL 370
           E + S+ NTI T EGGTHE G R ALT  + +YA   +   ++  ++  +D+      I+
Sbjct: 179 EGVYSFANTIHTHEGGTHEEGFRAALTGLVNRYARDKKLLREKDDNLAGEDIREGLTAII 238

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV + EP+F GQTKTKL + +A+  V+  + +    +  +NP+EA  ++   I+ +  R+
Sbjct: 239 SVKLGEPQFEGQTKTKLGNTEAKTFVQKVVHEHLSDWFDRNPVEAADIVRKAIQAATARV 298

Query: 431 RRRKQREVNRKTAI 444
             RK R++ R+  +
Sbjct: 299 AARKARDLTRRKGL 312


>gi|4514495|dbj|BAA75446.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 303

 Score =  150 bits (378), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 96/315 (30%), Positives = 156/315 (49%), Gaps = 16/315 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L +T+ R   I  Q++  G P+ PL+    V    G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSSKLELTIHRAGHIHQQEYKHGDPVYPLKIVGDV-ETTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F     F+   L +  +  ++L+  V+     ++   E         F 
Sbjct: 60  TIVRFWPSTETFSQTI-FNVDILARRLRELSFLNAGVRIVLRDERVALE-------HVFD 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   + ++ ++         + G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLSEFVKYINQGKTHLNEIFHFTTQAENGI---GVEVALQWNDTYQENVRCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  +++  DD       I+SV + +P+F+ 
Sbjct: 169 QKDGGTHLAGFRAALTRGLNSYMENENLLKKEKVAVTGDDAREGLTAIVSVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNR 440
           QTK KLVS + +  VE A+   F  YL++NP  A  +   +I         R+ +    R
Sbjct: 229 QTKEKLVSSEVKPAVEQAMNKAFSEYLLENPQAAKSIAGKIIDAARARDAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLAD 455
           K+A+    LPGKLAD
Sbjct: 289 KSALDIAGLPGKLAD 303


>gi|290795091|gb|ADD64561.1| DNA gyrase B [Vibrio cyclitrophicus]
 gi|290795093|gb|ADD64562.1| DNA gyrase B [Vibrio cyclitrophicus]
 gi|290795095|gb|ADD64563.1| DNA gyrase B [Vibrio cyclitrophicus]
          Length = 304

 Score =  150 bits (378), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 87/282 (30%), Positives = 146/282 (51%), Gaps = 13/282 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +S G P +PL       +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGDT-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I F P  + F +   F    L K  +  ++L+  V      ++E        + + F 
Sbjct: 60  TEIRFWPSEETFTN-IEFHYDILAKRLRELSFLNSGVSIKLIDERE------EDKMDHFE 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG++ +++    N++ I  +IF   +E++     TVE A+ W +     I  + N I 
Sbjct: 113 YEGGIQAFVEHLNTNKTPIIQKIFHFNSERED--GITVEVAMQWNDGYQENIYCFTNNIP 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GG H +G R ALTR +  + +      K   S   DD       I+SV + +P+F+ 
Sbjct: 171 QRDGGAHLAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSS 230

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
           QTK KLVS + +  VE+ + +    +L++NP EA  +   +I
Sbjct: 231 QTKDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKII 272


>gi|4514473|dbj|BAA75435.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 303

 Score =  150 bits (378), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 96/315 (30%), Positives = 156/315 (49%), Gaps = 16/315 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L +T+ R   I  Q++  G P+ PL+    +    G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSSKLELTIHRAGHIHQQEYKHGDPVYPLKVVGDI-ETTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F     F+   L +  +  ++L+  V+     ++   E         F 
Sbjct: 60  TTVRFWPSAETFSQTI-FNVDILARRLRELSFLNAGVRIVLRDERVALE-------HIFD 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           F GGL  +++   + ++ ++         + G     VE A+ W +     +  + N I 
Sbjct: 112 FEGGLSEFVKYINQGKTHLNEIFHFTTQAENGI---GVEVALQWNDTYQENVRCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  +++  DD       I+SV + +P+F+ 
Sbjct: 169 QKDGGTHLAGFRAALTRGLNSYMENENLLKKEKVAVTGDDAREGLTAIVSVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNR 440
           QTK KLVS + +  VE A+   F  YL++NP  A  +   +I         R+ +    R
Sbjct: 229 QTKEKLVSSEVKPAVEQAMNKAFSEYLLENPQAAKSIAGKIIDAARARDAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLAD 455
           K+A+    LPGKLAD
Sbjct: 289 KSALDIAGLPGKLAD 303


>gi|190569865|dbj|BAG48890.1| DNA gyrase subunit B [Bartonella capreoli]
          Length = 325

 Score =  150 bits (378), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 117/334 (35%), Positives = 177/334 (52%), Gaps = 13/334 (3%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            I    F+RG+   PL+       + GT I+F P  +IF     FD   L +  +  A+L
Sbjct: 1   KIHEMSFTRGVADCPLKIVGDCDAESGTEISFLPSSEIFTKT-KFDFETLERRLRELAFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V    +  +         +  + ++ GGL  +++   +++ ++        +EK G 
Sbjct: 60  NSGVHILLTDQRHADV-----QSVKLHYDGGLIEFVKYIDQSKKVLIDNPIYITSEKDG- 113

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
              +VE A+ W +    ++  + N I   +GGTH +G R ALTR I  YAE +    K  
Sbjct: 114 --MSVEVALWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRSALTRQINGYAESSGITKKEK 171

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +++  DD       ILSV + +P+F+ QTK KLVS + +  VEN + +    +L ++P E
Sbjct: 172 VNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVENLVNEGLSAWLEEHPNE 231

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  L+  V+E +  R   RK RE   RK A+    LPGKLADC +     +E+FIVEGDS
Sbjct: 232 AKILISKVVEAAAAREAARKARELTRRKGALDITSLPGKLADCQERDPTKSEIFIVEGDS 291

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
           AGGSAK  R+R NQA+LPLRGKILNV  A  +++
Sbjct: 292 AGGSAKSGRSRQNQAILPLRGKILNVERARFDRM 325


>gi|148762363|dbj|BAF63883.1| DNA gyrase subunit B [Halobacillus karajensis]
          Length = 329

 Score =  150 bits (378), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 107/339 (31%), Positives = 167/339 (49%), Gaps = 17/339 (5%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG SVVNALS+ L V + R    F Q+F  G       + +    K GT I
Sbjct: 1   YKVSGGLHGVGASVVNALSEWLEVHICRDGEKFCQRFENGGVPVTSLENKGTTRKTGTTI 60

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PDP IF     F+   L +  +  A+L    +     ++          +EE+ +  
Sbjct: 61  RFKPDPTIFST-TKFNFETLSERLREAAFLLKGFRIVLIDER------NETVREEYQYDD 113

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEG 327
           GL ++++   E +  + S +    T  +       ++   + E    I S+ N + T +G
Sbjct: 114 GLVSFVEYLNEEKDTLHSVVSFEGTHGEIEADFAFQFNDGFAE---NILSFVNNVRTKDG 170

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE--PEFAGQT 383
           GTHESG + A+TR    YA   Q   ++  ++  +D+      ++S  I E   +F GQT
Sbjct: 171 GTHESGAKTAITRVFNDYARRAQLLKEKDKNLEGNDIREGFTAVISARIPEGLLQFEGQT 230

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443
           K+KL + +A+  V+  + +   ++L +NP  A+ L++  I+  E R   RK RE  R   
Sbjct: 231 KSKLGTSEARSAVDGVVAEQLSYFLEENPDVASMLIKKAIKAKEAREAARKAREDARSGK 290

Query: 444 IRK---LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
            +K     L GKL       A   EL++VEGDSAGGSAK
Sbjct: 291 KKKRKETLLSGKLTPAQSKNAQKNELYLVEGDSAGGSAK 329


>gi|164456639|dbj|BAF97812.1| gyrase B subunit [Vibrio alginolyticus]
          Length = 271

 Score =  150 bits (378), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 84/281 (29%), Positives = 145/281 (51%), Gaps = 13/281 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K GT+I F
Sbjct: 1   VSGGLHGVGVSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQIRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F +   F    L K  +  ++L+  V      ++E        + + F + GG+
Sbjct: 60  WPSAETFSN-TEFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KHDHFMYEGGI 112

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           + ++     N++ I  +IF   +E++     +VE A+ W +     I  + N I   +GG
Sbjct: 113 QAFVDHLNTNKTPIIEKIFHFNSERED--GISVEVAMQWNDGFQENIFCFTNNIPQRDGG 170

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QTK K
Sbjct: 171 THLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDK 230

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
           LVS + +  VE+A+ +    +L++NP EA  +   +I+ + 
Sbjct: 231 LVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAAR 271


>gi|190569883|dbj|BAG48899.1| DNA gyrase subunit B [Bartonella phoceensis]
          Length = 325

 Score =  150 bits (378), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 113/334 (33%), Positives = 170/334 (50%), Gaps = 13/334 (3%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            +    F+ G+  SPL+       + GT I F P  + F     FD   L +  +  A+L
Sbjct: 1   KVHKMSFTHGVADSPLKIVGDCDTESGTEIRFLPSSETFT-MVEFDFETLERRLRELAFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +      ++    +         ++ GGL  +++   + +  +        +EK G 
Sbjct: 60  NSGIHILLVDERHADIQSVE-----LHYEGGLIEFVKYIDQTKKALLDTPIYITSEKDG- 113

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               V+ A+ W +    ++  + N I   +GGTH  G R ALTR I  YAE +    K  
Sbjct: 114 --MNVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLVGFRSALTRQINGYAESSGIAKKEK 171

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +++  DD       ILSV + +P+F+ QTK KLVS + +  VEN + +    +L ++P E
Sbjct: 172 VNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVENLVNEGLSIWLEEHPNE 231

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  L+  V+E +  R   RK RE   RK A+    LPGKLADC +     +E+FIVEGDS
Sbjct: 232 AKLLISKVVEAATAREAARKARELTRRKGALDITSLPGKLADCQERDPAKSEIFIVEGDS 291

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
           AGGSAK  R+R NQA+LPLRGKILNV  A  +++
Sbjct: 292 AGGSAKSGRSRQNQAILPLRGKILNVERARFDRM 325


>gi|190569875|dbj|BAG48895.1| DNA gyrase subunit B [Bartonella japonica]
          Length = 325

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 113/334 (33%), Positives = 171/334 (51%), Gaps = 13/334 (3%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            I    F+ G+   PL+       + GT I F P P+ F     FD   L +  +  A+L
Sbjct: 1   KIHETSFTHGVADFPLKVVGDCDTESGTEIRFLPSPETFT-MVEFDFETLERRLRELAFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +      ++         +  + ++ GGL  +++   + +  +        +EK   
Sbjct: 60  NSGIHILLVDERHADV-----QSVKLHYEGGLVEFVKYIDQTKKALLDSPIYITSEKDN- 113

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
              +V+ A+ W +    ++  + N I   +GGTH  G R ALTR I  YAE +    K  
Sbjct: 114 --MSVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLIGFRSALTRQINGYAESSGIAKKEK 171

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +++  DD       ILSV + +P+F+ QTK KLVS + +  VEN + +    +L ++P E
Sbjct: 172 VNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVENLVNEGLSAWLEEHPNE 231

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  L+  V+E +  R   RK RE   RK A+    LPGKLADC +     +E+FIVEGDS
Sbjct: 232 AKLLISKVVEAATAREAARKARELTRRKGALDITSLPGKLADCQERDPAKSEIFIVEGDS 291

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
           AGGSAK  R+R NQA+LPLRGKILNV  A  +++
Sbjct: 292 AGGSAKSGRSRQNQAILPLRGKILNVERARFDRM 325


>gi|19909677|dbj|BAB87034.1| DNA gyrase subunit B [Thermotoga sp. MI9]
          Length = 245

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 89/254 (35%), Positives = 133/254 (52%), Gaps = 15/254 (5%)

Query: 136 TLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK 195
            LHAGGKF   +Y+ISGGLHGVG+SVVNALS+ L V V R   I+ Q++ RG P++P+E 
Sbjct: 1   VLHAGGKFSKDSYKISGGLHGVGVSVVNALSEWLEVRVHRDGKIYRQRYERGKPVTPVEV 60

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
             +  +K GT + F+PDP IF +   FD   L    +  A+L   +K  +       +K 
Sbjct: 61  IGET-DKHGTIVRFKPDPLIFSE-TEFDPDVLEHRLREIAFLVPGLKIEFEDRINGEKKT 118

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----KKGTHRGTVEWAIAWCEE 311
                  F F GG+  Y++     +  +   I   +TE    K G     VE A  + + 
Sbjct: 119 -------FKFDGGIVEYVKYLNRGKKALHDVIHIKRTEKVKTKNGEDEVIVEIAFQYTDS 171

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGI 369
              +I S+ NTI T +GGTH +  +  LTR + +Y +     K+  S   +D+      +
Sbjct: 172 YSEDIVSFANTIKTVDGGTHVTAFKSTLTRLMNEYGKKHNFLKKDDSFQGEDVREGLTAV 231

Query: 370 LSVFIREPEFAGQT 383
           +SV+++ PEF GQT
Sbjct: 232 ISVYVKNPEFEGQT 245


>gi|190569901|dbj|BAG48908.1| DNA gyrase subunit B [Bartonella washoensis]
          Length = 325

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 116/334 (34%), Positives = 173/334 (51%), Gaps = 13/334 (3%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            I    F+ G+  SPL+       + GT I F P  + F     FD   L +  +  A+L
Sbjct: 1   KIHEMSFTHGVADSPLKIIGDCDAESGTEIRFLPSSETFT-MVEFDFETLERRLRELAFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V      ++    K         ++ GGL  +++   +++  + +      +EK G 
Sbjct: 60  NSGVYILLVDERHADIKSVE-----LHYEGGLIEFVKYIDQSKKALLNNPIYIASEKDG- 113

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
              +V+ A+ W +    ++  + N I   +GGTH  G R ALTR I  YAE +    K  
Sbjct: 114 --MSVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLIGFRSALTRQINGYAESSGIAKKEK 171

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +++  DD       ILSV + +P+F+ QTK KLVS + +  VEN + +    +L ++P E
Sbjct: 172 VNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVENLVNEGLSVWLEEHPNE 231

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  L+  V+E +  R   RK RE   RK A+    LPGKLADC +     +E+FIVEGDS
Sbjct: 232 AKLLISKVVEAATAREAARKARELTRRKGALDITSLPGKLADCQERDPAKSEIFIVEGDS 291

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
           AGGSAK  R+R NQA+LPLRGKILNV  A  +++
Sbjct: 292 AGGSAKSGRSRQNQAILPLRGKILNVERARFDRM 325


>gi|30793740|gb|AAM52932.1| DNA gyrase subunit beta [Aeromonas eucrenophila]
          Length = 321

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 111/332 (33%), Positives = 174/332 (52%), Gaps = 15/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++     +  GT + F P P IF D   +    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFSDTL-YHYEILAKRLREL 59

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+  +++   +N++ I  ++F   TE+
Sbjct: 60  SFLNSGVSIRLQDERDGRE-------VHFCYEGGIGAFVEYLNQNKTPIHQKVFHFSTEQ 112

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE  + W +     +  + N I   +GG H  G R ALTR +  Y +      
Sbjct: 113 DGI---GVEVPMQWNDAYQEGVYCFTNNIPQRDGGNHLVGFRTALTRTLNTYMDKEDYSK 169

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  +E A+ +    +L++N
Sbjct: 170 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTALEQAMGEKLAEFLLEN 229

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 230 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 289

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 290 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 321


>gi|58415318|emb|CAH04917.1| DNA gyrase subunit B [Subtercola boreus]
 gi|117675815|emb|CAL69178.1| DNA gyrase subunit B [Subtercola boreus]
          Length = 306

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 97/309 (31%), Positives = 151/309 (48%), Gaps = 10/309 (3%)

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            FD   L    Q  A+L+  ++   +  +   +         + +  GL  Y++     +
Sbjct: 1   EFDYETLRARFQQMAFLNKGLRLTLTDQRGDED-----VVVSYLYEKGLVDYVEYLNRAK 55

Query: 281 SLISSEIFTGKTEKK-GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
                       E +    + ++E A+ W       + +Y NTI T EGGTHE G R AL
Sbjct: 56  KNELVHEEVISFESEAPDRKISLEVAMQWTNGYTESVHTYANTINTHEGGTHEEGFRAAL 115

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           T  + KYA   Q   ++  ++  DD+      ++S+ + EP+F GQTKTKL + +A+  V
Sbjct: 116 TSLVNKYAREKQILKEKDENLTGDDVREGLTAVVSIKLAEPQFEGQTKTKLGNTEAKAFV 175

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLAD 455
           +         +  + P E  +++   I+ S+ R+  RK RE  R+  +     +PGKL D
Sbjct: 176 QRVAGKELADWFDRKPTEVREIIRKAIQASQARMAARKAREQTRRKGLLEGGGMPGKLKD 235

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           CS      +E+FIVEGDSAGGSA Q RN   QA+LPLRGKILNV  A  ++   N ++  
Sbjct: 236 CSSRDPVKSEIFIVEGDSAGGSAIQGRNPETQAILPLRGKILNVEKARLDRALGNNEVQA 295

Query: 516 LVQALGCRT 524
           ++ A G   
Sbjct: 296 MITAFGAGI 304


>gi|190569867|dbj|BAG48891.1| DNA gyrase subunit B [Bartonella chomelii]
          Length = 325

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 118/334 (35%), Positives = 178/334 (53%), Gaps = 13/334 (3%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            I    F+RG+  SPL+       + GT I+F P  +IF     FD   L +  +  A+L
Sbjct: 1   KIHEMSFTRGVADSPLKIVGDCDAESGTEISFLPSSEIFTKT-KFDFETLERRLRELAFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V    +  +         +  + ++ GGL  +++   +++ ++        +EK G 
Sbjct: 60  NSGVHILLTDQRHADV-----QSVKLHYDGGLIEFVKYIDQSKKVLIDNPIYITSEKDG- 113

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
              +VE A+ W +    ++  + N I   +GGTH +G R ALTR I  YAE +    K  
Sbjct: 114 --MSVEVALWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRSALTRQINGYAESSGITKKEK 171

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +++  DD       ILSV + +P+F+ QTK KLVS + +  VEN + +    +L ++P E
Sbjct: 172 VNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVENLVNEGLSAWLEEHPNE 231

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  L+  V+E +  R   RK RE   RK A+    LPGKLADC +     +E+FIVEGDS
Sbjct: 232 AKILISKVVEAAAAREAARKARELTRRKGALDITSLPGKLADCQERDPTKSEIFIVEGDS 291

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
           AGGSAK  R+R NQA+LPLRGKILNV  A  +++
Sbjct: 292 AGGSAKSGRSRQNQAILPLRGKILNVERARFDRM 325


>gi|156536676|gb|ABU80442.1| gyrase B [Photorhabdus luminescens subsp. laumondii]
          Length = 318

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 104/327 (31%), Positives = 160/327 (48%), Gaps = 15/327 (4%)

Query: 170 HVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLK 229
                R   +  Q +  G+P S L+   +   + GTR+ F P    F D   F    L K
Sbjct: 3   ESVFRRDGKVHEQTYHLGVPQSTLKVVGET-EQTGTRVRFWPSMDTFRDNTEFQHDILAK 61

Query: 230 MTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFT 289
             +  ++L+  V       +   E       + F++ GG+K +++   +N+S I  ++F 
Sbjct: 62  RLRELSFLNSGVSIRLIDKRTNIE-------DHFHYEGGIKAFVEFLNKNKSPIHPKVFY 114

Query: 290 GKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
             T++ G     VE A+       +    + N I     GTH  G R A+TR +  Y + 
Sbjct: 115 FSTKEDG---LGVEVALQVNPGFQKNICCFTNNIPPTARGTHLVGFRTAMTRTLNSYMDK 171

Query: 349 --TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
                K  +S   DD     V ++SV + +P+F+ QTK KLVS + +  VE  + +    
Sbjct: 172 EGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVE 231

Query: 407 YLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTE 465
           YL++NP +A  ++  +I+ +  R   RK R    RK A+    LPGKLADC +     +E
Sbjct: 232 YLLENPNDAKTVVSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSE 291

Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPL 492
           L++VEGDSAGGSAKQ  NR NQA+LPL
Sbjct: 292 LYLVEGDSAGGSAKQGSNRKNQAILPL 318


>gi|190569873|dbj|BAG48894.1| DNA gyrase subunit B [Bartonella elizabethae]
          Length = 325

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 114/334 (34%), Positives = 171/334 (51%), Gaps = 13/334 (3%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            I    F+ G+  +PL+       + GT I F P  + F     FD   L +  +  A+L
Sbjct: 1   KIHEISFTHGVADAPLKVVGDCDQESGTEIRFLPSSETFT-MVEFDFETLERRLRELAFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V      ++    +         ++ GGL  +++   +++  +        +EK G 
Sbjct: 60  NSGVHILLVDERHADIQSVE-----LHYEGGLTEFVKYIDQSKKALLDTPIYIASEKDG- 113

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               V+ A+ W +    ++  + N I   +GGTH  G R ALTR I  YAE +    K  
Sbjct: 114 --MGVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLIGFRSALTRQINGYAESSGIAKKEK 171

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +++  DD       ILSV + +P+F+ QTK KLVS + +  VEN + +    +L ++P E
Sbjct: 172 VNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPVVENLVNEGLSIWLEEHPNE 231

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  L+  V+E +  R   RK RE   RK A+    LPGKLADC +     +E+FIVEGDS
Sbjct: 232 AKLLISKVVEAATAREAARKARELTRRKGALDITSLPGKLADCQERDPAKSEIFIVEGDS 291

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
           AGGSAK  R+R NQA+LPLRGKILNV  A  +++
Sbjct: 292 AGGSAKSGRSRQNQAILPLRGKILNVERARFDRM 325


>gi|281331932|emb|CAZ39961.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 277

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 85/286 (29%), Positives = 146/286 (51%), Gaps = 13/286 (4%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS +L V V +    + Q+FS G  ++ L K E     RGT + 
Sbjct: 2   QVSGGLHGVGVSVVNALSQKLLVDVFQNGFHYQQEFSNGAAVTALAKLETTTK-RGTTVR 60

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F P    F D   F    L +  +  ++L+  VK   + ++          +++F++ GG
Sbjct: 61  FWPSTVAFHDNVEFHYDILARRLRELSFLNSGVKIVLADERGD------GRRDDFHYEGG 114

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           ++++++   + ++ +   + +   E  G     V+ A+ W +     +  + N I   +G
Sbjct: 115 IRSFVEHLAQLKTPLHPNVISVTGEHNGI---VVDVALQWTDSYQETMYCFTNNIPQKDG 171

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH +G R ALTR +  Y E     +   I++  DD+    + +LSV + +P F+ QTK 
Sbjct: 172 GTHLAGFRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKE 231

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           KLVS D +  VENA     + +L +NP EA  +   +++ +  R  
Sbjct: 232 KLVSSDVRPAVENAFGARLEEFLQENPNEAKAIAGKIVDAARAREA 277


>gi|62084072|dbj|BAD91443.1| DNA gyrase subunit B [Streptococcus pyogenes]
 gi|110225006|dbj|BAE97492.1| DNA gyrase subunit B [Streptococcus pyogenes]
          Length = 300

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 99/302 (32%), Positives = 154/302 (50%), Gaps = 12/302 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS +L V V +   I  Q+F RG  ++ LE          
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVIGTTDVTG- 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PDP+IF +   FD + L K  Q  A+L+  +K   +  +   E     ++E F 
Sbjct: 60  TTVHFTPDPEIFTETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGME-----QEEHFL 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+ +Y++   + + +I         E +G     VE A+ +       + S+ N I 
Sbjct: 115 YEGGIGSYVEFLNDKKDVIFETPIYTDGELEGI---AVEVAMQYTTSYQETVMSFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G R ALTR I  YA+  +   +   ++  +D+      ++SV    P+F G
Sbjct: 172 THEGGTHEQGFRAALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + +  +       + F  +L++NP  A K++E  I  S+ R+  ++ REV RK
Sbjct: 232 QTKTKLGNSEVVKITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRK 291

Query: 442 TA 443
            +
Sbjct: 292 KS 293


>gi|146271665|emb|CAL25314.1| DNA gyrase subunit B [Pseudomonas vancouverensis]
 gi|146271677|emb|CAL25320.1| DNA gyrase subunit B [Pseudomonas umsongensis]
          Length = 305

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 98/317 (30%), Positives = 157/317 (49%), Gaps = 16/317 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P  P++         G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQEPMKIVGD-SETTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+I F+   + F +   F    L K  +  ++L+  V      ++   E       E F 
Sbjct: 60  TQIHFKASSETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL+ +++    N++ ++         + G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLRAFVEYLNTNKTPVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH  G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNR 440
           QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    R
Sbjct: 229 QTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCS 457
           K A+    LPGKLADC 
Sbjct: 289 KGALDIAGLPGKLADCQ 305


>gi|164456619|dbj|BAF97802.1| gyrase B subunit [Photobacterium indicum]
          Length = 274

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 88/284 (30%), Positives = 152/284 (53%), Gaps = 13/284 (4%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS+++ +T+ R  +I  Q +  G+P  PLE   +  +K GT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSEKVELTINRHGSIHHQIYHHGVPDKPLEAIGET-DKTGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           RI F P    F +   F    L K  +  ++L+  V      ++E        +++ F +
Sbjct: 60  RIRFWPSEDTFTNVV-FHYEILAKRLRELSFLNSGVSIRLIDERE------EGKQDHFMY 112

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG+K +++    N++ I S++F    E++     +VE A+ W +     I  + N I  
Sbjct: 113 EGGIKAFVEHLNRNKTPIHSKVFHFDFERED--GISVEVAMQWNDGFQEGIYCFTNNIPQ 170

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GG+H +G R ALTR +  + +      K   S   DD       ++SV + +P+F+ Q
Sbjct: 171 RDGGSHLAGFRGALTRTLNTFMDKEGYSKKEKTSTSGDDAREGLTAVVSVKVPDPKFSSQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
           TK KLVS + +  VE+A+ +    +L++NP +A  +   +I+ S
Sbjct: 231 TKDKLVSSEVKPAVESAMNEKLSEFLLENPSDAKIVCSKIIDAS 274


>gi|308153090|dbj|BAJ22134.1| DNA gyrase subunit B [Streptomyces rochei]
          Length = 311

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 156/309 (50%), Gaps = 16/309 (5%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS ++ V V      ++Q +  G+P +PL + E      GT +TF
Sbjct: 2   VSGGLHGVGVSVVNALSGKVSVEVKTDGYRWTQDYKMGVPTAPLAQHEATEE-TGTSVTF 60

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI-----------AEKYGIP 258
             DP+IF     +    L +  Q  A+L+  +    + ++E            A++    
Sbjct: 61  WADPEIFET-TEYSFETLSRRFQEMAFLNKGLNIRLTDERESAKATSGADEAGADEKAEV 119

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITS 317
           +   +++ GG+  +++     +  +          +      ++E A+ W     E + S
Sbjct: 120 KSVTYHYEGGIVDFVKYLNSRKGEVVHPTIIDLEAEDKDKSLSLEVAMQWNSGYSEGVYS 179

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIR 375
           + N I T EGGTHE G R ALT  I KYA   +   ++  ++  DD+      I+SV + 
Sbjct: 180 FANIIHTHEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISVKLS 239

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           EP+F GQTKTKL + +A+  V+ A+ +  + +L +NP EA  ++   I+ +  R+  RK 
Sbjct: 240 EPQFEGQTKTKLGNTEAKTFVQKAVYEHLNDWLDRNPNEAADIIRKGIQAATARVAARKA 299

Query: 436 REVNRKTAI 444
           R++ R+  +
Sbjct: 300 RDLTRRKGL 308


>gi|146271673|emb|CAL25318.1| DNA gyrase subunit B [Pseudomonas jessenii]
          Length = 306

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 98/317 (30%), Positives = 157/317 (49%), Gaps = 16/317 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P  P++         G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQEPMKIVGD-SETTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+I F+   + F +   F    L K  +  ++L+  V      ++   E       E F 
Sbjct: 60  TQIHFKASSETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL+ +++    N++ ++         + G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLRAFVEYLNTNKTPVNQVFHFNVQREDGI---GVEIALQWNDSFNENLLCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH  G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNR 440
           QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    R
Sbjct: 229 QTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCS 457
           K A+    LPGKLADC 
Sbjct: 289 KGALDIAGLPGKLADCQ 305


>gi|190569889|dbj|BAG48902.1| DNA gyrase subunit B [Bartonella schoenbuchensis]
          Length = 325

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 118/334 (35%), Positives = 177/334 (52%), Gaps = 13/334 (3%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            I    F+RG+  SPL+       + GT I+F P  +IF     FD   L +  +  A+L
Sbjct: 1   KIHEMSFTRGVADSPLKIVGDCDTESGTEISFLPSSEIFTKT-KFDFETLERRLRELAFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V    +  +         +  + ++ GGL  +++   +++ ++         EK G 
Sbjct: 60  NSGVHILLTDQRHADV-----QSVKLHYDGGLIEFVKYIDQSKKVLIDNPIYITNEKDG- 113

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
              +VE A+ W +    ++  + N I   +GGTH +G R ALTR I  YAE +    K  
Sbjct: 114 --MSVEVALWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRSALTRQINGYAESSGITKKEK 171

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +++  DD       ILSV + +P+F+ QTK KLVS + +  VEN + +    +L ++P E
Sbjct: 172 VNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVENLVNEGLSAWLEEHPNE 231

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  L+  V+E +  R   RK RE   RK A+    LPGKLADC +     +E+FIVEGDS
Sbjct: 232 AKILISKVVEAAAAREAARKARELTRRKGALDITSLPGKLADCQERDPTKSEIFIVEGDS 291

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
           AGGSAK  R+R NQA+LPLRGKILNV  A  +++
Sbjct: 292 AGGSAKSGRSRQNQAILPLRGKILNVERARFDRM 325


>gi|215271011|emb|CAR48184.1| gyrase B subunit [Vibrio campbellii]
          Length = 317

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 112/327 (34%), Positives = 172/327 (52%), Gaps = 14/327 (4%)

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
            +Q +  G P +PL       ++ GT+I F P  + F +   F    L K  +  ++L+ 
Sbjct: 1   HTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETFSNT-EFHYDILAKRLRELSFLNS 58

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            V      ++E        + + F F GG++ +++    N++ I  +IF    E++    
Sbjct: 59  GVSIKLVDEREAD------KSDHFMFEGGIQAFVEHLNTNKTPIIEKIFHFDFERED--G 110

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
            +VE A+ W +     I  + N I   +GGTH +G R ALTR +  + +      K   +
Sbjct: 111 ISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTA 170

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
              DD       ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +L++NP EA 
Sbjct: 171 TSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIENPAEAK 230

Query: 417 KLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            +   +I+ +  R   RK R    RK A+    LPGKLADC +     +EL+IVEGDSAG
Sbjct: 231 MVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAG 290

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASA 502
           GSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 291 GSAKQGRNRKNQAILPLKGKILNVEKA 317


>gi|164456653|dbj|BAF97819.1| gyrase B subunit [Vibrio crassostreae]
          Length = 273

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 86/283 (30%), Positives = 146/283 (51%), Gaps = 13/283 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +S G P +PL       +K GT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGDT-DKTGTE 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F P  + F +   F    L K  +  ++L+  V      ++E        + + F + 
Sbjct: 60  IRFWPSEETFTN-IEFHYDILAKRLRELSFLNSGVSIKLIDERE------EDKMDHFEYE 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG++ +++    N++ I  +IF   +E++     TVE A+ W +     I  + N I   
Sbjct: 113 GGIQAFVEHLNTNKTPIIQKIFHFNSERED--GITVEVAMQWNDGYQENIYCFTNNIPQR 170

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GG H +G R ALTR +  + +      K   +   DD       I+SV + +P+F+ QT
Sbjct: 171 DGGAHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAIVSVKVPDPKFSSQT 230

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
           K KLVS + +  VE+ + +    +L++NP EA  +   +I+ +
Sbjct: 231 KDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKTVCSKIIDAA 273


>gi|209407296|emb|CAP72533.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 303

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 98/315 (31%), Positives = 156/315 (49%), Gaps = 16/315 (5%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS+EL +T+ R+  ++ Q +  G+P +PL    +  +  GT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEELVLTIRREGKVWEQTYRHGVPQAPLAAVGETGD-SGTE 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F+P  + F +   F    L K  +  ++L+  V      ++   E       E F + 
Sbjct: 60  IHFKPSAETFQNIH-FSWDILAKRLRELSFLNSGVGIVLRDERNAKE-------ELFKYE 111

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GGL  ++     N++ ++           G     VE A+ W +     +  + N I   
Sbjct: 112 GGLSAFVAYLNTNKTPVNEVFHFNVQRDDGV---GVEVALQWNDSFNENLLCFTNNIPQR 168

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R ALTR +  Y E      K  +S   DD       I+SV + +P+F+ QT
Sbjct: 169 DGGTHLAGFRSALTRNLNNYIEQEGLAKKHKVSTTGDDAREGLTAIISVKVPDPKFSSQT 228

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKT 442
           K KLVS + +  VE  +   F  +L+++P EA  ++  +I+        R+ +    RK 
Sbjct: 229 KDKLVSSEVKTAVEQEMGKHFADFLLEHPNEAKAVVGKMIDAARAREAARKAREMTRRKG 288

Query: 443 AIRKLRLPGKLADCS 457
           A+    LPGKLADC 
Sbjct: 289 ALDIAGLPGKLADCQ 303


>gi|62084076|dbj|BAD91445.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp.
           dysgalactiae]
 gi|110224962|dbj|BAE97470.1| DNA gyrase subunit B [Streptococcus dysgalactiae]
          Length = 300

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 98/302 (32%), Positives = 153/302 (50%), Gaps = 12/302 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS +L V V +   I  Q+F RG  ++ LE          
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVIGTTDVTG- 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PD +IF +   FD   L K  Q  A+L+  +K   +  +   E     ++E F+
Sbjct: 60  TTVHFTPDSEIFTETTEFDYKVLAKRIQELAFLNRGLKISITDKRSGME-----QEEHFH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+ +Y++   + + +I         E +G     VE A+ +       + S+ N I 
Sbjct: 115 YEGGIGSYVEFLNDKKEVIFDTPIYTDGELEGI---AVEVAMQYTTSYHEVVMSFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G R ALTR I  YA+  +   +   ++  +D+      ++SV    P+F G
Sbjct: 172 THEGGTHEQGFRTALTRVINDYAKKNKILKENDDNLTGEDVREGLTAVISVKHPNPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + +  +       + F  +L++NP  A K++E  I  S+ R+  ++ REV RK
Sbjct: 232 QTKTKLGNSEVVKITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRK 291

Query: 442 TA 443
            +
Sbjct: 292 KS 293


>gi|30793712|gb|AAM52918.1| DNA gyrase subunit beta [Aeromonas schubertii]
          Length = 320

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 117/332 (35%), Positives = 178/332 (53%), Gaps = 16/332 (4%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           RQ  ++ Q +  G P +PL++        GT + F P P IF D   F    L K  +  
Sbjct: 1   RQGHVYEQTYKLGEPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTL-FHYEILAKRLREL 58

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V    S +++  E         F + GG+K +++   ++++ I  ++F    ++
Sbjct: 59  SFLNSGVSIRVSDERDGRE-------VHFCYEGGIKAFVEYLNQSKTPIHQKVFHFSADQ 111

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH +G R ALTR +  Y +      
Sbjct: 112 DGI---GVEVAMQWNDGYQEGVYCFTNNIPQRDGGTHLAGFRAALTRTLNSYMDQEDYSQ 168

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   S   DD+  + V ++SV + +P+F+ QTK KLVS + +  VE A+ D    +L++N
Sbjct: 169 KAKTSASGDDVREALVAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGDKLADFLLEN 228

Query: 412 PIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK R    RK A+    LPGKLADC +     +EL+IVE
Sbjct: 229 PGDAKIVVNKIIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 288

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 289 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 320


>gi|110629862|gb|ABG80447.1| gyrase subunit B [Hydrogenothermus marinus]
          Length = 295

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 51/128 (39%), Positives = 78/128 (60%), Gaps = 7/128 (5%)

Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-------RSQYREEDLRYEKVI 539
           QA+LPL+GKILNV  A  +KI +N++I  ++ A+G             +    LRY K+I
Sbjct: 1   QAILPLKGKILNVEKARIDKILSNEEIRSIINAIGTGIGLQTEEGEEGFDLSKLRYHKII 60

Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599
           +M DADVDG+HI +LLLT FY+    +IE   L++  PPL+R+ +G +  Y  D++  + 
Sbjct: 61  LMADADVDGSHITTLLLTLFYRYFPQIIENGFLYIAQPPLYRLKKGKQVFYLKDDKELEH 120

Query: 600 ILEEFKKH 607
           +L E  K+
Sbjct: 121 VLMEHIKN 128



 Score = 42.5 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 5/47 (10%)

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
           P +  + + +++VY        +IL  F +  K   E+ R+KGLGEM
Sbjct: 254 PAVVSVEKKSETVYG-----LHQILNTFMELAKEGFELQRYKGLGEM 295


>gi|4514493|dbj|BAA75445.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 303

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 96/315 (30%), Positives = 156/315 (49%), Gaps = 16/315 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L +T+ R   I  Q++  G P+ PL+    V    G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSSKLELTIHRAGHIHQQEYKHGDPVYPLKIVGDVA-TTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F     F+   L +  +  ++L+  V+     ++   E         F 
Sbjct: 60  TIVRFWPSTETFSQTI-FNVDILARRLRELSFLNAGVRIVLRDERVALE-------HVFD 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   + ++ ++         + G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLSEFVKYINQGKTHLNEIFHFTTQAENGI---GVEVALQWNDTYQENVRCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  +++  DD       I+SV + +P+F+ 
Sbjct: 169 QKDGGTHLAGFRAALTRGLNSYMENENLLKKEKVAVTGDDAREGLTAIVSVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNR 440
           QTK KLVS + +  VE A+   F  YL++NP  A  +   +I         R+ +    R
Sbjct: 229 QTKEKLVSSEVKPAVEQAMNKAFSEYLLENPQAAKSIAGKIIDAARARDAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLAD 455
           K+A+    LPGKLAD
Sbjct: 289 KSALDIAGLPGKLAD 303


>gi|308197539|gb|ADO17807.1| GyrB [Vibrio caribbenthicus]
          Length = 272

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 88/282 (31%), Positives = 145/282 (51%), Gaps = 13/282 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS+++ +T+ R   I SQ +  G P +PL      +N  GT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKVVLTIHRGGNIHSQTYHHGEPQAPLAVLGDTQN-TGTE 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F P  + F +   F    L K  +  ++L+  V      ++E        + + F F 
Sbjct: 60  IRFWPSAETFSN-TEFHYDILAKRLRELSFLNSGVSIKLIDEREDD------KSDHFMFE 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG++ ++     N++ I  +IF    E++     +VE A+ W +     I  + N I   
Sbjct: 113 GGIQAFVDHLNTNKTPIIDKIFHFDFERED--GISVEVAMQWNDGFQENIYCFTNNIPQR 170

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QT
Sbjct: 171 DGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQT 230

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
           K KLVS + +  VE+A+ +    +LV+NP EA  +   +I+ 
Sbjct: 231 KDKLVSSEVKSAVESAMGEKLAEFLVENPSEAKMVCSKIIDA 272


>gi|148762359|dbj|BAF63881.1| DNA gyrase subunit B [Halobacillus dabanensis]
          Length = 329

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 107/340 (31%), Positives = 171/340 (50%), Gaps = 19/340 (5%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG SVVNALS+ L V + R    + Q+F  G       + +    K GT I
Sbjct: 1   YKVFGGLHGVGASVVNALSEWLEVHICRDGEKYYQRFENGGVPVTSLENKGTTRKTGTTI 60

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+PDP IF     F+   L +  +  A+L    +     ++    K      EE+ +  
Sbjct: 61  RFKPDPTIFSV-IKFNFETLSERLREAAFLLKGFRIILIDERNETVK------EEYQYDD 113

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           GL ++++   E +  +  ++ + +  + G     V++A  + +     I S+ N + T +
Sbjct: 114 GLVSFVEYLNEEKDTLH-QVVSFEGSQAGI---EVDFAFQFNDGFAENILSFVNNVRTKD 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQ 382
           GGTHESG +  +TR    YA  TQ   ++  ++  +D+      ++S  I E   +F GQ
Sbjct: 170 GGTHESGAKTVITRVFNDYARRTQLLKEKDKNLEGNDIREGFTAVISARIPEELLQFEGQ 229

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442
           TK+KL + +A+ +V+  + +   ++L +NP  A+ L++  I+  E R   RK RE  R  
Sbjct: 230 TKSKLGTSEARSSVDGVVAEQLSYFLEENPDVASMLIKKAIKAKEAREAARKAREDARSG 289

Query: 443 AIRK---LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
             RK     L GKL       A   EL++VEGDSAGGSAK
Sbjct: 290 KKRKRKDTLLSGKLTPAQSKNAQKNELYLVEGDSAGGSAK 329


>gi|4514447|dbj|BAA75422.1| DNA gyrase subunit B [Acinetobacter sp.]
 gi|4514453|dbj|BAA75425.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 303

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 95/315 (30%), Positives = 155/315 (49%), Gaps = 16/315 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +LH+ + R   I  Q++  G P  PL    +  +  G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSSKLHLIINRAGQIHEQEYHHGDPQYPLRVIGET-DNTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F     F+   L +  +  ++L+  V+     ++   E         + 
Sbjct: 60  TIVRFWPSAETFSQTI-FNVEILARRLRELSFLNAGVRIVLRDERINLE-------HVYD 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   E ++ ++           G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLSEFVKYINEGKNHLNEIFHFTADADNGI---AVEVALQWNDSYQENVRCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+ +Y E      K  +++  DD       I+SV + +P+F+ 
Sbjct: 169 QKDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNR 440
           QTK KLVS + +  VE A+   F  YL++NP  A  +   +I         R+ +    R
Sbjct: 229 QTKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLAD 455
           K+A+    LPGKLAD
Sbjct: 289 KSALDIAGLPGKLAD 303


>gi|146271669|emb|CAL25316.1| DNA gyrase subunit B [Pseudomonas moorei]
          Length = 305

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 97/317 (30%), Positives = 157/317 (49%), Gaps = 16/317 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS++L +TV R   I+ Q +  G+P  P++         G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEQLVLTVRRSGKIWEQTYVHGVPQEPMKIVGD-SETTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+I F+   + F +   F    L K  +  ++L+  V      ++   E       E F 
Sbjct: 60  TQIHFKASSETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL+ +++    N++ ++         + G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLRAFVEYLNTNKTPVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH  G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNR 440
           QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    R
Sbjct: 229 QTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCS 457
           K A+    LPGKLADC 
Sbjct: 289 KGALDIAGLPGKLADCQ 305


>gi|117675821|emb|CAL69181.1| DNA gyrase subunit B [Mycetocola saprophilus]
          Length = 312

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 96/309 (31%), Positives = 149/309 (48%), Gaps = 14/309 (4%)

Query: 230 MTQSKAYLSGRVKTCWSCDKEIAEKYG---------IPEKEEFYFPGGLKTYLQTKLENR 280
             Q  A+L+  ++     ++    +             +   F++  GL  Y++     +
Sbjct: 1   RFQQMAFLNKGLRIELIDERVDEIEEPVDGEEAAVPTKKHNVFHYERGLVDYVEHLNRAK 60

Query: 281 SLISSEIFTGKTEKKGTHR-GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
                       E++ T R   +E A+ W       + +Y NTI T EGGTHE G R AL
Sbjct: 61  RSELVNDEIISFEQEDTERKIALEIAMQWTTSYSESVHTYANTINTHEGGTHEEGFRAAL 120

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           T  + +YA        +  ++  DD+      ++S+ + EP+F GQTKTKL + +A+  V
Sbjct: 121 TTLVNRYAREKNILKDKDDNLSGDDVREGLTAVISIKLGEPQFEGQTKTKLGNTEAKAFV 180

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLAD 455
           +  + D    +  +NPI A  ++   +  +  RL  RK RE  R+  +     +PGKL D
Sbjct: 181 QKVVGDQLSDWFERNPIIAKAIITKALSAATARLAARKARETARRKGLLEGGGMPGKLKD 240

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C       +E+FIVEGDSAGGSA Q RN   QA+LPLRGKILNV  A  ++   N ++  
Sbjct: 241 CQSKDPSVSEIFIVEGDSAGGSAVQGRNPETQAILPLRGKILNVEKARLDRALGNAEVQA 300

Query: 516 LVQALGCRT 524
           ++ A G   
Sbjct: 301 MITAFGAGI 309


>gi|190569895|dbj|BAG48905.1| DNA gyrase subunit B [Bartonella vinsonii subsp. arupensis]
          Length = 325

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 114/334 (34%), Positives = 170/334 (50%), Gaps = 13/334 (3%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            I    F+ G+  SPL        + GT I F P  + F     FD   L +  +  A+L
Sbjct: 1   KIHEMSFTHGVADSPLSVIGDCDTESGTEIRFLPSSETFT-MVEFDFETLERRLRELAFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +      ++    +         ++ GGL  +++   + +  +        +EK G 
Sbjct: 60  NSGIHILLVDERHADIQSVE-----LHYEGGLIEFVKYIDQTKKALLDNPIYIASEKDG- 113

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
              +V+ A+ W +    ++  + N I   +GGTH  G R ALTR I  YAE +    K  
Sbjct: 114 --MSVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLIGFRSALTRQINGYAESSGIAKKEK 171

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +++  DD       ILSV + +P+F+ QTK KLVS + +  VEN + +    +L ++P E
Sbjct: 172 VNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVENLVNEGLSAWLEEHPNE 231

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  L+  V+E +  R   RK RE   RK A+    LPGKLADC +     +E+FIVEGDS
Sbjct: 232 AKLLISKVVEAATAREAARKARELTRRKGALDITSLPGKLADCQERDPAKSEIFIVEGDS 291

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
           AGGSAK  R+R NQA+LPLRGKILNV  A  +++
Sbjct: 292 AGGSAKSGRSRQNQAILPLRGKILNVERARFDRM 325


>gi|164456657|dbj|BAF97821.1| gyrase B subunit [Vibrio cyclitrophicus]
          Length = 273

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 87/283 (30%), Positives = 146/283 (51%), Gaps = 13/283 (4%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +S G P +PL       +K GT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGDT-DKTGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            I F P  + F +   F    L K  +  ++L+  V      ++E        + + F +
Sbjct: 60  EIRFWPSEETFTN-IEFHYDILAKRLRELSFLNSGVSIKLIDERE------EDKMDHFEY 112

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG++ +++    N++ I  +IF   +E++     TVE A+ W +     I  + N I  
Sbjct: 113 EGGIQAFVEHLNTNKTPIIQKIFHFNSERED--GITVEVAMQWNDGYQENIYCFTNNIPQ 170

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GG H +G R ALTR +  + +      K   S   DD       I+SV + +P+F+ Q
Sbjct: 171 RDGGAHLAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQ 230

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
           TK KLVS + +  VE+ + +    +L++NP EA  +   +I+ 
Sbjct: 231 TKDKLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDA 273


>gi|110084496|gb|ABG49405.1| DNA gyrase subunit beta [Aeromonas eucrenophila]
          Length = 315

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 109/326 (33%), Positives = 172/326 (52%), Gaps = 15/326 (4%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           +T+ R   ++ Q +  G P +PL++     +  GT + F P P IF D   +    L K 
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFSDTL-YHYEILAKR 59

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F  
Sbjct: 60  LRELSFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVEYLNQNKTPIHQKVFHF 112

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +  
Sbjct: 113 STEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKE 169

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +
Sbjct: 170 DYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLAEF 229

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
           L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL
Sbjct: 230 LLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSEL 289

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPL 492
           +IVEGDSAGGSAKQ RNR NQA+LPL
Sbjct: 290 YIVEGDSAGGSAKQGRNRKNQAILPL 315


>gi|18147141|dbj|BAB83051.1| DNA gyrase subunit B [Halomonas cupida]
          Length = 297

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 91/283 (32%), Positives = 146/283 (51%), Gaps = 15/283 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+EL +T+ R   +  Q +  G+P SPL    +   + G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELKLTIWRAGKVHEQIYRHGVPESPLSVVGQT-EQTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           +R+ FRP P+ F +   F    L K  +  ++L+  V      ++   E       E F+
Sbjct: 60  SRVHFRPSPETFAN-IEFHYDILAKRLRELSFLNSGVAIRLLDERSGKE-------ELFH 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGLK ++     N+++++         + G     VE A+ W +     I  Y N I 
Sbjct: 112 YEGGLKAFVDHLNTNKTVLNPVFHFNVEREDGV---AVEVAMQWNDTFAENIFCYTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R +LTR +  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLAGFRASLTRTLNHYIEAEGLLKKTKVNTSGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           QTK KLVS + +  VE  L   F  YLV+ P EA  ++  +++
Sbjct: 229 QTKDKLVSSEVKTAVEQELGRSFSEYLVEKPNEAKAIVNKMLD 271


>gi|146271671|emb|CAL25317.1| DNA gyrase subunit B [Pseudomonas mohnii]
          Length = 305

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 97/317 (30%), Positives = 157/317 (49%), Gaps = 16/317 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS++L +TV R   I+ Q +  G+P  P++         G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEQLVLTVRRSGKIWEQTYVHGVPQEPMKIVGD-SESTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+I F+   + F +   F    L K  +  ++L+  V      ++   E       E F 
Sbjct: 60  TQIHFKASSETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL+ +++    N++ ++         + G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLRAFVEYLNTNKTPVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH  G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNR 440
           QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    R
Sbjct: 229 QTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCS 457
           K A+    LPGKLADC 
Sbjct: 289 KGALDIAGLPGKLADCQ 305


>gi|146271675|emb|CAL25319.1| DNA gyrase subunit B [Pseudomonas koreensis]
          Length = 305

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 98/317 (30%), Positives = 157/317 (49%), Gaps = 16/317 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P +P+          G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGD-SETTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+I F+   + F +   F    L K  +  ++L+  V      ++   E       E F 
Sbjct: 60  TQIHFKASSETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL+ +++    N++ ++         + G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLRAFVEYLNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH  G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNR 440
           QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    R
Sbjct: 229 QTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCS 457
           K A+    LPGKLADC 
Sbjct: 289 KGALDIAGLPGKLADCQ 305


>gi|190569877|dbj|BAG48896.1| DNA gyrase subunit B [Bartonella silvatica]
          Length = 325

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 114/334 (34%), Positives = 172/334 (51%), Gaps = 13/334 (3%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
                 F+ G+   PL+  +    + GT I F P P+ F     FD   L +  +  A+L
Sbjct: 1   KTHEMSFTHGVADFPLKIVDDCGTESGTEIRFLPSPETFT-MVEFDFETLERRLRELAFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V      ++    K         ++ GGL  +++   + +  + ++     +EK G 
Sbjct: 60  NSGVHILLVDERHADIKSVT-----LHYEGGLIEFVKYIDQTKKTLLNQPIYITSEKDG- 113

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
              +V+ A+   +    ++  + N I   +GGTH  G R ALTR I  YAE +    K  
Sbjct: 114 --MSVDVALWRNDSYHEKVLCFTNNIPQRDGGTHLVGFRSALTRQINGYAESSGIAKKEK 171

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +++  DD       ILSV + +P+F+ QTK KLVS + +  VEN + +    +L ++P E
Sbjct: 172 VNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVENLVNEGLSAWLEEHPNE 231

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  L+  V+E +  R   RK RE   RK A+    LPGKLADC +     +E+FIVEGDS
Sbjct: 232 AKLLISKVVEAATAREAARKARELTRRKGALDITSLPGKLADCQERDPARSEIFIVEGDS 291

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
           AGGSAK  R+R NQA+LPLRGKILNV  A  +++
Sbjct: 292 AGGSAKSGRSRQNQAILPLRGKILNVERARFDRM 325


>gi|190148820|gb|ACE63385.1| DNA gyrase B subunit [Streptomonospora salina]
          Length = 349

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 101/353 (28%), Positives = 175/353 (49%), Gaps = 10/353 (2%)

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           +    P++PL + E+  +  GT+ TF  D  IF     +    L +  Q  A+L+  +  
Sbjct: 3   YDTARPVAPLARGEETAD-TGTQTTFWADETIFESTT-YSFETLARRMQEMAFLNRGLSI 60

Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT-HRGTV 302
               ++        P    +++  G+  ++      +    + I   + E +G     ++
Sbjct: 61  TIRDER-PEFVGDTPLVHTYHYENGISDFVAHINTTKEPAHATIIGFEEEGEGISTEISM 119

Query: 303 EWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISD 360
           +W  ++      + ++ NTI T EGGTHE G R ALT  + +YA   +   ++  ++  D
Sbjct: 120 QWNQSFT---SSVHTFANTINTAEGGTHEEGFRTALTSVVNRYAREQKLLREKDDNLTGD 176

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D+      I+SV + +P+F GQTKTKL + +A+  V+    +    +  +NP EA  ++ 
Sbjct: 177 DIREGLTAIISVKLADPQFEGQTKTKLGNTEAKSFVQRVTHEHLRDWFERNPGEAKDVVT 236

Query: 421 WVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
              + +  R+  R+ R+   RKT +    LPGKL+DC       +E++IVEGDSAGGSAK
Sbjct: 237 KASQAARARIAARQARDLTRRKTLLESTSLPGKLSDCQSTEPEKSEVYIVEGDSAGGSAK 296

Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
             R+   QA+LP+RGKILNV  +  ++I  N ++  ++ ALG      +    
Sbjct: 297 GGRDPHYQAILPIRGKILNVEKSRIDRILKNNEVQAIITALGTGIHDDFDASK 349


>gi|116069856|gb|ABI13057.2| DNA gyrase subunit B [Pseudomonas pseudoalcaligenes]
          Length = 304

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 100/316 (31%), Positives = 160/316 (50%), Gaps = 17/316 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           ++TY++SGGLHGVG+SVVNALS+EL +T+ R   ++ Q +  G+P  PL    +  +  G
Sbjct: 1   DNTYKVSGGLHGVGVSVVNALSEELRLTIRRAGQVWEQIYRHGVPQFPLRAVGET-DGTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F+   + F +   F    L K  +  ++L+  V      ++   E       E F 
Sbjct: 60  TEVHFKASAETFTNIH-FSWDILAKRLRELSFLNSGVGILLRDERSGKE-------EMFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
           + GGLK +++    N+++++       + E+ G     VE A+ W +     I  + N I
Sbjct: 112 YEGGLKAFVEYLNTNKTIVNEVFHFNIQREEDGV---GVEVALQWNDSFNENILCFTNNI 168

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  Y E      K  I+   DD       I+SV + +P+F+
Sbjct: 169 PQRDGGTHLAGFRSALTRHLNNYIEQEGLAKKYKIATTGDDAREGLTAIISVKVPDPKFS 228

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVN 439
            QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    
Sbjct: 229 SQTKDKLVSSEVKTAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTR 288

Query: 440 RKTAIRKLRLPGKLAD 455
           RK A+    LPGKLAD
Sbjct: 289 RKGALDIAGLPGKLAD 304


>gi|4514449|dbj|BAA75423.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 303

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 95/315 (30%), Positives = 155/315 (49%), Gaps = 16/315 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +LH+ + R   I  Q++  G P  PL    +  +  G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSSKLHLIINRAGQIHEQEYHHGDPQFPLRVIGET-DNTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F     F+   L +  +  ++L+  V+     ++   E         + 
Sbjct: 60  TIVRFWPSAETFSQTI-FNVEILARRLRELSFLNAGVRIVLRDERINLE-------HVYD 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   E ++ ++           G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLSEFVKYINEGKNHLNEIFHFTADADNGI---AVEVALQWNDSYQENVRCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+ +Y E      K  +++  DD       I+SV + +P+F+ 
Sbjct: 169 QKDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNR 440
           QTK KLVS + +  VE A+   F  YL++NP  A  +   +I         R+ +    R
Sbjct: 229 QTKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLAD 455
           K+A+    LPGKLAD
Sbjct: 289 KSALDIAGLPGKLAD 303


>gi|164456677|dbj|BAF97831.1| gyrase B subunit [Vibrio harveyi]
          Length = 271

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 85/281 (30%), Positives = 147/281 (52%), Gaps = 13/281 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       ++ GT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQ 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F P  + F +   F    L K  +  ++L+  V      ++E        + + F F 
Sbjct: 60  IRFWPSAETFSN-TEFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KSDHFMFE 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG++ +++    N++ I  +IF    E++     +VE A+ W +     I  + N I   
Sbjct: 113 GGIQAFVEHLNTNKTPIIEKIFHFDFERED--GISVEVAMQWNDGFQENIYCFTNNIPQR 170

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QT
Sbjct: 171 DGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQT 230

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           K KLVS + +  VE+A+ +    +L++NP EA  +   +I+
Sbjct: 231 KDKLVSSEVKSAVESAMGEKLSEFLIENPAEAKMVCSKIID 271


>gi|302122550|gb|ADK92943.1| topoisomerase IV subunit B [Geobacillus subterraneus]
          Length = 266

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 85/276 (30%), Positives = 134/276 (48%), Gaps = 17/276 (6%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           F    Y+ SGGLHGVG SVVNALS+ L VT+ R   I+ Q+F  G       +K    NK
Sbjct: 1   FGQGGYKTSGGLHGVGASVVNALSEWLVVTIHRDGFIYRQRFENGGKXVTTLEKIGTTNK 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT I F+PDP IF     FD   L +  +  A+L   +K     ++           E 
Sbjct: 61  TGTIIQFKPDPAIFSTTV-FDYETLSERLRESAFLLKGLKIELVDER-------TGMCEV 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNT 321
           F++  G++ ++    E + ++         E+ G     VE+A  + +   E   S+ N 
Sbjct: 113 FHYENGIEAFVAYLNEEKDVLHPV-AYFAGEQNGI---EVEFAFQFHDGYSENVLSFVNN 168

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP-- 377
           + T +GGTHE+G + A+TR   +YA       ++  ++   D+      I+SV I E   
Sbjct: 169 VRTKDGGTHEAGAKTAMTRVFNEYARXVGLLKEKDKNLEGADIREGLSAIVSVRIPEHLL 228

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
           +F GQTK KL + +A+  V+  + +   ++L +NP 
Sbjct: 229 QFEGQTKGKLGTSEARSAVDAVVSEQLTYFLQENPD 264


>gi|189418941|gb|ACD93716.1| gyrase B subunit [Mangrovibacter plantisponsor]
          Length = 253

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 78/261 (29%), Positives = 131/261 (50%), Gaps = 13/261 (4%)

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS +L + + R   + +Q +  G+P +PL    +     GT + F P  
Sbjct: 1   LHGVGVSVVNALSQKLELVIRRDGKVHNQVYQHGVPTAPLAVTGETEK-TGTMVRFWPSL 59

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           + F +   F+   L K  +  ++L+  V       +         +++ F++ GG+K ++
Sbjct: 60  ETFTNVVEFEYEILAKRLRELSFLNSGVSIRLIDKR------VEGKQDHFHYEGGIKAFV 113

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   +N++ I   +F   TEK G     VE A+ W +     I  + N I   +GGTH +
Sbjct: 114 EYLNKNKTPIHPNVFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLA 170

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R A+TR +  Y +      K  IS   DD     + ++SV + +P+F+ QTK KLVS 
Sbjct: 171 GFRAAMTRTLNTYMDNEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSS 230

Query: 391 DAQRTVENALRDPFDHYLVQN 411
           + +  VE+ + +    YL +N
Sbjct: 231 EVKSAVESQMNERLADYLQEN 251


>gi|190569881|dbj|BAG48898.1| DNA gyrase subunit B [Bartonella koehlerae]
          Length = 325

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 114/334 (34%), Positives = 171/334 (51%), Gaps = 13/334 (3%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            I+   F+ G+  +PL+       + GT I F P  + F     FD   L +  +  A+L
Sbjct: 1   KIYEMSFTHGVANAPLKIVGDCDAESGTEIRFLPSSETFT-MVEFDFETLERRLRELAFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V       +    K         ++ GGL  +++   +++  +        +EK G 
Sbjct: 60  NSGVHILLVDQRHADIKSVE-----LHYEGGLTEFVKYIDQSKKALLDYPIYIASEKDG- 113

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
              +V+ A+ W +    ++  + N I   +GGTH  G R ALTR I  YAE +    K  
Sbjct: 114 --MSVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLVGFRSALTRQINGYAESSGIAKKEK 171

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +++  DD       ILSV + +P+F+ QTK KLVS + +  VEN + +    +L ++P E
Sbjct: 172 VNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVENLVNEGLSAWLEEHPNE 231

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  +   V+E +  R   RK RE   RK A+    LPGKLADC +     +E+FIVEGDS
Sbjct: 232 AKIVTSKVVEAAAAREAARKARELTRRKGALDITSLPGKLADCQERDPAKSEIFIVEGDS 291

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
           AGGSAK  R+R NQA+LPLRGKILNV  A  +++
Sbjct: 292 AGGSAKSGRSRQNQAILPLRGKILNVERARFDRM 325


>gi|210062252|gb|ACJ06175.1| GyrB [Aeromonas media]
          Length = 322

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 111/330 (33%), Positives = 174/330 (52%), Gaps = 16/330 (4%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   +  
Sbjct: 1   LSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFTDTL-YHY 58

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             L K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I 
Sbjct: 59  EILAKRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIH 111

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
            ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR + 
Sbjct: 112 PKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLN 168

Query: 344 KYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ 
Sbjct: 169 SYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMG 228

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNI 460
           +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +  
Sbjct: 229 EKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKD 288

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVL 490
              +EL+IVEGDSAGGSAKQ RNR NQA+L
Sbjct: 289 PALSELYIVEGDSAGGSAKQGRNRKNQAIL 318


>gi|215271007|emb|CAR48182.1| gyrase B subunit [Vibrio campbellii]
 gi|215271019|emb|CAR48188.1| gyrase B subunit [Vibrio campbellii]
 gi|215271021|emb|CAR48189.1| gyrase B subunit [Vibrio campbellii]
          Length = 317

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 112/327 (34%), Positives = 170/327 (51%), Gaps = 14/327 (4%)

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
            +Q +  G P +PL          GT+I F P  + F +   F    L K  +  ++L+ 
Sbjct: 1   HTQTYHHGEPQAPLAVIGDTEK-TGTQIRFWPSAETFSNT-EFHYDILAKRLRELSFLNS 58

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            V      ++E        + + F F GG++ +++    N++ I  +IF    E++    
Sbjct: 59  GVSIKLVDEREAD------KSDHFMFEGGIQAFVEHLNTNKTPIIEKIFHFDFERED--G 110

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
            +VE A+ W +     I  + N I   +GGTH +G R ALTR +  + +      K   +
Sbjct: 111 ISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTA 170

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
              DD       ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +L++NP EA 
Sbjct: 171 TSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIENPTEAK 230

Query: 417 KLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            +   +I+ +  R   RK R    RK A+    LPGKLADC +     +EL+IVEGDSAG
Sbjct: 231 MVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAG 290

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASA 502
           GSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 291 GSAKQGRNRKNQAILPLKGKILNVEKA 317


>gi|215271017|emb|CAR48187.1| gyrase B subunit [Vibrio campbellii]
          Length = 317

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 112/327 (34%), Positives = 171/327 (52%), Gaps = 14/327 (4%)

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
            +Q +  G P +PL       ++ GT+I F P  + F +   F    L K  +  ++L+ 
Sbjct: 1   HTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETFTNI-EFHYDILAKRLRELSFLNS 58

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            V      ++E        + + F F GG++ +++    N++ I  +IF    E++    
Sbjct: 59  GVSIKLVDEREAD------KSDHFMFEGGIQAFVEHLNTNKTPIIEKIFHFDFERED--G 110

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
             VE A+ W +     I  + N I   +GGTH +G R ALTR +  + +      K   +
Sbjct: 111 IAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNTFMDKEGFSKKAKTA 170

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
              DD       ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +L++NP EA 
Sbjct: 171 TSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIENPTEAK 230

Query: 417 KLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            +   +I+ +  R   RK R    RK A+    LPGKLADC +     +EL+IVEGDSAG
Sbjct: 231 MVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAG 290

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASA 502
           GSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 291 GSAKQGRNRKNQAILPLKGKILNVEKA 317


>gi|190569887|dbj|BAG48901.1| DNA gyrase subunit B [Bartonella rattimassiliensis]
          Length = 325

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 114/334 (34%), Positives = 172/334 (51%), Gaps = 13/334 (3%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            I +  F+ G+  +PL+       + GT I F P  + F     FD   L +  +  A+L
Sbjct: 1   KIHAISFTHGVADAPLKVVGDCDQESGTEIRFLPSSETFT-MVEFDFETLERRLRELAFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V      ++    +         ++ GGL  +++   +++  +         EK G 
Sbjct: 60  NSGVHILLVDERHADIQSVE-----LHYEGGLTEFVKYIDQSKKALLDTPIYIANEKDG- 113

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
              +V+ A+ W +    ++  + N I   +GGTH  G R ALTR I  YAE +    K  
Sbjct: 114 --MSVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLIGFRSALTRQINGYAESSGIAKKEK 171

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +++  DD       ILSV + +P+F+ QTK KLVS + +  VEN + +    +L ++P E
Sbjct: 172 VNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPVVENLVNEGLSIWLEEHPNE 231

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  L+  V+E +  R   RK RE   RK A+    LPGKLADC +     +E+FIVEGDS
Sbjct: 232 AKLLISKVVEAATAREAARKARELTRRKGALDITSLPGKLADCQERDPEKSEIFIVEGDS 291

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
           AGGSAK  R+R NQA+LPLRGKILNV  A  +++
Sbjct: 292 AGGSAKSGRSRQNQAILPLRGKILNVERARFDRM 325


>gi|73490227|dbj|BAE19788.1| DNA gyrase B subunit [Pseudomonas fluorescens]
          Length = 304

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 98/316 (31%), Positives = 157/316 (49%), Gaps = 16/316 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P +P+          G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYIHGVPQAPMAIVGD-SETTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+I F+   + F +   F    L K  +  ++L+  V      ++   E       E F 
Sbjct: 60  TQIHFKASSETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL+ +++    N++ ++         + G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLRAFVEYLNTNKTAVNQVFHFNVQREDGI---GVEIALQWNDSFNENLLCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH  G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNR 440
           QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    R
Sbjct: 229 QTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADC 456
           K A+    LPGKLADC
Sbjct: 289 KGALDIAGLPGKLADC 304


>gi|321117348|dbj|BAJ72151.1| gyrase B [Erwinia sp. 'uzenensis']
          Length = 333

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 100/343 (29%), Positives = 170/343 (49%), Gaps = 15/343 (4%)

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
            R+  +  Q +  G+P + L    +  +  GTR+ F P  + F +   F+   L K  + 
Sbjct: 1   RREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRE 59

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            ++L+  V       ++        + + +++ GG+K +++   +N++ I    F   TE
Sbjct: 60  LSFLNSGVSIKLEDKRD-------GKNDHYHYEGGIKAFVEYLNKNKTPIHPNAFYFSTE 112

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350
           K G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +     
Sbjct: 113 KDGI---GVEVALQWNDGFQENIYCFTNXIPQRDGGTHLAGFRAAMTRTLXAYMDKEGXS 169

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++
Sbjct: 170 KKAKVSATGDDAREGLIAVVSVKVPDPKFSXQTKDKLVSXEXKSAVEQQMNELLXEYLLE 229

Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNR-KTAIRKLRLPGKLADCSQNIAHGTELFIV 469
           +P +   ++  +I+ +  R    +  E  R K A+    LPGKLAD  +       +++V
Sbjct: 230 HPGDTKIVVGKIIDAARAREAAPRAPEXTRCKGALDPAGLPGKLADXQEPDPALFXIYLV 289

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           EGD AGG AKQ RNR NQA+ P +GKILNV     +K+  + +
Sbjct: 290 EGDFAGGFAKQGRNRKNQAJPPXKGKILNVEKTRFDKMLASPE 332


>gi|215271009|emb|CAR48183.1| gyrase B subunit [Vibrio campbellii]
 gi|215271013|emb|CAR48185.1| gyrase B subunit [Vibrio campbellii]
 gi|215271015|emb|CAR48186.1| gyrase B subunit [Vibrio campbellii]
          Length = 317

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 111/327 (33%), Positives = 171/327 (52%), Gaps = 14/327 (4%)

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
            +Q +  G P +PL       ++ GT+I F P  + F +   F    L K  +  ++L+ 
Sbjct: 1   HTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETFTNI-EFHYDILAKRLRELSFLNS 58

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            V      ++E        + + F F GG++ +++    N++ I  +IF    E++    
Sbjct: 59  GVSIKLVDEREAD------KSDHFMFEGGIQAFVEHLNTNKTPIIEKIFHFDFERED--G 110

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
             VE A+ W +     I  + N I   +GGTH +G R ALTR +  + +      K   +
Sbjct: 111 IAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNTFMDKEGFSKKAKTA 170

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
              DD       ++SV + +P+F+ QTK KLVS + +  VE+++ +    +L++NP EA 
Sbjct: 171 TSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESSMGEKLSEFLIENPTEAK 230

Query: 417 KLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475
            +   +I+ +  R   RK R    RK A+    LPGKLADC +     +EL+IVEGDSAG
Sbjct: 231 MVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAG 290

Query: 476 GSAKQARNRSNQAVLPLRGKILNVASA 502
           GSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 291 GSAKQGRNRKNQAILPLKGKILNVEKA 317


>gi|215270987|emb|CAR48172.1| gyrase B subunit [Vibrio harveyi]
 gi|215270989|emb|CAR48173.1| gyrase B subunit [Vibrio harveyi]
 gi|215270991|emb|CAR48174.1| gyrase B subunit [Vibrio harveyi]
 gi|215270993|emb|CAR48175.1| gyrase B subunit [Vibrio harveyi]
 gi|215270995|emb|CAR48176.1| gyrase B subunit [Vibrio harveyi]
 gi|215270997|emb|CAR48177.1| gyrase B subunit [Vibrio harveyi]
          Length = 315

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 111/325 (34%), Positives = 170/325 (52%), Gaps = 14/325 (4%)

Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
            +  G P +PL       ++ GT+I F P  + F +   F    L K  +  ++L+  V 
Sbjct: 1   TYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGVS 58

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
                ++E        + + F F GG++ +++    N++ I  +IF    E++     +V
Sbjct: 59  IKLVDEREAD------KSDHFMFEGGIQAFVEHLNTNKTPIIEKIFHFDFERED--GISV 110

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359
           E A+ W +     I  + N I   +GGTH +G R ALTR +  + +      K   +   
Sbjct: 111 EVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSG 170

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD       ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +L++NP EA  + 
Sbjct: 171 DDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIENPAEAKMVC 230

Query: 420 EWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478
             +I+ +  R   RK R    RK A+    LPGKLADC +     +EL+IVEGDSAGGSA
Sbjct: 231 SKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSA 290

Query: 479 KQARNRSNQAVLPLRGKILNVASAG 503
           KQ RNR NQA+LPL+GKILNV  A 
Sbjct: 291 KQGRNRKNQAILPLKGKILNVEKAR 315


>gi|164456651|dbj|BAF97818.1| gyrase B subunit [Vibrio cincinnatiensis]
          Length = 270

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 82/280 (29%), Positives = 144/280 (51%), Gaps = 13/280 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS+++ +T+ R     +Q +  G+P +PL    +  ++ GT + F
Sbjct: 1   VSGGLHGVGVSVVNALSEKVLLTIHRGGKTHTQTYRHGVPQAPLAVVGET-DRTGTTLRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F +   F    L K  +  ++L+  V      ++E        +++ F + GG+
Sbjct: 60  WPSAETFTN-IEFHYEILAKRLRELSFLNSGVSIRLQDEREAD------KQDHFMYEGGI 112

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           + ++     N++ I  ++F    E++      VE A+ W +     I  + N I   +GG
Sbjct: 113 QAFVTHLNRNKTPIHDKVFHFNHERED--GICVEVAMQWNDGFQENIYCFTNNIPQRDGG 170

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  Y E      K   S   DD       ++SV + +P+F+ QTK K
Sbjct: 171 THLAGFRAALTRTLNTYMEKEGYSKKAKTSTSGDDAREGLTAVVSVKVPDPKFSSQTKDK 230

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
           LVS + +  VE+A+ +  + +L ++P EA  +   +I+ +
Sbjct: 231 LVSSEVKAAVESAMGEKLNDFLAEHPSEAKTVCSKIIDAA 270


>gi|89143198|emb|CAJ57496.1| DNA gyrase subunit B [Microbacterium laevaniformans]
          Length = 309

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 97/307 (31%), Positives = 157/307 (51%), Gaps = 14/307 (4%)

Query: 230 MTQSKAYLSGRVKTCWSC---------DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
             Q  A+L+  ++   S          D E  +       ++F++  GL  Y++   + R
Sbjct: 2   RFQQTAFLNKGLRITLSDLRPSSAYLVDGEDGQAVEKQPFDDFHYERGLVDYVEYLNKIR 61

Query: 281 SLISSEIFTGKTEKKGTHR-GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338
                     + E + T R  ++E A+ W       + ++ NTI T EGGTHE G R A+
Sbjct: 62  KAEVVNDEIIEVESEDTERHISLELAMQWTTSYTENVFTFANTINTHEGGTHEEGFRAAM 121

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
           T  I KYA       ++  ++  +D+      ++SV + EP+F GQTKTKL + +A+  V
Sbjct: 122 TTYINKYAREKGLLKEKDDNLTGEDIREGLTAVISVKLSEPQFEGQTKTKLGNTEAKAFV 181

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLAD 455
           +  + D    +L +NP +A +++   I+ +  RL  RK RE  R+ +      +P KL D
Sbjct: 182 QKVVGDQLTDWLDRNPAQAKRVIMKAIDAATARLAARKARETARRKSVFESASMPDKLKD 241

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
           C+      +E+F+VEGDSAGGSA + R+   QA+L LRGK+LNV  A  ++   N +I  
Sbjct: 242 CTSKDPSISEIFLVEGDSAGGSAVRGRDPETQAILSLRGKVLNVEKARLDRALGNNEIQA 301

Query: 516 LVQALGC 522
           ++ A GC
Sbjct: 302 IISAFGC 308


>gi|4514501|dbj|BAA75449.1| DNA gyrase subunit B [Acinetobacter radioresistens]
          Length = 303

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 97/315 (30%), Positives = 157/315 (49%), Gaps = 16/315 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L +TV R   I  Q++  G+P  PL    +   + G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSSKLELTVQRAGQIHEQEYQHGVPQYPLRVVGQT-ERTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T++ F P  + F     F+   L +  +  ++L+  V+     ++   E         F 
Sbjct: 60  TKVRFWPSAETFSQTI-FNVDILARRLRELSFLNAGVRIVLRDERINLE-------HVFD 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   E ++ ++         + G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLSEFVKYINEGKNHLNEIFHFTTQAENGI---GVEVALQWNDSYQENVRCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  +++  DD       I+SV + +P+F+ 
Sbjct: 169 QKDGGTHLAGFRAALTRGLNSYLENENILKKEKVAVTGDDAREGLTAIVSVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNR 440
           QTK KLVS + +  VE A+   F  YL++NP  A  +   +I         R+ +    R
Sbjct: 229 QTKEKLVSSEVKPAVEQAMNKAFSEYLLENPAAAKSIAGKIIDAARARDAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLAD 455
           K+A+    LPGKLAD
Sbjct: 289 KSALDIAGLPGKLAD 303


>gi|164456613|dbj|BAF97799.1| gyrase B subunit [Photobacterium frigidiphilum]
          Length = 272

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 83/281 (29%), Positives = 149/281 (53%), Gaps = 12/281 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS+++ +T+ R+  I  Q +  G+P +PL       +K GTR+ F 
Sbjct: 1   SGGLHGVGVSVVNALSEKVELTINRKGHIHQQSYHHGVPDAPLAVIGDT-DKTGTRLRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F    L K  +  ++L+  V      ++E        +++ F + GG++
Sbjct: 60  PSEETFTNNLEFQYEILAKRLRELSFLNSGVSIRLIDERE------EGKQDHFMYEGGIR 113

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++    N++ I  ++F   +E++     TVE A+ W +     +  + N I   +GGT
Sbjct: 114 AFVEHLNRNKTPIHQKVFHFDSERED--GITVEVAMQWNDGFQEGVYCFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R ALTR +  + +      K   +   DD     + ++SV + +P+F+ QTK KL
Sbjct: 172 HLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLIAVVSVKVPDPKFSSQTKDKL 231

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           VS + +  VE+A+ + F  +L+++P +A  +   +I+ S  
Sbjct: 232 VSSEVKTAVESAMNEKFAEFLLESPADAKIICGKIIDASRA 272


>gi|62084074|dbj|BAD91444.1| DNA gyrase subunit B [Streptococcus canis]
 gi|110224954|dbj|BAE97466.1| DNA gyrase subunit B [Streptococcus canis]
          Length = 300

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 98/302 (32%), Positives = 154/302 (50%), Gaps = 12/302 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS +L V V +   I  Q+F RG  ++ L           
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLAVIGTTDTTG- 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PDP+IF +   FD   L K  Q  A+L+  +K   +  +      G+ ++E F+
Sbjct: 60  TTVHFTPDPEIFAETTEFDYKVLAKRIQELAFLNRGLKISITDKR-----LGMKQEEHFH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+ +Y++   + + +I +       E  G     VE A+ +       + S+ N I 
Sbjct: 115 YEGGIGSYVEFLNDKKDVIFNTPIYTDGELDGV---AVEVAMQYTTSYHETVMSFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G R ALTR I  YA+  +   +   ++  +D+      ++SV    P+F G
Sbjct: 172 THEGGTHEQGFRTALTRVINDYAKKNKILKENDDNLTGEDVREGLTAVISVKHPNPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + +  +       + F  +L++NP  A K++E  I  S+ R+  ++ REV RK
Sbjct: 232 QTKTKLGNSEVVKITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRK 291

Query: 442 TA 443
            +
Sbjct: 292 KS 293


>gi|313112495|ref|ZP_07798166.1| DNA gyrase, B subunit, carboxyl terminus [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310625183|gb|EFQ08467.1| DNA gyrase, B subunit, carboxyl terminus [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 101

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 57/110 (51%), Gaps = 10/110 (9%)

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635
            PPLF++ +G    YA+++     + +E         +++R+KGLGEM   QL ET M+ 
Sbjct: 1   QPPLFKVQKGNTIKYAYNDAEMAVLSQEMP-----GAKVNRYKGLGEMNPEQLWETTMNP 55

Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           + R ++++ I+      +   ++   LMG + + R +FI+  A +   + 
Sbjct: 56  DNRVIVQITIDD----AEKADEAFTILMGDQVEPRRRFIETNAQYAK-LD 100


>gi|11559433|dbj|BAB18783.1| type II DNA topoisomerase [Porphyra onoi]
          Length = 382

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 80/411 (19%), Positives = 133/411 (32%), Gaps = 40/411 (9%)

Query: 113 GRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVT 172
           G GIPV  H K       E+I   L     +D+   ++ GG +G G  + N  S    V 
Sbjct: 1   GAGIPVAMHAK-EGVYVPELIFGHLLTSSNYDDGEKKVVGGRNGYGAKLANIFSTRFVVE 59

Query: 173 VAR--QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA----R 226
            A       + Q F R +              R T      +P +               
Sbjct: 60  TADASSGKTYKQTFKRNMMDRGTPAIRASAKPRDTWTRITFEPDLAKFGMDSLNEDAVAV 119

Query: 227 LLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSE 286
           L       A +   +    +  K                    K Y+   L +       
Sbjct: 120 LQMRVVDMAGVVPGIAVYLNGTKLKI--------------NSFKQYVDLHLADAPDAPRI 165

Query: 287 IFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYA 346
                           E  ++  +     TS+ N+I T +GGTH + +   L   I+++ 
Sbjct: 166 HDATSG--------RWEVVVSLSDGQLTQTSFVNSIATTKGGTHVNHVADQLVSRIQEHI 217

Query: 347 ELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
              +  + + +    +       +   +  P F  QTK  L S  A    +    D    
Sbjct: 218 A--KKHKTLKVKPFQIKSQLSIYVKCLVENPAFDSQTKEMLTSRPASFGSKWVCPDRMAK 275

Query: 407 YLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS-QNIAHGTE 465
                 +  + ++E V+  +E R  +   +    K A          A+ +    +    
Sbjct: 276 -----DLIKSGVVESVLSLAESRQVKELAKTDGGKRARVSGIPKLDDANLAGTRDSAKCT 330

Query: 466 LFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           L + EGDSA   A    +   R    V PLRGK+LNV  A  ++I +N +I
Sbjct: 331 LILTEGDSAKALAISGLSVVGRDYYGVFPLRGKLLNVREATHKQIMDNAEI 381


>gi|40019241|emb|CAE92283.1| DNA gyrase subunit B [Fusobacterium necrophorum]
          Length = 83

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 46/83 (55%), Positives = 60/83 (72%), Gaps = 1/83 (1%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128
           T  + LHHL  EV+DN++DE +AGY N I VS+  +  + V DNGRGIPV+ HPK+  K 
Sbjct: 2   TSARGLHHLVWEVVDNSVDEALAGYCNRITVSILPDNIIQVEDNGRGIPVDIHPKY-GKF 60

Query: 129 TLEIILTTLHAGGKFDNSTYEIS 151
            LEI+LT LHAGGKF+N  Y++S
Sbjct: 61  ALEIVLTVLHAGGKFENDNYKVS 83


>gi|58415320|emb|CAH04918.1| DNA gyrase subunit B [Agromyces ramosus]
          Length = 308

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 100/297 (33%), Positives = 145/297 (48%), Gaps = 5/297 (1%)

Query: 230 MTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFT 289
                   SG V        E       P  + F +  GL  Y++    ++         
Sbjct: 12  RITLTDLRSGHVDIDPDDTAESVTDAAAPRTDTFLYERGLVDYVEYLNRSKKTDLVNDEI 71

Query: 290 GKTEKKGTHR-GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
              E + T R   +E A+ W       + +Y NTI T EGGTHE G R ALT  I +YA 
Sbjct: 72  ISFESEDTDRKIALEVAMQWTTAYTESVHTYANTINTHEGGTHEEGFRAALTTLINRYAR 131

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                 ++  ++  DD+      ++SV + EP+F GQTKTKL + +A+  V+    D   
Sbjct: 132 EKGILKEKDDNLSGDDVREGLTAVISVKLSEPQFEGQTKTKLGNTEAKSFVQKVTGDQLG 191

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGT 464
            +  +NP +A  ++   I+ +  R+  RK RE  R+  +     +PGKL DCS      +
Sbjct: 192 DWFERNPTQARDIIRKAIQAATARIAARKAREATRRKGLLESGGMPGKLKDCSSKDPSIS 251

Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
           E+FIVEGDSAGGSA Q RN   QA+LPLRGKILNV  A  ++   N ++  ++ A G
Sbjct: 252 EIFIVEGDSAGGSAVQGRNPETQAILPLRGKILNVEKARLDRALANNEVQAMITAFG 308


>gi|148470217|gb|ABQ66056.1| gyrase b [uncultured bacterium]
          Length = 314

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 104/333 (31%), Positives = 161/333 (48%), Gaps = 27/333 (8%)

Query: 131 EIILTTLHAGGKFDNSTY-EISGGLHGVGISVVNALSDELHVTV-ARQNTIFSQKFSRGI 188
           E+I+T LHAGGKFD+++Y  +SGGLHGVG+SVVNALS +LH+ +  R   +  Q++  G 
Sbjct: 1   EVIMTVLHAGGKFDDNSYTRVSGGLHGVGVSVVNALSSKLHLIILHRAGQVHEQEYHHGD 60

Query: 189 PLSPLEKKEKVRNKRGTRITFRPD---PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
              PL       +  GT + F P          +  F+   L +  +  ++L+  V+   
Sbjct: 61  TQYPLRVLIGETDSSGTTVRFWPSGLTFSHGECRTIFNVEILARRLRELSFLNAGVRIVL 120

Query: 246 SCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
             ++   E         + + GGL  +++  +       +EIF         +   VE A
Sbjct: 121 RDERINLE-------HVYDYEGGLSEFVKYFINEGKTHLNEIFHFTA--DTENGIGVEVA 171

Query: 306 IAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
           + W           N I   +GGTH +G R ALTRG+ +Y E      K  +++  DD  
Sbjct: 172 LQWN----------NNIPQKDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAR 221

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                I+SV + +P+F+ QTK KLVS + +  VE A+   F  YL++NP  A  +   +I
Sbjct: 222 EGLTAIISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKII 281

Query: 424 -ERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
                    R+ +    RK+A+    LPGKLAD
Sbjct: 282 DAARARDAARKAREMTRRKSALDIAGLPGKLAD 314


>gi|4514485|dbj|BAA75441.1| DNA gyrase subunit B [Acinetobacter haemolyticus]
 gi|4514487|dbj|BAA75442.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 303

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 94/315 (29%), Positives = 154/315 (48%), Gaps = 16/315 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L +T+ R      Q++  G P  PL    +  ++ G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSSKLQLTIHRAGQEHQQEYHHGDPQYPLRVIGET-DRTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F     F+   L +  +  ++L+  V+     ++   E         + 
Sbjct: 60  TIVRFWPSAETFSQTI-FNVDILARRLRELSFLNAGVRIVLRDERVNLENV-------YD 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   E ++ ++           G    +VE A+ W +     +  + N I 
Sbjct: 112 YEGGLSEFVRYINEGKTHLNEIFHFTTDADNGI---SVEVALQWNDSYQENVRCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  + +  DD       I+SV + +P+F+ 
Sbjct: 169 QKDGGTHLAGFRAALTRGLNSYMENENLLKKEKVVVSGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNR 440
           QTK KLVS + +  VE A+   F  YL++NP  A  +   +I         R+ +    R
Sbjct: 229 QTKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLAD 455
           K+A+    LPGKLAD
Sbjct: 289 KSALDIAGLPGKLAD 303


>gi|54125543|gb|AAV30538.1| gyrase B [Serratia sp. MF 416]
          Length = 297

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 89/308 (28%), Positives = 154/308 (50%), Gaps = 15/308 (4%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS++L + + R+  +  Q +  G P +PL+   +  ++ GT + F P  + 
Sbjct: 1   GVGVSVVNALSEKLELVIRREGKVHEQTYKHGEPQAPLKVVGET-DQTGTTLRFWPSFQT 59

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   F+   L K  +  ++L+  V       +   E       + F++ GG++ +++ 
Sbjct: 60  FTNNIEFEYDILAKRLRELSFLNSGVSIRLKDKRNDRE-------DHFHYEGGIRAFVEY 112

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             +N++ I   +F   T K       VE A+ W +     I  + N I   +GGTH +G 
Sbjct: 113 LNKNKTPIHPTVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGF 169

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R A+TR +  Y +      K  IS   DD     + ++SV + +P+F+ QTK KLVS + 
Sbjct: 170 RAAMTRTLNTYMDKEGYSKKSKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEV 229

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPG 451
           +  VE+ + +    YL++NP +A  ++  +I+        R+ +    RK A+    LPG
Sbjct: 230 KTAVESLMNEKLVDYLMENPADAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPG 289

Query: 452 KLADCSQN 459
           KLADC + 
Sbjct: 290 KLADCQER 297


>gi|12060205|dbj|BAB20457.1| b subunit of GyrB typeII topoisomerase [Pseudomonas putida]
 gi|116069850|gb|ABI13054.2| DNA gyrase subunit B [Pseudomonas vancouverensis]
          Length = 303

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 97/315 (30%), Positives = 156/315 (49%), Gaps = 16/315 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P  P++         G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQEPMKIVGD-SETTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+I F+   + F +   F    L K  +  ++L+  V      ++   E       E F 
Sbjct: 60  TQIHFKASSETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL+ +++    N++ ++         + G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLRAFVEYLNTNKTPVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH  G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNR 440
           QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    R
Sbjct: 229 QTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLAD 455
           K A+    LPGKLAD
Sbjct: 289 KGALDIAGLPGKLAD 303


>gi|164456625|dbj|BAF97805.1| gyrase B subunit [Photobacterium phosphoreum]
          Length = 282

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 80/269 (29%), Positives = 146/269 (54%), Gaps = 12/269 (4%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS+++ +T+ R   I+ Q +  G+P +PL +     +K GT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSEKVELTINRNGHIYQQTYCHGVPQAPLAEVGD-SDKTGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           R+ F P  + F +   F    L K  +  ++L+  +      ++E        +++ F +
Sbjct: 60  RLRFWPSEETFTNNLEFHYEILAKRLRELSFLNSGISIRLIDERE------EGKQDHFTY 113

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG++ +++    N++ I  ++F   +E++     TVE A+ W +     +  + N I  
Sbjct: 114 EGGIRAFVEHLNRNKTPIHQKVFHFDSERED--GITVEVAMQWNDGFQEGVYCFTNNIPQ 171

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTR +  + +      K   +   DD     + ++SV + +P+F+ Q
Sbjct: 172 RDGGTHLAGFRGALTRTLNTFMDKEGYSKKAKAATSGDDAREGLIAVVSVKVPDPKFSSQ 231

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           TK KLVS + +  VE+A+ + F  +L+ N
Sbjct: 232 TKDKLVSSEVKTAVESAMNEKFAEFLLVN 260


>gi|12060202|dbj|BAB20456.1| b subunit of GyrB typeII topoisomerase [Pseudomonas putida]
          Length = 303

 Score =  148 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 96/315 (30%), Positives = 156/315 (49%), Gaps = 16/315 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS++L +TV R   I+ Q +  G+P  P++         G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEQLVLTVRRSGKIWEQTYVHGVPQEPMKIVGD-SETTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+I F+   + F +   F    L K  +  ++L+  V      ++   E       E F 
Sbjct: 60  TQIHFKASSETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL+ +++    N++ ++         + G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLRAFVEYLNTNKTPVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH  G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNR 440
           QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    R
Sbjct: 229 QTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLAD 455
           K A+    LPGKLAD
Sbjct: 289 KGALDIAGLPGKLAD 303


>gi|116069848|gb|ABI13053.2| DNA gyrase subunit B [Pseudomonas sp. 1YB2]
          Length = 303

 Score =  148 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 98/315 (31%), Positives = 157/315 (49%), Gaps = 16/315 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +     G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSELLVLTVRRSGKIWEQTYVHGVPQEPMKVVGE-SETTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+I FRP  + F +   F    L K  +  ++L+  V      ++   E       E F 
Sbjct: 60  TQIHFRPSDETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL+ +++    N++ ++         + G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLRAFVEYLNTNKTPVNQVFHFNVQREDGI---GVEIALQWNDSFNENLLCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH  G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNR 440
           QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    R
Sbjct: 229 QTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLAD 455
           K A+    LPGKLAD
Sbjct: 289 KGALDIAGLPGKLAD 303


>gi|4514497|dbj|BAA75447.1| DNA gyrase subunit B [Acinetobacter radioresistens]
          Length = 303

 Score =  148 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 97/315 (30%), Positives = 157/315 (49%), Gaps = 16/315 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +L +TV R   I  Q++  G+P  PL    +   + G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSSKLELTVQRVGQIHEQEYQHGVPQYPLRVVGQT-ERTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T++ F P  + F     F+   L +  +  ++L+  V+     ++   E         F 
Sbjct: 60  TKVRFWPSAETFSQTI-FNVDILARRLRELSFLNAGVRIVLRDERINLE-------HVFD 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   E ++ ++         + G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLSEFVKYINEGKNHLNEIFHFTTQAENGI---GVEVALQWNDSYQENVRCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  +++  DD       I+SV + +P+F+ 
Sbjct: 169 QKDGGTHLAGFRAALTRGLNSYLENENILKKEKVAVTGDDAREGLTAIVSVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNR 440
           QTK KLVS + +  VE A+   F  YL++NP  A  +   +I         R+ +    R
Sbjct: 229 QTKEKLVSSEVKPAVEQAMNKAFSEYLLENPAAAKSIAGKIIDAARARDAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLAD 455
           K+A+    LPGKLAD
Sbjct: 289 KSALDIAGLPGKLAD 303


>gi|116069852|gb|ABI13055.2| DNA gyrase subunit B [Pseudomonas sp. OX1]
          Length = 303

 Score =  148 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 97/315 (30%), Positives = 155/315 (49%), Gaps = 16/315 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P +P+          G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGD-SETTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+I F+   + F +   F    L K  +  ++L+  V      ++   E       E F 
Sbjct: 60  TQIHFKASSETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL+ +++    N++ ++           G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLRAFVEYLNTNKTAVNQVFHFNVQRDDGI---GVEIALQWNDSFNENLLCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH  G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNR 440
           QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    R
Sbjct: 229 QTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLAD 455
           K A+    LPGKLAD
Sbjct: 289 KGALDIAGLPGKLAD 303


>gi|58415314|emb|CAH04915.1| DNA gyrase subunit B [Plantibacter flavus]
          Length = 318

 Score =  148 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 96/317 (30%), Positives = 157/317 (49%), Gaps = 16/317 (5%)

Query: 230 MTQSKAYLSGRVKTCWSCDK-----------EIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
             Q  A+L+  ++   + ++           +         K+ F++  GL+ Y++   +
Sbjct: 2   RFQQMAFLNKGLRIELADERPLRDAIEAEDVDDNSAAHSQRKDVFFYERGLEDYVEYLNK 61

Query: 279 NRSLISSEIFTGKTEKKGTHR-GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            +            E + T R   +E A+ W       + +Y NTI T EGGTHE G R 
Sbjct: 62  AKRAELVHDEIISFESENTERKIALEVAMQWTTAYNESVHTYANTINTHEGGTHEEGFRA 121

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALT  + +YA       ++  ++  DD+      ++SV + EP+F GQTKTKL + +A+ 
Sbjct: 122 ALTTLVNRYAREKGILKEKDDNLSGDDVREGLTAVISVKLSEPQFEGQTKTKLGNTEAKA 181

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKL 453
            V+  + +  + +  +NP +A +++   ++ +  RL  RK RE  R+  +     +PGKL
Sbjct: 182 FVQKVVSEQLNDWFDRNPNQAKEIIRKALQAATARLAARKARETARRKGLLEGGGMPGKL 241

Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
            DC       +E+FIVEGDSAGGSA Q RN   QA+LPLRGKILNV  A  ++   N ++
Sbjct: 242 KDCQSKDPSLSEIFIVEGDSAGGSAVQGRNPETQAILPLRGKILNVEKARLDRALANNEV 301

Query: 514 MDLVQALGCRTRSQYRE 530
             ++ A G      +  
Sbjct: 302 QAMITAFGAGIGEDFNP 318


>gi|54125541|gb|AAV30537.1| gyrase B [Enterobacter cloacae]
          Length = 299

 Score =  148 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 94/306 (30%), Positives = 154/306 (50%), Gaps = 15/306 (4%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS +L + + R+  I  Q ++ G+P +PL       +K GT + F P  + 
Sbjct: 2   GVGVSVVNALSQKLELVIQREGKIHRQLYTHGVPQAPLAVTGDT-DKTGTMVRFWPSLET 60

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++ 
Sbjct: 61  FTNVTEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEY 113

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             +N++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G 
Sbjct: 114 LNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGF 170

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + 
Sbjct: 171 RAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEV 230

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPG 451
           +  VE  + +    YL++NP +A  ++  +I+        R+ +    RK A+    LPG
Sbjct: 231 KSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPG 290

Query: 452 KLADCS 457
           KLADC 
Sbjct: 291 KLADCQ 296


>gi|76786487|gb|ABA54992.1| DNA gyrase B subunit [Pseudomonas fluorescens]
          Length = 271

 Score =  147 bits (371), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 85/283 (30%), Positives = 137/283 (48%), Gaps = 15/283 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P   ++         GT+I F+P
Sbjct: 1   GGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQERMKIVGD-SETTGTQIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SAETFKNIH-FSWDVLAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++         + G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           S + +  VE  +   F  +L++NP EA  ++  +I+ +  R  
Sbjct: 229 SSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREA 271


>gi|111380616|gb|ABH09687.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 191

 Score =  147 bits (371), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 91/190 (47%), Positives = 121/190 (63%), Gaps = 1/190 (0%)

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F GQTKTKL + +  +       + F  +L++NP  A K++E  I  S+ R+  ++ R
Sbjct: 1   PQFEGQTKTKLGNSEVVKITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAR 60

Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E   +K+ +    LPGKLADCS N A   ELFIVEGDSAGGSAK  RNR  QA+LP+RGK
Sbjct: 61  EVTRKKSGLEISNLPGKLADCSSNDASQNELFIVEGDSAGGSAKSGRNREFQAILPIRGK 120

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLL 555
           ILNV  A  +KI  N++I  L  A+G    + +     RY+K++IMTDADVDGAHI +LL
Sbjct: 121 ILNVEKATMDKILANEEIRSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLL 180

Query: 556 LTFFYQEMYD 565
           LT  Y+ M  
Sbjct: 181 LTLIYRFMRP 190


>gi|111380614|gb|ABH09686.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|111380618|gb|ABH09688.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 191

 Score =  147 bits (371), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 91/190 (47%), Positives = 121/190 (63%), Gaps = 1/190 (0%)

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F GQTKTKL + +  +       + F  +L++NP  A K++E  I  S+ R+  ++ R
Sbjct: 1   PQFEGQTKTKLGNSEVVKITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAR 60

Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           E   +K+ +    LPGKLADCS N A   ELFIVEGDSAGGSAK  RNR  QA+LP+RGK
Sbjct: 61  EVTRKKSGLEISNLPGKLADCSSNDASQNELFIVEGDSAGGSAKSGRNREFQAILPIRGK 120

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLL 555
           ILNV  A  +KI  N++I  L  A+G    + +     RY+K++IMTDADVDGAHI +LL
Sbjct: 121 ILNVEKATMDKILANEEIRSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLL 180

Query: 556 LTFFYQEMYD 565
           LT  Y+ M  
Sbjct: 181 LTLIYRFMRP 190


>gi|110084488|gb|ABG49401.1| DNA gyrase subunit beta [Aeromonas enteropelogenes]
          Length = 314

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 110/326 (33%), Positives = 171/326 (52%), Gaps = 16/326 (4%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K 
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTL-FHYEILAKR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F  
Sbjct: 59  LRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHF 111

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +  
Sbjct: 112 TTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKE 168

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +
Sbjct: 169 DYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADF 228

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
           L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL
Sbjct: 229 LLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSEL 288

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPL 492
           +IVEGDSAGGSAKQ RNR NQA+LPL
Sbjct: 289 YIVEGDSAGGSAKQGRNRKNQAILPL 314


>gi|269308276|gb|ACZ34184.1| DNA gyrase subunit B [Aeromonas simiae]
          Length = 308

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 111/320 (34%), Positives = 172/320 (53%), Gaps = 17/320 (5%)

Query: 188 IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247
            P +PL++        GT + F P P IF D   F    L K  +  ++L+  V    S 
Sbjct: 1   EPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTL-FHYETLAKRLRELSFLNSGVSIVLSD 58

Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307
           +++  E         F + GG+K +++   ++++ I  ++F   TE+ G     VE A+ 
Sbjct: 59  ERDGRE-------VNFCYEGGIKAFVEYLNQSKTPIHPKVFHFSTEQDGI---GVEVAMQ 108

Query: 308 WCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE---LTQNKRAISIISDDLM 363
           W +     +  + N I   +GGTH  G R ALTR +  Y +    ++  +  +   DD+ 
Sbjct: 109 WNDGYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKMSAASGDDVR 168

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
              + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++NP +A  ++  +I
Sbjct: 169 EGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKMAEFLLENPSDAKIVVNKII 228

Query: 424 ERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           + +  R   RK R    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ R
Sbjct: 229 DAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGR 288

Query: 483 NRSNQAVLPLRGKILNVASA 502
           NR NQA+LPL+GKILNV  A
Sbjct: 289 NRKNQAILPLKGKILNVEKA 308


>gi|186898207|gb|ACC93991.1| DNA gyrase B subunit [Acinetobacter baylyi]
          Length = 301

 Score =  147 bits (370), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 97/313 (30%), Positives = 151/313 (48%), Gaps = 16/313 (5%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS +L +T+ R   I  Q++  G P  PL+   +     GT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSSKLQLTIHRAGQIHEQEYQHGDPQYPLKVVGETS-TTGTTV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P    F     F+   L +  +  ++L+  VK     ++   E         + + G
Sbjct: 60  RFWPSGDTFSQTI-FNVDILARRLRELSFLNAGVKIVLRDERVNFE-------HIYAYEG 111

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           GL  +++   E ++ ++           G     VE A+ W +     +  + N I   +
Sbjct: 112 GLSEFVKYINEGKNHLNDIFHFTADSDNGI---AVEVALQWNDSYQENVRCFTNNIPQKD 168

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R ALTRG+  Y E      K  +++  DD       I+SV + +P+F+ QTK
Sbjct: 169 GGTHLAGFRAALTRGLNSYLENENILKKEKVNVSGDDAREGLTAIISVKVPDPKFSSQTK 228

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTA 443
            KLVS + +  VE A+   F  YL++NP  A  +   +I         R+ +    RK+A
Sbjct: 229 EKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSA 288

Query: 444 IRKLRLPGKLADC 456
           +    LPGKLADC
Sbjct: 289 LDIAGLPGKLADC 301


>gi|215270999|emb|CAR48178.1| gyrase B subunit [Vibrio harveyi]
 gi|215271003|emb|CAR48180.1| gyrase B subunit [Vibrio harveyi]
 gi|215271005|emb|CAR48181.1| gyrase B subunit [Vibrio harveyi]
          Length = 314

 Score =  147 bits (370), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 111/324 (34%), Positives = 170/324 (52%), Gaps = 14/324 (4%)

Query: 182 QKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241
           Q +  G P +PL       ++ GT+I F P  + F +   F    L K  +  ++L+  V
Sbjct: 1   QTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGV 58

Query: 242 KTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
                 ++E        + + F F GG++ +++    N++ I  +IF    E++     +
Sbjct: 59  SIKLVDEREAD------KSDHFMFEGGIQAFVEHLNTNKTPIIEKIFHFDFERED--GIS 110

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISII 358
           VE A+ W +     I  + N I   +GGTH +G R ALTR +  + +      K   +  
Sbjct: 111 VEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATS 170

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD       ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +L++NP EA  +
Sbjct: 171 GDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIENPAEAKMV 230

Query: 419 LEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
              +I+ +  R   RK R    RK A+    LPGKLADC +     +EL+IVEGDSAGGS
Sbjct: 231 CSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGS 290

Query: 478 AKQARNRSNQAVLPLRGKILNVAS 501
           AKQ RNR NQA+LPL+GKILNV  
Sbjct: 291 AKQGRNRKNQAILPLKGKILNVEK 314


>gi|12060209|dbj|BAB20459.1| b subunit of GyrB typeII topoisomerase [Pseudomonas putida]
          Length = 304

 Score =  147 bits (370), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 98/316 (31%), Positives = 156/316 (49%), Gaps = 16/316 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y++SGGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P  P++         G
Sbjct: 1   DYSYKVSGGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQEPMKIVGD-SETTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+I F+   + F +   F    L K  +  ++L+  V      ++   E       E F 
Sbjct: 60  TQIHFKASSETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL+ +++    N++ ++         + G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLRAFVEYLNTNKTPVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH  G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNR 440
           QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    R
Sbjct: 229 QTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADC 456
           K A+    LPGKLADC
Sbjct: 289 KGALDIAGLPGKLADC 304


>gi|190569897|dbj|BAG48906.1| DNA gyrase subunit B [Bartonella vinsonii subsp. berkhoffii]
          Length = 325

 Score =  147 bits (370), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 116/334 (34%), Positives = 168/334 (50%), Gaps = 13/334 (3%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            I    F+ G+  SPL        + GT I F P P+ F     FD   L +  +  A+L
Sbjct: 1   KIHEMSFTHGVADSPLSIIGDCDTESGTEIRFLPSPQTFT-MIEFDFETLERRLRELAFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +      ++    +         ++ GGL  +++     +  +         EK G 
Sbjct: 60  NSGIHILLVDERHADIRSVK-----LHYEGGLIEFVKYIDPTKKALLDNPIYIANEKDG- 113

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
              +V  A+ W +    ++  + N I   +GGTH  G R ALTR I  YAE +    K  
Sbjct: 114 --MSVNVALWWNDSYHEKVVWFTNNIPQRDGGTHLIGFRSALTRQINGYAESSGIAKKEK 171

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +S+  DD       ILSV + +P+F+ QTK KLVS + +  VEN + +    +L ++P E
Sbjct: 172 VSLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPVVENLVNEGLSAWLEEHPNE 231

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  L+  V+E +  R   RK RE   RK A+    LPGKLADC +     +E+FIVEGDS
Sbjct: 232 AKLLISKVVEAATAREAARKARELTRRKGALDITSLPGKLADCQERDPAKSEIFIVEGDS 291

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
           AGGSAK  R+R NQA+LPLRGKILNV  A  +++
Sbjct: 292 AGGSAKSGRSRQNQAILPLRGKILNVERARFDRM 325


>gi|37778802|gb|AAP31847.1| topoisomerase II [Nectria haematococca mpVI]
          Length = 415

 Score =  147 bits (370), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 93/430 (21%), Positives = 162/430 (37%), Gaps = 32/430 (7%)

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAAR---LLKMTQSKAYLSGR 240
           ++  +      K    +     RITF+PD K FG + G D      L +     A     
Sbjct: 3   WTDNMQKMQKAKITSSKTADFVRITFKPDYKRFGMEDGIDDDLERLLYRRVYDMAGTVRG 62

Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH-R 299
           VK   + +    +           F G    Y ++  + R        T   E       
Sbjct: 63  VKVHLNGEVLKLKD----------FKGYCDLYAKSIAKERMDEEGGTPTCSVEMDKDKGH 112

Query: 300 GTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359
              E   A  +   +  S+ N+I T  GG+H   +   +T        L + K+  ++  
Sbjct: 113 PRWEVGFAVSDGTFQQVSFVNSIATTSGGSHVDYIANQVTAY--LLKALNKKKKGHTLKQ 170

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
             L       ++  I  P F  QTK  + +  +Q   +  L + F   + +     ++ +
Sbjct: 171 SHLKNHIFIFVNCLIDNPAFNSQTKEHMTTKTSQFGSKCQLGEDFLKKVAK-----SEAI 225

Query: 420 EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
           + +++ +E +  +   +    K +        +         H   L + EGDSA G A 
Sbjct: 226 QNIMDFAERKADKMLAKSDGNKRSRVSNAKLVEANLAGTRRGHECTLILTEGDSAKGLAV 285

Query: 480 QAR---NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRY 535
             R   +     V PLRGK+LNV  A  ++I  NQ+I ++ Q LG + +  Y +   LRY
Sbjct: 286 SGRAILDPDRIGVFPLRGKLLNVRDASVDQITKNQEIQNIKQFLGLKHKQVYTDTKSLRY 345

Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK-HLFLISPPLFRITQG---TKS--- 588
             ++IM D D DG+HI  LL+ F   +   L++          P+ ++ QG    K    
Sbjct: 346 GHLMIMADQDHDGSHIKGLLINFLQVQFPSLLKVPDFFREFITPIVKVWQGPNPKKPLRL 405

Query: 589 VYAHDEEHKQ 598
                +   +
Sbjct: 406 KSFFTQLEYE 415


>gi|4514443|dbj|BAA75420.1| DNA gyrase subunit B [Acinetobacter sp.]
 gi|4514445|dbj|BAA75421.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 303

 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 94/315 (29%), Positives = 157/315 (49%), Gaps = 16/315 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +LH+ + R   +  Q++  G P  PL    +  +  G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSSKLHLIINRAGQVHEQEYHHGDPQYPLRVIGET-DSSG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  ++   +  F+   L +  +  ++L+  V+     ++   E         + 
Sbjct: 60  TTVRFWPS-ELTFSQTIFNVEILARRLRELSFLNAGVRIVLRDERINLE-------HVYD 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   E ++ ++         + G     VE A+ W E     +  + N I 
Sbjct: 112 YEGGLSEFVKYINEGKTHLNEIFHFTADTENGI---GVEVALQWNESYQENVRCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+ +Y E      K  +++  DD       I+SV + +P+F+ 
Sbjct: 169 QKDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNR 440
           QTK KLVS + +  VE A+   F  YL++NP  A  +   +I         R+ +    R
Sbjct: 229 QTKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLAD 455
           K+A+    LPGKLAD
Sbjct: 289 KSALDIAGLPGKLAD 303


>gi|66271258|gb|AAY43842.1| DNA gyrase subunit B [Vibrio sp. BR 9807]
          Length = 307

 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 96/317 (30%), Positives = 161/317 (50%), Gaps = 14/317 (4%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       ++ GT+I 
Sbjct: 1   KVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIR 59

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F P  + F +   F    L K  +  ++L+  V      ++E        + + F F GG
Sbjct: 60  FWPSAETFSN-TEFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KSDHFMFEGG 112

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           ++ +++    N++ I  +IF    E++     +VE A+ W +     I  + N I   +G
Sbjct: 113 IQAFVEHLNTNKTPIIEKIFHFDFERED--GISVEVAMHWNDGFQENIYCFTNNIPQRDG 170

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QTK 
Sbjct: 171 GTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKD 230

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAI 444
           KLVS + +  VE+A+ +    +L++NP EA  +   +I+        R+ +    RK A+
Sbjct: 231 KLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGAL 290

Query: 445 RKLRLPGKLADCSQNIA 461
               LPGKLADC +   
Sbjct: 291 NLAGLPGKLADCQEKDP 307


>gi|190569871|dbj|BAG48893.1| DNA gyrase subunit B [Bartonella doshiae]
          Length = 325

 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 114/334 (34%), Positives = 169/334 (50%), Gaps = 13/334 (3%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            I    F+ G+   PL+       + GT I F P  + F     FD   L +  +  A+L
Sbjct: 1   KIHEMSFTHGVADCPLKIVGDCDAESGTEIRFLPSSETFT-MVKFDFETLERRLRELAFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V       +    +         ++ GGL  +++   +++  +  +      EK G 
Sbjct: 60  NSGVHILLVDQRHADIRSIK-----LHYEGGLIEFVKYIDQSKKALLDDPIYITNEKDG- 113

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
              +VE A+ W +    ++  + N I   +GGTH  G R ALTR I  YAE +    K  
Sbjct: 114 --MSVEVALWWNDSYHEKVLCFTNNIPQRDGGTHLVGFRSALTRQINGYAESSGIAKKEK 171

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +++  DD       ILSV + +P+F+ QTK KLVS + +  VEN + +    +L ++P E
Sbjct: 172 VNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVENLVNEGLSVWLEEHPNE 231

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  L   V+E +  R   RK RE   RK A+    LPGKL+DC +     +E+FIVEGDS
Sbjct: 232 AKILTSKVVEAAAAREAARKARELTRRKGALDITSLPGKLSDCQERDPVKSEIFIVEGDS 291

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
           AGGSAK  R+R NQA+LPLRGKILNV  A  +++
Sbjct: 292 AGGSAKSGRSRQNQAILPLRGKILNVERARFDRM 325


>gi|190569899|dbj|BAG48907.1| DNA gyrase subunit B [Bartonella vinsonii subsp. vinsonii]
          Length = 325

 Score =  146 bits (369), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 114/334 (34%), Positives = 169/334 (50%), Gaps = 13/334 (3%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            I    F+ G+  SPL        + GT I F P  + F     FD   L +  +  A+L
Sbjct: 1   KIHEMSFTHGVADSPLSIIGDCDTESGTEIRFLPSSETFT-MVEFDFDTLERRLRELAFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  +      ++    +         ++ GGL  +++   + +  +        +EK G 
Sbjct: 60  NSGIHILLVDERHADIRSVE-----LHYEGGLIEFVKYIDQTKKALLDNPIYIASEKDG- 113

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
              +V+ A+ W +    ++  + N I   +GGTH  G R ALTR I  YAE +    K  
Sbjct: 114 --MSVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLIGFRSALTRQINGYAESSGIAKKEK 171

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +++  DD       ILSV + +P+F+ QTK KLVS + +  VEN + +    +L + P E
Sbjct: 172 VNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVENLVNEGLSAWLEEPPNE 231

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  L+  V+E +  R   RK RE   RK A+    LPGKLADC +     +E+FIVEGDS
Sbjct: 232 AKLLISKVVEAATAREAARKARELTRRKGALDITSLPGKLADCQERDPAKSEIFIVEGDS 291

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
           AGGSAK  R+R NQA+LPLRGKILNV  A  +++
Sbjct: 292 AGGSAKSGRSRQNQAILPLRGKILNVERARFDRM 325


>gi|116069840|gb|ABI13049.2| DNA gyrase subunit B [Pseudomonas sp. 1XB1]
          Length = 302

 Score =  146 bits (369), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 87/283 (30%), Positives = 143/283 (50%), Gaps = 15/283 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS EL +TV R   I+ Q +  G+P  P++   +     G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSKELVLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SETTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+I F+P  + F +   F    L K  +  ++L+  V      ++   E       E F 
Sbjct: 60  TQIHFKPSAETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL+ +++    N++ ++         + G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLRAFVEYLNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH  G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 QTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMID 271


>gi|146271667|emb|CAL25315.1| DNA gyrase subunit B [Pseudomonas reinekei]
          Length = 304

 Score =  146 bits (369), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 85/283 (30%), Positives = 142/283 (50%), Gaps = 15/283 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS++L +TV R   I+ Q +  G+P  P++         G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEQLVLTVRRSGKIWEQTYVHGVPQEPMKIVGD-SETTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+I F+   + F +   F    L K  +  ++L+  V      ++   E       E F 
Sbjct: 60  TQIHFKASSETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL+ +++    N++ ++         + G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLRAFVEYLNTNKTPVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH  G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 QTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMID 271


>gi|190569885|dbj|BAG48900.1| DNA gyrase subunit B [Bartonella quintana]
          Length = 325

 Score =  146 bits (369), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 113/334 (33%), Positives = 168/334 (50%), Gaps = 13/334 (3%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            I    F+ G+  SPL+       + GT I F P  + F     FD   L +  +  A+L
Sbjct: 1   KIHEMSFTHGVADSPLKTVGDCDAENGTEIRFLPSSETFT-MVEFDFETLERRLRELAFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V       +    +         ++ GGL  +++   +++  +        + K G 
Sbjct: 60  NSGVHILLVDQRHADVRSVE-----LHYEGGLTEFVKYIDQSKKALLDCPIYIASVKDGV 114

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
              +V+ A+ W +    ++  + N I   +GGTH  G R ALTR I  YAE +    K  
Sbjct: 115 ---SVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLVGFRSALTRQINGYAESSGIAKKEK 171

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           I++  DD       ILSV + +P+F+ QTK KL S + +  VEN + +    +L ++P E
Sbjct: 172 INLTGDDCREGLTAILSVKVPDPKFSSQTKDKLXSSEVRPIVENLVNEGLSAWLEEHPSE 231

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  +   V+E +  R   RK RE   RK A+    LPGKLADC +     +E+FIVEGDS
Sbjct: 232 AKIVTSKVVEAATAREAARKARELTRRKGALDITSLPGKLADCQERDPAKSEIFIVEGDS 291

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507
           AGGSAK  R+R NQA+LPLRGKILNV  A  +++
Sbjct: 292 AGGSAKSGRSRQNQAILPLRGKILNVERARFDRM 325


>gi|209407298|emb|CAP72534.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 300

 Score =  146 bits (369), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 85/281 (30%), Positives = 141/281 (50%), Gaps = 15/281 (5%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS+EL +T+ R+  ++ Q +  G+P +PL    +  +  GT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEELILTIRREGKVWEQTYRHGVPQAPLAAVGETED-SGTE 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F+P  + F +   F    L K  +  ++L+  V      ++   E       E F + 
Sbjct: 60  IHFKPSAETFQNIH-FSWDILAKRLRELSFLNSGVGIILRDERNAKE-------ELFKYE 111

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GGL  ++     N++ ++           G     VE A+ W +     +  + N I   
Sbjct: 112 GGLSAFVAYLNTNKTPVNEVFHFNVQRDDGV---GVEVALQWNDSFNENLLCFTNNIPQR 168

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QT
Sbjct: 169 DGGTHLAGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQT 228

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           K KLVS + +  VE  +   F  +L+++P EA  ++  +I+
Sbjct: 229 KDKLVSSEVKTAVEQEMGKHFGDFLLEHPNEAKAVVGKMID 269


>gi|89143212|emb|CAJ57503.1| DNA gyrase subunit B [Microbacterium schleiferi]
          Length = 314

 Score =  146 bits (369), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 93/313 (29%), Positives = 154/313 (49%), Gaps = 14/313 (4%)

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDK---------EIAEKYGIPEKEEFYFPGGLKTYLQ 274
              L    Q  A+L+  ++     ++         + +        ++F +  GL  Y++
Sbjct: 1   YDTLRTRFQQMAFLNKGLRITLRDERPESAYVVDDQSSGTAATQPHDDFLYERGLVDYVE 60

Query: 275 TKLENRSLISSEIFTGKTEKKGTHR-GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
              + R          + E + T R  ++E A+ W       + ++ NTI T EGGTHE 
Sbjct: 61  YLNKVRKTEVVNDEIIEVESEDTERHISLELAMQWTTSYTENVFTFANTINTHEGGTHEE 120

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALT  + +YA       ++  ++  +D+      ++SV + EP+F GQTKTKL + 
Sbjct: 121 GFRAALTTLVNRYARAQGMLKEKDDNLTGEDIREGLTAVISVKLSEPQFEGQTKTKLGNT 180

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRL 449
           +A+  V+  + D    +L +NP +A  ++   I+ +  RL  RK RE  R+ +      +
Sbjct: 181 EAKAFVQKVVGDQLTDWLDRNPAQAKNVIRKAIDAATARLAARKARETARRKSVFESAAM 240

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509
           P KL DC       +E+F+VEGDSAGGSA   R+   QA+L LRGKILNV  A  ++   
Sbjct: 241 PDKLKDCVSKDPSISEIFLVEGDSAGGSAVGGRDPHTQAILALRGKILNVERARLDRALG 300

Query: 510 NQQIMDLVQALGC 522
           N+++  ++ A G 
Sbjct: 301 NKEVQAMISAFGT 313


>gi|116069844|gb|ABI13051.2| DNA gyrase subunit B [Pseudomonas sp. JR1]
 gi|116069846|gb|ABI13052.2| DNA gyrase subunit B [Pseudomonas sp. IA1YICDB]
          Length = 303

 Score =  146 bits (369), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 98/315 (31%), Positives = 157/315 (49%), Gaps = 16/315 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P  P++   +     G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYIHGVPKEPMKIVGE-SETTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+I F+P    F +   F    L K  +  ++L+  V      ++   E       E F 
Sbjct: 60  TQIHFKPSDLTFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL+ +++    N++ ++         + G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLRAFVEYLNTNKTPVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH  G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNR 440
           QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    R
Sbjct: 229 QTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLAD 455
           K A+    LPGKLAD
Sbjct: 289 KGALDIAGLPGKLAD 303


>gi|4514489|dbj|BAA75443.1| DNA gyrase subunit B [Acinetobacter junii]
          Length = 303

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 97/315 (30%), Positives = 157/315 (49%), Gaps = 16/315 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +LH+T+ R   I  Q++  G P  PL+   +  +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSKKLHLTIQRAGQIHEQEYCHGDPQYPLKVVGET-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  ++   +  F    L +  +  ++L+  V+     ++   E         + 
Sbjct: 60  TTVRFWPS-ELTFSQTIFSVDILARRLRELSFLNAGVRIVLRDERINLENV-------YD 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   E ++ ++           G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLSEFVKYINEGKTHLNEIFHFTTDADNGI---GVEVALQWNDSYQENVRCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  +++  DD       I+SV + +P+F+ 
Sbjct: 169 QKDGGTHLAGFRAALTRGLNSYMENENLLKKEKVAVSGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNR 440
           QTK KLVS + +  VE A+   F  YL++NP  A  +   +I         RR +    R
Sbjct: 229 QTKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARRAREMTRR 288

Query: 441 KTAIRKLRLPGKLAD 455
           K+A+    LPGKLAD
Sbjct: 289 KSALDIAGLPGKLAD 303


>gi|223674738|gb|ACN13065.1| DNA gyrase subunit B [Pseudomonas sp. 2144.2]
          Length = 270

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 87/282 (30%), Positives = 141/282 (50%), Gaps = 15/282 (5%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P  P++         GT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGD-SESTGTQ 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F+P  + F +   F    L K  +  ++L+  V      ++   E       E F + 
Sbjct: 60  IHFKPSAETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYE 111

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GGL+ +++    N++ ++         + G     VE A+ W +     +  + N I   
Sbjct: 112 GGLRAFVEYLNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQR 168

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH  G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QT
Sbjct: 169 DGGTHLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQT 228

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
           K KLVS + +  VE  +   F  +L++NP EA  ++  +I+ 
Sbjct: 229 KDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDA 270


>gi|76664780|emb|CAJ17828.1| DNA gyrase beta subunit [Candidatus Phytoplasma solani]
          Length = 237

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 98/237 (41%), Positives = 143/237 (60%), Gaps = 5/237 (2%)

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPE 378
           N I T EGGTHE G ++AL R + KYA+     K+  S++S+D++     I+S+  + P+
Sbjct: 1   NNIHTHEGGTHEEGFKLALNRNLSKYAKEFNLLKKDESLLSEDILEGITAIISLKYQNPQ 60

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
           F GQTK KL + + +  +     +  + +LV+NP +A K+++  +  +  RL  ++ RE+
Sbjct: 61  FEGQTKAKLGNTEVRSIISQIFGEFLERFLVENPTDAKKIIDKCLLSANARLSAKRAREI 120

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
            R   +  L    KLADC       +EL+I EGDSAGGSAKQ R+   QA+LPLRGK+LN
Sbjct: 121 ARNKPLDSLGFASKLADCRSKDPQISELYIAEGDSAGGSAKQGRDSRFQAILPLRGKVLN 180

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTR----SQYREEDLRYEKVIIMTDADVDGAHI 551
           V    S KI  N++I  L+QA+G         +   + +RY K+IIMTDADVDGAHI
Sbjct: 181 VEKTQSAKILTNKEIKSLIQAIGIGINIGKSKELNLDKIRYHKIIIMTDADVDGAHI 237


>gi|116069838|gb|ABI13048.2| DNA gyrase subunit B [Pseudomonas sp. DhA-91]
          Length = 300

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 87/283 (30%), Positives = 143/283 (50%), Gaps = 15/283 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P  P+    +     G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMRIVGE-SETTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+I F+P  + F +   F    L K  +  ++L+  V      ++   E       E F 
Sbjct: 60  TQIHFKPSDQTFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL+ +++    N++ ++         + G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLRAFVEYLNTNKTPVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH  G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 QTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMID 271


>gi|116069842|gb|ABI13050.2| DNA gyrase subunit B [Pseudomonas sp. Cam-1]
          Length = 303

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 98/315 (31%), Positives = 157/315 (49%), Gaps = 16/315 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P  P++   +     G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEELILTVRRSGKIWEQTYIHGVPKEPMKIVGE-SETTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+I F+P    F +   F    L K  +  ++L+  V      ++   E       E F 
Sbjct: 60  TQIHFKPSDLTFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL+ +++    N++ ++         + G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLRAFVEYLNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH  G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNR 440
           QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    R
Sbjct: 229 QTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLAD 455
           K A+    LPGKLAD
Sbjct: 289 KGALDIAGLPGKLAD 303


>gi|73490225|dbj|BAE19787.1| DNA gyrase B subunit [Pseudomonas fluorescens]
          Length = 306

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 97/317 (30%), Positives = 156/317 (49%), Gaps = 16/317 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P +P+          G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSELLVLTVRRSGKIWEQTYVHGVPQAPMAIVGD-SETTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+I F+P  + F +   F    L K  +  ++L+  V      ++   E       E F 
Sbjct: 60  TQIHFKPSAETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL+ ++     N++ ++         + G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLRAFVDYLNTNKNPVNQVFHFNVQREDGI---GVEIALQWNDSFNENLLCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH  G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNR 440
           QTK KLVS + +  VE  +   F  +L+++P EA  ++  +I+        R+ +    R
Sbjct: 229 QTKDKLVSSEVKTAVEQEMGKFFSDFLLEHPNEAKLIVGKMIDAARAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLADCS 457
           K A+    LPGKLADC 
Sbjct: 289 KGALDIAGLPGKLADCQ 305


>gi|4514465|dbj|BAA75431.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 304

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 92/315 (29%), Positives = 157/315 (49%), Gaps = 15/315 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS++L + ++R    + Q++  G P+  L +     +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKLLLNISRAGKTYEQEYRHGDPVYKLRETG-TTDKSG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F     F+   L +  +  ++L+  V+     ++   E         + 
Sbjct: 60  TTVRFYPSAETFSQTI-FNVDILARRLRELSFLNAGVRIVLRDERVNLENV-------YD 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   E ++ ++        +       TVE A+ W +     +  + N I 
Sbjct: 112 YEGGLSEFVKYINEGKTHLNDIFHFTAAQADN--GITVEVALQWNDSYQENVRCFTNNIP 169

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y +      K  +++  DD       I+SV + +P+F+ 
Sbjct: 170 QKDGGTHLAGFRAALTRGLNNYMDSENILKKEKVAVSGDDAREGLTAIVSVKVPDPKFSS 229

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNR 440
           QTK KLVS + +  VE A+   F  YL++NP  A  +   +I         R+ +    R
Sbjct: 230 QTKEKLVSSEVKTAVEQAMNKAFSEYLLENPQAAKAIAGKIIDAARARDAARKAREMTRR 289

Query: 441 KTAIRKLRLPGKLAD 455
           K+A+    LPGKLAD
Sbjct: 290 KSALDIAGLPGKLAD 304


>gi|209863335|gb|ACI88767.1| DNA gyrase subunit B [Aeromonas sp. JH82]
          Length = 333

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 114/328 (34%), Positives = 173/328 (52%), Gaps = 15/328 (4%)

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           R +F P P IF D   F    L +  +  ++L+  V      +++  E         F +
Sbjct: 16  RRSFWPSPTIFSDTL-FHYEILAQRLRELSFLNSGVSIRLMDERDGRE-------AHFCY 67

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG+K +++   + ++ I  ++F   TE+ G     V+ A+ W +        + N I  
Sbjct: 68  EGGIKAFVEYLNQKKTPIHPKVFHFTTEQDGV---GVQVAMQWNDAYQEGGYCFTNNIPQ 124

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH  G R ALTR +  Y E      K   +   DD+      ++SV   +P+F+ Q
Sbjct: 125 RDGGTHLVGFRTALTRTLNSYMEKEDYSKKDKSAPSGDDVREGLSAVISVKGPDPKFSSQ 184

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441
           TK KLVS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK RE   RK
Sbjct: 185 TKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRK 244

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  
Sbjct: 245 GALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 304

Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           A  +K+ ++Q++  L+ ALGC       
Sbjct: 305 ARFDKMISSQEVGTLITALGCGIGRDEY 332


>gi|62084080|dbj|BAD91447.1| DNA gyrase subunit B [Streptococcus equi subsp. equi]
 gi|62084082|dbj|BAD91448.1| DNA gyrase subunit B [Streptococcus equi subsp. zooepidemicus]
 gi|110224964|dbj|BAE97471.1| DNA gyrase subunit B [Streptococcus equi]
 gi|110224966|dbj|BAE97472.1| DNA gyrase subunit B [Streptococcus equi]
          Length = 300

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 98/302 (32%), Positives = 150/302 (49%), Gaps = 12/302 (3%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y++SGGLHGVG SVVNALS +L V V +   I  Q+F RG  +  L           
Sbjct: 1   GGGYKVSGGLHGVGSSVVNALSTQLDVRVYKNGHIHYQEFRRGAVVDDLAIIGTTDVTG- 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F PDP+IF +   FD   L K  Q  A+L+  +K   +  +   E+      E F+
Sbjct: 60  TTVHFTPDPEIFTETTEFDYQVLAKRIQELAFLNRGLKISITDKRAGLERE-----EHFH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+ +Y+    + + +I         E +G    TVE A+ +       + S+ N I 
Sbjct: 115 YEGGIGSYVAFLNDKKDVIFDTPIYSDGELEGI---TVEVAMQYTTGYHETVMSFANNIH 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
           T EGGTHE G R ALTR I  YA+  +   +   ++  +D+      ++SV    P+F G
Sbjct: 172 THEGGTHEQGFRTALTRVINDYAKKAKILKENEDNLTGEDVREGLTAVISVKHPNPQFEG 231

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441
           QTKTKL + +  +       +    +L++NP  A K++E  I  S+ R+  ++ REV RK
Sbjct: 232 QTKTKLGNSEVVKITNRLFSEALQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRK 291

Query: 442 TA 443
            +
Sbjct: 292 KS 293


>gi|219687685|dbj|BAH09354.1| gyrase B subunit [Photobacterium aquimaris]
 gi|219687687|dbj|BAH09355.1| gyrase B subunit [Photobacterium aquimaris]
 gi|219687689|dbj|BAH09356.1| gyrase B subunit [Photobacterium aquimaris]
 gi|219687691|dbj|BAH09357.1| gyrase B subunit [Photobacterium aquimaris]
 gi|219687693|dbj|BAH09358.1| gyrase B subunit [Photobacterium aquimaris]
 gi|219687695|dbj|BAH09359.1| gyrase B subunit [Photobacterium aquimaris]
          Length = 268

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 83/277 (29%), Positives = 148/277 (53%), Gaps = 12/277 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS+++ +T+ R+  I  Q +  G+P +PL       +K GTR+ F
Sbjct: 1   VSGGLHGVGVSVVNALSEKVELTINRKGHIHQQTYQHGVPDAPLAVVGDT-DKTGTRLRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F +   F    L K  +  ++L+  V      ++E        +++ F + GG+
Sbjct: 60  WPSEETFTNNIEFHYEILAKRLRELSFLNSGVSIKLIDERE------EGKQDHFMYEGGI 113

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           + +++    N++ I  ++F   +E++     TVE A+ W +     +  + N I   +GG
Sbjct: 114 RAFVEHLNRNKTPIHQKVFHFDSERED--GITVEVAMQWNDGFQEGVYCFTNNIPQRDGG 171

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  + +      K   +   DD     V ++SV + +P+F+ QTK K
Sbjct: 172 THLAGFRGALTRTLNSFMDKEGYSKKAKAATSGDDAREGLVAVVSVKVPDPKFSSQTKDK 231

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
           LVS + +  VE+A+ + F  +L+++P +A  +   +I
Sbjct: 232 LVSSEVKSAVESAMNEKFAEFLLESPADAKIICTKII 268


>gi|61506692|dbj|BAD91108.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506696|dbj|BAD91109.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506699|dbj|BAD91110.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506704|dbj|BAD91111.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506707|dbj|BAD91112.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506710|dbj|BAD91113.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506714|dbj|BAD91114.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506717|dbj|BAD91115.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506720|dbj|BAD91116.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506723|dbj|BAD91117.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506726|dbj|BAD91118.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506730|dbj|BAD91119.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506734|dbj|BAD91120.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506737|dbj|BAD91121.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506740|dbj|BAD91122.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506743|dbj|BAD91123.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506746|dbj|BAD91124.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506749|dbj|BAD91125.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506757|dbj|BAD91128.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506760|dbj|BAD91129.1| DNA gyrase subunit B [Burkholderia glumae]
          Length = 315

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 104/327 (31%), Positives = 162/327 (49%), Gaps = 28/327 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSP 192
            ++Y++SGGLHGVG+S VNALS  L + V R       +F RG+             +SP
Sbjct: 1   QNSYKVSGGLHGVGVSCVNALSSWLRLVVRRNGKKHFMEFHRGVAQNRVLETRDGVEVSP 60

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
           +E   +  N RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   
Sbjct: 61  MEVVGETEN-RGTEVHFMADPTIFGT-VEYHYDILAKRIRELSFLNNGVRIRLTDQRSGK 118

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
           E         F F GG+K +++   + +S++   IF    EK G     VE A+ W +  
Sbjct: 119 EDD-------FAFVGGVKGFVEYINKTKSVLHPTIFHIIGEKDGV---GVEVAMQWNDSY 168

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369
              +  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +
Sbjct: 169 NENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIVDNEIAKKAKVETSGDDMREGLSCV 228

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           LSV + EP+F+ QTK KLVS + +  VE  +    + +L++ P +A  +   ++E +  R
Sbjct: 229 LSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICSKIVEAARAR 288

Query: 430 LRRRKQREVNRKTA-IRKLRLPGKLAD 455
              RK RE+ R+   +  + LPGKLAD
Sbjct: 289 DAARKAREMTRRKGVLDGVGLPGKLAD 315


>gi|4514491|dbj|BAA75444.1| DNA gyrase subunit B [Acinetobacter junii]
          Length = 303

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 97/315 (30%), Positives = 157/315 (49%), Gaps = 16/315 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +LH+T+ R   I  Q++  G P  PL+   +  +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSKKLHLTIQRAGQIHEQEYCHGDPQYPLKVVGET-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  ++   +  F    L +  +  ++L+  V+     ++   E         + 
Sbjct: 60  TTVRFWPS-ELTFSQTIFSVDILARRLRELSFLNAGVRIVLRDERVNLENV-------YD 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   E ++ ++           G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLSEFVKYINEGKTHLNEIFHFTTDADNGI---GVEVALQWNDSYQENVRCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  +++  DD       I+SV + +P+F+ 
Sbjct: 169 QKDGGTHLAGFRAALTRGLNSYMENENLLKKEKVAVSGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNR 440
           QTK KLVS + +  VE A+   F  YL++NP  A  +   +I         RR +    R
Sbjct: 229 QTKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARRAREMTRR 288

Query: 441 KTAIRKLRLPGKLAD 455
           K+A+    LPGKLAD
Sbjct: 289 KSALDIAGLPGKLAD 303


>gi|226201183|gb|ACO37584.1| DNA gyrase subunit B [Aeromonas taiwanensis]
 gi|226201193|gb|ACO37589.1| DNA gyrase subunit B [Aeromonas sanarellii]
          Length = 307

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 113/319 (35%), Positives = 170/319 (53%), Gaps = 16/319 (5%)

Query: 188 IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247
            P +PL++        GT + F P P IF D   F    L K  +  ++L+  V      
Sbjct: 1   EPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEILAKRLRELSFLNSGVSIRLMD 58

Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307
           +++  E         F + GG+K +++   +N++ I  ++F   TE+ G     VE A+ 
Sbjct: 59  ERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGI---GVEVAMQ 108

Query: 308 WCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMI 364
           W +     +  + N I   +GGTH  G R ALTR +  Y +      K   +   DD+  
Sbjct: 109 WNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNNYMDKEDYSKKAKSAASGDDVRE 168

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
             + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++NP +A  ++  +I+
Sbjct: 169 GLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIID 228

Query: 425 RSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483
            +  R   RK RE   RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RN
Sbjct: 229 AARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRN 288

Query: 484 RSNQAVLPLRGKILNVASA 502
           R NQA+LPL+GKILNV  A
Sbjct: 289 RKNQAILPLKGKILNVEKA 307


>gi|215271001|emb|CAR48179.1| gyrase B subunit [Vibrio harveyi]
          Length = 314

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 111/324 (34%), Positives = 169/324 (52%), Gaps = 14/324 (4%)

Query: 182 QKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241
           Q +  G P +PL       ++ GT+I F P  + F +   F    L K  +  ++L+  V
Sbjct: 1   QTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETFSNT-EFHYDILAKRLRELSFLNSGV 58

Query: 242 KTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
                 ++E        + + F F GG++ +++    N++ I  +IF    E +     +
Sbjct: 59  SIKLVDEREAD------KSDHFMFEGGIQAFVEHLNTNKTPIIEKIFHFDFEPED--GIS 110

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISII 358
           VE A+ W +     I  + N I   +GGTH +G R ALTR +  + +      K   +  
Sbjct: 111 VEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATS 170

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD       ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +L++NP EA  +
Sbjct: 171 GDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIENPAEAKMV 230

Query: 419 LEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
              +I+ +  R   RK R    RK A+    LPGKLADC +     +EL+IVEGDSAGGS
Sbjct: 231 CSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGS 290

Query: 478 AKQARNRSNQAVLPLRGKILNVAS 501
           AKQ RNR NQA+LPL+GKILNV  
Sbjct: 291 AKQGRNRKNQAILPLKGKILNVEK 314


>gi|164456643|dbj|BAF97814.1| gyrase B subunit [Vibrio brasiliensis]
          Length = 264

 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 86/274 (31%), Positives = 141/274 (51%), Gaps = 13/274 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K GT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKVTLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DKTGTQ 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F P  + F +   F    L K  +  ++L+  V      ++E        + + F F 
Sbjct: 60  IRFWPSAETFSN-TEFHYDILAKRLRELSFLNSGVSIKLIDERE------EDKSDHFMFE 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG++ ++     N++ I  +IF    E++      VE A+ W +     I  + N I   
Sbjct: 113 GGIQAFVDHLNTNKTPIIEKIFHFDFERED--GIAVEVAMQWNDGFQENIYCFTNNIPQR 170

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QT
Sbjct: 171 DGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQT 230

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417
           K KLVS + +  VE+A+ +    +LV+NP EA  
Sbjct: 231 KDKLVSSEVKSAVESAMGEKLSEFLVENPTEAKM 264


>gi|197295760|gb|ACH58590.1| gyrase subunit B [Methylobacterium nodulans ORS 2060]
          Length = 321

 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 116/325 (35%), Positives = 175/325 (53%), Gaps = 13/325 (4%)

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                FD A L K  +  A+L+  V+   +  +    K      EE  + GG++ +++  
Sbjct: 4   FSMVEFDYATLEKRLRELAFLNSGVRIVLTDARHAEHKR-----EELVYEGGVEAFVRYL 58

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
              ++ + ++    + E+ G     VE A+ W +     +  + N I   +GGTH +G R
Sbjct: 59  DRTKTPLVAKPVVVRAERDGI---GVEVALWWNDSYHETVLPFTNNIPQRDGGTHMAGFR 115

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR I  YAE +    K  +++  DD       I+SV + +P+F+ QTK KLVS + +
Sbjct: 116 AALTRQITGYAESSGIAKKEKVTLSGDDCREGLTAIISVKVPDPKFSSQTKDKLVSSEVR 175

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452
             VEN L +   ++L ++P EA  ++  V E +  R   RK RE   RK A+    LPGK
Sbjct: 176 PVVENVLNEGLSNWLEEHPSEAKTIVGKVAEAAAAREAARKARELTRRKGALDIASLPGK 235

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           LADC +      E+ +VEGDSAGGSAKQ R+R+ QAVLPLRGKILNV  A  +K+ ++Q+
Sbjct: 236 LADCQERDPSKCEILLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERARFDKMLSSQE 295

Query: 513 IMDLVQALGCRT-RSQYREEDLRYE 536
           I  L+ ALG    R ++  + LRY 
Sbjct: 296 IGTLITALGTGIGREEFNPDKLRYH 320


>gi|209407294|emb|CAP72532.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 302

 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 85/283 (30%), Positives = 142/283 (50%), Gaps = 15/283 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           ++ Y++SGGLHGVG+SVVNALS+EL +T+ R+  ++ Q +  G+P +PL    +     G
Sbjct: 1   DNXYKVSGGLHGVGVSVVNALSEELVLTIRREGKVWEQIYRHGVPQAPLTAVGETEG-SG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+I F+P  + F +   F    L K  +  ++L+  V      ++   E       E F 
Sbjct: 60  TQIHFKPSAETFQNIH-FSWDILAKRLRELSFLNSGVGIVLRDERNAKE-------ELFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  ++     N++ ++           G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLSAFVGYLNTNKTPVNEVFHFNVQRDDGV---GVEVALQWNDSFNENLLCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLAGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           QTK KLVS + +  VE  +   F  +L+++P EA  ++  +I+
Sbjct: 229 QTKDKLVSSEVKTAVEQEMGKHFADFLLEHPNEAKAVVGKMID 271


>gi|12060207|dbj|BAB20458.1| b subunit of GyrB typeII topoisomerase [Pseudomonas putida]
          Length = 303

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 97/315 (30%), Positives = 155/315 (49%), Gaps = 16/315 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y++SGGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P  P++         G
Sbjct: 1   DYSYKVSGGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQEPMKIVGD-SETTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+I F+   + F +   F    L K  +  ++L+  V      ++   E       E F 
Sbjct: 60  TQIHFKASSETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL+ +++    N++ ++         + G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLRAFVEYLNTNKTPVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH  G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNR 440
           QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    R
Sbjct: 229 QTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLAD 455
           K A+    LPGKLAD
Sbjct: 289 KGALDIAGLPGKLAD 303


>gi|190148832|gb|ACE63391.1| DNA gyrase B subunit [Pseudonocardia antarctica]
          Length = 374

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 115/378 (30%), Positives = 179/378 (47%), Gaps = 42/378 (11%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS  L V V R   I+ Q +   +P   +E     ++  GT IT+  DPKIF     + 
Sbjct: 1   ALSTALDVEVRRDGQIWRQHYEYAVPGELVEAGTTKKSDTGTTITYWADPKIFETT-SYT 59

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAE------------------------------ 253
              + +  Q + +L+  +      ++   +                              
Sbjct: 60  LETIRRRLQEQTFLNKGLTMVLRDERRPEKPAGVPSSDAVDSDGNPIEAPVPEIDADAEP 119

Query: 254 ----KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
                   P++  F++P GL+ ++    +++  I  +I +   E  G     VE A+ W 
Sbjct: 120 DAEGYVAKPKEYVFHYPNGLEDFVAHLNKSKDPIHRKIVSYTGEGPGHQ---VEVAMQWN 176

Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISA 366
                 + ++ NTI T EGGTHE G R ALT  + KYA   +   ++  ++  DD+    
Sbjct: 177 SGYSESVYTFANTINTHEGGTHEEGFRHALTATVNKYARDKKLIKEKDPALSGDDIREGL 236

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
             I+SV + EP+F GQTKTKL + + +  V+    +    +  +NP EA  ++   +  +
Sbjct: 237 AAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQRVSNEWLADWFERNPTEAKTIVTKAVSSA 296

Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
           + RL  R+ RE V RK+A     LPGKL+DC        EL+IVEGDSAGGSAK  R+  
Sbjct: 297 QARLAARRARELVRRKSAGDIGGLPGKLSDCRSRDPESCELYIVEGDSAGGSAKAGRDSM 356

Query: 486 NQAVLPLRGKILNVASAG 503
           +QA+LP+RGKI+NV  A 
Sbjct: 357 HQAILPIRGKIINVEKAR 374


>gi|76786495|gb|ABA54993.1| DNA gyrase B subunit [Pseudomonas fluorescens]
          Length = 273

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 85/282 (30%), Positives = 138/282 (48%), Gaps = 15/282 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P  P++         GT+I F+P
Sbjct: 1   GGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGD-SESTGTQIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SAETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++         + G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           S + +  V+  +   F  +L++NP EA  ++  +I+ +  R 
Sbjct: 229 SSEVKTAVKQEMGKYFSDFLLENPNEAKLVVGKMIDAARARE 270


>gi|190148856|gb|ACE63403.1| DNA gyrase B subunit [Pseudonocardia petroleophila]
          Length = 336

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 102/340 (30%), Positives = 171/340 (50%), Gaps = 19/340 (5%)

Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI--AEK 254
            +   + G+ IT+  DP IF     ++   + +  Q  A+L+  +      ++     E 
Sbjct: 1   GEETTRTGSSITYWADPDIFETTT-YNLETIRRRLQEMAFLNKGLTMVLRDERNGTANEG 59

Query: 255 YGIPEKE---------EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
              P+ E          + +P GL+ ++    +++  I  ++ +   E +G     +E A
Sbjct: 60  AEEPDAEGYVAKTVENVYCYPNGLEDFVAHLNKSKDPIHKKLVSFSGEAEGH---ALEVA 116

Query: 306 IAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDL 362
           + W       + ++ NTI T EGGTHE G R ALT  + +YA   +   ++  ++  DD+
Sbjct: 117 MQWNSGYTESVYTFANTINTHEGGTHEEGFRSALTSTVNRYARTQKLLKEKDPALSGDDI 176

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW- 421
                 I+SV ++EP+F GQTKTKL + + +  V+    +    +  +NP EA  ++   
Sbjct: 177 REGLAAIVSVKVKEPQFEGQTKTKLGNTEVKSFVQRVSNEWLSDWFERNPAEAKIIVNKS 236

Query: 422 VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
           V         R+ +  V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  
Sbjct: 237 VQSAQARAAARKARELVRRKSATDIGGLPGKLADCRSTDPVKSEVYIVEGDSAGGSAKSG 296

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521
           R+   QA+LP+RGKI+NV  A  +++  N ++  ++ ALG
Sbjct: 297 RDSMFQAILPIRGKIINVEKARIDRVLKNTEVQAIITALG 336


>gi|4514483|dbj|BAA75440.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 303

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 94/315 (29%), Positives = 157/315 (49%), Gaps = 16/315 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +LH+T+ R   +  Q+++ G P  PL+   +  +  G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSKKLHLTIHRAGQVHEQEYAHGDPQYPLKVVGET-DTSG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  ++   +  F    L +  +  ++L+  V+     ++   E         + 
Sbjct: 60  TTVRFWPS-ELTFSQTIFSVDILARRLRELSFLNAGVRIVLRDERVNLE-------HVYD 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   E ++ ++           G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLSEFVKYINEGKTHLNEIFHFTTDADNGI---GVEVALQWNDSYQENVRCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  +++  DD       I+SV + +P+F+ 
Sbjct: 169 QKDGGTHLAGFRAALTRGLNSYMENESLLKKEKVAVTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNR 440
           QTK KLVS + +  VE A+   F  YL++NP  A  +   +I         R+ +    R
Sbjct: 229 QTKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLAD 455
           K+A+    LPGKLAD
Sbjct: 289 KSALDIAGLPGKLAD 303


>gi|4514461|dbj|BAA75429.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 303

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 94/315 (29%), Positives = 157/315 (49%), Gaps = 16/315 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +LH+T+ R   +  Q+++ G P  PL+   +  +  G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSKKLHLTIHRAGQVHEQEYAHGDPQYPLKVVGET-DTSG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  ++   +  F    L +  +  ++L+  V+     ++   E         + 
Sbjct: 60  TTVRFWPS-ELTFSQTIFSVDILARRLRELSFLNAGVRIVLRDERVNLE-------HVYD 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   E ++ ++           G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLSEFVKYINEGKTHLNEIFHFTMDADNGI---GVEVALQWNDSYQENVRCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  +++  DD       I+SV + +P+F+ 
Sbjct: 169 QKDGGTHLAGFRAALTRGLNSYMENESLLKKEKVAVTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNR 440
           QTK KLVS + +  VE A+   F  YL++NP  A  +   +I         R+ +    R
Sbjct: 229 QTKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLAD 455
           K+A+    LPGKLAD
Sbjct: 289 KSALDIAGLPGKLAD 303


>gi|164456709|dbj|BAF97847.1| gyrase B subunit [Vibrio ordalii]
          Length = 293

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 84/278 (30%), Positives = 143/278 (51%), Gaps = 13/278 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G+P +PL    +  +K GT + F
Sbjct: 1   VSGGLHGVGVSVVNALSEKVLLTIYRNGAIHTQTYCHGVPQAPLAVVGET-DKTGTTLRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F +   F    L K  +  ++L+  V      ++E  +K      + F + GG+
Sbjct: 60  WPSAETFTN-IEFHYDILAKRLRELSFLNSGVSIKLFDEREEDKK------DHFRYEGGI 112

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K ++     N++ I  ++F   +E+      TVE A+ W +     I  + N I   +GG
Sbjct: 113 KAFVGHLNRNKTPIHEKVFHFSSERDD--GITVEVAMQWNDGFQENIYCFTNNIPQRDGG 170

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
            H +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QTK K
Sbjct: 171 AHLAGFRGALTRTLNTFMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDK 230

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           LVS + +  VE+A+ +    +L +NP EA  +   +I+
Sbjct: 231 LVSSEVKTAVESAMGEKLAEFLAENPSEAKMVCSKIID 268


>gi|315439564|gb|ADU19854.1| DNA gyrase subunit B [Xanthomonas campestris pv. raphani]
 gi|315439566|gb|ADU19855.1| DNA gyrase subunit B [Xanthomonas campestris pv. raphani]
 gi|315439568|gb|ADU19856.1| DNA gyrase subunit B [Xanthomonas campestris pv. raphani]
          Length = 257

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 83/262 (31%), Positives = 141/262 (53%), Gaps = 14/262 (5%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+++Y++SGGLHGVG+SVVNALS+ L + + R    + Q+++ G P  PL++ E  
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQLEAS 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
              RGT + F+P  +IF D   F    L +  +  ++L+  VK     ++          
Sbjct: 61  TK-RGTTLRFKPAVEIFSD-VEFHYDILARRLRELSFLNSGVKIALIDERG------EGR 112

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
           +++F++ GG++++++   + ++ +   + +   E  G     V+ A+ W +     +  +
Sbjct: 113 RDDFHYEGGIRSFVEHLAQLKTPLHPNVISVTGEHNGI---VVDVALQWTDAYQETMYCF 169

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIRE 376
            N I   +GGTH +G R ALTR +  Y E     +   I    DD+    + +LSV + +
Sbjct: 170 TNNIPQKDGGTHLAGFRGALTRVLSNYIEQNGIAKQAKITLTGDDMREGMIAVLSVKVPD 229

Query: 377 PEFAGQTKTKLVSLDAQRTVEN 398
           P F+ QTK KLVS D +  VEN
Sbjct: 230 PSFSSQTKEKLVSSDVRPAVEN 251


>gi|209420598|gb|ACI47062.1| gyrase B [Mycobacterium tuberculosis]
          Length = 302

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 98/285 (34%), Positives = 151/285 (52%), Gaps = 8/285 (2%)

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PE 314
              +   F++PGG   +++     ++ I S I     +  G     VE A+ W       
Sbjct: 22  HKVKSRTFHYPGGPVDFVKHINRTKNAIHSSIVDFSGKGTGH---EVEIAMQWNAGYSES 78

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSV 372
           + ++ NTI T EGG HE G R ALT  + KYA+  +    +  ++  DD+      ++SV
Sbjct: 79  VHTFANTINTHEGGRHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISV 138

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
            + EP+F GQTKTKL + + +  V+    +   H+   NP +A  ++   +  ++ R+  
Sbjct: 139 KVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQARIAA 198

Query: 433 RKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491
           RK RE V RK+A     LPGKLADC       +EL++VEGDSAGGSAK  R+   QA+LP
Sbjct: 199 RKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILP 258

Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536
           LRGKI+NV  A  +++  N ++  ++ ALG     +  +  LRY 
Sbjct: 259 LRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDE-FDIGLRYH 302


>gi|4514439|dbj|BAA75418.1| DNA gyrase subunit B [Acinetobacter calcoaceticus]
          Length = 303

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 94/315 (29%), Positives = 158/315 (50%), Gaps = 16/315 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +LH+ ++R   +  Q++  G P  PL    +  +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSSKLHLMISRAGQVHEQEYQHGDPQYPLRVIGET-DKSG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  ++   +  F+   L +  +  ++L+  V+     ++   E         + 
Sbjct: 60  TTVRFWPS-ELTFTQTIFNVEILARRLRELSFLNAGVRIVLRDERINLE-------HVYD 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   E ++ ++           G     VE A+ W E     +  + N I 
Sbjct: 112 YEGGLSEFVKYINEGKTHLNEIFHFTADTDNGI---GVEVALQWNESYQENVRCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GG+H +G R ALTRG+ +Y E      K  +++  DD       I+SV + +P+F+ 
Sbjct: 169 QKDGGSHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNR 440
           QTK KLVS + +  VE A+   F  YL++NP  A  +   +I         R+ +    R
Sbjct: 229 QTKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLAD 455
           K+A+    LPGKLAD
Sbjct: 289 KSALDIAGLPGKLAD 303


>gi|270160521|gb|ACZ63226.1| DNA gyrase subunit B [Aeromonas rivuli]
 gi|270210812|gb|ACZ63221.1| DNA gyrase subunit B [Aeromonas rivuli]
          Length = 308

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 111/319 (34%), Positives = 170/319 (53%), Gaps = 15/319 (4%)

Query: 188 IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247
            P +PL++     +  GT + F P   IF D   +    L K  +  ++L+  V      
Sbjct: 1   EPQAPLKQIGDSSSGTGTEVRFWPSSTIFSDTL-YHYDILAKRLRELSFLNSGVSIRLED 59

Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307
           +++  E         F + GG+K +++   +N++ I  ++F   TE+ G     VE A+ 
Sbjct: 60  ERDGRE-------VHFCYEGGIKAFVEYLNQNKTPIHQKVFHFTTEQDGI---GVEVAMQ 109

Query: 308 WCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMI 364
           W +     +  + N I   +GGTH  G R ALTR +  Y +      K   +   DD+  
Sbjct: 110 WNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGDDVRE 169

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
             + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++NP +A  ++  +I+
Sbjct: 170 GLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLSEFLLENPGDAKIVVNKIID 229

Query: 425 RSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483
            +  R   RK RE   RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RN
Sbjct: 230 AARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRN 289

Query: 484 RSNQAVLPLRGKILNVASA 502
           R NQA+LPL+GKILNV  A
Sbjct: 290 RKNQAILPLKGKILNVERA 308


>gi|225629678|ref|ZP_03787659.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225591468|gb|EEH12527.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 288

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 61/130 (46%), Positives = 92/130 (70%), Gaps = 1/130 (0%)

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-E 531
           SAGG+AKQ RNR  QAVL LRGKILNV     ++I ++ +I  L+ A+G    S++ + E
Sbjct: 1   SAGGTAKQGRNRKTQAVLALRGKILNVERVSLDRIFSSAEIGSLITAIGAGIGSEHFDIE 60

Query: 532 DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYA 591
             RY K+IIMTDADVDG+HI +L+LTFF++ M ++IE+ +L++  PPL+++T+  K  Y 
Sbjct: 61  KARYHKIIIMTDADVDGSHIRTLILTFFFRHMREVIEKGYLYIAQPPLYKVTKNAKDTYI 120

Query: 592 HDEEHKQKIL 601
            D+E  ++ +
Sbjct: 121 KDDETFEEYI 130


>gi|1944013|dbj|BAA19518.1| subunit B protein of DNA gyrase [Delftia acidovorans]
          Length = 330

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 103/337 (30%), Positives = 162/337 (48%), Gaps = 29/337 (8%)

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP-------- 192
           GKFD ++Y++SGGLHGVG+S VNALS  L + V R   ++   FSRG   +         
Sbjct: 1   GKFDQNSYKVSGGLHGVGVSCVNALSIWLKLNVRRDGEVYEIDFSRGHVQNRPIEIVDGV 60

Query: 193 ---LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
                +     +KRGT++ F PD +IF     F    L K  +  ++L+  V+     ++
Sbjct: 61  EVSPMRVVGKSDKRGTKVHFLPDTEIFTQNHEFRYEILAKRLRELSFLNNGVRIRLKDER 120

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT-------HRGTV 302
           +  E         F   GG+  ++Q    N+ ++    F     +              V
Sbjct: 121 DGREDD-------FSGAGGVMGFVQFINANKKVLHPTAFHANGTRPAESYGGIPGTEIGV 173

Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359
           E A+ W +    ++  + N I   +GGTH +GLR A+TR I KY E  +   K  + +  
Sbjct: 174 EVAMQWNDSYAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIEQNELAKKAKVEVSG 233

Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419
           DD+      +LSV + EP+F+ QTK KLVS + +  VE+ +      YL + P +A  L 
Sbjct: 234 DDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVAKALTDYLEEKPNDAKILC 293

Query: 420 EWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLAD 455
             +++ +  R   RK RE+ R+   +  + LPGKLAD
Sbjct: 294 SKIVDAARAREAARKAREMTRRKGVLDGMGLPGKLAD 330


>gi|308153084|dbj|BAJ22131.1| DNA gyrase subunit B [Streptomyces goshikiensis]
          Length = 323

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 94/325 (28%), Positives = 161/325 (49%), Gaps = 18/325 (5%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
            Y +SG LHGVG+SVVNALS ++ V V R    ++Q +  G P + L K E+  +  GT 
Sbjct: 1   GYAVSGRLHGVGVSVVNALSTKVAVEVKRDGYRWTQDYKLGAPTAALAKNEET-DAHGTT 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK------------ 254
           +TF  D  IF     +    L +  Q  A+L+  +    + ++E A+             
Sbjct: 60  VTFWADGDIFET-TEYSFETLSRRFQEMAFLNKGLTLTLTDERESAKATVGADDPDADAV 118

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313
                  ++Y+ GG+  +++     +  +          +      +VE A+ W  +   
Sbjct: 119 EPPARTVKYYYEGGIVDFVKYLNSRKGEMIHPTVIDVEAEDKERMLSVEIAMQWNSQYTE 178

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILS 371
            + S+ NTI T EGGTHE G R ALT  + +YA   +   ++  ++  +D+      I+S
Sbjct: 179 GVYSFANTIHTHEGGTHEEGFRAALTGLVNRYARDKKLLREKDDNLAGEDIREGLTAIIS 238

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V + EP+F GQTKTKL + +A+  V+  + +  + +  +NP+EA  ++   I+ +  R+ 
Sbjct: 239 VKLGEPQFEGQTKTKLGNTEAKTFVQKVVHEHLNDWFDRNPVEAADIIRKSIQAATARVA 298

Query: 432 RRKQREVNRKTA-IRKLRLPGKLAD 455
            RK R++ R+   +    LPGKL+D
Sbjct: 299 ARKARDLTRRKGLLESASLPGKLSD 323


>gi|164456731|dbj|BAF97858.1| gyrase B subunit [Vibrio splendidus]
          Length = 273

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 85/281 (30%), Positives = 141/281 (50%), Gaps = 13/281 (4%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +  G P +PL       +K GT I 
Sbjct: 3   QVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVGDT-DKTGTEIR 61

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F P  + F +   F    L K  +  ++L+  V       +E        + + F + GG
Sbjct: 62  FWPSEETFNN-IEFHYDILAKRLRELSFLNSGVSIKLIDKRE------EDKMDHFEYEGG 114

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           ++ +++    N++ I  +IF    E++     TVE A+ W +     I  + N I   +G
Sbjct: 115 IQAFVEHLNTNKTPIIQKIFHFDHERED--GITVEVAMQWNDGYQENIYCFTNNIPQRDG 172

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           G H +G R ALTR +  + +      K   S   DD       I+SV + +P+F+ QTK 
Sbjct: 173 GAHLAGFRGALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQTKD 232

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
           KLVS + +  VE+ + +    +L++NP EA  +   +I+ +
Sbjct: 233 KLVSSEVKSAVESTMGEKLSEFLIENPGEAKIVCSKIIDAA 273


>gi|109729324|gb|ABG46142.1| GyrB [Pseudomonas sp. UC17F4]
          Length = 291

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 86/279 (30%), Positives = 139/279 (49%), Gaps = 15/279 (5%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS++L +TV R   I+ Q +  G+P +P++         GT I 
Sbjct: 8   KVSGGLHGVGVSVVNALSEQLILTVRRSGKIWEQTYVHGVPQAPMKIVGD-SETTGTHIH 66

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F+P  + F +   F    L K  +  ++L+  V      ++   E       E F + GG
Sbjct: 67  FKPSAETFKNIH-FSWDILAKRIRELSFLNSGVGILLKDERSGKE-------EHFKYEGG 118

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           L+ +++    N++ ++         + G     VE A+ W +     +  + N I   +G
Sbjct: 119 LRAFVEYLNTNKTPVNQVFHFSVQREDGV---GVEIALQWNDSFNENLLCFTNNIPQRDG 175

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH  G R ALTR +  Y E      K  +S   DD       I+SV + +P+F+ QTK 
Sbjct: 176 GTHLVGFRSALTRNLNNYIEQEGLAKKNKVSTTGDDAREGLTAIISVKVPDPKFSSQTKD 235

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           KLVS + +  VE  +   F  +L++NP EA  ++  +I+
Sbjct: 236 KLVSSEVKTAVEQEMGKYFSDFLLENPNEAKAVVGKMID 274


>gi|164456725|dbj|BAF97855.1| gyrase B subunit [Vibrio rumoiensis]
          Length = 270

 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 83/279 (29%), Positives = 142/279 (50%), Gaps = 12/279 (4%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS+++ +T+ R   +F Q +  G+P +PL    K     GTRI F P 
Sbjct: 1   GLHGVGVSVVNALSEKVELTIKRHGEVFQQVYKHGVPEAPLAVIGKTEE-TGTRIRFWPS 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            + F +   F    L K  +  ++L+  V    + ++E        + + F F GG++ +
Sbjct: 60  EETFTN-IEFHYDILAKRLRELSFLNSGVSIKLTDERE------EDKSDHFMFEGGIRAF 112

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++    N++ I  +IF     ++     TVE A+ W +     +  + N I   +GGTH 
Sbjct: 113 VEHLNRNKTPIHQKIFYFDHARE-EDGITVEVAMQWNDTFQEGVYCFTNNIPQRDGGTHL 171

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS
Sbjct: 172 AGFRGALTRTLNNFMDKEGYSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVS 231

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
            + +  VE+A+ +    +L++NP EA  +   +I+ +  
Sbjct: 232 SEVKSAVESAMSEKLSEFLIENPNEAKIVCGKIIDAARA 270


>gi|4514463|dbj|BAA75430.1| DNA gyrase subunit B [Acinetobacter sp.]
 gi|4514469|dbj|BAA75433.1| DNA gyrase subunit B [Acinetobacter sp.]
 gi|4514477|dbj|BAA75437.1| DNA gyrase subunit B [Acinetobacter sp.]
 gi|4514479|dbj|BAA75438.1| DNA gyrase subunit B [Acinetobacter sp.]
 gi|4514481|dbj|BAA75439.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 303

 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 95/315 (30%), Positives = 158/315 (50%), Gaps = 16/315 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +LH+T+ R   I  Q+++ G P   L+   +  +  G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSKKLHLTIHRAGQIHEQEYAHGDPQYSLKVVGET-DTSG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  ++   +  F+   L +  +  ++L+  V+     ++   E         + 
Sbjct: 60  TTVRFWPS-ELTFSQTIFNVDILARRLRELSFLNAGVRIVLRDERVNFE-------HVYD 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   E ++ ++           G     VE A+ W E     +  + N I 
Sbjct: 112 YEGGLSEFVKYINEGKTHLNEIFHFTADTDSGI---AVEVALQWNESYQENVRCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+ +Y E      K  +++  DD       I+SV + +P+F+ 
Sbjct: 169 QKDGGTHLAGFRAALTRGLNQYLESENILKKEKVAVTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNR 440
           QTK KLVS + +  VE A+   F  YL++NP  A  +   +I         R+ +    R
Sbjct: 229 QTKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLAD 455
           K+A+    LPGKLAD
Sbjct: 289 KSALDIAGLPGKLAD 303


>gi|4514451|dbj|BAA75424.1| DNA gyrase subunit B [Acinetobacter sp.]
 gi|4514475|dbj|BAA75436.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 303

 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 95/315 (30%), Positives = 158/315 (50%), Gaps = 16/315 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +LH+T+ R   I  Q+++ G P  PL+   +  ++ G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSKKLHLTIQRAGKIHEQEYAHGDPQYPLKVVGET-DQSG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  ++   +  F    L +  +  ++L+  V+     ++   E         + 
Sbjct: 60  TTVRFWPS-ELTFSQTIFSVDILARRLRELSFLNAGVRIVLRDERVNLE-------HVYD 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   E ++ ++           G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLSEFVKYINEGKTHLNDIFHFTTDADNGI---GVEVALQWNDSYQENVRCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+  Y E      K  +++  DD       I+SV + +P+F+ 
Sbjct: 169 QKDGGTHLAGFRAALTRGLNSYMENESLLKKEKVAVTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNR 440
           QTK KLVS + +  VE A+   F  YL++NP  A  +   +I         R+ +    R
Sbjct: 229 QTKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLAD 455
           K+A+    LPGKLAD
Sbjct: 289 KSALDIAGLPGKLAD 303


>gi|4514499|dbj|BAA75448.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 303

 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 96/315 (30%), Positives = 159/315 (50%), Gaps = 16/315 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +LH+T+ R      Q+++ G P  PL+   +  +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSKKLHLTIHRAGQTHEQEYAHGDPQYPLKVVGET-DKSG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  ++   +  F+   L +  +  ++L+  V+     ++   E         + 
Sbjct: 60  TTVRFWPS-ELTFSQTIFNVDILARRLRELSFLNAGVRIVLRDERVNFE-------HVYD 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   E ++ ++           G     VE A+ W E     +  + N I 
Sbjct: 112 YEGGLSEFVKYINEGKTHLNEIFHFTADTDSGI---AVEVALQWNESYQENVRCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+ +Y E      K  +++  DD       I+SV + +P+F+ 
Sbjct: 169 QKDGGTHLAGFRAALTRGLNQYLESENILKKEKVAVTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNR 440
           QTK KLVS + +  VE A+   F  YL++NP  A  +   +I         R+ +    R
Sbjct: 229 QTKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLAD 455
           K+A+    LPGKLAD
Sbjct: 289 KSALDIAGLPGKLAD 303


>gi|164456769|dbj|BAF97877.1| gyrase B subunit [Vibrio ruber]
          Length = 268

 Score =  144 bits (363), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 82/279 (29%), Positives = 141/279 (50%), Gaps = 14/279 (5%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVGISVVNALS+++ +T+ R   I +Q +  G+P +PL          GT 
Sbjct: 1   SYKVSGGLHGVGISVVNALSEKVVLTIHRSGHIHTQTYHHGVPQAPLAVVGDTEK-SGTM 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F P  + F +   F    L K  +  ++L+  V    + +++        + + F + 
Sbjct: 60  VRFWPSSETFTN-IEFHYEILAKRLRELSFLNSGVSIKLNDERDS-------KHDHFMYE 111

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG++ ++     N++ I   +F    E++     TVE A+ W +     I  + N I   
Sbjct: 112 GGIRAFVSHLNRNKTPIHDRVFHFNQERED--GITVEVAMQWNDSFQESIFCFTNNIPQR 169

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QT
Sbjct: 170 DGGTHMAGFRAALTRTLNSFMDKEGFSKKEKTATSGDDAREGLTAVISVKVPDPKFSSQT 229

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
           K KLVS + +  VE A+ +    +L++NP EA  +   +
Sbjct: 230 KDKLVSSEVKSAVETAMGEKLSEFLIENPNEAKIVCSKI 268


>gi|40019249|emb|CAE92288.1| DNA gyrase subunit B [Haemophilus parainfluenzae]
          Length = 84

 Score =  144 bits (363), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 41/85 (48%), Positives = 61/85 (71%), Gaps = 2/85 (2%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DNA+DE +AGY + I V++  +  ++V D+GRGIPV+ HP+   
Sbjct: 1   DTDDGTGLHHMVFEVVDNAIDEALAGYCSDIIVTIHDDNSVSVQDDGRGIPVDIHPE-EG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEIS 151
            S  E I+T LHAGGKFD+++Y++S
Sbjct: 60  VSAAEAIMTVLHAGGKFDDNSYKVS 84


>gi|223674726|gb|ACN13059.1| DNA gyrase subunit B [bacterium 2134.2]
          Length = 222

 Score =  144 bits (363), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 115/231 (49%), Gaps = 14/231 (6%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+++Y++SGGLHGVG+SVVNALS++L + + R+  +  Q +S G P   L+   + 
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYSHGEPQGALKVVGET 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            ++ GT + F P  + F ++  F    L K  +  ++L+  V       +   E      
Sbjct: 61  -DQTGTMVRFWPSYQTFTNQTEFQYEILAKRLRELSFLNSGVSIRLKDKRTDKE------ 113

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
            + F++ GG+K +++   +N++ I   +F   T K       VE A+ W +     I  +
Sbjct: 114 -DHFHYEGGIKAFVEYLNKNKTPIHPTVFYFSTVKDDI---GVEVALQWNDGFQENIYCF 169

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
            N I   +GGTH +G R A+TR +  Y +      K  +S   DD      
Sbjct: 170 TNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLT 220


>gi|1944017|dbj|BAA19520.1| subunit B protein of DNA gyrase [Comamonas testosteroni]
          Length = 330

 Score =  144 bits (363), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 145/305 (47%), Gaps = 28/305 (9%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP------- 192
           GGKFD ++Y++SGGLHGVG+S VNALS  L +TV+R        FSRG   +        
Sbjct: 1   GGKFDQNSYKVSGGLHGVGVSCVNALSIWLKLTVSRDGVRHEIDFSRGFVQNRLIEVVDG 60

Query: 193 ----LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
                 +     +KRGT++ F PD +IF +   F    L K  +  ++L+  V+     +
Sbjct: 61  TEVSPMRVVGPSDKRGTKVHFLPDQEIFKENFEFRYEILAKRLRELSFLNNGVRIRLKDE 120

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT-------HRGT 301
           ++  E         F   GG+K +++     + ++    F  +  +              
Sbjct: 121 RDGKEDD-------FSGAGGVKGFVEFINGTKKVLHPTTFYAEGTRPAETYGGIPGTEIG 173

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISII 358
           VE A+ W +    ++  + N I   +GGTH +GLR A+TR I KY    +   K  + + 
Sbjct: 174 VEVAMQWNDSYAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIADNELAKKAKVEVT 233

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+      +LSV + EP+F+ QTK KLVS + +  VE+ +      +L + P +A  L
Sbjct: 234 GDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVGKLLAEFLEEKPNDAKIL 293

Query: 419 LEWVI 423
              ++
Sbjct: 294 CNKIV 298


>gi|158905087|gb|ABW82366.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. alfalfae]
 gi|158905089|gb|ABW82367.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. alfalfae]
 gi|158905091|gb|ABW82368.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. allii]
 gi|158905093|gb|ABW82369.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. allii]
 gi|158905095|gb|ABW82370.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. allii]
 gi|158905097|gb|ABW82371.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. allii]
 gi|158905099|gb|ABW82372.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. axonopodis]
 gi|158905101|gb|ABW82373.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. axonopodis]
 gi|158905103|gb|ABW82374.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. begoniae]
 gi|158905105|gb|ABW82375.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. begoniae]
 gi|158905107|gb|ABW82376.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. begoniae]
 gi|158905109|gb|ABW82377.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. begoniae]
 gi|158905111|gb|ABW82378.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. begoniae]
 gi|158905113|gb|ABW82379.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. cassavae]
 gi|158905115|gb|ABW82380.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. cassiae]
 gi|158905117|gb|ABW82381.1| DNA gyrase subunit beta [Xanthomonas alfalfae subsp. citrumelonis]
 gi|158905119|gb|ABW82382.1| DNA gyrase subunit beta [Xanthomonas alfalfae subsp. citrumelonis]
 gi|158905121|gb|ABW82383.1| DNA gyrase subunit beta [Xanthomonas alfalfae subsp. citrumelonis]
 gi|158905123|gb|ABW82384.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. coracanae]
 gi|158905125|gb|ABW82385.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. cyamopsidis]
 gi|158905127|gb|ABW82386.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. desmodii]
 gi|158905129|gb|ABW82387.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv.
           desmodiigangetici]
 gi|158905131|gb|ABW82388.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv.
           desmodiirotundifolii]
 gi|158905133|gb|ABW82389.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. dieffenbachiae]
 gi|158905135|gb|ABW82390.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. dieffenbachiae]
 gi|158905137|gb|ABW82391.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. dieffenbachiae]
 gi|158905139|gb|ABW82392.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. dieffenbachiae]
 gi|158905141|gb|ABW82393.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. erythrinae]
 gi|158905143|gb|ABW82394.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. lespedezae]
 gi|158905145|gb|ABW82395.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. manihotis]
 gi|158905147|gb|ABW82396.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. patelii]
 gi|158905149|gb|ABW82397.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. phaseoli]
 gi|158905151|gb|ABW82398.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. phaseoli]
 gi|158905155|gb|ABW82400.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. poinsettiicola]
 gi|158905157|gb|ABW82401.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. ricini]
 gi|158905163|gb|ABW82404.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. syngonii]
 gi|158905165|gb|ABW82405.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. tamarindi]
 gi|158905175|gb|ABW82410.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. vasculorum]
 gi|158905183|gb|ABW82414.1| DNA gyrase subunit beta [Xanthomonas perforans]
 gi|158905185|gb|ABW82415.1| DNA gyrase subunit beta [Xanthomonas citri pv. anacardii]
 gi|158905187|gb|ABW82416.1| DNA gyrase subunit beta [Xanthomonas citri pv. anacardii]
 gi|158905189|gb|ABW82417.1| DNA gyrase subunit beta [Xanthomonas citri pv. bauhiniae]
 gi|158905191|gb|ABW82418.1| DNA gyrase subunit beta [Xanthomonas citri pv. cajani]
 gi|158905193|gb|ABW82419.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|158905197|gb|ABW82421.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|158905199|gb|ABW82422.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|158905201|gb|ABW82423.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|158905203|gb|ABW82424.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|158905205|gb|ABW82425.1| DNA gyrase subunit beta [Xanthomonas citri pv. clitoriae]
 gi|158905207|gb|ABW82426.1| DNA gyrase subunit beta [Xanthomonas citri pv. desmodiilaxiflori]
 gi|158905209|gb|ABW82427.1| DNA gyrase subunit beta [Xanthomonas citri pv. glycines]
 gi|158905211|gb|ABW82428.1| DNA gyrase subunit beta [Xanthomonas citri pv. glycines]
 gi|158905213|gb|ABW82429.1| DNA gyrase subunit beta [Xanthomonas citri pv. malvacearum]
 gi|158905215|gb|ABW82430.1| DNA gyrase subunit beta [Xanthomonas citri pv. malvacearum]
 gi|158905217|gb|ABW82431.1| DNA gyrase subunit beta [Xanthomonas citri pv. mangiferaeindicae]
 gi|158905219|gb|ABW82432.1| DNA gyrase subunit beta [Xanthomonas citri pv. mangiferaeindicae]
 gi|158905221|gb|ABW82433.1| DNA gyrase subunit beta [Xanthomonas citri pv. mangiferaeindicae]
 gi|158905223|gb|ABW82434.1| DNA gyrase subunit beta [Xanthomonas citri pv. mangiferaeindicae]
 gi|158905225|gb|ABW82435.1| DNA gyrase subunit beta [Xanthomonas citri pv. mangiferaeindicae]
 gi|158905227|gb|ABW82436.1| DNA gyrase subunit beta [Xanthomonas citri pv. phaseoli var.
           fuscans]
 gi|158905229|gb|ABW82437.1| DNA gyrase subunit beta [Xanthomonas citri pv. phaseoli var.
           fuscans]
 gi|158905231|gb|ABW82438.1| DNA gyrase subunit beta [Xanthomonas citri pv. phaseoli var.
           fuscans]
 gi|158905233|gb|ABW82439.1| DNA gyrase subunit beta [Xanthomonas citri pv. rhynchosiae]
 gi|158905235|gb|ABW82440.1| DNA gyrase subunit beta [Xanthomonas citri pv. sesbaniae]
 gi|158905237|gb|ABW82441.1| DNA gyrase subunit beta [Xanthomonas citri pv. vignicola]
 gi|158905239|gb|ABW82442.1| DNA gyrase subunit beta [Xanthomonas citri pv. vignicola]
 gi|158905241|gb|ABW82443.1| DNA gyrase subunit beta [Xanthomonas euvesicatoria]
 gi|158905243|gb|ABW82444.1| DNA gyrase subunit beta [Xanthomonas euvesicatoria]
 gi|158905245|gb|ABW82445.1| DNA gyrase subunit beta [Xanthomonas euvesicatoria]
 gi|158905247|gb|ABW82446.1| DNA gyrase subunit beta [Xanthomonas euvesicatoria]
 gi|158905259|gb|ABW82452.1| DNA gyrase subunit beta [Xanthomonas perforans]
 gi|161898736|gb|ABW82420.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|168831114|gb|ACA34894.1| DNA gyrase beta [Xanthomonas citri]
 gi|168831116|gb|ACA34895.1| DNA gyrase beta [Xanthomonas alfalfae]
 gi|168831118|gb|ACA34896.1| DNA gyrase beta [Xanthomonas fuscans]
 gi|227825305|gb|ACP41351.1| DNA gyrase subunit beta [Xanthomonas citri pv. bilvae]
 gi|227825307|gb|ACP41352.1| DNA gyrase subunit beta [Xanthomonas citri pv. bilvae]
 gi|227825309|gb|ACP41353.1| DNA gyrase subunit beta [Xanthomonas citri pv. cajani]
 gi|227825311|gb|ACP41354.1| DNA gyrase subunit beta [Xanthomonas citri pv. cajani]
 gi|227825313|gb|ACP41355.1| DNA gyrase subunit beta [Xanthomonas citri pv. cajani]
 gi|227825315|gb|ACP41356.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825317|gb|ACP41357.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825319|gb|ACP41358.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825321|gb|ACP41359.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825323|gb|ACP41360.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825325|gb|ACP41361.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825327|gb|ACP41362.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825329|gb|ACP41363.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825331|gb|ACP41364.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825333|gb|ACP41365.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825335|gb|ACP41366.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825337|gb|ACP41367.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825339|gb|ACP41368.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825341|gb|ACP41369.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825343|gb|ACP41370.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825345|gb|ACP41371.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825347|gb|ACP41372.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825349|gb|ACP41373.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825351|gb|ACP41374.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825353|gb|ACP41375.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825355|gb|ACP41376.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825357|gb|ACP41377.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825359|gb|ACP41378.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825361|gb|ACP41379.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825363|gb|ACP41380.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825365|gb|ACP41381.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825367|gb|ACP41382.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825369|gb|ACP41383.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825371|gb|ACP41384.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825373|gb|ACP41385.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825375|gb|ACP41386.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825377|gb|ACP41387.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825379|gb|ACP41388.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825381|gb|ACP41389.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825383|gb|ACP41390.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825385|gb|ACP41391.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825387|gb|ACP41392.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825389|gb|ACP41393.1| DNA gyrase subunit beta [Xanthomonas citri pv. citri]
 gi|227825391|gb|ACP41394.1| DNA gyrase subunit beta [Xanthomonas citri pv. malvacearum]
 gi|227825393|gb|ACP41395.1| DNA gyrase subunit beta [Xanthomonas citri pv. malvacearum]
 gi|227825395|gb|ACP41396.1| DNA gyrase subunit beta [Xanthomonas citri pv. malvacearum]
 gi|227825397|gb|ACP41397.1| DNA gyrase subunit beta [Xanthomonas citri pv. aurantifolii]
 gi|227825399|gb|ACP41398.1| DNA gyrase subunit beta [Xanthomonas citri pv. aurantifolii]
 gi|227825401|gb|ACP41399.1| DNA gyrase subunit beta [Xanthomonas citri pv. aurantifolii]
 gi|227825403|gb|ACP41400.1| DNA gyrase subunit beta [Xanthomonas citri pv. cajani]
 gi|294470744|gb|ADE80764.1| DNA gyrase subunit beta [Xanthomonas perforans]
 gi|294470746|gb|ADE80765.1| DNA gyrase subunit beta [Xanthomonas euvesicatoria]
 gi|294470748|gb|ADE80766.1| DNA gyrase subunit beta [Xanthomonas euvesicatoria]
 gi|294470750|gb|ADE80767.1| DNA gyrase subunit beta [Xanthomonas euvesicatoria]
 gi|315439570|gb|ADU19857.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439572|gb|ADU19858.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439574|gb|ADU19859.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439576|gb|ADU19860.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439578|gb|ADU19861.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439580|gb|ADU19862.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439582|gb|ADU19863.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439584|gb|ADU19864.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439586|gb|ADU19865.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439588|gb|ADU19866.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439590|gb|ADU19867.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439592|gb|ADU19868.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439594|gb|ADU19869.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439596|gb|ADU19870.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439598|gb|ADU19871.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439600|gb|ADU19872.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439602|gb|ADU19873.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439604|gb|ADU19874.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439606|gb|ADU19875.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439608|gb|ADU19876.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439610|gb|ADU19877.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439612|gb|ADU19878.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439614|gb|ADU19879.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439618|gb|ADU19881.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439620|gb|ADU19882.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439622|gb|ADU19883.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439624|gb|ADU19884.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439626|gb|ADU19885.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439628|gb|ADU19886.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439630|gb|ADU19887.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439632|gb|ADU19888.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439634|gb|ADU19889.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439636|gb|ADU19890.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439638|gb|ADU19891.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439640|gb|ADU19892.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439642|gb|ADU19893.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439644|gb|ADU19894.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439646|gb|ADU19895.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439648|gb|ADU19896.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439650|gb|ADU19897.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439652|gb|ADU19898.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439654|gb|ADU19899.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439656|gb|ADU19900.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439658|gb|ADU19901.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439660|gb|ADU19902.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439662|gb|ADU19903.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
 gi|315439704|gb|ADU19924.1| DNA gyrase subunit B [Xanthomonas perforans]
 gi|315439706|gb|ADU19925.1| DNA gyrase subunit B [Xanthomonas perforans]
 gi|315439708|gb|ADU19926.1| DNA gyrase subunit B [Xanthomonas perforans]
 gi|315439710|gb|ADU19927.1| DNA gyrase subunit B [Xanthomonas perforans]
 gi|315439712|gb|ADU19928.1| DNA gyrase subunit B [Xanthomonas perforans]
 gi|315439714|gb|ADU19929.1| DNA gyrase subunit B [Xanthomonas perforans]
 gi|315439716|gb|ADU19930.1| DNA gyrase subunit B [Xanthomonas perforans]
          Length = 257

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 83/262 (31%), Positives = 140/262 (53%), Gaps = 14/262 (5%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+++Y++SGGLHGVG+SVVNALS+ L + + R    + Q+++ G P  PL++ E  
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQLEAS 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
              RGT + F+P   IF D   F    L +  +  ++L+  VK     ++          
Sbjct: 61  TK-RGTTLRFKPSVAIFSD-VEFHYDILARRLRELSFLNSGVKITLIDERG------EGR 112

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
           +++F++ GG++++++   + +S +   + +   E  G     V+ A+ W +     +  +
Sbjct: 113 RDDFHYEGGIRSFVEHLAQLKSPLHPNVISVTGEHNGIM---VDVALQWTDAYQETMYCF 169

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIRE 376
            N I   +GGTH +G R ALTR +  Y E     +   +    DD+    + +LSV + +
Sbjct: 170 TNNIPQKDGGTHLAGFRAALTRVLSTYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPD 229

Query: 377 PEFAGQTKTKLVSLDAQRTVEN 398
           P F+ QTK KLVS D +  VEN
Sbjct: 230 PSFSSQTKEKLVSSDVRPAVEN 251


>gi|307592548|gb|ADN65362.1| DNA gyrase subunit B [Chryseobacterium sp. BLS98]
          Length = 174

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 72/149 (48%), Positives = 102/149 (68%), Gaps = 5/149 (3%)

Query: 436 REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
             V RK+ +    LPGKL+DCS      +ELF+VEGDSAGG+AKQ R+R  QA+LPLRGK
Sbjct: 26  EMVQRKSPMGGSGLPGKLSDCSSKDPAESELFLVEGDSAGGTAKQGRDRHFQAILPLRGK 85

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAH 550
           ILNV  +   K+ +N++I ++  ALG    ++          LRY K++IMTDAD+DG+H
Sbjct: 86  ILNVEKSMLHKVYDNEEIKNIYTALGVSVGTEEDSKALNMAKLRYHKIVIMTDADIDGSH 145

Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPL 579
           I++L+LTFF++ M +LIE  +++L  PPL
Sbjct: 146 ISTLILTFFFRFMKELIENGYIYLAPPPL 174


>gi|117675813|emb|CAL69177.1| DNA gyrase subunit B [Subtercola frigoramans]
          Length = 295

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 96/297 (32%), Positives = 149/297 (50%), Gaps = 10/297 (3%)

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             A+L+  ++   + ++   +         + +  GL  Y++     +            
Sbjct: 1   QMAFLNKGLRITLTDERGEED-----VVVSYLYERGLVDYVEYLNRAKKNELVHDEVISF 55

Query: 293 EKKGTHR-GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT- 349
           E + T R  ++E A+ W       + +Y NTI T EGGTHE G R ALT  + KYA    
Sbjct: 56  ESEDTDRKISLEVAMQWTNGYTESVHTYANTINTHEGGTHEEGFRAALTTLVNKYAREKS 115

Query: 350 -QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408
              ++  ++  DD+      ++SV + EP+F GQTKTKL + +A+  V+         + 
Sbjct: 116 ILKEKDENLTGDDVREGLTAVISVKLAEPQFEGQTKTKLGNTEAKAFVQRVAGKELADWF 175

Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELF 467
            + P EA +++   I+ S+ R+  RK RE  R+  +     +PGKL DCS      +E+F
Sbjct: 176 DRKPTEAREIIRKAIQASQARMAARKAREQTRRKGLLEGGGMPGKLKDCSSRDPAKSEIF 235

Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           IVEGDSAGGSA Q RN   QA+LPLRGKILNV  A  ++   N ++  ++ A G   
Sbjct: 236 IVEGDSAGGSAIQGRNPETQAILPLRGKILNVEKARLDRALGNNEVQAMITAFGAGI 292


>gi|11559435|dbj|BAB18784.1| type II DNA topoisomerase [Porphyra tenera]
          Length = 382

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 79/411 (19%), Positives = 132/411 (32%), Gaps = 40/411 (9%)

Query: 113 GRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVT 172
           G GIPV  H K       E+I   L     +D+   ++ GG +G G  + N  S    V 
Sbjct: 1   GAGIPVAMHAK-EGVYVPELIFGHLLTSSNYDDGEKKVVGGRNGYGAKLANIFSTRFVVE 59

Query: 173 VAR--QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA----R 226
            A       + Q F R +              R T      +P +               
Sbjct: 60  TADASSGKTYKQTFKRNMMDRGTPAIRASAKPRDTWTRITFEPDLAKFGMDSLNEDAVAV 119

Query: 227 LLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSE 286
           L       A +   +    +  K                    K Y+   L +       
Sbjct: 120 LQMRVVDMAGVVPGIAVYLNGTKLKI--------------NSFKQYVDLHLADAPDAPRI 165

Query: 287 IFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYA 346
                           E  ++  +     TS+ N+I T +GGTH +     L   I+++ 
Sbjct: 166 HDATSG--------RWEVVVSLIDGQLTQTSFVNSIATTKGGTHFNHDGGQLVSRIQEHI 217

Query: 347 ELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
              +  + + +    +       +   +  P F  QTK  L S  A    +    D    
Sbjct: 218 A--KKHKTLKVKPFQIKSQLSIYVKCLVENPAFDSQTKEMLTSRPASFGSKWVCPDRMAK 275

Query: 407 YLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS-QNIAHGTE 465
                 +  + ++E V+  +E +  +   +    K A          A+ +    +    
Sbjct: 276 -----DLIKSGVVESVLSLAESQQVKELAKTDGGKRARVSGIPKLDDANLAGTRDSAKCT 330

Query: 466 LFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           L + EGDSA   A    +   R    V PLRGK+LNV  A  ++I +N +I
Sbjct: 331 LILTEGDSAKALAISGLSVVGRDYYGVFPLRGKLLNVREATHKQIMDNAEI 381


>gi|223674698|gb|ACN13045.1| DNA gyrase subunit B [Erwinia rhapontici]
 gi|223674702|gb|ACN13047.1| DNA gyrase subunit B [Erwinia rhapontici]
 gi|223674704|gb|ACN13048.1| DNA gyrase subunit B [Erwinia rhapontici]
          Length = 222

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 119/231 (51%), Gaps = 14/231 (6%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+++Y++SGGLHGVG+SVVNALS++L +T+ R+  +  Q +  G+P +PL    + 
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEKLELTIRREGKVHQQIYVHGVPQAPLSVSGET 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            +  GTR+ F P  + F +   F+   L K  +  ++L+  V       ++        +
Sbjct: 61  -DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRELSFLNSGVSIKLEDKRD-------GK 112

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
            + +++ GG+K +++   +N++ I   +F   TEK G     VE A+ W +     I  +
Sbjct: 113 SDHYHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKDGI---GVEVALQWNDGFQENIYCF 169

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
            N I   +GGTH  G R A+TR +  Y +      K  +S   DD      
Sbjct: 170 TNNIPQRDGGTHLVGFRTAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLT 220


>gi|210062238|gb|ACJ06168.1| GyrB [Aeromonas caviae]
          Length = 310

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 106/322 (32%), Positives = 167/322 (51%), Gaps = 16/322 (4%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LSD+L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F  
Sbjct: 1   LSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHY 58

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             L K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I 
Sbjct: 59  EILAKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIH 111

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
            ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR + 
Sbjct: 112 PKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLN 168

Query: 344 KYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ 
Sbjct: 169 NYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMG 228

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNI 460
           +    +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +  
Sbjct: 229 EKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKD 288

Query: 461 AHGTELFIVEGDSAGGSAKQAR 482
              +EL+IVEGDSAGGSAKQ R
Sbjct: 289 PALSELYIVEGDSAGGSAKQGR 310


>gi|116069834|gb|ABI13046.2| DNA gyrase subunit B [Burkholderia sp. WBF6]
          Length = 314

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 98/325 (30%), Positives = 166/325 (51%), Gaps = 26/325 (8%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK------- 198
           ++Y++SGGLHGVG+S VNALS  L +T+ R       +F RG+P + + ++         
Sbjct: 1   NSYKVSGGLHGVGVSCVNALSAWLRLTIRRDGKKHFMEFHRGVPQNRVIEEIDGVAVSPI 60

Query: 199 ----VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
                   RGT + F  D  IFG+   +    L K  +  ++L+  V+   +  +     
Sbjct: 61  QLIGDTENRGTEVHFLADETIFGN-VEYHYDILAKRIRELSFLNNGVRIKLTDQR----- 114

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313
               ++E+F F GG+K +++   +N++++   IF    EK G     VE A+ W +    
Sbjct: 115 --TGKEEDFAFVGGVKGFVEYINKNKAVLHPNIFHISGEKDGV---GVEVAMQWNDSYNE 169

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
            +  + N I   +GGTH +GLR A+TR + KY    +   K  +    DD+      +LS
Sbjct: 170 NVLCFTNNIPQRDGGTHLTGLRAAMTRVLNKYITDHEVAKKAKVETAGDDMREGLSCVLS 229

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V + EP+F+ QTK KLVS + +  VE+ +    + +L++ P +A  +   +++ +  R  
Sbjct: 230 VKVPEPKFSAQTKDKLVSSEVRAPVEDVVAKALEEFLLETPNDAKIICGKIVDAARARDA 289

Query: 432 RRKQREVNRKTA-IRKLRLPGKLAD 455
            RK RE+ R+   +  + LPGKLAD
Sbjct: 290 ARKAREMTRRKGVLDGVGLPGKLAD 314


>gi|37956521|gb|AAP15347.1| gyrase B [Pelobacter propionicus]
          Length = 308

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 92/278 (33%), Positives = 140/278 (50%), Gaps = 15/278 (5%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
               GLHGVG+SVVNALS +L + + R   +  Q + RG+P  PL+   +    RGT+IT
Sbjct: 1   RYRVGLHGVGVSVVNALSCKLELEIRRDGHVHRQSYLRGVPQEPLKIDGETIK-RGTKIT 59

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F PD +IF     F    L +  +  A+L+  VK     D+         +  EF + GG
Sbjct: 60  FWPDDEIFET-TEFSFETLSQRLRELAFLNAGVKIQIIDDRS-------EKSYEFLYEGG 111

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           +K++++     +S + +     K  K       +E AI + +    +I ++ N I T EG
Sbjct: 112 IKSFVEYLNRAKSALHATPIYFKGVKDN---AEIEIAIQYNDSYEEKIFTFANNINTHEG 168

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH SG R ALTR +  YA      + +   I  DDL      ++SV + +P+F GQTKT
Sbjct: 169 GTHLSGFRSALTRTMNAYAAANNLLKNVKVSISGDDLREGIAAVISVKLPDPQFEGQTKT 228

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
           KL + + +  VE  + +    +L +NP  A K+LE  I
Sbjct: 229 KLGNSEIKGFVETLMNEQLATFLEENPQVAKKILEKGI 266


>gi|7500285|pir||T21619 hypothetical protein F32A11.5 - Caenorhabditis elegans
          Length = 263

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 93/254 (36%), Gaps = 21/254 (8%)

Query: 10  STLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT 69
           ++  P++  ++E       I  +         D Y   S      LE + +RP  YIG  
Sbjct: 21  ASSNPKNDDANEDRNVLTTIDRAGGSETIPVEDAYQKKS-----HLEHILLRPDSYIGSI 75

Query: 70  D--EKALHHLFSEVIDNAMD---EVIAGYANLIEVSLD-GNGFLTVVDNGRGIPVENHPK 123
           +  EK         + N  D   E      N I+++++     ++V +NG+GIPV  H K
Sbjct: 76  EHNEKKPM---W--VYNMKDSKLEQRDPKMNTIKITINTEKNEISVYNNGKGIPVTQH-K 129

Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDE--LHVTVARQNTIFS 181
                  E+I   L     +++   +++GG +G G  + N  S +  L  +     + F 
Sbjct: 130 VEKVYVPELIFGALLTSYNYNDDEKKLTGGRNGYGAKLCNLFSTKVTLETSSVDYKSAFK 189

Query: 182 QKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLLKMTQSKAYLSG 239
           Q +   +            ++  T+ITF PD   F  K         + +     A    
Sbjct: 190 QTWINNMTRDEEPTIVPSTDEDFTKITFSPDLAKFKTKELDDDICHLMARRAYDVAGSCK 249

Query: 240 RVKTCWSCDKEIAE 253
            V    +  +   +
Sbjct: 250 GVAVSLNGKRIPIK 263


>gi|164456693|dbj|BAF97839.1| gyrase B subunit [Vibrio metschnikovii]
          Length = 269

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 79/279 (28%), Positives = 140/279 (50%), Gaps = 13/279 (4%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS+++ +T+ R   I +Q +  G+P +PL        + GT + F P 
Sbjct: 1   GLHGVGVSVVNALSEKVLLTIYRGGKIHTQTYRHGVPQAPLAVVGDT-ERTGTTLRFWPS 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            + F +   F    L K  +  ++L+  V      ++E        + + F + GG++ +
Sbjct: 60  AETFTN-IEFHYDILAKRLRELSFLNSGVSIRLQDEREAD------KHDHFMYEGGIRAF 112

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           +     N++ I  ++F    +++     +VE A+ W +     I  + N I   +GGTH 
Sbjct: 113 VTHLNRNKTPIHDKVFHFNHDRED--GTSVEVAMQWNDGFQENIYCFTNNIPQRDGGTHL 170

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G R ALTR +  Y E      K   +   DD       ++SV + +P+F+ QTK KLVS
Sbjct: 171 AGFRAALTRTLNTYMEKEGYSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVS 230

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
            + +  VE+A+ +  + +L ++P EA  +   +I+ +  
Sbjct: 231 SEVKAAVESAMGEKLNEFLAEHPSEAKMVCSKIIDAARA 269


>gi|89143196|emb|CAJ57495.1| DNA gyrase subunit B [Microbacterium liquefaciens]
          Length = 306

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 94/305 (30%), Positives = 153/305 (50%), Gaps = 13/305 (4%)

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEK--------EEFYFPGGLKTYLQTKLENRSLIS 284
             A+L+  ++     ++E +      +         + F++  GL  Y++   + R    
Sbjct: 1   QMAFLNKGLRIELRDERESSAYEVEEDGSTVTKQPGDVFFYERGLVDYVEYLNKVRHAEV 60

Query: 285 SEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
                   E +    + ++E A+ W       + +Y NTI T EGGTHE G R ALT  +
Sbjct: 61  VNDEIIAFESEDTERKISLEVAMQWTTSYTENVFTYANTINTHEGGTHEEGFRAALTTLV 120

Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
            KYA       ++  ++  DD+      ++S+ + EP+F GQTKTKL + +A+  V+  +
Sbjct: 121 NKYARANNLLKEKDDNLSGDDVREGLTAVISIKLGEPQFEGQTKTKLGNTEAKAFVQKVV 180

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQN 459
            D    +  +NP +A  ++   I+ +  RL  RK RE  R+ +      +P KL DC+  
Sbjct: 181 GDQLGDWFERNPNQAKNVIRKAIDAATARLAARKARETARRKSVFESAAMPDKLKDCTSK 240

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
               +E+F+VEGDSAGGSA Q R+   QA+L LRGKILNV  A  +K   N+++  ++QA
Sbjct: 241 DPSISEIFLVEGDSAGGSAVQGRDPHTQAILALRGKILNVERARLDKALGNKEVQAMIQA 300

Query: 520 LGCRT 524
            G   
Sbjct: 301 FGTGI 305


>gi|297520111|ref|ZP_06938497.1| DNA topoisomerase IV subunit B [Escherichia coli OP50]
          Length = 86

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 41/89 (46%), Positives = 58/89 (65%), Gaps = 4/89 (4%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKST 129
           L  +  L V+D+GRG+PV+ HP+      
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPE-EGVPA 86


>gi|66271250|gb|AAY43838.1| DNA gyrase subunit B [Vibrio sp. PIZ 9806]
          Length = 317

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 103/327 (31%), Positives = 167/327 (51%), Gaps = 14/327 (4%)

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+++ +T+ R   I +Q +  G P +PL       ++ GT+I F P  + F +   
Sbjct: 1   VNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETFTN-IE 58

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F    L K  +  ++L+  V      ++E        + + F F GG++ +++    N++
Sbjct: 59  FHYDILAKRLRELSFLNSGVSIKLVDEREAD------KSDHFMFEGGIQAFVEHLNTNKT 112

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I  +IF    E++      VE A+ W +     I  + N I   +GGTH +G R ALTR
Sbjct: 113 PIIEKIFHFDFERED--GIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTR 170

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE+
Sbjct: 171 TLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVES 230

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
           ++ +    +L++NP EA  +   +I+        R+ +    RK A+    LPGKLADC 
Sbjct: 231 SMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQ 290

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNR 484
           +     +EL+IVEGDSAGGSAKQ RNR
Sbjct: 291 EKDPALSELYIVEGDSAGGSAKQGRNR 317


>gi|116069826|gb|ABI13042.2| DNA gyrase subunit B [Burkholderia sp. WBF1]
 gi|116069830|gb|ABI13044.2| DNA gyrase subunit B [Burkholderia sp. WBF3]
 gi|116069832|gb|ABI13045.2| DNA gyrase subunit B [Burkholderia sp. WBF4]
          Length = 314

 Score =  144 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 98/325 (30%), Positives = 166/325 (51%), Gaps = 26/325 (8%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK------- 198
           ++Y++SGGLHGVG+S VNALS  L +T+ R       +F RG+P + + ++         
Sbjct: 1   NSYKVSGGLHGVGVSCVNALSAWLRLTIRRDGKKHFMEFHRGVPQNRVIEEIDGVAVSPI 60

Query: 199 ----VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
                   RGT + F  D  IFG+   +    L K  +  ++L+  V+   +  +     
Sbjct: 61  QLIGETENRGTEVHFLADETIFGN-VEYHYDILAKRIRELSFLNNGVRIKLTDQR----- 114

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313
               ++E+F F GG+K +++   +N++++   IF    EK G     VE A+ W +    
Sbjct: 115 --TGKEEDFAFVGGVKGFVEYINKNKAVLHPNIFHISGEKDGV---GVEVAMQWNDSYNE 169

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
            +  + N I   +GGTH +GLR A+TR + KY    +   K  +    DD+      +LS
Sbjct: 170 NVLCFTNNIPQRDGGTHLTGLRAAMTRVLNKYINDHEVAKKAKVETSGDDMREGLSCVLS 229

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V + EP+F+ QTK KLVS + +  VE+ +    + +L++ P +A  +   +++ +  R  
Sbjct: 230 VKVPEPKFSAQTKDKLVSSEVRAPVEDVVAKALEEFLLETPNDAKIICSKIVDAARARDA 289

Query: 432 RRKQREVNRKTA-IRKLRLPGKLAD 455
            RK RE+ R+   +  + LPGKLAD
Sbjct: 290 ARKAREMTRRKGVLDGVGLPGKLAD 314


>gi|4514441|dbj|BAA75419.1| DNA gyrase subunit B [Acinetobacter calcoaceticus]
          Length = 303

 Score =  143 bits (361), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 94/315 (29%), Positives = 158/315 (50%), Gaps = 16/315 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +LH+ ++R   +  Q++  G P  PL    +  +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSSKLHLMISRAGQVHEQEYQHGDPQYPLRVIGET-DKSG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  ++   +  F+   L +  +  ++L+  V+     ++   E         + 
Sbjct: 60  TTVRFWPS-ELTFTQTIFNVEILARRLRELSFLNAGVRIVLRDERINLE-------HVYD 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   E ++ ++           G     VE A+ W E     +  + N I 
Sbjct: 112 YEGGLSEFVKYINEGKTHLNEIFHFTADTDSGI---GVEVALQWNESYQENVRCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GG+H +G R ALTRG+ +Y E      K  +++  DD       I+SV + +P+F+ 
Sbjct: 169 QKDGGSHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNR 440
           QTK KLVS + +  VE A+   F  YL++NP  A  +   +I         R+ +    R
Sbjct: 229 QTKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLAD 455
           K+A+    LPGKLAD
Sbjct: 289 KSALDIAGLPGKLAD 303


>gi|89143204|emb|CAJ57499.1| DNA gyrase subunit B [Microbacterium oxydans]
          Length = 306

 Score =  143 bits (361), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 95/305 (31%), Positives = 154/305 (50%), Gaps = 13/305 (4%)

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEK--------EEFYFPGGLKTYLQTKLENRSLIS 284
             A+L+  ++     ++E +      +         + F++  GL  Y++   + R    
Sbjct: 1   QMAFLNKGLRIELRDERESSAYEVEEDGATVTKQPGDVFFYERGLVDYVEYLNKVRHAEV 60

Query: 285 SEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
                   E +    + ++E A+ W       + +Y NTI T EGGTHE G R ALT  +
Sbjct: 61  VNDEIIAFESEDTERKISLEVAMQWTTSYTENVFTYANTINTHEGGTHEEGFRAALTTLV 120

Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
            KYA       ++  ++  DD+      ++S+ + EP+F GQTKTKL + +A+  V+  +
Sbjct: 121 NKYARANNLLKEKDDNLSGDDVREGLTAVISIKLGEPQFEGQTKTKLGNTEAKAFVQKVV 180

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQN 459
            D    +L +NP +A  ++   I+ +  RL  RK RE  R+ +      +P KL DC+  
Sbjct: 181 GDQLGDWLERNPNQAKNIIRKAIDAATARLAARKARETARRKSVFESAAMPDKLKDCTSK 240

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
               +E+F+VEGDSAGGSA Q R+   QA+L LRGKILNV  A  +K   N+++  ++QA
Sbjct: 241 DPSISEIFLVEGDSAGGSAVQGRDPHTQAILALRGKILNVERARLDKALGNKEVQAMIQA 300

Query: 520 LGCRT 524
            G   
Sbjct: 301 FGTGI 305


>gi|116069836|gb|ABI13047.2| DNA gyrase subunit B [Burkholderia sp. DhA-54]
          Length = 309

 Score =  143 bits (361), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 86/292 (29%), Positives = 147/292 (50%), Gaps = 25/292 (8%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK--------- 196
           ++Y++SGGLHGVG+S VNALS  L +T+ R       +F RG+P + + ++         
Sbjct: 1   NSYKVSGGLHGVGVSCVNALSAWLRLTIRRDGKKHFMEFHRGVPQNRIIEEIDGVAVSPI 60

Query: 197 --EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
                   RGT + F  D  IFG+   +    L K  +  ++L+  V+   +  +     
Sbjct: 61  QVTGDTENRGTEVHFLADETIFGN-IEYHYDILAKRIRELSFLNNGVRIKLTDQR----- 114

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313
               ++E+F F GG+K +++   +N+S++   IF    EK G     VE A+ W +    
Sbjct: 115 --TGKEEDFAFVGGVKGFVEYINKNKSVLHPNIFHISGEKDGV---GVEVAMQWNDSYNE 169

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
            +  + N I   +GGTH +GLR A+TR + KY    +   K  +    DD+      +LS
Sbjct: 170 NVLCFTNNIPQRDGGTHLTGLRAAMTRVLNKYINDHEVAKKAKVETSGDDMREGLSCVLS 229

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
           V + EP+F+ QTK KLVS + +  VE+ +    + +L++ P +A  +   ++
Sbjct: 230 VKVPEPKFSAQTKDKLVSSEVRAPVEDVVAKALEEFLLETPNDAKIICGKIV 281


>gi|30793732|gb|AAM52928.1| DNA gyrase subunit beta [Aeromonas salmonicida]
          Length = 306

 Score =  143 bits (361), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 110/313 (35%), Positives = 166/313 (53%), Gaps = 15/313 (4%)

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
           ++     +  GT + F P P IF D   +    L K  +  ++L+  V      +++  E
Sbjct: 5   KQIGDSSSGTGTEVRFWPSPTIFTDTL-YHYEILAKRLRELSFLNSGVSIRLQDERDGRE 63

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP 313
                    F + GG+K +++   +N++ I  ++F   TE+ G     VE A+ W +   
Sbjct: 64  -------VHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQDGI---GVEVAMQWNDAYQ 113

Query: 314 EITSY-CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
           E      N I   +GGTH  G R ALTR +  Y +      K   +   DD+    + ++
Sbjct: 114 EGVYLLTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVI 173

Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430
           SV + +P+F+ QTK KLVS + +  VE A+ +    +L++NP +A  ++  +I+ +  R 
Sbjct: 174 SVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARARE 233

Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489
             RK RE   RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+
Sbjct: 234 AARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAI 293

Query: 490 LPLRGKILNVASA 502
           LPL+GKILNV  A
Sbjct: 294 LPLKGKILNVEKA 306


>gi|61506752|dbj|BAD91126.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506754|dbj|BAD91127.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506763|dbj|BAD91130.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506766|dbj|BAD91131.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506769|dbj|BAD91132.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|61506772|dbj|BAD91133.1| DNA gyrase subunit B [Burkholderia glumae]
          Length = 315

 Score =  143 bits (360), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 103/327 (31%), Positives = 161/327 (49%), Gaps = 28/327 (8%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSP 192
            ++ ++SGGLHGVG+S VNALS  L + V R       +F RG+             +SP
Sbjct: 1   QNSLKVSGGLHGVGVSCVNALSSWLRLVVRRNGKKHFMEFHRGVAQNRVLETRDGVEVSP 60

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
           +E   +  N RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   
Sbjct: 61  MEVVGETEN-RGTEVHFMADPTIFGT-VEYHYDILAKRIRELSFLNNGVRIRLTDQRSGK 118

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
           E         F F GG+K +++   + +S++   IF    EK G     VE A+ W +  
Sbjct: 119 EDD-------FAFVGGVKGFVEYINKTKSVLHPTIFHIIGEKDGV---GVEVAMQWNDSY 168

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369
              +  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +
Sbjct: 169 NENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIVDNEIAKKAKVETSGDDMREGLSCV 228

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           LSV + EP+F+ QTK KLVS + +  VE  +    + +L++ P +A  +   ++E +  R
Sbjct: 229 LSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICSKIVEAARAR 288

Query: 430 LRRRKQREVNRKTA-IRKLRLPGKLAD 455
              RK RE+ R+   +  + LPGKLAD
Sbjct: 289 DAARKAREMTRRKGVLDGVGLPGKLAD 315


>gi|158905257|gb|ABW82451.1| DNA gyrase subunit beta [Xanthomonas gardneri]
 gi|315439664|gb|ADU19904.1| DNA gyrase subunit B [Xanthomonas gardneri]
 gi|315439666|gb|ADU19905.1| DNA gyrase subunit B [Xanthomonas gardneri]
 gi|315439668|gb|ADU19906.1| DNA gyrase subunit B [Xanthomonas gardneri]
 gi|315439670|gb|ADU19907.1| DNA gyrase subunit B [Xanthomonas gardneri]
 gi|315439672|gb|ADU19908.1| DNA gyrase subunit B [Xanthomonas gardneri]
 gi|315439674|gb|ADU19909.1| DNA gyrase subunit B [Xanthomonas gardneri]
 gi|315439676|gb|ADU19910.1| DNA gyrase subunit B [Xanthomonas gardneri]
 gi|315439678|gb|ADU19911.1| DNA gyrase subunit B [Xanthomonas gardneri]
 gi|315439680|gb|ADU19912.1| DNA gyrase subunit B [Xanthomonas gardneri]
 gi|315439682|gb|ADU19913.1| DNA gyrase subunit B [Xanthomonas gardneri]
 gi|315439684|gb|ADU19914.1| DNA gyrase subunit B [Xanthomonas gardneri]
 gi|315439686|gb|ADU19915.1| DNA gyrase subunit B [Xanthomonas gardneri]
 gi|315439688|gb|ADU19916.1| DNA gyrase subunit B [Xanthomonas gardneri]
 gi|315439690|gb|ADU19917.1| DNA gyrase subunit B [Xanthomonas gardneri]
 gi|315439692|gb|ADU19918.1| DNA gyrase subunit B [Xanthomonas gardneri]
 gi|315439694|gb|ADU19919.1| DNA gyrase subunit B [Xanthomonas gardneri]
 gi|315439696|gb|ADU19920.1| DNA gyrase subunit B [Xanthomonas gardneri]
 gi|315439698|gb|ADU19921.1| DNA gyrase subunit B [Xanthomonas gardneri]
 gi|315439700|gb|ADU19922.1| DNA gyrase subunit B [Xanthomonas gardneri]
 gi|315439702|gb|ADU19923.1| DNA gyrase subunit B [Xanthomonas gardneri]
          Length = 257

 Score =  143 bits (360), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 83/262 (31%), Positives = 140/262 (53%), Gaps = 14/262 (5%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+++Y++SGGLHGVG+SVVNALS+ L + + R    + Q+++ G P  PL++ E  
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQLEAS 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
              RGT + F+P   IF D   F    L +  +  ++L+  VK     ++          
Sbjct: 61  TK-RGTTLRFKPAVAIFSD-VEFHYDILARRLRELSFLNSGVKIALIDERG------EGR 112

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
           +++F++ GG++++++   + +S +   + +   E  G     V+ A+ W +     +  +
Sbjct: 113 RDDFHYEGGIRSFVEHLAQLKSPLHPNVISVTGEHNGI---VVDVALQWTDAYQETMYCF 169

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIRE 376
            N I   +GGTH +G R ALTR +  Y E     +   +    DD+    + +LSV + +
Sbjct: 170 TNNIPQKDGGTHLAGFRAALTRVLSNYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPD 229

Query: 377 PEFAGQTKTKLVSLDAQRTVEN 398
           P F+ QTK KLVS D +  VEN
Sbjct: 230 PSFSSQTKEKLVSSDVRPAVEN 251


>gi|158905159|gb|ABW82402.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. spondiae]
 gi|158905161|gb|ABW82403.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. spondiae]
          Length = 257

 Score =  143 bits (360), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 82/262 (31%), Positives = 140/262 (53%), Gaps = 14/262 (5%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+++Y++SGGLHGVG+SVVNALS+ L + + R    + Q+++ G P  PL++ E  
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQLEAS 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
              RGT + F+P   IF D   F    L +  +  ++L+  VK     ++          
Sbjct: 61  TK-RGTTLRFKPSVAIFSD-VEFHYDILARRLRELSFLNSGVKITLIDERG------EGR 112

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
           +++F++ GG++++++   + +S +   + +   E  G     ++ A+ W +     +  +
Sbjct: 113 RDDFHYEGGIRSFVEHLAQLKSPLHPNVISVTGEHNGIM---MDVALQWTDAYQETMYCF 169

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIRE 376
            N I   +GGTH +G R ALTR +  Y E     +   +    DD+    + +LSV + +
Sbjct: 170 TNNIPQKDGGTHLAGFRAALTRVLSTYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPD 229

Query: 377 PEFAGQTKTKLVSLDAQRTVEN 398
           P F+ QTK KLVS D +  VEN
Sbjct: 230 PSFSSQTKEKLVSSDVRPAVEN 251


>gi|116069828|gb|ABI13043.2| DNA gyrase subunit B [Burkholderia sp. WBF2]
          Length = 314

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 98/325 (30%), Positives = 166/325 (51%), Gaps = 26/325 (8%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK------- 198
           ++Y++SGGLHGVG+S VNALS  L +T+ R       +F RG+P + + ++         
Sbjct: 1   NSYKVSGGLHGVGVSCVNALSAWLRLTIRRDGKKHFMEFHRGVPQNRVIEEIDGVAVSPI 60

Query: 199 ----VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
                   RGT + F  D  IFG+   +    L K  +  ++L+  V+   +  +     
Sbjct: 61  QLIGETENRGTEVHFLADETIFGN-VEYHYDILAKRIRELSFLNDGVRIKLTDQR----- 114

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313
               ++E+F F GG+K +++   +N++++   IF    EK G     VE A+ W +    
Sbjct: 115 --TGKEEDFAFVGGVKGFVEYINKNKAVLHPNIFHVSGEKDGV---GVEVAMQWNDSYNE 169

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
            +  + N I   +GGTH +GLR A+TR + KY    +   K  +    DD+      +LS
Sbjct: 170 NVLCFTNNIPQRDGGTHLTGLRAAMTRVLNKYINDHEVAKKAKVETSGDDMREGLSCVLS 229

Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           V + EP+F+ QTK KLVS + +  VE+ +    + +L++ P +A  +   +++ +  R  
Sbjct: 230 VKVPEPKFSAQTKDKLVSSEVRAPVEDVVAKALEEFLLETPNDAKIICSKIVDAARARDA 289

Query: 432 RRKQREVNRKTA-IRKLRLPGKLAD 455
            RK RE+ R+   +  + LPGKLAD
Sbjct: 290 ARKAREMTRRKGVLDGVGLPGKLAD 314


>gi|158905249|gb|ABW82447.1| DNA gyrase subunit beta [Xanthomonas fragariae]
 gi|158905251|gb|ABW82448.1| DNA gyrase subunit beta [Xanthomonas fragariae]
 gi|158905253|gb|ABW82449.1| DNA gyrase subunit beta [Xanthomonas fragariae]
 gi|158905255|gb|ABW82450.1| DNA gyrase subunit beta [Xanthomonas fragariae]
          Length = 257

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 83/262 (31%), Positives = 140/262 (53%), Gaps = 14/262 (5%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+++Y++SGGLHGVG+SVVNALS+ L + + R    + Q+++ G P  PL++ E  
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQLEAS 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
              RGT + F+P   IF D   F    L +  +  ++L+  VK     ++          
Sbjct: 61  TK-RGTTLRFKPAVAIFSD-VEFHYEILARRLRELSFLNSGVKIALIDERG------EGR 112

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
           +++F++ GG++++++   + +S +   + +   E  G     V+ A+ W +     +  +
Sbjct: 113 RDDFHYEGGIRSFVEHLAQLKSPLHPNVISVTGEHNGI---VVDVALQWTDAYQETMYCF 169

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIRE 376
            N I   +GGTH +G R ALTR +  Y E     +   +    DD+    + +LSV + +
Sbjct: 170 TNNIPQKDGGTHLAGFRAALTRVLSNYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPD 229

Query: 377 PEFAGQTKTKLVSLDAQRTVEN 398
           P F+ QTK KLVS D +  VEN
Sbjct: 230 PSFSSQTKEKLVSSDVRPAVEN 251


>gi|314909561|gb|ADT62515.1| DNA gyrase subunit beta [Mariprofundus sp. GSB2]
          Length = 311

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 96/323 (29%), Positives = 152/323 (47%), Gaps = 16/323 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS+ L + + R   +  QK+  G P  PL+     +   GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSETLELVIRRDGNVHYQKYCLGEPQEPLKVIGTAKG-SGTEVRFL 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F          L    +  ++L+  V      ++          K  F + GG+ 
Sbjct: 60  PSLETF-SHRNMSFDILSTRLRELSFLNSGVHIEVIDER-------TDNKVVFAYEGGIS 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGT 329
            ++Q     R+ +  +      EK G    +VE ++ W +   E    + N I   +GGT
Sbjct: 112 AFVQHLNRTRTPLHDQCVAMGAEKDGV---SVELSMQWTDSYQEHVFCFTNNIPQKDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +GLR ALTR +  YA       K  +S+  +D       +LSV + +P+F+ QTK KL
Sbjct: 169 HLAGLRGALTRTVNNYATSNGLMKKLKVSLTGEDCREGLTAVLSVKVPDPKFSSQTKEKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRK 446
           VS + +  VE  + +    +  +NP EA +++  V    +     R+ +    RK A+  
Sbjct: 229 VSSEVRPIVEGIVNEKLAEWFEENPKEARRIVGKVSEAATAREAARKARDLTRRKGALDI 288

Query: 447 LRLPGKLADCSQNIAHGTELFIV 469
             LPGKLADC +     +EL++V
Sbjct: 289 SSLPGKLADCQEKDPALSELYLV 311


>gi|158905261|gb|ABW82453.1| DNA gyrase subunit beta [Xanthomonas vesicatoria]
 gi|158905263|gb|ABW82454.1| DNA gyrase subunit beta [Xanthomonas vesicatoria]
 gi|158905265|gb|ABW82455.1| DNA gyrase subunit beta [Xanthomonas vesicatoria]
 gi|158905267|gb|ABW82456.1| DNA gyrase subunit beta [Xanthomonas vesicatoria]
 gi|158905269|gb|ABW82457.1| DNA gyrase subunit beta [Xanthomonas vesicatoria]
 gi|315439718|gb|ADU19931.1| DNA gyrase subunit B [Xanthomonas vesicatoria]
 gi|315439720|gb|ADU19932.1| DNA gyrase subunit B [Xanthomonas vesicatoria]
 gi|315439722|gb|ADU19933.1| DNA gyrase subunit B [Xanthomonas vesicatoria]
 gi|315439724|gb|ADU19934.1| DNA gyrase subunit B [Xanthomonas vesicatoria]
 gi|315439726|gb|ADU19935.1| DNA gyrase subunit B [Xanthomonas vesicatoria]
 gi|315439728|gb|ADU19936.1| DNA gyrase subunit B [Xanthomonas vesicatoria]
 gi|315439730|gb|ADU19937.1| DNA gyrase subunit B [Xanthomonas vesicatoria]
 gi|315439732|gb|ADU19938.1| DNA gyrase subunit B [Xanthomonas vesicatoria]
          Length = 257

 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 83/262 (31%), Positives = 140/262 (53%), Gaps = 14/262 (5%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+++Y++SGGLHGVG+SVVNALS+ L + + R    + Q+++ G P  PL++ E  
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQLEAS 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
              RGT + F+P   IF D   F    L +  +  ++L+  VK     ++          
Sbjct: 61  TK-RGTTLRFKPAVAIFSD-VEFHYDILARRLRELSFLNSGVKIALIDERG------EGR 112

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
           +++F++ GG++++++   + +S +   + +   E  G     V+ A+ W +     +  +
Sbjct: 113 RDDFHYEGGIRSFVEHLAQLKSPLHPNVISVTGEHNGI---VVDVALQWTDAYQETMYCF 169

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIRE 376
            N I   +GGTH +G R ALTR +  Y E     +   +    DD+    + +LSV + +
Sbjct: 170 TNNIPQKDGGTHLAGFRAALTRVLSSYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPD 229

Query: 377 PEFAGQTKTKLVSLDAQRTVEN 398
           P F+ QTK KLVS D +  VEN
Sbjct: 230 PSFSSQTKEKLVSSDVRPAVEN 251


>gi|37725603|gb|AAO23913.1| ParE [Pseudomonas aeruginosa]
          Length = 177

 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 74/180 (41%), Positives = 105/180 (58%), Gaps = 4/180 (2%)

Query: 404 FDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHG 463
           F  +L ++     +L E  I  +  RL+    ++V RK   +   LPGKLADC+      
Sbjct: 1   FSLWLNEHAEIGLQLAELAISNAGRRLK--AGKKVERKKITQGPALPGKLADCAGQEPMR 58

Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS-EKIRNNQQIMDLVQALGC 522
            ELF+VEGDSAGGSAKQAR++  QA++PLRGKILN       E +  +Q++ D+  A+G 
Sbjct: 59  AELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNTWEVDGGEVVLASQEVHDIAVAIGV 118

Query: 523 RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI 582
              +      LRY K+ I+ DAD DG HIA+LL   F +    L+E  H+++  PPL+RI
Sbjct: 119 DPGASDL-AQLRYGKICILADADSDGLHIATLLCALFVRHFRPLVEAGHVYVAMPPLYRI 177


>gi|58415302|emb|CAH04909.1| DNA gyrase subunit B [Cryobacterium psychrophilum]
 gi|117675819|emb|CAL69180.1| DNA gyrase subunit B [Cryobacterium psychrophilum]
          Length = 301

 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 96/298 (32%), Positives = 149/298 (50%), Gaps = 6/298 (2%)

Query: 233 SKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGK 291
             A+L+  +    S ++ + A+  G      F +  GL  Y+Q    ++           
Sbjct: 1   QMAFLNKGLHLKISDERPDHADDNGEVVTNAFMYEQGLVDYVQYLNRSKKADLVNDEIIS 60

Query: 292 TE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            E +    +  +E A+ W       + +Y NTI T EGGTHE G R ALT  + +YA   
Sbjct: 61  FEWEDHDKKMALEVAMQWTTAYTESVHTYANTINTHEGGTHEEGFRAALTTLVNRYAREK 120

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               ++  ++  DD+      ++S+ + EP+F GQTKTKL + +A+  V+    +   H+
Sbjct: 121 GILKEKDDNLTGDDVREGLTAVVSIKLAEPQFEGQTKTKLGNTEAKTFVQRVAGEQLSHW 180

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTEL 466
              NP  A +++   ++ S  R+  RK RE  R+  +     +PGKL DC       +E+
Sbjct: 181 FNMNPNPAREIIRKALQASNARMAARKARETARRKGLLEGGGMPGKLKDCQSKDPSLSEI 240

Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           FIVEGDSAGGSA Q RN   QA+LPLRGKILNV  A  ++   N ++  ++ A G   
Sbjct: 241 FIVEGDSAGGSAVQGRNPETQAILPLRGKILNVEKARLDRALGNNEVQAMITAFGAGI 298


>gi|223674708|gb|ACN13050.1| DNA gyrase subunit B [Erwinia billingiae]
          Length = 222

 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 121/233 (51%), Gaps = 14/233 (6%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+++Y++SGGLHGVG+SVVNALS++L +T+ R+  + +Q +  G+P +PL    + 
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEKLELTIRREGKVHNQIYVHGVPQAPLHVTGET 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            +  GTR+ F P  + F +   F+   L K  +  ++L+  V       ++         
Sbjct: 61  -DLTGTRVRFWPSHQTFTNVTDFEYEILAKRLRELSFLNSGVSIKLEDKRDA-------R 112

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
           ++ +++ GG+K +++   +N++ I   +F   TEK G     VE A+ W +     I  +
Sbjct: 113 QDHYHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKDGI---GVEVALQWNDGFQENIYCF 169

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369
            N I   +GGTH  G R A+TR +  Y +      K  +S   DD       I
Sbjct: 170 TNNIPQRDGGTHLVGFRTAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLTXI 222


>gi|302538539|ref|ZP_07290881.1| DNA gyrase subunit B [Streptomyces sp. C]
 gi|302447434|gb|EFL19250.1| DNA gyrase subunit B [Streptomyces sp. C]
          Length = 155

 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 53/148 (35%), Positives = 81/148 (54%), Gaps = 10/148 (6%)

Query: 43  NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102
            YDAS I++LEGLE +R RPGMY+G   E+ LH L  EV D A++EV+AG A  + ++L 
Sbjct: 18  EYDASRIQVLEGLEAIRKRPGMYVGSDGERGLHQLVFEVADRAVNEVLAGRAGAVHITLT 77

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
            +G + V D+G  +P E           + +L+ L AG +     + ++ GL G G+ V 
Sbjct: 78  ADGSVRVADDGPALPAEE---------ADALLSRLPAGRRHAGR-HVVALGLGGTGLCVA 127

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPL 190
           NALS  L   +        +++ RG  +
Sbjct: 128 NALSSRLTTELRHDGVRLLREYERGKEV 155


>gi|110084486|gb|ABG49400.1| DNA gyrase subunit beta [Aeromonas enteropelogenes]
          Length = 310

 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 107/322 (33%), Positives = 167/322 (51%), Gaps = 16/322 (4%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K 
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDAT-TTGTEVRFWPSPTIFSDTL-FHYEILAKR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F  
Sbjct: 59  LRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHF 111

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +  
Sbjct: 112 TTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKE 168

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +
Sbjct: 169 DYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADF 228

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
           L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL
Sbjct: 229 LLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSEL 288

Query: 467 FIVEGDSAGGSAKQARNRSNQA 488
           +IVEGDSAGGSAKQ RNR NQA
Sbjct: 289 YIVEGDSAGGSAKQGRNRKNQA 310


>gi|239914491|dbj|BAH78924.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914493|dbj|BAH78925.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914497|dbj|BAH78927.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914499|dbj|BAH78928.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914501|dbj|BAH78929.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914513|dbj|BAH78935.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914515|dbj|BAH78936.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914517|dbj|BAH78937.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914521|dbj|BAH78939.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914523|dbj|BAH78940.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914525|dbj|BAH78941.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914529|dbj|BAH78943.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914531|dbj|BAH78944.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914533|dbj|BAH78945.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914535|dbj|BAH78946.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914537|dbj|BAH78947.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914539|dbj|BAH78948.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914541|dbj|BAH78949.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914543|dbj|BAH78950.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914545|dbj|BAH78951.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914547|dbj|BAH78952.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914551|dbj|BAH78954.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914553|dbj|BAH78955.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914555|dbj|BAH78956.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914557|dbj|BAH78957.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914559|dbj|BAH78958.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914561|dbj|BAH78959.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914563|dbj|BAH78960.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914565|dbj|BAH78961.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914567|dbj|BAH78962.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914571|dbj|BAH78964.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914573|dbj|BAH78965.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914575|dbj|BAH78966.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914577|dbj|BAH78967.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914589|dbj|BAH78973.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914591|dbj|BAH78974.1| DNA gyrase subunit B [Ralstonia solanacearum]
          Length = 318

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 87/297 (29%), Positives = 146/297 (49%), Gaps = 30/297 (10%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP------------- 192
           ++Y++SGGLHGVG+S VN LS  L +TV R   +   +F+RGIP +              
Sbjct: 1   NSYKVSGGLHGVGVSCVNGLSKWLKLTVRRDGRVHHMEFARGIPQNRLLEPAEAPDGKMV 60

Query: 193 ---LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
                +     +KRGT + F  D +IF +   +    L K  +  ++L+  V    +  +
Sbjct: 61  EVSPLRMSGTTDKRGTEVHFLADEEIFTN-VEYHYEILSKRIRELSFLNNGVHIKLTDQR 119

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
              E       E+F F GG+K +++   +N++++   +F    EK G     VE ++ W 
Sbjct: 120 SGKE-------EDFAFSGGVKGFVEYINKNKTVLHPTVFNATGEKDGV---GVEVSMQWN 169

Query: 310 E-ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISA 366
           +  N ++  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+    
Sbjct: 170 DGFNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGL 229

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
             +LSV + EP+F+ QTK KLVS + +  VE  +      +L++ P +A  +   ++
Sbjct: 230 TCVLSVKVPEPKFSSQTKDKLVSSEVRLPVEEVVAKALTDFLLETPNDAKIICGKIV 286


>gi|190148860|gb|ACE63405.1| DNA gyrase B subunit [Pseudonocardia sulfidoxydans]
          Length = 305

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 97/309 (31%), Positives = 158/309 (51%), Gaps = 18/309 (5%)

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP---------- 258
           F  DP +F     ++   + +  Q  A+L+  +      ++                   
Sbjct: 1   FWADPDVFETTT-YNIETIRRRLQEMAFLNKGLTIVLRDERNGDSDEAEEPDAEGYVAKV 59

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
           ++  F++PGGL+ ++    + +  I  ++ +   E  G     +E A+ W       + +
Sbjct: 60  KEHVFHYPGGLEDFVAHLNKTKDPIHKKLVSFSGEAPGH---ALEVAMQWNSGYTESVYT 116

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + NTI T EGGTHE G R ALT  + +YA   +   ++  ++  DD+      I+SV ++
Sbjct: 117 FANTINTHEGGTHEEGFRAALTSTVNRYARDKKLLKEKDPALSGDDIREGLAAIVSVKVK 176

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           EP+F GQTKTKL + + +  V+    +    +  +NP EA  ++   ++ ++ R+  RK 
Sbjct: 177 EPQFEGQTKTKLGNTEVKSFVQRISNEWLADWFERNPAEARTIVNKAVQSAQARMAARKA 236

Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE V RK+A     LPGKLADC       +E++IVEGDSAGGSAK  R+   QA+LP+RG
Sbjct: 237 RELVRRKSAGDIGGLPGKLADCRSTDPAKSEVYIVEGDSAGGSAKSGRDSMTQAILPIRG 296

Query: 495 KILNVASAG 503
           KI+NV  A 
Sbjct: 297 KIINVEKAR 305


>gi|66271260|gb|AAY43843.1| DNA gyrase subunit B [Vibrio sp. BRW 9804]
          Length = 283

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 85/292 (29%), Positives = 146/292 (50%), Gaps = 13/292 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       ++ GT+I F P  +
Sbjct: 1   HGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAE 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
            F +   F    L K  +  ++L+  V      ++E        + + F F GG++ +++
Sbjct: 60  TFSN-TEFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KSDHFMFEGGIQAFVE 112

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               N++ I  +IF    E++     +VE A+ W +     I  + N I   +GGTH +G
Sbjct: 113 HLNTNKTPIIEKIFHFDFERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAG 170

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS +
Sbjct: 171 FRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSE 230

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443
            +  VE+A+ +    +L+ NP EA  +   +I+ +      RK RE+ R+  
Sbjct: 231 VKSAVESAMGEKLSEFLIDNPTEAKMVCSKIIDAARAPEAARKAREMTRRKG 282


>gi|239914495|dbj|BAH78926.1| DNA gyrase subunit B [Ralstonia solanacearum]
          Length = 315

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 87/297 (29%), Positives = 146/297 (49%), Gaps = 30/297 (10%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP------------- 192
           ++Y++SGGLHGVG+S VN LS  L +TV R   +   +F+RGIP +              
Sbjct: 1   NSYKVSGGLHGVGVSCVNGLSKWLKLTVRRDGRVHHMEFARGIPQNRLLEPAEAPDGKMV 60

Query: 193 ---LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
                +     +KRGT + F  D +IF +   +    L K  +  ++L+  V    +  +
Sbjct: 61  EVSPLRMSGTTDKRGTEVHFLADEEIFTN-VEYHYEILSKRIRELSFLNNGVHIKLTDQR 119

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
              E       E+F F GG+K +++   +N++++   +F    EK G     VE ++ W 
Sbjct: 120 SGKE-------EDFAFSGGVKGFVEYINKNKTVLHPTVFNATGEKDGV---GVEVSMQWN 169

Query: 310 E-ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISA 366
           +  N ++  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+    
Sbjct: 170 DGFNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGL 229

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
             +LSV + EP+F+ QTK KLVS + +  VE  +      +L++ P +A  +   ++
Sbjct: 230 TCVLSVKVPEPKFSSQTKDKLVSSEVRLPVEEVVAKALTDFLLETPNDAKIICGKIV 286


>gi|223674712|gb|ACN13052.1| DNA gyrase subunit B [Erwinia billingiae]
          Length = 222

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 120/231 (51%), Gaps = 14/231 (6%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+++Y++SGGLHGVG+SVVNALS++L +T+ R+  + +Q +  G+P +PL    + 
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEKLELTIRREGKVHNQIYVHGVPQAPLHVTGET 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            +  GTR+ F P  + F +   F+   L K  +  ++L+  V       ++         
Sbjct: 61  -DLTGTRVRFWPSHQTFTNVTDFEYEILAKRLRELSFLNSGVSIKLEDKRDA-------R 112

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
           ++ +++ GG+K +++   +N++ I   +F   TEK G     VE A+ W +     I  +
Sbjct: 113 QDHYHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKDGI---GVEVALQWNDGFQENIYCF 169

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
            N I   +GGTH  G R A+TR +  Y +      K  +S   DD      
Sbjct: 170 TNNIPQRDGGTHLVGFRTAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLT 220


>gi|60678994|gb|AAX33778.1| DNA gyrase subunit B [Mycoplasma synoviae]
          Length = 168

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 78/168 (46%), Positives = 110/168 (65%)

Query: 412 PIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           P  A ++++++++    RL+  K++E  +K  +    LPGKL+DCS   A  +EL+IVEG
Sbjct: 1   PKFAEEVIKYLLDFKARRLKDEKEKEFQKKKGLGNSSLPGKLSDCSSKNAEESELYIVEG 60

Query: 472 DSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE 531
           +SAGGSAK  R+R  QA+LPL+GKILNV     EKI  N +I+ L+ ALG      +   
Sbjct: 61  NSAGGSAKMGRDRHFQAILPLKGKILNVEKKDIEKILKNDEILSLIAALGAGVGQDFNVN 120

Query: 532 DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
            +RY+KVIIMTDAD DG+HI  LL+TFF++    LIE   L++  PPL
Sbjct: 121 KVRYQKVIIMTDADSDGSHIRVLLITFFFKLFRQLIEYGMLYIAQPPL 168


>gi|169248048|gb|ACA51807.1| DNA gyrase subunit B [Aliivibrio logei]
 gi|169248050|gb|ACA51808.1| DNA gyrase subunit B [Aliivibrio logei]
          Length = 309

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 110/309 (35%), Positives = 158/309 (51%), Gaps = 12/309 (3%)

Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257
              +  GT+I F P  + F +   F    L K  +  ++L+  V       +E       
Sbjct: 9   GTTDTTGTKIRFWPSDQTFANI-EFVYDILAKRLRELSFLNSGVSIRLQDMRE------E 61

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
            + + F F GG+K ++     N++ +  +IF    E+K      VE A+ W +     I 
Sbjct: 62  DKSDHFMFEGGIKAFVTHLNRNKTPVHQKIFYFDAERK-EDGIVVEVAMQWNDSYQENIF 120

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
            Y N I   +GG H SG R ALTR +  + +      K   S   DD       ++SV +
Sbjct: 121 CYTNNIPQRDGGAHLSGFRSALTRTLNSFMDKEGFSKKAKSSASGDDAREGLTAVVSVKV 180

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            +P+F+ QTK KLVS + +  VE+A+ +    +L +NP EA  +   +I+ +  R   RK
Sbjct: 181 PDPKFSSQTKDKLVSSEVKSAVESAMNEKLAEFLAENPGEAKMVCSKIIDAARAREAARK 240

Query: 435 QR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493
            R    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+
Sbjct: 241 AREMTRRKGALDIAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLK 300

Query: 494 GKILNVASA 502
           GKILNV  A
Sbjct: 301 GKILNVEKA 309


>gi|66271242|gb|AAY43834.1| DNA gyrase subunit B [Vibrio proteolyticus]
          Length = 293

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 85/292 (29%), Positives = 144/292 (49%), Gaps = 13/292 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K GT+I F P  +
Sbjct: 1   HGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKTGTQIRFWPSAE 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
            F +   F    L K  +  ++L+  V      ++E        + + F + GG++ ++ 
Sbjct: 60  TFSN-TEFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KHDHFMYEGGIQAFVD 112

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               N++ I  +IF    E++      VE A+ W +     I  + N I   +GGTH +G
Sbjct: 113 HLNTNKTPIIDKIFHFNFERED--GIAVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAG 170

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS +
Sbjct: 171 FRAALTRTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSE 230

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443
            +  VE+A+ +    +LV+ P EA  +   +I+ +      RK RE+ R+  
Sbjct: 231 VKSAVESAMGEKLSEFLVETPNEAKMVCSKIIDAARAPEAARKAREMTRRKG 282


>gi|12060214|dbj|BAB20461.1| b subunit of GyrB typeII topoisomerase [Pseudomonas putida]
          Length = 303

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 95/315 (30%), Positives = 155/315 (49%), Gaps = 16/315 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           + +Y++SGGLHGV +SVVNALS+EL +TV R   I+ Q +  G+P +P+          G
Sbjct: 1   DYSYKVSGGLHGVSVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGD-SETTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+I F+   + F +   F    L K  +  ++L+  V      ++         ++E F 
Sbjct: 60  TQIHFKASGETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDER-------TGKEELFK 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL+ +++    N++ ++         + G     VE A+ W +     +  + N I 
Sbjct: 112 YEGGLRAFVEYLNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH  G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ 
Sbjct: 169 QRDGGTHLVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNR 440
           QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    R
Sbjct: 229 QTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLAD 455
           K A+    LPGKLAD
Sbjct: 289 KGALDIAGLPGKLAD 303


>gi|11078833|dbj|BAB17421.1| DNA gyrase subunit B [Pseudomonas putida]
 gi|11078895|dbj|BAB17452.1| DNA gyrase subunit B [Pseudomonas putida]
          Length = 297

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 95/308 (30%), Positives = 155/308 (50%), Gaps = 15/308 (4%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS++L +TV R   I+ Q +  G+P +P+    +     GT I F+P
Sbjct: 1   GGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGE-SETTGTHIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SAETFKNIH-FSWDILAKRIRELSFLNSGVGILLKDERSGKE-------EFFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++S++F    +++      VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTPVNSQVFHFSVQRED--GVGVEVALQWNDSFNENLLCFTNNIPQRDGGTH 169

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R +LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 170 LVGFRSSLTRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 229

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    RK A+   
Sbjct: 230 SSEVKTAVEQEMNKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIA 289

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 290 GLPGKLAD 297


>gi|4514455|dbj|BAA75426.1| DNA gyrase subunit B [Acinetobacter sp.]
          Length = 303

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 95/315 (30%), Positives = 155/315 (49%), Gaps = 16/315 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS +LH+ + R      Q++  G    PL+   +  +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSKKLHLIIHRAGQTHEQEYCHGDSQYPLKVIGET-DKSG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T I F P  ++   +  F    L +  +  ++L+  V+     ++   E         + 
Sbjct: 60  TVIRFWPS-ELTFSQTIFSVEILARRLRELSFLNAGVRIVLRDERVNFE-------HVYD 111

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GGL  +++   E ++ ++           G     VE A+ W E     +  + N I 
Sbjct: 112 YEGGLSEFVKYINEGKTHLNEIFHFTTDTDSGI---AVEVALQWNESYQENVRCFTNNIP 168

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTRG+ +Y E      K  +++  DD       I+SV + +P+F+ 
Sbjct: 169 QKDGGTHLAGFRAALTRGLNQYLESENILKKEKVAVTGDDAREGLTAIISVKVPDPKFSS 228

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNR 440
           QTK KLVS + +  VE A+   F  YL++NP  A  +   +I         R+ +    R
Sbjct: 229 QTKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRR 288

Query: 441 KTAIRKLRLPGKLAD 455
           K+A+    LPGKLAD
Sbjct: 289 KSALDIAGLPGKLAD 303


>gi|281331996|emb|CAZ39972.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 271

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 84/281 (29%), Positives = 145/281 (51%), Gaps = 13/281 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SV NALS +L V V +  + + Q+FS G  ++ L K E     RGT +
Sbjct: 1   YKVSGGLHGVGVSVDNALSQKLLVDVFQNGSHYQQEFSNGAAVTALAKLEATTK-RGTTV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P    F D   F    L +  +  ++L+  VK   + ++          +++F++ G
Sbjct: 60  RFWPSTVAFHDNVEFHYDILARRLRELSFLNSGVKIVLADERGD------GRRDDFHYEG 113

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G++++++   + ++ +   + +   E  G     V+ A+ W +     +  + N I   +
Sbjct: 114 GIRSFVEHLAQLKTPLHPNVISVTGEHNGI---VVDVALQWTDSYQETMYCFTNNIPQKD 170

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R ALTR +  Y E     +   I++  DD+    + +LSV + +P F+ QTK
Sbjct: 171 GGTHLAGFRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTK 230

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
            KLVS D +  VENA     + +L +NP EA  +   +++ 
Sbjct: 231 EKLVSSDVRPAVENAFGARLEEFLQENPNEAKAIAGKIVDA 271


>gi|159576586|dbj|BAF92840.1| DNA gyrase subunit B [Halomonas sp. Sa4-2I]
          Length = 310

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 95/321 (29%), Positives = 151/321 (47%), Gaps = 16/321 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++ GGLHGVG+SVVNALS+EL +T+ RQ  +  Q +  G+P +PL          GT +
Sbjct: 1   YKVCGGLHGVGVSVVNALSEELKLTIWRQGKVHEQIYRHGVPEAPLAVVGNTEK-SGTLV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+P P  FG+   F    L K  +  ++L+  V      ++   E       E F++ G
Sbjct: 60  RFKPSPLTFGN-IAFHYEILAKRLRELSFLNSGVAIRLIDERSGKE-------ELFHYEG 111

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           GLK ++     N++ ++         + G     VE A+ W +     I  Y N I   +
Sbjct: 112 GLKAFVDHLNTNKAALNPVFHFEMEREDGI---GVEVAMQWNDAFSENIFCYTNNIPQRD 168

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R ALTR +  Y E      K  +    DD       I+SV + +P+F+ QTK
Sbjct: 169 GGTHLAGFRAALTRTLNSYIEAEGLLKKSKVGTTGDDAREGLTAIISVKVPDPKFSSQTK 228

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTA 443
            KLVS + +  VE  +   F  YL++ P EA  ++  +++        R+ +    RK A
Sbjct: 229 DKLVSSEVKTAVEQEMGRLFSEYLIEKPNEAKAIVNKMLDAARAREAARKARDMTRRKGA 288

Query: 444 IRKLRLPGKLADCSQNIAHGT 464
           +    LP ++       +  +
Sbjct: 289 LDIAGLPQRMPTSRPRCSRCS 309


>gi|59859797|gb|AAX09620.1| DNA gyrase subunit B [Pseudomonas entomophila L48]
          Length = 297

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 95/308 (30%), Positives = 154/308 (50%), Gaps = 15/308 (4%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS++L +TV R   I+ Q +  G+P +P+    +     GT I F+P
Sbjct: 1   GGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGE-SETTGTHIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SAETFKNIH-FSWDILAKRIRELSFLNSGVGILLKDERSGKE-------EFFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++S++F    ++       VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTPVNSQVFHFNVQRDD--GVGVEVALQWNDSFNENLLCFTNNIPQRDGGTH 169

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R +LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 170 LVGFRSSLTRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 229

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    RK A+   
Sbjct: 230 SSEVKTAVEQEMNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIA 289

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 290 GLPGKLAD 297


>gi|164456741|dbj|BAF97863.1| gyrase B subunit [Vibrio wodanis]
          Length = 279

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 88/288 (30%), Positives = 145/288 (50%), Gaps = 12/288 (4%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS+++ +T+ R+  IF Q +  G P +PL          
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVELTINRKGEIFQQTYCHGEPQAPLAVVGTTDTTG 60

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
            T+I F P  + F +   F    L K  +  ++L+  V       +E        + + F
Sbjct: 61  -TKIRFWPSEQTFTN-VEFVYDILAKRLRELSFLNSGVSIILQDMRE------EDKSDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            F GG++ ++     N++ +  +IF   +E+K      VE A+ W +     I  Y N I
Sbjct: 113 MFEGGIQAFVTHLNRNKTPVHQKIFYFDSERK-EDGIVVEVAMQWNDSYQENIFCYTNNI 171

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GG H SG R ALTR +  + +      K   S   DD       ++SV + +P+F+
Sbjct: 172 PQRDGGAHLSGFRSALTRTLNSFMDKEGFSKKAKSSASGDDAREGLTAVVSVKVPDPKFS 231

Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
            QTK KLVS + +  VE+A+ +    +L +NP EA  +   +I+ +  
Sbjct: 232 SQTKDKLVSSEVKSAVESAMNEKLAEFLAENPGEAKMVCSKIIDAARA 279


>gi|18916414|dbj|BAB85502.1| DNA gyrase subunit B [Blastobacter denitrificans]
          Length = 235

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 81/244 (33%), Positives = 129/244 (52%), Gaps = 10/244 (4%)

Query: 136 TLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK 195
            LHAGGKFD ++Y++SGGLHGVG+SVVNALS +L + + R++     +F+ G  ++PL+ 
Sbjct: 1   QLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLQLRIWREDKEHLIEFAHGDAVAPLKV 60

Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255
             + + +RGT +TF    + F     +D A L    +  A+L+  V    S  +   EK 
Sbjct: 61  VGEAQGRRGTEVTFLASTETF-KMVEYDYATLEHRLRELAFLNSGVHIVLSDMRHAVEKR 119

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI 315
                EE ++ GG++ +++    N+  I       ++E  G    TVE A+ W +   E 
Sbjct: 120 -----EEMFYSGGVEEFVRYLDRNKKAIVPSPIMVRSEVNGI---TVEAALWWNDSYHEN 171

Query: 316 -TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFI 374
              + N I   +GGTH +G R ALTR +  YA+    K  I++  DD       +LSV +
Sbjct: 172 VLCFTNNIPQRDGGTHLAGFRGALTRQVNGYADAHAKKEKIALTGDDCREGLTAVLSVKV 231

Query: 375 REPE 378
            +P+
Sbjct: 232 PDPK 235


>gi|158905167|gb|ABW82406.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. vasculorum]
 gi|158905169|gb|ABW82407.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. vasculorum]
 gi|158905171|gb|ABW82408.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. vasculorum]
 gi|158905173|gb|ABW82409.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. vasculorum]
 gi|158905177|gb|ABW82411.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. vasculorum]
 gi|158905179|gb|ABW82412.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. vasculorum]
 gi|158905181|gb|ABW82413.1| DNA gyrase subunit beta [Xanthomonas axonopodis pv. vasculorum]
          Length = 257

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 83/262 (31%), Positives = 141/262 (53%), Gaps = 14/262 (5%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+++Y++SGGLHGVG+SVVNALS+ L + + R    + Q+++ G P  PL++ E  
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQLEAS 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
              RGT + F+P   IF D   F    L +  +  ++L+  VK     ++          
Sbjct: 61  TK-RGTTLRFKPSVAIFSD-VEFHYDILARRLRELSFLNSGVKITLIDERG------EGR 112

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
           +++F++ GG++++++   + +S + + + +   E  G     V+ A+ W +     +  +
Sbjct: 113 RDDFHYEGGIRSFVEHLAQLKSPLHANVISVTGEHNGI---VVDVALQWTDAYQETMYCF 169

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIRE 376
            N I   +GGTH +G R ALTR +  Y E     +   +    DD+    + +LSV + +
Sbjct: 170 TNNIPQKDGGTHLAGFRAALTRVLSTYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPD 229

Query: 377 PEFAGQTKTKLVSLDAQRTVEN 398
           P F+ QTK KLVS D +  VEN
Sbjct: 230 PSFSSQTKEKLVSSDVRPAVEN 251


>gi|291335076|gb|ADD94705.1| hypothetical protein [uncultured phage MedDCM-OCT-S09-C23]
          Length = 421

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 70/394 (17%), Positives = 130/394 (32%), Gaps = 68/394 (17%)

Query: 53  EGLEPVRMRPGMYIGG------TDE--------------------KALHHLFSEVIDNAM 86
             LE +  RP  Y+G       TD                      A+  +F E++ NA+
Sbjct: 27  SQLEHILHRPDTYVGSGRQQTFTDSHVGDITSVLPKIKNCSVKYIPAMLRIFVEIVSNAI 86

Query: 87  DEVIAG-----YANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140
           D +          + I+V++D + G  TV ++G  IP++ H +   K   E+I   L   
Sbjct: 87  DNIYRSEEEKVPMSKIKVTIDQDTGLTTVYNDGGWIPLDTHVE-TGKPIPELIFGVLLTS 145

Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDEL--HVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
             +D+       G +G G  + NA S      + V + +     +      +   +K   
Sbjct: 146 DNYDDQKQRSGSGRNGYGAKLTNAFSTMFKIEICVPKDDHFLVYRQEWSNNMRDCKKSTV 205

Query: 199 VRNKRG---TRITFRPDPKIFGD--KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
            R K G   T +++ PD + F          +   +     A ++G        +K    
Sbjct: 206 TRRKVGPPSTCVSWTPDFERFKIKGYTDDMLSVYYRYIYDTAMIAGCSNVSVYLNKTK-- 263

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP 313
                        GGLK Y +   ++   +  E              +    +       
Sbjct: 264 ----------LPIGGLKDYSKLFTDSSESLKIET-------------SDSVVVLTPSSTF 300

Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVF 373
           +  ++ N +   +GG H       + + +         K    I  ++L       +   
Sbjct: 301 KHFAFTNGVHNVDGGVHVESWTSGIFKPL---LARFIKKNQPKISLNELKSFFSIFIKCD 357

Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
           +  PEF+ Q+KT L     + TV     D    +
Sbjct: 358 LPNPEFSSQSKTYLTVPSPKVTVSKKNIDTLMKW 391


>gi|322510995|gb|ADX06308.1| putative DNA gyrase/DNA topoisomerase IV subunit A [Organic Lake
           phycodnavirus 2]
          Length = 602

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 66/155 (42%), Gaps = 11/155 (7%)

Query: 524 TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE-QKHLFLISPPLFRI 582
            ++    ++LRY K++ MTD D+DG+HI  L +  F      L+  +  L  ++ P+ + 
Sbjct: 6   NKTYKNTDELRYNKILFMTDQDLDGSHIKGLCINLFECLWPSLMNIEGFLGFMNTPILKA 65

Query: 583 TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLR 642
           T+  K ++ ++E+  +    E +        I  +KGLG     + KE   D        
Sbjct: 66  TKSGKMIHFYNEQEYELWKSEHQDA--KGWSIKYYKGLGTSTGKEFKEYFKDKKTM---- 119

Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677
            +I      +       NK    K+D R +++   
Sbjct: 120 -DIRLGDKDIDTIDMVFNK---KKSDCRKEWLSNY 150


>gi|58465065|gb|AAW78428.1| DNA topoisomerase II beta subunit [Shewanella atlantica]
          Length = 318

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 103/329 (31%), Positives = 163/329 (49%), Gaps = 15/329 (4%)

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+ VVNALS +L +T  R   ++   ++ G+P  P++      N  GT I F P  + F
Sbjct: 1   VGVFVVNALSHKLQMTFRRDGKLYEXFYTHGVPNEPIKAIGDATN-TGTEIRFWPSSETF 59

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            D   F    L K  +  ++L+  V      +++  +       E F + GG+  ++   
Sbjct: 60  SDTL-FHFDILAKRVRELSFLNSGVGVRLVDERDNRD-------EFFKYDGGISAFVDYL 111

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
             N++ ++ E+F    E++     TVE A+ W +     I  + N I   +GGTH +G R
Sbjct: 112 NVNKTPVNKEVFHFIQERED--GITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFR 169

Query: 336 VALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR +  Y E      K       DD       ++SV + +P+F+ QTK KLVS + +
Sbjct: 170 GALTRNLNTYMEREGYNKKGKTGATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVK 229

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGK 452
             VE  + +    YL+++P EA  ++  +I+        R+ +    RK A+    LPGK
Sbjct: 230 SAVEQTMGEQLGDYLMEHPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGK 289

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQA 481
           LADC +     +E++IVEGDSAGGSAKQ 
Sbjct: 290 LADCQEKDPAHSEIYIVEGDSAGGSAKQG 318


>gi|315439616|gb|ADU19880.1| DNA gyrase subunit B [Xanthomonas euvesicatoria]
          Length = 257

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 83/262 (31%), Positives = 139/262 (53%), Gaps = 14/262 (5%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+++Y++SGGLHGVG+SVVNALS+ L + + R    + Q+++ G P  PL++ E  
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQLEAS 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
              RGT + F+P   IF D   F    L +  +  ++L+  VK     ++          
Sbjct: 61  TK-RGTTLRFKPSVAIFSD-VEFHYDILARRLRELSFLNSGVKITLIDERG------EGR 112

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
           +++F++ GG++++++   + +S +   + +   E  G     V+ A+ W +     +  +
Sbjct: 113 RDDFHYEGGIRSFVEHLAQLKSPLHPNVISVTGEHNGIM---VDVALQWTDAYQETMYCF 169

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIRE 376
            N I   +GGTH +G R ALTR +  Y E         +    DD+    + +LSV + +
Sbjct: 170 TNNIPQKDGGTHLAGFRAALTRVLSTYIEQNGIAXQAKVALTGDDMREGMIAVLSVKVPD 229

Query: 377 PEFAGQTKTKLVSLDAQRTVEN 398
           P F+ QTK KLVS D +  VEN
Sbjct: 230 PSFSSQTKEKLVSSDVRPAVEN 251


>gi|58415300|emb|CAH04908.1| DNA gyrase subunit B [Agromyces luteolus]
          Length = 310

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 93/310 (30%), Positives = 150/310 (48%), Gaps = 18/310 (5%)

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIP-------------EKEEFYFPGGLKTYLQTKL 277
            Q  A+L+  ++   +  +    +                   + F +  GL  Y++   
Sbjct: 1   FQQMAFLNKGLRITLTDMRAGHVEIDPEDTPTTGAITIPVQRTDTFLYERGLVDYVEYLN 60

Query: 278 ENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
           +++            E +       +E A+ W       + +Y NTI T EGGTHE G R
Sbjct: 61  KSKKAELVNDEIISFEAEDTERHIALEVAMQWTTAYTESVHTYANTINTHEGGTHEEGFR 120

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALT  + +YA       ++  ++  DD+      ++SV + EP+F GQTKTKL + +A+
Sbjct: 121 AALTTLVNRYAREKGILKEKDDNLSGDDVREGLTAVISVKLSEPQFEGQTKTKLGNTEAK 180

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGK 452
             V+  + D    +  +NP +A  ++    + +  R+  RK RE  R+   +    +PGK
Sbjct: 181 SFVQRVVGDQLGDWFDRNPNQARDVIRKAQQAATARIAARKAREATRRKGFLETSGMPGK 240

Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512
           L+DC+      +E+F+VEGDSAGGSAK  RN   QA+LPLRGKILNV  A  ++   N +
Sbjct: 241 LSDCTSKDPTVSEIFLVEGDSAGGSAKTGRNPETQAILPLRGKILNVEKARLDRALGNAE 300

Query: 513 IMDLVQALGC 522
           I  ++ A G 
Sbjct: 301 IQAMITAFGT 310


>gi|239914503|dbj|BAH78930.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914505|dbj|BAH78931.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914507|dbj|BAH78932.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914509|dbj|BAH78933.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914527|dbj|BAH78942.1| DNA gyrase subunit B [Ralstonia solanacearum]
          Length = 318

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 87/297 (29%), Positives = 145/297 (48%), Gaps = 30/297 (10%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP------------- 192
           ++Y++SGGLHGVG+S VN LS  L +TV R   +    F+RGIP +              
Sbjct: 1   NSYKVSGGLHGVGVSCVNGLSKWLKLTVRRDGRVHHMDFARGIPQNRLLEPAEAPDGKTV 60

Query: 193 ---LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
                +     +KRGT + F  D +IF +   +    L K  +  ++L+  V    +  +
Sbjct: 61  EVSPLRVSGTTDKRGTEVHFLADEEIFTN-VEYHYEILSKRIRELSFLNNGVHIKLTDQR 119

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
              E       E+F F GG+K +++   +N++++   +F    EK G     VE ++ W 
Sbjct: 120 SGKE-------EDFAFSGGVKGFVEYINKNKTVLHPTVFNATGEKDGV---GVEVSMQWN 169

Query: 310 E-ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISA 366
           +  N ++  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+    
Sbjct: 170 DGFNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGL 229

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
             +LSV + EP+F+ QTK KLVS + +  VE  +      +L++ P +A  +   ++
Sbjct: 230 TCVLSVKVPEPKFSSQTKDKLVSSEVRLPVEEVVAKALTDFLLETPNDAKIICGKIV 286


>gi|304415658|gb|ADM30935.1| gyrase B subunit [Vibrio areninigrae]
          Length = 265

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 80/275 (29%), Positives = 139/275 (50%), Gaps = 13/275 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G+P  PL+         GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSEKVVLTIQRGGHIHTQTYRHGVPQEPLKVVGDTEK-SGTTVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F    L K  +  ++L+  V      ++E        + + F + GG++
Sbjct: 60  PSDETFTN-IEFHYDILAKRLRELSFLNSGVSIKLIDERE------EDKNDHFMYEGGIQ 112

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            ++     N++ I  ++F   +E++     +VE A+ W +     I  + N I   +GGT
Sbjct: 113 AFVTHLNRNKTPIHEKVFHFNSERED--GISVEVAMQWNDGFQEGIFCFTNNIPQRDGGT 170

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R ALTR +  + +      K   S   DD       ++SV + +P+F+ QTK KL
Sbjct: 171 HLAGFRAALTRTLNSFMDKEGYSKKEKTSTSGDDAREGLTAVVSVKVPDPKFSSQTKDKL 230

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
           VS + +  VE+A+ +  + +L ++P EA  +   +
Sbjct: 231 VSSEVKSAVESAMGEKLNEFLAEHPTEAKIVCNKI 265


>gi|297794799|ref|XP_002865284.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297311119|gb|EFH41543.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 658

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 70/385 (18%), Positives = 133/385 (34%), Gaps = 63/385 (16%)

Query: 55  LEPVRMRPGMYIGG---------------------TDEKALHHLFSEVIDNAMDEVIAGY 93
           +E + + P  YIG                      T    L+ +F E++ NA D      
Sbjct: 30  IEHILLCPDSYIGSIEKHTQTLWVYEKEEMVCRSVTYVPGLYKIFDEILVNAADNKRRDP 89

Query: 94  -ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151
             + ++V +D     ++V ++G G+P+E            I          +DN+  + +
Sbjct: 90  SMDSVKVVIDVEKNQISVCNSGDGVPLE-----EGVFVPGIFFGHWLR-RNYDNNVKKTT 143

Query: 152 GGLHGVGISVVNALSDELHVTVARQN---TIFSQKFSRGIPLSPLEKKEKV-RNKRGTRI 207
           G  +G G ++ N  S E  + +A        + Q F   +         K  + +  T++
Sbjct: 144 GRRNGFGATLTNIFSTEFIIEIADGKRSLKKYKQVFENNMGNMSKLFITKCNKGENWTKV 203

Query: 208 TFRPDPKIFGDK--AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           TF+PD K F          A + K     A   G+        K +  K          F
Sbjct: 204 TFKPDLKKFNMTELENDVVALMSKRVFDIAGCLGQTVKVDLNGKRVPIKS---------F 254

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTD 325
              +  YL    ++R+     +      +K   R  V  +            + N+I T 
Sbjct: 255 SDYVDLYLSAASKSRTEPLPRMN-----EKVNDRWEVCVS------------FVNSIATI 297

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           +GGTH   +   +T  I     + + K+  ++ + ++       ++  I  P F  QTK 
Sbjct: 298 KGGTHVDYVTSQVTEYI--VGIVNKKKKYPNVKTHNVKNHLWVFVNALIDNPAFDSQTKE 355

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQ 410
            L   +     +  L +     + +
Sbjct: 356 TLTLPERSFGSKCQLSENILQKVAK 380


>gi|222137878|gb|ACM45452.1| DNA gyrase subunit B [Aeromonas fluvialis]
          Length = 307

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 112/319 (35%), Positives = 168/319 (52%), Gaps = 16/319 (5%)

Query: 188 IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247
            P +PL++        GT + F P   IF D   F    L K  +  ++L+  V      
Sbjct: 1   EPQAPLKQIGDAT-TTGTEVRFWPSSTIFSDTL-FHYEILAKRLRELSFLNSGVSIRLLD 58

Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307
           +++  E         F + GG+K +++   +N++ I  ++F   TE  G     VE A+ 
Sbjct: 59  ERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEHDGI---GVEVAMQ 108

Query: 308 WCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMI 364
           W +     +  + N I   +GGTH  G R ALTR +  Y +      K   +   DD+  
Sbjct: 109 WNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGDDVRE 168

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
             + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++NP +A  ++  +I+
Sbjct: 169 GLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDAKIVVNKIID 228

Query: 425 RSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483
            +  R   RK RE   RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RN
Sbjct: 229 AARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRN 288

Query: 484 RSNQAVLPLRGKILNVASA 502
           R NQA+LPL+GKILNV  A
Sbjct: 289 RKNQAILPLKGKILNVERA 307


>gi|239914511|dbj|BAH78934.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914519|dbj|BAH78938.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914569|dbj|BAH78963.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914579|dbj|BAH78968.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914581|dbj|BAH78969.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914583|dbj|BAH78970.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914585|dbj|BAH78971.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914587|dbj|BAH78972.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914593|dbj|BAH78975.1| DNA gyrase subunit B [Ralstonia solanacearum]
 gi|239914595|dbj|BAH78976.1| DNA gyrase subunit B [Ralstonia solanacearum]
          Length = 318

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 87/297 (29%), Positives = 145/297 (48%), Gaps = 30/297 (10%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP------------- 192
           ++Y++SGGLHGVG+S VN LS  L +TV R   +    F+RGIP +              
Sbjct: 1   NSYKVSGGLHGVGVSCVNGLSKWLKLTVRRDGRVHHMDFARGIPQNRLLEPAEAPDGKTV 60

Query: 193 ---LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249
                +     +KRGT + F  D +IF +   +    L K  +  ++L+  V    +  +
Sbjct: 61  EVSPLRVSGTTDKRGTEVHFLADEEIFTN-VEYHYEILSKRIRELSFLNNGVHIKLTDQR 119

Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309
              E       E+F F GG+K +++   +N++++   +F    EK G     VE ++ W 
Sbjct: 120 SGKE-------EDFAFSGGVKGFVEYINKNKTVLHPTVFNATGEKDGV---GVEVSMQWN 169

Query: 310 E-ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISA 366
           +  N ++  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+    
Sbjct: 170 DGFNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGL 229

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
             +LSV + EP+F+ QTK KLVS + +  VE  +      +L++ P +A  +   ++
Sbjct: 230 TCVLSVKVPEPKFSSQTKDKLVSSEVRLPVEEVVAKALADFLLETPNDAKIICGKIV 286


>gi|289172364|emb|CAX48592.1| DNA gyrase subunit beta [Aeromonas bestiarum]
 gi|289172366|emb|CAX48593.1| DNA gyrase subunit beta [Aeromonas bestiarum]
 gi|289172368|emb|CAX48594.1| DNA gyrase subunit beta [Aeromonas bestiarum]
          Length = 297

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 109/308 (35%), Positives = 165/308 (53%), Gaps = 15/308 (4%)

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +  GT + F P P IF D   +    L K  +  ++L+  V      +++  E     
Sbjct: 1   SSSGTGTEVRFWPSPTIFTDTL-YHYEILAKRLRELSFLNSGVSIRLQDERDGRE----- 54

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
               F + GG+K +++   +N++ I  ++F   TE+ G     VE A+ W +     +  
Sbjct: 55  --VHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQDGI---GVEVAMQWNDAYQEGVYC 109

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH  G R ALTR +  Y +      K   +   DD+    + ++SV + 
Sbjct: 110 FTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVP 169

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           +P+F+ QTK KLVS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK 
Sbjct: 170 DPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAARKA 229

Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE   RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 230 RELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 289

Query: 495 KILNVASA 502
           KILNV  A
Sbjct: 290 KILNVEKA 297


>gi|289600028|gb|ADD12962.1| DNA gyrase subunit beta [Aeromonas salmonicida]
 gi|289600030|gb|ADD12963.1| DNA gyrase subunit beta [Aeromonas salmonicida]
 gi|289600032|gb|ADD12964.1| DNA gyrase subunit beta [Aeromonas salmonicida]
 gi|289600036|gb|ADD12966.1| DNA gyrase subunit beta [Aeromonas salmonicida]
 gi|289600038|gb|ADD12967.1| DNA gyrase subunit beta [Aeromonas salmonicida]
 gi|289600040|gb|ADD12968.1| DNA gyrase subunit beta [Aeromonas salmonicida]
 gi|289600042|gb|ADD12969.1| DNA gyrase subunit beta [Aeromonas salmonicida]
 gi|289600044|gb|ADD12970.1| DNA gyrase subunit beta [Aeromonas salmonicida]
 gi|289600048|gb|ADD12972.1| DNA gyrase subunit beta [Aeromonas salmonicida]
 gi|289600050|gb|ADD12973.1| DNA gyrase subunit beta [Aeromonas salmonicida]
 gi|289600060|gb|ADD12978.1| DNA gyrase subunit beta [Aeromonas salmonicida]
          Length = 308

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 103/319 (32%), Positives = 165/319 (51%), Gaps = 15/319 (4%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L +T+ R   ++ Q +  G P +PL++     +  GT + F P P IF D   +    L 
Sbjct: 1   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTL-YHYEILA 59

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F
Sbjct: 60  KRLRELSFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVEYLNQNKTPIHPKVF 112

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
              TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +
Sbjct: 113 HFSTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMD 169

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                 K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +   
Sbjct: 170 KEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLG 229

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +
Sbjct: 230 EFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALS 289

Query: 465 ELFIVEGDSAGGSAKQARN 483
           EL+IVEGDSAGGSAKQ RN
Sbjct: 290 ELYIVEGDSAGGSAKQGRN 308


>gi|209407290|emb|CAP72530.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 295

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 85/278 (30%), Positives = 137/278 (49%), Gaps = 15/278 (5%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS+EL +T+ R+  ++ Q +  G+P +PL    +     GT I F
Sbjct: 1   VSGGLHGVGVSVVNALSEELVLTIRREGKVWEQTYRHGVPQAPLASVGETEG-SGTEIHF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +P  + F +   F    L K  +  ++L+  V      ++   E       E F + GGL
Sbjct: 60  KPSAETFQNIH-FSWDILAKRLRELSFLNSGVGIVLRDERNAKE-------ELFKYEGGL 111

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
             ++     N++ ++           G     VE A+ W +     +  + N I   +GG
Sbjct: 112 SAFVTYLNTNKTPVNEVFHFNVQRDDGV---GVEVALQWNDSFNENLLCFTNNIPQRDGG 168

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  Y E      K  +S   DD       I+SV + +P+F+ QTK K
Sbjct: 169 THLAGFRSALTRNLNNYIEQEGLAKKHKVSTTGDDAREGLTAIISVKVPDPKFSSQTKDK 228

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           LVS + +  VE  +   F  +L+++P EA  ++  +I+
Sbjct: 229 LVSSEVKTAVEQEMGKHFADFLLEHPNEAKAVVGKMID 266


>gi|283771382|gb|ADB28927.1| topoisomerase II-like protein [Zea mays subsp. mays]
          Length = 380

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 83/401 (20%), Positives = 149/401 (37%), Gaps = 31/401 (7%)

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA--GFDAARLLKMTQSKAYLSGRVKTCWS 246
             S  +  +  + +  TR+TF+PD   F          A + K     A   G+      
Sbjct: 3   KKSEPQITKCKQGENWTRVTFKPDLAKFNMTHLEDDVVALMRKRVVDMAGTLGKTVKVEL 62

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             + +  K                 Y+   +++ +    + F    E+        E  +
Sbjct: 63  DGQRVPIKSF-------------CDYVDLYMKSANCDRPDNFKRIYEQ---VNDRWEVCV 106

Query: 307 AWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISA 366
           +  E   +  S+ N I T  GG+H   +   +   +            + +   ++    
Sbjct: 107 SQSEGQFQQVSFVNRIATIRGGSHVDYVTNQIANHVVAIVNKKNKNANMKL--HNVKSHL 164

Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426
              ++  I  P F  QTK  L +       +  L   F   + +     + ++E V+  +
Sbjct: 165 WVFVNALIDNPAFDSQTKETLTTRQGSFGSKCELSSDFLKKVEK-----SGVIENVLSWA 219

Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLAD-CSQNIAHGTELFIVEGDSAGGSAKQARN-- 483
           + +L +  ++    K +        + A+      +    L + EGDSA   A       
Sbjct: 220 DFKLSKELKKTDGSKKSRISGIPKLEDANEAGGKDSDKCTLILTEGDSAKALAMSGIAVV 279

Query: 484 -RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIM 541
            R    V PLRGK+LNV  A  ++I +N +I  + Q LG +   QY     LRY  ++IM
Sbjct: 280 GRDYYGVFPLRGKLLNVREANHKQIMDNAEIQHIKQILGLQHGKQYESTKGLRYGHLMIM 339

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQK-HLFLISPPLFR 581
           TD D DG+HI  LL+ F +     L++    L     P+ +
Sbjct: 340 TDQDHDGSHIKGLLINFIHSFWPSLLKVPSFLVEFITPIIK 380


>gi|219687723|dbj|BAH09372.1| gyrase B subunit [Vibrio azureus]
          Length = 265

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 83/275 (30%), Positives = 139/275 (50%), Gaps = 13/275 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       ++ GT+I F 
Sbjct: 1   SGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVVGDT-DQTGTQIRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F    L K  +  ++L+  V      ++E        + + F F GG++
Sbjct: 60  PSAETFTN-IEFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KSDHFMFEGGIQ 112

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            ++     N++ I  +IF    E++      VE A+ W +     I  + N I   +GGT
Sbjct: 113 AFVDHLNTNKTPIIDKIFHFDFERED--GIAVEVAMQWNDGFQENIYCFTNNIPQRDGGT 170

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QTK KL
Sbjct: 171 HLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKL 230

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
           VS + +  VE+A+ +    +L++NP EA  +   +
Sbjct: 231 VSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKI 265


>gi|219687725|dbj|BAH09373.1| gyrase B subunit [Vibrio azureus]
          Length = 265

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 83/275 (30%), Positives = 140/275 (50%), Gaps = 13/275 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       ++ GT+I F 
Sbjct: 1   SGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVVGDT-DQTGTQIRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F    L K  +  ++L+  V      ++E+       + + F F GG++
Sbjct: 60  PSAETFTN-IEFHYDILAKRLRELSFLNSGVSIKLIDEREVD------KSDHFMFEGGIQ 112

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            ++     N++ I  +IF    E++      VE A+ W +     I  + N I   +GGT
Sbjct: 113 AFVDHLNTNKTPIIDKIFHFDFERED--GIAVEVAMQWNDGFQENIYCFTNNIPQRDGGT 170

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QTK KL
Sbjct: 171 HLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKL 230

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
           VS + +  VE+A+ +    +L++NP EA  +   +
Sbjct: 231 VSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKI 265


>gi|15919892|dbj|BAB69455.1| gyrase subunitB [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 152

 Score =  141 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 75/139 (53%), Positives = 103/139 (74%), Gaps = 1/139 (0%)

Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
              RK A+    LPGKLADC +     +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKI
Sbjct: 14  MTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI 73

Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLL 555
           LNV  A  +K+ ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LL
Sbjct: 74  LNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLL 133

Query: 556 LTFFYQEMYDLIEQKHLFL 574
           LTFFY++M +++E+ H+++
Sbjct: 134 LTFFYRQMPEIVERGHVYI 152


>gi|11078721|dbj|BAB17365.1| DNA gyrase subunit B [Pseudomonas fulva]
          Length = 296

 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 95/308 (30%), Positives = 150/308 (48%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS++L +TV R   I+ Q +  G+P +P+    +     GT I F+P
Sbjct: 1   GGLHGVGVSVVNALSEQLILTVRRSGKIWEQTYVHGVPQAPMAIVGE-SETTGTHIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SAETFKNIH-FSWDILAKRIRELSFLNSGVGILLKDERSGKE-------EFFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++         + G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTPVNQVFHFSVQREDGV---GVEVALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R +LTR +  Y E      K  +S   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSSLTRSLNSYIEQEGLAKKNKVSTTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQEMNKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|257650106|emb|CAX48587.1| DNA gyrase subunit beta [Aeromonas piscicola]
 gi|257650108|emb|CAX48588.1| DNA gyrase subunit beta [Aeromonas piscicola]
 gi|257650110|emb|CAX48589.1| DNA gyrase subunit beta [Aeromonas piscicola]
 gi|257650112|emb|CAX48590.1| DNA gyrase subunit beta [Aeromonas piscicola]
 gi|289172362|emb|CAX48591.1| DNA gyrase subunit beta [Aeromonas sp. AH-3]
          Length = 297

 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 107/308 (34%), Positives = 163/308 (52%), Gaps = 15/308 (4%)

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
             +  GT + F P P I      +    L K  +  ++L+  V      +++  E     
Sbjct: 1   SSSGTGTEVRFWPSP-IIFTDTLYHYEILAKRLRELSFLNSGVSIRLQDERDGRE----- 54

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
               F + GG+K +++   +N++ I  ++F   TE+ G     VE A+ W +     +  
Sbjct: 55  --VHFCYEGGIKAFVEYLNQNKTPIHPKVFHFSTEQDGI---GVEVAMQWNDAYQEGVYC 109

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           + N I   +GGTH  G R ALTR +  Y +      K   +   DD+    + ++SV + 
Sbjct: 110 FTNNIPQRDGGTHLVGFRTALTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVP 169

Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435
           +P+F+ QTK KLVS + +  VE A+ +    +L++NP +A  ++  +I+ +  R   RK 
Sbjct: 170 DPKFSSQTKDKLVSSEVKTAVEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAARKA 229

Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494
           RE   RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+G
Sbjct: 230 RELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKG 289

Query: 495 KILNVASA 502
           KILNV  A
Sbjct: 290 KILNVEKA 297


>gi|262189964|ref|ZP_06048273.1| DNA gyrase subunit B [Vibrio cholerae CT 5369-93]
 gi|262034149|gb|EEY52580.1| DNA gyrase subunit B [Vibrio cholerae CT 5369-93]
          Length = 344

 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G +             L+   K  +  + I R+KGLGEM   QL ET MD   R ++
Sbjct: 247 IKRGERVQPISS---FAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMM 303

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +       +    LMG + + R  FI+  A  + ++ 
Sbjct: 304 QVTIEDAVG----ADELFTTLMGDQVEPRRAFIETNALKVANLD 343



 Score =  133 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 43/103 (41%), Positives = 68/103 (66%), Gaps = 1/103 (0%)

Query: 507 IRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           + ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +
Sbjct: 1   MLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPE 60

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           LIE+ ++++  PPL+++ +G +  Y  DEE   +        G
Sbjct: 61  LIERGYIYIAQPPLYKVKKGKQEQYIKDEEAMNQYQVALAMDG 103


>gi|153830856|ref|ZP_01983523.1| DNA gyrase subunit B [Vibrio cholerae 623-39]
 gi|148873666|gb|EDL71801.1| DNA gyrase subunit B [Vibrio cholerae 623-39]
          Length = 301

 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G +             L+   K  +  + I R+KGLGEM   QL ET MD   R ++
Sbjct: 204 IKRGERVQPISS---FAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMM 260

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +       +    LMG + + R  FI+  A  + ++ 
Sbjct: 261 QVTIEDAVG----ADELFTTLMGDQVEPRRAFIETNALKVANLD 300



 Score = 99.5 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 38/60 (63%)

Query: 549 AHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           +HI +LLLTFFY++M +LIE+ ++++  PPL+++ +G +  Y  DEE   +        G
Sbjct: 1   SHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVKKGKQEQYIKDEEAMNQYQVALAMDG 60


>gi|289600062|gb|ADD12979.1| DNA gyrase subunit beta [Aeromonas salmonicida]
          Length = 308

 Score =  140 bits (353), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 101/319 (31%), Positives = 163/319 (51%), Gaps = 15/319 (4%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L +T+ R   ++ Q +  G P +PL++     +  GT + F P P IF D   +    L 
Sbjct: 1   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTL-YHYEILA 59

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F
Sbjct: 60  KRLRELSFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVEYLNQNKTPIHPKVF 112

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
              TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +
Sbjct: 113 HFSTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMD 169

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                 K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +   
Sbjct: 170 KEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLG 229

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +
Sbjct: 230 EFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALS 289

Query: 465 ELFIVEGDSAGGSAKQARN 483
           EL+IVE DSAGGSAK  RN
Sbjct: 290 ELYIVERDSAGGSAKHGRN 308


>gi|289600056|gb|ADD12976.1| DNA gyrase subunit beta [Aeromonas salmonicida]
          Length = 308

 Score =  140 bits (353), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 101/319 (31%), Positives = 164/319 (51%), Gaps = 15/319 (4%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L +T+ R   ++ Q +  G P +PL++     +  GT + F P P IF D   +    L 
Sbjct: 1   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTDTL-YHYEILA 59

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F
Sbjct: 60  KRLRELSFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVEYLNQNKTPIHPKVF 112

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
              TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +
Sbjct: 113 HFSTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNTYMD 169

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                 K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +   
Sbjct: 170 KEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLG 229

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +
Sbjct: 230 EFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALS 289

Query: 465 ELFIVEGDSAGGSAKQARN 483
           EL+IVE DSAGGSA+Q RN
Sbjct: 290 ELYIVERDSAGGSAQQGRN 308


>gi|161339270|gb|ABX64386.1| GyrB [Gordonia amicalis]
          Length = 346

 Score =  140 bits (353), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 105/349 (30%), Positives = 169/349 (48%), Gaps = 36/349 (10%)

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK----------------- 249
           + F PDP+IF +   F+A  + +  Q  A+L+  +    +  +                 
Sbjct: 1   LRFWPDPEIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEAPGDANGDEDAP 60

Query: 250 ------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
                       E A+    P+   +++P GL  Y++     +  I + +     + +G 
Sbjct: 61  ATDVAEVVLTETEKAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGFSAKGEGH 120

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++ 
Sbjct: 121 ---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLIKEKD 177

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
             +  DD+      ++S  + +P+F GQTKTKL + + +  V+    +   H+   NP E
Sbjct: 178 GKLTGDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEANPAE 237

Query: 415 ATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A  +++   + ++ R+  R+    V RKTA     LPGKLADC  N     E++IVEGDS
Sbjct: 238 AKIIIKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDS 297

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522
           AGGSAK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A G 
Sbjct: 298 AGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGT 346


>gi|11078731|dbj|BAB17370.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|11078735|dbj|BAB17372.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|11078787|dbj|BAB17398.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|11078911|dbj|BAB17460.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|11078913|dbj|BAB17461.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|146150869|gb|ABQ02691.1| DNA gyrase subunit B [Pseudomonas avellanae]
 gi|146150871|gb|ABQ02692.1| DNA gyrase subunit B [Pseudomonas avellanae]
 gi|315064843|emb|CBX20957.1| DNA gyrase subunit B [Pseudomonas syringae pv. syringae]
          Length = 296

 Score =  140 bits (353), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 95/308 (30%), Positives = 150/308 (48%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+I F+P
Sbjct: 1   GGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDSTGTQIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SAETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++           G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTPVNEVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|41349629|emb|CAD60655.1| DNA gyrase B subunit [Pseudomonas stutzeri CLN100]
          Length = 298

 Score =  140 bits (353), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 84/279 (30%), Positives = 139/279 (49%), Gaps = 15/279 (5%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS+EL +T+ R+  ++ Q +  G+P +PL    +  +  GT I 
Sbjct: 1   QVSGGLHGVGVSVVNALSEELLLTIRREGRVWEQTYRHGVPQAPLAAVGETED-SGTEIH 59

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F+P  + F +   F    L K  +  ++L+  V      ++   E       E F + GG
Sbjct: 60  FKPSAETFQNIH-FSWDILAKRLRELSFLNSGVGIVLRDERNAKE-------ELFKYEGG 111

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           L  ++     N++ ++           G     VE A+ W +     +  + N I   +G
Sbjct: 112 LSAFVAYLNTNKTPVNEVFHFNIQRDDGV---GVEVALQWNDSFNENLLCFTNNIPQRDG 168

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH +G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK 
Sbjct: 169 GTHLAGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKE 228

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           KLVS + +  VE  +   F  +L+++P EA  ++  +I+
Sbjct: 229 KLVSSEVKTAVEQEMGKHFADFLLEHPSEAKAVVGKMID 267


>gi|224797443|gb|ACN62751.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila mojavensis]
 gi|224797445|gb|ACN62752.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila mojavensis]
 gi|224797447|gb|ACN62753.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila mojavensis]
 gi|224797449|gb|ACN62754.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila mojavensis]
 gi|224797451|gb|ACN62755.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila mojavensis]
 gi|224797453|gb|ACN62756.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila mojavensis]
 gi|224797455|gb|ACN62757.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila mojavensis]
          Length = 340

 Score =  140 bits (353), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 111/351 (31%), Positives = 168/351 (47%), Gaps = 18/351 (5%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS    VT+ R + ++S KF+ G  +     K     K GT +TF PD KIF 
Sbjct: 1   GSSVVNALSSTFDVTIYRDHKVWSIKFANGGQVKEPLTKIGTTTKTGTTVTFLPDHKIFK 60

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F  + + +  +  A+L+  VK   +  +         +K  + F  GL+ ++    
Sbjct: 61  VI-DFSFSTISERIRESAFLNSGVKLTLTDQR-------TDKKVSYLFNNGLEEFITYMN 112

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337
           E +  I+  I     EK+      ++++    E N  + S+ N + T EGG+H +G R  
Sbjct: 113 EGKKSITPIIMLKGIEKQIEVEIALQYST---EFNENLLSFANNVKTSEGGSHVAGFRTG 169

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
           LT+ I  YA       ++  ++ S D       I+SV I E   ++ GQTK KL + +A+
Sbjct: 170 LTKVINDYARKEGLLKEKDKNLDSVDTREGLTAIVSVKIPENLIQYEGQTKGKLGTYEAR 229

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---P 450
             VE  +   F  +L +N + A  ++E  +     R   RK RE  R +  R        
Sbjct: 230 LVVETIVAKQFGFWLTENKVNAYTIIEKALLARNVREEARKAREAARNSKKRGNSDRLLT 289

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           GKL           E+F+VEGDSAGGSAK  R+R  QA+LPLRGK++N   
Sbjct: 290 GKLTPAQNRNKFNNEIFLVEGDSAGGSAKLGRDRRFQAILPLRGKVINAEK 340


>gi|224797457|gb|ACN62758.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila wheeleri]
 gi|224797459|gb|ACN62759.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila wheeleri]
 gi|224797461|gb|ACN62760.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila wheeleri]
 gi|224797463|gb|ACN62761.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila wheeleri]
 gi|224797465|gb|ACN62762.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila wheeleri]
 gi|224797467|gb|ACN62763.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila wheeleri]
 gi|224797469|gb|ACN62764.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila aldrichi]
 gi|224797471|gb|ACN62765.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila aldrichi]
 gi|224797473|gb|ACN62766.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila aldrichi]
 gi|224797475|gb|ACN62767.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila aldrichi]
 gi|224797477|gb|ACN62768.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila aldrichi]
 gi|224797479|gb|ACN62769.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila aldrichi]
 gi|224797481|gb|ACN62770.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila aldrichi]
 gi|224797483|gb|ACN62771.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila aldrichi]
 gi|224797485|gb|ACN62772.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila aldrichi]
          Length = 340

 Score =  140 bits (353), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 111/351 (31%), Positives = 167/351 (47%), Gaps = 18/351 (5%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS    VT+ R + ++S KF+ G  +     K     K GT +TF PD KIF 
Sbjct: 1   GSSVVNALSSTFDVTIYRDHKVWSIKFANGGQVKEPLTKIGTTTKTGTTVTFLPDHKIFK 60

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F  + + +  +  A+L+  VK   +  +         +K  + F  GL+ ++    
Sbjct: 61  VI-DFSFSTISERIRESAFLNSGVKLTLTDQR-------TDKKVSYLFNNGLEEFITYMN 112

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337
           E +  I+  I     EK+      ++++    E N  + S+ N + T EGG+H +G R  
Sbjct: 113 EGKKSITPIIMLKGIEKQIEVEIALQYST---EFNENLLSFANNVKTSEGGSHVAGFRTG 169

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
           LT+ I  YA       ++  ++ S D       I+SV I E   ++ GQTK KL + +A+
Sbjct: 170 LTKVINDYARKEGLLKEKDKNLDSVDTREGLTAIVSVKIPENLIQYEGQTKGKLGTYEAR 229

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---P 450
             VE  +   F  +L +N   A  ++E  +     R   RK RE  R +  R        
Sbjct: 230 LVVETIVAKQFGFWLTENKTNAYTIIEKALLARNVREEARKAREAARNSKKRGNSDRLLT 289

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           GKL           E+F+VEGDSAGGSAK  R+R  QA+LPLRGK++N   
Sbjct: 290 GKLTPAQNRNKFNNEIFLVEGDSAGGSAKLGRDRRFQAILPLRGKVINAEK 340


>gi|308522562|dbj|BAJ22894.1| gyrase B subunit [Vibrio sagamiensis]
          Length = 265

 Score =  140 bits (353), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 80/275 (29%), Positives = 141/275 (51%), Gaps = 13/275 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       ++ GT+I F 
Sbjct: 1   SGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVVGDT-DQTGTQIRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F  +  F    L K  +  ++L+  +      ++E        + + + + GG++
Sbjct: 60  PSAETF-SQTEFHYDILAKRLRELSFLNSGISIRLIDEREAD------KSDHYMYEGGIQ 112

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++    N++ I  +IF    E++     +VE A+ W +     I  + N I   +GGT
Sbjct: 113 AFVEHLNTNKTPIIDKIFHFNFERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGT 170

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QTK KL
Sbjct: 171 HLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKL 230

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
           VS + +  VE+A+ +    +L++NP EA  +   +
Sbjct: 231 VSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKI 265


>gi|11078789|dbj|BAB17399.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|11078791|dbj|BAB17400.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|11078795|dbj|BAB17402.1| DNA gyrase subunit B [Pseudomonas syringae]
          Length = 296

 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 95/308 (30%), Positives = 150/308 (48%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+I F+P
Sbjct: 1   GGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYIHGVPQEPMKIVGE-SDSTGTQIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SAETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++           G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTPVNEVFHFNVQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|328926672|gb|AEB66894.1| DNA gyrase subunit B [Enterobacteriaceae bacterium 8N4]
          Length = 283

 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 77/271 (28%), Positives = 138/271 (50%), Gaps = 14/271 (5%)

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+SVVNALS +L +T+ R N +  Q +  G+P + L    +  +  GT++ F P  + F
Sbjct: 1   VGVSVVNALSAKLELTIRRDNKVHQQTYVHGVPQASLTVVGET-DSTGTQVRFWPSHETF 59

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   F+   L K  +  ++L+  V       ++        + + +++ GG+K +++  
Sbjct: 60  TNVVVFEYEILAKRLRELSFLNSGVSIRLEDKRD-------DKADHYHYEGGIKAFVEYL 112

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            +N++ I   +F   TEK G     VE A+ W +     I  + N I   +GGTH +G R
Sbjct: 113 NKNKTPIHPNVFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFR 169

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +
Sbjct: 170 AAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVK 229

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
             VE  + +    YL++NP +A  ++  +I+
Sbjct: 230 SAVEQQMNELLAEYLLENPGDAKIVVGKIID 260


>gi|4586420|dbj|BAA76397.1| topoisomerase IV subunit B [Flavobacterium psychrophilum]
          Length = 379

 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 106/411 (25%), Positives = 179/411 (43%), Gaps = 46/411 (11%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  ++ S GL+GVG   VNALS    V   R N   + +FS G  L+  E   +   ++G
Sbjct: 1   SKAFKKSVGLNGVGTKAVNALSHYFRVESVRDNQQKAAEFSAGN-LTLEEDIIESTKRKG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+++F  D ++      +    ++KM ++  YL+  +   ++ +K             F+
Sbjct: 60  TKVSFIAD-EVIFKNYKYRNEYIIKMLKNYCYLNTGLTIIYNGEK-------------FF 105

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILT 324
              GLK  L+  +    ++   I              +    +  + + E  S+ N   T
Sbjct: 106 SNNGLKDLLEENIAEEDMVYPIIHLLG------DDIEIAITHSKTQYSEEYYSFVNGQNT 159

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
            +GGTH    R ++ + IK++             + D+  S V  + V + EP F  QTK
Sbjct: 160 TQGGTHLGAFRESIVKTIKEFYN-------KPFEASDIRKSIVSAIVVRVEEPVFESQTK 212

Query: 385 TKLVSLDA-------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           TKL S D        +  V + ++   D++L +NP  A  LL  +++   ER      R+
Sbjct: 213 TKLGSTDMGPDLPSVRTFVNDFIKTKLDNFLHKNPETADLLLRKILQAERERKELSGIRK 272

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAH-------GTELFIVEGDSAGGSAKQARNRSNQAVL 490
           + +  A +      KL DC  ++          + LFI EGDSA GS  ++R+ + QAV 
Sbjct: 273 LAKDRAKKSNLHNKKLRDCRVHLTDAKNARSLESTLFITEGDSASGSITKSRDVNTQAVF 332

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541
            LRGK LN      + +  N++   L  AL      +   EDLRY  ++I 
Sbjct: 333 SLRGKPLNSYGMSKKIVYENEEFNLLQAALNI----EESMEDLRYNNIVIA 379


>gi|281332002|emb|CAZ39975.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 255

 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 79/265 (29%), Positives = 137/265 (51%), Gaps = 13/265 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS +L + + +    + Q+++ G  L PL++       RGT + F
Sbjct: 1   VSGGLHGVGVSVVNALSQKLVLDIYQGGFHYQQEYADGAALHPLKQVGPSTK-RGTTLRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  K F D   F    L +  +  ++L+  VK     ++          +++F++ GG+
Sbjct: 60  WPSVKAFHDNVEFHYDILARRLRELSFLNSGVKIVLVDERGD------GRRDDFHYEGGI 113

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           +++++   + ++ +   + +   E  G    TVE A+ W +     +  + N I   +GG
Sbjct: 114 RSFVEHLAQLKTPLHPNVISVTGESNGI---TVEVALQWTDSYQETMYCFTNNIPQKDGG 170

Query: 329 THESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  Y E     +   I++  DD+    + +LSV + +P F+ QTK K
Sbjct: 171 THLAGFRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEK 230

Query: 387 LVSLDAQRTVENALRDPFDHYLVQN 411
           LVS D +  VE+A     + +L +N
Sbjct: 231 LVSSDVRPAVESAFGQRLEEFLQEN 255


>gi|224797487|gb|ACN62773.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797489|gb|ACN62774.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797491|gb|ACN62775.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797493|gb|ACN62776.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
          Length = 340

 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 110/351 (31%), Positives = 166/351 (47%), Gaps = 18/351 (5%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS    VT+ R + ++S KF+ G  +     K     K GT +TF PD KIF 
Sbjct: 1   GSSVVNALSSTFDVTIYRDHKVWSIKFANGGQVKEPLTKIGTTTKTGTTVTFLPDHKIFK 60

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F  + + +  +  A+L+  VK   +  +         +K  + F  GL+ ++    
Sbjct: 61  VI-DFSFSTISERIRESAFLNSGVKLTLTDQR-------TDKKVSYLFNNGLEEFITYMN 112

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337
             +  I+  I     EK+      ++++    E N  + S+ N + T EGG+H +G R  
Sbjct: 113 GGKKSITPIIMLKGIEKQIEVEIALQYST---EFNENLLSFANNVKTSEGGSHVAGFRTG 169

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
           LT+ I  YA       ++  ++ S D       I+SV I E   ++ GQTK KL + +A+
Sbjct: 170 LTKVINDYARKEGLLKEKDKNLDSVDTREGLTAIVSVKIPENLIQYEGQTKGKLGTYEAR 229

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---P 450
             VE  +   F  +L +N   A  ++E  +     R   RK RE  R +  R        
Sbjct: 230 LVVETIVAKQFGFWLTENKANAYTIIEKALLARNVREEARKAREAARNSKKRGNSDRLLT 289

Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
           GKL           E+F+VEGDSAGGSAK  R+R  QA+LPLRGK++N   
Sbjct: 290 GKLTPAQNRNKFNNEIFLVEGDSAGGSAKLGRDRRFQAILPLRGKVINAEK 340


>gi|6691597|dbj|BAA89357.1| topoisomerase IV subunit B [Flavobacterium psychrophilum]
          Length = 379

 Score =  140 bits (352), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 108/411 (26%), Positives = 180/411 (43%), Gaps = 46/411 (11%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  ++ S GL+GVG   VNALS    V   R N   + +FS G  L+  E   +   ++G
Sbjct: 1   SKAFKKSVGLNGVGTKAVNALSHYFRVESVRDNQQKAAEFSAGN-LTLEEDIIESTKRKG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+++F  D  IF +   +    ++KM ++  YL+  +   ++ +K             F+
Sbjct: 60  TKVSFIADEAIFKNY-KYRNEYIIKMLKNYCYLNTGLTIIYNGEK-------------FF 105

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILT 324
              GLK  L+  +    ++   I              +    +  + + E  S+ N   T
Sbjct: 106 SNNGLKDLLEENIAEEDMVYPIIHLLG------DDIEIAITHSKTQYSEEYYSFVNGQNT 159

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
            +GGTH    R ++ + IK++             + D+  S V  + V + EP F  QTK
Sbjct: 160 TQGGTHLGAFRESIVKTIKEFCN-------KPFEASDIRKSIVSAIVVRVEEPVFESQTK 212

Query: 385 TKLVSLDA-------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           TKL S D        +  V + ++   D++L +NP  A  LL  +++   ER      R+
Sbjct: 213 TKLGSTDMGPDLPSVRTFVNDFIKTKLDNFLHKNPETADLLLRKILQAERERKELSGIRK 272

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAH-------GTELFIVEGDSAGGSAKQARNRSNQAVL 490
           + +  A +      KL DC  ++          + LFI EGDSA GS  ++R+ + QAV 
Sbjct: 273 LAKDRAKKSNLHNKKLRDCRVHLTDAKNARSLESTLFITEGDSASGSITKSRDVNTQAVF 332

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541
            LRGK LN      + +  N++   L  AL      +   EDLRY  ++I 
Sbjct: 333 SLRGKPLNSYGMSKKIVYENEEFNLLQAALNI----EESMEDLRYNNIVIA 379


>gi|40019239|emb|CAE92282.1| DNA gyrase subunit B [Moraxella catarrhalis]
          Length = 84

 Score =  140 bits (352), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 40/85 (47%), Positives = 62/85 (72%), Gaps = 2/85 (2%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DNA+DE +AG+ + I + +  +  ++V+DNGRGIPV+ HP+   
Sbjct: 1   DTDDGTGLHHMVFEVVDNAIDEALAGHCDEINIIVHDDESVSVMDNGRGIPVDIHPE-EG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEIS 151
            S  E+I+T LHAGGKFD+++Y++S
Sbjct: 60  VSAAEVIMTVLHAGGKFDDNSYKVS 84


>gi|62461702|gb|AAX83009.1| GyrB [Vibrio campbellii]
          Length = 261

 Score =  140 bits (352), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 79/269 (29%), Positives = 136/269 (50%), Gaps = 13/269 (4%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++  ++GGLHGV +SVVNALS+++ +T+ R   I +Q +  G P +PL        
Sbjct: 1   KFDDNSDRVAGGLHGVRVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDTEK 60

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             GT+I F P  + F +   F    L K  +  ++L+  V      ++E        + +
Sbjct: 61  -TGTQIRFWPSAETFSN-TEFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KSD 112

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F F GG++ +++    N++ I  +IF    E++     +VE A+ W +     I  + N
Sbjct: 113 HFMFEGGIQAFVEHLNTNKTPIIEKIFHFDFERED--GISVEVAMQWNDGFQENIYCFTN 170

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
            I   +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+
Sbjct: 171 NIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPK 230

Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHY 407
           F+ QTK KLVS + +  VE+A+ +    +
Sbjct: 231 FSSQTKDKLVSSEVKSAVESAMGEKLSEF 259


>gi|190148830|gb|ACE63390.1| DNA gyrase B subunit [Pseudonocardia ammonioxydans]
          Length = 351

 Score =  140 bits (352), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 100/294 (34%), Positives = 157/294 (53%), Gaps = 7/294 (2%)

Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307
           + +       P++  F++P GL+ ++    +++  I  +I     E  G     VE A+ 
Sbjct: 61  EPDAEGYVAKPKEYVFHYPNGLEDFVAHLNKSKDPIHRKIVGYTGEGPGHQ---VEVAMQ 117

Query: 308 WCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMI 364
           W       + ++ NTI T EGGTHE G R ALT  + +YA   +   ++  ++  DD+  
Sbjct: 118 WNSGYSESVYTFANTINTHEGGTHEEGFRHALTATVNRYARDKKLIKEKDPALSGDDIRE 177

Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
               I+SV I EP+F GQTKTKL + + +  V+    +    +  +NP EA  ++   + 
Sbjct: 178 GLAAIVSVKISEPQFEGQTKTKLGNTEVKSFVQRVSNEWLADWFERNPNEAKTIVNKAVS 237

Query: 425 RSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483
            ++ RL  R+ RE V RK+A     LPGKL+DC        EL+IVEGDSAGGSAK  R+
Sbjct: 238 SAQARLAARRARELVRRKSAGDIGGLPGKLSDCRSRDPESCELYIVEGDSAGGSAKAGRD 297

Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537
             +QA+LP+RGKI+NV  A  +++  N ++  ++ A+G      +    LRY K
Sbjct: 298 SMHQAILPIRGKIINVEKARIDRVLKNTEVQSIITAMGTGIHDDFDLSKLRYHK 351


>gi|11078821|dbj|BAB17415.1| DNA gyrase subunit B [Pseudomonas caricapapayae]
 gi|11078825|dbj|BAB17417.1| DNA gyrase subunit B [Pseudomonas caricapapayae]
 gi|11078839|dbj|BAB17424.1| DNA gyrase subunit B [Pseudomonas caricapapayae]
 gi|11078855|dbj|BAB17432.1| DNA gyrase subunit B [Pseudomonas amygdali]
 gi|11078857|dbj|BAB17433.1| DNA gyrase subunit B [Pseudomonas amygdali]
 gi|11078879|dbj|BAB17444.1| DNA gyrase subunit B [Pseudomonas amygdali]
          Length = 296

 Score =  140 bits (352), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 95/308 (30%), Positives = 150/308 (48%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+I F+P
Sbjct: 1   GGLHGVGVSVVNALSEILLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDTTGTQIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SAETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++           G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTPVNQVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|6691611|dbj|BAA89364.1| topoisomerase IV subunit B [Flavobacterium psychrophilum]
          Length = 379

 Score =  140 bits (352), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 108/411 (26%), Positives = 180/411 (43%), Gaps = 46/411 (11%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  ++ S GL+GVG   VNALS    V   R N   + +FS G  L+  E   +   ++G
Sbjct: 1   SKAFKKSVGLNGVGTKAVNALSHYFRVESVRDNQQKAAEFSAGN-LTLEEDIIESTKRKG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+++F  D  IF +   +    ++KM ++  YL+  +   ++ +K             F+
Sbjct: 60  TKVSFIADEAIFKNY-KYRNEYIIKMLKNYCYLNTGLTITYNGEK-------------FF 105

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILT 324
              GLK  L+  +    ++   I              +    +  + + E  S+ N   T
Sbjct: 106 SNNGLKDLLEENIAEEDMVYPIIHLLG------DDIEIAITHSKTQYSEEYYSFVNGQNT 159

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
            +GGTH    R ++ + IK++             + D+  S V  + V + EP F  QTK
Sbjct: 160 TQGGTHLCAFRESIVKTIKEFYN-------KPFEASDIRKSIVSAIVVRVEEPVFESQTK 212

Query: 385 TKLVSLDA-------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           TKL S D        +  V + ++   D++L +NP  A  LL  +++   ER      R+
Sbjct: 213 TKLGSTDMGPDLPSVRTFVNDFIKTKLDNFLHKNPETADLLLRKILQAERERKELSGIRK 272

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAH-------GTELFIVEGDSAGGSAKQARNRSNQAVL 490
           + +  A +      KL DC  ++          + LFI EGDSA GS  ++R+ + QAV 
Sbjct: 273 LAKDRAKKSNLHNKKLRDCRVHLTDAKNARSLESTLFITEGDSASGSITKSRDVNTQAVF 332

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541
            LRGK LN      + +  N++   L  AL      +   EDLRY  ++I 
Sbjct: 333 SLRGKPLNSYGMSKKIVYENEEFNLLQAALNI----EESMEDLRYNNIVIA 379


>gi|302122548|gb|ADK92942.1| topoisomerase IV subunit B [Geobacillus subterraneus]
          Length = 246

 Score =  140 bits (352), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 81/256 (31%), Positives = 123/256 (48%), Gaps = 17/256 (6%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           F    Y+ SGGLHGVG SVVNALS+ L VT+ R   I+ Q+F  G       +K    NK
Sbjct: 1   FGQGGYKTSGGLHGVGASVVNALSEWLVVTIHRDGFIYRQRFENGGKPVTTLEKIGTTNK 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT I F+PDP IF     FD   L +  +  A+L   +K     ++           E 
Sbjct: 61  TGTIIQFKPDPAIFSTTV-FDYETLSERLRESAFLLKGLKIELVDER-------TEMCEV 112

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNT 321
           F++  G++ ++    E + ++         E+ G     VE+A    +   E   S+ N 
Sbjct: 113 FHYENGIEAFVAYLNEEKDVLHPV-AYFAGEQNGI---EVEFAFQLHDGYSENVLSFVNN 168

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP-- 377
           + T +GGTHE+G + A+TR   +YA       ++  ++   D+      I+SV I E   
Sbjct: 169 VRTKDGGTHEAGAKTAMTRVFNEYARRVGLLKEKDKNLEGADIREGLSAIVSVRIPEHLL 228

Query: 378 EFAGQTKTKLVSLDAQ 393
           +F GQTK KL + +A+
Sbjct: 229 QFEGQTKGKLGTSEAR 244


>gi|298103863|dbj|BAJ09367.1| DNA gyrase subunit B [Streptococcus intermedius]
          Length = 134

 Score =  140 bits (352), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 59/136 (43%), Positives = 87/136 (63%), Gaps = 2/136 (1%)

Query: 86  MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145
           +DE +AG+A  I+V ++ +  +TVVD+GRGIPV+   K   +  +E + T LHAGGKF  
Sbjct: 1   IDEALAGFATHIQVFIEKDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTILHAGGKFGG 59

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
             Y++SGGLHGVG SVVNALS +L V V +   I  Q++ RG  ++ L+   +  ++ GT
Sbjct: 60  GGYKVSGGLHGVGSSVVNALSTQLDVRVYKNGQIHFQEYRRGQVVADLKIIGET-DRTGT 118

Query: 206 RITFRPDPKIFGDKAG 221
            + F PDP+IF +   
Sbjct: 119 TVHFTPDPEIFTETVE 134


>gi|11078739|dbj|BAB17374.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|11078767|dbj|BAB17388.1| DNA gyrase subunit B [Pseudomonas ficuserectae]
 gi|11078781|dbj|BAB17395.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|11078837|dbj|BAB17423.1| DNA gyrase subunit B [Pseudomonas savastanoi]
 gi|11078849|dbj|BAB17429.1| DNA gyrase subunit B [Pseudomonas savastanoi]
 gi|11078865|dbj|BAB17437.1| DNA gyrase subunit B [Pseudomonas savastanoi]
 gi|11078867|dbj|BAB17438.1| DNA gyrase subunit B [Pseudomonas savastanoi]
 gi|11078869|dbj|BAB17439.1| DNA gyrase subunit B [Pseudomonas savastanoi]
 gi|11078899|dbj|BAB17454.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|11078901|dbj|BAB17455.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|11078903|dbj|BAB17456.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|146150875|gb|ABQ02694.1| DNA gyrase subunit B [Pseudomonas syringae pv. phaseolicola]
 gi|315064863|emb|CBX20967.1| DNA gyrase subunit B [Pseudomonas syringae pv. phaseolicola]
 gi|315064867|emb|CBX20969.1| DNA gyrase subunit B [Pseudomonas syringae pv. phaseolicola]
 gi|317447073|emb|CBX24520.1| DNA gyrase subunit B [Pseudomonas syringae pv. phaseolicola]
 gi|317447075|emb|CBX24521.1| DNA gyrase subunit B [Pseudomonas syringae pv. phaseolicola]
          Length = 296

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 95/308 (30%), Positives = 149/308 (48%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+I F+P
Sbjct: 1   GGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDTTGTQIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
               F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SADTFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++           G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTPVNEVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|11078783|dbj|BAB17396.1| DNA gyrase subunit B [Pseudomonas syringae]
          Length = 296

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 95/308 (30%), Positives = 149/308 (48%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+I F+P
Sbjct: 1   GGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDTTGTQIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
               F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SADTFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++           G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTPVNEVFHFNVQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|11078793|dbj|BAB17401.1| DNA gyrase subunit B [Pseudomonas syringae]
          Length = 296

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 95/308 (30%), Positives = 149/308 (48%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+I F+P
Sbjct: 1   GGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYIHGVPQEPMKIVGE-SDSTGTQIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
               F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SADTFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++           G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTPVNEVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|54125547|gb|AAV30540.1| gyrase B [Citrobacter freundii]
          Length = 287

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 77/269 (28%), Positives = 135/269 (50%), Gaps = 14/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS +L + + R+  +  Q +  G+P +PL    +     GT++ F P  + F +
Sbjct: 1   VSVVNALSQKLELVIRREGKVHQQTYVHGVPQAPLAVTGET-EATGTQVRFWPSHETFTN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F+   L K  +  ++L+  V       ++  E       + F++ GG+K +++   +
Sbjct: 60  VVEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNK 112

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ I   IF   TEK G     VE A+ W +     I  + N I   +GGTH +G R A
Sbjct: 113 NKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAA 169

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           +TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  
Sbjct: 170 MTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSA 229

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  + +    YL++NP +A  ++  +I+
Sbjct: 230 VEQQMNELLSEYLLENPSDAKIVVGKIID 258


>gi|161783789|gb|ABX79467.1| GyrB [Streptomyces sp. AB3]
          Length = 344

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 102/345 (29%), Positives = 163/345 (47%), Gaps = 17/345 (4%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
               ++Q +  G+P +PL + E      GT +TF  D  IF     +    L +  Q  A
Sbjct: 2   DGHRWTQDYKLGVPTAPLXRHEAT-EXTGTSVTFWADGDIFETT-DYSFETLSRRFQEMA 59

Query: 236 YLSGRVKTCWSCDKEI-----------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
           +L+  ++   + ++E             ++    +   +++ GG+  + +     +  + 
Sbjct: 60  FLNKGLRINLTDERESAKATAGADEAGEDEKHXVKSVSYHYEGGIVDFXKYLNSRKGEVV 119

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
                    +      ++  A+ W       + S+ N I T E GTHE G   ALT  I 
Sbjct: 120 HPTVIXLXAEDRERHLSLXVAMQWNGGYTEGVYSFANIIHTHEXGTHEEGFXAALTSLIN 179

Query: 344 KYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
           KYA   +    +   +  DD+      I+SV + EP+F GQTKTKL + + +  V+  + 
Sbjct: 180 KYARDKKLLRDKDDXLTGDDIREGLTAIISVKLSEPQFEGQTKTKLGNTEVKTFVQKVVY 239

Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNI 460
           +    +L +NP EA  ++   I  +  R+  RK R++ R+  +     LPGKL+DC  N 
Sbjct: 240 EHLADWLDRNPNEAADIVRKGIAAATARVAARKARDLTRRKGLLETASLPGKLSDCQSND 299

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505
               E+FIVEGDSAGGSAK  RN   QA+LP+RGKILNV  A  +
Sbjct: 300 PTKCEIFIVEGDSAGGSAKSGRNPEYQAILPIRGKILNVEKARID 344


>gi|1944015|dbj|BAA19519.1| subunit B protein of DNA gyrase [Comamonas terrigena]
          Length = 330

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 105/338 (31%), Positives = 164/338 (48%), Gaps = 31/338 (9%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR------------GIPL 190
           FD ++Y++SGGLHGVG+S VNALS +L +TV R        FSR            G+ +
Sbjct: 1   FDQNSYKVSGGLHGVGVSCVNALSVKLKLTVRRDGKTHEIDFSRGFVQNRLIEVVDGVEI 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           SP+       +KRGT++ F PD +IF +   F    L K  +  ++L+  V+     +++
Sbjct: 61  SPMRIIGDT-DKRGTKVHFLPDTEIFKENNEFHYEILAKRLRELSFLNNGVRIRLKDERD 119

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT-------HRGTVE 303
             E         F   GG++ +++    N+  +    F     +              VE
Sbjct: 120 GKEDD-------FSGAGGVQGFVKFINGNKKDLDITPFYATGSRPAESYGGIPGTEIGVE 172

Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISD 360
            A+ W +    ++  + N I   +GGTH +GLR A+TR I KY        K  + I  D
Sbjct: 173 VAMQWNDGYTEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYITDNDLAKKAKVEISGD 232

Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420
           D+      +LSV + EP+F+ QTK KLVS + +  VE+ +      YL + P +A KL  
Sbjct: 233 DMREGLCAVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVAKTLTEYLEEKPNDAKKLCG 292

Query: 421 WVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCS 457
            +I+ +  R   R+ RE+ R+   +  + LPGKLADC 
Sbjct: 293 KIIDAARAREAARRAREMTRRKGVLDGMGLPGKLADCQ 330


>gi|289600054|gb|ADD12975.1| DNA gyrase subunit beta [Aeromonas caviae]
          Length = 307

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 104/319 (32%), Positives = 164/319 (51%), Gaps = 16/319 (5%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F    L 
Sbjct: 1   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEILA 58

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F
Sbjct: 59  KRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVF 111

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
              TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +
Sbjct: 112 HFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNNYMD 168

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                 K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +   
Sbjct: 169 KEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLA 228

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +
Sbjct: 229 DFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALS 288

Query: 465 ELFIVEGDSAGGSAKQARN 483
           EL+IVEGDSAGGSAKQ RN
Sbjct: 289 ELYIVEGDSAGGSAKQGRN 307


>gi|209408306|emb|CAP19838.1| DNA gyrase subunit B [Pseudomonas xanthomarina]
          Length = 290

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 85/277 (30%), Positives = 137/277 (49%), Gaps = 15/277 (5%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS+EL +T+ R+  ++ Q +  G+P +PL       +  GT+I F+
Sbjct: 1   SGGLHGVGVSVVNALSEELILTIRREGKVWEQIYRHGVPQAPLAAVGDTED-SGTQIHFK 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F    L K  +  ++L+  V      ++   E       E F + GGL 
Sbjct: 60  PSAETFQNIH-FSWDILAKRLRELSFLNSGVGIVLRDERNAKE-------ELFKYEGGLS 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            ++     N++ ++           G     VE A+ W +     +  + N I   +GGT
Sbjct: 112 AFVAYLNTNKTPVNEVFHFNVQRDDGV---GVEVALQWNDSFNENLLCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KL
Sbjct: 169 HLAGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VS + +  VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 VSSEVKTAVEQEMGKHFADFLLENPNEAKAVVGKMID 265


>gi|315064847|emb|CBX20959.1| DNA gyrase subunit B [Pseudomonas syringae pv. actinidiae]
 gi|315064851|emb|CBX20961.1| DNA gyrase subunit B [Pseudomonas syringae pv. actinidiae]
 gi|315064855|emb|CBX20963.1| DNA gyrase subunit B [Pseudomonas syringae pv. actinidiae]
 gi|315064859|emb|CBX20965.1| DNA gyrase subunit B [Pseudomonas syringae pv. actinidiae]
          Length = 296

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 95/308 (30%), Positives = 149/308 (48%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+I F+P
Sbjct: 1   GGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYIHGVPQEPMKIVGE-SDSTGTQIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
               F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SADTFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++           G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTPVNEVFHFNVQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|312101616|ref|XP_003149691.1| hypothetical protein LOAG_14142 [Loa loa]
 gi|307755144|gb|EFO14378.1| hypothetical protein LOAG_14142 [Loa loa]
          Length = 421

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 82/415 (19%), Positives = 139/415 (33%), Gaps = 36/415 (8%)

Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162
               +++ +NGRGIPVE HP         +I  TL     +D+S  +I GG +G G  + 
Sbjct: 23  EKNTISIWNNGRGIPVEIHP-TEGVYVPTMIFGTLFTSSNYDDSELKIVGGRNGFGAKLC 81

Query: 163 NALSDELHVTVARQN----TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD--PKIF 216
           N  S E  V    +          + +      P+           T +TF+PD      
Sbjct: 82  NIFSTEFCVETCTKQSGLRFFQCWRKNMNDVDDPIISNVDTNASDYTCVTFKPDLSKFKL 141

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                     +++ T   A     V    +  K           E   F   +K +    
Sbjct: 142 STLDEDTIEVMIRRTVDIAGTLDGVHVFLNGTK----------IEVSGFEDYVKLFSTNT 191

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRV 336
            EN    +   +              + A+A   +    TS+ N I T +GG H   +  
Sbjct: 192 SENFENFTVPSYC-------NVNNRWQIAVARSNDGYNHTSFVNNINTLKGGRHVDYIMN 244

Query: 337 ALTRGIK-KYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
            L   +K +  +    ++ IS     +       ++  I  P F  Q+K  L +      
Sbjct: 245 QLVSRLKQEIRQRCDCEKLIST--HQVKNRLHIFVNSLIENPAFESQSKEYLTTSVKDFG 302

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455
               + + F     ++      LL  + E+    L R  +R +   + +          D
Sbjct: 303 STCIIPESFYENFFKDSDIIHYLLCDISEQHTASLNRSIKRPLWDLSKLE------DAVD 356

Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQA---RNRSNQAVLPLRGKILNVASAGSEKI 507
                 +   L + EGDSA   A        R    V P+RGK+ NV    ++ +
Sbjct: 357 AGTKNGYNCTLIVTEGDSAKALAVAGLAVIGRKQYGVFPVRGKLTNVRGMDAKMV 411


>gi|6691591|dbj|BAA89354.1| topoisomerase IV subunit B [Flavobacterium psychrophilum]
 gi|6691593|dbj|BAA89355.1| topoisomerase IV subunit B [Flavobacterium psychrophilum]
 gi|6691595|dbj|BAA89356.1| topoisomerase IV subunit B [Flavobacterium psychrophilum]
 gi|6691603|dbj|BAA89360.1| topoisomerase IV subunit B [Flavobacterium psychrophilum]
 gi|6691613|dbj|BAA89365.1| topoisomerase IV subunit B [Flavobacterium psychrophilum]
 gi|6691615|dbj|BAA89366.1| topoisomerase IV subunit B [Flavobacterium psychrophilum]
          Length = 379

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 108/411 (26%), Positives = 180/411 (43%), Gaps = 46/411 (11%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  ++ S GL+GVG   VNALS    V   R N   + +FS G  L+  E   +   ++G
Sbjct: 1   SKAFKKSVGLNGVGTKAVNALSHYFRVESVRDNQQKAAEFSAGN-LTLEEDIIESTKRKG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+++F  D  IF +   +    ++KM ++  YL+  +   ++ +K             F+
Sbjct: 60  TKVSFIADEAIFKNY-KYRNEYIIKMLKNYCYLNTGLTIIYNGEK-------------FF 105

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILT 324
              GLK  L+  +    ++   I              +    +  + + E  S+ N   T
Sbjct: 106 SNNGLKDLLEENIAEEDMVYPIIHLLG------DDIEIAITHSKTQYSEEYYSFVNGQNT 159

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
            +GGTH    R ++ + IK++             + D+  S V  + V + EP F  QTK
Sbjct: 160 TQGGTHLGAFRESIVKTIKEFYN-------KPFEASDIRKSIVSAIVVRVEEPVFESQTK 212

Query: 385 TKLVSLDA-------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           TKL S D        +  V + ++   D++L +NP  A  LL  +++   ER      R+
Sbjct: 213 TKLGSTDMGPDLPSVRTFVNDFIKTKLDNFLHKNPETADLLLRKILQAERERKELSGIRK 272

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAH-------GTELFIVEGDSAGGSAKQARNRSNQAVL 490
           + +  A +      KL DC  ++          + LFI EGDSA GS  ++R+ + QAV 
Sbjct: 273 LAKDRAKKSNLHNKKLRDCRVHLTDAKNARSLESTLFITEGDSASGSITKSRDVNTQAVF 332

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541
            LRGK LN      + +  N++   L  AL      +   EDLRY  ++I 
Sbjct: 333 SLRGKPLNSYGMSKKIVYENEEFNLLQAALNI----EESMEDLRYNNIVIA 379


>gi|11078777|dbj|BAB17393.1| DNA gyrase subunit B [Pseudomonas tolaasii NCPPB 2192]
 gi|11078779|dbj|BAB17394.1| DNA gyrase subunit B [Pseudomonas tolaasii]
 gi|11078829|dbj|BAB17419.1| DNA gyrase subunit B [Pseudomonas tolaasii]
          Length = 296

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 95/308 (30%), Positives = 149/308 (48%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P  P++         GT+I F+ 
Sbjct: 1   GGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGD-SETTGTQIHFKA 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SSETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++         + G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|11078835|dbj|BAB17422.1| DNA gyrase subunit B [Pseudomonas citronellolis]
          Length = 297

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 97/309 (31%), Positives = 153/309 (49%), Gaps = 17/309 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+EL +T+ R   ++ Q +  G+P  PL    +  +  GT + F+ 
Sbjct: 1   GGLHGVGVSVVNALSEELRLTIRRAGQVWEQIYRHGVPQFPLRAVGET-DGTGTEVHFKA 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGLK 
Sbjct: 60  SAETFTNIH-FSWDILAKRLRELSFLNSGVGILLRDERSGKE-------EMFKYEGGLKA 111

Query: 272 YLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
           +++    N+++++       + E+ G     VE A+ W +     I  + N I   +GGT
Sbjct: 112 FVEYLNTNKTIVNEVFHFNIQREEDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R ALTR +  Y E      K  I+   DD       I+SV + +P+F+ QTK KL
Sbjct: 169 HLAGFRSALTRHLNNYIEQEGLAKKYKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRK 446
           VS + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    RK A+  
Sbjct: 229 VSSEVKTAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDI 288

Query: 447 LRLPGKLAD 455
             LPGKLAD
Sbjct: 289 AGLPGKLAD 297


>gi|11078745|dbj|BAB17377.1| DNA gyrase subunit B [Pseudomonas syringae]
          Length = 296

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 96/308 (31%), Positives = 150/308 (48%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+ L +TV R   ++ Q +  G+P +P+       +K GT I F+P
Sbjct: 1   GGLHGVGVSVVNALSELLLLTVRRSGKVWEQTYVHGVPQAPMRTVGDT-DKTGTEIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SAETFQNIH-FSWDILAKRLRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++           G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTAVNQVFHFNVQRDDGV---GVEVALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  Y E      K  I+   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LAGFRSALTRNLNAYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|169248040|gb|ACA51803.1| DNA gyrase subunit B [Aliivibrio logei]
 gi|169248042|gb|ACA51804.1| DNA gyrase subunit B [Aliivibrio logei]
          Length = 306

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 111/315 (35%), Positives = 161/315 (51%), Gaps = 13/315 (4%)

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246
           G+P +PL       +  GT+I F P  + F +   F    L K  +  ++L+  V     
Sbjct: 1   GVPQAPLAVIG-TTDTTGTKIRFWPSDQTFANI-EFVYDILAKRLRELSFLNSGVSIRLQ 58

Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306
             +E        + + F F GG+K ++     N++ +  +IF    E+K      VE A+
Sbjct: 59  DMRE------EDKSDHFMFEGGIKAFVTHLNRNKTPVHQKIFYFDAERK-EDGIVVEVAM 111

Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363
            W +     I  Y N I   +GG H SG R ALTR +  + +      K   S   DD  
Sbjct: 112 QWNDSYQENIFCYTNNIPQRDGGAHLSGFRSALTRTLNSFMDKEGFSKKAKSSASGDDAR 171

Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
                ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +L +NP EA  +   +I
Sbjct: 172 EGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLAEFLAENPGEAKMVCSKII 231

Query: 424 ERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           + +  R   RK R    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ R
Sbjct: 232 DAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGR 291

Query: 483 NRSNQAVLPLRGKIL 497
           NR NQA+LPL+GKIL
Sbjct: 292 NRKNQAILPLKGKIL 306


>gi|6691617|dbj|BAA89367.1| topoisomerase IV subunit B [Flavobacterium psychrophilum]
          Length = 379

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 107/411 (26%), Positives = 179/411 (43%), Gaps = 46/411 (11%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  ++ S GL+GVG   VNALS    V   R N   + +FS G  L+  E   +   ++G
Sbjct: 1   SKAFKKSVGLNGVGTKAVNALSHYFRVESVRDNQQKAAEFSAGN-LTLEEDIIESTKRKG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+++F  D  IF +   +    ++KM ++  YL+  +   ++ +K             F+
Sbjct: 60  TKVSFIADEAIFKNY-KYRNEYIIKMLKNYCYLNTGLTIIYNGEK-------------FF 105

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILT 324
              GLK  L+  +    ++   I              +    +  + + E  S+ N   T
Sbjct: 106 SNNGLKDLLEENIAEEDMVYPIIHLLG------DDIEIAITHSKTQYSEEYYSFVNGQNT 159

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
            +GGTH    R ++ + IK++             + D+  S V  + V + EP F  QTK
Sbjct: 160 TQGGTHLGAFRESIVKTIKEFYN-------KPFEASDIRKSIVSAIVVRVEEPVFESQTK 212

Query: 385 TKLVSLDA-------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           TKL S D        +  V + ++   D++L +NP     LL  +++   ER      R+
Sbjct: 213 TKLGSTDMGPDLPSVRTFVNDFIKTKLDNFLHKNPETVDLLLRKILQAERERKELSGIRK 272

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAH-------GTELFIVEGDSAGGSAKQARNRSNQAVL 490
           + +  A +      KL DC  ++          + LFI EGDSA GS  ++R+ + QAV 
Sbjct: 273 LAKDRAKKSNLHNKKLRDCRAHLTDAKNARSLESTLFITEGDSASGSITKSRDVNTQAVF 332

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541
            LRGK LN      + +  N++   L  AL      +   EDLRY  ++I 
Sbjct: 333 SLRGKPLNSYGMSKKIVYENEEFNLLQAALNI----EESMEDLRYNNIVIA 379


>gi|290879066|emb|CBK39757.1| DNA gyrase B subunit [Pseudomonas sp. a399]
          Length = 341

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 108/332 (32%), Positives = 165/332 (49%), Gaps = 15/332 (4%)

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
               GT+I F+P    F +   F    L K  +  ++L+  V      ++   E      
Sbjct: 7   SETTGTQIHFKPSADTFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE------ 59

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
            E F + GGL+ +++    N++ ++         + G     VE A+ W +     +  +
Sbjct: 60  -ELFKYEGGLRAFVEYLNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCF 115

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH  G R ALTR +  Y E      K  ++   DD       I+SV + +
Sbjct: 116 TNNIPQRDGGTHLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPD 175

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F+ QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R
Sbjct: 176 PKFSSQTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAR 235

Query: 437 -EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
               RK A+    LPGKLADC +     +EL++V GDSAGGSAKQ RNR  QA+LPL+G+
Sbjct: 236 EMTRRKGALDIAGLPGKLADCQEKDPALSELYLVVGDSAGGSAKQGRNRKTQAILPLKGE 295

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           ILNV  A  +K  ++Q++       G R R +
Sbjct: 296 ILNVEKARFDKTISSQEVGTRDHRAGLRHRPR 327


>gi|6691605|dbj|BAA89361.1| topoisomerase IV subunit B [Flavobacterium psychrophilum]
          Length = 379

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 108/411 (26%), Positives = 180/411 (43%), Gaps = 46/411 (11%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  ++ S GL+GVG   VNALS    V   R N   + +FS G  L+  E   +   ++G
Sbjct: 1   SKAFKKSVGLNGVGTKAVNALSHYFRVESVRDNQQKAAEFSAGN-LTLEEDIIESTKRKG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+++F  D  IF +   +    ++KM ++  YL+  +   ++ +K             F+
Sbjct: 60  TKVSFIADEAIFKNY-KYRNEYIIKMLKNYCYLNTGLTIIYNGEK-------------FF 105

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILT 324
              GLK  L+  +    ++   I              +    +  + + E  S+ N   T
Sbjct: 106 SNNGLKDLLEENIAEEDMVYPIIHLLG------DDIEIAITHSKTQYSEEYYSFVNGQNT 159

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
            +GGTH    R ++ + IK++             + D+  S V  + V + EP F  QTK
Sbjct: 160 TQGGTHLGAFRESIVKTIKEFYN-------KPFEASDIRKSIVSAIVVRVEEPVFESQTK 212

Query: 385 TKLVSLDA-------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           TKL S D        +  V + ++   D++L +NP  A  LL  +++   ER      R+
Sbjct: 213 TKLGSTDMGPDLPSVRTFVNDFIKTKLDNFLHKNPDTADLLLRKILQAERERKELSGIRK 272

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAH-------GTELFIVEGDSAGGSAKQARNRSNQAVL 490
           + +  A +      KL DC  ++          + LFI EGDSA GS  ++R+ + QAV 
Sbjct: 273 LAKDRAKKSNLHNKKLRDCRVHLTDAKNARSLESTLFITEGDSASGSITKSRDVNTQAVF 332

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541
            LRGK LN      + +  N++   L  AL      +   EDLRY  ++I 
Sbjct: 333 SLRGKPLNSYGMSKKIVYENEEFNLLQAALNI----EESMEDLRYNNIVIA 379


>gi|209407304|emb|CAP72537.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 294

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 84/277 (30%), Positives = 137/277 (49%), Gaps = 15/277 (5%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS+EL +T+ R+  ++ Q +  G+P +PL    +  +  GT I F+
Sbjct: 1   SGGLHGVGVSVVNALSEELILTIRREGKVWEQIYRHGVPQAPLAAVGETED-SGTEIHFK 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F    L K  +  ++L+  V      ++   E       E F + GGL 
Sbjct: 60  PSAETFANIH-FSWDILAKRLRELSFLNSGVGIVLRDERNAKE-------ELFKYEGGLS 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            ++     N++ ++           G     VE A+ W +     +  + N I   +GGT
Sbjct: 112 AFVAYLNTNKTPVNEVFHFNIQRDDGV---GVEVALQWNDSFNENLLCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KL
Sbjct: 169 HLAGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VS + +  VE  +   F  +L+++P EA  ++  +I+
Sbjct: 229 VSSEVKTAVEQEMGKHFADFLLEHPNEAKAVVGKMID 265


>gi|87044106|gb|ABD16959.1| topoisomerase IV subunit B [Xylella fastidiosa]
 gi|87044108|gb|ABD16960.1| topoisomerase IV subunit B [Xylella fastidiosa]
 gi|87044110|gb|ABD16961.1| topoisomerase IV subunit B [Xylella fastidiosa]
 gi|87044112|gb|ABD16962.1| topoisomerase IV subunit B [Xylella fastidiosa]
 gi|87044114|gb|ABD16963.1| topoisomerase IV subunit B [Xylella fastidiosa]
 gi|87044116|gb|ABD16964.1| topoisomerase IV subunit B [Xylella fastidiosa]
 gi|87044118|gb|ABD16965.1| topoisomerase IV subunit B [Xylella fastidiosa]
 gi|87044122|gb|ABD16967.1| topoisomerase IV subunit B [Xylella fastidiosa]
 gi|87044124|gb|ABD16968.1| topoisomerase IV subunit B [Xylella fastidiosa]
 gi|87044126|gb|ABD16969.1| topoisomerase IV subunit B [Xylella fastidiosa]
 gi|87044128|gb|ABD16970.1| topoisomerase IV subunit B [Xylella fastidiosa]
 gi|87044130|gb|ABD16971.1| topoisomerase IV subunit B [Xylella fastidiosa]
 gi|87044132|gb|ABD16972.1| topoisomerase IV subunit B [Xylella fastidiosa]
 gi|87044134|gb|ABD16973.1| topoisomerase IV subunit B [Xylella fastidiosa]
 gi|87044136|gb|ABD16974.1| topoisomerase IV subunit B [Xylella fastidiosa]
 gi|87044138|gb|ABD16975.1| topoisomerase IV subunit B [Xylella fastidiosa]
 gi|87044140|gb|ABD16976.1| topoisomerase IV subunit B [Xylella fastidiosa]
 gi|87044142|gb|ABD16977.1| topoisomerase IV subunit B [Xylella fastidiosa]
 gi|87044144|gb|ABD16978.1| topoisomerase IV subunit B [Xylella fastidiosa]
 gi|87044146|gb|ABD16979.1| topoisomerase IV subunit B [Xylella fastidiosa]
 gi|87044148|gb|ABD16980.1| topoisomerase IV subunit B [Xylella fastidiosa]
 gi|87044150|gb|ABD16981.1| topoisomerase IV subunit B [Xylella fastidiosa]
 gi|87044152|gb|ABD16982.1| topoisomerase IV subunit B [Xylella fastidiosa]
 gi|87044154|gb|ABD16983.1| topoisomerase IV subunit B [Xylella fastidiosa]
 gi|87044156|gb|ABD16984.1| topoisomerase IV subunit B [Xylella fastidiosa]
 gi|87044158|gb|ABD16985.1| topoisomerase IV subunit B [Xylella fastidiosa]
 gi|87044160|gb|ABD16986.1| topoisomerase IV subunit B [Xylella fastidiosa]
 gi|87044162|gb|ABD16987.1| topoisomerase IV subunit B [Xylella fastidiosa]
 gi|87044164|gb|ABD16988.1| topoisomerase IV subunit B [Xylella fastidiosa]
 gi|87044166|gb|ABD16989.1| topoisomerase IV subunit B [Xylella fastidiosa]
 gi|87044168|gb|ABD16990.1| topoisomerase IV subunit B [Xylella fastidiosa]
 gi|87044170|gb|ABD16991.1| topoisomerase IV subunit B [Xylella fastidiosa]
 gi|87044172|gb|ABD16992.1| topoisomerase IV subunit B [Xylella fastidiosa]
 gi|87044174|gb|ABD16993.1| topoisomerase IV subunit B [Xylella fastidiosa]
 gi|87044176|gb|ABD16994.1| topoisomerase IV subunit B [Xylella fastidiosa]
 gi|87044178|gb|ABD16995.1| topoisomerase IV subunit B [Xylella fastidiosa]
 gi|87044180|gb|ABD16996.1| topoisomerase IV subunit B [Xylella fastidiosa]
 gi|87044182|gb|ABD16997.1| topoisomerase IV subunit B [Xylella fastidiosa]
          Length = 125

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 49/126 (38%), Positives = 72/126 (57%), Gaps = 2/126 (1%)

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557
           N     S  +  + ++ +L  A+GC          LRY KV+I+ DAD DG HIA+LL  
Sbjct: 1   NTWEVASGNVLASDEVHNLAIAIGCDPGKDNL-SGLRYGKVVILADADSDGLHIATLLTA 59

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISR 616
            F +    L+   H+F+  PPLFR+  G +  YA D+E K  +LE+ K+   KG++ ++R
Sbjct: 60  LFLKHFPALVAAGHVFVAMPPLFRVDVGKQVFYALDDEEKTMLLEKIKREKIKGQVSVTR 119

Query: 617 FKGLGE 622
           FKGLGE
Sbjct: 120 FKGLGE 125


>gi|116069858|gb|ABI13058.2| DNA gyrase subunit B [Cupriavidus sp. BKME-6]
          Length = 319

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 101/331 (30%), Positives = 167/331 (50%), Gaps = 33/331 (9%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG-----------------I 188
           ++Y++SGGLHGVG+S VNALS  L +TV R       +F++G                 +
Sbjct: 1   NSYKVSGGLHGVGVSCVNALSKWLRLTVRRDGQAHLLEFAQGAVQNRLVETVTGPDGQPV 60

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
            +SP++      +KRGT + F  D +IF +   F    L K  +  ++L+  V    +  
Sbjct: 61  EVSPMKVIGPT-DKRGTEVHFLADEEIFTN-VEFHYEILAKRIRELSFLNNGVHIRLADQ 118

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +         ++E+F F GG+K +++     +S +   IF   TEK G     VE ++ W
Sbjct: 119 R-------TGKEEDFAFSGGVKGFVEYINRGKSTLHPNIFYANTEKDGI---AVEVSMQW 168

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
            +    ++  + N I   +GGTH +GLR A+TR + KY E  +   K  +    DD+   
Sbjct: 169 NDGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVMNKYIEENEIAKKAKVETTGDDMREG 228

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              +LSV + EP+F+ QTK KLVS + +  VE  +      +L++ P++A  +   +++ 
Sbjct: 229 LACVLSVKVPEPKFSSQTKDKLVSSEVRLPVEELVAKALGDFLLETPVDAKIICGKIVDA 288

Query: 426 SEERLRRRKQREVNRKTA-IRKLRLPGKLAD 455
           +  R   RK RE+ R+   +  + LPGKLAD
Sbjct: 289 ARAREAARKAREMTRRKGVLDGMGLPGKLAD 319


>gi|254230345|ref|ZP_04923731.1| DNA gyrase subunit B [Vibrio sp. Ex25]
 gi|151937137|gb|EDN56009.1| DNA gyrase subunit B [Vibrio sp. Ex25]
          Length = 246

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G ++          + L+   K     +   R+KGLGEM   QL ET MD   R ++
Sbjct: 149 IKRGERT---MPVASFAEALDWLVKESMRGLSRQRYKGLGEMNPDQLWETTMDPETRRMM 205

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R  FI+E A  + ++ 
Sbjct: 206 QVTIEDAVG----ADQLFTTLMGDQVEPRRNFIEENALKVANLD 245


>gi|289600052|gb|ADD12974.1| DNA gyrase subunit beta [Aeromonas jandaei]
          Length = 307

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 105/319 (32%), Positives = 164/319 (51%), Gaps = 16/319 (5%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F    L 
Sbjct: 1   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEILA 58

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F
Sbjct: 59  KRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVF 111

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
              TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y E
Sbjct: 112 HFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYME 168

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                 K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +   
Sbjct: 169 KEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLA 228

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +
Sbjct: 229 DFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALS 288

Query: 465 ELFIVEGDSAGGSAKQARN 483
           EL+IVEGDSAGGSAKQ RN
Sbjct: 289 ELYIVEGDSAGGSAKQGRN 307


>gi|224797377|gb|ACN62718.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797379|gb|ACN62719.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797381|gb|ACN62720.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797385|gb|ACN62722.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797387|gb|ACN62723.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797389|gb|ACN62724.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797391|gb|ACN62725.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797393|gb|ACN62726.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797395|gb|ACN62727.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797399|gb|ACN62729.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797401|gb|ACN62730.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797403|gb|ACN62731.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797405|gb|ACN62732.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797407|gb|ACN62733.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797409|gb|ACN62734.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797411|gb|ACN62735.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797413|gb|ACN62736.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797415|gb|ACN62737.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797417|gb|ACN62738.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797419|gb|ACN62739.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797421|gb|ACN62740.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797423|gb|ACN62741.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797425|gb|ACN62742.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797427|gb|ACN62743.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797429|gb|ACN62744.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797431|gb|ACN62745.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797433|gb|ACN62746.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797435|gb|ACN62747.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797437|gb|ACN62748.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797439|gb|ACN62749.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
 gi|224797441|gb|ACN62750.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila hydei]
          Length = 340

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 112/352 (31%), Positives = 163/352 (46%), Gaps = 20/352 (5%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS    V + R   I+  KF  G  +     +    N+ GT ITF PD KIF 
Sbjct: 1   GSSVVNALSSVFDVKIYRDTKIWHIKFGNGGQVKQPLTEIGTTNETGTTITFLPDSKIFK 60

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F    + +  +  A+L+  VK   + ++         +  E+ F  GL+ ++    
Sbjct: 61  VI-DFSFTTISERIRESAFLNSGVKITLTDER-------ADKTVEYLFNNGLEEFITYMN 112

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLRV 336
           E +  I+  +     EK+      VE A+ +  E N  + S+ N + T EGG+H  G R 
Sbjct: 113 EGKKSITPIVMMKGLEKE----IEVEVALQYSTEFNENLLSFANNVKTSEGGSHVVGFRS 168

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392
            LT+ I  YA       ++  ++ S D       I+SV + E   ++ GQTK KL + DA
Sbjct: 169 GLTKVINDYARKEGLLKEKDKNLDSTDTREGLTAIISVKVPESLIQYEGQTKGKLGTYDA 228

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL--- 449
           +  VE  +   F  +L +N   A  ++E  +     R   RK RE  R    R       
Sbjct: 229 RAAVEIIVTKQFGFWLTENKTSAYAIIEKALLARNVREEARKAREAARNNKKRGNSDRLL 288

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            GKL           E+F+VEGDSAGGSAK  R+R  QA+LPLRGK++N   
Sbjct: 289 TGKLTPAQNRNKLNNEIFLVEGDSAGGSAKLGRDRRFQAILPLRGKVINAEK 340


>gi|289600034|gb|ADD12965.1| DNA gyrase subunit beta [Aeromonas veronii]
 gi|289600072|gb|ADD12984.1| DNA gyrase subunit beta [Aeromonas veronii]
          Length = 307

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 104/319 (32%), Positives = 164/319 (51%), Gaps = 16/319 (5%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F    L 
Sbjct: 1   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEILA 58

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F
Sbjct: 59  KRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVF 111

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
              TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +
Sbjct: 112 HFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMD 168

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                 K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +   
Sbjct: 169 KEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLA 228

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +
Sbjct: 229 DFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALS 288

Query: 465 ELFIVEGDSAGGSAKQARN 483
           EL+IVEGDSAGGSAKQ RN
Sbjct: 289 ELYIVEGDSAGGSAKQGRN 307


>gi|11078747|dbj|BAB17378.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|11078769|dbj|BAB17389.1| DNA gyrase subunit B [Pseudomonas syringae]
          Length = 296

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 95/308 (30%), Positives = 149/308 (48%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+I F+P
Sbjct: 1   GGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDTTGTQIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
               F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SADTFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++           G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTPVNQVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|289600046|gb|ADD12971.1| DNA gyrase subunit beta [Aeromonas hydrophila]
          Length = 307

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 104/319 (32%), Positives = 164/319 (51%), Gaps = 16/319 (5%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F    L 
Sbjct: 1   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEILA 58

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F
Sbjct: 59  KRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVF 111

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
              TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +
Sbjct: 112 HFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMD 168

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                 K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +   
Sbjct: 169 KEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLA 228

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +
Sbjct: 229 DFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALS 288

Query: 465 ELFIVEGDSAGGSAKQARN 483
           EL+IVEGDSAGGSAKQ RN
Sbjct: 289 ELYIVEGDSAGGSAKQGRN 307


>gi|6691607|dbj|BAA89362.1| topoisomerase IV subunit B [Flavobacterium psychrophilum]
          Length = 379

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 108/411 (26%), Positives = 179/411 (43%), Gaps = 46/411 (11%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  ++ S GL+GVG   VNALS    V   R N   + +FS G  L+  E   +   ++G
Sbjct: 1   SKAFKKSVGLNGVGTKAVNALSHYFRVESVRDNQQKAAEFSAGN-LTLEEDIIESTKRKG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+++F  D  IF +   +    ++KM ++  YL+  +   ++ +K             F+
Sbjct: 60  TKVSFIADEAIFKNY-KYRNEYIIKMLKNYCYLNTGLTIIYNGEK-------------FF 105

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILT 324
              GLK  L+  +    ++   I              +    +  + + E  S+ N   T
Sbjct: 106 SNNGLKDLLEENIAEEDMVYPIIHLLG------DDIEIAITHSKTQYSEEYYSFVNGQNT 159

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
            +GGTH    R ++ + IK++             + D+  S V  + V + EP F  QTK
Sbjct: 160 TQGGTHLGAFRESIVKTIKEFYN-------KPFEASDIRKSIVSAIVVRVEEPVFESQTK 212

Query: 385 TKLVSLDA-------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           TKL S D        +  V + +    D++L +NP  A  LL  +++   ER      R+
Sbjct: 213 TKLGSTDMGPDLPSVRTFVNDFIETKLDNFLHKNPETADLLLRKILQAERERKELSGIRK 272

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAH-------GTELFIVEGDSAGGSAKQARNRSNQAVL 490
           + +  A +      KL DC  ++          + LFI EGDSA GS  ++R+ + QAV 
Sbjct: 273 LAKDRAKKSNLHNKKLRDCRVHLTDAKNARSLESTLFITEGDSASGSITKSRDVNTQAVF 332

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541
            LRGK LN      + +  N++   L  AL      +   EDLRY  ++I 
Sbjct: 333 SLRGKPLNSYGMSKKIVYENEEFNLLQAALNI----EESMEDLRYNNIVIA 379


>gi|302122563|gb|ADK92949.1| topoisomerase IV subunit B [Geobacillus stearothermophilus]
          Length = 273

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 81/285 (28%), Positives = 137/285 (48%), Gaps = 17/285 (5%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS+ L VT+ R   ++ Q+F  G       +K    +K GT I F+PDP IF 
Sbjct: 1   GASVVNALSEWLVVTIHRDGFMYRQRFEHGGRPVTTLEKIGTTDKTGTIIHFKPDPTIFS 60

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F+   L +  +  A+L   +K     ++          +E F++  G++ ++    
Sbjct: 61  TTV-FNYETLSERLRESAFLLKGLKIELVDER-------TGMREVFHYENGIEAFVAYLN 112

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRV 336
           E + ++         E+ G     VE+A  + +   E   S+ N + T +GGTHE+G + 
Sbjct: 113 EEKDVLHPV-VYFSGEQNGI---EVEFAFQFHDGYSENVLSFVNNVRTKDGGTHEAGAKT 168

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392
           A+TR   +YA       ++  ++   D+      I+SV I E   +F GQTK KL + +A
Sbjct: 169 AMTRVFNEYARRVGLLKEKDKNLEGXDIREGLSAIVSVRIPEHLLQFEGQTKGKLGTSEA 228

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +  V+  + +   ++L +NP  +T L++  I   + R   RK RE
Sbjct: 229 RSAVDAVVSEQLTYFLQENPDVSTXLIKKAIRAYQAREAARKARE 273


>gi|87044184|gb|ABD16998.1| topoisomerase IV subunit B [Xylella fastidiosa]
 gi|87044186|gb|ABD16999.1| topoisomerase IV subunit B [Xylella fastidiosa]
 gi|87044188|gb|ABD17000.1| topoisomerase IV subunit B [Xylella fastidiosa]
          Length = 125

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/126 (38%), Positives = 72/126 (57%), Gaps = 2/126 (1%)

Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557
           N     S  +  + ++ +L  A+GC          LRY K++I+ DAD DG HIA+LL  
Sbjct: 1   NTWEVASGSVLASDEVHNLAIAIGCDPGKDNL-SGLRYGKIVILADADSDGLHIATLLTA 59

Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISR 616
            F +    L+   H+F+  PPLFR+  G +  YA D+E K  +LE+ ++   KG+I ++R
Sbjct: 60  LFLKHFPGLVAAGHVFVAMPPLFRVDVGKQVFYALDDEEKTILLEKIQREKIKGQISVTR 119

Query: 617 FKGLGE 622
           FKGLGE
Sbjct: 120 FKGLGE 125


>gi|6691609|dbj|BAA89363.1| topoisomerase IV subunit B [Flavobacterium psychrophilum]
          Length = 379

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 107/411 (26%), Positives = 179/411 (43%), Gaps = 46/411 (11%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  ++ S GL+GVG   VNALS    V   R N   + +FS G  L+  E   +   ++G
Sbjct: 1   SKAFKKSVGLNGVGTKAVNALSHYFRVESVRDNQQKAAEFSAGN-LTLEEDIIESTKRKG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+++F  D  IF +   +    ++KM ++  YL+  +   ++ +K             F+
Sbjct: 60  TKVSFIADEAIFKNY-KYRNEYIIKMLKNYCYLNTGLTIIYNGEK-------------FF 105

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILT 324
              GLK  L+  +    ++   I              +    +  + + E  S+ N   T
Sbjct: 106 SNNGLKDLLEENIAEEDMVYPIIHLLG------DDIEIAITHSKTQYSEEYYSFVNGQNT 159

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
            +GGTH    R ++ + IK++             + D+  S V  + V + EP F  QTK
Sbjct: 160 TQGGTHLGAFRESIVKTIKEFYN-------KPFEASDIRKSIVSAIVVRVEEPVFESQTK 212

Query: 385 TKLVSLDA-------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           TKL S D        +  V + ++   D++L +N   A  LL  +++   ER      R+
Sbjct: 213 TKLGSTDMGPDLPSVRTFVNDFIKTKLDNFLHKNLETADLLLRKILQAERERKELSGIRK 272

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAH-------GTELFIVEGDSAGGSAKQARNRSNQAVL 490
           + +  A +      KL DC  ++          + LFI EGDSA GS  ++R+ + QAV 
Sbjct: 273 LAKDRAKKSNLHNKKLRDCRVHLTDAKNARSLESTLFITEGDSASGSITKSRDVNTQAVF 332

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541
            LRGK LN      + +  N++   L  AL      +   EDLRY  ++I 
Sbjct: 333 SLRGKPLNSYGMSKKIVYENEEFNLLQAALNI----EESMEDLRYNNIVIA 379


>gi|4586422|dbj|BAA76398.1| topoisomerase IV subunit B [Flavobacterium psychrophilum]
          Length = 379

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 108/411 (26%), Positives = 181/411 (44%), Gaps = 46/411 (11%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  ++ S GL+GVG   VNALS    V   R N   + +FS G  L+  E   +   ++G
Sbjct: 1   SKAFKKSVGLNGVGTKAVNALSHYFRVESVRDNQQKAAEFSAGN-LTLEEDIIESTKRKG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+++F  D  IF +   +    ++KM ++  YL+  +   ++ +K             F+
Sbjct: 60  TKVSFIADEAIFKNY-KYRNEYIIKMLKNYCYLNTGLTIIYNGEK-------------FF 105

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILT 324
              GLK  L+  +    ++   I              +    +  + + E  S+ N   T
Sbjct: 106 SNNGLKDLLEENIAEEDMVYPIIHLLG------DDIEIAITHSKTQYSEEYYSFVNGQNT 159

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
            +GGTH    R ++ + IK++             + D+  S V  + V + EP F  QTK
Sbjct: 160 TQGGTHLGAFRESIVKTIKEFYN-------KPFEASDIRKSIVSAIVVRVEEPVFESQTK 212

Query: 385 TKLVSLDA-------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           TKL S D        +  V + ++   D++L +NP  A  LL  +++   ER      R+
Sbjct: 213 TKLGSTDMGPDLPSVRTFVNDFIKTKLDNFLHKNPETADLLLRKILQAERERKELSGIRK 272

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAH-------GTELFIVEGDSAGGSAKQARNRSNQAVL 490
           + +  A +      KL DC  ++          + LFI EGDSA GS  ++R+ + QAV 
Sbjct: 273 LAKDRAKKSNLHNKKLRDCRVHLTDAKNARSLESTLFITEGDSASGSITKSRDVNTQAVF 332

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541
            LRGK LN      + +  N++   L  AL      +   EDLRY+ ++I 
Sbjct: 333 SLRGKPLNSYGMSKKIVYENEEFNLLQAALNI----EESMEDLRYDNIVIA 379


>gi|40019247|emb|CAE92287.1| DNA gyrase subunit B [Streptococcus oralis]
          Length = 83

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/85 (45%), Positives = 56/85 (65%), Gaps = 2/85 (2%)

Query: 68  GTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNK 127
            TD   LHHL  E++DNA+DE ++G+ + I+V+++ +G LTV D+GRG+P   H      
Sbjct: 1   STDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTINKDGSLTVQDHGRGMPTGMH--AMGI 58

Query: 128 STLEIILTTLHAGGKFDNSTYEISG 152
            T+E+I T LHAGGKF    Y+ SG
Sbjct: 59  PTVEVIFTILHAGGKFGQGGYKTSG 83


>gi|11078889|dbj|BAB17449.1| DNA gyrase subunit B [Pseudomonas fluorescens]
 gi|11078915|dbj|BAB17462.1| DNA gyrase subunit B [Pseudomonas fluorescens]
          Length = 296

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 96/308 (31%), Positives = 150/308 (48%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P  P++         GT+I F+P
Sbjct: 1   GGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGD-SETTGTQIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SEETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++         + G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|290879062|emb|CBK39755.1| DNA gyrase B subunit [Pseudomonas sp. a393]
 gi|290879064|emb|CBK39756.1| DNA gyrase B subunit [Pseudomonas sp. a398]
          Length = 343

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 108/332 (32%), Positives = 165/332 (49%), Gaps = 15/332 (4%)

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
               GT+I F+P    F +   F    L K  +  ++L+  V      ++   E      
Sbjct: 7   SETTGTQIHFKPSADTFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE------ 59

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
            E F + GGL+ +++    N++ ++         + G     VE A+ W +     +  +
Sbjct: 60  -ELFKYEGGLRAFVEYLNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCF 115

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH  G R ALTR +  Y E      K  ++   DD       I+SV + +
Sbjct: 116 TNNIPQRDGGTHLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPD 175

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436
           P+F+ QTK KLVS + +  VE  +   F  +L++NP EA  ++  +I+ +  R   RK R
Sbjct: 176 PKFSSQTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAR 235

Query: 437 -EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
               RK A+    LPGKLADC +     +EL++V GDSAGGSAKQ RNR  QA+LPL+G+
Sbjct: 236 EMTRRKGALDIAGLPGKLADCQEKDPALSELYLVVGDSAGGSAKQGRNRKTQAILPLKGE 295

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527
           ILNV  A  +K  ++Q++       G R R +
Sbjct: 296 ILNVEKARFDKTISSQEVGTRDHRAGLRHRPR 327


>gi|11078753|dbj|BAB17381.1| DNA gyrase subunit B [Pseudomonas azotoformans]
 gi|11078761|dbj|BAB17385.1| DNA gyrase subunit B [Pseudomonas synxantha]
          Length = 296

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 96/308 (31%), Positives = 150/308 (48%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P  P++         GT+I F+P
Sbjct: 1   GGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGD-SETTGTQIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SAETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++         + G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|11078797|dbj|BAB17403.1| DNA gyrase subunit B [Pseudomonas syringae]
          Length = 296

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 95/308 (30%), Positives = 149/308 (48%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+I F+P
Sbjct: 1   GGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYIHGVPQEPMKIVGE-SDSTGTQIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
               F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SADTFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++           G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTPVNEVFHFNVQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSALTRNLNNYIEQEGLAKKYKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|11078861|dbj|BAB17435.1| DNA gyrase subunit B [Pseudomonas marginalis]
          Length = 296

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 96/308 (31%), Positives = 150/308 (48%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P  P++         GT+I F+P
Sbjct: 1   GGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQEPMKIVGD-SETTGTQIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SAETFKNIH-FSWDILAKRIRELSFLNSGVGIILKDERSAKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++         + G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|11078847|dbj|BAB17428.1| DNA gyrase subunit B [Pseudomonas marginalis]
          Length = 296

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 96/308 (31%), Positives = 149/308 (48%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P  P++         GT+I F+P
Sbjct: 1   GGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGD-SETTGTQIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SDETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++           G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTAVNQVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|11078759|dbj|BAB17384.1| DNA gyrase subunit B [Pseudomonas fluorescens]
 gi|11078813|dbj|BAB17411.1| DNA gyrase subunit B [Pseudomonas marginalis]
 gi|11078823|dbj|BAB17416.1| DNA gyrase subunit B [Pseudomonas marginalis]
          Length = 296

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 96/308 (31%), Positives = 150/308 (48%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P  P++         GT+I F+P
Sbjct: 1   GGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGD-SESTGTQIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SAETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++         + G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|11078785|dbj|BAB17397.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|11078905|dbj|BAB17457.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|11078909|dbj|BAB17459.1| DNA gyrase subunit B [Pseudomonas syringae]
          Length = 296

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 95/308 (30%), Positives = 149/308 (48%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+I F+P
Sbjct: 1   GGLHGVGVSVVNALSEILLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDTTGTQIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
               F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SADTFKNIH-FSWDILAKRIRELSFLNSGVGIMLKDERSGKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++           G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTPVNEVFHFNVQRDDGV---GVEIALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|45126717|dbj|BAD12206.1| DNA gyrase subunit B [Halomonas sp. ARD M34]
          Length = 276

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 90/275 (32%), Positives = 136/275 (49%), Gaps = 15/275 (5%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS EL +T+ RQ  +F Q +  G+P +PL    K     GTR+ FRP 
Sbjct: 1   GLHGVGVSVVNALSAELRLTIWRQGEVFEQMYHHGVPQAPLSVVGKTEK-SGTRVHFRPS 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P+ FG+   F    L K  +  ++L+  V      ++   E       E F++ GGL+ +
Sbjct: 60  PETFGN-IEFHFDILAKRLRELSFLNSGVAIRLLDERSGKE-------ELFHYEGGLRAF 111

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           +     N+++I+           G     VE A+ W E     I  Y N I   +GG H 
Sbjct: 112 VDHLNTNKTVINPVFHFNAVRDDGV---EVEVAMQWSEAFTENIFCYTNNIPQRDGGAHL 168

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G R  LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS
Sbjct: 169 AGFRAGLTRTLNNYIEAENLLKKAKVNTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVS 228

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            + +  VE  +   F  YL++ P EA  ++  +++
Sbjct: 229 SEVKTAVEQEMSRLFSDYLIEKPNEAKAIVNKMLD 263


>gi|66271240|gb|AAY43833.1| DNA gyrase subunit B [Vibrio natriegens]
          Length = 289

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 86/276 (31%), Positives = 138/276 (50%), Gaps = 13/276 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS ++ +T+ R   I +Q +  G P +PL+      +K GT I F 
Sbjct: 1   SGGLHGVGVSVVNALSKKVTLTIHRGGQIHTQTYHHGEPEAPLKVIGDT-DKTGTEIRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F    L K  +  ++L+  V       +E        + + F F GG++
Sbjct: 60  PSEETFTN-IEFHYDILAKRLRELSFLNSGVSIKLIDKRE------EDKMDHFMFEGGIQ 112

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++    N++ I  +IF    E+      TVE A+ W +     I  + N I   +GGT
Sbjct: 113 AFVEHLNTNKTPIIQKIFHFDNERDD--GITVEVAMQWNDGYQENIYCFTNNIPQRDGGT 170

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R ALTR +  + +      K   +   DD       I+SV + +P+F+ QTK KL
Sbjct: 171 HLAGFRAALTRTLNTFMDKEGFSKKAKTATSGDDAREGLTAIVSVKVPDPKFSSQTKDKL 230

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
           VS + +   E+A+ +    +L++NP EA  +   +I
Sbjct: 231 VSSEVKSAAESAMGEKLSEFLLENPSEAKIVCTKII 266


>gi|205363012|gb|ACI03947.1| DNA gyrase subunit B [Aliivibrio logei]
          Length = 323

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 112/332 (33%), Positives = 162/332 (48%), Gaps = 13/332 (3%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R+  IF Q +  G P +PL               +  D         F    L K  +  
Sbjct: 1   RKGEIFQQTYCHGEPQAPLAVVGTTDTTGTKIRFWPSDQT--FTNVEFVYEILAKRLREL 58

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V       +E        + + F F GG++ ++     N++ +  +IF   +E+
Sbjct: 59  SFLNSGVSIILQDMRE------EDKSDHFMFEGGIQAFVTHLNRNKTPVHQKIFYFDSER 112

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
           K      VE A+ W +     I  Y N I   +GG H SG R ALTR +  + +      
Sbjct: 113 K-EDGIVVEVAMQWNDSYQENIFCYTNNIPQRDGGAHLSGFRSALTRTLNSFMDKEGFSK 171

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   S   DD       ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +L +N
Sbjct: 172 KAKSSASGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLAEFLAEN 231

Query: 412 PIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P EA  +   +I+ +  R   RK R    RK A+    LPGKLADC +     +EL+IVE
Sbjct: 232 PGEAKMVCSKIIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPAQSELYIVE 291

Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
           GDSAGGSAKQ RNR NQA+LPL+GKILNV  A
Sbjct: 292 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKA 323


>gi|209407302|emb|CAP72536.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 300

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 97/310 (31%), Positives = 150/310 (48%), Gaps = 16/310 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+EL +T+ R+  ++ Q +  G+P +PL    +  +  GT I F+P
Sbjct: 3   GGLHGVGVSVVNALSEELLLTIRREGKVWEQLYRHGVPQAPLAAVGET-DTSGTEIHFKP 61

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL  
Sbjct: 62  SAETFQNIH-FSWDILAKRLRELSFLNSGVGIVLRDERSAKE-------ELFKYEGGLSA 113

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++     N++ ++           G     VE A+ W +     I  + N I   +GGTH
Sbjct: 114 FVSYLNTNKTAVNQVFHFNVQRDDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGTH 170

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  Y E      K  IS   DD       I+SV + +P+F+ QTK KLV
Sbjct: 171 LAGFRSALTRNLNAYIEQEGLAKKHKISTTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 230

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L+++P EA  ++  +I+        R+ +    RK A+   
Sbjct: 231 SSEVKTAVEQEMGKYFADFLLEHPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIA 290

Query: 448 RLPGKLADCS 457
            LPGKLAD  
Sbjct: 291 GLPGKLADPP 300


>gi|66271254|gb|AAY43840.1| DNA gyrase subunit B [Vibrio sp. PIZ 9824]
          Length = 286

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 83/277 (29%), Positives = 142/277 (51%), Gaps = 13/277 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGV +SVVNALS+++ +T+ R   I +Q +  G P +PL       ++ GT+I F 
Sbjct: 1   SGGLHGVRVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F    L K  +  ++L+  V      ++E        + + F F GG++
Sbjct: 60  PSAETFSN-TEFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KSDHFMFEGGIQ 112

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++    N++ I  +IF    E++     +VE A+ W +     I  + N I   +GGT
Sbjct: 113 AFVEHLNTNKTPIIEKIFHFDFERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGT 170

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QTK KL
Sbjct: 171 HLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKL 230

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VS + +  VE+A+ +    +L++NP EA  +   +I+
Sbjct: 231 VSSEVKSAVESAMGEKLSEFLIENPAEAKMVCSKIID 267


>gi|190148844|gb|ACE63397.1| DNA gyrase B subunit [Pseudonocardia compacta]
          Length = 328

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 102/322 (31%), Positives = 163/322 (50%), Gaps = 18/322 (5%)

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
           +K +   K G+ +T+  DP IF     ++   + +  Q  A+L+  +      ++     
Sbjct: 11  RKGEATKKTGSTVTYWADPDIFETLT-YNIETIRRRLQEMAFLNKGLTITLCDERNGDSA 69

Query: 255 YGIP----------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
                         ++  F +P GL+ ++    + +  I  ++ +   E  G     VE 
Sbjct: 70  EAEEPDAEGYVAKVKEYTFCYPNGLEDFVAHLNKTKDPIHKKLVSFTGEGTGHQ---VEV 126

Query: 305 AIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDD 361
           A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++  ++  DD
Sbjct: 127 AMQWNSGYTESVYTFANTINTHEGGTHEEGFRSALTTTVNKYARDKKLLKEKDPALSGDD 186

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
           +      I+SV ++EP+F GQTKTKL + + +  V+    +    +  +NP EA  ++  
Sbjct: 187 IREGLAAIVSVKVKEPQFEGQTKTKLGNTEVKSFVQRVSNEWLADWFERNPAEARTIVNK 246

Query: 422 VIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
            ++ ++ R   RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGSAK 
Sbjct: 247 AVQSAQARAAARKARELVRRKSAGDIGGLPGKLADCRSTDPSKSEVYIVEGDSAGGSAKS 306

Query: 481 ARNRSNQAVLPLRGKILNVASA 502
            R+   QA+LP+RGKI+NV  A
Sbjct: 307 GRDSMFQAILPIRGKIINVEKA 328


>gi|116069860|gb|ABI13059.2| DNA gyrase subunit B [Cupriavidus sp. PS12]
 gi|116069862|gb|ABI13060.2| DNA gyrase subunit B [Cupriavidus sp. WBF7]
          Length = 319

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 101/331 (30%), Positives = 167/331 (50%), Gaps = 33/331 (9%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG-----------------I 188
           ++Y++SGGLHGVG+S VNALS  L +TV R       +F++G                 +
Sbjct: 1   NSYKVSGGLHGVGVSCVNALSKWLRLTVRRDGQAHLLEFAQGAVQNRLVETVTGPDGQPV 60

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
            +SP++      +KRGT + F  D +IF +   F    L K  +  ++L+  V    +  
Sbjct: 61  EVSPMKILGPT-DKRGTEVHFLADEEIFTN-VEFHYEILAKRIRELSFLNNGVHIRLADQ 118

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308
           +         ++E+F F GG+K +++     +S +   IF   TEK G     VE ++ W
Sbjct: 119 R-------TGKEEDFAFSGGVKGFVEYINRGKSTLHPNIFYANTEKDGI---AVEVSMQW 168

Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365
            +    ++  + N I   +GGTH +GLR A+TR + KY E  +   K  +    DD+   
Sbjct: 169 NDGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVMNKYIEENEIAKKAKVETTGDDMREG 228

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              +LSV + EP+F+ QTK KLVS + +  VE  +      +L++ P++A  +   +++ 
Sbjct: 229 LACVLSVKVPEPKFSSQTKDKLVSSEVRLPVEELVAKALGDFLLETPVDAKIICGKIVDA 288

Query: 426 SEERLRRRKQREVNRKTA-IRKLRLPGKLAD 455
           +  R   RK RE+ R+   +  + LPGKLAD
Sbjct: 289 ARAREAARKAREMTRRKGVLDGMGLPGKLAD 319


>gi|7025462|gb|AAF35892.1| topoisomerase II [Mytilus edulis]
          Length = 226

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 52/129 (40%), Gaps = 7/129 (5%)

Query: 548 GAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607
           G+HI  LL+ F +    +L++   +     P+ ++T+G +    +     ++   +    
Sbjct: 1   GSHIKGLLINFVHHFWPNLLKNNVVEEFITPIVKVTKGKEEKSFYSLPEFEEWKRD--TD 58

Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667
                ++  +KGLG   A + KE   D +K   +  +             + +K    K 
Sbjct: 59  NWHTYKVKYYKGLGTSTAKEAKEYFSDMDKHK-IPFKYQ-GTEDDASITLAFSK---KKI 113

Query: 668 DERFKFIQE 676
           +ER +++  
Sbjct: 114 EERKEWLTN 122


>gi|209408304|emb|CAP19837.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 294

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 90/279 (32%), Positives = 138/279 (49%), Gaps = 15/279 (5%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS+EL +T+ R+  ++ Q +  G+P +PL     V    GT I 
Sbjct: 1   QVSGGLHGVGVSVVNALSEELLLTIRREGKVWEQLYRHGVPQAPLTAVG-VTEGSGTEIH 59

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           FRP P  F +   F    L K  +  ++L+  V      ++   E       E F + GG
Sbjct: 60  FRPSPDTFQNIH-FSWDILAKRLRELSFLNSGVGIVLRDERSAKE-------ELFKYEGG 111

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           L  ++     N++ ++           G     VE A+ W +     I  + N I   +G
Sbjct: 112 LSAFVAYLNTNKTAVNQVFHFNVQRDDGV---GVEVALQWNDSFNENILCFTNNIPQRDG 168

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH +G R ALTR +  Y E      K  IS   DD       I+SV + +P+F+ QTK 
Sbjct: 169 GTHLAGFRSALTRNLNNYIEQEGLAKKHKISTTGDDAREGLTAIISVKVPDPKFSSQTKD 228

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           KLVS + +  VE  +   F  +L+++P EA  ++  +I+
Sbjct: 229 KLVSSEVKTAVEQEMGKYFGDFLLEHPNEAKAVVGKMID 267


>gi|224797375|gb|ACN62717.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila melanogaster]
          Length = 340

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 112/352 (31%), Positives = 163/352 (46%), Gaps = 20/352 (5%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G SVVNALS    V + R   I+  KF  G  +     +    N+ GT ITF PD KIF 
Sbjct: 1   GSSVVNALSSVFDVKIYRDTKIWHIKFGNGGQVKQPLTEIGTTNETGTTITFLPDSKIFK 60

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F    + +  +  A+L+  VK   + ++         +  E+ F  GL+ ++    
Sbjct: 61  VI-DFSFTTISERIRESAFLNSGVKITLTDER-------ADKTVEYLFNNGLEEFITYMN 112

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLRV 336
           E +  I+  +     EK+      VE A+ +  E N  + S+ N + T EGG+H  G R 
Sbjct: 113 EGKKSITPIVMMKGLEKE----IEVEVALQYSTEFNENLLSFANNVKTSEGGSHVVGFRG 168

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392
            LT+ I  YA       ++  ++ S D       I+SV + E   ++ GQTK KL + DA
Sbjct: 169 GLTKVINDYARKEGLLKEKDKNLDSTDTREGLTAIISVKVPESLIQYEGQTKGKLGTYDA 228

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL--- 449
           +  VE  +   F  +L +N   A  ++E  +     R   RK RE  R    R       
Sbjct: 229 RAAVEIIVTKQFGFWLTENKTSAYAIIEKALLARNVREEARKAREAARNNKKRGNSDRLL 288

Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
            GKL           E+F+VEGDSAGGSAK  R+R  QA+LPLRGK++N   
Sbjct: 289 TGKLTPAQNRNKLNNEIFLVEGDSAGGSAKLGRDRRFQAILPLRGKVINAEK 340


>gi|239914549|dbj|BAH78953.1| DNA gyrase subunit B [Ralstonia solanacearum]
          Length = 315

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 86/294 (29%), Positives = 143/294 (48%), Gaps = 30/294 (10%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP---------------- 192
           ++SGGLHGVG+S VN LS  L +TV R   +   +F+RGIP +                 
Sbjct: 1   KVSGGLHGVGVSCVNGLSKWLKLTVRRDGRVHHMEFARGIPQNRLLEPAEAPDGKMVEVS 60

Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252
             +     +KRGT + F  D +IF +   +    L K  +  ++L+  V    +  +   
Sbjct: 61  PLRMSGTTDKRGTEVHFLADEEIFTN-VEYHYEILSKRIRELSFLNNGVHIKLTDQRSGK 119

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-E 311
           E       E+F F GG+K +++   +N++++   +F    EK G     VE ++ W +  
Sbjct: 120 E-------EDFAFSGGVKGFVEYINKNKTVLHPTVFNATGEKDGV---GVEVSMQWNDGF 169

Query: 312 NPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369
           N ++  + N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +
Sbjct: 170 NEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCV 229

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423
           LSV + EP+F+ QTK KLVS + +  VE  +      +L++ P +A  +   ++
Sbjct: 230 LSVKVPEPKFSSQTKDKLVSSEVRLPVEEVVAKALTDFLLETPNDAKIICGKIV 283


>gi|11078719|dbj|BAB17364.1| DNA gyrase subunit B [Pseudomonas balearica]
          Length = 296

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 97/308 (31%), Positives = 150/308 (48%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+EL +T+ R+  ++ Q +  G+P +PL    +     GT I F+P
Sbjct: 1   GGLHGVGVSVVNALSEELILTIRREGKVWEQIYRHGVPQAPLTAMGETEG-TGTEIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL  
Sbjct: 60  SAETFKNIH-FSWDILAKRLRELSFLNSGVGILLRDERTAKE-------ELFKYEGGLSA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++     N+S I+         + G     VE A+ W +     I  + N I   +GGTH
Sbjct: 112 FVSYLNTNKSAINQVFHFNVQREDGV---GVEIALQWNDSFNENILCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LAGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L+++P EA  ++  +I+        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKHFADFLLEHPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|164456627|dbj|BAF97806.1| gyrase B subunit [Photobacterium profundum]
          Length = 268

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 84/278 (30%), Positives = 142/278 (51%), Gaps = 14/278 (5%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS++L +T+ R   I +Q +  G+P +P+ +   V    GT + F P  +
Sbjct: 1   HGVGVSVVNALSEKLELTIFRHGKIHNQIYRHGVPEAPMAETG-VIEGTGTELRFWPSHE 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
            F +   F    L K  +  ++L+  V      ++E        +++ F + GG+K ++ 
Sbjct: 60  TFTNTL-FHYDILAKRLRELSFLNSGVSIKLIDERED------GKQDHFVYEGGIKAFID 112

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               N++ I+ E F    E++     TVE A+ W +     I  + N I   +GGTH +G
Sbjct: 113 YLNVNKTPINKEAFHFSVERED--GITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAG 170

Query: 334 LRVALTRGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
            R ALTR +  Y E     +  ++ +   DD       ++SV + +P+F+ QTK KLVS 
Sbjct: 171 FRGALTRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSS 230

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           + +  VE A+ +    YL++NP EA  ++  +I+ S  
Sbjct: 231 EVKSAVEQAMGEKLAEYLLENPKEAATVVTKIIDASRA 268


>gi|289600024|gb|ADD12960.1| DNA gyrase subunit beta [Aeromonas allosaccharophila]
 gi|289600026|gb|ADD12961.1| DNA gyrase subunit beta [Aeromonas sp. MM.1.1a]
 gi|289600064|gb|ADD12980.1| DNA gyrase subunit beta [Aeromonas sp. MM.2.0]
 gi|289600066|gb|ADD12981.1| DNA gyrase subunit beta [Aeromonas media]
 gi|289600068|gb|ADD12982.1| DNA gyrase subunit beta [Aeromonas sp. MM.2.5]
 gi|289600074|gb|ADD12985.1| DNA gyrase subunit beta [Aeromonas media]
          Length = 307

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 103/319 (32%), Positives = 164/319 (51%), Gaps = 16/319 (5%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   +    L 
Sbjct: 1   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFTDTL-YHYEILA 58

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F
Sbjct: 59  KRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVF 111

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
              TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +
Sbjct: 112 HFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMD 168

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                 K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +   
Sbjct: 169 KEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLA 228

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +
Sbjct: 229 DFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALS 288

Query: 465 ELFIVEGDSAGGSAKQARN 483
           EL+IVEGDSAGGSAKQ RN
Sbjct: 289 ELYIVEGDSAGGSAKQGRN 307


>gi|6691619|dbj|BAA89368.1| topoisomerase IV subunit B [Flavobacterium psychrophilum]
          Length = 379

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 108/411 (26%), Positives = 179/411 (43%), Gaps = 46/411 (11%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +   + S GL+GVG   VNALS    V   R N   + +FS G  L+  E   +   ++G
Sbjct: 1   SKALKKSVGLNGVGTKAVNALSHYFRVESVRDNQQKAAEFSAGN-LTLEEDIIESTKRKG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+++F  D  IF +   +    ++KM ++  YL+  +   ++ +K             F+
Sbjct: 60  TKVSFIADEAIFKNY-KYRNEYIIKMLKNYCYLNTGLTIIYNGEK-------------FF 105

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILT 324
              GLK  L+  +    ++   I              +    +  + + E  S+ N   T
Sbjct: 106 SNNGLKDLLEENIAEEDMVYPIIHLLG------DDIEIAITHSKTQYSEEYYSFVNGQNT 159

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
            +GGTH    R ++ + IK++             + D+  S V  + V + EP F  QTK
Sbjct: 160 TQGGTHLGAFRESIVKTIKEFYN-------KPFEASDIRKSIVSAIVVRVEEPVFESQTK 212

Query: 385 TKLVSLDA-------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           TKL S D        +  V + ++   D++L +NP  A  LL  +++   ER      R+
Sbjct: 213 TKLGSTDMGPDLPSVRTFVNDFIKTKLDNFLHKNPETADLLLRKILQAERERKELSGIRK 272

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAH-------GTELFIVEGDSAGGSAKQARNRSNQAVL 490
           + +  A +      KL DC  ++          + LFI EGDSA GS  ++R+ + QAV 
Sbjct: 273 LAKDRAKKSNLHNKKLRDCRVHLTDAKNARSLESTLFITEGDSASGSITKSRDVNTQAVF 332

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541
            LRGK LN      + +  N++   L  AL      +   EDLRY  ++I 
Sbjct: 333 SLRGKPLNSYGMSKKIVYENEEFNLLQAALNI----EESMEDLRYNNIVIA 379


>gi|209408308|emb|CAP19839.1| DNA gyrase subunit B [Pseudomonas balearica]
          Length = 294

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 88/279 (31%), Positives = 140/279 (50%), Gaps = 16/279 (5%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS+EL +T+ R+  ++ Q +  G+P +PL    +     GT I F
Sbjct: 1   VSGGLHGVGVSVVNALSEELILTIRREGKVWEQIYRHGVPQAPLTAMGETEG-TGTEIHF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +P  + F +   F    L K  +  ++L+  V      ++   E       E F + GGL
Sbjct: 60  KPSAETFKNIH-FSWDILAKRLRELSFLNSGVGILLRDERTAKE-------ELFKYEGGL 111

Query: 270 KTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
             ++     N+S I+       + E+ G     VE A+ W +     I  + N I   +G
Sbjct: 112 SAFVSYLNTNKSAINQVFHFNVQREEDGV---GVEIALQWNDSFNENILCFTNNIPQRDG 168

Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH +G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK 
Sbjct: 169 GTHLAGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKD 228

Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           KLVS + +  VE  +   F  +L+++P EA  ++  +I+
Sbjct: 229 KLVSSEVKTAVEQEMGKHFADFLLEHPNEAKAVVGKMID 267


>gi|87044120|gb|ABD16966.1| topoisomerase IV subunit B [Xylella fastidiosa]
          Length = 125

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/125 (38%), Positives = 71/125 (56%), Gaps = 2/125 (1%)

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
                S  +  + ++ +L  A+GC          LRY KV+I+ DAD DG HIA+LL   
Sbjct: 2   TWEVASGNVLASDEVHNLAIAIGCDPGKDNL-SGLRYGKVVILADADSDGLHIATLLTAL 60

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRF 617
           F +    L+   H+F+  PPLFR+  G +  YA D+E K  +LE+ K+   KG++ ++RF
Sbjct: 61  FLKHFPALVAAGHVFVAMPPLFRVDVGKQVFYALDDEEKTMLLEKIKREKIKGQVSVTRF 120

Query: 618 KGLGE 622
           KGLGE
Sbjct: 121 KGLGE 125


>gi|262527738|gb|ACY69086.1| DNA gyrase [Mycobacterium tuberculosis]
          Length = 158

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 74/158 (46%), Positives = 102/158 (64%), Gaps = 1/158 (0%)

Query: 423 IERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
           +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGGSAK  
Sbjct: 1   VSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSG 60

Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541
           R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY K+++M
Sbjct: 61  RDSMFQAILPLRGKIINVEKARIDRVLKNPEVQAIITALGTGIHDEFDIGKLRYHKIVLM 120

Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579
            DADVDG HI++LLLT  ++ M  LIE  H+FL  PPL
Sbjct: 121 ADADVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPL 158


>gi|11078815|dbj|BAB17412.1| DNA gyrase subunit B [Pseudomonas marginalis]
 gi|11078819|dbj|BAB17414.1| DNA gyrase subunit B [Pseudomonas marginalis]
 gi|11078871|dbj|BAB17440.1| DNA gyrase subunit B [Pseudomonas marginalis]
 gi|11078873|dbj|BAB17441.1| DNA gyrase subunit B [Pseudomonas marginalis]
 gi|11078875|dbj|BAB17442.1| DNA gyrase subunit B [Pseudomonas marginalis]
          Length = 296

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 96/308 (31%), Positives = 149/308 (48%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P  P++         GT+I F+P
Sbjct: 1   GGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGD-SETTGTQIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
               F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SADTFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++         + G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|164456623|dbj|BAF97804.1| gyrase B subunit [Photobacterium lipolyticum]
          Length = 253

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 79/259 (30%), Positives = 137/259 (52%), Gaps = 13/259 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +++Y++SGGLHGVG+SVVNALS+++ +T+ R   I  Q +  G+P +PL    +  +K G
Sbjct: 1   DNSYKVSGGLHGVGVSVVNALSEKVELTINRHGYIHHQIYHHGVPDAPLAVIGET-DKTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           TRI F P    F +   F    L K  +  ++L+  V      ++E        +++ F 
Sbjct: 60  TRIRFWPSEDTFTNVV-FHYEILAKRLRELSFLNSGVSIRLIDERE------EGKQDHFM 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG++ +++    N++ I S++F    E++      VE A+ W +     I  + N I 
Sbjct: 113 YEGGIRAFVEHLNRNKTPIHSKVFHFDFERED--GIAVEVAMQWNDGFQENIYCFTNNIP 170

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GG+H +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ 
Sbjct: 171 QRDGGSHLAGFRGALTRTLNTFMDKEGYSKKAKTATSGDDAREGLTAVVSVKVPDPKFSS 230

Query: 382 QTKTKLVSLDAQRTVENAL 400
           QTK KLVS + +  VE+A+
Sbjct: 231 QTKDKLVSSEVKPAVESAM 249


>gi|6691599|dbj|BAA89358.1| topoisomerase IV subunit B [Flavobacterium psychrophilum]
          Length = 379

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 108/411 (26%), Positives = 180/411 (43%), Gaps = 46/411 (11%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  ++ S GL+GVG   VNALS    V   R N   + +FS G  L+  E   +   ++G
Sbjct: 1   SKAFKKSVGLNGVGTKAVNALSHYFRVESVRDNQQKAAEFSAGN-LTLEEDIIESTKRKG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+++F  D  IF +   +    ++KM ++  YL+  +   ++ +K             F+
Sbjct: 60  TKVSFIADEAIFKNY-KYRNEYIIKMLKNYCYLNTGLTIIYNGEK-------------FF 105

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILT 324
              GLK  L+  +    ++   I              +    +  + + E  S+ N   T
Sbjct: 106 SNNGLKDLLEENIAEEDMVYPIIHLLG------DDIEIAITHSKTQYSEEYYSFANGQNT 159

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
            +GGTH    R ++ + IK++             + D+  S V  + V + EP F  QTK
Sbjct: 160 TQGGTHLGAFRESIVKTIKEFYN-------KPFEASDIRKSIVSAIVVRVEEPVFESQTK 212

Query: 385 TKLVSLDA-------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           TKL S D        +  V + ++   D++L +NP  A  LL  +++   ER      R+
Sbjct: 213 TKLGSTDMGPDLPSVRTFVNDFIKTKLDNFLHKNPETADLLLRKILQAERERKELSGIRK 272

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAH-------GTELFIVEGDSAGGSAKQARNRSNQAVL 490
           + +  A +      KL DC  ++          + LFI EGDSA GS  ++R+ + QAV 
Sbjct: 273 LAKDRAKKYNLHNKKLRDCRVHLTDAKNARSLESTLFITEGDSASGSITKSRDVNTQAVF 332

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541
            LRGK LN      + +  N++   L  AL      +   EDLRY  ++I 
Sbjct: 333 SLRGKPLNSYGMSKKIVYENEEFNLLQAALNI----EESMEDLRYNNIVIA 379


>gi|11078741|dbj|BAB17375.1| DNA gyrase subunit B [Pseudomonas marginata]
 gi|11078743|dbj|BAB17376.1| DNA gyrase subunit B [Pseudomonas marginalis]
 gi|11078817|dbj|BAB17413.1| DNA gyrase subunit B [Pseudomonas marginalis]
 gi|11078827|dbj|BAB17418.1| DNA gyrase subunit B [Pseudomonas marginalis]
 gi|11078831|dbj|BAB17420.1| DNA gyrase subunit B [Pseudomonas fluorescens]
          Length = 296

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 96/308 (31%), Positives = 149/308 (48%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P  P++         GT+I F+P
Sbjct: 1   GGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGD-SESTGTQIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
               F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SADTFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++         + G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|209408294|emb|CAP19832.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 293

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 86/278 (30%), Positives = 139/278 (50%), Gaps = 15/278 (5%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS+EL +T+ R+  ++ Q +  G+P +PL    +  +  GT+I F
Sbjct: 1   VSGGLHGVGVSVVNALSEELMLTIRREGKVWEQLYRHGVPQAPLAPVGET-DTSGTQIHF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +P  + F +   F    L K  +  ++L+  V      ++   E       E F + GGL
Sbjct: 60  KPSSETFQNIH-FSWDILAKRLRELSFLNSGVGIVLRDERTAKE-------ELFKYEGGL 111

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
             ++     N++ ++           G     VE A+ W +     I  + N I   +GG
Sbjct: 112 SAFVAYLNTNKTPVNEVFHFNVQRDDGV---GVEVALQWNDSFNENILCFTNNIPQRDGG 168

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  Y E      K  I+   DD       I+SV + +P+F+ QTK K
Sbjct: 169 THLAGFRSALTRNLNSYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDK 228

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           LVS + +  VE  +   F  +L+++P EA  ++  +I+
Sbjct: 229 LVSSEVKTAVEQEMGKYFGDFLLEHPGEAKAVVGKMID 266


>gi|209408292|emb|CAP19831.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 292

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 86/278 (30%), Positives = 139/278 (50%), Gaps = 15/278 (5%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS+EL +T+ R+  ++ Q +  G+P +PL    +  +  GT+I F
Sbjct: 1   VSGGLHGVGVSVVNALSEELMLTIRREGKVWEQLYRHGVPQAPLAPVGET-DTSGTQIHF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +P  + F +   F    L K  +  ++L+  V      ++   E       E F + GGL
Sbjct: 60  KPSSETFQNIH-FSWDILAKRLRELSFLNSGVGIVLRDERTAKE-------ELFKYEGGL 111

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
             ++     N++ ++           G     VE A+ W +     I  + N I   +GG
Sbjct: 112 SAFVAYLNTNKTPVNEVFHFNVQRDDGV---GVEVALQWNDSFNENILCFTNNIPQRDGG 168

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  Y E      K  I+   DD       I+SV + +P+F+ QTK K
Sbjct: 169 THLAGFRSALTRNLNSYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDK 228

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           LVS + +  VE  +   F  +L+++P EA  ++  +I+
Sbjct: 229 LVSSEVKTAVEQEMGKYFGDFLLEHPGEAKAVVGKMID 266


>gi|209407300|emb|CAP72535.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 296

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 87/278 (31%), Positives = 140/278 (50%), Gaps = 15/278 (5%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS+EL +T+ R+  ++ Q +  G+P +PL    +  +  GT+I F
Sbjct: 1   VSGGLHGVGVSVVNALSEELMLTIRREGKVWEQLYRHGVPQAPLSPVGET-DTSGTQIHF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
           +P  + F +   F    L K  +  ++L+  V      ++   E       E F + GGL
Sbjct: 60  KPSAQTFQNIH-FSWDILAKRLRELSFLNSGVGIVLRDERTAKE-------ELFKYEGGL 111

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
             ++     N++ ++         + G     VE A+ W +     I  + N I   +GG
Sbjct: 112 SAFVAYLNTNKTPVNQVFHFDMQREDGV---GVEVALQWNDSFNENILCFTNNIPQRDGG 168

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  Y E      K  I+   DD       I+SV + +P+F+ QTK K
Sbjct: 169 THLAGFRSALTRNLNSYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDK 228

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           LVS + +  VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 LVSSEVKTAVEQEMGKHFSDFLLENPGEARAVVGKMID 266


>gi|289600058|gb|ADD12977.1| DNA gyrase subunit beta [Aeromonas veronii]
          Length = 307

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 104/319 (32%), Positives = 164/319 (51%), Gaps = 16/319 (5%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
           L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F    L 
Sbjct: 1   LLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSG-TGTEVRFWPSPAIFSDTL-FHYEILA 58

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F
Sbjct: 59  KRLRELSFLNSGVSIRLQDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVF 111

Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
              TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +
Sbjct: 112 HFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMD 168

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405
                 K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +   
Sbjct: 169 KEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLA 228

Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGT 464
            +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +
Sbjct: 229 DFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALS 288

Query: 465 ELFIVEGDSAGGSAKQARN 483
           EL+IVEGDSAGGSAKQ RN
Sbjct: 289 ELYIVEGDSAGGSAKQGRN 307


>gi|11078885|dbj|BAB17447.1| DNA gyrase subunit B [Pseudomonas fluorescens]
          Length = 296

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 96/308 (31%), Positives = 150/308 (48%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS EL +TV R   I+ Q +  G+P  P++   +     GT+I F+P
Sbjct: 1   GGLHGVGVSVVNALSKELVLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SETTGTQIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SAETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++         + G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|301063849|ref|ZP_07204333.1| DNA gyrase, B subunit, C-terminal domain protein [delta
           proteobacterium NaphS2]
 gi|300442052|gb|EFK06333.1| DNA gyrase, B subunit, C-terminal domain protein [delta
           proteobacterium NaphS2]
          Length = 105

 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 8/96 (8%)

Query: 594 EEHK----QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDL 649
           E+ K    +  L E    GK  + I R+KGLGEM   QL  T MD  KR LL+V++   +
Sbjct: 13  EKEKIEDPRAFLNELMDKGKRGLTIQRYKGLGEMNPDQLWTTTMDPEKRVLLQVKVEDAV 72

Query: 650 NSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
               +  +    LMG K + R +FIQ  A  + ++ 
Sbjct: 73  ----EADNIFTILMGDKVEPRREFIQNNAMEVTELD 104


>gi|281332042|emb|CAZ39995.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 253

 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 78/263 (29%), Positives = 135/263 (51%), Gaps = 13/263 (4%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS +L + + +    + Q+++ G  L PL++       RGT + F P
Sbjct: 1   GGLHGVGVSVVNALSQKLVLDIYQGGFHYQQEYADGAALHPLKQVGPSTK-RGTTLRFWP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             K F D   F    L +  +  ++L+  VK     ++          +++F++ GG+++
Sbjct: 60  SVKAFHDNVEFHYDILARRLRELSFLNSGVKIVLVDERGD------GRRDDFHYEGGIRS 113

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++   + ++ +   + +   E  G    TVE A+ W +     +  + N I   +GGTH
Sbjct: 114 FVEHLAQLKTPLHPNVISVTGESNGI---TVEVALQWTDSYQETMYCFTNNIPQKDGGTH 170

Query: 331 ESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  Y E     +   I++  DD+    + +LSV + +P F+ QTK KLV
Sbjct: 171 LAGFRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLV 230

Query: 389 SLDAQRTVENALRDPFDHYLVQN 411
           S D +  VE+A     + +L +N
Sbjct: 231 SSDVRPAVESAFGQRLEEFLQEN 253


>gi|11078887|dbj|BAB17448.1| DNA gyrase subunit B [Pseudomonas fluorescens]
          Length = 296

 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 96/308 (31%), Positives = 150/308 (48%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +     GT+I FRP
Sbjct: 1   GGLHGVGVSVVNALSELLVLTVRRSGKIWEQTYVHGVPQEPMKVVGE-SETTGTQIHFRP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SDETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++         + G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTPVNQVFHFNVQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|45126709|dbj|BAD12202.1| DNA gyrase subunit B [Halomonas sp. TNB I24]
          Length = 276

 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 90/275 (32%), Positives = 136/275 (49%), Gaps = 15/275 (5%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS EL +T+ RQ  +F Q +  G+P +PL    K     GTR+ FRP 
Sbjct: 1   GLHGVGVSVVNALSAELRLTIWRQGEVFEQMYHHGVPQAPLSVVGKTEK-SGTRVHFRPS 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P+ FG+   F    L K  +  ++L+  V      ++   E       E F++ GGL+ +
Sbjct: 60  PETFGN-IEFHFDILAKRLRELSFLNSGVAIRLLDERSGKE-------ELFHYEGGLRAF 111

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           +     N+++I+           G     VE A+ W E     I  Y N I   +GG H 
Sbjct: 112 VDHLNTNKAVINPVFHFNAVRDDGV---EVEVAMQWSEAFTENIFCYTNNIPQRDGGAHL 168

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G R  LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS
Sbjct: 169 AGFRAGLTRTLNNYIEAENLLKKAKVNTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVS 228

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            + +  VE  +   F  YL++ P EA  ++  +++
Sbjct: 229 SEVKTAVEQEMSRLFSDYLIEKPNEAKAIVNKMLD 263


>gi|11078803|dbj|BAB17406.1| DNA gyrase subunit B [Pseudomonas cichorii]
          Length = 296

 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 94/308 (30%), Positives = 150/308 (48%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+I F+P
Sbjct: 1   GGLHGVGVSVVNALSEVLQLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDTTGTQIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SAETFKNIH-FSWDILAKRIRELSFLNSGVGIFLKDERSGKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++           G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTAVNQVFHFNVQRDDGV---GVEIALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LDGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +++        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFSDFLLENPNEAKAVVGKMLDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|11078729|dbj|BAB17369.1| DNA gyrase subunit B [Marinobacterium stanieri]
          Length = 296

 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 95/308 (30%), Positives = 153/308 (49%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS +L +T+ R   +  Q +  G+P  PL+   +  +  GT + F+P
Sbjct: 1   GGLHGVGVSVVNALSSDLKLTIRRAGQVHEQIYHHGVPEEPLKIVGET-DLTGTIVRFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V+     ++   E       E F + GGL  
Sbjct: 60  SEETFTN-IQFQYDILAKRLRELSFLNSGVRIRLKDERSGRE-------EVFEYEGGLAA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTH 330
           +++   +N+S ++         + G     VE ++ W +   E    + N I   +GGTH
Sbjct: 112 FVEFLNQNKSPVNKIFHFNAMHENGV---GVEVSMQWNDSFQESLHCFANNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            SG R ALTR +  Y E  Q  +   +S   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LSGFRTALTRCLNNYIESEQLNKTGKVSTSGDDSREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +    + YL++NP +A  +++ +I+        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQMMGQFLNEYLLENPQDAKAVVQKMIDAARAREAARKAREMTRRKGALDVA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|110084492|gb|ABG49403.1| DNA gyrase subunit beta [Aeromonas jandaei]
          Length = 305

 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 103/317 (32%), Positives = 163/317 (51%), Gaps = 16/317 (5%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F    L K 
Sbjct: 1   LTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEILAKR 58

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F  
Sbjct: 59  LRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHF 111

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +  
Sbjct: 112 TTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKE 168

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +
Sbjct: 169 DYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADF 228

Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTEL 466
           L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL
Sbjct: 229 LLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSEL 288

Query: 467 FIVEGDSAGGSAKQARN 483
           +IVEGDSAGGSAKQ RN
Sbjct: 289 YIVEGDSAGGSAKQGRN 305


>gi|11078737|dbj|BAB17373.1| DNA gyrase subunit B [Pseudomonas marginalis]
 gi|11078851|dbj|BAB17430.1| DNA gyrase subunit B [Pseudomonas corrugata]
 gi|11078859|dbj|BAB17434.1| DNA gyrase subunit B [Pseudomonas corrugata]
 gi|11078863|dbj|BAB17436.1| DNA gyrase subunit B [Pseudomonas corrugata]
          Length = 296

 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 95/308 (30%), Positives = 149/308 (48%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P +P+          GT+I F+ 
Sbjct: 1   GGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGD-SETTGTQIHFKA 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SSETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++         + G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|62000042|emb|CAI72600.1| DNA gyrase subunit B [Pseudomonas sp. OX1]
          Length = 296

 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 95/308 (30%), Positives = 148/308 (48%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P +P+          GT+I F+ 
Sbjct: 1   GGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGD-SETTGTQIHFKA 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SSETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++           G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTAVNQVFHFNVQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|11078801|dbj|BAB17405.1| DNA gyrase subunit B [Pseudomonas cichorii]
 gi|11078907|dbj|BAB17458.1| DNA gyrase subunit B [Pseudomonas syringae]
          Length = 296

 Score =  138 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 94/308 (30%), Positives = 150/308 (48%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+I F+P
Sbjct: 1   GGLHGVGVSVVNALSEVLQLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDTTGTQIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SAETFKNIH-FSWDILAKRIRELSFLNSGVGIFLKDERSGKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++           G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTAVNQVFHFNVQRDDGV---GVEIALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +++        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFSDFLLENPNEAKAVVGKMLDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|11078725|dbj|BAB17367.1| DNA gyrase subunit B [Pseudomonas pseudoalcaligenes]
          Length = 296

 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 96/308 (31%), Positives = 151/308 (49%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS EL +T+ R   I+ Q +  G+P +PL       +  GT+I F+P
Sbjct: 1   GGLHGVGVSVVNALSKELVLTIRRSGKIWEQTYVHGVPQAPLTAVGDT-DGTGTQIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++         ++E F + GGLK 
Sbjct: 60  SEETFANIH-FSWDILAKRLRELSFLNSGVGILLRDER-------TGKEELFKYEGGLKA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N+++++         + G     VE A+ W +     I  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTVVNQVFHFSVQREDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  Y E     +        DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LAGFRSALTRHLNNYIEAEGLAKKFKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|11078723|dbj|BAB17366.1| DNA gyrase subunit B [Pseudomonas oleovorans]
          Length = 296

 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 96/308 (31%), Positives = 151/308 (49%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS EL +T+ R   I+ Q +  G+P +PL       +  GT+I F+P
Sbjct: 1   GGLHGVGVSVVNALSKELVLTIRRSGKIWEQTYVHGVPQAPLTAVGDT-DGTGTQIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++         ++E F + GGLK 
Sbjct: 60  SEETFANIH-FSWDILAKRLRELSFLNSGVGILLRDER-------TGKEELFKYEGGLKA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N+++++         + G     VE A+ W +     I  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTVVNQVFHFSVQREDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  Y E     +        DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LAGFRSALTRHVNNYIEAEGLAKKFKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|11078841|dbj|BAB17425.1| DNA gyrase subunit B [Pseudomonas asplenii]
 gi|11078877|dbj|BAB17443.1| DNA gyrase subunit B [Pseudomonas asplenii]
          Length = 296

 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 94/308 (30%), Positives = 150/308 (48%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P +P+          GT+I F+ 
Sbjct: 1   GGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGD-SETTGTQIHFKA 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++         ++E F + GGL+ 
Sbjct: 60  SAETFKNIH-FSWDILAKRIRELSFLNSGVGILLRDER-------TGKEEVFRYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++         + G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTTVNQVFHFNIQREDGI---GVEVALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    RK A+   
Sbjct: 229 SSEVKGAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|281332036|emb|CAZ39992.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 255

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 78/264 (29%), Positives = 136/264 (51%), Gaps = 13/264 (4%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS +L + + +    + Q+++ G  L PL++       RGT + 
Sbjct: 2   QVSGGLHGVGVSVVNALSQKLVLDIYQGGFHYQQEYADGAALHPLKQVGPSTK-RGTTLR 60

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F P  K F D   F    L +  +  ++L+  VK     ++          +++F++ GG
Sbjct: 61  FWPSVKAFHDNVEFHYDILARRLRELSFLNSGVKIVLVDERGD------GRRDDFHYEGG 114

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           ++++++   + ++ +   + +   E  G    TVE A+ W +     +  + N I   +G
Sbjct: 115 IRSFVEHLAQLKTPLHPNVISVTGESNGI---TVEVALQWTDSYQETMYCFTNNIPQKDG 171

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH +G R ALTR +  Y E     +   I++  DD+    + +LSV + +P F+ QTK 
Sbjct: 172 GTHLAGFRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKE 231

Query: 386 KLVSLDAQRTVENALRDPFDHYLV 409
           KLVS D +  VE+A     + +L 
Sbjct: 232 KLVSSDVRPAVESAFGQRLEEFLQ 255


>gi|6691601|dbj|BAA89359.1| topoisomerase IV subunit B [Flavobacterium psychrophilum]
          Length = 379

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 106/411 (25%), Positives = 178/411 (43%), Gaps = 46/411 (11%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           +  ++ S GL+GVG   VNALS    V   R N   + +FS G  L+  E   +   ++G
Sbjct: 1   SKAFKKSVGLNGVGTKAVNALSHYFRVESVRDNQQKAAEFSAGN-LTLEEDIIESTKRKG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T+++F  D  IF +   +    ++KM ++  YL+  +   ++ +K             F+
Sbjct: 60  TKVSFIADEAIFKNY-KYRNEYIIKMLKNYCYLNTGLTIIYNGEK-------------FF 105

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILT 324
              GLK  L+  +    ++   I              +    +  + + E  S+ N   T
Sbjct: 106 SNNGLKDLLEENIAEEDMVYPIIHLLG------DDIEIAITHSKTQYSEEYYSFVNGQNT 159

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
            +GGTH    R ++ + IK++             + D+  S V  + V + EP F  QTK
Sbjct: 160 TQGGTHLGAFRESIVKTIKEFYN-------KPFEASDIRKSIVSAIVVRVEEPVFESQTK 212

Query: 385 TKLVSLDA-------QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           TKL S D        +  V + ++   D++L +NP  A  LL  +++   ER       +
Sbjct: 213 TKLGSTDMGPDLPSVRTFVNDFIKTKLDNFLHKNPETADLLLRKILQAERERKELSGIGK 272

Query: 438 VNRKTAIRKLRLPGKLADCSQNIAH-------GTELFIVEGDSAGGSAKQARNRSNQAVL 490
           + +  A +      KL DC  ++          + LFI EGDSA G   ++R+ + QAV 
Sbjct: 273 LAKDRAKKSNLHNKKLRDCRVHLTDAKNARSLESTLFITEGDSASGPITKSRDVNTQAVS 332

Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541
            LRGK LN      + +  N++   L  AL      +   EDLRY  ++I 
Sbjct: 333 SLRGKPLNSYGMSKKIVYENEEFNLLQAALNI----EESMEDLRYNNIVIA 379


>gi|296187932|ref|ZP_06856324.1| DNA topoisomerase IV subunit B domain protein [Clostridium
           carboxidivorans P7]
 gi|296047058|gb|EFG86500.1| DNA topoisomerase IV subunit B domain protein [Clostridium
           carboxidivorans P7]
          Length = 139

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 55/138 (39%), Positives = 86/138 (62%), Gaps = 4/138 (2%)

Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529
           EGDSAGGSAKQAR+R  Q ++P +GKI+N      E +  ++++     A+G      Y+
Sbjct: 2   EGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKLENVLGSEELKIFNTAIGTGVLQNYK 61

Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTK-- 587
           E+DL+Y K+IIM+DADVDG HI +L +T+ Y+ M  +I   HL++  PPL+++ +  K  
Sbjct: 62  EQDLKYNKIIIMSDADVDGYHIRTLWMTYIYRYMRQIISNGHLYIALPPLYKVYKQNKNK 121

Query: 588 --SVYAHDEEHKQKILEE 603
               YA+ +E  +K   +
Sbjct: 122 EIVRYAYSDEELEKEKSK 139


>gi|209407292|emb|CAP72531.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 291

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 83/276 (30%), Positives = 137/276 (49%), Gaps = 15/276 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+EL +T+ R+  ++ Q +  G+P +PL    +  +  GT+I F+P
Sbjct: 1   GGLHGVGVSVVNALSEELVLTIRREGKVWEQIYCHGVPQAPLAAVGETED-SGTQIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL  
Sbjct: 60  SSETFQNIH-FSWDILAKRLRELSFLNSGVGIVLRDERNAKE-------ELFKYEGGLSA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++     N++ ++           G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVAYLNTNKTPVNEVFHFNVQRDDGV---GVEVALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LAGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           S + +  VE  +   F  +L+++P EA  ++  +I+
Sbjct: 229 SSEVKTAVEQEMGKHFADFLLEHPNEAKAVVGKMID 264


>gi|11078805|dbj|BAB17407.1| DNA gyrase subunit B [Pseudomonas cichorii]
          Length = 296

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 94/308 (30%), Positives = 149/308 (48%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+I F+P
Sbjct: 1   GGLHGVGVSVVNALSEVLQLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDSTGTQIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
               F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SADTFKNIH-FSWDILAKRIRELSFLNSGVGIFLKDERSGKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++           G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTAVNQVFHFNVQRDDGV---GVEVALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +++        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFSDFLLENPNEAKAVVGKMLDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|209408300|emb|CAP19835.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 287

 Score =  137 bits (344), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 85/277 (30%), Positives = 137/277 (49%), Gaps = 15/277 (5%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS+EL +T+ R   ++ Q +  G+P +PL    +  +  GT+I F+
Sbjct: 1   SGGLHGVGVSVVNALSEELMLTIRRDGKVWEQLYRHGVPQAPLAPVGET-DTSGTQIHFK 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F    L K  +  ++L+  V      ++   E       E F + GGL 
Sbjct: 60  PSSETFQNIH-FSWDILAKRLRELSFLNSGVGIVLRDERTAKE-------ELFKYEGGLS 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            ++     N++ ++           G     VE A+ W +     I  + N I   +GGT
Sbjct: 112 AFVAYLNTNKTPVNEVFHFNVQRDDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R ALTR +  Y E      K  I+   DD       I+SV + +P+F+ QTK KL
Sbjct: 169 HLAGFRSALTRNLNSYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VS + +  VE  +   F  +L+++P EA  ++  +++
Sbjct: 229 VSSEVKTAVEQEMGKYFGDFLLEHPGEAKAVVGKMMD 265


>gi|45126707|dbj|BAD12201.1| DNA gyrase subunit B [Halomonas sp. TNB I20]
 gi|45126719|dbj|BAD12207.1| DNA gyrase subunit B [Halomonas sp. NT N97]
 gi|45126721|dbj|BAD12208.1| DNA gyrase subunit B [Halomonas sp. SYM P12]
          Length = 276

 Score =  137 bits (344), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 92/275 (33%), Positives = 136/275 (49%), Gaps = 15/275 (5%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS EL +T+ RQ  +F Q +  G+P +PL    K     GTR+ FRP 
Sbjct: 1   GLHGVGVSVVNALSAELRLTIWRQGEVFEQMYRHGVPQAPLGVVGKTEK-SGTRVHFRPS 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P+ FG+   F    L K  +  ++L+  V      ++   E       E F++ GGL+ +
Sbjct: 60  PETFGN-IEFHFDILAKRLRELSFLNSGVAIRLLDERSGKE-------ELFHYEGGLRAF 111

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           +     N+S+I+           G     VE A+ W E     I  Y N I   +GG H 
Sbjct: 112 VDHLNTNKSVINPVFHFNAVRDDGV---EVEVAMQWSEAFTENIFCYTNNIPQRDGGAHL 168

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G R  LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS
Sbjct: 169 AGFRAGLTRTLNNYIEAENLLKKAKVNTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVS 228

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            + +  VE  +   F  YLV+ P EA  ++  +++
Sbjct: 229 SEVKTAVEQEMSRLFSEYLVEKPNEAKAIVNKMLD 263


>gi|11078727|dbj|BAB17368.1| DNA gyrase subunit B [Pseudomonas sp.]
          Length = 296

 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 96/308 (31%), Positives = 150/308 (48%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+EL +T+ R+  ++ Q +  G+P +PL    +     GT I F+P
Sbjct: 1   GGLHGVGVSVVNALSEELILTIRREGKVWEQIYRHGVPQAPLTAMGETEG-TGTEIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL  
Sbjct: 60  SAETFKNIH-FSWDILAKRLRELSFLNSGVGILLRDERTAKE-------ELFKYEGGLSA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++     N+S I+         + G     VE A+ W +     I  + N I   +GGTH
Sbjct: 112 FVSYLNTNKSAINQVFHFNVQREDGV---GVEIALQWNDSFNENILCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  Y E      K  ++   +D       I+SV + +P+F+ QTK KLV
Sbjct: 169 LAGFRSALTRNLNNYIEQEGLAKKHKVTTTVNDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L+++P EA  ++  +I+        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKHFADFLLEHPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|11078733|dbj|BAB17371.1| DNA gyrase subunit B [Pseudomonas syringae]
          Length = 296

 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 94/308 (30%), Positives = 150/308 (48%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+I F+P
Sbjct: 1   GGLHGVGVSVVNALSEVLQLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDSTGTQIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SAETFKNIH-FSWDILAKRIRELSFLNSGVGIFLKDERSGKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++           G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTAVNQVFHFNVQRDDGV---GVEIALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +++        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFSDFLLENPNEAKAVVGKMLDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 ALPGKLAD 296


>gi|11078749|dbj|BAB17379.1| DNA gyrase subunit B [Pseudomonas mucidolens]
          Length = 296

 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 96/308 (31%), Positives = 150/308 (48%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P +P+          GT+I F+P
Sbjct: 1   GGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQAPMTIVGD-SETTGTQIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SSETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFRYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++         + G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|209408310|emb|CAP19840.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 291

 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 86/277 (31%), Positives = 138/277 (49%), Gaps = 15/277 (5%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS+EL +T+ R+  ++ Q +  G+P +PL    +  +  GT+I F+
Sbjct: 1   SGGLHGVGVSVVNALSEELMLTIRREGKVWEQLYRHGVPQAPLAPVGET-DTSGTQIHFK 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F    L K  +  ++L+  V      ++   E       E F + GGL 
Sbjct: 60  PSSETFQNIH-FSWDILAKRLRELSFLNSGVGIVLRDERTAKE-------ELFKYEGGLS 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            ++     N++ ++           G     VE A+ W +     I  + N I   +GGT
Sbjct: 112 AFVAYLNTNKTPVNEVFHFNVQRDDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R ALTR +  Y E      K  I+   DD       I+SV + +P+F+ QTK KL
Sbjct: 169 HLAGFRSALTRNLNSYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VS + +  VE  +   F  +L+++P EA  ++  +I+
Sbjct: 229 VSSEVKTAVEQEMGKYFGDFLLEHPGEAKAVVGKMID 265


>gi|209408298|emb|CAP19834.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 290

 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 86/277 (31%), Positives = 138/277 (49%), Gaps = 15/277 (5%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS+EL +T+ R+  ++ Q +  G+P +PL    +  +  GT+I F+
Sbjct: 1   SGGLHGVGVSVVNALSEELMLTIRREGKVWEQLYRHGVPQAPLAPVGET-DTSGTQIHFK 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F    L K  +  ++L+  V      ++   E       E F + GGL 
Sbjct: 60  PSSETFQNIH-FSWDILAKRLRELSFLNSGVGIVLRDERTAKE-------ELFKYEGGLS 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            ++     N++ ++           G     VE A+ W +     I  + N I   +GGT
Sbjct: 112 AFVAYLNTNKTPVNEVFHFNVQRDDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R ALTR +  Y E      K  I+   DD       I+SV + +P+F+ QTK KL
Sbjct: 169 HLAGFRSALTRNLNSYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VS + +  VE  +   F  +L+++P EA  ++  +I+
Sbjct: 229 VSSEVKTAVEQEMGKYFGDFLLEHPGEAKAVVGKMID 265


>gi|281331986|emb|CAZ39967.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 253

 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 78/263 (29%), Positives = 135/263 (51%), Gaps = 13/263 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS +L + + +    + Q+++ G  L PL++       RGT + F
Sbjct: 1   VSGGLHGVGVSVVNALSQKLVLDIHQGGFHYQQEYADGAALHPLKQVGPSTK-RGTTLRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  K F D   F    L +  +  ++L+  VK     ++          +++F++ GG+
Sbjct: 60  WPSVKAFHDNVEFHYDILARRLRELSFLNSGVKIVLVDERGD------GRRDDFHYEGGI 113

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           +++++   + ++ +   + +   E  G    TVE A+ W +     +  + N I   +GG
Sbjct: 114 RSFVEHLAQLKTPLHPNVISVTGESNGI---TVEVALQWTDSYQETMYCFTNNIPQKDGG 170

Query: 329 THESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  Y E     +   I++  DD+    + +LSV + +P F+ QTK K
Sbjct: 171 THLAGFRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEK 230

Query: 387 LVSLDAQRTVENALRDPFDHYLV 409
           LVS D +  VE+A     + +L 
Sbjct: 231 LVSSDVRPAVESAFGQRLEEFLQ 253


>gi|190148866|gb|ACE63408.1| DNA gyrase B subunit [Pseudonocardia xinjiangensis]
          Length = 330

 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 100/323 (30%), Positives = 163/323 (50%), Gaps = 18/323 (5%)

Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
           +K +   K G+ +T+  D  IF     ++   + +  Q  A+L+  +      ++     
Sbjct: 12  RKGEPTKKTGSTVTYWADGDIFETLT-YNIETIRRRLQEMAFLNKGLTITLRDERNGDNG 70

Query: 255 YGIP----------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
                         ++  F +P GL+ ++    +++  I  ++ +   E  G     VE 
Sbjct: 71  EAEEPDAEGYVAKVKEYTFCYPNGLEDFVAHLNKSKDPIHKKLVSFTGEGTGHQ---VEV 127

Query: 305 AIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDD 361
           A+ W       + ++ NTI T EGGTHE G R ALT  + +YA   +   ++  ++  DD
Sbjct: 128 AMQWNSGYTESVYTFANTINTHEGGTHEEGFRSALTTTVNRYARDKKLLKEKDPALSGDD 187

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
           +      I+SV ++EP+F GQTKTKL + + +  V+    +    +  +NP EA  ++  
Sbjct: 188 IREGLAAIVSVKVKEPQFEGQTKTKLGNTEVKSFVQRVSNEWLADWFERNPTEARTIVNK 247

Query: 422 VIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
            ++ ++ R   RK RE V RK+A     LPGKLADC       +E++IVEGDSAGGSAK 
Sbjct: 248 AVQSAQARAAARKARELVRRKSAGDIGGLPGKLADCRSTDPSKSEVYIVEGDSAGGSAKS 307

Query: 481 ARNRSNQAVLPLRGKILNVASAG 503
            R+   QA+LP+RGKI+NV  A 
Sbjct: 308 GRDSMFQAILPIRGKIINVEKAR 330


>gi|66474607|gb|AAY46873.1| GyrB [Aeromonas sp. CCRC 13980]
          Length = 371

 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 110/381 (28%), Positives = 180/381 (47%), Gaps = 16/381 (4%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GV +S+V ALSDEL +T      ++ Q +  G P +PL+         GT + F P P I
Sbjct: 2   GVRVSLVPALSDELLLTFRLDGHVYEQIYHLGEPQAPLKLIGDSTGP-GTEVRFGPRPAI 60

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F          L K  +  ++ +  V      +++            F + GG+K +++ 
Sbjct: 61  FTPTLVHYY-ILAKRLRKVSFRNSGVSIRLRDERD-------GRVAHFCYEGGIKAFVEY 112

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             +N++ I  ++F   TE+ G     VE A+ W +     +  + N I   +GGTH  G 
Sbjct: 113 LNQNKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGF 169

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y +      K   +   DD+    + ++SV + +P+F+ QTK KLVS + 
Sbjct: 170 RTALTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEV 229

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451
           +   E A+ +    +L++NP +A  ++  +I+ +  R   RK REV R+         P 
Sbjct: 230 KTAAEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKAREVTRRKGPADITCEPR 289

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           + A+   N    +E  I+EGD   G AKQ R+R NQA+L  +G ILNV     +K+ ++Q
Sbjct: 290 QDAEFQSNNPALSERHIMEGDYNVGHAKQGRSRKNQAILSPKGMILNVEHPRFDKMISSQ 349

Query: 512 QIMDLVQALGCRTRSQYREED 532
           +   L+ AL           D
Sbjct: 350 EQGTLLPALAPSRGHHDHNPD 370


>gi|45126705|dbj|BAD12200.1| DNA gyrase subunit B [Halomonas sp. TAG C4]
          Length = 276

 Score =  136 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 87/275 (31%), Positives = 137/275 (49%), Gaps = 15/275 (5%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS+EL +T+ RQ  +F Q +  G+P +PL          GTR+ FRP 
Sbjct: 1   GLHGVGVSVVNALSEELRLTIWRQGDVFEQVYHHGVPQAPLAVVGTTEK-SGTRVHFRPS 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P+ F     F    L K  +  ++L+  V      ++   E       E F++ GGLK +
Sbjct: 60  PETFTS-IEFHYDILAKRLRELSFLNSGVAIRLMDERSGKE-------ELFHYEGGLKAF 111

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           +    +N+++++         + G     VE A+ W +     I  Y N I   +GG H 
Sbjct: 112 VDHLNQNKAVLNPVFHFNAVREDGI---EVEVAMQWNDTFTESIFCYTNNIPQRDGGAHL 168

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G R +LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS
Sbjct: 169 AGFRASLTRTLNHYIEAEGLLKKAKVNTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVS 228

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            + +  VE  +   F  YL++ P EA  ++  +++
Sbjct: 229 SEVKTAVEQEMGRLFSDYLIEKPNEAKAIVNKMLD 263


>gi|11078765|dbj|BAB17387.1| DNA gyrase subunit B [Pseudomonas stutzeri]
 gi|11078807|dbj|BAB17408.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 296

 Score =  136 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 96/308 (31%), Positives = 151/308 (49%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+EL +T+ R+  ++ Q +  G+P +PL    +  +  GT+I F+P
Sbjct: 1   GGLHGVGVSVVNALSEELMLTIRREGKVWEQLYRHGVPQAPLAPVGET-DTSGTQIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL  
Sbjct: 60  SSETFQNIH-FSWDILAKRLRELSFLNSGVGIVLRDERTAKE-------ELFKYEGGLSA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++     N++ ++           G     VE A+ W +     I  + N I   +GGTH
Sbjct: 112 FVAYLNTNKTPVNEVFHFNVQRDDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  Y E      K  I+   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LAGFRSALTRNLNSYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L+++P EA  ++  +I+        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFGDFLLEHPGEAKAVVGKMIDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|11078799|dbj|BAB17404.1| DNA gyrase subunit B [Pseudomonas cichorii]
          Length = 296

 Score =  136 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 94/308 (30%), Positives = 149/308 (48%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+I F+P
Sbjct: 1   GGLHGVGVSVVNALSEVLQLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDSTGTQIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
               F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SADTFKNIH-FSWDILAKRIRELSFLNSGVGIFLKDERSGKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++           G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTAVNQVFHFNVQRDDGV---GVEIALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +++        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFSDFLLENPNEAKAVVGKMLDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|11078883|dbj|BAB17446.1| DNA gyrase subunit B [Pseudomonas fluorescens]
 gi|11078893|dbj|BAB17451.1| DNA gyrase subunit B [Pseudomonas putida]
          Length = 296

 Score =  136 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 96/308 (31%), Positives = 149/308 (48%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P +P+          GT+I F+P
Sbjct: 1   GGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQAPMAIVGD-SETTGTQIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
               F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SADTFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++         + G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|11078897|dbj|BAB17453.1| DNA gyrase subunit B [Pseudomonas putida]
          Length = 296

 Score =  136 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 96/308 (31%), Positives = 151/308 (49%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+EL +T+ R+  ++ Q +  G+P +PL    +  +  GT+I F+P
Sbjct: 1   GGLHGVGVSVVNALSEELLLTIRREGKVWEQLYRHGVPQAPLAAVGET-DTSGTQIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL  
Sbjct: 60  SAETFQNIH-FSWDILAKRLRELSFLNSGVGIVLRDERTAKE-------ELFKYEGGLSA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++     N++ ++           G     VE A+ W +     I  + N I   +GGTH
Sbjct: 112 FVAYLNTNKTAVNQVFHFNVQRDDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  Y E      K  I+   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LAGFRSALTRNLNNYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L+++P EA  ++  +I+        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFADFLLEHPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|213421102|ref|ZP_03354168.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 136

 Score =  136 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ LE   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 51  FEQALEWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAI----AAD 106

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 107 QLFTTLMGDAVEPRRAFIEENALKAANID 135


>gi|11559431|dbj|BAB18782.1| type II DNA topoisomerase [Porphyra suborbiculata]
          Length = 382

 Score =  136 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 84/411 (20%), Positives = 136/411 (33%), Gaps = 40/411 (9%)

Query: 113 GRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVT 172
           G GIP   H K       E+I   L      D+   ++ GG +G G  + N  S    V 
Sbjct: 1   GAGIPTAMHAK-EGVYVPELIFGHLLTSSNCDDGEKKVVGGRNGYGAKLANIFSTRFVVE 59

Query: 173 VAR--QNTIFSQKFSRGIPLSPLEKKEKVRNKR--GTRITFRPD--PKIFGDKAGFDAAR 226
            A       + Q F R +    +         R   TRITF PD              A 
Sbjct: 60  TADASSGKTYKQTFKRNMMDRGVPVIRASAKARDAWTRITFEPDLAKFGMERLDADATAV 119

Query: 227 LLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSE 286
           L       A +   +    +  K                    K Y+   L +       
Sbjct: 120 LQMRVVDMAGVVPGIAVHLNGVKLKI--------------NSFKQYVDLHLADAPDAPRI 165

Query: 287 IFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYA 346
                           E  ++  +     TS+ N+I T +GGTH + +   L   I+++ 
Sbjct: 166 H--------DGSADRWEVVVSVSDGQLTQTSFVNSIATTKGGTHVNHVADQLVGRIQEHI 217

Query: 347 ELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
              + ++ + +    +       +   +  P F  QTK  L S  A    +    D    
Sbjct: 218 A--KKRKTLKVKPFQIKSQLSIYVKCLVENPAFDSQTKEMLTSRPATFGSKWVCPDRMAK 275

Query: 407 YLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS-QNIAHGTE 465
                 +  + ++E V+  +E +  +   +    K A          A+ +    +    
Sbjct: 276 -----DLIKSGVVENVLSLAESQQVKELAKTDGGKRARVTGIPKLDDANLAGTRDSAKCT 330

Query: 466 LFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           L + EGDSA   A    +   R    V PLRGK+LNV  A  ++I  N +I
Sbjct: 331 LILTEGDSAKALAISGLSVLGRDFYGVFPLRGKLLNVREATHKQIMENAEI 381


>gi|219536320|gb|ACL18065.1| DNA gyrase subunit B [Pseudomonas sp. TLC13:6-6.5cm-2G]
          Length = 284

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 86/277 (31%), Positives = 137/277 (49%), Gaps = 15/277 (5%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P  P++   +     GT+I F+
Sbjct: 1   SGGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYIHGVPKEPMKIVGE-SETTGTQIHFK 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P    F +   F    L K  +  ++L+  V      ++   E       E F + GGL+
Sbjct: 60  PSDLTFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLR 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++    N++ ++         + G     VE A+ W +     +  + N I   +GGT
Sbjct: 112 AFVEYLNTNKTPVNQVFHFNVQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H  G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KL
Sbjct: 169 HLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VS + +  VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 VSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMID 265


>gi|11078843|dbj|BAB17426.1| DNA gyrase subunit B [Pseudomonas agarici]
 gi|11078845|dbj|BAB17427.1| DNA gyrase subunit B [Pseudomonas agarici]
 gi|11078853|dbj|BAB17431.1| DNA gyrase subunit B [Pseudomonas agarici]
          Length = 296

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 94/308 (30%), Positives = 148/308 (48%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P  P+    +     GT+I F+ 
Sbjct: 1   GGLHGVGVSVVNALSELLVLTVRRSGKIWEQTYVHGVPQEPMRIVGE-SETTGTQIHFKA 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SGETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++         + G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|40019243|emb|CAE92285.1| DNA gyrase subunit B [Legionella pneumophila]
          Length = 84

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/85 (49%), Positives = 61/85 (71%), Gaps = 2/85 (2%)

Query: 68  GTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126
            TD+   LHH+  EV+DN++DE +AGY   I V++  +  +TV D+GRGIPV+ H K   
Sbjct: 1   DTDDGTGLHHMVFEVVDNSIDESLAGYCKEIFVTIHSDESITVKDDGRGIPVDIH-KEEG 59

Query: 127 KSTLEIILTTLHAGGKFDNSTYEIS 151
           KS  E+I+T LHAGGKFD+++Y++S
Sbjct: 60  KSAAEVIMTVLHAGGKFDDNSYKVS 84


>gi|11078763|dbj|BAB17386.1| DNA gyrase subunit B [Pseudomonas chlororaphis subsp. chlororaphis]
 gi|11078771|dbj|BAB17390.1| DNA gyrase subunit B [Pseudomonas chlororaphis subsp. chlororaphis]
 gi|11078773|dbj|BAB17391.1| DNA gyrase subunit B [Pseudomonas chlororaphis subsp. aureofaciens]
 gi|11078775|dbj|BAB17392.1| DNA gyrase subunit B [Pseudomonas chlororaphis subsp. chlororaphis]
 gi|11078881|dbj|BAB17445.1| DNA gyrase subunit B [Pseudomonas chlororaphis subsp. aureofaciens]
          Length = 296

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 95/308 (30%), Positives = 149/308 (48%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P +P+          GT+I F+ 
Sbjct: 1   GGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGD-SETTGTQIHFKA 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SSETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTH 330
           +++    N++ ++         + G     VE A+ W +   E    + N I   +GGTH
Sbjct: 112 FVEYLNTNKTAVNQVFHFNVQREDGI---GVEIALQWNDSFNENLQCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L++NP EA  ++  +++        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMLDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|46205568|ref|ZP_00048360.2| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), B subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 230

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/126 (39%), Positives = 81/126 (64%), Gaps = 6/126 (4%)

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMT 542
           +LPLRGKILN     ++++ ++ +I  L+ ALG         R  +  + LRY ++IIMT
Sbjct: 1   MLPLRGKILNFERVRADRMLSSAEIGTLITALGAGIGRSSTDREGFNPDKLRYHRIIIMT 60

Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILE 602
           DADVDG+HI +LLLTFF+++M ++IE+ HL++  PPL++  +G +++Y  DE   +  L 
Sbjct: 61  DADVDGSHIRTLLLTFFFRQMPEIIERGHLYIAQPPLYKAERGRRAIYLKDERALEDYLI 120

Query: 603 EFKKHG 608
           +    G
Sbjct: 121 DQGVEG 126


>gi|164456719|dbj|BAF97852.1| gyrase B subunit [Vibrio pomeroyi]
          Length = 246

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 80/256 (31%), Positives = 129/256 (50%), Gaps = 13/256 (5%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS ++ +T+ R   I +Q +  G P +PL       +K 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYHHGEPQAPLAAIGDT-DKT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT I F P    F +   F    L K  +  ++L+  V      ++E        + + F
Sbjct: 60  GTEIRFWPSEDTFSNVL-FHYDILAKRLRELSFLNSGVSIKLIDERE------EDKSDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            F GG++ ++     N++ I  +IF    E++     TVE A+ W +     I  + N I
Sbjct: 113 MFEGGIQAFVDHLNTNKTPIIQKIFHFDHERED--GITVEVAMQWNDGYQENIYCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
              +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+
Sbjct: 171 PQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPDPKFS 230

Query: 381 GQTKTKLVSLDAQRTV 396
            QTK KLVS + +  V
Sbjct: 231 SQTKDKLVSSEVKSAV 246


>gi|11078809|dbj|BAB17409.1| DNA gyrase subunit B [Pseudomonas pseudoalcaligenes]
          Length = 297

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 97/309 (31%), Positives = 153/309 (49%), Gaps = 17/309 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS EL +T+ R   I+ Q +  G+P +PL       +  GT+I F+P
Sbjct: 1   GGLHGVGVSVVNALSKELVLTIRRSGKIWEQTYVHGVPQAPLTAVGDT-DGTGTQIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++         ++E F + GGLK 
Sbjct: 60  SEETFANIH-FSWDILAKRLRELSFLNSGVGILLRDER-------TGKEELFKYEGGLKA 111

Query: 272 YLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
           +++    N+++++       + E+ G     VE A+ W +     I  + N I   +GGT
Sbjct: 112 FVEYLNTNKTVVNQVFHFSVQREEDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R ALTR +  Y E     +        DD       I+SV + +P+F+ QTK KL
Sbjct: 169 HLAGFRSALTRHLNNYIEAEGLAKKFKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRK 446
           VS + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    RK A+  
Sbjct: 229 VSSEVKTAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDI 288

Query: 447 LRLPGKLAD 455
             LPGKLAD
Sbjct: 289 AGLPGKLAD 297


>gi|296802132|gb|ADH51564.1| DNA gyrase subunit beta [Rhizobium sp. J3-A127]
          Length = 252

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 81/255 (31%), Positives = 128/255 (50%), Gaps = 12/255 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS  L + + R   I    F+ G+  +PL+       + GT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSVWLKLKIRRAGKIHEMSFTHGVADAPLKVTGDYEGRSGTE 60

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           +TF P    F     FD   L    +  A+L+  V+   +  ++         +EE  + 
Sbjct: 61  VTFLPSTDTFTK-TEFDYGTLEHRLRELAFLNSGVRILLTDRRKSDI-----RQEEMLYD 114

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTD 325
           GGL+ +++     +  +  +    + EK G    TVE A+ W +   E    + N I   
Sbjct: 115 GGLEAFVRYLDRAKKPLVDKPVAIRGEKDGI---TVEVALWWNDSYHENVLCFTNNIPQR 171

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R ALTR +  YA+ +    K  +S+  +D       +LSV + +P+F+ QT
Sbjct: 172 DGGTHMAGFRAALTRQVTSYADTSGILKKEKVSLQGEDCREGLTAVLSVKVPDPKFSSQT 231

Query: 384 KTKLVSLDAQRTVEN 398
           K KLVS + +  VEN
Sbjct: 232 KDKLVSSEVRPVVEN 246


>gi|209408286|emb|CAP19828.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 291

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 86/276 (31%), Positives = 137/276 (49%), Gaps = 15/276 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+EL +T+ R+  ++ Q +  G+P +PL    +  +  GT+I F+P
Sbjct: 1   GGLHGVGVSVVNALSEELLLTIRREGKVWEQLYRHGVPQAPLAAVGET-DTSGTQIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL  
Sbjct: 60  SAETFQNIH-FSWDILAKRLRELSFLNSGVGIVLRDERTAKE-------ELFKYEGGLSA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++     N++ ++           G     VE A+ W +     I  + N I   +GGTH
Sbjct: 112 FVAYLNTNKTAVNQVFHFNVQRDDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  Y E      K  IS   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LAGFRSALTRNLNNYIEQEGLAKKHKISTTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           S + +  VE  +   F  +L+++P EA  ++  +I+
Sbjct: 229 SSEVKTAVEQEMGKYFADFLLEHPNEAKAVVGKMID 264


>gi|213027789|ref|ZP_03342236.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 85

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 1/86 (1%)

Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622
              L++  H+++  PPL+RI  G +  YA  EE K  +LE+ K+  KGK  + RFKGLGE
Sbjct: 1   FRALVKNGHVYVALPPLYRIDLGKEVYYALTEEEKAGVLEQLKRK-KGKPNVQRFKGLGE 59

Query: 623 MLASQLKETAMDANKRTLLRVEINKD 648
           M   QL+ET +D N R L+++ I+ +
Sbjct: 60  MNPMQLRETTLDPNTRRLVQLTISDE 85


>gi|58465043|gb|AAW78424.1| DNA topoisomerase II beta subunit [Shewanella sp. HAW-EB1]
          Length = 314

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 102/325 (31%), Positives = 159/325 (48%), Gaps = 15/325 (4%)

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VV ALS +L +T+ R   ++ Q ++ G P  P++      N  GT I F P    F D  
Sbjct: 1   VVXALSHKLQLTIRRDGKLYEQFYTHGEPDEPIKAIGDATN-TGTEIRFWPSTDTFSDTL 59

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L K  +  ++L+  V      +++          E F + GG+  ++     N+
Sbjct: 60  -FHFDILAKRVRELSFLNSGVGVRLVDERDN-------RNEFFKYDGGISAFVDYLNVNK 111

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + ++ E+F    E++     TVE A+ W +     I  + N I   +GGTH +G R ALT
Sbjct: 112 TPVNKEVFHFIHERED--GITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRSALT 169

Query: 340 RGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  Y E      K   S   DD       ++SV + +P+F+ QTK KLVS + +  VE
Sbjct: 170 RNLNSYMEREGYNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAVE 229

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456
             + +    YL+++P EA  ++  +I+        R+ +    RK A+    LPGKLADC
Sbjct: 230 QTMGEQLGDYLMEHPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADC 289

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQA 481
            +     +E++IVEGDSAGGSAKQ 
Sbjct: 290 QEKDPALSEIYIVEGDSAGGSAKQG 314


>gi|186898209|gb|ACC93992.1| DNA gyrase B subunit [Acinetobacter soli]
          Length = 309

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 97/320 (30%), Positives = 153/320 (47%), Gaps = 16/320 (5%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS +L +T+ R   I  Q++  G P  PL+   +      T
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSSKLQLTIHRAGQIHEQEYQHGDPKYPLKVVGETTTTG-T 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
            + F P  + F     F    L +  +  ++L+  VK     ++   E         + +
Sbjct: 60  TVRFWPSAETFSQTI-FSVDILARRLRELSFLNAGVKIVLRDERVNFE-------HIYAY 111

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GGL  +++   E ++ ++           G     VE A+ W +     +  + N I  
Sbjct: 112 EGGLSEFVKYINEGKTHLNDIFHFTADADNGI---GVEVALQWNDSYQENVRCFTNNIPQ 168

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GGTH +G R ALTRG+  Y E      K  +S+  DD       I+SV + +P+F+ Q
Sbjct: 169 KDGGTHLAGFRAALTRGLNSYLESENILKKEKVSVTGDDAREGLTAIISVKVPDPKFSSQ 228

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRK 441
           TK KLVS + +  VE A+   F  YL++NP  A  +   +I         R+ +    RK
Sbjct: 229 TKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRK 288

Query: 442 TAIRKLRLPGKLADCSQNIA 461
           +A+    LPGKLADC +   
Sbjct: 289 SALDIAGLPGKLADCQEKDP 308


>gi|229100794|ref|ZP_04231613.1| DNA gyrase subunit B [Bacillus cereus Rock3-28]
 gi|228682623|gb|EEL36681.1| DNA gyrase subunit B [Bacillus cereus Rock3-28]
          Length = 75

 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/68 (52%), Positives = 45/68 (66%)

Query: 36  ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95
             Q   + YD S I++LEGLE VR RPGMYIG T  K LHHL  E++DN++DE +AGY +
Sbjct: 3   QKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62

Query: 96  LIEVSLDG 103
            I V L  
Sbjct: 63  EINVVLKK 70


>gi|308522560|dbj|BAJ22893.1| gyrase B subunit [Vibrio sagamiensis]
          Length = 265

 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 79/275 (28%), Positives = 139/275 (50%), Gaps = 13/275 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       ++ GT+I F 
Sbjct: 1   SGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVVGDT-DQTGTQIRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F  +  F    L K  +  ++L+  +      ++E        + + + + GG++
Sbjct: 60  PSAETF-SQTEFHYDILAKRLRELSFLNSGISIKLIDEREAD------KSDHYMYEGGIQ 112

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++    N++ I  +IF    E++     +VE A+ W +     I  + N I   +GGT
Sbjct: 113 AFVEHLNTNKTPIIDKIFHFNFERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGT 170

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QTK KL
Sbjct: 171 HLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKL 230

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
           VS + +  VE+A+ +    +L+  P EA  +   +
Sbjct: 231 VSSEVKSAVESAMGEKLSEFLIDYPTEAKMVCSKI 265


>gi|321401446|gb|ADW83185.1| DNA gyrase subunit B [Flavobacterium psychrophilum]
          Length = 252

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 93/256 (36%), Positives = 131/256 (51%), Gaps = 9/256 (3%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA-RQNTIFSQKFSRGIPLSPLEKKEK 198
           GGKFD  +Y++SGGLHGVG+SVVNALS+ L  TV      I+ Q++ +G  L P+++  +
Sbjct: 1   GGKFDKDSYKVSGGLHGVGVSVVNALSNHLRATVHSSDGKIYEQEYEKGKALYPVKQIGE 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
               RGT +TF PDP IF     +    L    +  ++L+  +   ++  +E  +K G  
Sbjct: 61  TTK-RGTIVTFYPDPSIFTQTIEYSYDTLSARMRELSFLNKGITITFTDKRE-KDKDGNF 118

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317
             E F+   GLK Y++    NR      I    +         VE A+ +       I S
Sbjct: 119 VSEIFHSTEGLKEYIRYLDGNRE---PIIAHVISMDNDKGEIPVEVALIYNTSYTENIFS 175

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIR 375
           Y N I T EGGTH  G R  LTR +KKYA+ +    K    I  DD       I+SV + 
Sbjct: 176 YVNNINTHEGGTHLQGFRTGLTRSLKKYADSSGMLDKLKFEISGDDFREGLTAIISVKVA 235

Query: 376 EPEFAGQTKTKLVSLD 391
           EP+F GQTKTKL + +
Sbjct: 236 EPQFEGQTKTKLGNRE 251


>gi|12641857|dbj|BAB21547.1| type II DNA topoisomerase [Porphyra haitanensis]
          Length = 383

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 86/411 (20%), Positives = 138/411 (33%), Gaps = 39/411 (9%)

Query: 113 GRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVT 172
           G GIPV  H K       E+I   L     +D+   ++ GG +G G  + N  S    V 
Sbjct: 1   GAGIPVAMHAK-EGVYVPELIFGHLLTSSNYDDGERKVVGGRNGYGAKLANIFSTRFVVE 59

Query: 173 VAR--QNTIFSQKFSRGIPLSPLEKKEKVRNKR--GTRITFRPD--PKIFGDKAGFDAAR 226
            A       ++  F R +              R   TRITF PD      G       A 
Sbjct: 60  TADAASGHTYTHVFRRNMMDRGAPAIRPSAKPRDAWTRITFEPDLAKFGMGRLDADAVAI 119

Query: 227 LLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSE 286
           L       A +   +    +  K     +              K Y+   L +       
Sbjct: 120 LQMRVVDMAGVVPGIGVYLNGVKLKVHSF--------------KQYVDLHLADAPDAPRI 165

Query: 287 IFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYA 346
                        G  E  ++  +     TS+ N+I T +GGTH   +   L   I+++ 
Sbjct: 166 HDAPAG-------GRWEVVVSLSDGQLTQTSFVNSIATTKGGTHVGHVADQLVGRIQEHI 218

Query: 347 ELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
              +  +A+ +    +       L   +  P F   TK  L S  +    +    D    
Sbjct: 219 A--KKHKALKVKPFQIKSQLSIFLKCLVENPAFDSHTKEMLTSRPSSFGSKWTCPDRVAK 276

Query: 407 YLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS-QNIAHGTE 465
                 +  + ++E V+  +  R  +   +    K A          A+ +    +    
Sbjct: 277 -----ELLKSGVVESVLSLAASRQVKELAKTDGGKRARVSGIPKLDDANLAGTRDSARCT 331

Query: 466 LFIVEGDSAGGSAKQARN---RSNQAVLPLRGKILNVASAGSEKIRNNQQI 513
           L + EGDSA   A    +   R    V PLRGK+LNV  A  ++I +N +I
Sbjct: 332 LILTEGDSAKALAISGLSVLGRDLYGVFPLRGKLLNVREATHKQIMDNAEI 382


>gi|313635488|gb|EFS01726.1| DNA gyrase, B subunit [Listeria seeligeri FSL N1-067]
          Length = 82

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 4/79 (5%)

Query: 607 HGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK 666
               K  I R+KGLGEM   QL +T M+   RTLL+V I   +    D  ++   LMG +
Sbjct: 7   DKDTKYGIQRYKGLGEMNPEQLWDTTMNPEHRTLLQVNIKDAI----DADETFEMLMGDR 62

Query: 667 ADERFKFIQERASFIDDVG 685
            + R KFI+E A ++ ++ 
Sbjct: 63  VEPRRKFIEENAQYVKNLD 81


>gi|161339292|gb|ABX64397.1| GyrB [Gordonia amicalis]
          Length = 339

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 103/342 (30%), Positives = 166/342 (48%), Gaps = 36/342 (10%)

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------------- 249
           PDP+IF +   F+A  + +  Q  A+L+  +    +  +                     
Sbjct: 1   PDPEIFTETTRFNAETVARRLQEMAFLNKGLTITLTDQRPQAVEAPGDANGDEDAPATDV 60

Query: 250 --------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301
                   E A+    P+   +++P GL  Y++     +  I + +     + +G     
Sbjct: 61  AEVVLTETEKAQAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHNTVIGFSAKGEGH---E 117

Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISII 358
           VE A+ W       + ++ NTI T EGGTHE G R ALT  + KYA   +   ++   + 
Sbjct: 118 VEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALEKKLIKEKDGKLT 177

Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
            DD+      ++S  + +P+F GQTKTKL + + +  V+    +   H+   NP EA  +
Sbjct: 178 GDDIREGLAAVISAKVSDPQFEGQTKTKLGNTEIKGFVQRTCNEHLGHWFEANPAEAKII 237

Query: 419 LEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477
           ++   + ++ R+  R+    V RKTA     LPGKLADC  N     E++IVEGDSAGGS
Sbjct: 238 IKKAADSAQARMAARRAREMVRRKTATDIGGLPGKLADCRSNDPTKCEVYIVEGDSAGGS 297

Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519
           AK  R+   QA+LPLRGKI+NV  A  +++  N ++  ++ A
Sbjct: 298 AKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITA 339


>gi|58465063|gb|AAW78427.1| DNA topoisomerase II beta subunit [Shewanella halifaxensis HAW-EB4]
          Length = 313

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 98/324 (30%), Positives = 159/324 (49%), Gaps = 15/324 (4%)

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           V ALS  L +T+ R   ++ Q ++ G+P +P+    +     GT I F P  + F D   
Sbjct: 1   VYALSSXLQMTIRRDGKVYEQFYTHGVPDAPIAPIGEATK-TGTEIRFWPSTETFTDVL- 58

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F    L K  +  ++L+  V      +++  +       E F + GG+  ++     N++
Sbjct: 59  FHFDILAKRVRELSFLNSGVGIRLVDERDNRD-------EFFKYEGGISAFVDYLNVNKT 111

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            ++ E+F    E++     TVE A+ W +     I  + N I   +GGTH +G R ALTR
Sbjct: 112 PVNKEVFHFCQERED--GITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRGALTR 169

Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +  Y E      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE 
Sbjct: 170 NLNNYMEREGYNKKGKTAATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQ 229

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
            + +    YL+++P EA  ++  +I+        R+ +    RK A+    LPGKLADC 
Sbjct: 230 TMGEQLGDYLMEHPNEAKMIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQ 289

Query: 458 QNIAHGTELFIVEGDSAGGSAKQA 481
           +     +E++IVEGDSAGGSAK  
Sbjct: 290 EKDPGLSEIYIVEGDSAGGSAKXG 313


>gi|40019245|emb|CAE92286.1| DNA gyrase subunit B [Streptococcus mitis]
          Length = 83

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/84 (44%), Positives = 58/84 (69%), Gaps = 1/84 (1%)

Query: 68  GTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNK 127
            T ++ LHHL  E++DN++DE +AG+A+ I+V ++ +  +TVVD+GRGIPV+   K   +
Sbjct: 1   STSKEGLHHLVWEIVDNSIDEALAGFASHIQVFIEPDNSITVVDDGRGIPVDIQEK-TGR 59

Query: 128 STLEIILTTLHAGGKFDNSTYEIS 151
             +E + T LHAGGKF    Y++S
Sbjct: 60  PAVETVFTVLHAGGKFGGGGYKVS 83


>gi|209408290|emb|CAP19830.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 288

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 85/276 (30%), Positives = 137/276 (49%), Gaps = 15/276 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+EL +T+ R+  ++ Q +  G+P +PL    +  +  GT+I F+P
Sbjct: 1   GGLHGVGVSVVNALSEELMLTIRREGKVWEQLYRHGVPQAPLAPVGET-DTSGTQIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL  
Sbjct: 60  SSETFQNIH-FSWDILAKRLRELSFLNSGVGIVLRDERTAKE-------ELFKYEGGLSA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++     N++ ++           G     VE A+ W +     I  + N I   +GGTH
Sbjct: 112 FVAYLNTNKTPVNEVFHFNVQRDDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  Y E      K  I+   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LAGFRSALTRNLNSYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           S + +  VE  +   F  +L+++P EA  ++  +I+
Sbjct: 229 SSEVKTAVEQEMGKYFGDFLLEHPGEAKAVVGKMID 264


>gi|11078751|dbj|BAB17380.1| DNA gyrase subunit B [Pseudomonas straminea]
 gi|11078811|dbj|BAB17410.1| DNA gyrase subunit B [Pseudomonas fulva]
          Length = 296

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 96/308 (31%), Positives = 149/308 (48%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS EL +T+ R   I+ Q +  G+P +PL       +  GT+I F+P
Sbjct: 1   GGLHGVGVSVVNALSKELVLTIRRSGKIWEQTYVHGVPQAPLAAVGDT-DGTGTQIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
               F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SEDTFANIH-FSWDILAKRLRELSFLNSGVGILLKDERTAKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++    N++ ++           G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVEYLNVNKTAVNQVFHFNVQRDDGV---GVEVALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  Y E      K  +S   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LAGFRSALTRNLNNYIEQEGLAKKHKVSTTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L+++P EA  ++  +I+        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKYFADFLLEHPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|11078891|dbj|BAB17450.1| DNA gyrase subunit B [Pseudomonas mendocina]
          Length = 297

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 95/309 (30%), Positives = 148/309 (47%), Gaps = 17/309 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS EL +T+ R+  ++ Q +  G+P   L          GT + F+P
Sbjct: 1   GGLHGVGVSVVNALSHELRLTIRREGKVWEQVYHHGVPQFALRPVGDTEG-SGTEVHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
            P  F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SPDTFRNIH-FSWDILAKRIRELSFLNSGVGIVLRDERAGKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
           +++    N++ ++       + E+ G     VE A+ W +     I  + N I   +GGT
Sbjct: 112 FVEYLNTNKTAVNQVFHFNCQREEDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGT 168

Query: 330 HESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R ALTR +  Y E     +        DD       I+SV + +P+F+ QTK KL
Sbjct: 169 HLAGFRSALTRHLNNYIEQEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKL 228

Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRK 446
           VS + +  VE  +   F  +L++NP EA  ++  +I+        R+ +    RK A+  
Sbjct: 229 VSSEVKTAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDI 288

Query: 447 LRLPGKLAD 455
             LPGKLAD
Sbjct: 289 AGLPGKLAD 297


>gi|311358938|gb|ADP94158.1| TopB [Geobacillus stearothermophilus]
          Length = 274

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 82/286 (28%), Positives = 135/286 (47%), Gaps = 17/286 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS+ L VT+ R   I+ Q+F  G       +K    NK GT I F+PDP IF  
Sbjct: 1   ASVVNALSEWLVVTIHRDGFIYRQRFEHGGKPVTTLEKIGTTNKTGTIIQFKPDPTIFST 60

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              FD   L +  +  A+L   +K     ++          +E FY+  G++ ++    E
Sbjct: 61  TV-FDYETLSERLRESAFLLKGLKIELVDER-------TGMREVFYYENGIEAFVAYLNE 112

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVA 337
            + ++         E+ G     VE+A  + +   E   S+ N + T +GGTHE+G + A
Sbjct: 113 EKDVLHPV-VYFAGEQNGI---EVEFAFQFHDGYSENVLSFVNNVRTKDGGTHEAGAKTA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
           +TR   +YA       ++  ++   D+      ++SV I E   +F GQTK KL + +A+
Sbjct: 169 MTRVFNEYARRVGLLKEKDKNLEGTDIREGLSAVVSVRIPEHLLQFEGQTKGKLGTSEAR 228

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN 439
             V+  + +   ++L +NP  +  L++  I   + R   RK RE  
Sbjct: 229 SAVDAVVSEQLMYFLQENPDVSAMLIKKAIRAYQAREAARKAREEA 274


>gi|281331990|emb|CAZ39969.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 254

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 83/264 (31%), Positives = 135/264 (51%), Gaps = 13/264 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SV NALS +L V V +    + Q+FS G  +SPL K E     RGT + F
Sbjct: 1   VSGGLHGVGVSVXNALSQKLLVDVFQGGFHYQQEFSNGAAVSPLAKLETTTK-RGTTVRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P    F D   F    L +  +  ++L+  VK   + ++          +++F++ GG+
Sbjct: 60  WPSTVAFHDNVEFHYEILARRLRELSFLNSGVKIVLADERGD------GRRDDFHYEGGI 113

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           +++++   + ++ +   +     E  G    TVE A+ W +     +  + N I   +GG
Sbjct: 114 RSFVEHLAQLKTPLHPNVIAVSGEHNGI---TVEVALQWTDSYQETMYCFTNNIPQKDGG 170

Query: 329 THESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  Y E     +   I++  DD+    + +LSV + +P F+ QTK K
Sbjct: 171 THLAGFRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEK 230

Query: 387 LVSLDAQRTVENALRDPFDHYLVQ 410
           LVS D +  VENA     + +L +
Sbjct: 231 LVSSDVRPAVENAFGQRLEEFLQE 254


>gi|159576566|dbj|BAF92831.1| DNA gyrase subunit B [Halomonas hydrothermalis]
          Length = 322

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 116/336 (34%), Positives = 163/336 (48%), Gaps = 18/336 (5%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK-VRNKRGTR 206
           Y++ GGLHGVG+SVVNALS  L V V R     +  F  G  +  L +  K  +   GT 
Sbjct: 1   YKVCGGLHGVGVSVVNALSRRLDVEVTRDGGRHAMAFEFGQKVEELHEIGKAAKRASGTL 60

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           + F PD + + D       +L  + ++KA L   +                  K E+ F 
Sbjct: 61  VRFWPD-ESYFDSPKLALGKLKHLLRAKAVLCPGLAVTLV--------EPDGTKTEWEFA 111

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILT 324
            GL+ YL    +   ++    F G           V+WAI W  E  +    SY N I T
Sbjct: 112 DGLRDYLVEATDGYEVLPPSPFVGHFTDD---ENGVDWAIQWLPEGGDALLESYVNLIPT 168

Query: 325 DEGGTHESGLRVALTRGIKKYAEL-TQNKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
            +GGTH +G R  L   ++++ E  +   R I + +DDL   A  +LSV + +P+FAGQT
Sbjct: 169 PQGGTHVNGFRSGLLDALREFCEYRSLLPRGIKLTADDLWERASFVLSVKMLDPQFAGQT 228

Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443
           K +L S      V   L+D F  +L  +  +   L E VI  ++ R ++ K  +V RK  
Sbjct: 229 KERLSSRTIAGFVSGVLKDAFSLWLNHHVDQGEALAELVINAAQRRQKKAK--KVARKKV 286

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479
                LPGKLADCS      +ELF+VEGDSAGGSAK
Sbjct: 287 TSGPALPGKLADCSGQDPAQSELFLVEGDSAGGSAK 322


>gi|219536314|gb|ACL18062.1| DNA gyrase subunit B [Pseudomonas sp. TLC13:3-3.5cm-3G]
          Length = 264

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 84/276 (30%), Positives = 135/276 (48%), Gaps = 15/276 (5%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P  P++   +     GT+I F+P 
Sbjct: 1   GLHGVGVSVVNALSEELVLTVRRSGKIWEQTYIHGVPKEPMKIVGE-SETTGTQIHFKPS 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
              F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +
Sbjct: 60  DLTFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAF 111

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++    N++ ++         + G     VE A+ W +     +  + N I   +GGTH 
Sbjct: 112 VEYLNTNKTPVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHL 168

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
            G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS
Sbjct: 169 VGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVS 228

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
            + +  VE  +   F  +L++NP EA  ++  +I+ 
Sbjct: 229 SEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDA 264


>gi|164456621|dbj|BAF97803.1| gyrase B subunit [Photobacterium leiognathi]
          Length = 264

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 74/273 (27%), Positives = 135/273 (49%), Gaps = 13/273 (4%)

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+++ +T+ R   I  Q +  G+P +PL       ++ GTRI F P  + F +   
Sbjct: 1   VNALSEKVELTIKRGGHIHQQVYRHGVPDAPLAVIGDT-DETGTRIRFWPSEETFTNI-E 58

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F    L K  +  ++L+  V    + ++E        + + F + GG++ +++    N++
Sbjct: 59  FQYEILAKRLRELSFLNSGVSIKLNDERE------EGKHDHFMYEGGIQAFVEHLNRNKT 112

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I  ++F   +E+      +VE A+ W +     I  + N I   +GGTH +G R ALTR
Sbjct: 113 PIHPKVFHFDSERDD--GISVEVAMQWNDGFQESIFCFTNNIPQRDGGTHLAGFRGALTR 170

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE+
Sbjct: 171 TLNSFMDKEGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAAVES 230

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
           A+ +    +L++NP +A  +   +I+ S  R  
Sbjct: 231 AMNEKLAEFLLENPADAKTVCTKIIDASRAREA 263


>gi|242095824|ref|XP_002438402.1| hypothetical protein SORBIDRAFT_10g016438 [Sorghum bicolor]
 gi|241916625|gb|EER89769.1| hypothetical protein SORBIDRAFT_10g016438 [Sorghum bicolor]
          Length = 396

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 64/338 (18%), Positives = 115/338 (34%), Gaps = 57/338 (16%)

Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA-LRDPFDHYLVQNPIEAT 416
               +             E       K K+ ++     V++         Y         
Sbjct: 5   NGVVIEGGVQFDTITRHVEEHLKSSIKRKMKNVQNIEDVKSHLWAFINADYPFFYGEPQL 64

Query: 417 KLLEWVIERSEERLRRRK----QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472
           ++    I +   R   ++      +   +                   +    L   EGD
Sbjct: 65  QVAHSFIFKEIFRCALKETLAWALKEEDENIEANQTKFQDATRAGGVDSQKCTLIFTEGD 124

Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           SA   A  + +R    VL L+GK+LNV  A  +KI +N++I ++ + +G   +  Y +E 
Sbjct: 125 SAKDLALGSVHRDYFGVLALKGKLLNVRDASLKKILDNEEINNMRKIIGLDYKKHYNDEK 184

Query: 533 ----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE---QKHLFLISPPLFRITQG 585
               LRY KV++MTD D DG HI  L++  F+     L++   +  L  +  PL      
Sbjct: 185 DLKDLRYGKVMVMTDQDPDGFHIKGLIINLFHVFWPSLLKIKSKSFLCDLVTPLV----- 239

Query: 586 TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645
                                           KGLG     +  +   D +      V +
Sbjct: 240 --------------------------------KGLGTRTLKEGMQYFKDIDIHQKYFVWV 267

Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683
           N+     K  + + +K    K +ER ++I    +F+ +
Sbjct: 268 NE--EDDKAIKTAFSK---HKVEERKEWIY---NFLHN 297


>gi|295147502|gb|ADF80582.1| DNA topoisomerase IV subunit B [Geobacillus sp. 49]
          Length = 288

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 83/292 (28%), Positives = 137/292 (46%), Gaps = 17/292 (5%)

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+ L VT+ R   I+ Q+F  G       +K    NK GT I F+PDP IF     
Sbjct: 1   VNALSEWLVVTIHRDGFIYRQRFEHGGKPVTTLEKIGTTNKTGTIIQFKPDPTIFSTTV- 59

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L +  +  A+L   +K     ++          +E FY+  G++ ++    E + 
Sbjct: 60  FDYETLSERLRESAFLLKGLKIELVDER-------TGMREVFYYENGIEAFVAYLNEEKD 112

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340
           ++         E+ G     VE+A  + +   E   S+ N + T +GGTHE+G + A+TR
Sbjct: 113 VLHPV-VYFAGEQNGI---EVEFAFQFHDGYSENVLSFVNNVRTKDGGTHEAGAKTAMTR 168

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA       ++  ++   D+      ++SV I E   +F GQTK KL + +A+  V
Sbjct: 169 VFNEYARRVGLLKEKDKNLEGTDIREGLSAVVSVRIPEHLLQFEGQTKGKLGTSEARSAV 228

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR 448
           +  + +   ++L +NP  +  L++  I   + R   RK RE  R    RK +
Sbjct: 229 DAVVSEQLMYFLQENPDVSAMLIKKAIRAYQAREAARKAREEARSGKKRKGK 280


>gi|146263034|gb|ABQ15287.1| GyrB [Yersinia enterocolitica]
          Length = 206

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 61/214 (28%), Positives = 106/214 (49%), Gaps = 12/214 (5%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS++L + + R+  +  Q +  G+P +PL+   +  ++ GT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DQTGTTV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F    L K  +  ++L+  V       +   E       + F++ G
Sbjct: 60  RFWPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDKRNDKE-------DHFHYEG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K +++   +N++ I  ++F   T K       VE A+ W +     I  + N I   +
Sbjct: 113 GIKAFVEYLNKNKNPIHPKVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRD 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKRAISIISD 360
           GGTH  G R A+TR +  Y +     +   I + 
Sbjct: 170 GGTHLVGFRTAMTRTLNSYMDKEGYSKKAKISAP 203


>gi|213647471|ref|ZP_03377524.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
          Length = 326

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ LE   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   +       
Sbjct: 241 FEQALEWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAI----AAD 296

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
                LMG   + R  FI+E A    ++ 
Sbjct: 297 QLFTTLMGDAVEPRRAFIEENALKAANID 325



 Score =  123 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 35/84 (41%), Positives = 56/84 (66%)

Query: 525 RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ 584
           R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++  PPL+++ +
Sbjct: 2   RDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKK 61

Query: 585 GTKSVYAHDEEHKQKILEEFKKHG 608
           G +  Y  D+E   +        G
Sbjct: 62  GKQEQYIKDDEAMDQYQISIALDG 85


>gi|45126711|dbj|BAD12203.1| DNA gyrase subunit B [Halomonas sp. TNB I26]
 gi|45126713|dbj|BAD12204.1| DNA gyrase subunit B [Halomonas sp. SYO J42]
          Length = 276

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 93/275 (33%), Positives = 136/275 (49%), Gaps = 15/275 (5%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS EL +T+ RQ  +F Q +  G+P +PL    K     GTR+ FRP 
Sbjct: 1   GLHGVGVSVVNALSAELRLTIWRQGEVFEQVYHHGVPQAPLGVVGKTEK-SGTRVHFRPS 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
           P+ FG+   F    L K  +  ++L+  V      ++   E       E F + GGLK +
Sbjct: 60  PETFGN-IEFHFDILAKRLRELSFLNSGVAIRLLDERSGKE-------ELFRYEGGLKAF 111

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           +     N+S+I+         + G     VE A+ W E     I  Y N I   +GG H 
Sbjct: 112 VDHLNTNKSVINPVFHFNAIREDGV---EVEVAMQWSEAFTENIFCYTNNIPQRDGGAHL 168

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G R  LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS
Sbjct: 169 AGFRAGLTRTLNNYIEAENLLKKAKVNTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVS 228

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            + +  VE  +   F  YLV+ P EA  ++  +++
Sbjct: 229 SEVKTAVEQEMSRLFSEYLVEKPNEAKAIVNKMLD 263


>gi|146263046|gb|ABQ15293.1| GyrB [Yersinia massiliensis]
 gi|146263052|gb|ABQ15296.1| GyrB [Yersinia massiliensis]
          Length = 206

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 61/213 (28%), Positives = 106/213 (49%), Gaps = 12/213 (5%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS++L + + R+  +  Q +  G+P +PL+   +  ++ GT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYRMGVPQAPLKVVGET-DQTGTTV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F    L K  +  ++L+  V       +   E       + F++ G
Sbjct: 60  RFWPSFETFTNNTEFQYETLAKRLRELSFLNSGVSIKLRDKRNDRE-------DHFHYEG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K +++   +N++ I  ++F   T K       VE A+ W +     I  + N I   +
Sbjct: 113 GIKAFVEYLNKNKTPIHPKVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRD 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359
           GGTH  G R A+TR +  Y +     +   I +
Sbjct: 170 GGTHLVGFRTAMTRTLNSYMDKEGYSKKAKISA 202


>gi|302122561|gb|ADK92948.1| topoisomerase IV subunit B [Geobacillus sp. C12]
          Length = 274

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 82/286 (28%), Positives = 135/286 (47%), Gaps = 17/286 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
            SVVNALS+ L VT+ R   I+ Q+F  G       +K    NK GT I F+PDP IF  
Sbjct: 1   ASVVNALSEWLGVTIHRDGFIYRQRFEHGGKPVTTLEKIGTTNKTGTIIQFKPDPTIFST 60

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              FD   L +  +  A+L   +K     ++          +E FY+  G++ ++    E
Sbjct: 61  TV-FDYETLSERLRESAFLLKGLKIELVDER-------TGMREVFYYENGIEAFVAYLNE 112

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVA 337
            + ++         E+ G     VE+A  + +   E   S+ N + T +GGTHE+G + A
Sbjct: 113 EKDVLHPV-VYFAGEQNGI---EVEFAFQFHDGYSENVLSFVNNVRTKDGGTHEAGAKTA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393
           +TR   +YA       ++  ++   D+      ++SV I E   +F GQTK KL + +A+
Sbjct: 169 MTRVFNEYARRVGLLKEKDKNLEGTDIREGLSAVVSVRIPEHLLQFEGQTKGKLGTSEAR 228

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN 439
             V+  + +   ++L +NP  +  L++  I   + R   RK RE  
Sbjct: 229 SAVDAVVSEQLMYFLQENPDVSAMLIKKAIRAYQAREAARKAREEA 274


>gi|52546300|dbj|BAD51533.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546302|dbj|BAD51534.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546304|dbj|BAD51535.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546306|dbj|BAD51536.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546308|dbj|BAD51537.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546310|dbj|BAD51538.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546312|dbj|BAD51539.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546314|dbj|BAD51540.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546316|dbj|BAD51541.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546318|dbj|BAD51542.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546320|dbj|BAD51543.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546322|dbj|BAD51544.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546324|dbj|BAD51545.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546326|dbj|BAD51546.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546328|dbj|BAD51547.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546330|dbj|BAD51548.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546332|dbj|BAD51549.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546334|dbj|BAD51550.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546336|dbj|BAD51551.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546338|dbj|BAD51552.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546340|dbj|BAD51553.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546342|dbj|BAD51554.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546344|dbj|BAD51555.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546346|dbj|BAD51556.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546348|dbj|BAD51557.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546350|dbj|BAD51558.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546352|dbj|BAD51559.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546354|dbj|BAD51560.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546356|dbj|BAD51561.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546358|dbj|BAD51562.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546360|dbj|BAD51563.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546362|dbj|BAD51564.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546364|dbj|BAD51565.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546366|dbj|BAD51566.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546368|dbj|BAD51567.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546370|dbj|BAD51568.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546372|dbj|BAD51569.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546374|dbj|BAD51570.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546376|dbj|BAD51571.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546378|dbj|BAD51572.1| DNA gyrase subunit B [Burkholderia glumae]
 gi|52546380|dbj|BAD51573.1| DNA gyrase subunit B [Burkholderia glumae]
          Length = 267

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 87/277 (31%), Positives = 132/277 (47%), Gaps = 27/277 (9%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKV 199
           GGLHGVG+S VNALS  L + V R       +F RG+             +SP+E   + 
Sbjct: 1   GGLHGVGVSCVNALSSWLRLVVRRNGKKHFMEFHRGVAQNRVLETRDGVEVSPMEVVGET 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            N RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E      
Sbjct: 61  EN-RGTEVHFMADPTIFGT-VEYHYDILAKRIRELSFLNNGVRIRLTDQRSGKEDD---- 114

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              F F GG+K +++   + +S++   IF    EK G     VE A+ W +     +  +
Sbjct: 115 ---FAFVGGVKGFVEYINKTKSVLHPTIFHIIGEKDGV---GVEVAMQWNDSYNENVLCF 168

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + E
Sbjct: 169 TNNIPQRDGGTHLTGLRAAMTRVINKYIVDNEIAKKAKVETSGDDMREGLSCVLSVKVPE 228

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
           P+F+ QTK KLVS + +  VE  +    + +L++ P 
Sbjct: 229 PKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPN 265


>gi|289807370|ref|ZP_06537999.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 86

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 36/85 (42%), Positives = 54/85 (63%), Gaps = 1/85 (1%)

Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623
             L++  H+++  PPL+RI  G +  YA  EE K  +LE+ K+  KGK  + RFKGLGEM
Sbjct: 3   RALVKNGHVYVALPPLYRIDLGKEVYYALTEEEKAGVLEQLKRK-KGKPNVQRFKGLGEM 61

Query: 624 LASQLKETAMDANKRTLLRVEINKD 648
              QL+ET +D N R L+++ I+ +
Sbjct: 62  NPMQLRETTLDPNTRRLVQLTISDE 86


>gi|164456757|dbj|BAF97871.1| gyrase B subunit [Vibrio proteolyticus]
          Length = 238

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 76/248 (30%), Positives = 126/248 (50%), Gaps = 13/248 (5%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       +K GT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKTGTQ 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F P  + F +   F    L K  +  ++L+  V      ++E        + + F + 
Sbjct: 60  IRFWPSAETFSN-TEFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KHDHFMYE 112

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GG++ ++     N++ I  +IF    E++      VE A+ W +     I  + N I   
Sbjct: 113 GGIQAFVDHLNTNKTPIIDKIFHFNFERED--GIAVEVAMQWNDGFQENIFCFTNNIPQR 170

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           +GGTH +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QT
Sbjct: 171 DGGTHLAGFRAALTRTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQT 230

Query: 384 KTKLVSLD 391
           K KLVS +
Sbjct: 231 KDKLVSSE 238


>gi|146263050|gb|ABQ15295.1| GyrB [Yersinia frederiksenii]
          Length = 206

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 61/213 (28%), Positives = 106/213 (49%), Gaps = 12/213 (5%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS++L + + R+  +  Q +  G+P +PL+   +  ++ GT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYRMGVPQAPLKVVGET-DQTGTTV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F    L K  +  ++L+  V       +   E       + F++ G
Sbjct: 60  RFWPSFQTFTNNIEFQYEILAKRLRELSFLNSGVSIKLRDKRNDKE-------DHFHYEG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K +++   +N++ I  ++F   T K       VE A+ W +     I  + N I   +
Sbjct: 113 GIKAFVEYLNKNKNPIHPKVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRD 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359
           GGTH  G R A+TR +  Y +     +   I +
Sbjct: 170 GGTHLVGFRTAMTRTLNSYMDKEGYSKKAKISA 202


>gi|296123799|ref|YP_003631577.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus
           DSM 3776]
 gi|296016139|gb|ADG69378.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus
           DSM 3776]
          Length = 325

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 74/284 (26%), Positives = 116/284 (40%), Gaps = 23/284 (8%)

Query: 53  EGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFL-TVVD 111
             LE +R RP MY+G TD   LHHLF+E++DNA+D+ +A  A  +EV    +G +    D
Sbjct: 4   TDLEAIRKRPAMYVGSTDVNGLHHLFNELLDNAIDQYLANQATYVEV--HTSGEILEFTD 61

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS-TYEISGGLHGVGISVVNALSDELH 170
           +G G+P E  P   + S  +  LT +       ++ T  I     G G+ ++ AL++   
Sbjct: 62  DGPGLPFEK-PGPHSGSLADYYLTHIRLDTPTADNHTPHIHLSGWGCGLRIITALTETCE 120

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           VT +R +  + Q FSRGI   P          RGT      D  +F     +   R+ + 
Sbjct: 121 VTSSRNHLAWKQSFSRGISNGPPHIVGHTSE-RGTTFRLSIDRDLFSG--DWCQHRMNQR 177

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
               A+L   +                 +   F    GL          ++  + +    
Sbjct: 178 LIEAAHLFPGLLV-------------KSQGLHFKTLRGLADLAANVAHEKNSPNPDRIWW 224

Query: 291 KTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGL 334
                      ++ AIA  +   E  S+ N  LT E GTH + L
Sbjct: 225 F--NAVFEDFHLQAAIAGTDSETEWKSFANGNLTIENGTHLTAL 266


>gi|146263044|gb|ABQ15292.1| GyrB [Yersinia rohdei]
          Length = 206

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 61/213 (28%), Positives = 106/213 (49%), Gaps = 12/213 (5%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS++L + + R+  +  Q +  G+P +PL+   +  ++ GT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYRMGVPQAPLKVVGET-DQTGTTV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F    L K  +  ++L+  V       +   E       + F++ G
Sbjct: 60  RFWPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLRDKRNDKE-------DHFHYEG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K +++   +N++ I  ++F   T K       VE A+ W +     I  + N I   +
Sbjct: 113 GIKAFVEYLNKNKNPIHPKVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRD 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359
           GGTH  G R A+TR +  Y +     +   I +
Sbjct: 170 GGTHLVGFRTAMTRTLNSYMDKEGYSKKAKISA 202


>gi|197261009|gb|ACH56979.1| DNA gyrase subunit B [Acinetobacter venetianus]
          Length = 291

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 84/291 (28%), Positives = 141/291 (48%), Gaps = 15/291 (5%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS +LH+T+ R   I  Q+++ G P  PL+   +  +  GT   F P  ++
Sbjct: 1   GVGVSVVNALSKKLHLTIHRAGQIHEQEYAHGDPQYPLKVVGET-DTSGTTARFWPS-EL 58

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
              +  F    L +  +  ++L+  V+     ++   E         + + GGL  +++ 
Sbjct: 59  TFSQTIFSVDILARRLRELSFLNAGVRIVLRDERVNLE-------HIYDYEGGLSEFVKY 111

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             E ++ ++           G     VE A+ W +     +  + N I   +GGTH +G 
Sbjct: 112 INEGKTHLNDIFHFTTDADNGI---GVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGF 168

Query: 335 RVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTRG+  Y E      K  +++  DD       I+SV + +P+F+ QTK KLVS + 
Sbjct: 169 RAALTRGLNSYMENESLLKKEKVAVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEV 228

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443
           +  VE A+   F  YL++NP  A  +   +I+ +  R   RK RE+ R+ +
Sbjct: 229 KPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARVRDAARKAREMTRRKS 279


>gi|146263028|gb|ABQ15284.1| GyrB [Yersinia enterocolitica subsp. enterocolitica]
 gi|146263030|gb|ABQ15285.1| GyrB [Yersinia enterocolitica subsp. enterocolitica]
 gi|146263032|gb|ABQ15286.1| GyrB [Yersinia enterocolitica]
          Length = 206

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 61/213 (28%), Positives = 106/213 (49%), Gaps = 12/213 (5%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS++L + + R+  +  Q +  G+P +PL+   +  ++ GT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DQTGTTV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F    L K  +  ++L+  V       +   E       + F++ G
Sbjct: 60  RFWPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDKRNDKE-------DHFHYEG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K +++   +N++ I  ++F   T K       VE A+ W +     I  + N I   +
Sbjct: 113 GIKAFVEYLNKNKNPIHPKVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRD 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359
           GGTH  G R A+TR +  Y +     +   I +
Sbjct: 170 GGTHLVGFRTAMTRTLNSYMDKEGYSKKAKISA 202


>gi|209408288|emb|CAP19829.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 288

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 85/275 (30%), Positives = 136/275 (49%), Gaps = 15/275 (5%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS+EL +T+ R+  ++ Q +  G+P +PL    +  +  GT+I F+P 
Sbjct: 1   GLHGVGVSVVNALSEELLLTIRREGKVWEQLYRHGVPQAPLAAVGET-DTSGTQIHFKPS 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            + F +   F    L K  +  ++L+  V      ++   E       E F + GGL  +
Sbjct: 60  AETFQNIH-FSWDILAKRLRELSFLNSGVGIVLRDERTAKE-------ELFKYEGGLSAF 111

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           +     N++ ++           G     VE A+ W +     I  + N I   +GGTH 
Sbjct: 112 VAYLNTNKTAVNQVFHFNVQRDDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGTHL 168

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G R ALTR +  Y E      K  IS   DD       I+SV + +P+F+ QTK KLVS
Sbjct: 169 AGFRSALTRNLNNYIEQEGLAKKHKISTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVS 228

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            + +  VE  +   F  +L+++P EA  ++  +I+
Sbjct: 229 SEVKTAVEQEMGKYFADFLLEHPNEAKAVVGKMID 263


>gi|223674700|gb|ACN13046.1| DNA gyrase subunit B [Erwinia rhapontici]
          Length = 214

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 111/223 (49%), Gaps = 14/223 (6%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS++L +T+ R+  +  Q +  G+P +PL    +  +  GTR+
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKLELTIRREGKVHQQIYVHGVPQAPLSVSGET-DLTGTRV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F+   L K  +  ++L+  V       ++        + + +++ G
Sbjct: 60  RFWPSHQTFTNVVEFEYEILAKRLRELSFLNSGVSIKLEDKRD-------GKSDHYHYEG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K +++   +N++ I   +F   TEK G     VE A+ W +     I  + N I   +
Sbjct: 113 GIKAFVEYLNKNKTPIHPNVFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRD 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
           GGTH  G R A+TR +  Y +      K  +S   DD      
Sbjct: 170 GGTHLVGFRTAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLT 212


>gi|71040324|dbj|BAE16159.1| DNA gyrase subunit B [Burkholderia plantarii]
          Length = 267

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 85/277 (30%), Positives = 131/277 (47%), Gaps = 27/277 (9%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKV 199
           GGLHGVG+S VNALS  L + V R       +F RG+             +SP+E   + 
Sbjct: 1   GGLHGVGVSCVNALSSWLRLVVRRNGRKHFMEFHRGVAQNRVLETRDGVEVSPMEVVGET 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
              RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E      
Sbjct: 61  -EHRGTEVHFMADPTIFGT-VEYHYDILAKRIRELSFLNNGVRIRLTDQRSGKEDD---- 114

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              F F GG+K +++   + ++++   IF    EK G     VE A+ W +     +  +
Sbjct: 115 ---FAFVGGVKGFVEYINKTKTVLHPTIFHIIGEKDGV---GVEVAMQWNDSYNENVLCF 168

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + E
Sbjct: 169 TNNIPQRDGGTHLTGLRAAMTRVINKYIVDNEIAKKAKVETSGDDMREGLSCVLSVKVPE 228

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
           P+F+ QTK KLVS + +  VE  +    + +L++ P 
Sbjct: 229 PKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPN 265


>gi|11078755|dbj|BAB17382.1| DNA gyrase subunit B [Pseudomonas taetrolens]
          Length = 296

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 94/308 (30%), Positives = 148/308 (48%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P +P+    +     GT+I F+P
Sbjct: 1   GGLHGVGVSVVNALSELLVLTVRRSGKIWEQTYVHGVPQAPMAIVGE-SETTGTQIHFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ 
Sbjct: 60  SAETFKNIH-FSWDILAKRIRELSFLNSGVGIILKDERSGKE-------ELFKYEGGLRA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           ++     N++ ++         + G     VE A+ W +     +  + N I   +GGTH
Sbjct: 112 FVDYLNTNKTPVNEVFHFSVQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
             G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLV
Sbjct: 169 LVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +   F  +L++ P EA  ++  +I+        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQEMGKFFSDFLLERPNEAKLIVGKMIDAARAREAARKAREMTRRKGALDIA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|146263048|gb|ABQ15294.1| GyrB [Yersinia ruckeri]
          Length = 206

 Score =  134 bits (336), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 61/213 (28%), Positives = 106/213 (49%), Gaps = 12/213 (5%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS++L + + R+  +  Q +  G+P +PL+   +  ++ GT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKMVGET-DQTGTTV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F    L K  +  ++L+  V       +   E       + F++ G
Sbjct: 60  RFWPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDKRNDKE-------DHFHYEG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K +++   +N++ I  ++F   T K       VE A+ W +     I  + N I   +
Sbjct: 113 GIKAFVEYLNKNKTPIHPKVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRD 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359
           GGTH  G R A+TR +  Y +     +   I +
Sbjct: 170 GGTHLVGFRTAMTRTLNSYMDKEGYSKKAKISA 202


>gi|218937735|gb|ACL13027.1| DNA gyrase subunit B [Lactobacillus delbrueckii subsp. delbrueckii]
          Length = 311

 Score =  134 bits (336), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 105/319 (32%), Positives = 169/319 (52%), Gaps = 13/319 (4%)

Query: 187 GIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
           G  +  L++   V   + GT + F PDP IF +   FD   L    +  A+L+  +K  +
Sbjct: 1   GRVVEELKEVGTVPLTEHGTIVHFWPDPNIFTETTVFDDKILKNRIRELAFLNKGLKLTF 60

Query: 246 SCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
           +  ++  E     E + ++F GG+K Y+      + ++  E    + + +G     VE +
Sbjct: 61  TDKRKDTE-----ETDVYHFEGGIKEYVSFLNRGQEVLFDEPIYVEGKYEGI---DVEVS 112

Query: 306 IAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDL 362
           + +       + ++ N I T EGG HE+G + ALTR +  YA   +   +   ++  +D+
Sbjct: 113 LQYTTGYKTTLMTFANNIHTYEGGMHEAGFKTALTRVVNDYAHKAKILKENDDNLSGEDI 172

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW- 421
                 ++SV    P+F GQTKTKL + DA+  V+ A  + F  +L++NP  A K++E  
Sbjct: 173 REGMTAVISVKHPNPQFEGQTKTKLGNSDARTAVDRAFSETFSTFLMENPQVARKIVEKG 232

Query: 422 VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
            +        +R +    +K+ +    LPGKLAD + N  + +ELFIVEGDSAGGSAKQ 
Sbjct: 233 QLAERARVAAKRAREVTRKKSGLEIANLPGKLADNTSNDPNXSELFIVEGDSAGGSAKQG 292

Query: 482 RNRSNQAVLPLRGKILNVA 500
           R+R  QA+LP+RGKILNV 
Sbjct: 293 RSRLTQAILPIRGKILNVE 311


>gi|89143202|emb|CAJ57498.1| DNA gyrase subunit B [Microbacterium maritypicum]
          Length = 292

 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 90/292 (30%), Positives = 146/292 (50%), Gaps = 13/292 (4%)

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEK--------EEFYFPGGLKTYLQTKLENRSLIS 284
             A+L+  ++     +++ +      +         + F++  GL  Y++   + R    
Sbjct: 1   QMAFLNKGLRIELRDERDSSAYEVEEDGSTVTKQPGDVFFYERGLVDYVEYLNKVRHAEV 60

Query: 285 SEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
                   E +    + ++E A+ W       + +Y NTI T EGGTHE G R ALT  +
Sbjct: 61  VNDEIIAFESEDTERKISLEVAMQWTTSYTENVFTYANTINTHEGGTHEEGFRAALTTLV 120

Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
            KYA       ++  ++  DD+      ++S+ + EP+F GQTKTKL + +A+  V+  +
Sbjct: 121 NKYARANNLLKEKDDNLSGDDVREGLTAVISIKLGEPQFEGQTKTKLGNTEAKAFVQKVV 180

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQN 459
            D    +  +NP +A  ++   I+ +  RL  RK RE  R+ +      +P KL DC+  
Sbjct: 181 GDQLGDWFERNPNQAKNVIRKAIDAATARLAARKARETARRKSVFESAAMPDKLKDCTSK 240

Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
               +E+F+VEGDSAGGSA Q R+   QA+L LRGKILNV  A  +K   N+
Sbjct: 241 DPSISEIFLVEGDSAGGSAVQGRDPHTQAILALRGKILNVERARLDKALGNK 292


>gi|146263026|gb|ABQ15283.1| GyrB [Yersinia bercovieri]
 gi|146263042|gb|ABQ15291.1| GyrB [Yersinia mollaretii]
          Length = 206

 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 61/213 (28%), Positives = 105/213 (49%), Gaps = 12/213 (5%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS++L + + R+  +  Q +  G+P +PL+   +  +  GT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DLTGTTV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F    L K  +  ++L+  V       +   E       + F++ G
Sbjct: 60  RFWPSFETFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDKRNDRE-------DHFHYEG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K +++   +N++ I  ++F   T K       VE A+ W +     I  + N I   +
Sbjct: 113 GIKAFVEYLSKNKNPIHPKVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRD 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359
           GGTH  G R A+TR +  Y +     +   I +
Sbjct: 170 GGTHLVGFRTAMTRTLNSYMDKEGYSKKAKISA 202


>gi|309274197|gb|ADO63744.1| gyrase B [Pseudomonas cuatrocienegasensis]
          Length = 288

 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 84/275 (30%), Positives = 135/275 (49%), Gaps = 15/275 (5%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P  P+       +  GT+I F+P 
Sbjct: 1   GLHGVGVSVVNALSESLLLTVRRSGHIWEQTYVHGVPQEPMRIVGD-SDTTGTQIHFKPS 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            + F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +
Sbjct: 60  AETFANIH-FSWDILAKRLRELSFLNSGVGILLRDERSGKE-------ELFKYEGGLRAF 111

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++    N++ ++         + G     VE A+ W +     +  + N I   +GGTH 
Sbjct: 112 VEYLNVNKTAVNQVFHFTMQREDGI---GVEVALQWNDSFNENLLCFTNNIPQRDGGTHL 168

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G R ALTR +  Y E      K  I+   DD       I+SV + +P+F+ QTK KLVS
Sbjct: 169 AGFRSALTRNLNTYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVS 228

Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            + +  VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 SEVKTAVEQEMGKHFSDFLLENPNEAKAVVGKMID 263


>gi|281331928|emb|CAZ39959.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 254

 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 79/264 (29%), Positives = 134/264 (50%), Gaps = 13/264 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SV NALS +L V V +    + Q+FS G  ++ L K E     RGT + F
Sbjct: 1   VSGGLHGVGVSVXNALSQKLLVDVFQNGFHYQQEFSNGAAVTALAKLETTTK-RGTTVRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P    F D   F    L +  +  ++L+  VK   + ++          +++F++ GG+
Sbjct: 60  WPSTVAFHDNVEFHYDILARRLRELSFLNSGVKIVLADERGD------GRRDDFHYEGGI 113

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           +++++   + ++ +   + +   E  G     V+ A+ W +     +  + N I   +GG
Sbjct: 114 RSFVEHLAQLKTPLHPNVISVTGEHNGI---VVDVALQWTDSYQETMYCFTNNIPQKDGG 170

Query: 329 THESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  Y E     +   I++  DD+    + +LSV + +P F+ QTK K
Sbjct: 171 THLAGFRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEK 230

Query: 387 LVSLDAQRTVENALRDPFDHYLVQ 410
           LVS D +  VENA     + +L +
Sbjct: 231 LVSSDVRPAVENAFGARLEEFLQE 254


>gi|11078757|dbj|BAB17383.1| DNA gyrase subunit B [Marinobacterium georgiense]
          Length = 296

 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 99/308 (32%), Positives = 153/308 (49%), Gaps = 16/308 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS EL +T+ R   +  Q +  G+P  PL    +  +  GT + F+P
Sbjct: 1   GGLHGVGVSVVNALSSELKLTIRRAGQVHEQIYHHGVPEVPLRVVGET-DLTGTIVRFKP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V+     ++   E       E F + GGL  
Sbjct: 60  SEETFTN-ISFQYDILAKRLRELSFLNSGVRIRLKDERSGRE-------EVFEYEGGLAA 111

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTH 330
           +++   +N+S I+         + G     VE A+ W +   E    + N I   +GGTH
Sbjct: 112 FVEFLNQNKSPINKIFHFNTMHENGV---GVEVAMQWNDGFQEGLHCFANNIPQRDGGTH 168

Query: 331 ESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            SG R ALTR +  Y E  Q  +   +S   DD     V I+SV + +P+F+ QTK KLV
Sbjct: 169 LSGFRAALTRCLNSYIESEQLNKNGKVSTSGDDSREGLVAIISVKVPDPKFSSQTKDKLV 228

Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKL 447
           S + +  VE  +    + YL++NP +A  +++ +I+        R+ +    RK A+   
Sbjct: 229 SSEVKTAVEQLMASELNAYLLENPQDAKAVVQKMIDAARAREAARKAREMTRRKGALDVA 288

Query: 448 RLPGKLAD 455
            LPGKLAD
Sbjct: 289 GLPGKLAD 296


>gi|52546296|dbj|BAD51531.1| DNA gyrase subunit B [Burkholderia cepacia]
 gi|52546298|dbj|BAD51532.1| DNA gyrase subunit B [Burkholderia cepacia]
          Length = 267

 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 85/276 (30%), Positives = 130/276 (47%), Gaps = 27/276 (9%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKV 199
           GGLHGVG+S VNALS  L +TV R       +F RG+             +SP+      
Sbjct: 1   GGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLEVVDGVEVSPMLVTGDT 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            N RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E      
Sbjct: 61  EN-RGTEVHFMADPTIFGT-VEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD---- 114

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              F F GG+K +++   + ++ +   +F    EK G     VE A+ W +     +  +
Sbjct: 115 ---FAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGV---GVEVAMQWNDSYNENVLCF 168

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + E
Sbjct: 169 TNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPE 228

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
           P+F+ QTK KLVS + +  VE  +    + +L++ P
Sbjct: 229 PKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETP 264


>gi|52546382|dbj|BAD51574.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546384|dbj|BAD51575.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546390|dbj|BAD51578.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546392|dbj|BAD51579.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546394|dbj|BAD51580.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546396|dbj|BAD51581.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546398|dbj|BAD51582.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546400|dbj|BAD51583.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546406|dbj|BAD51586.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546410|dbj|BAD51588.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546412|dbj|BAD51589.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546414|dbj|BAD51590.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546416|dbj|BAD51591.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546422|dbj|BAD51594.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546426|dbj|BAD51596.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546428|dbj|BAD51597.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|71040308|dbj|BAE16151.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|78042236|dbj|BAE46937.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|78042238|dbj|BAE46938.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|78042240|dbj|BAE46939.1| DNA gyrase subunit B [Burkholderia gladioli]
          Length = 267

 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 85/277 (30%), Positives = 130/277 (46%), Gaps = 27/277 (9%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKV 199
           GGLHGVG+S VNALS  L + V R       +F RG+             +SP+      
Sbjct: 1   GGLHGVGVSCVNALSSWLRLVVKRNGKKHFMEFHRGVAQDRVLETRDGVEVSPMAVTGDT 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            N RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E      
Sbjct: 61  EN-RGTEVHFMADPTIFGT-VEYHYDILAKRIRELSFLNNGVRIRLTDQRSGKEDD---- 114

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              F F GG+K +++   + ++++   IF    EK G     VE A+ W +     +  +
Sbjct: 115 ---FAFVGGVKGFVEYINKTKTVLHPTIFHIIGEKDGV---GVEVAMQWNDSYNENVLCF 168

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + E
Sbjct: 169 TNNIPQRDGGTHLTGLRAAMTRVINKYIVDNEIAKKAKVETSGDDMREGLSCVLSVKVPE 228

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
           P+F+ QTK KLVS + +  VE  +    + +L++ P 
Sbjct: 229 PKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPN 265


>gi|146263038|gb|ABQ15289.1| GyrB [Yersinia kristensenii]
 gi|146263040|gb|ABQ15290.1| GyrB [Yersinia kristensenii]
          Length = 206

 Score =  133 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 60/213 (28%), Positives = 105/213 (49%), Gaps = 12/213 (5%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS++L + + R+  +  Q +  G+P +PL+   +  ++ GT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DQTGTTV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F    L K  +  ++L+  V       +   E       + F++ G
Sbjct: 60  RFWPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDKRNDRE-------DHFHYEG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G++ +++   +N++ I  ++F   T K       VE A+ W +     I  + N I   +
Sbjct: 113 GIRAFVEYLSKNKNPIHPKVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRD 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359
           GGTH  G R A+TR +  Y       +   I +
Sbjct: 170 GGTHLVGFRTAMTRTLNSYMGKEGYSKKAKISA 202


>gi|281332056|emb|CAZ40002.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 248

 Score =  133 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 76/252 (30%), Positives = 131/252 (51%), Gaps = 13/252 (5%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS +L + + +    + Q+++ G  L PL++       RGT + F
Sbjct: 1   VSGGLHGVGVSVVNALSQKLVLDIYQGGFHYQQEYADGAALHPLKQVGPSTK-RGTTLRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  K F D   F    L +  +  ++L+  VK     ++          +++F++ GG+
Sbjct: 60  WPSVKAFHDNVEFHYDILARRLRELSFLNSGVKIVLVDERGD------GRRDDFHYEGGI 113

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           +++++   + ++ +   + +   E  G    TVE A+ W +     +  + N I   +GG
Sbjct: 114 RSFVEHLAQLKTPLHPNVISVTGESNGI---TVEVALQWTDSYQETMYCFTNNIPQKDGG 170

Query: 329 THESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  Y E     +   I++  DD+    + +LSV + +P F+ QTK K
Sbjct: 171 THLAGFRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEK 230

Query: 387 LVSLDAQRTVEN 398
           LVS D +  VE+
Sbjct: 231 LVSSDVRPAVES 242


>gi|52546434|dbj|BAD51600.1| DNA gyrase subunit B [Burkholderia plantarii]
 gi|52546436|dbj|BAD51601.1| DNA gyrase subunit B [Burkholderia plantarii]
 gi|52546438|dbj|BAD51602.1| DNA gyrase subunit B [Burkholderia plantarii]
 gi|52546442|dbj|BAD51604.1| DNA gyrase subunit B [Burkholderia plantarii]
 gi|52546444|dbj|BAD51605.1| DNA gyrase subunit B [Burkholderia plantarii]
 gi|52546446|dbj|BAD51606.1| DNA gyrase subunit B [Burkholderia plantarii]
 gi|52546448|dbj|BAD51607.1| DNA gyrase subunit B [Burkholderia plantarii]
 gi|52546450|dbj|BAD51608.1| DNA gyrase subunit B [Burkholderia plantarii]
 gi|52546452|dbj|BAD51609.1| DNA gyrase subunit B [Burkholderia plantarii]
 gi|52546454|dbj|BAD51610.1| DNA gyrase subunit B [Burkholderia plantarii]
 gi|52546456|dbj|BAD51611.1| DNA gyrase subunit B [Burkholderia plantarii]
 gi|52546458|dbj|BAD51612.1| DNA gyrase subunit B [Burkholderia plantarii]
 gi|52546462|dbj|BAD51614.1| DNA gyrase subunit B [Burkholderia plantarii]
 gi|52546464|dbj|BAD51615.1| DNA gyrase subunit B [Burkholderia plantarii]
 gi|52546468|dbj|BAD51617.1| DNA gyrase subunit B [Burkholderia plantarii]
 gi|52546478|dbj|BAD51622.1| DNA gyrase subunit B [Burkholderia plantarii]
          Length = 267

 Score =  133 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 85/277 (30%), Positives = 132/277 (47%), Gaps = 27/277 (9%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKV 199
           GGLHGVG+S VNALS  L + V R       +F RG+             +SP+    + 
Sbjct: 1   GGLHGVGVSCVNALSSWLRLVVRRNGKKHFMEFHRGVAQNRELETRNGVEVSPMTVVGET 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            N RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E      
Sbjct: 61  EN-RGTEVHFMADPTIFGT-VEYHYDILAKRIRELSFLNNGVRIRLTDQRSGKEDD---- 114

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              F F GG+K +++   + ++++   IF    EK+G     VE A+ W +     +  +
Sbjct: 115 ---FAFVGGVKGFVEYINKTKTVLHPTIFHIIGEKEGV---GVEVAMQWNDSYNENVLCF 168

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + E
Sbjct: 169 TNNIPQRDGGTHLTGLRAAMTRVINKYIVDNEIAKKAKVETSGDDMREGLSCVLSVKVPE 228

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
           P+F+ QTK KLVS + +  VE  +    + +L++ P 
Sbjct: 229 PKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPN 265


>gi|76786503|gb|ABA54995.1| DNA gyrase B subunit [Pseudomonas fluorescens]
          Length = 264

 Score =  133 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 81/274 (29%), Positives = 132/274 (48%), Gaps = 15/274 (5%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS+EL +TV R   I+ Q +  G+P   ++         GT+I F+P  +
Sbjct: 3   HGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQERMKIVGD-SETTGTQIHFKPSAE 61

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
            F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++
Sbjct: 62  TFKNIH-FSWDVLAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVE 113

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G
Sbjct: 114 YLNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVG 170

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS +
Sbjct: 171 FRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSE 230

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
            +  VE  +   F  +L++NP EA  ++  +I+ 
Sbjct: 231 VKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDA 264


>gi|52546386|dbj|BAD51576.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546418|dbj|BAD51592.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546420|dbj|BAD51593.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|71040310|dbj|BAE16152.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|78042244|dbj|BAE46941.1| DNA gyrase subunit B [Burkholderia gladioli]
          Length = 267

 Score =  133 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 85/277 (30%), Positives = 130/277 (46%), Gaps = 27/277 (9%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKV 199
           GGLHGVG+S VNALS  L + V R       +F RG+             +SP+      
Sbjct: 1   GGLHGVGVSCVNALSSWLRLVVKRNGKKHFMEFHRGVAQDRVLEKRDGVEVSPMAVTGDT 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            N RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E      
Sbjct: 61  EN-RGTEVHFMADPTIFGT-VEYHYDILAKRIRELSFLNNGVRIRLTDQRSGKEDD---- 114

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              F F GG+K +++   + ++++   IF    EK G     VE A+ W +     +  +
Sbjct: 115 ---FAFVGGVKGFVEYINKTKTVLHPTIFHIIGEKDGV---GVEVAMQWNDSYNENVLCF 168

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + E
Sbjct: 169 TNNIPQRDGGTHLTGLRAAMTRVINKYIVDNEIAKKAKVETSGDDMREGLSCVLSVKVPE 228

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
           P+F+ QTK KLVS + +  VE  +    + +L++ P 
Sbjct: 229 PKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPN 265


>gi|281331984|emb|CAZ39966.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 252

 Score =  133 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 79/261 (30%), Positives = 133/261 (50%), Gaps = 13/261 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS +L V V +    + Q+FS G  ++ L K E     RGT + F
Sbjct: 1   VSGGLHGVGVSVVNALSQKLLVDVFQNGFHYQQEFSNGAAVTALAKLETTTK-RGTTVRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P    F D   F    L +  +  ++L+  VK   + ++          +++F++ GG+
Sbjct: 60  WPSTVAFHDNVEFHYDILARRLRELSFLNSGVKIVLADERGD------GRRDDFHYEGGI 113

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           +++++   + ++ +   + +   E  G     V+ A+ W +     +  + N I   +GG
Sbjct: 114 RSFVEHLAQLKTPLHPNVISVTGEHNGI---VVDVALQWTDSYQETMYCFTNNIPQKDGG 170

Query: 329 THESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  Y E     +   I++  DD+    + +LSV + +P F+ QTK K
Sbjct: 171 THLAGFRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEK 230

Query: 387 LVSLDAQRTVENALRDPFDHY 407
           LVS D +  VENA     + +
Sbjct: 231 LVSSDVRPAVENAFGARLEEF 251


>gi|146263036|gb|ABQ15288.1| GyrB [Yersinia intermedia]
          Length = 206

 Score =  133 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 60/213 (28%), Positives = 104/213 (48%), Gaps = 12/213 (5%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS++L + + R   +  Q +  G+P +PL+   +  +  GT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYKMGVPQAPLKMVGET-DLTGTTV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F    L K  +  ++L+  V       +   E       + F++ G
Sbjct: 60  RFWPSFQTFTNNIEFQYEILAKRLRELSFLNSGVSIKLKDKRNDRE-------DHFHYEG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G++ +++   +N++ I  ++F   T K       VE A+ W +     I  + N I   +
Sbjct: 113 GIRAFVEYLSKNKNPIHPKVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRD 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359
           GGTH  G R A+TR +  Y +     +   I +
Sbjct: 170 GGTHLVGFRTAMTRTLNSYMDKEGYSKKAKISA 202


>gi|223674694|gb|ACN13043.1| DNA gyrase subunit B [bacterium 2148.1]
          Length = 214

 Score =  133 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 110/223 (49%), Gaps = 14/223 (6%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS +L +T+ R+  +  Q +  G+P +PL    +     GTR+
Sbjct: 1   YKVSGGLHGVGVSVVNALSQKLELTIRREGKVHQQIYVHGVPQAPLAVSGET-ETTGTRV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F+   L K  +  ++L+  V       ++        + + +++ G
Sbjct: 60  RFWPSYETFTNVIEFEYEILAKRLRELSFLNSGVSIRLEDKRD-------GKNDHYHYEG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K +++   +N++ I   +F   TEK G     VE A+ W +     I  + N I   +
Sbjct: 113 GIKAFVEYLNKNKTPIHPNVFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRD 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
           GGTH +G R A+TR +  Y +      K  +S   DD      
Sbjct: 170 GGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLT 212


>gi|52546466|dbj|BAD51616.1| DNA gyrase subunit B [Burkholderia plantarii]
 gi|52546472|dbj|BAD51619.1| DNA gyrase subunit B [Burkholderia plantarii]
 gi|52546474|dbj|BAD51620.1| DNA gyrase subunit B [Burkholderia plantarii]
          Length = 267

 Score =  133 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 86/276 (31%), Positives = 133/276 (48%), Gaps = 27/276 (9%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKV 199
           GGLHGVG+S VNALS  L + V R       +F RG+             +SP+E   + 
Sbjct: 1   GGLHGVGVSCVNALSSWLRLVVRRNGRKHFMEFHRGVAQNRVLETRDGVEVSPMEVVGET 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            N RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E      
Sbjct: 61  EN-RGTEVHFMADPTIFGT-VEYHYDILAKRIRELSFLNNGVRIRLTDQRSGKEDD---- 114

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              F F GG+K +++   + ++++   IF    EK+G     VE A+ W +     +  +
Sbjct: 115 ---FAFVGGVKGFVEYINKTKTVLHPTIFHIIGEKEGV---GVEVAMQWNDSYNENVLCF 168

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + E
Sbjct: 169 TNNIPQRDGGTHLTGLRAAMTRVINKYIVDNEIAKKAKVETSGDDMREGLSCVLSVKVPE 228

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
           P+F+ QTK KLVS + +  VE  +    + +L++ P
Sbjct: 229 PKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETP 264


>gi|52546460|dbj|BAD51613.1| DNA gyrase subunit B [Burkholderia plantarii]
          Length = 267

 Score =  133 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 86/277 (31%), Positives = 133/277 (48%), Gaps = 27/277 (9%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKV 199
           GGLHGVG+S VNALS  L + V R       +F RG+             +SP+E   + 
Sbjct: 1   GGLHGVGVSCVNALSSWLRLVVRRNGRKHFMEFHRGVAQNRVLETRDGVEVSPMEVVGET 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            N RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E      
Sbjct: 61  EN-RGTEVHFMADPTIFGT-VEYHYDILAKRIRELSFLNNGVRIRLTDQRSGKEDD---- 114

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              F F GG+K +++   + ++++   IF    EK+G     VE A+ W +     +  +
Sbjct: 115 ---FAFVGGVKGFVEYINKTKTVLHPTIFHIIGEKEGV---GVEVAMQWNDSYNENVLCF 168

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + E
Sbjct: 169 TNNIPQRDGGTHLTGLRAAMTRVINKYIVDNEIAKKAKVETSGDDMREGLSCVLSVKVPE 228

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
           P+F+ QTK KLVS + +  VE  +    + +L++ P 
Sbjct: 229 PKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPN 265


>gi|146263024|gb|ABQ15282.1| GyrB [Yersinia aldovae]
          Length = 206

 Score =  133 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 60/213 (28%), Positives = 104/213 (48%), Gaps = 12/213 (5%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS++L + + R   +  Q +  G+P +PL+   +     GT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYKMGVPQAPLKMVGET-ELTGTTV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F    L K  +  ++L+  V      ++   E       + F++ G
Sbjct: 60  RFWPSFQTFTNNIEFQYEILAKRLRELSFLNSGVSIKLKDNRNDKE-------DHFHYEG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G++ +++   +N++ I  ++F   T K       VE A+ W +     I  + N I   +
Sbjct: 113 GIRAFVEYLNKNKNPIHPKVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRD 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359
           GGTH  G R A+TR +  Y +     +   I +
Sbjct: 170 GGTHLVGFRTAMTRTLNSYMDKEGYSKKAKISA 202


>gi|52546402|dbj|BAD51584.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546404|dbj|BAD51585.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546408|dbj|BAD51587.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546424|dbj|BAD51595.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546430|dbj|BAD51598.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|52546432|dbj|BAD51599.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|71040304|dbj|BAE16149.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|71040306|dbj|BAE16150.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|71040320|dbj|BAE16157.1| DNA gyrase subunit B [Burkholderia gladioli pv. cocovenerans]
 gi|71040322|dbj|BAE16158.1| DNA gyrase subunit B [Burkholderia gladioli pv. agaricicola]
 gi|78042242|dbj|BAE46940.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|78042246|dbj|BAE46942.1| DNA gyrase subunit B [Burkholderia gladioli]
          Length = 267

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 86/277 (31%), Positives = 130/277 (46%), Gaps = 27/277 (9%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKV 199
           GGLHGVG+S VNALS  L + V R       +F RG+             +SP+      
Sbjct: 1   GGLHGVGVSCVNALSSWLRLVVKRNGKKHFMEFHRGVAQDRVLETRDGVEVSPMAVTGDT 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            N RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E      
Sbjct: 61  EN-RGTEVHFMADPTIFGT-VEYHYDILAKRIRELSFLNNGVRIRLTDQRSGKEDD---- 114

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              F F GG+K +++   + +S++   IF    EK G     VE A+ W +     +  +
Sbjct: 115 ---FAFVGGVKGFVEYINKTKSVLHPTIFHIIGEKDGV---GVEVAMQWNDSYNENVLCF 168

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + E
Sbjct: 169 TNNIPQRDGGTHLTGLRAAMTRVINKYIVDNEIAKKAKVETSGDDMREGLSCVLSVKVPE 228

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
           P+F+ QTK KLVS + +  VE  +    + +L++ P 
Sbjct: 229 PKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPN 265


>gi|302122556|gb|ADK92946.1| topoisomerase IV subunit B [Geobacillus uzenensis]
          Length = 278

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 133/289 (46%), Gaps = 17/289 (5%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+ L VT+ R   ++ Q+F  G       +K    +K GT I F+PDP IF     F
Sbjct: 1   NALSEWLVVTIHRDGFVYRQRFEHGGKPVTTLEKIGTTDKTGTIIQFKPDPTIFSTTV-F 59

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L +  +  A+L   +K     ++           + F++  G++ ++    E + +
Sbjct: 60  DYETLSERLRESAFLLKGLKIELIDER-------TGMHDVFHYENGIEAFVAYLNEEKDV 112

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341
           +         E+ G     VE+A  + +   E   S+ N + T +GGTHE+G + A+TR 
Sbjct: 113 LHPV-VYFAGEQNGI---EVEFAFQFHDGYSENVLSFVNNVRTKDGGTHEAGAKTAMTRV 168

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397
             +YA       ++  ++   D+      ++SV I E   +F GQTK KL + + +  V+
Sbjct: 169 FNEYARRVGLLKEKDKNLEGTDIREGLSAVVSVRIPEHLLQFEGQTKGKLGTSEXRSAVD 228

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
             + +   ++L +NP  +  L++  I   + R   RK RE  R    RK
Sbjct: 229 AVVSEQLMYFLQENPDVSAMLIKKAIRAYQAREAARKAREEARSGKKRK 277


>gi|190148822|gb|ACE63386.1| DNA gyrase B subunit [Streptomonospora halophila]
          Length = 321

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 96/320 (30%), Positives = 162/320 (50%), Gaps = 10/320 (3%)

Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248
           P++PL + E+     GT+ TF  D  IF     +    L +  Q  A+L+  +      +
Sbjct: 8   PVAPLSRDEETAE-TGTQTTFWADDSIFETTT-YSFETLARRMQEMAFLNKGLSITIRDE 65

Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH-RGTVEWAIA 307
           +        P  + +++  G+  ++      +    + I   + E +G     +++W  +
Sbjct: 66  RR-EFTGDTPLVQTYHYENGISDFVAHINTTKDPAHATIIGFEEEGEGISAEISMQWNQS 124

Query: 308 WCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMIS 365
           +      + ++ NTI T EGGTHE G R ALT  + +YA   +   ++  ++  DD+   
Sbjct: 125 FT---SSVHTFANTINTAEGGTHEEGFRTALTSVVNRYAREQKLLREKDDNLTGDDIREG 181

Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425
              I+SV + +P+F GQTKTKL + +A+  V+    +    +  +NP EA  ++    + 
Sbjct: 182 LTAIISVKLADPQFEGQTKTKLGNTEAKSFVQRVTHEHLRDWFERNPGEAKDIVTKASQA 241

Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484
           +  R+  R+ R+   RKT +    LPGKL+DC       +E++IVEGDSAGGSAK  R+ 
Sbjct: 242 ARARIAARQARDLTRRKTLLESTSLPGKLSDCQSTEPEKSEVYIVEGDSAGGSAKGGRDP 301

Query: 485 SNQAVLPLRGKILNVASAGS 504
             QA+LP+RGKILNV  +  
Sbjct: 302 HYQAILPIRGKILNVEKSRI 321


>gi|223674706|gb|ACN13049.1| DNA gyrase subunit B [Erwinia billingiae]
          Length = 218

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 116/229 (50%), Gaps = 14/229 (6%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS++L +T+ R+  + +Q +  G+P +PL    +  +  GTR+ F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLELTIRREGKVHNQIYVHGVPQAPLHVTGET-DLTGTRVRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P  + F +   F+   L K  +  ++L+  V       ++         ++ +++ GG+
Sbjct: 60  WPSHQTFTNVTDFEYEILAKRLRELSFLNSGVSIKLEDKRDA-------RQDHYHYEGGI 112

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K +++   +N++ I   +F   TEK G     VE A+ W +     I  + N I   +GG
Sbjct: 113 KAFVEYLNKNKTPIHPNVFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGG 169

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375
           TH  G R A+TR +  Y +      K  +S   DD     + ++SV + 
Sbjct: 170 THLVGFRTAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVP 218


>gi|281331982|emb|CAZ39965.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 252

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 79/261 (30%), Positives = 134/261 (51%), Gaps = 13/261 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS +L V V +  + + Q+FS G  ++ L K E     RGT + F
Sbjct: 1   VSGGLHGVGVSVVNALSQKLLVDVFQNGSHYQQEFSNGAAVTALAKLEATTK-RGTTVRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P    F D   F    L +  +  ++L+  VK   + ++          +++F++ GG+
Sbjct: 60  WPSTVAFHDNVEFHYDILARRLRELSFLNSGVKIVLADERGD------GRRDDFHYEGGI 113

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           +++++   + ++ +   + +   E  G     V+ A+ W +     +  + N I   +GG
Sbjct: 114 RSFVEHLAQLKTPLHPNVISVTGEHNGI---VVDVALQWTDSYQETMYCFTNNIPQKDGG 170

Query: 329 THESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  Y E     +   I++  DD+    + +LSV + +P F+ QTK K
Sbjct: 171 THLAGFRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEK 230

Query: 387 LVSLDAQRTVENALRDPFDHY 407
           LVS D +  VENA     + +
Sbjct: 231 LVSSDVRPAVENAFGARLEEF 251


>gi|52546388|dbj|BAD51577.1| DNA gyrase subunit B [Burkholderia gladioli]
          Length = 267

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 85/277 (30%), Positives = 130/277 (46%), Gaps = 27/277 (9%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKV 199
           GGLHGVG+S VNALS  L + V R       +F RG+             +SP+      
Sbjct: 1   GGLHGVGVSCVNALSSWLRLVVTRNGKKHFMEFHRGVAQDRVLETRDGVEVSPMAVTGDT 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            N RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E      
Sbjct: 61  EN-RGTEVHFMADPTIFGT-VEYHYDILAKRIRELSFLNNGVRIRLTDQRSGKEDD---- 114

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              F F GG+K +++   + ++++   IF    EK G     VE A+ W +     +  +
Sbjct: 115 ---FAFVGGVKGFVEYINKTKTVLHPTIFHIIGEKDGV---GVEVAMQWNDSYNENVLCF 168

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + E
Sbjct: 169 TNNIPQRDGGTHLTGLRAAMTRVINKYIVDNEIAKKAKVETSGDDMREGLSCVLSVKVPE 228

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
           P+F+ QTK KLVS + +  VE  +    + +L++ P 
Sbjct: 229 PKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPN 265


>gi|218937739|gb|ACL13029.1| DNA gyrase subunit B [Lactobacillus delbrueckii subsp. indicus]
          Length = 310

 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 104/318 (32%), Positives = 168/318 (52%), Gaps = 13/318 (4%)

Query: 187 GIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
           G  +  L++   V   + GT + F PDP IF +   FD   L    +  A+L+  +K  +
Sbjct: 1   GRVVEELKEVGTVPLTEHGTIVHFWPDPNIFTETTVFDDKILKNRIRELAFLNKGLKLTF 60

Query: 246 SCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
           +  ++        E + ++F GG+K Y+      + ++  E    + + +G     VE +
Sbjct: 61  TDKRKD-----TAETDVYHFEGGIKEYVSFLNRGQEVLFDEPIYVEGKYEGI---DVEVS 112

Query: 306 IAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDL 362
           + +       + ++ N I T EGG HE+G + ALTR +  YA   +  +    ++  +D+
Sbjct: 113 LQYTTGYKTTLMTFANNIHTYEGGMHEAGFKTALTRVVNDYAHKAKLLKENDDNLSGEDI 172

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW- 421
                 ++SV    P+F GQTKTKL + DA+  V+ A  + F  +L++NP  A K++E  
Sbjct: 173 REGMTAVISVKHPNPQFEGQTKTKLGNSDARTAVDRAFSETFSTFLMENPQVARKIVEKG 232

Query: 422 VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481
            +        +R +    +K+ +    LPGKLAD + N  + +ELFIVEGDSAGGSAKQ 
Sbjct: 233 QLAERARVAAKRAREVTRKKSGLEIANLPGKLADNTSNDPNXSELFIVEGDSAGGSAKQG 292

Query: 482 RNRSNQAVLPLRGKILNV 499
           R+R  QA+LP+RGKILNV
Sbjct: 293 RSRLTQAILPIRGKILNV 310


>gi|145631754|ref|ZP_01787515.1| DNA gyrase subunit B [Haemophilus influenzae R3021]
 gi|144982615|gb|EDJ90161.1| DNA gyrase subunit B [Haemophilus influenzae R3021]
          Length = 343

 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/103 (39%), Positives = 68/103 (66%), Gaps = 1/103 (0%)

Query: 507 IRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565
           + ++Q++  L+ ALGC   R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +
Sbjct: 1   MLSSQEVGTLITALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPE 60

Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608
           LIE+ ++++  PPL+++ +G +  Y  D +  ++        G
Sbjct: 61  LIERGYVYIAQPPLYKVKKGKQERYIKDADEMEQYELTLALDG 103



 Score =  130 bits (327), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 8/104 (7%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K     +    ++++E   K  +  +E+ R+KGLGEM A QL ET MD N R +L
Sbjct: 247 VIRGEKVQPVRN---FEQVVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRML 303

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R +FI+  A    ++ 
Sbjct: 304 KVSIKDAV----AADQLFTTLMGDEVEPRREFIELNALRA-NLD 342


>gi|169248029|gb|ACA51798.1| DNA gyrase subunit B [Aliivibrio logei]
          Length = 315

 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 108/322 (33%), Positives = 156/322 (48%), Gaps = 13/322 (4%)

Query: 185 SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244
             G P +PL               +  D         F    L K  +  ++L+  V   
Sbjct: 3   CHGEPQAPLAVVGTTDTTGTKIRFWPSDQT--FTNVEFVYEILAKRLRELSFLNSGVSII 60

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304
               +E        + + F F GG++ ++     N++ +  +IF   +E+K      VE 
Sbjct: 61  LQDMRE------EDKSDHFMFEGGIQAFVTHLNRNKTPVHQKIFYFDSERK-EDGIVVEV 113

Query: 305 AIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDD 361
           A+ W +     I  Y N I   +GG H SG R ALTR +  + +      K   S   DD
Sbjct: 114 AMQWNDSYQENIFCYTNNIPQRDGGAHLSGFRSALTRTLNSFMDKEGFSKKAKSSASGDD 173

Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421
                  ++SV + +P+F+ QTK KLVS + +  VE+A+ +    +L +NP EA  +   
Sbjct: 174 AREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLAEFLAENPGEAKMVCSK 233

Query: 422 VIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
           +I+ +  R   RK R    RK A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ
Sbjct: 234 IIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQ 293

Query: 481 ARNRSNQAVLPLRGKILNVASA 502
            RNR NQA+LPL+GKILNV  A
Sbjct: 294 GRNRKNQAILPLKGKILNVEKA 315


>gi|331029405|gb|AEC49852.1| DNA gyrase beta subunit [Bradyrhizobium sp. SEMIA 6395]
          Length = 231

 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 75/240 (31%), Positives = 122/240 (50%), Gaps = 10/240 (4%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD ++Y++SGGLHGVG+SVVNALS +L + + R +     +F+ G  ++PL+       +
Sbjct: 1   FDPNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHGDAVAPLKVVGDAPGR 60

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
           RGT +TF    + F +   +D A L    +  A+L+  V    S  +   EK      EE
Sbjct: 61  RGTEVTFLASTETFKN-VEYDFATLEHRLRELAFLNSGVNIILSDMRHAVEKR-----EE 114

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNT 321
            ++ GG++ +++    N+  +       ++E  G     VE A+ W +   E    + N 
Sbjct: 115 MHYSGGVEEFVKYLDRNKKALVPAPIMVRSEANGI---GVEAALWWNDSYHENVLCFTNN 171

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
           I   +GGTH +G R ALTR +  YAE    K  I++  DD       +LSV + +P+F+ 
Sbjct: 172 IPQRDGGTHLAGFRGALTRQVNGYAEANAKKEKIALTGDDCREGLTAVLSVKVPDPKFSS 231


>gi|302122554|gb|ADK92945.1| topoisomerase IV subunit B [Geobacillus uzenensis]
          Length = 279

 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 78/290 (26%), Positives = 134/290 (46%), Gaps = 17/290 (5%)

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
            NALS+ L VT+ R   ++ Q+F  G       +K    +K GT I F+PDP IF     
Sbjct: 1   ANALSEWLVVTIHRDGFVYRQRFEHGGKPVTTLEKIGTTDKTGTIIQFKPDPTIFSTTV- 59

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L +  +  A+L   +K     ++           + F++  G++ ++    E + 
Sbjct: 60  FDYETLSERLRESAFLLKGLKIELIDER-------TGMHDVFHYENGIEAFVAYLNEEKD 112

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340
           ++         E+ G     VE+A  + +   E   S+ N + T +GGTHE+G + A+TR
Sbjct: 113 VLHPV-VYFAGEQNGI---EVEFAFQFHDGYSENVLSFVNNVRTKDGGTHEAGAKTAMTR 168

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA       ++  ++   D+      ++SV I E   +F GQTK KL + +A+  V
Sbjct: 169 VFNEYARRVGLLKEKDKNLEGTDIREGLSAVVSVRIPEHLLQFEGQTKGKLGTSEARSAV 228

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
           +  + +   ++L +NP  +  L++  I   + R   RK RE  R    RK
Sbjct: 229 DAVVSEQLMYFLQENPDVSAMLIKKAIRAYQAREXARKAREEARSGKKRK 278


>gi|71040312|dbj|BAE16153.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|71040314|dbj|BAE16154.1| DNA gyrase subunit B [Burkholderia gladioli]
 gi|71040316|dbj|BAE16155.1| DNA gyrase subunit B [Burkholderia gladioli]
          Length = 267

 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 86/277 (31%), Positives = 130/277 (46%), Gaps = 27/277 (9%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKV 199
           GGLHGVG+S VNALS  L + V R       +F RG+             +SP+      
Sbjct: 1   GGLHGVGVSCVNALSSWLRLVVKRNGKKHFMEFHRGVAQDRVLETRDGVEVSPMAITGDT 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            N RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E      
Sbjct: 61  EN-RGTEVHFMADPTIFGT-VEYHYDILAKRIRELSFLNNGVRIRLTDQRSGKEDD---- 114

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              F F GG+K +++   + +S++   IF    EK G     VE A+ W +     +  +
Sbjct: 115 ---FAFVGGVKGFVEYINKTKSVLHPTIFHIIGEKDGV---GVEVAMQWNDSYNENVLCF 168

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + E
Sbjct: 169 TNNIPQRDGGTHLTGLRAAMTRVINKYIVDNEIAKKAKVETSGDDMREGLSCVLSVKVPE 228

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
           P+F+ QTK KLVS + +  VE  +    + +L++ P 
Sbjct: 229 PKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPN 265


>gi|226326914|ref|ZP_03802432.1| hypothetical protein PROPEN_00774 [Proteus penneri ATCC 35198]
 gi|225204751|gb|EEG87105.1| hypothetical protein PROPEN_00774 [Proteus penneri ATCC 35198]
          Length = 225

 Score =  133 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 4/89 (4%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656
            ++ LE   K  +  + + R+KGLGEM   QL ET M+ + R +++V +   +     T 
Sbjct: 140 FEEALEWLTKESRRGLAVQRYKGLGEMNPEQLWETTMNPDTRRMMQVTVKDAI----ATD 195

Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685
           +    LMG   + R  FI+E A    ++ 
Sbjct: 196 ELFTTLMGDSVEPRRAFIEENALKAANID 224


>gi|295147504|gb|ADF80583.1| DNA topoisomerase IV subunit B [Geobacillus sp. 46]
          Length = 296

 Score =  133 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 79/290 (27%), Positives = 136/290 (46%), Gaps = 17/290 (5%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS+ L VT+ R   ++ Q+F  G       +K    +K GT I F+PDP IF     F+
Sbjct: 1   ALSEWLVVTIHRDGFMYRQRFEHGGRPVTTLEKIGTTDKTGTIIHFKPDPTIFSTTV-FN 59

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L +  +  A+L   +K     ++          +E F++  G++ ++    E + ++
Sbjct: 60  YETLSERLRESAFLLKGLKIELVDER-------TGMQEVFHYENGIEAFVAYLNEEKDVL 112

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGI 342
                    E+ G     VE+A  + +   E   S+ N + T +GGTHE+G + A+TR  
Sbjct: 113 HPV-VYFSGEQNGI---EVEFAFQFHDGYSENVLSFVNNVRTKDGGTHEAGAKTAMTRVF 168

Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVEN 398
            +YA       ++  ++   D+      I+SV I E   +F GQTK KL + +A+  V+ 
Sbjct: 169 NEYARRVGLLKEKDKNLEGTDIREGLSAIVSVRIPEHLLQFEGQTKGKLGTSEARSAVDA 228

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR 448
            + +   ++L +NP  +T L++  I   + R   RK RE  R    RK +
Sbjct: 229 VVSEQLTYFLQENPDVSTMLIKKAIRAYQAREAARKAREEARSGKKRKGK 278


>gi|223674710|gb|ACN13051.1| DNA gyrase subunit B [Erwinia billingiae]
          Length = 214

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 112/223 (50%), Gaps = 14/223 (6%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS++L +T+ R+  + +Q +  G+P +PL    +  +  GTR+
Sbjct: 1   YKVSGGLHGVGVSVVNALSEKLELTIRREGKVHNQIYVHGVPQAPLHVTGET-DLTGTRV 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F+   L K  +  ++L+  V       ++         ++ +++ G
Sbjct: 60  RFWPSHQTFTNVTDFEYEILAKRLRELSFLNSGVSIKLEDKRDA-------RQDHYHYEG 112

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K +++   +N++ I   +F   TEK G     VE A+ W +     I  + N I   +
Sbjct: 113 GIKAFVEYLNKNKTPIHPNVFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRD 169

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
           GGTH  G R A+TR +  Y +      K  +S   DD      
Sbjct: 170 GGTHLVGFRTAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLT 212


>gi|153866177|ref|ZP_01997948.1| DNA topoisomerase II [Beggiatoa sp. SS]
 gi|152145045|gb|EDN72051.1| DNA topoisomerase II [Beggiatoa sp. SS]
          Length = 248

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 75/242 (30%), Positives = 124/242 (51%), Gaps = 15/242 (6%)

Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193
           +T LHAGGKFD ++Y++SGGLHGVG+SVVNALS+ELH+T+ R   I  Q +   +P++PL
Sbjct: 1   MTVLHAGGKFDTNSYKVSGGLHGVGVSVVNALSEELHLTIYRDGKIHEQTYRDSVPVAPL 60

Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253
                  +K G+ I F+P  K F +   +    L    +  ++L+  V+     ++   +
Sbjct: 61  VVTGD-SDKTGSEIRFKPSAKTFTN-TEYHYDILANRLRELSFLNAGVRIRLIDERTAKD 118

Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312
                    F   GG++++++    N++++   +F   ++K      +VE A+ W +   
Sbjct: 119 TV-------FEDEGGIRSFVELLNRNKTVLHDSVFYLLSQKDDI---SVEVAMQWNDSYH 168

Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370
                + N I   +GGTH +G R A+TR    Y E      K  +S   DD+      +L
Sbjct: 169 ENFFCFTNNIPQRDGGTHLAGFRGAMTRTFNNYLEREGFLKKAKVSTSGDDVREGLTAVL 228

Query: 371 SV 372
           SV
Sbjct: 229 SV 230


>gi|284929881|gb|ADC30026.1| DNA gyrase subunit B [Oscillatoria sp. PCC 8954]
          Length = 241

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 108/223 (48%), Gaps = 1/223 (0%)

Query: 131 EIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL 190
           E +LT LHAGG F    Y++SGGLHGVG+SVVNALS+ L VTV R    +SQ+F RG P 
Sbjct: 1   ETVLTVLHAGGIFGGGGYKVSGGLHGVGVSVVNALSEWLEVTVFRDKKEYSQRFERGTPA 60

Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250
           + L  K     + GT ++F PD  IF     FD   +    +  AYL+  VK   + ++ 
Sbjct: 61  TELTSKPIKEARTGTSVSFLPDTSIFTTGIEFDCDTIASRLRELAYLNAGVKITLTDNRL 120

Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                  P  E + + GG++ Y+     ++  +  +I     E+    +  V        
Sbjct: 121 ELLNREAPRVETYCYEGGIREYIAYMNNDKQPLHEDIIYTCGERSNV-QIEVALQWCTDA 179

Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR 353
            +  +  + N I T +GGTH  GL+  LTR +   A      +
Sbjct: 180 YSDTVLGFANNIRTIDGGTHLEGLKTVLTRTLNAIARKRNKLK 222


>gi|124039607|dbj|BAF45399.1| DNA gyrase beta subunit [uncultured bacterium]
 gi|124039611|dbj|BAF45401.1| DNA gyrase beta subunit [uncultured bacterium]
          Length = 314

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 112/326 (34%), Positives = 172/326 (52%), Gaps = 16/326 (4%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+   V V R   I+ Q + RG P +PLE+   V    GT   F  D +IF     +
Sbjct: 1   NALSEWTTVKVRRNGKIYQQSYLRGKPSTPLEEVG-VSEGSGTTTIFMADSQIFSTT-EY 58

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L    +  AYL+  ++     +K   E+        +YF GG+  +++    NR +
Sbjct: 59  DFETLTDRLREIAYLNKGLEVYIYDEKSDQERT-------YYFEGGITGFVRHLNRNREV 111

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRG 341
              +      +   T    +E AI + +   +   ++ N + T +GGTH +G R ALTR 
Sbjct: 112 RHRQPIYITKKSDSTI---LEVAIQYNDGYSDSTLTFANCVNTVDGGTHLTGFRSALTRA 168

Query: 342 IKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
              YA  ++  +    +++ DD+    V I+SV + EP+F GQTK KL +++ +  VE+A
Sbjct: 169 FNDYAHKSKFLKDTDPNLMGDDVREGIVAIVSVKLPEPQFEGQTKGKLGNIEIKSFVESA 228

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    YL ++P +  ++LE  I  ++ R   RK R+ + RK+A+    LPGKLADCS+
Sbjct: 229 VAEQLSLYLEEHPDDTKRILEKCITAAKAREAARKARDLIIRKSALDTGTLPGKLADCSE 288

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNR 484
             A   ELF+VEGDSAGGSAKQ RNR
Sbjct: 289 RDASLCELFLVEGDSAGGSAKQGRNR 314


>gi|194472740|ref|ZP_03078724.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194459104|gb|EDX47943.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
          Length = 76

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 54/78 (69%), Gaps = 3/78 (3%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I +L GLEPVR RPGMY   TD    +HL  EVIDN++DE +AG+A  ++V 
Sbjct: 2   TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 101 LDGNGFLTVVDNGRGIPV 118
           L  +  L V+D+GRG+PV
Sbjct: 59  LHADQSLEVIDDGRGMPV 76


>gi|71040318|dbj|BAE16156.1| DNA gyrase subunit B [Burkholderia gladioli]
          Length = 267

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 86/277 (31%), Positives = 130/277 (46%), Gaps = 27/277 (9%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKV 199
           GGLHGVG+S VNALS  L + V R       +F RG+             +SP+      
Sbjct: 1   GGLHGVGVSCVNALSSWLRLVVKRNGKKHFMEFHRGVAQDRVLETRDGVEVSPMAVTGDT 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            N RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E      
Sbjct: 61  EN-RGTEVHFMADPTIFGT-VEYHYDILAKRIRELSFLNNGVRIRLTDQRSGKEDD---- 114

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              F F GG+K +++   + +S++   IF    EK G     VE A+ W +     +  +
Sbjct: 115 ---FAFVGGVKGFVEYINKTKSVLHPTIFHIIGEKDGV---GVEMAMQWNDSYNENVLCF 168

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + E
Sbjct: 169 TNNIPQRDGGTHLTGLRAAMTRVINKYIVDNEIAKKAKVETSGDDMREGLSCVLSVKVPE 228

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
           P+F+ QTK KLVS + +  VE  +    + +L++ P 
Sbjct: 229 PKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPN 265


>gi|146424621|dbj|BAF62119.1| DNA gyrase B subunit [Rhodopseudomonas lichen]
          Length = 236

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 78/242 (32%), Positives = 119/242 (49%), Gaps = 10/242 (4%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD ++Y++SGGLHGVG+SVVNALS +L + V R       +F+ G  ++PL      
Sbjct: 1   GGKFDQNSYKVSGGLHGVGVSVVNALSSKLILRVWRNGKEHLIEFAHGDAVAPLSVVGDA 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
             +RGT +TF   P+ F     +D A L    +  A+L+  V    S  +   EK     
Sbjct: 61  NGRRGTEVTFFASPETF-THIEYDFATLEHRLRELAFLNSGVNILLSDLRHAVEKR---- 115

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSY 318
            EE  + GG+  +++    N+  I         +  G     VE A+ W +   E    +
Sbjct: 116 -EEMRYEGGVTEFVKYLDRNKKPIVPSPIVVAADLNGI---AVEAALWWNDTYHENVLCF 171

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPE 378
            N I   +GGTH +G R ALTR +  YA+    K  +++  DD       +LSV + +P+
Sbjct: 172 TNNIPQRDGGTHLAGFRAALTRQLTGYADNNAKKEKVALTGDDCREGLTAVLSVKVPDPK 231

Query: 379 FA 380
           F+
Sbjct: 232 FS 233


>gi|169248038|gb|ACA51802.1| DNA gyrase subunit B [Aliivibrio wodanis]
          Length = 310

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 102/296 (34%), Positives = 149/296 (50%), Gaps = 11/296 (3%)

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
               +       F    L K  +  ++L+  V       +E        + + F F GG+
Sbjct: 22  FWPSEQTFTNVEFVYDILAKRLRELSFLNSGVSIILQDMRE------EDKSDHFMFEGGI 75

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           + ++     N++ +  +IF   +E+K      VE A+ W +     I  Y N I   +GG
Sbjct: 76  QAFVTHLNRNKTPVHQKIFYFDSERK-EDGIVVEVAMQWNDSYQENIFCYTNNIPQRDGG 134

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
            H SG R ALTR +  + +      K   S   DD       ++SV + +P+F+ QTK K
Sbjct: 135 AHLSGFRSALTRTLNSFMDKEGFSKKAKSSASGDDAREGLTAVVSVKVPDPKFSSQTKDK 194

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIR 445
           LVS + +  VE+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK A+ 
Sbjct: 195 LVSSEVKSAVESAMNEKLAEFLAENPGEAKMVCSKIIDAARAREAARKAREMTRRKGALD 254

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501
              LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV  
Sbjct: 255 IAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 310


>gi|308153098|dbj|BAJ22138.1| DNA gyrase subunit B [Streptomyces vitaminophilus]
          Length = 321

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 80/292 (27%), Positives = 135/292 (46%), Gaps = 14/292 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
              Y +SGGLHGVG+SVVNALS  L V +      ++Q +  G P SPL + E      G
Sbjct: 1   GGGYAVSGGLHGVGLSVVNALSTRLSVEIWTDGHRWTQDYKDGAPASPLARHEATSR-TG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------EIAEKY 255
           T +TF  D  +F     +  A L +  Q  A+L+  +    + ++           A+  
Sbjct: 60  TSLTFWADGGVFET-TEYSFATLARRFQEMAFLNRGLTLTLTDERPSARATAAANAADSD 118

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE- 314
              +   + + GG+  ++      +             +      + E A+ W  +  + 
Sbjct: 119 PAAKTVSYRYDGGITDFVAHLNARKGEPVHPSVITIAAEDTERLLSAEVALQWSGQYTDS 178

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSV 372
           + SY N I T EGGTHE G R ALT  + +YA   +   ++  ++  +D+      I+SV
Sbjct: 179 VYSYANAIHTHEGGTHEEGFRAALTTVVNRYAREKKLLREKDANLSGEDVREGLTAIISV 238

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            + EP+F GQTKTKL + +A+  ++  + +    +  +NP EA  ++   I+
Sbjct: 239 KLGEPQFEGQTKTKLGNTEARTFLQKIVHEHLTDWFDRNPNEAADIVRKAIQ 290


>gi|331029389|gb|AEC49844.1| DNA gyrase beta subunit [Bradyrhizobium sp. SEMIA 6002]
 gi|331029395|gb|AEC49847.1| DNA gyrase beta subunit [Bradyrhizobium sp. SEMIA 6144]
          Length = 228

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 75/237 (31%), Positives = 120/237 (50%), Gaps = 10/237 (4%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS +L + + R +     +F+ G  ++PL+       +RGT +
Sbjct: 1   YKVSGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHGDAVAPLKVVGDAPGRRGTEV 60

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
           TF    + F +   +D A L    +  A+L+  V    S  +   EK      EE ++ G
Sbjct: 61  TFLASTETFKN-VEYDFATLEHRLRELAFLNSGVNIILSDMRHAVEKR-----EEMHYSG 114

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDE 326
           G++ +++    N+  +       ++E  G     VE A+ W +   E    + N I   +
Sbjct: 115 GVEEFVKYLDRNKKALVPAPIMVRSEANGI---GVEAALWWNDSYHENVLCFTNNIPQRD 171

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQT 383
           GGTH +G R ALTR +  YAE    K  I++  DD       +LSV + +P+F+ QT
Sbjct: 172 GGTHLAGFRGALTRQVNGYAEANAKKEKIALTGDDCREGLTAVLSVKVPDPKFSSQT 228


>gi|52546476|dbj|BAD51621.1| DNA gyrase subunit B [Burkholderia plantarii]
          Length = 267

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 85/277 (30%), Positives = 132/277 (47%), Gaps = 27/277 (9%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKV 199
           GGLHGVG+S VNALS  L + V R       +F RG+             +SP+E   + 
Sbjct: 1   GGLHGVGVSCVNALSSWLRLVVRRNGKKHFMEFHRGVAQNRVLETRDGVEVSPMEVVGET 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
              RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E      
Sbjct: 61  -EHRGTEVHFMADPTIFGT-VEYHYDILAKRIRELSFLNNGVRIRLTDQRSGKEDD---- 114

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              F F GG+K +++   + +S++   IF    EK G     VE A+ W +     +  +
Sbjct: 115 ---FAFVGGVKGFVEYINKTKSVLHPTIFHIIGEKDGV---GVEVAMQWNDSYNENVLCF 168

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GG+H +GLR A+TR I KY    +   K  +    DD+      +LSV + E
Sbjct: 169 TNNIPQRDGGSHLTGLRAAMTRVINKYIVDNEIARKAKVETSGDDMREGLSCVLSVKVPE 228

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
           P+F+ QTK KLVS + +  VE+ +    + +L++ P 
Sbjct: 229 PKFSSQTKDKLVSSEVRAPVEDVVAKALEEFLLETPN 265


>gi|257062515|gb|ACV40270.1| DNA gyrase subunit B [Yersinia mollaretii]
          Length = 205

 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 60/212 (28%), Positives = 104/212 (49%), Gaps = 12/212 (5%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS++L + + R+  +  Q +  G+P +PL+   +  +  GT + 
Sbjct: 1   KVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DLTGTTVR 59

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F P  + F +   F    L K  +  ++L+  V       +   E       + F++ GG
Sbjct: 60  FWPSFETFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDKRNDRE-------DHFHYEGG 112

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           +K +++   +N++ I  ++F   T K       VE A+ W +     I  + N I   +G
Sbjct: 113 IKAFVEYLSKNKNPIHPKVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDG 169

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAISIIS 359
           GTH  G R A+TR +  Y +     +   I +
Sbjct: 170 GTHLVGFRTAMTRTLNSYMDKEGYSKKAKISA 201


>gi|52546440|dbj|BAD51603.1| DNA gyrase subunit B [Burkholderia plantarii]
          Length = 267

 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 85/277 (30%), Positives = 131/277 (47%), Gaps = 27/277 (9%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKV 199
           GGLHGVG+S VNALS  L + V R       +F RG+             +SP+E   + 
Sbjct: 1   GGLHGVGVSCVNALSSWLRLVVRRNGKKHFMEFHRGVAQNRVLETRDGVEVSPMEVVGET 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
              RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E      
Sbjct: 61  -EHRGTEVHFMADPTIFGT-VEYHYDILAKRIRELSFLNNGVRIRLTDQRSGKEDD---- 114

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              F F GG+K +++   + +S++   IF    EK G     VE A+ W +     +  +
Sbjct: 115 ---FAFVGGVKGFVEYINKTKSVLHPTIFHIIGEKDGV---GVEVAMQWNDSYNENVLCF 168

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GG+H +GLR A+TR I KY    +   K  +    DD+      +LSV + E
Sbjct: 169 TNNIPQRDGGSHLTGLRAAMTRVINKYIVDNEIARKAKVETSGDDMREGLSCVLSVKVPE 228

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
           P+F+ QTK KLVS + +  VE  +    + +L++ P 
Sbjct: 229 PKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPN 265


>gi|52546470|dbj|BAD51618.1| DNA gyrase subunit B [Burkholderia plantarii]
          Length = 267

 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 85/277 (30%), Positives = 131/277 (47%), Gaps = 27/277 (9%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKV 199
           GGLHGVG+S VNALS  L + V R       +F RG+             +SP+E   + 
Sbjct: 1   GGLHGVGVSCVNALSSWLRLVVRRNGKKHFMEFHRGVAQNRVLETRDGVEVSPMEVVGET 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
              RGT + F  DP IFG    +    L K  +  ++L+  V+   +  +   E      
Sbjct: 61  -EHRGTEVHFMADPTIFGT-VEYHYDILAKRIRELSFLNNGVRIRLTDQRSGKEDD---- 114

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              F F GG+K +++   + +S++   IF    EK G     VE A+ W +     +  +
Sbjct: 115 ---FAFVGGVKGFVEYINKTKSVLHPTIFHIIGEKDGV---GVEVAMQWNDSYNENVLCF 168

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GG+H +GLR A+TR I KY    +   K  +    DD+      +LSV + E
Sbjct: 169 TNNIPQRDGGSHLTGLRAAMTRVINKYIVDNEIARKAKVETSGDDMREGLSCVLSVKVPE 228

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
           P+F+ QTK KLVS + +  VE  +    + +L++ P 
Sbjct: 229 PKFSSQTKDKLVSSEVRAPVEELVAKALEEFLLETPN 265


>gi|219963088|gb|ACL68132.1| DNA gyrase subunit B [Xenorhabdus poinarii]
 gi|219963090|gb|ACL68133.1| DNA gyrase subunit B [Xenorhabdus poinarii]
          Length = 287

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 85/298 (28%), Positives = 142/298 (47%), Gaps = 15/298 (5%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            +  Q +  G+P SPL+       + GT + F P  + F     F+   L K  +  ++L
Sbjct: 1   KVHEQTYHLGVPQSPLKVVGDT-EQTGTTVRFWPSMETFKVNTEFEYDILAKRLRELSFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V       +  AE       + F++ GG+K +++    N++ I   +F   TEK G 
Sbjct: 60  NSGVSIRLVDKRTNAE-------DHFHYEGGIKAFVEYLSRNKNPIHPNVFYFSTEKDGI 112

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRA 354
               VE ++ W +     I  + N I   +GGTH  G R A+TR +  Y +      K  
Sbjct: 113 ---GVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSK 169

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +
Sbjct: 170 VSATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETQMNEKLVEYLLENPND 229

Query: 415 ATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           A  ++  +I+        R+ +    RK A+    LPGKLADC +     +EL++VEG
Sbjct: 230 AKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPARSELYLVEG 287


>gi|219963054|gb|ACL68115.1| DNA gyrase subunit B [Xenorhabdus doucetiae]
          Length = 287

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 85/298 (28%), Positives = 142/298 (47%), Gaps = 15/298 (5%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            +  Q +  G+P SPL+       + GT + F P  + F     F+   L K  +  ++L
Sbjct: 1   KVHEQTYHMGVPQSPLKVVGDT-EQTGTTVRFWPSMETFKLNTEFEYDILAKRLRELSFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V       +  AE       + F++ GG+K +++    N++ I   +F   TEK G 
Sbjct: 60  NSGVSIRLVDKRTNAE-------DHFHYEGGIKAFVEFLSRNKNPIHPNVFYFSTEKDGI 112

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRA 354
               VE ++ W +     I  + N I   +GGTH  G R A+TR +  Y +      K  
Sbjct: 113 ---GVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSK 169

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +
Sbjct: 170 VSATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPND 229

Query: 415 ATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           A  ++  +I+        R+ +    RK A+    LPGKLADC +     +EL++VEG
Sbjct: 230 AKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|323388482|gb|ADX60530.1| DNA gyrase subunit B [Geobacillus sp. NTU 03]
          Length = 264

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 98/267 (36%), Positives = 151/267 (56%), Gaps = 7/267 (2%)

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
            ++     K E+ + GG+++Y++   + R ++  E      E+ G     VE A+ + + 
Sbjct: 1   TDERVDSRKNEYVYEGGIRSYVRHLNQTREVLHEEPIYIAGERDGI---AVEIALQYNDG 57

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVG 368
               I S+ N I T EGGTHESG ++ALTR I  YA   Q   +   ++  +D+      
Sbjct: 58  YTSNIYSFVNNIHTHEGGTHESGFKMALTRIINDYARKQQIFKENDTNLTGEDVREGLTA 117

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSE 427
           I+S+    P+F GQTKTKL + DA+   +    + F+ +L++NP  A K++E  ++    
Sbjct: 118 IVSIKHPSPQFEGQTKTKLGNSDARTVTDAVFSEQFETFLLENPTIARKIVEKGMMAARA 177

Query: 428 ERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
               ++ +    RK+A+    LPGKLADCS      +EL++VEGDSAGGSAKQ R+R  Q
Sbjct: 178 RLAAKKARELTRRKSALEISNLPGKLADCSSRDPSISELYVVEGDSAGGSAKQGRDRHFQ 237

Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIM 514
           A+LPLRGKILNV  A  +KI +N ++ 
Sbjct: 238 AILPLRGKILNVEKARLDKILSNNEVR 264


>gi|281331662|emb|CAZ40025.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 259

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 82/267 (30%), Positives = 137/267 (51%), Gaps = 13/267 (4%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS +L V V +  + + Q+FS G  ++PL K E     RGT + F P   
Sbjct: 1   HGVGVSVVNALSQKLLVDVFQNGSHYQQEFSNGAAVTPLAKLEATTK-RGTTVRFWPSTV 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
            F D   F    L +  +  ++L+  VK   + ++          +++F++ GG++++++
Sbjct: 60  AFHDNVEFHYDILARRLRELSFLNSGVKIVLADERGD------GRRDDFHYEGGIRSFVE 113

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              + ++ +   + +   E  G     VE A+ W +     +  + N I   +GGTH +G
Sbjct: 114 HLAQLKTPLHPNVISVTGEHNGI---VVEVALQWTDSYQETMYCFTNNIPQKDGGTHLAG 170

Query: 334 LRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y E     +   I++  DD+    + +LSV + +P F+ QTK KLVS D
Sbjct: 171 FRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSD 230

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKL 418
            +  VENA     + +L +NP EA  +
Sbjct: 231 VRPAVENAFGARLEEFLQENPNEAKAI 257


>gi|257062545|gb|ACV40285.1| DNA gyrase subunit B [Yersinia intermedia]
          Length = 205

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 59/212 (27%), Positives = 103/212 (48%), Gaps = 12/212 (5%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS++L + + R   +  Q +  G+P +PL+   +  +  GT + 
Sbjct: 1   KVSGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYKMGVPQAPLKMVGET-DLTGTTVR 59

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F P  + F +   F    L K  +  ++L+  V       +   E       + F++ GG
Sbjct: 60  FWPSFQTFTNNIEFQYEILAKRLRELSFLNSGVSIKLKDKRNDRE-------DHFHYEGG 112

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           ++ +++   +N++ I  ++F   T K       VE A+ W +     I  + N I   +G
Sbjct: 113 IRAFVEYLSKNKNPIHPKVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDG 169

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAISIIS 359
           GTH  G R A+TR +  Y +     +   I +
Sbjct: 170 GTHLVGFRTAMTRTLNSYMDKEGYSKKAKISA 201


>gi|281332010|emb|CAZ39979.1| DNA gyrase subunit B [Stenotrophomonas humi]
          Length = 237

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 75/247 (30%), Positives = 128/247 (51%), Gaps = 13/247 (5%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS++L + + +    + Q++S G   SPL++ E     RGT + F
Sbjct: 1   VSGGLHGVGVSVVNALSEKLLLDIYQGGFHYQQEYSXGAIASPLKQLETSTK-RGTTLRF 59

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
            P    F D   F    L +  +  ++L+  VK     ++          +++F++ GG+
Sbjct: 60  WPSTTAFHDNVEFHYEILARRLRELSFLNSGVKIVLIDERG------EGRRDDFHYEGGI 113

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           K++++   + ++ +   + +   E  G     VE A+ W +     +  + N I   +GG
Sbjct: 114 KSFVEHLAQVKTPLHPNVISVTGEHNGI---VVEVALQWTDSYQETMYCFTNNIPQKDGG 170

Query: 329 THESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           TH +G R ALTR +  Y E     +   I++  DD+    + +LSV + +P F+ QTK K
Sbjct: 171 THLAGFRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEK 230

Query: 387 LVSLDAQ 393
           LVS D +
Sbjct: 231 LVSSDVR 237


>gi|257062541|gb|ACV40283.1| DNA gyrase subunit B [Yersinia kristensenii]
          Length = 205

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 59/212 (27%), Positives = 105/212 (49%), Gaps = 12/212 (5%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS++L + + R+  +  Q +  G+P +PL+   +  ++ GT + 
Sbjct: 1   KVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DQTGTTVR 59

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F P  + F +   F    L K  +  ++L+  V       +   E       + F++ GG
Sbjct: 60  FWPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDKRNDRE-------DHFHYEGG 112

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           ++ +++   +N++ I  ++F   T K       VE A+ W +     I  + N I   +G
Sbjct: 113 IRAFVEYLSKNKNPIHPKVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDG 169

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAISIIS 359
           GTH  G R A+TR +  Y +     +   I +
Sbjct: 170 GTHLVGFRTAMTRTLNSYMDKEGYSKKAKISA 201


>gi|146425523|emb|CAM89324.2| DNA gyrase B subunit [Brucella melitensis]
 gi|146425533|emb|CAM89315.2| DNA gyrase B subunit [Brucella melitensis]
 gi|146425543|emb|CAM89306.2| DNA gyrase B subunit [Brucella melitensis]
 gi|146425553|emb|CAM89297.2| DNA gyrase B subunit [Brucella melitensis]
 gi|146425563|emb|CAM89288.2| DNA gyrase B subunit [Brucella melitensis]
 gi|146425573|emb|CAM89279.2| DNA gyrase B subunit [Brucella melitensis]
 gi|146425583|emb|CAM89270.2| DNA gyrase B subunit [Brucella melitensis]
 gi|146425593|emb|CAM89261.2| DNA gyrase B subunit [Brucella melitensis]
 gi|146425603|emb|CAM89252.2| DNA gyrase B subunit [Brucella melitensis]
 gi|146425613|emb|CAM89243.2| DNA gyrase B subunit [Brucella melitensis]
 gi|146425623|emb|CAM89234.2| DNA gyrase B subunit [Brucella melitensis]
 gi|146425633|emb|CAM89225.2| DNA gyrase B subunit [Brucella melitensis]
 gi|146425643|emb|CAM89216.2| DNA gyrase B subunit [Brucella melitensis]
 gi|146425653|emb|CAM89207.2| DNA gyrase B subunit [Brucella melitensis]
 gi|146425663|emb|CAM89198.2| DNA gyrase B subunit [Brucella melitensis]
 gi|146425673|emb|CAM89189.2| DNA gyrase B subunit [Brucella melitensis]
 gi|146425683|emb|CAM89180.2| DNA gyrase B subunit [Brucella melitensis]
 gi|146425693|emb|CAM89171.2| DNA gyrase B subunit [Brucella melitensis]
 gi|146425703|emb|CAM89162.2| DNA gyrase B subunit [Brucella melitensis]
 gi|146425713|emb|CAM89153.2| DNA gyrase B subunit [Brucella abortus]
 gi|146425723|emb|CAM89144.2| DNA gyrase B subunit [Brucella abortus]
 gi|146425733|emb|CAM89135.2| DNA gyrase B subunit [Brucella abortus]
 gi|146425753|emb|CAM89117.2| DNA gyrase B subunit [Brucella abortus]
 gi|146425763|emb|CAM89108.2| DNA gyrase B subunit [Brucella abortus]
 gi|146425773|emb|CAM89099.2| DNA gyrase B subunit [Brucella abortus]
 gi|146425783|emb|CAM89090.2| DNA gyrase B subunit [Brucella abortus]
 gi|146425793|emb|CAM89081.2| DNA gyrase B subunit [Brucella abortus]
 gi|146425803|emb|CAM89072.2| DNA gyrase B subunit [Brucella abortus]
 gi|146425813|emb|CAM89063.2| DNA gyrase B subunit [Brucella abortus]
 gi|146425823|emb|CAM89054.2| DNA gyrase B subunit [Brucella abortus]
 gi|146425833|emb|CAM89045.2| DNA gyrase B subunit [Brucella abortus]
 gi|146425843|emb|CAM89036.2| DNA gyrase B subunit [Brucella abortus]
 gi|146425853|emb|CAM89027.2| DNA gyrase B subunit [Brucella abortus]
 gi|146425863|emb|CAM89018.2| DNA gyrase B subunit [Brucella abortus]
 gi|146425873|emb|CAM89009.2| DNA gyrase B subunit [Brucella abortus]
 gi|146425883|emb|CAM89000.2| DNA gyrase B subunit [Brucella abortus]
 gi|146425893|emb|CAM88991.2| DNA gyrase B subunit [Brucella abortus]
 gi|146425903|emb|CAM88982.2| DNA gyrase B subunit [Brucella abortus]
 gi|146425911|emb|CAM88973.2| DNA gyrase B subunit [Brucella abortus]
 gi|146426796|emb|CAM89441.2| DNA gyrase B subunit [Brucella ovis]
 gi|146426806|emb|CAM89432.2| DNA gyrase B subunit [Brucella ovis]
 gi|146426816|emb|CAM89423.2| DNA gyrase B subunit [Brucella ovis]
 gi|146426826|emb|CAM89414.2| DNA gyrase B subunit [Brucella ovis]
 gi|146426836|emb|CAM89405.2| DNA gyrase B subunit [Brucella ovis]
 gi|146426846|emb|CAM89396.2| DNA gyrase B subunit [Brucella ovis]
 gi|146426856|emb|CAM89387.2| DNA gyrase B subunit [Brucella ovis]
 gi|146426866|emb|CAM89378.2| DNA gyrase B subunit [Brucella ovis]
 gi|146426876|emb|CAM89369.2| DNA gyrase B subunit [Brucella ovis]
 gi|146426886|emb|CAM89360.2| DNA gyrase B subunit [Brucella ovis]
 gi|146426896|emb|CAM89351.2| DNA gyrase B subunit [Brucella ovis]
 gi|146426906|emb|CAM89342.2| DNA gyrase B subunit [Brucella melitensis]
 gi|146426916|emb|CAM89333.2| DNA gyrase B subunit [Brucella melitensis]
 gi|146427372|emb|CAM90323.2| DNA gyrase B subunit [Brucella sp. 5/95]
 gi|146427382|emb|CAM90314.2| DNA gyrase B subunit [Brucella sp. 59/94]
 gi|146427392|emb|CAM90305.2| DNA gyrase B subunit [Brucella sp. UK28/03-13840]
 gi|146427402|emb|CAM90296.2| DNA gyrase B subunit [Brucella sp. F7/99]
 gi|146427412|emb|CAM90287.2| DNA gyrase B subunit [Brucella sp. F10/99]
 gi|146427422|emb|CAM90278.2| DNA gyrase B subunit [Brucella sp. F9/99]
 gi|146427432|emb|CAM90269.2| DNA gyrase B subunit [Brucella sp. F8/99]
 gi|146427442|emb|CAM90260.2| DNA gyrase B subunit [Brucella sp. F6/99]
 gi|146427452|emb|CAM90251.2| DNA gyrase B subunit [Brucella sp. UK5/01]
 gi|146427462|emb|CAM90242.2| DNA gyrase B subunit [Brucella sp. UK40/99]
 gi|146427472|emb|CAM90233.2| DNA gyrase B subunit [Brucella sp. UK13/99]
 gi|146427482|emb|CAM90224.2| DNA gyrase B subunit [Brucella sp. 61/94]
 gi|146427492|emb|CAM90215.2| DNA gyrase B subunit [Brucella sp. 4/96]
 gi|146427502|emb|CAM90206.2| DNA gyrase B subunit [Brucella sp. 55/94]
 gi|146427512|emb|CAM90197.2| DNA gyrase B subunit [Brucella sp. UK24/00 (M192)]
 gi|146427522|emb|CAM90188.2| DNA gyrase B subunit [Brucella sp. 44/94]
 gi|146427532|emb|CAM90179.2| DNA gyrase B subunit [Brucella sp. 39/94]
 gi|146427542|emb|CAM90170.2| DNA gyrase B subunit [Brucella sp. UK31/04]
 gi|146427552|emb|CAM90161.2| DNA gyrase B subunit [Brucella sp. VLA04/06]
 gi|146427562|emb|CAM90152.2| DNA gyrase B subunit [Brucella sp. VLA04/105]
 gi|146427572|emb|CAM90143.2| DNA gyrase B subunit [Brucella sp. VLA04.72]
 gi|146427582|emb|CAM90134.2| DNA gyrase B subunit [Brucella sp. VLA04.67]
 gi|146427592|emb|CAM90125.2| DNA gyrase B subunit [Brucella sp. F96/2]
 gi|146427602|emb|CAM90116.2| DNA gyrase B subunit [Brucella sp. F23/97]
 gi|146427612|emb|CAM90107.2| DNA gyrase B subunit [Brucella sp. UK15/02]
 gi|146427622|emb|CAM90098.2| DNA gyrase B subunit [Brucella sp. UK10/01]
 gi|146427632|emb|CAM90089.2| DNA gyrase B subunit [Brucella sp. UK4/01]
 gi|146427642|emb|CAM90080.2| DNA gyrase B subunit [Brucella sp. UK10/00]
 gi|146427652|emb|CAM90071.2| DNA gyrase B subunit [Brucella sp. UK5/97]
 gi|146427662|emb|CAM90062.2| DNA gyrase B subunit [Brucella sp. UK3/97]
 gi|146427672|emb|CAM90053.2| DNA gyrase B subunit [Brucella sp. UK1/97]
 gi|146427682|emb|CAM90044.2| DNA gyrase B subunit [Brucella sp. 2/96]
 gi|146427692|emb|CAM90035.2| DNA gyrase B subunit [Brucella sp. 14/95]
 gi|146427702|emb|CAM90026.2| DNA gyrase B subunit [Brucella sp. UK35/99]
 gi|146427712|emb|CAM90017.2| DNA gyrase B subunit [Brucella sp. UK15/98]
 gi|146427722|emb|CAM90008.2| DNA gyrase B subunit [Brucella sp. 52/94]
 gi|146427732|emb|CAM89999.2| DNA gyrase B subunit [Brucella sp. 36/94]
 gi|146427742|emb|CAM89990.2| DNA gyrase B subunit [Brucella neotomae]
 gi|146427752|emb|CAM89981.2| DNA gyrase B subunit [Brucella neotomae]
 gi|146427762|emb|CAM89972.2| DNA gyrase B subunit [Brucella neotomae]
 gi|146427852|emb|CAM89891.2| DNA gyrase B subunit [Brucella suis]
 gi|146427999|emb|CAM90404.2| DNA gyrase B subunit [Brucella sp. F5/02]
 gi|146428009|emb|CAM90395.2| DNA gyrase B subunit [Brucella sp. F5/99]
 gi|146428019|emb|CAM90386.2| DNA gyrase B subunit [Brucella sp. VLA05/8]
 gi|146428029|emb|CAM90377.2| DNA gyrase B subunit [Brucella sp. VLA05/4]
 gi|146428039|emb|CAM90368.2| DNA gyrase B subunit [Brucella sp. UK3/05]
 gi|146428049|emb|CAM90359.2| DNA gyrase B subunit [Brucella sp. 14/94]
 gi|146428059|emb|CAM90350.2| DNA gyrase B subunit [Brucella sp. UK2/2000]
 gi|146428069|emb|CAM90341.2| DNA gyrase B subunit [Brucella sp. UK1/2000]
 gi|146428077|emb|CAM90332.2| DNA gyrase B subunit [Brucella sp. UK43/99]
          Length = 156

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 50/132 (37%), Positives = 75/132 (56%), Gaps = 8/132 (6%)

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  L  ++G      +  + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE+ H+
Sbjct: 4   ITALGTSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHI 63

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS-QLKET 631
           ++  PPL+++T+G  S Y  +E   +  L E          ++     GEM A   L+  
Sbjct: 64  YIAQPPLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELVT-----GEMRAGPDLRSV 118

Query: 632 AMDANKRTLLRV 643
             D   RTL ++
Sbjct: 119 VED--ARTLRQL 128


>gi|315466382|emb|CBY84403.1| DNA gyrase beta subunit [Vibrio sp. PP-204]
          Length = 275

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 108/276 (39%), Positives = 158/276 (57%), Gaps = 7/276 (2%)

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           F GG++ ++     N++ I  +IF    E++     +VE A+ W +     I  + N I 
Sbjct: 2   FEGGIRAFVDHLNTNKTPIIDKIFHFDFERED--GISVEVAMQWNDGFQENIYCFTNNIP 59

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  + +      K   S   DD       ++SV + +P+F+ 
Sbjct: 60  QRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAVVSVKVPDPKFSS 119

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE+A+ +    +LV+NP EA  +   +I+ +  R   RK R    R
Sbjct: 120 QTKDKLVSSEVKSAVESAMGEKLSEFLVENPAEAKMVCSKIIDAARAREAARKAREMTRR 179

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 180 KGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 239

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRY 535
            A  +K+ ++Q++  L+ ALGC   R +Y  + LRY
Sbjct: 240 KARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRY 275


>gi|146425743|emb|CAM89126.2| DNA gyrase B subunit [Brucella abortus]
          Length = 156

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 8/132 (6%)

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  L  ++G      +  E LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE+ H+
Sbjct: 4   ITALGTSIGKDETHGFNAEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHI 63

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS-QLKET 631
           ++  PPL+++T+G  S Y  +E   +  L E          ++     GEM A   L+  
Sbjct: 64  YIAQPPLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELVT-----GEMRAGPDLRSV 118

Query: 632 AMDANKRTLLRV 643
             D   RTL ++
Sbjct: 119 VED--ARTLRQL 128


>gi|168218730|emb|CAJ29741.2| DNA gyrase subunit B [Pseudomonas kilonensis]
          Length = 287

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 81/274 (29%), Positives = 133/274 (48%), Gaps = 15/274 (5%)

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS++L +TV R   I+ Q +  G+P +P+          GT+I F+   
Sbjct: 1   LHGVGVSVVNALSEQLVLTVRRSGKIWEQTYIHGVPQAPMAIVGD-SESTGTQIHFKASS 59

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           + F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ ++
Sbjct: 60  ETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFV 111

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +    N++ ++         + G     VE A+ W +     +  + N I   +GGTH  
Sbjct: 112 EYLNTNKTPVNQVFHFNVQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLV 168

Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS 
Sbjct: 169 GFRSALTRNLNTYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSS 228

Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           + +  VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 EVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMID 262


>gi|124039605|dbj|BAF45398.1| DNA gyrase beta subunit [uncultured bacterium]
          Length = 314

 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 112/326 (34%), Positives = 170/326 (52%), Gaps = 16/326 (4%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+   V V R   I+ Q + RG P +PLE+   V    GT   F  D +IF     +
Sbjct: 1   NALSEWTTVKVRRNGKIYQQSYLRGKPSTPLEEVG-VSEGSGTTTIFMADSQIFSTT-EY 58

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L    +  AYL+  ++     +K   E+        +YF GG+  +++    NR +
Sbjct: 59  DFETLTDRLREIAYLNKGLEVYIYDEKSDQERT-------YYFEGGITGFVRHLNRNREV 111

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALTRG 341
                     +   T    +E AI + +   + T  + N + T +GGTH +G R ALTR 
Sbjct: 112 RHRHPIYITRKSDSTI---LEVAIQYNDGYSDSTPTFANCVNTIDGGTHLTGFRSALTRA 168

Query: 342 IKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
              YA  ++  +    +++ DD+    V I+SV + EP+F GQTK KL +++ +  VE+A
Sbjct: 169 FNDYAHKSKFLKDTDPNLMGDDVREGIVAIVSVKLPEPQFEGQTKGKLGNIEIKSFVESA 228

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    YL ++  +  ++LE  I  ++ R   RK R+ + RK+A+    LPGKLADCS+
Sbjct: 229 VTEQLSLYLEEHLDDTKRILEKCITAAKAREAARKARDLIIRKSALDTGTLPGKLADCSE 288

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNR 484
             A   ELF+VEGDSAGGSAKQ RNR
Sbjct: 289 RDASLCELFLVEGDSAGGSAKQGRNR 314


>gi|9632675|ref|NP_049618.1| gp60 topoisomerase II, large subunit, C-terminal region
           [Enterobacteria phage T4]
 gi|136004|sp|P23992|TOPS_BPT4 RecName: Full=DNA topoisomerase small subunit; AltName:
           Full=Protein Gp60
 gi|5354299|gb|AAD42506.1|AF158101_93 gp60 topoisomerase II, large subunit, C-terminal region
           [Enterobacteria phage T4]
 gi|215846|gb|AAA32490.1| DNA topoisomerase II, part 1 [Enterobacteria phage T4]
 gi|299780359|gb|ADJ39721.1| topoisomerase II large subunit [Enterobacteria phage T4T]
          Length = 160

 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 14/169 (8%)

Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567
            ++  +      L    R   +   + Y  V IMTDAD DG       L  F+    +L 
Sbjct: 6   IDSSSVDMKKYKLQNNVRRSIKSSSMNYANVAIMTDADHDGLGSIYPSLLGFFSNWPELF 65

Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627
           EQ  +  +  P+     G K  + +     +   +   KH      I   KGLG +  S+
Sbjct: 66  EQGRIRFVKTPVIIAQVGKKQEWFYTVAEYESAKDALPKH-----SIRYIKGLGSLEKSE 120

Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676
            +E   +          +   +   ++ ++    LMG  AD R +++ +
Sbjct: 121 YREMIQNP---------VYDVVKLPENWKELFEMLMGDNADLRKEWMSQ 160


>gi|329923235|ref|ZP_08278720.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
 gi|328941470|gb|EGG37761.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
          Length = 372

 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 61/187 (32%), Positives = 98/187 (52%), Gaps = 10/187 (5%)

Query: 63  GMYIG-GTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENH 121
           GMY G       +H L   V++N++ E  +GY + I + L  +G +TV DNGRGIPV+  
Sbjct: 191 GMYFGPSHGFD-IHQLLWAVVENSILEHTSGYGDQIGIFLHEDGSVTVTDNGRGIPVQAL 249

Query: 122 PKFPNKSTLEIILTTLHAGGKFDNST-YEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
           P   +   ++ ILT +H   +F+NS  + + G   G+ I+VVNALS +L V + R   I+
Sbjct: 250 P-NSDVPVVQSILTDVH---RFNNSAHFLVPGAEKGISIAVVNALSKQLSVEIRRDGNIY 305

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
            Q++  GIP + L      +   GT +TF+P+P++F     F   R+L+   + A     
Sbjct: 306 RQEYRHGIPQTGLLTVGLTQE-TGTSVTFKPEPELFSSAFEF--DRILERKDAIAADYPA 362

Query: 241 VKTCWSC 247
           +      
Sbjct: 363 LALTLRN 369


>gi|302122559|gb|ADK92947.1| topoisomerase IV subunit B [Geobacillus gargensis]
          Length = 269

 Score =  131 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 79/281 (28%), Positives = 133/281 (47%), Gaps = 17/281 (6%)

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+ L VT+ R   I+ Q+F  G       +K    NK GT I F+PDP IF     
Sbjct: 1   VNALSEWLGVTIHRDGFIYRQRFEHGGKPVTTLEKIGTTNKTGTIIQFKPDPTIFTTTV- 59

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L +  +  A+L   +K     ++           + F++  G++ ++    E + 
Sbjct: 60  FDYETLSERLRESAFLLKGLKIELVDER-------TGMHDVFHYENGIEAFVAYLNEEKD 112

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340
           ++         E+ G     VE+A  + +   E   S+ N + T +GGTHE+G + A+TR
Sbjct: 113 VLHPV-VYFSGEQHGI---EVEFAFQFHDGYSENVLSFVNNVRTKDGGTHEAGAKTAMTR 168

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396
              +YA       ++  ++   D+      ++SV I E   +F GQTK KL + +A+  V
Sbjct: 169 VFNEYARRVGLLKEKDKNLEGSDIREGLSAVVSVRIPEHLLQFEGQTKGKLGTSEARSAV 228

Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437
           +  + +   ++L +NP  +T L++  I   + R   RK RE
Sbjct: 229 DAVVSEQLTYFLQENPDVSTMLIKKAIRAYQAREAARKARE 269


>gi|331029391|gb|AEC49845.1| DNA gyrase beta subunit [Bradyrhizobium sp. SEMIA 6028]
          Length = 227

 Score =  131 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 74/236 (31%), Positives = 120/236 (50%), Gaps = 10/236 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS +L + + R +     +F+ G  ++PL+       KRGT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHGDAVAPLKVVGDAPGKRGTE 60

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           +TF    + F +   +D A L    +  A+L+  V    S  +   EK      EE ++ 
Sbjct: 61  VTFLASTETFKN-VEYDFATLEHRLRELAFLNSGVHIVLSDMRHAVEKR-----EEMHYS 114

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTD 325
           GG++ +++    N++ I       ++E  G     VE A+ W +   E    + N I   
Sbjct: 115 GGVEEFVKYLDRNKTAIVPAPIMVRSEANGI---GVEAALWWNDSYHENVLCFTNNIPQR 171

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
           +GGTH +G R ALTR +  YA+    K  I++  DD       +LSV + +P+F+ 
Sbjct: 172 DGGTHLAGFRGALTRQVNGYADANAKKEKIALTGDDCREGLTAVLSVKVPDPKFSS 227


>gi|83646507|ref|YP_434942.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV)
           subunit B [Hahella chejuensis KCTC 2396]
 gi|83634550|gb|ABC30517.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Hahella chejuensis KCTC 2396]
          Length = 325

 Score =  131 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 123/290 (42%), Gaps = 19/290 (6%)

Query: 52  LEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVD 111
           L   + VR RPGMY G  D  A++H+  E++ N +D  +AG A  ++V +     + V+D
Sbjct: 2   LSFKDAVRKRPGMYFGDIDHNAVNHVIYELVANVVDLFLAGRATTLKVDV-SECEIIVID 60

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171
           +G G P        N   +E  LT  H     D+    I     G+G++ VNA+S++L +
Sbjct: 61  DGPGFPFPVEDSAHNL--VERYLTHHHDKPTADDHAPHIHVLGGGLGLAAVNAVSEKLTI 118

Query: 172 TVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMT 231
             +     + Q F +G  L+PLE         G+ I F  DP +F ++      +L K  
Sbjct: 119 ESSNGAWRWRQVFGKGDVLAPLESFRY-DGPSGSSIKFTLDPSVFHNRLPDFF-QLRKAM 176

Query: 232 QSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGK 291
              A+L   +   +  ++ +++             G ++         +   + ++F  K
Sbjct: 177 FELAHLYSGLIVEFDGERYVSK------------QGLMELAYLMWSGPKWAFNPKMFRFK 224

Query: 292 TEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341
            + +         AI      P   S+ N   T+E G H +GLR AL   
Sbjct: 225 GQTEDVGFEVA--AIGDGGSPPCYKSWVNGCETEEHGAHVNGLRQALNYA 272


>gi|219963032|gb|ACL68104.1| DNA gyrase subunit B [Xenorhabdus romanii]
          Length = 287

 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 85/298 (28%), Positives = 140/298 (46%), Gaps = 15/298 (5%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            +  Q +  G+P SPL+         GT + F P    F     F+   L K  +  ++L
Sbjct: 1   KVHEQTYRHGVPQSPLKVVGDT-EHTGTTVRFWPSMDTFKINTEFEYDILAKRLRELSFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V       +  AE       E F++ GG+K +++    N++ I   +F   TEK G 
Sbjct: 60  NSGVSIRLVDKRTNAE-------EHFHYEGGIKAFVEFLSRNKNPIHPNVFYFSTEKDGI 112

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRA 354
               VE ++ W +     I  + N I   +GGTH  G R A+TR +  Y +      K  
Sbjct: 113 ---GVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSK 169

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL+++P +
Sbjct: 170 VSATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLEHPND 229

Query: 415 ATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           A  ++  +I+        R+ +    RK A+    LPGKLADC +     +EL++VEG
Sbjct: 230 AKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|224496226|gb|ACN52494.1| gyrB [Enterobacter sp. ATCC 29918]
          Length = 246

 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 70/257 (27%), Positives = 125/257 (48%), Gaps = 14/257 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
            N +  Q ++ G+P +PLE   +     GT + F P  + F +   F+   L K  +  +
Sbjct: 1   DNKVHRQIYTHGVPQAPLEVTGETEK-TGTMVRFWPSYETFTNVIEFEYEILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++  E       + F++ GG++ +++   +N++ I   IF   TEK 
Sbjct: 60  FLNSGVSIRLRDKRDGKE-------DHFHYEGGIRAFVEYLNKNKTPIHPNIFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEER 429
            +A  ++  +I+ +  R
Sbjct: 230 ADAKIVVGKIIDAARAR 246


>gi|84180490|gb|ABC54691.1| gyrase B [Pseudomonas sp. JF-10]
          Length = 192

 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 63/203 (31%), Positives = 102/203 (50%), Gaps = 12/203 (5%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G+P +PL    +     GT + 
Sbjct: 1   KVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVR 59

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ GG
Sbjct: 60  FWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGG 112

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           +K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   +G
Sbjct: 113 IKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDG 169

Query: 328 GTHESGLRVALTRGIKKYAELTQ 350
           GTH +G R A+TR +  Y +   
Sbjct: 170 GTHLAGFRAAMTRTLNAYMDKEG 192


>gi|145480575|ref|XP_001426310.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124393384|emb|CAK58912.1| unnamed protein product [Paramecium tetraurelia]
          Length = 221

 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 68/162 (41%), Gaps = 33/162 (20%)

Query: 37  NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE------------------------K 72
           +++  D Y     +++  +E + +RP  YIG  +                         +
Sbjct: 2   SKNVEDVY-----KMVSQVEHILLRPDTYIGSVEISDQELWICEDSDQISFKFEEFSYCQ 56

Query: 73  ALHHLFSEVIDNAMDEVIAGYA-NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLE 131
            L+ +F E++ NA D      + + I VS+D +  + V + G GIP++ H ++ N    E
Sbjct: 57  GLYKIFDEILVNAADNYQRDKSTDRISVSIDND-SIMVENTGAGIPIQIHKQY-NIYVPE 114

Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVN-ALSDELHVT 172
           +I   L     +D+S  +++GG +G G  V     S      
Sbjct: 115 MIFGRLLTSSNYDDSEQKVTGGRNGFGDKVSQTCFSSIFQGW 156


>gi|224496212|gb|ACN52487.1| gyrB [Enterobacter sp. ATCC 27981]
 gi|224496214|gb|ACN52488.1| gyrB [Enterobacter sp. ATCC 27990]
          Length = 246

 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 69/257 (26%), Positives = 122/257 (47%), Gaps = 14/257 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
            N +  Q +  G+P +PL          GT + F P  + F +   F+   L K  +  +
Sbjct: 1   DNKVHRQIYEHGVPQAPLAVTGDTEK-TGTMVRFWPSYETFTNVTEFEYEILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++  E       + F++ GG+K +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLKDKRDGKE-------DHFHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEER 429
            +A  ++  +I+ +  R
Sbjct: 230 SDAKIVVGKIIDAARAR 246


>gi|224496224|gb|ACN52493.1| gyrB [Enterobacter sp. ATCC 27988]
          Length = 246

 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 70/257 (27%), Positives = 123/257 (47%), Gaps = 14/257 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
            N +  Q +  G+P +PL    +     GT + F P  + F +   F+   L K  +  +
Sbjct: 1   DNKVHRQIYEHGVPQAPLAVTGET-ESTGTMVRFWPSYETFTNVTEFEYEILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++  E       + F++ GG+K +++   +N++ I   IF   TEK 
Sbjct: 60  FLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEER 429
            +A  ++  +I+ +  R
Sbjct: 230 SDAKIVVGKIIDAARAR 246


>gi|281332046|emb|CAZ39997.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 242

 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 76/251 (30%), Positives = 129/251 (51%), Gaps = 13/251 (5%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS +L V V +    + Q+FS G  ++ L K E     RGT + 
Sbjct: 2   QVSGGLHGVGVSVVNALSQKLLVDVFQNGFHYQQEFSNGAAVTALAKLETTTK-RGTTVR 60

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F P    F D   F    L +  +  ++L+  VK   + ++          +++F++ GG
Sbjct: 61  FWPSTVAFHDNVEFHYDILARRLRELSFLNSGVKIVLADERGD------GRRDDFHYEGG 114

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327
           ++++++   + ++ +   + +   E  G     V+ A+ W +     +  + N I   +G
Sbjct: 115 IRSFVEHLAQLKTPLHPNVISVTGEHNGI---VVDVALQWTDSYQETMYCFTNNIPQKDG 171

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           GTH +G R ALTR +  Y E     +   I++  DD+    + +LSV + +P F+ QTK 
Sbjct: 172 GTHLAGFRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKE 231

Query: 386 KLVSLDAQRTV 396
           KLVS D +  V
Sbjct: 232 KLVSSDVRPAV 242


>gi|57903692|gb|AAW58146.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 312

 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 103/318 (32%), Positives = 163/318 (51%), Gaps = 13/318 (4%)

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L    +  ++L+  +K     ++          +++F++ GG++++++   +
Sbjct: 2   MWSFITKILQSALRELSFLNSGLKVSLIDERG------EGRRDDFHYEGGIRSFVEHLAQ 55

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
            ++ +   + +   E  G     V+ A+ W +     +  + N I   +GGTH +G R A
Sbjct: 56  LKTPLHPNVISVTGEHNGI---VVDAALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRAA 112

Query: 338 LTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E     R   I    DD+    + +LSV + EP F+ QTK KLVS D +  
Sbjct: 113 LTRTLGNYIEQNGVARQAKITFSGDDMREGMIAVLSVKVPEPSFSSQTKEKLVSSDVKPA 172

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLA 454
           VE       + +L +NP EA  +   +++ +  R   RK R++ R+   +    LPGKLA
Sbjct: 173 VEATFGLRLEEFLQENPNEARAIAGKIVDAARAREAARKARDLTRRKGVLDIAGLPGKLA 232

Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514
           DC +     +ELFIVEGDSAGGSAKQ RNR NQAVLPLRGKILNV  A  +++ ++ ++ 
Sbjct: 233 DCQEKDPAMSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLSSAEVG 292

Query: 515 DLVQALGCRTRSQYREED 532
            L+ ALG          D
Sbjct: 293 TLITALGTGIGKDEYNPD 310


>gi|145640541|ref|ZP_01796125.1| DNA gyrase subunit B [Haemophilus influenzae R3021]
 gi|145275127|gb|EDK14989.1| DNA gyrase subunit B [Haemophilus influenzae 22.4-21]
          Length = 141

 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 8/104 (7%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           + +G K          ++ +E   K  +  +E+ R+KGLGEM A QL ET MD N R +L
Sbjct: 45  VIRGEKVQPVRS---FEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRML 101

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R +FI+  A    ++ 
Sbjct: 102 KVSIKDAV----AADQLFTTLMGDEVEPRREFIELNALRA-NLD 140


>gi|281332052|emb|CAZ40000.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 247

 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 78/251 (31%), Positives = 129/251 (51%), Gaps = 13/251 (5%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS +L V V +    + Q+FS G  ++ L K E     RGT + F 
Sbjct: 1   SGGLHGVGVSVVNALSQKLLVDVFQNGFHYQQEFSNGAAVTALAKLETTTK-RGTTVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P    F D   F    L +  +  ++L+  VK   + ++          +++F++ GG++
Sbjct: 60  PSTVAFHDNVEFHYDILARRLRELSFLNSGVKIVLADERGD------GRRDDFHYEGGIR 113

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
           ++++   + ++ +   + +   E  G     V+ A+ W +     +  + N I   +GGT
Sbjct: 114 SFVEHLAQLKTPLHPNVISVTGEHNGI---VVDVALQWTDSYQETMYCFTNNIPQKDGGT 170

Query: 330 HESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R ALTR +  Y E     +   I++  DD+    + +LSV + +P F+ QTK KL
Sbjct: 171 HLAGFRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKL 230

Query: 388 VSLDAQRTVEN 398
           VS D +  VEN
Sbjct: 231 VSSDVRPAVEN 241


>gi|195934658|gb|ACG58688.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. kayaii]
          Length = 287

 Score =  130 bits (326), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 86/298 (28%), Positives = 143/298 (47%), Gaps = 15/298 (5%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            +  Q +  G+P SPL+   +   + GTR+ F P    F +   F    L K  +  ++L
Sbjct: 1   KVHEQTYHLGVPQSPLKVVGET-EQTGTRVRFWPSMDTFRNNTEFQHDILAKRLRELSFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V       +   E       + F++ GG+K +++   +N++ I   +F   TEK G 
Sbjct: 60  NSGVSIRLIDKRTNIE-------DHFHYEGGIKAFVEFLNKNKTPIHPNVFYFSTEKDGI 112

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRA 354
               VE ++ W +     I  + N I   +GGTH  G R A+TR +  Y +      K  
Sbjct: 113 ---GVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSK 169

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +S   DD     V ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +
Sbjct: 170 VSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPND 229

Query: 415 ATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           A  ++  +I+        R+ +    RK A+    LPGKLADC +     +EL++VEG
Sbjct: 230 AKTVVSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|10121859|gb|AAG13402.1|AF285156_1 topoisomerase II beta-2 [Gallus gallus]
          Length = 264

 Score =  130 bits (326), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 93/254 (36%), Gaps = 24/254 (9%)

Query: 81  VIDNAMDEVIAG-YANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLH 138
           ++ NA D          I++S+D     +++ +NG+GIPV  H K        +I   L 
Sbjct: 28  ILVNAADNKQRDKNMTCIKISIDPESNIISIWNNGKGIPVVEH-KVEKVYVPALIFGQLL 86

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK--FSRGIPLSPLEKK 196
               +D+   +++GG +G G  + N  S +  V  A +    S K  +   +  +   K 
Sbjct: 87  TSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEPKI 146

Query: 197 EKVRNKRGTRITFRPD--PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254
           +       T ITF+PD       +      + + +     A     VK   +  K     
Sbjct: 147 KHFEGDDYTCITFQPDLSKFKMENLDKDIVSLMTRRAYDLAGSCKGVKVMLNGKKLPV-- 204

Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE 314
                        G ++Y+   ++++   +        E         +  +   E+  +
Sbjct: 205 ------------NGFRSYVDLYVKDKLDETGVALKVIHE---VVNERWDVCLTLSEKGFQ 249

Query: 315 ITSYCNTILTDEGG 328
             S+ N+I T +GG
Sbjct: 250 QISFVNSIATTKGG 263


>gi|219963072|gb|ACL68124.1| DNA gyrase subunit B [Xenorhabdus budapestensis]
 gi|219963074|gb|ACL68125.1| DNA gyrase subunit B [Xenorhabdus budapestensis]
          Length = 287

 Score =  130 bits (326), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 83/298 (27%), Positives = 140/298 (46%), Gaps = 15/298 (5%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            +  Q +  G+P +PL+       + GT + F P    F     F+   L K  +  ++L
Sbjct: 1   KVHEQTYHHGVPQAPLKVVGDT-EQTGTTVRFWPSMDTFKINTDFEFDILAKRLRELSFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V       +   E       + F++ GG+K +++    N++ I   +F   TEK G 
Sbjct: 60  NSGVSIRLVDKRTNTE-------DFFHYEGGIKAFVEFLSRNKNPIHPNVFYFSTEKDGI 112

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRA 354
               VE ++ W +     I  + N I   +GGTH  G R A+TR +  Y +      K  
Sbjct: 113 ---GVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSK 169

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +
Sbjct: 170 VSATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETMMNEKLVEYLLENPND 229

Query: 415 ATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           A  ++  +I+        R+ +    RK A+    LPGKLADC +     +EL++VEG
Sbjct: 230 AKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPARSELYLVEG 287


>gi|224496218|gb|ACN52490.1| gyrB [Enterobacter sp. ATCC 27982]
 gi|224496220|gb|ACN52491.1| gyrB [Enterobacter sp. ATCC 27989]
          Length = 246

 Score =  130 bits (326), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 70/257 (27%), Positives = 122/257 (47%), Gaps = 14/257 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
            N +  Q +  G+P +PL          GT + F P  + F +   F+   L K  +  +
Sbjct: 1   DNKVHRQIYEHGVPQAPLAVTGDTEK-TGTMVRFWPSYETFTNVTEFEYEILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++  E       + F++ GG+K +++   +N++ I   IF   TEK 
Sbjct: 60  FLNSGVSIRLKDKRDGKE-------DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLGEYLLENP 229

Query: 413 IEATKLLEWVIERSEER 429
            +A  ++  +I+ +  R
Sbjct: 230 SDAKIVVGKIIDAARAR 246


>gi|146426366|emb|CAM89828.2| DNA gyrase B subunit [Brucella suis]
 gi|146426376|emb|CAM89819.2| DNA gyrase B subunit [Brucella suis]
 gi|146426386|emb|CAM89810.2| DNA gyrase B subunit [Brucella suis]
 gi|146426396|emb|CAM89801.2| DNA gyrase B subunit [Brucella suis]
 gi|146426406|emb|CAM89792.2| DNA gyrase B subunit [Brucella suis]
 gi|146426416|emb|CAM89783.2| DNA gyrase B subunit [Brucella suis]
 gi|146426426|emb|CAM89774.2| DNA gyrase B subunit [Brucella suis]
 gi|146426436|emb|CAM89765.2| DNA gyrase B subunit [Brucella suis]
 gi|146426446|emb|CAM89756.2| DNA gyrase B subunit [Brucella suis]
 gi|146426456|emb|CAM89747.2| DNA gyrase B subunit [Brucella suis]
 gi|146426466|emb|CAM89738.2| DNA gyrase B subunit [Brucella suis]
 gi|146426476|emb|CAM89729.2| DNA gyrase B subunit [Brucella suis]
 gi|146426486|emb|CAM89720.2| DNA gyrase B subunit [Brucella suis]
 gi|146426496|emb|CAM89711.2| DNA gyrase B subunit [Brucella suis]
 gi|146426506|emb|CAM89702.2| DNA gyrase B subunit [Brucella suis]
 gi|146426516|emb|CAM89693.2| DNA gyrase B subunit [Brucella suis]
 gi|146426526|emb|CAM89684.2| DNA gyrase B subunit [Brucella suis]
 gi|146426536|emb|CAM89675.2| DNA gyrase B subunit [Brucella suis]
 gi|146426546|emb|CAM89666.2| DNA gyrase B subunit [Brucella suis]
 gi|146426556|emb|CAM89657.2| DNA gyrase B subunit [Brucella suis]
 gi|146426566|emb|CAM89648.2| DNA gyrase B subunit [Brucella suis]
 gi|146426576|emb|CAM89639.2| DNA gyrase B subunit [Brucella suis]
 gi|146426586|emb|CAM89630.2| DNA gyrase B subunit [Brucella suis]
 gi|146426596|emb|CAM89621.2| DNA gyrase B subunit [Brucella suis]
 gi|146426606|emb|CAM89612.2| DNA gyrase B subunit [Brucella suis]
 gi|146426616|emb|CAM89603.2| DNA gyrase B subunit [Brucella suis]
 gi|146426626|emb|CAM89594.2| DNA gyrase B subunit [Brucella suis]
 gi|146426636|emb|CAM89585.2| DNA gyrase B subunit [Brucella suis]
 gi|146426646|emb|CAM89576.2| DNA gyrase B subunit [Brucella suis]
 gi|146426656|emb|CAM89567.2| DNA gyrase B subunit [Brucella suis]
 gi|146426666|emb|CAM89558.2| DNA gyrase B subunit [Brucella suis]
 gi|146426676|emb|CAM89549.2| DNA gyrase B subunit [Brucella suis ATCC 23445]
 gi|146426686|emb|CAM89540.2| DNA gyrase B subunit [Brucella suis]
 gi|146426696|emb|CAM89531.2| DNA gyrase B subunit [Brucella suis]
 gi|146426706|emb|CAM89522.2| DNA gyrase B subunit [Brucella suis]
 gi|146426716|emb|CAM89513.2| DNA gyrase B subunit [Brucella suis]
 gi|146426726|emb|CAM89504.2| DNA gyrase B subunit [Brucella suis]
 gi|146426736|emb|CAM89495.2| DNA gyrase B subunit [Brucella suis]
 gi|146426746|emb|CAM89486.2| DNA gyrase B subunit [Brucella suis]
 gi|146426756|emb|CAM89477.2| DNA gyrase B subunit [Brucella suis]
 gi|146426766|emb|CAM89468.2| DNA gyrase B subunit [Brucella suis]
 gi|146426776|emb|CAM89459.2| DNA gyrase B subunit [Brucella suis]
 gi|146426786|emb|CAM89450.2| DNA gyrase B subunit [Brucella suis 1330]
 gi|146427772|emb|CAM89963.2| DNA gyrase B subunit [Brucella canis]
 gi|146427782|emb|CAM89954.2| DNA gyrase B subunit [Brucella canis]
 gi|146427792|emb|CAM89945.2| DNA gyrase B subunit [Brucella canis]
 gi|146427802|emb|CAM89936.2| DNA gyrase B subunit [Brucella canis]
 gi|146427812|emb|CAM89927.2| DNA gyrase B subunit [Brucella canis]
 gi|146427822|emb|CAM89918.2| DNA gyrase B subunit [Brucella canis]
 gi|146427832|emb|CAM89909.2| DNA gyrase B subunit [Brucella canis]
 gi|146427842|emb|CAM89900.2| DNA gyrase B subunit [Brucella canis]
 gi|146427862|emb|CAM89882.2| DNA gyrase B subunit [Brucella suis]
 gi|146427872|emb|CAM89873.2| DNA gyrase B subunit [Brucella suis]
 gi|146427882|emb|CAM89864.2| DNA gyrase B subunit [Brucella suis]
 gi|146427892|emb|CAM89855.2| DNA gyrase B subunit [Brucella suis]
 gi|146427902|emb|CAM89846.2| DNA gyrase B subunit [Brucella suis]
 gi|146427912|emb|CAM89837.2| DNA gyrase B subunit [Brucella suis]
          Length = 156

 Score =  130 bits (326), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 45/113 (39%), Positives = 67/113 (59%), Gaps = 5/113 (4%)

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  L  ++G      +  + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE+ H+
Sbjct: 4   ITALGTSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHI 63

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625
           ++  PPL+++T+G  S Y  +E   +  L E          ++     GEM A
Sbjct: 64  YIAQPPLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELVT-----GEMRA 111


>gi|195934646|gb|ACG58682.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. akhurstii]
 gi|195934670|gb|ACG58694.1| DNA gyrase subunit B [Photorhabdus luminescens subsp.
           caribbeanensis]
 gi|195934672|gb|ACG58695.1| DNA gyrase subunit B [Photorhabdus luminescens subsp.
           caribbeanensis]
          Length = 287

 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 86/298 (28%), Positives = 143/298 (47%), Gaps = 15/298 (5%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            +  Q +  G+P SPL+   +   + GTR+ F P    F +   F    L K  +  ++L
Sbjct: 1   KVHEQTYHLGVPQSPLKVVGET-EQTGTRVRFWPSMDTFRNNTEFQHDILAKRLRELSFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V       +   E       + F++ GG+K +++   +N++ I   +F   TEK G 
Sbjct: 60  NSGVSIRLIDKRTNTE-------DHFHYEGGIKAFVEFLNKNKTPIHPNVFYFSTEKDGI 112

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRA 354
               VE ++ W +     I  + N I   +GGTH  G R A+TR +  Y +      K  
Sbjct: 113 ---GVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSK 169

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +S   DD     V ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +
Sbjct: 170 VSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPND 229

Query: 415 ATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           A  ++  +I+        R+ +    RK A+    LPGKLADC +     +EL++VEG
Sbjct: 230 AKTVVSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|209408284|emb|CAP19827.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 288

 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 83/273 (30%), Positives = 134/273 (49%), Gaps = 15/273 (5%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS+EL +T+ R+  ++ Q +  G+P +PL    +  +  GT+I F+P  +
Sbjct: 1   HGVGVSVVNALSEELMLTIRREGKVWEQLYRHGVPQAPLAPVGET-DTSGTQIHFKPSAE 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
            F +   F    L K  +  ++L+  V      ++   E       E F + GGL  ++ 
Sbjct: 60  TFQNIH-FSWDILAKRLRELSFLNSGVGIFLRDERTAKE-------ELFKYEGGLSAFVA 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
               N++ ++           G     VE A+ W +     I  + N I   +GGTH +G
Sbjct: 112 YLNTNKTAVNQVFHFNIQRDDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGTHLAG 168

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y E      K  IS   DD       I+SV + +P+F+ QTK KLVS +
Sbjct: 169 FRSALTRNLNNYIEQEGLAKKHKISTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSE 228

Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            +  VE  +   F  +L+++P EA  ++  +I+
Sbjct: 229 VKTAVEQEMGKYFADFLLEHPNEAKAVVGKMID 261


>gi|170015635|emb|CAP05255.1| DNA gyrase B subunit [Brucella sp. BO1]
          Length = 156

 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 41/93 (44%), Positives = 61/93 (65%)

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  L  ++G      +  + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE+ H+
Sbjct: 4   ITALGTSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHI 63

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605
           ++  PPL+++T+G  S Y  +E   +  L E  
Sbjct: 64  YIAQPPLYKVTRGKSSQYIKNEAAFEDFLIETG 96


>gi|164456667|dbj|BAF97826.1| gyrase B subunit [Vibrio fortis]
          Length = 261

 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 77/271 (28%), Positives = 131/271 (48%), Gaps = 13/271 (4%)

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS ++ +T+ R   I +Q +  G P +PL    +  +K GT I F P  + F +   
Sbjct: 1   VNALSKQVTLTIHRGGQIHTQTYHHGEPQAPLAVIGET-DKTGTEIRFWPSEETFSN-TE 58

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F    L K  +  ++L+  V      ++E        + + F F GG++ +++    N++
Sbjct: 59  FHYDILAKRLRELSFLNSGVSIKLRDERE------EDKGDHFMFEGGIQAFVEHLNTNKT 112

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I  +IF    E+      TVE A+ W +     I  + N I   +GGTH +G R ALTR
Sbjct: 113 PIIQKIFHFDNERDD--GITVEVAMQWNDGYQENIYCFTNNIPQRDGGTHLAGFRAALTR 170

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE 
Sbjct: 171 TLNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQ 230

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           A+ +    +L++NP EA  +   +I+ +  R
Sbjct: 231 AMGEKLSEFLIENPAEAKTVCTKIIDAARAR 261


>gi|195934668|gb|ACG58693.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. laumondii]
          Length = 287

 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 87/298 (29%), Positives = 143/298 (47%), Gaps = 15/298 (5%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            +  Q +  G+P SPL+   +   + GTR+ F P    F D   F    L K  +  ++L
Sbjct: 1   KVHEQTYHLGVPQSPLKVVGET-EQTGTRVRFWPSMDTFRDNTEFQHDILAKRLRELSFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V       +   E       + F++ GG+K +++   +N++ I   +F   TEK G 
Sbjct: 60  NSGVSIRLIDKRTNIE-------DHFHYEGGIKAFVEFLNKNKTPIHPNVFYFSTEKDGI 112

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRA 354
               VE ++ W +     I  + N I   +GGTH  G R A+TR +  Y +      K  
Sbjct: 113 ---GVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSK 169

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +S   DD     V ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +
Sbjct: 170 VSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPND 229

Query: 415 ATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           A  ++  +I+        R+ +    RK A+    LPGKLADC +     +EL++VEG
Sbjct: 230 AKTVVSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|219963092|gb|ACL68134.1| DNA gyrase subunit B [Xenorhabdus poinarii]
          Length = 287

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 84/298 (28%), Positives = 141/298 (47%), Gaps = 15/298 (5%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            +  Q +  GIP SPL+       + GT + F P  + F     F+   L K  +  ++L
Sbjct: 1   KVHEQTYHLGIPQSPLKVVGDT-EQTGTTVRFWPSMETFKVNTAFEYDILAKRLRELSFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V       +   E       + F++ GG+K +++    N++ I   +F   TEK G 
Sbjct: 60  NSGVSIRLVDKRTNTE-------DHFHYEGGIKAFVEFLSRNKNPIHPNVFYFSTEKDGI 112

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRA 354
               VE ++ W +     +  + N I   +GGTH  G R A+TR +  Y +      K  
Sbjct: 113 ---GVEISMQWNDGFQENVYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSK 169

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +
Sbjct: 170 VSATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETQMNEKLVEYLLENPND 229

Query: 415 ATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           A  ++  +I+        R+ +    RK A+    LPGKLADC +     +EL++VEG
Sbjct: 230 AKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPARSELYLVEG 287


>gi|219963042|gb|ACL68109.1| DNA gyrase subunit B [Xenorhabdus miraniensis]
          Length = 287

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 84/298 (28%), Positives = 140/298 (46%), Gaps = 15/298 (5%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            +  Q +  G+P +PL        + GT + F P  + F     F+   L K  +  ++L
Sbjct: 1   KVHEQTYHMGVPQAPLRVVGDT-EQTGTTVRFWPSMETFKVNTEFEYDILAKRLRELSFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V       +  AE         F++ GG+K +++    N++ I   +F   TEK G 
Sbjct: 60  NSGVSIRLVDKRTNAEDL-------FHYEGGIKAFVEFLSRNKNPIHPNVFYFSTEKDGI 112

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRA 354
               VE ++ W +     I  + N I   +GGTH  G R A+TR +  Y +      K  
Sbjct: 113 ---GVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSK 169

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +
Sbjct: 170 VSATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPND 229

Query: 415 ATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           A  ++  +I+        R+ +    RK A+    LPGKLADC +     +EL++VEG
Sbjct: 230 AKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|223674652|gb|ACN13022.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
          Length = 222

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 111/231 (48%), Gaps = 15/231 (6%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+++Y++SGGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P  P++   + 
Sbjct: 2   GGKFDDNSYKVSGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE- 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            +  GT+I F+P    F +   F    L K  +  ++L+  V      ++   E      
Sbjct: 61  SDTTGTQIHFKPSADTFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE------ 113

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
            E F + GGL+ +++    N++ ++           G     VE A+ W +     +  +
Sbjct: 114 -ELFKYEGGLRAFVEYLNTNKTPVNQVFHFNIQRDDGI---GVEIALQWNDSFNENLLCF 169

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
            N I   +GGTH  G R ALTR +  Y E      K  ++   DD      
Sbjct: 170 TNNIPQRDGGTHLVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLT 220


>gi|190148828|gb|ACE63389.1| DNA gyrase B subunit [Pseudonocardia alni]
          Length = 353

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 106/357 (29%), Positives = 169/357 (47%), Gaps = 42/357 (11%)

Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243
           +   +P   +E     ++  GT IT+  DPKIF     +    + +  Q + +L+  +  
Sbjct: 1   YEYAVPGELVEAGTTKKSDTGTTITYWADPKIFETT-SYTLETIRRRLQEQTFLNKGLTM 59

Query: 244 CWSCDKEIAE----------------------------------KYGIPEKEEFYFPGGL 269
               ++   +                                      P++  F++P GL
Sbjct: 60  VLRDERRPEKPAGVPSSDAVDSDGNPIEAPVPEIDADAEPDAEGYVAKPKEYVFHYPNGL 119

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328
           + ++    +++  I  +I +   E  G     VE A+ W       + ++ NTI T EGG
Sbjct: 120 EDFVAHLNKSKDPIHRKIVSYTGEGPGHQ---VEVAMQWNSGYSESVYTFANTINTHEGG 176

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           THE G R ALT  + KYA   +   ++  ++  DD+      I+SV + EP+F GQTKTK
Sbjct: 177 THEEGFRHALTATVNKYARDKKLIKEKDPALSGDDIREGLAAIVSVKVSEPQFEGQTKTK 236

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445
           L + + +  V+    +    +  +NP EA  ++   +  ++ RL  R+ RE V RK+A  
Sbjct: 237 LGNTEVKSFVQRVSNEWLADWFERNPTEAKTIVTKAVSSAQARLAARRARELVRRKSAGD 296

Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502
              LPGKL+DC        EL+IVEGDSAGGSAK  R+  +QA+LP+RGKI+NV  A
Sbjct: 297 IGGLPGKLSDCRSRDPESCELYIVEGDSAGGSAKAGRDSMHQAILPIRGKIINVEKA 353


>gi|223674626|gb|ACN13009.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674658|gb|ACN13025.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674660|gb|ACN13026.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674662|gb|ACN13027.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674664|gb|ACN13028.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674670|gb|ACN13031.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674672|gb|ACN13032.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674676|gb|ACN13034.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674678|gb|ACN13035.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674680|gb|ACN13036.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674682|gb|ACN13037.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
          Length = 221

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 71/233 (30%), Positives = 112/233 (48%), Gaps = 15/233 (6%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+++Y++SGGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P  P++   + 
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE- 59

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            +  GT+I F+P    F +   F    L K  +  ++L+  V      ++   E      
Sbjct: 60  SDTTGTQIHFKPSADTFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE------ 112

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
            E F + GGL+ +++    N++ ++           G     VE A+ W +     +  +
Sbjct: 113 -ELFKYEGGLRAFVEYLNTNKTPVNQVFHFNIQRDDGI---GVEIALQWNDSFNENLLCF 168

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369
            N I   +GGTH  G R ALTR +  Y E      K  ++   DD       I
Sbjct: 169 TNNIPQRDGGTHLVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTXI 221


>gi|195934644|gb|ACG58681.1| DNA gyrase subunit B [Photorhabdus asymbiotica subsp. asymbiotica]
          Length = 287

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 86/298 (28%), Positives = 143/298 (47%), Gaps = 15/298 (5%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            +  Q +  G+P SPL+   +   + GTR+ F P    F +   F    L K  +  ++L
Sbjct: 1   KVHEQTYHLGVPQSPLKIVGET-EQTGTRVRFWPSMDTFRNNTEFQHDILAKRLRELSFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V       +   E       + F++ GG+K +++   +N++ I   +F   TEK G 
Sbjct: 60  NSGVSIRLIDKRTNTE-------DHFHYEGGIKAFVEFLNKNKTPIHPNVFYFSTEKDGI 112

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRA 354
               VE ++ W +     I  + N I   +GGTH  G R A+TR +  Y +      K  
Sbjct: 113 ---GVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSK 169

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +S   DD     V ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +
Sbjct: 170 VSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPND 229

Query: 415 ATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           A  ++  +I+        R+ +    RK A+    LPGKLADC +     +EL++VEG
Sbjct: 230 AKTVVSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|219963078|gb|ACL68127.1| DNA gyrase subunit B [Xenorhabdus indica]
 gi|219963080|gb|ACL68128.1| DNA gyrase subunit B [Xenorhabdus indica]
          Length = 287

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 83/298 (27%), Positives = 139/298 (46%), Gaps = 15/298 (5%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            +  Q +  G+P +PL+       + GT + F P    F     F+   L K  +  ++L
Sbjct: 1   KVHEQTYHHGVPQAPLKVVGDT-EQTGTTVRFWPSMDTFKINTDFEFDILAKRLRELSFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V       +   E         F++ GG+K +++    N++ I   +F   TEK G 
Sbjct: 60  NSGVSIRLVDKRTNTEDL-------FHYEGGIKAFVEFLSRNKNPIHPNVFYFSTEKDGI 112

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRA 354
               VE ++ W +     I  + N I   +GGTH  G R A+TR +  Y +      K  
Sbjct: 113 ---GVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSK 169

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +
Sbjct: 170 VSATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETMMNEKLVEYLLENPND 229

Query: 415 ATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           A  ++  +I+        R+ +    RK A+    LPGKLADC +     +EL++VEG
Sbjct: 230 AKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|223674620|gb|ACN13006.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674624|gb|ACN13008.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674628|gb|ACN13010.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674630|gb|ACN13011.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674632|gb|ACN13012.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674634|gb|ACN13013.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674638|gb|ACN13015.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674640|gb|ACN13016.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674644|gb|ACN13018.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674690|gb|ACN13041.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
          Length = 219

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 111/231 (48%), Gaps = 15/231 (6%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+++Y++SGGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P  P++   + 
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE- 59

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            +  GT+I F+P    F +   F    L K  +  ++L+  V      ++   E      
Sbjct: 60  SDTTGTQIHFKPSADTFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE------ 112

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
            E F + GGL+ +++    N++ ++           G     VE A+ W +     +  +
Sbjct: 113 -ELFKYEGGLRAFVEYLNTNKTPVNQVFHFNIQRDDGI---GVEIALQWNDSFNENLLCF 168

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
            N I   +GGTH  G R ALTR +  Y E      K  ++   DD      
Sbjct: 169 TNNIPQRDGGTHLVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLT 219


>gi|331029385|gb|AEC49842.1| DNA gyrase beta subunit [Bradyrhizobium elkanii]
 gi|331029387|gb|AEC49843.1| DNA gyrase beta subunit [Bradyrhizobium sp. SEMIA 696]
 gi|331029393|gb|AEC49846.1| DNA gyrase beta subunit [Bradyrhizobium sp. SEMIA 6053]
          Length = 227

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 75/236 (31%), Positives = 119/236 (50%), Gaps = 10/236 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS +L + + R +     +F+ G  ++PL+       KRGT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSSKLALRIWRDDKEHYIEFAHGDAVAPLKVVGDAPGKRGTE 60

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           +TF    + F +   +D A L    +  A+L+  V    S  +   EK      EE ++ 
Sbjct: 61  VTFLASVETFKN-IEYDFATLEHRLRELAFLNSGVNIVLSDMRHAVEKR-----EEMHYS 114

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTD 325
           GG++ +++    N+  I       ++E  G     VE A+ W +   E    + N I   
Sbjct: 115 GGVEEFVKYLDRNKKAIVPAPIMVRSEANGI---GVEAALWWNDSYHENVLCFTNNIPQR 171

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
           +GGTH +G R ALTR +  YAE    K  I++  DD       +LSV + +P+F+ 
Sbjct: 172 DGGTHLAGFRGALTRQVNGYAEANAKKEKIALTGDDCREGLTAVLSVKVPDPKFSS 227


>gi|195934664|gb|ACG58691.1| DNA gyrase subunit B [Photorhabdus temperata subsp. tasmaniensis]
 gi|195934666|gb|ACG58692.1| DNA gyrase subunit B [Photorhabdus temperata subsp. tasmaniensis]
          Length = 287

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 86/298 (28%), Positives = 142/298 (47%), Gaps = 15/298 (5%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            +  Q +  G+P SPL+   +   + GTR+ F P    F +   F    L K  +  ++L
Sbjct: 1   KVHEQTYHLGVPQSPLKVVGET-EQTGTRVRFWPSMDTFSNNTEFQHDILAKRLRELSFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V       +   E       + F++ GG+K +++   +N++ I   +F   TEK   
Sbjct: 60  NSGVSIRLLDKRTNIE-------DHFHYEGGIKAFVEFLNKNKTPIHPNVFYFSTEKDSI 112

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRA 354
               VE A+ W +     I  + N I   +GGTH  G R A+TR +  Y +      K  
Sbjct: 113 ---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSK 169

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +S   DD     V ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +
Sbjct: 170 VSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPND 229

Query: 415 ATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           A  ++  +I+        R+ +    RK A+    LPGKLADC +     +EL++VEG
Sbjct: 230 AKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|218681055|ref|ZP_03528952.1| DNA gyrase subunit B [Rhizobium etli CIAT 894]
          Length = 302

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 4/88 (4%)

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           + +L+     G+  + + R+KGLGEM A QL ET +D N R+LL+V++N       D   
Sbjct: 218 RALLDAIFATGRKGLTMQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVNDAT----DADG 273

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
              +LMG + + R +FIQ+ A  + ++ 
Sbjct: 274 LFARLMGDEVEPRREFIQDNALSVANLD 301



 Score = 89.1 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 36/50 (72%)

Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601
            +LLLTFF+++M +LIE+ HL++  PPL+++++G    Y  DE+  ++ L
Sbjct: 10  RTLLLTFFFRQMPELIERGHLYIAQPPLYKVSRGKSVQYLKDEKALEEYL 59


>gi|224496222|gb|ACN52492.1| gyrB [Klebsiella sp. CECT 4842]
          Length = 246

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 71/257 (27%), Positives = 125/257 (48%), Gaps = 14/257 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
            N I  Q ++ G+P +PL    +     GT + F P  + F +   F+   L K  +  +
Sbjct: 1   DNKIHRQLYAHGVPQAPLAVTGETEK-TGTMVRFWPSYETFTNVVEFEYEILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++  E       + F++ GG+K +++   +N++ I   IF   TEK 
Sbjct: 60  FLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +  + YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLNEYLLENP 229

Query: 413 IEATKLLEWVIERSEER 429
            +A  ++  +I+ +  R
Sbjct: 230 SDAKIVVGKIIDAARAR 246


>gi|224496200|gb|ACN52481.1| gyrB [Enterobacter sp. ATCC 27993]
 gi|224496202|gb|ACN52482.1| gyrB [Enterobacter sp. ATCC 27994]
          Length = 246

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 69/257 (26%), Positives = 121/257 (47%), Gaps = 14/257 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL          GT + F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHRQIYQHGVPEAPLAVTGDTEK-TGTLVRFWPSLETFTNVTEFEYEILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++  E       + F++ GG+K +++   +N++ I   IF   TEK 
Sbjct: 60  FLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL +NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSDYLQENP 229

Query: 413 IEATKLLEWVIERSEER 429
            +A  ++  +I+ +  R
Sbjct: 230 SDAKIVVGKIIDAARAR 246


>gi|18389180|gb|AAL67649.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389182|gb|AAL67650.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389184|gb|AAL67651.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389186|gb|AAL67652.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389188|gb|AAL67653.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389190|gb|AAL67654.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389192|gb|AAL67655.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389194|gb|AAL67656.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389196|gb|AAL67657.1| DNA topoisomerase IV subunit [Escherichia coli]
          Length = 158

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 66/155 (42%), Positives = 95/155 (61%), Gaps = 3/155 (1%)

Query: 421 WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
             I  ++ R+R    ++V RK       LPGKLADC+    + TELF+VEGDSAGGSAKQ
Sbjct: 6   MAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQ 63

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
           AR+R  QA++PL+GKILN     S+++  +Q++ D+  A+G    S      LRY K+ I
Sbjct: 64  ARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDL-SQLRYGKICI 122

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575
           + DAD DG HIA+LL   F +    L++  H+++ 
Sbjct: 123 LADADSDGLHIATLLCALFVKHFRALVKHGHVYVA 157


>gi|219963036|gb|ACL68106.1| DNA gyrase subunit B [Xenorhabdus hominickii]
 gi|219963038|gb|ACL68107.1| DNA gyrase subunit B [Xenorhabdus hominickii]
 gi|219963040|gb|ACL68108.1| DNA gyrase subunit B [Xenorhabdus hominickii]
          Length = 287

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 86/298 (28%), Positives = 141/298 (47%), Gaps = 15/298 (5%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            +  Q +  G+P SPL+         GT + F P    F     F+   L K  +  ++L
Sbjct: 1   KVHEQTYCHGVPQSPLKVVGDT-EHTGTTVRFWPSMDTFKINTEFEYDILAKRLRELSFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V       +  AE       + F++ GG+K +++    N++ I S +F   TEK G 
Sbjct: 60  NSGVSIRLVDKRTNAE-------DHFHYEGGIKAFVEFLSRNKNPIHSNVFYFSTEKDGI 112

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRA 354
               VE ++ W +     I  + N I   +GGTH  G R A+TR +  Y +      K  
Sbjct: 113 ---GVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSK 169

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +
Sbjct: 170 VSATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPND 229

Query: 415 ATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           A  ++  +I+        R+ +    RK A+    LPGKLADC +     +EL++VEG
Sbjct: 230 AKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|170015639|emb|CAP05257.1| DNA gyrase B subunit [Ochrobactrum anthropi]
          Length = 156

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/93 (43%), Positives = 61/93 (65%)

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  L  ++G      +  + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE+ H+
Sbjct: 4   ITALGTSIGKDETHGFNPDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHI 63

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605
           ++  PPL+++++G  S Y  +E   +  L E  
Sbjct: 64  YIAQPPLYKVSRGKSSQYIKNEAAFEDFLIETG 96


>gi|195934660|gb|ACG58689.1| DNA gyrase subunit B [Photorhabdus temperata subsp. temperata]
 gi|195934662|gb|ACG58690.1| DNA gyrase subunit B [Photorhabdus temperata subsp. temperata]
          Length = 287

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 86/298 (28%), Positives = 142/298 (47%), Gaps = 15/298 (5%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            +  Q +  G+P SPL+   +   + GTR+ F P    F +   F    L K  +  ++L
Sbjct: 1   KVHEQTYHLGVPQSPLKVVGET-EQTGTRVRFWPSMDTFSNNTEFQHDILAKRLRELSFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V       +   E       + F++ GG+K +++   +N++ I   +F   TEK   
Sbjct: 60  NSGVSIRLLDKRTNIE-------DHFHYKGGIKAFVEFLNKNKTPIHPNVFYFSTEKDSI 112

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRA 354
               VE A+ W +     I  + N I   +GGTH  G R A+TR +  Y +      K  
Sbjct: 113 ---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSK 169

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +S   DD     V ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +
Sbjct: 170 VSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPND 229

Query: 415 ATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           A  ++  +I+        R+ +    RK A+    LPGKLADC +     +EL++VEG
Sbjct: 230 AKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|170015637|emb|CAP05256.1| DNA gyrase B subunit [Ochrobactrum grignonense]
          Length = 156

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/93 (43%), Positives = 61/93 (65%)

Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572
           I  L  ++G      +  + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE+ H+
Sbjct: 4   ITALGTSIGKDESHGFNPDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHI 63

Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605
           ++  PPL+++++G  S Y  +E   +  L E  
Sbjct: 64  YIAQPPLYKVSRGKSSQYIKNEAAFEDFLIETG 96


>gi|148990419|ref|ZP_01821585.1| DNA gyrase subunit B [Streptococcus pneumoniae SP6-BS73]
 gi|147924324|gb|EDK75417.1| DNA gyrase subunit B [Streptococcus pneumoniae SP6-BS73]
          Length = 70

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 49/59 (83%)

Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99
          + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL  E++DN++DE +AG+A+ I+V
Sbjct: 10 AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQV 68


>gi|321473409|gb|EFX84376.1| hypothetical protein DAPPUDRAFT_670 [Daphnia pulex]
          Length = 667

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/214 (23%), Positives = 89/214 (41%), Gaps = 19/214 (8%)

Query: 464 TELFIVEGDSAGGSAKQARNRSNQ---AVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520
             LF+ EGDS          +       V PL  K+LNV  A SE+I  N ++ +L++ L
Sbjct: 27  CTLFLTEGDSVKAVVVSGLEKIGYDKNGVFPLGRKLLNVRVATSEQIAKNLEVNNLMKIL 86

Query: 521 GCRTRSQYREED----LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576
           G     +Y   +    LRY +++IMTD D DGA    L++ F +     L+    L    
Sbjct: 87  GLEYGKKYDTVEDLKSLRYGRLVIMTDPDPDGAQFKGLIINFLHYNWPSLLRLPFLQQFV 146

Query: 577 PPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632
            P+ + T+G     +S+  +  +  ++   + +        I  +KGL  +   ++KE  
Sbjct: 147 IPIVKATKGIGELAESLTFYSLDEFEQW--KTQTENWRHYHIKHYKGLETLRKEEVKECF 204

Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK 666
            +  +  +         +   D   +I+     K
Sbjct: 205 SNLQRHQI------DFRHGGDDDDRAISMAFNNK 232


>gi|223674636|gb|ACN13014.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674646|gb|ACN13019.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
          Length = 220

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 111/231 (48%), Gaps = 15/231 (6%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+++Y++SGGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P  P++   + 
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE- 59

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            +  GT+I F+P    F +   F    L K  +  ++L+  V      ++   E      
Sbjct: 60  SDTTGTQIHFKPSADTFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE------ 112

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
            E F + GGL+ +++    N++ ++           G     VE A+ W +     +  +
Sbjct: 113 -ELFKYEGGLRAFVEYLNTNKTPVNQVFHFNIQRDDGI---GVEIALQWNDSFNENLLCF 168

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
            N I   +GGTH  G R ALTR +  Y E      K  ++   DD      
Sbjct: 169 TNNIPQRDGGTHLVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLT 219


>gi|214011042|gb|ACJ61296.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|214011044|gb|ACJ61297.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674600|gb|ACN12996.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674602|gb|ACN12997.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674604|gb|ACN12998.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674606|gb|ACN12999.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674608|gb|ACN13000.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674610|gb|ACN13001.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674612|gb|ACN13002.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674614|gb|ACN13003.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674616|gb|ACN13004.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674618|gb|ACN13005.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674642|gb|ACN13017.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674648|gb|ACN13020.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674650|gb|ACN13021.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674654|gb|ACN13023.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674656|gb|ACN13024.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674668|gb|ACN13030.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674674|gb|ACN13033.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674684|gb|ACN13038.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674686|gb|ACN13039.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
 gi|223674688|gb|ACN13040.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
          Length = 221

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 111/231 (48%), Gaps = 15/231 (6%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+++Y++SGGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P  P++   + 
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE- 59

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            +  GT+I F+P    F +   F    L K  +  ++L+  V      ++   E      
Sbjct: 60  SDTTGTQIHFKPSADTFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE------ 112

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
            E F + GGL+ +++    N++ ++           G     VE A+ W +     +  +
Sbjct: 113 -ELFKYEGGLRAFVEYLNTNKTPVNQVFHFNIQRDDGI---GVEIALQWNDSFNENLLCF 168

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
            N I   +GGTH  G R ALTR +  Y E      K  ++   DD      
Sbjct: 169 TNNIPQRDGGTHLVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLT 219


>gi|223674744|gb|ACN13068.1| DNA gyrase subunit B [Pseudomonas sp. 2156]
          Length = 219

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 111/231 (48%), Gaps = 15/231 (6%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKF +++Y++SGGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P +P+      
Sbjct: 1   GGKFXDNSYKVSGGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGD- 59

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
               GT+I F+P  + F +   F    L K  +  ++L+  V      ++   E      
Sbjct: 60  SETTGTQIHFKPSAETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE------ 112

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
            E F + GGL+ +++    N++ ++         + G     VE A+ W +     +  +
Sbjct: 113 -ELFKYEGGLRAFVEYLNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCF 168

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
            N I   +GGTH  G R ALTR +  Y E      K  ++   DD      
Sbjct: 169 TNNIPQRDGGTHLVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLT 219


>gi|169248036|gb|ACA51801.1| DNA gyrase subunit B [Aliivibrio wodanis]
          Length = 305

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 106/298 (35%), Positives = 154/298 (51%), Gaps = 12/298 (4%)

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           +I F P  + F +   F    L K  +  ++L+  V       +E        + + F F
Sbjct: 16  KIRFWPSDQTFTNV-EFVYEILAKRLRELSFLNSGVSIILQDMRE------EDKSDHFMF 68

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG++ ++     N++ +  +IF    E+K      VE A+ W +     I  Y N I  
Sbjct: 69  EGGIQAFVTHLNRNKTPVHQKIFYFDAERK-EDGIVVEVAMQWNDSYQENIFCYTNNIPQ 127

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GG H SG R ALTR +  + +      K   S   DD       ++SV + +P+F+ Q
Sbjct: 128 RDGGAHLSGFRSALTRTLNTFMDKEGFSKKAKSSASGDDAREGLTAVVSVKVPDPKFSSQ 187

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRK 441
           TK KLVS + +  VE+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK
Sbjct: 188 TKDKLVSSEVKSAVESAMNEKLAEFLAENPGEAKMVCSKIIDAARAREAARKAREMTRRK 247

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
            A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV
Sbjct: 248 GALDIAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNV 305


>gi|195934654|gb|ACG58686.1| DNA gyrase subunit B [Photorhabdus temperata subsp. thracensis]
 gi|195934656|gb|ACG58687.1| DNA gyrase subunit B [Photorhabdus temperata subsp. thracensis]
          Length = 287

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 86/298 (28%), Positives = 142/298 (47%), Gaps = 15/298 (5%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            +  Q +  G+P +PL+   +   + GTR+ F P    F D   F    L K  +  ++L
Sbjct: 1   KVHEQTYHLGVPQNPLKVVGET-EQTGTRVRFWPSMDTFRDNTEFQHDILAKRLRELSFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V       +   E       + F++ GG+K +++   +N++ I   +F   TEK   
Sbjct: 60  NSGVSIRLLDKRTNIE-------DHFHYEGGIKAFVEFLNKNKTPIHPNVFYFSTEKDSI 112

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRA 354
               VE A+ W +     I  + N I   +GGTH  G R A+TR +  Y +      K  
Sbjct: 113 ---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSK 169

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +S   DD     V ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +
Sbjct: 170 VSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPND 229

Query: 415 ATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           A  ++  +I+        R+ +    RK A+    LPGKLADC +     +EL++VEG
Sbjct: 230 AKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|223674714|gb|ACN13053.1| DNA gyrase subunit B [Pseudomonas sp. 2220]
 gi|223674728|gb|ACN13060.1| DNA gyrase subunit B [Pseudomonas sp. 2102]
 gi|223674734|gb|ACN13063.1| DNA gyrase subunit B [Pseudomonas sp. 2108]
          Length = 221

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 112/231 (48%), Gaps = 15/231 (6%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+++Y++SGGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P  P++     
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGD- 59

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
               GT+I F+P  + F +   F    L K  +  ++L+  V      ++   E      
Sbjct: 60  SESTGTQIHFKPSAETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE------ 112

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
            E F + GGL+ +++    N++ ++         + G     VE A+ W +     +  +
Sbjct: 113 -ELFKYEGGLRAFVEYLNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCF 168

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
            N I   +GGTH  G R ALTR +  Y E      K  ++   DD      
Sbjct: 169 TNNIPQRDGGTHLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLT 219


>gi|219963064|gb|ACL68120.1| DNA gyrase subunit B [Xenorhabdus bovienii]
          Length = 287

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 82/298 (27%), Positives = 140/298 (46%), Gaps = 15/298 (5%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            +  Q +  G+P +PL+       + GT + F P    F     F+   L K  +  ++L
Sbjct: 1   KVHEQTYQHGVPQAPLKMVGDT-EQTGTTVRFWPSMDTFKLNTEFEYDILAKRLRELSFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V       +  AE       + F++ GG+K +++    N++ I   +F   TEK G 
Sbjct: 60  NSGVSIRLVDKRTNAE-------DHFHYEGGIKAFVEFLSRNKTPIHPNVFYFSTEKDGI 112

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRA 354
               VE ++ W +     I  + N I   +GG H  G R A+TR +  Y +      K  
Sbjct: 113 ---GVEISMQWNDGFQENIYCFTNNIPQRDGGAHLVGFRAAMTRTLNSYMDKEGYNKKSK 169

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           ++   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +
Sbjct: 170 VNATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETQMNEKLVEYLLENPND 229

Query: 415 ATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           A  ++  +I+        R+ +    RK A+    LPGKLADC +     +EL++VEG
Sbjct: 230 AKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|331029397|gb|AEC49848.1| DNA gyrase beta subunit [Bradyrhizobium sp. SEMIA 6145]
          Length = 227

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 73/236 (30%), Positives = 118/236 (50%), Gaps = 10/236 (4%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS +L + + R +     +F+ G  ++PL+       KRGT 
Sbjct: 1   SYKVSGGLHGVGVSVVNALSSKLALRIWRDDKEHYIEFAHGDAVAPLKVVGDAPGKRGTE 60

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           +TF    + F +   +D A L    +  A+L+  V    S  +   EK      EE ++ 
Sbjct: 61  VTFLASVETFKN-IEYDFATLEHRLRELAFLNSGVNIVLSDMRHAVEKR-----EEMHYS 114

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTD 325
           GG++ +++    N+  I       ++E  G     VE A+ W +   E    + N I   
Sbjct: 115 GGVEEFVKYLDRNKKAIVPAPIMVRSEANGI---GVEAALWWNDSYHENVLCFTNNIPQR 171

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
           +GGTH +G R ALTR +  YA+    K   ++  DD       +LSV + +P+F+ 
Sbjct: 172 DGGTHLAGFRGALTRQVNGYADANAKKEKXALTGDDCREGXTAVLSVKVPDPKFSS 227


>gi|158252632|gb|ABW23800.1| DNA gyrase [Pantoea septica]
          Length = 247

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 69/258 (26%), Positives = 125/258 (48%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL    +  +  GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHQQTYVHGVPQAPLNVTGET-DLTGTRVRFWPSHETFTNVVEFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + F++ GG+K +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLEDKRD-------GKNDHFHYDGGIKAFVEYLNKNKTPIHPNVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     V ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLVAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++  +I+ +  R 
Sbjct: 230 SDAKIVVGKIIDAARARE 247


>gi|329910863|ref|ZP_08275398.1| DNA gyrase subunit B [Oxalobacteraceae bacterium IMCC9480]
 gi|327546068|gb|EGF31140.1| DNA gyrase subunit B [Oxalobacteraceae bacterium IMCC9480]
          Length = 305

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654
               +++   ++  +  +   R+KGLGEM  SQL ET MD   R LL+V+I+  +     
Sbjct: 218 NDFHQVMAWLREEAERGVSKQRYKGLGEMNPSQLWETTMDPAVRRLLKVQIDDAI----A 273

Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685
                  LMG   + R  FI+  A    ++ 
Sbjct: 274 ADQIFTTLMGDDVEPRRAFIEANALQAGNID 304



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 42/68 (61%)

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKI 600
           MTDADVDGAHI +LLLT  Y++M  L+E+ H+++  PPL+++  G    Y  D+  +   
Sbjct: 1   MTDADVDGAHIRTLLLTLLYRQMPALVERGHVYIAQPPLYKVKHGRDERYLKDDIEEAAY 60

Query: 601 LEEFKKHG 608
           + +   + 
Sbjct: 61  MMQIALND 68


>gi|219963076|gb|ACL68126.1| DNA gyrase subunit B [Xenorhabdus cabanillasii]
          Length = 287

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 82/298 (27%), Positives = 139/298 (46%), Gaps = 15/298 (5%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            +  Q +  G+P +PL+       + GT + F P    F     F+   L K  +  ++L
Sbjct: 1   KVHEQTYHHGVPQAPLKVVGDT-EQTGTTVRFWPSMDTFKINTDFEFDILAKRLRELSFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V       +   E         F++ GG++ +++    N++ I   +F   TEK G 
Sbjct: 60  NSGVSIRLVDKRTNTEDL-------FHYEGGIRAFVEFLSRNKNPIHPNVFYFSTEKDGI 112

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRA 354
               VE ++ W +     I  + N I   +GGTH  G R A+TR +  Y +      K  
Sbjct: 113 ---GVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSK 169

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +
Sbjct: 170 VSATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETMMNEKLVEYLLENPND 229

Query: 415 ATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           A  ++  +I+        R+ +    RK A+    LPGKLADC +     +EL++VEG
Sbjct: 230 AKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|164456699|dbj|BAF97842.1| gyrase B subunit [Vibrio natriegens]
          Length = 261

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 76/271 (28%), Positives = 133/271 (49%), Gaps = 13/271 (4%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS+++ +T+ R   I +Q +  G P +PL       +K GT+I F P  + F +   F 
Sbjct: 1   ALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQIRFWPSSETFTN-TEFH 58

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L K  +  ++L+  V    S ++E        + + F + GG++ ++Q    N++ I
Sbjct: 59  YDILAKRLRELSFLNSGVSIKLSDERE------EDKHDHFMYEGGIQAFVQHLNTNKTPI 112

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
             +IF    E++     +VE A+ W +     I  + N I   +GGTH +G R ALTR +
Sbjct: 113 IEKIFHFNFERED--GISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRTL 170

Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE+A+
Sbjct: 171 NTFMDKEGFSRKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAM 230

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
            +    +LV+NP EA  +   +I+ +  R  
Sbjct: 231 GEKLSEFLVENPSEAKMVCSKIIDAARAREA 261


>gi|281332044|emb|CAZ39996.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 246

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 77/250 (30%), Positives = 128/250 (51%), Gaps = 13/250 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS +L V V +    + Q+FS G  ++ L K E     RGT + F P
Sbjct: 1   GGLHGVGVSVVNALSQKLLVDVFQNGFHYQQEFSNGAAVTALAKLETTTK-RGTTVRFWP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
               F D   F    L +  +  ++L+  VK   + ++          +++F++ GG+++
Sbjct: 60  STVAFHDNVEFHYDILARRLRELSFLNSGVKIVLADERGD------GRRDDFHYEGGIRS 113

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++   + ++ +   + +   E  G     V+ A+ W +     +  + N I   +GGTH
Sbjct: 114 FVEHLAQLKTPLHPNVISVTGEHNGI---VVDVALQWTDSYQETMYCFTNNIPQKDGGTH 170

Query: 331 ESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  Y E     +   I++  DD+    + +LSV + +P F+ QTK KLV
Sbjct: 171 LAGFRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLV 230

Query: 389 SLDAQRTVEN 398
           S D +  VEN
Sbjct: 231 SSDVRPAVEN 240


>gi|219963068|gb|ACL68122.1| DNA gyrase subunit B [Xenorhabdus mauleonii]
          Length = 287

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 83/298 (27%), Positives = 139/298 (46%), Gaps = 15/298 (5%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            +  Q +  G+P SPL+       + GT + F P    F     F+   L K  +  ++L
Sbjct: 1   KVHEQTYMHGVPQSPLKIVGDT-EQTGTTVRFWPSMDTFKINTEFEYDILAKRLRELSFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V       +   E         F++ GG+K +++    N++ +   +F   TEK G 
Sbjct: 60  NSGVSIRLVDKRTNTEDL-------FHYEGGIKAFVEFLSRNKNPLHPNVFYFSTEKDGI 112

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRA 354
               VE ++ W +     I  + N I   +GGTH  G R A+TR +  Y +      K  
Sbjct: 113 ---GVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDREGYNKKSK 169

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +
Sbjct: 170 VSATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPND 229

Query: 415 ATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           A  ++  +I+        R+ +    RK A+    LPGKLADC +     +EL++VEG
Sbjct: 230 AKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|315466378|emb|CBY84401.1| DNA gyrase beta subunit [Vibrio sp. PP-203]
 gi|315466380|emb|CBY84402.1| DNA gyrase beta subunit [Vibrio sp. PP-200]
          Length = 265

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 103/264 (39%), Positives = 151/264 (57%), Gaps = 6/264 (2%)

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           F GG++ ++     N++ I  +IF    E++     +VE A+ W +     I  + N I 
Sbjct: 2   FEGGIRAFVDHLNTNKTPIIDKIFHFDFERED--GISVEVAMQWNDGFQENIYCFTNNIP 59

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381
             +GGTH +G R ALTR +  + +      K   S   DD       ++SV + +P+F+ 
Sbjct: 60  QRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAVVSVKVPDPKFSS 119

Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNR 440
           QTK KLVS + +  VE+A+ +    +LV+NP EA  +   +I+ +  R   RK R    R
Sbjct: 120 QTKDKLVSSEVKSAVESAMGEKLSEFLVENPAEAKMVCSKIIDAARAREAARKAREMTRR 179

Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500
           K A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV 
Sbjct: 180 KGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVE 239

Query: 501 SAGSEKIRNNQQIMDLVQALGCRT 524
            A  +K+ ++Q++  L+ ALGC  
Sbjct: 240 KARFDKMLSSQEVATLITALGCGI 263


>gi|224496312|gb|ACN52537.1| gyrB [Pantoea agglomerans]
          Length = 246

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 68/257 (26%), Positives = 125/257 (48%), Gaps = 14/257 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL    +  +  GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHQQVYVHGVPQAPLAVTGET-DITGTRVRFWPSHETFTNVRDFEYEILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + F++ GG++ +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLDDKRD-------GKSDHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y E      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSAMTRTLNAYMEKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLAKYLLENP 229

Query: 413 IEATKLLEWVIERSEER 429
            +A  ++  +I+ +  R
Sbjct: 230 SDAKIVVGKIIDAARAR 246


>gi|224496210|gb|ACN52486.1| gyrB [Enterobacter sp. CIP 102343]
          Length = 246

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 68/257 (26%), Positives = 122/257 (47%), Gaps = 14/257 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL          GT + F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHQQTYVHGVPQAPLAVTGDT-EATGTLVRFWPSHETFTNVIEFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++  E       + F++ GG+K +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLKDKRDGKE-------DHFHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENP 229

Query: 413 IEATKLLEWVIERSEER 429
            +A  ++  +I+ +  R
Sbjct: 230 SDAKIVVGKIIDAARAR 246


>gi|219963056|gb|ACL68116.1| DNA gyrase subunit B [Xenorhabdus bovienii]
 gi|219963058|gb|ACL68117.1| DNA gyrase subunit B [Xenorhabdus bovienii]
          Length = 287

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 82/298 (27%), Positives = 140/298 (46%), Gaps = 15/298 (5%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            +  Q +  G+P +PL+       + GT + F P    F     F+   L K  +  ++L
Sbjct: 1   KVHEQTYQHGVPQAPLKMVGDT-EQTGTTVRFWPSMDTFKLNTEFEYDILAKRLRELSFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V       +  AE       + F++ GG+K +++    N++ I   +F   TEK G 
Sbjct: 60  NSGVSIRLVDRRTNAE-------DHFHYEGGIKAFVEFLSRNKTPIHPNVFYFSTEKDGI 112

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRA 354
               VE ++ W +     I  + N I   +GG H  G R A+TR +  Y +      K  
Sbjct: 113 ---GVEISMQWNDGFQENIYCFTNNIPQRDGGAHLVGFRAAMTRTLNSYMDKEGYNKKSK 169

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           ++   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +
Sbjct: 170 VNATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETQMNEKLVEYLLENPND 229

Query: 415 ATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           A  ++  +I+        R+ +    RK A+    LPGKLADC +     +EL++VEG
Sbjct: 230 AKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|223674732|gb|ACN13062.1| DNA gyrase subunit B [Pseudomonas sp. 2104]
          Length = 221

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 71/233 (30%), Positives = 112/233 (48%), Gaps = 15/233 (6%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+++Y++SGGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P +P+      
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGD- 59

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
               GT+I F+   + F +   F    L K  +  ++L+  V      ++   E      
Sbjct: 60  SETTGTQIHFKASSETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE------ 112

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
            E F + GGL+ +++    N++ ++         + G     VE A+ W +     +  +
Sbjct: 113 -ELFKYEGGLRAFVEYLNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCF 168

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369
            N I   +GGTH  G R ALTR +  Y E      K  ++   DD       I
Sbjct: 169 TNNIPQRDGGTHLVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTXI 221


>gi|157060428|gb|ABV03220.1| GyrB [Chlamydia trachomatis]
          Length = 262

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 9/97 (9%)

Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
            +     +++++  K  G+  IEI R+KGLGEM A QL +T M+  +RTL+RV +   + 
Sbjct: 172 CYT---LKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAV- 227

Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFI--DDVG 685
              +       LMG +   R +FI+  A  I  +++ 
Sbjct: 228 ---EADHIFTMLMGEEVPPRREFIKSHALSIRMNNLD 261



 Score = 41.7 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 7/33 (21%), Positives = 12/33 (36%)

Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607
             PPL+R+++     Y   E+     L      
Sbjct: 1   AQPPLYRVSKKKDFRYILSEKEMDGYLLNLGTK 33


>gi|219963086|gb|ACL68131.1| DNA gyrase subunit B [Xenorhabdus stockiae]
          Length = 287

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 85/298 (28%), Positives = 140/298 (46%), Gaps = 15/298 (5%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            +  Q +  G+P SPL+       + GT + F P    F     F+   L K  +  ++L
Sbjct: 1   KVHEQTYQHGVPQSPLKVVGDT-EQTGTTVRFWPSMDTFKINTEFEYDILAKRLRELSFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V       +  AE         F++ GG+K +++    N++ I   +F   TEK G 
Sbjct: 60  NSGVSIRLVDKRTNAEDL-------FHYEGGIKAFVEYLSRNKNPIHQNVFYFSTEKDGI 112

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRA 354
               VE ++ W +     I  + N I   +GGTH  G R A+TR +  Y +      K  
Sbjct: 113 ---GVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSK 169

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +
Sbjct: 170 VSATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPND 229

Query: 415 ATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           A  ++  +I+        R+ +    RK A+    LPGKLADC +     +EL++VEG
Sbjct: 230 AKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPAHSELYLVEG 287


>gi|224496296|gb|ACN52529.1| gyrB [Pantoea agglomerans]
 gi|224496304|gb|ACN52533.1| gyrB [Pantoea agglomerans]
          Length = 246

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 68/257 (26%), Positives = 125/257 (48%), Gaps = 14/257 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL    +  +  GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   EPKVHQQIYVHGVPQAPLAVTGET-DITGTRVRFWPSHETFTNVRDFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + F++ GG++ +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLDDKRD-------GKSDHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y E      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSAMTRTLNAYMEKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEER 429
            +A  ++  +I+ +  R
Sbjct: 230 SDAKIVVGKIIDAARAR 246


>gi|157060432|gb|ABV03222.1| GyrB [Chlamydia trachomatis]
          Length = 261

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 9/97 (9%)

Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
            +     +++++  K  G+  IEI R+KGLGEM A QL +T M+  +RTL+RV +   + 
Sbjct: 171 CYT---LKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAV- 226

Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFI--DDVG 685
              +       LMG +   R +FI+  A  I  +++ 
Sbjct: 227 ---EADHIFTMLMGEEVPPRREFIKSHALSIRMNNLD 260



 Score = 40.2 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 7/32 (21%), Positives = 12/32 (37%)

Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607
            PPL+R+++     Y   E+     L      
Sbjct: 1   QPPLYRVSKKKDFRYILSEKEMDGYLLNLGTK 32


>gi|164456763|dbj|BAF97874.1| gyrase B subunit [Vibrio pacinii]
          Length = 262

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 78/271 (28%), Positives = 135/271 (49%), Gaps = 12/271 (4%)

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+++ +T+ R+  IF Q +  G+P SPL    K     GTRI F P  + F +  
Sbjct: 1   VVNALSEKVELTIKRKGEIFQQIYHHGVPQSPLTVIGKTEE-TGTRIRFWPSEETFTN-I 58

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L K  +  ++L+  V    + ++E        + + F F GG++ +++    N+
Sbjct: 59  EFHYDILAKRLRELSFLNSGVSIKLTDERE------EDKSDHFMFEGGIRAFVEHLNRNK 112

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + I  +IF     ++     TVE A+ W +     +  + N I   +GGTH +G R ALT
Sbjct: 113 TPIHQKIFYFDHTRE-EDGITVEVAMQWNDGFQEGVYCFTNNIPQRDGGTHLAGFRGALT 171

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE
Sbjct: 172 RTLNNFMDKEGYSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 231

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           +A+ +    +L++NP EA  +   +I+ +  
Sbjct: 232 SAMSEKLSEFLIENPTEAKIVCGKIIDAARA 262


>gi|157060430|gb|ABV03221.1| GyrB [Chlamydia trachomatis]
          Length = 260

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 9/97 (9%)

Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650
            +     +++++  K  G+  IEI R+KGLGEM A QL +T M+  +RTL+RV +   + 
Sbjct: 170 CYT---LKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAV- 225

Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFI--DDVG 685
              +       LMG +   R +FI+  A  I  +++ 
Sbjct: 226 ---EADHIFTMLMGEEVPPRREFIKSHALSIRMNNLD 259



 Score = 38.3 bits (87), Expect = 4.1,   Method: Composition-based stats.
 Identities = 7/31 (22%), Positives = 12/31 (38%)

Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607
           PPL+R+++     Y   E+     L      
Sbjct: 1   PPLYRVSKKKDFRYILSEKEMDGYLLNLGTK 31


>gi|164456717|dbj|BAF97851.1| gyrase B subunit [Listonella pelagia]
          Length = 260

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 76/270 (28%), Positives = 130/270 (48%), Gaps = 13/270 (4%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS ++ +T+ R   I +Q +  G P +PL    +  +K GT I F P  + F +   F
Sbjct: 1   NALSKQVTLTIHRGGQIHTQTYHHGEPQAPLAVIGET-DKTGTEIRFWPSEETFSN-TEF 58

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  ++L+  V      ++E        + + F F GG++ +++    N++ 
Sbjct: 59  HYDILAKRLRELSFLNSGVSIKLRDERE------EDKGDHFMFEGGIQAFVEHLNTNKTP 112

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           I  +IF    E+      TVE A+ W +     I  + N I   +GGTH +G R ALTR 
Sbjct: 113 IIQKIFHFDNERDD--GITVEVAMQWNDGYQENIYCFTNNIPQRDGGTHLAGFRAALTRT 170

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE A
Sbjct: 171 LNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQA 230

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           + +    +L++NP EA  +   +I+ +  R
Sbjct: 231 MGEKLSEFLIENPAEAKTVCTKIIDAARAR 260


>gi|189418939|gb|ACD93715.1| gyrase B subunit [Vibrio rhizosphaerae]
          Length = 237

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 74/246 (30%), Positives = 122/246 (49%), Gaps = 14/246 (5%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVGISVVNALS+++ +T+ R   I SQ +  G+P +PL          GT + F 
Sbjct: 1   SGGLHGVGISVVNALSEKVVLTIHRNGHIHSQTYRHGVPQAPLAVVGDTEK-SGTMVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F    L K  +  ++L+  V      +++        +++ F + GG++
Sbjct: 60  PSNETFTN-TEFHYEILAKRLRELSFLNSGVSIKLIDERDS-------KQDHFMYEGGIR 111

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            ++     N++ I   +F    E++     TVE A+ W +     I  + N I   +GGT
Sbjct: 112 AFVSHLNRNKTPIHERVFHFNQERED--GITVEVAMQWNDSFQESIFCFTNNIPQRDGGT 169

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QTK KL
Sbjct: 170 HMAGFRAALTRTLNSFMDKEGFSKKEKTATSGDDAREGLTAVISVKVPDPKFSSQTKDKL 229

Query: 388 VSLDAQ 393
           VS + +
Sbjct: 230 VSSEVK 235


>gi|224496342|gb|ACN52552.1| gyrB [Pantoea septica]
 gi|224496344|gb|ACN52553.1| gyrB [Pantoea sp. ATCC 29923]
          Length = 246

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 69/257 (26%), Positives = 125/257 (48%), Gaps = 14/257 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL    +  +  GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHQQTYVHGVPEAPLNVTGET-DLTGTRVRFWPSHETFTNVVEFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + F++ GG+K +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLEDKRD-------GKSDHFHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     V ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLVAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENP 229

Query: 413 IEATKLLEWVIERSEER 429
            +A  ++  +I+ +  R
Sbjct: 230 SDAKIVVGKIIDAARAR 246


>gi|158252630|gb|ABW23799.1| DNA gyrase [Pantoea septica]
          Length = 247

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 69/258 (26%), Positives = 125/258 (48%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL    +  +  GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHQQTYVHGVPEAPLNVTGET-DLTGTRVRFWPSHETFTNVVEFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + F++ GG+K +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLEDKRD-------GKADHFHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     V ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLVAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++  +I+ +  R 
Sbjct: 230 SDAKIVVGKIIDAARARE 247


>gi|16151083|gb|AAK11730.1| GyrB [Campylobacter concisus]
          Length = 122

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 4/87 (4%)

Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658
            +L+E +K+ K    I R+KGLGEM   QL ET M+   R LL+++IN  +       D+
Sbjct: 39  DVLDEVEKNAKKGAYIQRYKGLGEMNPEQLWETTMNPENRRLLKIDINDAI----SASDT 94

Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685
            N  MG + + R  +IQ+ A  +  + 
Sbjct: 95  FNLFMGDEVEPRRNYIQDHAKDVKHLD 121


>gi|224496260|gb|ACN52511.1| gyrB [Pantoea agglomerans]
          Length = 246

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 68/257 (26%), Positives = 125/257 (48%), Gaps = 14/257 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL    +  +  GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHQQIYVHGVPQAPLAVTGET-DITGTRVRFWPSHETFTNVRDFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + F++ GG++ +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLDDKRD-------GKSDHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y E      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSAMTRTLNAYMEKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEER 429
            +A  ++  +I+ +  R
Sbjct: 230 SDAKIVVGTIIDAARAR 246


>gi|158252634|gb|ABW23801.1| DNA gyrase [Pantoea septica]
 gi|158252652|gb|ABW23810.1| DNA gyrase [Pantoea septica]
          Length = 247

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 69/258 (26%), Positives = 125/258 (48%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL    +  +  GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHQQTYVHGVPEAPLNVTGET-DLTGTRVRFWPSHETFTNVVEFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + F++ GG+K +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLEDKRD-------GKSDHFHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     V ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLVAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++  +I+ +  R 
Sbjct: 230 SDAKIVVGKIIDAARARE 247


>gi|224496208|gb|ACN52485.1| gyrB [Brenneria rubrifaciens]
          Length = 246

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 70/257 (27%), Positives = 125/257 (48%), Gaps = 14/257 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  I  Q ++ G+P +PL       +K GT + F P  + F +   F+   L K  +  +
Sbjct: 1   EGKIHRQVYTHGVPQAPLAVTGDT-DKTGTLVRFWPSHETFTNVTEFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++  E       + F++ GG++ +++   +N++ I   IF   TEK 
Sbjct: 60  FLNSGVSIRLKDKRDGKE-------DHFHYEGGIRAFVEYLNKNKTPIHPNIFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENP 229

Query: 413 IEATKLLEWVIERSEER 429
            +A  ++  +I+ +  R
Sbjct: 230 SDAKIVVGKIIDAARAR 246


>gi|164456753|dbj|BAF97869.1| gyrase B subunit [Grimontia hollisae]
          Length = 231

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 73/240 (30%), Positives = 119/240 (49%), Gaps = 13/240 (5%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS++L +T+ R   +  Q +  G+P  PLE         GTRI F P 
Sbjct: 1   GLHGVGVSVVNALSEKLELTIWRHGHVHQQIYRMGVPEKPLEVIGDTEE-TGTRIRFWPS 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
            + F D   F    L K  +  ++L+  V      ++E        + + F + GG++ +
Sbjct: 60  DETFSD-TTFHYDILAKRLRELSFLNSGVSIKLIDERE------ENKHDHFMYEGGIRAF 112

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++    N++ I   +F  + E++     +VE ++ W +     I  + N I   +GGTH 
Sbjct: 113 VEHLNRNKTPIHPTVFHFEHERED--GVSVEVSMQWNDGFQENIYCFTNNIPQRDGGTHL 170

Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G R ALTR +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS
Sbjct: 171 AGFRAALTRTLNNFMDKEGYSKKAKAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVS 230


>gi|223674718|gb|ACN13055.1| DNA gyrase subunit B [Pseudomonas sp. 2137]
 gi|223674720|gb|ACN13056.1| DNA gyrase subunit B [Pseudomonas sp. 2188]
          Length = 221

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 112/231 (48%), Gaps = 15/231 (6%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+++Y++SGGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P +P+    + 
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSELLVLTVRRSGKIWEQTYVHGVPQAPMAIVGE- 59

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
            +  GT+I F+P  + F +   F    L K  +  ++L+  V      ++   E      
Sbjct: 60  SDTTGTQIHFKPSAETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE------ 112

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
            E F + GGL+ ++     N++ ++         + G     VE A+ W +     +  +
Sbjct: 113 -ELFKYEGGLRAFVDYLNTNKTTVNQVFHFNVQREDGI---GVEVALQWNDSFNENLLCF 168

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
            N I   +GGTH  G R ALTR +  Y E      K  ++   DD      
Sbjct: 169 TNNIPQRDGGTHLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLT 219


>gi|224496252|gb|ACN52507.1| gyrB [Pantoea agglomerans]
 gi|224496254|gb|ACN52508.1| gyrB [Pantoea agglomerans]
 gi|224496256|gb|ACN52509.1| gyrB [Pantoea agglomerans]
 gi|224496258|gb|ACN52510.1| gyrB [Pantoea agglomerans]
 gi|224496262|gb|ACN52512.1| gyrB [Pantoea agglomerans]
 gi|224496264|gb|ACN52513.1| gyrB [Pantoea agglomerans]
 gi|224496266|gb|ACN52514.1| gyrB [Pantoea agglomerans]
 gi|224496268|gb|ACN52515.1| gyrB [Pantoea agglomerans pv. gypsophilae]
 gi|224496270|gb|ACN52516.1| gyrB [Pantoea agglomerans]
 gi|224496272|gb|ACN52517.1| gyrB [Pantoea agglomerans]
 gi|224496274|gb|ACN52518.1| gyrB [Pantoea agglomerans]
 gi|224496278|gb|ACN52520.1| gyrB [Pantoea agglomerans]
 gi|224496280|gb|ACN52521.1| gyrB [Pantoea agglomerans]
 gi|224496282|gb|ACN52522.1| gyrB [Pantoea agglomerans]
 gi|224496284|gb|ACN52523.1| gyrB [Pantoea agglomerans]
 gi|224496286|gb|ACN52524.1| gyrB [Pantoea agglomerans]
 gi|224496288|gb|ACN52525.1| gyrB [Pantoea agglomerans]
 gi|224496290|gb|ACN52526.1| gyrB [Pantoea agglomerans]
 gi|224496292|gb|ACN52527.1| gyrB [Pantoea agglomerans]
 gi|224496294|gb|ACN52528.1| gyrB [Pantoea agglomerans]
 gi|224496298|gb|ACN52530.1| gyrB [Pantoea agglomerans]
 gi|224496300|gb|ACN52531.1| gyrB [Pantoea agglomerans]
 gi|224496302|gb|ACN52532.1| gyrB [Pantoea agglomerans pv. gypsophilae]
 gi|224496306|gb|ACN52534.1| gyrB [Pantoea agglomerans]
 gi|224496308|gb|ACN52535.1| gyrB [Pantoea agglomerans]
          Length = 246

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 68/257 (26%), Positives = 125/257 (48%), Gaps = 14/257 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL    +  +  GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHQQIYVHGVPQAPLAVTGET-DITGTRVRFWPSHETFTNVRDFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + F++ GG++ +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLDDKRD-------GKSDHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y E      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSAMTRTLNAYMEKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEER 429
            +A  ++  +I+ +  R
Sbjct: 230 SDAKIVVGKIIDAARAR 246


>gi|218672910|ref|ZP_03522579.1| DNA gyrase subunit B [Rhizobium etli GR56]
          Length = 211

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 4/88 (4%)

Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657
           + +L+     G+  + + R+KGLGEM A QL ET +D N R+LL+V++        D   
Sbjct: 127 RALLDAIFASGRKGLSMQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVADAT----DADG 182

Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685
              +LMG + + R +FIQ+ A  + ++ 
Sbjct: 183 LFARLMGDEVEPRREFIQDNALSVANLD 210


>gi|158252498|gb|ABW23733.1| DNA gyrase [Pantoea agglomerans pv. betae]
 gi|158252546|gb|ABW23757.1| DNA gyrase [Pantoea agglomerans]
 gi|158252570|gb|ABW23769.1| DNA gyrase [Pantoea agglomerans pv. gypsophilae]
 gi|158252572|gb|ABW23770.1| DNA gyrase [Pantoea agglomerans]
 gi|158252578|gb|ABW23773.1| DNA gyrase [Pantoea agglomerans]
 gi|158252580|gb|ABW23774.1| DNA gyrase [Pantoea agglomerans]
 gi|158252582|gb|ABW23775.1| DNA gyrase [Pantoea agglomerans]
 gi|158252620|gb|ABW23794.1| DNA gyrase [Pantoea agglomerans]
          Length = 247

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 68/258 (26%), Positives = 125/258 (48%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL    +  +  GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHQQIYVHGVPQAPLAVTGET-DITGTRVRFWPSHETFTNVRDFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + F++ GG++ +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLDDKRD-------GKSDHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y E      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSAMTRTLNAYMEKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++  +I+ +  R 
Sbjct: 230 SDAKIVVGKIIDAARARE 247


>gi|190148852|gb|ACE63401.1| DNA gyrase B subunit [Pseudonocardia kongjuensis]
          Length = 356

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 103/360 (28%), Positives = 163/360 (45%), Gaps = 42/360 (11%)

Query: 182 QKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241
           Q +    P   +E     ++  GT IT+  DP IF     +    + +  Q + +L+  +
Sbjct: 1   QHYDHARPGELIEAGTTKKSDTGTTITYWADPTIFETT-SYTLETIRRRLQEQTFLNKGL 59

Query: 242 KTCWSCDKEIAEKYG----------------------------------IPEKEEFYFPG 267
                 ++   +                                      P++  F++P 
Sbjct: 60  TMVLRDERRPEKAAELLPSSDGVDEDGNPAEVVPVVDADEEPDAEGYVAKPKEYVFHYPN 119

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           GL+ ++    +++  I  +I +   E  G     VE A+ W       + ++ NTI T E
Sbjct: 120 GLEDFVAHLNKSKDPIHRKIVSYTGEGPGHQ---VEVAMQWNSGYSESVYTFANTINTHE 176

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTHE G R ALT  + +YA   +   ++  ++  DD+      I+SV I EP+F GQTK
Sbjct: 177 GGTHEEGFRHALTATVNRYARDKKLIKEKDPALSGDDIREGLAAIVSVKISEPQFEGQTK 236

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER-SEERLRRRKQREVNRKTA 443
           TKL + + +  V+    +    +  +NP EA  ++   +         RR +  V RK+A
Sbjct: 237 TKLGNTEVKSFVQRVSNEWLADWFERNPTEAKTIVNKAVSSAQARLAARRARELVRRKSA 296

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503
                LPGKL+DC        EL+IVEGDSAGGSAK  R+  +QA+LP+RGKI+NV  A 
Sbjct: 297 GDIGGLPGKLSDCRSRDPESCELYIVEGDSAGGSAKAGRDSMHQAILPIRGKIINVEKAR 356


>gi|281332074|emb|CAZ40011.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 236

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 73/246 (29%), Positives = 126/246 (51%), Gaps = 13/246 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS +L + + +    + Q+++ G  L PL++       RGT + F P
Sbjct: 1   GGLHGVGVSVVNALSQKLVLDIYQGGFHYQQEYADGAALHPLKQVGPSTK-RGTTLRFWP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             K F D   F    L +  +  ++L+  VK     ++          +++F++ GG+++
Sbjct: 60  SVKAFHDNVEFHYDILARRLRELSFLNSGVKIVLVDERGD------GRRDDFHYEGGIRS 113

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++   + ++ +   + +   E  G    TVE A+ W +     +  + N I   +GGTH
Sbjct: 114 FVEHLAQLKTPLHPNVISVTGESNGI---TVEVALQWTDSYQETMYCFTNNIPQKDGGTH 170

Query: 331 ESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  Y E     +   I++  DD+    + +LSV + +P F+ QTK KLV
Sbjct: 171 LAGFRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLV 230

Query: 389 SLDAQR 394
           S D + 
Sbjct: 231 SSDVRP 236


>gi|224496228|gb|ACN52495.1| gyrB [Enterobacter sp. ATCC 27985]
          Length = 246

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 68/257 (26%), Positives = 122/257 (47%), Gaps = 14/257 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  I  Q +  G+P +PL          GT + F P  + F +   F+   L K  +  +
Sbjct: 1   EGKIHRQIYQHGVPQAPLAVTGDTEK-TGTMVRFWPSLETFTNVTDFEYEILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++  E       + F++ GG++ +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLRDKRDNKE-------DHFHYEGGIRAFVEYLNKNKTPIHPNVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLSEYLLENP 229

Query: 413 IEATKLLEWVIERSEER 429
            +A  ++  +I+ +  R
Sbjct: 230 SDAKIVVGKIIDAARAR 246


>gi|224496250|gb|ACN52506.1| gyrB [Pantoea sp. C9-1]
          Length = 246

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 68/257 (26%), Positives = 124/257 (48%), Gaps = 14/257 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL       +  GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHQQIYVHGVPEAPLAVTGDT-DITGTRVRFWPSYETFTNVRDFEYEILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + F++ GG+K +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLEDKRD-------GKTDHFHYEGGIKAFVEYLNKNKTPIHPTVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEER 429
            +A  ++  +I+ +  R
Sbjct: 230 SDAKIVVGKIIDAARAR 246


>gi|158252622|gb|ABW23795.1| DNA gyrase [Pantoea vagans]
          Length = 247

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 68/258 (26%), Positives = 124/258 (48%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL       +  GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHQQIYVHGVPEAPLAVTGDT-DITGTRVRFWPSYETFTNVRDFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + F++ GG+K +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLEDKRD-------GKTDHFHYEGGIKAFVEYLNKNKTPIHPTVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++  +I+ +  R 
Sbjct: 230 SDAKIVVGKIIDAARARE 247


>gi|219963060|gb|ACL68118.1| DNA gyrase subunit B [Xenorhabdus bovienii]
 gi|219963062|gb|ACL68119.1| DNA gyrase subunit B [Xenorhabdus bovienii]
          Length = 287

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 83/298 (27%), Positives = 140/298 (46%), Gaps = 15/298 (5%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            +  Q +  G+P +PL+       + GT + F P    F     F+   L K  +  ++L
Sbjct: 1   KVHEQTYQHGVPQAPLKMVGDT-EQTGTTVRFWPSMDTFKLNTEFEYDILAKRLRELSFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V       +  AE       + F++ GG+K +++    N++ I   +F   TEK G 
Sbjct: 60  NSGVSIRLVDRRTNAE-------DHFHYEGGIKAFVEFLSRNKTPIHPNVFYFSTEKDGI 112

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRA 354
               VE ++ W +     I  + N I   +GG H  G R A+TR +  Y +      K  
Sbjct: 113 ---GVEISMQWNDGFQENIYCFTNNIPQRDGGAHLVGFRAAMTRTLNSYMDKEGYNKKSK 169

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +
Sbjct: 170 VSATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETQMNEKLVEYLLENPND 229

Query: 415 ATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           A  ++  +I+        R+ +    RK A+    LPGKLADC +     +EL++VEG
Sbjct: 230 AKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|158252474|gb|ABW23721.1| DNA gyrase [Pantoea eucalypti]
 gi|158252476|gb|ABW23722.1| DNA gyrase [Pantoea eucalypti]
 gi|158252500|gb|ABW23734.1| DNA gyrase [Pantoea eucalypti]
 gi|158252502|gb|ABW23735.1| DNA gyrase [Pantoea eucalypti]
 gi|158252504|gb|ABW23736.1| DNA gyrase [Pantoea eucalypti]
          Length = 247

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 67/258 (25%), Positives = 125/258 (48%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL    +  +  GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHQQVYVHGVPQAPLAVTGET-DITGTRVRFWPSHETFTNVRDFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + F++ GG++ +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLEDKRD-------GKNDHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++  +I+ +  R 
Sbjct: 230 SDAKIVVGKIIDAARARE 247


>gi|224496346|gb|ACN52554.1| gyrB [bacterium LMG 5339]
          Length = 246

 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 66/257 (25%), Positives = 123/257 (47%), Gaps = 14/257 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL       +  GT + F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHQQTYVHGVPQAPLAATGDT-DATGTEVRFWPSHQTFTNVIEFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++         ++ F++ GG++ +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLIDKRD-------GRQDHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y E      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSAMTRTLNAYMEKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL+++P
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLSEYLLEHP 229

Query: 413 IEATKLLEWVIERSEER 429
            +A  ++  +I+ +  R
Sbjct: 230 SDAKIVVGKIIDAARAR 246


>gi|224496204|gb|ACN52483.1| gyrB [Enterobacter sp. LMG 5336]
          Length = 246

 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 69/257 (26%), Positives = 120/257 (46%), Gaps = 14/257 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +     Q +  G+P +PL          GT + F P  + F +   F+   L K  +  +
Sbjct: 1   EGKGERQIYQHGVPEAPLAVTGDTEK-TGTLVRFWPSLETFTNVTEFEYEILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++  E       + F++ GG+K +++   +N++ I   IF   TEK 
Sbjct: 60  FLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL +NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSDYLQENP 229

Query: 413 IEATKLLEWVIERSEER 429
            +A  ++  +I+ +  R
Sbjct: 230 SDAKIVVGKIIDAARAR 246


>gi|158252456|gb|ABW23712.1| DNA gyrase [Pantoea vagans]
 gi|158252460|gb|ABW23714.1| DNA gyrase [Pantoea vagans]
 gi|158252462|gb|ABW23715.1| DNA gyrase [Pantoea vagans]
 gi|158252464|gb|ABW23716.1| DNA gyrase [Pantoea vagans]
 gi|158252466|gb|ABW23717.1| DNA gyrase [Pantoea vagans]
 gi|158252468|gb|ABW23718.1| DNA gyrase [Pantoea vagans]
 gi|158252472|gb|ABW23720.1| DNA gyrase [Pantoea vagans]
 gi|158252478|gb|ABW23723.1| DNA gyrase [Pantoea vagans]
 gi|158252480|gb|ABW23724.1| DNA gyrase [Pantoea vagans]
 gi|158252482|gb|ABW23725.1| DNA gyrase [Pantoea vagans]
 gi|158252486|gb|ABW23727.1| DNA gyrase [Pantoea vagans]
 gi|158252488|gb|ABW23728.1| DNA gyrase [Pantoea vagans]
 gi|158252522|gb|ABW23745.1| DNA gyrase [Pantoea vagans]
          Length = 247

 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 68/258 (26%), Positives = 124/258 (48%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL       +  GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHQQIYVHGVPEAPLAVTGDT-DITGTRVRFWPSYETFTNVRDFEYEILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + F++ GG+K +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLEDKRD-------GKTDHFHYEGGIKAFVEYLNKNKTPIHPTVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++  +I+ +  R 
Sbjct: 230 SDAKIVVGKIIDAARARE 247


>gi|164456633|dbj|BAF97809.1| gyrase B subunit [Enterovibrio norvegicus]
          Length = 259

 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 73/269 (27%), Positives = 132/269 (49%), Gaps = 13/269 (4%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS++L +T+ R   +  Q +  G+P +PL       ++ GTRI F P  + F D   F 
Sbjct: 1   ALSEKLELTIWRHGQVHQQVYVHGVPEAPLGPIGDT-DETGTRIRFWPSGETFTDLL-FH 58

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L K  +  ++L+  V      ++E        + + F + GG++ +++    N++ I
Sbjct: 59  YDILAKRLRELSFLNSGVSIRLVDERE------EDKSDHFTYEGGIRAFVEHLNRNKNPI 112

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
              +F  + E++     TVE ++ W +     I  + N I   +GGTH +G R ALTR +
Sbjct: 113 HPSVFHFEHERED--GVTVEVSMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTL 170

Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             Y E      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE+A+
Sbjct: 171 NSYMEKEGYSKKANAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAM 230

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEER 429
            +    +L+++P +A  +   +I+ +  R
Sbjct: 231 NEKLSEFLIESPQDAKIVCSKIIDAARAR 259


>gi|224496310|gb|ACN52536.1| gyrB [Pantoea agglomerans]
          Length = 246

 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 68/257 (26%), Positives = 125/257 (48%), Gaps = 14/257 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL    +  +  GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHQQVYVHGVPQAPLAVTGET-DITGTRVRFWPSHETFTNVRDFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + F++ GG++ +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLDDKRD-------GKSDHFHYEGGIRGFVEYLNKNKTPIHPTVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y E      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSAMTRTLNAYMEKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEER 429
            +A  ++  +I+ +  R
Sbjct: 230 SDAKIVVGKIIDAARAR 246


>gi|219963030|gb|ACL68103.1| DNA gyrase subunit B [Xenorhabdus vietnamensis]
          Length = 287

 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 85/298 (28%), Positives = 139/298 (46%), Gaps = 15/298 (5%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            +  Q +  G+P SPL          GT + F P    F     F+   L K  +  ++L
Sbjct: 1   KVHEQTYHHGVPQSPLNIVGDT-EHTGTTVRFWPSMDTFKINTEFEYDILAKRLRELSFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V       +  AE       + F++ GG+K +++    N++ I   +F   TEK G 
Sbjct: 60  NSGVSIRLVDKRTNAE-------DIFHYKGGIKAFVEFLSRNKNPIHPNVFYFSTEKDGI 112

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRA 354
               VE ++ W +     I  + N I   +GGTH  G R A+TR +  Y +      K  
Sbjct: 113 ---GVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSK 169

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +
Sbjct: 170 VSATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPND 229

Query: 415 ATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           A  ++  +I+        R+ +    RK A+    LPGKLADC +     +EL++VEG
Sbjct: 230 AKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|192758066|gb|ACF04960.1| gyrase [Enterorhabdus mucosicola]
          Length = 237

 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 93/231 (40%), Positives = 132/231 (57%), Gaps = 5/231 (2%)

Query: 299 RGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
            GTVE A+ W          ++ N I T EGGTH  G + A+TR I  YA       ++ 
Sbjct: 6   DGTVEVALQWSSSYSTNSVMAFANNINTHEGGTHMDGFKQAITRTINDYARAKGLLKEKD 65

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
            ++  +D       I+SV + +P+F GQTKTKL + + +  V+NA+      YL +NP  
Sbjct: 66  NNLSGEDAREGLAAIISVKLHDPQFEGQTKTKLGNTEIRPLVQNAVTQGLAEYLEENPTP 125

Query: 415 ATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473
           A +++    +  + R   RK RE+  RK  +    +PGKLADC+   A  +E+FIVEGDS
Sbjct: 126 AKRIIGKATQALKAREAARKAREMTRRKNVLDSFSMPGKLADCASKDASQSEIFIVEGDS 185

Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           AGGSAKQAR+R  QA+LPLRGKILNV  AG  +  +++ I  L+ A+G   
Sbjct: 186 AGGSAKQARDRKFQAILPLRGKILNVERAGLHRSLSSETISSLITAIGTNI 236


>gi|219963028|gb|ACL68102.1| DNA gyrase subunit B [Xenorhabdus japonica]
          Length = 287

 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 85/298 (28%), Positives = 138/298 (46%), Gaps = 15/298 (5%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            +  Q +  G+P SPL          GT + F P    F     F+   L K  +  ++L
Sbjct: 1   KVHEQTYHHGVPQSPLNIVGDT-EHTGTTVRFWPSMDTFKINTEFEYDILAKRLRELSFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V       +  AE         F++ GG+K +++    N++ I   +F   TEK G 
Sbjct: 60  NSGVSIRLVDKRTNAEDL-------FHYKGGIKAFVEFLSRNKNPIHPNVFYFSTEKDGI 112

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRA 354
               VE ++ W +     I  + N I   +GGTH  G R A+TR +  Y +      K  
Sbjct: 113 ---GVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSK 169

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +
Sbjct: 170 VSATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPND 229

Query: 415 ATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           A  ++  +I+        R+ +    RK A+    LPGKLADC +     +EL++VEG
Sbjct: 230 AKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|219963082|gb|ACL68129.1| DNA gyrase subunit B [Xenorhabdus innexi]
 gi|219963084|gb|ACL68130.1| DNA gyrase subunit B [Xenorhabdus innexi]
          Length = 287

 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 85/298 (28%), Positives = 140/298 (46%), Gaps = 15/298 (5%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            +  Q +  G+P SPL+       + GT + F P    F     F+   L K  +  ++L
Sbjct: 1   KVHEQTYQHGVPQSPLKIVGDT-EQTGTTVRFWPSMDTFKITTEFEYDILAKRLRELSFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V       +  AE         F++ GG+K +++    N++ I   +F   TEK G 
Sbjct: 60  NSGVSIRLVDKRTSAEDL-------FHYEGGIKAFVEYLSRNKNPIHQNVFYFSTEKDGI 112

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRA 354
               VE ++ W +     I  + N I   +GGTH  G R A+TR +  Y +      K  
Sbjct: 113 ---GVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSK 169

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +
Sbjct: 170 VSATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPND 229

Query: 415 ATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           A  ++  +I+        R+ +    RK A+    LPGKLADC +     +EL++VEG
Sbjct: 230 AKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPAQSELYLVEG 287


>gi|281331926|emb|CAZ39958.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 227

 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 69/237 (29%), Positives = 121/237 (51%), Gaps = 13/237 (5%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS +L + + +    + Q+++ G  L PL++       RGT + F 
Sbjct: 1   SGGLHGVGVSVVNALSQKLVLDIYQGGFHYQQEYADGAALHPLKQIGPSTK-RGTTLRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  K F D   F    L +  +  ++L+  VK     ++          +++F++ GG++
Sbjct: 60  PSVKAFHDNVEFHYDILARRLRELSFLNSGVKIVLVDERGD------GRRDDFHYEGGIR 113

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
           ++++   + ++ +   + +   E  G    TVE A+ W +     +  + N I   +GGT
Sbjct: 114 SFVEHLAQLKTPLHPNVISVTGESNGI---TVEVALQWTDSYQETMYCFTNNIPQKDGGT 170

Query: 330 HESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTK 384
           H +G R ALTR +  Y E     +   I++  DD+    + +LSV + +P F+ QTK
Sbjct: 171 HLAGFRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTK 227


>gi|169248033|gb|ACA51800.1| DNA gyrase subunit B [Aliivibrio logei]
          Length = 303

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 104/296 (35%), Positives = 153/296 (51%), Gaps = 12/296 (4%)

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           +I F P  + F +   F    L K  +  ++L+  V       +E        + + F F
Sbjct: 16  KIRFWPSDQTFTNV-EFVYEILAKRLRELSFLNSGVSIILQDMRE------EDKSDHFMF 68

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG++ ++     N++ +  +IF   +E+K      VE A+ W +     I  Y N I  
Sbjct: 69  EGGIQAFVTHLNRNKTPVHQKIFYFDSERK-EDGIVVEVAMQWNDSYQENIFCYTNNIPQ 127

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GG H SG R ALTR +  + +      K   S   DD       ++SV + +P+F+ Q
Sbjct: 128 RDGGAHLSGFRSALTRTLNSFMDKEGFSKKAKSSASGDDAREGLTAVVSVKVPDPKFSSQ 187

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRK 441
           TK KLVS + +  VE+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK
Sbjct: 188 TKDKLVSSEVKSAVESAMNEKLAEFLAENPGEAKMVCSKIIDAARAREAARKAREMTRRK 247

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497
            A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKIL
Sbjct: 248 GALDIAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKIL 303


>gi|195934652|gb|ACG58685.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. kayaii]
          Length = 287

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 86/298 (28%), Positives = 142/298 (47%), Gaps = 15/298 (5%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            +  Q +  G+P SPL+   +   + GTR+ F P    F +   F    L K  +  ++L
Sbjct: 1   KVHEQTYHLGVPQSPLKVVGET-EQTGTRVRFWPSMDTFRNNTEFQHDILAKRLRELSFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V           E       + F++ GG+K +++   +N++ I   +F   TEK G 
Sbjct: 60  NSGVSIRLIDKHTNIE-------DHFHYEGGIKAFVEFLNKNKTPIHPNVFYFSTEKDGI 112

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRA 354
               VE ++ W +     I  + N I   +GGTH  G R A+TR +  Y +      K  
Sbjct: 113 ---GVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSK 169

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +S   DD     V ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +
Sbjct: 170 VSATGDDAREGLVAVISVKVPDPKFSSQTKNKLVSSEVKTAVETLMNEKLVEYLLENPND 229

Query: 415 ATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           A  ++  +I+        R+ +    RK A+    LPGKLADC +     +EL++VEG
Sbjct: 230 AKTVVSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|219963050|gb|ACL68113.1| DNA gyrase subunit B [Xenorhabdus ehlersii]
          Length = 287

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 85/298 (28%), Positives = 139/298 (46%), Gaps = 15/298 (5%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            +  Q +  G+P SPL+       + GT + F P    F     F+   L K  +  ++L
Sbjct: 1   KVHEQTYCLGVPQSPLKVVGDT-EQTGTTVRFWPSMDTFKINTEFEFDILAKRLRELSFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V       +   E         F++ GG+K +++    N++ I   +F   TEK G 
Sbjct: 60  NSGVAIRLIDKRTNTEDL-------FHYEGGIKAFVEFLSRNKNPIHPNVFYFCTEKDGI 112

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRA 354
               VE ++ W +     I  + N I   +GGTH  G R A+TR +  Y +      K  
Sbjct: 113 ---GVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKTK 169

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +
Sbjct: 170 VSATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTVVETLMNEKLVEYLLENPND 229

Query: 415 ATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           A  ++  +I+        R+ +    RK A+    LPGKLADC Q     +EL++VEG
Sbjct: 230 AKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQQRDPALSELYLVEG 287


>gi|281332008|emb|CAZ39978.1| DNA gyrase subunit B [Stenotrophomonas rhizophila]
          Length = 248

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 75/258 (29%), Positives = 132/258 (51%), Gaps = 13/258 (5%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS +L + + +    + Q+++ G  L PL++       RGT +   
Sbjct: 1   SGGLHGVGVSVVNALSQKLVLDIYQGGFHYQQEYADGAALHPLKQVAASTK-RGTTLXIW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  K F D   F    L +  +  ++L+  VK   + ++          +++F++ GG++
Sbjct: 60  PSLKAFHDNVEFHYDILARRLRELSFLNSGVKIVLADERGD------GRRDDFHYEGGIR 113

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
           ++++   + ++ +   + +   E  G    TV+ A+ W +     +  + N I   +GGT
Sbjct: 114 SFVEHLAQLKTPLHPNVISVTGESNGI---TVDVALQWTDSYQETMYCFTNNIPQKDGGT 170

Query: 330 HESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387
           H +G R ALTR +  Y E     +   I++  DD+    + +LSV + +P F+ QTK KL
Sbjct: 171 HLAGFRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKL 230

Query: 388 VSLDAQRTVENALRDPFD 405
           VS D +  VE+A     +
Sbjct: 231 VSSDVRPAVESAFGQRLE 248


>gi|158252534|gb|ABW23751.1| DNA gyrase [Pantoea vagans]
          Length = 247

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 67/258 (25%), Positives = 123/258 (47%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P + L       +  GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHQQIYVHGVPEASLAVTGDT-DITGTRVRFWPSYETFTNVRDFEYEILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + F++ GG+K +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLEDKRD-------GKTDHFHYEGGIKAFVEYLNKNKTPIHPTVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++  +I+ +  R 
Sbjct: 230 SDAKIVVGKIIDAARARE 247


>gi|219963066|gb|ACL68121.1| DNA gyrase subunit B [Xenorhabdus koppenhoeferi]
          Length = 287

 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 85/298 (28%), Positives = 139/298 (46%), Gaps = 15/298 (5%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            +  Q +  G+P SPL        + GT + F P    F     F+   L K  +  ++L
Sbjct: 1   KVHEQTYHHGVPQSPLNIVGDT-EQTGTTVRFWPSMDTFKINTEFEYDILAKRLRELSFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V       +  AE         F++ GG+K +++    N++ I   +F   TEK G 
Sbjct: 60  NSGVSIRLVDKRTNAEDL-------FHYKGGIKAFVEFLSRNKNPIHPNVFYFSTEKDGI 112

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRA 354
               VE ++ W +     I  + N I   +GGTH  G R A+TR +  Y +      K  
Sbjct: 113 ---GVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSK 169

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +
Sbjct: 170 VSATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPND 229

Query: 415 ATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           A  ++  +I+        R+ +    RK A+    LPGKLADC +     +EL++VEG
Sbjct: 230 AKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|224496196|gb|ACN52479.1| gyrB [Pantoea dispersa]
          Length = 246

 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 68/257 (26%), Positives = 121/257 (47%), Gaps = 14/257 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
              +  Q +  G+P +PL       +  GTR+ F P    F +   F+   L K  +  +
Sbjct: 1   DGKVHQQTYVHGVPQAPLAVTGDT-DATGTRVRFWPSHDTFTNVTDFEYEILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + +++ GG+K +++    N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLEDKRD-------DKNDHYHYEGGIKAFVEYLNRNKNPIHPNVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     V ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLVAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENP 229

Query: 413 IEATKLLEWVIERSEER 429
            +A  ++  +I+ +  R
Sbjct: 230 SDAKIVVGKIIDAARAR 246


>gi|164456691|dbj|BAF97838.1| gyrase B subunit [Vibrio mediterranei]
          Length = 261

 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 77/271 (28%), Positives = 129/271 (47%), Gaps = 13/271 (4%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS ++ +T+ R   I +Q +  G P +PL+      +K GT I F P  + F +   F 
Sbjct: 1   ALSKKVTLTIHRGGQIHTQTYHHGEPEAPLKVIGDT-DKTGTEIRFWPSEETFTN-IEFH 58

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L K  +  ++L+  V       +E        + + F F GG++ +++    N++ I
Sbjct: 59  YDILAKRLRELSFLNSGVSIKLIDKRE------EDKMDHFMFEGGIQAFVEHLNTNKTPI 112

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
             +IF    E+      TVE A+ W +     I  + N I   +GGTH +G R ALTR +
Sbjct: 113 IQKIFHFDNERDD--GITVEVAMQWNDGYQENIYCFTNNIPQRDGGTHLAGFRAALTRTL 170

Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             + +      K   +   DD       I+SV + +P+F+ QTK KLVS + +  VE+A+
Sbjct: 171 NTFMDKEGFSKKAKTATSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESAM 230

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLR 431
            +    +LV+NP EA  +   +I+ +  R  
Sbjct: 231 GEKLSEFLVENPGEAKIVCTKIIDAARARDA 261


>gi|158252584|gb|ABW23776.1| DNA gyrase [Pantoea dispersa]
 gi|158252586|gb|ABW23777.1| DNA gyrase [Pantoea dispersa]
 gi|158252588|gb|ABW23778.1| DNA gyrase [Pantoea dispersa]
 gi|158252616|gb|ABW23792.1| DNA gyrase [Pantoea dispersa]
          Length = 247

 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 68/258 (26%), Positives = 121/258 (46%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
              +  Q +  G+P +PL       +  GTR+ F P    F +   F+   L K  +  +
Sbjct: 1   DGKVHQQTYVHGVPQAPLAVTGDT-DATGTRVRFWPSHDTFTNVTDFEYEILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + +++ GG+K +++    N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLEDKRD-------DKNDHYHYEGGIKAFVEYLNRNKNPIHPNVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     V ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLVAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++  +I+ +  R 
Sbjct: 230 SDAKIVVGKIIDAARARE 247


>gi|195934648|gb|ACG58683.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. kayaii]
          Length = 287

 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 86/298 (28%), Positives = 142/298 (47%), Gaps = 15/298 (5%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            +  Q +  G+P SPL+   +   + GTR+ F P    F +   F    L K  +  ++L
Sbjct: 1   KVHEQTYHLGVPQSPLKVVGET-EQTGTRVRFWPSMDTFSNNTEFQHDILAKRLRELSFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V           E       + F++ GG+K +++   +N++ I   +F   TEK G 
Sbjct: 60  NSGVSIRLIDKHTNIE-------DHFHYEGGIKAFVEFLNKNKTPIHPNVFYFSTEKDGI 112

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRA 354
               VE ++ W +     I  + N I   +GGTH  G R A+TR +  Y +      K  
Sbjct: 113 ---GVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSK 169

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +S   DD     V ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +
Sbjct: 170 VSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPND 229

Query: 415 ATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           A  ++  +I+        R+ +    RK A+    LPGKLADC +     +EL++VEG
Sbjct: 230 AKTVVSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|281331672|emb|CAZ40030.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 249

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 78/259 (30%), Positives = 132/259 (50%), Gaps = 13/259 (5%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS +L V V +  + + Q+FS G  ++PL K E     RGT + F P    
Sbjct: 1   GVGVSVVNALSQKLLVDVFQNGSHYQQEFSNGAAVTPLAKLEATTK-RGTTVRFWPSTVA 59

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F D   F    L +  +  ++L+  VK   + ++          +++F++ GG++++++ 
Sbjct: 60  FHDNVEFHYDILARRLRELSFLNSGVKIVLADERGD------GRRDDFHYEGGIRSFVEH 113

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
             + ++ +   + +   E  G     VE A+ W +     +  + N I   +GGTH +G 
Sbjct: 114 LAQLKTPLHPNVISVTGEHNGI---VVEVALQWTDSYQETMYCFTNNIPQKDGGTHLAGF 170

Query: 335 RVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y E     +   I++  DD+    + +LSV + +P F+ QTK KLVS D 
Sbjct: 171 RGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDV 230

Query: 393 QRTVENALRDPFDHYLVQN 411
           +  VENA     + +L +N
Sbjct: 231 RPAVENAFGARLEEFLQEN 249


>gi|224496316|gb|ACN52539.1| gyrB [Pantoea brenneri]
 gi|224496318|gb|ACN52540.1| gyrB [Pantoea sp. LMG 29001]
          Length = 246

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 67/257 (26%), Positives = 125/257 (48%), Gaps = 14/257 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL    +  +  GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHQQVYVHGVPQAPLSVTGET-DLTGTRVRFWPSHETFTNVRDFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + F++ GG++ +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLEDKRD-------GKSDHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEER 429
            +A  ++  +I+ +  R
Sbjct: 230 GDAKIVVGKIIDAARAR 246


>gi|224496320|gb|ACN52541.1| gyrB [Pantoea sp. EM17cb]
          Length = 246

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 67/257 (26%), Positives = 125/257 (48%), Gaps = 14/257 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL    +  +  GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHQQIYVHGVPQAPLSVTGET-DLTGTRVRFWPSHETFTNVRDFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + F++ GG++ +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLEDKRD-------GKSDHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEER 429
            +A  ++  +I+ +  R
Sbjct: 230 SDAKIVVGKIIDAARAR 246


>gi|224496190|gb|ACN52476.1| gyrB [Pantoea dispersa]
          Length = 246

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 68/257 (26%), Positives = 122/257 (47%), Gaps = 14/257 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
              +  Q + +G+P +PL       +  GTR+ F P    F +   F+   L K  +  +
Sbjct: 1   DGKVHQQTYVQGVPQAPLAVTGDT-DATGTRVRFWPSHDTFTNVTDFEYEILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + +++ GG+K +++    N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLEDKRD-------DKNDHYHYEGGIKAFVEYLNRNKNPIHPNVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     V ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLVAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENP 229

Query: 413 IEATKLLEWVIERSEER 429
            +A  ++  +I+ +  R
Sbjct: 230 SDAKIVVGKIIDAARAR 246


>gi|219963034|gb|ACL68105.1| DNA gyrase subunit B [Xenorhabdus beddingii]
          Length = 287

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 82/298 (27%), Positives = 139/298 (46%), Gaps = 15/298 (5%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            +  Q +  G+P SPL+         GT + F P    F     F+   L K  +  ++L
Sbjct: 1   KVHEQTYRHGVPQSPLKVVGDT-EHTGTTVRFWPSMDTFKINTEFEYDILAKRLRELSFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V      ++  AEK        F++ GG+K +++    N++ I   +F   TEK G 
Sbjct: 60  NSGVSIRLVDNRTNAEK-------HFHYEGGIKAFVEFLSRNKNPIHPNVFYFSTEKDGI 112

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRA 354
               VE ++ W +     I  + N I   +GGTH  G R A+TR +  Y +      K  
Sbjct: 113 ---GVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSK 169

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL+++P +
Sbjct: 170 VSATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKVVEYLLEHPND 229

Query: 415 ATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           A  ++  +I+        R+ +    RK A+    LPGKLADC +     ++L++  G
Sbjct: 230 AKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSQLYLGGG 287


>gi|262527746|gb|ACY69090.1| DNA gyrase [Mycobacterium tuberculosis]
          Length = 153

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 70/153 (45%), Positives = 98/153 (64%), Gaps = 1/153 (0%)

Query: 422 VIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480
            +  ++ R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGGSAK 
Sbjct: 1   AVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRFTDPRKSELYVVEGDSAGGSAKS 60

Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540
            R+   QA+LPLRGKI+NV  A  +++  N ++  ++ ALG     ++    LRY K+++
Sbjct: 61  GRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRYHKIVL 120

Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573
           M DADVDG HI++LLLT  ++ M  LIE  H+F
Sbjct: 121 MADADVDGQHISTLLLTLLFRFMRPLIENGHVF 153


>gi|223674730|gb|ACN13061.1| DNA gyrase subunit B [Pseudomonas sp. 2103]
 gi|223674736|gb|ACN13064.1| DNA gyrase subunit B [Pseudomonas sp. 2110]
 gi|223674740|gb|ACN13066.1| DNA gyrase subunit B [Pseudomonas sp. 2150]
          Length = 221

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 111/231 (48%), Gaps = 15/231 (6%)

Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199
           GGKFD+++Y++SGGLHGVG+SVVNALS+EL +TV R   I+ Q +  G+P +P+      
Sbjct: 1   GGKFDDNSYKVSGGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGD- 59

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
               GT+I F+P    F +   F    L K  +  ++L+  V      ++   E      
Sbjct: 60  SETTGTQIHFKPSADTFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE------ 112

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
            E F + GGL+ +++    N++ ++         + G     VE A+ W +     +  +
Sbjct: 113 -ELFKYEGGLRAFVEYLNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCF 168

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
            N I   +GGTH  G R ALTR +  Y E      K  ++   DD      
Sbjct: 169 TNNIPQRDGGTHLVGFRSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLT 219


>gi|33087709|gb|AAP92985.1| DNA gyrase subunit B [Yersinia frederiksenii ATCC 33641]
          Length = 184

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 58/195 (29%), Positives = 98/195 (50%), Gaps = 12/195 (6%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS++L + + R+  +  Q +  G+P +PL+   +  ++ GT + F P
Sbjct: 1   GGLHGVGVSVVNALSEKLELVIRREGKVHEQTYRMGVPQAPLKVVGET-DQTGTTVRFWP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V       +   E       + F++ GG+K 
Sbjct: 60  SFQTFTNNIEFQYEILAKRLRELSFLNSGVSIKLRDKRNDKE-------DHFHYEGGIKA 112

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++   +N++ I  ++F   T K       VE A+ W +     I  + N I   +GGTH
Sbjct: 113 FVEYLNKNKNPIHPKVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTH 169

Query: 331 ESGLRVALTRGIKKY 345
             G R A+TR +  Y
Sbjct: 170 LVGFRTAMTRTLNSY 184


>gi|219963052|gb|ACL68114.1| DNA gyrase subunit B [Xenorhabdus griffiniae]
          Length = 287

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 84/298 (28%), Positives = 138/298 (46%), Gaps = 15/298 (5%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            +  Q +  G+P SPL+         GT + F P    F     F+   L K  +  ++L
Sbjct: 1   KVHEQTYCLGVPQSPLKVVGDT-ELTGTTVRFWPSMDTFKINTEFEFEILAKRLRELSFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V       +   E         F++ GG+K +++    N++ I   +F   TEK G 
Sbjct: 60  NSGVAIRLVDKRTNTEDL-------FHYEGGIKAFVEFLSRNKNPIHPNVFYFCTEKDGI 112

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRA 354
               VE ++ W +     I  + N I   +GGTH  G R A+TR +  Y +      K  
Sbjct: 113 ---GVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSK 169

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +
Sbjct: 170 VSATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTVVETLMNEKLVEYLLENPND 229

Query: 415 ATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           A  ++  +I+        R+ +    RK A+    LPGKLADC +     +EL++VEG
Sbjct: 230 AKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|158252646|gb|ABW23807.1| DNA gyrase [Pantoea conspicua]
          Length = 247

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 67/258 (25%), Positives = 125/258 (48%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL    +  +  GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHQQIYVHGVPQAPLSVTGET-DLTGTRVRFWPSHETFTNVRDFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + F++ GG++ +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLEDKRD-------GKSDHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++  +I+ +  R 
Sbjct: 230 SDAKIVVGKIIDAARARE 247


>gi|158252642|gb|ABW23805.1| DNA gyrase [Pantoea brenneri]
 gi|158252644|gb|ABW23806.1| DNA gyrase [Pantoea brenneri]
 gi|158252648|gb|ABW23808.1| DNA gyrase [Pantoea brenneri]
          Length = 247

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 67/258 (25%), Positives = 125/258 (48%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL    +  +  GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHQQVYVHGVPQAPLSVTGET-DLTGTRVRFWPSHETFTNVRDFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + F++ GG++ +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLEDKRD-------GKSDHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++  +I+ +  R 
Sbjct: 230 GDAKIVVGKIIDAARARE 247


>gi|217030903|gb|ACJ74052.1| DNA gyrase [Pectobacterium cypripedii]
 gi|217030907|gb|ACJ74054.1| DNA gyrase [Pectobacterium cypripedii]
 gi|217030909|gb|ACJ74055.1| DNA gyrase [Pectobacterium cypripedii]
          Length = 247

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 67/258 (25%), Positives = 121/258 (46%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
              +  Q +  G+P +PL          GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   DGKVHQQTYIHGVPQAPLAVVGDT-EATGTRVRFWPSHETFTNVTEFEYEILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + +++ GG+K +++    N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLEDKRD-------DKNDHYHYEGGIKAFVEYLNRNKNPIHPNVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++  +I+ +  R 
Sbjct: 230 SDAKIVVGKIIDAARARE 247


>gi|281332006|emb|CAZ39977.1| DNA gyrase subunit B [Stenotrophomonas acidaminiphila]
          Length = 235

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 74/245 (30%), Positives = 121/245 (49%), Gaps = 13/245 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS++L + V        Q+FS G   +PL++       RGT + F P
Sbjct: 1   GGLHGVGVSVVNALSEKLLLDVYXGGFHXQQEFSNGAAXAPLKQLGTTSK-RGTTVRFWP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
               F     F    L +  +  ++L+  VK   + ++          +++F++ GG+K+
Sbjct: 60  STVAFHGNVEFHYEILARRLRELSFLNSGVKVILADERG------EGRRDDFHYEGGIKS 113

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++   + ++ +   +     E  G    TVE A+ W +     +  + N I   +GGTH
Sbjct: 114 FVEHLAQLKTPLHPNVIAVSGEHNGI---TVEVALQWTDSYQETMYCFTNNIPQKDGGTH 170

Query: 331 ESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  Y E     +   I    DD+    + +LSV + +P F+ QTK KLV
Sbjct: 171 LAGFRGALTRVLNNYIEQNGIAKQAKISLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLV 230

Query: 389 SLDAQ 393
           S D +
Sbjct: 231 SSDVR 235


>gi|224496322|gb|ACN52542.1| gyrB [Pantoea sp. EM486]
 gi|224496324|gb|ACN52543.1| gyrB [Pantoea sp. EM595]
 gi|224496328|gb|ACN52545.1| gyrB [Pantoea sp. P8SAA]
          Length = 246

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 67/257 (26%), Positives = 121/257 (47%), Gaps = 14/257 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
              +  Q +  G+P +PL    +  +  GTR+ F      F +   F+   L K  +  +
Sbjct: 1   DGKVHHQVYVHGVPQAPLAVTGET-DTTGTRVRFWASHNTFTNVLDFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + F++ GG+K +++   +N++ I    F   TEK 
Sbjct: 60  FLNSGVSIRLEDKRD-------GKSDHFHYEGGIKAFVEYLNKNKTPIHPNAFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEER 429
            +A  ++  +I+ +  R
Sbjct: 230 GDAKIVVGKIIDAARAR 246


>gi|224496216|gb|ACN52489.1| gyrB [Enterobacter sp. LMG 5337]
          Length = 246

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 68/257 (26%), Positives = 121/257 (47%), Gaps = 14/257 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
            N +  Q +  G+P +PL          GT + F P  + F +   F+   L K  +  +
Sbjct: 1   DNKVHRQIYEHGVPQAPLAVTGDTEK-TGTMVRFWPSYETFTNVTEFEYEILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++  E       + F++ GG+K +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLKDKRDGKE-------DHFHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GG H +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGXHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEER 429
            +A  ++  +I+ +  R
Sbjct: 230 SDAKIVVGKIIDAAXAR 246


>gi|158252596|gb|ABW23782.1| DNA gyrase [Pantoea agglomerans]
          Length = 247

 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 67/258 (25%), Positives = 125/258 (48%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL    +  +  GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHQQIYVHGVPQAPLAVTGET-DITGTRVRFWPSHETFTNVRDFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + F++ GG++ +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLDDKRD-------GKSDHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y E      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSAMTRTLNAYMEKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++  +++ +  R 
Sbjct: 230 SDAKIVVGKIMDAARARE 247


>gi|281429812|gb|ADA70042.1| DNA gyrase subunit B [Erwinia persicina]
          Length = 246

 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 67/257 (26%), Positives = 124/257 (48%), Gaps = 14/257 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL    +  +  GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHQQTYVHGVPQAPLSVSGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + +++ GG+K +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIKLEDKRD-------GKSDHYHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH  G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEER 429
            +A  ++  +I+ +  R
Sbjct: 230 TDAKIVVGKIIDAARAR 246


>gi|224496314|gb|ACN52538.1| gyrB [Pantoea agglomerans]
          Length = 246

 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 67/257 (26%), Positives = 124/257 (48%), Gaps = 14/257 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL    +  +  GTR+ F P    F +   F+   L K  +  +
Sbjct: 1   EGKVHQQVYVHGVPQAPLAVTGET-DITGTRVRFWPSHDTFTNVRDFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + F++ GG++ +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLEDKRD-------GKNDHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEER 429
            +A  ++  +I+ +  R
Sbjct: 230 SDAKIVVGKIIDAARAR 246


>gi|158252656|gb|ABW23812.1| DNA gyrase [Erwinia toletana]
          Length = 247

 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 67/258 (25%), Positives = 125/258 (48%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL    +  +  GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHQQVYVHGVPQAPLAVSGET-DLTGTRVRFWPSHETFTNVIEFEYEILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + +++ GG+K +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLEDKRD-------GKSDHYHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETQMNERLVEYLLENP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++  +I+ +  R 
Sbjct: 230 GDAKIVVGKIIDAARARE 247


>gi|315936460|gb|ADU55858.1| DNA gyrase [Erwinia persicina]
 gi|315936462|gb|ADU55859.1| DNA gyrase [Erwinia persicina]
          Length = 247

 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 67/258 (25%), Positives = 124/258 (48%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL    +  +  GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHQQTYVHGVPQAPLSVSGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + +++ GG+K +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIKLEDKRD-------GKSDHYHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH  G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++  +I+ +  R 
Sbjct: 230 TDAKIVVGKIIDAARARE 247


>gi|224496326|gb|ACN52544.1| gyrB [Pantoea sp. P10QLC]
          Length = 246

 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 67/257 (26%), Positives = 121/257 (47%), Gaps = 14/257 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
              +  Q +  G+P +PL    +  +  GTR+ F      F +   F+   L K  +  +
Sbjct: 1   DGKVHHQVYVHGVPQAPLAVTGET-DTTGTRVRFWASHNTFTNVLDFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + F++ GG+K +++   +N++ I    F   TEK 
Sbjct: 60  FLNSGVSIRLEDKRD-------GKSDHFHYEGGIKAFVEYLNKNKTPIHPNAFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQEIIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEER 429
            +A  ++  +I+ +  R
Sbjct: 230 GDAKIVVGKIIDAARAR 246


>gi|124039609|dbj|BAF45400.1| DNA gyrase beta subunit [uncultured bacterium]
          Length = 314

 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 110/326 (33%), Positives = 173/326 (53%), Gaps = 16/326 (4%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NAL++   V V R   I+ Q + RG P +PLE+   V +  GT   F+ D +IF     +
Sbjct: 1   NALAEWTTVKVRRNGKIYQQSYQRGKPSTPLEEVG-VSDGSGTTTIFKADSQIFSTT-EY 58

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L    +  AYL+  ++     ++   E+        +YF GG+  +++    NR +
Sbjct: 59  DFETLTDRLREIAYLNKGLEVYIYDEQSDQERT-------YYFEGGITGFVRHLNRNREV 111

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRG 341
              +      +   T    +E AI + +   +   ++ N + T +GGTH +G R ALTR 
Sbjct: 112 RHRQPIYITKKSDSTI---LEVAIQYNDGYSDSTLTFANCVNTIDGGTHLTGFRSALTRA 168

Query: 342 IKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
              YA  ++  +    +++ DD+    V I+SV + EP+F GQTK KL +++ +  VE+A
Sbjct: 169 FNDYAHKSKFLKDTDPNLMGDDVREGIVAIVSVKLPEPQFEGQTKGKLGNIEIKSFVESA 228

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    YL + P +  ++LE  I  ++ R   RK R+ + RK+A+    LPGKLADCS+
Sbjct: 229 VTEQLSLYLEERPDDTKRILEKCITAAKAREAARKARDLIIRKSALDTGTLPGKLADCSE 288

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNR 484
             A   ELF+VEGDSAGGSAKQ RNR
Sbjct: 289 RDASLCELFLVEGDSAGGSAKQGRNR 314


>gi|219963070|gb|ACL68123.1| DNA gyrase subunit B [Xenorhabdus szentirmaii]
          Length = 287

 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 86/298 (28%), Positives = 140/298 (46%), Gaps = 15/298 (5%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            +  Q +  G+P SPL        + GT + F P    F     F+   L K  +  ++L
Sbjct: 1   KVHEQTYHHGVPQSPLNIVGDT-EQTGTTVRFWPSMDTFKINTEFEYDILAKRLRELSFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V       +  AE       + F++ GG+K +++    N++ I   IF   TEK G 
Sbjct: 60  NSGVSIQLMDKRTNAE-------DVFHYEGGIKAFVEFLSRNKNPIHPNIFYFSTEKDGI 112

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRA 354
               VE ++ W +     I  + N I   +GGTH  G R A+TR +  Y +      K  
Sbjct: 113 ---GVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSK 169

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +
Sbjct: 170 VSATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLLENPND 229

Query: 415 ATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           A  ++  +I+        R+ +    RK A+    LPGKLADC +     +EL++VEG
Sbjct: 230 AKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|224496246|gb|ACN52504.1| gyrB [Pantoea sp. SC-1]
 gi|224496248|gb|ACN52505.1| gyrB [Pantoea sp. EM13cb]
          Length = 246

 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 68/257 (26%), Positives = 123/257 (47%), Gaps = 14/257 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P SPL       +  GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHQQIYVHGVPESPLTVTGDT-DLTGTRVRFWPSYETFTNVRDFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + F++ GG+K +++   +N++ I   +F    EK 
Sbjct: 60  FLNSGVSIRLEDKRD-------GKTDHFHYEGGIKAFVEYLNKNKTPIHPTVFYFSNEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEER 429
            +A  ++  +I+ +  R
Sbjct: 230 ADAKIVVGKIIDAARAR 246


>gi|224496276|gb|ACN52519.1| gyrB [Pantoea agglomerans]
          Length = 246

 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 68/257 (26%), Positives = 125/257 (48%), Gaps = 14/257 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL    +  +  GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHQQIYVHGVPQAPLAVTGET-DITGTRVRFWPSHETFTNVRDFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + F++ GG++ +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLDDKRD-------GKSDHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y E      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSAMTRTLNAYMEKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEER 429
            +A  ++  +I+ +  R
Sbjct: 230 SDAKIVVGKIIDAAXAR 246


>gi|158252576|gb|ABW23772.1| DNA gyrase [Pantoea anthophila]
          Length = 247

 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 68/258 (26%), Positives = 123/258 (47%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P SPL       +  GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHQQIYVHGVPESPLTVTGDT-DLTGTRVRFWPSYETFTNVRDFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + F++ GG+K +++   +N++ I   +F    EK 
Sbjct: 60  FLNSGVSIRLEDKRD-------GKTDHFHYEGGIKAFVEYLNKNKTPIHPTVFYFSNEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++  +I+ +  R 
Sbjct: 230 ADAKIVVGKIIDAARARE 247


>gi|19909787|dbj|BAB87089.1| DNA gyrase subunit B [Rhodoplanes sp. HMD01017]
          Length = 221

 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 113/230 (49%), Gaps = 12/230 (5%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
             +Y++SGGLHGVG+SVVNALS  L +T+ R     + +F  G  ++PL        +RG
Sbjct: 1   QDSYKVSGGLHGVGVSVVNALSSWLKLTIWRDGKTHAMEFRHGEAVAPLAVIGDSDGRRG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF P  + F     FD A L    +  A+L+  V+   +  +   EK      EE +
Sbjct: 61  TEVTFLPSTETF-TMTEFDWATLEHRLRELAFLNSGVRIVLTDKRHAVEKR-----EEMH 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG++ +++    N+  + ++    K+ + G     VE A+ W +     +  + N I 
Sbjct: 115 YEGGVEAFVRYVDRNKKPLIADPIVIKSGRDGI---EVECALWWNDGYHEAVLCFTNNIP 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371
             +GGTH +G R ALTR +  YAE      K  +++  DD       +LS
Sbjct: 172 QRDGGTHLAGFRGALTRQVTSYAESGGVAKKEKVALTGDDCREGLTAVLS 221


>gi|164456683|dbj|BAF97834.1| gyrase B subunit [Vibrio ichthyoenteri]
          Length = 259

 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 72/268 (26%), Positives = 129/268 (48%), Gaps = 12/268 (4%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS+++ +T+ R   + +Q +  G P +PL          GT+I F P  + F +   F 
Sbjct: 1   ALSEKVELTIWRGGHVHTQTYCHGEPQAPLAVIADTEK-TGTKIRFWPSDQTFTNVLEFH 59

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L K  +  ++L+  V      ++E        + + F F GG++ +++    N++ I
Sbjct: 60  YDILAKRLRELSFLNSGVSIKLIDERE------EDKSDHFEFEGGIQAFVEHLNTNKTPI 113

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
             +IF    E++     TVE A+ W +     I  + N I   +GGTH +G R ALTR +
Sbjct: 114 IDKIFHFDFERED--GITVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTL 171

Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE+A+
Sbjct: 172 NSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAM 231

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEE 428
            +    +L++NP EA  +   +I+ +  
Sbjct: 232 GEKLAEFLIENPTEAKMVCSKIIDAARA 259


>gi|217030905|gb|ACJ74053.1| DNA gyrase [Pectobacterium cypripedii]
          Length = 247

 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 67/258 (25%), Positives = 121/258 (46%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
              +  Q +  G+P +PL          GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   DGKVHQQTYIHGVPQAPLAVVGDT-EATGTRVRFWPSHETFTNVTEFEYEILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + +++ GG+K +++    N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLEDKRD-------DKNDHYHYEGGIKAFVEYLNRNKNPIHPNVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQXMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++  +I+ +  R 
Sbjct: 230 SDAKIVVGKIIDAARARE 247


>gi|330955405|gb|EGH55665.1| DNA gyrase subunit B [Pseudomonas syringae Cit 7]
          Length = 75

 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669
            +  I R+KGLGEM   QL ET MD + R +L+V I   +          N LMG   + 
Sbjct: 3   KRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIG----ADQIFNTLMGDAVEP 58

Query: 670 RFKFIQERASFIDDVG 685
           R  FI+  A  + ++ 
Sbjct: 59  RRDFIESNALAVSNLD 74


>gi|291196151|emb|CBG14442.1| DNA gyrase subunit B [Pseudomonas cremoricolorata]
          Length = 267

 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 78/269 (28%), Positives = 133/269 (49%), Gaps = 14/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS++L +TV R   I+ Q +  G+P  P+    +     GT I F+P  + F +
Sbjct: 1   VSVVNALSEKLILTVRRSGKIWEQTYVHGVPQEPMAIVGE-SETTGTHIHFKPSAETFKN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRIRELSFLNSGVGILLKDERSGKE-------EFFKYEGGLRAFVEYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++S++F    +++      VE A+ W +     +  + N I   +GGTH  G R +
Sbjct: 112 NKTPVNSQVFHFSVQRED--GVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSS 169

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  +S   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 170 LTRSLNNYIEQEGLAKKNKVSTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 229

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 230 VEQEMNKYFSDFLLENPNEAKAVVGKMID 258


>gi|312618521|gb|ADR00378.1| DNA gyrase [Gibbsiella quercinecans]
 gi|312618537|gb|ADR00386.1| DNA gyrase [Gibbsiella quercinecans]
 gi|312618553|gb|ADR00394.1| DNA gyrase [Gibbsiella quercinecans]
 gi|312618557|gb|ADR00396.1| DNA gyrase [Gibbsiella quercinecans]
          Length = 247

 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 66/258 (25%), Positives = 121/258 (46%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +S G P   L+   +  ++ GT + F P  + F ++  F    L K  +  +
Sbjct: 1   EGKVHEQTYSHGEPQGALKVVGET-DQTGTMVRFWPSYQTFTNQTEFQYEILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       +   E       + F++ GG+K +++   +N++ I   +F   T K 
Sbjct: 60  FLNSGVSIRLKDKRTDKE-------DHFHYEGGIKAFVEYLNKNKTPIHPTVFYFSTVKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
                 VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 DI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++  +I+ +  R 
Sbjct: 230 SDAKIVVGKIIDAARARE 247


>gi|209408302|emb|CAP19836.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 286

 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 85/272 (31%), Positives = 132/272 (48%), Gaps = 15/272 (5%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS+EL +T+ R+  ++ Q +  G+P +PL     V    GT I FRP P+ 
Sbjct: 1   GVGVSVVNALSEELLLTIRREGKVWEQLYRHGVPQAPLTAVG-VTEGSGTEIHFRPSPET 59

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   F    L K  +  ++L+  V      ++   E       E F + GGL  ++  
Sbjct: 60  FQNIH-FSWDILAKRLRELSFLNSGVGIVLRDERSAKE-------ELFKYEGGLSAFVAY 111

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              N++ ++           G     VE A+ W +     I  + N I   +GGTH +G 
Sbjct: 112 LNTNKTPVNQVFHFNVQRDDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGF 168

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y E      K  IS   DD       I+SV + +P+F+ QTK KLVS + 
Sbjct: 169 RSALTRNLNNYIEQEGLAKKHKISTPGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEV 228

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
           +  VE  +   F  +L+++P EA  ++  +I+
Sbjct: 229 KTAVEQEMGKYFGDFLLEHPNEAKAVVGKMID 260


>gi|158252470|gb|ABW23719.1| DNA gyrase [Pantoea vagans]
          Length = 247

 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 68/258 (26%), Positives = 125/258 (48%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL       +  GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHQQIYVHGVPEAPLAVTGDT-DITGTRVRFWPSYETFTNVRDFEYEILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + F++ GG+K +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLEDKRD-------GKTDHFHYEGGIKAFVEYLNKNKTPIHPTVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE+ + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEHQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++  +I+ +  R 
Sbjct: 230 SDAKIVVGKIIDAARARE 247


>gi|281332022|emb|CAZ39985.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 232

 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 72/241 (29%), Positives = 124/241 (51%), Gaps = 13/241 (5%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS +L + + +    + Q+++ G  L PL++       RGT + F P
Sbjct: 1   GGLHGVGVSVVNALSQKLVLDIYQGGFHYQQEYADGAALHPLKQVGPSTK-RGTTLRFWP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             K F D   F    L +  +  ++L+  VK     ++          +++F++ GG+++
Sbjct: 60  SVKAFHDNVEFHYDILARRLRELSFLNTGVKIVLVDERGD------GRRDDFHYEGGIRS 113

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++   + ++ +   + +   E  G    TVE A+ W +     +  + N I   +GGTH
Sbjct: 114 FVEHLAQLKTPLHPNVISVTGESNGI---TVEVALQWTDSYQETMYCFTNNIPQKDGGTH 170

Query: 331 ESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388
            +G R ALTR +  Y E     +   I++  DD+    + +LSV + +P F+ QTK KLV
Sbjct: 171 LAGFRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLV 230

Query: 389 S 389
           S
Sbjct: 231 S 231


>gi|158252558|gb|ABW23763.1| DNA gyrase [Pantoea terrea]
          Length = 247

 Score =  126 bits (317), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 63/258 (24%), Positives = 121/258 (46%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
              +  Q +  G+P +PL    +     GT + F    + F +   F+   L K  +  +
Sbjct: 1   DGKVHQQIYQHGVPTAPLTVIGET-EVTGTAVRFWASHQTFTNVTDFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       +         + + +++ GG++ +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLIDKR-------TDKSDHYHYEGGIRAFVEYLNKNKTPIHPNVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R ++TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDSFQENIYCFTNNIPQRDGGTHLAGFRASMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE+ + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESQMNELLSEYLLENP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++  +I+ +  R 
Sbjct: 230 SDAKIVVGKIIDAARARE 247


>gi|224496198|gb|ACN52480.1| gyrB [Enterobacter sp. EM2cb]
          Length = 246

 Score =  126 bits (317), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 69/255 (27%), Positives = 120/255 (47%), Gaps = 14/255 (5%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
               Q +  G+P +PL          GT + F P  + F +   F+   L K  +  ++L
Sbjct: 3   KFTVQIYQHGVPEAPLAVTGDTEK-TGTMVRFWPSLETFTNVTEFEYDILAKRLRELSFL 61

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V       ++  E       + F++ GG+K +++   +N++ I   IF   TEK G 
Sbjct: 62  NSGVSIRLRDKRDNKE-------DHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI 114

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K  
Sbjct: 115 ---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAK 171

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +
Sbjct: 172 VSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSD 231

Query: 415 ATKLLEWVIERSEER 429
           A  ++  +I+ +  R
Sbjct: 232 AKIVVGKIIDAARAR 246


>gi|261404109|ref|YP_003240350.1| ArsR family transcriptional regulator [Paenibacillus sp. Y412MC10]
 gi|261280572|gb|ACX62543.1| transcriptional regulator, ArsR family [Paenibacillus sp. Y412MC10]
          Length = 372

 Score =  126 bits (317), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 61/187 (32%), Positives = 95/187 (50%), Gaps = 9/187 (4%)

Query: 63  GMYIG-GTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENH 121
           GMY G       +H L   V++N++ E  +GY + I + L  +G +TV DNGRGIPV+  
Sbjct: 191 GMYFGPSHGFD-IHQLLWAVVENSILEHTSGYGDQIGIFLHEDGSVTVTDNGRGIPVQAL 249

Query: 122 PKFPNKSTLEIILTTLHAGGKFDNST-YEISGGLHGVGISVVNALSDELHVTVARQNTIF 180
           P   +   ++ ILT +H   +F+NS  + + G   G+ I+VVNALS +L V + R   I+
Sbjct: 250 P-NSDVPVVQSILTDVH---RFNNSAHFLVPGAEKGISIAVVNALSKQLSVEIRRDGNIY 305

Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240
            Q++  GIP + L      +   GT +TF+P+ ++F     FD   L       A     
Sbjct: 306 RQEYRHGIPQTGLLTVGLTQE-TGTSVTFKPETELFSSAFEFDR-ILEHKDAIAADYPAL 363

Query: 241 VKTCWSC 247
             T  + 
Sbjct: 364 ALTIRNT 370


>gi|310781227|gb|ADP24089.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 308

 Score =  126 bits (317), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 104/320 (32%), Positives = 162/320 (50%), Gaps = 16/320 (5%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS++L V V +   I+ Q + RG+P + LE   +      T ITF+PD +IF +   F
Sbjct: 1   NALSEKLEVIVKQHRKIYRQIYERGVPKTDLEVIGETEETG-TTITFKPDKEIFEETV-F 58

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D   L +  +  A+L+  +      +++  E       E F + GG+ ++++    N+ +
Sbjct: 59  DYDVLAQRLRELAFLNKGINIKLIDERDGKE-------EVFNYEGGIISFVKYLNRNKEV 111

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           +  E    + +        VE  + +       I S+ N I T EGGTH  G + ALT+ 
Sbjct: 112 LHDEPIYMEAK---NTEYEVEVCMQYNNSYNENIFSFANNIDTREGGTHLVGFKAALTKV 168

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           I  YA           ++  +D+      I+SV ++ P+F GQTKTKL + + +  VEN 
Sbjct: 169 INDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFEGQTKTKLGNSEMRSIVENV 228

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458
           + +    +L +NP  A  ++E   + +  R   RK RE   RK+A+    LPGKLADCS+
Sbjct: 229 VTEKLTAFLEENPSVAKIIVEKATQAARAREAARKARELTRRKSALENTTLPGKLADCSE 288

Query: 459 NIAHGTELFIVEGDSAGGSA 478
                 ELF+VEGDSAGGSA
Sbjct: 289 KDPSKCELFLVEGDSAGGSA 308


>gi|158252636|gb|ABW23802.1| DNA gyrase [Pantoea eucrina]
 gi|158252638|gb|ABW23803.1| DNA gyrase [Pantoea eucrina]
 gi|158252640|gb|ABW23804.1| DNA gyrase [Pantoea eucrina]
 gi|158252650|gb|ABW23809.1| DNA gyrase [Pantoea eucrina]
 gi|158252654|gb|ABW23811.1| DNA gyrase [Pantoea eucrina]
          Length = 247

 Score =  126 bits (317), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 66/258 (25%), Positives = 121/258 (46%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
              +  Q +  G+P +PL          GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   DGKVHQQTYVHGVPQAPLAVTGDT-ETTGTRVRFWPSHETFTNVTDFEYEILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + +++ GG++ +++    N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLQDKRD-------DKSDHYHYEGGIRAFVEYLNRNKNPIHPNVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++  +I+ +  R 
Sbjct: 230 ADAKIVVGKIIDAARARE 247


>gi|146431142|gb|ABQ40554.1| DNA gyrase B subunit [Vibrio harveyi]
          Length = 222

 Score =  126 bits (317), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 116/232 (50%), Gaps = 13/232 (5%)

Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205
           ++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       ++ GT
Sbjct: 1   NSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGT 59

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           +I F P  + F +   F    L K  +  ++L+  V      ++E        + + F F
Sbjct: 60  QIRFWPSAETFSN-TEFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KSDHFMF 112

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG++ +++    N++ I  +IF    E++     +VE A+ W +     I  + N I  
Sbjct: 113 EGGIQAFVEHLNTNKTPIIEKIFHFDFERED--GISVEVAMQWNDGFQENIYCFTNNIPQ 170

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
            +GGTH +G R ALTR +  + +      K   +   DD       ++SV +
Sbjct: 171 RDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKV 222


>gi|33087769|gb|AAP93015.1| DNA gyrase subunit B [Yersinia rohdei]
          Length = 187

 Score =  126 bits (317), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 58/197 (29%), Positives = 99/197 (50%), Gaps = 12/197 (6%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS++L + + R+  +  Q +  G+P +PL+   +  ++ GT + F P
Sbjct: 1   GGLHGVGVSVVNALSEKLELVIRREGKVHEQTYRMGVPQAPLKVVGET-DQTGTTVRFWP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V       +   E       + F++ GG+K 
Sbjct: 60  SFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLRDKRNDKE-------DHFHYEGGIKA 112

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++   +N++ I  ++F   T K       VE A+ W +     I  + N I   +GGTH
Sbjct: 113 FVEYLNKNKNPIHPKVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTH 169

Query: 331 ESGLRVALTRGIKKYAE 347
             G R A+TR +  Y +
Sbjct: 170 LVGFRTAMTRTLNSYMD 186


>gi|195934650|gb|ACG58684.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. kayaii]
          Length = 287

 Score =  126 bits (317), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 85/298 (28%), Positives = 141/298 (47%), Gaps = 15/298 (5%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            +  Q +  G+P SPL+   +   + GTR+ F P    F +   F    L K  +  ++L
Sbjct: 1   KVHEQTYHLGVPQSPLKVVGET-EQTGTRVRFWPSMDTFRNNTEFQHDILAKRLRELSFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V           E       + F++ GG+K +++   +N++ I   +F   TEK G 
Sbjct: 60  NSGVSIRLIDKHTNIE-------DHFHYEGGIKAFVEFLNKNKTPIHPNVFYFSTEKDGI 112

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRA 354
               VE ++ W +     I  + N I   +GGTH  G R A+TR +  Y +      K  
Sbjct: 113 ---GVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKEGYNKKSK 169

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +S   DD     V ++SV + +P+F+ QTK KLV  + +  VE  + +    YL++NP +
Sbjct: 170 VSATGDDAREGLVAVISVKVPDPKFSSQTKNKLVPSEVKTAVETLMNEKLVEYLLENPND 229

Query: 415 ATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           A  ++  +I+        R+ +    RK A+    LPGKLADC +     +EL++VEG
Sbjct: 230 AKTVVSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|158252458|gb|ABW23713.1| DNA gyrase [Erwinia sp. BCC003]
          Length = 247

 Score =  126 bits (317), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 67/258 (25%), Positives = 125/258 (48%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL    +  +  GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHQQIYVHGVPQAPLGVTGET-DVTGTRVRFWPSLETFTNVTEFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + +++ GG+K +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLEDKRD-------GKNDHYHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++  +I+ +  R 
Sbjct: 230 NDAKIVVGKIIDAARARE 247


>gi|223674622|gb|ACN13007.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
          Length = 217

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 109/229 (47%), Gaps = 15/229 (6%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SD 59

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             GT+I F+P    F +   F    L K  +  ++L+  V      ++   E       E
Sbjct: 60  TTGTQIHFKPSADTFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------E 111

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F + GGL+ +++    N++ ++           G     VE A+ W +     +  + N
Sbjct: 112 LFKYEGGLRAFVEYLNTNKTPVNQVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTN 168

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
            I   +GGTH  G R ALTR +  Y E      K  ++   DD      
Sbjct: 169 NIPQRDGGTHLVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLT 217


>gi|224496192|gb|ACN52477.1| gyrB [Pantoea dispersa]
          Length = 246

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 68/257 (26%), Positives = 121/257 (47%), Gaps = 14/257 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
              +  Q +  G+P +PL       +  GTR+ F P    F +   F+   L K  +  +
Sbjct: 1   DGKVHQQTYVHGVPQAPLAVTGDT-DATGTRVRFWPSHDTFTNVTDFEYEILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + +++ GG+K +++    N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLEDKRD-------DKNDHYHYEGGIKAFVEYLNRNKNPIHPNVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     V ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLVAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENP 229

Query: 413 IEATKLLEWVIERSEER 429
            +A  ++  +I+ +  R
Sbjct: 230 SDAKIVVGKIIDAAHAR 246


>gi|146189400|emb|CAL91168.1| DNA gyrase subunit beta [Rhizobium tropici]
          Length = 224

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 118/233 (50%), Gaps = 12/233 (5%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS  L + + RQ  I    F+ G+  +PL++     ++ GT ++F 
Sbjct: 1   SGGLHGVGVSVVNALSVWLKLKIRRQGKIHEMSFTHGVADAPLKETGDAGDETGTEVSFM 60

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F     FD + L    +  A+L+  V+   +  +    K     +EE  + GGL+
Sbjct: 61  PSSETF-TMIEFDYSTLEHRLRELAFLNSGVRILLTDKRHSDVK-----QEELLYDGGLE 114

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGT 329
            ++      +  +  +  + ++EK G    TVE A+ W +   E    + N I   +GGT
Sbjct: 115 AFVSYLDRAKKPLVQKPVSIRSEKDGI---TVEVAMWWNDSYHENVLCFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
           H +G R ALTR I  YA+ +    K  +++  DD       +LSV + +P+F+
Sbjct: 172 HMAGFRAALTRQITSYADSSGITKKEKVTLTGDDCREGLTAVLSVKVPDPKFS 224


>gi|224496330|gb|ACN52546.1| gyrB [Pantoea sp. ATCC 27991]
 gi|224496332|gb|ACN52547.1| gyrB [Pantoea sp. ATCC 27992]
 gi|224496334|gb|ACN52548.1| gyrB [Pantoea sp. LMG 5341]
          Length = 246

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 67/257 (26%), Positives = 125/257 (48%), Gaps = 14/257 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL    +  +  GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHQQIYVHGVPQAPLSVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + +++ GG+K +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIKLEDKRD-------GKNDHYHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENP 229

Query: 413 IEATKLLEWVIERSEER 429
            +A  ++  +I+ +  R
Sbjct: 230 GDAKIVVGKIIDAARAR 246


>gi|125487112|gb|ABN42498.1| gyrase B [Xylella fastidiosa]
 gi|125487114|gb|ABN42499.1| gyrase B [Xylella fastidiosa]
 gi|125487116|gb|ABN42500.1| gyrase B [Xylella fastidiosa]
          Length = 274

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 99/276 (35%), Positives = 154/276 (55%), Gaps = 7/276 (2%)

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
           ++ G   +++F++ GG++++++   + ++ +   + +   E  G     V+ A+ W +  
Sbjct: 1   DERGEGRRDDFHYEGGIRSFVEHLAQLKTPLHPNVISVTGEHNGI---VVDVALQWTDAY 57

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGI 369
              +  + N I   +GGTH +G R ALTR +  Y E     R   I    DD+    + +
Sbjct: 58  QETMYCFTNNIPQKDGGTHLAGFRAALTRTLGNYIEQNGVARQAKITFSGDDMREGMIAV 117

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           LSV + EP F+ QTK KLVS D +  VE       + +L +NP EA  +   +++ +  R
Sbjct: 118 LSVKVPEPSFSSQTKEKLVSSDVKPAVEATFGLRLEEFLQENPNEARAIAGKIVDAARAR 177

Query: 430 LRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
              RK R++ R+   +    LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR NQA
Sbjct: 178 EAARKARDLTRRKGVLDIAGLPGKLADCQEKDPAMSELFIVEGDSAGGSAKQGRNRKNQA 237

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524
           VLPLRGKILNV  A  +++ ++ ++  L+ ALG   
Sbjct: 238 VLPLRGKILNVERARFDRMLSSAEVGTLITALGTGI 273


>gi|158252544|gb|ABW23756.1| DNA gyrase [Pantoea terrea]
 gi|158252568|gb|ABW23768.1| DNA gyrase [Pantoea terrea]
          Length = 247

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 63/258 (24%), Positives = 121/258 (46%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
              +  Q +  G+P +PL    +     GT + F    + F +   F+   L K  +  +
Sbjct: 1   DGKVHQQIYQHGVPTAPLTVIGET-EVTGTAVRFWASHQTFTNVTDFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       +         + + +++ GG++ +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLIDKR-------TDKSDHYHYEGGIRAFVEYLNKNKTPIHPNVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R ++TR +  Y +      K
Sbjct: 113 GV---GVEVALQWNDSFQENIYCFTNNIPQRDGGTHLAGFRASMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE+ + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESQMNELLSEYLLENP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++  +I+ +  R 
Sbjct: 230 SDAKIVVGKIIDAARARE 247


>gi|224496350|gb|ACN52556.1| gyrB [Pantoea punctata]
          Length = 246

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 64/257 (24%), Positives = 122/257 (47%), Gaps = 14/257 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
              +  Q +  G+P +PL    +  +  GT + F    + F +   F+   L K  +  +
Sbjct: 1   DGKVHQQTYLHGVPGAPLAVIGET-DSTGTSVRFWASHQTFTNVTDFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       +         + + +++ GG+K +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLIDKRS-------DKSDHYHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R ++TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRASMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE+ + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEER 429
            +A  ++  +I+ +  R
Sbjct: 230 SDAKIVVGKIIDAARAR 246


>gi|169667005|gb|ACA64033.1| GyrB [Pantoea terrea]
 gi|169667007|gb|ACA64034.1| GyrB [Pantoea terrea]
          Length = 247

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 63/258 (24%), Positives = 122/258 (47%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
              +  Q +  G+P +PL    +  +  GT + F    + F +   F+   L K  +  +
Sbjct: 1   DGKVHQQIYQHGVPTAPLAVIGET-DVSGTAVRFWASHQTFTNVTDFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       +         + + +++ GG++ +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLIDKR-------TDKSDHYHYEGGIRAFVEYLNKNKTPIHPNVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R ++TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDSFQENIYCFTNNIPQRDGGTHLAGFRASMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE+ + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESQMNELLSEYLLENP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++  +I+ +  R 
Sbjct: 230 SDAKIVVGKIIDAARARE 247


>gi|281429810|gb|ADA70041.1| DNA gyrase subunit B [Erwinia rhapontici]
          Length = 246

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 67/257 (26%), Positives = 124/257 (48%), Gaps = 14/257 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL    +  +  GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHQQIYVHGVPQAPLSVSGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + +++ GG+K +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIKLEDKRD-------GKSDHYHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH  G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEER 429
            +A  ++  +I+ +  R
Sbjct: 230 SDAKIVVGKIIDAARAR 246


>gi|169248031|gb|ACA51799.1| DNA gyrase subunit B [Aliivibrio logei]
          Length = 305

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 103/295 (34%), Positives = 152/295 (51%), Gaps = 12/295 (4%)

Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           +I F P  + F +   F    L K  +  ++L+  V       +E        + + F F
Sbjct: 19  KIRFWPSDQTFTNV-EFVYEILAKRLRELSFLNSGVSIILQDMRE------EDKSDHFMF 71

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324
            GG++ ++     N++ +  +IF   +E+K      VE A+ W +     I  Y N I  
Sbjct: 72  EGGIQAFVTHLNRNKTPVHQKIFYFDSERK-EDGIVVEVAMQWNDSYQENIFCYTNNIPQ 130

Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382
            +GG H SG R ALTR +  + +      K   S   DD       ++SV + +P+F+ Q
Sbjct: 131 RDGGAHLSGFRSALTRTLNSFMDKEGFSKKAKSSASGDDAREGLTAVVSVKVPDPKFSSQ 190

Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRK 441
           TK KLVS + +  VE+A+ +    +L +NP EA  +   +I+ +  R   RK R    RK
Sbjct: 191 TKDKLVSSEVKSAVESAMNEKLAEFLAENPGEAKMVCSKIIDAARAREAARKAREMTRRK 250

Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496
            A+    LPGKLADC +     +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKI
Sbjct: 251 GALDIAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKI 305


>gi|331029401|gb|AEC49850.1| DNA gyrase beta subunit [Bradyrhizobium sp. SEMIA 6154]
          Length = 223

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 73/232 (31%), Positives = 114/232 (49%), Gaps = 10/232 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS +L + + R +     +F+ G  ++PL+       KRGT +TF 
Sbjct: 1   SGGLHGVGVSVVNALSSKLELRIWRDDKEHYIEFAHGDAVAPLKVVGDAPGKRGTEVTFL 60

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
              + F +   +D A L    +  A+L+  V       +   EK      EE ++ GG++
Sbjct: 61  ASTETFKN-VEYDFATLEHRLRELAFLNSGVHIVLXDMRHAVEKR-----EEMHYSGGVE 114

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGT 329
            +++    N+  I       ++E  G     VE A+ W +   E    + N I   +GGT
Sbjct: 115 EFVKYLDRNKKAIVPAPIMVRSEANGI---GVEAALWWNDSYHENVLCFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
           H +G R ALTR +  YAE    K  I++  DD       +LSV + +P+F+ 
Sbjct: 172 HLAGFRGALTRQVNGYAEANAKKEKIALTGDDCREGLTAVLSVKVPDPKFSS 223


>gi|219963048|gb|ACL68112.1| DNA gyrase subunit B [Xenorhabdus kozodoii]
          Length = 287

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 84/298 (28%), Positives = 140/298 (46%), Gaps = 15/298 (5%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            +  Q +  G+P SPL+       + GT + F P    F     F+   L K  +  ++L
Sbjct: 1   KVHEQTYRLGVPQSPLKVVGDT-EQTGTTVRFWPSMDTFRVNTEFEYDILAKRLRELSFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V       +  AE       + F++ GG+K +++    N++ I   +F   TEK G 
Sbjct: 60  NSGVSIRLIDKRTSAE-------DHFHYEGGIKAFVEFLSRNKNPIHPNVFYFCTEKDGI 112

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRA 354
               VE ++ W +     I  + N I   +GG H  G R A+TR +  Y +      K  
Sbjct: 113 ---NVEISMQWNDGFQENIYCFTNNIPQRDGGAHLVGFRAAMTRTLNSYMDKEGYNKKSK 169

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +
Sbjct: 170 VSATGDDAREGLIAVISVKVPDPKFSSQTKEKLVSSEVKTVVETLMNEKLVEYLLENPND 229

Query: 415 ATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           A  ++  +I+        R+ +    RK A+    LPGKLADC +     +EL++VEG
Sbjct: 230 AKTVVSKIIDAARAREAARKAREMTRRKGAMDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|158252540|gb|ABW23754.1| DNA gyrase [Pantoea punctata]
 gi|158252542|gb|ABW23755.1| DNA gyrase [Pantoea punctata]
 gi|158252560|gb|ABW23764.1| DNA gyrase [Pantoea punctata]
 gi|158252562|gb|ABW23765.1| DNA gyrase [Pantoea punctata]
 gi|158252564|gb|ABW23766.1| DNA gyrase [Pantoea punctata]
 gi|158252566|gb|ABW23767.1| DNA gyrase [Pantoea punctata]
          Length = 247

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 122/258 (47%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
              +  Q +  G+P +PL    +  +  GT + F    + F +   F+   L K  +  +
Sbjct: 1   DGKVHQQTYLHGVPGAPLAVIGET-DSTGTSVRFWASHQTFTNVTDFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       +         + + +++ GG+K +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLIDKRS-------DKSDHYHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R ++TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRASMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE+ + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++  +I+ +  R 
Sbjct: 230 SDAKIVVGKIIDAARARE 247


>gi|158252490|gb|ABW23729.1| DNA gyrase [Pantoea deleyi]
          Length = 247

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 67/258 (25%), Positives = 123/258 (47%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL       +  GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHQQIYVHGVPEAPLAITGDT-DLTGTRVRFWPSYETFTNVRDFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + F++ GG+K +++   +N++ I   +F    EK 
Sbjct: 60  FLNSGVSIRLEDKRD-------GKSDHFHYEGGIKAFVEYLNKNKTPIHPTVFYFSNEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++  +I+ +  R 
Sbjct: 230 ADAKIVVGKIIDAARARE 247


>gi|33087765|gb|AAP93013.1| DNA gyrase subunit B [Yersinia rohdei]
          Length = 184

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 58/195 (29%), Positives = 98/195 (50%), Gaps = 12/195 (6%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS++L + + R+  +  Q +  G+P +PL+   +  ++ GT + F 
Sbjct: 1   SGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYRMGVPQAPLKVVGET-DQTGTTVRFW 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F    L K  +  ++L+  V       +   E       + F++ GG+K
Sbjct: 60  PSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLRDKRNDKE-------DHFHYEGGIK 112

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++   +N++ I  ++F   T K       VE A+ W +     I  + N I   +GGT
Sbjct: 113 AFVEYLNKNKNPIHPKVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGT 169

Query: 330 HESGLRVALTRGIKK 344
           H  G R A+TR +  
Sbjct: 170 HLVGFRTAMTRTLNS 184


>gi|158252626|gb|ABW23797.1| DNA gyrase [Erwinia rhapontici]
          Length = 247

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 67/258 (25%), Positives = 124/258 (48%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL    +  +  GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHQQIYVHGVPQAPLSVSGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + +++ GG+K +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIKLEDKRD-------GKSDHYHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH  G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++  +I+ +  R 
Sbjct: 230 SDAKIVVGKIIDAARARE 247


>gi|224496348|gb|ACN52555.1| gyrB [Brenneria nigrifluens]
          Length = 247

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 67/257 (26%), Positives = 121/257 (47%), Gaps = 13/257 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G   +PL+      +K GT + F P  + F ++  F    L K  +  +
Sbjct: 1   EGKVHEQTYRHGEAQAPLKVVGD-SDKTGTTVRFWPSYETFTNQTEFQYEILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V      ++E        + + F++ GG+K ++     N++ I   +F   T K 
Sbjct: 60  FLNSGVSIRLYDEREKD------KSDHFHYEGGIKAFVDYLNRNKTPIHPTVFYFSTVKD 113

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
                 VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 114 DI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNTYMDKEGYSKK 170

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             IS   DD     + ++SV + +P+F+ QTK KLVS + +  VE+ + +    YL++NP
Sbjct: 171 AKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVESLMNEKLVDYLMENP 230

Query: 413 IEATKLLEWVIERSEER 429
            +A  ++  +I+ +  R
Sbjct: 231 SDAKIVVGKIIDAARAR 247


>gi|125487118|gb|ABN42501.1| gyrase B [Xylella fastidiosa]
 gi|125487120|gb|ABN42502.1| gyrase B [Xylella fastidiosa]
          Length = 283

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 100/284 (35%), Positives = 155/284 (54%), Gaps = 7/284 (2%)

Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312
           ++ G   +++F++ GG++++++   + ++ +   + +   E  G     V+ A+ W +  
Sbjct: 1   DERGEGRRDDFHYEGGIRSFVEHLAQLKTPLHPNVISVTGEHNGI---VVDAALQWTDAY 57

Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGI 369
              +  + N I   +GGTH +G R ALTR +  Y E     R   I    DD+    + +
Sbjct: 58  QETMYCFTNNIPQKDGGTHLAGFRAALTRTLGNYIEQNGVARQAKITFSGDDMREGMIAV 117

Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429
           LSV + EP F+ QTK KLVS D +  VE       + +L +NP EA  +   +++ +  R
Sbjct: 118 LSVKVPEPSFSSQTKEKLVSSDVKPAVEATFGLRLEEFLQENPNEARAIAGKIVDAARAR 177

Query: 430 LRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488
              RK R++ R+   +    LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR NQA
Sbjct: 178 EAARKARDLTRRKGVLDIAGLPGKLADCQEKDPAMSELFIVEGDSAGGSAKQGRNRKNQA 237

Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532
           VLPLRGKILNV  A  +++ ++ ++  L+ ALG          D
Sbjct: 238 VLPLRGKILNVERARFDRMLSSAEVGTLITALGTGIGKDEYNPD 281


>gi|146431204|gb|ABQ40585.1| DNA gyrase B subunit [Vibrio harveyi]
          Length = 219

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 63/224 (28%), Positives = 111/224 (49%), Gaps = 11/224 (4%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       ++ 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+I F P  + F +   F    L K  +  ++L+  V      ++E        + + F
Sbjct: 60  GTQIRFWPSAETFSN-TEFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KSDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            F GG++ +++    N++ I  +IF    E++     +VE A+ W +     I  + N I
Sbjct: 113 MFEGGIQAFVEHLNTNKTPIIEKIFHFDFERED--GISVEVAMQWNDGFQENIYCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISA 366
              +GGTH +G R ALTR +  + +     +     +       
Sbjct: 171 PQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDARE 214


>gi|291196221|emb|CBG14513.1| DNA gyrase subunit B [Pseudomonas parafulva]
          Length = 267

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 79/269 (29%), Positives = 133/269 (49%), Gaps = 14/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS++L +TV R   I+ Q +  G+P +P+E         GT I F+P    F +
Sbjct: 1   VSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMEIVGD-SETTGTHIHFKPSADTFKN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRIRELSFLNSGVGILLKDERSGKE-------EFFKYEGGLRAFVEYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++S++F    +++      VE A+ W +     +  + N I   +GGTH  G R +
Sbjct: 112 NKTPVNSQVFHFSVQRED--GVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSS 169

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  +S   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 170 LTRSLNSYIEQEGLAKKNKVSTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 229

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 230 VEQEMNKYFSDFLLENPNEAKAVVGKMID 258


>gi|224496194|gb|ACN52478.1| gyrB [Pantoea dispersa]
          Length = 246

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 68/257 (26%), Positives = 121/257 (47%), Gaps = 14/257 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
              +  Q +  G+P +PL       +  GTR+ F P    F +   F+   L K  +  +
Sbjct: 1   DGKVHQQTYVHGVPQAPLAVTGDT-DATGTRVRFWPSHDTFTNVTDFEYEILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + +++ GG+K +++    N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLEDKRD-------DKNDHYHYEGGIKAFVEYLNRNKNPIHPNVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     V ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLVAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENP 229

Query: 413 IEATKLLEWVIERSEER 429
            +A  ++  +I+ +  R
Sbjct: 230 SDAKIVVGKIIDAAXAR 246


>gi|52546294|dbj|BAD51530.1| DNA gyrase subunit B [Burkholderia caryophylli]
          Length = 267

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 82/277 (29%), Positives = 132/277 (47%), Gaps = 27/277 (9%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKV 199
           GGLHGVG+S VNALS  L +TV R    +  +F RG+             +SP++   + 
Sbjct: 1   GGLHGVGVSCVNALSKWLRLTVRRDGKKYFMEFHRGVVQNRVIEEADGEQVSPMQYLGET 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
              RGT + F  D  IFG+   +    L K  +  ++L+  V+   +  +   E      
Sbjct: 61  EK-RGTEVHFMADETIFGN-VEYHYDILSKRIRELSFLNNGVRIRLTDQRSGKEDD---- 114

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              +   GG+K +++     ++++   IF    EK+G     VE A+ W +     +  +
Sbjct: 115 ---YALAGGVKGFVEFINRTKTVLHPTIFHVNAEKEGV---GVEVAMQWNDSYNESVLCF 168

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + E
Sbjct: 169 TNNIPQRDGGTHLTGLRAAMTRVINKYIGDHEIAKKAKVETSGDDMREGLSCVLSVKVPE 228

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
           P+F+ QTK KLVS + +  VE  +    + +L++ P 
Sbjct: 229 PKFSSQTKDKLVSSEVRAPVEEIVAKALEEFLLETPN 265


>gi|219963044|gb|ACL68110.1| DNA gyrase subunit B [Xenorhabdus kozodoii]
 gi|219963046|gb|ACL68111.1| DNA gyrase subunit B [Xenorhabdus kozodoii]
          Length = 287

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 84/298 (28%), Positives = 140/298 (46%), Gaps = 15/298 (5%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            +  Q +  G+P SPL+       + GT + F P    F     F+   L K  +  ++L
Sbjct: 1   KVHEQTYRLGVPQSPLKVVGDT-EQTGTTVRFWPSMDTFKVNTEFEYDILAKRLRELSFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V       +  AE       + F++ GG+K +++    N++ I   +F   TEK G 
Sbjct: 60  NSGVSIRLIDKRTSAE-------DHFHYEGGIKAFVEFLSRNKNPIHPNVFYFCTEKDGI 112

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRA 354
               VE ++ W +     I  + N I   +GG H  G R A+TR +  Y +      K  
Sbjct: 113 ---NVEISMQWNDGFQENIYCFTNNIPQRDGGAHLVGFRAAMTRTLNSYMDKEGYNKKSK 169

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
           +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +
Sbjct: 170 VSATGDDAREGLIAVISVKVPDPKFSSQTKEKLVSSEVKTVVETLMNEKLVEYLLENPND 229

Query: 415 ATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           A  ++  +I+        R+ +    RK A+    LPGKLADC +     +EL++VEG
Sbjct: 230 AKTVVSKIIDAARAREAARKAREMTRRKGAMDLAGLPGKLADCQERDPALSELYLVEG 287


>gi|281331636|emb|CAZ40012.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 237

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 73/247 (29%), Positives = 126/247 (51%), Gaps = 13/247 (5%)

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS +L + + +    + Q+++ G  L PL++       RGT + F P  
Sbjct: 1   LHGVGVSVVNALSQKLVLDIYQGGFHYQQEYADGAALHPLKQVGPSTK-RGTTLRFWPSV 59

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F D   F    L +  +  ++L+  VK     ++          +++F++ GG+++++
Sbjct: 60  KAFHDNVEFHYDILARRLRELSFLNSGVKIVLVDERGD------GRRDDFHYEGGIRSFV 113

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   + ++ +   + +   E  G    TVE A+ W +     +  + N I   +GGTH +
Sbjct: 114 EHLAQLKTPLHPNVISVTGESNGI---TVEVALQWTDSYQETMYCFTNNIPQKDGGTHLA 170

Query: 333 GLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR +  Y E     +   I++  DD+    + +LSV + +P F+ QTK KLVS 
Sbjct: 171 GFRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSS 230

Query: 391 DAQRTVE 397
           D +  VE
Sbjct: 231 DVRPAVE 237


>gi|224496244|gb|ACN52503.1| gyrB [Pantoea stewartii subsp. stewartii]
          Length = 246

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 69/257 (26%), Positives = 123/257 (47%), Gaps = 14/257 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL       +  GTRI F P    F +   F+   L K  +  +
Sbjct: 1   EGKVHQQIYLHGVPEAPLAVTGDT-DATGTRIRFWPSHDTFTNVTDFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + F++ GG+K +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLEDKRD-------GKNDHFHYEGGIKAFVEYLNKNKTPIHPTVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEER 429
            +A  ++  +I+ +  R
Sbjct: 230 GDAKIVVGKIIDAARAR 246


>gi|158252556|gb|ABW23762.1| DNA gyrase [Pantoea punctata]
          Length = 247

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 120/258 (46%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
              +  Q +  G+P +PL    +  +  GT + F    + F +   F+   L K  +  +
Sbjct: 1   DGKVHQQTYLHGVPGAPLAVIGET-DSTGTSVRFWASHQTFTNVTDFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       +         + + +++ GG+K +     +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLIDKRS-------DKSDHYHYEGGIKAFAGDLNKNKTPIHPNVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R ++TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRASMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE+ + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKNKLVSSEVKSAVESQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++  +I+ +  R 
Sbjct: 230 SDAKIVVGKIIDAARARE 247


>gi|164456735|dbj|BAF97860.1| gyrase B subunit [Vibrio tasmaniensis]
          Length = 262

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 77/271 (28%), Positives = 130/271 (47%), Gaps = 13/271 (4%)

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS ++ +T+ R   I +Q +S G P +PL       +K GT I F P  + F +  
Sbjct: 1   VVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGDT-DKTGTEIRFWPSEETFTN-I 58

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L K  +  ++L+  V       +E        + + F + GG++ +++    N+
Sbjct: 59  EFHYDILAKRLRELSFLNSGVSIKLIDKRE------EDKMDHFEYEGGIQAFVEHLNTNK 112

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + I  +IF    E++     TVE A+ W +     I  + N I   +GG H +G R ALT
Sbjct: 113 TPIIQKIFHFDHERED--GITVEVAMQWNDGYQENIYCFTNNIPQRDGGAHLAGFRGALT 170

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  + +      K   S   DD       I+SV + +P+F+ QTK KLVS + +  VE
Sbjct: 171 RTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVE 230

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEE 428
           + + +    +L++NP EA  +   +I+ +  
Sbjct: 231 STMGEKLSEFLIENPGEAKIVCSKIIDAARA 261


>gi|158252484|gb|ABW23726.1| DNA gyrase [Pantoea stewartii subsp. indologenes]
 gi|158252494|gb|ABW23731.1| DNA gyrase [Pantoea stewartii subsp. indologenes]
 gi|158252590|gb|ABW23779.1| DNA gyrase [Pantoea stewartii subsp. indologenes]
 gi|158252592|gb|ABW23780.1| DNA gyrase [Pantoea stewartii subsp. indologenes]
 gi|158252594|gb|ABW23781.1| DNA gyrase [Pantoea stewartii subsp. indologenes]
 gi|158252602|gb|ABW23785.1| DNA gyrase [Pantoea stewartii subsp. indologenes]
 gi|158252604|gb|ABW23786.1| DNA gyrase [Pantoea stewartii subsp. indologenes]
 gi|158252610|gb|ABW23789.1| DNA gyrase [Pantoea stewartii subsp. stewartii]
 gi|158252612|gb|ABW23790.1| DNA gyrase [Pantoea stewartii subsp. stewartii]
 gi|158252614|gb|ABW23791.1| DNA gyrase [Pantoea stewartii subsp. stewartii]
          Length = 247

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 69/258 (26%), Positives = 123/258 (47%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL       +  GTRI F P    F +   F+   L K  +  +
Sbjct: 1   EGKVHQQIYLHGVPEAPLAVTGDT-DATGTRIRFWPSHDTFTNVTDFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + F++ GG+K +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLEDKRD-------GKNDHFHYEGGIKAFVEYLNKNKTPIHPTVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++  +I+ +  R 
Sbjct: 230 GDAKIVVGKIIDAARARE 247


>gi|146431190|gb|ABQ40578.1| DNA gyrase B subunit [Vibrio harveyi]
          Length = 218

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 63/224 (28%), Positives = 111/224 (49%), Gaps = 11/224 (4%)

Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203
           D+++Y++SGGLHGVG+SVVNALS+++ +T+ R   I +Q +  G P +PL       ++ 
Sbjct: 1   DDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQT 59

Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263
           GT+I F P  + F +   F    L K  +  ++L+  V      ++E        + + F
Sbjct: 60  GTQIRFWPSAETFSN-TEFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KSDHF 112

Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322
            F GG++ +++    N++ I  +IF    E++     +VE A+ W +     I  + N I
Sbjct: 113 MFEGGIQAFVEHLNTNKTPIIEKIFHFDFERED--GISVEVAMQWNDGFQENIYCFTNNI 170

Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISA 366
              +GGTH +G R ALTR +  + +     +     +       
Sbjct: 171 PQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDARE 214


>gi|66271262|gb|AAY43844.1| DNA gyrase subunit B [Vibrio sp. CRWP 9805]
          Length = 281

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 77/271 (28%), Positives = 136/271 (50%), Gaps = 13/271 (4%)

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           V +SVVNALS+++ +T+ R   I +Q +  G P +PL       ++ GT+I F P  + F
Sbjct: 1   VRVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETF 59

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   F    L K  +  ++L+  V      ++E        + + F F GG++ +++  
Sbjct: 60  SN-TEFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KSDHFMFEGGIQAFVEHL 112

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
             N++ I  +IF    E++     +VE A+ W +     I  + N I   +GGTH +G R
Sbjct: 113 NTNKTPIIEKIFHFDFERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFR 170

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +
Sbjct: 171 AALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVK 230

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
             VE+A+ +    +L++NP EA  +   +I+
Sbjct: 231 SAVESAMGEKLSEFLIENPTEAKMVCSKIID 261


>gi|18916408|dbj|BAB85500.1| DNA gyrase subunit B [Rhodopseudomonas palustris ATCC 17001]
          Length = 223

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 74/232 (31%), Positives = 110/232 (47%), Gaps = 10/232 (4%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
            ++Y++SGGLHGVG+SVVNALS +L + V R +     +F+ G  ++PL+       KRG
Sbjct: 1   QNSYKVSGGLHGVGVSVVNALSSKLLLRVWRNDKEHYIEFAHGDAVAPLKVVGDANGKRG 60

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T +TF    + F     +D A L    +  A+L+  V    S  +   EK      EE  
Sbjct: 61  TEVTFYASAETF-THIEYDFATLEHRLRELAFLNSGVYIVLSDMRHAVEKR-----EEMR 114

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323
           + GG+  +++    N+  I         E  G     VE A+ W +   E    + N I 
Sbjct: 115 YEGGVTEFVKYLDRNKKPIVPTPVVIGAELNGIM---VEAALWWNDTYHENVLCFTNNIP 171

Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIR 375
             +GGTH +G R ALTR I  YAE    K  +++  DD       +LSV + 
Sbjct: 172 QRDGGTHLAGFRAALTRQITGYAEAGSKKEKVALTGDDCREGLTAVLSVKVP 223


>gi|224496352|gb|ACN52557.1| gyrB [Tatumella morbirosei]
          Length = 246

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 64/257 (24%), Positives = 122/257 (47%), Gaps = 14/257 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
              +  Q +  G+P +PL    +  +  GT + F    + F +   F+   L K  +  +
Sbjct: 1   DGKVHQQTYLHGVPSAPLNVVGET-DSTGTSVRFWASHQTFTNVTDFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       +         + + +++ GG+K +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLIDKRS-------DKSDHYHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R ++TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRASMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE+ + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEER 429
            +A  ++  +I+ +  R
Sbjct: 230 SDAKIVVGKIIDAARAR 246


>gi|158252554|gb|ABW23761.1| DNA gyrase [Pantoea citrea]
 gi|169667009|gb|ACA64035.1| GyrB [Tatumella morbirosei]
 gi|169667011|gb|ACA64036.1| GyrB [Tatumella morbirosei]
          Length = 247

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 122/258 (47%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
              +  Q +  G+P +PL    +  +  GT + F    + F +   F+   L K  +  +
Sbjct: 1   DGKVHQQTYLHGVPSAPLNVVGET-DSTGTSVRFWASHQTFTNVTDFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       +         + + +++ GG+K +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLIDKRS-------DKSDHYHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R ++TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRASMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE+ + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++  +I+ +  R 
Sbjct: 230 SDAKIVVGKIIDAARARE 247


>gi|148470294|gb|ABQ66094.1| gyrase b [uncultured bacterium]
          Length = 366

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 86/326 (26%), Positives = 138/326 (42%), Gaps = 33/326 (10%)

Query: 131 EIILTTLHAGGKFDNSTY-EISGGLH-GVGISVVNALSDELHVTV-ARQNTIFSQK-FSR 186
           E+I+T LHAGGKFD+++Y  +SGGL  GVG+SVVNALS +LH+ +  R   +  ++ +  
Sbjct: 1   EVIMTVLHAGGKFDDNSYTRVSGGLQDGVGVSVVNALSSKLHLIILHRAGQVHEKQEYHH 60

Query: 187 GIPLSPLEKKEKVRNKRGTRITFRP----DPKIFGDKAGFDAARLLKM-TQSKAYLSGRV 241
           G    PL       +  GT +               +  F+   L +   +  ++L+  V
Sbjct: 61  GDTQYPLRVLIGETDSSGTTVNRFWPSGLTFSHGECRTIFNVEILARRLLRELSFLNAGV 120

Query: 242 KTCWSCDKEIAEKYG-------------------IPEKEEFYFPGGLKTYLQTKLENRSL 282
           +     ++   E                          E F+F                 
Sbjct: 121 RIVLRDERINLEHVYAXYEGGLSEFVKYFINEGKTHLNEIFHFXTADTENGIGVKYINEG 180

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR--VALT 339
            +             +   VE A+ W +     +  + N I   +GGTH +G R   ALT
Sbjct: 181 KNHLNEIFHFTADADNGIAVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRALQALT 240

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           RG+ +Y E      K  +++  DD       I+SV + +P+F+ QTK KLVS + +  VE
Sbjct: 241 RGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKPAVE 300

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVI 423
            A+   F  YL++NP  A  +   +I
Sbjct: 301 QAMNKEFSAYLLENPQAAKSIAGKII 326


>gi|331029383|gb|AEC49841.1| DNA gyrase beta subunit [Bradyrhizobium sp. SEMIA 656]
          Length = 225

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 73/234 (31%), Positives = 117/234 (50%), Gaps = 10/234 (4%)

Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208
           ++SGGLHGVG+SVVNALS +L + + R +     +F+ G  ++PL+       KRGT +T
Sbjct: 1   QVSGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHGDAVAPLKVVGDAPGKRGTEVT 60

Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268
           F    + F +   +D A L    +  A+L+  V    S  +   EK      EE ++ GG
Sbjct: 61  FLASTETFKN-IEYDFATLEHRLRELAFLNSGVNIILSDMRHAVEKR-----EEMHYSGG 114

Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEG 327
           ++ +++    N+  +       ++E  G     VE A+ W +   E    + N I   +G
Sbjct: 115 VEEFVKYLDRNKKALVPAPIMVRSEANGI---GVEAALWWNDSYHENVLCFTNNIPQRDG 171

Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAG 381
           GTH +G R ALTR +  YAE    K  I++  DD       +LSV + +P+F+ 
Sbjct: 172 GTHLAGFRGALTRQVNGYAEANAKKEKIALTGDDCREGLTAVLSVKVPDPKFSS 225


>gi|315936446|gb|ADU55851.1| DNA gyrase [Erwinia tracheiphila]
 gi|315936448|gb|ADU55852.1| DNA gyrase [Erwinia tracheiphila]
          Length = 247

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 68/258 (26%), Positives = 126/258 (48%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q ++ G+P +PL    +  +  GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHQQIYAHGVPQAPLGVTGET-DLTGTRVRFWPSHETFTNVTDFEYEILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        +K+ +++ GG+K +++    N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIKLEDKRD-------DKKDHYHYEGGIKAFVEYLNRNKTPIHPNVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++  +I+ +  R 
Sbjct: 230 GDAKTVVGKIIDAARARE 247


>gi|281331998|emb|CAZ39973.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 250

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 76/260 (29%), Positives = 131/260 (50%), Gaps = 13/260 (5%)

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SV NALS +L V V +  + + Q+FS G  ++ L K E     RGT + F P  
Sbjct: 1   LHGVGVSVDNALSQKLLVDVFQNGSHYQQEFSNGAAVTALAKLEATTK-RGTTVRFWPST 59

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
             F D   F    L +  +  ++L+  VK   + ++          +++F++ GG+++++
Sbjct: 60  VAFHDNVEFHYDILARRLRELSFLNSGVKIVLADERGD------GRRDDFHYEGGIRSFV 113

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   + ++ +   + +   E  G     V+ A+ W +     +  + N I   +GGTH +
Sbjct: 114 EHLAQLKTPLHPNVISVTGEHNGI---VVDVALQWTDSYQETMYCFTNNIPQKDGGTHLA 170

Query: 333 GLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR +  Y E     +   I++  DD+    + +LSV + +P F+ QTK KLVS 
Sbjct: 171 GFRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSS 230

Query: 391 DAQRTVENALRDPFDHYLVQ 410
           D +  VENA     + +L +
Sbjct: 231 DVRPAVENAFGARLEEFLQE 250


>gi|164456609|dbj|BAF97797.1| gyrase B subunit [Photobacterium angustum]
          Length = 259

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 73/269 (27%), Positives = 132/269 (49%), Gaps = 13/269 (4%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS+++ +T+ R   I+ Q +  G+P +PL          GTRI F P    F +   F 
Sbjct: 1   ALSEKVELTIQRAGHIYQQVYRHGVPDAPLAVIGDTEK-TGTRIRFWPSEDTFTNI-EFH 58

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L K  +  ++L+  V    S ++E        +++ F + GG++ +++    N++ I
Sbjct: 59  YDILAKRLRELSFLNSGVSINLSDERED------GKEDHFMYEGGIRAFVEHLNRNKTPI 112

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
             ++F   +E+      +VE A+ W +     I  + N I   +GGTH +G R ALTR +
Sbjct: 113 HPKVFHFDSERDD--GISVEVAMQWNDGFQESIYCFTNNIPQRDGGTHLAGFRGALTRTL 170

Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE+A+
Sbjct: 171 NSFMDKEGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAAVESAM 230

Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEER 429
            +    +L++NP +A  +   +I+ S  R
Sbjct: 231 NEKLAEFLLENPADAKTVCTKIIDASRAR 259


>gi|291196199|emb|CBG14491.1| DNA gyrase subunit B [Pseudomonas monteilii]
          Length = 267

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 77/269 (28%), Positives = 132/269 (49%), Gaps = 14/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS++L +TV R   I+ Q +  G+P +P+          GT I F+P  + F +
Sbjct: 1   VSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGD-SETTGTHIHFKPSAETFKN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRIRELSFLNSGVGILLKDERSGKE-------EFFKYEGGLRAFVEYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++S++F    ++       VE A+ W +     +  + N I   +GGTH  G R +
Sbjct: 112 NKTPVNSQVFHFNVQRDD--GVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSS 169

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 170 LTRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 229

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 230 VEQEMNKYFADFLLENPNEAKAVVGKMID 258


>gi|315644566|ref|ZP_07897698.1| transcriptional regulator, ArsR family protein [Paenibacillus
           vortex V453]
 gi|315280073|gb|EFU43370.1| transcriptional regulator, ArsR family protein [Paenibacillus
           vortex V453]
          Length = 372

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 97/185 (52%), Gaps = 6/185 (3%)

Query: 63  GMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122
           GMY G +    +H L   V++N++ E   GY N I + L G+G +TV DNGRGIPV+  P
Sbjct: 191 GMYFGTSQNFDIHQLLWAVVENSILEHTNGYGNQIGIFLHGDGSVTVTDNGRGIPVQALP 250

Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
              +   ++ ILT +H      ++ + + G   G+ I+VVNALS  L V + R   ++ Q
Sbjct: 251 -NSSIPAVQSILTDVHRLN--SSAHFLVPGAEKGISIAVVNALSQRLAVEIRRDGKVYRQ 307

Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
           ++  GIP + L      ++  GT +TF+P+P++FG    F+   +++  ++       + 
Sbjct: 308 EYRHGIPQTGLLTVGLTQD-TGTSVTFKPEPELFGS--AFEMNHIMERKKAIDADYPELI 364

Query: 243 TCWSC 247
                
Sbjct: 365 LTIGD 369


>gi|298112101|gb|ADI58435.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|298112103|gb|ADI58436.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|298112105|gb|ADI58437.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|298112107|gb|ADI58438.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|298112109|gb|ADI58439.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|298112113|gb|ADI58441.1| DNA gyrase subunit B [Pseudomonas viridiflava]
 gi|298112115|gb|ADI58442.1| DNA gyrase subunit B [Pseudomonas viridiflava]
          Length = 213

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 65/216 (30%), Positives = 105/216 (48%), Gaps = 13/216 (6%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEILLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SD 59

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             GT+I F+P    F +   F    L K  +  ++L+  V      ++   E       E
Sbjct: 60  TTGTQIHFKPSADTFKNIH-FSWDILAKRIRELSFLNSGVGIMLKDERSGKE-------E 111

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F + GGL+ +++    N++ ++           G     VE A+ W +     +  + N
Sbjct: 112 LFKYEGGLRAFVEYLNTNKTPVNEVFHFNVQRDDGV---GVEIALQWNDSFNENLLCFTN 168

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
            I   +GGTH  G R ALTR +  Y E     +   
Sbjct: 169 NIPQRDGGTHLVGFRSALTRNLNNYIEQEGLAKKHK 204


>gi|158252538|gb|ABW23753.1| DNA gyrase [Pantoea ananatis]
          Length = 247

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 67/258 (25%), Positives = 121/258 (46%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL       +  GTRI F P    F +   F+   L K  +  +
Sbjct: 1   EGKVHQQIYLHGVPEAPLAVTGDT-DATGTRIRFWPSHDTFTNVTDFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++          + F++ GG++ +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLEDKRDA-------RNDHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +   ++  +I+ +  R 
Sbjct: 230 GDPKIVVGKIIDAARARE 247


>gi|315936440|gb|ADU55848.1| DNA gyrase [Erwinia papayae]
 gi|315936442|gb|ADU55849.1| DNA gyrase [Erwinia mallotivora]
 gi|315936444|gb|ADU55850.1| DNA gyrase [Erwinia mallotivora]
          Length = 247

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 68/258 (26%), Positives = 125/258 (48%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL    +  +  GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHQQIYVHGVPQAPLSVTGET-DLTGTRVRFWPSHETFTNVTDFEYEILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        +K+ +++ GG+K +++    N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIKLEDKRD-------DKKDHYHYEGGIKAFVEYLNRNKTPIHPNVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLGEYLLENP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++  +I+ +  R 
Sbjct: 230 GDAKIVVGKIIDAARARE 247


>gi|158252628|gb|ABW23798.1| DNA gyrase [Tatumella ptyseos]
          Length = 247

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 63/258 (24%), Positives = 121/258 (46%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
              +  Q +  G+P +PL    +  +  GT + F    + F +   F+   L K  +  +
Sbjct: 1   DGKVHQQIYQHGVPTAPLAVIGET-DVSGTAVRFWASHQTFTNVTDFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       +         + + +++ GG++ +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLIDKR-------TDKSDHYHYEGGIRAFVEYLNKNKTPIHPNVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R ++TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDSFQENIYCFTNNIPQRDGGTHLAGFRASMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE+ + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESQMNELLSEYLLENP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++   I+ +  R 
Sbjct: 230 SDAKIVVGKXIDAARARE 247


>gi|223674692|gb|ACN13042.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
          Length = 216

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 108/228 (47%), Gaps = 15/228 (6%)

Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202
           FD+++Y++SGGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  + 
Sbjct: 1   FDDNSYKVSGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDT 59

Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262
            GT+I F+P    F +   F    L K  +  ++L+  V      ++   E       E 
Sbjct: 60  TGTQIHFKPSADTFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------EL 111

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           F + GGL+ +++    N++ ++           G     VE A+ W +     +  + N 
Sbjct: 112 FKYEGGLRAFVEYLNTNKTPVNQVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNN 168

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
           I   +GGTH  G R ALTR +  Y E      K  ++   DD      
Sbjct: 169 IPQRDGGTHLVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLT 216


>gi|158252506|gb|ABW23737.1| DNA gyrase [Pantoea sp. LMG 24202]
 gi|158252514|gb|ABW23741.1| DNA gyrase [Pantoea sp. LMG 24203]
 gi|158252516|gb|ABW23742.1| DNA gyrase [Pantoea sp. LMG 24248]
 gi|213054387|gb|ACJ39413.1| DNA gyrase [Pantoea allii]
 gi|213054389|gb|ACJ39414.1| DNA gyrase [Pantoea allii]
 gi|213054391|gb|ACJ39415.1| DNA gyrase [Pantoea allii]
 gi|213054393|gb|ACJ39416.1| DNA gyrase [Pantoea allii]
 gi|213054395|gb|ACJ39417.1| DNA gyrase [Pantoea allii]
          Length = 247

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 68/258 (26%), Positives = 122/258 (47%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL       +  GTRI F P    F +   F+   L K  +  +
Sbjct: 1   EGKVHQQIYVHGVPQAPLAATGDT-DATGTRIRFWPSHDTFTNVTDFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++          + F++ GG++ +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLEDKRDA-------RNDHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++  +I+ +  R 
Sbjct: 230 GDAKIVVGKIIDAARARE 247


>gi|281332024|emb|CAZ39986.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 236

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 72/246 (29%), Positives = 124/246 (50%), Gaps = 13/246 (5%)

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS +L + + +    + Q+++ G  L PL+        RGT + F P  
Sbjct: 1   LHGVGVSVVNALSQKLVLDIYQGGFHYQQEYADGAALHPLKXIGPSTK-RGTTLRFWPSV 59

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F D   F    L +  +  ++L+  VK     ++          +++F++ GG+++++
Sbjct: 60  KAFHDNVEFHYDILARRLRELSFLNSGVKIVLVDERGD------GRRDDFHYEGGIRSFV 113

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   + ++ +   + +   E  G    TVE A+ W +     +  + N I   +GGTH +
Sbjct: 114 EHLAQLKTPLHPNVISVTGESNGI---TVEVALQWTDSYQETMYCFTNNIPQKDGGTHLA 170

Query: 333 GLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR +  Y E     +   I++  DD+    + +LSV + +P F+ QTK KLVS 
Sbjct: 171 GFRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSS 230

Query: 391 DAQRTV 396
           D +  V
Sbjct: 231 DVRPAV 236


>gi|224496336|gb|ACN52549.1| gyrB [Erwinia amylovora]
 gi|224496338|gb|ACN52550.1| gyrB [Erwinia pyrifoliae DSM 12163]
          Length = 246

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 65/257 (25%), Positives = 124/257 (48%), Gaps = 14/257 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P + L    +  +  GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + +++ GG+K +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIKLEDKRD-------GKNDHYHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL+++P
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLEHP 229

Query: 413 IEATKLLEWVIERSEER 429
            +A  ++  +I+ +  R
Sbjct: 230 GDAKIVVGKIIDAARAR 246


>gi|52546292|dbj|BAD51529.1| DNA gyrase subunit B [Burkholderia caryophylli]
          Length = 267

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 81/277 (29%), Positives = 131/277 (47%), Gaps = 27/277 (9%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKV 199
           GGLHGVG+S VNALS  L +TV R    +  +F RG+             +SP++   + 
Sbjct: 1   GGLHGVGVSCVNALSKWLRLTVRRDGKKYFMEFHRGVVQNRVIEEADGEQVSPMQYLGET 60

Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259
              RGT + F  D  IFG+   +    L K  +  ++L+  V+   +  +   E      
Sbjct: 61  EK-RGTEVHFMADETIFGN-VEYHYDILSKRIRELSFLNNGVRIRLTDQRSGKEDD---- 114

Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318
              +   GG+K +++     ++++   IF    EK+G     VE A+ W +     +  +
Sbjct: 115 ---YALAGGVKGFVEFINRTKTVLHPTIFHVNAEKEGV---GVEVAMQWNDSYNESVLCF 168

Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376
            N I   +GGTH +GLR A+TR I KY    +   K  +    DD+      +LSV + E
Sbjct: 169 TNNIPQRDGGTHLTGLRAAMTRVINKYIGDHEIAKKAKVETSGDDMREGLSCVLSVKVPE 228

Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
           P+F+ QTK KLVS + +  V   +    + +L++ P 
Sbjct: 229 PKFSSQTKDKLVSSEVRAPVGEIVAKALEEFLLETPN 265


>gi|158252510|gb|ABW23739.1| DNA gyrase [Pantoea ananatis]
 gi|158252518|gb|ABW23743.1| DNA gyrase [Pantoea ananatis]
 gi|158252520|gb|ABW23744.1| DNA gyrase [Pantoea ananatis]
 gi|158252528|gb|ABW23748.1| DNA gyrase [Pantoea ananatis]
          Length = 247

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL       +  GTRI F P    F +   F+   L K  +  +
Sbjct: 1   EGKVHQQIYLHGVPEAPLAVTGDT-DATGTRIRFWPSHDTFTNVTDFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++          + F++ GG++ +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLEDKRDA-------RNDHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + EP+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPEPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++  +I+ +  R 
Sbjct: 230 GDAKIVVGKIIDAARARE 247


>gi|239947931|ref|ZP_04699684.1| DNA gyrase subunit B [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239922207|gb|EER22231.1| DNA gyrase subunit B [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 145

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 56/136 (41%), Gaps = 21/136 (15%)

Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK 609
            I+ L LT F      L              ++   ++             L    + GK
Sbjct: 30  QISKLALTIFDVFGKQL--------------KLIVKSQEFDILTPSQL---LNTIIECGK 72

Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669
             I I RFKGLGEM + QL ET +   KRTLL+V + +    + + +   + LMG   + 
Sbjct: 73  KGINIQRFKGLGEMNSDQLWETTLAPAKRTLLQVRVVE----VDEAEGIFSTLMGDVVEP 128

Query: 670 RFKFIQERASFIDDVG 685
           R  FIQ  A  + ++ 
Sbjct: 129 RRLFIQANALNVVNLD 144


>gi|224496230|gb|ACN52496.1| gyrB [Pantoea ananatis]
 gi|224496232|gb|ACN52497.1| gyrB [Pantoea ananatis]
 gi|224496234|gb|ACN52498.1| gyrB [Pantoea ananatis]
 gi|224496236|gb|ACN52499.1| gyrB [Pantoea ananatis]
 gi|224496238|gb|ACN52500.1| gyrB [Pantoea ananatis LMG 20103]
          Length = 246

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 68/257 (26%), Positives = 122/257 (47%), Gaps = 14/257 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL       +  GTRI F P    F +   F+   L K  +  +
Sbjct: 1   EGKVHQQIYLHGVPEAPLAVTGDT-DATGTRIRFWPSHDTFTNVTDFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++          + F++ GG++ +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLEDKRDA-------RNDHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEER 429
            +A  ++  +I+ +  R
Sbjct: 230 GDAKIVVGKIIDAARAR 246


>gi|315936456|gb|ADU55856.1| DNA gyrase [Erwinia amylovora]
 gi|315936458|gb|ADU55857.1| DNA gyrase [Erwinia pyrifoliae DSM 12163]
          Length = 247

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 65/258 (25%), Positives = 124/258 (48%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P + L    +  +  GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + +++ GG+K +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIKLEDKRD-------GKNDHYHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL+++P
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLEHP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++  +I+ +  R 
Sbjct: 230 GDAKIVVGKIIDAARARE 247


>gi|158252492|gb|ABW23730.1| DNA gyrase [Pantoea ananatis]
 gi|158252496|gb|ABW23732.1| DNA gyrase [Pantoea ananatis]
 gi|158252508|gb|ABW23738.1| DNA gyrase [Pantoea ananatis]
 gi|158252512|gb|ABW23740.1| DNA gyrase [Pantoea ananatis]
 gi|158252524|gb|ABW23746.1| DNA gyrase [Pantoea ananatis]
 gi|158252530|gb|ABW23749.1| DNA gyrase [Pantoea ananatis]
 gi|158252532|gb|ABW23750.1| DNA gyrase [Pantoea ananatis]
 gi|158252536|gb|ABW23752.1| DNA gyrase [Pantoea ananatis]
 gi|158252548|gb|ABW23758.1| DNA gyrase [Pantoea ananatis LMG 20103]
 gi|158252550|gb|ABW23759.1| DNA gyrase [Pantoea ananatis]
 gi|158252552|gb|ABW23760.1| DNA gyrase [Pantoea ananatis]
 gi|158252598|gb|ABW23783.1| DNA gyrase [Pantoea ananatis]
 gi|158252600|gb|ABW23784.1| DNA gyrase [Pantoea ananatis]
 gi|158252606|gb|ABW23787.1| DNA gyrase [Pantoea ananatis]
 gi|158252608|gb|ABW23788.1| DNA gyrase [Pantoea ananatis]
          Length = 247

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 68/258 (26%), Positives = 122/258 (47%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL       +  GTRI F P    F +   F+   L K  +  +
Sbjct: 1   EGKVHQQIYLHGVPEAPLAVTGDT-DATGTRIRFWPSHDTFTNVTDFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++          + F++ GG++ +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLEDKRDA-------RNDHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++  +I+ +  R 
Sbjct: 230 GDAKIVVGKIIDAARARE 247


>gi|158699674|gb|ABW76855.1| DNA gyrase subunit B [Alcanivorax dieselolei]
 gi|158699676|gb|ABW76856.1| DNA gyrase subunit B [Alcanivorax dieselolei]
          Length = 299

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 89/311 (28%), Positives = 146/311 (46%), Gaps = 16/311 (5%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+ L +T+ R   +  Q +  G+P  PLE         GT I FRP    F +   F
Sbjct: 1   NALSETLKLTIRRHGKVHEQVYHDGVPEKPLEVVG-TTESSGTAIRFRPSSGTFNNI-QF 58

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  ++L+  V+     ++   E       + F + GGL  ++    +N++ 
Sbjct: 59  HYDILAKRLRELSFLNSGVRIHLVDERSGDE-------DVFEYEGGLSAFVTYLNQNKNS 111

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           ++         + G    +VE A+ W +     I  Y N I   +GGTH +G R ALTR 
Sbjct: 112 LNQVFHFQVDREDGI---SVEVAMQWNDSYQENIFCYTNNIPQRDGGTHLAGFRAALTRT 168

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +  Y E      +   +   DD       I+SV + +P+F+ QTK KLVS + +  VE  
Sbjct: 169 LNNYMEKEGFLKREKANPSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKSAVEQT 228

Query: 400 LRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
           + + F  +L+++P+E+  +++ +I         R+ +    RK A+    LPGKLADC +
Sbjct: 229 MTERFQDFLLEHPVESKNIVQKIIDAARARDAARKAREMTRRKGALDIAGLPGKLADCQE 288

Query: 459 NIAHGTELFIV 469
                +EL+IV
Sbjct: 289 KDPALSELYIV 299


>gi|61844905|emb|CAG44522.1| DNA gyrase subunit B [Mycobacterium sp. CIPT 140070007]
          Length = 319

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 89/324 (27%), Positives = 147/324 (45%), Gaps = 35/324 (10%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L V + R    +SQ + +  PL    K+     K G+ + F  DP +F     +
Sbjct: 1   NALSTRLEVEIKRDGYEWSQVYEKSEPLGL--KQGAPTKKTGSTVRFWADPAVFETT-EY 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY-------------------------GI 257
           D   + +  Q  A+L+  +    + ++   ++                            
Sbjct: 58  DFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASERAAESTAPHK 117

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
            +   F++PGGL  +++     ++ I S I     +  G     VE A+ W       + 
Sbjct: 118 VKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGH---EVEIAMQWNAGYSESVH 174

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
           ++ NTI T EGGTHE G R ALT  + KYA+  +   ++  ++  DD+      ++SV +
Sbjct: 175 TFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKEKDPNLTGDDIREGLAAVISVKV 234

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP+F GQTKTKL + + +  V+    +   H+   NP +A  ++   +  ++ R+  RK
Sbjct: 235 SEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQARIAARK 294

Query: 435 QRE-VNRKTAIRKLRLPGKLADCS 457
            RE V RK+A     LPGKLADC 
Sbjct: 295 ARELVRRKSATDIGGLPGKLADCR 318


>gi|50871516|emb|CAF74830.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 283

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 79/270 (29%), Positives = 130/270 (48%), Gaps = 15/270 (5%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+EL +T+ R   ++ Q +  G+P +PL    +  +  GT+I F+P  + F 
Sbjct: 1   GVSVVNALSEELVLTIRRSGRVWEQVYRHGVPQAPLAAVGETED-TGTQIHFKPSAETFQ 59

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL  ++    
Sbjct: 60  NIH-FSWDILAKRLRELSFLNSGVGILLRDERNGKE-------EMFKYEGGLSAFVGYLN 111

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++           G     VE A+ W +     I  + N I   +GGTH +G R 
Sbjct: 112 TNKTPVNEIFHFNVQRDDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRS 168

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  +S   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 169 ALTRNLNTYIEQEGLAKKHKVSTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 228

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            VE  +   F  +L+++P EA  ++  +I+
Sbjct: 229 AVEQEMGKYFADFLLEHPNEAKAVVGKMID 258


>gi|158252618|gb|ABW23793.1| DNA gyrase [Pantoea ananatis]
          Length = 247

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 68/258 (26%), Positives = 122/258 (47%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL       +  GTRI F P    F +   F+   L K  +  +
Sbjct: 1   EGKVHQQIYLHGVPDAPLAVTGDT-DATGTRIRFWPSHDTFTNVTDFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++          + F++ GG++ +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLEDKRDA-------RNDHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++  +I+ +  R 
Sbjct: 230 GDAKIVVGKIIDAARARE 247


>gi|39837178|emb|CAE84984.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 283

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 84/289 (29%), Positives = 141/289 (48%), Gaps = 15/289 (5%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNAL++EL +T+ R+  ++ Q +  G+P  PL+  ++  +  GT+I F+P  + F 
Sbjct: 1   GVSVVNALTEELMLTIRREGKVWEQLYRDGVPQVPLDPADET-DTSGTQIHFKPSSETFQ 59

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL  ++    
Sbjct: 60  NIH-FSWDILAKRLRELSFLNSGVGIVLRDERTAKE-------ELFKYEGGLSAFVAYLN 111

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++           G     VE A+ W +     I  + N I   +GGTH +G R 
Sbjct: 112 TNKTPVNEVFHFNVQRDAGV---GVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRS 168

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  I+   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 169 ALTRNLNSYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 228

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443
            VE  +   F  +L+++P EA  ++  +I+ +  R   RK RE+ R+  
Sbjct: 229 AVEQEMGKYFGDFLLEHPGEAKAVVGKMIDAARAREPARKAREMTRRKG 277


>gi|50871514|emb|CAF74829.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 283

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 80/270 (29%), Positives = 131/270 (48%), Gaps = 15/270 (5%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+EL +T+ R+  ++ Q +  G+P +PL    +  +  GT+I F+P  + F 
Sbjct: 1   GVSVVNALSEELLLTIRREGKVWEQFYRHGVPQAPLAAVGET-DTSGTQIHFKPSAETFQ 59

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL  ++    
Sbjct: 60  NIH-FSWDILAKRLRELSFLNSGVGIVLRDERTAKE-------ELFKYEGGLSAFVAYLN 111

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++           G     VE A+ W +     I  + N I   +GGTH +G R 
Sbjct: 112 TNKTAVNQVFHFNVQRDDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRS 168

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  IS   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 169 ALTRNLNNYIEQEGLAKKHKISTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 228

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            VE  +   F  +L+++P EA  ++  +I+
Sbjct: 229 AVEQEMGKYFADFLLEHPNEAKAVVGKMID 258


>gi|158252658|gb|ABW23813.1| DNA gyrase [Erwinia billingiae]
          Length = 247

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 67/258 (25%), Positives = 125/258 (48%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  + +Q +  G+P +PL    +  +  GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHNQIYVHGVPQAPLHVTGET-DLTGTRVRFWPSHQTFTNVTDFEYEILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++         ++ +++ GG+K +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIKLEDKRDA-------RQDHYHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH  G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++  +I+ +  R 
Sbjct: 230 TDAKIVVGKIIDAARARE 247


>gi|73666097|gb|AAZ79725.1| gyrase B [Salmonella enterica subsp. enterica serovar Mbandaka]
          Length = 269

 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 90/279 (32%), Positives = 146/279 (52%), Gaps = 14/279 (5%)

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ G
Sbjct: 1   RFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEG 53

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   +
Sbjct: 54  GIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRD 110

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK
Sbjct: 111 GGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTK 170

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT-A 443
            KLVS + +  VE  + +    YL++NP +A  ++  +I+ +  R   R+ RE++R+  A
Sbjct: 171 DKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMSRRKGA 230

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           +    LPGKLADC +     +EL++VEGDSAGGSAKQ R
Sbjct: 231 LDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGR 269


>gi|224496242|gb|ACN52502.1| gyrB [Pantoea stewartii subsp. indologenes]
          Length = 246

 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 69/257 (26%), Positives = 123/257 (47%), Gaps = 14/257 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL       +  GTRI F P    F +   F+   L K  +  +
Sbjct: 1   EGKVHQQIYXHGVPEAPLAVTGDT-DATGTRIRFWPSHDTFTNVTDFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + F++ GG+K +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLEDKRD-------GKNDHFHYEGGIKAFVEYLNKNKTPIHPTVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALXWNDGFQENIYCFTNNIPLRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEER 429
            +A  ++  +I+ +  R
Sbjct: 230 GDAKIVVGKIIDAARAR 246


>gi|326649340|gb|AEA02128.1| DNA gyrase subunit B [Rhizobium borbori]
          Length = 224

 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 73/233 (31%), Positives = 114/233 (48%), Gaps = 12/233 (5%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS  L + + R   +   KF+ G+  +PL    +   + GT +TF+
Sbjct: 1   SGGLHGVGVSVVNALSIWLKLKIRRSGKVHEMKFTHGVADAPLAVTGEYEGRSGTEVTFQ 60

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P P+ F     FD A L    +  A+L+  V+   +  +          ++E  + GGL+
Sbjct: 61  PSPETF-THIEFDYATLEHRLRELAFLNSGVRILLTDKRR-----SEVRQDELLYEGGLE 114

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGT 329
            +++     +  +         EK G    TVE A+ W +   E    + N I   +GGT
Sbjct: 115 AFVRYLDRAKKPLVDAPVAIIGEKDGI---TVEVAMWWNDSYHENVLCFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
           H +G R ALTR I  YA+ +    K  +S+  DD       +LSV + +P+F+
Sbjct: 172 HMAGFRGALTRQITSYADTSGIIKKEKVSLTGDDCREGLTAVLSVKVPDPKFS 224


>gi|37683435|gb|AAQ98791.1| gyrase B [Cardinium endosymbiont of Encarsia pergandiella]
          Length = 308

 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 105/314 (33%), Positives = 160/314 (50%), Gaps = 10/314 (3%)

Query: 173 VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQ 232
           V R   I+ Q++++G+P   +++       RGT + FRPD  IF     ++   ++   Q
Sbjct: 1   VYRNGKIYKQEYAQGVPCYSVKEIG-TTALRGTTVHFRPDSSIFTTTV-YNLHTIINRLQ 58

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             AYL+  +K      +E  E+   P ++ FY  GGL  ++      ++ I       + 
Sbjct: 59  ELAYLNVGLKMQLEDRREQDEQG-NPFQQTFYSEGGLLEFVSHLERTKTSIMPTPILIEG 117

Query: 293 EKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN 351
           EK       V+ A+ +       + SY N I T EGG H +G + ALTR +K YA+ +  
Sbjct: 118 EKNNI---GVQVAMTYNTGYSETVVSYVNNIHTIEGGMHVTGFKRALTRTLKNYADKSGL 174

Query: 352 --KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
             K  I II DD       ++SV + EP+F GQTKTKL + + Q  VE+ + +   +YL 
Sbjct: 175 LEKAKIEIIGDDFREGLTAVISVKVAEPQFEGQTKTKLGNAEVQSAVESCVAEVLHYYLE 234

Query: 410 QNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFI 468
           ++P EA  ++  VI      +  R+ +  V RK  +    LPGKLADCS+      ELF+
Sbjct: 235 EHPKEAKLIVNKVIVAAQARQAARKAREMVQRKNVLMSNSLPGKLADCSERDPTLCELFL 294

Query: 469 VEGDSAGGSAKQAR 482
           VEGDSAGG+AK  R
Sbjct: 295 VEGDSAGGTAKMGR 308


>gi|146189330|emb|CAL91133.1| DNA gyrase subunit beta [Bradyrhizobium japonicum]
 gi|224174500|emb|CAR92668.1| DNA gyrase, B subunit [Bradyrhizobium japonicum]
          Length = 222

 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 115/231 (49%), Gaps = 10/231 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS +L + + R +     +F+ G  ++PL+       +RGT +TF 
Sbjct: 1   SGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHGDAVAPLKVVGDAPGRRGTEVTFL 60

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
             P+ F +   +D A L    +  A+L+  V    S  +   EK      EE ++ GG++
Sbjct: 61  ASPETFKN-IEYDFATLEHRLRELAFLNSGVNIILSDMRHAVEKR-----EEMHYSGGVE 114

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGT 329
            +++    N+  I       + E  G     VE A+ W +   E    + N I   +GGT
Sbjct: 115 EFVKYLDRNKKAIVPAPIMVRAEANGI---GVEAALWWNDSYHENVLCFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFA 380
           H +G R ALTR +  YAE    K  I++  DD       +LSV + +P+F+
Sbjct: 172 HLAGFRGALTRQVNGYAEANAKKEKIALTGDDCREGLTAVLSVKVPDPKFS 222


>gi|291196121|emb|CBG14412.1| DNA gyrase subunit B [Pseudomonas abietaniphila]
          Length = 266

 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 78/269 (28%), Positives = 130/269 (48%), Gaps = 15/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL++TV R   I+ Q +  G+P  P++   +  +  GT I F+P  + F +
Sbjct: 1   VSVVNALSEELNLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDSTGTEIHFKPSAETFKN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++           G     VE A+ W +     +  + N I   +GGTH  G R A
Sbjct: 112 NKTPVNQVFHFNVQRDDGV---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 VEQEMGKYFSDFLLENPNEAKAVVGKMID 257


>gi|92919031|gb|ABE96862.1| DNA gyrase subunit B [Aeromonas allosaccharophila]
          Length = 289

 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 90/301 (29%), Positives = 149/301 (49%), Gaps = 16/301 (5%)

Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234
           R   ++ Q +  G P +PL++        GT + F P P IF D   +    L K  +  
Sbjct: 1   RNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFTDTL-YHYEILAKRLREL 58

Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294
           ++L+  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+
Sbjct: 59  SFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQ 111

Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351
            G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      
Sbjct: 112 DGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSK 168

Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411
           K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++N
Sbjct: 169 KAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLEN 228

Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470
           P +A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVE
Sbjct: 229 PGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVE 288

Query: 471 G 471
           G
Sbjct: 289 G 289


>gi|73666183|gb|AAZ79768.1| gyrase B [Salmonella enterica subsp. indica]
          Length = 269

 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 88/279 (31%), Positives = 140/279 (50%), Gaps = 14/279 (5%)

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ G
Sbjct: 1   RFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEG 53

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   +
Sbjct: 54  GIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRD 110

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK
Sbjct: 111 GGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTK 170

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTA 443
            KLVS + +  VE  + +    YL++NP +A  ++  +I+        RR +    RK A
Sbjct: 171 DKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGA 230

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           +    LPGKLADC +     +EL++VEGDSAGG AKQ R
Sbjct: 231 LDLAGLPGKLADCQERDPALSELYLVEGDSAGGFAKQGR 269


>gi|291196230|emb|CBG14517.1| DNA gyrase subunit B [Pseudomonas plecoglossicida]
          Length = 267

 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 77/269 (28%), Positives = 133/269 (49%), Gaps = 14/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS++L +TV R   I+ Q +  G+P +P+          GT I F+P  + F +
Sbjct: 1   VSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGD-SESTGTHIHFKPSAETFKN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRIRELSFLNSGVGILLKDERSGKE-------EFFKYEGGLRAFVEYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++S++F    +++      VE A+ W +     +  + N I   +GGTH  G R +
Sbjct: 112 NKTPVNSQVFHFNVQRED--GVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSS 169

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 170 LTRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 229

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 230 VEQEMNKYFADFLLENPNEAKAVVGKMID 258


>gi|73666143|gb|AAZ79748.1| gyrase B [Salmonella enterica subsp. enterica serovar Agona]
          Length = 269

 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 89/279 (31%), Positives = 141/279 (50%), Gaps = 14/279 (5%)

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ G
Sbjct: 1   RFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEG 53

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   +
Sbjct: 54  GIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRD 110

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK
Sbjct: 111 GGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAHEGLIAVVSVKVPDPKFSSQTK 170

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTA 443
            KLVS + +  VE  + +    YL++NP +A  ++  +I+        RR +    RK A
Sbjct: 171 DKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGA 230

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           +    LPGKLADC +     +EL++VEGDSAGGSAKQ R
Sbjct: 231 LDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGR 269


>gi|61844885|emb|CAG44515.1| DNA gyrase subunit B [Mycobacterium canettii]
 gi|61844889|emb|CAG44516.1| DNA gyrase subunit B [Mycobacterium canettii]
 gi|61844891|emb|CAG44517.1| DNA gyrase subunit B [Mycobacterium canettii]
 gi|61844893|emb|CAG44518.1| DNA gyrase subunit B [Mycobacterium sp. CIPT 140070001]
 gi|61844895|emb|CAG44519.1| DNA gyrase subunit B [Mycobacterium sp. CIPT 140070002]
 gi|61844899|emb|CAG44520.1| DNA gyrase subunit B [Mycobacterium sp. CIPT 140070003]
 gi|61844901|emb|CAG44521.1| DNA gyrase subunit B [Mycobacterium sp. CIPT 140070005]
 gi|61844907|emb|CAG44523.1| DNA gyrase subunit B [Mycobacterium sp. CIPT 19980863]
          Length = 319

 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 89/324 (27%), Positives = 146/324 (45%), Gaps = 35/324 (10%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS  L V + R    +SQ + +  PL    K+     K G+ + F  DP +F     +
Sbjct: 1   NALSTRLEVEIKRDGYEWSQVYEKSEPLGL--KQGAPTKKTGSTVRFWADPAVFETT-EY 57

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY-------------------------GI 257
           D   + +  Q  A+L+  +    + ++   ++                            
Sbjct: 58  DFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASERAAESTAPHK 117

Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316
            +   F++PGGL  +++     ++ I S I     +  G     VE A+ W       + 
Sbjct: 118 VKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGH---EVEIAMQWNAGYSESVH 174

Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374
           ++ NTI T EGGTHE G R ALT  + KYA+  +    +  ++  DD+      ++SV +
Sbjct: 175 TFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISVKV 234

Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434
            EP+F GQTKTKL + + +  V+    +   H+   NP +A  ++   +  ++ R+  RK
Sbjct: 235 SEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQARIAARK 294

Query: 435 QRE-VNRKTAIRKLRLPGKLADCS 457
            RE V RK+A     LPGKLADC 
Sbjct: 295 ARELVRRKSATDIGGLPGKLADCR 318


>gi|73666137|gb|AAZ79745.1| gyrase B [Salmonella enterica subsp. enterica serovar Bredeney]
          Length = 269

 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 89/279 (31%), Positives = 141/279 (50%), Gaps = 14/279 (5%)

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ G
Sbjct: 1   RFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEG 53

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   +
Sbjct: 54  GIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRD 110

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK
Sbjct: 111 GGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVRVPDPKFSSQTK 170

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTA 443
            KLVS + +  VE  + +    YL++NP +A  ++  +I+        RR +    RK A
Sbjct: 171 DKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGA 230

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           +    LPGKLADC +     +EL++VEGDSAGGSAKQ R
Sbjct: 231 LDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGR 269


>gi|167995615|gb|ACA13643.1| GyrB [Thalassospira sp. MCCC 1A02450]
          Length = 306

 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 97/315 (30%), Positives = 152/315 (48%), Gaps = 19/315 (6%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------RNKRGTRITFRPDPKIFG 217
           ALS  L + + R       +FS G  + PLE               GT +TF PD +IF 
Sbjct: 1   ALSTLLKLRIWRNGKEHYMEFSGGDAIKPLEVVGDAPLTEDGTPLSGTEVTFYPDKEIFT 60

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F+ + L    +  A+L+  V      ++        P + + ++ GG++ +++   
Sbjct: 61  QT-EFNLSTLEHRLRELAFLNSGVILTLRDERSG-----EPTEIKLHYEGGIRAFVEYLD 114

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            +++    E  + + EK G    TVE A+ W +        + N I   +GGTH +G R 
Sbjct: 115 RSKARQIEECISIEGEKDGI---TVELALQWNDSYHETTLCFTNNIPQRDGGTHMAGFRA 171

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA+ +    K  +S+  DD       ++SV + +P+F+ QTK KLVS + + 
Sbjct: 172 ALTRQINNYAQESGIAKKEKVSLSGDDAREGLTCVISVKVPDPKFSSQTKDKLVSSEVRP 231

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            VEN + D    +L ++P +A K++  V+E +  R   RK RE   RK A+    LPGKL
Sbjct: 232 VVENVVNDKLSQWLEEHPQDARKIVTKVVEAASAREAARKARELTRRKGALDISSLPGKL 291

Query: 454 ADCSQNIAHGTELFI 468
           ADC +  A   ELFI
Sbjct: 292 ADCQERDASKAELFI 306


>gi|222831890|gb|EEE70367.1| predicted protein [Populus trichocarpa]
          Length = 252

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 8/104 (7%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           +++G +          ++ +E   K  +  + I R+KGLGEM + QL ET MD NKRT+L
Sbjct: 156 VSRGERQQSVSS---FEQAIEWLTKESRRGLIIQRYKGLGEMNSDQLFETTMDPNKRTML 212

Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685
           +V I   +            LMG + + R +FI+  A    ++ 
Sbjct: 213 KVSIKDAV----AADQLFTTLMGDEVEPRREFIEMNALRA-NLD 251


>gi|315936454|gb|ADU55855.1| DNA gyrase [Erwinia tasmaniensis]
          Length = 247

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 65/258 (25%), Positives = 123/258 (47%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P + L    +  +  GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVVEFEYEILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + +++ GG+K +++   +N++ I    F   TEK 
Sbjct: 60  FLNSGVSIKLEDKRD-------GKTDHYHYEGGIKAFVEYLNKNKTPIHPNAFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL+++P
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLEHP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++  +I+ +  R 
Sbjct: 230 GDAKIVVGKIIDAARARE 247


>gi|291196203|emb|CBG14495.1| DNA gyrase subunit B [Pseudomonas mosselii]
          Length = 267

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 77/269 (28%), Positives = 133/269 (49%), Gaps = 14/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS++L +TV R   I+ Q +  G+P +P+    +     GT I F+P  + F +
Sbjct: 1   VSVVNALSEQLVLTVRRSGKIWEQTYVHGVPQAPMAVVGE-SETTGTHIHFKPSAETFKN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRIRELSFLNSGVGILLKDERSGKE-------EFFKYEGGLRAFVEYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++S++F    ++       VE A+ W +     +  + N I   +GGTH  G R +
Sbjct: 112 NKTPVNSQVFHFNVQRDD--GVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSS 169

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 170 LTRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 229

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 230 VEQEMNKYFADFLLENPNEAKAVVGKMID 258


>gi|297822377|ref|XP_002879071.1| hypothetical protein ARALYDRAFT_901604 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297324910|gb|EFH55330.1| hypothetical protein ARALYDRAFT_901604 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 538

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 62/442 (14%), Positives = 136/442 (30%), Gaps = 40/442 (9%)

Query: 56  EPVRMRPGMYIGG---------------------TDEKALHHLFSEVIDNAMDEVIAGY- 93
           E + + P  YIG                      T    L+ +F E++ NA D       
Sbjct: 31  EHILLCPDSYIGSIEKHTQTLWVYEKEEMVCRSVTYVPGLYKIFDEILVNAADNKRRDPS 90

Query: 94  ANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152
            + ++V +D     ++V ++G G+P+E            I          +D +    +G
Sbjct: 91  MDSVKVVIDVEKNQISVCNSGDGVPLE-----EGVYVPGIFFGPWL-SRNYDYNVKNTTG 144

Query: 153 GLHGVGISVVNALSDELHVTVARQN---TIFSQKFSRGIPLSPLEKKEKV-RNKRGTRIT 208
           G +G G ++ N  S E  + +A        + + F   +         K  +++  T++T
Sbjct: 145 GRNGFGATLTNIFSTEFIIEIADGKRSLKKYKRVFENNMGNKSKLFITKCNKSENWTKVT 204

Query: 209 FRPDPKIFGDK--AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           F+PD K F          A + K     A   G+       +K +  K      + +   
Sbjct: 205 FKPDLKKFNMTELENDVVALMSKRVFDIAGCLGQTVKVELNEKRVPIKSFSDYVDLYLSA 264

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDE 326
              K+  +        ++       +   G  +           +N +   +       +
Sbjct: 265 -ASKSRTEPLPRMNEKVNDRWEVCVSLSDGQFQQKK--YPNVKTDNVKNHLWVFVNALID 321

Query: 327 GGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
               +S  +  LT     +    +  +AI                 +++  E       K
Sbjct: 322 NPAFDSQTKERLTLPESSFGSKCELSKAILKKGLVEHFLFSWKT--WVQNEELKISDGAK 379

Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446
             +++ +  ++       +     +   +      +    +++    K +E+  K    +
Sbjct: 380 TETVEVEELMDAEKAGGKESEPGTHIFPSMVDDLTLEYYEKKKETMLKNQEIMLKNLELE 439

Query: 447 LRLPGKLADCSQNIAHGTELFI 468
           L    K  D        TE+  
Sbjct: 440 LLKLEKADDQKLREKWFTEILE 461


>gi|297595840|gb|ADI48229.1| DNA gyrase B [Erwinia sp. DAPP-PG 672]
          Length = 284

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 80/295 (27%), Positives = 140/295 (47%), Gaps = 15/295 (5%)

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
            R+  +  Q +  G+P +PL    +  +  GTR+ F P  + F +   F+   L K  + 
Sbjct: 1   RRERKVHQQIYVHGVPQAPLSVTGET-DITGTRVRFWPSHETFTNVTDFEYEILAKRLRE 59

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            ++L+  V       ++        + + +++ GG+K +++   +N++ I   +F   TE
Sbjct: 60  LSFLNSGVSIKLEDKRD-------GKNDHYHYEGGIKAFVEYLNKNKTPIHPNVFYFSTE 112

Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350
           K G     VE A+ W +     I  + N I   +GGTH  G R A+TR +  Y +     
Sbjct: 113 KDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNAYMDKEGYS 169

Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410
            K  +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++
Sbjct: 170 KKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLE 229

Query: 411 NPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGT 464
           NP +A  ++  +I+        RR +    RK A+    LPGKLADC +     +
Sbjct: 230 NPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPAMS 284


>gi|76786500|gb|ABA54994.1| DNA gyrase B subunit [Pseudomonas plecoglossicida]
          Length = 241

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 72/252 (28%), Positives = 121/252 (48%), Gaps = 14/252 (5%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS++L +TV R   I+ Q +  G+P +P+          GT I F+P  +
Sbjct: 1   HGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGD-SESTGTHIHFKPSAE 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
              +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++
Sbjct: 60  TVKNIH-FSWDILAKRIRELSFLNSGVGILLKDERSGKE-------EFFKYEGGLRAFVE 111

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
                ++ ++S++F    +++      VE A+ W +     +  + N I   +GGTH  G
Sbjct: 112 YLNTKKTPVNSQVFHFNVQRED--GVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVG 169

Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R +LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS +
Sbjct: 170 FRSSLTRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSE 229

Query: 392 AQRTVENALRDP 403
            +  VE  +   
Sbjct: 230 VKTAVEQEMNKY 241


>gi|298112111|gb|ADI58440.1| DNA gyrase subunit B [Pseudomonas viridiflava]
          Length = 213

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 65/216 (30%), Positives = 105/216 (48%), Gaps = 13/216 (6%)

Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201
           KFD+++Y++SGGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +
Sbjct: 1   KFDDNSYKVSGGLHGVGVSVVNALSEILLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SD 59

Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261
             GT+I F+P    F +   F    L K  +  ++L+  V      ++   E       E
Sbjct: 60  TTGTQIHFKPSADTFKNIH-FSWDILAKRIRELSFLNSGVGIMLKDERSGKE-------E 111

Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320
            F + GGL+ +++    N++ ++           G     VE A+ W +     +  + N
Sbjct: 112 LFKYEGGLRAFVEYLNTNKTPVNEVFHFNVQRDDGV---GVEIALQWNDSFNENLLCFTN 168

Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
            I   +GGTH  G R ALTR +  Y E     +   
Sbjct: 169 NIPQRDGGTHLVGFRFALTRNLNNYIEQEGLAKKHK 204


>gi|73666013|gb|AAZ79683.1| gyrase B [Salmonella enterica subsp. diarizonae]
 gi|73666015|gb|AAZ79684.1| gyrase B [Salmonella enterica subsp. arizonae]
 gi|73666017|gb|AAZ79685.1| gyrase B [Salmonella enterica subsp. salamae]
 gi|73666019|gb|AAZ79686.1| gyrase B [Salmonella enterica subsp. enterica serovar Newport]
 gi|73666021|gb|AAZ79687.1| gyrase B [Salmonella enterica subsp. enterica serovar Newport]
 gi|73666023|gb|AAZ79688.1| gyrase B [Salmonella enterica subsp. enterica serovar Bredeney]
 gi|73666025|gb|AAZ79689.1| gyrase B [Salmonella enterica subsp. enterica serovar Bredeney]
 gi|73666027|gb|AAZ79690.1| gyrase B [Salmonella enterica subsp. enterica serovar Derby]
 gi|73666029|gb|AAZ79691.1| gyrase B [Salmonella enterica subsp. enterica serovar Derby]
 gi|73666031|gb|AAZ79692.1| gyrase B [Salmonella enterica subsp. enterica serovar Manhattan]
 gi|73666033|gb|AAZ79693.1| gyrase B [Salmonella enterica subsp. enterica serovar Manhattan]
 gi|73666035|gb|AAZ79694.1| gyrase B [Salmonella enterica subsp. enterica serovar Newport]
 gi|73666037|gb|AAZ79695.1| gyrase B [Salmonella enterica subsp. enterica serovar Brandenburg]
 gi|73666039|gb|AAZ79696.1| gyrase B [Salmonella enterica subsp. enterica serovar Brandenburg]
 gi|73666041|gb|AAZ79697.1| gyrase B [Salmonella enterica subsp. enterica serovar Brandenburg]
 gi|73666043|gb|AAZ79698.1| gyrase B [Salmonella enterica subsp. enterica serovar Bredeney]
 gi|73666045|gb|AAZ79699.1| gyrase B [Salmonella enterica subsp. enterica serovar Newport]
 gi|73666047|gb|AAZ79700.1| gyrase B [Salmonella enterica subsp. enterica serovar Derby]
 gi|73666049|gb|AAZ79701.1| gyrase B [Salmonella enterica subsp. enterica serovar Derby]
 gi|73666051|gb|AAZ79702.1| gyrase B [Salmonella enterica subsp. enterica serovar Virchow]
 gi|73666053|gb|AAZ79703.1| gyrase B [Salmonella enterica subsp. enterica serovar Virchow]
 gi|73666055|gb|AAZ79704.1| gyrase B [Salmonella enterica subsp. enterica serovar Virchow]
 gi|73666057|gb|AAZ79705.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|73666059|gb|AAZ79706.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|73666061|gb|AAZ79707.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|73666063|gb|AAZ79708.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|73666065|gb|AAZ79709.1| gyrase B [Salmonella enterica subsp. enterica serovar Agona]
 gi|73666067|gb|AAZ79710.1| gyrase B [Salmonella enterica subsp. enterica serovar Braenderup]
 gi|73666071|gb|AAZ79712.1| gyrase B [Salmonella enterica subsp. enterica serovar Dublin]
 gi|73666073|gb|AAZ79713.1| gyrase B [Salmonella enterica subsp. enterica serovar
           Schwarzengrund]
 gi|73666075|gb|AAZ79714.1| gyrase B [Salmonella enterica subsp. enterica serovar Livingstone]
 gi|73666081|gb|AAZ79717.1| gyrase B [Salmonella enterica subsp. enterica serovar Infantis]
 gi|73666083|gb|AAZ79718.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|73666085|gb|AAZ79719.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|73666087|gb|AAZ79720.1| gyrase B [Salmonella enterica subsp. enterica serovar Thompson]
 gi|73666089|gb|AAZ79721.1| gyrase B [Salmonella enterica subsp. enterica serovar
           Schwarzengrund]
 gi|73666091|gb|AAZ79722.1| gyrase B [Salmonella enterica subsp. enterica serovar Livingstone]
 gi|73666093|gb|AAZ79723.1| gyrase B [Salmonella enterica subsp. enterica serovar Anatum]
 gi|73666095|gb|AAZ79724.1| gyrase B [Salmonella enterica subsp. enterica serovar London]
 gi|73666099|gb|AAZ79726.1| gyrase B [Salmonella enterica subsp. enterica serovar Heidelberg]
 gi|73666101|gb|AAZ79727.1| gyrase B [Salmonella enterica subsp. enterica serovar Thompson]
 gi|73666103|gb|AAZ79728.1| gyrase B [Salmonella enterica subsp. enterica serovar Agona]
 gi|73666105|gb|AAZ79729.1| gyrase B [Salmonella enterica subsp. enterica serovar Oranienburg]
 gi|73666107|gb|AAZ79730.1| gyrase B [Salmonella enterica subsp. enterica serovar Oranienburg]
 gi|73666109|gb|AAZ79731.1| gyrase B [Salmonella enterica subsp. enterica serovar Cerro]
 gi|73666111|gb|AAZ79732.1| gyrase B [Salmonella enterica subsp. enterica serovar Cerro]
 gi|73666113|gb|AAZ79733.1| gyrase B [Salmonella enterica subsp. enterica serovar Dublin]
 gi|73666115|gb|AAZ79734.1| gyrase B [Salmonella enterica subsp. enterica serovar Heidelberg]
 gi|73666117|gb|AAZ79735.1| gyrase B [Salmonella enterica subsp. enterica serovar Infantis]
 gi|73666119|gb|AAZ79736.1| gyrase B [Salmonella enterica subsp. enterica serovar Infantis]
 gi|73666121|gb|AAZ79737.1| gyrase B [Salmonella enterica subsp. enterica serovar Livingstone]
 gi|73666123|gb|AAZ79738.1| gyrase B [Salmonella enterica subsp. enterica serovar Montevideo]
 gi|73666125|gb|AAZ79739.1| gyrase B [Salmonella enterica subsp. enterica serovar Montevideo]
 gi|73666127|gb|AAZ79740.1| gyrase B [Salmonella enterica subsp. enterica serovar
           Schwarzengrund]
 gi|73666129|gb|AAZ79741.1| gyrase B [Salmonella enterica subsp. enterica serovar
           Schwarzengrund]
 gi|73666131|gb|AAZ79742.1| gyrase B [Salmonella enterica subsp. enterica serovar Thompson]
 gi|73666133|gb|AAZ79743.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|73666135|gb|AAZ79744.1| gyrase B [Salmonella enterica subsp. enterica serovar Mbandaka]
 gi|73666141|gb|AAZ79747.1| gyrase B [Salmonella enterica subsp. enterica serovar Dublin]
 gi|73666145|gb|AAZ79749.1| gyrase B [Salmonella enterica subsp. enterica serovar Braenderup]
 gi|73666151|gb|AAZ79752.1| gyrase B [Salmonella enterica subsp. enterica serovar Dublin]
 gi|73666153|gb|AAZ79753.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|73666155|gb|AAZ79754.1| gyrase B [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|73666161|gb|AAZ79757.1| gyrase B [Salmonella enterica subsp. enterica serovar Oranienburg]
 gi|73666163|gb|AAZ79758.1| gyrase B [Salmonella enterica subsp. enterica serovar Thompson]
 gi|73666165|gb|AAZ79759.1| gyrase B [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|73666167|gb|AAZ79760.1| gyrase B [Salmonella enterica subsp. salamae]
 gi|73666169|gb|AAZ79761.1| gyrase B [Salmonella enterica subsp. arizonae]
 gi|73666171|gb|AAZ79762.1| gyrase B [Salmonella enterica subsp. arizonae]
 gi|73666173|gb|AAZ79763.1| gyrase B [Salmonella enterica subsp. diarizonae]
 gi|73666175|gb|AAZ79764.1| gyrase B [Salmonella enterica subsp. diarizonae]
 gi|73666177|gb|AAZ79765.1| gyrase B [Salmonella enterica subsp. houtenae]
 gi|73666179|gb|AAZ79766.1| gyrase B [Salmonella enterica subsp. houtenae]
 gi|73666181|gb|AAZ79767.1| gyrase B [Salmonella enterica subsp. indica]
 gi|84380938|gb|AAZ79711.1| gyrase B [Salmonella enterica subsp. enterica serovar Mbandaka]
 gi|84380940|gb|AAZ79715.1| gyrase B [Salmonella enterica subsp. enterica serovar Anatum]
          Length = 269

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 89/279 (31%), Positives = 141/279 (50%), Gaps = 14/279 (5%)

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ G
Sbjct: 1   RFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEG 53

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   +
Sbjct: 54  GIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRD 110

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK
Sbjct: 111 GGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTK 170

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTA 443
            KLVS + +  VE  + +    YL++NP +A  ++  +I+        RR +    RK A
Sbjct: 171 DKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGA 230

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           +    LPGKLADC +     +EL++VEGDSAGGSAKQ R
Sbjct: 231 LDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGR 269


>gi|73666159|gb|AAZ79756.1| gyrase B [Salmonella enterica subsp. enterica serovar Oranienburg]
          Length = 269

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 90/279 (32%), Positives = 141/279 (50%), Gaps = 14/279 (5%)

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ G
Sbjct: 1   RFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEG 53

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K +++   +N++ I   IF   TEK GT    VE A+ W +     I  + N I   +
Sbjct: 54  GIKAFVEYLNKNKTPIHPNIFYFSTEKDGT---GVEVALQWNDGFQENIYCFTNNIPQRD 110

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK
Sbjct: 111 GGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTK 170

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTA 443
            KLVS + +  VE  + +    YL++NP +A  ++  +I+        RR +    RK A
Sbjct: 171 DKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGA 230

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           +    LPGKLADC +     +EL +VEGDSAGGSAKQ R
Sbjct: 231 LDLAGLPGKLADCQERDPALSELCLVEGDSAGGSAKQGR 269


>gi|217030911|gb|ACJ74056.1| DNA gyrase [Erwinia psidii]
 gi|295639553|gb|ADG21991.1| DNA gyrase [Erwinia psidii]
 gi|295639555|gb|ADG21992.1| DNA gyrase [Erwinia psidii]
 gi|295639557|gb|ADG21993.1| DNA gyrase [Erwinia psidii]
 gi|295639559|gb|ADG21994.1| DNA gyrase [Erwinia psidii]
 gi|295639561|gb|ADG21995.1| DNA gyrase [Erwinia psidii]
 gi|295639563|gb|ADG21996.1| DNA gyrase [Erwinia psidii]
 gi|315936450|gb|ADU55853.1| DNA gyrase [Erwinia psidii]
 gi|315936452|gb|ADU55854.1| DNA gyrase [Erwinia psidii]
          Length = 247

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 68/258 (26%), Positives = 124/258 (48%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL    +  +  GTR+ F P    F +   F+   L K  +  +
Sbjct: 1   EGKVHQQIYVHGVPQAPLSVTGET-DLTGTRVRFWPSHATFTNVTDFEYEILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        +K+ +++ GG+K +++    N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIKLEDKRD-------DKKDHYHYEGGIKAFVEYLNRNKTPIHPNVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++  +I+ +  R 
Sbjct: 230 GDAKTVVGKIIDAARARE 247


>gi|224496340|gb|ACN52551.1| gyrB [Pantoea oleae]
          Length = 246

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 66/256 (25%), Positives = 123/256 (48%), Gaps = 14/256 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL    +  +  GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHQQIYVHGVPQAPLSVTGET-DITGTRVRFWPSHETFTNVTDFEYEILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + +++ GG+K +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIKLEDKRD-------GKNDHYHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH  G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEE 428
            +A  ++  +I+ +  
Sbjct: 230 SDAKIVVGKIIDAARA 245


>gi|73666185|gb|AAZ79769.1| gyrase B [Salmonella bongori]
          Length = 269

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 89/279 (31%), Positives = 141/279 (50%), Gaps = 14/279 (5%)

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ G
Sbjct: 1   RFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEG 53

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   +
Sbjct: 54  GIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRD 110

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK
Sbjct: 111 GGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTK 170

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTA 443
            KLVS + +  VE  + +    YL++NP +A  ++  +I+        RR +    RK A
Sbjct: 171 DKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGA 230

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           +    LPGKLADC +     +EL++VEGDSAGGSAKQ R
Sbjct: 231 LDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGR 269


>gi|224496240|gb|ACN52501.1| gyrB [Pantoea ananatis]
          Length = 246

 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 68/257 (26%), Positives = 122/257 (47%), Gaps = 14/257 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL       +  GTRI F P    F +   F+   L K  +  +
Sbjct: 1   EGKVHQQIYLHGVPEAPLAVTGDT-DATGTRIRFWPSHDTFTNVTDFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++          + F++ GG++ +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLEDKRDA-------RNDHFHYEGGIRAFVEYLNKNKTPIHPTVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKHKLVSSEVKSAVEQQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEER 429
            +A  ++  +I+ +  R
Sbjct: 230 GDAKIVVGKIIDAAXAR 246


>gi|33087741|gb|AAP93001.1| DNA gyrase subunit B [Yersinia kristensenii]
          Length = 183

 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 56/194 (28%), Positives = 97/194 (50%), Gaps = 12/194 (6%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS++L + + R+  +  Q +  G+P +PL+   +  ++ GT + F P
Sbjct: 1   GGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DQTGTTVRFWP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V       +   E       + F++ GG++ 
Sbjct: 60  SFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDKRNDRE-------DHFHYEGGIRA 112

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++   +N++ I  ++F   T K       VE A+ W +     I  + N I   +GGTH
Sbjct: 113 FVEYLSKNKNPIHPKVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTH 169

Query: 331 ESGLRVALTRGIKK 344
             G R A+TR +  
Sbjct: 170 LVGFRTAMTRTLNS 183


>gi|52546286|dbj|BAD51526.1| DNA gyrase subunit B [Burkholderia andropogonis]
 gi|52546288|dbj|BAD51527.1| DNA gyrase subunit B [Burkholderia andropogonis]
 gi|52546290|dbj|BAD51528.1| DNA gyrase subunit B [Burkholderia andropogonis]
          Length = 267

 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 82/276 (29%), Positives = 126/276 (45%), Gaps = 25/276 (9%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK-----------VR 200
           GGLHGVG+S VNALS  L +TV R       +F+RG+ ++   +                
Sbjct: 1   GGLHGVGVSCVNALSKWLRLTVRRDGKKHFLEFNRGVVINRTLETRDGVEVSPIPVVGDA 60

Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260
              GT + F  D  IFG+   F    L K  +  ++L+  V+      +   E       
Sbjct: 61  EHNGTEVHFMADEDIFGN-VDFHYDILSKRIRELSFLNNGVRIRLQDKRSGKEDD----- 114

Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319
             + F GG+K +++     + ++   IF    EK      TVE ++ W +     +  + 
Sbjct: 115 --YAFAGGVKGFVEYINRAKQVLHPTIFHAVGEKDNV---TVEVSMQWNDSFNENVLCFT 169

Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377
           N I   +GGTH +GLR A+TR + KY   T    K  I    DD+      +LSV + EP
Sbjct: 170 NNIPQRDGGTHLTGLRAAMTRVLNKYIVETDAAKKAKIETSGDDMREGLSCVLSVKVPEP 229

Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413
           +F+ QTK KLVS + +  VE  +    + YL++ P 
Sbjct: 230 KFSSQTKDKLVSSEVRAPVEEVVAKALEDYLLETPN 265


>gi|7340783|emb|CAB83043.1| DNA gyrase subunit B [Mycobacterium caprae]
          Length = 314

 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 79/311 (25%), Positives = 139/311 (44%), Gaps = 34/311 (10%)

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  L V + R    +SQ + +  PL    K+     K G+ + F  DP +F    
Sbjct: 1   VVNALSTRLEVEIKRDGYEWSQVYEKSEPLGL--KQGAPTKKTGSTVRFWADPAVFETT- 57

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY------------------------- 255
            +D   + +  Q  A+L+  +    + ++   ++                          
Sbjct: 58  EYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASERAAESTAP 117

Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PE 314
              +   F++PGGL  +++     ++ I S I     +  G     VE A+ W       
Sbjct: 118 HKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGH---EVEIAMQWNAGYSES 174

Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSV 372
           + ++ NTI T EGGTHE G R ALT  + KYA+  +    +  ++  DD+      ++SV
Sbjct: 175 VHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISV 234

Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432
            + EP+F GQTKTKL + + +  V+    +   H+   NP ++  ++   +  ++ R+  
Sbjct: 235 KVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDSKVVVNKAVSSAQARIAA 294

Query: 433 RKQREVNRKTA 443
           RK RE+ R+ +
Sbjct: 295 RKARELVRRKS 305


>gi|164456695|dbj|BAF97840.1| gyrase B subunit [Vibrio mimicus]
          Length = 254

 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 68/264 (25%), Positives = 127/264 (48%), Gaps = 13/264 (4%)

Query: 168 ELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARL 227
           ++ +T+ R   I +Q +  G+P +PL    +   + GT + F P  + F +   F    L
Sbjct: 1   KVLLTIYRGGKIHTQTYHHGVPQAPLSVVGET-ERTGTTVRFWPSAQTFTNI-EFHYDIL 58

Query: 228 LKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEI 287
            K  +  ++L+  V    + ++E  +K      + F + GG++ ++     N++ I  ++
Sbjct: 59  AKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEGGIQAFVTHLNRNKTPIHEKV 112

Query: 288 FTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYA 346
           F    E++     +VE A+ W +     I  + N I   +GGTH +G R ALTR +  Y 
Sbjct: 113 FHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYM 170

Query: 347 ELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF 404
           +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE+A+ +  
Sbjct: 171 DKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKL 230

Query: 405 DHYLVQNPIEATKLLEWVIERSEE 428
             +L +NP EA  +   +I+ +  
Sbjct: 231 ADFLAENPSEAKNVCSKIIDAARA 254


>gi|167995577|gb|ACA13624.1| GyrB [Thalassospira sp. MCCC 1A01288]
 gi|167995581|gb|ACA13626.1| GyrB [Thalassospira sp. MCCC 1A01318]
 gi|167995585|gb|ACA13628.1| GyrB [Thalassospira sp. MCCC 1A01423]
 gi|167995589|gb|ACA13630.1| GyrB [Thalassospira sp. MCCC 1A01449]
          Length = 306

 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 98/315 (31%), Positives = 152/315 (48%), Gaps = 19/315 (6%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK------RGTRITFRPDPKIFG 217
           ALS  L + + R       +FS G  + PLE               GT +TF PD +IF 
Sbjct: 1   ALSTLLKLRIWRNGKEHYMEFSGGDAVKPLEVVGDAPIMEDGKPLTGTEVTFYPDAEIFT 60

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F  + L    +  A+L+  V      ++        P + + ++ GG++ +++   
Sbjct: 61  NT-EFSLSTLEHRLRELAFLNSGVFLSLRDERSS-----EPTEIKLHYEGGIRAFVEYLD 114

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            +++    E  + + EK G    TVE A+ W +        + N I   +GGTH +G R 
Sbjct: 115 RSKTRQIEEPISIEGEKDGI---TVEVALQWNDSYHETTLCFTNNIPQRDGGTHMAGFRA 171

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA+ +    K  +S+  DD       ++SV + +P+F+ QTK KLVS + + 
Sbjct: 172 ALTRQINHYAQESGIAKKEKVSLSGDDAREGLTCVISVKVPDPKFSSQTKDKLVSSEVRP 231

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            VEN L D    +L ++P +A K++  V+E +  R   RK RE   RK A+    LPGKL
Sbjct: 232 VVENILNDKLSQWLEEHPQDARKIVGKVVEAATAREAARKARELTRRKGALDISSLPGKL 291

Query: 454 ADCSQNIAHGTELFI 468
           ADC +  A   ELFI
Sbjct: 292 ADCQERDASKAELFI 306


>gi|323652536|gb|ADX98519.1| gyrase B [Burkholderia stabilis]
          Length = 196

 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 66/207 (31%), Positives = 98/207 (47%), Gaps = 25/207 (12%)

Query: 116 IPVE--NHPKFP-NKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVT 172
           IP +   + K    +S  EI++T LHAGGKFD ++Y++SGGLHGVG+S VNALS  L +T
Sbjct: 1   IPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQNSYKVSGGLHGVGVSCVNALSSWLRLT 60

Query: 173 VARQNTIFSQKFSRGIPLSPLEKK-----------EKVRNKRGTRITFRPDPKIFGDKAG 221
           V R       +F RGI    + +                  RGT + F  DP IFG    
Sbjct: 61  VRRGGKKRFMEFHRGIAQDRVLEMVDGVEVSPMLVTGDTENRGTEVHFMADPTIFGT-VE 119

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           +    L K  +  ++L+  V+   +  +   E         F F GG+K +++   + ++
Sbjct: 120 YHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD-------FAFAGGVKGFVEYINKTKT 172

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAW 308
            +   IF    EK G     VE A+ W
Sbjct: 173 NLHPTIFFATGEKDGV---GVEVAMQW 196


>gi|158252574|gb|ABW23771.1| DNA gyrase [Pantoea anthophila]
          Length = 247

 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 68/258 (26%), Positives = 123/258 (47%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P SPL       +  GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHQQIYVHGVPESPLTVTGDT-DLTGTRVRFWPSYETFTNVRDFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + F++ GG+K +++   +N++ I   +F    EK 
Sbjct: 60  FLNSGVSIRLEDKRD-------GKTDHFHYEGGIKAFVEYLNKNKTPIHPTVFYFSNEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + EP+F+ QTK KLVS   +  V++ + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPEPKFSSQTKDKLVSSKVKSAVDHQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++  +I+ +  R 
Sbjct: 230 ADAKIVVGKIIDAARARE 247


>gi|209420596|gb|ACI47061.1| gyrase B [Mycobacterium tuberculosis]
          Length = 303

 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 90/306 (29%), Positives = 142/306 (46%), Gaps = 32/306 (10%)

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK--------------------- 254
             +   +D   + +  Q  A+L+  +    + ++   E+                     
Sbjct: 1   IFETTEYDFETVARRLQEMAFLNKGLTINLTDERVSNEEVVDEVVSDTADAPKSAQEKAA 60

Query: 255 ----YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310
                   +   F++PGGL  +++     +S I   I     +  G     VE A+ W  
Sbjct: 61  ESTAPHKVKHRTFHYPGGLVDFVKHINRTKSPIQQSIIDFDGKGPGH---EVEIAMQWNG 117

Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMISAV 367
                + ++ NTI T EGGTHE G R ALT  + KY   +     +  ++  DD+     
Sbjct: 118 GYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLTGDDIREGLA 177

Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
            ++SV + EP+F GQTKTKL + + +  V+    +   H+   NP +A  ++   +  ++
Sbjct: 178 AVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPADAKVVVNKAVSSAQ 237

Query: 428 ERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486
            R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGGSAK  R+   
Sbjct: 238 ARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMF 297

Query: 487 QAVLPL 492
           QA+LPL
Sbjct: 298 QAILPL 303


>gi|291196242|emb|CBG14528.1| DNA gyrase subunit B [Pseudomonas rhizosphaerae]
          Length = 266

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 77/269 (28%), Positives = 128/269 (47%), Gaps = 15/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+ L +TV R   ++ Q +  G+P  P++   +     GT+I F+P  + F +
Sbjct: 1   VSVVNALSEGLQLTVRRAGKLWEQFYVHGVPQEPMKIVGE-SETTGTKIHFKPSAETFKN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRIRELSFLNSGVGILLKDERSGKE-------ELFKYEGGLRAFVEYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++           G     VE A+ W +     +  + N I   +GGTH  G R A
Sbjct: 112 NKTPVNQIFHFNVQRDDGV---GVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  +S   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRNLNNYIEQEGLAKKNKVSTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 VEQEMGKYFSDFLLENPNEAKAVVGKMID 257


>gi|164456655|dbj|BAF97820.1| gyrase B subunit [Vibrio coralliilyticus]
          Length = 257

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 71/267 (26%), Positives = 129/267 (48%), Gaps = 13/267 (4%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS ++ +T+ R   I +Q +  G P +PL    +  +K GT I F P  + F +   F
Sbjct: 1   NALSKQVTLTIHRGGQIHTQTYHHGEPQAPLSVIGET-DKTGTEIRFWPSEETFSN-TEF 58

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  ++L+  V      ++E        + + F + GG++ +++    N++ 
Sbjct: 59  HYDILAKRLRELSFLNSGVSIKLVDERE------EDKSDHFMYEGGIQAFVEHLNTNKTP 112

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           I  ++F    E++      VE A+ W +     I  + N I   +GGTH +G R ALTR 
Sbjct: 113 IIEKVFHFNAERED--GIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRT 170

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE+ 
Sbjct: 171 LNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVESV 230

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERS 426
           + +    +LV++P EA  +   +I+ +
Sbjct: 231 MGEKLSEFLVEHPTEAKAVCSKIIDAA 257


>gi|291196147|emb|CBG14438.1| DNA gyrase subunit B [Pseudomonas congelans]
          Length = 266

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 77/269 (28%), Positives = 129/269 (47%), Gaps = 15/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+I F+P  + F +
Sbjct: 1   VSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDSTGTQIHFKPSAETFKN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++           G     VE A+ W +     +  + N I   +GGTH  G R A
Sbjct: 112 NKTPVNEVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 VEQEMGKYFSDFLLENPNEAKAVVGKMID 257


>gi|224174540|emb|CAR92688.1| DNA gyrase, B subunit [Bradyrhizobium sp. LMG 15245]
 gi|224174542|emb|CAR92689.1| DNA gyrase, B subunit [Bradyrhizobium sp. LMG 15253]
          Length = 222

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 115/231 (49%), Gaps = 10/231 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS +L + + R +     +F+ G  ++PL+       KRGT +TF 
Sbjct: 1   SGGLHGVGVSVVNALSSKLALRIWRDDKEHYIEFAHGDAVAPLKVVGDAPGKRGTEVTFL 60

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
              + F +   +D A L    +  A+L+  V    S  +   EK      EE ++ GG++
Sbjct: 61  ASTETFKN-IEYDFATLEHRLRELAFLNSGVHIVLSDMRHAVEKR-----EEMHYSGGVE 114

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGT 329
            +++    N+  I       ++E  G     VE A+ W +   E    + N I   +GGT
Sbjct: 115 EFVKYLDRNKKAIVPTPIMVRSEANGI---GVEAALWWNDSYHENVLCFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFA 380
           H +G R ALTR +  YAE    K  I++  DD       +LSV + +P+F+
Sbjct: 172 HLAGFRGALTRQVNGYAEANAKKEKIALTGDDCREGLTAVLSVKVPDPKFS 222


>gi|50871666|emb|CAG15375.1| DNA gyrase subunit B [Pseudomonas aeruginosa]
          Length = 284

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 79/271 (29%), Positives = 134/271 (49%), Gaps = 16/271 (5%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS EL +T+ R N ++ Q +  G+P  PL +  +  +  GT + F+P P+ F 
Sbjct: 1   GVSVVNALSHELRLTIRRHNKVWEQVYHHGVPQFPLREVGET-DGSGTEVHFKPSPETFS 59

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++         ++E F + GGLK +++   
Sbjct: 60  NIH-FSWDILAKRIRELSFLNSGVGILLRDER-------TGKEELFKYEGGLKAFVEYLN 111

Query: 278 ENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            N++ ++       + E+ G     VE A+ W +     +  + N I   +GGTH +G R
Sbjct: 112 TNKTAVNEVFHFNVQREEDGV---GVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFR 168

Query: 336 VALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR +  Y E     +        DD       I+SV + +P+F+ QTK KLVS + +
Sbjct: 169 SALTRNLNNYIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVK 228

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
             VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 TAVEQEMGKYFADFLLENPNEAKAVVGKMID 259


>gi|164456713|dbj|BAF97849.1| gyrase B subunit [Vibrio parahaemolyticus]
          Length = 256

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 72/266 (27%), Positives = 130/266 (48%), Gaps = 13/266 (4%)

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225
           S+++ +T+ R   I +Q +  G P +PL       +K GT+I F P  + F +   F   
Sbjct: 1   SEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKTGTQIRFWPSAETFSN-TEFHYD 58

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
            L K  +  ++L+  V      ++E        +++ F + GG++ ++Q    N++ I  
Sbjct: 59  ILAKRLRELSFLNSGVSIKLIDEREAD------KQDHFMYEGGIQAFVQHLNTNKTPIIE 112

Query: 286 EIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKK 344
           +IF    E++     +VE A+ W +     I  + N I   +GGTH +G R ALTR +  
Sbjct: 113 KIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRTLNS 170

Query: 345 YAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRD 402
           + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE+A+ +
Sbjct: 171 FMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGE 230

Query: 403 PFDHYLVQNPIEATKLLEWVIERSEE 428
               +LV+NP EA  +   +I+ +  
Sbjct: 231 KLSEFLVENPSEAKMVCSKIIDAARA 256


>gi|84380942|gb|AAZ79716.1| gyrase B [Salmonella enterica subsp. enterica serovar London]
          Length = 269

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 89/279 (31%), Positives = 141/279 (50%), Gaps = 14/279 (5%)

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ G
Sbjct: 1   RFWPSHETFTNVTEFEYEILGKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEG 53

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   +
Sbjct: 54  GIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRD 110

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK
Sbjct: 111 GGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTK 170

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTA 443
            KLVS + +  VE  + +    YL++NP +A  ++  +I+        RR +    RK A
Sbjct: 171 DKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGA 230

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           +    LPGKLADC +     +EL++VEGDSAGGSAKQ R
Sbjct: 231 LDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGR 269


>gi|110224859|emb|CAJ29974.1| DNA gyrase subunit B [Pseudomonas sp. OX1]
          Length = 283

 Score =  123 bits (309), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 78/270 (28%), Positives = 128/270 (47%), Gaps = 15/270 (5%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+EL +TV R   I+ Q +  G+P +P+          GT+I F+   + F 
Sbjct: 1   GVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGD-SETTGTQIHFKASSETFK 59

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++   
Sbjct: 60  NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 111

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++           G     VE A+ W +     +  + N I   +GGTH  G R 
Sbjct: 112 TNKTAVNQVFHFNVQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 168

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 169 ALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 228

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 AVEQEMGKYFSDFLLENPNEAKLVVGKMID 258


>gi|291196169|emb|CBG14460.1| DNA gyrase subunit B [Pseudomonas indica]
          Length = 266

 Score =  123 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 77/269 (28%), Positives = 126/269 (46%), Gaps = 15/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +T+ R   ++ Q +  G+P +PL       +  GT I F+   + F +
Sbjct: 1   VSVVNALSEELRLTIRRSGKVWEQIYRHGVPQAPLAPVGDT-DGTGTEIHFKASAETFTN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGLK +++    
Sbjct: 60  IH-FSWDILAKRLRELSFLNSGVGIVLRDERSGKE-------ELFKYEGGLKAFVEYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++           G     VE A+ W +     I  + N I   +GGTH +G R A
Sbjct: 112 NKTAVNQVFHFNVQRDDGI---GVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSA 168

Query: 338 LTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E     +        DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRHLNNYIEQEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 VEQEMGKYFADFLLENPNEAKAVVGKMID 257


>gi|39837176|emb|CAE84983.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 283

 Score =  123 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 80/270 (29%), Positives = 131/270 (48%), Gaps = 15/270 (5%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+EL +T+ R+  ++ Q +  G+P +PL    +  +  GT+I F+P  + F 
Sbjct: 1   GVSVVNALSEELMLTIRREGKVWEQLYRHGVPQAPLAPVGET-DTSGTQIHFKPSAETFQ 59

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL  ++    
Sbjct: 60  NIH-FSWDILAKRLRELSFLNSGVGIVLRDERTAKE-------ELFKYEGGLSAFVAYLN 111

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++           G     VE A+ W +     I  + N I   +GGTH +G R 
Sbjct: 112 TNKTPVNQVFHFNIQRDDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRS 168

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  I+   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 169 ALTRNLNSYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 228

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 AVEQEMGRHFADFLLENPSEAKAVVGKMID 258


>gi|50871664|emb|CAG15374.1| DNA gyrase subunit B [Pseudomonas mendocina]
          Length = 284

 Score =  123 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 83/271 (30%), Positives = 135/271 (49%), Gaps = 16/271 (5%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS EL +T+ R   I+ Q +  G+P +PL       +  GT+I F+P  + F 
Sbjct: 1   GVSVVNALSKELVLTIRRSGKIWEQTYVHGVPQAPLTAVGDT-DGTGTQIHFKPSEETFA 59

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++         ++E F + GGLK +++   
Sbjct: 60  NIH-FSWDILAKRLRELSFLNSGVGILLRDER-------TGKEELFKYEGGLKAFVEFLN 111

Query: 278 ENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            N+++++       + E+ G     VE A+ W +     I  + N I   +GGTH +G R
Sbjct: 112 TNKTVVNQVFHFNIQREEDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFR 168

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR +  Y E      K  IS   DD       I+SV + +P+F+ QTK KLVS + +
Sbjct: 169 SALTRHLNNYIEQEGLAKKFKISTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVK 228

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
             VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 TAVEQEMGKYFADFLLENPNEAKAVVGKMID 259


>gi|39837172|emb|CAE84981.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 283

 Score =  123 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 79/270 (29%), Positives = 131/270 (48%), Gaps = 15/270 (5%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+EL +T+ R+  ++ Q +  G+P +PL    +  +  GT+I F+P  + F 
Sbjct: 1   GVSVVNALSEELMLTIRREGKVWEQLYRHGVPQAPLAPVGET-DTSGTQIHFKPSAETFQ 59

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL  ++    
Sbjct: 60  NIH-FSWDILAKRLRELSFLNSGVGIVLRDERTAKE-------ELFKYEGGLSAFVAYLN 111

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++           G     VE A+ W +     I  + N I   +GGTH +G R 
Sbjct: 112 TNKTPVNQVFHFNIQRDDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRS 168

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  I+   DD       I+SV + +P+F+ QTK +LVS + + 
Sbjct: 169 ALTRNLNSYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDELVSSEVKT 228

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 AVEQEMGRHFADFLLENPSEAKAVVGKMID 258


>gi|39918801|emb|CAE85076.1| DNA gyrase subunit B [Pseudomonas stutzeri]
 gi|39918803|emb|CAE85077.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 283

 Score =  123 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 79/270 (29%), Positives = 131/270 (48%), Gaps = 15/270 (5%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+EL +T+ R+  ++ Q +  G+P +PL    +  +  GT+I F+P  + F 
Sbjct: 1   GVSVVNALSEELMLTIRREGKVWEQLYRHGVPQAPLAPVGET-DSSGTQIHFKPSAETFQ 59

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL  ++    
Sbjct: 60  NIH-FSWDILAKRLRELSFLNSGVGIVLRDERTAKE-------ELFKYEGGLSAFVAYLN 111

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++           G     VE A+ W +     I  + N I   +GGTH +G R 
Sbjct: 112 TNKTPVNEVFHFNVQRDDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRS 168

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  I+   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 169 ALTRNLNSYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 228

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            VE  +   F  +L+++P EA  ++  +I+
Sbjct: 229 AVEQEMGKHFADFLLEHPSEAKAVVGKMID 258


>gi|291196250|emb|CBG14536.1| DNA gyrase subunit B [Pseudomonas thermotolerans]
          Length = 267

 Score =  123 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 79/270 (29%), Positives = 132/270 (48%), Gaps = 16/270 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +T+ R   ++ Q +  G+P  PL          GT + F+P  + F +
Sbjct: 1   VSVVNALSEELRLTIRRDGKVWEQVYHHGVPQFPLRPVGDTEG-TGTEVHFKPSAETFSN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++         ++E F + GGLK +++    
Sbjct: 60  IH-FSWDILAKRIRELSFLNSGVGILLRDER-------TGKEEMFKYEGGLKAFVEYLNT 111

Query: 279 NRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           N+++++       + E+ G     VE A+ W +     I  + N I   +GGTH +G R 
Sbjct: 112 NKNVVNQVFHFSVQREEDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRS 168

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 169 ALTRHLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 228

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            VE  +   F  YL++NP EA  ++  +I+
Sbjct: 229 AVEQEMGKFFSDYLLENPNEARAVVGKMID 258


>gi|194395164|gb|ACF60216.1| gyrase B subunit [Enterobacter sp. ECC_22]
          Length = 139

 Score =  123 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 52/147 (35%), Positives = 84/147 (57%), Gaps = 8/147 (5%)

Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184
              S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +
Sbjct: 1   EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIY 60

Query: 185 SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244
           + G+P +PL       +K GT + F P  + F + + F+   L K  +  ++L+  V   
Sbjct: 61  THGVPQAPLAVTGDT-DKTGTMVRFWPSLETFTNVSEFEYEILAKRLRELSFLNSGVSIR 119

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKT 271
               ++  E       + F++ GG+K 
Sbjct: 120 LRDKRDNKE-------DHFHYEGGIKA 139


>gi|110224845|emb|CAJ29739.1| DNA gyrase subunit B [Pseudomonas brassicacearum]
          Length = 283

 Score =  123 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 77/270 (28%), Positives = 129/270 (47%), Gaps = 15/270 (5%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS++L +TV R   I+ Q +  G+P +P+          GT+I F+   + F 
Sbjct: 1   GVSVVNALSEQLVLTVRRSGKIWEQTYIHGVPQAPMAIVGD-SESTGTQIHFKASSETFK 59

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++   
Sbjct: 60  NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 111

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G R 
Sbjct: 112 TNKTPVNQVFHFNVQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 168

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 169 ALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 228

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 AVEQEMGKYFSDFLLENPNEAKLVVGKMID 258


>gi|194395108|gb|ACF60188.1| gyrase B subunit [Enterobacter sp. ECC_19]
 gi|194395118|gb|ACF60193.1| gyrase B subunit [Enterobacter sp. ECC_29]
 gi|194395132|gb|ACF60200.1| gyrase B subunit [Enterobacter sp. ECC_130]
 gi|194395152|gb|ACF60210.1| gyrase B subunit [Enterobacter sp. ECC_117]
          Length = 139

 Score =  123 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 52/147 (35%), Positives = 83/147 (56%), Gaps = 8/147 (5%)

Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184
              S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +
Sbjct: 1   EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIY 60

Query: 185 SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244
           + G+P +PL       +K GT + F P  + F +   F+   L K  +  ++L+  V   
Sbjct: 61  THGVPQAPLAVTGDT-DKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIR 119

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKT 271
               ++  E       + F++ GG+K 
Sbjct: 120 LRDKRDNKE-------DHFHYEGGIKA 139


>gi|57903690|gb|AAW58145.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 275

 Score =  123 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 98/266 (36%), Positives = 148/266 (55%), Gaps = 7/266 (2%)

Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321
           F++ GG++++++   + ++ +   + +   E  G     V+ A+ W +     +  + N 
Sbjct: 12  FHYEGGIRSFVEHLAQLKTPLHPNVISVTGEHNGI---VVDVALQWTDAYQETMYCFTNN 68

Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEF 379
           I   +GGTH +G R ALTR +  Y E     R   I    DD+    + +LSV + EP F
Sbjct: 69  IPQKDGGTHLAGFRAALTRTLGNYIEQNGVARQAKITFSGDDMREGMIAVLSVKVPEPSF 128

Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN 439
           + QTK KLVS D +  VE       + +L +NP EA  +   +++ +  R   RK R++ 
Sbjct: 129 SSQTKEKLVSSDVKPAVEATFGLRLEEFLQENPNEARAIAGKIVDAARAREAARKARDLT 188

Query: 440 RKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
           R+   +    LPGKLADC +     +ELFIVEGDSAGGSAKQ RNR NQAVLPLRGKILN
Sbjct: 189 RRKGVLDIAGLPGKLADCQEKDPAMSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILN 248

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT 524
           V  A  +++ ++ ++  L+ ALG   
Sbjct: 249 VERARFDRMLSSAEVGTLITALGTGI 274


>gi|300490570|gb|ADK22869.1| DNA gyrase B subunit [Vibrio communis]
          Length = 258

 Score =  123 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 72/268 (26%), Positives = 130/268 (48%), Gaps = 13/268 (4%)

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+++ +T+ R   I +Q +  G P +PL       ++ GT+I F P  + F +  
Sbjct: 1   VVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETFTN-I 58

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L K  +  ++L+  V      ++E        + + F F GG++ +++    N+
Sbjct: 59  EFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KSDHFMFEGGIQAFVEHLNTNK 112

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + I  +IF    E++      VE A+ W +     I  + N I   +GGTH +G R ALT
Sbjct: 113 TPIIEKIFHFDFERED--GIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALT 170

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE
Sbjct: 171 RTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 230

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIER 425
           +++ +    +L++NP     +   +I+ 
Sbjct: 231 SSMGEKLSEFLIENPTVTKMVCSKIIDS 258


>gi|194395100|gb|ACF60184.1| gyrase B subunit [Enterobacter sp. ECC_118]
 gi|194395130|gb|ACF60199.1| gyrase B subunit [Enterobacter sp. ECC_121]
 gi|194395170|gb|ACF60219.1| gyrase B subunit [Enterobacter sp. ECC_42]
          Length = 139

 Score =  123 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 52/147 (35%), Positives = 84/147 (57%), Gaps = 8/147 (5%)

Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184
              S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +
Sbjct: 1   EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQLY 60

Query: 185 SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244
           + G+P +PL    +  +K GT + F P  + F +   F+   L K  +  ++L+  V   
Sbjct: 61  THGVPQAPLAVTGET-DKTGTMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIR 119

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKT 271
               ++  E       + F++ GG+K 
Sbjct: 120 LRDKRDNKE-------DHFHYEGGIKA 139


>gi|194395088|gb|ACF60178.1| gyrase B subunit [Enterobacter sp. ECC_101]
 gi|194395102|gb|ACF60185.1| gyrase B subunit [Enterobacter sp. ECC_129]
 gi|194395122|gb|ACF60195.1| gyrase B subunit [Enterobacter sp. ECC_104]
 gi|194395158|gb|ACF60213.1| gyrase B subunit [Enterobacter sp. ECC_68]
          Length = 139

 Score =  123 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 52/147 (35%), Positives = 83/147 (56%), Gaps = 8/147 (5%)

Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184
              S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +
Sbjct: 1   EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQLY 60

Query: 185 SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244
           + G+P +PL       +K GT + F P  + F +   F+   L K  +  ++L+  V   
Sbjct: 61  THGVPQAPLAVTGDT-DKTGTMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIR 119

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKT 271
               ++  E       + F++ GG+K 
Sbjct: 120 LRDKRDNKE-------DHFHYEGGIKA 139


>gi|146189386|emb|CAL91161.1| DNA gyrase subunit beta [Rhizobium huautlense]
          Length = 224

 Score =  123 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 68/233 (29%), Positives = 114/233 (48%), Gaps = 12/233 (5%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS  L + + R   +    F+ G+  +PL+   +   + GT +TF 
Sbjct: 1   SGGLHGVGVSVVNALSVWLKLRIRRNGKVHEISFTHGVADAPLKVIGEYEGRSGTEVTFL 60

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
             P+ F     +D   L    +  A+L+  V+   +  ++   +      EE  + GGL+
Sbjct: 61  ASPQTF-TMTEYDYNTLEHRLRELAFLNSGVRIRLTDKRKPDIRE-----EEMLYDGGLE 114

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGT 329
            +++     +  +  +    K EK G    TVE A+ W +   E    + N I   +GGT
Sbjct: 115 AFVRYLDRAKKPLVEKPVAIKGEKDGI---TVEVAMWWNDSYHENVLCFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
           H +G R ALTR +  YA+ +    K  +++  +D       +LSV + +P+F+
Sbjct: 172 HMAGFRGALTRQVTSYADTSGITKKEKVTLQGEDCREGLTAVLSVKVPDPKFS 224


>gi|224174520|emb|CAR92678.1| DNA gyrase, B subunit [Bradyrhizobium sp. LMG 11955]
          Length = 222

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 115/231 (49%), Gaps = 10/231 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS +L + + R N     +F+ G  ++PL+       KRGT +TF 
Sbjct: 1   SGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAHGDAVAPLKVVGDAPGKRGTEVTFL 60

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
              + F +   +D A L    +  A+L+  V    S  +   EK      EE ++ GG++
Sbjct: 61  ASTETFKN-VEYDFATLEHRLRELAFLNSGVNIILSDMRHAVEKR-----EEMHYSGGVE 114

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGT 329
            +++    N+  +       ++E  G     VE A+ W +   E    + N I   +GGT
Sbjct: 115 EFVKYLDRNKKALVPTPIMVRSEANGI---GVEAALWWNDSYHENVLCFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFA 380
           H +G R ALTR +  YAE    K  I++  DD       +LSV + +P+F+
Sbjct: 172 HLAGFRGALTRQVNGYAEANAKKEKIALTGDDCREGLTAVLSVKVPDPKFS 222


>gi|66271246|gb|AAY43836.1| DNA gyrase subunit B [Vibrio sp. PN 9801]
          Length = 249

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 74/259 (28%), Positives = 130/259 (50%), Gaps = 13/259 (5%)

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           V +SVVNALS+++ +T+ R   I +Q +  G P +PL       ++ GT+I F P  + F
Sbjct: 1   VRVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETF 59

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
            +   F    L K  +  ++L+  V      ++E        + + F F GG++ +++  
Sbjct: 60  SN-TEFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KSDHFMFEGGIQAFVEHL 112

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
             N++ I  +IF    E++     +VE A+ W +     I  + N I   +GGTH +G R
Sbjct: 113 NTNKTPIIEKIFHFDFERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFR 170

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +
Sbjct: 171 AALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVK 230

Query: 394 RTVENALRDPFDHYLVQNP 412
             VE+A+ +    +L++NP
Sbjct: 231 SAVESAMGEKLSEFLIENP 249


>gi|224174518|emb|CAR92677.1| DNA gyrase, B subunit [Bradyrhizobium sp. LMG 11950]
          Length = 222

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 115/231 (49%), Gaps = 10/231 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS +L + + R N     +F+ G  ++PL+       +RGT +TF 
Sbjct: 1   SGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAHGDAVAPLKVVGDAPGRRGTEVTFL 60

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
              + F +   +D A L    +  A+L+  V    S  +   EK      EE ++ GG++
Sbjct: 61  ASTETFKN-IEYDFATLEHRLRELAFLNSGVNIILSDMRHAVEKR-----EEMHYSGGVE 114

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGT 329
            +++    N+  I       ++E  G     VE A+ W +   E    + N I   +GGT
Sbjct: 115 EFVKYLDRNKKAIVPAPIMVRSEANGI---GVEAALWWNDSYHENVLCFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFA 380
           H +G R ALTR +  YAE    K  I++  DD       +LSV + +P+F+
Sbjct: 172 HLAGFRGALTRQVNGYAEANAKKEKIALTGDDCREGLTAVLSVKVPDPKFS 222


>gi|39837174|emb|CAE84982.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 283

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 80/270 (29%), Positives = 131/270 (48%), Gaps = 15/270 (5%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+EL +T+ R+  ++ Q +  G+P +PL    +  +  GT+I F+P  + F 
Sbjct: 1   GVSVVNALSEELMLTIRREGKVWEQLYRHGVPQAPLGPVGET-DTSGTQIHFKPSAETFQ 59

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL  ++    
Sbjct: 60  NIH-FSWDILAKRLRELSFLNSGVGIVLRDERTAKE-------ELFKYEGGLSAFVAYLN 111

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++           G     VE A+ W +     I  + N I   +GGTH +G R 
Sbjct: 112 TNKTPVNQVFHFNIQRDDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRS 168

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  I+   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 169 ALTRNLNSYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 228

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 AVEQEMGRHFADFLLENPSEAKAVVGKMID 258


>gi|50871518|emb|CAF74831.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 283

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 79/270 (29%), Positives = 131/270 (48%), Gaps = 15/270 (5%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+EL +T+ R+  ++ Q +  G+P +PL    +  +  GT+I F+P  + F 
Sbjct: 1   GVSVVNALSEELMLTIRREGKVWEQLYRHGVPQAPLAPVGET-DSSGTQIHFKPSAETFQ 59

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL  ++    
Sbjct: 60  NIH-FSWDILAKRLRELSFLNSGVGIVLRDERTAKE-------ELFKYEGGLSAFVAYLN 111

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++           G     VE A+ W +     I  + N I   +GGTH +G R 
Sbjct: 112 TNKTPVNQVFHFNMQRDDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRS 168

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  I+   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 169 ALTRNLNSYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 228

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            VE  +   F  +L+++P EA  ++  +I+
Sbjct: 229 AVEQEMGKHFADFLLEHPSEAKAVVGKMID 258


>gi|224174494|emb|CAR92665.1| DNA gyrase, B subunit [Bradyrhizobium canariense]
 gi|224174496|emb|CAR92666.1| DNA gyrase, B subunit [Bradyrhizobium canariense]
 gi|224174544|emb|CAR92690.1| DNA gyrase, B subunit [Bradyrhizobium sp. MCLA07]
 gi|224174546|emb|CAR92691.1| DNA gyrase, B subunit [Bradyrhizobium sp. MCLA12]
 gi|224174548|emb|CAR92692.1| DNA gyrase, B subunit [Bradyrhizobium sp. MCLA22]
 gi|224174550|emb|CAR92693.1| DNA gyrase, B subunit [Bradyrhizobium sp. MCLA23]
 gi|224174552|emb|CAR92694.1| DNA gyrase, B subunit [Bradyrhizobium sp. MCAH03]
 gi|224174554|emb|CAR92695.1| DNA gyrase, B subunit [Bradyrhizobium sp. MCAH06]
 gi|224174556|emb|CAR92696.1| DNA gyrase, B subunit [Bradyrhizobium sp. MCAH12]
 gi|224174558|emb|CAR92697.1| DNA gyrase, B subunit [Bradyrhizobium sp. MCAH13]
 gi|224174568|emb|CAR92702.1| DNA gyrase, B subunit [Bradyrhizobium sp. MCOC04]
 gi|224174570|emb|CAR92703.1| DNA gyrase, B subunit [Bradyrhizobium sp. MCOC05]
 gi|224174572|emb|CAR92704.1| DNA gyrase, B subunit [Bradyrhizobium sp. MCOC23]
 gi|224174574|emb|CAR92705.1| DNA gyrase, B subunit [Bradyrhizobium sp. MCOC24]
          Length = 222

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 115/231 (49%), Gaps = 10/231 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS +L + + R N     +F+ G  ++PL+       +RGT +TF+
Sbjct: 1   SGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAHGDAVAPLKVVGDAPGRRGTEVTFQ 60

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
              + F +   +D A L    +  A+L+  V    S  +   EK      EE ++ GG++
Sbjct: 61  ASTETFKN-IEYDFATLEHRLRELAFLNSGVNIALSDMRHAVEKR-----EEMHYSGGVE 114

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGT 329
            +++    N+  I       + E  G     VE A+ W +   E    + N I   +GGT
Sbjct: 115 EFVKYLDRNKKAIVPAPIMVRAESNGI---GVEAALWWNDSYHENVLCFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFA 380
           H +G R ALTR +  YAE    K  I++  DD       +LSV + +P+F+
Sbjct: 172 HLAGFRGALTRQVNGYAEANAKKEKIALTGDDCREGLTAVLSVKVPDPKFS 222


>gi|110224853|emb|CAJ29743.1| DNA gyrase subunit B [Pseudomonas thivervalensis]
          Length = 283

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 77/270 (28%), Positives = 129/270 (47%), Gaps = 15/270 (5%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS++L +TV R   I+ Q +  G+P +P+          GT+I F+   + F 
Sbjct: 1   GVSVVNALSEQLVLTVRRSGKIWEQTYVHGVPQAPMAIVGD-SESTGTQIHFKASSETFK 59

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++   
Sbjct: 60  NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 111

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G R 
Sbjct: 112 TNKTAVNQVFHFNVQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 168

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 169 ALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 228

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 AVEQEMGKYFSDFLLENPNEAKLVVGKMID 258


>gi|50871500|emb|CAF05627.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 283

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 80/270 (29%), Positives = 131/270 (48%), Gaps = 15/270 (5%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+EL +T+ R+  ++ Q +  G+P +PL    +  +  GT+I F+P  + F 
Sbjct: 1   GVSVVNALSEELLLTIRREGKVWEQLYRHGVPQAPLAGVGET-DTSGTQIHFKPSAETFQ 59

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL  ++    
Sbjct: 60  NIH-FSWDILAKRLRELSFLNSGVGIVLRDERTAKE-------ELFKYEGGLSAFVAYLN 111

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++           G     VE A+ W +     I  + N I   +GGTH +G R 
Sbjct: 112 TNKTAVNQVFHFNVQRDDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRS 168

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  IS   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 169 ALTRNLNNYIEQEGLAKKHKISTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 228

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            VE  +   F  +L+++P EA  ++  +I+
Sbjct: 229 AVEQEMGKYFADFLLEHPNEAKAVVGKMID 258


>gi|194395140|gb|ACF60204.1| gyrase B subunit [Enterobacter sp. ECC_62]
          Length = 139

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 52/147 (35%), Positives = 83/147 (56%), Gaps = 8/147 (5%)

Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184
              S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +
Sbjct: 1   EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQLY 60

Query: 185 SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244
           + G+P +PL       +K GT + F P  + F +   F+   L K  +  ++L+  V   
Sbjct: 61  THGVPQAPLAVTGDT-DKTGTMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIR 119

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKT 271
               ++  E       + F++ GG+K 
Sbjct: 120 LRDKRDGKE-------DHFHYEGGIKA 139


>gi|281331664|emb|CAZ40026.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 239

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 73/247 (29%), Positives = 124/247 (50%), Gaps = 13/247 (5%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS +L V V +    + Q+FS G  ++ L K E     RGT + F P   
Sbjct: 1   HGVGVSVVNALSQKLLVDVFQNGFHYQQEFSNGAAVTALAKLETTTK-RGTTVRFWPSTV 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
            F D   F    L +  +  ++L+  VK   + ++          +++F++ GG++++++
Sbjct: 60  AFHDNVEFHYDILARRLRELSFLNSGVKIVLADERGD------GRRDDFHYEGGIRSFVE 113

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              + ++ +   + +   E  G     V+ A+ W +     +  + N I   +GGTH +G
Sbjct: 114 HLAQLKTPLHPNVISVTGEHNGI---VVDVALQWTDSYQETMYCFTNNIPQKDGGTHLAG 170

Query: 334 LRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y E     +   I++  DD+    + +LSV + +P F+ QTK KLVS D
Sbjct: 171 FRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSD 230

Query: 392 AQRTVEN 398
            +  VE 
Sbjct: 231 VRPAVEK 237


>gi|285310174|emb|CBH41068.1| DNA gyrase beta subunit [Pseudomonas nitroreducens]
          Length = 278

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 79/271 (29%), Positives = 131/271 (48%), Gaps = 16/271 (5%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS EL +T+ R+  ++ Q +  G+P  PL       +  GT + F+P P+ F 
Sbjct: 1   GVSVVNALSHELRLTIRREGKVWEQVYHHGVPQFPLRPVGDT-DGSGTEVHFKPSPETFH 59

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++   
Sbjct: 60  NIH-FSWDILAKRIRELSFLNSGVGIVLRDERAGKE-------ELFKYEGGLRAFVEYLN 111

Query: 278 ENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
            N++ ++       + E+ G     VE A+ W +     I  + N I   +GGTH +G R
Sbjct: 112 TNKTAVNQVFHFNCQREEDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFR 168

Query: 336 VALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR +  Y E     +        DD       I+SV + +P+F+ QTK KLVS + +
Sbjct: 169 SALTRHLNNYIEQEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVK 228

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIE 424
             VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 TAVEQEMGKYFADFLLENPNEAKAVVGKMID 259


>gi|291196143|emb|CBG14434.1| DNA gyrase subunit B [Pseudomonas cannabina]
          Length = 266

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 77/269 (28%), Positives = 128/269 (47%), Gaps = 15/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+I F+P    F +
Sbjct: 1   VSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDTTGTQIHFKPSADTFKN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++           G     VE A+ W +     +  + N I   +GGTH  G R A
Sbjct: 112 NKTPVNEVFHFNVQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 VEQEMGKYFSDFLLENPNEAKAVVGKMID 257


>gi|291196163|emb|CBG14454.1| DNA gyrase subunit B [Pseudomonas graminis]
          Length = 266

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 76/269 (28%), Positives = 130/269 (48%), Gaps = 15/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+ L++TV R   ++ Q +  G+P  P++   +  +  GT I F+P  + F +
Sbjct: 1   VSVVNALSEVLNLTVRRSGKVWEQTYVHGVPQEPMQIVGE-SDTTGTEIHFKPSSETFKN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G R A
Sbjct: 112 NKTPVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 VEQEMGKYFSDFLLENPNEAKAVVGKMID 257


>gi|213585600|ref|ZP_03367426.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 289

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/84 (41%), Positives = 56/84 (66%)

Query: 525 RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ 584
           R +Y  + LRY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++  PPL+++ +
Sbjct: 2   RDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKK 61

Query: 585 GTKSVYAHDEEHKQKILEEFKKHG 608
           G +  Y  D+E   +        G
Sbjct: 62  GKQEQYIKDDEAMDQYQISIALDG 85



 Score = 89.1 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 28/49 (57%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645
            ++ LE   K  +  + I R+KGLGEM   QL ET MD   R +LRV +
Sbjct: 241 FEQALEWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVTV 289


>gi|194395098|gb|ACF60183.1| gyrase B subunit [Enterobacter sp. ECC_119]
 gi|194395106|gb|ACF60187.1| gyrase B subunit [Enterobacter sp. ECC_120]
 gi|194395156|gb|ACF60212.1| gyrase B subunit [Enterobacter sp. ECC_150]
          Length = 139

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 52/147 (35%), Positives = 83/147 (56%), Gaps = 8/147 (5%)

Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184
              S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +
Sbjct: 1   EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQLY 60

Query: 185 SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244
           + G+P +PL       +K GT + F P  + F +   F+   L K  +  ++L+  V   
Sbjct: 61  THGVPQAPLAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYDILAKRLRELSFLNSGVSIR 119

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKT 271
               ++  E       + F++ GG+K 
Sbjct: 120 LRDKRDGKE-------DHFHYEGGIKA 139


>gi|115500932|dbj|BAF34136.1| B subunit gyrase [Azotobacter salinestris]
          Length = 225

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 74/235 (31%), Positives = 115/235 (48%), Gaps = 16/235 (6%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS+EL +T+ R   ++ Q +  G+P +PL          GT+I
Sbjct: 1   YKVSGGLHGVGVSVVNALSEELVLTIRRDGKVWEQTYVHGVPQAPLAAVGDTEG-TGTQI 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+P  + F +   F    L K  +  ++L+  V      ++   E       E F + G
Sbjct: 60  HFKPSAETFHNIH-FSWDILAKRLRELSFLNSGVGIVLKDERSGKE-------ELFKYEG 111

Query: 268 GLKTYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTD 325
           GLK ++     N++ +S       + E+ G     VE A+ W +  N  I  + N I   
Sbjct: 112 GLKAFVDYLNTNKNAVSQVFHFSVQREEDGV---GVEVALQWNDGFNENILCFTNNIPQR 168

Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378
           +GGTH +G R ALTR +  Y E      K  ++   DD       I+SV + +P+
Sbjct: 169 DGGTHLAGFRSALTRNLNAYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPK 223


>gi|281331992|emb|CAZ39970.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 244

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 74/248 (29%), Positives = 125/248 (50%), Gaps = 13/248 (5%)

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SV NALS +L V V +    + Q+FS G  ++ L K E     RGT + F P  
Sbjct: 1   LHGVGVSVXNALSQKLLVDVFQNGFHYQQEFSNGAAVTALAKLETTTK-RGTTVRFWPST 59

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
             F D   F    L +  +  ++L+  VK   + ++          +++F++ GG+++++
Sbjct: 60  VAFHDNVEFHYDILARRLRELSFLNSGVKIVLADERGD------GRRDDFHYEGGIRSFV 113

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   + ++ +   + +   E  G     V+ A+ W +     +  + N I   +GGTH +
Sbjct: 114 EHLAQLKTPLHPNVISVTGEHNGI---VVDVALQWTDSYQETMYCFTNNIPQKDGGTHLA 170

Query: 333 GLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR +  Y E     +   I++  DD+    + +LSV + +P F+ QTK KLVS 
Sbjct: 171 GFRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSS 230

Query: 391 DAQRTVEN 398
           D +  VEN
Sbjct: 231 DVRPAVEN 238


>gi|224174522|emb|CAR92679.1| DNA gyrase, B subunit [Bradyrhizobium sp. LMG 10300]
          Length = 222

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 115/231 (49%), Gaps = 10/231 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS +L + + R++      F+ G  ++PL+       KRGT +TF 
Sbjct: 1   SGGLHGVGVSVVNALSSKLELRIWREDKEHLIVFAHGDAVAPLQVVGDTPGKRGTEVTFL 60

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
              + F     +D A L    +  A+L+  V    S  +   EK      EE ++ GG++
Sbjct: 61  ASTETF-KIIEYDYATLEHRLRELAFLNSGVHIILSDMRHAVEKR-----EEMFYSGGVE 114

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGT 329
            +++    N+  I       ++E  G    TVE A+ W +   E    + N I   +GGT
Sbjct: 115 EFVKYLDRNKKAIVPNPIMVRSEANGI---TVEAALWWNDSYHENVLCFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFA 380
           H +G R ALTR +  YAE    K  I++  DD       +LSV + +P+F+
Sbjct: 172 HLAGFRGALTRQVNGYAEANAKKEKIALTGDDCREGLTAVLSVKVPDPKFS 222


>gi|194395160|gb|ACF60214.1| gyrase B subunit [Enterobacter sp. ECC_105]
          Length = 139

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/147 (34%), Positives = 81/147 (55%), Gaps = 8/147 (5%)

Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184
              S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +
Sbjct: 1   EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQLY 60

Query: 185 SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244
           + G+P +PL          GT + F P  + F +   F+   L K  +  ++L+  V   
Sbjct: 61  THGVPQAPLAVTGDTEK-TGTMVRFCPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIR 119

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKT 271
               ++  E       + F++ GG+K 
Sbjct: 120 LRDKRDNKE-------DHFHYEGGIKA 139


>gi|73666147|gb|AAZ79750.1| gyrase B [Salmonella enterica subsp. enterica serovar Braenderup]
          Length = 269

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 89/279 (31%), Positives = 141/279 (50%), Gaps = 14/279 (5%)

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ G
Sbjct: 1   RFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEG 53

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDE 326
           G+K +++   +N++ I   IF   TEK G     VE A+ W +   E    + N I   +
Sbjct: 54  GIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYRFTNNIPQRD 110

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK
Sbjct: 111 GGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTK 170

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTA 443
            KLVS + +  VE  + +    YL++NP +A  ++  +I+        RR +    RK A
Sbjct: 171 DKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGA 230

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           +    LPGKLADC +     +EL++VEGDSAGGSAKQ R
Sbjct: 231 LDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGR 269


>gi|117555558|gb|ABK35306.1| DNA gyrase subunit B [Acinetobacter schindleri]
          Length = 300

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 86/304 (28%), Positives = 143/304 (47%), Gaps = 16/304 (5%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS++L +T+ R   I  Q++  G    PL+      ++ GTR+ F P  + F     F+
Sbjct: 1   ALSEKLELTIHRAGHIHQQEYRHGDSQYPLKVIGDT-DRTGTRVRFWPSAETFSQTI-FN 58

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L +  +  ++L+  V+     ++  AE         F + GGL  +++   E ++ +
Sbjct: 59  VDILARRLRELSFLNAGVRIVLRDERINAE-------YVFDYEGGLSEFVKYINEGKTHL 111

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
           +         + G     VE A+ W +     +  + N I   +GGTH +G R ALTRG+
Sbjct: 112 NDIFHFTTMAENGI---GVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRAALTRGL 168

Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             Y +      K  +++  DD       I+SV + +P+F+ QTK KLVS + +  VE A+
Sbjct: 169 NNYMDSENILKKEKVAVSGDDAREGLTAIVSVKVPDPKFSSQTKEKLVSSEVKTAVEQAM 228

Query: 401 RDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
              F  YL++NP  A  +   +I         R+ +    RK+A+    LPGKLADC + 
Sbjct: 229 NKSFSEYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEK 288

Query: 460 IAHG 463
           I H 
Sbjct: 289 IQHC 292


>gi|291196139|emb|CBG14430.1| DNA gyrase subunit B [Pseudomonas borbori]
          Length = 266

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 80/269 (29%), Positives = 131/269 (48%), Gaps = 15/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+ L +TV R   I+ Q +S G+PL P+       +  GT+I F+P  + F +
Sbjct: 1   VSVVNALSEHLLLTVRRSGHIWEQTYSHGVPLEPMRIVGD-SDTTGTQIHFKPSAETFAN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRLRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLNV 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++         + G     VE A+ W +     +  + N I   +GGTH +G R A
Sbjct: 112 NKTAVNQVFHFSIQREDGI---GVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFRSA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  I+   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRNLNAYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 VEQEMGKHFSDFLLENPGEAKAVVGKMID 257


>gi|291196135|emb|CBG14426.1| DNA gyrase subunit B [Pseudomonas avellanae]
          Length = 266

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 77/269 (28%), Positives = 128/269 (47%), Gaps = 15/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+I F+P    F +
Sbjct: 1   VSVVNALSELLLLTVRRSGKIWEQTYIHGVPQEPMKIVGE-SDSTGTQIHFKPSADTFKN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++           G     VE A+ W +     +  + N I   +GGTH  G R A
Sbjct: 112 NKTPVNEVFHFNVQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 VEQEMGKYFSDFLLENPNEAKAVVGKMID 257


>gi|66271252|gb|AAY43839.1| DNA gyrase subunit B [Vibrio sp. CRW 9807]
          Length = 276

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 74/267 (27%), Positives = 132/267 (49%), Gaps = 13/267 (4%)

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS+++ +T+ R   I +Q +  G P +PL       ++ GT+I F P  + F +  
Sbjct: 1   VVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETFTN-I 58

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F    L K  +  ++L+  V      ++E        + + F F GG++ +++    N+
Sbjct: 59  EFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KSDHFMFEGGIQAFVEHLNTNK 112

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           + I  +IF    E++      VE A+ W +     I  + N I   +GGTH +G R ALT
Sbjct: 113 TPIIEKIFHFDFERED--GIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALT 170

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE
Sbjct: 171 RTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE 230

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIE 424
           +++ +    +L++NP EA  +   +I+
Sbjct: 231 SSMGEKLSEFLIENPTEAKMVCSKIID 257


>gi|291196252|emb|CBG14538.1| DNA gyrase subunit B [Pseudomonas tremae]
          Length = 266

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 77/269 (28%), Positives = 129/269 (47%), Gaps = 15/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+I F+P  + F +
Sbjct: 1   VSVVNALSEILLLTVRRSGKIWEQTYVHGVPKEPMKIVGE-SDTTGTQIHFKPSAETFKN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILTKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++           G     VE A+ W +     +  + N I   +GGTH  G R A
Sbjct: 112 NKTPVNQVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 VEQEMGKYFSDFLLENPNEAKAVVGKMID 257


>gi|167995555|gb|ACA13613.1| GyrB [Thalassospira sp. MCCC 1A01051]
 gi|167995559|gb|ACA13615.1| GyrB [Thalassospira sp. MCCC 1A01072]
 gi|167995579|gb|ACA13625.1| GyrB [Thalassospira sp. MCCC 1A01300]
 gi|167995583|gb|ACA13627.1| GyrB [Thalassospira sp. MCCC 1A01330]
 gi|167995587|gb|ACA13629.1| GyrB [Thalassospira sp. MCCC 1A01448]
 gi|167995609|gb|ACA13640.1| GyrB [Thalassospira sp. MCCC 1A02094]
          Length = 306

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 98/315 (31%), Positives = 152/315 (48%), Gaps = 19/315 (6%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------RNKRGTRITFRPDPKIFG 217
           ALS  L + + R       +FS G  + PLE           +   GT +TF PD +IF 
Sbjct: 1   ALSTLLKLRIWRNGKEHYMEFSGGDAIKPLEIVGDAPMTAEGKPLTGTEVTFYPDAEIFT 60

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F+   L    +  A+L+  V      ++     +G P + + ++ GG++ +++   
Sbjct: 61  -MTEFNLPTLEHRLRELAFLNSGVILTLRDER-----HGEPVETKLHYEGGIRAFVEYLD 114

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++    E      EK G    TVE ++ W +        + N I   +GGTH +G R 
Sbjct: 115 RNKTPQIEEPIAIVGEKDGI---TVEVSLQWNDSYHETTLCFTNNIPQRDGGTHMAGFRA 171

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA+ +    K  +S+  DD       ++SV + +P+F+ QTK KLVS + + 
Sbjct: 172 ALTRQINSYAQESGIVKKEKVSLSGDDAREGLTCVISVKVPDPKFSSQTKDKLVSSEVRP 231

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            VEN + D    +L ++P +A K++  V+E +  R   RK RE   RK A+    LPGKL
Sbjct: 232 VVENIVNDRLQQWLEEHPQDARKIVTKVVEAASAREAARKARELTRRKGALDISSLPGKL 291

Query: 454 ADCSQNIAHGTELFI 468
           ADC +  A   ELFI
Sbjct: 292 ADCQERDASKAELFI 306


>gi|39837180|emb|CAE84985.1| DNA gyrase subunit B [Pseudomonas stutzeri]
 gi|39918797|emb|CAE85074.1| DNA gyrase subunit B [Pseudomonas stutzeri]
 gi|39918799|emb|CAE85075.1| DNA gyrase subunit B [Pseudomonas stutzeri]
 gi|50871502|emb|CAF74823.1| DNA gyrase subunit B [Pseudomonas stutzeri]
 gi|50871506|emb|CAF74825.1| DNA gyrase subunit B [Pseudomonas stutzeri]
 gi|50871508|emb|CAF74826.1| DNA gyrase subunit B [Pseudomonas stutzeri]
 gi|50871510|emb|CAF74827.1| DNA gyrase subunit B [Pseudomonas stutzeri]
 gi|50871512|emb|CAF74828.1| DNA gyrase subunit B [Pseudomonas stutzeri]
 gi|163263226|emb|CAI54234.2| DNA gyrase subunit B [Pseudomonas chloritidismutans]
          Length = 283

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 79/270 (29%), Positives = 131/270 (48%), Gaps = 15/270 (5%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+EL +T+ R+  ++ Q +  G+P +PL    +  +  GT+I F+P  + F 
Sbjct: 1   GVSVVNALSEELMLTIRREGKVWEQLYRHGVPQAPLAPVGET-DTSGTQIHFKPSSETFQ 59

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL  ++    
Sbjct: 60  NIH-FSWDILAKRLRELSFLNSGVGIVLRDERTAKE-------ELFKYEGGLSAFVAYLN 111

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++           G     VE A+ W +     I  + N I   +GGTH +G R 
Sbjct: 112 TNKTPVNEVFHFNVQRDDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRS 168

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  I+   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 169 ALTRNLNSYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 228

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            VE  +   F  +L+++P EA  ++  +I+
Sbjct: 229 AVEQEMGKYFGDFLLEHPGEAKAVVGKMID 258


>gi|224174536|emb|CAR92686.1| DNA gyrase, B subunit [Bradyrhizobium sp. LMG 10705]
 gi|224174538|emb|CAR92687.1| DNA gyrase, B subunit [Bradyrhizobium sp. LMG 10706]
          Length = 222

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 116/231 (50%), Gaps = 10/231 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS +L + + R +     +F+ G  ++PL+   +   KRGT +TF 
Sbjct: 1   SGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHGDAVAPLKVVGEAPGKRGTEVTFL 60

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
              + F +   +D A L    +  A+L+  V    S  +   EK      EE ++ GG++
Sbjct: 61  ASTETFKN-VEYDFATLEHRLRELAFLNSGVNIVLSDMRHAVEKR-----EEMHYSGGVE 114

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGT 329
            +++    N+  I       ++E  G     VE A+ W +   E    + N I   +GGT
Sbjct: 115 EFVKYLDRNKKAIVPAPIMVRSEANGI---GVEAALWWNDSYHENVLCFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFA 380
           H +G R ALTR +  YAE    K  I++  DD       +LSV + +P+F+
Sbjct: 172 HLAGFRGALTRQVNGYAEANAKKEKIALTGDDCREGLTAVLSVKVPDPKFS 222


>gi|194395144|gb|ACF60206.1| gyrase B subunit [Enterobacter sp. ECC_135]
          Length = 139

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/147 (35%), Positives = 83/147 (56%), Gaps = 8/147 (5%)

Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184
              S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +
Sbjct: 1   EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQLY 60

Query: 185 SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244
           + G+P +PL       +K GT + F P  + F +   F+   L K  +  ++L+  V   
Sbjct: 61  THGVPQAPLAVTGDT-DKTGTMVRFWPSHETFTNVTEFEYDILAKRLRELSFLNSGVSIR 119

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKT 271
               ++  E       + F++ GG+K 
Sbjct: 120 LKDKRDGKE-------DHFHYEGGIKA 139


>gi|325305388|gb|ADZ06042.1| DNA gyrase subunit B [Aeromonas veronii bv. sobria]
          Length = 287

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 91/298 (30%), Positives = 148/298 (49%), Gaps = 16/298 (5%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            ++ Q +  G P +PL++        GT + F P P IF D   F    L K  +  ++L
Sbjct: 2   HVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEILAKRLRELSFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+ G 
Sbjct: 60  NSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGI 112

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y E      K  
Sbjct: 113 ---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMEKEDYSKKAK 169

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
            +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++NP +
Sbjct: 170 SAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGD 229

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVEG
Sbjct: 230 AKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEG 287


>gi|194395150|gb|ACF60209.1| gyrase B subunit [Enterobacter sp. ECC_153]
 gi|194395172|gb|ACF60220.1| gyrase B subunit [Enterobacter sp. ECC_39]
          Length = 139

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/147 (35%), Positives = 82/147 (55%), Gaps = 8/147 (5%)

Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184
              S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +
Sbjct: 1   EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIY 60

Query: 185 SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244
             G+P +PL       +K GT + F P  + F +   F+   L K  +  ++L+  V   
Sbjct: 61  QHGVPEAPLAVTGDT-DKTGTMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIR 119

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKT 271
               ++  E       + F++ GG+K 
Sbjct: 120 LRDKRDNKE-------DHFHYEGGIKA 139


>gi|146189328|emb|CAL91132.1| DNA gyrase subunit beta [Bradyrhizobium elkanii]
 gi|224174498|emb|CAR92667.1| DNA gyrase, B subunit [Bradyrhizobium elkanii]
 gi|331029403|gb|AEC49851.1| DNA gyrase beta subunit [Bradyrhizobium sp. SEMIA 6160]
          Length = 222

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 115/231 (49%), Gaps = 10/231 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS +L + + R +     +F+ G  ++PL+       KRGT +TF 
Sbjct: 1   SGGLHGVGVSVVNALSSKLALRIWRDDKEHYIEFAHGDAVAPLKVVGDAPGKRGTEVTFL 60

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
              + F +   +D A L    +  A+L+  V    S  +   EK      EE ++ GG++
Sbjct: 61  ASVETFKN-IEYDFATLEHRLRELAFLNSGVNIVLSDMRHAVEKR-----EEMHYSGGVE 114

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGT 329
            +++    N+  I       ++E  G     VE A+ W +   E    + N I   +GGT
Sbjct: 115 EFVKYLDRNKKAIVPAPIMVRSEANGI---GVEAALWWNDSYHENVLCFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFA 380
           H +G R ALTR +  YAE    K  I++  DD       +LSV + +P+F+
Sbjct: 172 HLAGFRGALTRQVNGYAEANAKKEKIALTGDDCREGLTAVLSVKVPDPKFS 222


>gi|325305394|gb|ADZ06045.1| DNA gyrase subunit B [Aeromonas veronii bv. veronii]
          Length = 287

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 90/298 (30%), Positives = 148/298 (49%), Gaps = 16/298 (5%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            ++ Q +  G P +PL++        GT + F P P IF D   F    L K  +  ++L
Sbjct: 2   HVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEILAKRLRELSFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+ G 
Sbjct: 60  NSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGI 112

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      K  
Sbjct: 113 ---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAK 169

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
            +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++NP +
Sbjct: 170 SAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGD 229

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVEG
Sbjct: 230 AKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEG 287


>gi|39837160|emb|CAE84975.1| DNA gyrase subunit B [Pseudomonas stutzeri]
 gi|39837162|emb|CAE84976.1| DNA gyrase subunit B [Pseudomonas stutzeri]
 gi|39837166|emb|CAE84978.1| DNA gyrase subunit B [Pseudomonas stutzeri]
 gi|39837168|emb|CAE84979.1| DNA gyrase subunit B [Pseudomonas stutzeri]
 gi|39837170|emb|CAE84980.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 283

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 79/270 (29%), Positives = 131/270 (48%), Gaps = 15/270 (5%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+EL +T+ R+  ++ Q +  G+P +PL    +  +  GT+I F+P  + F 
Sbjct: 1   GVSVVNALSEELLLTIRREGKVWEQLYRHGVPQAPLAAVGET-DTSGTQIHFKPSAETFQ 59

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL  ++    
Sbjct: 60  NIH-FSWDILAKRLRELSFLNSGVGIVLRDERTAKE-------ELFKYEGGLSAFVAYLN 111

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++           G     VE A+ W +     I  + N I   +GGTH +G R 
Sbjct: 112 TNKTAVNQVFHFNVQRDDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRS 168

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  I+   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 169 ALTRNLNNYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 228

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            VE  +   F  +L+++P EA  ++  +I+
Sbjct: 229 AVEQEMGKYFADFLLEHPNEAKAVVGKMID 258


>gi|194395082|gb|ACF60175.1| gyrase B subunit [Enterobacter sp. ECC_113]
 gi|194395086|gb|ACF60177.1| gyrase B subunit [Enterobacter sp. ECC_48]
 gi|194395096|gb|ACF60182.1| gyrase B subunit [Enterobacter sp. ECC_41]
 gi|194395104|gb|ACF60186.1| gyrase B subunit [Enterobacter sp. ECC_9]
 gi|194395116|gb|ACF60192.1| gyrase B subunit [Enterobacter sp. ECC_24]
 gi|194395128|gb|ACF60198.1| gyrase B subunit [Enterobacter sp. ECC_20]
 gi|194395136|gb|ACF60202.1| gyrase B subunit [Enterobacter sp. ECC_60]
 gi|194395142|gb|ACF60205.1| gyrase B subunit [Enterobacter sp. ECC_152]
 gi|194395146|gb|ACF60207.1| gyrase B subunit [Enterobacter sp. ECC_146]
 gi|194395154|gb|ACF60211.1| gyrase B subunit [Enterobacter sp. ECC_148]
 gi|194395168|gb|ACF60218.1| gyrase B subunit [Enterobacter sp. ECC_73]
 gi|194395176|gb|ACF60222.1| gyrase B subunit [Enterobacter sp. ECC_85]
 gi|194395178|gb|ACF60223.1| gyrase B subunit [Enterobacter sp. ECC_80]
 gi|194395180|gb|ACF60224.1| gyrase B subunit [Enterobacter cloacae]
          Length = 139

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/147 (34%), Positives = 80/147 (54%), Gaps = 8/147 (5%)

Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184
              S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +
Sbjct: 1   EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIY 60

Query: 185 SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244
             G+P +PL          GT + F P  + F +   F+   L K  +  ++L+  V   
Sbjct: 61  QHGVPEAPLAVTGDTEK-TGTMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIR 119

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKT 271
               ++  E       + F++ GG+K 
Sbjct: 120 LRDKRDNKE-------DHFHYEGGIKA 139


>gi|194395084|gb|ACF60176.1| gyrase B subunit [Enterobacter sp. ECC_72]
 gi|194395090|gb|ACF60179.1| gyrase B subunit [Enterobacter sp. ECC_66]
 gi|194395092|gb|ACF60180.1| gyrase B subunit [Enterobacter sp. ECC_98]
 gi|194395110|gb|ACF60189.1| gyrase B subunit [Enterobacter sp. ECC_11]
 gi|194395114|gb|ACF60191.1| gyrase B subunit [Enterobacter sp. ECC_2]
 gi|194395120|gb|ACF60194.1| gyrase B subunit [Enterobacter sp. ECC_93]
 gi|194395124|gb|ACF60196.1| gyrase B subunit [Enterobacter sp. ECC_34]
 gi|194395126|gb|ACF60197.1| gyrase B subunit [Enterobacter sp. ECC_13]
 gi|194395134|gb|ACF60201.1| gyrase B subunit [Enterobacter sp. ECC_124]
 gi|194395138|gb|ACF60203.1| gyrase B subunit [Enterobacter sp. ECC_36]
 gi|194395162|gb|ACF60215.1| gyrase B subunit [Enterobacter sp. ECC_1]
 gi|194395166|gb|ACF60217.1| gyrase B subunit [Enterobacter sp. ECC_25]
 gi|194395174|gb|ACF60221.1| gyrase B subunit [Enterobacter sp. ECC_103]
          Length = 139

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/147 (35%), Positives = 82/147 (55%), Gaps = 8/147 (5%)

Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184
              S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +
Sbjct: 1   EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIY 60

Query: 185 SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244
             G+P +PL       +K GT + F P  + F +   F+   L K  +  ++L+  V   
Sbjct: 61  QHGVPDAPLAVTGDT-DKTGTMVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIR 119

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKT 271
               ++  E       + F++ GG+K 
Sbjct: 120 LRDKRDNKE-------DHFHYEGGIKA 139


>gi|115500950|dbj|BAF34145.1| B subunit gyrase [Azomonas insignis]
          Length = 198

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/208 (32%), Positives = 109/208 (52%), Gaps = 13/208 (6%)

Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198
           AGG+FD+++Y++ GGLHGVG+SVVNALS+EL +TV R   ++ Q +  G+P +PL    +
Sbjct: 1   AGGRFDDNSYKVYGGLHGVGVSVVNALSEELLLTVRRDGKVWEQVYKHGVPQAPLAAIGE 60

Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258
                GT I F+P  + F +   F    L K  +  ++L+  V      ++         
Sbjct: 61  TEGA-GTEIRFKPSAETFKNIH-FSWDILAKRLRELSFLNSGVGILLRDER-------TG 111

Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITS 317
           ++E F + GGLK +++    N+++++         + G     VE A+ W +  N  I  
Sbjct: 112 KEELFKYEGGLKAFVEYLNTNKTIVNQIFHFNIQREDGV---GVEVALQWNDGFNENILC 168

Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKY 345
           + N I   +GGTH +G R ALT  +  Y
Sbjct: 169 FTNNIPQRDGGTHLAGFRSALTPNLNNY 196


>gi|50871504|emb|CAF74824.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 283

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 83/270 (30%), Positives = 129/270 (47%), Gaps = 15/270 (5%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+EL +T+ R+  ++ Q +  G+P +PL     V    GT I FRP P  F 
Sbjct: 1   GVSVVNALSEELLLTIRREGKVWEQLYRHGVPQAPLTAVG-VTEGSGTEIHFRPSPDTFQ 59

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL  ++    
Sbjct: 60  NIH-FSWDILAKRLRELSFLNSGVGIVLRDERSAKE-------ELFKYEGGLSAFVAYLN 111

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++           G     VE A+ W +     I  + N I   +GGTH +G R 
Sbjct: 112 TNKTAVNQVFHFNVQRDDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRS 168

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  IS   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 169 ALTRNLNNYIEQEGLAKKHKISTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 228

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            VE  +   F  +L+++P EA  ++  +I+
Sbjct: 229 AVEQEMGKYFGDFLLEHPNEAKAVVGKMID 258


>gi|291196193|emb|CBG14485.1| DNA gyrase subunit B [Pseudomonas meliae]
          Length = 266

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 77/269 (28%), Positives = 128/269 (47%), Gaps = 15/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+I F+P    F +
Sbjct: 1   VSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDTTGTQIHFKPSADTFKN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++           G     VE A+ W +     +  + N I   +GGTH  G R A
Sbjct: 112 NKTPVNQVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 VEQEMGKYFSDFLLENPNEAKAVVGKMID 257


>gi|110224847|emb|CAJ29740.1| DNA gyrase subunit B [Pseudomonas frederiksbergensis]
          Length = 283

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 79/270 (29%), Positives = 130/270 (48%), Gaps = 15/270 (5%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+EL +TV R   I+ Q +  G+P  P++   +     GT+I F+P    F 
Sbjct: 1   GVSVVNALSEELVLTVRRSGKIWEQTYIHGVPKEPMKIVGE-SETTGTQIHFKPSDLTFK 59

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++   
Sbjct: 60  NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 111

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G R 
Sbjct: 112 TNKTPVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 168

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 169 ALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 228

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 AVEQEMGKYFSDFLLENPNEAKLVVGKMID 258


>gi|167995613|gb|ACA13642.1| GyrB [Thalassospira sp. MCCC 1A02411]
          Length = 306

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 95/315 (30%), Positives = 150/315 (47%), Gaps = 19/315 (6%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------RNKRGTRITFRPDPKIFG 217
           ALS  L + + R       +FS G  + PLE               GT +TF PD +IF 
Sbjct: 1   ALSTLLKLRIWRNGKEHYMEFSGGDAIKPLEVVGDAPLTEDGTPLSGTEVTFYPDKEIFT 60

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F+ + L    +  A+L+  V      ++        P + + ++ GG++ +++   
Sbjct: 61  QT-EFNLSTLEHRLRELAFLNSGVILTLRDERSG-----EPTEIKLHYEGGIRAFVEYLD 114

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            +++    E  + + EK G    TVE A+ W +        + N I   +GGTH +G R 
Sbjct: 115 RSKARQIEECISIEGEKDGI---TVELALQWNDSYHETTLCFTNNIPQRDGGTHMAGFRA 171

Query: 337 ALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA+ +   +   +    DD       ++SV + +P+F+ QTK KLVS + + 
Sbjct: 172 ALTRQINNYAQESGIAKREKVALSGDDAREGLTCVISVKVPDPKFSSQTKDKLVSSEVRP 231

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            VEN + D    +L ++P +A K++  V+E +  R   RK RE   RK A+    LPGKL
Sbjct: 232 VVENVVNDRLSQWLEEHPQDARKIVTKVVEAASAREAARKARELTRRKGALDISSLPGKL 291

Query: 454 ADCSQNIAHGTELFI 468
           ADC +  A   ELFI
Sbjct: 292 ADCQERDASKAELFI 306


>gi|66271248|gb|AAY43837.1| DNA gyrase subunit B [Vibrio sp. SW 9702]
          Length = 281

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 73/266 (27%), Positives = 131/266 (49%), Gaps = 13/266 (4%)

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+++ +T+ R   I +Q +  G P +PL       ++ GT+I F P  + F +   
Sbjct: 1   VNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETFTN-IE 58

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F    L K  +  ++L+  V      ++E        + + F F GG++ +++    N++
Sbjct: 59  FHYDILAKRLRELSFLNSGVSIKLVDEREAD------KSDHFMFEGGIQAFVEHLNTNKT 112

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I  +IF    E++      VE A+ W +     I  + N I   +GGTH +G R ALTR
Sbjct: 113 PIIEKIFHFDFERED--GIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTR 170

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE+
Sbjct: 171 TLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVES 230

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIE 424
           ++ +    +L++NP EA  +   +I+
Sbjct: 231 SMGEKLSEFLIENPTEAKMVCSKIID 256


>gi|146189364|emb|CAL91150.1| DNA gyrase subunit beta [Sinorhizobium kostiense]
 gi|146189366|emb|CAL91151.1| DNA gyrase subunit beta [Sinorhizobium kostiense]
 gi|146189372|emb|CAL91154.1| DNA gyrase subunit beta [Sinorhizobium kostiense]
          Length = 224

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 74/233 (31%), Positives = 113/233 (48%), Gaps = 12/233 (5%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS  L + + R   I    F+ G+  SPL       +  GT +TF 
Sbjct: 1   SGGLHGVGVSVVNALSTSLKLKIRRGGKIHEMSFTHGVADSPLTVTGDAGSNTGTEVTFL 60

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   FD A L    +  A+L+  V+   +  +    +      EE  + GGL+
Sbjct: 61  PSEQTFSN-VEFDYATLEHRLRELAFLNSGVRIVLTDKRHSDIRR-----EELMYDGGLE 114

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGT 329
            ++      +  +  +  + + EK G    TVE A+ W +   E    + N I   +GGT
Sbjct: 115 AFVAYLDRAKKPLVHKPVSIRGEKDGI---TVEVAMWWNDSYHENVLCFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
           H +G R ALTR I  YA+ +    K  +S+  DD       +LSV + +P+F+
Sbjct: 172 HMAGFRAALTRQITSYADTSGITKKEKVSLTGDDCREGLTAVLSVKVPDPKFS 224


>gi|146189396|emb|CAL91166.1| DNA gyrase subunit beta [Agrobacterium rubi]
          Length = 224

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/233 (28%), Positives = 109/233 (46%), Gaps = 12/233 (5%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS  L + + R   I    F+ G+   PL+   +   + GT +TF 
Sbjct: 1   SGGLHGVGVSVVNALSVWLKLRIRRNGKIHEISFTHGVADGPLKIVGEYEGRSGTEVTFL 60

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
              + F     +  A L    +  A+L+  V+   +  +    K     +EE  + GGL 
Sbjct: 61  ASTETF-TMTEYTYATLEHRLRELAFLNSGVRILLTDKRHSDIK-----QEEMLYDGGLA 114

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            ++Q    ++  +  +      EK G    TVE A+ W +     +  + N I   +GGT
Sbjct: 115 AFVQYLDRSKKPLVDKPVYIIGEKDGI---TVEVAMWWNDTYHENMLCFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFA 380
           H +G R ALTR +  YA+ +   +   +    +D       +LSV + +P+F+
Sbjct: 172 HMAGFRGALTRQVTSYADSSGITKREKVSLQGEDCREGLTAVLSVKVPDPKFS 224


>gi|291196211|emb|CBG14503.1| DNA gyrase subunit B [Pseudomonas otitidis]
          Length = 267

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 78/270 (28%), Positives = 131/270 (48%), Gaps = 16/270 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +T+ R   ++ Q +  G+P   L    +  +  GT + F+   + F +
Sbjct: 1   VSVVNALSEELRLTIRRAGQVWEQIYRHGVPQFALRAVGET-DGTGTEVHFKASAETFTN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGLK +++    
Sbjct: 60  IH-FSWDILAKRLRELSFLNSGVGILLRDERSGKE-------EMFKYEGGLKAFVEYLNT 111

Query: 279 NRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           N+++++       + E+ G     VE A+ W +     I  + N I   +GGTH +G R 
Sbjct: 112 NKTIVNEVFHFNIQREEDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRS 168

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  I+   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 169 ALTRHLNNYIEQEGLAKKYKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 228

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 AVEQEMGKYFADFLLENPNEAKAVVGKMID 258


>gi|73666157|gb|AAZ79755.1| gyrase B [Salmonella enterica subsp. enterica serovar Livingstone]
          Length = 269

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 88/279 (31%), Positives = 140/279 (50%), Gaps = 14/279 (5%)

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ G
Sbjct: 1   RFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEG 53

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   +
Sbjct: 54  GIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRD 110

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+  TK
Sbjct: 111 GGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSHTK 170

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTA 443
            KLVS + +  VE  + +    YL++NP +A  ++  +I+        RR +    RK A
Sbjct: 171 DKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGA 230

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           +    LPGKLADC +     +EL++VEGDSAGGSAKQ R
Sbjct: 231 LDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGR 269


>gi|210062272|gb|ACJ06185.1| GyrB [Aeromonas caviae]
          Length = 291

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 88/303 (29%), Positives = 148/303 (48%), Gaps = 16/303 (5%)

Query: 168 ELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARL 227
           +L +T+ R   ++ Q +  G P +PL++        GT + F P P IF D   F    L
Sbjct: 1   KLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEIL 58

Query: 228 LKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEI 287
            K  +  ++L+  V      +++  E         F + GG+K +++   +N++ I  ++
Sbjct: 59  AKRLRELSFLNSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKV 111

Query: 288 FTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYA 346
           F   TE+ G     VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y 
Sbjct: 112 FHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNNYM 168

Query: 347 ELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF 404
           +      K   +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +  
Sbjct: 169 DKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKL 228

Query: 405 DHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHG 463
             +L++NP +A  ++  +I+ +  R   RK RE   RK A+    LPGKLAD  +     
Sbjct: 229 ADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAXLPGKLADWQEKDPAL 288

Query: 464 TEL 466
           +EL
Sbjct: 289 SEL 291


>gi|291464150|gb|ADE05600.1| DNA gyrase subunit B [Thalassospira tepidiphila]
          Length = 306

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 99/315 (31%), Positives = 150/315 (47%), Gaps = 19/315 (6%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------RNKRGTRITFRPDPKIFG 217
           ALS  L + V R       +FS G  + PLE               GT +TF PD +IF 
Sbjct: 1   ALSTLLKLRVWRNGKEHYMEFSGGDAIKPLEVVGDAPLTADGTPLSGTEVTFYPDAEIFT 60

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               FD   L    +  A+L+  V      ++        P + + ++ GG++ +++   
Sbjct: 61  -MTDFDLPTLEHRLRELAFLNSGVILTLRDERSG-----EPTEMKLHYEGGIRAFVEYLD 114

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++    E    + EK G    TVE A+ W +        + N I   +GGTH +G R 
Sbjct: 115 RNKARQIEEAICIEGEKDGI---TVEVALQWNDSYHETTLCFTNNIPQRDGGTHMAGFRA 171

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA+ +    K  +++  DD       ++SV + +P+F+ QTK KLVS + + 
Sbjct: 172 ALTRQINNYAQESGIAKKEKVALSGDDAREGLSCVISVKVPDPKFSSQTKDKLVSSEVRP 231

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            VEN + D    +L ++P +A K++  V+E +  R   RK RE   RK A+    LPGKL
Sbjct: 232 VVENIVNDKLAQWLEEHPQDARKIVSKVVEAASAREAARKARELTRRKGALDISSLPGKL 291

Query: 454 ADCSQNIAHGTELFI 468
           ADC +  A   ELFI
Sbjct: 292 ADCQERDASKAELFI 306


>gi|291196185|emb|CBG14476.1| DNA gyrase subunit B [Pseudomonas lutea]
          Length = 266

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 76/269 (28%), Positives = 129/269 (47%), Gaps = 15/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+ L++TV R   ++ Q +  G+P  P++   +     GT I F+P  + F +
Sbjct: 1   VSVVNALSEVLNLTVRRSGKVWEQTYVHGVPQEPMQIVGE-SETTGTEIHFKPSSETFKN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G R A
Sbjct: 112 NKTPVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 VEQEMGKYFSDFLLENPNEAKAVVGKMID 257


>gi|321453493|gb|EFX64722.1| hypothetical protein DAPPUDRAFT_333898 [Daphnia pulex]
          Length = 407

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/342 (17%), Positives = 112/342 (32%), Gaps = 31/342 (9%)

Query: 64  MYIGGTDEKALHHLFSEVIDNAMDEVIAGY-ANLIEVSLDG-NGFLTVVDNGRGIPVENH 121
           MY        L  +F E++ NA+         + +++ +D     +T   NG+GIP+  H
Sbjct: 64  MY-----TPGLWKIFDEILINAVKNKDRDPEMDTLKIDIDPIKNVITFYYNGKGIPIVKH 118

Query: 122 PKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFS 181
            +        +I   L       +    ++GGL+  GI + N  S    +  A  +    
Sbjct: 119 EEQ-KTFIPSMIFDPLLPSFNCTDEEETVTGGLNCYGIKLANIFSTAFELETASTDLCLR 177

Query: 182 QK--FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLLKMTQSKAYL 237
            K  ++  + ++ +   E       T+IT+ PD   F          A L +     A  
Sbjct: 178 FKQTWTDNMTIAGIPVVEPYSGPNYTKITYSPDFDKFQMDLLNRDTIALLSRRVVEVAAS 237

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V    +                       K Y+   L+ +            E    
Sbjct: 238 TPGVNVYLNDKPLPI--------------NNFKEYVDLCLKGKVDRLGAQLKCVFEA--- 280

Query: 298 HRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGI--KKYAELTQNKRAI 355
                E A+   E   +  S  N   T +GG H   +   +TR +         ++K  I
Sbjct: 281 VNERWEIAVVASEHGFQQISLANKFCTTKGGLHVEYITERVTRYLFENLKRRNKRDKTGI 340

Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
            +    +    +  ++  I  P F   +K +L       +VE
Sbjct: 341 HVHPQTIRKHIMVFVNCSIVSPIFKDLSKERLQGNFLYTSVE 382


>gi|167995549|gb|ACA13610.1| GyrB [Thalassospira sp. MCCC 1A01013]
 gi|167995551|gb|ACA13611.1| GyrB [Thalassospira sp. MCCC 1A01017]
 gi|167995617|gb|ACA13644.1| GyrB [Thalassospira sp. MCCC 1A02753]
 gi|167995619|gb|ACA13645.1| GyrB [Thalassospira sp. MCCC 1A02758]
 gi|167995621|gb|ACA13646.1| GyrB [Thalassospira sp. MCCC 1A02767]
 gi|167995623|gb|ACA13647.1| GyrB [Thalassospira sp. MCCC 1A02785]
 gi|167995627|gb|ACA13649.1| GyrB [Thalassospira sp. MCCC 1A02843]
 gi|167995629|gb|ACA13650.1| GyrB [Thalassospira sp. MCCC 1A02866]
 gi|167995631|gb|ACA13651.1| GyrB [Thalassospira sp. MCCC 1A02873]
 gi|167995633|gb|ACA13652.1| GyrB [Thalassospira sp. MCCC 1A02878]
 gi|167995637|gb|ACA13654.1| GyrB [Thalassospira sp. MCCC 1A02921]
 gi|167995639|gb|ACA13655.1| GyrB [Thalassospira sp. MCCC 1A02935]
          Length = 306

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 99/315 (31%), Positives = 153/315 (48%), Gaps = 19/315 (6%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------RNKRGTRITFRPDPKIFG 217
           ALS  L + + R       +FS G  + PLE           +   GT +TF PD +IF 
Sbjct: 1   ALSTLLKLRIWRNGKEHYMEFSGGDAIKPLEIVGDAPMTAEGKPLTGTEVTFYPDAEIFT 60

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F+   L    +  A+L+  V      ++     +G P + + ++ GG++ +++   
Sbjct: 61  -MTEFNLPTLEHRLRELAFLNSGVILTLRDER-----HGEPVETKLHYEGGIRAFVEYLD 114

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++    E  T   EK G    TVE ++ W +        + N I   +GGTH +G R 
Sbjct: 115 RNKAPQIEEPITIVGEKDGI---TVEVSLQWNDSYHETTLCFTNNIPQRDGGTHMAGFRA 171

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA+ +    K  +S+  DD       ++SV + +P+F+ QTK KLVS + + 
Sbjct: 172 ALTRQINSYAQESGIVKKEKVSLSGDDAREGLTCVISVKVPDPKFSSQTKDKLVSSEVRP 231

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            VEN + D    +L ++P +A K++  V+E +  R   RK RE   RK A+    LPGKL
Sbjct: 232 VVENIVNDRLQQWLEEHPQDARKIVTKVVEAASAREAARKARELTRRKGALDISSLPGKL 291

Query: 454 ADCSQNIAHGTELFI 468
           ADC +  A   ELFI
Sbjct: 292 ADCQERDASKAELFI 306


>gi|146189384|emb|CAL91160.1| DNA gyrase subunit beta [Rhizobium gallicum]
          Length = 224

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 114/233 (48%), Gaps = 12/233 (5%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS  L + + RQ  I    F+ G+  +PL+   +  +  GT ++F 
Sbjct: 1   SGGLHGVGVSVVNALSVWLKLKIRRQGKIHEMSFTHGVADAPLKVTGEAGSDTGTEVSFM 60

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P    F     FD   L    +  A+L+  V+   +  +    K     +EE  + GGL+
Sbjct: 61  PSTGTF-TMTDFDYGTLEHRLRELAFLNSGVRILLTDKRHSDIK-----QEEMRYDGGLE 114

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGT 329
            ++      +  +  +  + + EK G    TVE A+ W +   E    + N I   +GGT
Sbjct: 115 AFVSYLDRAKKPLVDKPVSIRGEKDGI---TVEVAMWWNDSYHENVLCFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
           H +G R ALTR +  YA+ +    K  +++  +D       +LSV + +P+F+
Sbjct: 172 HMAGFRAALTRQVVSYADSSGITKKEKVTLQGEDCREGLTAVLSVKVPDPKFS 224


>gi|194395094|gb|ACF60181.1| gyrase B subunit [Enterobacter sp. ECC_76]
 gi|194395112|gb|ACF60190.1| gyrase B subunit [Enterobacter sp. ECC_15]
 gi|194395148|gb|ACF60208.1| gyrase B subunit [Enterobacter sp. ECC_125]
          Length = 139

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/147 (34%), Positives = 83/147 (56%), Gaps = 8/147 (5%)

Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184
              S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +
Sbjct: 1   EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQLY 60

Query: 185 SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244
           + G+P +PL       +K GT + F P  + F +   F+   L K  +  ++L+  V   
Sbjct: 61  THGVPQAPLAVTGDT-DKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIR 119

Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKT 271
               ++  E       + F++ GG++ 
Sbjct: 120 LRDKRDNRE-------DHFHYEGGIRA 139


>gi|321464200|gb|EFX75209.1| hypothetical protein DAPPUDRAFT_323396 [Daphnia pulex]
          Length = 451

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 60/344 (17%), Positives = 111/344 (32%), Gaps = 28/344 (8%)

Query: 69  TDEKALHHLFSEVIDNAMDEVIAG-YANLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPN 126
           T    L+ +F E++ NA D  I     + I V +D  +  + +  NG GIPV    +   
Sbjct: 111 TYVPGLYQIFDELLVNAADNKIKDMSMDTIRVDIDLKSNIIKIFYNGEGIPV-VEKEEAK 169

Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDE--LHVTVARQNTIFSQKF 184
                +I  +L       +   E++G  +  G  + N  S    L +    Q   F Q++
Sbjct: 170 MYVPSLIFCSLQPSFNICDEEEEVTGHRNCFGAKLANMFSTSFVLEIASKEQGQRFKQEW 229

Query: 185 SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK--AGFDAARLLKMTQSKAYLSGRVK 242
              +    + +         T ITF  D + F          A   +     A  +  VK
Sbjct: 230 RTNMTKDKIPEILPYSGSSFTEITFSLDMEKFKMDALDRDILAVFSRRAVEMAACTRGVK 289

Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
              + +                       Y+   L              +E       + 
Sbjct: 290 VFLNGN--------------LLPISNFTDYVNLCLRGEKDCFGRQLECVSE---VISDSW 332

Query: 303 EWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDL 362
           E A+A      ++ S+ N   T EGG H   +   +   I+ +  + + K   S+    +
Sbjct: 333 EIAVASSNRFQQM-SFANKYATTEGGRHVFHISNHV---IEHFRRMLKEKVGTSLGKHTV 388

Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406
                  ++  ++   F    K KL+    + ++    R  F  
Sbjct: 389 RKHIWVFVNCSLKNSTFKSPAKAKLMDASLEMSMCTPSRAFFTK 432


>gi|39837164|emb|CAE84977.1| DNA gyrase subunit B [Pseudomonas stutzeri]
          Length = 283

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 79/270 (29%), Positives = 131/270 (48%), Gaps = 15/270 (5%)

Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217
           G+SVVNALS+EL +T+ R+  ++ Q +  G+P +PL    +  +  GT+I F+P  + F 
Sbjct: 1   GVSVVNALSEELLLTIRREGKVWEQLYRHGVPEAPLAAVGET-DTSGTQIHFKPSAETFQ 59

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
           +   F    L K  +  ++L+  V      ++   E       E F + GGL  ++    
Sbjct: 60  NIH-FSWDILAKRLRELSFLNSGVGIVLRDERTAKE-------ELFKYEGGLSAFVAYLN 111

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++ ++           G     VE A+ W +     I  + N I   +GGTH +G R 
Sbjct: 112 TNKTAVNQVFHFNVQRDDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRS 168

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  I+   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 169 ALTRNLNNYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 228

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            VE  +   F  +L+++P EA  ++  +I+
Sbjct: 229 AVEQEMGKYFADFLLEHPNEAKAVVGKMID 258


>gi|224174510|emb|CAR92673.1| DNA gyrase, B subunit [Bradyrhizobium sp. LMG 10727]
 gi|224174512|emb|CAR92674.1| DNA gyrase, B subunit [Bradyrhizobium sp. LMG 15269]
          Length = 222

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 115/231 (49%), Gaps = 10/231 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS +L + + R N     +F+ G  ++PL+       KRGT +TF 
Sbjct: 1   SGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAHGDAVAPLKIVGDAPGKRGTEVTFL 60

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
              + F +   +D A L    +  A+L+  V    S  +   EK      EE ++ GG++
Sbjct: 61  ASTQTFKN-VEYDFATLEHRLRELAFLNSGVNIILSDTRHAVEKR-----EEMHYSGGVE 114

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGT 329
            +++    N+  I       ++E  G     VE A+ W +   E    + N I   +GGT
Sbjct: 115 EFVKYLDRNKKAIVPAPIMVRSEANGI---GVEAALWWNDSYHENVLCFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFA 380
           H +G R ALTR +  YAE    K  I++  DD       +LSV + +P+F+
Sbjct: 172 HLAGFRGALTRQVNGYAEANAKKEKIALTGDDCREGLTAVLSVKVPDPKFS 222


>gi|224174530|emb|CAR92683.1| DNA gyrase, B subunit [Bradyrhizobium sp. LMG 11797]
 gi|224174532|emb|CAR92684.1| DNA gyrase, B subunit [Bradyrhizobium sp. LMG 8300]
 gi|224174534|emb|CAR92685.1| DNA gyrase, B subunit [Blastobacter denitrificans]
          Length = 222

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 118/231 (51%), Gaps = 10/231 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS +L + + R++     +F+ G  ++PL+   + + +RGT +TF 
Sbjct: 1   SGGLHGVGVSVVNALSSKLQLRIWREDKEHLIEFAHGDAVAPLKVVGEAQGRRGTEVTFL 60

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
              + F     +D A L    +  A+L+  V    S  +   EK      EE ++ GG++
Sbjct: 61  ASTETF-KMVEYDYATLEHRLRELAFLNSGVHIVLSDMRHAVEKR-----EEMFYSGGVE 114

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGT 329
            +++    N+  I       ++E  G    TVE A+ W +   E    + N I   +GGT
Sbjct: 115 EFVRYLDRNKKAIVPSPIMVRSEVNGI---TVEAALWWNDSYHENVLCFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFA 380
           H +G R ALTR +  YA+    K  I++  DD       +LSV + +P+F+
Sbjct: 172 HLAGFRGALTRQVNGYADAHAKKEKIALTGDDCREGLTAVLSVKVPDPKFS 222


>gi|167995569|gb|ACA13620.1| GyrB [Thalassospira sp. MCCC 1A01166]
 gi|167995571|gb|ACA13621.1| GyrB [Thalassospira sp. MCCC 1A01167]
          Length = 306

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 100/315 (31%), Positives = 155/315 (49%), Gaps = 19/315 (6%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------RNKRGTRITFRPDPKIFG 217
           ALS  L + + R       +FS G  + PLE               GT +TF PD +IF 
Sbjct: 1   ALSTLLKLRIWRNGKEHYMEFSGGDAIKPLEVTGDAPLTADGTPLSGTEVTFYPDGEIFT 60

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               FD A L    +  A+L+  V      ++     +G P + + ++ GG++ +++   
Sbjct: 61  QL-EFDLATLEHRLRELAFLNSGVILTLRDER-----HGEPVETKLHYEGGIRAFVEYLD 114

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++    E  + + EK G    TVE A+ W +    +   + N I   +GGTH +G R 
Sbjct: 115 RNKTRQIEESISIEGEKDGI---TVEVALQWNDSYHEQTLCFTNNIPQRDGGTHMAGFRA 171

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA+ +    K  +++  DD       ++SV + +P+F+ QTK KLVS + + 
Sbjct: 172 ALTRQINNYAQESGIAKKEKVALSGDDAREGLSCVISVKVPDPKFSSQTKDKLVSSEVRP 231

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            VEN + D    +L ++P +A K++  V+E +  R   RK RE   RK A+    LPGKL
Sbjct: 232 VVENIVNDKLQQWLEEHPADARKIVTKVVEAASAREAARKARELTRRKGALDISSLPGKL 291

Query: 454 ADCSQNIAHGTELFI 468
           ADC +  A   ELFI
Sbjct: 292 ADCQERDASKAELFI 306


>gi|291196153|emb|CBG14444.1| DNA gyrase subunit B [Pseudomonas extremorientalis]
 gi|291196179|emb|CBG14471.1| DNA gyrase subunit B [Pseudomonas libanensis]
          Length = 266

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 78/269 (28%), Positives = 129/269 (47%), Gaps = 15/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +TV R   I+ Q +  G+P  P++         GT+I F+P  + F +
Sbjct: 1   VSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGD-SETTGTQIHFKPSAETFKN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G R A
Sbjct: 112 NKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 VEQEMGKYFSDFLLENPNEAKLVVGKMID 257


>gi|291196232|emb|CBG14519.1| DNA gyrase subunit B [Pseudomonas poae]
          Length = 266

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 78/269 (28%), Positives = 129/269 (47%), Gaps = 15/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +TV R   I+ Q +  G+P  P++         GT+I F+P  + F +
Sbjct: 1   VSVVNALSEELILTVRRAGKIWEQTYVHGVPQEPMKIVGD-SETTGTQIHFKPSDETFKN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G R A
Sbjct: 112 NKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRNLNNYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 VEQEMGKYFSDFLLENPNEAKLVVGKMID 257


>gi|291196248|emb|CBG14534.1| DNA gyrase subunit B [Pseudomonas simiae]
          Length = 266

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 78/269 (28%), Positives = 129/269 (47%), Gaps = 15/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +TV R   I+ Q +  G+P  P++         GT+I F+P  + F +
Sbjct: 1   VSVVNALSEELILTVRRSGKIWEQTYVHGVPKEPMKIVGD-SETTGTQIHFKPSAETFKN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G R A
Sbjct: 112 NKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 VEQEMGKYFSDFLLENPNEAKLVVGKMID 257


>gi|291196246|emb|CBG14532.1| DNA gyrase subunit B [Pseudomonas salomonii]
          Length = 266

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 78/269 (28%), Positives = 129/269 (47%), Gaps = 15/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +TV R   I+ Q +  G+P  P++         GT+I F+P  + F +
Sbjct: 1   VSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGD-SESTGTQIHFKPSAETFKN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G R A
Sbjct: 112 NKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 VEQEMGKYFSDFLLENPNEAKLVVGKMID 257


>gi|223674696|gb|ACN13044.1| DNA gyrase subunit B [Yersinia frederiksenii]
          Length = 176

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 97/187 (51%), Gaps = 12/187 (6%)

Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204
           N++Y++SGGLHGVG+SVVNALS++L + + R+  +  Q +  G+P +PL+   +  ++ G
Sbjct: 1   NTSYKVSGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYRMGVPQAPLKVVGET-DQTG 59

Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264
           T + F P  + F +   F    L K  +  ++L+  V       +   E       + F+
Sbjct: 60  TTVRFWPSFETFTNNTEFQYEILAKRLRELSFLNSGVSIKLRDKRNDRE-------DHFH 112

Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323
           + GG+K +++   +N++ I  ++F   T K       VE A+ W +     I  + N I 
Sbjct: 113 YEGGIKAFVEYLNKNKTPIHPKVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIP 169

Query: 324 TDEGGTH 330
             +GGTH
Sbjct: 170 QRDGGTH 176


>gi|281331934|emb|CAZ39962.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 236

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 72/245 (29%), Positives = 124/245 (50%), Gaps = 13/245 (5%)

Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212
           GLHGVG+SVVNALS +L V V +    + Q+FS G  ++PL K E     RGT + F P 
Sbjct: 1   GLHGVGVSVVNALSQKLLVDVFQGGFHYQQEFSNGAAVTPLAKLESTTK-RGTTVRFWPS 59

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
              F D   +    L +  +  ++L+  VK   + ++          +++F++ GG++++
Sbjct: 60  TVAFHDNVEYHYDILARRLRELSFLNSGVKIVLADERGD------GRRDDFHYEGGIRSF 113

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331
           ++   + ++ +   + +   E        V+ A+ W +     +  + N I   +GGTH 
Sbjct: 114 VEHLAQLKTPLHPNVISVTGEHNNI---VVDVALQWTDSYQETMYCFTNNIPQKDGGTHL 170

Query: 332 SGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389
           +G R ALTR +  Y E     +   I++  DD+    + +LSV + +P F+ QTK KLVS
Sbjct: 171 AGFRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVS 230

Query: 390 LDAQR 394
            D + 
Sbjct: 231 SDVRP 235


>gi|259156939|gb|ACV95899.1| gyrase subunit B [Hamiltonella endosymbiont of Bemisia tabaci]
 gi|259156941|gb|ACV95900.1| gyrase subunit B [Hamiltonella endosymbiont of Bemisia tabaci]
 gi|259156945|gb|ACV95902.1| gyrase subunit B [Hamiltonella endosymbiont of Bemisia tabaci]
 gi|259156949|gb|ACV95904.1| gyrase subunit B [Hamiltonella endosymbiont of Bemisia tabaci]
 gi|259156951|gb|ACV95905.1| gyrase subunit B [Hamiltonella endosymbiont of Bemisia tabaci]
 gi|259156953|gb|ACV95906.1| gyrase subunit B [Hamiltonella endosymbiont of Bemisia tabaci]
          Length = 271

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 73/257 (28%), Positives = 125/257 (48%), Gaps = 14/257 (5%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           +T++R+ +I  Q +  G P +PL+   K     GTR+ F P  K F ++  F    L K 
Sbjct: 1   LTISREGSIHQQTYVMGEPQAPLKVMGKT-ELTGTRVRFWPSMKTFTNQTEFQYDILAKR 59

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  ++L+  V  C    +   EK        F++ GG++ ++    +N++ I  ++F  
Sbjct: 60  LRELSFLNSGVFICLHDKRNDQEK-------HFHYEGGIQAFVTYLNKNKTPIHPKVFYF 112

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            T K       VE A+ W +     I  + N I   +GGTH  G R A+TR +  Y E  
Sbjct: 113 STVKDDI---GVEIALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRAAMTRTMNSYMEKE 169

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               K  I+   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    Y
Sbjct: 170 GFSKKSKINATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEY 229

Query: 408 LVQNPIEATKLLEWVIE 424
           L++NP +A  ++  +I+
Sbjct: 230 LLENPSDAKTIVNKIID 246


>gi|224174524|emb|CAR92680.1| DNA gyrase, B subunit [Bradyrhizobium sp. LMG 11807]
          Length = 222

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 115/231 (49%), Gaps = 10/231 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS +L + + R++      F+ G  ++PL+       KRGT +TF 
Sbjct: 1   SGGLHGVGVSVVNALSSKLELRIWREDKEHLIVFAHGDAVAPLQVVGDAPGKRGTEVTFL 60

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
              + F     +D A L    +  A+L+  V    S  +   EK      EE ++ GG++
Sbjct: 61  ASTETF-KIVEYDYATLEHRLRELAFLNSGVHIILSDMRHPVEKR-----EEMFYSGGVE 114

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGT 329
            +++    N+  I       ++E  G    TVE A+ W +   E    + N I   +GGT
Sbjct: 115 EFVKYLDRNKKAIVPNPIMVRSEANGI---TVEAALWWNDSYHENVLCFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFA 380
           H +G R ALTR +  YAE    K  I++  DD       +LSV + +P+F+
Sbjct: 172 HLAGFRGALTRQVNGYAEANAKKEKIALTGDDCREGLTAVLSVKVPDPKFS 222


>gi|328813923|gb|AEB52077.1| GyrB [Enterobacter kobei]
          Length = 273

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 80/284 (28%), Positives = 136/284 (47%), Gaps = 15/284 (5%)

Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239
             Q +  G+P +PL    +  +  GT++ F P  + F +   F+   L K  +  ++L+ 
Sbjct: 1   HQQTYVHGVPQAPLAVTGET-DATGTQVRFWPSHETFTNVTEFEYDILAKRLRELSFLNS 59

Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299
            V       ++  E       + F++ GG+K +++   +N++ I   +F   TEK G   
Sbjct: 60  GVSIRLIDKRDGKE-------DHFHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKDGI-- 110

Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356
             VE A+ W +     I  + N I   +GGTH  G R A+TR +  Y +      K  +S
Sbjct: 111 -GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNAYMDKEGYSKKAKVS 169

Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416
              DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP +A 
Sbjct: 170 ATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLAEYLLENPTDAK 229

Query: 417 KLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459
            ++  +I+        RR +    RK A+    LPGKLADC + 
Sbjct: 230 IVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQER 273


>gi|167995553|gb|ACA13612.1| GyrB [Thalassospira sp. MCCC 1A01041]
 gi|167995565|gb|ACA13618.1| GyrB [Thalassospira sp. MCCC 1A01140]
 gi|167995641|gb|ACA13656.1| GyrB [Thalassospira sp. MCCC 1A03005]
 gi|167995643|gb|ACA13657.1| GyrB [Thalassospira sp. MCCC 1A03052]
 gi|167995645|gb|ACA13658.1| GyrB [Thalassospira sp. MCCC 1A03093]
          Length = 306

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 98/315 (31%), Positives = 152/315 (48%), Gaps = 19/315 (6%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------RNKRGTRITFRPDPKIFG 217
           ALS  L + + R       +FS G  + PLE           +   GT +TF PD +IF 
Sbjct: 1   ALSTLLKLRIWRNGKEHYMEFSGGDAIKPLEIVGDAPMTAEGKPLTGTEVTFYPDAEIFT 60

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F+   L    +  A+L+  V      ++     +G P + + ++ GG++ +++   
Sbjct: 61  -MTEFNLPTLEHRLRELAFLNSGVILTLRDER-----HGEPVETKLHYEGGIRAFVEYLD 114

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++    E      EK G    TVE ++ W +        + N I   +GGTH +G R 
Sbjct: 115 RNKAPQIEEPIAIVGEKDGI---TVEVSLQWNDSYHETTLCFTNNIPQRDGGTHMAGFRA 171

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA+ +    K  +S+  DD       ++SV + +P+F+ QTK KLVS + + 
Sbjct: 172 ALTRQINSYAQESGIVKKEKVSLSGDDAREGLTCVISVKVPDPKFSSQTKDKLVSSEVRP 231

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            VEN + D    +L ++P +A K++  V+E +  R   RK RE   RK A+    LPGKL
Sbjct: 232 VVENIVNDRLQQWLEEHPQDARKIVTKVVEAASAREAARKARELTRRKGALDISSLPGKL 291

Query: 454 ADCSQNIAHGTELFI 468
           ADC +  A   ELFI
Sbjct: 292 ADCQERDASKAELFI 306


>gi|291196197|emb|CBG14489.1| DNA gyrase subunit B [Pseudomonas migulae]
          Length = 266

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 78/269 (28%), Positives = 129/269 (47%), Gaps = 15/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS EL +TV R   I+ Q +  G+P  P++   +     GT+I F+P  + F +
Sbjct: 1   VSVVNALSKELILTVRRSGKIWEQTYVHGVPQEPMKIVGE-SETTGTQIHFKPSAETFKN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G R A
Sbjct: 112 NKTPVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 VEQEMGKYFSDFLLENPNEAKLVVGKMID 257


>gi|291196213|emb|CBG14505.1| DNA gyrase subunit B [Pseudomonas pachastrellae]
          Length = 266

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 78/269 (28%), Positives = 132/269 (49%), Gaps = 15/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS++L +T+ R   ++ Q +  G+P +PL +     +  GT+I F+P  + F  
Sbjct: 1   VSVVNALSEKLILTIRRHGKVWEQTYVHGVPQAPLAEVGDT-DSTGTQIHFKPSAETFSS 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++         + E F + GGL+ +++   +
Sbjct: 60  -ITFSWDILAKRLRELSFLNSGVGINLRDER-------TGKHELFRYEGGLRAFVEYLNQ 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ I+S        + G     VE A+ W +     I  + N I   +GGTH +G R A
Sbjct: 112 NKTSINSVFHFNLQREDGI---GVEVAMQWNDSFNESILCFTNNIPQRDGGTHLAGFRSA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRSLNSYIEQEGLLKKLKVNTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  YL++ P EA  ++  +I+
Sbjct: 229 VEQEMNKYFGDYLLEKPGEAKAVVGKMID 257


>gi|153875694|ref|ZP_02003380.1| topoisomerase B subunit [Beggiatoa sp. PS]
 gi|152067842|gb|EDN66620.1| topoisomerase B subunit [Beggiatoa sp. PS]
          Length = 337

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 82/359 (22%), Positives = 143/359 (39%), Gaps = 41/359 (11%)

Query: 52  LEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVD 111
           LE  + VR RPGMY G  +    + +  E++ NA+D  +AG A         N  + + D
Sbjct: 11  LELRQAVRKRPGMYFGDIESGGANTVVYEIVANAVDIFLAGLAKK-INIEVNNNNIIISD 69

Query: 112 NGRGIP-VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELH 170
           +G G P  +  P+  + + +E  LT  H     DN    I     G+G++V+NA S +L 
Sbjct: 70  DGPGFPFFKASPQDTSINLVEYYLTNFHNSPTADNHAPHIHILGRGLGLAVLNAASKKLA 129

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           +  +    +++Q F  G+ LSP   +       G++++   DP +F +        L K+
Sbjct: 130 IESSDGEKLWTQNFGEGMVLSPATHESG-NFPTGSKVSITLDPMVFDNHGPNSFE-LRKI 187

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT--YLQTKLENRSLISSEIF 288
                +L   +   +             EKE FY   GL    Y+  K     +   ++F
Sbjct: 188 FFEVVHLYPGLSIEF-------------EKECFYSNNGLVDLGYILLKKSASYMGMPKMF 234

Query: 289 TGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348
               +KKG        A+   +E  E  S+ N   + E G+H  GL              
Sbjct: 235 RFHYQKKGIEFQVA--ALGDSKEGTEFRSWVNGCASVENGSHAKGL-------------- 278

Query: 349 TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
                  S +  +     + ++ V + +P+FAG  +  L   +  + +E  L      +
Sbjct: 279 ------SSALRLNKWKPEIALIHVIMHDPKFAGPCRDALQMPEVLKVIEEKLTPEIKAF 331


>gi|66271244|gb|AAY43835.1| DNA gyrase subunit B [Vibrio sp. BS 9904]
          Length = 275

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 73/266 (27%), Positives = 131/266 (49%), Gaps = 13/266 (4%)

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+++ +T+ R   I +Q +  G P +PL       ++ GT+I F P  + F +   
Sbjct: 1   VNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETFTN-IE 58

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F    L K  +  ++L+  V      ++E        + + F F GG++ +++    N++
Sbjct: 59  FHYDILAKRLRELSFLNSGVSIKLVDEREAD------KSDHFMFEGGIQAFVEHLNTNKT 112

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I  +IF    E++      VE A+ W +     I  + N I   +GGTH +G R ALTR
Sbjct: 113 PIIEKIFHFDFERED--GIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTR 170

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE+
Sbjct: 171 TLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVES 230

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIE 424
           ++ +    +L++NP EA  +   +I+
Sbjct: 231 SMGEKLSEFLIENPTEAKMVCSKIID 256


>gi|325305358|gb|ADZ06027.1| DNA gyrase subunit B [Aeromonas veronii bv. veronii]
 gi|325305362|gb|ADZ06029.1| DNA gyrase subunit B [Aeromonas veronii bv. sobria]
 gi|325305364|gb|ADZ06030.1| DNA gyrase subunit B [Aeromonas veronii bv. sobria]
 gi|325305366|gb|ADZ06031.1| DNA gyrase subunit B [Aeromonas veronii bv. sobria]
 gi|325305368|gb|ADZ06032.1| DNA gyrase subunit B [Aeromonas veronii bv. sobria]
 gi|325305370|gb|ADZ06033.1| DNA gyrase subunit B [Aeromonas veronii bv. sobria]
 gi|325305372|gb|ADZ06034.1| DNA gyrase subunit B [Aeromonas veronii bv. sobria]
 gi|325305374|gb|ADZ06035.1| DNA gyrase subunit B [Aeromonas veronii bv. veronii]
 gi|325305376|gb|ADZ06036.1| DNA gyrase subunit B [Aeromonas veronii bv. sobria]
 gi|325305378|gb|ADZ06037.1| DNA gyrase subunit B [Aeromonas veronii bv. sobria]
 gi|325305380|gb|ADZ06038.1| DNA gyrase subunit B [Aeromonas veronii bv. sobria]
 gi|325305382|gb|ADZ06039.1| DNA gyrase subunit B [Aeromonas veronii bv. sobria]
 gi|325305384|gb|ADZ06040.1| DNA gyrase subunit B [Aeromonas veronii bv. sobria]
 gi|325305386|gb|ADZ06041.1| DNA gyrase subunit B [Aeromonas veronii bv. sobria]
 gi|325305396|gb|ADZ06046.1| DNA gyrase subunit B [Aeromonas veronii bv. veronii]
          Length = 287

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 90/298 (30%), Positives = 148/298 (49%), Gaps = 16/298 (5%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            ++ Q +  G P +PL++        GT + F P P IF D   F    L K  +  ++L
Sbjct: 2   HVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPAIFSDTL-FHYEILAKRLRELSFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+ G 
Sbjct: 60  NSGVSIRLQDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGI 112

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      K  
Sbjct: 113 ---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAK 169

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
            +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++NP +
Sbjct: 170 SAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGD 229

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVEG
Sbjct: 230 AKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEG 287


>gi|291196149|emb|CBG14440.1| DNA gyrase subunit B [Pseudomonas costantinii]
          Length = 266

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 78/269 (28%), Positives = 130/269 (48%), Gaps = 15/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +TV R   I+ Q +  G+P  P++   +     GT+I F+P  + F +
Sbjct: 1   VSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGE-SETTGTQIHFKPSDETFKN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G R A
Sbjct: 112 NKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 VEQEMGKYFSDFLLENPNEAKLVVGKMID 257


>gi|325305392|gb|ADZ06044.1| DNA gyrase subunit B [Aeromonas veronii bv. sobria]
          Length = 287

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 91/298 (30%), Positives = 149/298 (50%), Gaps = 16/298 (5%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            ++ Q +  G PL+PL++        GT + F P P IF D   F    L K  +  ++L
Sbjct: 2   HVYEQTYHLGEPLAPLKQIGDSTG-TGTEVRFWPSPAIFSDTL-FHYEILAKRLRELSFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+ G 
Sbjct: 60  NSGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGI 112

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      K  
Sbjct: 113 ---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAK 169

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
            +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++NP +
Sbjct: 170 SAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGD 229

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVEG
Sbjct: 230 AKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEG 287


>gi|325305360|gb|ADZ06028.1| DNA gyrase subunit B [Aeromonas allosaccharophila]
          Length = 287

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 89/298 (29%), Positives = 148/298 (49%), Gaps = 16/298 (5%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            ++ Q +  G P +PL++        GT + F P P IF D   +    L K  +  ++L
Sbjct: 2   HVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFTDTL-YHYEILAKRLRELSFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+ G 
Sbjct: 60  NSGVSIRLLDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGI 112

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      K  
Sbjct: 113 ---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAK 169

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
            +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++NP +
Sbjct: 170 SAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGD 229

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVEG
Sbjct: 230 AKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEG 287


>gi|257815596|gb|ACV70136.1| topoisomerase IV subunit B [Shigella flexneri 2a]
 gi|257815598|gb|ACV70137.1| topoisomerase IV subunit B [Shigella flexneri 2a]
 gi|257815600|gb|ACV70138.1| topoisomerase IV subunit B [Shigella flexneri 2a]
          Length = 137

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 63/138 (45%), Positives = 88/138 (63%), Gaps = 1/138 (0%)

Query: 436 REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495
           ++V RK       LPGKLADC+    + TELF+VEGDSAGGSAKQAR+R  QA++PL+GK
Sbjct: 1   KKVVRKKLTSGPALPGKLADCTAQGLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGK 60

Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLL 555
           ILN     S+++  +Q++ D+  A+G    S      LRY K+ I+ DAD DG HIA+LL
Sbjct: 61  ILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLL 119

Query: 556 LTFFYQEMYDLIEQKHLF 573
              F +    L++  H++
Sbjct: 120 CALFVKHFRALVKHGHVY 137


>gi|259156947|gb|ACV95903.1| gyrase subunit B [Hamiltonella endosymbiont of Bemisia tabaci]
          Length = 271

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 72/257 (28%), Positives = 124/257 (48%), Gaps = 14/257 (5%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           +T++R+ +I    +  G P +PL+   K     GTR+ F P  K F ++  F    L K 
Sbjct: 1   LTISREGSIHQXTYVMGEPQAPLKVMGKT-ELTGTRVRFWPSMKTFTNQTEFQYDILAKR 59

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  ++L+  V  C    +   EK        F++ GG++ ++    +N++ I  ++F  
Sbjct: 60  LRELSFLNSGVFICLHDKRNDQEK-------HFHYEGGIQAFVTYLNKNKTPIHPKVFYF 112

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            T K       VE A+ W +     I  + N I   +GGTH  G R A+TR +  Y E  
Sbjct: 113 STVKDDI---GVEIALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRAAMTRTMNSYMEKE 169

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               K  I+   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    Y
Sbjct: 170 GFSKKSKINATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEY 229

Query: 408 LVQNPIEATKLLEWVIE 424
           L++NP +A  ++  +I+
Sbjct: 230 LLENPSDAKTIVNKIID 246


>gi|8467995|dbj|BAA96596.1| putative topoisomerase II [Oryza sativa Japonica Group]
 gi|125569648|gb|EAZ11163.1| hypothetical protein OsJ_01012 [Oryza sativa Japonica Group]
          Length = 421

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 70/368 (19%), Positives = 118/368 (32%), Gaps = 46/368 (12%)

Query: 56  EPVRMRPGMYIGG----------------------TDEKALHHLFSEVIDNAMDEVIAGY 93
           E +  RP  YIG                       T    LH +F EV+ +A        
Sbjct: 29  ERILRRPDGYIGSPEKRSTQTFWINDGYYMVPREVTYRPGLHRIFDEVLVHAASNKRRDP 88

Query: 94  -ANLIEVSLDG-NGFLTVVDNGRGI-PVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150
             + + V +D     ++V  NGRG+ PVE   +       E+    LH   + D+     
Sbjct: 89  SMDTLSVEVDVVERSVSVFYNGRGVVPVELVDEERGVYAPEMFFGHLHDDDEEDDQNKAT 148

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQK--FSRGIPLSPLEKKEKVR-NKRGTRI 207
           + G  G G+ + N  S E  +  A    +   K  FS  +    +         +  T I
Sbjct: 149 NDGGGGYGVKLANLFSTEFIIETADGCRMKKYKQVFSENMGKKSVPHITDCNQGENWTII 208

Query: 208 TFRPDPKIFGDKA--GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265
           TF+PD   F            + K     A + G                          
Sbjct: 209 TFKPDLAGFNMTYLEEDHVTLMWKRVVDMAGILGDSVQVEWDGVR-------------LR 255

Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTD 325
                 Y++  +++     S     +  +K      V  +++  + + +  S+ N   T 
Sbjct: 256 INSFNDYVRLYIDSPVSDRSGAGFPRVYEKLNDWCEVCLSLS-DDGHFQQVSFVNGFETL 314

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           +GGTH   +   +T  +             +   DD+       L+V I  P F  QTK 
Sbjct: 315 KGGTHVDYVTELITTHLMNLLNEHY--EECNFNVDDVKRYLWVFLNVIIDNPTFDSQTKE 372

Query: 386 KLVSLDAQ 393
            L +   +
Sbjct: 373 TLTTPPGR 380


>gi|167995625|gb|ACA13648.1| GyrB [Thalassospira sp. MCCC 1A02803]
 gi|167995635|gb|ACA13653.1| GyrB [Thalassospira sp. MCCC 1A02898]
 gi|167995649|gb|ACA13660.1| GyrB [Thalassospira profundimaris]
          Length = 306

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 99/315 (31%), Positives = 150/315 (47%), Gaps = 19/315 (6%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------RNKRGTRITFRPDPKIFG 217
           ALS  L + V R       +FS G  + PLE               GT +TF PD +IF 
Sbjct: 1   ALSTLLKLRVWRNGKEHYMEFSGGDAIKPLEVVGDAPLTADGTPLSGTEVTFYPDAEIFT 60

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               FD   L    +  A+L+  V      ++        P + + ++ GG++ +++   
Sbjct: 61  -MTDFDLPTLEHRLRELAFLNSGVILTLRDERSG-----EPTETKLHYEGGIRAFVEYLD 114

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++    E    + EK G    TVE A+ W +        + N I   +GGTH +G R 
Sbjct: 115 RNKARQIEEAICIEGEKDGI---TVEVALQWNDSYHETTLCFTNNIPQRDGGTHMAGFRA 171

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA+ +    K  +++  DD       ++SV + +P+F+ QTK KLVS + + 
Sbjct: 172 ALTRQINNYAQESGIAKKEKVALSGDDAREGLSCVISVKVPDPKFSSQTKDKLVSSEVRP 231

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            VEN + D    +L ++P +A K++  V+E +  R   RK RE   RK A+    LPGKL
Sbjct: 232 VVENIVNDKLAQWLEEHPQDARKIVSKVVEAASAREAARKARELTRRKGALDISSLPGKL 291

Query: 454 ADCSQNIAHGTELFI 468
           ADC +  A   ELFI
Sbjct: 292 ADCQERDASKAELFI 306


>gi|167995541|gb|ACA13606.1| GyrB [Thalassospira xiamenensis]
          Length = 306

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 98/315 (31%), Positives = 151/315 (47%), Gaps = 19/315 (6%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------RNKRGTRITFRPDPKIFG 217
           ALS  L + + R       +FS G  + PLE           +   GT +TF PD +IF 
Sbjct: 1   ALSTLLKLRIWRNGKEHYMEFSGGDAIKPLEIVGDAPMTAEGKPLTGTEVTFYPDAEIFT 60

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               F+   L    +  A+L+  V      ++     +G P + + ++ GG++ +++   
Sbjct: 61  -MTEFNLPTLEHRLRELAFLNSGVILTLRDER-----HGEPVETKLHYEGGIRAFVEYLD 114

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++    E      EK G    TVE ++ W +        + N I   +GGTH +G R 
Sbjct: 115 RNKTPQIEEPIAIVGEKDGI---TVEVSLQWNDSYHETTLCFTNNIPQRDGGTHMAGFRA 171

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA+ +    K  +S+  DD       ++SV + +P+F+ QTK KLVS + + 
Sbjct: 172 ALTRQINSYAQESGIVKKEKVSLSGDDAREGLTCVISVKVPDPKFSSQTKDKLVSSEVRP 231

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            VEN + D    +L ++P +A K++  V+E +  R   RK RE   RK A     LPGKL
Sbjct: 232 VVENIVNDRLQQWLEEHPQDARKIVTKVVEAASAREAARKARELTRRKGAPDISSLPGKL 291

Query: 454 ADCSQNIAHGTELFI 468
           ADC +  A   ELFI
Sbjct: 292 ADCQERDASKAELFI 306


>gi|291196127|emb|CBG14418.1| DNA gyrase subunit B [Pseudomonas antarctica]
          Length = 266

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 78/269 (28%), Positives = 129/269 (47%), Gaps = 15/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +TV R   I+ Q +  G+P  P++         GT+I F+P  + F +
Sbjct: 1   VSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGD-SETTGTQIHFKPSDETFKN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G R A
Sbjct: 112 NKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 VEQEMGKYFSDFLLENPNEAKLVVGKMID 257


>gi|259156943|gb|ACV95901.1| gyrase subunit B [Hamiltonella endosymbiont of Bemisia tabaci]
          Length = 271

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 73/257 (28%), Positives = 125/257 (48%), Gaps = 14/257 (5%)

Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230
           +T++R+ +I  Q +  G P +PL+   K     GTR+ F P  K F ++  F    L K 
Sbjct: 1   LTISREGSIHQQTYVMGEPXAPLKVMGKT-ELTGTRVRFWPSMKTFTNQTEFQYDILAKR 59

Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290
            +  ++L+  V  C    +   EK        F++ GG++ ++    +N++ I  ++F  
Sbjct: 60  LRELSFLNSGVFICLHDKRNDQEK-------HFHYEGGIQAFVTYLNKNKTPIHPKVFYF 112

Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349
            T K       VE A+ W +     I  + N I   +GGTH  G R A+TR +  Y E  
Sbjct: 113 STVKDDI---GVEIALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRAAMTRTMNSYMEKE 169

Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407
               K  I+   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    Y
Sbjct: 170 GFSKKSKINATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEY 229

Query: 408 LVQNPIEATKLLEWVIE 424
           L++NP +A  ++  +I+
Sbjct: 230 LLENPSDAKTIVNKIID 246


>gi|224174514|emb|CAR92675.1| DNA gyrase, B subunit [Bradyrhizobium sp. LMG 10677]
          Length = 222

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 115/231 (49%), Gaps = 10/231 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS +L + + R +     +F+ G  ++PL    +   KRGT +TF 
Sbjct: 1   SGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHGDAVAPLRVVGESPGKRGTEVTFL 60

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
              + F +   +D A L    +  A+L+  V    S  +   EK      EE ++ GG++
Sbjct: 61  ASVETFKN-IEYDFATLEHRLRELAFLNSGVNIVLSDMRHAVEKR-----EEMHYSGGVE 114

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGT 329
            +++    N+  I       ++E  G     VE A+ W +   E    + N I   +GGT
Sbjct: 115 EFVKYLDRNKKAIVPAPIMVRSEANGI---GVEAALWWNDSYHENVLCFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFA 380
           H +G R ALTR +  YA+    K  I++  DD       +LSV + +P+F+
Sbjct: 172 HLAGFRGALTRQVNGYADANAKKEKIALTGDDCREGLTAVLSVKVPDPKFS 222


>gi|167995561|gb|ACA13616.1| GyrB [Thalassospira sp. MCCC 1A01103]
 gi|167995599|gb|ACA13635.1| GyrB [Thalassospira sp. MCCC 1A02041]
 gi|167995601|gb|ACA13636.1| GyrB [Thalassospira sp. MCCC 1A02042]
          Length = 306

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 99/315 (31%), Positives = 150/315 (47%), Gaps = 19/315 (6%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------RNKRGTRITFRPDPKIFG 217
           ALS  L + V R       +FS G  + PLE               GT +TF PD +IF 
Sbjct: 1   ALSTLLKLRVWRNGKEHYMEFSGGDAIKPLEVVGDAPLTADGTPLSGTEVTFYPDAEIFT 60

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               FD   L    +  A+L+  V      ++        P + + ++ GG++ +++   
Sbjct: 61  -MTDFDLPTLEHRLRELAFLNSGVILTLRDERSG-----EPTEIKLHYEGGIRAFVEYLD 114

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++    E    + EK G    TVE A+ W +        + N I   +GGTH +G R 
Sbjct: 115 RNKARQIEEAICIEGEKDGI---TVEVALQWNDSYHETTLCFTNNIPQRDGGTHMAGFRA 171

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA+ +    K  +++  DD       ++SV + +P+F+ QTK KLVS + + 
Sbjct: 172 ALTRQINSYAQESGIAKKEKVALSGDDAREGLSCVISVKVPDPKFSSQTKDKLVSSEVRP 231

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            VEN + D    +L ++P +A K++  V+E +  R   RK RE   RK A+    LPGKL
Sbjct: 232 VVENIVNDKLAQWLEEHPQDARKIVTKVVEAASAREAARKARELTRRKGALDISSLPGKL 291

Query: 454 ADCSQNIAHGTELFI 468
           ADC +  A   ELFI
Sbjct: 292 ADCQERDASKAELFI 306


>gi|146189394|emb|CAL91165.1| DNA gyrase subunit beta [Agrobacterium rhizogenes]
          Length = 224

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 71/233 (30%), Positives = 113/233 (48%), Gaps = 12/233 (5%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS  L + + RQ  I    F+ G+  +PL+       + GT ++F 
Sbjct: 1   SGGLHGVGVSVVNALSVWLKLKIRRQGKINEMSFTHGVADAPLKVTGDAGTETGTEVSFM 60

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F     FD + L    +  A+L+  V+   +  +          +EE  + GGL+
Sbjct: 61  PSSETF-TMTEFDYSTLEHRLRELAFLNSGVRILLTDKRHSDV-----RQEEMLYDGGLE 114

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGT 329
            +++     +  +  +  + ++EK G    TVE A+ W E   E    + N I   +GGT
Sbjct: 115 AFVKYLDRAKKPLVDKPVSIRSEKDGI---TVEVAMWWNESYHENVLCFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFA 380
           H +G R ALTR I  Y E +   +   +    DD       +LSV + +P+F+
Sbjct: 172 HMAGFRGALTRQITSYGESSGITKREKVTLTGDDCREGLTAVLSVKVPDPKFS 224


>gi|224174506|emb|CAR92671.1| DNA gyrase, B subunit [Bradyrhizobium yuanmingense]
 gi|224174508|emb|CAR92672.1| DNA gyrase, B subunit [Bradyrhizobium yuanmingense]
          Length = 222

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 115/231 (49%), Gaps = 10/231 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS +L + + R N     +F+ G  ++PL+       KRGT +TF 
Sbjct: 1   SGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAHGDAVAPLKVVGDAPGKRGTEVTFL 60

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
              + F +   +D A L    +  A+L+  V    S  +   EK      EE ++ GG++
Sbjct: 61  ASTETFKN-IEYDFATLEHRLRELAFLNSGVNIVLSDMRHAVEKR-----EEMFYSGGVE 114

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGT 329
            +++    N+  +       ++E  G     VE A+ W +   E    + N I   +GGT
Sbjct: 115 EFVKYLDRNKKALVPAPIMVRSEANGI---GVEAALWWNDSYHENVLCFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFA 380
           H +G R ALTR +  YAE    K  I++  DD       +LSV + +P+F+
Sbjct: 172 HLAGFRGALTRQVNGYAEANAKKEKIALTGDDCREGLTAVLSVKVPDPKFS 222


>gi|158252624|gb|ABW23796.1| DNA gyrase [Pantoea vagans]
          Length = 247

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 67/258 (25%), Positives = 125/258 (48%), Gaps = 14/258 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  +  Q +  G+P +PL       +  GTR+ F P  + F +   F+   L K  +  +
Sbjct: 1   EGKVHQQIYVHGVPEAPLAVTGDT-DITGTRVRFWPSYETFTNVRDFEYEILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++        + + F++ GG+K +++   +N++ I   +F   TEK 
Sbjct: 60  FLNSGVSIRLEDKRD-------GKTDHFHYEGGIKAFVEYLNKNKTPIHPTVFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+TR +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ +TK KLVS + +  VE+ + +    YL++NP
Sbjct: 170 AKVSAPGDDAREGLIAVVSVKVPDPKFSLKTKDKLVSSEVKSAVEHQMNELLAEYLLENP 229

Query: 413 IEATKLLEWVIERSEERL 430
            +A  ++  +I+ +  R 
Sbjct: 230 SDAKIVVGKIIDAARARE 247


>gi|291196181|emb|CBG14473.1| DNA gyrase subunit B [Pseudomonas lini]
          Length = 266

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 78/269 (28%), Positives = 129/269 (47%), Gaps = 15/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS EL +TV R   I+ Q +  G+P  P++   +     GT+I F+P  + F +
Sbjct: 1   VSVVNALSKELILTVRRSGKIWEQTYVHGVPQEPMKIVGE-SETTGTQIHFKPSAETFKN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G R A
Sbjct: 112 NKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 VEQEMGKYFSDFLLENPNEAKLVVGKMID 257


>gi|291196260|emb|CBG14546.1| DNA gyrase subunit B [Pseudomonas veronii]
          Length = 266

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 78/269 (28%), Positives = 129/269 (47%), Gaps = 15/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+ L +TV R   I+ Q +  G+P  P++   +     GT+I FRP  + F +
Sbjct: 1   VSVVNALSELLVLTVRRSGKIWEQTYVHGVPQEPMKVVGE-SETTGTQIHFRPSDETFKN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G R A
Sbjct: 112 NKTPVNQVFHFNVQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 VEQEMGKYFSDFLLENPNEAKLVVGKMID 257


>gi|291196171|emb|CBG14462.1| DNA gyrase subunit B [Pseudomonas jessenii]
          Length = 266

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 77/269 (28%), Positives = 128/269 (47%), Gaps = 15/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +TV R   I+ Q +  G+P  P++         GT+I F+   + F +
Sbjct: 1   VSVVNALSEELVLTVRRSGKIWEQTYVHGVPQEPMKIVGD-SETTGTQIHFKASSETFKN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G R A
Sbjct: 112 NKTPVNQVFHFNVQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 VEQEMGKYFSDFLLENPNEAKLVVGKMID 257


>gi|291196256|emb|CBG14542.1| DNA gyrase subunit B [Pseudomonas umsongensis]
 gi|291196258|emb|CBG14544.1| DNA gyrase subunit B [Pseudomonas vancouverensis]
          Length = 266

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 77/269 (28%), Positives = 128/269 (47%), Gaps = 15/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +TV R   I+ Q +  G+P  P++         GT+I F+   + F +
Sbjct: 1   VSVVNALSEELVLTVRRSGKIWEQTYVHGVPQEPMKIVGD-SETTGTQIHFKASSETFKN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G R A
Sbjct: 112 NKTPVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 VEQEMGKYFSDFLLENPNEAKLVVGKMID 257


>gi|224174490|emb|CAR92663.1| DNA gyrase, B subunit [Bradyrhizobium betae]
 gi|224174492|emb|CAR92664.1| DNA gyrase, B subunit [Bradyrhizobium betae]
          Length = 222

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 114/231 (49%), Gaps = 10/231 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS +L + + R N     +F+ G  ++PL        +RGT +TF+
Sbjct: 1   SGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAHGDAVAPLVVVGDAPGRRGTEVTFQ 60

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
              + F +   +D A L    +  A+L+  V    S  +   EK      EE ++ GG++
Sbjct: 61  ASTETFKN-IEYDFATLEHRLRELAFLNSGVNIALSDMRHAVEKR-----EEMHYSGGVE 114

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGT 329
            +++    N+  I       + E  G     VE A+ W +   E    + N I   +GGT
Sbjct: 115 EFVKYLDRNKKAIVPAPIMVRAEANGI---GVEAALWWNDSYHENVLCFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFA 380
           H +G R ALTR +  YAE    K  I++  DD       +LSV + +P+F+
Sbjct: 172 HLAGFRGALTRQVNGYAEAHAKKEKIALTGDDCREGLTAVLSVKVPDPKFS 222


>gi|262527742|gb|ACY69088.1| DNA gyrase [Mycobacterium tuberculosis]
          Length = 148

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 70/148 (47%), Positives = 95/148 (64%), Gaps = 1/148 (0%)

Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485
           + R+  RK RE V RK+A     LPGKLADC       +EL++VEGDSAGGSAK  R+  
Sbjct: 1   QARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSM 60

Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545
            QA+LPLRGKI+NV  A  +++  N  +  ++ ALG     ++    LRY K+++M DAD
Sbjct: 61  FQAILPLRGKIINVEKARIDRVLKNTDVQAIITALGTGIHDEFDIGKLRYHKIVLMADAD 120

Query: 546 VDGAHIASLLLTFFYQEMYDLIEQKHLF 573
           VDG HI++LLLT  ++ M  LIE  H+F
Sbjct: 121 VDGQHISTLLLTLLFRFMRPLIENGHVF 148


>gi|224174526|emb|CAR92681.1| DNA gyrase, B subunit [Bradyrhizobium sp. LMG 15176]
 gi|224174528|emb|CAR92682.1| DNA gyrase, B subunit [Bradyrhizobium sp. LMG 15181]
          Length = 222

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 114/231 (49%), Gaps = 10/231 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS +L + + R       +F+ G  ++PL    +   KRGT +TF 
Sbjct: 1   SGGLHGVGVSVVNALSSKLALRIWRDGKEHYIEFAHGDAVAPLRVVGEAPGKRGTEVTFL 60

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
              + F +   +D A L    +  A+L+  V    S  +   EK      EE ++ GG++
Sbjct: 61  ASVETFKN-IEYDFATLEHRLRELAFLNSGVNIVLSDMRHAVEKR-----EEMHYSGGVE 114

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGT 329
            +++    N+  I       ++E  G     VE A+ W +   E    + N I   +GGT
Sbjct: 115 EFVKYLDRNKKAIVPAPIMVRSEANGI---GVEAALWWNDSYHENVLCFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFA 380
           H +G R ALTR +  YA+    K  I++  DD       +LSV + +P+F+
Sbjct: 172 HLAGFRGALTRQVNGYADANAKKEKIALTGDDCREGLTAVLSVKVPDPKFS 222


>gi|325305390|gb|ADZ06043.1| DNA gyrase subunit B [Aeromonas veronii bv. sobria]
          Length = 287

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 90/298 (30%), Positives = 149/298 (50%), Gaps = 16/298 (5%)

Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237
            ++ Q +  G P +PL++        GT++ F P P IF D   F    L K  +  ++L
Sbjct: 2   HVYEQTYHLGEPQAPLKQIGDSTG-TGTQVRFWPSPAIFSDTL-FHYEILAKRLRELSFL 59

Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297
           +  V      +++  E         F + GG+K +++   +N++ I  ++F   TE+ G 
Sbjct: 60  NSGVSIRLQDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGI 112

Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354
               VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      K  
Sbjct: 113 ---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNSYMDKEDYSKKAK 169

Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414
            +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++NP +
Sbjct: 170 SAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGD 229

Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471
           A  ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IVEG
Sbjct: 230 AKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIVEG 287


>gi|167995545|gb|ACA13608.1| GyrB [Thalassospira sp. MCCC 1A00370]
 gi|167995547|gb|ACA13609.1| GyrB [Thalassospira sp. MCCC 1A00385]
 gi|167995563|gb|ACA13617.1| GyrB [Thalassospira sp. MCCC 1A01109]
 gi|167995573|gb|ACA13622.1| GyrB [Thalassospira sp. MCCC 1A01172]
 gi|167995603|gb|ACA13637.1| GyrB [Thalassospira sp. MCCC 1A02059]
 gi|167995605|gb|ACA13638.1| GyrB [Thalassospira sp. MCCC 1A02060]
          Length = 306

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 98/315 (31%), Positives = 152/315 (48%), Gaps = 19/315 (6%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------RNKRGTRITFRPDPKIFG 217
           ALS  L + + R       +FS G  + PLE               GT +TF PD +IF 
Sbjct: 1   ALSTLLKLRIWRNGKEHYMEFSGGDAIKPLEVVGDAPLTEDGTPLSGTEVTFYPDGEIFT 60

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               FD   L    +  A+L+  V      ++        P + + ++ GG++ +++   
Sbjct: 61  QL-EFDFGTLEHRLRELAFLNSGVILTLRDERHGD-----PVETKLHYEGGIRAFVEYLD 114

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++    E  + + EK G    TVE A+ W +    +   + N I   +GGTH +G R 
Sbjct: 115 RNKARQIEEAISIEGEKDGI---TVEVALQWNDSYHEQTLCFTNNIPQRDGGTHMAGFRA 171

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA+ +    K  +++  DD       ++SV + +P+F+ QTK KLVS + + 
Sbjct: 172 ALTRQINNYAQESGIAKKEKVALSGDDAREGLSCVISVKVPDPKFSSQTKDKLVSSEVRP 231

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            VEN + D    +L ++P +A K++  V+E +  R   RK RE   RK A+    LPGKL
Sbjct: 232 VVENIVNDKLQQWLEEHPADARKIVTKVVEAASAREAARKARELTRRKGALDISSLPGKL 291

Query: 454 ADCSQNIAHGTELFI 468
           ADC +  A   ELFI
Sbjct: 292 ADCQERDASKAELFI 306


>gi|5360239|dbj|BAA81914.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|5360285|dbj|BAA81922.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|5360325|dbj|BAA81942.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|5360437|dbj|BAA81998.1| DNA gyrase subunit B [Pseudomonas syringae pv. pisi]
 gi|5360445|dbj|BAA82002.1| DNA gyrase subunit B [Pseudomonas syringae pv. pisi]
 gi|5360453|dbj|BAA82006.1| DNA gyrase subunit B [Pseudomonas syringae pv. syringae]
 gi|5360461|dbj|BAA82010.1| DNA gyrase subunit B [Pseudomonas syringae pv. syringae]
 gi|5360469|dbj|BAA82014.1| DNA gyrase subunit B [Pseudomonas syringae pv. syringae]
          Length = 204

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 62/211 (29%), Positives = 101/211 (47%), Gaps = 13/211 (6%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDSTGTQ 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F+P  + F +   F    L K  +  ++L+  V      ++   E       E F + 
Sbjct: 60  IHFKPSAETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYE 111

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GGL+ +++    N++ ++           G     VE A+ W +     +  + N I   
Sbjct: 112 GGLRAFVEYLNTNKTPVNEVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQR 168

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
           +GGTH  G R ALTR +  Y E     +   
Sbjct: 169 DGGTHLVGFRSALTRNLNNYIEQEGLAKKHK 199


>gi|146189388|emb|CAL91162.1| DNA gyrase subunit beta [Rhizobium leguminosarum]
          Length = 224

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 69/233 (29%), Positives = 111/233 (47%), Gaps = 12/233 (5%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS  L + + RQ+ I    F+ G+  +PL+      N+ GT ++F 
Sbjct: 1   SGGLHGVGVSVVNALSVWLKLKIRRQDKIHEMSFTHGVADAPLKVTGDAPNETGTEVSFM 60

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P    F     FD   L    +  A+L+  V+   +  +          +EE  + GGL+
Sbjct: 61  PSTDTF-TMTEFDYGTLEHRLRELAFLNSGVRILLTDKRHSDI-----RQEELRYDGGLE 114

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGT 329
            ++      +  +  +    + EK G    TVE A+ W +   E    + N I   +GGT
Sbjct: 115 AFVAYLDRAKKSLVDKPVAIRGEKDGI---TVEVAMWWNDSYHENVLCFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFA 380
           H +G R ALTR +  YA+ +   +   +    +D       +LSV + +P+F+
Sbjct: 172 HMAGFRAALTRQVVSYADSSGITKREKVTLQGEDCREGLTAVLSVKVPDPKFS 224


>gi|224174562|emb|CAR92699.1| DNA gyrase, B subunit [Bradyrhizobium sp. RLA09]
 gi|224174564|emb|CAR92700.1| DNA gyrase, B subunit [Bradyrhizobium sp. RLA10]
          Length = 222

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 114/231 (49%), Gaps = 10/231 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS +L + + R N     +F+ G  ++PL        KRGT +TF+
Sbjct: 1   SGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAHGDAVAPLVVVGDAPGKRGTEVTFQ 60

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
              + F +   +D A L    +  A+L+  V    S  +   EK      EE ++ GG++
Sbjct: 61  ASTETFKN-IEYDFATLEHRLRELAFLNSGVNIALSDMRHAVEKR-----EEMHYSGGVE 114

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGT 329
            +++    N+  I       + E  G     VE A+ W +   E    + N I   +GGT
Sbjct: 115 EFVKYLDRNKKAIVPAPIMVRAEANGI---GVEAALWWNDSYHENVLCFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFA 380
           H +G R ALTR +  YAE    K  I++  DD       +LSV + +P+F+
Sbjct: 172 HLAGFRGALTRQVNGYAEANAKKEKIALTGDDCREGLTAVLSVKVPDPKFS 222


>gi|283979169|gb|ADB56668.1| DNA topoisomerase IV subunit B [Spiroplasma endosymbiont of
           Drosophila neotestacea]
          Length = 328

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 104/339 (30%), Positives = 155/339 (45%), Gaps = 20/339 (5%)

Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228
             V + R   I+  KF  G        +    N+ GT ITF PD KIF     F    + 
Sbjct: 1   FDVKIYRDTKIWXIKFGNGGQXKXPLTEIGTTNETGTTITFLPDSKIFKVI-DFSFTTIS 59

Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288
           +  +  A+L+  VK   + ++         +  E+ F  GL+ ++    E +  I++ + 
Sbjct: 60  ERIRESAFLNSGVKITLTDER-------ADKTVEYLFNNGLEEFITYMNEGKKSITTIVM 112

Query: 289 TGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347
               EK+      VE A+ +  E N  + S+ N + T EGG+H  G R  LT+ I  YA 
Sbjct: 113 MKGLEKE----IEVEVALQYSTEFNENLLSFANNVKTSEGGSHVVGFRSGLTKVINDYAR 168

Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDP 403
                 ++  ++ S D       I+SV + E   ++ GQTK KL + DA+  VE  +   
Sbjct: 169 KEGLLKEKDKNLDSTDTREGLTAIISVKVPESLIQYEGQTKGKLGTYDARAAVEIIVTKQ 228

Query: 404 FDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGKLADCSQNI 460
           F  +L +N   A  ++E  +     R   RK RE  R    R        GKL       
Sbjct: 229 FGFWLTENKTSAYTIIEKALLARNVREEARKAREAARNNKKRGNSDRLLTGKLTPAQNRN 288

Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
               E+F+VEGDSAGGSAK  R+R  QA+LPLRGK++N 
Sbjct: 289 KLNNEIFLVEGDSAGGSAKLGRDRRFQAILPLRGKVINA 327


>gi|5360333|dbj|BAA81946.1| DNA gyrase subunit B [Pseudomonas syringae pv. lachrymans]
 gi|5360349|dbj|BAA81954.1| DNA gyrase subunit B [Pseudomonas syringae pv. maculicola]
 gi|5360357|dbj|BAA81958.1| DNA gyrase subunit B [Pseudomonas syringae pv. maculicola]
 gi|5360509|dbj|BAA82034.1| DNA gyrase subunit B [Pseudomonas syringae pv. tomato]
          Length = 204

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 62/211 (29%), Positives = 101/211 (47%), Gaps = 13/211 (6%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYIHGVPQEPMKIVGE-SDSTGTQ 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F+P  + F +   F    L K  +  ++L+  V      ++   E       E F + 
Sbjct: 60  IHFKPSAETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYE 111

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GGL+ +++    N++ ++           G     VE A+ W +     +  + N I   
Sbjct: 112 GGLRAFVEYLNTNKTPVNEVFHFNVQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQR 168

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
           +GGTH  G R ALTR +  Y E     +   
Sbjct: 169 DGGTHLVGFRSALTRNLNNYIEQEGLAKKHK 199


>gi|291196217|emb|CBG14509.1| DNA gyrase subunit B [Pseudomonas panacis]
          Length = 266

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 78/269 (28%), Positives = 128/269 (47%), Gaps = 15/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +TV R   I+ Q +  G+P  P++         GT+I F+P    F +
Sbjct: 1   VSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGD-SETTGTQIHFKPSADTFKN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G R A
Sbjct: 112 NKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 VEQEMGKYFSDFLLENPNEAKLVVGKMID 257


>gi|291196177|emb|CBG14468.1| DNA gyrase subunit B [Pseudomonas koreensis]
 gi|291196201|emb|CBG14493.1| DNA gyrase subunit B [Pseudomonas moraviensis]
 gi|315133341|emb|CAJ29742.2| DNA gyrase subunit B [Pseudomonas mediterranea]
          Length = 266

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 77/269 (28%), Positives = 128/269 (47%), Gaps = 15/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +TV R   I+ Q +  G+P +P+          GT+I F+   + F +
Sbjct: 1   VSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGD-SETTGTQIHFKASSETFKN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G R A
Sbjct: 112 NKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 VEQEMGKYFSDFLLENPNEAKLVVGKMID 257


>gi|259156955|gb|ACV95907.1| gyrase subunit B [Hamiltonella endosymbiont of Bemisia tabaci]
          Length = 270

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 72/255 (28%), Positives = 123/255 (48%), Gaps = 14/255 (5%)

Query: 173 VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQ 232
           ++R+ +I  Q +  G P +PL+   K     GTR+ F P  K F ++  F    L K  +
Sbjct: 2   ISREGSIHQQTYVMGEPQAPLKVMGKT-ELTGTRVRFWPSMKTFTNQTEFQYDILAKRLR 60

Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292
             ++L+  V  C    +   EK        F++ GG++ ++    +N++ I  ++F   T
Sbjct: 61  ELSFLNSGVFICLHDKRNDQEK-------HFHYEGGIQAFVTYLNKNKTPIHPKVFYFST 113

Query: 293 EKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ- 350
            K       VE A+ W +     I  + N I   +GGTH  G R A+TR +  Y E    
Sbjct: 114 VKDDI---GVEIALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRAAMTRTMNSYMEKEGF 170

Query: 351 -NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409
             K  I+   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL+
Sbjct: 171 SKKSKINATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEYLL 230

Query: 410 QNPIEATKLLEWVIE 424
           +NP +A  ++  +I+
Sbjct: 231 ENPSDAKTIVNKIID 245


>gi|291196145|emb|CBG14436.1| DNA gyrase subunit B [Pseudomonas cedrina]
 gi|291196165|emb|CBG14456.1| DNA gyrase subunit B [Pseudomonas grimontii]
          Length = 266

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 78/269 (28%), Positives = 128/269 (47%), Gaps = 15/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +TV R   I+ Q +  G+P  P++         GT+I F+P    F +
Sbjct: 1   VSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGD-SESTGTQIHFKPSADTFKN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G R A
Sbjct: 112 NKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 VEQEMGKYFSDFLLENPNEAKLVVGKMID 257


>gi|308522584|dbj|BAJ22903.1| gyrase B subunit [Aliivibrio sifiae]
 gi|308522586|dbj|BAJ22904.1| gyrase B subunit [Aliivibrio sifiae]
 gi|308522590|dbj|BAJ22906.1| gyrase B subunit [Aliivibrio sp. ATCC 33715]
          Length = 265

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 76/274 (27%), Positives = 125/274 (45%), Gaps = 12/274 (4%)

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+SVVNALS+++ +T+ R+  IF Q +  G P +PL               +  D    
Sbjct: 1   VGVSVVNALSEKVELTIHRKGEIFQQTYCHGEPQAPLAVVGTTDTTGTKIRFWPSDQT-- 58

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                F    L K  +  ++L+  V       +E        + + F F GG++ ++   
Sbjct: 59  FTNVEFVYDILAKRLRELSFLNSGVSIILQDMRE------EDKSDHFMFEGGIQAFVTHL 112

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
             N++ +  +IF    E+K      VE A+ W +     I  Y N I   +GG H SG R
Sbjct: 113 NRNKTPVHQKIFYFDAERK-EDGIVVEVAMQWNDSYQENIFCYTNNIPQRDGGAHLSGFR 171

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR +  + +      K   S   DD       ++SV + +P+F+ QTK KLVS + +
Sbjct: 172 SALTRTLNTFMDKEGFSKKAKSSASGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVK 231

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
             VE+A+ +    +L +NP EA  +   +I+ + 
Sbjct: 232 SAVESAMNEKLAEFLAENPGEAKMVCSKIIDAAR 265


>gi|291196207|emb|CBG14499.1| DNA gyrase subunit B [Pseudomonas orientalis]
          Length = 266

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 78/269 (28%), Positives = 128/269 (47%), Gaps = 15/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +TV R   I+ Q +  G+P  P++         GT+I F+P    F +
Sbjct: 1   VSVVNALSEELILTVRRSGKIWEQTYVHGVPKEPMKIVGD-SESTGTQIHFKPSADTFKN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G R A
Sbjct: 112 NKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 VEQEMGKYFSDFLLENPNEAKLVVGKMID 257


>gi|291196187|emb|CBG14478.1| DNA gyrase subunit B [Pseudomonas luteola]
          Length = 267

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 76/269 (28%), Positives = 130/269 (48%), Gaps = 14/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +T+ R   ++ Q +  G+P  PL+   +  +  GT+I F+P  + F +
Sbjct: 1   VSVVNALSEELRLTIRRLGQVWEQVYVHGVPQEPLKAIGET-DGTGTQIHFKPSAETFSN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ ++     
Sbjct: 60  IH-FSWDILAKRLRELSFLNSGVGILLRDERSGKE-------EMFKYEGGLRAFVDYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++        +++      VE A+ W +     I  + N I   +GGTH +G R A
Sbjct: 112 NKTPVNQVFHFNVGDRED--GIGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSA 169

Query: 338 LTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E     +        DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 170 LTRNLNTYIEAEGLAKKFKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 229

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 230 VEQEMGKQFADFLLENPGEAKAVVGKMID 258


>gi|146189336|emb|CAL91136.1| DNA gyrase subunit beta [Sinorhizobium saheli]
 gi|146189354|emb|CAL91145.1| DNA gyrase subunit beta [Sinorhizobium saheli]
 gi|146189378|emb|CAL91157.1| DNA gyrase subunit beta [Sinorhizobium saheli]
          Length = 224

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 110/233 (47%), Gaps = 12/233 (5%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS  L + + R   +    F+ G+   PL        + GT +TF 
Sbjct: 1   SGGLHGVGVSVVNALSTSLKLKIRRAGKVHEMSFTHGVADGPLTITGDAGGETGTEVTFL 60

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   FD A L    +  A+L+  V+   +  +    +          + GGL+
Sbjct: 61  PSEQTFSN-IEFDFATLEHRLRELAFLNSGVRIVLTDKRHSDIRRDE-----MMYDGGLE 114

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGT 329
            ++      +  +  +  + + EK G    TVE A+ W +   E    + N I   +GGT
Sbjct: 115 AFVAYLDRAKKPLVHKPVSIRGEKDGI---TVEVAMWWNDSYHENVLCFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
           H +G R ALTR I  YA+ +    K  +S+  DD       +LSV + +P+F+
Sbjct: 172 HMAGFRGALTRQITSYADTSGITKKEKVSLTGDDCREGLTAVLSVKVPDPKFS 224


>gi|164456669|dbj|BAF97827.1| gyrase B subunit [Vibrio furnissii]
          Length = 254

 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 66/264 (25%), Positives = 128/264 (48%), Gaps = 13/264 (4%)

Query: 168 ELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARL 227
           ++ +T+ R   + +Q +  G+P +PL       ++ GT + F P  + F +   F    L
Sbjct: 1   KVVLTIHRGGKVHTQTYRHGVPEAPLAVVGDT-DRSGTMVRFWPSAETFTNI-EFHYEIL 58

Query: 228 LKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEI 287
            K  +  ++L+  V      ++E        +++ F + GG++ ++     N++ I  ++
Sbjct: 59  AKRLRELSFLNSGVSIKLVDEREDN------KQDHFMYEGGIQAFVNHLNRNKTPIHEKV 112

Query: 288 FTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYA 346
           F   +E++     +VE A+ W +     I  + N I   +GGTH +G R ALTR +  Y 
Sbjct: 113 FHFNSERED--GISVEVAMQWNDGFQESIYCFTNNIPQRDGGTHLAGFRAALTRTLNTYM 170

Query: 347 ELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF 404
           +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE+A+ +  
Sbjct: 171 DKEGYSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKL 230

Query: 405 DHYLVQNPIEATKLLEWVIERSEE 428
           + +L +NP EA  +   +I+ +  
Sbjct: 231 NDFLAENPSEAKIVCSKIIDAARA 254


>gi|224496206|gb|ACN52484.1| gyrB [Enterobacter cancerogenus]
          Length = 246

 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 69/257 (26%), Positives = 123/257 (47%), Gaps = 14/257 (5%)

Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235
           +  I  Q ++ G+P +PL       +K GT + F P  + F +   F+   L K  +  +
Sbjct: 1   EGKIHRQVYTHGVPQAPLAVTGDT-DKTGTLVRFWPSHETFTNVTEFEYDILAKRLRELS 59

Query: 236 YLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295
           +L+  V       ++  E       + F++ GG++ +++   +N++ I   IF   TEK 
Sbjct: 60  FLNSGVSIRLKDKRDGKE-------DHFHYEGGIRAFVEYLNKNKTPIHPNIFYFSTEKD 112

Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352
           G     VE A+ W +     I  + N I   +GGTH +G R A+ R +  Y +      K
Sbjct: 113 GI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMARSLNAYMDKEGYSKK 169

Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412
             +S   DD     + ++SV + +P+F+ QTK KLVS + +  VE  + +    YL++NP
Sbjct: 170 AKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENP 229

Query: 413 IEATKLLEWVIERSEER 429
            +A  ++  +I+    R
Sbjct: 230 SDAKIVVGKIIDAXXXR 246


>gi|146189362|emb|CAL91149.1| DNA gyrase subunit beta [Sinorhizobium medicae]
          Length = 224

 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 71/233 (30%), Positives = 114/233 (48%), Gaps = 12/233 (5%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS  L + + R   +    F+ G+   PL+      +  GT +TF 
Sbjct: 1   SGGLHGVGVSVVNALSVSLKLKIRRSGKVHEMSFTHGVADGPLKVTGDAGSDTGTEVTFT 60

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F+ ARL    +  A+L+  V+   +  +    +      EE  + GGL+
Sbjct: 61  PSEQTFSN-IEFEFARLEHRLRELAFLNSGVRIVLTDKRHSDIRR-----EELMYDGGLE 114

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            ++      +  +  +  + + EK G    TVE A+ W +     +  + N I   +GGT
Sbjct: 115 AFVAYLDRAKKPLVQKPVSIRGEKDGI---TVEVAMWWNDSYHENMLCFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
           H +G R ALTR I  YA+ +    K  +S+  DD       +LSV + +P+F+
Sbjct: 172 HMAGFRAALTRQITSYADSSGVTKKEKVSLTGDDCREGLTAVLSVKVPDPKFS 224


>gi|146189376|emb|CAL91156.1| DNA gyrase subunit beta [Sinorhizobium arboris]
          Length = 224

 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 73/233 (31%), Positives = 114/233 (48%), Gaps = 12/233 (5%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS  L + + R   +    F+ G+   PL+      ++ GT +TF 
Sbjct: 1   SGGLHGVGVSVVNALSVSLKLRIRRAGKVHEMSFTHGVADGPLKVTGDAGDETGTEVTFT 60

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   FD A L    +  A+L+  V+   +  +    +      EE  + GGL+
Sbjct: 61  PSEQTFSN-VEFDFATLEHRLRELAFLNSGVRIVLTDKRHSDIRR-----EEMMYDGGLE 114

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGT 329
            ++      +  +  +  + + EK G    TVE A+ W +   E    + N I   +GGT
Sbjct: 115 AFVAYLDRAKKPLVHKPVSIRGEKDGI---TVEVAMWWNDSFHENVLCFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
           H +G R ALTR I  YAE +    K  +S+  DD       +LSV + +P+F+
Sbjct: 172 HMAGFRGALTRQITSYAETSGVTKKEKVSLTGDDCREGLTAVLSVKVPDPKFS 224


>gi|146189380|emb|CAL91158.1| DNA gyrase subunit beta [Rhizobium galegae]
          Length = 224

 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 67/233 (28%), Positives = 113/233 (48%), Gaps = 12/233 (5%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS  L + + R   +    F+ G+   PL+   +   + GT +TF 
Sbjct: 1   SGGLHGVGVSVVNALSVWLKLRIRRNGKLHEISFTHGVADGPLKVIGEYEGRSGTEVTFL 60

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
              + F     +D   L    +  A+L+  V+   +  ++   K      EE  + GGL+
Sbjct: 61  ASSETF-TMTEYDYGTLEHRLRELAFLNSGVRIRLTDKRKPDIKE-----EEMLYDGGLE 114

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            +++    ++  +  +    K EK G    TVE A+ W +     +  + N I   +GGT
Sbjct: 115 AFVRYLDRSKKPLVDKPVAIKGEKDG---MTVEVAMWWNDSYHENMLCFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
           H +G R ALTR +  YA+ +    K  +++  +D       +LSV + +P+F+
Sbjct: 172 HMAGFRGALTRQVTSYADSSGITKKEKVTLQGEDCREGLTAVLSVKVPDPKFS 224


>gi|146189390|emb|CAL91163.1| DNA gyrase subunit beta [Rhizobium undicola]
          Length = 224

 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 114/233 (48%), Gaps = 12/233 (5%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS +L + + R   +    F+ G+  +PL        + GT +TF 
Sbjct: 1   SGGLHGVGVSVVNALSVKLSLRIRRSGKVHEMSFTHGVADAPLAVTGSYEGRSGTEVTFL 60

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F     FD   L    +  A+L+  V+   +  ++         +EE  + GGL+
Sbjct: 61  PSAETFTK-TEFDYGTLEHRLRELAFLNSGVRILLTDKRKSDI-----RQEEMIYDGGLE 114

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGT 329
            +++    ++  +  +    K EK G    TVE A+ W +   E    + N I   +GGT
Sbjct: 115 AFVRYLDRSKKSLVDKPVYIKGEKDGI---TVEVAMWWNDSYHENVLCFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
           H +G R ALTR I  YA+ +    K  +S+  DD       +LSV + +P+F+
Sbjct: 172 HMAGFRGALTRQITSYADSSGIIKKEKVSLTGDDCREGLSAVLSVKVPDPKFS 224


>gi|90019184|gb|ABD84246.1| DNA gyrase subunit B-like [Yersinia sp. MH-1]
 gi|90019283|gb|ABD84292.1| unknown [Yersinia sp. MH-1]
          Length = 181

 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 57/192 (29%), Positives = 94/192 (48%), Gaps = 12/192 (6%)

Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211
           GGLHGVG+SVVNALS++L + + R+  +  Q +  G P  PL+   +   + GT + F P
Sbjct: 1   GGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGEPQGPLKVVGET-EQTGTMVRFWP 59

Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271
             + F +   F    L K  +  ++L+  V       +   E       + F++ GG+K 
Sbjct: 60  SFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLKDKRNDKE-------DHFHYEGGIKA 112

Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330
           +++   +N++ I  ++F   T K       VE A+ W +     I  + N I   +GGTH
Sbjct: 113 FVEYLNKNKNPIHPKVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTH 169

Query: 331 ESGLRVALTRGI 342
             G R A+TR +
Sbjct: 170 LVGFRTAMTRTL 181


>gi|115500930|dbj|BAF34135.1| B subunit gyrase [Azotobacter chroococcum]
          Length = 226

 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 75/238 (31%), Positives = 116/238 (48%), Gaps = 16/238 (6%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS+EL +T+ R   ++ Q +  G+  +PL          GT+I F+
Sbjct: 1   SGGLHGVGVSVVNALSEELVLTIRRDGKVWEQTYVHGVSQAPLAAVGDTEG-TGTQIHFK 59

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F    L K  +  ++L+  V      ++   E       E F + GGLK
Sbjct: 60  PSAETFHNIH-FSWDILAKRLRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLK 111

Query: 271 TYLQTKLENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGG 328
            ++     +++ +S       + E+ G     VE A+ W +  N  I  + N I   +GG
Sbjct: 112 AFVDYLNTHKNAVSQVFHFNMQREEDGV---GVEVALQWNDGFNENILCFTNNIPQRDGG 168

Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           TH +G R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK
Sbjct: 169 THLAGFRSALTRNLNAYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTK 226


>gi|146189332|emb|CAL91134.1| DNA gyrase subunit beta [Sinorhizobium medicae]
          Length = 224

 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 114/233 (48%), Gaps = 12/233 (5%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS  L + + R   I    F+ G+   PL+      +  GT +TF 
Sbjct: 1   SGGLHGVGVSVVNALSVSLKLKIRRSGKIHEMSFTHGVADGPLKVTGDAGSDTGTEVTFT 60

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F+ ARL    +  A+L+  V+   +  +    +      EE  + GGL+
Sbjct: 61  PSEQTFSN-IEFEFARLEHRLRELAFLNSGVRIVLTDKRHSDIRR-----EELMYDGGLE 114

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329
            ++      +  +  +  + + EK G    TVE A+ W +     +  + N I   +GGT
Sbjct: 115 AFVAYLDRAKKPLVQKPVSIRGEKDGI---TVEVAMWWNDSYHENMLCFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
           H +G R ALTR I  YA+ +    K  +S+  DD       +LSV + +P+F+
Sbjct: 172 HMAGFRAALTRQITSYADSSGVTKKEKVSLTGDDCREGLTAVLSVKVPDPKFS 224


>gi|291196159|emb|CBG14450.1| DNA gyrase subunit B [Pseudomonas fuscovaginae]
          Length = 266

 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 76/269 (28%), Positives = 129/269 (47%), Gaps = 15/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +TV R   I+ Q +  G+P +P+          GT+I F+   + F +
Sbjct: 1   VSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGD-SETTGTQIHFKASAETFKN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++         ++E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRIRELSFLNSGVGILLRDER-------TGKEEVFRYEGGLRAFVEYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G R A
Sbjct: 112 NKTTVNQVFHFNIQREDGI---GVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKGA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 VEQEMGKYFSDFLLENPNEAKLVVGKMID 257


>gi|146189338|emb|CAL91137.1| DNA gyrase subunit beta [Sinorhizobium arboris]
 gi|146189358|emb|CAL91147.1| DNA gyrase subunit beta [Sinorhizobium arboris LMG 14919]
          Length = 224

 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 74/233 (31%), Positives = 114/233 (48%), Gaps = 12/233 (5%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS  L + + R   I    F+ G+   PL+      ++ GT +TF 
Sbjct: 1   SGGLHGVGVSVVNALSVSLKLRIRRAGKIHEMSFTHGVADGPLKVTGDAGDETGTEVTFT 60

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   FD A L    +  A+L+  V+   +  +    +      EE  + GGL+
Sbjct: 61  PSEQTFSN-VEFDFATLEHRLRELAFLNSGVRIVLTDKRHSDIRR-----EEMMYDGGLE 114

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGT 329
            ++      +  +  +  + + EK G    TVE A+ W +   E    + N I   +GGT
Sbjct: 115 AFVAYLDRAKKPLVHKPVSIRGEKDGI---TVEVAMWWNDSFHENVLCFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
           H +G R ALTR I  YAE +    K  +S+  DD       +LSV + +P+F+
Sbjct: 172 HMAGFRGALTRQITSYAETSGVTKKEKVSLTGDDCREGLTAVLSVKVPDPKFS 224


>gi|5360309|dbj|BAA81934.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|5360413|dbj|BAA81986.1| DNA gyrase subunit B [Pseudomonas syringae]
          Length = 204

 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 62/211 (29%), Positives = 101/211 (47%), Gaps = 13/211 (6%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSEILLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDTTGTQ 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F+P  + F +   F    L K  +  ++L+  V      ++   E       E F + 
Sbjct: 60  IHFKPSAETFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYE 111

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GGL+ +++    N++ ++           G     VE A+ W +     +  + N I   
Sbjct: 112 GGLRAFVEYLNTNKTPVNQVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQR 168

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
           +GGTH  G R ALTR +  Y E     +   
Sbjct: 169 DGGTHLVGFRSALTRNLNNYIEQEGLAKKHK 199


>gi|146424625|dbj|BAF62121.1| DNA gyrase B subunit [Rhodopseudomonas faecalis]
          Length = 222

 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 78/231 (33%), Positives = 112/231 (48%), Gaps = 10/231 (4%)

Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209
           +SGGLHGVG+SVVNALS  L + V R +     +F+ G  L+PL        KRGT +TF
Sbjct: 1   VSGGLHGVGVSVVNALSSRLLLRVWRDDKEHFIEFAHGEALAPLAVVGAAGGKRGTEVTF 60

Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269
              P+ F +   +D A L    +  A+L+  V    S  +   EK      EE  + GG+
Sbjct: 61  YASPETFTN-IEYDFATLEHRLRELAFLNSGVNILLSDLRHGVEKR-----EEMRYEGGV 114

Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328
             +++    N+  I     T   E  G    TVE A+ W +   E    + N I   +GG
Sbjct: 115 VEFVKYLDRNKKAIVPAPITILAEMNGI---TVECALWWNDSYHENVLCFTNNIPQRDGG 171

Query: 329 THESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEF 379
           TH +G R ALTR +  YA++   K  I++  DD       +LSV + +P F
Sbjct: 172 THLAGFRGALTRQVNGYADVIAKKEKIALTGDDCREGLTAVLSVKVPDPSF 222


>gi|146189382|emb|CAL91159.1| DNA gyrase subunit beta [Rhizobium giardinii]
          Length = 224

 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 71/233 (30%), Positives = 111/233 (47%), Gaps = 12/233 (5%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS +L + + RQ  I    F+ G+  +PL        + GT +TF 
Sbjct: 1   SGGLHGVGVSVVNALSVKLKLKIKRQGKIHEINFTHGVADAPLAVIGDSNGETGTEVTFL 60

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F     FD   L    +  A+L+  V+   +  +    +          + GGL+
Sbjct: 61  PSTETF-TMIEFDYGTLEHRLRELAFLNSGVRILLTDKRHSDIRQDE-----MIYDGGLE 114

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGT 329
            ++      +  + S+    + EK G    TVE A+ W +   E    + N I   +GGT
Sbjct: 115 AFVAYLDRAKKPLVSKPVAIRGEKDGI---TVEVAMWWNDSYHENVLCFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
           H +G R ALTR I  YA+ +    K  +++  DD       +LSV + +P+F+
Sbjct: 172 HMAGFRGALTRQIVSYADSSGIMKKEKVTLTGDDCREGLTAVLSVKVPDPKFS 224


>gi|5360341|dbj|BAA81950.1| DNA gyrase subunit B [Pseudomonas syringae pv. lachrymans]
          Length = 204

 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 62/211 (29%), Positives = 100/211 (47%), Gaps = 13/211 (6%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQKPMKIVGE-SDTTGTQ 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F+P    F +   F    L K  +  ++L+  V      ++   E       E F + 
Sbjct: 60  IHFKPSADTFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYE 111

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GGL+ +++    N++ ++           G     VE A+ W +     +  + N I   
Sbjct: 112 GGLRAFVEYLNTNKTPVNEVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQR 168

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
           +GGTH  G R ALTR +  Y E     +   
Sbjct: 169 DGGTHLVGFRSALTRNLNNYIEQEGLAKKHK 199


>gi|224174516|emb|CAR92676.1| DNA gyrase, B subunit [Bradyrhizobium sp. LMG 10691]
          Length = 222

 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 113/231 (48%), Gaps = 10/231 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS +L + + R +     +F+ G  ++PL        KRGT +TF 
Sbjct: 1   SGGLHGVGVSVVNALSSKLGLRIWRDDKEHYIEFAHGDAVAPLRVVGDSPGKRGTEVTFL 60

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
              + F +   +D A L    +  A+L+  V    S  +   EK      EE ++ GG++
Sbjct: 61  ASVETFKN-IEYDFATLEHRLRELAFLNSGVNIVLSDMRHAVEKR-----EEMHYSGGVE 114

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGT 329
            +++    N+  I       ++E  G     VE A+ W +   E    + N I   +GGT
Sbjct: 115 EFVKYLDRNKKAIVPAPIMVRSEANGI---GVEAALWWNDSYHENVLCFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFA 380
           H +G R ALTR +  YA+    K  I++  DD       +LSV +  P+F+
Sbjct: 172 HLAGFRGALTRQVNGYADANAKKEKIALTGDDCREGLTAVLSVKVPYPKFS 222


>gi|5360293|dbj|BAA81926.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|5360301|dbj|BAA81930.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|5360317|dbj|BAA81938.1| DNA gyrase subunit B [Pseudomonas syringae pv. glycinea]
 gi|5360365|dbj|BAA81962.1| DNA gyrase subunit B [Pseudomonas syringae pv. mori]
 gi|5360373|dbj|BAA81966.1| DNA gyrase subunit B [Pseudomonas syringae pv. mori]
 gi|5360421|dbj|BAA81990.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|5360485|dbj|BAA82022.1| DNA gyrase subunit B [Pseudomonas syringae pv. tabaci]
          Length = 204

 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 62/211 (29%), Positives = 100/211 (47%), Gaps = 13/211 (6%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDTTGTQ 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F+P    F +   F    L K  +  ++L+  V      ++   E       E F + 
Sbjct: 60  IHFKPSADTFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYE 111

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GGL+ +++    N++ ++           G     VE A+ W +     +  + N I   
Sbjct: 112 GGLRAFVEYLNTNKTPVNEVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQR 168

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
           +GGTH  G R ALTR +  Y E     +   
Sbjct: 169 DGGTHLVGFRSALTRNLNNYIEQEGLAKKHK 199


>gi|291196254|emb|CBG14540.1| DNA gyrase subunit B [Pseudomonas trivialis]
          Length = 266

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 76/269 (28%), Positives = 128/269 (47%), Gaps = 15/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS++L +TV R   I+ Q +  G+P +P+          GT+I F+   + F +
Sbjct: 1   VSVVNALSEQLVLTVRRSGKIWEQTYVHGVPQAPMAIVGD-SESTGTQIHFKASSETFKN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G R A
Sbjct: 112 NKTAVNQVFHFNVQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 VEQEMGKYFSDFLLENPNEAKLVVGKMID 257


>gi|291196244|emb|CBG14530.1| DNA gyrase subunit B [Pseudomonas rhodesiae]
          Length = 266

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 77/269 (28%), Positives = 128/269 (47%), Gaps = 15/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +TV R   I+ Q +  G+P +P+          GT+I F+   + F +
Sbjct: 1   VSVVNALSEELILTVRRSGKIWEQTYVHGVPQAPMAIVGD-SETTGTQIHFKASSETFKN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G R A
Sbjct: 112 NKTPVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 VEQEMGKYFSDFLLENPNEAKLVVGKMID 257


>gi|281332068|emb|CAZ40008.1| DNA gyrase subunit B [Stenotrophomonas rhizophila]
          Length = 236

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 71/246 (28%), Positives = 126/246 (51%), Gaps = 13/246 (5%)

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS +L + + +    + Q+++ G  L PL++       RGT + F P  
Sbjct: 1   LHGVGVSVVNALSQKLVLDIYQGGFHYQQEYADGAALHPLKQVAASTK-RGTTLRFWPSL 59

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
           K F D   F    L +  +  ++L+  VK   + ++          +++F++ GG+++++
Sbjct: 60  KAFHDNVEFHYDILARRLRELSFLNSGVKIVLADERGD------GRRDDFHYEGGIRSFV 113

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   + ++ +   + +   E  G    TV+ A+ W +     +  + N I   +GGTH +
Sbjct: 114 EHLAQLKTPLHPNVISVTGESNGI---TVDVALQWTDSYQETMYCFTNNIPQKDGGTHLA 170

Query: 333 GLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR +  Y E     +   I++  DD+    + +LSV + +P F+ QTK KLVS 
Sbjct: 171 GFRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSS 230

Query: 391 DAQRTV 396
           D +  V
Sbjct: 231 DVRPAV 236


>gi|167995543|gb|ACA13607.1| GyrB [Thalassospira sp. MCCC 1A00350]
 gi|167995557|gb|ACA13614.1| GyrB [Thalassospira sp. MCCC 1A01057]
 gi|167995567|gb|ACA13619.1| GyrB [Thalassospira sp. MCCC 1A01148]
 gi|167995575|gb|ACA13623.1| GyrB [Thalassospira sp. MCCC 1A01275]
 gi|167995595|gb|ACA13633.1| GyrB [Thalassospira sp. MCCC 1A02039]
 gi|167995597|gb|ACA13634.1| GyrB [Thalassospira sp. MCCC 1A02040]
 gi|167995607|gb|ACA13639.1| GyrB [Thalassospira sp. MCCC 1A02093]
 gi|167995611|gb|ACA13641.1| GyrB [Thalassospira sp. MCCC 1A02096]
          Length = 306

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 99/315 (31%), Positives = 150/315 (47%), Gaps = 19/315 (6%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------RNKRGTRITFRPDPKIFG 217
           ALS  L + + R       +FS G  + PLE               GT +TF PD +IF 
Sbjct: 1   ALSTLLKLRIWRNGKEHYMEFSGGDAIKPLEVVGDAPLTEDGTPLSGTEVTFYPDAEIFT 60

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               FD   L    +  A+L+  V      ++        P + + ++ GG++ +++   
Sbjct: 61  -MTDFDLPTLEHRLRELAFLNSGVILTLRDERSGD-----PVETKLHYEGGIRAFVEYLD 114

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N+     E  + + EK G    TVE A+ W +        + N I   +GGTH +G R 
Sbjct: 115 RNKVRQIEEPISIEGEKDGI---TVEVALQWNDSYHETTLCFTNNIPQRDGGTHMAGFRA 171

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA+ +    K  +++  DD       ++SV + +P+F+ QTK KLVS + + 
Sbjct: 172 ALTRQINSYAQESGIAKKEKVALSGDDAREGLSCVISVKVPDPKFSSQTKDKLVSSEVRP 231

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            VEN L D    +L ++P +A K++  V+E +  R   RK RE   RK A+    LPGKL
Sbjct: 232 VVENILNDRLAQWLEEHPQDARKIVTKVVEAASAREAARKARELTRRKGALDISSLPGKL 291

Query: 454 ADCSQNIAHGTELFI 468
           ADC +  A   ELFI
Sbjct: 292 ADCQERDASKAELFI 306


>gi|73666149|gb|AAZ79751.1| gyrase B [Salmonella enterica subsp. enterica serovar Brandenburg]
          Length = 269

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 88/279 (31%), Positives = 141/279 (50%), Gaps = 14/279 (5%)

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P+ + F +   F+   L K  +  ++L+  V       ++  E       + F++ G
Sbjct: 1   RFWPNHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEG 53

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K +++   +N++ I   IF   TEK G     V  A+ W +     I  + N I   +
Sbjct: 54  GIKAFVEYLNKNKTPIHPNIFYFSTEKGGI---GVGVALQWNDGFQENIYCFTNNIPQRD 110

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK
Sbjct: 111 GGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTK 170

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTA 443
            KLVS + +  VE  + +    YL++NP +A  ++  +I+        RR +    RK A
Sbjct: 171 DKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGA 230

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           +    LPGKLADC +     +EL++VEGDSAGGSAKQ R
Sbjct: 231 LDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGR 269


>gi|167995591|gb|ACA13631.1| GyrB [Thalassospira sp. MCCC 1A02030]
 gi|167995593|gb|ACA13632.1| GyrB [Thalassospira sp. MCCC 1A02031]
          Length = 306

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 100/315 (31%), Positives = 152/315 (48%), Gaps = 19/315 (6%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------RNKRGTRITFRPDPKIFG 217
           ALS  L + + R       +FS G  + PLE               GT +TF PD  IF 
Sbjct: 1   ALSTLLKLRIWRNGKEHYMEFSGGDAIKPLEVVGDAPLTADGTPLSGTEVTFYPDGNIFT 60

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               FD A L    +  A+L+  V      ++     +G P + + ++ GG++ +++   
Sbjct: 61  QL-EFDLATLEHRLRELAFLNSGVILTLRDER-----HGEPVETKLHYEGGIRAFVEYLD 114

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++    E    + EK G    TVE A+ W +        + N I   +GGTH +G R 
Sbjct: 115 RNKTRQIEESIVIEGEKDGI---TVEVALQWNDSYHETTLCFTNNIPQRDGGTHMAGFRA 171

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA+ +    K  +++  DD       ++SV + +P+F+ QTK KLVS + + 
Sbjct: 172 ALTRQINNYAQESGIAKKEKVALSGDDAREGLSCVISVKVPDPKFSSQTKDKLVSSEVRP 231

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            VEN + D    +L ++P +A K++  V+E +  R   RK RE   RK A+    LPGKL
Sbjct: 232 VVENIVNDKLQQWLEEHPQDARKIVTKVVEAASAREAARKARELTRRKGALDISSLPGKL 291

Query: 454 ADCSQNIAHGTELFI 468
           ADC +  A   ELFI
Sbjct: 292 ADCQERDASKAELFI 306


>gi|291196123|emb|CBG14414.1| DNA gyrase subunit B [Pseudomonas alcaliphila]
          Length = 267

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 80/270 (29%), Positives = 134/270 (49%), Gaps = 16/270 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS EL +T+ R   I+ Q +  G+P +PL       +  GT+I F+P  + F +
Sbjct: 1   VSVVNALSKELVLTIRRSGKIWEQTYVHGVPQAPLAAVGDT-DGTGTQIHFKPSEETFAN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++         ++E F + GGLK +++    
Sbjct: 60  IH-FSWDILAKRLRELSFLNSGVGILLRDER-------TGKEELFKYEGGLKAFVEYLNT 111

Query: 279 NRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           N+++++       + E+ G     VE A+ W +     +  + N I   +GGTH +G R 
Sbjct: 112 NKTVVNQVFHFNIQREEDGV---GVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFRS 168

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  +S   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 169 ALTRHLNNYIESEGLAKKFKVSTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 228

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 AVEQEMGKYFSDFLLENPNEAKAVVGKMID 258


>gi|73666139|gb|AAZ79746.1| gyrase B [Salmonella enterica subsp. enterica serovar Manhattan]
          Length = 269

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 89/279 (31%), Positives = 141/279 (50%), Gaps = 14/279 (5%)

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F P  + F +   F+   L K  +  ++L+  V       ++  E       + F++ G
Sbjct: 1   RFWPSHETFTNVTEFEYEILAKRLREPSFLNSGVSIRLRDKRDGKE-------DHFHYEG 53

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           G+K +++   +N++ I   IF   TEK G     VE A+ W +     I  + N I   +
Sbjct: 54  GIKAFVEYLNKNKTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRD 110

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384
           GGTH +G R A+TR +  Y +      K  +S   DD     + ++SV + +P+F+ QTK
Sbjct: 111 GGTHLAGFRAAMTRTLDAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTK 170

Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTA 443
            KLVS + +  VE  + +    YL++NP +A  ++  +I+        RR +    RK A
Sbjct: 171 DKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGA 230

Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
           +    LPGKLADC +     +EL++VEGDSAGGSAKQ R
Sbjct: 231 LDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGR 269


>gi|224174502|emb|CAR92669.1| DNA gyrase, B subunit [Bradyrhizobium liaoningense]
 gi|224174504|emb|CAR92670.1| DNA gyrase, B subunit [Bradyrhizobium liaoningense]
          Length = 222

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 114/231 (49%), Gaps = 10/231 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS +L + + R N     +F+ G  ++PL+       +RGT +TF 
Sbjct: 1   SGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAHGDAVAPLKVVGDAPGRRGTEVTFL 60

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
              + F +   +D A L    +  A+L+  V    S  +   EK      EE ++ GG++
Sbjct: 61  ASTETFKN-IEYDFATLEHRLRELAFLNSGVNIVLSDMRHAVEKR-----EEMHYSGGVE 114

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGT 329
            +++    N+  I       ++   G     VE A+ W +   E    + N I   +GGT
Sbjct: 115 EFVKYLDRNKKAIVPAPIMVRSAANGI---GVEAALWWNDSYHENVLCFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFA 380
           H +G R ALTR +  YAE    K  I++  DD       +LSV + +P+F+
Sbjct: 172 HLAGFRGALTRQVNGYAEANAKKEKIALTGDDCREGLTAVLSVKVPDPKFS 222


>gi|304415666|gb|ADM30939.1| gyrase B subunit [Vibrio sp. MSSRF60]
 gi|304415668|gb|ADM30940.1| gyrase B subunit [Vibrio sp. MSSRF64]
          Length = 267

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 69/264 (26%), Positives = 127/264 (48%), Gaps = 13/264 (4%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS+++ +T+ R   I +Q +  G+P +PL          GT + F P    F +   F 
Sbjct: 1   ALSEKVLLTIYRGGQIHTQTYHHGVPQAPLSVVGDTEK-TGTTVRFWPSADTFTN-IEFH 58

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L K  +  ++L+  V      ++E        +++ F + GG++ ++     N++ I
Sbjct: 59  YDILAKRLRELSFLNSGVSIKLVDERE------EDKQDHFMYEGGIQAFVTHLNRNKTPI 112

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
             ++F    E++     +VE A+ W +     I  + N I   +GGTH +G R ALTR +
Sbjct: 113 HEKVFHFNAERED--GISVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRAALTRTL 170

Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             Y +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE+A+
Sbjct: 171 NTYMDKEGYSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAM 230

Query: 401 RDPFDHYLVQNPIEATKLLEWVIE 424
            +  + +L ++P EA  +   +I+
Sbjct: 231 GEKLNEFLAEHPSEAKMVCSKIID 254


>gi|291196205|emb|CBG14497.1| DNA gyrase subunit B [Pseudomonas nitroreducens]
          Length = 267

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 78/270 (28%), Positives = 129/270 (47%), Gaps = 16/270 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS EL +T+ R+  ++ Q +  G+P  PL          GT + F+P P+ F +
Sbjct: 1   VSVVNALSHELRLTIRREGKVWEQVYHHGVPQFPLRPVGDTEG-SGTEVHFKPSPETFHN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRIRELSFLNSGVGIVLRDERAGKE-------ELFKYEGGLRAFVEYLNT 111

Query: 279 NRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           N++ ++       + E+ G     VE A+ W +     I  + N I   +GGTH +G R 
Sbjct: 112 NKTAVNQVFHFNCQREEDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRS 168

Query: 337 ALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E     +        DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 169 ALTRHLNNYIEQEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 228

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 AVEQEMGKYFADFLLENPNEAKAVVGKMID 258


>gi|164456663|dbj|BAF97824.1| gyrase B subunit [Vibrio fischeri]
          Length = 256

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 69/266 (25%), Positives = 127/266 (47%), Gaps = 13/266 (4%)

Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225
           S+++ +T+ R   I  Q +  G P +PL    K  +  GT+I F P  + F +   F   
Sbjct: 1   SEKVELTIHRAGEIHQQVYHHGEPEAPLAVIGKT-DTTGTKIRFWPSEETFTNVV-FVYE 58

Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285
            L K  +  ++L+  V       +E        + + F + GG++ ++Q    N++ I  
Sbjct: 59  ILAKRLRELSFLNSGVSIKLQDMRE------EDKADHFMYEGGIQAFVQHLNRNKTPIHQ 112

Query: 286 EIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKK 344
           ++F   +E++     +VE ++ W +     I  + N I   +GGTH +G R ALTR +  
Sbjct: 113 KVFHFDSERED--GISVEVSMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSALTRTLNT 170

Query: 345 YAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRD 402
           + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE+A+ +
Sbjct: 171 FMDKEGFSKKAKAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGE 230

Query: 403 PFDHYLVQNPIEATKLLEWVIERSEE 428
               +L +NP EA  +   +I+ +  
Sbjct: 231 KLSEFLAENPSEAKMVCSKIIDAARA 256


>gi|5360381|dbj|BAA81970.1| DNA gyrase subunit B [Pseudomonas syringae pv. mori]
          Length = 204

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 62/211 (29%), Positives = 100/211 (47%), Gaps = 13/211 (6%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDTTGTQ 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F+P    F +   F    L K  +  ++L+  V      ++   E       E F + 
Sbjct: 60  IHFKPSADTFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYE 111

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GGL+ +++    N++ ++           G     VE A+ W +     +  + N I   
Sbjct: 112 GGLRAFVEYLNTNKTPVNEVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQR 168

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
           +GGTH  G R ALTR +  Y E     +   
Sbjct: 169 DGGTHLVGFRSALTRNLNNYIEQEGLAKKYK 199


>gi|5360277|dbj|BAA81918.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|5360477|dbj|BAA82018.1| DNA gyrase subunit B [Pseudomonas syringae pv. syringae]
 gi|5360493|dbj|BAA82026.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|5360501|dbj|BAA82030.1| DNA gyrase subunit B [Pseudomonas syringae]
          Length = 204

 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 62/211 (29%), Positives = 100/211 (47%), Gaps = 13/211 (6%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYIHGVPQEPMKIVGE-SDSTGTQ 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F+P    F +   F    L K  +  ++L+  V      ++   E       E F + 
Sbjct: 60  IHFKPSADTFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYE 111

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GGL+ +++    N++ ++           G     VE A+ W +     +  + N I   
Sbjct: 112 GGLRAFVEYLNTNKTPVNEVFHFNVQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQR 168

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
           +GGTH  G R ALTR +  Y E     +   
Sbjct: 169 DGGTHLVGFRSALTRNLNNYIEQEGLAKKHK 199


>gi|308522588|dbj|BAJ22905.1| gyrase B subunit [Aliivibrio sp. LC2-088]
          Length = 265

 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 75/274 (27%), Positives = 125/274 (45%), Gaps = 12/274 (4%)

Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216
           VG+SVVNALS+++ +T+ R+  IF Q +  G P +PL               +  D    
Sbjct: 1   VGVSVVNALSEKVELTIHRKGEIFQQTYHHGEPQAPLAVVGTTDTTGTKIRFWPSDQTFA 60

Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276
                F    L K  +  ++L+  V       +E        + + F F GG++ ++   
Sbjct: 61  N--IEFVYEILAKRLRELSFLNSGVSIILQDMRE------EDKSDHFMFEGGIQAFVNHL 112

Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335
             N++ I  +IF     ++      VE A+ W +     I  Y N I   +GGTH +G R
Sbjct: 113 NRNKTPIHQKIFHFDFTRE-EDGIAVEVAMQWNDSFQENIFCYTNNIPQRDGGTHLAGFR 171

Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393
            ALTR +  + +      K   S   DD       ++SV + +P+F+ QTK KLVS + +
Sbjct: 172 SALTRTLNTFMDKEGFSKKAKASTSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVK 231

Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427
             VE+A+ +    +L +NP EA  +   +I+ + 
Sbjct: 232 SAVESAMGEKLSEFLAENPGEAKMVCSKIIDAAR 265


>gi|302122532|gb|ADK92935.1| DNA gyrase subunit B [Geobacillus uzenensis]
 gi|302122534|gb|ADK92936.1| DNA gyrase subunit B [Geobacillus uzenensis]
          Length = 252

 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 95/255 (37%), Positives = 143/255 (56%), Gaps = 7/255 (2%)

Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311
            ++     K E+ + GG+++Y++     R ++  E      E+ G     VE A+ + + 
Sbjct: 1   TDERVDNRKNEYVYEGGIRSYVRHLNRTREVLHEEPIYIAGERDGI---AVEIALQYNDG 57

Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVG 368
               I S+ N I T EGGTHESG ++ALTR I  YA   Q  +    ++  +D+      
Sbjct: 58  YTSNIYSFVNNIHTHEGGTHESGFKMALTRIINDYARKQQIFKDNDANLTGEDVREGLTA 117

Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSE 427
           I+S+    P+F GQTKTKL + DA+   +    + F+ +L+++P  A K++E  ++    
Sbjct: 118 IVSIKHPSPQFEGQTKTKLGNSDARTVTDAVFSEQFETFLLEHPTIARKIVEKGMMAARA 177

Query: 428 ERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487
               ++ +    RK+A+    LPGKLADCS      +EL+IVEGDSAGGSAKQ R+R  Q
Sbjct: 178 RLAAKKARELTRRKSALEISNLPGKLADCSSRDPSISELYIVEGDSAGGSAKQGRDRHFQ 237

Query: 488 AVLPLRGKILNVASA 502
           A+LPLRGKILNV  A
Sbjct: 238 AILPLRGKILNVEKA 252


>gi|291196125|emb|CBG14416.1| DNA gyrase subunit B [Pseudomonas anguilliseptica]
          Length = 266

 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 78/269 (28%), Positives = 129/269 (47%), Gaps = 15/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS EL +T+ R   I+ Q +  G+P +P+       +  GT+I F+P  + F +
Sbjct: 1   VSVVNALSKELVLTIRRSGKIWEQTYVHGVPTAPIATVGD-SDTTGTQIHFKPSEETFAN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRLRELSFLNSGVGILLKDERSGKE-------ELFKYEGGLRAFVEYLNH 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++           G     VE A+ W +     +  + N I   +GGTH +G R A
Sbjct: 112 NKTAVNQVFHFTVQRDDGV---GVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFRSA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  I+   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRNLNAYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 VEQEMGKYFSDFLLENPNEAKAVVGKMID 257


>gi|291196240|emb|CBG14526.1| DNA gyrase subunit B [Pseudomonas resinovorans]
          Length = 267

 Score =  120 bits (300), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 78/270 (28%), Positives = 132/270 (48%), Gaps = 16/270 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +T+ R   ++ Q +  G+P  PL    +  +  GT + F+   + F +
Sbjct: 1   VSVVNALSEELRLTIRRAGQVWEQIYRHGVPQFPLRPVGET-DGTGTEVHFKASSETFSN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGLK +++    
Sbjct: 60  IH-FSWDILAKRLRELSFLNSGVGIVLRDERSGKE-------ELFKYEGGLKAFVEYLNT 111

Query: 279 NRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           N+++++       + E+ G     VE A+ W +     +  + N I   +GGTH +G R 
Sbjct: 112 NKTIVNEVFHFNVQREEDGV---GVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFRS 168

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  I+   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 169 ALTRNLNNYIEQEGLAKKYKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 228

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 AVEQEMGKFFADFLLENPNEAKAVVGKMID 258


>gi|188090462|gb|ACD49465.1| gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 287

 Score =  120 bits (300), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 36/71 (50%), Positives = 52/71 (73%)

Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAH 592
           LRY ++IIMTDADVDGAHI +LLLTFFY++M +LIE+ ++++  PPL++I QG + +Y  
Sbjct: 1   LRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELIERGYVYIGLPPLYKIKQGKQELYLK 60

Query: 593 DEEHKQKILEE 603
           D+      L  
Sbjct: 61  DDPALDSYLAS 71



 Score = 91.4 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 13/111 (11%)

Query: 549 AHIASLLLTFFYQ------EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILE 602
            HI  L ++ F             +    +   +     I++G KS+        Q  L 
Sbjct: 184 QHIQVLPMSAFESGELRAIHQASKLLHGLVREGAT----ISRGAKSIEVDSFAKAQNWLL 239

Query: 603 EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
           E  K G+   +I RFKGLGEM   QL +T ++   R LL+V I   + + +
Sbjct: 240 EEAKRGR---QIQRFKGLGEMNPEQLWDTTVNPETRRLLQVRIEDAVAADQ 287


>gi|146189342|emb|CAL91139.1| DNA gyrase subunit beta [Sinorhizobium meliloti]
 gi|146189344|emb|CAL91140.1| DNA gyrase subunit beta [Sinorhizobium meliloti]
 gi|146189374|emb|CAL91155.1| DNA gyrase subunit beta [Sinorhizobium meliloti]
          Length = 224

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 71/233 (30%), Positives = 112/233 (48%), Gaps = 12/233 (5%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS  L + + R   I    F+ G+   PL+       + GT +TF 
Sbjct: 1   SGGLHGVGVSVVNALSVSLKLKIRRAGKIHEMSFTHGVADGPLKVTGDAGGETGTEVTFT 60

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
           P  + F +   F+   L    +  A+L+  V+   +  +    +      EE  + GGL+
Sbjct: 61  PSEQTFSN-IEFEFGTLEHRLRELAFLNSGVRIVLTDKRHSDIRR-----EEMMYDGGLE 114

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGT 329
            ++      +  +  +  + + EK G    TVE A+ W +   E    + N I   +GGT
Sbjct: 115 AFVAYLDRAKKPLVQKPVSIRGEKDGI---TVEVAMWWNDSYHENVLCFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
           H +G R ALTR I  YA+ +    K  +S+  DD       +LSV + +P+F+
Sbjct: 172 HMAGFRGALTRQITSYADTSGITKKEKVSLTGDDCREGLTAVLSVKVPDPKFS 224


>gi|213028171|ref|ZP_03342618.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 290

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 51/77 (66%)

Query: 532 DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYA 591
             RY  +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++  PPL+++ +G +  Y 
Sbjct: 1   QARYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYI 60

Query: 592 HDEEHKQKILEEFKKHG 608
            D+E   +        G
Sbjct: 61  KDDEAMDQYQISIALDG 77



 Score = 94.1 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 31/57 (54%)

Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653
            ++ LE   K  +  + I R+KGLGEM   QL ET MD   R +LRV +   + + +
Sbjct: 233 FEQALEWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAIAADQ 289


>gi|220960830|gb|ACL92881.1| gyrase B [Streptomyces hygroscopicus subsp. hygroscopicus]
          Length = 166

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 63/165 (38%), Positives = 94/165 (56%), Gaps = 4/165 (2%)

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171
           NGRGIPV+ HP    K  +E++LT LHAGGKF    Y +SGGLHGVG+SVVNALS ++ V
Sbjct: 1   NGRGIPVDLHP-VEKKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVSVVNALSTKVSV 59

Query: 172 TVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMT 231
            V R    ++Q +  G+P +PL K E+V    GT +TF  DP +F     +    L +  
Sbjct: 60  EVKRDGYRWTQDYKLGVPTAPLAKNEQVTE-TGTTVTFWADPDVFET-TEYSFETLSRRF 117

Query: 232 QSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTYLQT 275
           Q  A+L+  +    + ++    ++ G P    + + GG+  ++Q 
Sbjct: 118 QEMAFLNKGLSISLTDERAAHVDEEGKPLSVTYCYEGGIVDFVQY 162


>gi|220960826|gb|ACL92879.1| gyrase B [Streptomyces ochraceiscleroticus]
 gi|220960882|gb|ACL92907.1| gyrase B [Streptomyces violens]
          Length = 166

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 4/165 (2%)

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171
           NGRGIPV+  P    K  +E++LT LHAGGKF    Y +SGGLHGVG+SVVNALS  + V
Sbjct: 1   NGRGIPVDIVP-SEKKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVSVVNALSQRVSV 59

Query: 172 TVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMT 231
            V R    ++Q + +G+P +PL + E   ++ GT +TF  D +IF     +    L +  
Sbjct: 60  EVKRDGYRWTQDYKQGVPTAPLARNEAT-DETGTTVTFWADGEIFET-TEYSFETLSRRF 117

Query: 232 QSKAYLSGRVKTCWSCDKE-IAEKYGIPEKEEFYFPGGLKTYLQT 275
           Q  A+L+  +    + ++E   ++ G P   ++++ GGL  +++ 
Sbjct: 118 QEMAFLNKGLTIQLTDEREAHVDEEGKPLTVKYHYEGGLVDFVKY 162


>gi|291196141|emb|CBG14432.1| DNA gyrase subunit B [Pseudomonas brenneri]
 gi|291196195|emb|CBG14487.1| DNA gyrase subunit B [Pseudomonas meridiana]
 gi|291196234|emb|CBG14521.1| DNA gyrase subunit B [Pseudomonas proteolytica]
          Length = 266

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 78/269 (28%), Positives = 128/269 (47%), Gaps = 15/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +TV R   I+ Q +  G+P +P+          GT+I F+P    F +
Sbjct: 1   VSVVNALSEELILTVRRSGKIWEQTYVHGVPQAPMAIVGD-SETTGTQIHFKPSADTFKN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G R A
Sbjct: 112 NKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 VEQEMGKYFSDFLLENPNEAKLVVGKMID 257


>gi|5360389|dbj|BAA81974.1| DNA gyrase subunit B [Pseudomonas syringae]
          Length = 204

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 62/211 (29%), Positives = 100/211 (47%), Gaps = 13/211 (6%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYIHGVPQEPMKIVGE-SDSTGTQ 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F+P    F +   F    L K  +  ++L+  V      ++   E       E F + 
Sbjct: 60  IHFKPSADTFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYE 111

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GGL+ +++    N++ ++           G     VE A+ W +     +  + N I   
Sbjct: 112 GGLRAFVEYLNTNKTPVNEVFHFNVQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQR 168

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
           +GGTH  G R ALTR +  Y E     +   
Sbjct: 169 DGGTHLVGFRSALTRNLNNYIEQEGLAKKYK 199


>gi|291196161|emb|CBG14452.1| DNA gyrase subunit B [Pseudomonas gessardii]
          Length = 266

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 78/269 (28%), Positives = 129/269 (47%), Gaps = 15/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +TV R   I+ Q +  G+P +P+    +     GT+I F+P    F +
Sbjct: 1   VSVVNALSEELILTVRRSGKIWEQTYVHGVPQAPMAIVGE-SETTGTQIHFKPSADTFKN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G R A
Sbjct: 112 NKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 VEQEMGKYFSDFLLENPNEAKLVVGKMID 257


>gi|5360429|dbj|BAA81994.1| DNA gyrase subunit B [Pseudomonas syringae pv. phaseolicola]
          Length = 204

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 63/211 (29%), Positives = 101/211 (47%), Gaps = 13/211 (6%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDTTGTQ 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F+P    F +   F    L K  +  ++L+  V      ++   E       E F + 
Sbjct: 60  IHFKPSADTFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYE 111

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GGL+ +++    N++L++           G     VE A+ W +     +  + N I   
Sbjct: 112 GGLRAFVEYLNTNKTLVNEVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQR 168

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
           +GGTH  G R ALTR +  Y E     +   
Sbjct: 169 DGGTHLVGFRSALTRNLNNYIEQEGLAKKHK 199


>gi|281332040|emb|CAZ39994.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 234

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 72/244 (29%), Positives = 123/244 (50%), Gaps = 13/244 (5%)

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS +L V V +    + Q+FS G  ++PL K E     RGT + F P  
Sbjct: 1   LHGVGVSVVNALSQKLLVDVFQNGFHYXQEFSNGAAVTPLAKLETTTK-RGTTVRFWPST 59

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
             F D   F    L +  +  ++L+  VK   + ++          +++F++ GG+++++
Sbjct: 60  VAFHDNVEFHYDILARRLRELSFLNSGVKIVLADERGD------GRRDDFHYEGGIRSFV 113

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   + ++ +   + +   E        V+ A+ W +     +  + N I   +GGTH +
Sbjct: 114 EHLAQLKTPLHPNVISVTGEHNNI---VVDVALQWTDSYQETMYCFTNNIPQKDGGTHLA 170

Query: 333 GLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390
           G R ALTR +  Y E     +   I++  DD+    + +LSV + +P F+ QTK KLVS 
Sbjct: 171 GFRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSS 230

Query: 391 DAQR 394
           D + 
Sbjct: 231 DVRP 234


>gi|164456665|dbj|BAF97825.1| gyrase B subunit [Vibrio fluvialis]
          Length = 246

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 68/256 (26%), Positives = 126/256 (49%), Gaps = 13/256 (5%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223
           ALS+++ +T+ R   + +Q +  G+P +PL       ++ GT + F P  + F +   F 
Sbjct: 1   ALSEKVVLTIHRGGKVHTQTYRHGVPEAPLAVIGDT-DRSGTMVRFWPSAETFTNI-EFH 58

Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283
              L K  +  ++L+  V      ++E        +++ F + GG++ ++     N++ I
Sbjct: 59  YEILAKRLRELSFLNSGVSIKLVDERE------EDKQDHFMYEGGIQAFVTHLNRNKTPI 112

Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342
             ++F   +E++     +VE A+ W +     I  + N I   +GGTH +G R ALTR +
Sbjct: 113 HEKVFHFNSERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTL 170

Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400
             Y +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE+A+
Sbjct: 171 NNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAM 230

Query: 401 RDPFDHYLVQNPIEAT 416
            +    +L +NP EA 
Sbjct: 231 NEKLADFLAENPSEAK 246


>gi|291196219|emb|CBG14511.1| DNA gyrase subunit B [Pseudomonas panipatensis]
          Length = 267

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 78/270 (28%), Positives = 131/270 (48%), Gaps = 16/270 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +T+ R+  ++ Q +  G+P  PL    +     GT + F+   + F +
Sbjct: 1   VSVVNALSEELRLTIRREGKVWEQIYRHGVPQFPLRPVGETEGA-GTEVHFKASAETFSN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRIRELSFLNSGVGIVLRDERSGKE-------ELFKYEGGLRAFVEYLNT 111

Query: 279 NRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           N++ ++       + E+ G     VE A+ W +     I  + N I   +GGTH +G R 
Sbjct: 112 NKTPVNEVFHFNVQREEDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRS 168

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  I+   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 169 ALTRHLNNYIETEGLAKKYKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 228

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 AVEQEMGKYFADFLLENPNEAKAVVGKMID 258


>gi|5360397|dbj|BAA81978.1| DNA gyrase subunit B [Pseudomonas syringae]
 gi|5360405|dbj|BAA81982.1| DNA gyrase subunit B [Pseudomonas syringae]
          Length = 204

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 62/211 (29%), Positives = 100/211 (47%), Gaps = 13/211 (6%)

Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206
           +Y++SGGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+
Sbjct: 1   SYKVSGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDTTGTQ 59

Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266
           I F+P    F +   F    L K  +  ++L+  V      ++   E       E F + 
Sbjct: 60  IHFKPSADTFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYE 111

Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325
           GGL+ +++    N++ ++           G     VE A+ W +     +  + N I   
Sbjct: 112 GGLRAFVEYLNTNKTPVNQVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQR 168

Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAIS 356
           +GGTH  G R ALTR +  Y E     +   
Sbjct: 169 DGGTHLVGFRSALTRNLNNYIEQEGLAKKHK 199


>gi|251736963|gb|ACT10341.1| DNA gyrase subunit B [Pseudomonas sp. WR3-19]
          Length = 241

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 75/253 (29%), Positives = 119/253 (47%), Gaps = 15/253 (5%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS EL +TV R   I+ Q +  G+P  P++   +     GT+I F+P  + 
Sbjct: 1   GVGVSVVNALSKELILTVRRSGKIWEQTYVHGVPQEPMKIVGE-SETTGTQIHFKPSAET 59

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++ 
Sbjct: 60  FKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEY 111

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G 
Sbjct: 112 LNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGF 168

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + 
Sbjct: 169 RSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEV 228

Query: 393 QRTVENALRDPFD 405
           +  VE  +   F 
Sbjct: 229 KTAVEQEVGKYFS 241


>gi|281331654|emb|CAZ40021.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 236

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 72/246 (29%), Positives = 123/246 (50%), Gaps = 13/246 (5%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS +L V V +    + Q+FS G   +PL K E     RGT + F P   
Sbjct: 1   HGVGVSVVNALSQKLLVDVFQGGFHYQQEFSNGAAXTPLAKLESTTK-RGTTVRFWPSTV 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
            F D   +    L +  +  ++L+  VK   + ++          +++F++ GG++++++
Sbjct: 60  AFHDNVEYHYDILARRLRELSFLNSGVKIVLADERGD------GRRDDFHYEGGIRSFVE 113

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              + ++ +   + +   E        V+ A+ W +     +  + N I   +GGTH +G
Sbjct: 114 HLAQLKTPLHPNVISVTGEHNNI---VVDVALQWTDSYQETMYCFTNNIPQKDGGTHLAG 170

Query: 334 LRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y E     +   I++  DD+    + +LSV + +P F+ QTK KLVS D
Sbjct: 171 FRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSD 230

Query: 392 AQRTVE 397
            +  VE
Sbjct: 231 VRPAVE 236


>gi|291196209|emb|CBG14501.1| DNA gyrase subunit B [Pseudomonas oryzihabitans]
          Length = 267

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 77/270 (28%), Positives = 130/270 (48%), Gaps = 16/270 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +T+ R   ++ Q +  G+P +PL    +  +  GT++ F+P  + F +
Sbjct: 1   VSVVNALSEELRLTIRRAGQVWEQVYVHGVPQAPLAVIGET-DTTGTQVHFKPSAETFSN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ ++     
Sbjct: 60  I-QFSWDILAKRIRELSFLNSGVGIVLRDERSGKE-------ELFKYEGGLRAFVDYLNT 111

Query: 279 NRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           N++ ++       + E  G     VE A+ W +     I  + N I   +GGTH +G R 
Sbjct: 112 NKTAVNEVFHFQVQREDDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRS 168

Query: 337 ALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E     +        DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 169 ALTRNLNNYIEAEGLAKKFKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 228

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 AVEQEMGKYFSDFLLENPNEAKAVVGKMID 258


>gi|323652532|gb|ADX98517.1| gyrase B [Candidatus Burkholderia nigropunctata]
          Length = 196

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 63/201 (31%), Positives = 101/201 (50%), Gaps = 24/201 (11%)

Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178
           + H   P +S  EI++T LHAGGKFD ++Y++SGGLHGVG+S VNALS+ L +TV R   
Sbjct: 9   DKHD--PKRSAAEIVMTELHAGGKFDQNSYKVSGGLHGVGVSCVNALSEWLRLTVRRDGK 66

Query: 179 IFSQKFSRGIPLSPLEKKEK-----------VRNKRGTRITFRPDPKIFGDKAGFDAARL 227
               +F+RG+  +    +E                RGT + F  D  IFG+   F    L
Sbjct: 67  KHFMEFARGVVQNREIVEEDGIQYSPMPVVGDTENRGTEVHFLADQTIFGN-VEFHYDIL 125

Query: 228 LKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEI 287
            K  +  ++L+  V+   +  +   E         F F GG+K +++   + ++++   +
Sbjct: 126 AKRMRELSFLNNGVRIRLTDQRTGKEDD-------FAFAGGVKGFVEYINKAKTVLHPTV 178

Query: 288 FTGKTEKKGTHRGTVEWAIAW 308
           F    E++     TVE A+ W
Sbjct: 179 FHATGERENV---TVEVAMQW 196


>gi|291196131|emb|CBG14422.1| DNA gyrase subunit B [Pseudomonas chlororaphis subsp. aurantiaca]
 gi|291196133|emb|CBG14424.1| DNA gyrase subunit B [Pseudomonas chlororaphis subsp. aureofaciens]
          Length = 266

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 77/269 (28%), Positives = 128/269 (47%), Gaps = 15/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +TV R   I+ Q +  G+P +P+          GT+I F+   + F +
Sbjct: 1   VSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGD-SETTGTQIHFKASSETFKN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVA 337
           N++ ++         + G     VE A+ W +   E    + N I   +GGTH  G R A
Sbjct: 112 NKTAVNQVFHFNVQREDGI---GVEIALQWNDSFNENLQCFTNNIPQRDGGTHLVGFRSA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +++
Sbjct: 229 VEQEMGKYFSDFLLENPNEAKLVVGKMLD 257


>gi|224174560|emb|CAR92698.1| DNA gyrase, B subunit [Bradyrhizobium sp. RLA08]
 gi|224174566|emb|CAR92701.1| DNA gyrase, B subunit [Bradyrhizobium sp. RLA11]
          Length = 222

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 76/231 (32%), Positives = 115/231 (49%), Gaps = 10/231 (4%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS +L + + R N     +F+ G  ++PL   E    KRGT +TF+
Sbjct: 1   SGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAHGDAVAPLVVVEDAPGKRGTEVTFQ 60

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
              + F +   +D A L    +  A+L+  V    S  +   EK      EE ++ GG++
Sbjct: 61  ASTETFKN-IEYDFATLEHRLRELAFLNSGVNIALSDMRHAVEKR-----EEMHYSGGVE 114

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGT 329
            +++    N+  I       + E  G     VE A+ W +   E    + N I   +GGT
Sbjct: 115 EFVKYLDRNKKAIVPAPIMVRAEANGI---GVEAALWWNDSYHENVLCFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFA 380
           H +G R ALTR +  YAE    K  I++  DD       +LSV + +P+F+
Sbjct: 172 HLAGFRGALTRQVNGYAEANAKKEKIALTGDDCREGLTAVLSVKVPDPKFS 222


>gi|218937741|gb|ACL13030.1| DNA gyrase subunit B [Lactobacillus acetotolerans]
          Length = 279

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 93/282 (32%), Positives = 152/282 (53%), Gaps = 12/282 (4%)

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           FD   L    +  A+L+  +K  ++  ++ +      E + +++ GG+K Y+     N  
Sbjct: 6   FDDKVLKTRIRELAFLNKGLKLTFTDKRKDS-----AETDVYHYEGGIKEYVSFLNRNSK 60

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
           ++  E    +    G     VE A+ +       + ++ N I T EGGTHE+G + ALTR
Sbjct: 61  VLFDEPIYVEGNYNGI---NVEVALQYTTGYKTTLMTFANNIHTYEGGTHEAGFKTALTR 117

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +  YA   +    +  ++  +D+      ++SV   +P+F GQTKTKL + DA+  V+ 
Sbjct: 118 VVNDYAHKAKILKDKDDNLSGEDIREGMTAVVSVKHPDPQFEGQTKTKLGNSDARTAVDK 177

Query: 399 ALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457
           A  + F H+L++NP    K++E   +        +R +    +K+ +    LPGKLAD +
Sbjct: 178 AFSETFSHFLMENPKVGRKIVEKSQLAERARTAAKRAREVTRKKSGLEIANLPGKLADNT 237

Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499
            N  + +ELF+VEG+SAGGSAKQ R+R  QA+LP+RGKILNV
Sbjct: 238 SNDPNISELFVVEGNSAGGSAKQGRSRLTQAILPIRGKILNV 279


>gi|291196189|emb|CBG14480.1| DNA gyrase subunit B [Pseudomonas mandelii]
          Length = 266

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 78/269 (28%), Positives = 129/269 (47%), Gaps = 15/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +TV R   I+ Q +  G+P  P++   +     GT+I F+P    F +
Sbjct: 1   VSVVNALSEELVLTVRRSGKIWEQTYIHGVPKEPMKIVGE-SETTGTQIHFKPSDLTFKN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G R A
Sbjct: 112 NKTPVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 VEQEMGKYFSDFLLENPNEAKLVVGKMID 257


>gi|291196215|emb|CBG14507.1| DNA gyrase subunit B [Pseudomonas palleroniana]
          Length = 266

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 77/269 (28%), Positives = 128/269 (47%), Gaps = 15/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +TV R   I+ Q +  G+P +P+          GT+I F+   + F +
Sbjct: 1   VSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGD-SETTGTQIHFKASSETFKN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G R A
Sbjct: 112 NKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 VEQEMGKYFSDFLLENPNEAKLVVGKMID 257


>gi|50871662|emb|CAG15373.1| DNA gyrase subunit B [Pseudomonas balearica]
          Length = 284

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 79/270 (29%), Positives = 131/270 (48%), Gaps = 16/270 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+E+ +T+ R+  ++ Q +  G+P +PL    +     GT I F+P  + F +
Sbjct: 2   VSVVNALSEEMILTIRREGKVWEQIYRHGVPQAPLTAMGETEG-TGTEIHFKPSAETFKN 60

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL  ++     
Sbjct: 61  IH-FSWDILAKRLRELSFLNSGVGILLRDERTAKE-------ELFKYEGGLSAFVSYLNT 112

Query: 279 NRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           N+S I+       + E+ G     VE A+ W +     I  + N I   +GGTH +G R 
Sbjct: 113 NKSAINQVFHFNVQREEDGV---GVEIALQWNDSFNENILCFTNNIPQRDGGTHLAGFRS 169

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 170 ALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 229

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            VE  +   F  +L+++P EA  ++  +I+
Sbjct: 230 AVEQEMGKHFADFLLEHPNEAKAVVGKMID 259


>gi|296427598|gb|ADH16670.1| DNA gyrase subunit B [Cronobacter muytjensii]
          Length = 134

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/141 (35%), Positives = 80/141 (56%), Gaps = 8/141 (5%)

Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187
           S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G
Sbjct: 1   SAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIRREGKIHQQTYVHG 60

Query: 188 IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247
           +P +PL        + GT++ F P  + F +   F+   L K  +  ++L+  V      
Sbjct: 61  VPQAPLAVTGDT-EQTGTQVRFWPSHETFTNVTEFEYDILAKRLRELSFLNSGVSIRLVD 119

Query: 248 DKEIAEKYGIPEKEEFYFPGG 268
            ++  E       + F++ GG
Sbjct: 120 KRDGKE-------DHFHYEGG 133


>gi|281331684|emb|CAZ40036.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 239

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 68/236 (28%), Positives = 118/236 (50%), Gaps = 13/236 (5%)

Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213
           LHGVG+SVVNALS +L V V +    + Q+FS G  ++ L K E     RGT + F P  
Sbjct: 1   LHGVGVSVVNALSQKLLVDVFQNGFHYQQEFSNGAAVTALAKLETTTK-RGTTVRFWPST 59

Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273
             F D   F    L +  +  ++L+  VK   + ++          +++F++ GG+++++
Sbjct: 60  VAFHDNVEFHYDILARRLRELSFLNSGVKIVLADERGD------GRRDDFHYEGGIRSFV 113

Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332
           +   + ++ +   + +   E  G     V+ A+ W +     +  + N I   +GGTH +
Sbjct: 114 EHLAQLKTPLHPNVISVTGEHNGI---VVDVALQWTDSYQETMYCFTNNIPQKDGGTHLA 170

Query: 333 GLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTK 386
           G R ALTR +  Y E     +   I++  DD+    + +LSV + +P F+ QTK K
Sbjct: 171 GFRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEK 226


>gi|168705454|ref|ZP_02737731.1| DNA gyrase subunit B [Gemmata obscuriglobus UQM 2246]
          Length = 294

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 76/304 (25%), Positives = 130/304 (42%), Gaps = 39/304 (12%)

Query: 55  LEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGR 114
           +E +R+RP M++GGT  + LH L  E++++A+  +    A ++ V+LD +GF+ + D+  
Sbjct: 21  MEAIRLRPRMFLGGTGSRGLHQLLFELVNDALGPLSGDPAGVVRVALDADGFVEISDD-- 78

Query: 115 GIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI-SVVNALSDELHVTV 173
                          +E + + +               GLH     SV  ALS+EL    
Sbjct: 79  ---------CSPPLNVEAVFSRM--------------SGLHAADSRSVACALSEELTARA 115

Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233
            R   +    F RG  L    +     +  G  + FRPDP IFG  A FD   +    Q 
Sbjct: 116 RRSGAVPQCTFRRGQ-LHAETQFGGPPDDCGLTVRFRPDPAIFGA-ARFDPDIIRNRLQQ 173

Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293
            A+L+  V+  ++ +    E       + F +P G+  Y++    NR+ + +E+     E
Sbjct: 174 CAFLNSGVRIAFADESSGTE-------DVFEYPDGIADYVKWLNTNRTPVHAEVIAFDGE 226

Query: 294 KKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK 352
             G      E  + WC + +    S+ N   T  GGTH +G+R A+     +    +   
Sbjct: 227 AGGV---RYEVGLQWCADADALPVSFANGYCTRLGGTHTTGVRAAVKTWCARCCVRSLRA 283

Query: 353 RAIS 356
           +  S
Sbjct: 284 KKSS 287


>gi|291196173|emb|CBG14464.1| DNA gyrase subunit B [Pseudomonas jinjuensis]
          Length = 267

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 80/270 (29%), Positives = 132/270 (48%), Gaps = 16/270 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS EL +T+ R+  ++ Q +  G+P  PL       +  GT + F+P P+ F +
Sbjct: 1   VSVVNALSHELRLTIRREGKVWEQLYHHGVPQFPLRPVGDT-DGSGTEVHFKPSPETFHN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRIRELSFLNSGVGIVLKDERAGKE-------ELFKYEGGLRAFVEYLNT 111

Query: 279 NRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
           N++ ++       + E+ G     VE A+ W +     I  + N I   +GGTH +G R 
Sbjct: 112 NKTPVNQVFHFNMQREEDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRS 168

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR +  Y E      K  I+   DD       I+SV + +P+F+ QTK KLVS + + 
Sbjct: 169 ALTRHLNNYIESEGLAKKYKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 228

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIE 424
            VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 AVEQEMGKYFADFLLENPNEAKAVVGKMID 258


>gi|291196228|emb|CBG14515.1| DNA gyrase subunit B [Pseudomonas peli]
          Length = 266

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 78/269 (28%), Positives = 128/269 (47%), Gaps = 15/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS EL +T+ R   I+ Q +  G+P +P+       +  GT+I F+P    F +
Sbjct: 1   VSVVNALSKELILTIRRSGKIWEQTYIHGVPQAPIAAVGD-SDVTGTQIHFKPSEDTFAN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRLRELSFLNSGVGILLKDERSGKE-------ELFKYEGGLRAFVEYLNH 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++           G     VE A+ W +     +  + N I   +GGTH +G R A
Sbjct: 112 NKTPVNQVFHFTVQRDDGV---GVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFRSA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  I+   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRNLNAYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 VEQEMGKYFSDFLLENPNEAKAVVGKMID 257


>gi|251736967|gb|ACT10343.1| DNA gyrase subunit B [Pseudomonas sp. WR4-40]
          Length = 240

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 75/252 (29%), Positives = 119/252 (47%), Gaps = 15/252 (5%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS EL +TV R   I+ Q +  G+P  P++   +     GT+I F+P  + 
Sbjct: 1   GVGVSVVNALSKELILTVRRSGKIWEQTYVHGVPQEPMKIVGE-SETTGTQIHFKPSAET 59

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++ 
Sbjct: 60  FKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEY 111

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G 
Sbjct: 112 LNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGF 168

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + 
Sbjct: 169 RSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEV 228

Query: 393 QRTVENALRDPF 404
           +  VE  +   F
Sbjct: 229 KTAVEQEVGKYF 240


>gi|281331930|emb|CAZ39960.1| DNA gyrase subunit B [Stenotrophomonas maltophilia]
          Length = 235

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 71/245 (28%), Positives = 123/245 (50%), Gaps = 13/245 (5%)

Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214
           HGVG+SVVNALS +L V V +    + Q+FS G  ++PL K E     RGT + F P   
Sbjct: 1   HGVGVSVVNALSQKLLVDVFQGGFHYQQEFSNGAAVTPLAKLESTTK-RGTTVRFWPSTV 59

Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274
            F D   +    L +  +  ++L+  VK   + ++          +++F++ GG++++++
Sbjct: 60  AFHDNVEYHYDILARRLRELSFLNSGVKIVLADERGD------GRRDDFHYEGGIRSFVE 113

Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333
              + ++ +   + +   E        V+ A+ W +     +  + N I   +GGTH +G
Sbjct: 114 HLAQLKTPLHPNVXSVTGEHNNI---VVDVALQWTDSYQETMYCFTNNIPQKDGGTHLAG 170

Query: 334 LRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391
            R ALTR +  Y E     +   I++  DD+    + +LSV + +P F+ QTK KLVS D
Sbjct: 171 FRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSD 230

Query: 392 AQRTV 396
            +  V
Sbjct: 231 VRPAV 235


>gi|188090396|gb|ACD49432.1| gyrase subunit B [Xanthomonas melonis]
 gi|188090398|gb|ACD49433.1| gyrase subunit B [Xanthomonas melonis]
          Length = 288

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/76 (46%), Positives = 52/76 (68%)

Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAH 592
           LRY ++I+MTDADVDG+HI +LLLTFFY++M +LIE+ H+++  PPL+++ QG   +Y  
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIGLPPLYKLKQGKSELYLK 60

Query: 593 DEEHKQKILEEFKKHG 608
           D+      L      G
Sbjct: 61  DDAALNAYLASNAVDG 76



 Score = 90.3 bits (222), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 3/72 (4%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G KS            L +  K G+   ++ RFKGLGEM A QL ET ++ + R LL
Sbjct: 220 IVRGNKSHPITSFAQAHAWLLDEAKKGR---QVQRFKGLGEMNAEQLWETTVNPDTRRLL 276

Query: 642 RVEINKDLNSLK 653
           +V I   + + +
Sbjct: 277 QVRIEDAVAADQ 288


>gi|188090394|gb|ACD49431.1| gyrase subunit B [Xanthomonas melonis]
          Length = 288

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/76 (46%), Positives = 52/76 (68%)

Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAH 592
           LRY ++I+MTDADVDG+HI +LLLTFFY++M +LIE+ H+++  PPL+++ QG   +Y  
Sbjct: 1   LRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIGLPPLYKLKQGKSELYLK 60

Query: 593 DEEHKQKILEEFKKHG 608
           D+      L      G
Sbjct: 61  DDAALNAYLASNAVDG 76



 Score = 90.3 bits (222), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 3/72 (4%)

Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641
           I +G KS            L +  K G+   ++ RFKGLGEM A QL ET ++ + R LL
Sbjct: 220 IVRGNKSHPITSFAQAHAWLLDEAKKGR---QVQRFKGLGEMNAEQLWETTVNPDTRRLL 276

Query: 642 RVEINKDLNSLK 653
           +V I   + + +
Sbjct: 277 QVRIEDAVAADQ 288


>gi|291196238|emb|CBG14524.1| DNA gyrase subunit B [Pseudomonas psychrotolerans]
          Length = 267

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 75/269 (27%), Positives = 127/269 (47%), Gaps = 14/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +T+ R   ++ Q +  G+P +PL    +  +  GT++ F+P  + F +
Sbjct: 1   VSVVNALSEELRLTIRRAGQVWEQVYVHGVPQAPLAVIGET-DTTGTQVHFKPSAETFSN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ ++     
Sbjct: 60  I-QFSWDILAKRIRELSFLNSGVGIVLRDERSGKE-------ELFKYEGGLRAFVDYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++                 VE A+ W +     I  + N I   +GGTH +G R A
Sbjct: 112 NKTAVNEVFHFQVQRDDD--GVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSA 169

Query: 338 LTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E     +        DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 170 LTRNLNNYIEAEGLAKKFKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 229

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 230 VEQEMGKYFSDFLLENPNEAKAVVGKMID 258


>gi|291196137|emb|CBG14428.1| DNA gyrase subunit B [Pseudomonas azotifigens]
          Length = 266

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 75/269 (27%), Positives = 129/269 (47%), Gaps = 15/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +T+ R+  ++ Q +  G+P +PL    +     GT + F+P  + F +
Sbjct: 1   VSVVNALSEELQLTIRREGKVWEQTYRHGVPQAPLSPVGET-ESSGTEVHFKPSAETFQN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRLRELSFLNSGVGILLRDERSAKE-------ELFKYEGGLRAFVEYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++           G     VE A+ W +     I  + N I   +GGTH +G R A
Sbjct: 112 NKNAVNQVFHFNVQRDDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSA 168

Query: 338 LTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E     + +      DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRNLNAYIEQEGLAKKLKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L+++P EA  ++  +I+
Sbjct: 229 VEQEMGKYFGDFLLEHPNEAKAVVGKMID 257


>gi|219536326|gb|ACL18068.1| DNA gyrase subunit B [Pseudomonas sp. TLC13:19-20cm-1G]
          Length = 279

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 78/269 (28%), Positives = 129/269 (47%), Gaps = 15/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+EL +TV R   I+ Q +  G+P  P++   +     GT+I F+P    F +
Sbjct: 1   VSVVNALSEELVLTVRRSGKIWEQTYIHGVPKEPMKIVGE-SETTGTQIHFKPSDLTFKN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++    
Sbjct: 60  IH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G R A
Sbjct: 112 NKTPVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 VEQEMGKYFSDFLLENPNEAKLVVGKMID 257


>gi|167995647|gb|ACA13659.1| GyrB [Thalassospira lucentensis]
          Length = 306

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 98/315 (31%), Positives = 150/315 (47%), Gaps = 19/315 (6%)

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------RNKRGTRITFRPDPKIFG 217
           ALS  L + V R       +FS G  + PLE           +   GT +TF PD +IF 
Sbjct: 1   ALSTLLKLRVWRNGKEHYMEFSGGDAIKPLEVVGDAPLTEDGKPLSGTEVTFYPDGEIFT 60

Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277
               FD   L    +  A+L+  V      ++        P +++ ++ GG++ +++   
Sbjct: 61  -MTDFDLPTLEHRLRELAFLNSGVILTLRDERSG-----EPVEQKLHYEGGIRAFVEYLD 114

Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336
            N++    E      EK G    TVE A+ W +        + N I   +GG H +G R 
Sbjct: 115 RNKARQIEEAIVIVGEKDGI---TVEVALQWNDSYHETTLCFTNNIPQRDGGAHMAGFRA 171

Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394
           ALTR I  YA+ +    K  +++  DD       ++SV + +P+F+ QTK KLVS + + 
Sbjct: 172 ALTRQINSYAQESGIAKKEKVNLSGDDAREGLSCVISVKVPDPKFSSQTKDKLVSSEVRP 231

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453
            VEN + D    +L ++P +A K++  V+E +  R   RK RE   RK A+    LPGKL
Sbjct: 232 VVENIVNDKLAQWLEEHPQDARKIVGKVVEAASAREAARKARELTRRKGALDISSLPGKL 291

Query: 454 ADCSQNIAHGTELFI 468
           ADC +  A   ELFI
Sbjct: 292 ADCQERDASKAELFI 306


>gi|45126715|dbj|BAD12205.1| DNA gyrase subunit B [Halomonas sp. SMT L4]
          Length = 276

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 83/265 (31%), Positives = 126/265 (47%), Gaps = 15/265 (5%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS EL +T+ RQ  +F Q +  G+P +PL    K     GTR+ FRP P+ FG+   F
Sbjct: 11  NALSAELRLTIWRQGEVFEQMYRHGVPQAPLGVVGKTEK-SGTRVHFRPSPETFGN-IEF 68

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  ++L+  V      ++   E       E F++ GGL+ ++     N+S+
Sbjct: 69  HFDILAKRLRELSFLNSGVAIRLLDERSGKE-------ELFHYEGGLRAFVDHLNTNKSV 121

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           I+           G     VE A+ W E     I  Y N I   +GG H +G R  LTR 
Sbjct: 122 INPVFHFNAVRDDGV---EVEVAMQWSEAFTENIFCYTNNIPQRDGGAHLAGFRAGLTRT 178

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  VE  
Sbjct: 179 LNNYIEAENLLKKAKVNTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQE 238

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIE 424
           +   F  YLV+ P EA  ++  +++
Sbjct: 239 MSRLFSEYLVEKPNEAKAIVNKMLD 263


>gi|291196183|emb|CBG14475.1| DNA gyrase subunit B [Pseudomonas lundensis]
          Length = 266

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 77/269 (28%), Positives = 128/269 (47%), Gaps = 15/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS+ L +TV R   I+ Q +  G+P +P+    +     GT+I F+P  + F +
Sbjct: 1   VSVVNALSEILVLTVRRSGKIWEQTYVHGVPQAPMAIVGE-SETTGTQIHFKPSAETFKN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ ++     
Sbjct: 60  IH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVDYLNT 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G R A
Sbjct: 112 NKTPVNQVFHFNVQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 VEQEMGKYFSDFLLENPNEAKLVVGKMID 257


>gi|3065897|gb|AAC14324.1| DNA topoisomerase IV E subunit [Streptococcus pneumoniae]
 gi|3152713|gb|AAC17125.1| DNA topoisomerase IV E subunit [Streptococcus pneumoniae]
          Length = 107

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 57/106 (53%), Positives = 75/106 (70%)

Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523
            EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N A A    I  N++I  ++  +G  
Sbjct: 2   NELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAG 61

Query: 524 TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569
             + +  ED  Y+K+IIMTDAD DGAHI +LLLTFFY+ M  L+E 
Sbjct: 62  VGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEA 107


>gi|210062250|gb|ACJ06174.1| GyrB [Aeromonas allosaccharophila]
          Length = 283

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 88/295 (29%), Positives = 146/295 (49%), Gaps = 16/295 (5%)

Query: 179 IFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLS 238
           ++ Q +  G P +PL++        GT + F P P IF D   F    L K  +  ++L+
Sbjct: 1   VYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSDTL-FHYEILAKRLRELSFLN 58

Query: 239 GRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH 298
             V      +++  E         F + GG+K +++   +N++ I  ++F   TE+ G  
Sbjct: 59  SGVSIRLMDERDGRE-------AHFCYEGGIKAFVEYLNQNKTPIHPKVFHFTTEQDGI- 110

Query: 299 RGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAI 355
              VE A+ W +     +  + N I   +GGTH  G R ALTR +  Y +      K   
Sbjct: 111 --GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTLNNYMDKEDYSKKAKS 168

Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415
           +   DD+    + ++SV + +P+F+ QTK KLVS + +  VE A+ +    +L++NP +A
Sbjct: 169 AASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAMGEKLADFLLENPGDA 228

Query: 416 TKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469
             ++  +I+ +  R   RK RE   RK A+    LPGKLADC +     +EL+IV
Sbjct: 229 KIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEKDPALSELYIV 283


>gi|291196191|emb|CBG14483.1| DNA gyrase subunit B [Pseudomonas marincola]
          Length = 266

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 78/269 (28%), Positives = 129/269 (47%), Gaps = 15/269 (5%)

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +SVVNALS EL +T+ R   I+ Q +  G+P +P+       +  GT+I F+P    F +
Sbjct: 1   VSVVNALSKELVMTIRRAGKIWEQTYFHGVPQAPIAAVGDT-DTSGTQIHFKPSEDTFAN 59

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
              F    L K  +  ++L+  V      ++   E       E F + GGL+ +++   +
Sbjct: 60  IH-FSWDILAKRLRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLNQ 111

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337
           N++ ++           G     VE A+ W +     +  + N I   +GGTH +G R A
Sbjct: 112 NKTAVNQVFHFTVQRDDGV---GVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFRSA 168

Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395
           LTR +  Y E      K  I+   DD       I+SV + +P+F+ QTK KLVS + +  
Sbjct: 169 LTRNLNAYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 228

Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIE 424
           VE  +   F  +L++NP EA  ++  +I+
Sbjct: 229 VEQEMGKYFSDFLLENPNEAKAVVGKMID 257


>gi|296427564|gb|ADH16653.1| DNA gyrase subunit B [Cronobacter sakazakii]
 gi|296427566|gb|ADH16654.1| DNA gyrase subunit B [Cronobacter sakazakii]
 gi|296427568|gb|ADH16655.1| DNA gyrase subunit B [Cronobacter sakazakii]
 gi|296427570|gb|ADH16656.1| DNA gyrase subunit B [Cronobacter sakazakii]
 gi|296427572|gb|ADH16657.1| DNA gyrase subunit B [Cronobacter sakazakii]
 gi|296427574|gb|ADH16658.1| DNA gyrase subunit B [Cronobacter sakazakii]
 gi|296427578|gb|ADH16660.1| DNA gyrase subunit B [Cronobacter sakazakii]
 gi|296427580|gb|ADH16661.1| DNA gyrase subunit B [Cronobacter sakazakii]
 gi|296427582|gb|ADH16662.1| DNA gyrase subunit B [Cronobacter sakazakii]
 gi|296427584|gb|ADH16663.1| DNA gyrase subunit B [Cronobacter sakazakii]
 gi|296427586|gb|ADH16664.1| DNA gyrase subunit B [Cronobacter sakazakii]
 gi|296427588|gb|ADH16665.1| DNA gyrase subunit B [Cronobacter sakazakii]
 gi|296427590|gb|ADH16666.1| DNA gyrase subunit B [Cronobacter sakazakii]
 gi|296427592|gb|ADH16667.1| DNA gyrase subunit B [Cronobacter sakazakii]
 gi|296427596|gb|ADH16669.1| DNA gyrase subunit B [Cronobacter sakazakii]
 gi|307603323|gb|ADN68290.1| GyrB [Cronobacter sakazakii]
 gi|307603325|gb|ADN68291.1| GyrB [Cronobacter sakazakii]
          Length = 134

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/141 (34%), Positives = 82/141 (58%), Gaps = 8/141 (5%)

Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187
           S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G
Sbjct: 1   SAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIRREGKIHQQTYVHG 60

Query: 188 IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247
           +P +PL       ++ GT++ F P  + F +   F+   L K  +  ++L+  V      
Sbjct: 61  VPQAPLAVTGDT-DQTGTQVRFWPSLETFTNVTEFEYDILAKRLRELSFLNSGVSIRLVD 119

Query: 248 DKEIAEKYGIPEKEEFYFPGG 268
            ++        +++ F++ GG
Sbjct: 120 KRD-------GKQDHFHYEGG 133


>gi|172044718|gb|ACB69924.1| DNA gyrase subunit B [Halomonas sp. V3a-3]
 gi|172044720|gb|ACB69925.1| DNA gyrase subunit B [Halomonas sp. V3a]
          Length = 258

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 93/253 (36%), Positives = 133/253 (52%), Gaps = 4/253 (1%)

Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339
           +  +        E +      VE A+ W E     I  Y N I   +GGTH +G R ALT
Sbjct: 6   TNKAPLNPVFHFEMEREDGIAVEVAMQWNEGFAENIFCYTNNIPQRDGGTHLAGFRAALT 65

Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397
           R +  Y E      K  +    DD       I+SV + +P+F+ QTK KLVS + +  VE
Sbjct: 66  RTLNSYIEAEGLLKKSKVGTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 125

Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADC 456
             +   F  YL++ P EA  ++  +++ +  R   RK      RK A+    LPGKLADC
Sbjct: 126 QEMGRLFSEYLIEKPNEAKGIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLADC 185

Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516
            +     +EL++VEGDSAGGSAKQ R+R  QA+LPL+GKILNV  A  +K+ ++ ++  L
Sbjct: 186 QEKDPSLSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGTL 245

Query: 517 VQALGCRTRSQYR 529
           + ALGC    +  
Sbjct: 246 ITALGCGIGREEF 258


>gi|220960888|gb|ACL92910.1| gyrase B [Streptomyces purpurogeneiscleroticus]
          Length = 166

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 61/165 (36%), Positives = 95/165 (57%), Gaps = 4/165 (2%)

Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171
           NGRGIPV+  P    K  +E++LT LHAGGKF    Y +SGGLHGVG+SVVNALS  + V
Sbjct: 1   NGRGIPVDIVP-SEKKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVSVVNALSQRVSV 59

Query: 172 TVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMT 231
            V R    ++Q + +G+P +PL + E   ++ GT +TF  D  IF     +    L +  
Sbjct: 60  EVKRDGYRWTQDYKQGVPTAPLARNEAT-DETGTTVTFWADGDIFET-TEYSFETLSRRF 117

Query: 232 QSKAYLSGRVKTCWSCDKE-IAEKYGIPEKEEFYFPGGLKTYLQT 275
           Q  A+L+  +    + ++E   ++ G P   ++++ GGL  +++ 
Sbjct: 118 QEMAFLNKGLTIQLTDEREAHVDEEGKPLTVKYHYEGGLVDFVKY 162


>gi|223674666|gb|ACN13029.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi]
          Length = 213

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 103/223 (46%), Gaps = 15/223 (6%)

Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207
           Y++SGGLHGVG+SVVNALS+ L +TV R   I+ Q +  G+P  P++   +  +  GT+I
Sbjct: 1   YKVSGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDTTGTQI 59

Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267
            F+P    F +   F    L K  +  ++L+  V      ++   E       E F + G
Sbjct: 60  HFKPSADTFKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEG 111

Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326
           GL+ +++    N++ ++           G     VE A+ W +     +  + N I   +
Sbjct: 112 GLRAFVEYLNTNKTPVNQVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRD 168

Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367
           GGTH  G R ALTR +  Y E      K  ++   DD      
Sbjct: 169 GGTHLVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLT 211


>gi|66271264|gb|AAY43845.1| DNA gyrase subunit B [Vibrio sp. Vib 391]
          Length = 253

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 128/263 (48%), Gaps = 13/263 (4%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS+++ +T+ R   I +Q +  G P +PL       ++ GT+I F P  + F +   F
Sbjct: 1   NALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETFTN-IEF 58

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  ++L+  V      ++E        + + F F GG++ +++    N++ 
Sbjct: 59  HYDILAKRLRELSFLNSGVSIKLVDEREAD------KSDHFMFEGGIQAFVEHLNTNKTP 112

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           I  +IF    E++      VE A+ W +     I  + N I   +GGTH +G R ALTR 
Sbjct: 113 IIEKIFHFDFERED--GIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRT 170

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE++
Sbjct: 171 LNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESS 230

Query: 400 LRDPFDHYLVQNPIEATKLLEWV 422
           + +    +L++NP EA  +   +
Sbjct: 231 MGEKLSEFLIENPTEAKMVCSKI 253


>gi|296427576|gb|ADH16659.1| DNA gyrase subunit B [Cronobacter dublinensis]
 gi|296427594|gb|ADH16668.1| DNA gyrase subunit B [Cronobacter turicensis]
          Length = 134

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/141 (34%), Positives = 81/141 (57%), Gaps = 8/141 (5%)

Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187
           S  E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+  I  Q +  G
Sbjct: 1   SAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIRREGKIHQQTYVHG 60

Query: 188 IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247
           +P +PL        + GT++ F P  + F +   F+   L K  +  ++L+  V      
Sbjct: 61  VPQAPLAVTGDT-EQTGTQVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLVD 119

Query: 248 DKEIAEKYGIPEKEEFYFPGG 268
            ++        +++ F++ GG
Sbjct: 120 KRD-------GKQDHFHYEGG 133


>gi|164456761|dbj|BAF97873.1| gyrase B subunit [Vibrio calviensis]
          Length = 248

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 73/257 (28%), Positives = 127/257 (49%), Gaps = 13/257 (5%)

Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222
           NALS++L +T+ R   I  Q +  G+P +PL       ++ GTRI F P  + F D   F
Sbjct: 1   NALSEKLELTIWRHGQIHQQVYVHGVPEAPLAPIGDT-DETGTRIRFWPSDQTFTDLL-F 58

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
               L K  +  ++L+  V      ++E        + + F + GG++ +++    N++ 
Sbjct: 59  HYDILAKRLRELSFLNSGVSIRLIDERE------EDKHDHFTYEGGIRAFVEHLNRNKTP 112

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341
           I   +F  + E++     TVE ++ W +     I  + N I   +GGTH +G R ALTR 
Sbjct: 113 IHPSVFHFEHERED--GVTVEVSMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRT 170

Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           +  Y E      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE+A
Sbjct: 171 LNSYMEKEGYSKKANAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESA 230

Query: 400 LRDPFDHYLVQNPIEAT 416
           + +    +L+++P +A 
Sbjct: 231 MNEKLGEFLIESPQDAK 247


>gi|300490564|gb|ADK22866.1| DNA gyrase B subunit [Vibrio communis]
          Length = 246

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 71/255 (27%), Positives = 125/255 (49%), Gaps = 13/255 (5%)

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+++ +T+ R   I +Q +  G P +PL       ++ GT+I F P  + F +   
Sbjct: 1   VNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETFTN-IE 58

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F    L K  +  ++L+  V      ++E        + + F F GG++ +++    N++
Sbjct: 59  FHYDILAKRLRELSFLNSGVSIKLVDEREAD------KSDHFMFEGGIQAFVEHLNTNKT 112

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I  +IF    E++      VE A+ W +     I  + N I   +GGTH +G R ALTR
Sbjct: 113 PIIEKIFHFDFERED--GIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTR 170

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE+
Sbjct: 171 TLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVES 230

Query: 399 ALRDPFDHYLVQNPI 413
           A+ +    +L++NP 
Sbjct: 231 AMGEKLSEFLIENPT 245


>gi|223885869|gb|ACN22606.1| DNA gyrase subunit beta [Rhizobium sp. SL-1]
          Length = 225

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 67/233 (28%), Positives = 112/233 (48%), Gaps = 12/233 (5%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS  L + + R   +    F+ G+  +PL+   +   + GT +TF   P+ 
Sbjct: 2   GVGVSVVNALSTWLKLRIRRDGKVHEISFTHGVADAPLKVVGEYEGRPGTEVTFLASPET 61

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F     +D   L    +  A+L+  V+   +  ++   K      EE  + GGL+ +++ 
Sbjct: 62  F-TMTEYDYNTLEHRLRELAFLNSGVRIRLTDKRKPDIKE-----EEMIYDGGLEAFVRY 115

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334
               +  +  +    K EK G    TVE A+ W +   E    + N I   +GGTH +G 
Sbjct: 116 LDRAKKPLVDKPVAIKGEKDGI---TVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGF 172

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385
           R ALTR +  YA+ +    K  +++  +D       +LSV + +P+F+ QTK 
Sbjct: 173 RGALTRQVTSYADSSGITKKEKVTLQGEDCREGLTAVLSVKVPDPKFSSQTKD 225


>gi|251736961|gb|ACT10340.1| DNA gyrase subunit B [Pseudomonas sp. BR8-21]
          Length = 239

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 74/251 (29%), Positives = 117/251 (46%), Gaps = 15/251 (5%)

Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215
           GVG+SVVNALS+EL +TV R   I+ Q +  G+P  P++         GT+I F+P    
Sbjct: 1   GVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQEPMKIVGD-SESTGTQIHFKPSADT 59

Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275
           F +   F    L K  +  ++L+  V      ++   E       E F + GGL+ +++ 
Sbjct: 60  FKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEY 111

Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334
              N++ ++         + G     VE A+ W +     +  + N I   +GGTH  G 
Sbjct: 112 LNTNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGF 168

Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
           R ALTR +  Y E      K  ++   DD       I+SV + +P+F+ QTK KLVS + 
Sbjct: 169 RSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEV 228

Query: 393 QRTVENALRDP 403
           +  VE  +   
Sbjct: 229 KTAVEQEMGKY 239


>gi|300490562|gb|ADK22865.1| DNA gyrase B subunit [Vibrio communis]
 gi|300490566|gb|ADK22867.1| DNA gyrase B subunit [Vibrio communis]
 gi|300490568|gb|ADK22868.1| DNA gyrase B subunit [Vibrio communis]
          Length = 245

 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 71/255 (27%), Positives = 125/255 (49%), Gaps = 13/255 (5%)

Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
           VNALS+++ +T+ R   I +Q +  G P +PL       ++ GT+I F P  + F +   
Sbjct: 1   VNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETFTN-IE 58

Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281
           F    L K  +  ++L+  V      ++E        + + F F GG++ +++    N++
Sbjct: 59  FHYDILAKRLRELSFLNSGVSIKLVDEREAD------KSDHFMFEGGIQAFVEHLNTNKT 112

Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340
            I  +IF    E++      VE A+ W +     I  + N I   +GGTH +G R ALTR
Sbjct: 113 PIIEKIFHFDFERED--GIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTR 170

Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
            +  + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE+
Sbjct: 171 TLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVES 230

Query: 399 ALRDPFDHYLVQNPI 413
           A+ +    +L++NP 
Sbjct: 231 AMGEKLSEFLIENPT 245


>gi|164456749|dbj|BAF97867.1| gyrase B subunit [Vibrio neonatus]
          Length = 278

 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 74/263 (28%), Positives = 127/263 (48%), Gaps = 13/263 (4%)

Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224
           LS ++ +T+ R   I +Q +  G P +PL+      +K GT I F P  + F +   F  
Sbjct: 1   LSKKVTLTIHRGGKIHTQTYKHGEPQAPLKAVGDT-DKTGTEIRFWPSEETFSN-IEFYY 58

Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284
             L K  +  ++L+  V      ++         + + F F GG+K +++    N++ I 
Sbjct: 59  DILAKRLRELSFLNSGVSINLVDER------VEDKSDHFMFEGGIKAFVEHLNTNKTPII 112

Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343
            +IF    E++     TVE A+ W +     I  + N I   +GGTH +G R ALTR + 
Sbjct: 113 QKIFYFDIERED--GITVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSALTRTLN 170

Query: 344 KYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401
            + +      K   +   DD       ++SV + +P+F+ QTK KLVS + +  VE+A+ 
Sbjct: 171 TFMDKEGFSKKAKAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMG 230

Query: 402 DPFDHYLVQNPIEATKLLEWVIE 424
           +    +LV+NP EA  +   +I+
Sbjct: 231 EKLSEFLVENPGEAKIVCGKIID 253


>gi|146189392|emb|CAL91164.1| DNA gyrase subunit beta [Agrobacterium tumefaciens]
          Length = 224

 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 71/233 (30%), Positives = 113/233 (48%), Gaps = 12/233 (5%)

Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210
           SGGLHGVG+SVVNALS  L + + R   +    F+ G+  +PL    +   + GT +TF 
Sbjct: 1   SGGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGRSGTEVTFL 60

Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270
             P+ F     +D   L    +  A+L+  V+   +  +    K     +EE  + GGL+
Sbjct: 61  ASPQTF-TMTDYDYGTLEHRLRELAFLNSGVRILLTDKRHSDIK-----QEELLYDGGLE 114

Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGT 329
            +++    ++  + +       EK G    TVE A+ W +   E    + N I   +GGT
Sbjct: 115 AFVRYLDRSKKPLVNTPVAIHGEKDGI---TVEVALWWNDSYHENVLCFTNNIPQRDGGT 171

Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380
           H +G R ALTR +  YAE +    K  +S+  +D       ILSV + +P+F+
Sbjct: 172 HMAGFRAALTRQVTSYAETSGILKKEKVSLQGEDCREGLTAILSVKVPDPKFS 224


  Database: nr
    Posted date:  May 13, 2011  4:10 AM
  Number of letters in database: 999,999,932
  Number of sequences in database:  2,987,209
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 13, 2011  4:17 AM
  Number of letters in database: 999,998,956
  Number of sequences in database:  2,896,973
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 13, 2011  4:23 AM
  Number of letters in database: 999,999,979
  Number of sequences in database:  2,907,862
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 13, 2011  4:29 AM
  Number of letters in database: 999,999,513
  Number of sequences in database:  2,932,190
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 13, 2011  4:33 AM
  Number of letters in database: 792,586,372
  Number of sequences in database:  2,260,650
  
Lambda     K      H
   0.311    0.122    0.361 

Lambda     K      H
   0.267   0.0376    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,020,233,017
Number of Sequences: 13984884
Number of extensions: 292097918
Number of successful extensions: 753664
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 10887
Number of HSP's successfully gapped in prelim test: 3156
Number of HSP's that attempted gapping in prelim test: 699338
Number of HSP's gapped (non-prelim): 16358
length of query: 686
length of database: 4,792,584,752
effective HSP length: 146
effective length of query: 540
effective length of database: 2,750,791,688
effective search space: 1485427511520
effective search space used: 1485427511520
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 85 (37.5 bits)